# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- MCPsignal PF00015.16 gi|336252098|ref|YP_004595205.1| - 1.7e-41 142.1 34.2 1.7e-41 142.1 23.7 3.4 1 1 2 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF948 PF06103.6 gi|336252098|ref|YP_004595205.1| - 0.00036 20.3 29.6 0.01 15.6 1.0 4.8 4 1 1 5 5 5 2 Bacterial protein of unknown function (DUF948) AAA_13 PF13166.1 gi|336252098|ref|YP_004595205.1| - 0.0019 16.7 6.6 0.0019 16.7 4.6 3.0 1 1 3 4 4 4 2 AAA domain BLOC1_2 PF10046.4 gi|336252098|ref|YP_004595205.1| - 0.0026 17.8 21.7 0.67 10.1 0.2 4.9 4 2 1 5 5 5 3 Biogenesis of lysosome-related organelles complex-1 subunit 2 Reo_sigmaC PF04582.7 gi|336252098|ref|YP_004595205.1| - 0.0041 16.3 31.2 0.025 13.7 7.0 2.9 2 1 1 3 3 3 2 Reovirus sigma C capsid protein NEP PF10167.4 gi|336252098|ref|YP_004595205.1| - 0.027 14.1 6.1 0.11 12.1 0.8 3.7 3 1 1 4 4 4 0 Uncharacterised conserved protein COG2 PF06148.6 gi|336252098|ref|YP_004595205.1| - 0.033 14.0 0.2 0.033 14.0 0.1 5.0 3 3 3 6 6 6 0 COG (conserved oligomeric Golgi) complex component, COG2 Laminin_II PF06009.7 gi|336252098|ref|YP_004595205.1| - 0.067 12.9 32.2 0.11 12.2 0.5 5.0 3 2 2 5 5 5 0 Laminin Domain II Allexi_40kDa PF05549.6 gi|336252098|ref|YP_004595205.1| - 0.8 8.9 12.9 0.36 10.0 1.0 2.7 2 2 0 2 2 2 0 Allexivirus 40kDa protein ADIP PF11559.3 gi|336252098|ref|YP_004595205.1| - 1.2 9.0 26.9 0.025 14.4 1.4 3.9 2 2 1 3 3 3 0 Afadin- and alpha -actinin-Binding DUF1759 PF03564.10 gi|336252098|ref|YP_004595205.1| - 4.7 7.0 5.2 70 3.2 0.1 3.6 2 2 1 3 3 3 0 Protein of unknown function (DUF1759) DUF1664 PF07889.7 gi|336252098|ref|YP_004595205.1| - 5.5 6.8 21.5 3.4 7.4 0.3 4.6 2 2 2 4 4 4 0 Protein of unknown function (DUF1664) Med9 PF07544.8 gi|336252098|ref|YP_004595205.1| - 5.8 6.7 11.4 1.4 8.7 0.1 4.5 3 1 1 4 4 4 0 RNA polymerase II transcription mediator complex subunit 9 DUF3407 PF11887.3 gi|336252098|ref|YP_004595205.1| - 8.3 5.6 15.4 2.6 7.2 2.0 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3407) DASH_Duo1 PF08651.5 gi|336252098|ref|YP_004595205.1| - 9 5.9 11.8 0.85 9.2 0.1 4.3 4 2 3 7 7 7 0 DASH complex subunit Duo1 APG17 PF04108.7 gi|336252098|ref|YP_004595205.1| - 9.5 4.8 23.0 1.1e+03 -2.0 15.9 3.4 1 1 0 1 1 1 0 Autophagy protein Apg17 DUF2892 PF11127.3 gi|336252101|ref|YP_004595208.1| - 3.3e-09 36.4 0.1 5.5e-09 35.7 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2892) Polyketide_cyc2 PF10604.4 gi|336252101|ref|YP_004595208.1| - 1.2e-08 35.2 1.3 2e-08 34.5 0.9 1.4 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.15 gi|336252101|ref|YP_004595208.1| - 1.2e-05 25.3 0.0 1.7e-05 24.8 0.0 1.2 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Saccharop_dh PF03435.13 gi|336252102|ref|YP_004595209.1| - 8.6e-15 54.5 0.0 3.2e-14 52.7 0.0 1.8 1 1 0 1 1 1 1 Saccharopine dehydrogenase NAD_binding_10 PF13460.1 gi|336252102|ref|YP_004595209.1| - 0.1 12.6 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 NADH(P)-binding C1_1 PF00130.17 gi|336252103|ref|YP_004595210.1| - 0.062 13.0 4.8 0.27 10.9 3.3 2.0 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) TraN PF06986.6 gi|336252103|ref|YP_004595210.1| - 0.071 12.4 0.0 0.13 11.5 0.0 1.4 1 0 0 1 1 1 0 Type-1V conjugative transfer system mating pair stabilisation DUF2387 PF09526.5 gi|336252103|ref|YP_004595210.1| - 0.1 12.5 0.1 0.2 11.6 0.1 1.5 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) HNH PF01844.18 gi|336252103|ref|YP_004595210.1| - 0.17 11.7 3.9 0.34 10.8 2.7 1.5 1 0 0 1 1 1 0 HNH endonuclease DUF968 PF06147.6 gi|336252103|ref|YP_004595210.1| - 1.3 8.9 4.6 2.4 7.9 3.2 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF968) MCPsignal PF00015.16 gi|336252104|ref|YP_004595211.1| - 5.7e-37 127.3 62.2 1e-35 123.2 24.4 3.6 1 1 2 3 3 3 1 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.20 gi|336252104|ref|YP_004595211.1| - 3.8e-10 39.7 0.2 3.8e-10 39.7 0.1 5.6 6 2 0 6 6 6 2 HAMP domain IncA PF04156.9 gi|336252104|ref|YP_004595211.1| - 1.7e-06 27.8 33.7 0.009 15.6 7.2 5.1 2 1 2 4 4 4 1 IncA protein Laminin_II PF06009.7 gi|336252104|ref|YP_004595211.1| - 0.0024 17.6 36.0 0.028 14.1 1.0 5.1 2 2 3 5 5 5 3 Laminin Domain II AAA_13 PF13166.1 gi|336252104|ref|YP_004595211.1| - 0.0079 14.7 32.5 0.094 11.1 11.5 2.5 1 1 1 2 2 2 1 AAA domain Spc7 PF08317.6 gi|336252104|ref|YP_004595211.1| - 0.024 13.2 32.6 0.013 14.2 1.8 4.0 2 2 2 4 4 4 0 Spc7 kinetochore protein Seryl_tRNA_N PF02403.17 gi|336252104|ref|YP_004595211.1| - 0.049 13.6 34.9 0.12 12.4 1.0 5.8 1 1 5 6 6 6 0 Seryl-tRNA synthetase N-terminal domain DUF1664 PF07889.7 gi|336252104|ref|YP_004595211.1| - 0.092 12.5 30.3 0.051 13.3 1.8 5.1 3 2 2 5 5 5 0 Protein of unknown function (DUF1664) NPV_P10 PF05531.7 gi|336252104|ref|YP_004595211.1| - 0.19 12.0 31.6 0.18 12.0 0.7 6.0 3 2 3 6 6 6 0 Nucleopolyhedrovirus P10 protein DUF948 PF06103.6 gi|336252104|ref|YP_004595211.1| - 0.21 11.4 31.2 3.4 7.5 0.1 6.9 3 2 3 7 7 6 0 Bacterial protein of unknown function (DUF948) APG17 PF04108.7 gi|336252104|ref|YP_004595211.1| - 0.27 9.9 26.7 0.86 8.3 1.8 3.5 1 1 1 3 3 3 0 Autophagy protein Apg17 Mod_r PF07200.8 gi|336252104|ref|YP_004595211.1| - 0.35 10.7 26.8 0.015 15.1 3.5 4.2 2 2 2 4 4 4 0 Modifier of rudimentary (Mod(r)) protein AAA_27 PF13514.1 gi|336252104|ref|YP_004595211.1| - 0.37 8.4 56.6 0.075 10.7 27.5 2.1 1 1 1 2 2 2 0 AAA domain DUF2935 PF11155.3 gi|336252104|ref|YP_004595211.1| - 0.57 10.2 8.0 0.49 10.4 0.1 3.8 2 2 1 3 3 3 0 Domain of unknown function (DUF2935) FH2 PF02181.18 gi|336252104|ref|YP_004595211.1| - 0.86 8.4 11.3 0.5 9.1 0.8 2.9 2 1 0 2 2 2 0 Formin Homology 2 Domain STAT_alpha PF01017.15 gi|336252104|ref|YP_004595211.1| - 1.6 8.4 13.7 1.3 8.7 0.0 4.3 2 2 3 5 5 5 0 STAT protein, all-alpha domain DUF730 PF05325.6 gi|336252104|ref|YP_004595211.1| - 1.7 8.4 7.5 3.3 7.5 0.3 3.5 4 1 1 5 5 3 0 Protein of unknown function (DUF730) IFT57 PF10498.4 gi|336252104|ref|YP_004595211.1| - 1.8 7.2 25.0 0.33 9.6 4.0 3.6 2 1 0 2 2 2 0 Intra-flagellar transport protein 57 Vac_Fusion PF02346.11 gi|336252104|ref|YP_004595211.1| - 2.2 7.7 5.5 5.9 6.3 0.0 3.4 3 0 0 3 3 3 0 Chordopoxvirus fusion protein Allexi_40kDa PF05549.6 gi|336252104|ref|YP_004595211.1| - 2.5 7.3 17.7 0.042 13.1 0.9 3.3 1 1 3 4 4 4 0 Allexivirus 40kDa protein CENP-Q PF13094.1 gi|336252104|ref|YP_004595211.1| - 5.6 6.9 43.1 0.034 14.1 2.7 4.8 4 1 1 5 5 4 0 CENP-Q, a CENPA-CAD centromere complex subunit COG2 PF06148.6 gi|336252104|ref|YP_004595211.1| - 5.8 6.7 26.4 0.81 9.5 0.9 5.4 3 2 2 5 5 5 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF192 PF02643.10 gi|336252105|ref|YP_004595212.1| - 7.8e-19 67.3 0.0 9.6e-19 67.0 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 HMGL-like PF00682.14 gi|336252106|ref|YP_004595213.1| - 7.3e-60 202.5 2.2 1.7e-59 201.4 1.5 1.5 1 0 0 1 1 1 1 HMGL-like LeuA_dimer PF08502.5 gi|336252106|ref|YP_004595213.1| - 1.9e-30 105.3 2.4 4.4e-30 104.1 1.6 1.7 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain DUF998 PF06197.8 gi|336252107|ref|YP_004595214.1| - 0.015 14.6 6.0 0.017 14.4 4.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF998) DUF485 PF04341.7 gi|336252107|ref|YP_004595214.1| - 0.074 12.7 2.5 0.091 12.4 1.7 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF485 EmrE PF13536.1 gi|336252107|ref|YP_004595214.1| - 0.079 13.1 1.5 0.088 13.0 1.1 1.1 1 0 0 1 1 1 0 Multidrug resistance efflux transporter MscS_TM PF12794.2 gi|336252107|ref|YP_004595214.1| - 0.084 11.4 1.3 0.091 11.3 0.9 1.0 1 0 0 1 1 1 0 Mechanosensitive ion channel inner membrane domain 1 DUF3317 PF11779.3 gi|336252107|ref|YP_004595214.1| - 0.23 10.9 1.8 0.29 10.5 0.6 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF3317) DUF3007 PF11460.3 gi|336252107|ref|YP_004595214.1| - 0.48 10.5 2.2 0.53 10.3 1.5 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3007) TrbC PF04956.8 gi|336252107|ref|YP_004595214.1| - 0.68 9.9 4.3 0.98 9.4 3.0 1.3 1 0 0 1 1 1 0 TrbC/VIRB2 family DUF307 PF03733.8 gi|336252107|ref|YP_004595214.1| - 0.97 9.9 4.7 1.2 9.6 0.3 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF307) Fer4_11 PF13247.1 gi|336252108|ref|YP_004595215.1| - 1.8e-17 63.0 11.9 1.3e-15 57.0 2.9 2.9 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|336252108|ref|YP_004595215.1| - 6e-15 55.3 20.0 2.1e-07 31.1 4.1 3.7 2 2 2 4 4 4 4 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|336252108|ref|YP_004595215.1| - 1.9e-12 47.2 18.9 1e-08 35.2 3.6 3.4 2 2 1 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|336252108|ref|YP_004595215.1| - 1.1e-09 37.6 31.9 2.1e-05 24.1 1.7 4.4 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|336252108|ref|YP_004595215.1| - 1.6e-08 34.2 23.4 0.0001 22.0 4.2 3.3 2 2 2 4 4 4 3 4Fe-4S dicluster domain Fer4 PF00037.22 gi|336252108|ref|YP_004595215.1| - 2.9e-08 32.9 30.3 9e-05 21.9 2.4 4.4 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_6 PF12837.2 gi|336252108|ref|YP_004595215.1| - 6.1e-08 32.1 30.7 0.00043 20.0 1.4 4.4 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_4 PF12800.2 gi|336252108|ref|YP_004595215.1| - 1e-05 25.4 26.7 0.00089 19.3 1.5 4.3 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|336252108|ref|YP_004595215.1| - 0.00037 20.7 19.1 0.0097 16.2 0.6 4.2 3 1 2 5 5 5 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|336252108|ref|YP_004595215.1| - 0.00058 19.8 23.7 0.00067 19.6 3.8 3.5 2 2 2 4 4 4 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|336252108|ref|YP_004595215.1| - 0.0015 19.2 21.8 0.15 12.8 0.3 4.2 3 1 2 5 5 5 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|336252108|ref|YP_004595215.1| - 0.0018 18.1 23.4 0.61 9.9 0.5 3.8 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|336252108|ref|YP_004595215.1| - 0.014 15.8 40.2 0.29 11.7 3.8 4.3 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_18 PF13746.1 gi|336252108|ref|YP_004595215.1| - 0.026 14.9 23.1 0.28 11.6 2.3 4.6 3 1 1 4 4 4 0 4Fe-4S dicluster domain FAM72 PF14976.1 gi|336252108|ref|YP_004595215.1| - 6.1 6.6 9.1 4.5 7.1 0.2 2.6 2 1 1 3 3 3 0 FAM72 protein AAA_3 PF07726.6 gi|336252109|ref|YP_004595216.1| - 3.8e-67 223.8 0.2 1e-66 222.4 0.1 1.7 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|336252109|ref|YP_004595216.1| - 1.9e-15 56.8 0.0 2e-14 53.4 0.0 2.1 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|336252109|ref|YP_004595216.1| - 1.2e-06 28.7 0.0 3.6e-06 27.2 0.0 1.9 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|336252109|ref|YP_004595216.1| - 2.4e-05 23.8 0.0 0.00049 19.6 0.0 2.1 1 1 0 1 1 1 1 Sigma-54 interaction domain MCM PF00493.18 gi|336252109|ref|YP_004595216.1| - 5.8e-05 22.0 0.0 0.0032 16.3 0.0 2.2 2 0 0 2 2 2 1 MCM2/3/5 family Mg_chelatase PF01078.16 gi|336252109|ref|YP_004595216.1| - 0.0086 15.2 0.1 2.3 7.3 0.0 2.2 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI RuvB_N PF05496.7 gi|336252109|ref|YP_004595216.1| - 0.011 14.7 0.2 0.1 11.6 0.0 2.4 2 1 0 2 2 2 0 Holliday junction DNA helicase ruvB N-terminus AAA_2 PF07724.9 gi|336252109|ref|YP_004595216.1| - 0.024 14.5 0.0 0.049 13.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) DUF3071 PF11268.3 gi|336252109|ref|YP_004595216.1| - 0.046 13.4 0.7 0.16 11.6 0.7 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3071) zinc_ribbon_2 PF13240.1 gi|336252110|ref|YP_004595217.1| - 2.5e-05 23.6 2.4 3.7e-05 23.0 1.7 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|336252110|ref|YP_004595217.1| - 0.0039 16.9 0.7 0.0052 16.5 0.5 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|336252110|ref|YP_004595217.1| - 0.0069 15.5 4.0 0.027 13.6 2.8 1.9 1 1 0 1 1 1 1 zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|336252110|ref|YP_004595217.1| - 0.024 14.1 1.9 0.2 11.1 0.0 2.2 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit UPF0547 PF10571.4 gi|336252110|ref|YP_004595217.1| - 0.23 11.1 6.0 0.47 10.2 0.5 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF164 PF02591.10 gi|336252110|ref|YP_004595217.1| - 0.28 11.0 0.0 0.28 11.0 0.0 1.6 2 0 0 2 2 2 0 Putative zinc ribbon domain zf-NADH-PPase PF09297.6 gi|336252110|ref|YP_004595217.1| - 0.35 10.4 0.2 0.35 10.4 0.1 2.0 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|336252110|ref|YP_004595217.1| - 0.37 10.6 3.5 3.9 7.3 2.4 2.1 1 1 0 1 1 1 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|336252110|ref|YP_004595217.1| - 0.79 9.7 3.5 1.3 9.0 0.1 2.1 1 1 0 2 2 2 0 Zinc ribbon domain PEPcase PF00311.12 gi|336252111|ref|YP_004595218.1| - 2.5e-240 799.5 0.6 2.6e-239 796.1 0.0 2.0 2 0 0 2 2 2 1 Phosphoenolpyruvate carboxylase PEPcase_2 PF14010.1 gi|336252111|ref|YP_004595218.1| - 5.6e-05 21.6 0.0 0.0001 20.7 0.0 1.4 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase Peptidase_M16 PF00675.15 gi|336252111|ref|YP_004595218.1| - 0.018 14.7 0.8 0.15 11.8 0.2 2.6 2 0 0 2 2 2 0 Insulinase (Peptidase family M16) Activator-TraM PF11657.3 gi|336252111|ref|YP_004595218.1| - 0.051 13.0 2.1 0.57 9.6 0.1 3.0 2 1 0 2 2 2 0 Transcriptional activator TraM DNA_RNApol_7kD PF03604.8 gi|336252112|ref|YP_004595219.1| - 0.024 14.0 1.0 0.044 13.2 0.7 1.4 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_2 PF13240.1 gi|336252112|ref|YP_004595219.1| - 0.03 13.7 0.2 0.077 12.5 0.1 1.7 1 1 0 1 1 1 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|336252112|ref|YP_004595219.1| - 0.035 13.3 2.6 0.87 8.8 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|336252112|ref|YP_004595219.1| - 0.045 13.5 0.1 0.067 12.9 0.1 1.2 1 0 0 1 1 1 0 PhnA Zinc-Ribbon Pyr_redox PF00070.22 gi|336252112|ref|YP_004595219.1| - 0.065 13.6 0.1 0.086 13.2 0.1 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase DZR PF12773.2 gi|336252112|ref|YP_004595219.1| - 0.14 11.9 1.4 0.23 11.3 1.0 1.5 1 0 0 1 1 1 0 Double zinc ribbon HypA PF01155.14 gi|336252112|ref|YP_004595219.1| - 0.15 11.7 1.1 0.21 11.2 0.8 1.3 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family OrfB_Zn_ribbon PF07282.6 gi|336252112|ref|YP_004595219.1| - 0.21 11.2 2.3 0.54 9.9 1.0 1.9 2 0 0 2 2 2 0 Putative transposase DNA-binding domain zf-NADH-PPase PF09297.6 gi|336252112|ref|YP_004595219.1| - 0.41 10.2 5.3 4.5 6.8 3.7 2.4 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain UPF0547 PF10571.4 gi|336252112|ref|YP_004595219.1| - 0.5 10.1 2.7 3.6 7.3 1.8 2.0 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 zf-C2HC_2 PF13913.1 gi|336252112|ref|YP_004595219.1| - 2.7 7.7 4.9 2 8.1 0.6 2.3 2 0 0 2 2 2 0 zinc-finger of a C2HC-type adh_short PF00106.20 gi|336252113|ref|YP_004595220.1| - 2.3e-31 108.9 1.7 3.4e-31 108.4 1.2 1.3 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|336252113|ref|YP_004595220.1| - 8.5e-13 48.3 0.5 1.8e-12 47.2 0.3 1.5 1 0 0 1 1 1 1 KR domain adh_short_C2 PF13561.1 gi|336252113|ref|YP_004595220.1| - 3.3e-11 43.4 0.0 4.8e-11 42.8 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase NAD_binding_10 PF13460.1 gi|336252113|ref|YP_004595220.1| - 8.7e-06 25.8 5.5 8.3e-05 22.6 3.8 2.3 1 1 0 1 1 1 1 NADH(P)-binding Epimerase PF01370.16 gi|336252113|ref|YP_004595220.1| - 0.0021 17.5 0.1 0.0037 16.7 0.1 1.5 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Eno-Rase_NADH_b PF12242.3 gi|336252113|ref|YP_004595220.1| - 0.0056 16.4 0.1 0.012 15.3 0.1 1.5 1 0 0 1 1 1 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase DFP PF04127.10 gi|336252113|ref|YP_004595220.1| - 0.012 15.2 0.3 0.021 14.4 0.2 1.3 1 0 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein DUF1537 PF07005.6 gi|336252113|ref|YP_004595220.1| - 0.014 15.1 2.5 0.014 15.1 1.7 2.1 2 0 0 2 2 2 0 Protein of unknown function, DUF1537 Polysacc_synt_2 PF02719.10 gi|336252113|ref|YP_004595220.1| - 0.018 13.9 0.0 0.022 13.6 0.0 1.2 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein 3HCDH_N PF02737.13 gi|336252113|ref|YP_004595220.1| - 0.06 13.0 0.2 0.12 12.0 0.2 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Helicase_RecD PF05127.9 gi|336252113|ref|YP_004595220.1| - 0.11 12.0 0.0 1.5 8.4 0.0 2.1 2 0 0 2 2 2 0 Helicase ADH_zinc_N PF00107.21 gi|336252113|ref|YP_004595220.1| - 0.14 11.6 2.2 0.39 10.2 1.5 1.8 1 1 0 1 1 1 0 Zinc-binding dehydrogenase NAD_binding_7 PF13241.1 gi|336252113|ref|YP_004595220.1| - 0.16 12.2 0.2 0.39 10.9 0.2 1.6 1 0 0 1 1 1 0 Putative NAD(P)-binding HTH_24 PF13412.1 gi|336252114|ref|YP_004595221.1| - 4.4e-05 22.7 0.0 8.1e-05 21.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|336252114|ref|YP_004595221.1| - 0.00017 21.1 0.0 0.00035 20.1 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|336252114|ref|YP_004595221.1| - 0.00028 20.4 0.0 0.00055 19.4 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|336252114|ref|YP_004595221.1| - 0.0092 15.6 0.0 0.015 14.9 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Lactamase_B PF00753.22 gi|336252115|ref|YP_004595222.1| - 8.4e-23 81.0 8.6 9.9e-23 80.7 5.9 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|336252115|ref|YP_004595222.1| - 0.00011 21.7 2.7 0.00051 19.6 1.8 1.9 1 1 0 1 1 1 1 Beta-lactamase superfamily domain DUF4319 PF14203.1 gi|336252115|ref|YP_004595222.1| - 0.021 14.3 0.1 0.068 12.7 0.0 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF4319) Lactamase_B_3 PF13483.1 gi|336252115|ref|YP_004595222.1| - 0.025 14.2 1.4 0.041 13.5 1.0 1.6 1 1 0 1 1 1 0 Beta-lactamase superfamily domain ABC_tran PF00005.22 gi|336252116|ref|YP_004595223.1| - 1.4e-33 116.1 0.0 2.3e-33 115.3 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|336252116|ref|YP_004595223.1| - 7.4e-09 35.9 0.0 4.9e-05 23.4 0.0 2.3 2 0 0 2 2 2 2 AAA domain TOBE_2 PF08402.5 gi|336252116|ref|YP_004595223.1| - 4.1e-07 29.9 1.2 1.3e-06 28.3 0.2 2.4 2 0 0 2 2 2 1 TOBE domain AAA_22 PF13401.1 gi|336252116|ref|YP_004595223.1| - 2.1e-05 24.6 0.1 7.7e-05 22.8 0.1 1.8 1 1 0 1 1 1 1 AAA domain TOBE PF03459.12 gi|336252116|ref|YP_004595223.1| - 0.00017 21.6 2.6 0.00023 21.2 0.1 2.5 3 0 0 3 3 3 1 TOBE domain AAA_15 PF13175.1 gi|336252116|ref|YP_004595223.1| - 0.0017 17.4 0.0 0.033 13.2 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_16 PF13191.1 gi|336252116|ref|YP_004595223.1| - 0.0019 18.2 1.1 0.03 14.3 0.0 2.3 2 0 0 2 2 2 1 AAA ATPase domain AAA_25 PF13481.1 gi|336252116|ref|YP_004595223.1| - 0.0019 17.6 0.1 0.012 15.0 0.1 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|336252116|ref|YP_004595223.1| - 0.002 17.3 0.0 0.16 11.1 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA PF00004.24 gi|336252116|ref|YP_004595223.1| - 0.008 16.3 0.2 0.054 13.6 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) SbcCD_C PF13558.1 gi|336252116|ref|YP_004595223.1| - 0.042 13.7 0.4 0.29 11.0 0.3 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Rad17 PF03215.10 gi|336252116|ref|YP_004595223.1| - 0.057 12.0 0.0 0.082 11.5 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein ABC_ATPase PF09818.4 gi|336252116|ref|YP_004595223.1| - 0.061 11.8 0.5 0.28 9.7 0.0 2.2 2 1 0 2 2 2 0 Predicted ATPase of the ABC class AAA_29 PF13555.1 gi|336252116|ref|YP_004595223.1| - 0.062 12.8 0.0 0.12 11.9 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_33 PF13671.1 gi|336252116|ref|YP_004595223.1| - 0.086 12.7 0.1 0.31 10.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|336252116|ref|YP_004595223.1| - 0.13 11.4 0.0 0.22 10.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_14 PF13173.1 gi|336252116|ref|YP_004595223.1| - 0.17 11.8 0.0 0.39 10.6 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|336252116|ref|YP_004595223.1| - 0.48 11.2 1.9 1.1 10.0 0.1 2.3 2 1 0 2 2 2 0 AAA domain BPD_transp_1 PF00528.17 gi|336252117|ref|YP_004595224.1| - 2.4e-29 102.1 41.8 1.4e-16 60.5 7.8 3.0 3 1 0 3 3 3 2 Binding-protein-dependent transport system inner membrane component DUF3464 PF11947.3 gi|336252117|ref|YP_004595224.1| - 5.8 6.3 8.5 9.7 5.6 1.8 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF3464) SBP_bac_6 PF13343.1 gi|336252118|ref|YP_004595225.1| - 3.2e-24 85.5 0.0 4.5e-24 85.1 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|336252118|ref|YP_004595225.1| - 2e-18 67.1 1.1 2.6e-18 66.7 0.8 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|336252118|ref|YP_004595225.1| - 1.2e-08 35.1 3.1 2.4e-08 34.0 2.1 1.5 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|336252118|ref|YP_004595225.1| - 0.0083 15.7 0.0 0.015 14.9 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein CbiA PF01656.18 gi|336252119|ref|YP_004595226.1| - 0.087 12.2 0.3 1.6 8.0 0.0 2.1 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain HATPase_c PF02518.21 gi|336252121|ref|YP_004595228.1| - 2.7e-17 62.4 0.0 5e-17 61.6 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|336252121|ref|YP_004595228.1| - 2e-14 53.3 2.5 1.1e-12 47.7 0.2 2.4 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.5 gi|336252121|ref|YP_004595228.1| - 1.9e-11 43.9 0.3 1.2e-10 41.4 0.1 2.5 2 1 0 2 2 2 1 PAS fold PAS_9 PF13426.1 gi|336252121|ref|YP_004595228.1| - 9.7e-10 38.7 0.1 3.8e-09 36.8 0.1 2.1 1 1 0 1 1 1 1 PAS domain PAS_7 PF12860.2 gi|336252121|ref|YP_004595228.1| - 5.2e-06 26.4 0.1 6.8e-05 22.8 0.1 2.3 1 1 0 1 1 1 1 PAS fold PAS PF00989.19 gi|336252121|ref|YP_004595228.1| - 1.3e-05 24.8 0.0 3.7e-05 23.4 0.0 1.8 1 1 0 1 1 1 1 PAS fold PAS_8 PF13188.1 gi|336252121|ref|YP_004595228.1| - 4.4e-05 23.1 0.9 0.00017 21.3 0.2 2.4 2 1 0 2 2 2 1 PAS domain PAS_10 PF13596.1 gi|336252121|ref|YP_004595228.1| - 0.067 13.4 0.1 0.13 12.5 0.0 1.5 1 0 0 1 1 1 0 PAS domain FAD-oxidase_C PF02913.14 gi|336252122|ref|YP_004595229.1| - 9.1e-59 198.7 0.2 1.9e-58 197.7 0.2 1.6 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.18 gi|336252122|ref|YP_004595229.1| - 3.1e-42 143.3 0.6 7.6e-42 142.0 0.3 1.8 1 1 1 2 2 2 1 FAD binding domain Fer4_17 PF13534.1 gi|336252122|ref|YP_004595229.1| - 2e-09 37.6 4.4 3.9e-09 36.7 3.0 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|336252122|ref|YP_004595229.1| - 6.1e-09 35.7 5.1 1.4e-08 34.6 3.5 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|336252122|ref|YP_004595229.1| - 1.6e-07 31.6 1.1 2.6e-06 27.7 0.1 2.8 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|336252122|ref|YP_004595229.1| - 0.00012 22.3 3.2 0.0004 20.6 2.3 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|336252122|ref|YP_004595229.1| - 0.00037 20.2 9.2 0.05 13.5 1.0 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|336252122|ref|YP_004595229.1| - 0.0016 18.2 3.6 0.089 12.6 0.2 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|336252122|ref|YP_004595229.1| - 0.0019 17.9 9.0 0.039 13.7 7.3 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|336252122|ref|YP_004595229.1| - 0.0039 16.7 11.6 0.05 13.2 2.3 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|336252122|ref|YP_004595229.1| - 0.03 14.8 7.2 1.5 9.4 0.1 4.0 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_9 PF13187.1 gi|336252122|ref|YP_004595229.1| - 0.035 14.3 10.5 0.071 13.3 1.3 2.3 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|336252122|ref|YP_004595229.1| - 0.17 12.2 12.0 0.21 11.9 1.8 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_6 PF12837.2 gi|336252122|ref|YP_004595229.1| - 0.61 10.0 11.5 1.2 9.1 1.5 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Sod_Fe_C PF02777.13 gi|336252123|ref|YP_004595230.1| - 1.5e-36 124.4 0.2 2.3e-36 123.8 0.1 1.3 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, C-terminal domain Sod_Fe_N PF00081.17 gi|336252123|ref|YP_004595230.1| - 1.7e-31 108.2 0.6 3.4e-31 107.3 0.4 1.5 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, alpha-hairpin domain Podoplanin PF05808.6 gi|336252124|ref|YP_004595231.1| - 0.73 9.3 3.2 1 8.9 2.2 1.2 1 0 0 1 1 1 0 Podoplanin NDK PF00334.14 gi|336252125|ref|YP_004595232.1| - 9.3e-53 177.6 0.0 1.1e-52 177.4 0.0 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase Ribosomal_L24e PF01246.15 gi|336252126|ref|YP_004595233.1| - 1.3e-22 79.3 0.0 1.8e-22 78.9 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L24e DUF1032 PF06278.6 gi|336252126|ref|YP_004595233.1| - 1.1 7.7 7.2 1.2 7.4 5.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1032) Nop14 PF04147.7 gi|336252126|ref|YP_004595233.1| - 2.8 5.7 11.4 2.6 5.8 7.9 1.0 1 0 0 1 1 1 0 Nop14-like family NOA36 PF06524.7 gi|336252126|ref|YP_004595233.1| - 7.5 5.7 6.2 8.4 5.5 4.3 1.1 1 0 0 1 1 1 0 NOA36 protein Ribosomal_S28e PF01200.13 gi|336252127|ref|YP_004595234.1| - 1.2e-28 98.6 0.8 1.2e-28 98.6 0.5 1.0 1 0 0 1 1 1 1 Ribosomal protein S28e Ribosomal_L7Ae PF01248.21 gi|336252128|ref|YP_004595235.1| - 4.6e-24 83.7 0.0 5.4e-24 83.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.1 gi|336252128|ref|YP_004595235.1| - 0.00012 21.7 0.0 0.00016 21.4 0.0 1.2 1 0 0 1 1 1 1 PELOTA RNA binding domain eRF1_3 PF03465.10 gi|336252128|ref|YP_004595235.1| - 0.068 13.4 0.1 0.11 12.7 0.0 1.5 1 1 0 1 1 1 0 eRF1 domain 3 YbjQ_1 PF01906.12 gi|336252129|ref|YP_004595236.1| - 7.9e-35 119.4 2.0 8.8e-35 119.3 1.4 1.0 1 0 0 1 1 1 1 Putative heavy-metal-binding DUF4156 PF13698.1 gi|336252129|ref|YP_004595236.1| - 0.0066 16.3 0.1 0.013 15.3 0.0 1.6 1 1 1 2 2 2 1 Domain of unknown function (DUF4156) Pan_kinase PF03309.9 gi|336252129|ref|YP_004595236.1| - 0.031 13.8 0.1 0.036 13.5 0.1 1.1 1 0 0 1 1 1 0 Type III pantothenate kinase GNAT_acetyltr_2 PF13718.1 gi|336252130|ref|YP_004595237.1| - 3.4e-51 173.3 0.0 2e-50 170.8 0.0 1.9 1 1 0 1 1 1 1 GNAT acetyltransferase 2 Helicase_RecD PF05127.9 gi|336252130|ref|YP_004595237.1| - 3.4e-50 170.1 0.0 5.8e-50 169.3 0.0 1.4 1 0 0 1 1 1 1 Helicase DUF1726 PF08351.6 gi|336252130|ref|YP_004595237.1| - 2.8e-25 87.8 0.0 7.6e-23 80.0 0.0 2.8 2 0 0 2 2 2 1 Domain of unknown function (DUF1726) tRNA_bind_2 PF13725.1 gi|336252130|ref|YP_004595237.1| - 2.6e-12 46.7 0.0 3.8e-11 42.9 0.0 2.4 2 0 0 2 2 2 1 Possible tRNA binding domain AAA_30 PF13604.1 gi|336252130|ref|YP_004595237.1| - 1.3e-07 31.3 1.5 6.3e-07 29.1 1.0 2.2 2 0 0 2 2 2 1 AAA domain Acetyltransf_7 PF13508.1 gi|336252130|ref|YP_004595237.1| - 3.3e-05 23.9 0.0 6.6e-05 22.9 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|336252130|ref|YP_004595237.1| - 0.00099 19.2 0.4 0.066 13.3 0.1 2.9 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain DUF1546 PF07571.8 gi|336252130|ref|YP_004595237.1| - 0.0051 16.8 0.0 0.25 11.4 0.0 2.5 2 0 0 2 2 2 1 Protein of unknown function (DUF1546) Acetyltransf_1 PF00583.19 gi|336252130|ref|YP_004595237.1| - 0.024 14.6 0.0 0.068 13.2 0.0 1.9 1 0 0 1 1 1 0 Acetyltransferase (GNAT) family Acetyltransf_13 PF13880.1 gi|336252130|ref|YP_004595237.1| - 0.052 13.3 0.0 0.12 12.1 0.0 1.5 1 0 0 1 1 1 0 ESCO1/2 acetyl-transferase Myb_DNA-bind_6 PF13921.1 gi|336252130|ref|YP_004595237.1| - 0.074 13.1 0.0 1.9 8.6 0.0 2.4 2 0 0 2 2 2 0 Myb-like DNA-binding domain Acetyltransf_9 PF13527.1 gi|336252130|ref|YP_004595237.1| - 0.11 12.3 0.0 0.25 11.2 0.0 1.6 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain GBP_PSP PF02425.10 gi|336252131|ref|YP_004595238.1| - 0.15 11.5 1.3 0.43 10.1 0.9 1.8 1 1 0 1 1 1 0 Paralytic/GBP/PSP peptide adh_short PF00106.20 gi|336252132|ref|YP_004595239.1| - 2.6e-21 76.2 1.0 3.3e-21 75.9 0.7 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|336252132|ref|YP_004595239.1| - 1.4e-09 37.8 0.3 2.3e-09 37.1 0.2 1.3 1 0 0 1 1 1 1 KR domain adh_short_C2 PF13561.1 gi|336252132|ref|YP_004595239.1| - 3.5e-08 33.5 0.0 4.5e-08 33.1 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase Epimerase PF01370.16 gi|336252132|ref|YP_004595239.1| - 1.8e-06 27.5 0.1 4.5e-06 26.2 0.1 1.6 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|336252132|ref|YP_004595239.1| - 4.7e-06 26.7 0.3 1e-05 25.6 0.2 1.6 1 1 0 1 1 1 1 NADH(P)-binding Eno-Rase_NADH_b PF12242.3 gi|336252132|ref|YP_004595239.1| - 0.047 13.4 0.3 0.12 12.2 0.2 1.7 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase DUF456 PF04306.8 gi|336252133|ref|YP_004595240.1| - 1e-24 87.1 24.4 1e-24 87.1 16.9 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF456) CarboxypepD_reg PF13620.1 gi|336252134|ref|YP_004595241.1| - 1.3e-26 92.4 14.5 1.2e-15 57.2 1.8 2.9 3 0 0 3 3 3 2 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|336252134|ref|YP_004595241.1| - 1.3e-18 66.8 0.2 3.5e-08 33.3 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF4480) PEGA PF08308.6 gi|336252134|ref|YP_004595241.1| - 3.7e-12 45.8 1.0 8.6e-05 22.2 0.1 3.5 3 0 0 3 3 3 2 PEGA domain phage_tail_N PF08400.5 gi|336252134|ref|YP_004595241.1| - 6.2e-10 38.9 6.1 1.8e-05 24.4 0.3 3.3 3 1 0 3 3 3 2 Prophage tail fibre N-terminal DUF2012 PF09430.5 gi|336252134|ref|YP_004595241.1| - 6.5e-06 25.9 0.0 0.14 11.9 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF2012) Big_1 PF02369.11 gi|336252134|ref|YP_004595241.1| - 3e-05 23.8 7.4 0.00066 19.5 0.8 2.7 2 0 0 2 2 2 2 Bacterial Ig-like domain (group 1) Cna_B PF05738.8 gi|336252134|ref|YP_004595241.1| - 0.00051 19.7 1.9 0.0046 16.6 0.4 2.5 2 0 0 2 2 2 1 Cna protein B-type domain DUF4399 PF14347.1 gi|336252134|ref|YP_004595241.1| - 0.019 14.9 0.1 5 7.2 0.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4399) DUF1533 PF07550.6 gi|336252134|ref|YP_004595241.1| - 0.04 13.9 0.0 1.6 8.7 0.0 2.9 2 1 0 2 2 2 0 Protein of unknown function (DUF1533) Copper-bind PF00127.15 gi|336252135|ref|YP_004595242.1| - 8.6e-09 35.5 1.0 1.9e-08 34.4 0.0 2.0 2 0 0 2 2 2 1 Copper binding proteins, plastocyanin/azurin family TAT_signal PF10518.4 gi|336252135|ref|YP_004595242.1| - 6.4e-05 22.6 0.4 0.0001 21.9 0.3 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Spore_YhcN_YlaJ PF09580.5 gi|336252135|ref|YP_004595242.1| - 4.4 7.3 10.9 0.68 10.0 2.3 2.2 2 0 0 2 2 2 0 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) tRNA-synt_1c PF00749.16 gi|336252136|ref|YP_004595243.1| - 3.8e-59 199.8 0.0 5e-59 199.5 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.13 gi|336252136|ref|YP_004595243.1| - 1.7e-19 70.1 0.0 5.8e-19 68.4 0.0 1.9 1 1 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain TspO_MBR PF03073.10 gi|336252137|ref|YP_004595244.1| - 3.8e-44 149.7 16.3 4.2e-44 149.6 11.3 1.0 1 0 0 1 1 1 1 TspO/MBR family polyprenyl_synt PF00348.12 gi|336252138|ref|YP_004595245.1| - 1.7e-57 194.2 1.9 7.9e-57 192.0 1.3 1.8 1 1 0 1 1 1 1 Polyprenyl synthetase Lactamase_B PF00753.22 gi|336252139|ref|YP_004595246.1| - 3e-12 46.5 1.4 6e-12 45.6 0.6 1.9 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|336252139|ref|YP_004595246.1| - 1.4e-08 34.5 0.3 4.9e-07 29.4 0.1 2.3 2 0 0 2 2 2 2 Beta-lactamase superfamily domain RMMBL PF07521.7 gi|336252139|ref|YP_004595246.1| - 2.6e-05 23.9 1.7 4.2e-05 23.2 0.3 2.1 2 0 0 2 2 2 1 RNA-metabolising metallo-beta-lactamase adh_short PF00106.20 gi|336252140|ref|YP_004595247.1| - 3.1e-35 121.5 2.3 4.6e-35 120.9 1.6 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|336252140|ref|YP_004595247.1| - 7.8e-23 81.4 0.0 9.3e-23 81.2 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|336252140|ref|YP_004595247.1| - 2.6e-14 53.2 1.0 3.8e-14 52.7 0.7 1.2 1 0 0 1 1 1 1 KR domain HTH_Tnp_Tc3_1 PF11427.3 gi|336252140|ref|YP_004595247.1| - 0.003 17.1 0.1 0.007 15.9 0.0 1.5 1 0 0 1 1 1 1 Tc3 transposase Epimerase PF01370.16 gi|336252140|ref|YP_004595247.1| - 0.066 12.6 0.1 0.17 11.3 0.1 1.7 1 1 0 1 1 1 0 NAD dependent epimerase/dehydratase family AA_kinase PF00696.23 gi|336252141|ref|YP_004595248.1| - 3.8e-32 111.7 4.0 4.7e-32 111.4 2.8 1.0 1 0 0 1 1 1 1 Amino acid kinase family MoCF_biosynth PF00994.19 gi|336252141|ref|YP_004595248.1| - 0.087 12.2 0.2 0.19 11.1 0.1 1.6 1 1 0 1 1 1 0 Probable molybdopterin binding domain GRDB PF07355.7 gi|336252141|ref|YP_004595248.1| - 0.1 11.4 0.0 0.15 10.9 0.0 1.2 1 0 0 1 1 1 0 Glycine/sarcosine/betaine reductase selenoprotein B (GRDB) GHMP_kinases_C PF08544.8 gi|336252142|ref|YP_004595249.1| - 8.5e-16 57.9 2.4 2.2e-15 56.6 0.1 2.3 2 0 0 2 2 2 1 GHMP kinases C terminal GHMP_kinases_N PF00288.21 gi|336252142|ref|YP_004595249.1| - 8.6e-16 57.7 0.5 1.8e-15 56.7 0.3 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain GalKase_gal_bdg PF10509.4 gi|336252142|ref|YP_004595249.1| - 0.00071 18.7 0.0 0.0013 17.9 0.0 1.5 1 0 0 1 1 1 1 Galactokinase galactose-binding signature Aldolase_2 PF10120.4 gi|336252143|ref|YP_004595250.1| - 5.6e-46 156.0 0.0 7.4e-46 155.6 0.0 1.2 1 0 0 1 1 1 1 Putative aldolase HTH_31 PF13560.1 gi|336252143|ref|YP_004595250.1| - 6e-06 26.3 2.3 0.00017 21.7 0.4 3.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|336252143|ref|YP_004595250.1| - 9.9e-06 25.3 0.1 2.6e-05 23.9 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix MarR_2 PF12802.2 gi|336252143|ref|YP_004595250.1| - 4.5e-05 23.0 0.2 0.00095 18.7 0.0 2.6 2 0 0 2 2 2 1 MarR family HTH_38 PF13936.1 gi|336252143|ref|YP_004595250.1| - 8.4e-05 22.0 0.1 0.00025 20.5 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|336252143|ref|YP_004595250.1| - 0.00013 21.4 0.0 0.00053 19.5 0.0 2.0 1 0 0 1 1 1 1 Homeodomain-like domain HTH_19 PF12844.2 gi|336252143|ref|YP_004595250.1| - 0.0004 20.3 0.0 0.0044 17.0 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_37 PF13744.1 gi|336252143|ref|YP_004595250.1| - 0.00088 19.0 0.0 0.0026 17.5 0.0 1.8 2 0 0 2 2 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|336252143|ref|YP_004595250.1| - 0.00098 18.3 0.1 0.0037 16.5 0.0 2.0 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_24 PF13412.1 gi|336252143|ref|YP_004595250.1| - 0.001 18.3 0.0 0.0024 17.1 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TetR_N PF00440.18 gi|336252143|ref|YP_004595250.1| - 0.01 15.4 0.0 0.039 13.5 0.0 2.0 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_28 PF13518.1 gi|336252143|ref|YP_004595250.1| - 0.019 14.9 0.0 0.21 11.6 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|336252143|ref|YP_004595250.1| - 0.02 14.3 0.1 0.046 13.1 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 DUF3486 PF11985.3 gi|336252143|ref|YP_004595250.1| - 0.038 14.0 0.0 1.2 9.2 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3486) RepB PF07506.6 gi|336252143|ref|YP_004595250.1| - 0.038 13.8 0.0 0.071 12.9 0.0 1.4 1 0 0 1 1 1 0 RepB plasmid partitioning protein HTH_26 PF13443.1 gi|336252143|ref|YP_004595250.1| - 0.047 13.9 0.0 0.093 12.9 0.0 1.5 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain HTH_5 PF01022.15 gi|336252143|ref|YP_004595250.1| - 0.052 13.2 0.0 0.11 12.1 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_11 PF08279.7 gi|336252143|ref|YP_004595250.1| - 0.11 12.1 0.0 0.23 11.1 0.0 1.5 1 0 0 1 1 1 0 HTH domain Trp_repressor PF01371.14 gi|336252143|ref|YP_004595250.1| - 0.15 12.0 0.1 0.46 10.4 0.1 1.7 2 0 0 2 2 2 0 Trp repressor protein DUF2970 PF11174.3 gi|336252144|ref|YP_004595251.1| - 0.13 11.9 0.4 0.14 11.7 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2970) Ribosomal_S2 PF00318.15 gi|336252145|ref|YP_004595252.1| - 3e-38 131.1 0.0 4.1e-19 68.6 0.3 2.1 1 1 1 2 2 2 2 Ribosomal protein S2 tRNA_synt_1c_R2 PF04557.10 gi|336252145|ref|YP_004595252.1| - 0.073 13.7 1.6 0.12 13.1 1.1 1.4 1 0 0 1 1 1 0 Glutaminyl-tRNA synthetase, non-specific RNA binding region part 2 Enolase_C PF00113.17 gi|336252146|ref|YP_004595253.1| - 2e-76 256.7 0.8 2.8e-76 256.3 0.5 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.11 gi|336252146|ref|YP_004595253.1| - 1.3e-38 131.9 0.5 3.4e-38 130.5 0.1 1.9 2 0 0 2 2 2 1 Enolase, N-terminal domain MAAL_C PF07476.6 gi|336252146|ref|YP_004595253.1| - 0.00027 19.9 0.1 0.00052 19.0 0.1 1.4 1 0 0 1 1 1 1 Methylaspartate ammonia-lyase C-terminus MR_MLE PF01188.16 gi|336252146|ref|YP_004595253.1| - 0.0018 18.7 1.4 0.0024 18.3 0.1 2.0 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MR_MLE_C PF13378.1 gi|336252146|ref|YP_004595253.1| - 0.0039 17.1 0.1 0.018 14.9 0.0 2.2 2 0 0 2 2 2 1 Enolase C-terminal domain-like RNA_pol_Rpb6 PF01192.17 gi|336252147|ref|YP_004595254.1| - 2.5e-18 65.5 0.0 2.9e-18 65.3 0.0 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb6 RNA_pol_N PF01194.12 gi|336252148|ref|YP_004595255.1| - 6.9e-30 102.8 0.2 7.5e-30 102.7 0.1 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Ribosomal_S9 PF00380.14 gi|336252149|ref|YP_004595256.1| - 3.3e-37 127.4 0.1 3.7e-37 127.2 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 tRNA_anti-codon PF01336.20 gi|336252149|ref|YP_004595256.1| - 0.13 12.1 0.0 0.23 11.3 0.0 1.6 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain F_bP_aldolase PF01116.15 gi|336252149|ref|YP_004595256.1| - 0.14 11.2 0.0 0.16 11.0 0.0 1.1 1 0 0 1 1 1 0 Fructose-bisphosphate aldolase class-II Ribosomal_L13 PF00572.13 gi|336252150|ref|YP_004595257.1| - 4.8e-23 81.6 0.0 6.3e-23 81.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L13 Ribosomal_L18e PF00828.14 gi|336252151|ref|YP_004595258.1| - 3.2e-13 50.1 0.1 3.9e-13 49.9 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L18e/L15 RNA_pol_A_bac PF01000.21 gi|336252152|ref|YP_004595259.1| - 6.4e-21 74.6 0.0 3.2e-20 72.3 0.0 2.1 2 1 0 2 2 2 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.19 gi|336252152|ref|YP_004595259.1| - 5.1e-15 54.3 0.0 6.2e-15 54.0 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Ribosomal_S11 PF00411.14 gi|336252153|ref|YP_004595260.1| - 3e-42 143.2 0.5 3.4e-42 143.0 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S11 S4 PF01479.20 gi|336252154|ref|YP_004595261.1| - 1.9e-14 52.7 1.3 3.1e-14 52.1 0.2 1.8 2 0 0 2 2 2 1 S4 domain Ribosomal_S4 PF00163.14 gi|336252154|ref|YP_004595261.1| - 0.00028 21.1 0.9 0.00051 20.3 0.4 1.6 1 1 0 1 1 1 1 Ribosomal protein S4/S9 N-terminal domain Ribosomal_S13 PF00416.17 gi|336252155|ref|YP_004595262.1| - 3.4e-36 123.9 1.1 4.3e-36 123.5 0.8 1.1 1 0 0 1 1 1 1 Ribosomal protein S13/S18 FbpA PF05833.6 gi|336252155|ref|YP_004595262.1| - 0.002 16.7 0.1 0.002 16.7 0.0 1.2 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) DUF4129 PF13559.1 gi|336252156|ref|YP_004595263.1| - 5.7e-12 45.4 2.3 5.7e-12 45.4 1.6 2.2 3 0 0 3 3 3 1 Domain of unknown function (DUF4129) MARVEL PF01284.18 gi|336252156|ref|YP_004595263.1| - 0.00024 20.9 0.2 0.00074 19.3 0.1 1.7 2 0 0 2 2 2 1 Membrane-associating domain DUF4131 PF13567.1 gi|336252156|ref|YP_004595263.1| - 0.0027 17.1 0.8 0.0027 17.1 0.5 1.9 3 0 0 3 3 3 1 Domain of unknown function (DUF4131) ABC2_membrane_4 PF12730.2 gi|336252156|ref|YP_004595263.1| - 0.0048 16.1 1.0 0.0071 15.5 0.7 1.4 1 0 0 1 1 1 1 ABC-2 family transporter protein DUF983 PF06170.7 gi|336252156|ref|YP_004595263.1| - 0.066 13.3 4.9 0.14 12.2 2.4 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF983) O-antigen_lig PF13425.1 gi|336252156|ref|YP_004595263.1| - 0.16 11.9 7.4 0.29 11.1 3.8 2.3 2 1 0 2 2 2 0 O-antigen ligase like membrane protein Wzy_C PF04932.10 gi|336252156|ref|YP_004595263.1| - 0.18 11.5 4.7 0.37 10.5 3.3 1.5 1 1 0 1 1 1 0 O-Antigen ligase MFS_1 PF07690.11 gi|336252156|ref|YP_004595263.1| - 0.69 8.5 7.3 0.14 10.8 0.7 2.3 3 0 0 3 3 3 0 Major Facilitator Superfamily DUF58 PF01882.13 gi|336252157|ref|YP_004595264.1| - 9.6e-19 67.3 0.1 2.6e-18 65.9 0.1 1.8 1 0 0 1 1 1 1 Protein of unknown function DUF58 DUF11 PF01345.13 gi|336252157|ref|YP_004595264.1| - 2.9e-07 30.4 0.0 1.1e-06 28.5 0.0 2.1 1 0 0 1 1 1 1 Domain of unknown function DUF11 Mob_synth_C PF06463.8 gi|336252159|ref|YP_004595266.1| - 4.7e-31 107.1 0.0 8.5e-31 106.3 0.0 1.4 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Radical_SAM PF04055.16 gi|336252159|ref|YP_004595266.1| - 1.2e-23 84.1 0.0 2.3e-23 83.1 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|336252159|ref|YP_004595266.1| - 1.1e-08 35.1 0.0 2.5e-08 33.9 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|336252159|ref|YP_004595266.1| - 2.3e-07 30.9 0.0 5.6e-07 29.7 0.0 1.6 2 0 0 2 2 2 1 4Fe-4S single cluster domain Cytochrom_C PF00034.16 gi|336252159|ref|YP_004595266.1| - 0.089 13.6 0.1 21 6.0 0.0 3.1 3 0 0 3 3 3 0 Cytochrome c HTH_10 PF04967.7 gi|336252160|ref|YP_004595267.1| - 8.2e-18 63.7 0.1 1.5e-17 62.8 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain MarR_2 PF12802.2 gi|336252160|ref|YP_004595267.1| - 0.0023 17.5 0.1 0.019 14.6 0.0 2.3 2 0 0 2 2 2 1 MarR family DUF1463 PF07316.6 gi|336252160|ref|YP_004595267.1| - 0.1 12.1 0.0 0.17 11.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1463) RtcB PF01139.12 gi|336252162|ref|YP_004595269.1| - 5.9e-149 496.6 0.1 6.7e-149 496.4 0.1 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB DoxX PF07681.7 gi|336252163|ref|YP_004595270.1| - 3.3e-08 33.8 10.0 3.3e-08 33.8 6.9 4.0 3 1 1 4 4 4 2 DoxX DoxD PF04173.8 gi|336252163|ref|YP_004595270.1| - 0.003 17.2 10.1 0.038 13.6 0.9 3.6 3 1 0 3 3 3 2 TQO small subunit DoxD DUF4321 PF14209.1 gi|336252163|ref|YP_004595270.1| - 0.018 14.6 1.3 0.08 12.6 0.9 2.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4321) DoxX_3 PF13781.1 gi|336252163|ref|YP_004595270.1| - 0.29 11.5 12.5 0.36 11.2 1.3 2.8 2 0 0 2 2 2 0 DoxX-like family Archease PF01951.11 gi|336252165|ref|YP_004595272.1| - 2e-28 99.0 0.0 2.3e-28 98.8 0.0 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) Acetyltransf_1 PF00583.19 gi|336252166|ref|YP_004595273.1| - 9e-14 51.2 0.1 1.9e-13 50.2 0.1 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|336252166|ref|YP_004595273.1| - 6.5e-13 48.6 0.1 1.2e-12 47.8 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|336252166|ref|YP_004595273.1| - 1.2e-12 47.9 0.1 1.6e-12 47.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|336252166|ref|YP_004595273.1| - 6.5e-10 38.6 0.0 1e-09 38.0 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.1 gi|336252166|ref|YP_004595273.1| - 2e-05 24.4 0.1 3.1e-05 23.9 0.1 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|336252166|ref|YP_004595273.1| - 0.00018 21.5 0.0 0.00031 20.7 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|336252166|ref|YP_004595273.1| - 0.00038 20.4 0.1 0.00083 19.3 0.1 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|336252166|ref|YP_004595273.1| - 0.001 18.9 0.0 0.0038 17.0 0.0 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|336252166|ref|YP_004595273.1| - 0.0034 17.2 0.0 0.0056 16.5 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_3 PF13302.1 gi|336252166|ref|YP_004595273.1| - 0.0097 16.0 0.0 0.014 15.5 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain NTS_2 PF15448.1 gi|336252166|ref|YP_004595273.1| - 0.5 10.6 3.6 1.2 9.5 2.5 1.6 1 0 0 1 1 1 0 N-terminal segments of P. falciparum erythrocyte membrane protein HTH_20 PF12840.2 gi|336252167|ref|YP_004595274.1| - 1.1e-12 47.4 0.7 2.4e-12 46.4 0.5 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|336252167|ref|YP_004595274.1| - 5.3e-06 26.0 0.3 6.8e-05 22.4 0.2 2.3 1 1 0 1 1 1 1 Bacterial regulatory protein, arsR family TFIIE_alpha PF02002.12 gi|336252167|ref|YP_004595274.1| - 0.0007 19.0 0.0 0.0011 18.4 0.0 1.4 1 0 0 1 1 1 1 TFIIE alpha subunit PqqD PF05402.7 gi|336252167|ref|YP_004595274.1| - 0.0022 17.9 3.2 0.075 13.0 0.0 3.2 2 1 1 3 3 3 1 Coenzyme PQQ synthesis protein D (PqqD) TrmB PF01978.14 gi|336252167|ref|YP_004595274.1| - 0.0036 16.9 0.0 0.0092 15.6 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_12 PF08461.5 gi|336252167|ref|YP_004595274.1| - 0.0043 16.7 0.3 0.0081 15.8 0.2 1.5 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain PadR PF03551.9 gi|336252167|ref|YP_004595274.1| - 0.0096 15.6 0.1 0.019 14.7 0.1 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family DUF2513 PF10711.4 gi|336252167|ref|YP_004595274.1| - 0.057 13.4 0.0 0.1 12.7 0.0 1.4 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) Cdc6_C PF09079.6 gi|336252167|ref|YP_004595274.1| - 0.11 12.2 0.1 0.2 11.3 0.1 1.4 1 0 0 1 1 1 0 CDC6, C terminal HMA PF00403.21 gi|336252168|ref|YP_004595275.1| - 2e-12 47.0 0.1 2.2e-12 46.9 0.0 1.0 1 0 0 1 1 1 1 Heavy-metal-associated domain Tox-PL-2 PF15643.1 gi|336252168|ref|YP_004595275.1| - 0.0036 17.2 0.0 0.0038 17.1 0.0 1.1 1 0 0 1 1 1 1 Papain fold toxin 2 Thioredoxin_4 PF13462.1 gi|336252168|ref|YP_004595275.1| - 0.025 14.5 0.0 0.027 14.4 0.0 1.0 1 0 0 1 1 1 0 Thioredoxin DUF3393 PF11873.3 gi|336252168|ref|YP_004595275.1| - 0.1 12.0 0.0 0.11 11.9 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3393) E1-E2_ATPase PF00122.15 gi|336252169|ref|YP_004595276.1| - 2.6e-49 167.3 0.9 5.3e-49 166.3 0.1 1.9 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.21 gi|336252169|ref|YP_004595276.1| - 4e-44 151.5 7.3 4e-44 151.5 5.0 1.8 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|336252169|ref|YP_004595276.1| - 5.2e-17 62.6 0.1 1.1e-16 61.5 0.1 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|336252169|ref|YP_004595276.1| - 0.0017 17.9 1.5 0.14 11.6 0.9 2.3 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|336252169|ref|YP_004595276.1| - 0.0022 17.8 0.7 0.014 15.2 0.0 2.7 4 0 0 4 4 4 1 Haloacid dehalogenase-like hydrolase CBS PF00571.23 gi|336252169|ref|YP_004595276.1| - 0.017 14.9 1.7 0.033 13.9 0.1 2.3 3 0 0 3 3 3 0 CBS domain HAD_2 PF13419.1 gi|336252169|ref|YP_004595276.1| - 0.028 14.6 0.0 0.081 13.1 0.0 1.7 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase FmdE PF02663.9 gi|336252170|ref|YP_004595277.1| - 0.00083 19.2 0.0 0.0013 18.6 0.0 1.3 1 0 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon DNA_primase_S PF01896.14 gi|336252171|ref|YP_004595278.1| - 4.1e-23 81.8 0.0 8.2e-23 80.8 0.0 1.5 1 0 0 1 1 1 1 Eukaryotic and archaeal DNA primase small subunit Sld5 PF05916.6 gi|336252172|ref|YP_004595279.1| - 0.016 15.5 0.0 0.026 14.8 0.0 1.3 1 0 0 1 1 1 0 GINS complex protein CorA PF01544.13 gi|336252172|ref|YP_004595279.1| - 0.25 10.3 0.4 0.7 8.8 0.2 1.7 2 0 0 2 2 2 0 CorA-like Mg2+ transporter protein AhpC-TSA PF00578.16 gi|336252173|ref|YP_004595280.1| - 7.4e-35 119.3 0.0 8.9e-35 119.0 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|336252173|ref|YP_004595280.1| - 3.7e-18 65.4 0.0 4.5e-18 65.2 0.0 1.1 1 0 0 1 1 1 1 Redoxin SCO1-SenC PF02630.9 gi|336252173|ref|YP_004595280.1| - 0.00027 20.5 0.0 0.00064 19.3 0.0 1.6 1 1 0 1 1 1 1 SCO1/SenC DUF899 PF05988.7 gi|336252173|ref|YP_004595280.1| - 0.00032 20.1 0.0 0.00037 19.9 0.0 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF899) HTH_24 PF13412.1 gi|336252174|ref|YP_004595281.1| - 1.4e-13 49.9 0.1 2.1e-13 49.3 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|336252174|ref|YP_004595281.1| - 1.2e-11 43.9 0.8 2.1e-11 43.1 0.6 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_20 PF12840.2 gi|336252174|ref|YP_004595281.1| - 0.00014 21.6 0.0 0.00025 20.8 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|336252174|ref|YP_004595281.1| - 0.00015 21.3 0.0 0.00037 20.1 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|336252174|ref|YP_004595281.1| - 0.00052 19.6 0.1 0.0014 18.2 0.0 1.7 2 0 0 2 2 2 1 HTH domain HTH_CodY PF08222.6 gi|336252174|ref|YP_004595281.1| - 0.0012 18.1 0.3 0.0028 16.9 0.2 1.6 1 0 0 1 1 1 1 CodY helix-turn-helix domain HTH_IclR PF09339.5 gi|336252174|ref|YP_004595281.1| - 0.0022 17.5 0.0 0.0039 16.7 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|336252174|ref|YP_004595281.1| - 0.0034 17.0 0.0 2.6 7.8 0.0 2.4 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|336252174|ref|YP_004595281.1| - 0.0037 17.5 0.0 0.0085 16.4 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.17 gi|336252174|ref|YP_004595281.1| - 0.0092 15.6 0.0 0.022 14.4 0.0 1.7 2 0 0 2 2 2 1 MarR family Glyco_hydro_101 PF12905.2 gi|336252174|ref|YP_004595281.1| - 0.019 13.5 0.0 0.034 12.7 0.0 1.4 2 0 0 2 2 2 0 Endo-alpha-N-acetylgalactosaminidase YflT PF11181.3 gi|336252174|ref|YP_004595281.1| - 0.13 12.4 1.4 0.45 10.6 0.5 2.0 1 1 0 2 2 2 0 Heat induced stress protein YflT LexA_DNA_bind PF01726.11 gi|336252174|ref|YP_004595281.1| - 0.14 11.7 0.0 0.24 10.9 0.0 1.4 1 0 0 1 1 1 0 LexA DNA binding domain AAA PF00004.24 gi|336252176|ref|YP_004595283.1| - 1.1e-100 333.0 0.0 1.9e-49 167.2 0.0 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|336252176|ref|YP_004595283.1| - 9.7e-24 83.1 0.1 8e-23 80.1 0.1 2.4 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), N-terminal domain AAA_2 PF07724.9 gi|336252176|ref|YP_004595283.1| - 7.2e-17 61.8 0.1 3.7e-08 33.4 0.0 2.5 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) RuvB_N PF05496.7 gi|336252176|ref|YP_004595283.1| - 7.5e-16 57.8 0.0 7.1e-08 31.7 0.0 2.6 2 0 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|336252176|ref|YP_004595283.1| - 6.9e-15 55.5 0.1 1.2e-07 31.8 0.0 3.0 2 1 0 2 2 2 2 AAA ATPase domain CDC48_2 PF02933.12 gi|336252176|ref|YP_004595283.1| - 1.3e-14 53.5 0.1 3.7e-14 52.1 0.1 1.9 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 AAA_22 PF13401.1 gi|336252176|ref|YP_004595283.1| - 4.9e-12 46.1 0.2 0.0007 19.7 0.0 4.0 2 2 1 3 3 3 2 AAA domain AAA_17 PF13207.1 gi|336252176|ref|YP_004595283.1| - 6.5e-12 46.3 0.5 0.00016 22.4 0.1 3.0 2 1 0 2 2 2 2 AAA domain AAA_33 PF13671.1 gi|336252176|ref|YP_004595283.1| - 9e-12 45.0 0.0 3.8e-05 23.5 0.0 2.8 2 1 0 2 2 2 2 AAA domain AAA_5 PF07728.9 gi|336252176|ref|YP_004595283.1| - 9.6e-11 41.5 1.1 0.00047 19.8 0.0 4.6 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) TIP49 PF06068.8 gi|336252176|ref|YP_004595283.1| - 2.7e-10 39.5 0.0 0.00019 20.2 0.0 2.3 2 0 0 2 2 2 2 TIP49 C-terminus AAA_14 PF13173.1 gi|336252176|ref|YP_004595283.1| - 5.6e-10 39.1 0.0 0.00025 20.9 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|336252176|ref|YP_004595283.1| - 1.6e-09 37.3 0.1 0.002 17.8 0.0 2.9 2 0 0 2 2 2 2 Part of AAA domain Zeta_toxin PF06414.7 gi|336252176|ref|YP_004595283.1| - 4.1e-09 35.8 0.0 0.00081 18.5 0.0 2.5 2 0 0 2 2 2 2 Zeta toxin IstB_IS21 PF01695.12 gi|336252176|ref|YP_004595283.1| - 1.1e-08 34.7 0.0 0.0011 18.4 0.0 2.3 2 0 0 2 2 2 2 IstB-like ATP binding protein RNA_helicase PF00910.17 gi|336252176|ref|YP_004595283.1| - 2.1e-08 34.2 0.0 0.0045 17.1 0.0 2.7 2 1 0 2 2 2 2 RNA helicase DUF815 PF05673.8 gi|336252176|ref|YP_004595283.1| - 2.5e-07 29.8 0.0 0.0018 17.2 0.0 2.8 2 1 0 2 2 2 2 Protein of unknown function (DUF815) Mg_chelatase PF01078.16 gi|336252176|ref|YP_004595283.1| - 3.6e-07 29.5 0.5 0.011 14.8 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI NACHT PF05729.7 gi|336252176|ref|YP_004595283.1| - 4.1e-07 29.8 0.2 0.41 10.2 0.0 4.3 3 1 1 4 4 4 2 NACHT domain AAA_28 PF13521.1 gi|336252176|ref|YP_004595283.1| - 8e-07 29.1 0.0 0.023 14.6 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_3 PF07726.6 gi|336252176|ref|YP_004595283.1| - 8.2e-07 28.6 0.0 0.012 15.2 0.0 2.7 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.1 gi|336252176|ref|YP_004595283.1| - 1.5e-06 28.5 0.1 0.038 14.2 0.0 3.1 3 1 0 3 3 2 2 AAA domain Arch_ATPase PF01637.13 gi|336252176|ref|YP_004595283.1| - 2e-06 27.6 0.0 0.3 10.7 0.0 3.7 2 2 1 3 3 3 2 Archaeal ATPase NB-ARC PF00931.17 gi|336252176|ref|YP_004595283.1| - 2.6e-06 26.4 0.0 0.027 13.3 0.0 2.3 2 0 0 2 2 2 2 NB-ARC domain PhoH PF02562.11 gi|336252176|ref|YP_004595283.1| - 3.6e-06 26.3 0.1 0.026 13.7 0.0 2.4 2 0 0 2 2 2 2 PhoH-like protein ABC_tran PF00005.22 gi|336252176|ref|YP_004595283.1| - 4.3e-06 27.0 0.0 0.089 13.0 0.0 2.6 2 0 0 2 2 2 2 ABC transporter Sigma54_activat PF00158.21 gi|336252176|ref|YP_004595283.1| - 4.3e-06 26.3 0.1 0.12 11.8 0.0 3.5 4 1 0 4 4 3 2 Sigma-54 interaction domain AAA_25 PF13481.1 gi|336252176|ref|YP_004595283.1| - 5.1e-06 26.0 11.9 0.079 12.3 0.1 4.6 3 2 1 5 5 4 3 AAA domain KaiC PF06745.8 gi|336252176|ref|YP_004595283.1| - 1.6e-05 24.1 0.2 0.21 10.7 0.0 3.4 2 1 1 3 3 3 2 KaiC Sigma54_activ_2 PF14532.1 gi|336252176|ref|YP_004595283.1| - 2.9e-05 24.1 0.0 0.19 11.7 0.0 2.9 3 0 0 3 3 2 2 Sigma-54 interaction domain DUF2075 PF09848.4 gi|336252176|ref|YP_004595283.1| - 3.5e-05 22.9 0.0 0.14 11.0 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) AAA_11 PF13086.1 gi|336252176|ref|YP_004595283.1| - 3.8e-05 23.3 0.0 0.25 10.8 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_24 PF13479.1 gi|336252176|ref|YP_004595283.1| - 5.1e-05 22.9 0.0 0.064 12.8 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_30 PF13604.1 gi|336252176|ref|YP_004595283.1| - 6.6e-05 22.5 0.0 0.2 11.1 0.0 2.6 2 0 0 2 2 2 2 AAA domain UPF0079 PF02367.12 gi|336252176|ref|YP_004595283.1| - 0.00018 21.1 0.0 0.36 10.4 0.0 2.4 2 0 0 2 2 2 2 Uncharacterised P-loop hydrolase UPF0079 NTPase_1 PF03266.10 gi|336252176|ref|YP_004595283.1| - 0.00026 20.7 1.4 0.51 10.0 0.0 3.9 3 2 1 4 4 3 1 NTPase Parvo_NS1 PF01057.12 gi|336252176|ref|YP_004595283.1| - 0.00032 19.6 0.1 0.46 9.3 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 T2SE PF00437.15 gi|336252176|ref|YP_004595283.1| - 0.00049 19.0 0.0 0.52 9.1 0.0 2.3 2 0 0 2 2 2 2 Type II/IV secretion system protein Bac_DnaA PF00308.13 gi|336252176|ref|YP_004595283.1| - 0.0006 19.5 0.0 0.19 11.3 0.0 2.5 2 0 0 2 2 2 1 Bacterial dnaA protein ATP-synt_ab PF00006.20 gi|336252176|ref|YP_004595283.1| - 0.0026 17.2 0.0 0.83 9.1 0.0 2.8 2 1 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain ResIII PF04851.10 gi|336252176|ref|YP_004595283.1| - 0.0049 16.7 0.0 2.7 7.7 0.0 2.7 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit AFG1_ATPase PF03969.11 gi|336252176|ref|YP_004595283.1| - 0.011 14.5 0.0 3.2 6.4 0.0 2.6 2 0 0 2 2 2 0 AFG1-like ATPase Vps4_C PF09336.5 gi|336252176|ref|YP_004595283.1| - 0.034 14.0 0.1 8.7 6.3 0.0 2.8 2 0 0 2 2 2 0 Vps4 C terminal oligomerisation domain SKI PF01202.17 gi|336252176|ref|YP_004595283.1| - 0.035 13.9 0.0 6.1 6.6 0.0 2.6 2 0 0 2 2 2 0 Shikimate kinase KAP_NTPase PF07693.9 gi|336252176|ref|YP_004595283.1| - 0.047 12.6 0.0 5.9 5.7 0.0 2.8 2 1 0 2 2 2 0 KAP family P-loop domain KTI12 PF08433.5 gi|336252176|ref|YP_004595283.1| - 0.05 12.8 0.0 8.4 5.5 0.0 2.3 2 0 0 2 2 2 0 Chromatin associated protein KTI12 HJURP_C PF12347.3 gi|336252176|ref|YP_004595283.1| - 0.052 13.1 0.7 0.21 11.2 0.5 2.0 1 0 0 1 1 1 0 Holliday junction regulator protein family C-terminal repeat DEAD PF00270.24 gi|336252176|ref|YP_004595283.1| - 0.057 12.9 1.6 16 4.9 0.1 3.5 2 2 1 4 4 4 0 DEAD/DEAH box helicase Torsin PF06309.6 gi|336252176|ref|YP_004595283.1| - 0.071 12.9 0.0 4.9 7.0 0.0 2.5 2 0 0 2 2 2 0 Torsin PIF1 PF05970.9 gi|336252176|ref|YP_004595283.1| - 0.12 11.2 0.0 6.6 5.5 0.0 2.5 3 0 0 3 3 2 0 PIF1-like helicase Viral_helicase1 PF01443.13 gi|336252176|ref|YP_004595283.1| - 0.17 11.3 0.0 13 5.2 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase Cytidylate_kin2 PF13189.1 gi|336252176|ref|YP_004595283.1| - 0.27 11.1 1.5 21 4.9 0.0 2.9 3 0 0 3 3 3 0 Cytidylate kinase-like family HMA PF00403.21 gi|336252177|ref|YP_004595284.1| - 0.043 13.9 1.9 0.068 13.3 0.6 1.8 1 1 1 2 2 2 0 Heavy-metal-associated domain TatD_DNase PF01026.16 gi|336252178|ref|YP_004595285.1| - 1.3e-19 70.4 0.0 5.8e-18 65.0 0.0 2.0 1 1 0 1 1 1 1 TatD related DNase DUF2150 PF09920.4 gi|336252179|ref|YP_004595286.1| - 2.9e-69 232.4 9.1 3.4e-69 232.2 6.3 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2150) Lectin_N PF03954.9 gi|336252180|ref|YP_004595287.1| - 0.078 12.3 0.1 0.15 11.4 0.1 1.4 1 0 0 1 1 1 0 Hepatic lectin, N-terminal domain HMG_CoA_synt_N PF01154.12 gi|336252181|ref|YP_004595288.1| - 6.1e-27 94.2 0.0 1.1e-26 93.4 0.0 1.4 2 0 0 2 2 2 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal HMG_CoA_synt_C PF08540.5 gi|336252181|ref|YP_004595288.1| - 1.3e-23 83.9 0.0 2.2e-23 83.1 0.0 1.3 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase C terminal Eaf7 PF07904.8 gi|336252181|ref|YP_004595288.1| - 0.035 14.0 0.9 0.074 13.0 0.6 1.5 1 0 0 1 1 1 0 Chromatin modification-related protein EAF7 MAF_flag10 PF01973.13 gi|336252181|ref|YP_004595288.1| - 0.15 11.5 0.0 1.3 8.5 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function DUF115 DsbD_2 PF13386.1 gi|336252183|ref|YP_004595290.1| - 2.4e-50 171.0 12.6 2.9e-50 170.7 8.7 1.1 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region SdpI PF13630.1 gi|336252183|ref|YP_004595290.1| - 0.3 10.8 0.0 0.3 10.8 0.0 2.9 4 0 0 4 4 4 0 SdpI/YhfL protein family DUF2162 PF09930.4 gi|336252183|ref|YP_004595290.1| - 1.1 8.3 6.7 2.4 7.2 0.4 2.3 2 0 0 2 2 2 0 Predicted transporter (DUF2162) Chlorosome_CsmC PF11098.3 gi|336252183|ref|YP_004595290.1| - 3.1 7.4 6.4 0.34 10.6 1.0 1.9 2 0 0 2 2 2 0 Chlorosome envelope protein C E1-E2_ATPase PF00122.15 gi|336252184|ref|YP_004595291.1| - 1e-42 145.7 4.3 1e-42 145.7 3.0 2.0 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.21 gi|336252184|ref|YP_004595291.1| - 2.5e-32 113.0 12.6 2.5e-32 113.0 8.7 2.2 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|336252184|ref|YP_004595291.1| - 1.6e-12 47.9 0.3 4.1e-12 46.6 0.2 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|336252184|ref|YP_004595291.1| - 3.4e-11 43.1 0.0 1.5e-10 41.0 0.0 2.2 1 0 0 1 1 1 1 Heavy-metal-associated domain Hydrolase_3 PF08282.7 gi|336252184|ref|YP_004595291.1| - 0.0016 18.0 0.7 0.003 17.1 0.5 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase ATPase-cat_bd PF12156.3 gi|336252184|ref|YP_004595291.1| - 0.0028 18.1 1.1 0.0071 16.8 0.8 1.8 1 0 0 1 1 1 1 Putative metal-binding domain of cation transport ATPase UPF0118 PF01594.11 gi|336252185|ref|YP_004595292.1| - 5.4e-36 124.2 32.3 7e-36 123.8 22.4 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF20 DUF2270 PF10028.4 gi|336252186|ref|YP_004595293.1| - 5.4e-58 195.5 2.1 6.4e-58 195.2 1.5 1.0 1 0 0 1 1 1 1 Predicted integral membrane protein (DUF2270) DUF998 PF06197.8 gi|336252186|ref|YP_004595293.1| - 0.002 17.4 4.2 0.0022 17.3 0.6 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF998) DUF4131 PF13567.1 gi|336252186|ref|YP_004595293.1| - 0.15 11.4 7.2 1.5 8.1 2.8 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) Bax1-I PF01027.15 gi|336252186|ref|YP_004595293.1| - 0.15 11.6 4.6 1.9 8.0 0.5 2.1 2 0 0 2 2 2 0 Inhibitor of apoptosis-promoting Bax1 DUF418 PF04235.7 gi|336252186|ref|YP_004595293.1| - 0.17 11.5 0.2 0.17 11.5 0.1 2.0 2 1 0 2 2 2 0 Protein of unknown function (DUF418) DUF4117 PF13491.1 gi|336252186|ref|YP_004595293.1| - 0.99 8.8 7.0 1.3 8.4 2.7 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4117) DUF3592 PF12158.3 gi|336252186|ref|YP_004595293.1| - 3.3 7.4 7.4 22 4.7 0.0 3.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3592) DUF898 PF05987.8 gi|336252186|ref|YP_004595293.1| - 5.5 5.7 8.8 4.6 6.0 2.2 2.0 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF898) GDC-P PF02347.11 gi|336252187|ref|YP_004595294.1| - 6.8e-105 351.2 0.0 8.2e-105 350.9 0.0 1.0 1 0 0 1 1 1 1 Glycine cleavage system P-protein Aminotran_5 PF00266.14 gi|336252187|ref|YP_004595294.1| - 0.00023 20.0 0.0 0.00036 19.3 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|336252187|ref|YP_004595294.1| - 0.012 13.8 0.0 0.018 13.3 0.0 1.2 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.14 gi|336252188|ref|YP_004595295.1| - 5.1e-10 38.6 0.0 7.7e-10 38.0 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V GDC-P PF02347.11 gi|336252188|ref|YP_004595295.1| - 4.1e-07 29.0 0.0 3.7e-05 22.6 0.0 2.1 2 0 0 2 2 2 2 Glycine cleavage system P-protein Beta_elim_lyase PF01212.16 gi|336252188|ref|YP_004595295.1| - 3.5e-06 26.3 0.0 5.7e-06 25.6 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|336252188|ref|YP_004595295.1| - 0.009 15.0 0.0 0.015 14.3 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family zf-H2C2_2 PF13465.1 gi|336252189|ref|YP_004595296.1| - 3.4e-05 23.8 3.6 0.021 15.1 0.2 2.1 2 0 0 2 2 2 2 Zinc-finger double domain Rubredoxin PF00301.15 gi|336252189|ref|YP_004595296.1| - 0.00015 21.5 0.8 0.32 10.8 0.1 2.2 2 0 0 2 2 2 2 Rubredoxin Zn_Tnp_IS1595 PF12760.2 gi|336252189|ref|YP_004595296.1| - 0.0008 19.1 1.0 0.0011 18.7 0.7 1.2 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Lar_restr_allev PF14354.1 gi|336252189|ref|YP_004595296.1| - 0.00084 19.5 0.6 0.00093 19.4 0.4 1.1 1 0 0 1 1 1 1 Restriction alleviation protein Lar zf-ribbon_3 PF13248.1 gi|336252189|ref|YP_004595296.1| - 0.00098 18.2 1.1 0.093 11.9 0.2 2.2 2 0 0 2 2 2 1 zinc-ribbon domain zf-C2H2 PF00096.21 gi|336252189|ref|YP_004595296.1| - 0.001 19.2 2.1 0.22 11.9 0.1 2.2 2 0 0 2 2 2 1 Zinc finger, C2H2 type zf-RING_3 PF14369.1 gi|336252189|ref|YP_004595296.1| - 0.0011 18.9 0.4 0.096 12.6 0.0 2.2 2 0 0 2 2 2 1 zinc-finger Zn-ribbon_8 PF09723.5 gi|336252189|ref|YP_004595296.1| - 0.0075 16.2 0.3 0.6 10.1 0.0 2.1 2 0 0 2 2 2 1 Zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|336252189|ref|YP_004595296.1| - 0.0082 15.4 1.1 0.13 11.6 0.1 2.1 2 0 0 2 2 2 1 TFIIB zinc-binding zf-DNA_Pol PF08996.5 gi|336252189|ref|YP_004595296.1| - 0.0089 15.4 0.1 0.0094 15.3 0.0 1.0 1 0 0 1 1 1 1 DNA Polymerase alpha zinc finger DUF1272 PF06906.6 gi|336252189|ref|YP_004595296.1| - 0.016 15.0 1.9 1.8 8.4 0.3 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1272) zf-ISL3 PF14690.1 gi|336252189|ref|YP_004595296.1| - 0.019 15.0 3.8 0.47 10.5 0.1 2.1 1 1 2 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn_Tnp_IS1 PF03811.8 gi|336252189|ref|YP_004595296.1| - 0.022 14.2 0.1 5.2 6.6 0.0 2.2 2 0 0 2 2 2 0 InsA N-terminal domain TerY-C PF15616.1 gi|336252189|ref|YP_004595296.1| - 0.022 14.6 0.1 0.024 14.5 0.1 1.1 1 0 0 1 1 1 0 TerY-C metal binding domain TFIIS_C PF01096.13 gi|336252189|ref|YP_004595296.1| - 0.033 13.8 2.6 0.088 12.4 0.2 2.0 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DUF983 PF06170.7 gi|336252189|ref|YP_004595296.1| - 0.046 13.8 2.5 0.47 10.6 0.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF983) Ribosomal_S27e PF01667.12 gi|336252189|ref|YP_004595296.1| - 0.054 13.0 1.3 0.4 10.2 0.0 2.0 1 1 1 2 2 2 0 Ribosomal protein S27 DZR PF12773.2 gi|336252189|ref|YP_004595296.1| - 0.06 13.1 1.4 0.22 11.3 0.9 1.8 1 1 0 1 1 1 0 Double zinc ribbon Opy2 PF09463.5 gi|336252189|ref|YP_004595296.1| - 0.072 13.1 0.6 7.1 6.8 0.1 2.2 2 0 0 2 2 2 0 Opy2 protein HypA PF01155.14 gi|336252189|ref|YP_004595296.1| - 0.11 12.2 0.2 0.14 11.8 0.1 1.3 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Auto_anti-p27 PF06677.7 gi|336252189|ref|YP_004595296.1| - 0.12 12.1 1.1 9.1 6.1 0.2 2.2 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-LITAF-like PF10601.4 gi|336252189|ref|YP_004595296.1| - 0.13 12.1 0.6 0.98 9.3 0.1 2.0 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain zf-IS66 PF13005.2 gi|336252189|ref|YP_004595296.1| - 0.13 12.2 1.1 14 5.7 0.2 2.1 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 DUF3797 PF12677.2 gi|336252189|ref|YP_004595296.1| - 0.15 11.6 2.9 5.3 6.7 0.8 2.2 1 1 0 2 2 2 0 Domain of unknown function (DUF3797) NOB1_Zn_bind PF08772.6 gi|336252189|ref|YP_004595296.1| - 0.16 11.7 0.6 0.34 10.7 0.4 1.5 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zinc_ribbon_5 PF13719.1 gi|336252189|ref|YP_004595296.1| - 0.16 11.5 1.1 8.1 6.1 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF1610 PF07754.6 gi|336252189|ref|YP_004595296.1| - 0.17 12.0 1.0 0.17 12.0 0.7 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) RNHCP PF12647.2 gi|336252189|ref|YP_004595296.1| - 0.19 11.6 1.4 1.2 9.0 1.0 1.9 1 1 0 1 1 1 0 RNHCP domain Ribosomal_L37ae PF01780.14 gi|336252189|ref|YP_004595296.1| - 0.2 11.5 0.5 0.8 9.6 0.4 1.8 1 1 0 1 1 1 0 Ribosomal L37ae protein family CpXC PF14353.1 gi|336252189|ref|YP_004595296.1| - 0.21 11.5 2.4 9.8 6.1 1.6 2.1 1 1 0 1 1 1 0 CpXC protein zinc_ribbon_4 PF13717.1 gi|336252189|ref|YP_004595296.1| - 0.23 11.1 1.0 8.8 6.1 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.4 gi|336252189|ref|YP_004595296.1| - 0.27 10.9 7.6 3.2 7.5 1.3 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Sgf11 PF08209.6 gi|336252189|ref|YP_004595296.1| - 0.39 10.0 2.4 3.1 7.1 0.2 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zf-NADH-PPase PF09297.6 gi|336252189|ref|YP_004595296.1| - 0.45 10.0 2.7 17 5.0 0.6 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|336252189|ref|YP_004595296.1| - 0.49 10.2 4.6 3.1 7.6 3.2 2.0 1 1 0 1 1 1 0 PhnA Zinc-Ribbon DNA_ligase_ZBD PF03119.11 gi|336252189|ref|YP_004595296.1| - 1.6 8.5 4.5 19 5.0 0.0 2.3 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain DUF4379 PF14311.1 gi|336252189|ref|YP_004595296.1| - 3.6 7.4 5.2 1.3 8.9 0.4 2.0 1 1 2 3 3 3 0 Domain of unknown function (DUF4379) zinc_ribbon_2 PF13240.1 gi|336252189|ref|YP_004595296.1| - 3.7 7.1 8.1 0.67 9.5 1.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Cob_adeno_trans PF01923.13 gi|336252190|ref|YP_004595297.1| - 2.3e-59 199.8 0.0 2.6e-59 199.6 0.0 1.0 1 0 0 1 1 1 1 Cobalamin adenosyltransferase DUF1470 PF07336.6 gi|336252190|ref|YP_004595297.1| - 1.6 9.1 7.2 8.4 6.7 5.0 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF1470) HTH_20 PF12840.2 gi|336252191|ref|YP_004595298.1| - 0.00023 20.8 1.2 0.0014 18.4 0.2 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_10 PF04967.7 gi|336252192|ref|YP_004595299.1| - 3.7e-17 61.6 0.0 6.5e-17 60.8 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.11 gi|336252192|ref|YP_004595299.1| - 0.00011 21.4 0.2 0.00021 20.5 0.2 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_24 PF13412.1 gi|336252192|ref|YP_004595299.1| - 0.00013 21.2 0.2 0.00031 20.0 0.1 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|336252192|ref|YP_004595299.1| - 0.00079 19.0 0.1 0.0022 17.6 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_AsnC-type PF13404.1 gi|336252192|ref|YP_004595299.1| - 0.0014 18.1 0.9 0.0014 18.1 0.6 2.0 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|336252192|ref|YP_004595299.1| - 0.014 14.8 0.2 0.12 11.8 0.1 2.4 1 1 0 1 1 1 0 Sigma-70, region 4 HTH_3 PF01381.17 gi|336252192|ref|YP_004595299.1| - 0.089 12.6 0.3 0.38 10.6 0.1 2.2 2 1 1 3 3 3 0 Helix-turn-helix Apolipoprotein PF01442.13 gi|336252193|ref|YP_004595300.1| - 0.01 15.3 0.4 0.013 15.0 0.3 1.2 1 0 0 1 1 1 0 Apolipoprotein A1/A4/E domain DUF883 PF05957.8 gi|336252193|ref|YP_004595300.1| - 0.14 12.6 3.0 0.32 11.4 0.5 2.0 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) DUF1490 PF07371.7 gi|336252193|ref|YP_004595300.1| - 0.52 10.2 0.1 0.52 10.2 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1490) RVT_3 PF13456.1 gi|336252198|ref|YP_004595305.1| - 6.2e-22 77.1 0.0 9.4e-22 76.6 0.0 1.3 1 0 0 1 1 1 1 Reverse transcriptase-like RNase_H PF00075.19 gi|336252198|ref|YP_004595305.1| - 1.3e-13 51.4 0.0 2.1e-13 50.7 0.0 1.3 1 0 0 1 1 1 1 RNase H Radical_SAM PF04055.16 gi|336252198|ref|YP_004595305.1| - 0.12 12.4 0.0 0.23 11.6 0.0 1.4 1 1 0 1 1 1 0 Radical SAM superfamily TFIIB PF00382.14 gi|336252199|ref|YP_004595306.1| - 1.7e-48 162.2 3.5 1.2e-25 89.1 0.2 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|336252199|ref|YP_004595306.1| - 4.1e-19 67.6 3.4 7.9e-19 66.7 2.3 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding HTH_23 PF13384.1 gi|336252199|ref|YP_004595306.1| - 0.0081 15.7 0.4 0.59 9.8 0.0 3.3 3 0 0 3 3 3 1 Homeodomain-like domain RRN7 PF11781.3 gi|336252199|ref|YP_004595306.1| - 0.013 14.9 0.6 0.027 13.9 0.4 1.5 1 0 0 1 1 1 0 RNA polymerase I-specific transcription initiation factor Rrn7 A2L_zn_ribbon PF08792.5 gi|336252199|ref|YP_004595306.1| - 0.015 14.7 0.6 0.035 13.5 0.4 1.6 1 0 0 1 1 1 0 A2L zinc ribbon domain HARE-HTH PF05066.8 gi|336252199|ref|YP_004595306.1| - 0.021 15.1 0.1 1.5 9.2 0.1 2.4 2 0 0 2 2 2 0 HB1, ASXL, restriction endonuclease HTH domain Cyclin_N PF00134.18 gi|336252199|ref|YP_004595306.1| - 0.035 13.6 0.0 0.26 10.8 0.0 2.1 1 1 1 2 2 2 0 Cyclin, N-terminal domain PhnA_Zn_Ribbon PF08274.7 gi|336252199|ref|YP_004595306.1| - 0.073 12.8 2.0 0.16 11.7 1.4 1.5 1 0 0 1 1 1 0 PhnA Zinc-Ribbon Sigma70_r4 PF04545.11 gi|336252199|ref|YP_004595306.1| - 0.084 12.2 3.2 0.3 10.4 0.0 3.3 3 1 0 3 3 3 0 Sigma-70, region 4 Pribosyltran PF00156.22 gi|336252200|ref|YP_004595307.1| - 4.2e-22 78.2 0.0 7.2e-22 77.4 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain HTH_23 PF13384.1 gi|336252200|ref|YP_004595307.1| - 0.00018 21.0 0.0 0.0026 17.3 0.0 2.2 2 0 0 2 2 2 1 Homeodomain-like domain HTH_28 PF13518.1 gi|336252200|ref|YP_004595307.1| - 0.00065 19.6 0.0 0.22 11.5 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_7 PF02796.10 gi|336252200|ref|YP_004595307.1| - 0.0022 17.8 0.0 0.0047 16.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_11 PF08279.7 gi|336252200|ref|YP_004595307.1| - 0.0097 15.5 0.2 0.059 13.0 0.1 2.3 2 0 0 2 2 2 1 HTH domain Sigma70_r4 PF04545.11 gi|336252200|ref|YP_004595307.1| - 0.022 14.0 0.1 0.043 13.1 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_38 PF13936.1 gi|336252200|ref|YP_004595307.1| - 0.023 14.2 0.5 0.28 10.7 0.0 2.5 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_24 PF13412.1 gi|336252200|ref|YP_004595307.1| - 0.032 13.5 0.1 0.092 12.1 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|336252200|ref|YP_004595307.1| - 0.071 12.7 0.0 0.47 10.1 0.0 2.3 3 0 0 3 3 3 0 MarR family CENP-B_N PF04218.8 gi|336252200|ref|YP_004595307.1| - 0.074 12.4 0.2 0.23 10.9 0.0 1.8 2 0 0 2 2 2 0 CENP-B N-terminal DNA-binding domain UPRTase PF14681.1 gi|336252200|ref|YP_004595307.1| - 0.1 11.8 0.0 0.15 11.2 0.0 1.2 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|336252200|ref|YP_004595307.1| - 0.1 11.8 0.1 0.25 10.6 0.0 1.6 2 0 0 2 2 2 0 Phosphoribosyl transferase GerE PF00196.14 gi|336252200|ref|YP_004595307.1| - 0.12 11.6 0.0 0.27 10.5 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_3 PF01381.17 gi|336252200|ref|YP_004595307.1| - 0.14 12.0 0.1 0.53 10.1 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix Hydrolase_3 PF08282.7 gi|336252201|ref|YP_004595308.1| - 9.3e-12 45.0 0.0 0.00011 21.9 0.0 2.2 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|336252201|ref|YP_004595308.1| - 6.1e-05 23.2 0.6 0.001 19.3 0.4 2.3 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HTH_10 PF04967.7 gi|336252202|ref|YP_004595309.1| - 2.6e-19 68.5 0.1 4.4e-19 67.7 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain UPF0122 PF04297.9 gi|336252202|ref|YP_004595309.1| - 0.0012 18.8 0.0 0.0026 17.7 0.0 1.5 1 0 0 1 1 1 1 Putative helix-turn-helix protein, YlxM / p13 like Sigma70_r4 PF04545.11 gi|336252202|ref|YP_004595309.1| - 0.0021 17.3 0.3 0.0053 16.0 0.2 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 MarR_2 PF12802.2 gi|336252202|ref|YP_004595309.1| - 0.0043 16.6 0.2 0.017 14.7 0.0 2.1 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.1 gi|336252202|ref|YP_004595309.1| - 0.0044 16.3 0.1 0.012 15.0 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding Sigma70_r3 PF04539.11 gi|336252202|ref|YP_004595309.1| - 0.012 15.5 1.1 0.012 15.5 0.8 2.0 2 0 0 2 2 2 0 Sigma-70 region 3 DUF4250 PF14056.1 gi|336252202|ref|YP_004595309.1| - 0.023 14.4 0.3 0.17 11.6 0.0 2.5 3 0 0 3 3 3 0 Domain of unknown function (DUF4250) HTH_30 PF13556.1 gi|336252202|ref|YP_004595309.1| - 0.032 13.8 0.1 0.27 10.8 0.1 2.4 3 0 0 3 3 3 0 PucR C-terminal helix-turn-helix domain HTH_11 PF08279.7 gi|336252202|ref|YP_004595309.1| - 0.042 13.4 0.1 0.48 10.0 0.0 2.4 2 0 0 2 2 2 0 HTH domain HTH_AsnC-type PF13404.1 gi|336252202|ref|YP_004595309.1| - 0.057 12.9 0.2 0.15 11.6 0.2 1.7 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HAD_2 PF13419.1 gi|336252203|ref|YP_004595310.1| - 2.4e-15 57.1 0.2 2e-14 54.2 0.1 2.3 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|336252203|ref|YP_004595310.1| - 4.6e-08 33.7 0.6 7.6e-06 26.4 0.0 2.1 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|336252203|ref|YP_004595310.1| - 8.3e-07 28.6 0.0 1.7e-06 27.6 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.2 gi|336252203|ref|YP_004595310.1| - 0.00037 20.7 0.1 0.0005 20.2 0.1 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Acid_PPase PF12689.2 gi|336252203|ref|YP_004595310.1| - 0.018 14.6 0.0 0.16 11.5 0.0 2.0 1 1 0 1 1 1 0 Acid Phosphatase MARVEL PF01284.18 gi|336252204|ref|YP_004595311.1| - 0.092 12.5 0.9 0.11 12.2 0.6 1.2 1 0 0 1 1 1 0 Membrane-associating domain Pantoate_transf PF02548.10 gi|336252205|ref|YP_004595312.1| - 2.3e-103 344.8 0.6 2.6e-103 344.7 0.4 1.0 1 0 0 1 1 1 1 Ketopantoate hydroxymethyltransferase PEP_mutase PF13714.1 gi|336252205|ref|YP_004595312.1| - 7.4e-07 28.6 2.1 1.2e-06 27.9 1.5 1.5 1 1 0 1 1 1 1 Phosphoenolpyruvate phosphomutase Amidohydro_2 PF04909.9 gi|336252205|ref|YP_004595312.1| - 0.067 12.7 0.6 0.15 11.6 0.4 1.6 1 1 0 1 1 1 0 Amidohydrolase DUF2244 PF10003.4 gi|336252206|ref|YP_004595313.1| - 0.072 12.4 1.6 0.085 12.2 1.1 1.0 1 0 0 1 1 1 0 Integral membrane protein (DUF2244) DUF3487 PF11990.3 gi|336252206|ref|YP_004595313.1| - 1.8 8.0 4.0 2 7.7 2.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3487) PLDc_N PF13396.1 gi|336252206|ref|YP_004595313.1| - 2.3 7.9 5.8 3.4 7.4 4.0 1.3 1 1 0 1 1 1 0 Phospholipase_D-nuclease N-terminal UbiA PF01040.13 gi|336252207|ref|YP_004595314.1| - 0.0035 16.5 0.6 0.0043 16.3 0.4 1.0 1 0 0 1 1 1 1 UbiA prenyltransferase family Exosortase_EpsH PF09721.5 gi|336252207|ref|YP_004595314.1| - 0.017 14.3 3.1 0.021 14.0 2.2 1.1 1 0 0 1 1 1 0 Transmembrane exosortase (Exosortase_EpsH) DUF1469 PF07332.6 gi|336252207|ref|YP_004595314.1| - 1.4 8.6 7.2 2.5 7.8 5.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) Abhydrolase_6 PF12697.2 gi|336252208|ref|YP_004595315.1| - 1e-34 120.4 6.9 1.2e-34 120.2 4.8 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|336252208|ref|YP_004595315.1| - 4.5e-16 58.9 0.5 1.1e-15 57.7 0.4 1.6 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|336252208|ref|YP_004595315.1| - 4.8e-14 52.4 1.6 7.9e-13 48.4 1.1 2.0 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_4 PF08386.5 gi|336252208|ref|YP_004595315.1| - 0.0006 19.6 0.0 0.0014 18.5 0.0 1.6 1 0 0 1 1 1 1 TAP-like protein Abhydrolase_2 PF02230.11 gi|336252208|ref|YP_004595315.1| - 0.012 15.0 0.0 1.4 8.3 0.0 2.9 1 1 2 3 3 3 0 Phospholipase/Carboxylesterase Esterase PF00756.15 gi|336252208|ref|YP_004595315.1| - 0.029 13.7 0.0 0.066 12.6 0.0 1.7 1 1 0 1 1 1 0 Putative esterase Hydrolase_4 PF12146.3 gi|336252208|ref|YP_004595315.1| - 0.098 12.5 2.0 0.31 10.9 0.8 2.3 2 1 0 2 2 2 0 Putative lysophospholipase NYN PF01936.13 gi|336252209|ref|YP_004595316.1| - 1.6e-18 67.4 0.0 1.8e-18 67.2 0.0 1.0 1 0 0 1 1 1 1 NYN domain Peptidase_S8 PF00082.17 gi|336252210|ref|YP_004595317.1| - 4.1e-53 180.3 13.2 7.5e-53 179.4 9.1 1.4 1 0 0 1 1 1 1 Subtilase family GCV_T PF01571.16 gi|336252211|ref|YP_004595318.1| - 1.8e-63 213.7 0.1 2.5e-63 213.2 0.0 1.2 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.6 gi|336252211|ref|YP_004595318.1| - 1.5e-25 89.0 0.4 2.7e-25 88.2 0.3 1.5 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain TrmE_N PF10396.4 gi|336252211|ref|YP_004595318.1| - 0.00053 19.9 0.0 0.057 13.3 0.0 2.3 2 0 0 2 2 2 1 GTP-binding protein TrmE N-terminus Thioesterase PF00975.15 gi|336252211|ref|YP_004595318.1| - 0.079 13.1 0.0 0.1 12.7 0.0 1.2 1 0 0 1 1 1 0 Thioesterase domain GCV_H PF01597.14 gi|336252212|ref|YP_004595319.1| - 3.8e-44 149.2 0.0 4.2e-44 149.1 0.0 1.0 1 0 0 1 1 1 1 Glycine cleavage H-protein Biotin_lipoyl PF00364.17 gi|336252212|ref|YP_004595319.1| - 0.0053 16.3 0.1 0.01 15.4 0.1 1.5 1 0 0 1 1 1 1 Biotin-requiring enzyme RnfC_N PF13375.1 gi|336252212|ref|YP_004595319.1| - 0.11 12.2 0.0 0.16 11.6 0.0 1.2 1 0 0 1 1 1 0 RnfC Barrel sandwich hybrid domain GIDE PF12483.3 gi|336252213|ref|YP_004595320.1| - 1.1e-09 37.8 0.0 1.9e-09 37.0 0.0 1.3 1 0 0 1 1 1 1 E3 Ubiquitin ligase TAT_signal PF10518.4 gi|336252214|ref|YP_004595321.1| - 5.6 7.2 6.7 15 5.8 0.0 2.3 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence HTH_31 PF13560.1 gi|336252215|ref|YP_004595322.1| - 2e-09 37.4 0.2 4.8e-09 36.2 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|336252215|ref|YP_004595322.1| - 1e-08 34.8 0.0 2.8e-08 33.4 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix HTH_19 PF12844.2 gi|336252215|ref|YP_004595322.1| - 4.3e-08 33.0 0.0 8.8e-08 32.0 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|336252215|ref|YP_004595322.1| - 0.034 13.5 0.0 0.24 10.8 0.0 2.3 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding NUMOD1 PF07453.8 gi|336252215|ref|YP_004595322.1| - 0.036 13.9 0.0 0.067 13.0 0.0 1.5 1 0 0 1 1 1 0 NUMOD1 domain MarR_2 PF12802.2 gi|336252215|ref|YP_004595322.1| - 0.065 12.9 0.0 0.16 11.6 0.0 1.7 1 0 0 1 1 1 0 MarR family HTH_11 PF08279.7 gi|336252215|ref|YP_004595322.1| - 0.077 12.6 0.0 0.21 11.2 0.0 1.7 1 0 0 1 1 1 0 HTH domain HTH_Crp_2 PF13545.1 gi|336252215|ref|YP_004595322.1| - 0.077 12.7 0.0 0.24 11.1 0.0 1.9 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_37 PF13744.1 gi|336252215|ref|YP_004595322.1| - 0.094 12.5 0.0 0.18 11.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_26 PF13443.1 gi|336252215|ref|YP_004595322.1| - 0.15 12.2 0.0 0.36 11.0 0.0 1.6 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain MoCF_biosynth PF00994.19 gi|336252216|ref|YP_004595323.1| - 2.6e-30 104.7 0.1 4e-30 104.1 0.0 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain SBP_bac_8 PF13416.1 gi|336252217|ref|YP_004595324.1| - 1.1e-16 61.3 0.1 1.5e-16 60.9 0.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|336252217|ref|YP_004595324.1| - 7.5e-15 54.9 0.0 1.1e-14 54.3 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|336252217|ref|YP_004595324.1| - 6.7e-11 42.4 0.2 9.6e-11 41.9 0.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|336252217|ref|YP_004595324.1| - 1.9e-08 34.2 0.0 3.1e-08 33.5 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein ABC_tran PF00005.22 gi|336252218|ref|YP_004595325.1| - 1.2e-34 119.5 0.0 2.2e-34 118.7 0.0 1.4 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.5 gi|336252218|ref|YP_004595325.1| - 1.1e-14 54.1 4.6 2.6e-14 52.9 0.1 3.0 2 1 1 3 3 3 2 TOBE domain AAA_21 PF13304.1 gi|336252218|ref|YP_004595325.1| - 3.8e-09 36.9 0.0 0.00026 21.0 0.0 2.2 1 1 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|336252218|ref|YP_004595325.1| - 0.0011 19.0 0.1 0.0023 17.9 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|336252218|ref|YP_004595325.1| - 0.0025 17.9 0.6 0.013 15.6 0.4 2.1 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|336252218|ref|YP_004595325.1| - 0.0041 17.0 0.1 0.021 14.6 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|336252218|ref|YP_004595325.1| - 0.0042 16.5 0.1 0.01 15.3 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|336252218|ref|YP_004595325.1| - 0.005 16.1 0.0 0.33 10.1 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|336252218|ref|YP_004595325.1| - 0.012 14.8 0.0 0.019 14.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|336252218|ref|YP_004595325.1| - 0.021 15.6 0.4 0.08 13.7 0.2 2.2 2 1 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|336252218|ref|YP_004595325.1| - 0.022 14.2 0.0 0.041 13.3 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain G-alpha PF00503.15 gi|336252218|ref|YP_004595325.1| - 0.04 12.6 0.0 0.053 12.1 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit AAA_18 PF13238.1 gi|336252218|ref|YP_004595325.1| - 0.059 13.6 0.9 0.31 11.3 0.4 2.4 1 1 1 2 2 2 0 AAA domain Myosin_N PF02736.14 gi|336252218|ref|YP_004595325.1| - 0.072 12.7 0.6 0.39 10.4 0.2 2.4 2 0 0 2 2 2 0 Myosin N-terminal SH3-like domain AAA_19 PF13245.1 gi|336252218|ref|YP_004595325.1| - 0.073 12.8 0.2 0.21 11.3 0.1 1.7 1 0 0 1 1 1 0 Part of AAA domain AAA PF00004.24 gi|336252218|ref|YP_004595325.1| - 0.093 12.9 0.8 0.96 9.6 0.6 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.1 gi|336252218|ref|YP_004595325.1| - 0.098 12.2 0.0 0.31 10.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|336252218|ref|YP_004595325.1| - 0.15 12.3 0.1 0.78 10.0 0.0 2.0 2 0 0 2 2 2 0 AAA domain BPD_transp_1 PF00528.17 gi|336252219|ref|YP_004595326.1| - 9.7e-14 51.2 16.0 9.7e-14 51.2 11.1 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|336252220|ref|YP_004595327.1| - 1.1e-16 60.9 15.9 1.1e-16 60.9 11.0 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component CcmB PF03379.8 gi|336252220|ref|YP_004595327.1| - 0.0074 15.5 5.5 0.0074 15.5 3.8 2.9 2 1 1 3 3 3 2 CcmB protein DUF3439 PF11921.3 gi|336252220|ref|YP_004595327.1| - 0.035 13.8 0.3 0.076 12.7 0.2 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF3439) DUF4064 PF13273.1 gi|336252220|ref|YP_004595327.1| - 1.9 8.6 12.1 3 8.0 0.5 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF4064) EamA PF00892.15 gi|336252221|ref|YP_004595328.1| - 1.4e-06 28.3 17.4 2e-06 27.8 12.0 1.2 1 0 0 1 1 1 1 EamA-like transporter family UPF0546 PF10639.4 gi|336252221|ref|YP_004595328.1| - 0.032 14.0 5.2 0.031 14.0 2.9 1.5 1 1 0 1 1 1 0 Uncharacterised protein family UPF0546 TPT PF03151.11 gi|336252221|ref|YP_004595328.1| - 0.058 13.0 11.6 0.091 12.4 8.0 1.3 1 1 0 1 1 1 0 Triose-phosphate Transporter family Beta-Casp PF10996.3 gi|336252222|ref|YP_004595329.1| - 1.2e-32 112.4 0.0 2.3e-32 111.5 0.0 1.5 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B PF00753.22 gi|336252222|ref|YP_004595329.1| - 7.2e-23 81.2 3.1 1.2e-22 80.4 2.1 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|336252222|ref|YP_004595329.1| - 3.1e-14 52.5 0.0 1.3e-13 50.5 0.0 2.0 2 0 0 2 2 2 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|336252222|ref|YP_004595329.1| - 9.9e-12 44.7 0.3 1.9e-11 43.9 0.1 1.6 2 0 0 2 2 2 1 Beta-lactamase superfamily domain KH_2 PF07650.12 gi|336252222|ref|YP_004595329.1| - 3.9e-08 32.7 0.0 7.1e-07 28.7 0.0 2.4 2 0 0 2 2 2 1 KH domain Lactamase_B_3 PF13483.1 gi|336252222|ref|YP_004595329.1| - 5e-05 23.0 0.0 0.0001 22.0 0.0 1.6 1 1 0 1 1 1 1 Beta-lactamase superfamily domain KH_1 PF00013.24 gi|336252222|ref|YP_004595329.1| - 0.0006 19.3 0.1 0.0026 17.3 0.0 2.1 2 0 0 2 2 2 1 KH domain KH_4 PF13083.1 gi|336252222|ref|YP_004595329.1| - 0.022 14.4 0.0 0.051 13.2 0.0 1.6 1 0 0 1 1 1 0 KH domain ABC_tran_2 PF12848.2 gi|336252224|ref|YP_004595331.1| - 0.53 10.1 9.2 0.091 12.6 3.9 1.6 2 0 0 2 2 2 0 ABC transporter Rhabdo_ncap PF00945.13 gi|336252224|ref|YP_004595331.1| - 1.1 7.7 4.2 1.8 7.0 2.9 1.3 1 0 0 1 1 1 0 Rhabdovirus nucleocapsid protein IncA PF04156.9 gi|336252224|ref|YP_004595331.1| - 1.4 8.4 7.4 7.3 6.1 2.7 2.1 2 0 0 2 2 2 0 IncA protein DUF3994 PF13159.1 gi|336252224|ref|YP_004595331.1| - 3.2 8.0 7.8 1.5 9.0 3.2 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF3994) DivIC PF04977.10 gi|336252224|ref|YP_004595331.1| - 7.8 6.0 11.2 2.2 7.8 4.5 2.0 2 0 0 2 2 2 0 Septum formation initiator DUF91 PF01939.11 gi|336252225|ref|YP_004595332.1| - 6.6e-71 238.0 0.0 7.6e-71 237.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF91 PDDEXK_4 PF14281.1 gi|336252225|ref|YP_004595332.1| - 0.14 11.9 0.0 0.2 11.4 0.0 1.2 1 0 0 1 1 1 0 PD-(D/E)XK nuclease superfamily PBP PF01161.15 gi|336252226|ref|YP_004595333.1| - 2.6e-35 121.3 0.2 3e-35 121.2 0.1 1.0 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein Calreticulin PF00262.13 gi|336252226|ref|YP_004595333.1| - 3.5 6.1 8.1 5.1 5.6 5.6 1.3 1 0 0 1 1 1 0 Calreticulin family Acetyltransf_1 PF00583.19 gi|336252227|ref|YP_004595334.1| - 1.8e-17 63.1 0.3 2.7e-17 62.5 0.2 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|336252227|ref|YP_004595334.1| - 1.3e-09 38.0 0.1 3.8e-09 36.5 0.1 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|336252227|ref|YP_004595334.1| - 6.6e-09 35.4 0.1 1.1e-08 34.7 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.1 gi|336252227|ref|YP_004595334.1| - 9.8e-08 32.0 0.9 1.3e-07 31.6 0.7 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|336252227|ref|YP_004595334.1| - 4.4e-07 30.0 0.3 5.6e-07 29.6 0.2 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|336252227|ref|YP_004595334.1| - 2.2e-05 24.3 1.6 0.00016 21.5 1.1 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|336252227|ref|YP_004595334.1| - 0.0001 22.2 0.0 0.00016 21.6 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|336252227|ref|YP_004595334.1| - 0.00019 21.5 0.1 0.00028 21.0 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|336252227|ref|YP_004595334.1| - 0.023 14.5 0.0 0.038 13.8 0.0 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase MutS_V PF00488.16 gi|336252228|ref|YP_004595335.1| - 1.8e-91 305.7 0.0 2.5e-91 305.2 0.0 1.2 1 0 0 1 1 1 1 MutS domain V MutS_III PF05192.13 gi|336252228|ref|YP_004595335.1| - 1.6e-47 161.9 5.3 5.9e-46 156.8 2.4 2.3 2 0 0 2 2 2 1 MutS domain III MutS_I PF01624.15 gi|336252228|ref|YP_004595335.1| - 1.5e-36 124.8 0.0 3e-36 123.8 0.0 1.6 1 0 0 1 1 1 1 MutS domain I MutS_IV PF05190.13 gi|336252228|ref|YP_004595335.1| - 1e-31 108.9 0.1 2.8e-31 107.5 0.1 1.8 1 0 0 1 1 1 1 MutS family domain IV MutS_II PF05188.12 gi|336252228|ref|YP_004595335.1| - 3.2e-10 40.2 0.0 2e-09 37.6 0.0 2.3 3 0 0 3 3 3 1 MutS domain II AAA_14 PF13173.1 gi|336252228|ref|YP_004595335.1| - 0.021 14.7 0.0 0.1 12.4 0.0 2.2 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|336252228|ref|YP_004595335.1| - 0.053 13.8 0.3 0.43 10.8 0.0 2.3 2 1 0 2 2 2 0 AAA domain AAA_29 PF13555.1 gi|336252228|ref|YP_004595335.1| - 0.066 12.7 0.0 0.17 11.4 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_17 PF13207.1 gi|336252228|ref|YP_004595335.1| - 2 9.2 7.9 2.3 9.0 0.0 3.7 2 1 0 2 2 2 0 AAA domain HTH_20 PF12840.2 gi|336252229|ref|YP_004595336.1| - 1.2e-21 76.2 2.9 6.7e-12 45.0 0.6 2.4 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_5 PF01022.15 gi|336252229|ref|YP_004595336.1| - 1.7e-15 56.4 0.1 1.1e-09 37.7 0.0 2.5 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|336252229|ref|YP_004595336.1| - 9.5e-14 50.8 2.1 1.5e-08 34.1 0.2 2.7 2 0 0 2 2 2 2 MarR family MarR PF01047.17 gi|336252229|ref|YP_004595336.1| - 4e-11 42.4 0.0 1.1e-06 28.1 0.0 2.6 2 0 0 2 2 2 2 MarR family HTH_24 PF13412.1 gi|336252229|ref|YP_004595336.1| - 4.9e-11 41.8 0.0 0.00024 20.4 0.0 2.3 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|336252229|ref|YP_004595336.1| - 4.3e-09 35.8 0.1 0.00095 18.7 0.0 2.5 2 0 0 2 2 2 2 IclR helix-turn-helix domain Fe_dep_repress PF01325.14 gi|336252229|ref|YP_004595336.1| - 4.2e-08 33.0 0.0 4.1e-05 23.4 0.0 2.6 3 0 0 3 3 2 1 Iron dependent repressor, N-terminal DNA binding domain Penicillinase_R PF03965.11 gi|336252229|ref|YP_004595336.1| - 1.4e-07 31.6 0.0 0.0003 20.8 0.0 2.4 2 0 0 2 2 2 2 Penicillinase repressor TrmB PF01978.14 gi|336252229|ref|YP_004595336.1| - 4.9e-07 29.3 0.0 0.0011 18.6 0.0 2.4 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|336252229|ref|YP_004595336.1| - 4.1e-06 26.3 0.0 0.074 12.7 0.0 2.4 2 0 0 2 2 2 2 HTH domain HTH_29 PF13551.1 gi|336252229|ref|YP_004595336.1| - 0.0001 22.4 0.4 0.087 12.9 0.0 2.9 1 1 2 3 3 3 1 Winged helix-turn helix HTH_DeoR PF08220.7 gi|336252229|ref|YP_004595336.1| - 0.00036 20.0 0.1 0.08 12.4 0.0 2.4 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_12 PF08461.5 gi|336252229|ref|YP_004595336.1| - 0.0004 20.0 0.0 0.57 9.9 0.0 2.6 2 0 0 2 2 2 2 Ribonuclease R winged-helix domain HTH_27 PF13463.1 gi|336252229|ref|YP_004595336.1| - 0.00045 20.4 0.1 0.044 14.0 0.0 2.6 2 0 0 2 2 2 1 Winged helix DNA-binding domain GntR PF00392.16 gi|336252229|ref|YP_004595336.1| - 0.0012 18.2 0.1 0.87 9.0 0.0 2.5 2 0 0 2 2 2 2 Bacterial regulatory proteins, gntR family HTH_Crp_2 PF13545.1 gi|336252229|ref|YP_004595336.1| - 0.0013 18.5 0.0 0.18 11.6 0.0 2.4 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_23 PF13384.1 gi|336252229|ref|YP_004595336.1| - 0.0019 17.7 0.0 1.2 8.8 0.0 2.6 2 0 0 2 2 2 1 Homeodomain-like domain FUR PF01475.14 gi|336252229|ref|YP_004595336.1| - 0.0035 17.2 0.0 0.0084 16.0 0.0 1.6 1 0 0 1 1 1 1 Ferric uptake regulator family HTH_38 PF13936.1 gi|336252229|ref|YP_004595336.1| - 0.0035 16.8 0.0 0.18 11.3 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain Rrf2 PF02082.15 gi|336252229|ref|YP_004595336.1| - 0.0042 17.1 0.0 0.78 9.8 0.0 2.4 2 0 0 2 2 2 1 Transcriptional regulator MerR_1 PF13411.1 gi|336252229|ref|YP_004595336.1| - 0.0044 16.7 0.0 0.12 12.2 0.0 2.3 2 0 0 2 2 2 1 MerR HTH family regulatory protein Apolipoprotein PF01442.13 gi|336252229|ref|YP_004595336.1| - 0.005 16.3 0.5 0.0087 15.5 0.4 1.3 1 0 0 1 1 1 1 Apolipoprotein A1/A4/E domain DUF2250 PF10007.4 gi|336252229|ref|YP_004595336.1| - 0.0082 16.0 0.0 1.4 8.8 0.0 2.3 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_1 PF00126.22 gi|336252229|ref|YP_004595336.1| - 0.015 15.0 0.0 0.71 9.6 0.0 3.0 3 0 0 3 3 3 0 Bacterial regulatory helix-turn-helix protein, lysR family RP-C PF03428.8 gi|336252229|ref|YP_004595336.1| - 0.018 14.5 0.1 2.4 7.5 0.0 2.3 1 1 1 2 2 2 0 Replication protein C N-terminal domain B-block_TFIIIC PF04182.7 gi|336252229|ref|YP_004595336.1| - 0.02 14.7 0.0 1.2 9.0 0.0 2.4 2 0 0 2 2 2 0 B-block binding subunit of TFIIIC DUF2300 PF10062.4 gi|336252229|ref|YP_004595336.1| - 0.024 14.3 0.0 0.045 13.4 0.0 1.4 1 0 0 1 1 1 0 Predicted secreted protein (DUF2300) LexA_DNA_bind PF01726.11 gi|336252229|ref|YP_004595336.1| - 0.05 13.1 0.0 1.7 8.2 0.0 2.4 2 0 0 2 2 2 0 LexA DNA binding domain zf-CHY PF05495.7 gi|336252230|ref|YP_004595337.1| - 2.5e-18 65.9 5.3 3.2e-18 65.6 3.7 1.1 1 0 0 1 1 1 1 CHY zinc finger zf-HC5HC2H_2 PF13832.1 gi|336252230|ref|YP_004595337.1| - 0.11 12.4 2.1 0.12 12.3 1.0 1.5 1 1 0 1 1 1 0 PHD-zinc-finger like domain DZR PF12773.2 gi|336252230|ref|YP_004595337.1| - 0.12 12.2 5.9 0.18 11.6 2.4 2.2 1 1 0 1 1 1 0 Double zinc ribbon zf-RING_3 PF14369.1 gi|336252230|ref|YP_004595337.1| - 0.13 12.2 0.9 0.13 12.2 0.6 3.1 3 0 0 3 3 3 0 zinc-finger zf-HIT PF04438.11 gi|336252230|ref|YP_004595337.1| - 0.17 11.5 7.7 0.16 11.6 2.5 2.8 2 1 0 2 2 2 0 HIT zinc finger zf-HC5HC2H PF13771.1 gi|336252230|ref|YP_004595337.1| - 0.46 10.6 3.8 0.49 10.5 2.0 1.7 1 1 1 2 2 2 0 PHD-like zinc-binding domain zf-C2H2_6 PF13912.1 gi|336252230|ref|YP_004595337.1| - 3.1 7.8 6.5 6.7 6.7 0.0 3.3 3 0 0 3 3 3 0 C2H2-type zinc finger HypA PF01155.14 gi|336252230|ref|YP_004595337.1| - 3.4 7.3 5.8 0.38 10.4 0.4 1.9 2 0 0 2 2 2 0 Hydrogenase expression/synthesis hypA family C1_3 PF07649.7 gi|336252230|ref|YP_004595337.1| - 4.2 7.5 12.4 0.091 12.8 1.9 2.8 2 1 0 2 2 2 0 C1-like domain GvpO PF05800.6 gi|336252231|ref|YP_004595338.1| - 9.5e-29 99.2 1.6 9.5e-29 99.2 1.1 1.7 1 1 1 2 2 2 1 Gas vesicle synthesis protein GvpO zf-SAP30 PF13866.1 gi|336252231|ref|YP_004595338.1| - 0.014 15.0 0.2 0.025 14.2 0.1 1.3 1 0 0 1 1 1 0 SAP30 zinc-finger zf-C3Hc3H PF13891.1 gi|336252231|ref|YP_004595338.1| - 0.17 12.0 1.7 0.29 11.2 1.2 1.4 1 0 0 1 1 1 0 Potential DNA-binding domain DUF2201_N PF13203.1 gi|336252231|ref|YP_004595338.1| - 0.39 9.8 3.7 0.54 9.3 2.6 1.3 1 0 0 1 1 1 0 Putative metallopeptidase domain RR_TM4-6 PF06459.7 gi|336252231|ref|YP_004595338.1| - 7.3 6.3 7.7 8.6 6.1 5.3 1.1 1 0 0 1 1 1 0 Ryanodine Receptor TM 4-6 AAA_5 PF07728.9 gi|336252232|ref|YP_004595339.1| - 3.2e-16 59.3 0.0 9.2e-15 54.5 0.0 2.3 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|336252232|ref|YP_004595339.1| - 5.1e-05 23.4 0.0 9.6e-05 22.5 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.1 gi|336252232|ref|YP_004595339.1| - 5.6e-05 22.6 0.2 0.00019 20.8 0.0 2.0 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.12 gi|336252232|ref|YP_004595339.1| - 0.0001 21.7 0.0 0.00018 20.9 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein Sigma54_activ_2 PF14532.1 gi|336252232|ref|YP_004595339.1| - 0.00019 21.5 0.0 0.01 15.8 0.0 2.3 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_3 PF07726.6 gi|336252232|ref|YP_004595339.1| - 0.0022 17.5 0.0 0.0049 16.4 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) PhoH PF02562.11 gi|336252232|ref|YP_004595339.1| - 0.0046 16.2 0.0 0.011 15.0 0.0 1.6 1 0 0 1 1 1 1 PhoH-like protein Sigma54_activat PF00158.21 gi|336252232|ref|YP_004595339.1| - 0.0075 15.7 0.0 1.2 8.5 0.0 2.2 2 0 0 2 2 2 1 Sigma-54 interaction domain Arch_ATPase PF01637.13 gi|336252232|ref|YP_004595339.1| - 0.0077 15.9 0.0 0.038 13.6 0.0 1.9 2 0 0 2 2 2 1 Archaeal ATPase TIP49 PF06068.8 gi|336252232|ref|YP_004595339.1| - 0.014 14.1 0.1 0.72 8.5 0.0 2.1 2 0 0 2 2 2 0 TIP49 C-terminus Zeta_toxin PF06414.7 gi|336252232|ref|YP_004595339.1| - 0.016 14.3 0.0 0.042 12.9 0.0 1.7 1 0 0 1 1 1 0 Zeta toxin AAA_33 PF13671.1 gi|336252232|ref|YP_004595339.1| - 0.03 14.2 0.1 0.13 12.1 0.0 2.2 2 1 0 2 2 2 0 AAA domain IPT PF01745.11 gi|336252232|ref|YP_004595339.1| - 0.031 13.4 0.0 0.048 12.8 0.0 1.2 1 0 0 1 1 1 0 Isopentenyl transferase AAA_16 PF13191.1 gi|336252232|ref|YP_004595339.1| - 0.068 13.1 0.0 0.19 11.7 0.0 1.7 1 0 0 1 1 1 0 AAA ATPase domain AAA_19 PF13245.1 gi|336252232|ref|YP_004595339.1| - 0.087 12.5 0.2 0.25 11.1 0.1 1.8 1 0 0 1 1 1 0 Part of AAA domain CbbQ_C PF08406.5 gi|336252232|ref|YP_004595339.1| - 0.089 12.8 0.4 0.16 11.9 0.3 1.4 1 0 0 1 1 1 0 CbbQ/NirQ/NorQ C-terminal AAA_14 PF13173.1 gi|336252232|ref|YP_004595339.1| - 0.096 12.5 0.0 0.17 11.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|336252232|ref|YP_004595339.1| - 0.097 12.9 0.0 0.16 12.3 0.0 1.6 1 1 0 1 1 1 0 ABC transporter Gas_vesicle PF00741.13 gi|336252233|ref|YP_004595340.1| - 7e-18 64.2 7.9 9.1e-18 63.8 5.5 1.2 1 0 0 1 1 1 1 Gas vesicle protein PhoU_div PF01865.11 gi|336252233|ref|YP_004595340.1| - 0.031 13.4 0.3 0.044 12.9 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function DUF47 GvpL_GvpF PF06386.6 gi|336252234|ref|YP_004595341.1| - 5.3e-53 180.1 0.9 5.3e-32 111.3 0.0 2.0 1 1 1 2 2 2 2 Gas vesicle synthesis protein GvpL/GvpF GvpG PF05120.7 gi|336252235|ref|YP_004595342.1| - 4.3e-07 29.6 2.4 5.1e-07 29.4 1.7 1.1 1 0 0 1 1 1 1 Gas vesicle protein G THOC7 PF05615.8 gi|336252235|ref|YP_004595342.1| - 0.0033 17.6 1.6 0.0037 17.5 1.1 1.1 1 0 0 1 1 1 1 Tho complex subunit 7 Radial_spoke_3 PF06098.6 gi|336252235|ref|YP_004595342.1| - 0.24 10.3 3.8 0.27 10.1 2.6 1.1 1 0 0 1 1 1 0 Radial spoke protein 3 SHOCT PF09851.4 gi|336252235|ref|YP_004595342.1| - 1.2 8.6 10.1 0.19 11.2 3.0 2.7 3 0 0 3 3 3 0 Short C-terminal domain HSP20 PF00011.16 gi|336252236|ref|YP_004595343.1| - 0.00041 20.1 0.1 0.048 13.5 0.0 2.4 1 1 1 2 2 2 2 Hsp20/alpha crystallin family UPF0158 PF03682.8 gi|336252237|ref|YP_004595344.1| - 0.023 14.2 0.6 0.056 13.0 0.0 1.9 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0158) MTBP_N PF14918.1 gi|336252237|ref|YP_004595344.1| - 0.15 11.4 0.9 0.38 10.1 0.6 1.6 1 0 0 1 1 1 0 MDM2-binding Gas_vesicle PF00741.13 gi|336252238|ref|YP_004595345.1| - 2.4e-14 52.8 3.8 4.5e-14 52.0 2.6 1.4 1 0 0 1 1 1 1 Gas vesicle protein GvpK PF05121.7 gi|336252239|ref|YP_004595346.1| - 3.5e-24 84.4 5.7 4.3e-24 84.1 3.9 1.1 1 0 0 1 1 1 1 Gas vesicle protein K DUF2730 PF10805.3 gi|336252239|ref|YP_004595346.1| - 0.031 14.0 0.0 0.042 13.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2730) Phage_GP20 PF06810.6 gi|336252239|ref|YP_004595346.1| - 0.08 12.3 0.2 0.1 12.0 0.2 1.2 1 0 0 1 1 1 0 Phage minor structural protein GP20 FlxA PF14282.1 gi|336252239|ref|YP_004595346.1| - 0.14 12.1 0.0 0.19 11.6 0.0 1.2 1 0 0 1 1 1 0 FlxA-like protein Halogen_Hydrol PF10112.4 gi|336252239|ref|YP_004595346.1| - 0.16 11.3 0.1 0.4 10.0 0.0 1.6 1 1 1 2 2 2 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein GvpL_GvpF PF06386.6 gi|336252240|ref|YP_004595347.1| - 1.9e-63 214.3 0.0 2.3e-63 214.0 0.0 1.1 1 0 0 1 1 1 1 Gas vesicle synthesis protein GvpL/GvpF Gas_vesicle PF00741.13 gi|336252241|ref|YP_004595348.1| - 4.9e-11 42.3 9.4 6.1e-11 42.0 6.5 1.1 1 0 0 1 1 1 1 Gas vesicle protein zf-CCHC_2 PF13696.1 gi|336252242|ref|YP_004595349.1| - 0.1 12.1 0.2 0.19 11.2 0.1 1.4 1 0 0 1 1 1 0 Zinc knuckle Cytidylate_kin2 PF13189.1 gi|336252242|ref|YP_004595349.1| - 0.11 12.4 0.0 0.11 12.4 0.0 1.1 1 0 0 1 1 1 0 Cytidylate kinase-like family zf-nanos PF05741.8 gi|336252242|ref|YP_004595349.1| - 0.11 12.4 0.7 0.25 11.3 0.5 1.7 1 1 0 1 1 1 0 Nanos RNA binding domain A2L_zn_ribbon PF08792.5 gi|336252242|ref|YP_004595349.1| - 0.18 11.3 1.3 5.7 6.5 0.2 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain Rubredoxin PF00301.15 gi|336252242|ref|YP_004595349.1| - 1.5 8.7 4.8 0.84 9.5 0.9 2.2 2 1 0 2 2 2 0 Rubredoxin DUF1049 PF06305.6 gi|336252243|ref|YP_004595350.1| - 0.11 12.0 0.1 0.28 10.7 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1049) PSI_PsaJ PF01701.13 gi|336252243|ref|YP_004595350.1| - 0.17 11.6 0.3 0.17 11.6 0.2 1.5 2 0 0 2 2 2 0 Photosystem I reaction centre subunit IX / PsaJ Molybdopterin PF00384.17 gi|336252246|ref|YP_004595353.1| - 2.5e-75 253.8 0.0 3.1e-75 253.5 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|336252246|ref|YP_004595353.1| - 1.4e-29 102.1 0.1 3.2e-29 100.9 0.1 1.6 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|336252246|ref|YP_004595353.1| - 3.3e-14 52.4 0.7 8e-14 51.1 0.5 1.7 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain CSD PF00313.17 gi|336252247|ref|YP_004595354.1| - 1.9e-19 69.1 0.4 2.1e-19 69.0 0.3 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain S1-like PF14444.1 gi|336252247|ref|YP_004595354.1| - 0.018 14.7 1.3 0.038 13.7 0.8 1.6 1 1 0 1 1 1 0 S1-like OB_RNB PF08206.6 gi|336252247|ref|YP_004595354.1| - 0.076 12.5 2.8 0.1 12.1 2.0 1.3 1 0 0 1 1 1 0 Ribonuclease B OB domain Glyoxalase_2 PF12681.2 gi|336252248|ref|YP_004595355.1| - 9.7e-13 48.6 0.9 1.2e-12 48.3 0.6 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.20 gi|336252248|ref|YP_004595355.1| - 1.3e-10 41.3 0.5 2.5e-10 40.4 0.4 1.5 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.1 gi|336252248|ref|YP_004595355.1| - 0.00045 20.2 0.1 0.00061 19.7 0.1 1.2 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NMT1 PF09084.6 gi|336252249|ref|YP_004595356.1| - 1.3e-33 116.4 0.0 2.2e-33 115.7 0.0 1.4 1 0 0 1 1 1 1 NMT1/THI5 like NMT1_2 PF13379.1 gi|336252249|ref|YP_004595356.1| - 9e-08 31.8 0.1 3.4e-07 29.9 0.1 1.9 1 1 0 1 1 1 1 NMT1-like family Phosphonate-bd PF12974.2 gi|336252249|ref|YP_004595356.1| - 1.1e-05 24.9 0.1 2.2e-05 24.0 0.1 1.6 2 0 0 2 2 2 1 ABC transporter, phosphonate, periplasmic substrate-binding protein NMT1 PF09084.6 gi|336252250|ref|YP_004595357.1| - 6.9e-10 38.8 0.0 1.1e-09 38.2 0.0 1.2 1 0 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.2 gi|336252250|ref|YP_004595357.1| - 6.8e-05 22.3 0.0 9.2e-05 21.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein SBP_bac_3 PF00497.15 gi|336252250|ref|YP_004595357.1| - 0.001 18.3 0.0 0.0015 17.8 0.0 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 NMT1_2 PF13379.1 gi|336252250|ref|YP_004595357.1| - 0.1 11.9 0.0 0.44 9.8 0.0 1.9 1 1 0 1 1 1 0 NMT1-like family NMT1 PF09084.6 gi|336252251|ref|YP_004595358.1| - 2.8e-11 43.4 0.0 4.7e-09 36.1 0.0 3.0 1 1 0 1 1 1 1 NMT1/THI5 like NMT1_2 PF13379.1 gi|336252251|ref|YP_004595358.1| - 6e-06 25.8 0.0 0.074 12.4 0.0 3.0 2 1 0 2 2 2 2 NMT1-like family SBP_bac_3 PF00497.15 gi|336252251|ref|YP_004595358.1| - 0.00032 20.0 0.0 0.00063 19.0 0.0 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Cupin_2 PF07883.6 gi|336252252|ref|YP_004595359.1| - 1.9e-21 75.3 0.8 2.4e-21 74.9 0.5 1.1 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|336252252|ref|YP_004595359.1| - 3.7e-07 29.8 0.1 4.7e-07 29.5 0.1 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_3 PF05899.7 gi|336252252|ref|YP_004595359.1| - 5.7e-06 25.6 0.0 7.3e-06 25.2 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF861) Cupin_1 PF00190.17 gi|336252252|ref|YP_004595359.1| - 4.1e-05 23.0 0.0 5.4e-05 22.6 0.0 1.1 1 0 0 1 1 1 1 Cupin MannoseP_isomer PF01050.13 gi|336252252|ref|YP_004595359.1| - 0.0024 17.4 0.0 0.0032 17.1 0.0 1.2 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Cupin_6 PF12852.2 gi|336252252|ref|YP_004595359.1| - 0.0038 16.8 0.0 0.0038 16.8 0.0 1.1 1 0 0 1 1 1 1 Cupin Cupin_7 PF12973.2 gi|336252252|ref|YP_004595359.1| - 0.0044 16.8 0.0 0.0055 16.5 0.0 1.3 1 0 0 1 1 1 1 ChrR Cupin-like domain EutQ PF06249.7 gi|336252252|ref|YP_004595359.1| - 0.042 13.3 0.0 0.055 13.0 0.0 1.2 1 0 0 1 1 1 0 Ethanolamine utilisation protein EutQ CENP-C_C PF11699.3 gi|336252252|ref|YP_004595359.1| - 0.097 12.6 0.0 0.12 12.3 0.0 1.1 1 0 0 1 1 1 0 Mif2/CENP-C like NMT1 PF09084.6 gi|336252254|ref|YP_004595361.1| - 1.1e-34 119.9 0.0 1.6e-34 119.4 0.0 1.2 1 0 0 1 1 1 1 NMT1/THI5 like NMT1_2 PF13379.1 gi|336252254|ref|YP_004595361.1| - 5.2e-07 29.3 0.2 2.7e-05 23.6 0.1 3.1 1 1 0 1 1 1 1 NMT1-like family UCR_Fe-S_N PF10399.4 gi|336252254|ref|YP_004595361.1| - 0.34 10.1 2.6 0.97 8.6 1.8 1.7 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal BPD_transp_1 PF00528.17 gi|336252255|ref|YP_004595362.1| - 3.7e-21 75.4 12.7 3.7e-21 75.4 8.8 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|336252256|ref|YP_004595363.1| - 5.2e-18 65.2 10.9 5.2e-18 65.2 7.6 1.5 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component PC_rep PF01851.17 gi|336252256|ref|YP_004595363.1| - 2.3 8.6 4.8 1.7e+02 2.7 0.2 4.1 4 0 0 4 4 4 0 Proteasome/cyclosome repeat ABC_tran PF00005.22 gi|336252257|ref|YP_004595364.1| - 4.5e-30 104.7 0.0 8.3e-30 103.8 0.0 1.4 2 0 0 2 2 1 1 ABC transporter AAA_21 PF13304.1 gi|336252257|ref|YP_004595364.1| - 1.6e-07 31.6 0.0 0.0052 16.7 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|336252257|ref|YP_004595364.1| - 4.4e-05 23.5 0.1 7.6e-05 22.7 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|336252257|ref|YP_004595364.1| - 0.0004 20.5 0.3 0.0017 18.5 0.2 2.0 1 1 0 1 1 1 1 AAA domain ABC_ATPase PF09818.4 gi|336252257|ref|YP_004595364.1| - 0.00062 18.4 0.1 0.21 10.1 0.0 2.6 2 1 0 2 2 2 2 Predicted ATPase of the ABC class DUF258 PF03193.11 gi|336252257|ref|YP_004595364.1| - 0.0014 17.8 0.0 0.0022 17.2 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_33 PF13671.1 gi|336252257|ref|YP_004595364.1| - 0.0016 18.2 0.0 0.0029 17.4 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|336252257|ref|YP_004595364.1| - 0.0033 16.8 0.1 0.012 15.0 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.1 gi|336252257|ref|YP_004595364.1| - 0.0066 16.0 0.0 0.02 14.4 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|336252257|ref|YP_004595364.1| - 0.0082 16.0 0.0 0.045 13.6 0.0 2.2 2 0 0 2 2 2 1 AAA domain NACHT PF05729.7 gi|336252257|ref|YP_004595364.1| - 0.0092 15.6 0.2 0.022 14.4 0.2 1.6 1 0 0 1 1 1 1 NACHT domain AAA_29 PF13555.1 gi|336252257|ref|YP_004595364.1| - 0.011 15.3 0.0 0.02 14.4 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain NB-ARC PF00931.17 gi|336252257|ref|YP_004595364.1| - 0.011 14.5 0.0 0.018 13.8 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain Arch_ATPase PF01637.13 gi|336252257|ref|YP_004595364.1| - 0.014 15.0 0.0 0.028 14.1 0.0 1.5 1 0 0 1 1 1 0 Archaeal ATPase AAA PF00004.24 gi|336252257|ref|YP_004595364.1| - 0.016 15.4 0.1 0.077 13.1 0.0 2.1 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) PIG-L PF02585.12 gi|336252257|ref|YP_004595364.1| - 0.016 15.7 0.0 0.039 14.4 0.0 1.8 1 1 0 1 1 1 0 GlcNAc-PI de-N-acetylase SMC_N PF02463.14 gi|336252257|ref|YP_004595364.1| - 0.032 13.4 0.0 0.9 8.7 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_28 PF13521.1 gi|336252257|ref|YP_004595364.1| - 0.036 14.0 0.5 0.15 11.9 0.0 2.2 2 1 1 3 3 3 0 AAA domain MobB PF03205.9 gi|336252257|ref|YP_004595364.1| - 0.051 13.2 0.4 0.12 12.0 0.3 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_23 PF13476.1 gi|336252257|ref|YP_004595364.1| - 0.073 13.3 0.1 0.1 12.8 0.1 1.2 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|336252257|ref|YP_004595364.1| - 0.076 12.4 0.1 0.2 11.0 0.0 1.6 2 0 0 2 2 2 0 AAA-like domain AAA_24 PF13479.1 gi|336252257|ref|YP_004595364.1| - 0.081 12.5 0.2 0.16 11.5 0.1 1.4 1 0 0 1 1 1 0 AAA domain PduV-EutP PF10662.4 gi|336252257|ref|YP_004595364.1| - 0.1 12.0 0.1 0.18 11.2 0.1 1.3 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_19 PF13245.1 gi|336252257|ref|YP_004595364.1| - 0.11 12.2 1.3 0.17 11.6 0.1 1.9 2 0 0 2 2 1 0 Part of AAA domain Miro PF08477.8 gi|336252257|ref|YP_004595364.1| - 0.13 12.8 0.0 0.26 11.8 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein AAA_17 PF13207.1 gi|336252257|ref|YP_004595364.1| - 0.15 12.8 1.0 0.15 12.8 0.7 2.3 2 2 0 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|336252257|ref|YP_004595364.1| - 0.16 12.2 0.4 0.42 10.9 0.3 1.7 1 0 0 1 1 1 0 AAA domain NMT1 PF09084.6 gi|336252258|ref|YP_004595365.1| - 3.9e-29 101.8 0.0 5.4e-29 101.3 0.0 1.1 1 0 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.2 gi|336252258|ref|YP_004595365.1| - 1.1e-06 28.2 0.0 1.8e-06 27.5 0.0 1.5 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein MarR_2 PF12802.2 gi|336252258|ref|YP_004595365.1| - 0.00084 18.9 2.7 0.0095 15.5 0.8 2.7 2 0 0 2 2 2 1 MarR family NMT1_2 PF13379.1 gi|336252258|ref|YP_004595365.1| - 0.056 12.8 0.0 0.12 11.7 0.0 1.6 1 0 0 1 1 1 0 NMT1-like family PQQ PF01011.16 gi|336252260|ref|YP_004595367.1| - 3.7e-32 108.2 8.5 7.9e-05 22.0 0.0 7.8 7 0 0 7 7 7 6 PQQ enzyme repeat PQQ_2 PF13360.1 gi|336252260|ref|YP_004595367.1| - 1e-24 87.3 6.8 1.1e-12 47.9 0.1 3.4 2 1 1 3 3 3 3 PQQ-like domain PQQ_3 PF13570.1 gi|336252260|ref|YP_004595367.1| - 6.3e-11 42.1 28.8 0.00047 20.3 0.1 7.4 8 1 0 8 8 8 4 PQQ-like domain B_lectin PF01453.19 gi|336252260|ref|YP_004595367.1| - 0.018 14.9 0.4 8.1 6.3 0.0 2.5 2 0 0 2 2 2 0 D-mannose binding lectin Copper-bind PF00127.15 gi|336252261|ref|YP_004595368.1| - 1.4e-09 38.0 0.2 5.1e-08 33.0 0.0 2.9 2 1 0 2 2 2 1 Copper binding proteins, plastocyanin/azurin family TAT_signal PF10518.4 gi|336252261|ref|YP_004595368.1| - 0.0017 18.2 2.5 0.0037 17.1 1.7 1.6 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Gp5_C PF06715.7 gi|336252261|ref|YP_004595368.1| - 0.0097 15.7 5.3 0.0097 15.7 3.7 5.9 6 2 1 7 7 7 2 Gp5 C-terminal repeat (3 copies) PEGA PF08308.6 gi|336252261|ref|YP_004595368.1| - 0.085 12.6 4.6 0.52 10.1 0.0 4.1 5 0 0 5 5 5 0 PEGA domain DUF336 PF03928.9 gi|336252262|ref|YP_004595369.1| - 1.9e-38 131.2 0.2 2.1e-38 131.0 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF336) ADH_N PF08240.7 gi|336252263|ref|YP_004595370.1| - 1e-26 92.8 0.4 1.8e-26 92.0 0.3 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|336252263|ref|YP_004595370.1| - 2.6e-11 43.1 0.0 5.4e-11 42.1 0.0 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N_assoc PF13823.1 gi|336252263|ref|YP_004595370.1| - 9.6e-10 37.9 1.0 2.6e-09 36.5 0.7 1.8 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-associated Methyltransf_18 PF12847.2 gi|336252263|ref|YP_004595370.1| - 0.00015 22.3 0.0 0.00038 20.9 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Shikimate_DH PF01488.15 gi|336252263|ref|YP_004595370.1| - 0.0012 18.9 0.1 0.027 14.5 0.0 2.2 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase HI0933_like PF03486.9 gi|336252263|ref|YP_004595370.1| - 0.0031 16.0 0.1 0.021 13.3 0.0 1.9 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_3 PF13738.1 gi|336252263|ref|YP_004595370.1| - 0.13 12.3 0.0 0.21 11.6 0.0 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase HATPase_c PF02518.21 gi|336252264|ref|YP_004595371.1| - 2.8e-31 107.5 0.1 8.4e-31 105.9 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|336252264|ref|YP_004595371.1| - 5.2e-14 52.4 0.0 1.6e-13 50.8 0.0 1.9 1 0 0 1 1 1 1 PAS domain GAF PF01590.21 gi|336252264|ref|YP_004595371.1| - 1.4e-12 47.9 0.5 3.7e-12 46.6 0.3 1.8 1 0 0 1 1 1 1 GAF domain PAS_4 PF08448.5 gi|336252264|ref|YP_004595371.1| - 6.3e-10 39.0 0.1 2.3e-09 37.2 0.1 2.0 1 0 0 1 1 1 1 PAS fold HisKA PF00512.20 gi|336252264|ref|YP_004595371.1| - 1.3e-09 37.8 5.3 2.8e-09 36.8 0.0 3.6 2 1 1 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS PF00989.19 gi|336252264|ref|YP_004595371.1| - 2.6e-09 36.8 0.0 8.9e-09 35.1 0.0 2.0 1 0 0 1 1 1 1 PAS fold GAF_2 PF13185.1 gi|336252264|ref|YP_004595371.1| - 3.3e-08 34.1 1.9 1.7e-07 31.8 0.3 2.9 2 0 0 2 2 2 1 GAF domain GAF_3 PF13492.1 gi|336252264|ref|YP_004595371.1| - 3.6e-07 30.3 0.1 1.2e-06 28.6 0.1 2.0 1 0 0 1 1 1 1 GAF domain PAS_3 PF08447.6 gi|336252264|ref|YP_004595371.1| - 7.3e-07 29.1 0.0 3.7e-05 23.7 0.0 2.8 2 0 0 2 2 2 1 PAS fold HATPase_c_5 PF14501.1 gi|336252264|ref|YP_004595371.1| - 6.4e-05 22.5 0.0 0.00018 21.1 0.0 1.7 1 0 0 1 1 1 1 GHKL domain HATPase_c_2 PF13581.1 gi|336252264|ref|YP_004595371.1| - 8.2e-05 22.3 0.1 0.00021 21.0 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain DUF327 PF03885.8 gi|336252264|ref|YP_004595371.1| - 0.00039 20.2 2.0 0.066 13.0 0.2 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF327) PAS_8 PF13188.1 gi|336252264|ref|YP_004595371.1| - 0.0037 17.0 0.0 0.014 15.2 0.0 2.1 1 0 0 1 1 1 1 PAS domain HeLo PF14479.1 gi|336252264|ref|YP_004595371.1| - 0.026 14.2 3.0 0.56 9.9 0.1 2.6 3 0 0 3 3 2 0 Prion-inhibition and propagation HATPase_c_3 PF13589.1 gi|336252264|ref|YP_004595371.1| - 0.049 13.2 0.0 0.13 11.8 0.0 1.7 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IncA PF04156.9 gi|336252264|ref|YP_004595371.1| - 0.074 12.6 0.2 0.074 12.6 0.1 3.3 3 0 0 3 3 3 0 IncA protein Streptin-Immun PF11083.3 gi|336252264|ref|YP_004595371.1| - 0.085 12.8 6.5 0.55 10.2 1.5 2.5 2 0 0 2 2 2 0 Lantibiotic streptin immunity protein bZIP_1 PF00170.16 gi|336252264|ref|YP_004595371.1| - 0.11 12.4 15.9 0.38 10.7 0.4 3.2 3 1 1 4 4 4 0 bZIP transcription factor RteC PF09357.5 gi|336252264|ref|YP_004595371.1| - 0.26 11.0 1.5 11 5.7 0.2 2.2 2 0 0 2 2 2 0 RteC protein Spc7 PF08317.6 gi|336252264|ref|YP_004595371.1| - 0.7 8.4 7.4 0.38 9.3 1.4 2.2 2 0 0 2 2 2 0 Spc7 kinetochore protein CDC37_N PF03234.9 gi|336252264|ref|YP_004595371.1| - 1.4 9.2 6.1 14 5.9 0.4 2.8 3 0 0 3 3 3 0 Cdc37 N terminal kinase binding Syntaxin-6_N PF09177.6 gi|336252264|ref|YP_004595371.1| - 1.4 9.3 9.8 0.11 12.9 0.5 2.9 3 0 0 3 3 2 0 Syntaxin 6, N-terminal PilJ PF13675.1 gi|336252264|ref|YP_004595371.1| - 1.7 9.0 12.7 2 8.7 0.5 3.3 3 0 0 3 3 3 0 Type IV pili methyl-accepting chemotaxis transducer N-term V_ATPase_I PF01496.14 gi|336252264|ref|YP_004595371.1| - 1.7 6.4 4.6 1.6 6.5 0.6 2.0 2 0 0 2 2 2 0 V-type ATPase 116kDa subunit family CASP_C PF08172.7 gi|336252264|ref|YP_004595371.1| - 4.1 6.3 8.7 0.093 11.7 0.5 2.2 3 0 0 3 3 3 0 CASP C terminal DUF4200 PF13863.1 gi|336252264|ref|YP_004595371.1| - 4.5 7.2 16.9 0.23 11.3 3.3 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF4200) DUF904 PF06005.7 gi|336252264|ref|YP_004595371.1| - 5.8 7.2 11.9 2 8.7 3.7 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF904) PGBA_C PF15437.1 gi|336252264|ref|YP_004595371.1| - 6.2 7.0 14.3 14 5.8 4.2 2.5 2 0 0 2 2 2 0 Plasminogen-binding protein pgbA C-terminal Mnd1 PF03962.10 gi|336252264|ref|YP_004595371.1| - 8 6.0 8.4 2.3 7.8 0.9 2.8 3 0 0 3 3 3 0 Mnd1 family Ax_dynein_light PF10211.4 gi|336252264|ref|YP_004595371.1| - 9.5 6.0 13.2 0.93 9.3 2.0 2.6 3 0 0 3 3 2 0 Axonemal dynein light chain APOC4 PF15119.1 gi|336252265|ref|YP_004595372.1| - 0.069 13.1 0.1 0.072 13.0 0.0 1.1 1 0 0 1 1 1 0 Apolipoprotein C4 cobW PF02492.14 gi|336252267|ref|YP_004595374.1| - 5.2e-50 169.3 0.0 7e-50 168.9 0.0 1.2 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain CobW_C PF07683.9 gi|336252267|ref|YP_004595374.1| - 4.3e-29 100.0 0.0 8.4e-29 99.1 0.0 1.5 1 0 0 1 1 1 1 Cobalamin synthesis protein cobW C-terminal domain GTP_EFTU PF00009.22 gi|336252267|ref|YP_004595374.1| - 0.0012 18.2 0.0 0.38 10.1 0.0 2.2 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain T2SE PF00437.15 gi|336252267|ref|YP_004595374.1| - 0.0045 15.9 0.0 0.0074 15.2 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_16 PF13191.1 gi|336252267|ref|YP_004595374.1| - 0.0052 16.7 0.0 0.012 15.6 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain AAA_10 PF12846.2 gi|336252267|ref|YP_004595374.1| - 0.042 13.2 0.3 0.2 11.0 0.1 2.0 2 1 1 3 3 3 0 AAA-like domain MMR_HSR1 PF01926.18 gi|336252267|ref|YP_004595374.1| - 0.049 13.5 0.0 0.16 11.9 0.0 2.1 2 1 0 2 2 2 0 50S ribosome-binding GTPase AAA_33 PF13671.1 gi|336252267|ref|YP_004595374.1| - 0.061 13.1 0.0 0.12 12.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|336252267|ref|YP_004595374.1| - 0.064 12.9 0.0 0.095 12.3 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase AAA_19 PF13245.1 gi|336252267|ref|YP_004595374.1| - 0.068 12.9 0.1 0.17 11.6 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain AAA_22 PF13401.1 gi|336252267|ref|YP_004595374.1| - 0.088 12.9 0.0 0.22 11.6 0.0 1.7 1 0 0 1 1 1 0 AAA domain MobB PF03205.9 gi|336252267|ref|YP_004595374.1| - 0.097 12.3 0.1 0.33 10.6 0.0 1.9 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B Zeta_toxin PF06414.7 gi|336252267|ref|YP_004595374.1| - 0.16 11.0 0.0 0.31 10.1 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin HTH_5 PF01022.15 gi|336252268|ref|YP_004595375.1| - 3.6e-14 52.1 0.0 7.3e-14 51.1 0.0 1.5 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|336252268|ref|YP_004595375.1| - 1.1e-13 50.7 0.2 1.4e-13 50.4 0.1 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|336252268|ref|YP_004595375.1| - 2.2e-06 27.2 0.0 2.7e-06 26.9 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|336252268|ref|YP_004595375.1| - 2.2e-05 23.9 0.3 3.9e-05 23.1 0.2 1.5 1 1 0 1 1 1 1 IclR helix-turn-helix domain HTH_27 PF13463.1 gi|336252268|ref|YP_004595375.1| - 5.3e-05 23.4 0.1 6.8e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|336252268|ref|YP_004595375.1| - 6.9e-05 22.1 0.0 0.00028 20.1 0.0 1.8 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding PadR PF03551.9 gi|336252268|ref|YP_004595375.1| - 0.00024 20.8 0.2 0.00079 19.1 0.1 1.8 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family MarR PF01047.17 gi|336252268|ref|YP_004595375.1| - 0.00076 19.1 0.0 0.0011 18.6 0.0 1.2 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|336252268|ref|YP_004595375.1| - 0.00091 18.8 0.0 0.0012 18.4 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.1 gi|336252268|ref|YP_004595375.1| - 0.0012 18.5 0.0 0.0017 18.1 0.0 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix DUF2250 PF10007.4 gi|336252268|ref|YP_004595375.1| - 0.0068 16.2 0.3 0.035 14.0 0.4 1.8 1 1 1 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_11 PF08279.7 gi|336252268|ref|YP_004595375.1| - 0.023 14.3 0.0 0.032 13.8 0.0 1.3 1 0 0 1 1 1 0 HTH domain Rrf2 PF02082.15 gi|336252268|ref|YP_004595375.1| - 0.03 14.4 0.0 0.041 13.9 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator PaaX PF07848.7 gi|336252268|ref|YP_004595375.1| - 0.048 13.6 0.0 0.069 13.1 0.0 1.2 1 0 0 1 1 1 0 PaaX-like protein Fe_dep_repress PF01325.14 gi|336252268|ref|YP_004595375.1| - 0.085 12.8 0.0 0.13 12.1 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_34 PF13601.1 gi|336252268|ref|YP_004595375.1| - 0.085 12.8 0.0 0.1 12.6 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF2513 PF10711.4 gi|336252268|ref|YP_004595375.1| - 0.12 12.5 0.0 0.14 12.2 0.0 1.1 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) UCR_Fe-S_N PF10399.4 gi|336252270|ref|YP_004595377.1| - 0.92 8.7 3.8 4.2 6.6 0.2 2.9 3 0 0 3 3 3 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal PadR PF03551.9 gi|336252272|ref|YP_004595379.1| - 6e-17 61.1 1.0 9.2e-17 60.5 0.7 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|336252272|ref|YP_004595379.1| - 1.2e-07 31.9 0.1 1.1e-06 28.9 0.0 2.0 2 0 0 2 2 2 1 Winged helix DNA-binding domain DUF1495 PF07381.6 gi|336252272|ref|YP_004595379.1| - 0.0018 17.9 0.1 0.0026 17.3 0.1 1.4 1 1 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) HTH_45 PF14947.1 gi|336252272|ref|YP_004595379.1| - 0.01 15.6 0.1 0.017 14.9 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_34 PF13601.1 gi|336252272|ref|YP_004595379.1| - 0.14 12.2 0.0 0.2 11.7 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain Pyrophosphatase PF00719.14 gi|336252273|ref|YP_004595380.1| - 1.3e-55 187.0 1.8 1.5e-55 186.9 1.2 1.0 1 0 0 1 1 1 1 Inorganic pyrophosphatase TarH PF02203.10 gi|336252273|ref|YP_004595380.1| - 0.14 11.9 0.7 0.19 11.5 0.5 1.1 1 0 0 1 1 1 0 Tar ligand binding domain homologue CbiA PF01656.18 gi|336252274|ref|YP_004595381.1| - 5.5e-27 94.4 0.0 6.8e-27 94.1 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.10 gi|336252274|ref|YP_004595381.1| - 1.9e-09 36.9 0.4 3.7e-08 32.7 0.3 2.2 1 1 0 1 1 1 1 Anion-transporting ATPase AAA_31 PF13614.1 gi|336252274|ref|YP_004595381.1| - 3.1e-09 36.9 0.0 9.7e-09 35.3 0.0 1.8 1 1 0 1 1 1 1 AAA domain MipZ PF09140.6 gi|336252274|ref|YP_004595381.1| - 1.2e-08 34.3 0.3 0.00057 19.0 0.1 3.1 3 0 0 3 3 3 2 ATPase MipZ YhjQ PF06564.7 gi|336252274|ref|YP_004595381.1| - 1.7e-05 24.3 0.1 6e-05 22.5 0.1 1.8 1 1 0 1 1 1 1 YhjQ protein Fer4_NifH PF00142.13 gi|336252274|ref|YP_004595381.1| - 0.00023 20.4 0.0 0.00042 19.5 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_17 PF13207.1 gi|336252274|ref|YP_004595381.1| - 0.00096 19.9 0.1 0.0038 18.0 0.0 1.9 2 1 0 2 2 2 1 AAA domain ArgK PF03308.11 gi|336252274|ref|YP_004595381.1| - 0.0034 16.1 0.1 0.005 15.6 0.1 1.2 1 0 0 1 1 1 1 ArgK protein AAA_10 PF12846.2 gi|336252274|ref|YP_004595381.1| - 0.0053 16.2 0.0 0.0066 15.9 0.0 1.5 1 1 0 1 1 1 1 AAA-like domain SRP54 PF00448.17 gi|336252274|ref|YP_004595381.1| - 0.0055 16.1 0.1 0.0099 15.3 0.1 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain VirC1 PF07015.6 gi|336252274|ref|YP_004595381.1| - 0.012 14.7 0.0 0.018 14.1 0.0 1.2 1 0 0 1 1 1 0 VirC1 protein AAA_16 PF13191.1 gi|336252274|ref|YP_004595381.1| - 0.012 15.5 0.6 0.067 13.1 0.4 2.3 1 1 0 1 1 1 0 AAA ATPase domain MobB PF03205.9 gi|336252274|ref|YP_004595381.1| - 0.016 14.9 0.0 0.031 13.9 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Thymidylate_kin PF02223.12 gi|336252274|ref|YP_004595381.1| - 0.017 14.4 0.0 0.03 13.6 0.0 1.3 1 0 0 1 1 1 0 Thymidylate kinase Abhydrolase_5 PF12695.2 gi|336252274|ref|YP_004595381.1| - 0.022 14.4 0.1 0.053 13.2 0.0 1.7 2 0 0 2 2 2 0 Alpha/beta hydrolase family AAA_18 PF13238.1 gi|336252274|ref|YP_004595381.1| - 0.028 14.7 0.0 0.047 13.9 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|336252274|ref|YP_004595381.1| - 0.029 14.1 1.8 0.095 12.4 0.3 2.4 3 0 0 3 3 3 0 Part of AAA domain TrwB_AAD_bind PF10412.4 gi|336252274|ref|YP_004595381.1| - 0.053 12.1 0.0 0.082 11.5 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain Glyco_trans_4_4 PF13579.1 gi|336252274|ref|YP_004595381.1| - 0.069 13.2 7.2 0.3 11.2 5.0 2.3 1 1 0 1 1 1 0 Glycosyl transferase 4-like domain adh_short PF00106.20 gi|336252274|ref|YP_004595381.1| - 0.075 12.9 1.8 0.072 13.0 0.3 1.6 2 0 0 2 2 1 0 short chain dehydrogenase ATP_bind_1 PF03029.12 gi|336252274|ref|YP_004595381.1| - 0.13 11.8 0.0 0.38 10.2 0.0 1.7 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_22 PF13401.1 gi|336252274|ref|YP_004595381.1| - 0.13 12.3 0.0 0.33 11.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain Pheromone PF08015.6 gi|336252275|ref|YP_004595382.1| - 0.1 13.4 0.6 0.11 13.3 0.4 1.1 1 0 0 1 1 1 0 Fungal mating-type pheromone Phosphodiest PF01663.17 gi|336252276|ref|YP_004595383.1| - 2.5e-60 204.7 0.0 2.9e-60 204.5 0.0 1.0 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.18 gi|336252276|ref|YP_004595383.1| - 0.054 12.6 1.5 0.4 9.8 0.1 2.3 2 0 0 2 2 2 0 Sulfatase Metalloenzyme PF01676.13 gi|336252276|ref|YP_004595383.1| - 0.1 11.9 0.1 0.2 10.9 0.1 1.4 1 0 0 1 1 1 0 Metalloenzyme superfamily DUF1469 PF07332.6 gi|336252277|ref|YP_004595384.1| - 1.9 8.2 8.7 2.3 7.9 6.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) DUF1072 PF06380.6 gi|336252277|ref|YP_004595384.1| - 7.2 6.3 10.5 1.3 8.7 1.1 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF1072) DUF371 PF04027.8 gi|336252278|ref|YP_004595385.1| - 5.9e-49 165.0 0.1 6.7e-49 164.9 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF371) CpXC PF14353.1 gi|336252279|ref|YP_004595386.1| - 0.0002 21.2 1.6 0.00024 21.0 1.1 1.1 1 0 0 1 1 1 1 CpXC protein Zn_Tnp_IS1595 PF12760.2 gi|336252279|ref|YP_004595386.1| - 0.00042 20.0 3.6 0.026 14.3 0.1 2.1 2 0 0 2 2 2 1 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|336252279|ref|YP_004595386.1| - 0.0013 17.8 1.0 0.64 9.3 0.0 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|336252279|ref|YP_004595386.1| - 0.0028 17.3 2.1 0.96 9.1 0.1 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zf-C2HC_2 PF13913.1 gi|336252279|ref|YP_004595386.1| - 0.0051 16.4 6.4 0.13 11.9 0.6 2.2 2 0 0 2 2 2 2 zinc-finger of a C2HC-type Cys_rich_CPXG PF14255.1 gi|336252279|ref|YP_004595386.1| - 0.0055 16.5 0.7 0.062 13.1 0.0 2.1 2 0 0 2 2 2 1 Cysteine-rich CPXCG zf-RING_3 PF14369.1 gi|336252279|ref|YP_004595386.1| - 0.0083 16.1 1.5 0.42 10.6 0.1 2.2 2 0 0 2 2 2 1 zinc-finger zf-ISL3 PF14690.1 gi|336252279|ref|YP_004595386.1| - 0.01 15.8 6.5 0.11 12.5 0.3 2.2 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-IS66 PF13005.2 gi|336252279|ref|YP_004595386.1| - 0.022 14.7 3.1 1.5 8.8 0.5 2.2 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 zinc_ribbon_5 PF13719.1 gi|336252279|ref|YP_004595386.1| - 0.022 14.3 5.1 1.5 8.4 0.8 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-H2C2_2 PF13465.1 gi|336252279|ref|YP_004595386.1| - 0.025 14.8 3.0 3.2 8.1 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger double domain GFA PF04828.9 gi|336252279|ref|YP_004595386.1| - 0.034 14.1 3.6 0.098 12.6 0.1 2.0 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme Elf1 PF05129.8 gi|336252279|ref|YP_004595386.1| - 0.04 13.6 4.0 0.1 12.2 2.8 1.7 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like TF_Zn_Ribbon PF08271.7 gi|336252279|ref|YP_004595386.1| - 0.051 12.8 3.6 0.16 11.3 2.5 1.8 1 1 0 1 1 1 0 TFIIB zinc-binding zf-Di19 PF05605.7 gi|336252279|ref|YP_004595386.1| - 0.056 13.5 1.4 0.46 10.6 0.1 2.1 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding Cys_rich_KTR PF14205.1 gi|336252279|ref|YP_004595386.1| - 0.057 12.8 3.3 0.094 12.1 0.1 2.1 2 0 0 2 2 2 0 Cysteine-rich KTR zinc_ribbon_2 PF13240.1 gi|336252279|ref|YP_004595386.1| - 0.08 12.4 5.6 0.43 10.1 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|336252279|ref|YP_004595386.1| - 0.089 12.4 4.4 0.17 11.5 0.4 2.1 1 1 1 2 2 2 0 Putative transposase DNA-binding domain zf-BED PF02892.10 gi|336252279|ref|YP_004595386.1| - 0.13 12.0 1.5 8.2 6.2 0.1 2.2 2 0 0 2 2 2 0 BED zinc finger Nudix_N_2 PF14803.1 gi|336252279|ref|YP_004595386.1| - 0.16 11.7 7.1 2.1 8.1 0.5 2.2 2 0 0 2 2 2 0 Nudix N-terminal Lar_restr_allev PF14354.1 gi|336252279|ref|YP_004595386.1| - 0.17 12.1 2.7 0.24 11.7 1.9 1.3 1 1 0 1 1 1 0 Restriction alleviation protein Lar DZR PF12773.2 gi|336252279|ref|YP_004595386.1| - 0.2 11.5 4.7 0.65 9.8 3.3 1.9 1 1 0 1 1 1 0 Double zinc ribbon FYVE PF01363.16 gi|336252279|ref|YP_004595386.1| - 0.26 11.1 5.0 5.3 7.0 2.1 2.0 1 1 1 2 2 2 0 FYVE zinc finger zf-C2H2_4 PF13894.1 gi|336252279|ref|YP_004595386.1| - 0.27 11.6 2.8 11 6.6 0.0 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger zf-CSL PF05207.8 gi|336252279|ref|YP_004595386.1| - 0.29 10.6 1.7 7.5 6.1 0.1 2.1 2 0 0 2 2 2 0 CSL zinc finger Opy2 PF09463.5 gi|336252279|ref|YP_004595386.1| - 0.35 10.9 3.7 7.4 6.7 0.4 2.2 2 0 0 2 2 2 0 Opy2 protein Prok-RING_1 PF14446.1 gi|336252279|ref|YP_004595386.1| - 0.36 10.5 3.8 4.1 7.2 0.4 2.2 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 Zn_ribbon_recom PF13408.1 gi|336252279|ref|YP_004595386.1| - 0.42 10.9 3.4 1.6 9.0 2.4 1.8 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain TerY-C PF15616.1 gi|336252279|ref|YP_004595386.1| - 0.61 10.0 3.9 3.4 7.6 0.1 2.0 1 1 0 1 1 1 0 TerY-C metal binding domain ADK_lid PF05191.9 gi|336252279|ref|YP_004595386.1| - 0.69 9.6 3.8 6.9 6.4 0.3 2.4 2 0 0 2 2 2 0 Adenylate kinase, active site lid zf-C2H2 PF00096.21 gi|336252279|ref|YP_004595386.1| - 0.82 10.1 5.1 15 6.1 0.2 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type Cys_rich_CWC PF14375.1 gi|336252279|ref|YP_004595386.1| - 0.98 9.3 4.6 1.2 9.0 0.8 2.1 2 0 0 2 2 2 0 Cysteine-rich CWC zf-NADH-PPase PF09297.6 gi|336252279|ref|YP_004595386.1| - 1 8.9 5.1 9.7 5.8 0.2 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain DUF4428 PF14471.1 gi|336252279|ref|YP_004595386.1| - 1.1 9.0 4.3 1.6 8.5 0.1 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4428) Zn-ribbon_8 PF09723.5 gi|336252279|ref|YP_004595386.1| - 1.3 9.0 7.1 7.6 6.5 0.7 2.3 1 1 1 2 2 2 0 Zinc ribbon domain NOB1_Zn_bind PF08772.6 gi|336252279|ref|YP_004595386.1| - 2.7 7.8 6.0 2.2 8.1 0.2 2.1 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like HhH-GPD PF00730.20 gi|336252280|ref|YP_004595387.1| - 1.8e-17 63.5 0.0 3.6e-17 62.6 0.0 1.4 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein EndIII_4Fe-2S PF10576.4 gi|336252280|ref|YP_004595387.1| - 9.9e-05 22.3 7.3 0.00022 21.2 5.0 1.6 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH PF00633.18 gi|336252280|ref|YP_004595387.1| - 0.00016 21.1 0.0 0.00044 19.7 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif MEDS PF14417.1 gi|336252281|ref|YP_004595388.1| - 3.9e-37 127.1 2.1 5.1e-37 126.8 0.6 1.7 2 0 0 2 2 2 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain HATPase_c PF02518.21 gi|336252281|ref|YP_004595388.1| - 5.8e-30 103.2 0.0 2.3e-29 101.3 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|336252281|ref|YP_004595388.1| - 4.5e-09 36.1 0.0 4.5e-09 36.1 0.0 2.8 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain KaiC PF06745.8 gi|336252281|ref|YP_004595388.1| - 4.7e-08 32.4 0.1 9.1e-08 31.4 0.1 1.4 1 0 0 1 1 1 1 KaiC GAF_3 PF13492.1 gi|336252281|ref|YP_004595388.1| - 1.6e-07 31.4 0.0 3.7e-07 30.2 0.0 1.6 1 0 0 1 1 1 1 GAF domain HATPase_c_5 PF14501.1 gi|336252281|ref|YP_004595388.1| - 6.8e-07 28.9 0.0 6.4e-06 25.7 0.0 2.2 2 0 0 2 2 2 1 GHKL domain GAF_2 PF13185.1 gi|336252281|ref|YP_004595388.1| - 0.00037 20.9 1.0 0.0023 18.4 0.0 2.7 3 0 0 3 3 3 1 GAF domain GAF PF01590.21 gi|336252281|ref|YP_004595388.1| - 0.0055 16.8 0.0 0.013 15.6 0.0 1.7 1 0 0 1 1 1 1 GAF domain HEM4 PF02602.10 gi|336252281|ref|YP_004595388.1| - 0.0097 15.1 0.0 0.019 14.2 0.0 1.4 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD HATPase_c_3 PF13589.1 gi|336252281|ref|YP_004595388.1| - 0.014 15.0 0.0 0.036 13.7 0.0 1.7 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|336252281|ref|YP_004595388.1| - 0.017 14.8 0.1 0.039 13.7 0.1 1.6 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain AAA PF00004.24 gi|336252282|ref|YP_004595389.1| - 7.6e-11 42.3 0.0 3e-10 40.3 0.0 2.1 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.10 gi|336252282|ref|YP_004595389.1| - 2.3e-07 29.9 0.0 0.0032 16.2 0.0 2.2 2 0 0 2 2 2 2 Rad17 cell cycle checkpoint protein RuvB_N PF05496.7 gi|336252282|ref|YP_004595389.1| - 6.4e-07 28.6 0.0 1.5e-06 27.4 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_17 PF13207.1 gi|336252282|ref|YP_004595389.1| - 3.6e-06 27.8 0.8 3e-05 24.8 0.0 2.7 1 1 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|336252282|ref|YP_004595389.1| - 5.8e-05 23.2 0.0 0.0036 17.4 0.0 2.8 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|336252282|ref|YP_004595389.1| - 0.00012 22.1 0.3 0.023 14.6 0.0 2.8 1 1 0 2 2 2 1 AAA ATPase domain Zeta_toxin PF06414.7 gi|336252282|ref|YP_004595389.1| - 0.00058 19.0 0.0 0.0012 17.9 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin AAA_33 PF13671.1 gi|336252282|ref|YP_004595389.1| - 0.0016 18.2 0.2 0.0053 16.6 0.0 2.1 2 0 0 2 2 1 1 AAA domain AAA_28 PF13521.1 gi|336252282|ref|YP_004595389.1| - 0.0046 16.9 0.1 0.017 15.0 0.0 2.1 1 0 0 1 1 1 1 AAA domain Bac_DnaA PF00308.13 gi|336252282|ref|YP_004595389.1| - 0.0084 15.7 0.2 0.73 9.4 0.0 2.9 3 1 1 4 4 3 1 Bacterial dnaA protein DUF258 PF03193.11 gi|336252282|ref|YP_004595389.1| - 0.01 15.0 0.0 0.031 13.4 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function, DUF258 AAA_30 PF13604.1 gi|336252282|ref|YP_004595389.1| - 0.01 15.4 1.2 0.058 12.9 0.2 2.6 2 1 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|336252282|ref|YP_004595389.1| - 0.012 15.0 1.9 0.58 9.5 0.1 3.0 2 1 0 3 3 3 0 AAA domain AAA_5 PF07728.9 gi|336252282|ref|YP_004595389.1| - 0.017 14.8 0.0 0.053 13.2 0.0 1.8 2 0 0 2 2 1 0 AAA domain (dynein-related subfamily) AAA_18 PF13238.1 gi|336252282|ref|YP_004595389.1| - 0.018 15.3 1.8 0.049 13.9 0.0 2.7 3 1 1 4 4 2 0 AAA domain TIP49 PF06068.8 gi|336252282|ref|YP_004595389.1| - 0.021 13.5 0.0 4 6.0 0.0 2.2 2 0 0 2 2 2 0 TIP49 C-terminus IstB_IS21 PF01695.12 gi|336252282|ref|YP_004595389.1| - 0.022 14.1 0.0 0.041 13.3 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_19 PF13245.1 gi|336252282|ref|YP_004595389.1| - 0.022 14.4 0.0 0.1 12.3 0.0 2.2 2 0 0 2 2 1 0 Part of AAA domain DEAD PF00270.24 gi|336252282|ref|YP_004595389.1| - 0.034 13.6 0.0 10 5.5 0.0 2.7 3 0 0 3 3 3 0 DEAD/DEAH box helicase RNA_helicase PF00910.17 gi|336252282|ref|YP_004595389.1| - 0.048 13.8 0.0 0.11 12.6 0.0 1.7 1 0 0 1 1 1 0 RNA helicase DNA_pol3_delta PF06144.8 gi|336252282|ref|YP_004595389.1| - 0.057 12.9 0.0 0.098 12.1 0.0 1.4 1 0 0 1 1 1 0 DNA polymerase III, delta subunit IPT PF01745.11 gi|336252282|ref|YP_004595389.1| - 0.061 12.4 0.0 0.11 11.6 0.0 1.4 1 0 0 1 1 1 0 Isopentenyl transferase TraH_2 PF06871.6 gi|336252282|ref|YP_004595389.1| - 0.065 12.6 3.2 0.13 11.6 2.2 1.5 1 0 0 1 1 1 0 TraH_2 FtsK_SpoIIIE PF01580.13 gi|336252282|ref|YP_004595389.1| - 0.08 12.4 0.0 0.34 10.3 0.0 2.1 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_14 PF13173.1 gi|336252282|ref|YP_004595389.1| - 0.11 12.3 0.0 0.33 10.8 0.0 1.8 2 0 0 2 2 1 0 AAA domain zf-Di19 PF05605.7 gi|336252283|ref|YP_004595390.1| - 0.0022 18.0 0.3 0.0037 17.3 0.2 1.4 1 0 0 1 1 1 1 Drought induced 19 protein (Di19), zinc-binding zf-C2H2_4 PF13894.1 gi|336252283|ref|YP_004595390.1| - 0.014 15.7 2.1 0.016 15.5 0.4 1.8 2 0 0 2 2 2 0 C2H2-type zinc finger zf-C2H2 PF00096.21 gi|336252283|ref|YP_004595390.1| - 0.11 12.8 0.7 0.17 12.2 0.1 1.6 2 0 0 2 2 2 0 Zinc finger, C2H2 type GAGA PF09237.6 gi|336252283|ref|YP_004595390.1| - 0.36 10.4 2.1 0.47 10.0 0.4 1.8 2 0 0 2 2 2 0 GAGA factor Aminotran_1_2 PF00155.16 gi|336252284|ref|YP_004595391.1| - 9.9e-56 189.2 0.0 1.1e-55 189.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.15 gi|336252284|ref|YP_004595391.1| - 0.0027 16.0 0.0 0.005 15.1 0.0 1.4 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|336252284|ref|YP_004595391.1| - 0.021 13.8 4.0 0.058 12.4 2.7 1.9 1 1 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|336252284|ref|YP_004595391.1| - 0.041 12.6 0.0 0.063 12.0 0.0 1.2 1 0 0 1 1 1 0 Aminotransferase class-V OKR_DC_1 PF01276.15 gi|336252284|ref|YP_004595391.1| - 0.058 11.9 0.0 0.11 11.0 0.0 1.4 1 1 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain BATS PF06968.8 gi|336252285|ref|YP_004595392.1| - 4.5e-24 84.1 0.0 9.6e-24 83.0 0.0 1.6 1 0 0 1 1 1 1 Biotin and Thiamin Synthesis associated domain Radical_SAM PF04055.16 gi|336252285|ref|YP_004595392.1| - 3.2e-14 53.4 0.7 2.7e-12 47.1 0.1 2.3 2 0 0 2 2 2 2 Radical SAM superfamily CoA_binding PF02629.14 gi|336252287|ref|YP_004595394.1| - 4.4e-25 88.0 4.7 5.1e-25 87.8 0.5 2.5 2 1 0 2 2 2 1 CoA binding domain Ligase_CoA PF00549.14 gi|336252287|ref|YP_004595394.1| - 2.1e-15 56.6 0.5 4.6e-15 55.5 0.4 1.5 1 0 0 1 1 1 1 CoA-ligase Succ_CoA_lig PF13607.1 gi|336252287|ref|YP_004595394.1| - 4.5e-11 42.4 0.0 6.9e-11 41.9 0.0 1.3 1 0 0 1 1 1 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|336252287|ref|YP_004595394.1| - 6.7e-08 32.7 0.0 1.4e-06 28.4 0.0 2.2 2 0 0 2 2 2 1 CoA binding domain IlvN PF07991.7 gi|336252287|ref|YP_004595394.1| - 0.032 13.6 0.0 0.058 12.7 0.0 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain Bac_luciferase PF00296.15 gi|336252287|ref|YP_004595394.1| - 0.043 12.9 0.3 0.083 11.9 0.0 1.5 2 0 0 2 2 2 0 Luciferase-like monooxygenase ATP-grasp_2 PF08442.5 gi|336252288|ref|YP_004595395.1| - 4.1e-61 205.8 0.2 6.3e-61 205.2 0.1 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_5 PF13549.1 gi|336252288|ref|YP_004595395.1| - 3.6e-19 68.8 5.7 9.6e-18 64.2 3.5 2.8 2 1 0 2 2 2 1 ATP-grasp domain Ligase_CoA PF00549.14 gi|336252288|ref|YP_004595395.1| - 1.4e-13 50.6 0.3 3.9e-13 49.2 0.2 1.6 1 0 0 1 1 1 1 CoA-ligase CPSase_L_D2 PF02786.12 gi|336252288|ref|YP_004595395.1| - 3.6e-13 49.2 0.7 2.1e-10 40.2 0.3 2.2 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_4 PF13535.1 gi|336252288|ref|YP_004595395.1| - 8.8e-10 38.6 0.7 3.1e-09 36.8 0.1 2.1 3 0 0 3 3 3 1 ATP-grasp domain ATP-grasp PF02222.17 gi|336252288|ref|YP_004595395.1| - 1.9e-07 30.6 0.1 4.1e-07 29.5 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.14 gi|336252288|ref|YP_004595395.1| - 1.5e-06 27.8 0.2 3.4e-06 26.7 0.1 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Dala_Dala_lig_C PF07478.8 gi|336252288|ref|YP_004595395.1| - 0.021 14.2 1.2 0.068 12.5 0.1 2.4 2 1 0 2 2 2 0 D-ala D-ala ligase C-terminus Succ_CoA_lig PF13607.1 gi|336252288|ref|YP_004595395.1| - 0.07 12.7 0.0 0.13 11.8 0.0 1.4 1 0 0 1 1 1 0 Succinyl-CoA ligase like flavodoxin domain UbiA PF01040.13 gi|336252289|ref|YP_004595396.1| - 1.9e-28 99.4 20.6 2.5e-28 99.0 14.3 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF624 PF04854.9 gi|336252289|ref|YP_004595396.1| - 5.1 7.0 9.0 0.56 10.1 1.4 3.0 2 2 0 2 2 2 0 Protein of unknown function, DUF624 OrfB_Zn_ribbon PF07282.6 gi|336252290|ref|YP_004595397.1| - 0.0079 15.8 0.2 0.01 15.4 0.1 1.3 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.5 gi|336252290|ref|YP_004595397.1| - 0.019 14.8 0.6 0.24 11.3 0.0 2.2 2 0 0 2 2 2 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|336252290|ref|YP_004595397.1| - 0.043 13.6 0.2 0.077 12.8 0.1 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain DiS_P_DiS PF06750.8 gi|336252290|ref|YP_004595397.1| - 0.15 11.8 0.0 0.16 11.8 0.0 1.1 1 0 0 1 1 1 0 Bacterial Peptidase A24 N-terminal domain A2L_zn_ribbon PF08792.5 gi|336252290|ref|YP_004595397.1| - 0.41 10.1 2.4 3.4 7.2 0.1 2.3 2 0 0 2 2 2 0 A2L zinc ribbon domain DUF1272 PF06906.6 gi|336252290|ref|YP_004595397.1| - 0.97 9.3 3.3 0.57 10.0 0.2 1.9 1 1 0 2 2 2 0 Protein of unknown function (DUF1272) DUF4567 PF15131.1 gi|336252293|ref|YP_004595400.1| - 0.00063 19.8 0.0 0.00077 19.5 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4567) Aldo_ket_red PF00248.16 gi|336252294|ref|YP_004595401.1| - 1.4e-61 207.8 0.0 1.7e-61 207.5 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family FAD_binding_4 PF01565.18 gi|336252294|ref|YP_004595401.1| - 0.021 14.2 0.0 4.8 6.6 0.0 2.2 2 0 0 2 2 2 0 FAD binding domain Glyco_transf_5 PF08323.6 gi|336252295|ref|YP_004595402.1| - 0.027 13.9 0.1 0.038 13.4 0.1 1.2 1 0 0 1 1 1 0 Starch synthase catalytic domain SLAC1 PF03595.12 gi|336252296|ref|YP_004595403.1| - 0.061 11.9 5.4 0.071 11.7 3.7 1.0 1 0 0 1 1 1 0 Voltage-dependent anion channel DUF4118 PF13493.1 gi|336252296|ref|YP_004595403.1| - 0.21 11.7 3.2 0.25 11.5 2.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4118) Aconitase PF00330.15 gi|336252296|ref|YP_004595403.1| - 0.29 9.5 1.0 0.33 9.3 0.7 1.1 1 0 0 1 1 1 0 Aconitase family (aconitate hydratase) IncA PF04156.9 gi|336252296|ref|YP_004595403.1| - 1.4 8.4 8.9 1.6 8.3 6.2 1.0 1 0 0 1 1 1 0 IncA protein PAPS_reduct PF01507.14 gi|336252297|ref|YP_004595404.1| - 1.6e-18 67.1 0.0 1.4e-14 54.2 0.0 3.1 2 1 0 2 2 2 2 Phosphoadenosine phosphosulfate reductase family ATP_bind_4 PF01902.12 gi|336252297|ref|YP_004595404.1| - 0.012 15.0 0.0 0.031 13.6 0.0 1.7 2 0 0 2 2 2 0 ATP-binding region Epimerase_2 PF02350.14 gi|336252298|ref|YP_004595405.1| - 2.6e-104 348.7 0.0 3e-104 348.5 0.0 1.0 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase DUF354 PF04007.7 gi|336252298|ref|YP_004595405.1| - 0.032 13.1 0.0 0.038 12.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF354) DUF354 PF04007.7 gi|336252299|ref|YP_004595406.1| - 4.4e-10 38.9 0.0 1.3e-09 37.4 0.0 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF354) Glyco_trans_4_4 PF13579.1 gi|336252299|ref|YP_004595406.1| - 0.00021 21.4 1.0 0.0019 18.3 0.0 2.2 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_28 PF03033.15 gi|336252299|ref|YP_004595406.1| - 0.029 14.1 0.0 0.13 12.0 0.0 1.9 2 0 0 2 2 2 0 Glycosyltransferase family 28 N-terminal domain CytB6-F_Fe-S PF08802.5 gi|336252300|ref|YP_004595407.1| - 0.04 13.9 0.1 0.08 12.9 0.1 1.5 1 0 0 1 1 1 0 Cytochrome B6-F complex Fe-S subunit HEPN PF05168.9 gi|336252300|ref|YP_004595407.1| - 0.041 13.7 1.7 0.089 12.6 0.2 2.4 2 1 0 2 2 2 0 HEPN domain DUF357 PF04010.8 gi|336252300|ref|YP_004595407.1| - 0.057 13.1 0.1 0.16 11.6 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF357) TAT_signal PF10518.4 gi|336252300|ref|YP_004595407.1| - 0.11 12.6 5.1 0.31 11.1 3.6 1.9 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF1451 PF07295.6 gi|336252300|ref|YP_004595407.1| - 0.11 12.2 0.1 0.22 11.2 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) DUF3482 PF11981.3 gi|336252300|ref|YP_004595407.1| - 0.18 11.0 0.0 0.18 11.0 0.0 2.5 3 0 0 3 3 3 0 Domain of unknown function (DUF3482) Glutaredoxin PF00462.19 gi|336252302|ref|YP_004595409.1| - 2.2e-16 59.5 0.0 5e-16 58.4 0.0 1.6 2 0 0 2 2 2 1 Glutaredoxin GST_N_3 PF13417.1 gi|336252302|ref|YP_004595409.1| - 0.002 18.2 0.0 0.0031 17.6 0.0 1.2 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain ArsC PF03960.10 gi|336252302|ref|YP_004595409.1| - 0.034 14.2 0.0 0.086 12.9 0.0 1.6 2 0 0 2 2 2 0 ArsC family Methyltransf_11 PF08241.7 gi|336252303|ref|YP_004595410.1| - 9.5e-19 67.6 0.1 2e-18 66.6 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|336252303|ref|YP_004595410.1| - 4.8e-17 62.1 0.0 5.8e-17 61.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|336252303|ref|YP_004595410.1| - 1.1e-15 57.7 0.0 2.3e-15 56.8 0.0 1.5 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|336252303|ref|YP_004595410.1| - 8.1e-14 52.1 0.1 1.3e-13 51.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|336252303|ref|YP_004595410.1| - 2e-13 50.2 0.0 2.4e-13 49.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|336252303|ref|YP_004595410.1| - 5.1e-11 42.9 0.0 8.9e-11 42.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|336252303|ref|YP_004595410.1| - 1.8e-07 30.4 0.0 2.5e-07 30.0 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family CMAS PF02353.15 gi|336252303|ref|YP_004595410.1| - 1.1e-06 27.9 0.0 1.3e-06 27.6 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MetW PF07021.7 gi|336252303|ref|YP_004595410.1| - 6.5e-06 25.6 0.0 9e-06 25.1 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_26 PF13659.1 gi|336252303|ref|YP_004595410.1| - 1.6e-05 24.9 0.8 1.6e-05 24.9 0.6 1.9 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_8 PF05148.10 gi|336252303|ref|YP_004595410.1| - 0.0006 19.5 0.0 0.0012 18.4 0.0 1.6 1 1 0 1 1 1 1 Hypothetical methyltransferase CheR PF01739.13 gi|336252303|ref|YP_004595410.1| - 0.00084 18.6 0.0 0.0053 16.0 0.0 2.1 2 1 0 2 2 2 1 CheR methyltransferase, SAM binding domain MTS PF05175.9 gi|336252303|ref|YP_004595410.1| - 0.0021 17.4 0.0 0.003 16.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_9 PF08003.6 gi|336252303|ref|YP_004595410.1| - 0.042 12.5 0.0 0.048 12.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) Methyltransf_29 PF03141.11 gi|336252303|ref|YP_004595410.1| - 0.045 12.0 0.0 0.056 11.7 0.0 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase TPMT PF05724.6 gi|336252303|ref|YP_004595410.1| - 0.05 13.0 0.0 0.18 11.2 0.0 1.7 1 1 1 2 2 2 0 Thiopurine S-methyltransferase (TPMT) Methyltransf_4 PF02390.12 gi|336252303|ref|YP_004595410.1| - 0.16 10.9 0.0 1.9 7.5 0.0 2.0 2 0 0 2 2 2 0 Putative methyltransferase Yip1 PF04893.12 gi|336252304|ref|YP_004595411.1| - 0.042 13.3 3.1 0.051 13.0 2.1 1.1 1 0 0 1 1 1 0 Yip1 domain Endomucin PF07010.7 gi|336252304|ref|YP_004595411.1| - 0.15 11.3 0.8 0.2 10.9 0.5 1.1 1 0 0 1 1 1 0 Endomucin AstE_AspA PF04952.9 gi|336252305|ref|YP_004595412.1| - 2.8e-16 59.2 0.2 5.2e-16 58.3 0.2 1.4 1 1 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family Peptidase_M14 PF00246.19 gi|336252305|ref|YP_004595412.1| - 0.075 12.6 0.0 0.22 11.1 0.0 1.8 2 0 0 2 2 2 0 Zinc carboxypeptidase DUF309 PF03745.9 gi|336252306|ref|YP_004595413.1| - 1e-13 50.4 0.3 1.6e-13 49.8 0.2 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF309) zf-ribbon_3 PF13248.1 gi|336252307|ref|YP_004595414.1| - 9.9e-05 21.4 2.3 0.084 12.1 0.2 2.3 2 0 0 2 2 2 2 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|336252307|ref|YP_004595414.1| - 0.0002 20.9 1.0 0.00025 20.6 0.7 1.1 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zf-HIT PF04438.11 gi|336252307|ref|YP_004595414.1| - 0.0002 20.9 3.9 0.014 14.9 0.2 2.1 2 0 0 2 2 2 2 HIT zinc finger zinc_ribbon_4 PF13717.1 gi|336252307|ref|YP_004595414.1| - 0.00039 20.0 2.8 0.028 14.0 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|336252307|ref|YP_004595414.1| - 0.00042 19.5 4.2 0.00042 19.5 2.9 1.7 1 1 1 2 2 2 1 TFIIB zinc-binding zinc_ribbon_5 PF13719.1 gi|336252307|ref|YP_004595414.1| - 0.00043 19.7 2.7 0.035 13.7 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|336252307|ref|YP_004595414.1| - 0.0012 18.2 3.4 0.24 10.9 0.4 2.3 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|336252307|ref|YP_004595414.1| - 0.0026 17.5 0.7 0.004 16.9 0.5 1.3 1 0 0 1 1 1 1 Double zinc ribbon Rep_fac-A_C PF08646.5 gi|336252307|ref|YP_004595414.1| - 0.0033 17.1 0.1 0.0036 17.0 0.1 1.1 1 0 0 1 1 1 1 Replication factor-A C terminal domain FYDLN_acid PF09538.5 gi|336252307|ref|YP_004595414.1| - 0.0084 16.6 0.3 0.01 16.3 0.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (FYDLN_acid) RRN7 PF11781.3 gi|336252307|ref|YP_004595414.1| - 0.01 15.3 4.4 0.018 14.5 3.1 1.4 1 0 0 1 1 1 0 RNA polymerase I-specific transcription initiation factor Rrn7 zinc-ribbons_6 PF07191.7 gi|336252307|ref|YP_004595414.1| - 0.011 15.5 0.2 0.012 15.3 0.1 1.2 1 0 0 1 1 1 0 zinc-ribbons Zn-ribbon_8 PF09723.5 gi|336252307|ref|YP_004595414.1| - 0.023 14.6 2.1 3.2 7.7 0.0 2.2 2 0 0 2 2 2 0 Zinc ribbon domain DUF1610 PF07754.6 gi|336252307|ref|YP_004595414.1| - 0.026 14.6 10.1 0.61 10.2 1.6 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Prok-RING_1 PF14446.1 gi|336252307|ref|YP_004595414.1| - 0.03 14.0 0.7 0.044 13.5 0.5 1.3 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 zf-NADH-PPase PF09297.6 gi|336252307|ref|YP_004595414.1| - 0.036 13.5 4.1 0.81 9.2 0.3 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Rubredoxin PF00301.15 gi|336252307|ref|YP_004595414.1| - 0.04 13.7 4.3 0.26 11.1 0.0 2.4 1 1 1 2 2 2 0 Rubredoxin C1_1 PF00130.17 gi|336252307|ref|YP_004595414.1| - 0.044 13.5 0.3 0.056 13.1 0.2 1.1 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DUF35_N PF12172.3 gi|336252307|ref|YP_004595414.1| - 0.05 13.5 2.7 1.6 8.7 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Zn_Tnp_IS1595 PF12760.2 gi|336252307|ref|YP_004595414.1| - 0.055 13.2 4.9 0.15 11.8 3.4 1.7 1 1 0 1 1 1 0 Transposase zinc-ribbon domain HypA PF01155.14 gi|336252307|ref|YP_004595414.1| - 0.058 13.0 0.2 0.06 13.0 0.1 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family ADK_lid PF05191.9 gi|336252307|ref|YP_004595414.1| - 0.089 12.4 0.4 3.2 7.4 0.0 2.2 2 0 0 2 2 2 0 Adenylate kinase, active site lid zf-IS66 PF13005.2 gi|336252307|ref|YP_004595414.1| - 0.092 12.7 6.0 0.37 10.8 0.2 2.2 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 zf-UDP PF14569.1 gi|336252307|ref|YP_004595414.1| - 0.098 12.4 0.5 0.11 12.2 0.3 1.3 1 0 0 1 1 1 0 Zinc-binding RING-finger NESP55 PF06390.7 gi|336252307|ref|YP_004595414.1| - 0.11 11.8 2.4 0.11 11.8 1.6 1.1 1 0 0 1 1 1 0 Neuroendocrine-specific golgi protein P55 (NESP55) Auto_anti-p27 PF06677.7 gi|336252307|ref|YP_004595414.1| - 0.12 12.1 0.8 0.16 11.7 0.6 1.1 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-RING_4 PF14570.1 gi|336252307|ref|YP_004595414.1| - 0.19 11.3 9.0 5.6 6.6 6.0 2.1 1 1 1 2 2 2 0 RING/Ubox like zinc-binding domain zf-dskA_traR PF01258.12 gi|336252307|ref|YP_004595414.1| - 0.19 11.4 5.8 0.44 10.3 4.0 1.6 1 1 0 1 1 1 0 Prokaryotic dksA/traR C4-type zinc finger GFA PF04828.9 gi|336252307|ref|YP_004595414.1| - 0.21 11.5 1.2 4.3 7.3 0.1 2.1 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme UPF0547 PF10571.4 gi|336252307|ref|YP_004595414.1| - 0.25 11.0 7.1 2.2 8.0 0.3 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Sgf11 PF08209.6 gi|336252307|ref|YP_004595414.1| - 0.29 10.4 4.3 3.1 7.1 0.2 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zf-C2H2 PF00096.21 gi|336252307|ref|YP_004595414.1| - 0.35 11.2 2.2 16 6.1 0.1 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-ISL3 PF14690.1 gi|336252307|ref|YP_004595414.1| - 0.41 10.7 7.1 1.3 9.1 0.5 2.1 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF2296 PF10058.4 gi|336252307|ref|YP_004595414.1| - 0.87 9.3 4.7 2.7 7.8 0.2 2.2 1 1 1 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) Ogr_Delta PF04606.7 gi|336252307|ref|YP_004595414.1| - 1.3 8.7 4.6 4 7.1 0.2 2.1 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-TFIIB PF13453.1 gi|336252307|ref|YP_004595414.1| - 1.5 8.1 4.2 7 5.9 2.9 1.9 1 1 1 2 2 2 0 Transcription factor zinc-finger FANCL_C PF11793.3 gi|336252307|ref|YP_004595414.1| - 2.1 8.3 4.1 2.3 8.2 0.1 2.1 1 1 1 2 2 2 0 FANCL C-terminal domain DUF1272 PF06906.6 gi|336252307|ref|YP_004595414.1| - 2.4 8.0 5.5 6.5 6.6 0.3 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1272) Cys_rich_CPXG PF14255.1 gi|336252307|ref|YP_004595414.1| - 2.6 7.9 4.9 5.8 6.8 0.2 2.3 2 1 0 2 2 2 0 Cysteine-rich CPXCG zf-H2C2_2 PF13465.1 gi|336252307|ref|YP_004595414.1| - 4.9 7.6 6.2 3.8e+02 1.6 4.3 2.3 1 1 0 1 1 1 0 Zinc-finger double domain DUF329 PF03884.9 gi|336252307|ref|YP_004595414.1| - 9.7 5.8 6.6 15 5.2 0.2 2.4 2 1 1 3 3 2 0 Domain of unknown function (DUF329) VKG_Carbox PF05090.9 gi|336252308|ref|YP_004595415.1| - 1.6e-06 27.2 0.0 2.4e-06 26.6 0.0 1.3 1 0 0 1 1 1 1 Vitamin K-dependent gamma-carboxylase O-antigen_lig PF13425.1 gi|336252308|ref|YP_004595415.1| - 1.7 8.6 13.8 0.13 12.2 1.4 2.8 3 0 0 3 3 3 0 O-antigen ligase like membrane protein Inositol_P PF00459.20 gi|336252309|ref|YP_004595416.1| - 7.5e-59 199.2 1.2 8.7e-59 199.0 0.8 1.0 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.15 gi|336252309|ref|YP_004595416.1| - 0.041 12.7 0.1 0.057 12.2 0.1 1.2 1 0 0 1 1 1 0 Fructose-1-6-bisphosphatase DUF63 PF01889.12 gi|336252310|ref|YP_004595417.1| - 2.9e-32 112.8 10.6 3.9e-30 105.8 5.7 3.1 2 1 0 2 2 2 1 Membrane protein of unknown function DUF63 AA_permease_2 PF13520.1 gi|336252311|ref|YP_004595418.1| - 5.2e-48 163.6 43.8 6.6e-48 163.2 30.4 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|336252311|ref|YP_004595418.1| - 3.2e-44 151.0 42.0 4.2e-44 150.6 29.1 1.1 1 0 0 1 1 1 1 Amino acid permease Usp PF00582.21 gi|336252311|ref|YP_004595418.1| - 9.1e-22 77.7 14.9 5.3e-11 42.8 2.0 3.1 3 1 0 3 3 3 2 Universal stress protein family AA_permease_C PF13906.1 gi|336252311|ref|YP_004595418.1| - 1.4 8.8 7.8 0.73 9.7 2.8 2.6 2 0 0 2 2 2 0 C-terminus of AA_permease AA_permease_2 PF13520.1 gi|336252312|ref|YP_004595419.1| - 5.2e-47 160.3 44.4 6.8e-47 159.9 30.8 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|336252312|ref|YP_004595419.1| - 3.1e-38 131.3 41.5 4.1e-38 130.9 28.7 1.1 1 0 0 1 1 1 1 Amino acid permease Usp PF00582.21 gi|336252312|ref|YP_004595419.1| - 1.9e-25 89.6 9.3 6e-14 52.4 2.8 2.5 2 0 0 2 2 2 2 Universal stress protein family AA_permease_C PF13906.1 gi|336252312|ref|YP_004595419.1| - 0.0039 17.0 3.5 0.0039 17.0 2.4 2.5 3 0 0 3 3 3 1 C-terminus of AA_permease PTPS_related PF10131.4 gi|336252312|ref|YP_004595419.1| - 0.14 10.2 7.7 0.38 8.8 0.9 2.2 2 0 0 2 2 2 0 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein 2TM PF13239.1 gi|336252312|ref|YP_004595419.1| - 2.6 8.1 8.2 0.87 9.6 1.0 2.9 2 0 0 2 2 2 0 2TM domain PHD_3 PF13922.1 gi|336252314|ref|YP_004595421.1| - 0.097 12.9 0.2 9.7 6.5 0.0 2.0 2 0 0 2 2 2 0 PHD domain of transcriptional enhancer, Asx RRN7 PF11781.3 gi|336252314|ref|YP_004595421.1| - 0.14 11.6 0.1 0.14 11.6 0.1 1.5 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 Usp PF00582.21 gi|336252315|ref|YP_004595422.1| - 3e-23 82.5 0.3 3e-23 82.5 0.2 1.5 2 0 0 2 2 2 1 Universal stress protein family HTH_10 PF04967.7 gi|336252316|ref|YP_004595423.1| - 1.3e-17 63.1 0.1 2.2e-17 62.3 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.11 gi|336252316|ref|YP_004595423.1| - 0.00025 20.3 0.2 0.00061 19.0 0.1 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 MarR_2 PF12802.2 gi|336252316|ref|YP_004595423.1| - 0.00031 20.3 0.9 0.0026 17.3 0.3 2.3 2 0 0 2 2 2 1 MarR family HTH_AsnC-type PF13404.1 gi|336252316|ref|YP_004595423.1| - 0.01 15.3 0.2 0.021 14.3 0.2 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|336252316|ref|YP_004595423.1| - 0.029 13.7 0.1 0.054 12.9 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Sigma70_r4_2 PF08281.7 gi|336252316|ref|YP_004595423.1| - 0.067 12.6 0.3 5.6 6.5 0.0 2.3 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_AraC PF00165.18 gi|336252316|ref|YP_004595423.1| - 0.12 12.2 0.0 0.23 11.3 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix proteins, AraC family UPF0122 PF04297.9 gi|336252316|ref|YP_004595423.1| - 0.14 12.1 0.0 0.26 11.3 0.0 1.3 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like Nop PF01798.13 gi|336252317|ref|YP_004595424.1| - 4.3e-43 146.1 0.1 6.4e-43 145.6 0.1 1.2 1 0 0 1 1 1 1 Putative snoRNA binding domain HutP PF09021.6 gi|336252317|ref|YP_004595424.1| - 0.11 12.7 0.3 0.35 11.0 0.0 1.8 2 0 0 2 2 2 0 HutP Fibrillarin PF01269.12 gi|336252318|ref|YP_004595425.1| - 1.5e-52 177.8 0.0 1.8e-52 177.5 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin PAS_7 PF12860.2 gi|336252319|ref|YP_004595426.1| - 0.0089 16.0 0.1 0.016 15.1 0.1 1.4 1 0 0 1 1 1 1 PAS fold OAD_gamma PF04277.8 gi|336252319|ref|YP_004595426.1| - 0.082 13.2 0.7 0.2 12.0 0.5 1.7 1 1 0 1 1 1 0 Oxaloacetate decarboxylase, gamma chain GCS2 PF04107.8 gi|336252321|ref|YP_004595428.1| - 3.7e-79 265.8 0.4 4.4e-79 265.5 0.2 1.0 1 0 0 1 1 1 1 Glutamate-cysteine ligase family 2(GCS2) Amidoligase_2 PF12224.3 gi|336252321|ref|YP_004595428.1| - 0.005 16.4 0.3 1.8 8.0 0.0 2.6 3 0 0 3 3 3 2 Putative amidoligase enzyme GCS PF03074.11 gi|336252321|ref|YP_004595428.1| - 0.017 14.2 0.0 0.025 13.6 0.0 1.2 1 0 0 1 1 1 0 Glutamate-cysteine ligase Lipase_GDSL_2 PF13472.1 gi|336252322|ref|YP_004595429.1| - 0.021 14.9 0.2 0.061 13.4 0.1 2.0 1 1 0 1 1 1 0 GDSL-like Lipase/Acylhydrolase family Amino_oxidase PF01593.19 gi|336252323|ref|YP_004595430.1| - 1e-15 57.7 2.3 5.5e-13 48.7 0.5 2.8 2 1 0 2 2 2 2 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.1 gi|336252323|ref|YP_004595430.1| - 4.8e-15 55.3 0.8 9.7e-15 54.3 0.3 1.8 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|336252323|ref|YP_004595430.1| - 1.3e-11 44.0 7.6 4.4e-10 39.0 0.1 2.7 3 1 0 3 3 3 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|336252323|ref|YP_004595430.1| - 1.4e-10 40.6 3.5 5.1e-08 32.1 1.5 2.2 2 0 0 2 2 2 2 FAD binding domain Pyr_redox_2 PF07992.9 gi|336252323|ref|YP_004595430.1| - 3.8e-08 33.4 0.0 1e-06 28.7 0.1 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|336252323|ref|YP_004595430.1| - 6.1e-07 28.2 0.5 1.5e-05 23.6 0.5 2.1 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox PF00070.22 gi|336252323|ref|YP_004595430.1| - 7.2e-07 29.5 0.4 2e-05 24.9 0.7 2.7 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|336252323|ref|YP_004595430.1| - 8.2e-07 28.3 0.8 1.4e-06 27.6 0.6 1.3 1 0 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.2 gi|336252323|ref|YP_004595430.1| - 6e-06 25.5 1.3 8.5e-06 25.0 0.4 1.6 2 0 0 2 2 2 1 FAD dependent oxidoreductase Thi4 PF01946.12 gi|336252323|ref|YP_004595430.1| - 3.1e-05 23.2 0.6 4.6e-05 22.6 0.4 1.2 1 0 0 1 1 1 1 Thi4 family Pyr_redox_3 PF13738.1 gi|336252323|ref|YP_004595430.1| - 0.0017 18.4 1.1 0.0033 17.5 0.8 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|336252323|ref|YP_004595430.1| - 0.0047 15.8 2.1 0.0055 15.6 0.8 1.5 2 0 0 2 2 2 1 Glucose inhibited division protein A Lycopene_cycl PF05834.7 gi|336252323|ref|YP_004595430.1| - 0.014 14.3 0.9 0.028 13.3 0.4 1.6 2 0 0 2 2 2 0 Lycopene cyclase protein Trp_halogenase PF04820.9 gi|336252323|ref|YP_004595430.1| - 0.032 12.8 0.5 0.05 12.2 0.4 1.3 1 0 0 1 1 1 0 Tryptophan halogenase NAD_binding_9 PF13454.1 gi|336252323|ref|YP_004595430.1| - 0.05 13.3 2.1 0.23 11.2 0.4 2.5 3 0 0 3 3 3 0 FAD-NAD(P)-binding 3HCDH_N PF02737.13 gi|336252323|ref|YP_004595430.1| - 0.15 11.7 0.5 0.33 10.5 0.4 1.6 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Usp PF00582.21 gi|336252324|ref|YP_004595431.1| - 4.2e-34 117.7 0.9 4.6e-34 117.5 0.6 1.0 1 0 0 1 1 1 1 Universal stress protein family VWA_3 PF13768.1 gi|336252324|ref|YP_004595431.1| - 0.074 12.7 0.0 0.099 12.3 0.0 1.3 1 1 0 1 1 1 0 von Willebrand factor type A domain TauE PF01925.14 gi|336252325|ref|YP_004595432.1| - 6.1e-29 101.1 43.0 7.6e-29 100.8 29.8 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DUF4405 PF14358.1 gi|336252325|ref|YP_004595432.1| - 0.23 11.6 7.1 19 5.5 3.6 2.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4405) DUF3464 PF11947.3 gi|336252325|ref|YP_004595432.1| - 1.4 8.3 7.1 3.9 6.9 0.6 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3464) UPF0118 PF01594.11 gi|336252326|ref|YP_004595433.1| - 2e-36 125.6 28.0 2.5e-36 125.3 19.4 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF20 Nramp PF01566.13 gi|336252327|ref|YP_004595434.1| - 4.6e-34 117.7 27.0 4.6e-34 117.7 18.7 1.4 1 1 0 1 1 1 1 Natural resistance-associated macrophage protein DNA_gyraseB PF00204.20 gi|336252328|ref|YP_004595435.1| - 5.1e-61 204.8 1.2 8.4e-61 204.1 0.6 1.6 2 0 0 2 2 2 1 DNA gyrase B DNA_gyraseB_C PF00986.16 gi|336252328|ref|YP_004595435.1| - 1.6e-29 101.4 0.0 3.4e-29 100.3 0.0 1.5 1 0 0 1 1 1 1 DNA gyrase B subunit, carboxyl terminus Toprim PF01751.17 gi|336252328|ref|YP_004595435.1| - 2.2e-25 88.5 0.0 7.3e-25 86.8 0.0 2.0 1 0 0 1 1 1 1 Toprim domain HATPase_c PF02518.21 gi|336252328|ref|YP_004595435.1| - 1.2e-19 70.0 0.1 2.5e-19 69.0 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|336252328|ref|YP_004595435.1| - 0.00017 21.2 0.1 0.00035 20.2 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DNA_topoisoIV PF00521.15 gi|336252329|ref|YP_004595436.1| - 1.2e-154 515.2 0.0 1.5e-154 514.9 0.0 1.1 1 0 0 1 1 1 1 DNA gyrase/topoisomerase IV, subunit A DNA_gyraseA_C PF03989.8 gi|336252329|ref|YP_004595436.1| - 3.5e-63 208.6 15.4 9.1e-14 50.5 0.1 6.4 6 0 0 6 6 6 6 DNA gyrase C-terminal domain, beta-propeller IKI3 PF04762.7 gi|336252329|ref|YP_004595436.1| - 0.0048 14.7 0.2 0.023 12.5 0.0 2.0 1 1 2 3 3 3 1 IKI3 family DUF745 PF05335.8 gi|336252329|ref|YP_004595436.1| - 0.048 13.1 3.5 0.085 12.3 2.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF745) HrcA_DNA-bdg PF03444.10 gi|336252330|ref|YP_004595437.1| - 6e-37 124.9 0.1 8.5e-37 124.4 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Rrf2 PF02082.15 gi|336252330|ref|YP_004595437.1| - 6.5e-09 35.7 0.0 1.1e-08 35.0 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator HTH_11 PF08279.7 gi|336252330|ref|YP_004595437.1| - 1.7e-06 27.5 0.0 2.7e-06 26.9 0.0 1.3 1 0 0 1 1 1 1 HTH domain Put_DNA-bind_N PF06971.8 gi|336252330|ref|YP_004595437.1| - 0.011 15.4 0.0 0.018 14.7 0.0 1.4 1 0 0 1 1 1 0 Putative DNA-binding protein N-terminus TrmB PF01978.14 gi|336252330|ref|YP_004595437.1| - 0.016 14.9 0.0 0.029 14.0 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|336252330|ref|YP_004595437.1| - 0.019 14.7 0.0 0.036 13.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.1 gi|336252330|ref|YP_004595437.1| - 0.023 14.0 0.3 0.049 13.0 0.2 1.6 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding Phage_terminase PF10668.4 gi|336252330|ref|YP_004595437.1| - 0.031 14.0 0.0 0.057 13.2 0.0 1.3 1 0 0 1 1 1 0 Phage terminase small subunit HTH_27 PF13463.1 gi|336252330|ref|YP_004595437.1| - 0.057 13.7 0.0 0.09 13.1 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_38 PF13936.1 gi|336252330|ref|YP_004595437.1| - 0.11 12.0 0.0 0.37 10.3 0.0 2.0 2 1 0 2 2 2 0 Helix-turn-helix domain Fe_dep_repr_C PF02742.10 gi|336252331|ref|YP_004595438.1| - 5.1e-29 99.7 0.9 1.1e-28 98.6 0.6 1.6 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.14 gi|336252331|ref|YP_004595438.1| - 7e-20 70.7 0.5 7e-20 70.7 0.3 1.7 2 0 0 2 2 1 1 Iron dependent repressor, N-terminal DNA binding domain FeoA PF04023.9 gi|336252331|ref|YP_004595438.1| - 8.5e-13 48.0 0.5 2.7e-12 46.4 0.1 2.0 2 0 0 2 2 2 1 FeoA domain MarR PF01047.17 gi|336252331|ref|YP_004595438.1| - 3.3e-09 36.3 0.1 7e-09 35.2 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|336252331|ref|YP_004595438.1| - 4.8e-09 35.7 0.1 2.1e-08 33.7 0.0 2.0 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.1 gi|336252331|ref|YP_004595438.1| - 2.3e-07 30.0 0.0 5.1e-07 28.9 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|336252331|ref|YP_004595438.1| - 1.4e-06 28.5 1.5 2.8e-06 27.5 0.3 2.1 3 0 0 3 3 1 1 Winged helix DNA-binding domain DUF2250 PF10007.4 gi|336252331|ref|YP_004595438.1| - 7.7e-06 25.7 0.2 1.6e-05 24.7 0.1 1.5 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) TrmB PF01978.14 gi|336252331|ref|YP_004595438.1| - 1.6e-05 24.5 0.0 3.7e-05 23.3 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.15 gi|336252331|ref|YP_004595438.1| - 3.4e-05 23.8 0.1 8.6e-05 22.5 0.0 1.7 1 0 0 1 1 1 1 Transcriptional regulator HTH_20 PF12840.2 gi|336252331|ref|YP_004595438.1| - 4.9e-05 23.0 0.0 0.00056 19.6 0.0 2.6 3 1 0 3 3 2 1 Helix-turn-helix domain GntR PF00392.16 gi|336252331|ref|YP_004595438.1| - 6e-05 22.3 0.0 0.00016 21.0 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_IclR PF09339.5 gi|336252331|ref|YP_004595438.1| - 6.7e-05 22.3 0.0 0.00028 20.3 0.0 2.1 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|336252331|ref|YP_004595438.1| - 0.00019 21.1 0.0 0.00036 20.2 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_5 PF01022.15 gi|336252331|ref|YP_004595438.1| - 0.00063 19.3 0.0 0.0021 17.6 0.0 1.9 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family FeoC PF09012.5 gi|336252331|ref|YP_004595438.1| - 0.0011 18.6 0.0 0.0022 17.6 0.0 1.5 1 0 0 1 1 1 1 FeoC like transcriptional regulator HTH_11 PF08279.7 gi|336252331|ref|YP_004595438.1| - 0.0012 18.4 0.1 0.002 17.7 0.1 1.4 1 0 0 1 1 1 1 HTH domain HTH_45 PF14947.1 gi|336252331|ref|YP_004595438.1| - 0.0012 18.6 0.0 0.0018 18.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix HrcA_DNA-bdg PF03444.10 gi|336252331|ref|YP_004595438.1| - 0.0016 17.8 0.0 0.0027 17.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Penicillinase_R PF03965.11 gi|336252331|ref|YP_004595438.1| - 0.003 17.6 0.1 0.0062 16.6 0.1 1.6 1 0 0 1 1 1 1 Penicillinase repressor HTH_23 PF13384.1 gi|336252331|ref|YP_004595438.1| - 0.0034 16.9 0.0 0.015 14.9 0.0 2.2 2 1 1 3 3 2 1 Homeodomain-like domain HTH_1 PF00126.22 gi|336252331|ref|YP_004595438.1| - 0.0036 17.0 0.0 0.011 15.4 0.0 1.8 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_12 PF08461.5 gi|336252331|ref|YP_004595438.1| - 0.0056 16.3 0.2 0.016 14.9 0.1 1.8 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain Topoisom_bac PF01131.15 gi|336252331|ref|YP_004595438.1| - 0.0073 15.1 0.1 0.01 14.7 0.1 1.2 1 0 0 1 1 1 1 DNA topoisomerase HxlR PF01638.12 gi|336252331|ref|YP_004595438.1| - 0.0085 15.7 0.1 0.02 14.5 0.1 1.7 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_13 PF11972.3 gi|336252331|ref|YP_004595438.1| - 0.028 14.2 0.0 0.058 13.2 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain Put_DNA-bind_N PF06971.8 gi|336252331|ref|YP_004595438.1| - 0.036 13.8 0.1 0.11 12.2 0.0 1.8 1 0 0 1 1 1 0 Putative DNA-binding protein N-terminus HTH_29 PF13551.1 gi|336252331|ref|YP_004595438.1| - 0.04 14.0 0.1 0.11 12.6 0.0 1.8 1 1 0 1 1 1 0 Winged helix-turn helix DUF4423 PF14394.1 gi|336252331|ref|YP_004595438.1| - 0.042 13.3 0.0 0.064 12.8 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) RPA_C PF08784.6 gi|336252331|ref|YP_004595438.1| - 0.049 14.0 0.0 0.17 12.3 0.0 1.8 2 0 0 2 2 2 0 Replication protein A C terminal HTH_34 PF13601.1 gi|336252331|ref|YP_004595438.1| - 0.06 13.3 0.0 0.13 12.3 0.0 1.7 1 1 0 1 1 1 0 Winged helix DNA-binding domain LexA_DNA_bind PF01726.11 gi|336252331|ref|YP_004595438.1| - 0.064 12.8 0.0 0.35 10.4 0.0 2.1 2 0 0 2 2 2 0 LexA DNA binding domain HTH_Tnp_ISL3 PF13542.1 gi|336252331|ref|YP_004595438.1| - 0.073 12.2 0.1 64 2.8 0.0 3.5 3 0 0 3 3 3 0 Helix-turn-helix domain of transposase family ISL3 HTH_AsnC-type PF13404.1 gi|336252331|ref|YP_004595438.1| - 0.074 12.6 0.1 0.2 11.2 0.0 1.8 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain CtsR PF05848.6 gi|336252331|ref|YP_004595438.1| - 0.13 12.1 0.0 0.25 11.3 0.0 1.5 1 0 0 1 1 1 0 Firmicute transcriptional repressor of class III stress genes (CtsR) Arginase PF00491.16 gi|336252332|ref|YP_004595439.1| - 2.8e-77 259.7 3.9 3.4e-77 259.4 2.7 1.0 1 0 0 1 1 1 1 Arginase family Pyr_redox_2 PF07992.9 gi|336252333|ref|YP_004595440.1| - 2.5e-17 63.4 0.2 4e-17 62.7 0.1 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|336252333|ref|YP_004595440.1| - 5.5e-10 39.5 0.5 1.8e-08 34.6 0.0 2.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|336252333|ref|YP_004595440.1| - 5e-07 29.9 2.3 0.0017 18.4 0.0 3.5 1 1 3 4 4 4 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|336252333|ref|YP_004595440.1| - 3.9e-05 23.4 1.4 0.2 11.4 0.0 3.2 3 0 0 3 3 3 2 FAD-NAD(P)-binding Spore_SspJ PF09575.5 gi|336252333|ref|YP_004595440.1| - 0.55 10.4 4.5 0.81 9.9 0.1 3.0 3 0 0 3 3 3 0 Small spore protein J (Spore_SspJ) Hexapep PF00132.19 gi|336252334|ref|YP_004595441.1| - 8.9e-10 37.6 1.8 1.2e-08 34.0 0.2 3.0 3 0 0 3 3 3 1 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|336252334|ref|YP_004595441.1| - 7e-08 31.9 3.8 1e-06 28.1 0.3 2.8 2 1 0 2 2 2 1 Hexapeptide repeat of succinyl-transferase TraW_N PF12477.3 gi|336252335|ref|YP_004595442.1| - 0.017 15.0 0.3 0.032 14.1 0.2 1.5 1 0 0 1 1 1 0 Sex factor F TraW protein N terminal Lysis_S PF04971.7 gi|336252336|ref|YP_004595443.1| - 0.28 10.9 1.5 0.44 10.2 0.9 1.5 1 1 0 1 1 1 0 Lysis protein S SdpI PF13630.1 gi|336252336|ref|YP_004595443.1| - 4.7 6.9 6.0 6.3 6.5 4.2 1.3 1 0 0 1 1 1 0 SdpI/YhfL protein family zf-CSL PF05207.8 gi|336252337|ref|YP_004595444.1| - 0.024 14.1 1.1 3 7.4 0.0 2.1 2 0 0 2 2 2 0 CSL zinc finger zf-C2H2_3 PF13878.1 gi|336252337|ref|YP_004595444.1| - 0.14 11.7 0.3 0.28 10.7 0.0 1.7 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO RRN7 PF11781.3 gi|336252337|ref|YP_004595444.1| - 0.49 9.9 3.2 1 8.9 0.2 2.3 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 TruB_N PF01509.13 gi|336252338|ref|YP_004595445.1| - 4.2e-21 75.6 0.3 9.3e-13 48.5 0.0 3.2 1 1 1 2 2 2 2 TruB family pseudouridylate synthase (N terminal domain) DKCLD PF08068.7 gi|336252338|ref|YP_004595445.1| - 5.5e-10 39.0 0.1 1.1e-09 38.0 0.1 1.4 1 0 0 1 1 1 1 DKCLD (NUC011) domain PUA PF01472.15 gi|336252338|ref|YP_004595445.1| - 6.5e-10 38.5 0.2 1.3e-09 37.6 0.1 1.5 1 0 0 1 1 1 1 PUA domain DUF3701 PF12482.3 gi|336252338|ref|YP_004595445.1| - 0.0016 18.1 0.2 0.0071 16.0 0.0 2.0 2 0 0 2 2 2 1 Phage integrase protein Cytidylate_kin2 PF13189.1 gi|336252339|ref|YP_004595446.1| - 1.9e-21 76.7 0.1 6e-20 71.8 0.1 2.0 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.1 gi|336252339|ref|YP_004595446.1| - 2.4e-17 63.4 0.1 3e-17 63.1 0.1 1.1 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|336252339|ref|YP_004595446.1| - 2e-13 51.2 1.1 3.3e-13 50.5 0.7 1.5 1 1 0 1 1 1 1 AAA domain ADK PF00406.17 gi|336252339|ref|YP_004595446.1| - 1.1e-07 31.8 0.0 1.7e-07 31.1 0.0 1.5 1 0 0 1 1 1 1 Adenylate kinase AAA_33 PF13671.1 gi|336252339|ref|YP_004595446.1| - 1.1e-07 31.7 0.1 8.1e-07 29.0 0.1 1.9 1 1 0 1 1 1 1 AAA domain SKI PF01202.17 gi|336252339|ref|YP_004595446.1| - 0.001 18.9 0.8 0.0062 16.4 0.6 2.0 1 1 0 1 1 1 1 Shikimate kinase AAA_28 PF13521.1 gi|336252339|ref|YP_004595446.1| - 0.0014 18.5 0.1 0.0036 17.2 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|336252339|ref|YP_004595446.1| - 0.002 18.1 1.0 0.0069 16.3 0.7 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_19 PF13245.1 gi|336252339|ref|YP_004595446.1| - 0.002 17.8 0.0 0.0054 16.4 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain Cytidylate_kin PF02224.13 gi|336252339|ref|YP_004595446.1| - 0.0033 16.8 0.3 0.0047 16.3 0.2 1.2 1 0 0 1 1 1 1 Cytidylate kinase AAA_22 PF13401.1 gi|336252339|ref|YP_004595446.1| - 0.0041 17.2 0.0 0.0066 16.5 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|336252339|ref|YP_004595446.1| - 0.0053 16.9 0.0 0.0081 16.3 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) KTI12 PF08433.5 gi|336252339|ref|YP_004595446.1| - 0.0054 15.9 0.0 0.0071 15.5 0.0 1.3 1 0 0 1 1 1 1 Chromatin associated protein KTI12 Zeta_toxin PF06414.7 gi|336252339|ref|YP_004595446.1| - 0.0082 15.2 0.0 0.019 14.0 0.0 1.7 2 0 0 2 2 2 1 Zeta toxin Thymidylate_kin PF02223.12 gi|336252339|ref|YP_004595446.1| - 0.01 15.1 0.1 2.8 7.2 0.0 2.4 2 1 0 2 2 2 0 Thymidylate kinase AAA_5 PF07728.9 gi|336252339|ref|YP_004595446.1| - 0.046 13.4 0.0 0.075 12.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) RNA_helicase PF00910.17 gi|336252339|ref|YP_004595446.1| - 0.049 13.8 0.0 0.077 13.1 0.0 1.3 1 0 0 1 1 1 0 RNA helicase AAA_10 PF12846.2 gi|336252339|ref|YP_004595446.1| - 0.052 12.9 0.1 0.12 11.7 0.0 1.7 1 1 1 2 2 2 0 AAA-like domain AAA_30 PF13604.1 gi|336252339|ref|YP_004595446.1| - 0.087 12.3 0.2 0.47 9.9 0.0 2.1 1 1 1 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|336252339|ref|YP_004595446.1| - 0.13 12.5 0.0 0.17 12.1 0.0 1.4 1 1 0 1 1 1 0 ABC transporter AAA_29 PF13555.1 gi|336252339|ref|YP_004595446.1| - 0.17 11.4 0.1 0.38 10.3 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF106 PF01956.11 gi|336252340|ref|YP_004595447.1| - 7e-38 129.7 3.4 1e-37 129.2 2.3 1.2 1 0 0 1 1 1 1 Integral membrane protein DUF106 DUF4175 PF13779.1 gi|336252340|ref|YP_004595447.1| - 0.0049 14.6 8.0 0.0085 13.8 5.6 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4175) IncA PF04156.9 gi|336252340|ref|YP_004595447.1| - 0.011 15.3 0.4 0.024 14.2 0.3 1.5 1 0 0 1 1 1 0 IncA protein 60KD_IMP PF02096.15 gi|336252340|ref|YP_004595447.1| - 0.024 14.3 7.1 0.062 12.9 4.8 1.8 1 1 0 1 1 1 0 60Kd inner membrane protein DUF2937 PF11157.3 gi|336252340|ref|YP_004595447.1| - 0.049 12.9 0.7 7.9 5.7 1.7 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF2937) Vac_Fusion PF02346.11 gi|336252340|ref|YP_004595447.1| - 0.073 12.5 0.3 0.15 11.4 0.2 1.5 1 0 0 1 1 1 0 Chordopoxvirus fusion protein Mnd1 PF03962.10 gi|336252340|ref|YP_004595447.1| - 0.08 12.6 6.0 0.14 11.7 4.2 1.3 1 0 0 1 1 1 0 Mnd1 family Acetyltransf_11 PF13720.1 gi|336252340|ref|YP_004595447.1| - 0.09 13.0 0.8 2.1 8.6 0.2 2.2 2 0 0 2 2 2 0 Udp N-acetylglucosamine O-acyltransferase; Domain 2 OmpH PF03938.9 gi|336252340|ref|YP_004595447.1| - 0.16 11.9 6.2 0.27 11.1 4.3 1.3 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) Fijivirus_P9-2 PF06837.6 gi|336252340|ref|YP_004595447.1| - 0.18 10.9 0.0 0.3 10.1 0.0 1.3 1 0 0 1 1 1 0 Fijivirus P9-2 protein Flagellar_rod PF05149.7 gi|336252340|ref|YP_004595447.1| - 0.48 9.5 8.6 0.13 11.4 3.8 1.5 2 0 0 2 2 2 0 Paraflagellar rod protein DUF4199 PF13858.1 gi|336252340|ref|YP_004595447.1| - 0.95 9.3 5.4 2.4 8.0 2.2 2.6 1 1 0 1 1 1 0 Protein of unknown function (DUF4199) Latarcin PF10279.4 gi|336252340|ref|YP_004595447.1| - 3.8 7.7 13.4 3.1 8.0 5.3 2.9 2 1 1 3 3 3 0 Latarcin precursor Toxin_39 PF15500.1 gi|336252340|ref|YP_004595447.1| - 5.4 7.2 6.3 2 8.5 2.2 1.8 2 0 0 2 2 2 0 Putative RNase-like toxin VWA_2 PF13519.1 gi|336252341|ref|YP_004595448.1| - 1.8e-23 83.5 0.5 1.8e-23 83.5 0.3 2.2 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA PF00092.23 gi|336252341|ref|YP_004595448.1| - 2.8e-16 59.7 1.8 1.6e-11 44.2 0.2 2.4 2 0 0 2 2 2 2 von Willebrand factor type A domain VWA_3 PF13768.1 gi|336252341|ref|YP_004595448.1| - 3e-05 23.7 0.0 0.21 11.2 0.0 2.9 2 1 0 2 2 2 2 von Willebrand factor type A domain DUF1628 PF07790.6 gi|336252341|ref|YP_004595448.1| - 0.0027 18.4 2.6 0.0054 17.4 1.0 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF1628) VWA_CoxE PF05762.9 gi|336252341|ref|YP_004595448.1| - 0.02 14.0 0.1 1.1 8.3 0.0 2.2 2 0 0 2 2 2 0 VWA domain containing CoxE-like protein ADK PF00406.17 gi|336252343|ref|YP_004595450.1| - 1.8e-46 157.7 0.0 2.2e-46 157.4 0.0 1.1 1 0 0 1 1 1 1 Adenylate kinase AAA_17 PF13207.1 gi|336252343|ref|YP_004595450.1| - 3.6e-08 34.2 0.9 8.1e-08 33.1 0.5 1.7 1 1 0 1 1 1 1 AAA domain ADK_lid PF05191.9 gi|336252343|ref|YP_004595450.1| - 1.3e-07 31.1 0.1 2.6e-07 30.1 0.1 1.5 1 0 0 1 1 1 1 Adenylate kinase, active site lid AAA_33 PF13671.1 gi|336252343|ref|YP_004595450.1| - 2.2e-07 30.8 0.0 2.6e-05 24.1 0.0 2.3 1 1 1 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|336252343|ref|YP_004595450.1| - 8.8e-07 29.2 0.5 2.1e-06 28.0 0.1 1.8 1 1 1 2 2 2 1 AAA domain PduV-EutP PF10662.4 gi|336252343|ref|YP_004595450.1| - 0.005 16.3 0.0 0.0085 15.5 0.0 1.4 1 0 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation Zeta_toxin PF06414.7 gi|336252343|ref|YP_004595450.1| - 0.0091 15.1 0.0 0.018 14.1 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin Thymidylate_kin PF02223.12 gi|336252343|ref|YP_004595450.1| - 0.014 14.7 3.0 11 5.4 0.2 3.1 3 0 0 3 3 3 0 Thymidylate kinase MMR_HSR1 PF01926.18 gi|336252343|ref|YP_004595450.1| - 0.036 14.0 0.0 0.046 13.6 0.0 1.4 1 1 0 1 1 1 0 50S ribosome-binding GTPase SKI PF01202.17 gi|336252343|ref|YP_004595450.1| - 0.11 12.4 0.4 0.3 10.9 0.3 1.8 1 1 0 1 1 1 0 Shikimate kinase COX2 PF00116.15 gi|336252345|ref|YP_004595452.1| - 3e-18 65.7 0.0 6.7e-18 64.6 0.0 1.6 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, periplasmic domain FixH PF05751.6 gi|336252345|ref|YP_004595452.1| - 0.013 15.3 0.3 0.16 11.7 0.0 2.3 2 0 0 2 2 2 0 FixH Cupredoxin_1 PF13473.1 gi|336252345|ref|YP_004595452.1| - 0.019 14.8 0.0 0.24 11.2 0.0 2.4 2 1 0 2 2 2 0 Cupredoxin-like domain DUF4577 PF15145.1 gi|336252345|ref|YP_004595452.1| - 0.12 12.2 0.5 0.42 10.5 0.0 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4577) ATG27 PF09451.5 gi|336252345|ref|YP_004595452.1| - 0.34 10.0 2.6 11 5.1 0.0 2.3 2 1 0 2 2 2 0 Autophagy-related protein 27 CcmD PF04995.9 gi|336252345|ref|YP_004595452.1| - 2.9 7.7 4.9 2.2 8.0 1.3 2.1 2 0 0 2 2 2 0 Heme exporter protein D (CcmD) COX1 PF00115.15 gi|336252346|ref|YP_004595453.1| - 1.8e-136 455.3 73.1 1.8e-136 455.3 50.7 2.9 3 1 1 4 4 4 1 Cytochrome C and Quinol oxidase polypeptide I COX3 PF00510.13 gi|336252346|ref|YP_004595453.1| - 7.9e-23 81.2 19.1 7.9e-23 81.2 13.3 3.4 3 1 0 3 3 3 1 Cytochrome c oxidase subunit III Peptidase_S8 PF00082.17 gi|336252347|ref|YP_004595454.1| - 6.1e-53 179.7 4.1 1.3e-52 178.7 2.8 1.6 1 0 0 1 1 1 1 Subtilase family Pentapeptide PF00805.17 gi|336252347|ref|YP_004595454.1| - 0.13 11.4 0.1 7.8 5.8 0.0 2.4 2 0 0 2 2 2 0 Pentapeptide repeats (8 copies) Blo-t-5 PF11642.3 gi|336252347|ref|YP_004595454.1| - 0.19 11.4 0.0 0.32 10.7 0.0 1.2 1 0 0 1 1 1 0 Mite allergen Blo t 5 COX4_pro PF03626.9 gi|336252348|ref|YP_004595455.1| - 9.2e-08 32.0 11.6 1e-07 31.9 8.0 1.0 1 0 0 1 1 1 1 Prokaryotic Cytochrome C oxidase subunit IV DUF95 PF01944.12 gi|336252348|ref|YP_004595455.1| - 0.042 13.4 5.0 0.051 13.2 3.5 1.2 1 0 0 1 1 1 0 Integral membrane protein DUF95 7TMR-DISM_7TM PF07695.6 gi|336252348|ref|YP_004595455.1| - 0.095 12.3 8.9 0.11 12.1 6.2 1.0 1 0 0 1 1 1 0 7TM diverse intracellular signalling Pox_A31 PF05771.6 gi|336252348|ref|YP_004595455.1| - 0.12 12.1 0.4 0.16 11.7 0.3 1.3 1 0 0 1 1 1 0 Poxvirus A31 protein Herpes_US9 PF06072.6 gi|336252348|ref|YP_004595455.1| - 0.18 11.6 0.8 2.2 8.1 0.0 2.5 2 1 1 3 3 3 0 Alphaherpesvirus tegument protein US9 CcoS PF03597.10 gi|336252348|ref|YP_004595455.1| - 0.65 9.4 3.5 14 5.2 0.3 2.4 2 0 0 2 2 2 0 Cytochrome oxidase maturation protein cbb3-type AAA_14 PF13173.1 gi|336252349|ref|YP_004595456.1| - 2.3e-12 46.9 0.0 4e-12 46.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|336252349|ref|YP_004595456.1| - 0.00025 20.7 0.0 0.0011 18.6 0.0 2.0 1 0 0 1 1 1 1 Part of AAA domain AAA_25 PF13481.1 gi|336252349|ref|YP_004595456.1| - 0.00053 19.4 0.0 0.0036 16.7 0.0 2.3 2 1 1 3 3 3 1 AAA domain AAA_17 PF13207.1 gi|336252349|ref|YP_004595456.1| - 0.0019 19.0 0.1 0.0081 16.9 0.0 2.2 2 2 1 3 3 1 1 AAA domain HTH_Mga PF08280.6 gi|336252349|ref|YP_004595456.1| - 0.0026 17.4 0.0 0.0063 16.2 0.0 1.5 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain NACHT PF05729.7 gi|336252349|ref|YP_004595456.1| - 0.0027 17.3 0.0 0.0051 16.4 0.0 1.4 1 0 0 1 1 1 1 NACHT domain AAA_22 PF13401.1 gi|336252349|ref|YP_004595456.1| - 0.0027 17.8 0.0 0.077 13.1 0.0 2.3 1 1 0 1 1 1 1 AAA domain DUF853 PF05872.7 gi|336252349|ref|YP_004595456.1| - 0.003 15.9 0.0 0.0048 15.3 0.0 1.2 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF853) HTH_11 PF08279.7 gi|336252349|ref|YP_004595456.1| - 0.01 15.4 0.0 0.03 13.9 0.0 1.8 1 0 0 1 1 1 0 HTH domain AAA_16 PF13191.1 gi|336252349|ref|YP_004595456.1| - 0.012 15.5 0.0 0.054 13.4 0.0 2.0 1 1 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.1 gi|336252349|ref|YP_004595456.1| - 0.014 14.9 0.0 0.03 13.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|336252349|ref|YP_004595456.1| - 0.021 13.6 0.0 0.038 12.8 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain FtsK_SpoIIIE PF01580.13 gi|336252349|ref|YP_004595456.1| - 0.03 13.7 0.0 0.053 12.9 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family UvrD-helicase PF00580.16 gi|336252349|ref|YP_004595456.1| - 0.033 13.4 0.0 0.056 12.7 0.0 1.3 1 0 0 1 1 1 0 UvrD/REP helicase N-terminal domain Zeta_toxin PF06414.7 gi|336252349|ref|YP_004595456.1| - 0.037 13.1 0.0 0.067 12.2 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin Viral_helicase1 PF01443.13 gi|336252349|ref|YP_004595456.1| - 0.039 13.4 0.0 0.066 12.7 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_10 PF12846.2 gi|336252349|ref|YP_004595456.1| - 0.04 13.3 0.0 1.4 8.2 0.0 2.2 1 1 1 2 2 2 0 AAA-like domain AAA_18 PF13238.1 gi|336252349|ref|YP_004595456.1| - 0.067 13.5 0.0 0.15 12.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|336252349|ref|YP_004595456.1| - 0.076 13.2 0.0 0.15 12.2 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.17 gi|336252349|ref|YP_004595456.1| - 0.087 13.0 0.0 0.63 10.2 0.0 2.2 2 0 0 2 2 2 0 RNA helicase T2SE PF00437.15 gi|336252349|ref|YP_004595456.1| - 0.13 11.1 0.0 0.21 10.4 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein HTH_36 PF13730.1 gi|336252349|ref|YP_004595456.1| - 0.18 11.9 0.0 1.5 9.0 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain TrwB_AAD_bind PF10412.4 gi|336252349|ref|YP_004595456.1| - 0.2 10.2 0.0 0.32 9.5 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain Metallophos_2 PF12850.2 gi|336252350|ref|YP_004595457.1| - 1.6e-12 47.5 0.2 6.3e-12 45.6 0.0 1.9 2 0 0 2 2 2 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|336252350|ref|YP_004595457.1| - 2.4e-12 46.6 1.2 5.6e-12 45.4 0.8 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase HGTP_anticodon PF03129.15 gi|336252350|ref|YP_004595457.1| - 0.02 14.8 0.2 0.23 11.4 0.0 2.2 2 0 0 2 2 2 0 Anticodon binding domain SbcCD_C PF13558.1 gi|336252351|ref|YP_004595458.1| - 9.4e-09 35.0 0.0 2.9e-08 33.5 0.0 1.9 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_13 PF13166.1 gi|336252351|ref|YP_004595458.1| - 5.6e-08 31.7 100.9 0.0013 17.2 11.2 6.4 1 1 5 8 8 8 6 AAA domain AAA_23 PF13476.1 gi|336252351|ref|YP_004595458.1| - 6e-08 33.2 124.3 1.9e+03 -1.1 12.5 8.0 1 1 2 3 3 1 0 AAA domain AAA_29 PF13555.1 gi|336252351|ref|YP_004595458.1| - 1.5e-07 30.8 0.0 3e-07 29.8 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain IncA PF04156.9 gi|336252351|ref|YP_004595458.1| - 4.7e-07 29.5 139.1 0.00023 20.7 15.1 7.6 2 2 5 7 7 7 3 IncA protein Atg14 PF10186.4 gi|336252351|ref|YP_004595458.1| - 6.9e-07 28.4 91.4 0.059 12.3 4.0 7.3 2 2 5 7 7 7 6 UV radiation resistance protein and autophagy-related subunit 14 Reo_sigmaC PF04582.7 gi|336252351|ref|YP_004595458.1| - 1.1e-06 28.1 40.3 0.0028 16.9 0.9 6.5 2 2 5 7 7 7 4 Reovirus sigma C capsid protein Spc7 PF08317.6 gi|336252351|ref|YP_004595458.1| - 1.6e-06 27.0 105.3 0.0015 17.3 6.5 6.6 2 2 4 6 6 6 3 Spc7 kinetochore protein FliJ PF02050.11 gi|336252351|ref|YP_004595458.1| - 6.1e-05 23.0 88.7 0.15 12.1 1.0 9.0 4 2 6 10 10 10 7 Flagellar FliJ protein MscS_porin PF12795.2 gi|336252351|ref|YP_004595458.1| - 6.5e-05 22.3 108.5 0.013 14.8 13.7 6.9 3 2 4 7 7 6 4 Mechanosensitive ion channel porin domain CENP-F_leu_zip PF10473.4 gi|336252351|ref|YP_004595458.1| - 0.00017 21.4 11.3 0.00017 21.4 7.8 8.2 3 2 3 7 7 4 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 AAA_21 PF13304.1 gi|336252351|ref|YP_004595458.1| - 0.00019 21.4 11.0 0.0067 16.4 0.0 3.8 3 2 0 3 3 3 2 AAA domain TPR_MLP1_2 PF07926.7 gi|336252351|ref|YP_004595458.1| - 0.00022 20.9 123.6 0.0027 17.4 13.8 9.6 4 2 6 10 10 10 5 TPR/MLP1/MLP2-like protein Prefoldin_2 PF01920.15 gi|336252351|ref|YP_004595458.1| - 0.00067 19.3 9.8 0.00067 19.3 6.8 13.4 5 3 6 13 13 12 2 Prefoldin subunit DUF258 PF03193.11 gi|336252351|ref|YP_004595458.1| - 0.0046 16.1 0.0 0.012 14.7 0.0 1.8 1 0 0 1 1 1 1 Protein of unknown function, DUF258 Filament PF00038.16 gi|336252351|ref|YP_004595458.1| - 0.0082 15.6 122.3 0.23 10.8 33.5 7.5 1 1 4 5 5 5 1 Intermediate filament protein AAA_27 PF13514.1 gi|336252351|ref|YP_004595458.1| - 0.016 12.9 132.7 0.32 8.6 0.0 4.4 2 1 2 4 4 4 0 AAA domain RNA_helicase PF00910.17 gi|336252351|ref|YP_004595458.1| - 0.017 15.2 0.4 0.39 10.9 0.0 2.8 2 1 0 2 2 2 0 RNA helicase Allexi_40kDa PF05549.6 gi|336252351|ref|YP_004595458.1| - 0.017 14.3 0.3 0.017 14.3 0.2 6.9 2 2 6 8 8 8 0 Allexivirus 40kDa protein V-SNARE_C PF12352.3 gi|336252351|ref|YP_004595458.1| - 0.021 14.9 0.0 0.021 14.9 0.0 4.6 6 1 0 6 6 3 0 Snare region anchored in the vesicle membrane C-terminus MukB PF04310.7 gi|336252351|ref|YP_004595458.1| - 0.022 14.1 0.1 0.12 11.6 0.0 2.3 2 0 0 2 2 2 0 MukB N-terminal TBPIP PF07106.8 gi|336252351|ref|YP_004595458.1| - 0.035 13.6 93.2 0.025 14.1 6.9 8.5 2 2 6 8 8 8 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) AAA_33 PF13671.1 gi|336252351|ref|YP_004595458.1| - 0.2 11.5 0.0 0.2 11.5 0.0 4.9 4 2 2 6 6 6 0 AAA domain Fib_alpha PF08702.5 gi|336252351|ref|YP_004595458.1| - 0.22 11.6 60.9 0.029 14.4 1.3 7.1 3 2 1 6 6 6 0 Fibrinogen alpha/beta chain family AAA PF00004.24 gi|336252351|ref|YP_004595458.1| - 0.3 11.2 0.0 0.3 11.2 0.0 4.6 5 1 0 5 5 3 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|336252351|ref|YP_004595458.1| - 0.56 10.3 0.0 0.56 10.3 0.0 4.9 5 2 0 5 5 3 0 AAA domain AAA_17 PF13207.1 gi|336252351|ref|YP_004595458.1| - 0.59 10.9 0.0 0.59 10.9 0.0 7.5 2 1 1 3 3 1 0 AAA domain Baculo_PEP_C PF04513.7 gi|336252351|ref|YP_004595458.1| - 0.61 9.9 39.9 0.072 12.9 2.7 8.6 3 2 2 8 8 8 0 Baculovirus polyhedron envelope protein, PEP, C terminus Laminin_II PF06009.7 gi|336252351|ref|YP_004595458.1| - 0.77 9.5 71.4 0.012 15.3 3.5 8.5 4 2 5 10 10 9 0 Laminin Domain II WEMBL PF05701.6 gi|336252351|ref|YP_004595458.1| - 0.8 8.0 132.7 4.9 5.4 28.3 6.1 3 2 1 4 4 4 0 Weak chloroplast movement under blue light DUF812 PF05667.6 gi|336252351|ref|YP_004595458.1| - 3.1 6.1 106.4 0.78 8.1 5.5 5.9 1 1 4 5 5 5 0 Protein of unknown function (DUF812) ABC_tran PF00005.22 gi|336252351|ref|YP_004595458.1| - 4 7.7 38.4 0.0065 16.7 7.8 6.6 3 2 0 3 3 1 0 ABC transporter DUF3584 PF12128.3 gi|336252351|ref|YP_004595458.1| - 8.9 3.4 130.5 0.95 6.7 25.8 4.3 3 2 1 4 4 4 0 Protein of unknown function (DUF3584) NurA PF09376.5 gi|336252352|ref|YP_004595459.1| - 5.3e-08 32.6 0.0 7.1e-08 32.2 0.0 1.2 1 0 0 1 1 1 1 NurA domain AAA_10 PF12846.2 gi|336252353|ref|YP_004595460.1| - 5.7e-28 98.2 0.0 1.3e-27 97.0 0.0 1.5 1 0 0 1 1 1 1 AAA-like domain DUF87 PF01935.12 gi|336252353|ref|YP_004595460.1| - 4.4e-07 29.9 0.0 1.2e-06 28.5 0.0 1.7 2 0 0 2 2 2 1 Domain of unknown function DUF87 FtsK_SpoIIIE PF01580.13 gi|336252353|ref|YP_004595460.1| - 1.1e-06 28.3 0.1 0.0041 16.6 0.0 2.2 2 0 0 2 2 2 2 FtsK/SpoIIIE family DUF853 PF05872.7 gi|336252353|ref|YP_004595460.1| - 0.00011 20.7 0.4 0.0023 16.3 0.0 2.1 2 0 0 2 2 2 1 Bacterial protein of unknown function (DUF853) Zot PF05707.7 gi|336252353|ref|YP_004595460.1| - 0.012 15.0 0.0 0.024 14.1 0.0 1.4 1 0 0 1 1 1 0 Zonular occludens toxin (Zot) AAA_22 PF13401.1 gi|336252353|ref|YP_004595460.1| - 0.027 14.5 0.0 1.5 8.9 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|336252353|ref|YP_004595460.1| - 0.12 11.7 0.4 0.87 8.9 0.0 2.6 3 0 0 3 3 3 0 AAA domain PLDc_2 PF13091.1 gi|336252354|ref|YP_004595461.1| - 1.4e-07 31.3 0.0 4e-07 29.8 0.0 1.8 1 0 0 1 1 1 1 PLD-like domain Tyr-DNA_phospho PF06087.7 gi|336252354|ref|YP_004595461.1| - 0.0095 14.6 0.0 0.014 14.0 0.0 1.2 1 0 0 1 1 1 1 Tyrosyl-DNA phosphodiesterase AAA_16 PF13191.1 gi|336252354|ref|YP_004595461.1| - 0.01 15.8 0.6 0.062 13.2 0.0 2.6 3 1 0 3 3 3 0 AAA ATPase domain AAA_22 PF13401.1 gi|336252354|ref|YP_004595461.1| - 0.015 15.4 0.1 0.095 12.8 0.0 2.4 3 0 0 3 3 3 0 AAA domain RE_NgoFVII PF09565.5 gi|336252354|ref|YP_004595461.1| - 0.015 14.2 0.0 0.024 13.5 0.0 1.3 1 0 0 1 1 1 0 NgoFVII restriction endonuclease AAA_18 PF13238.1 gi|336252354|ref|YP_004595461.1| - 0.017 15.3 0.1 0.25 11.6 0.0 2.8 2 1 1 3 3 3 0 AAA domain AAA PF00004.24 gi|336252354|ref|YP_004595461.1| - 0.033 14.3 1.1 3.4 7.8 0.0 3.2 3 1 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) Sigma54_activ_2 PF14532.1 gi|336252354|ref|YP_004595461.1| - 0.12 12.4 0.0 0.34 10.9 0.0 1.7 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_17 PF13207.1 gi|336252354|ref|YP_004595461.1| - 8.9 7.1 7.0 2 9.2 0.4 3.3 2 2 1 3 3 3 0 AAA domain Piwi PF02171.12 gi|336252355|ref|YP_004595462.1| - 6.4e-14 51.6 0.0 1.8e-13 50.1 0.0 1.6 1 1 0 1 1 1 1 Piwi domain Phage_integrase PF00589.17 gi|336252357|ref|YP_004595464.1| - 8.3e-30 103.7 0.1 1.3e-29 103.0 0.0 1.3 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.12 gi|336252357|ref|YP_004595464.1| - 0.0087 16.2 0.0 0.023 14.8 0.0 1.8 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Ribosomal_L2 PF00181.18 gi|336252357|ref|YP_004595464.1| - 0.13 12.2 0.1 1.2 9.2 0.0 2.3 2 1 1 3 3 3 0 Ribosomal Proteins L2, RNA binding domain ApoL PF05461.6 gi|336252358|ref|YP_004595465.1| - 0.23 10.6 1.2 0.32 10.1 0.8 1.3 1 0 0 1 1 1 0 Apolipoprotein L DUF4352 PF11611.3 gi|336252362|ref|YP_004595469.1| - 0.11 12.6 0.0 0.14 12.2 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4352) DUF4238 PF14022.1 gi|336252367|ref|YP_004595474.1| - 6.5e-49 166.5 0.0 7.3e-49 166.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF4238) Resolvase PF00239.16 gi|336252369|ref|YP_004595476.1| - 2.9e-25 88.7 0.2 4.3e-25 88.2 0.1 1.2 1 0 0 1 1 1 1 Resolvase, N terminal domain HTH_23 PF13384.1 gi|336252369|ref|YP_004595476.1| - 2.1e-05 23.9 0.1 5.6e-05 22.6 0.1 1.7 1 0 0 1 1 1 1 Homeodomain-like domain Ketoacyl-synt_C PF02801.17 gi|336252369|ref|YP_004595476.1| - 0.02 14.7 0.0 0.04 13.7 0.0 1.5 1 0 0 1 1 1 0 Beta-ketoacyl synthase, C-terminal domain WCCH PF03716.9 gi|336252370|ref|YP_004595477.1| - 0.056 12.9 0.1 0.08 12.4 0.1 1.3 1 0 0 1 1 1 0 WCCH motif Zn-ribbon_8 PF09723.5 gi|336252372|ref|YP_004595479.1| - 0.097 12.6 0.1 0.15 12.0 0.1 1.3 1 0 0 1 1 1 0 Zinc ribbon domain ParBc PF02195.13 gi|336252374|ref|YP_004595481.1| - 2.8e-11 43.3 0.1 6.2e-11 42.2 0.1 1.6 1 0 0 1 1 1 1 ParB-like nuclease domain Methyltransf_26 PF13659.1 gi|336252374|ref|YP_004595481.1| - 2e-05 24.6 0.8 8.9e-05 22.5 0.5 2.0 1 1 0 1 1 1 1 Methyltransferase domain N6_N4_Mtase PF01555.13 gi|336252374|ref|YP_004595481.1| - 7.4e-05 22.3 0.5 0.0002 20.9 0.0 2.0 2 0 0 2 2 2 1 DNA methylase Methyltransf_11 PF08241.7 gi|336252374|ref|YP_004595481.1| - 0.00024 21.5 0.1 0.056 13.9 0.0 2.7 2 0 0 2 2 2 1 Methyltransferase domain Nop14 PF04147.7 gi|336252374|ref|YP_004595481.1| - 7.9 4.2 22.4 11 3.7 15.5 1.1 1 0 0 1 1 1 0 Nop14-like family DUF1819 PF08849.6 gi|336252375|ref|YP_004595482.1| - 8.4e-09 35.1 0.1 1.2e-08 34.6 0.0 1.2 1 0 0 1 1 1 1 Putative inner membrane protein (DUF1819) HTH_32 PF13565.1 gi|336252375|ref|YP_004595482.1| - 0.21 12.4 4.6 39 5.1 0.3 3.6 3 1 0 3 3 3 0 Homeodomain-like domain TPR_MLP1_2 PF07926.7 gi|336252376|ref|YP_004595483.1| - 0.022 14.5 0.6 0.06 13.0 0.4 1.8 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein ABC_tran PF00005.22 gi|336252376|ref|YP_004595483.1| - 0.05 13.9 0.0 0.17 12.1 0.0 1.9 1 0 0 1 1 1 0 ABC transporter HWE_HK PF07536.9 gi|336252376|ref|YP_004595483.1| - 0.54 10.7 2.7 5.6 7.4 0.2 3.0 3 0 0 3 3 3 0 HWE histidine kinase DUF1788 PF08747.6 gi|336252377|ref|YP_004595484.1| - 4e-13 49.3 0.0 5.4e-13 48.9 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1788) EIIA-man PF03610.11 gi|336252377|ref|YP_004595484.1| - 0.0011 18.9 0.0 0.0018 18.3 0.0 1.3 1 0 0 1 1 1 1 PTS system fructose IIA component Tautomerase PF01361.16 gi|336252377|ref|YP_004595484.1| - 0.032 13.8 0.3 0.078 12.6 0.2 1.6 1 0 0 1 1 1 0 Tautomerase enzyme DUF2538 PF10804.3 gi|336252377|ref|YP_004595484.1| - 0.16 11.8 0.0 0.21 11.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2538) AFG1_ATPase PF03969.11 gi|336252378|ref|YP_004595485.1| - 0.005 15.6 0.0 0.01 14.6 0.0 1.4 1 0 0 1 1 1 1 AFG1-like ATPase AAA_22 PF13401.1 gi|336252378|ref|YP_004595485.1| - 0.031 14.4 0.2 23 5.1 0.0 3.7 2 1 0 3 3 3 0 AAA domain HEPN PF05168.9 gi|336252378|ref|YP_004595485.1| - 0.051 13.4 1.1 0.28 11.0 0.0 2.9 3 0 0 3 3 3 0 HEPN domain MarR_2 PF12802.2 gi|336252380|ref|YP_004595487.1| - 8.4e-17 60.5 0.5 3.7e-09 36.1 0.1 2.4 2 0 0 2 2 2 2 MarR family TrmB PF01978.14 gi|336252380|ref|YP_004595487.1| - 4.8e-16 58.2 0.6 5.4e-07 29.2 0.0 2.5 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|336252380|ref|YP_004595487.1| - 2.6e-13 49.4 0.1 1.7e-05 24.3 0.0 2.4 2 0 0 2 2 2 2 MarR family HTH_IclR PF09339.5 gi|336252380|ref|YP_004595487.1| - 2.3e-11 43.0 2.6 2.3e-06 27.1 0.1 2.9 3 0 0 3 3 3 2 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|336252380|ref|YP_004595487.1| - 3.7e-10 39.0 0.0 0.00067 18.9 0.0 2.6 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding Fe_dep_repress PF01325.14 gi|336252380|ref|YP_004595487.1| - 1e-09 38.1 1.3 0.00049 19.9 0.2 2.6 2 0 0 2 2 2 2 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.15 gi|336252380|ref|YP_004595487.1| - 3.7e-09 36.5 0.4 0.00065 19.7 0.0 2.4 2 0 0 2 2 2 2 Transcriptional regulator HTH_5 PF01022.15 gi|336252380|ref|YP_004595487.1| - 4.1e-09 35.9 0.3 0.00019 21.0 0.0 2.5 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|336252380|ref|YP_004595487.1| - 8.1e-09 35.1 2.2 0.00034 20.3 0.0 2.5 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_11 PF08279.7 gi|336252380|ref|YP_004595487.1| - 1.5e-08 34.1 0.1 5.5e-05 22.7 0.0 2.6 2 0 0 2 2 2 2 HTH domain HTH_Crp_2 PF13545.1 gi|336252380|ref|YP_004595487.1| - 3.5e-08 33.1 0.1 0.00037 20.2 0.0 2.6 2 0 0 2 2 2 2 Crp-like helix-turn-helix domain HTH_29 PF13551.1 gi|336252380|ref|YP_004595487.1| - 1.8e-06 28.0 0.1 0.0044 17.1 0.0 2.4 2 0 0 2 2 2 2 Winged helix-turn helix HTH_27 PF13463.1 gi|336252380|ref|YP_004595487.1| - 2e-06 28.0 0.2 0.1 12.9 0.0 2.5 2 0 0 2 2 2 2 Winged helix DNA-binding domain HTH_23 PF13384.1 gi|336252380|ref|YP_004595487.1| - 4.2e-06 26.2 0.1 0.026 14.1 0.0 2.7 2 0 0 2 2 2 2 Homeodomain-like domain GntR PF00392.16 gi|336252380|ref|YP_004595487.1| - 7e-06 25.3 0.3 0.026 13.9 0.0 3.1 3 0 0 3 3 3 2 Bacterial regulatory proteins, gntR family HTH_28 PF13518.1 gi|336252380|ref|YP_004595487.1| - 1.3e-05 25.0 0.3 0.12 12.4 0.0 3.2 3 0 0 3 3 3 2 Helix-turn-helix domain HTH_38 PF13936.1 gi|336252380|ref|YP_004595487.1| - 0.00027 20.4 0.1 0.031 13.8 0.0 2.8 3 0 0 3 3 2 1 Helix-turn-helix domain Penicillinase_R PF03965.11 gi|336252380|ref|YP_004595487.1| - 0.00052 20.0 0.0 0.25 11.4 0.0 2.5 2 0 0 2 2 2 1 Penicillinase repressor FeoC PF09012.5 gi|336252380|ref|YP_004595487.1| - 0.00077 19.1 0.0 0.041 13.5 0.1 2.4 2 0 0 2 2 2 1 FeoC like transcriptional regulator HTH_45 PF14947.1 gi|336252380|ref|YP_004595487.1| - 0.0011 18.6 0.0 0.025 14.3 0.0 2.4 2 0 0 2 2 2 1 Winged helix-turn-helix Phage_rep_org_N PF09681.5 gi|336252380|ref|YP_004595487.1| - 0.0027 17.2 0.0 0.072 12.6 0.0 2.2 2 0 0 2 2 2 1 N-terminal phage replisome organiser (Phage_rep_org_N) DUF2250 PF10007.4 gi|336252380|ref|YP_004595487.1| - 0.0031 17.3 0.1 1.9 8.4 0.0 2.6 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_AsnC-type PF13404.1 gi|336252380|ref|YP_004595487.1| - 0.0067 15.9 1.7 0.15 11.6 0.0 2.7 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain DUF4423 PF14394.1 gi|336252380|ref|YP_004595487.1| - 0.011 15.2 0.1 4 6.9 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4423) HTH_41 PF14502.1 gi|336252380|ref|YP_004595487.1| - 0.014 14.9 0.1 2.7 7.6 0.0 2.9 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_DeoR PF08220.7 gi|336252380|ref|YP_004595487.1| - 0.016 14.7 0.0 0.068 12.7 0.0 2.1 2 0 0 2 2 1 0 DeoR-like helix-turn-helix domain z-alpha PF02295.12 gi|336252380|ref|YP_004595487.1| - 0.017 14.8 0.0 0.062 13.0 0.0 1.9 2 0 0 2 2 1 0 Adenosine deaminase z-alpha domain HTH_1 PF00126.22 gi|336252380|ref|YP_004595487.1| - 0.019 14.7 0.9 0.73 9.6 0.1 2.6 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family PaaX PF07848.7 gi|336252380|ref|YP_004595487.1| - 0.02 14.8 0.1 7 6.7 0.0 2.4 2 0 0 2 2 2 0 PaaX-like protein HTH_10 PF04967.7 gi|336252380|ref|YP_004595487.1| - 0.036 13.6 0.0 3.4 7.3 0.0 3.0 3 0 0 3 3 3 0 HTH DNA binding domain HTH_17 PF12728.2 gi|336252380|ref|YP_004595487.1| - 0.039 14.2 0.2 8.1 6.7 0.0 3.1 3 0 0 3 3 2 0 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|336252380|ref|YP_004595487.1| - 0.045 13.0 0.4 6.6 6.1 0.1 2.8 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_7 PF02796.10 gi|336252380|ref|YP_004595487.1| - 0.053 13.3 0.0 0.33 10.8 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase HTH_34 PF13601.1 gi|336252380|ref|YP_004595487.1| - 0.086 12.8 0.1 4.1 7.4 0.0 2.4 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_CodY PF08222.6 gi|336252380|ref|YP_004595487.1| - 0.091 12.1 0.0 5.7 6.3 0.0 2.3 2 0 0 2 2 2 0 CodY helix-turn-helix domain LexA_DNA_bind PF01726.11 gi|336252380|ref|YP_004595487.1| - 0.11 12.0 0.0 1.4 8.5 0.0 2.4 2 0 0 2 2 2 0 LexA DNA binding domain Sulfolobus_pRN PF05584.6 gi|336252380|ref|YP_004595487.1| - 0.11 12.4 0.1 1.2 9.1 0.0 2.6 3 0 0 3 3 3 0 Sulfolobus plasmid regulatory protein RPA_C PF08784.6 gi|336252380|ref|YP_004595487.1| - 0.13 12.6 0.0 5 7.6 0.0 2.3 2 0 0 2 2 2 0 Replication protein A C terminal DUF955 PF06114.8 gi|336252380|ref|YP_004595487.1| - 4 7.1 6.1 11 5.7 4.2 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF955) Glyoxalase PF00903.20 gi|336252381|ref|YP_004595488.1| - 0.0042 17.0 0.1 0.065 13.2 0.0 2.5 2 2 1 3 3 3 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NTP_transf_5 PF14907.1 gi|336252381|ref|YP_004595488.1| - 0.011 15.1 0.3 0.029 13.6 0.1 1.9 1 1 0 1 1 1 0 Uncharacterised nucleotidyltransferase HTH_27 PF13463.1 gi|336252381|ref|YP_004595488.1| - 0.08 13.2 0.1 0.26 11.6 0.0 1.9 1 0 0 1 1 1 0 Winged helix DNA-binding domain RPA_C PF08784.6 gi|336252381|ref|YP_004595488.1| - 0.14 12.6 0.0 0.23 11.8 0.0 1.4 1 0 0 1 1 1 0 Replication protein A C terminal Phage_GP20 PF06810.6 gi|336252381|ref|YP_004595488.1| - 0.16 11.4 2.1 0.28 10.5 1.5 1.4 1 0 0 1 1 1 0 Phage minor structural protein GP20 Phi-29_GP16_7 PF06720.6 gi|336252381|ref|YP_004595488.1| - 0.92 9.1 6.0 0.97 9.1 1.5 2.5 1 1 1 2 2 2 0 Bacteriophage phi-29 early protein GP16.7 DUF3018 PF11455.3 gi|336252383|ref|YP_004595490.1| - 0.015 15.1 0.7 0.23 11.3 0.1 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF3018) Cytochrome_C7 PF14522.1 gi|336252383|ref|YP_004595490.1| - 0.034 13.7 0.6 0.067 12.8 0.1 1.7 2 0 0 2 2 2 0 Cytochrome c7 Sigma70_r3 PF04539.11 gi|336252383|ref|YP_004595490.1| - 0.47 10.3 2.1 23 4.9 0.1 2.3 2 0 0 2 2 2 0 Sigma-70 region 3 DUF91 PF01939.11 gi|336252384|ref|YP_004595491.1| - 5e-06 25.8 0.0 9.2e-06 24.9 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function DUF91 Col_cuticle_N PF01484.12 gi|336252386|ref|YP_004595493.1| - 0.34 10.6 0.0 0.34 10.6 0.0 2.3 2 1 1 3 3 3 0 Nematode cuticle collagen N-terminal domain Methyltransf_26 PF13659.1 gi|336252387|ref|YP_004595494.1| - 5e-20 71.6 0.0 1.4e-19 70.2 0.0 1.8 1 0 0 1 1 1 1 Methyltransferase domain N6_Mtase PF02384.11 gi|336252387|ref|YP_004595494.1| - 6.2e-11 41.9 0.0 2.6e-05 23.4 0.0 3.2 3 0 0 3 3 3 2 N-6 DNA Methylase Eco57I PF07669.6 gi|336252387|ref|YP_004595494.1| - 6.7e-05 23.1 0.0 0.00019 21.7 0.0 1.8 1 0 0 1 1 1 1 Eco57I restriction-modification methylase Methyltransf_31 PF13847.1 gi|336252387|ref|YP_004595494.1| - 0.00058 19.4 0.0 0.0018 17.8 0.0 1.9 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|336252387|ref|YP_004595494.1| - 0.0008 19.0 0.0 0.041 13.4 0.0 2.4 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 FlgN PF05130.7 gi|336252387|ref|YP_004595494.1| - 6.6 6.9 11.4 3.5 7.8 1.9 4.0 4 0 0 4 4 4 0 FlgN protein AAA PF00004.24 gi|336252389|ref|YP_004595496.1| - 5.7e-42 143.0 0.0 1.2e-41 141.9 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.7 gi|336252389|ref|YP_004595496.1| - 6.7e-06 25.3 0.0 1.2e-05 24.5 0.0 1.4 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_2 PF07724.9 gi|336252389|ref|YP_004595496.1| - 1e-05 25.5 0.0 2e-05 24.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_22 PF13401.1 gi|336252389|ref|YP_004595496.1| - 0.00037 20.6 0.1 0.09 12.9 0.0 2.9 2 1 1 3 3 3 1 AAA domain AAA_17 PF13207.1 gi|336252389|ref|YP_004595496.1| - 0.00041 21.1 0.0 0.001 19.8 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|336252389|ref|YP_004595496.1| - 0.00073 19.5 0.0 0.0017 18.3 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_5 PF07728.9 gi|336252389|ref|YP_004595496.1| - 0.0013 18.4 0.2 0.043 13.5 0.0 3.2 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) RNA_helicase PF00910.17 gi|336252389|ref|YP_004595496.1| - 0.0042 17.2 0.0 0.009 16.1 0.0 1.6 1 0 0 1 1 1 1 RNA helicase TIP49 PF06068.8 gi|336252389|ref|YP_004595496.1| - 0.0049 15.6 0.0 0.0077 14.9 0.0 1.2 1 0 0 1 1 1 1 TIP49 C-terminus AAA_18 PF13238.1 gi|336252389|ref|YP_004595496.1| - 0.0056 16.9 0.0 0.018 15.3 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|336252389|ref|YP_004595496.1| - 0.0067 16.3 0.0 0.014 15.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain IstB_IS21 PF01695.12 gi|336252389|ref|YP_004595496.1| - 0.011 15.2 0.0 0.02 14.3 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_30 PF13604.1 gi|336252389|ref|YP_004595496.1| - 0.011 15.3 0.0 0.021 14.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_3 PF07726.6 gi|336252389|ref|YP_004595496.1| - 0.03 13.9 0.0 0.078 12.5 0.0 1.7 2 0 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.1 gi|336252389|ref|YP_004595496.1| - 0.039 13.3 0.4 0.74 9.1 0.0 2.3 1 1 1 2 2 2 0 AAA domain Thymidylate_kin PF02223.12 gi|336252389|ref|YP_004595496.1| - 0.075 12.3 0.0 12 5.1 0.0 2.5 1 1 1 2 2 2 0 Thymidylate kinase AAA_14 PF13173.1 gi|336252389|ref|YP_004595496.1| - 0.079 12.8 0.0 0.17 11.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|336252389|ref|YP_004595496.1| - 0.13 11.8 0.0 0.3 10.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain PglZ PF08665.7 gi|336252390|ref|YP_004595497.1| - 9.4e-10 38.4 0.0 3.1e-09 36.7 0.0 1.8 2 0 0 2 2 2 1 PglZ domain HSCB_C PF07743.8 gi|336252390|ref|YP_004595497.1| - 0.087 13.2 0.2 4.1 7.9 0.1 3.0 2 0 0 2 2 2 0 HSCB C-terminal oligomerisation domain SNF2_N PF00176.18 gi|336252392|ref|YP_004595499.1| - 1.4e-26 93.0 0.0 1.4e-24 86.4 0.0 2.3 1 1 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C PF00271.26 gi|336252392|ref|YP_004595499.1| - 5.5e-18 64.6 0.0 1.4e-17 63.3 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|336252392|ref|YP_004595499.1| - 1.1e-08 35.1 0.0 4.1e-08 33.2 0.0 2.1 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|336252392|ref|YP_004595499.1| - 6.4e-06 25.7 0.0 1.9e-05 24.2 0.0 1.8 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C_4 PF13871.1 gi|336252392|ref|YP_004595499.1| - 2.3e-05 23.9 2.0 0.00081 18.9 0.0 2.8 3 0 0 3 3 3 1 Helicase_C-like DUF2075 PF09848.4 gi|336252392|ref|YP_004595499.1| - 0.0087 15.0 3.3 0.01 14.8 0.0 2.7 3 0 0 3 3 3 1 Uncharacterized conserved protein (DUF2075) AAA_34 PF13872.1 gi|336252392|ref|YP_004595499.1| - 0.03 13.0 0.6 0.076 11.7 0.4 1.6 1 1 0 1 1 1 0 P-loop containing NTP hydrolase pore-1 Metallophos PF00149.23 gi|336252394|ref|YP_004595501.1| - 2e-11 43.6 0.8 5e-11 42.3 0.1 1.9 2 0 0 2 2 2 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|336252394|ref|YP_004595501.1| - 3.7e-10 39.8 0.9 9.3e-10 38.5 0.6 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain PepSY_2 PF13670.1 gi|336252395|ref|YP_004595502.1| - 0.14 12.0 0.2 1.6 8.6 0.0 2.4 2 0 0 2 2 2 0 Peptidase propeptide and YPEB domain Miff PF05644.6 gi|336252395|ref|YP_004595502.1| - 1.5 8.4 5.9 4.4 6.8 4.0 1.7 1 1 0 1 1 1 0 Mitochondrial and peroxisomal fission factor Mff DUF2163 PF09931.4 gi|336252396|ref|YP_004595503.1| - 0.016 14.9 2.3 0.03 14.0 1.6 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2163) zf-C2H2_3 PF13878.1 gi|336252397|ref|YP_004595504.1| - 0.016 14.7 2.6 0.019 14.5 0.1 2.0 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO DZR PF12773.2 gi|336252397|ref|YP_004595504.1| - 0.019 14.8 0.7 0.026 14.3 0.5 1.4 1 0 0 1 1 1 0 Double zinc ribbon Lar_restr_allev PF14354.1 gi|336252397|ref|YP_004595504.1| - 0.022 15.0 1.4 0.027 14.7 0.9 1.3 1 1 0 1 1 1 0 Restriction alleviation protein Lar DinB PF05163.7 gi|336252397|ref|YP_004595504.1| - 0.024 14.3 0.2 0.027 14.2 0.2 1.0 1 0 0 1 1 1 0 DinB family zf-trcl PF13451.1 gi|336252397|ref|YP_004595504.1| - 0.057 13.0 3.0 4.4 7.0 0.3 2.4 2 1 0 2 2 2 0 Probable zinc-binding domain DUF2072 PF09845.4 gi|336252397|ref|YP_004595504.1| - 0.07 13.0 2.0 0.095 12.6 1.4 1.3 1 1 0 1 1 1 0 Zn-ribbon containing protein (DUF2072) U1snRNP70_N PF12220.3 gi|336252397|ref|YP_004595504.1| - 0.13 12.5 1.5 0.14 12.4 1.0 1.1 1 0 0 1 1 1 0 U1 small nuclear ribonucleoprotein of 70kDa MW N terminal Cytochrom_c3_2 PF14537.1 gi|336252397|ref|YP_004595504.1| - 0.22 11.8 3.7 0.26 11.6 2.6 1.1 1 0 0 1 1 1 0 Cytochrome c3 Terpene_synth_C PF03936.11 gi|336252397|ref|YP_004595504.1| - 0.24 10.5 2.5 0.25 10.5 0.7 1.6 1 1 1 2 2 2 0 Terpene synthase family, metal binding domain Zn_Tnp_IS91 PF14319.1 gi|336252397|ref|YP_004595504.1| - 0.37 10.3 5.8 0.25 10.8 2.1 1.8 1 1 1 2 2 2 0 Transposase zinc-binding domain DNA_RNApol_7kD PF03604.8 gi|336252397|ref|YP_004595504.1| - 0.45 10.0 2.9 1.3 8.5 2.1 1.7 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Zn-ribbon_8 PF09723.5 gi|336252397|ref|YP_004595504.1| - 2.3 8.2 5.4 4.8 7.2 1.9 2.6 1 1 1 3 3 3 0 Zinc ribbon domain zf-IS66 PF13005.2 gi|336252398|ref|YP_004595505.1| - 0.077 12.9 0.7 0.12 12.4 0.5 1.4 1 0 0 1 1 1 0 zinc-finger binding domain of transposase IS66 UPF0547 PF10571.4 gi|336252398|ref|YP_004595505.1| - 0.47 10.1 4.2 0.2 11.3 1.4 1.5 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 ScdA_N PF04405.9 gi|336252400|ref|YP_004595507.1| - 0.0015 17.8 0.1 0.066 12.6 0.0 2.7 2 0 0 2 2 2 1 Domain of Unknown function (DUF542) Lambda_tail_I PF06805.7 gi|336252400|ref|YP_004595507.1| - 0.029 14.1 0.1 13 5.6 0.0 2.7 2 1 1 3 3 3 0 Bacteriophage lambda tail assembly protein I TcdB_N PF12918.2 gi|336252400|ref|YP_004595507.1| - 0.032 14.3 0.1 0.26 11.3 0.0 2.2 2 0 0 2 2 2 0 TcdB toxin N-terminal helical domain XhlA PF10779.4 gi|336252400|ref|YP_004595507.1| - 0.083 12.8 2.4 7.4 6.5 0.1 2.8 2 0 0 2 2 2 0 Haemolysin XhlA TBPIP PF07106.8 gi|336252400|ref|YP_004595507.1| - 0.11 12.0 1.0 2.1 7.8 0.1 2.2 2 0 0 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Rrf2 PF02082.15 gi|336252400|ref|YP_004595507.1| - 0.12 12.5 0.0 1.3 9.1 0.0 2.2 2 0 0 2 2 2 0 Transcriptional regulator HTH_Tnp_1 PF01527.15 gi|336252400|ref|YP_004595507.1| - 0.18 11.8 7.2 0.23 11.4 0.0 3.7 3 2 0 3 3 3 0 Transposase ERM PF00769.14 gi|336252401|ref|YP_004595508.1| - 2.6e-05 23.8 5.0 3.2e-05 23.5 3.5 1.1 1 0 0 1 1 1 1 Ezrin/radixin/moesin family V_ATPase_I PF01496.14 gi|336252401|ref|YP_004595508.1| - 0.0002 19.3 1.6 0.00023 19.2 1.1 1.0 1 0 0 1 1 1 1 V-type ATPase 116kDa subunit family DUF342 PF03961.8 gi|336252401|ref|YP_004595508.1| - 0.0008 17.9 1.6 0.00098 17.6 1.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF342) bZIP_1 PF00170.16 gi|336252401|ref|YP_004595508.1| - 0.002 18.0 4.5 0.002 18.0 3.1 2.4 1 1 1 2 2 2 1 bZIP transcription factor DUF4618 PF15397.1 gi|336252401|ref|YP_004595508.1| - 0.0023 17.3 5.3 0.12 11.7 0.9 2.1 1 1 1 2 2 2 2 Domain of unknown function (DUF4618) CALCOCO1 PF07888.6 gi|336252401|ref|YP_004595508.1| - 0.0024 16.2 3.5 0.003 15.9 2.4 1.1 1 0 0 1 1 1 1 Calcium binding and coiled-coil domain (CALCOCO1) like Mnd1 PF03962.10 gi|336252401|ref|YP_004595508.1| - 0.0028 17.3 9.3 0.0044 16.7 6.5 1.2 1 0 0 1 1 1 1 Mnd1 family CENP-F_leu_zip PF10473.4 gi|336252401|ref|YP_004595508.1| - 0.0058 16.4 14.5 0.012 15.5 10.1 1.4 1 0 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 HALZ PF02183.13 gi|336252401|ref|YP_004595508.1| - 0.0061 16.2 0.8 0.0061 16.2 0.5 1.8 2 0 0 2 2 1 1 Homeobox associated leucine zipper IFT57 PF10498.4 gi|336252401|ref|YP_004595508.1| - 0.0063 15.3 3.9 0.0081 14.9 2.7 1.1 1 0 0 1 1 1 1 Intra-flagellar transport protein 57 DUF972 PF06156.8 gi|336252401|ref|YP_004595508.1| - 0.0078 16.5 11.1 0.014 15.7 6.4 2.0 1 1 1 2 2 2 1 Protein of unknown function (DUF972) ATG16 PF08614.6 gi|336252401|ref|YP_004595508.1| - 0.0078 16.0 9.1 0.011 15.5 6.3 1.2 1 0 0 1 1 1 1 Autophagy protein 16 (ATG16) IncA PF04156.9 gi|336252401|ref|YP_004595508.1| - 0.0082 15.7 8.6 0.012 15.1 6.0 1.3 1 0 0 1 1 1 1 IncA protein Syntaxin PF00804.20 gi|336252401|ref|YP_004595508.1| - 0.0086 16.2 9.4 0.039 14.1 5.5 2.1 2 0 0 2 2 2 1 Syntaxin TPR_MLP1_2 PF07926.7 gi|336252401|ref|YP_004595508.1| - 0.011 15.4 8.5 0.011 15.4 5.9 1.6 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein HAP1_N PF04849.8 gi|336252401|ref|YP_004595508.1| - 0.011 14.6 10.7 0.016 14.2 7.4 1.1 1 0 0 1 1 1 0 HAP1 N-terminal conserved region Spc7 PF08317.6 gi|336252401|ref|YP_004595508.1| - 0.014 14.0 10.2 0.021 13.5 7.1 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein Fmp27_WPPW PF10359.4 gi|336252401|ref|YP_004595508.1| - 0.016 13.6 3.1 0.019 13.4 2.2 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain DUF2513 PF10711.4 gi|336252401|ref|YP_004595508.1| - 0.02 14.9 1.4 2.4 8.2 0.0 2.7 2 1 0 2 2 2 0 Hypothetical protein (DUF2513) Phage_GP20 PF06810.6 gi|336252401|ref|YP_004595508.1| - 0.02 14.3 4.8 0.032 13.6 3.3 1.4 1 0 0 1 1 1 0 Phage minor structural protein GP20 GAS PF13851.1 gi|336252401|ref|YP_004595508.1| - 0.021 14.0 7.4 1.9 7.6 7.8 2.0 2 0 0 2 2 2 0 Growth-arrest specific micro-tubule binding DUF812 PF05667.6 gi|336252401|ref|YP_004595508.1| - 0.048 12.1 5.5 0.066 11.7 3.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF812) Tup_N PF08581.5 gi|336252401|ref|YP_004595508.1| - 0.052 13.7 5.4 0.083 13.0 3.3 1.7 1 1 0 1 1 1 0 Tup N-terminal MbeD_MobD PF04899.7 gi|336252401|ref|YP_004595508.1| - 0.081 12.8 0.8 0.19 11.6 0.6 1.7 1 0 0 1 1 1 0 MbeD/MobD like Effector_1 PF04518.7 gi|336252401|ref|YP_004595508.1| - 0.082 11.8 1.3 0.11 11.5 0.9 1.1 1 0 0 1 1 1 0 Effector from type III secretion system DUF1664 PF07889.7 gi|336252401|ref|YP_004595508.1| - 0.095 12.5 4.1 0.12 12.1 2.3 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) LXG PF04740.7 gi|336252401|ref|YP_004595508.1| - 0.14 11.9 3.9 0.21 11.3 2.7 1.2 1 0 0 1 1 1 0 LXG domain of WXG superfamily Snapin_Pallidin PF14712.1 gi|336252401|ref|YP_004595508.1| - 0.14 12.4 5.8 1.5 9.1 0.8 2.3 1 1 1 2 2 2 0 Snapin/Pallidin FlaC_arch PF05377.6 gi|336252401|ref|YP_004595508.1| - 0.15 11.9 9.2 2.2 8.2 1.9 2.4 1 1 1 2 2 2 0 Flagella accessory protein C (FlaC) AAA_13 PF13166.1 gi|336252401|ref|YP_004595508.1| - 0.17 10.3 5.9 0.22 9.9 4.1 1.2 1 0 0 1 1 1 0 AAA domain Atg14 PF10186.4 gi|336252401|ref|YP_004595508.1| - 0.22 10.4 5.0 0.33 9.8 3.5 1.2 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 DUF3450 PF11932.3 gi|336252401|ref|YP_004595508.1| - 0.26 10.4 5.6 0.99 8.6 3.9 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF3450) DUF4407 PF14362.1 gi|336252401|ref|YP_004595508.1| - 0.35 9.7 2.4 0.47 9.3 1.7 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) ADIP PF11559.3 gi|336252401|ref|YP_004595508.1| - 0.43 10.4 8.6 0.63 9.9 5.9 1.2 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding DUF948 PF06103.6 gi|336252401|ref|YP_004595508.1| - 0.43 10.4 2.5 13 5.7 0.1 2.2 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) APG6 PF04111.7 gi|336252401|ref|YP_004595508.1| - 0.47 9.4 11.5 0.65 8.9 8.0 1.1 1 0 0 1 1 1 0 Autophagy protein Apg6 Tmemb_cc2 PF10267.4 gi|336252401|ref|YP_004595508.1| - 0.53 8.8 8.3 0.68 8.4 5.7 1.1 1 0 0 1 1 1 0 Predicted transmembrane and coiled-coil 2 protein Occludin_ELL PF07303.8 gi|336252401|ref|YP_004595508.1| - 0.55 10.9 6.3 0.52 11.0 1.7 2.3 1 1 1 2 2 2 0 Occludin homology domain Kinetocho_Slk19 PF12709.2 gi|336252401|ref|YP_004595508.1| - 0.56 10.3 12.0 0.19 11.8 5.2 2.2 1 1 1 2 2 2 0 Central kinetochore-associated TBPIP PF07106.8 gi|336252401|ref|YP_004595508.1| - 0.6 9.6 11.0 1.8 8.0 7.6 1.8 1 1 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Striatin PF08232.7 gi|336252401|ref|YP_004595508.1| - 0.61 10.3 10.1 1.9 8.7 7.0 1.7 1 1 0 1 1 1 0 Striatin family Ax_dynein_light PF10211.4 gi|336252401|ref|YP_004595508.1| - 0.67 9.7 15.4 0.12 12.1 5.5 2.1 1 1 1 2 2 2 0 Axonemal dynein light chain Hormone_1 PF00103.15 gi|336252401|ref|YP_004595508.1| - 0.68 9.2 3.0 0.8 9.0 1.3 1.5 1 1 0 1 1 1 0 Somatotropin hormone family Fib_alpha PF08702.5 gi|336252401|ref|YP_004595508.1| - 0.69 10.0 5.3 1.8 8.6 1.4 2.1 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family DivIC PF04977.10 gi|336252401|ref|YP_004595508.1| - 0.7 9.4 12.8 0.19 11.2 3.5 2.4 1 1 1 2 2 2 0 Septum formation initiator Prominin PF05478.6 gi|336252401|ref|YP_004595508.1| - 0.9 6.9 3.6 4.1 4.8 1.8 1.9 1 1 1 2 2 2 0 Prominin WD40_alt PF14077.1 gi|336252401|ref|YP_004595508.1| - 1.1 8.9 5.3 4.9 6.8 3.2 2.6 2 1 0 2 2 1 0 Alternative WD40 repeat motif DUF4164 PF13747.1 gi|336252401|ref|YP_004595508.1| - 1.2 9.3 10.5 2.1 8.5 6.9 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4164) Nup54 PF13874.1 gi|336252401|ref|YP_004595508.1| - 1.2 8.7 6.9 2.8 7.6 4.8 1.6 1 1 0 1 1 1 0 Nucleoporin complex subunit 54 DUF4446 PF14584.1 gi|336252401|ref|YP_004595508.1| - 1.3 8.8 5.0 4.2 7.1 2.9 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF4446) Cep57_MT_bd PF06657.8 gi|336252401|ref|YP_004595508.1| - 1.3 9.0 8.3 11 6.0 4.2 2.7 1 1 1 2 2 2 0 Centrosome microtubule-binding domain of Cep57 Cauli_AT PF03233.8 gi|336252401|ref|YP_004595508.1| - 1.4 8.5 6.1 3 7.5 4.2 1.5 1 1 0 1 1 1 0 Aphid transmission protein Seryl_tRNA_N PF02403.17 gi|336252401|ref|YP_004595508.1| - 1.5 8.8 12.9 0.52 10.3 6.0 1.9 1 1 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain Fzo_mitofusin PF04799.8 gi|336252401|ref|YP_004595508.1| - 1.6 8.1 6.5 1 8.7 1.6 2.0 1 1 1 2 2 2 0 fzo-like conserved region Laminin_II PF06009.7 gi|336252401|ref|YP_004595508.1| - 1.7 8.3 6.6 3 7.5 4.6 1.4 1 0 0 1 1 1 0 Laminin Domain II DUF4337 PF14235.1 gi|336252401|ref|YP_004595508.1| - 1.8 8.4 9.2 2.4 7.9 5.6 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4337) Cep57_CLD_2 PF14197.1 gi|336252401|ref|YP_004595508.1| - 2 8.4 14.1 0.091 12.7 3.3 2.4 2 0 0 2 2 2 0 Centrosome localisation domain of PPC89 DUF4200 PF13863.1 gi|336252401|ref|YP_004595508.1| - 2.1 8.3 16.5 29 4.6 11.5 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF4200) Med9 PF07544.8 gi|336252401|ref|YP_004595508.1| - 2.9 7.6 7.1 7.7 6.3 4.9 1.7 1 1 0 1 1 1 0 RNA polymerase II transcription mediator complex subunit 9 FlxA PF14282.1 gi|336252401|ref|YP_004595508.1| - 3.5 7.6 6.4 1.8 8.5 2.1 1.9 1 1 1 2 2 2 0 FlxA-like protein Sas10_Utp3 PF04000.10 gi|336252401|ref|YP_004595508.1| - 3.9 7.7 7.8 7 6.9 1.8 2.2 1 1 1 2 2 2 0 Sas10/Utp3/C1D family COG2 PF06148.6 gi|336252401|ref|YP_004595508.1| - 5 6.9 8.6 17 5.3 0.3 2.0 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 Syntaxin-6_N PF09177.6 gi|336252401|ref|YP_004595508.1| - 5 7.5 10.5 2.7e+02 2.0 7.3 2.4 1 1 0 1 1 1 0 Syntaxin 6, N-terminal DivIVA PF05103.8 gi|336252401|ref|YP_004595508.1| - 6 6.9 14.3 5.9 6.9 4.4 2.2 1 1 1 2 2 2 0 DivIVA protein Vfa1 PF08432.5 gi|336252401|ref|YP_004595508.1| - 6.2 6.7 10.5 11 5.9 7.3 1.4 1 0 0 1 1 1 0 AAA-ATPase Vps4-associated protein 1 IFP_35_N PF07334.8 gi|336252401|ref|YP_004595508.1| - 6.9 6.7 10.5 11 6.0 0.5 2.3 2 0 0 2 2 2 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus PDDEXK_1 PF12705.2 gi|336252402|ref|YP_004595509.1| - 2e-16 60.1 1.6 9.2e-16 57.9 1.1 2.0 1 1 0 1 1 1 1 PD-(D/E)XK nuclease superfamily UvrD-helicase PF00580.16 gi|336252403|ref|YP_004595510.1| - 6.4e-52 176.7 0.1 1.9e-51 175.2 0.1 1.7 1 1 0 1 1 1 1 UvrD/REP helicase N-terminal domain UvrD_C PF13361.1 gi|336252403|ref|YP_004595510.1| - 3.1e-32 112.4 0.0 4.7e-18 65.7 0.0 2.2 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain AAA_19 PF13245.1 gi|336252403|ref|YP_004595510.1| - 2.1e-13 49.8 0.0 2.3e-12 46.4 0.0 2.6 3 0 0 3 3 3 1 Part of AAA domain PDDEXK_1 PF12705.2 gi|336252403|ref|YP_004595510.1| - 7.2e-12 45.2 0.3 2.1e-11 43.7 0.2 1.7 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily UvrD_C_2 PF13538.1 gi|336252403|ref|YP_004595510.1| - 7.3e-09 35.7 0.0 0.0028 17.7 0.0 2.8 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain AAA_11 PF13086.1 gi|336252403|ref|YP_004595510.1| - 6.8e-05 22.5 0.0 0.00035 20.2 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|336252403|ref|YP_004595510.1| - 0.00061 19.4 0.0 0.0013 18.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain Viral_helicase1 PF01443.13 gi|336252403|ref|YP_004595510.1| - 0.00066 19.2 0.2 3.4 7.1 0.0 3.5 3 0 0 3 3 3 1 Viral (Superfamily 1) RNA helicase PhoH PF02562.11 gi|336252403|ref|YP_004595510.1| - 0.0024 17.1 0.2 2.4 7.3 0.0 2.7 2 1 0 2 2 2 2 PhoH-like protein DUF2800 PF10926.3 gi|336252403|ref|YP_004595510.1| - 0.0043 16.2 0.0 0.008 15.3 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2800) AAA_12 PF13087.1 gi|336252403|ref|YP_004595510.1| - 0.0057 16.0 0.0 0.25 10.6 0.0 2.8 2 1 0 2 2 2 1 AAA domain HopW1-1 PF15457.1 gi|336252404|ref|YP_004595511.1| - 0.00057 19.0 0.8 0.00083 18.4 0.6 1.2 1 0 0 1 1 1 1 Type III T3SS secreted effector HopW1-1/HopPmaA TMF_TATA_bd PF12325.3 gi|336252404|ref|YP_004595511.1| - 0.0011 18.7 9.5 0.0011 18.7 6.6 2.4 3 1 1 4 4 2 1 TATA element modulatory factor 1 TATA binding Vfa1 PF08432.5 gi|336252404|ref|YP_004595511.1| - 0.0027 17.7 4.6 0.0044 17.0 3.2 1.4 1 0 0 1 1 1 1 AAA-ATPase Vps4-associated protein 1 GrpE PF01025.14 gi|336252404|ref|YP_004595511.1| - 0.0029 17.1 8.0 0.0029 17.1 5.5 1.8 3 0 0 3 3 1 1 GrpE Phage_HK97_TLTM PF06120.6 gi|336252404|ref|YP_004595511.1| - 0.0092 15.3 2.3 0.013 14.8 1.6 1.2 1 0 0 1 1 1 1 Tail length tape measure protein Tup_N PF08581.5 gi|336252404|ref|YP_004595511.1| - 0.012 15.8 8.1 0.012 15.8 5.6 2.6 1 1 1 2 2 2 0 Tup N-terminal Atg14 PF10186.4 gi|336252404|ref|YP_004595511.1| - 0.018 13.9 8.0 0.023 13.6 5.5 1.2 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 Spc7 PF08317.6 gi|336252404|ref|YP_004595511.1| - 0.024 13.3 9.1 0.036 12.7 6.3 1.4 1 0 0 1 1 1 0 Spc7 kinetochore protein APG6 PF04111.7 gi|336252404|ref|YP_004595511.1| - 0.039 12.9 15.7 0.067 12.2 10.9 1.4 1 0 0 1 1 1 0 Autophagy protein Apg6 GAS PF13851.1 gi|336252404|ref|YP_004595511.1| - 0.047 12.8 9.9 0.042 13.0 5.8 1.7 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding Synaptobrevin PF00957.16 gi|336252404|ref|YP_004595511.1| - 0.11 12.1 6.5 0.078 12.5 2.4 2.1 1 1 1 2 2 2 0 Synaptobrevin AcylCoA_dehyd_C PF12186.3 gi|336252404|ref|YP_004595511.1| - 0.19 11.5 5.9 0.19 11.6 1.6 2.6 2 1 0 2 2 2 0 Acyl-CoA dehydrogenase C terminal Sec34 PF04136.10 gi|336252404|ref|YP_004595511.1| - 0.23 11.1 5.5 0.15 11.7 1.4 2.1 2 0 0 2 2 2 0 Sec34-like family Fib_alpha PF08702.5 gi|336252404|ref|YP_004595511.1| - 0.23 11.5 4.4 0.39 10.8 2.8 1.6 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family AATF-Che1 PF13339.1 gi|336252404|ref|YP_004595511.1| - 0.28 11.3 7.5 0.17 12.0 3.4 2.0 2 0 0 2 2 2 0 Apoptosis antagonizing transcription factor Seryl_tRNA_N PF02403.17 gi|336252404|ref|YP_004595511.1| - 0.37 10.8 8.8 0.1 12.6 2.3 2.5 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain Nup54 PF13874.1 gi|336252404|ref|YP_004595511.1| - 0.39 10.3 8.0 1.9 8.1 5.7 2.0 1 1 1 2 2 2 0 Nucleoporin complex subunit 54 DUF4201 PF13870.1 gi|336252404|ref|YP_004595511.1| - 0.39 10.1 10.6 0.021 14.2 3.7 1.7 2 0 0 2 2 1 0 Domain of unknown function (DUF4201) DUF972 PF06156.8 gi|336252404|ref|YP_004595511.1| - 0.55 10.6 9.3 0.8 10.0 5.2 2.3 1 1 1 2 2 1 0 Protein of unknown function (DUF972) Ead_Ea22 PF13935.1 gi|336252404|ref|YP_004595511.1| - 0.92 9.8 15.3 0.4 11.0 6.5 2.5 2 1 0 2 2 2 0 Ead/Ea22-like protein Rab5-bind PF09311.6 gi|336252404|ref|YP_004595511.1| - 1.1 9.1 16.1 0.47 10.3 7.1 2.4 2 1 0 2 2 2 0 Rabaptin-like protein COG2 PF06148.6 gi|336252404|ref|YP_004595511.1| - 1.3 8.8 10.8 0.31 10.9 4.2 2.4 2 1 1 3 3 3 0 COG (conserved oligomeric Golgi) complex component, COG2 V_ATPase_I PF01496.14 gi|336252404|ref|YP_004595511.1| - 1.7 6.4 9.0 2.2 6.0 6.3 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family PSD4 PF07631.6 gi|336252404|ref|YP_004595511.1| - 2 8.7 8.4 0.91 9.8 2.0 2.7 2 1 1 3 3 3 0 Protein of unknown function (DUF1592) CENP-H PF05837.7 gi|336252404|ref|YP_004595511.1| - 2.1 8.5 9.8 4.5 7.5 5.9 2.3 1 1 0 1 1 1 0 Centromere protein H (CENP-H) TBPIP PF07106.8 gi|336252404|ref|YP_004595511.1| - 2.4 7.6 11.5 2.2 7.8 5.2 2.4 1 1 1 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Mod_r PF07200.8 gi|336252404|ref|YP_004595511.1| - 2.4 8.0 14.2 0.92 9.4 6.9 2.3 2 1 0 2 2 2 0 Modifier of rudimentary (Mod(r)) protein YtxH PF12732.2 gi|336252404|ref|YP_004595511.1| - 3 8.2 6.0 2.1e+02 2.3 4.2 3.2 1 1 0 1 1 1 0 YtxH-like protein Peptidase_M3_N PF08439.5 gi|336252404|ref|YP_004595511.1| - 3.1 7.9 9.0 7.3 6.7 2.8 3.1 3 1 0 3 3 2 0 Oligopeptidase F DivIC PF04977.10 gi|336252404|ref|YP_004595511.1| - 4 6.9 10.4 18 4.9 7.2 2.2 1 1 0 1 1 1 0 Septum formation initiator HAMP PF00672.20 gi|336252404|ref|YP_004595511.1| - 4.4 7.5 5.0 2.2 8.4 1.4 2.3 2 1 0 2 2 1 0 HAMP domain DUF342 PF03961.8 gi|336252404|ref|YP_004595511.1| - 6.6 5.0 8.4 11 4.3 5.8 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF342) DUF1664 PF07889.7 gi|336252404|ref|YP_004595511.1| - 6.9 6.4 7.4 3.8 7.3 2.7 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF1664) DDE_5 PF13546.1 gi|336252405|ref|YP_004595512.1| - 0.012 14.4 0.0 0.021 13.6 0.0 1.3 1 0 0 1 1 1 0 DDE superfamily endonuclease Imm1 PF14430.1 gi|336252405|ref|YP_004595512.1| - 0.1 12.7 1.3 1 9.5 0.1 2.6 2 0 0 2 2 2 0 Immunity protein Imm1 DUF3038 PF11237.3 gi|336252405|ref|YP_004595512.1| - 0.1 12.3 0.2 3.1 7.5 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3038) zf-RING_3 PF14369.1 gi|336252407|ref|YP_004595514.1| - 0.069 13.1 0.8 13 5.9 0.0 2.4 2 0 0 2 2 2 0 zinc-finger UPF0547 PF10571.4 gi|336252407|ref|YP_004595514.1| - 0.18 11.5 1.0 0.36 10.5 0.7 1.5 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 zf-Di19 PF05605.7 gi|336252407|ref|YP_004595514.1| - 1.6 8.9 3.4 27 4.9 2.0 2.3 1 1 1 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding Phage_integrase PF00589.17 gi|336252409|ref|YP_004595516.1| - 1.7e-15 57.0 0.0 4.1e-15 55.8 0.0 1.6 1 0 0 1 1 1 1 Phage integrase family DZR PF12773.2 gi|336252409|ref|YP_004595516.1| - 0.0017 18.1 10.7 0.003 17.3 7.4 1.4 1 0 0 1 1 1 1 Double zinc ribbon DUF2614 PF11023.3 gi|336252409|ref|YP_004595516.1| - 0.094 12.4 1.0 0.16 11.7 0.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2614) PocR PF10114.4 gi|336252409|ref|YP_004595516.1| - 0.17 11.0 2.0 0.31 10.1 1.4 1.4 1 0 0 1 1 1 0 Sensory domain found in PocR zinc-ribbons_6 PF07191.7 gi|336252409|ref|YP_004595516.1| - 0.23 11.2 6.8 0.45 10.3 4.7 1.5 1 0 0 1 1 1 0 zinc-ribbons C1_1 PF00130.17 gi|336252409|ref|YP_004595516.1| - 0.5 10.1 9.4 0.13 12.0 3.9 1.9 2 1 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-ribbon_3 PF13248.1 gi|336252409|ref|YP_004595516.1| - 9.3 5.6 8.5 5.9 6.2 2.4 2.4 2 0 0 2 2 2 0 zinc-ribbon domain AAA_22 PF13401.1 gi|336252410|ref|YP_004595517.1| - 1.3e-05 25.3 0.0 0.00017 21.7 0.0 2.1 2 0 0 2 2 2 1 AAA domain KAP_NTPase PF07693.9 gi|336252410|ref|YP_004595517.1| - 0.0015 17.6 0.1 0.031 13.2 0.1 2.5 1 1 1 3 3 3 1 KAP family P-loop domain DUF72 PF01904.13 gi|336252410|ref|YP_004595517.1| - 0.0077 15.9 0.6 0.014 15.1 0.1 1.7 2 0 0 2 2 2 1 Protein of unknown function DUF72 AAA_33 PF13671.1 gi|336252410|ref|YP_004595517.1| - 0.016 15.1 0.9 0.32 10.8 0.0 2.7 2 1 1 3 3 3 0 AAA domain AAA_16 PF13191.1 gi|336252410|ref|YP_004595517.1| - 0.29 11.0 6.6 0.63 9.9 3.0 2.5 2 1 1 3 3 3 0 AAA ATPase domain ThiS PF02597.15 gi|336252411|ref|YP_004595518.1| - 0.0015 18.9 0.3 0.0097 16.3 0.1 2.0 2 0 0 2 2 2 1 ThiS family FEZ PF07763.8 gi|336252411|ref|YP_004595518.1| - 0.024 14.3 0.7 0.029 14.0 0.5 1.0 1 0 0 1 1 1 0 FEZ-like protein Metallophos_2 PF12850.2 gi|336252412|ref|YP_004595519.1| - 4.4e-11 42.8 2.2 1.6e-10 41.0 1.5 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|336252412|ref|YP_004595519.1| - 8.4e-09 35.1 0.5 4.1e-08 32.8 0.3 2.0 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.1 gi|336252412|ref|YP_004595519.1| - 0.063 12.4 0.0 0.088 11.9 0.0 1.2 1 0 0 1 1 1 0 Metallophosphoesterase, calcineurin superfamily DUF3458 PF11940.3 gi|336252414|ref|YP_004595521.1| - 0.047 12.5 0.1 0.054 12.3 0.1 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF3458) Phosphorylase PF00343.15 gi|336252414|ref|YP_004595521.1| - 0.14 10.0 0.1 0.16 9.8 0.1 1.0 1 0 0 1 1 1 0 Carbohydrate phosphorylase PUA PF01472.15 gi|336252416|ref|YP_004595523.1| - 0.016 14.9 0.1 0.025 14.3 0.0 1.2 1 0 0 1 1 1 0 PUA domain TGS PF02824.16 gi|336252416|ref|YP_004595523.1| - 0.021 14.6 0.0 0.036 13.9 0.0 1.4 1 0 0 1 1 1 0 TGS domain SecY PF00344.15 gi|336252417|ref|YP_004595524.1| - 1.9e-90 303.3 22.9 2.3e-90 303.0 15.9 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.4 gi|336252417|ref|YP_004595524.1| - 8.3e-11 41.2 1.7 8.3e-11 41.2 1.2 2.4 3 0 0 3 3 3 1 Plug domain of Sec61p Ribosomal_L18e PF00828.14 gi|336252418|ref|YP_004595525.1| - 4.3e-25 88.5 0.4 4.3e-25 88.5 0.3 1.7 1 1 1 2 2 2 1 Ribosomal protein L18e/L15 Strep_his_triad PF04270.8 gi|336252418|ref|YP_004595525.1| - 0.11 12.2 0.8 0.32 10.7 0.6 1.8 1 0 0 1 1 1 0 Streptococcal histidine triad protein Ribosomal_L30 PF00327.15 gi|336252419|ref|YP_004595526.1| - 2.1e-12 46.3 0.0 3.3e-12 45.7 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e Ribosomal_S5 PF00333.15 gi|336252420|ref|YP_004595527.1| - 6.8e-28 96.2 0.4 1.5e-27 95.1 0.3 1.6 1 0 0 1 1 1 1 Ribosomal protein S5, N-terminal domain Ribosomal_S5_C PF03719.10 gi|336252420|ref|YP_004595527.1| - 3.9e-22 77.3 0.1 7e-22 76.4 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_L18p PF00861.17 gi|336252421|ref|YP_004595528.1| - 5e-37 126.7 0.0 6.2e-37 126.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal L18p/L5e family Ribosomal_L19e PF01280.15 gi|336252422|ref|YP_004595529.1| - 3.2e-56 189.2 6.9 3.5e-56 189.0 4.8 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e SHOCT PF09851.4 gi|336252422|ref|YP_004595529.1| - 0.00052 19.3 1.0 0.00052 19.3 0.7 2.0 2 0 0 2 2 2 1 Short C-terminal domain DUF4019 PF13211.1 gi|336252422|ref|YP_004595529.1| - 0.087 13.0 1.2 0.14 12.4 0.3 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF4019) DUF3253 PF11625.3 gi|336252422|ref|YP_004595529.1| - 0.096 12.5 2.2 1 9.2 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3253) DUF1509 PF07420.6 gi|336252422|ref|YP_004595529.1| - 1.4 8.1 4.7 1.6 7.9 3.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1509) Ribosomal_L32e PF01655.13 gi|336252423|ref|YP_004595530.1| - 4.6e-35 119.9 0.5 9.6e-35 118.9 0.4 1.5 2 0 0 2 2 2 1 Ribosomal protein L32 HHH_5 PF14520.1 gi|336252423|ref|YP_004595530.1| - 1.1e-13 51.1 10.2 7.8e-12 45.1 2.0 2.8 2 1 0 2 2 2 2 Helix-hairpin-helix domain HHH PF00633.18 gi|336252423|ref|YP_004595530.1| - 4.8e-07 29.1 1.5 0.027 14.1 0.0 3.1 3 0 0 3 3 3 2 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.4 gi|336252423|ref|YP_004595530.1| - 4.9e-07 29.1 0.0 1.9e-06 27.3 0.0 1.9 2 0 0 2 2 2 1 Fingers domain of DNA polymerase lambda HHH_2 PF12826.2 gi|336252423|ref|YP_004595530.1| - 8.5e-06 25.5 0.8 2e-05 24.3 0.6 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif Cdd1 PF11731.3 gi|336252423|ref|YP_004595530.1| - 0.00022 21.1 0.0 0.0015 18.4 0.0 2.2 2 0 0 2 2 2 1 Pathogenicity locus HHH_3 PF12836.2 gi|336252423|ref|YP_004595530.1| - 0.055 13.4 0.1 4.1 7.4 0.0 2.7 1 1 1 2 2 2 0 Helix-hairpin-helix motif HHH_8 PF14716.1 gi|336252423|ref|YP_004595530.1| - 0.078 13.1 0.5 2 8.6 0.1 2.7 1 1 1 2 2 2 0 Helix-hairpin-helix domain FtsA PF14450.1 gi|336252423|ref|YP_004595530.1| - 0.11 12.3 0.0 0.14 11.9 0.0 1.2 1 0 0 1 1 1 0 Cell division protein FtsA Ribosomal_L6 PF00347.18 gi|336252424|ref|YP_004595531.1| - 9.5e-27 93.3 0.2 1.7e-12 47.6 0.0 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 HSP20 PF00011.16 gi|336252424|ref|YP_004595531.1| - 0.098 12.5 4.6 0.43 10.4 0.2 3.1 3 1 1 4 4 4 0 Hsp20/alpha crystallin family Ribosomal_S8 PF00410.14 gi|336252425|ref|YP_004595532.1| - 2e-23 82.6 0.0 2.7e-23 82.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_S14 PF00253.16 gi|336252426|ref|YP_004595533.1| - 3.1e-16 58.4 2.1 3.4e-16 58.3 1.4 1.1 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e DUF4428 PF14471.1 gi|336252426|ref|YP_004595533.1| - 0.0025 17.4 0.5 0.0033 17.1 0.3 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4428) DUF2616 PF11077.3 gi|336252426|ref|YP_004595533.1| - 0.063 12.7 0.4 0.066 12.7 0.3 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2616) DZR PF12773.2 gi|336252426|ref|YP_004595533.1| - 0.33 10.8 3.0 1.2 8.9 2.0 1.8 1 1 1 2 2 2 0 Double zinc ribbon Ribosomal_L5_C PF00673.16 gi|336252427|ref|YP_004595534.1| - 2.4e-23 81.6 0.0 5e-23 80.6 0.0 1.6 1 1 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.14 gi|336252427|ref|YP_004595534.1| - 6.4e-15 54.6 0.0 1.3e-14 53.7 0.0 1.5 1 0 0 1 1 1 1 Ribosomal protein L5 TIM-br_sig_trns PF09370.5 gi|336252427|ref|YP_004595534.1| - 0.13 11.2 0.0 0.18 10.8 0.0 1.1 1 0 0 1 1 1 0 TIM-barrel signal transduction protein Ribosomal_S4e PF00900.15 gi|336252428|ref|YP_004595535.1| - 1.1e-26 92.3 0.0 2e-26 91.4 0.0 1.5 1 0 0 1 1 1 1 Ribosomal family S4e RS4NT PF08071.7 gi|336252428|ref|YP_004595535.1| - 7e-12 44.9 0.2 1e-11 44.4 0.2 1.2 1 0 0 1 1 1 1 RS4NT (NUC023) domain S4 PF01479.20 gi|336252428|ref|YP_004595535.1| - 2.3e-05 23.7 0.0 3.9e-05 22.9 0.0 1.4 1 0 0 1 1 1 1 S4 domain S4_2 PF13275.1 gi|336252428|ref|YP_004595535.1| - 0.0051 16.3 0.0 0.016 14.7 0.0 1.8 2 0 0 2 2 2 1 S4 domain Peptidase_S24 PF00717.18 gi|336252428|ref|YP_004595535.1| - 0.12 12.0 0.3 0.51 10.0 0.1 2.1 2 0 0 2 2 2 0 Peptidase S24-like KOW PF00467.24 gi|336252429|ref|YP_004595536.1| - 1.8e-06 27.4 0.5 4.1e-06 26.2 0.3 1.6 1 0 0 1 1 1 1 KOW motif S1 PF00575.18 gi|336252429|ref|YP_004595536.1| - 0.095 12.8 0.5 2.3 8.3 0.1 2.3 2 0 0 2 2 2 0 S1 RNA binding domain Ribosomal_L14 PF00238.14 gi|336252430|ref|YP_004595537.1| - 1.9e-37 127.7 0.1 2.1e-37 127.5 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e Ribosomal_S17 PF00366.15 gi|336252431|ref|YP_004595538.1| - 4e-27 94.0 2.5 5.1e-27 93.7 1.7 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 Pro_Al_protease PF02983.9 gi|336252431|ref|YP_004595538.1| - 0.094 12.6 1.1 0.21 11.5 0.7 1.5 1 0 0 1 1 1 0 Alpha-lytic protease prodomain UPF0086 PF01868.11 gi|336252432|ref|YP_004595539.1| - 2.9e-25 87.7 0.1 5.3e-25 86.8 0.1 1.4 1 1 0 1 1 1 1 Domain of unknown function UPF0086 Ribosomal_L29 PF00831.18 gi|336252433|ref|YP_004595540.1| - 1e-19 69.9 0.2 1.2e-19 69.7 0.2 1.1 1 0 0 1 1 1 1 Ribosomal L29 protein Med9 PF07544.8 gi|336252433|ref|YP_004595540.1| - 0.055 13.2 2.8 0.14 11.9 0.4 2.0 1 1 1 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 FUSC-like PF12805.2 gi|336252433|ref|YP_004595540.1| - 0.12 11.2 0.0 0.14 11.0 0.0 1.0 1 0 0 1 1 1 0 FUSC-like inner membrane protein yccS KH_2 PF07650.12 gi|336252434|ref|YP_004595541.1| - 6.8e-17 60.8 0.0 1.5e-16 59.6 0.0 1.6 1 0 0 1 1 1 1 KH domain Ribosomal_S3_C PF00189.15 gi|336252434|ref|YP_004595541.1| - 9.2e-17 61.0 0.1 1.6e-16 60.2 0.1 1.4 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_1 PF00013.24 gi|336252434|ref|YP_004595541.1| - 0.0016 18.0 0.1 0.0068 16.0 0.0 2.2 2 0 0 2 2 2 1 KH domain KH_3 PF13014.1 gi|336252434|ref|YP_004595541.1| - 0.034 13.8 1.1 0.11 12.2 0.3 2.3 2 0 0 2 2 2 0 KH domain KH_5 PF13184.1 gi|336252434|ref|YP_004595541.1| - 0.064 13.0 0.2 0.5 10.1 0.0 2.5 3 0 0 3 3 3 0 NusA-like KH domain KH_4 PF13083.1 gi|336252434|ref|YP_004595541.1| - 0.47 10.1 0.1 0.47 10.1 0.1 3.0 2 1 0 2 2 2 0 KH domain Ribosomal_L22 PF00237.14 gi|336252435|ref|YP_004595542.1| - 2.3e-25 88.5 0.0 2.7e-25 88.3 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Ribosomal_S19 PF00203.16 gi|336252436|ref|YP_004595543.1| - 2.1e-28 97.7 0.0 3e-28 97.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S19 PaaSYMP PF14738.1 gi|336252436|ref|YP_004595543.1| - 0.16 11.7 2.0 0.21 11.3 1.4 1.2 1 0 0 1 1 1 0 Solute carrier (proton/amino acid symporter), TRAMD3 or PAT1 Siah-Interact_N PF09032.6 gi|336252436|ref|YP_004595543.1| - 0.16 12.0 1.6 0.24 11.4 1.1 1.2 1 0 0 1 1 1 0 Siah interacting protein, N terminal Ribosomal_L2_C PF03947.13 gi|336252437|ref|YP_004595544.1| - 4.2e-46 155.9 1.5 6.1e-46 155.4 1.0 1.2 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.18 gi|336252437|ref|YP_004595544.1| - 1.1e-16 60.5 0.2 2.8e-16 59.2 0.0 1.8 2 0 0 2 2 2 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_L23 PF00276.15 gi|336252438|ref|YP_004595545.1| - 5.6e-21 74.2 1.0 8.5e-21 73.7 0.7 1.3 1 1 0 1 1 1 1 Ribosomal protein L23 PB1 PF00564.19 gi|336252438|ref|YP_004595545.1| - 0.017 14.7 0.2 0.021 14.4 0.1 1.1 1 0 0 1 1 1 0 PB1 domain Ribosomal_L4 PF00573.17 gi|336252439|ref|YP_004595546.1| - 4.7e-45 153.3 0.1 5.4e-45 153.1 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L3 PF00297.17 gi|336252440|ref|YP_004595547.1| - 4.4e-88 295.1 0.1 5.1e-88 294.8 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L3 Methyltrn_RNA_3 PF02598.12 gi|336252441|ref|YP_004595548.1| - 9.3e-52 176.1 0.0 1.1e-51 175.9 0.0 1.0 1 0 0 1 1 1 1 Putative RNA methyltransferase DUF4112 PF13430.1 gi|336252442|ref|YP_004595549.1| - 4.9e-30 103.5 0.6 5.7e-30 103.3 0.4 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4112) Endotoxin_N PF03945.9 gi|336252442|ref|YP_004595549.1| - 0.084 12.2 0.0 0.17 11.2 0.0 1.5 1 0 0 1 1 1 0 delta endotoxin, N-terminal domain DUF77 PF01910.12 gi|336252444|ref|YP_004595551.1| - 4.6e-24 83.8 0.5 5.4e-24 83.6 0.4 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF77 HMA PF00403.21 gi|336252445|ref|YP_004595552.1| - 9.6e-14 51.2 0.3 1.1e-13 51.1 0.2 1.0 1 0 0 1 1 1 1 Heavy-metal-associated domain MCH PF02289.11 gi|336252446|ref|YP_004595553.1| - 8.6e-88 294.3 0.0 9.6e-88 294.2 0.0 1.0 1 0 0 1 1 1 1 Cyclohydrolase (MCH) HAD_2 PF13419.1 gi|336252447|ref|YP_004595554.1| - 7e-23 81.7 0.0 1.5e-22 80.6 0.0 1.6 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|336252447|ref|YP_004595554.1| - 4.5e-11 43.5 0.1 1e-09 39.1 0.1 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|336252447|ref|YP_004595554.1| - 2.7e-10 39.8 0.0 5.1e-10 38.9 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.2 gi|336252447|ref|YP_004595554.1| - 0.14 12.2 0.0 0.19 11.8 0.0 1.2 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase GTP_EFTU PF00009.22 gi|336252448|ref|YP_004595555.1| - 5.6e-35 120.4 0.0 7.8e-35 120.0 0.0 1.1 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.12 gi|336252448|ref|YP_004595555.1| - 1.1e-15 57.5 0.0 3.3e-15 56.0 0.0 1.9 1 0 0 1 1 1 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.20 gi|336252448|ref|YP_004595555.1| - 1.8e-11 43.9 0.4 5.6e-11 42.4 0.3 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 2 GTP_EFTU_D4 PF14578.1 gi|336252448|ref|YP_004595555.1| - 0.004 16.7 0.4 0.011 15.4 0.3 1.7 1 0 0 1 1 1 1 Elongation factor Tu domain 4 MMR_HSR1 PF01926.18 gi|336252448|ref|YP_004595555.1| - 0.0065 16.4 0.0 0.016 15.1 0.0 1.7 1 1 0 1 1 1 1 50S ribosome-binding GTPase ATP_bind_1 PF03029.12 gi|336252448|ref|YP_004595555.1| - 0.016 14.7 0.4 0.15 11.5 0.0 2.0 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein Polysacc_deac_1 PF01522.16 gi|336252448|ref|YP_004595555.1| - 0.05 13.2 0.0 0.085 12.4 0.0 1.3 1 0 0 1 1 1 0 Polysaccharide deacetylase zf-B_box PF00643.19 gi|336252449|ref|YP_004595556.1| - 0.0016 18.2 8.5 0.0072 16.2 2.5 2.2 2 0 0 2 2 2 1 B-box zinc finger zf-HIT PF04438.11 gi|336252449|ref|YP_004595556.1| - 0.016 14.8 1.6 0.016 14.8 1.1 1.9 2 0 0 2 2 2 0 HIT zinc finger zf-C3HC4_2 PF13923.1 gi|336252449|ref|YP_004595556.1| - 0.018 15.0 4.3 0.25 11.4 3.0 2.1 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) DUF3795 PF12675.2 gi|336252449|ref|YP_004595556.1| - 0.19 11.9 9.2 0.22 11.7 6.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3795) zf-C2HC5 PF06221.8 gi|336252449|ref|YP_004595556.1| - 0.2 11.4 7.4 0.48 10.2 5.1 1.7 1 1 0 1 1 1 0 Putative zinc finger motif, C2HC5-type PolC_DP2 PF03833.8 gi|336252449|ref|YP_004595556.1| - 0.28 8.8 4.2 0.26 8.8 2.9 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 zinc_ribbon_2 PF13240.1 gi|336252449|ref|YP_004595556.1| - 0.44 10.1 4.8 4.1 7.0 0.7 2.4 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|336252449|ref|YP_004595556.1| - 0.72 9.7 12.8 1.3 8.8 0.8 2.1 1 1 1 2 2 2 0 Double zinc ribbon DNA_RNApol_7kD PF03604.8 gi|336252449|ref|YP_004595556.1| - 0.91 9.0 7.8 2.4 7.6 0.0 2.9 2 1 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-FPG_IleRS PF06827.9 gi|336252449|ref|YP_004595556.1| - 1.2 8.8 7.5 0.37 10.4 2.4 2.1 2 1 0 2 2 2 0 Zinc finger found in FPG and IleRS zf-C3HC4_3 PF13920.1 gi|336252449|ref|YP_004595556.1| - 1.7 8.3 9.0 5.8 6.6 6.2 1.8 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Prok-RING_2 PF14445.1 gi|336252449|ref|YP_004595556.1| - 2.6 8.0 7.4 3.4 7.6 5.1 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 2 OMPdecase PF00215.19 gi|336252450|ref|YP_004595557.1| - 1.7e-34 119.2 0.0 1.9e-34 119.0 0.0 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family DUF2859 PF11072.3 gi|336252450|ref|YP_004595557.1| - 0.04 13.3 0.0 0.11 12.0 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2859) DZR PF12773.2 gi|336252451|ref|YP_004595558.1| - 0.00075 19.2 1.8 0.0013 18.4 1.2 1.4 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|336252451|ref|YP_004595558.1| - 0.0022 17.1 1.3 0.0041 16.2 0.9 1.5 1 0 0 1 1 1 1 zinc-ribbon domain NOB1_Zn_bind PF08772.6 gi|336252451|ref|YP_004595558.1| - 0.0026 17.5 2.4 0.004 16.9 1.7 1.3 1 0 0 1 1 1 1 Nin one binding (NOB1) Zn-ribbon like Auto_anti-p27 PF06677.7 gi|336252451|ref|YP_004595558.1| - 0.0027 17.4 2.2 0.0038 16.9 1.5 1.2 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zinc-ribbons_6 PF07191.7 gi|336252451|ref|YP_004595558.1| - 0.016 15.0 1.6 0.029 14.1 1.1 1.4 1 1 0 1 1 1 0 zinc-ribbons zf-C3HC4_3 PF13920.1 gi|336252451|ref|YP_004595558.1| - 0.02 14.5 0.4 0.037 13.6 0.3 1.4 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) HypA PF01155.14 gi|336252451|ref|YP_004595558.1| - 0.067 12.8 1.6 0.1 12.3 1.1 1.3 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Zn-ribbon_8 PF09723.5 gi|336252451|ref|YP_004595558.1| - 0.17 11.8 4.1 0.73 9.8 2.9 2.0 1 1 0 1 1 1 0 Zinc ribbon domain AF-4 PF05110.8 gi|336252451|ref|YP_004595558.1| - 0.28 8.9 3.4 0.32 8.8 2.3 1.1 1 0 0 1 1 1 0 AF-4 proto-oncoprotein zf-NADH-PPase PF09297.6 gi|336252451|ref|YP_004595558.1| - 0.36 10.3 4.2 2.8 7.5 0.1 2.4 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain OrfB_Zn_ribbon PF07282.6 gi|336252451|ref|YP_004595558.1| - 0.37 10.4 1.8 3.9 7.1 0.1 2.2 2 0 0 2 2 2 0 Putative transposase DNA-binding domain Nudix_N_2 PF14803.1 gi|336252451|ref|YP_004595558.1| - 1.5 8.5 4.2 20 4.9 0.4 2.4 2 0 0 2 2 2 0 Nudix N-terminal Prok-RING_1 PF14446.1 gi|336252451|ref|YP_004595558.1| - 3.7 7.3 6.2 11 5.8 0.6 2.2 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 zinc_ribbon_2 PF13240.1 gi|336252451|ref|YP_004595558.1| - 4.1 7.0 5.8 15 5.2 3.3 2.1 1 1 2 3 3 3 0 zinc-ribbon domain UPF0547 PF10571.4 gi|336252452|ref|YP_004595559.1| - 0.0014 18.2 4.6 0.019 14.6 0.1 2.3 2 0 0 2 2 2 1 Uncharacterised protein family UPF0547 TFIIS_C PF01096.13 gi|336252452|ref|YP_004595559.1| - 0.0042 16.6 1.6 0.71 9.5 0.2 2.4 2 1 0 2 2 2 2 Transcription factor S-II (TFIIS) DZR PF12773.2 gi|336252452|ref|YP_004595559.1| - 0.012 15.3 1.7 0.016 14.9 1.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon TF_Zn_Ribbon PF08271.7 gi|336252452|ref|YP_004595559.1| - 0.033 13.5 2.0 0.26 10.6 0.1 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding HypA PF01155.14 gi|336252452|ref|YP_004595559.1| - 0.049 13.3 1.0 0.058 13.0 0.7 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Desulfoferrod_N PF06397.7 gi|336252452|ref|YP_004595559.1| - 0.079 12.3 1.0 2.2 7.7 0.1 2.2 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain zf-ribbon_3 PF13248.1 gi|336252452|ref|YP_004595559.1| - 0.094 11.9 4.7 2.7 7.3 0.3 2.3 1 1 0 2 2 2 0 zinc-ribbon domain PolC_DP2 PF03833.8 gi|336252452|ref|YP_004595559.1| - 0.13 9.9 0.4 0.13 9.9 0.2 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 zf-ISL3 PF14690.1 gi|336252452|ref|YP_004595559.1| - 0.16 12.0 2.1 2.7 8.0 0.2 2.1 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc_ribbon_2 PF13240.1 gi|336252452|ref|YP_004595559.1| - 0.59 9.6 6.1 4.3 6.9 4.4 2.0 1 1 1 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|336252452|ref|YP_004595559.1| - 2.5 7.9 6.0 12 5.7 0.5 2.2 1 1 0 2 2 2 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|336252452|ref|YP_004595559.1| - 3.2 7.7 11.1 55 3.8 7.5 2.4 1 1 0 1 1 1 0 Zinc ribbon domain Rubredoxin PF00301.15 gi|336252452|ref|YP_004595559.1| - 8.4 6.3 10.2 1.1e+02 2.7 4.7 2.7 2 1 0 2 2 2 0 Rubredoxin TrkA_C PF02080.16 gi|336252453|ref|YP_004595560.1| - 3.2e-14 52.2 1.2 6.3e-14 51.3 0.8 1.5 1 0 0 1 1 1 1 TrkA-C domain HTH_24 PF13412.1 gi|336252453|ref|YP_004595560.1| - 6.2e-10 38.3 0.0 1.5e-09 37.0 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|336252453|ref|YP_004595560.1| - 6.5e-10 38.3 1.2 1.4e-09 37.3 0.1 2.0 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.7 gi|336252453|ref|YP_004595560.1| - 1.2e-05 24.8 0.0 2.8e-05 23.6 0.0 1.6 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.2 gi|336252453|ref|YP_004595560.1| - 2.7e-05 23.8 0.0 5.3e-05 22.9 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|336252453|ref|YP_004595560.1| - 6.8e-05 22.4 0.1 0.00016 21.2 0.0 1.7 1 1 0 1 1 1 1 MarR family HTH_DeoR PF08220.7 gi|336252453|ref|YP_004595560.1| - 0.00039 19.8 0.0 0.00087 18.7 0.0 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_5 PF01022.15 gi|336252453|ref|YP_004595560.1| - 0.0014 18.2 0.0 0.0022 17.6 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_28 PF13518.1 gi|336252453|ref|YP_004595560.1| - 0.0028 17.6 0.0 0.0051 16.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|336252453|ref|YP_004595560.1| - 0.0056 16.9 0.1 0.14 12.4 0.0 2.4 2 0 0 2 2 2 1 Winged helix DNA-binding domain MarR PF01047.17 gi|336252453|ref|YP_004595560.1| - 0.0071 16.0 0.0 0.017 14.8 0.0 1.6 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.14 gi|336252453|ref|YP_004595560.1| - 0.01 15.7 0.0 0.019 14.8 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.15 gi|336252453|ref|YP_004595560.1| - 0.028 14.5 0.0 0.062 13.4 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator HTH_CodY PF08222.6 gi|336252453|ref|YP_004595560.1| - 0.051 12.9 0.1 0.11 11.8 0.0 1.4 1 0 0 1 1 1 0 CodY helix-turn-helix domain HTH_23 PF13384.1 gi|336252453|ref|YP_004595560.1| - 0.056 13.1 0.0 0.1 12.2 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain TrmB PF01978.14 gi|336252453|ref|YP_004595560.1| - 0.086 12.5 0.0 0.16 11.6 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_30 PF13556.1 gi|336252453|ref|YP_004595560.1| - 0.14 11.7 0.1 0.39 10.3 0.0 1.7 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain TrkH PF02386.11 gi|336252454|ref|YP_004595561.1| - 1.5e-46 158.5 16.9 1.5e-46 158.5 11.7 2.2 1 1 1 2 2 2 2 Cation transport protein Form-deh_trans PF09163.6 gi|336252454|ref|YP_004595561.1| - 0.011 15.2 0.0 0.011 15.2 0.0 3.3 3 0 0 3 3 3 0 Formate dehydrogenase N, transmembrane DUF575 PF04746.7 gi|336252454|ref|YP_004595561.1| - 0.091 12.8 0.2 0.26 11.3 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF575) TrkA_N PF02254.13 gi|336252455|ref|YP_004595562.1| - 7.1e-49 164.6 9.7 3.5e-24 85.0 0.7 2.7 3 0 0 3 3 2 2 TrkA-N domain TrkA_C PF02080.16 gi|336252455|ref|YP_004595562.1| - 2.3e-27 94.3 14.2 4.5e-15 54.9 0.2 3.9 4 0 0 4 4 4 2 TrkA-C domain Shikimate_DH PF01488.15 gi|336252455|ref|YP_004595562.1| - 1.4e-13 51.0 0.9 1.1e-06 28.7 0.1 2.5 2 0 0 2 2 2 2 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.1 gi|336252455|ref|YP_004595562.1| - 4.4e-11 42.9 5.3 3.7e-06 27.1 0.7 2.8 2 1 1 3 3 3 2 Putative NAD(P)-binding F420_oxidored PF03807.12 gi|336252455|ref|YP_004595562.1| - 2.3e-07 31.1 1.8 0.02 15.2 0.0 3.8 3 1 1 4 4 3 2 NADP oxidoreductase coenzyme F420-dependent Pyr_redox_2 PF07992.9 gi|336252455|ref|YP_004595562.1| - 5.1e-06 26.4 0.4 0.089 12.6 0.0 2.7 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Saccharop_dh PF03435.13 gi|336252455|ref|YP_004595562.1| - 6.5e-06 25.3 4.7 0.001 18.1 0.9 2.2 2 0 0 2 2 2 2 Saccharopine dehydrogenase FAD_binding_3 PF01494.14 gi|336252455|ref|YP_004595562.1| - 8.5e-06 25.0 0.2 0.026 13.5 0.0 2.6 3 0 0 3 3 3 2 FAD binding domain 3HCDH_N PF02737.13 gi|336252455|ref|YP_004595562.1| - 9.1e-06 25.4 0.3 0.028 14.0 0.1 2.5 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.11 gi|336252455|ref|YP_004595562.1| - 3.1e-05 23.4 0.1 0.0012 18.2 0.0 2.7 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA Pyr_redox_3 PF13738.1 gi|336252455|ref|YP_004595562.1| - 4.2e-05 23.7 1.5 0.58 10.1 0.3 3.4 2 2 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_2 PF03446.10 gi|336252455|ref|YP_004595562.1| - 0.0003 20.6 0.1 0.6 9.9 0.0 2.8 3 0 0 3 3 3 2 NAD binding domain of 6-phosphogluconate dehydrogenase UDPG_MGDP_dh_N PF03721.9 gi|336252455|ref|YP_004595562.1| - 0.0004 19.8 1.9 0.03 13.6 0.2 2.9 2 1 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Pyr_redox PF00070.22 gi|336252455|ref|YP_004595562.1| - 0.00045 20.5 5.0 0.13 12.6 0.0 3.7 4 0 0 4 4 4 2 Pyridine nucleotide-disulphide oxidoreductase NAD_Gly3P_dh_N PF01210.18 gi|336252455|ref|YP_004595562.1| - 0.00085 19.0 0.0 0.03 14.0 0.0 2.4 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Semialdhyde_dh PF01118.19 gi|336252455|ref|YP_004595562.1| - 0.0012 19.0 0.9 0.35 11.1 0.1 2.8 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain ADH_zinc_N PF00107.21 gi|336252455|ref|YP_004595562.1| - 0.0013 18.3 0.1 0.0013 18.3 0.1 3.2 3 1 0 3 3 3 1 Zinc-binding dehydrogenase CPSase_L_chain PF00289.17 gi|336252455|ref|YP_004595562.1| - 0.0024 17.9 1.9 0.057 13.5 0.0 3.0 3 0 0 3 3 3 1 Carbamoyl-phosphate synthase L chain, N-terminal domain GFO_IDH_MocA PF01408.17 gi|336252455|ref|YP_004595562.1| - 0.0024 18.3 0.8 1.1 9.7 0.0 2.8 2 1 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold IlvN PF07991.7 gi|336252455|ref|YP_004595562.1| - 0.005 16.2 0.9 0.023 14.0 0.1 2.3 2 1 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain 2-Hacid_dh_C PF02826.14 gi|336252455|ref|YP_004595562.1| - 0.018 14.1 0.0 2.3 7.3 0.0 2.5 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_8 PF13450.1 gi|336252455|ref|YP_004595562.1| - 0.094 12.7 0.1 5.3 7.1 0.1 2.6 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain ThiF PF00899.16 gi|336252455|ref|YP_004595562.1| - 0.18 11.5 11.1 1.9 8.3 0.6 4.5 3 2 2 5 5 4 0 ThiF family TrkH PF02386.11 gi|336252456|ref|YP_004595563.1| - 3e-52 177.3 4.8 3e-52 177.3 3.3 2.4 3 0 0 3 3 3 2 Cation transport protein Glyoxalase_2 PF12681.2 gi|336252457|ref|YP_004595564.1| - 4.6e-15 56.1 0.2 5.9e-15 55.7 0.2 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.20 gi|336252457|ref|YP_004595564.1| - 4.2e-13 49.4 0.1 5.1e-13 49.1 0.1 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.1 gi|336252457|ref|YP_004595564.1| - 3.8e-11 42.9 0.1 4.6e-11 42.7 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.1 gi|336252457|ref|YP_004595564.1| - 0.00021 21.2 0.1 0.00051 19.9 0.1 1.7 1 1 0 1 1 1 1 Glyoxalase-like domain MGS PF02142.17 gi|336252458|ref|YP_004595565.1| - 5.1e-14 51.9 0.0 6e-14 51.7 0.0 1.1 1 0 0 1 1 1 1 MGS-like domain TrkA_C PF02080.16 gi|336252459|ref|YP_004595566.1| - 1.1e-18 66.5 0.5 2.9e-18 65.2 0.0 1.9 2 1 0 2 2 2 1 TrkA-C domain Na_H_Exchanger PF00999.16 gi|336252460|ref|YP_004595567.1| - 7.1e-52 176.2 43.2 8.7e-52 175.9 29.9 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family HAD_2 PF13419.1 gi|336252461|ref|YP_004595568.1| - 3.7e-31 108.7 0.2 4.4e-31 108.4 0.2 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|336252461|ref|YP_004595568.1| - 6.7e-14 52.8 3.2 7.3e-13 49.4 2.2 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|336252461|ref|YP_004595568.1| - 6.1e-11 41.8 1.0 8.3e-11 41.4 0.2 1.6 2 0 0 2 2 2 1 HAD-hyrolase-like HAD PF12710.2 gi|336252461|ref|YP_004595568.1| - 0.00034 20.8 0.2 0.00045 20.4 0.1 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Acid_PPase PF12689.2 gi|336252461|ref|YP_004595568.1| - 0.045 13.3 0.0 0.057 13.0 0.0 1.4 1 0 0 1 1 1 0 Acid Phosphatase Hydrolase_6 PF13344.1 gi|336252461|ref|YP_004595568.1| - 0.07 13.0 0.0 0.16 11.8 0.0 1.5 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase Abhydrolase_6 PF12697.2 gi|336252462|ref|YP_004595569.1| - 1.8e-39 135.9 9.3 2.1e-39 135.7 6.5 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|336252462|ref|YP_004595569.1| - 5.4e-20 71.6 0.0 7.5e-20 71.1 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|336252462|ref|YP_004595569.1| - 1.4e-13 50.9 0.0 1.5e-12 47.5 0.0 2.0 1 1 0 1 1 1 1 alpha/beta hydrolase fold DLH PF01738.13 gi|336252462|ref|YP_004595569.1| - 0.00076 18.8 0.0 0.076 12.2 0.0 2.1 2 0 0 2 2 2 2 Dienelactone hydrolase family Thioesterase PF00975.15 gi|336252462|ref|YP_004595569.1| - 0.001 19.3 0.0 0.0016 18.6 0.0 1.3 1 0 0 1 1 1 1 Thioesterase domain Hydrolase_4 PF12146.3 gi|336252462|ref|YP_004595569.1| - 0.0014 18.3 0.0 0.0033 17.2 0.0 1.6 1 0 0 1 1 1 1 Putative lysophospholipase PGAP1 PF07819.8 gi|336252462|ref|YP_004595569.1| - 0.18 11.3 0.0 0.87 9.1 0.0 1.9 1 1 0 1 1 1 0 PGAP1-like protein DUF2240 PF09999.4 gi|336252464|ref|YP_004595571.1| - 6.2e-51 171.6 0.1 7.2e-51 171.4 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2240) RNase_H PF00075.19 gi|336252465|ref|YP_004595572.1| - 0.0017 18.7 0.0 0.0022 18.3 0.0 1.2 1 0 0 1 1 1 1 RNase H SBP_bac_5 PF00496.17 gi|336252466|ref|YP_004595573.1| - 1.9e-68 231.0 2.1 2.4e-68 230.6 1.4 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle BPD_transp_1 PF00528.17 gi|336252467|ref|YP_004595574.1| - 5e-40 136.9 12.0 8.8e-40 136.1 8.3 1.4 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|336252468|ref|YP_004595575.1| - 8.5e-34 116.6 9.1 8.5e-34 116.6 6.3 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|336252468|ref|YP_004595575.1| - 0.002 17.4 1.7 0.0055 16.0 0.0 2.6 3 0 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C ABC_tran PF00005.22 gi|336252469|ref|YP_004595576.1| - 7.3e-24 84.6 0.0 1.3e-23 83.8 0.0 1.4 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|336252469|ref|YP_004595576.1| - 7.2e-18 64.6 0.0 1.8e-17 63.3 0.0 1.8 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|336252469|ref|YP_004595576.1| - 5.1e-10 39.7 0.1 1e-08 35.5 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|336252469|ref|YP_004595576.1| - 6.8e-05 22.4 0.0 0.00016 21.2 0.0 1.7 1 1 0 1 1 1 1 AAA-like domain AAA_22 PF13401.1 gi|336252469|ref|YP_004595576.1| - 0.00017 21.7 0.0 0.34 11.0 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.1 gi|336252469|ref|YP_004595576.1| - 0.0017 17.7 0.0 0.92 8.8 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|336252469|ref|YP_004595576.1| - 0.002 18.1 0.7 0.014 15.3 0.5 2.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_5 PF07728.9 gi|336252469|ref|YP_004595576.1| - 0.0054 16.4 0.0 0.023 14.4 0.0 1.9 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) DUF87 PF01935.12 gi|336252469|ref|YP_004595576.1| - 0.014 15.2 0.0 0.045 13.5 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function DUF87 AAA_15 PF13175.1 gi|336252469|ref|YP_004595576.1| - 0.015 14.3 0.0 0.045 12.8 0.0 1.6 2 0 0 2 2 2 0 AAA ATPase domain DUF2075 PF09848.4 gi|336252469|ref|YP_004595576.1| - 0.021 13.7 0.0 0.035 13.0 0.0 1.4 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_29 PF13555.1 gi|336252469|ref|YP_004595576.1| - 0.033 13.7 0.0 0.061 12.8 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain NACHT PF05729.7 gi|336252469|ref|YP_004595576.1| - 0.09 12.4 0.2 0.42 10.2 0.0 2.1 2 1 0 2 2 2 0 NACHT domain SMC_N PF02463.14 gi|336252469|ref|YP_004595576.1| - 0.12 11.6 0.0 7.6 5.6 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain ABC_tran PF00005.22 gi|336252470|ref|YP_004595577.1| - 7.8e-33 113.6 0.0 1.2e-32 113.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|336252470|ref|YP_004595577.1| - 3.4e-19 68.9 0.3 8.9e-19 67.6 0.2 1.7 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|336252470|ref|YP_004595577.1| - 2.8e-09 37.3 0.1 2.1e-06 27.9 0.1 2.2 1 1 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|336252470|ref|YP_004595577.1| - 0.00024 21.2 0.0 0.00071 19.7 0.0 1.7 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|336252470|ref|YP_004595577.1| - 0.001 18.3 0.1 0.0033 16.7 0.1 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|336252470|ref|YP_004595577.1| - 0.044 13.7 3.3 0.028 14.3 0.5 2.0 2 1 0 2 2 2 0 AAA ATPase domain AAA_29 PF13555.1 gi|336252470|ref|YP_004595577.1| - 0.047 13.2 0.0 0.084 12.4 0.0 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_18 PF13238.1 gi|336252470|ref|YP_004595577.1| - 0.056 13.7 0.1 0.32 11.2 0.0 2.3 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.1 gi|336252470|ref|YP_004595577.1| - 0.058 13.3 0.2 0.23 11.3 0.1 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_5 PF07728.9 gi|336252470|ref|YP_004595577.1| - 0.082 12.6 0.1 2 8.1 0.0 2.4 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AIG1 PF04548.11 gi|336252470|ref|YP_004595577.1| - 0.13 11.3 0.0 0.21 10.6 0.0 1.3 1 0 0 1 1 1 0 AIG1 family AAA_25 PF13481.1 gi|336252470|ref|YP_004595577.1| - 0.16 11.3 1.0 2.8 7.3 0.7 2.4 1 1 0 1 1 1 0 AAA domain Nup96 PF12110.3 gi|336252471|ref|YP_004595578.1| - 0.037 13.1 0.0 0.05 12.7 0.0 1.2 1 0 0 1 1 1 0 Nuclear protein 96 HTH_5 PF01022.15 gi|336252471|ref|YP_004595578.1| - 0.059 13.0 0.1 0.33 10.6 0.0 2.0 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family Peptidase_S76 PF13611.1 gi|336252471|ref|YP_004595578.1| - 0.12 12.5 0.0 0.14 12.2 0.0 1.3 1 0 0 1 1 1 0 Serine peptidase of plant viral polyprotein, P1 EamA PF00892.15 gi|336252472|ref|YP_004595579.1| - 4.5e-30 104.2 18.5 1.7e-16 60.3 4.9 2.2 2 0 0 2 2 2 2 EamA-like transporter family TPT PF03151.11 gi|336252472|ref|YP_004595579.1| - 9.9e-05 22.0 8.4 0.00066 19.3 2.0 2.4 2 0 0 2 2 2 2 Triose-phosphate Transporter family EmrE PF13536.1 gi|336252472|ref|YP_004595579.1| - 0.00017 21.7 27.7 0.0003 20.9 3.0 3.7 1 1 1 3 3 3 2 Multidrug resistance efflux transporter UPF0546 PF10639.4 gi|336252472|ref|YP_004595579.1| - 1.4 8.7 5.9 0.93 9.3 0.3 2.6 3 0 0 3 3 3 0 Uncharacterised protein family UPF0546 Sporozoite_P67 PF05642.6 gi|336252473|ref|YP_004595580.1| - 5 4.8 5.2 5.3 4.7 3.6 1.0 1 0 0 1 1 1 0 Sporozoite P67 surface antigen AAA PF00004.24 gi|336252474|ref|YP_004595581.1| - 1.3e-100 332.8 0.0 1.6e-49 167.4 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|336252474|ref|YP_004595581.1| - 2.5e-29 101.0 0.0 1.7e-28 98.3 0.1 2.4 3 0 0 3 3 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.7 gi|336252474|ref|YP_004595581.1| - 6.3e-15 54.8 0.0 6.7e-07 28.5 0.0 2.6 3 0 0 3 3 2 2 Holliday junction DNA helicase ruvB N-terminus CDC48_2 PF02933.12 gi|336252474|ref|YP_004595581.1| - 2.7e-14 52.5 0.1 1.2e-13 50.4 0.1 2.2 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), domain 2 AAA_16 PF13191.1 gi|336252474|ref|YP_004595581.1| - 3e-14 53.4 0.0 5.7e-07 29.7 0.0 3.2 2 1 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.1 gi|336252474|ref|YP_004595581.1| - 2.7e-13 50.1 0.2 0.00044 20.3 0.1 4.3 2 2 0 2 2 2 2 AAA domain AAA_5 PF07728.9 gi|336252474|ref|YP_004595581.1| - 6.3e-13 48.6 1.4 6.6e-05 22.6 0.1 4.3 3 2 0 3 3 2 2 AAA domain (dynein-related subfamily) AAA_2 PF07724.9 gi|336252474|ref|YP_004595581.1| - 8.5e-13 48.5 0.0 1.5e-05 25.0 0.0 2.8 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_17 PF13207.1 gi|336252474|ref|YP_004595581.1| - 3.6e-12 47.1 0.1 0.00013 22.7 0.0 3.3 3 1 0 3 3 2 2 AAA domain AAA_33 PF13671.1 gi|336252474|ref|YP_004595581.1| - 3.1e-11 43.3 0.0 3e-05 23.9 0.0 2.7 2 0 0 2 2 2 2 AAA domain TIP49 PF06068.8 gi|336252474|ref|YP_004595581.1| - 1.2e-10 40.7 0.0 0.0003 19.6 0.0 3.0 3 0 0 3 3 3 2 TIP49 C-terminus AAA_19 PF13245.1 gi|336252474|ref|YP_004595581.1| - 2.9e-09 36.5 1.0 0.0012 18.5 0.1 2.9 2 0 0 2 2 2 2 Part of AAA domain AAA_14 PF13173.1 gi|336252474|ref|YP_004595581.1| - 3.5e-09 36.6 0.0 0.0016 18.3 0.0 2.4 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.12 gi|336252474|ref|YP_004595581.1| - 1.7e-08 34.1 0.0 0.0057 16.0 0.0 2.5 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_25 PF13481.1 gi|336252474|ref|YP_004595581.1| - 1.2e-07 31.3 6.5 0.93 8.8 0.1 4.6 2 2 1 4 4 4 2 AAA domain Zeta_toxin PF06414.7 gi|336252474|ref|YP_004595581.1| - 2.7e-07 29.9 0.0 0.023 13.8 0.0 2.6 2 0 0 2 2 2 2 Zeta toxin AAA_18 PF13238.1 gi|336252474|ref|YP_004595581.1| - 2.8e-07 30.9 0.0 0.0071 16.6 0.0 2.7 2 0 0 2 2 2 2 AAA domain RNA_helicase PF00910.17 gi|336252474|ref|YP_004595581.1| - 5.6e-07 29.6 0.0 0.047 13.8 0.0 2.5 2 0 0 2 2 2 2 RNA helicase Mg_chelatase PF01078.16 gi|336252474|ref|YP_004595581.1| - 9.9e-07 28.1 0.1 0.043 12.9 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_28 PF13521.1 gi|336252474|ref|YP_004595581.1| - 1.6e-06 28.1 0.0 0.014 15.3 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_3 PF07726.6 gi|336252474|ref|YP_004595581.1| - 4.7e-06 26.2 0.0 0.069 12.7 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|336252474|ref|YP_004595581.1| - 6.6e-06 25.6 0.0 0.18 11.2 0.0 3.1 3 0 0 3 3 3 2 Sigma-54 interaction domain NB-ARC PF00931.17 gi|336252474|ref|YP_004595581.1| - 1.4e-05 24.1 0.0 0.036 12.9 0.0 2.2 2 0 0 2 2 2 2 NB-ARC domain Arch_ATPase PF01637.13 gi|336252474|ref|YP_004595581.1| - 1.8e-05 24.5 0.0 0.065 12.9 0.0 3.4 2 2 1 3 3 3 1 Archaeal ATPase AAA_24 PF13479.1 gi|336252474|ref|YP_004595581.1| - 1.8e-05 24.4 0.1 0.052 13.1 0.0 2.6 2 0 0 2 2 2 2 AAA domain PhoH PF02562.11 gi|336252474|ref|YP_004595581.1| - 2.2e-05 23.8 1.0 0.16 11.1 0.0 3.1 3 0 0 3 3 3 2 PhoH-like protein KaiC PF06745.8 gi|336252474|ref|YP_004595581.1| - 2.8e-05 23.3 1.7 0.43 9.6 0.0 3.5 3 1 0 4 4 3 2 KaiC DUF815 PF05673.8 gi|336252474|ref|YP_004595581.1| - 3.1e-05 23.0 0.0 0.21 10.5 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF815) Sigma54_activ_2 PF14532.1 gi|336252474|ref|YP_004595581.1| - 3.5e-05 23.8 0.0 0.3 11.1 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain ABC_tran PF00005.22 gi|336252474|ref|YP_004595581.1| - 5.5e-05 23.4 0.0 0.38 11.0 0.0 2.6 2 0 0 2 2 2 2 ABC transporter NACHT PF05729.7 gi|336252474|ref|YP_004595581.1| - 6.3e-05 22.7 0.1 0.26 10.9 0.0 3.5 4 0 0 4 4 3 1 NACHT domain AAA_30 PF13604.1 gi|336252474|ref|YP_004595581.1| - 0.00011 21.8 0.3 0.67 9.5 0.0 2.9 3 0 0 3 3 2 2 AAA domain DUF2075 PF09848.4 gi|336252474|ref|YP_004595581.1| - 0.0002 20.4 0.0 0.25 10.2 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) SKI PF01202.17 gi|336252474|ref|YP_004595581.1| - 0.00023 21.0 0.0 0.28 11.0 0.0 2.5 2 0 0 2 2 2 1 Shikimate kinase Parvo_NS1 PF01057.12 gi|336252474|ref|YP_004595581.1| - 0.00036 19.4 0.2 0.42 9.4 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 NTPase_1 PF03266.10 gi|336252474|ref|YP_004595581.1| - 0.0004 20.1 0.4 1.9 8.1 0.0 3.5 2 1 1 3 3 3 2 NTPase AAA_11 PF13086.1 gi|336252474|ref|YP_004595581.1| - 0.00042 19.9 0.0 0.53 9.8 0.0 2.4 2 1 0 2 2 2 2 AAA domain IPT PF01745.11 gi|336252474|ref|YP_004595581.1| - 0.0015 17.8 0.9 0.45 9.6 0.0 2.8 3 0 0 3 3 3 1 Isopentenyl transferase ResIII PF04851.10 gi|336252474|ref|YP_004595581.1| - 0.0022 17.8 0.0 2.3 8.0 0.0 2.4 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit UPF0079 PF02367.12 gi|336252474|ref|YP_004595581.1| - 0.0029 17.2 0.1 1.6 8.3 0.0 2.4 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 Bac_DnaA PF00308.13 gi|336252474|ref|YP_004595581.1| - 0.0035 17.0 0.0 2.1 7.9 0.0 2.6 2 0 0 2 2 2 1 Bacterial dnaA protein KAP_NTPase PF07693.9 gi|336252474|ref|YP_004595581.1| - 0.0037 16.2 0.0 2.4 7.0 0.0 2.9 2 2 0 3 3 3 1 KAP family P-loop domain Viral_helicase1 PF01443.13 gi|336252474|ref|YP_004595581.1| - 0.013 15.0 0.0 1 8.8 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase Vps4_C PF09336.5 gi|336252474|ref|YP_004595581.1| - 0.019 14.8 0.1 0.14 12.0 0.0 2.3 2 0 0 2 2 2 0 Vps4 C terminal oligomerisation domain ATP-synt_ab PF00006.20 gi|336252474|ref|YP_004595581.1| - 0.025 14.0 0.0 7.1 6.0 0.0 2.3 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain T2SE PF00437.15 gi|336252474|ref|YP_004595581.1| - 0.03 13.2 0.0 7.4 5.3 0.0 2.4 2 0 0 2 2 2 0 Type II/IV secretion system protein KTI12 PF08433.5 gi|336252474|ref|YP_004595581.1| - 0.031 13.5 0.0 9.5 5.3 0.0 2.7 3 0 0 3 3 2 0 Chromatin associated protein KTI12 CPT PF07931.7 gi|336252474|ref|YP_004595581.1| - 0.039 13.5 0.0 3.1 7.3 0.0 2.4 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein Torsin PF06309.6 gi|336252474|ref|YP_004595581.1| - 0.046 13.6 0.0 3.8 7.4 0.0 2.4 2 0 0 2 2 2 0 Torsin Arch_fla_DE PF04659.8 gi|336252474|ref|YP_004595581.1| - 0.052 13.3 0.0 0.68 9.7 0.0 2.6 3 0 0 3 3 2 0 Archaeal flagella protein Cytidylate_kin2 PF13189.1 gi|336252474|ref|YP_004595581.1| - 0.061 13.2 0.0 2.2 8.1 0.0 2.3 2 0 0 2 2 2 0 Cytidylate kinase-like family AFG1_ATPase PF03969.11 gi|336252474|ref|YP_004595581.1| - 0.08 11.7 0.0 1.8 7.2 0.0 2.2 2 0 0 2 2 2 0 AFG1-like ATPase Guanylate_kin PF00625.16 gi|336252474|ref|YP_004595581.1| - 0.081 12.3 0.2 43 3.4 0.0 3.4 2 1 1 3 3 3 0 Guanylate kinase DUF111 PF01969.12 gi|336252475|ref|YP_004595582.1| - 2.8e-139 464.2 2.1 3.9e-139 463.7 1.5 1.2 1 0 0 1 1 1 1 Protein of unknown function DUF111 Transcrip_reg PF01709.15 gi|336252475|ref|YP_004595582.1| - 0.0095 15.0 0.2 0.05 12.7 0.1 2.2 2 0 0 2 2 2 1 Transcriptional regulator Caudal_act PF04731.7 gi|336252477|ref|YP_004595584.1| - 0.043 14.1 3.2 0.061 13.6 2.2 1.3 1 0 0 1 1 1 0 Caudal like protein activation region Herpes_capsid PF06112.6 gi|336252477|ref|YP_004595584.1| - 6 6.8 11.9 9.3 6.2 8.2 1.4 1 0 0 1 1 1 0 Gammaherpesvirus capsid protein TruB-C_2 PF09157.6 gi|336252478|ref|YP_004595585.1| - 0.15 11.9 0.6 0.51 10.2 0.4 1.9 1 0 0 1 1 1 0 Pseudouridine synthase II TruB, C-terminal DUF4366 PF14283.1 gi|336252479|ref|YP_004595586.1| - 0.0027 17.1 1.6 0.0034 16.8 1.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4366) DUF460 PF04312.8 gi|336252481|ref|YP_004595588.1| - 0.017 14.6 0.1 0.042 13.3 0.1 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF460) Big_3_3 PF13750.1 gi|336252481|ref|YP_004595588.1| - 0.026 13.9 0.0 0.042 13.2 0.0 1.3 1 0 0 1 1 1 0 Bacterial Ig-like domain (group 3) Rad51 PF08423.6 gi|336252482|ref|YP_004595589.1| - 3.5e-31 108.0 0.0 8.9e-20 70.6 0.0 2.0 2 0 0 2 2 2 2 Rad51 AAA_25 PF13481.1 gi|336252482|ref|YP_004595589.1| - 4.9e-16 58.7 0.4 6.5e-16 58.3 0.3 1.1 1 0 0 1 1 1 1 AAA domain RecA PF00154.16 gi|336252482|ref|YP_004595589.1| - 3.3e-10 39.5 1.0 3.5e-09 36.1 0.1 2.0 1 1 0 2 2 2 1 recA bacterial DNA recombination protein KaiC PF06745.8 gi|336252482|ref|YP_004595589.1| - 1.9e-09 37.0 0.0 7.3e-09 35.0 0.0 1.8 1 1 0 1 1 1 1 KaiC Zot PF05707.7 gi|336252482|ref|YP_004595589.1| - 3.8e-09 36.2 0.0 6e-09 35.6 0.0 1.3 1 0 0 1 1 1 1 Zonular occludens toxin (Zot) DnaB_C PF03796.10 gi|336252482|ref|YP_004595589.1| - 0.0018 17.2 0.0 0.0025 16.7 0.0 1.2 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_10 PF12846.2 gi|336252482|ref|YP_004595589.1| - 0.007 15.8 0.0 1.5 8.1 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain AAA_19 PF13245.1 gi|336252482|ref|YP_004595589.1| - 0.012 15.3 1.2 0.026 14.2 0.3 2.0 2 0 0 2 2 2 0 Part of AAA domain AAA_24 PF13479.1 gi|336252482|ref|YP_004595589.1| - 0.02 14.4 3.5 0.17 11.4 2.8 2.2 2 1 0 2 2 2 0 AAA domain IstB_IS21 PF01695.12 gi|336252482|ref|YP_004595589.1| - 0.031 13.6 0.1 0.11 11.9 0.0 1.8 2 0 0 2 2 2 0 IstB-like ATP binding protein Isochorismatase PF00857.15 gi|336252482|ref|YP_004595589.1| - 0.07 13.0 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 Isochorismatase family Arch_ATPase PF01637.13 gi|336252482|ref|YP_004595589.1| - 0.14 11.8 0.0 0.18 11.5 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase HTH_10 PF04967.7 gi|336252483|ref|YP_004595590.1| - 4.9e-21 74.0 0.0 7.2e-21 73.5 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4_2 PF08281.7 gi|336252483|ref|YP_004595590.1| - 0.0005 19.4 0.2 0.0067 15.8 0.1 2.2 1 1 0 1 1 1 1 Sigma-70, region 4 CBS PF00571.23 gi|336252484|ref|YP_004595591.1| - 2.4e-41 139.2 9.9 1.4e-13 50.3 0.1 4.4 4 0 0 4 4 4 4 CBS domain Ribosomal_S30AE PF02482.14 gi|336252484|ref|YP_004595591.1| - 0.0051 17.2 0.2 0.016 15.5 0.1 1.8 1 0 0 1 1 1 1 Sigma 54 modulation protein / S30EA ribosomal protein DUF2878 PF11086.3 gi|336252485|ref|YP_004595592.1| - 0.046 13.7 0.3 0.054 13.4 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2878) CAP PF00188.21 gi|336252486|ref|YP_004595593.1| - 8.8e-12 45.6 0.1 2.5e-11 44.1 0.1 1.7 1 1 0 1 1 1 1 Cysteine-rich secretory protein family Virul_fac_BrkB PF03631.10 gi|336252487|ref|YP_004595594.1| - 4.3e-45 154.0 26.1 4.9e-45 153.9 18.1 1.0 1 0 0 1 1 1 1 Virulence factor BrkB Mem_trans PF03547.13 gi|336252489|ref|YP_004595596.1| - 9.7e-26 89.9 23.0 1.8e-14 52.8 8.4 2.0 1 1 1 2 2 2 2 Membrane transport protein Glycos_transf_3 PF00591.16 gi|336252490|ref|YP_004595597.1| - 9.2e-99 329.9 2.2 1.2e-98 329.5 1.5 1.1 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.12 gi|336252490|ref|YP_004595597.1| - 1.1e-17 63.3 4.0 1.1e-17 63.3 2.8 2.4 2 0 0 2 2 2 1 Glycosyl transferase family, helical bundle domain DUF2717 PF10911.3 gi|336252490|ref|YP_004595597.1| - 0.0078 15.6 0.0 0.021 14.3 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF2717) PRAI PF00697.17 gi|336252491|ref|YP_004595598.1| - 4.8e-42 143.7 0.1 5.5e-42 143.5 0.0 1.0 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase FMN_dh PF01070.13 gi|336252491|ref|YP_004595598.1| - 0.024 13.5 0.0 0.05 12.4 0.0 1.5 1 1 0 1 1 1 0 FMN-dependent dehydrogenase TMP-TENI PF02581.12 gi|336252491|ref|YP_004595598.1| - 0.042 12.9 0.1 0.13 11.3 0.0 1.9 2 0 0 2 2 2 0 Thiamine monophosphate synthase/TENI Chorismate_bind PF00425.13 gi|336252492|ref|YP_004595599.1| - 2e-89 299.3 0.0 1.4e-88 296.5 0.0 2.0 2 0 0 2 2 2 1 chorismate binding enzyme Anth_synt_I_N PF04715.8 gi|336252492|ref|YP_004595599.1| - 1.9e-21 76.5 1.3 3.1e-20 72.6 0.3 3.3 4 1 0 4 4 4 1 Anthranilate synthase component I, N terminal region CarboxypepD_reg PF13620.1 gi|336252492|ref|YP_004595599.1| - 0.013 15.5 0.0 0.035 14.1 0.0 1.7 1 0 0 1 1 1 0 Carboxypeptidase regulatory-like domain GATase PF00117.23 gi|336252493|ref|YP_004595600.1| - 1.3e-47 161.7 0.0 1.4e-47 161.6 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|336252493|ref|YP_004595600.1| - 7.1e-07 28.8 0.0 1.7e-06 27.6 0.0 1.6 1 1 0 1 1 1 1 Peptidase C26 HTH_CodY PF08222.6 gi|336252494|ref|YP_004595601.1| - 0.15 11.4 1.6 0.22 10.8 1.1 1.3 1 1 0 1 1 1 0 CodY helix-turn-helix domain Trp_oprn_chp PF09534.5 gi|336252494|ref|YP_004595601.1| - 0.5 9.9 13.2 0.51 9.9 9.2 1.0 1 0 0 1 1 1 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) DUF4131 PF13567.1 gi|336252494|ref|YP_004595601.1| - 4 6.7 5.4 4.5 6.6 3.7 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) O-antigen_lig PF13425.1 gi|336252494|ref|YP_004595601.1| - 5.3 7.0 8.6 6.3 6.7 6.0 1.1 1 0 0 1 1 1 0 O-antigen ligase like membrane protein Ribonuc_red_lgC PF02867.10 gi|336252495|ref|YP_004595602.1| - 9.1e-154 512.9 0.0 1.1e-153 512.6 0.0 1.1 1 0 0 1 1 1 1 Ribonucleotide reductase, barrel domain TSCPD PF12637.2 gi|336252495|ref|YP_004595602.1| - 3.8e-28 97.2 0.0 1.5e-27 95.3 0.0 2.2 1 0 0 1 1 1 1 TSCPD domain Ribonuc_red_lgN PF00317.16 gi|336252495|ref|YP_004595602.1| - 2.6e-25 88.0 0.1 1e-24 86.1 0.0 2.1 2 0 0 2 2 2 1 Ribonucleotide reductase, all-alpha domain DUF2461 PF09365.5 gi|336252495|ref|YP_004595602.1| - 0.0037 16.7 0.4 0.13 11.6 0.0 3.0 3 0 0 3 3 3 1 Conserved hypothetical protein (DUF2461) Y_phosphatase3C PF13348.1 gi|336252495|ref|YP_004595602.1| - 0.024 14.7 0.1 0.55 10.3 0.0 3.2 2 0 0 2 2 2 0 Tyrosine phosphatase family C-terminal region zf-ribbon_3 PF13248.1 gi|336252495|ref|YP_004595602.1| - 2.5 7.4 6.3 5.6 6.3 4.4 1.6 1 0 0 1 1 1 0 zinc-ribbon domain Rieske PF00355.21 gi|336252496|ref|YP_004595603.1| - 0.16 11.5 4.6 0.19 11.3 3.2 1.1 1 0 0 1 1 1 0 Rieske [2Fe-2S] domain Auto_anti-p27 PF06677.7 gi|336252496|ref|YP_004595603.1| - 0.62 9.8 4.9 0.83 9.4 3.4 1.2 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Ogr_Delta PF04606.7 gi|336252496|ref|YP_004595603.1| - 0.83 9.3 4.8 1.2 8.8 3.3 1.5 1 1 0 1 1 1 0 Ogr/Delta-like zinc finger zf-Mss51 PF13824.1 gi|336252496|ref|YP_004595603.1| - 0.84 9.5 8.0 1.1 9.1 5.5 1.2 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Fer4_4 PF12800.2 gi|336252496|ref|YP_004595603.1| - 7.8 7.1 6.2 1.9 9.0 2.1 1.6 2 0 0 2 2 2 0 4Fe-4S binding domain KaiC PF06745.8 gi|336252497|ref|YP_004595604.1| - 3e-45 154.0 0.0 3.4e-45 153.9 0.0 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|336252497|ref|YP_004595604.1| - 4.5e-09 35.9 0.0 1.3e-08 34.4 0.0 1.7 1 1 0 1 1 1 1 AAA domain GvpD PF07088.6 gi|336252497|ref|YP_004595604.1| - 2.1e-08 32.9 0.1 0.0007 18.0 0.0 2.4 2 1 0 2 2 2 2 GvpD gas vesicle protein AAA_14 PF13173.1 gi|336252497|ref|YP_004595604.1| - 0.00017 21.4 0.0 0.00058 19.7 0.0 1.9 3 0 0 3 3 2 1 AAA domain AAA_17 PF13207.1 gi|336252497|ref|YP_004595604.1| - 0.00039 21.2 0.0 0.00092 20.0 0.0 1.7 2 0 0 2 2 1 1 AAA domain AAA PF00004.24 gi|336252497|ref|YP_004595604.1| - 0.00047 20.3 0.1 0.0041 17.3 0.1 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|336252497|ref|YP_004595604.1| - 0.00054 20.1 0.0 0.0013 18.8 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|336252497|ref|YP_004595604.1| - 0.00083 19.0 0.0 0.0015 18.2 0.0 1.4 1 0 0 1 1 1 1 Part of AAA domain DnaB_C PF03796.10 gi|336252497|ref|YP_004595604.1| - 0.0012 17.7 0.0 0.0019 17.1 0.0 1.5 1 1 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_33 PF13671.1 gi|336252497|ref|YP_004595604.1| - 0.0022 17.8 0.1 0.0031 17.4 0.1 1.5 1 1 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|336252497|ref|YP_004595604.1| - 0.0023 17.6 0.0 0.0029 17.3 0.0 1.2 1 0 0 1 1 1 1 Archaeal ATPase AAA_18 PF13238.1 gi|336252497|ref|YP_004595604.1| - 0.0036 17.6 0.0 0.0064 16.8 0.0 1.6 1 1 0 1 1 1 1 AAA domain ATP_bind_1 PF03029.12 gi|336252497|ref|YP_004595604.1| - 0.0068 15.9 0.1 0.014 14.9 0.0 1.6 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein IstB_IS21 PF01695.12 gi|336252497|ref|YP_004595604.1| - 0.011 15.2 0.0 0.017 14.5 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein RecA PF00154.16 gi|336252497|ref|YP_004595604.1| - 0.018 14.1 0.2 0.18 10.7 0.0 2.4 3 0 0 3 3 3 0 recA bacterial DNA recombination protein AAA_28 PF13521.1 gi|336252497|ref|YP_004595604.1| - 0.025 14.5 0.0 0.37 10.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain DUF2075 PF09848.4 gi|336252497|ref|YP_004595604.1| - 0.026 13.4 0.0 0.033 13.1 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) ArgK PF03308.11 gi|336252497|ref|YP_004595604.1| - 0.027 13.2 0.2 0.27 9.9 0.1 2.0 1 1 0 1 1 1 0 ArgK protein NTPase_1 PF03266.10 gi|336252497|ref|YP_004595604.1| - 0.036 13.7 0.0 0.1 12.3 0.0 1.8 2 0 0 2 2 2 0 NTPase AAA_10 PF12846.2 gi|336252497|ref|YP_004595604.1| - 0.038 13.4 0.0 0.048 13.0 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain AAA_24 PF13479.1 gi|336252497|ref|YP_004595604.1| - 0.04 13.5 0.0 0.1 12.1 0.0 1.6 2 0 0 2 2 2 0 AAA domain T2SE PF00437.15 gi|336252497|ref|YP_004595604.1| - 0.041 12.7 0.0 0.069 12.0 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein MobB PF03205.9 gi|336252497|ref|YP_004595604.1| - 0.047 13.4 0.0 0.085 12.5 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Miro PF08477.8 gi|336252497|ref|YP_004595604.1| - 0.054 13.9 0.2 0.53 10.7 0.0 2.2 2 0 0 2 2 2 0 Miro-like protein RNA_helicase PF00910.17 gi|336252497|ref|YP_004595604.1| - 0.055 13.6 0.1 0.12 12.6 0.0 1.6 1 1 0 1 1 1 0 RNA helicase cobW PF02492.14 gi|336252497|ref|YP_004595604.1| - 0.063 12.7 0.0 0.17 11.3 0.0 1.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Viral_helicase1 PF01443.13 gi|336252497|ref|YP_004595604.1| - 0.069 12.6 0.0 0.099 12.1 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase NACHT PF05729.7 gi|336252497|ref|YP_004595604.1| - 0.078 12.6 0.0 0.12 11.9 0.0 1.3 1 0 0 1 1 1 0 NACHT domain Zeta_toxin PF06414.7 gi|336252497|ref|YP_004595604.1| - 0.097 11.7 0.0 0.17 10.9 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin DEAD PF00270.24 gi|336252497|ref|YP_004595604.1| - 0.1 12.1 0.0 0.21 11.0 0.0 1.6 1 1 0 1 1 1 0 DEAD/DEAH box helicase AAA_16 PF13191.1 gi|336252497|ref|YP_004595604.1| - 0.1 12.5 0.1 0.18 11.7 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain MAM33 PF02330.11 gi|336252497|ref|YP_004595604.1| - 0.11 12.2 0.1 0.16 11.7 0.1 1.4 1 1 0 1 1 1 0 Mitochondrial glycoprotein KTI12 PF08433.5 gi|336252497|ref|YP_004595604.1| - 0.13 11.4 0.0 0.18 10.9 0.0 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_5 PF07728.9 gi|336252497|ref|YP_004595604.1| - 0.14 11.8 0.0 0.27 10.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_35 PF14516.1 gi|336252497|ref|YP_004595604.1| - 0.16 10.5 0.0 0.23 10.0 0.0 1.1 1 0 0 1 1 1 0 AAA-like domain SNARE_assoc PF09335.6 gi|336252499|ref|YP_004595606.1| - 3.1e-14 53.2 0.4 3.1e-14 53.2 0.3 1.9 2 0 0 2 2 2 1 SNARE associated Golgi protein CBP PF12192.3 gi|336252499|ref|YP_004595606.1| - 0.28 11.1 2.8 3.6 7.6 0.2 2.7 2 0 0 2 2 2 0 Fungal calcium binding protein bPH_3 PF14470.1 gi|336252501|ref|YP_004595608.1| - 0.037 14.3 0.0 0.062 13.5 0.0 1.4 1 0 0 1 1 1 0 Bacterial PH domain N6_N4_Mtase PF01555.13 gi|336252503|ref|YP_004595610.1| - 1.1e-34 119.9 0.0 1.4e-34 119.6 0.0 1.1 1 0 0 1 1 1 1 DNA methylase Methyltransf_26 PF13659.1 gi|336252503|ref|YP_004595610.1| - 5.3e-11 42.5 0.2 0.00024 21.1 0.0 2.4 2 0 0 2 2 2 2 Methyltransferase domain UPF0020 PF01170.13 gi|336252503|ref|YP_004595610.1| - 0.0082 15.7 0.0 1 8.9 0.0 2.3 2 0 0 2 2 2 2 Putative RNA methylase family UPF0020 FCD PF07729.7 gi|336252503|ref|YP_004595610.1| - 0.073 13.4 2.1 0.8 10.0 0.0 3.3 4 0 0 4 4 4 0 FCD domain Peptidase_S46 PF10459.4 gi|336252504|ref|YP_004595611.1| - 0.0047 15.4 0.2 0.0071 14.8 0.1 1.1 1 0 0 1 1 1 1 Peptidase S46 PolC_DP2 PF03833.8 gi|336252504|ref|YP_004595611.1| - 0.05 11.2 2.5 0.055 11.1 1.8 1.1 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 FMN_red PF03358.10 gi|336252506|ref|YP_004595613.1| - 3.4e-37 127.2 0.0 4.1e-37 127.0 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|336252506|ref|YP_004595613.1| - 4.6e-11 42.5 0.0 6.5e-11 42.1 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold Usp PF00582.21 gi|336252506|ref|YP_004595613.1| - 0.14 12.3 0.6 0.34 11.0 0.4 1.5 1 1 0 1 1 1 0 Universal stress protein family ABC_tran PF00005.22 gi|336252507|ref|YP_004595614.1| - 7.8e-30 103.9 0.0 1.1e-29 103.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|336252507|ref|YP_004595614.1| - 1.6e-16 61.1 0.0 4.4e-11 43.2 0.0 2.1 2 0 0 2 2 2 2 AAA domain DUF4162 PF13732.1 gi|336252507|ref|YP_004595614.1| - 0.00015 22.1 0.0 0.00025 21.5 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_29 PF13555.1 gi|336252507|ref|YP_004595614.1| - 0.00049 19.5 0.1 0.001 18.5 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|336252507|ref|YP_004595614.1| - 0.0014 18.6 0.0 0.0048 16.8 0.0 1.8 1 1 1 2 2 2 1 AAA ATPase domain AAA_23 PF13476.1 gi|336252507|ref|YP_004595614.1| - 0.01 16.2 0.0 0.015 15.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|336252507|ref|YP_004595614.1| - 0.01 15.1 0.0 1.4 8.0 0.0 2.3 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.1 gi|336252507|ref|YP_004595614.1| - 0.017 14.9 0.0 0.047 13.5 0.0 1.8 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA PF00004.24 gi|336252507|ref|YP_004595614.1| - 0.026 14.7 0.1 0.13 12.4 0.0 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.1 gi|336252507|ref|YP_004595614.1| - 0.04 13.4 0.0 0.093 12.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain PqqD PF05402.7 gi|336252507|ref|YP_004595614.1| - 0.042 13.8 1.1 18 5.4 0.0 3.4 2 2 2 4 4 4 0 Coenzyme PQQ synthesis protein D (PqqD) SRP54 PF00448.17 gi|336252507|ref|YP_004595614.1| - 0.046 13.1 0.0 0.069 12.5 0.0 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Rad17 PF03215.10 gi|336252507|ref|YP_004595614.1| - 0.076 11.6 0.0 0.095 11.3 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein KdpD PF02702.12 gi|336252507|ref|YP_004595614.1| - 0.1 11.6 0.0 0.22 10.6 0.0 1.5 1 0 0 1 1 1 0 Osmosensitive K+ channel His kinase sensor domain Mg_chelatase PF01078.16 gi|336252507|ref|YP_004595614.1| - 0.14 11.2 0.0 0.23 10.6 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI ABC2_membrane PF01061.19 gi|336252508|ref|YP_004595615.1| - 1.9e-32 112.1 10.7 2.3e-32 111.8 7.4 1.1 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|336252508|ref|YP_004595615.1| - 1.3e-17 63.8 9.9 1.3e-17 63.8 6.8 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|336252508|ref|YP_004595615.1| - 5e-08 32.3 11.4 6.3e-08 32.0 7.9 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|336252508|ref|YP_004595615.1| - 0.0053 15.6 14.6 0.0091 14.8 9.8 1.5 1 1 1 2 2 2 1 ABC-2 family transporter protein HhH-GPD PF00730.20 gi|336252509|ref|YP_004595616.1| - 5.6e-17 61.9 0.0 1.3e-16 60.7 0.0 1.6 2 0 0 2 2 2 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|336252509|ref|YP_004595616.1| - 5e-09 35.3 0.0 1.1e-08 34.2 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif HemN_C PF06969.11 gi|336252509|ref|YP_004595616.1| - 0.032 14.3 3.2 0.036 14.1 0.5 2.3 3 0 0 3 3 3 0 HemN C-terminal domain CitG PF01874.11 gi|336252510|ref|YP_004595617.1| - 5.9e-66 222.4 2.0 6.9e-66 222.2 1.4 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase DUF447 PF04289.7 gi|336252511|ref|YP_004595618.1| - 3.7e-38 130.8 0.0 5.3e-38 130.3 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF447) DUF4131 PF13567.1 gi|336252512|ref|YP_004595619.1| - 0.45 9.9 7.2 0.045 13.1 1.2 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) DUF1469 PF07332.6 gi|336252512|ref|YP_004595619.1| - 2 8.1 24.4 0.19 11.4 7.4 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1469) Ribosomal_S17e PF00833.13 gi|336252513|ref|YP_004595620.1| - 3e-14 52.8 0.0 3.6e-14 52.5 0.0 1.0 1 0 0 1 1 1 1 Ribosomal S17 DUF4019 PF13211.1 gi|336252513|ref|YP_004595620.1| - 0.044 14.0 0.0 0.058 13.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4019) DctQ PF04290.7 gi|336252514|ref|YP_004595621.1| - 0.35 10.6 7.3 0.48 10.1 5.0 1.2 1 0 0 1 1 1 0 Tripartite ATP-independent periplasmic transporters, DctQ component DUF2975 PF11188.3 gi|336252514|ref|YP_004595621.1| - 0.77 9.4 6.6 1.1 8.9 4.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2975) Cation_efflux PF01545.16 gi|336252514|ref|YP_004595621.1| - 2.9 6.8 5.2 3.8 6.4 3.6 1.1 1 0 0 1 1 1 0 Cation efflux family Semialdhyde_dh PF01118.19 gi|336252515|ref|YP_004595622.1| - 2e-35 121.7 0.0 3.4e-35 120.9 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.13 gi|336252515|ref|YP_004595622.1| - 5.4e-29 101.3 0.0 8.4e-29 100.7 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain DapB_N PF01113.15 gi|336252515|ref|YP_004595622.1| - 3e-05 23.9 0.0 5.3e-05 23.1 0.0 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus DXP_reductoisom PF02670.11 gi|336252515|ref|YP_004595622.1| - 8.9e-05 23.0 0.0 0.00016 22.1 0.0 1.4 1 0 0 1 1 1 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase Gp_dh_C PF02800.15 gi|336252515|ref|YP_004595622.1| - 0.0026 17.2 0.0 0.0055 16.1 0.0 1.5 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain GFO_IDH_MocA PF01408.17 gi|336252515|ref|YP_004595622.1| - 0.0059 17.1 0.0 0.013 16.0 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold HTH_20 PF12840.2 gi|336252516|ref|YP_004595623.1| - 3.3e-06 26.8 0.4 2.8e-05 23.8 0.3 2.2 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|336252516|ref|YP_004595623.1| - 0.074 12.7 0.0 0.16 11.6 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Usp PF00582.21 gi|336252517|ref|YP_004595624.1| - 2.2e-11 44.1 0.5 2.6e-11 43.8 0.3 1.0 1 0 0 1 1 1 1 Universal stress protein family 2-Hacid_dh_C PF02826.14 gi|336252518|ref|YP_004595625.1| - 1.4e-53 180.6 0.0 2.1e-53 180.1 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|336252518|ref|YP_004595625.1| - 2.4e-12 46.4 0.0 2.8e-12 46.2 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IlvN PF07991.7 gi|336252518|ref|YP_004595625.1| - 0.01 15.2 0.0 0.1 11.9 0.0 2.1 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, catalytic domain TrkA_N PF02254.13 gi|336252518|ref|YP_004595625.1| - 0.02 14.8 0.2 0.46 10.5 0.0 2.7 3 0 0 3 3 3 0 TrkA-N domain ThiF PF00899.16 gi|336252518|ref|YP_004595625.1| - 0.032 14.0 0.2 0.07 12.9 0.1 1.6 1 0 0 1 1 1 0 ThiF family F420_oxidored PF03807.12 gi|336252518|ref|YP_004595625.1| - 0.039 14.3 0.0 0.086 13.2 0.0 1.7 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent DUF4440 PF14534.1 gi|336252518|ref|YP_004595625.1| - 0.078 13.1 0.2 0.73 10.0 0.0 2.5 2 1 1 3 3 3 0 Domain of unknown function (DUF4440) NAD_binding_7 PF13241.1 gi|336252518|ref|YP_004595625.1| - 0.1 12.8 0.0 0.24 11.6 0.0 1.6 1 0 0 1 1 1 0 Putative NAD(P)-binding DAO PF01266.19 gi|336252519|ref|YP_004595626.1| - 1.7e-12 46.9 0.1 2.1e-05 23.6 0.0 2.2 1 1 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|336252519|ref|YP_004595626.1| - 1e-10 41.8 0.0 8.9e-10 38.7 0.0 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|336252519|ref|YP_004595626.1| - 3.8e-08 32.7 0.2 0.0014 17.7 0.1 2.1 2 0 0 2 2 2 2 FAD binding domain NAD_binding_9 PF13454.1 gi|336252519|ref|YP_004595626.1| - 7e-08 32.3 0.6 0.0009 19.0 0.0 2.5 2 0 0 2 2 2 2 FAD-NAD(P)-binding FAD_oxidored PF12831.2 gi|336252519|ref|YP_004595626.1| - 2.2e-06 27.0 0.0 4.5e-06 26.0 0.0 1.7 1 0 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|336252519|ref|YP_004595626.1| - 4.7e-06 25.3 0.6 0.00057 18.4 0.9 2.1 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_2 PF00890.19 gi|336252519|ref|YP_004595626.1| - 5.5e-05 22.1 0.5 0.00012 21.0 0.3 1.6 2 0 0 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.1 gi|336252519|ref|YP_004595626.1| - 9.3e-05 22.3 0.3 0.0003 20.7 0.2 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Trp_halogenase PF04820.9 gi|336252519|ref|YP_004595626.1| - 0.00025 19.8 0.2 0.032 12.8 0.0 2.1 2 0 0 2 2 2 2 Tryptophan halogenase GIDA PF01134.17 gi|336252519|ref|YP_004595626.1| - 0.00028 19.8 3.4 0.00042 19.2 0.1 2.3 3 0 0 3 3 3 1 Glucose inhibited division protein A Thi4 PF01946.12 gi|336252519|ref|YP_004595626.1| - 0.004 16.2 0.0 0.0076 15.3 0.0 1.4 1 0 0 1 1 1 1 Thi4 family Lycopene_cycl PF05834.7 gi|336252519|ref|YP_004595626.1| - 0.017 14.0 0.1 0.18 10.7 0.1 2.0 2 0 0 2 2 2 0 Lycopene cyclase protein Pyr_redox PF00070.22 gi|336252519|ref|YP_004595626.1| - 0.028 14.8 0.3 1.5 9.3 0.6 2.4 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase HTH_20 PF12840.2 gi|336252521|ref|YP_004595628.1| - 2.5e-12 46.4 0.2 4.9e-12 45.4 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|336252521|ref|YP_004595628.1| - 0.00018 21.0 0.1 0.00036 20.0 0.1 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|336252521|ref|YP_004595628.1| - 0.0006 19.4 0.1 0.0012 18.4 0.1 1.6 1 1 0 1 1 1 1 MarR family TrmB PF01978.14 gi|336252521|ref|YP_004595628.1| - 0.003 17.2 0.0 0.0056 16.3 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|336252521|ref|YP_004595628.1| - 0.0054 16.3 0.1 0.01 15.4 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_7 PF02796.10 gi|336252521|ref|YP_004595628.1| - 0.013 15.3 0.0 0.028 14.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_11 PF08279.7 gi|336252521|ref|YP_004595628.1| - 0.017 14.7 0.1 0.032 13.8 0.1 1.4 1 0 0 1 1 1 0 HTH domain FUR PF01475.14 gi|336252521|ref|YP_004595628.1| - 0.055 13.4 0.1 0.085 12.7 0.0 1.5 1 1 0 1 1 1 0 Ferric uptake regulator family PadR PF03551.9 gi|336252521|ref|YP_004595628.1| - 0.1 12.3 0.0 0.16 11.7 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family DUF373 PF04123.8 gi|336252522|ref|YP_004595629.1| - 0.024 13.6 3.7 0.03 13.3 2.6 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF373) DUF3938 PF13074.1 gi|336252522|ref|YP_004595629.1| - 0.03 14.1 0.1 0.04 13.7 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3938) Rax2 PF12768.2 gi|336252522|ref|YP_004595629.1| - 0.068 12.3 0.3 0.12 11.6 0.2 1.3 1 0 0 1 1 1 0 Cortical protein marker for cell polarity ABC2_membrane PF01061.19 gi|336252522|ref|YP_004595629.1| - 0.26 10.4 7.0 0.31 10.1 4.8 1.0 1 0 0 1 1 1 0 ABC-2 type transporter DUF981 PF06168.6 gi|336252522|ref|YP_004595629.1| - 0.34 10.6 8.2 0.7 9.6 5.6 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF981) MARVEL PF01284.18 gi|336252522|ref|YP_004595629.1| - 0.6 9.9 8.8 0.055 13.2 2.1 1.8 1 1 1 2 2 2 0 Membrane-associating domain DUF973 PF06157.6 gi|336252522|ref|YP_004595629.1| - 1.4 7.8 10.3 1.6 7.6 7.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF973) Tic20 PF09685.5 gi|336252522|ref|YP_004595629.1| - 2.1 8.3 6.1 2.8 7.9 4.2 1.1 1 0 0 1 1 1 0 Tic20-like protein Cu-oxidase_2 PF07731.9 gi|336252523|ref|YP_004595630.1| - 2.2e-29 101.7 7.8 2.4e-17 62.7 0.1 3.1 2 1 0 2 2 2 2 Multicopper oxidase Cu-oxidase_3 PF07732.10 gi|336252523|ref|YP_004595630.1| - 1.8e-23 82.4 2.5 7.3e-17 61.1 0.2 2.4 2 1 0 2 2 2 2 Multicopper oxidase Cu-oxidase PF00394.17 gi|336252523|ref|YP_004595630.1| - 3.2e-11 43.3 0.0 7.9e-11 42.0 0.0 1.7 2 0 0 2 2 2 1 Multicopper oxidase Cupredoxin_1 PF13473.1 gi|336252523|ref|YP_004595630.1| - 0.013 15.3 0.0 0.99 9.3 0.0 2.7 2 1 0 2 2 2 0 Cupredoxin-like domain Pyr_redox_2 PF07992.9 gi|336252524|ref|YP_004595631.1| - 2.9e-41 141.5 8.2 2e-40 138.8 5.7 2.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|336252524|ref|YP_004595631.1| - 1e-36 125.2 0.3 2.4e-36 124.1 0.1 1.8 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.22 gi|336252524|ref|YP_004595631.1| - 3.9e-25 88.0 1.6 6.6e-21 74.4 0.0 3.5 4 0 0 4 4 3 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|336252524|ref|YP_004595631.1| - 2.5e-11 43.0 1.4 3.7e-08 32.6 0.5 2.4 2 0 0 2 2 2 2 Glucose inhibited division protein A Pyr_redox_3 PF13738.1 gi|336252524|ref|YP_004595631.1| - 1.2e-09 38.5 0.1 2.1e-09 37.7 0.1 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|336252524|ref|YP_004595631.1| - 3.9e-09 35.8 6.4 1.9e-06 27.0 0.3 3.3 3 0 0 3 3 3 2 FAD binding domain NAD_binding_8 PF13450.1 gi|336252524|ref|YP_004595631.1| - 6.9e-08 32.4 1.0 0.0023 17.9 0.1 2.6 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|336252524|ref|YP_004595631.1| - 1.1e-07 30.7 3.7 1e-05 24.2 0.1 2.7 3 0 0 3 3 3 2 HI0933-like protein FAD_oxidored PF12831.2 gi|336252524|ref|YP_004595631.1| - 1.2e-06 27.9 0.4 1.2e-06 27.9 0.3 1.7 2 0 0 2 2 2 1 FAD dependent oxidoreductase Thi4 PF01946.12 gi|336252524|ref|YP_004595631.1| - 4.3e-06 25.9 2.3 0.015 14.4 0.2 3.0 3 0 0 3 3 3 2 Thi4 family DAO PF01266.19 gi|336252524|ref|YP_004595631.1| - 1.6e-05 23.9 15.9 0.0019 17.1 0.4 3.9 4 1 0 5 5 5 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|336252524|ref|YP_004595631.1| - 2.1e-05 23.7 2.3 0.064 12.3 0.1 2.3 2 0 0 2 2 2 2 FAD binding domain 3HCDH_N PF02737.13 gi|336252524|ref|YP_004595631.1| - 4.3e-05 23.2 0.3 0.00069 19.3 0.0 2.4 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.16 gi|336252524|ref|YP_004595631.1| - 5.3e-05 22.8 0.4 0.023 14.2 0.0 2.5 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain UDPG_MGDP_dh_N PF03721.9 gi|336252524|ref|YP_004595631.1| - 9.9e-05 21.7 2.8 0.00065 19.1 0.2 2.4 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain TrkA_N PF02254.13 gi|336252524|ref|YP_004595631.1| - 0.00055 19.9 0.8 0.29 11.1 0.0 2.9 3 0 0 3 3 3 1 TrkA-N domain NAD_binding_7 PF13241.1 gi|336252524|ref|YP_004595631.1| - 0.00059 20.0 0.1 1.1 9.5 0.0 2.6 2 0 0 2 2 2 2 Putative NAD(P)-binding XdhC_C PF13478.1 gi|336252524|ref|YP_004595631.1| - 0.00061 20.1 0.1 0.05 13.9 0.0 3.3 3 1 0 3 3 3 1 XdhC Rossmann domain Lycopene_cycl PF05834.7 gi|336252524|ref|YP_004595631.1| - 0.00069 18.6 1.9 0.14 11.0 0.2 2.4 2 0 0 2 2 2 2 Lycopene cyclase protein Trp_halogenase PF04820.9 gi|336252524|ref|YP_004595631.1| - 0.0054 15.4 1.5 0.024 13.2 0.1 2.1 2 0 0 2 2 2 1 Tryptophan halogenase 2-Hacid_dh_C PF02826.14 gi|336252524|ref|YP_004595631.1| - 0.023 13.8 0.2 0.78 8.8 0.0 2.8 3 0 0 3 3 3 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-oxoacid_dh PF00198.18 gi|336252525|ref|YP_004595632.1| - 4.2e-89 297.7 0.0 5.6e-89 297.3 0.0 1.1 1 0 0 1 1 1 1 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Biotin_lipoyl PF00364.17 gi|336252525|ref|YP_004595632.1| - 2.5e-24 84.7 2.0 5.1e-24 83.7 1.4 1.6 1 0 0 1 1 1 1 Biotin-requiring enzyme E3_binding PF02817.12 gi|336252525|ref|YP_004595632.1| - 3.4e-24 84.1 3.4 1.7e-17 62.7 0.2 2.9 2 0 0 2 2 2 2 e3 binding domain Biotin_lipoyl_2 PF13533.1 gi|336252525|ref|YP_004595632.1| - 6.1e-06 25.8 3.0 0.0039 16.8 0.6 2.8 1 1 1 2 2 2 2 Biotin-lipoyl like GCV_H PF01597.14 gi|336252525|ref|YP_004595632.1| - 1.2e-05 24.9 1.0 3e-05 23.6 0.7 1.7 1 0 0 1 1 1 1 Glycine cleavage H-protein HlyD_2 PF12700.2 gi|336252525|ref|YP_004595632.1| - 0.00016 20.9 1.3 0.45 9.6 0.0 2.7 2 1 1 3 3 3 2 HlyD family secretion protein RnfC_N PF13375.1 gi|336252525|ref|YP_004595632.1| - 0.0016 18.1 0.5 0.0036 17.0 0.3 1.6 1 0 0 1 1 1 1 RnfC Barrel sandwich hybrid domain HlyD_3 PF13437.1 gi|336252525|ref|YP_004595632.1| - 0.017 15.4 1.6 0.18 12.1 0.2 2.6 1 1 1 2 2 2 0 HlyD family secretion protein Transket_pyr PF02779.19 gi|336252526|ref|YP_004595633.1| - 1.7e-52 177.5 0.0 2.1e-52 177.1 0.0 1.1 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.15 gi|336252526|ref|YP_004595633.1| - 4.8e-35 120.2 0.0 9.9e-35 119.1 0.0 1.6 1 0 0 1 1 1 1 Transketolase, C-terminal domain E1_dh PF00676.15 gi|336252527|ref|YP_004595634.1| - 7.1e-91 304.0 0.0 8.3e-91 303.8 0.0 1.0 1 0 0 1 1 1 1 Dehydrogenase E1 component DXP_synthase_N PF13292.1 gi|336252527|ref|YP_004595634.1| - 5.9e-09 35.2 0.0 9.1e-09 34.6 0.0 1.2 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase Transketolase_N PF00456.16 gi|336252527|ref|YP_004595634.1| - 7.4e-05 21.7 0.0 0.00014 20.7 0.0 1.5 1 1 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain TPP_enzyme_C PF02775.16 gi|336252527|ref|YP_004595634.1| - 0.00037 20.1 0.3 0.0013 18.3 0.0 2.0 2 1 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HTH_41 PF14502.1 gi|336252527|ref|YP_004595634.1| - 0.036 13.6 0.0 0.092 12.3 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Band_7 PF01145.20 gi|336252528|ref|YP_004595635.1| - 0.0001 22.2 0.0 0.00012 22.0 0.0 1.1 1 0 0 1 1 1 1 SPFH domain / Band 7 family Radical_SAM PF04055.16 gi|336252529|ref|YP_004595636.1| - 1.4e-12 48.1 0.2 5.1e-12 46.2 0.1 1.9 2 0 0 2 2 2 1 Radical SAM superfamily B12-binding PF02310.14 gi|336252529|ref|YP_004595636.1| - 0.022 14.6 0.2 3.1 7.6 0.0 3.0 2 2 1 3 3 3 0 B12 binding domain MatE PF01554.13 gi|336252530|ref|YP_004595637.1| - 8.6e-48 162.0 26.0 1e-25 90.2 6.9 2.4 2 0 0 2 2 2 2 MatE Polysacc_synt_C PF14667.1 gi|336252530|ref|YP_004595637.1| - 3.5e-09 36.6 3.3 3.5e-09 36.6 2.3 4.5 4 2 0 4 4 4 2 Polysaccharide biosynthesis C-terminal domain DUF2456 PF10445.4 gi|336252530|ref|YP_004595637.1| - 0.051 13.5 2.5 0.52 10.2 0.1 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2456) Methyltransf_11 PF08241.7 gi|336252531|ref|YP_004595638.1| - 1.4e-26 92.8 0.0 2.1e-26 92.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|336252531|ref|YP_004595638.1| - 6.5e-24 84.2 0.0 8.1e-24 83.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|336252531|ref|YP_004595638.1| - 1.2e-23 83.6 0.0 1.5e-23 83.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|336252531|ref|YP_004595638.1| - 6e-19 68.0 0.0 8.9e-19 67.5 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_18 PF12847.2 gi|336252531|ref|YP_004595638.1| - 8.7e-19 68.1 0.0 1.5e-18 67.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|336252531|ref|YP_004595638.1| - 2.3e-16 60.0 0.0 3.6e-16 59.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|336252531|ref|YP_004595638.1| - 2.4e-15 56.5 1.2 1.3e-14 54.2 0.6 2.2 2 1 0 2 2 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|336252531|ref|YP_004595638.1| - 6.7e-14 52.0 0.0 1.1e-13 51.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|336252531|ref|YP_004595638.1| - 8.1e-07 28.5 0.0 1.9e-06 27.3 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_29 PF03141.11 gi|336252531|ref|YP_004595638.1| - 1e-05 24.0 0.0 1.2e-05 23.8 0.0 1.0 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase PrmA PF06325.8 gi|336252531|ref|YP_004595638.1| - 4e-05 22.8 0.0 5.3e-05 22.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) PCMT PF01135.14 gi|336252531|ref|YP_004595638.1| - 5e-05 22.9 0.0 8.2e-05 22.2 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) TehB PF03848.9 gi|336252531|ref|YP_004595638.1| - 5.9e-05 22.3 0.0 8.3e-05 21.8 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_9 PF08003.6 gi|336252531|ref|YP_004595638.1| - 7.5e-05 21.5 0.0 8.5e-05 21.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_32 PF13679.1 gi|336252531|ref|YP_004595638.1| - 0.00032 20.3 0.0 0.00044 19.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|336252531|ref|YP_004595638.1| - 0.00061 19.4 0.0 0.00091 18.8 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 NodS PF05401.6 gi|336252531|ref|YP_004595638.1| - 0.0012 18.3 0.0 0.0015 17.9 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) TPMT PF05724.6 gi|336252531|ref|YP_004595638.1| - 0.0013 18.2 0.0 0.0018 17.7 0.0 1.3 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) MetW PF07021.7 gi|336252531|ref|YP_004595638.1| - 0.0023 17.3 0.0 0.0037 16.6 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW GidB PF02527.10 gi|336252531|ref|YP_004595638.1| - 0.0025 16.9 0.0 0.0052 15.9 0.0 1.4 1 1 0 1 1 1 1 rRNA small subunit methyltransferase G DREV PF05219.7 gi|336252531|ref|YP_004595638.1| - 0.027 13.3 0.0 0.053 12.3 0.0 1.5 1 1 0 1 1 1 0 DREV methyltransferase Mur_ligase PF01225.20 gi|336252531|ref|YP_004595638.1| - 0.036 14.1 0.0 0.064 13.3 0.0 1.4 1 0 0 1 1 1 0 Mur ligase family, catalytic domain Methyltransf_16 PF10294.4 gi|336252531|ref|YP_004595638.1| - 0.038 13.4 0.0 0.053 12.9 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase CMAS PF02353.15 gi|336252531|ref|YP_004595638.1| - 0.049 12.7 0.0 0.062 12.3 0.0 1.3 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase RrnaAD PF00398.15 gi|336252531|ref|YP_004595638.1| - 0.054 12.5 0.0 0.08 11.9 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase AdoMet_MTase PF07757.8 gi|336252531|ref|YP_004595638.1| - 0.11 12.5 0.0 0.2 11.7 0.0 1.4 1 0 0 1 1 1 0 Predicted AdoMet-dependent methyltransferase Methyltransf_15 PF09445.5 gi|336252531|ref|YP_004595638.1| - 0.14 11.7 0.0 0.17 11.4 0.0 1.1 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase bPH_2 PF03703.9 gi|336252532|ref|YP_004595639.1| - 2.1e-15 56.4 0.0 4.6e-15 55.3 0.0 1.5 1 0 0 1 1 1 1 Bacterial PH domain DsbB PF02600.11 gi|336252532|ref|YP_004595639.1| - 0.012 15.4 0.3 0.016 15.0 0.2 1.1 1 0 0 1 1 1 0 Disulfide bond formation protein DsbB IncA PF04156.9 gi|336252532|ref|YP_004595639.1| - 0.036 13.6 0.0 0.04 13.5 0.0 1.2 1 0 0 1 1 1 0 IncA protein DEAD PF00270.24 gi|336252533|ref|YP_004595640.1| - 1.5e-27 96.1 0.0 5.4e-27 94.3 0.0 1.9 2 0 0 2 2 2 1 DEAD/DEAH box helicase Sec63 PF02889.11 gi|336252533|ref|YP_004595640.1| - 1.6e-16 60.3 0.0 2.3e-16 59.8 0.0 1.2 1 0 0 1 1 1 1 Sec63 Brl domain Helicase_C PF00271.26 gi|336252533|ref|YP_004595640.1| - 4.1e-10 39.3 0.0 1.1e-09 38.0 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|336252533|ref|YP_004595640.1| - 1.7e-08 34.5 0.0 3.1e-08 33.6 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HHH_5 PF14520.1 gi|336252533|ref|YP_004595640.1| - 3.4e-07 30.3 0.8 1.4e-06 28.3 0.5 2.2 1 0 0 1 1 1 1 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.4 gi|336252533|ref|YP_004595640.1| - 0.026 14.0 0.0 0.075 12.5 0.0 1.7 1 0 0 1 1 1 0 Fingers domain of DNA polymerase lambda DUF1253 PF06862.7 gi|336252533|ref|YP_004595640.1| - 0.073 11.4 0.0 0.11 10.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1253) IstB_IS21 PF01695.12 gi|336252533|ref|YP_004595640.1| - 0.11 11.9 0.0 2.8 7.3 0.0 2.8 3 0 0 3 3 3 0 IstB-like ATP binding protein HAD_2 PF13419.1 gi|336252534|ref|YP_004595641.1| - 8.1e-27 94.5 0.7 9.7e-27 94.3 0.5 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|336252534|ref|YP_004595641.1| - 7.6e-14 52.6 0.1 2.5e-12 47.6 0.1 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|336252534|ref|YP_004595641.1| - 2.7e-10 39.8 0.2 7.3e-10 38.4 0.1 1.8 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.2 gi|336252534|ref|YP_004595641.1| - 1.1e-06 29.0 0.1 1.2e-06 28.8 0.1 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase NT5C PF06941.7 gi|336252534|ref|YP_004595641.1| - 0.05 13.0 0.1 0.086 12.3 0.1 1.4 1 0 0 1 1 1 0 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) Methyltransf_23 PF13489.1 gi|336252535|ref|YP_004595642.1| - 2.8e-11 43.4 0.1 3.5e-11 43.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|336252535|ref|YP_004595642.1| - 3.2e-09 37.1 0.1 5e-09 36.5 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|336252535|ref|YP_004595642.1| - 1.2e-06 28.8 0.1 2.1e-06 28.0 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|336252535|ref|YP_004595642.1| - 1.3e-05 24.7 0.0 2.4e-05 23.7 0.0 1.4 1 1 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_18 PF12847.2 gi|336252535|ref|YP_004595642.1| - 2.9e-05 24.6 0.2 4.6e-05 23.9 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_9 PF08003.6 gi|336252535|ref|YP_004595642.1| - 0.00013 20.8 0.0 0.00016 20.4 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_12 PF08242.7 gi|336252535|ref|YP_004595642.1| - 0.00031 21.1 0.7 0.00056 20.3 0.1 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|336252535|ref|YP_004595642.1| - 0.00058 19.8 0.1 0.00097 19.1 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|336252535|ref|YP_004595642.1| - 0.0008 19.0 0.0 0.00088 18.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain DUF123 PF01986.11 gi|336252535|ref|YP_004595642.1| - 0.04 14.0 0.5 0.18 11.9 0.1 1.9 1 1 1 2 2 2 0 Domain of unknown function DUF123 TehB PF03848.9 gi|336252535|ref|YP_004595642.1| - 0.092 11.9 0.0 0.2 10.7 0.0 1.6 2 0 0 2 2 2 0 Tellurite resistance protein TehB CSD PF00313.17 gi|336252536|ref|YP_004595643.1| - 6.2e-20 70.7 0.2 6.8e-20 70.6 0.2 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain S1-like PF14444.1 gi|336252536|ref|YP_004595643.1| - 0.032 13.9 0.7 0.044 13.5 0.5 1.4 1 1 0 1 1 1 0 S1-like OB_RNB PF08206.6 gi|336252536|ref|YP_004595643.1| - 0.034 13.6 2.6 0.045 13.2 1.8 1.3 1 0 0 1 1 1 0 Ribonuclease B OB domain DUF4066 PF13278.1 gi|336252537|ref|YP_004595644.1| - 4.8e-38 130.0 0.4 5.6e-38 129.8 0.2 1.0 1 0 0 1 1 1 1 Putative amidotransferase DJ-1_PfpI PF01965.19 gi|336252537|ref|YP_004595644.1| - 7.1e-17 61.2 0.4 1e-16 60.7 0.2 1.3 1 0 0 1 1 1 1 DJ-1/PfpI family GATase_3 PF07685.9 gi|336252537|ref|YP_004595644.1| - 0.00019 21.0 0.0 0.011 15.2 0.0 2.2 2 0 0 2 2 2 2 CobB/CobQ-like glutamine amidotransferase domain DUF1510 PF07423.6 gi|336252538|ref|YP_004595645.1| - 1.5 8.1 14.7 16 4.7 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1510) HTH_27 PF13463.1 gi|336252539|ref|YP_004595646.1| - 0.052 13.8 0.0 0.11 12.7 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF3450 PF11932.3 gi|336252540|ref|YP_004595647.1| - 0.03 13.5 0.3 0.039 13.2 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) Fmp27_WPPW PF10359.4 gi|336252540|ref|YP_004595647.1| - 0.044 12.1 0.7 0.054 11.9 0.5 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain DUF724 PF05266.9 gi|336252540|ref|YP_004595647.1| - 0.29 10.7 1.4 0.41 10.2 1.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF724) MazG PF03819.12 gi|336252541|ref|YP_004595648.1| - 1.1e-07 31.6 0.4 1.7e-07 31.0 0.3 1.2 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain EntA_Immun PF08951.5 gi|336252541|ref|YP_004595648.1| - 0.0043 17.1 0.1 0.0062 16.6 0.1 1.3 1 0 0 1 1 1 1 Enterocin A Immunity PRA-PH PF01503.12 gi|336252541|ref|YP_004595648.1| - 0.058 13.6 0.6 0.076 13.3 0.4 1.2 1 0 0 1 1 1 0 Phosphoribosyl-ATP pyrophosphohydrolase HD PF01966.17 gi|336252542|ref|YP_004595649.1| - 3e-11 43.4 0.8 7.1e-11 42.1 0.5 1.8 1 0 0 1 1 1 1 HD domain Clp_N PF02861.15 gi|336252542|ref|YP_004595649.1| - 0.0019 18.0 0.1 0.0077 16.1 0.1 2.1 1 0 0 1 1 1 1 Clp amino terminal domain AAA_33 PF13671.1 gi|336252543|ref|YP_004595650.1| - 8.6e-21 74.3 0.0 1.1e-20 73.9 0.0 1.1 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|336252543|ref|YP_004595650.1| - 1.8e-06 27.1 0.1 5e-06 25.7 0.1 1.7 1 1 0 1 1 1 1 Zeta toxin KTI12 PF08433.5 gi|336252543|ref|YP_004595650.1| - 8.8e-05 21.8 0.0 9.8e-05 21.6 0.0 1.1 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_17 PF13207.1 gi|336252543|ref|YP_004595650.1| - 0.00063 20.5 0.0 0.0011 19.7 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|336252543|ref|YP_004595650.1| - 0.0011 19.0 0.0 0.0024 18.0 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|336252543|ref|YP_004595650.1| - 0.0017 18.6 0.1 0.069 13.4 0.0 2.7 1 1 1 2 2 2 1 AAA domain DUF3275 PF11679.3 gi|336252543|ref|YP_004595650.1| - 0.005 16.5 0.0 0.0072 15.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3275) 6PF2K PF01591.13 gi|336252543|ref|YP_004595650.1| - 0.0056 15.7 1.0 0.51 9.3 0.2 2.3 1 1 0 2 2 2 2 6-phosphofructo-2-kinase Latexin PF06907.7 gi|336252543|ref|YP_004595650.1| - 0.047 12.8 0.0 0.058 12.5 0.0 1.1 1 0 0 1 1 1 0 Latexin CPT PF07931.7 gi|336252543|ref|YP_004595650.1| - 0.06 12.9 0.0 0.075 12.6 0.0 1.2 1 0 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein Phosphonate-bd PF12974.2 gi|336252544|ref|YP_004595651.1| - 1.9e-48 165.0 0.1 2.2e-48 164.7 0.1 1.1 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein NMT1 PF09084.6 gi|336252544|ref|YP_004595651.1| - 0.09 12.3 0.1 0.25 10.8 0.0 1.7 2 1 0 2 2 2 0 NMT1/THI5 like ABC_tran PF00005.22 gi|336252545|ref|YP_004595652.1| - 7.5e-33 113.7 0.1 1e-32 113.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|336252545|ref|YP_004595652.1| - 4.7e-09 36.6 0.0 0.00041 20.4 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|336252545|ref|YP_004595652.1| - 2.5e-05 23.5 0.0 0.00042 19.4 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain SMC_N PF02463.14 gi|336252545|ref|YP_004595652.1| - 4e-05 22.9 0.1 0.002 17.4 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|336252545|ref|YP_004595652.1| - 7.1e-05 22.8 0.7 0.00037 20.5 0.5 1.9 1 1 0 1 1 1 1 AAA ATPase domain DUF258 PF03193.11 gi|336252545|ref|YP_004595652.1| - 8e-05 21.8 0.0 0.00012 21.2 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|336252545|ref|YP_004595652.1| - 0.00038 19.9 0.0 0.00076 18.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.1 gi|336252545|ref|YP_004595652.1| - 0.0017 17.9 0.2 0.0051 16.4 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|336252545|ref|YP_004595652.1| - 0.0023 17.3 0.0 0.018 14.4 0.0 2.1 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.12 gi|336252545|ref|YP_004595652.1| - 0.0097 15.3 0.0 0.25 10.7 0.0 2.1 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_33 PF13671.1 gi|336252545|ref|YP_004595652.1| - 0.018 14.8 0.2 0.042 13.7 0.1 1.6 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|336252545|ref|YP_004595652.1| - 0.019 14.9 0.0 0.052 13.4 0.0 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_5 PF07728.9 gi|336252545|ref|YP_004595652.1| - 0.02 14.5 0.3 0.12 12.1 0.0 2.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) SbcCD_C PF13558.1 gi|336252545|ref|YP_004595652.1| - 0.021 14.7 0.4 0.22 11.4 0.2 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_22 PF13401.1 gi|336252545|ref|YP_004595652.1| - 0.036 14.2 0.2 0.085 12.9 0.2 1.9 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|336252545|ref|YP_004595652.1| - 0.061 13.6 0.0 0.1 12.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|336252545|ref|YP_004595652.1| - 0.082 13.2 0.0 0.17 12.1 0.0 1.6 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.7 gi|336252545|ref|YP_004595652.1| - 0.098 11.7 0.0 0.2 10.7 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_13 PF13166.1 gi|336252545|ref|YP_004595652.1| - 0.19 10.1 0.0 11 4.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain MMPL PF03176.10 gi|336252546|ref|YP_004595653.1| - 0.0014 17.3 0.5 0.0024 16.6 0.4 1.4 1 0 0 1 1 1 1 MMPL family SUR7 PF06687.7 gi|336252546|ref|YP_004595653.1| - 2 7.8 8.1 0.17 11.4 0.4 2.6 3 1 0 3 3 3 0 SUR7/PalI family DUF91 PF01939.11 gi|336252547|ref|YP_004595654.1| - 8.3e-06 25.1 0.0 1.1e-05 24.7 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF91 zf-C4_Topoisom PF01396.14 gi|336252547|ref|YP_004595654.1| - 5.5e-05 22.5 4.4 0.013 14.9 0.4 2.7 2 0 0 2 2 2 2 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_4 PF13717.1 gi|336252547|ref|YP_004595654.1| - 0.13 11.9 3.0 0.19 11.4 0.2 2.5 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|336252547|ref|YP_004595654.1| - 0.51 9.9 5.3 0.24 11.0 0.3 2.5 3 0 0 3 3 3 0 zinc-ribbon domain tRNA_int_endo PF01974.12 gi|336252548|ref|YP_004595655.1| - 1.6e-34 117.5 0.0 2.6e-25 88.0 0.0 2.6 2 1 0 2 2 2 2 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.9 gi|336252548|ref|YP_004595655.1| - 9.9e-26 89.0 0.5 1.8e-11 43.3 0.0 2.8 3 0 0 3 3 3 2 tRNA intron endonuclease, N-terminal domain tRNA_int_end_N2 PF12928.2 gi|336252548|ref|YP_004595655.1| - 0.0052 16.2 0.0 2.1 7.8 0.0 2.5 2 0 0 2 2 2 2 tRNA-splicing endonuclease subunit sen54 N-term Tubulin PF00091.20 gi|336252549|ref|YP_004595656.1| - 3.6e-11 43.3 0.0 2.8e-10 40.3 0.0 2.3 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain DUF4129 PF13559.1 gi|336252550|ref|YP_004595657.1| - 0.00012 21.9 2.6 0.00012 21.9 1.8 2.9 3 1 0 3 3 3 1 Domain of unknown function (DUF4129) DUF4198 PF10670.4 gi|336252550|ref|YP_004595657.1| - 0.00093 19.2 12.1 0.08 12.9 1.2 3.4 3 0 0 3 3 3 3 Domain of unknown function (DUF4198) DUF4480 PF13715.1 gi|336252550|ref|YP_004595657.1| - 0.0061 16.5 7.7 1.7 8.7 0.2 3.9 3 1 0 3 3 3 2 Domain of unknown function (DUF4480) DUF58 PF01882.13 gi|336252552|ref|YP_004595659.1| - 5.4e-15 55.2 0.0 1.4e-14 53.9 0.0 1.8 1 0 0 1 1 1 1 Protein of unknown function DUF58 DUF11 PF01345.13 gi|336252552|ref|YP_004595659.1| - 1.6e-07 31.2 0.3 4.8e-07 29.7 0.2 1.9 1 0 0 1 1 1 1 Domain of unknown function DUF11 TRAP_beta PF05753.9 gi|336252552|ref|YP_004595659.1| - 0.036 13.2 0.0 0.064 12.4 0.0 1.3 1 0 0 1 1 1 0 Translocon-associated protein beta (TRAPB) AAA_3 PF07726.6 gi|336252554|ref|YP_004595661.1| - 1.1e-64 215.8 0.1 1.9e-64 215.1 0.1 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|336252554|ref|YP_004595661.1| - 2.1e-16 59.9 0.0 4.7e-16 58.7 0.0 1.6 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|336252554|ref|YP_004595661.1| - 9.6e-07 29.0 0.0 2.5e-06 27.7 0.0 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|336252554|ref|YP_004595661.1| - 1.8e-06 27.5 0.0 9.8e-06 25.1 0.0 2.0 1 1 0 1 1 1 1 Sigma-54 interaction domain MCM PF00493.18 gi|336252554|ref|YP_004595661.1| - 3.2e-06 26.1 0.4 0.0025 16.6 0.0 2.2 2 0 0 2 2 2 2 MCM2/3/5 family RuvB_N PF05496.7 gi|336252554|ref|YP_004595661.1| - 0.00058 18.9 0.3 0.007 15.4 0.2 2.4 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_19 PF13245.1 gi|336252554|ref|YP_004595661.1| - 0.017 14.8 0.3 0.064 13.0 0.2 2.0 1 0 0 1 1 1 0 Part of AAA domain Mg_chelatase PF01078.16 gi|336252554|ref|YP_004595661.1| - 0.019 14.1 0.1 2.1 7.4 0.0 2.2 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_2 PF07724.9 gi|336252554|ref|YP_004595661.1| - 0.027 14.3 0.0 0.049 13.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) tRNA-synt_1b PF00579.20 gi|336252555|ref|YP_004595662.1| - 5e-44 150.5 0.0 2.1e-26 92.7 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (W and Y) CAML PF14963.1 gi|336252556|ref|YP_004595663.1| - 0.33 10.2 0.1 0.33 10.2 0.0 2.6 2 1 0 2 2 2 0 Calcium signal-modulating cyclophilin ligand tRNA-synt_2d PF01409.15 gi|336252557|ref|YP_004595664.1| - 2.1e-80 269.5 0.0 2.6e-80 269.1 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) HTH_27 PF13463.1 gi|336252557|ref|YP_004595664.1| - 0.00024 21.3 1.4 0.0058 16.9 0.0 2.9 3 0 0 3 3 3 1 Winged helix DNA-binding domain tRNA-synt_2 PF00152.15 gi|336252557|ref|YP_004595664.1| - 0.00027 19.8 1.4 0.15 10.7 0.1 3.2 3 1 0 3 3 3 2 tRNA synthetases class II (D, K and N) HTH_24 PF13412.1 gi|336252557|ref|YP_004595664.1| - 0.0048 16.2 0.0 0.018 14.4 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|336252557|ref|YP_004595664.1| - 0.0055 16.3 0.0 0.013 15.1 0.0 1.6 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|336252557|ref|YP_004595664.1| - 0.0082 15.7 0.3 0.025 14.2 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.5 gi|336252557|ref|YP_004595664.1| - 0.0095 15.5 0.0 0.028 14.0 0.0 1.9 1 0 0 1 1 1 1 IclR helix-turn-helix domain tRNA-synt_2b PF00587.20 gi|336252557|ref|YP_004595664.1| - 0.027 14.0 0.0 0.051 13.1 0.0 1.5 1 0 0 1 1 1 0 tRNA synthetase class II core domain (G, H, P, S and T) TrmB PF01978.14 gi|336252557|ref|YP_004595664.1| - 0.041 13.5 0.1 0.79 9.4 0.0 2.6 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB RPA_C PF08784.6 gi|336252557|ref|YP_004595664.1| - 0.07 13.5 0.0 0.22 11.9 0.0 1.8 1 0 0 1 1 1 0 Replication protein A C terminal Rrf2 PF02082.15 gi|336252557|ref|YP_004595664.1| - 0.079 13.0 0.0 0.2 11.8 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator B5 PF03484.10 gi|336252558|ref|YP_004595665.1| - 2.1e-17 62.6 0.7 5.7e-16 58.1 0.2 2.9 3 0 0 3 3 3 1 tRNA synthetase B5 domain B3_4 PF03483.12 gi|336252558|ref|YP_004595665.1| - 3.5e-13 49.4 0.0 5.6e-13 48.7 0.0 1.3 1 0 0 1 1 1 1 B3/4 domain tRNA-synt_2d PF01409.15 gi|336252558|ref|YP_004595665.1| - 1.8e-05 24.0 0.0 2.9e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) PepSY PF03413.14 gi|336252558|ref|YP_004595665.1| - 0.078 13.6 0.1 0.24 12.0 0.1 1.8 1 0 0 1 1 1 0 Peptidase propeptide and YPEB domain SymE_toxin PF08845.5 gi|336252559|ref|YP_004595666.1| - 0.00029 20.6 0.0 0.00031 20.5 0.0 1.1 1 0 0 1 1 1 1 Toxin SymE, type I toxin-antitoxin system Antitoxin-MazE PF04014.13 gi|336252559|ref|YP_004595666.1| - 0.014 15.0 0.3 0.023 14.4 0.2 1.3 1 0 0 1 1 1 0 Antidote-toxin recognition MazE MC1 PF05854.6 gi|336252560|ref|YP_004595667.1| - 4.9e-48 161.0 0.3 5.6e-48 160.8 0.2 1.0 1 0 0 1 1 1 1 Non-histone chromosomal protein MC1 PepSY_2 PF13670.1 gi|336252560|ref|YP_004595667.1| - 0.093 12.6 0.5 4.2 7.3 0.1 2.2 1 1 1 2 2 2 0 Peptidase propeptide and YPEB domain MFS_1 PF07690.11 gi|336252562|ref|YP_004595669.1| - 7.8e-32 110.3 41.0 7.8e-32 110.3 28.4 1.4 2 0 0 2 2 2 1 Major Facilitator Superfamily Bac_rhodopsin PF01036.13 gi|336252563|ref|YP_004595670.1| - 9.6e-25 87.1 24.5 1.1e-24 86.9 17.0 1.0 1 0 0 1 1 1 1 Bacteriorhodopsin-like protein PetG PF02529.10 gi|336252563|ref|YP_004595670.1| - 3.3 7.2 10.8 0.27 10.8 1.3 2.8 2 0 0 2 2 2 0 Cytochrome B6-F complex subunit 5 Cytochrom_B_C PF00032.12 gi|336252563|ref|YP_004595670.1| - 3.4 7.9 6.1 3.5 7.9 0.5 2.7 1 1 0 2 2 2 0 Cytochrome b(C-terminal)/b6/petD MCPsignal PF00015.16 gi|336252564|ref|YP_004595671.1| - 7.1e-46 156.4 62.3 2.4e-43 148.1 23.9 3.4 2 1 1 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.20 gi|336252564|ref|YP_004595671.1| - 3.2e-13 49.6 4.9 1.5e-09 37.8 0.3 6.3 5 1 0 6 6 4 2 HAMP domain CENP-Q PF13094.1 gi|336252564|ref|YP_004595671.1| - 9.9e-05 22.4 28.0 0.025 14.6 7.6 3.2 2 1 1 3 3 3 2 CENP-Q, a CENPA-CAD centromere complex subunit Spc7 PF08317.6 gi|336252564|ref|YP_004595671.1| - 0.00014 20.6 30.7 0.046 12.3 2.5 3.9 2 1 2 4 4 4 3 Spc7 kinetochore protein TctB PF07331.6 gi|336252564|ref|YP_004595671.1| - 0.00058 19.5 1.9 0.00096 18.8 1.3 1.2 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctB family Hormone_1 PF00103.15 gi|336252564|ref|YP_004595671.1| - 0.0006 19.2 3.0 0.83 8.9 0.0 4.4 2 1 2 5 5 5 1 Somatotropin hormone family DUF1664 PF07889.7 gi|336252564|ref|YP_004595671.1| - 0.00075 19.3 30.9 0.013 15.2 1.1 5.3 2 1 3 5 5 5 3 Protein of unknown function (DUF1664) AAA_13 PF13166.1 gi|336252564|ref|YP_004595671.1| - 0.0021 16.5 33.6 0.048 12.1 9.7 2.3 1 1 1 2 2 2 2 AAA domain Reo_sigmaC PF04582.7 gi|336252564|ref|YP_004595671.1| - 0.0035 16.5 35.5 0.0059 15.8 5.8 3.6 1 1 2 4 4 4 3 Reovirus sigma C capsid protein TPR_MLP1_2 PF07926.7 gi|336252564|ref|YP_004595671.1| - 0.0053 16.4 7.1 0.0053 16.4 4.9 4.3 3 2 0 3 3 3 1 TPR/MLP1/MLP2-like protein Laminin_II PF06009.7 gi|336252564|ref|YP_004595671.1| - 0.0074 16.0 43.5 0.26 11.0 0.9 5.2 2 2 3 6 6 6 4 Laminin Domain II DUF4200 PF13863.1 gi|336252564|ref|YP_004595671.1| - 0.011 15.6 5.8 0.011 15.6 4.0 4.4 3 2 2 5 5 5 0 Domain of unknown function (DUF4200) NinB PF05772.7 gi|336252564|ref|YP_004595671.1| - 0.03 13.9 0.9 0.21 11.2 0.1 2.7 2 1 0 2 2 2 0 NinB protein V_ATPase_I PF01496.14 gi|336252564|ref|YP_004595671.1| - 0.037 11.8 28.9 0.15 9.9 9.4 2.3 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family DUF948 PF06103.6 gi|336252564|ref|YP_004595671.1| - 0.079 12.8 40.6 0.46 10.3 2.0 6.6 4 3 5 9 9 8 0 Bacterial protein of unknown function (DUF948) DUF4201 PF13870.1 gi|336252564|ref|YP_004595671.1| - 0.12 11.7 10.4 0.043 13.2 2.6 2.9 3 1 0 3 3 3 0 Domain of unknown function (DUF4201) CorA PF01544.13 gi|336252564|ref|YP_004595671.1| - 0.18 10.8 24.2 0.35 9.8 1.0 3.7 3 1 1 4 4 4 0 CorA-like Mg2+ transporter protein Mnd1 PF03962.10 gi|336252564|ref|YP_004595671.1| - 0.23 11.1 36.1 0.27 10.8 4.7 3.8 2 1 2 4 4 4 0 Mnd1 family BLOC1_2 PF10046.4 gi|336252564|ref|YP_004595671.1| - 0.26 11.4 30.8 4.1 7.6 3.0 6.2 3 2 3 6 6 6 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Fib_alpha PF08702.5 gi|336252564|ref|YP_004595671.1| - 0.45 10.6 23.4 2.9 8.0 1.0 5.1 3 2 2 5 5 5 0 Fibrinogen alpha/beta chain family DASH_Duo1 PF08651.5 gi|336252564|ref|YP_004595671.1| - 0.81 9.3 17.5 2 8.0 0.1 6.2 5 2 2 7 7 7 0 DASH complex subunit Duo1 APG6 PF04111.7 gi|336252564|ref|YP_004595671.1| - 1.1 8.2 43.2 0.12 11.3 1.3 3.8 2 1 2 4 4 4 0 Autophagy protein Apg6 Atg14 PF10186.4 gi|336252564|ref|YP_004595671.1| - 1.1 8.1 19.5 1.2 8.0 2.3 3.5 2 1 2 4 4 4 0 UV radiation resistance protein and autophagy-related subunit 14 IFT57 PF10498.4 gi|336252564|ref|YP_004595671.1| - 1.3 7.6 27.8 1.5 7.5 2.9 3.3 2 1 2 4 4 4 0 Intra-flagellar transport protein 57 GAS PF13851.1 gi|336252564|ref|YP_004595671.1| - 1.9 7.6 25.9 2 7.5 0.3 3.7 2 1 0 3 3 3 0 Growth-arrest specific micro-tubule binding Mod_r PF07200.8 gi|336252564|ref|YP_004595671.1| - 2 8.3 26.2 3.4 7.5 0.4 4.6 2 2 2 4 4 4 0 Modifier of rudimentary (Mod(r)) protein Vip3A_N PF12495.3 gi|336252564|ref|YP_004595671.1| - 2.2 7.9 6.7 19 4.8 0.2 3.5 2 1 2 4 4 4 0 Vegetative insecticide protein 3A N terminal Tweety PF04906.8 gi|336252564|ref|YP_004595671.1| - 2.5 6.4 11.5 2.2 6.6 0.4 3.3 2 1 1 4 4 4 0 Tweety AAA_27 PF13514.1 gi|336252564|ref|YP_004595671.1| - 2.5 5.6 57.3 1.1 6.8 32.3 2.1 1 1 0 1 1 1 0 AAA domain Spectrin PF00435.16 gi|336252564|ref|YP_004595671.1| - 4.3 7.6 30.6 6.6 7.0 0.8 4.8 3 2 1 4 4 4 0 Spectrin repeat DUF869 PF05911.6 gi|336252564|ref|YP_004595671.1| - 5.9 4.9 41.8 0.024 12.9 17.0 2.0 1 1 1 2 2 2 0 Plant protein of unknown function (DUF869) SLX9 PF15341.1 gi|336252564|ref|YP_004595671.1| - 7 7.1 9.5 0.53 10.7 1.3 2.7 3 0 0 3 3 3 0 Ribosome biogenesis protein SLX9 NPV_P10 PF05531.7 gi|336252564|ref|YP_004595671.1| - 8 6.7 40.1 7 6.9 0.1 7.3 2 2 3 6 6 6 0 Nucleopolyhedrovirus P10 protein Med15_fungi PF05397.7 gi|336252564|ref|YP_004595671.1| - 8.8 6.3 7.4 4.3 7.3 0.1 3.6 3 2 2 6 6 3 0 Mediator complex subunit 15 ERM PF00769.14 gi|336252564|ref|YP_004595671.1| - 9.4 5.6 48.5 1.3 8.5 1.8 3.5 2 1 0 2 2 1 0 Ezrin/radixin/moesin family HATPase_c PF02518.21 gi|336252565|ref|YP_004595672.1| - 3.2e-18 65.4 0.1 6.1e-18 64.5 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|336252565|ref|YP_004595672.1| - 4e-13 49.1 3.9 4.4e-13 49.0 1.4 2.2 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain GAF_2 PF13185.1 gi|336252565|ref|YP_004595672.1| - 1.2e-07 32.3 1.2 6.3e-07 30.0 0.1 2.8 2 1 0 2 2 2 1 GAF domain GAF PF01590.21 gi|336252565|ref|YP_004595672.1| - 1.3e-06 28.6 0.6 3.4e-05 24.0 0.3 2.8 2 1 0 2 2 2 1 GAF domain GAF_3 PF13492.1 gi|336252565|ref|YP_004595672.1| - 1.5e-06 28.3 0.0 6.5e-06 26.2 0.0 2.0 1 1 0 1 1 1 1 GAF domain HATPase_c_2 PF13581.1 gi|336252565|ref|YP_004595672.1| - 0.0026 17.5 0.1 0.0073 16.0 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.1 gi|336252565|ref|YP_004595672.1| - 0.0075 15.9 0.0 0.014 15.0 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PDT PF00800.13 gi|336252566|ref|YP_004595673.1| - 5.4e-47 159.6 0.1 6.6e-47 159.4 0.1 1.1 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.20 gi|336252566|ref|YP_004595673.1| - 1.1e-06 28.0 0.0 3.2e-06 26.5 0.0 1.8 1 0 0 1 1 1 1 ACT domain CBS PF00571.23 gi|336252567|ref|YP_004595674.1| - 4.9e-29 99.8 2.1 1.8e-13 50.0 0.1 2.2 2 0 0 2 2 2 2 CBS domain AhpC-TSA PF00578.16 gi|336252568|ref|YP_004595675.1| - 1.4e-29 102.3 0.0 1.7e-29 102.0 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|336252568|ref|YP_004595675.1| - 3.6e-19 68.7 0.0 4.1e-19 68.5 0.0 1.0 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.1 gi|336252568|ref|YP_004595675.1| - 2.3e-05 24.2 0.0 4.2e-05 23.4 0.0 1.3 1 1 0 1 1 1 1 AhpC/TSA antioxidant enzyme DUF899 PF05988.7 gi|336252568|ref|YP_004595675.1| - 0.00067 19.1 0.0 0.00084 18.8 0.0 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF899) Galanin PF01296.13 gi|336252568|ref|YP_004595675.1| - 0.12 12.2 0.0 0.19 11.5 0.0 1.3 1 0 0 1 1 1 0 Galanin HSP20 PF00011.16 gi|336252569|ref|YP_004595676.1| - 1.9e-18 66.2 0.0 2.4e-18 65.8 0.0 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family GvpH PF05455.6 gi|336252569|ref|YP_004595676.1| - 0.016 14.8 0.4 0.023 14.3 0.3 1.3 1 0 0 1 1 1 0 GvpH PIH1 PF08190.7 gi|336252569|ref|YP_004595676.1| - 0.13 11.7 0.0 0.17 11.3 0.0 1.1 1 0 0 1 1 1 0 pre-RNA processing PIH1/Nop17 tRNA-synt_1 PF00133.17 gi|336252571|ref|YP_004595678.1| - 8.4e-77 258.5 1.3 4.5e-28 97.6 0.0 4.9 2 2 2 4 4 4 4 tRNA synthetases class I (I, L, M and V) tRNA-synt_1_2 PF13603.1 gi|336252571|ref|YP_004595678.1| - 1.5e-54 184.1 0.0 3.2e-54 183.0 0.0 1.6 2 0 0 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1g PF09334.6 gi|336252571|ref|YP_004595678.1| - 2.5e-41 141.6 0.6 6.1e-25 87.6 0.0 4.5 4 1 0 4 4 4 2 tRNA synthetases class I (M) Anticodon_1 PF08264.8 gi|336252571|ref|YP_004595678.1| - 1.1e-17 64.2 0.0 1.9e-17 63.4 0.0 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.14 gi|336252571|ref|YP_004595678.1| - 8.9e-09 34.8 0.1 2.5e-06 26.8 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.13 gi|336252571|ref|YP_004595678.1| - 1.5e-05 23.8 0.0 0.0016 17.1 0.0 2.7 2 1 0 2 2 2 1 tRNA synthetases class I (K) DZR PF12773.2 gi|336252571|ref|YP_004595678.1| - 0.0037 17.0 6.5 0.069 12.9 0.2 2.6 2 1 0 2 2 2 2 Double zinc ribbon tRNA-synt_1d PF00750.14 gi|336252571|ref|YP_004595678.1| - 0.011 14.6 0.0 0.62 8.8 0.0 2.2 2 0 0 2 2 2 0 tRNA synthetases class I (R) zf-ribbon_3 PF13248.1 gi|336252571|ref|YP_004595678.1| - 0.05 12.8 2.3 0.95 8.7 0.1 2.8 3 0 0 3 3 3 0 zinc-ribbon domain tRNA-synt_1b PF00579.20 gi|336252571|ref|YP_004595678.1| - 0.12 11.4 0.1 0.36 9.9 0.0 1.8 2 0 0 2 2 2 0 tRNA synthetases class I (W and Y) Zn-ribbon_8 PF09723.5 gi|336252571|ref|YP_004595678.1| - 0.59 10.1 4.1 1.3 9.0 0.2 3.0 3 0 0 3 3 3 0 Zinc ribbon domain DNA_ligase_ZBD PF03119.11 gi|336252571|ref|YP_004595678.1| - 0.83 9.4 0.0 0.83 9.4 0.0 3.2 3 1 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain TF_Zn_Ribbon PF08271.7 gi|336252571|ref|YP_004595678.1| - 1.3 8.4 8.5 5.1 6.4 0.2 3.6 3 0 0 3 3 3 0 TFIIB zinc-binding Na_Ca_ex PF01699.19 gi|336252572|ref|YP_004595679.1| - 3.5e-16 59.0 35.8 7.9e-15 54.6 6.4 2.6 3 0 0 3 3 3 2 Sodium/calcium exchanger protein DUF2665 PF11654.3 gi|336252572|ref|YP_004595679.1| - 0.071 12.6 0.2 0.16 11.5 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2665) GST_N_3 PF13417.1 gi|336252573|ref|YP_004595680.1| - 1.3e-10 41.3 0.0 1.7e-10 40.9 0.0 1.2 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_2 PF13409.1 gi|336252573|ref|YP_004595680.1| - 1.9e-05 24.5 0.0 2.7e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Glutaredoxin PF00462.19 gi|336252573|ref|YP_004595680.1| - 0.00037 20.4 0.0 0.00071 19.5 0.0 1.4 1 0 0 1 1 1 1 Glutaredoxin CCG PF02754.11 gi|336252574|ref|YP_004595681.1| - 2.2e-17 62.8 0.0 1.3e-12 47.4 0.1 2.4 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_9 PF13187.1 gi|336252574|ref|YP_004595681.1| - 7.9e-11 42.0 9.4 2.2e-10 40.6 4.6 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|336252574|ref|YP_004595681.1| - 8e-11 41.8 6.3 8e-11 41.8 4.4 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|336252574|ref|YP_004595681.1| - 6.5e-10 38.1 12.4 1.6e-05 24.3 0.9 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|336252574|ref|YP_004595681.1| - 1.6e-09 38.0 4.3 0.0021 18.4 0.2 3.6 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|336252574|ref|YP_004595681.1| - 8.6e-08 32.4 21.0 1.4e-06 28.6 7.7 2.5 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|336252574|ref|YP_004595681.1| - 1.3e-07 31.2 14.0 6e-06 25.9 9.4 2.9 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|336252574|ref|YP_004595681.1| - 7.1e-07 28.7 19.3 9.9e-05 22.0 1.3 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|336252574|ref|YP_004595681.1| - 3.5e-05 23.4 22.4 0.00014 21.5 2.0 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|336252574|ref|YP_004595681.1| - 3.5e-05 24.0 12.0 4.6e-05 23.6 6.5 2.6 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|336252574|ref|YP_004595681.1| - 0.00013 21.7 11.4 0.02 14.7 0.3 2.9 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|336252574|ref|YP_004595681.1| - 0.00041 20.4 19.0 0.0046 17.1 0.6 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|336252574|ref|YP_004595681.1| - 0.0022 18.7 13.8 0.012 16.3 8.7 2.7 2 1 1 3 3 3 2 4Fe-4S double cluster binding domain Acid_PPase PF12689.2 gi|336252574|ref|YP_004595681.1| - 0.043 13.4 0.0 0.074 12.6 0.0 1.3 1 0 0 1 1 1 0 Acid Phosphatase Fer4_3 PF12798.2 gi|336252574|ref|YP_004595681.1| - 0.42 11.2 25.9 0.17 12.5 3.4 3.2 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|336252574|ref|YP_004595681.1| - 0.45 10.9 17.0 0.17 12.3 0.4 3.1 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|336252574|ref|YP_004595681.1| - 2.9 8.5 15.1 0.64 10.6 0.7 3.3 3 1 0 3 3 3 0 4Fe-4S single cluster domain HTH_Tnp_1 PF01527.15 gi|336252575|ref|YP_004595682.1| - 0.0037 17.1 0.1 0.019 14.9 0.0 2.1 2 0 0 2 2 2 1 Transposase HAMP PF00672.20 gi|336252575|ref|YP_004595682.1| - 0.019 15.1 0.6 0.1 12.7 0.0 2.3 2 0 0 2 2 2 0 HAMP domain HTH_23 PF13384.1 gi|336252575|ref|YP_004595682.1| - 0.024 14.2 0.0 1.4 8.7 0.0 2.4 2 0 0 2 2 2 0 Homeodomain-like domain HTH_29 PF13551.1 gi|336252575|ref|YP_004595682.1| - 0.15 12.1 1.8 1.6 8.8 0.1 2.4 2 1 0 2 2 2 0 Winged helix-turn helix ApoO PF09769.4 gi|336252575|ref|YP_004595682.1| - 0.2 11.3 1.4 0.35 10.5 0.1 1.8 2 0 0 2 2 2 0 Apolipoprotein O DUF4659 PF15558.1 gi|336252575|ref|YP_004595682.1| - 1.4 7.5 8.4 1.1 7.7 1.2 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4659) zf-C4H2 PF10146.4 gi|336252575|ref|YP_004595682.1| - 2.1 8.3 9.0 0.2 11.6 2.5 1.8 1 1 0 2 2 2 0 Zinc finger-containing protein DUF1451 PF07295.6 gi|336252575|ref|YP_004595682.1| - 2.4 7.9 9.3 0.2 11.4 1.5 2.4 1 1 0 2 2 2 0 Protein of unknown function (DUF1451) PDDEXK_1 PF12705.2 gi|336252576|ref|YP_004595683.1| - 1.5e-05 24.5 3.6 0.0067 15.8 0.2 2.3 1 1 0 2 2 2 2 PD-(D/E)XK nuclease superfamily Cas_Cas4 PF01930.12 gi|336252576|ref|YP_004595683.1| - 0.0041 17.0 0.0 0.014 15.3 0.0 1.7 2 0 0 2 2 2 1 Domain of unknown function DUF83 Abhydrolase_1 PF00561.15 gi|336252577|ref|YP_004595684.1| - 2e-20 73.3 0.0 2.9e-20 72.8 0.0 1.2 1 0 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.2 gi|336252577|ref|YP_004595684.1| - 2.6e-14 53.6 4.6 3.6e-14 53.2 3.2 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Cys_Met_Meta_PP PF01053.15 gi|336252578|ref|YP_004595685.1| - 1.3e-139 464.7 0.0 1.5e-139 464.5 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|336252578|ref|YP_004595685.1| - 8.4e-09 34.9 0.8 2e-08 33.6 0.6 1.5 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.16 gi|336252578|ref|YP_004595685.1| - 3.9e-08 32.6 0.0 6.6e-08 31.8 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|336252578|ref|YP_004595685.1| - 1.2e-05 24.2 0.0 2.7e-05 23.1 0.0 1.5 1 1 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|336252578|ref|YP_004595685.1| - 0.00011 21.4 0.1 0.00026 20.2 0.0 1.5 1 1 0 1 1 1 1 Beta-eliminating lyase DUF347 PF03988.7 gi|336252579|ref|YP_004595686.1| - 0.021 14.6 3.7 0.022 14.6 0.1 2.0 2 0 0 2 2 2 0 Repeat of Unknown Function (DUF347) IGPD PF00475.13 gi|336252580|ref|YP_004595687.1| - 1e-61 207.0 1.2 1.4e-61 206.5 0.8 1.2 1 0 0 1 1 1 1 Imidazoleglycerol-phosphate dehydratase Lar_restr_allev PF14354.1 gi|336252581|ref|YP_004595688.1| - 0.093 13.0 0.1 0.26 11.6 0.0 1.9 1 0 0 1 1 1 0 Restriction alleviation protein Lar ACT_7 PF13840.1 gi|336252582|ref|YP_004595689.1| - 0.00034 20.0 0.1 0.001 18.5 0.0 1.8 2 0 0 2 2 2 1 ACT domain ACT PF01842.20 gi|336252582|ref|YP_004595689.1| - 0.0011 18.4 0.2 0.0045 16.4 0.2 2.2 1 1 0 1 1 1 1 ACT domain UPF0029 PF01205.14 gi|336252584|ref|YP_004595691.1| - 7.5e-35 118.9 0.0 9.8e-35 118.5 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein family UPF0029 DUF1949 PF09186.6 gi|336252584|ref|YP_004595691.1| - 5.9e-13 48.2 0.7 2.1e-12 46.4 0.1 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF1949) EFG_C PF00679.19 gi|336252584|ref|YP_004595691.1| - 0.00073 19.3 0.0 0.0014 18.4 0.0 1.4 1 0 0 1 1 1 1 Elongation factor G C-terminus bPH_6 PF10756.4 gi|336252585|ref|YP_004595692.1| - 0.00099 18.9 0.2 0.00099 18.9 0.2 2.5 3 0 0 3 3 3 1 Bacterial PH domain DctM PF06808.7 gi|336252586|ref|YP_004595693.1| - 6.6e-77 258.8 51.0 1.3e-53 182.0 18.2 2.6 2 0 0 2 2 2 2 DctM-like transporters DUF1850 PF08905.6 gi|336252587|ref|YP_004595694.1| - 2.6e-18 65.6 0.0 3.8e-18 65.0 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1850) PQQ_2 PF13360.1 gi|336252587|ref|YP_004595694.1| - 0.038 13.4 0.1 0.069 12.6 0.1 1.5 1 1 0 1 1 1 0 PQQ-like domain DUF2198 PF09964.4 gi|336252587|ref|YP_004595694.1| - 0.046 13.4 0.8 0.076 12.7 0.5 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2198) VirB8 PF04335.8 gi|336252587|ref|YP_004595694.1| - 0.099 12.2 1.0 0.15 11.6 0.7 1.2 1 0 0 1 1 1 0 VirB8 protein NMT1 PF09084.6 gi|336252588|ref|YP_004595695.1| - 1.7e-09 37.5 1.7 1e-08 35.0 0.0 2.2 2 0 0 2 2 2 1 NMT1/THI5 like Phosphonate-bd PF12974.2 gi|336252588|ref|YP_004595695.1| - 7.4e-09 35.3 0.5 1.1e-08 34.8 0.3 1.3 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein TAT_signal PF10518.4 gi|336252588|ref|YP_004595695.1| - 0.02 14.8 0.4 0.053 13.5 0.3 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Trypan_PARP PF05887.6 gi|336252588|ref|YP_004595695.1| - 0.37 10.6 4.7 0.66 9.7 3.3 1.4 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) Peptidase_S9 PF00326.16 gi|336252589|ref|YP_004595696.1| - 1.4e-56 191.0 0.2 2e-56 190.6 0.1 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family PD40 PF07676.7 gi|336252589|ref|YP_004595696.1| - 5.2e-18 64.2 2.7 5.9e-07 29.0 0.0 5.2 4 0 0 4 4 4 3 WD40-like Beta Propeller Repeat Abhydrolase_5 PF12695.2 gi|336252589|ref|YP_004595696.1| - 6.4e-10 38.9 0.1 1.2e-09 38.0 0.1 1.5 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|336252589|ref|YP_004595696.1| - 3.7e-08 33.5 6.5 4.6e-07 29.9 4.5 2.5 1 1 0 1 1 1 1 Alpha/beta hydrolase family DLH PF01738.13 gi|336252589|ref|YP_004595696.1| - 4.7e-07 29.3 0.0 1e-06 28.2 0.0 1.5 1 1 0 1 1 1 1 Dienelactone hydrolase family AXE1 PF05448.7 gi|336252589|ref|YP_004595696.1| - 1.6e-06 26.8 0.3 0.00022 19.8 0.2 2.2 1 1 0 1 1 1 1 Acetyl xylan esterase (AXE1) DPPIV_N PF00930.16 gi|336252589|ref|YP_004595696.1| - 0.00051 18.7 0.0 0.49 8.9 0.0 3.7 3 1 0 3 3 3 1 Dipeptidyl peptidase IV (DPP IV) N-terminal region Abhydrolase_4 PF08386.5 gi|336252589|ref|YP_004595696.1| - 0.028 14.3 0.0 0.28 11.1 0.0 2.2 2 0 0 2 2 2 0 TAP-like protein Gmad1 PF10647.4 gi|336252589|ref|YP_004595696.1| - 0.049 13.0 11.2 0.017 14.5 2.3 3.4 2 2 1 3 3 3 0 Lipoprotein LpqB beta-propeller domain Abhydrolase_3 PF07859.8 gi|336252589|ref|YP_004595696.1| - 0.06 12.9 0.2 3.4 7.1 0.0 2.4 1 1 0 2 2 2 0 alpha/beta hydrolase fold BAAT_C PF08840.6 gi|336252589|ref|YP_004595696.1| - 0.14 11.7 0.0 3 7.4 0.0 2.1 1 1 0 1 1 1 0 BAAT / Acyl-CoA thioester hydrolase C terminal Abhydrolase_2 PF02230.11 gi|336252589|ref|YP_004595696.1| - 0.19 11.1 0.0 1.3 8.4 0.0 2.2 3 0 0 3 3 3 0 Phospholipase/Carboxylesterase Peptidase_S28 PF05577.7 gi|336252589|ref|YP_004595696.1| - 0.22 10.0 0.0 0.32 9.5 0.0 1.1 1 0 0 1 1 1 0 Serine carboxypeptidase S28 DUF2892 PF11127.3 gi|336252590|ref|YP_004595697.1| - 8.1e-16 57.6 0.3 8.6e-16 57.5 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2892) UxuA PF03786.8 gi|336252591|ref|YP_004595698.1| - 2.1e-81 273.1 0.2 1.1e-61 208.3 0.0 2.0 1 1 1 2 2 2 2 D-mannonate dehydratase (UxuA) AP_endonuc_2 PF01261.19 gi|336252591|ref|YP_004595698.1| - 2.3e-19 69.5 0.2 3e-19 69.1 0.1 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Cupin_2 PF07883.6 gi|336252592|ref|YP_004595699.1| - 3.1e-11 42.5 0.1 5.2e-11 41.8 0.1 1.4 1 0 0 1 1 1 1 Cupin domain MannoseP_isomer PF01050.13 gi|336252592|ref|YP_004595699.1| - 9.8e-05 22.0 0.0 0.00012 21.6 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase KduI PF04962.7 gi|336252592|ref|YP_004595699.1| - 0.0025 16.9 0.0 0.003 16.6 0.0 1.1 1 0 0 1 1 1 1 KduI/IolB family AraC_binding PF02311.14 gi|336252592|ref|YP_004595699.1| - 0.0079 15.8 0.0 0.01 15.4 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_7 PF12973.2 gi|336252592|ref|YP_004595699.1| - 0.015 15.1 0.0 0.019 14.8 0.0 1.2 1 0 0 1 1 1 0 ChrR Cupin-like domain Cupin_1 PF00190.17 gi|336252592|ref|YP_004595699.1| - 0.028 13.8 0.0 0.044 13.2 0.0 1.3 1 0 0 1 1 1 0 Cupin UPRTase PF14681.1 gi|336252593|ref|YP_004595700.1| - 1.1e-56 191.2 0.0 1.3e-56 191.0 0.0 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.22 gi|336252593|ref|YP_004595700.1| - 6.4e-07 29.1 0.2 1e-06 28.5 0.1 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain BPD_transp_1 PF00528.17 gi|336252596|ref|YP_004595703.1| - 1.4e-17 63.8 7.7 1.4e-17 63.8 5.3 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|336252597|ref|YP_004595704.1| - 6.3e-33 113.9 0.0 8.3e-33 113.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|336252597|ref|YP_004595704.1| - 9.6e-14 52.0 0.0 7.3e-07 29.4 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|336252597|ref|YP_004595704.1| - 7.7e-07 28.5 0.0 2.8e-06 26.7 0.0 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|336252597|ref|YP_004595704.1| - 4.5e-05 22.8 0.0 0.0001 21.7 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|336252597|ref|YP_004595704.1| - 6.5e-05 22.1 0.0 0.043 12.8 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_16 PF13191.1 gi|336252597|ref|YP_004595704.1| - 0.00067 19.6 0.5 0.0018 18.3 0.3 1.9 1 1 0 1 1 1 1 AAA ATPase domain DUF258 PF03193.11 gi|336252597|ref|YP_004595704.1| - 0.001 18.3 0.0 0.0015 17.7 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 MobB PF03205.9 gi|336252597|ref|YP_004595704.1| - 0.0014 18.3 0.0 0.0043 16.7 0.0 1.7 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.1 gi|336252597|ref|YP_004595704.1| - 0.0017 18.5 0.0 0.0048 17.0 0.0 1.8 1 1 0 1 1 1 1 AAA domain ABC_ATPase PF09818.4 gi|336252597|ref|YP_004595704.1| - 0.0027 16.3 0.2 1.4 7.3 0.0 2.2 2 0 0 2 2 2 2 Predicted ATPase of the ABC class AAA_25 PF13481.1 gi|336252597|ref|YP_004595704.1| - 0.0034 16.8 0.0 0.02 14.3 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|336252597|ref|YP_004595704.1| - 0.0035 17.6 0.0 0.0044 17.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|336252597|ref|YP_004595704.1| - 0.0045 16.4 0.0 0.019 14.4 0.0 1.8 2 0 0 2 2 2 1 AAA-like domain AAA_33 PF13671.1 gi|336252597|ref|YP_004595704.1| - 0.0055 16.5 0.1 0.0092 15.8 0.0 1.5 1 1 0 1 1 1 1 AAA domain Mg_chelatase PF01078.16 gi|336252597|ref|YP_004595704.1| - 0.013 14.7 0.0 0.22 10.6 0.0 2.1 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_17 PF13207.1 gi|336252597|ref|YP_004595704.1| - 0.036 14.8 0.2 0.062 14.1 0.1 1.7 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.1 gi|336252597|ref|YP_004595704.1| - 0.038 13.8 0.8 0.48 10.3 0.6 2.4 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_5 PF07728.9 gi|336252597|ref|YP_004595704.1| - 0.077 12.7 0.0 0.31 10.7 0.0 1.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) HemN_C PF06969.11 gi|336252597|ref|YP_004595704.1| - 0.077 13.0 0.0 0.28 11.2 0.0 1.9 2 0 0 2 2 2 0 HemN C-terminal domain AAA_18 PF13238.1 gi|336252597|ref|YP_004595704.1| - 0.096 12.9 0.0 0.17 12.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|336252597|ref|YP_004595704.1| - 0.11 12.1 0.0 0.26 10.9 0.0 1.6 2 0 0 2 2 2 0 Archaeal ATPase oligo_HPY PF08352.7 gi|336252597|ref|YP_004595704.1| - 0.12 12.7 0.0 0.27 11.5 0.0 1.6 1 0 0 1 1 1 0 Oligopeptide/dipeptide transporter, C-terminal region BPD_transp_1 PF00528.17 gi|336252598|ref|YP_004595705.1| - 2.2e-16 59.9 10.0 2.2e-16 59.9 7.0 1.5 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component DUF1232 PF06803.7 gi|336252598|ref|YP_004595705.1| - 0.27 10.6 7.1 0.075 12.4 0.6 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1232) Baculo_11_kDa PF06143.6 gi|336252598|ref|YP_004595705.1| - 3.9 6.9 5.4 9.1 5.7 0.4 2.3 2 0 0 2 2 2 0 Baculovirus 11 kDa family SBP_bac_3 PF00497.15 gi|336252599|ref|YP_004595706.1| - 2.4e-55 187.2 0.7 2.8e-55 187.0 0.5 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 NMT1 PF09084.6 gi|336252599|ref|YP_004595706.1| - 0.0094 15.5 0.1 0.44 10.1 0.0 2.2 1 1 1 2 2 2 2 NMT1/THI5 like PHO4 PF01384.15 gi|336252600|ref|YP_004595707.1| - 4.5e-37 127.4 38.5 4.5e-37 127.4 26.7 2.1 1 1 1 2 2 2 1 Phosphate transporter family FA_desaturase PF00487.19 gi|336252601|ref|YP_004595708.1| - 0.49 9.7 4.0 0.79 9.1 2.8 1.5 1 1 0 1 1 1 0 Fatty acid desaturase Choline_transpo PF04515.7 gi|336252601|ref|YP_004595708.1| - 1.8 7.2 6.4 0.28 9.8 0.2 2.1 1 1 0 2 2 2 0 Plasma-membrane choline transporter DUF21 PF01595.15 gi|336252602|ref|YP_004595709.1| - 7.5e-54 181.7 0.7 1.1e-53 181.2 0.5 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF21 CorC_HlyC PF03471.12 gi|336252602|ref|YP_004595709.1| - 4.9e-21 74.2 3.0 4.9e-21 74.2 2.0 1.9 2 0 0 2 2 2 1 Transporter associated domain CBS PF00571.23 gi|336252602|ref|YP_004595709.1| - 2.3e-20 72.0 3.2 3.3e-10 39.6 0.2 2.8 2 0 0 2 2 2 2 CBS domain GST_N_3 PF13417.1 gi|336252603|ref|YP_004595710.1| - 2.1e-14 53.5 0.0 2.4e-14 53.3 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Glutaredoxin PF00462.19 gi|336252603|ref|YP_004595710.1| - 4.7e-13 48.9 0.1 6.7e-13 48.4 0.1 1.2 1 0 0 1 1 1 1 Glutaredoxin GST_N_2 PF13409.1 gi|336252603|ref|YP_004595710.1| - 1.9e-11 43.8 0.0 2.2e-11 43.5 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N PF02798.15 gi|336252603|ref|YP_004595710.1| - 0.00062 19.8 0.0 0.00088 19.3 0.0 1.3 1 1 0 1 1 1 1 Glutathione S-transferase, N-terminal domain DUF836 PF05768.9 gi|336252603|ref|YP_004595710.1| - 0.0095 16.1 0.1 0.013 15.7 0.0 1.4 1 1 0 1 1 1 1 Glutaredoxin-like domain (DUF836) AhpC-TSA PF00578.16 gi|336252604|ref|YP_004595711.1| - 1.2e-13 50.8 0.0 1.5e-13 50.5 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|336252604|ref|YP_004595711.1| - 1.5e-06 27.8 0.0 2.8e-06 26.9 0.0 1.5 1 1 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.1 gi|336252604|ref|YP_004595711.1| - 0.0012 18.7 0.0 0.0017 18.2 0.0 1.3 1 0 0 1 1 1 1 AhpC/TSA antioxidant enzyme Sua5_yciO_yrdC PF01300.13 gi|336252605|ref|YP_004595712.1| - 9.4e-48 161.8 0.0 1.1e-47 161.6 0.0 1.0 1 0 0 1 1 1 1 Telomere recombination Amidohydro_1 PF01979.15 gi|336252607|ref|YP_004595714.1| - 1.1e-25 91.0 0.0 1.4e-25 90.6 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|336252607|ref|YP_004595714.1| - 3.9e-13 49.0 0.1 2.6e-12 46.3 0.0 2.3 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|336252607|ref|YP_004595714.1| - 1.7e-10 40.7 0.9 5.2e-07 29.2 0.1 2.5 2 0 0 2 2 2 2 Amidohydrolase family Amidohydro_4 PF13147.1 gi|336252607|ref|YP_004595714.1| - 4.7e-10 39.9 12.1 2.1e-09 37.8 6.2 2.9 2 1 0 2 2 2 1 Amidohydrolase HTH_10 PF04967.7 gi|336252608|ref|YP_004595715.1| - 1.3e-13 50.3 0.1 2e-13 49.7 0.1 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4_2 PF08281.7 gi|336252608|ref|YP_004595715.1| - 5.2e-06 25.8 0.4 6.6e-05 22.2 0.3 2.2 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_psq PF05225.11 gi|336252608|ref|YP_004595715.1| - 0.021 14.3 0.1 0.049 13.2 0.1 1.6 1 1 0 1 1 1 0 helix-turn-helix, Psq domain HTH_30 PF13556.1 gi|336252608|ref|YP_004595715.1| - 0.025 14.1 0.0 0.054 13.0 0.0 1.5 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain HTH_24 PF13412.1 gi|336252608|ref|YP_004595715.1| - 0.031 13.6 0.0 0.056 12.8 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HAD PF12710.2 gi|336252609|ref|YP_004595716.1| - 1.2e-21 77.7 0.5 1.5e-21 77.4 0.4 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|336252609|ref|YP_004595716.1| - 4.3e-16 59.9 5.5 2.4e-12 47.7 0.7 2.1 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|336252609|ref|YP_004595716.1| - 7e-11 42.1 0.4 8.4e-09 35.3 0.0 2.8 3 0 0 3 3 3 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|336252609|ref|YP_004595716.1| - 1.2e-07 32.1 0.6 2.1e-06 28.1 0.0 2.1 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase UMPH-1 PF05822.7 gi|336252609|ref|YP_004595716.1| - 0.012 14.9 0.0 0.019 14.2 0.0 1.4 1 1 0 1 1 1 0 Pyrimidine 5'-nucleotidase (UMPH-1) Put_Phosphatase PF06888.7 gi|336252609|ref|YP_004595716.1| - 0.057 12.5 0.0 0.72 8.9 0.0 2.0 2 0 0 2 2 2 0 Putative Phosphatase PAS_9 PF13426.1 gi|336252610|ref|YP_004595717.1| - 4e-26 91.4 0.0 1.6e-13 50.9 0.0 2.5 2 0 0 2 2 2 2 PAS domain PAS_4 PF08448.5 gi|336252610|ref|YP_004595717.1| - 1.7e-22 79.5 1.7 1.7e-10 40.8 0.1 2.9 3 1 1 4 4 4 2 PAS fold HATPase_c PF02518.21 gi|336252610|ref|YP_004595717.1| - 7.6e-21 73.9 0.0 1.2e-20 73.2 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.19 gi|336252610|ref|YP_004595717.1| - 1.7e-16 60.0 0.0 1.6e-11 43.9 0.0 2.8 2 1 0 2 2 2 2 PAS fold PAS_8 PF13188.1 gi|336252610|ref|YP_004595717.1| - 1e-12 47.3 0.0 6.8e-07 28.9 0.0 3.7 3 0 0 3 3 3 2 PAS domain HATPase_c_2 PF13581.1 gi|336252610|ref|YP_004595717.1| - 8.2e-09 35.3 1.2 1.5e-08 34.5 0.1 2.0 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain PAS_3 PF08447.6 gi|336252610|ref|YP_004595717.1| - 5.9e-05 23.0 0.0 0.00084 19.3 0.0 2.4 2 0 0 2 2 2 1 PAS fold HATPase_c_5 PF14501.1 gi|336252610|ref|YP_004595717.1| - 0.00049 19.7 0.0 0.00085 18.9 0.0 1.3 1 0 0 1 1 1 1 GHKL domain HisKA PF00512.20 gi|336252610|ref|YP_004595717.1| - 0.0017 18.2 0.5 0.0045 16.9 0.1 1.9 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.1 gi|336252610|ref|YP_004595717.1| - 0.036 13.7 0.0 0.062 12.9 0.0 1.3 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_7 PF12860.2 gi|336252610|ref|YP_004595717.1| - 0.037 14.0 0.0 0.58 10.1 0.0 2.6 2 1 1 3 3 3 0 PAS fold 2-Hacid_dh_C PF02826.14 gi|336252611|ref|YP_004595718.1| - 1.8e-60 203.1 0.0 3.5e-60 202.2 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|336252611|ref|YP_004595718.1| - 2.2e-36 124.2 0.4 3.8e-36 123.4 0.3 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IlvN PF07991.7 gi|336252611|ref|YP_004595718.1| - 3.5e-05 23.2 0.0 0.00023 20.5 0.0 2.2 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain ELFV_dehydrog PF00208.16 gi|336252611|ref|YP_004595718.1| - 4.4e-05 23.1 0.0 0.00013 21.5 0.0 1.8 2 0 0 2 2 2 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ACT PF01842.20 gi|336252611|ref|YP_004595718.1| - 8.3e-05 21.9 0.9 0.00038 19.8 0.0 2.7 2 0 0 2 2 2 1 ACT domain UDPG_MGDP_dh_C PF03720.10 gi|336252611|ref|YP_004595718.1| - 0.00014 21.9 0.0 0.00062 19.8 0.0 2.1 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_binding_2 PF03446.10 gi|336252611|ref|YP_004595718.1| - 0.0012 18.7 2.9 0.005 16.7 0.0 3.2 4 1 1 5 5 5 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_7 PF13241.1 gi|336252611|ref|YP_004595718.1| - 0.0042 17.3 0.0 0.011 15.9 0.0 1.8 1 0 0 1 1 1 1 Putative NAD(P)-binding TrkA_N PF02254.13 gi|336252611|ref|YP_004595718.1| - 0.0046 16.9 0.1 0.028 14.4 0.0 2.5 2 0 0 2 2 1 1 TrkA-N domain AdoHcyase_NAD PF00670.16 gi|336252611|ref|YP_004595718.1| - 0.018 14.9 0.1 0.1 12.4 0.0 2.1 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 3HCDH_N PF02737.13 gi|336252611|ref|YP_004595718.1| - 0.036 13.7 0.0 0.12 12.0 0.0 1.9 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PDZ PF00595.19 gi|336252611|ref|YP_004595718.1| - 0.11 12.6 1.5 0.23 11.6 0.1 2.3 2 0 0 2 2 2 0 PDZ domain (Also known as DHR or GLGF) Lipase_GDSL_3 PF14606.1 gi|336252613|ref|YP_004595720.1| - 6.5e-29 100.9 0.0 8.2e-29 100.5 0.0 1.1 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family Lipase_GDSL_2 PF13472.1 gi|336252613|ref|YP_004595720.1| - 9.1e-15 55.2 0.7 1.3e-14 54.6 0.5 1.3 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family PRA-CH PF01502.13 gi|336252614|ref|YP_004595721.1| - 7.4e-37 124.8 0.6 9.2e-37 124.5 0.1 1.4 2 0 0 2 2 2 1 Phosphoribosyl-AMP cyclohydrolase HBS1_N PF08938.5 gi|336252615|ref|YP_004595722.1| - 0.29 11.2 4.4 5.1 7.2 0.1 3.1 2 0 0 2 2 2 0 HBS1 N-terminus Usp PF00582.21 gi|336252616|ref|YP_004595723.1| - 9e-34 116.6 0.6 1e-33 116.5 0.4 1.0 1 0 0 1 1 1 1 Universal stress protein family HPP PF04982.8 gi|336252617|ref|YP_004595724.1| - 1.4e-13 50.6 6.4 2.5e-13 49.9 4.4 1.4 1 0 0 1 1 1 1 HPP family PGM_PMM_I PF02878.11 gi|336252618|ref|YP_004595725.1| - 6.6e-34 116.3 0.0 1.1e-33 115.5 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|336252618|ref|YP_004595725.1| - 2.8e-28 98.3 3.3 8.5e-28 96.7 0.3 2.6 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.15 gi|336252618|ref|YP_004595725.1| - 1.2e-14 54.0 0.0 3.4e-14 52.5 0.0 1.8 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain PGM_PMM_III PF02880.11 gi|336252618|ref|YP_004595725.1| - 2.3e-14 53.4 0.0 4.9e-14 52.3 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Usp PF00582.21 gi|336252618|ref|YP_004595725.1| - 0.95 9.6 6.0 5.4 7.2 0.1 2.7 3 0 0 3 3 3 0 Universal stress protein family SBP_bac_11 PF13531.1 gi|336252619|ref|YP_004595726.1| - 0.056 13.0 0.8 0.68 9.5 0.2 2.1 1 1 0 2 2 2 0 Bacterial extracellular solute-binding protein Pribosyltran_N PF13793.1 gi|336252621|ref|YP_004595728.1| - 1.5e-19 69.8 0.0 3.1e-18 65.5 0.0 2.2 2 0 0 2 2 2 1 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.22 gi|336252621|ref|YP_004595728.1| - 2.7e-10 40.0 0.6 2.4e-09 36.9 0.1 2.3 2 0 0 2 2 2 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.1 gi|336252621|ref|YP_004595728.1| - 8.2e-08 32.2 0.5 1.5e-07 31.3 0.4 1.4 1 0 0 1 1 1 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.1 gi|336252621|ref|YP_004595728.1| - 2.7e-05 23.4 0.0 5.1e-05 22.5 0.0 1.4 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase NHL PF01436.16 gi|336252621|ref|YP_004595728.1| - 0.34 10.9 2.2 21 5.2 0.7 3.3 3 0 0 3 3 3 0 NHL repeat HNOB PF07700.10 gi|336252622|ref|YP_004595729.1| - 1.2e-14 54.1 0.0 1.4e-14 53.9 0.0 1.0 1 0 0 1 1 1 1 Heme NO binding CARDB PF07705.6 gi|336252623|ref|YP_004595730.1| - 2.1e-08 34.1 0.1 3e-06 27.2 0.1 2.9 1 1 1 2 2 2 1 CARDB Peptidase_M61 PF05299.7 gi|336252623|ref|YP_004595730.1| - 0.09 12.7 0.0 0.21 11.5 0.0 1.6 1 0 0 1 1 1 0 M61 glycyl aminopeptidase Chorion_3 PF05387.6 gi|336252623|ref|YP_004595730.1| - 0.093 12.1 4.1 1.8 7.9 0.6 2.6 2 0 0 2 2 2 0 Chorion family 3 tRNA-synt_1 PF00133.17 gi|336252624|ref|YP_004595731.1| - 1.8e-181 604.1 0.4 2.5e-181 603.7 0.3 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|336252624|ref|YP_004595731.1| - 2.5e-29 101.9 0.2 5.4e-29 100.9 0.1 1.6 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|336252624|ref|YP_004595731.1| - 3.5e-27 95.0 0.4 4.6e-10 38.7 0.0 3.8 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.1 gi|336252624|ref|YP_004595731.1| - 4e-05 22.9 0.0 0.00012 21.4 0.0 1.7 1 1 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.14 gi|336252624|ref|YP_004595731.1| - 0.012 14.8 0.0 0.89 8.6 0.0 2.5 2 0 0 2 2 2 0 tRNA synthetases class I (C) catalytic domain YrhK PF14145.1 gi|336252625|ref|YP_004595732.1| - 0.038 13.6 2.1 0.052 13.2 1.4 1.2 1 0 0 1 1 1 0 YrhK-like protein DUF2892 PF11127.3 gi|336252625|ref|YP_004595732.1| - 0.47 10.3 4.8 0.69 9.7 3.3 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2892) Cyt_c_ox_IV PF12270.3 gi|336252625|ref|YP_004595732.1| - 0.73 9.5 3.4 0.56 9.9 0.9 1.7 1 1 1 2 2 2 0 Cytochrome c oxidase subunit IV UDG PF03167.14 gi|336252626|ref|YP_004595733.1| - 2.8e-25 88.5 0.0 3.6e-25 88.2 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily Thioredoxin_3 PF13192.1 gi|336252626|ref|YP_004595733.1| - 0.12 12.2 0.0 0.43 10.4 0.0 1.8 2 0 0 2 2 2 0 Thioredoxin domain HIT PF01230.18 gi|336252627|ref|YP_004595734.1| - 2.5e-28 98.4 0.0 3.1e-28 98.1 0.0 1.1 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.3 gi|336252627|ref|YP_004595734.1| - 7.3e-17 61.6 0.0 9.1e-17 61.3 0.0 1.1 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.10 gi|336252627|ref|YP_004595734.1| - 0.027 14.0 0.0 0.039 13.5 0.0 1.2 1 0 0 1 1 1 0 Protein similar to CwfJ C-terminus 1 DUF998 PF06197.8 gi|336252628|ref|YP_004595735.1| - 0.09 12.0 3.9 0.1 11.9 2.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF998) DUF4293 PF14126.1 gi|336252628|ref|YP_004595735.1| - 0.12 12.3 0.0 0.15 11.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4293) Flavi_NS2B PF01002.14 gi|336252628|ref|YP_004595735.1| - 0.36 10.4 0.1 0.36 10.4 0.1 1.7 2 0 0 2 2 2 0 Flavivirus non-structural protein NS2B DUF4131 PF13567.1 gi|336252628|ref|YP_004595735.1| - 1 8.7 3.4 1.2 8.4 2.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) Arc_PepC_II PF06847.6 gi|336252629|ref|YP_004595736.1| - 2.9e-15 56.4 0.0 6.3e-15 55.3 0.0 1.6 1 0 0 1 1 1 1 Archaeal Peptidase A24 C-terminus Type II Peptidase_A24 PF01478.13 gi|336252629|ref|YP_004595736.1| - 9.1e-07 28.9 10.5 1.5e-05 25.1 8.6 2.0 1 1 1 2 2 2 1 Type IV leader peptidase family SKG6 PF08693.5 gi|336252629|ref|YP_004595736.1| - 4.3 6.7 12.7 15 4.9 4.9 3.8 3 0 0 3 3 3 0 Transmembrane alpha-helix domain MCPsignal PF00015.16 gi|336252630|ref|YP_004595737.1| - 3.9e-50 170.3 50.7 2.1e-47 161.4 25.1 2.1 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain Laminin_II PF06009.7 gi|336252630|ref|YP_004595737.1| - 0.00028 20.6 35.4 0.041 13.6 2.9 4.1 3 1 1 4 4 4 3 Laminin Domain II Syntaxin PF00804.20 gi|336252630|ref|YP_004595737.1| - 0.00037 20.6 26.1 0.26 11.4 2.9 3.9 2 2 1 3 3 3 2 Syntaxin DUF1664 PF07889.7 gi|336252630|ref|YP_004595737.1| - 0.0021 17.8 24.9 0.11 12.3 0.6 4.0 2 1 3 5 5 5 2 Protein of unknown function (DUF1664) HisK_N PF09385.5 gi|336252630|ref|YP_004595737.1| - 0.0023 17.5 0.8 0.0023 17.5 0.6 2.6 2 1 1 3 3 3 1 Histidine kinase N terminal TMP_2 PF06791.8 gi|336252630|ref|YP_004595737.1| - 0.0026 17.3 5.2 0.0026 17.3 3.6 3.2 1 1 2 3 3 3 2 Prophage tail length tape measure protein LXG PF04740.7 gi|336252630|ref|YP_004595737.1| - 0.01 15.6 6.1 0.01 15.6 4.2 3.3 2 2 1 3 3 3 0 LXG domain of WXG superfamily Syntaxin-6_N PF09177.6 gi|336252630|ref|YP_004595737.1| - 0.015 15.6 25.2 0.066 13.6 1.3 4.1 2 2 2 4 4 4 0 Syntaxin 6, N-terminal DUF948 PF06103.6 gi|336252630|ref|YP_004595737.1| - 0.019 14.8 28.1 0.11 12.3 1.2 4.4 2 2 3 5 5 5 0 Bacterial protein of unknown function (DUF948) COG2 PF06148.6 gi|336252630|ref|YP_004595737.1| - 0.022 14.6 24.7 0.046 13.5 1.7 4.2 2 2 1 3 3 3 0 COG (conserved oligomeric Golgi) complex component, COG2 Spectrin PF00435.16 gi|336252630|ref|YP_004595737.1| - 0.027 14.7 1.1 0.027 14.7 0.7 3.8 1 1 3 4 4 4 0 Spectrin repeat Spc7 PF08317.6 gi|336252630|ref|YP_004595737.1| - 0.085 11.4 24.5 0.14 10.7 1.2 3.1 1 1 1 3 3 3 0 Spc7 kinetochore protein DASH_Duo1 PF08651.5 gi|336252630|ref|YP_004595737.1| - 0.12 11.9 11.5 1.5 8.4 0.0 4.4 3 1 2 5 5 5 0 DASH complex subunit Duo1 TrbL PF04610.9 gi|336252630|ref|YP_004595737.1| - 0.14 11.8 4.7 2.3 7.8 0.1 3.1 2 1 0 3 3 3 0 TrbL/VirB6 plasmid conjugal transfer protein RmuC PF02646.11 gi|336252630|ref|YP_004595737.1| - 0.22 10.3 19.1 1.5 7.5 1.2 4.0 2 2 1 4 4 4 0 RmuC family Atg14 PF10186.4 gi|336252630|ref|YP_004595737.1| - 0.28 10.0 13.1 1.1 8.0 0.1 3.1 1 1 2 3 3 3 0 UV radiation resistance protein and autophagy-related subunit 14 BLOC1_2 PF10046.4 gi|336252630|ref|YP_004595737.1| - 0.38 10.9 27.0 3.4 7.8 0.5 4.9 2 2 2 4 4 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 GP41 PF00517.12 gi|336252630|ref|YP_004595737.1| - 0.39 10.2 5.9 1 8.8 0.0 3.3 2 2 2 4 4 4 0 Retroviral envelope protein Peptidase_M9_N PF08453.5 gi|336252630|ref|YP_004595737.1| - 0.41 9.9 6.8 0.38 10.0 0.6 3.2 1 1 1 3 3 3 0 Peptidase family M9 N-terminal Fib_alpha PF08702.5 gi|336252630|ref|YP_004595737.1| - 0.42 10.7 17.4 5.8 7.0 1.5 3.7 1 1 2 3 3 3 0 Fibrinogen alpha/beta chain family IncA PF04156.9 gi|336252630|ref|YP_004595737.1| - 0.55 9.8 19.3 0.21 11.1 1.7 2.9 1 1 1 2 2 2 0 IncA protein GLE1 PF07817.8 gi|336252630|ref|YP_004595737.1| - 0.69 8.7 6.2 3.4 6.5 2.1 2.7 2 1 0 2 2 2 0 GLE1-like protein Seryl_tRNA_N PF02403.17 gi|336252630|ref|YP_004595737.1| - 0.75 9.8 26.8 1.6 8.7 0.6 4.2 1 1 2 4 4 4 0 Seryl-tRNA synthetase N-terminal domain YjcZ PF13990.1 gi|336252630|ref|YP_004595737.1| - 0.75 8.8 10.1 3.5 6.6 0.3 2.5 1 1 0 2 2 2 0 YjcZ-like protein Sec5 PF15469.1 gi|336252630|ref|YP_004595737.1| - 0.93 9.1 10.1 0.17 11.5 2.4 2.5 1 1 1 2 2 2 0 Exocyst complex component Sec5 DASH_Dad1 PF08649.5 gi|336252630|ref|YP_004595737.1| - 1 9.1 6.4 3.7 7.3 0.3 3.5 3 0 0 3 3 3 0 DASH complex subunit Dad1 DivIVA PF05103.8 gi|336252630|ref|YP_004595737.1| - 1.3 9.0 31.7 9.1 6.3 10.2 4.3 1 1 1 3 3 3 0 DivIVA protein Prominin PF05478.6 gi|336252630|ref|YP_004595737.1| - 1.4 6.3 16.8 0.37 8.2 3.8 2.1 1 1 0 2 2 2 0 Prominin Laminin_I PF06008.9 gi|336252630|ref|YP_004595737.1| - 1.5 8.0 29.9 5.8 6.1 4.0 3.8 1 1 2 3 3 3 0 Laminin Domain I CorA PF01544.13 gi|336252630|ref|YP_004595737.1| - 2.2 7.2 14.0 2.3 7.1 2.4 2.5 1 1 2 3 3 3 0 CorA-like Mg2+ transporter protein Muted PF14942.1 gi|336252630|ref|YP_004595737.1| - 2.4 8.0 21.2 0.57 10.0 1.6 2.6 1 1 0 2 2 2 0 Organelle biogenesis, Muted-like protein DUF489 PF04356.7 gi|336252630|ref|YP_004595737.1| - 2.6 7.5 8.9 2.4 7.6 2.4 3.1 2 2 1 3 3 3 0 Protein of unknown function (DUF489) COG5 PF10392.4 gi|336252630|ref|YP_004595737.1| - 2.7 7.9 14.1 0.28 11.1 0.3 3.4 2 2 1 3 3 3 0 Golgi transport complex subunit 5 Fzo_mitofusin PF04799.8 gi|336252630|ref|YP_004595737.1| - 2.8 7.3 13.6 2.5 7.4 0.2 3.7 2 2 2 4 4 4 0 fzo-like conserved region Dor1 PF04124.7 gi|336252630|ref|YP_004595737.1| - 2.9 6.2 15.1 2.5 6.4 2.2 2.9 2 1 0 2 2 2 0 Dor1-like family DUF939_C PF11728.3 gi|336252630|ref|YP_004595737.1| - 3.1 7.6 12.4 6.3 6.5 0.1 3.9 2 2 1 4 4 4 0 DUF939 C-terminal domain STAT_alpha PF01017.15 gi|336252630|ref|YP_004595737.1| - 3.1 7.4 8.7 14 5.3 0.1 2.7 1 1 1 2 2 2 0 STAT protein, all-alpha domain APG17 PF04108.7 gi|336252630|ref|YP_004595737.1| - 4.3 6.0 24.6 47 2.6 2.4 3.1 1 1 1 2 2 2 0 Autophagy protein Apg17 Sec34 PF04136.10 gi|336252630|ref|YP_004595737.1| - 4.6 6.9 13.3 0.59 9.8 0.4 3.6 2 1 2 4 4 4 0 Sec34-like family DUF848 PF05852.6 gi|336252630|ref|YP_004595737.1| - 4.8 7.0 29.8 1.3 8.8 1.7 4.3 1 1 2 4 4 4 0 Gammaherpesvirus protein of unknown function (DUF848) TPR_MLP1_2 PF07926.7 gi|336252630|ref|YP_004595737.1| - 7.2 6.3 25.7 0.59 9.8 2.3 3.0 2 2 0 2 2 2 0 TPR/MLP1/MLP2-like protein TMPIT PF07851.8 gi|336252630|ref|YP_004595737.1| - 8.3 5.3 16.2 3.1 6.7 0.6 3.1 1 1 1 3 3 3 0 TMPIT-like protein T2SF PF00482.18 gi|336252630|ref|YP_004595737.1| - 9.2 6.1 8.4 2.8 7.8 0.7 3.0 2 1 2 4 4 4 0 Type II secretion system (T2SS), protein F GAS PF13851.1 gi|336252630|ref|YP_004595737.1| - 9.3 5.3 16.4 18 4.4 6.9 2.8 2 2 0 2 2 2 0 Growth-arrest specific micro-tubule binding Fer2 PF00111.22 gi|336252632|ref|YP_004595739.1| - 4e-15 55.3 0.4 5.4e-15 54.9 0.3 1.2 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.1 gi|336252632|ref|YP_004595739.1| - 0.054 13.3 0.1 0.071 12.9 0.1 1.2 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.1 gi|336252632|ref|YP_004595739.1| - 0.09 12.5 0.1 0.18 11.6 0.1 1.5 1 1 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain PHO4 PF01384.15 gi|336252633|ref|YP_004595740.1| - 8.3e-57 192.2 29.9 8.3e-57 192.2 20.7 1.7 2 0 0 2 2 2 1 Phosphate transporter family Usp PF00582.21 gi|336252634|ref|YP_004595741.1| - 6.5e-24 84.7 2.7 7.5e-24 84.5 1.9 1.1 1 0 0 1 1 1 1 Universal stress protein family AA_permease_2 PF13520.1 gi|336252635|ref|YP_004595742.1| - 4.5e-46 157.2 36.7 5.4e-46 156.9 25.4 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|336252635|ref|YP_004595742.1| - 2.2e-36 125.2 36.6 2.8e-36 124.8 25.4 1.2 1 0 0 1 1 1 1 Amino acid permease Spore_permease PF03845.8 gi|336252635|ref|YP_004595742.1| - 0.012 14.2 7.5 0.073 11.7 5.2 2.2 1 1 0 1 1 1 0 Spore germination protein AA_permease_C PF13906.1 gi|336252635|ref|YP_004595742.1| - 0.026 14.3 1.5 0.026 14.3 1.0 2.9 3 0 0 3 3 3 0 C-terminus of AA_permease Usp PF00582.21 gi|336252636|ref|YP_004595743.1| - 3.2e-06 27.3 5.2 1.2e-05 25.5 1.9 2.7 2 1 0 2 2 2 1 Universal stress protein family VWA_2 PF13519.1 gi|336252636|ref|YP_004595743.1| - 0.022 14.8 1.1 0.03 14.4 0.7 1.3 1 0 0 1 1 1 0 von Willebrand factor type A domain Usp PF00582.21 gi|336252637|ref|YP_004595744.1| - 6.2e-09 36.1 6.4 8.7e-09 35.7 3.5 1.8 2 0 0 2 2 2 1 Universal stress protein family PHO4 PF01384.15 gi|336252638|ref|YP_004595745.1| - 3.4e-59 200.1 25.5 3.4e-59 200.1 17.7 1.6 2 0 0 2 2 2 1 Phosphate transporter family SpoVS PF04232.7 gi|336252638|ref|YP_004595745.1| - 0.15 11.6 0.9 0.44 10.1 0.1 2.2 3 0 0 3 3 3 0 Stage V sporulation protein S (SpoVS) TCRP1 PF14944.1 gi|336252638|ref|YP_004595745.1| - 0.21 11.4 1.3 3.2 7.6 0.1 2.3 2 0 0 2 2 2 0 Tongue Cancer Chemotherapy Resistant Protein 1 ATP-cone PF03477.11 gi|336252639|ref|YP_004595746.1| - 0.085 13.2 1.7 0.13 12.6 1.2 1.3 1 0 0 1 1 1 0 ATP cone domain DUF3325 PF11804.3 gi|336252639|ref|YP_004595746.1| - 0.1 12.5 0.2 0.12 12.2 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3325) DUF1418 PF07214.7 gi|336252639|ref|YP_004595746.1| - 0.38 10.3 1.5 1.1 8.9 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1418) CitMHS PF03600.11 gi|336252640|ref|YP_004595747.1| - 2.9e-39 134.6 11.9 3.7e-39 134.3 8.3 1.1 1 0 0 1 1 1 1 Citrate transporter Na_sulph_symp PF00939.14 gi|336252640|ref|YP_004595747.1| - 2e-24 86.3 38.2 2.4e-16 59.6 13.6 3.1 2 1 1 3 3 3 3 Sodium:sulfate symporter transmembrane region TrkA_C PF02080.16 gi|336252640|ref|YP_004595747.1| - 2.3e-20 71.9 7.3 5.8e-12 45.0 0.7 2.4 2 0 0 2 2 2 2 TrkA-C domain His_biosynth PF00977.16 gi|336252641|ref|YP_004595748.1| - 4.9e-79 264.8 3.4 5.5e-79 264.6 2.4 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.12 gi|336252641|ref|YP_004595748.1| - 4e-13 48.8 0.1 1.2e-06 27.5 0.0 2.2 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) DHO_dh PF01180.16 gi|336252641|ref|YP_004595748.1| - 2.6e-12 46.3 0.8 2e-08 33.5 0.1 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase ThiG PF05690.9 gi|336252641|ref|YP_004595748.1| - 1.8e-10 40.3 5.3 9.9e-05 21.5 0.7 2.1 1 1 1 2 2 2 2 Thiazole biosynthesis protein ThiG PcrB PF01884.12 gi|336252641|ref|YP_004595748.1| - 2.2e-09 36.9 6.5 0.0002 20.6 0.1 2.8 2 1 1 3 3 3 2 PcrB family Trp_syntA PF00290.15 gi|336252641|ref|YP_004595748.1| - 1.2e-07 30.5 0.8 0.0038 15.8 0.1 2.2 2 0 0 2 2 2 2 Tryptophan synthase alpha chain IGPS PF00218.16 gi|336252641|ref|YP_004595748.1| - 2.4e-06 26.7 1.0 0.00063 18.8 0.0 3.2 2 2 2 4 4 4 1 Indole-3-glycerol phosphate synthase NMO PF03060.10 gi|336252641|ref|YP_004595748.1| - 6.7e-06 25.4 13.5 2e-05 23.9 3.4 2.2 1 1 1 2 2 2 2 Nitronate monooxygenase NanE PF04131.9 gi|336252641|ref|YP_004595748.1| - 2.7e-05 23.2 3.2 0.0064 15.4 0.3 2.6 1 1 2 3 3 3 2 Putative N-acetylmannosamine-6-phosphate epimerase TMP-TENI PF02581.12 gi|336252641|ref|YP_004595748.1| - 8.3e-05 21.7 3.4 0.003 16.6 0.4 2.2 2 0 0 2 2 2 2 Thiamine monophosphate synthase/TENI G3P_antiterm PF04309.7 gi|336252641|ref|YP_004595748.1| - 0.0002 20.4 2.0 0.00043 19.3 0.2 2.1 2 1 1 3 3 3 1 Glycerol-3-phosphate responsive antiterminator FMN_dh PF01070.13 gi|336252641|ref|YP_004595748.1| - 0.0015 17.4 11.4 0.014 14.2 1.4 2.2 2 0 0 2 2 2 2 FMN-dependent dehydrogenase IMPDH PF00478.20 gi|336252641|ref|YP_004595748.1| - 0.0026 16.7 4.3 0.059 12.2 2.0 2.1 1 1 1 2 2 2 1 IMP dehydrogenase / GMP reductase domain B12-binding PF02310.14 gi|336252641|ref|YP_004595748.1| - 0.015 15.1 7.1 0.74 9.6 0.1 2.8 1 1 2 3 3 3 0 B12 binding domain Ribul_P_3_epim PF00834.14 gi|336252641|ref|YP_004595748.1| - 0.021 13.9 1.4 0.13 11.3 0.1 2.3 2 1 0 2 2 2 0 Ribulose-phosphate 3 epimerase family PA PF02225.17 gi|336252641|ref|YP_004595748.1| - 0.039 13.6 1.7 2.7 7.7 0.3 2.4 1 1 1 2 2 2 0 PA domain QRPTase_C PF01729.14 gi|336252641|ref|YP_004595748.1| - 0.047 13.2 0.9 0.28 10.6 0.3 2.1 1 1 1 2 2 2 0 Quinolinate phosphoribosyl transferase, C-terminal domain PQQ PF01011.16 gi|336252641|ref|YP_004595748.1| - 0.084 12.4 0.0 0.39 10.3 0.0 2.0 2 0 0 2 2 2 0 PQQ enzyme repeat MFS_1 PF07690.11 gi|336252642|ref|YP_004595749.1| - 2.9e-34 118.3 56.5 1.7e-21 76.3 18.2 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF3482 PF11981.3 gi|336252642|ref|YP_004595749.1| - 7 5.7 5.5 9.2 5.4 3.3 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF3482) Copper-bind PF00127.15 gi|336252643|ref|YP_004595750.1| - 1.1e-07 31.9 0.0 1.9e-07 31.2 0.0 1.4 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Secretin_N_2 PF07655.8 gi|336252643|ref|YP_004595750.1| - 0.013 15.8 1.8 0.013 15.8 1.3 1.8 2 0 0 2 2 2 0 Secretin N-terminal domain TAT_signal PF10518.4 gi|336252643|ref|YP_004595750.1| - 0.015 15.2 5.5 0.024 14.6 3.8 1.3 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Spore_YtfJ PF09579.5 gi|336252643|ref|YP_004595750.1| - 0.42 10.4 4.5 0.69 9.8 3.1 1.4 1 0 0 1 1 1 0 Sporulation protein YtfJ (Spore_YtfJ) Aminotran_5 PF00266.14 gi|336252644|ref|YP_004595751.1| - 6.9e-29 100.7 0.0 8.9e-29 100.3 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Glyco_hydro_1 PF00232.13 gi|336252644|ref|YP_004595751.1| - 0.017 13.3 0.1 0.13 10.4 0.0 2.0 2 0 0 2 2 2 0 Glycosyl hydrolase family 1 Peptidase_S8 PF00082.17 gi|336252645|ref|YP_004595752.1| - 1.2e-52 178.8 3.0 1.7e-52 178.3 2.1 1.2 1 0 0 1 1 1 1 Subtilase family DUF3042 PF11240.3 gi|336252645|ref|YP_004595752.1| - 1.6 8.5 3.3 0.86 9.4 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3042) eIF-1a PF01176.14 gi|336252646|ref|YP_004595753.1| - 6.3e-29 99.1 0.3 8e-29 98.8 0.2 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 Sclerostin PF05463.6 gi|336252646|ref|YP_004595753.1| - 0.063 12.7 0.0 0.081 12.4 0.0 1.1 1 0 0 1 1 1 0 Sclerostin (SOST) TMEM125 PF15109.1 gi|336252647|ref|YP_004595754.1| - 0.047 13.7 1.0 0.053 13.6 0.7 1.1 1 0 0 1 1 1 0 TMEM125 protein family DUF4418 PF14387.1 gi|336252647|ref|YP_004595754.1| - 0.6 9.8 4.6 0.63 9.7 3.2 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4418) MS_channel PF00924.13 gi|336252647|ref|YP_004595754.1| - 2.2 7.5 10.1 2.4 7.4 7.0 1.0 1 0 0 1 1 1 0 Mechanosensitive ion channel Flp_Fap PF04964.9 gi|336252647|ref|YP_004595754.1| - 3.6 7.2 5.7 1 9.0 1.7 1.8 1 1 1 2 2 2 0 Flp/Fap pilin component COX14 PF14880.1 gi|336252648|ref|YP_004595755.1| - 0.57 9.8 2.6 1.3 8.7 1.8 1.5 1 0 0 1 1 1 0 Cytochrome oxidase c assembly DUF460 PF04312.8 gi|336252649|ref|YP_004595756.1| - 1.6e-51 173.4 0.3 7.1e-51 171.3 0.1 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF460) IncA PF04156.9 gi|336252649|ref|YP_004595756.1| - 7.9e-05 22.3 16.9 0.00019 21.1 11.7 1.6 1 0 0 1 1 1 1 IncA protein MAD PF05557.8 gi|336252649|ref|YP_004595756.1| - 0.0032 15.6 19.9 0.0051 14.9 13.8 1.2 1 0 0 1 1 1 1 Mitotic checkpoint protein DUF812 PF05667.6 gi|336252649|ref|YP_004595756.1| - 0.0073 14.8 10.1 0.015 13.8 7.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF812) AAA_13 PF13166.1 gi|336252649|ref|YP_004595756.1| - 0.011 14.2 7.1 0.016 13.7 4.9 1.1 1 0 0 1 1 1 0 AAA domain TMF_DNA_bd PF12329.3 gi|336252649|ref|YP_004595756.1| - 0.011 15.4 13.0 0.011 15.4 9.0 3.3 3 1 1 4 4 3 0 TATA element modulatory factor 1 DNA binding Exonuc_VII_L PF02601.10 gi|336252649|ref|YP_004595756.1| - 0.019 14.1 1.6 0.034 13.3 1.1 1.4 1 0 0 1 1 1 0 Exonuclease VII, large subunit Prefoldin PF02996.12 gi|336252649|ref|YP_004595756.1| - 0.057 13.0 7.2 0.29 10.7 1.8 2.6 2 0 0 2 2 2 0 Prefoldin subunit DUF2968 PF11180.3 gi|336252649|ref|YP_004595756.1| - 0.1 11.9 12.6 0.28 10.5 8.7 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF2968) TMF_TATA_bd PF12325.3 gi|336252649|ref|YP_004595756.1| - 0.13 11.9 23.1 0.21 11.3 4.5 2.7 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding V_ATPase_I PF01496.14 gi|336252649|ref|YP_004595756.1| - 0.15 9.9 10.9 0.24 9.1 7.6 1.3 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family LMBR1 PF04791.11 gi|336252649|ref|YP_004595756.1| - 0.19 10.2 3.0 0.27 9.7 2.1 1.2 1 0 0 1 1 1 0 LMBR1-like membrane protein DivIVA PF05103.8 gi|336252649|ref|YP_004595756.1| - 0.25 11.3 15.6 0.27 11.3 9.8 1.9 1 1 0 1 1 1 0 DivIVA protein bZIP_1 PF00170.16 gi|336252649|ref|YP_004595756.1| - 0.25 11.3 19.6 2.2 8.2 8.4 2.7 1 1 1 2 2 2 0 bZIP transcription factor GAS PF13851.1 gi|336252649|ref|YP_004595756.1| - 0.28 10.3 16.9 0.77 8.9 11.7 1.7 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding FlaC_arch PF05377.6 gi|336252649|ref|YP_004595756.1| - 0.28 11.0 6.2 5.7 6.9 1.0 2.8 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) NPV_P10 PF05531.7 gi|336252649|ref|YP_004595756.1| - 0.42 10.8 3.7 1.3 9.3 1.0 2.7 2 1 1 3 3 2 0 Nucleopolyhedrovirus P10 protein DUF342 PF03961.8 gi|336252649|ref|YP_004595756.1| - 0.64 8.3 7.5 1.2 7.4 5.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF342) Spc7 PF08317.6 gi|336252649|ref|YP_004595756.1| - 0.73 8.4 17.2 0.18 10.4 8.9 1.8 1 1 0 1 1 1 0 Spc7 kinetochore protein YPEB PF14620.1 gi|336252649|ref|YP_004595756.1| - 0.86 8.5 6.5 1.4 7.8 4.5 1.3 1 0 0 1 1 1 0 YpeB sporulation ATG16 PF08614.6 gi|336252649|ref|YP_004595756.1| - 0.95 9.2 25.5 0.4 10.4 7.2 2.6 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) DUF4407 PF14362.1 gi|336252649|ref|YP_004595756.1| - 1.4 7.8 11.4 4 6.3 7.9 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) ISG65-75 PF11727.3 gi|336252649|ref|YP_004595756.1| - 1.4 7.9 10.8 3.1 6.7 7.5 1.5 1 0 0 1 1 1 0 Invariant surface glycoprotein TBPIP PF07106.8 gi|336252649|ref|YP_004595756.1| - 1.5 8.3 17.0 0.6 9.6 6.9 2.1 1 1 1 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Fib_alpha PF08702.5 gi|336252649|ref|YP_004595756.1| - 1.6 8.8 8.0 0.85 9.7 2.4 2.2 1 1 2 3 3 3 0 Fibrinogen alpha/beta chain family FlaG PF03646.10 gi|336252649|ref|YP_004595756.1| - 1.6 8.8 13.1 1.3 9.2 2.8 2.6 2 0 0 2 2 2 0 FlaG protein CENP-F_leu_zip PF10473.4 gi|336252649|ref|YP_004595756.1| - 1.7 8.5 27.5 1.7 8.4 3.4 3.0 2 1 1 3 3 3 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF1664 PF07889.7 gi|336252649|ref|YP_004595756.1| - 1.9 8.2 12.1 4 7.2 2.1 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) OmpH PF03938.9 gi|336252649|ref|YP_004595756.1| - 2 8.3 9.7 4.5 7.2 6.8 1.6 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) Atg14 PF10186.4 gi|336252649|ref|YP_004595756.1| - 2.2 7.1 20.1 4.1 6.2 7.6 2.1 1 1 1 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 DUF641 PF04859.7 gi|336252649|ref|YP_004595756.1| - 2.4 7.9 14.9 0.38 10.5 3.8 2.7 1 1 1 2 2 2 0 Plant protein of unknown function (DUF641) PspB PF06667.7 gi|336252649|ref|YP_004595756.1| - 4.3 7.3 11.1 1.1 9.3 3.1 2.9 2 1 0 2 2 2 0 Phage shock protein B Phage_GP20 PF06810.6 gi|336252649|ref|YP_004595756.1| - 5.4 6.4 17.1 8.5 5.8 6.2 2.7 1 1 1 2 2 2 0 Phage minor structural protein GP20 BLOC1_2 PF10046.4 gi|336252649|ref|YP_004595756.1| - 5.4 7.2 9.7 2.3 8.3 2.4 2.6 1 1 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 AKNA PF12443.3 gi|336252649|ref|YP_004595756.1| - 8 6.5 10.4 1.5 8.8 3.3 2.2 1 1 1 2 2 2 0 AT-hook-containing transcription factor CorA PF01544.13 gi|336252649|ref|YP_004595756.1| - 9.6 5.1 8.7 9.2 5.1 4.7 1.8 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein Aldo_ket_red PF00248.16 gi|336252651|ref|YP_004595758.1| - 1.4e-73 247.1 0.0 1.6e-73 247.0 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family Lactamase_B_2 PF12706.2 gi|336252652|ref|YP_004595759.1| - 1e-30 106.7 0.0 1.4e-30 106.2 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|336252652|ref|YP_004595759.1| - 2.6e-13 50.0 3.9 4e-12 46.1 2.3 2.3 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily FmdA_AmdA PF03069.10 gi|336252652|ref|YP_004595759.1| - 0.053 12.1 0.0 0.071 11.7 0.0 1.2 1 0 0 1 1 1 0 Acetamidase/Formamidase family RmlD_sub_bind PF04321.12 gi|336252652|ref|YP_004595759.1| - 0.11 11.3 0.9 0.22 10.3 0.6 1.4 1 0 0 1 1 1 0 RmlD substrate binding domain DUF1034 PF06280.7 gi|336252653|ref|YP_004595760.1| - 0.059 13.7 9.7 0.81 10.1 1.2 3.5 1 1 3 4 4 4 0 Fn3-like domain (DUF1034) AAA PF00004.24 gi|336252654|ref|YP_004595761.1| - 4.7e-14 52.7 0.0 2.2e-13 50.5 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.1 gi|336252654|ref|YP_004595761.1| - 2.8e-12 46.5 0.0 4.5e-12 45.9 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase III, delta subunit Rep_fac_C PF08542.6 gi|336252654|ref|YP_004595761.1| - 4e-11 42.7 0.0 1e-10 41.4 0.0 1.7 1 0 0 1 1 1 1 Replication factor C C-terminal domain AAA_22 PF13401.1 gi|336252654|ref|YP_004595761.1| - 1.5e-07 31.5 0.0 4e-07 30.2 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_24 PF13479.1 gi|336252654|ref|YP_004595761.1| - 3.2e-06 26.8 0.0 4.7e-06 26.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|336252654|ref|YP_004595761.1| - 3.2e-06 27.0 0.0 6.8e-06 25.9 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|336252654|ref|YP_004595761.1| - 5.6e-06 26.4 0.2 0.00079 19.4 0.0 2.6 2 1 1 3 3 3 1 AAA ATPase domain Sigma54_activat PF00158.21 gi|336252654|ref|YP_004595761.1| - 1.3e-05 24.7 0.0 0.00045 19.7 0.0 2.6 3 0 0 3 3 3 1 Sigma-54 interaction domain AAA_19 PF13245.1 gi|336252654|ref|YP_004595761.1| - 1.7e-05 24.4 0.0 5.4e-05 22.8 0.0 1.9 2 0 0 2 2 2 1 Part of AAA domain AAA_17 PF13207.1 gi|336252654|ref|YP_004595761.1| - 2.6e-05 25.0 0.3 0.00017 22.3 0.0 2.6 1 1 1 2 2 2 1 AAA domain Zeta_toxin PF06414.7 gi|336252654|ref|YP_004595761.1| - 4.1e-05 22.7 0.2 0.00024 20.2 0.1 2.0 1 1 0 1 1 1 1 Zeta toxin AAA_18 PF13238.1 gi|336252654|ref|YP_004595761.1| - 4.6e-05 23.7 0.0 0.0001 22.5 0.0 1.7 1 1 0 1 1 1 1 AAA domain Mg_chelatase PF01078.16 gi|336252654|ref|YP_004595761.1| - 7.8e-05 21.9 0.0 0.00013 21.2 0.0 1.3 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_5 PF07728.9 gi|336252654|ref|YP_004595761.1| - 0.00015 21.5 2.0 0.0012 18.6 0.3 2.8 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) Sigma54_activ_2 PF14532.1 gi|336252654|ref|YP_004595761.1| - 0.00019 21.5 0.0 0.0062 16.5 0.0 2.2 2 0 0 2 2 2 1 Sigma-54 interaction domain NACHT PF05729.7 gi|336252654|ref|YP_004595761.1| - 0.00023 20.8 0.0 0.00059 19.5 0.0 1.8 1 0 0 1 1 1 1 NACHT domain T2SE PF00437.15 gi|336252654|ref|YP_004595761.1| - 0.0011 17.9 0.0 0.0025 16.7 0.0 1.6 1 0 0 1 1 1 1 Type II/IV secretion system protein IstB_IS21 PF01695.12 gi|336252654|ref|YP_004595761.1| - 0.0033 16.8 0.0 0.0071 15.7 0.0 1.6 1 0 0 1 1 1 1 IstB-like ATP binding protein TIP49 PF06068.8 gi|336252654|ref|YP_004595761.1| - 0.004 15.9 0.0 0.064 11.9 0.0 2.2 2 0 0 2 2 2 1 TIP49 C-terminus AAA_11 PF13086.1 gi|336252654|ref|YP_004595761.1| - 0.0052 16.3 0.0 0.0081 15.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_2 PF07724.9 gi|336252654|ref|YP_004595761.1| - 0.0068 16.3 0.0 0.015 15.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_33 PF13671.1 gi|336252654|ref|YP_004595761.1| - 0.0077 16.1 0.0 0.015 15.1 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|336252654|ref|YP_004595761.1| - 0.0083 15.5 0.0 3.9 6.8 0.0 2.5 2 0 0 2 2 2 1 AAA domain RuvB_N PF05496.7 gi|336252654|ref|YP_004595761.1| - 0.0089 15.0 0.0 0.082 11.9 0.0 2.2 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus Bac_DnaA PF00308.13 gi|336252654|ref|YP_004595761.1| - 0.023 14.3 0.0 0.17 11.5 0.0 2.1 1 1 0 2 2 2 0 Bacterial dnaA protein DEAD PF00270.24 gi|336252654|ref|YP_004595761.1| - 0.03 13.8 0.2 2.6 7.4 0.0 2.3 1 1 0 2 2 2 0 DEAD/DEAH box helicase Rad17 PF03215.10 gi|336252654|ref|YP_004595761.1| - 0.032 12.9 0.0 0.065 11.9 0.0 1.5 2 0 0 2 2 2 0 Rad17 cell cycle checkpoint protein FtsK_SpoIIIE PF01580.13 gi|336252654|ref|YP_004595761.1| - 0.037 13.5 0.0 0.13 11.7 0.0 1.9 3 0 0 3 3 3 0 FtsK/SpoIIIE family AAA_30 PF13604.1 gi|336252654|ref|YP_004595761.1| - 0.055 13.0 0.0 0.096 12.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|336252654|ref|YP_004595761.1| - 0.089 11.6 0.0 0.18 10.6 0.0 1.5 1 1 0 1 1 1 0 NB-ARC domain Metal_resist PF13801.1 gi|336252654|ref|YP_004595761.1| - 0.51 10.3 4.6 0.79 9.7 0.2 2.8 3 0 0 3 3 3 0 Heavy-metal resistance 4HBT PF03061.17 gi|336252655|ref|YP_004595762.1| - 2.4e-18 65.9 0.0 3.7e-18 65.4 0.0 1.3 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_2 PF13279.1 gi|336252655|ref|YP_004595762.1| - 1.1e-05 25.9 0.0 1.3e-05 25.6 0.0 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily TrmB PF01978.14 gi|336252656|ref|YP_004595763.1| - 2.7e-17 62.2 0.0 9e-17 60.5 0.0 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Regulator_TrmB PF11495.3 gi|336252656|ref|YP_004595763.1| - 1.3e-08 34.1 0.0 1.9e-08 33.5 0.0 1.3 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB HTH_27 PF13463.1 gi|336252656|ref|YP_004595763.1| - 0.00072 19.8 1.8 0.084 13.2 0.1 3.3 2 1 2 4 4 4 1 Winged helix DNA-binding domain HRDC PF00570.18 gi|336252656|ref|YP_004595763.1| - 0.0066 16.1 0.1 4.8 6.9 0.0 3.3 3 0 0 3 3 3 1 HRDC domain MarR_2 PF12802.2 gi|336252656|ref|YP_004595763.1| - 0.012 15.2 0.1 0.029 14.0 0.1 1.7 1 0 0 1 1 1 0 MarR family HTH_IclR PF09339.5 gi|336252656|ref|YP_004595763.1| - 0.028 13.9 0.2 1.5 8.4 0.0 2.7 2 0 0 2 2 2 0 IclR helix-turn-helix domain Zot PF05707.7 gi|336252656|ref|YP_004595763.1| - 0.032 13.7 0.6 0.12 11.8 0.0 2.0 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) Radical_SAM PF04055.16 gi|336252656|ref|YP_004595763.1| - 0.072 13.2 0.3 5.5 7.1 0.0 2.2 1 1 0 2 2 2 0 Radical SAM superfamily ESCRT-II PF05871.7 gi|336252656|ref|YP_004595763.1| - 0.073 12.9 0.1 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 ESCRT-II complex subunit UPF0020 PF01170.13 gi|336252657|ref|YP_004595764.1| - 2.4e-25 89.1 0.0 5.4e-25 88.0 0.0 1.6 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_26 PF13659.1 gi|336252657|ref|YP_004595764.1| - 1.1e-10 41.5 1.9 1.9e-10 40.7 0.2 2.0 2 0 0 2 2 2 1 Methyltransferase domain THUMP PF02926.12 gi|336252657|ref|YP_004595764.1| - 1.8e-05 24.6 0.0 7.6e-05 22.6 0.0 1.9 1 1 0 1 1 1 1 THUMP domain Methyltransf_11 PF08241.7 gi|336252657|ref|YP_004595764.1| - 0.00027 21.3 0.0 0.00066 20.1 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|336252657|ref|YP_004595764.1| - 0.002 18.6 0.1 0.0043 17.6 0.1 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|336252657|ref|YP_004595764.1| - 0.0085 15.6 0.0 0.03 13.9 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|336252657|ref|YP_004595764.1| - 0.089 12.3 0.0 0.13 11.7 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase TBP PF00352.16 gi|336252658|ref|YP_004595765.1| - 7.2e-66 217.5 0.0 8.3e-32 108.4 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.3 gi|336252658|ref|YP_004595765.1| - 0.011 15.7 0.0 1.4 9.0 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF3378) CENP-F_C_Rb_bdg PF10490.4 gi|336252658|ref|YP_004595765.1| - 0.031 13.6 0.6 8.4 5.8 0.0 2.4 2 0 0 2 2 2 0 Rb-binding domain of kinetochore protein Cenp-F/LEK1 DUF3773 PF12608.3 gi|336252658|ref|YP_004595765.1| - 0.038 14.0 0.0 0.23 11.5 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3773) Ion_trans_2 PF07885.11 gi|336252659|ref|YP_004595766.1| - 5.3e-05 22.8 8.6 5.3e-05 22.8 6.0 1.7 2 0 0 2 2 2 1 Ion channel MarR PF01047.17 gi|336252660|ref|YP_004595767.1| - 2.4e-06 27.1 0.0 3.2e-06 26.7 0.0 1.2 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|336252660|ref|YP_004595767.1| - 4.5e-06 26.2 0.0 5.2e-06 26.0 0.0 1.2 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.14 gi|336252660|ref|YP_004595767.1| - 7.2e-05 22.6 0.0 0.00012 21.9 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_11 PF08279.7 gi|336252660|ref|YP_004595767.1| - 0.0023 17.5 0.0 0.0026 17.3 0.0 1.2 1 0 0 1 1 1 1 HTH domain HTH_IclR PF09339.5 gi|336252660|ref|YP_004595767.1| - 0.003 17.1 0.6 0.0071 15.9 0.0 1.7 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_27 PF13463.1 gi|336252660|ref|YP_004595767.1| - 0.0082 16.4 0.0 0.0098 16.1 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain RPA_C PF08784.6 gi|336252660|ref|YP_004595767.1| - 0.059 13.7 0.0 0.067 13.6 0.0 1.1 1 0 0 1 1 1 0 Replication protein A C terminal Mrr_N PF14338.1 gi|336252660|ref|YP_004595767.1| - 0.086 12.9 0.0 0.15 12.1 0.0 1.4 2 0 0 2 2 2 0 Mrr N-terminal domain TrmB PF01978.14 gi|336252660|ref|YP_004595767.1| - 0.13 11.9 0.0 0.18 11.5 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HisG PF01634.13 gi|336252662|ref|YP_004595769.1| - 5.5e-49 165.8 0.1 8.1e-49 165.3 0.1 1.2 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.6 gi|336252662|ref|YP_004595769.1| - 1.7e-24 85.5 0.1 4e-24 84.3 0.1 1.7 1 0 0 1 1 1 1 HisG, C-terminal domain NMT1 PF09084.6 gi|336252662|ref|YP_004595769.1| - 0.00041 20.0 0.0 0.0073 15.9 0.0 2.5 2 1 0 2 2 2 1 NMT1/THI5 like Phosphonate-bd PF12974.2 gi|336252662|ref|YP_004595769.1| - 0.023 14.0 0.1 0.068 12.5 0.0 1.8 2 1 0 2 2 2 0 ABC transporter, phosphonate, periplasmic substrate-binding protein LysR_substrate PF03466.15 gi|336252662|ref|YP_004595769.1| - 0.043 12.9 0.2 0.064 12.3 0.1 1.3 1 0 0 1 1 1 0 LysR substrate binding domain FRD2 PF03197.8 gi|336252662|ref|YP_004595769.1| - 0.051 14.1 0.0 0.5 10.9 0.0 2.3 2 0 0 2 2 2 0 Bacteriophage FRD2 protein DUF881 PF05949.7 gi|336252662|ref|YP_004595769.1| - 0.053 12.9 0.3 0.089 12.2 0.2 1.4 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF881) E1-E2_ATPase PF00122.15 gi|336252664|ref|YP_004595771.1| - 5.4e-50 169.5 4.2 1.4e-49 168.2 0.5 2.4 2 1 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.21 gi|336252664|ref|YP_004595771.1| - 8.4e-44 150.5 7.0 1.8e-43 149.4 4.9 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|336252664|ref|YP_004595771.1| - 7.7e-17 62.0 0.1 1.5e-16 61.0 0.1 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|336252664|ref|YP_004595771.1| - 0.0001 22.0 0.0 0.0024 17.5 0.0 2.2 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase NCU-G1 PF15065.1 gi|336252664|ref|YP_004595771.1| - 0.024 13.3 0.8 0.043 12.5 0.6 1.3 1 0 0 1 1 1 0 Lysosomal transcription factor, NCU-G1 KaiC PF06745.8 gi|336252665|ref|YP_004595772.1| - 1.7e-45 154.9 0.0 1.9e-45 154.7 0.0 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|336252665|ref|YP_004595772.1| - 2.9e-10 39.8 0.0 4.9e-10 39.1 0.0 1.3 1 1 0 1 1 1 1 AAA domain GvpD PF07088.6 gi|336252665|ref|YP_004595772.1| - 1e-08 33.9 0.1 2.2e-07 29.5 0.0 2.8 1 1 0 1 1 1 1 GvpD gas vesicle protein AAA_22 PF13401.1 gi|336252665|ref|YP_004595772.1| - 1.3e-05 25.3 0.0 3.3e-05 24.0 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|336252665|ref|YP_004595772.1| - 0.00021 21.1 0.0 0.00054 19.8 0.0 1.7 1 1 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|336252665|ref|YP_004595772.1| - 0.00025 20.8 0.0 0.00034 20.3 0.0 1.2 1 0 0 1 1 1 1 Archaeal ATPase AAA_17 PF13207.1 gi|336252665|ref|YP_004595772.1| - 0.00027 21.7 0.0 0.0008 20.2 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|336252665|ref|YP_004595772.1| - 0.00053 19.6 0.1 0.0012 18.5 0.0 1.5 1 0 0 1 1 1 1 Part of AAA domain AAA_14 PF13173.1 gi|336252665|ref|YP_004595772.1| - 0.00057 19.7 0.0 0.0023 17.8 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA PF00004.24 gi|336252665|ref|YP_004595772.1| - 0.00089 19.4 0.2 0.012 15.8 0.0 2.1 1 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) DnaB_C PF03796.10 gi|336252665|ref|YP_004595772.1| - 0.0014 17.5 0.0 0.0023 16.8 0.0 1.4 2 0 0 2 2 2 1 DnaB-like helicase C terminal domain AAA_18 PF13238.1 gi|336252665|ref|YP_004595772.1| - 0.0016 18.7 0.0 0.0037 17.5 0.0 1.6 1 1 0 1 1 1 1 AAA domain ATP_bind_1 PF03029.12 gi|336252665|ref|YP_004595772.1| - 0.0087 15.6 0.5 0.022 14.3 0.0 1.9 2 1 1 3 3 3 1 Conserved hypothetical ATP binding protein AAA_10 PF12846.2 gi|336252665|ref|YP_004595772.1| - 0.027 13.9 0.0 0.035 13.5 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain NACHT PF05729.7 gi|336252665|ref|YP_004595772.1| - 0.03 14.0 0.0 0.048 13.3 0.0 1.4 1 0 0 1 1 1 0 NACHT domain Miro PF08477.8 gi|336252665|ref|YP_004595772.1| - 0.032 14.7 0.1 1.5 9.3 0.0 2.3 2 0 0 2 2 2 0 Miro-like protein RecA PF00154.16 gi|336252665|ref|YP_004595772.1| - 0.041 12.9 0.0 0.29 10.1 0.0 2.1 2 0 0 2 2 2 0 recA bacterial DNA recombination protein MobB PF03205.9 gi|336252665|ref|YP_004595772.1| - 0.048 13.3 0.0 0.12 12.1 0.0 1.7 2 0 0 2 2 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_24 PF13479.1 gi|336252665|ref|YP_004595772.1| - 0.057 12.9 0.0 0.12 11.9 0.0 1.5 2 0 0 2 2 2 0 AAA domain T2SE PF00437.15 gi|336252665|ref|YP_004595772.1| - 0.058 12.2 0.0 0.097 11.5 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein Zeta_toxin PF06414.7 gi|336252665|ref|YP_004595772.1| - 0.06 12.4 0.0 0.2 10.7 0.0 1.7 2 0 0 2 2 2 0 Zeta toxin NTPase_1 PF03266.10 gi|336252665|ref|YP_004595772.1| - 0.064 12.9 0.0 0.12 12.1 0.0 1.5 1 0 0 1 1 1 0 NTPase IstB_IS21 PF01695.12 gi|336252665|ref|YP_004595772.1| - 0.066 12.6 0.0 0.11 11.9 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein DEAD PF00270.24 gi|336252665|ref|YP_004595772.1| - 0.07 12.6 0.1 0.35 10.3 0.1 1.8 1 1 0 1 1 1 0 DEAD/DEAH box helicase cobW PF02492.14 gi|336252665|ref|YP_004595772.1| - 0.072 12.5 0.1 0.16 11.4 0.0 1.6 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_28 PF13521.1 gi|336252665|ref|YP_004595772.1| - 0.078 12.9 0.1 0.55 10.1 0.0 2.0 1 1 2 3 3 3 0 AAA domain Viral_helicase1 PF01443.13 gi|336252665|ref|YP_004595772.1| - 0.081 12.4 0.0 0.19 11.2 0.0 1.6 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase AAA_16 PF13191.1 gi|336252665|ref|YP_004595772.1| - 0.082 12.8 0.1 0.19 11.7 0.0 1.5 2 0 0 2 2 1 0 AAA ATPase domain KTI12 PF08433.5 gi|336252665|ref|YP_004595772.1| - 0.11 11.7 0.0 0.17 11.0 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 RNA_helicase PF00910.17 gi|336252665|ref|YP_004595772.1| - 0.11 12.7 0.0 0.17 12.0 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_31 PF13614.1 gi|336252665|ref|YP_004595772.1| - 0.12 12.3 0.1 0.42 10.5 0.0 1.9 1 1 0 1 1 1 0 AAA domain DUF2075 PF09848.4 gi|336252665|ref|YP_004595772.1| - 0.13 11.2 0.0 0.17 10.8 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) TRP PF06011.7 gi|336252667|ref|YP_004595774.1| - 0.018 13.6 0.8 0.02 13.4 0.6 1.0 1 0 0 1 1 1 0 Transient receptor potential (TRP) ion channel DUF2231 PF09990.4 gi|336252667|ref|YP_004595774.1| - 0.033 14.5 0.7 0.043 14.1 0.5 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2231) DUF4131 PF13567.1 gi|336252667|ref|YP_004595774.1| - 0.23 10.8 1.2 0.29 10.5 0.8 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF95 PF01944.12 gi|336252668|ref|YP_004595775.1| - 5.6e-26 91.2 17.5 5.6e-26 91.2 12.2 1.6 2 0 0 2 2 2 1 Integral membrane protein DUF95 Amidohydro_1 PF01979.15 gi|336252669|ref|YP_004595776.1| - 1.9e-44 152.6 4.6 2.5e-44 152.2 3.2 1.2 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|336252669|ref|YP_004595776.1| - 4.6e-12 46.5 20.7 4.6e-12 46.5 14.4 2.3 2 1 0 2 2 2 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|336252669|ref|YP_004595776.1| - 2.9e-11 43.2 17.5 3.3e-10 39.7 8.2 2.7 1 1 1 2 2 2 2 Amidohydrolase family Amidohydro_5 PF13594.1 gi|336252669|ref|YP_004595776.1| - 3.2e-10 39.6 0.2 6.4e-09 35.5 0.0 2.9 3 0 0 3 3 3 1 Amidohydrolase A_deaminase PF00962.17 gi|336252669|ref|YP_004595776.1| - 0.00087 18.3 0.0 0.0015 17.5 0.0 1.4 1 0 0 1 1 1 1 Adenosine/AMP deaminase CYTH PF01928.16 gi|336252669|ref|YP_004595776.1| - 0.0028 17.3 0.0 0.0056 16.3 0.0 1.6 1 0 0 1 1 1 1 CYTH domain GIDE PF12483.3 gi|336252669|ref|YP_004595776.1| - 0.14 11.4 0.0 0.3 10.4 0.0 1.4 1 0 0 1 1 1 0 E3 Ubiquitin ligase Nitr_red_bet_C PF14711.1 gi|336252669|ref|YP_004595776.1| - 0.15 11.5 0.7 1.4 8.5 0.1 2.5 3 0 0 3 3 3 0 Respiratory nitrate reductase beta C-terminal CarboxypepD_reg PF13620.1 gi|336252670|ref|YP_004595777.1| - 0.0024 17.8 5.4 0.0064 16.5 3.8 1.7 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain DUF824 PF05688.6 gi|336252670|ref|YP_004595777.1| - 0.0046 16.5 0.5 0.012 15.2 0.3 1.6 1 0 0 1 1 1 1 Salmonella repeat of unknown function (DUF824) YtkA PF13115.1 gi|336252670|ref|YP_004595777.1| - 0.12 12.7 4.7 0.13 12.6 1.4 2.3 1 1 1 2 2 2 0 YtkA-like Big_1 PF02369.11 gi|336252670|ref|YP_004595777.1| - 0.29 11.0 16.5 0.48 10.3 11.4 1.3 1 0 0 1 1 1 0 Bacterial Ig-like domain (group 1) AdoHcyase PF05221.12 gi|336252671|ref|YP_004595778.1| - 5e-53 179.7 0.0 5.8e-53 179.5 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.16 gi|336252671|ref|YP_004595778.1| - 4.1e-48 163.2 1.1 8.7e-48 162.2 0.3 1.8 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|336252671|ref|YP_004595778.1| - 5.2e-10 38.7 0.1 9.8e-10 37.8 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.7 gi|336252671|ref|YP_004595778.1| - 8.5e-06 25.2 0.1 2.3e-05 23.8 0.1 1.7 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain TrkA_N PF02254.13 gi|336252671|ref|YP_004595778.1| - 0.0078 16.2 0.1 0.018 15.0 0.1 1.6 1 0 0 1 1 1 1 TrkA-N domain adh_short_C2 PF13561.1 gi|336252671|ref|YP_004595778.1| - 0.0092 15.7 0.1 0.9 9.2 0.0 2.3 2 0 0 2 2 2 1 Enoyl-(Acyl carrier protein) reductase ParBc PF02195.13 gi|336252671|ref|YP_004595778.1| - 0.096 12.7 0.0 0.58 10.3 0.0 2.3 2 0 0 2 2 2 0 ParB-like nuclease domain PAS_9 PF13426.1 gi|336252673|ref|YP_004595780.1| - 3.8e-12 46.4 0.0 7.9e-12 45.4 0.0 1.5 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.5 gi|336252673|ref|YP_004595780.1| - 5e-11 42.6 0.3 1.6e-10 40.9 0.2 1.8 1 0 0 1 1 1 1 PAS fold Response_reg PF00072.19 gi|336252673|ref|YP_004595780.1| - 0.00061 19.7 0.0 0.0012 18.8 0.0 1.5 1 0 0 1 1 1 1 Response regulator receiver domain OKR_DC_1_N PF03709.10 gi|336252673|ref|YP_004595780.1| - 0.052 13.6 0.0 0.11 12.5 0.0 1.5 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain IstB_IS21 PF01695.12 gi|336252673|ref|YP_004595780.1| - 0.055 12.8 0.0 0.17 11.3 0.0 1.6 2 0 0 2 2 2 0 IstB-like ATP binding protein PAS PF00989.19 gi|336252673|ref|YP_004595780.1| - 0.12 12.1 0.0 0.24 11.1 0.0 1.5 1 0 0 1 1 1 0 PAS fold HEAT_2 PF13646.1 gi|336252673|ref|YP_004595780.1| - 0.59 10.4 6.6 2.3 8.5 2.1 2.8 2 1 0 2 2 2 0 HEAT repeats PAS_9 PF13426.1 gi|336252675|ref|YP_004595782.1| - 1.7e-66 221.1 6.6 4.9e-16 59.0 0.0 6.6 6 0 0 6 6 6 6 PAS domain PAS_3 PF08447.6 gi|336252675|ref|YP_004595782.1| - 1.2e-63 211.1 7.8 1.8e-19 69.5 0.1 6.6 6 0 0 6 6 6 6 PAS fold PAS_4 PF08448.5 gi|336252675|ref|YP_004595782.1| - 9.5e-54 180.1 32.0 6.6e-18 64.7 0.1 7.1 7 0 0 7 7 6 6 PAS fold PAS PF00989.19 gi|336252675|ref|YP_004595782.1| - 1.6e-46 156.7 4.1 1.1e-19 70.2 0.0 6.0 6 0 0 6 6 6 4 PAS fold GAF_2 PF13185.1 gi|336252675|ref|YP_004595782.1| - 2.5e-21 76.6 15.1 8.2e-14 52.3 0.4 5.6 5 1 0 5 5 5 2 GAF domain PAS_8 PF13188.1 gi|336252675|ref|YP_004595782.1| - 2.6e-21 74.6 3.9 7.1e-09 35.2 0.0 4.9 5 0 0 5 5 5 3 PAS domain GAF_3 PF13492.1 gi|336252675|ref|YP_004595782.1| - 6.3e-20 71.5 2.7 3.6e-05 23.8 0.0 4.9 4 0 0 4 4 4 4 GAF domain HTH_10 PF04967.7 gi|336252675|ref|YP_004595782.1| - 4.9e-16 58.0 0.0 1.2e-15 56.7 0.0 1.7 1 0 0 1 1 1 1 HTH DNA binding domain PAS_10 PF13596.1 gi|336252675|ref|YP_004595782.1| - 5.9e-06 26.4 0.0 5e-05 23.5 0.0 2.6 2 0 0 2 2 2 1 PAS domain PAS_7 PF12860.2 gi|336252675|ref|YP_004595782.1| - 2.1e-05 24.5 14.4 0.53 10.3 0.1 8.1 8 2 0 8 8 7 1 PAS fold PAS_11 PF14598.1 gi|336252675|ref|YP_004595782.1| - 0.0031 17.4 0.0 0.44 10.5 0.0 3.3 3 0 0 3 3 3 1 PAS domain DUF2111 PF09884.4 gi|336252675|ref|YP_004595782.1| - 0.0092 15.7 0.0 0.021 14.6 0.0 1.6 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2111) HTH_5 PF01022.15 gi|336252675|ref|YP_004595782.1| - 0.077 12.6 0.0 0.21 11.3 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Abi PF02517.11 gi|336252676|ref|YP_004595783.1| - 7.4e-17 61.2 4.7 7.4e-17 61.2 3.3 2.7 2 1 1 3 3 3 1 CAAX protease self-immunity VIT1 PF01988.14 gi|336252676|ref|YP_004595783.1| - 7.9 5.9 14.4 5.6 6.3 3.8 2.3 2 0 0 2 2 2 0 VIT family Hjc PF01870.13 gi|336252677|ref|YP_004595784.1| - 2.4e-28 97.5 0.0 3.3e-28 97.1 0.0 1.2 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) NHL PF01436.16 gi|336252677|ref|YP_004595784.1| - 0.044 13.7 0.0 0.091 12.7 0.0 1.5 1 0 0 1 1 1 0 NHL repeat DUF2628 PF10947.3 gi|336252678|ref|YP_004595785.1| - 0.18 11.6 1.5 1.1 9.1 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2628) SWIM PF04434.12 gi|336252679|ref|YP_004595786.1| - 0.00025 20.4 0.6 0.00052 19.4 0.0 1.8 2 0 0 2 2 2 1 SWIM zinc finger DUF3341 PF11821.3 gi|336252680|ref|YP_004595787.1| - 0.00062 19.2 0.3 0.00069 19.1 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3341) PQQ_2 PF13360.1 gi|336252682|ref|YP_004595789.1| - 1.1e-44 152.7 8.5 2e-20 73.3 1.2 3.2 1 1 2 3 3 3 3 PQQ-like domain PQQ_3 PF13570.1 gi|336252682|ref|YP_004595789.1| - 5e-41 137.8 31.8 2e-08 34.2 0.0 8.2 8 0 0 8 8 8 8 PQQ-like domain PQQ PF01011.16 gi|336252682|ref|YP_004595789.1| - 2.7e-24 83.4 10.7 1.5e-06 27.4 0.0 7.7 8 0 0 8 8 8 6 PQQ enzyme repeat Rad51 PF08423.6 gi|336252683|ref|YP_004595790.1| - 2.5e-79 265.8 0.1 6.1e-48 162.9 0.0 2.0 1 1 1 2 2 2 2 Rad51 HHH_5 PF14520.1 gi|336252683|ref|YP_004595790.1| - 4.7e-12 45.8 0.0 2e-11 43.8 0.0 2.1 1 0 0 1 1 1 1 Helix-hairpin-helix domain AAA_25 PF13481.1 gi|336252683|ref|YP_004595790.1| - 1.3e-09 37.7 0.2 2.9e-09 36.6 0.1 1.6 1 1 0 1 1 1 1 AAA domain RecA PF00154.16 gi|336252683|ref|YP_004595790.1| - 7.3e-08 31.8 0.0 0.004 16.2 0.0 2.1 1 1 0 2 2 2 2 recA bacterial DNA recombination protein HHH PF00633.18 gi|336252683|ref|YP_004595790.1| - 3e-07 29.7 0.8 0.0014 18.2 0.1 2.9 3 0 0 3 3 3 2 Helix-hairpin-helix motif HHH_2 PF12826.2 gi|336252683|ref|YP_004595790.1| - 1.6e-06 27.9 0.1 7.6e-06 25.7 0.0 2.2 2 0 0 2 2 2 1 Helix-hairpin-helix motif Cdd1 PF11731.3 gi|336252683|ref|YP_004595790.1| - 5.8e-05 22.9 0.0 0.0002 21.2 0.0 2.0 2 0 0 2 2 2 1 Pathogenicity locus KaiC PF06745.8 gi|336252683|ref|YP_004595790.1| - 0.00016 20.8 0.2 0.0011 18.1 0.0 2.1 2 0 0 2 2 2 1 KaiC DUF4332 PF14229.1 gi|336252683|ref|YP_004595790.1| - 0.0023 17.8 0.0 0.0059 16.5 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4332) DNA_pol_lambd_f PF10391.4 gi|336252683|ref|YP_004595790.1| - 0.0036 16.8 0.0 0.016 14.7 0.0 2.1 1 1 1 2 2 2 1 Fingers domain of DNA polymerase lambda AAA_22 PF13401.1 gi|336252683|ref|YP_004595790.1| - 0.0044 17.1 0.7 0.021 14.9 0.5 2.1 1 1 0 1 1 1 1 AAA domain HHH_3 PF12836.2 gi|336252683|ref|YP_004595790.1| - 0.014 15.3 0.0 6 6.8 0.0 3.2 2 1 1 3 3 3 0 Helix-hairpin-helix motif IMS_HHH PF11798.3 gi|336252683|ref|YP_004595790.1| - 0.017 15.1 0.0 0.093 12.8 0.0 2.3 2 0 0 2 2 2 0 IMS family HHH motif Arch_ATPase PF01637.13 gi|336252683|ref|YP_004595790.1| - 0.1 12.3 0.0 0.13 11.8 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase NifU_N PF01592.11 gi|336252685|ref|YP_004595792.1| - 4e-25 88.1 0.1 5e-25 87.8 0.1 1.1 1 0 0 1 1 1 1 NifU-like N terminal domain SufE PF02657.10 gi|336252685|ref|YP_004595792.1| - 0.0048 16.5 0.0 0.0068 16.0 0.0 1.2 1 0 0 1 1 1 1 Fe-S metabolism associated domain HNOB PF07700.10 gi|336252686|ref|YP_004595793.1| - 2.3e-27 95.6 0.0 2.6e-27 95.4 0.0 1.0 1 0 0 1 1 1 1 Heme NO binding V4R PF02830.13 gi|336252686|ref|YP_004595793.1| - 1.2e-06 28.2 0.1 2e-06 27.5 0.0 1.3 1 0 0 1 1 1 1 V4R domain VirB3 PF05101.8 gi|336252687|ref|YP_004595794.1| - 0.081 12.9 0.9 0.092 12.7 0.6 1.1 1 0 0 1 1 1 0 Type IV secretory pathway, VirB3-like protein DUF4257 PF14074.1 gi|336252687|ref|YP_004595794.1| - 1.2 8.8 4.4 1.4 8.6 3.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4257) DUF4337 PF14235.1 gi|336252687|ref|YP_004595794.1| - 5.3 6.8 5.4 6.1 6.6 3.8 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4337) N_methyl_2 PF13544.1 gi|336252687|ref|YP_004595794.1| - 5.3 6.6 8.2 1.7 8.2 2.9 2.2 1 1 1 2 2 2 0 Type IV pilin N-term methylation site GFxxxE SseC PF04888.7 gi|336252687|ref|YP_004595794.1| - 7.9 5.7 6.9 9.6 5.4 4.8 1.1 1 0 0 1 1 1 0 Secretion system effector C (SseC) like family HD PF01966.17 gi|336252688|ref|YP_004595795.1| - 2.5e-13 50.1 3.7 4.8e-13 49.1 2.6 1.4 1 0 0 1 1 1 1 HD domain HTH_20 PF12840.2 gi|336252689|ref|YP_004595796.1| - 0.036 13.8 0.0 4.2 7.2 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain Aminotran_5 PF00266.14 gi|336252690|ref|YP_004595797.1| - 1.5e-152 507.6 0.0 1.7e-152 507.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|336252690|ref|YP_004595797.1| - 5.8e-11 42.0 0.2 1.1e-10 41.1 0.1 1.4 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|336252690|ref|YP_004595797.1| - 1.3e-09 37.6 0.0 1.5e-09 37.4 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase SelA PF03841.8 gi|336252690|ref|YP_004595797.1| - 5.8e-05 22.0 0.0 0.00014 20.7 0.0 1.5 1 1 0 1 1 1 1 L-seryl-tRNA selenium transferase Cys_Met_Meta_PP PF01053.15 gi|336252690|ref|YP_004595797.1| - 0.0023 16.2 0.0 0.0075 14.5 0.0 1.8 3 0 0 3 3 3 1 Cys/Met metabolism PLP-dependent enzyme YPEB PF14620.1 gi|336252690|ref|YP_004595797.1| - 0.031 13.2 0.0 0.066 12.2 0.0 1.5 2 0 0 2 2 2 0 YpeB sporulation Pyridoxal_deC PF00282.14 gi|336252690|ref|YP_004595797.1| - 0.11 10.9 0.0 0.21 9.9 0.0 1.4 1 0 0 1 1 1 0 Pyridoxal-dependent decarboxylase conserved domain Mut7-C PF01927.11 gi|336252691|ref|YP_004595798.1| - 0.032 14.2 0.3 0.057 13.3 0.2 1.4 1 0 0 1 1 1 0 Mut7-C RNAse domain Lar_restr_allev PF14354.1 gi|336252691|ref|YP_004595798.1| - 0.15 12.3 6.6 0.13 12.5 2.6 2.3 2 0 0 2 2 2 0 Restriction alleviation protein Lar zinc-ribbons_6 PF07191.7 gi|336252691|ref|YP_004595798.1| - 0.27 11.0 4.3 0.46 10.3 3.0 1.3 1 0 0 1 1 1 0 zinc-ribbons ABC_tran PF00005.22 gi|336252692|ref|YP_004595799.1| - 7e-25 87.9 0.0 9.7e-25 87.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|336252692|ref|YP_004595799.1| - 2.6e-13 50.6 0.0 1.3e-08 35.1 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|336252692|ref|YP_004595799.1| - 0.0069 15.8 0.0 0.015 14.8 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|336252692|ref|YP_004595799.1| - 0.025 13.7 0.0 0.039 13.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|336252692|ref|YP_004595799.1| - 0.026 14.8 0.1 0.039 14.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|336252692|ref|YP_004595799.1| - 0.04 13.8 0.0 0.21 11.5 0.0 2.1 2 1 0 2 2 2 0 AAA ATPase domain SbcCD_C PF13558.1 gi|336252692|ref|YP_004595799.1| - 0.069 13.0 0.1 0.62 10.0 0.1 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_25 PF13481.1 gi|336252692|ref|YP_004595799.1| - 0.078 12.3 0.3 1.2 8.5 0.1 2.6 1 1 1 2 2 2 0 AAA domain MMR_HSR1 PF01926.18 gi|336252692|ref|YP_004595799.1| - 0.083 12.8 0.0 0.22 11.4 0.0 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_22 PF13401.1 gi|336252692|ref|YP_004595799.1| - 0.092 12.8 0.0 0.45 10.6 0.0 2.0 1 1 0 1 1 1 0 AAA domain SMC_N PF02463.14 gi|336252692|ref|YP_004595799.1| - 0.18 11.0 0.0 12 5.0 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain ABC2_membrane_2 PF12679.2 gi|336252693|ref|YP_004595800.1| - 1e-38 132.8 10.9 1.4e-38 132.3 7.6 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|336252693|ref|YP_004595800.1| - 1.4e-19 70.2 15.5 1.8e-19 69.8 10.6 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|336252693|ref|YP_004595800.1| - 4.8e-06 25.8 12.4 4.8e-06 25.8 8.6 1.7 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|336252693|ref|YP_004595800.1| - 9.5e-06 24.9 11.1 9.5e-06 24.9 7.7 1.4 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_5 PF13346.1 gi|336252693|ref|YP_004595800.1| - 0.0004 19.7 8.8 0.0017 17.6 6.1 1.9 1 1 0 1 1 1 1 ABC-2 family transporter protein DUF4190 PF13828.1 gi|336252693|ref|YP_004595800.1| - 0.11 12.0 0.1 0.11 12.0 0.1 5.0 4 1 0 4 4 4 0 Domain of unknown function (DUF4190) DUF3464 PF11947.3 gi|336252693|ref|YP_004595800.1| - 0.36 10.2 8.1 0.8 9.1 5.6 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3464) DUF424 PF04242.8 gi|336252694|ref|YP_004595801.1| - 1.3e-30 105.2 0.3 1.4e-30 105.1 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF424) TPR_1 PF00515.23 gi|336252695|ref|YP_004595802.1| - 6.8e-21 72.9 7.2 4.2e-05 22.9 0.0 5.8 6 0 0 6 6 6 5 Tetratricopeptide repeat TPR_11 PF13414.1 gi|336252695|ref|YP_004595802.1| - 7.3e-21 73.5 13.8 7.7e-11 41.4 0.7 3.7 2 1 2 4 4 4 4 TPR repeat TPR_2 PF07719.12 gi|336252695|ref|YP_004595802.1| - 3.9e-17 60.7 16.0 0.00014 21.4 0.0 5.8 6 0 0 6 6 6 5 Tetratricopeptide repeat TPR_12 PF13424.1 gi|336252695|ref|YP_004595802.1| - 7.9e-14 51.3 16.0 4.6e-07 29.6 1.9 3.9 1 1 2 3 3 3 3 Tetratricopeptide repeat TPR_8 PF13181.1 gi|336252695|ref|YP_004595802.1| - 1.5e-13 49.4 3.1 0.0028 17.3 0.2 4.8 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_16 PF13432.1 gi|336252695|ref|YP_004595802.1| - 7e-12 45.6 15.8 3.5e-05 24.3 0.6 3.9 3 2 1 4 4 4 3 Tetratricopeptide repeat TPR_17 PF13431.1 gi|336252695|ref|YP_004595802.1| - 4.1e-11 42.1 0.4 0.029 14.5 0.0 4.7 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_7 PF13176.1 gi|336252695|ref|YP_004595802.1| - 2.1e-10 39.6 11.9 9.4e-05 21.9 0.1 4.9 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_14 PF13428.1 gi|336252695|ref|YP_004595802.1| - 1.5e-08 34.5 19.3 0.00097 19.5 0.8 5.4 2 1 4 6 6 5 3 Tetratricopeptide repeat TPR_10 PF13374.1 gi|336252695|ref|YP_004595802.1| - 8e-08 31.9 20.7 0.0064 16.3 0.6 4.8 5 0 0 5 5 4 3 Tetratricopeptide repeat Apc3 PF12895.2 gi|336252695|ref|YP_004595802.1| - 6.5e-07 29.3 1.0 0.0031 17.6 0.0 2.5 1 1 2 3 3 3 3 Anaphase-promoting complex, cyclosome, subunit 3 TPR_9 PF13371.1 gi|336252695|ref|YP_004595802.1| - 5.9e-06 26.0 12.7 0.016 15.0 0.2 4.2 1 1 3 4 4 4 3 Tetratricopeptide repeat TPR_4 PF07721.9 gi|336252695|ref|YP_004595802.1| - 7.4e-05 22.8 16.2 0.016 15.5 1.2 5.7 6 0 0 6 6 5 2 Tetratricopeptide repeat TPR_19 PF14559.1 gi|336252695|ref|YP_004595802.1| - 0.0001 22.5 8.5 0.48 10.7 0.0 4.2 2 1 1 4 4 4 2 Tetratricopeptide repeat NARP1 PF12569.3 gi|336252695|ref|YP_004595802.1| - 0.00021 20.2 0.4 0.00035 19.4 0.1 1.5 1 1 0 1 1 1 1 NMDA receptor-regulated protein 1 TPR_6 PF13174.1 gi|336252695|ref|YP_004595802.1| - 0.0028 17.9 5.5 11 6.7 0.1 4.7 5 0 0 5 5 4 0 Tetratricopeptide repeat Apc5 PF12862.2 gi|336252695|ref|YP_004595802.1| - 0.0082 15.9 6.2 0.31 10.9 0.4 3.4 1 1 2 3 3 3 1 Anaphase-promoting complex subunit 5 TPR_15 PF13429.1 gi|336252695|ref|YP_004595802.1| - 0.037 13.0 5.2 0.13 11.3 0.3 2.3 1 1 1 2 2 2 0 Tetratricopeptide repeat TPR_20 PF14561.1 gi|336252695|ref|YP_004595802.1| - 0.11 12.5 5.0 0.89 9.7 0.3 2.6 1 1 0 2 2 2 0 Tetratricopeptide repeat SPOB_a PF14689.1 gi|336252695|ref|YP_004595802.1| - 0.13 11.8 1.1 17 5.1 0.0 2.8 2 0 0 2 2 2 0 Sensor_kinase_SpoOB-type, alpha-helical domain Acetyltransf_11 PF13720.1 gi|336252695|ref|YP_004595802.1| - 0.14 12.3 1.6 0.2 11.8 0.3 1.9 2 0 0 2 2 1 0 Udp N-acetylglucosamine O-acyltransferase; Domain 2 DUF349 PF03993.7 gi|336252695|ref|YP_004595802.1| - 0.77 9.9 13.5 2.8 8.1 2.0 2.7 2 0 0 2 2 2 0 Domain of Unknown Function (DUF349) LigT_PEase PF02834.11 gi|336252696|ref|YP_004595803.1| - 3.8e-29 100.5 0.0 1.4e-15 57.0 0.0 2.1 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.1 gi|336252696|ref|YP_004595803.1| - 5e-21 75.0 0.1 5.7e-21 74.8 0.1 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.4 gi|336252696|ref|YP_004595803.1| - 3.8e-09 36.5 0.0 5e-09 36.1 0.0 1.2 1 0 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain HVSL PF09749.4 gi|336252696|ref|YP_004595803.1| - 0.027 13.4 0.0 0.036 13.0 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised conserved protein PLDc_N PF13396.1 gi|336252697|ref|YP_004595804.1| - 8.3e-08 31.7 2.1 8.3e-08 31.7 1.5 2.1 1 1 0 2 2 2 1 Phospholipase_D-nuclease N-terminal Glucos_trans_II PF14264.1 gi|336252697|ref|YP_004595804.1| - 0.016 14.2 2.7 0.018 14.0 1.9 1.0 1 0 0 1 1 1 0 Glucosyl transferase GtrII DPM3 PF08285.6 gi|336252697|ref|YP_004595804.1| - 0.056 13.3 2.8 0.07 12.9 1.9 1.1 1 0 0 1 1 1 0 Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) DUF1980 PF09323.5 gi|336252697|ref|YP_004595804.1| - 0.061 13.0 0.5 0.069 12.8 0.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1980) Bax1-I PF01027.15 gi|336252697|ref|YP_004595804.1| - 0.072 12.6 6.4 0.086 12.4 4.4 1.1 1 0 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 FixQ PF05545.6 gi|336252697|ref|YP_004595804.1| - 0.33 10.6 17.7 0.19 11.3 2.9 2.3 1 1 1 2 2 2 0 Cbb3-type cytochrome oxidase component FixQ Fig1 PF12351.3 gi|336252697|ref|YP_004595804.1| - 0.39 10.5 0.1 0.39 10.5 0.1 1.8 1 1 1 2 2 2 0 Ca2+ regulator and membrane fusion protein Fig1 7tm_7 PF08395.7 gi|336252697|ref|YP_004595804.1| - 0.43 9.5 2.8 0.46 9.4 2.0 1.0 1 0 0 1 1 1 0 7tm Chemosensory receptor YrhC PF14143.1 gi|336252697|ref|YP_004595804.1| - 0.54 10.2 2.9 0.7 9.8 2.0 1.3 1 0 0 1 1 1 0 YrhC-like protein Yip1 PF04893.12 gi|336252697|ref|YP_004595804.1| - 0.74 9.2 10.0 0.93 8.9 6.9 1.1 1 0 0 1 1 1 0 Yip1 domain NfeD PF01957.13 gi|336252697|ref|YP_004595804.1| - 1.3 9.1 6.1 1.6 8.8 4.2 1.1 1 0 0 1 1 1 0 NfeD-like C-terminal, partner-binding DUF1469 PF07332.6 gi|336252697|ref|YP_004595804.1| - 2.3 7.9 8.5 2.8 7.6 5.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) DUF4328 PF14219.1 gi|336252697|ref|YP_004595804.1| - 2.7 7.2 6.6 3.4 6.9 4.6 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4328) DUF4131 PF13567.1 gi|336252697|ref|YP_004595804.1| - 3.2 7.1 6.6 4.4 6.6 4.5 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) MARVEL PF01284.18 gi|336252697|ref|YP_004595804.1| - 4.6 7.0 10.2 9.4 6.0 6.9 1.6 1 1 0 1 1 1 0 Membrane-associating domain RSN1_TM PF13967.1 gi|336252697|ref|YP_004595804.1| - 6.4 6.3 7.5 38 3.7 5.3 1.9 1 1 0 1 1 1 0 Late exocytosis, associated with Golgi transport Ribosomal_L39 PF00832.15 gi|336252699|ref|YP_004595806.1| - 1.8e-21 75.3 6.9 2.1e-21 75.0 4.8 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein Ribosomal_L31e PF01198.14 gi|336252700|ref|YP_004595807.1| - 7.2e-24 83.2 0.2 8.4e-24 83.0 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L31e eIF-6 PF01912.13 gi|336252701|ref|YP_004595808.1| - 1.9e-71 239.2 0.2 2.2e-71 239.0 0.1 1.0 1 0 0 1 1 1 1 eIF-6 family AFOR_N PF02730.10 gi|336252702|ref|YP_004595809.1| - 0.13 11.5 0.3 0.18 11.1 0.2 1.3 1 1 0 1 1 1 0 Aldehyde ferredoxin oxidoreductase, N-terminal domain ASCH PF04266.9 gi|336252703|ref|YP_004595810.1| - 0.00049 20.4 0.1 0.00077 19.8 0.1 1.3 1 1 0 1 1 1 1 ASCH domain Ribosomal_L18ae PF01775.12 gi|336252704|ref|YP_004595811.1| - 6.9e-10 38.8 0.0 7.5e-10 38.7 0.0 1.0 1 0 0 1 1 1 1 Ribosomal L18ae/LX protein domain YhzD PF14120.1 gi|336252704|ref|YP_004595811.1| - 0.067 13.1 0.3 0.083 12.8 0.2 1.2 1 0 0 1 1 1 0 YhzD-like protein Prefoldin PF02996.12 gi|336252705|ref|YP_004595812.1| - 1.2e-26 92.6 10.5 1.2e-26 92.6 7.3 2.0 1 1 1 2 2 2 2 Prefoldin subunit Prefoldin_2 PF01920.15 gi|336252705|ref|YP_004595812.1| - 4.7e-07 29.5 27.3 0.00052 19.7 5.6 2.5 1 1 1 2 2 2 2 Prefoldin subunit IncA PF04156.9 gi|336252705|ref|YP_004595812.1| - 2.7e-05 23.8 28.7 0.0079 15.8 8.3 2.1 2 0 0 2 2 2 2 IncA protein NPV_P10 PF05531.7 gi|336252705|ref|YP_004595812.1| - 5.7e-05 23.2 21.1 0.0035 17.5 4.0 2.5 2 1 0 2 2 2 2 Nucleopolyhedrovirus P10 protein GAS PF13851.1 gi|336252705|ref|YP_004595812.1| - 0.00015 21.0 17.4 0.017 14.3 3.4 2.1 2 0 0 2 2 2 2 Growth-arrest specific micro-tubule binding Spc24 PF08286.6 gi|336252705|ref|YP_004595812.1| - 0.00021 20.9 19.8 0.0013 18.4 1.4 2.2 2 0 0 2 2 2 1 Spc24 subunit of Ndc80 Spc7 PF08317.6 gi|336252705|ref|YP_004595812.1| - 0.00038 19.2 17.3 0.0043 15.7 3.8 2.1 2 0 0 2 2 2 2 Spc7 kinetochore protein Cast PF10174.4 gi|336252705|ref|YP_004595812.1| - 0.00061 17.9 13.7 0.00074 17.7 9.5 1.1 1 0 0 1 1 1 1 RIM-binding protein of the cytomatrix active zone DUF4337 PF14235.1 gi|336252705|ref|YP_004595812.1| - 0.00064 19.5 17.3 0.0037 17.1 4.6 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4337) CENP-F_leu_zip PF10473.4 gi|336252705|ref|YP_004595812.1| - 0.00077 19.3 21.4 0.053 13.3 4.3 2.2 2 0 0 2 2 2 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF972 PF06156.8 gi|336252705|ref|YP_004595812.1| - 0.0011 19.2 17.1 0.039 14.2 2.8 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF972) Laminin_II PF06009.7 gi|336252705|ref|YP_004595812.1| - 0.0012 18.6 11.3 0.055 13.2 1.7 2.2 2 0 0 2 2 2 2 Laminin Domain II BLOC1_2 PF10046.4 gi|336252705|ref|YP_004595812.1| - 0.0013 18.8 21.9 0.081 13.0 5.0 2.5 2 1 0 2 2 2 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 Mod_r PF07200.8 gi|336252705|ref|YP_004595812.1| - 0.0015 18.4 16.1 0.0054 16.6 2.2 2.1 2 0 0 2 2 2 1 Modifier of rudimentary (Mod(r)) protein MIS13 PF08202.6 gi|336252705|ref|YP_004595812.1| - 0.0015 17.6 9.0 0.0018 17.4 6.2 1.1 1 0 0 1 1 1 1 Mis12-Mtw1 protein family Mnd1 PF03962.10 gi|336252705|ref|YP_004595812.1| - 0.0017 18.0 19.3 0.093 12.3 4.2 2.1 2 0 0 2 2 2 2 Mnd1 family Tropomyosin_1 PF12718.2 gi|336252705|ref|YP_004595812.1| - 0.0017 18.2 23.9 0.018 14.9 5.6 2.2 2 0 0 2 2 2 1 Tropomyosin like Synaptobrevin PF00957.16 gi|336252705|ref|YP_004595812.1| - 0.0025 17.3 16.4 0.0078 15.7 2.8 2.3 2 0 0 2 2 2 1 Synaptobrevin DUF4349 PF14257.1 gi|336252705|ref|YP_004595812.1| - 0.003 16.8 28.0 0.0082 15.4 9.1 2.1 1 1 1 2 2 2 1 Domain of unknown function (DUF4349) APG6 PF04111.7 gi|336252705|ref|YP_004595812.1| - 0.0031 16.6 24.5 0.02 13.9 5.3 2.0 2 0 0 2 2 2 2 Autophagy protein Apg6 DUF1664 PF07889.7 gi|336252705|ref|YP_004595812.1| - 0.0031 17.2 14.2 0.11 12.2 2.0 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF1664) AAA_13 PF13166.1 gi|336252705|ref|YP_004595812.1| - 0.0037 15.8 17.7 0.028 12.8 3.2 2.0 2 0 0 2 2 2 2 AAA domain Lzipper-MIP1 PF14389.1 gi|336252705|ref|YP_004595812.1| - 0.004 17.2 4.9 0.004 17.2 3.4 2.6 2 1 0 2 2 1 1 Leucine-zipper of ternary complex factor MIP1 TSC22 PF01166.13 gi|336252705|ref|YP_004595812.1| - 0.0042 17.0 4.5 0.0042 17.0 3.1 3.1 3 1 1 4 4 2 1 TSC-22/dip/bun family MscS_porin PF12795.2 gi|336252705|ref|YP_004595812.1| - 0.0047 16.2 28.8 0.016 14.5 7.9 2.1 2 0 0 2 2 2 1 Mechanosensitive ion channel porin domain Ax_dynein_light PF10211.4 gi|336252705|ref|YP_004595812.1| - 0.0049 16.7 20.5 0.05 13.4 5.0 2.1 2 0 0 2 2 2 1 Axonemal dynein light chain DUF4618 PF15397.1 gi|336252705|ref|YP_004595812.1| - 0.0055 16.0 17.8 0.097 11.9 1.8 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF4618) TFR_dimer PF04253.10 gi|336252705|ref|YP_004595812.1| - 0.0056 16.2 3.1 0.26 10.8 0.1 2.3 2 0 0 2 2 2 1 Transferrin receptor-like dimerisation domain DivIVA PF05103.8 gi|336252705|ref|YP_004595812.1| - 0.0066 16.4 19.9 0.14 12.2 4.0 2.2 2 0 0 2 2 2 2 DivIVA protein SlyX PF04102.7 gi|336252705|ref|YP_004595812.1| - 0.0077 16.5 32.3 0.097 13.0 10.5 2.9 3 0 0 3 3 2 1 SlyX DUF869 PF05911.6 gi|336252705|ref|YP_004595812.1| - 0.0086 14.3 10.0 0.01 14.0 7.0 1.1 1 0 0 1 1 1 1 Plant protein of unknown function (DUF869) TBPIP PF07106.8 gi|336252705|ref|YP_004595812.1| - 0.0093 15.5 26.5 0.051 13.1 5.2 2.1 1 1 1 2 2 2 1 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Tnp_P_element PF12017.3 gi|336252705|ref|YP_004595812.1| - 0.0095 15.1 0.1 0.0095 15.1 0.1 2.2 1 1 1 2 2 2 1 Transposase protein AAA_27 PF13514.1 gi|336252705|ref|YP_004595812.1| - 0.011 13.4 18.6 0.016 12.9 12.9 1.2 1 0 0 1 1 1 0 AAA domain DivIC PF04977.10 gi|336252705|ref|YP_004595812.1| - 0.011 15.1 29.9 0.022 14.2 6.6 3.2 2 1 1 3 3 3 0 Septum formation initiator ATG16 PF08614.6 gi|336252705|ref|YP_004595812.1| - 0.013 15.3 15.0 0.094 12.5 1.4 2.1 2 0 0 2 2 2 0 Autophagy protein 16 (ATG16) Atg14 PF10186.4 gi|336252705|ref|YP_004595812.1| - 0.013 14.4 11.7 0.19 10.6 1.5 2.0 2 0 0 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 DUF812 PF05667.6 gi|336252705|ref|YP_004595812.1| - 0.016 13.7 19.8 0.1 11.1 4.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF812) DUF904 PF06005.7 gi|336252705|ref|YP_004595812.1| - 0.017 15.4 29.7 0.44 10.8 7.6 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF904) BicD PF09730.4 gi|336252705|ref|YP_004595812.1| - 0.021 13.1 16.4 0.024 12.9 11.4 1.0 1 0 0 1 1 1 0 Microtubule-associated protein Bicaudal-D DUF2205 PF10224.4 gi|336252705|ref|YP_004595812.1| - 0.021 14.3 14.2 0.068 12.7 0.9 2.5 2 0 0 2 2 2 0 Predicted coiled-coil protein (DUF2205) COG2 PF06148.6 gi|336252705|ref|YP_004595812.1| - 0.024 14.5 1.1 0.024 14.5 0.8 2.2 2 1 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF2730 PF10805.3 gi|336252705|ref|YP_004595812.1| - 0.025 14.3 8.6 0.26 11.0 1.2 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2730) DUF4515 PF14988.1 gi|336252705|ref|YP_004595812.1| - 0.027 14.1 22.8 0.068 12.8 3.4 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4515) Vps51 PF08700.6 gi|336252705|ref|YP_004595812.1| - 0.029 14.2 10.9 0.17 11.7 1.4 2.9 3 1 0 3 3 2 0 Vps51/Vps67 DASH_Dam1 PF08653.5 gi|336252705|ref|YP_004595812.1| - 0.029 14.1 9.7 0.081 12.7 0.9 3.0 3 1 0 3 3 2 0 DASH complex subunit Dam1 Fmp27_WPPW PF10359.4 gi|336252705|ref|YP_004595812.1| - 0.031 12.7 12.0 0.15 10.4 2.0 2.0 2 0 0 2 2 2 0 RNA pol II promoter Fmp27 protein domain YlqD PF11068.3 gi|336252705|ref|YP_004595812.1| - 0.032 14.2 26.5 0.28 11.2 6.7 2.5 2 0 0 2 2 2 0 YlqD protein CorA PF01544.13 gi|336252705|ref|YP_004595812.1| - 0.034 13.1 12.3 0.092 11.7 2.5 2.2 2 0 0 2 2 2 0 CorA-like Mg2+ transporter protein FlaC_arch PF05377.6 gi|336252705|ref|YP_004595812.1| - 0.035 14.0 18.6 3.1 7.7 3.3 3.8 3 1 0 3 3 3 0 Flagella accessory protein C (FlaC) DUF607 PF04678.8 gi|336252705|ref|YP_004595812.1| - 0.037 13.9 12.5 0.26 11.1 2.4 2.1 1 1 1 2 2 2 0 Protein of unknown function, DUF607 CASP_C PF08172.7 gi|336252705|ref|YP_004595812.1| - 0.037 13.0 12.5 0.062 12.3 8.7 1.3 1 1 0 1 1 1 0 CASP C terminal Baculo_PEP_C PF04513.7 gi|336252705|ref|YP_004595812.1| - 0.039 13.7 18.0 0.28 11.0 3.6 2.4 1 1 2 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus MCPsignal PF00015.16 gi|336252705|ref|YP_004595812.1| - 0.039 13.5 14.7 0.03 13.8 1.7 2.1 1 1 1 2 2 2 0 Methyl-accepting chemotaxis protein (MCP) signalling domain Allexi_40kDa PF05549.6 gi|336252705|ref|YP_004595812.1| - 0.041 13.1 5.7 0.74 9.0 0.2 2.0 2 0 0 2 2 2 0 Allexivirus 40kDa protein DUF3450 PF11932.3 gi|336252705|ref|YP_004595812.1| - 0.044 13.0 25.3 0.07 12.3 6.8 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) Tektin PF03148.9 gi|336252705|ref|YP_004595812.1| - 0.048 12.1 19.5 0.059 11.8 2.7 2.1 2 0 0 2 2 2 0 Tektin family Cluap1 PF10234.4 gi|336252705|ref|YP_004595812.1| - 0.052 12.7 15.5 0.046 12.9 2.8 2.1 2 0 0 2 2 2 0 Clusterin-associated protein-1 AKNA PF12443.3 gi|336252705|ref|YP_004595812.1| - 0.053 13.5 15.6 0.091 12.7 1.6 2.4 2 0 0 2 2 2 0 AT-hook-containing transcription factor ERM PF00769.14 gi|336252705|ref|YP_004595812.1| - 0.054 13.0 21.2 0.1 12.1 4.7 2.2 2 0 0 2 2 2 0 Ezrin/radixin/moesin family Tmemb_cc2 PF10267.4 gi|336252705|ref|YP_004595812.1| - 0.056 12.0 16.4 0.44 9.0 4.0 2.0 2 0 0 2 2 2 0 Predicted transmembrane and coiled-coil 2 protein Dor1 PF04124.7 gi|336252705|ref|YP_004595812.1| - 0.057 11.8 11.8 0.18 10.2 1.1 2.1 2 0 0 2 2 2 0 Dor1-like family Syntaxin PF00804.20 gi|336252705|ref|YP_004595812.1| - 0.062 13.4 19.2 3.7 7.7 13.3 2.4 1 1 0 1 1 1 0 Syntaxin EzrA PF06160.7 gi|336252705|ref|YP_004595812.1| - 0.063 11.4 20.8 0.25 9.4 4.4 2.1 2 0 0 2 2 2 0 Septation ring formation regulator, EzrA SPT16 PF08644.6 gi|336252705|ref|YP_004595812.1| - 0.064 13.0 10.7 0.22 11.3 0.2 2.1 2 0 0 2 2 2 0 FACT complex subunit (SPT16/CDC68) DUF342 PF03961.8 gi|336252705|ref|YP_004595812.1| - 0.066 11.6 16.7 0.091 11.1 2.3 2.0 1 1 0 2 2 2 0 Protein of unknown function (DUF342) DUF2968 PF11180.3 gi|336252705|ref|YP_004595812.1| - 0.067 12.5 27.8 0.23 10.8 6.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2968) DUF4200 PF13863.1 gi|336252705|ref|YP_004595812.1| - 0.071 13.0 25.2 0.4 10.6 5.8 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4200) Hemerythrin PF01814.18 gi|336252705|ref|YP_004595812.1| - 0.074 13.2 8.3 0.45 10.6 0.4 2.6 2 1 0 2 2 2 0 Hemerythrin HHE cation binding domain Fib_alpha PF08702.5 gi|336252705|ref|YP_004595812.1| - 0.081 13.0 17.6 1.1 9.3 1.9 2.4 2 1 0 2 2 2 0 Fibrinogen alpha/beta chain family LUC7 PF03194.10 gi|336252705|ref|YP_004595812.1| - 0.089 12.3 17.3 0.38 10.2 2.5 2.1 2 0 0 2 2 2 0 LUC7 N_terminus Phage_GP20 PF06810.6 gi|336252705|ref|YP_004595812.1| - 0.089 12.2 25.0 0.48 9.8 3.6 3.0 2 1 1 3 3 3 0 Phage minor structural protein GP20 Myosin_tail_1 PF01576.14 gi|336252705|ref|YP_004595812.1| - 0.089 10.4 21.0 0.29 8.7 5.0 2.0 2 0 0 2 2 2 0 Myosin tail ADIP PF11559.3 gi|336252705|ref|YP_004595812.1| - 0.097 12.5 20.3 0.35 10.7 4.0 2.2 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding TCO89 PF10452.4 gi|336252705|ref|YP_004595812.1| - 0.098 11.5 6.7 0.11 11.3 4.7 1.0 1 0 0 1 1 1 0 TORC1 subunit TCO89 DUF724 PF05266.9 gi|336252705|ref|YP_004595812.1| - 0.11 12.1 13.6 0.59 9.7 2.6 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF724) DUF4140 PF13600.1 gi|336252705|ref|YP_004595812.1| - 0.11 12.9 23.0 2.6 8.5 6.0 2.8 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) Reo_sigmaC PF04582.7 gi|336252705|ref|YP_004595812.1| - 0.12 11.5 7.4 0.16 11.0 0.6 2.0 1 1 1 2 2 2 0 Reovirus sigma C capsid protein YPEB PF14620.1 gi|336252705|ref|YP_004595812.1| - 0.12 11.3 11.4 0.47 9.4 0.5 2.1 2 0 0 2 2 2 0 YpeB sporulation FliD_C PF07195.7 gi|336252705|ref|YP_004595812.1| - 0.12 11.6 18.0 0.22 10.7 6.4 2.5 2 1 1 3 3 3 0 Flagellar hook-associated protein 2 C-terminus Fzo_mitofusin PF04799.8 gi|336252705|ref|YP_004595812.1| - 0.12 11.7 12.9 0.16 11.3 0.7 2.2 2 0 0 2 2 2 0 fzo-like conserved region DUF1759 PF03564.10 gi|336252705|ref|YP_004595812.1| - 0.13 12.0 7.1 1.2 8.8 0.5 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1759) Prefoldin_3 PF13758.1 gi|336252705|ref|YP_004595812.1| - 0.13 12.0 10.3 7.1 6.4 6.7 2.7 1 1 0 1 1 1 0 Prefoldin subunit TraF_2 PF13729.1 gi|336252705|ref|YP_004595812.1| - 0.13 11.0 10.9 2.4 6.8 0.1 2.0 1 1 1 2 2 2 0 F plasmid transfer operon, TraF, protein Prominin PF05478.6 gi|336252705|ref|YP_004595812.1| - 0.14 9.7 11.0 0.38 8.2 1.1 2.0 2 0 0 2 2 2 0 Prominin SYCE1 PF15233.1 gi|336252705|ref|YP_004595812.1| - 0.14 12.0 16.9 0.13 12.1 4.3 2.3 2 0 0 2 2 2 0 Synaptonemal complex central element protein 1 Cytochrom_C_2 PF01322.15 gi|336252705|ref|YP_004595812.1| - 0.14 12.6 12.1 0.14 12.6 3.5 2.1 1 1 1 2 2 2 0 Cytochrome C' DUF3847 PF12958.2 gi|336252705|ref|YP_004595812.1| - 0.15 11.8 19.9 0.86 9.4 3.3 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3847) ORF6C PF10552.4 gi|336252705|ref|YP_004595812.1| - 0.15 11.8 16.5 0.31 10.7 2.5 2.3 2 0 0 2 2 2 0 ORF6C domain COG5 PF10392.4 gi|336252705|ref|YP_004595812.1| - 0.15 11.9 6.8 0.7 9.8 0.7 2.3 2 0 0 2 2 2 0 Golgi transport complex subunit 5 IFT57 PF10498.4 gi|336252705|ref|YP_004595812.1| - 0.16 10.6 18.3 0.18 10.5 3.7 2.1 2 0 0 2 2 2 0 Intra-flagellar transport protein 57 T2SF PF00482.18 gi|336252705|ref|YP_004595812.1| - 0.17 11.7 2.3 4.5 7.2 0.1 2.2 2 0 0 2 2 2 0 Type II secretion system (T2SS), protein F Cob_adeno_trans PF01923.13 gi|336252705|ref|YP_004595812.1| - 0.18 11.5 14.6 0.074 12.8 1.6 2.6 1 1 1 2 2 2 0 Cobalamin adenosyltransferase FbpA PF05833.6 gi|336252705|ref|YP_004595812.1| - 0.19 10.2 19.2 0.21 10.0 3.6 2.1 2 0 0 2 2 2 0 Fibronectin-binding protein A N-terminus (FbpA) DUF948 PF06103.6 gi|336252705|ref|YP_004595812.1| - 0.2 11.5 14.6 1.5 8.7 2.5 2.4 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) Occludin_ELL PF07303.8 gi|336252705|ref|YP_004595812.1| - 0.21 12.3 15.5 0.77 10.5 1.3 2.4 2 1 0 2 2 2 0 Occludin homology domain DUF641 PF04859.7 gi|336252705|ref|YP_004595812.1| - 0.22 11.2 13.9 1.3 8.7 2.5 2.2 2 0 0 2 2 2 0 Plant protein of unknown function (DUF641) DUF4201 PF13870.1 gi|336252705|ref|YP_004595812.1| - 0.22 10.9 16.7 0.51 9.7 2.8 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4201) DUF2803 PF10972.3 gi|336252705|ref|YP_004595812.1| - 0.23 10.9 5.5 0.31 10.4 3.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2803) Muted PF14942.1 gi|336252705|ref|YP_004595812.1| - 0.24 11.2 14.0 1.2 9.0 2.6 2.2 2 0 0 2 2 2 0 Organelle biogenesis, Muted-like protein Nup54 PF13874.1 gi|336252705|ref|YP_004595812.1| - 0.24 11.0 18.7 0.78 9.3 5.0 2.1 2 0 0 2 2 2 0 Nucleoporin complex subunit 54 KAR9 PF08580.5 gi|336252705|ref|YP_004595812.1| - 0.25 9.5 5.8 0.32 9.2 4.1 1.1 1 0 0 1 1 1 0 Yeast cortical protein KAR9 Sipho_Gp157 PF05565.6 gi|336252705|ref|YP_004595812.1| - 0.25 10.9 12.3 0.54 9.8 2.4 2.2 2 0 0 2 2 2 0 Siphovirus Gp157 Seryl_tRNA_N PF02403.17 gi|336252705|ref|YP_004595812.1| - 0.25 11.3 18.9 0.4 10.7 2.9 2.6 2 1 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain GrpE PF01025.14 gi|336252705|ref|YP_004595812.1| - 0.26 10.8 17.8 0.95 8.9 4.2 2.2 2 0 0 2 2 2 0 GrpE Rab5-bind PF09311.6 gi|336252705|ref|YP_004595812.1| - 0.26 11.1 24.0 0.49 10.2 5.0 2.2 2 0 0 2 2 2 0 Rabaptin-like protein Vps5 PF09325.5 gi|336252705|ref|YP_004595812.1| - 0.28 10.4 14.3 2.4 7.3 9.9 2.0 1 1 0 1 1 1 0 Vps5 C terminal like Spectrin PF00435.16 gi|336252705|ref|YP_004595812.1| - 0.32 11.3 21.9 0.78 10.0 4.7 2.3 2 0 0 2 2 2 0 Spectrin repeat MtrB PF05440.7 gi|336252705|ref|YP_004595812.1| - 0.32 11.0 7.2 3.5 7.7 0.7 2.5 2 1 0 2 2 2 0 Tetrahydromethanopterin S-methyltransferase subunit B V_ATPase_I PF01496.14 gi|336252705|ref|YP_004595812.1| - 0.33 8.7 21.3 0.22 9.3 4.4 2.0 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family Osmo_CC PF08946.5 gi|336252705|ref|YP_004595812.1| - 0.34 10.9 31.6 0.076 13.0 5.4 4.1 3 2 1 4 4 3 0 Osmosensory transporter coiled coil DUF4446 PF14584.1 gi|336252705|ref|YP_004595812.1| - 0.38 10.5 14.0 1 9.1 2.9 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4446) Uds1 PF15456.1 gi|336252705|ref|YP_004595812.1| - 0.43 10.5 16.5 2.7 8.0 11.4 2.2 1 1 0 1 1 1 0 Up-regulated During Septation TPR_MLP1_2 PF07926.7 gi|336252705|ref|YP_004595812.1| - 0.61 9.8 26.8 0.4 10.4 8.0 2.4 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein DUF2937 PF11157.3 gi|336252705|ref|YP_004595812.1| - 0.61 9.3 17.0 0.32 10.3 4.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2937) NTR2 PF15458.1 gi|336252705|ref|YP_004595812.1| - 0.62 9.2 26.3 0.27 10.4 7.6 2.3 2 0 0 2 2 2 0 Nineteen complex-related protein 2 Not3 PF04065.10 gi|336252705|ref|YP_004595812.1| - 0.62 9.2 18.2 0.59 9.3 4.2 2.1 2 0 0 2 2 2 0 Not1 N-terminal domain, CCR4-Not complex component HR1 PF02185.11 gi|336252705|ref|YP_004595812.1| - 0.64 9.7 23.1 1.1 9.0 4.4 2.7 2 1 0 2 2 2 0 Hr1 repeat DegS PF05384.6 gi|336252705|ref|YP_004595812.1| - 0.65 9.1 14.7 0.6 9.3 2.4 2.3 2 0 0 2 2 2 0 Sensor protein DegS FH2 PF02181.18 gi|336252705|ref|YP_004595812.1| - 0.72 8.6 11.5 1.4 7.7 1.7 2.1 2 0 0 2 2 2 0 Formin Homology 2 Domain Sec8_exocyst PF04048.9 gi|336252705|ref|YP_004595812.1| - 0.74 9.4 10.5 0.33 10.5 2.0 2.2 2 0 0 2 2 2 0 Sec8 exocyst complex component specific domain TMF_TATA_bd PF12325.3 gi|336252705|ref|YP_004595812.1| - 0.75 9.5 25.7 0.63 9.7 4.9 2.4 2 1 0 2 2 2 0 TATA element modulatory factor 1 TATA binding Golgin_A5 PF09787.4 gi|336252705|ref|YP_004595812.1| - 0.78 8.1 23.0 0.2 10.1 3.0 2.0 1 1 1 2 2 2 0 Golgin subfamily A member 5 SAS4 PF15460.1 gi|336252705|ref|YP_004595812.1| - 0.79 9.6 13.9 0.074 12.9 1.8 2.8 2 1 0 2 2 2 0 Something about silencing, SAS, complex subunit 4 T2SM PF04612.7 gi|336252705|ref|YP_004595812.1| - 0.81 9.4 16.8 0.87 9.3 1.7 2.2 2 0 0 2 2 2 0 Type II secretion system (T2SS), protein M Sec34 PF04136.10 gi|336252705|ref|YP_004595812.1| - 0.86 9.2 11.2 2.1 8.0 1.1 2.1 2 0 0 2 2 2 0 Sec34-like family COG6 PF06419.6 gi|336252705|ref|YP_004595812.1| - 0.95 7.5 14.8 1.4 6.9 2.2 2.0 2 0 0 2 2 2 0 Conserved oligomeric complex COG6 DUF2353 PF09789.4 gi|336252705|ref|YP_004595812.1| - 1 8.5 17.0 37 3.4 11.8 2.0 1 1 0 1 1 1 0 Uncharacterized coiled-coil protein (DUF2353) Sas10_Utp3 PF04000.10 gi|336252705|ref|YP_004595812.1| - 1 9.6 14.0 0.24 11.5 2.0 2.5 2 1 0 2 2 2 0 Sas10/Utp3/C1D family Nsp1_C PF05064.8 gi|336252705|ref|YP_004595812.1| - 1 9.0 20.8 1.3 8.6 5.4 2.2 2 0 0 2 2 2 0 Nsp1-like C-terminal region Herpes_UL6 PF01763.11 gi|336252705|ref|YP_004595812.1| - 1 7.4 8.1 1.5 6.8 1.9 2.0 2 0 0 2 2 2 0 Herpesvirus UL6 like Hemagglutinin PF00509.13 gi|336252705|ref|YP_004595812.1| - 1.1 7.3 11.1 2.1 6.4 0.5 2.0 2 0 0 2 2 2 0 Haemagglutinin CENP-Q PF13094.1 gi|336252705|ref|YP_004595812.1| - 1.1 9.2 24.1 1.6 8.7 6.1 2.2 2 0 0 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit Cauli_AT PF03233.8 gi|336252705|ref|YP_004595812.1| - 1.1 8.9 9.5 1.4 8.5 1.3 2.2 2 0 0 2 2 2 0 Aphid transmission protein DUF3552 PF12072.3 gi|336252705|ref|YP_004595812.1| - 1.1 8.3 25.1 0.32 10.2 6.7 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF3552) Viral_P18 PF04521.8 gi|336252705|ref|YP_004595812.1| - 1.1 8.6 15.8 1.1 8.7 2.2 2.4 2 1 0 2 2 2 0 ssRNA positive strand viral 18kD cysteine rich protein Bap31 PF05529.7 gi|336252705|ref|YP_004595812.1| - 1.3 8.4 17.7 0.64 9.4 3.2 2.1 2 0 0 2 2 2 0 B-cell receptor-associated protein 31-like FliJ PF02050.11 gi|336252705|ref|YP_004595812.1| - 1.3 9.0 33.8 0.24 11.4 8.1 2.4 1 1 0 2 2 2 0 Flagellar FliJ protein TMF_DNA_bd PF12329.3 gi|336252705|ref|YP_004595812.1| - 1.3 8.8 27.9 4.2 7.2 7.2 2.7 2 1 0 2 2 2 0 TATA element modulatory factor 1 DNA binding bZIP_Maf PF03131.12 gi|336252705|ref|YP_004595812.1| - 1.3 9.3 22.4 3.1 8.1 5.8 2.4 2 0 0 2 2 2 0 bZIP Maf transcription factor DUF3373 PF11853.3 gi|336252705|ref|YP_004595812.1| - 1.4 7.3 22.1 0.077 11.5 3.2 2.1 1 1 0 2 2 2 0 Protein of unknown function (DUF3373) bZIP_1 PF00170.16 gi|336252705|ref|YP_004595812.1| - 1.5 8.8 20.2 0.68 9.9 0.3 3.2 2 2 1 3 3 3 0 bZIP transcription factor GCN5L1 PF06320.8 gi|336252705|ref|YP_004595812.1| - 1.5 8.6 11.3 0.22 11.3 2.3 2.2 2 0 0 2 2 2 0 GCN5-like protein 1 (GCN5L1) Lge1 PF11488.3 gi|336252705|ref|YP_004595812.1| - 1.6 9.0 17.4 4.1 7.6 4.4 2.6 2 1 0 2 2 2 0 Transcriptional regulatory protein LGE1 DUF2408 PF10303.4 gi|336252705|ref|YP_004595812.1| - 1.7 8.7 11.6 4.3 7.4 8.0 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF2408) WXG100 PF06013.7 gi|336252705|ref|YP_004595812.1| - 2 8.5 23.4 6.4 6.8 6.5 3.2 2 1 0 2 2 2 0 Proteins of 100 residues with WXG Jnk-SapK_ap_N PF09744.4 gi|336252705|ref|YP_004595812.1| - 2 8.3 18.5 3.2 7.7 4.1 2.1 2 0 0 2 2 2 0 JNK_SAPK-associated protein-1 MRP-L28 PF09812.4 gi|336252705|ref|YP_004595812.1| - 2.2 8.0 14.2 0.55 10.0 2.3 2.3 2 0 0 2 2 2 0 Mitochondrial ribosomal protein L28 Dynamitin PF04912.9 gi|336252705|ref|YP_004595812.1| - 2.3 6.9 19.6 0.48 9.1 4.9 2.1 2 0 0 2 2 2 0 Dynamitin Med4 PF10018.4 gi|336252705|ref|YP_004595812.1| - 2.3 7.5 18.0 3.6 6.9 3.5 2.4 2 0 0 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 PspA_IM30 PF04012.7 gi|336252705|ref|YP_004595812.1| - 2.4 7.4 28.1 3.5 6.9 5.0 2.3 2 1 0 2 2 2 0 PspA/IM30 family Rop-like PF05082.8 gi|336252705|ref|YP_004595812.1| - 2.4 7.6 7.5 1.3 8.5 0.8 2.9 2 1 1 3 3 3 0 Rop-like DUF4407 PF14362.1 gi|336252705|ref|YP_004595812.1| - 2.4 7.0 21.7 19 4.0 14.7 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) Katanin_con80 PF13925.1 gi|336252705|ref|YP_004595812.1| - 2.5 7.8 7.8 6.5 6.4 1.6 2.2 2 0 0 2 2 2 0 con80 domain of Katanin Vps53_N PF04100.7 gi|336252705|ref|YP_004595812.1| - 2.5 6.7 12.1 0.7 8.6 1.2 2.1 2 0 0 2 2 2 0 Vps53-like, N-terminal EMP24_GP25L PF01105.19 gi|336252705|ref|YP_004595812.1| - 2.6 7.7 16.0 4.3 7.0 3.3 2.1 2 0 0 2 2 2 0 emp24/gp25L/p24 family/GOLD Vfa1 PF08432.5 gi|336252705|ref|YP_004595812.1| - 2.6 8.0 14.3 11 5.9 9.9 1.8 1 1 0 1 1 1 0 AAA-ATPase Vps4-associated protein 1 HalX PF08663.5 gi|336252705|ref|YP_004595812.1| - 2.7 8.0 21.1 4 7.4 2.4 3.7 2 2 1 3 3 3 0 HalX domain H-kinase_dim PF02895.9 gi|336252705|ref|YP_004595812.1| - 2.7 8.3 20.6 3.6e+03 -1.7 13.8 2.8 1 1 0 1 1 0 0 Signal transducing histidine kinase, homodimeric domain DUF4504 PF14953.1 gi|336252705|ref|YP_004595812.1| - 2.7 7.1 7.0 0.52 9.5 0.4 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4504) V-ATPase_C PF03223.10 gi|336252705|ref|YP_004595812.1| - 3 6.6 8.0 0.88 8.4 0.4 2.0 2 0 0 2 2 2 0 V-ATPase subunit C Transposase_22 PF02994.9 gi|336252705|ref|YP_004595812.1| - 3 6.2 15.2 11 4.3 10.6 1.7 1 1 0 1 1 1 0 L1 transposable element PCRF PF03462.13 gi|336252705|ref|YP_004595812.1| - 3 7.5 13.5 4.8 6.9 2.5 2.4 2 0 0 2 2 2 0 PCRF domain RTBV_P46 PF06216.6 gi|336252705|ref|YP_004595812.1| - 3.1 6.5 9.7 2.6 6.7 1.4 2.0 2 0 0 2 2 2 0 Rice tungro bacilliform virus P46 protein DUF1515 PF07439.6 gi|336252705|ref|YP_004595812.1| - 3.3 7.5 11.6 0.93 9.3 1.6 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1515) IL6 PF00489.12 gi|336252705|ref|YP_004595812.1| - 3.5 7.1 10.9 0.64 9.5 0.7 2.1 2 0 0 2 2 2 0 Interleukin-6/G-CSF/MGF family Tweety PF04906.8 gi|336252705|ref|YP_004595812.1| - 3.6 5.8 6.8 1.2 7.5 0.3 2.0 2 0 0 2 2 2 0 Tweety BCAS2 PF05700.6 gi|336252705|ref|YP_004595812.1| - 3.7 6.9 20.1 1.5 8.1 4.7 2.2 2 0 0 2 2 2 0 Breast carcinoma amplified sequence 2 (BCAS2) GP41 PF00517.12 gi|336252705|ref|YP_004595812.1| - 3.7 7.0 16.5 2.4 7.6 2.7 2.3 2 0 0 2 2 2 0 Retroviral envelope protein ALIX_LYPXL_bnd PF13949.1 gi|336252705|ref|YP_004595812.1| - 3.7 6.4 23.1 2.3 7.0 6.7 2.1 1 1 0 2 2 2 0 ALIX V-shaped domain binding to HIV FTCD_C PF04961.7 gi|336252705|ref|YP_004595812.1| - 3.9 6.8 7.1 1.8 7.9 0.5 2.2 2 0 0 2 2 2 0 Formiminotransferase-cyclodeaminase ING PF12998.2 gi|336252705|ref|YP_004595812.1| - 4.1 7.7 15.6 6.5 7.0 2.0 2.3 2 0 0 2 2 2 0 Inhibitor of growth proteins N-terminal histone-binding Tho2 PF11262.3 gi|336252705|ref|YP_004595812.1| - 4.2 6.3 10.5 1.2 8.1 0.7 2.0 2 0 0 2 2 2 0 Transcription factor/nuclear export subunit protein 2 DUF2802 PF10975.3 gi|336252705|ref|YP_004595812.1| - 4.4 7.1 27.2 0.36 10.6 4.2 3.4 2 1 0 2 2 2 0 Protein of unknown function (DUF2802) UBN2_2 PF14227.1 gi|336252705|ref|YP_004595812.1| - 4.4 6.8 8.3 6.9 6.2 0.9 2.3 2 0 0 2 2 2 0 gag-polypeptide of LTR copia-type HrpB7 PF09486.5 gi|336252705|ref|YP_004595812.1| - 4.5 7.1 19.6 18 5.1 13.4 2.2 1 1 0 1 1 1 0 Bacterial type III secretion protein (HrpB7) DUF2400 PF09674.5 gi|336252705|ref|YP_004595812.1| - 4.7 6.8 6.7 10 5.6 0.4 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2400) DUF3287 PF11690.3 gi|336252705|ref|YP_004595812.1| - 4.7 7.3 6.8 11 6.0 1.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3287) DUF3740 PF12548.3 gi|336252705|ref|YP_004595812.1| - 4.8 7.4 8.3 7.2 6.8 2.4 2.3 2 0 0 2 2 2 0 Sulfatase protein Kinetocho_Slk19 PF12709.2 gi|336252705|ref|YP_004595812.1| - 4.9 7.3 20.9 4.9 7.2 3.7 2.5 2 1 0 2 2 2 0 Central kinetochore-associated PEARLI-4 PF05278.7 gi|336252705|ref|YP_004595812.1| - 4.9 6.4 10.7 6.3 6.0 0.8 2.1 1 1 0 2 2 2 0 Arabidopsis phospholipase-like protein (PEARLI 4) Acyl-CoA_dh_C PF12806.2 gi|336252705|ref|YP_004595812.1| - 5.5 6.8 14.5 5.8 6.7 1.4 2.5 2 1 0 2 2 2 0 Acetyl-CoA dehydrogenase C-terminal like MT PF12777.2 gi|336252705|ref|YP_004595812.1| - 5.8 5.5 9.1 7.8 5.1 0.5 2.1 2 0 0 2 2 2 0 Microtubule-binding stalk of dynein motor bZIP_2 PF07716.10 gi|336252705|ref|YP_004595812.1| - 6 6.7 29.4 5.8 6.8 7.2 3.1 2 1 0 2 2 2 0 Basic region leucine zipper PRTP PF01366.13 gi|336252705|ref|YP_004595812.1| - 6.5 4.6 9.6 11 3.9 6.7 1.3 1 1 0 1 1 1 0 Herpesvirus processing and transport protein Cep57_MT_bd PF06657.8 gi|336252705|ref|YP_004595812.1| - 6.6 6.7 20.4 1.8 8.5 2.9 2.8 2 1 0 2 2 2 0 Centrosome microtubule-binding domain of Cep57 ParB PF08775.5 gi|336252705|ref|YP_004595812.1| - 6.8 7.0 14.6 13 6.0 0.9 2.7 2 1 1 3 3 2 0 ParB family DUF3086 PF11285.3 gi|336252705|ref|YP_004595812.1| - 7.3 5.3 15.3 61 2.2 10.4 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF3086) DUF4208 PF13907.1 gi|336252705|ref|YP_004595812.1| - 7.4 6.8 8.3 13 6.0 0.5 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4208) CALCOCO1 PF07888.6 gi|336252705|ref|YP_004595812.1| - 7.4 4.7 20.7 1.5 6.9 5.6 2.0 2 0 0 2 2 2 0 Calcium binding and coiled-coil domain (CALCOCO1) like Med9 PF07544.8 gi|336252705|ref|YP_004595812.1| - 7.4 6.3 21.3 1.7 8.4 3.3 2.5 3 0 0 3 3 2 0 RNA polymerase II transcription mediator complex subunit 9 DASH_Dad3 PF08656.5 gi|336252705|ref|YP_004595812.1| - 7.5 6.3 14.6 1 9.0 3.3 2.7 2 1 0 2 2 2 0 DASH complex subunit Dad3 DUF1192 PF06698.6 gi|336252705|ref|YP_004595812.1| - 7.6 6.4 18.0 1.8 8.4 3.0 2.9 3 0 0 3 3 2 0 Protein of unknown function (DUF1192) Vps52 PF04129.7 gi|336252705|ref|YP_004595812.1| - 7.6 4.9 10.3 0.48 8.8 0.9 2.0 2 0 0 2 2 2 0 Vps52 / Sac2 family DUF2203 PF09969.4 gi|336252705|ref|YP_004595812.1| - 7.6 6.7 16.4 5.6 7.2 2.4 2.4 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2203) YlbD_coat PF14071.1 gi|336252705|ref|YP_004595812.1| - 8.5 6.4 15.4 5.8 6.9 2.5 2.3 2 0 0 2 2 2 0 Putative coat protein DUF2130 PF09903.4 gi|336252705|ref|YP_004595812.1| - 8.5 5.0 14.9 1.7 7.3 0.4 2.3 2 1 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2130) Hormone_1 PF00103.15 gi|336252705|ref|YP_004595812.1| - 8.8 5.6 8.7 11 5.3 0.6 2.1 2 0 0 2 2 2 0 Somatotropin hormone family DOR PF14839.1 gi|336252705|ref|YP_004595812.1| - 8.9 5.9 11.3 0.55 9.9 2.4 2.0 2 0 0 2 2 2 0 DOR family DUF2570 PF10828.3 gi|336252705|ref|YP_004595812.1| - 9.1 5.9 20.0 6.6 6.3 3.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2570) MutS_IV PF05190.13 gi|336252705|ref|YP_004595812.1| - 9.2 6.5 13.6 9.1 6.5 1.5 3.0 2 2 1 3 3 2 0 MutS family domain IV Filament PF00038.16 gi|336252705|ref|YP_004595812.1| - 9.5 5.5 26.6 1.2 8.5 6.0 2.1 1 1 1 2 2 2 0 Intermediate filament protein Potyvirid-P3 PF13608.1 gi|336252705|ref|YP_004595812.1| - 10 5.1 9.9 1.2 8.1 0.5 2.2 2 0 0 2 2 2 0 Protein P3 of Potyviral polyprotein SRP54 PF00448.17 gi|336252706|ref|YP_004595813.1| - 5.7e-68 228.2 0.1 8.1e-68 227.7 0.1 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.14 gi|336252706|ref|YP_004595813.1| - 1.5e-12 47.4 0.7 1.5e-12 47.4 0.5 2.0 2 0 0 2 2 2 1 SRP54-type protein, helical bundle domain APS_kinase PF01583.15 gi|336252706|ref|YP_004595813.1| - 1.7e-05 24.5 0.0 3e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 Adenylylsulphate kinase cobW PF02492.14 gi|336252706|ref|YP_004595813.1| - 0.00027 20.4 0.3 0.00055 19.4 0.2 1.5 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain CbiA PF01656.18 gi|336252706|ref|YP_004595813.1| - 0.00078 18.9 3.7 0.00084 18.7 0.6 2.4 2 1 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain MobB PF03205.9 gi|336252706|ref|YP_004595813.1| - 0.00083 19.0 0.2 0.002 17.8 0.1 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B Thymidylate_kin PF02223.12 gi|336252706|ref|YP_004595813.1| - 0.0011 18.3 0.1 0.023 14.0 0.0 2.6 2 0 0 2 2 2 1 Thymidylate kinase Zeta_toxin PF06414.7 gi|336252706|ref|YP_004595813.1| - 0.0012 18.0 0.1 0.0012 18.0 0.1 1.7 2 0 0 2 2 2 1 Zeta toxin AAA_30 PF13604.1 gi|336252706|ref|YP_004595813.1| - 0.0012 18.4 0.5 0.0012 18.4 0.4 2.1 2 1 0 2 2 1 1 AAA domain 6PF2K PF01591.13 gi|336252706|ref|YP_004595813.1| - 0.0023 17.0 0.0 0.0043 16.1 0.0 1.4 1 0 0 1 1 1 1 6-phosphofructo-2-kinase AAA_22 PF13401.1 gi|336252706|ref|YP_004595813.1| - 0.0024 18.0 0.1 0.014 15.5 0.0 2.1 2 0 0 2 2 2 1 AAA domain NTPase_1 PF03266.10 gi|336252706|ref|YP_004595813.1| - 0.0057 16.3 0.2 0.02 14.6 0.0 1.9 2 0 0 2 2 2 1 NTPase KTI12 PF08433.5 gi|336252706|ref|YP_004595813.1| - 0.0066 15.6 0.0 0.011 14.9 0.0 1.2 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_28 PF13521.1 gi|336252706|ref|YP_004595813.1| - 0.0071 16.3 0.1 0.0071 16.3 0.1 3.4 3 1 0 3 3 3 1 AAA domain AAA_33 PF13671.1 gi|336252706|ref|YP_004595813.1| - 0.0096 15.7 0.0 0.018 14.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain ATP_bind_1 PF03029.12 gi|336252706|ref|YP_004595813.1| - 0.024 14.1 0.0 0.044 13.3 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_16 PF13191.1 gi|336252706|ref|YP_004595813.1| - 0.031 14.2 0.0 0.031 14.2 0.0 3.0 2 1 0 2 2 1 0 AAA ATPase domain PPK2 PF03976.9 gi|336252706|ref|YP_004595813.1| - 0.041 13.1 0.0 0.066 12.4 0.0 1.2 1 0 0 1 1 1 0 Polyphosphate kinase 2 (PPK2) AAA_29 PF13555.1 gi|336252706|ref|YP_004595813.1| - 0.085 12.3 0.0 0.23 11.0 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain Lipase_2 PF01674.13 gi|336252706|ref|YP_004595813.1| - 0.15 11.3 0.0 0.22 10.8 0.0 1.2 1 0 0 1 1 1 0 Lipase (class 2) NIR_SIR PF01077.17 gi|336252707|ref|YP_004595814.1| - 1.4e-51 173.9 0.0 1.9e-35 121.5 0.0 2.4 2 0 0 2 2 2 2 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.12 gi|336252707|ref|YP_004595814.1| - 1.9e-27 94.6 0.0 1.8e-12 46.6 0.0 3.3 3 1 0 3 3 3 2 Nitrite/Sulfite reductase ferredoxin-like half domain DGC PF08859.6 gi|336252707|ref|YP_004595814.1| - 0.0072 16.1 0.0 0.12 12.2 0.0 2.4 2 0 0 2 2 2 1 DGC domain Peptidase_MA_2 PF13485.1 gi|336252707|ref|YP_004595814.1| - 0.058 13.4 0.1 1.6 8.7 0.0 2.4 2 0 0 2 2 2 0 Peptidase MA superfamily DUF1932 PF09130.6 gi|336252707|ref|YP_004595814.1| - 0.1 12.3 0.0 0.69 9.6 0.0 2.4 3 0 0 3 3 3 0 Domain of unknown function (DUF1932) zf-HC2 PF13490.1 gi|336252707|ref|YP_004595814.1| - 0.28 11.1 3.1 16 5.5 0.5 2.8 2 0 0 2 2 2 0 Putative zinc-finger FrhB_FdhB_C PF04432.8 gi|336252708|ref|YP_004595815.1| - 9e-30 103.2 0.0 9e-30 103.2 0.0 1.8 2 0 0 2 2 2 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.8 gi|336252708|ref|YP_004595815.1| - 8.3e-21 73.6 0.1 1.8e-20 72.5 0.1 1.5 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_21 PF14697.1 gi|336252708|ref|YP_004595815.1| - 1.4e-09 37.6 6.4 1.4e-09 37.6 4.4 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|336252708|ref|YP_004595815.1| - 2.5e-09 36.3 18.0 4.6e-07 29.1 2.9 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|336252708|ref|YP_004595815.1| - 8.7e-08 31.8 12.6 1.8e-07 30.8 7.1 2.6 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|336252708|ref|YP_004595815.1| - 1.5e-07 31.5 8.5 1.5e-07 31.5 5.9 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|336252708|ref|YP_004595815.1| - 2.4e-07 30.2 18.3 4.4e-06 26.2 2.9 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|336252708|ref|YP_004595815.1| - 8.3e-07 29.6 8.2 0.01 16.5 1.0 3.8 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_7 PF12838.2 gi|336252708|ref|YP_004595815.1| - 1.4e-06 28.6 13.0 3.4e-06 27.3 7.2 2.9 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|336252708|ref|YP_004595815.1| - 1e-05 25.7 4.9 0.0077 16.5 0.1 2.9 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|336252708|ref|YP_004595815.1| - 1.2e-05 24.8 3.4 1.2e-05 24.8 2.4 3.3 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_18 PF13746.1 gi|336252708|ref|YP_004595815.1| - 2e-05 24.9 8.9 0.0064 16.8 0.1 3.0 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|336252708|ref|YP_004595815.1| - 5.9e-05 23.0 19.9 0.0062 16.7 2.9 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|336252708|ref|YP_004595815.1| - 0.0057 16.6 14.4 0.012 15.6 8.0 2.7 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|336252708|ref|YP_004595815.1| - 0.012 15.9 13.7 0.14 12.5 3.1 3.1 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|336252708|ref|YP_004595815.1| - 0.24 11.9 16.5 0.047 14.2 2.2 3.8 3 1 1 4 4 2 0 4Fe-4S single cluster domain PAP2 PF01569.16 gi|336252709|ref|YP_004595816.1| - 1.4e-18 66.8 3.4 1.4e-18 66.8 2.4 2.2 3 0 0 3 3 3 1 PAP2 superfamily PAP2_3 PF14378.1 gi|336252709|ref|YP_004595816.1| - 1.1e-06 28.2 2.0 1.9e-06 27.5 1.4 1.5 1 0 0 1 1 1 1 PAP2 superfamily PAP2_C PF14360.1 gi|336252709|ref|YP_004595816.1| - 0.022 14.9 0.3 0.058 13.6 0.2 1.7 1 0 0 1 1 1 0 PAP2 superfamily C-terminal Bactofilin PF04519.8 gi|336252710|ref|YP_004595817.1| - 1.5e-09 37.7 4.5 4.5e-09 36.2 2.8 1.9 1 1 0 1 1 1 1 Polymer-forming cytoskeletal Hexapep PF00132.19 gi|336252710|ref|YP_004595817.1| - 0.09 12.3 5.3 0.15 11.6 0.8 3.0 3 1 0 3 3 3 0 Bacterial transferase hexapeptide (six repeats) DUF342 PF03961.8 gi|336252710|ref|YP_004595817.1| - 0.46 8.8 8.9 0.74 8.1 4.5 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF342) Acetyltransf_4 PF13420.1 gi|336252711|ref|YP_004595818.1| - 6.6e-32 110.6 0.0 7.7e-32 110.3 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|336252711|ref|YP_004595818.1| - 1.7e-12 47.1 0.2 2.6e-12 46.5 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|336252711|ref|YP_004595818.1| - 9.8e-11 41.8 0.1 1.4e-10 41.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|336252711|ref|YP_004595818.1| - 6.8e-09 35.7 0.1 1.1e-08 35.1 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|336252711|ref|YP_004595818.1| - 4.9e-07 29.8 0.0 7.1e-07 29.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|336252711|ref|YP_004595818.1| - 1.6e-06 28.3 0.0 2.1e-06 27.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|336252711|ref|YP_004595818.1| - 0.0024 17.5 0.0 0.0045 16.6 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.1 gi|336252711|ref|YP_004595818.1| - 0.04 13.7 0.1 0.083 12.7 0.1 1.6 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Abhydrolase_2 PF02230.11 gi|336252712|ref|YP_004595819.1| - 1.7e-23 83.2 0.0 6.8e-23 81.2 0.0 1.7 1 1 0 1 1 1 1 Phospholipase/Carboxylesterase Abhydrolase_5 PF12695.2 gi|336252712|ref|YP_004595819.1| - 2.7e-14 53.1 0.0 3.3e-14 52.8 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|336252712|ref|YP_004595819.1| - 7.8e-12 45.5 0.3 1.1e-07 31.9 0.0 2.1 1 1 1 2 2 2 2 Alpha/beta hydrolase family DLH PF01738.13 gi|336252712|ref|YP_004595819.1| - 2.9e-09 36.5 0.0 3.7e-09 36.1 0.0 1.1 1 0 0 1 1 1 1 Dienelactone hydrolase family Peptidase_S9 PF00326.16 gi|336252712|ref|YP_004595819.1| - 1.1e-05 24.7 0.8 0.037 13.2 0.0 3.1 3 0 0 3 3 3 2 Prolyl oligopeptidase family Abhydrolase_1 PF00561.15 gi|336252712|ref|YP_004595819.1| - 8.6e-05 22.1 0.0 0.00054 19.5 0.0 1.8 1 1 1 2 2 2 1 alpha/beta hydrolase fold Esterase_phd PF10503.4 gi|336252712|ref|YP_004595819.1| - 0.00048 19.4 0.0 0.00058 19.1 0.0 1.2 1 0 0 1 1 1 1 Esterase PHB depolymerase Abhydrolase_3 PF07859.8 gi|336252712|ref|YP_004595819.1| - 0.0011 18.5 0.2 0.74 9.3 0.0 2.3 1 1 1 2 2 2 2 alpha/beta hydrolase fold FSH1 PF03959.8 gi|336252712|ref|YP_004595819.1| - 0.0021 17.5 0.0 0.003 17.0 0.0 1.3 1 1 0 1 1 1 1 Serine hydrolase (FSH1) PE-PPE PF08237.6 gi|336252712|ref|YP_004595819.1| - 0.0059 16.0 0.0 0.013 14.9 0.0 1.5 2 0 0 2 2 2 1 PE-PPE domain Hydrolase_4 PF12146.3 gi|336252712|ref|YP_004595819.1| - 0.043 13.6 0.1 0.69 9.8 0.0 2.4 2 0 0 2 2 2 0 Putative lysophospholipase Cutinase PF01083.17 gi|336252712|ref|YP_004595819.1| - 0.13 11.9 0.0 0.18 11.5 0.0 1.3 1 0 0 1 1 1 0 Cutinase Glyoxalase PF00903.20 gi|336252713|ref|YP_004595820.1| - 5.6e-10 39.2 0.1 8.6e-10 38.6 0.1 1.3 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.1 gi|336252713|ref|YP_004595820.1| - 1.5e-07 31.3 0.0 3e-07 30.4 0.0 1.5 2 0 0 2 2 2 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.2 gi|336252713|ref|YP_004595820.1| - 3e-07 31.0 0.1 6.9e-07 29.8 0.0 1.6 2 0 0 2 2 2 1 Glyoxalase-like domain Pyr_redox_2 PF07992.9 gi|336252714|ref|YP_004595821.1| - 3.4e-20 72.7 3.1 4.6e-15 56.0 0.1 2.2 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|336252714|ref|YP_004595821.1| - 2.3e-14 53.0 1.0 2.8e-07 29.7 0.0 2.1 1 1 1 2 2 2 2 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|336252714|ref|YP_004595821.1| - 9.5e-10 37.4 0.4 2.4e-05 22.9 0.1 2.2 1 1 1 2 2 2 2 HI0933-like protein FAD_binding_3 PF01494.14 gi|336252714|ref|YP_004595821.1| - 1e-08 34.6 1.6 4.8e-05 22.5 0.0 2.1 2 0 0 2 2 2 2 FAD binding domain Pyr_redox_3 PF13738.1 gi|336252714|ref|YP_004595821.1| - 4.2e-08 33.5 2.1 0.00043 20.3 0.1 2.2 1 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|336252714|ref|YP_004595821.1| - 2.8e-07 29.7 3.2 4.4e-06 25.8 0.2 2.2 1 1 1 2 2 2 1 FAD binding domain GIDA PF01134.17 gi|336252714|ref|YP_004595821.1| - 6.3e-07 28.6 3.7 1.9e-05 23.7 0.2 2.7 1 1 1 3 3 3 1 Glucose inhibited division protein A NAD_binding_9 PF13454.1 gi|336252714|ref|YP_004595821.1| - 2.2e-06 27.5 1.1 0.0013 18.4 0.2 2.3 2 0 0 2 2 2 2 FAD-NAD(P)-binding NAD_binding_8 PF13450.1 gi|336252714|ref|YP_004595821.1| - 2.1e-05 24.4 0.1 5e-05 23.2 0.0 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.12 gi|336252714|ref|YP_004595821.1| - 4.1e-05 22.7 0.2 7.6e-05 21.9 0.1 1.6 1 1 0 1 1 1 1 Thi4 family Pyr_redox PF00070.22 gi|336252714|ref|YP_004595821.1| - 0.00064 20.0 0.9 0.0064 16.8 0.3 2.4 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|336252714|ref|YP_004595821.1| - 0.0007 18.7 0.2 0.0007 18.7 0.1 2.1 2 1 0 2 2 2 1 FAD dependent oxidoreductase Amino_oxidase PF01593.19 gi|336252714|ref|YP_004595821.1| - 0.0059 15.7 0.2 0.029 13.4 0.0 1.8 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase Lycopene_cycl PF05834.7 gi|336252714|ref|YP_004595821.1| - 0.0079 15.1 0.5 0.097 11.5 0.1 2.0 1 1 1 2 2 2 1 Lycopene cyclase protein Trp_halogenase PF04820.9 gi|336252714|ref|YP_004595821.1| - 0.016 13.8 3.9 0.69 8.4 0.3 2.2 2 0 0 2 2 2 0 Tryptophan halogenase K_oxygenase PF13434.1 gi|336252714|ref|YP_004595821.1| - 0.035 13.0 0.2 2 7.2 0.0 2.1 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) 3HCDH_N PF02737.13 gi|336252714|ref|YP_004595821.1| - 0.058 13.0 0.2 0.11 12.1 0.1 1.4 1 1 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Phage_G PF02306.10 gi|336252714|ref|YP_004595821.1| - 0.074 12.6 0.5 0.51 9.9 0.1 2.0 1 1 1 2 2 2 0 Major spike protein (G protein) NAD_binding_7 PF13241.1 gi|336252714|ref|YP_004595821.1| - 0.088 13.0 0.1 0.19 12.0 0.0 1.6 1 1 0 1 1 1 0 Putative NAD(P)-binding AlaDh_PNT_C PF01262.16 gi|336252714|ref|YP_004595821.1| - 0.12 11.9 0.8 0.37 10.3 0.0 2.0 2 1 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain GCS2 PF04107.8 gi|336252715|ref|YP_004595822.1| - 2e-11 43.5 0.8 4.5e-11 42.3 0.5 1.5 1 1 0 1 1 1 1 Glutamate-cysteine ligase family 2(GCS2) AAT PF03417.11 gi|336252716|ref|YP_004595823.1| - 1.7e-15 57.0 0.0 2.6e-15 56.4 0.0 1.2 1 0 0 1 1 1 1 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase CBAH PF02275.13 gi|336252716|ref|YP_004595823.1| - 0.0079 15.6 0.0 0.024 14.0 0.0 1.7 1 1 0 1 1 1 1 Linear amide C-N hydrolases, choloylglycine hydrolase family DUF1628 PF07790.6 gi|336252717|ref|YP_004595824.1| - 1.1e-16 61.3 5.5 2.2e-16 60.3 3.8 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF1628) Phage_integrase PF00589.17 gi|336252718|ref|YP_004595825.1| - 3.8e-12 46.2 0.0 1.1e-11 44.6 0.0 1.8 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.12 gi|336252718|ref|YP_004595825.1| - 1.5e-06 28.2 0.3 6.7e-06 26.1 0.1 2.2 3 0 0 3 3 3 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.1 gi|336252718|ref|YP_004595825.1| - 0.015 15.6 0.1 0.28 11.5 0.0 2.4 1 1 0 2 2 2 0 Phage integrase, N-terminal SAM-like domain HTH_27 PF13463.1 gi|336252719|ref|YP_004595826.1| - 8.2e-05 22.8 0.1 0.00017 21.8 0.1 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|336252719|ref|YP_004595826.1| - 0.0035 17.1 0.0 0.0057 16.4 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_20 PF12840.2 gi|336252719|ref|YP_004595826.1| - 0.0036 17.0 0.1 0.0049 16.6 0.1 1.4 1 1 0 1 1 1 1 Helix-turn-helix domain PaaX PF07848.7 gi|336252719|ref|YP_004595826.1| - 0.016 15.1 0.0 0.024 14.6 0.0 1.5 1 1 0 1 1 1 0 PaaX-like protein HTH_24 PF13412.1 gi|336252719|ref|YP_004595826.1| - 0.018 14.4 0.0 0.1 11.9 0.0 2.1 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding PadR PF03551.9 gi|336252719|ref|YP_004595826.1| - 0.043 13.5 0.0 0.068 12.9 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family MarR_2 PF12802.2 gi|336252719|ref|YP_004595826.1| - 0.049 13.2 0.0 0.099 12.3 0.0 1.4 1 0 0 1 1 1 0 MarR family DUF2084 PF09857.4 gi|336252719|ref|YP_004595826.1| - 0.1 12.3 0.0 0.13 12.0 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2084) Mrr_N PF14338.1 gi|336252719|ref|YP_004595826.1| - 0.13 12.3 0.1 0.16 12.0 0.1 1.4 1 1 0 1 1 1 0 Mrr N-terminal domain DUF4414 PF14377.1 gi|336252720|ref|YP_004595827.1| - 0.097 12.5 0.0 0.22 11.4 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4414) DUF1628 PF07790.6 gi|336252721|ref|YP_004595828.1| - 8.6e-17 61.6 6.5 1.4e-16 61.0 4.5 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF1628) DUF3068 PF11271.3 gi|336252721|ref|YP_004595828.1| - 0.11 11.5 0.3 0.13 11.2 0.2 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3068) DUF3060 PF11259.3 gi|336252721|ref|YP_004595828.1| - 1.7 8.3 5.6 1.9 8.1 0.8 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3060) DUF4019 PF13211.1 gi|336252724|ref|YP_004595831.1| - 0.0064 16.7 0.2 0.01 16.0 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF4019) DUF1177 PF06675.6 gi|336252724|ref|YP_004595831.1| - 0.015 13.9 0.9 0.022 13.3 0.4 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1177) Cadherin-like PF12733.2 gi|336252726|ref|YP_004595833.1| - 0.033 14.4 0.8 0.063 13.5 0.6 1.6 1 1 0 1 1 1 0 Cadherin-like beta sandwich domain Neurokinin_B PF03823.9 gi|336252726|ref|YP_004595833.1| - 0.034 13.9 0.2 0.055 13.2 0.1 1.4 1 0 0 1 1 1 0 Neurokinin B DUF2244 PF10003.4 gi|336252726|ref|YP_004595833.1| - 0.18 11.1 1.0 0.6 9.4 0.0 2.0 2 0 0 2 2 2 0 Integral membrane protein (DUF2244) Sigma54_activ_2 PF14532.1 gi|336252728|ref|YP_004595835.1| - 0.0062 16.5 0.0 0.012 15.6 0.0 1.4 1 0 0 1 1 1 1 Sigma-54 interaction domain HTH_28 PF13518.1 gi|336252728|ref|YP_004595835.1| - 0.019 14.9 0.1 0.045 13.7 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_38 PF13936.1 gi|336252728|ref|YP_004595835.1| - 0.1 12.1 0.0 0.19 11.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain UPF0079 PF02367.12 gi|336252728|ref|YP_004595835.1| - 0.11 12.0 0.2 0.27 10.8 0.0 1.6 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 HTH_23 PF13384.1 gi|336252730|ref|YP_004595837.1| - 0.00049 19.6 0.2 0.00085 18.9 0.1 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.1 gi|336252730|ref|YP_004595837.1| - 0.0028 17.6 0.1 0.0048 16.8 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|336252730|ref|YP_004595837.1| - 0.0069 15.8 0.0 0.015 14.7 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_38 PF13936.1 gi|336252730|ref|YP_004595837.1| - 0.019 14.4 0.0 0.036 13.6 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.1 gi|336252730|ref|YP_004595837.1| - 0.081 13.0 0.0 0.15 12.2 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix DUF4330 PF14221.1 gi|336252732|ref|YP_004595839.1| - 0.0011 18.8 0.0 0.0014 18.5 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4330) FlgD_ig PF13860.1 gi|336252732|ref|YP_004595839.1| - 0.067 12.9 0.0 2.1 8.1 0.0 2.3 2 1 0 2 2 2 0 FlgD Ig-like domain LptC PF06835.8 gi|336252732|ref|YP_004595839.1| - 0.094 12.1 0.0 0.11 11.9 0.0 1.2 1 0 0 1 1 1 0 Lipopolysaccharide-assembly, LptC-related HTH_17 PF12728.2 gi|336252733|ref|YP_004595840.1| - 0.02 15.1 0.1 0.82 9.9 0.0 3.4 4 0 0 4 4 4 0 Helix-turn-helix domain HTH_38 PF13936.1 gi|336252733|ref|YP_004595840.1| - 0.032 13.8 0.0 0.077 12.5 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain RNA_Me_trans PF04252.8 gi|336252733|ref|YP_004595840.1| - 0.14 11.5 0.0 0.27 10.6 0.0 1.3 1 0 0 1 1 1 0 Predicted SAM-dependent RNA methyltransferase zf-HIT PF04438.11 gi|336252734|ref|YP_004595841.1| - 0.0067 16.0 1.1 0.0081 15.7 0.7 1.2 1 0 0 1 1 1 1 HIT zinc finger zinc-ribbons_6 PF07191.7 gi|336252734|ref|YP_004595841.1| - 0.016 14.9 0.7 0.018 14.8 0.5 1.1 1 0 0 1 1 1 0 zinc-ribbons DZR PF12773.2 gi|336252734|ref|YP_004595841.1| - 0.02 14.6 1.2 0.04 13.7 0.8 1.4 1 1 0 1 1 1 0 Double zinc ribbon zf-C4_Topoisom PF01396.14 gi|336252734|ref|YP_004595841.1| - 0.025 14.0 1.0 0.43 10.1 0.0 2.1 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-C2H2_6 PF13912.1 gi|336252734|ref|YP_004595841.1| - 0.029 14.2 0.9 2.8 7.9 0.1 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger Zn-ribbon_8 PF09723.5 gi|336252734|ref|YP_004595841.1| - 0.032 14.1 5.2 0.79 9.7 0.3 2.1 1 1 1 2 2 2 0 Zinc ribbon domain Ogr_Delta PF04606.7 gi|336252734|ref|YP_004595841.1| - 0.052 13.1 1.2 1.4 8.6 0.0 2.1 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zinc_ribbon_2 PF13240.1 gi|336252734|ref|YP_004595841.1| - 0.058 12.8 1.5 0.72 9.4 1.1 2.0 1 1 0 1 1 1 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|336252734|ref|YP_004595841.1| - 0.069 12.3 2.9 0.72 9.1 0.1 2.1 1 1 1 2 2 2 0 zinc-ribbon domain Desulfoferrod_N PF06397.7 gi|336252734|ref|YP_004595841.1| - 0.075 12.4 0.1 0.075 12.4 0.0 1.6 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain RRN7 PF11781.3 gi|336252734|ref|YP_004595841.1| - 0.089 12.3 0.3 0.089 12.3 0.2 2.0 1 1 1 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 DNA_ligase_ZBD PF03119.11 gi|336252734|ref|YP_004595841.1| - 0.1 12.3 6.1 5.8 6.7 2.9 2.7 1 1 1 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain DUF3797 PF12677.2 gi|336252734|ref|YP_004595841.1| - 0.13 11.9 2.0 0.97 9.1 0.0 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) zf-Mss51 PF13824.1 gi|336252734|ref|YP_004595841.1| - 0.13 12.1 1.5 0.17 11.7 1.1 1.1 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 A2L_zn_ribbon PF08792.5 gi|336252734|ref|YP_004595841.1| - 0.13 11.7 0.4 0.86 9.1 0.0 2.0 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-B_box PF00643.19 gi|336252734|ref|YP_004595841.1| - 0.13 12.1 0.8 0.16 11.8 0.6 1.1 1 0 0 1 1 1 0 B-box zinc finger tRNA-synt_1g PF09334.6 gi|336252734|ref|YP_004595841.1| - 0.15 10.6 0.4 0.14 10.7 0.3 1.0 1 0 0 1 1 1 0 tRNA synthetases class I (M) zf-MYND PF01753.13 gi|336252734|ref|YP_004595841.1| - 0.16 11.8 1.6 0.18 11.6 1.1 1.1 1 0 0 1 1 1 0 MYND finger Lar_restr_allev PF14354.1 gi|336252734|ref|YP_004595841.1| - 0.19 12.0 3.6 5.3 7.4 2.5 2.0 1 1 0 1 1 1 0 Restriction alleviation protein Lar UPF0547 PF10571.4 gi|336252734|ref|YP_004595841.1| - 0.23 11.1 5.9 0.91 9.2 4.1 1.8 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 TFIIS_C PF01096.13 gi|336252734|ref|YP_004595841.1| - 0.3 10.7 3.4 1.8 8.2 0.1 2.1 1 1 1 2 2 2 0 Transcription factor S-II (TFIIS) zf-IS66 PF13005.2 gi|336252734|ref|YP_004595841.1| - 0.31 11.0 4.1 1.9 8.5 0.2 2.1 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 OrfB_Zn_ribbon PF07282.6 gi|336252734|ref|YP_004595841.1| - 0.33 10.6 2.2 0.46 10.1 1.5 1.3 1 1 0 1 1 1 0 Putative transposase DNA-binding domain C1_2 PF03107.11 gi|336252734|ref|YP_004595841.1| - 0.41 10.8 2.7 0.69 10.0 1.9 1.4 1 1 0 1 1 1 0 C1 domain ADK_lid PF05191.9 gi|336252734|ref|YP_004595841.1| - 0.6 9.8 3.0 3.1 7.5 2.1 2.0 1 1 0 1 1 1 0 Adenylate kinase, active site lid zf-H2C2_2 PF13465.1 gi|336252734|ref|YP_004595841.1| - 0.74 10.2 3.5 16 6.0 0.3 2.1 1 1 1 2 2 2 0 Zinc-finger double domain C1_3 PF07649.7 gi|336252734|ref|YP_004595841.1| - 0.75 9.8 3.6 1.6 8.8 2.5 1.6 1 1 0 1 1 1 0 C1-like domain Zn_Tnp_IS1595 PF12760.2 gi|336252734|ref|YP_004595841.1| - 0.8 9.5 4.3 2.5 7.9 3.0 1.7 1 1 0 1 1 1 0 Transposase zinc-ribbon domain Rubredoxin PF00301.15 gi|336252734|ref|YP_004595841.1| - 1.1 9.1 4.9 7 6.6 0.5 2.2 1 1 1 2 2 2 0 Rubredoxin TF_Zn_Ribbon PF08271.7 gi|336252734|ref|YP_004595841.1| - 1.2 8.5 5.7 11 5.3 3.9 2.1 1 1 0 1 1 1 0 TFIIB zinc-binding Nudix_N_2 PF14803.1 gi|336252734|ref|YP_004595841.1| - 2.1 8.1 6.2 0.4 10.4 0.8 1.9 2 0 0 2 2 2 0 Nudix N-terminal DUF1610 PF07754.6 gi|336252734|ref|YP_004595841.1| - 5.1 7.3 7.7 1.6 8.8 0.3 2.3 2 1 1 3 3 3 0 Domain of unknown function (DUF1610) Zn_Tnp_IS1 PF03811.8 gi|336252734|ref|YP_004595841.1| - 7.9 6.0 7.0 6.3 6.3 0.9 2.1 1 1 1 2 2 2 0 InsA N-terminal domain zf-RING_3 PF14369.1 gi|336252736|ref|YP_004595843.1| - 0.0043 17.0 1.1 1.2 9.1 0.1 2.3 2 0 0 2 2 2 2 zinc-finger DZR PF12773.2 gi|336252736|ref|YP_004595843.1| - 0.078 12.8 0.2 0.11 12.3 0.1 1.2 1 0 0 1 1 1 0 Double zinc ribbon FdhE PF04216.7 gi|336252736|ref|YP_004595843.1| - 0.1 12.3 0.0 0.11 12.1 0.0 1.0 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation zf-H2C2_5 PF13909.1 gi|336252736|ref|YP_004595843.1| - 0.59 10.4 3.4 14 6.1 0.2 2.2 2 0 0 2 2 2 0 C2H2-type zinc-finger domain C1_4 PF07975.7 gi|336252736|ref|YP_004595843.1| - 3.3 7.8 5.1 1.1e+02 2.8 3.5 2.1 1 1 0 1 1 1 0 TFIIH C1-like domain ExoD PF06055.7 gi|336252737|ref|YP_004595844.1| - 0.76 8.8 7.4 0.86 8.6 5.2 1.1 1 0 0 1 1 1 0 Exopolysaccharide synthesis, ExoD DUF3953 PF13129.1 gi|336252737|ref|YP_004595844.1| - 2.6 7.7 9.9 3.5 7.3 0.9 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3953) DUF1700 PF08006.6 gi|336252737|ref|YP_004595844.1| - 3.3 6.9 4.8 3.6 6.8 3.3 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1700) IncA PF04156.9 gi|336252737|ref|YP_004595844.1| - 3.3 7.2 14.8 3.6 7.1 10.2 1.0 1 0 0 1 1 1 0 IncA protein Adeno_E3_CR2 PF02439.10 gi|336252737|ref|YP_004595844.1| - 5.1 6.7 7.1 8 6.1 2.0 2.1 2 0 0 2 2 2 0 Adenovirus E3 region protein CR2 AAA_18 PF13238.1 gi|336252738|ref|YP_004595845.1| - 1.7e-13 50.9 0.0 2.7e-13 50.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|336252738|ref|YP_004595845.1| - 3.8e-10 40.6 0.2 6.4e-10 39.9 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|336252738|ref|YP_004595845.1| - 3.8e-07 30.0 0.0 7.5e-07 29.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain ADK PF00406.17 gi|336252738|ref|YP_004595845.1| - 2.4e-05 24.2 0.0 3.4e-05 23.7 0.0 1.2 1 0 0 1 1 1 1 Adenylate kinase RNA_binding PF01877.12 gi|336252739|ref|YP_004595846.1| - 3.5e-24 85.1 0.6 1e-23 83.6 0.4 1.7 1 1 0 1 1 1 1 RNA binding Reo_sigmaC PF04582.7 gi|336252740|ref|YP_004595847.1| - 0.014 14.5 3.4 0.02 14.0 2.4 1.2 1 0 0 1 1 1 0 Reovirus sigma C capsid protein DUF1002 PF06207.6 gi|336252740|ref|YP_004595847.1| - 0.052 12.8 0.9 0.25 10.6 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1002) CENP-F_leu_zip PF10473.4 gi|336252740|ref|YP_004595847.1| - 0.077 12.8 7.7 0.11 12.3 0.7 2.8 2 1 1 3 3 3 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Prefoldin_2 PF01920.15 gi|336252740|ref|YP_004595847.1| - 0.085 12.6 1.6 2.3 8.0 1.3 2.4 1 1 1 2 2 2 0 Prefoldin subunit DUF4398 PF14346.1 gi|336252740|ref|YP_004595847.1| - 0.16 12.0 30.5 1.5 8.9 0.1 5.0 3 2 2 5 5 5 0 Domain of unknown function (DUF4398) Spc7 PF08317.6 gi|336252740|ref|YP_004595847.1| - 0.35 9.4 2.5 6.9 5.2 0.1 2.1 1 1 1 2 2 2 0 Spc7 kinetochore protein SRP54 PF00448.17 gi|336252741|ref|YP_004595848.1| - 1.3e-63 214.0 0.1 2.6e-63 213.0 0.1 1.5 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.14 gi|336252741|ref|YP_004595848.1| - 1.1e-29 102.7 5.2 1.1e-29 102.7 3.6 3.1 3 1 1 4 4 3 1 Signal peptide binding domain SRP54_N PF02881.14 gi|336252741|ref|YP_004595848.1| - 1.6e-14 53.7 0.3 1.6e-14 53.7 0.2 2.4 3 1 1 4 4 3 1 SRP54-type protein, helical bundle domain CARD PF00619.16 gi|336252741|ref|YP_004595848.1| - 0.00047 19.9 0.4 0.19 11.5 0.1 2.6 2 0 0 2 2 2 1 Caspase recruitment domain AAA_25 PF13481.1 gi|336252741|ref|YP_004595848.1| - 0.001 18.4 1.3 0.0023 17.3 0.3 2.0 2 1 0 2 2 2 1 AAA domain Zeta_toxin PF06414.7 gi|336252741|ref|YP_004595848.1| - 0.0014 17.7 0.2 0.0074 15.4 0.0 2.2 2 0 0 2 2 2 1 Zeta toxin CbiA PF01656.18 gi|336252741|ref|YP_004595848.1| - 0.0017 17.7 0.1 0.011 15.1 0.0 2.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain cobW PF02492.14 gi|336252741|ref|YP_004595848.1| - 0.0021 17.5 0.5 0.021 14.2 0.3 2.3 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_10 PF12846.2 gi|336252741|ref|YP_004595848.1| - 0.0026 17.2 1.1 0.0033 16.9 0.4 1.4 1 1 0 1 1 1 1 AAA-like domain DUF2202 PF09968.4 gi|336252741|ref|YP_004595848.1| - 0.0039 16.8 0.4 0.01 15.4 0.1 1.8 2 0 0 2 2 2 1 Uncharacterized protein domain (DUF2202) AAA_22 PF13401.1 gi|336252741|ref|YP_004595848.1| - 0.0041 17.2 0.1 0.097 12.8 0.0 2.8 3 0 0 3 3 3 1 AAA domain MobB PF03205.9 gi|336252741|ref|YP_004595848.1| - 0.0086 15.7 0.0 0.024 14.3 0.0 1.8 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B APS_kinase PF01583.15 gi|336252741|ref|YP_004595848.1| - 0.028 14.0 0.0 0.074 12.7 0.0 1.7 1 0 0 1 1 1 0 Adenylylsulphate kinase SMC_N PF02463.14 gi|336252741|ref|YP_004595848.1| - 0.043 13.0 0.0 0.075 12.2 0.0 1.4 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_33 PF13671.1 gi|336252741|ref|YP_004595848.1| - 0.045 13.6 0.0 0.1 12.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain ArsA_ATPase PF02374.10 gi|336252741|ref|YP_004595848.1| - 0.093 11.7 0.0 0.093 11.7 0.0 2.6 2 1 0 3 3 3 0 Anion-transporting ATPase KTI12 PF08433.5 gi|336252741|ref|YP_004595848.1| - 0.097 11.8 0.0 0.23 10.6 0.0 1.6 1 0 0 1 1 1 0 Chromatin associated protein KTI12 DUF4618 PF15397.1 gi|336252741|ref|YP_004595848.1| - 0.11 11.8 2.9 0.19 11.0 0.5 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4618) HAD_2 PF13419.1 gi|336252742|ref|YP_004595849.1| - 3e-28 99.2 1.7 3.5e-28 98.9 1.2 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|336252742|ref|YP_004595849.1| - 7e-05 23.3 1.9 0.00029 21.3 1.3 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|336252742|ref|YP_004595849.1| - 0.00021 20.9 0.0 0.0006 19.4 0.0 1.8 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.2 gi|336252742|ref|YP_004595849.1| - 0.007 16.5 0.0 0.008 16.3 0.0 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase UPF0150 PF03681.10 gi|336252743|ref|YP_004595850.1| - 0.012 15.1 0.1 0.021 14.4 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0150) Usp PF00582.21 gi|336252744|ref|YP_004595851.1| - 4.1e-59 198.7 13.7 1e-31 109.9 1.4 2.0 2 0 0 2 2 2 2 Universal stress protein family DUF106 PF01956.11 gi|336252745|ref|YP_004595852.1| - 4.1e-19 68.7 0.0 5.7e-19 68.2 0.0 1.1 1 0 0 1 1 1 1 Integral membrane protein DUF106 Pyr_redox_2 PF07992.9 gi|336252746|ref|YP_004595853.1| - 1.3e-30 106.7 0.0 2.8e-30 105.7 0.0 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|336252746|ref|YP_004595853.1| - 1.3e-26 92.8 0.0 2.1e-26 92.1 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.22 gi|336252746|ref|YP_004595853.1| - 1e-16 61.0 1.4 3.7e-13 49.6 0.0 2.6 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase K_oxygenase PF13434.1 gi|336252746|ref|YP_004595853.1| - 1.1e-06 27.8 0.0 6.2e-05 22.0 0.0 2.6 2 1 1 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) Pyr_redox_3 PF13738.1 gi|336252746|ref|YP_004595853.1| - 1.1e-06 28.8 0.0 8.7e-05 22.6 0.0 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|336252746|ref|YP_004595853.1| - 1.3e-06 27.5 1.0 3.1e-06 26.2 0.1 1.9 2 0 0 2 2 2 1 Glucose inhibited division protein A FAD_binding_2 PF00890.19 gi|336252746|ref|YP_004595853.1| - 0.00029 19.8 4.6 0.45 9.3 0.0 2.4 2 0 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.2 gi|336252746|ref|YP_004595853.1| - 0.002 17.2 1.6 0.0033 16.5 1.1 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase DAO PF01266.19 gi|336252746|ref|YP_004595853.1| - 0.014 14.2 0.9 0.014 14.2 0.6 2.9 2 1 1 3 3 3 0 FAD dependent oxidoreductase 3HCDH_N PF02737.13 gi|336252746|ref|YP_004595853.1| - 0.015 14.9 2.5 1.9 8.0 0.0 3.2 3 0 0 3 3 3 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|336252746|ref|YP_004595853.1| - 0.072 12.4 0.1 0.14 11.5 0.0 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_10 PF13460.1 gi|336252746|ref|YP_004595853.1| - 0.47 10.4 6.4 1.4 8.8 1.1 3.1 3 1 0 3 3 3 0 NADH(P)-binding Aldo_ket_red PF00248.16 gi|336252747|ref|YP_004595854.1| - 2.7e-57 193.7 0.0 3.1e-57 193.5 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family DoxX PF07681.7 gi|336252748|ref|YP_004595855.1| - 2.4e-09 37.4 13.5 2.4e-09 37.4 9.4 2.2 1 1 1 2 2 2 1 DoxX NnrU PF07298.6 gi|336252748|ref|YP_004595855.1| - 0.00051 19.4 4.5 0.00051 19.4 3.2 1.3 1 1 0 1 1 1 1 NnrU protein DoxD PF04173.8 gi|336252748|ref|YP_004595855.1| - 0.0014 18.3 5.1 0.0023 17.6 3.6 1.3 1 0 0 1 1 1 1 TQO small subunit DoxD DUF1145 PF06611.7 gi|336252748|ref|YP_004595855.1| - 1.7 8.2 7.2 1.7 8.3 0.6 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF1145) HTH_20 PF12840.2 gi|336252749|ref|YP_004595856.1| - 2.6e-09 36.7 0.0 4.3e-09 36.0 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|336252749|ref|YP_004595856.1| - 0.00015 21.3 0.0 0.00032 20.3 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|336252749|ref|YP_004595856.1| - 0.0017 17.9 0.0 0.0049 16.4 0.0 1.8 2 0 0 2 2 2 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|336252749|ref|YP_004595856.1| - 0.029 14.0 0.0 0.06 13.0 0.0 1.5 1 0 0 1 1 1 0 MarR family DUF742 PF05331.6 gi|336252749|ref|YP_004595856.1| - 0.049 13.2 0.1 0.075 12.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF742) HTH_24 PF13412.1 gi|336252749|ref|YP_004595856.1| - 0.052 12.9 0.0 0.12 11.7 0.0 1.7 1 1 1 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|336252749|ref|YP_004595856.1| - 0.052 13.1 0.0 0.11 12.2 0.0 1.5 1 0 0 1 1 1 0 HTH domain HTH_7 PF02796.10 gi|336252749|ref|YP_004595856.1| - 0.066 13.0 0.0 0.15 11.9 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase CHAD PF05235.9 gi|336252749|ref|YP_004595856.1| - 0.07 12.7 1.4 3.4 7.2 0.0 2.0 1 1 1 2 2 2 0 CHAD domain HARE-HTH PF05066.8 gi|336252749|ref|YP_004595856.1| - 0.099 13.0 0.0 0.38 11.1 0.0 1.8 2 0 0 2 2 2 0 HB1, ASXL, restriction endonuclease HTH domain Rhodanese PF00581.15 gi|336252750|ref|YP_004595857.1| - 4.1e-43 146.3 0.0 3.2e-21 75.7 0.0 2.1 2 0 0 2 2 2 2 Rhodanese-like domain Rhodanese PF00581.15 gi|336252751|ref|YP_004595858.1| - 2.2e-38 131.0 0.4 8.7e-21 74.3 0.0 2.1 2 0 0 2 2 2 2 Rhodanese-like domain TrmB PF01978.14 gi|336252752|ref|YP_004595859.1| - 0.00049 19.7 0.0 0.00095 18.8 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|336252752|ref|YP_004595859.1| - 0.012 15.4 0.0 0.18 11.5 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain RP-C PF03428.8 gi|336252752|ref|YP_004595859.1| - 0.036 13.5 2.5 0.17 11.3 0.1 2.2 2 0 0 2 2 2 0 Replication protein C N-terminal domain HTH_DeoR PF08220.7 gi|336252752|ref|YP_004595859.1| - 0.052 13.0 0.1 3.2 7.3 0.2 2.4 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain HTH_11 PF08279.7 gi|336252752|ref|YP_004595859.1| - 0.11 12.1 0.1 10 5.8 0.1 2.4 2 0 0 2 2 2 0 HTH domain SdpI PF13630.1 gi|336252754|ref|YP_004595861.1| - 0.27 10.9 1.6 0.37 10.5 1.1 1.3 1 1 0 1 1 1 0 SdpI/YhfL protein family DUF3098 PF11297.3 gi|336252754|ref|YP_004595861.1| - 2 8.1 3.8 13 5.6 2.6 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF3098) Rubrerythrin PF02915.12 gi|336252755|ref|YP_004595862.1| - 0.0012 19.1 2.3 0.0075 16.5 0.4 2.2 2 0 0 2 2 2 1 Rubrerythrin HisKA PF00512.20 gi|336252755|ref|YP_004595862.1| - 0.0061 16.5 1.4 0.2 11.6 0.2 2.8 1 1 1 2 2 2 1 His Kinase A (phospho-acceptor) domain TPR_7 PF13176.1 gi|336252755|ref|YP_004595862.1| - 0.018 14.8 3.7 0.13 12.0 0.3 2.6 2 0 0 2 2 2 0 Tetratricopeptide repeat ImcF-related_N PF14331.1 gi|336252755|ref|YP_004595862.1| - 0.075 11.9 0.7 0.24 10.2 0.1 1.7 1 1 1 2 2 2 0 ImcF-related N-terminal domain Prominin PF05478.6 gi|336252757|ref|YP_004595864.1| - 0.038 11.5 0.1 0.041 11.4 0.1 1.0 1 0 0 1 1 1 0 Prominin HK PF02110.10 gi|336252758|ref|YP_004595865.1| - 9.8e-69 231.2 1.7 1.1e-68 231.0 1.1 1.0 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Carb_kinase PF01256.12 gi|336252758|ref|YP_004595865.1| - 1.9e-06 27.3 0.6 2.5e-06 26.9 0.4 1.1 1 0 0 1 1 1 1 Carbohydrate kinase Phos_pyr_kin PF08543.7 gi|336252758|ref|YP_004595865.1| - 1.6e-05 24.2 0.1 2.7e-05 23.4 0.1 1.3 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase TMP-TENI PF02581.12 gi|336252759|ref|YP_004595866.1| - 7.8e-62 207.5 3.9 9.7e-62 207.2 2.7 1.1 1 0 0 1 1 1 1 Thiamine monophosphate synthase/TENI ThiG PF05690.9 gi|336252759|ref|YP_004595866.1| - 0.00026 20.1 4.4 0.00026 20.1 3.0 1.5 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG NMO PF03060.10 gi|336252759|ref|YP_004595866.1| - 0.0003 20.0 9.4 0.00051 19.2 6.5 1.4 1 1 0 1 1 1 1 Nitronate monooxygenase DHO_dh PF01180.16 gi|336252759|ref|YP_004595866.1| - 0.008 15.1 1.4 0.013 14.4 1.0 1.3 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase DUF561 PF04481.7 gi|336252759|ref|YP_004595866.1| - 0.065 12.1 0.6 0.14 11.0 0.4 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF561) Copper-bind PF00127.15 gi|336252760|ref|YP_004595867.1| - 0.16 12.2 0.0 0.23 11.7 0.0 1.2 1 0 0 1 1 1 0 Copper binding proteins, plastocyanin/azurin family Usp PF00582.21 gi|336252761|ref|YP_004595868.1| - 4.6e-33 114.3 6.0 5.8e-33 114.0 4.1 1.1 1 0 0 1 1 1 1 Universal stress protein family Peptidase_M29 PF02073.10 gi|336252762|ref|YP_004595869.1| - 2.7e-111 372.1 1.1 3.1e-111 371.9 0.8 1.0 1 0 0 1 1 1 1 Thermophilic metalloprotease (M29) Prim-Pol PF09250.6 gi|336252762|ref|YP_004595869.1| - 0.036 14.0 0.0 0.058 13.3 0.0 1.3 1 0 0 1 1 1 0 Bifunctional DNA primase/polymerase, N-terminal SKG6 PF08693.5 gi|336252763|ref|YP_004595870.1| - 0.084 12.2 0.4 0.084 12.2 0.3 1.6 2 0 0 2 2 2 0 Transmembrane alpha-helix domain HTH_10 PF04967.7 gi|336252765|ref|YP_004595872.1| - 6.2e-11 41.7 0.0 1.3e-10 40.6 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain HTH_38 PF13936.1 gi|336252765|ref|YP_004595872.1| - 0.14 11.7 0.0 0.31 10.6 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Methyltransf_31 PF13847.1 gi|336252766|ref|YP_004595873.1| - 1.9e-20 72.9 0.0 2.2e-20 72.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|336252766|ref|YP_004595873.1| - 6.1e-18 65.4 0.0 9.1e-18 64.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|336252766|ref|YP_004595873.1| - 1.5e-16 60.6 0.0 3.6e-16 59.4 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|336252766|ref|YP_004595873.1| - 2.3e-16 60.0 0.0 3.5e-16 59.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|336252766|ref|YP_004595873.1| - 1e-14 54.5 0.0 1.4e-14 54.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|336252766|ref|YP_004595873.1| - 2e-13 50.3 0.0 3.7e-13 49.5 0.0 1.4 2 0 0 2 2 2 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Ubie_methyltran PF01209.13 gi|336252766|ref|YP_004595873.1| - 8.9e-13 47.8 0.0 1.1e-12 47.5 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.1 gi|336252766|ref|YP_004595873.1| - 1.1e-12 48.1 0.0 1.6e-12 47.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|336252766|ref|YP_004595873.1| - 2.9e-11 43.4 0.5 6.8e-11 42.2 0.4 1.6 1 0 0 1 1 1 1 Methyltransferase domain NodS PF05401.6 gi|336252766|ref|YP_004595873.1| - 3.9e-07 29.6 0.0 5.4e-07 29.2 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) MTS PF05175.9 gi|336252766|ref|YP_004595873.1| - 1.1e-06 28.1 0.0 1.8e-06 27.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain GCD14 PF08704.5 gi|336252766|ref|YP_004595873.1| - 2.7e-06 27.0 0.0 3.5e-06 26.7 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit CMAS PF02353.15 gi|336252766|ref|YP_004595873.1| - 9e-06 24.9 0.0 1.2e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase RrnaAD PF00398.15 gi|336252766|ref|YP_004595873.1| - 0.00015 20.8 0.0 0.00021 20.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_4 PF02390.12 gi|336252766|ref|YP_004595873.1| - 0.00059 18.9 0.0 0.00081 18.4 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase FtsJ PF01728.14 gi|336252766|ref|YP_004595873.1| - 0.0027 17.6 0.0 0.0068 16.4 0.0 1.7 1 1 0 1 1 1 1 FtsJ-like methyltransferase PrmA PF06325.8 gi|336252766|ref|YP_004595873.1| - 0.0048 16.0 0.0 0.0067 15.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Fibrillarin PF01269.12 gi|336252766|ref|YP_004595873.1| - 0.0072 15.2 0.0 0.011 14.7 0.0 1.2 1 0 0 1 1 1 1 Fibrillarin TehB PF03848.9 gi|336252766|ref|YP_004595873.1| - 0.0077 15.4 0.0 0.017 14.2 0.0 1.5 2 0 0 2 2 2 1 Tellurite resistance protein TehB Methyltransf_3 PF01596.12 gi|336252766|ref|YP_004595873.1| - 0.01 14.8 0.0 0.015 14.3 0.0 1.1 1 0 0 1 1 1 0 O-methyltransferase MetW PF07021.7 gi|336252766|ref|YP_004595873.1| - 0.059 12.7 0.0 0.079 12.3 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW UPF0020 PF01170.13 gi|336252766|ref|YP_004595873.1| - 0.13 11.7 0.0 0.16 11.5 0.0 1.2 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 Methyltransf_32 PF13679.1 gi|336252766|ref|YP_004595873.1| - 0.17 11.5 0.0 0.24 11.0 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Beta_elim_lyase PF01212.16 gi|336252767|ref|YP_004595874.1| - 3.5e-82 275.8 0.5 4e-82 275.6 0.4 1.0 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|336252767|ref|YP_004595874.1| - 5e-07 29.0 0.1 0.0006 18.9 0.0 2.6 3 0 0 3 3 3 2 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|336252767|ref|YP_004595874.1| - 0.1 10.8 0.8 0.1 10.8 0.0 1.4 2 0 0 2 2 2 0 Cys/Met metabolism PLP-dependent enzyme P12 PF12669.2 gi|336252768|ref|YP_004595875.1| - 0.2 11.8 1.0 0.22 11.7 0.7 1.1 1 0 0 1 1 1 0 Virus attachment protein p12 family HAMP PF00672.20 gi|336252768|ref|YP_004595875.1| - 0.27 11.4 2.9 0.3 11.2 2.0 1.1 1 0 0 1 1 1 0 HAMP domain Metallophos_2 PF12850.2 gi|336252769|ref|YP_004595876.1| - 1.7e-22 79.9 0.6 2.3e-22 79.4 0.4 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|336252769|ref|YP_004595876.1| - 5.6e-09 35.6 0.1 1.1e-06 28.1 0.1 2.3 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase NIF3 PF01784.13 gi|336252769|ref|YP_004595876.1| - 0.071 12.6 0.0 7.8 5.9 0.0 2.1 2 0 0 2 2 2 0 NIF3 (NGG1p interacting factor 3) Cation_efflux PF01545.16 gi|336252770|ref|YP_004595877.1| - 2.3e-44 151.6 0.1 2.8e-44 151.3 0.1 1.0 1 0 0 1 1 1 1 Cation efflux family Paramyxo_P PF01806.12 gi|336252770|ref|YP_004595877.1| - 0.1 11.8 0.1 0.15 11.2 0.0 1.2 1 0 0 1 1 1 0 Paramyxovirinae P phosphoprotein C-terminal region VIT1 PF01988.14 gi|336252770|ref|YP_004595877.1| - 8.6 5.7 11.3 0.2 11.0 2.4 2.2 3 0 0 3 3 3 0 VIT family Helicase_C_2 PF13307.1 gi|336252772|ref|YP_004595879.1| - 2.2e-29 102.5 0.0 6.8e-29 100.9 0.0 1.8 2 0 0 2 2 2 1 Helicase C-terminal domain DEAD_2 PF06733.10 gi|336252772|ref|YP_004595879.1| - 3.8e-23 81.7 0.4 1.2e-22 80.1 0.2 1.8 1 1 0 1 1 1 1 DEAD_2 DEAD PF00270.24 gi|336252772|ref|YP_004595879.1| - 3.1e-08 33.2 0.1 8.6e-05 22.0 0.0 3.3 3 0 0 3 3 3 2 DEAD/DEAH box helicase ResIII PF04851.10 gi|336252772|ref|YP_004595879.1| - 1.5e-06 28.1 1.1 4e-05 23.5 0.8 2.4 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit KaiC PF06745.8 gi|336252772|ref|YP_004595879.1| - 0.00045 19.4 0.0 0.00091 18.4 0.0 1.5 1 0 0 1 1 1 1 KaiC PhoH PF02562.11 gi|336252772|ref|YP_004595879.1| - 0.0067 15.6 0.1 0.02 14.1 0.0 1.7 2 0 0 2 2 2 1 PhoH-like protein AAA_34 PF13872.1 gi|336252772|ref|YP_004595879.1| - 0.0099 14.6 0.5 0.016 13.9 0.0 1.5 2 0 0 2 2 2 1 P-loop containing NTP hydrolase pore-1 DUF815 PF05673.8 gi|336252772|ref|YP_004595879.1| - 0.016 14.1 0.0 0.031 13.2 0.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF815) DUF2075 PF09848.4 gi|336252772|ref|YP_004595879.1| - 0.027 13.4 0.3 0.77 8.6 0.0 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_19 PF13245.1 gi|336252772|ref|YP_004595879.1| - 0.095 12.4 0.9 0.19 11.4 0.1 2.0 2 0 0 2 2 1 0 Part of AAA domain ArsA_ATPase PF02374.10 gi|336252772|ref|YP_004595879.1| - 0.12 11.4 0.2 0.39 9.7 0.1 1.8 1 1 0 1 1 1 0 Anion-transporting ATPase AAA_25 PF13481.1 gi|336252772|ref|YP_004595879.1| - 0.19 11.0 7.0 0.87 8.9 0.6 3.9 4 1 0 4 4 4 0 AAA domain AAA_16 PF13191.1 gi|336252772|ref|YP_004595879.1| - 0.26 11.2 4.3 2.9 7.8 3.0 2.7 1 1 0 1 1 1 0 AAA ATPase domain TPR_MLP1_2 PF07926.7 gi|336252772|ref|YP_004595879.1| - 0.86 9.3 7.4 1.5 8.6 1.2 2.5 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein Rhodanese PF00581.15 gi|336252774|ref|YP_004595881.1| - 6.5e-15 55.4 0.0 7.2e-15 55.3 0.0 1.0 1 0 0 1 1 1 1 Rhodanese-like domain DUF4193 PF13834.1 gi|336252774|ref|YP_004595881.1| - 0.12 12.5 0.1 0.16 12.1 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4193) TusA PF01206.12 gi|336252775|ref|YP_004595882.1| - 2.6e-12 46.1 0.0 3.7e-12 45.6 0.0 1.2 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF3680 PF12441.3 gi|336252775|ref|YP_004595882.1| - 0.2 11.5 0.9 1.2 9.0 0.5 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3680) Sulf_transp PF04143.9 gi|336252776|ref|YP_004595883.1| - 2.8e-18 65.6 22.5 1.4e-10 41.0 7.4 3.8 4 0 0 4 4 4 2 Sulphur transport 2_5_RNA_ligase2 PF13563.1 gi|336252777|ref|YP_004595884.1| - 1.3e-16 60.6 0.1 1.7e-16 60.3 0.0 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily LigT_PEase PF02834.11 gi|336252777|ref|YP_004595884.1| - 1e-07 31.8 0.0 0.00012 21.9 0.0 2.4 3 0 0 3 3 3 2 LigT like Phosphoesterase AKAP7_NLS PF10469.4 gi|336252777|ref|YP_004595884.1| - 5.8e-05 22.8 0.0 7.1e-05 22.6 0.0 1.1 1 0 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain DUF2244 PF10003.4 gi|336252778|ref|YP_004595885.1| - 0.032 13.5 2.6 0.034 13.5 1.8 1.1 1 0 0 1 1 1 0 Integral membrane protein (DUF2244) PetG PF02529.10 gi|336252778|ref|YP_004595885.1| - 5.5 6.5 8.2 18 4.9 0.1 2.5 2 0 0 2 2 2 0 Cytochrome B6-F complex subunit 5 Arginosuc_synth PF00764.14 gi|336252780|ref|YP_004595887.1| - 3.7e-142 473.9 0.0 4.4e-142 473.7 0.0 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase Asn_synthase PF00733.16 gi|336252780|ref|YP_004595887.1| - 1.2e-05 24.9 0.2 0.00018 21.0 0.0 2.1 2 0 0 2 2 2 1 Asparagine synthase QueC PF06508.8 gi|336252780|ref|YP_004595887.1| - 6.4e-05 22.3 0.0 0.00012 21.4 0.0 1.4 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.11 gi|336252780|ref|YP_004595887.1| - 0.0018 16.9 0.0 0.0029 16.2 0.0 1.4 1 0 0 1 1 1 1 tRNA methyl transferase NAD_synthase PF02540.12 gi|336252780|ref|YP_004595887.1| - 0.0051 15.7 0.0 0.0083 15.0 0.0 1.3 1 0 0 1 1 1 1 NAD synthase SMC_hinge PF06470.8 gi|336252780|ref|YP_004595887.1| - 0.07 13.1 0.2 1.3 8.9 0.1 2.7 3 0 0 3 3 3 0 SMC proteins Flexible Hinge Domain Lyase_1 PF00206.15 gi|336252781|ref|YP_004595888.1| - 1.4e-58 198.5 0.2 3.5e-58 197.2 0.0 1.7 2 0 0 2 2 2 1 Lyase ASL_C2 PF14698.1 gi|336252781|ref|YP_004595888.1| - 1.2e-12 47.6 0.3 5.8e-12 45.5 0.2 2.3 1 0 0 1 1 1 1 Argininosuccinate lyase C-terminal zinc_ribbon_2 PF13240.1 gi|336252782|ref|YP_004595889.1| - 0.00058 19.2 0.3 0.46 10.0 0.0 2.2 2 0 0 2 2 2 2 zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|336252782|ref|YP_004595889.1| - 0.00098 18.5 1.8 0.0034 16.8 1.2 1.8 1 1 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit zf-ribbon_3 PF13248.1 gi|336252782|ref|YP_004595889.1| - 0.016 14.4 0.2 4.4 6.6 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|336252782|ref|YP_004595889.1| - 0.019 14.7 0.4 0.05 13.4 0.3 1.7 1 1 0 1 1 1 0 Double zinc ribbon Zn-ribbon_8 PF09723.5 gi|336252782|ref|YP_004595889.1| - 0.026 14.4 1.2 0.05 13.5 0.8 1.5 1 1 0 1 1 1 0 Zinc ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|336252782|ref|YP_004595889.1| - 0.033 13.9 1.4 0.12 12.1 1.0 1.8 1 1 1 2 2 2 0 PhnA Zinc-Ribbon zf-HYPF PF07503.7 gi|336252782|ref|YP_004595889.1| - 0.033 13.5 0.0 6 6.3 0.0 2.1 2 0 0 2 2 2 0 HypF finger YhfH PF14149.1 gi|336252782|ref|YP_004595889.1| - 0.046 13.5 1.9 3.1 7.6 0.1 2.2 2 0 0 2 2 2 0 YhfH-like protein HypA PF01155.14 gi|336252782|ref|YP_004595889.1| - 0.05 13.2 0.4 0.055 13.1 0.3 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Nudix_N_2 PF14803.1 gi|336252782|ref|YP_004595889.1| - 0.05 13.2 1.5 6.7 6.4 0.1 2.3 2 1 0 2 2 2 0 Nudix N-terminal Prok-RING_1 PF14446.1 gi|336252782|ref|YP_004595889.1| - 0.052 13.2 4.8 0.11 12.2 3.3 1.5 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 TF_Zn_Ribbon PF08271.7 gi|336252782|ref|YP_004595889.1| - 0.055 12.7 3.2 0.076 12.3 2.2 1.3 1 0 0 1 1 1 0 TFIIB zinc-binding Desulfoferrod_N PF06397.7 gi|336252782|ref|YP_004595889.1| - 0.088 12.2 2.3 0.74 9.2 0.2 2.1 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain DUF2387 PF09526.5 gi|336252782|ref|YP_004595889.1| - 0.096 12.6 3.7 2.7 7.9 0.3 2.1 1 1 1 2 2 2 0 Probable metal-binding protein (DUF2387) zinc_ribbon_5 PF13719.1 gi|336252782|ref|YP_004595889.1| - 0.12 11.9 0.3 0.41 10.2 0.2 1.7 1 1 1 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|336252782|ref|YP_004595889.1| - 0.14 11.8 0.4 0.19 11.4 0.3 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain RNA_POL_M_15KD PF02150.11 gi|336252782|ref|YP_004595889.1| - 0.21 11.3 1.6 1.4 8.6 1.1 2.0 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit Lar_restr_allev PF14354.1 gi|336252782|ref|YP_004595889.1| - 0.22 11.8 3.1 0.95 9.8 0.6 2.0 1 1 1 2 2 2 0 Restriction alleviation protein Lar DUF1610 PF07754.6 gi|336252782|ref|YP_004595889.1| - 1.6 8.9 4.8 1.6 8.9 0.4 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) RimK PF08443.6 gi|336252783|ref|YP_004595890.1| - 3.2e-44 150.6 0.0 4.6e-44 150.1 0.0 1.2 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_4 PF13535.1 gi|336252783|ref|YP_004595890.1| - 1.5e-20 73.7 0.2 2.6e-20 72.9 0.1 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|336252783|ref|YP_004595890.1| - 1.6e-12 46.8 0.0 2.4e-12 46.2 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.9 gi|336252783|ref|YP_004595890.1| - 1.7e-11 44.2 0.0 2.4e-11 43.7 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain GSH-S_ATP PF02955.11 gi|336252783|ref|YP_004595890.1| - 3.1e-09 36.2 0.0 4.3e-09 35.7 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp PF02222.17 gi|336252783|ref|YP_004595890.1| - 4.9e-07 29.2 0.3 9.7e-06 25.0 0.0 2.6 2 1 0 2 2 2 1 ATP-grasp domain ATP-grasp_5 PF13549.1 gi|336252783|ref|YP_004595890.1| - 4.7e-06 25.9 0.2 9.3e-05 21.7 0.0 2.7 1 1 2 3 3 3 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|336252783|ref|YP_004595890.1| - 6.5e-06 25.5 0.0 1.3e-05 24.6 0.0 1.7 1 1 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Dala_Dala_lig_C PF07478.8 gi|336252783|ref|YP_004595890.1| - 0.016 14.5 0.0 0.14 11.5 0.0 2.1 1 1 0 1 1 1 0 D-ala D-ala ligase C-terminus DUF287 PF03384.9 gi|336252783|ref|YP_004595890.1| - 0.38 10.9 2.3 0.71 10.0 0.2 2.5 3 0 0 3 3 3 0 Drosophila protein of unknown function, DUF287 Semialdhyde_dh PF01118.19 gi|336252784|ref|YP_004595891.1| - 3.5e-27 95.1 0.0 7.7e-27 94.0 0.0 1.6 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.13 gi|336252784|ref|YP_004595891.1| - 4.3e-08 33.2 0.0 7.3e-08 32.4 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain DapB_N PF01113.15 gi|336252784|ref|YP_004595891.1| - 0.092 12.6 0.4 0.29 11.0 0.3 1.8 1 1 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus AA_kinase PF00696.23 gi|336252785|ref|YP_004595892.1| - 6.1e-29 101.2 4.1 7.3e-29 101.0 2.8 1.1 1 0 0 1 1 1 1 Amino acid kinase family GCV_H PF01597.14 gi|336252785|ref|YP_004595892.1| - 0.15 11.7 1.4 0.35 10.5 0.1 2.1 2 0 0 2 2 2 0 Glycine cleavage H-protein Aminotran_3 PF00202.16 gi|336252786|ref|YP_004595893.1| - 2.6e-94 315.8 0.0 3.2e-94 315.5 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.16 gi|336252786|ref|YP_004595893.1| - 0.0021 17.0 0.0 0.0029 16.6 0.0 1.3 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|336252786|ref|YP_004595893.1| - 0.013 14.6 0.0 0.021 13.9 0.0 1.3 1 0 0 1 1 1 0 Beta-eliminating lyase Peptidase_M20 PF01546.23 gi|336252787|ref|YP_004595894.1| - 3.3e-26 91.9 0.3 4.6e-26 91.4 0.2 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|336252787|ref|YP_004595894.1| - 6e-06 25.9 0.0 1.2e-05 24.9 0.0 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.12 gi|336252787|ref|YP_004595894.1| - 0.037 13.7 0.2 0.34 10.6 0.1 2.3 1 1 0 1 1 1 0 Peptidase family M28 OTCace_N PF02729.16 gi|336252788|ref|YP_004595895.1| - 6.7e-51 171.6 0.0 1.1e-50 171.0 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.19 gi|336252788|ref|YP_004595895.1| - 5.1e-50 169.4 0.0 9.1e-50 168.6 0.0 1.4 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DUF3628 PF12300.3 gi|336252788|ref|YP_004595895.1| - 0.064 13.2 0.0 0.12 12.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3628) PALP PF00291.20 gi|336252789|ref|YP_004595896.1| - 5.8e-64 216.2 3.4 6.7e-64 216.0 2.3 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme C1_2 PF03107.11 gi|336252789|ref|YP_004595896.1| - 0.076 13.1 1.6 0.13 12.4 1.1 1.3 1 0 0 1 1 1 0 C1 domain Pil1 PF13805.1 gi|336252790|ref|YP_004595897.1| - 0.0042 16.2 2.0 0.0054 15.9 1.4 1.1 1 0 0 1 1 1 1 Eisosome component PIL1 CENP-F_leu_zip PF10473.4 gi|336252790|ref|YP_004595897.1| - 0.0058 16.4 1.1 0.0087 15.9 0.8 1.2 1 0 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 PA26 PF04636.8 gi|336252790|ref|YP_004595897.1| - 0.033 12.8 1.3 0.036 12.7 0.9 1.0 1 0 0 1 1 1 0 PA26 p53-induced protein (sestrin) DUF4407 PF14362.1 gi|336252790|ref|YP_004595897.1| - 0.052 12.5 5.6 0.065 12.1 3.9 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) GATase PF00117.23 gi|336252791|ref|YP_004595898.1| - 2.2e-23 82.6 0.0 3e-23 82.2 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|336252791|ref|YP_004595898.1| - 4.6e-07 29.5 0.0 3.8e-06 26.4 0.0 2.2 1 1 0 1 1 1 1 Peptidase C26 HTS PF04204.11 gi|336252791|ref|YP_004595898.1| - 0.00071 18.3 0.0 0.0068 15.1 0.0 2.3 1 1 0 1 1 1 1 Homoserine O-succinyltransferase GATase_3 PF07685.9 gi|336252791|ref|YP_004595898.1| - 0.036 13.6 0.0 0.089 12.3 0.0 1.8 1 1 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain AMP-binding PF00501.23 gi|336252792|ref|YP_004595899.1| - 1.6e-39 135.5 0.2 2.8e-39 134.6 0.1 1.4 1 1 0 1 1 1 1 AMP-binding enzyme FeoA PF04023.9 gi|336252792|ref|YP_004595899.1| - 0.028 14.3 0.0 0.31 11.0 0.0 2.4 2 0 0 2 2 2 0 FeoA domain Abhydrolase_6 PF12697.2 gi|336252793|ref|YP_004595900.1| - 1.2e-32 113.6 9.0 1.4e-32 113.4 6.3 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|336252793|ref|YP_004595900.1| - 1.4e-17 64.0 0.0 7.9e-16 58.3 0.0 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|336252793|ref|YP_004595900.1| - 1.7e-16 60.2 0.1 5.2e-16 58.7 0.1 1.7 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_4 PF08386.5 gi|336252793|ref|YP_004595900.1| - 0.00028 20.7 0.0 0.00052 19.8 0.0 1.4 1 0 0 1 1 1 1 TAP-like protein tRNA-synt_2c PF01411.14 gi|336252794|ref|YP_004595901.1| - 3.1e-114 382.2 0.0 3.8e-114 381.9 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.9 gi|336252794|ref|YP_004595901.1| - 2.2e-12 46.6 1.1 2.2e-12 46.6 0.8 1.8 2 0 0 2 2 2 1 Threonyl and Alanyl tRNA synthetase second additional domain DHHA1 PF02272.14 gi|336252794|ref|YP_004595901.1| - 1.1e-08 34.6 5.2 4e-08 32.8 3.6 1.9 1 0 0 1 1 1 1 DHHA1 domain GAF_2 PF13185.1 gi|336252795|ref|YP_004595902.1| - 3.2e-10 40.6 6.1 1.5e-09 38.4 0.2 3.9 2 1 2 4 4 4 1 GAF domain GAF PF01590.21 gi|336252795|ref|YP_004595902.1| - 1.9e-06 28.1 2.6 7.3e-06 26.1 0.2 3.1 3 0 0 3 3 3 1 GAF domain PAS_4 PF08448.5 gi|336252795|ref|YP_004595902.1| - 0.00055 19.9 0.9 0.00055 19.9 0.7 3.3 3 1 0 3 3 3 1 PAS fold GAF_3 PF13492.1 gi|336252795|ref|YP_004595902.1| - 0.00073 19.6 3.5 0.0012 18.9 0.1 3.1 4 0 0 4 4 4 1 GAF domain TMF_TATA_bd PF12325.3 gi|336252795|ref|YP_004595902.1| - 0.018 14.7 3.3 0.041 13.6 0.5 2.3 2 0 0 2 2 2 0 TATA element modulatory factor 1 TATA binding PAS_9 PF13426.1 gi|336252795|ref|YP_004595902.1| - 0.019 15.3 0.1 0.085 13.2 0.0 2.1 2 0 0 2 2 2 0 PAS domain DUF904 PF06005.7 gi|336252795|ref|YP_004595902.1| - 0.074 13.3 0.6 0.22 11.8 0.4 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF904) Rep_fac_C PF08542.6 gi|336252796|ref|YP_004595903.1| - 2.8e-21 75.2 0.0 6.5e-21 74.1 0.0 1.7 1 0 0 1 1 1 1 Replication factor C C-terminal domain AAA PF00004.24 gi|336252796|ref|YP_004595903.1| - 6.5e-20 71.6 0.1 1.2e-17 64.3 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.1 gi|336252796|ref|YP_004595903.1| - 2.6e-16 59.6 0.0 3.8e-14 52.6 0.0 2.1 1 1 0 1 1 1 1 DNA polymerase III, delta subunit Rad17 PF03215.10 gi|336252796|ref|YP_004595903.1| - 2.7e-09 36.2 0.0 5.3e-06 25.4 0.0 2.2 2 0 0 2 2 2 2 Rad17 cell cycle checkpoint protein AAA_14 PF13173.1 gi|336252796|ref|YP_004595903.1| - 6.6e-08 32.5 0.1 2.7e-07 30.5 0.0 1.9 1 1 1 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|336252796|ref|YP_004595903.1| - 8.9e-08 32.3 0.0 0.011 15.9 0.0 2.4 1 1 1 2 2 2 2 AAA domain RuvB_N PF05496.7 gi|336252796|ref|YP_004595903.1| - 7.4e-07 28.4 0.1 6.6e-06 25.3 0.0 2.4 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|336252796|ref|YP_004595903.1| - 9.9e-07 28.9 1.0 0.012 15.6 0.0 3.1 2 1 1 3 3 3 2 AAA ATPase domain AAA_17 PF13207.1 gi|336252796|ref|YP_004595903.1| - 0.00016 22.4 1.8 0.00029 21.6 0.1 2.3 3 1 0 3 3 1 1 AAA domain DNA_pol3_delta PF06144.8 gi|336252796|ref|YP_004595903.1| - 0.00019 21.0 0.0 0.00039 19.9 0.0 1.5 1 0 0 1 1 1 1 DNA polymerase III, delta subunit AAA_19 PF13245.1 gi|336252796|ref|YP_004595903.1| - 0.00026 20.6 0.0 0.00086 19.0 0.0 2.0 1 0 0 1 1 1 1 Part of AAA domain Sigma54_activat PF00158.21 gi|336252796|ref|YP_004595903.1| - 0.00032 20.1 0.0 0.022 14.2 0.0 2.5 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_3 PF07726.6 gi|336252796|ref|YP_004595903.1| - 0.00046 19.8 0.0 0.0021 17.6 0.0 1.9 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|336252796|ref|YP_004595903.1| - 0.00046 19.9 0.0 0.0084 15.8 0.0 2.8 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_18 PF13238.1 gi|336252796|ref|YP_004595903.1| - 0.00053 20.3 0.0 0.0017 18.6 0.0 1.9 2 1 0 2 2 1 1 AAA domain Mg_chelatase PF01078.16 gi|336252796|ref|YP_004595903.1| - 0.00082 18.5 0.0 0.14 11.3 0.0 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI IstB_IS21 PF01695.12 gi|336252796|ref|YP_004595903.1| - 0.00098 18.5 0.0 0.0035 16.7 0.0 2.0 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_25 PF13481.1 gi|336252796|ref|YP_004595903.1| - 0.0014 18.0 0.4 0.0057 16.0 0.0 2.2 1 1 1 2 2 2 1 AAA domain TIP49 PF06068.8 gi|336252796|ref|YP_004595903.1| - 0.0037 16.0 0.0 0.063 11.9 0.0 2.4 2 1 0 2 2 2 1 TIP49 C-terminus Sigma54_activ_2 PF14532.1 gi|336252796|ref|YP_004595903.1| - 0.0037 17.2 0.0 0.0093 16.0 0.0 1.6 1 1 0 1 1 1 1 Sigma-54 interaction domain PhoH PF02562.11 gi|336252796|ref|YP_004595903.1| - 0.0037 16.5 0.0 0.19 10.9 0.0 2.3 2 0 0 2 2 2 1 PhoH-like protein Viral_helicase1 PF01443.13 gi|336252796|ref|YP_004595903.1| - 0.0055 16.2 0.0 0.01 15.3 0.0 1.4 1 0 0 1 1 1 1 Viral (Superfamily 1) RNA helicase FtsK_SpoIIIE PF01580.13 gi|336252796|ref|YP_004595903.1| - 0.0074 15.7 0.0 0.036 13.5 0.0 1.9 2 0 0 2 2 2 1 FtsK/SpoIIIE family AAA_10 PF12846.2 gi|336252796|ref|YP_004595903.1| - 0.0091 15.4 0.4 2.9 7.2 0.0 2.5 1 1 1 2 2 2 1 AAA-like domain MobB PF03205.9 gi|336252796|ref|YP_004595903.1| - 0.01 15.5 0.0 0.034 13.8 0.0 1.9 2 0 0 2 2 1 0 Molybdopterin guanine dinucleotide synthesis protein B RNA_helicase PF00910.17 gi|336252796|ref|YP_004595903.1| - 0.013 15.6 0.0 0.031 14.4 0.0 1.7 1 1 0 1 1 1 0 RNA helicase AAA_30 PF13604.1 gi|336252796|ref|YP_004595903.1| - 0.021 14.4 1.6 0.035 13.6 0.1 2.1 2 1 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|336252796|ref|YP_004595903.1| - 0.022 14.4 0.0 0.089 12.4 0.0 2.0 3 0 0 3 3 2 0 NACHT domain DEAD PF00270.24 gi|336252796|ref|YP_004595903.1| - 0.022 14.2 0.4 6.8 6.1 0.0 2.7 2 1 0 3 3 3 0 DEAD/DEAH box helicase AAA_33 PF13671.1 gi|336252796|ref|YP_004595903.1| - 0.024 14.4 0.1 0.099 12.5 0.0 2.0 2 1 0 2 2 2 0 AAA domain AAA_2 PF07724.9 gi|336252796|ref|YP_004595903.1| - 0.028 14.3 0.0 0.085 12.7 0.0 1.9 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) ResIII PF04851.10 gi|336252796|ref|YP_004595903.1| - 0.029 14.2 0.0 0.085 12.6 0.0 1.6 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit T2SE PF00437.15 gi|336252796|ref|YP_004595903.1| - 0.035 13.0 0.0 0.071 11.9 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein NB-ARC PF00931.17 gi|336252796|ref|YP_004595903.1| - 0.062 12.1 0.0 0.11 11.3 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain AAA_11 PF13086.1 gi|336252796|ref|YP_004595903.1| - 0.062 12.8 0.0 0.079 12.5 0.0 1.2 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|336252796|ref|YP_004595903.1| - 0.088 11.8 0.0 0.2 10.7 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin SNF2_N PF00176.18 gi|336252796|ref|YP_004595903.1| - 0.089 11.5 0.0 0.24 10.1 0.0 1.6 2 0 0 2 2 2 0 SNF2 family N-terminal domain DUF2075 PF09848.4 gi|336252796|ref|YP_004595903.1| - 0.11 11.4 0.0 0.22 10.4 0.0 1.6 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_28 PF13521.1 gi|336252796|ref|YP_004595903.1| - 0.11 12.4 1.2 0.57 10.1 0.1 2.5 2 1 0 2 2 2 0 AAA domain Torsin PF06309.6 gi|336252796|ref|YP_004595903.1| - 0.15 11.9 0.0 0.28 11.0 0.0 1.4 1 0 0 1 1 1 0 Torsin TPR_14 PF13428.1 gi|336252796|ref|YP_004595903.1| - 0.18 12.5 2.7 21 6.1 0.1 3.6 3 0 0 3 3 2 0 Tetratricopeptide repeat TPR_6 PF13174.1 gi|336252796|ref|YP_004595903.1| - 4.9 7.8 5.5 76 4.0 0.0 3.6 4 0 0 4 4 2 0 Tetratricopeptide repeat Bactofilin PF04519.8 gi|336252797|ref|YP_004595904.1| - 6.9e-08 32.4 20.3 3.6e-06 26.9 7.9 3.1 1 1 2 3 3 3 2 Polymer-forming cytoskeletal DUF342 PF03961.8 gi|336252797|ref|YP_004595904.1| - 0.0076 14.7 9.7 0.011 14.1 6.7 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF342) DUF3672 PF12421.3 gi|336252797|ref|YP_004595904.1| - 0.77 9.8 7.5 17 5.5 2.5 2.7 1 1 1 2 2 2 0 Fibronectin type III protein Ribonuc_L-PSP PF01042.16 gi|336252799|ref|YP_004595906.1| - 8.1e-40 135.3 0.2 9e-40 135.2 0.1 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP YjgF_endoribonc PF14588.1 gi|336252799|ref|YP_004595906.1| - 0.0079 16.1 0.0 0.0098 15.8 0.0 1.2 1 0 0 1 1 1 1 YjgF/chorismate_mutase-like, putative endoribonuclease SHMT PF00464.14 gi|336252800|ref|YP_004595907.1| - 3.1e-155 516.4 0.0 3.7e-155 516.2 0.0 1.0 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_1_2 PF00155.16 gi|336252800|ref|YP_004595907.1| - 4.7e-09 35.6 0.0 7.3e-09 35.0 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|336252800|ref|YP_004595907.1| - 2.3e-05 23.6 0.0 0.00014 21.0 0.0 2.0 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.14 gi|336252800|ref|YP_004595907.1| - 0.0029 16.4 0.0 0.0041 15.8 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V BCCT PF02028.12 gi|336252801|ref|YP_004595908.1| - 2.2e-154 514.3 48.3 2.6e-154 514.0 33.5 1.0 1 0 0 1 1 1 1 BCCT family transporter PALP PF00291.20 gi|336252802|ref|YP_004595909.1| - 1.1e-81 274.3 6.8 1.5e-81 273.9 4.7 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACT PF01842.20 gi|336252802|ref|YP_004595909.1| - 4e-05 22.9 3.7 5.1e-05 22.6 0.1 2.8 3 0 0 3 3 3 1 ACT domain ACT_4 PF13291.1 gi|336252802|ref|YP_004595909.1| - 0.0044 17.3 0.0 0.017 15.4 0.0 2.1 2 0 0 2 2 2 1 ACT domain DegT_DnrJ_EryC1 PF01041.12 gi|336252802|ref|YP_004595909.1| - 0.011 14.7 1.1 0.032 13.2 0.2 1.9 2 0 0 2 2 2 0 DegT/DnrJ/EryC1/StrS aminotransferase family DAGK_cat PF00781.19 gi|336252802|ref|YP_004595909.1| - 0.063 12.7 0.6 0.31 10.4 0.2 2.2 2 0 0 2 2 2 0 Diacylglycerol kinase catalytic domain DAO PF01266.19 gi|336252803|ref|YP_004595910.1| - 7.3e-69 232.3 0.4 1.4e-68 231.4 0.3 1.5 1 0 0 1 1 1 1 FAD dependent oxidoreductase GCV_T PF01571.16 gi|336252803|ref|YP_004595910.1| - 3e-59 199.9 0.1 6.1e-59 198.9 0.0 1.5 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.6 gi|336252803|ref|YP_004595910.1| - 1.9e-18 66.2 0.0 4.2e-18 65.1 0.0 1.6 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain FAD_binding_2 PF00890.19 gi|336252803|ref|YP_004595910.1| - 6.8e-08 31.7 2.1 0.0003 19.7 0.2 2.6 3 0 0 3 3 3 2 FAD binding domain Pyr_redox_3 PF13738.1 gi|336252803|ref|YP_004595910.1| - 9.1e-08 32.3 0.1 0.0019 18.3 0.0 3.7 3 1 1 4 4 4 1 Pyridine nucleotide-disulphide oxidoreductase SoxG PF04268.7 gi|336252803|ref|YP_004595910.1| - 1.1e-07 31.8 0.0 8e-07 29.0 0.0 2.1 1 1 1 2 2 2 1 Sarcosine oxidase, gamma subunit family NAD_binding_8 PF13450.1 gi|336252803|ref|YP_004595910.1| - 1.1e-06 28.5 1.0 4.4e-06 26.6 0.1 2.6 3 0 0 3 3 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.22 gi|336252803|ref|YP_004595910.1| - 0.00043 20.6 1.9 0.028 14.8 0.3 2.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|336252803|ref|YP_004595910.1| - 0.0017 18.2 1.1 0.074 12.9 0.8 2.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase ThiF PF00899.16 gi|336252803|ref|YP_004595910.1| - 0.0023 17.7 0.4 0.004 16.9 0.3 1.4 1 0 0 1 1 1 1 ThiF family NAD_binding_9 PF13454.1 gi|336252803|ref|YP_004595910.1| - 0.0023 17.7 2.7 1.3 8.7 0.1 3.1 3 0 0 3 3 3 2 FAD-NAD(P)-binding FAD_oxidored PF12831.2 gi|336252803|ref|YP_004595910.1| - 0.0054 15.8 1.8 0.0087 15.1 0.3 2.0 2 1 0 2 2 2 1 FAD dependent oxidoreductase Thi4 PF01946.12 gi|336252803|ref|YP_004595910.1| - 0.021 13.9 0.2 0.98 8.4 0.1 2.2 2 0 0 2 2 2 0 Thi4 family ApbA PF02558.11 gi|336252803|ref|YP_004595910.1| - 0.048 13.0 0.1 0.089 12.2 0.1 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA HI0933_like PF03486.9 gi|336252803|ref|YP_004595910.1| - 0.072 11.5 0.2 2.8 6.3 0.0 2.1 2 0 0 2 2 2 0 HI0933-like protein GIDA PF01134.17 gi|336252803|ref|YP_004595910.1| - 0.081 11.7 1.4 0.32 9.7 0.2 2.1 2 0 0 2 2 2 0 Glucose inhibited division protein A Shikimate_DH PF01488.15 gi|336252803|ref|YP_004595910.1| - 0.097 12.7 0.0 0.2 11.7 0.0 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase FAD_binding_3 PF01494.14 gi|336252803|ref|YP_004595910.1| - 0.25 10.3 2.9 1.2 8.1 0.2 2.2 2 0 0 2 2 2 0 FAD binding domain EamA PF00892.15 gi|336252804|ref|YP_004595911.1| - 1.8e-13 50.6 14.2 2.2e-13 50.3 9.9 1.1 1 0 0 1 1 1 1 EamA-like transporter family TPT PF03151.11 gi|336252804|ref|YP_004595911.1| - 0.07 12.7 12.9 0.13 11.9 8.9 1.6 1 1 0 1 1 1 0 Triose-phosphate Transporter family Mg_trans_NIPA PF05653.9 gi|336252804|ref|YP_004595911.1| - 0.23 10.3 6.5 0.28 10.1 4.2 1.3 1 1 0 1 1 1 0 Magnesium transporter NIPA EmrE PF13536.1 gi|336252804|ref|YP_004595911.1| - 0.37 11.0 17.8 0.059 13.5 9.4 1.7 2 0 0 2 2 2 0 Multidrug resistance efflux transporter DAO PF01266.19 gi|336252805|ref|YP_004595912.1| - 1.1e-63 215.3 0.0 1.2e-63 215.2 0.0 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|336252805|ref|YP_004595912.1| - 2.2e-05 24.4 0.1 0.0013 18.6 0.1 2.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|336252805|ref|YP_004595912.1| - 0.00025 21.1 0.1 0.001 19.1 0.1 1.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|336252805|ref|YP_004595912.1| - 0.00084 17.9 0.1 0.017 13.5 0.0 2.1 2 0 0 2 2 2 1 HI0933-like protein Amino_oxidase PF01593.19 gi|336252805|ref|YP_004595912.1| - 0.002 17.2 0.0 0.0036 16.4 0.0 1.3 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase ApbA PF02558.11 gi|336252805|ref|YP_004595912.1| - 0.012 15.0 0.2 0.02 14.3 0.2 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA FAD_binding_3 PF01494.14 gi|336252805|ref|YP_004595912.1| - 0.017 14.2 0.4 0.027 13.5 0.3 1.3 1 0 0 1 1 1 0 FAD binding domain 3HCDH_N PF02737.13 gi|336252805|ref|YP_004595912.1| - 0.018 14.6 0.3 0.034 13.7 0.2 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_10 PF13460.1 gi|336252805|ref|YP_004595912.1| - 0.043 13.8 0.7 0.48 10.4 0.1 2.6 2 1 1 3 3 3 0 NADH(P)-binding Shikimate_DH PF01488.15 gi|336252805|ref|YP_004595912.1| - 0.044 13.8 0.0 0.13 12.3 0.0 1.7 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase Thi4 PF01946.12 gi|336252805|ref|YP_004595912.1| - 0.05 12.6 0.4 0.1 11.6 0.0 1.6 2 0 0 2 2 2 0 Thi4 family NAD_binding_9 PF13454.1 gi|336252805|ref|YP_004595912.1| - 0.051 13.3 0.1 0.051 13.3 0.1 2.6 3 0 0 3 3 2 0 FAD-NAD(P)-binding DUF1990 PF09348.5 gi|336252805|ref|YP_004595912.1| - 0.083 12.5 0.0 0.25 10.9 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF1990) FAD_binding_2 PF00890.19 gi|336252805|ref|YP_004595912.1| - 0.13 11.0 0.4 0.54 9.0 0.0 1.9 2 0 0 2 2 2 0 FAD binding domain ThiF PF00899.16 gi|336252805|ref|YP_004595912.1| - 0.13 12.0 0.1 0.22 11.3 0.1 1.3 1 0 0 1 1 1 0 ThiF family NAD_binding_2 PF03446.10 gi|336252805|ref|YP_004595912.1| - 0.17 11.7 0.1 0.27 11.0 0.0 1.3 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Ring_hydroxyl_A PF00848.14 gi|336252806|ref|YP_004595913.1| - 3e-28 98.9 5.6 4.7e-28 98.2 3.9 1.3 1 0 0 1 1 1 1 Ring hydroxylating alpha subunit (catalytic domain) Rieske PF00355.21 gi|336252806|ref|YP_004595913.1| - 1.1e-18 66.5 0.0 2e-18 65.7 0.0 1.4 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.1 gi|336252806|ref|YP_004595913.1| - 0.075 12.7 0.0 0.19 11.4 0.0 1.6 2 0 0 2 2 2 0 Rieske-like [2Fe-2S] domain NUDIX PF00293.23 gi|336252807|ref|YP_004595914.1| - 0.067 12.8 0.1 0.095 12.3 0.1 1.3 1 0 0 1 1 1 0 NUDIX domain DUF3349 PF11829.3 gi|336252807|ref|YP_004595914.1| - 0.12 12.7 0.0 0.2 12.0 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3349) HTH_10 PF04967.7 gi|336252808|ref|YP_004595915.1| - 3.1e-15 55.4 0.0 5.1e-15 54.8 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_AsnC-type PF13404.1 gi|336252808|ref|YP_004595915.1| - 0.001 18.5 0.1 0.0023 17.4 0.1 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|336252808|ref|YP_004595915.1| - 0.0066 15.8 0.0 0.079 12.4 0.0 2.4 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_24 PF13412.1 gi|336252808|ref|YP_004595915.1| - 0.012 15.0 0.0 0.022 14.1 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Sigma70_r4 PF04545.11 gi|336252808|ref|YP_004595915.1| - 0.017 14.4 0.1 0.043 13.1 0.0 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 Homeobox PF00046.24 gi|336252808|ref|YP_004595915.1| - 0.12 12.0 0.0 0.29 10.7 0.0 1.6 1 0 0 1 1 1 0 Homeobox domain HTH_3 PF01381.17 gi|336252808|ref|YP_004595915.1| - 0.13 12.1 0.0 0.26 11.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix AhpC-TSA PF00578.16 gi|336252809|ref|YP_004595916.1| - 1.1e-15 57.4 0.0 1.4e-15 57.0 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|336252809|ref|YP_004595916.1| - 5e-09 35.8 0.0 6.2e-09 35.5 0.0 1.2 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.1 gi|336252809|ref|YP_004595916.1| - 4.2e-05 23.4 0.0 5.1e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA antioxidant enzyme Acetyltransf_10 PF13673.1 gi|336252810|ref|YP_004595917.1| - 1.1e-09 38.4 0.3 1.5e-09 37.9 0.2 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|336252810|ref|YP_004595917.1| - 2.1e-08 34.0 4.6 3.8e-07 30.0 3.2 2.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|336252810|ref|YP_004595917.1| - 1.4e-07 31.5 0.4 5e-07 29.7 0.3 1.9 1 1 1 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|336252810|ref|YP_004595917.1| - 0.00014 21.6 0.5 0.00035 20.4 0.4 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|336252810|ref|YP_004595917.1| - 0.0015 18.1 2.1 0.0093 15.7 0.9 2.3 1 1 1 2 2 2 1 FR47-like protein Acetyltransf_CG PF14542.1 gi|336252810|ref|YP_004595917.1| - 0.1 12.5 0.2 0.26 11.1 0.0 1.7 1 1 1 2 2 2 0 GCN5-related N-acetyl-transferase DUF3749 PF12568.3 gi|336252810|ref|YP_004595917.1| - 2 8.0 6.2 3.7 7.1 4.3 1.6 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Chromate_transp PF02417.10 gi|336252811|ref|YP_004595918.1| - 0.09 12.3 6.0 0.14 11.7 4.2 1.3 1 0 0 1 1 1 0 Chromate transporter DUF3353 PF11833.3 gi|336252811|ref|YP_004595918.1| - 0.21 10.9 3.2 0.27 10.6 2.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3353) CTP_transf_2 PF01467.21 gi|336252812|ref|YP_004595919.1| - 3.7e-12 46.5 0.6 9.4e-12 45.2 0.4 1.7 1 1 0 1 1 1 1 Cytidylyltransferase FAD_syn PF06574.7 gi|336252812|ref|YP_004595919.1| - 0.039 13.5 0.0 0.084 12.4 0.0 1.6 2 0 0 2 2 2 0 FAD synthetase SHOCT PF09851.4 gi|336252813|ref|YP_004595920.1| - 0.00016 21.0 4.1 0.00038 19.8 2.7 1.8 1 1 1 2 2 2 1 Short C-terminal domain DUF1707 PF08044.6 gi|336252813|ref|YP_004595920.1| - 0.064 13.0 0.3 0.12 12.1 0.2 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1707) GvpG PF05120.7 gi|336252813|ref|YP_004595920.1| - 0.08 12.7 0.2 0.14 11.9 0.1 1.4 1 0 0 1 1 1 0 Gas vesicle protein G FA_desaturase PF00487.19 gi|336252813|ref|YP_004595920.1| - 0.3 10.4 2.8 0.36 10.2 2.0 1.1 1 0 0 1 1 1 0 Fatty acid desaturase Helicase_C_2 PF13307.1 gi|336252814|ref|YP_004595921.1| - 7.7e-34 117.0 0.0 1.6e-33 116.0 0.0 1.5 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.10 gi|336252814|ref|YP_004595921.1| - 3.8e-09 36.2 0.0 2e-08 33.8 0.0 2.2 1 1 0 1 1 1 1 DEAD_2 AAA_19 PF13245.1 gi|336252814|ref|YP_004595921.1| - 9.8e-05 22.0 0.0 0.00047 19.8 0.0 2.2 1 0 0 1 1 1 1 Part of AAA domain DEAD PF00270.24 gi|336252814|ref|YP_004595921.1| - 0.0001 21.8 0.0 0.24 10.8 0.0 2.4 2 0 0 2 2 2 2 DEAD/DEAH box helicase PhoH PF02562.11 gi|336252814|ref|YP_004595921.1| - 0.00023 20.4 0.0 0.00048 19.4 0.0 1.4 1 0 0 1 1 1 1 PhoH-like protein ResIII PF04851.10 gi|336252814|ref|YP_004595921.1| - 0.00025 20.9 0.0 0.0023 17.8 0.0 2.1 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit DUF2075 PF09848.4 gi|336252814|ref|YP_004595921.1| - 0.0083 15.1 0.0 0.051 12.5 0.0 2.0 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) AAA_30 PF13604.1 gi|336252814|ref|YP_004595921.1| - 0.028 14.0 0.0 0.83 9.2 0.0 2.3 2 0 0 2 2 2 0 AAA domain UvrD-helicase PF00580.16 gi|336252814|ref|YP_004595921.1| - 0.16 11.2 0.0 0.24 10.6 0.0 1.2 1 0 0 1 1 1 0 UvrD/REP helicase N-terminal domain Abi PF02517.11 gi|336252815|ref|YP_004595922.1| - 5.2e-11 42.5 7.9 5.2e-11 42.5 5.5 2.3 2 1 0 2 2 2 1 CAAX protease self-immunity DUF1684 PF07920.6 gi|336252817|ref|YP_004595924.1| - 1.1e-50 171.2 0.1 1.5e-50 170.8 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1684) Methyltransf_11 PF08241.7 gi|336252818|ref|YP_004595925.1| - 8.2e-25 87.1 0.0 1.3e-24 86.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|336252818|ref|YP_004595925.1| - 1e-15 57.6 0.0 1.3e-15 57.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|336252818|ref|YP_004595925.1| - 5.2e-14 52.4 0.0 1.1e-13 51.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|336252818|ref|YP_004595925.1| - 8.3e-14 51.6 0.0 1.1e-13 51.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|336252818|ref|YP_004595925.1| - 1.1e-11 45.2 0.0 2.3e-11 44.2 0.0 1.5 2 0 0 2 2 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|336252818|ref|YP_004595925.1| - 4.1e-11 42.4 0.0 8.7e-11 41.3 0.0 1.4 1 1 1 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.7 gi|336252818|ref|YP_004595925.1| - 6.9e-11 42.5 0.0 1.1e-10 41.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|336252818|ref|YP_004595925.1| - 1.1e-08 35.1 0.3 2.4e-08 33.9 0.1 1.7 2 0 0 2 2 2 1 Methyltransferase domain CMAS PF02353.15 gi|336252818|ref|YP_004595925.1| - 0.00012 21.2 0.0 0.00018 20.7 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MetW PF07021.7 gi|336252818|ref|YP_004595925.1| - 0.00027 20.3 0.0 0.00045 19.6 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_9 PF08003.6 gi|336252818|ref|YP_004595925.1| - 0.00035 19.3 0.0 0.00078 18.2 0.0 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_32 PF13679.1 gi|336252818|ref|YP_004595925.1| - 0.00058 19.5 0.0 0.00098 18.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|336252818|ref|YP_004595925.1| - 0.0013 18.1 0.0 0.0025 17.2 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_8 PF05148.10 gi|336252818|ref|YP_004595925.1| - 0.0025 17.4 0.0 0.0082 15.7 0.0 1.7 1 1 0 1 1 1 1 Hypothetical methyltransferase PCMT PF01135.14 gi|336252818|ref|YP_004595925.1| - 0.0028 17.1 0.0 0.0049 16.4 0.0 1.6 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) N6_N4_Mtase PF01555.13 gi|336252818|ref|YP_004595925.1| - 0.0039 16.7 0.0 0.66 9.4 0.0 2.3 2 1 0 2 2 2 1 DNA methylase Fibrillarin PF01269.12 gi|336252818|ref|YP_004595925.1| - 0.03 13.2 0.0 0.051 12.4 0.0 1.3 1 0 0 1 1 1 0 Fibrillarin FtsJ PF01728.14 gi|336252818|ref|YP_004595925.1| - 0.11 12.5 0.0 0.84 9.5 0.0 2.0 1 1 0 1 1 1 0 FtsJ-like methyltransferase PrmA PF06325.8 gi|336252818|ref|YP_004595925.1| - 0.13 11.3 0.0 0.27 10.3 0.0 1.5 2 0 0 2 2 2 0 Ribosomal protein L11 methyltransferase (PrmA) KaiC PF06745.8 gi|336252819|ref|YP_004595926.1| - 0.00025 20.2 0.0 0.00031 19.9 0.0 1.1 1 0 0 1 1 1 1 KaiC SIP PF04954.8 gi|336252819|ref|YP_004595926.1| - 0.038 14.3 0.0 0.088 13.1 0.0 1.6 1 0 0 1 1 1 0 Siderophore-interacting protein EF-hand_5 PF13202.1 gi|336252819|ref|YP_004595926.1| - 0.73 9.2 6.2 0.48 9.8 1.3 2.6 2 0 0 2 2 2 0 EF hand DUF2072 PF09845.4 gi|336252821|ref|YP_004595928.1| - 2.3e-28 98.7 0.3 6e-13 48.8 0.1 2.5 2 0 0 2 2 2 2 Zn-ribbon containing protein (DUF2072) DUF1451 PF07295.6 gi|336252821|ref|YP_004595928.1| - 0.099 12.4 0.7 0.19 11.4 0.5 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) zf-C2H2_6 PF13912.1 gi|336252821|ref|YP_004595928.1| - 0.15 12.0 1.0 0.26 11.2 0.1 1.9 2 0 0 2 2 2 0 C2H2-type zinc finger zf-C2HC_2 PF13913.1 gi|336252821|ref|YP_004595928.1| - 0.23 11.1 1.0 0.4 10.4 0.7 1.3 1 0 0 1 1 1 0 zinc-finger of a C2HC-type zinc_ribbon_2 PF13240.1 gi|336252821|ref|YP_004595928.1| - 0.32 10.5 4.6 0.56 9.7 3.2 1.4 1 0 0 1 1 1 0 zinc-ribbon domain zf-C2H2 PF00096.21 gi|336252821|ref|YP_004595928.1| - 3.1 8.3 5.1 1.9 8.9 0.4 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type DUF2073 PF09846.4 gi|336252822|ref|YP_004595929.1| - 2e-45 152.6 0.6 2.4e-45 152.4 0.4 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2073) MMR_HSR1 PF01926.18 gi|336252823|ref|YP_004595930.1| - 9.4e-16 57.8 0.0 1.3e-15 57.3 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU PF00009.22 gi|336252823|ref|YP_004595930.1| - 1.1e-12 47.8 0.4 6.3e-06 25.7 0.0 2.7 2 2 0 2 2 2 2 Elongation factor Tu GTP binding domain Arf PF00025.16 gi|336252823|ref|YP_004595930.1| - 4.8e-08 32.4 0.0 0.00013 21.2 0.1 2.5 2 1 1 3 3 3 2 ADP-ribosylation factor family FeoB_N PF02421.13 gi|336252823|ref|YP_004595930.1| - 1.5e-05 24.2 0.2 0.00012 21.4 0.1 2.2 1 1 0 1 1 1 1 Ferrous iron transport protein B AAA_17 PF13207.1 gi|336252823|ref|YP_004595930.1| - 2e-05 25.3 0.7 5.1e-05 24.0 0.5 1.9 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|336252823|ref|YP_004595930.1| - 6.3e-05 23.2 0.0 0.00014 22.1 0.0 1.8 1 1 1 2 2 2 1 AAA domain NB-ARC PF00931.17 gi|336252823|ref|YP_004595930.1| - 9.9e-05 21.3 0.0 0.00034 19.5 0.0 1.7 2 0 0 2 2 2 1 NB-ARC domain Septin PF00735.13 gi|336252823|ref|YP_004595930.1| - 0.00017 20.6 0.0 0.00019 20.5 0.0 1.3 1 0 0 1 1 1 1 Septin SRPRB PF09439.5 gi|336252823|ref|YP_004595930.1| - 0.00029 20.1 0.0 0.06 12.5 0.0 2.2 2 0 0 2 2 2 1 Signal recognition particle receptor beta subunit AAA_22 PF13401.1 gi|336252823|ref|YP_004595930.1| - 0.0003 20.9 0.0 0.00056 20.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain Miro PF08477.8 gi|336252823|ref|YP_004595930.1| - 0.00032 21.1 0.0 0.0011 19.3 0.0 1.9 1 1 0 1 1 1 1 Miro-like protein AAA_16 PF13191.1 gi|336252823|ref|YP_004595930.1| - 0.00046 20.2 0.0 0.00076 19.5 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.24 gi|336252823|ref|YP_004595930.1| - 0.00077 19.6 0.1 0.017 15.3 0.0 2.3 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Ras PF00071.17 gi|336252823|ref|YP_004595930.1| - 0.00087 18.7 0.1 0.36 10.2 0.0 2.5 2 1 0 2 2 2 1 Ras family Dynamin_N PF00350.18 gi|336252823|ref|YP_004595930.1| - 0.0029 17.4 0.0 0.2 11.4 0.0 2.3 1 1 0 2 2 2 1 Dynamin family Arch_ATPase PF01637.13 gi|336252823|ref|YP_004595930.1| - 0.0032 17.2 0.0 0.062 12.9 0.0 2.0 1 1 1 2 2 2 1 Archaeal ATPase AAA_28 PF13521.1 gi|336252823|ref|YP_004595930.1| - 0.0049 16.8 0.2 0.017 15.1 0.0 1.8 1 1 1 2 2 2 1 AAA domain Zeta_toxin PF06414.7 gi|336252823|ref|YP_004595930.1| - 0.0052 15.9 0.0 0.014 14.5 0.0 1.7 1 1 1 2 2 2 1 Zeta toxin RNA_helicase PF00910.17 gi|336252823|ref|YP_004595930.1| - 0.0094 16.1 0.0 0.014 15.5 0.0 1.4 1 0 0 1 1 1 1 RNA helicase ABC_tran PF00005.22 gi|336252823|ref|YP_004595930.1| - 0.0095 16.2 0.0 0.014 15.6 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_19 PF13245.1 gi|336252823|ref|YP_004595930.1| - 0.014 15.1 0.1 0.04 13.6 0.0 1.8 2 0 0 2 2 1 0 Part of AAA domain AAA_25 PF13481.1 gi|336252823|ref|YP_004595930.1| - 0.017 14.5 0.1 0.04 13.3 0.0 1.7 1 1 0 1 1 1 0 AAA domain cobW PF02492.14 gi|336252823|ref|YP_004595930.1| - 0.018 14.5 0.2 0.97 8.8 0.2 2.4 1 1 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_14 PF13173.1 gi|336252823|ref|YP_004595930.1| - 0.035 14.0 0.0 0.062 13.1 0.0 1.8 1 1 0 1 1 1 0 AAA domain MMR_HSR1_C PF08438.5 gi|336252823|ref|YP_004595930.1| - 0.036 14.3 0.1 0.11 12.7 0.0 1.8 2 0 0 2 2 2 0 GTPase of unknown function C-terminal RuvB_N PF05496.7 gi|336252823|ref|YP_004595930.1| - 0.053 12.5 0.0 0.087 11.8 0.0 1.3 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus NTPase_1 PF03266.10 gi|336252823|ref|YP_004595930.1| - 0.062 12.9 0.0 0.11 12.1 0.0 1.6 1 1 0 1 1 1 0 NTPase NACHT PF05729.7 gi|336252823|ref|YP_004595930.1| - 0.065 12.8 0.0 0.1 12.2 0.0 1.3 1 0 0 1 1 1 0 NACHT domain ArgK PF03308.11 gi|336252823|ref|YP_004595930.1| - 0.071 11.8 0.1 0.72 8.5 0.0 2.4 2 1 0 2 2 2 0 ArgK protein DUF258 PF03193.11 gi|336252823|ref|YP_004595930.1| - 0.075 12.2 0.0 0.14 11.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 MobB PF03205.9 gi|336252823|ref|YP_004595930.1| - 0.092 12.4 0.0 0.23 11.1 0.0 1.7 1 1 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ATP-synt_ab PF00006.20 gi|336252823|ref|YP_004595930.1| - 0.097 12.1 0.0 0.15 11.5 0.0 1.4 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain ATP_bind_1 PF03029.12 gi|336252823|ref|YP_004595930.1| - 0.099 12.1 0.1 4.7 6.6 0.0 2.8 3 1 0 3 3 3 0 Conserved hypothetical ATP binding protein Parvo_NS1 PF01057.12 gi|336252823|ref|YP_004595930.1| - 0.11 11.4 0.0 0.17 10.6 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 AAA_24 PF13479.1 gi|336252823|ref|YP_004595930.1| - 0.16 11.5 2.3 0.32 10.5 1.6 1.7 1 1 0 1 1 1 0 AAA domain Cdc6_C PF09079.6 gi|336252824|ref|YP_004595931.1| - 1.4e-27 95.2 0.1 3.6e-27 93.8 0.1 1.8 1 0 0 1 1 1 1 CDC6, C terminal AAA_16 PF13191.1 gi|336252824|ref|YP_004595931.1| - 2.5e-10 40.6 0.2 2.8e-08 33.9 0.0 2.9 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|336252824|ref|YP_004595931.1| - 2.1e-09 37.6 0.1 2e-06 27.9 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA PF00004.24 gi|336252824|ref|YP_004595931.1| - 3e-09 37.1 0.1 0.0024 18.0 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|336252824|ref|YP_004595931.1| - 0.00045 20.0 0.4 0.0062 16.2 0.2 2.3 1 1 0 1 1 1 1 Archaeal ATPase RuvB_N PF05496.7 gi|336252824|ref|YP_004595931.1| - 0.00045 19.3 0.0 0.0011 18.0 0.0 1.6 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_18 PF13238.1 gi|336252824|ref|YP_004595931.1| - 0.00065 20.0 0.4 0.0077 16.5 0.0 2.5 2 0 0 2 2 2 1 AAA domain T2SE PF00437.15 gi|336252824|ref|YP_004595931.1| - 0.00069 18.5 0.0 0.0012 17.8 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_17 PF13207.1 gi|336252824|ref|YP_004595931.1| - 0.0014 19.4 0.0 0.0061 17.3 0.0 2.1 1 0 0 1 1 1 1 AAA domain Sigma54_activat PF00158.21 gi|336252824|ref|YP_004595931.1| - 0.0026 17.2 0.0 0.0059 16.0 0.0 1.6 1 0 0 1 1 1 1 Sigma-54 interaction domain DUF815 PF05673.8 gi|336252824|ref|YP_004595931.1| - 0.0029 16.5 0.0 0.0069 15.3 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF815) AAA_2 PF07724.9 gi|336252824|ref|YP_004595931.1| - 0.0057 16.5 0.1 4.2 7.2 0.0 2.4 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) DEAD PF00270.24 gi|336252824|ref|YP_004595931.1| - 0.0082 15.6 0.4 3 7.3 0.0 2.9 3 0 0 3 3 3 1 DEAD/DEAH box helicase AAA_32 PF13654.1 gi|336252824|ref|YP_004595931.1| - 0.021 13.4 0.2 0.99 7.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|336252824|ref|YP_004595931.1| - 0.023 15.0 0.0 0.077 13.2 0.0 1.9 1 0 0 1 1 1 0 ABC transporter NB-ARC PF00931.17 gi|336252824|ref|YP_004595931.1| - 0.032 13.1 0.0 0.053 12.3 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_24 PF13479.1 gi|336252824|ref|YP_004595931.1| - 0.032 13.8 0.1 0.069 12.7 0.1 1.5 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|336252824|ref|YP_004595931.1| - 0.092 12.9 0.0 0.2 11.8 0.0 1.6 1 0 0 1 1 1 0 RNA helicase Sigma54_activ_2 PF14532.1 gi|336252824|ref|YP_004595931.1| - 0.11 12.4 0.0 0.23 11.5 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain FtsK_SpoIIIE PF01580.13 gi|336252824|ref|YP_004595931.1| - 0.12 11.8 0.1 0.52 9.7 0.0 2.0 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_23 PF13476.1 gi|336252824|ref|YP_004595931.1| - 3.3 7.9 5.7 79 3.4 3.9 2.7 1 1 0 1 1 1 0 AAA domain TAT_signal PF10518.4 gi|336252825|ref|YP_004595932.1| - 0.0026 17.6 1.3 0.0038 17.1 0.9 1.2 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Peptidase_S24 PF00717.18 gi|336252826|ref|YP_004595933.1| - 9e-06 25.2 0.3 2.5e-05 23.8 0.2 1.8 1 1 0 1 1 1 1 Peptidase S24-like DNA_pol_E_B PF04042.11 gi|336252827|ref|YP_004595934.1| - 9.8e-14 51.1 0.0 1.4e-13 50.5 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase alpha/epsilon subunit B Metallophos_2 PF12850.2 gi|336252827|ref|YP_004595934.1| - 2.5e-13 50.1 1.4 1e-12 48.1 1.0 1.9 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|336252827|ref|YP_004595934.1| - 1.2e-07 31.2 1.6 2.9e-07 30.1 1.1 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase HTH_20 PF12840.2 gi|336252828|ref|YP_004595935.1| - 7.2e-09 35.3 0.1 1.1e-08 34.7 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|336252828|ref|YP_004595935.1| - 5.7e-07 29.1 0.0 8.1e-07 28.6 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|336252828|ref|YP_004595935.1| - 4e-06 26.3 0.1 6.3e-06 25.7 0.1 1.3 1 0 0 1 1 1 1 MarR family PadR PF03551.9 gi|336252828|ref|YP_004595935.1| - 8.1e-06 25.5 0.0 9.5e-05 22.0 0.0 2.2 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family HTH_11 PF08279.7 gi|336252828|ref|YP_004595935.1| - 1.9e-05 24.2 0.0 2.8e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.1 gi|336252828|ref|YP_004595935.1| - 2.4e-05 23.6 0.1 5.7e-05 22.4 0.1 1.6 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|336252828|ref|YP_004595935.1| - 7.9e-05 22.2 0.0 0.00012 21.6 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Rrf2 PF02082.15 gi|336252828|ref|YP_004595935.1| - 0.013 15.6 0.0 0.022 14.8 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator MarR PF01047.17 gi|336252828|ref|YP_004595935.1| - 0.028 14.1 0.0 0.047 13.4 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_AsnC-type PF13404.1 gi|336252828|ref|YP_004595935.1| - 0.039 13.4 0.1 0.082 12.4 0.0 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain TFIIE_alpha PF02002.12 gi|336252828|ref|YP_004595935.1| - 0.039 13.4 0.0 0.06 12.8 0.0 1.3 1 0 0 1 1 1 0 TFIIE alpha subunit ArsR PF09824.4 gi|336252828|ref|YP_004595935.1| - 0.041 13.1 0.0 0.05 12.9 0.0 1.1 1 0 0 1 1 1 0 ArsR transcriptional regulator HTH_36 PF13730.1 gi|336252828|ref|YP_004595935.1| - 0.047 13.8 0.0 0.08 13.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HxlR PF01638.12 gi|336252828|ref|YP_004595935.1| - 0.048 13.2 0.0 0.061 12.9 0.0 1.3 1 0 0 1 1 1 0 HxlR-like helix-turn-helix HTH_IclR PF09339.5 gi|336252828|ref|YP_004595935.1| - 0.054 13.0 0.0 0.087 12.4 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain GntR PF00392.16 gi|336252828|ref|YP_004595935.1| - 0.054 12.9 0.1 0.1 12.0 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family FUR PF01475.14 gi|336252828|ref|YP_004595935.1| - 0.055 13.3 0.0 0.074 12.9 0.0 1.4 1 0 0 1 1 1 0 Ferric uptake regulator family Sulfolobus_pRN PF05584.6 gi|336252828|ref|YP_004595935.1| - 0.06 13.3 0.1 0.08 12.9 0.1 1.2 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein HTH_34 PF13601.1 gi|336252828|ref|YP_004595935.1| - 0.083 12.9 0.0 0.29 11.1 0.0 1.8 1 1 0 1 1 1 0 Winged helix DNA-binding domain DUF1887 PF09002.6 gi|336252829|ref|YP_004595936.1| - 0.01 14.2 0.0 0.015 13.7 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1887) Cas_Cas02710 PF09670.5 gi|336252829|ref|YP_004595936.1| - 0.084 11.4 0.0 0.11 11.0 0.0 1.1 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_Cas02710) TetR_C_6 PF13977.1 gi|336252830|ref|YP_004595937.1| - 4.2e-11 42.8 5.6 4.2e-11 42.8 3.9 1.6 2 0 0 2 2 2 1 Bacterial transcriptional repressor TetR_N PF00440.18 gi|336252830|ref|YP_004595937.1| - 4.4e-08 32.6 0.0 8.4e-08 31.7 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family WHG PF13305.1 gi|336252830|ref|YP_004595937.1| - 0.003 18.0 0.9 0.043 14.4 0.3 2.9 2 1 0 2 2 2 1 WHG domain DUF3139 PF11337.3 gi|336252830|ref|YP_004595937.1| - 0.046 14.0 0.0 0.079 13.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3139) DUF4427 PF14468.1 gi|336252831|ref|YP_004595938.1| - 0.15 11.7 0.0 0.23 11.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4427) AA_kinase PF00696.23 gi|336252832|ref|YP_004595939.1| - 1.8e-47 161.9 4.1 2.5e-47 161.4 1.6 1.8 2 0 0 2 2 2 1 Amino acid kinase family ACT_7 PF13840.1 gi|336252832|ref|YP_004595939.1| - 9e-14 50.7 0.0 3e-07 29.8 0.0 2.5 2 0 0 2 2 2 2 ACT domain ACT PF01842.20 gi|336252832|ref|YP_004595939.1| - 3.9e-08 32.6 3.7 0.019 14.4 0.0 3.6 3 0 0 3 3 3 2 ACT domain ACT_4 PF13291.1 gi|336252832|ref|YP_004595939.1| - 0.0031 17.7 0.0 3.2 8.1 0.0 2.7 2 0 0 2 2 2 2 ACT domain ACT_6 PF13740.1 gi|336252832|ref|YP_004595939.1| - 0.1 12.3 0.2 15 5.4 0.1 2.7 2 0 0 2 2 2 0 ACT domain Zn_Tnp_IS1595 PF12760.2 gi|336252833|ref|YP_004595940.1| - 7.6e-05 22.4 2.4 9.1e-05 22.1 1.7 1.1 1 0 0 1 1 1 1 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|336252833|ref|YP_004595940.1| - 0.0022 17.1 0.6 0.47 9.7 0.0 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|336252833|ref|YP_004595940.1| - 0.0058 16.1 1.7 0.042 13.4 1.1 2.0 1 1 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|336252833|ref|YP_004595940.1| - 0.009 15.6 1.8 0.064 12.9 1.3 2.0 1 1 0 1 1 1 1 zinc-ribbon domain zf-C2HC_2 PF13913.1 gi|336252833|ref|YP_004595940.1| - 0.013 15.1 3.7 0.81 9.4 0.1 2.4 2 0 0 2 2 2 0 zinc-finger of a C2HC-type Zn-ribbon_8 PF09723.5 gi|336252833|ref|YP_004595940.1| - 0.025 14.5 3.0 1.5 8.7 0.1 2.1 2 0 0 2 2 2 0 Zinc ribbon domain DUF2387 PF09526.5 gi|336252833|ref|YP_004595940.1| - 0.034 14.0 0.9 0.051 13.5 0.6 1.3 1 1 0 1 1 1 0 Probable metal-binding protein (DUF2387) Ribosomal_S27e PF01667.12 gi|336252833|ref|YP_004595940.1| - 0.051 13.1 0.4 0.091 12.3 0.3 1.4 1 1 0 1 1 1 0 Ribosomal protein S27 DZR PF12773.2 gi|336252833|ref|YP_004595940.1| - 0.11 12.3 1.8 0.16 11.8 0.8 1.5 1 1 0 1 1 1 0 Double zinc ribbon Prok-RING_1 PF14446.1 gi|336252833|ref|YP_004595940.1| - 0.17 11.6 1.7 5 6.9 0.0 2.1 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 Cys_rich_CPXG PF14255.1 gi|336252833|ref|YP_004595940.1| - 0.31 10.8 1.8 1 9.2 1.4 1.8 1 1 1 2 2 2 0 Cysteine-rich CPXCG zf-dskA_traR PF01258.12 gi|336252833|ref|YP_004595940.1| - 0.47 10.2 2.7 0.57 9.9 0.0 2.2 2 1 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger UPF0547 PF10571.4 gi|336252833|ref|YP_004595940.1| - 0.51 10.0 3.0 16 5.3 0.0 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Beta_elim_lyase PF01212.16 gi|336252834|ref|YP_004595941.1| - 4e-76 255.9 0.2 7.5e-76 255.0 0.2 1.4 1 1 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|336252834|ref|YP_004595941.1| - 1.2e-06 27.8 1.7 6.6e-06 25.3 1.2 1.9 1 1 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family SBP_bac_6 PF13343.1 gi|336252836|ref|YP_004595943.1| - 9.3e-21 74.2 0.0 1.3e-20 73.7 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|336252836|ref|YP_004595943.1| - 8e-13 48.7 0.0 1.1e-12 48.2 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|336252836|ref|YP_004595943.1| - 1e-06 28.5 0.1 1.5e-06 27.9 0.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|336252836|ref|YP_004595943.1| - 0.011 15.4 0.0 0.015 15.0 0.0 1.3 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein UPF0118 PF01594.11 gi|336252837|ref|YP_004595944.1| - 9.8e-32 110.2 36.6 1.9e-31 109.2 25.4 1.4 1 1 0 1 1 1 1 Domain of unknown function DUF20 DUF456 PF04306.8 gi|336252837|ref|YP_004595944.1| - 0.00077 19.5 34.9 0.0013 18.7 8.7 3.3 3 0 0 3 3 3 2 Protein of unknown function (DUF456) DUF1418 PF07214.7 gi|336252837|ref|YP_004595944.1| - 0.36 10.4 3.4 1.5 8.4 2.4 2.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1418) Rick_17kDa_Anti PF05433.10 gi|336252838|ref|YP_004595945.1| - 4.1 7.1 21.8 5.6 6.7 0.2 4.0 3 1 0 3 3 3 0 Glycine zipper 2TM domain FecCD PF01032.13 gi|336252839|ref|YP_004595946.1| - 1.9e-91 306.1 35.1 3.4e-91 305.3 24.3 1.3 1 1 0 1 1 1 1 FecCD transport family ABC-3 PF00950.12 gi|336252839|ref|YP_004595946.1| - 0.005 16.1 20.6 0.028 13.7 14.4 2.0 1 1 1 2 2 2 1 ABC 3 transport family ABC_tran PF00005.22 gi|336252840|ref|YP_004595947.1| - 1.8e-31 109.2 0.0 2.4e-31 108.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|336252840|ref|YP_004595947.1| - 2.9e-12 47.1 3.7 7.4e-06 26.1 0.2 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|336252840|ref|YP_004595947.1| - 1.3e-10 40.8 0.3 4.1e-05 22.9 0.0 2.1 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|336252840|ref|YP_004595947.1| - 2.4e-06 26.9 0.1 4.8e-06 26.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|336252840|ref|YP_004595947.1| - 6.6e-06 25.6 1.8 5.1e-05 22.7 1.2 2.2 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|336252840|ref|YP_004595947.1| - 6.8e-06 25.3 0.0 0.088 11.8 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.1 gi|336252840|ref|YP_004595947.1| - 6.8e-05 23.0 2.1 0.001 19.2 1.4 2.2 1 1 0 1 1 1 1 AAA domain ABC_ATPase PF09818.4 gi|336252840|ref|YP_004595947.1| - 9.2e-05 21.2 0.4 0.011 14.2 0.0 2.6 2 1 0 2 2 2 1 Predicted ATPase of the ABC class AAA_23 PF13476.1 gi|336252840|ref|YP_004595947.1| - 0.00014 22.2 0.1 0.00032 21.1 0.1 1.3 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|336252840|ref|YP_004595947.1| - 0.001 19.8 0.1 0.0032 18.2 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|336252840|ref|YP_004595947.1| - 0.0013 18.7 6.5 0.013 15.4 4.5 2.0 1 1 0 1 1 1 1 AAA ATPase domain NACHT PF05729.7 gi|336252840|ref|YP_004595947.1| - 0.0023 17.6 0.4 0.0066 16.1 0.1 1.9 2 0 0 2 2 2 1 NACHT domain AAA_10 PF12846.2 gi|336252840|ref|YP_004595947.1| - 0.0024 17.3 0.2 0.0061 16.0 0.1 1.7 2 0 0 2 2 2 1 AAA-like domain AAA_33 PF13671.1 gi|336252840|ref|YP_004595947.1| - 0.0046 16.8 2.5 0.0049 16.7 0.2 2.2 2 1 0 2 2 1 1 AAA domain AAA_19 PF13245.1 gi|336252840|ref|YP_004595947.1| - 0.0077 15.9 0.0 0.021 14.5 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain DUF258 PF03193.11 gi|336252840|ref|YP_004595947.1| - 0.0083 15.3 0.2 0.015 14.4 0.2 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA PF00004.24 gi|336252840|ref|YP_004595947.1| - 0.009 16.2 0.0 0.021 14.9 0.0 1.7 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.1 gi|336252840|ref|YP_004595947.1| - 0.011 15.6 0.0 0.03 14.2 0.0 1.7 2 0 0 2 2 2 0 AAA domain UPF0079 PF02367.12 gi|336252840|ref|YP_004595947.1| - 0.016 14.8 0.1 0.029 14.0 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 MobB PF03205.9 gi|336252840|ref|YP_004595947.1| - 0.023 14.4 0.0 0.049 13.3 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B SRP54 PF00448.17 gi|336252840|ref|YP_004595947.1| - 0.03 13.7 0.0 0.068 12.6 0.0 1.6 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Arch_ATPase PF01637.13 gi|336252840|ref|YP_004595947.1| - 0.032 13.9 0.0 0.053 13.2 0.0 1.6 1 1 0 1 1 1 0 Archaeal ATPase AAA_30 PF13604.1 gi|336252840|ref|YP_004595947.1| - 0.059 12.9 0.1 0.13 11.8 0.0 1.5 2 0 0 2 2 2 0 AAA domain TIP49 PF06068.8 gi|336252840|ref|YP_004595947.1| - 0.062 11.9 0.0 0.11 11.2 0.0 1.3 1 0 0 1 1 1 0 TIP49 C-terminus MMR_HSR1 PF01926.18 gi|336252840|ref|YP_004595947.1| - 0.081 12.8 1.2 0.44 10.5 0.8 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase RecA PF00154.16 gi|336252840|ref|YP_004595947.1| - 0.083 11.9 0.0 0.15 11.0 0.0 1.4 1 0 0 1 1 1 0 recA bacterial DNA recombination protein ATP_bind_1 PF03029.12 gi|336252840|ref|YP_004595947.1| - 0.086 12.3 0.2 2.4 7.6 0.0 2.1 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein cobW PF02492.14 gi|336252840|ref|YP_004595947.1| - 0.11 11.8 0.1 0.26 10.7 0.0 1.6 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_18 PF13238.1 gi|336252840|ref|YP_004595947.1| - 0.14 12.5 0.1 0.37 11.0 0.0 1.7 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|336252840|ref|YP_004595947.1| - 0.14 12.3 0.0 0.27 11.4 0.0 1.5 1 0 0 1 1 1 0 RNA helicase NB-ARC PF00931.17 gi|336252840|ref|YP_004595947.1| - 0.22 10.3 1.1 0.3 9.8 0.0 1.6 2 0 0 2 2 2 0 NB-ARC domain Peripla_BP_2 PF01497.13 gi|336252841|ref|YP_004595948.1| - 2.5e-15 56.2 0.0 3.8e-15 55.6 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein MacB_PCD PF12704.2 gi|336252842|ref|YP_004595949.1| - 5.8e-32 111.1 0.8 5.8e-32 111.1 0.6 2.0 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|336252842|ref|YP_004595949.1| - 1.6e-26 92.4 7.1 1.6e-26 92.4 4.9 2.1 2 0 0 2 2 2 1 FtsX-like permease family ABC_tran PF00005.22 gi|336252843|ref|YP_004595950.1| - 2.8e-33 115.1 0.0 4.1e-33 114.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|336252843|ref|YP_004595950.1| - 2.8e-09 37.3 0.0 0.00026 21.0 0.0 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|336252843|ref|YP_004595950.1| - 2.3e-07 30.2 0.1 0.0019 17.4 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|336252843|ref|YP_004595950.1| - 3.5e-05 23.2 0.1 3.5e-05 23.2 0.1 1.8 2 0 0 2 2 1 1 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|336252843|ref|YP_004595950.1| - 0.00015 21.3 0.2 0.0002 20.9 0.1 1.3 1 1 0 1 1 1 1 AAA-like domain AAA_33 PF13671.1 gi|336252843|ref|YP_004595950.1| - 0.00073 19.4 0.4 0.0087 15.9 0.3 2.3 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|336252843|ref|YP_004595950.1| - 0.0011 18.4 1.4 0.0039 16.5 1.0 2.0 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|336252843|ref|YP_004595950.1| - 0.0021 17.2 0.1 0.0045 16.1 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|336252843|ref|YP_004595950.1| - 0.0095 15.9 1.5 0.043 13.8 1.0 2.2 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|336252843|ref|YP_004595950.1| - 0.01 15.9 0.5 0.12 12.5 0.1 2.1 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|336252843|ref|YP_004595950.1| - 0.01 16.6 1.1 0.033 14.9 0.7 2.2 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|336252843|ref|YP_004595950.1| - 0.02 15.1 0.1 0.67 10.2 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|336252843|ref|YP_004595950.1| - 0.027 14.8 0.0 0.041 14.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|336252843|ref|YP_004595950.1| - 0.037 13.9 0.2 0.2 11.6 0.2 2.2 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_19 PF13245.1 gi|336252843|ref|YP_004595950.1| - 0.21 11.3 2.0 1.1 9.0 0.1 2.8 3 0 0 3 3 3 0 Part of AAA domain Peptidase_S24 PF00717.18 gi|336252844|ref|YP_004595951.1| - 1.9e-07 30.6 1.2 5.1e-07 29.2 0.8 1.7 1 1 0 1 1 1 1 Peptidase S24-like TAT_signal PF10518.4 gi|336252845|ref|YP_004595952.1| - 0.012 15.5 5.7 0.027 14.4 4.0 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Rib_5-P_isom_A PF06026.9 gi|336252846|ref|YP_004595953.1| - 7.6e-57 191.3 0.0 9.4e-57 191.0 0.0 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.17 gi|336252846|ref|YP_004595953.1| - 7.9e-07 28.8 0.4 3.3e-05 23.5 0.1 2.2 2 0 0 2 2 2 1 DeoR C terminal sensor domain CoA_trans PF01144.18 gi|336252846|ref|YP_004595953.1| - 0.015 14.4 0.1 0.079 12.1 0.0 2.1 3 0 0 3 3 3 0 Coenzyme A transferase DUF1931 PF09123.6 gi|336252850|ref|YP_004595957.1| - 4.6e-05 23.3 1.2 5.1e-05 23.2 0.8 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1931) CBFD_NFYB_HMF PF00808.18 gi|336252850|ref|YP_004595957.1| - 0.0011 18.9 0.1 0.0018 18.2 0.1 1.4 1 1 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.19 gi|336252850|ref|YP_004595957.1| - 0.0013 18.8 0.0 0.0015 18.5 0.0 1.4 1 1 0 1 1 1 1 Core histone H2A/H2B/H3/H4 OmdA PF13376.1 gi|336252850|ref|YP_004595957.1| - 0.091 12.4 0.3 0.14 11.8 0.1 1.4 1 1 0 1 1 1 0 Bacteriocin-protection, YdeI or OmpD-Associated DUF2191 PF09957.4 gi|336252850|ref|YP_004595957.1| - 0.12 12.2 2.9 0.7 9.7 0.6 2.1 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2191) Glutaredoxin PF00462.19 gi|336252850|ref|YP_004595957.1| - 0.16 11.9 0.3 0.2 11.6 0.2 1.2 1 0 0 1 1 1 0 Glutaredoxin AIRC PF00731.15 gi|336252851|ref|YP_004595958.1| - 9.5e-16 57.4 6.4 1.5e-15 56.7 2.7 2.0 2 0 0 2 2 2 1 AIR carboxylase DUF1463 PF07316.6 gi|336252851|ref|YP_004595958.1| - 0.027 14.0 0.0 0.04 13.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1463) DUF2267 PF10025.4 gi|336252851|ref|YP_004595958.1| - 0.04 13.9 0.3 0.069 13.2 0.2 1.6 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2267) DZR PF12773.2 gi|336252852|ref|YP_004595959.1| - 0.0088 15.8 0.5 0.011 15.5 0.4 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|336252852|ref|YP_004595959.1| - 0.092 12.2 2.4 0.13 11.8 1.7 1.5 1 1 0 1 1 1 0 zinc-ribbon domain SerH PF06873.6 gi|336252852|ref|YP_004595959.1| - 0.11 11.0 0.9 0.12 10.9 0.7 1.0 1 0 0 1 1 1 0 Cell surface immobilisation antigen SerH Desulfoferrod_N PF06397.7 gi|336252852|ref|YP_004595959.1| - 0.13 11.7 0.9 1.1 8.7 0.2 2.0 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain Nudix_N_2 PF14803.1 gi|336252852|ref|YP_004595959.1| - 0.16 11.6 1.2 0.56 9.9 0.8 1.9 1 1 0 1 1 1 0 Nudix N-terminal zf-ribbon_3 PF13248.1 gi|336252852|ref|YP_004595959.1| - 0.17 11.1 2.4 0.67 9.2 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zf-RanBP PF00641.13 gi|336252852|ref|YP_004595959.1| - 1.1 8.4 4.8 6.5 5.9 0.2 2.1 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others GIY-YIG PF01541.19 gi|336252853|ref|YP_004595960.1| - 3e-13 49.9 0.1 3.4e-13 49.7 0.0 1.0 1 0 0 1 1 1 1 GIY-YIG catalytic domain T5orf172 PF10544.4 gi|336252853|ref|YP_004595960.1| - 0.059 13.7 0.2 0.08 13.3 0.1 1.4 1 1 0 1 1 1 0 T5orf172 domain FMN_red PF03358.10 gi|336252854|ref|YP_004595961.1| - 1.6e-32 112.1 0.0 2e-32 111.8 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|336252854|ref|YP_004595961.1| - 3.5e-11 42.9 0.0 5.8e-11 42.2 0.0 1.3 1 1 0 1 1 1 1 Flavodoxin-like fold PGM_PMM_I PF02878.11 gi|336252855|ref|YP_004595962.1| - 2.5e-38 130.7 0.0 4.7e-38 129.8 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|336252855|ref|YP_004595962.1| - 1.3e-22 80.1 1.4 3.1e-22 78.8 0.1 2.1 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.11 gi|336252855|ref|YP_004595962.1| - 2.4e-22 79.1 0.0 4.3e-22 78.2 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.15 gi|336252855|ref|YP_004595962.1| - 9.6e-15 54.3 0.5 2.7e-14 52.8 0.1 2.0 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain EndoU_bacteria PF14436.1 gi|336252856|ref|YP_004595963.1| - 0.00079 19.2 0.1 0.0017 18.1 0.1 1.5 1 0 0 1 1 1 1 Bacterial EndoU nuclease GAT PF03127.9 gi|336252856|ref|YP_004595963.1| - 0.0041 17.0 1.9 0.011 15.6 1.4 1.7 1 0 0 1 1 1 1 GAT domain UPF0150 PF03681.10 gi|336252861|ref|YP_004595968.1| - 0.078 12.6 0.2 0.17 11.5 0.1 1.6 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0150) Zn_Tnp_IS1 PF03811.8 gi|336252861|ref|YP_004595968.1| - 0.098 12.1 0.2 0.21 11.1 0.1 1.4 1 0 0 1 1 1 0 InsA N-terminal domain Lar_restr_allev PF14354.1 gi|336252861|ref|YP_004595968.1| - 0.1 12.9 1.2 0.25 11.6 0.6 1.9 1 1 1 2 2 2 0 Restriction alleviation protein Lar DNA_ligase_ZBD PF03119.11 gi|336252861|ref|YP_004595968.1| - 0.13 12.0 0.5 0.29 10.8 0.1 1.8 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Hexapep PF00132.19 gi|336252862|ref|YP_004595969.1| - 5e-15 54.2 6.7 2.6e-09 36.1 0.5 3.4 2 1 0 3 3 3 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|336252862|ref|YP_004595969.1| - 2.2e-07 30.3 8.3 1e-06 28.1 1.2 3.0 2 1 0 2 2 2 2 Hexapeptide repeat of succinyl-transferase SATase_N PF06426.9 gi|336252862|ref|YP_004595969.1| - 0.0011 19.1 0.0 0.0019 18.4 0.0 1.3 1 0 0 1 1 1 1 Serine acetyltransferase, N-terminal Metallophos_2 PF12850.2 gi|336252863|ref|YP_004595970.1| - 9.7e-33 113.2 0.0 1.2e-32 112.9 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|336252863|ref|YP_004595970.1| - 4.2e-11 42.6 0.0 5.9e-11 42.1 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.1 gi|336252863|ref|YP_004595970.1| - 0.067 12.3 0.0 0.33 10.0 0.0 1.9 2 0 0 2 2 2 0 Metallophosphoesterase, calcineurin superfamily Sigma_reg_N PF13800.1 gi|336252864|ref|YP_004595971.1| - 0.74 9.8 2.8 0.65 10.0 1.2 1.5 1 1 0 1 1 1 0 Sigma factor regulator N-terminal IMP_cyclohyd PF07826.6 gi|336252865|ref|YP_004595972.1| - 3.1e-63 212.7 0.1 3.6e-63 212.5 0.1 1.0 1 0 0 1 1 1 1 IMP cyclohydrolase-like protein HNH PF01844.18 gi|336252866|ref|YP_004595973.1| - 0.0048 16.7 22.1 0.12 12.3 3.8 3.7 2 2 0 2 2 2 2 HNH endonuclease DUF968 PF06147.6 gi|336252866|ref|YP_004595973.1| - 0.0084 16.0 3.6 0.015 15.2 2.5 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF968) Chlam_OMP3 PF03503.8 gi|336252866|ref|YP_004595973.1| - 1.8 8.8 7.6 17 5.7 2.3 2.8 2 1 0 2 2 2 0 Chlamydia cysteine-rich outer membrane protein 3 NinF PF05810.7 gi|336252866|ref|YP_004595973.1| - 2 8.2 7.1 4.3 7.1 0.2 2.8 3 0 0 3 3 3 0 NinF protein Cytochrome_C554 PF13435.1 gi|336252866|ref|YP_004595973.1| - 3.7 7.6 19.9 8.2 6.4 13.0 2.0 1 1 1 2 2 2 0 Cytochrome c554 and c-prime Rhodanese PF00581.15 gi|336252867|ref|YP_004595974.1| - 7.8e-09 35.8 0.1 1.4e-08 35.0 0.0 1.4 1 0 0 1 1 1 1 Rhodanese-like domain TAT_signal PF10518.4 gi|336252867|ref|YP_004595974.1| - 0.015 15.2 2.1 0.029 14.3 1.4 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Oxidored_FMN PF00724.15 gi|336252868|ref|YP_004595975.1| - 1.8e-42 145.5 0.0 1.8e-35 122.5 0.0 2.0 2 0 0 2 2 2 2 NADH:flavin oxidoreductase / NADH oxidase family Dus PF01207.12 gi|336252868|ref|YP_004595975.1| - 0.0012 17.7 0.0 0.0031 16.3 0.0 1.6 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) NMO PF03060.10 gi|336252868|ref|YP_004595975.1| - 0.01 15.0 0.0 0.019 14.1 0.0 1.4 1 0 0 1 1 1 0 Nitronate monooxygenase His_biosynth PF00977.16 gi|336252868|ref|YP_004595975.1| - 0.016 14.5 0.0 0.034 13.4 0.0 1.5 1 0 0 1 1 1 0 Histidine biosynthesis protein TerY-C PF15616.1 gi|336252869|ref|YP_004595976.1| - 0.028 14.3 0.2 0.033 14.1 0.1 1.1 1 0 0 1 1 1 0 TerY-C metal binding domain Zn_Tnp_IS1595 PF12760.2 gi|336252869|ref|YP_004595976.1| - 0.094 12.5 0.3 2 8.2 0.0 2.1 2 0 0 2 2 2 0 Transposase zinc-ribbon domain ADH_N PF08240.7 gi|336252870|ref|YP_004595977.1| - 1.5e-28 98.7 1.2 2.5e-28 98.0 0.2 1.8 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|336252870|ref|YP_004595977.1| - 3.3e-23 81.6 0.4 4.9e-23 81.0 0.3 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|336252870|ref|YP_004595977.1| - 3.4e-07 31.1 1.9 6.2e-07 30.3 1.3 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase TP_methylase PF00590.15 gi|336252870|ref|YP_004595977.1| - 0.0054 16.4 0.5 0.018 14.7 0.2 1.9 2 0 0 2 2 2 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Methyltransf_26 PF13659.1 gi|336252870|ref|YP_004595977.1| - 0.016 15.2 0.9 0.031 14.3 0.6 1.6 1 1 0 1 1 1 0 Methyltransferase domain MTS PF05175.9 gi|336252870|ref|YP_004595977.1| - 0.029 13.7 0.3 0.05 12.9 0.2 1.3 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_18 PF12847.2 gi|336252870|ref|YP_004595977.1| - 0.033 14.7 0.3 0.056 14.0 0.2 1.5 1 0 0 1 1 1 0 Methyltransferase domain NADH_4Fe-4S PF10589.4 gi|336252870|ref|YP_004595977.1| - 0.32 10.1 3.1 0.97 8.6 2.2 1.8 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Amidohydro_2 PF04909.9 gi|336252871|ref|YP_004595978.1| - 2.7e-37 128.8 3.5 3.3e-37 128.5 2.4 1.1 1 0 0 1 1 1 1 Amidohydrolase DUF59 PF01883.14 gi|336252872|ref|YP_004595979.1| - 3e-15 55.9 0.1 9e-15 54.4 0.1 1.9 1 0 0 1 1 1 1 Domain of unknown function DUF59 LEA_2 PF03168.8 gi|336252873|ref|YP_004595980.1| - 4.1e-13 49.5 0.0 6e-07 29.7 0.0 2.7 2 1 0 2 2 2 2 Late embryogenesis abundant protein DUF3426 PF11906.3 gi|336252873|ref|YP_004595980.1| - 0.038 13.6 0.0 0.079 12.6 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3426) CGI-121 PF08617.5 gi|336252874|ref|YP_004595981.1| - 3.5e-17 62.5 0.0 4e-17 62.3 0.0 1.0 1 0 0 1 1 1 1 Kinase binding protein CGI-121 Imm1 PF14430.1 gi|336252874|ref|YP_004595981.1| - 0.009 16.1 2.0 0.44 10.6 0.1 2.3 1 1 1 2 2 2 2 Immunity protein Imm1 DEAD PF00270.24 gi|336252875|ref|YP_004595982.1| - 5.4e-26 91.0 0.0 1e-25 90.1 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase HHH_5 PF14520.1 gi|336252875|ref|YP_004595982.1| - 5.7e-08 32.8 0.4 5.7e-08 32.8 0.3 3.2 3 0 0 3 3 3 1 Helix-hairpin-helix domain Helicase_C PF00271.26 gi|336252875|ref|YP_004595982.1| - 8.3e-07 28.7 0.0 1.7e-06 27.8 0.0 1.5 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|336252875|ref|YP_004595982.1| - 4.9e-06 26.5 0.0 1.9e-05 24.6 0.0 1.9 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit DNA_pol_lambd_f PF10391.4 gi|336252875|ref|YP_004595982.1| - 0.0002 20.8 0.0 0.00056 19.4 0.0 1.8 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda HHH PF00633.18 gi|336252875|ref|YP_004595982.1| - 0.034 13.8 0.0 1.7 8.4 0.0 3.1 2 0 0 2 2 2 0 Helix-hairpin-helix motif FCD PF07729.7 gi|336252875|ref|YP_004595982.1| - 0.38 11.1 6.6 0.28 11.5 0.5 2.9 3 0 0 3 3 3 0 FCD domain MgtE PF01769.11 gi|336252876|ref|YP_004595983.1| - 5.5e-19 68.8 10.5 8.5e-19 68.1 7.3 1.3 1 0 0 1 1 1 1 Divalent cation transporter MgtE_N PF03448.12 gi|336252876|ref|YP_004595983.1| - 2e-14 53.7 2.3 2e-14 53.7 1.6 2.2 3 0 0 3 3 3 1 MgtE intracellular N domain CBS PF00571.23 gi|336252876|ref|YP_004595983.1| - 1.4e-08 34.3 5.5 6e-06 25.9 0.6 2.8 3 0 0 3 3 3 2 CBS domain CDC37_C PF08564.5 gi|336252876|ref|YP_004595983.1| - 0.02 14.7 0.0 0.043 13.6 0.0 1.6 1 0 0 1 1 1 0 Cdc37 C terminal domain FliG_M PF14841.1 gi|336252876|ref|YP_004595983.1| - 0.11 12.5 0.1 0.36 10.8 0.0 1.9 2 0 0 2 2 2 0 FliG middle domain PHO4 PF01384.15 gi|336252877|ref|YP_004595984.1| - 1.8e-12 46.5 8.3 1.8e-12 46.5 5.8 1.3 2 0 0 2 2 2 1 Phosphate transporter family DUF4401 PF14351.1 gi|336252877|ref|YP_004595984.1| - 0.46 9.4 8.7 0.59 9.0 6.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4401) Alk_phosphatase PF00245.15 gi|336252878|ref|YP_004595985.1| - 3.2e-76 256.6 4.8 5.4e-76 255.9 3.3 1.4 1 0 0 1 1 1 1 Alkaline phosphatase Phosphodiest PF01663.17 gi|336252878|ref|YP_004595985.1| - 0.0048 16.2 1.7 0.019 14.3 1.1 1.9 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Metalloenzyme PF01676.13 gi|336252878|ref|YP_004595985.1| - 0.02 14.3 0.2 0.02 14.3 0.1 1.5 2 0 0 2 2 2 0 Metalloenzyme superfamily Fer4_15 PF13459.1 gi|336252879|ref|YP_004595986.1| - 3.7e-16 59.4 3.6 4.5e-16 59.1 2.5 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|336252879|ref|YP_004595986.1| - 5e-05 23.6 1.6 0.0001 22.5 1.1 1.5 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_19 PF06902.6 gi|336252879|ref|YP_004595986.1| - 0.01 15.6 0.3 0.19 11.5 0.2 2.1 1 1 0 1 1 1 0 Divergent 4Fe-4S mono-cluster Fer4 PF00037.22 gi|336252879|ref|YP_004595986.1| - 0.035 13.7 1.6 2.7 7.7 0.1 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_6 PF12837.2 gi|336252879|ref|YP_004595986.1| - 0.07 13.0 1.2 2.2 8.3 0.1 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_10 PF13237.1 gi|336252879|ref|YP_004595986.1| - 0.14 11.9 0.1 0.39 10.5 0.1 1.8 1 1 1 2 2 2 0 4Fe-4S dicluster domain Ldh_1_N PF00056.18 gi|336252880|ref|YP_004595987.1| - 5.1e-40 136.5 0.4 7.4e-40 136.0 0.3 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.13 gi|336252880|ref|YP_004595987.1| - 2.8e-34 118.3 0.0 4.1e-34 117.8 0.0 1.3 1 0 0 1 1 1 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain Lysine_decarbox PF03641.9 gi|336252881|ref|YP_004595988.1| - 2.8e-08 33.6 0.1 5.4e-08 32.7 0.1 1.5 1 0 0 1 1 1 1 Possible lysine decarboxylase DNA_processg_A PF02481.10 gi|336252881|ref|YP_004595988.1| - 0.00066 18.6 5.0 0.00096 18.1 3.5 1.2 1 0 0 1 1 1 1 DNA recombination-mediator protein A DAGK_cat PF00781.19 gi|336252881|ref|YP_004595988.1| - 1.2 8.5 4.3 1 8.8 0.7 2.1 1 1 1 2 2 2 0 Diacylglycerol kinase catalytic domain Acetyltransf_7 PF13508.1 gi|336252882|ref|YP_004595989.1| - 3.7e-13 49.4 0.0 7.3e-13 48.4 0.0 1.5 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|336252882|ref|YP_004595989.1| - 3.6e-12 46.1 0.0 5.4e-12 45.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_9 PF13527.1 gi|336252882|ref|YP_004595989.1| - 5.3e-08 32.7 0.1 9.8e-08 31.9 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|336252882|ref|YP_004595989.1| - 5.3e-07 29.7 0.0 6.5e-07 29.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|336252882|ref|YP_004595989.1| - 0.00024 20.7 0.0 0.00054 19.6 0.0 1.6 1 1 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.1 gi|336252882|ref|YP_004595989.1| - 0.00061 19.9 0.0 0.00071 19.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain GNAT_acetyltr_2 PF13718.1 gi|336252882|ref|YP_004595989.1| - 0.028 13.7 0.0 0.038 13.3 0.0 1.2 1 0 0 1 1 1 0 GNAT acetyltransferase 2 Acetyltransf_CG PF14542.1 gi|336252882|ref|YP_004595989.1| - 0.074 12.9 0.1 0.11 12.4 0.1 1.2 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Auto_anti-p27 PF06677.7 gi|336252883|ref|YP_004595990.1| - 1.6e-17 62.9 1.7 2.3e-17 62.4 1.2 1.2 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DZR PF12773.2 gi|336252883|ref|YP_004595990.1| - 0.0049 16.6 1.3 0.012 15.3 0.9 1.6 1 0 0 1 1 1 1 Double zinc ribbon Prok-RING_1 PF14446.1 gi|336252883|ref|YP_004595990.1| - 0.0058 16.3 0.6 0.0099 15.5 0.4 1.4 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 GFA PF04828.9 gi|336252883|ref|YP_004595990.1| - 0.14 12.1 2.0 0.22 11.4 0.0 2.1 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme RRN7 PF11781.3 gi|336252883|ref|YP_004595990.1| - 0.3 10.6 2.4 0.72 9.4 1.7 1.6 1 1 0 1 1 1 0 RNA polymerase I-specific transcription initiation factor Rrn7 Ndc1_Nup PF09531.5 gi|336252883|ref|YP_004595990.1| - 2.2 6.5 3.6 2.9 6.1 2.5 1.1 1 0 0 1 1 1 0 Nucleoporin protein Ndc1-Nup SPX PF03105.14 gi|336252883|ref|YP_004595990.1| - 3.9 7.1 7.2 7.1 6.3 5.0 1.7 1 1 0 1 1 1 0 SPX domain Cu-oxidase_2 PF07731.9 gi|336252884|ref|YP_004595991.1| - 6.2e-31 106.7 12.2 1.1e-19 70.2 1.0 3.1 2 1 0 2 2 2 2 Multicopper oxidase Cu-oxidase_3 PF07732.10 gi|336252884|ref|YP_004595991.1| - 2.9e-22 78.6 8.6 1.3e-18 66.8 1.6 2.6 2 1 0 2 2 2 2 Multicopper oxidase Cu-oxidase PF00394.17 gi|336252884|ref|YP_004595991.1| - 8.9e-14 51.6 0.1 2.3e-13 50.3 0.0 1.7 2 0 0 2 2 2 1 Multicopper oxidase Cupredoxin_1 PF13473.1 gi|336252884|ref|YP_004595991.1| - 0.00028 20.7 0.0 0.2 11.5 0.0 2.8 2 1 0 2 2 2 2 Cupredoxin-like domain TAT_signal PF10518.4 gi|336252884|ref|YP_004595991.1| - 0.019 14.9 2.0 0.034 14.1 1.4 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence ERCC4 PF02732.10 gi|336252885|ref|YP_004595992.1| - 4.3e-26 91.3 0.0 1e-25 90.1 0.0 1.7 1 0 0 1 1 1 1 ERCC4 domain Helicase_C PF00271.26 gi|336252885|ref|YP_004595992.1| - 7.2e-19 67.4 0.0 1.9e-18 66.1 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|336252885|ref|YP_004595992.1| - 6.5e-17 61.5 0.0 2e-16 59.9 0.0 1.8 1 0 0 1 1 1 1 DEAD/DEAH box helicase ResIII PF04851.10 gi|336252885|ref|YP_004595992.1| - 3.8e-13 49.6 0.0 1.6e-12 47.6 0.0 2.1 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HHH_2 PF12826.2 gi|336252885|ref|YP_004595992.1| - 1.9e-08 34.0 1.3 5.3e-08 32.6 0.2 2.3 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|336252885|ref|YP_004595992.1| - 7.4e-07 29.2 0.1 7.4e-07 29.2 0.1 3.1 4 0 0 4 4 4 1 Helix-hairpin-helix domain HHH PF00633.18 gi|336252885|ref|YP_004595992.1| - 1.5e-05 24.3 0.5 0.0023 17.5 0.1 2.9 2 0 0 2 2 2 1 Helix-hairpin-helix motif SNARE PF05739.14 gi|336252885|ref|YP_004595992.1| - 0.0024 17.4 0.8 0.0099 15.5 0.5 2.0 1 0 0 1 1 1 1 SNARE domain Helicase_C_2 PF13307.1 gi|336252885|ref|YP_004595992.1| - 0.0073 16.2 0.3 0.045 13.6 0.0 2.4 2 0 0 2 2 2 1 Helicase C-terminal domain End3 PF12761.2 gi|336252885|ref|YP_004595992.1| - 0.016 14.8 3.7 0.044 13.4 2.5 1.7 1 0 0 1 1 1 0 Actin cytoskeleton-regulatory complex protein END3 5_3_exonuc PF01367.15 gi|336252885|ref|YP_004595992.1| - 0.036 14.2 0.0 0.15 12.2 0.0 2.1 1 0 0 1 1 1 0 5'-3' exonuclease, C-terminal SAM fold Metallophos PF00149.23 gi|336252887|ref|YP_004595994.1| - 8.9e-11 41.5 0.0 1.7e-10 40.6 0.0 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|336252887|ref|YP_004595994.1| - 1.2e-07 31.6 0.0 2.1e-07 30.9 0.0 1.3 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.1 gi|336252887|ref|YP_004595994.1| - 0.14 11.2 0.0 0.19 10.8 0.0 1.2 1 0 0 1 1 1 0 Metallophosphoesterase, calcineurin superfamily PP_kinase_C PF13090.1 gi|336252888|ref|YP_004595995.1| - 1.8e-152 507.0 0.0 2.6e-152 506.5 0.0 1.2 1 0 0 1 1 1 1 Polyphosphate kinase C-terminal domain PP_kinase PF02503.12 gi|336252888|ref|YP_004595995.1| - 3.7e-65 219.3 3.8 3.7e-65 219.3 2.7 1.7 2 0 0 2 2 2 1 Polyphosphate kinase middle domain PP_kinase_N PF13089.1 gi|336252888|ref|YP_004595995.1| - 3.2e-37 126.9 0.0 9.6e-37 125.4 0.0 1.9 1 0 0 1 1 1 1 Polyphosphate kinase N-terminal domain PLDc_2 PF13091.1 gi|336252888|ref|YP_004595995.1| - 9.7e-13 47.9 0.0 3.1e-06 26.9 0.0 2.4 2 0 0 2 2 2 2 PLD-like domain DUF2547 PF10818.3 gi|336252889|ref|YP_004595996.1| - 1.9 9.1 6.0 15 6.2 0.4 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2547) Glyco_trans_2_3 PF13632.1 gi|336252890|ref|YP_004595997.1| - 6.8e-13 48.7 1.6 6.8e-13 48.7 1.1 2.4 2 0 0 2 2 2 1 Glycosyl transferase family group 2 Glyco_tranf_2_3 PF13641.1 gi|336252890|ref|YP_004595997.1| - 5.4e-09 36.1 4.8 2e-08 34.3 3.4 1.8 1 1 0 1 1 1 1 Glycosyltransferase like family 2 tRNA-synt_2b PF00587.20 gi|336252892|ref|YP_004595999.1| - 1.2e-53 181.2 0.0 2e-53 180.4 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|336252892|ref|YP_004595999.1| - 4e-23 81.1 0.1 8.8e-23 80.0 0.1 1.6 1 0 0 1 1 1 1 Anticodon binding domain zf-ribbon_3 PF13248.1 gi|336252892|ref|YP_004595999.1| - 0.0011 18.0 2.3 0.0011 18.0 1.6 2.2 2 1 1 3 3 3 2 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|336252892|ref|YP_004595999.1| - 0.025 14.0 0.5 8.6 5.9 0.1 2.6 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|336252892|ref|YP_004595999.1| - 0.027 14.4 0.2 3.5 7.6 0.0 2.5 2 0 0 2 2 2 0 Zinc ribbon domain Lar_restr_allev PF14354.1 gi|336252892|ref|YP_004595999.1| - 0.058 13.7 1.7 0.56 10.5 1.3 2.4 1 1 1 2 2 2 0 Restriction alleviation protein Lar Ribosomal_L32p PF01783.18 gi|336252892|ref|YP_004595999.1| - 0.066 13.4 0.0 0.52 10.5 0.0 2.4 3 0 0 3 3 3 0 Ribosomal L32p protein family TF_Zn_Ribbon PF08271.7 gi|336252892|ref|YP_004595999.1| - 0.11 11.8 2.7 2.8 7.3 1.9 2.6 1 1 0 1 1 1 0 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.6 gi|336252892|ref|YP_004595999.1| - 0.18 11.4 0.2 12 5.6 0.1 2.4 2 0 0 2 2 2 0 Putative transposase DNA-binding domain zf-NADH-PPase PF09297.6 gi|336252892|ref|YP_004595999.1| - 0.34 10.4 2.4 1.1 8.7 0.0 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain CBS PF00571.23 gi|336252893|ref|YP_004596000.1| - 9.8e-35 118.0 7.8 5.1e-11 42.1 0.1 4.1 4 0 0 4 4 4 4 CBS domain DoxX PF07681.7 gi|336252895|ref|YP_004596002.1| - 1.4e-13 51.0 14.8 3e-13 49.9 7.3 2.2 2 0 0 2 2 2 1 DoxX HR_lesion PF05514.6 gi|336252895|ref|YP_004596002.1| - 2.3e-06 27.4 0.3 6.8e-06 25.9 0.2 1.8 1 1 0 1 1 1 1 HR-like lesion-inducing DUF11 PF01345.13 gi|336252896|ref|YP_004596003.1| - 0.048 13.7 0.1 0.11 12.6 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function DUF11 Big_4 PF07532.6 gi|336252896|ref|YP_004596003.1| - 0.15 11.5 0.4 0.98 8.9 0.0 2.1 2 0 0 2 2 2 0 Bacterial Ig-like domain (group 4) ABC_tran PF00005.22 gi|336252898|ref|YP_004596005.1| - 2.1e-32 112.2 0.0 3.3e-32 111.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|336252898|ref|YP_004596005.1| - 7.7e-19 67.8 0.3 1.9e-18 66.5 0.2 1.7 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region SMC_N PF02463.14 gi|336252898|ref|YP_004596005.1| - 2e-06 27.1 0.0 3e-06 26.6 0.0 1.1 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|336252898|ref|YP_004596005.1| - 9.2e-05 22.5 0.0 0.25 11.2 0.0 2.2 1 1 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|336252898|ref|YP_004596005.1| - 0.00096 18.6 0.0 0.0019 17.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|336252898|ref|YP_004596005.1| - 0.0048 16.9 0.3 0.011 15.6 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|336252898|ref|YP_004596005.1| - 0.014 15.5 0.2 0.099 12.7 0.2 2.2 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|336252898|ref|YP_004596005.1| - 0.015 14.4 0.0 0.025 13.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 PRK PF00485.13 gi|336252898|ref|YP_004596005.1| - 0.015 14.8 0.0 0.026 14.1 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA PF00004.24 gi|336252898|ref|YP_004596005.1| - 0.016 15.3 0.0 0.07 13.3 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|336252898|ref|YP_004596005.1| - 0.085 12.5 0.1 0.16 11.6 0.1 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) ATP-synt_ab PF00006.20 gi|336252898|ref|YP_004596005.1| - 0.096 12.1 0.0 0.1 12.1 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_18 PF13238.1 gi|336252898|ref|YP_004596005.1| - 0.16 12.3 0.0 0.37 11.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|336252899|ref|YP_004596006.1| - 1.8e-26 93.0 0.0 2.9e-26 92.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|336252899|ref|YP_004596006.1| - 1.4e-20 73.3 0.8 2.8e-20 72.4 0.6 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|336252899|ref|YP_004596006.1| - 2.1e-07 31.2 0.0 9.7e-07 29.0 0.0 1.9 1 1 0 1 1 1 1 AAA domain ATP-synt_ab PF00006.20 gi|336252899|ref|YP_004596006.1| - 0.02 14.3 0.0 0.022 14.2 0.0 1.1 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain DUF258 PF03193.11 gi|336252899|ref|YP_004596006.1| - 0.041 13.0 0.0 0.071 12.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_5 PF07728.9 gi|336252899|ref|YP_004596006.1| - 0.05 13.3 0.0 0.091 12.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_10 PF12846.2 gi|336252899|ref|YP_004596006.1| - 0.099 12.0 0.1 0.17 11.2 0.1 1.5 1 1 0 1 1 1 0 AAA-like domain AAA_25 PF13481.1 gi|336252899|ref|YP_004596006.1| - 0.13 11.6 0.1 1 8.7 0.0 2.2 2 1 0 2 2 2 0 AAA domain BPD_transp_1 PF00528.17 gi|336252900|ref|YP_004596007.1| - 2.7e-32 111.7 11.6 3.7e-32 111.3 5.9 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|336252901|ref|YP_004596008.1| - 1e-41 142.5 9.0 1e-41 142.5 6.2 1.9 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Renin_r PF07850.9 gi|336252901|ref|YP_004596008.1| - 4 7.8 6.5 3.6 7.9 2.0 2.3 2 0 0 2 2 2 0 Renin receptor-like protein SBP_bac_5 PF00496.17 gi|336252902|ref|YP_004596009.1| - 2.7e-71 240.3 4.3 3.3e-71 240.0 3.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.4 gi|336252902|ref|YP_004596009.1| - 0.036 14.0 4.4 0.078 13.0 3.1 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF296 PF03479.10 gi|336252903|ref|YP_004596010.1| - 3.1e-22 78.4 0.0 3.5e-22 78.2 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF296) PolC_DP2 PF03833.8 gi|336252904|ref|YP_004596011.1| - 0 1292.1 12.0 6e-245 815.0 1.5 2.5 3 0 0 3 3 3 2 DNA polymerase II large subunit DP2 zinc-ribbons_6 PF07191.7 gi|336252904|ref|YP_004596011.1| - 0.42 10.4 16.6 1.8 8.4 7.3 2.9 2 1 0 2 2 2 0 zinc-ribbons DZR PF12773.2 gi|336252904|ref|YP_004596011.1| - 1.2 9.0 19.5 6.8 6.6 8.4 2.9 2 1 0 2 2 2 0 Double zinc ribbon HypA PF01155.14 gi|336252904|ref|YP_004596011.1| - 2.6 7.7 19.0 1.7 8.3 0.4 3.5 2 1 1 3 3 3 0 Hydrogenase expression/synthesis hypA family Nop14 PF04147.7 gi|336252904|ref|YP_004596011.1| - 3.2 5.5 5.7 5 4.9 3.9 1.2 1 0 0 1 1 1 0 Nop14-like family Fn3-like PF14310.1 gi|336252905|ref|YP_004596012.1| - 0.28 11.1 2.0 4.8 7.2 0.0 3.6 2 2 1 3 3 3 0 Fibronectin type III-like domain Big_1 PF02369.11 gi|336252905|ref|YP_004596012.1| - 5.1 7.0 10.4 3.2 7.7 0.4 3.9 2 1 0 3 3 3 0 Bacterial Ig-like domain (group 1) HypA PF01155.14 gi|336252906|ref|YP_004596013.1| - 0.0011 18.6 0.1 0.0017 18.0 0.0 1.4 2 0 0 2 2 2 1 Hydrogenase expression/synthesis hypA family zf-ribbon_3 PF13248.1 gi|336252906|ref|YP_004596013.1| - 0.0061 15.7 0.4 0.19 10.9 0.1 2.3 2 0 0 2 2 2 1 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|336252906|ref|YP_004596013.1| - 0.0079 16.1 0.7 0.016 15.1 0.5 1.5 1 0 0 1 1 1 1 Zinc ribbon domain Rubredoxin PF00301.15 gi|336252906|ref|YP_004596013.1| - 0.014 15.2 0.8 4.8 7.1 0.3 2.5 1 1 1 2 2 2 0 Rubredoxin zinc_ribbon_2 PF13240.1 gi|336252906|ref|YP_004596013.1| - 0.029 13.8 2.6 0.36 10.3 0.6 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|336252906|ref|YP_004596013.1| - 0.042 13.3 1.4 0.069 12.6 1.0 1.3 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_5 PF13719.1 gi|336252906|ref|YP_004596013.1| - 0.11 12.1 0.3 4.6 6.8 0.3 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|336252906|ref|YP_004596013.1| - 0.14 12.0 1.7 0.55 10.0 1.2 1.7 1 1 0 1 1 1 0 Double zinc ribbon zf-ISL3 PF14690.1 gi|336252906|ref|YP_004596013.1| - 0.17 11.9 0.6 3.9 7.5 0.1 2.2 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Prim_Zn_Ribbon PF08273.7 gi|336252906|ref|YP_004596013.1| - 1.3 9.1 4.3 2.8 8.0 0.1 2.5 3 0 0 3 3 3 0 Zinc-binding domain of primase-helicase HypA PF01155.14 gi|336252907|ref|YP_004596014.1| - 9.5e-05 22.0 0.1 0.00014 21.5 0.0 1.3 1 1 0 1 1 1 1 Hydrogenase expression/synthesis hypA family Rubredoxin PF00301.15 gi|336252907|ref|YP_004596014.1| - 0.0027 17.5 2.7 0.57 10.0 0.4 2.3 1 1 1 2 2 2 2 Rubredoxin Zn-ribbon_8 PF09723.5 gi|336252907|ref|YP_004596014.1| - 0.006 16.5 0.7 0.011 15.7 0.5 1.4 1 0 0 1 1 1 1 Zinc ribbon domain zf-ribbon_3 PF13248.1 gi|336252907|ref|YP_004596014.1| - 0.008 15.3 3.7 0.24 10.6 0.9 2.3 1 1 1 2 2 2 2 zinc-ribbon domain PRC PF05239.11 gi|336252907|ref|YP_004596014.1| - 0.017 14.9 0.1 0.023 14.5 0.1 1.3 1 0 0 1 1 1 0 PRC-barrel domain zinc_ribbon_2 PF13240.1 gi|336252907|ref|YP_004596014.1| - 0.028 13.9 3.7 0.14 11.7 0.5 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|336252907|ref|YP_004596014.1| - 0.05 13.4 1.0 0.096 12.5 0.7 1.5 1 1 0 1 1 1 0 Double zinc ribbon DnaJ_CXXCXGXG PF00684.14 gi|336252907|ref|YP_004596014.1| - 0.092 12.8 0.3 0.13 12.3 0.2 1.2 1 0 0 1 1 1 0 DnaJ central domain Gar1 PF04410.9 gi|336252907|ref|YP_004596014.1| - 0.11 11.8 0.0 0.15 11.5 0.0 1.2 1 0 0 1 1 1 0 Gar1/Naf1 RNA binding region zf-CCHC PF00098.18 gi|336252907|ref|YP_004596014.1| - 0.12 12.3 5.4 1.9 8.5 0.9 2.3 2 0 0 2 2 2 0 Zinc knuckle BPL_C PF02237.12 gi|336252907|ref|YP_004596014.1| - 0.37 10.5 1.9 0.55 9.9 1.3 1.4 1 1 0 1 1 1 0 Biotin protein ligase C terminal domain ApbA_C PF08546.6 gi|336252908|ref|YP_004596015.1| - 2.4e-35 121.2 1.4 3.6e-35 120.6 1.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA C terminal ApbA PF02558.11 gi|336252908|ref|YP_004596015.1| - 9e-31 106.3 0.1 1.5e-30 105.6 0.1 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Orexin PF02072.10 gi|336252908|ref|YP_004596015.1| - 0.031 14.0 0.5 0.062 13.1 0.4 1.5 1 0 0 1 1 1 0 Prepro-orexin NifU PF01106.12 gi|336252909|ref|YP_004596016.1| - 1.4e-10 40.8 0.2 2.1e-10 40.2 0.1 1.5 1 1 0 1 1 1 1 NifU-like domain DUF2891 PF11199.3 gi|336252910|ref|YP_004596017.1| - 0.061 11.9 0.2 3.7 6.0 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2891) EST1 PF10374.4 gi|336252910|ref|YP_004596017.1| - 0.12 12.3 0.0 0.13 12.2 0.0 1.1 1 0 0 1 1 1 0 Telomerase activating protein Est1 OmpH PF03938.9 gi|336252912|ref|YP_004596019.1| - 0.041 13.8 2.1 0.069 13.0 1.5 1.3 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) Acyl-CoA_dh_C PF12806.2 gi|336252912|ref|YP_004596019.1| - 0.098 12.5 4.0 0.64 9.8 0.4 2.8 2 1 1 3 3 3 0 Acetyl-CoA dehydrogenase C-terminal like Apolipoprotein PF01442.13 gi|336252912|ref|YP_004596019.1| - 0.18 11.3 9.0 0.093 12.2 4.2 1.9 2 1 0 2 2 2 0 Apolipoprotein A1/A4/E domain Nsp1_C PF05064.8 gi|336252912|ref|YP_004596019.1| - 0.24 11.0 1.7 19 4.9 0.0 3.0 2 1 1 3 3 3 0 Nsp1-like C-terminal region DUF4164 PF13747.1 gi|336252912|ref|YP_004596019.1| - 1.2 9.2 11.9 8 6.6 0.0 3.5 4 1 0 4 4 4 0 Domain of unknown function (DUF4164) CENP-F_leu_zip PF10473.4 gi|336252912|ref|YP_004596019.1| - 1.9 8.3 8.7 3.2 7.6 4.9 2.1 2 1 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF2580 PF10824.3 gi|336252912|ref|YP_004596019.1| - 5.2 7.4 10.9 0.22 11.8 1.6 2.8 3 1 1 4 4 4 0 Protein of unknown function (DUF2580) Acetyltransf_8 PF13523.1 gi|336252913|ref|YP_004596020.1| - 0.066 13.0 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain PHP_C PF13263.1 gi|336252914|ref|YP_004596021.1| - 4.8e-22 77.2 0.2 3.6e-21 74.4 0.1 2.2 2 0 0 2 2 2 1 PHP-associated PHP PF02811.14 gi|336252914|ref|YP_004596021.1| - 1.3e-14 54.3 0.1 2.9e-13 49.9 0.1 2.4 1 1 0 1 1 1 1 PHP domain DHHA1 PF02272.14 gi|336252915|ref|YP_004596022.1| - 1.1e-12 47.4 1.4 2.4e-12 46.3 1.0 1.7 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.15 gi|336252915|ref|YP_004596022.1| - 1.2e-11 44.4 0.0 1.7e-11 43.9 0.0 1.3 1 0 0 1 1 1 1 DHH family HEM4 PF02602.10 gi|336252916|ref|YP_004596023.1| - 1e-44 152.5 3.5 1.2e-44 152.2 2.4 1.0 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD TP_methylase PF00590.15 gi|336252917|ref|YP_004596024.1| - 5.5e-53 179.7 0.3 6.8e-53 179.4 0.2 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Porphobil_deam PF01379.15 gi|336252918|ref|YP_004596025.1| - 1.3e-62 210.5 0.2 1.3e-51 174.5 0.0 2.1 2 0 0 2 2 2 2 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.10 gi|336252918|ref|YP_004596025.1| - 1.6e-08 34.5 0.1 3.6e-08 33.3 0.1 1.6 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain Bac_globin PF01152.16 gi|336252919|ref|YP_004596026.1| - 7.8e-30 103.3 0.2 8.5e-30 103.2 0.1 1.0 1 0 0 1 1 1 1 Bacterial-like globin Protoglobin PF11563.3 gi|336252919|ref|YP_004596026.1| - 2.4e-05 24.0 0.4 6.5e-05 22.6 0.2 1.9 1 1 0 1 1 1 1 Protoglobin COX1 PF00115.15 gi|336252920|ref|YP_004596027.1| - 1.4e-46 159.0 44.7 3.4e-46 157.7 31.0 1.6 1 0 0 1 1 1 1 Cytochrome C and Quinol oxidase polypeptide I HATPase_c PF02518.21 gi|336252921|ref|YP_004596028.1| - 1e-18 67.0 0.0 1.9e-18 66.1 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|336252921|ref|YP_004596028.1| - 3.8e-08 33.1 0.0 1e-07 31.7 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HisKA PF00512.20 gi|336252921|ref|YP_004596028.1| - 9.2e-07 28.7 1.0 1.8e-06 27.8 0.2 1.9 1 1 1 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.1 gi|336252921|ref|YP_004596028.1| - 0.0003 20.4 0.0 0.00049 19.7 0.0 1.3 1 0 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.1 gi|336252921|ref|YP_004596028.1| - 0.009 15.6 0.0 0.016 14.8 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPOB_a PF14689.1 gi|336252921|ref|YP_004596028.1| - 0.045 13.3 0.2 0.088 12.3 0.1 1.4 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain Aminotran_3 PF00202.16 gi|336252922|ref|YP_004596029.1| - 2.9e-68 230.2 0.0 3.8e-68 229.8 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.16 gi|336252922|ref|YP_004596029.1| - 0.024 13.5 0.0 0.037 12.9 0.0 1.2 1 0 0 1 1 1 0 Aminotransferase class I and II Ammonium_transp PF00909.16 gi|336252923|ref|YP_004596030.1| - 9.1e-95 317.4 38.0 1.1e-94 317.2 26.3 1.0 1 0 0 1 1 1 1 Ammonium Transporter Family P-II PF00543.17 gi|336252923|ref|YP_004596030.1| - 4.3e-34 117.0 0.8 7.6e-34 116.2 0.0 1.8 2 0 0 2 2 2 1 Nitrogen regulatory protein P-II PsbY PF06298.6 gi|336252923|ref|YP_004596030.1| - 0.16 11.5 4.5 0.96 9.0 0.1 2.7 2 0 0 2 2 2 0 Photosystem II protein Y (PsbY) ALAD PF00490.16 gi|336252924|ref|YP_004596031.1| - 3.1e-139 463.3 0.0 3.6e-139 463.1 0.0 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase TrmB PF01978.14 gi|336252926|ref|YP_004596033.1| - 4.2e-21 74.4 0.4 1.1e-20 73.1 0.0 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Regulator_TrmB PF11495.3 gi|336252926|ref|YP_004596033.1| - 6.4e-05 22.0 0.2 9.5e-05 21.4 0.2 1.2 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB HTH_27 PF13463.1 gi|336252926|ref|YP_004596033.1| - 0.00028 21.1 0.8 0.065 13.5 0.0 3.2 2 1 1 3 3 3 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|336252926|ref|YP_004596033.1| - 0.00062 19.3 0.4 0.0021 17.6 0.2 2.0 1 1 1 2 2 2 1 MarR family Fe_dep_repress PF01325.14 gi|336252926|ref|YP_004596033.1| - 0.00064 19.6 0.0 0.05 13.5 0.0 2.3 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_IclR PF09339.5 gi|336252926|ref|YP_004596033.1| - 0.0025 17.3 0.0 0.18 11.4 0.0 2.5 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|336252926|ref|YP_004596033.1| - 0.018 14.7 0.0 0.053 13.3 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain DUF2250 PF10007.4 gi|336252926|ref|YP_004596033.1| - 0.024 14.5 0.0 0.26 11.2 0.0 2.3 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) Rrf2 PF02082.15 gi|336252926|ref|YP_004596033.1| - 0.048 13.7 0.0 0.098 12.7 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator RuvA_C PF07499.8 gi|336252926|ref|YP_004596033.1| - 0.051 13.7 2.3 3.6 7.8 0.1 3.4 3 0 0 3 3 3 0 RuvA, C-terminal domain LexA_DNA_bind PF01726.11 gi|336252926|ref|YP_004596033.1| - 0.055 13.0 0.0 0.28 10.7 0.0 2.2 3 0 0 3 3 3 0 LexA DNA binding domain PadR PF03551.9 gi|336252926|ref|YP_004596033.1| - 0.063 13.0 0.0 0.13 12.0 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family SKI PF01202.17 gi|336252926|ref|YP_004596033.1| - 0.075 12.8 0.1 0.35 10.7 0.0 2.1 2 1 1 3 3 3 0 Shikimate kinase Acetyltransf_1 PF00583.19 gi|336252927|ref|YP_004596034.1| - 4.4e-15 55.4 0.1 6.4e-15 54.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|336252927|ref|YP_004596034.1| - 4.9e-07 29.8 0.0 7.4e-07 29.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|336252927|ref|YP_004596034.1| - 0.00017 21.7 0.1 0.00023 21.2 0.1 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|336252927|ref|YP_004596034.1| - 0.0015 18.2 0.0 0.0023 17.6 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.1 gi|336252927|ref|YP_004596034.1| - 0.0067 16.2 0.0 0.0079 16.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|336252927|ref|YP_004596034.1| - 0.015 15.2 0.1 0.018 14.9 0.1 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain DUF3749 PF12568.3 gi|336252927|ref|YP_004596034.1| - 0.016 14.8 0.0 0.038 13.5 0.0 1.5 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|336252927|ref|YP_004596034.1| - 0.022 14.6 0.0 0.17 11.8 0.0 1.9 1 1 1 2 2 2 0 GCN5-related N-acetyl-transferase Fer4_7 PF12838.2 gi|336252928|ref|YP_004596035.1| - 1.8e-11 44.2 22.3 1.3e-06 28.7 5.5 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.22 gi|336252928|ref|YP_004596035.1| - 5.6e-11 41.5 13.8 2.6e-07 29.9 3.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|336252928|ref|YP_004596035.1| - 2e-10 40.7 5.5 2.8e-10 40.2 3.8 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|336252928|ref|YP_004596035.1| - 6e-08 32.2 14.1 7.5e-06 25.5 3.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|336252928|ref|YP_004596035.1| - 3.4e-07 29.9 18.7 9.4e-05 22.1 5.6 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|336252928|ref|YP_004596035.1| - 7.5e-07 29.0 9.5 2.4e-05 24.2 4.2 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|336252928|ref|YP_004596035.1| - 1.1e-06 28.3 7.7 2.6e-06 27.1 5.3 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|336252928|ref|YP_004596035.1| - 3.7e-06 27.1 0.7 0.041 14.2 0.3 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|336252928|ref|YP_004596035.1| - 4.2e-06 27.4 5.2 7.7e-05 23.3 0.8 2.4 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|336252928|ref|YP_004596035.1| - 5e-06 26.1 10.6 0.0013 18.5 2.5 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|336252928|ref|YP_004596035.1| - 8.7e-06 26.0 2.9 0.00016 22.0 0.6 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|336252928|ref|YP_004596035.1| - 1.4e-05 25.0 7.2 0.00014 21.8 1.4 2.2 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_3 PF12798.2 gi|336252928|ref|YP_004596035.1| - 0.0018 18.7 12.7 0.0025 18.2 3.6 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_13 PF13370.1 gi|336252928|ref|YP_004596035.1| - 0.01 16.1 13.7 0.1 12.9 9.5 2.5 1 1 0 1 1 1 0 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|336252928|ref|YP_004596035.1| - 0.27 11.8 16.4 8.7 6.9 11.3 2.7 1 1 0 1 1 1 0 4Fe-4S single cluster domain YyzF PF14116.1 gi|336252929|ref|YP_004596036.1| - 9.2 6.3 6.1 2 8.4 0.6 2.2 2 1 0 2 2 2 0 YyzF-like protein PHP PF02811.14 gi|336252930|ref|YP_004596037.1| - 4.2e-09 36.4 0.0 4.7e-09 36.2 0.0 1.2 1 0 0 1 1 1 1 PHP domain PHP_C PF13263.1 gi|336252930|ref|YP_004596037.1| - 0.0044 16.4 0.0 0.011 15.2 0.0 1.6 1 0 0 1 1 1 1 PHP-associated DUF2795 PF11387.3 gi|336252931|ref|YP_004596038.1| - 0.0012 18.6 0.1 0.019 14.7 0.1 2.2 1 1 0 1 1 1 1 Protein of unknown function (DUF2795) DUF433 PF04255.9 gi|336252933|ref|YP_004596040.1| - 0.15 11.4 0.1 0.22 10.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF433) Cwf_Cwc_15 PF04889.7 gi|336252933|ref|YP_004596040.1| - 0.34 10.5 4.2 0.38 10.4 2.9 1.0 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein CxxCxxCC PF03692.10 gi|336252934|ref|YP_004596041.1| - 0.00016 22.0 2.5 0.0061 17.0 1.7 2.3 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain Helicase_C_2 PF13307.1 gi|336252936|ref|YP_004596043.1| - 3e-21 76.0 0.0 4.5e-21 75.5 0.0 1.3 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.10 gi|336252936|ref|YP_004596043.1| - 3.1e-07 29.9 0.0 4.9e-07 29.3 0.0 1.3 1 0 0 1 1 1 1 DEAD_2 AAA_19 PF13245.1 gi|336252936|ref|YP_004596043.1| - 3.8e-05 23.3 0.1 0.00011 21.8 0.1 1.8 1 0 0 1 1 1 1 Part of AAA domain ResIII PF04851.10 gi|336252936|ref|YP_004596043.1| - 4e-05 23.5 0.0 0.0098 15.7 0.0 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|336252936|ref|YP_004596043.1| - 0.00013 21.5 0.0 0.13 11.7 0.0 2.3 2 0 0 2 2 2 2 DEAD/DEAH box helicase AAA_22 PF13401.1 gi|336252936|ref|YP_004596043.1| - 0.00032 20.8 0.0 0.0016 18.5 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|336252936|ref|YP_004596043.1| - 0.00044 19.8 0.4 0.6 9.6 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|336252936|ref|YP_004596043.1| - 0.006 16.5 0.1 0.035 14.0 0.0 2.4 2 1 1 3 3 3 1 AAA ATPase domain DXP_redisom_C PF08436.7 gi|336252936|ref|YP_004596043.1| - 0.0099 15.7 0.0 0.043 13.6 0.0 1.9 2 0 0 2 2 2 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal Mg_chelatase PF01078.16 gi|336252936|ref|YP_004596043.1| - 0.018 14.1 0.0 0.03 13.4 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI PhoH PF02562.11 gi|336252936|ref|YP_004596043.1| - 0.035 13.3 0.0 0.065 12.4 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein AAA_10 PF12846.2 gi|336252936|ref|YP_004596043.1| - 0.05 13.0 0.1 2.1 7.7 0.0 2.3 2 0 0 2 2 2 0 AAA-like domain PRO8NT PF08082.6 gi|336252936|ref|YP_004596043.1| - 0.078 12.6 0.0 0.15 11.6 0.0 1.4 1 0 0 1 1 1 0 PRO8NT (NUC069), PrP8 N-terminal domain DUF2075 PF09848.4 gi|336252936|ref|YP_004596043.1| - 0.084 11.8 0.0 1.5 7.6 0.0 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_33 PF13671.1 gi|336252936|ref|YP_004596043.1| - 0.089 12.6 0.0 0.91 9.3 0.0 2.5 2 0 0 2 2 2 0 AAA domain AAA PF00004.24 gi|336252936|ref|YP_004596043.1| - 0.19 11.9 0.0 2 8.6 0.0 2.3 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Met_10 PF02475.11 gi|336252938|ref|YP_004596045.1| - 1.5e-48 165.0 0.0 4.4e-47 160.2 0.0 2.1 2 0 0 2 2 2 1 Met-10+ like-protein Methyltransf_26 PF13659.1 gi|336252938|ref|YP_004596045.1| - 4.4e-09 36.4 0.3 4.4e-09 36.4 0.2 2.0 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|336252938|ref|YP_004596045.1| - 4.9e-09 36.7 0.4 1.1e-08 35.5 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|336252938|ref|YP_004596045.1| - 2.7e-05 23.7 0.0 3.9e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase MTS PF05175.9 gi|336252938|ref|YP_004596045.1| - 3.7e-05 23.1 0.0 0.00012 21.5 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase small domain tRNA_U5-meth_tr PF05958.6 gi|336252938|ref|YP_004596045.1| - 0.0098 14.6 0.0 0.014 14.1 0.0 1.1 1 0 0 1 1 1 1 tRNA (Uracil-5-)-methyltransferase DNA_methylase PF00145.12 gi|336252938|ref|YP_004596045.1| - 0.019 14.1 0.0 0.026 13.6 0.0 1.2 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase Methyltransf_24 PF13578.1 gi|336252938|ref|YP_004596045.1| - 0.04 14.7 0.1 0.12 13.2 0.1 1.8 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_23 PF13489.1 gi|336252938|ref|YP_004596045.1| - 0.077 12.7 0.0 0.82 9.3 0.0 2.3 1 1 0 1 1 1 0 Methyltransferase domain PrmA PF06325.8 gi|336252938|ref|YP_004596045.1| - 0.083 11.9 0.0 0.15 11.1 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Cons_hypoth95 PF03602.10 gi|336252938|ref|YP_004596045.1| - 0.099 12.0 0.0 0.18 11.1 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical protein 95 RrnaAD PF00398.15 gi|336252938|ref|YP_004596045.1| - 0.16 10.9 0.0 0.24 10.3 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_31 PF13847.1 gi|336252938|ref|YP_004596045.1| - 0.16 11.5 0.0 0.27 10.8 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain NMD3 PF04981.8 gi|336252939|ref|YP_004596046.1| - 1.4e-69 233.8 0.2 1.7e-69 233.5 0.1 1.1 1 0 0 1 1 1 1 NMD3 family zf-ribbon_3 PF13248.1 gi|336252939|ref|YP_004596046.1| - 0.00039 19.5 2.8 0.69 9.1 0.1 3.4 3 0 0 3 3 3 2 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|336252939|ref|YP_004596046.1| - 0.00039 19.8 0.9 2.7 7.5 0.1 3.5 3 0 0 3 3 3 2 zinc-ribbon domain DZR PF12773.2 gi|336252939|ref|YP_004596046.1| - 0.0014 18.3 5.7 0.17 11.6 2.8 3.1 2 1 1 3 3 3 1 Double zinc ribbon Rpr2 PF04032.11 gi|336252939|ref|YP_004596046.1| - 0.0039 17.0 0.1 0.18 11.6 0.0 3.0 3 0 0 3 3 3 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain FYVE PF01363.16 gi|336252939|ref|YP_004596046.1| - 0.0099 15.7 1.0 0.64 9.9 0.3 2.5 2 0 0 2 2 2 1 FYVE zinc finger GFA PF04828.9 gi|336252939|ref|YP_004596046.1| - 0.028 14.3 4.5 3.7 7.5 0.1 3.4 2 1 0 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme zf-dskA_traR PF01258.12 gi|336252939|ref|YP_004596046.1| - 0.16 11.7 0.2 0.16 11.7 0.1 3.5 4 0 0 4 4 4 0 Prokaryotic dksA/traR C4-type zinc finger Nudix_N_2 PF14803.1 gi|336252939|ref|YP_004596046.1| - 0.16 11.6 17.7 1.1 9.0 0.0 4.1 5 0 0 5 5 5 0 Nudix N-terminal NOB1_Zn_bind PF08772.6 gi|336252939|ref|YP_004596046.1| - 0.45 10.3 2.4 4.8 7.0 0.0 3.1 3 0 0 3 3 3 0 Nin one binding (NOB1) Zn-ribbon like Zn-ribbon_8 PF09723.5 gi|336252939|ref|YP_004596046.1| - 2.5 8.1 7.9 26 4.8 0.2 3.3 3 0 0 3 3 3 0 Zinc ribbon domain zf-NADH-PPase PF09297.6 gi|336252939|ref|YP_004596046.1| - 4.9 6.7 13.8 1 8.8 0.5 3.1 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain Peptidase_M48 PF01435.13 gi|336252940|ref|YP_004596047.1| - 4.5e-42 144.1 0.1 7e-42 143.5 0.0 1.3 1 1 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|336252940|ref|YP_004596047.1| - 3.2e-10 39.4 0.3 1e-08 34.5 0.0 2.2 2 0 0 2 2 2 1 BlaR1 peptidase M56 Peptidase_MA_2 PF13485.1 gi|336252940|ref|YP_004596047.1| - 0.04 13.9 0.0 0.092 12.7 0.0 1.6 1 0 0 1 1 1 0 Peptidase MA superfamily SprT-like PF10263.4 gi|336252940|ref|YP_004596047.1| - 0.11 12.0 0.0 0.17 11.5 0.0 1.2 1 0 0 1 1 1 0 SprT-like family DUF4157 PF13699.1 gi|336252940|ref|YP_004596047.1| - 0.12 12.5 0.1 0.25 11.5 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4157) ABC2_membrane PF01061.19 gi|336252941|ref|YP_004596048.1| - 0.13 11.4 1.0 0.15 11.2 0.7 1.1 1 0 0 1 1 1 0 ABC-2 type transporter ABC2_membrane_2 PF12679.2 gi|336252941|ref|YP_004596048.1| - 0.16 10.7 1.7 0.19 10.5 1.2 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein TctB PF07331.6 gi|336252941|ref|YP_004596048.1| - 0.88 9.2 6.4 1.1 8.9 4.5 1.1 1 0 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family DUF2892 PF11127.3 gi|336252941|ref|YP_004596048.1| - 1.8 8.4 7.0 4 7.3 4.9 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF2892) DUF1469 PF07332.6 gi|336252942|ref|YP_004596049.1| - 0.0031 17.2 2.3 0.0031 17.2 1.6 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF1469) GRA6 PF05084.8 gi|336252942|ref|YP_004596049.1| - 0.79 9.2 6.4 0.095 12.2 0.9 2.0 2 1 1 3 3 3 0 Granule antigen protein (GRA6) DNA_primase_lrg PF04104.9 gi|336252943|ref|YP_004596050.1| - 1.2e-34 119.7 0.0 1.9e-34 119.1 0.0 1.3 1 0 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit Abhydrolase_6 PF12697.2 gi|336252944|ref|YP_004596051.1| - 6.2e-42 144.0 7.7 2.4e-41 142.1 5.3 1.7 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|336252944|ref|YP_004596051.1| - 4.2e-27 95.1 0.0 6.9e-27 94.4 0.0 1.3 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|336252944|ref|YP_004596051.1| - 2.9e-23 82.2 0.3 4.1e-22 78.4 0.2 2.0 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_4 PF08386.5 gi|336252944|ref|YP_004596051.1| - 4.2e-05 23.3 0.0 6.9e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 TAP-like protein DUF2048 PF09752.4 gi|336252944|ref|YP_004596051.1| - 0.00033 19.6 0.1 0.0046 15.8 0.1 2.0 1 1 0 1 1 1 1 Uncharacterized conserved protein (DUF2048) Peptidase_S9 PF00326.16 gi|336252944|ref|YP_004596051.1| - 0.00067 18.9 0.0 0.006 15.8 0.0 2.3 3 0 0 3 3 3 1 Prolyl oligopeptidase family DLH PF01738.13 gi|336252944|ref|YP_004596051.1| - 0.001 18.3 0.0 0.033 13.4 0.0 2.1 2 0 0 2 2 2 1 Dienelactone hydrolase family LIP PF03583.9 gi|336252944|ref|YP_004596051.1| - 0.014 14.5 0.2 0.68 9.0 0.0 2.1 2 0 0 2 2 2 0 Secretory lipase UPF0227 PF05728.7 gi|336252944|ref|YP_004596051.1| - 0.028 14.1 0.0 0.23 11.1 0.0 2.0 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0227) FSH1 PF03959.8 gi|336252944|ref|YP_004596051.1| - 0.031 13.7 0.0 0.054 12.9 0.0 1.3 1 0 0 1 1 1 0 Serine hydrolase (FSH1) Patatin PF01734.17 gi|336252944|ref|YP_004596051.1| - 0.04 13.8 0.0 0.057 13.3 0.0 1.3 1 0 0 1 1 1 0 Patatin-like phospholipase Abhydrolase_2 PF02230.11 gi|336252944|ref|YP_004596051.1| - 0.059 12.8 0.0 0.26 10.7 0.0 1.9 2 0 0 2 2 2 0 Phospholipase/Carboxylesterase Ndr PF03096.9 gi|336252944|ref|YP_004596051.1| - 0.089 11.2 0.0 0.13 10.6 0.0 1.2 1 0 0 1 1 1 0 Ndr family Plasmid_stabil PF05016.9 gi|336252945|ref|YP_004596052.1| - 0.12 12.7 0.1 0.18 12.2 0.1 1.4 1 1 0 1 1 1 0 Plasmid stabilisation system protein HTH_10 PF04967.7 gi|336252946|ref|YP_004596053.1| - 2.2e-15 55.9 0.0 3.2e-15 55.4 0.0 1.2 1 0 0 1 1 1 1 HTH DNA binding domain TetR_N PF00440.18 gi|336252946|ref|YP_004596053.1| - 0.068 12.8 0.3 0.2 11.2 0.2 1.7 1 1 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_AsnC-type PF13404.1 gi|336252946|ref|YP_004596053.1| - 0.16 11.5 0.6 0.27 10.8 0.4 1.3 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain PCNA_N PF00705.13 gi|336252947|ref|YP_004596054.1| - 3.1e-09 36.4 0.1 5.7e-09 35.5 0.1 1.4 1 0 0 1 1 1 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.10 gi|336252947|ref|YP_004596054.1| - 2.6e-05 24.1 0.0 5.3e-05 23.1 0.0 1.7 1 1 0 1 1 1 1 Proliferating cell nuclear antigen, C-terminal domain Rad9 PF04139.8 gi|336252947|ref|YP_004596054.1| - 0.05 12.7 0.0 0.092 11.8 0.0 1.4 1 0 0 1 1 1 0 Rad9 Usp PF00582.21 gi|336252949|ref|YP_004596056.1| - 9.2e-35 119.8 2.2 1.1e-34 119.6 1.6 1.0 1 0 0 1 1 1 1 Universal stress protein family UDG PF03167.14 gi|336252950|ref|YP_004596057.1| - 6.5e-35 119.8 0.0 7.8e-35 119.5 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily FtsJ PF01728.14 gi|336252952|ref|YP_004596059.1| - 2.1e-55 187.5 0.0 2.5e-55 187.2 0.0 1.1 1 0 0 1 1 1 1 FtsJ-like methyltransferase TRAM PF01938.15 gi|336252952|ref|YP_004596059.1| - 1.3e-12 47.2 1.1 2.4e-12 46.4 0.3 1.8 2 0 0 2 2 2 1 TRAM domain Methyltransf_26 PF13659.1 gi|336252952|ref|YP_004596059.1| - 0.00013 21.9 0.2 0.00034 20.6 0.1 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|336252952|ref|YP_004596059.1| - 0.00021 20.8 0.0 0.001 18.6 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|336252952|ref|YP_004596059.1| - 0.00025 21.5 0.2 0.00073 20.0 0.1 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|336252952|ref|YP_004596059.1| - 0.0017 18.0 0.0 0.0041 16.8 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|336252952|ref|YP_004596059.1| - 0.027 14.0 0.0 0.24 10.9 0.0 2.1 2 1 0 2 2 2 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MaoC_dehydratas PF01575.14 gi|336252952|ref|YP_004596059.1| - 0.029 13.7 0.0 0.059 12.7 0.0 1.5 1 0 0 1 1 1 0 MaoC like domain PrmA PF06325.8 gi|336252952|ref|YP_004596059.1| - 0.11 11.5 0.1 0.16 11.0 0.1 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) DUF3812 PF12757.2 gi|336252952|ref|YP_004596059.1| - 0.58 10.1 2.8 2.2 8.2 0.6 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3812) RHH_1 PF01402.16 gi|336252953|ref|YP_004596060.1| - 0.00047 19.9 0.3 0.0015 18.3 0.0 1.9 1 1 1 2 2 2 1 Ribbon-helix-helix protein, copG family TatC PF00902.13 gi|336252954|ref|YP_004596061.1| - 5.4e-69 231.8 36.3 4.1e-38 130.9 9.9 2.2 2 0 0 2 2 2 2 Sec-independent protein translocase protein (TatC) DUF2621 PF11084.3 gi|336252954|ref|YP_004596061.1| - 0.075 12.7 1.8 35 4.0 0.2 3.3 3 0 0 3 3 3 0 Protein of unknown function (DUF2621) TatC PF00902.13 gi|336252955|ref|YP_004596062.1| - 1.1e-37 129.5 18.1 1.3e-37 129.2 12.5 1.0 1 0 0 1 1 1 1 Sec-independent protein translocase protein (TatC) AF-4 PF05110.8 gi|336252955|ref|YP_004596062.1| - 0.36 8.6 17.4 0.45 8.3 12.0 1.0 1 0 0 1 1 1 0 AF-4 proto-oncoprotein Molybdopterin PF00384.17 gi|336252956|ref|YP_004596063.1| - 3e-50 171.2 0.0 3.8e-50 170.8 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|336252956|ref|YP_004596063.1| - 2.5e-15 56.2 0.1 7.1e-14 51.5 0.0 2.5 1 1 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|336252956|ref|YP_004596063.1| - 9.8e-07 28.4 2.2 2.5e-06 27.1 1.5 1.7 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain MFS_1 PF07690.11 gi|336252957|ref|YP_004596064.1| - 5.1e-26 91.2 69.9 7.4e-19 67.6 24.4 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily NIR_SIR PF01077.17 gi|336252958|ref|YP_004596065.1| - 1.2e-44 151.4 0.1 8.6e-28 96.6 0.0 2.4 2 0 0 2 2 2 2 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.12 gi|336252958|ref|YP_004596065.1| - 2.1e-35 120.1 0.1 2.2e-16 59.2 0.0 3.2 2 1 0 2 2 2 2 Nitrite/Sulfite reductase ferredoxin-like half domain Asn_synthase PF00733.16 gi|336252961|ref|YP_004596068.1| - 1.6e-11 44.1 1.1 2.7e-11 43.4 0.7 1.5 1 1 0 1 1 1 1 Asparagine synthase tRNA_Me_trans PF03054.11 gi|336252961|ref|YP_004596068.1| - 4.2e-09 35.4 0.1 3.5e-06 25.8 0.0 2.2 2 0 0 2 2 2 2 tRNA methyl transferase NAD_synthase PF02540.12 gi|336252961|ref|YP_004596068.1| - 1.3e-08 34.0 0.0 2.1e-08 33.3 0.0 1.3 1 0 0 1 1 1 1 NAD synthase QueC PF06508.8 gi|336252961|ref|YP_004596068.1| - 1.3e-05 24.5 0.0 6.8e-05 22.2 0.0 2.0 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.15 gi|336252961|ref|YP_004596068.1| - 0.00085 18.8 0.0 0.0025 17.3 0.0 1.8 2 0 0 2 2 2 1 PP-loop family Arginosuc_synth PF00764.14 gi|336252961|ref|YP_004596068.1| - 0.012 14.6 0.1 0.021 13.8 0.1 1.3 1 0 0 1 1 1 0 Arginosuccinate synthase DUF208 PF02677.9 gi|336252961|ref|YP_004596068.1| - 0.015 15.0 0.1 0.026 14.2 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized BCR, COG1636 PAPS_reduct PF01507.14 gi|336252961|ref|YP_004596068.1| - 0.1 12.4 0.0 0.2 11.4 0.0 1.5 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family cwf21 PF08312.7 gi|336252961|ref|YP_004596068.1| - 0.37 10.6 2.2 0.39 10.5 0.2 2.1 2 0 0 2 2 2 0 cwf21 domain GFO_IDH_MocA PF01408.17 gi|336252962|ref|YP_004596069.1| - 2.6e-27 95.7 0.1 1.4e-26 93.3 0.0 2.1 2 1 1 3 3 3 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|336252962|ref|YP_004596069.1| - 0.00025 20.8 0.0 0.00051 19.8 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain F420_oxidored PF03807.12 gi|336252962|ref|YP_004596069.1| - 0.0046 17.3 0.0 0.011 16.1 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Semialdhyde_dh PF01118.19 gi|336252962|ref|YP_004596069.1| - 0.074 13.3 0.0 0.15 12.3 0.0 1.6 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain ThuA PF06283.6 gi|336252963|ref|YP_004596070.1| - 3.9e-36 124.7 0.0 4.5e-36 124.5 0.0 1.0 1 0 0 1 1 1 1 Trehalose utilisation MtrB PF05440.7 gi|336252964|ref|YP_004596071.1| - 0.053 13.5 0.0 0.13 12.2 0.0 1.8 1 0 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase subunit B z-alpha PF02295.12 gi|336252965|ref|YP_004596072.1| - 0.0049 16.6 0.0 0.0094 15.7 0.0 1.5 1 0 0 1 1 1 1 Adenosine deaminase z-alpha domain MarR_2 PF12802.2 gi|336252965|ref|YP_004596072.1| - 0.007 16.0 0.0 0.025 14.2 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_45 PF14947.1 gi|336252965|ref|YP_004596072.1| - 0.014 15.1 0.0 0.021 14.6 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_IclR PF09339.5 gi|336252965|ref|YP_004596072.1| - 0.055 13.0 0.0 0.1 12.2 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain Mrr_N PF14338.1 gi|336252965|ref|YP_004596072.1| - 0.13 12.3 0.0 0.27 11.3 0.0 1.6 1 0 0 1 1 1 0 Mrr N-terminal domain DUF326 PF03860.11 gi|336252967|ref|YP_004596074.1| - 1.4e-05 24.6 45.7 0.0041 16.8 3.2 4.9 3 2 2 5 5 5 4 Domain of Unknown Function (DUF326) HDOD PF08668.7 gi|336252967|ref|YP_004596074.1| - 0.095 11.9 1.0 0.21 10.8 0.6 1.6 1 1 0 1 1 1 0 HDOD domain GAT PF03127.9 gi|336252967|ref|YP_004596074.1| - 0.28 11.1 3.6 1.1 9.2 0.1 2.2 2 0 0 2 2 2 0 GAT domain SPW PF03779.9 gi|336252968|ref|YP_004596075.1| - 9.7e-08 31.2 18.9 0.0002 20.6 2.9 2.4 2 1 0 2 2 2 2 SPW repeat Acyl_transf_3 PF01757.17 gi|336252968|ref|YP_004596075.1| - 0.19 10.5 2.1 0.22 10.3 1.5 1.0 1 0 0 1 1 1 0 Acyltransferase family DUF1212 PF06738.7 gi|336252968|ref|YP_004596075.1| - 0.65 9.4 3.2 0.82 9.0 1.2 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF1212) Glyco_hydro_15 PF00723.16 gi|336252969|ref|YP_004596076.1| - 6.8e-49 166.6 0.0 8.7e-44 149.7 0.0 2.1 1 1 1 2 2 2 2 Glycosyl hydrolases family 15 TPR_4 PF07721.9 gi|336252969|ref|YP_004596076.1| - 0.0011 19.1 0.6 0.038 14.4 0.1 3.4 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_2 PF07719.12 gi|336252969|ref|YP_004596076.1| - 0.077 12.9 0.7 5.9 7.0 0.0 2.9 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_10 PF13374.1 gi|336252969|ref|YP_004596076.1| - 0.089 12.7 0.4 17 5.5 0.0 3.0 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_9 PF13371.1 gi|336252969|ref|YP_004596076.1| - 0.14 12.0 2.7 4.3 7.2 0.1 3.7 4 0 0 4 4 4 0 Tetratricopeptide repeat TPR_19 PF14559.1 gi|336252969|ref|YP_004596076.1| - 0.27 11.5 0.9 1.7 9.0 0.0 2.5 3 0 0 3 3 3 0 Tetratricopeptide repeat VKOR PF07884.9 gi|336252970|ref|YP_004596077.1| - 7.5e-17 61.4 5.4 7.5e-17 61.4 3.8 2.5 2 0 0 2 2 2 1 Vitamin K epoxide reductase family SPW PF03779.9 gi|336252970|ref|YP_004596077.1| - 0.00043 19.6 40.4 0.027 13.8 3.1 5.5 5 0 0 5 5 5 4 SPW repeat adh_short PF00106.20 gi|336252971|ref|YP_004596078.1| - 5.7e-32 110.9 3.4 7.7e-32 110.5 2.4 1.2 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|336252971|ref|YP_004596078.1| - 1e-16 61.1 1.3 1.5e-16 60.5 0.9 1.2 1 0 0 1 1 1 1 KR domain adh_short_C2 PF13561.1 gi|336252971|ref|YP_004596078.1| - 3.4e-09 36.8 0.0 4.8e-09 36.3 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase NAD_binding_10 PF13460.1 gi|336252971|ref|YP_004596078.1| - 0.014 15.4 2.3 0.025 14.6 1.6 1.6 1 1 0 1 1 1 0 NADH(P)-binding Epimerase PF01370.16 gi|336252971|ref|YP_004596078.1| - 0.082 12.3 0.1 0.13 11.6 0.1 1.4 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family Eno-Rase_NADH_b PF12242.3 gi|336252971|ref|YP_004596078.1| - 2.6 7.9 4.8 0.34 10.7 0.3 1.8 2 0 0 2 2 2 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase DUF892 PF05974.7 gi|336252973|ref|YP_004596080.1| - 3.9e-25 88.5 2.0 4.7e-25 88.2 1.4 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF892) SlyX PF04102.7 gi|336252973|ref|YP_004596080.1| - 0.0086 16.4 0.3 0.14 12.5 0.1 2.5 2 1 0 2 2 2 1 SlyX DUF2383 PF09537.5 gi|336252973|ref|YP_004596080.1| - 0.029 14.6 0.2 0.061 13.5 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF2383) MerR-DNA-bind PF09278.6 gi|336252973|ref|YP_004596080.1| - 1 9.8 5.4 3 8.3 0.3 2.5 2 0 0 2 2 2 0 MerR, DNA binding DUF892 PF05974.7 gi|336252974|ref|YP_004596081.1| - 1.8e-15 57.0 0.7 2.4e-14 53.4 0.5 1.9 1 1 0 1 1 1 1 Domain of unknown function (DUF892) DUF4376 PF14301.1 gi|336252974|ref|YP_004596081.1| - 0.044 13.9 0.1 0.66 10.1 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4376) DUF3782 PF12644.2 gi|336252974|ref|YP_004596081.1| - 0.35 10.6 1.5 0.81 9.5 0.9 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3782) DUF4259 PF14078.1 gi|336252974|ref|YP_004596081.1| - 2.1 8.8 6.4 6.2 7.3 0.2 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF4259) MOSC PF03473.12 gi|336252976|ref|YP_004596083.1| - 9e-20 70.5 0.0 1.3e-19 69.9 0.0 1.2 1 0 0 1 1 1 1 MOSC domain MOSC_N PF03476.11 gi|336252976|ref|YP_004596083.1| - 3e-14 52.7 0.0 4.9e-14 52.0 0.0 1.5 1 0 0 1 1 1 1 MOSC N-terminal beta barrel domain DUF368 PF04018.8 gi|336252978|ref|YP_004596085.1| - 3.8e-57 193.4 18.8 4.6e-57 193.1 13.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF368) MutS_V PF00488.16 gi|336252979|ref|YP_004596086.1| - 5.6e-11 42.2 0.0 1.1e-10 41.3 0.0 1.4 1 0 0 1 1 1 1 MutS domain V HHH PF00633.18 gi|336252979|ref|YP_004596086.1| - 9.3e-06 25.0 0.8 0.00072 19.1 0.0 3.2 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|336252979|ref|YP_004596086.1| - 0.0019 18.3 0.8 0.0019 18.3 0.6 3.6 3 0 0 3 3 3 1 Helix-hairpin-helix domain AAA_21 PF13304.1 gi|336252979|ref|YP_004596086.1| - 0.028 14.3 0.1 0.16 11.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain Transposase_20 PF02371.11 gi|336252979|ref|YP_004596086.1| - 0.068 13.2 0.0 0.18 11.9 0.0 1.8 1 0 0 1 1 1 0 Transposase IS116/IS110/IS902 family IMS_HHH PF11798.3 gi|336252979|ref|YP_004596086.1| - 0.16 12.1 0.0 0.37 10.9 0.0 1.7 1 0 0 1 1 1 0 IMS family HHH motif AAA PF00004.24 gi|336252979|ref|YP_004596086.1| - 0.25 11.5 0.9 0.58 10.3 0.0 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) DUF1059 PF06348.6 gi|336252980|ref|YP_004596087.1| - 2.2e-05 24.1 0.0 2.6e-05 23.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1059) DBD_Tnp_Mut PF03108.10 gi|336252980|ref|YP_004596087.1| - 0.067 12.7 0.0 0.09 12.3 0.0 1.3 1 1 0 1 1 1 0 MuDR family transposase GFO_IDH_MocA PF01408.17 gi|336252981|ref|YP_004596088.1| - 7.3e-23 81.3 0.2 1.6e-22 80.2 0.0 1.6 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_3 PF03447.11 gi|336252981|ref|YP_004596088.1| - 4.7e-07 30.2 0.2 8.9e-07 29.3 0.1 1.4 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain GFO_IDH_MocA_C PF02894.12 gi|336252981|ref|YP_004596088.1| - 0.0021 17.8 0.0 0.0046 16.7 0.0 1.7 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain 2-Hacid_dh_C PF02826.14 gi|336252981|ref|YP_004596088.1| - 0.034 13.3 0.0 0.085 12.0 0.0 1.7 1 1 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|336252981|ref|YP_004596088.1| - 0.079 13.3 0.0 0.19 12.1 0.0 1.7 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Cpn60_TCP1 PF00118.19 gi|336252982|ref|YP_004596089.1| - 1.7e-125 419.4 0.0 1.9e-125 419.2 0.0 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family DUF3509 PF12021.3 gi|336252982|ref|YP_004596089.1| - 0.048 13.4 0.0 0.15 11.8 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF3509) FmdA_AmdA PF03069.10 gi|336252983|ref|YP_004596090.1| - 2.9e-133 444.1 0.0 4e-133 443.6 0.0 1.2 1 0 0 1 1 1 1 Acetamidase/Formamidase family AAA_16 PF13191.1 gi|336252984|ref|YP_004596091.1| - 6.2e-14 52.4 0.1 1.4e-12 47.9 0.0 2.5 2 1 0 2 2 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|336252984|ref|YP_004596091.1| - 4.8e-10 39.6 0.0 9.6e-10 38.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|336252984|ref|YP_004596091.1| - 7.5e-06 26.1 0.0 1.9e-05 24.8 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Cdc6_C PF09079.6 gi|336252984|ref|YP_004596091.1| - 9.8e-06 25.2 0.3 3.3e-05 23.5 0.0 2.1 2 0 0 2 2 1 1 CDC6, C terminal Arch_ATPase PF01637.13 gi|336252984|ref|YP_004596091.1| - 7.5e-05 22.5 0.0 0.00017 21.3 0.0 1.6 1 1 0 1 1 1 1 Archaeal ATPase AAA_19 PF13245.1 gi|336252984|ref|YP_004596091.1| - 0.00013 21.6 0.0 0.00037 20.1 0.0 1.8 1 0 0 1 1 1 1 Part of AAA domain IstB_IS21 PF01695.12 gi|336252984|ref|YP_004596091.1| - 0.00021 20.7 0.0 0.33 10.3 0.0 2.6 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_33 PF13671.1 gi|336252984|ref|YP_004596091.1| - 0.00027 20.8 0.0 0.00062 19.6 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_35 PF14516.1 gi|336252984|ref|YP_004596091.1| - 0.00038 19.1 0.0 0.02 13.5 0.0 2.4 3 0 0 3 3 3 1 AAA-like domain T2SE PF00437.15 gi|336252984|ref|YP_004596091.1| - 0.0012 17.8 0.0 0.0019 17.1 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_11 PF13086.1 gi|336252984|ref|YP_004596091.1| - 0.0013 18.3 0.0 0.002 17.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|336252984|ref|YP_004596091.1| - 0.0013 19.5 1.0 0.0096 16.7 0.4 2.6 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|336252984|ref|YP_004596091.1| - 0.0015 18.4 0.1 0.068 13.0 0.0 2.3 1 1 0 2 2 2 1 AAA domain Viral_helicase1 PF01443.13 gi|336252984|ref|YP_004596091.1| - 0.0024 17.4 0.0 0.0037 16.8 0.0 1.3 1 0 0 1 1 1 1 Viral (Superfamily 1) RNA helicase AAA_32 PF13654.1 gi|336252984|ref|YP_004596091.1| - 0.0026 16.4 0.1 1.2 7.6 0.0 2.3 2 0 0 2 2 2 2 AAA domain MarR_2 PF12802.2 gi|336252984|ref|YP_004596091.1| - 0.0034 17.0 0.1 0.016 14.8 0.0 2.1 1 1 0 1 1 1 1 MarR family NACHT PF05729.7 gi|336252984|ref|YP_004596091.1| - 0.0046 16.6 0.0 0.014 15.0 0.0 1.9 1 1 0 1 1 1 1 NACHT domain AAA_18 PF13238.1 gi|336252984|ref|YP_004596091.1| - 0.0057 16.9 0.0 0.019 15.2 0.0 2.0 2 1 0 2 2 1 1 AAA domain DUF815 PF05673.8 gi|336252984|ref|YP_004596091.1| - 0.0063 15.4 0.0 0.027 13.4 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF815) Sigma54_activat PF00158.21 gi|336252984|ref|YP_004596091.1| - 0.0068 15.8 0.0 0.012 15.0 0.0 1.3 1 0 0 1 1 1 1 Sigma-54 interaction domain NTPase_1 PF03266.10 gi|336252984|ref|YP_004596091.1| - 0.009 15.7 0.0 0.02 14.5 0.0 1.6 1 0 0 1 1 1 1 NTPase Miro PF08477.8 gi|336252984|ref|YP_004596091.1| - 0.0097 16.4 0.0 0.019 15.4 0.0 1.5 1 0 0 1 1 1 1 Miro-like protein Bac_DnaA PF00308.13 gi|336252984|ref|YP_004596091.1| - 0.012 15.2 0.0 0.037 13.6 0.0 1.7 2 0 0 2 2 2 0 Bacterial dnaA protein DUF2075 PF09848.4 gi|336252984|ref|YP_004596091.1| - 0.013 14.4 0.0 0.021 13.8 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_30 PF13604.1 gi|336252984|ref|YP_004596091.1| - 0.025 14.1 0.2 0.066 12.7 0.0 1.7 2 0 0 2 2 1 0 AAA domain RNA_helicase PF00910.17 gi|336252984|ref|YP_004596091.1| - 0.028 14.6 0.0 0.062 13.4 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_24 PF13479.1 gi|336252984|ref|YP_004596091.1| - 0.031 13.8 0.0 0.078 12.5 0.0 1.6 2 0 0 2 2 2 0 AAA domain DUF835 PF05763.7 gi|336252984|ref|YP_004596091.1| - 0.031 13.8 0.2 0.23 11.0 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF835) AAA_28 PF13521.1 gi|336252984|ref|YP_004596091.1| - 0.036 14.0 0.0 0.073 13.0 0.0 1.7 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|336252984|ref|YP_004596091.1| - 0.042 12.9 0.0 0.11 11.6 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin TrwB_AAD_bind PF10412.4 gi|336252984|ref|YP_004596091.1| - 0.049 12.2 0.0 0.077 11.6 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain ArgK PF03308.11 gi|336252984|ref|YP_004596091.1| - 0.069 11.9 0.0 0.12 11.0 0.0 1.3 1 0 0 1 1 1 0 ArgK protein KAP_NTPase PF07693.9 gi|336252984|ref|YP_004596091.1| - 0.092 11.7 0.0 5.7 5.8 0.0 2.2 1 1 1 2 2 2 0 KAP family P-loop domain SRP54 PF00448.17 gi|336252984|ref|YP_004596091.1| - 0.093 12.1 0.0 0.3 10.4 0.0 1.8 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain Septin PF00735.13 gi|336252984|ref|YP_004596091.1| - 0.096 11.6 0.0 0.15 11.0 0.0 1.2 1 0 0 1 1 1 0 Septin Annexin PF00191.15 gi|336252984|ref|YP_004596091.1| - 0.11 12.3 0.1 0.64 9.9 0.0 2.2 1 1 1 2 2 2 0 Annexin Gtr1_RagA PF04670.7 gi|336252984|ref|YP_004596091.1| - 0.15 11.2 0.0 0.22 10.6 0.0 1.3 1 0 0 1 1 1 0 Gtr1/RagA G protein conserved region DUF2267 PF10025.4 gi|336252985|ref|YP_004596092.1| - 5.5e-22 78.1 4.8 7e-22 77.8 3.3 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2267) PGA_cap PF09587.5 gi|336252985|ref|YP_004596092.1| - 0.12 11.6 0.0 0.13 11.6 0.0 1.4 1 1 0 1 1 1 0 Bacterial capsule synthesis protein PGA_cap DUF2267 PF10025.4 gi|336252986|ref|YP_004596093.1| - 4.6e-21 75.1 5.6 5.3e-21 74.9 3.9 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2267) MgtE_N PF03448.12 gi|336252986|ref|YP_004596093.1| - 0.2 12.0 7.4 2.3 8.5 0.1 2.8 2 1 0 2 2 2 0 MgtE intracellular N domain TruB_C PF09142.6 gi|336252986|ref|YP_004596093.1| - 1.1 8.9 4.5 2.8 7.6 0.3 2.4 2 0 0 2 2 2 0 tRNA Pseudouridine synthase II, C terminal Halo_GVPC PF05465.8 gi|336252987|ref|YP_004596094.1| - 0.01 15.7 1.5 0.026 14.4 1.0 1.7 1 0 0 1 1 1 0 Halobacterial gas vesicle protein C (GVPC) repeat ALIX_LYPXL_bnd PF13949.1 gi|336252987|ref|YP_004596094.1| - 0.012 14.5 2.4 0.015 14.2 1.7 1.2 1 0 0 1 1 1 0 ALIX V-shaped domain binding to HIV DUF883 PF05957.8 gi|336252987|ref|YP_004596094.1| - 0.016 15.5 7.8 0.12 12.8 1.1 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) Cytochrom_B562 PF07361.6 gi|336252987|ref|YP_004596094.1| - 0.055 13.8 1.9 1.6 9.2 0.1 2.0 1 1 1 2 2 2 0 Cytochrome b562 Hemerythrin PF01814.18 gi|336252987|ref|YP_004596094.1| - 0.12 12.5 3.2 1.1 9.3 0.3 2.0 1 1 1 2 2 2 0 Hemerythrin HHE cation binding domain ApoC-I PF04691.7 gi|336252987|ref|YP_004596094.1| - 0.23 11.1 1.1 1.3 8.7 0.1 2.3 2 1 0 2 2 2 0 Apolipoprotein C-I (ApoC-1) Apolipoprotein PF01442.13 gi|336252987|ref|YP_004596094.1| - 0.28 10.6 4.5 0.42 10.0 3.1 1.3 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain DUF2564 PF10819.3 gi|336252987|ref|YP_004596094.1| - 0.5 10.5 4.7 1.2 9.3 0.1 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF2564) CorA PF01544.13 gi|336252987|ref|YP_004596094.1| - 0.51 9.3 6.2 0.56 9.1 4.3 1.0 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein Mnd1 PF03962.10 gi|336252987|ref|YP_004596094.1| - 0.57 9.8 3.9 0.64 9.6 2.7 1.1 1 0 0 1 1 1 0 Mnd1 family DUF2524 PF10732.4 gi|336252987|ref|YP_004596094.1| - 0.6 10.2 2.9 0.86 9.7 0.2 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF2524) YtxH PF12732.2 gi|336252987|ref|YP_004596094.1| - 1.1 9.6 6.4 17 5.8 4.5 2.1 1 1 0 1 1 1 0 YtxH-like protein Latarcin PF10279.4 gi|336252987|ref|YP_004596094.1| - 1.3 9.3 5.6 52 4.1 3.9 2.1 1 1 0 1 1 1 0 Latarcin precursor Phasin PF05597.6 gi|336252987|ref|YP_004596094.1| - 1.3 8.7 4.9 5 6.8 0.3 2.1 1 1 0 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) MT0933_antitox PF14013.1 gi|336252987|ref|YP_004596094.1| - 1.9 8.6 7.3 3.2 7.9 3.7 2.4 1 1 1 2 2 2 0 MT0933-like antitoxin protein DUF4397 PF14344.1 gi|336252988|ref|YP_004596095.1| - 4.3e-52 175.5 3.7 6.4e-27 94.3 0.1 2.2 1 1 1 2 2 2 2 Domain of unknown function (DUF4397) TAT_signal PF10518.4 gi|336252988|ref|YP_004596095.1| - 0.0026 17.6 3.5 0.0069 16.3 2.4 1.8 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence AlgF PF11182.3 gi|336252988|ref|YP_004596095.1| - 0.032 13.9 0.1 0.13 11.9 0.1 1.8 1 1 1 2 2 2 0 Alginate O-acetyl transferase AlgF UvrB PF12344.3 gi|336252989|ref|YP_004596096.1| - 3.1e-18 64.9 0.2 7.3e-18 63.8 0.1 1.7 1 0 0 1 1 1 1 Ultra-violet resistance protein B Helicase_C PF00271.26 gi|336252989|ref|YP_004596096.1| - 3.5e-14 52.4 1.5 3.8e-14 52.2 0.0 1.9 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|336252989|ref|YP_004596096.1| - 2.2e-10 40.7 0.7 1.1e-09 38.3 0.0 2.4 3 0 0 3 3 3 1 Type III restriction enzyme, res subunit UVR PF02151.14 gi|336252989|ref|YP_004596096.1| - 1.6e-09 36.9 6.6 1.6e-09 36.9 4.6 2.8 3 0 0 3 3 3 1 UvrB/uvrC motif DEAD PF00270.24 gi|336252989|ref|YP_004596096.1| - 8.6e-06 25.3 0.0 0.00042 19.8 0.0 3.2 3 0 0 3 3 3 1 DEAD/DEAH box helicase UB2H PF14814.1 gi|336252989|ref|YP_004596096.1| - 0.0098 15.6 0.0 0.026 14.2 0.0 1.7 1 0 0 1 1 1 1 Bifunctional transglycosylase second domain DUF87 PF01935.12 gi|336252989|ref|YP_004596096.1| - 0.025 14.3 0.1 0.025 14.3 0.1 2.8 4 0 0 4 4 4 0 Domain of unknown function DUF87 Peripla_BP_3 PF13377.1 gi|336252989|ref|YP_004596096.1| - 0.045 13.7 0.1 5.1 7.0 0.0 3.2 3 0 0 3 3 3 0 Periplasmic binding protein-like domain Cofilin_ADF PF00241.15 gi|336252989|ref|YP_004596096.1| - 0.09 12.6 0.1 0.27 11.1 0.1 1.8 1 0 0 1 1 1 0 Cofilin/tropomyosin-type actin-binding protein DUF4402 PF14352.1 gi|336252990|ref|YP_004596097.1| - 0.003 18.0 6.3 0.63 10.5 1.8 2.1 1 1 1 2 2 2 2 Domain of unknown function (DUF4402) EF-hand_5 PF13202.1 gi|336252990|ref|YP_004596097.1| - 0.01 15.1 0.7 0.027 13.8 0.2 2.0 2 0 0 2 2 2 0 EF hand PapC_N PF13954.1 gi|336252990|ref|YP_004596097.1| - 0.012 15.2 0.0 0.021 14.3 0.0 1.5 1 0 0 1 1 1 0 PapC N-terminal domain LPAM_1 PF08139.7 gi|336252990|ref|YP_004596097.1| - 0.19 12.0 1.4 0.29 11.4 1.0 1.3 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site DUF2271 PF10029.4 gi|336252990|ref|YP_004596097.1| - 0.23 10.9 1.7 1.7 8.1 0.2 2.1 2 0 0 2 2 2 0 Predicted periplasmic protein (DUF2271) DUF2899 PF11449.3 gi|336252991|ref|YP_004596098.1| - 6.9e-73 245.4 9.8 1.8e-71 240.7 4.4 2.0 1 1 1 2 2 2 2 Protein of unknown function (DUF2899) Acetyltransf_1 PF00583.19 gi|336252992|ref|YP_004596099.1| - 1.5e-15 57.0 0.1 2.3e-15 56.3 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|336252992|ref|YP_004596099.1| - 3.5e-15 56.1 0.1 4.3e-15 55.8 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|336252992|ref|YP_004596099.1| - 4.6e-13 49.1 0.0 6.6e-13 48.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|336252992|ref|YP_004596099.1| - 8.1e-10 38.8 0.0 1.1e-09 38.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|336252992|ref|YP_004596099.1| - 1.8e-06 27.5 0.0 2.7e-06 27.0 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.1 gi|336252992|ref|YP_004596099.1| - 2.6e-06 27.6 0.1 3.1e-06 27.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|336252992|ref|YP_004596099.1| - 2e-05 24.4 0.4 0.00026 20.8 0.3 2.2 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|336252992|ref|YP_004596099.1| - 4.4e-05 23.4 0.3 6.3e-05 22.9 0.2 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain GNAT_acetyltr_2 PF13718.1 gi|336252992|ref|YP_004596099.1| - 0.04 13.2 0.0 0.05 12.9 0.0 1.2 1 0 0 1 1 1 0 GNAT acetyltransferase 2 SUI1 PF01253.17 gi|336252993|ref|YP_004596100.1| - 3.7e-22 77.9 0.0 5.2e-22 77.4 0.0 1.2 1 0 0 1 1 1 1 Translation initiation factor SUI1 Img2 PF05046.9 gi|336252993|ref|YP_004596100.1| - 0.01 16.0 0.0 0.016 15.3 0.0 1.3 1 1 0 1 1 1 0 Mitochondrial large subunit ribosomal protein (Img2) DUF192 PF02643.10 gi|336252994|ref|YP_004596101.1| - 2.6e-24 84.9 0.0 3.4e-24 84.6 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 Trypan_PARP PF05887.6 gi|336252994|ref|YP_004596101.1| - 0.053 13.3 12.4 0.18 11.5 5.0 2.2 2 0 0 2 2 2 0 Procyclic acidic repetitive protein (PARP) BUD22 PF09073.5 gi|336252994|ref|YP_004596101.1| - 0.11 11.5 9.7 0.11 11.5 6.7 1.1 1 0 0 1 1 1 0 BUD22 GOLD_2 PF13897.1 gi|336252994|ref|YP_004596101.1| - 0.38 10.9 5.4 3.3 7.9 0.0 2.7 2 1 1 3 3 3 0 Golgi-dynamics membrane-trafficking DUF1510 PF07423.6 gi|336252994|ref|YP_004596101.1| - 3.7 6.8 9.5 5.4 6.3 6.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1510) Daxx PF03344.10 gi|336252994|ref|YP_004596101.1| - 4.4 5.6 9.2 4.3 5.6 6.4 1.1 1 0 0 1 1 1 0 Daxx Family UvrC_HhH_N PF08459.6 gi|336252995|ref|YP_004596102.1| - 4.7e-44 149.6 0.0 9.7e-44 148.6 0.0 1.6 1 0 0 1 1 1 1 UvrC Helix-hairpin-helix N-terminal HHH PF00633.18 gi|336252995|ref|YP_004596102.1| - 6.6e-12 44.4 0.3 6.8e-09 34.9 0.1 2.8 2 0 0 2 2 2 2 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|336252995|ref|YP_004596102.1| - 2.3e-10 40.5 0.1 8e-10 38.7 0.1 2.0 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH_2 PF12826.2 gi|336252995|ref|YP_004596102.1| - 1.3e-09 37.8 0.0 4e-09 36.2 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif UVR PF02151.14 gi|336252995|ref|YP_004596102.1| - 2.1e-09 36.5 2.3 5.3e-09 35.3 1.6 1.7 1 0 0 1 1 1 1 UvrB/uvrC motif GIY-YIG PF01541.19 gi|336252995|ref|YP_004596102.1| - 3.7e-08 33.5 0.0 7.1e-08 32.7 0.0 1.5 1 0 0 1 1 1 1 GIY-YIG catalytic domain 5_3_exonuc PF01367.15 gi|336252995|ref|YP_004596102.1| - 0.00079 19.6 0.0 0.088 13.0 0.0 2.8 1 1 1 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold HHH_3 PF12836.2 gi|336252995|ref|YP_004596102.1| - 0.0033 17.3 0.0 0.019 14.8 0.0 2.3 1 1 0 1 1 1 1 Helix-hairpin-helix motif FbpA PF05833.6 gi|336252995|ref|YP_004596102.1| - 0.028 12.9 0.0 0.047 12.2 0.0 1.2 1 0 0 1 1 1 0 Fibronectin-binding protein A N-terminus (FbpA) HHH_8 PF14716.1 gi|336252995|ref|YP_004596102.1| - 0.084 13.0 0.0 0.51 10.5 0.0 2.3 2 0 0 2 2 2 0 Helix-hairpin-helix domain IMS_HHH PF11798.3 gi|336252995|ref|YP_004596102.1| - 0.094 12.8 0.1 0.61 10.2 0.0 2.2 2 0 0 2 2 2 0 IMS family HHH motif ABC_tran PF00005.22 gi|336252998|ref|YP_004596105.1| - 7.6e-29 100.7 0.0 1.4e-28 99.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|336252998|ref|YP_004596105.1| - 7.5e-12 45.8 0.0 3.9e-07 30.3 0.0 2.1 1 1 1 2 2 2 2 AAA domain DUF4162 PF13732.1 gi|336252998|ref|YP_004596105.1| - 8.6e-06 26.1 0.0 2.2e-05 24.8 0.0 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF4162) AAA_30 PF13604.1 gi|336252998|ref|YP_004596105.1| - 0.00079 19.0 0.0 0.0021 17.6 0.0 1.6 1 1 0 1 1 1 1 AAA domain ArgK PF03308.11 gi|336252998|ref|YP_004596105.1| - 0.0014 17.4 0.0 0.0029 16.4 0.0 1.4 1 0 0 1 1 1 1 ArgK protein SMC_N PF02463.14 gi|336252998|ref|YP_004596105.1| - 0.0016 17.7 0.0 0.5 9.5 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|336252998|ref|YP_004596105.1| - 0.0017 17.8 0.0 0.004 16.6 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|336252998|ref|YP_004596105.1| - 0.0044 17.3 0.1 0.0073 16.6 0.1 1.2 1 0 0 1 1 1 1 AAA domain SbcCD_C PF13558.1 gi|336252998|ref|YP_004596105.1| - 0.011 15.6 0.0 0.026 14.4 0.0 1.7 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit DUF258 PF03193.11 gi|336252998|ref|YP_004596105.1| - 0.012 14.7 0.0 0.019 14.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|336252998|ref|YP_004596105.1| - 0.023 14.6 0.0 0.043 13.8 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_10 PF12846.2 gi|336252998|ref|YP_004596105.1| - 0.03 13.7 0.0 0.4 10.0 0.0 2.1 2 0 0 2 2 2 0 AAA-like domain AAA_25 PF13481.1 gi|336252998|ref|YP_004596105.1| - 0.12 11.7 0.5 1.2 8.5 0.1 2.5 1 1 1 2 2 2 0 AAA domain ABC2_membrane_2 PF12679.2 gi|336252999|ref|YP_004596106.1| - 9.2e-52 175.5 16.8 1.1e-51 175.3 11.7 1.0 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|336252999|ref|YP_004596106.1| - 2.1e-14 53.2 28.8 2.8e-13 49.5 19.8 2.0 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|336252999|ref|YP_004596106.1| - 8.3e-09 34.9 20.6 8.3e-09 34.9 14.3 2.3 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|336252999|ref|YP_004596106.1| - 9.4e-06 25.0 13.8 9.4e-06 25.0 9.5 2.5 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|336252999|ref|YP_004596106.1| - 0.0019 17.3 14.8 0.0019 17.3 10.3 1.7 2 0 0 2 2 2 1 ABC-2 type transporter p53-inducible11 PF14936.1 gi|336252999|ref|YP_004596106.1| - 0.0076 16.2 2.2 0.016 15.1 1.5 1.5 1 0 0 1 1 1 1 Tumour protein p53-inducible protein 11 Fijivirus_P9-2 PF06837.6 gi|336252999|ref|YP_004596106.1| - 0.12 11.4 0.1 0.28 10.2 0.0 1.6 1 0 0 1 1 1 0 Fijivirus P9-2 protein DNA_ligase_aden PF01653.13 gi|336253000|ref|YP_004596107.1| - 1e-107 359.7 0.0 1.5e-107 359.2 0.0 1.2 1 0 0 1 1 1 1 NAD-dependent DNA ligase adenylation domain DNA_ligase_OB PF03120.11 gi|336253000|ref|YP_004596107.1| - 7.3e-29 99.2 1.7 7.3e-29 99.2 1.2 1.9 2 0 0 2 2 2 1 NAD-dependent DNA ligase OB-fold domain HHH_2 PF12826.2 gi|336253000|ref|YP_004596107.1| - 1.6e-20 72.6 0.5 5.7e-19 67.7 0.0 2.5 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|336253000|ref|YP_004596107.1| - 2.1e-19 69.4 0.4 2.4e-10 40.4 0.2 2.9 2 0 0 2 2 2 2 Helix-hairpin-helix domain BRCT PF00533.21 gi|336253000|ref|YP_004596107.1| - 4.2e-13 49.2 0.0 9e-13 48.1 0.0 1.6 1 0 0 1 1 1 1 BRCA1 C Terminus (BRCT) domain DNA_ligase_ZBD PF03119.11 gi|336253000|ref|YP_004596107.1| - 6.1e-06 25.8 2.3 6.1e-06 25.8 1.6 2.6 3 0 0 3 3 3 1 NAD-dependent DNA ligase C4 zinc finger domain HHH PF00633.18 gi|336253000|ref|YP_004596107.1| - 8.2e-05 22.0 0.3 1.2 9.0 0.0 4.5 4 0 0 4 4 4 1 Helix-hairpin-helix motif HHH_8 PF14716.1 gi|336253000|ref|YP_004596107.1| - 0.028 14.6 0.1 27 5.0 0.0 3.7 2 1 0 2 2 2 0 Helix-hairpin-helix domain E1-E2_ATPase PF00122.15 gi|336253000|ref|YP_004596107.1| - 0.042 12.8 0.2 0.08 11.9 0.2 1.4 1 0 0 1 1 1 0 E1-E2 ATPase 5_3_exonuc PF01367.15 gi|336253000|ref|YP_004596107.1| - 0.074 13.2 0.0 0.29 11.3 0.0 2.0 2 0 0 2 2 2 0 5'-3' exonuclease, C-terminal SAM fold PTCB-BRCT PF12738.2 gi|336253000|ref|YP_004596107.1| - 0.18 11.6 0.0 0.37 10.6 0.0 1.5 1 0 0 1 1 1 0 twin BRCT domain Fer2 PF00111.22 gi|336253001|ref|YP_004596108.1| - 3e-11 42.9 0.5 1.7e-10 40.5 0.3 1.9 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain SBP56 PF05694.6 gi|336253002|ref|YP_004596109.1| - 1e-194 647.3 0.1 1.2e-194 647.1 0.1 1.0 1 0 0 1 1 1 1 56kDa selenium binding protein (SBP56) Lactonase PF10282.4 gi|336253002|ref|YP_004596109.1| - 0.061 12.3 0.0 0.37 9.8 0.0 2.1 2 1 0 2 2 2 0 Lactonase, 7-bladed beta-propeller Fer2 PF00111.22 gi|336253003|ref|YP_004596110.1| - 3.3e-12 45.9 1.1 2.9e-11 42.9 0.7 2.1 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.1 gi|336253003|ref|YP_004596110.1| - 0.026 14.3 0.2 0.066 13.0 0.1 1.7 1 1 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Na_H_antiporter PF03553.9 gi|336253004|ref|YP_004596111.1| - 1.4e-58 198.3 36.6 1.5e-52 178.5 13.4 2.1 1 1 1 2 2 2 2 Na+/H+ antiporter family Gate PF07670.9 gi|336253004|ref|YP_004596111.1| - 0.012 15.4 1.5 0.012 15.4 1.1 3.7 3 1 0 3 3 3 0 Nucleoside recognition RIO1 PF01163.17 gi|336253005|ref|YP_004596112.1| - 1.5e-60 203.8 0.1 6.2e-60 201.8 0.0 1.8 2 0 0 2 2 2 1 RIO1 family APH PF01636.18 gi|336253005|ref|YP_004596112.1| - 8.1e-12 45.3 0.3 6.4e-06 26.0 0.0 2.7 1 1 1 2 2 2 2 Phosphotransferase enzyme family Pkinase PF00069.20 gi|336253005|ref|YP_004596112.1| - 5.7e-06 25.6 0.0 1.1e-05 24.6 0.0 1.4 1 1 0 1 1 1 1 Protein kinase domain Kdo PF06293.9 gi|336253005|ref|YP_004596112.1| - 0.00019 20.5 0.2 0.0013 17.8 0.0 2.2 2 1 0 2 2 2 1 Lipopolysaccharide kinase (Kdo/WaaP) family VQ PF05678.9 gi|336253005|ref|YP_004596112.1| - 0.06 12.3 0.1 0.12 11.4 0.0 1.5 1 0 0 1 1 1 0 VQ motif 5_nucleotid_C PF02872.13 gi|336253006|ref|YP_004596113.1| - 3.7e-46 156.9 0.1 6.9e-46 156.0 0.0 1.5 1 0 0 1 1 1 1 5'-nucleotidase, C-terminal domain PGA_cap PF09587.5 gi|336253006|ref|YP_004596113.1| - 6.5e-06 25.6 0.1 2.7e-05 23.6 0.1 1.9 1 1 1 2 2 2 1 Bacterial capsule synthesis protein PGA_cap B12-binding PF02310.14 gi|336253006|ref|YP_004596113.1| - 0.019 14.8 0.3 0.053 13.3 0.2 1.8 1 0 0 1 1 1 0 B12 binding domain Metallophos PF00149.23 gi|336253006|ref|YP_004596113.1| - 0.029 13.7 0.1 0.054 12.8 0.0 1.4 1 0 0 1 1 1 0 Calcineurin-like phosphoesterase CoA_binding_2 PF13380.1 gi|336253006|ref|YP_004596113.1| - 0.079 13.1 1.1 0.15 12.2 0.3 1.8 2 0 0 2 2 2 0 CoA binding domain tRNA-synt_1b PF00579.20 gi|336253007|ref|YP_004596114.1| - 1e-22 80.6 0.0 3.9e-22 78.7 0.0 1.7 1 1 0 1 1 1 1 tRNA synthetases class I (W and Y) tRNA-synt_1f PF01921.13 gi|336253007|ref|YP_004596114.1| - 0.21 10.2 0.0 0.32 9.6 0.0 1.2 1 0 0 1 1 1 0 tRNA synthetases class I (K) Metallophos_2 PF12850.2 gi|336253008|ref|YP_004596115.1| - 1.7e-29 102.6 0.5 2e-29 102.4 0.3 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|336253008|ref|YP_004596115.1| - 9.3e-05 21.9 3.5 0.0033 16.8 2.5 2.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase KH_1 PF00013.24 gi|336253009|ref|YP_004596116.1| - 1.1e-17 63.3 3.3 5.1e-09 35.6 0.3 2.2 2 0 0 2 2 2 2 KH domain KH_3 PF13014.1 gi|336253009|ref|YP_004596116.1| - 6e-08 32.1 1.5 0.00012 21.6 0.1 2.5 2 0 0 2 2 2 2 KH domain KH_2 PF07650.12 gi|336253009|ref|YP_004596116.1| - 4.7e-06 26.0 1.9 0.002 17.6 0.1 2.5 2 1 0 2 2 2 2 KH domain KH_4 PF13083.1 gi|336253009|ref|YP_004596116.1| - 0.17 11.5 5.8 4 7.1 0.2 3.0 2 2 1 3 3 3 0 KH domain Cpn60_TCP1 PF00118.19 gi|336253010|ref|YP_004596117.1| - 1.5e-164 548.2 5.8 1.7e-164 548.0 4.0 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family OCD_Mu_crystall PF02423.10 gi|336253011|ref|YP_004596118.1| - 1e-90 303.6 1.9 1.2e-90 303.5 1.3 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.15 gi|336253011|ref|YP_004596118.1| - 0.0018 18.3 0.0 0.0041 17.2 0.0 1.6 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase GFO_IDH_MocA PF01408.17 gi|336253011|ref|YP_004596118.1| - 0.015 15.8 0.1 0.044 14.3 0.0 1.9 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold TrkA_N PF02254.13 gi|336253011|ref|YP_004596118.1| - 0.58 10.1 4.0 1.7 8.6 0.1 2.5 3 0 0 3 3 3 0 TrkA-N domain Sugar_tr PF00083.19 gi|336253012|ref|YP_004596119.1| - 3.3e-131 437.9 21.5 3.8e-131 437.7 14.9 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.11 gi|336253012|ref|YP_004596119.1| - 2.1e-45 154.9 69.6 4.2e-36 124.3 27.3 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily TRI12 PF06609.8 gi|336253012|ref|YP_004596119.1| - 8.9e-08 30.7 3.4 8.9e-08 30.7 2.4 2.1 1 1 1 2 2 2 2 Fungal trichothecene efflux pump (TRI12) MFS_3 PF05977.8 gi|336253012|ref|YP_004596119.1| - 0.0044 15.1 4.1 0.0044 15.1 2.9 2.2 2 0 0 2 2 2 1 Transmembrane secretion effector OATP PF03137.15 gi|336253012|ref|YP_004596119.1| - 0.013 13.6 6.4 0.17 9.9 0.0 2.7 1 1 1 3 3 3 0 Organic Anion Transporter Polypeptide (OATP) family MFS_1_like PF12832.2 gi|336253012|ref|YP_004596119.1| - 0.014 15.1 8.6 0.22 11.3 0.0 4.0 4 1 0 4 4 4 0 MFS_1 like family Gly-zipper_Omp PF13488.1 gi|336253012|ref|YP_004596119.1| - 0.015 14.9 4.1 0.082 12.5 2.9 2.4 1 0 0 1 1 1 0 Glycine zipper Gly-zipper_YMGG PF13441.1 gi|336253012|ref|YP_004596119.1| - 0.024 14.1 3.3 0.13 11.8 2.3 2.3 1 0 0 1 1 1 0 YMGG-like Gly-zipper Rick_17kDa_Anti PF05433.10 gi|336253012|ref|YP_004596119.1| - 0.43 10.2 9.0 0.052 13.2 2.8 2.1 2 0 0 2 2 2 0 Glycine zipper 2TM domain Gly-zipper_OmpA PF13436.1 gi|336253012|ref|YP_004596119.1| - 1.4 8.6 3.2 2.5 7.8 0.5 2.4 3 0 0 3 3 3 0 Glycine-zipper containing OmpA-like membrane domain DUF2071 PF09844.4 gi|336253013|ref|YP_004596120.1| - 4.9e-55 186.2 0.0 5.8e-55 186.0 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (COG2071) ADC PF06314.6 gi|336253013|ref|YP_004596120.1| - 1e-05 25.0 0.1 3.1e-05 23.4 0.0 1.9 1 1 0 1 1 1 1 Acetoacetate decarboxylase (ADC) TFIIB PF00382.14 gi|336253014|ref|YP_004596121.1| - 2.2e-25 88.2 1.8 1.1e-15 57.1 0.3 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|336253014|ref|YP_004596121.1| - 4.3e-10 38.7 4.1 6.7e-10 38.1 2.9 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding DZR PF12773.2 gi|336253014|ref|YP_004596121.1| - 0.0044 16.7 1.0 0.0088 15.8 0.7 1.4 1 0 0 1 1 1 1 Double zinc ribbon Prok-RING_1 PF14446.1 gi|336253014|ref|YP_004596121.1| - 0.016 14.9 1.4 0.037 13.7 1.0 1.5 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zinc-ribbons_6 PF07191.7 gi|336253014|ref|YP_004596121.1| - 0.023 14.4 0.7 0.04 13.7 0.5 1.3 1 0 0 1 1 1 0 zinc-ribbons OrfB_Zn_ribbon PF07282.6 gi|336253014|ref|YP_004596121.1| - 0.07 12.8 1.4 0.17 11.5 0.9 1.6 1 0 0 1 1 1 0 Putative transposase DNA-binding domain RB_B PF01857.15 gi|336253014|ref|YP_004596121.1| - 0.11 11.9 0.0 0.17 11.3 0.0 1.2 1 0 0 1 1 1 0 Retinoblastoma-associated protein B domain HypA PF01155.14 gi|336253014|ref|YP_004596121.1| - 0.2 11.3 1.7 1.9 8.2 0.5 2.5 2 1 1 3 3 3 0 Hydrogenase expression/synthesis hypA family Zn-ribbon_8 PF09723.5 gi|336253014|ref|YP_004596121.1| - 1.5 8.7 4.6 11 6.0 0.2 2.8 1 1 1 2 2 2 0 Zinc ribbon domain MCM PF00493.18 gi|336253015|ref|YP_004596122.1| - 5.1e-130 433.0 0.0 6.7e-130 432.7 0.0 1.1 1 0 0 1 1 1 1 MCM2/3/5 family MCM_N PF14551.1 gi|336253015|ref|YP_004596122.1| - 1e-16 61.4 4.3 2.6e-16 60.2 0.2 2.9 2 1 0 2 2 2 1 MCM N-terminal domain Mg_chelatase PF01078.16 gi|336253015|ref|YP_004596122.1| - 8.3e-10 38.1 0.0 9.5e-06 24.9 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_5 PF07728.9 gi|336253015|ref|YP_004596122.1| - 5.1e-06 26.2 0.0 1.4e-05 24.8 0.0 1.8 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.21 gi|336253015|ref|YP_004596122.1| - 0.0014 18.1 0.1 0.028 13.9 0.0 2.3 1 1 0 1 1 1 1 Sigma-54 interaction domain Upf2 PF04050.9 gi|336253015|ref|YP_004596122.1| - 0.01 15.6 1.5 0.01 15.6 1.0 2.1 2 0 0 2 2 2 1 Up-frameshift suppressor 2 AAA PF00004.24 gi|336253015|ref|YP_004596122.1| - 0.033 14.3 0.2 0.18 12.0 0.0 2.4 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) GTPase_Cys_C PF12631.2 gi|336253015|ref|YP_004596122.1| - 0.044 14.1 0.3 46 4.5 0.0 3.5 3 0 0 3 3 3 0 Catalytic cysteine-containing C-terminus of GTPase, MnmE AAA_16 PF13191.1 gi|336253015|ref|YP_004596122.1| - 0.046 13.7 0.8 0.47 10.4 0.0 2.6 2 0 0 2 2 2 0 AAA ATPase domain AAA_3 PF07726.6 gi|336253015|ref|YP_004596122.1| - 0.05 13.2 0.0 0.21 11.1 0.0 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|336253015|ref|YP_004596122.1| - 0.093 12.8 0.0 0.4 10.8 0.0 2.1 1 1 0 1 1 1 0 AAA domain Zn-ribbon_8 PF09723.5 gi|336253015|ref|YP_004596122.1| - 0.16 11.9 2.3 0.4 10.6 1.6 1.6 1 0 0 1 1 1 0 Zinc ribbon domain DUF502 PF04367.8 gi|336253016|ref|YP_004596123.1| - 3.2e-22 78.3 1.6 3.5e-22 78.2 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF502) zf-CSL PF05207.8 gi|336253017|ref|YP_004596124.1| - 0.083 12.4 0.9 1.8 8.1 0.2 2.2 2 1 0 2 2 2 0 CSL zinc finger DUF2072 PF09845.4 gi|336253017|ref|YP_004596124.1| - 0.096 12.6 0.3 0.15 11.9 0.2 1.4 1 1 0 1 1 1 0 Zn-ribbon containing protein (DUF2072) Aldo_ket_red PF00248.16 gi|336253018|ref|YP_004596125.1| - 5.1e-65 219.0 0.0 6.1e-65 218.8 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family HTH_Tnp_1 PF01527.15 gi|336253018|ref|YP_004596125.1| - 0.0016 18.3 0.1 3.3 7.7 0.0 3.4 3 0 0 3 3 3 2 Transposase BofA PF07441.6 gi|336253019|ref|YP_004596126.1| - 0.00038 20.3 19.0 0.00048 20.0 13.2 1.2 1 0 0 1 1 1 1 SigmaK-factor processing regulatory protein BofA 7TMR-DISM_7TM PF07695.6 gi|336253020|ref|YP_004596127.1| - 0.0035 17.0 0.5 0.0041 16.8 0.3 1.0 1 0 0 1 1 1 1 7TM diverse intracellular signalling Herpes_LMP1 PF05297.6 gi|336253020|ref|YP_004596127.1| - 0.028 13.3 0.2 0.031 13.2 0.1 1.1 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) MBOAT PF03062.14 gi|336253020|ref|YP_004596127.1| - 0.029 13.5 0.8 0.035 13.2 0.5 1.1 1 0 0 1 1 1 0 MBOAT, membrane-bound O-acyltransferase family DUF4131 PF13567.1 gi|336253020|ref|YP_004596127.1| - 0.041 13.3 0.5 0.04 13.3 0.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF4175 PF13779.1 gi|336253020|ref|YP_004596127.1| - 0.044 11.4 0.7 0.044 11.5 0.5 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4175) Conotoxin PF02950.12 gi|336253020|ref|YP_004596127.1| - 0.099 13.4 0.2 1.8 9.4 0.0 2.2 2 0 0 2 2 2 0 Conotoxin DUF1469 PF07332.6 gi|336253020|ref|YP_004596127.1| - 1.4 8.6 9.1 1.9 8.2 6.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) DUF2721 PF11026.3 gi|336253020|ref|YP_004596127.1| - 1.5 8.4 5.6 1.9 8.1 3.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2721) DUF2299 PF10061.4 gi|336253021|ref|YP_004596128.1| - 0.031 13.7 0.0 0.046 13.1 0.0 1.3 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2299) LRV PF01816.12 gi|336253021|ref|YP_004596128.1| - 0.22 11.7 2.2 15 6.0 0.1 2.5 2 0 0 2 2 2 0 Leucine rich repeat variant DEAD PF00270.24 gi|336253022|ref|YP_004596129.1| - 4.6e-24 84.7 0.0 1.1e-23 83.5 0.0 1.6 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|336253022|ref|YP_004596129.1| - 2.9e-13 49.4 0.0 6.6e-13 48.3 0.0 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|336253022|ref|YP_004596129.1| - 2.9e-07 30.5 0.0 1e-06 28.7 0.0 1.8 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit SNF2_N PF00176.18 gi|336253022|ref|YP_004596129.1| - 0.047 12.4 0.0 0.07 11.9 0.0 1.4 1 0 0 1 1 1 0 SNF2 family N-terminal domain MCPsignal PF00015.16 gi|336253023|ref|YP_004596130.1| - 1.6e-36 125.9 66.3 1.7e-35 122.5 27.0 3.6 1 1 2 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.20 gi|336253023|ref|YP_004596130.1| - 6.2e-13 48.7 1.3 6.2e-13 48.7 0.9 5.4 6 0 0 6 6 6 2 HAMP domain AAA_13 PF13166.1 gi|336253023|ref|YP_004596130.1| - 0.0041 15.6 24.4 0.071 11.5 3.3 2.2 1 1 1 2 2 2 2 AAA domain Tropomyosin_1 PF12718.2 gi|336253023|ref|YP_004596130.1| - 0.0045 16.8 8.7 0.0045 16.8 6.0 4.2 1 1 3 4 4 4 1 Tropomyosin like Laminin_II PF06009.7 gi|336253023|ref|YP_004596130.1| - 0.18 11.5 31.4 0.18 11.5 1.5 5.3 3 2 2 5 5 5 0 Laminin Domain II CorA PF01544.13 gi|336253023|ref|YP_004596130.1| - 2.8 6.8 22.0 0.94 8.4 3.8 3.7 3 1 0 3 3 3 0 CorA-like Mg2+ transporter protein Seryl_tRNA_N PF02403.17 gi|336253023|ref|YP_004596130.1| - 6.7 6.7 30.2 0.12 12.4 3.4 5.0 2 1 3 6 6 6 0 Seryl-tRNA synthetase N-terminal domain eIF3_N PF09440.5 gi|336253023|ref|YP_004596130.1| - 6.8 6.8 17.4 5.9 7.0 0.5 3.8 3 1 0 3 3 3 0 eIF3 subunit 6 N terminal domain DUF948 PF06103.6 gi|336253023|ref|YP_004596130.1| - 7.9 6.4 17.2 5.7 6.8 0.6 5.3 3 2 2 5 5 5 0 Bacterial protein of unknown function (DUF948) Peripla_BP_2 PF01497.13 gi|336253024|ref|YP_004596131.1| - 2.1e-21 76.1 0.2 2.8e-21 75.7 0.1 1.2 1 0 0 1 1 1 1 Periplasmic binding protein SHNi-TPR PF10516.4 gi|336253024|ref|YP_004596131.1| - 0.094 11.9 0.1 0.19 11.0 0.1 1.5 1 0 0 1 1 1 0 SHNi-TPR TP6A_N PF04406.9 gi|336253024|ref|YP_004596131.1| - 0.14 11.8 0.0 0.36 10.5 0.0 1.6 1 0 0 1 1 1 0 Type IIB DNA topoisomerase TAT_signal PF10518.4 gi|336253024|ref|YP_004596131.1| - 0.31 11.1 3.0 0.59 10.2 2.1 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence ABC_tran PF00005.22 gi|336253025|ref|YP_004596132.1| - 7e-31 107.3 0.0 1e-30 106.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|336253025|ref|YP_004596132.1| - 3.9e-13 50.0 0.2 3.3e-10 40.4 0.1 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|336253025|ref|YP_004596132.1| - 1.2e-11 44.2 0.2 4.3e-09 35.9 0.2 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|336253025|ref|YP_004596132.1| - 9e-07 28.3 0.0 2e-06 27.2 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_ATPase PF09818.4 gi|336253025|ref|YP_004596132.1| - 1.2e-06 27.3 0.1 0.0078 14.8 0.0 3.0 2 1 0 2 2 2 2 Predicted ATPase of the ABC class AAA_17 PF13207.1 gi|336253025|ref|YP_004596132.1| - 5.8e-06 27.1 0.0 1.1e-05 26.1 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|336253025|ref|YP_004596132.1| - 6.9e-06 26.2 0.3 5.9e-05 23.2 0.2 2.0 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|336253025|ref|YP_004596132.1| - 1.1e-05 24.7 0.0 0.064 12.2 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_16 PF13191.1 gi|336253025|ref|YP_004596132.1| - 3.1e-05 24.0 1.3 0.00016 21.6 0.9 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.1 gi|336253025|ref|YP_004596132.1| - 3.9e-05 23.1 0.3 0.00035 20.0 0.2 2.3 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|336253025|ref|YP_004596132.1| - 8.5e-05 22.9 0.0 9.7e-05 22.7 0.0 1.3 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|336253025|ref|YP_004596132.1| - 0.00045 20.0 0.0 0.0011 18.7 0.0 1.8 1 1 0 1 1 1 1 AAA domain ATP_bind_1 PF03029.12 gi|336253025|ref|YP_004596132.1| - 0.00074 19.1 0.1 0.024 14.1 0.0 2.2 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.7 gi|336253025|ref|YP_004596132.1| - 0.0009 18.3 0.0 0.0017 17.5 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin DUF258 PF03193.11 gi|336253025|ref|YP_004596132.1| - 0.00097 18.3 0.0 0.0019 17.3 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_14 PF13173.1 gi|336253025|ref|YP_004596132.1| - 0.0026 17.6 0.0 0.0086 15.9 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|336253025|ref|YP_004596132.1| - 0.0036 17.6 0.0 0.0066 16.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain Mg_chelatase PF01078.16 gi|336253025|ref|YP_004596132.1| - 0.0037 16.4 0.1 2.3 7.3 0.0 2.2 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI HD PF01966.17 gi|336253025|ref|YP_004596132.1| - 0.004 17.1 0.1 0.011 15.7 0.0 1.6 1 0 0 1 1 1 1 HD domain AAA_30 PF13604.1 gi|336253025|ref|YP_004596132.1| - 0.0053 16.3 0.0 0.015 14.8 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|336253025|ref|YP_004596132.1| - 0.016 15.4 0.0 0.039 14.1 0.0 1.7 2 0 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.10 gi|336253025|ref|YP_004596132.1| - 0.029 13.0 0.0 0.043 12.5 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_28 PF13521.1 gi|336253025|ref|YP_004596132.1| - 0.047 13.6 0.0 0.11 12.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain DUF2813 PF11398.3 gi|336253025|ref|YP_004596132.1| - 0.051 12.6 0.0 0.073 12.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2813) MobB PF03205.9 gi|336253025|ref|YP_004596132.1| - 0.052 13.2 0.0 0.18 11.5 0.0 1.9 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B SbcCD_C PF13558.1 gi|336253025|ref|YP_004596132.1| - 0.055 13.3 0.2 0.59 10.0 0.1 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_5 PF07728.9 gi|336253025|ref|YP_004596132.1| - 0.063 13.0 0.0 0.15 11.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_10 PF12846.2 gi|336253025|ref|YP_004596132.1| - 0.065 12.6 0.1 0.21 10.9 0.0 1.7 2 0 0 2 2 2 0 AAA-like domain UPF0079 PF02367.12 gi|336253025|ref|YP_004596132.1| - 0.072 12.7 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 NACHT PF05729.7 gi|336253025|ref|YP_004596132.1| - 0.073 12.7 0.1 0.2 11.3 0.0 1.7 2 0 0 2 2 2 0 NACHT domain T2SE PF00437.15 gi|336253025|ref|YP_004596132.1| - 0.076 11.8 0.0 0.12 11.3 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein RNA_helicase PF00910.17 gi|336253025|ref|YP_004596132.1| - 0.077 13.1 0.0 0.14 12.3 0.0 1.4 1 0 0 1 1 1 0 RNA helicase cobW PF02492.14 gi|336253025|ref|YP_004596132.1| - 0.086 12.2 0.1 0.48 9.8 0.0 2.0 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain MukB PF04310.7 gi|336253025|ref|YP_004596132.1| - 0.097 11.9 0.0 0.16 11.2 0.0 1.3 1 0 0 1 1 1 0 MukB N-terminal DUF815 PF05673.8 gi|336253025|ref|YP_004596132.1| - 0.13 11.1 0.0 0.24 10.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) MMR_HSR1 PF01926.18 gi|336253025|ref|YP_004596132.1| - 0.14 12.1 0.1 0.3 11.0 0.1 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase Arch_ATPase PF01637.13 gi|336253025|ref|YP_004596132.1| - 0.15 11.7 0.0 0.26 10.9 0.0 1.5 2 0 0 2 2 1 0 Archaeal ATPase FecCD PF01032.13 gi|336253026|ref|YP_004596133.1| - 4.5e-85 285.1 37.0 5.8e-85 284.8 25.7 1.1 1 0 0 1 1 1 1 FecCD transport family Cupin_2 PF07883.6 gi|336253027|ref|YP_004596134.1| - 3.7e-18 64.8 0.3 5.3e-18 64.2 0.2 1.3 1 0 0 1 1 1 1 Cupin domain Cupin_1 PF00190.17 gi|336253027|ref|YP_004596134.1| - 2.4e-10 40.0 0.0 3.5e-10 39.4 0.0 1.2 1 0 0 1 1 1 1 Cupin AraC_binding PF02311.14 gi|336253027|ref|YP_004596134.1| - 3.7e-06 26.6 0.0 5.1e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain MannoseP_isomer PF01050.13 gi|336253027|ref|YP_004596134.1| - 0.00032 20.3 0.0 0.00042 19.9 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase CENP-C_C PF11699.3 gi|336253027|ref|YP_004596134.1| - 0.0017 18.2 0.0 0.0023 17.8 0.0 1.2 1 0 0 1 1 1 1 Mif2/CENP-C like Cupin_3 PF05899.7 gi|336253027|ref|YP_004596134.1| - 0.015 14.6 0.0 0.024 14.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF861) Cupin_6 PF12852.2 gi|336253027|ref|YP_004596134.1| - 0.021 14.4 0.0 0.029 13.9 0.0 1.3 1 0 0 1 1 1 0 Cupin ARD PF03079.9 gi|336253027|ref|YP_004596134.1| - 0.027 14.3 0.0 0.038 13.9 0.0 1.2 1 0 0 1 1 1 0 ARD/ARD' family CSD PF00313.17 gi|336253028|ref|YP_004596135.1| - 1.4e-20 72.7 0.1 1.6e-20 72.6 0.0 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain S1-like PF14444.1 gi|336253028|ref|YP_004596135.1| - 0.024 14.3 0.2 0.03 14.0 0.1 1.4 1 1 0 1 1 1 0 S1-like OB_RNB PF08206.6 gi|336253028|ref|YP_004596135.1| - 0.033 13.6 2.2 0.042 13.3 1.6 1.2 1 0 0 1 1 1 0 Ribonuclease B OB domain HTH_24 PF13412.1 gi|336253029|ref|YP_004596136.1| - 3e-15 55.3 0.4 4.8e-15 54.6 0.3 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|336253029|ref|YP_004596136.1| - 1.4e-10 40.5 1.6 2.3e-10 39.8 1.1 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.7 gi|336253029|ref|YP_004596136.1| - 6e-09 35.4 0.1 1.4e-08 34.2 0.1 1.6 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.2 gi|336253029|ref|YP_004596136.1| - 1.1e-06 28.1 0.0 2.5e-06 27.0 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|336253029|ref|YP_004596136.1| - 6.3e-06 25.6 0.0 1.1e-05 24.9 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain Fe_dep_repress PF01325.14 gi|336253029|ref|YP_004596136.1| - 8.5e-06 25.6 0.1 4.1e-05 23.4 0.1 2.0 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_20 PF12840.2 gi|336253029|ref|YP_004596136.1| - 1.1e-05 25.0 0.0 2.7e-05 23.8 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|336253029|ref|YP_004596136.1| - 7.8e-05 22.2 0.0 0.00015 21.3 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Rrf2 PF02082.15 gi|336253029|ref|YP_004596136.1| - 0.00017 21.6 0.0 0.00035 20.6 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator Sigma70_r4_2 PF08281.7 gi|336253029|ref|YP_004596136.1| - 0.00018 20.8 0.2 0.00035 19.9 0.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_DeoR PF08220.7 gi|336253029|ref|YP_004596136.1| - 0.00054 19.4 0.1 0.0041 16.6 0.0 2.1 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_12 PF08461.5 gi|336253029|ref|YP_004596136.1| - 0.0019 17.8 0.5 0.014 15.1 0.2 2.4 2 1 0 2 2 2 1 Ribonuclease R winged-helix domain DUF2250 PF10007.4 gi|336253029|ref|YP_004596136.1| - 0.0021 17.9 0.1 0.027 14.3 0.0 2.1 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) GntR PF00392.16 gi|336253029|ref|YP_004596136.1| - 0.0028 17.0 0.1 0.0047 16.3 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family TrmB PF01978.14 gi|336253029|ref|YP_004596136.1| - 0.0031 17.1 0.2 0.006 16.2 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HrcA_DNA-bdg PF03444.10 gi|336253029|ref|YP_004596136.1| - 0.0047 16.3 0.0 0.0078 15.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding MarR PF01047.17 gi|336253029|ref|YP_004596136.1| - 0.0057 16.3 0.0 0.01 15.4 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|336253029|ref|YP_004596136.1| - 0.0061 16.8 0.0 0.013 15.8 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_Mga PF08280.6 gi|336253029|ref|YP_004596136.1| - 0.0079 15.9 0.0 0.014 15.1 0.0 1.4 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_23 PF13384.1 gi|336253029|ref|YP_004596136.1| - 0.0092 15.6 0.1 0.017 14.7 0.1 1.4 1 0 0 1 1 1 1 Homeodomain-like domain Nuc_N PF14448.1 gi|336253029|ref|YP_004596136.1| - 0.014 14.9 1.1 0.032 13.7 0.2 1.9 2 0 0 2 2 2 0 Nuclease N terminal Sigma70_r4 PF04545.11 gi|336253029|ref|YP_004596136.1| - 0.018 14.3 0.4 0.034 13.4 0.3 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_38 PF13936.1 gi|336253029|ref|YP_004596136.1| - 0.022 14.3 0.7 0.047 13.2 0.5 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_28 PF13518.1 gi|336253029|ref|YP_004596136.1| - 0.023 14.7 0.1 0.04 13.9 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain RPA_C PF08784.6 gi|336253029|ref|YP_004596136.1| - 0.038 14.4 0.0 0.22 11.9 0.0 1.9 2 0 0 2 2 2 0 Replication protein A C terminal Put_DNA-bind_N PF06971.8 gi|336253029|ref|YP_004596136.1| - 0.055 13.2 0.4 0.12 12.2 0.2 1.5 1 0 0 1 1 1 0 Putative DNA-binding protein N-terminus AsnC_trans_reg PF01037.16 gi|336253029|ref|YP_004596136.1| - 0.12 12.0 0.0 0.27 10.9 0.0 1.5 1 0 0 1 1 1 0 AsnC family DUF2513 PF10711.4 gi|336253029|ref|YP_004596136.1| - 0.13 12.4 0.0 0.23 11.5 0.0 1.4 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) Oxidored_q1 PF00361.15 gi|336253030|ref|YP_004596137.1| - 7.4e-36 123.8 10.0 7.4e-36 123.8 7.0 1.7 2 0 0 2 2 2 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|336253030|ref|YP_004596137.1| - 1.5e-07 30.8 0.3 1.5e-07 30.8 0.2 3.3 5 0 0 5 5 5 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus OCIA PF07051.6 gi|336253030|ref|YP_004596137.1| - 0.041 13.2 1.6 0.24 10.8 0.1 2.6 2 1 1 3 3 3 0 Ovarian carcinoma immunoreactive antigen (OCIA) DUF2309 PF10070.4 gi|336253031|ref|YP_004596138.1| - 4.4e-259 861.8 0.0 5.3e-259 861.5 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2309) YqzM PF14141.1 gi|336253032|ref|YP_004596139.1| - 0.084 12.6 9.5 0.69 9.7 0.9 2.1 2 0 0 2 2 2 0 YqzM-like protein YjgP_YjgQ PF03739.9 gi|336253032|ref|YP_004596139.1| - 0.11 11.2 1.9 0.11 11.1 1.3 1.0 1 0 0 1 1 1 0 Predicted permease YjgP/YjgQ family FixQ PF05545.6 gi|336253032|ref|YP_004596139.1| - 0.14 11.7 4.9 1.6 8.4 0.1 2.2 2 0 0 2 2 2 0 Cbb3-type cytochrome oxidase component FixQ MtrF PF09472.5 gi|336253032|ref|YP_004596139.1| - 0.72 9.1 10.2 1.1 8.6 0.8 2.1 2 0 0 2 2 2 0 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) DUF2207 PF09972.4 gi|336253032|ref|YP_004596139.1| - 0.76 8.2 2.7 0.82 8.1 1.8 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) UPF0104 PF03706.8 gi|336253032|ref|YP_004596139.1| - 1.3 8.1 9.5 2.1 7.5 6.6 1.4 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0104) NDUF_B12 PF08122.7 gi|336253032|ref|YP_004596139.1| - 1.9 8.3 4.8 13 5.5 0.0 2.2 2 0 0 2 2 2 0 NADH-ubiquinone oxidoreductase B12 subunit family DUF1049 PF06305.6 gi|336253032|ref|YP_004596139.1| - 3.1 7.3 5.9 5.5 6.5 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1049) Pro_CA PF00484.14 gi|336253033|ref|YP_004596140.1| - 3.7e-26 91.9 0.1 5.2e-26 91.4 0.0 1.1 1 0 0 1 1 1 1 Carbonic anhydrase ADH_zinc_N PF00107.21 gi|336253034|ref|YP_004596141.1| - 3.5e-23 81.5 0.0 5.4e-23 80.9 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|336253034|ref|YP_004596141.1| - 2.7e-08 34.7 0.0 9.1e-08 33.0 0.0 1.8 2 0 0 2 2 2 1 Zinc-binding dehydrogenase Abhydrolase_6 PF12697.2 gi|336253035|ref|YP_004596142.1| - 6e-29 101.5 7.1 7.8e-29 101.1 4.9 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|336253035|ref|YP_004596142.1| - 4.9e-15 55.7 0.0 8.6e-15 54.9 0.0 1.3 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|336253035|ref|YP_004596142.1| - 3.1e-14 52.9 0.0 5.3e-14 52.1 0.0 1.4 1 1 0 1 1 1 1 Alpha/beta hydrolase family Esterase PF00756.15 gi|336253035|ref|YP_004596142.1| - 0.015 14.7 0.0 0.017 14.5 0.0 1.2 1 0 0 1 1 1 0 Putative esterase Esterase_phd PF10503.4 gi|336253035|ref|YP_004596142.1| - 0.057 12.6 0.6 0.71 9.0 0.1 2.4 2 1 0 2 2 2 0 Esterase PHB depolymerase DUF2306 PF10067.4 gi|336253036|ref|YP_004596143.1| - 0.34 11.0 1.7 0.37 10.9 1.2 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2306) DUF2484 PF10658.4 gi|336253036|ref|YP_004596143.1| - 0.71 10.0 5.6 1.4 9.1 3.8 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2484) DUF2244 PF10003.4 gi|336253036|ref|YP_004596143.1| - 0.8 9.0 5.4 0.92 8.8 3.7 1.0 1 0 0 1 1 1 0 Integral membrane protein (DUF2244) ABC2_membrane PF01061.19 gi|336253037|ref|YP_004596144.1| - 2.5e-29 101.9 15.4 3.3e-29 101.5 10.6 1.2 1 0 0 1 1 1 1 ABC-2 type transporter CcmB PF03379.8 gi|336253037|ref|YP_004596144.1| - 0.016 14.4 5.5 0.036 13.2 3.6 1.7 1 1 0 1 1 1 0 CcmB protein ABC2_membrane_3 PF12698.2 gi|336253037|ref|YP_004596144.1| - 0.046 12.7 21.0 0.016 14.2 12.8 1.4 1 1 0 1 1 1 0 ABC-2 family transporter protein ABC_tran PF00005.22 gi|336253038|ref|YP_004596145.1| - 1.7e-30 106.0 0.0 2.7e-30 105.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|336253038|ref|YP_004596145.1| - 9.5e-16 58.5 0.2 3.9e-10 40.1 0.0 2.2 1 1 1 2 2 2 2 AAA domain DUF4162 PF13732.1 gi|336253038|ref|YP_004596145.1| - 1.7e-05 25.1 0.0 4e-05 24.0 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_10 PF12846.2 gi|336253038|ref|YP_004596145.1| - 0.00021 20.8 0.0 0.00041 19.9 0.0 1.4 1 0 0 1 1 1 1 AAA-like domain IstB_IS21 PF01695.12 gi|336253038|ref|YP_004596145.1| - 0.0023 17.3 0.3 0.53 9.6 0.0 2.3 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_23 PF13476.1 gi|336253038|ref|YP_004596145.1| - 0.0051 17.1 0.2 0.019 15.2 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.1 gi|336253038|ref|YP_004596145.1| - 0.01 15.4 0.0 0.051 13.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain SMC_N PF02463.14 gi|336253038|ref|YP_004596145.1| - 0.011 14.9 0.0 1.3 8.2 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|336253038|ref|YP_004596145.1| - 0.014 14.5 0.0 0.031 13.4 0.0 1.5 2 0 0 2 2 2 0 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|336253038|ref|YP_004596145.1| - 0.018 14.5 0.1 0.039 13.4 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Arch_ATPase PF01637.13 gi|336253038|ref|YP_004596145.1| - 0.023 14.3 0.0 0.048 13.3 0.0 1.5 1 0 0 1 1 1 0 Archaeal ATPase ATP_bind_1 PF03029.12 gi|336253038|ref|YP_004596145.1| - 0.037 13.5 0.0 0.22 11.0 0.0 1.9 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein UPF0079 PF02367.12 gi|336253038|ref|YP_004596145.1| - 0.038 13.6 0.0 0.074 12.6 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_25 PF13481.1 gi|336253038|ref|YP_004596145.1| - 0.057 12.8 0.2 0.2 11.0 0.1 2.0 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|336253038|ref|YP_004596145.1| - 0.078 12.9 0.1 0.25 11.2 0.1 2.0 1 1 0 1 1 1 0 AAA ATPase domain AAA_33 PF13671.1 gi|336253038|ref|YP_004596145.1| - 0.091 12.6 0.1 0.19 11.6 0.1 1.8 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.10 gi|336253038|ref|YP_004596145.1| - 0.11 12.2 0.2 1.9 8.1 0.0 2.4 2 1 1 3 3 3 0 NTPase MMR_HSR1 PF01926.18 gi|336253038|ref|YP_004596145.1| - 0.12 12.3 0.0 0.28 11.1 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase SRP54 PF00448.17 gi|336253038|ref|YP_004596145.1| - 0.13 11.6 0.0 0.23 10.8 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_22 PF13401.1 gi|336253038|ref|YP_004596145.1| - 0.17 12.0 0.3 1.1 9.3 0.2 2.2 1 1 0 1 1 1 0 AAA domain CBS PF00571.23 gi|336253039|ref|YP_004596146.1| - 1.2e-27 95.4 3.7 5.5e-14 51.6 0.4 2.4 2 0 0 2 2 2 2 CBS domain Peptidase_M50 PF02163.17 gi|336253039|ref|YP_004596146.1| - 1.3e-22 79.6 10.2 2.5e-16 59.2 2.6 2.9 1 1 2 3 3 3 2 Peptidase family M50 Peptidase_M50B PF13398.1 gi|336253039|ref|YP_004596146.1| - 0.00036 19.9 1.4 0.00036 19.9 0.9 2.4 2 1 1 3 3 3 1 Peptidase M50B-like Peptidase_MA_2 PF13485.1 gi|336253039|ref|YP_004596146.1| - 0.01 15.8 0.0 0.02 14.9 0.0 1.4 1 0 0 1 1 1 0 Peptidase MA superfamily TrmB PF01978.14 gi|336253040|ref|YP_004596147.1| - 4e-06 26.4 0.0 7.7e-06 25.5 0.0 1.5 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|336253040|ref|YP_004596147.1| - 1.8e-05 24.3 0.1 2.2e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|336253040|ref|YP_004596147.1| - 0.00022 20.8 0.0 0.00031 20.3 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|336253040|ref|YP_004596147.1| - 0.0018 17.8 0.3 0.0025 17.3 0.2 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_27 PF13463.1 gi|336253040|ref|YP_004596147.1| - 0.0047 17.2 0.0 0.0071 16.6 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain FeoC PF09012.5 gi|336253040|ref|YP_004596147.1| - 0.043 13.5 0.0 0.057 13.1 0.0 1.2 1 0 0 1 1 1 0 FeoC like transcriptional regulator HTH_5 PF01022.15 gi|336253040|ref|YP_004596147.1| - 0.046 13.4 0.1 0.071 12.7 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family B-block_TFIIIC PF04182.7 gi|336253040|ref|YP_004596147.1| - 0.065 13.0 0.0 0.093 12.5 0.0 1.2 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC Rrf2 PF02082.15 gi|336253040|ref|YP_004596147.1| - 0.096 12.8 0.0 0.13 12.4 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator z-alpha PF02295.12 gi|336253040|ref|YP_004596147.1| - 0.11 12.3 0.0 0.14 11.9 0.0 1.1 1 0 0 1 1 1 0 Adenosine deaminase z-alpha domain LexA_DNA_bind PF01726.11 gi|336253040|ref|YP_004596147.1| - 0.13 11.7 0.0 0.19 11.3 0.0 1.3 1 0 0 1 1 1 0 LexA DNA binding domain HTH_20 PF12840.2 gi|336253040|ref|YP_004596147.1| - 0.14 12.0 0.1 0.19 11.5 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Ribosomal_L16 PF00252.13 gi|336253041|ref|YP_004596148.1| - 1.1e-31 109.3 0.0 1.2e-31 109.1 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e DUF2157 PF09925.4 gi|336253042|ref|YP_004596149.1| - 0.075 12.6 0.9 0.096 12.2 0.6 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2157) DUF3815 PF12821.2 gi|336253042|ref|YP_004596149.1| - 0.076 12.9 2.8 0.1 12.5 1.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3815) DUF2788 PF10981.3 gi|336253042|ref|YP_004596149.1| - 0.084 12.6 0.8 0.084 12.6 0.6 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2788) DUF4407 PF14362.1 gi|336253042|ref|YP_004596149.1| - 0.18 10.7 1.7 0.2 10.5 1.2 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) DUF1212 PF06738.7 gi|336253042|ref|YP_004596149.1| - 0.99 8.8 4.6 1.2 8.5 3.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1212) RimK PF08443.6 gi|336253043|ref|YP_004596150.1| - 1.2e-25 90.1 0.0 1.7e-25 89.6 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_4 PF13535.1 gi|336253043|ref|YP_004596150.1| - 4e-16 59.2 0.1 5.8e-16 58.7 0.1 1.2 1 0 0 1 1 1 1 ATP-grasp domain GSH-S_ATP PF02955.11 gi|336253043|ref|YP_004596150.1| - 4.1e-12 45.5 0.0 6.1e-12 45.0 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.9 gi|336253043|ref|YP_004596150.1| - 1.3e-06 28.4 0.0 2.4e-06 27.5 0.0 1.4 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|336253043|ref|YP_004596150.1| - 2.2e-06 26.6 0.0 3.7e-06 25.9 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon Dala_Dala_lig_C PF07478.8 gi|336253043|ref|YP_004596150.1| - 4e-05 23.1 0.0 8.8e-05 21.9 0.0 1.5 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus ATPgrasp_ST PF14397.1 gi|336253043|ref|YP_004596150.1| - 0.0024 17.0 0.0 0.03 13.4 0.0 2.0 2 0 0 2 2 2 1 Sugar-transfer associated ATP-grasp ATP-grasp PF02222.17 gi|336253043|ref|YP_004596150.1| - 0.0054 16.1 0.0 0.011 15.0 0.0 1.5 1 1 0 1 1 1 1 ATP-grasp domain TTL PF03133.10 gi|336253043|ref|YP_004596150.1| - 0.0063 15.4 0.0 0.032 13.1 0.0 1.8 2 0 0 2 2 2 1 Tubulin-tyrosine ligase family ATPgrasp_TupA PF14305.1 gi|336253043|ref|YP_004596150.1| - 0.017 14.4 0.0 0.49 9.6 0.0 2.1 2 0 0 2 2 2 0 TupA-like ATPgrasp CPSase_L_D2 PF02786.12 gi|336253043|ref|YP_004596150.1| - 0.055 12.7 0.0 0.11 11.8 0.0 1.4 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain PPDK_N PF01326.14 gi|336253043|ref|YP_004596150.1| - 0.1 11.6 0.0 0.19 10.7 0.0 1.5 1 0 0 1 1 1 0 Pyruvate phosphate dikinase, PEP/pyruvate binding domain HSP20 PF00011.16 gi|336253044|ref|YP_004596151.1| - 5.4e-10 39.0 0.1 9.7e-09 35.0 0.1 2.0 1 1 0 1 1 1 1 Hsp20/alpha crystallin family GvpH PF05455.6 gi|336253044|ref|YP_004596151.1| - 2.4e-08 33.8 0.6 3.1e-08 33.4 0.4 1.1 1 0 0 1 1 1 1 GvpH Sipho_Gp37 PF14594.1 gi|336253044|ref|YP_004596151.1| - 0.035 13.3 0.0 0.038 13.2 0.0 1.1 1 0 0 1 1 1 0 Siphovirus ReqiPepy6 Gp37-like protein PIH1 PF08190.7 gi|336253044|ref|YP_004596151.1| - 0.049 13.0 0.0 0.064 12.6 0.0 1.1 1 0 0 1 1 1 0 pre-RNA processing PIH1/Nop17 Gp_dh_C PF02800.15 gi|336253045|ref|YP_004596152.1| - 2.9e-16 59.2 0.0 4.5e-16 58.6 0.0 1.3 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Gp_dh_N PF00044.19 gi|336253045|ref|YP_004596152.1| - 2.9e-15 56.5 0.2 3.7e-14 52.9 0.1 2.2 1 1 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|336253045|ref|YP_004596152.1| - 6.1e-10 39.0 0.0 1.5e-09 37.8 0.0 1.7 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus NAD_binding_3 PF03447.11 gi|336253045|ref|YP_004596152.1| - 0.00012 22.4 0.5 0.00095 19.5 0.3 2.3 2 1 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|336253045|ref|YP_004596152.1| - 0.0014 17.8 0.2 0.066 12.3 0.2 2.3 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|336253045|ref|YP_004596152.1| - 0.0022 18.5 0.3 0.0073 16.8 0.1 2.0 1 1 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold Semialdhyde_dh PF01118.19 gi|336253045|ref|YP_004596152.1| - 0.06 13.6 0.0 0.13 12.5 0.0 1.7 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|336253045|ref|YP_004596152.1| - 0.11 12.4 0.1 0.26 11.3 0.1 1.6 1 0 0 1 1 1 0 TrkA-N domain Gp_dh_C PF02800.15 gi|336253046|ref|YP_004596153.1| - 9.8e-64 213.5 0.0 1.3e-63 213.1 0.0 1.2 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Gp_dh_N PF00044.19 gi|336253046|ref|YP_004596153.1| - 2.9e-54 183.1 0.0 4.2e-54 182.6 0.0 1.2 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|336253046|ref|YP_004596153.1| - 0.0094 15.8 0.0 0.038 13.9 0.0 2.0 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus PGK PF00162.14 gi|336253047|ref|YP_004596154.1| - 1.3e-105 353.1 0.1 1.5e-105 352.9 0.0 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase Cyto_ox_2 PF02322.10 gi|336253048|ref|YP_004596155.1| - 0.0017 17.6 5.0 0.0023 17.1 3.5 1.1 1 0 0 1 1 1 1 Cytochrome oxidase subunit II CcmH PF03918.9 gi|336253048|ref|YP_004596155.1| - 0.042 12.8 0.0 0.086 11.8 0.0 1.5 1 0 0 1 1 1 0 Cytochrome C biogenesis protein CoA_binding_3 PF13727.1 gi|336253048|ref|YP_004596155.1| - 0.2 11.4 1.3 0.33 10.7 0.0 1.8 1 1 1 2 2 2 0 CoA-binding domain Peptidase_M29 PF02073.10 gi|336253049|ref|YP_004596156.1| - 6e-20 71.3 0.2 2.9e-18 65.8 0.1 2.1 2 0 0 2 2 2 2 Thermophilic metalloprotease (M29) HTH_20 PF12840.2 gi|336253050|ref|YP_004596157.1| - 2.5e-05 23.9 0.0 6.1e-05 22.7 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain DZR PF12773.2 gi|336253050|ref|YP_004596157.1| - 0.74 9.6 4.2 12 5.8 0.7 2.7 1 1 2 3 3 3 0 Double zinc ribbon Peptidase_M23 PF01551.17 gi|336253051|ref|YP_004596158.1| - 1.1e-19 70.2 0.0 4.1e-19 68.4 0.0 1.8 2 0 0 2 2 2 1 Peptidase family M23 Lar_restr_allev PF14354.1 gi|336253052|ref|YP_004596159.1| - 0.0027 17.9 1.1 0.0076 16.5 0.8 1.7 1 0 0 1 1 1 1 Restriction alleviation protein Lar UPF0547 PF10571.4 gi|336253052|ref|YP_004596159.1| - 0.0044 16.6 1.3 0.014 15.0 0.9 1.9 1 1 0 1 1 1 1 Uncharacterised protein family UPF0547 zf-DNL PF05180.7 gi|336253052|ref|YP_004596159.1| - 0.026 14.2 0.2 0.053 13.2 0.1 1.5 1 0 0 1 1 1 0 DNL zinc finger DUF2387 PF09526.5 gi|336253052|ref|YP_004596159.1| - 0.099 12.5 1.8 0.24 11.3 1.2 1.7 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) zinc_ribbon_5 PF13719.1 gi|336253052|ref|YP_004596159.1| - 0.22 11.1 5.0 1.3 8.7 3.5 2.1 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|336253052|ref|YP_004596159.1| - 0.3 10.8 4.5 1.9 8.2 3.1 2.2 1 1 0 1 1 1 0 zinc-ribbon domain DUF4137 PF13593.1 gi|336253053|ref|YP_004596160.1| - 1.5e-10 40.7 22.8 7.3e-10 38.4 15.8 1.9 1 1 0 1 1 1 1 SBF-like CPA transporter family (DUF4137) SBF PF01758.11 gi|336253053|ref|YP_004596160.1| - 1.5e-06 27.7 13.4 1.5e-06 27.7 9.3 2.4 2 1 0 2 2 2 1 Sodium Bile acid symporter family Tox-WTIP PF15654.1 gi|336253053|ref|YP_004596160.1| - 0.55 9.9 6.1 6.2 6.5 0.6 2.9 2 0 0 2 2 2 0 Toxin with a conserved tryptophan and TIP tripeptide motif PCMT PF01135.14 gi|336253054|ref|YP_004596161.1| - 1.6e-62 210.7 0.0 1.8e-62 210.5 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_18 PF12847.2 gi|336253054|ref|YP_004596161.1| - 4.5e-10 40.1 0.0 9.5e-10 39.0 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|336253054|ref|YP_004596161.1| - 2.5e-07 30.7 0.0 4.6e-07 29.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|336253054|ref|YP_004596161.1| - 2.8e-06 27.0 0.0 3.7e-06 26.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain GCD14 PF08704.5 gi|336253054|ref|YP_004596161.1| - 0.00011 21.7 0.0 0.00018 21.0 0.0 1.3 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit CMAS PF02353.15 gi|336253054|ref|YP_004596161.1| - 0.00014 21.0 0.0 0.00021 20.5 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase RrnaAD PF00398.15 gi|336253054|ref|YP_004596161.1| - 0.00016 20.7 0.0 0.00024 20.1 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase MTS PF05175.9 gi|336253054|ref|YP_004596161.1| - 0.0028 17.0 0.0 0.0043 16.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Fibrillarin PF01269.12 gi|336253054|ref|YP_004596161.1| - 0.013 14.4 0.0 0.019 13.8 0.0 1.1 1 0 0 1 1 1 0 Fibrillarin DUF938 PF06080.7 gi|336253054|ref|YP_004596161.1| - 0.017 14.6 0.0 0.023 14.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF938) DUF2795 PF11387.3 gi|336253054|ref|YP_004596161.1| - 0.022 14.5 0.1 0.057 13.2 0.1 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2795) DOT1 PF08123.8 gi|336253054|ref|YP_004596161.1| - 0.074 12.3 0.0 0.11 11.7 0.0 1.2 1 0 0 1 1 1 0 Histone methylation protein DOT1 Methyltransf_23 PF13489.1 gi|336253054|ref|YP_004596161.1| - 0.094 12.4 0.0 0.15 11.7 0.0 1.4 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_32 PF13679.1 gi|336253054|ref|YP_004596161.1| - 0.12 12.0 0.0 0.18 11.5 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain PCMT PF01135.14 gi|336253055|ref|YP_004596162.1| - 1.3e-36 126.1 0.0 1.7e-36 125.7 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_18 PF12847.2 gi|336253055|ref|YP_004596162.1| - 2.1e-07 31.5 0.4 6e-07 30.0 0.2 1.9 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|336253055|ref|YP_004596162.1| - 3e-07 29.9 0.0 5.1e-07 29.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|336253055|ref|YP_004596162.1| - 1.2e-06 28.2 0.0 1.6e-06 27.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|336253055|ref|YP_004596162.1| - 0.00023 21.1 2.2 0.00023 21.1 1.6 2.0 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|336253055|ref|YP_004596162.1| - 0.021 15.3 0.0 0.053 14.0 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain PrmA PF06325.8 gi|336253055|ref|YP_004596162.1| - 0.027 13.6 0.0 0.041 13.0 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Met_10 PF02475.11 gi|336253055|ref|YP_004596162.1| - 0.031 13.8 0.0 0.048 13.2 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein CMAS PF02353.15 gi|336253055|ref|YP_004596162.1| - 0.036 13.1 0.0 0.055 12.5 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Fibrillarin PF01269.12 gi|336253055|ref|YP_004596162.1| - 0.055 12.3 0.0 0.074 11.9 0.0 1.2 1 0 0 1 1 1 0 Fibrillarin ACP_syn_III_C PF08541.5 gi|336253055|ref|YP_004596162.1| - 0.069 13.1 0.1 0.15 12.0 0.1 1.5 1 0 0 1 1 1 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal RrnaAD PF00398.15 gi|336253055|ref|YP_004596162.1| - 0.076 12.0 0.0 0.11 11.5 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Eno-Rase_NADH_b PF12242.3 gi|336253055|ref|YP_004596162.1| - 0.1 12.4 0.1 0.19 11.5 0.1 1.4 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase Response_reg PF00072.19 gi|336253056|ref|YP_004596163.1| - 2.5e-22 78.9 0.0 6.4e-22 77.6 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain HTH_10 PF04967.7 gi|336253056|ref|YP_004596163.1| - 9.9e-20 69.8 0.0 2.8e-19 68.4 0.0 1.9 1 0 0 1 1 1 1 HTH DNA binding domain GAF_2 PF13185.1 gi|336253056|ref|YP_004596163.1| - 1.9e-19 70.6 5.8 4.4e-13 49.9 0.4 2.6 2 0 0 2 2 2 2 GAF domain GAF_3 PF13492.1 gi|336253056|ref|YP_004596163.1| - 4.3e-15 55.9 0.3 3.6e-06 27.0 0.0 2.7 2 0 0 2 2 2 2 GAF domain OKR_DC_1_N PF03709.10 gi|336253056|ref|YP_004596163.1| - 2.8e-06 27.3 0.4 2e-05 24.6 0.0 2.6 3 0 0 3 3 3 1 Orn/Lys/Arg decarboxylase, N-terminal domain GAF PF01590.21 gi|336253056|ref|YP_004596163.1| - 8.4e-05 22.7 1.3 0.014 15.5 0.0 2.7 2 0 0 2 2 2 2 GAF domain MCPsignal PF00015.16 gi|336253057|ref|YP_004596164.1| - 2e-47 161.5 36.9 2e-47 161.5 25.6 4.6 3 1 2 5 5 5 4 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.20 gi|336253057|ref|YP_004596164.1| - 6.5e-08 32.6 0.2 6.5e-08 32.6 0.2 5.6 6 1 0 6 6 6 2 HAMP domain ATP-synt_B PF00430.13 gi|336253057|ref|YP_004596164.1| - 0.00097 18.9 26.4 0.00097 18.9 18.3 5.7 4 1 2 6 6 6 1 ATP synthase B/B' CF(0) Laminin_II PF06009.7 gi|336253057|ref|YP_004596164.1| - 0.005 16.5 5.9 0.005 16.5 4.1 6.5 2 1 4 7 7 7 3 Laminin Domain II SnoaL_2 PF12680.2 gi|336253057|ref|YP_004596164.1| - 0.23 11.8 4.7 26 5.3 0.0 4.4 3 1 1 4 4 4 0 SnoaL-like domain DUF948 PF06103.6 gi|336253057|ref|YP_004596164.1| - 3.3 7.6 40.9 0.18 11.6 0.8 6.5 6 1 1 7 7 7 0 Bacterial protein of unknown function (DUF948) NAD_synthase PF02540.12 gi|336253058|ref|YP_004596165.1| - 7.1e-82 273.9 0.0 8.2e-82 273.7 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.11 gi|336253058|ref|YP_004596165.1| - 5.4e-05 21.9 0.0 0.0069 14.9 0.0 2.2 2 0 0 2 2 2 2 tRNA methyl transferase HTH_23 PF13384.1 gi|336253058|ref|YP_004596165.1| - 0.006 16.1 0.1 1 9.0 0.0 3.8 3 1 1 4 4 4 1 Homeodomain-like domain HTH_Tnp_ISL3 PF13542.1 gi|336253058|ref|YP_004596165.1| - 0.027 13.6 0.0 0.18 11.0 0.0 2.4 1 1 1 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 QueC PF06508.8 gi|336253058|ref|YP_004596165.1| - 0.088 12.0 0.0 0.28 10.4 0.0 1.8 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC Acetyltransf_3 PF13302.1 gi|336253059|ref|YP_004596166.1| - 1.1e-26 93.6 0.0 1.3e-26 93.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|336253059|ref|YP_004596166.1| - 4.1e-20 72.2 0.0 4.7e-20 72.0 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|336253059|ref|YP_004596166.1| - 3.1e-14 52.7 0.2 4.8e-14 52.1 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_8 PF13523.1 gi|336253059|ref|YP_004596166.1| - 2.6e-08 33.8 0.1 3.6e-08 33.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|336253059|ref|YP_004596166.1| - 0.0083 16.2 0.0 0.013 15.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|336253059|ref|YP_004596166.1| - 0.011 15.8 0.0 0.016 15.3 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain TetR_N PF00440.18 gi|336253059|ref|YP_004596166.1| - 0.035 13.7 0.1 0.07 12.7 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family Transketolase_C PF02780.15 gi|336253059|ref|YP_004596166.1| - 0.13 12.1 0.0 0.17 11.7 0.0 1.3 1 0 0 1 1 1 0 Transketolase, C-terminal domain Mrr_cat PF04471.7 gi|336253061|ref|YP_004596168.1| - 4.2e-27 94.2 0.3 5.8e-27 93.7 0.2 1.2 1 0 0 1 1 1 1 Restriction endonuclease Mrr_cat_2 PF13156.1 gi|336253061|ref|YP_004596168.1| - 0.0017 18.2 0.2 0.0027 17.6 0.2 1.3 1 0 0 1 1 1 1 Restriction endonuclease GTP-bdg_N PF13167.1 gi|336253061|ref|YP_004596168.1| - 0.0053 16.8 0.1 0.011 15.8 0.1 1.5 1 1 0 1 1 1 1 GTP-binding GTPase N-terminal Claudin_2 PF13903.1 gi|336253061|ref|YP_004596168.1| - 0.02 14.6 0.1 0.044 13.4 0.1 1.7 1 1 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction Epimerase PF01370.16 gi|336253062|ref|YP_004596169.1| - 2.6e-31 108.9 0.1 2e-30 105.9 0.0 1.9 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|336253062|ref|YP_004596169.1| - 2.1e-16 59.6 0.3 3.1e-16 59.1 0.2 1.3 1 1 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.1 gi|336253062|ref|YP_004596169.1| - 9.5e-13 48.5 1.3 1.4e-12 47.9 0.9 1.2 1 0 0 1 1 1 1 NADH(P)-binding NAD_binding_4 PF07993.7 gi|336253062|ref|YP_004596169.1| - 2.5e-12 46.2 0.0 1.2e-09 37.4 0.0 2.2 1 1 0 2 2 2 2 Male sterility protein 3Beta_HSD PF01073.14 gi|336253062|ref|YP_004596169.1| - 3.4e-09 35.8 0.0 4.7e-09 35.3 0.0 1.3 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family adh_short PF00106.20 gi|336253062|ref|YP_004596169.1| - 1e-07 32.0 0.3 2.6e-07 30.7 0.2 1.7 1 0 0 1 1 1 1 short chain dehydrogenase Polysacc_synt_2 PF02719.10 gi|336253062|ref|YP_004596169.1| - 2.4e-06 26.6 0.1 0.0002 20.3 0.1 2.9 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein KR PF08659.5 gi|336253062|ref|YP_004596169.1| - 0.005 16.5 0.5 0.021 14.5 0.3 2.0 1 1 0 1 1 1 1 KR domain NmrA PF05368.8 gi|336253062|ref|YP_004596169.1| - 0.033 13.4 0.2 0.16 11.1 0.0 2.1 3 0 0 3 3 3 0 NmrA-like family DFP PF04127.10 gi|336253062|ref|YP_004596169.1| - 0.078 12.5 0.1 0.33 10.5 0.0 2.0 2 0 0 2 2 2 0 DNA / pantothenate metabolism flavoprotein AAA_33 PF13671.1 gi|336253063|ref|YP_004596170.1| - 2.2e-13 50.3 0.1 3.1e-13 49.8 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|336253063|ref|YP_004596170.1| - 1.4e-09 38.2 0.1 4.7e-08 33.4 0.1 2.3 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|336253063|ref|YP_004596170.1| - 1.3e-08 35.7 0.0 1.8e-08 35.1 0.0 1.4 1 1 0 1 1 1 1 AAA domain KTI12 PF08433.5 gi|336253063|ref|YP_004596170.1| - 2e-08 33.7 0.0 7.7e-07 28.5 0.0 2.0 1 1 0 1 1 1 1 Chromatin associated protein KTI12 AAA_16 PF13191.1 gi|336253063|ref|YP_004596170.1| - 5.9e-08 32.9 0.0 2.3e-07 30.9 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_19 PF13245.1 gi|336253063|ref|YP_004596170.1| - 2.6e-06 27.0 0.3 5.7e-06 25.9 0.2 1.6 1 1 0 1 1 1 1 Part of AAA domain AAA_22 PF13401.1 gi|336253063|ref|YP_004596170.1| - 1.3e-05 25.3 0.0 2.4e-05 24.4 0.0 1.7 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|336253063|ref|YP_004596170.1| - 3.1e-05 23.1 0.1 0.00059 18.9 0.0 2.2 1 1 1 2 2 2 1 Zeta toxin NTPase_1 PF03266.10 gi|336253063|ref|YP_004596170.1| - 0.00011 21.9 0.0 0.00016 21.4 0.0 1.7 1 1 0 1 1 1 1 NTPase AAA_28 PF13521.1 gi|336253063|ref|YP_004596170.1| - 0.00022 21.2 0.2 0.0005 20.0 0.2 2.0 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|336253063|ref|YP_004596170.1| - 0.0003 20.4 0.0 0.00084 18.9 0.0 1.7 1 1 0 1 1 1 1 AAA domain CPT PF07931.7 gi|336253063|ref|YP_004596170.1| - 0.00037 20.1 0.2 0.014 15.0 0.2 2.0 1 1 1 2 2 2 1 Chloramphenicol phosphotransferase-like protein MobB PF03205.9 gi|336253063|ref|YP_004596170.1| - 0.0012 18.5 0.0 0.0021 17.7 0.0 1.5 1 1 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_5 PF07728.9 gi|336253063|ref|YP_004596170.1| - 0.0013 18.4 0.0 0.0034 17.1 0.0 1.7 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) APS_kinase PF01583.15 gi|336253063|ref|YP_004596170.1| - 0.0015 18.1 0.0 0.044 13.4 0.0 2.5 1 1 0 1 1 1 1 Adenylylsulphate kinase cobW PF02492.14 gi|336253063|ref|YP_004596170.1| - 0.0027 17.1 0.0 0.0051 16.2 0.0 1.5 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_14 PF13173.1 gi|336253063|ref|YP_004596170.1| - 0.0028 17.5 0.0 0.0035 17.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain PRK PF00485.13 gi|336253063|ref|YP_004596170.1| - 0.003 17.1 0.0 0.0065 16.0 0.0 1.4 1 1 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family AAA PF00004.24 gi|336253063|ref|YP_004596170.1| - 0.0036 17.4 0.0 0.0071 16.5 0.0 1.5 1 1 1 2 2 2 1 ATPase family associated with various cellular activities (AAA) DUF258 PF03193.11 gi|336253063|ref|YP_004596170.1| - 0.0049 16.0 0.0 0.0063 15.7 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 RNA_helicase PF00910.17 gi|336253063|ref|YP_004596170.1| - 0.013 15.6 0.0 0.019 15.1 0.0 1.3 1 0 0 1 1 1 0 RNA helicase Thymidylate_kin PF02223.12 gi|336253063|ref|YP_004596170.1| - 0.014 14.7 0.0 0.19 11.1 0.0 2.1 2 0 0 2 2 2 0 Thymidylate kinase AAA_10 PF12846.2 gi|336253063|ref|YP_004596170.1| - 0.014 14.8 0.0 0.032 13.6 0.0 1.3 1 1 0 1 1 1 0 AAA-like domain AAA_24 PF13479.1 gi|336253063|ref|YP_004596170.1| - 0.015 14.8 0.1 0.03 13.8 0.1 1.5 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|336253063|ref|YP_004596170.1| - 0.018 15.3 0.0 0.021 15.1 0.0 1.4 1 1 0 1 1 1 0 ABC transporter ArgK PF03308.11 gi|336253063|ref|YP_004596170.1| - 0.018 13.8 0.0 0.025 13.3 0.0 1.2 1 0 0 1 1 1 0 ArgK protein MMR_HSR1 PF01926.18 gi|336253063|ref|YP_004596170.1| - 0.02 14.8 0.0 0.064 13.2 0.0 1.8 1 1 1 2 2 2 0 50S ribosome-binding GTPase Arch_ATPase PF01637.13 gi|336253063|ref|YP_004596170.1| - 0.024 14.3 0.0 0.033 13.8 0.0 1.4 1 1 0 1 1 1 0 Archaeal ATPase ATP_bind_1 PF03029.12 gi|336253063|ref|YP_004596170.1| - 0.025 14.1 0.0 0.043 13.3 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein Mg_chelatase PF01078.16 gi|336253063|ref|YP_004596170.1| - 0.029 13.5 0.0 0.045 12.8 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI RuvB_N PF05496.7 gi|336253063|ref|YP_004596170.1| - 0.032 13.2 0.1 0.073 12.0 0.0 1.6 1 1 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus NACHT PF05729.7 gi|336253063|ref|YP_004596170.1| - 0.052 13.2 0.0 0.069 12.8 0.0 1.3 1 0 0 1 1 1 0 NACHT domain Guanylate_kin PF00625.16 gi|336253063|ref|YP_004596170.1| - 0.078 12.4 0.0 0.15 11.5 0.0 1.5 2 0 0 2 2 2 0 Guanylate kinase UPF0079 PF02367.12 gi|336253063|ref|YP_004596170.1| - 0.081 12.5 0.0 0.12 11.9 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 IstB_IS21 PF01695.12 gi|336253063|ref|YP_004596170.1| - 0.11 11.8 0.0 0.28 10.5 0.0 1.7 2 0 0 2 2 1 0 IstB-like ATP binding protein NB-ARC PF00931.17 gi|336253063|ref|YP_004596170.1| - 0.14 11.0 0.0 0.19 10.5 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_23 PF13476.1 gi|336253063|ref|YP_004596170.1| - 0.17 12.2 0.2 0.32 11.3 0.1 1.4 1 0 0 1 1 1 0 AAA domain CRF-BP PF05428.6 gi|336253063|ref|YP_004596170.1| - 0.17 10.7 0.0 0.17 10.7 0.0 1.2 1 0 0 1 1 1 0 Corticotropin-releasing factor binding protein (CRF-BP) TAT_signal PF10518.4 gi|336253064|ref|YP_004596171.1| - 0.016 15.1 1.6 0.028 14.3 1.1 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence MR_MLE_C PF13378.1 gi|336253065|ref|YP_004596172.1| - 2e-20 72.7 0.0 5.4e-20 71.4 0.1 1.7 2 0 0 2 2 2 1 Enolase C-terminal domain-like MR_MLE PF01188.16 gi|336253065|ref|YP_004596172.1| - 5.5e-16 58.8 1.2 5.5e-16 58.8 0.8 2.1 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MR_MLE_N PF02746.11 gi|336253065|ref|YP_004596172.1| - 1.3e-12 47.7 0.0 2.1e-12 47.0 0.0 1.3 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MAAL_C PF07476.6 gi|336253065|ref|YP_004596172.1| - 0.0011 18.0 0.0 0.0018 17.2 0.0 1.3 1 0 0 1 1 1 1 Methylaspartate ammonia-lyase C-terminus HMGL-like PF00682.14 gi|336253065|ref|YP_004596172.1| - 0.059 13.0 0.1 0.35 10.4 0.0 2.2 3 0 0 3 3 3 0 HMGL-like DUF1611 PF07755.6 gi|336253066|ref|YP_004596173.1| - 2.4e-109 364.6 0.0 2.8e-109 364.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1611) CbiA PF01656.18 gi|336253066|ref|YP_004596173.1| - 0.025 14.0 0.1 0.089 12.1 0.1 1.8 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain MobB PF03205.9 gi|336253066|ref|YP_004596173.1| - 0.11 12.1 0.1 0.26 10.9 0.0 1.7 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B DUF1192 PF06698.6 gi|336253067|ref|YP_004596174.1| - 6e-05 22.7 13.9 0.039 13.7 4.5 3.9 4 0 0 4 4 3 2 Protein of unknown function (DUF1192) Mnd1 PF03962.10 gi|336253067|ref|YP_004596174.1| - 0.001 18.7 4.7 0.001 18.7 3.3 1.5 2 0 0 2 2 1 1 Mnd1 family DUF3450 PF11932.3 gi|336253067|ref|YP_004596174.1| - 0.0015 17.8 2.3 0.0015 17.8 1.6 1.7 2 0 0 2 2 1 1 Protein of unknown function (DUF3450) Tropomyosin PF00261.15 gi|336253067|ref|YP_004596174.1| - 0.0018 17.3 10.3 0.0018 17.3 7.1 1.7 2 1 0 2 2 2 1 Tropomyosin MscS_porin PF12795.2 gi|336253067|ref|YP_004596174.1| - 0.0044 16.3 1.3 0.0044 16.3 0.9 1.5 2 0 0 2 2 1 1 Mechanosensitive ion channel porin domain YlqD PF11068.3 gi|336253067|ref|YP_004596174.1| - 0.0047 16.9 1.0 0.0089 16.0 0.7 1.4 1 0 0 1 1 1 1 YlqD protein eRF1_2 PF03464.10 gi|336253067|ref|YP_004596174.1| - 0.0058 16.9 0.0 0.011 16.0 0.0 1.5 1 0 0 1 1 1 1 eRF1 domain 2 TraF_2 PF13729.1 gi|336253067|ref|YP_004596174.1| - 0.01 14.6 1.8 1 8.0 0.1 2.2 2 0 0 2 2 2 0 F plasmid transfer operon, TraF, protein TMCO5 PF14992.1 gi|336253067|ref|YP_004596174.1| - 0.02 14.0 0.6 0.029 13.4 0.4 1.2 1 0 0 1 1 1 0 TMCO5 family GAS PF13851.1 gi|336253067|ref|YP_004596174.1| - 0.023 13.8 0.5 0.023 13.8 0.4 1.4 2 0 0 2 2 1 0 Growth-arrest specific micro-tubule binding ATG16 PF08614.6 gi|336253067|ref|YP_004596174.1| - 0.025 14.4 6.1 0.049 13.4 4.2 1.4 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) AAA_13 PF13166.1 gi|336253067|ref|YP_004596174.1| - 0.042 12.3 0.1 0.055 11.9 0.1 1.2 1 0 0 1 1 1 0 AAA domain DUF342 PF03961.8 gi|336253067|ref|YP_004596174.1| - 0.042 12.2 0.9 0.076 11.4 0.6 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF342) Fmp27_WPPW PF10359.4 gi|336253067|ref|YP_004596174.1| - 0.054 11.9 3.7 0.088 11.2 2.5 1.2 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain Ax_dynein_light PF10211.4 gi|336253067|ref|YP_004596174.1| - 0.054 13.3 5.3 0.1 12.4 3.7 1.3 1 0 0 1 1 1 0 Axonemal dynein light chain MAD PF05557.8 gi|336253067|ref|YP_004596174.1| - 0.056 11.5 4.6 0.098 10.7 3.2 1.3 1 0 0 1 1 1 0 Mitotic checkpoint protein ADIP PF11559.3 gi|336253067|ref|YP_004596174.1| - 0.067 13.1 4.3 0.13 12.1 3.0 1.4 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding FlxA PF14282.1 gi|336253067|ref|YP_004596174.1| - 0.074 13.0 0.1 0.13 12.2 0.1 1.3 1 0 0 1 1 1 0 FlxA-like protein APG6 PF04111.7 gi|336253067|ref|YP_004596174.1| - 0.084 11.8 3.7 0.15 11.0 2.6 1.4 1 0 0 1 1 1 0 Autophagy protein Apg6 HSP70 PF00012.15 gi|336253067|ref|YP_004596174.1| - 0.14 10.0 1.9 2.4 5.9 0.9 2.0 2 0 0 2 2 2 0 Hsp70 protein Tropomyosin_1 PF12718.2 gi|336253067|ref|YP_004596174.1| - 0.15 11.9 18.0 0.22 11.3 9.6 2.3 2 1 0 2 2 2 0 Tropomyosin like CALCOCO1 PF07888.6 gi|336253067|ref|YP_004596174.1| - 0.16 10.2 5.1 0.25 9.6 3.5 1.3 1 0 0 1 1 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like DUF4407 PF14362.1 gi|336253067|ref|YP_004596174.1| - 0.18 10.7 4.4 0.33 9.8 3.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) OmpH PF03938.9 gi|336253067|ref|YP_004596174.1| - 0.21 11.5 2.4 0.17 11.7 0.6 1.6 2 0 0 2 2 1 0 Outer membrane protein (OmpH-like) DUF1515 PF07439.6 gi|336253067|ref|YP_004596174.1| - 0.21 11.4 3.1 0.52 10.1 2.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1515) HemX PF04375.9 gi|336253067|ref|YP_004596174.1| - 0.22 10.0 2.8 0.37 9.3 1.9 1.3 1 0 0 1 1 1 0 HemX Prefoldin PF02996.12 gi|336253067|ref|YP_004596174.1| - 0.28 10.8 7.1 6.8 6.3 0.6 3.7 3 1 1 4 4 4 0 Prefoldin subunit Myosin_tail_1 PF01576.14 gi|336253067|ref|YP_004596174.1| - 0.3 8.7 14.9 0.033 11.9 6.4 2.0 2 0 0 2 2 2 0 Myosin tail bZIP_2 PF07716.10 gi|336253067|ref|YP_004596174.1| - 0.42 10.4 17.6 0.16 11.7 1.6 2.9 3 0 0 3 3 2 0 Basic region leucine zipper Cep57_MT_bd PF06657.8 gi|336253067|ref|YP_004596174.1| - 0.49 10.3 8.7 7.8 6.5 3.3 2.8 1 1 1 2 2 2 0 Centrosome microtubule-binding domain of Cep57 TMF_DNA_bd PF12329.3 gi|336253067|ref|YP_004596174.1| - 0.5 10.2 8.7 8.2 6.3 6.0 2.4 1 1 0 1 1 1 0 TATA element modulatory factor 1 DNA binding DUF1664 PF07889.7 gi|336253067|ref|YP_004596174.1| - 0.61 9.9 3.6 0.81 9.4 0.8 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) HR1 PF02185.11 gi|336253067|ref|YP_004596174.1| - 0.94 9.2 6.9 1.1 9.0 2.1 2.4 1 1 1 2 2 2 0 Hr1 repeat She9_MDM33 PF05546.6 gi|336253067|ref|YP_004596174.1| - 1.1 8.7 6.2 0.29 10.6 2.1 1.6 2 0 0 2 2 1 0 She9 / Mdm33 family IncA PF04156.9 gi|336253067|ref|YP_004596174.1| - 1.2 8.7 13.9 0.055 13.0 5.5 1.7 2 0 0 2 2 2 0 IncA protein TSC22 PF01166.13 gi|336253067|ref|YP_004596174.1| - 1.2 9.1 5.6 8.4 6.4 0.3 2.5 2 0 0 2 2 2 0 TSC-22/dip/bun family ERM PF00769.14 gi|336253067|ref|YP_004596174.1| - 1.3 8.4 12.9 0.11 11.9 5.8 1.5 2 0 0 2 2 1 0 Ezrin/radixin/moesin family DUF1266 PF06889.6 gi|336253067|ref|YP_004596174.1| - 2.1 8.1 8.1 1.6 8.5 4.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1266) Atg14 PF10186.4 gi|336253067|ref|YP_004596174.1| - 2.7 6.8 6.6 0.47 9.3 1.9 1.7 2 0 0 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 Ead_Ea22 PF13935.1 gi|336253067|ref|YP_004596174.1| - 3.6 7.9 10.2 21 5.4 5.5 2.2 2 0 0 2 2 2 0 Ead/Ea22-like protein FUSC PF04632.7 gi|336253067|ref|YP_004596174.1| - 3.8 5.8 6.8 1.2 7.5 2.5 1.7 2 0 0 2 2 2 0 Fusaric acid resistance protein family PilJ PF13675.1 gi|336253067|ref|YP_004596174.1| - 4 7.7 7.0 12 6.2 3.4 2.6 2 1 0 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term DivIC PF04977.10 gi|336253067|ref|YP_004596174.1| - 5.4 6.5 12.1 13 5.3 2.0 2.7 1 1 1 2 2 2 0 Septum formation initiator Striatin PF08232.7 gi|336253067|ref|YP_004596174.1| - 6.1 7.1 10.9 9.5 6.5 1.2 2.5 1 1 1 2 2 2 0 Striatin family DUF883 PF05957.8 gi|336253067|ref|YP_004596174.1| - 7 7.1 15.7 22 5.5 0.0 3.1 2 1 1 3 3 3 0 Bacterial protein of unknown function (DUF883) Collagen PF01391.13 gi|336253069|ref|YP_004596176.1| - 0.011 15.2 30.1 0.011 15.2 20.9 4.5 2 1 2 4 4 4 0 Collagen triple helix repeat (20 copies) FUSC PF04632.7 gi|336253069|ref|YP_004596176.1| - 0.04 12.3 5.2 0.053 11.9 3.6 1.2 1 0 0 1 1 1 0 Fusaric acid resistance protein family CENP-F_leu_zip PF10473.4 gi|336253069|ref|YP_004596176.1| - 0.09 12.6 2.0 0.13 12.1 1.4 1.2 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 BLOC1_2 PF10046.4 gi|336253069|ref|YP_004596176.1| - 0.16 12.1 0.4 0.24 11.5 0.3 1.2 1 0 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Fmp27_WPPW PF10359.4 gi|336253069|ref|YP_004596176.1| - 0.18 10.1 1.0 0.27 9.6 0.7 1.2 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain Viral_P18 PF04521.8 gi|336253069|ref|YP_004596176.1| - 0.33 10.4 1.1 0.57 9.6 0.4 1.6 2 0 0 2 2 2 0 ssRNA positive strand viral 18kD cysteine rich protein HTH_5 PF01022.15 gi|336253070|ref|YP_004596177.1| - 1.7e-20 72.3 0.2 1.6e-16 59.6 0.1 2.5 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|336253070|ref|YP_004596177.1| - 3.2e-16 58.8 1.0 1.3e-12 47.3 0.2 2.5 2 0 0 2 2 2 2 Helix-turn-helix domain TrmB PF01978.14 gi|336253070|ref|YP_004596177.1| - 1.1e-14 53.8 0.2 4.8e-06 26.1 0.0 2.3 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|336253070|ref|YP_004596177.1| - 2.3e-13 49.3 0.2 5.9e-10 38.3 0.0 2.4 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|336253070|ref|YP_004596177.1| - 5.6e-13 48.3 1.1 1.6e-07 30.8 0.1 2.4 2 0 0 2 2 2 2 MarR family MarR PF01047.17 gi|336253070|ref|YP_004596177.1| - 5.3e-09 35.6 0.1 2.8e-06 26.9 0.0 2.4 2 0 0 2 2 2 1 MarR family HTH_27 PF13463.1 gi|336253070|ref|YP_004596177.1| - 1.1e-08 35.2 0.2 9.6e-06 25.8 0.0 2.5 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.1 gi|336253070|ref|YP_004596177.1| - 4.4e-08 32.7 0.1 0.00018 21.2 0.0 2.8 2 1 0 2 2 2 2 Crp-like helix-turn-helix domain Rrf2 PF02082.15 gi|336253070|ref|YP_004596177.1| - 2.4e-07 30.7 0.0 0.0033 17.4 0.0 2.4 2 0 0 2 2 2 2 Transcriptional regulator HTH_IclR PF09339.5 gi|336253070|ref|YP_004596177.1| - 1.5e-06 27.7 0.1 0.061 12.9 0.1 3.0 2 1 0 2 2 2 2 IclR helix-turn-helix domain Fe_dep_repress PF01325.14 gi|336253070|ref|YP_004596177.1| - 4.8e-06 26.4 0.0 0.00013 21.8 0.0 2.2 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_11 PF08279.7 gi|336253070|ref|YP_004596177.1| - 8.4e-06 25.3 0.0 2.1e-05 24.0 0.0 1.7 1 0 0 1 1 1 1 HTH domain DUF742 PF05331.6 gi|336253070|ref|YP_004596177.1| - 3.8e-05 23.2 0.0 0.096 12.2 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF742) Sulfolobus_pRN PF05584.6 gi|336253070|ref|YP_004596177.1| - 5.3e-05 23.0 0.0 0.42 10.6 0.0 2.5 2 0 0 2 2 2 2 Sulfolobus plasmid regulatory protein PadR PF03551.9 gi|336253070|ref|YP_004596177.1| - 0.00014 21.5 0.4 0.0029 17.3 0.0 3.1 3 1 0 3 3 3 1 Transcriptional regulator PadR-like family GntR PF00392.16 gi|336253070|ref|YP_004596177.1| - 0.00016 21.0 0.2 0.22 11.0 0.0 2.9 2 1 0 2 2 2 1 Bacterial regulatory proteins, gntR family FeoC PF09012.5 gi|336253070|ref|YP_004596177.1| - 0.00029 20.4 0.1 0.43 10.3 0.0 2.9 3 0 0 3 3 3 1 FeoC like transcriptional regulator GPP34 PF05719.6 gi|336253070|ref|YP_004596177.1| - 0.00035 20.7 0.2 0.001 19.2 0.1 1.8 1 1 0 1 1 1 1 Golgi phosphoprotein 3 (GPP34) HxlR PF01638.12 gi|336253070|ref|YP_004596177.1| - 0.00039 19.9 0.0 0.032 13.8 0.0 2.4 2 0 0 2 2 2 1 HxlR-like helix-turn-helix DUF2250 PF10007.4 gi|336253070|ref|YP_004596177.1| - 0.00043 20.1 0.1 0.12 12.3 0.0 2.4 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_45 PF14947.1 gi|336253070|ref|YP_004596177.1| - 0.00062 19.5 0.0 1.1 9.1 0.0 2.4 2 0 0 2 2 2 2 Winged helix-turn-helix HTH_10 PF04967.7 gi|336253070|ref|YP_004596177.1| - 0.0011 18.5 0.0 0.0042 16.6 0.0 2.0 2 0 0 2 2 1 1 HTH DNA binding domain LexA_DNA_bind PF01726.11 gi|336253070|ref|YP_004596177.1| - 0.0013 18.2 0.0 0.0097 15.4 0.0 2.3 2 0 0 2 2 2 1 LexA DNA binding domain HTH_CodY PF08222.6 gi|336253070|ref|YP_004596177.1| - 0.0013 17.9 0.0 0.0031 16.7 0.0 1.6 1 0 0 1 1 1 1 CodY helix-turn-helix domain DUF2513 PF10711.4 gi|336253070|ref|YP_004596177.1| - 0.0015 18.5 0.8 0.0098 15.9 0.0 2.3 3 0 0 3 3 2 1 Hypothetical protein (DUF2513) HTH_23 PF13384.1 gi|336253070|ref|YP_004596177.1| - 0.0015 18.1 0.0 0.0044 16.6 0.0 1.8 1 0 0 1 1 1 1 Homeodomain-like domain IF2_N PF04760.10 gi|336253070|ref|YP_004596177.1| - 0.0037 16.9 0.0 0.41 10.3 0.0 2.5 2 0 0 2 2 2 1 Translation initiation factor IF-2, N-terminal region DDRGK PF09756.4 gi|336253070|ref|YP_004596177.1| - 0.005 16.2 0.0 0.0099 15.3 0.0 1.4 1 0 0 1 1 1 1 DDRGK domain HTH_34 PF13601.1 gi|336253070|ref|YP_004596177.1| - 0.0073 16.3 0.0 0.017 15.1 0.0 1.6 2 0 0 2 2 1 1 Winged helix DNA-binding domain HTH_1 PF00126.22 gi|336253070|ref|YP_004596177.1| - 0.0088 15.7 0.3 3.2 7.5 0.0 2.6 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_AsnC-type PF13404.1 gi|336253070|ref|YP_004596177.1| - 0.011 15.2 0.2 0.099 12.1 0.1 2.6 1 1 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_36 PF13730.1 gi|336253070|ref|YP_004596177.1| - 0.019 15.0 0.0 0.039 14.0 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain ArsR PF09824.4 gi|336253070|ref|YP_004596177.1| - 0.023 14.0 0.0 0.072 12.4 0.0 1.8 2 1 1 3 3 3 0 ArsR transcriptional regulator HemN_C PF06969.11 gi|336253070|ref|YP_004596177.1| - 0.027 14.5 0.8 4.3 7.4 0.0 2.9 3 0 0 3 3 3 0 HemN C-terminal domain DUF4423 PF14394.1 gi|336253070|ref|YP_004596177.1| - 0.047 13.2 0.0 4.4 6.8 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4423) RPA_C PF08784.6 gi|336253070|ref|YP_004596177.1| - 0.054 13.9 0.0 2.6 8.5 0.0 2.3 2 0 0 2 2 2 0 Replication protein A C terminal HTH_DeoR PF08220.7 gi|336253070|ref|YP_004596177.1| - 0.055 13.0 0.0 0.17 11.4 0.0 1.9 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain B-block_TFIIIC PF04182.7 gi|336253070|ref|YP_004596177.1| - 0.076 12.8 0.0 0.15 11.9 0.0 1.4 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC TFIIE_alpha PF02002.12 gi|336253070|ref|YP_004596177.1| - 0.079 12.4 0.1 0.44 10.0 0.1 2.1 2 0 0 2 2 2 0 TFIIE alpha subunit EAP30 PF04157.11 gi|336253070|ref|YP_004596177.1| - 0.08 12.0 0.3 10 5.2 0.0 2.6 2 1 0 2 2 2 0 EAP30/Vps36 family FaeA PF04703.7 gi|336253070|ref|YP_004596177.1| - 0.13 12.4 0.1 0.34 11.1 0.0 1.7 2 0 0 2 2 1 0 FaeA-like protein DUF456 PF04306.8 gi|336253071|ref|YP_004596178.1| - 0.18 11.8 15.0 0.49 10.4 10.0 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF456) TctB PF07331.6 gi|336253071|ref|YP_004596178.1| - 1.5 8.4 13.2 0.12 11.9 5.2 1.8 1 1 1 2 2 2 0 Tripartite tricarboxylate transporter TctB family DUF998 PF06197.8 gi|336253072|ref|YP_004596179.1| - 0.055 12.7 5.4 0.97 8.7 0.3 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF998) TctB PF07331.6 gi|336253072|ref|YP_004596179.1| - 0.072 12.7 6.0 0.096 12.3 4.2 1.2 1 0 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family DUF3098 PF11297.3 gi|336253072|ref|YP_004596179.1| - 0.32 10.7 2.3 0.52 10.0 1.6 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3098) DUF2254 PF10011.4 gi|336253072|ref|YP_004596179.1| - 0.36 9.2 1.8 0.42 9.0 1.2 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2254) DUF202 PF02656.10 gi|336253072|ref|YP_004596179.1| - 1 9.6 4.9 2.3 8.5 3.4 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF202) DUF2905 PF11146.3 gi|336253072|ref|YP_004596179.1| - 1.4 8.9 6.2 11 6.1 1.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2905) DUF1206 PF06724.6 gi|336253072|ref|YP_004596179.1| - 8.4 6.2 10.9 94 2.8 7.6 2.1 1 1 0 1 1 1 0 Domain of Unknown Function (DUF1206) DUF2970 PF11174.3 gi|336253072|ref|YP_004596179.1| - 9.2 5.9 8.0 8.4 6.0 0.3 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2970) Asparaginase PF00710.15 gi|336253073|ref|YP_004596180.1| - 1.4e-87 293.5 0.0 1.7e-87 293.2 0.0 1.1 1 0 0 1 1 1 1 Asparaginase Acetyltransf_1 PF00583.19 gi|336253074|ref|YP_004596181.1| - 2.7e-10 40.1 2.0 2.7e-10 40.1 0.3 1.9 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|336253074|ref|YP_004596181.1| - 2.9e-08 33.8 2.7 0.00028 20.9 0.1 2.5 2 1 0 2 2 2 2 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|336253074|ref|YP_004596181.1| - 0.00031 20.6 0.8 0.0039 17.0 0.2 2.6 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|336253074|ref|YP_004596181.1| - 0.00087 19.1 0.1 0.0021 17.8 0.0 1.7 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_3 PF13302.1 gi|336253074|ref|YP_004596181.1| - 0.002 18.2 1.1 0.0099 16.0 0.2 2.3 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain PknH_C PF14032.1 gi|336253074|ref|YP_004596181.1| - 0.0054 16.3 1.5 0.013 15.1 1.0 1.6 1 0 0 1 1 1 1 PknH-like extracellular domain FoP_duplication PF13865.1 gi|336253074|ref|YP_004596181.1| - 0.0059 17.0 0.0 0.015 15.6 0.0 1.8 1 0 0 1 1 1 1 C-terminal duplication domain of Friend of PRMT1 Acetyltransf_7 PF13508.1 gi|336253074|ref|YP_004596181.1| - 0.011 15.8 0.0 0.026 14.6 0.0 1.6 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|336253074|ref|YP_004596181.1| - 0.024 14.5 0.0 0.065 13.1 0.0 1.7 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|336253074|ref|YP_004596181.1| - 0.042 13.8 0.5 0.042 13.8 0.3 2.8 3 0 0 3 3 3 0 Acetyltransferase (GNAT) domain DUF3749 PF12568.3 gi|336253074|ref|YP_004596181.1| - 0.065 12.8 0.1 0.12 12.0 0.0 1.5 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain DUF883 PF05957.8 gi|336253074|ref|YP_004596181.1| - 0.08 13.3 0.0 0.25 11.7 0.0 1.8 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF883) ThiS PF02597.15 gi|336253075|ref|YP_004596182.1| - 2.7e-19 69.3 0.5 3e-19 69.2 0.4 1.0 1 0 0 1 1 1 1 ThiS family Flagellin_IN PF07196.8 gi|336253075|ref|YP_004596182.1| - 0.02 14.8 1.3 0.4 10.6 0.2 2.1 2 0 0 2 2 2 0 Flagellin hook IN motif TrkA_C PF02080.16 gi|336253076|ref|YP_004596183.1| - 4.4e-07 29.3 1.1 3.3e-06 26.6 0.2 2.4 2 0 0 2 2 2 1 TrkA-C domain TrkA_C PF02080.16 gi|336253077|ref|YP_004596184.1| - 0.0027 17.2 0.4 0.016 14.7 0.1 2.4 2 0 0 2 2 2 1 TrkA-C domain 5TM-5TMR_LYT PF07694.7 gi|336253077|ref|YP_004596184.1| - 0.084 12.1 6.5 0.13 11.5 4.5 1.2 1 0 0 1 1 1 0 5TMR of 5TMR-LYT TrkA_N PF02254.13 gi|336253078|ref|YP_004596185.1| - 4.9e-27 94.2 0.8 7.7e-27 93.6 0.5 1.3 1 0 0 1 1 1 1 TrkA-N domain Ion_trans_2 PF07885.11 gi|336253078|ref|YP_004596185.1| - 1.2e-12 47.3 4.2 1.2e-12 47.3 2.9 2.1 2 0 0 2 2 2 1 Ion channel Ion_trans PF00520.26 gi|336253078|ref|YP_004596185.1| - 2.9e-05 23.4 0.7 5.5e-05 22.5 0.5 1.4 1 0 0 1 1 1 1 Ion transport protein Pam17 PF08566.5 gi|336253078|ref|YP_004596185.1| - 0.49 10.0 2.7 0.46 10.1 0.1 2.0 2 0 0 2 2 2 0 Mitochondrial import protein Pam17 DUF983 PF06170.7 gi|336253078|ref|YP_004596185.1| - 6.5 6.9 6.1 3.1 7.9 0.1 3.0 2 1 1 3 3 3 0 Protein of unknown function (DUF983) HPP PF04982.8 gi|336253079|ref|YP_004596186.1| - 1.9e-07 30.9 1.5 3.9e-07 29.9 1.0 1.5 1 0 0 1 1 1 1 HPP family Usp PF00582.21 gi|336253079|ref|YP_004596186.1| - 5.8e-06 26.5 0.6 0.0025 18.0 0.1 2.8 2 1 0 2 2 2 2 Universal stress protein family DUF1614 PF07758.6 gi|336253079|ref|YP_004596186.1| - 2.4 7.8 7.8 0.068 12.8 0.9 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1614) TrmB PF01978.14 gi|336253081|ref|YP_004596188.1| - 4.3e-20 71.1 0.2 2.1e-19 69.0 0.0 2.3 3 0 0 3 3 3 1 Sugar-specific transcriptional regulator TrmB Regulator_TrmB PF11495.3 gi|336253081|ref|YP_004596188.1| - 0.0002 20.4 0.1 0.00026 20.0 0.1 1.2 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB HTH_20 PF12840.2 gi|336253081|ref|YP_004596188.1| - 0.0016 18.1 0.5 0.012 15.3 0.1 2.6 3 1 0 3 3 3 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|336253081|ref|YP_004596188.1| - 0.0064 16.1 0.2 0.095 12.3 0.0 2.6 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.5 gi|336253081|ref|YP_004596188.1| - 0.012 15.2 0.1 0.037 13.6 0.0 1.9 1 0 0 1 1 1 0 IclR helix-turn-helix domain E2F_TDP PF02319.15 gi|336253081|ref|YP_004596188.1| - 0.021 14.4 0.0 0.05 13.1 0.0 1.7 1 1 0 1 1 1 0 E2F/DP family winged-helix DNA-binding domain DUF2250 PF10007.4 gi|336253081|ref|YP_004596188.1| - 0.045 13.6 0.0 0.084 12.7 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) PadR PF03551.9 gi|336253081|ref|YP_004596188.1| - 0.094 12.4 0.0 0.36 10.6 0.0 2.0 2 0 0 2 2 2 0 Transcriptional regulator PadR-like family HTH_20 PF12840.2 gi|336253082|ref|YP_004596189.1| - 0.0055 16.4 0.2 0.043 13.6 0.1 2.2 1 1 0 1 1 1 1 Helix-turn-helix domain DeoC PF01791.4 gi|336253083|ref|YP_004596190.1| - 1.8e-37 128.9 1.3 2e-37 128.7 0.9 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase CRA_rpt PF07046.6 gi|336253083|ref|YP_004596190.1| - 0.022 14.7 2.3 0.048 13.6 1.6 1.5 1 0 0 1 1 1 0 Cytoplasmic repetitive antigen (CRA) like repeat IF-2B PF01008.12 gi|336253084|ref|YP_004596191.1| - 2.7e-75 252.9 0.1 3.2e-75 252.7 0.1 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family DUF2849 PF11011.3 gi|336253084|ref|YP_004596191.1| - 0.023 14.9 8.6 1.8 8.8 2.4 3.4 3 1 0 3 3 3 0 Protein of unknown function (DUF2849) PRP4 PF08799.6 gi|336253084|ref|YP_004596191.1| - 0.1 11.8 1.6 0.7 9.2 0.0 2.9 3 0 0 3 3 3 0 pre-mRNA processing factor 4 (PRP4) like DUF63 PF01889.12 gi|336253085|ref|YP_004596192.1| - 4.1e-17 63.1 8.4 5.1e-17 62.8 5.8 1.1 1 0 0 1 1 1 1 Membrane protein of unknown function DUF63 Phage_Coat_Gp8 PF05371.7 gi|336253085|ref|YP_004596192.1| - 0.18 11.4 0.2 0.18 11.4 0.2 2.9 3 0 0 3 3 3 0 Phage major coat protein, Gp8 DUF4173 PF13777.1 gi|336253085|ref|YP_004596192.1| - 0.67 9.2 10.1 5.2 6.3 0.1 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4173) PfkB PF00294.19 gi|336253086|ref|YP_004596193.1| - 5.7e-51 173.4 5.4 6.8e-51 173.1 3.7 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase PNP_UDP_1 PF01048.15 gi|336253088|ref|YP_004596195.1| - 2.9e-48 163.8 2.6 3.5e-48 163.5 1.8 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily Fzo_mitofusin PF04799.8 gi|336253089|ref|YP_004596196.1| - 0.033 13.5 1.5 0.031 13.6 1.1 1.1 1 0 0 1 1 1 0 fzo-like conserved region DUF2530 PF10745.4 gi|336253089|ref|YP_004596196.1| - 0.039 13.9 2.5 0.047 13.6 1.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2530) DUF2244 PF10003.4 gi|336253089|ref|YP_004596196.1| - 0.058 12.7 0.9 0.065 12.5 0.6 1.2 1 0 0 1 1 1 0 Integral membrane protein (DUF2244) DZR PF12773.2 gi|336253091|ref|YP_004596198.1| - 0.099 12.4 6.3 4.1 7.3 0.9 2.8 2 1 0 2 2 2 0 Double zinc ribbon zf-C3HC4_3 PF13920.1 gi|336253091|ref|YP_004596198.1| - 0.47 10.1 5.8 1.2 8.8 0.5 2.8 3 0 0 3 3 3 0 Zinc finger, C3HC4 type (RING finger) DUF1508 PF07411.7 gi|336253092|ref|YP_004596199.1| - 7.6e-16 57.2 0.0 1.2e-15 56.6 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1508) Herpes_capsid PF06112.6 gi|336253092|ref|YP_004596199.1| - 9.7 6.2 7.3 17 5.4 5.1 1.4 1 0 0 1 1 1 0 Gammaherpesvirus capsid protein DUF547 PF04784.9 gi|336253093|ref|YP_004596200.1| - 4.1e-19 68.5 0.0 6.5e-19 67.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF547 UPF0118 PF01594.11 gi|336253094|ref|YP_004596201.1| - 3.2e-49 167.6 28.7 3.8e-49 167.4 19.9 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF20 SUR7 PF06687.7 gi|336253094|ref|YP_004596201.1| - 0.031 13.8 10.5 1.1 8.8 0.1 2.4 2 0 0 2 2 2 0 SUR7/PalI family UPF0233 PF06781.7 gi|336253094|ref|YP_004596201.1| - 0.093 12.3 3.5 0.22 11.1 0.0 3.0 3 0 0 3 3 3 0 Uncharacterised protein family (UPF0233) DUF4350 PF14258.1 gi|336253095|ref|YP_004596202.1| - 0.0011 19.1 2.6 0.0061 16.7 0.1 2.6 2 1 0 2 2 2 1 Domain of unknown function (DUF4350) ABC_transp_aux PF09822.4 gi|336253095|ref|YP_004596202.1| - 0.0046 16.4 0.0 0.0062 16.0 0.0 1.3 1 0 0 1 1 1 1 ABC-type uncharacterized transport system Peptidase_S49 PF01343.13 gi|336253096|ref|YP_004596203.1| - 1.9e-18 66.7 3.5 1.6e-16 60.4 2.4 2.3 1 1 0 1 1 1 1 Peptidase family S49 CLP_protease PF00574.18 gi|336253096|ref|YP_004596203.1| - 4.4e-07 29.7 0.6 3.9e-05 23.3 0.4 2.4 1 1 0 1 1 1 1 Clp protease OKR_DC_1_N PF03709.10 gi|336253096|ref|YP_004596203.1| - 0.1 12.6 0.0 0.22 11.5 0.0 1.5 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain Radical_SAM PF04055.16 gi|336253097|ref|YP_004596204.1| - 1.1e-16 61.4 0.5 2.6e-16 60.2 0.1 1.9 2 0 0 2 2 2 1 Radical SAM superfamily MCPsignal PF00015.16 gi|336253098|ref|YP_004596205.1| - 8.6e-49 165.9 61.6 2.4e-47 161.2 22.5 4.9 3 2 2 5 5 5 3 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.20 gi|336253098|ref|YP_004596205.1| - 1.2e-07 31.8 1.0 1.2e-07 31.8 0.7 6.9 5 2 1 6 6 4 2 HAMP domain Laminin_II PF06009.7 gi|336253098|ref|YP_004596205.1| - 9e-06 25.4 30.0 0.0029 17.3 1.8 5.3 3 2 3 6 6 6 3 Laminin Domain II DUF948 PF06103.6 gi|336253098|ref|YP_004596205.1| - 1.9e-05 24.4 21.9 0.016 15.0 0.2 5.7 4 1 1 5 5 5 2 Bacterial protein of unknown function (DUF948) AAA_13 PF13166.1 gi|336253098|ref|YP_004596205.1| - 0.00011 20.8 24.5 0.012 14.0 5.2 2.2 1 1 1 2 2 2 2 AAA domain V_ATPase_I PF01496.14 gi|336253098|ref|YP_004596205.1| - 0.00069 17.6 13.4 0.00069 17.6 9.3 1.7 2 0 0 2 2 2 1 V-type ATPase 116kDa subunit family CENP-F_leu_zip PF10473.4 gi|336253098|ref|YP_004596205.1| - 0.002 17.9 4.9 0.002 17.9 3.4 4.4 2 2 2 4 4 4 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Rootletin PF15035.1 gi|336253098|ref|YP_004596205.1| - 0.0039 17.1 5.6 0.0039 17.1 3.9 3.3 2 1 1 3 3 3 1 Ciliary rootlet component, centrosome cohesion NPV_P10 PF05531.7 gi|336253098|ref|YP_004596205.1| - 0.008 16.4 24.8 0.034 14.3 1.5 5.9 3 2 1 4 4 4 1 Nucleopolyhedrovirus P10 protein DUF4200 PF13863.1 gi|336253098|ref|YP_004596205.1| - 0.01 15.8 25.8 0.024 14.5 2.9 3.7 3 0 0 3 3 3 0 Domain of unknown function (DUF4200) RPW8 PF05659.6 gi|336253098|ref|YP_004596205.1| - 0.016 14.7 8.9 0.31 10.5 0.0 4.6 2 2 3 5 5 5 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 DUF972 PF06156.8 gi|336253098|ref|YP_004596205.1| - 0.028 14.7 23.2 0.38 11.1 0.6 5.5 2 2 2 5 5 5 0 Protein of unknown function (DUF972) GAS PF13851.1 gi|336253098|ref|YP_004596205.1| - 0.092 11.9 16.5 4.4 6.4 0.8 4.5 2 1 1 4 4 4 0 Growth-arrest specific micro-tubule binding Atg14 PF10186.4 gi|336253098|ref|YP_004596205.1| - 0.15 11.0 12.4 4.1 6.2 0.0 4.0 3 1 1 4 4 4 0 UV radiation resistance protein and autophagy-related subunit 14 Laminin_I PF06008.9 gi|336253098|ref|YP_004596205.1| - 0.16 11.2 35.3 0.33 10.2 0.1 4.6 1 1 3 4 4 4 0 Laminin Domain I Sec5 PF15469.1 gi|336253098|ref|YP_004596205.1| - 0.46 10.1 5.8 0.12 12.0 0.3 2.5 1 1 1 3 3 3 0 Exocyst complex component Sec5 BLOC1_2 PF10046.4 gi|336253098|ref|YP_004596205.1| - 0.83 9.8 29.8 0.082 13.0 2.0 6.2 3 2 3 7 7 7 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Spc7 PF08317.6 gi|336253098|ref|YP_004596205.1| - 0.9 8.1 26.0 0.5 8.9 2.7 3.5 2 2 1 3 3 3 0 Spc7 kinetochore protein Fib_alpha PF08702.5 gi|336253098|ref|YP_004596205.1| - 1.1 9.4 12.7 6.6 6.8 1.2 4.4 2 2 2 4 4 4 0 Fibrinogen alpha/beta chain family Spectrin PF00435.16 gi|336253098|ref|YP_004596205.1| - 1.1 9.5 23.7 0.4 10.9 0.8 5.9 3 2 3 6 6 6 0 Spectrin repeat DUF3407 PF11887.3 gi|336253098|ref|YP_004596205.1| - 2.3 7.4 17.3 1.9 7.7 1.7 3.3 2 2 1 3 3 3 0 Protein of unknown function (DUF3407) Dor1 PF04124.7 gi|336253098|ref|YP_004596205.1| - 2.6 6.4 14.8 3.1 6.1 1.0 3.7 2 1 1 3 3 3 0 Dor1-like family DUF812 PF05667.6 gi|336253098|ref|YP_004596205.1| - 5.3 5.4 33.9 0.1 11.1 10.4 2.7 1 1 1 2 2 2 0 Protein of unknown function (DUF812) Reo_sigmaC PF04582.7 gi|336253098|ref|YP_004596205.1| - 6 5.9 25.0 6.6 5.8 0.3 3.9 1 1 1 3 3 3 0 Reovirus sigma C capsid protein Seryl_tRNA_N PF02403.17 gi|336253098|ref|YP_004596205.1| - 6.7 6.7 30.4 2.6 8.0 0.9 5.5 3 2 3 6 6 6 0 Seryl-tRNA synthetase N-terminal domain DUF310 PF03750.8 gi|336253098|ref|YP_004596205.1| - 9.4 6.4 9.1 8.3 6.6 0.5 4.1 3 2 1 4 4 4 0 Protein of unknown function (DUF310) SAICAR_synt PF01259.13 gi|336253099|ref|YP_004596206.1| - 4.4e-17 62.0 0.0 9.7e-17 60.8 0.0 1.5 1 1 0 1 1 1 1 SAICAR synthetase DUF4110 PF13422.1 gi|336253099|ref|YP_004596206.1| - 0.043 13.6 0.0 0.094 12.5 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4110) SPW PF03779.9 gi|336253100|ref|YP_004596207.1| - 0.00046 19.5 6.1 0.00046 19.5 4.3 3.0 3 1 0 3 3 3 2 SPW repeat Fumarate_red_C PF02300.12 gi|336253100|ref|YP_004596207.1| - 0.27 11.1 1.8 10 6.0 0.1 2.6 2 1 0 2 2 2 0 Fumarate reductase subunit C Claudin_2 PF13903.1 gi|336253100|ref|YP_004596207.1| - 0.99 9.0 14.3 0.012 15.3 1.1 2.5 1 1 1 2 2 2 0 PMP-22/EMP/MP20/Claudin tight junction UPF0197 PF05251.7 gi|336253100|ref|YP_004596207.1| - 3.2 8.1 10.9 12 6.3 0.7 3.2 3 0 0 3 3 3 0 Uncharacterised protein family (UPF0197) DUF2267 PF10025.4 gi|336253101|ref|YP_004596208.1| - 6.5e-28 97.3 1.1 7.3e-28 97.1 0.7 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2267) zf-RING_2 PF13639.1 gi|336253102|ref|YP_004596209.1| - 0.002 17.9 0.4 0.0027 17.5 0.3 1.2 1 0 0 1 1 1 1 Ring finger domain DUF2116 PF09889.4 gi|336253102|ref|YP_004596209.1| - 0.018 14.8 0.7 1.3 8.8 0.1 2.1 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) Prok-RING_1 PF14446.1 gi|336253102|ref|YP_004596209.1| - 0.036 13.7 2.3 0.051 13.3 1.6 1.3 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 YHS PF04945.8 gi|336253102|ref|YP_004596209.1| - 0.057 13.2 1.0 0.56 10.1 0.2 2.2 2 0 0 2 2 2 0 YHS domain DUF372 PF04036.7 gi|336253102|ref|YP_004596209.1| - 0.089 12.2 0.9 0.85 9.1 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF372) Zn-ribbon_8 PF09723.5 gi|336253102|ref|YP_004596209.1| - 0.09 12.7 4.4 1.5 8.8 0.3 2.1 2 0 0 2 2 2 0 Zinc ribbon domain zf-FCS PF06467.9 gi|336253102|ref|YP_004596209.1| - 0.11 12.1 0.4 0.15 11.7 0.3 1.4 1 1 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif GFA PF04828.9 gi|336253102|ref|YP_004596209.1| - 0.12 12.2 1.0 0.71 9.8 0.2 1.9 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme DUF3330 PF11809.3 gi|336253102|ref|YP_004596209.1| - 0.2 11.5 1.9 0.28 11.0 1.3 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF3330) Formyl_trans_N PF00551.14 gi|336253104|ref|YP_004596211.1| - 1.2e-43 148.8 0.0 4.1e-43 147.0 0.0 1.7 2 0 0 2 2 2 1 Formyl transferase ACT_6 PF13740.1 gi|336253104|ref|YP_004596211.1| - 3.4e-09 36.2 0.1 6.9e-09 35.3 0.1 1.5 1 0 0 1 1 1 1 ACT domain ACT PF01842.20 gi|336253104|ref|YP_004596211.1| - 8.5e-06 25.1 1.6 1.6e-05 24.2 0.1 2.3 3 0 0 3 3 3 1 ACT domain ACT_4 PF13291.1 gi|336253104|ref|YP_004596211.1| - 0.00011 22.4 0.1 0.00031 21.0 0.1 1.7 1 0 0 1 1 1 1 ACT domain Glyco_transf_28 PF03033.15 gi|336253104|ref|YP_004596211.1| - 0.11 12.2 0.0 0.32 10.7 0.0 1.8 2 1 0 2 2 2 0 Glycosyltransferase family 28 N-terminal domain SHOCT PF09851.4 gi|336253106|ref|YP_004596213.1| - 1.6e-08 33.6 0.9 3.2e-08 32.7 0.6 1.5 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.6 gi|336253106|ref|YP_004596213.1| - 7e-06 25.7 2.6 1.5e-05 24.6 1.8 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1707) SelB-wing_2 PF09106.6 gi|336253106|ref|YP_004596213.1| - 0.059 13.2 0.4 0.46 10.4 0.1 2.2 2 0 0 2 2 2 0 Elongation factor SelB, winged helix PurS PF02700.9 gi|336253107|ref|YP_004596214.1| - 1.8e-26 91.9 0.0 1.9e-26 91.7 0.0 1.0 1 0 0 1 1 1 1 Phosphoribosylformylglycinamidine (FGAM) synthase AP_endonuc_2 PF01261.19 gi|336253107|ref|YP_004596214.1| - 0.045 13.0 0.3 0.053 12.8 0.2 1.1 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel DUF2184 PF09950.4 gi|336253107|ref|YP_004596214.1| - 0.14 11.1 0.1 0.16 11.0 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2184) GATase_5 PF13507.1 gi|336253108|ref|YP_004596215.1| - 8.2e-43 146.1 0.0 1e-42 145.8 0.0 1.1 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.23 gi|336253108|ref|YP_004596215.1| - 4.4e-08 32.8 0.0 5.3e-08 32.5 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.9 gi|336253108|ref|YP_004596215.1| - 6.6e-05 22.5 0.0 0.00016 21.2 0.0 1.9 2 1 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain DUF4066 PF13278.1 gi|336253108|ref|YP_004596215.1| - 0.0017 17.6 0.0 0.0024 17.1 0.0 1.2 1 0 0 1 1 1 1 Putative amidotransferase DJ-1_PfpI PF01965.19 gi|336253108|ref|YP_004596215.1| - 0.0059 16.0 0.0 0.0088 15.5 0.0 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family Peptidase_C26 PF07722.8 gi|336253108|ref|YP_004596215.1| - 0.085 12.2 0.0 0.12 11.7 0.0 1.3 1 0 0 1 1 1 0 Peptidase C26 PAS_9 PF13426.1 gi|336253109|ref|YP_004596216.1| - 4e-26 91.3 0.1 1.8e-14 53.9 0.0 2.7 2 0 0 2 2 2 2 PAS domain PAS PF00989.19 gi|336253109|ref|YP_004596216.1| - 2.9e-21 75.3 0.1 9.3e-14 51.1 0.0 2.7 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.1 gi|336253109|ref|YP_004596216.1| - 1.1e-16 60.0 0.0 1.7e-07 30.8 0.0 2.9 2 0 0 2 2 2 2 PAS domain GAF_2 PF13185.1 gi|336253109|ref|YP_004596216.1| - 1.1e-14 55.2 9.3 4.4e-11 43.4 0.5 2.9 2 0 0 2 2 2 2 GAF domain GAF_3 PF13492.1 gi|336253109|ref|YP_004596216.1| - 1.4e-14 54.2 3.1 5.4e-10 39.4 0.2 3.1 3 0 0 3 3 3 2 GAF domain HATPase_c PF02518.21 gi|336253109|ref|YP_004596216.1| - 4.6e-14 52.0 0.0 9.2e-14 51.1 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|336253109|ref|YP_004596216.1| - 1.2e-13 51.0 8.4 2.9e-08 33.7 0.3 4.6 4 1 0 4 4 4 2 PAS fold GAF PF01590.21 gi|336253109|ref|YP_004596216.1| - 6.7e-12 45.7 4.9 7.2e-10 39.2 0.2 3.5 3 0 0 3 3 3 2 GAF domain PAS_3 PF08447.6 gi|336253109|ref|YP_004596216.1| - 1.1e-09 38.2 0.0 1.3e-06 28.4 0.0 2.6 2 0 0 2 2 2 2 PAS fold PAS_7 PF12860.2 gi|336253109|ref|YP_004596216.1| - 0.00013 21.9 3.3 0.016 15.2 0.1 4.3 5 0 0 5 5 4 1 PAS fold Response_reg PF00072.19 gi|336253109|ref|YP_004596216.1| - 0.00045 20.2 0.0 0.0019 18.1 0.0 2.1 1 0 0 1 1 1 1 Response regulator receiver domain HisKA PF00512.20 gi|336253109|ref|YP_004596216.1| - 0.0027 17.6 0.9 0.0027 17.6 0.6 2.8 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain MEKHLA PF08670.6 gi|336253109|ref|YP_004596216.1| - 0.035 13.6 0.0 0.13 11.7 0.0 1.9 2 0 0 2 2 2 0 MEKHLA domain Radical_SAM PF04055.16 gi|336253110|ref|YP_004596217.1| - 0.00087 19.4 0.1 0.0015 18.7 0.1 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Rubredoxin PF00301.15 gi|336253111|ref|YP_004596218.1| - 0.00029 20.6 1.4 0.00038 20.2 0.5 1.6 2 0 0 2 2 1 1 Rubredoxin Zn-ribbon_8 PF09723.5 gi|336253111|ref|YP_004596218.1| - 0.00032 20.6 0.3 0.48 10.4 0.1 2.2 2 0 0 2 2 2 2 Zinc ribbon domain RNA_POL_M_15KD PF02150.11 gi|336253111|ref|YP_004596218.1| - 0.0042 16.7 0.8 0.17 11.5 0.1 2.2 2 0 0 2 2 2 1 RNA polymerases M/15 Kd subunit TF_Zn_Ribbon PF08271.7 gi|336253111|ref|YP_004596218.1| - 0.0047 16.2 0.9 1.9 7.8 0.1 2.1 2 0 0 2 2 2 2 TFIIB zinc-binding Nudix_N_2 PF14803.1 gi|336253111|ref|YP_004596218.1| - 0.0051 16.4 2.3 0.085 12.5 0.2 2.2 2 0 0 2 2 2 1 Nudix N-terminal Elf1 PF05129.8 gi|336253111|ref|YP_004596218.1| - 0.014 15.0 0.9 1.7 8.3 0.0 2.1 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like zf-ribbon_3 PF13248.1 gi|336253111|ref|YP_004596218.1| - 0.019 14.1 2.8 0.82 8.9 0.3 2.2 1 1 1 2 2 2 0 zinc-ribbon domain RecR PF02132.10 gi|336253111|ref|YP_004596218.1| - 0.027 13.8 0.8 2.1 7.8 0.1 2.2 2 0 0 2 2 2 0 RecR protein zinc_ribbon_2 PF13240.1 gi|336253111|ref|YP_004596218.1| - 0.029 13.8 1.2 6.2 6.4 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|336253111|ref|YP_004596218.1| - 0.041 13.6 1.7 1 9.2 1.2 2.1 1 1 0 1 1 1 0 Double zinc ribbon Zn_Tnp_IS1595 PF12760.2 gi|336253111|ref|YP_004596218.1| - 0.046 13.5 4.3 0.35 10.7 0.2 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Ribosomal_L44 PF00935.14 gi|336253111|ref|YP_004596218.1| - 0.048 13.6 0.7 2 8.4 0.5 2.2 1 1 0 1 1 1 0 Ribosomal protein L44 zf-Mss51 PF13824.1 gi|336253111|ref|YP_004596218.1| - 0.066 13.0 0.2 3.6 7.5 0.0 2.3 2 0 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 HypA PF01155.14 gi|336253111|ref|YP_004596218.1| - 0.069 12.8 0.2 0.098 12.3 0.1 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family A2L_zn_ribbon PF08792.5 gi|336253111|ref|YP_004596218.1| - 0.092 12.2 3.4 2.5 7.6 0.1 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain OrfB_Zn_ribbon PF07282.6 gi|336253111|ref|YP_004596218.1| - 0.14 11.8 1.7 0.42 10.3 1.2 1.8 1 1 0 1 1 1 0 Putative transposase DNA-binding domain DUF2296 PF10058.4 gi|336253111|ref|YP_004596218.1| - 0.15 11.8 0.6 2.5 7.8 0.1 2.1 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) ADK_lid PF05191.9 gi|336253111|ref|YP_004596218.1| - 0.15 11.7 1.7 0.6 9.8 0.2 2.2 2 0 0 2 2 2 0 Adenylate kinase, active site lid Lar_restr_allev PF14354.1 gi|336253111|ref|YP_004596218.1| - 0.15 12.3 1.0 0.72 10.2 0.7 1.9 1 1 0 1 1 1 0 Restriction alleviation protein Lar GATA PF00320.22 gi|336253111|ref|YP_004596218.1| - 0.18 11.1 1.7 0.78 9.1 0.1 2.2 2 0 0 2 2 2 0 GATA zinc finger DUF1610 PF07754.6 gi|336253111|ref|YP_004596218.1| - 2 8.5 4.4 1 9.5 0.4 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) PAS_9 PF13426.1 gi|336253112|ref|YP_004596219.1| - 1.6e-31 108.7 0.3 1.3e-28 99.3 0.1 3.2 3 0 0 3 3 3 2 PAS domain HTH_10 PF04967.7 gi|336253112|ref|YP_004596219.1| - 4.7e-19 67.7 0.0 1e-18 66.6 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain PAS PF00989.19 gi|336253112|ref|YP_004596219.1| - 3.3e-16 59.0 0.0 6.9e-12 45.1 0.0 2.5 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.5 gi|336253112|ref|YP_004596219.1| - 1.3e-14 54.1 2.2 3.2e-10 39.9 0.1 3.1 3 0 0 3 3 3 2 PAS fold PAS_3 PF08447.6 gi|336253112|ref|YP_004596219.1| - 2.2e-08 34.0 0.0 1.4e-07 31.4 0.0 2.3 2 0 0 2 2 2 1 PAS fold PAS_8 PF13188.1 gi|336253112|ref|YP_004596219.1| - 3.3e-08 33.0 0.0 0.00029 20.5 0.0 2.8 2 0 0 2 2 2 2 PAS domain GAF_2 PF13185.1 gi|336253112|ref|YP_004596219.1| - 5.8e-05 23.6 4.4 0.00013 22.5 0.5 2.9 2 1 1 3 3 3 1 GAF domain GAF_3 PF13492.1 gi|336253112|ref|YP_004596219.1| - 0.00043 20.3 0.8 0.0017 18.4 0.0 2.4 3 0 0 3 3 3 1 GAF domain HTH_11 PF08279.7 gi|336253112|ref|YP_004596219.1| - 0.058 13.0 0.0 0.14 11.8 0.0 1.5 1 0 0 1 1 1 0 HTH domain DUF1328 PF07043.8 gi|336253113|ref|YP_004596220.1| - 3.7e-10 39.5 20.4 6.6e-10 38.7 14.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1328) DUF2206 PF09971.4 gi|336253113|ref|YP_004596220.1| - 0.23 10.2 2.1 0.23 10.2 1.5 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2206) AFOR_C PF01314.13 gi|336253114|ref|YP_004596221.1| - 4.1e-124 414.1 1.1 4.9e-124 413.8 0.8 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|336253114|ref|YP_004596221.1| - 1.1e-76 256.7 0.0 1.6e-76 256.1 0.0 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain HTH_20 PF12840.2 gi|336253115|ref|YP_004596222.1| - 2.9e-11 42.9 0.5 4.1e-11 42.5 0.3 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|336253115|ref|YP_004596222.1| - 2.1e-06 27.2 0.1 3.2e-06 26.6 0.1 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain ArsR PF09824.4 gi|336253115|ref|YP_004596222.1| - 2.1e-05 23.9 0.0 2.6e-05 23.6 0.0 1.1 1 0 0 1 1 1 1 ArsR transcriptional regulator TrmB PF01978.14 gi|336253115|ref|YP_004596222.1| - 4.3e-05 23.1 0.1 6.4e-05 22.5 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|336253115|ref|YP_004596222.1| - 0.00051 19.6 0.1 0.00085 18.9 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|336253115|ref|YP_004596222.1| - 0.0026 17.1 0.0 0.0044 16.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.15 gi|336253115|ref|YP_004596222.1| - 0.018 15.1 0.0 0.028 14.5 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator HTH_11 PF08279.7 gi|336253115|ref|YP_004596222.1| - 0.024 14.2 0.1 0.036 13.7 0.1 1.2 1 0 0 1 1 1 0 HTH domain HTH_5 PF01022.15 gi|336253115|ref|YP_004596222.1| - 0.028 14.0 0.0 0.037 13.6 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family FUR PF01475.14 gi|336253115|ref|YP_004596222.1| - 0.047 13.6 0.0 0.057 13.3 0.0 1.2 1 0 0 1 1 1 0 Ferric uptake regulator family HTH_45 PF14947.1 gi|336253115|ref|YP_004596222.1| - 0.085 12.6 0.0 0.11 12.2 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_10 PF04967.7 gi|336253116|ref|YP_004596223.1| - 3.2e-20 71.4 0.1 4.9e-20 70.8 0.1 1.3 1 0 0 1 1 1 1 HTH DNA binding domain GerE PF00196.14 gi|336253116|ref|YP_004596223.1| - 0.049 12.9 0.2 1.9 7.8 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family LexA_DNA_bind PF01726.11 gi|336253116|ref|YP_004596223.1| - 0.053 13.0 0.1 0.22 11.1 0.1 1.9 1 1 0 1 1 1 0 LexA DNA binding domain DUF2560 PF10834.3 gi|336253116|ref|YP_004596223.1| - 0.11 12.4 0.0 0.22 11.4 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2560) Zn-ribbon_8 PF09723.5 gi|336253117|ref|YP_004596224.1| - 3.9e-09 36.3 1.2 4.4e-09 36.1 0.9 1.1 1 0 0 1 1 1 1 Zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|336253117|ref|YP_004596224.1| - 2.2e-06 26.9 1.2 1.7e-05 24.1 0.9 2.0 1 1 1 2 2 2 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|336253117|ref|YP_004596224.1| - 8.9e-06 24.7 3.5 0.003 16.6 0.1 2.1 2 0 0 2 2 2 2 zinc-ribbon domain UPF0547 PF10571.4 gi|336253117|ref|YP_004596224.1| - 3.7e-05 23.3 1.2 0.023 14.3 0.1 2.1 2 0 0 2 2 2 2 Uncharacterised protein family UPF0547 DNA_ligase_ZBD PF03119.11 gi|336253117|ref|YP_004596224.1| - 4.7e-05 22.9 4.3 0.012 15.3 0.1 2.1 2 0 0 2 2 2 2 NAD-dependent DNA ligase C4 zinc finger domain Sgf11 PF08209.6 gi|336253117|ref|YP_004596224.1| - 0.00012 21.3 0.5 0.044 13.0 0.1 2.1 2 0 0 2 2 2 1 Sgf11 (transcriptional regulation protein) TF_Zn_Ribbon PF08271.7 gi|336253117|ref|YP_004596224.1| - 0.00028 20.1 2.5 0.0097 15.2 0.1 2.1 2 0 0 2 2 2 1 TFIIB zinc-binding DZR PF12773.2 gi|336253117|ref|YP_004596224.1| - 0.00037 20.2 1.1 0.00065 19.4 0.8 1.4 1 1 0 1 1 1 1 Double zinc ribbon zf-Di19 PF05605.7 gi|336253117|ref|YP_004596224.1| - 0.00039 20.4 1.6 0.018 15.1 1.1 2.0 1 1 0 1 1 1 1 Drought induced 19 protein (Di19), zinc-binding zf-ISL3 PF14690.1 gi|336253117|ref|YP_004596224.1| - 0.00046 20.1 0.7 0.057 13.4 0.0 2.1 1 1 1 2 2 2 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-dskA_traR PF01258.12 gi|336253117|ref|YP_004596224.1| - 0.00069 19.2 2.4 0.17 11.6 0.4 2.1 2 0 0 2 2 2 1 Prokaryotic dksA/traR C4-type zinc finger YhfH PF14149.1 gi|336253117|ref|YP_004596224.1| - 0.0013 18.4 0.9 0.1 12.4 0.2 2.2 2 0 0 2 2 2 1 YhfH-like protein HypA PF01155.14 gi|336253117|ref|YP_004596224.1| - 0.0015 18.2 0.7 0.0015 18.1 0.5 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family Elf1 PF05129.8 gi|336253117|ref|YP_004596224.1| - 0.0018 17.8 0.4 0.0023 17.6 0.3 1.2 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like zf-C4_Topoisom PF01396.14 gi|336253117|ref|YP_004596224.1| - 0.0023 17.3 1.0 0.18 11.2 0.0 2.1 2 0 0 2 2 2 1 Topoisomerase DNA binding C4 zinc finger Rubredoxin PF00301.15 gi|336253117|ref|YP_004596224.1| - 0.0028 17.4 0.3 1.3 9.0 0.0 2.1 2 0 0 2 2 2 1 Rubredoxin TerY-C PF15616.1 gi|336253117|ref|YP_004596224.1| - 0.0036 17.2 3.0 0.25 11.2 0.1 2.0 1 1 1 2 2 2 1 TerY-C metal binding domain DUF329 PF03884.9 gi|336253117|ref|YP_004596224.1| - 0.0045 16.4 1.6 0.42 10.2 0.1 2.1 1 1 1 2 2 2 1 Domain of unknown function (DUF329) zf-IS66 PF13005.2 gi|336253117|ref|YP_004596224.1| - 0.0063 16.4 0.7 2 8.4 0.0 2.2 2 0 0 2 2 2 1 zinc-finger binding domain of transposase IS66 RNHCP PF12647.2 gi|336253117|ref|YP_004596224.1| - 0.0065 16.2 1.2 0.011 15.5 0.8 1.5 1 1 0 1 1 1 1 RNHCP domain OrfB_Zn_ribbon PF07282.6 gi|336253117|ref|YP_004596224.1| - 0.0075 15.9 1.4 0.88 9.2 0.0 2.0 1 1 1 2 2 2 1 Putative transposase DNA-binding domain DUF1610 PF07754.6 gi|336253117|ref|YP_004596224.1| - 0.0076 16.3 6.0 0.13 12.3 0.5 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF1610) Prok-RING_4 PF14447.1 gi|336253117|ref|YP_004596224.1| - 0.0093 15.4 1.2 0.68 9.5 0.1 2.1 2 0 0 2 2 2 1 Prokaryotic RING finger family 4 zf-LITAF-like PF10601.4 gi|336253117|ref|YP_004596224.1| - 0.01 15.6 0.2 2.9 7.8 0.0 2.1 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain Nudix_N_2 PF14803.1 gi|336253117|ref|YP_004596224.1| - 0.011 15.4 1.6 1.7 8.3 0.1 2.1 2 0 0 2 2 2 0 Nudix N-terminal zf-TFIIB PF13453.1 gi|336253117|ref|YP_004596224.1| - 0.012 14.7 2.5 0.021 14.0 1.8 1.3 1 1 0 1 1 1 0 Transcription factor zinc-finger zinc_ribbon_4 PF13717.1 gi|336253117|ref|YP_004596224.1| - 0.013 15.1 1.0 0.022 14.4 0.7 1.4 1 1 0 1 1 1 0 zinc-ribbon domain Nop10p PF04135.7 gi|336253117|ref|YP_004596224.1| - 0.013 15.1 0.8 0.83 9.4 0.0 2.1 1 1 1 2 2 2 0 Nucleolar RNA-binding protein, Nop10p family zinc-ribbons_6 PF07191.7 gi|336253117|ref|YP_004596224.1| - 0.014 15.1 1.0 0.031 14.0 0.7 1.6 1 1 0 1 1 1 0 zinc-ribbons Kp4 PF09044.5 gi|336253117|ref|YP_004596224.1| - 0.016 15.0 0.1 0.016 14.9 0.1 1.1 1 0 0 1 1 1 0 Kp4 zinc_ribbon_5 PF13719.1 gi|336253117|ref|YP_004596224.1| - 0.016 14.7 1.0 0.027 14.0 0.7 1.4 1 1 0 1 1 1 0 zinc-ribbon domain zf-C3HC4_3 PF13920.1 gi|336253117|ref|YP_004596224.1| - 0.018 14.7 0.7 0.056 13.1 0.5 1.7 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) FYDLN_acid PF09538.5 gi|336253117|ref|YP_004596224.1| - 0.018 15.5 0.5 0.46 11.0 0.4 2.0 1 1 0 1 1 1 0 Protein of unknown function (FYDLN_acid) CpXC PF14353.1 gi|336253117|ref|YP_004596224.1| - 0.019 14.8 1.8 0.23 11.4 0.2 2.0 1 1 1 2 2 2 0 CpXC protein Zn_Tnp_IS91 PF14319.1 gi|336253117|ref|YP_004596224.1| - 0.022 14.2 0.6 0.024 14.1 0.4 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain PhnA_Zn_Ribbon PF08274.7 gi|336253117|ref|YP_004596224.1| - 0.023 14.4 3.9 0.25 11.1 0.8 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon Prok-RING_1 PF14446.1 gi|336253117|ref|YP_004596224.1| - 0.025 14.3 0.3 3.4 7.4 0.0 2.0 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 Zn_Tnp_IS1595 PF12760.2 gi|336253117|ref|YP_004596224.1| - 0.026 14.2 2.4 0.77 9.6 0.2 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain DUF1936 PF09151.5 gi|336253117|ref|YP_004596224.1| - 0.031 13.7 0.1 1.7 8.1 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1936) DUF2072 PF09845.4 gi|336253117|ref|YP_004596224.1| - 0.032 14.1 1.4 0.041 13.7 1.0 1.3 1 1 0 1 1 1 0 Zn-ribbon containing protein (DUF2072) Terminase_GpA PF05876.7 gi|336253117|ref|YP_004596224.1| - 0.038 12.3 0.8 0.038 12.3 0.6 1.0 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) TFIIS_C PF01096.13 gi|336253117|ref|YP_004596224.1| - 0.039 13.5 1.3 4 7.1 0.1 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Cys_rich_CPXG PF14255.1 gi|336253117|ref|YP_004596224.1| - 0.056 13.2 2.0 0.1 12.4 1.4 1.5 1 1 0 1 1 1 0 Cysteine-rich CPXCG zf-NADH-PPase PF09297.6 gi|336253117|ref|YP_004596224.1| - 0.057 12.9 2.0 2.6 7.6 0.0 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Rad50_zn_hook PF04423.9 gi|336253117|ref|YP_004596224.1| - 0.06 12.8 2.8 0.43 10.0 0.1 2.1 1 1 1 2 2 2 0 Rad50 zinc hook motif Ogr_Delta PF04606.7 gi|336253117|ref|YP_004596224.1| - 0.061 12.9 2.2 0.79 9.4 0.1 2.2 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-DNA_Pol PF08996.5 gi|336253117|ref|YP_004596224.1| - 0.061 12.6 0.4 0.066 12.5 0.3 1.2 1 0 0 1 1 1 0 DNA Polymerase alpha zinc finger Acetone_carb_G PF08882.6 gi|336253117|ref|YP_004596224.1| - 0.068 13.2 2.2 0.11 12.4 0.3 1.9 1 1 1 2 2 2 0 Acetone carboxylase gamma subunit zf-CHY PF05495.7 gi|336253117|ref|YP_004596224.1| - 0.073 13.2 0.6 0.071 13.2 0.4 1.1 1 0 0 1 1 1 0 CHY zinc finger Desulfoferrod_N PF06397.7 gi|336253117|ref|YP_004596224.1| - 0.074 12.4 0.5 1.6 8.1 0.0 2.1 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain DUF983 PF06170.7 gi|336253117|ref|YP_004596224.1| - 0.079 13.0 0.7 10 6.3 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF983) zf-Mss51 PF13824.1 gi|336253117|ref|YP_004596224.1| - 0.082 12.7 3.4 0.89 9.4 0.2 2.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 DUF2116 PF09889.4 gi|336253117|ref|YP_004596224.1| - 0.094 12.5 2.0 3.1 7.6 0.2 2.1 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) zf-CSL PF05207.8 gi|336253117|ref|YP_004596224.1| - 0.11 11.9 0.6 0.13 11.7 0.4 1.3 1 0 0 1 1 1 0 CSL zinc finger Lar_restr_allev PF14354.1 gi|336253117|ref|YP_004596224.1| - 0.12 12.7 3.6 3.6 7.9 0.2 2.0 1 1 1 2 2 2 0 Restriction alleviation protein Lar zf-C2H2 PF00096.21 gi|336253117|ref|YP_004596224.1| - 0.12 12.7 0.3 4.7 7.7 0.0 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type Ribosomal_L37ae PF01780.14 gi|336253117|ref|YP_004596224.1| - 0.13 12.1 0.3 0.18 11.7 0.2 1.3 1 1 0 1 1 1 0 Ribosomal L37ae protein family Chordopox_RPO7 PF05864.7 gi|336253117|ref|YP_004596224.1| - 0.14 12.2 0.2 2.4 8.3 0.0 2.1 1 1 0 2 2 2 0 Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7) zf-C2H2_6 PF13912.1 gi|336253117|ref|YP_004596224.1| - 0.14 12.0 1.8 2.4 8.1 0.1 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger DUF1272 PF06906.6 gi|336253117|ref|YP_004596224.1| - 0.17 11.7 2.1 10 6.0 1.5 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF1272) Cys_rich_CPCC PF14206.1 gi|336253117|ref|YP_004596224.1| - 0.22 11.1 1.2 0.28 10.7 0.9 1.3 1 1 0 1 1 1 0 Cysteine-rich CPCC zf-HYPF PF07503.7 gi|336253117|ref|YP_004596224.1| - 0.22 10.9 3.3 0.78 9.2 2.2 1.9 1 1 0 1 1 1 0 HypF finger zf-trcl PF13451.1 gi|336253117|ref|YP_004596224.1| - 0.25 11.0 1.3 7.9 6.1 0.1 2.2 2 0 0 2 2 2 0 Probable zinc-binding domain RRN7 PF11781.3 gi|336253117|ref|YP_004596224.1| - 0.38 10.3 2.4 9.6 5.8 0.1 2.2 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 zf-H2C2_2 PF13465.1 gi|336253117|ref|YP_004596224.1| - 0.41 11.0 2.0 4.7 7.6 0.2 2.2 2 0 0 2 2 2 0 Zinc-finger double domain Prim_Zn_Ribbon PF08273.7 gi|336253117|ref|YP_004596224.1| - 0.41 10.7 3.0 5.4 7.1 0.1 2.1 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase zf-tcix PF14952.1 gi|336253117|ref|YP_004596224.1| - 0.49 9.7 2.7 13 5.2 0.4 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding DUF3797 PF12677.2 gi|336253117|ref|YP_004596224.1| - 0.65 9.6 3.5 5.3 6.7 0.3 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) Pyridox_ox_2 PF12900.2 gi|336253118|ref|YP_004596225.1| - 2.6e-15 56.4 0.0 3.5e-15 56.0 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_oxidase PF01243.15 gi|336253118|ref|YP_004596225.1| - 7.6e-07 29.0 0.0 9.9e-07 28.6 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase AzlD PF05437.7 gi|336253121|ref|YP_004596228.1| - 8.4e-16 57.7 8.6 9.7e-16 57.5 5.9 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport protein (AzlD) UPF0016 PF01169.14 gi|336253121|ref|YP_004596228.1| - 2.2 8.4 6.8 0.35 11.0 0.8 2.2 1 1 1 2 2 2 0 Uncharacterized protein family UPF0016 AzlC PF03591.9 gi|336253122|ref|YP_004596229.1| - 3.5e-43 146.9 10.9 3.5e-43 146.9 7.6 1.5 2 0 0 2 2 2 1 AzlC protein YrhK PF14145.1 gi|336253122|ref|YP_004596229.1| - 0.0068 16.0 0.1 0.03 13.9 0.0 2.2 1 1 1 2 2 2 1 YrhK-like protein PRA1 PF03208.14 gi|336253122|ref|YP_004596229.1| - 0.098 12.0 0.7 0.23 10.7 0.5 1.6 1 0 0 1 1 1 0 PRA1 family protein DUF2628 PF10947.3 gi|336253123|ref|YP_004596230.1| - 0.028 14.2 1.1 0.033 14.0 0.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2628) DUF3353 PF11833.3 gi|336253123|ref|YP_004596230.1| - 0.14 11.5 1.9 0.17 11.3 1.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3353) FA_desaturase PF00487.19 gi|336253123|ref|YP_004596230.1| - 0.93 8.8 3.6 0.91 8.9 2.5 1.0 1 0 0 1 1 1 0 Fatty acid desaturase DUF3040 PF11239.3 gi|336253123|ref|YP_004596230.1| - 2.5 8.1 5.8 4.7 7.3 4.1 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3040) ThiS PF02597.15 gi|336253124|ref|YP_004596231.1| - 3.6e-18 65.7 0.2 4.1e-18 65.5 0.1 1.0 1 0 0 1 1 1 1 ThiS family TFIIF_alpha PF05793.7 gi|336253126|ref|YP_004596233.1| - 4.1 5.6 22.4 4.5 5.5 15.5 1.1 1 0 0 1 1 1 0 Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) NAD_kinase PF01513.16 gi|336253127|ref|YP_004596234.1| - 5.2e-39 133.7 0.2 2.1e-38 131.7 0.2 1.7 1 1 0 1 1 1 1 ATP-NAD kinase Secretin_N PF03958.12 gi|336253127|ref|YP_004596234.1| - 0.00059 19.9 0.1 0.0081 16.3 0.1 2.3 1 1 0 1 1 1 1 Bacterial type II/III secretion system short domain DAGK_cat PF00781.19 gi|336253127|ref|YP_004596234.1| - 0.016 14.6 0.2 0.032 13.6 0.1 1.5 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain KaiC PF06745.8 gi|336253128|ref|YP_004596235.1| - 8.9e-51 172.1 0.0 1.1e-50 171.9 0.0 1.1 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|336253128|ref|YP_004596235.1| - 1e-08 34.8 0.1 1.7e-08 34.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain GvpD PF07088.6 gi|336253128|ref|YP_004596235.1| - 3.5e-05 22.3 0.1 5.8e-05 21.6 0.0 1.2 1 0 0 1 1 1 1 GvpD gas vesicle protein DnaB_C PF03796.10 gi|336253128|ref|YP_004596235.1| - 0.0009 18.2 0.1 0.078 11.8 0.0 2.1 1 1 0 2 2 2 2 DnaB-like helicase C terminal domain AAA_24 PF13479.1 gi|336253128|ref|YP_004596235.1| - 0.0046 16.5 0.0 0.0078 15.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain RecA PF00154.16 gi|336253128|ref|YP_004596235.1| - 0.051 12.6 0.0 0.1 11.6 0.0 1.4 2 0 0 2 2 2 0 recA bacterial DNA recombination protein TrwB_AAD_bind PF10412.4 gi|336253128|ref|YP_004596235.1| - 0.085 11.4 0.0 0.13 10.8 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_14 PF13173.1 gi|336253128|ref|YP_004596235.1| - 0.14 12.0 0.0 0.23 11.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain DUF2075 PF09848.4 gi|336253128|ref|YP_004596235.1| - 0.17 10.8 0.0 0.22 10.4 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) PhoH PF02562.11 gi|336253128|ref|YP_004596235.1| - 0.18 10.9 0.0 0.28 10.3 0.0 1.2 1 0 0 1 1 1 0 PhoH-like protein Usp PF00582.21 gi|336253130|ref|YP_004596237.1| - 7.1e-32 110.5 3.9 7.9e-32 110.3 2.7 1.0 1 0 0 1 1 1 1 Universal stress protein family DNA_photolyase PF00875.13 gi|336253130|ref|YP_004596237.1| - 0.096 12.4 0.0 0.15 11.7 0.0 1.4 1 1 0 1 1 1 0 DNA photolyase ParBc PF02195.13 gi|336253131|ref|YP_004596238.1| - 0.027 14.5 0.4 0.088 12.9 0.0 2.0 2 1 1 3 3 3 0 ParB-like nuclease domain RNA_pol_Rpb5_C PF01191.14 gi|336253132|ref|YP_004596239.1| - 2.5e-26 91.0 1.0 2.7e-26 90.9 0.7 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain DUF3006 PF11213.3 gi|336253132|ref|YP_004596239.1| - 0.0037 16.9 1.4 0.24 11.1 0.9 2.2 1 1 0 1 1 1 1 Protein of unknown function (DUF3006) RNA_pol_Rpb2_1 PF04563.10 gi|336253133|ref|YP_004596240.1| - 2e-55 186.9 0.0 2.4e-55 186.6 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_2 PF04561.9 gi|336253133|ref|YP_004596240.1| - 4.5e-27 94.7 0.1 6.8e-27 94.1 0.1 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_3 PF04565.11 gi|336253133|ref|YP_004596240.1| - 1.9e-22 78.7 0.0 3.6e-22 77.8 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 DUF1359 PF07097.6 gi|336253133|ref|YP_004596240.1| - 0.068 13.2 0.1 2.7 8.0 0.0 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1359) RNA_pol_Rpb2_6 PF00562.23 gi|336253134|ref|YP_004596241.1| - 2.1e-122 408.5 0.0 2.8e-122 408.1 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_7 PF04560.15 gi|336253134|ref|YP_004596241.1| - 4.5e-28 97.3 0.1 8.7e-28 96.4 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_4 PF04566.8 gi|336253134|ref|YP_004596241.1| - 1.6e-25 88.7 0.8 3.2e-25 87.7 0.6 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.12 gi|336253134|ref|YP_004596241.1| - 2.3e-12 46.6 3.7 4.7e-12 45.6 2.6 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 5 OrfB_Zn_ribbon PF07282.6 gi|336253134|ref|YP_004596241.1| - 0.016 14.8 0.7 0.03 13.9 0.5 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DZR PF12773.2 gi|336253134|ref|YP_004596241.1| - 0.036 13.8 0.4 0.064 13.0 0.3 1.3 1 0 0 1 1 1 0 Double zinc ribbon Auto_anti-p27 PF06677.7 gi|336253134|ref|YP_004596241.1| - 0.11 12.2 0.6 0.21 11.3 0.4 1.4 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-ribbon_3 PF13248.1 gi|336253134|ref|YP_004596241.1| - 1.2 8.4 4.7 5.8 6.2 0.4 2.1 1 1 1 2 2 2 0 zinc-ribbon domain RNA_pol_Rpb1_1 PF04997.7 gi|336253135|ref|YP_004596242.1| - 7.6e-89 298.2 0.0 2.6e-88 296.5 0.0 1.9 2 1 0 2 2 2 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.15 gi|336253135|ref|YP_004596242.1| - 2.7e-65 219.3 0.1 4.5e-65 218.6 0.1 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_4 PF05000.12 gi|336253135|ref|YP_004596242.1| - 6.1e-32 109.5 0.0 1.4e-31 108.3 0.0 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_5 PF04998.12 gi|336253135|ref|YP_004596242.1| - 4.4e-29 101.6 0.0 8.4e-29 100.6 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 RNA_pol_Rpb1_3 PF04983.13 gi|336253135|ref|YP_004596242.1| - 2.3e-28 98.9 0.0 4.1e-28 98.0 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 HTH_3 PF01381.17 gi|336253135|ref|YP_004596242.1| - 0.0072 16.1 0.0 0.021 14.6 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix HTH_24 PF13412.1 gi|336253135|ref|YP_004596242.1| - 0.088 12.2 0.0 0.24 10.8 0.0 1.8 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_19 PF12844.2 gi|336253135|ref|YP_004596242.1| - 0.1 12.6 0.1 0.45 10.6 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain RNA_pol_Rpb1_5 PF04998.12 gi|336253136|ref|YP_004596243.1| - 4.7e-48 163.8 0.3 5.9e-48 163.5 0.2 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 DUF4355 PF14265.1 gi|336253136|ref|YP_004596243.1| - 7.2 6.5 6.4 11 5.9 0.0 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF4355) KH_2 PF07650.12 gi|336253137|ref|YP_004596244.1| - 1.1e-11 44.1 0.1 1.3e-05 24.6 0.0 2.2 1 1 0 2 2 2 2 KH domain KH_5 PF13184.1 gi|336253137|ref|YP_004596244.1| - 1.8e-10 40.4 0.2 3.5e-10 39.5 0.0 1.5 2 0 0 2 2 2 1 NusA-like KH domain KH_4 PF13083.1 gi|336253137|ref|YP_004596244.1| - 1.4e-07 31.0 0.1 0.00064 19.3 0.0 2.2 2 0 0 2 2 2 2 KH domain KH_1 PF00013.24 gi|336253137|ref|YP_004596244.1| - 9.5e-06 25.1 0.0 0.0039 16.8 0.0 2.4 2 0 0 2 2 2 2 KH domain KH_3 PF13014.1 gi|336253137|ref|YP_004596244.1| - 0.01 15.5 0.2 0.33 10.6 0.0 2.9 3 0 0 3 3 3 1 KH domain Ribosom_S12_S23 PF00164.20 gi|336253138|ref|YP_004596245.1| - 7e-41 138.4 0.1 8e-41 138.2 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S12/S23 Ribosomal_S7 PF00177.16 gi|336253139|ref|YP_004596246.1| - 4.7e-35 120.3 3.0 5.5e-35 120.1 2.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e GTP_EFTU PF00009.22 gi|336253141|ref|YP_004596248.1| - 2.4e-61 206.4 0.2 4.3e-61 205.6 0.1 1.4 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.13 gi|336253141|ref|YP_004596248.1| - 2.8e-25 88.1 0.0 8.5e-25 86.6 0.0 1.8 1 0 0 1 1 1 1 Elongation factor G, domain IV EFG_C PF00679.19 gi|336253141|ref|YP_004596248.1| - 1e-22 79.7 0.1 9.1e-22 76.7 0.0 2.5 2 0 0 2 2 2 1 Elongation factor G C-terminus EFG_II PF14492.1 gi|336253141|ref|YP_004596248.1| - 7.5e-22 76.9 0.4 2.4e-21 75.3 0.3 1.9 1 0 0 1 1 1 1 Elongation Factor G, domain II GTP_EFTU_D2 PF03144.20 gi|336253141|ref|YP_004596248.1| - 8.3e-19 67.4 1.7 9.8e-18 64.0 0.5 3.0 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|336253141|ref|YP_004596248.1| - 3.1e-05 23.9 0.1 0.00011 22.1 0.0 2.0 2 0 0 2 2 2 1 50S ribosome-binding GTPase Ras PF00071.17 gi|336253141|ref|YP_004596248.1| - 0.13 11.5 0.0 0.31 10.4 0.0 1.5 1 0 0 1 1 1 0 Ras family tRNA-synt_2b PF00587.20 gi|336253142|ref|YP_004596249.1| - 4.5e-35 120.7 0.0 6.6e-35 120.2 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.17 gi|336253142|ref|YP_004596249.1| - 8.6e-29 99.7 10.3 8.6e-29 99.7 7.1 1.5 2 0 0 2 2 1 1 Seryl-tRNA synthetase N-terminal domain DUF342 PF03961.8 gi|336253142|ref|YP_004596249.1| - 0.021 13.2 2.9 0.035 12.5 2.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF342) Mnd1 PF03962.10 gi|336253142|ref|YP_004596249.1| - 0.056 13.1 6.1 0.1 12.2 4.2 1.3 1 0 0 1 1 1 0 Mnd1 family V-SNARE PF05008.10 gi|336253142|ref|YP_004596249.1| - 0.092 12.9 9.9 26 5.0 0.0 3.4 2 1 0 2 2 2 0 Vesicle transport v-SNARE protein N-terminus DUF2450 PF10475.4 gi|336253142|ref|YP_004596249.1| - 0.13 11.1 1.4 0.2 10.5 0.9 1.2 1 0 0 1 1 1 0 Protein of unknown function N-terminal domain (DUF2450) Atg14 PF10186.4 gi|336253142|ref|YP_004596249.1| - 0.65 8.8 4.0 0.99 8.2 2.7 1.2 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 APG6 PF04111.7 gi|336253142|ref|YP_004596249.1| - 0.84 8.6 6.6 1.3 7.9 4.2 1.6 2 0 0 2 2 2 0 Autophagy protein Apg6 IncA PF04156.9 gi|336253142|ref|YP_004596249.1| - 1.1 8.7 8.9 0.22 11.1 3.5 1.7 2 0 0 2 2 2 0 IncA protein OmpH PF03938.9 gi|336253142|ref|YP_004596249.1| - 1.2 9.1 4.0 2 8.3 2.8 1.3 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) V_ATPase_I PF01496.14 gi|336253142|ref|YP_004596249.1| - 1.5 6.5 4.5 5.7 4.6 2.4 1.9 2 0 0 2 2 2 0 V-type ATPase 116kDa subunit family TMF_DNA_bd PF12329.3 gi|336253142|ref|YP_004596249.1| - 6.3 6.6 18.8 0.69 9.7 8.9 2.0 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding Sigma70_r4_2 PF08281.7 gi|336253143|ref|YP_004596250.1| - 0.064 12.7 0.0 0.14 11.6 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 TrkA_C PF02080.16 gi|336253144|ref|YP_004596251.1| - 1.1e-20 72.9 3.4 9.7e-13 47.5 0.2 2.7 2 0 0 2 2 2 2 TrkA-C domain PhoU PF01895.14 gi|336253144|ref|YP_004596251.1| - 1.7e-13 50.8 6.3 3.3e-06 27.4 0.2 2.4 2 0 0 2 2 2 2 PhoU domain PhoU_div PF01865.11 gi|336253144|ref|YP_004596251.1| - 0.00029 20.0 0.7 0.4 9.7 0.0 2.6 2 1 0 2 2 2 2 Protein of unknown function DUF47 Adeno_PX PF05829.7 gi|336253145|ref|YP_004596252.1| - 0.061 12.8 0.6 0.096 12.1 0.4 1.4 1 0 0 1 1 1 0 Adenovirus late L2 mu core protein (Protein X) DUF202 PF02656.10 gi|336253145|ref|YP_004596252.1| - 0.073 13.2 1.9 0.091 12.9 1.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF202) CRCB PF02537.10 gi|336253146|ref|YP_004596253.1| - 7.1e-24 83.9 4.9 8.3e-24 83.7 3.4 1.1 1 0 0 1 1 1 1 CrcB-like protein DUF3956 PF13104.1 gi|336253146|ref|YP_004596253.1| - 1.7 8.2 5.0 1.3 8.6 0.3 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF3956) CRCB PF02537.10 gi|336253147|ref|YP_004596254.1| - 3.2e-18 65.7 6.2 3.7e-18 65.4 4.3 1.1 1 0 0 1 1 1 1 CrcB-like protein FA_desaturase PF00487.19 gi|336253147|ref|YP_004596254.1| - 0.52 9.6 2.8 3.1 7.1 1.1 1.9 1 1 1 2 2 2 0 Fatty acid desaturase Cation_efflux PF01545.16 gi|336253148|ref|YP_004596255.1| - 3.8e-56 190.2 2.8 5e-56 189.8 2.0 1.0 1 0 0 1 1 1 1 Cation efflux family ASL_C2 PF14698.1 gi|336253148|ref|YP_004596255.1| - 0.025 14.6 0.0 0.076 13.0 0.0 1.8 1 0 0 1 1 1 0 Argininosuccinate lyase C-terminal Lactamase_B PF00753.22 gi|336253149|ref|YP_004596256.1| - 1.3e-21 77.1 6.4 2e-21 76.5 4.4 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|336253149|ref|YP_004596256.1| - 3.9e-05 23.2 0.0 6.5e-05 22.5 0.0 1.6 1 1 0 1 1 1 1 Beta-lactamase superfamily domain AMP-binding PF00501.23 gi|336253150|ref|YP_004596257.1| - 6.4e-93 311.3 0.0 7.5e-93 311.1 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme MgtE PF01769.11 gi|336253151|ref|YP_004596258.1| - 4e-22 78.9 11.1 4e-22 78.9 7.7 1.7 2 0 0 2 2 2 1 Divalent cation transporter DUF4131 PF13567.1 gi|336253151|ref|YP_004596258.1| - 7.6 5.9 8.0 12 5.2 5.5 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) MgtE PF01769.11 gi|336253152|ref|YP_004596259.1| - 1.3e-18 67.5 4.9 1.9e-18 67.0 1.9 1.8 2 0 0 2 2 2 1 Divalent cation transporter Transmemb_17 PF09799.4 gi|336253152|ref|YP_004596259.1| - 0.0065 16.7 7.1 0.0065 16.7 4.9 1.7 2 1 0 2 2 2 1 Predicted membrane protein LMBR1 PF04791.11 gi|336253152|ref|YP_004596259.1| - 0.023 13.2 3.7 0.037 12.6 2.6 1.2 1 0 0 1 1 1 0 LMBR1-like membrane protein T_cell_tran_alt PF15128.1 gi|336253152|ref|YP_004596259.1| - 0.085 12.3 0.9 16 4.9 0.2 3.0 3 0 0 3 3 3 0 T-cell leukemia translocation-altered Yip1 PF04893.12 gi|336253152|ref|YP_004596259.1| - 0.23 10.9 19.6 0.8 9.1 13.6 1.7 1 1 0 1 1 1 0 Yip1 domain DUF2427 PF10348.4 gi|336253152|ref|YP_004596259.1| - 1.1 8.8 5.3 0.81 9.2 2.2 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF2427) DUF2391 PF09622.5 gi|336253154|ref|YP_004596261.1| - 0.0011 18.2 1.9 0.0014 17.8 1.3 1.1 1 0 0 1 1 1 1 Putative integral membrane protein (DUF2391) DUF1453 PF07301.6 gi|336253154|ref|YP_004596261.1| - 0.03 14.1 0.5 0.057 13.2 0.1 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1453) CorA PF01544.13 gi|336253154|ref|YP_004596261.1| - 0.066 12.2 0.2 0.11 11.4 0.1 1.4 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein Sensor_TM1 PF13755.1 gi|336253154|ref|YP_004596261.1| - 0.097 12.1 0.2 0.2 11.2 0.2 1.4 1 0 0 1 1 1 0 Sensor N-terminal transmembrane domain DUF2721 PF11026.3 gi|336253154|ref|YP_004596261.1| - 9.9 5.8 8.1 11 5.6 3.8 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF2721) Peripla_BP_2 PF01497.13 gi|336253155|ref|YP_004596262.1| - 2.5e-15 56.2 0.0 3.4e-15 55.8 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein TAT_signal PF10518.4 gi|336253155|ref|YP_004596262.1| - 0.073 13.1 0.5 0.18 11.8 0.4 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence PLDc_N PF13396.1 gi|336253156|ref|YP_004596263.1| - 0.016 14.8 4.3 0.016 14.8 3.0 1.8 1 1 1 2 2 2 0 Phospholipase_D-nuclease N-terminal DUF454 PF04304.8 gi|336253156|ref|YP_004596263.1| - 0.11 12.5 1.5 0.15 12.1 0.1 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF454) Thiolase_N PF00108.18 gi|336253157|ref|YP_004596264.1| - 7.2e-79 264.4 3.2 1.1e-78 263.8 2.2 1.2 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.13 gi|336253157|ref|YP_004596264.1| - 2.8e-43 146.2 0.2 6.7e-43 145.0 0.0 1.7 2 0 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.21 gi|336253157|ref|YP_004596264.1| - 3.1e-06 26.8 1.1 8.8e-06 25.3 0.7 1.8 1 0 0 1 1 1 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.5 gi|336253157|ref|YP_004596264.1| - 0.051 13.2 7.1 0.14 11.8 0.1 2.6 3 0 0 3 3 3 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BPL_LplA_LipB PF03099.14 gi|336253160|ref|YP_004596267.1| - 0.0026 17.7 0.0 0.0051 16.8 0.0 1.4 1 1 0 1 1 1 1 Biotin/lipoate A/B protein ligase family Peptidase_M23 PF01551.17 gi|336253161|ref|YP_004596268.1| - 0.0081 16.1 0.0 0.017 15.1 0.0 1.6 1 0 0 1 1 1 1 Peptidase family M23 Serpin PF00079.15 gi|336253162|ref|YP_004596269.1| - 1.8e-108 362.9 0.0 2.2e-108 362.7 0.0 1.0 1 0 0 1 1 1 1 Serpin (serine protease inhibitor) K_channel_TID PF07941.6 gi|336253162|ref|YP_004596269.1| - 2.4 8.4 6.5 0.19 11.9 0.8 2.0 2 0 0 2 2 2 0 Potassium channel Kv1.4 tandem inactivation domain p450 PF00067.17 gi|336253163|ref|YP_004596270.1| - 9.2e-86 288.1 0.0 1.1e-85 287.8 0.0 1.0 1 0 0 1 1 1 1 Cytochrome P450 Sdh5 PF03937.11 gi|336253163|ref|YP_004596270.1| - 0.00097 18.7 0.1 0.0021 17.6 0.1 1.6 1 0 0 1 1 1 1 Flavinator of succinate dehydrogenase 4HBT PF03061.17 gi|336253164|ref|YP_004596271.1| - 3.5e-13 49.4 0.0 6e-13 48.7 0.0 1.3 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.1 gi|336253164|ref|YP_004596271.1| - 1.1e-05 25.4 0.0 2.1e-05 24.5 0.0 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF4442) COX2 PF00116.15 gi|336253165|ref|YP_004596272.1| - 6.9e-16 58.1 0.2 1.7e-15 56.9 0.0 1.7 2 0 0 2 2 2 1 Cytochrome C oxidase subunit II, periplasmic domain Cupredoxin_1 PF13473.1 gi|336253165|ref|YP_004596272.1| - 2.1e-08 33.9 0.0 4.9e-08 32.8 0.0 1.6 1 0 0 1 1 1 1 Cupredoxin-like domain TAT_signal PF10518.4 gi|336253165|ref|YP_004596272.1| - 1.6e-05 24.5 3.3 2.9e-05 23.6 2.3 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence NosD PF05048.8 gi|336253167|ref|YP_004596274.1| - 4e-49 166.8 13.9 9.3e-48 162.4 9.4 2.1 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|336253167|ref|YP_004596274.1| - 3.4e-26 91.9 17.0 6e-20 71.5 2.3 3.1 2 1 1 3 3 3 2 Right handed beta helix region DUF1565 PF07602.6 gi|336253167|ref|YP_004596274.1| - 1e-08 34.6 11.5 0.00049 19.3 0.1 2.5 1 1 2 3 3 3 3 Protein of unknown function (DUF1565) eIF-6 PF01912.13 gi|336253167|ref|YP_004596274.1| - 0.00025 20.2 2.3 0.00044 19.3 1.6 1.3 1 0 0 1 1 1 1 eIF-6 family ABC_tran PF00005.22 gi|336253168|ref|YP_004596275.1| - 1.7e-28 99.6 0.0 2.8e-28 98.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|336253168|ref|YP_004596275.1| - 7.8e-10 39.1 0.0 3.8e-06 27.0 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_10 PF12846.2 gi|336253168|ref|YP_004596275.1| - 0.012 15.0 0.1 3.1 7.1 0.0 2.3 2 0 0 2 2 2 0 AAA-like domain SMC_N PF02463.14 gi|336253168|ref|YP_004596275.1| - 0.027 13.7 0.1 3.7 6.7 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|336253168|ref|YP_004596275.1| - 0.1 12.1 0.2 0.18 11.3 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|336253168|ref|YP_004596275.1| - 0.18 12.1 0.3 0.29 11.4 0.2 1.2 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.1 gi|336253168|ref|YP_004596275.1| - 0.24 10.3 0.0 3.8 6.4 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain ABC2_membrane_2 PF12679.2 gi|336253169|ref|YP_004596276.1| - 2.1e-21 76.0 19.1 2.7e-21 75.6 13.3 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|336253169|ref|YP_004596276.1| - 0.00011 21.4 21.3 0.00015 20.9 13.5 1.8 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|336253169|ref|YP_004596276.1| - 0.00081 18.5 7.4 0.00099 18.2 5.2 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|336253169|ref|YP_004596276.1| - 0.0025 17.1 0.4 0.0056 15.9 0.3 1.7 1 1 0 1 1 1 1 ABC-2 family transporter protein COPI_assoc PF08507.5 gi|336253169|ref|YP_004596276.1| - 2.8 7.6 5.8 0.59 9.8 1.4 1.8 2 0 0 2 2 2 0 COPI associated protein NosL PF05573.7 gi|336253170|ref|YP_004596277.1| - 6.6e-32 110.2 0.0 1e-31 109.6 0.0 1.2 1 0 0 1 1 1 1 NosL TAT_signal PF10518.4 gi|336253170|ref|YP_004596277.1| - 3.4 7.9 7.3 10 6.4 5.1 1.9 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence SPW PF03779.9 gi|336253172|ref|YP_004596279.1| - 0.38 10.1 4.2 0.87 9.0 2.9 1.7 1 1 0 1 1 1 0 SPW repeat Isochorismatase PF00857.15 gi|336253173|ref|YP_004596280.1| - 8.3e-50 169.1 0.0 9.3e-50 168.9 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family Peptidase_MA_2 PF13485.1 gi|336253174|ref|YP_004596281.1| - 6.3e-12 45.6 0.0 1.8e-11 44.1 0.0 1.8 1 0 0 1 1 1 1 Peptidase MA superfamily Peptidase_M76 PF09768.4 gi|336253174|ref|YP_004596281.1| - 0.00081 18.9 0.0 0.0013 18.2 0.0 1.3 1 0 0 1 1 1 1 Peptidase M76 family DUF955 PF06114.8 gi|336253174|ref|YP_004596281.1| - 0.16 11.7 0.0 0.3 10.8 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF955) Peptidase_M13 PF01431.16 gi|336253174|ref|YP_004596281.1| - 0.19 10.8 0.0 6.5 5.8 0.0 2.2 2 0 0 2 2 2 0 Peptidase family M13 Peptidase_MA_2 PF13485.1 gi|336253175|ref|YP_004596282.1| - 3.3e-08 33.6 1.3 4.6e-08 33.1 0.1 1.8 2 0 0 2 2 2 1 Peptidase MA superfamily Glyco_hydro_20b PF02838.10 gi|336253175|ref|YP_004596282.1| - 0.0015 19.0 0.0 0.0041 17.6 0.0 1.7 1 0 0 1 1 1 1 Glycosyl hydrolase family 20, domain 2 Peptidase_M76 PF09768.4 gi|336253175|ref|YP_004596282.1| - 0.053 12.9 0.0 0.083 12.3 0.0 1.2 1 0 0 1 1 1 0 Peptidase M76 family DUF4157 PF13699.1 gi|336253175|ref|YP_004596282.1| - 0.064 13.3 0.0 0.21 11.7 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4157) DUF2268 PF10026.4 gi|336253175|ref|YP_004596282.1| - 0.15 11.4 0.0 0.27 10.5 0.0 1.3 1 0 0 1 1 1 0 Predicted Zn-dependent protease (DUF2268) QRPTase_C PF01729.14 gi|336253176|ref|YP_004596283.1| - 6.3e-16 58.3 0.0 8.7e-16 57.8 0.0 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.11 gi|336253176|ref|YP_004596283.1| - 0.0005 19.8 0.0 0.0016 18.2 0.0 1.9 2 0 0 2 2 2 1 Quinolinate phosphoribosyl transferase, N-terminal domain AMMECR1 PF01871.12 gi|336253177|ref|YP_004596284.1| - 6e-48 162.2 0.0 7e-48 161.9 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 Cadherin-like PF12733.2 gi|336253180|ref|YP_004596287.1| - 0.17 12.2 1.5 0.29 11.4 1.0 1.6 1 1 0 1 1 1 0 Cadherin-like beta sandwich domain HTH_10 PF04967.7 gi|336253181|ref|YP_004596288.1| - 2e-08 33.6 0.1 3.4e-08 32.9 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_AraC PF00165.18 gi|336253181|ref|YP_004596288.1| - 0.012 15.4 0.1 0.023 14.5 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix proteins, AraC family UPF0122 PF04297.9 gi|336253181|ref|YP_004596288.1| - 0.012 15.6 0.0 0.023 14.7 0.0 1.4 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like MarR_2 PF12802.2 gi|336253181|ref|YP_004596288.1| - 0.022 14.3 0.0 0.06 13.0 0.0 1.7 1 0 0 1 1 1 0 MarR family HTH_1 PF00126.22 gi|336253181|ref|YP_004596288.1| - 0.039 13.6 0.0 0.12 12.1 0.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_20 PF12840.2 gi|336253182|ref|YP_004596289.1| - 5.4e-05 22.9 0.6 0.00045 19.9 0.4 2.1 1 1 0 1 1 1 1 Helix-turn-helix domain tRNA_anti-codon PF01336.20 gi|336253183|ref|YP_004596290.1| - 3.6e-32 110.0 6.6 2e-13 49.9 0.1 3.5 3 0 0 3 3 3 3 OB-fold nucleic acid binding domain SSB PF00436.20 gi|336253183|ref|YP_004596290.1| - 9.6e-05 22.2 0.3 1.8 8.4 0.0 3.4 3 0 0 3 3 3 2 Single-strand binding protein family Rep_fac-A_C PF08646.5 gi|336253183|ref|YP_004596290.1| - 0.00023 20.8 0.0 1.7 8.3 0.0 3.2 3 0 0 3 3 3 2 Replication factor-A C terminal domain tRNA_anti-like PF12869.2 gi|336253183|ref|YP_004596290.1| - 0.0048 16.3 0.1 0.39 10.1 0.0 3.7 3 1 2 5 5 5 1 tRNA_anti-like CBFD_NFYB_HMF PF00808.18 gi|336253184|ref|YP_004596291.1| - 2.4e-27 94.7 0.3 1.7e-13 50.3 0.1 2.0 2 0 0 2 2 2 2 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.19 gi|336253184|ref|YP_004596291.1| - 5.3e-18 64.9 0.1 1.1e-11 44.6 0.0 2.0 2 0 0 2 2 2 2 Core histone H2A/H2B/H3/H4 CENP-S PF15630.1 gi|336253184|ref|YP_004596291.1| - 9.8e-05 22.4 0.9 0.00022 21.3 0.2 1.8 2 0 0 2 2 2 1 Kinetochore component CENP-S TAF PF02969.12 gi|336253184|ref|YP_004596291.1| - 0.021 14.7 1.8 0.41 10.6 0.1 2.3 2 0 0 2 2 2 0 TATA box binding protein associated factor (TAF) TFIID-18kDa PF02269.11 gi|336253184|ref|YP_004596291.1| - 0.032 14.0 0.3 3.7 7.4 0.0 2.1 2 0 0 2 2 2 0 Transcription initiation factor IID, 18kD subunit Hist_deacetyl PF00850.14 gi|336253185|ref|YP_004596292.1| - 2.8e-85 286.3 0.4 3.5e-85 286.0 0.2 1.0 1 0 0 1 1 1 1 Histone deacetylase domain tRNA_NucTransf2 PF09249.6 gi|336253186|ref|YP_004596293.1| - 2.2e-42 143.5 0.0 3.4e-42 142.9 0.0 1.3 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.18 gi|336253186|ref|YP_004596293.1| - 2.5e-13 50.1 0.0 6.2e-13 48.8 0.0 1.7 1 0 0 1 1 1 1 Nucleotidyltransferase domain LEM PF03020.10 gi|336253186|ref|YP_004596293.1| - 0.064 12.7 0.1 2.1 7.8 0.0 2.5 2 0 0 2 2 2 0 LEM domain PDDEXK_5 PF11645.3 gi|336253187|ref|YP_004596294.1| - 0.01 15.4 0.0 0.012 15.3 0.0 1.1 1 0 0 1 1 1 0 PD-(D/E)XK endonuclease MoCF_biosynth PF00994.19 gi|336253188|ref|YP_004596295.1| - 3e-31 107.7 0.0 3.9e-31 107.4 0.0 1.1 1 0 0 1 1 1 1 Probable molybdopterin binding domain tRNA_anti-codon PF01336.20 gi|336253189|ref|YP_004596296.1| - 0.0052 16.6 0.1 0.025 14.4 0.0 2.2 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain Notch PF00066.12 gi|336253189|ref|YP_004596296.1| - 0.076 13.2 0.3 0.11 12.7 0.2 1.3 1 0 0 1 1 1 0 LNR domain TFIID_30kDa PF03540.8 gi|336253189|ref|YP_004596296.1| - 0.091 12.6 0.0 0.2 11.5 0.0 1.6 1 0 0 1 1 1 0 Transcription initiation factor TFIID 23-30kDa subunit Fn3-like PF14310.1 gi|336253190|ref|YP_004596297.1| - 0.33 10.9 2.1 0.4 10.6 0.2 2.0 2 0 0 2 2 2 0 Fibronectin type III-like domain Abhydrolase_2 PF02230.11 gi|336253191|ref|YP_004596298.1| - 1.6e-19 70.2 0.0 1.1e-18 67.5 0.0 1.9 1 1 0 1 1 1 1 Phospholipase/Carboxylesterase Abhydrolase_6 PF12697.2 gi|336253191|ref|YP_004596298.1| - 4e-15 56.3 2.5 5.4e-10 39.5 0.3 2.1 1 1 1 2 2 2 2 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|336253191|ref|YP_004596298.1| - 8e-14 51.6 0.0 1.2e-13 51.0 0.0 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S9 PF00326.16 gi|336253191|ref|YP_004596298.1| - 1.6e-07 30.7 0.0 0.00076 18.7 0.0 2.3 1 1 1 2 2 2 2 Prolyl oligopeptidase family FSH1 PF03959.8 gi|336253191|ref|YP_004596298.1| - 6.7e-05 22.4 0.0 0.00018 21.0 0.0 1.6 1 1 0 1 1 1 1 Serine hydrolase (FSH1) Abhydrolase_1 PF00561.15 gi|336253191|ref|YP_004596298.1| - 0.0012 18.4 0.0 0.49 9.9 0.0 2.1 1 1 0 2 2 2 2 alpha/beta hydrolase fold DLH PF01738.13 gi|336253191|ref|YP_004596298.1| - 0.0014 17.9 0.0 0.0026 17.0 0.0 1.6 1 1 0 1 1 1 1 Dienelactone hydrolase family Abhydrolase_3 PF07859.8 gi|336253191|ref|YP_004596298.1| - 0.0045 16.5 0.1 0.97 8.9 0.0 2.2 1 1 1 2 2 2 2 alpha/beta hydrolase fold Esterase PF00756.15 gi|336253191|ref|YP_004596298.1| - 0.039 13.3 0.0 0.052 12.9 0.0 1.3 1 0 0 1 1 1 0 Putative esterase AP_endonuc_2 PF01261.19 gi|336253191|ref|YP_004596298.1| - 0.05 12.8 0.0 0.12 11.6 0.0 1.6 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel PE-PPE PF08237.6 gi|336253191|ref|YP_004596298.1| - 0.078 12.3 0.0 0.13 11.6 0.0 1.3 1 0 0 1 1 1 0 PE-PPE domain Glyoxalase PF00903.20 gi|336253192|ref|YP_004596299.1| - 3e-26 91.8 3.2 1.7e-12 47.4 0.1 2.2 2 0 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.2 gi|336253192|ref|YP_004596299.1| - 2.1e-10 41.1 3.5 0.00011 22.8 0.2 2.2 2 0 0 2 2 2 2 Glyoxalase-like domain Glyoxalase_4 PF13669.1 gi|336253192|ref|YP_004596299.1| - 3.6e-05 23.7 2.3 0.036 14.0 0.1 2.6 1 1 2 3 3 3 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RHH_1 PF01402.16 gi|336253193|ref|YP_004596300.1| - 3.8e-05 23.3 0.1 3.8e-05 23.3 0.0 2.4 3 1 0 3 3 3 1 Ribbon-helix-helix protein, copG family AKNA PF12443.3 gi|336253193|ref|YP_004596300.1| - 0.063 13.3 1.8 0.11 12.4 0.5 1.8 2 0 0 2 2 2 0 AT-hook-containing transcription factor DUF3562 PF12085.3 gi|336253193|ref|YP_004596300.1| - 0.076 12.8 0.7 0.16 11.8 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3562) IncA PF04156.9 gi|336253193|ref|YP_004596300.1| - 0.69 9.4 4.8 0.84 9.1 3.2 1.2 1 1 0 1 1 1 0 IncA protein DUF2238 PF09997.4 gi|336253195|ref|YP_004596302.1| - 0.32 10.3 17.9 0.016 14.6 2.1 3.9 3 2 1 4 4 4 0 Predicted membrane protein (DUF2238) Aldo_ket_red PF00248.16 gi|336253196|ref|YP_004596303.1| - 1.2e-63 214.6 0.0 1.4e-63 214.3 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family ABC_membrane PF00664.18 gi|336253197|ref|YP_004596304.1| - 5.7e-35 121.0 0.1 7.5e-35 120.6 0.1 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.22 gi|336253197|ref|YP_004596304.1| - 1.2e-34 119.5 0.0 2e-34 118.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_16 PF13191.1 gi|336253197|ref|YP_004596304.1| - 9.9e-05 22.3 0.1 0.00021 21.3 0.1 1.6 1 0 0 1 1 1 1 AAA ATPase domain Zeta_toxin PF06414.7 gi|336253197|ref|YP_004596304.1| - 0.0001 21.4 0.0 0.00019 20.6 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_21 PF13304.1 gi|336253197|ref|YP_004596304.1| - 0.00066 19.7 0.0 0.0059 16.6 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|336253197|ref|YP_004596304.1| - 0.00071 20.3 1.1 0.0021 18.8 0.7 2.0 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|336253197|ref|YP_004596304.1| - 0.007 15.8 1.4 0.01 15.3 0.0 2.0 2 0 0 2 2 2 1 P-loop containing region of AAA domain DUF3353 PF11833.3 gi|336253197|ref|YP_004596304.1| - 0.01 15.2 0.0 0.072 12.5 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3353) SMC_N PF02463.14 gi|336253197|ref|YP_004596304.1| - 0.013 14.7 0.4 0.3 10.2 0.1 2.1 1 1 1 2 2 2 0 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|336253197|ref|YP_004596304.1| - 0.013 14.7 0.0 0.022 13.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_30 PF13604.1 gi|336253197|ref|YP_004596304.1| - 0.014 15.0 0.2 0.063 12.8 0.1 2.1 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|336253197|ref|YP_004596304.1| - 0.016 15.3 0.6 0.098 12.7 0.1 2.4 1 1 1 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|336253197|ref|YP_004596304.1| - 0.016 15.4 0.1 0.05 13.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|336253197|ref|YP_004596304.1| - 0.03 13.7 0.4 0.094 12.1 0.3 1.7 1 1 0 1 1 1 0 AAA domain ABC_ATPase PF09818.4 gi|336253197|ref|YP_004596304.1| - 0.033 12.7 0.1 0.033 12.7 0.1 1.4 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_33 PF13671.1 gi|336253197|ref|YP_004596304.1| - 0.047 13.5 0.0 0.092 12.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain DUF87 PF01935.12 gi|336253197|ref|YP_004596304.1| - 0.065 13.0 0.1 0.13 12.0 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function DUF87 FtsK_SpoIIIE PF01580.13 gi|336253197|ref|YP_004596304.1| - 0.12 11.8 0.0 0.56 9.6 0.0 1.9 2 0 0 2 2 2 0 FtsK/SpoIIIE family MMR_HSR1 PF01926.18 gi|336253197|ref|YP_004596304.1| - 0.13 12.2 0.0 0.32 10.9 0.0 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase DUF2075 PF09848.4 gi|336253197|ref|YP_004596304.1| - 0.14 11.0 0.0 0.22 10.4 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_14 PF13173.1 gi|336253197|ref|YP_004596304.1| - 0.15 11.9 0.0 0.63 9.9 0.0 2.0 2 1 0 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|336253197|ref|YP_004596304.1| - 0.18 12.1 0.0 0.44 10.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain HTH_20 PF12840.2 gi|336253198|ref|YP_004596305.1| - 0.043 13.6 0.0 0.12 12.2 0.0 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain DUF192 PF02643.10 gi|336253199|ref|YP_004596306.1| - 1.5e-27 95.3 0.0 1.8e-27 95.1 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 SHR3_chaperone PF08229.6 gi|336253199|ref|YP_004596306.1| - 0.034 13.1 0.1 0.045 12.6 0.0 1.2 1 0 0 1 1 1 0 ER membrane protein SH3 ABC_tran PF00005.22 gi|336253200|ref|YP_004596307.1| - 6.1e-38 130.2 0.0 1.3e-37 129.1 0.0 1.6 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.18 gi|336253200|ref|YP_004596307.1| - 4.2e-37 128.0 1.7 5.5e-37 127.6 1.1 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region AAA_21 PF13304.1 gi|336253200|ref|YP_004596307.1| - 4.6e-06 26.8 0.0 0.00014 21.9 0.0 2.5 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|336253200|ref|YP_004596307.1| - 0.00013 21.1 0.0 0.00024 20.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|336253200|ref|YP_004596307.1| - 0.00025 21.8 0.0 0.0016 19.2 0.1 2.3 2 1 0 2 2 2 1 AAA domain Zeta_toxin PF06414.7 gi|336253200|ref|YP_004596307.1| - 0.00038 19.5 0.0 0.00083 18.5 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_22 PF13401.1 gi|336253200|ref|YP_004596307.1| - 0.0009 19.3 0.1 0.0044 17.1 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|336253200|ref|YP_004596307.1| - 0.00094 19.4 0.0 0.0031 17.8 0.0 2.0 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|336253200|ref|YP_004596307.1| - 0.001 19.1 0.0 0.0022 17.9 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|336253200|ref|YP_004596307.1| - 0.0037 16.7 0.1 0.011 15.2 0.1 1.8 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF2107 PF09880.4 gi|336253200|ref|YP_004596307.1| - 0.0039 17.0 0.4 0.011 15.6 0.3 1.7 1 0 0 1 1 1 1 Predicted membrane protein (DUF2107) SMC_N PF02463.14 gi|336253200|ref|YP_004596307.1| - 0.0044 16.2 1.1 0.13 11.4 0.1 2.1 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_33 PF13671.1 gi|336253200|ref|YP_004596307.1| - 0.0098 15.7 0.0 0.027 14.3 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|336253200|ref|YP_004596307.1| - 0.014 14.9 0.3 0.087 12.3 0.2 2.1 1 1 0 1 1 1 0 AAA domain ABC_ATPase PF09818.4 gi|336253200|ref|YP_004596307.1| - 0.029 12.9 0.2 0.052 12.1 0.1 1.3 1 0 0 1 1 1 0 Predicted ATPase of the ABC class Guanylate_kin PF00625.16 gi|336253200|ref|YP_004596307.1| - 0.03 13.7 0.0 0.39 10.1 0.0 2.7 2 1 0 2 2 2 0 Guanylate kinase AAA_10 PF12846.2 gi|336253200|ref|YP_004596307.1| - 0.034 13.5 0.7 0.11 11.9 0.5 1.9 1 1 0 1 1 1 0 AAA-like domain AAA_14 PF13173.1 gi|336253200|ref|YP_004596307.1| - 0.049 13.5 0.1 0.17 11.8 0.0 2.0 2 1 0 2 2 1 0 AAA domain AAA_25 PF13481.1 gi|336253200|ref|YP_004596307.1| - 0.061 12.7 0.1 0.16 11.3 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|336253200|ref|YP_004596307.1| - 0.077 12.7 0.1 0.48 10.1 0.0 2.2 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) T2SE PF00437.15 gi|336253200|ref|YP_004596307.1| - 0.079 11.8 0.0 0.16 10.8 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA PF00004.24 gi|336253200|ref|YP_004596307.1| - 0.089 12.9 0.0 0.57 10.3 0.0 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.1 gi|336253200|ref|YP_004596307.1| - 0.092 13.0 0.0 0.2 11.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|336253200|ref|YP_004596307.1| - 0.14 11.3 0.0 0.25 10.4 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI MobB PF03205.9 gi|336253200|ref|YP_004596307.1| - 0.15 11.7 0.2 0.46 10.1 0.1 1.9 1 1 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B SART-1 PF03343.8 gi|336253200|ref|YP_004596307.1| - 0.19 10.0 0.3 0.28 9.4 0.2 1.2 1 0 0 1 1 1 0 SART-1 family SbcCD_C PF13558.1 gi|336253200|ref|YP_004596307.1| - 0.3 11.0 2.0 1.9 8.4 0.4 2.8 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit Creatininase PF02633.9 gi|336253202|ref|YP_004596309.1| - 1.5e-72 243.5 1.4 1.7e-72 243.3 1.0 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase DUF4398 PF14346.1 gi|336253203|ref|YP_004596310.1| - 5.8 7.0 11.5 1 9.4 3.7 2.5 1 1 0 2 2 2 0 Domain of unknown function (DUF4398) DUF381 PF04038.7 gi|336253204|ref|YP_004596311.1| - 2.7e-21 75.3 0.5 3.8e-21 74.8 0.4 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF381) DUF372 PF04036.7 gi|336253204|ref|YP_004596311.1| - 2.1e-20 71.9 1.1 3.4e-20 71.2 0.8 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF372) GPW_gp25 PF04965.9 gi|336253204|ref|YP_004596311.1| - 0.0081 15.6 0.0 0.0097 15.4 0.0 1.2 1 0 0 1 1 1 1 Gene 25-like lysozyme Epimerase PF01370.16 gi|336253205|ref|YP_004596312.1| - 2.4e-23 82.7 0.0 5e-23 81.7 0.0 1.3 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|336253205|ref|YP_004596312.1| - 4.4e-15 55.1 0.0 5.6e-15 54.7 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.7 gi|336253205|ref|YP_004596312.1| - 1.5e-14 53.5 0.0 6.7e-14 51.4 0.0 1.8 2 0 0 2 2 2 1 Male sterility protein NAD_binding_10 PF13460.1 gi|336253205|ref|YP_004596312.1| - 1.1e-13 51.6 0.0 1.4e-13 51.2 0.0 1.2 1 0 0 1 1 1 1 NADH(P)-binding Polysacc_synt_2 PF02719.10 gi|336253205|ref|YP_004596312.1| - 3.1e-11 42.7 0.1 2.3e-07 30.0 0.4 2.8 2 1 0 2 2 2 2 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.12 gi|336253205|ref|YP_004596312.1| - 2.1e-05 23.5 0.0 8.1e-05 21.6 0.0 1.7 1 1 0 1 1 1 1 RmlD substrate binding domain NmrA PF05368.8 gi|336253205|ref|YP_004596312.1| - 0.00014 21.2 0.0 0.00032 20.0 0.0 1.6 2 0 0 2 2 2 1 NmrA-like family adh_short PF00106.20 gi|336253205|ref|YP_004596312.1| - 0.0072 16.2 5.2 0.024 14.5 1.8 2.5 2 1 0 2 2 2 1 short chain dehydrogenase TrkA_N PF02254.13 gi|336253205|ref|YP_004596312.1| - 0.072 13.0 0.0 0.13 12.2 0.0 1.5 1 0 0 1 1 1 0 TrkA-N domain Saccharop_dh PF03435.13 gi|336253205|ref|YP_004596312.1| - 0.082 11.8 0.0 0.1 11.5 0.0 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase KR PF08659.5 gi|336253205|ref|YP_004596312.1| - 0.17 11.5 0.4 9.6 5.8 0.2 2.4 2 1 0 2 2 2 0 KR domain zf-FCS PF06467.9 gi|336253206|ref|YP_004596313.1| - 0.00063 19.3 0.5 0.0013 18.3 0.3 1.5 1 1 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif DUF329 PF03884.9 gi|336253206|ref|YP_004596313.1| - 0.0033 16.9 0.8 0.0033 16.9 0.6 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF329) OrfB_Zn_ribbon PF07282.6 gi|336253206|ref|YP_004596313.1| - 0.049 13.3 0.2 0.05 13.2 0.1 1.0 1 0 0 1 1 1 0 Putative transposase DNA-binding domain NinG PF05766.7 gi|336253206|ref|YP_004596313.1| - 0.065 12.9 0.2 0.065 12.9 0.1 1.0 1 0 0 1 1 1 0 Bacteriophage Lambda NinG protein RPAP2_Rtr1 PF04181.8 gi|336253206|ref|YP_004596313.1| - 0.091 12.8 0.6 0.11 12.5 0.4 1.3 1 1 0 1 1 1 0 Rtr1/RPAP2 family Zn-ribbon_8 PF09723.5 gi|336253206|ref|YP_004596313.1| - 0.31 11.0 1.8 0.37 10.7 1.3 1.2 1 0 0 1 1 1 0 Zinc ribbon domain DUF309 PF03745.9 gi|336253207|ref|YP_004596314.1| - 1.4e-16 59.7 5.2 2e-16 59.1 3.6 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF309) Peptidase_M29 PF02073.10 gi|336253208|ref|YP_004596315.1| - 9.9e-112 373.5 0.1 1.1e-111 373.4 0.1 1.0 1 0 0 1 1 1 1 Thermophilic metalloprotease (M29) DUF4388 PF14332.1 gi|336253208|ref|YP_004596315.1| - 0.031 14.1 0.0 0.075 12.8 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4388) DUF165 PF02592.10 gi|336253209|ref|YP_004596316.1| - 6.3e-43 146.4 6.6 6.3e-43 146.4 4.6 1.6 2 0 0 2 2 2 1 Uncharacterized ACR, YhhQ family COG1738 CSD PF00313.17 gi|336253210|ref|YP_004596317.1| - 2.6e-19 68.7 0.1 2.9e-19 68.6 0.1 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain S1-like PF14444.1 gi|336253210|ref|YP_004596317.1| - 0.0098 15.6 0.1 0.013 15.1 0.1 1.3 1 1 0 1 1 1 1 S1-like OB_RNB PF08206.6 gi|336253210|ref|YP_004596317.1| - 0.047 13.2 2.3 0.067 12.7 1.6 1.2 1 0 0 1 1 1 0 Ribonuclease B OB domain PadR PF03551.9 gi|336253211|ref|YP_004596318.1| - 1.1e-12 47.5 0.1 1.3e-12 47.3 0.1 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|336253211|ref|YP_004596318.1| - 0.00044 20.5 0.0 0.00054 20.2 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|336253211|ref|YP_004596318.1| - 0.0005 19.8 0.1 0.00069 19.3 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DUF1495 PF07381.6 gi|336253211|ref|YP_004596318.1| - 0.013 15.1 0.0 0.016 14.8 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) HTH_34 PF13601.1 gi|336253211|ref|YP_004596318.1| - 0.028 14.4 0.0 0.033 14.2 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain FUR PF01475.14 gi|336253211|ref|YP_004596318.1| - 0.054 13.4 0.0 0.061 13.2 0.0 1.1 1 0 0 1 1 1 0 Ferric uptake regulator family TrmB PF01978.14 gi|336253211|ref|YP_004596318.1| - 0.1 12.3 0.0 0.15 11.8 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB TFX_C PF14601.1 gi|336253212|ref|YP_004596319.1| - 8e-32 108.8 0.0 1.1e-31 108.4 0.0 1.2 1 0 0 1 1 1 1 DNA_binding protein, TFX, C-term Sigma70_r4 PF04545.11 gi|336253212|ref|YP_004596319.1| - 1.2e-06 27.6 0.2 2.5e-06 26.6 0.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_31 PF13560.1 gi|336253212|ref|YP_004596319.1| - 3.3e-05 23.9 2.6 6.6e-05 23.0 1.8 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|336253212|ref|YP_004596319.1| - 0.00014 21.8 0.1 0.00074 19.5 0.0 2.2 3 0 0 3 3 3 1 Helix-turn-helix domain GerE PF00196.14 gi|336253212|ref|YP_004596319.1| - 0.00021 20.5 0.1 0.00029 20.1 0.1 1.2 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_3 PF01381.17 gi|336253212|ref|YP_004596319.1| - 0.00043 20.0 0.2 0.00087 19.0 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_23 PF13384.1 gi|336253212|ref|YP_004596319.1| - 0.0013 18.3 0.1 0.0025 17.4 0.1 1.5 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_r4_2 PF08281.7 gi|336253212|ref|YP_004596319.1| - 0.0026 17.2 0.1 0.0045 16.4 0.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_37 PF13744.1 gi|336253212|ref|YP_004596319.1| - 0.0037 17.0 0.1 0.007 16.1 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_7 PF02796.10 gi|336253212|ref|YP_004596319.1| - 0.0094 15.7 0.0 0.018 14.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase MarR_2 PF12802.2 gi|336253212|ref|YP_004596319.1| - 0.032 13.9 0.1 0.073 12.7 0.1 1.7 1 1 0 1 1 1 0 MarR family RepB PF07506.6 gi|336253212|ref|YP_004596319.1| - 0.059 13.2 0.1 0.088 12.6 0.0 1.2 1 0 0 1 1 1 0 RepB plasmid partitioning protein HTH_Crp_2 PF13545.1 gi|336253212|ref|YP_004596319.1| - 0.064 13.0 0.1 0.12 12.1 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_38 PF13936.1 gi|336253212|ref|YP_004596319.1| - 0.066 12.7 0.1 0.12 11.9 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain KorB PF08535.5 gi|336253212|ref|YP_004596319.1| - 0.075 13.1 0.1 0.57 10.3 0.0 2.2 2 0 0 2 2 2 0 KorB domain Glycos_trans_3N PF02885.12 gi|336253212|ref|YP_004596319.1| - 0.19 11.3 1.1 5.6 6.6 0.3 2.3 1 1 1 2 2 2 0 Glycosyl transferase family, helical bundle domain TRAM PF01938.15 gi|336253213|ref|YP_004596320.1| - 1.6e-08 34.1 0.0 2.4e-08 33.6 0.0 1.3 1 0 0 1 1 1 1 TRAM domain Antimicrobial21 PF14861.1 gi|336253213|ref|YP_004596320.1| - 0.05 13.0 2.8 0.11 11.9 0.4 2.4 1 1 1 2 2 2 0 Plant antimicrobial peptide Sigma70_ner PF04546.8 gi|336253213|ref|YP_004596320.1| - 0.35 10.4 3.8 0.4 10.2 2.6 1.1 1 0 0 1 1 1 0 Sigma-70, non-essential region LZ_Tnp_IS66 PF13007.2 gi|336253213|ref|YP_004596320.1| - 0.61 10.7 5.0 0.96 10.1 3.5 1.3 1 0 0 1 1 1 0 Transposase C of IS166 homeodomain CDC45 PF02724.9 gi|336253213|ref|YP_004596320.1| - 0.67 7.9 4.1 0.76 7.7 2.9 1.0 1 0 0 1 1 1 0 CDC45-like protein Nop14 PF04147.7 gi|336253213|ref|YP_004596320.1| - 4 5.2 7.4 4.1 5.2 5.1 1.0 1 0 0 1 1 1 0 Nop14-like family ETF PF01012.16 gi|336253214|ref|YP_004596321.1| - 5.5e-36 123.7 2.2 5.5e-36 123.7 1.5 1.5 2 0 0 2 2 2 1 Electron transfer flavoprotein domain ETF_alpha PF00766.14 gi|336253215|ref|YP_004596322.1| - 9.6e-37 124.4 0.1 1.7e-36 123.7 0.0 1.4 1 0 0 1 1 1 1 Electron transfer flavoprotein FAD-binding domain ETF PF01012.16 gi|336253215|ref|YP_004596322.1| - 1.6e-32 112.4 1.1 2.9e-32 111.6 0.7 1.4 1 0 0 1 1 1 1 Electron transfer flavoprotein domain MCPsignal PF00015.16 gi|336253216|ref|YP_004596323.1| - 7.8e-40 136.6 68.2 7.2e-39 133.5 25.2 3.8 1 1 2 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.20 gi|336253216|ref|YP_004596323.1| - 3.9e-11 42.9 16.3 5.3e-10 39.3 0.0 5.0 5 0 0 5 5 5 2 HAMP domain Laminin_II PF06009.7 gi|336253216|ref|YP_004596323.1| - 0.0069 16.1 45.4 0.21 11.3 3.6 5.9 3 2 2 5 5 5 3 Laminin Domain II DUF948 PF06103.6 gi|336253216|ref|YP_004596323.1| - 0.021 14.6 29.7 0.28 11.0 1.4 6.2 3 2 3 6 6 6 0 Bacterial protein of unknown function (DUF948) GAS PF13851.1 gi|336253216|ref|YP_004596323.1| - 0.18 10.9 28.4 0.017 14.3 0.6 4.1 2 1 1 4 4 4 0 Growth-arrest specific micro-tubule binding GM_CSF PF01109.12 gi|336253216|ref|YP_004596323.1| - 0.28 11.1 1.1 1.1 9.2 0.8 2.0 1 0 0 1 1 1 0 Granulocyte-macrophage colony-stimulating factor TMP_2 PF06791.8 gi|336253216|ref|YP_004596323.1| - 0.62 9.6 35.0 2.8 7.5 8.5 3.5 2 2 0 2 2 2 0 Prophage tail length tape measure protein Seryl_tRNA_N PF02403.17 gi|336253216|ref|YP_004596323.1| - 2.9 7.9 40.1 1.7 8.6 1.1 5.8 2 2 3 5 5 5 0 Seryl-tRNA synthetase N-terminal domain NPV_P10 PF05531.7 gi|336253216|ref|YP_004596323.1| - 6.2 7.1 27.1 1.3 9.3 1.0 6.2 2 2 4 6 6 6 0 Nucleopolyhedrovirus P10 protein polyprenyl_synt PF00348.12 gi|336253217|ref|YP_004596324.1| - 2.5e-53 180.6 0.0 3.5e-53 180.1 0.0 1.2 1 0 0 1 1 1 1 Polyprenyl synthetase DUF373 PF04123.8 gi|336253218|ref|YP_004596325.1| - 1e-111 373.2 6.7 1.3e-111 372.9 4.7 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) Radical_SAM PF04055.16 gi|336253220|ref|YP_004596327.1| - 5e-06 26.7 3.0 0.00051 20.2 0.2 2.9 2 1 0 2 2 2 2 Radical SAM superfamily Fer4_14 PF13394.1 gi|336253220|ref|YP_004596327.1| - 2.5e-05 24.2 0.3 4.6e-05 23.4 0.2 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|336253220|ref|YP_004596327.1| - 0.00014 22.0 0.1 0.00028 21.0 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain PPR_3 PF13812.1 gi|336253220|ref|YP_004596327.1| - 0.069 13.4 0.1 0.35 11.2 0.0 2.2 2 0 0 2 2 2 0 Pentatricopeptide repeat domain HypA PF01155.14 gi|336253221|ref|YP_004596328.1| - 0.012 15.3 0.5 0.015 14.9 0.3 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DZR PF12773.2 gi|336253221|ref|YP_004596328.1| - 0.021 14.6 0.5 0.028 14.2 0.4 1.2 1 0 0 1 1 1 0 Double zinc ribbon ArfGap PF01412.13 gi|336253221|ref|YP_004596328.1| - 0.025 14.3 0.1 0.03 14.1 0.1 1.1 1 0 0 1 1 1 0 Putative GTPase activating protein for Arf Nudix_N_2 PF14803.1 gi|336253221|ref|YP_004596328.1| - 0.036 13.7 1.1 0.61 9.8 0.1 2.3 2 0 0 2 2 2 0 Nudix N-terminal zf-PHD-like PF15446.1 gi|336253221|ref|YP_004596328.1| - 0.074 12.3 0.2 0.083 12.1 0.1 1.0 1 0 0 1 1 1 0 PHD/FYVE-zinc-finger like domain TF_Zn_Ribbon PF08271.7 gi|336253221|ref|YP_004596328.1| - 0.23 10.7 7.1 2.6 7.4 0.3 2.9 1 1 2 3 3 3 0 TFIIB zinc-binding DUF1610 PF07754.6 gi|336253221|ref|YP_004596328.1| - 0.41 10.8 4.3 1.7 8.8 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Sgf11 PF08209.6 gi|336253221|ref|YP_004596328.1| - 1.2 8.5 5.1 2.2 7.6 0.1 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) HTH_IclR PF09339.5 gi|336253222|ref|YP_004596329.1| - 0.071 12.7 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|336253222|ref|YP_004596329.1| - 0.1 11.9 0.0 0.22 10.9 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF3489 PF11994.3 gi|336253222|ref|YP_004596329.1| - 0.11 12.4 0.0 0.23 11.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3489) MDMPI_N PF11716.3 gi|336253223|ref|YP_004596330.1| - 0.055 13.9 0.8 0.12 12.7 0.6 1.6 1 0 0 1 1 1 0 Mycothiol maleylpyruvate isomerase N-terminal domain PEGA PF08308.6 gi|336253223|ref|YP_004596330.1| - 2 8.2 5.2 1.4 8.7 0.2 3.0 3 2 0 3 3 3 0 PEGA domain DUF1628 PF07790.6 gi|336253224|ref|YP_004596331.1| - 1.1e-09 38.8 2.7 1.7e-09 38.3 1.9 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1628) Methyltransf_11 PF08241.7 gi|336253225|ref|YP_004596332.1| - 1.4e-24 86.4 0.0 2.1e-24 85.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|336253225|ref|YP_004596332.1| - 4.6e-19 68.6 0.0 6e-19 68.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|336253225|ref|YP_004596332.1| - 5.1e-19 68.3 0.0 2.3e-14 53.1 0.0 2.1 1 1 1 2 2 2 2 ubiE/COQ5 methyltransferase family Methyltransf_31 PF13847.1 gi|336253225|ref|YP_004596332.1| - 6.2e-19 68.0 0.0 7.6e-19 67.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|336253225|ref|YP_004596332.1| - 1.1e-17 64.2 0.0 1.7e-17 63.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|336253225|ref|YP_004596332.1| - 1.4e-15 57.5 0.0 2e-15 57.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|336253225|ref|YP_004596332.1| - 1.1e-13 51.7 0.0 1.6e-13 51.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|336253225|ref|YP_004596332.1| - 3.8e-11 43.0 0.1 2.2e-10 40.5 0.1 2.0 1 1 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|336253225|ref|YP_004596332.1| - 5.7e-07 29.2 0.0 7.2e-07 28.9 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.9 gi|336253225|ref|YP_004596332.1| - 9e-06 25.1 0.0 3.9e-05 23.1 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase small domain RrnaAD PF00398.15 gi|336253225|ref|YP_004596332.1| - 1.4e-05 24.2 0.0 1.6e-05 24.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_9 PF08003.6 gi|336253225|ref|YP_004596332.1| - 2.5e-05 23.1 0.0 3.3e-05 22.7 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_29 PF03141.11 gi|336253225|ref|YP_004596332.1| - 4.8e-05 21.8 0.0 6.2e-05 21.5 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase MetW PF07021.7 gi|336253225|ref|YP_004596332.1| - 0.00026 20.4 0.0 0.00034 20.0 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW CMAS PF02353.15 gi|336253225|ref|YP_004596332.1| - 0.0032 16.5 0.0 0.0047 16.0 0.0 1.4 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase DREV PF05219.7 gi|336253225|ref|YP_004596332.1| - 0.0034 16.2 0.0 0.0053 15.6 0.0 1.4 1 1 0 1 1 1 1 DREV methyltransferase Methyltransf_PK PF05891.7 gi|336253225|ref|YP_004596332.1| - 0.052 12.8 0.0 0.063 12.5 0.0 1.1 1 0 0 1 1 1 0 AdoMet dependent proline di-methyltransferase Methyltransf_8 PF05148.10 gi|336253225|ref|YP_004596332.1| - 0.061 12.9 0.0 0.36 10.4 0.0 1.9 1 1 0 1 1 1 0 Hypothetical methyltransferase Methyltransf_32 PF13679.1 gi|336253225|ref|YP_004596332.1| - 0.063 12.9 0.0 0.088 12.4 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain NodS PF05401.6 gi|336253225|ref|YP_004596332.1| - 0.067 12.5 0.0 0.088 12.1 0.0 1.1 1 0 0 1 1 1 0 Nodulation protein S (NodS) FtsJ PF01728.14 gi|336253225|ref|YP_004596332.1| - 0.083 12.8 0.0 0.14 12.1 0.0 1.5 2 0 0 2 2 2 0 FtsJ-like methyltransferase ATP-synt_B PF00430.13 gi|336253226|ref|YP_004596333.1| - 8.9e-07 28.7 17.7 1.2e-06 28.4 12.3 1.2 1 0 0 1 1 1 1 ATP synthase B/B' CF(0) V-ATPase_G PF03179.10 gi|336253226|ref|YP_004596333.1| - 0.00027 21.1 20.0 0.0056 16.9 4.7 2.1 1 1 1 2 2 2 2 Vacuolar (H+)-ATPase G subunit vATP-synt_E PF01991.13 gi|336253226|ref|YP_004596333.1| - 0.00071 18.9 12.7 0.00071 18.9 8.8 2.2 1 1 1 2 2 2 1 ATP synthase (E/31 kDa) subunit HrpE PF06188.7 gi|336253226|ref|YP_004596333.1| - 0.00097 18.9 15.1 0.0015 18.3 8.9 1.8 1 1 1 2 2 2 1 HrpE/YscL/FliH and V-type ATPase subunit E DUF883 PF05957.8 gi|336253226|ref|YP_004596333.1| - 0.0061 16.9 17.9 0.47 10.8 4.9 2.1 1 1 1 2 2 2 2 Bacterial protein of unknown function (DUF883) DUF3552 PF12072.3 gi|336253226|ref|YP_004596333.1| - 0.014 14.5 26.2 0.093 11.9 13.2 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF3552) DivIVA PF05103.8 gi|336253226|ref|YP_004596333.1| - 0.021 14.8 15.3 0.16 11.9 5.6 2.0 1 1 1 2 2 2 0 DivIVA protein ApoLp-III PF07464.6 gi|336253226|ref|YP_004596333.1| - 0.11 12.5 11.0 0.13 12.2 7.6 1.0 1 0 0 1 1 1 0 Apolipophorin-III precursor (apoLp-III) Apolipoprotein PF01442.13 gi|336253226|ref|YP_004596333.1| - 0.13 11.7 17.4 0.64 9.4 12.0 1.8 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain LUC7 PF03194.10 gi|336253226|ref|YP_004596333.1| - 0.15 11.5 14.3 0.17 11.4 9.9 1.0 1 0 0 1 1 1 0 LUC7 N_terminus DUF3435 PF11917.3 gi|336253226|ref|YP_004596333.1| - 0.19 10.4 8.6 0.22 10.2 6.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3435) Remorin_C PF03763.8 gi|336253226|ref|YP_004596333.1| - 0.19 11.2 15.1 0.052 13.0 3.4 2.2 1 1 1 2 2 2 0 Remorin, C-terminal region Caudo_TAP PF02413.12 gi|336253226|ref|YP_004596333.1| - 0.4 10.8 13.8 1.3 9.1 7.0 2.5 1 1 2 3 3 3 0 Caudovirales tail fibre assembly protein Inositol_P PF00459.20 gi|336253226|ref|YP_004596333.1| - 0.41 9.9 5.0 0.45 9.7 3.4 1.1 1 0 0 1 1 1 0 Inositol monophosphatase family GBP_C PF02841.9 gi|336253226|ref|YP_004596333.1| - 0.59 9.2 13.4 0.65 9.1 9.3 1.0 1 0 0 1 1 1 0 Guanylate-binding protein, C-terminal domain DUF4407 PF14362.1 gi|336253226|ref|YP_004596333.1| - 0.77 8.6 10.8 0.82 8.5 7.5 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) Peptidase_M41 PF01434.13 gi|336253226|ref|YP_004596333.1| - 1.1 8.7 7.6 1.1 8.6 0.5 2.0 1 1 1 2 2 2 0 Peptidase family M41 DUF1682 PF07946.9 gi|336253226|ref|YP_004596333.1| - 1.1 8.0 16.9 1.3 7.8 11.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1682) Borrelia_P83 PF05262.6 gi|336253226|ref|YP_004596333.1| - 1.4 7.1 12.7 1.5 6.9 8.8 1.0 1 0 0 1 1 1 0 Borrelia P83/100 protein Mnd1 PF03962.10 gi|336253226|ref|YP_004596333.1| - 2.5 7.7 10.7 3.4 7.2 7.4 1.2 1 0 0 1 1 1 0 Mnd1 family Bravo_FIGEY PF13882.1 gi|336253226|ref|YP_004596333.1| - 3.8 8.4 6.7 1.1 10.2 1.8 1.8 1 1 1 2 2 2 0 Bravo-like intracellular region APG6 PF04111.7 gi|336253226|ref|YP_004596333.1| - 5 6.0 12.1 5.4 5.9 8.4 1.1 1 0 0 1 1 1 0 Autophagy protein Apg6 RRN3 PF05327.6 gi|336253226|ref|YP_004596333.1| - 5 5.1 8.8 5.9 4.8 6.1 1.0 1 0 0 1 1 1 0 RNA polymerase I specific transcription initiation factor RRN3 Dzip-like_N PF13815.1 gi|336253226|ref|YP_004596333.1| - 5.1 6.9 9.4 1.1 9.0 3.2 2.0 1 1 1 2 2 2 0 Iguana/Dzip1-like DAZ-interacting protein N-terminal DUF874 PF05917.6 gi|336253226|ref|YP_004596333.1| - 5.8 5.6 11.2 6.2 5.5 7.7 1.1 1 0 0 1 1 1 0 Helicobacter pylori protein of unknown function (DUF874) HSP70 PF00012.15 gi|336253226|ref|YP_004596333.1| - 6.2 4.5 11.7 7.4 4.3 8.1 1.0 1 0 0 1 1 1 0 Hsp70 protein HAUS6_N PF14661.1 gi|336253226|ref|YP_004596333.1| - 7 5.9 9.5 8.3 5.6 6.6 1.1 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 6 N-terminus 5_nucleotid PF05761.9 gi|336253226|ref|YP_004596333.1| - 8.8 4.7 6.8 9.8 4.5 4.7 1.1 1 0 0 1 1 1 0 5' nucleotidase family YtxH PF12732.2 gi|336253226|ref|YP_004596333.1| - 8.9 6.7 11.6 2.9e+02 1.9 8.0 2.4 1 1 0 1 1 1 0 YtxH-like protein Mitofilin PF09731.4 gi|336253226|ref|YP_004596333.1| - 9.6 4.7 19.6 11 4.4 13.6 1.0 1 0 0 1 1 1 0 Mitochondrial inner membrane protein V_ATPase_I PF01496.14 gi|336253227|ref|YP_004596334.1| - 9.2e-68 228.8 27.6 6.4e-29 100.3 9.2 5.9 4 1 1 5 5 5 5 V-type ATPase 116kDa subunit family Tektin PF03148.9 gi|336253227|ref|YP_004596334.1| - 9.8e-05 21.0 0.4 0.0042 15.6 0.0 2.0 2 0 0 2 2 2 1 Tektin family Prefoldin_2 PF01920.15 gi|336253227|ref|YP_004596334.1| - 0.00066 19.4 1.3 0.091 12.5 0.1 2.3 2 0 0 2 2 2 1 Prefoldin subunit FlaC_arch PF05377.6 gi|336253227|ref|YP_004596334.1| - 0.0039 17.0 0.9 0.34 10.8 0.1 2.8 2 0 0 2 2 2 1 Flagella accessory protein C (FlaC) Apolipoprotein PF01442.13 gi|336253227|ref|YP_004596334.1| - 0.014 14.8 1.2 0.066 12.7 0.1 1.9 2 0 0 2 2 2 0 Apolipoprotein A1/A4/E domain DUF4140 PF13600.1 gi|336253227|ref|YP_004596334.1| - 0.039 14.4 6.3 4.7 7.7 2.1 2.5 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) CENP-F_leu_zip PF10473.4 gi|336253227|ref|YP_004596334.1| - 0.043 13.6 4.1 1.5 8.6 0.2 2.3 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 EMP24_GP25L PF01105.19 gi|336253227|ref|YP_004596334.1| - 0.1 12.3 0.4 0.81 9.3 0.0 2.1 2 0 0 2 2 2 0 emp24/gp25L/p24 family/GOLD MscS_porin PF12795.2 gi|336253227|ref|YP_004596334.1| - 0.3 10.3 2.9 0.68 9.2 0.3 2.1 2 0 0 2 2 2 0 Mechanosensitive ion channel porin domain PilJ PF13675.1 gi|336253227|ref|YP_004596334.1| - 0.33 11.2 1.7 2 8.7 0.1 2.4 2 0 0 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term DUF2968 PF11180.3 gi|336253227|ref|YP_004596334.1| - 0.81 9.0 2.9 0.34 10.2 0.4 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2968) Filament PF00038.16 gi|336253227|ref|YP_004596334.1| - 0.81 9.0 4.8 3.4 7.0 3.4 1.8 1 1 0 1 1 1 0 Intermediate filament protein APG6 PF04111.7 gi|336253227|ref|YP_004596334.1| - 1 8.3 1.8 9.6 5.1 0.0 2.1 2 0 0 2 2 2 0 Autophagy protein Apg6 Spc24 PF08286.6 gi|336253227|ref|YP_004596334.1| - 2.5 7.8 5.7 3.7 7.2 0.1 2.8 3 0 0 3 3 3 0 Spc24 subunit of Ndc80 ATP-synt_C PF00137.16 gi|336253228|ref|YP_004596335.1| - 3.5e-14 52.4 8.6 5.4e-14 51.8 6.0 1.2 1 0 0 1 1 1 1 ATP synthase subunit C vATP-synt_E PF01991.13 gi|336253229|ref|YP_004596336.1| - 1.3e-41 142.0 9.4 1.7e-41 141.6 6.5 1.1 1 0 0 1 1 1 1 ATP synthase (E/31 kDa) subunit DinI PF06183.8 gi|336253229|ref|YP_004596336.1| - 0.035 14.1 1.6 4 7.5 0.0 3.0 3 1 0 3 3 3 0 DinI-like family ISG65-75 PF11727.3 gi|336253229|ref|YP_004596336.1| - 0.077 12.0 4.9 0.092 11.7 3.4 1.3 1 0 0 1 1 1 0 Invariant surface glycoprotein Peptidase_C58 PF03543.9 gi|336253229|ref|YP_004596336.1| - 0.13 11.6 1.7 0.19 11.1 1.2 1.3 1 0 0 1 1 1 0 Yersinia/Haemophilus virulence surface antigen HAUS5 PF14817.1 gi|336253229|ref|YP_004596336.1| - 0.35 9.3 11.2 0.43 9.0 7.8 1.1 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 5 YlqD PF11068.3 gi|336253229|ref|YP_004596336.1| - 0.36 10.8 6.4 0.45 10.5 3.9 1.5 1 1 0 1 1 1 0 YlqD protein OmpH PF03938.9 gi|336253229|ref|YP_004596336.1| - 0.37 10.7 9.5 0.58 10.0 6.6 1.3 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) GAS PF13851.1 gi|336253229|ref|YP_004596336.1| - 0.55 9.4 10.1 0.83 8.8 7.0 1.2 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding V-ATPase_G PF03179.10 gi|336253229|ref|YP_004596336.1| - 1.3 9.3 14.0 0.78 10.0 8.3 1.7 1 1 0 1 1 1 0 Vacuolar (H+)-ATPase G subunit ATP-synt_B PF00430.13 gi|336253229|ref|YP_004596336.1| - 1.7 8.4 19.5 0.98 9.2 7.5 2.2 1 1 1 2 2 2 0 ATP synthase B/B' CF(0) HSP70 PF00012.15 gi|336253229|ref|YP_004596336.1| - 1.9 6.2 7.0 2.2 6.0 4.9 1.1 1 0 0 1 1 1 0 Hsp70 protein Mt_ATP-synt_B PF05405.9 gi|336253229|ref|YP_004596336.1| - 2.9 7.3 6.2 6.6 6.1 2.9 1.6 1 1 1 2 2 2 0 Mitochondrial ATP synthase B chain precursor (ATP-synt_B) HrpE PF06188.7 gi|336253229|ref|YP_004596336.1| - 3.4 7.3 11.2 6.1 6.5 7.7 1.5 1 1 0 1 1 1 0 HrpE/YscL/FliH and V-type ATPase subunit E Phasin PF05597.6 gi|336253229|ref|YP_004596336.1| - 3.6 7.3 12.0 1.2 8.8 4.4 2.5 2 1 1 3 3 3 0 Poly(hydroxyalcanoate) granule associated protein (phasin) DUF883 PF05957.8 gi|336253229|ref|YP_004596336.1| - 4.1 7.8 15.9 4.3 7.8 3.0 2.9 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) DUF4407 PF14362.1 gi|336253229|ref|YP_004596336.1| - 5.1 5.9 10.9 6.4 5.6 7.6 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) DivIVA PF05103.8 gi|336253229|ref|YP_004596336.1| - 5.8 6.9 12.5 1.9 8.5 5.8 2.0 1 1 1 2 2 2 0 DivIVA protein vATP-synt_AC39 PF01992.11 gi|336253230|ref|YP_004596337.1| - 1.2e-95 320.4 4.5 1.4e-95 320.3 3.1 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit DUF3209 PF11483.3 gi|336253230|ref|YP_004596337.1| - 0.025 14.9 1.0 0.062 13.6 0.1 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF3209) DUF2981 PF11200.3 gi|336253230|ref|YP_004596337.1| - 0.11 11.5 0.4 0.4 9.7 0.7 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2981) ATP-synt_F PF01990.12 gi|336253231|ref|YP_004596338.1| - 9.5e-19 67.5 0.1 1.1e-18 67.3 0.0 1.1 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit ATP-synt_ab PF00006.20 gi|336253232|ref|YP_004596339.1| - 1.8e-94 315.2 0.0 2.5e-94 314.7 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|336253232|ref|YP_004596339.1| - 7.1e-17 61.9 0.5 1.2e-16 61.1 0.3 1.4 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|336253232|ref|YP_004596339.1| - 6.6e-12 45.4 4.0 6.6e-12 45.4 2.7 2.4 2 0 0 2 2 2 1 ATP synthase alpha/beta family, beta-barrel domain AAA_22 PF13401.1 gi|336253232|ref|YP_004596339.1| - 0.056 13.5 0.0 0.17 12.0 0.0 1.8 1 0 0 1 1 1 0 AAA domain Peptidase_M23 PF01551.17 gi|336253232|ref|YP_004596339.1| - 0.096 12.7 0.1 9.5 6.3 0.0 2.5 2 0 0 2 2 2 0 Peptidase family M23 ATP-synt_ab PF00006.20 gi|336253233|ref|YP_004596340.1| - 5.7e-60 202.4 0.0 8.1e-60 201.9 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|336253233|ref|YP_004596340.1| - 1.2e-18 67.6 0.3 2.5e-18 66.6 0.2 1.5 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|336253233|ref|YP_004596340.1| - 3.6e-13 49.5 1.3 9.9e-13 48.1 0.9 1.8 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.5 gi|336253233|ref|YP_004596340.1| - 0.00027 20.7 0.6 0.00072 19.4 0.4 1.8 1 0 0 1 1 1 1 HAS barrel domain DUF2082 PF09855.4 gi|336253235|ref|YP_004596342.1| - 2.3e-28 97.7 0.2 2.6e-28 97.6 0.2 1.0 1 0 0 1 1 1 1 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Lar_restr_allev PF14354.1 gi|336253235|ref|YP_004596342.1| - 4.3e-05 23.7 0.3 5.8e-05 23.3 0.2 1.2 1 0 0 1 1 1 1 Restriction alleviation protein Lar zf-ribbon_3 PF13248.1 gi|336253235|ref|YP_004596342.1| - 7.6e-05 21.7 1.2 0.22 10.7 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|336253235|ref|YP_004596342.1| - 0.0013 18.0 0.4 0.27 10.6 0.1 2.2 2 0 0 2 2 2 1 TFIIB zinc-binding zinc_ribbon_2 PF13240.1 gi|336253235|ref|YP_004596342.1| - 0.0017 17.7 2.2 0.45 10.0 0.2 2.2 2 0 0 2 2 2 2 zinc-ribbon domain DUF2387 PF09526.5 gi|336253235|ref|YP_004596342.1| - 0.0037 17.1 2.2 0.16 11.9 1.2 2.1 1 1 0 1 1 1 1 Probable metal-binding protein (DUF2387) A2L_zn_ribbon PF08792.5 gi|336253235|ref|YP_004596342.1| - 0.0039 16.6 0.9 0.66 9.4 0.0 2.3 2 0 0 2 2 2 1 A2L zinc ribbon domain TFIIS_C PF01096.13 gi|336253235|ref|YP_004596342.1| - 0.0045 16.5 1.5 0.63 9.7 0.1 2.3 2 0 0 2 2 2 1 Transcription factor S-II (TFIIS) Zn_Tnp_IS1595 PF12760.2 gi|336253235|ref|YP_004596342.1| - 0.0061 16.3 3.2 0.77 9.6 0.3 2.1 1 1 1 2 2 2 2 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|336253235|ref|YP_004596342.1| - 0.011 15.6 0.5 0.6 10.0 0.1 2.2 2 0 0 2 2 2 0 Zinc ribbon domain zf-ISL3 PF14690.1 gi|336253235|ref|YP_004596342.1| - 0.035 14.1 0.1 3.1 7.8 0.0 2.1 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Ribosomal_S27e PF01667.12 gi|336253235|ref|YP_004596342.1| - 0.041 13.4 1.0 3 7.4 0.0 2.1 2 0 0 2 2 2 0 Ribosomal protein S27 DZR PF12773.2 gi|336253235|ref|YP_004596342.1| - 0.046 13.5 2.0 0.14 11.9 1.4 1.7 1 1 0 1 1 1 0 Double zinc ribbon CpXC PF14353.1 gi|336253235|ref|YP_004596342.1| - 0.048 13.6 0.5 0.068 13.1 0.4 1.3 1 1 0 1 1 1 0 CpXC protein Elf1 PF05129.8 gi|336253235|ref|YP_004596342.1| - 0.066 12.9 0.3 0.14 11.8 0.2 1.5 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like GcpE PF04551.9 gi|336253235|ref|YP_004596342.1| - 0.079 11.7 0.4 0.35 9.6 0.1 1.8 1 1 1 2 2 2 0 GcpE protein zf-C4_Topoisom PF01396.14 gi|336253235|ref|YP_004596342.1| - 0.11 12.0 2.5 8.2 6.0 0.6 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger DUF35_N PF12172.3 gi|336253235|ref|YP_004596342.1| - 0.13 12.2 0.4 11 6.0 0.0 2.1 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DNA_RNApol_7kD PF03604.8 gi|336253235|ref|YP_004596342.1| - 0.13 11.7 2.7 1.1 8.7 0.1 2.2 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit RNA_POL_M_15KD PF02150.11 gi|336253235|ref|YP_004596342.1| - 0.15 11.7 1.2 5.8 6.6 0.0 2.3 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit Zn_Tnp_IS91 PF14319.1 gi|336253235|ref|YP_004596342.1| - 0.17 11.4 1.9 3.1 7.3 0.1 2.0 1 1 0 2 2 2 0 Transposase zinc-binding domain zf-ZPR1 PF03367.8 gi|336253235|ref|YP_004596342.1| - 0.17 11.0 2.0 3.4 6.7 0.0 2.0 1 1 0 1 1 1 0 ZPR1 zinc-finger domain zinc_ribbon_4 PF13717.1 gi|336253235|ref|YP_004596342.1| - 0.22 11.2 4.7 5.8 6.7 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.4 gi|336253235|ref|YP_004596342.1| - 0.22 11.2 3.7 2.4 7.9 0.4 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-HYPF PF07503.7 gi|336253235|ref|YP_004596342.1| - 0.23 10.9 0.4 0.23 10.9 0.3 2.5 2 1 0 2 2 2 0 HypF finger zf-IS66 PF13005.2 gi|336253235|ref|YP_004596342.1| - 0.3 11.1 3.9 2.1 8.3 2.8 2.0 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 DUF2225 PF09986.4 gi|336253235|ref|YP_004596342.1| - 0.3 10.5 1.1 0.95 8.8 0.7 1.8 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2225) OrfB_Zn_ribbon PF07282.6 gi|336253235|ref|YP_004596342.1| - 0.39 10.3 2.6 4.4 7.0 1.8 2.0 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zinc_ribbon_5 PF13719.1 gi|336253235|ref|YP_004596342.1| - 0.76 9.4 6.7 6.1 6.5 0.1 2.6 3 0 0 3 3 3 0 zinc-ribbon domain NOB1_Zn_bind PF08772.6 gi|336253235|ref|YP_004596342.1| - 0.77 9.6 2.7 9.5 6.1 0.4 2.1 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-tcix PF14952.1 gi|336253235|ref|YP_004596342.1| - 2.9 7.3 4.9 9.8 5.6 1.0 2.1 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding ATP-synt_D PF01813.12 gi|336253236|ref|YP_004596343.1| - 1.5e-59 200.8 9.5 1.5e-59 200.8 6.6 1.5 2 0 0 2 2 2 1 ATP synthase subunit D Peptidase_S49_N PF08496.5 gi|336253236|ref|YP_004596343.1| - 2.1 8.1 8.1 4.2 7.1 5.4 1.7 2 0 0 2 2 2 0 Peptidase family S49 N-terminal zf-ribbon_3 PF13248.1 gi|336253237|ref|YP_004596344.1| - 0.027 13.6 1.5 0.076 12.2 1.0 1.7 1 1 0 1 1 1 0 zinc-ribbon domain DZR PF12773.2 gi|336253237|ref|YP_004596344.1| - 0.077 12.8 1.2 0.16 11.8 0.9 1.5 1 1 0 1 1 1 0 Double zinc ribbon zf-TFIIB PF13453.1 gi|336253237|ref|YP_004596344.1| - 0.14 11.3 1.3 4.3 6.6 0.1 2.3 2 0 0 2 2 2 0 Transcription factor zinc-finger zf-RING_3 PF14369.1 gi|336253237|ref|YP_004596344.1| - 0.98 9.4 3.2 11 6.1 0.2 2.4 2 0 0 2 2 2 0 zinc-finger PvlArgDC PF01862.11 gi|336253239|ref|YP_004596346.1| - 1.2e-27 96.5 0.0 1.3e-27 96.4 0.0 1.0 1 0 0 1 1 1 1 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) AAA PF00004.24 gi|336253240|ref|YP_004596347.1| - 3.7e-45 153.3 1.2 7.3e-45 152.4 0.1 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_2 PF07724.9 gi|336253240|ref|YP_004596347.1| - 1.5e-08 34.7 0.0 4.2e-08 33.2 0.0 1.8 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.7 gi|336253240|ref|YP_004596347.1| - 1.3e-06 27.6 0.0 4.2e-06 25.9 0.0 1.8 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|336253240|ref|YP_004596347.1| - 1.8e-06 28.0 0.9 0.0001 22.3 0.1 3.0 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|336253240|ref|YP_004596347.1| - 2.4e-06 27.7 2.8 6.8e-05 23.0 0.2 3.0 2 1 0 2 2 2 1 AAA domain AAA_5 PF07728.9 gi|336253240|ref|YP_004596347.1| - 2.7e-06 27.1 3.4 3.7e-06 26.6 0.2 2.7 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_17 PF13207.1 gi|336253240|ref|YP_004596347.1| - 1.6e-05 25.6 2.7 4.2e-05 24.3 0.1 2.6 2 1 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|336253240|ref|YP_004596347.1| - 6.4e-05 23.2 1.0 0.0092 16.2 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|336253240|ref|YP_004596347.1| - 0.00014 21.7 0.0 0.00033 20.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain DUF815 PF05673.8 gi|336253240|ref|YP_004596347.1| - 0.00019 20.4 0.1 0.00047 19.1 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF815) AAA_28 PF13521.1 gi|336253240|ref|YP_004596347.1| - 0.00096 19.1 1.5 0.0023 17.9 0.0 2.3 2 1 0 2 2 2 1 AAA domain TIP49 PF06068.8 gi|336253240|ref|YP_004596347.1| - 0.0013 17.5 0.0 0.0023 16.7 0.0 1.4 1 0 0 1 1 1 1 TIP49 C-terminus IstB_IS21 PF01695.12 gi|336253240|ref|YP_004596347.1| - 0.0014 18.1 0.0 0.0038 16.6 0.0 1.7 1 0 0 1 1 1 1 IstB-like ATP binding protein Mg_chelatase PF01078.16 gi|336253240|ref|YP_004596347.1| - 0.0014 17.8 0.0 0.0032 16.6 0.0 1.6 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI NACHT PF05729.7 gi|336253240|ref|YP_004596347.1| - 0.0014 18.2 0.9 0.048 13.3 0.0 2.7 3 0 0 3 3 2 1 NACHT domain AAA_19 PF13245.1 gi|336253240|ref|YP_004596347.1| - 0.0015 18.2 0.1 0.0043 16.7 0.1 1.7 1 0 0 1 1 1 1 Part of AAA domain AAA_33 PF13671.1 gi|336253240|ref|YP_004596347.1| - 0.0016 18.2 0.1 0.0056 16.5 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.1 gi|336253240|ref|YP_004596347.1| - 0.002 17.7 0.2 0.0051 16.4 0.0 1.9 2 0 0 2 2 1 1 AAA domain Zeta_toxin PF06414.7 gi|336253240|ref|YP_004596347.1| - 0.0031 16.6 0.1 0.011 14.8 0.0 2.0 2 0 0 2 2 2 1 Zeta toxin Sigma54_activat PF00158.21 gi|336253240|ref|YP_004596347.1| - 0.0033 16.8 0.1 0.07 12.5 0.0 2.4 2 1 0 2 2 2 1 Sigma-54 interaction domain AAA_25 PF13481.1 gi|336253240|ref|YP_004596347.1| - 0.0039 16.6 8.5 0.034 13.5 0.1 3.4 2 1 1 3 3 3 1 AAA domain Arch_ATPase PF01637.13 gi|336253240|ref|YP_004596347.1| - 0.0063 16.2 0.9 0.26 10.9 0.0 2.7 2 1 1 3 3 3 1 Archaeal ATPase RNA_helicase PF00910.17 gi|336253240|ref|YP_004596347.1| - 0.0078 16.3 0.0 0.016 15.3 0.0 1.5 1 0 0 1 1 1 1 RNA helicase NB-ARC PF00931.17 gi|336253240|ref|YP_004596347.1| - 0.008 15.0 0.0 0.021 13.7 0.0 1.9 1 1 0 1 1 1 1 NB-ARC domain Parvo_NS1 PF01057.12 gi|336253240|ref|YP_004596347.1| - 0.022 13.6 0.2 0.053 12.3 0.0 1.6 2 0 0 2 2 2 0 Parvovirus non-structural protein NS1 AAA_13 PF13166.1 gi|336253240|ref|YP_004596347.1| - 0.022 13.2 1.8 0.14 10.5 0.6 2.0 2 0 0 2 2 2 0 AAA domain Rootletin PF15035.1 gi|336253240|ref|YP_004596347.1| - 0.022 14.7 2.5 0.047 13.6 1.7 1.5 1 0 0 1 1 1 0 Ciliary rootlet component, centrosome cohesion AAA_23 PF13476.1 gi|336253240|ref|YP_004596347.1| - 0.026 14.8 1.4 3.6 7.8 0.0 2.5 2 0 0 2 2 2 0 AAA domain AAA_3 PF07726.6 gi|336253240|ref|YP_004596347.1| - 0.027 14.0 0.0 0.052 13.1 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) CENP-Q PF13094.1 gi|336253240|ref|YP_004596347.1| - 0.033 14.2 5.0 0.083 12.9 2.7 2.0 2 0 0 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit ABC_tran PF00005.22 gi|336253240|ref|YP_004596347.1| - 0.036 14.3 0.2 0.3 11.3 0.0 2.4 2 0 0 2 2 2 0 ABC transporter KaiC PF06745.8 gi|336253240|ref|YP_004596347.1| - 0.038 13.0 4.5 0.22 10.6 0.0 2.9 2 1 1 3 3 3 0 KaiC Sigma54_activ_2 PF14532.1 gi|336253240|ref|YP_004596347.1| - 0.038 14.0 0.0 0.11 12.5 0.0 1.8 1 1 0 1 1 1 0 Sigma-54 interaction domain DUF4201 PF13870.1 gi|336253240|ref|YP_004596347.1| - 0.042 13.2 2.5 0.073 12.5 1.7 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4201) AAA_11 PF13086.1 gi|336253240|ref|YP_004596347.1| - 0.066 12.7 0.1 0.47 9.9 0.0 2.1 2 0 0 2 2 2 0 AAA domain APG6 PF04111.7 gi|336253240|ref|YP_004596347.1| - 0.12 11.4 2.0 0.22 10.5 1.4 1.4 1 0 0 1 1 1 0 Autophagy protein Apg6 Med9 PF07544.8 gi|336253240|ref|YP_004596347.1| - 0.15 11.8 3.5 0.58 9.9 2.4 2.0 1 0 0 1 1 1 0 RNA polymerase II transcription mediator complex subunit 9 V_ATPase_I PF01496.14 gi|336253240|ref|YP_004596347.1| - 0.22 9.3 0.6 0.31 8.8 0.4 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family NTPase_1 PF03266.10 gi|336253240|ref|YP_004596347.1| - 0.27 10.9 0.1 0.27 10.9 0.0 2.9 3 1 1 4 4 4 0 NTPase IncA PF04156.9 gi|336253240|ref|YP_004596347.1| - 0.39 10.2 2.3 0.75 9.3 1.6 1.4 1 0 0 1 1 1 0 IncA protein Peptidase_M3 PF01432.15 gi|336253241|ref|YP_004596348.1| - 8.3e-68 229.4 4.1 8.3e-68 229.4 2.8 2.2 2 0 0 2 2 2 2 Peptidase family M3 Peptidase_M3_N PF08439.5 gi|336253241|ref|YP_004596348.1| - 1.8e-22 79.1 7.3 1.3e-21 76.3 0.2 3.2 3 0 0 3 3 3 1 Oligopeptidase F Reprolysin_3 PF13582.1 gi|336253241|ref|YP_004596348.1| - 0.12 12.8 0.6 0.62 10.6 0.0 2.3 2 0 0 2 2 2 0 Metallo-peptidase family M12B Reprolysin-like DASH_Dad2 PF08654.5 gi|336253241|ref|YP_004596348.1| - 0.15 12.0 2.9 0.65 10.0 0.4 2.9 3 0 0 3 3 3 0 DASH complex subunit Dad2 FUSC PF04632.7 gi|336253241|ref|YP_004596348.1| - 4.2 5.6 6.3 1.6 7.1 1.4 2.0 2 0 0 2 2 2 0 Fusaric acid resistance protein family Peptidase_M28 PF04389.12 gi|336253242|ref|YP_004596349.1| - 9.7e-29 100.3 0.0 1.5e-28 99.7 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M28 PA PF02225.17 gi|336253242|ref|YP_004596349.1| - 1.2e-07 31.3 0.1 2e-07 30.6 0.0 1.4 1 0 0 1 1 1 1 PA domain Peptidase_M20 PF01546.23 gi|336253242|ref|YP_004596349.1| - 2.1e-06 27.3 0.1 4e-06 26.4 0.1 1.4 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M42 PF05343.9 gi|336253242|ref|YP_004596349.1| - 0.014 14.1 0.2 0.026 13.3 0.2 1.3 1 0 0 1 1 1 0 M42 glutamyl aminopeptidase HTH_26 PF13443.1 gi|336253243|ref|YP_004596350.1| - 0.075 13.2 0.0 11 6.3 0.0 2.4 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain Nuc-transf PF10127.4 gi|336253244|ref|YP_004596351.1| - 3.1e-28 98.7 0.0 5e-28 98.1 0.0 1.4 1 1 0 1 1 1 1 Predicted nucleotidyltransferase ST7 PF04184.7 gi|336253244|ref|YP_004596351.1| - 0.029 12.6 0.0 0.039 12.2 0.0 1.1 1 0 0 1 1 1 0 ST7 protein NTP_transf_2 PF01909.18 gi|336253244|ref|YP_004596351.1| - 0.079 13.2 0.1 0.14 12.4 0.0 1.6 1 1 0 1 1 1 0 Nucleotidyltransferase domain Glutaredoxin PF00462.19 gi|336253245|ref|YP_004596352.1| - 3e-15 55.9 0.0 3.9e-15 55.5 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin GST_N_3 PF13417.1 gi|336253245|ref|YP_004596352.1| - 9.1e-14 51.4 0.0 9.9e-14 51.3 0.0 1.0 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_2 PF13409.1 gi|336253245|ref|YP_004596352.1| - 4.1e-10 39.4 0.0 4.6e-10 39.3 0.0 1.0 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain DUF836 PF05768.9 gi|336253245|ref|YP_004596352.1| - 0.00068 19.8 0.1 0.00077 19.6 0.1 1.3 1 1 0 1 1 1 1 Glutaredoxin-like domain (DUF836) NTP_transf_3 PF12804.2 gi|336253245|ref|YP_004596352.1| - 0.033 14.2 0.0 0.04 14.0 0.0 1.0 1 0 0 1 1 1 0 MobA-like NTP transferase domain Thioredoxin_2 PF13098.1 gi|336253245|ref|YP_004596352.1| - 0.14 12.3 0.0 0.16 12.2 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin-like domain HIT PF01230.18 gi|336253246|ref|YP_004596353.1| - 8.1e-13 48.7 0.0 1.4e-12 47.9 0.0 1.3 1 0 0 1 1 1 1 HIT domain CwfJ_C_1 PF04677.10 gi|336253246|ref|YP_004596353.1| - 1.4e-05 24.7 0.0 2.5e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 DcpS_C PF11969.3 gi|336253246|ref|YP_004596353.1| - 3.8e-05 23.8 0.0 6.2e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding NOB1_Zn_bind PF08772.6 gi|336253247|ref|YP_004596354.1| - 0.0037 17.0 1.5 0.61 9.9 0.0 2.1 1 1 1 2 2 2 2 Nin one binding (NOB1) Zn-ribbon like DAN PF03045.10 gi|336253247|ref|YP_004596354.1| - 0.048 13.0 0.6 0.052 12.9 0.4 1.1 1 0 0 1 1 1 0 DAN domain TFIIS_C PF01096.13 gi|336253247|ref|YP_004596354.1| - 0.074 12.6 0.4 13 5.5 0.2 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-DNL PF05180.7 gi|336253247|ref|YP_004596354.1| - 0.35 10.6 2.6 5.5 6.7 0.5 2.3 1 1 1 2 2 2 0 DNL zinc finger Peptidase_M24 PF00557.19 gi|336253248|ref|YP_004596355.1| - 2.7e-45 154.5 1.2 3.3e-45 154.1 0.8 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Asparaginase_2 PF01112.13 gi|336253249|ref|YP_004596356.1| - 2.5e-53 180.8 4.9 3.4e-53 180.4 3.4 1.1 1 0 0 1 1 1 1 Asparaginase EmrE PF13536.1 gi|336253250|ref|YP_004596357.1| - 0.0046 17.1 3.9 0.0057 16.8 2.7 1.1 1 0 0 1 1 1 1 Multidrug resistance efflux transporter DUF2613 PF11021.3 gi|336253250|ref|YP_004596357.1| - 0.1 12.3 7.9 3.7 7.3 0.0 2.8 3 0 0 3 3 3 0 Protein of unknown function (DUF2613) PRA1 PF03208.14 gi|336253250|ref|YP_004596357.1| - 0.13 11.5 3.6 0.15 11.3 2.5 1.1 1 0 0 1 1 1 0 PRA1 family protein DUF202 PF02656.10 gi|336253250|ref|YP_004596357.1| - 1.8 8.8 9.0 15 5.8 6.3 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF202) DUF4345 PF14248.1 gi|336253250|ref|YP_004596357.1| - 6.7 6.1 11.1 8.9 5.7 1.6 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF4345) Iso_dh PF00180.15 gi|336253251|ref|YP_004596358.1| - 1.2e-102 343.3 0.0 1.7e-102 342.9 0.0 1.1 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Acetyltransf_1 PF00583.19 gi|336253252|ref|YP_004596359.1| - 3.9e-15 55.6 1.1 5.7e-15 55.1 0.8 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|336253252|ref|YP_004596359.1| - 6.3e-12 45.6 0.2 7.8e-12 45.3 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|336253252|ref|YP_004596359.1| - 1.1e-10 41.5 0.1 1.7e-10 40.8 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|336253252|ref|YP_004596359.1| - 5.6e-09 35.9 0.3 6.5e-09 35.7 0.2 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_5 PF13444.1 gi|336253252|ref|YP_004596359.1| - 0.00092 19.7 1.7 0.0019 18.7 0.6 2.0 1 1 1 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|336253252|ref|YP_004596359.1| - 0.0042 16.9 0.2 0.006 16.4 0.1 1.5 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_4 PF13420.1 gi|336253252|ref|YP_004596359.1| - 0.02 14.8 0.0 0.035 14.0 0.0 1.5 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|336253252|ref|YP_004596359.1| - 0.033 13.9 0.1 0.065 12.9 0.0 1.5 1 0 0 1 1 1 0 FR47-like protein Nramp PF01566.13 gi|336253253|ref|YP_004596360.1| - 3.9e-59 200.2 30.6 3.9e-59 200.2 21.2 1.7 2 0 0 2 2 2 1 Natural resistance-associated macrophage protein Cupin_2 PF07883.6 gi|336253254|ref|YP_004596361.1| - 1e-17 63.3 1.1 1.3e-17 63.0 0.8 1.1 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|336253254|ref|YP_004596361.1| - 3.7e-05 23.4 0.7 5.1e-05 22.9 0.5 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_1 PF00190.17 gi|336253254|ref|YP_004596361.1| - 0.025 13.9 0.0 0.038 13.4 0.0 1.3 1 1 0 1 1 1 0 Cupin MannoseP_isomer PF01050.13 gi|336253254|ref|YP_004596361.1| - 0.064 12.8 0.0 0.081 12.5 0.0 1.1 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase Cupin_6 PF12852.2 gi|336253254|ref|YP_004596361.1| - 0.12 12.0 0.0 0.13 11.8 0.0 1.2 1 0 0 1 1 1 0 Cupin TerY-C PF15616.1 gi|336253255|ref|YP_004596362.1| - 0.024 14.5 0.4 0.036 13.9 0.3 1.3 1 0 0 1 1 1 0 TerY-C metal binding domain PaaX PF07848.7 gi|336253255|ref|YP_004596362.1| - 0.05 13.6 0.2 0.12 12.4 0.1 1.6 1 0 0 1 1 1 0 PaaX-like protein HypA PF01155.14 gi|336253255|ref|YP_004596362.1| - 0.05 13.2 0.9 0.096 12.3 0.5 1.6 2 0 0 2 2 2 0 Hydrogenase expression/synthesis hypA family Zn-ribbon_8 PF09723.5 gi|336253255|ref|YP_004596362.1| - 0.086 12.8 1.2 0.26 11.2 0.8 1.8 1 0 0 1 1 1 0 Zinc ribbon domain TFIIS_C PF01096.13 gi|336253255|ref|YP_004596362.1| - 0.1 12.2 2.7 0.72 9.5 0.3 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.11 gi|336253255|ref|YP_004596362.1| - 0.13 11.9 1.0 0.26 10.9 0.7 1.5 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit zinc_ribbon_5 PF13719.1 gi|336253255|ref|YP_004596362.1| - 0.13 11.8 2.3 8.7 6.0 0.2 2.5 2 0 0 2 2 2 0 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|336253255|ref|YP_004596362.1| - 0.14 11.9 0.4 5.2 6.9 0.0 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zinc_ribbon_4 PF13717.1 gi|336253255|ref|YP_004596362.1| - 0.15 11.7 2.3 10 5.9 0.2 2.5 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|336253255|ref|YP_004596362.1| - 0.7 9.7 3.5 0.42 10.4 0.4 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain HMG-CoA_red PF00368.13 gi|336253256|ref|YP_004596363.1| - 2.4e-141 470.7 2.6 2.7e-141 470.5 1.8 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase DUF2062 PF09835.4 gi|336253257|ref|YP_004596364.1| - 0.015 14.9 4.6 0.021 14.4 3.2 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2062) Amidohydro_3 PF07969.6 gi|336253258|ref|YP_004596365.1| - 2.2e-87 293.9 14.6 2.6e-87 293.6 10.1 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|336253258|ref|YP_004596365.1| - 9.1e-13 48.8 23.9 1.8e-07 31.5 9.0 2.9 1 1 1 2 2 2 2 Amidohydrolase Amidohydro_5 PF13594.1 gi|336253258|ref|YP_004596365.1| - 1.9e-12 46.8 0.4 2.5e-11 43.2 0.1 2.8 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|336253258|ref|YP_004596365.1| - 2e-12 47.4 0.2 2.6e-06 27.3 0.0 3.0 2 1 0 2 2 2 2 Amidohydrolase family HTH_10 PF04967.7 gi|336253259|ref|YP_004596366.1| - 1.1e-18 66.5 0.4 4.9e-18 64.4 0.1 2.0 2 0 0 2 2 2 1 HTH DNA binding domain MarR_2 PF12802.2 gi|336253259|ref|YP_004596366.1| - 2e-06 27.3 0.1 9.8e-06 25.1 0.1 2.2 2 0 0 2 2 2 1 MarR family Sigma70_r4 PF04545.11 gi|336253259|ref|YP_004596366.1| - 2.6e-05 23.4 0.1 8.1e-05 21.8 0.0 1.9 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_24 PF13412.1 gi|336253259|ref|YP_004596366.1| - 7.8e-05 21.9 0.0 0.00014 21.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|336253259|ref|YP_004596366.1| - 0.00059 19.3 0.9 0.0015 18.0 0.6 1.7 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|336253259|ref|YP_004596366.1| - 0.00079 18.8 0.2 0.0016 17.8 0.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_AraC PF00165.18 gi|336253259|ref|YP_004596366.1| - 0.033 14.0 0.0 0.065 13.0 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_27 PF13463.1 gi|336253259|ref|YP_004596366.1| - 0.054 13.8 0.0 0.13 12.6 0.0 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|336253259|ref|YP_004596366.1| - 0.071 12.7 0.2 0.26 10.9 0.0 2.1 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_38 PF13936.1 gi|336253259|ref|YP_004596366.1| - 0.12 11.9 0.1 6.1 6.4 0.0 2.7 2 1 0 2 2 2 0 Helix-turn-helix domain hemP PF10636.4 gi|336253259|ref|YP_004596366.1| - 0.16 11.6 0.0 0.3 10.7 0.0 1.4 1 0 0 1 1 1 0 Hemin uptake protein hemP SPDY PF03771.11 gi|336253260|ref|YP_004596367.1| - 0.021 14.2 0.8 0.021 14.2 0.6 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF317) DUF3618 PF12277.3 gi|336253260|ref|YP_004596367.1| - 7.2 6.7 8.0 1.8 8.6 0.1 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF3618) DUF2267 PF10025.4 gi|336253261|ref|YP_004596368.1| - 1.1e-35 122.3 0.3 1.4e-35 122.1 0.2 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2267) PB1 PF00564.19 gi|336253261|ref|YP_004596368.1| - 0.073 12.7 0.0 31 4.3 0.0 2.9 3 0 0 3 3 3 0 PB1 domain LTD PF00932.14 gi|336253262|ref|YP_004596369.1| - 0.00067 19.7 0.1 0.0012 18.8 0.1 1.4 1 1 0 1 1 1 1 Lamin Tail Domain TAT_signal PF10518.4 gi|336253262|ref|YP_004596369.1| - 8.1 6.7 6.7 0.39 10.8 0.3 2.2 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence GFO_IDH_MocA PF01408.17 gi|336253263|ref|YP_004596370.1| - 1.5e-25 90.0 0.1 2.6e-25 89.2 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|336253263|ref|YP_004596370.1| - 4.1e-12 45.9 0.1 1.2e-11 44.3 0.0 1.8 2 0 0 2 2 2 1 Oxidoreductase family, C-terminal alpha/beta domain NadA PF02445.11 gi|336253264|ref|YP_004596371.1| - 1.4e-102 342.5 0.1 1.6e-102 342.3 0.0 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein FAD_binding_2 PF00890.19 gi|336253265|ref|YP_004596372.1| - 8.8e-75 252.1 3.4 1.1e-74 251.8 2.4 1.1 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.9 gi|336253265|ref|YP_004596372.1| - 5e-13 49.3 1.7 3.7e-06 26.9 0.4 3.3 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|336253265|ref|YP_004596372.1| - 5.4e-12 45.2 0.5 1.1e-09 37.6 0.1 2.5 2 0 0 2 2 2 2 FAD dependent oxidoreductase GIDA PF01134.17 gi|336253265|ref|YP_004596372.1| - 1.2e-09 37.4 0.2 6.4e-07 28.5 0.2 2.2 2 0 0 2 2 2 2 Glucose inhibited division protein A FAD_oxidored PF12831.2 gi|336253265|ref|YP_004596372.1| - 1.7e-09 37.2 7.8 1e-08 34.7 2.1 2.4 2 1 0 2 2 2 1 FAD dependent oxidoreductase Succ_DH_flav_C PF02910.15 gi|336253265|ref|YP_004596372.1| - 2.2e-06 27.5 0.0 4.8e-06 26.4 0.0 1.5 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term NAD_binding_8 PF13450.1 gi|336253265|ref|YP_004596372.1| - 6.9e-05 22.7 0.3 0.00022 21.2 0.2 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|336253265|ref|YP_004596372.1| - 0.00019 20.0 0.2 0.012 14.0 0.4 2.1 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_3 PF01494.14 gi|336253265|ref|YP_004596372.1| - 0.00075 18.6 0.1 0.0013 17.8 0.1 1.4 1 0 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.22 gi|336253265|ref|YP_004596372.1| - 0.0046 17.3 0.1 0.012 15.9 0.0 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|336253265|ref|YP_004596372.1| - 0.052 12.4 0.6 0.082 11.8 0.4 1.3 1 0 0 1 1 1 0 Lycopene cyclase protein 3HCDH_N PF02737.13 gi|336253265|ref|YP_004596372.1| - 0.062 12.9 0.1 0.12 11.9 0.1 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HEAT_2 PF13646.1 gi|336253265|ref|YP_004596372.1| - 0.068 13.4 1.9 2.8 8.3 0.2 2.8 2 1 0 2 2 2 0 HEAT repeats Thi4 PF01946.12 gi|336253265|ref|YP_004596372.1| - 0.087 11.9 0.1 0.23 10.5 0.1 1.6 1 0 0 1 1 1 0 Thi4 family NAD_binding_7 PF13241.1 gi|336253265|ref|YP_004596372.1| - 0.1 12.8 0.1 0.21 11.8 0.0 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding AlaDh_PNT_C PF01262.16 gi|336253265|ref|YP_004596372.1| - 0.11 12.0 0.1 0.19 11.2 0.0 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain ApbA PF02558.11 gi|336253265|ref|YP_004596372.1| - 0.16 11.3 0.0 0.34 10.3 0.0 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA QRPTase_C PF01729.14 gi|336253266|ref|YP_004596373.1| - 5e-56 188.8 2.5 6.3e-56 188.5 1.7 1.1 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.11 gi|336253266|ref|YP_004596373.1| - 5.5e-19 67.7 0.1 1.1e-18 66.7 0.1 1.6 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain PTS_2-RNA PF01885.11 gi|336253267|ref|YP_004596374.1| - 6.7e-47 159.2 0.0 8.4e-47 158.8 0.0 1.0 1 0 0 1 1 1 1 RNA 2'-phosphotransferase, Tpt1 / KptA family TrkA_N PF02254.13 gi|336253268|ref|YP_004596375.1| - 2.4e-27 95.2 2.5 4.5e-27 94.3 1.7 1.4 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|336253268|ref|YP_004596375.1| - 2.7e-14 52.5 0.8 2.5e-13 49.4 0.0 2.5 2 1 0 2 2 2 1 TrkA-C domain F420_oxidored PF03807.12 gi|336253268|ref|YP_004596375.1| - 5e-07 30.0 0.1 9.5e-07 29.1 0.1 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_7 PF13241.1 gi|336253268|ref|YP_004596375.1| - 1.1e-06 28.8 1.7 1.1e-05 25.5 0.2 2.5 2 1 0 2 2 2 1 Putative NAD(P)-binding Saccharop_dh PF03435.13 gi|336253268|ref|YP_004596375.1| - 4.4e-06 25.9 0.6 6e-06 25.4 0.4 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase NAD_binding_10 PF13460.1 gi|336253268|ref|YP_004596375.1| - 3.7e-05 23.8 3.7 4.6e-05 23.5 0.9 2.0 2 0 0 2 2 2 1 NADH(P)-binding 3HCDH_N PF02737.13 gi|336253268|ref|YP_004596375.1| - 5.8e-05 22.8 0.2 9.1e-05 22.1 0.2 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NmrA PF05368.8 gi|336253268|ref|YP_004596375.1| - 0.00015 21.0 0.4 0.00027 20.2 0.2 1.4 1 1 0 1 1 1 1 NmrA-like family XdhC_C PF13478.1 gi|336253268|ref|YP_004596375.1| - 0.00032 21.0 0.3 0.00079 19.7 0.1 1.8 1 1 1 2 2 2 1 XdhC Rossmann domain Shikimate_DH PF01488.15 gi|336253268|ref|YP_004596375.1| - 0.00092 19.3 0.1 0.0014 18.6 0.1 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase NAD_binding_2 PF03446.10 gi|336253268|ref|YP_004596375.1| - 0.0062 16.3 0.1 0.014 15.1 0.0 1.7 2 0 0 2 2 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Epimerase PF01370.16 gi|336253268|ref|YP_004596375.1| - 0.011 15.2 0.1 0.021 14.2 0.1 1.5 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family Peripla_BP_3 PF13377.1 gi|336253268|ref|YP_004596375.1| - 0.014 15.4 0.2 0.033 14.1 0.1 1.6 2 0 0 2 2 2 0 Periplasmic binding protein-like domain ApbA PF02558.11 gi|336253268|ref|YP_004596375.1| - 0.014 14.8 0.0 0.023 14.1 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA DAO PF01266.19 gi|336253268|ref|YP_004596375.1| - 0.017 14.0 0.4 0.078 11.8 0.0 2.0 2 0 0 2 2 2 0 FAD dependent oxidoreductase AlaDh_PNT_C PF01262.16 gi|336253268|ref|YP_004596375.1| - 0.022 14.3 0.1 0.03 13.8 0.0 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain GFO_IDH_MocA PF01408.17 gi|336253268|ref|YP_004596375.1| - 0.022 15.2 1.4 0.041 14.4 0.9 1.6 1 1 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold NAD_Gly3P_dh_N PF01210.18 gi|336253268|ref|YP_004596375.1| - 0.024 14.3 0.1 0.04 13.6 0.0 1.4 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Pyr_redox PF00070.22 gi|336253268|ref|YP_004596375.1| - 0.052 13.9 0.8 0.28 11.6 0.1 2.5 3 0 0 3 3 2 0 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.9 gi|336253268|ref|YP_004596375.1| - 0.054 12.8 0.6 0.3 10.4 0.1 2.0 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CPSase_L_chain PF00289.17 gi|336253268|ref|YP_004596375.1| - 0.23 11.5 1.5 0.22 11.6 0.2 1.6 2 0 0 2 2 1 0 Carbamoyl-phosphate synthase L chain, N-terminal domain adh_short PF00106.20 gi|336253268|ref|YP_004596375.1| - 0.3 11.0 3.0 7.2 6.4 0.0 2.8 2 1 1 3 3 3 0 short chain dehydrogenase TrkH PF02386.11 gi|336253269|ref|YP_004596376.1| - 1.7e-55 188.0 15.3 5.3e-55 186.4 7.9 2.2 2 0 0 2 2 2 2 Cation transport protein Flp_Fap PF04964.9 gi|336253269|ref|YP_004596376.1| - 0.11 12.0 3.1 0.94 9.1 0.0 3.6 3 0 0 3 3 3 0 Flp/Fap pilin component DUF2871 PF11070.3 gi|336253269|ref|YP_004596376.1| - 0.92 9.6 5.3 0.28 11.3 0.4 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF2871) DUF3767 PF12597.3 gi|336253269|ref|YP_004596376.1| - 1 9.0 7.6 0.26 10.9 0.4 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3767) Fer4_15 PF13459.1 gi|336253270|ref|YP_004596377.1| - 0.0079 16.7 4.5 0.012 16.1 1.1 2.4 2 1 1 3 3 3 1 4Fe-4S single cluster domain adh_short PF00106.20 gi|336253271|ref|YP_004596378.1| - 2.7e-17 63.1 3.5 4.8e-17 62.3 2.4 1.5 1 1 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|336253271|ref|YP_004596378.1| - 1.7e-08 34.3 0.2 3.2e-08 33.4 0.1 1.4 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|336253271|ref|YP_004596378.1| - 2.6e-05 23.7 0.0 4.1e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family adh_short_C2 PF13561.1 gi|336253271|ref|YP_004596378.1| - 0.00013 21.8 0.0 0.00021 21.1 0.0 1.2 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase NAD_binding_10 PF13460.1 gi|336253271|ref|YP_004596378.1| - 0.0047 16.9 2.1 0.0077 16.2 1.5 1.6 1 1 0 1 1 1 1 NADH(P)-binding RmlD_sub_bind PF04321.12 gi|336253271|ref|YP_004596378.1| - 0.022 13.6 0.1 0.033 13.0 0.1 1.2 1 0 0 1 1 1 0 RmlD substrate binding domain PAS_9 PF13426.1 gi|336253272|ref|YP_004596379.1| - 7.9e-81 267.1 8.7 4.8e-14 52.5 0.0 8.8 8 1 0 8 8 8 8 PAS domain PAS_4 PF08448.5 gi|336253272|ref|YP_004596379.1| - 9.9e-80 263.7 38.3 5.8e-13 48.8 0.1 9.0 8 1 0 8 8 8 8 PAS fold PAS_3 PF08447.6 gi|336253272|ref|YP_004596379.1| - 1.6e-49 165.9 3.2 3.5e-17 62.2 0.0 8.4 9 0 0 9 9 9 5 PAS fold PAS PF00989.19 gi|336253272|ref|YP_004596379.1| - 9.7e-44 147.7 2.9 3.7e-13 49.2 0.0 9.5 9 0 0 9 9 9 6 PAS fold HATPase_c PF02518.21 gi|336253272|ref|YP_004596379.1| - 1.4e-29 102.0 0.6 1e-28 99.2 0.0 2.6 3 0 0 3 3 3 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|336253272|ref|YP_004596379.1| - 8.7e-25 85.6 2.3 1.3e-08 34.4 0.0 7.8 7 0 0 7 7 7 3 PAS domain PAS_7 PF12860.2 gi|336253272|ref|YP_004596379.1| - 6.2e-13 48.7 6.8 0.0059 16.5 0.0 8.5 8 1 0 8 8 8 2 PAS fold GAF PF01590.21 gi|336253272|ref|YP_004596379.1| - 1.1e-12 48.3 5.9 1.3e-12 48.1 1.7 2.6 2 0 0 2 2 2 1 GAF domain HisKA PF00512.20 gi|336253272|ref|YP_004596379.1| - 5.2e-11 42.3 0.1 3.2e-10 39.8 0.1 2.6 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_10 PF13596.1 gi|336253272|ref|YP_004596379.1| - 1.1e-10 41.7 0.0 0.0087 16.3 0.0 6.4 7 0 0 7 7 6 2 PAS domain GAF_3 PF13492.1 gi|336253272|ref|YP_004596379.1| - 1.5e-10 41.2 8.7 3.2e-10 40.1 0.2 4.5 5 1 0 5 5 5 1 GAF domain GAF_2 PF13185.1 gi|336253272|ref|YP_004596379.1| - 4.1e-10 40.3 9.2 3.3e-09 37.3 1.3 4.1 4 0 0 4 4 4 1 GAF domain HATPase_c_5 PF14501.1 gi|336253272|ref|YP_004596379.1| - 0.00034 20.2 0.0 0.00065 19.3 0.0 1.5 1 0 0 1 1 1 1 GHKL domain HATPase_c_2 PF13581.1 gi|336253272|ref|YP_004596379.1| - 0.0067 16.2 0.4 0.055 13.2 0.0 2.6 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain Pro_isomerase PF00160.16 gi|336253273|ref|YP_004596380.1| - 1.3e-48 165.1 0.0 1.5e-48 164.8 0.0 1.1 1 0 0 1 1 1 1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Pro_isomerase PF00160.16 gi|336253274|ref|YP_004596381.1| - 6.7e-49 166.0 0.0 7.6e-49 165.8 0.0 1.0 1 0 0 1 1 1 1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AstE_AspA PF04952.9 gi|336253275|ref|YP_004596382.1| - 2.6e-34 118.4 0.0 3e-34 118.2 0.0 1.0 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family Peptidase_M14 PF00246.19 gi|336253275|ref|YP_004596382.1| - 2e-05 24.3 0.0 0.00019 21.1 0.0 2.1 1 1 0 1 1 1 1 Zinc carboxypeptidase DUF3006 PF11213.3 gi|336253276|ref|YP_004596383.1| - 0.0077 15.9 4.6 0.012 15.3 3.2 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3006) S-layer PF07752.6 gi|336253276|ref|YP_004596383.1| - 0.042 13.0 1.1 0.052 12.7 0.8 1.1 1 0 0 1 1 1 0 S-layer protein AAA_23 PF13476.1 gi|336253277|ref|YP_004596384.1| - 3.3e-06 27.5 83.8 4.7e+03 -2.4 0.0 5.1 1 1 1 2 2 1 0 AAA domain GAS PF13851.1 gi|336253277|ref|YP_004596384.1| - 0.00047 19.4 64.7 0.13 11.4 13.5 4.2 3 1 1 4 4 4 4 Growth-arrest specific micro-tubule binding Spc7 PF08317.6 gi|336253277|ref|YP_004596384.1| - 0.00083 18.1 71.1 0.0045 15.6 13.2 4.4 2 2 1 4 4 4 3 Spc7 kinetochore protein ALIX_LYPXL_bnd PF13949.1 gi|336253277|ref|YP_004596384.1| - 0.0009 18.2 52.3 0.067 12.1 11.8 2.3 2 0 0 2 2 2 2 ALIX V-shaped domain binding to HIV Atg14 PF10186.4 gi|336253277|ref|YP_004596384.1| - 0.0013 17.7 16.9 0.0013 17.7 11.7 4.1 2 2 0 3 3 3 1 UV radiation resistance protein and autophagy-related subunit 14 NPV_P10 PF05531.7 gi|336253277|ref|YP_004596384.1| - 0.0023 18.1 27.1 1.7 8.9 0.8 6.3 3 3 2 5 5 5 2 Nucleopolyhedrovirus P10 protein IncA PF04156.9 gi|336253277|ref|YP_004596384.1| - 0.0083 15.7 107.6 0.0096 15.5 21.4 4.4 2 2 2 4 4 4 2 IncA protein DUF3584 PF12128.3 gi|336253277|ref|YP_004596384.1| - 0.0085 13.4 60.1 0.034 11.4 20.5 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF3584) FlxA PF14282.1 gi|336253277|ref|YP_004596384.1| - 0.015 15.2 54.2 0.028 14.3 2.2 5.6 2 2 3 5 5 5 0 FlxA-like protein AAA_13 PF13166.1 gi|336253277|ref|YP_004596384.1| - 0.02 13.3 49.0 0.057 11.8 10.0 2.6 2 1 0 2 2 2 0 AAA domain Reo_sigmaC PF04582.7 gi|336253277|ref|YP_004596384.1| - 0.099 11.8 19.0 0.37 9.9 2.4 3.5 2 1 1 3 3 3 0 Reovirus sigma C capsid protein Baculo_PEP_C PF04513.7 gi|336253277|ref|YP_004596384.1| - 0.15 11.9 20.9 2.8 7.7 0.6 5.0 2 2 2 4 4 4 0 Baculovirus polyhedron envelope protein, PEP, C terminus Laminin_II PF06009.7 gi|336253277|ref|YP_004596384.1| - 0.17 11.6 34.6 0.025 14.3 5.1 4.9 3 3 1 4 4 4 0 Laminin Domain II AAA_27 PF13514.1 gi|336253277|ref|YP_004596384.1| - 0.77 7.3 66.2 0.36 8.4 16.1 2.7 2 1 0 2 2 2 0 AAA domain WASH-7_C PF14746.1 gi|336253277|ref|YP_004596384.1| - 0.93 9.0 0.0 0.93 9.0 0.0 3.6 3 2 2 5 5 5 0 WASH complex subunit 7, C-terminal TBPIP PF07106.8 gi|336253277|ref|YP_004596384.1| - 1.4 8.4 66.0 0.052 13.0 6.1 5.3 2 2 2 4 4 4 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) CENP-F_leu_zip PF10473.4 gi|336253277|ref|YP_004596384.1| - 1.9 8.3 93.7 5.3 6.8 14.5 5.1 2 2 2 4 4 4 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Prefoldin PF02996.12 gi|336253277|ref|YP_004596384.1| - 2 8.0 61.0 0.17 11.5 2.7 9.0 3 3 5 9 9 9 0 Prefoldin subunit WXG100 PF06013.7 gi|336253277|ref|YP_004596384.1| - 2.1 8.4 24.9 3.6 7.6 0.0 6.9 3 2 0 6 6 6 0 Proteins of 100 residues with WXG ADIP PF11559.3 gi|336253277|ref|YP_004596384.1| - 2.2 8.1 57.8 0.036 13.9 7.8 5.5 3 2 3 6 6 6 0 Afadin- and alpha -actinin-Binding COG5 PF10392.4 gi|336253277|ref|YP_004596384.1| - 2.5 8.0 29.0 0.034 14.0 1.9 4.4 3 1 0 4 4 4 0 Golgi transport complex subunit 5 Spectrin PF00435.16 gi|336253277|ref|YP_004596384.1| - 3.4 7.9 62.6 2.9 8.2 3.1 6.1 2 2 3 5 5 5 0 Spectrin repeat Seryl_tRNA_N PF02403.17 gi|336253277|ref|YP_004596384.1| - 5.3 7.1 68.1 0.35 10.8 5.4 5.6 2 2 2 5 5 4 0 Seryl-tRNA synthetase N-terminal domain Fib_alpha PF08702.5 gi|336253277|ref|YP_004596384.1| - 5.9 6.9 37.4 1.9 8.6 6.3 4.9 3 1 2 5 5 5 0 Fibrinogen alpha/beta chain family COG2 PF06148.6 gi|336253277|ref|YP_004596384.1| - 6.3 6.6 44.5 0.91 9.3 3.7 6.1 2 1 2 5 5 5 0 COG (conserved oligomeric Golgi) complex component, COG2 PilJ PF13675.1 gi|336253277|ref|YP_004596384.1| - 6.3 7.1 39.1 0.45 10.8 1.0 6.0 2 2 3 5 5 5 0 Type IV pili methyl-accepting chemotaxis transducer N-term Mnd1 PF03962.10 gi|336253277|ref|YP_004596384.1| - 7 6.2 69.2 0.28 10.8 10.0 5.3 3 2 3 6 6 5 0 Mnd1 family HrpA_pilin PF09589.5 gi|336253277|ref|YP_004596384.1| - 9.2 6.7 6.7 5.4 7.4 0.4 3.3 2 1 0 2 2 2 0 HrpA pilus formation protein Acyl-CoA_dh_1 PF00441.19 gi|336253278|ref|YP_004596385.1| - 3.5e-33 114.8 0.9 8.4e-33 113.5 0.8 1.5 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|336253278|ref|YP_004596385.1| - 5.3e-24 84.9 0.2 3.8e-23 82.2 0.1 2.3 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.14 gi|336253278|ref|YP_004596385.1| - 2e-21 75.2 0.0 5e-21 73.9 0.0 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|336253278|ref|YP_004596385.1| - 6.1e-11 42.7 0.7 9.8e-11 42.0 0.5 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain HpaB_N PF11794.3 gi|336253278|ref|YP_004596385.1| - 0.016 14.5 0.0 0.037 13.4 0.0 1.6 1 1 0 1 1 1 0 4-hydroxyphenylacetate 3-hydroxylase N terminal FAD-oxidase_C PF02913.14 gi|336253279|ref|YP_004596386.1| - 2e-63 214.0 0.0 3.8e-63 213.0 0.0 1.5 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.18 gi|336253279|ref|YP_004596386.1| - 6.5e-43 145.5 0.0 1.4e-42 144.4 0.0 1.6 1 0 0 1 1 1 1 FAD binding domain CCG PF02754.11 gi|336253279|ref|YP_004596386.1| - 2e-08 34.1 0.0 0.00012 21.9 0.0 2.7 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_17 PF13534.1 gi|336253279|ref|YP_004596386.1| - 2.6e-07 30.8 3.3 5.9e-07 29.7 2.3 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|336253279|ref|YP_004596386.1| - 2.7e-07 30.4 5.1 5.5e-07 29.5 3.6 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|336253279|ref|YP_004596386.1| - 7.2e-06 26.3 2.2 1.8e-05 25.0 0.3 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Cytokin-bind PF09265.5 gi|336253279|ref|YP_004596386.1| - 3.1e-05 23.2 0.2 6e-05 22.3 0.1 1.4 1 0 0 1 1 1 1 Cytokinin dehydrogenase 1, FAD and cytokinin binding Fer4_21 PF14697.1 gi|336253279|ref|YP_004596386.1| - 0.03 14.1 3.4 0.27 11.1 0.2 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain TSNR_N PF04705.7 gi|336253279|ref|YP_004596386.1| - 0.16 11.7 0.1 17 5.2 0.0 2.5 2 0 0 2 2 2 0 Thiostrepton-resistance methylase, N terminus Fer4_10 PF13237.1 gi|336253279|ref|YP_004596386.1| - 0.32 10.8 7.2 0.6 9.9 0.8 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|336253279|ref|YP_004596386.1| - 0.85 9.9 9.4 0.38 11.0 0.9 2.5 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|336253279|ref|YP_004596386.1| - 2.3 8.6 9.4 2 8.8 1.3 2.6 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|336253279|ref|YP_004596386.1| - 5.5 7.1 9.3 3.5 7.7 1.5 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Glycos_transf_3 PF00591.16 gi|336253281|ref|YP_004596388.1| - 1.7e-34 119.3 0.0 2.7e-34 118.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.12 gi|336253281|ref|YP_004596388.1| - 1.3e-14 53.5 0.1 8.8e-14 50.8 0.0 2.4 2 0 0 2 2 2 1 Glycosyl transferase family, helical bundle domain Bax1-I PF01027.15 gi|336253282|ref|YP_004596389.1| - 0.2 11.2 13.8 0.24 10.9 9.6 1.0 1 0 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 Mem_trans PF03547.13 gi|336253282|ref|YP_004596389.1| - 0.31 9.2 5.8 0.36 9.0 4.0 1.1 1 0 0 1 1 1 0 Membrane transport protein YfhO PF09586.5 gi|336253282|ref|YP_004596389.1| - 1.3 6.9 4.3 1.5 6.7 3.0 1.1 1 0 0 1 1 1 0 Bacterial membrane protein YfhO DUF1761 PF08570.5 gi|336253282|ref|YP_004596389.1| - 5.1 7.1 10.2 0.64 10.0 1.3 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1761) FxsA PF04186.8 gi|336253283|ref|YP_004596390.1| - 3.3e-25 88.0 9.0 4.3e-25 87.6 6.2 1.1 1 0 0 1 1 1 1 FxsA cytoplasmic membrane protein Thioredox_DsbH PF03190.10 gi|336253284|ref|YP_004596391.1| - 1.1e-29 103.2 0.0 1.8e-29 102.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.1 gi|336253284|ref|YP_004596391.1| - 5.2e-12 45.6 0.0 1.1e-11 44.5 0.0 1.6 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin PF00085.15 gi|336253284|ref|YP_004596391.1| - 3.4e-09 36.3 0.0 6e-09 35.5 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|336253284|ref|YP_004596391.1| - 1.7e-07 31.3 0.0 1e-06 28.8 0.0 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain Glyco_hydro_88 PF07470.8 gi|336253284|ref|YP_004596391.1| - 0.0019 17.3 1.2 0.56 9.1 0.0 2.7 4 0 0 4 4 4 2 Glycosyl Hydrolase Family 88 Thioredoxin_8 PF13905.1 gi|336253284|ref|YP_004596391.1| - 0.045 13.8 0.1 5 7.3 0.0 2.3 1 1 1 2 2 2 0 Thioredoxin-like Glyco_hydro_76 PF03663.9 gi|336253284|ref|YP_004596391.1| - 0.094 12.0 0.2 3.5 6.9 0.1 2.1 1 1 1 2 2 2 0 Glycosyl hydrolase family 76 C5-epim_C PF06662.8 gi|336253284|ref|YP_004596391.1| - 0.21 10.8 0.1 3.1 7.0 0.0 2.2 2 0 0 2 2 2 0 D-glucuronyl C5-epimerase C-terminus TrmB PF01978.14 gi|336253285|ref|YP_004596392.1| - 4.2e-20 71.2 0.1 7.3e-20 70.4 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Regulator_TrmB PF11495.3 gi|336253285|ref|YP_004596392.1| - 0.029 13.3 0.0 0.05 12.5 0.0 1.3 1 0 0 1 1 1 0 Archaeal transcriptional regulator TrmB PadR PF03551.9 gi|336253285|ref|YP_004596392.1| - 0.066 12.9 0.0 0.14 11.9 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family Vir_act_alpha_C PF10400.4 gi|336253285|ref|YP_004596392.1| - 0.61 10.4 3.6 0.26 11.6 0.3 2.1 2 1 1 3 3 3 0 Virulence activator alpha C-term GCHY-1 PF02649.9 gi|336253286|ref|YP_004596393.1| - 4.1e-87 291.9 3.9 4.7e-87 291.7 2.7 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 RecX PF02631.11 gi|336253286|ref|YP_004596393.1| - 0.031 14.5 0.4 0.86 9.8 0.0 2.5 3 0 0 3 3 3 0 RecX family DUF4167 PF13763.1 gi|336253286|ref|YP_004596393.1| - 0.034 14.1 1.1 0.075 13.0 0.7 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4167) PASTA PF03793.14 gi|336253286|ref|YP_004596393.1| - 0.055 13.1 0.0 0.16 11.6 0.0 1.8 1 0 0 1 1 1 0 PASTA domain DUF1396 PF07161.8 gi|336253287|ref|YP_004596394.1| - 0.0011 18.6 0.0 0.0047 16.6 0.0 1.9 2 1 0 2 2 2 1 Protein of unknown function (DUF1396) TetR_C_6 PF13977.1 gi|336253287|ref|YP_004596394.1| - 0.047 13.7 0.2 0.12 12.4 0.1 1.7 1 1 0 1 1 1 0 Bacterial transcriptional repressor RE_Bsp6I PF09504.5 gi|336253287|ref|YP_004596394.1| - 0.15 11.5 0.0 0.22 10.9 0.0 1.2 1 0 0 1 1 1 0 Bsp6I restriction endonuclease Radical_SAM PF04055.16 gi|336253288|ref|YP_004596395.1| - 2.5e-25 89.5 0.4 5.3e-25 88.5 0.1 1.7 2 0 0 2 2 2 1 Radical SAM superfamily UPF0004 PF00919.15 gi|336253288|ref|YP_004596395.1| - 7.8e-19 67.3 0.1 2.2e-18 65.8 0.0 1.8 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 TRAM PF01938.15 gi|336253288|ref|YP_004596395.1| - 0.068 12.9 0.0 0.14 11.9 0.0 1.5 1 0 0 1 1 1 0 TRAM domain Peptidase_M48 PF01435.13 gi|336253289|ref|YP_004596396.1| - 5.9e-26 91.4 0.0 9.2e-26 90.7 0.0 1.3 1 1 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|336253289|ref|YP_004596396.1| - 0.0007 18.6 3.9 0.0022 17.0 0.0 2.6 3 0 0 3 3 3 1 BlaR1 peptidase M56 SprT-like PF10263.4 gi|336253289|ref|YP_004596396.1| - 0.0027 17.3 0.0 0.0093 15.6 0.0 1.8 2 0 0 2 2 2 1 SprT-like family Peptidase_MA_2 PF13485.1 gi|336253289|ref|YP_004596396.1| - 0.0046 16.9 0.1 0.0097 15.9 0.1 1.5 1 0 0 1 1 1 1 Peptidase MA superfamily DUF2268 PF10026.4 gi|336253289|ref|YP_004596396.1| - 0.068 12.5 0.0 0.11 11.8 0.0 1.2 1 0 0 1 1 1 0 Predicted Zn-dependent protease (DUF2268) DUF4129 PF13559.1 gi|336253290|ref|YP_004596397.1| - 8.3e-08 32.0 10.4 8.3e-08 32.0 7.2 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4129) DUF4198 PF10670.4 gi|336253290|ref|YP_004596397.1| - 5.9e-05 23.1 0.9 0.01 15.8 0.0 2.4 2 1 0 2 2 2 2 Domain of unknown function (DUF4198) DUF4480 PF13715.1 gi|336253290|ref|YP_004596397.1| - 0.00088 19.2 0.3 2.5 8.1 0.0 3.0 3 0 0 3 3 3 2 Domain of unknown function (DUF4480) CarboxypepD_reg PF13620.1 gi|336253290|ref|YP_004596397.1| - 0.0018 18.2 15.9 0.017 15.1 0.5 3.4 4 0 0 4 4 4 2 Carboxypeptidase regulatory-like domain DUF58 PF01882.13 gi|336253292|ref|YP_004596399.1| - 1.1e-14 54.2 0.7 2.5e-14 53.1 0.5 1.6 1 0 0 1 1 1 1 Protein of unknown function DUF58 DUF11 PF01345.13 gi|336253292|ref|YP_004596399.1| - 3.1e-06 27.1 3.5 3.1e-06 27.1 2.4 2.1 2 0 0 2 2 2 1 Domain of unknown function DUF11 NPCBM_assoc PF10633.4 gi|336253292|ref|YP_004596399.1| - 3.1e-05 23.9 3.5 3.1e-05 23.9 0.6 2.5 3 0 0 3 3 3 1 NPCBM-associated, NEW3 domain of alpha-galactosidase TRAP_beta PF05753.9 gi|336253292|ref|YP_004596399.1| - 0.019 14.1 0.1 0.031 13.4 0.1 1.2 1 0 0 1 1 1 0 Translocon-associated protein beta (TRAPB) Acetyltransf_6 PF13480.1 gi|336253292|ref|YP_004596399.1| - 0.053 13.4 0.2 0.053 13.4 0.1 2.5 3 1 0 3 3 3 0 Acetyltransferase (GNAT) domain AAA_3 PF07726.6 gi|336253294|ref|YP_004596401.1| - 2.3e-65 218.1 0.1 3.5e-65 217.5 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|336253294|ref|YP_004596401.1| - 1.1e-15 57.6 0.0 2e-15 56.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|336253294|ref|YP_004596401.1| - 6.2e-06 26.4 0.0 2.2e-05 24.6 0.0 2.0 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|336253294|ref|YP_004596401.1| - 5.4e-05 22.7 0.0 0.00085 18.8 0.0 2.1 1 1 0 1 1 1 1 Sigma-54 interaction domain MCM PF00493.18 gi|336253294|ref|YP_004596401.1| - 0.00023 20.0 0.0 0.018 13.8 0.0 2.2 2 0 0 2 2 2 2 MCM2/3/5 family RuvB_N PF05496.7 gi|336253294|ref|YP_004596401.1| - 0.012 14.6 0.0 0.31 10.0 0.0 2.5 1 1 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus Mg_chelatase PF01078.16 gi|336253294|ref|YP_004596401.1| - 0.093 11.8 0.1 2.9 6.9 0.0 2.1 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI KaiC PF06745.8 gi|336253294|ref|YP_004596401.1| - 0.11 11.5 0.0 0.18 10.9 0.0 1.2 1 0 0 1 1 1 0 KaiC Phage_GPL PF05926.6 gi|336253294|ref|YP_004596401.1| - 0.13 12.0 0.1 0.54 10.0 0.0 2.0 2 0 0 2 2 2 0 Phage head completion protein (GPL) Radical_SAM PF04055.16 gi|336253295|ref|YP_004596402.1| - 2.4e-12 47.3 0.0 4e-12 46.6 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily DUF4516 PF14990.1 gi|336253296|ref|YP_004596403.1| - 0.11 12.0 0.0 0.14 11.7 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4516) CofC PF01983.11 gi|336253297|ref|YP_004596404.1| - 1e-40 139.0 0.0 1.2e-40 138.7 0.0 1.1 1 0 0 1 1 1 1 Guanylyl transferase CofC like NTP_transf_3 PF12804.2 gi|336253297|ref|YP_004596404.1| - 0.016 15.3 3.6 0.028 14.5 2.4 1.5 1 1 0 1 1 1 0 MobA-like NTP transferase domain Tubulin PF00091.20 gi|336253298|ref|YP_004596405.1| - 3.9e-25 88.9 0.1 8.3e-25 87.8 0.0 1.5 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain NAD_binding_10 PF13460.1 gi|336253299|ref|YP_004596406.1| - 3.7e-28 98.7 0.1 5.8e-28 98.1 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding Epimerase PF01370.16 gi|336253299|ref|YP_004596406.1| - 8.1e-22 77.8 0.0 1.9e-20 73.3 0.0 2.1 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|336253299|ref|YP_004596406.1| - 2.1e-13 49.8 0.0 2.1e-07 30.1 0.0 2.2 2 0 0 2 2 2 2 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|336253299|ref|YP_004596406.1| - 7.3e-13 47.8 0.0 1.7e-11 43.3 0.0 2.1 1 1 0 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family NmrA PF05368.8 gi|336253299|ref|YP_004596406.1| - 1.9e-09 37.1 0.0 2.9e-09 36.5 0.0 1.4 1 0 0 1 1 1 1 NmrA-like family NAD_binding_4 PF07993.7 gi|336253299|ref|YP_004596406.1| - 7.3e-05 21.8 0.0 0.077 11.9 0.0 2.5 1 1 0 2 2 2 2 Male sterility protein adh_short PF00106.20 gi|336253299|ref|YP_004596406.1| - 0.00014 21.8 0.2 0.00028 20.8 0.1 1.6 1 1 0 1 1 1 1 short chain dehydrogenase Polysacc_synt_2 PF02719.10 gi|336253299|ref|YP_004596406.1| - 0.0018 17.2 0.1 0.032 13.1 0.0 2.3 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Glyco_trans_4_4 PF13579.1 gi|336253299|ref|YP_004596406.1| - 0.0042 17.2 0.5 0.031 14.4 0.0 2.3 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain F420_oxidored PF03807.12 gi|336253299|ref|YP_004596406.1| - 0.0061 16.9 0.0 0.022 15.1 0.0 2.0 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|336253299|ref|YP_004596406.1| - 0.0071 16.1 0.0 0.012 15.4 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Saccharop_dh PF03435.13 gi|336253299|ref|YP_004596406.1| - 0.009 15.0 0.0 0.014 14.4 0.0 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase UDPG_MGDP_dh_N PF03721.9 gi|336253299|ref|YP_004596406.1| - 0.01 15.2 0.0 0.019 14.3 0.0 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Glyco_transf_4 PF13439.1 gi|336253299|ref|YP_004596406.1| - 0.017 14.8 0.0 0.042 13.5 0.0 1.6 2 0 0 2 2 2 0 Glycosyltransferase Family 4 DapB_N PF01113.15 gi|336253299|ref|YP_004596406.1| - 0.027 14.3 0.0 0.081 12.8 0.0 1.8 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus KR PF08659.5 gi|336253299|ref|YP_004596406.1| - 0.036 13.7 0.0 0.089 12.4 0.0 1.7 2 0 0 2 2 2 0 KR domain Pyr_redox PF00070.22 gi|336253299|ref|YP_004596406.1| - 0.075 13.4 0.0 0.38 11.2 0.0 2.2 3 0 0 3 3 2 0 Pyridine nucleotide-disulphide oxidoreductase Thymidylate_kin PF02223.12 gi|336253300|ref|YP_004596407.1| - 8e-37 126.4 0.0 1.5e-36 125.5 0.0 1.4 1 1 0 1 1 1 1 Thymidylate kinase AAA_18 PF13238.1 gi|336253300|ref|YP_004596407.1| - 4.9e-06 26.8 0.0 2.2e-05 24.7 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|336253300|ref|YP_004596407.1| - 2.1e-05 24.4 0.0 6.4e-05 22.8 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|336253300|ref|YP_004596407.1| - 0.00022 21.2 0.2 0.00029 20.8 0.1 1.4 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|336253300|ref|YP_004596407.1| - 0.00045 21.0 0.9 0.0017 19.1 0.6 2.0 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.9 gi|336253300|ref|YP_004596407.1| - 0.035 13.8 0.0 0.055 13.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) dNK PF01712.14 gi|336253300|ref|YP_004596407.1| - 0.058 13.2 0.0 0.092 12.6 0.0 1.3 1 0 0 1 1 1 0 Deoxynucleoside kinase AAA_22 PF13401.1 gi|336253300|ref|YP_004596407.1| - 0.089 12.9 0.0 0.19 11.8 0.0 1.6 2 0 0 2 2 2 0 AAA domain AsnC_trans_reg PF01037.16 gi|336253301|ref|YP_004596408.1| - 2.5e-12 46.3 0.1 2.8e-12 46.1 0.1 1.0 1 0 0 1 1 1 1 AsnC family HHH_5 PF14520.1 gi|336253301|ref|YP_004596408.1| - 0.14 12.3 0.3 0.21 11.8 0.2 1.2 1 0 0 1 1 1 0 Helix-hairpin-helix domain TrkA_N PF02254.13 gi|336253302|ref|YP_004596409.1| - 5e-27 94.2 0.2 7.9e-27 93.5 0.2 1.3 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|336253302|ref|YP_004596409.1| - 1.1e-13 50.5 0.4 2.7e-13 49.3 0.3 1.7 1 0 0 1 1 1 1 TrkA-C domain NAD_binding_10 PF13460.1 gi|336253302|ref|YP_004596409.1| - 2e-07 31.1 0.2 3.2e-07 30.5 0.1 1.3 1 0 0 1 1 1 1 NADH(P)-binding UDPG_MGDP_dh_N PF03721.9 gi|336253302|ref|YP_004596409.1| - 4.7e-07 29.3 0.0 8.4e-07 28.5 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DAO PF01266.19 gi|336253302|ref|YP_004596409.1| - 1.1e-06 27.8 0.0 1.9e-06 27.0 0.0 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_7 PF13241.1 gi|336253302|ref|YP_004596409.1| - 2e-06 27.9 0.1 3.7e-06 27.1 0.1 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding ApbA PF02558.11 gi|336253302|ref|YP_004596409.1| - 3.2e-06 26.6 0.0 5.5e-06 25.9 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA FAD_binding_3 PF01494.14 gi|336253302|ref|YP_004596409.1| - 4.3e-06 26.0 0.1 5.2e-06 25.7 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.22 gi|336253302|ref|YP_004596409.1| - 8.5e-06 26.0 0.1 1.7e-05 25.1 0.0 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|336253302|ref|YP_004596409.1| - 4.8e-05 23.3 0.0 0.00057 19.8 0.0 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|336253302|ref|YP_004596409.1| - 0.00033 20.3 0.0 0.0005 19.7 0.0 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_8 PF13450.1 gi|336253302|ref|YP_004596409.1| - 0.0004 20.3 0.0 0.00075 19.4 0.0 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain NAD_binding_2 PF03446.10 gi|336253302|ref|YP_004596409.1| - 0.00054 19.8 0.0 0.0083 15.9 0.0 2.2 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase AlaDh_PNT_C PF01262.16 gi|336253302|ref|YP_004596409.1| - 0.0011 18.5 0.0 0.0018 17.8 0.0 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain XdhC_C PF13478.1 gi|336253302|ref|YP_004596409.1| - 0.0012 19.1 0.0 0.002 18.4 0.0 1.3 1 0 0 1 1 1 1 XdhC Rossmann domain FAD_binding_2 PF00890.19 gi|336253302|ref|YP_004596409.1| - 0.0017 17.3 0.0 0.022 13.6 0.0 2.0 2 0 0 2 2 2 1 FAD binding domain 2-Hacid_dh_C PF02826.14 gi|336253302|ref|YP_004596409.1| - 0.0029 16.7 0.0 0.022 13.9 0.0 2.0 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Saccharop_dh PF03435.13 gi|336253302|ref|YP_004596409.1| - 0.0033 16.4 0.1 0.0051 15.8 0.1 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase IlvN PF07991.7 gi|336253302|ref|YP_004596409.1| - 0.0046 16.3 0.0 0.0088 15.4 0.0 1.5 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain NAD_Gly3P_dh_N PF01210.18 gi|336253302|ref|YP_004596409.1| - 0.0046 16.6 0.0 0.0074 16.0 0.0 1.4 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus F420_oxidored PF03807.12 gi|336253302|ref|YP_004596409.1| - 0.0066 16.8 0.1 0.05 14.0 0.0 2.1 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.15 gi|336253302|ref|YP_004596409.1| - 0.0084 16.2 0.1 0.016 15.3 0.0 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase HI0933_like PF03486.9 gi|336253302|ref|YP_004596409.1| - 0.02 13.4 0.0 0.027 12.9 0.0 1.1 1 0 0 1 1 1 0 HI0933-like protein adh_short PF00106.20 gi|336253302|ref|YP_004596409.1| - 0.026 14.4 0.4 0.066 13.1 0.3 1.6 1 0 0 1 1 1 0 short chain dehydrogenase Thi4 PF01946.12 gi|336253302|ref|YP_004596409.1| - 0.043 12.8 0.0 0.084 11.9 0.0 1.4 1 0 0 1 1 1 0 Thi4 family B12-binding PF02310.14 gi|336253302|ref|YP_004596409.1| - 0.045 13.6 0.0 0.083 12.7 0.0 1.5 1 0 0 1 1 1 0 B12 binding domain Glyco_trans_4_4 PF13579.1 gi|336253302|ref|YP_004596409.1| - 0.077 13.1 1.1 0.22 11.6 0.7 1.7 1 1 0 1 1 1 0 Glycosyl transferase 4-like domain GFO_IDH_MocA PF01408.17 gi|336253302|ref|YP_004596409.1| - 0.1 13.1 0.0 0.18 12.3 0.0 1.5 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold CPSase_L_chain PF00289.17 gi|336253302|ref|YP_004596409.1| - 0.11 12.6 0.0 0.19 11.8 0.0 1.5 1 1 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, N-terminal domain AsnC_trans_reg PF01037.16 gi|336253303|ref|YP_004596410.1| - 3.8e-10 39.3 0.1 4.2e-10 39.1 0.1 1.0 1 0 0 1 1 1 1 AsnC family DUF1869 PF08956.5 gi|336253306|ref|YP_004596413.1| - 0.096 12.3 0.4 0.16 11.5 0.3 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1869) Cys_Met_Meta_PP PF01053.15 gi|336253307|ref|YP_004596414.1| - 4.6e-139 463.0 0.0 5.2e-139 462.8 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.16 gi|336253307|ref|YP_004596414.1| - 4.7e-08 32.3 0.0 6.7e-08 31.8 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|336253307|ref|YP_004596414.1| - 2.1e-07 30.3 0.9 3.1e-06 26.4 0.3 2.1 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|336253307|ref|YP_004596414.1| - 0.0043 16.2 0.0 0.0077 15.4 0.0 1.4 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.14 gi|336253307|ref|YP_004596414.1| - 0.0052 15.5 0.7 0.0084 14.8 0.0 1.7 3 0 0 3 3 3 1 Aminotransferase class-V SLA_LP_auto_ag PF05889.8 gi|336253307|ref|YP_004596414.1| - 0.0086 14.5 0.0 0.013 13.9 0.0 1.2 1 0 0 1 1 1 1 Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) DUF4115 PF13464.1 gi|336253308|ref|YP_004596415.1| - 0.017 14.7 1.9 0.032 13.8 0.1 2.3 3 0 0 3 3 3 0 Domain of unknown function (DUF4115) DUF839 PF05787.8 gi|336253309|ref|YP_004596416.1| - 4e-22 78.8 2.9 7.9e-20 71.2 1.0 3.6 2 1 1 3 3 3 1 Bacterial protein of unknown function (DUF839) EF-hand_7 PF13499.1 gi|336253309|ref|YP_004596416.1| - 0.00026 21.0 4.0 0.019 15.1 1.9 3.0 2 0 0 2 2 2 1 EF-hand domain pair EF-hand_1 PF00036.27 gi|336253309|ref|YP_004596416.1| - 0.017 14.4 8.5 0.58 9.5 0.1 4.2 4 0 0 4 4 4 0 EF hand EF-hand_6 PF13405.1 gi|336253309|ref|YP_004596416.1| - 1 9.4 5.4 5.3 7.1 0.1 3.9 3 0 0 3 3 3 0 EF-hand domain HTH_35 PF13693.1 gi|336253310|ref|YP_004596417.1| - 0.052 13.3 0.0 0.085 12.6 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding iPGM_N PF06415.8 gi|336253311|ref|YP_004596418.1| - 6.3e-77 257.8 0.1 8.4e-77 257.4 0.1 1.2 1 0 0 1 1 1 1 BPG-independent PGAM N-terminus (iPGM_N) Metalloenzyme PF01676.13 gi|336253311|ref|YP_004596418.1| - 3.8e-76 255.8 0.3 4.3e-76 255.6 0.2 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.17 gi|336253311|ref|YP_004596418.1| - 5.9e-10 38.9 0.2 3.6e-09 36.4 0.1 2.1 2 0 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.18 gi|336253311|ref|YP_004596418.1| - 3.5e-05 23.1 0.4 0.00015 21.0 0.1 2.2 2 1 0 2 2 2 1 Sulfatase PglZ PF08665.7 gi|336253311|ref|YP_004596418.1| - 0.00091 18.9 0.0 0.0023 17.6 0.0 1.7 1 0 0 1 1 1 1 PglZ domain VKG_Carbox PF05090.9 gi|336253312|ref|YP_004596419.1| - 9.3e-11 41.2 2.4 4e-07 29.2 0.1 2.1 2 0 0 2 2 2 2 Vitamin K-dependent gamma-carboxylase DUF2613 PF11021.3 gi|336253312|ref|YP_004596419.1| - 0.093 12.4 0.3 0.28 10.9 0.2 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF2613) DUF393 PF04134.7 gi|336253313|ref|YP_004596420.1| - 1.1e-28 100.5 0.0 1.3e-28 100.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function, DUF393 NurA PF09376.5 gi|336253314|ref|YP_004596421.1| - 3.9e-29 101.8 0.0 5.2e-29 101.4 0.0 1.1 1 0 0 1 1 1 1 NurA domain 5_nucleotid_C PF02872.13 gi|336253315|ref|YP_004596422.1| - 6.4e-27 94.4 0.0 1.3e-26 93.4 0.0 1.5 1 0 0 1 1 1 1 5'-nucleotidase, C-terminal domain Metallophos PF00149.23 gi|336253315|ref|YP_004596422.1| - 0.05 12.9 0.4 0.093 12.1 0.2 1.4 1 0 0 1 1 1 0 Calcineurin-like phosphoesterase UCR_Fe-S_N PF10399.4 gi|336253315|ref|YP_004596422.1| - 0.092 11.9 2.2 0.21 10.8 1.5 1.6 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Cohesin PF00963.13 gi|336253316|ref|YP_004596423.1| - 1.9e-05 24.5 0.0 3.9e-05 23.5 0.0 1.5 1 0 0 1 1 1 1 Cohesin domain Cohesin PF00963.13 gi|336253319|ref|YP_004596426.1| - 7.6e-09 35.5 0.3 1.6e-08 34.5 0.2 1.5 1 0 0 1 1 1 1 Cohesin domain AAA_10 PF12846.2 gi|336253320|ref|YP_004596427.1| - 2.6e-19 69.7 0.0 1.5e-17 63.9 0.0 2.1 1 1 0 1 1 1 1 AAA-like domain DUF87 PF01935.12 gi|336253320|ref|YP_004596427.1| - 9.9e-09 35.3 0.0 1.9e-08 34.3 0.0 1.4 1 1 0 1 1 1 1 Domain of unknown function DUF87 DUF853 PF05872.7 gi|336253320|ref|YP_004596427.1| - 3e-07 29.1 0.3 0.00057 18.3 0.1 2.4 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) HAS-barrel PF09378.5 gi|336253320|ref|YP_004596427.1| - 3.8e-05 23.4 0.0 0.00038 20.2 0.0 2.5 3 0 0 3 3 3 1 HAS barrel domain FtsK_SpoIIIE PF01580.13 gi|336253320|ref|YP_004596427.1| - 6.7e-05 22.4 0.0 0.01 15.3 0.0 2.3 2 0 0 2 2 2 1 FtsK/SpoIIIE family Zot PF05707.7 gi|336253320|ref|YP_004596427.1| - 0.006 16.0 0.0 0.35 10.3 0.0 2.3 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) T2SE PF00437.15 gi|336253320|ref|YP_004596427.1| - 0.0065 15.4 0.0 0.012 14.5 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein TrwB_AAD_bind PF10412.4 gi|336253320|ref|YP_004596427.1| - 0.011 14.3 0.0 0.019 13.6 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA PF00004.24 gi|336253320|ref|YP_004596427.1| - 0.037 14.2 0.3 1.1 9.4 0.1 2.3 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|336253320|ref|YP_004596427.1| - 0.037 14.1 0.0 0.21 11.6 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|336253320|ref|YP_004596427.1| - 0.04 13.6 0.0 0.13 11.9 0.0 1.9 1 0 0 1 1 1 0 Part of AAA domain FRG PF08867.6 gi|336253322|ref|YP_004596429.1| - 2.5e-22 79.3 0.0 4.2e-22 78.6 0.0 1.3 1 0 0 1 1 1 1 FRG domain adh_short_C2 PF13561.1 gi|336253323|ref|YP_004596430.1| - 4.6e-37 128.0 0.1 5.3e-37 127.8 0.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|336253323|ref|YP_004596430.1| - 2e-32 112.3 3.3 2.6e-32 112.0 2.3 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|336253323|ref|YP_004596430.1| - 3.4e-12 46.3 0.8 5.1e-12 45.8 0.6 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|336253323|ref|YP_004596430.1| - 1.4e-06 27.9 0.8 2.4e-06 27.1 0.5 1.4 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|336253323|ref|YP_004596430.1| - 0.0018 18.3 0.4 0.0025 17.8 0.3 1.3 1 0 0 1 1 1 1 NADH(P)-binding Saccharop_dh PF03435.13 gi|336253323|ref|YP_004596430.1| - 0.0043 16.0 1.0 0.0043 16.0 0.7 1.4 2 0 0 2 2 2 1 Saccharopine dehydrogenase 3HCDH_N PF02737.13 gi|336253323|ref|YP_004596430.1| - 0.052 13.1 1.1 0.092 12.3 0.8 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HHH_5 PF14520.1 gi|336253323|ref|YP_004596430.1| - 0.11 12.6 0.8 0.48 10.6 0.6 2.0 2 1 0 2 2 2 0 Helix-hairpin-helix domain DUF2188 PF09954.4 gi|336253323|ref|YP_004596430.1| - 0.15 12.0 0.7 0.62 10.0 0.1 2.1 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2188) SpoIIAA-like PF11964.3 gi|336253324|ref|YP_004596431.1| - 0.00012 22.3 0.2 0.00016 21.9 0.2 1.2 1 0 0 1 1 1 1 SpoIIAA-like Abhydrolase_5 PF12695.2 gi|336253325|ref|YP_004596432.1| - 1e-12 48.0 0.1 1.3e-12 47.6 0.1 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|336253325|ref|YP_004596432.1| - 1.7e-08 34.6 6.8 0.0019 18.1 0.0 2.2 1 1 1 2 2 2 2 Alpha/beta hydrolase family DLH PF01738.13 gi|336253325|ref|YP_004596432.1| - 6e-08 32.2 0.0 7.1e-08 32.0 0.0 1.1 1 0 0 1 1 1 1 Dienelactone hydrolase family Peptidase_S15 PF02129.13 gi|336253325|ref|YP_004596432.1| - 2.4e-05 23.8 0.0 2.7e-05 23.7 0.0 1.2 1 0 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) BAAT_C PF08840.6 gi|336253325|ref|YP_004596432.1| - 0.00078 19.2 0.0 0.0028 17.4 0.0 1.6 1 1 1 2 2 2 1 BAAT / Acyl-CoA thioester hydrolase C terminal Thioesterase PF00975.15 gi|336253325|ref|YP_004596432.1| - 0.0058 16.8 0.1 0.55 10.4 0.1 2.2 1 1 1 2 2 2 1 Thioesterase domain FSH1 PF03959.8 gi|336253325|ref|YP_004596432.1| - 0.027 13.9 0.0 0.096 12.1 0.0 1.7 1 1 0 1 1 1 0 Serine hydrolase (FSH1) Peptidase_S9 PF00326.16 gi|336253325|ref|YP_004596432.1| - 0.09 11.9 0.0 4 6.5 0.1 2.1 1 1 1 2 2 2 0 Prolyl oligopeptidase family Abhydrolase_6 PF12697.2 gi|336253326|ref|YP_004596433.1| - 4.4e-36 124.8 8.7 5.2e-36 124.6 6.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|336253326|ref|YP_004596433.1| - 4.5e-21 75.1 0.4 1.1e-20 73.8 0.2 1.6 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|336253326|ref|YP_004596433.1| - 1.3e-20 73.9 0.0 2.8e-20 72.8 0.0 1.5 1 1 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.3 gi|336253326|ref|YP_004596433.1| - 2.3e-07 30.5 0.3 5.8e-07 29.2 0.2 1.7 1 0 0 1 1 1 1 Putative lysophospholipase Abhydrolase_4 PF08386.5 gi|336253326|ref|YP_004596433.1| - 1e-06 28.5 0.0 5.1e-06 26.3 0.0 2.0 2 0 0 2 2 2 1 TAP-like protein Peptidase_S9 PF00326.16 gi|336253326|ref|YP_004596433.1| - 0.00013 21.2 0.3 0.00053 19.2 0.0 2.0 3 1 0 3 3 3 1 Prolyl oligopeptidase family Peptidase_S15 PF02129.13 gi|336253326|ref|YP_004596433.1| - 0.0044 16.4 0.2 0.013 14.9 0.1 1.7 1 1 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) NTS_2 PF15448.1 gi|336253326|ref|YP_004596433.1| - 0.071 13.4 0.7 0.24 11.7 0.3 2.0 2 0 0 2 2 2 0 N-terminal segments of P. falciparum erythrocyte membrane protein PspA_IM30 PF04012.7 gi|336253327|ref|YP_004596434.1| - 5.4e-35 120.7 32.1 5.4e-35 120.7 22.3 2.1 2 0 0 2 2 2 1 PspA/IM30 family ERM PF00769.14 gi|336253327|ref|YP_004596434.1| - 0.0011 18.5 40.5 0.0011 18.5 28.1 2.0 1 1 1 2 2 2 1 Ezrin/radixin/moesin family Cut8_C PF08559.5 gi|336253327|ref|YP_004596434.1| - 0.06 13.1 2.0 0.18 11.5 0.0 2.5 1 1 2 3 3 3 0 Cut8 six-helix bundle DUF972 PF06156.8 gi|336253327|ref|YP_004596434.1| - 0.096 13.0 30.8 0.91 9.9 5.4 3.6 1 1 2 3 3 3 0 Protein of unknown function (DUF972) DUF3584 PF12128.3 gi|336253327|ref|YP_004596434.1| - 0.15 9.3 46.4 0.046 11.0 22.4 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3584) Snf7 PF03357.16 gi|336253327|ref|YP_004596434.1| - 0.15 11.4 60.1 0.049 13.0 27.8 4.0 2 1 0 3 3 3 0 Snf7 DUF2217 PF10265.4 gi|336253327|ref|YP_004596434.1| - 0.18 10.5 16.6 0.2 10.3 11.5 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2217) Spc7 PF08317.6 gi|336253327|ref|YP_004596434.1| - 0.42 9.2 33.0 0.016 13.8 16.2 2.4 1 1 2 3 3 3 0 Spc7 kinetochore protein Baculo_PEP_C PF04513.7 gi|336253327|ref|YP_004596434.1| - 0.44 10.3 11.3 2.8 7.7 5.1 3.1 1 1 2 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF948 PF06103.6 gi|336253327|ref|YP_004596434.1| - 0.63 9.9 12.8 3.2 7.6 2.8 3.5 1 1 3 4 4 4 0 Bacterial protein of unknown function (DUF948) SPAM PF02090.10 gi|336253327|ref|YP_004596434.1| - 0.73 9.8 18.5 2.5 8.1 6.0 2.8 1 1 1 2 2 2 0 Salmonella surface presentation of antigen gene type M protein Not3 PF04065.10 gi|336253327|ref|YP_004596434.1| - 1.4 8.1 31.4 1.4 8.1 9.1 2.2 1 1 1 2 2 2 0 Not1 N-terminal domain, CCR4-Not complex component Dor1 PF04124.7 gi|336253327|ref|YP_004596434.1| - 1.6 7.1 19.6 7.4 4.9 11.6 2.3 1 1 1 2 2 2 0 Dor1-like family STAT_alpha PF01017.15 gi|336253327|ref|YP_004596434.1| - 2.7 7.6 24.7 0.15 11.7 0.9 3.3 2 1 1 4 4 4 0 STAT protein, all-alpha domain NABP PF07990.7 gi|336253327|ref|YP_004596434.1| - 5.7 6.1 7.9 4.8 6.3 4.8 1.3 1 1 0 1 1 1 0 Nucleic acid binding protein NABP AAA_13 PF13166.1 gi|336253327|ref|YP_004596434.1| - 7.4 4.8 30.7 0.73 8.2 17.2 1.8 1 1 1 2 2 2 0 AAA domain Bestrophin PF01062.16 gi|336253327|ref|YP_004596434.1| - 9.2 5.1 6.9 24 3.7 4.7 1.7 1 1 1 2 2 2 0 Bestrophin, RFP-TM, chloride channel DUF3426 PF11906.3 gi|336253328|ref|YP_004596435.1| - 0.016 14.8 0.0 0.023 14.3 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3426) DUF2393 PF09624.5 gi|336253328|ref|YP_004596435.1| - 0.016 14.7 0.0 0.028 13.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2393) UCR_Fe-S_N PF10399.4 gi|336253328|ref|YP_004596435.1| - 0.041 13.0 2.5 0.075 12.2 1.7 1.4 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal TAT_signal PF10518.4 gi|336253328|ref|YP_004596435.1| - 0.44 10.6 10.1 0.36 10.9 5.2 2.0 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence DUF4013 PF13197.1 gi|336253329|ref|YP_004596436.1| - 0.011 15.0 11.4 0.039 13.2 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4013) DUF2207 PF09972.4 gi|336253329|ref|YP_004596436.1| - 0.27 9.7 1.8 0.41 9.1 0.0 2.0 2 1 0 2 2 2 0 Predicted membrane protein (DUF2207) E1-E2_ATPase PF00122.15 gi|336253329|ref|YP_004596436.1| - 0.49 9.3 5.1 0.069 12.1 0.4 1.8 2 0 0 2 2 2 0 E1-E2 ATPase OppC_N PF12911.2 gi|336253329|ref|YP_004596436.1| - 9.6 5.6 6.6 1.5 8.2 0.5 2.5 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C YtxH PF12732.2 gi|336253332|ref|YP_004596439.1| - 0.03 14.7 0.0 0.22 11.9 0.0 2.5 1 1 1 2 2 2 0 YtxH-like protein DUF327 PF03885.8 gi|336253332|ref|YP_004596439.1| - 0.069 12.9 0.0 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF327) RskA PF10099.4 gi|336253333|ref|YP_004596440.1| - 5 6.8 8.4 0.42 10.3 0.4 2.4 2 0 0 2 2 2 0 Anti-sigma-K factor rskA Hemerythrin PF01814.18 gi|336253334|ref|YP_004596441.1| - 3.9e-20 72.3 15.4 3.9e-20 72.3 10.7 1.9 1 1 1 2 2 2 1 Hemerythrin HHE cation binding domain ScdA_N PF04405.9 gi|336253334|ref|YP_004596441.1| - 1.6e-19 68.9 0.1 3.6e-19 67.8 0.1 1.6 1 0 0 1 1 1 1 Domain of Unknown function (DUF542) Cep57_MT_bd PF06657.8 gi|336253334|ref|YP_004596441.1| - 0.0076 16.1 2.3 0.021 14.7 0.2 2.4 2 0 0 2 2 2 1 Centrosome microtubule-binding domain of Cep57 HSBP1 PF06825.7 gi|336253334|ref|YP_004596441.1| - 0.026 14.0 0.0 0.53 9.9 0.0 2.7 3 1 0 3 3 3 0 Heat shock factor binding protein 1 EzrA PF06160.7 gi|336253334|ref|YP_004596441.1| - 0.03 12.5 1.1 0.38 8.8 0.1 2.0 1 1 1 2 2 2 0 Septation ring formation regulator, EzrA DUF342 PF03961.8 gi|336253334|ref|YP_004596441.1| - 0.11 10.8 0.1 0.15 10.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF342) Vac_Fusion PF02346.11 gi|336253334|ref|YP_004596441.1| - 0.2 11.1 1.4 1.1 8.7 0.0 2.8 3 2 1 4 4 4 0 Chordopoxvirus fusion protein CorA PF01544.13 gi|336253334|ref|YP_004596441.1| - 1.4 7.8 3.7 1.1 8.2 0.6 1.8 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein Cupin_2 PF07883.6 gi|336253335|ref|YP_004596442.1| - 8.5e-12 44.4 0.1 1e-11 44.1 0.0 1.1 1 0 0 1 1 1 1 Cupin domain Cupin_3 PF05899.7 gi|336253335|ref|YP_004596442.1| - 0.00061 19.1 0.1 0.0016 17.7 0.0 1.8 1 1 0 1 1 1 1 Protein of unknown function (DUF861) DUF1255 PF06865.6 gi|336253335|ref|YP_004596442.1| - 0.0048 17.1 0.0 0.0068 16.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1255) Methyltransf_33 PF10017.4 gi|336253335|ref|YP_004596442.1| - 0.074 12.9 0.0 0.098 12.5 0.0 1.2 1 0 0 1 1 1 0 Histidine-specific methyltransferase, SAM-dependent cNMP_binding PF00027.24 gi|336253335|ref|YP_004596442.1| - 0.077 12.8 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 Cyclic nucleotide-binding domain Pirin_C PF05726.8 gi|336253335|ref|YP_004596442.1| - 0.086 12.9 0.0 0.11 12.5 0.0 1.2 1 0 0 1 1 1 0 Pirin C-terminal cupin domain Na_H_Exchanger PF00999.16 gi|336253336|ref|YP_004596443.1| - 0.024 13.1 8.0 0.027 12.9 5.6 1.2 1 0 0 1 1 1 0 Sodium/hydrogen exchanger family DUF308 PF03729.8 gi|336253336|ref|YP_004596443.1| - 0.027 14.4 2.6 0.027 14.4 1.8 2.4 1 1 1 2 2 2 0 Short repeat of unknown function (DUF308) DUF373 PF04123.8 gi|336253336|ref|YP_004596443.1| - 0.28 10.1 2.6 0.35 9.8 1.8 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF373) YtpI PF14007.1 gi|336253336|ref|YP_004596443.1| - 0.39 10.6 0.1 0.39 10.6 0.1 2.1 2 1 0 2 2 2 0 YtpI-like protein DUF3353 PF11833.3 gi|336253336|ref|YP_004596443.1| - 1 8.7 4.4 1.2 8.5 3.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3353) zf-CDGSH PF09360.5 gi|336253337|ref|YP_004596444.1| - 3.1e-11 42.9 0.4 6.3e-11 41.9 0.3 1.5 1 0 0 1 1 1 1 Iron-binding zinc finger CDGSH type E1-E2_ATPase PF00122.15 gi|336253338|ref|YP_004596445.1| - 7.5e-44 149.4 2.0 1.2e-43 148.8 1.4 1.3 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.21 gi|336253338|ref|YP_004596445.1| - 6e-34 118.3 9.9 6e-34 118.3 6.9 2.9 2 2 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|336253338|ref|YP_004596445.1| - 1e-09 38.8 0.9 9.1e-09 35.7 0.1 2.5 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|336253338|ref|YP_004596445.1| - 5.4e-07 29.6 0.0 2.6e-06 27.4 0.0 2.2 2 0 0 2 2 2 1 Heavy-metal-associated domain Hydrolase_3 PF08282.7 gi|336253338|ref|YP_004596445.1| - 1.7e-05 24.5 1.2 3.9e-05 23.3 0.8 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase ATPase-cat_bd PF12156.3 gi|336253338|ref|YP_004596445.1| - 0.0013 19.1 0.3 0.0029 18.0 0.2 1.5 1 0 0 1 1 1 1 Putative metal-binding domain of cation transport ATPase DUF2142 PF09913.4 gi|336253339|ref|YP_004596446.1| - 0.036 12.7 0.2 0.041 12.5 0.1 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2142) CreD PF06123.7 gi|336253339|ref|YP_004596446.1| - 0.1 11.1 0.5 0.11 10.9 0.3 1.0 1 0 0 1 1 1 0 Inner membrane protein CreD DUF912 PF06024.7 gi|336253340|ref|YP_004596447.1| - 0.084 12.9 0.0 0.098 12.7 0.0 1.2 1 0 0 1 1 1 0 Nucleopolyhedrovirus protein of unknown function (DUF912) SPC25 PF06703.6 gi|336253340|ref|YP_004596447.1| - 0.1 12.1 0.2 0.14 11.7 0.1 1.1 1 0 0 1 1 1 0 Microsomal signal peptidase 25 kDa subunit (SPC25) COX2 PF00116.15 gi|336253341|ref|YP_004596448.1| - 2.1e-25 88.8 0.8 3.9e-25 88.0 0.1 1.7 2 0 0 2 2 2 1 Cytochrome C oxidase subunit II, periplasmic domain Cupredoxin_1 PF13473.1 gi|336253341|ref|YP_004596448.1| - 2.7e-09 36.8 0.2 1.2e-08 34.7 0.0 2.0 2 1 1 3 3 3 1 Cupredoxin-like domain COX2-transmemb PF09125.5 gi|336253341|ref|YP_004596448.1| - 0.085 12.4 0.6 0.14 11.6 0.4 1.3 1 0 0 1 1 1 0 Cytochrome C oxidase subunit II, transmembrane COX1 PF00115.15 gi|336253342|ref|YP_004596449.1| - 9.8e-72 241.9 56.7 9.8e-72 241.9 39.3 2.1 1 1 1 2 2 2 2 Cytochrome C and Quinol oxidase polypeptide I Vps55 PF04133.9 gi|336253343|ref|YP_004596450.1| - 0.037 13.7 1.8 0.045 13.5 1.2 1.1 1 0 0 1 1 1 0 Vacuolar protein sorting 55 FixQ PF05545.6 gi|336253343|ref|YP_004596450.1| - 0.11 12.1 0.0 0.11 12.1 0.0 1.7 2 0 0 2 2 2 0 Cbb3-type cytochrome oxidase component FixQ OppC_N PF12911.2 gi|336253343|ref|YP_004596450.1| - 0.12 11.7 1.7 3.9 6.9 0.0 2.1 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C Vpu PF00558.14 gi|336253343|ref|YP_004596450.1| - 8.7 5.9 5.7 1.2 8.7 0.7 1.9 2 0 0 2 2 2 0 Vpu protein DUF883 PF05957.8 gi|336253344|ref|YP_004596451.1| - 0.00073 19.8 2.3 0.0011 19.3 1.6 1.4 1 1 0 1 1 1 1 Bacterial protein of unknown function (DUF883) LRS4 PF10422.4 gi|336253345|ref|YP_004596452.1| - 0.012 15.0 0.4 0.016 14.5 0.3 1.1 1 0 0 1 1 1 0 Monopolin complex subunit LRS4 DUF4637 PF15470.1 gi|336253346|ref|YP_004596453.1| - 3 7.4 8.6 5.6 6.5 2.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4637) E1-E2_ATPase PF00122.15 gi|336253348|ref|YP_004596455.1| - 7e-41 139.7 0.5 1.6e-40 138.5 0.3 1.6 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.21 gi|336253348|ref|YP_004596455.1| - 7.6e-29 101.6 3.5 7.6e-29 101.6 2.5 2.1 3 0 0 3 3 3 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|336253348|ref|YP_004596455.1| - 3.3e-10 40.4 0.0 1.2e-09 38.5 0.0 2.1 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|336253348|ref|YP_004596455.1| - 5.9e-07 29.5 0.1 6.5e-05 22.9 0.0 3.6 4 0 0 4 4 4 1 Heavy-metal-associated domain Hydrolase_3 PF08282.7 gi|336253348|ref|YP_004596455.1| - 5.4e-05 22.9 0.1 9.7e-05 22.0 0.1 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase ATPase-cat_bd PF12156.3 gi|336253348|ref|YP_004596455.1| - 0.0056 17.1 0.1 0.01 16.3 0.1 1.4 1 0 0 1 1 1 1 Putative metal-binding domain of cation transport ATPase RseC_MucC PF04246.7 gi|336253348|ref|YP_004596455.1| - 1.3 8.5 4.5 2.2 7.8 1.9 2.3 2 0 0 2 2 2 0 Positive regulator of sigma(E), RseC/MucC COX3 PF00510.13 gi|336253349|ref|YP_004596456.1| - 5.1e-36 124.4 15.1 1e-35 123.4 10.5 1.5 1 1 0 1 1 1 1 Cytochrome c oxidase subunit III DUF420 PF04238.7 gi|336253349|ref|YP_004596456.1| - 0.23 11.4 9.2 0.51 10.2 6.4 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF420) DUF4129 PF13559.1 gi|336253350|ref|YP_004596457.1| - 0.027 14.4 1.6 0.045 13.7 1.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4129) DUF2976 PF11190.3 gi|336253350|ref|YP_004596457.1| - 0.42 10.1 9.1 0.03 13.8 1.3 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2976) DUF1212 PF06738.7 gi|336253350|ref|YP_004596457.1| - 4.3 6.7 12.8 6.5 6.1 8.7 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1212) ABC2_membrane_3 PF12698.2 gi|336253351|ref|YP_004596458.1| - 4.4 6.2 7.3 5.5 5.9 5.1 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein COX1 PF00115.15 gi|336253353|ref|YP_004596460.1| - 1.8e-147 491.6 51.5 2.3e-147 491.2 35.7 1.1 1 0 0 1 1 1 1 Cytochrome C and Quinol oxidase polypeptide I DUF2938 PF11158.3 gi|336253354|ref|YP_004596461.1| - 6 6.2 8.7 0.66 9.3 0.1 2.7 1 1 1 2 2 2 0 Protein of unknown function (DUF2938) COX2 PF00116.15 gi|336253355|ref|YP_004596462.1| - 2.8e-19 69.1 0.0 4.1e-18 65.3 0.0 2.1 1 1 0 1 1 1 1 Cytochrome C oxidase subunit II, periplasmic domain COX2_TM PF02790.10 gi|336253355|ref|YP_004596462.1| - 1.1e-07 31.6 0.0 1.8e-07 30.9 0.0 1.3 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, transmembrane domain DUF2562 PF10814.3 gi|336253355|ref|YP_004596462.1| - 0.034 14.0 2.0 0.041 13.8 0.7 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF2562) DUF2079 PF09852.4 gi|336253355|ref|YP_004596462.1| - 0.04 12.6 0.2 0.05 12.3 0.1 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2079) DUF373 PF04123.8 gi|336253355|ref|YP_004596462.1| - 0.045 12.7 0.5 0.061 12.3 0.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF373) DUF4010 PF13194.1 gi|336253355|ref|YP_004596462.1| - 0.049 12.9 3.2 0.076 12.2 2.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4010) AA_permease_2 PF13520.1 gi|336253355|ref|YP_004596462.1| - 0.054 12.0 0.3 0.11 10.9 0.2 1.4 1 1 0 1 1 1 0 Amino acid permease Cyto_ox_2 PF02322.10 gi|336253355|ref|YP_004596462.1| - 0.088 11.9 1.2 0.11 11.6 0.9 1.1 1 0 0 1 1 1 0 Cytochrome oxidase subunit II Cupredoxin_1 PF13473.1 gi|336253355|ref|YP_004596462.1| - 0.089 12.6 0.0 0.19 11.6 0.0 1.5 1 0 0 1 1 1 0 Cupredoxin-like domain DUF805 PF05656.9 gi|336253355|ref|YP_004596462.1| - 0.4 10.5 2.7 0.79 9.5 1.9 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF805) TrbC PF04956.8 gi|336253355|ref|YP_004596462.1| - 0.42 10.6 6.6 0.99 9.4 4.1 1.8 1 1 1 2 2 2 0 TrbC/VIRB2 family Form_Nir_trans PF01226.12 gi|336253358|ref|YP_004596465.1| - 5.2e-54 182.7 19.5 6e-54 182.5 13.5 1.0 1 0 0 1 1 1 1 Formate/nitrite transporter UPF0233 PF06781.7 gi|336253358|ref|YP_004596465.1| - 7.2 6.3 8.2 0.4 10.3 0.3 2.8 3 1 0 3 3 3 0 Uncharacterised protein family (UPF0233) OsmC PF02566.14 gi|336253359|ref|YP_004596466.1| - 2.8e-23 81.9 0.1 1e-22 80.1 0.0 1.7 2 0 0 2 2 2 1 OsmC-like protein Pyr_redox_2 PF07992.9 gi|336253360|ref|YP_004596467.1| - 2e-33 115.9 0.1 3.2e-33 115.3 0.1 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|336253360|ref|YP_004596467.1| - 6.3e-23 80.9 0.1 1e-22 80.2 0.1 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.22 gi|336253360|ref|YP_004596467.1| - 1.4e-19 70.2 0.3 7.9e-15 55.0 0.0 2.7 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|336253360|ref|YP_004596467.1| - 1.4e-06 28.4 0.1 8.3e-06 26.0 0.0 2.0 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase K_oxygenase PF13434.1 gi|336253360|ref|YP_004596467.1| - 0.0009 18.2 0.0 0.003 16.5 0.0 1.8 2 0 0 2 2 2 1 L-lysine 6-monooxygenase (NADPH-requiring) FAD_binding_2 PF00890.19 gi|336253360|ref|YP_004596467.1| - 0.011 14.6 4.8 0.012 14.4 0.8 2.4 2 1 0 2 2 2 0 FAD binding domain 3HCDH_N PF02737.13 gi|336253360|ref|YP_004596467.1| - 0.026 14.1 0.4 2.4 7.7 0.0 2.7 3 0 0 3 3 3 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain XdhC_C PF13478.1 gi|336253360|ref|YP_004596467.1| - 0.052 13.8 0.0 0.14 12.4 0.0 1.8 1 0 0 1 1 1 0 XdhC Rossmann domain DAO PF01266.19 gi|336253360|ref|YP_004596467.1| - 0.072 11.9 0.1 0.072 11.9 0.1 2.8 3 0 0 3 3 3 0 FAD dependent oxidoreductase DrsE PF02635.10 gi|336253361|ref|YP_004596468.1| - 5.8e-06 26.3 0.1 6.7e-06 26.1 0.0 1.1 1 0 0 1 1 1 1 DsrE/DsrF-like family Molybdop_Fe4S4 PF04879.11 gi|336253361|ref|YP_004596468.1| - 0.093 12.5 0.0 0.15 11.9 0.0 1.3 1 0 0 1 1 1 0 Molybdopterin oxidoreductase Fe4S4 domain Glyco_hydro_15 PF00723.16 gi|336253362|ref|YP_004596469.1| - 1.7e-49 168.5 0.0 1e-44 152.9 0.0 2.0 1 1 1 2 2 2 2 Glycosyl hydrolases family 15 TPR_4 PF07721.9 gi|336253362|ref|YP_004596469.1| - 0.57 10.7 7.9 0.27 11.7 0.2 3.6 3 0 0 3 3 3 0 Tetratricopeptide repeat Abhydrolase_6 PF12697.2 gi|336253363|ref|YP_004596470.1| - 1.1e-38 133.3 1.0 1.4e-38 133.0 0.7 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|336253363|ref|YP_004596470.1| - 9.5e-23 80.9 0.0 1.4e-22 80.4 0.0 1.2 1 0 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|336253363|ref|YP_004596470.1| - 4.4e-18 65.4 0.0 2e-17 63.3 0.0 1.9 1 1 0 1 1 1 1 Alpha/beta hydrolase family Ndr PF03096.9 gi|336253363|ref|YP_004596470.1| - 8e-05 21.2 0.0 0.00012 20.6 0.0 1.2 1 0 0 1 1 1 1 Ndr family Hydrolase_4 PF12146.3 gi|336253363|ref|YP_004596470.1| - 0.029 14.1 0.0 0.068 13.0 0.0 1.6 1 0 0 1 1 1 0 Putative lysophospholipase Abhydrolase_4 PF08386.5 gi|336253363|ref|YP_004596470.1| - 0.04 13.7 0.0 0.097 12.5 0.0 1.7 2 0 0 2 2 2 0 TAP-like protein DLH PF01738.13 gi|336253363|ref|YP_004596470.1| - 0.081 12.1 0.0 2.7 7.2 0.0 2.2 2 0 0 2 2 2 0 Dienelactone hydrolase family Orn_Arg_deC_N PF02784.11 gi|336253363|ref|YP_004596470.1| - 0.12 11.5 0.0 0.36 9.9 0.0 1.7 2 0 0 2 2 2 0 Pyridoxal-dependent decarboxylase, pyridoxal binding domain TrmB PF01978.14 gi|336253364|ref|YP_004596471.1| - 3.8e-07 29.7 0.0 5.2e-07 29.2 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|336253364|ref|YP_004596471.1| - 6.2e-07 28.7 0.0 9.1e-07 28.1 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|336253364|ref|YP_004596471.1| - 9.5e-07 28.4 0.2 1.3e-06 27.9 0.2 1.2 1 0 0 1 1 1 1 MarR family TFIIE_alpha PF02002.12 gi|336253364|ref|YP_004596471.1| - 2.9e-06 26.7 0.0 3.5e-06 26.4 0.0 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_27 PF13463.1 gi|336253364|ref|YP_004596471.1| - 6.9e-06 26.3 0.0 8e-06 26.0 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain PaaX PF07848.7 gi|336253364|ref|YP_004596471.1| - 3.1e-05 23.8 0.1 3.9e-05 23.5 0.1 1.2 1 0 0 1 1 1 1 PaaX-like protein HTH_20 PF12840.2 gi|336253364|ref|YP_004596471.1| - 4.1e-05 23.3 0.1 7.7e-05 22.4 0.0 1.5 2 0 0 2 2 2 1 Helix-turn-helix domain GntR PF00392.16 gi|336253364|ref|YP_004596471.1| - 8.3e-05 21.9 0.2 0.00011 21.5 0.1 1.2 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family Rrf2 PF02082.15 gi|336253364|ref|YP_004596471.1| - 0.00027 20.9 0.0 0.0004 20.4 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR PF03551.9 gi|336253364|ref|YP_004596471.1| - 0.00036 20.2 0.0 0.00073 19.2 0.0 1.5 1 1 1 2 2 2 1 Transcriptional regulator PadR-like family HTH_23 PF13384.1 gi|336253364|ref|YP_004596471.1| - 0.00064 19.2 0.0 0.0012 18.3 0.0 1.5 2 0 0 2 2 2 1 Homeodomain-like domain HTH_28 PF13518.1 gi|336253364|ref|YP_004596471.1| - 0.0016 18.3 0.0 0.0033 17.3 0.0 1.5 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|336253364|ref|YP_004596471.1| - 0.0021 17.6 0.2 0.0033 16.9 0.2 1.4 1 1 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|336253364|ref|YP_004596471.1| - 0.0026 17.3 0.0 0.0036 16.9 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.7 gi|336253364|ref|YP_004596471.1| - 0.0037 16.8 0.0 0.0054 16.3 0.0 1.2 1 0 0 1 1 1 1 HTH domain Sigma70_r4_2 PF08281.7 gi|336253364|ref|YP_004596471.1| - 0.0046 16.3 0.0 0.0058 16.0 0.0 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_Crp_2 PF13545.1 gi|336253364|ref|YP_004596471.1| - 0.0052 16.5 0.0 0.0063 16.2 0.0 1.1 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_43 PF09904.4 gi|336253364|ref|YP_004596471.1| - 0.0055 16.4 0.0 0.0063 16.2 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn helix HTH_AsnC-type PF13404.1 gi|336253364|ref|YP_004596471.1| - 0.0055 16.2 0.3 0.014 14.9 0.1 1.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain Sigma70_r4 PF04545.11 gi|336253364|ref|YP_004596471.1| - 0.0071 15.6 0.0 0.014 14.6 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_CodY PF08222.6 gi|336253364|ref|YP_004596471.1| - 0.0082 15.4 0.0 0.011 15.0 0.0 1.1 1 0 0 1 1 1 1 CodY helix-turn-helix domain Replic_Relax PF13814.1 gi|336253364|ref|YP_004596471.1| - 0.017 14.9 0.1 0.019 14.8 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation HxlR PF01638.12 gi|336253364|ref|YP_004596471.1| - 0.018 14.6 0.0 0.021 14.4 0.0 1.1 1 0 0 1 1 1 0 HxlR-like helix-turn-helix DUF2250 PF10007.4 gi|336253364|ref|YP_004596471.1| - 0.023 14.5 0.0 0.052 13.4 0.0 1.6 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) MarR PF01047.17 gi|336253364|ref|YP_004596471.1| - 0.029 14.0 0.0 0.033 13.8 0.0 1.2 1 0 0 1 1 1 0 MarR family HTH_29 PF13551.1 gi|336253364|ref|YP_004596471.1| - 0.029 14.5 0.0 0.034 14.2 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn helix HTH_9 PF08221.6 gi|336253364|ref|YP_004596471.1| - 0.03 14.2 0.0 0.049 13.5 0.0 1.4 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain Mrr_N PF14338.1 gi|336253364|ref|YP_004596471.1| - 0.03 14.4 0.0 0.11 12.5 0.0 1.8 1 1 0 1 1 1 0 Mrr N-terminal domain HTH_Mga PF08280.6 gi|336253364|ref|YP_004596471.1| - 0.036 13.8 0.0 0.043 13.5 0.0 1.1 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_36 PF13730.1 gi|336253364|ref|YP_004596471.1| - 0.043 13.9 0.0 0.097 12.8 0.0 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_42 PF06224.7 gi|336253364|ref|YP_004596471.1| - 0.055 12.7 0.8 0.062 12.6 0.6 1.1 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_34 PF13601.1 gi|336253364|ref|YP_004596471.1| - 0.063 13.3 0.0 0.079 12.9 0.0 1.1 1 0 0 1 1 1 0 Winged helix DNA-binding domain Sigma70_r3 PF04539.11 gi|336253364|ref|YP_004596471.1| - 0.071 13.0 0.1 0.095 12.5 0.0 1.2 1 0 0 1 1 1 0 Sigma-70 region 3 Fe_dep_repress PF01325.14 gi|336253364|ref|YP_004596471.1| - 0.095 12.6 0.0 0.22 11.4 0.0 1.6 2 0 0 2 2 1 0 Iron dependent repressor, N-terminal DNA binding domain Cdc6_C PF09079.6 gi|336253364|ref|YP_004596471.1| - 0.11 12.2 0.0 0.14 11.8 0.0 1.2 1 0 0 1 1 1 0 CDC6, C terminal HTH_45 PF14947.1 gi|336253364|ref|YP_004596471.1| - 0.15 11.9 0.0 0.17 11.6 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn-helix DUF1028 PF06267.7 gi|336253365|ref|YP_004596472.1| - 9.2e-48 162.1 0.1 1.1e-47 161.9 0.0 1.1 1 0 0 1 1 1 1 Family of unknown function (DUF1028) DUF552 PF04472.7 gi|336253366|ref|YP_004596473.1| - 7.2e-19 67.4 3.5 9e-19 67.1 2.0 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF552) DUF2088 PF09861.4 gi|336253366|ref|YP_004596473.1| - 0.031 13.3 0.3 0.037 13.0 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF2088) MdcE PF06833.6 gi|336253367|ref|YP_004596474.1| - 0.2 10.8 1.0 0.31 10.1 0.7 1.3 1 0 0 1 1 1 0 Malonate decarboxylase gamma subunit (MdcE) NIR_SIR PF01077.17 gi|336253368|ref|YP_004596475.1| - 2.2e-42 144.1 0.0 1.2e-32 112.4 0.0 2.3 2 0 0 2 2 2 2 Nitrite and sulphite reductase 4Fe-4S domain Rhodanese PF00581.15 gi|336253368|ref|YP_004596475.1| - 1.7e-36 125.0 0.0 1.6e-18 67.0 0.0 2.4 2 0 0 2 2 2 2 Rhodanese-like domain NIR_SIR_ferr PF03460.12 gi|336253368|ref|YP_004596475.1| - 2.5e-32 110.2 4.7 9.4e-15 53.9 0.2 4.4 4 1 0 4 4 4 2 Nitrite/Sulfite reductase ferredoxin-like half domain FrhB_FdhB_C PF04432.8 gi|336253369|ref|YP_004596476.1| - 9.4e-32 109.6 0.0 9.4e-32 109.6 0.0 2.1 2 1 0 2 2 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.8 gi|336253369|ref|YP_004596476.1| - 4.5e-20 71.2 0.2 1e-19 70.1 0.2 1.6 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_21 PF14697.1 gi|336253369|ref|YP_004596476.1| - 7.7e-10 38.4 8.7 1.8e-09 37.3 6.0 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|336253369|ref|YP_004596476.1| - 4.4e-08 32.7 12.7 2.1e-06 27.4 9.1 2.9 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|336253369|ref|YP_004596476.1| - 1.5e-07 31.5 11.0 1.8e-07 31.3 6.3 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|336253369|ref|YP_004596476.1| - 4e-07 30.3 13.4 6.3e-07 29.6 8.0 2.3 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|336253369|ref|YP_004596476.1| - 1.9e-06 27.1 18.2 8.9e-05 21.9 2.7 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|336253369|ref|YP_004596476.1| - 8.4e-06 25.7 19.6 0.0042 17.3 3.5 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|336253369|ref|YP_004596476.1| - 2.1e-05 25.2 8.8 0.01 16.5 1.4 3.1 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|336253369|ref|YP_004596476.1| - 2.8e-05 23.7 19.0 0.00036 20.2 3.0 2.8 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|336253369|ref|YP_004596476.1| - 0.00021 21.2 11.4 0.003 17.5 8.6 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|336253369|ref|YP_004596476.1| - 0.00025 21.3 9.3 0.042 14.1 1.6 2.7 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|336253369|ref|YP_004596476.1| - 0.00072 19.3 4.4 0.00072 19.3 3.0 3.1 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_13 PF13370.1 gi|336253369|ref|YP_004596476.1| - 0.0044 17.3 10.6 0.28 11.6 2.9 2.9 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_18 PF13746.1 gi|336253369|ref|YP_004596476.1| - 0.54 10.7 21.5 0.074 13.4 2.1 2.7 2 1 1 3 3 2 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|336253369|ref|YP_004596476.1| - 1.4 9.5 18.0 0.12 12.9 2.0 3.4 2 2 1 3 3 3 0 4Fe-4S single cluster domain Fer4_20 PF14691.1 gi|336253369|ref|YP_004596476.1| - 2.1 8.0 8.9 0.11 12.1 2.1 1.7 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_3 PF12798.2 gi|336253369|ref|YP_004596476.1| - 4 8.2 20.8 0.094 13.3 3.2 3.1 3 0 0 3 3 3 0 4Fe-4S binding domain HTH_10 PF04967.7 gi|336253370|ref|YP_004596477.1| - 1.2e-20 72.8 0.1 2e-20 72.0 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_5 PF01022.15 gi|336253370|ref|YP_004596477.1| - 0.0044 16.6 0.0 0.17 11.5 0.0 2.3 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family GerE PF00196.14 gi|336253370|ref|YP_004596477.1| - 0.0045 16.2 0.2 0.041 13.2 0.1 2.1 1 1 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4 PF04545.11 gi|336253370|ref|YP_004596477.1| - 0.015 14.5 0.1 0.11 11.7 0.0 2.4 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_IclR PF09339.5 gi|336253370|ref|YP_004596477.1| - 0.016 14.8 0.0 1.4 8.5 0.0 2.4 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|336253370|ref|YP_004596477.1| - 0.033 14.0 0.0 0.094 12.5 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.1 gi|336253370|ref|YP_004596477.1| - 0.098 12.3 0.0 0.29 10.8 0.0 1.8 2 0 0 2 2 2 0 Homeodomain-like domain HTH_22 PF13309.1 gi|336253370|ref|YP_004596477.1| - 0.1 12.3 0.0 0.25 11.1 0.0 1.7 1 0 0 1 1 1 0 HTH domain Citrate_synt PF00285.16 gi|336253371|ref|YP_004596478.1| - 2e-134 447.8 0.0 2.3e-134 447.6 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase SusD PF07980.6 gi|336253371|ref|YP_004596478.1| - 0.037 13.5 0.0 0.053 13.0 0.0 1.2 1 0 0 1 1 1 0 SusD family DUF1980 PF09323.5 gi|336253372|ref|YP_004596479.1| - 0.012 15.3 0.7 0.016 14.9 0.0 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF1980) Colicin_V PF02674.11 gi|336253372|ref|YP_004596479.1| - 0.066 13.0 0.3 0.077 12.8 0.2 1.1 1 0 0 1 1 1 0 Colicin V production protein CARDB PF07705.6 gi|336253373|ref|YP_004596480.1| - 0.016 15.2 0.9 0.42 10.7 0.1 2.4 2 1 0 2 2 2 0 CARDB Glyco_hydro_2 PF00703.16 gi|336253373|ref|YP_004596480.1| - 0.02 15.3 1.0 1.3 9.5 0.1 2.4 2 0 0 2 2 2 0 Glycosyl hydrolases family 2 AIG2 PF06094.7 gi|336253374|ref|YP_004596481.1| - 3.4e-14 53.1 0.0 4.8e-14 52.6 0.0 1.2 1 0 0 1 1 1 1 AIG2-like family AIG2_2 PF13772.1 gi|336253374|ref|YP_004596481.1| - 2e-05 24.6 0.0 3.1e-05 24.0 0.0 1.3 1 0 0 1 1 1 1 AIG2-like family PALP PF00291.20 gi|336253375|ref|YP_004596482.1| - 1.1e-76 258.0 6.9 1.3e-76 257.7 4.8 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACT_4 PF13291.1 gi|336253375|ref|YP_004596482.1| - 0.0065 16.7 0.0 0.04 14.2 0.0 2.3 2 0 0 2 2 2 1 ACT domain ACT PF01842.20 gi|336253375|ref|YP_004596482.1| - 0.0085 15.5 0.0 0.03 13.8 0.0 1.9 1 0 0 1 1 1 1 ACT domain YhfZ_C PF14503.1 gi|336253375|ref|YP_004596482.1| - 0.034 13.5 0.0 0.057 12.7 0.0 1.3 1 0 0 1 1 1 0 YhfZ C-terminal domain P22_CoatProtein PF11651.3 gi|336253375|ref|YP_004596482.1| - 0.034 12.7 0.2 0.047 12.3 0.2 1.2 1 0 0 1 1 1 0 P22 coat protein - gene protein 5 Pep_deformylase PF01327.16 gi|336253375|ref|YP_004596482.1| - 0.17 11.2 1.3 1.5 8.2 0.0 2.4 1 1 1 2 2 2 0 Polypeptide deformylase Ribonuc_L-PSP PF01042.16 gi|336253376|ref|YP_004596483.1| - 2.7e-39 133.6 0.0 3e-39 133.5 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP YjgF_endoribonc PF14588.1 gi|336253376|ref|YP_004596483.1| - 0.045 13.6 0.1 0.072 13.0 0.1 1.5 1 1 0 1 1 1 0 YjgF/chorismate_mutase-like, putative endoribonuclease DUF2721 PF11026.3 gi|336253377|ref|YP_004596484.1| - 0.015 14.9 1.5 0.02 14.5 1.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2721) Phage_holin_2 PF04550.7 gi|336253377|ref|YP_004596484.1| - 0.07 13.2 2.3 0.086 12.9 1.6 1.2 1 0 0 1 1 1 0 Phage holin family 2 adh_short_C2 PF13561.1 gi|336253378|ref|YP_004596485.1| - 3.1e-24 86.0 0.0 3.7e-24 85.8 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|336253378|ref|YP_004596485.1| - 2.4e-18 66.6 1.1 3.7e-18 66.0 0.7 1.3 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|336253378|ref|YP_004596485.1| - 2.1e-10 40.5 0.2 2.9e-10 40.1 0.1 1.2 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.1 gi|336253378|ref|YP_004596485.1| - 0.0067 16.4 0.2 0.011 15.7 0.1 1.3 1 0 0 1 1 1 1 NADH(P)-binding TrkA_N PF02254.13 gi|336253378|ref|YP_004596485.1| - 0.026 14.5 0.1 0.058 13.4 0.0 1.5 1 0 0 1 1 1 0 TrkA-N domain Epimerase PF01370.16 gi|336253378|ref|YP_004596485.1| - 0.07 12.5 0.0 0.092 12.1 0.0 1.2 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family Methyltransf_26 PF13659.1 gi|336253378|ref|YP_004596485.1| - 0.096 12.7 0.0 0.14 12.2 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain THF_DHG_CYH_C PF02882.14 gi|336253378|ref|YP_004596485.1| - 0.1 11.6 0.0 2.4 7.2 0.0 2.2 2 0 0 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Eno-Rase_NADH_b PF12242.3 gi|336253378|ref|YP_004596485.1| - 0.12 12.1 0.3 0.24 11.2 0.2 1.4 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase ThiF PF00899.16 gi|336253379|ref|YP_004596486.1| - 9.3e-45 151.7 0.1 1.5e-44 151.0 0.0 1.3 1 0 0 1 1 1 1 ThiF family MoeZ_MoeB PF05237.8 gi|336253379|ref|YP_004596486.1| - 2.6e-33 113.4 0.1 4e-33 112.8 0.1 1.3 1 0 0 1 1 1 1 MoeZ/MoeB domain Shikimate_DH PF01488.15 gi|336253379|ref|YP_004596486.1| - 0.01 15.9 0.3 0.025 14.6 0.2 1.7 1 1 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Saccharop_dh PF03435.13 gi|336253379|ref|YP_004596486.1| - 0.016 14.1 0.1 0.024 13.6 0.1 1.3 1 0 0 1 1 1 0 Saccharopine dehydrogenase NAD_binding_7 PF13241.1 gi|336253379|ref|YP_004596486.1| - 0.11 12.8 1.2 3.6 7.8 0.8 2.2 1 1 0 1 1 1 0 Putative NAD(P)-binding zf-ribbon_3 PF13248.1 gi|336253380|ref|YP_004596487.1| - 0.0029 16.7 4.1 0.0049 16.0 2.8 1.4 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|336253380|ref|YP_004596487.1| - 0.003 17.3 0.6 0.0036 17.0 0.4 1.2 1 0 0 1 1 1 1 Double zinc ribbon UPF0547 PF10571.4 gi|336253380|ref|YP_004596487.1| - 0.0062 16.2 2.2 0.014 15.1 1.5 1.5 1 1 0 1 1 1 1 Uncharacterised protein family UPF0547 OrfB_Zn_ribbon PF07282.6 gi|336253380|ref|YP_004596487.1| - 0.025 14.2 2.0 0.081 12.5 1.4 1.7 1 1 0 1 1 1 0 Putative transposase DNA-binding domain DnaJ_CXXCXGXG PF00684.14 gi|336253380|ref|YP_004596487.1| - 0.028 14.4 1.3 0.036 14.1 0.9 1.3 1 0 0 1 1 1 0 DnaJ central domain RecR PF02132.10 gi|336253380|ref|YP_004596487.1| - 0.036 13.5 1.0 0.061 12.7 0.7 1.3 1 0 0 1 1 1 0 RecR protein DUF1610 PF07754.6 gi|336253380|ref|YP_004596487.1| - 0.043 13.9 3.5 2.1 8.5 0.5 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF1610) A2L_zn_ribbon PF08792.5 gi|336253380|ref|YP_004596487.1| - 0.2 11.1 2.0 2.8 7.5 0.1 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|336253380|ref|YP_004596487.1| - 0.23 11.0 4.2 0.42 10.1 2.9 1.5 1 0 0 1 1 1 0 zinc-ribbon domain Cys_rich_CPCC PF14206.1 gi|336253380|ref|YP_004596487.1| - 0.26 10.8 3.2 0.45 10.1 2.2 1.4 1 1 0 1 1 1 0 Cysteine-rich CPCC zf-TFIIB PF13453.1 gi|336253380|ref|YP_004596487.1| - 3.8 6.7 6.0 1.5 8.0 0.8 2.2 1 1 2 3 3 3 0 Transcription factor zinc-finger Zn-ribbon_8 PF09723.5 gi|336253380|ref|YP_004596487.1| - 4.5 7.3 5.6 1.7 8.6 0.7 2.0 1 1 1 2 2 2 0 Zinc ribbon domain zf-ribbon_3 PF13248.1 gi|336253381|ref|YP_004596488.1| - 0.0038 16.3 0.8 0.61 9.3 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|336253381|ref|YP_004596488.1| - 0.011 15.4 0.8 0.022 14.5 0.6 1.5 1 1 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|336253381|ref|YP_004596488.1| - 0.019 14.4 1.3 2.4 7.7 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain XPA_N PF01286.13 gi|336253381|ref|YP_004596488.1| - 0.03 14.0 2.3 2.2 8.0 0.0 2.1 2 0 0 2 2 2 0 XPA protein N-terminal UPF0547 PF10571.4 gi|336253381|ref|YP_004596488.1| - 0.03 13.9 1.0 1.2 8.8 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-HYPF PF07503.7 gi|336253381|ref|YP_004596488.1| - 0.042 13.2 1.9 0.58 9.6 0.1 2.2 2 0 0 2 2 2 0 HypF finger TF_Zn_Ribbon PF08271.7 gi|336253381|ref|YP_004596488.1| - 0.087 12.1 0.9 5.3 6.4 0.0 2.1 2 0 0 2 2 2 0 TFIIB zinc-binding PhnA_Zn_Ribbon PF08274.7 gi|336253381|ref|YP_004596488.1| - 0.1 12.4 1.0 8.8 6.2 0.0 2.1 2 0 0 2 2 2 0 PhnA Zinc-Ribbon DCR PF14047.1 gi|336253381|ref|YP_004596488.1| - 0.12 12.6 1.3 0.14 12.4 0.7 1.3 1 1 0 1 1 1 0 Dppa2/4 conserved region A2L_zn_ribbon PF08792.5 gi|336253381|ref|YP_004596488.1| - 0.15 11.5 4.2 1.3 8.5 0.1 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain Zn-ribbon_8 PF09723.5 gi|336253381|ref|YP_004596488.1| - 0.35 10.8 5.8 5.3 7.0 3.9 2.1 1 1 0 1 1 1 0 Zinc ribbon domain zf-RING_3 PF14369.1 gi|336253381|ref|YP_004596488.1| - 0.65 10.0 3.3 0.7 9.9 0.2 2.2 2 0 0 2 2 2 0 zinc-finger Nudix_N_2 PF14803.1 gi|336253381|ref|YP_004596488.1| - 0.98 9.1 3.9 8.9 6.0 2.7 2.1 1 1 0 1 1 1 0 Nudix N-terminal Zn_Tnp_IS1595 PF12760.2 gi|336253381|ref|YP_004596488.1| - 2.2 8.1 4.5 4.4 7.2 0.3 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|336253381|ref|YP_004596488.1| - 7.5 6.1 6.5 9.3 5.8 0.5 2.6 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain UvrD-helicase PF00580.16 gi|336253382|ref|YP_004596489.1| - 2.7e-25 89.3 0.2 1.8e-11 43.8 0.0 2.4 2 0 0 2 2 2 2 UvrD/REP helicase N-terminal domain UvrD_C PF13361.1 gi|336253382|ref|YP_004596489.1| - 6e-13 48.9 0.1 1.4e-07 31.3 0.0 2.6 1 1 0 2 2 2 2 UvrD-like helicase C-terminal domain AAA_19 PF13245.1 gi|336253382|ref|YP_004596489.1| - 1.5e-09 37.4 0.1 4.7e-09 35.8 0.0 1.8 1 0 0 1 1 1 1 Part of AAA domain UvrD_C_2 PF13538.1 gi|336253382|ref|YP_004596489.1| - 5.8e-07 29.6 2.4 1.2e-05 25.3 0.3 3.3 2 1 0 2 2 2 1 UvrD-like helicase C-terminal domain AAA_30 PF13604.1 gi|336253382|ref|YP_004596489.1| - 1.3e-05 24.8 0.4 0.026 14.1 0.0 3.2 3 0 0 3 3 3 2 AAA domain Viral_helicase1 PF01443.13 gi|336253382|ref|YP_004596489.1| - 2.3e-05 24.0 0.2 3.5 7.0 0.0 4.2 4 1 0 4 4 4 2 Viral (Superfamily 1) RNA helicase Herpes_ori_bp PF02399.10 gi|336253382|ref|YP_004596489.1| - 0.00011 20.3 0.0 0.00017 19.7 0.0 1.2 1 0 0 1 1 1 1 Origin of replication binding protein AAA_11 PF13086.1 gi|336253382|ref|YP_004596489.1| - 0.00019 21.1 0.0 0.00037 20.1 0.0 1.8 1 1 0 1 1 1 1 AAA domain DEAD PF00270.24 gi|336253382|ref|YP_004596489.1| - 0.00087 18.8 0.0 1 8.7 0.0 2.7 2 0 0 2 2 2 2 DEAD/DEAH box helicase AAA_22 PF13401.1 gi|336253382|ref|YP_004596489.1| - 0.0016 18.5 0.1 0.77 9.9 0.0 3.1 3 0 0 3 3 3 1 AAA domain DUF2075 PF09848.4 gi|336253382|ref|YP_004596489.1| - 0.0055 15.7 0.0 1 8.2 0.0 3.1 3 0 0 3 3 3 1 Uncharacterized conserved protein (DUF2075) AAA_12 PF13087.1 gi|336253382|ref|YP_004596489.1| - 0.024 14.0 0.0 0.14 11.4 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|336253382|ref|YP_004596489.1| - 0.026 13.9 0.0 0.23 10.8 0.0 2.5 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|336253382|ref|YP_004596489.1| - 0.1 12.4 0.0 24 4.8 0.0 2.6 2 0 0 2 2 2 0 AAA domain Helicase_RecD PF05127.9 gi|336253382|ref|YP_004596489.1| - 0.13 11.9 0.0 0.43 10.1 0.0 1.9 2 0 0 2 2 2 0 Helicase DUF4131 PF13567.1 gi|336253384|ref|YP_004596491.1| - 0.051 12.9 0.0 0.055 12.8 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) Melittin PF01372.12 gi|336253384|ref|YP_004596491.1| - 0.098 12.0 0.4 0.19 11.1 0.3 1.4 1 0 0 1 1 1 0 Melittin Lum_binding PF00677.12 gi|336253385|ref|YP_004596492.1| - 2.4e-33 113.8 0.0 4.4e-16 58.5 0.0 2.0 2 0 0 2 2 2 2 Lumazine binding domain PrsW-protease PF13367.1 gi|336253387|ref|YP_004596494.1| - 6.8e-39 133.0 16.8 6.8e-39 133.0 11.6 2.4 2 1 1 3 3 3 1 Protease prsW family DUF1906 PF08924.6 gi|336253388|ref|YP_004596495.1| - 0.00052 19.8 0.2 0.00062 19.6 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1906) DUF402 PF04167.8 gi|336253389|ref|YP_004596496.1| - 4.4e-21 74.4 1.6 8.5e-21 73.5 1.1 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF402) Form_Nir_trans PF01226.12 gi|336253390|ref|YP_004596497.1| - 7.8e-51 172.3 14.9 9e-51 172.1 10.3 1.0 1 0 0 1 1 1 1 Formate/nitrite transporter NUDIX PF00293.23 gi|336253391|ref|YP_004596498.1| - 3.7e-11 42.8 0.3 4.5e-11 42.5 0.2 1.1 1 0 0 1 1 1 1 NUDIX domain SBF PF01758.11 gi|336253392|ref|YP_004596499.1| - 1.5e-38 132.0 16.7 2.4e-38 131.4 11.6 1.3 1 0 0 1 1 1 1 Sodium Bile acid symporter family DUF4137 PF13593.1 gi|336253392|ref|YP_004596499.1| - 1.6e-13 50.4 20.3 2e-13 50.1 14.1 1.1 1 0 0 1 1 1 1 SBF-like CPA transporter family (DUF4137) Mem_trans PF03547.13 gi|336253392|ref|YP_004596499.1| - 0.0037 15.6 10.4 0.0073 14.6 7.2 1.5 1 0 0 1 1 1 1 Membrane transport protein DUF3325 PF11804.3 gi|336253394|ref|YP_004596501.1| - 0.015 15.2 6.0 0.018 14.9 4.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3325) DUF3093 PF11292.3 gi|336253394|ref|YP_004596501.1| - 0.042 13.6 1.5 0.053 13.3 1.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3093) DUF2142 PF09913.4 gi|336253394|ref|YP_004596501.1| - 0.22 10.1 2.4 0.25 9.9 1.7 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2142) Hexapep PF00132.19 gi|336253395|ref|YP_004596502.1| - 7e-06 25.3 3.8 0.37 10.3 0.0 3.5 3 0 0 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|336253395|ref|YP_004596502.1| - 0.37 10.3 7.6 2.4 7.7 0.1 2.9 3 1 0 3 3 3 0 Hexapeptide repeat of succinyl-transferase zinc_ribbon_2 PF13240.1 gi|336253396|ref|YP_004596503.1| - 0.0014 18.0 0.8 0.0025 17.2 0.5 1.4 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|336253396|ref|YP_004596503.1| - 0.0087 15.2 3.5 0.02 14.1 2.4 1.6 1 1 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|336253396|ref|YP_004596503.1| - 0.014 15.2 0.5 0.02 14.7 0.3 1.3 1 0 0 1 1 1 0 Double zinc ribbon CcmH PF03918.9 gi|336253396|ref|YP_004596503.1| - 0.046 12.7 0.1 0.89 8.5 0.0 2.0 1 1 0 2 2 2 0 Cytochrome C biogenesis protein CpXC PF14353.1 gi|336253396|ref|YP_004596503.1| - 0.055 13.4 0.4 0.077 12.9 0.3 1.1 1 0 0 1 1 1 0 CpXC protein Zn_Tnp_IS1595 PF12760.2 gi|336253396|ref|YP_004596503.1| - 0.087 12.6 1.2 0.14 12.0 0.8 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|336253396|ref|YP_004596503.1| - 0.19 11.2 0.2 0.19 11.2 0.1 1.5 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit RRN7 PF11781.3 gi|336253396|ref|YP_004596503.1| - 9 5.8 6.7 58 3.2 4.6 2.1 1 1 0 1 1 1 0 RNA polymerase I-specific transcription initiation factor Rrn7 HTH_26 PF13443.1 gi|336253397|ref|YP_004596504.1| - 0.13 12.5 0.0 0.21 11.7 0.0 1.3 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain TraB PF01963.12 gi|336253398|ref|YP_004596505.1| - 4e-06 26.4 0.0 0.0066 15.9 0.0 2.4 2 0 0 2 2 2 2 TraB family PRC PF05239.11 gi|336253399|ref|YP_004596506.1| - 0.13 12.0 0.7 0.26 11.1 0.5 1.4 1 0 0 1 1 1 0 PRC-barrel domain eRF1_2 PF03464.10 gi|336253400|ref|YP_004596507.1| - 1.6e-37 128.8 0.0 5.2e-37 127.1 0.0 1.9 2 0 0 2 2 2 1 eRF1 domain 2 eRF1_3 PF03465.10 gi|336253400|ref|YP_004596507.1| - 1.1e-29 102.9 0.3 4.4e-29 101.0 0.0 2.2 2 0 0 2 2 2 1 eRF1 domain 3 eRF1_1 PF03463.10 gi|336253400|ref|YP_004596507.1| - 5.3e-25 87.5 0.0 8.4e-25 86.8 0.0 1.3 1 0 0 1 1 1 1 eRF1 domain 1 TF_Zn_Ribbon PF08271.7 gi|336253400|ref|YP_004596507.1| - 0.0061 15.8 2.6 0.0061 15.8 1.8 2.2 2 0 0 2 2 2 1 TFIIB zinc-binding Zn-ribbon_8 PF09723.5 gi|336253400|ref|YP_004596507.1| - 0.0069 16.3 2.6 0.019 14.9 1.8 1.7 1 0 0 1 1 1 1 Zinc ribbon domain Lar_restr_allev PF14354.1 gi|336253400|ref|YP_004596507.1| - 0.0093 16.2 2.0 0.022 15.0 1.4 1.5 1 0 0 1 1 1 1 Restriction alleviation protein Lar eIF-5_eIF-2B PF01873.12 gi|336253400|ref|YP_004596507.1| - 0.011 15.4 0.6 0.036 13.7 0.1 2.0 2 0 0 2 2 2 0 Domain found in IF2B/IF5 OrfB_Zn_ribbon PF07282.6 gi|336253400|ref|YP_004596507.1| - 0.062 12.9 1.4 0.13 11.8 1.0 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DUF1610 PF07754.6 gi|336253400|ref|YP_004596507.1| - 0.19 11.9 0.3 0.19 11.9 0.2 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF1610) DUF2387 PF09526.5 gi|336253400|ref|YP_004596507.1| - 0.22 11.4 4.9 0.083 12.8 1.0 2.0 2 0 0 2 2 2 0 Probable metal-binding protein (DUF2387) CpXC PF14353.1 gi|336253400|ref|YP_004596507.1| - 0.32 10.9 1.7 12 5.8 0.0 3.1 3 1 0 3 3 3 0 CpXC protein YhfH PF14149.1 gi|336253400|ref|YP_004596507.1| - 0.79 9.5 4.8 1.4 8.7 0.1 2.8 3 0 0 3 3 3 0 YhfH-like protein LXG PF04740.7 gi|336253400|ref|YP_004596507.1| - 1.5 8.5 5.6 0.55 9.9 0.8 2.6 3 0 0 3 3 3 0 LXG domain of WXG superfamily zf-ribbon_3 PF13248.1 gi|336253400|ref|YP_004596507.1| - 1.9 7.8 5.4 7.9 5.8 3.6 2.0 1 1 1 2 2 2 0 zinc-ribbon domain CbiA PF01656.18 gi|336253401|ref|YP_004596508.1| - 1.1e-32 113.0 0.2 1.5e-32 112.6 0.1 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|336253401|ref|YP_004596508.1| - 1.7e-15 57.3 0.0 2.3e-15 56.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain Fer4_NifH PF00142.13 gi|336253401|ref|YP_004596508.1| - 7.6e-13 48.2 0.0 2.9e-12 46.3 0.0 1.7 1 1 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MipZ PF09140.6 gi|336253401|ref|YP_004596508.1| - 7.3e-09 35.0 0.3 3.5e-08 32.8 0.0 2.1 2 1 0 2 2 2 1 ATPase MipZ YhjQ PF06564.7 gi|336253401|ref|YP_004596508.1| - 9.3e-09 34.9 0.0 1.7e-08 34.1 0.0 1.3 1 0 0 1 1 1 1 YhjQ protein ArsA_ATPase PF02374.10 gi|336253401|ref|YP_004596508.1| - 5.7e-07 28.8 1.4 9.3e-06 24.8 1.6 2.0 2 0 0 2 2 2 1 Anion-transporting ATPase ParA PF10609.4 gi|336253401|ref|YP_004596508.1| - 6.2e-05 22.7 0.0 0.00016 21.4 0.0 1.7 1 0 0 1 1 1 1 ParA/MinD ATPase like AAA_26 PF13500.1 gi|336253401|ref|YP_004596508.1| - 0.00027 20.5 1.7 0.003 17.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain VirC1 PF07015.6 gi|336253401|ref|YP_004596508.1| - 0.00058 19.0 0.4 0.001 18.2 0.3 1.3 1 0 0 1 1 1 1 VirC1 protein ArgK PF03308.11 gi|336253401|ref|YP_004596508.1| - 0.0011 17.8 3.1 0.0042 15.9 2.1 1.8 1 1 0 1 1 1 1 ArgK protein MobB PF03205.9 gi|336253401|ref|YP_004596508.1| - 0.014 15.0 0.3 0.03 14.0 0.2 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B FTHFS PF01268.14 gi|336253401|ref|YP_004596508.1| - 0.029 12.3 0.7 0.042 11.8 0.5 1.1 1 0 0 1 1 1 0 Formate--tetrahydrofolate ligase AAA_10 PF12846.2 gi|336253401|ref|YP_004596508.1| - 0.036 13.4 0.4 0.068 12.5 0.2 1.4 1 1 0 1 1 1 0 AAA-like domain SRP54 PF00448.17 gi|336253401|ref|YP_004596508.1| - 0.13 11.6 1.6 0.26 10.6 1.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_19 PF13245.1 gi|336253401|ref|YP_004596508.1| - 0.5 10.1 4.1 1 9.1 1.4 2.5 2 0 0 2 2 2 0 Part of AAA domain BSP_II PF05432.6 gi|336253402|ref|YP_004596509.1| - 0.36 10.0 11.9 0.43 9.8 8.3 1.1 1 0 0 1 1 1 0 Bone sialoprotein II (BSP-II) LPAM_1 PF08139.7 gi|336253402|ref|YP_004596509.1| - 2.3 8.5 7.1 0.14 12.4 1.5 1.5 2 0 0 2 2 2 0 Prokaryotic membrane lipoprotein lipid attachment site Nop14 PF04147.7 gi|336253402|ref|YP_004596509.1| - 4 5.2 12.0 4.5 5.0 8.3 1.0 1 0 0 1 1 1 0 Nop14-like family CobT PF06213.7 gi|336253402|ref|YP_004596509.1| - 5 6.1 13.0 7.1 5.6 9.0 1.2 1 0 0 1 1 1 0 Cobalamin biosynthesis protein CobT tRNA-synt_1d PF00750.14 gi|336253403|ref|YP_004596510.1| - 1.7e-59 201.4 1.3 2.3e-59 201.0 0.9 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (R) DALR_1 PF05746.10 gi|336253403|ref|YP_004596510.1| - 8.3e-32 109.6 0.1 5.5e-31 107.0 0.0 2.3 2 0 0 2 2 2 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.11 gi|336253403|ref|YP_004596510.1| - 1.8e-09 37.9 0.0 6.1e-09 36.3 0.0 1.9 1 0 0 1 1 1 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1f PF01921.13 gi|336253403|ref|YP_004596510.1| - 0.0047 15.6 0.0 0.046 12.3 0.0 2.2 2 0 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1g PF09334.6 gi|336253403|ref|YP_004596510.1| - 0.11 11.1 0.0 2.7 6.5 0.0 2.7 3 0 0 3 3 3 0 tRNA synthetases class I (M) PRK PF00485.13 gi|336253404|ref|YP_004596511.1| - 2.1e-48 164.4 0.1 2.7e-48 164.1 0.1 1.1 1 0 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family AAA_17 PF13207.1 gi|336253404|ref|YP_004596511.1| - 1.4e-07 32.3 0.4 3.3e-07 31.1 0.2 1.6 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|336253404|ref|YP_004596511.1| - 9.8e-06 25.9 0.1 1.8e-05 25.0 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|336253404|ref|YP_004596511.1| - 0.00018 21.4 0.0 0.00032 20.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain CoaE PF01121.15 gi|336253404|ref|YP_004596511.1| - 0.00022 20.6 0.3 0.0078 15.6 0.0 2.1 2 0 0 2 2 2 1 Dephospho-CoA kinase Zeta_toxin PF06414.7 gi|336253404|ref|YP_004596511.1| - 0.00036 19.6 0.0 0.00064 18.8 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin CPT PF07931.7 gi|336253404|ref|YP_004596511.1| - 0.0014 18.3 0.0 0.0036 16.9 0.0 2.0 2 1 0 2 2 2 1 Chloramphenicol phosphotransferase-like protein T2SE PF00437.15 gi|336253404|ref|YP_004596511.1| - 0.002 17.0 0.1 0.035 13.0 0.0 2.1 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_26 PF13500.1 gi|336253404|ref|YP_004596511.1| - 0.0037 16.8 1.0 0.14 11.7 0.1 2.5 1 1 1 2 2 2 1 AAA domain CbiA PF01656.18 gi|336253404|ref|YP_004596511.1| - 0.015 14.6 0.0 0.056 12.8 0.0 1.8 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain DUF348 PF03990.9 gi|336253404|ref|YP_004596511.1| - 0.018 14.6 0.7 0.049 13.2 0.5 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF348) ABC_tran PF00005.22 gi|336253404|ref|YP_004596511.1| - 0.019 15.2 0.0 0.026 14.8 0.0 1.3 1 0 0 1 1 1 0 ABC transporter AAA_19 PF13245.1 gi|336253404|ref|YP_004596511.1| - 0.023 14.4 0.3 0.05 13.3 0.2 1.5 1 0 0 1 1 1 0 Part of AAA domain AAA_33 PF13671.1 gi|336253404|ref|YP_004596511.1| - 0.025 14.4 0.0 0.047 13.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain Ribosomal_60s PF00428.14 gi|336253404|ref|YP_004596511.1| - 0.033 14.5 2.0 0.061 13.7 1.4 1.4 1 0 0 1 1 1 0 60s Acidic ribosomal protein AAA_16 PF13191.1 gi|336253404|ref|YP_004596511.1| - 0.088 12.7 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.1 gi|336253404|ref|YP_004596511.1| - 0.11 12.6 0.1 0.17 12.0 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA PF00004.24 gi|336253404|ref|YP_004596511.1| - 0.12 12.5 0.0 0.24 11.5 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) MobB PF03205.9 gi|336253404|ref|YP_004596511.1| - 0.38 10.4 2.8 1.8 8.2 0.4 2.7 2 1 1 3 3 3 0 Molybdopterin guanine dinucleotide synthesis protein B NUDIX PF00293.23 gi|336253405|ref|YP_004596512.1| - 5.3e-17 61.7 0.3 6.8e-17 61.3 0.2 1.1 1 0 0 1 1 1 1 NUDIX domain Nudix_N_2 PF14803.1 gi|336253405|ref|YP_004596512.1| - 3.3e-05 23.4 1.1 7.5e-05 22.3 0.8 1.6 1 0 0 1 1 1 1 Nudix N-terminal zf-TFIIB PF13453.1 gi|336253405|ref|YP_004596512.1| - 0.00017 20.7 1.4 0.00039 19.5 1.0 1.6 1 0 0 1 1 1 1 Transcription factor zinc-finger DZR PF12773.2 gi|336253405|ref|YP_004596512.1| - 0.0038 17.0 0.9 0.0068 16.1 0.6 1.4 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|336253405|ref|YP_004596512.1| - 0.012 14.8 3.9 0.87 8.8 0.3 2.6 2 0 0 2 2 2 0 zinc-ribbon domain zf-ISL3 PF14690.1 gi|336253405|ref|YP_004596512.1| - 0.089 12.8 2.8 4.6 7.3 0.2 2.3 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 TF_Zn_Ribbon PF08271.7 gi|336253405|ref|YP_004596512.1| - 0.22 10.8 3.3 0.67 9.3 2.3 1.9 1 1 0 1 1 1 0 TFIIB zinc-binding Cys_rich_CPXG PF14255.1 gi|336253405|ref|YP_004596512.1| - 0.23 11.2 1.4 1.7 8.5 0.0 2.3 2 0 0 2 2 2 0 Cysteine-rich CPXCG zinc_ribbon_2 PF13240.1 gi|336253405|ref|YP_004596512.1| - 0.29 10.6 3.6 2.5 7.6 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.4 gi|336253405|ref|YP_004596512.1| - 0.56 9.9 7.9 0.31 10.7 1.0 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-IS66 PF13005.2 gi|336253405|ref|YP_004596512.1| - 7 6.7 7.3 8.6 6.4 0.1 2.5 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 PALP PF00291.20 gi|336253406|ref|YP_004596513.1| - 2.2e-54 184.7 0.3 2.5e-54 184.5 0.2 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme A2L_zn_ribbon PF08792.5 gi|336253406|ref|YP_004596513.1| - 0.076 12.4 0.0 6.1 6.4 0.0 2.3 2 0 0 2 2 2 0 A2L zinc ribbon domain AstE_AspA PF04952.9 gi|336253407|ref|YP_004596514.1| - 2.2e-56 190.9 0.0 2.5e-56 190.7 0.0 1.0 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family DUF95 PF01944.12 gi|336253408|ref|YP_004596515.1| - 1.2e-28 99.8 9.0 1.2e-28 99.8 6.3 3.2 2 1 0 2 2 2 1 Integral membrane protein DUF95 Lactamase_B PF00753.22 gi|336253409|ref|YP_004596516.1| - 1.3e-16 60.8 4.2 2.8e-16 59.7 2.9 1.6 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Rhodanese PF00581.15 gi|336253409|ref|YP_004596516.1| - 3.1e-16 59.7 0.0 6.4e-16 58.7 0.0 1.5 1 0 0 1 1 1 1 Rhodanese-like domain PTS_IIB PF02302.12 gi|336253409|ref|YP_004596516.1| - 0.081 13.4 0.0 0.37 11.3 0.0 2.1 2 0 0 2 2 2 0 PTS system, Lactose/Cellobiose specific IIB subunit Aldedh PF00171.17 gi|336253410|ref|YP_004596517.1| - 8e-155 515.6 1.6 9e-155 515.5 1.1 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.9 gi|336253410|ref|YP_004596517.1| - 0.12 11.0 0.0 0.28 9.8 0.0 1.6 1 1 0 1 1 1 0 Acyl-CoA reductase (LuxC) SnoaL_2 PF12680.2 gi|336253411|ref|YP_004596518.1| - 1.4e-17 63.9 5.7 1.6e-17 63.7 4.0 1.1 1 0 0 1 1 1 1 SnoaL-like domain DUF4440 PF14534.1 gi|336253411|ref|YP_004596518.1| - 6.7e-10 39.1 1.5 9.2e-10 38.6 1.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4440) SnoaL_4 PF13577.1 gi|336253411|ref|YP_004596518.1| - 1.1e-07 31.7 1.4 1.3e-07 31.6 1.0 1.1 1 0 0 1 1 1 1 SnoaL-like domain SnoaL PF07366.7 gi|336253411|ref|YP_004596518.1| - 2.4e-07 30.3 1.3 6e-07 29.0 0.9 1.6 1 1 0 1 1 1 1 SnoaL-like polyketide cyclase NTF2 PF02136.15 gi|336253411|ref|YP_004596518.1| - 0.00017 21.9 0.0 0.00022 21.6 0.0 1.2 1 0 0 1 1 1 1 Nuclear transport factor 2 (NTF2) domain SnoaL_3 PF13474.1 gi|336253411|ref|YP_004596518.1| - 0.00074 19.5 0.1 0.0011 18.9 0.0 1.3 1 1 0 1 1 1 1 SnoaL-like domain LEH PF07858.7 gi|336253411|ref|YP_004596518.1| - 0.019 14.9 0.3 0.029 14.3 0.2 1.3 1 1 0 1 1 1 0 Limonene-1,2-epoxide hydrolase catalytic domain Lumazine_bd_2 PF12893.2 gi|336253411|ref|YP_004596518.1| - 0.019 15.4 0.2 0.026 15.0 0.1 1.2 1 0 0 1 1 1 0 Putative lumazine-binding T2SJ PF11612.3 gi|336253411|ref|YP_004596518.1| - 0.082 12.6 1.0 2.2 7.9 0.1 2.1 1 1 1 2 2 2 0 Type II secretion system (T2SS), protein J Lumazine_bd PF12870.2 gi|336253411|ref|YP_004596518.1| - 0.1 12.6 0.0 0.13 12.3 0.0 1.2 1 0 0 1 1 1 0 Lumazine-binding domain Rieske PF00355.21 gi|336253412|ref|YP_004596519.1| - 2.1e-13 49.6 0.1 5.1e-13 48.4 0.0 1.7 2 0 0 2 2 2 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.1 gi|336253412|ref|YP_004596519.1| - 2.8e-12 46.2 0.0 5.3e-12 45.3 0.0 1.5 1 0 0 1 1 1 1 Rieske-like [2Fe-2S] domain TPR_14 PF13428.1 gi|336253412|ref|YP_004596519.1| - 9.8 7.1 9.6 0.63 10.8 0.3 3.7 3 0 0 3 3 3 0 Tetratricopeptide repeat DUF367 PF04034.8 gi|336253413|ref|YP_004596520.1| - 3.3e-41 139.8 0.0 4.1e-41 139.5 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF367) RLI PF04068.10 gi|336253413|ref|YP_004596520.1| - 2.2e-06 27.1 0.1 4.1e-06 26.2 0.0 1.4 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI Ribosomal_L40e PF01020.12 gi|336253414|ref|YP_004596521.1| - 3.3e-06 26.5 5.6 4e-06 26.3 3.9 1.1 1 0 0 1 1 1 1 Ribosomal L40e family DZR PF12773.2 gi|336253414|ref|YP_004596521.1| - 0.00051 19.8 1.3 0.00059 19.5 0.9 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|336253414|ref|YP_004596521.1| - 0.0032 16.8 0.7 0.0044 16.4 0.5 1.2 1 0 0 1 1 1 1 zinc-ribbon domain zf-DHHC PF01529.15 gi|336253414|ref|YP_004596521.1| - 0.0048 16.3 1.6 0.0051 16.2 1.1 1.0 1 0 0 1 1 1 1 DHHC palmitoyltransferase zf-ribbon_3 PF13248.1 gi|336253414|ref|YP_004596521.1| - 0.009 15.1 0.8 0.013 14.7 0.6 1.2 1 0 0 1 1 1 1 zinc-ribbon domain zf-CHY PF05495.7 gi|336253414|ref|YP_004596521.1| - 0.042 14.0 1.0 0.053 13.6 0.7 1.3 1 0 0 1 1 1 0 CHY zinc finger DNA_RNApol_7kD PF03604.8 gi|336253414|ref|YP_004596521.1| - 0.12 11.8 6.3 0.28 10.6 4.4 1.6 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Zn-ribbon_8 PF09723.5 gi|336253414|ref|YP_004596521.1| - 0.16 11.9 2.0 1.2 9.1 0.1 2.2 2 1 0 2 2 2 0 Zinc ribbon domain Ribosomal_L37e PF01907.14 gi|336253414|ref|YP_004596521.1| - 0.46 10.3 3.5 0.65 9.8 2.4 1.4 1 1 0 1 1 1 0 Ribosomal protein L37e RNA_POL_M_15KD PF02150.11 gi|336253414|ref|YP_004596521.1| - 0.48 10.1 5.6 0.31 10.7 1.1 2.1 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit Lactamase_B PF00753.22 gi|336253415|ref|YP_004596522.1| - 1.5e-16 60.6 9.9 1.6e-16 60.5 6.2 1.6 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|336253415|ref|YP_004596522.1| - 0.0012 18.4 2.1 0.0026 17.3 1.5 1.7 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|336253415|ref|YP_004596522.1| - 0.061 13.0 1.7 0.22 11.2 1.2 1.9 1 1 0 1 1 1 0 Beta-lactamase superfamily domain DUF1967 PF09269.6 gi|336253415|ref|YP_004596522.1| - 0.067 12.8 0.0 0.3 10.7 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1967) DUF99 PF01949.11 gi|336253417|ref|YP_004596524.1| - 4.4e-46 156.3 0.0 5.2e-46 156.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 UDG PF03167.14 gi|336253418|ref|YP_004596525.1| - 2.9e-34 117.7 0.0 3.7e-34 117.3 0.0 1.0 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily SnoaL_2 PF12680.2 gi|336253419|ref|YP_004596526.1| - 2.1e-19 69.7 2.6 2.6e-19 69.4 1.8 1.1 1 0 0 1 1 1 1 SnoaL-like domain SnoaL PF07366.7 gi|336253419|ref|YP_004596526.1| - 7.7e-11 41.6 0.4 2.4e-10 40.0 0.3 1.6 1 1 0 1 1 1 1 SnoaL-like polyketide cyclase SnoaL_4 PF13577.1 gi|336253419|ref|YP_004596526.1| - 1.9e-10 40.7 0.4 2.3e-10 40.4 0.3 1.2 1 0 0 1 1 1 1 SnoaL-like domain NTF2 PF02136.15 gi|336253419|ref|YP_004596526.1| - 4.6e-06 27.0 0.0 5.6e-06 26.7 0.0 1.2 1 0 0 1 1 1 1 Nuclear transport factor 2 (NTF2) domain SnoaL_3 PF13474.1 gi|336253419|ref|YP_004596526.1| - 0.0015 18.5 0.1 0.0021 18.0 0.0 1.3 1 1 0 1 1 1 1 SnoaL-like domain Lumazine_bd PF12870.2 gi|336253419|ref|YP_004596526.1| - 0.0042 17.1 0.0 0.0063 16.5 0.0 1.3 1 0 0 1 1 1 1 Lumazine-binding domain DUF4440 PF14534.1 gi|336253419|ref|YP_004596526.1| - 0.005 17.0 0.8 0.0066 16.6 0.5 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4440) DNAJ_related PF12339.3 gi|336253419|ref|YP_004596526.1| - 0.062 13.1 0.2 0.82 9.5 0.0 2.0 1 1 1 2 2 2 0 DNA-J related protein GATase PF00117.23 gi|336253420|ref|YP_004596527.1| - 7.8e-34 116.8 0.0 8.9e-34 116.6 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.9 gi|336253420|ref|YP_004596527.1| - 4.1e-09 36.2 0.0 9.7e-09 35.0 0.0 1.6 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain SNO PF01174.14 gi|336253420|ref|YP_004596527.1| - 8.5e-07 28.7 0.0 2.1e-06 27.5 0.0 1.6 1 1 0 1 1 1 1 SNO glutamine amidotransferase family Peptidase_C26 PF07722.8 gi|336253420|ref|YP_004596527.1| - 0.00012 21.5 0.3 0.0022 17.4 0.2 2.4 1 1 0 1 1 1 1 Peptidase C26 GATase_5 PF13507.1 gi|336253420|ref|YP_004596527.1| - 0.021 13.7 0.0 0.087 11.7 0.0 2.1 2 1 0 2 2 2 0 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.19 gi|336253420|ref|YP_004596527.1| - 0.024 14.1 0.0 0.042 13.2 0.0 1.4 1 0 0 1 1 1 0 DJ-1/PfpI family Cdc6_C PF09079.6 gi|336253421|ref|YP_004596528.1| - 1.6e-18 66.1 0.1 5e-18 64.6 0.0 1.9 2 0 0 2 2 2 1 CDC6, C terminal AAA_22 PF13401.1 gi|336253421|ref|YP_004596528.1| - 9.8e-13 48.3 0.6 5.8e-12 45.8 0.0 2.2 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|336253421|ref|YP_004596528.1| - 4.9e-12 46.2 1.7 3.1e-11 43.6 0.0 2.4 2 1 1 3 3 3 1 AAA ATPase domain AAA PF00004.24 gi|336253421|ref|YP_004596528.1| - 2e-07 31.2 0.0 6.8e-07 29.5 0.0 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF815 PF05673.8 gi|336253421|ref|YP_004596528.1| - 2.9e-05 23.1 0.0 5e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) Arch_ATPase PF01637.13 gi|336253421|ref|YP_004596528.1| - 4.9e-05 23.1 0.2 9.5e-05 22.1 0.0 1.6 2 0 0 2 2 1 1 Archaeal ATPase Sigma54_activat PF00158.21 gi|336253421|ref|YP_004596528.1| - 0.00017 21.1 0.0 0.00036 20.0 0.0 1.5 1 0 0 1 1 1 1 Sigma-54 interaction domain NACHT PF05729.7 gi|336253421|ref|YP_004596528.1| - 0.00021 21.0 0.0 0.0007 19.2 0.0 1.8 2 0 0 2 2 2 1 NACHT domain Sigma54_activ_2 PF14532.1 gi|336253421|ref|YP_004596528.1| - 0.0015 18.5 0.1 0.013 15.5 0.0 2.3 2 0 0 2 2 2 1 Sigma-54 interaction domain DEAD PF00270.24 gi|336253421|ref|YP_004596528.1| - 0.0037 16.7 2.0 0.51 9.8 1.4 2.4 1 1 0 1 1 1 1 DEAD/DEAH box helicase KaiC PF06745.8 gi|336253421|ref|YP_004596528.1| - 0.0055 15.8 0.1 0.013 14.6 0.1 1.6 1 1 0 1 1 1 1 KaiC NB-ARC PF00931.17 gi|336253421|ref|YP_004596528.1| - 0.0072 15.2 0.0 0.011 14.5 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain PhoH PF02562.11 gi|336253421|ref|YP_004596528.1| - 0.013 14.7 0.1 4 6.6 0.0 2.3 2 0 0 2 2 2 0 PhoH-like protein KAP_NTPase PF07693.9 gi|336253421|ref|YP_004596528.1| - 0.014 14.3 0.4 0.061 12.2 0.0 2.1 2 1 0 2 2 2 0 KAP family P-loop domain DUF87 PF01935.12 gi|336253421|ref|YP_004596528.1| - 0.014 15.1 1.0 0.34 10.6 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function DUF87 AAA_2 PF07724.9 gi|336253421|ref|YP_004596528.1| - 0.015 15.2 0.1 0.031 14.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) IstB_IS21 PF01695.12 gi|336253421|ref|YP_004596528.1| - 0.021 14.2 0.6 0.12 11.7 0.1 2.4 2 1 0 2 2 2 0 IstB-like ATP binding protein Zot PF05707.7 gi|336253421|ref|YP_004596528.1| - 0.023 14.1 0.0 0.041 13.3 0.0 1.3 1 0 0 1 1 1 0 Zonular occludens toxin (Zot) FtsK_SpoIIIE PF01580.13 gi|336253421|ref|YP_004596528.1| - 0.025 14.0 0.1 0.25 10.7 0.0 2.3 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_5 PF07728.9 gi|336253421|ref|YP_004596528.1| - 0.025 14.3 0.6 0.27 10.9 0.4 2.4 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_10 PF12846.2 gi|336253421|ref|YP_004596528.1| - 0.053 12.9 0.3 0.27 10.6 0.0 2.0 2 0 0 2 2 2 0 AAA-like domain DUF2075 PF09848.4 gi|336253421|ref|YP_004596528.1| - 0.069 12.1 0.0 0.1 11.5 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) RNA_helicase PF00910.17 gi|336253421|ref|YP_004596528.1| - 0.07 13.3 0.1 0.42 10.7 0.0 2.2 2 0 0 2 2 2 0 RNA helicase CcoS PF03597.10 gi|336253422|ref|YP_004596529.1| - 0.019 14.4 1.1 0.019 14.4 0.8 3.4 3 0 0 3 3 3 0 Cytochrome oxidase maturation protein cbb3-type DUF202 PF02656.10 gi|336253422|ref|YP_004596529.1| - 4.8 7.4 12.8 0.32 11.2 0.8 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF202) DUF1469 PF07332.6 gi|336253422|ref|YP_004596529.1| - 6.6 6.4 15.4 35 4.1 4.8 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1469) SWIM PF04434.12 gi|336253423|ref|YP_004596530.1| - 0.0073 15.7 4.1 0.071 12.6 2.8 2.1 1 1 0 1 1 1 1 SWIM zinc finger TRM PF02005.11 gi|336253424|ref|YP_004596531.1| - 1.7e-91 306.9 0.0 1.9e-91 306.7 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_26 PF13659.1 gi|336253424|ref|YP_004596531.1| - 8.7e-09 35.4 1.2 1.5e-08 34.6 0.8 1.5 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|336253424|ref|YP_004596531.1| - 8.1e-07 28.5 0.0 1.4e-06 27.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|336253424|ref|YP_004596531.1| - 7.2e-06 25.6 0.0 1.1e-05 25.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|336253424|ref|YP_004596531.1| - 2.5e-05 23.5 0.1 3.8e-05 22.9 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_18 PF12847.2 gi|336253424|ref|YP_004596531.1| - 0.00023 21.7 0.3 0.00058 20.4 0.1 1.7 2 0 0 2 2 1 1 Methyltransferase domain Zn-ribbon_8 PF09723.5 gi|336253424|ref|YP_004596531.1| - 0.0012 18.7 0.6 0.003 17.4 0.4 1.7 1 0 0 1 1 1 1 Zinc ribbon domain Cons_hypoth95 PF03602.10 gi|336253424|ref|YP_004596531.1| - 0.0069 15.7 0.0 0.011 15.1 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Met_10 PF02475.11 gi|336253424|ref|YP_004596531.1| - 0.0083 15.7 0.0 0.01 15.4 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_12 PF08242.7 gi|336253424|ref|YP_004596531.1| - 0.014 15.8 0.1 0.028 14.8 0.1 1.5 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_25 PF13649.1 gi|336253424|ref|YP_004596531.1| - 0.019 15.3 0.1 0.041 14.2 0.1 1.5 1 0 0 1 1 1 0 Methyltransferase domain UPF0020 PF01170.13 gi|336253424|ref|YP_004596531.1| - 0.019 14.5 0.0 0.032 13.8 0.0 1.3 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 Methyltransf_11 PF08241.7 gi|336253424|ref|YP_004596531.1| - 0.037 14.4 0.1 0.09 13.2 0.1 1.7 1 0 0 1 1 1 0 Methyltransferase domain Zn_Tnp_IS1595 PF12760.2 gi|336253425|ref|YP_004596532.1| - 0.0015 18.2 0.8 1.3 8.8 0.0 2.1 2 0 0 2 2 2 2 Transposase zinc-ribbon domain Auto_anti-p27 PF06677.7 gi|336253425|ref|YP_004596532.1| - 0.048 13.4 1.5 3.5 7.4 0.1 2.2 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-IS66 PF13005.2 gi|336253425|ref|YP_004596532.1| - 0.07 13.1 0.2 0.07 13.1 0.1 2.1 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 zf-HYPF PF07503.7 gi|336253425|ref|YP_004596532.1| - 0.1 12.0 2.8 1 8.8 0.1 2.2 2 0 0 2 2 2 0 HypF finger DUF35_N PF12172.3 gi|336253425|ref|YP_004596532.1| - 0.13 12.1 3.9 4.1 7.4 0.2 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-ISL3 PF14690.1 gi|336253425|ref|YP_004596532.1| - 0.26 11.3 3.0 2.8 8.0 0.1 2.2 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 UPF0547 PF10571.4 gi|336253425|ref|YP_004596532.1| - 0.56 9.9 7.7 1.3 8.7 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 RRN7 PF11781.3 gi|336253425|ref|YP_004596532.1| - 0.96 9.0 3.6 1.7 8.1 0.4 2.2 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 Zn-ribbon_8 PF09723.5 gi|336253425|ref|YP_004596532.1| - 1.2 9.1 4.2 9.3 6.3 0.2 2.2 2 0 0 2 2 2 0 Zinc ribbon domain Rubredoxin PF00301.15 gi|336253425|ref|YP_004596532.1| - 1.6 8.6 5.7 2.2 8.2 0.2 2.2 2 0 0 2 2 2 0 Rubredoxin zf-RING_4 PF14570.1 gi|336253425|ref|YP_004596532.1| - 1.7 8.2 5.1 6.7 6.3 0.5 2.2 2 0 0 2 2 2 0 RING/Ubox like zinc-binding domain zf-TFIIB PF13453.1 gi|336253425|ref|YP_004596532.1| - 1.7 7.8 6.3 15 4.9 4.4 2.1 1 1 0 1 1 1 0 Transcription factor zinc-finger zf-NADH-PPase PF09297.6 gi|336253425|ref|YP_004596532.1| - 6.3 6.4 6.6 2.7 7.5 0.2 2.5 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain Virul_fac_BrkB PF03631.10 gi|336253426|ref|YP_004596533.1| - 4.7e-40 137.5 27.5 4.7e-40 137.5 19.0 2.0 2 0 0 2 2 2 1 Virulence factor BrkB Kinesin-relat_1 PF12711.2 gi|336253426|ref|YP_004596533.1| - 0.02 15.2 2.8 0.038 14.3 1.9 1.3 1 0 0 1 1 1 0 Kinesin motor DUF812 PF05667.6 gi|336253426|ref|YP_004596533.1| - 0.026 13.0 3.8 0.036 12.5 2.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF812) Cast PF10174.4 gi|336253426|ref|YP_004596533.1| - 0.048 11.7 7.2 0.072 11.1 5.0 1.2 1 0 0 1 1 1 0 RIM-binding protein of the cytomatrix active zone Cluap1 PF10234.4 gi|336253426|ref|YP_004596533.1| - 0.26 10.4 1.2 0.39 9.8 0.9 1.2 1 0 0 1 1 1 0 Clusterin-associated protein-1 Gln-synt_C PF00120.19 gi|336253427|ref|YP_004596534.1| - 3e-104 347.7 0.1 8.8e-104 346.2 0.2 1.6 2 0 0 2 2 2 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.14 gi|336253427|ref|YP_004596534.1| - 4.3e-31 106.3 0.1 9.2e-31 105.2 0.0 1.6 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain AsnC_trans_reg PF01037.16 gi|336253428|ref|YP_004596535.1| - 3.5e-13 49.0 0.0 6.6e-13 48.1 0.0 1.5 1 0 0 1 1 1 1 AsnC family HTH_24 PF13412.1 gi|336253428|ref|YP_004596535.1| - 1e-10 40.7 0.0 2.3e-10 39.7 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|336253428|ref|YP_004596535.1| - 1.3e-07 31.1 0.1 2.5e-07 30.2 0.0 1.5 2 0 0 2 2 1 1 Bacterial regulatory protein, arsR family HTH_AsnC-type PF13404.1 gi|336253428|ref|YP_004596535.1| - 4e-07 29.4 0.2 6.8e-07 28.7 0.1 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_20 PF12840.2 gi|336253428|ref|YP_004596535.1| - 7.5e-07 28.8 0.1 1.4e-06 28.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|336253428|ref|YP_004596535.1| - 2.9e-06 26.8 0.0 7.9e-06 25.4 0.0 1.7 2 0 0 2 2 2 1 HTH domain HTH_DeoR PF08220.7 gi|336253428|ref|YP_004596535.1| - 5.3e-05 22.6 0.0 0.0002 20.8 0.0 1.8 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain TrmB PF01978.14 gi|336253428|ref|YP_004596535.1| - 5.4e-05 22.8 0.0 9.5e-05 22.0 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_28 PF13518.1 gi|336253428|ref|YP_004596535.1| - 8.3e-05 22.4 0.0 0.00014 21.8 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain GntR PF00392.16 gi|336253428|ref|YP_004596535.1| - 0.0014 18.0 0.0 0.0026 17.1 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_10 PF04967.7 gi|336253428|ref|YP_004596535.1| - 0.0025 17.3 0.0 0.005 16.4 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain HTH_IclR PF09339.5 gi|336253428|ref|YP_004596535.1| - 0.0034 16.9 0.0 0.0059 16.1 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|336253428|ref|YP_004596535.1| - 0.0044 16.6 0.0 0.0078 15.8 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|336253428|ref|YP_004596535.1| - 0.0056 16.3 0.0 0.013 15.2 0.0 1.5 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.14 gi|336253428|ref|YP_004596535.1| - 0.0097 15.8 0.0 0.019 14.8 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_36 PF13730.1 gi|336253428|ref|YP_004596535.1| - 0.011 15.8 0.0 0.017 15.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_41 PF14502.1 gi|336253428|ref|YP_004596535.1| - 0.025 14.1 0.0 0.054 13.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.1 gi|336253428|ref|YP_004596535.1| - 0.028 14.0 0.0 0.047 13.3 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain Mga PF05043.8 gi|336253428|ref|YP_004596535.1| - 0.05 13.8 0.0 0.13 12.6 0.0 1.6 2 0 0 2 2 1 0 Mga helix-turn-helix domain HTH_34 PF13601.1 gi|336253428|ref|YP_004596535.1| - 0.052 13.5 0.0 0.11 12.5 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_Tnp_ISL3 PF13542.1 gi|336253428|ref|YP_004596535.1| - 0.078 12.1 0.0 0.2 10.8 0.0 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 Rrf2 PF02082.15 gi|336253428|ref|YP_004596535.1| - 0.097 12.7 0.0 0.21 11.7 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator DUF4250 PF14056.1 gi|336253428|ref|YP_004596535.1| - 0.1 12.3 0.1 0.25 11.0 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4250) ABC_tran PF00005.22 gi|336253429|ref|YP_004596536.1| - 6.4e-36 123.6 0.0 1.2e-35 122.7 0.0 1.5 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.18 gi|336253429|ref|YP_004596536.1| - 2e-33 116.0 2.1 2.4e-33 115.7 1.4 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region Zeta_toxin PF06414.7 gi|336253429|ref|YP_004596536.1| - 0.00023 20.3 0.0 0.00062 18.9 0.0 1.7 1 0 0 1 1 1 1 Zeta toxin AAA_16 PF13191.1 gi|336253429|ref|YP_004596536.1| - 0.00038 20.4 0.7 0.00079 19.4 0.5 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.1 gi|336253429|ref|YP_004596536.1| - 0.00039 21.2 0.1 0.0013 19.5 0.1 2.0 1 0 0 1 1 1 1 AAA domain AAA_21 PF13304.1 gi|336253429|ref|YP_004596536.1| - 0.0007 19.6 0.0 0.027 14.4 0.0 2.2 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|336253429|ref|YP_004596536.1| - 0.0009 18.5 0.1 0.017 14.3 0.0 2.1 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|336253429|ref|YP_004596536.1| - 0.0016 18.5 0.3 0.012 15.6 0.2 2.2 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|336253429|ref|YP_004596536.1| - 0.0026 18.0 0.0 0.0094 16.2 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|336253429|ref|YP_004596536.1| - 0.0038 16.7 0.0 0.011 15.2 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|336253429|ref|YP_004596536.1| - 0.0041 16.3 0.0 0.0073 15.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_30 PF13604.1 gi|336253429|ref|YP_004596536.1| - 0.0056 16.2 1.7 0.052 13.1 0.6 2.6 2 1 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|336253429|ref|YP_004596536.1| - 0.02 14.3 0.1 0.12 11.8 0.0 2.0 1 1 0 2 2 2 0 AAA-like domain AAA_19 PF13245.1 gi|336253429|ref|YP_004596536.1| - 0.036 13.8 0.3 0.17 11.6 0.0 2.3 2 0 0 2 2 2 0 Part of AAA domain AAA PF00004.24 gi|336253429|ref|YP_004596536.1| - 0.047 13.8 0.0 0.57 10.3 0.0 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NTPase_1 PF03266.10 gi|336253429|ref|YP_004596536.1| - 0.047 13.3 0.0 1.8 8.2 0.0 2.4 1 1 0 1 1 1 0 NTPase AAA_33 PF13671.1 gi|336253429|ref|YP_004596536.1| - 0.069 13.0 0.0 0.17 11.7 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|336253429|ref|YP_004596536.1| - 0.1 12.8 0.0 0.19 12.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|336253429|ref|YP_004596536.1| - 0.11 12.4 0.0 0.56 10.1 0.0 2.2 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.18 gi|336253429|ref|YP_004596536.1| - 0.12 12.3 0.0 1 9.2 0.0 2.3 2 0 0 2 2 2 0 50S ribosome-binding GTPase Na_Ca_ex PF01699.19 gi|336253430|ref|YP_004596537.1| - 4e-20 71.8 30.4 5.4e-17 61.6 6.0 2.3 2 0 0 2 2 2 2 Sodium/calcium exchanger protein DUF4064 PF13273.1 gi|336253431|ref|YP_004596538.1| - 0.028 14.5 3.0 0.031 14.3 2.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4064) SdpI PF13630.1 gi|336253431|ref|YP_004596538.1| - 0.075 12.7 2.7 0.085 12.5 1.9 1.1 1 0 0 1 1 1 0 SdpI/YhfL protein family DUF308 PF03729.8 gi|336253431|ref|YP_004596538.1| - 0.27 11.2 7.6 1.3 9.1 5.5 1.8 1 1 0 1 1 1 0 Short repeat of unknown function (DUF308) DUF3955 PF13127.1 gi|336253431|ref|YP_004596538.1| - 0.31 10.6 2.5 2.4 7.7 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3955) PGPGW PF09656.5 gi|336253431|ref|YP_004596538.1| - 1.5 8.1 8.8 10 5.4 5.7 2.0 1 1 0 1 1 1 0 Putative transmembrane protein (PGPGW) NikR_C PF08753.6 gi|336253432|ref|YP_004596539.1| - 1.8e-13 50.1 0.1 2.8e-13 49.5 0.1 1.3 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.16 gi|336253432|ref|YP_004596539.1| - 0.019 14.8 0.0 0.028 14.3 0.0 1.3 1 0 0 1 1 1 0 Ribbon-helix-helix protein, copG family DUF2191 PF09957.4 gi|336253432|ref|YP_004596539.1| - 0.08 12.7 0.0 0.4 10.5 0.0 2.0 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2191) DUF3860 PF12976.2 gi|336253432|ref|YP_004596539.1| - 0.13 12.0 0.0 0.16 11.7 0.0 1.2 1 0 0 1 1 1 0 Domain of Unknown Function with PDB structure (DUF3860) NikR_C PF08753.6 gi|336253433|ref|YP_004596540.1| - 2e-17 62.8 0.2 2.6e-17 62.4 0.1 1.2 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.16 gi|336253433|ref|YP_004596540.1| - 6.9e-06 25.7 0.3 1.3e-05 24.8 0.0 1.6 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family cobW PF02492.14 gi|336253434|ref|YP_004596541.1| - 2.1e-47 160.8 0.0 2.7e-47 160.5 0.0 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain CobW_C PF07683.9 gi|336253434|ref|YP_004596541.1| - 2.1e-25 88.2 0.1 8.7e-25 86.2 0.1 2.0 1 1 0 1 1 1 1 Cobalamin synthesis protein cobW C-terminal domain GTP_EFTU PF00009.22 gi|336253434|ref|YP_004596541.1| - 0.0028 17.1 0.0 0.72 9.2 0.0 2.1 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain AAA_10 PF12846.2 gi|336253434|ref|YP_004596541.1| - 0.0096 15.3 0.0 0.026 13.9 0.0 1.6 1 1 1 2 2 2 1 AAA-like domain TrwB_AAD_bind PF10412.4 gi|336253434|ref|YP_004596541.1| - 0.013 14.1 0.0 0.019 13.6 0.0 1.1 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain T2SE PF00437.15 gi|336253434|ref|YP_004596541.1| - 0.023 13.6 0.1 0.036 12.9 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_22 PF13401.1 gi|336253434|ref|YP_004596541.1| - 0.058 13.5 0.0 0.15 12.2 0.0 1.7 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|336253434|ref|YP_004596541.1| - 0.07 12.2 0.0 0.12 11.4 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_19 PF13245.1 gi|336253434|ref|YP_004596541.1| - 0.072 12.8 0.1 0.15 11.7 0.1 1.5 1 0 0 1 1 1 0 Part of AAA domain TroA PF01297.12 gi|336253435|ref|YP_004596542.1| - 8.5e-56 189.0 0.1 1e-55 188.7 0.1 1.0 1 0 0 1 1 1 1 Periplasmic solute binding protein family Zip PF02535.17 gi|336253435|ref|YP_004596542.1| - 2.4 7.1 7.5 1.2 8.0 3.5 1.6 2 0 0 2 2 2 0 ZIP Zinc transporter TAT_signal PF10518.4 gi|336253435|ref|YP_004596542.1| - 3.8 7.7 6.9 0.12 12.4 0.6 1.8 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence CDC45 PF02724.9 gi|336253435|ref|YP_004596542.1| - 7.4 4.4 5.7 8.7 4.2 4.0 1.1 1 0 0 1 1 1 0 CDC45-like protein ABC_tran PF00005.22 gi|336253437|ref|YP_004596544.1| - 3.6e-32 111.5 0.0 4.9e-32 111.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|336253437|ref|YP_004596544.1| - 3.4e-11 43.6 0.0 4.5e-06 26.8 0.0 2.1 2 0 0 2 2 2 2 AAA domain SbcCD_C PF13558.1 gi|336253437|ref|YP_004596544.1| - 0.00021 21.1 0.5 0.0039 17.0 0.3 2.4 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit SMC_N PF02463.14 gi|336253437|ref|YP_004596544.1| - 0.00028 20.2 0.0 0.02 14.1 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|336253437|ref|YP_004596544.1| - 0.00037 20.8 0.0 0.00055 20.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|336253437|ref|YP_004596544.1| - 0.00048 19.5 0.0 0.00083 18.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|336253437|ref|YP_004596544.1| - 0.00075 19.5 0.2 0.0016 18.4 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.1 gi|336253437|ref|YP_004596544.1| - 0.0019 18.0 0.0 0.072 12.9 0.0 2.5 2 1 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|336253437|ref|YP_004596544.1| - 0.034 13.5 0.1 0.1 11.9 0.0 1.8 2 1 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|336253437|ref|YP_004596544.1| - 0.046 14.5 0.1 0.19 12.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain MobB PF03205.9 gi|336253437|ref|YP_004596544.1| - 0.056 13.1 0.0 0.14 11.9 0.0 1.7 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.1 gi|336253437|ref|YP_004596544.1| - 0.074 13.1 0.1 0.55 10.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain ArgK PF03308.11 gi|336253437|ref|YP_004596544.1| - 0.089 11.5 0.2 0.31 9.7 0.0 1.8 2 0 0 2 2 2 0 ArgK protein cobW PF02492.14 gi|336253437|ref|YP_004596544.1| - 0.11 11.8 0.1 0.22 10.9 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Dynamin_N PF00350.18 gi|336253437|ref|YP_004596544.1| - 0.12 12.1 0.0 0.19 11.5 0.0 1.3 1 0 0 1 1 1 0 Dynamin family MMR_HSR1 PF01926.18 gi|336253437|ref|YP_004596544.1| - 0.13 12.2 0.0 0.28 11.1 0.0 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase DUF258 PF03193.11 gi|336253437|ref|YP_004596544.1| - 0.14 11.3 0.0 0.19 10.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_10 PF12846.2 gi|336253437|ref|YP_004596544.1| - 0.14 11.5 0.1 0.26 10.6 0.0 1.4 1 1 0 1 1 1 0 AAA-like domain AAA_12 PF13087.1 gi|336253437|ref|YP_004596544.1| - 0.15 11.3 0.0 0.24 10.7 0.0 1.2 1 0 0 1 1 1 0 AAA domain ABC-3 PF00950.12 gi|336253438|ref|YP_004596545.1| - 1.6e-58 198.0 37.9 1.9e-58 197.7 26.3 1.0 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.13 gi|336253438|ref|YP_004596545.1| - 7.7e-06 24.9 37.2 7.7e-06 24.9 25.8 1.9 1 1 1 2 2 2 2 FecCD transport family Cpn60_TCP1 PF00118.19 gi|336253439|ref|YP_004596546.1| - 3.4e-154 514.0 5.2 3.9e-154 513.8 3.6 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family DUF4559 PF15112.1 gi|336253439|ref|YP_004596546.1| - 2.2 7.3 3.9 7.6 5.5 0.3 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4559) Epimerase PF01370.16 gi|336253440|ref|YP_004596547.1| - 5e-49 166.8 0.0 5.9e-49 166.6 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|336253440|ref|YP_004596547.1| - 1.5e-16 60.9 0.2 2.2e-16 60.3 0.2 1.3 1 0 0 1 1 1 1 NADH(P)-binding Polysacc_synt_2 PF02719.10 gi|336253440|ref|YP_004596547.1| - 6.8e-16 58.0 0.0 3.7e-15 55.5 0.0 1.9 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.12 gi|336253440|ref|YP_004596547.1| - 9.2e-16 57.5 0.0 1.1e-15 57.3 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|336253440|ref|YP_004596547.1| - 1.3e-13 50.2 0.0 1.5e-13 50.1 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.7 gi|336253440|ref|YP_004596547.1| - 4.2e-13 48.8 0.1 6.4e-08 31.8 0.0 2.3 1 1 1 2 2 2 2 Male sterility protein adh_short PF00106.20 gi|336253440|ref|YP_004596547.1| - 3.8e-06 26.9 4.3 1.3e-05 25.2 1.9 2.4 2 1 0 2 2 2 1 short chain dehydrogenase NmrA PF05368.8 gi|336253440|ref|YP_004596547.1| - 2e-05 23.9 0.1 0.00035 19.9 0.0 2.0 2 0 0 2 2 2 1 NmrA-like family KR PF08659.5 gi|336253440|ref|YP_004596547.1| - 0.0038 16.9 0.9 0.019 14.6 0.3 2.4 2 1 0 3 3 3 1 KR domain NAD_binding_7 PF13241.1 gi|336253440|ref|YP_004596547.1| - 0.0047 17.1 0.0 0.0089 16.2 0.0 1.5 1 0 0 1 1 1 1 Putative NAD(P)-binding Saccharop_dh PF03435.13 gi|336253440|ref|YP_004596547.1| - 0.006 15.6 0.5 0.0099 14.8 0.3 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase NAD_binding_3 PF03447.11 gi|336253440|ref|YP_004596547.1| - 0.0071 16.7 0.2 0.23 11.8 0.1 2.3 2 0 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|336253440|ref|YP_004596547.1| - 0.011 15.7 0.1 0.025 14.5 0.1 1.6 1 0 0 1 1 1 0 TrkA-N domain DFP PF04127.10 gi|336253440|ref|YP_004596547.1| - 0.012 15.1 0.1 0.025 14.1 0.1 1.5 1 0 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein NAD_binding_2 PF03446.10 gi|336253440|ref|YP_004596547.1| - 0.015 15.1 0.0 0.071 12.9 0.0 2.0 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.13 gi|336253440|ref|YP_004596547.1| - 0.018 14.7 0.1 0.03 13.9 0.1 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox PF00070.22 gi|336253440|ref|YP_004596547.1| - 0.024 15.0 0.1 0.063 13.6 0.1 1.8 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.9 gi|336253440|ref|YP_004596547.1| - 0.035 13.4 0.0 0.12 11.7 0.0 1.8 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Ldh_1_N PF00056.18 gi|336253440|ref|YP_004596547.1| - 0.036 13.9 0.1 0.054 13.3 0.1 1.3 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|336253440|ref|YP_004596547.1| - 0.075 13.4 0.1 0.21 12.0 0.1 1.9 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent UPF0104 PF03706.8 gi|336253441|ref|YP_004596548.1| - 5.3e-32 111.2 35.2 7.9e-32 110.7 24.4 1.3 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) RGP PF03214.8 gi|336253442|ref|YP_004596549.1| - 4.4e-17 61.8 0.0 5.7e-17 61.4 0.0 1.2 1 0 0 1 1 1 1 Reversibly glycosylated polypeptide SBP_bac_6 PF13343.1 gi|336253443|ref|YP_004596550.1| - 3.7e-15 55.9 0.1 4.8e-15 55.5 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|336253443|ref|YP_004596550.1| - 2.2e-08 34.1 4.0 3.1e-08 33.6 2.8 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|336253443|ref|YP_004596550.1| - 1.8e-07 31.2 7.0 4.5e-07 29.9 4.9 1.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|336253443|ref|YP_004596550.1| - 2.1e-06 27.5 1.5 2.9e-06 27.0 1.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.17 gi|336253444|ref|YP_004596551.1| - 9.4e-28 96.9 53.7 5.1e-15 55.4 8.5 3.8 2 2 1 3 3 3 3 Binding-protein-dependent transport system inner membrane component PMT_2 PF13231.1 gi|336253445|ref|YP_004596552.1| - 4.1e-16 59.2 12.9 4.1e-16 59.2 9.0 3.4 4 0 0 4 4 4 2 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT PF02366.13 gi|336253445|ref|YP_004596552.1| - 5.6e-05 22.6 7.4 5.6e-05 22.6 5.1 2.1 2 0 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Gluconate_2-dh3 PF13618.1 gi|336253446|ref|YP_004596553.1| - 4.7e-13 49.4 0.0 6.5e-13 48.9 0.0 1.2 1 0 0 1 1 1 1 Gluconate 2-dehydrogenase subunit 3 TAT_signal PF10518.4 gi|336253446|ref|YP_004596553.1| - 0.013 15.4 3.9 0.035 14.1 2.7 1.8 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Pentapeptide PF00805.17 gi|336253447|ref|YP_004596554.1| - 3.6e-16 57.9 16.0 5.9e-08 31.7 0.6 3.9 1 1 0 3 3 3 3 Pentapeptide repeats (8 copies) Pentapeptide_4 PF13599.1 gi|336253447|ref|YP_004596554.1| - 2.1e-14 53.0 1.4 1.9e-10 40.3 0.5 2.3 1 1 1 2 2 2 2 Pentapeptide repeats (9 copies) Ion_trans_2 PF07885.11 gi|336253447|ref|YP_004596554.1| - 2.5e-14 52.7 1.5 5e-14 51.7 1.0 1.6 1 1 0 1 1 1 1 Ion channel Pentapeptide_3 PF13576.1 gi|336253447|ref|YP_004596554.1| - 6.5e-11 41.9 6.5 6.5e-05 22.7 1.8 3.4 1 1 2 3 3 3 3 Pentapeptide repeats (9 copies) Ion_trans PF00520.26 gi|336253447|ref|YP_004596554.1| - 0.086 12.0 0.1 0.18 11.0 0.1 1.4 1 1 1 2 2 2 0 Ion transport protein DoxX PF07681.7 gi|336253448|ref|YP_004596555.1| - 9.5e-05 22.7 7.7 0.00016 22.0 5.3 1.3 1 0 0 1 1 1 1 DoxX HR_lesion PF05514.6 gi|336253448|ref|YP_004596555.1| - 0.0063 16.3 0.0 0.012 15.4 0.0 1.3 1 1 0 1 1 1 1 HR-like lesion-inducing DUF3681 PF12442.3 gi|336253448|ref|YP_004596555.1| - 0.016 15.3 1.2 0.11 12.6 0.8 2.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3681) DoxX_2 PF13564.1 gi|336253448|ref|YP_004596555.1| - 0.063 13.2 5.4 0.089 12.7 3.7 1.3 1 0 0 1 1 1 0 DoxX-like family Glycos_transf_2 PF00535.21 gi|336253449|ref|YP_004596556.1| - 6.2e-22 78.0 0.0 7.7e-22 77.7 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|336253449|ref|YP_004596556.1| - 1.5e-07 31.4 0.1 1.9e-07 31.1 0.1 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 GMC_oxred_C PF05199.8 gi|336253450|ref|YP_004596557.1| - 2.7e-22 79.5 0.2 9.3e-22 77.8 0.2 2.0 1 1 0 1 1 1 1 GMC oxidoreductase GMC_oxred_N PF00732.14 gi|336253450|ref|YP_004596557.1| - 1.5e-14 53.9 0.0 2.4e-14 53.1 0.0 1.4 1 0 0 1 1 1 1 GMC oxidoreductase FAD_binding_2 PF00890.19 gi|336253450|ref|YP_004596557.1| - 7.2e-09 34.9 0.6 0.0014 17.6 0.1 2.2 2 0 0 2 2 2 2 FAD binding domain DAO PF01266.19 gi|336253450|ref|YP_004596557.1| - 9.7e-09 34.5 0.7 0.00024 20.1 0.0 3.3 2 1 0 3 3 3 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|336253450|ref|YP_004596557.1| - 4.7e-07 29.1 1.2 0.00088 18.4 0.0 2.1 2 0 0 2 2 2 2 FAD binding domain Pyr_redox_2 PF07992.9 gi|336253450|ref|YP_004596557.1| - 5e-06 26.5 0.0 0.0018 18.1 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|336253450|ref|YP_004596557.1| - 6e-06 24.9 0.4 0.00063 18.3 0.2 2.1 2 0 0 2 2 2 1 HI0933-like protein NAD_binding_8 PF13450.1 gi|336253450|ref|YP_004596557.1| - 4.3e-05 23.4 0.3 0.00024 21.0 0.2 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.7 gi|336253450|ref|YP_004596557.1| - 0.00038 19.5 0.3 0.00056 18.9 0.2 1.2 1 0 0 1 1 1 1 Lycopene cyclase protein NAD_binding_10 PF13460.1 gi|336253450|ref|YP_004596557.1| - 0.0009 19.2 0.5 0.24 11.3 0.1 2.3 2 0 0 2 2 2 1 NADH(P)-binding ApbA PF02558.11 gi|336253450|ref|YP_004596557.1| - 0.0034 16.8 0.1 0.012 15.0 0.0 1.9 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA Pyr_redox_3 PF13738.1 gi|336253450|ref|YP_004596557.1| - 0.0068 16.4 0.1 0.054 13.5 0.0 2.3 3 0 0 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|336253450|ref|YP_004596557.1| - 0.013 15.1 0.0 0.024 14.2 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|336253450|ref|YP_004596557.1| - 0.019 14.9 0.0 0.2 11.6 0.0 2.4 2 0 0 2 2 2 0 TrkA-N domain Fer4_8 PF13183.1 gi|336253450|ref|YP_004596557.1| - 0.022 14.8 0.2 0.043 13.8 0.2 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|336253450|ref|YP_004596557.1| - 0.024 15.0 2.0 0.061 13.7 1.4 1.7 1 0 0 1 1 1 0 4Fe-4S dicluster domain F420_oxidored PF03807.12 gi|336253450|ref|YP_004596557.1| - 0.037 14.4 0.1 0.19 12.2 0.0 2.1 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent Pyr_redox PF00070.22 gi|336253450|ref|YP_004596557.1| - 0.038 14.3 0.2 0.23 11.9 0.0 2.4 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Fer4_18 PF13746.1 gi|336253450|ref|YP_004596557.1| - 0.038 14.4 0.2 0.092 13.1 0.1 1.6 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4 PF00037.22 gi|336253450|ref|YP_004596557.1| - 0.061 12.9 1.0 0.16 11.6 0.7 1.8 1 0 0 1 1 1 0 4Fe-4S binding domain Thi4 PF01946.12 gi|336253450|ref|YP_004596557.1| - 0.063 12.3 0.0 0.11 11.5 0.0 1.3 1 0 0 1 1 1 0 Thi4 family Fer4_10 PF13237.1 gi|336253450|ref|YP_004596557.1| - 0.086 12.6 0.2 0.18 11.6 0.1 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|336253450|ref|YP_004596557.1| - 0.086 12.7 0.6 0.17 11.7 0.4 1.4 1 0 0 1 1 1 0 4Fe-4S dicluster domain DUF159 PF02586.9 gi|336253451|ref|YP_004596558.1| - 1e-62 211.3 0.0 1.2e-62 211.1 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised ACR, COG2135 PUA PF01472.15 gi|336253452|ref|YP_004596559.1| - 6.2e-17 61.0 1.5 9.2e-17 60.5 1.0 1.3 1 0 0 1 1 1 1 PUA domain DUF3268 PF11672.3 gi|336253453|ref|YP_004596560.1| - 0.0069 16.4 0.3 0.0091 16.0 0.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3268) Terminase_GpA PF05876.7 gi|336253453|ref|YP_004596560.1| - 0.023 13.0 0.8 0.024 12.9 0.6 1.0 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) Tnp_zf-ribbon_2 PF13842.1 gi|336253453|ref|YP_004596560.1| - 0.034 14.5 4.8 0.29 11.5 0.4 2.2 2 0 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon DUF1930 PF09122.5 gi|336253453|ref|YP_004596560.1| - 0.044 13.5 0.0 0.069 12.9 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1930) DZR PF12773.2 gi|336253453|ref|YP_004596560.1| - 0.14 12.0 1.1 0.3 10.9 0.8 1.6 1 1 0 1 1 1 0 Double zinc ribbon Zn-ribbon_8 PF09723.5 gi|336253453|ref|YP_004596560.1| - 0.15 12.0 3.2 4.7 7.2 0.0 2.3 2 0 0 2 2 2 0 Zinc ribbon domain ABC2_membrane_2 PF12679.2 gi|336253454|ref|YP_004596561.1| - 2.5e-31 108.5 8.6 3.2e-31 108.2 5.9 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|336253454|ref|YP_004596561.1| - 4.3e-09 35.8 4.5 5.6e-09 35.5 3.1 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|336253454|ref|YP_004596561.1| - 8.1e-09 34.9 5.2 1.3e-08 34.3 3.6 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|336253454|ref|YP_004596561.1| - 2.1e-06 27.0 4.7 3e-06 26.5 3.3 1.2 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_5 PF13346.1 gi|336253454|ref|YP_004596561.1| - 4.1e-06 26.2 1.4 7.7e-06 25.3 1.0 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein Kinocilin PF15033.1 gi|336253454|ref|YP_004596561.1| - 0.05 13.1 5.3 0.1 12.1 3.7 1.5 1 0 0 1 1 1 0 Kinocilin protein Virul_fac_BrkB PF03631.10 gi|336253454|ref|YP_004596561.1| - 0.89 8.8 21.2 0.18 11.1 11.2 2.1 2 1 0 2 2 2 0 Virulence factor BrkB Colicin PF01024.14 gi|336253454|ref|YP_004596561.1| - 2.9 7.4 4.3 4.8 6.7 3.0 1.3 1 0 0 1 1 1 0 Colicin pore forming domain DUF1129 PF06570.6 gi|336253454|ref|YP_004596561.1| - 7.5 5.7 7.9 10 5.3 3.1 2.1 1 1 0 2 2 2 0 Protein of unknown function (DUF1129) ABC_tran PF00005.22 gi|336253455|ref|YP_004596562.1| - 1.6e-28 99.7 0.0 5.5e-28 97.9 0.0 1.8 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|336253455|ref|YP_004596562.1| - 5.3e-13 49.5 0.0 1.1e-08 35.4 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_10 PF12846.2 gi|336253455|ref|YP_004596562.1| - 0.00038 19.9 0.0 0.23 10.8 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain SMC_N PF02463.14 gi|336253455|ref|YP_004596562.1| - 0.0045 16.2 0.0 2.4 7.3 0.0 2.3 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|336253455|ref|YP_004596562.1| - 0.0045 16.4 0.0 0.0085 15.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF4162 PF13732.1 gi|336253455|ref|YP_004596562.1| - 0.0048 17.3 0.0 0.0087 16.5 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_23 PF13476.1 gi|336253455|ref|YP_004596562.1| - 0.009 16.3 0.0 0.013 15.7 0.0 1.1 1 0 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|336253455|ref|YP_004596562.1| - 0.021 14.0 0.0 0.032 13.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_25 PF13481.1 gi|336253455|ref|YP_004596562.1| - 0.039 13.3 2.9 0.6 9.4 0.1 2.7 1 1 1 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|336253455|ref|YP_004596562.1| - 0.065 12.8 0.1 0.24 10.9 0.0 2.0 2 1 0 2 2 2 0 AAA domain ArgK PF03308.11 gi|336253455|ref|YP_004596562.1| - 0.068 11.9 0.6 0.15 10.7 0.0 1.7 2 0 0 2 2 2 0 ArgK protein AAA_33 PF13671.1 gi|336253455|ref|YP_004596562.1| - 0.075 12.9 0.0 0.2 11.5 0.0 1.8 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|336253455|ref|YP_004596562.1| - 0.096 12.6 0.0 0.19 11.6 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase RNB PF00773.14 gi|336253456|ref|YP_004596563.1| - 9.3e-79 265.0 0.0 1.6e-76 257.6 0.0 2.2 1 1 0 1 1 1 1 RNB domain Acetyltransf_1 PF00583.19 gi|336253457|ref|YP_004596564.1| - 2e-11 43.7 0.0 3.1e-11 43.1 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|336253457|ref|YP_004596564.1| - 1.3e-06 28.5 0.0 6.3e-06 26.3 0.0 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|336253457|ref|YP_004596564.1| - 0.00014 21.7 0.0 0.00028 20.8 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|336253457|ref|YP_004596564.1| - 0.00016 21.7 0.0 0.00024 21.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|336253457|ref|YP_004596564.1| - 0.0006 19.7 0.0 0.00074 19.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|336253457|ref|YP_004596564.1| - 0.014 15.5 0.0 0.019 15.0 0.0 1.3 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|336253457|ref|YP_004596564.1| - 0.022 14.5 0.0 0.035 13.8 0.0 1.3 1 0 0 1 1 1 0 FR47-like protein Acetyltransf_1 PF00583.19 gi|336253458|ref|YP_004596565.1| - 1e-13 51.1 0.0 1.7e-13 50.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|336253458|ref|YP_004596565.1| - 0.00019 21.5 0.0 0.00023 21.2 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|336253458|ref|YP_004596565.1| - 0.00025 21.0 0.0 0.00033 20.6 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|336253458|ref|YP_004596565.1| - 0.0029 17.7 0.0 0.0037 17.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|336253458|ref|YP_004596565.1| - 0.0036 17.4 0.0 0.0098 16.0 0.0 1.8 1 1 1 2 2 2 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|336253458|ref|YP_004596565.1| - 0.0097 15.6 0.0 0.023 14.4 0.0 1.6 2 0 0 2 2 2 1 FR47-like protein DUF619 PF04768.8 gi|336253458|ref|YP_004596565.1| - 0.017 14.5 0.0 0.033 13.6 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF619) Acetyltransf_8 PF13523.1 gi|336253458|ref|YP_004596565.1| - 0.042 13.7 0.0 0.11 12.3 0.0 1.5 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Pyr_redox_2 PF07992.9 gi|336253459|ref|YP_004596566.1| - 1.5e-18 67.4 0.0 2.3e-18 66.8 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|336253459|ref|YP_004596566.1| - 1.4e-08 34.9 0.6 1e-07 32.2 0.0 2.5 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|336253459|ref|YP_004596566.1| - 4.5e-08 33.4 0.0 6.2e-06 26.4 0.0 2.7 3 1 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|336253459|ref|YP_004596566.1| - 6.3e-08 32.6 0.0 2.3e-07 30.8 0.0 1.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NAD_binding_9 PF13454.1 gi|336253459|ref|YP_004596566.1| - 0.00025 20.8 2.8 0.017 14.8 1.3 3.0 2 1 0 2 2 2 1 FAD-NAD(P)-binding GIDA PF01134.17 gi|336253459|ref|YP_004596566.1| - 0.091 11.5 0.0 1.4 7.6 0.0 2.1 2 0 0 2 2 2 0 Glucose inhibited division protein A PfkB PF00294.19 gi|336253461|ref|YP_004596568.1| - 2.8e-46 158.0 0.0 3.3e-46 157.8 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase RTC PF01137.16 gi|336253462|ref|YP_004596569.1| - 9.6e-66 220.8 0.0 1.2e-65 220.5 0.0 1.1 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.8 gi|336253462|ref|YP_004596569.1| - 4e-11 42.8 0.6 8.5e-11 41.7 0.2 1.7 2 0 0 2 2 2 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain tRNA-synt_1 PF00133.17 gi|336253464|ref|YP_004596571.1| - 3.3e-125 418.4 0.0 2.7e-124 415.3 0.0 1.9 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|336253464|ref|YP_004596571.1| - 1.4e-34 119.0 1.4 1.6e-34 118.8 0.1 1.7 2 0 0 2 2 2 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|336253464|ref|YP_004596571.1| - 3e-24 85.4 0.6 1.3e-11 43.7 0.0 3.5 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.1 gi|336253464|ref|YP_004596571.1| - 5.5e-07 29.0 0.0 1.2e-06 27.9 0.0 1.5 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.14 gi|336253464|ref|YP_004596571.1| - 9e-05 21.7 0.0 0.0051 15.9 0.0 2.4 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.13 gi|336253464|ref|YP_004596571.1| - 0.00049 18.8 0.0 0.0017 17.0 0.0 1.9 3 0 0 3 3 3 1 tRNA synthetases class I (K) SpecificRecomb PF10136.4 gi|336253464|ref|YP_004596571.1| - 0.57 8.1 0.0 0.83 7.6 0.0 1.1 1 0 0 1 1 1 0 Site-specific recombinase Lar_restr_allev PF14354.1 gi|336253464|ref|YP_004596571.1| - 0.69 10.2 3.6 44 4.4 0.0 3.2 2 1 0 2 2 2 0 Restriction alleviation protein Lar UPF0547 PF10571.4 gi|336253464|ref|YP_004596571.1| - 1.3 8.7 7.4 2 8.1 1.5 3.0 2 1 0 2 2 2 0 Uncharacterised protein family UPF0547 Zn-ribbon_8 PF09723.5 gi|336253464|ref|YP_004596571.1| - 3.2 7.7 6.7 19 5.3 2.9 2.9 2 1 0 2 2 2 0 Zinc ribbon domain RNase_H PF00075.19 gi|336253466|ref|YP_004596573.1| - 1.3e-10 41.7 0.0 1.9e-10 41.1 0.0 1.3 1 0 0 1 1 1 1 RNase H RVT_3 PF13456.1 gi|336253466|ref|YP_004596573.1| - 4.2e-06 26.4 0.0 8e-06 25.5 0.0 1.5 1 0 0 1 1 1 1 Reverse transcriptase-like PAS_4 PF08448.5 gi|336253467|ref|YP_004596574.1| - 3.6e-31 107.4 7.3 3e-14 52.9 0.2 3.9 3 1 0 3 3 3 3 PAS fold HATPase_c PF02518.21 gi|336253467|ref|YP_004596574.1| - 2.5e-30 104.4 0.1 8.8e-30 102.6 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|336253467|ref|YP_004596574.1| - 5.7e-28 97.3 0.4 5.6e-10 39.5 0.0 4.0 4 0 0 4 4 4 3 PAS domain PAS PF00989.19 gi|336253467|ref|YP_004596574.1| - 2.6e-13 49.7 1.6 8.1e-05 22.3 0.0 5.4 5 1 0 5 5 5 2 PAS fold HisKA PF00512.20 gi|336253467|ref|YP_004596574.1| - 2.5e-11 43.3 0.8 1.1e-10 41.3 0.1 2.6 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.1 gi|336253467|ref|YP_004596574.1| - 2.5e-11 42.9 0.1 0.00049 19.8 0.0 4.0 3 0 0 3 3 3 2 PAS domain PAS_3 PF08447.6 gi|336253467|ref|YP_004596574.1| - 4.5e-08 33.0 1.5 0.0022 18.0 0.0 5.0 5 0 0 5 5 5 1 PAS fold HATPase_c_2 PF13581.1 gi|336253467|ref|YP_004596574.1| - 0.00011 22.0 2.3 0.00015 21.5 0.1 2.4 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.1 gi|336253467|ref|YP_004596574.1| - 0.0057 16.3 0.0 0.012 15.3 0.0 1.5 1 0 0 1 1 1 1 GHKL domain A2M_N PF01835.14 gi|336253467|ref|YP_004596574.1| - 0.0059 16.8 0.1 0.036 14.3 0.0 2.2 2 0 0 2 2 2 1 MG2 domain HTH_11 PF08279.7 gi|336253467|ref|YP_004596574.1| - 0.051 13.2 0.0 0.16 11.6 0.0 1.8 1 0 0 1 1 1 0 HTH domain DUF1405 PF07187.6 gi|336253468|ref|YP_004596575.1| - 2e-46 157.7 18.5 2.7e-46 157.2 12.8 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1405) ADC PF06314.6 gi|336253469|ref|YP_004596576.1| - 1.2e-15 57.4 0.1 2.2e-15 56.6 0.0 1.3 1 0 0 1 1 1 1 Acetoacetate decarboxylase (ADC) SOR_SNZ PF01680.12 gi|336253470|ref|YP_004596577.1| - 4.1e-102 340.1 9.2 5.4e-102 339.7 6.4 1.1 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.9 gi|336253470|ref|YP_004596577.1| - 3.7e-10 39.3 6.0 7.1e-07 28.5 0.7 2.2 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG Dus PF01207.12 gi|336253470|ref|YP_004596577.1| - 0.00024 20.0 3.4 0.025 13.4 0.1 2.3 1 1 1 2 2 2 2 Dihydrouridine synthase (Dus) OMPdecase PF00215.19 gi|336253470|ref|YP_004596577.1| - 0.0012 18.3 0.2 0.6 9.4 0.0 2.4 1 1 1 2 2 2 2 Orotidine 5'-phosphate decarboxylase / HUMPS family IGPS PF00218.16 gi|336253470|ref|YP_004596577.1| - 0.0046 16.0 0.2 0.034 13.1 0.0 2.3 2 1 0 2 2 2 1 Indole-3-glycerol phosphate synthase NanE PF04131.9 gi|336253470|ref|YP_004596577.1| - 0.012 14.5 1.6 0.3 10.0 0.0 2.8 2 1 1 3 3 3 0 Putative N-acetylmannosamine-6-phosphate epimerase FMN_dh PF01070.13 gi|336253470|ref|YP_004596577.1| - 0.016 14.0 0.3 0.092 11.5 0.0 2.1 2 1 0 2 2 2 0 FMN-dependent dehydrogenase His_biosynth PF00977.16 gi|336253470|ref|YP_004596577.1| - 0.083 12.1 0.9 0.78 8.9 0.0 2.5 2 1 1 3 3 3 0 Histidine biosynthesis protein TMP-TENI PF02581.12 gi|336253470|ref|YP_004596577.1| - 0.085 11.9 1.1 0.52 9.4 0.1 2.2 2 0 0 2 2 2 0 Thiamine monophosphate synthase/TENI MttA_Hcf106 PF02416.11 gi|336253470|ref|YP_004596577.1| - 0.16 11.1 2.7 1.2 8.3 0.0 2.7 3 0 0 3 3 3 0 mttA/Hcf106 family zf-C2HC5 PF06221.8 gi|336253471|ref|YP_004596578.1| - 0.00013 21.5 0.6 0.00013 21.5 0.4 1.1 1 0 0 1 1 1 1 Putative zinc finger motif, C2HC5-type zinc_ribbon_2 PF13240.1 gi|336253471|ref|YP_004596578.1| - 0.00044 19.6 1.4 0.076 12.5 0.2 2.1 2 0 0 2 2 2 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|336253471|ref|YP_004596578.1| - 0.0034 16.5 2.4 0.34 10.1 0.5 2.2 1 1 1 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|336253471|ref|YP_004596578.1| - 0.0056 16.4 1.6 0.0088 15.8 1.1 1.4 1 1 0 1 1 1 1 Double zinc ribbon HypA PF01155.14 gi|336253471|ref|YP_004596578.1| - 0.0064 16.1 0.7 0.0068 16.0 0.5 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family DUF1272 PF06906.6 gi|336253471|ref|YP_004596578.1| - 0.0069 16.2 0.7 0.0072 16.1 0.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1272) Prok-RING_1 PF14446.1 gi|336253471|ref|YP_004596578.1| - 0.013 15.1 0.4 0.016 14.9 0.3 1.1 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 Zn-ribbon_8 PF09723.5 gi|336253471|ref|YP_004596578.1| - 0.014 15.2 3.8 0.054 13.4 2.6 1.8 1 1 0 1 1 1 0 Zinc ribbon domain YhfH PF14149.1 gi|336253471|ref|YP_004596578.1| - 0.02 14.6 1.6 1.3 8.8 0.1 2.1 1 1 1 2 2 2 0 YhfH-like protein zf-HIT PF04438.11 gi|336253471|ref|YP_004596578.1| - 0.045 13.4 0.9 0.88 9.2 0.0 2.1 2 0 0 2 2 2 0 HIT zinc finger Sgf11 PF08209.6 gi|336253471|ref|YP_004596578.1| - 0.057 12.7 1.0 0.73 9.2 0.0 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zf-RING_3 PF14369.1 gi|336253471|ref|YP_004596578.1| - 0.059 13.3 1.7 0.13 12.3 1.2 1.6 1 1 1 2 2 2 0 zinc-finger RNHCP PF12647.2 gi|336253471|ref|YP_004596578.1| - 0.061 13.1 0.4 0.083 12.7 0.3 1.3 1 0 0 1 1 1 0 RNHCP domain zf-C4_Topoisom PF01396.14 gi|336253471|ref|YP_004596578.1| - 0.062 12.8 0.8 0.19 11.2 0.1 1.9 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger OrfB_Zn_ribbon PF07282.6 gi|336253471|ref|YP_004596578.1| - 0.084 12.5 0.8 0.1 12.2 0.6 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-UBR PF02207.15 gi|336253471|ref|YP_004596578.1| - 0.085 12.5 0.3 0.094 12.4 0.2 1.1 1 0 0 1 1 1 0 Putative zinc finger in N-recognin (UBR box) PolC_DP2 PF03833.8 gi|336253471|ref|YP_004596578.1| - 0.088 10.4 0.3 0.099 10.2 0.2 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 zf-FPG_IleRS PF06827.9 gi|336253471|ref|YP_004596578.1| - 0.15 11.7 2.0 1.3 8.7 1.9 1.9 1 1 1 2 2 2 0 Zinc finger found in FPG and IleRS DNA_RNApol_7kD PF03604.8 gi|336253471|ref|YP_004596578.1| - 0.16 11.4 1.6 0.34 10.4 1.1 1.6 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-CCHC_5 PF14787.1 gi|336253471|ref|YP_004596578.1| - 0.21 11.0 3.3 8.1 6.0 0.2 2.1 2 0 0 2 2 2 0 GAG-polyprotein viral zinc-finger zf-dskA_traR PF01258.12 gi|336253471|ref|YP_004596578.1| - 0.38 10.5 3.9 8.2 6.2 0.6 2.1 1 1 1 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger DUF1610 PF07754.6 gi|336253471|ref|YP_004596578.1| - 0.42 10.7 3.9 2.8 8.1 0.5 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf-CSL PF05207.8 gi|336253471|ref|YP_004596578.1| - 0.42 10.1 2.6 2.4 7.7 1.8 1.9 1 1 0 1 1 1 0 CSL zinc finger zf-C2H2_6 PF13912.1 gi|336253471|ref|YP_004596578.1| - 0.5 10.3 1.9 2.1 8.3 0.1 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger Nudix_N_2 PF14803.1 gi|336253471|ref|YP_004596578.1| - 0.66 9.7 2.9 5.1 6.8 0.2 2.1 2 0 0 2 2 2 0 Nudix N-terminal UPF0547 PF10571.4 gi|336253471|ref|YP_004596578.1| - 1.7 8.4 4.0 3.5 7.3 0.7 1.9 1 1 1 2 2 2 0 Uncharacterised protein family UPF0547 Zn_Tnp_IS1595 PF12760.2 gi|336253471|ref|YP_004596578.1| - 4.1 7.2 5.4 16 5.4 0.2 2.1 1 1 0 2 2 2 0 Transposase zinc-ribbon domain ELFV_dehydrog PF00208.16 gi|336253472|ref|YP_004596579.1| - 2.8e-71 239.9 0.1 4.1e-71 239.4 0.1 1.2 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.13 gi|336253472|ref|YP_004596579.1| - 1.5e-52 176.5 0.0 2.6e-52 175.8 0.0 1.4 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.14 gi|336253472|ref|YP_004596579.1| - 0.00082 18.5 0.0 0.0015 17.7 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.16 gi|336253472|ref|YP_004596579.1| - 0.0096 15.5 0.3 0.029 13.9 0.0 1.9 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain Bac_GDH PF05088.7 gi|336253472|ref|YP_004596579.1| - 0.014 12.8 0.1 0.035 11.5 0.0 1.5 2 0 0 2 2 2 0 Bacterial NAD-glutamate dehydrogenase GDPD_2 PF13653.1 gi|336253472|ref|YP_004596579.1| - 0.084 13.0 0.0 0.29 11.3 0.0 1.9 1 0 0 1 1 1 0 Glycerophosphoryl diester phosphodiesterase family IncA PF04156.9 gi|336253473|ref|YP_004596580.1| - 0.0051 16.4 3.7 0.0051 16.4 2.5 1.8 2 0 0 2 2 2 1 IncA protein ATP_synt_I PF03899.10 gi|336253473|ref|YP_004596580.1| - 0.016 15.3 2.7 0.016 15.3 1.8 2.0 2 0 0 2 2 2 0 ATP synthase I chain Ni_hydr_CYTB PF01292.15 gi|336253473|ref|YP_004596580.1| - 0.22 10.9 3.5 0.39 10.0 2.4 1.4 1 1 0 1 1 1 0 Prokaryotic cytochrome b561 DUF2628 PF10947.3 gi|336253473|ref|YP_004596580.1| - 0.49 10.2 5.0 0.75 9.6 3.5 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2628) Tic20 PF09685.5 gi|336253473|ref|YP_004596580.1| - 1.8 8.5 6.0 2.9 7.9 4.0 1.4 1 1 0 1 1 1 0 Tic20-like protein GHMP_kinases_N PF00288.21 gi|336253474|ref|YP_004596581.1| - 1.6e-15 56.8 1.1 1.6e-15 56.8 0.8 1.9 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|336253474|ref|YP_004596581.1| - 9.9e-08 32.0 0.0 2.2e-07 30.9 0.0 1.6 1 0 0 1 1 1 1 GHMP kinases C terminal FlpD PF02662.11 gi|336253474|ref|YP_004596581.1| - 0.11 12.2 0.1 0.2 11.3 0.1 1.4 1 0 0 1 1 1 0 Methyl-viologen-reducing hydrogenase, delta subunit MFS_1 PF07690.11 gi|336253475|ref|YP_004596582.1| - 5.8e-31 107.4 62.7 4.1e-30 104.6 25.4 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF3274 PF11678.3 gi|336253476|ref|YP_004596583.1| - 0.063 12.4 0.5 0.12 11.5 0.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3274) Pyr_redox_2 PF07992.9 gi|336253477|ref|YP_004596584.1| - 1.3e-33 116.5 0.1 1.8e-33 116.1 0.1 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|336253477|ref|YP_004596584.1| - 8.5e-12 45.3 0.7 4.1e-06 27.1 0.0 3.4 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|336253477|ref|YP_004596584.1| - 4.4e-06 26.9 2.1 0.0035 17.4 1.0 3.5 3 1 1 4 4 4 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|336253477|ref|YP_004596584.1| - 0.0011 17.4 0.1 0.063 11.7 0.0 3.0 3 1 1 4 4 4 1 HI0933-like protein DAO PF01266.19 gi|336253477|ref|YP_004596584.1| - 0.0015 17.4 5.9 0.32 9.8 0.0 3.7 4 0 0 4 4 4 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|336253477|ref|YP_004596584.1| - 0.0033 17.4 3.1 0.072 13.1 0.0 3.2 3 1 0 3 3 3 1 NAD(P)-binding Rossmann-like domain NAD_binding_9 PF13454.1 gi|336253477|ref|YP_004596584.1| - 0.0095 15.7 3.8 1.2 8.8 0.0 2.9 3 0 0 3 3 3 2 FAD-NAD(P)-binding Lycopene_cycl PF05834.7 gi|336253477|ref|YP_004596584.1| - 0.29 9.9 2.1 1.7 7.4 0.0 2.6 3 0 0 3 3 3 0 Lycopene cyclase protein NrfD PF03916.9 gi|336253478|ref|YP_004596585.1| - 1.6e-20 73.8 21.2 1.6e-20 73.8 14.7 1.8 2 0 0 2 2 2 1 Polysulphide reductase, NrfD RHH_1 PF01402.16 gi|336253479|ref|YP_004596586.1| - 0.016 15.1 0.4 0.036 13.9 0.3 1.6 1 1 0 1 1 1 0 Ribbon-helix-helix protein, copG family Pex19 PF04614.7 gi|336253479|ref|YP_004596586.1| - 0.09 12.3 0.0 0.09 12.3 0.0 1.0 1 0 0 1 1 1 0 Pex19 protein family YihI PF04220.7 gi|336253480|ref|YP_004596587.1| - 0.064 12.5 0.0 0.075 12.3 0.0 1.1 1 0 0 1 1 1 0 Der GTPase activator (YihI) CheD PF03975.8 gi|336253481|ref|YP_004596588.1| - 4.8e-26 90.7 0.0 6.2e-26 90.4 0.0 1.1 1 0 0 1 1 1 1 CheD chemotactic sensory transduction Aminotran_5 PF00266.14 gi|336253482|ref|YP_004596589.1| - 1.4e-58 198.3 0.0 1.8e-58 198.0 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V A2L_zn_ribbon PF08792.5 gi|336253483|ref|YP_004596590.1| - 0.54 9.7 3.0 1.5 8.3 0.5 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain Spc7 PF08317.6 gi|336253484|ref|YP_004596591.1| - 0.0016 17.1 0.7 0.002 16.8 0.5 1.1 1 0 0 1 1 1 1 Spc7 kinetochore protein Med10 PF09748.4 gi|336253484|ref|YP_004596591.1| - 0.0023 17.7 0.0 0.028 14.2 0.0 2.1 2 0 0 2 2 2 1 Transcription factor subunit Med10 of Mediator complex TMF_TATA_bd PF12325.3 gi|336253484|ref|YP_004596591.1| - 0.0085 15.8 3.4 0.0085 15.8 2.4 2.2 2 0 0 2 2 2 1 TATA element modulatory factor 1 TATA binding Erp_C PF06780.6 gi|336253484|ref|YP_004596591.1| - 0.018 14.8 0.4 0.031 14.0 0.2 1.5 1 1 0 1 1 1 0 Erp protein C-terminus DUF948 PF06103.6 gi|336253484|ref|YP_004596591.1| - 0.031 14.1 1.1 0.23 11.3 0.0 2.2 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) HeLo PF14479.1 gi|336253484|ref|YP_004596591.1| - 0.033 13.9 2.0 0.044 13.5 1.4 1.3 1 0 0 1 1 1 0 Prion-inhibition and propagation Rootletin PF15035.1 gi|336253484|ref|YP_004596591.1| - 0.048 13.6 2.3 0.065 13.2 1.6 1.3 1 0 0 1 1 1 0 Ciliary rootlet component, centrosome cohesion DUF342 PF03961.8 gi|336253484|ref|YP_004596591.1| - 0.085 11.2 0.3 0.12 10.7 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF342) SIMPL PF04402.9 gi|336253484|ref|YP_004596591.1| - 0.15 11.9 11.0 1.6 8.5 7.9 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF541) DUF848 PF05852.6 gi|336253484|ref|YP_004596591.1| - 0.28 11.0 7.7 0.72 9.7 0.2 2.1 1 1 1 2 2 2 0 Gammaherpesvirus protein of unknown function (DUF848) Pup PF05639.6 gi|336253484|ref|YP_004596591.1| - 0.45 11.0 0.1 0.45 11.0 0.1 3.1 1 1 2 3 3 3 0 Pup-like protein DUF4407 PF14362.1 gi|336253484|ref|YP_004596591.1| - 2.1 7.2 7.8 2.7 6.8 5.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) FlgN PF05130.7 gi|336253484|ref|YP_004596591.1| - 4.1 7.6 11.6 1.9 8.7 3.8 2.1 1 1 1 2 2 2 0 FlgN protein Osmo_CC PF08946.5 gi|336253484|ref|YP_004596591.1| - 4.6 7.3 6.6 25 4.9 0.7 2.6 2 0 0 2 2 2 0 Osmosensory transporter coiled coil ARGLU PF15346.1 gi|336253484|ref|YP_004596591.1| - 5.6 6.7 10.4 1.5 8.5 0.1 2.4 1 1 1 2 2 2 0 Arginine and glutamate-rich 1 FUSC PF04632.7 gi|336253484|ref|YP_004596591.1| - 5.6 5.2 7.0 6.8 4.9 4.9 1.1 1 0 0 1 1 1 0 Fusaric acid resistance protein family DUF3073 PF11273.3 gi|336253484|ref|YP_004596591.1| - 7.4 7.1 7.2 1.8 9.1 1.7 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF3073) IncA PF04156.9 gi|336253484|ref|YP_004596591.1| - 8.4 5.9 7.6 56 3.2 5.3 2.0 1 1 0 1 1 1 0 IncA protein ABC_tran PF00005.22 gi|336253485|ref|YP_004596592.1| - 4.6e-22 78.7 0.0 1e-11 45.3 0.0 4.2 3 2 0 3 3 3 3 ABC transporter SMC_N PF02463.14 gi|336253485|ref|YP_004596592.1| - 2.8e-12 46.3 0.1 0.017 14.3 0.1 4.1 3 1 0 3 3 3 3 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|336253485|ref|YP_004596592.1| - 5.1e-10 39.7 4.7 0.0047 16.9 0.0 4.3 4 0 0 4 4 4 3 AAA domain AAA_29 PF13555.1 gi|336253485|ref|YP_004596592.1| - 8.9e-09 34.7 0.0 0.0022 17.4 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|336253485|ref|YP_004596592.1| - 2e-07 31.1 0.1 0.0039 17.1 0.0 3.4 4 0 0 4 4 3 2 AAA ATPase domain AAA_22 PF13401.1 gi|336253485|ref|YP_004596592.1| - 9.2e-07 29.0 0.6 0.11 12.5 0.0 4.0 4 0 0 4 4 4 2 AAA domain AAA_25 PF13481.1 gi|336253485|ref|YP_004596592.1| - 2.3e-06 27.1 0.0 0.11 11.8 0.0 3.5 3 0 0 3 3 3 2 AAA domain AAA_14 PF13173.1 gi|336253485|ref|YP_004596592.1| - 9.1e-06 25.5 0.0 0.065 13.1 0.0 3.5 4 0 0 4 4 3 2 AAA domain DnaJ_CXXCXGXG PF00684.14 gi|336253485|ref|YP_004596592.1| - 9.1e-05 22.4 10.6 0.0031 17.5 0.7 3.7 4 0 0 4 4 3 1 DnaJ central domain AAA_18 PF13238.1 gi|336253485|ref|YP_004596592.1| - 0.00013 22.2 3.4 0.51 10.6 0.0 4.3 4 0 0 4 4 3 1 AAA domain KaiC PF06745.8 gi|336253485|ref|YP_004596592.1| - 0.00015 21.0 0.1 0.094 11.8 0.0 2.8 3 0 0 3 3 3 1 KaiC AAA_23 PF13476.1 gi|336253485|ref|YP_004596592.1| - 0.00025 21.4 0.0 0.84 9.9 0.0 2.8 2 0 0 2 2 2 2 AAA domain DUF258 PF03193.11 gi|336253485|ref|YP_004596592.1| - 0.00027 20.1 0.0 0.53 9.4 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA_33 PF13671.1 gi|336253485|ref|YP_004596592.1| - 0.00037 20.3 0.2 0.98 9.2 0.0 3.5 4 0 0 4 4 4 1 AAA domain AAA_10 PF12846.2 gi|336253485|ref|YP_004596592.1| - 0.00043 19.8 8.1 0.023 14.1 0.0 3.7 4 1 0 4 4 3 1 AAA-like domain cobW PF02492.14 gi|336253485|ref|YP_004596592.1| - 0.00084 18.8 0.1 0.073 12.5 0.0 2.4 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain APS_kinase PF01583.15 gi|336253485|ref|YP_004596592.1| - 0.0011 18.6 0.1 1.1 8.9 0.0 2.6 2 0 0 2 2 2 1 Adenylylsulphate kinase AAA_15 PF13175.1 gi|336253485|ref|YP_004596592.1| - 0.0013 17.8 0.0 0.97 8.4 0.0 2.9 4 0 0 4 4 4 1 AAA ATPase domain Viral_helicase1 PF01443.13 gi|336253485|ref|YP_004596592.1| - 0.0066 15.9 0.0 0.38 10.2 0.0 2.4 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase DUF2075 PF09848.4 gi|336253485|ref|YP_004596592.1| - 0.011 14.6 0.1 2.9 6.7 0.0 2.3 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) Arch_ATPase PF01637.13 gi|336253485|ref|YP_004596592.1| - 0.012 15.3 0.0 5 6.7 0.0 2.6 2 0 0 2 2 2 0 Archaeal ATPase NACHT PF05729.7 gi|336253485|ref|YP_004596592.1| - 0.015 14.9 0.0 0.71 9.5 0.0 2.4 2 0 0 2 2 2 0 NACHT domain MobB PF03205.9 gi|336253485|ref|YP_004596592.1| - 0.016 14.9 0.1 0.7 9.5 0.0 2.7 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_17 PF13207.1 gi|336253485|ref|YP_004596592.1| - 0.017 15.9 14.3 0.23 12.2 0.0 5.1 6 1 0 6 6 5 0 AAA domain MMR_HSR1 PF01926.18 gi|336253485|ref|YP_004596592.1| - 0.049 13.5 0.0 6 6.8 0.0 3.4 3 0 0 3 3 3 0 50S ribosome-binding GTPase RNA_helicase PF00910.17 gi|336253485|ref|YP_004596592.1| - 0.083 13.0 0.1 3.1 8.0 0.0 2.3 2 0 0 2 2 2 0 RNA helicase FtsK_SpoIIIE PF01580.13 gi|336253485|ref|YP_004596592.1| - 0.092 12.2 0.1 1.8 7.9 0.0 2.8 3 0 0 3 3 3 0 FtsK/SpoIIIE family Pilus_CpaD PF09476.5 gi|336253485|ref|YP_004596592.1| - 0.12 11.8 0.0 2.6 7.4 0.0 2.9 3 0 0 3 3 3 0 Pilus biogenesis CpaD protein (pilus_cpaD) Miro PF08477.8 gi|336253485|ref|YP_004596592.1| - 0.14 12.6 0.0 19 5.7 0.0 2.7 2 0 0 2 2 2 0 Miro-like protein NB-ARC PF00931.17 gi|336253485|ref|YP_004596592.1| - 0.19 10.5 0.0 2.4 6.9 0.0 2.6 3 0 0 3 3 2 0 NB-ARC domain AAA_19 PF13245.1 gi|336253485|ref|YP_004596592.1| - 0.19 11.5 1.2 24 4.7 0.0 3.1 3 0 0 3 3 2 0 Part of AAA domain ATP_bind_1 PF03029.12 gi|336253485|ref|YP_004596592.1| - 0.35 10.3 0.9 12 5.3 0.0 3.0 3 0 0 3 3 3 0 Conserved hypothetical ATP binding protein Zn-ribbon_8 PF09723.5 gi|336253485|ref|YP_004596592.1| - 0.36 10.8 16.5 19 5.2 0.1 4.6 4 0 0 4 4 4 0 Zinc ribbon domain HypA PF01155.14 gi|336253485|ref|YP_004596592.1| - 0.38 10.4 5.3 5.9 6.6 0.1 3.6 4 0 0 4 4 4 0 Hydrogenase expression/synthesis hypA family Zn_Tnp_IS91 PF14319.1 gi|336253485|ref|YP_004596592.1| - 0.62 9.5 1.6 2.1 7.8 0.0 2.6 3 0 0 3 3 2 0 Transposase zinc-binding domain DUF87 PF01935.12 gi|336253485|ref|YP_004596592.1| - 0.87 9.3 0.0 0.87 9.3 0.0 2.9 4 0 0 4 4 3 0 Domain of unknown function DUF87 DZR PF12773.2 gi|336253485|ref|YP_004596592.1| - 2.2 8.1 10.2 4.5 7.1 0.3 3.9 4 0 0 4 4 4 0 Double zinc ribbon YhfH PF14149.1 gi|336253485|ref|YP_004596592.1| - 3.9 7.3 6.3 9.7 6.0 0.0 3.5 3 0 0 3 3 3 0 YhfH-like protein Methyltransf_11 PF08241.7 gi|336253486|ref|YP_004596593.1| - 7.2e-22 77.6 0.0 1.3e-21 76.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|336253486|ref|YP_004596593.1| - 1.2e-21 76.9 0.0 1.5e-21 76.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|336253486|ref|YP_004596593.1| - 4.4e-20 72.0 0.1 6.8e-20 71.4 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|336253486|ref|YP_004596593.1| - 2.1e-17 63.7 0.1 3.9e-17 62.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|336253486|ref|YP_004596593.1| - 1.9e-15 57.1 0.0 3.3e-15 56.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|336253486|ref|YP_004596593.1| - 3.7e-14 52.9 0.1 5.9e-14 52.2 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|336253486|ref|YP_004596593.1| - 9.9e-13 48.1 0.1 1.8e-12 47.3 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|336253486|ref|YP_004596593.1| - 5.6e-10 38.7 0.0 7.8e-10 38.2 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MetW PF07021.7 gi|336253486|ref|YP_004596593.1| - 1.5e-07 31.0 0.0 2e-07 30.5 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW CMAS PF02353.15 gi|336253486|ref|YP_004596593.1| - 1.1e-06 27.9 0.0 1e-05 24.8 0.0 1.9 2 0 0 2 2 2 1 Mycolic acid cyclopropane synthetase Methyltransf_9 PF08003.6 gi|336253486|ref|YP_004596593.1| - 1.6e-06 27.0 0.0 2.2e-06 26.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) TPMT PF05724.6 gi|336253486|ref|YP_004596593.1| - 8.5e-06 25.3 0.0 1.3e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) DREV PF05219.7 gi|336253486|ref|YP_004596593.1| - 0.00019 20.4 0.0 0.00026 19.9 0.0 1.2 1 0 0 1 1 1 1 DREV methyltransferase NodS PF05401.6 gi|336253486|ref|YP_004596593.1| - 0.00021 20.7 0.0 0.00029 20.2 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_4 PF02390.12 gi|336253486|ref|YP_004596593.1| - 0.00032 19.8 0.0 0.075 12.0 0.0 2.1 2 0 0 2 2 2 1 Putative methyltransferase Methyltransf_32 PF13679.1 gi|336253486|ref|YP_004596593.1| - 0.00033 20.3 0.2 0.00053 19.6 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_29 PF03141.11 gi|336253486|ref|YP_004596593.1| - 0.0015 16.9 0.0 0.0027 16.0 0.0 1.3 1 1 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase MTS PF05175.9 gi|336253486|ref|YP_004596593.1| - 0.0015 17.9 0.0 0.0027 17.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain TehB PF03848.9 gi|336253486|ref|YP_004596593.1| - 0.0095 15.1 0.0 0.013 14.7 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_24 PF13578.1 gi|336253486|ref|YP_004596593.1| - 0.011 16.5 0.2 0.033 15.0 0.0 1.9 2 0 0 2 2 1 0 Methyltransferase domain CheR PF01739.13 gi|336253486|ref|YP_004596593.1| - 0.011 14.9 0.0 1.4 8.1 0.0 2.4 1 1 1 2 2 2 0 CheR methyltransferase, SAM binding domain FtsJ PF01728.14 gi|336253486|ref|YP_004596593.1| - 0.029 14.3 0.0 0.038 13.9 0.0 1.3 1 0 0 1 1 1 0 FtsJ-like methyltransferase Methyltransf_8 PF05148.10 gi|336253486|ref|YP_004596593.1| - 0.032 13.8 0.0 0.078 12.5 0.0 1.6 1 1 0 1 1 1 0 Hypothetical methyltransferase PCMT PF01135.14 gi|336253486|ref|YP_004596593.1| - 0.055 12.9 0.0 0.096 12.2 0.0 1.3 2 0 0 2 2 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) BNR PF02012.15 gi|336253487|ref|YP_004596594.1| - 5e-09 34.6 7.2 0.61 10.1 0.1 5.9 5 0 0 5 5 5 4 BNR/Asp-box repeat PSII_BNR PF14870.1 gi|336253487|ref|YP_004596594.1| - 0.00013 21.1 0.5 0.43 9.5 0.0 3.4 2 1 2 4 4 4 2 Photosynthesis system II assembly factor YCF48 PQQ_3 PF13570.1 gi|336253487|ref|YP_004596594.1| - 0.077 13.3 3.9 19 5.6 0.1 4.6 5 0 0 5 5 5 0 PQQ-like domain MatE PF01554.13 gi|336253489|ref|YP_004596596.1| - 0.013 15.1 2.0 0.013 15.1 1.4 1.5 1 1 0 1 1 1 0 MatE DUF1469 PF07332.6 gi|336253489|ref|YP_004596596.1| - 1.1 8.9 14.7 13 5.5 10.2 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF1469) Ribosomal_S24e PF01282.14 gi|336253490|ref|YP_004596597.1| - 1.3e-26 92.2 0.7 1.6e-26 91.8 0.5 1.1 1 0 0 1 1 1 1 Ribosomal protein S24e ThiF PF00899.16 gi|336253490|ref|YP_004596597.1| - 0.076 12.8 0.3 0.12 12.2 0.2 1.3 1 0 0 1 1 1 0 ThiF family Ribosomal_S27 PF01599.14 gi|336253491|ref|YP_004596598.1| - 7.7e-12 44.8 3.8 9e-12 44.6 2.6 1.1 1 0 0 1 1 1 1 Ribosomal protein S27a RNA_POL_M_15KD PF02150.11 gi|336253491|ref|YP_004596598.1| - 0.0078 15.8 1.3 0.012 15.2 0.9 1.3 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit FYVE PF01363.16 gi|336253491|ref|YP_004596598.1| - 0.014 15.3 1.2 0.015 15.1 0.8 1.1 1 0 0 1 1 1 0 FYVE zinc finger DZR PF12773.2 gi|336253491|ref|YP_004596598.1| - 0.019 14.7 1.0 0.025 14.3 0.7 1.2 1 0 0 1 1 1 0 Double zinc ribbon Ribosomal_L37e PF01907.14 gi|336253491|ref|YP_004596598.1| - 0.024 14.4 1.1 0.029 14.1 0.7 1.2 1 0 0 1 1 1 0 Ribosomal protein L37e IBR PF01485.16 gi|336253491|ref|YP_004596598.1| - 0.037 13.9 0.6 0.038 13.8 0.4 1.1 1 0 0 1 1 1 0 IBR domain zinc-ribbons_6 PF07191.7 gi|336253491|ref|YP_004596598.1| - 0.067 12.9 1.3 0.085 12.6 0.9 1.1 1 0 0 1 1 1 0 zinc-ribbons zf-RING_3 PF14369.1 gi|336253491|ref|YP_004596598.1| - 0.077 13.0 0.5 0.077 13.0 0.3 1.6 1 1 0 1 1 1 0 zinc-finger NCD3G PF07562.9 gi|336253491|ref|YP_004596598.1| - 0.11 12.2 1.4 0.14 11.9 1.0 1.3 1 0 0 1 1 1 0 Nine Cysteines Domain of family 3 GPCR A2L_zn_ribbon PF08792.5 gi|336253491|ref|YP_004596598.1| - 0.13 11.7 1.6 2.7 7.5 0.0 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|336253491|ref|YP_004596598.1| - 0.15 11.6 2.8 0.83 9.2 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain RNHCP PF12647.2 gi|336253491|ref|YP_004596598.1| - 0.18 11.6 3.6 0.45 10.3 2.6 1.6 1 1 0 1 1 1 0 RNHCP domain Fer4_6 PF12837.2 gi|336253491|ref|YP_004596598.1| - 0.36 10.7 4.7 1.8 8.5 0.4 2.1 2 0 0 2 2 2 0 4Fe-4S binding domain zf-C4_Topoisom PF01396.14 gi|336253491|ref|YP_004596598.1| - 0.43 10.1 2.6 2.3 7.8 1.8 2.0 1 1 0 1 1 1 0 Topoisomerase DNA binding C4 zinc finger zf-C2HC_2 PF13913.1 gi|336253491|ref|YP_004596598.1| - 0.45 10.2 2.8 0.52 10.0 0.1 2.2 2 0 0 2 2 2 0 zinc-finger of a C2HC-type TF_Zn_Ribbon PF08271.7 gi|336253491|ref|YP_004596598.1| - 0.56 9.5 3.7 0.73 9.2 1.9 1.8 1 1 1 2 2 2 0 TFIIB zinc-binding zf-CSL PF05207.8 gi|336253491|ref|YP_004596598.1| - 0.59 9.6 4.5 1.7 8.2 3.1 1.7 1 1 0 1 1 1 0 CSL zinc finger zinc_ribbon_5 PF13719.1 gi|336253491|ref|YP_004596598.1| - 0.67 9.5 4.1 17 5.0 2.9 2.1 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|336253491|ref|YP_004596598.1| - 0.87 9.3 4.3 2.4 7.9 0.2 2.1 1 1 1 2 2 2 0 zinc-ribbon domain Nudix_N_2 PF14803.1 gi|336253491|ref|YP_004596598.1| - 1.3 8.7 8.4 22 4.8 0.9 2.1 1 1 1 2 2 2 0 Nudix N-terminal zf-ISL3 PF14690.1 gi|336253491|ref|YP_004596598.1| - 1.4 8.9 4.5 5.6 7.0 3.1 1.9 1 1 0 1 1 1 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF2082 PF09855.4 gi|336253491|ref|YP_004596598.1| - 2.4 8.0 5.8 6.3 6.7 0.5 2.6 1 1 2 3 3 3 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zf-ribbon_3 PF13248.1 gi|336253491|ref|YP_004596598.1| - 4.2 6.7 6.0 26 4.1 4.1 2.0 1 1 0 1 1 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|336253491|ref|YP_004596598.1| - 6.3 6.8 6.3 1.9 8.4 0.6 2.0 1 1 1 2 2 2 0 Zinc ribbon domain Peptidase_M22 PF00814.20 gi|336253492|ref|YP_004596599.1| - 1.3e-75 254.3 0.0 1.8e-75 253.9 0.0 1.1 1 0 0 1 1 1 1 Glycoprotease family Kdo PF06293.9 gi|336253492|ref|YP_004596599.1| - 0.0034 16.4 0.0 0.0066 15.5 0.0 1.4 1 0 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase PF00069.20 gi|336253492|ref|YP_004596599.1| - 0.081 12.0 0.0 0.13 11.4 0.0 1.2 1 0 0 1 1 1 0 Protein kinase domain DUF2071 PF09844.4 gi|336253493|ref|YP_004596600.1| - 3.8e-61 206.2 0.0 4.3e-61 206.0 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (COG2071) ADC PF06314.6 gi|336253493|ref|YP_004596600.1| - 0.0041 16.4 0.1 0.0055 16.0 0.0 1.3 1 0 0 1 1 1 1 Acetoacetate decarboxylase (ADC) GFO_IDH_MocA PF01408.17 gi|336253495|ref|YP_004596602.1| - 2.9e-26 92.3 0.2 7.1e-26 91.0 0.1 1.7 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|336253495|ref|YP_004596602.1| - 1.1e-07 31.6 0.0 2.3e-07 30.6 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain NAD_binding_2 PF03446.10 gi|336253495|ref|YP_004596602.1| - 3.4e-05 23.7 1.6 4.8e-05 23.2 0.1 2.0 3 1 0 3 3 3 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|336253495|ref|YP_004596602.1| - 9.8e-05 22.7 0.1 0.00029 21.2 0.1 1.8 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.7 gi|336253495|ref|YP_004596602.1| - 0.0014 17.9 0.3 0.0031 16.9 0.0 1.7 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain 2-Hacid_dh_C PF02826.14 gi|336253495|ref|YP_004596602.1| - 0.0034 16.5 0.0 0.0062 15.6 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|336253495|ref|YP_004596602.1| - 0.035 13.4 0.3 0.13 11.6 0.1 1.9 1 1 1 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.13 gi|336253495|ref|YP_004596602.1| - 0.06 12.9 0.5 0.11 12.0 0.2 1.5 1 1 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Ham1p_like PF01725.11 gi|336253496|ref|YP_004596603.1| - 6.1e-52 175.7 0.0 6.9e-52 175.5 0.0 1.0 1 0 0 1 1 1 1 Ham1 family PIN_3 PF13470.1 gi|336253497|ref|YP_004596604.1| - 0.081 13.6 2.8 0.22 12.2 1.9 1.7 1 1 0 1 1 1 0 PIN domain SBP_bac_8 PF13416.1 gi|336253498|ref|YP_004596605.1| - 7.8e-22 78.3 0.8 1.1e-21 77.7 0.6 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|336253498|ref|YP_004596605.1| - 2e-13 50.7 6.0 2.7e-13 50.3 4.2 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SnoaL_2 PF12680.2 gi|336253498|ref|YP_004596605.1| - 0.0014 19.0 2.7 0.15 12.5 0.1 3.3 2 1 0 3 3 3 1 SnoaL-like domain TAT_signal PF10518.4 gi|336253498|ref|YP_004596605.1| - 0.012 15.5 5.1 0.028 14.3 3.5 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence MutS_V PF00488.16 gi|336253499|ref|YP_004596606.1| - 5e-101 337.0 0.0 1.2e-100 335.7 0.0 1.7 1 0 0 1 1 1 1 MutS domain V MutS_III PF05192.13 gi|336253499|ref|YP_004596606.1| - 2.5e-41 141.7 6.7 4.5e-41 140.8 4.3 1.7 2 0 0 2 2 2 1 MutS domain III MutS_I PF01624.15 gi|336253499|ref|YP_004596606.1| - 2.4e-28 98.4 0.0 7.3e-28 96.8 0.0 1.8 2 0 0 2 2 2 1 MutS domain I MutS_IV PF05190.13 gi|336253499|ref|YP_004596606.1| - 4.6e-25 87.6 1.9 1.1e-24 86.4 1.3 1.7 1 0 0 1 1 1 1 MutS family domain IV MutS_II PF05188.12 gi|336253499|ref|YP_004596606.1| - 2.4e-20 73.0 0.0 1.4e-19 70.5 0.0 2.4 3 0 0 3 3 3 1 MutS domain II AAA_23 PF13476.1 gi|336253499|ref|YP_004596606.1| - 0.01 16.1 0.7 1.2 9.4 0.0 2.5 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.1 gi|336253499|ref|YP_004596606.1| - 0.035 13.6 0.0 0.079 12.5 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_14 PF13173.1 gi|336253499|ref|YP_004596606.1| - 0.093 12.6 0.0 0.39 10.6 0.0 2.0 1 1 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|336253499|ref|YP_004596606.1| - 2.9 8.7 6.3 8.6 7.2 0.0 3.9 3 2 0 3 3 3 0 AAA domain MCPsignal PF00015.16 gi|336253500|ref|YP_004596607.1| - 4.2e-52 176.7 50.7 2.8e-49 167.5 23.0 2.5 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain Protoglobin PF11563.3 gi|336253500|ref|YP_004596607.1| - 9.5e-10 38.3 0.1 3.6e-09 36.4 0.0 2.1 2 0 0 2 2 1 1 Protoglobin Laminin_II PF06009.7 gi|336253500|ref|YP_004596607.1| - 0.00014 21.6 32.9 0.25 11.1 2.6 4.9 2 2 3 5 5 5 4 Laminin Domain II Spc7 PF08317.6 gi|336253500|ref|YP_004596607.1| - 0.00035 19.3 18.3 0.014 14.0 3.7 2.6 1 1 0 2 2 2 2 Spc7 kinetochore protein Sec5 PF15469.1 gi|336253500|ref|YP_004596607.1| - 0.0016 18.1 6.8 0.0057 16.4 2.2 3.1 1 1 1 2 2 2 1 Exocyst complex component Sec5 DUF948 PF06103.6 gi|336253500|ref|YP_004596607.1| - 0.002 17.9 30.6 1.1 9.2 2.6 5.2 2 2 2 4 4 4 2 Bacterial protein of unknown function (DUF948) IncA PF04156.9 gi|336253500|ref|YP_004596607.1| - 0.0037 16.8 18.5 0.28 10.7 4.8 3.2 1 1 0 2 2 2 2 IncA protein APG17 PF04108.7 gi|336253500|ref|YP_004596607.1| - 0.0076 15.0 1.6 0.0076 15.0 1.1 2.9 1 1 0 2 2 2 1 Autophagy protein Apg17 DASH_Dad2 PF08654.5 gi|336253500|ref|YP_004596607.1| - 0.0094 15.9 20.9 3.6 7.6 0.4 5.3 2 2 2 5 5 5 2 DASH complex subunit Dad2 CorA PF01544.13 gi|336253500|ref|YP_004596607.1| - 0.032 13.2 13.6 0.3 10.0 1.3 3.2 3 1 1 4 4 4 0 CorA-like Mg2+ transporter protein DUF1664 PF07889.7 gi|336253500|ref|YP_004596607.1| - 0.033 13.9 27.8 0.21 11.3 1.4 4.6 2 2 3 5 5 5 0 Protein of unknown function (DUF1664) COG2 PF06148.6 gi|336253500|ref|YP_004596607.1| - 0.051 13.4 24.3 7.1 6.5 0.7 5.5 2 2 2 4 4 4 0 COG (conserved oligomeric Golgi) complex component, COG2 TPR_MLP1_2 PF07926.7 gi|336253500|ref|YP_004596607.1| - 0.086 12.5 24.8 0.13 12.0 7.1 3.4 2 2 0 2 2 2 0 TPR/MLP1/MLP2-like protein Atg14 PF10186.4 gi|336253500|ref|YP_004596607.1| - 0.094 11.6 6.0 0.96 8.3 0.7 2.3 2 0 0 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 DUF4200 PF13863.1 gi|336253500|ref|YP_004596607.1| - 0.1 12.5 20.1 0.066 13.1 0.7 4.2 2 2 2 4 4 4 0 Domain of unknown function (DUF4200) BLOC1_2 PF10046.4 gi|336253500|ref|YP_004596607.1| - 0.11 12.6 27.2 2.1 8.5 0.1 5.6 2 2 3 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 STAT_alpha PF01017.15 gi|336253500|ref|YP_004596607.1| - 0.12 12.1 5.7 1 9.0 0.6 3.5 1 1 0 2 2 2 0 STAT protein, all-alpha domain Reo_sigmaC PF04582.7 gi|336253500|ref|YP_004596607.1| - 0.25 10.4 24.4 0.59 9.2 4.0 3.1 1 1 0 2 2 2 0 Reovirus sigma C capsid protein IFT57 PF10498.4 gi|336253500|ref|YP_004596607.1| - 0.28 9.8 18.1 0.029 13.1 2.1 2.9 1 1 0 2 2 2 0 Intra-flagellar transport protein 57 MutS_III PF05192.13 gi|336253500|ref|YP_004596607.1| - 0.41 10.3 9.1 0.43 10.3 4.3 2.6 1 1 1 2 2 2 0 MutS domain III Syntaxin PF00804.20 gi|336253500|ref|YP_004596607.1| - 0.54 10.4 25.2 28 4.9 5.9 5.0 1 1 2 3 3 3 0 Syntaxin Allexi_40kDa PF05549.6 gi|336253500|ref|YP_004596607.1| - 0.8 8.9 11.6 0.45 9.7 0.8 3.3 1 1 1 3 3 3 0 Allexivirus 40kDa protein ISG65-75 PF11727.3 gi|336253500|ref|YP_004596607.1| - 1.1 8.3 30.0 0.59 9.1 5.8 3.1 1 1 2 3 3 3 0 Invariant surface glycoprotein DUF3322 PF11795.3 gi|336253500|ref|YP_004596607.1| - 1.4 8.5 6.2 1.5 8.4 0.9 3.1 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria N-term (DUF3322) NOC3p PF07540.6 gi|336253500|ref|YP_004596607.1| - 1.4 9.2 6.6 6 7.2 0.1 3.3 3 1 1 4 4 2 0 Nucleolar complex-associated protein Lipoprotein_20 PF13942.1 gi|336253500|ref|YP_004596607.1| - 1.4 8.4 7.0 0.51 9.8 0.2 2.9 3 0 0 3 3 3 0 YfhG lipoprotein DUF489 PF04356.7 gi|336253500|ref|YP_004596607.1| - 2.7 7.5 6.1 3.4 7.2 1.7 2.8 2 2 0 2 2 2 0 Protein of unknown function (DUF489) Cytochrom_C_2 PF01322.15 gi|336253500|ref|YP_004596607.1| - 2.9 8.4 23.8 0.44 11.0 2.1 4.5 2 1 3 5 5 4 0 Cytochrome C' Med28 PF11594.3 gi|336253500|ref|YP_004596607.1| - 4.1 7.6 12.9 4.2 7.6 0.3 4.0 2 1 0 2 2 2 0 Mediator complex subunit 28 Ufd2P_core PF10408.4 gi|336253500|ref|YP_004596607.1| - 5 5.2 4.5 1.3 7.1 0.7 1.7 1 1 1 2 2 2 0 Ubiquitin elongating factor core DUF4559 PF15112.1 gi|336253500|ref|YP_004596607.1| - 5.1 6.1 21.7 1.8 7.6 4.9 2.8 1 1 2 3 3 3 0 Domain of unknown function (DUF4559) Herpes_U30 PF04523.8 gi|336253500|ref|YP_004596607.1| - 7.5 3.8 6.5 6.6 4.0 0.3 2.2 1 1 0 2 2 2 0 Herpes virus tegument protein U30 P4Ha_N PF08336.6 gi|336253500|ref|YP_004596607.1| - 8.6 6.1 7.9 14 5.4 0.9 3.5 2 2 0 2 2 2 0 Prolyl 4-Hydroxylase alpha-subunit, N-terminal region Seryl_tRNA_N PF02403.17 gi|336253500|ref|YP_004596607.1| - 8.9 6.3 25.2 18 5.4 2.4 4.7 2 2 3 5 5 5 0 Seryl-tRNA synthetase N-terminal domain HAUS6_N PF14661.1 gi|336253500|ref|YP_004596607.1| - 9.1 5.5 13.7 3.7 6.8 1.2 2.8 2 1 0 2 2 2 0 HAUS augmin-like complex subunit 6 N-terminus tRNA_bind PF01588.15 gi|336253501|ref|YP_004596608.1| - 6.5e-14 51.5 0.0 8e-14 51.2 0.0 1.0 1 0 0 1 1 1 1 Putative tRNA binding domain Bac_luciferase PF00296.15 gi|336253502|ref|YP_004596609.1| - 6e-71 239.0 5.7 7.5e-71 238.7 3.9 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase PEP_mutase PF13714.1 gi|336253502|ref|YP_004596609.1| - 0.077 12.2 0.1 0.16 11.1 0.0 1.6 2 0 0 2 2 2 0 Phosphoenolpyruvate phosphomutase Phos_pyr_kin PF08543.7 gi|336253503|ref|YP_004596610.1| - 2.4e-88 295.4 2.4 2.4e-88 295.4 1.6 1.7 2 0 0 2 2 2 1 Phosphomethylpyrimidine kinase Aldolase_2 PF10120.4 gi|336253503|ref|YP_004596610.1| - 8.1e-50 168.5 0.2 1.3e-49 167.8 0.1 1.3 1 0 0 1 1 1 1 Putative aldolase PfkB PF00294.19 gi|336253503|ref|YP_004596610.1| - 5.6e-13 48.6 2.0 9.5e-13 47.9 1.4 1.3 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Carb_kinase PF01256.12 gi|336253503|ref|YP_004596610.1| - 0.00063 19.0 3.0 0.0011 18.3 2.1 1.3 1 0 0 1 1 1 1 Carbohydrate kinase AIRS_C PF02769.17 gi|336253504|ref|YP_004596611.1| - 9.4e-24 84.1 1.0 1.4e-23 83.6 0.7 1.2 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|336253504|ref|YP_004596611.1| - 7.8e-06 26.0 1.8 4.8e-05 23.5 0.0 2.5 2 1 0 2 2 2 1 AIR synthase related protein, N-terminal domain YL1_C PF08265.6 gi|336253504|ref|YP_004596611.1| - 0.099 12.2 0.0 0.18 11.4 0.0 1.4 1 0 0 1 1 1 0 YL1 nuclear protein C-terminal domain Sulfate_transp PF00916.15 gi|336253505|ref|YP_004596612.1| - 0.0019 17.2 8.6 0.0019 17.2 5.9 2.3 2 1 1 3 3 3 1 Sulfate transporter family DHDPS PF00701.17 gi|336253506|ref|YP_004596613.1| - 2e-68 230.1 0.0 2.3e-68 229.9 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family PRA-PH PF01503.12 gi|336253506|ref|YP_004596613.1| - 0.73 10.1 4.1 2.9 8.2 0.0 2.6 3 0 0 3 3 3 0 Phosphoribosyl-ATP pyrophosphohydrolase MutL_C PF08676.6 gi|336253507|ref|YP_004596614.1| - 1.7e-35 121.7 0.0 2.5e-35 121.1 0.0 1.3 1 0 0 1 1 1 1 MutL C terminal dimerisation domain DNA_mis_repair PF01119.14 gi|336253507|ref|YP_004596614.1| - 2.9e-33 113.8 0.0 5.2e-33 113.0 0.0 1.4 1 0 0 1 1 1 1 DNA mismatch repair protein, C-terminal domain HATPase_c_3 PF13589.1 gi|336253507|ref|YP_004596614.1| - 8.3e-12 44.9 0.0 1.8e-11 43.8 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.21 gi|336253507|ref|YP_004596614.1| - 7.8e-10 38.4 0.1 1.9e-09 37.2 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SSF PF00474.12 gi|336253509|ref|YP_004596616.1| - 1.1e-42 146.1 24.2 1.6e-42 145.5 16.7 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family DUF3311 PF11755.3 gi|336253510|ref|YP_004596617.1| - 7.5e-14 51.0 3.3 8e-14 50.9 2.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3311) TRAP-gamma PF07074.7 gi|336253510|ref|YP_004596617.1| - 0.064 12.7 0.6 0.079 12.4 0.4 1.1 1 0 0 1 1 1 0 Translocon-associated protein, gamma subunit (TRAP-gamma) DUF3154 PF11351.3 gi|336253510|ref|YP_004596617.1| - 3.9 7.2 4.9 5.2 6.8 3.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3154) HTH_20 PF12840.2 gi|336253511|ref|YP_004596618.1| - 2.9e-15 55.8 0.0 6e-15 54.7 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|336253511|ref|YP_004596618.1| - 9.9e-05 21.6 0.0 0.00015 21.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|336253511|ref|YP_004596618.1| - 0.00022 20.8 0.0 0.00044 19.8 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|336253511|ref|YP_004596618.1| - 0.00024 20.6 0.0 0.0004 19.9 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family FaeA PF04703.7 gi|336253511|ref|YP_004596618.1| - 0.0011 19.0 0.0 0.0021 18.1 0.0 1.3 1 0 0 1 1 1 1 FaeA-like protein TrmB PF01978.14 gi|336253511|ref|YP_004596618.1| - 0.0012 18.5 0.0 0.0037 16.9 0.0 1.8 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB DUF2513 PF10711.4 gi|336253511|ref|YP_004596618.1| - 0.073 13.1 0.0 0.12 12.5 0.0 1.3 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) HTH_12 PF08461.5 gi|336253511|ref|YP_004596618.1| - 0.12 12.1 0.0 0.22 11.3 0.0 1.4 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain Toprim_4 PF13662.1 gi|336253512|ref|YP_004596619.1| - 4.4e-10 39.4 1.3 1.3e-09 37.9 0.2 2.4 2 1 0 2 2 2 1 Toprim domain Toprim_2 PF13155.1 gi|336253512|ref|YP_004596619.1| - 0.012 15.8 0.0 0.027 14.7 0.0 1.6 1 0 0 1 1 1 0 Toprim-like Toprim PF01751.17 gi|336253512|ref|YP_004596619.1| - 0.04 13.8 0.1 0.18 11.8 0.1 2.1 1 1 0 1 1 1 0 Toprim domain DUF92 PF01940.11 gi|336253515|ref|YP_004596622.1| - 2.1e-64 216.7 18.8 2.1e-64 216.7 13.0 3.0 3 1 0 3 3 3 1 Integral membrane protein DUF92 Prenyltransf PF01255.14 gi|336253516|ref|YP_004596623.1| - 7.8e-27 93.8 0.0 2e-26 92.4 0.0 1.6 2 0 0 2 2 2 1 Putative undecaprenyl diphosphate synthase MBT PF02820.13 gi|336253517|ref|YP_004596624.1| - 0.087 12.7 0.0 0.18 11.7 0.0 1.6 1 0 0 1 1 1 0 mbt repeat Prenyltransf PF01255.14 gi|336253518|ref|YP_004596625.1| - 1.2e-69 233.8 0.0 1.6e-69 233.4 0.0 1.1 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase TFIIB PF00382.14 gi|336253520|ref|YP_004596627.1| - 7.3e-34 115.4 0.7 8.5e-17 60.7 0.0 2.5 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|336253520|ref|YP_004596627.1| - 4.4e-13 48.3 0.3 7.4e-13 47.5 0.2 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding Cyclin_C PF02984.14 gi|336253520|ref|YP_004596627.1| - 1.5e-05 24.8 0.1 0.00038 20.3 0.0 2.4 3 0 0 3 3 3 1 Cyclin, C-terminal domain OrfB_Zn_ribbon PF07282.6 gi|336253520|ref|YP_004596627.1| - 0.0042 16.7 2.2 0.0072 15.9 0.5 2.1 2 0 0 2 2 2 1 Putative transposase DNA-binding domain HTH_11 PF08279.7 gi|336253520|ref|YP_004596627.1| - 0.065 12.8 0.0 0.16 11.6 0.0 1.6 1 0 0 1 1 1 0 HTH domain Cyclin_N PF00134.18 gi|336253520|ref|YP_004596627.1| - 0.065 12.7 0.0 0.25 10.8 0.0 1.8 1 1 1 2 2 2 0 Cyclin, N-terminal domain zf-RING_3 PF14369.1 gi|336253520|ref|YP_004596627.1| - 0.84 9.6 3.1 0.46 10.5 0.2 2.0 1 1 1 2 2 2 0 zinc-finger NAD_binding_7 PF13241.1 gi|336253521|ref|YP_004596628.1| - 1.3e-23 83.2 0.0 2.3e-23 82.4 0.0 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding PALP PF00291.20 gi|336253521|ref|YP_004596628.1| - 0.00014 21.2 0.3 0.14 11.3 0.0 2.1 1 1 0 2 2 2 2 Pyridoxal-phosphate dependent enzyme Sirohm_synth_M PF14824.1 gi|336253521|ref|YP_004596628.1| - 0.0024 16.7 0.0 0.0045 15.9 0.0 1.5 1 0 0 1 1 1 1 Sirohaem biosynthesis protein central Peripla_BP_4 PF13407.1 gi|336253521|ref|YP_004596628.1| - 0.12 11.7 0.1 0.17 11.2 0.1 1.3 1 0 0 1 1 1 0 Periplasmic binding protein domain adh_short PF00106.20 gi|336253521|ref|YP_004596628.1| - 0.29 11.0 2.2 0.44 10.4 1.1 1.6 1 1 0 1 1 1 0 short chain dehydrogenase GlutR_N PF05201.10 gi|336253522|ref|YP_004596629.1| - 1.5e-36 125.2 0.0 3.5e-36 124.0 0.0 1.6 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, N-terminal domain Shikimate_DH PF01488.15 gi|336253522|ref|YP_004596629.1| - 1.3e-32 112.7 0.1 2.6e-32 111.7 0.1 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase GlutR_dimer PF00745.15 gi|336253522|ref|YP_004596629.1| - 5.5e-22 77.6 2.0 1.2e-21 76.5 1.4 1.6 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain F420_oxidored PF03807.12 gi|336253522|ref|YP_004596629.1| - 1.2e-06 28.8 0.1 5.5e-06 26.7 0.1 2.2 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|336253522|ref|YP_004596629.1| - 1.9e-05 24.5 0.4 6.7e-05 22.7 0.1 2.0 1 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase AdoHcyase_NAD PF00670.16 gi|336253522|ref|YP_004596629.1| - 0.00013 21.8 0.2 0.00029 20.7 0.2 1.5 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NAD_binding_7 PF13241.1 gi|336253522|ref|YP_004596629.1| - 0.00031 20.9 0.2 0.00031 20.9 0.2 2.3 3 0 0 3 3 3 1 Putative NAD(P)-binding 2-Hacid_dh_C PF02826.14 gi|336253522|ref|YP_004596629.1| - 0.00039 19.6 0.1 0.00077 18.6 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Saccharop_dh PF03435.13 gi|336253522|ref|YP_004596629.1| - 0.001 18.1 0.5 0.0019 17.2 0.3 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase adh_short PF00106.20 gi|336253522|ref|YP_004596629.1| - 0.0079 16.1 2.0 0.0079 16.1 1.4 2.5 1 1 0 2 2 2 1 short chain dehydrogenase ThiF PF00899.16 gi|336253522|ref|YP_004596629.1| - 0.008 15.9 2.9 0.01 15.6 0.3 2.4 2 1 1 3 3 3 1 ThiF family TrkA_N PF02254.13 gi|336253522|ref|YP_004596629.1| - 0.025 14.5 2.7 0.029 14.3 0.5 2.2 2 0 0 2 2 2 0 TrkA-N domain HHH_5 PF14520.1 gi|336253522|ref|YP_004596629.1| - 0.033 14.3 0.6 4.5 7.5 0.1 3.5 2 2 0 2 2 2 0 Helix-hairpin-helix domain ApbA PF02558.11 gi|336253522|ref|YP_004596629.1| - 0.063 12.7 0.1 0.12 11.8 0.0 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA GFO_IDH_MocA PF01408.17 gi|336253522|ref|YP_004596629.1| - 1.7 9.1 5.6 0.79 10.2 0.1 2.8 3 1 1 4 4 3 0 Oxidoreductase family, NAD-binding Rossmann fold Glyco_hydro_3_C PF01915.17 gi|336253522|ref|YP_004596629.1| - 6 6.3 9.1 5.6 6.4 0.5 2.6 1 1 1 2 2 2 0 Glycosyl hydrolase family 3 C-terminal domain Pterin_4a PF01329.14 gi|336253523|ref|YP_004596630.1| - 6.9e-22 77.0 0.0 8e-22 76.8 0.0 1.0 1 0 0 1 1 1 1 Pterin 4 alpha carbinolamine dehydratase IF-2 PF11987.3 gi|336253523|ref|YP_004596630.1| - 0.099 12.5 0.0 0.21 11.4 0.0 1.5 1 1 0 1 1 1 0 Translation-initiation factor 2 AAA_8 PF12780.2 gi|336253524|ref|YP_004596631.1| - 0.073 12.0 0.0 0.095 11.6 0.0 1.1 1 0 0 1 1 1 0 P-loop containing dynein motor region D4 HAD_2 PF13419.1 gi|336253525|ref|YP_004596632.1| - 8.4e-19 68.4 0.1 1e-18 68.1 0.1 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|336253525|ref|YP_004596632.1| - 3.5e-05 24.3 0.0 0.0015 18.9 0.0 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|336253525|ref|YP_004596632.1| - 0.0042 17.2 0.2 0.0084 16.2 0.2 1.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase DUF86 PF01934.12 gi|336253525|ref|YP_004596632.1| - 0.011 15.3 0.0 0.018 14.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function DUF86 Hydrolase_like PF13242.1 gi|336253525|ref|YP_004596632.1| - 0.027 14.1 0.0 0.045 13.4 0.0 1.4 1 0 0 1 1 1 0 HAD-hyrolase-like HTH_10 PF04967.7 gi|336253526|ref|YP_004596633.1| - 1.9e-18 65.7 0.1 3.2e-18 65.0 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_24 PF13412.1 gi|336253526|ref|YP_004596633.1| - 0.00026 20.2 0.0 0.00083 18.7 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|336253526|ref|YP_004596633.1| - 0.00052 19.5 0.3 0.0036 16.8 0.1 2.3 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.2 gi|336253526|ref|YP_004596633.1| - 0.0029 17.2 0.0 0.0084 15.7 0.0 1.8 1 0 0 1 1 1 1 MarR family HTH_38 PF13936.1 gi|336253526|ref|YP_004596633.1| - 0.0051 16.3 0.2 0.0094 15.4 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|336253526|ref|YP_004596633.1| - 0.0051 16.0 0.2 0.011 15.0 0.2 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_AraC PF00165.18 gi|336253526|ref|YP_004596633.1| - 0.014 15.2 0.0 0.071 12.9 0.0 2.2 3 0 0 3 3 3 0 Bacterial regulatory helix-turn-helix proteins, AraC family TetR_N PF00440.18 gi|336253526|ref|YP_004596633.1| - 0.015 14.9 0.0 0.05 13.2 0.0 2.1 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_3 PF01381.17 gi|336253526|ref|YP_004596633.1| - 0.017 14.9 0.0 0.038 13.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix UPF0122 PF04297.9 gi|336253526|ref|YP_004596633.1| - 0.032 14.2 0.0 0.051 13.5 0.0 1.3 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like Sigma70_r4_2 PF08281.7 gi|336253526|ref|YP_004596633.1| - 0.046 13.1 0.4 0.53 9.7 0.3 2.2 1 1 0 1 1 1 0 Sigma-70, region 4 TMV_coat PF00721.16 gi|336253526|ref|YP_004596633.1| - 0.054 13.4 0.0 0.086 12.7 0.0 1.2 1 0 0 1 1 1 0 Virus coat protein (TMV like) Phage_CI_repr PF07022.8 gi|336253526|ref|YP_004596633.1| - 0.068 13.2 0.0 0.32 11.0 0.0 2.0 2 0 0 2 2 2 0 Bacteriophage CI repressor helix-turn-helix domain GntR PF00392.16 gi|336253526|ref|YP_004596633.1| - 0.1 12.0 0.0 1 8.8 0.1 2.2 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family MoeA_N PF03453.12 gi|336253527|ref|YP_004596634.1| - 1.9e-46 157.3 2.1 3.3e-46 156.6 1.5 1.4 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|336253527|ref|YP_004596634.1| - 7.4e-27 93.5 0.1 1.3e-26 92.7 0.0 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain PBP_like PF12727.2 gi|336253527|ref|YP_004596634.1| - 9.8e-27 93.1 0.8 4.7e-26 90.9 0.1 2.4 2 1 0 2 2 2 1 PBP superfamily domain MoeA_C PF03454.10 gi|336253527|ref|YP_004596634.1| - 2.4e-16 59.4 0.6 6.9e-16 57.9 0.0 2.2 2 0 0 2 2 2 1 MoeA C-terminal region (domain IV) PBP_like_2 PF12849.2 gi|336253527|ref|YP_004596634.1| - 0.032 13.7 0.0 0.56 9.6 0.0 2.4 1 1 0 1 1 1 0 PBP superfamily domain SBP_bac_11 PF13531.1 gi|336253527|ref|YP_004596634.1| - 0.076 12.6 0.0 0.16 11.5 0.0 1.5 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein MatE PF01554.13 gi|336253528|ref|YP_004596635.1| - 2e-48 164.0 19.8 1e-25 90.2 2.1 2.6 2 1 0 2 2 2 2 MatE MVIN PF03023.9 gi|336253528|ref|YP_004596635.1| - 7.2e-09 34.5 3.2 7.2e-09 34.5 2.2 2.1 2 0 0 2 2 2 1 MviN-like protein Polysacc_synt_C PF14667.1 gi|336253528|ref|YP_004596635.1| - 1.6e-08 34.4 9.2 1.6e-08 34.4 6.4 4.1 4 2 2 6 6 6 1 Polysaccharide biosynthesis C-terminal domain DUF3341 PF11821.3 gi|336253528|ref|YP_004596635.1| - 0.025 14.0 0.2 0.025 14.0 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3341) Lumazine_bd_2 PF12893.2 gi|336253529|ref|YP_004596636.1| - 0.14 12.7 0.0 0.17 12.4 0.0 1.2 1 0 0 1 1 1 0 Putative lumazine-binding TrkA_N PF02254.13 gi|336253530|ref|YP_004596637.1| - 2.9e-34 117.5 8.8 1.1e-16 60.8 1.3 2.5 2 0 0 2 2 2 2 TrkA-N domain TrkA_C PF02080.16 gi|336253530|ref|YP_004596637.1| - 8.4e-16 57.3 7.3 1.1e-07 31.3 0.5 3.6 4 1 0 4 4 4 2 TrkA-C domain Ion_trans_2 PF07885.11 gi|336253530|ref|YP_004596637.1| - 0.0022 17.6 3.3 0.0037 16.9 2.3 1.3 1 0 0 1 1 1 1 Ion channel MoeA_N PF03453.12 gi|336253531|ref|YP_004596638.1| - 6e-42 142.7 2.9 9.8e-42 142.0 2.0 1.4 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|336253531|ref|YP_004596638.1| - 3.9e-28 97.6 0.1 6.5e-28 96.9 0.1 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|336253531|ref|YP_004596638.1| - 1.7e-17 63.1 2.5 1.3e-16 60.2 0.0 3.4 3 1 0 3 3 3 1 MoeA C-terminal region (domain IV) GIDE PF12483.3 gi|336253532|ref|YP_004596639.1| - 1.4e-09 37.4 0.0 1.5e-07 30.9 0.0 2.9 2 1 0 2 2 2 1 E3 Ubiquitin ligase HSP20 PF00011.16 gi|336253533|ref|YP_004596640.1| - 1.3e-12 47.4 0.0 1.7e-12 47.0 0.0 1.2 1 0 0 1 1 1 1 Hsp20/alpha crystallin family Trypan_PARP PF05887.6 gi|336253533|ref|YP_004596640.1| - 0.082 12.7 7.3 0.11 12.2 5.0 1.2 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) ABC1 PF03109.11 gi|336253534|ref|YP_004596641.1| - 3.6e-27 94.6 0.0 1.8e-25 89.1 0.0 2.9 2 1 0 2 2 2 1 ABC1 family APH PF01636.18 gi|336253534|ref|YP_004596641.1| - 0.00011 22.0 0.0 0.00068 19.4 0.0 2.3 2 0 0 2 2 2 1 Phosphotransferase enzyme family MR_MLE_C PF13378.1 gi|336253536|ref|YP_004596643.1| - 0.0022 17.9 0.0 0.0045 16.9 0.0 1.5 1 0 0 1 1 1 1 Enolase C-terminal domain-like eIF-5a PF01287.15 gi|336253537|ref|YP_004596644.1| - 6.4e-05 22.8 1.8 0.00014 21.7 1.3 1.6 1 1 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.7 gi|336253537|ref|YP_004596644.1| - 0.0016 18.3 0.0 0.031 14.1 0.0 2.1 2 0 0 2 2 2 1 Elongation factor P (EF-P) KOW-like domain KOW PF00467.24 gi|336253537|ref|YP_004596644.1| - 0.02 14.6 0.0 1 9.1 0.0 2.3 2 0 0 2 2 2 0 KOW motif EFP PF01132.15 gi|336253537|ref|YP_004596644.1| - 0.024 14.2 0.1 0.04 13.5 0.1 1.5 1 0 0 1 1 1 0 Elongation factor P (EF-P) OB domain Arginase PF00491.16 gi|336253538|ref|YP_004596645.1| - 6.7e-56 189.6 0.4 7.6e-56 189.4 0.3 1.0 1 0 0 1 1 1 1 Arginase family PAP1 PF08601.5 gi|336253538|ref|YP_004596645.1| - 0.045 13.4 0.3 0.054 13.1 0.2 1.3 1 1 0 1 1 1 0 Transcription factor PAP1 FmdA_AmdA PF03069.10 gi|336253540|ref|YP_004596647.1| - 7.3e-45 153.2 2.3 7.9e-23 80.7 0.1 2.2 1 1 1 2 2 2 2 Acetamidase/Formamidase family NIF3 PF01784.13 gi|336253541|ref|YP_004596648.1| - 5.9e-50 170.0 0.0 6.9e-50 169.8 0.0 1.0 1 0 0 1 1 1 1 NIF3 (NGG1p interacting factor 3) Glyoxalase_2 PF12681.2 gi|336253541|ref|YP_004596648.1| - 0.057 14.0 0.2 0.21 12.2 0.0 2.0 2 0 0 2 2 2 0 Glyoxalase-like domain Glyoxalase_4 PF13669.1 gi|336253541|ref|YP_004596648.1| - 0.14 12.1 1.2 0.37 10.8 0.1 2.1 2 1 0 2 2 2 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily PGA_cap PF09587.5 gi|336253541|ref|YP_004596648.1| - 0.4 9.9 2.6 1.3 8.3 0.1 2.4 2 1 0 2 2 2 0 Bacterial capsule synthesis protein PGA_cap DUF2201_N PF13203.1 gi|336253542|ref|YP_004596649.1| - 0.45 9.6 3.4 0.66 9.0 2.4 1.2 1 0 0 1 1 1 0 Putative metallopeptidase domain NARP1 PF12569.3 gi|336253542|ref|YP_004596649.1| - 0.52 9.0 6.9 0.7 8.5 4.8 1.1 1 0 0 1 1 1 0 NMDA receptor-regulated protein 1 CDC45 PF02724.9 gi|336253542|ref|YP_004596649.1| - 4 5.3 6.9 5 5.0 4.8 1.1 1 0 0 1 1 1 0 CDC45-like protein DS PF01916.12 gi|336253543|ref|YP_004596650.1| - 3.5e-79 266.0 0.0 4.6e-79 265.6 0.0 1.1 1 0 0 1 1 1 1 Deoxyhypusine synthase AA_kinase PF00696.23 gi|336253543|ref|YP_004596650.1| - 0.00098 18.7 0.0 0.0018 17.8 0.0 1.5 1 0 0 1 1 1 1 Amino acid kinase family DUF4049 PF13258.1 gi|336253544|ref|YP_004596651.1| - 0.032 13.2 0.0 0.036 13.0 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4049) Histone_HNS PF00816.16 gi|336253544|ref|YP_004596651.1| - 0.044 14.2 0.4 0.07 13.6 0.3 1.2 1 0 0 1 1 1 0 H-NS histone family PRA-PH PF01503.12 gi|336253544|ref|YP_004596651.1| - 0.15 12.3 3.2 0.27 11.5 2.2 1.7 1 1 0 1 1 1 0 Phosphoribosyl-ATP pyrophosphohydrolase Lactamase_B_2 PF12706.2 gi|336253546|ref|YP_004596653.1| - 2.7e-20 72.7 0.1 3.7e-20 72.3 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|336253546|ref|YP_004596653.1| - 4.9e-11 42.5 0.0 2.8e-10 40.1 0.0 2.1 2 1 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|336253546|ref|YP_004596653.1| - 0.00038 20.1 6.4 0.0058 16.2 4.4 2.7 1 1 1 2 2 2 1 Metallo-beta-lactamase superfamily Pyr_redox_2 PF07992.9 gi|336253547|ref|YP_004596654.1| - 2.3e-25 89.6 0.0 3.1e-25 89.2 0.0 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|336253547|ref|YP_004596654.1| - 3.4e-08 33.7 0.1 6.9e-07 29.5 0.1 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|336253547|ref|YP_004596654.1| - 6.5e-07 28.5 6.6 3.7e-05 22.8 0.3 2.4 1 1 1 2 2 2 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|336253547|ref|YP_004596654.1| - 1.7e-05 24.7 1.4 3.7e-05 23.6 0.4 2.2 2 1 0 2 2 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|336253547|ref|YP_004596654.1| - 1.8e-05 23.7 0.6 1.8e-05 23.7 0.4 2.4 2 1 0 2 2 2 1 FAD binding domain GIDA PF01134.17 gi|336253547|ref|YP_004596654.1| - 8.8e-05 21.5 0.2 0.00015 20.7 0.1 1.4 1 0 0 1 1 1 1 Glucose inhibited division protein A HI0933_like PF03486.9 gi|336253547|ref|YP_004596654.1| - 0.00011 20.8 0.0 0.00034 19.2 0.0 1.7 2 0 0 2 2 2 1 HI0933-like protein FAD_oxidored PF12831.2 gi|336253547|ref|YP_004596654.1| - 0.00012 21.3 0.1 0.00018 20.7 0.1 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|336253547|ref|YP_004596654.1| - 0.0005 19.2 0.3 0.001 18.2 0.1 1.5 2 0 0 2 2 2 1 FAD binding domain Thi4 PF01946.12 gi|336253547|ref|YP_004596654.1| - 0.00055 19.1 0.0 0.0011 18.1 0.0 1.4 1 0 0 1 1 1 1 Thi4 family Pyr_redox PF00070.22 gi|336253547|ref|YP_004596654.1| - 0.026 14.9 0.2 0.068 13.5 0.1 1.7 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase K_oxygenase PF13434.1 gi|336253547|ref|YP_004596654.1| - 0.1 11.5 0.0 0.51 9.1 0.0 1.9 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) AlaDh_PNT_C PF01262.16 gi|336253547|ref|YP_004596654.1| - 0.13 11.7 0.0 0.24 10.9 0.0 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain HAD_2 PF13419.1 gi|336253548|ref|YP_004596655.1| - 1.5e-25 90.4 0.7 1.9e-25 90.1 0.5 1.0 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|336253548|ref|YP_004596655.1| - 6.9e-09 35.2 0.1 1.6e-08 34.1 0.1 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|336253548|ref|YP_004596655.1| - 4.1e-07 30.6 1.2 0.00081 19.8 0.1 2.1 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|336253548|ref|YP_004596655.1| - 5.3e-06 26.7 0.4 9.1e-06 25.9 0.3 1.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase DUF222 PF02720.12 gi|336253548|ref|YP_004596655.1| - 0.0022 17.2 0.2 0.0028 16.8 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF222) Hydrolase_6 PF13344.1 gi|336253548|ref|YP_004596655.1| - 0.032 14.1 0.0 0.22 11.4 0.0 2.0 2 1 0 2 2 2 0 Haloacid dehalogenase-like hydrolase Acid_phosphat_B PF03767.9 gi|336253548|ref|YP_004596655.1| - 0.074 12.4 0.0 0.36 10.1 0.0 1.9 2 0 0 2 2 2 0 HAD superfamily, subfamily IIIB (Acid phosphatase) Pyridox_oxidase PF01243.15 gi|336253549|ref|YP_004596656.1| - 8.2e-17 60.9 0.0 1.1e-16 60.5 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_ox_2 PF12900.2 gi|336253549|ref|YP_004596656.1| - 5.2e-15 55.5 0.2 6.3e-15 55.2 0.1 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase DUF385 PF04075.9 gi|336253549|ref|YP_004596656.1| - 0.004 17.1 0.5 0.0083 16.0 0.3 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF385) Glycos_transf_2 PF00535.21 gi|336253550|ref|YP_004596657.1| - 1.4e-29 102.9 0.0 2.7e-29 102.0 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|336253550|ref|YP_004596657.1| - 1.9e-18 67.0 0.1 8.7e-18 64.9 0.0 1.8 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|336253550|ref|YP_004596657.1| - 1.4e-09 37.4 0.0 7.8e-08 31.7 0.0 2.0 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.1 gi|336253550|ref|YP_004596657.1| - 1.7e-08 33.9 0.0 2.6e-08 33.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_trans_2_3 PF13632.1 gi|336253550|ref|YP_004596657.1| - 2.3e-06 27.4 0.0 2e-05 24.4 0.0 2.0 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_4 PF13704.1 gi|336253550|ref|YP_004596657.1| - 1e-05 25.7 0.2 7.6e-05 22.9 0.0 2.5 2 1 0 2 2 2 1 Glycosyl transferase family 2 NESP55 PF06390.7 gi|336253551|ref|YP_004596658.1| - 0.49 9.7 6.3 0.54 9.6 4.4 1.1 1 0 0 1 1 1 0 Neuroendocrine-specific golgi protein P55 (NESP55) Lamp PF01299.12 gi|336253551|ref|YP_004596658.1| - 1.7 7.6 5.0 1.9 7.5 3.5 1.0 1 0 0 1 1 1 0 Lysosome-associated membrane glycoprotein (Lamp) HhH-GPD PF00730.20 gi|336253552|ref|YP_004596659.1| - 1.1e-15 57.8 0.0 1.5e-15 57.4 0.0 1.1 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|336253552|ref|YP_004596659.1| - 4e-07 29.3 0.0 7.4e-07 28.5 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|336253552|ref|YP_004596659.1| - 0.0021 18.1 0.0 0.042 14.0 0.0 2.2 2 0 0 2 2 2 1 Helix-hairpin-helix domain DUF826 PF05696.6 gi|336253552|ref|YP_004596659.1| - 0.11 12.7 0.1 0.23 11.6 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF826) EndIII_4Fe-2S PF10576.4 gi|336253552|ref|YP_004596659.1| - 5.2 7.4 6.5 9.3 6.6 4.5 1.4 1 0 0 1 1 1 0 Iron-sulfur binding domain of endonuclease III Pectinesterase PF01095.14 gi|336253553|ref|YP_004596660.1| - 6.4e-77 258.0 0.0 7.3e-77 257.8 0.0 1.0 1 0 0 1 1 1 1 Pectinesterase Beta_helix PF13229.1 gi|336253553|ref|YP_004596660.1| - 0.075 12.7 0.0 0.13 11.9 0.0 1.5 1 1 0 1 1 1 0 Right handed beta helix region DUF2085 PF09858.4 gi|336253554|ref|YP_004596661.1| - 4.7e-10 39.3 0.1 8.2e-10 38.6 0.1 1.3 1 0 0 1 1 1 1 Predicted membrane protein (DUF2085) FUSC_2 PF13515.1 gi|336253554|ref|YP_004596661.1| - 0.018 14.9 7.8 0.062 13.2 4.3 2.0 1 1 0 1 1 1 0 Fusaric acid resistance protein-like DUF1576 PF07613.6 gi|336253554|ref|YP_004596661.1| - 0.092 12.2 0.8 0.59 9.6 0.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1576) TM2 PF05154.11 gi|336253555|ref|YP_004596662.1| - 1.1e-14 54.3 4.6 1.6e-14 53.8 3.2 1.2 1 0 0 1 1 1 1 TM2 domain zf-ribbon_3 PF13248.1 gi|336253555|ref|YP_004596662.1| - 1.2e-10 40.1 7.5 3.3e-05 22.9 0.6 2.2 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|336253555|ref|YP_004596662.1| - 2.2e-09 36.9 10.9 3.1e-09 36.5 7.5 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|336253555|ref|YP_004596662.1| - 1.3e-06 27.7 11.9 0.0033 16.8 1.2 2.5 2 0 0 2 2 2 2 zinc-ribbon domain UPF0547 PF10571.4 gi|336253555|ref|YP_004596662.1| - 6e-06 25.8 13.6 0.0043 16.6 1.3 2.2 2 0 0 2 2 2 2 Uncharacterised protein family UPF0547 DUF2116 PF09889.4 gi|336253555|ref|YP_004596662.1| - 0.00019 21.1 7.2 0.069 12.9 2.3 2.4 2 0 0 2 2 2 2 Uncharacterized protein containing a Zn-ribbon (DUF2116) YhfH PF14149.1 gi|336253555|ref|YP_004596662.1| - 0.00039 20.1 18.9 0.015 15.0 2.0 3.8 2 2 2 4 4 4 2 YhfH-like protein zf-C4pol PF14260.1 gi|336253555|ref|YP_004596662.1| - 0.003 17.5 9.2 0.085 12.8 1.2 2.3 2 0 0 2 2 2 2 C4-type zinc-finger of DNA polymerase delta DUF1936 PF09151.5 gi|336253555|ref|YP_004596662.1| - 0.071 12.6 1.7 9.2 5.8 0.1 3.0 2 1 0 2 2 2 0 Domain of unknown function (DUF1936) zf-P11 PF03854.9 gi|336253555|ref|YP_004596662.1| - 0.17 11.3 1.4 2.7 7.5 0.0 2.3 2 0 0 2 2 2 0 P-11 zinc finger C1_1 PF00130.17 gi|336253555|ref|YP_004596662.1| - 0.2 11.3 10.0 1.9 8.2 0.4 2.3 2 0 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-C4H2 PF10146.4 gi|336253555|ref|YP_004596662.1| - 0.23 11.4 7.8 2.4 8.1 1.8 2.1 1 1 1 2 2 2 0 Zinc finger-containing protein Zn_Tnp_IS1595 PF12760.2 gi|336253555|ref|YP_004596662.1| - 0.39 10.5 10.0 4.2 7.2 1.8 3.2 2 1 1 3 3 3 0 Transposase zinc-ribbon domain zf-C2HC5 PF06221.8 gi|336253555|ref|YP_004596662.1| - 0.54 10.0 12.3 1.9 8.3 1.1 2.3 1 1 1 2 2 2 0 Putative zinc finger motif, C2HC5-type DUF2769 PF10967.3 gi|336253555|ref|YP_004596662.1| - 0.83 10.0 8.9 1.3 9.3 1.0 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF2769) Lar_restr_allev PF14354.1 gi|336253555|ref|YP_004596662.1| - 1 9.7 9.0 0.27 11.5 3.5 2.1 1 1 1 2 2 2 0 Restriction alleviation protein Lar GCC2_GCC3 PF07699.8 gi|336253555|ref|YP_004596662.1| - 1.1 8.9 13.9 0.26 10.9 2.4 3.6 1 1 1 2 2 2 0 GCC2 and GCC3 Nudix_N_2 PF14803.1 gi|336253555|ref|YP_004596662.1| - 1.1 9.0 18.0 22 4.8 4.1 4.0 2 2 0 2 2 2 0 Nudix N-terminal zf-dskA_traR PF01258.12 gi|336253555|ref|YP_004596662.1| - 2.2 8.1 14.9 3.9 7.3 1.2 2.9 2 1 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger PolC_DP2 PF03833.8 gi|336253555|ref|YP_004596662.1| - 3.8 5.0 5.5 4.7 4.7 3.8 1.2 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 Ecl1 PF12855.2 gi|336253555|ref|YP_004596662.1| - 4 6.8 8.4 3.6 6.9 0.3 2.7 2 1 0 2 2 2 0 Life-span regulatory factor HypA PF01155.14 gi|336253555|ref|YP_004596662.1| - 4.7 6.9 11.9 2e+03 -1.6 8.3 2.2 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DUF35_N PF12172.3 gi|336253555|ref|YP_004596662.1| - 5.1 7.1 9.1 7.4 6.6 0.7 3.0 2 2 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) FYVE PF01363.16 gi|336253555|ref|YP_004596662.1| - 6.9 6.6 11.2 42 4.1 8.0 1.9 1 1 1 2 2 2 0 FYVE zinc finger zf-C3HC4_3 PF13920.1 gi|336253555|ref|YP_004596662.1| - 8.1 6.1 9.6 14 5.4 0.8 2.2 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) C1_4 PF07975.7 gi|336253555|ref|YP_004596662.1| - 8.8 6.4 10.6 40 4.3 7.4 2.0 1 1 0 1 1 1 0 TFIIH C1-like domain Ribosomal_L32p PF01783.18 gi|336253555|ref|YP_004596662.1| - 9.5 6.4 6.3 6.6 6.9 1.0 2.2 2 0 0 2 2 2 0 Ribosomal L32p protein family DAO PF01266.19 gi|336253556|ref|YP_004596663.1| - 3.5e-28 98.5 0.0 4.8e-28 98.0 0.0 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Mqo PF06039.10 gi|336253556|ref|YP_004596663.1| - 3.6e-22 78.2 0.0 1e-20 73.4 0.0 2.0 1 1 0 1 1 1 1 Malate:quinone oxidoreductase (Mqo) NAD_binding_9 PF13454.1 gi|336253556|ref|YP_004596663.1| - 9.3e-05 22.2 0.2 0.31 10.7 0.1 2.3 2 0 0 2 2 2 2 FAD-NAD(P)-binding Pyr_redox_2 PF07992.9 gi|336253556|ref|YP_004596663.1| - 0.0024 17.7 0.2 0.3 10.9 0.1 2.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|336253556|ref|YP_004596663.1| - 0.0045 17.3 0.2 3.8 7.9 0.0 2.7 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|336253556|ref|YP_004596663.1| - 0.0066 14.9 0.1 0.047 12.1 0.0 1.9 2 0 0 2 2 2 1 HI0933-like protein NAD_binding_8 PF13450.1 gi|336253556|ref|YP_004596663.1| - 0.0081 16.1 0.1 0.029 14.3 0.0 2.0 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|336253556|ref|YP_004596663.1| - 0.0097 14.7 0.0 0.013 14.3 0.0 1.1 1 0 0 1 1 1 1 FAD binding domain FecR PF04773.8 gi|336253556|ref|YP_004596663.1| - 0.019 15.1 0.1 0.045 13.9 0.0 1.5 1 0 0 1 1 1 0 FecR protein Amino_oxidase PF01593.19 gi|336253556|ref|YP_004596663.1| - 0.13 11.3 0.0 0.2 10.6 0.0 1.2 1 0 0 1 1 1 0 Flavin containing amine oxidoreductase Na_Ca_ex PF01699.19 gi|336253557|ref|YP_004596664.1| - 3.4e-18 65.5 20.2 2.7e-09 36.7 4.3 2.7 2 0 0 2 2 2 2 Sodium/calcium exchanger protein Zip PF02535.17 gi|336253558|ref|YP_004596665.1| - 7.6e-06 25.1 0.0 1.7e-05 24.0 0.0 1.6 1 1 0 1 1 1 1 ZIP Zinc transporter YwiC PF14256.1 gi|336253558|ref|YP_004596665.1| - 0.16 12.0 8.2 0.54 10.3 0.6 3.0 2 1 0 2 2 2 0 YwiC-like protein TPR_4 PF07721.9 gi|336253558|ref|YP_004596665.1| - 2.7 8.6 6.2 27 5.5 0.9 3.1 2 0 0 2 2 2 0 Tetratricopeptide repeat DUF2391 PF09622.5 gi|336253559|ref|YP_004596666.1| - 2.4e-06 26.8 0.3 3.6e-06 26.3 0.2 1.3 1 1 0 1 1 1 1 Putative integral membrane protein (DUF2391) Acetyltransf_1 PF00583.19 gi|336253560|ref|YP_004596667.1| - 2.6e-16 59.4 0.1 4.4e-16 58.6 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|336253560|ref|YP_004596667.1| - 2.2e-11 43.9 0.1 6.6e-11 42.3 0.0 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|336253560|ref|YP_004596667.1| - 1.2e-07 31.7 0.0 3.2e-07 30.3 0.0 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|336253560|ref|YP_004596667.1| - 5.5e-07 29.8 0.1 1e-06 28.9 0.0 1.5 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|336253560|ref|YP_004596667.1| - 7.1e-07 29.2 0.0 2.5e-06 27.5 0.0 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|336253560|ref|YP_004596667.1| - 3.2e-06 26.8 0.0 6e-06 25.9 0.0 1.4 1 1 0 1 1 1 1 FR47-like protein Acetyltransf_CG PF14542.1 gi|336253560|ref|YP_004596667.1| - 5.7e-05 22.9 0.0 0.00015 21.5 0.0 1.7 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.1 gi|336253560|ref|YP_004596667.1| - 0.00063 19.6 0.0 0.0012 18.6 0.0 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|336253560|ref|YP_004596667.1| - 0.0053 16.6 0.0 0.0093 15.8 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Mcm10 PF09332.6 gi|336253560|ref|YP_004596667.1| - 0.017 14.5 0.0 0.029 13.7 0.0 1.3 1 0 0 1 1 1 0 Mcm10 replication factor DNA_RNApol_7kD PF03604.8 gi|336253560|ref|YP_004596667.1| - 0.14 11.6 0.8 0.25 10.8 0.6 1.4 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit DUF3391 PF11871.3 gi|336253560|ref|YP_004596667.1| - 0.15 12.2 0.2 2.4 8.3 0.1 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF3391) A2L_zn_ribbon PF08792.5 gi|336253560|ref|YP_004596667.1| - 0.28 10.6 2.5 1.7 8.1 1.5 2.2 1 1 1 2 2 2 0 A2L zinc ribbon domain DUF4401 PF14351.1 gi|336253561|ref|YP_004596668.1| - 0.0026 16.7 1.8 0.0049 15.9 0.1 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF4401) AsnC_trans_reg PF01037.16 gi|336253562|ref|YP_004596669.1| - 4.4e-13 48.7 0.0 8.2e-13 47.8 0.0 1.5 1 0 0 1 1 1 1 AsnC family HTH_24 PF13412.1 gi|336253562|ref|YP_004596669.1| - 3.9e-11 42.1 0.2 1.2e-10 40.6 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|336253562|ref|YP_004596669.1| - 8.8e-08 31.6 0.2 3.5e-07 29.7 0.1 2.0 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|336253562|ref|YP_004596669.1| - 3.4e-07 29.9 0.1 9.6e-07 28.5 0.1 1.7 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|336253562|ref|YP_004596669.1| - 3.5e-07 29.7 0.0 1.1e-06 28.1 0.0 1.9 2 0 0 2 2 2 1 HTH domain HTH_AsnC-type PF13404.1 gi|336253562|ref|YP_004596669.1| - 4.8e-06 26.0 0.1 7.2e-06 25.4 0.1 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain GntR PF00392.16 gi|336253562|ref|YP_004596669.1| - 2.4e-05 23.6 0.1 6.5e-05 22.2 0.1 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_DeoR PF08220.7 gi|336253562|ref|YP_004596669.1| - 3.4e-05 23.2 0.1 0.00022 20.7 0.0 2.1 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain TrmB PF01978.14 gi|336253562|ref|YP_004596669.1| - 3.5e-05 23.4 0.0 6.5e-05 22.5 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_28 PF13518.1 gi|336253562|ref|YP_004596669.1| - 5.6e-05 23.0 0.0 0.00019 21.3 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|336253562|ref|YP_004596669.1| - 7.9e-05 22.2 0.0 0.00015 21.3 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|336253562|ref|YP_004596669.1| - 0.00043 19.9 0.0 0.0018 17.9 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.5 gi|336253562|ref|YP_004596669.1| - 0.00053 19.5 0.1 0.0013 18.3 0.1 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_10 PF04967.7 gi|336253562|ref|YP_004596669.1| - 0.00093 18.7 0.0 0.0022 17.5 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain DUF2042 PF09743.4 gi|336253562|ref|YP_004596669.1| - 0.0024 17.2 0.1 0.0067 15.7 0.0 1.7 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2042) HTH_23 PF13384.1 gi|336253562|ref|YP_004596669.1| - 0.0032 17.0 0.0 0.0065 16.0 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain Fe_dep_repress PF01325.14 gi|336253562|ref|YP_004596669.1| - 0.0034 17.2 0.0 0.0073 16.2 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_Crp_2 PF13545.1 gi|336253562|ref|YP_004596669.1| - 0.0079 15.9 0.0 0.013 15.2 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_41 PF14502.1 gi|336253562|ref|YP_004596669.1| - 0.0091 15.5 0.1 0.037 13.6 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_7 PF02796.10 gi|336253562|ref|YP_004596669.1| - 0.0091 15.8 0.0 0.029 14.2 0.0 1.8 2 0 0 2 2 1 1 Helix-turn-helix domain of resolvase HTH_Tnp_ISL3 PF13542.1 gi|336253562|ref|YP_004596669.1| - 0.0097 15.0 0.0 0.058 12.5 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 HTH_36 PF13730.1 gi|336253562|ref|YP_004596669.1| - 0.012 15.6 0.0 0.02 15.0 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_34 PF13601.1 gi|336253562|ref|YP_004596669.1| - 0.014 15.3 0.1 0.036 14.1 0.0 1.6 2 0 0 2 2 1 0 Winged helix DNA-binding domain HTH_40 PF14493.1 gi|336253562|ref|YP_004596669.1| - 0.02 15.0 0.0 0.045 13.9 0.0 1.6 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_38 PF13936.1 gi|336253562|ref|YP_004596669.1| - 0.026 14.0 0.0 0.066 12.7 0.0 1.7 2 0 0 2 2 1 0 Helix-turn-helix domain GerE PF00196.14 gi|336253562|ref|YP_004596669.1| - 0.029 13.6 0.1 0.24 10.7 0.0 2.1 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family Rrf2 PF02082.15 gi|336253562|ref|YP_004596669.1| - 0.037 14.1 0.1 0.12 12.4 0.0 1.9 3 0 0 3 3 1 0 Transcriptional regulator Mga PF05043.8 gi|336253562|ref|YP_004596669.1| - 0.039 14.2 0.1 0.15 12.3 0.0 1.9 2 0 0 2 2 2 0 Mga helix-turn-helix domain DUF742 PF05331.6 gi|336253562|ref|YP_004596669.1| - 0.061 12.9 0.1 0.21 11.1 0.0 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF742) HTH_1 PF00126.22 gi|336253562|ref|YP_004596669.1| - 0.068 12.9 0.1 0.17 11.6 0.0 1.7 2 0 0 2 2 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_29 PF13551.1 gi|336253562|ref|YP_004596669.1| - 0.11 12.6 0.0 0.56 10.3 0.0 2.0 3 0 0 3 3 3 0 Winged helix-turn helix Sigma70_r4_2 PF08281.7 gi|336253562|ref|YP_004596669.1| - 0.13 11.7 0.0 0.26 10.7 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 Pribosyltran PF00156.22 gi|336253563|ref|YP_004596670.1| - 1.3e-20 73.3 1.1 1.8e-20 72.9 0.8 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|336253563|ref|YP_004596670.1| - 0.00011 21.4 0.1 0.00018 20.7 0.1 1.3 1 1 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|336253563|ref|YP_004596670.1| - 0.0037 16.5 0.2 0.0079 15.5 0.1 1.5 1 1 0 1 1 1 1 Phosphoribosyl transferase IF-2 PF11987.3 gi|336253563|ref|YP_004596670.1| - 0.04 13.7 0.2 0.062 13.1 0.2 1.3 1 0 0 1 1 1 0 Translation-initiation factor 2 GATase_3 PF07685.9 gi|336253563|ref|YP_004596670.1| - 0.084 12.4 0.1 0.13 11.8 0.0 1.3 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain ASRT PF07100.6 gi|336253563|ref|YP_004596670.1| - 0.12 12.1 0.0 0.19 11.4 0.0 1.3 1 0 0 1 1 1 0 Anabaena sensory rhodopsin transducer Xan_ur_permease PF00860.15 gi|336253564|ref|YP_004596671.1| - 1.8e-87 293.3 43.2 2.6e-87 292.8 29.9 1.2 1 0 0 1 1 1 1 Permease family adh_short PF00106.20 gi|336253565|ref|YP_004596672.1| - 2.7e-33 115.2 3.6 3.2e-33 114.9 2.5 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|336253565|ref|YP_004596672.1| - 1.5e-28 100.1 0.0 4e-28 98.7 0.0 1.6 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|336253565|ref|YP_004596672.1| - 2e-15 56.9 1.2 2.8e-15 56.4 0.9 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|336253565|ref|YP_004596672.1| - 2.2e-06 27.3 0.4 5.9e-06 25.8 0.3 1.7 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|336253565|ref|YP_004596672.1| - 0.00012 20.8 0.2 0.00017 20.4 0.1 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|336253565|ref|YP_004596672.1| - 0.0061 15.4 0.1 0.01 14.7 0.1 1.4 1 1 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.7 gi|336253565|ref|YP_004596672.1| - 0.023 13.6 0.0 0.031 13.2 0.0 1.2 1 0 0 1 1 1 0 Male sterility protein 2-Hacid_dh_C PF02826.14 gi|336253565|ref|YP_004596672.1| - 0.044 12.9 0.0 0.066 12.3 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Aldedh PF00171.17 gi|336253566|ref|YP_004596673.1| - 7.4e-160 532.2 2.2 8.3e-160 532.1 1.5 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.9 gi|336253566|ref|YP_004596673.1| - 0.014 14.1 0.0 0.024 13.3 0.0 1.3 1 0 0 1 1 1 0 Acyl-CoA reductase (LuxC) HTH_5 PF01022.15 gi|336253567|ref|YP_004596674.1| - 4.6e-05 23.0 0.1 0.00041 19.9 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|336253567|ref|YP_004596674.1| - 0.00018 21.1 0.2 0.00048 19.7 0.1 1.7 1 0 0 1 1 1 1 MarR family DUF1724 PF08350.5 gi|336253567|ref|YP_004596674.1| - 0.00032 20.1 0.0 0.00055 19.4 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_IclR PF09339.5 gi|336253567|ref|YP_004596674.1| - 0.0007 19.1 0.4 0.0026 17.3 0.0 2.2 2 0 0 2 2 2 1 IclR helix-turn-helix domain Trp_repressor PF01371.14 gi|336253567|ref|YP_004596674.1| - 0.0025 17.6 0.1 0.028 14.3 0.0 2.3 2 0 0 2 2 2 1 Trp repressor protein HTH_24 PF13412.1 gi|336253567|ref|YP_004596674.1| - 0.0036 16.6 0.1 0.012 14.9 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|336253567|ref|YP_004596674.1| - 0.005 16.6 1.0 0.077 12.8 0.1 2.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_45 PF14947.1 gi|336253567|ref|YP_004596674.1| - 0.0061 16.3 0.0 0.01 15.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_23 PF13384.1 gi|336253567|ref|YP_004596674.1| - 0.0068 16.0 0.1 0.023 14.3 0.0 1.9 1 0 0 1 1 1 1 Homeodomain-like domain HTH_27 PF13463.1 gi|336253567|ref|YP_004596674.1| - 0.0075 16.5 0.6 0.039 14.2 0.1 2.3 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_26 PF13443.1 gi|336253567|ref|YP_004596674.1| - 0.017 15.3 0.1 0.063 13.4 0.0 2.0 2 0 0 2 2 2 0 Cro/C1-type HTH DNA-binding domain HTH_Crp_2 PF13545.1 gi|336253567|ref|YP_004596674.1| - 0.025 14.3 0.0 0.071 12.9 0.0 1.8 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain MarR PF01047.17 gi|336253567|ref|YP_004596674.1| - 0.038 13.7 0.0 0.086 12.5 0.0 1.6 1 0 0 1 1 1 0 MarR family HTH_7 PF02796.10 gi|336253567|ref|YP_004596674.1| - 0.04 13.7 0.0 0.11 12.3 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase Crp PF00325.15 gi|336253567|ref|YP_004596674.1| - 0.062 12.7 0.2 0.12 11.8 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, crp family EamA PF00892.15 gi|336253568|ref|YP_004596675.1| - 2.1e-30 105.3 32.4 2e-17 63.3 7.7 2.1 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|336253568|ref|YP_004596675.1| - 2.1e-09 37.5 5.0 2.1e-09 37.5 3.5 3.7 2 2 2 4 4 4 2 Multidrug resistance efflux transporter TPT PF03151.11 gi|336253568|ref|YP_004596675.1| - 0.0061 16.2 14.8 0.09 12.4 1.9 2.5 2 1 0 2 2 2 2 Triose-phosphate Transporter family UPF0546 PF10639.4 gi|336253568|ref|YP_004596675.1| - 0.19 11.5 3.9 1.2 9.0 0.5 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0546 eRF1_2 PF03464.10 gi|336253569|ref|YP_004596676.1| - 1.7e-21 76.9 0.0 2.6e-21 76.3 0.0 1.2 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.10 gi|336253569|ref|YP_004596676.1| - 1.5e-16 60.6 0.0 1.1e-15 57.8 0.0 2.2 1 1 0 1 1 1 1 eRF1 domain 3 Metal_resist PF13801.1 gi|336253569|ref|YP_004596676.1| - 0.13 12.2 10.2 0.043 13.8 3.8 2.2 2 0 0 2 2 2 0 Heavy-metal resistance zinc_ribbon_4 PF13717.1 gi|336253570|ref|YP_004596677.1| - 0.029 14.0 0.2 0.065 12.9 0.1 1.6 1 0 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|336253570|ref|YP_004596677.1| - 0.036 13.6 0.2 0.082 12.4 0.1 1.6 1 0 0 1 1 1 0 zinc-ribbon domain DUF4147 PF13660.1 gi|336253571|ref|YP_004596678.1| - 8e-83 277.2 3.1 8e-83 277.2 2.2 2.0 3 0 0 3 3 3 1 Domain of unknown function (DUF4147) MOFRL PF05161.8 gi|336253571|ref|YP_004596678.1| - 6.6e-27 93.7 1.3 1.7e-26 92.4 0.9 1.7 1 0 0 1 1 1 1 MOFRL family CbiG_N PF11760.3 gi|336253571|ref|YP_004596678.1| - 0.04 13.6 0.0 0.1 12.2 0.0 1.7 1 0 0 1 1 1 0 Cobalamin synthesis G N-terminal MFS_1 PF07690.11 gi|336253572|ref|YP_004596679.1| - 5.6e-47 160.1 54.2 3.8e-35 121.2 14.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|336253572|ref|YP_004596679.1| - 4.1e-05 22.1 20.0 4.1e-05 22.1 13.8 2.5 1 1 1 2 2 2 1 MFS/sugar transport protein MFS_1_like PF12832.2 gi|336253572|ref|YP_004596679.1| - 0.26 11.0 13.5 2.8 7.7 0.4 4.6 4 1 0 4 4 4 0 MFS_1 like family PTA_PTB PF01515.14 gi|336253573|ref|YP_004596680.1| - 1.5e-94 316.6 0.0 2.1e-94 316.1 0.0 1.2 1 0 0 1 1 1 1 Phosphate acetyl/butaryl transferase Malic_M PF03949.10 gi|336253573|ref|YP_004596680.1| - 6.2e-68 229.1 1.7 8.9e-68 228.5 1.2 1.2 1 0 0 1 1 1 1 Malic enzyme, NAD binding domain malic PF00390.14 gi|336253573|ref|YP_004596680.1| - 1e-28 100.1 0.0 2e-26 92.7 0.0 2.5 1 1 0 1 1 1 1 Malic enzyme, N-terminal domain Peptidase_M14 PF00246.19 gi|336253575|ref|YP_004596682.1| - 9.9e-15 54.8 0.0 1.5e-14 54.3 0.0 1.3 1 0 0 1 1 1 1 Zinc carboxypeptidase Acyl-CoA_dh_1 PF00441.19 gi|336253576|ref|YP_004596683.1| - 8.8e-53 178.4 4.4 1.3e-52 177.8 3.1 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|336253576|ref|YP_004596683.1| - 1.8e-32 112.2 0.2 5e-32 110.8 0.1 1.8 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.6 gi|336253576|ref|YP_004596683.1| - 4.2e-24 85.2 7.7 8.8e-24 84.2 5.3 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|336253576|ref|YP_004596683.1| - 2.2e-19 68.7 0.1 5.1e-19 67.5 0.0 1.7 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain MM_CoA_mutase PF01642.17 gi|336253577|ref|YP_004596684.1| - 1.8e-187 623.5 0.4 2.1e-187 623.3 0.3 1.0 1 0 0 1 1 1 1 Methylmalonyl-CoA mutase DUF3037 PF11236.3 gi|336253577|ref|YP_004596684.1| - 0.08 12.9 0.4 0.75 9.8 0.1 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3037) Abhydrolase_6 PF12697.2 gi|336253578|ref|YP_004596685.1| - 1.1e-37 130.0 2.6 1.3e-37 129.8 1.8 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|336253578|ref|YP_004596685.1| - 1.2e-21 77.0 0.0 1.9e-21 76.3 0.0 1.4 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|336253578|ref|YP_004596685.1| - 1.8e-19 70.2 0.0 5.9e-19 68.5 0.0 1.7 1 1 0 1 1 1 1 alpha/beta hydrolase fold UPF0227 PF05728.7 gi|336253578|ref|YP_004596685.1| - 4e-05 23.4 0.0 0.00012 21.8 0.0 1.7 2 0 0 2 2 2 1 Uncharacterised protein family (UPF0227) Ndr PF03096.9 gi|336253578|ref|YP_004596685.1| - 0.00081 17.9 0.0 0.0016 16.9 0.0 1.4 2 0 0 2 2 2 1 Ndr family Esterase PF00756.15 gi|336253578|ref|YP_004596685.1| - 0.017 14.5 0.0 0.024 14.0 0.0 1.4 1 1 0 1 1 1 0 Putative esterase DUF2920 PF11144.3 gi|336253578|ref|YP_004596685.1| - 0.081 11.9 0.0 0.16 10.9 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2920) Hydrolase_4 PF12146.3 gi|336253578|ref|YP_004596685.1| - 0.12 12.2 0.0 0.36 10.7 0.0 1.9 1 1 0 1 1 1 0 Putative lysophospholipase Ser_hydrolase PF06821.8 gi|336253578|ref|YP_004596685.1| - 0.13 11.8 0.0 3 7.4 0.0 2.1 2 0 0 2 2 2 0 Serine hydrolase adh_short_C2 PF13561.1 gi|336253579|ref|YP_004596686.1| - 1.4e-26 93.8 0.0 1.6e-26 93.5 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|336253579|ref|YP_004596686.1| - 1.8e-19 70.2 0.3 2.7e-19 69.7 0.2 1.2 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|336253579|ref|YP_004596686.1| - 4.7e-09 36.1 0.1 7.6e-09 35.4 0.1 1.2 1 0 0 1 1 1 1 KR domain 3HCDH_N PF02737.13 gi|336253579|ref|YP_004596686.1| - 0.0079 15.8 0.1 0.015 14.9 0.0 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Eno-Rase_NADH_b PF12242.3 gi|336253579|ref|YP_004596686.1| - 0.032 14.0 0.2 0.071 12.9 0.1 1.5 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase Cupin_2 PF07883.6 gi|336253580|ref|YP_004596687.1| - 3.2e-16 58.5 0.4 4.5e-16 58.1 0.3 1.2 1 0 0 1 1 1 1 Cupin domain Cupin_3 PF05899.7 gi|336253580|ref|YP_004596687.1| - 0.001 18.3 0.0 0.0015 17.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) MannoseP_isomer PF01050.13 gi|336253580|ref|YP_004596687.1| - 0.0012 18.4 0.0 0.0014 18.2 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase AraC_binding PF02311.14 gi|336253580|ref|YP_004596687.1| - 0.0013 18.4 0.0 0.0017 18.0 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain CDO_I PF05995.7 gi|336253580|ref|YP_004596687.1| - 0.0026 16.9 0.0 0.021 14.0 0.0 1.9 1 1 0 1 1 1 1 Cysteine dioxygenase type I DUF1637 PF07847.7 gi|336253580|ref|YP_004596687.1| - 0.0027 17.0 0.0 0.011 15.1 0.0 1.8 1 1 1 2 2 2 1 Protein of unknown function (DUF1637) HutD PF05962.6 gi|336253580|ref|YP_004596687.1| - 0.035 13.8 0.0 0.043 13.5 0.0 1.1 1 0 0 1 1 1 0 HutD AraC_binding_2 PF14525.1 gi|336253580|ref|YP_004596687.1| - 0.036 13.6 0.0 0.04 13.4 0.0 1.3 1 0 0 1 1 1 0 AraC-binding-like domain PRO8NT PF08082.6 gi|336253580|ref|YP_004596687.1| - 0.14 11.8 0.0 0.19 11.3 0.0 1.2 1 0 0 1 1 1 0 PRO8NT (NUC069), PrP8 N-terminal domain FAA_hydrolase PF01557.13 gi|336253581|ref|YP_004596688.1| - 2.4e-49 167.7 0.1 3e-49 167.4 0.1 1.1 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family PALP PF00291.20 gi|336253582|ref|YP_004596689.1| - 4.4e-69 233.0 2.1 5.6e-69 232.6 1.5 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme NTP_transf_3 PF12804.2 gi|336253582|ref|YP_004596689.1| - 0.089 12.8 1.6 3 7.9 0.0 2.8 2 1 0 2 2 2 0 MobA-like NTP transferase domain Metallophos_2 PF12850.2 gi|336253583|ref|YP_004596690.1| - 1.3e-08 34.8 0.1 2.8e-08 33.7 0.1 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|336253583|ref|YP_004596690.1| - 4.7e-07 29.4 1.4 2.7e-05 23.6 1.0 2.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.1 gi|336253583|ref|YP_004596690.1| - 1.7e-06 27.4 0.0 2.8e-06 26.6 0.0 1.3 1 1 0 1 1 1 1 Metallophosphoesterase, calcineurin superfamily zinc-ribbons_6 PF07191.7 gi|336253584|ref|YP_004596691.1| - 0.00028 20.5 0.3 0.00034 20.3 0.2 1.2 1 0 0 1 1 1 1 zinc-ribbons HypA PF01155.14 gi|336253584|ref|YP_004596691.1| - 0.0012 18.5 1.0 0.0012 18.4 0.7 1.0 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family DUF1272 PF06906.6 gi|336253584|ref|YP_004596691.1| - 0.0057 16.4 3.9 0.011 15.5 2.7 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF1272) Zn-ribbon_8 PF09723.5 gi|336253584|ref|YP_004596691.1| - 0.008 16.1 5.6 0.015 15.2 3.9 1.5 1 1 0 1 1 1 1 Zinc ribbon domain zf-C4_Topoisom PF01396.14 gi|336253584|ref|YP_004596691.1| - 0.0083 15.6 0.9 0.57 9.7 0.1 2.1 2 0 0 2 2 2 1 Topoisomerase DNA binding C4 zinc finger zf-P11 PF03854.9 gi|336253584|ref|YP_004596691.1| - 0.016 14.6 0.3 0.021 14.3 0.2 1.1 1 0 0 1 1 1 0 P-11 zinc finger Ogr_Delta PF04606.7 gi|336253584|ref|YP_004596691.1| - 0.021 14.4 1.3 0.41 10.3 0.0 2.1 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger DZR PF12773.2 gi|336253584|ref|YP_004596691.1| - 0.023 14.5 1.8 0.047 13.5 1.3 1.5 1 1 0 1 1 1 0 Double zinc ribbon zf-C3HC4_3 PF13920.1 gi|336253584|ref|YP_004596691.1| - 0.027 14.1 1.1 0.03 13.9 0.7 1.1 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Prok-RING_1 PF14446.1 gi|336253584|ref|YP_004596691.1| - 0.031 13.9 1.4 0.049 13.3 1.0 1.3 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 DnaJ_CXXCXGXG PF00684.14 gi|336253584|ref|YP_004596691.1| - 0.05 13.6 0.6 0.06 13.4 0.4 1.2 1 0 0 1 1 1 0 DnaJ central domain zf-IS66 PF13005.2 gi|336253584|ref|YP_004596691.1| - 0.075 13.0 5.3 0.32 11.0 0.5 2.1 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 RNHCP PF12647.2 gi|336253584|ref|YP_004596691.1| - 0.078 12.8 0.5 0.079 12.7 0.4 1.1 1 0 0 1 1 1 0 RNHCP domain Zn_Tnp_IS1595 PF12760.2 gi|336253584|ref|YP_004596691.1| - 0.088 12.6 4.7 3.7 7.4 3.4 2.0 1 1 1 2 2 2 0 Transposase zinc-ribbon domain DUF2039 PF10217.4 gi|336253584|ref|YP_004596691.1| - 0.088 12.8 0.6 0.09 12.7 0.4 1.0 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2039) zf-Mss51 PF13824.1 gi|336253584|ref|YP_004596691.1| - 0.11 12.3 4.8 1.3 8.9 2.9 2.0 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 UPF0547 PF10571.4 gi|336253584|ref|YP_004596691.1| - 0.14 11.9 5.1 0.31 10.7 3.5 1.6 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 Zn_ribbon_recom PF13408.1 gi|336253584|ref|YP_004596691.1| - 0.15 12.3 1.2 0.3 11.3 0.0 1.9 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain DNA_RNApol_7kD PF03604.8 gi|336253584|ref|YP_004596691.1| - 0.16 11.4 4.0 0.34 10.4 2.7 1.6 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit GFA PF04828.9 gi|336253584|ref|YP_004596691.1| - 0.17 11.8 1.2 1.8 8.5 0.8 1.9 1 1 0 1 1 1 0 Glutathione-dependent formaldehyde-activating enzyme SprT-like PF10263.4 gi|336253584|ref|YP_004596691.1| - 0.22 11.1 1.3 0.25 10.9 0.9 1.1 1 0 0 1 1 1 0 SprT-like family Zn_Tnp_IS91 PF14319.1 gi|336253584|ref|YP_004596691.1| - 0.27 10.7 1.4 0.32 10.5 1.0 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain zf-ribbon_3 PF13248.1 gi|336253584|ref|YP_004596691.1| - 0.48 9.7 3.9 1.5 8.1 2.8 1.7 1 1 0 1 1 1 0 zinc-ribbon domain DUF983 PF06170.7 gi|336253584|ref|YP_004596691.1| - 0.64 10.1 5.0 0.95 9.6 0.2 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF983) Sgf11 PF08209.6 gi|336253584|ref|YP_004596691.1| - 0.93 8.8 3.8 6.7 6.1 0.2 2.4 1 1 1 2 2 2 0 Sgf11 (transcriptional regulation protein) zf-HYPF PF07503.7 gi|336253584|ref|YP_004596691.1| - 1.1 8.7 4.9 60 3.1 3.4 2.2 1 1 0 1 1 1 0 HypF finger DUF35_N PF12172.3 gi|336253584|ref|YP_004596691.1| - 1.6 8.7 5.1 8.9 6.3 3.5 2.0 1 1 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) PhnA_Zn_Ribbon PF08274.7 gi|336253584|ref|YP_004596691.1| - 5.5 6.8 8.2 11 5.8 1.8 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon Rubredoxin PF00301.15 gi|336253584|ref|YP_004596691.1| - 8.5 6.3 6.8 3.2e+02 1.3 4.7 2.3 1 1 0 1 1 1 0 Rubredoxin C1_3 PF07649.7 gi|336253584|ref|YP_004596691.1| - 8.6 6.4 6.6 2.5 8.1 0.7 2.1 1 1 1 2 2 2 0 C1-like domain DUF3040 PF11239.3 gi|336253585|ref|YP_004596692.1| - 0.078 13.0 1.6 0.15 12.0 1.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) IncA PF04156.9 gi|336253585|ref|YP_004596692.1| - 1.6 8.2 3.3 2.7 7.5 2.3 1.3 1 0 0 1 1 1 0 IncA protein AP_endonuc_2 PF01261.19 gi|336253586|ref|YP_004596693.1| - 5.6e-23 81.3 4.2 7.4e-23 80.9 2.9 1.3 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Zn_Tnp_IS1595 PF12760.2 gi|336253587|ref|YP_004596694.1| - 0.013 15.3 0.9 0.028 14.2 0.6 1.6 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Rubredoxin PF00301.15 gi|336253587|ref|YP_004596694.1| - 0.03 14.2 0.8 0.03 14.2 0.5 2.1 2 0 0 2 2 2 0 Rubredoxin rve_3 PF13683.1 gi|336253587|ref|YP_004596694.1| - 0.091 12.3 0.0 0.12 11.8 0.0 1.2 1 0 0 1 1 1 0 Integrase core domain Zn_Tnp_IS1 PF03811.8 gi|336253587|ref|YP_004596694.1| - 0.14 11.6 0.1 0.14 11.6 0.1 1.7 2 0 0 2 2 2 0 InsA N-terminal domain zf-MIZ PF02891.15 gi|336253587|ref|YP_004596694.1| - 4.9 6.7 7.7 5.9 6.4 1.3 2.2 1 1 1 2 2 2 0 MIZ/SP-RING zinc finger Spermine_synth PF01564.12 gi|336253588|ref|YP_004596695.1| - 5e-10 38.7 0.1 7.7e-10 38.1 0.0 1.3 1 0 0 1 1 1 1 Spermine/spermidine synthase Methyltransf_26 PF13659.1 gi|336253588|ref|YP_004596695.1| - 1.7e-05 24.7 0.0 0.00016 21.6 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.9 gi|336253588|ref|YP_004596695.1| - 0.0035 16.7 0.0 0.006 15.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_18 PF12847.2 gi|336253588|ref|YP_004596695.1| - 0.0041 17.6 0.0 0.0079 16.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_30 PF05430.6 gi|336253588|ref|YP_004596695.1| - 0.048 13.3 0.0 0.086 12.5 0.0 1.3 1 0 0 1 1 1 0 S-adenosyl-L-methionine-dependent methyltransferase PrgI PF12666.2 gi|336253588|ref|YP_004596695.1| - 2.2 8.4 9.1 6.2 7.0 0.6 3.4 3 0 0 3 3 3 0 PrgI family protein DUF420 PF04238.7 gi|336253589|ref|YP_004596696.1| - 0.16 11.9 2.1 0.19 11.6 1.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF420) PsbM PF05151.7 gi|336253589|ref|YP_004596696.1| - 3.5 7.2 6.7 0.33 10.5 1.4 1.7 2 0 0 2 2 2 0 Photosystem II reaction centre M protein (PsbM) Polyketide_cyc2 PF10604.4 gi|336253590|ref|YP_004596697.1| - 0.00054 20.1 1.2 0.0011 19.1 0.8 1.6 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Cytochrom_B559a PF00284.15 gi|336253592|ref|YP_004596699.1| - 0.11 12.0 0.1 0.19 11.2 0.0 1.4 1 0 0 1 1 1 0 Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit ArsA_ATPase PF02374.10 gi|336253593|ref|YP_004596700.1| - 4.3e-73 246.0 0.0 4.9e-73 245.8 0.0 1.0 1 0 0 1 1 1 1 Anion-transporting ATPase CbiA PF01656.18 gi|336253593|ref|YP_004596700.1| - 1.4e-11 44.1 0.0 2.5e-10 40.0 0.0 2.1 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|336253593|ref|YP_004596700.1| - 2.5e-05 24.2 0.0 7.7e-05 22.6 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|336253593|ref|YP_004596700.1| - 0.0014 19.4 0.4 0.018 15.8 0.3 2.4 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|336253593|ref|YP_004596700.1| - 0.0018 17.7 0.4 0.0096 15.3 0.2 2.2 2 1 0 2 2 2 1 AAA domain AAA_26 PF13500.1 gi|336253593|ref|YP_004596700.1| - 0.003 17.2 0.1 0.077 12.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain KaiC PF06745.8 gi|336253593|ref|YP_004596700.1| - 0.003 16.7 0.0 0.0053 15.9 0.0 1.4 1 1 0 1 1 1 1 KaiC AAA_10 PF12846.2 gi|336253593|ref|YP_004596700.1| - 0.006 16.0 0.0 0.0073 15.7 0.0 1.2 1 0 0 1 1 1 1 AAA-like domain PhoH PF02562.11 gi|336253593|ref|YP_004596700.1| - 0.0076 15.5 0.1 0.014 14.6 0.0 1.5 1 1 0 1 1 1 1 PhoH-like protein AAA_16 PF13191.1 gi|336253593|ref|YP_004596700.1| - 0.011 15.6 0.1 0.029 14.3 0.1 2.0 1 1 0 1 1 1 0 AAA ATPase domain Fer4_NifH PF00142.13 gi|336253593|ref|YP_004596700.1| - 0.034 13.3 0.1 0.079 12.1 0.0 1.6 2 0 0 2 2 2 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family NB-ARC PF00931.17 gi|336253593|ref|YP_004596700.1| - 0.049 12.4 0.2 0.11 11.3 0.1 1.5 1 0 0 1 1 1 0 NB-ARC domain Zeta_toxin PF06414.7 gi|336253593|ref|YP_004596700.1| - 0.049 12.7 0.2 0.096 11.7 0.0 1.6 2 0 0 2 2 2 0 Zeta toxin Tir_receptor_N PF07490.6 gi|336253593|ref|YP_004596700.1| - 0.05 13.2 0.1 0.08 12.5 0.1 1.3 1 0 0 1 1 1 0 Translocated intimin receptor (Tir) N-terminus AAA_33 PF13671.1 gi|336253593|ref|YP_004596700.1| - 0.077 12.8 0.0 0.29 11.0 0.0 2.3 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|336253593|ref|YP_004596700.1| - 0.084 12.4 0.0 0.15 11.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain ArgK PF03308.11 gi|336253593|ref|YP_004596700.1| - 0.1 11.3 0.1 0.2 10.4 0.1 1.4 1 0 0 1 1 1 0 ArgK protein SRP54 PF00448.17 gi|336253593|ref|YP_004596700.1| - 0.16 11.3 0.1 0.43 9.9 0.0 1.6 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain cwf21 PF08312.7 gi|336253593|ref|YP_004596700.1| - 6.2 6.7 8.6 33 4.4 3.5 3.1 2 1 0 2 2 2 0 cwf21 domain CstA PF02554.9 gi|336253594|ref|YP_004596701.1| - 1.1e-123 412.7 21.9 1.1e-123 412.7 15.2 1.5 2 0 0 2 2 2 1 Carbon starvation protein CstA DUF4161 PF13722.1 gi|336253594|ref|YP_004596701.1| - 6.7e-32 110.4 3.8 6.7e-32 110.4 2.6 4.0 3 1 1 4 4 4 1 C-terminal domain on CstA (DUF4161) MMR_HSR1_C PF08438.5 gi|336253597|ref|YP_004596704.1| - 8.2e-34 116.1 0.0 1.6e-33 115.1 0.0 1.5 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.18 gi|336253597|ref|YP_004596704.1| - 7.9e-18 64.5 0.0 4.5e-17 62.0 0.0 2.2 1 1 0 1 1 1 1 50S ribosome-binding GTPase TGS PF02824.16 gi|336253597|ref|YP_004596704.1| - 4.6e-08 32.7 0.0 1e-07 31.6 0.0 1.6 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.13 gi|336253597|ref|YP_004596704.1| - 2.7e-06 26.7 0.0 0.00042 19.6 0.0 2.6 3 0 0 3 3 3 1 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|336253597|ref|YP_004596704.1| - 0.0088 15.4 0.0 0.023 14.1 0.0 1.7 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain Miro PF08477.8 gi|336253597|ref|YP_004596704.1| - 0.016 15.6 0.0 0.19 12.2 0.0 2.5 2 1 0 2 2 2 0 Miro-like protein Ras PF00071.17 gi|336253597|ref|YP_004596704.1| - 0.028 13.8 0.0 2.4 7.4 0.0 2.3 2 0 0 2 2 2 0 Ras family Dynamin_N PF00350.18 gi|336253597|ref|YP_004596704.1| - 0.046 13.5 0.3 0.4 10.4 0.0 2.5 3 1 1 4 4 4 0 Dynamin family Cation_ATPase_C PF00689.16 gi|336253598|ref|YP_004596705.1| - 0.0016 17.9 1.3 0.0018 17.8 0.9 1.1 1 0 0 1 1 1 1 Cation transporting ATPase, C-terminus Ferric_reduct PF01794.14 gi|336253598|ref|YP_004596705.1| - 0.0056 16.7 0.2 0.0065 16.5 0.2 1.1 1 0 0 1 1 1 1 Ferric reductase like transmembrane component DUF1282 PF06930.7 gi|336253598|ref|YP_004596705.1| - 0.013 15.1 1.0 0.016 14.8 0.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1282) DUF2976 PF11190.3 gi|336253598|ref|YP_004596705.1| - 0.016 14.6 0.4 0.021 14.3 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2976) DUF2417 PF10329.4 gi|336253598|ref|YP_004596705.1| - 0.085 12.2 0.1 0.11 11.8 0.0 1.3 1 1 0 1 1 1 0 Region of unknown function (DUF2417) Peptidase_M50B PF13398.1 gi|336253598|ref|YP_004596705.1| - 0.21 10.9 6.5 0.56 9.5 4.5 1.7 1 1 0 1 1 1 0 Peptidase M50B-like Aminotran_5 PF00266.14 gi|336253599|ref|YP_004596706.1| - 7.7e-20 70.9 0.0 9.1e-20 70.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Methyltransf_11 PF08241.7 gi|336253600|ref|YP_004596707.1| - 1.5e-20 73.4 0.0 2.2e-20 72.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|336253600|ref|YP_004596707.1| - 9.5e-16 57.9 0.0 1.2e-15 57.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|336253600|ref|YP_004596707.1| - 5.5e-13 48.7 0.0 6.6e-13 48.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|336253600|ref|YP_004596707.1| - 2.5e-11 43.9 0.0 4.2e-11 43.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|336253600|ref|YP_004596707.1| - 4.3e-10 39.6 0.1 5.8e-10 39.2 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|336253600|ref|YP_004596707.1| - 3.3e-09 37.0 0.0 5.2e-09 36.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|336253600|ref|YP_004596707.1| - 9.2e-09 35.8 0.0 1.5e-08 35.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|336253600|ref|YP_004596707.1| - 5.2e-08 32.3 0.0 6.7e-08 31.9 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MetW PF07021.7 gi|336253600|ref|YP_004596707.1| - 9.5e-05 21.8 0.0 0.00014 21.3 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_28 PF02636.12 gi|336253600|ref|YP_004596707.1| - 0.013 14.9 0.0 0.02 14.3 0.0 1.2 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase RrnaAD PF00398.15 gi|336253600|ref|YP_004596707.1| - 0.09 11.7 0.0 0.13 11.2 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase MEDS PF14417.1 gi|336253602|ref|YP_004596709.1| - 1e-30 106.2 0.3 2.8e-30 104.7 0.2 1.7 1 0 0 1 1 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain HATPase_c PF02518.21 gi|336253602|ref|YP_004596709.1| - 2.8e-30 104.2 0.0 6.8e-30 103.0 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_3 PF13492.1 gi|336253602|ref|YP_004596709.1| - 1.3e-18 67.3 0.0 7e-07 29.3 0.0 3.8 3 0 0 3 3 3 3 GAF domain HisKA PF00512.20 gi|336253602|ref|YP_004596709.1| - 1.3e-09 37.8 6.1 1.9e-09 37.3 0.1 3.4 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain GAF_2 PF13185.1 gi|336253602|ref|YP_004596709.1| - 4.9e-09 36.8 1.7 0.0085 16.5 0.0 4.3 4 0 0 4 4 4 2 GAF domain HATPase_c_5 PF14501.1 gi|336253602|ref|YP_004596709.1| - 6.8e-06 25.7 0.0 1.6e-05 24.5 0.0 1.6 1 0 0 1 1 1 1 GHKL domain KaiC PF06745.8 gi|336253602|ref|YP_004596709.1| - 0.00087 18.4 0.0 0.0018 17.4 0.0 1.5 1 0 0 1 1 1 1 KaiC HATPase_c_2 PF13581.1 gi|336253602|ref|YP_004596709.1| - 0.059 13.1 0.1 0.14 11.9 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.1 gi|336253602|ref|YP_004596709.1| - 0.1 12.2 0.0 0.22 11.1 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Carb_kinase PF01256.12 gi|336253603|ref|YP_004596710.1| - 1.7e-34 119.2 1.8 2.1e-34 118.8 1.2 1.1 1 0 0 1 1 1 1 Carbohydrate kinase HK PF02110.10 gi|336253603|ref|YP_004596710.1| - 1.1e-05 24.7 1.0 0.0014 17.8 0.1 2.2 2 0 0 2 2 2 2 Hydroxyethylthiazole kinase family Pribosyltran PF00156.22 gi|336253604|ref|YP_004596711.1| - 2.1e-26 92.0 0.4 3.3e-26 91.4 0.3 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|336253604|ref|YP_004596711.1| - 0.0053 15.9 0.0 0.0073 15.5 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|336253604|ref|YP_004596711.1| - 0.018 14.3 0.1 0.17 11.1 0.0 2.0 2 0 0 2 2 2 0 Phosphoribosyl transferase DUF805 PF05656.9 gi|336253605|ref|YP_004596712.1| - 0.017 14.9 1.4 0.019 14.7 1.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF805) UPF0104 PF03706.8 gi|336253605|ref|YP_004596712.1| - 0.027 13.7 1.4 0.028 13.6 0.9 1.0 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0104) Transmemb_17 PF09799.4 gi|336253605|ref|YP_004596712.1| - 0.29 11.4 2.3 0.17 12.2 0.6 1.4 2 0 0 2 2 2 0 Predicted membrane protein HHH_5 PF14520.1 gi|336253606|ref|YP_004596713.1| - 2.3e-11 43.6 0.0 1e-10 41.5 0.0 2.0 2 0 0 2 2 2 1 Helix-hairpin-helix domain ERCC4 PF02732.10 gi|336253606|ref|YP_004596713.1| - 2.4e-11 43.5 0.0 3.2e-11 43.1 0.0 1.2 1 0 0 1 1 1 1 ERCC4 domain HHH_2 PF12826.2 gi|336253606|ref|YP_004596713.1| - 5e-11 42.3 0.0 1.6e-10 40.7 0.0 1.7 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH PF00633.18 gi|336253606|ref|YP_004596713.1| - 2.2e-06 27.0 0.2 7.9e-05 22.1 0.1 2.5 2 0 0 2 2 2 1 Helix-hairpin-helix motif HhH-GPD PF00730.20 gi|336253606|ref|YP_004596713.1| - 0.13 12.5 0.0 0.31 11.3 0.0 1.6 1 0 0 1 1 1 0 HhH-GPD superfamily base excision DNA repair protein APH PF01636.18 gi|336253607|ref|YP_004596714.1| - 3.4e-37 128.4 5.4 5.7e-37 127.7 3.7 1.3 1 0 0 1 1 1 1 Phosphotransferase enzyme family DUF1679 PF07914.6 gi|336253607|ref|YP_004596714.1| - 0.00038 19.2 0.0 0.00051 18.8 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1679) EcKinase PF02958.15 gi|336253607|ref|YP_004596714.1| - 0.0014 17.8 0.0 0.0021 17.2 0.0 1.2 1 0 0 1 1 1 1 Ecdysteroid kinase Virul_fac_BrkB PF03631.10 gi|336253608|ref|YP_004596715.1| - 6.2e-32 110.9 29.5 7.7e-32 110.6 20.4 1.0 1 0 0 1 1 1 1 Virulence factor BrkB DUF1077 PF06417.7 gi|336253608|ref|YP_004596715.1| - 0.013 14.8 0.1 0.026 13.8 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1077) ABC2_membrane_5 PF13346.1 gi|336253608|ref|YP_004596715.1| - 0.021 14.1 6.0 0.038 13.2 4.2 1.4 1 0 0 1 1 1 0 ABC-2 family transporter protein UPF0182 PF03699.8 gi|336253608|ref|YP_004596715.1| - 2.2 6.1 4.5 2.9 5.6 3.1 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0182) DUF2196 PF09962.4 gi|336253609|ref|YP_004596716.1| - 1e-05 25.2 0.4 1.1e-05 25.0 0.3 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2196) SNN_linker PF09050.5 gi|336253609|ref|YP_004596716.1| - 0.02 14.4 0.4 0.042 13.3 0.3 1.5 1 0 0 1 1 1 0 Stannin unstructured linker Lactamase_B_2 PF12706.2 gi|336253610|ref|YP_004596717.1| - 1.9e-18 66.7 0.0 2.3e-18 66.4 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|336253610|ref|YP_004596717.1| - 3.3e-14 52.9 0.2 4.3e-14 52.5 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|336253610|ref|YP_004596717.1| - 5.9e-06 26.0 5.9 1.1e-05 25.2 4.1 1.6 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily uDENN PF03456.13 gi|336253610|ref|YP_004596717.1| - 0.13 12.2 0.1 0.29 11.1 0.0 1.5 1 0 0 1 1 1 0 uDENN domain SelR PF01641.13 gi|336253611|ref|YP_004596718.1| - 5.2e-52 174.7 0.2 6.1e-52 174.5 0.1 1.0 1 0 0 1 1 1 1 SelR domain DZR PF12773.2 gi|336253611|ref|YP_004596718.1| - 0.0056 16.4 1.6 0.048 13.4 1.2 2.2 1 1 1 2 2 2 2 Double zinc ribbon Yippee-Mis18 PF03226.9 gi|336253611|ref|YP_004596718.1| - 0.018 15.0 0.2 0.04 13.9 0.2 1.5 1 1 0 1 1 1 0 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly GFA PF04828.9 gi|336253611|ref|YP_004596718.1| - 0.022 14.6 1.1 5.5 6.9 0.1 2.2 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme DUF2072 PF09845.4 gi|336253611|ref|YP_004596718.1| - 0.024 14.5 1.2 0.039 13.8 0.2 1.7 1 1 1 2 2 2 0 Zn-ribbon containing protein (DUF2072) DUF2296 PF10058.4 gi|336253611|ref|YP_004596718.1| - 0.039 13.6 0.3 1.4 8.6 0.0 2.3 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) DUF2082 PF09855.4 gi|336253611|ref|YP_004596718.1| - 0.052 13.4 0.4 0.24 11.2 0.1 1.9 2 0 0 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Zn-ribbon_8 PF09723.5 gi|336253611|ref|YP_004596718.1| - 0.072 13.0 0.8 12 5.9 0.0 2.4 2 0 0 2 2 2 0 Zinc ribbon domain DUF2318 PF10080.4 gi|336253611|ref|YP_004596718.1| - 0.14 11.9 0.4 1.5 8.6 0.0 2.0 1 1 1 2 2 2 0 Predicted membrane protein (DUF2318) zinc_ribbon_2 PF13240.1 gi|336253611|ref|YP_004596718.1| - 0.25 10.8 1.9 4.2 6.9 0.2 2.5 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|336253611|ref|YP_004596718.1| - 0.7 9.2 9.5 3.2 7.1 0.8 3.3 3 1 0 3 3 3 0 TFIIB zinc-binding Ribosomal_L37e PF01907.14 gi|336253611|ref|YP_004596718.1| - 0.89 9.3 3.4 2.3 8.0 0.1 2.2 2 0 0 2 2 2 0 Ribosomal protein L37e zf-Mss51 PF13824.1 gi|336253611|ref|YP_004596718.1| - 1.1 9.1 3.7 3.2 7.6 0.1 2.9 1 1 2 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-ribbon_3 PF13248.1 gi|336253611|ref|YP_004596718.1| - 1.1 8.5 6.1 3.5 6.9 0.1 2.7 3 1 1 4 4 3 0 zinc-ribbon domain RRN7 PF11781.3 gi|336253611|ref|YP_004596718.1| - 1.9 8.0 7.4 4.4 6.9 0.1 2.9 2 1 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 zinc_ribbon_5 PF13719.1 gi|336253612|ref|YP_004596719.1| - 0.0015 18.0 1.6 0.031 13.8 0.1 2.1 2 0 0 2 2 2 1 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|336253612|ref|YP_004596719.1| - 0.0017 18.0 1.5 0.039 13.6 0.1 2.1 2 0 0 2 2 2 1 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|336253612|ref|YP_004596719.1| - 0.003 16.8 2.2 0.095 12.0 0.1 2.1 2 0 0 2 2 2 1 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|336253612|ref|YP_004596719.1| - 0.0043 16.2 1.9 1.4 8.2 0.1 2.1 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|336253612|ref|YP_004596719.1| - 0.0067 16.2 0.8 0.011 15.5 0.6 1.4 1 1 0 1 1 1 1 Double zinc ribbon RNA_POL_M_15KD PF02150.11 gi|336253612|ref|YP_004596719.1| - 0.012 15.3 0.2 0.63 9.7 0.0 2.1 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit HypA PF01155.14 gi|336253612|ref|YP_004596719.1| - 0.012 15.2 0.2 0.013 15.2 0.1 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Zn-ribbon_8 PF09723.5 gi|336253612|ref|YP_004596719.1| - 0.019 14.9 1.1 0.73 9.8 0.1 2.1 2 0 0 2 2 2 0 Zinc ribbon domain UPF0547 PF10571.4 gi|336253612|ref|YP_004596719.1| - 0.027 14.1 3.6 2.3 8.0 0.0 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 PADR1 PF08063.7 gi|336253612|ref|YP_004596719.1| - 0.028 13.8 0.6 0.59 9.5 0.0 2.0 2 0 0 2 2 2 0 PADR1 (NUC008) domain TFIIS_C PF01096.13 gi|336253612|ref|YP_004596719.1| - 0.042 13.4 1.5 2.3 7.8 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zinc_ribbon_2 PF13240.1 gi|336253612|ref|YP_004596719.1| - 0.051 13.0 1.6 2.7 7.5 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1 PF03811.8 gi|336253612|ref|YP_004596719.1| - 0.066 12.7 0.2 0.066 12.7 0.2 2.1 2 0 0 2 2 2 0 InsA N-terminal domain OrfB_Zn_ribbon PF07282.6 gi|336253612|ref|YP_004596719.1| - 0.078 12.6 0.3 7.3 6.3 0.0 2.0 2 0 0 2 2 2 0 Putative transposase DNA-binding domain PhnA_Zn_Ribbon PF08274.7 gi|336253612|ref|YP_004596719.1| - 0.081 12.7 0.9 2.8 7.7 0.1 2.1 2 0 0 2 2 2 0 PhnA Zinc-Ribbon DUF35_N PF12172.3 gi|336253612|ref|YP_004596719.1| - 0.1 12.5 2.2 4 7.4 0.2 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-ISL3 PF14690.1 gi|336253612|ref|YP_004596719.1| - 0.12 12.4 3.7 11 6.1 0.1 2.9 2 1 1 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF2387 PF09526.5 gi|336253612|ref|YP_004596719.1| - 0.13 12.1 0.4 2.5 8.0 0.2 2.0 2 0 0 2 2 2 0 Probable metal-binding protein (DUF2387) DNA_RNApol_7kD PF03604.8 gi|336253612|ref|YP_004596719.1| - 0.15 11.5 1.3 0.75 9.3 0.1 2.1 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Prim_Zn_Ribbon PF08273.7 gi|336253612|ref|YP_004596719.1| - 0.19 11.8 1.4 4 7.6 0.0 2.1 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase Sgf11 PF08209.6 gi|336253612|ref|YP_004596719.1| - 0.38 10.0 2.4 11 5.4 0.2 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) A2L_zn_ribbon PF08792.5 gi|336253612|ref|YP_004596719.1| - 0.39 10.2 1.8 11 5.5 0.2 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-C2HC_2 PF13913.1 gi|336253612|ref|YP_004596719.1| - 0.66 9.7 3.5 5.6 6.7 0.4 2.2 2 0 0 2 2 2 0 zinc-finger of a C2HC-type Saccharop_dh_N PF04455.7 gi|336253613|ref|YP_004596720.1| - 5e-34 116.5 0.0 1.1e-33 115.4 0.0 1.6 1 0 0 1 1 1 1 LOR/SDH bifunctional enzyme conserved region TPP_enzyme_M PF00205.17 gi|336253613|ref|YP_004596720.1| - 0.00053 19.7 0.1 0.0023 17.6 0.0 2.0 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain DS PF01916.12 gi|336253613|ref|YP_004596720.1| - 0.15 11.2 0.0 0.33 10.0 0.0 1.6 1 1 0 1 1 1 0 Deoxyhypusine synthase HTH_10 PF04967.7 gi|336253614|ref|YP_004596721.1| - 7.9e-20 70.1 0.0 1.7e-19 69.1 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain GAF_2 PF13185.1 gi|336253614|ref|YP_004596721.1| - 7.2e-15 55.7 0.8 7.2e-15 55.7 0.6 2.9 3 1 0 3 3 3 1 GAF domain GAF_3 PF13492.1 gi|336253614|ref|YP_004596721.1| - 6.9e-10 39.1 0.6 2.8e-09 37.1 0.0 2.4 3 0 0 3 3 3 1 GAF domain PAS_4 PF08448.5 gi|336253614|ref|YP_004596721.1| - 8.5e-08 32.2 0.7 8.5e-08 32.2 0.5 3.4 1 1 2 3 3 3 1 PAS fold GAF PF01590.21 gi|336253614|ref|YP_004596721.1| - 3.8e-07 30.3 2.4 5.6e-07 29.8 0.1 2.4 2 0 0 2 2 2 1 GAF domain Sigma70_r4 PF04545.11 gi|336253614|ref|YP_004596721.1| - 3.8e-05 22.9 0.0 0.00019 20.6 0.0 2.3 1 0 0 1 1 1 1 Sigma-70, region 4 PAS_9 PF13426.1 gi|336253614|ref|YP_004596721.1| - 0.00033 21.0 0.0 0.0011 19.3 0.0 1.9 1 0 0 1 1 1 1 PAS domain HTH_11 PF08279.7 gi|336253614|ref|YP_004596721.1| - 0.00037 20.0 0.0 0.00098 18.7 0.0 1.7 1 0 0 1 1 1 1 HTH domain PAS PF00989.19 gi|336253614|ref|YP_004596721.1| - 0.0035 17.1 0.2 0.014 15.1 0.0 2.2 2 0 0 2 2 2 1 PAS fold UPF0122 PF04297.9 gi|336253614|ref|YP_004596721.1| - 0.0074 16.2 0.0 0.02 14.8 0.0 1.7 1 0 0 1 1 1 1 Putative helix-turn-helix protein, YlxM / p13 like DUF134 PF02001.11 gi|336253614|ref|YP_004596721.1| - 0.014 15.2 0.0 0.035 13.9 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function DUF134 GerE PF00196.14 gi|336253614|ref|YP_004596721.1| - 0.026 13.8 0.0 0.33 10.2 0.0 2.5 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.7 gi|336253614|ref|YP_004596721.1| - 0.038 13.4 0.1 0.2 11.1 0.1 2.4 1 1 0 1 1 1 0 Sigma-70, region 4 Filo_glycop PF01611.11 gi|336253614|ref|YP_004596721.1| - 0.23 10.2 0.0 0.36 9.5 0.0 1.2 1 0 0 1 1 1 0 Filovirus glycoprotein SQS_PSY PF00494.14 gi|336253615|ref|YP_004596722.1| - 7.3e-67 225.4 9.7 9.2e-67 225.1 6.7 1.0 1 0 0 1 1 1 1 Squalene/phytoene synthase DUF422 PF04240.7 gi|336253617|ref|YP_004596724.1| - 1.4e-67 227.2 13.7 1.8e-67 226.8 9.5 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF422) DUF2512 PF10710.4 gi|336253617|ref|YP_004596724.1| - 0.21 11.0 1.0 0.6 9.5 0.7 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2512) UbiA PF01040.13 gi|336253618|ref|YP_004596725.1| - 2.5e-29 102.2 20.6 3.5e-29 101.8 14.3 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF4231 PF14015.1 gi|336253618|ref|YP_004596725.1| - 0.18 11.8 7.0 2.7 8.0 0.0 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF4231) DAO PF01266.19 gi|336253619|ref|YP_004596726.1| - 8.7e-19 67.6 0.0 2.6e-08 33.1 0.0 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase Amino_oxidase PF01593.19 gi|336253619|ref|YP_004596726.1| - 1.4e-18 67.2 0.3 1.3e-11 44.3 0.1 2.1 2 0 0 2 2 2 2 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.1 gi|336253619|ref|YP_004596726.1| - 2e-16 59.7 0.1 5e-16 58.4 0.0 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.22 gi|336253619|ref|YP_004596726.1| - 1.6e-07 31.5 1.1 1.7e-05 25.0 0.4 3.3 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|336253619|ref|YP_004596726.1| - 7.3e-07 28.3 1.2 1.5e-06 27.3 0.8 1.5 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_3 PF13738.1 gi|336253619|ref|YP_004596726.1| - 1.2e-05 25.5 0.0 0.00012 22.1 0.1 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|336253619|ref|YP_004596726.1| - 1.4e-05 25.0 0.2 3e-05 23.9 0.1 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|336253619|ref|YP_004596726.1| - 2.1e-05 23.8 0.0 5.7e-05 22.3 0.0 1.7 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|336253619|ref|YP_004596726.1| - 3.6e-05 22.9 0.3 6e-05 22.2 0.2 1.2 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.9 gi|336253619|ref|YP_004596726.1| - 9.7e-05 21.0 0.1 0.00038 19.0 0.7 1.5 2 0 0 2 2 2 1 HI0933-like protein Thi4 PF01946.12 gi|336253619|ref|YP_004596726.1| - 0.00013 21.1 0.5 0.0002 20.5 0.3 1.3 1 0 0 1 1 1 1 Thi4 family Strep_67kDa_ant PF06100.6 gi|336253619|ref|YP_004596726.1| - 0.0034 15.8 0.0 0.0045 15.4 0.0 1.1 1 0 0 1 1 1 1 Streptococcal 67 kDa myosin-cross-reactive antigen like family GIDA PF01134.17 gi|336253619|ref|YP_004596726.1| - 0.014 14.3 1.7 0.021 13.7 1.2 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A 3HCDH_N PF02737.13 gi|336253619|ref|YP_004596726.1| - 0.014 15.0 0.4 0.024 14.2 0.2 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|336253619|ref|YP_004596726.1| - 0.021 14.5 0.2 0.033 13.9 0.1 1.3 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus IlvN PF07991.7 gi|336253619|ref|YP_004596726.1| - 0.026 13.9 0.1 0.043 13.1 0.1 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain NAD_binding_7 PF13241.1 gi|336253619|ref|YP_004596726.1| - 0.053 13.7 0.0 0.09 13.0 0.0 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding ApbA PF02558.11 gi|336253619|ref|YP_004596726.1| - 0.063 12.7 0.1 0.1 12.0 0.1 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA AlaDh_PNT_C PF01262.16 gi|336253619|ref|YP_004596726.1| - 0.085 12.4 0.2 0.17 11.4 0.1 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Form_Nir_trans PF01226.12 gi|336253620|ref|YP_004596727.1| - 4.3e-56 189.5 13.2 5.4e-56 189.2 9.1 1.1 1 0 0 1 1 1 1 Formate/nitrite transporter Usp PF00582.21 gi|336253620|ref|YP_004596727.1| - 3e-16 59.8 14.8 1.9e-09 37.8 0.2 3.2 3 0 0 3 3 3 2 Universal stress protein family eIF-1a PF01176.14 gi|336253622|ref|YP_004596729.1| - 3.6e-22 77.5 0.1 4.1e-22 77.3 0.0 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 CxxCxxCC PF03692.10 gi|336253623|ref|YP_004596730.1| - 2.3e-05 24.7 2.6 4.1e-05 23.9 1.8 1.5 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain DUF834 PF05754.9 gi|336253623|ref|YP_004596730.1| - 0.1 12.4 0.2 0.18 11.6 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF834) FAA_hydrolase PF01557.13 gi|336253624|ref|YP_004596731.1| - 1.3e-52 178.3 0.0 1.6e-52 178.0 0.0 1.0 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family TRM13 PF05206.9 gi|336253626|ref|YP_004596733.1| - 0.0088 15.3 0.0 0.0091 15.2 0.0 1.0 1 0 0 1 1 1 1 Methyltransferase TRM13 HTH_39 PF14090.1 gi|336253626|ref|YP_004596733.1| - 0.022 14.1 0.3 0.028 13.8 0.2 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain DUF883 PF05957.8 gi|336253627|ref|YP_004596734.1| - 0.085 13.2 1.2 0.15 12.4 0.9 1.5 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF883) Flg_hook PF02120.11 gi|336253627|ref|YP_004596734.1| - 0.1 12.2 0.0 0.21 11.2 0.0 1.6 1 1 0 1 1 1 0 Flagellar hook-length control protein FliK CbiZ PF01955.13 gi|336253628|ref|YP_004596735.1| - 3.5e-37 128.0 4.4 2.3e-36 125.3 3.0 1.9 1 1 0 1 1 1 1 Adenosylcobinamide amidohydrolase TetR_N PF00440.18 gi|336253628|ref|YP_004596735.1| - 0.074 12.6 0.1 0.2 11.3 0.1 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family Aminotran_1_2 PF00155.16 gi|336253629|ref|YP_004596736.1| - 5.4e-41 140.7 0.0 6.6e-41 140.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.15 gi|336253629|ref|YP_004596736.1| - 0.00021 19.7 0.0 0.0003 19.1 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Beta_elim_lyase PF01212.16 gi|336253629|ref|YP_004596736.1| - 0.0037 16.4 0.0 0.011 14.8 0.0 1.7 2 0 0 2 2 2 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|336253629|ref|YP_004596736.1| - 0.028 13.4 0.0 0.055 12.5 0.0 1.5 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family DBI_PRT PF02277.12 gi|336253630|ref|YP_004596737.1| - 1.7e-16 60.2 4.1 2.7e-16 59.5 2.4 1.4 1 1 0 1 1 1 1 Phosphoribosyltransferase NTP_transf_3 PF12804.2 gi|336253631|ref|YP_004596738.1| - 4.4e-19 69.1 1.2 8.5e-19 68.1 0.8 1.4 1 1 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|336253631|ref|YP_004596738.1| - 1.4e-05 24.7 0.0 2.2e-05 24.0 0.0 1.5 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NTP_transferase PF00483.18 gi|336253631|ref|YP_004596738.1| - 0.00013 21.4 0.0 0.00015 21.1 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase CTP_transf_3 PF02348.14 gi|336253631|ref|YP_004596738.1| - 0.0057 16.3 0.0 0.083 12.5 0.0 2.0 2 0 0 2 2 2 1 Cytidylyltransferase CobS PF02654.10 gi|336253632|ref|YP_004596739.1| - 1.7e-41 142.3 8.2 2e-41 142.1 5.7 1.0 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase CobD_Cbib PF03186.8 gi|336253633|ref|YP_004596740.1| - 1.3e-73 247.6 12.0 1.3e-73 247.6 8.3 1.3 1 1 0 1 1 1 1 CobD/Cbib protein YbjM PF11045.3 gi|336253633|ref|YP_004596740.1| - 0.023 14.4 0.5 0.044 13.5 0.3 1.5 1 0 0 1 1 1 0 Putative inner membrane protein of Enterobacteriaceae DUF3481 PF11980.3 gi|336253633|ref|YP_004596740.1| - 3.1 7.7 9.0 1.2 9.0 0.3 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF3481) HAD_2 PF13419.1 gi|336253634|ref|YP_004596741.1| - 7e-17 62.2 0.0 9.2e-17 61.8 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|336253634|ref|YP_004596741.1| - 5.7e-09 36.7 0.3 1.8e-08 35.0 0.2 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|336253634|ref|YP_004596741.1| - 1.3e-05 24.7 0.1 2.5e-05 23.8 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like eIF-5_eIF-2B PF01873.12 gi|336253635|ref|YP_004596742.1| - 2.7e-30 104.5 0.0 4.1e-30 104.0 0.0 1.2 1 0 0 1 1 1 1 Domain found in IF2B/IF5 TRAM PF01938.15 gi|336253635|ref|YP_004596742.1| - 2.5e-09 36.7 1.2 5.1e-09 35.7 0.8 1.5 1 0 0 1 1 1 1 TRAM domain CBM_4_9 PF02018.12 gi|336253635|ref|YP_004596742.1| - 0.049 13.6 0.1 0.091 12.7 0.1 1.5 1 0 0 1 1 1 0 Carbohydrate binding domain Zn-ribbon_8 PF09723.5 gi|336253635|ref|YP_004596742.1| - 0.14 12.1 0.5 0.27 11.2 0.3 1.5 1 0 0 1 1 1 0 Zinc ribbon domain DUF2387 PF09526.5 gi|336253635|ref|YP_004596742.1| - 0.19 11.6 2.2 0.37 10.7 1.2 1.7 1 1 1 2 2 2 0 Probable metal-binding protein (DUF2387) Lar_restr_allev PF14354.1 gi|336253635|ref|YP_004596742.1| - 0.47 10.7 2.7 17 5.8 0.1 2.3 1 1 1 2 2 2 0 Restriction alleviation protein Lar Bac_luciferase PF00296.15 gi|336253637|ref|YP_004596744.1| - 3.9e-56 190.4 0.1 4.4e-56 190.2 0.1 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase zf-ribbon_3 PF13248.1 gi|336253638|ref|YP_004596745.1| - 2.2e-10 39.3 10.7 4.6e-06 25.6 2.2 2.4 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|336253638|ref|YP_004596745.1| - 6.6e-09 35.4 9.7 1.3e-07 31.3 6.9 2.3 1 1 1 2 2 2 2 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|336253638|ref|YP_004596745.1| - 8e-09 34.7 8.3 0.0004 19.7 3.7 2.6 2 0 0 2 2 2 2 zinc-ribbon domain RHH_1 PF01402.16 gi|336253638|ref|YP_004596745.1| - 0.00081 19.1 7.0 0.00093 18.9 1.9 3.0 2 1 0 2 2 2 1 Ribbon-helix-helix protein, copG family zf-NADH-PPase PF09297.6 gi|336253638|ref|YP_004596745.1| - 0.0021 17.5 13.1 0.24 10.9 0.1 4.2 4 0 0 4 4 4 2 NADH pyrophosphatase zinc ribbon domain Cys_rich_KTR PF14205.1 gi|336253638|ref|YP_004596745.1| - 0.0053 16.1 1.5 2.6 7.5 0.2 2.3 2 0 0 2 2 2 2 Cysteine-rich KTR PolC_DP2 PF03833.8 gi|336253638|ref|YP_004596745.1| - 0.04 11.6 3.7 0.072 10.7 2.6 1.4 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 Nudix_N_2 PF14803.1 gi|336253638|ref|YP_004596745.1| - 0.053 13.2 13.2 0.45 10.2 1.1 4.0 4 1 0 4 4 4 0 Nudix N-terminal DNA_ligase_ZBD PF03119.11 gi|336253638|ref|YP_004596745.1| - 0.055 13.1 2.4 4.2 7.1 0.1 3.0 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zinc-ribbons_6 PF07191.7 gi|336253638|ref|YP_004596745.1| - 0.062 13.1 8.0 0.051 13.3 2.6 2.3 1 1 1 2 2 2 0 zinc-ribbons DUF2191 PF09957.4 gi|336253638|ref|YP_004596745.1| - 0.19 11.5 6.3 0.079 12.7 1.8 2.3 2 1 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2191) UPF0547 PF10571.4 gi|336253638|ref|YP_004596745.1| - 0.38 10.4 9.6 0.25 11.0 2.8 2.6 1 1 1 2 2 2 0 Uncharacterised protein family UPF0547 Lsr2 PF11774.3 gi|336253638|ref|YP_004596745.1| - 0.45 10.4 6.3 0.38 10.6 0.2 2.4 2 0 0 2 2 2 0 Lsr2 zf-C3HC4_3 PF13920.1 gi|336253638|ref|YP_004596745.1| - 0.45 10.2 5.6 1.1 8.9 0.4 2.3 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) Zn-ribbon_8 PF09723.5 gi|336253638|ref|YP_004596745.1| - 0.56 10.2 10.1 9.5 6.2 2.5 3.4 2 1 1 3 3 3 0 Zinc ribbon domain zf-C2HC_2 PF13913.1 gi|336253638|ref|YP_004596745.1| - 1.1 9.0 5.6 11 5.8 0.2 2.5 2 0 0 2 2 2 0 zinc-finger of a C2HC-type OrfB_Zn_ribbon PF07282.6 gi|336253638|ref|YP_004596745.1| - 2.3 7.9 10.5 1.4 8.6 3.0 2.8 1 1 1 2 2 2 0 Putative transposase DNA-binding domain PSK_trans_fac PF07704.6 gi|336253638|ref|YP_004596745.1| - 2.7 8.7 12.7 0.49 11.0 4.5 2.6 1 1 1 2 2 2 0 Rv0623-like transcription factor NOB1_Zn_bind PF08772.6 gi|336253638|ref|YP_004596745.1| - 2.9 7.7 12.8 14 5.5 1.5 2.8 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like Sgf11 PF08209.6 gi|336253638|ref|YP_004596745.1| - 3.2 7.1 6.5 6.2 6.2 0.2 2.7 2 1 1 3 3 3 0 Sgf11 (transcriptional regulation protein) TerY-C PF15616.1 gi|336253638|ref|YP_004596745.1| - 3.5 7.5 8.9 11 5.9 6.2 1.8 1 1 0 1 1 1 0 TerY-C metal binding domain GFA PF04828.9 gi|336253638|ref|YP_004596745.1| - 6.5 6.7 11.5 54 3.8 0.3 3.4 1 1 0 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme DUF2321 PF10083.4 gi|336253638|ref|YP_004596745.1| - 9.2 5.7 6.3 3.9 6.9 0.9 2.1 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2321) RHH_1 PF01402.16 gi|336253639|ref|YP_004596746.1| - 1.4e-07 31.0 0.1 2e-07 30.5 0.1 1.3 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family CHASE3 PF05227.8 gi|336253639|ref|YP_004596746.1| - 0.033 13.8 1.1 0.034 13.8 0.7 1.1 1 0 0 1 1 1 0 CHASE3 domain FtsZ_C PF12327.3 gi|336253640|ref|YP_004596747.1| - 4.9e-35 119.4 0.6 4.9e-35 119.4 0.4 2.9 2 1 1 3 3 3 1 FtsZ family, C-terminal domain Tubulin PF00091.20 gi|336253640|ref|YP_004596747.1| - 8.8e-34 117.2 2.6 5.2e-33 114.6 1.8 2.2 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain ThiF PF00899.16 gi|336253640|ref|YP_004596747.1| - 0.018 14.8 0.0 0.066 13.0 0.0 2.0 1 0 0 1 1 1 0 ThiF family DZR PF12773.2 gi|336253641|ref|YP_004596748.1| - 6.4e-10 38.7 7.3 5.6e-08 32.4 4.4 2.3 1 1 1 2 2 2 2 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|336253641|ref|YP_004596748.1| - 1.1e-07 31.0 12.5 0.0097 15.3 1.8 3.3 3 0 0 3 3 3 3 zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|336253641|ref|YP_004596748.1| - 1.4e-06 27.6 7.1 0.058 12.9 0.1 3.9 3 1 0 3 3 3 2 NADH pyrophosphatase zinc ribbon domain zf-ribbon_3 PF13248.1 gi|336253641|ref|YP_004596748.1| - 2.9e-06 26.3 19.0 0.0013 17.8 5.7 2.8 2 1 0 2 2 2 2 zinc-ribbon domain Nudix_N_2 PF14803.1 gi|336253641|ref|YP_004596748.1| - 5.7e-06 25.9 13.2 0.05 13.3 0.0 4.3 3 1 0 3 3 3 2 Nudix N-terminal zf-MYND PF01753.13 gi|336253641|ref|YP_004596748.1| - 0.0027 17.5 0.0 1.8 8.5 0.0 2.7 2 1 0 2 2 2 1 MYND finger DUF35_N PF12172.3 gi|336253641|ref|YP_004596748.1| - 0.0034 17.2 10.5 2.1 8.3 0.1 3.4 3 0 0 3 3 3 2 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-IS66 PF13005.2 gi|336253641|ref|YP_004596748.1| - 0.026 14.5 7.9 14 5.7 0.0 4.3 4 0 0 4 4 4 0 zinc-finger binding domain of transposase IS66 zinc-ribbons_6 PF07191.7 gi|336253641|ref|YP_004596748.1| - 0.037 13.8 3.7 0.61 9.9 0.0 2.6 2 1 0 2 2 2 0 zinc-ribbons Lar_restr_allev PF14354.1 gi|336253641|ref|YP_004596748.1| - 0.073 13.3 12.3 18 5.7 0.4 2.8 1 1 1 2 2 2 0 Restriction alleviation protein Lar RecR PF02132.10 gi|336253641|ref|YP_004596748.1| - 0.15 11.4 10.4 4.3 6.8 0.0 3.3 3 0 0 3 3 3 0 RecR protein Rpr2 PF04032.11 gi|336253641|ref|YP_004596748.1| - 0.35 10.7 7.2 3.4 7.6 1.0 3.0 1 1 1 2 2 2 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain DUF2116 PF09889.4 gi|336253641|ref|YP_004596748.1| - 0.37 10.6 4.7 21 4.9 0.0 3.2 3 0 0 3 3 3 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) zf-tcix PF14952.1 gi|336253641|ref|YP_004596748.1| - 0.38 10.1 11.3 5.7 6.3 0.1 3.2 3 0 0 3 3 3 0 Putative treble-clef, zinc-finger, Zn-binding zf-RanBP PF00641.13 gi|336253641|ref|YP_004596748.1| - 0.43 9.7 13.4 0.17 10.9 2.0 3.3 3 0 0 3 3 3 0 Zn-finger in Ran binding protein and others Ribosomal_L32p PF01783.18 gi|336253641|ref|YP_004596748.1| - 0.67 10.1 5.7 7.2 6.8 0.2 2.9 3 0 0 3 3 3 0 Ribosomal L32p protein family GFA PF04828.9 gi|336253641|ref|YP_004596748.1| - 0.85 9.6 12.2 2.3 8.2 0.1 3.6 1 1 2 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme Zn-ribbon_8 PF09723.5 gi|336253641|ref|YP_004596748.1| - 0.93 9.4 13.8 10 6.1 0.2 4.2 3 1 1 4 4 4 0 Zinc ribbon domain zf-dskA_traR PF01258.12 gi|336253641|ref|YP_004596748.1| - 1.5 8.6 11.0 20 5.0 0.1 4.1 4 0 0 4 4 4 0 Prokaryotic dksA/traR C4-type zinc finger OrfB_Zn_ribbon PF07282.6 gi|336253641|ref|YP_004596748.1| - 1.5 8.5 12.0 4.5 7.0 2.0 3.1 1 1 0 2 2 2 0 Putative transposase DNA-binding domain FdhE PF04216.7 gi|336253641|ref|YP_004596748.1| - 2.6 7.7 9.7 2.3 7.8 1.3 2.2 1 1 1 2 2 2 0 Protein involved in formate dehydrogenase formation DNA_RNApol_7kD PF03604.8 gi|336253641|ref|YP_004596748.1| - 3.2 7.2 10.4 7.3 6.1 2.3 3.3 3 1 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit NMD3 PF04981.8 gi|336253641|ref|YP_004596748.1| - 3.2 6.7 8.8 5 6.1 0.1 3.0 1 1 1 3 3 3 0 NMD3 family Zn_ribbon_recom PF13408.1 gi|336253641|ref|YP_004596748.1| - 3.4 8.0 9.4 33 4.8 0.0 3.6 2 1 0 2 2 2 0 Recombinase zinc beta ribbon domain A2L_zn_ribbon PF08792.5 gi|336253641|ref|YP_004596748.1| - 3.6 7.1 9.1 34 4.0 0.1 3.9 4 0 0 4 4 4 0 A2L zinc ribbon domain RNA_POL_M_15KD PF02150.11 gi|336253641|ref|YP_004596748.1| - 7.7 6.2 14.3 14 5.4 0.2 4.2 3 1 1 4 4 4 0 RNA polymerases M/15 Kd subunit DUF164 PF02591.10 gi|336253641|ref|YP_004596748.1| - 9.4 6.1 8.3 30 4.5 0.2 3.8 4 0 0 4 4 4 0 Putative zinc ribbon domain DUF2863 PF11062.3 gi|336253641|ref|YP_004596748.1| - 9.6 4.1 9.6 8.3 4.3 0.2 2.9 2 1 1 3 3 3 0 Protein of unknown function (DUF2863) ATP_bind_3 PF01171.15 gi|336253642|ref|YP_004596749.1| - 1.3e-12 47.6 0.0 1.9e-12 47.0 0.0 1.3 1 0 0 1 1 1 1 PP-loop family PAPS_reduct PF01507.14 gi|336253642|ref|YP_004596749.1| - 2.9e-05 23.9 0.0 4.9e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family NAD_synthase PF02540.12 gi|336253642|ref|YP_004596749.1| - 0.00089 18.2 0.0 0.0014 17.5 0.0 1.3 1 0 0 1 1 1 1 NAD synthase RecR PF02132.10 gi|336253642|ref|YP_004596749.1| - 0.002 17.5 1.9 0.002 17.5 1.3 3.0 4 0 0 4 4 4 1 RecR protein DUF2392 PF10288.4 gi|336253642|ref|YP_004596749.1| - 0.0045 17.3 0.0 0.0071 16.6 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2392) tRNA_Me_trans PF03054.11 gi|336253642|ref|YP_004596749.1| - 0.039 12.5 0.0 0.058 11.9 0.0 1.3 1 0 0 1 1 1 0 tRNA methyl transferase Abhydrolase_5 PF12695.2 gi|336253644|ref|YP_004596751.1| - 4.5e-09 36.2 0.1 5.3e-09 35.9 0.1 1.4 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|336253644|ref|YP_004596751.1| - 4.3e-08 33.3 4.8 5.9e-08 32.8 3.3 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family HTH_20 PF12840.2 gi|336253646|ref|YP_004596753.1| - 0.00028 20.6 1.9 0.001 18.8 0.2 2.5 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_10 PF04967.7 gi|336253647|ref|YP_004596754.1| - 9.9e-15 53.8 0.0 1.6e-14 53.2 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.11 gi|336253647|ref|YP_004596754.1| - 0.12 11.6 0.0 0.22 10.8 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 ABC2_membrane_2 PF12679.2 gi|336253648|ref|YP_004596755.1| - 3.3e-18 65.5 12.6 4.4e-18 65.1 8.7 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|336253648|ref|YP_004596755.1| - 3.4e-11 42.7 6.0 6e-11 41.9 4.1 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|336253648|ref|YP_004596755.1| - 1.3e-06 27.7 7.7 1.3e-06 27.7 5.3 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|336253648|ref|YP_004596755.1| - 2.6e-05 23.6 4.3 2.6e-05 23.6 3.0 1.8 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|336253648|ref|YP_004596755.1| - 0.059 12.5 12.4 0.085 12.0 8.2 1.7 1 1 0 1 1 1 0 ABC-2 type transporter DUF2231 PF09990.4 gi|336253648|ref|YP_004596755.1| - 1.7 9.0 8.5 0.73 10.2 1.3 3.1 3 1 0 3 3 3 0 Predicted membrane protein (DUF2231) ABC_tran PF00005.22 gi|336253649|ref|YP_004596756.1| - 3e-22 79.4 0.0 4.1e-22 78.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|336253649|ref|YP_004596756.1| - 3.4e-14 53.5 0.1 7.6e-10 39.2 0.0 2.2 1 1 1 2 2 2 2 AAA domain DUF258 PF03193.11 gi|336253649|ref|YP_004596756.1| - 0.039 13.1 0.0 0.063 12.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_10 PF12846.2 gi|336253649|ref|YP_004596756.1| - 0.045 13.1 0.0 4.2 6.7 0.0 2.2 2 0 0 2 2 2 0 AAA-like domain AAA_23 PF13476.1 gi|336253649|ref|YP_004596756.1| - 0.2 11.9 0.2 0.35 11.1 0.1 1.3 1 0 0 1 1 1 0 AAA domain Methyltransf_11 PF08241.7 gi|336253650|ref|YP_004596757.1| - 3.9e-17 62.5 0.2 1.1e-16 61.0 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|336253650|ref|YP_004596757.1| - 2.2e-15 56.5 0.0 3e-15 56.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|336253650|ref|YP_004596757.1| - 2e-13 50.3 0.0 3.2e-13 49.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|336253650|ref|YP_004596757.1| - 1e-10 41.9 0.1 4.1e-10 40.0 0.0 2.0 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|336253650|ref|YP_004596757.1| - 4.5e-10 39.7 0.0 1e-09 38.6 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|336253650|ref|YP_004596757.1| - 5.3e-10 39.8 2.8 6.5e-10 39.5 0.3 2.2 1 1 1 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|336253650|ref|YP_004596757.1| - 1.2e-07 31.1 0.0 2.1e-07 30.2 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|336253650|ref|YP_004596757.1| - 2.7e-07 30.6 1.6 2.7e-07 30.6 1.1 2.2 1 1 1 2 2 2 1 Methyltransferase domain MetW PF07021.7 gi|336253650|ref|YP_004596757.1| - 9.4e-07 28.3 0.0 1.9e-06 27.4 0.0 1.4 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW MTS PF05175.9 gi|336253650|ref|YP_004596757.1| - 1.3e-05 24.6 0.1 3e-05 23.4 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase small domain PCMT PF01135.14 gi|336253650|ref|YP_004596757.1| - 4.4e-05 23.1 0.0 8.2e-05 22.2 0.0 1.4 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_32 PF13679.1 gi|336253650|ref|YP_004596757.1| - 0.0011 18.6 0.0 0.0023 17.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|336253650|ref|YP_004596757.1| - 0.0024 17.0 0.1 0.0034 16.5 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) FtsJ PF01728.14 gi|336253650|ref|YP_004596757.1| - 0.007 16.3 0.0 0.0096 15.9 0.0 1.3 1 0 0 1 1 1 1 FtsJ-like methyltransferase RrnaAD PF00398.15 gi|336253650|ref|YP_004596757.1| - 0.0075 15.3 0.0 0.029 13.4 0.0 1.7 1 1 0 2 2 2 1 Ribosomal RNA adenine dimethylase Methyltransf_29 PF03141.11 gi|336253650|ref|YP_004596757.1| - 0.012 14.0 0.1 0.015 13.6 0.1 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase CMAS PF02353.15 gi|336253650|ref|YP_004596757.1| - 0.025 13.6 0.0 0.04 12.9 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase AP_endonuc_2 PF01261.19 gi|336253651|ref|YP_004596758.1| - 2.2e-26 92.4 1.3 1.4e-25 89.8 0.3 2.1 2 0 0 2 2 2 2 Xylose isomerase-like TIM barrel BPL_LplA_LipB PF03099.14 gi|336253652|ref|YP_004596759.1| - 7.3e-14 51.8 0.0 4.2e-13 49.4 0.0 2.1 2 0 0 2 2 2 1 Biotin/lipoate A/B protein ligase family IncA PF04156.9 gi|336253653|ref|YP_004596760.1| - 0.86 9.1 4.5 0.99 8.9 3.1 1.0 1 0 0 1 1 1 0 IncA protein Epimerase PF01370.16 gi|336253654|ref|YP_004596761.1| - 7.7e-21 74.5 0.0 1.1e-11 44.5 0.0 2.4 1 1 1 2 2 2 2 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|336253654|ref|YP_004596761.1| - 6.1e-13 49.1 0.2 1.4e-12 47.9 0.1 1.7 2 0 0 2 2 2 1 NADH(P)-binding RmlD_sub_bind PF04321.12 gi|336253654|ref|YP_004596761.1| - 7.9e-12 44.6 0.4 9.8e-05 21.3 0.0 2.9 2 1 0 2 2 2 2 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|336253654|ref|YP_004596761.1| - 1.5e-05 23.8 0.0 0.00048 18.9 0.0 2.1 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NmrA PF05368.8 gi|336253654|ref|YP_004596761.1| - 0.00026 20.2 0.0 0.0013 18.0 0.0 2.1 3 0 0 3 3 3 1 NmrA-like family Glyco_trans_4_4 PF13579.1 gi|336253654|ref|YP_004596761.1| - 0.01 16.0 2.3 0.086 12.9 0.5 2.7 2 2 1 3 3 3 1 Glycosyl transferase 4-like domain CbiJ PF02571.9 gi|336253654|ref|YP_004596761.1| - 0.066 12.5 0.0 0.11 11.8 0.0 1.3 1 0 0 1 1 1 0 Precorrin-6x reductase CbiJ/CobK adh_short PF00106.20 gi|336253654|ref|YP_004596761.1| - 0.078 12.8 0.1 0.2 11.5 0.1 1.7 1 0 0 1 1 1 0 short chain dehydrogenase F420_oxidored PF03807.12 gi|336253654|ref|YP_004596761.1| - 0.13 12.7 0.1 0.4 11.1 0.0 1.9 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent AP_endonuc_2 PF01261.19 gi|336253655|ref|YP_004596762.1| - 4.4e-20 71.9 1.8 7.5e-20 71.1 1.2 1.5 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel HEAT_2 PF13646.1 gi|336253656|ref|YP_004596763.1| - 2.6e-16 59.6 18.3 3.1e-09 36.9 1.4 4.1 1 1 2 3 3 3 3 HEAT repeats HEAT_EZ PF13513.1 gi|336253656|ref|YP_004596763.1| - 3.3e-10 40.1 19.6 0.0047 17.3 0.2 6.3 3 1 4 7 7 7 6 HEAT-like repeat HEAT PF02985.17 gi|336253656|ref|YP_004596763.1| - 3.5e-09 35.9 5.7 0.62 10.2 0.0 5.7 5 0 0 5 5 5 2 HEAT repeat zinc_ribbon_2 PF13240.1 gi|336253656|ref|YP_004596763.1| - 1.3e-05 24.5 3.0 2.5e-05 23.5 2.1 1.5 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|336253656|ref|YP_004596763.1| - 0.00028 20.6 0.5 0.00057 19.6 0.4 1.5 1 0 0 1 1 1 1 Double zinc ribbon Cnd1 PF12717.2 gi|336253656|ref|YP_004596763.1| - 0.0024 17.7 0.0 0.57 9.9 0.0 2.5 2 1 0 2 2 2 1 non-SMC mitotic condensation complex subunit 1 Adaptin_N PF01602.15 gi|336253656|ref|YP_004596763.1| - 0.0034 15.7 0.0 0.035 12.4 0.0 2.0 1 1 1 2 2 2 1 Adaptin N terminal region CLASP_N PF12348.3 gi|336253656|ref|YP_004596763.1| - 0.0048 16.2 0.1 1.9 7.8 0.0 2.4 1 1 1 2 2 2 2 CLASP N terminal Prok-RING_1 PF14446.1 gi|336253656|ref|YP_004596763.1| - 0.014 15.0 0.7 0.028 14.1 0.5 1.5 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 DUF2435 PF10363.4 gi|336253656|ref|YP_004596763.1| - 0.071 13.0 0.0 0.21 11.5 0.0 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF2435) zf-ribbon_3 PF13248.1 gi|336253656|ref|YP_004596763.1| - 0.16 11.1 6.1 1.4 8.2 4.3 2.3 1 1 0 1 1 1 0 zinc-ribbon domain UPF0547 PF10571.4 gi|336253656|ref|YP_004596763.1| - 1.2 8.8 4.1 4.1 7.1 0.0 2.5 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-Mss51 PF13824.1 gi|336253656|ref|YP_004596763.1| - 3.5 7.5 4.9 10 6.0 3.4 1.9 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-RING_3 PF14369.1 gi|336253656|ref|YP_004596763.1| - 5.3 7.1 9.1 1.1e+03 -0.4 6.3 2.7 1 1 0 1 1 1 0 zinc-finger Zn-ribbon_8 PF09723.5 gi|336253656|ref|YP_004596763.1| - 6.1 6.8 7.2 18 5.3 0.5 2.5 1 1 1 2 2 2 0 Zinc ribbon domain Peripla_BP_2 PF01497.13 gi|336253658|ref|YP_004596765.1| - 1.4e-14 53.7 0.0 2.8e-14 52.8 0.0 1.4 1 1 0 1 1 1 1 Periplasmic binding protein TAT_signal PF10518.4 gi|336253658|ref|YP_004596765.1| - 0.0011 18.8 0.8 0.002 18.0 0.6 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence RIO1 PF01163.17 gi|336253659|ref|YP_004596766.1| - 1.7e-45 154.6 0.2 2.5e-45 154.1 0.1 1.1 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.6 gi|336253659|ref|YP_004596766.1| - 1.1e-27 95.8 0.1 2.1e-27 94.9 0.0 1.5 1 0 0 1 1 1 1 Rio2, N-terminal APH PF01636.18 gi|336253659|ref|YP_004596766.1| - 1.1e-05 25.3 1.3 0.0012 18.6 0.9 2.9 1 1 0 1 1 1 1 Phosphotransferase enzyme family Pkinase PF00069.20 gi|336253659|ref|YP_004596766.1| - 0.00054 19.1 0.1 0.00087 18.5 0.1 1.4 1 1 0 1 1 1 1 Protein kinase domain WaaY PF06176.6 gi|336253659|ref|YP_004596766.1| - 0.015 14.5 0.0 0.023 13.8 0.0 1.2 1 0 0 1 1 1 0 Lipopolysaccharide core biosynthesis protein (WaaY) Peripla_BP_2 PF01497.13 gi|336253660|ref|YP_004596767.1| - 1.2e-20 73.6 0.0 2.5e-20 72.6 0.0 1.4 1 1 0 1 1 1 1 Periplasmic binding protein Ribosomal_L15e PF00827.12 gi|336253661|ref|YP_004596768.1| - 3.5e-84 281.1 5.4 4.1e-84 280.8 3.8 1.0 1 0 0 1 1 1 1 Ribosomal L15 Usp PF00582.21 gi|336253662|ref|YP_004596769.1| - 7.2e-34 116.9 0.5 8.2e-34 116.7 0.4 1.0 1 0 0 1 1 1 1 Universal stress protein family Pribosyltran PF00156.22 gi|336253663|ref|YP_004596770.1| - 9.3e-13 47.9 0.1 1.5e-12 47.3 0.1 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain HTH_3 PF01381.17 gi|336253663|ref|YP_004596770.1| - 0.00062 19.5 0.0 0.0021 17.8 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix HTH_IclR PF09339.5 gi|336253663|ref|YP_004596770.1| - 0.082 12.5 0.0 0.22 11.1 0.0 1.8 1 0 0 1 1 1 0 IclR helix-turn-helix domain PRTase_3 PF15610.1 gi|336253663|ref|YP_004596770.1| - 0.12 11.3 0.0 0.16 10.8 0.0 1.1 1 0 0 1 1 1 0 PRTase ComF-like HTH_10 PF04967.7 gi|336253664|ref|YP_004596771.1| - 7.1e-15 54.3 0.0 1.1e-14 53.7 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain VWA_3 PF13768.1 gi|336253664|ref|YP_004596771.1| - 0.0044 16.7 0.0 0.014 15.1 0.0 1.7 1 1 1 2 2 2 1 von Willebrand factor type A domain PEMT PF04191.8 gi|336253665|ref|YP_004596772.1| - 1.6e-17 63.5 0.2 1.6e-17 63.5 0.2 2.3 2 0 0 2 2 2 1 Phospholipid methyltransferase ICMT PF04140.9 gi|336253665|ref|YP_004596772.1| - 3.4e-05 23.9 0.1 7e-05 22.9 0.0 1.4 1 0 0 1 1 1 1 Isoprenylcysteine carboxyl methyltransferase (ICMT) family ERG4_ERG24 PF01222.12 gi|336253665|ref|YP_004596772.1| - 7.6e-05 21.4 0.1 0.00012 20.7 0.1 1.2 1 0 0 1 1 1 1 Ergosterol biosynthesis ERG4/ERG24 family Steroid_dh PF02544.11 gi|336253665|ref|YP_004596772.1| - 0.00033 20.4 0.0 0.00045 20.0 0.0 1.3 1 0 0 1 1 1 1 3-oxo-5-alpha-steroid 4-dehydrogenase DUF1295 PF06966.7 gi|336253665|ref|YP_004596772.1| - 0.00062 19.1 0.4 0.00077 18.8 0.3 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1295) EzrA PF06160.7 gi|336253666|ref|YP_004596773.1| - 0.07 11.3 0.1 0.5 8.4 0.0 2.2 2 0 0 2 2 2 0 Septation ring formation regulator, EzrA HisKA PF00512.20 gi|336253666|ref|YP_004596773.1| - 4.1 7.4 8.5 2.8 7.9 0.6 3.9 3 1 1 4 4 4 0 His Kinase A (phospho-acceptor) domain tRNA-synt_2b PF00587.20 gi|336253667|ref|YP_004596774.1| - 1.5e-39 135.3 0.1 2.5e-39 134.5 0.1 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|336253667|ref|YP_004596774.1| - 4e-17 61.9 0.6 4e-17 61.9 0.4 2.4 3 0 0 3 3 3 1 Anticodon binding domain tRNA_SAD PF07973.9 gi|336253667|ref|YP_004596774.1| - 2e-13 49.9 0.0 3.8e-13 49.0 0.0 1.5 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain TGS PF02824.16 gi|336253667|ref|YP_004596774.1| - 1.9e-12 46.7 0.1 4.1e-12 45.7 0.1 1.6 1 0 0 1 1 1 1 TGS domain HAD_2 PF13419.1 gi|336253668|ref|YP_004596775.1| - 2e-28 99.8 0.0 2.4e-28 99.5 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|336253668|ref|YP_004596775.1| - 3.1e-12 46.0 0.1 8.9e-12 44.5 0.1 1.7 2 0 0 2 2 2 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|336253668|ref|YP_004596775.1| - 6.7e-12 46.2 0.0 1.3e-11 45.3 0.0 1.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|336253668|ref|YP_004596775.1| - 0.0003 21.0 0.0 0.00053 20.2 0.0 1.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Acid_PPase PF12689.2 gi|336253668|ref|YP_004596775.1| - 0.0009 18.9 0.0 0.46 10.1 0.0 2.2 2 0 0 2 2 2 2 Acid Phosphatase Hydrolase_6 PF13344.1 gi|336253668|ref|YP_004596775.1| - 0.0026 17.6 0.0 0.0097 15.7 0.0 1.8 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Acid_phosphat_B PF03767.9 gi|336253668|ref|YP_004596775.1| - 0.015 14.6 0.0 1.1 8.5 0.0 2.2 2 0 0 2 2 2 0 HAD superfamily, subfamily IIIB (Acid phosphatase) Aldolase_II PF00596.16 gi|336253669|ref|YP_004596776.1| - 4.5e-42 143.7 0.3 5.5e-42 143.4 0.2 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain NUDIX PF00293.23 gi|336253670|ref|YP_004596777.1| - 6.1e-15 55.0 0.2 1e-14 54.3 0.1 1.3 1 0 0 1 1 1 1 NUDIX domain Pribosyltran PF00156.22 gi|336253671|ref|YP_004596778.1| - 6.9e-13 48.4 4.9 5.9e-12 45.4 3.4 2.2 1 1 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|336253671|ref|YP_004596778.1| - 0.00038 19.7 0.0 0.00042 19.5 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|336253671|ref|YP_004596778.1| - 0.02 14.2 0.7 0.029 13.6 0.3 1.4 1 1 0 1 1 1 0 Phosphoribosyl transferase CBS PF00571.23 gi|336253671|ref|YP_004596778.1| - 0.082 12.7 0.2 0.17 11.7 0.1 1.5 1 0 0 1 1 1 0 CBS domain UBA PF00627.26 gi|336253671|ref|YP_004596778.1| - 0.1 12.4 0.2 0.41 10.5 0.0 2.0 2 0 0 2 2 2 0 UBA/TS-N domain Abhydrolase_3 PF07859.8 gi|336253672|ref|YP_004596779.1| - 8.5e-76 254.2 0.5 1.1e-75 253.8 0.4 1.1 1 0 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|336253672|ref|YP_004596779.1| - 9.8e-09 35.1 0.1 1.5e-08 34.5 0.1 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family COesterase PF00135.23 gi|336253672|ref|YP_004596779.1| - 1.3e-06 27.4 0.0 6.1e-06 25.2 0.0 1.8 1 1 0 1 1 1 1 Carboxylesterase family Peptidase_S9 PF00326.16 gi|336253672|ref|YP_004596779.1| - 0.00025 20.3 0.1 0.007 15.6 0.0 2.2 2 0 0 2 2 2 1 Prolyl oligopeptidase family DUF2424 PF10340.4 gi|336253672|ref|YP_004596779.1| - 0.0088 14.7 0.0 0.013 14.1 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2424) Chlorophyllase2 PF12740.2 gi|336253672|ref|YP_004596779.1| - 0.026 13.4 0.0 0.036 12.9 0.0 1.2 1 0 0 1 1 1 0 Chlorophyllase enzyme DLH PF01738.13 gi|336253672|ref|YP_004596779.1| - 0.031 13.5 0.2 0.88 8.8 0.0 2.6 3 0 0 3 3 3 0 Dienelactone hydrolase family Thioesterase PF00975.15 gi|336253672|ref|YP_004596779.1| - 0.044 13.9 0.0 0.082 13.1 0.0 1.4 1 0 0 1 1 1 0 Thioesterase domain AXE1 PF05448.7 gi|336253672|ref|YP_004596779.1| - 0.12 10.8 0.0 0.65 8.4 0.0 1.9 2 0 0 2 2 2 0 Acetyl xylan esterase (AXE1) DUF46 PF01864.12 gi|336253673|ref|YP_004596780.1| - 1.3e-48 165.2 0.8 1.6e-48 164.9 0.6 1.0 1 0 0 1 1 1 1 Putative integral membrane protein DUF46 CTP_transf_1 PF01148.15 gi|336253673|ref|YP_004596780.1| - 3.9e-08 33.2 1.0 6.5e-08 32.5 0.2 1.7 1 1 0 1 1 1 1 Cytidylyltransferase family Gly-zipper_YMGG PF13441.1 gi|336253673|ref|YP_004596780.1| - 2.5 7.6 9.3 1.4 8.4 0.6 2.4 2 0 0 2 2 2 0 YMGG-like Gly-zipper Pro_dh PF01619.13 gi|336253674|ref|YP_004596781.1| - 5.5e-34 117.5 0.0 3.1e-33 115.0 0.0 1.9 1 1 0 1 1 1 1 Proline dehydrogenase PqqD PF05402.7 gi|336253674|ref|YP_004596781.1| - 0.016 15.1 1.4 0.098 12.6 0.0 2.8 3 0 0 3 3 3 0 Coenzyme PQQ synthesis protein D (PqqD) DUF502 PF04367.8 gi|336253675|ref|YP_004596782.1| - 5.5e-19 67.9 0.2 8.5e-19 67.3 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF502) DoxX PF07681.7 gi|336253676|ref|YP_004596783.1| - 1.3e-05 25.5 0.5 2e-05 24.9 0.3 1.3 1 0 0 1 1 1 1 DoxX HR_lesion PF05514.6 gi|336253676|ref|YP_004596783.1| - 1.6e-05 24.7 0.0 0.00017 21.4 0.0 1.9 1 1 1 2 2 2 1 HR-like lesion-inducing Aminotran_4 PF01063.14 gi|336253677|ref|YP_004596784.1| - 4e-47 160.6 0.0 4.8e-47 160.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class IV HTH_20 PF12840.2 gi|336253678|ref|YP_004596785.1| - 3.5e-12 45.9 0.8 5.4e-08 32.5 0.1 2.2 2 0 0 2 2 2 2 Helix-turn-helix domain MarR_2 PF12802.2 gi|336253678|ref|YP_004596785.1| - 5e-09 35.7 0.6 8.9e-06 25.2 0.2 2.4 2 0 0 2 2 2 2 MarR family HTH_24 PF13412.1 gi|336253678|ref|YP_004596785.1| - 1.6e-08 33.7 0.0 0.00024 20.4 0.0 2.2 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|336253678|ref|YP_004596785.1| - 1.8e-07 30.7 0.0 9.2e-06 25.2 0.0 2.3 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.1 gi|336253678|ref|YP_004596785.1| - 3e-06 27.4 0.0 0.00016 21.9 0.1 2.4 2 0 0 2 2 2 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|336253678|ref|YP_004596785.1| - 1.8e-05 24.3 0.1 0.00087 18.9 0.0 2.2 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|336253678|ref|YP_004596785.1| - 0.001 18.6 0.0 0.0022 17.5 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.17 gi|336253678|ref|YP_004596785.1| - 0.0013 18.3 0.0 0.013 15.1 0.0 2.2 2 0 0 2 2 2 1 MarR family Penicillinase_R PF03965.11 gi|336253678|ref|YP_004596785.1| - 0.008 16.2 0.0 0.82 9.7 0.0 2.2 1 1 0 2 2 2 1 Penicillinase repressor HTH_30 PF13556.1 gi|336253678|ref|YP_004596785.1| - 0.022 14.3 0.1 0.056 13.0 0.1 1.8 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain HTH_10 PF04967.7 gi|336253678|ref|YP_004596785.1| - 0.022 14.3 0.0 0.072 12.6 0.0 1.8 2 0 0 2 2 2 0 HTH DNA binding domain HTH_34 PF13601.1 gi|336253678|ref|YP_004596785.1| - 0.028 14.4 0.0 0.19 11.7 0.0 1.9 2 0 0 2 2 2 0 Winged helix DNA-binding domain RPA_C PF08784.6 gi|336253678|ref|YP_004596785.1| - 0.038 14.4 0.0 0.2 12.1 0.0 1.9 2 0 0 2 2 2 0 Replication protein A C terminal COX15-CtaA PF02628.10 gi|336253679|ref|YP_004596786.1| - 0.025 13.4 3.1 0.031 13.1 2.2 1.2 1 0 0 1 1 1 0 Cytochrome oxidase assembly protein 7TMR-DISM_7TM PF07695.6 gi|336253679|ref|YP_004596786.1| - 0.028 14.0 4.6 0.033 13.8 3.2 1.1 1 0 0 1 1 1 0 7TM diverse intracellular signalling DUF3792 PF12670.2 gi|336253679|ref|YP_004596786.1| - 0.093 12.6 6.4 0.28 11.0 1.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3792) DUF2142 PF09913.4 gi|336253679|ref|YP_004596786.1| - 0.32 9.6 4.5 0.18 10.4 1.9 1.4 1 1 0 1 1 1 0 Predicted membrane protein (DUF2142) Transport_MerF PF11431.3 gi|336253679|ref|YP_004596786.1| - 0.38 10.4 4.6 0.88 9.2 1.4 2.8 2 1 0 2 2 2 0 Membrane transport protein MerF DUF4383 PF14325.1 gi|336253679|ref|YP_004596786.1| - 0.66 10.0 6.0 0.9 9.5 4.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4383) DUF3311 PF11755.3 gi|336253679|ref|YP_004596786.1| - 3 7.4 6.3 7.9 6.1 0.0 2.9 2 1 1 3 3 3 0 Protein of unknown function (DUF3311) DHBP_synthase PF00926.14 gi|336253680|ref|YP_004596787.1| - 2.7e-59 199.6 0.0 3.1e-59 199.4 0.0 1.0 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase Ribosomal_S24e PF01282.14 gi|336253680|ref|YP_004596787.1| - 0.028 14.2 0.0 0.047 13.4 0.0 1.4 1 0 0 1 1 1 0 Ribosomal protein S24e CTP-dep_RFKase PF01982.11 gi|336253681|ref|YP_004596788.1| - 2e-44 150.1 0.0 2.9e-44 149.5 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF120 HTH_20 PF12840.2 gi|336253681|ref|YP_004596788.1| - 2.4e-07 30.4 1.0 4e-07 29.7 0.7 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|336253681|ref|YP_004596788.1| - 1.1e-05 24.9 0.6 2.1e-05 24.0 0.4 1.5 1 0 0 1 1 1 1 MarR family HTH_AsnC-type PF13404.1 gi|336253681|ref|YP_004596788.1| - 4.5e-05 22.8 0.8 4.5e-05 22.8 0.5 1.9 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|336253681|ref|YP_004596788.1| - 8.3e-05 21.8 0.1 0.00015 21.1 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|336253681|ref|YP_004596788.1| - 0.00028 21.1 0.3 0.00048 20.3 0.2 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.17 gi|336253681|ref|YP_004596788.1| - 0.00058 19.5 0.0 0.0012 18.4 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|336253681|ref|YP_004596788.1| - 0.0014 18.1 0.1 0.0025 17.4 0.1 1.4 1 0 0 1 1 1 1 HTH domain Fe_dep_repress PF01325.14 gi|336253681|ref|YP_004596788.1| - 0.0015 18.3 0.0 0.0035 17.2 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_34 PF13601.1 gi|336253681|ref|YP_004596788.1| - 0.0046 16.9 0.0 0.0096 15.9 0.0 1.6 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_DeoR PF08220.7 gi|336253681|ref|YP_004596788.1| - 0.0094 15.4 0.1 0.017 14.6 0.1 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|336253681|ref|YP_004596788.1| - 0.012 15.3 0.0 0.025 14.3 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_1 PF00126.22 gi|336253681|ref|YP_004596788.1| - 0.013 15.2 0.1 0.03 14.0 0.1 1.6 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_IclR PF09339.5 gi|336253681|ref|YP_004596788.1| - 0.11 12.0 0.9 0.18 11.4 0.6 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain GntR PF00392.16 gi|336253681|ref|YP_004596788.1| - 0.14 11.5 0.4 0.27 10.6 0.2 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family DICT PF10069.4 gi|336253682|ref|YP_004596789.1| - 4.8e-14 52.0 0.0 8.7e-14 51.1 0.0 1.4 1 0 0 1 1 1 1 Sensory domain found in DIguanylate Cyclases & Two-component systems MarR_2 PF12802.2 gi|336253683|ref|YP_004596790.1| - 3.7e-08 32.9 0.6 7.5e-07 28.7 0.3 2.4 2 0 0 2 2 2 1 MarR family MarR PF01047.17 gi|336253683|ref|YP_004596790.1| - 4.5e-08 32.6 0.0 9.7e-08 31.6 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|336253683|ref|YP_004596790.1| - 3.9e-07 29.3 0.0 7.2e-07 28.5 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|336253683|ref|YP_004596790.1| - 3.9e-07 29.6 0.0 7.1e-07 28.8 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|336253683|ref|YP_004596790.1| - 1.9e-06 27.4 0.0 4.1e-06 26.3 0.0 1.6 2 0 0 2 2 1 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.5 gi|336253683|ref|YP_004596790.1| - 6.4e-06 25.6 0.4 6.4e-05 22.4 0.1 2.2 2 0 0 2 2 2 1 IclR helix-turn-helix domain GntR PF00392.16 gi|336253683|ref|YP_004596790.1| - 1.8e-05 24.0 0.1 4.1e-05 22.9 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_20 PF12840.2 gi|336253683|ref|YP_004596790.1| - 0.00039 20.1 0.1 0.00087 19.0 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|336253683|ref|YP_004596790.1| - 0.00064 20.0 0.0 0.0013 19.0 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_11 PF08279.7 gi|336253683|ref|YP_004596790.1| - 0.0013 18.3 0.0 0.0029 17.1 0.0 1.5 1 0 0 1 1 1 1 HTH domain Penicillinase_R PF03965.11 gi|336253683|ref|YP_004596790.1| - 0.0043 17.1 0.0 0.0075 16.3 0.0 1.4 1 0 0 1 1 1 1 Penicillinase repressor HTH_Crp_2 PF13545.1 gi|336253683|ref|YP_004596790.1| - 0.017 14.8 0.0 0.037 13.8 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_34 PF13601.1 gi|336253683|ref|YP_004596790.1| - 0.018 15.0 0.0 0.028 14.4 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF1724 PF08350.5 gi|336253683|ref|YP_004596790.1| - 0.025 14.1 0.0 0.044 13.3 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1724) Fe_dep_repress PF01325.14 gi|336253683|ref|YP_004596790.1| - 0.044 13.7 0.0 0.11 12.4 0.0 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Ribosomal_S19e PF01090.14 gi|336253683|ref|YP_004596790.1| - 0.055 12.8 0.0 0.088 12.2 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein S19e HTH_DeoR PF08220.7 gi|336253683|ref|YP_004596790.1| - 0.07 12.6 0.0 0.12 11.9 0.0 1.3 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_20 PF12840.2 gi|336253684|ref|YP_004596791.1| - 0.0094 15.7 0.3 0.11 12.3 0.2 2.3 1 1 0 1 1 1 1 Helix-turn-helix domain Radical_SAM PF04055.16 gi|336253685|ref|YP_004596792.1| - 8.3e-20 71.6 0.8 3e-19 69.8 0.5 1.8 1 1 0 1 1 1 1 Radical SAM superfamily Wyosine_form PF08608.7 gi|336253685|ref|YP_004596792.1| - 2.1e-18 66.1 0.0 1.2e-17 63.7 0.0 2.1 2 0 0 2 2 2 1 Wyosine base formation HAD_2 PF13419.1 gi|336253685|ref|YP_004596792.1| - 0.0014 18.8 0.2 0.009 16.2 0.0 2.3 2 1 1 3 3 3 1 Haloacid dehalogenase-like hydrolase Fer4_12 PF13353.1 gi|336253685|ref|YP_004596792.1| - 0.13 12.4 0.0 0.29 11.2 0.0 1.6 1 1 0 1 1 1 0 4Fe-4S single cluster domain IncA PF04156.9 gi|336253686|ref|YP_004596793.1| - 0.052 13.1 0.2 0.088 12.3 0.2 1.5 1 1 0 1 1 1 0 IncA protein DUF2154 PF09922.4 gi|336253686|ref|YP_004596793.1| - 0.41 10.3 3.9 34 4.1 0.0 3.0 3 0 0 3 3 3 0 Cell wall-active antibiotics response protein (DUF2154) Med15 PF09606.5 gi|336253686|ref|YP_004596793.1| - 0.68 8.0 20.6 0.74 7.9 14.3 1.0 1 0 0 1 1 1 0 ARC105 or Med15 subunit of Mediator complex non-fungal Phycoerythr_ab PF02972.9 gi|336253686|ref|YP_004596793.1| - 1.3 8.6 4.5 24 4.5 0.1 3.0 3 0 0 3 3 3 0 Phycoerythrin, alpha/beta chain SAD_SRA PF02182.12 gi|336253686|ref|YP_004596793.1| - 2.8 7.2 12.1 3.8 6.8 0.7 2.5 1 1 2 3 3 3 0 SAD/SRA domain HTH_20 PF12840.2 gi|336253687|ref|YP_004596794.1| - 9.9e-07 28.4 0.1 2.8e-06 27.0 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|336253687|ref|YP_004596794.1| - 3.1e-05 23.5 0.1 6.8e-05 22.4 0.1 1.5 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|336253687|ref|YP_004596794.1| - 3.5e-05 23.4 0.0 7.1e-05 22.4 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|336253687|ref|YP_004596794.1| - 0.00024 20.4 0.1 0.0014 17.9 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|336253687|ref|YP_004596794.1| - 0.0026 18.0 0.1 0.0052 17.0 0.1 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_DeoR PF08220.7 gi|336253687|ref|YP_004596794.1| - 0.0027 17.1 0.5 0.0051 16.3 0.3 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_34 PF13601.1 gi|336253687|ref|YP_004596794.1| - 0.003 17.5 0.0 0.0054 16.7 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain GntR PF00392.16 gi|336253687|ref|YP_004596794.1| - 0.0045 16.4 0.2 0.011 15.1 0.2 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HxlR PF01638.12 gi|336253687|ref|YP_004596794.1| - 0.014 14.9 0.2 0.034 13.7 0.2 1.6 1 1 0 1 1 1 0 HxlR-like helix-turn-helix HTH_5 PF01022.15 gi|336253687|ref|YP_004596794.1| - 0.022 14.4 0.1 0.039 13.6 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_11 PF08279.7 gi|336253687|ref|YP_004596794.1| - 0.029 14.0 0.3 0.056 13.0 0.2 1.4 1 0 0 1 1 1 0 HTH domain HIG_1_N PF04588.8 gi|336253688|ref|YP_004596795.1| - 0.055 13.2 0.1 0.055 13.2 0.1 2.0 2 1 0 2 2 2 0 Hypoxia induced protein conserved region Fe-ADH PF00465.14 gi|336253689|ref|YP_004596796.1| - 3.2e-114 381.3 5.1 3.6e-114 381.2 3.5 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.1 gi|336253689|ref|YP_004596796.1| - 2.7e-17 62.9 1.5 1.4e-12 47.4 0.2 2.1 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase Peripla_BP_6 PF13458.1 gi|336253689|ref|YP_004596796.1| - 0.0018 17.6 0.8 0.0041 16.5 0.6 1.5 1 0 0 1 1 1 1 Periplasmic binding protein Borrelia_P83 PF05262.6 gi|336253689|ref|YP_004596796.1| - 0.099 10.9 0.0 0.18 10.0 0.0 1.3 1 0 0 1 1 1 0 Borrelia P83/100 protein Pyridox_oxidase PF01243.15 gi|336253691|ref|YP_004596798.1| - 0.0019 18.1 0.0 0.0028 17.6 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_ox_2 PF12900.2 gi|336253691|ref|YP_004596798.1| - 0.12 12.2 0.0 0.16 11.8 0.0 1.3 1 1 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase Hydrolase_3 PF08282.7 gi|336253692|ref|YP_004596799.1| - 4.7e-23 82.0 0.0 4.4e-16 59.2 0.0 2.1 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.8 gi|336253692|ref|YP_004596799.1| - 2e-05 24.0 0.0 0.00018 20.8 0.0 2.0 2 0 0 2 2 2 1 Sucrose-6F-phosphate phosphohydrolase Hydrolase PF00702.21 gi|336253692|ref|YP_004596799.1| - 0.00031 21.2 2.8 0.011 16.1 1.9 2.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|336253692|ref|YP_004596799.1| - 0.004 17.3 0.9 0.23 11.5 0.0 2.7 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase SBP_bac_8 PF13416.1 gi|336253693|ref|YP_004596800.1| - 4.8e-45 154.4 2.6 6.2e-45 154.0 1.8 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|336253693|ref|YP_004596800.1| - 1.1e-32 114.0 2.8 1.4e-32 113.7 1.9 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|336253693|ref|YP_004596800.1| - 0.0023 17.5 0.0 0.046 13.3 0.0 2.9 3 0 0 3 3 3 1 Bacterial extracellular solute-binding protein LGFP PF08310.6 gi|336253693|ref|YP_004596800.1| - 0.0064 16.1 0.0 0.023 14.3 0.0 2.0 1 0 0 1 1 1 1 LGFP repeat BPD_transp_1 PF00528.17 gi|336253694|ref|YP_004596801.1| - 2.7e-17 62.8 11.9 2.7e-17 62.8 8.3 2.3 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|336253695|ref|YP_004596802.1| - 4e-13 49.3 17.6 4e-13 49.3 12.2 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DDE_Tnp_IS66_C PF13817.1 gi|336253695|ref|YP_004596802.1| - 0.0066 16.4 0.0 0.013 15.4 0.0 1.5 1 0 0 1 1 1 1 IS66 C-terminal element UPF0182 PF03699.8 gi|336253695|ref|YP_004596802.1| - 0.068 11.1 1.3 0.068 11.1 0.9 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0182) ABC_tran PF00005.22 gi|336253696|ref|YP_004596803.1| - 8.3e-32 110.3 0.0 1.2e-31 109.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.5 gi|336253696|ref|YP_004596803.1| - 1.1e-08 34.8 0.4 2.1e-07 30.8 0.1 2.7 2 0 0 2 2 2 1 TOBE domain AAA_21 PF13304.1 gi|336253696|ref|YP_004596803.1| - 3.3e-08 33.8 0.0 0.0048 16.9 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|336253696|ref|YP_004596803.1| - 2e-05 23.9 0.0 3.7e-05 23.0 0.0 1.3 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain Rad17 PF03215.10 gi|336253696|ref|YP_004596803.1| - 0.00073 18.3 0.0 0.0012 17.6 0.0 1.2 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA_22 PF13401.1 gi|336253696|ref|YP_004596803.1| - 0.0015 18.6 0.2 0.0041 17.2 0.2 1.8 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|336253696|ref|YP_004596803.1| - 0.0017 18.3 0.1 0.0045 16.9 0.0 1.7 2 0 0 2 2 2 1 AAA ATPase domain TOBE PF03459.12 gi|336253696|ref|YP_004596803.1| - 0.0017 18.3 0.3 0.081 13.0 0.0 3.5 5 0 0 5 5 4 1 TOBE domain AAA_10 PF12846.2 gi|336253696|ref|YP_004596803.1| - 0.0055 16.1 0.0 0.014 14.8 0.0 1.6 2 0 0 2 2 2 1 AAA-like domain DUF258 PF03193.11 gi|336253696|ref|YP_004596803.1| - 0.012 14.8 0.0 0.018 14.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|336253696|ref|YP_004596803.1| - 0.016 14.6 0.0 0.031 13.7 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_19 PF13245.1 gi|336253696|ref|YP_004596803.1| - 0.033 13.9 0.1 0.24 11.1 0.0 2.3 2 0 0 2 2 2 0 Part of AAA domain AAA_25 PF13481.1 gi|336253696|ref|YP_004596803.1| - 0.036 13.4 0.2 0.28 10.5 0.2 2.2 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|336253696|ref|YP_004596803.1| - 0.061 13.6 0.0 0.094 13.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain Miro PF08477.8 gi|336253696|ref|YP_004596803.1| - 0.075 13.5 0.0 0.19 12.2 0.0 1.7 1 0 0 1 1 1 0 Miro-like protein AAA_33 PF13671.1 gi|336253696|ref|YP_004596803.1| - 0.096 12.5 0.3 0.17 11.7 0.2 1.7 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.1 gi|336253696|ref|YP_004596803.1| - 0.12 11.4 0.0 1.6 7.6 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_17 PF13207.1 gi|336253696|ref|YP_004596803.1| - 0.2 12.4 0.8 0.46 11.3 0.6 1.9 1 1 0 1 1 1 0 AAA domain GDPD PF03009.12 gi|336253697|ref|YP_004596804.1| - 6.4e-30 104.4 0.0 2.3e-19 69.8 0.0 2.0 1 1 1 2 2 2 2 Glycerophosphoryl diester phosphodiesterase family TAT_signal PF10518.4 gi|336253697|ref|YP_004596804.1| - 0.13 12.3 3.4 0.28 11.2 2.3 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence PAP2 PF01569.16 gi|336253698|ref|YP_004596805.1| - 0.022 14.4 0.8 0.022 14.4 0.5 2.6 3 1 0 3 3 3 0 PAP2 superfamily FGGY_N PF00370.16 gi|336253699|ref|YP_004596806.1| - 2.8e-79 265.8 0.0 3.7e-79 265.5 0.0 1.1 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.11 gi|336253699|ref|YP_004596806.1| - 2.3e-58 197.1 0.3 5.1e-58 195.9 0.2 1.6 2 0 0 2 2 2 1 FGGY family of carbohydrate kinases, C-terminal domain BcrAD_BadFG PF01869.15 gi|336253699|ref|YP_004596806.1| - 0.00045 19.6 0.3 0.0017 17.7 0.0 1.9 2 0 0 2 2 2 1 BadF/BadG/BcrA/BcrD ATPase family DAO PF01266.19 gi|336253700|ref|YP_004596807.1| - 3.8e-62 210.2 1.2 5.2e-62 209.8 0.8 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Fer2_BFD PF04324.10 gi|336253700|ref|YP_004596807.1| - 7.5e-10 38.7 2.8 1.4e-09 37.8 0.8 2.5 2 0 0 2 2 2 1 BFD-like [2Fe-2S] binding domain FAD_binding_3 PF01494.14 gi|336253700|ref|YP_004596807.1| - 4.9e-09 35.6 0.8 0.00023 20.3 0.0 2.2 2 0 0 2 2 2 2 FAD binding domain Pyr_redox_2 PF07992.9 gi|336253700|ref|YP_004596807.1| - 3.1e-08 33.7 0.3 0.00042 20.2 0.1 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|336253700|ref|YP_004596807.1| - 9e-08 31.3 3.2 4.1e-07 29.2 2.2 1.9 1 1 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.2 gi|336253700|ref|YP_004596807.1| - 3.7e-05 22.9 5.6 0.0002 20.5 3.9 1.9 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox PF00070.22 gi|336253700|ref|YP_004596807.1| - 0.00019 21.7 1.4 0.00077 19.8 0.5 2.4 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|336253700|ref|YP_004596807.1| - 0.00089 19.3 0.1 0.4 10.7 0.0 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|336253700|ref|YP_004596807.1| - 0.0014 18.3 0.1 0.0024 17.5 0.1 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_8 PF13450.1 gi|336253700|ref|YP_004596807.1| - 0.0031 17.5 0.5 0.011 15.7 0.4 2.0 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain ApbA PF02558.11 gi|336253700|ref|YP_004596807.1| - 0.018 14.4 0.2 0.034 13.5 0.1 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA GIDA PF01134.17 gi|336253700|ref|YP_004596807.1| - 0.046 12.5 0.4 0.076 11.8 0.3 1.3 1 0 0 1 1 1 0 Glucose inhibited division protein A YbjQ_1 PF01906.12 gi|336253700|ref|YP_004596807.1| - 0.048 14.0 0.0 0.13 12.7 0.0 1.7 1 0 0 1 1 1 0 Putative heavy-metal-binding Thi4 PF01946.12 gi|336253700|ref|YP_004596807.1| - 0.053 12.6 0.7 0.14 11.2 0.1 1.9 2 0 0 2 2 2 0 Thi4 family HI0933_like PF03486.9 gi|336253700|ref|YP_004596807.1| - 0.07 11.5 0.6 0.15 10.4 0.1 1.7 2 0 0 2 2 2 0 HI0933-like protein NAD_binding_10 PF13460.1 gi|336253700|ref|YP_004596807.1| - 0.087 12.8 0.5 0.2 11.6 0.3 1.6 1 0 0 1 1 1 0 NADH(P)-binding ThiF PF00899.16 gi|336253700|ref|YP_004596807.1| - 0.096 12.5 0.4 0.2 11.4 0.3 1.5 1 0 0 1 1 1 0 ThiF family DUF3606 PF12244.3 gi|336253700|ref|YP_004596807.1| - 0.12 12.0 0.0 0.35 10.5 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3606) Lycopene_cycl PF05834.7 gi|336253700|ref|YP_004596807.1| - 0.15 10.9 0.2 0.34 9.7 0.1 1.5 1 0 0 1 1 1 0 Lycopene cyclase protein FAD_binding_2 PF00890.19 gi|336253701|ref|YP_004596808.1| - 1.5e-36 126.2 3.1 1.7e-36 125.9 2.2 1.0 1 0 0 1 1 1 1 FAD binding domain DAO PF01266.19 gi|336253701|ref|YP_004596808.1| - 1.7e-10 40.3 0.2 2.1e-05 23.6 0.0 2.5 2 0 0 2 2 2 2 FAD dependent oxidoreductase GIDA PF01134.17 gi|336253701|ref|YP_004596808.1| - 7.3e-08 31.6 0.1 7.3e-08 31.6 0.1 2.1 3 0 0 3 3 3 1 Glucose inhibited division protein A FAD_oxidored PF12831.2 gi|336253701|ref|YP_004596808.1| - 4.2e-07 29.4 2.4 3.4e-06 26.4 1.3 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|336253701|ref|YP_004596808.1| - 1.9e-06 27.9 0.0 0.00025 20.9 0.0 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|336253701|ref|YP_004596808.1| - 7.3e-06 25.2 0.6 7.2e-05 21.9 0.5 2.1 2 0 0 2 2 2 1 FAD binding domain HI0933_like PF03486.9 gi|336253701|ref|YP_004596808.1| - 1.2e-05 23.9 0.3 1.2e-05 23.9 0.2 2.0 3 0 0 3 3 3 1 HI0933-like protein Pyr_redox PF00070.22 gi|336253701|ref|YP_004596808.1| - 2.4e-05 24.6 0.1 0.0018 18.6 0.3 2.6 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|336253701|ref|YP_004596808.1| - 0.0025 17.4 0.0 0.004 16.8 0.0 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_10 PF13460.1 gi|336253701|ref|YP_004596808.1| - 0.017 15.1 0.1 0.046 13.7 0.1 1.7 1 0 0 1 1 1 0 NADH(P)-binding AlaDh_PNT_C PF01262.16 gi|336253701|ref|YP_004596808.1| - 0.051 13.1 0.2 0.11 12.1 0.1 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Trp_halogenase PF04820.9 gi|336253701|ref|YP_004596808.1| - 0.064 11.8 0.3 0.064 11.8 0.2 1.4 2 0 0 2 2 2 0 Tryptophan halogenase Lycopene_cycl PF05834.7 gi|336253701|ref|YP_004596808.1| - 0.15 10.9 0.4 0.23 10.3 0.2 1.2 1 0 0 1 1 1 0 Lycopene cyclase protein NAD_binding_8 PF13450.1 gi|336253701|ref|YP_004596808.1| - 0.31 11.0 4.6 0.097 12.7 0.4 2.3 3 0 0 3 3 3 0 NAD(P)-binding Rossmann-like domain CCG PF02754.11 gi|336253702|ref|YP_004596809.1| - 3.6e-23 81.3 0.9 2.2e-11 43.5 0.0 2.7 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|336253702|ref|YP_004596809.1| - 2.4e-06 27.4 8.3 2.4e-06 27.4 5.8 2.7 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|336253702|ref|YP_004596809.1| - 3.1e-05 24.2 10.8 3.1e-05 24.2 7.5 3.2 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|336253702|ref|YP_004596809.1| - 0.00013 22.3 7.7 0.082 13.3 0.3 3.7 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|336253702|ref|YP_004596809.1| - 0.0015 18.7 17.2 0.015 15.5 9.6 3.4 3 1 1 4 4 3 2 4Fe-4S dicluster domain zf-CSL PF05207.8 gi|336253702|ref|YP_004596809.1| - 0.0032 16.9 7.8 0.59 9.6 0.0 3.7 3 0 0 3 3 3 2 CSL zinc finger Fer4_10 PF13237.1 gi|336253702|ref|YP_004596809.1| - 0.0067 16.1 14.2 0.0067 16.1 9.8 3.1 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|336253702|ref|YP_004596809.1| - 0.016 15.9 10.7 0.016 15.9 7.4 2.9 3 1 1 4 4 4 0 4Fe-4S double cluster binding domain DUF3390 PF11870.3 gi|336253702|ref|YP_004596809.1| - 0.039 13.8 0.0 0.07 13.0 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3390) DDE_Tnp_ISAZ013 PF07592.6 gi|336253702|ref|YP_004596809.1| - 0.11 11.2 0.1 0.3 9.7 0.0 1.7 2 0 0 2 2 2 0 Rhodopirellula transposase DDE domain Fer4_21 PF14697.1 gi|336253702|ref|YP_004596809.1| - 0.14 12.0 12.6 0.17 11.7 0.5 3.1 4 0 0 4 4 3 0 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|336253702|ref|YP_004596809.1| - 0.54 10.6 20.6 0.14 12.5 10.1 2.9 3 1 1 4 4 3 0 4Fe-4S dicluster domain Fer4 PF00037.22 gi|336253702|ref|YP_004596809.1| - 1.7 8.3 15.2 1.2 8.8 2.3 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain AAA_16 PF13191.1 gi|336253703|ref|YP_004596810.1| - 7.5e-09 35.8 5.2 1.4e-07 31.7 3.6 2.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|336253703|ref|YP_004596810.1| - 8.8e-06 25.8 0.0 3.3e-05 24.0 0.0 1.9 2 0 0 2 2 2 1 AAA domain HTH_IclR PF09339.5 gi|336253703|ref|YP_004596810.1| - 0.0011 18.5 0.0 0.0039 16.7 0.0 2.0 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|336253703|ref|YP_004596810.1| - 0.0028 16.9 0.0 0.006 15.9 0.0 1.6 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|336253703|ref|YP_004596810.1| - 0.01 15.5 0.0 0.021 14.5 0.0 1.5 1 0 0 1 1 1 0 MarR family FaeA PF04703.7 gi|336253703|ref|YP_004596810.1| - 0.015 15.4 0.0 0.029 14.5 0.0 1.4 1 0 0 1 1 1 0 FaeA-like protein TrmB PF01978.14 gi|336253703|ref|YP_004596810.1| - 0.019 14.6 0.0 0.04 13.6 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Guanylate_kin PF00625.16 gi|336253703|ref|YP_004596810.1| - 0.027 13.8 0.0 0.051 13.0 0.0 1.4 1 0 0 1 1 1 0 Guanylate kinase DUF457 PF04307.9 gi|336253706|ref|YP_004596813.1| - 2.6e-12 46.3 10.7 3.3e-12 46.0 7.4 1.1 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) DUF3307 PF11750.3 gi|336253706|ref|YP_004596813.1| - 0.19 11.5 0.6 1.7 8.4 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3307) tRNA_anti-codon PF01336.20 gi|336253707|ref|YP_004596814.1| - 0.052 13.4 0.1 0.083 12.7 0.0 1.3 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain Rep_fac-A_3 PF08661.6 gi|336253707|ref|YP_004596814.1| - 0.11 12.3 0.0 0.17 11.7 0.0 1.2 1 0 0 1 1 1 0 Replication factor A protein 3 VanZ PF04892.7 gi|336253708|ref|YP_004596815.1| - 7.4e-08 32.4 0.1 8.8e-08 32.1 0.1 1.1 1 0 0 1 1 1 1 VanZ like family DUF1072 PF06380.6 gi|336253708|ref|YP_004596815.1| - 0.13 11.9 2.3 0.45 10.2 0.1 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF1072) Polysacc_deac_1 PF01522.16 gi|336253709|ref|YP_004596816.1| - 8.6e-23 80.3 0.0 1.6e-22 79.4 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide deacetylase PIN PF01850.16 gi|336253710|ref|YP_004596817.1| - 6.3e-07 29.7 3.2 7.5e-07 29.5 2.2 1.1 1 0 0 1 1 1 1 PIN domain SQS_PSY PF00494.14 gi|336253711|ref|YP_004596818.1| - 0.0091 15.3 0.1 0.01 15.1 0.1 1.1 1 0 0 1 1 1 1 Squalene/phytoene synthase Antitoxin-MazE PF04014.13 gi|336253711|ref|YP_004596818.1| - 0.076 12.7 0.0 0.11 12.2 0.0 1.4 1 0 0 1 1 1 0 Antidote-toxin recognition MazE MraZ PF02381.13 gi|336253711|ref|YP_004596818.1| - 0.15 11.8 0.2 0.31 10.8 0.0 1.6 2 0 0 2 2 2 0 MraZ protein Aldo_ket_red PF00248.16 gi|336253712|ref|YP_004596819.1| - 2e-71 240.1 0.0 2.4e-71 239.8 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family Sigma70_r3 PF04539.11 gi|336253713|ref|YP_004596820.1| - 0.00098 18.9 0.7 0.0011 18.8 0.5 1.2 1 0 0 1 1 1 1 Sigma-70 region 3 GntR PF00392.16 gi|336253713|ref|YP_004596820.1| - 0.14 11.5 0.2 0.16 11.3 0.2 1.2 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family CBM_4_9 PF02018.12 gi|336253715|ref|YP_004596822.1| - 0.0029 17.6 0.1 0.0041 17.1 0.1 1.2 1 0 0 1 1 1 1 Carbohydrate binding domain Glycos_transf_2 PF00535.21 gi|336253717|ref|YP_004596824.1| - 6.2e-27 94.3 0.1 9.7e-27 93.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|336253717|ref|YP_004596824.1| - 9.2e-18 64.8 0.2 1.6e-17 64.0 0.1 1.3 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|336253717|ref|YP_004596824.1| - 3.9e-06 26.7 0.3 9.8e-06 25.4 0.2 1.7 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_2 PF10111.4 gi|336253717|ref|YP_004596824.1| - 1.4e-05 24.2 0.0 2e-05 23.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 LIP PF03583.9 gi|336253717|ref|YP_004596824.1| - 0.067 12.3 0.0 0.15 11.1 0.0 1.5 2 0 0 2 2 2 0 Secretory lipase PD40 PF07676.7 gi|336253718|ref|YP_004596825.1| - 0.0022 17.5 0.8 2.6 7.8 0.0 3.7 3 0 0 3 3 3 2 WD40-like Beta Propeller Repeat Glycos_transf_1 PF00534.15 gi|336253719|ref|YP_004596826.1| - 1.5e-17 63.5 0.0 2.3e-17 62.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|336253719|ref|YP_004596826.1| - 1.3e-12 47.9 0.0 3.6e-12 46.5 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|336253719|ref|YP_004596826.1| - 1.3e-09 38.0 0.0 2.2e-09 37.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.1 gi|336253719|ref|YP_004596826.1| - 1.1e-07 32.0 0.0 1.8e-07 31.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.1 gi|336253719|ref|YP_004596826.1| - 0.0022 17.8 0.0 0.0076 16.0 0.0 1.8 1 1 1 2 2 2 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.1 gi|336253719|ref|YP_004596826.1| - 0.053 13.7 0.0 0.11 12.8 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferases group 1 Glycos_transf_1 PF00534.15 gi|336253721|ref|YP_004596828.1| - 3.5e-39 133.9 0.0 6e-39 133.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|336253721|ref|YP_004596828.1| - 7.2e-19 68.2 0.0 1.5e-18 67.2 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|336253721|ref|YP_004596828.1| - 5.1e-17 62.1 0.0 8.1e-17 61.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.1 gi|336253721|ref|YP_004596828.1| - 1.2e-10 41.7 0.0 1.8e-10 41.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|336253721|ref|YP_004596828.1| - 5.2e-09 36.2 0.0 1e-08 35.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 PhdYeFM_antitox PF02604.14 gi|336253721|ref|YP_004596828.1| - 0.025 14.1 0.0 0.089 12.3 0.0 1.9 1 0 0 1 1 1 0 Antitoxin Phd_YefM, type II toxin-antitoxin system Glyco_trans_4_2 PF13477.1 gi|336253721|ref|YP_004596828.1| - 0.041 13.7 0.0 0.12 12.2 0.0 1.8 1 0 0 1 1 1 0 Glycosyl transferase 4-like TrkA_N PF02254.13 gi|336253721|ref|YP_004596828.1| - 0.1 12.6 0.0 0.25 11.3 0.0 1.7 1 0 0 1 1 1 0 TrkA-N domain YjeF_N PF03853.10 gi|336253721|ref|YP_004596828.1| - 0.11 12.1 0.0 14 5.1 0.0 2.4 2 0 0 2 2 2 0 YjeF-related protein N-terminus DUF3732 PF12532.3 gi|336253721|ref|YP_004596828.1| - 0.11 12.0 0.5 0.34 10.3 0.0 2.0 3 0 0 3 3 3 0 Protein of unknown function (DUF3732) Glycos_transf_1 PF00534.15 gi|336253722|ref|YP_004596829.1| - 4.4e-29 101.0 0.0 7.4e-29 100.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|336253722|ref|YP_004596829.1| - 7.2e-15 55.3 0.0 1.7e-14 54.1 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|336253722|ref|YP_004596829.1| - 1.9e-08 34.6 0.0 4.1e-08 33.5 0.0 1.6 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|336253722|ref|YP_004596829.1| - 5.8e-08 32.6 0.0 0.00085 19.0 0.0 2.6 2 0 0 2 2 2 2 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|336253722|ref|YP_004596829.1| - 0.0014 18.8 0.0 0.0026 17.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Polysacc_synt_C PF14667.1 gi|336253723|ref|YP_004596830.1| - 3e-18 66.0 18.9 3e-18 66.0 13.1 3.9 3 1 0 4 4 4 2 Polysaccharide biosynthesis C-terminal domain Polysacc_synt PF01943.12 gi|336253723|ref|YP_004596830.1| - 1.9e-17 63.4 23.3 1.9e-17 63.4 16.1 2.4 2 1 1 3 3 3 1 Polysaccharide biosynthesis protein MVIN PF03023.9 gi|336253723|ref|YP_004596830.1| - 1.9e-05 23.3 18.1 1.9e-05 23.3 12.5 2.8 2 1 0 2 2 2 1 MviN-like protein Methyltransf_21 PF05050.7 gi|336253724|ref|YP_004596831.1| - 9.7e-26 90.6 0.0 5.6e-25 88.2 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase FkbM domain Methyltransf_18 PF12847.2 gi|336253724|ref|YP_004596831.1| - 6.9e-09 36.2 0.0 1.1e-08 35.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|336253724|ref|YP_004596831.1| - 0.00071 19.1 0.0 0.0011 18.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.11 gi|336253724|ref|YP_004596831.1| - 0.0026 17.3 0.0 0.0044 16.6 0.0 1.3 1 0 0 1 1 1 1 Met-10+ like-protein MTS PF05175.9 gi|336253724|ref|YP_004596831.1| - 0.01 15.2 0.0 0.018 14.4 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase small domain V_cholerae_RfbT PF05575.6 gi|336253724|ref|YP_004596831.1| - 0.043 12.8 0.0 0.18 10.8 0.0 1.8 2 0 0 2 2 2 0 Vibrio cholerae RfbT protein Methyltransf_23 PF13489.1 gi|336253724|ref|YP_004596831.1| - 0.051 13.2 0.0 0.29 10.8 0.0 2.1 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_4 PF02390.12 gi|336253724|ref|YP_004596831.1| - 0.075 12.0 0.0 0.13 11.2 0.0 1.3 1 0 0 1 1 1 0 Putative methyltransferase DUF1601 PF07671.6 gi|336253724|ref|YP_004596831.1| - 0.12 12.0 0.1 0.21 11.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1601) Epimerase PF01370.16 gi|336253726|ref|YP_004596833.1| - 6.5e-64 215.5 0.1 7.9e-64 215.3 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|336253726|ref|YP_004596833.1| - 3e-28 98.3 0.0 4e-28 97.9 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|336253726|ref|YP_004596833.1| - 9.9e-26 90.2 0.1 1.3e-25 89.9 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.10 gi|336253726|ref|YP_004596833.1| - 1.3e-21 76.8 0.3 2e-20 72.9 0.2 2.4 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|336253726|ref|YP_004596833.1| - 5.1e-19 68.1 0.1 1.1e-16 60.5 0.1 2.3 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.1 gi|336253726|ref|YP_004596833.1| - 4.3e-13 49.6 0.6 7.8e-13 48.8 0.4 1.4 1 1 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|336253726|ref|YP_004596833.1| - 8.5e-07 29.0 0.8 3e-06 27.2 0.5 1.9 1 1 0 1 1 1 1 short chain dehydrogenase NmrA PF05368.8 gi|336253726|ref|YP_004596833.1| - 0.00012 21.4 0.1 0.00025 20.3 0.0 1.6 2 0 0 2 2 2 1 NmrA-like family Methyltransf_31 PF13847.1 gi|336253726|ref|YP_004596833.1| - 0.0014 18.2 0.0 0.027 14.0 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain TrkA_N PF02254.13 gi|336253726|ref|YP_004596833.1| - 0.01 15.7 1.3 0.061 13.3 0.1 2.4 2 1 0 2 2 2 0 TrkA-N domain DapB_N PF01113.15 gi|336253726|ref|YP_004596833.1| - 0.014 15.3 0.1 0.029 14.3 0.0 1.7 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus KR PF08659.5 gi|336253726|ref|YP_004596833.1| - 0.02 14.5 1.1 0.34 10.5 0.4 2.8 2 1 0 2 2 2 0 KR domain Epimerase_Csub PF13950.1 gi|336253726|ref|YP_004596833.1| - 0.18 11.7 0.0 0.33 10.9 0.0 1.4 1 0 0 1 1 1 0 UDP-glucose 4-epimerase C-term subunit Bac_transf PF02397.11 gi|336253727|ref|YP_004596834.1| - 4.2e-61 205.3 0.0 7.2e-61 204.5 0.0 1.3 1 0 0 1 1 1 1 Bacterial sugar transferase DUF4330 PF14221.1 gi|336253728|ref|YP_004596835.1| - 2.1e-25 89.5 6.9 3.6e-11 43.1 0.0 3.7 2 1 1 3 3 3 2 Domain of unknown function (DUF4330) CBM_11 PF03425.8 gi|336253728|ref|YP_004596835.1| - 0.0045 16.6 0.4 0.022 14.4 0.0 2.0 2 0 0 2 2 2 1 Carbohydrate binding domain (family 11) IncA PF04156.9 gi|336253729|ref|YP_004596836.1| - 0.0033 17.0 0.1 0.096 12.2 0.0 2.1 2 0 0 2 2 2 2 IncA protein BacA PF02673.13 gi|336253730|ref|YP_004596837.1| - 5.1e-49 166.7 15.0 6.4e-49 166.4 10.4 1.0 1 0 0 1 1 1 1 Bacitracin resistance protein BacA STT3 PF02516.9 gi|336253732|ref|YP_004596839.1| - 0.89 8.4 22.0 3.1 6.6 15.3 1.9 1 1 0 1 1 1 0 Oligosaccharyl transferase STT3 subunit Cadherin_pro PF08758.6 gi|336253733|ref|YP_004596840.1| - 0.073 12.8 0.2 0.26 11.0 0.1 1.9 1 0 0 1 1 1 0 Cadherin prodomain like STT3 PF02516.9 gi|336253734|ref|YP_004596841.1| - 4.1e-23 82.1 20.1 1.6e-22 80.2 13.9 1.9 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit Glycos_transf_2 PF00535.21 gi|336253735|ref|YP_004596842.1| - 8.8e-26 90.5 0.1 1.2e-25 90.1 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|336253735|ref|YP_004596842.1| - 1.5e-17 64.1 0.8 2.1e-17 63.7 0.5 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|336253735|ref|YP_004596842.1| - 1.4e-09 37.4 0.2 6.1e-07 28.7 0.0 2.1 2 0 0 2 2 2 2 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|336253735|ref|YP_004596842.1| - 1.7e-06 27.8 0.0 1.7e-06 27.8 0.0 1.5 2 0 0 2 2 2 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.1 gi|336253735|ref|YP_004596842.1| - 0.036 13.3 0.0 0.07 12.4 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 21 Glyco_trans_1_4 PF13692.1 gi|336253736|ref|YP_004596843.1| - 1.2e-16 61.0 0.3 6e-16 58.8 0.1 2.1 2 1 1 3 3 3 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.15 gi|336253736|ref|YP_004596843.1| - 2.7e-08 33.4 0.0 5.1e-08 32.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|336253736|ref|YP_004596843.1| - 0.0012 19.0 2.7 0.0014 18.8 0.3 2.2 1 1 1 2 2 2 1 Glycosyl transferase 4-like domain B12-binding PF02310.14 gi|336253736|ref|YP_004596843.1| - 0.066 13.0 0.2 2.6 7.9 0.0 2.8 2 1 1 3 3 3 0 B12 binding domain Sulfatase PF00884.18 gi|336253737|ref|YP_004596844.1| - 3.1e-43 148.1 0.6 6.5e-43 147.0 0.2 1.6 2 0 0 2 2 2 1 Sulfatase Sulfatase_C PF14707.1 gi|336253737|ref|YP_004596844.1| - 0.0033 17.7 0.1 0.008 16.4 0.0 1.6 1 0 0 1 1 1 1 C-terminal region of aryl-sulfatase Metalloenzyme PF01676.13 gi|336253737|ref|YP_004596844.1| - 0.026 13.9 0.0 0.11 11.9 0.0 1.9 2 0 0 2 2 2 0 Metalloenzyme superfamily FtsA PF14450.1 gi|336253737|ref|YP_004596844.1| - 0.063 13.1 0.0 0.13 12.1 0.0 1.6 2 0 0 2 2 2 0 Cell division protein FtsA Glycos_transf_2 PF00535.21 gi|336253738|ref|YP_004596845.1| - 1.2e-35 122.7 0.1 1.7e-35 122.2 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|336253738|ref|YP_004596845.1| - 1.3e-24 87.3 0.5 1.7e-24 86.8 0.3 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|336253738|ref|YP_004596845.1| - 1.2e-10 40.9 0.0 1.6e-10 40.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 TPR_16 PF13432.1 gi|336253738|ref|YP_004596845.1| - 0.064 13.9 2.4 0.21 12.3 1.6 1.9 1 0 0 1 1 1 0 Tetratricopeptide repeat EGF_CA PF07645.10 gi|336253738|ref|YP_004596845.1| - 0.18 11.8 0.0 0.37 10.8 0.0 1.4 1 0 0 1 1 1 0 Calcium-binding EGF domain TPR_14 PF13428.1 gi|336253738|ref|YP_004596845.1| - 2.5 8.9 5.6 2.2 9.1 2.0 2.4 2 0 0 2 2 2 0 Tetratricopeptide repeat PALP PF00291.20 gi|336253739|ref|YP_004596846.1| - 1.4e-58 198.5 0.1 1.6e-58 198.3 0.1 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme CbiG_N PF11760.3 gi|336253739|ref|YP_004596846.1| - 0.087 12.5 0.1 0.76 9.5 0.0 2.2 2 0 0 2 2 2 0 Cobalamin synthesis G N-terminal GATase_7 PF13537.1 gi|336253740|ref|YP_004596847.1| - 5e-09 35.9 0.0 1.5e-08 34.4 0.0 1.8 2 0 0 2 2 2 1 Glutamine amidotransferase domain Asn_synthase PF00733.16 gi|336253740|ref|YP_004596847.1| - 4.1e-08 33.0 0.0 1.7e-07 31.0 0.0 1.9 1 1 0 1 1 1 1 Asparagine synthase GATase_6 PF13522.1 gi|336253740|ref|YP_004596847.1| - 3.8e-05 23.6 0.0 0.00099 19.0 0.0 2.3 2 0 0 2 2 2 1 Glutamine amidotransferase domain Methyltransf_21 PF05050.7 gi|336253741|ref|YP_004596848.1| - 3.1e-24 85.8 0.0 4.9e-24 85.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase FkbM domain Methyltransf_18 PF12847.2 gi|336253741|ref|YP_004596848.1| - 7.9e-07 29.6 0.0 1.5e-06 28.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain V_cholerae_RfbT PF05575.6 gi|336253741|ref|YP_004596848.1| - 1.2e-05 24.4 0.0 3.2e-05 23.1 0.0 1.5 1 1 0 1 1 1 1 Vibrio cholerae RfbT protein Methyltransf_4 PF02390.12 gi|336253741|ref|YP_004596848.1| - 0.12 11.3 0.0 0.21 10.5 0.0 1.4 1 1 0 1 1 1 0 Putative methyltransferase Polysacc_synt_3 PF13440.1 gi|336253742|ref|YP_004596849.1| - 7.7e-20 71.4 29.3 7.7e-20 71.4 20.3 2.9 2 1 1 3 3 3 2 Polysaccharide biosynthesis protein Polysacc_synt PF01943.12 gi|336253742|ref|YP_004596849.1| - 8.4e-20 71.1 20.7 8.4e-20 71.1 14.4 2.3 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|336253742|ref|YP_004596849.1| - 7e-18 64.8 15.2 7e-18 64.8 10.5 3.5 3 1 0 3 3 3 1 Polysaccharide biosynthesis C-terminal domain MVIN PF03023.9 gi|336253742|ref|YP_004596849.1| - 1.9e-06 26.5 18.8 1.9e-06 26.5 13.0 3.1 2 1 0 2 2 2 1 MviN-like protein NTP_transferase PF00483.18 gi|336253743|ref|YP_004596850.1| - 2.3e-40 138.4 0.0 2.7e-40 138.2 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|336253743|ref|YP_004596850.1| - 1.2e-14 54.6 0.0 1.5e-14 54.4 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|336253743|ref|YP_004596850.1| - 5.6e-07 29.3 0.0 4.4e-06 26.3 0.0 2.0 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Glycos_transf_2 PF00535.21 gi|336253743|ref|YP_004596850.1| - 0.0031 17.2 0.0 0.0042 16.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 TrmB PF01978.14 gi|336253744|ref|YP_004596851.1| - 6.5e-20 70.6 0.0 1.2e-19 69.7 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|336253744|ref|YP_004596851.1| - 0.0037 16.8 0.0 0.0068 15.9 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|336253744|ref|YP_004596851.1| - 0.041 13.5 0.1 0.21 11.2 0.0 2.1 2 0 0 2 2 2 0 MarR family Rrf2 PF02082.15 gi|336253744|ref|YP_004596851.1| - 0.043 13.9 0.0 0.078 13.1 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator HTH_20 PF12840.2 gi|336253744|ref|YP_004596851.1| - 0.06 13.1 0.1 0.15 11.8 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_27 PF13463.1 gi|336253744|ref|YP_004596851.1| - 0.062 13.6 0.0 0.15 12.4 0.0 1.7 2 0 0 2 2 2 0 Winged helix DNA-binding domain DUF2250 PF10007.4 gi|336253744|ref|YP_004596851.1| - 0.12 12.3 0.0 0.18 11.7 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_9 PF08221.6 gi|336253744|ref|YP_004596851.1| - 0.16 11.8 0.0 0.3 10.9 0.0 1.4 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain Epimerase PF01370.16 gi|336253745|ref|YP_004596852.1| - 2.8e-37 128.4 0.0 3.9e-37 127.9 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|336253745|ref|YP_004596852.1| - 5.8e-26 91.0 0.0 7.2e-26 90.7 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|336253745|ref|YP_004596852.1| - 8.3e-21 73.9 0.0 2e-20 72.6 0.0 1.7 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|336253745|ref|YP_004596852.1| - 4.5e-16 58.5 0.0 2.9e-15 55.9 0.0 2.2 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|336253745|ref|YP_004596852.1| - 8.9e-11 41.1 0.0 3.1e-07 29.5 0.0 2.2 2 0 0 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.1 gi|336253745|ref|YP_004596852.1| - 1e-10 41.9 0.0 4.6e-10 39.8 0.0 2.0 1 1 0 1 1 1 1 NADH(P)-binding NmrA PF05368.8 gi|336253745|ref|YP_004596852.1| - 4.2e-05 22.9 0.2 0.00033 20.0 0.0 2.4 2 1 0 3 3 3 1 NmrA-like family Semialdhyde_dh PF01118.19 gi|336253745|ref|YP_004596852.1| - 0.00011 22.5 0.1 0.00075 19.8 0.0 2.1 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain adh_short PF00106.20 gi|336253745|ref|YP_004596852.1| - 0.00058 19.8 0.2 0.0014 18.5 0.2 1.7 1 1 0 1 1 1 1 short chain dehydrogenase Epimerase_Csub PF13950.1 gi|336253745|ref|YP_004596852.1| - 0.00084 19.2 0.0 0.0017 18.2 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose 4-epimerase C-term subunit DapB_N PF01113.15 gi|336253745|ref|YP_004596852.1| - 0.0022 17.9 0.2 0.0057 16.5 0.0 1.8 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus Calsequestrin PF01216.12 gi|336253745|ref|YP_004596852.1| - 0.0061 15.3 0.2 0.0095 14.7 0.1 1.2 1 0 0 1 1 1 1 Calsequestrin TrkA_N PF02254.13 gi|336253745|ref|YP_004596852.1| - 0.008 16.1 0.6 1.8 8.5 0.0 2.2 2 0 0 2 2 2 1 TrkA-N domain Ldh_1_N PF00056.18 gi|336253745|ref|YP_004596852.1| - 0.011 15.5 0.0 0.02 14.7 0.0 1.3 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain Saccharop_dh PF03435.13 gi|336253745|ref|YP_004596852.1| - 0.013 14.4 0.1 0.02 13.8 0.0 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase Epimerase PF01370.16 gi|336253746|ref|YP_004596853.1| - 1.5e-49 168.6 0.0 1.8e-49 168.3 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|336253746|ref|YP_004596853.1| - 3.1e-27 95.0 0.0 3.9e-27 94.6 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|336253746|ref|YP_004596853.1| - 2.1e-15 56.3 0.0 2.6e-15 56.0 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.1 gi|336253746|ref|YP_004596853.1| - 1.5e-14 54.3 0.1 2.1e-14 53.9 0.0 1.2 1 0 0 1 1 1 1 NADH(P)-binding NAD_binding_4 PF07993.7 gi|336253746|ref|YP_004596853.1| - 9.4e-13 47.6 0.0 1.1e-08 34.3 0.0 2.2 2 0 0 2 2 2 2 Male sterility protein Polysacc_synt_2 PF02719.10 gi|336253746|ref|YP_004596853.1| - 1.1e-11 44.2 0.0 1.7e-11 43.5 0.0 1.5 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein adh_short PF00106.20 gi|336253746|ref|YP_004596853.1| - 2.4e-09 37.3 0.4 4.5e-09 36.4 0.3 1.3 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|336253746|ref|YP_004596853.1| - 0.00025 20.7 0.2 0.00057 19.6 0.1 1.6 1 1 0 1 1 1 1 KR domain Saccharop_dh PF03435.13 gi|336253746|ref|YP_004596853.1| - 0.00069 18.6 0.1 0.0011 17.9 0.0 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase Ldh_1_N PF00056.18 gi|336253746|ref|YP_004596853.1| - 0.028 14.2 0.1 0.041 13.7 0.0 1.3 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain NmrA PF05368.8 gi|336253746|ref|YP_004596853.1| - 0.051 12.8 0.0 1.3 8.2 0.0 2.5 1 1 0 1 1 1 0 NmrA-like family Semialdhyde_dh PF01118.19 gi|336253746|ref|YP_004596853.1| - 0.093 13.0 0.0 0.21 11.9 0.0 1.8 1 1 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain Epimerase PF01370.16 gi|336253747|ref|YP_004596854.1| - 2.4e-22 79.5 0.0 4e-22 78.8 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family adh_short PF00106.20 gi|336253747|ref|YP_004596854.1| - 3e-07 30.5 0.1 5.3e-07 29.7 0.0 1.4 1 0 0 1 1 1 1 short chain dehydrogenase RmlD_sub_bind PF04321.12 gi|336253747|ref|YP_004596854.1| - 5.5e-06 25.4 0.1 0.013 14.3 0.3 3.0 2 1 0 2 2 2 2 RmlD substrate binding domain KR PF08659.5 gi|336253747|ref|YP_004596854.1| - 0.0001 22.0 0.0 0.00016 21.3 0.0 1.3 1 0 0 1 1 1 1 KR domain Polysacc_synt_2 PF02719.10 gi|336253747|ref|YP_004596854.1| - 0.00033 19.6 0.0 0.0018 17.2 0.0 2.1 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.14 gi|336253747|ref|YP_004596854.1| - 0.074 11.7 0.2 0.2 10.3 0.0 1.7 2 1 0 2 2 2 0 3-beta hydroxysteroid dehydrogenase/isomerase family Glycos_transf_2 PF00535.21 gi|336253749|ref|YP_004596856.1| - 1.3e-24 86.8 0.0 1.9e-24 86.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|336253749|ref|YP_004596856.1| - 4.4e-19 69.1 0.0 6.5e-19 68.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|336253749|ref|YP_004596856.1| - 2.5e-09 36.6 0.0 6.6e-08 31.9 0.0 2.0 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|336253749|ref|YP_004596856.1| - 3.6e-07 30.0 0.0 5.3e-07 29.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.1 gi|336253749|ref|YP_004596856.1| - 0.00054 19.2 0.0 0.0011 18.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_transf_64 PF09258.5 gi|336253749|ref|YP_004596856.1| - 0.1 11.7 0.0 0.14 11.2 0.0 1.2 1 0 0 1 1 1 0 Glycosyl transferase family 64 domain Sulfatase PF00884.18 gi|336253750|ref|YP_004596857.1| - 2.6e-23 82.6 0.2 6.2e-23 81.4 0.1 1.6 1 1 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|336253750|ref|YP_004596857.1| - 8.7e-09 35.1 6.3 4.7e-07 29.4 4.4 2.2 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Epimerase PF01370.16 gi|336253751|ref|YP_004596858.1| - 5.7e-62 209.2 0.0 7e-62 208.9 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|336253751|ref|YP_004596858.1| - 8.5e-32 109.9 0.0 1e-31 109.7 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|336253751|ref|YP_004596858.1| - 2.3e-17 62.8 0.0 1.5e-16 60.1 0.0 1.8 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.12 gi|336253751|ref|YP_004596858.1| - 3.3e-13 49.1 0.0 4.3e-13 48.7 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.7 gi|336253751|ref|YP_004596858.1| - 7e-13 48.0 0.0 2.3e-11 43.0 0.0 2.1 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.1 gi|336253751|ref|YP_004596858.1| - 1.4e-12 48.0 0.1 1.9e-12 47.5 0.1 1.2 1 0 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|336253751|ref|YP_004596858.1| - 1.6e-10 41.1 1.5 3e-10 40.2 1.0 1.4 1 0 0 1 1 1 1 short chain dehydrogenase NmrA PF05368.8 gi|336253751|ref|YP_004596858.1| - 8.8e-07 28.4 0.1 1.7e-06 27.4 0.1 1.5 1 0 0 1 1 1 1 NmrA-like family KR PF08659.5 gi|336253751|ref|YP_004596858.1| - 0.00017 21.3 2.2 0.00046 19.9 1.5 1.6 1 1 0 1 1 1 1 KR domain Epimerase_Csub PF13950.1 gi|336253751|ref|YP_004596858.1| - 0.0014 18.5 0.0 0.0024 17.7 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose 4-epimerase C-term subunit TrkA_N PF02254.13 gi|336253751|ref|YP_004596858.1| - 0.0014 18.5 0.0 0.0031 17.5 0.0 1.6 1 0 0 1 1 1 1 TrkA-N domain Glycos_transf_1 PF00534.15 gi|336253752|ref|YP_004596859.1| - 1.8e-32 112.1 0.0 2.7e-32 111.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|336253752|ref|YP_004596859.1| - 2.7e-19 69.6 0.0 1e-18 67.8 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|336253752|ref|YP_004596859.1| - 6.7e-09 35.9 0.0 1.4e-08 34.8 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|336253752|ref|YP_004596859.1| - 0.0044 17.1 1.5 0.0064 16.6 0.3 1.8 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Sulfatase PF00884.18 gi|336253753|ref|YP_004596860.1| - 1.6e-31 109.6 0.0 2.5e-31 109.0 0.0 1.3 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|336253753|ref|YP_004596860.1| - 1.6e-16 60.6 1.1 3.1e-15 56.3 0.8 2.1 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase DUF229 PF02995.12 gi|336253753|ref|YP_004596860.1| - 3.2e-05 22.5 0.0 7.7e-05 21.2 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF229) DUF1501 PF07394.7 gi|336253753|ref|YP_004596860.1| - 0.0043 15.9 0.0 0.0071 15.2 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1501) Metalloenzyme PF01676.13 gi|336253753|ref|YP_004596860.1| - 0.0069 15.8 0.0 0.095 12.0 0.0 2.4 2 1 1 3 3 3 1 Metalloenzyme superfamily DUF3974 PF13120.1 gi|336253753|ref|YP_004596860.1| - 0.16 11.8 0.0 0.31 10.8 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3974) Hexapep PF00132.19 gi|336253754|ref|YP_004596861.1| - 2.9e-14 51.8 5.2 6.2e-11 41.3 1.5 3.9 4 0 0 4 4 4 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|336253754|ref|YP_004596861.1| - 6.8e-09 35.1 15.1 1.1e-08 34.4 2.3 3.3 4 1 0 4 4 4 2 Hexapeptide repeat of succinyl-transferase Capsule_synth PF05159.9 gi|336253755|ref|YP_004596862.1| - 4e-21 75.6 0.1 7.9e-21 74.7 0.0 1.5 2 0 0 2 2 2 1 Capsule polysaccharide biosynthesis protein Epimerase_2 PF02350.14 gi|336253755|ref|YP_004596862.1| - 0.03 13.0 0.0 0.054 12.2 0.0 1.3 1 0 0 1 1 1 0 UDP-N-acetylglucosamine 2-epimerase PHP_C PF13263.1 gi|336253755|ref|YP_004596862.1| - 0.1 12.1 0.1 1.5 8.3 0.0 2.8 2 0 0 2 2 2 0 PHP-associated CTP_transf_3 PF02348.14 gi|336253756|ref|YP_004596863.1| - 9e-17 61.4 0.0 1.2e-16 61.0 0.0 1.1 1 0 0 1 1 1 1 Cytidylyltransferase NTP_transf_3 PF12804.2 gi|336253756|ref|YP_004596863.1| - 9e-11 42.1 0.0 1.3e-10 41.5 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain DUF2064 PF09837.4 gi|336253756|ref|YP_004596863.1| - 0.066 12.8 0.0 0.1 12.2 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2064) rve PF00665.21 gi|336253756|ref|YP_004596863.1| - 0.12 12.4 0.0 3.2 7.8 0.0 2.4 1 1 0 1 1 1 0 Integrase core domain FAA_hydrolase PF01557.13 gi|336253757|ref|YP_004596864.1| - 8.7e-33 113.6 0.1 1e-32 113.4 0.1 1.0 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family Glyco_trans_1_3 PF13528.1 gi|336253758|ref|YP_004596865.1| - 7.9e-09 35.1 0.0 2.2e-06 27.1 0.0 2.1 2 0 0 2 2 2 2 Glycosyl transferase family 1 Glyco_trans_1_4 PF13692.1 gi|336253758|ref|YP_004596865.1| - 0.001 19.2 0.2 0.0034 17.5 0.1 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_tran_28_C PF04101.11 gi|336253758|ref|YP_004596865.1| - 0.084 12.5 0.0 0.12 12.0 0.0 1.2 1 0 0 1 1 1 0 Glycosyltransferase family 28 C-terminal domain Glyco_trans_1_2 PF13524.1 gi|336253758|ref|YP_004596865.1| - 1.8 8.8 4.7 0.69 10.2 0.1 2.6 3 1 0 3 3 3 0 Glycosyl transferases group 1 Formyl_trans_N PF00551.14 gi|336253759|ref|YP_004596866.1| - 1e-21 77.2 0.0 1.5e-21 76.7 0.0 1.1 1 0 0 1 1 1 1 Formyl transferase Med5 PF08689.5 gi|336253759|ref|YP_004596866.1| - 0.057 11.1 0.0 0.076 10.6 0.0 1.0 1 0 0 1 1 1 0 Mediator complex subunit Med5 vWF_A PF12450.3 gi|336253759|ref|YP_004596866.1| - 0.14 11.9 0.0 0.22 11.2 0.0 1.3 1 0 0 1 1 1 0 von Willebrand factor NeuB PF03102.9 gi|336253760|ref|YP_004596867.1| - 1.9e-85 285.8 0.0 2.3e-85 285.6 0.0 1.0 1 0 0 1 1 1 1 NeuB family SAF PF08666.7 gi|336253760|ref|YP_004596867.1| - 4.2e-11 43.0 0.2 1.2e-10 41.6 0.1 1.9 2 0 0 2 2 2 1 SAF domain Glyco_hydro_97 PF10566.4 gi|336253760|ref|YP_004596867.1| - 0.062 12.3 0.1 0.09 11.8 0.0 1.2 1 0 0 1 1 1 0 Glycoside hydrolase 97 PHP_C PF13263.1 gi|336253760|ref|YP_004596867.1| - 0.094 12.2 0.1 0.22 11.0 0.1 1.6 1 0 0 1 1 1 0 PHP-associated HupH_C PF04809.8 gi|336253760|ref|YP_004596867.1| - 0.098 12.4 0.0 0.29 10.9 0.0 1.8 2 0 0 2 2 2 0 HupH hydrogenase expression protein, C-terminal conserved region DegT_DnrJ_EryC1 PF01041.12 gi|336253761|ref|YP_004596868.1| - 7.6e-121 403.5 0.0 8.6e-121 403.3 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|336253761|ref|YP_004596868.1| - 2.1e-10 40.2 0.0 3.9e-10 39.3 0.0 1.4 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.16 gi|336253761|ref|YP_004596868.1| - 1.8e-08 33.7 0.0 8.6e-08 31.5 0.0 1.9 2 0 0 2 2 2 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|336253761|ref|YP_004596868.1| - 3.8e-07 29.1 0.0 4.9e-07 28.8 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|336253761|ref|YP_004596868.1| - 5.2e-07 28.2 0.0 7e-07 27.8 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme OKR_DC_1 PF01276.15 gi|336253761|ref|YP_004596868.1| - 0.012 14.1 0.0 0.019 13.5 0.0 1.4 1 1 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain Epimerase PF01370.16 gi|336253762|ref|YP_004596869.1| - 2e-55 187.8 0.0 2.4e-55 187.5 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|336253762|ref|YP_004596869.1| - 4.4e-21 74.8 0.0 6.3e-21 74.3 0.0 1.3 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|336253762|ref|YP_004596869.1| - 3.3e-18 65.5 0.0 4.5e-18 65.1 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.7 gi|336253762|ref|YP_004596869.1| - 3.9e-16 58.7 0.0 5.2e-15 55.0 0.0 2.0 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.1 gi|336253762|ref|YP_004596869.1| - 1.1e-13 51.6 0.0 5.8e-13 49.2 0.0 2.0 1 1 0 1 1 1 1 NADH(P)-binding Polysacc_synt_2 PF02719.10 gi|336253762|ref|YP_004596869.1| - 6.5e-10 38.3 0.0 6.9e-09 35.0 0.0 2.1 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein adh_short PF00106.20 gi|336253762|ref|YP_004596869.1| - 3.4e-05 23.8 0.1 3.4e-05 23.8 0.0 1.9 3 0 0 3 3 3 1 short chain dehydrogenase NmrA PF05368.8 gi|336253762|ref|YP_004596869.1| - 0.001 18.3 0.0 0.0034 16.6 0.0 1.7 2 0 0 2 2 2 1 NmrA-like family Epimerase_Csub PF13950.1 gi|336253762|ref|YP_004596869.1| - 0.0085 16.0 0.0 0.02 14.8 0.0 1.6 1 0 0 1 1 1 1 UDP-glucose 4-epimerase C-term subunit KR PF08659.5 gi|336253762|ref|YP_004596869.1| - 0.05 13.2 0.8 0.27 10.8 0.1 2.3 2 1 0 2 2 2 0 KR domain Polysacc_synt_2 PF02719.10 gi|336253763|ref|YP_004596870.1| - 6.2e-90 301.0 0.0 7.4e-90 300.7 0.0 1.0 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.14 gi|336253763|ref|YP_004596870.1| - 7.6e-23 80.5 0.0 1.2e-22 79.9 0.0 1.4 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Epimerase PF01370.16 gi|336253763|ref|YP_004596870.1| - 1.1e-22 80.6 0.0 1.3e-21 77.1 0.0 2.1 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|336253763|ref|YP_004596870.1| - 1.4e-15 56.9 0.0 2.5e-14 52.8 0.0 2.1 1 1 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.1 gi|336253763|ref|YP_004596870.1| - 1.1e-09 38.6 0.1 1.9e-09 37.8 0.1 1.5 1 0 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|336253763|ref|YP_004596870.1| - 3.3e-09 36.8 0.0 6.3e-09 35.9 0.0 1.4 1 0 0 1 1 1 1 short chain dehydrogenase NAD_binding_4 PF07993.7 gi|336253763|ref|YP_004596870.1| - 5.7e-09 35.2 0.1 1.8e-06 27.0 0.1 3.0 1 1 1 2 2 2 2 Male sterility protein NmrA PF05368.8 gi|336253763|ref|YP_004596870.1| - 3.7e-06 26.3 0.0 6.8e-06 25.4 0.0 1.4 1 0 0 1 1 1 1 NmrA-like family Saccharop_dh PF03435.13 gi|336253763|ref|YP_004596870.1| - 0.00011 21.3 0.0 0.00016 20.7 0.0 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase TrkA_N PF02254.13 gi|336253763|ref|YP_004596870.1| - 0.0003 20.7 0.1 0.0011 18.8 0.0 2.1 2 1 1 3 3 3 1 TrkA-N domain Methyltransf_25 PF13649.1 gi|336253763|ref|YP_004596870.1| - 0.00072 19.8 0.0 0.0081 16.5 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain Ldh_1_N PF00056.18 gi|336253763|ref|YP_004596870.1| - 0.012 15.3 0.1 0.022 14.5 0.0 1.5 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|336253763|ref|YP_004596870.1| - 0.076 13.4 0.0 0.25 11.7 0.0 1.9 2 0 0 2 2 1 0 NADP oxidoreductase coenzyme F420-dependent KR PF08659.5 gi|336253763|ref|YP_004596870.1| - 0.11 12.0 0.0 0.21 11.2 0.0 1.5 1 0 0 1 1 1 0 KR domain ABC_tran PF00005.22 gi|336253764|ref|YP_004596871.1| - 1.2e-33 116.2 0.0 2.1e-33 115.5 0.0 1.4 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.18 gi|336253764|ref|YP_004596871.1| - 8.6e-10 38.4 9.2 1.4e-09 37.7 6.4 1.3 1 0 0 1 1 1 1 ABC transporter transmembrane region SMC_N PF02463.14 gi|336253764|ref|YP_004596871.1| - 3.9e-08 32.8 0.1 2.2e-06 27.0 0.0 2.4 3 0 0 3 3 3 1 RecF/RecN/SMC N terminal domain AAA_17 PF13207.1 gi|336253764|ref|YP_004596871.1| - 3.9e-06 27.6 0.2 2.7e-05 24.9 0.1 2.5 2 1 0 2 2 2 1 AAA domain DUF258 PF03193.11 gi|336253764|ref|YP_004596871.1| - 2.6e-05 23.4 0.0 6.3e-05 22.2 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function, DUF258 AAA_21 PF13304.1 gi|336253764|ref|YP_004596871.1| - 9.8e-05 22.4 0.0 0.02 14.8 0.0 2.4 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|336253764|ref|YP_004596871.1| - 0.0004 19.8 0.0 0.00091 18.7 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|336253764|ref|YP_004596871.1| - 0.0026 17.7 0.6 0.0071 16.3 0.2 2.1 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|336253764|ref|YP_004596871.1| - 0.0044 17.1 0.1 0.03 14.4 0.1 2.2 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|336253764|ref|YP_004596871.1| - 0.017 14.7 0.2 0.17 11.4 0.0 2.4 3 0 0 3 3 3 0 AAA domain AAA_25 PF13481.1 gi|336253764|ref|YP_004596871.1| - 0.022 14.1 0.1 0.064 12.6 0.1 1.9 1 1 0 1 1 1 0 AAA domain ABC_ATPase PF09818.4 gi|336253764|ref|YP_004596871.1| - 0.045 12.3 0.1 0.081 11.4 0.0 1.3 1 0 0 1 1 1 0 Predicted ATPase of the ABC class AAA_18 PF13238.1 gi|336253764|ref|YP_004596871.1| - 0.079 13.2 0.0 0.22 11.8 0.0 1.8 1 0 0 1 1 1 0 AAA domain Reticulon PF02453.12 gi|336253764|ref|YP_004596871.1| - 0.23 11.0 4.9 0.31 10.6 0.0 2.5 2 1 0 2 2 2 0 Reticulon SIS PF01380.17 gi|336253765|ref|YP_004596872.1| - 5.1e-36 123.1 0.1 5e-19 68.2 0.1 2.4 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.1 gi|336253765|ref|YP_004596872.1| - 4.3e-25 88.2 0.1 8.8e-25 87.2 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.1 gi|336253765|ref|YP_004596872.1| - 6.7e-21 74.3 0.0 1.1e-20 73.5 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|336253765|ref|YP_004596872.1| - 1.2e-16 60.3 0.0 2.7e-14 52.6 0.0 2.4 1 1 1 2 2 2 2 Glutamine amidotransferases class-II GATase_4 PF13230.1 gi|336253765|ref|YP_004596872.1| - 0.00098 17.8 0.0 0.0019 16.9 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferases class-II NTP_transferase PF00483.18 gi|336253766|ref|YP_004596873.1| - 1.4e-45 155.5 0.0 2e-45 155.0 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|336253766|ref|YP_004596873.1| - 2.4e-18 66.7 0.1 3.4e-18 66.2 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.19 gi|336253766|ref|YP_004596873.1| - 6.2e-16 57.0 27.3 6.9e-09 34.8 2.8 3.6 2 1 1 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|336253766|ref|YP_004596873.1| - 3.7e-09 36.0 24.9 1e-05 24.9 2.0 4.2 3 1 0 3 3 3 3 Hexapeptide repeat of succinyl-transferase IspD PF01128.14 gi|336253766|ref|YP_004596873.1| - 7.4e-08 32.1 0.9 7.4e-08 32.1 0.7 1.8 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Epimerase PF01370.16 gi|336253767|ref|YP_004596874.1| - 4.4e-63 212.8 0.0 6.9e-63 212.2 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|336253767|ref|YP_004596874.1| - 3.5e-22 78.4 0.0 4.4e-22 78.0 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|336253767|ref|YP_004596874.1| - 4.4e-21 75.0 0.0 5.8e-21 74.6 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.10 gi|336253767|ref|YP_004596874.1| - 1.4e-15 56.9 0.0 6.6e-15 54.7 0.0 1.8 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|336253767|ref|YP_004596874.1| - 3.6e-12 45.7 0.3 1.2e-11 43.9 0.2 1.8 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.1 gi|336253767|ref|YP_004596874.1| - 7.2e-10 39.1 0.0 2.2e-09 37.6 0.0 1.9 1 1 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|336253767|ref|YP_004596874.1| - 3.4e-07 30.3 0.0 9.2e-07 28.9 0.0 1.7 2 0 0 2 2 2 1 short chain dehydrogenase NmrA PF05368.8 gi|336253767|ref|YP_004596874.1| - 8.7e-05 21.8 0.0 0.00017 20.9 0.0 1.6 1 1 0 1 1 1 1 NmrA-like family KR PF08659.5 gi|336253767|ref|YP_004596874.1| - 0.0011 18.7 0.0 0.003 17.2 0.0 1.7 2 1 0 2 2 2 1 KR domain DapB_N PF01113.15 gi|336253767|ref|YP_004596874.1| - 0.016 15.1 2.3 2.5 8.0 0.2 2.8 2 1 0 2 2 2 0 Dihydrodipicolinate reductase, N-terminus NTP_transferase PF00483.18 gi|336253768|ref|YP_004596875.1| - 5.4e-43 147.0 0.0 6e-43 146.9 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|336253768|ref|YP_004596875.1| - 2.9e-15 56.7 0.0 3.3e-15 56.5 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|336253768|ref|YP_004596875.1| - 1.9e-06 27.6 0.0 9.6e-06 25.2 0.0 1.9 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Epimerase PF01370.16 gi|336253770|ref|YP_004596877.1| - 1.2e-44 152.5 0.4 1.5e-44 152.1 0.3 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|336253770|ref|YP_004596877.1| - 1.1e-12 47.4 0.2 1.6e-12 46.9 0.1 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|336253770|ref|YP_004596877.1| - 2.2e-12 46.2 0.5 5.4e-12 45.0 0.3 1.7 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.7 gi|336253770|ref|YP_004596877.1| - 3.4e-11 42.5 0.0 3.3e-08 32.7 0.0 2.1 2 0 0 2 2 2 2 Male sterility protein Polysacc_synt_2 PF02719.10 gi|336253770|ref|YP_004596877.1| - 4.6e-09 35.6 0.1 4.4e-06 25.8 0.0 2.2 2 0 0 2 2 2 2 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.1 gi|336253770|ref|YP_004596877.1| - 8.8e-06 25.8 0.4 1.3e-05 25.2 0.3 1.5 1 1 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|336253770|ref|YP_004596877.1| - 2.4e-05 24.3 1.6 0.056 13.3 0.0 3.1 2 1 1 3 3 3 2 short chain dehydrogenase KR PF08659.5 gi|336253770|ref|YP_004596877.1| - 0.026 14.1 0.4 1.4 8.5 0.0 2.6 3 0 0 3 3 3 0 KR domain UDPG_MGDP_dh_N PF03721.9 gi|336253771|ref|YP_004596878.1| - 9.4e-52 175.0 0.2 3.9e-51 173.0 0.0 1.9 1 1 1 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.14 gi|336253771|ref|YP_004596878.1| - 2.5e-31 107.7 0.0 4.5e-31 106.9 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.10 gi|336253771|ref|YP_004596878.1| - 5e-26 90.9 0.0 1.4e-25 89.4 0.0 1.8 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_Gly3P_dh_N PF01210.18 gi|336253771|ref|YP_004596878.1| - 9e-08 32.0 0.1 7.1e-07 29.0 0.0 2.4 3 0 0 3 3 3 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.11 gi|336253771|ref|YP_004596878.1| - 1e-05 25.0 0.0 2.7e-05 23.6 0.0 1.7 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.13 gi|336253771|ref|YP_004596878.1| - 1.4e-05 24.8 0.1 2.8e-05 23.8 0.1 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox PF00070.22 gi|336253771|ref|YP_004596878.1| - 7.7e-05 23.0 0.7 0.0014 19.0 0.1 3.0 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase F420_oxidored PF03807.12 gi|336253771|ref|YP_004596878.1| - 0.0014 19.0 0.8 0.73 10.3 0.0 3.9 3 1 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent DUF3320 PF11784.3 gi|336253771|ref|YP_004596878.1| - 0.007 15.8 0.2 0.029 13.9 0.2 2.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3320) AlaDh_PNT_C PF01262.16 gi|336253771|ref|YP_004596878.1| - 0.0072 15.8 0.1 0.023 14.2 0.0 1.8 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain TrkA_N PF02254.13 gi|336253771|ref|YP_004596878.1| - 0.013 15.5 4.1 0.051 13.5 0.2 3.3 3 1 0 3 3 3 0 TrkA-N domain ThiF PF00899.16 gi|336253771|ref|YP_004596878.1| - 0.02 14.7 0.1 0.087 12.6 0.1 2.1 2 0 0 2 2 2 0 ThiF family NAD_binding_8 PF13450.1 gi|336253771|ref|YP_004596878.1| - 0.024 14.6 0.1 0.085 12.8 0.1 2.0 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain NAD_binding_2 PF03446.10 gi|336253771|ref|YP_004596878.1| - 0.034 13.9 0.4 0.16 11.8 0.0 2.3 2 1 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase ThiS PF02597.15 gi|336253771|ref|YP_004596878.1| - 0.044 14.2 0.1 3.1 8.3 0.0 3.4 3 0 0 3 3 3 0 ThiS family Methyltransf_18 PF12847.2 gi|336253771|ref|YP_004596878.1| - 0.094 13.3 1.4 0.36 11.4 0.1 2.5 3 0 0 3 3 3 0 Methyltransferase domain 2-Hacid_dh_C PF02826.14 gi|336253771|ref|YP_004596878.1| - 0.11 11.6 0.1 0.55 9.3 0.0 2.1 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DAO PF01266.19 gi|336253771|ref|YP_004596878.1| - 0.21 10.4 6.1 0.052 12.4 1.9 1.9 2 2 1 3 3 3 0 FAD dependent oxidoreductase NAD_binding_10 PF13460.1 gi|336253771|ref|YP_004596878.1| - 8.6 6.3 8.1 24 4.8 1.3 3.5 3 1 0 3 3 3 0 NADH(P)-binding Glycos_transf_2 PF00535.21 gi|336253772|ref|YP_004596879.1| - 4.7e-20 71.9 0.1 6.6e-20 71.4 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|336253772|ref|YP_004596879.1| - 5.9e-13 49.1 0.0 8.2e-13 48.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|336253772|ref|YP_004596879.1| - 0.002 18.3 0.0 0.0041 17.4 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase family 2 CobD_Cbib PF03186.8 gi|336253772|ref|YP_004596879.1| - 0.0024 16.9 0.0 0.0035 16.4 0.0 1.2 1 0 0 1 1 1 1 CobD/Cbib protein UPF0060 PF02694.10 gi|336253772|ref|YP_004596879.1| - 0.0053 16.7 1.8 0.0088 16.0 1.3 1.3 1 0 0 1 1 1 1 Uncharacterised BCR, YnfA/UPF0060 family MR_MLE PF01188.16 gi|336253772|ref|YP_004596879.1| - 0.022 15.2 0.1 0.048 14.2 0.1 1.5 1 0 0 1 1 1 0 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CoA_binding_2 PF13380.1 gi|336253772|ref|YP_004596879.1| - 0.096 12.8 0.0 0.22 11.6 0.0 1.6 1 0 0 1 1 1 0 CoA binding domain CBS PF00571.23 gi|336253772|ref|YP_004596879.1| - 0.099 12.4 0.0 0.23 11.2 0.0 1.6 1 0 0 1 1 1 0 CBS domain RHH_1 PF01402.16 gi|336253774|ref|YP_004596881.1| - 0.0002 21.0 0.2 0.00082 19.1 0.0 1.8 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family GvpK PF05121.7 gi|336253774|ref|YP_004596881.1| - 0.023 14.5 0.1 0.032 14.0 0.1 1.2 1 0 0 1 1 1 0 Gas vesicle protein K SHOCT PF09851.4 gi|336253774|ref|YP_004596881.1| - 0.044 13.2 2.6 0.07 12.6 1.8 1.4 1 0 0 1 1 1 0 Short C-terminal domain PG_binding_2 PF08823.6 gi|336253774|ref|YP_004596881.1| - 0.069 13.2 0.1 0.16 12.0 0.1 1.6 2 0 0 2 2 2 0 Putative peptidoglycan binding domain Glyoxalase_2 PF12681.2 gi|336253777|ref|YP_004596884.1| - 4.4e-20 72.2 2.0 6.6e-09 36.3 0.1 2.1 2 0 0 2 2 2 2 Glyoxalase-like domain Glyoxalase PF00903.20 gi|336253777|ref|YP_004596884.1| - 3.1e-10 40.1 0.1 3.4e-06 27.0 0.0 3.0 2 1 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DUF892 PF05974.7 gi|336253778|ref|YP_004596885.1| - 2.4e-41 141.1 5.3 2.9e-41 140.9 3.7 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF892) Ferritin PF00210.19 gi|336253778|ref|YP_004596885.1| - 0.022 14.4 8.7 0.028 14.1 5.3 1.7 1 1 1 2 2 2 0 Ferritin-like domain TBPIP PF07106.8 gi|336253778|ref|YP_004596885.1| - 0.027 14.0 1.5 0.038 13.5 0.3 1.7 2 0 0 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Toxin_52 PF15605.1 gi|336253778|ref|YP_004596885.1| - 0.027 14.3 0.2 0.096 12.5 0.0 1.9 2 0 0 2 2 2 0 Putative toxin 52 DUF4142 PF13628.1 gi|336253778|ref|YP_004596885.1| - 0.05 13.6 4.4 0.33 10.9 0.2 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF4142) DUF2383 PF09537.5 gi|336253778|ref|YP_004596885.1| - 0.064 13.4 1.1 0.85 9.8 0.3 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF2383) DUF3603 PF12227.3 gi|336253778|ref|YP_004596885.1| - 0.082 12.0 0.1 0.16 11.0 0.0 1.5 1 1 1 2 2 2 0 Protein of unknown function (DUF3603) DUF904 PF06005.7 gi|336253778|ref|YP_004596885.1| - 0.13 12.5 0.4 0.13 12.5 0.2 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF904) ApoO PF09769.4 gi|336253778|ref|YP_004596885.1| - 0.16 11.6 0.1 0.22 11.2 0.0 1.2 1 0 0 1 1 1 0 Apolipoprotein O Vir_act_alpha_C PF10400.4 gi|336253778|ref|YP_004596885.1| - 0.17 12.3 1.5 14 6.1 0.0 2.4 2 0 0 2 2 2 0 Virulence activator alpha C-term DUF4546 PF15079.1 gi|336253778|ref|YP_004596885.1| - 0.18 10.9 2.9 0.28 10.2 2.0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4546) Phasin PF05597.6 gi|336253778|ref|YP_004596885.1| - 0.19 11.4 1.8 0.23 11.2 0.1 1.9 2 1 0 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) DUF4404 PF14357.1 gi|336253778|ref|YP_004596885.1| - 0.46 10.9 9.0 0.38 11.1 3.2 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF4404) DUF4618 PF15397.1 gi|336253778|ref|YP_004596885.1| - 0.92 8.7 6.3 0.25 10.6 0.6 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4618) Hemerythrin PF01814.18 gi|336253778|ref|YP_004596885.1| - 2 8.5 7.6 8.9 6.4 5.2 2.0 1 1 1 2 2 2 0 Hemerythrin HHE cation binding domain MgtE_N PF03448.12 gi|336253778|ref|YP_004596885.1| - 6.9 7.0 10.2 4.1 7.7 1.3 3.1 2 2 1 3 3 3 0 MgtE intracellular N domain UbiA PF01040.13 gi|336253779|ref|YP_004596886.1| - 0.00053 19.2 1.1 0.00062 19.0 0.8 1.0 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF2892 PF11127.3 gi|336253779|ref|YP_004596886.1| - 0.052 13.3 0.9 0.057 13.2 0.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2892) MerC PF03203.9 gi|336253779|ref|YP_004596886.1| - 0.08 13.3 0.1 0.087 13.2 0.1 1.1 1 0 0 1 1 1 0 MerC mercury resistance protein DUF4131 PF13567.1 gi|336253779|ref|YP_004596886.1| - 0.14 11.5 2.5 0.16 11.3 1.7 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) Ferritin PF00210.19 gi|336253781|ref|YP_004596888.1| - 9.2e-23 80.5 0.3 1e-22 80.4 0.2 1.0 1 0 0 1 1 1 1 Ferritin-like domain Rubrerythrin PF02915.12 gi|336253781|ref|YP_004596888.1| - 1e-09 38.8 0.1 1.2e-09 38.6 0.1 1.0 1 0 0 1 1 1 1 Rubrerythrin DUF4439 PF14530.1 gi|336253781|ref|YP_004596888.1| - 8.7e-05 23.0 0.2 0.00013 22.4 0.1 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4439) DUF2383 PF09537.5 gi|336253781|ref|YP_004596888.1| - 0.00048 20.3 1.2 0.78 10.0 0.1 2.3 2 1 0 2 2 2 2 Domain of unknown function (DUF2383) Ferritin_2 PF13668.1 gi|336253781|ref|YP_004596888.1| - 0.00079 19.3 0.0 0.0011 18.9 0.0 1.3 1 1 0 1 1 1 1 Ferritin-like domain DUF892 PF05974.7 gi|336253781|ref|YP_004596888.1| - 0.0012 18.6 2.3 0.0046 16.7 1.6 1.9 1 1 0 1 1 1 1 Domain of unknown function (DUF892) Ferritin-like PF12902.2 gi|336253781|ref|YP_004596888.1| - 0.0043 16.6 0.0 0.0052 16.4 0.0 1.1 1 0 0 1 1 1 1 Ferritin-like GatB_Yqey PF02637.13 gi|336253781|ref|YP_004596888.1| - 0.022 14.4 0.2 0.056 13.1 0.1 1.8 1 1 0 1 1 1 0 GatB domain HMGL-like PF00682.14 gi|336253782|ref|YP_004596889.1| - 2.8e-69 233.3 4.8 3.9e-69 232.9 3.4 1.2 1 0 0 1 1 1 1 HMGL-like AP_endonuc_2 PF01261.19 gi|336253782|ref|YP_004596889.1| - 0.008 15.4 0.3 0.04 13.2 0.0 2.1 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel Asp_protease PF09668.5 gi|336253782|ref|YP_004596889.1| - 0.11 12.0 0.1 0.23 11.0 0.0 1.5 1 0 0 1 1 1 0 Aspartyl protease TPP_enzyme_N PF02776.13 gi|336253783|ref|YP_004596890.1| - 3.5e-54 182.8 0.8 1e-53 181.3 0.3 2.0 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|336253783|ref|YP_004596890.1| - 4.4e-50 169.2 2.1 7.1e-50 168.5 0.0 2.4 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|336253783|ref|YP_004596890.1| - 3.5e-42 143.4 0.5 1.3e-41 141.5 0.0 2.2 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, central domain CO_dh PF02552.11 gi|336253783|ref|YP_004596890.1| - 0.0015 18.1 0.0 0.0027 17.3 0.0 1.3 1 0 0 1 1 1 1 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit ALS_ss_C PF10369.4 gi|336253784|ref|YP_004596891.1| - 2.2e-21 75.3 0.2 3.5e-21 74.6 0.1 1.3 1 0 0 1 1 1 1 Small subunit of acetolactate synthase ACT_5 PF13710.1 gi|336253784|ref|YP_004596891.1| - 2.3e-16 59.3 0.0 1e-15 57.2 0.0 1.9 2 0 0 2 2 2 1 ACT domain ACT PF01842.20 gi|336253784|ref|YP_004596891.1| - 1.5e-13 49.9 0.0 3.3e-13 48.7 0.0 1.6 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.1 gi|336253784|ref|YP_004596891.1| - 0.0043 17.3 0.0 0.0082 16.4 0.0 1.4 1 0 0 1 1 1 1 ACT domain SbcD_C PF12320.3 gi|336253784|ref|YP_004596891.1| - 0.1 12.6 0.1 1.4 8.9 0.0 2.2 2 0 0 2 2 2 0 Type 5 capsule protein repressor C-terminal domain IlvN PF07991.7 gi|336253785|ref|YP_004596892.1| - 4.3e-70 234.3 0.0 6.6e-70 233.7 0.0 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain IlvC PF01450.14 gi|336253785|ref|YP_004596892.1| - 5.2e-56 188.5 0.2 7.1e-56 188.1 0.1 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain 2-Hacid_dh_C PF02826.14 gi|336253785|ref|YP_004596892.1| - 1.8e-05 23.9 0.0 3.3e-05 23.1 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|336253785|ref|YP_004596892.1| - 3.2e-05 23.8 0.0 5.5e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|336253785|ref|YP_004596892.1| - 3.5e-05 24.1 0.0 7.4e-05 23.1 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.11 gi|336253785|ref|YP_004596892.1| - 0.0011 18.3 0.1 0.0022 17.4 0.1 1.5 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Aconitase PF00330.15 gi|336253787|ref|YP_004596894.1| - 7.3e-148 492.8 0.0 8.2e-148 492.7 0.0 1.0 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) DUF521 PF04412.8 gi|336253787|ref|YP_004596894.1| - 0.0046 15.5 0.0 0.0077 14.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF521) Aconitase_C PF00694.14 gi|336253788|ref|YP_004596895.1| - 1.9e-21 76.5 0.0 3e-21 75.9 0.0 1.3 1 0 0 1 1 1 1 Aconitase C-terminal domain BACON PF13004.2 gi|336253788|ref|YP_004596895.1| - 0.18 12.0 1.2 0.32 11.2 0.8 1.4 1 0 0 1 1 1 0 Bacteroidetes-Associated Carbohydrate-binding Often N-terminal VWA_2 PF13519.1 gi|336253789|ref|YP_004596896.1| - 5.9e-23 81.8 0.7 1.1e-22 80.8 0.5 1.5 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA PF00092.23 gi|336253789|ref|YP_004596896.1| - 3.7e-16 59.3 0.2 5.9e-16 58.7 0.1 1.3 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_3 PF13768.1 gi|336253789|ref|YP_004596896.1| - 5.9e-11 42.3 0.6 1.7e-09 37.5 0.0 2.2 2 0 0 2 2 2 1 von Willebrand factor type A domain vWA-TerF-like PF10138.4 gi|336253789|ref|YP_004596896.1| - 0.00014 21.7 0.6 0.16 11.7 0.1 2.2 2 0 0 2 2 2 2 vWA found in TerF C terminus VWA_CoxE PF05762.9 gi|336253789|ref|YP_004596896.1| - 0.02 14.0 0.9 0.26 10.3 0.1 2.2 1 1 1 2 2 2 0 VWA domain containing CoxE-like protein Peptidase_S8 PF00082.17 gi|336253790|ref|YP_004596897.1| - 3.5e-45 154.3 2.8 5.5e-45 153.6 2.0 1.3 1 0 0 1 1 1 1 Subtilase family CarboxypepD_reg PF13620.1 gi|336253790|ref|YP_004596897.1| - 3e-32 110.5 23.7 1.4e-17 63.5 2.2 3.8 3 0 0 3 3 3 3 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|336253790|ref|YP_004596897.1| - 2.9e-19 68.9 0.2 1.3e-10 41.2 0.0 3.3 2 1 1 3 3 3 3 Domain of unknown function (DUF4480) PEGA PF08308.6 gi|336253790|ref|YP_004596897.1| - 3.3e-07 29.9 1.8 0.0064 16.2 0.1 3.7 4 0 0 4 4 4 2 PEGA domain MG1 PF11974.3 gi|336253790|ref|YP_004596897.1| - 1.2e-05 25.7 5.4 0.0013 19.2 0.2 3.2 2 0 0 2 2 2 2 Alpha-2-macroglobulin MG1 domain Cna_B PF05738.8 gi|336253790|ref|YP_004596897.1| - 1.4e-05 24.7 7.9 0.0011 18.6 0.3 3.5 4 0 0 4 4 4 2 Cna protein B-type domain DUF824 PF05688.6 gi|336253790|ref|YP_004596897.1| - 0.069 12.8 4.0 0.79 9.4 0.1 3.1 3 0 0 3 3 3 0 Salmonella repeat of unknown function (DUF824) Iso_dh PF00180.15 gi|336253791|ref|YP_004596898.1| - 1.3e-89 300.5 0.0 1.6e-89 300.2 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Glyco_hydro_3 PF00933.16 gi|336253792|ref|YP_004596899.1| - 1.4e-84 283.6 0.0 2.1e-84 283.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain Glyco_hydro_3_C PF01915.17 gi|336253792|ref|YP_004596899.1| - 1.2e-62 211.4 0.5 7.6e-62 208.7 0.4 2.1 1 1 0 1 1 1 1 Glycosyl hydrolase family 3 C-terminal domain Fn3-like PF14310.1 gi|336253792|ref|YP_004596899.1| - 2e-18 66.1 0.1 3.9e-18 65.1 0.1 1.5 1 0 0 1 1 1 1 Fibronectin type III-like domain TP_methylase PF00590.15 gi|336253793|ref|YP_004596900.1| - 3.6e-21 75.8 1.4 4.4e-21 75.5 1.0 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Ribonuc_L-PSP PF01042.16 gi|336253794|ref|YP_004596901.1| - 1.2e-28 99.3 0.1 1.3e-28 99.1 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP Rieske PF00355.21 gi|336253795|ref|YP_004596902.1| - 2.1e-07 30.4 0.1 2.7e-07 30.0 0.1 1.2 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Met_10 PF02475.11 gi|336253796|ref|YP_004596903.1| - 9.5e-57 191.8 0.0 1.3e-56 191.4 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_26 PF13659.1 gi|336253796|ref|YP_004596903.1| - 4.5e-10 39.5 0.8 1.2e-08 34.9 0.1 2.3 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|336253796|ref|YP_004596903.1| - 1.7e-08 35.0 0.1 1.6e-07 31.9 0.0 2.3 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|336253796|ref|YP_004596903.1| - 2.3e-07 30.5 0.0 3.3e-07 30.0 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_31 PF13847.1 gi|336253796|ref|YP_004596903.1| - 9.7e-07 28.4 0.0 1.7e-06 27.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|336253796|ref|YP_004596903.1| - 9.2e-05 21.8 0.0 0.00024 20.5 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase small domain UPF0020 PF01170.13 gi|336253796|ref|YP_004596903.1| - 0.00034 20.2 0.0 0.00064 19.3 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_23 PF13489.1 gi|336253796|ref|YP_004596903.1| - 0.00035 20.3 0.0 0.00096 18.9 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|336253796|ref|YP_004596903.1| - 0.00036 20.9 0.0 0.0012 19.3 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain PrmA PF06325.8 gi|336253796|ref|YP_004596903.1| - 0.0004 19.6 0.0 0.00063 18.9 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_25 PF13649.1 gi|336253796|ref|YP_004596903.1| - 0.00079 19.7 0.0 0.002 18.4 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|336253796|ref|YP_004596903.1| - 0.0057 16.0 0.0 0.013 14.8 0.0 1.6 2 0 0 2 2 2 1 Conserved hypothetical protein 95 Methyltransf_12 PF08242.7 gi|336253796|ref|YP_004596903.1| - 0.09 13.2 0.0 0.26 11.7 0.0 1.9 2 0 0 2 2 2 0 Methyltransferase domain DNA_methylase PF00145.12 gi|336253796|ref|YP_004596903.1| - 0.12 11.4 0.0 0.18 10.9 0.0 1.2 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase CbiQ PF02361.11 gi|336253797|ref|YP_004596904.1| - 3.4e-17 62.7 7.0 6.5e-17 61.8 4.9 1.4 1 1 0 1 1 1 1 Cobalt transport protein ABC_tran PF00005.22 gi|336253798|ref|YP_004596905.1| - 4.5e-30 104.7 0.0 5.9e-30 104.3 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|336253798|ref|YP_004596905.1| - 1e-09 38.7 0.0 0.00028 20.9 0.0 2.1 2 0 0 2 2 2 2 AAA domain SbcCD_C PF13558.1 gi|336253798|ref|YP_004596905.1| - 4.1e-05 23.4 0.2 0.00034 20.4 0.1 2.1 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_15 PF13175.1 gi|336253798|ref|YP_004596905.1| - 5.5e-05 22.3 0.0 0.13 11.2 0.0 2.0 2 0 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.14 gi|336253798|ref|YP_004596905.1| - 0.00011 21.5 0.0 0.00063 19.0 0.0 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|336253798|ref|YP_004596905.1| - 0.0002 20.8 0.1 0.00037 19.9 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|336253798|ref|YP_004596905.1| - 0.0019 18.5 0.0 0.0027 18.0 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|336253798|ref|YP_004596905.1| - 0.0024 17.8 2.1 0.0082 16.1 1.5 2.0 1 1 0 1 1 1 1 AAA ATPase domain Zeta_toxin PF06414.7 gi|336253798|ref|YP_004596905.1| - 0.0076 15.3 0.0 0.013 14.6 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin AAA_25 PF13481.1 gi|336253798|ref|YP_004596905.1| - 0.01 15.2 1.8 0.045 13.1 1.2 2.1 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|336253798|ref|YP_004596905.1| - 0.012 15.0 0.0 1.2 8.5 0.0 2.1 1 1 1 2 2 2 0 AAA-like domain AAA_22 PF13401.1 gi|336253798|ref|YP_004596905.1| - 0.012 15.6 0.1 0.026 14.6 0.1 1.8 1 1 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|336253798|ref|YP_004596905.1| - 0.013 14.4 0.1 0.07 12.0 0.0 2.1 2 0 0 2 2 2 0 Type II/IV secretion system protein UPF0079 PF02367.12 gi|336253798|ref|YP_004596905.1| - 0.015 14.8 0.0 0.025 14.2 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 NACHT PF05729.7 gi|336253798|ref|YP_004596905.1| - 0.02 14.5 0.1 0.033 13.8 0.0 1.3 1 0 0 1 1 1 0 NACHT domain cobW PF02492.14 gi|336253798|ref|YP_004596905.1| - 0.03 13.7 0.2 0.055 12.9 0.1 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_28 PF13521.1 gi|336253798|ref|YP_004596905.1| - 0.031 14.2 0.0 0.069 13.1 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|336253798|ref|YP_004596905.1| - 0.036 13.6 0.0 0.072 12.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|336253798|ref|YP_004596905.1| - 0.051 13.4 0.6 0.089 12.6 0.4 1.9 1 1 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|336253798|ref|YP_004596905.1| - 0.066 12.9 0.0 0.1 12.2 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase MutS_V PF00488.16 gi|336253798|ref|YP_004596905.1| - 0.098 12.0 0.0 0.18 11.2 0.0 1.3 1 0 0 1 1 1 0 MutS domain V Mg_chelatase PF01078.16 gi|336253798|ref|YP_004596905.1| - 0.11 11.6 0.0 0.17 10.9 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_5 PF07728.9 gi|336253798|ref|YP_004596905.1| - 0.12 12.0 0.1 0.36 10.5 0.0 1.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) DUF3584 PF12128.3 gi|336253798|ref|YP_004596905.1| - 0.13 9.5 0.0 0.17 9.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) DUF258 PF03193.11 gi|336253798|ref|YP_004596905.1| - 0.17 11.0 0.0 0.26 10.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_19 PF13245.1 gi|336253798|ref|YP_004596905.1| - 0.26 11.0 6.7 0.19 11.4 0.9 3.0 2 2 0 2 2 2 0 Part of AAA domain BioY PF02632.9 gi|336253799|ref|YP_004596906.1| - 2.6e-41 140.7 20.7 4.2e-41 140.0 14.4 1.3 1 0 0 1 1 1 1 BioY family DUF3816 PF12822.2 gi|336253799|ref|YP_004596906.1| - 0.019 14.8 20.0 0.037 13.9 13.9 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3816) DUF2269 PF10027.4 gi|336253799|ref|YP_004596906.1| - 0.023 14.4 3.4 0.023 14.4 2.3 2.4 1 1 0 2 2 2 0 Predicted integral membrane protein (DUF2269) ECF-ribofla_trS PF07155.7 gi|336253799|ref|YP_004596906.1| - 6.4 6.4 20.9 1.5e+02 2.0 14.5 2.3 1 1 0 1 1 1 0 ECF-type riboflavin transporter, S component CARDB PF07705.6 gi|336253800|ref|YP_004596907.1| - 1.5e-06 28.2 3.7 7.2e-06 25.9 1.4 3.1 2 0 0 2 2 2 1 CARDB EMP24_GP25L PF01105.19 gi|336253800|ref|YP_004596907.1| - 0.0003 20.5 0.4 9.4 5.9 0.1 4.4 4 0 0 4 4 4 3 emp24/gp25L/p24 family/GOLD Apocytochr_F_C PF01333.14 gi|336253801|ref|YP_004596908.1| - 0.15 11.9 0.2 0.2 11.4 0.1 1.2 1 0 0 1 1 1 0 Apocytochrome F, C-terminal RHH_1 PF01402.16 gi|336253802|ref|YP_004596909.1| - 0.048 13.5 3.2 0.17 11.8 0.9 2.0 1 1 1 2 2 2 0 Ribbon-helix-helix protein, copG family DUF217 PF02697.9 gi|336253802|ref|YP_004596909.1| - 0.061 13.5 0.4 0.061 13.5 0.3 1.0 1 0 0 1 1 1 0 Uncharacterized ACR, COG1753 Chorion_3 PF05387.6 gi|336253803|ref|YP_004596910.1| - 0.084 12.3 5.3 0.089 12.2 3.7 1.1 1 0 0 1 1 1 0 Chorion family 3 Hexapep PF00132.19 gi|336253804|ref|YP_004596911.1| - 2.4e-19 67.8 4.5 1.5e-07 30.5 0.2 3.5 2 1 1 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|336253804|ref|YP_004596911.1| - 8.1e-07 28.4 6.1 7.8e-06 25.3 0.3 3.0 2 1 1 3 3 3 2 Hexapeptide repeat of succinyl-transferase Lactamase_B PF00753.22 gi|336253805|ref|YP_004596912.1| - 2.3e-13 50.2 6.9 2.3e-13 50.2 4.8 2.2 3 1 0 3 3 3 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|336253805|ref|YP_004596912.1| - 8.2e-05 22.2 0.4 0.00012 21.6 0.3 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|336253805|ref|YP_004596912.1| - 0.051 13.2 2.2 0.14 11.8 0.1 2.2 2 0 0 2 2 2 0 Beta-lactamase superfamily domain OsmC PF02566.14 gi|336253806|ref|YP_004596913.1| - 3.7e-11 43.0 0.0 4.8e-11 42.7 0.0 1.2 1 0 0 1 1 1 1 OsmC-like protein DUF2271 PF10029.4 gi|336253806|ref|YP_004596913.1| - 0.05 13.1 0.0 0.079 12.4 0.0 1.3 1 0 0 1 1 1 0 Predicted periplasmic protein (DUF2271) DUF457 PF04307.9 gi|336253807|ref|YP_004596914.1| - 1.6e-13 50.3 12.4 2e-13 49.9 8.6 1.1 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) Voltage_CLC PF00654.15 gi|336253807|ref|YP_004596914.1| - 0.0059 15.6 3.3 0.0072 15.3 2.3 1.2 1 0 0 1 1 1 1 Voltage gated chloride channel Lactamase_B_3 PF13483.1 gi|336253808|ref|YP_004596915.1| - 3.2e-19 69.2 0.7 4.5e-19 68.7 0.5 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|336253808|ref|YP_004596915.1| - 2.4e-11 43.5 0.4 3.3e-11 43.1 0.3 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|336253808|ref|YP_004596915.1| - 1.9e-08 34.1 7.3 2.5e-08 33.7 4.9 1.6 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily tRNA_anti-codon PF01336.20 gi|336253809|ref|YP_004596916.1| - 0.064 13.1 0.1 0.12 12.2 0.1 1.7 1 1 0 1 1 1 0 OB-fold nucleic acid binding domain tRNA_anti-codon PF01336.20 gi|336253810|ref|YP_004596917.1| - 1.8e-11 43.7 0.1 4.7e-11 42.3 0.0 1.8 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain S1 PF00575.18 gi|336253810|ref|YP_004596917.1| - 6.3e-10 39.0 1.2 1.5e-09 37.7 0.0 2.4 3 0 0 3 3 3 1 S1 RNA binding domain BOF PF04076.8 gi|336253810|ref|YP_004596917.1| - 0.002 17.9 0.3 0.0059 16.4 0.1 1.9 2 0 0 2 2 2 1 Bacterial OB fold (BOF) protein tRNA_anti_2 PF13742.1 gi|336253810|ref|YP_004596917.1| - 0.0036 17.1 0.0 0.0076 16.1 0.0 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain Lin-8 PF03353.10 gi|336253810|ref|YP_004596917.1| - 0.13 11.4 1.2 0.24 10.6 0.8 1.3 1 0 0 1 1 1 0 Ras-mediated vulval-induction antagonist SHOCT PF09851.4 gi|336253811|ref|YP_004596918.1| - 2.4e-09 36.3 3.9 4.4e-09 35.5 2.7 1.5 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.6 gi|336253811|ref|YP_004596918.1| - 4.9e-06 26.1 6.9 1e-05 25.1 4.8 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1707) GvpG PF05120.7 gi|336253811|ref|YP_004596918.1| - 0.014 15.2 0.8 0.014 15.2 0.6 1.6 2 0 0 2 2 2 0 Gas vesicle protein G PepSY_TM PF03929.11 gi|336253811|ref|YP_004596918.1| - 0.044 14.1 0.0 0.097 13.0 0.0 1.6 1 0 0 1 1 1 0 PepSY-associated TM helix PhaG_MnhG_YufB PF03334.9 gi|336253812|ref|YP_004596919.1| - 3.4e-25 87.8 6.5 4.3e-25 87.5 4.5 1.1 1 0 0 1 1 1 1 Na+/H+ antiporter subunit MrpF_PhaF PF04066.8 gi|336253813|ref|YP_004596920.1| - 4.9e-17 61.9 5.1 4.9e-17 61.9 3.5 1.7 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) DUF4013 PF13197.1 gi|336253813|ref|YP_004596920.1| - 0.74 9.1 7.8 2.1 7.6 5.4 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF4013) DUF4006 PF13179.1 gi|336253813|ref|YP_004596920.1| - 3 7.4 6.2 2.7 7.6 3.0 1.8 1 1 1 2 2 2 0 Family of unknown function (DUF4006) MNHE PF01899.11 gi|336253814|ref|YP_004596921.1| - 6.4e-38 129.8 0.3 7.5e-38 129.6 0.2 1.0 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit Oxidored_q1 PF00361.15 gi|336253815|ref|YP_004596922.1| - 1.9e-47 161.8 12.2 6.6e-25 87.8 1.8 2.5 1 1 1 2 2 2 2 NADH-Ubiquinone/plastoquinone (complex I), various chains NADHdeh_related PF10125.4 gi|336253815|ref|YP_004596922.1| - 0.0006 19.0 21.6 0.00067 18.8 1.9 3.0 3 1 0 3 3 3 2 NADH dehydrogenase I, subunit N related protein Oxidored_q2 PF00420.19 gi|336253816|ref|YP_004596923.1| - 1.4e-25 88.7 1.1 1.7e-25 88.4 0.7 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF998 PF06197.8 gi|336253816|ref|YP_004596923.1| - 0.25 10.6 13.3 0.61 9.3 9.3 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF998) BPD_transp_2 PF02653.11 gi|336253816|ref|YP_004596923.1| - 5.2 5.9 10.7 9.5 5.0 7.4 1.5 1 1 0 1 1 1 0 Branched-chain amino acid transport system / permease component MnhB PF04039.8 gi|336253817|ref|YP_004596924.1| - 7.4e-24 84.1 13.1 4.9e-17 62.1 4.2 2.0 1 1 1 2 2 2 2 Domain related to MnhB subunit of Na+/H+ antiporter Oxidored_q1 PF00361.15 gi|336253818|ref|YP_004596925.1| - 1.7e-63 214.4 8.4 1.7e-63 214.4 5.8 2.8 3 0 0 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains DUF4040 PF13244.1 gi|336253818|ref|YP_004596925.1| - 1.2e-14 53.9 9.2 1.2e-14 53.9 6.4 5.1 5 1 1 6 6 6 1 Domain of unknown function (DUF4040) Oxidored_q1_N PF00662.15 gi|336253818|ref|YP_004596925.1| - 1.9e-10 40.1 0.3 6.3e-10 38.4 0.2 2.0 1 0 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Radical_SAM PF04055.16 gi|336253819|ref|YP_004596926.1| - 5.7e-24 85.1 0.1 7.2e-23 81.5 0.0 2.3 2 0 0 2 2 2 1 Radical SAM superfamily Acetyltransf_1 PF00583.19 gi|336253819|ref|YP_004596926.1| - 5.3e-10 39.1 0.1 1.6e-09 37.6 0.0 1.9 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family AF0941-like PF14591.1 gi|336253819|ref|YP_004596926.1| - 0.032 14.2 0.0 0.087 12.8 0.0 1.7 1 0 0 1 1 1 0 AF0941-like Acetyltransf_10 PF13673.1 gi|336253819|ref|YP_004596926.1| - 0.045 13.8 0.3 0.15 12.2 0.1 2.0 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain Glyco_hydro_43 PF04616.9 gi|336253820|ref|YP_004596927.1| - 1.3e-08 34.2 0.3 3.4e-08 32.9 0.2 1.7 1 1 0 1 1 1 1 Glycosyl hydrolases family 43 BNR_2 PF13088.1 gi|336253820|ref|YP_004596927.1| - 0.039 13.2 0.0 0.11 11.7 0.0 1.8 2 1 0 2 2 2 0 BNR repeat-like domain HpcH_HpaI PF03328.9 gi|336253822|ref|YP_004596929.1| - 2.7e-46 157.2 0.6 3.1e-46 157.0 0.4 1.0 1 0 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family DUF162 PF02589.10 gi|336253823|ref|YP_004596930.1| - 2.4e-26 92.4 0.4 2.9e-26 92.1 0.3 1.1 1 0 0 1 1 1 1 Uncharacterised ACR, YkgG family COG1556 Zip PF02535.17 gi|336253824|ref|YP_004596931.1| - 2.2e-20 72.9 13.8 3.4e-20 72.2 2.3 2.1 2 0 0 2 2 2 2 ZIP Zinc transporter FbpA PF05833.6 gi|336253827|ref|YP_004596934.1| - 3.6e-89 299.4 0.1 5.4e-89 298.8 0.1 1.2 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) DUF814 PF05670.8 gi|336253827|ref|YP_004596934.1| - 7.3e-26 89.8 0.0 1.3e-25 89.1 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF814) Laminin_I PF06008.9 gi|336253827|ref|YP_004596934.1| - 0.19 10.9 7.7 0.33 10.2 0.1 2.5 3 0 0 3 3 3 0 Laminin Domain I THOC7 PF05615.8 gi|336253827|ref|YP_004596934.1| - 3.7 7.8 10.8 14 5.9 0.5 2.5 2 0 0 2 2 2 0 Tho complex subunit 7 RE_NgoBV PF09564.5 gi|336253828|ref|YP_004596935.1| - 0.063 12.5 0.1 0.065 12.4 0.1 1.1 1 0 0 1 1 1 0 NgoBV restriction endonuclease MFS_1 PF07690.11 gi|336253829|ref|YP_004596936.1| - 8.2e-40 136.5 75.7 5.6e-31 107.5 31.4 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|336253829|ref|YP_004596936.1| - 0.22 9.8 44.2 0.054 11.8 24.2 2.7 1 1 2 3 3 3 0 MFS/sugar transport protein Cytochrom_B_N PF00033.14 gi|336253830|ref|YP_004596937.1| - 0.058 12.7 3.4 0.4 10.0 2.6 2.1 1 1 0 1 1 1 0 Cytochrome b(N-terminal)/b6/petB Colicin PF01024.14 gi|336253830|ref|YP_004596937.1| - 0.34 10.4 4.7 0.21 11.1 2.2 1.4 1 1 0 1 1 1 0 Colicin pore forming domain eRF1_1 PF03463.10 gi|336253831|ref|YP_004596938.1| - 1e-29 102.7 0.3 1.8e-29 101.9 0.2 1.3 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.10 gi|336253831|ref|YP_004596938.1| - 1.1e-23 83.6 0.5 3e-23 82.2 0.0 2.0 3 0 0 3 3 3 1 eRF1 domain 3 eRF1_2 PF03464.10 gi|336253831|ref|YP_004596938.1| - 7.2e-21 74.9 0.2 1.6e-20 73.7 0.1 1.6 1 0 0 1 1 1 1 eRF1 domain 2 Virul_fac_BrkB PF03631.10 gi|336253832|ref|YP_004596939.1| - 0.026 13.8 3.6 0.03 13.6 2.5 1.1 1 0 0 1 1 1 0 Virulence factor BrkB 2TM PF13239.1 gi|336253832|ref|YP_004596939.1| - 0.38 10.8 2.0 0.82 9.7 0.1 2.0 2 0 0 2 2 2 0 2TM domain TrmB PF01978.14 gi|336253833|ref|YP_004596940.1| - 7.6e-20 70.3 0.0 1.3e-19 69.6 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF2250 PF10007.4 gi|336253833|ref|YP_004596940.1| - 0.00026 20.8 0.0 0.00051 19.9 0.0 1.5 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) MarR_2 PF12802.2 gi|336253833|ref|YP_004596940.1| - 0.00053 19.6 0.0 0.0012 18.4 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|336253833|ref|YP_004596940.1| - 0.00057 19.4 0.0 0.00099 18.6 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain Penicillinase_R PF03965.11 gi|336253833|ref|YP_004596940.1| - 0.0062 16.6 0.1 0.017 15.2 0.0 1.8 2 0 0 2 2 2 1 Penicillinase repressor HTH_27 PF13463.1 gi|336253833|ref|YP_004596940.1| - 0.0088 16.3 0.0 0.028 14.7 0.0 1.9 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|336253833|ref|YP_004596940.1| - 0.018 14.8 0.0 0.042 13.6 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain MarR PF01047.17 gi|336253833|ref|YP_004596940.1| - 0.066 12.9 0.1 0.2 11.3 0.0 1.8 2 0 0 2 2 2 0 MarR family HTH_29 PF13551.1 gi|336253833|ref|YP_004596940.1| - 0.096 12.8 0.1 0.2 11.7 0.1 1.6 1 0 0 1 1 1 0 Winged helix-turn helix MMPL PF03176.10 gi|336253834|ref|YP_004596941.1| - 6.6e-29 100.6 44.7 1.7e-17 63.1 13.0 3.7 2 2 0 2 2 2 2 MMPL family Sterol-sensing PF12349.3 gi|336253834|ref|YP_004596941.1| - 2.2e-07 30.4 15.8 0.0014 18.1 3.0 2.4 2 0 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation Patched PF02460.13 gi|336253834|ref|YP_004596941.1| - 1.4e-05 23.3 34.1 0.00022 19.3 6.0 3.0 3 0 0 3 3 3 2 Patched family SecD_SecF PF02355.11 gi|336253834|ref|YP_004596941.1| - 0.00035 19.8 8.6 0.00035 19.8 6.0 2.5 2 0 0 2 2 2 1 Protein export membrane protein ACR_tran PF00873.14 gi|336253834|ref|YP_004596941.1| - 0.0058 14.1 24.8 0.0055 14.1 6.2 2.2 2 0 0 2 2 2 2 AcrB/AcrD/AcrF family Formyl_trans_N PF00551.14 gi|336253835|ref|YP_004596942.1| - 3.1e-09 36.6 0.0 4.3e-09 36.1 0.0 1.2 1 0 0 1 1 1 1 Formyl transferase Lactamase_B_2 PF12706.2 gi|336253836|ref|YP_004596943.1| - 4.2e-14 52.5 0.2 5e-14 52.2 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|336253836|ref|YP_004596943.1| - 4.9e-14 52.4 4.9 1.4e-13 50.8 3.4 1.8 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|336253836|ref|YP_004596943.1| - 0.0032 17.1 0.1 0.0057 16.3 0.0 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Bac_rhodopsin PF01036.13 gi|336253837|ref|YP_004596944.1| - 4.5e-58 196.1 23.2 5e-58 196.0 16.1 1.0 1 0 0 1 1 1 1 Bacteriorhodopsin-like protein MCPsignal PF00015.16 gi|336253838|ref|YP_004596945.1| - 2.8e-48 164.2 64.2 1.6e-45 155.2 24.8 3.3 2 1 1 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.20 gi|336253838|ref|YP_004596945.1| - 1.4e-11 44.3 6.4 9.4e-11 41.7 0.8 4.9 6 0 0 6 6 5 2 HAMP domain DUF948 PF06103.6 gi|336253838|ref|YP_004596945.1| - 1.4e-05 24.8 21.6 0.029 14.2 2.5 5.8 2 2 3 5 5 5 2 Bacterial protein of unknown function (DUF948) NPV_P10 PF05531.7 gi|336253838|ref|YP_004596945.1| - 0.00065 19.9 20.6 0.097 12.9 3.2 4.5 3 1 1 4 4 4 2 Nucleopolyhedrovirus P10 protein Spc7 PF08317.6 gi|336253838|ref|YP_004596945.1| - 0.021 13.5 23.3 0.024 13.3 2.3 3.3 3 0 0 3 3 3 0 Spc7 kinetochore protein V_ATPase_I PF01496.14 gi|336253838|ref|YP_004596945.1| - 0.042 11.7 26.8 0.02 12.7 3.3 2.2 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family Laminin_II PF06009.7 gi|336253838|ref|YP_004596945.1| - 0.066 12.9 30.9 0.37 10.5 1.6 5.2 3 2 2 5 5 5 0 Laminin Domain II Atg14 PF10186.4 gi|336253838|ref|YP_004596945.1| - 0.082 11.8 12.8 0.65 8.8 0.2 3.1 3 0 0 3 3 3 0 UV radiation resistance protein and autophagy-related subunit 14 DUF4200 PF13863.1 gi|336253838|ref|YP_004596945.1| - 0.25 11.3 32.8 0.049 13.5 8.4 3.4 3 1 0 3 3 3 0 Domain of unknown function (DUF4200) Rep_trans PF02486.14 gi|336253838|ref|YP_004596945.1| - 0.48 9.8 4.5 0.15 11.5 0.2 2.2 2 2 0 2 2 2 0 Replication initiation factor DUF489 PF04356.7 gi|336253838|ref|YP_004596945.1| - 0.67 9.5 7.7 1.7 8.1 0.4 3.6 2 2 2 4 4 4 0 Protein of unknown function (DUF489) Syntaxin-6_N PF09177.6 gi|336253838|ref|YP_004596945.1| - 2.9 8.3 28.8 0.11 12.8 2.9 4.6 3 2 1 4 4 4 0 Syntaxin 6, N-terminal DUF1664 PF07889.7 gi|336253838|ref|YP_004596945.1| - 3.2 7.5 28.0 0.22 11.2 1.1 5.1 2 2 2 5 5 5 0 Protein of unknown function (DUF1664) Fib_alpha PF08702.5 gi|336253838|ref|YP_004596945.1| - 3.8 7.6 16.8 8.9 6.4 1.8 4.1 2 1 1 4 4 4 0 Fibrinogen alpha/beta chain family DUF4201 PF13870.1 gi|336253838|ref|YP_004596945.1| - 4.4 6.7 11.5 7.4 5.9 3.5 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF4201) Prominin PF05478.6 gi|336253838|ref|YP_004596945.1| - 4.6 4.6 16.1 1.8 5.9 9.3 1.7 1 1 1 2 2 2 0 Prominin COG2 PF06148.6 gi|336253838|ref|YP_004596945.1| - 5.5 6.8 25.3 5.4 6.8 0.7 5.4 1 1 4 5 5 5 0 COG (conserved oligomeric Golgi) complex component, COG2 Clusterin PF01093.12 gi|336253838|ref|YP_004596945.1| - 6.4 5.4 14.4 8.8 5.0 3.3 3.0 3 0 0 3 3 3 0 Clusterin LOH1CR12 PF10158.4 gi|336253838|ref|YP_004596945.1| - 6.9 6.4 9.2 3.6 7.3 0.2 3.3 1 1 1 3 3 3 0 Tumour suppressor protein Seryl_tRNA_N PF02403.17 gi|336253838|ref|YP_004596945.1| - 10 6.2 35.6 4 7.4 0.8 5.1 3 2 3 6 6 6 0 Seryl-tRNA synthetase N-terminal domain Abi PF02517.11 gi|336253839|ref|YP_004596946.1| - 8.6e-11 41.8 7.7 8.6e-11 41.8 5.3 2.1 2 1 0 2 2 2 1 CAAX protease self-immunity Glycophorin_A PF01102.13 gi|336253839|ref|YP_004596946.1| - 0.35 10.6 1.2 0.69 9.6 0.1 2.0 3 0 0 3 3 3 0 Glycophorin A DUF161 PF02588.10 gi|336253839|ref|YP_004596946.1| - 0.41 10.9 0.1 0.41 10.9 0.1 2.3 2 1 0 2 2 2 0 Uncharacterized BCR, YitT family COG1284 DEAD_assoc PF08494.6 gi|336253840|ref|YP_004596947.1| - 3.9e-51 173.4 0.7 7.5e-51 172.5 0.5 1.5 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.24 gi|336253840|ref|YP_004596947.1| - 1.1e-29 103.1 0.0 9.6e-29 100.0 0.0 2.1 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|336253840|ref|YP_004596947.1| - 2.7e-15 56.0 0.0 2e-13 50.0 0.0 2.6 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|336253840|ref|YP_004596947.1| - 1.9e-08 34.3 0.0 4.4e-08 33.1 0.0 1.6 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_22 PF13401.1 gi|336253840|ref|YP_004596947.1| - 0.00029 20.9 0.1 0.0025 17.9 0.0 2.6 2 1 0 2 2 2 1 AAA domain UvrD-helicase PF00580.16 gi|336253840|ref|YP_004596947.1| - 0.077 12.2 0.0 3.1 6.9 0.0 2.4 2 0 0 2 2 2 0 UvrD/REP helicase N-terminal domain DUF457 PF04307.9 gi|336253841|ref|YP_004596948.1| - 0.016 14.5 3.2 0.025 13.8 2.2 1.4 1 1 0 1 1 1 0 Predicted membrane-bound metal-dependent hydrolase (DUF457) DUF420 PF04238.7 gi|336253841|ref|YP_004596948.1| - 0.084 12.8 0.6 0.18 11.7 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF420) AIRS_C PF02769.17 gi|336253842|ref|YP_004596949.1| - 2.5e-27 95.7 2.0 5e-27 94.7 1.4 1.5 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|336253842|ref|YP_004596949.1| - 7.1e-12 45.4 0.7 2.1e-11 43.9 0.5 1.8 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain PAP2 PF01569.16 gi|336253845|ref|YP_004596952.1| - 2.6e-20 72.3 3.3 2.6e-20 72.3 2.3 2.2 2 1 0 2 2 2 1 PAP2 superfamily PAP2_3 PF14378.1 gi|336253845|ref|YP_004596952.1| - 0.0013 18.2 5.8 0.0013 18.2 4.0 2.4 2 1 0 2 2 2 1 PAP2 superfamily PAP2_C PF14360.1 gi|336253845|ref|YP_004596952.1| - 0.083 13.1 0.0 0.46 10.7 0.0 2.1 2 0 0 2 2 2 0 PAP2 superfamily C-terminal CoA_transf_3 PF02515.12 gi|336253846|ref|YP_004596953.1| - 1.2e-67 226.8 0.1 2.1e-67 226.1 0.0 1.4 1 0 0 1 1 1 1 CoA-transferase family III Aldedh PF00171.17 gi|336253847|ref|YP_004596954.1| - 7.9e-19 67.3 0.2 2e-17 62.6 0.1 2.0 2 0 0 2 2 2 2 Aldehyde dehydrogenase family TctA PF01970.11 gi|336253848|ref|YP_004596955.1| - 7.2e-129 429.8 39.8 9.2e-129 429.5 27.6 1.1 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family TctB PF07331.6 gi|336253849|ref|YP_004596956.1| - 7.8e-13 48.2 10.0 3e-12 46.3 7.0 1.8 1 1 0 1 1 1 1 Tripartite tricarboxylate transporter TctB family FA_desaturase PF00487.19 gi|336253849|ref|YP_004596956.1| - 2.1 7.7 5.8 24 4.2 0.0 2.1 2 0 0 2 2 2 0 Fatty acid desaturase TctC PF03401.9 gi|336253850|ref|YP_004596957.1| - 3.8e-16 58.8 0.0 4.9e-16 58.4 0.0 1.1 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter family receptor UCR_Fe-S_N PF10399.4 gi|336253850|ref|YP_004596957.1| - 0.025 13.7 1.3 0.055 12.6 0.9 1.5 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Phosphonate-bd PF12974.2 gi|336253850|ref|YP_004596957.1| - 0.036 13.4 0.0 0.07 12.5 0.0 1.4 1 0 0 1 1 1 0 ABC transporter, phosphonate, periplasmic substrate-binding protein Aldo_ket_red PF00248.16 gi|336253851|ref|YP_004596958.1| - 3.6e-71 239.2 0.0 4e-71 239.1 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family Lipase_GDSL_2 PF13472.1 gi|336253851|ref|YP_004596958.1| - 0.0096 16.0 0.1 0.69 10.0 0.0 2.6 2 1 1 3 3 3 1 GDSL-like Lipase/Acylhydrolase family AAA_11 PF13086.1 gi|336253852|ref|YP_004596959.1| - 3.1e-41 141.5 0.3 4.2e-20 72.3 0.1 3.0 2 1 1 3 3 3 2 AAA domain AAA_12 PF13087.1 gi|336253852|ref|YP_004596959.1| - 5.1e-39 133.7 0.0 8e-39 133.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain Dna2 PF08696.6 gi|336253852|ref|YP_004596959.1| - 8.3e-31 106.9 0.0 5.1e-30 104.3 0.0 2.0 1 1 0 1 1 1 1 DNA replication factor Dna2 PDDEXK_1 PF12705.2 gi|336253852|ref|YP_004596959.1| - 2.6e-16 59.7 0.0 1.6e-15 57.2 0.0 2.3 2 0 0 2 2 2 1 PD-(D/E)XK nuclease superfamily AAA_30 PF13604.1 gi|336253852|ref|YP_004596959.1| - 3.6e-16 59.3 1.3 1.7e-15 57.0 0.3 2.5 2 1 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|336253852|ref|YP_004596959.1| - 2.6e-15 55.9 2.8 1.3e-13 50.5 0.3 2.7 2 0 0 2 2 2 1 Part of AAA domain Viral_helicase1 PF01443.13 gi|336253852|ref|YP_004596959.1| - 6.9e-07 29.0 0.0 0.0027 17.2 0.0 3.1 3 0 0 3 3 3 2 Viral (Superfamily 1) RNA helicase UvrD-helicase PF00580.16 gi|336253852|ref|YP_004596959.1| - 8.7e-06 25.2 0.0 1.5e-05 24.4 0.0 1.4 1 0 0 1 1 1 1 UvrD/REP helicase N-terminal domain Cas_Cas4 PF01930.12 gi|336253852|ref|YP_004596959.1| - 2.8e-05 24.0 0.0 0.00026 20.9 0.0 2.3 2 1 0 2 2 2 1 Domain of unknown function DUF83 Helicase_RecD PF05127.9 gi|336253852|ref|YP_004596959.1| - 7.4e-05 22.4 0.1 0.00029 20.5 0.0 2.0 2 0 0 2 2 2 1 Helicase AAA_16 PF13191.1 gi|336253852|ref|YP_004596959.1| - 9e-05 22.5 0.2 0.0003 20.8 0.1 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|336253852|ref|YP_004596959.1| - 0.00042 20.4 0.0 0.0017 18.4 0.0 2.1 2 1 0 2 2 1 1 AAA domain ResIII PF04851.10 gi|336253852|ref|YP_004596959.1| - 0.0019 18.0 0.0 0.0038 17.0 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit PhoH PF02562.11 gi|336253852|ref|YP_004596959.1| - 0.0051 16.0 0.1 0.015 14.5 0.0 1.7 1 1 0 1 1 1 1 PhoH-like protein DUF4350 PF14258.1 gi|336253852|ref|YP_004596959.1| - 0.0077 16.4 1.0 67 3.7 0.0 5.1 5 0 0 5 5 4 0 Domain of unknown function (DUF4350) AAA PF00004.24 gi|336253852|ref|YP_004596959.1| - 0.01 16.0 0.2 0.039 14.1 0.1 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.12 gi|336253852|ref|YP_004596959.1| - 0.013 14.9 0.0 0.026 13.9 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein T2SE PF00437.15 gi|336253852|ref|YP_004596959.1| - 0.016 14.1 0.0 0.036 12.9 0.0 1.6 2 0 0 2 2 2 0 Type II/IV secretion system protein DUF2075 PF09848.4 gi|336253852|ref|YP_004596959.1| - 0.029 13.3 0.0 0.055 12.4 0.0 1.5 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) UvrD_C_2 PF13538.1 gi|336253852|ref|YP_004596959.1| - 0.033 14.3 0.0 0.12 12.5 0.0 2.0 2 0 0 2 2 1 0 UvrD-like helicase C-terminal domain DEAD PF00270.24 gi|336253852|ref|YP_004596959.1| - 0.038 13.4 0.0 0.078 12.4 0.0 1.5 1 0 0 1 1 1 0 DEAD/DEAH box helicase AAA_10 PF12846.2 gi|336253852|ref|YP_004596959.1| - 0.041 13.3 0.0 1.2 8.4 0.0 2.3 1 1 1 2 2 2 0 AAA-like domain AAA_25 PF13481.1 gi|336253852|ref|YP_004596959.1| - 0.047 13.0 0.1 0.41 10.0 0.0 2.5 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.17 gi|336253852|ref|YP_004596959.1| - 0.074 12.4 0.1 0.27 10.6 0.0 2.0 3 0 0 3 3 2 0 SRP54-type protein, GTPase domain TrwB_AAD_bind PF10412.4 gi|336253852|ref|YP_004596959.1| - 0.078 11.5 0.0 0.12 10.9 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_5 PF07728.9 gi|336253852|ref|YP_004596959.1| - 0.11 12.2 0.1 0.39 10.4 0.0 1.9 1 1 1 2 2 2 0 AAA domain (dynein-related subfamily) PIF1 PF05970.9 gi|336253852|ref|YP_004596959.1| - 0.17 10.7 0.0 3.3 6.5 0.0 2.1 2 0 0 2 2 2 0 PIF1-like helicase SPW PF03779.9 gi|336253853|ref|YP_004596960.1| - 1e-06 27.9 17.4 0.00022 20.5 2.7 2.4 2 0 0 2 2 2 2 SPW repeat NVEALA PF14055.1 gi|336253853|ref|YP_004596960.1| - 0.059 13.0 1.8 1.6 8.5 0.0 2.6 3 0 0 3 3 3 0 NVEALA protein PGPGW PF09656.5 gi|336253854|ref|YP_004596961.1| - 0.01 15.1 0.6 0.02 14.2 0.0 1.7 2 0 0 2 2 2 0 Putative transmembrane protein (PGPGW) DoxX_2 PF13564.1 gi|336253854|ref|YP_004596961.1| - 0.017 15.0 4.0 0.022 14.7 2.8 1.3 1 1 0 1 1 1 0 DoxX-like family HHH_2 PF12826.2 gi|336253855|ref|YP_004596962.1| - 0.00056 19.7 0.7 0.043 13.7 0.5 2.3 2 0 0 2 2 2 1 Helix-hairpin-helix motif COG2 PF06148.6 gi|336253855|ref|YP_004596962.1| - 0.088 12.6 0.1 0.15 11.8 0.1 1.3 1 1 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 PGM_PMM_II PF02879.11 gi|336253855|ref|YP_004596962.1| - 0.096 13.0 0.1 0.31 11.4 0.0 1.8 2 0 0 2 2 2 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II GPP34 PF05719.6 gi|336253855|ref|YP_004596962.1| - 0.11 12.5 0.4 0.18 11.8 0.3 1.6 1 1 0 1 1 1 0 Golgi phosphoprotein 3 (GPP34) Peripla_BP_2 PF01497.13 gi|336253856|ref|YP_004596963.1| - 2.8e-16 59.3 0.0 1.1e-15 57.4 0.0 1.8 1 1 1 2 2 2 1 Periplasmic binding protein Clenterotox PF03505.9 gi|336253856|ref|YP_004596963.1| - 0.075 12.4 0.1 0.13 11.6 0.0 1.2 1 0 0 1 1 1 0 Clostridium enterotoxin DUF3225 PF11533.3 gi|336253857|ref|YP_004596964.1| - 1.4e-05 24.7 0.1 2.5e-05 23.9 0.1 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF3225) SnoaL_3 PF13474.1 gi|336253857|ref|YP_004596964.1| - 0.0041 17.1 2.5 0.01 15.8 0.6 2.0 2 0 0 2 2 2 1 SnoaL-like domain DUF2342 PF10103.4 gi|336253859|ref|YP_004596966.1| - 1e-82 277.8 2.0 4e-46 157.5 0.2 2.0 1 1 1 2 2 2 2 Uncharacterised conserved protein (DUF2342) Peptidase_MA_2 PF13485.1 gi|336253859|ref|YP_004596966.1| - 0.0039 17.2 3.4 0.057 13.4 2.3 2.3 1 1 0 1 1 1 1 Peptidase MA superfamily LSM PF01423.17 gi|336253861|ref|YP_004596968.1| - 1.6e-18 65.9 0.0 2e-18 65.6 0.0 1.1 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.1 gi|336253861|ref|YP_004596968.1| - 2.1e-06 27.5 0.0 2.6e-06 27.2 0.0 1.2 1 0 0 1 1 1 1 Ataxin 2 SM domain Ribosomal_L37e PF01907.14 gi|336253862|ref|YP_004596969.1| - 4.9e-26 90.2 12.1 5.3e-26 90.1 8.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e DZR PF12773.2 gi|336253862|ref|YP_004596969.1| - 0.0063 16.2 2.7 0.008 15.9 1.9 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_6 PF14599.1 gi|336253862|ref|YP_004596969.1| - 0.02 14.6 1.9 0.025 14.3 1.3 1.2 1 0 0 1 1 1 0 Zinc-ribbon zf-RanBP PF00641.13 gi|336253862|ref|YP_004596969.1| - 0.065 12.3 2.9 1.1 8.4 0.1 2.3 2 0 0 2 2 2 0 Zn-finger in Ran binding protein and others zf-ribbon_3 PF13248.1 gi|336253862|ref|YP_004596969.1| - 0.067 12.4 4.8 0.62 9.3 3.2 2.1 1 1 2 3 3 3 0 zinc-ribbon domain HypA PF01155.14 gi|336253862|ref|YP_004596969.1| - 0.09 12.4 2.0 0.099 12.3 1.4 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Zn_Tnp_IS91 PF14319.1 gi|336253862|ref|YP_004596969.1| - 0.2 11.2 3.1 0.22 11.0 2.2 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain GCC2_GCC3 PF07699.8 gi|336253862|ref|YP_004596969.1| - 0.24 11.0 6.1 0.47 10.0 4.2 1.6 1 1 0 1 1 1 0 GCC2 and GCC3 zinc_ribbon_2 PF13240.1 gi|336253862|ref|YP_004596969.1| - 0.56 9.7 6.4 2.7 7.6 0.3 2.0 1 1 1 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|336253862|ref|YP_004596969.1| - 0.64 9.7 7.0 1.2 8.7 4.9 1.5 1 1 0 1 1 1 0 Putative transposase DNA-binding domain RNA_POL_M_15KD PF02150.11 gi|336253862|ref|YP_004596969.1| - 0.81 9.4 5.8 4.2 7.1 0.4 2.2 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit zf-CSL PF05207.8 gi|336253862|ref|YP_004596969.1| - 2.3 7.7 5.4 7.1 6.2 3.7 1.7 1 1 0 1 1 1 0 CSL zinc finger zf-C2H2_3 PF13878.1 gi|336253862|ref|YP_004596969.1| - 2.7 7.6 8.8 7.4 6.2 0.8 2.2 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO zinc_ribbon_4 PF13717.1 gi|336253862|ref|YP_004596969.1| - 6.4 6.5 7.3 3.4 7.4 1.3 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|336253862|ref|YP_004596969.1| - 9 5.9 7.8 3.3 7.3 1.3 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF4013 PF13197.1 gi|336253863|ref|YP_004596970.1| - 1.2e-34 119.0 18.9 1.2e-34 119.0 13.1 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF4013) DUF1282 PF06930.7 gi|336253863|ref|YP_004596970.1| - 0.69 9.5 15.3 0.013 15.1 4.6 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1282) EI24 PF07264.6 gi|336253863|ref|YP_004596970.1| - 1.2 8.4 20.7 5.2 6.4 14.3 2.2 1 1 0 1 1 1 0 Etoposide-induced protein 2.4 (EI24) PALP PF00291.20 gi|336253864|ref|YP_004596971.1| - 2.9e-54 184.3 0.7 3.4e-54 184.1 0.5 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme TF_Zn_Ribbon PF08271.7 gi|336253864|ref|YP_004596971.1| - 0.019 14.2 1.8 0.052 12.8 1.2 1.8 1 0 0 1 1 1 0 TFIIB zinc-binding HypA PF01155.14 gi|336253864|ref|YP_004596971.1| - 0.026 14.1 0.2 0.048 13.3 0.2 1.4 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DUF1936 PF09151.5 gi|336253864|ref|YP_004596971.1| - 0.043 13.3 0.2 0.092 12.2 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF1936) AlaDh_PNT_C PF01262.16 gi|336253864|ref|YP_004596971.1| - 0.078 12.5 1.1 0.13 11.7 0.7 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain FYVE PF01363.16 gi|336253864|ref|YP_004596971.1| - 0.14 12.1 0.0 0.24 11.3 0.0 1.3 1 0 0 1 1 1 0 FYVE zinc finger Prok-RING_1 PF14446.1 gi|336253864|ref|YP_004596971.1| - 0.23 11.2 1.6 0.41 10.4 1.1 1.4 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zf-LYAR PF08790.6 gi|336253864|ref|YP_004596971.1| - 0.38 10.4 1.2 0.49 10.1 0.0 1.8 2 0 0 2 2 2 0 LYAR-type C2HC zinc finger PcrB PF01884.12 gi|336253865|ref|YP_004596972.1| - 1.6e-48 164.9 0.2 1.9e-48 164.7 0.1 1.0 1 0 0 1 1 1 1 PcrB family HTH_10 PF04967.7 gi|336253866|ref|YP_004596973.1| - 1.2e-15 56.8 0.0 1.8e-15 56.2 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain HTH_AsnC-type PF13404.1 gi|336253866|ref|YP_004596973.1| - 0.015 14.8 0.3 0.037 13.5 0.2 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Sigma70_r4 PF04545.11 gi|336253866|ref|YP_004596973.1| - 0.057 12.7 0.3 0.13 11.6 0.2 1.7 1 1 0 1 1 1 0 Sigma-70, region 4 HTH_10 PF04967.7 gi|336253869|ref|YP_004596976.1| - 1.7e-15 56.2 0.2 2.8e-15 55.6 0.2 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4_2 PF08281.7 gi|336253869|ref|YP_004596976.1| - 0.00049 19.4 1.5 0.0078 15.6 0.4 2.8 2 1 0 2 2 2 1 Sigma-70, region 4 HTH_24 PF13412.1 gi|336253869|ref|YP_004596976.1| - 0.0029 16.9 0.0 0.0052 16.1 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding LexA_DNA_bind PF01726.11 gi|336253869|ref|YP_004596976.1| - 0.0088 15.5 0.1 0.027 14.0 0.1 1.8 1 1 0 1 1 1 1 LexA DNA binding domain Sigma70_r4 PF04545.11 gi|336253869|ref|YP_004596976.1| - 0.013 14.8 0.1 0.031 13.5 0.1 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 GerE PF00196.14 gi|336253869|ref|YP_004596976.1| - 0.014 14.6 0.1 0.087 12.1 0.0 2.0 1 1 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_5 PF01022.15 gi|336253869|ref|YP_004596976.1| - 0.076 12.6 0.0 0.17 11.5 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|336253869|ref|YP_004596976.1| - 0.078 12.6 0.1 0.21 11.2 0.0 1.7 1 0 0 1 1 1 0 MarR family p450 PF00067.17 gi|336253870|ref|YP_004596977.1| - 1.6e-95 320.3 0.0 1.9e-95 320.1 0.0 1.0 1 0 0 1 1 1 1 Cytochrome P450 DUF1476 PF07345.6 gi|336253870|ref|YP_004596977.1| - 0.12 12.6 0.4 0.48 10.6 0.2 2.0 3 0 0 3 3 3 0 Domain of unknown function (DUF1476) PIN PF01850.16 gi|336253872|ref|YP_004596979.1| - 2e-07 31.3 0.3 2.6e-07 31.0 0.2 1.1 1 0 0 1 1 1 1 PIN domain tRNA-synt_2 PF00152.15 gi|336253873|ref|YP_004596980.1| - 8e-89 297.7 0.0 1e-88 297.3 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.20 gi|336253873|ref|YP_004596980.1| - 7e-15 54.6 0.2 1.3e-14 53.7 0.2 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.15 gi|336253873|ref|YP_004596980.1| - 0.00087 18.5 0.1 0.16 11.1 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) Na_H_Exchanger PF00999.16 gi|336253874|ref|YP_004596981.1| - 6.3e-36 123.7 27.3 7.7e-36 123.4 18.9 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Usp PF00582.21 gi|336253875|ref|YP_004596982.1| - 2.1e-37 128.4 0.2 2.5e-37 128.1 0.1 1.1 1 0 0 1 1 1 1 Universal stress protein family DNA_photolyase PF00875.13 gi|336253875|ref|YP_004596982.1| - 0.015 15.0 0.0 0.023 14.4 0.0 1.2 1 0 0 1 1 1 0 DNA photolyase GHMP_kinases_N PF00288.21 gi|336253877|ref|YP_004596984.1| - 2.3e-11 43.5 0.8 5.2e-11 42.4 0.6 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain DUF1508 PF07411.7 gi|336253878|ref|YP_004596985.1| - 3.4e-36 122.4 0.0 5.7e-06 25.6 0.0 12.1 13 0 0 13 13 13 5 Domain of unknown function (DUF1508) DDE_Tnp_IS240 PF13610.1 gi|336253878|ref|YP_004596985.1| - 9.2e-07 28.9 7.9 8.6 6.3 0.0 7.3 8 0 0 8 8 8 2 DDE domain MalF_P2 PF14785.1 gi|336253878|ref|YP_004596985.1| - 0.0092 15.8 0.0 19 5.0 0.0 4.2 4 1 1 5 5 5 0 Maltose transport system permease protein MalF P2 domain SPOR PF05036.8 gi|336253878|ref|YP_004596985.1| - 0.0097 16.0 3.9 29 4.9 0.0 5.6 6 0 0 6 6 6 0 Sporulation related domain PPC PF04151.10 gi|336253878|ref|YP_004596985.1| - 0.051 14.5 0.5 0.42 11.6 0.0 2.8 2 0 0 2 2 2 0 Bacterial pre-peptidase C-terminal domain DUF2914 PF11141.3 gi|336253878|ref|YP_004596985.1| - 0.4 10.2 0.0 0.4 10.2 0.0 4.5 6 0 0 6 6 6 0 Protein of unknown function (DUF2914) DUF2188 PF09954.4 gi|336253878|ref|YP_004596985.1| - 0.47 10.4 0.0 0.47 10.4 0.0 6.8 6 1 1 7 7 7 0 Uncharacterized protein conserved in bacteria (DUF2188) CelD_N PF02927.9 gi|336253878|ref|YP_004596985.1| - 1.6 9.0 11.7 32 4.8 0.0 6.6 9 1 0 9 9 9 0 N-terminal ig-like domain of cellulase DUF137 PF02006.11 gi|336253879|ref|YP_004596986.1| - 2.8e-75 251.6 3.0 3.5e-75 251.2 2.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF137 SBF PF01758.11 gi|336253880|ref|YP_004596987.1| - 7.5e-31 106.9 7.1 7.5e-31 106.9 4.9 1.9 2 0 0 2 2 2 1 Sodium Bile acid symporter family Gly-zipper_YMGG PF13441.1 gi|336253882|ref|YP_004596989.1| - 4.5e-05 22.8 21.2 5.6e-05 22.5 14.7 1.1 1 0 0 1 1 1 1 YMGG-like Gly-zipper Gly-zipper_Omp PF13488.1 gi|336253882|ref|YP_004596989.1| - 7.6e-05 22.2 21.3 9.2e-05 22.0 14.7 1.2 1 0 0 1 1 1 1 Glycine zipper Gly-zipper_OmpA PF13436.1 gi|336253882|ref|YP_004596989.1| - 0.00043 19.9 12.7 0.00052 19.6 8.8 1.0 1 0 0 1 1 1 1 Glycine-zipper containing OmpA-like membrane domain Bacteriocin_IIc PF10439.4 gi|336253882|ref|YP_004596989.1| - 0.045 13.8 14.3 0.058 13.5 9.9 1.2 1 0 0 1 1 1 0 Bacteriocin class II with double-glycine leader peptide DUF533 PF04391.7 gi|336253882|ref|YP_004596989.1| - 1.3 8.4 6.8 1.4 8.2 4.7 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF533) TraT PF05818.7 gi|336253882|ref|YP_004596989.1| - 3.6 6.9 6.2 4.4 6.6 4.3 1.1 1 0 0 1 1 1 0 Enterobacterial TraT complement resistance protein Rick_17kDa_Anti PF05433.10 gi|336253882|ref|YP_004596989.1| - 6.7 6.4 27.8 16 5.2 19.3 1.7 1 1 0 1 1 1 0 Glycine zipper 2TM domain tRNA-synt_1b PF00579.20 gi|336253883|ref|YP_004596990.1| - 1.3e-47 162.3 0.0 1.6e-47 162.0 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) tRNA-synt_1f PF01921.13 gi|336253883|ref|YP_004596990.1| - 0.053 12.1 0.0 6.3 5.3 0.0 2.2 2 0 0 2 2 2 0 tRNA synthetases class I (K) PHD PF00628.24 gi|336253884|ref|YP_004596991.1| - 0.00016 21.2 8.5 0.0011 18.5 5.9 1.9 1 1 0 1 1 1 1 PHD-finger zinc_ribbon_2 PF13240.1 gi|336253884|ref|YP_004596991.1| - 0.00021 20.6 4.8 0.0014 18.0 1.3 2.2 2 0 0 2 2 2 1 zinc-ribbon domain DZR PF12773.2 gi|336253884|ref|YP_004596991.1| - 0.00027 20.6 7.3 0.00047 19.9 5.1 1.4 1 0 0 1 1 1 1 Double zinc ribbon Prok-RING_1 PF14446.1 gi|336253884|ref|YP_004596991.1| - 0.00037 20.1 8.9 0.00064 19.4 6.2 1.4 1 1 0 1 1 1 1 Prokaryotic RING finger family 1 C1_1 PF00130.17 gi|336253884|ref|YP_004596991.1| - 0.0013 18.3 6.4 0.0014 18.2 2.6 1.9 1 1 1 2 2 2 1 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-ribbon_3 PF13248.1 gi|336253884|ref|YP_004596991.1| - 0.002 17.3 2.4 0.027 13.6 0.3 2.3 2 0 0 2 2 2 1 zinc-ribbon domain Ribosomal_L37e PF01907.14 gi|336253884|ref|YP_004596991.1| - 0.0021 17.8 7.0 0.11 12.2 1.1 2.1 1 1 1 2 2 2 2 Ribosomal protein L37e NOB1_Zn_bind PF08772.6 gi|336253884|ref|YP_004596991.1| - 0.02 14.7 1.9 0.02 14.7 1.3 1.9 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like C1_3 PF07649.7 gi|336253884|ref|YP_004596991.1| - 0.049 13.6 2.5 0.049 13.6 1.7 2.1 2 1 0 2 2 2 0 C1-like domain YhfH PF14149.1 gi|336253884|ref|YP_004596991.1| - 0.096 12.4 14.1 1.3 8.8 3.8 2.9 1 1 2 3 3 3 0 YhfH-like protein DUF4206 PF13901.1 gi|336253884|ref|YP_004596991.1| - 0.13 11.8 5.7 0.14 11.6 4.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4206) DUF1610 PF07754.6 gi|336253884|ref|YP_004596991.1| - 0.21 11.7 10.3 0.5 10.5 0.2 3.2 3 1 0 3 3 3 0 Domain of unknown function (DUF1610) HypA PF01155.14 gi|336253884|ref|YP_004596991.1| - 0.4 10.3 9.2 15 5.3 6.6 2.0 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family RNA_POL_M_15KD PF02150.11 gi|336253884|ref|YP_004596991.1| - 0.43 10.2 9.6 0.97 9.1 3.4 2.5 1 1 0 2 2 2 0 RNA polymerases M/15 Kd subunit zf-AN1 PF01428.11 gi|336253884|ref|YP_004596991.1| - 0.56 10.1 9.0 3.4 7.6 1.3 2.2 2 0 0 2 2 2 0 AN1-like Zinc finger DUF326 PF03860.11 gi|336253884|ref|YP_004596991.1| - 0.58 10.0 3.3 4.9 7.1 0.6 2.9 2 1 0 2 2 2 0 Domain of Unknown Function (DUF326) Tnp_zf-ribbon_2 PF13842.1 gi|336253884|ref|YP_004596991.1| - 0.62 10.5 7.5 7.2 7.1 2.1 2.3 1 1 1 2 2 2 0 DDE_Tnp_1-like zinc-ribbon OrfB_Zn_ribbon PF07282.6 gi|336253884|ref|YP_004596991.1| - 0.68 9.6 10.0 1.5 8.5 1.8 2.1 1 1 1 2 2 2 0 Putative transposase DNA-binding domain Chordopox_RPO7 PF05864.7 gi|336253884|ref|YP_004596991.1| - 0.71 10.0 4.9 4.3 7.5 0.1 2.4 1 1 1 2 2 2 0 Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7) GCC2_GCC3 PF07699.8 gi|336253884|ref|YP_004596991.1| - 0.92 9.1 10.7 0.09 12.3 3.1 1.9 1 1 1 2 2 2 0 GCC2 and GCC3 NinF PF05810.7 gi|336253884|ref|YP_004596991.1| - 0.96 9.3 6.5 0.19 11.5 2.0 1.7 1 1 1 2 2 2 0 NinF protein NMD3 PF04981.8 gi|336253884|ref|YP_004596991.1| - 0.96 8.5 8.5 1.1 8.3 5.9 1.0 1 0 0 1 1 1 0 NMD3 family zf-RING_5 PF14634.1 gi|336253884|ref|YP_004596991.1| - 1.2 8.9 7.6 1.4 8.6 5.2 1.2 1 0 0 1 1 1 0 zinc-RING finger domain zf-C4pol PF14260.1 gi|336253884|ref|YP_004596991.1| - 1.7 8.6 6.9 0.41 10.6 0.9 2.0 1 1 1 2 2 2 0 C4-type zinc-finger of DNA polymerase delta zf-UDP PF14569.1 gi|336253884|ref|YP_004596991.1| - 1.8 8.3 6.9 3.3 7.5 4.7 1.5 1 1 0 1 1 1 0 Zinc-binding RING-finger Nudix_N_2 PF14803.1 gi|336253884|ref|YP_004596991.1| - 1.8 8.2 10.2 6.3 6.5 0.7 3.1 3 0 0 3 3 3 0 Nudix N-terminal Ribosomal_S27e PF01667.12 gi|336253884|ref|YP_004596991.1| - 1.9 8.0 8.9 18 4.9 0.1 2.9 1 1 1 2 2 2 0 Ribosomal protein S27 RNA_pol_N PF01194.12 gi|336253884|ref|YP_004596991.1| - 2.4 8.2 6.5 7.6 6.6 3.0 2.2 1 1 1 2 2 2 0 RNA polymerases N / 8 kDa subunit Cript PF10235.4 gi|336253884|ref|YP_004596991.1| - 2.5 8.5 7.0 6.9 7.1 4.9 1.8 1 1 0 1 1 1 0 Microtubule-associated protein CRIPT Zn-ribbon_8 PF09723.5 gi|336253884|ref|YP_004596991.1| - 3.8 7.5 11.7 23 5.0 4.2 2.6 1 1 1 2 2 2 0 Zinc ribbon domain zf-MYND PF01753.13 gi|336253884|ref|YP_004596991.1| - 4.4 7.2 7.9 1.1e+02 2.8 5.5 2.2 1 1 0 1 1 1 0 MYND finger zf-dskA_traR PF01258.12 gi|336253884|ref|YP_004596991.1| - 4.9 6.9 15.3 9.6 6.0 5.2 2.8 2 1 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger TF_Zn_Ribbon PF08271.7 gi|336253884|ref|YP_004596991.1| - 5.3 6.4 10.4 0.41 9.9 0.6 2.9 2 1 1 3 3 3 0 TFIIB zinc-binding zf-C3HC4_3 PF13920.1 gi|336253884|ref|YP_004596991.1| - 6.1 6.6 7.6 1.3e+02 2.2 5.3 2.4 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) DUF35_N PF12172.3 gi|336253884|ref|YP_004596991.1| - 6.2 6.8 9.1 3.4 7.7 0.4 3.0 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Lar_restr_allev PF14354.1 gi|336253884|ref|YP_004596991.1| - 7.6 6.9 10.1 5 7.4 3.1 2.1 1 1 1 2 2 2 0 Restriction alleviation protein Lar PHD_2 PF13831.1 gi|336253884|ref|YP_004596991.1| - 7.7 5.9 9.6 1.8 7.9 3.2 2.4 2 1 0 2 2 2 0 PHD-finger DUF305 PF03713.8 gi|336253885|ref|YP_004596992.1| - 9.5e-31 106.6 0.0 1.3e-30 106.2 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF305) DUF4142 PF13628.1 gi|336253885|ref|YP_004596992.1| - 1.2e-10 41.5 0.0 4.3e-10 39.7 0.0 1.8 1 1 0 1 1 1 1 Domain of unknown function (DUF4142) BPL_LplA_LipB PF03099.14 gi|336253886|ref|YP_004596993.1| - 1.2e-19 70.5 0.0 1.8e-19 69.9 0.0 1.2 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family HTH_11 PF08279.7 gi|336253886|ref|YP_004596993.1| - 5.5e-13 48.3 0.0 9.8e-13 47.5 0.0 1.4 1 0 0 1 1 1 1 HTH domain BPL_C PF02237.12 gi|336253886|ref|YP_004596993.1| - 1.1e-12 47.4 0.2 1.9e-12 46.6 0.1 1.4 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain HTH_20 PF12840.2 gi|336253886|ref|YP_004596993.1| - 1.5e-06 27.8 0.1 1.6e-05 24.5 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|336253886|ref|YP_004596993.1| - 5.1e-06 25.7 0.0 8.4e-06 25.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|336253886|ref|YP_004596993.1| - 2.2e-05 24.0 0.0 3.8e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|336253886|ref|YP_004596993.1| - 0.0017 17.9 0.0 0.0045 16.6 0.0 1.8 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.15 gi|336253886|ref|YP_004596993.1| - 0.0085 16.1 0.0 0.015 15.4 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator HTH_AsnC-type PF13404.1 gi|336253886|ref|YP_004596993.1| - 0.028 13.9 0.1 0.12 11.9 0.0 2.2 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Fe_dep_repress PF01325.14 gi|336253886|ref|YP_004596993.1| - 0.049 13.5 0.0 0.24 11.3 0.0 2.0 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_28 PF13518.1 gi|336253886|ref|YP_004596993.1| - 0.05 13.6 0.0 0.16 12.0 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain NYN PF01936.13 gi|336253887|ref|YP_004596994.1| - 0.014 15.7 0.2 0.23 11.7 0.1 2.0 1 1 1 2 2 2 0 NYN domain MarR_2 PF12802.2 gi|336253887|ref|YP_004596994.1| - 0.044 13.4 0.1 3.7 7.3 0.0 2.4 1 1 0 1 1 1 0 MarR family HTH_20 PF12840.2 gi|336253887|ref|YP_004596994.1| - 0.06 13.1 0.1 0.85 9.4 0.0 2.2 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_10 PF04967.7 gi|336253888|ref|YP_004596995.1| - 7.4e-15 54.2 0.5 1.3e-14 53.4 0.0 1.7 2 0 0 2 2 2 1 HTH DNA binding domain Sigma70_r4 PF04545.11 gi|336253888|ref|YP_004596995.1| - 0.0003 20.0 0.0 0.0014 17.8 0.0 2.0 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_AsnC-type PF13404.1 gi|336253888|ref|YP_004596995.1| - 0.011 15.2 0.1 0.024 14.1 0.1 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain MarR_2 PF12802.2 gi|336253888|ref|YP_004596995.1| - 0.013 15.1 0.0 0.031 13.9 0.0 1.7 1 0 0 1 1 1 0 MarR family Sigma70_r4_2 PF08281.7 gi|336253888|ref|YP_004596995.1| - 0.021 14.2 0.0 0.33 10.4 0.0 2.3 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_24 PF13412.1 gi|336253888|ref|YP_004596995.1| - 0.033 13.5 0.0 0.058 12.7 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding SnoaL_2 PF12680.2 gi|336253888|ref|YP_004596995.1| - 0.13 12.6 1.6 6.3 7.2 0.4 2.3 1 1 1 2 2 2 0 SnoaL-like domain Usp PF00582.21 gi|336253889|ref|YP_004596996.1| - 8.6e-38 129.6 0.4 1e-37 129.4 0.3 1.1 1 0 0 1 1 1 1 Universal stress protein family SIMPL PF04402.9 gi|336253889|ref|YP_004596996.1| - 0.091 12.6 0.0 0.13 12.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF541) Nuc_deoxyrib_tr PF05014.10 gi|336253890|ref|YP_004596997.1| - 7.3e-14 51.6 0.0 8.1e-14 51.4 0.0 1.1 1 0 0 1 1 1 1 Nucleoside 2-deoxyribosyltransferase HD PF01966.17 gi|336253891|ref|YP_004596998.1| - 2.4e-11 43.6 3.2 4.7e-11 42.7 2.2 1.5 1 0 0 1 1 1 1 HD domain DUF3632 PF12311.3 gi|336253891|ref|YP_004596998.1| - 0.12 12.2 0.2 0.12 12.2 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3632) Amidohydro_1 PF01979.15 gi|336253892|ref|YP_004596999.1| - 1.9e-23 83.6 0.0 1.7e-21 77.2 0.0 2.1 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|336253892|ref|YP_004596999.1| - 2e-12 47.7 0.4 2.9e-11 43.9 0.2 2.1 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_5 PF13594.1 gi|336253892|ref|YP_004596999.1| - 9.3e-07 28.5 0.0 1.9e-06 27.6 0.0 1.5 1 0 0 1 1 1 1 Amidohydrolase A_deaminase PF00962.17 gi|336253892|ref|YP_004596999.1| - 0.001 18.0 0.0 0.0018 17.2 0.0 1.3 1 0 0 1 1 1 1 Adenosine/AMP deaminase Amidohydro_3 PF07969.6 gi|336253892|ref|YP_004596999.1| - 0.0016 17.7 3.6 1.3 8.1 0.0 3.2 2 1 1 3 3 3 2 Amidohydrolase family MFS_1 PF07690.11 gi|336253893|ref|YP_004597000.1| - 6.8e-30 103.9 62.5 1.7e-26 92.7 28.3 1.6 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|336253893|ref|YP_004597000.1| - 2.6e-06 26.1 3.2 2.6e-06 26.1 2.2 2.1 2 0 0 2 2 2 2 MFS/sugar transport protein MFS_1_like PF12832.2 gi|336253893|ref|YP_004597000.1| - 0.022 14.5 0.1 14 5.5 0.0 3.1 3 0 0 3 3 3 0 MFS_1 like family COX1 PF00115.15 gi|336253894|ref|YP_004597001.1| - 4.5e-134 447.4 67.1 4.5e-134 447.4 46.5 2.9 3 1 1 4 4 4 1 Cytochrome C and Quinol oxidase polypeptide I COX3 PF00510.13 gi|336253894|ref|YP_004597001.1| - 7e-21 74.8 17.4 7e-21 74.8 12.1 3.3 4 0 0 4 4 4 1 Cytochrome c oxidase subunit III Aminotran_1_2 PF00155.16 gi|336253895|ref|YP_004597002.1| - 5.9e-66 222.8 0.0 7.2e-66 222.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.15 gi|336253895|ref|YP_004597002.1| - 0.00057 18.2 0.0 0.001 17.4 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme FTR PF01913.13 gi|336253895|ref|YP_004597002.1| - 0.0018 17.9 0.2 0.0051 16.5 0.1 1.7 1 0 0 1 1 1 1 Formylmethanofuran-tetrahydromethanopterin formyltransferase Aminotran_5 PF00266.14 gi|336253895|ref|YP_004597002.1| - 0.0034 16.1 0.0 0.078 11.6 0.0 2.3 2 1 0 2 2 2 1 Aminotransferase class-V Alliinase_C PF04864.8 gi|336253895|ref|YP_004597002.1| - 0.0076 14.9 0.0 0.026 13.2 0.0 1.7 1 1 0 1 1 1 1 Allinase AAA_18 PF13238.1 gi|336253896|ref|YP_004597003.1| - 2.1e-25 89.4 0.2 3.3e-25 88.8 0.2 1.3 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|336253896|ref|YP_004597003.1| - 4.7e-20 72.6 1.1 7.5e-20 71.9 0.8 1.5 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|336253896|ref|YP_004597003.1| - 0.00013 21.6 0.4 0.00069 19.3 0.0 2.1 2 1 0 2 2 2 1 Part of AAA domain AAA_28 PF13521.1 gi|336253896|ref|YP_004597003.1| - 0.00015 21.7 4.8 0.0008 19.4 3.3 2.2 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|336253896|ref|YP_004597003.1| - 0.00035 20.4 0.9 0.21 11.4 0.6 2.3 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|336253896|ref|YP_004597003.1| - 0.0013 18.9 0.0 0.0019 18.3 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|336253896|ref|YP_004597003.1| - 0.0013 18.7 1.7 0.0022 17.9 1.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain NTPase_1 PF03266.10 gi|336253896|ref|YP_004597003.1| - 0.004 16.8 0.0 0.0087 15.7 0.0 1.6 1 0 0 1 1 1 1 NTPase KTI12 PF08433.5 gi|336253896|ref|YP_004597003.1| - 0.009 15.2 0.0 0.012 14.8 0.0 1.3 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_5 PF07728.9 gi|336253896|ref|YP_004597003.1| - 0.018 14.7 0.0 0.058 13.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) ArgK PF03308.11 gi|336253896|ref|YP_004597003.1| - 0.019 13.7 0.2 0.04 12.7 0.0 1.6 2 0 0 2 2 2 0 ArgK protein APS_kinase PF01583.15 gi|336253896|ref|YP_004597003.1| - 0.028 14.0 0.0 0.043 13.4 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase MobB PF03205.9 gi|336253896|ref|YP_004597003.1| - 0.032 13.9 0.3 0.15 11.7 0.0 2.1 1 1 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B CoaE PF01121.15 gi|336253896|ref|YP_004597003.1| - 0.033 13.6 0.2 1.4 8.3 0.0 2.4 2 1 1 3 3 3 0 Dephospho-CoA kinase Thymidylate_kin PF02223.12 gi|336253896|ref|YP_004597003.1| - 0.034 13.5 0.3 0.33 10.3 0.0 2.1 2 0 0 2 2 2 0 Thymidylate kinase DUF87 PF01935.12 gi|336253896|ref|YP_004597003.1| - 0.061 13.1 0.0 0.2 11.4 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function DUF87 Zeta_toxin PF06414.7 gi|336253896|ref|YP_004597003.1| - 0.084 11.9 0.0 0.33 10.0 0.0 1.8 2 0 0 2 2 2 0 Zeta toxin FtsK_SpoIIIE PF01580.13 gi|336253896|ref|YP_004597003.1| - 0.13 11.7 1.4 1.2 8.5 0.1 2.4 2 1 0 2 2 2 0 FtsK/SpoIIIE family ABC_tran PF00005.22 gi|336253896|ref|YP_004597003.1| - 0.13 12.5 0.1 0.33 11.2 0.1 2.0 1 1 0 1 1 1 0 ABC transporter AAA PF00004.24 gi|336253896|ref|YP_004597003.1| - 0.15 12.2 0.8 0.26 11.5 0.1 1.8 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) CDP-OH_P_transf PF01066.16 gi|336253897|ref|YP_004597004.1| - 7.2e-13 48.7 10.2 2.2e-12 47.1 7.0 1.8 1 1 0 1 1 1 1 CDP-alcohol phosphatidyltransferase QCR10 PF09796.4 gi|336253897|ref|YP_004597004.1| - 2.5 7.8 4.6 1.2 8.8 0.5 2.2 2 0 0 2 2 2 0 Ubiquinol-cytochrome-c reductase complex subunit (QCR10) 7TMR-DISM_7TM PF07695.6 gi|336253897|ref|YP_004597004.1| - 7.3 6.1 12.7 1.7 8.3 1.2 2.5 3 0 0 3 3 3 0 7TM diverse intracellular signalling HTH_3 PF01381.17 gi|336253898|ref|YP_004597005.1| - 1.8e-10 40.5 0.3 2.4e-10 40.1 0.2 1.2 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|336253898|ref|YP_004597005.1| - 1.1e-09 38.2 0.3 1.6e-09 37.6 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|336253898|ref|YP_004597005.1| - 2.6e-08 33.9 0.1 4e-08 33.3 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|336253898|ref|YP_004597005.1| - 2.3e-05 23.9 0.6 3.4e-05 23.3 0.4 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain DUF2201_N PF13203.1 gi|336253898|ref|YP_004597005.1| - 0.041 13.0 3.7 0.051 12.7 2.6 1.1 1 0 0 1 1 1 0 Putative metallopeptidase domain DUF3775 PF12616.3 gi|336253898|ref|YP_004597005.1| - 0.085 12.6 0.1 0.14 11.9 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3775) NOA36 PF06524.7 gi|336253898|ref|YP_004597005.1| - 0.52 9.5 5.0 0.65 9.2 3.5 1.1 1 0 0 1 1 1 0 NOA36 protein Macoilin PF09726.4 gi|336253898|ref|YP_004597005.1| - 0.82 7.8 11.1 0.9 7.7 7.7 1.0 1 0 0 1 1 1 0 Transmembrane protein DUF4614 PF15391.1 gi|336253898|ref|YP_004597005.1| - 3.6 7.3 9.5 5.1 6.8 6.6 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4614) Apt1 PF10351.4 gi|336253898|ref|YP_004597005.1| - 6.2 5.5 9.2 7.5 5.2 6.4 1.2 1 0 0 1 1 1 0 Golgi-body localisation protein domain RAP1 PF07218.6 gi|336253898|ref|YP_004597005.1| - 9 4.2 12.5 10 4.0 8.7 1.2 1 0 0 1 1 1 0 Rhoptry-associated protein 1 (RAP-1) TIM PF00121.13 gi|336253899|ref|YP_004597006.1| - 5.8e-26 91.0 0.1 1.7e-23 82.9 0.0 2.0 1 1 0 1 1 1 1 Triosephosphate isomerase ThiG PF05690.9 gi|336253899|ref|YP_004597006.1| - 4.8e-05 22.5 1.5 4.8e-05 22.5 1.0 1.8 1 1 0 2 2 2 1 Thiazole biosynthesis protein ThiG IGPS PF00218.16 gi|336253899|ref|YP_004597006.1| - 0.0011 18.0 0.0 0.0029 16.6 0.0 1.7 1 1 0 1 1 1 1 Indole-3-glycerol phosphate synthase NMO PF03060.10 gi|336253899|ref|YP_004597006.1| - 0.024 13.7 10.1 0.013 14.6 5.1 1.7 1 1 1 2 2 2 0 Nitronate monooxygenase Hydrolase_like PF13242.1 gi|336253899|ref|YP_004597006.1| - 0.026 14.2 2.0 0.12 12.1 0.1 2.5 2 0 0 2 2 2 0 HAD-hyrolase-like FMN_dh PF01070.13 gi|336253899|ref|YP_004597006.1| - 0.033 13.0 9.7 0.083 11.7 6.3 2.1 1 1 0 1 1 1 0 FMN-dependent dehydrogenase PA PF02225.17 gi|336253899|ref|YP_004597006.1| - 0.038 13.6 1.1 0.23 11.1 0.3 2.2 2 0 0 2 2 2 0 PA domain Glu_synthase PF01645.12 gi|336253899|ref|YP_004597006.1| - 0.11 11.3 2.6 0.13 11.1 0.3 1.8 1 1 1 2 2 2 0 Conserved region in glutamate synthase TIR_2 PF13676.1 gi|336253901|ref|YP_004597008.1| - 7e-10 38.9 0.0 1e-09 38.4 0.0 1.3 1 0 0 1 1 1 1 TIR domain Nuc_deoxyrib_tr PF05014.10 gi|336253901|ref|YP_004597008.1| - 6.1e-05 22.8 0.0 9e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 Nucleoside 2-deoxyribosyltransferase DUF1863 PF08937.6 gi|336253901|ref|YP_004597008.1| - 0.00053 20.0 0.0 0.00076 19.5 0.0 1.2 1 0 0 1 1 1 1 MTH538 TIR-like domain (DUF1863) TIR PF01582.15 gi|336253901|ref|YP_004597008.1| - 0.028 13.8 0.0 0.05 13.0 0.0 1.4 2 0 0 2 2 2 0 TIR domain DnaJ PF00226.26 gi|336253902|ref|YP_004597009.1| - 1.8e-12 46.7 0.0 4e-12 45.7 0.0 1.5 1 0 0 1 1 1 1 DnaJ domain Arc_trans_TRASH PF08394.5 gi|336253902|ref|YP_004597009.1| - 0.011 15.9 0.1 0.011 15.9 0.1 3.2 5 0 0 5 5 5 0 Archaeal TRASH domain RPT PF13446.1 gi|336253902|ref|YP_004597009.1| - 0.049 13.0 0.0 0.092 12.1 0.0 1.5 1 0 0 1 1 1 0 A repeated domain in UCH-protein C1_1 PF00130.17 gi|336253902|ref|YP_004597009.1| - 0.23 11.2 9.3 0.37 10.5 0.0 3.2 3 0 0 3 3 3 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-FCS PF06467.9 gi|336253902|ref|YP_004597009.1| - 0.61 9.7 6.7 7.2 6.3 0.0 4.0 4 1 0 4 4 4 0 MYM-type Zinc finger with FCS sequence motif ATPase-cat_bd PF12156.3 gi|336253902|ref|YP_004597009.1| - 0.98 9.9 17.6 0.089 13.3 1.1 3.6 2 1 2 4 4 4 0 Putative metal-binding domain of cation transport ATPase DUF164 PF02591.10 gi|336253902|ref|YP_004597009.1| - 1.2 8.9 22.1 0.22 11.4 2.1 4.3 5 0 0 5 5 5 0 Putative zinc ribbon domain DUF3054 PF11255.3 gi|336253903|ref|YP_004597010.1| - 5.1e-23 81.0 10.8 6.2e-23 80.7 7.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3054) 2TM PF13239.1 gi|336253903|ref|YP_004597010.1| - 2.3 8.3 7.5 0.86 9.7 1.7 2.1 2 0 0 2 2 2 0 2TM domain DUF3185 PF11381.3 gi|336253903|ref|YP_004597010.1| - 6.8 6.5 9.8 0.12 12.1 0.6 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF3185) PetG PF02529.10 gi|336253904|ref|YP_004597011.1| - 0.041 13.4 6.7 0.51 9.9 4.6 2.2 1 1 0 1 1 1 0 Cytochrome B6-F complex subunit 5 IncA PF04156.9 gi|336253904|ref|YP_004597011.1| - 1.6 8.3 11.1 1.9 8.0 7.7 1.0 1 0 0 1 1 1 0 IncA protein OCD_Mu_crystall PF02423.10 gi|336253905|ref|YP_004597012.1| - 8.6e-60 202.1 0.7 1.1e-59 201.7 0.5 1.2 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family F420_oxidored PF03807.12 gi|336253905|ref|YP_004597012.1| - 3.1e-05 24.3 0.1 7.1e-05 23.1 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|336253905|ref|YP_004597012.1| - 0.00099 18.9 0.0 0.0016 18.2 0.0 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Shikimate_DH PF01488.15 gi|336253905|ref|YP_004597012.1| - 0.0045 17.0 0.0 0.007 16.4 0.0 1.2 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase GFO_IDH_MocA PF01408.17 gi|336253905|ref|YP_004597012.1| - 0.034 14.6 0.1 0.056 13.9 0.0 1.3 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold HTH_10 PF04967.7 gi|336253906|ref|YP_004597013.1| - 4.1e-17 61.4 0.0 5.7e-17 61.0 0.0 1.2 1 0 0 1 1 1 1 HTH DNA binding domain Serglycin PF04360.7 gi|336253906|ref|YP_004597013.1| - 0.004 16.8 0.3 0.0053 16.5 0.2 1.2 1 0 0 1 1 1 1 Serglycin MarR_2 PF12802.2 gi|336253906|ref|YP_004597013.1| - 0.011 15.4 0.6 0.022 14.4 0.4 1.6 1 1 0 1 1 1 0 MarR family HTH_11 PF08279.7 gi|336253906|ref|YP_004597013.1| - 0.066 12.8 0.2 0.12 12.0 0.1 1.4 1 0 0 1 1 1 0 HTH domain Sigma70_r4 PF04545.11 gi|336253906|ref|YP_004597013.1| - 0.079 12.2 0.1 0.17 11.2 0.1 1.6 1 1 0 1 1 1 0 Sigma-70, region 4 HTH_1 PF00126.22 gi|336253906|ref|YP_004597013.1| - 0.091 12.5 0.6 0.18 11.5 0.4 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family AF-4 PF05110.8 gi|336253906|ref|YP_004597013.1| - 0.27 9.0 6.3 0.33 8.7 4.4 1.0 1 0 0 1 1 1 0 AF-4 proto-oncoprotein Rod_cone_degen PF15201.1 gi|336253906|ref|YP_004597013.1| - 1.1 9.1 3.4 1.9 8.3 2.4 1.4 1 0 0 1 1 1 0 Progressive rod-cone degeneration Herpes_capsid PF06112.6 gi|336253906|ref|YP_004597013.1| - 4.3 7.3 6.4 5.6 6.9 4.4 1.1 1 0 0 1 1 1 0 Gammaherpesvirus capsid protein Cu-oxidase_3 PF07732.10 gi|336253907|ref|YP_004597014.1| - 1.1e-07 31.6 0.0 2.9e-07 30.2 0.0 1.8 1 0 0 1 1 1 1 Multicopper oxidase Cu-oxidase_2 PF07731.9 gi|336253907|ref|YP_004597014.1| - 1e-05 25.0 0.2 3e-05 23.5 0.0 2.0 2 1 0 2 2 2 1 Multicopper oxidase UCR_Fe-S_N PF10399.4 gi|336253907|ref|YP_004597014.1| - 0.068 12.3 0.7 0.15 11.2 0.5 1.6 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal TAT_signal PF10518.4 gi|336253907|ref|YP_004597014.1| - 7.3 6.8 13.4 0.06 13.3 3.0 2.4 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence DHH PF01368.15 gi|336253908|ref|YP_004597015.1| - 4.1e-12 45.9 0.1 5.9e-12 45.4 0.0 1.3 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|336253908|ref|YP_004597015.1| - 2.4e-10 39.9 0.2 6.9e-10 38.4 0.2 1.7 2 0 0 2 2 2 1 DHHA1 domain HSP20 PF00011.16 gi|336253909|ref|YP_004597016.1| - 1.8e-23 82.3 0.1 2.4e-23 81.9 0.0 1.2 1 0 0 1 1 1 1 Hsp20/alpha crystallin family CS PF04969.11 gi|336253909|ref|YP_004597016.1| - 0.0064 17.0 0.0 0.01 16.3 0.0 1.3 1 0 0 1 1 1 1 CS domain DUF2807 PF10988.3 gi|336253909|ref|YP_004597016.1| - 0.14 11.7 0.0 3.4 7.1 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2807) DJ-1_PfpI PF01965.19 gi|336253910|ref|YP_004597017.1| - 9e-16 57.6 0.2 2.8e-15 56.0 0.2 1.8 1 1 0 1 1 1 1 DJ-1/PfpI family ThuA PF06283.6 gi|336253910|ref|YP_004597017.1| - 0.02 14.5 0.0 0.023 14.4 0.0 1.2 1 0 0 1 1 1 0 Trehalose utilisation DUF4066 PF13278.1 gi|336253910|ref|YP_004597017.1| - 0.14 11.4 0.0 0.92 8.7 0.0 2.1 3 0 0 3 3 3 0 Putative amidotransferase TFIIB PF00382.14 gi|336253911|ref|YP_004597018.1| - 1.3e-05 24.9 0.2 3.3e-05 23.5 0.1 1.6 1 1 0 1 1 1 1 Transcription factor TFIIB repeat Sigma70_r4 PF04545.11 gi|336253911|ref|YP_004597018.1| - 0.076 12.3 0.0 13 5.2 0.0 2.2 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_31 PF13560.1 gi|336253911|ref|YP_004597018.1| - 1.1 9.4 4.0 8.4 6.6 2.7 2.2 1 1 0 1 1 1 0 Helix-turn-helix domain SPW PF03779.9 gi|336253913|ref|YP_004597020.1| - 0.022 14.1 8.3 0.27 10.6 2.7 2.6 2 1 0 2 2 2 0 SPW repeat 7TMR-DISM_7TM PF07695.6 gi|336253913|ref|YP_004597020.1| - 0.035 13.7 0.7 0.16 11.6 0.5 1.7 1 1 1 2 2 2 0 7TM diverse intracellular signalling PhaG_MnhG_YufB PF03334.9 gi|336253913|ref|YP_004597020.1| - 6.1 6.9 7.3 9.5 6.3 1.8 2.2 1 1 1 2 2 2 0 Na+/H+ antiporter subunit Flavi_NS2B PF01002.14 gi|336253913|ref|YP_004597020.1| - 7.8 6.0 6.9 3.3 7.3 1.7 2.2 2 1 0 2 2 2 0 Flavivirus non-structural protein NS2B Usp PF00582.21 gi|336253914|ref|YP_004597021.1| - 4.4e-10 39.8 0.6 5.2e-10 39.6 0.4 1.2 1 0 0 1 1 1 1 Universal stress protein family Na_H_Exchanger PF00999.16 gi|336253915|ref|YP_004597022.1| - 1.7e-53 181.4 51.3 2.2e-53 181.1 35.6 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Usp PF00582.21 gi|336253915|ref|YP_004597022.1| - 7e-09 36.0 0.3 1.7e-08 34.7 0.2 1.6 1 0 0 1 1 1 1 Universal stress protein family AMP-binding PF00501.23 gi|336253916|ref|YP_004597023.1| - 3.7e-92 308.9 0.1 4.5e-92 308.5 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|336253916|ref|YP_004597023.1| - 1.6e-16 60.9 0.1 3.4e-16 59.9 0.0 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain HTH_10 PF04967.7 gi|336253917|ref|YP_004597024.1| - 5.4e-19 67.5 0.0 1.3e-18 66.3 0.0 1.7 1 0 0 1 1 1 1 HTH DNA binding domain PAS_9 PF13426.1 gi|336253917|ref|YP_004597024.1| - 5.7e-16 58.7 0.0 1.4e-15 57.4 0.0 1.7 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.5 gi|336253917|ref|YP_004597024.1| - 4.7e-10 39.4 1.5 2.1e-09 37.3 0.3 2.8 2 0 0 2 2 1 1 PAS fold Phage_integrase PF00589.17 gi|336253917|ref|YP_004597024.1| - 5.3e-10 39.2 0.0 1.2e-09 38.1 0.0 1.5 1 0 0 1 1 1 1 Phage integrase family PAS PF00989.19 gi|336253917|ref|YP_004597024.1| - 7.2e-10 38.6 0.0 3.7e-09 36.3 0.0 2.2 2 0 0 2 2 2 1 PAS fold GAF_2 PF13185.1 gi|336253917|ref|YP_004597024.1| - 3.1e-07 30.9 0.2 1.6e-06 28.7 0.1 2.4 1 1 0 1 1 1 1 GAF domain GAF_3 PF13492.1 gi|336253917|ref|YP_004597024.1| - 0.00071 19.6 0.2 0.005 16.9 0.0 2.5 2 1 1 3 3 3 1 GAF domain GAF PF01590.21 gi|336253917|ref|YP_004597024.1| - 0.0011 19.1 0.0 0.005 16.9 0.0 2.2 1 0 0 1 1 1 1 GAF domain PAS_10 PF13596.1 gi|336253917|ref|YP_004597024.1| - 0.002 18.3 0.0 0.0063 16.7 0.0 1.8 2 0 0 2 2 1 1 PAS domain PAS_8 PF13188.1 gi|336253917|ref|YP_004597024.1| - 0.0072 16.1 0.0 0.028 14.2 0.0 2.1 1 0 0 1 1 1 1 PAS domain HTH_20 PF12840.2 gi|336253917|ref|YP_004597024.1| - 0.009 15.7 0.1 0.047 13.4 0.1 2.3 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|336253917|ref|YP_004597024.1| - 0.017 14.5 0.0 0.054 12.9 0.0 1.8 1 0 0 1 1 1 0 Sigma-70, region 4 Sigma70_r4 PF04545.11 gi|336253917|ref|YP_004597024.1| - 0.021 14.1 0.0 0.059 12.6 0.0 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 Cep57_CLD_2 PF14197.1 gi|336253917|ref|YP_004597024.1| - 0.053 13.4 0.4 0.15 12.0 0.2 1.7 1 0 0 1 1 1 0 Centrosome localisation domain of PPC89 GntR PF00392.16 gi|336253917|ref|YP_004597024.1| - 0.058 12.8 0.4 9.8 5.7 0.0 3.1 3 0 0 3 3 3 0 Bacterial regulatory proteins, gntR family HTH_5 PF01022.15 gi|336253917|ref|YP_004597024.1| - 0.079 12.6 0.0 0.18 11.4 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family GerE PF00196.14 gi|336253917|ref|YP_004597024.1| - 0.085 12.1 0.0 0.27 10.5 0.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family PAS_3 PF08447.6 gi|336253917|ref|YP_004597024.1| - 0.09 12.8 0.1 0.26 11.4 0.0 1.9 1 0 0 1 1 1 0 PAS fold HTH_29 PF13551.1 gi|336253917|ref|YP_004597024.1| - 0.49 10.5 0.0 0.49 10.5 0.0 3.2 4 0 0 4 4 3 0 Winged helix-turn helix AMP-binding PF00501.23 gi|336253918|ref|YP_004597025.1| - 2.8e-94 315.8 0.1 3.3e-94 315.6 0.1 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|336253918|ref|YP_004597025.1| - 6.9e-16 58.9 1.5 1.7e-15 57.7 1.1 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain DUF4212 PF13937.1 gi|336253919|ref|YP_004597026.1| - 6.7e-27 93.3 0.2 8.2e-27 93.0 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4212) SSF PF00474.12 gi|336253920|ref|YP_004597027.1| - 1e-51 175.9 31.1 1.5e-51 175.3 21.6 1.3 1 0 0 1 1 1 1 Sodium:solute symporter family Usp PF00582.21 gi|336253921|ref|YP_004597028.1| - 6.1e-36 123.6 1.6 7e-36 123.4 1.1 1.0 1 0 0 1 1 1 1 Universal stress protein family MGS PF02142.17 gi|336253921|ref|YP_004597028.1| - 0.036 13.9 0.0 0.11 12.4 0.0 1.8 2 0 0 2 2 2 0 MGS-like domain HTH_20 PF12840.2 gi|336253922|ref|YP_004597029.1| - 0.048 13.4 0.1 0.2 11.4 0.1 1.9 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_10 PF04967.7 gi|336253924|ref|YP_004597031.1| - 7.8e-15 54.1 0.1 1.2e-14 53.5 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.11 gi|336253924|ref|YP_004597031.1| - 2.7e-08 32.9 0.1 5.1e-08 32.0 0.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.7 gi|336253924|ref|YP_004597031.1| - 2.1e-05 23.8 0.0 0.0002 20.7 0.0 2.1 2 0 0 2 2 2 1 Sigma-70, region 4 MarR_2 PF12802.2 gi|336253924|ref|YP_004597031.1| - 0.00011 21.8 1.2 0.00041 19.9 0.8 2.0 1 1 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.1 gi|336253924|ref|YP_004597031.1| - 0.0071 16.1 0.0 0.016 15.0 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_24 PF13412.1 gi|336253924|ref|YP_004597031.1| - 0.0094 15.3 0.0 0.018 14.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_23 PF13384.1 gi|336253924|ref|YP_004597031.1| - 0.034 13.8 0.1 0.053 13.1 0.1 1.3 1 0 0 1 1 1 0 Homeodomain-like domain HTH_AsnC-type PF13404.1 gi|336253924|ref|YP_004597031.1| - 0.035 13.6 0.2 0.068 12.7 0.1 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_11 PF08279.7 gi|336253924|ref|YP_004597031.1| - 0.044 13.4 0.0 0.044 13.4 0.0 2.1 3 0 0 3 3 3 0 HTH domain HTH_27 PF13463.1 gi|336253924|ref|YP_004597031.1| - 0.092 13.0 0.1 0.17 12.2 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF2270 PF10028.4 gi|336253926|ref|YP_004597033.1| - 2.7e-66 222.5 6.0 3.2e-66 222.3 4.2 1.0 1 0 0 1 1 1 1 Predicted integral membrane protein (DUF2270) AA_permease_2 PF13520.1 gi|336253926|ref|YP_004597033.1| - 0.0016 17.0 0.2 1 7.8 0.0 2.0 2 0 0 2 2 2 2 Amino acid permease DUF368 PF04018.8 gi|336253926|ref|YP_004597033.1| - 0.08 12.1 0.3 2 7.5 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF368) PepSY_TM_2 PF13703.1 gi|336253926|ref|YP_004597033.1| - 0.48 10.6 4.0 2.1 8.6 0.0 3.2 4 0 0 4 4 4 0 PepSY-associated TM helix DUF4131 PF13567.1 gi|336253926|ref|YP_004597033.1| - 0.5 9.7 4.9 1.6 8.0 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) Autophagy_act_C PF03987.10 gi|336253928|ref|YP_004597035.1| - 0.047 13.8 0.6 3.1 8.0 0.2 2.1 2 0 0 2 2 2 0 Autophagocytosis associated protein, active-site domain DUF2587 PF10759.4 gi|336253928|ref|YP_004597035.1| - 0.054 12.8 0.1 0.067 12.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2587) HTH_10 PF04967.7 gi|336253929|ref|YP_004597036.1| - 1.7e-14 53.1 0.0 2.7e-14 52.4 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.11 gi|336253929|ref|YP_004597036.1| - 1.7e-05 23.9 0.1 3.5e-05 23.0 0.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_AsnC-type PF13404.1 gi|336253929|ref|YP_004597036.1| - 0.03 13.8 0.1 0.061 12.8 0.1 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Cupin_2 PF07883.6 gi|336253932|ref|YP_004597039.1| - 4.9e-17 61.1 0.0 7.3e-17 60.6 0.0 1.3 1 0 0 1 1 1 1 Cupin domain Cupin_3 PF05899.7 gi|336253932|ref|YP_004597039.1| - 7.8e-05 21.9 0.0 0.00015 21.0 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF861) AraC_binding PF02311.14 gi|336253932|ref|YP_004597039.1| - 0.0068 16.0 0.0 0.0096 15.6 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_1 PF00190.17 gi|336253932|ref|YP_004597039.1| - 0.083 12.3 0.0 0.16 11.3 0.0 1.4 1 1 0 1 1 1 0 Cupin Trm56 PF01994.11 gi|336253933|ref|YP_004597040.1| - 3.5e-46 155.8 0.0 4.5e-46 155.5 0.0 1.1 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 Dyp_perox PF04261.7 gi|336253935|ref|YP_004597042.1| - 0.0027 16.4 0.1 0.016 13.9 0.0 2.0 1 1 0 1 1 1 1 Dyp-type peroxidase family TAT_signal PF10518.4 gi|336253935|ref|YP_004597042.1| - 0.012 15.5 3.8 0.037 14.0 2.6 1.9 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF982 PF06169.7 gi|336253935|ref|YP_004597042.1| - 6.6 6.5 6.3 1 9.1 0.4 2.4 3 0 0 3 3 3 0 Protein of unknown function (DUF982) TFIIE_alpha PF02002.12 gi|336253938|ref|YP_004597045.1| - 1.1e-19 69.8 0.1 2.3e-19 68.8 0.1 1.5 2 0 0 2 2 2 1 TFIIE alpha subunit Sigma70_r3 PF04539.11 gi|336253938|ref|YP_004597045.1| - 0.0033 17.2 0.1 0.0072 16.1 0.0 1.6 1 0 0 1 1 1 1 Sigma-70 region 3 DNA_ligase_ZBD PF03119.11 gi|336253938|ref|YP_004597045.1| - 0.0053 16.4 0.3 0.011 15.4 0.2 1.6 1 0 0 1 1 1 1 NAD-dependent DNA ligase C4 zinc finger domain Rad50_zn_hook PF04423.9 gi|336253938|ref|YP_004597045.1| - 0.012 15.0 1.2 0.067 12.6 0.1 2.4 2 0 0 2 2 2 0 Rad50 zinc hook motif TF_Zn_Ribbon PF08271.7 gi|336253938|ref|YP_004597045.1| - 0.033 13.4 1.2 0.73 9.2 0.0 2.8 2 0 0 2 2 2 0 TFIIB zinc-binding zinc-ribbons_6 PF07191.7 gi|336253938|ref|YP_004597045.1| - 0.058 13.1 0.2 0.15 11.8 0.1 1.6 1 1 0 1 1 1 0 zinc-ribbons HTH_20 PF12840.2 gi|336253938|ref|YP_004597045.1| - 0.12 12.1 0.4 0.36 10.6 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain zf-C2H2_6 PF13912.1 gi|336253938|ref|YP_004597045.1| - 0.13 12.2 1.4 2.9 7.9 0.1 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger zf-Mss51 PF13824.1 gi|336253938|ref|YP_004597045.1| - 0.23 11.3 1.5 0.51 10.2 0.5 2.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 DUF2110 PF09883.4 gi|336253939|ref|YP_004597046.1| - 2.9e-90 301.8 0.0 3.4e-90 301.6 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2110) DUF4366 PF14283.1 gi|336253940|ref|YP_004597047.1| - 9.7e-05 21.8 0.0 0.0029 17.0 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF4366) DUF4307 PF14155.1 gi|336253940|ref|YP_004597047.1| - 0.00026 20.7 0.0 0.04 13.6 0.0 2.8 4 0 0 4 4 4 2 Domain of unknown function (DUF4307) CheW PF01584.14 gi|336253941|ref|YP_004597048.1| - 2.6e-14 52.8 0.0 3.1e-14 52.6 0.0 1.0 1 0 0 1 1 1 1 CheW-like domain CheW PF01584.14 gi|336253942|ref|YP_004597049.1| - 2.7e-18 65.7 0.1 4.7e-18 64.9 0.0 1.4 1 0 0 1 1 1 1 CheW-like domain Speriolin_N PF15058.1 gi|336253942|ref|YP_004597049.1| - 0.087 12.7 0.3 0.14 12.0 0.2 1.3 1 0 0 1 1 1 0 Speriolin N terminus Response_reg PF00072.19 gi|336253943|ref|YP_004597050.1| - 3.1e-30 104.4 0.1 3.5e-30 104.2 0.1 1.0 1 0 0 1 1 1 1 Response regulator receiver domain B12-binding PF02310.14 gi|336253943|ref|YP_004597050.1| - 0.023 14.5 0.0 0.028 14.2 0.0 1.2 1 0 0 1 1 1 0 B12 binding domain CheB_methylest PF01339.12 gi|336253944|ref|YP_004597051.1| - 4e-57 192.5 0.4 8.1e-57 191.5 0.3 1.5 1 0 0 1 1 1 1 CheB methylesterase Response_reg PF00072.19 gi|336253944|ref|YP_004597051.1| - 3.5e-24 84.9 0.4 7.3e-24 83.9 0.3 1.5 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.21 gi|336253945|ref|YP_004597052.1| - 1.2e-23 82.8 0.5 3.8e-23 81.3 0.0 2.1 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Hpt PF01627.18 gi|336253945|ref|YP_004597052.1| - 6.7e-20 70.8 0.4 6.7e-20 70.8 0.3 3.8 4 0 0 4 4 4 1 Hpt domain H-kinase_dim PF02895.9 gi|336253945|ref|YP_004597052.1| - 1.2e-09 38.3 6.4 5e-09 36.3 4.5 2.2 1 0 0 1 1 1 1 Signal transducing histidine kinase, homodimeric domain CheW PF01584.14 gi|336253945|ref|YP_004597052.1| - 1.3e-08 34.3 0.8 4.2e-08 32.7 0.5 1.9 1 1 0 1 1 1 1 CheW-like domain P2 PF07194.6 gi|336253945|ref|YP_004597052.1| - 5.3e-08 32.6 0.8 1.2e-06 28.2 0.0 2.9 2 0 0 2 2 2 1 P2 response regulator binding domain HATPase_c_2 PF13581.1 gi|336253945|ref|YP_004597052.1| - 0.0002 21.1 0.3 0.0002 21.1 0.2 3.7 3 0 0 3 3 3 1 Histidine kinase-like ATPase domain Serglycin PF04360.7 gi|336253945|ref|YP_004597052.1| - 0.0021 17.8 1.9 0.0053 16.5 1.3 1.6 1 0 0 1 1 1 1 Serglycin CheC PF04509.7 gi|336253946|ref|YP_004597053.1| - 5.8e-13 48.3 0.0 2.6e-12 46.2 0.0 2.0 2 0 0 2 2 2 1 CheC-like family CheX PF13690.1 gi|336253946|ref|YP_004597053.1| - 8.3e-06 25.5 0.0 1.5e-05 24.7 0.0 1.5 1 0 0 1 1 1 1 Chemotaxis phosphatase CheX CheC PF04509.7 gi|336253947|ref|YP_004597054.1| - 1.2e-17 63.2 0.4 1e-12 47.5 0.0 2.5 2 0 0 2 2 2 2 CheC-like family CheX PF13690.1 gi|336253947|ref|YP_004597054.1| - 1.9e-13 50.0 0.7 6.1e-06 26.0 0.1 2.3 2 0 0 2 2 2 2 Chemotaxis phosphatase CheX CheD PF03975.8 gi|336253948|ref|YP_004597055.1| - 8.7e-32 109.2 0.0 1.1e-31 108.9 0.0 1.1 1 0 0 1 1 1 1 CheD chemotactic sensory transduction CheR PF01739.13 gi|336253949|ref|YP_004597056.1| - 2.1e-49 167.4 0.0 2.9e-49 167.0 0.0 1.2 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain Methyltransf_12 PF08242.7 gi|336253949|ref|YP_004597056.1| - 1.4e-09 38.3 0.1 1.4e-06 28.6 0.0 2.4 1 1 1 2 2 2 2 Methyltransferase domain CheR_N PF03705.10 gi|336253949|ref|YP_004597056.1| - 5.8e-07 28.7 1.3 5.8e-07 28.7 0.9 2.4 3 0 0 3 3 3 1 CheR methyltransferase, all-alpha domain Methyltransf_11 PF08241.7 gi|336253949|ref|YP_004597056.1| - 7.5e-07 29.5 0.1 0.00055 20.3 0.1 2.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|336253949|ref|YP_004597056.1| - 2.5e-06 28.0 0.1 6.2e-06 26.7 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|336253949|ref|YP_004597056.1| - 4e-06 26.5 0.0 0.015 14.8 0.0 2.3 2 0 0 2 2 2 2 Methyltransferase domain Methyltransf_25 PF13649.1 gi|336253949|ref|YP_004597056.1| - 9.3e-06 25.9 0.1 0.00014 22.1 0.0 2.5 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|336253949|ref|YP_004597056.1| - 0.0085 15.8 0.0 0.015 15.0 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain NodS PF05401.6 gi|336253949|ref|YP_004597056.1| - 0.032 13.6 0.0 0.048 13.0 0.0 1.3 1 0 0 1 1 1 0 Nodulation protein S (NodS) DUF1690 PF07956.6 gi|336253949|ref|YP_004597056.1| - 0.048 13.6 0.1 0.08 12.9 0.1 1.3 1 0 0 1 1 1 0 Protein of Unknown function (DUF1690) TMEM171 PF15471.1 gi|336253951|ref|YP_004597058.1| - 0.02 13.7 0.0 0.031 13.0 0.0 1.2 1 0 0 1 1 1 0 Transmembrane protein family 171 EF-hand_5 PF13202.1 gi|336253952|ref|YP_004597059.1| - 0.16 11.3 1.2 0.27 10.6 0.1 1.9 2 0 0 2 2 2 0 EF hand Nramp PF01566.13 gi|336253954|ref|YP_004597061.1| - 0.0067 15.2 0.0 0.0086 14.9 0.0 1.1 1 0 0 1 1 1 1 Natural resistance-associated macrophage protein RskA PF10099.4 gi|336253954|ref|YP_004597061.1| - 0.06 13.0 0.0 0.096 12.4 0.0 1.3 1 0 0 1 1 1 0 Anti-sigma-K factor rskA DUF1918 PF08940.6 gi|336253954|ref|YP_004597061.1| - 0.095 12.0 0.0 0.36 10.2 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF1918) PXT1 PF15214.1 gi|336253954|ref|YP_004597061.1| - 0.14 12.4 0.1 0.27 11.5 0.1 1.4 1 0 0 1 1 1 0 Peroxisomal testis-specific protein 1 T2SF PF00482.18 gi|336253956|ref|YP_004597063.1| - 7.2e-26 90.5 11.9 4e-14 52.5 0.4 3.1 3 0 0 3 3 3 2 Type II secretion system (T2SS), protein F T2SE PF00437.15 gi|336253957|ref|YP_004597064.1| - 3e-44 150.9 0.0 4.7e-44 150.3 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|336253957|ref|YP_004597064.1| - 0.00017 21.0 0.1 0.00034 20.0 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain MttA_Hcf106 PF02416.11 gi|336253958|ref|YP_004597065.1| - 3.7e-14 51.5 2.1 4.2e-14 51.3 1.5 1.3 1 1 0 1 1 1 1 mttA/Hcf106 family Osteopontin PF00865.13 gi|336253958|ref|YP_004597065.1| - 0.014 14.7 6.2 0.015 14.5 4.3 1.1 1 0 0 1 1 1 0 Osteopontin AhpC-TSA PF00578.16 gi|336253959|ref|YP_004597066.1| - 3.9e-31 107.3 0.0 4.6e-31 107.0 0.0 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|336253959|ref|YP_004597066.1| - 2.2e-21 75.9 0.0 2.5e-21 75.7 0.0 1.0 1 0 0 1 1 1 1 Redoxin DUF899 PF05988.7 gi|336253959|ref|YP_004597066.1| - 0.0037 16.7 0.0 0.005 16.2 0.0 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF899) Varsurf_PPLC PF03490.8 gi|336253959|ref|YP_004597066.1| - 0.031 13.9 0.0 0.9 9.2 0.0 2.3 2 0 0 2 2 2 0 Variant-surface-glycoprotein phospholipase C HD PF01966.17 gi|336253960|ref|YP_004597067.1| - 4.8e-09 36.2 3.1 8.1e-09 35.5 2.1 1.5 1 0 0 1 1 1 1 HD domain TrmB PF01978.14 gi|336253961|ref|YP_004597068.1| - 6.9e-06 25.6 0.1 8.4e-06 25.4 0.0 1.1 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|336253961|ref|YP_004597068.1| - 0.0036 16.8 0.2 0.0061 16.1 0.1 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|336253961|ref|YP_004597068.1| - 0.004 16.8 0.1 0.005 16.4 0.0 1.2 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|336253961|ref|YP_004597068.1| - 0.0087 15.7 0.0 0.012 15.2 0.0 1.2 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.15 gi|336253961|ref|YP_004597068.1| - 0.019 15.0 0.0 0.024 14.7 0.0 1.1 1 0 0 1 1 1 0 Transcriptional regulator HTH_36 PF13730.1 gi|336253961|ref|YP_004597068.1| - 0.022 14.8 0.0 0.029 14.4 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_42 PF06224.7 gi|336253961|ref|YP_004597068.1| - 0.028 13.7 0.0 0.028 13.7 0.0 1.0 1 0 0 1 1 1 0 Winged helix DNA-binding domain Penicillinase_R PF03965.11 gi|336253961|ref|YP_004597068.1| - 0.051 13.6 0.0 0.06 13.4 0.0 1.1 1 0 0 1 1 1 0 Penicillinase repressor HTH_27 PF13463.1 gi|336253961|ref|YP_004597068.1| - 0.099 12.9 0.0 0.12 12.6 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF1427 PF07235.6 gi|336253962|ref|YP_004597069.1| - 1.2e-05 25.3 1.8 1.3e-05 25.1 1.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1427) FAD_binding_2 PF00890.19 gi|336253964|ref|YP_004597071.1| - 1.6e-121 406.0 8.4 2.5e-121 405.4 5.8 1.3 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.15 gi|336253964|ref|YP_004597071.1| - 3.4e-39 133.6 0.2 5.6e-39 132.9 0.1 1.4 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term DAO PF01266.19 gi|336253964|ref|YP_004597071.1| - 8.5e-08 31.4 4.4 9.9e-06 24.6 3.0 2.4 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|336253964|ref|YP_004597071.1| - 1.4e-07 31.5 14.6 3.1e-05 23.9 10.1 3.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|336253964|ref|YP_004597071.1| - 0.00076 18.0 0.5 0.00076 18.0 0.4 2.0 2 0 0 2 2 2 1 HI0933-like protein GIDA PF01134.17 gi|336253964|ref|YP_004597071.1| - 0.0012 17.7 4.4 0.0024 16.8 3.0 1.5 1 0 0 1 1 1 1 Glucose inhibited division protein A FAD_binding_3 PF01494.14 gi|336253964|ref|YP_004597071.1| - 0.0036 16.4 1.0 0.0085 15.1 0.7 1.6 1 0 0 1 1 1 1 FAD binding domain Thi4 PF01946.12 gi|336253964|ref|YP_004597071.1| - 0.0036 16.4 3.0 0.02 13.9 0.3 2.7 3 0 0 3 3 3 1 Thi4 family AlaDh_PNT_C PF01262.16 gi|336253964|ref|YP_004597071.1| - 0.011 15.3 0.1 0.019 14.5 0.1 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain FAD_oxidored PF12831.2 gi|336253964|ref|YP_004597071.1| - 0.049 12.7 11.2 0.13 11.2 7.7 1.9 1 1 0 1 1 1 0 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|336253964|ref|YP_004597071.1| - 0.97 9.4 4.4 0.71 9.8 0.5 2.2 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Fer2_3 PF13085.1 gi|336253965|ref|YP_004597072.1| - 6e-33 112.9 0.1 4.1e-32 110.2 0.0 2.1 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer4_8 PF13183.1 gi|336253965|ref|YP_004597072.1| - 2.4e-11 43.4 3.7 5.4e-11 42.3 2.6 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|336253965|ref|YP_004597072.1| - 3.1e-06 27.4 2.3 4.5e-06 26.9 0.3 2.3 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|336253965|ref|YP_004597072.1| - 3.9e-06 27.0 3.5 3.9e-06 27.0 0.6 2.3 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|336253965|ref|YP_004597072.1| - 4.3e-06 26.9 4.2 1.2e-05 25.5 2.9 1.9 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|336253965|ref|YP_004597072.1| - 8.2e-06 26.1 5.1 0.013 15.9 0.1 2.6 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|336253965|ref|YP_004597072.1| - 0.0004 20.1 8.4 0.0022 17.7 5.8 2.2 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|336253965|ref|YP_004597072.1| - 0.0055 16.5 1.1 0.0055 16.5 0.7 2.7 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_16 PF13484.1 gi|336253965|ref|YP_004597072.1| - 0.0071 17.0 5.6 0.25 12.1 0.5 2.8 3 0 0 3 3 2 1 4Fe-4S double cluster binding domain Fer4_20 PF14691.1 gi|336253965|ref|YP_004597072.1| - 0.012 15.1 6.1 0.52 9.9 0.3 2.7 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_6 PF12837.2 gi|336253965|ref|YP_004597072.1| - 0.26 11.2 9.6 0.28 11.1 1.6 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4 PF00037.22 gi|336253965|ref|YP_004597072.1| - 0.86 9.3 9.5 2.7 7.7 2.0 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|336253965|ref|YP_004597072.1| - 7.5 7.2 10.8 8.6 7.0 0.2 3.8 4 1 0 4 4 3 0 4Fe-4S single cluster domain Fer4_4 PF12800.2 gi|336253965|ref|YP_004597072.1| - 7.9 7.0 13.4 1 9.9 1.1 2.8 3 0 0 3 3 2 0 4Fe-4S binding domain Sdh_cyt PF01127.17 gi|336253966|ref|YP_004597073.1| - 8.2e-12 45.0 6.1 1.1e-11 44.6 4.3 1.1 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Tmemb_18A PF09771.4 gi|336253966|ref|YP_004597073.1| - 0.057 13.3 2.1 0.1 12.5 1.5 1.4 1 1 0 1 1 1 0 Transmembrane protein 188 DUF4536 PF15055.1 gi|336253966|ref|YP_004597073.1| - 0.3 11.1 3.2 0.41 10.7 1.2 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4536) Sdh_cyt PF01127.17 gi|336253967|ref|YP_004597074.1| - 1.6e-20 73.1 4.0 1.9e-20 72.8 2.8 1.1 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Ferric_reduct PF01794.14 gi|336253967|ref|YP_004597074.1| - 0.019 15.0 4.1 0.028 14.4 2.8 1.4 1 1 0 1 1 1 0 Ferric reductase like transmembrane component AstE_AspA PF04952.9 gi|336253968|ref|YP_004597075.1| - 6.1e-66 222.2 0.0 7.8e-66 221.9 0.0 1.0 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family Acetyltransf_1 PF00583.19 gi|336253969|ref|YP_004597076.1| - 2.3e-09 37.1 0.1 4.2e-09 36.3 0.1 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|336253969|ref|YP_004597076.1| - 2e-08 34.3 0.0 3.1e-08 33.7 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|336253969|ref|YP_004597076.1| - 4.2e-08 33.2 0.0 9.7e-08 32.0 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|336253969|ref|YP_004597076.1| - 5.1e-06 26.3 0.0 1e-05 25.4 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|336253969|ref|YP_004597076.1| - 0.0001 22.4 0.0 0.00029 21.0 0.0 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|336253969|ref|YP_004597076.1| - 0.00038 20.1 0.0 0.0012 18.5 0.0 1.8 2 0 0 2 2 2 1 FR47-like protein Acetyltransf_4 PF13420.1 gi|336253969|ref|YP_004597076.1| - 0.001 19.0 0.0 0.0019 18.1 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|336253969|ref|YP_004597076.1| - 0.0054 16.6 0.0 0.0097 15.7 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|336253969|ref|YP_004597076.1| - 0.01 15.7 2.0 0.11 12.5 0.2 2.1 1 1 1 2 2 2 0 Acetyltransferase (GNAT) domain Polysacc_synt PF01943.12 gi|336253970|ref|YP_004597077.1| - 4.9e-30 104.7 13.5 4.9e-30 104.7 9.3 2.2 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|336253970|ref|YP_004597077.1| - 5.1e-20 71.7 20.8 5.1e-20 71.7 14.4 3.9 2 1 1 3 3 3 2 Polysaccharide biosynthesis C-terminal domain Polysacc_synt_3 PF13440.1 gi|336253970|ref|YP_004597077.1| - 2.1e-12 47.0 47.4 9.2e-12 44.9 13.6 2.1 1 1 1 2 2 2 2 Polysaccharide biosynthesis protein MatE PF01554.13 gi|336253970|ref|YP_004597077.1| - 8.6e-07 28.7 13.3 7.5e-06 25.6 0.5 4.0 2 2 3 5 5 5 2 MatE MVIN PF03023.9 gi|336253970|ref|YP_004597077.1| - 3.4e-05 22.4 17.4 0.00013 20.5 2.0 2.7 2 1 0 2 2 2 2 MviN-like protein Mn_catalase PF05067.7 gi|336253972|ref|YP_004597079.1| - 2.9e-80 269.0 0.1 3.5e-80 268.8 0.0 1.0 1 0 0 1 1 1 1 Manganese containing catalase Rubrerythrin PF02915.12 gi|336253972|ref|YP_004597079.1| - 0.0037 17.5 0.2 0.022 15.0 0.1 2.0 2 1 0 2 2 2 1 Rubrerythrin Ferritin PF00210.19 gi|336253972|ref|YP_004597079.1| - 0.0076 16.0 0.8 0.022 14.5 0.4 2.0 1 1 1 2 2 2 1 Ferritin-like domain Ferritin-like PF12902.2 gi|336253972|ref|YP_004597079.1| - 0.017 14.7 0.2 0.025 14.1 0.1 1.3 1 0 0 1 1 1 0 Ferritin-like RimK PF08443.6 gi|336253973|ref|YP_004597080.1| - 5.6e-28 97.7 0.0 8.8e-28 97.0 0.0 1.3 1 0 0 1 1 1 1 RimK-like ATP-grasp domain Zn_protease PF05618.6 gi|336253973|ref|YP_004597080.1| - 2.7e-10 40.0 0.7 6.4e-08 32.3 0.1 2.3 1 1 1 2 2 2 2 Putative ATP-dependant zinc protease GSH-S_ATP PF02955.11 gi|336253973|ref|YP_004597080.1| - 5.7e-09 35.3 0.0 9.9e-09 34.5 0.0 1.4 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_4 PF13535.1 gi|336253973|ref|YP_004597080.1| - 3.4e-08 33.4 0.0 8.6e-08 32.1 0.0 1.7 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|336253973|ref|YP_004597080.1| - 2.7e-07 30.6 0.0 9e-07 28.8 0.0 1.9 2 0 0 2 2 2 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|336253973|ref|YP_004597080.1| - 0.00064 18.5 0.0 0.12 11.0 0.0 2.2 2 0 0 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon DUF4343 PF14243.1 gi|336253973|ref|YP_004597080.1| - 0.0031 17.3 0.1 0.007 16.2 0.1 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4343) Asp_protease_2 PF13650.1 gi|336253973|ref|YP_004597080.1| - 0.0056 17.1 2.1 0.015 15.8 0.6 2.4 3 0 0 3 3 3 1 Aspartyl protease RVP PF00077.15 gi|336253973|ref|YP_004597080.1| - 0.02 14.7 0.1 0.038 13.9 0.0 1.5 1 0 0 1 1 1 0 Retroviral aspartyl protease PRC PF05239.11 gi|336253974|ref|YP_004597081.1| - 8.2e-10 38.4 0.0 9.9e-10 38.1 0.0 1.1 1 0 0 1 1 1 1 PRC-barrel domain peroxidase PF00141.18 gi|336253975|ref|YP_004597082.1| - 4.9e-90 301.0 0.0 2.1e-51 174.6 0.0 2.2 2 0 0 2 2 2 2 Peroxidase HhH-GPD PF00730.20 gi|336253977|ref|YP_004597084.1| - 2e-15 56.9 0.0 2.7e-15 56.5 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH_5 PF14520.1 gi|336253977|ref|YP_004597084.1| - 0.013 15.6 0.1 0.042 14.0 0.1 1.9 1 1 0 1 1 1 0 Helix-hairpin-helix domain DUF1127 PF06568.6 gi|336253977|ref|YP_004597084.1| - 0.021 14.2 1.7 0.63 9.5 0.1 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF1127) DUF2238 PF09997.4 gi|336253978|ref|YP_004597085.1| - 3.1e-05 23.3 2.0 0.00082 18.7 1.4 2.2 1 1 0 1 1 1 1 Predicted membrane protein (DUF2238) TauE PF01925.14 gi|336253979|ref|YP_004597086.1| - 0.089 12.2 18.2 0.11 11.9 12.6 1.1 1 0 0 1 1 1 0 Sulfite exporter TauE/SafE DUF457 PF04307.9 gi|336253980|ref|YP_004597087.1| - 9e-08 31.6 16.5 2.4e-07 30.2 10.4 2.0 1 1 1 2 2 2 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) Zn_dep_PLPC PF00882.13 gi|336253980|ref|YP_004597087.1| - 0.009 15.6 0.1 0.013 15.1 0.1 1.2 1 0 0 1 1 1 1 Zinc dependent phospholipase C EmrE PF13536.1 gi|336253981|ref|YP_004597088.1| - 0.12 12.6 2.7 0.15 12.2 1.8 1.1 1 0 0 1 1 1 0 Multidrug resistance efflux transporter Acyl-CoA_dh_1 PF00441.19 gi|336253982|ref|YP_004597089.1| - 6.5e-53 178.8 3.6 1e-52 178.2 2.5 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|336253982|ref|YP_004597089.1| - 2.2e-34 118.4 0.1 7.4e-34 116.7 0.1 1.9 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.6 gi|336253982|ref|YP_004597089.1| - 1.3e-26 93.4 4.6 2.1e-26 92.7 3.2 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|336253982|ref|YP_004597089.1| - 3.2e-21 74.5 0.1 6.5e-21 73.5 0.1 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain HpaB PF03241.8 gi|336253982|ref|YP_004597089.1| - 0.022 13.6 0.0 0.038 12.8 0.0 1.4 1 0 0 1 1 1 0 4-hydroxyphenylacetate 3-hydroxylase C terminal Acetyltransf_CG PF14542.1 gi|336253982|ref|YP_004597089.1| - 0.08 12.8 0.2 0.28 11.1 0.0 2.0 2 0 0 2 2 2 0 GCN5-related N-acetyl-transferase 3HCDH_N PF02737.13 gi|336253983|ref|YP_004597090.1| - 3.5e-68 228.8 1.8 5.2e-68 228.2 1.3 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ECH PF00378.15 gi|336253983|ref|YP_004597090.1| - 5.5e-63 212.3 0.0 1.1e-62 211.3 0.0 1.4 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family 3HCDH PF00725.17 gi|336253983|ref|YP_004597090.1| - 1.7e-50 169.3 1.1 1.9e-31 108.3 0.0 3.7 3 0 0 3 3 3 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_Gly3P_dh_N PF01210.18 gi|336253983|ref|YP_004597090.1| - 1.3e-11 44.5 0.1 2.2e-11 43.7 0.1 1.4 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_2 PF03446.10 gi|336253983|ref|YP_004597090.1| - 2.9e-07 30.4 1.7 5.7e-07 29.5 0.4 2.0 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|336253983|ref|YP_004597090.1| - 3.4e-05 24.1 3.9 9.6e-05 22.7 1.7 2.5 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent AlaDh_PNT_C PF01262.16 gi|336253983|ref|YP_004597090.1| - 0.007 15.9 0.2 0.017 14.6 0.1 1.6 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Malic_M PF03949.10 gi|336253983|ref|YP_004597090.1| - 0.0086 15.6 0.6 0.015 14.8 0.4 1.3 1 0 0 1 1 1 1 Malic enzyme, NAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|336253983|ref|YP_004597090.1| - 0.019 14.3 0.1 0.032 13.5 0.1 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain XdhC_C PF13478.1 gi|336253983|ref|YP_004597090.1| - 0.024 14.9 0.1 0.057 13.7 0.1 1.7 1 1 0 1 1 1 0 XdhC Rossmann domain 2-Hacid_dh_C PF02826.14 gi|336253983|ref|YP_004597090.1| - 0.08 12.0 4.3 0.62 9.1 1.5 2.7 2 1 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ECH_C PF13766.1 gi|336253983|ref|YP_004597090.1| - 0.084 13.0 0.4 0.39 10.8 0.0 2.3 3 0 0 3 3 2 0 2-enoyl-CoA Hydratase C-terminal region NAD_binding_7 PF13241.1 gi|336253983|ref|YP_004597090.1| - 0.13 12.5 0.2 0.33 11.2 0.1 1.6 1 0 0 1 1 1 0 Putative NAD(P)-binding IlvN PF07991.7 gi|336253983|ref|YP_004597090.1| - 0.27 10.5 5.8 5.1 6.4 4.1 2.2 1 1 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain HalX PF08663.5 gi|336253984|ref|YP_004597091.1| - 5.3e-21 74.3 4.8 1.2e-20 73.2 3.3 1.6 1 0 0 1 1 1 1 HalX domain Response_reg PF00072.19 gi|336253984|ref|YP_004597091.1| - 1.9e-20 72.9 0.6 2.6e-20 72.5 0.1 1.5 2 0 0 2 2 2 1 Response regulator receiver domain Sec34 PF04136.10 gi|336253984|ref|YP_004597091.1| - 0.059 13.0 0.4 0.1 12.3 0.3 1.5 1 0 0 1 1 1 0 Sec34-like family UBA PF00627.26 gi|336253984|ref|YP_004597091.1| - 0.12 12.3 0.7 44 4.1 0.0 3.9 4 0 0 4 4 4 0 UBA/TS-N domain DUF772 PF05598.6 gi|336253984|ref|YP_004597091.1| - 0.15 12.0 0.1 0.35 10.7 0.0 1.7 2 0 0 2 2 2 0 Transposase domain (DUF772) MtrG PF04210.8 gi|336253984|ref|YP_004597091.1| - 0.15 11.7 0.4 0.37 10.4 0.1 1.7 2 0 0 2 2 2 0 Tetrahydromethanopterin S-methyltransferase, subunit G SPW PF03779.9 gi|336253985|ref|YP_004597092.1| - 3.7e-11 42.2 7.3 3.9e-05 22.9 1.9 2.3 2 0 0 2 2 2 2 SPW repeat 7TMR-DISM_7TM PF07695.6 gi|336253985|ref|YP_004597092.1| - 0.004 16.8 2.5 0.035 13.7 0.1 1.9 1 1 1 2 2 2 2 7TM diverse intracellular signalling UPF0197 PF05251.7 gi|336253985|ref|YP_004597092.1| - 0.039 14.2 0.6 4.1 7.7 0.0 2.5 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0197) Exosortase_EpsH PF09721.5 gi|336253985|ref|YP_004597092.1| - 0.13 11.5 4.9 0.21 10.7 3.5 1.3 1 1 0 1 1 1 0 Transmembrane exosortase (Exosortase_EpsH) PhaG_MnhG_YufB PF03334.9 gi|336253985|ref|YP_004597092.1| - 0.22 11.6 5.3 0.39 10.7 1.4 2.0 2 0 0 2 2 2 0 Na+/H+ antiporter subunit Cation_efflux PF01545.16 gi|336253985|ref|YP_004597092.1| - 1 8.3 5.2 0.5 9.3 0.3 1.9 1 1 1 2 2 2 0 Cation efflux family Acyl-CoA_dh_1 PF00441.19 gi|336253986|ref|YP_004597093.1| - 1.5e-40 138.7 5.5 1.5e-40 138.7 2.7 1.8 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|336253986|ref|YP_004597093.1| - 1.6e-24 86.6 0.6 4.3e-24 85.2 0.4 1.8 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.14 gi|336253986|ref|YP_004597093.1| - 3.4e-22 77.7 1.0 6e-22 76.9 0.2 1.9 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|336253986|ref|YP_004597093.1| - 2.6e-13 50.3 7.4 4.6e-13 49.5 5.1 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Mor PF08765.6 gi|336253986|ref|YP_004597093.1| - 0.11 12.3 0.0 6 6.6 0.0 2.5 2 0 0 2 2 2 0 Mor transcription activator family HTH_10 PF04967.7 gi|336253987|ref|YP_004597094.1| - 8.8e-15 54.0 0.0 1.4e-14 53.3 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.11 gi|336253987|ref|YP_004597094.1| - 5.9e-06 25.4 0.1 1.3e-05 24.3 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_AsnC-type PF13404.1 gi|336253987|ref|YP_004597094.1| - 0.00018 21.0 0.1 0.00034 20.1 0.0 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.2 gi|336253987|ref|YP_004597094.1| - 0.00055 19.5 0.0 0.00096 18.7 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|336253987|ref|YP_004597094.1| - 0.00058 19.1 0.0 0.001 18.4 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Sigma70_r4_2 PF08281.7 gi|336253987|ref|YP_004597094.1| - 0.0085 15.5 0.0 0.089 12.2 0.0 2.2 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_11 PF08279.7 gi|336253987|ref|YP_004597094.1| - 0.084 12.5 0.0 0.19 11.4 0.0 1.6 1 0 0 1 1 1 0 HTH domain UPF0122 PF04297.9 gi|336253987|ref|YP_004597094.1| - 0.17 11.8 0.0 0.29 11.1 0.0 1.3 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like HATPase_c PF02518.21 gi|336253988|ref|YP_004597095.1| - 1.3e-27 95.6 0.0 2.9e-27 94.6 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|336253988|ref|YP_004597095.1| - 8.2e-11 41.7 3.2 1.8e-10 40.6 0.0 2.8 2 1 1 3 3 3 1 His Kinase A (phospho-acceptor) domain HATPase_c_2 PF13581.1 gi|336253988|ref|YP_004597095.1| - 0.0053 16.5 0.1 0.0053 16.5 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.1 gi|336253988|ref|YP_004597095.1| - 0.0074 15.9 0.0 3.2 7.5 0.0 2.3 2 0 0 2 2 2 2 GHKL domain DUF904 PF06005.7 gi|336253988|ref|YP_004597095.1| - 0.12 12.7 2.5 0.23 11.7 1.7 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF904) TMCO5 PF14992.1 gi|336253988|ref|YP_004597095.1| - 0.49 9.4 2.5 0.92 8.5 1.4 1.6 2 0 0 2 2 2 0 TMCO5 family DUF457 PF04307.9 gi|336253989|ref|YP_004597096.1| - 0.047 13.0 8.2 0.06 12.6 5.7 1.1 1 0 0 1 1 1 0 Predicted membrane-bound metal-dependent hydrolase (DUF457) Cupin_2 PF07883.6 gi|336253990|ref|YP_004597097.1| - 6.3e-13 48.0 0.2 8.6e-13 47.5 0.1 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|336253990|ref|YP_004597097.1| - 6.6e-06 25.8 0.0 8.5e-06 25.4 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_3 PF05899.7 gi|336253990|ref|YP_004597097.1| - 0.00035 19.8 0.0 0.00055 19.2 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF861) EutQ PF06249.7 gi|336253990|ref|YP_004597097.1| - 0.00038 20.0 0.0 0.00046 19.7 0.0 1.2 1 0 0 1 1 1 1 Ethanolamine utilisation protein EutQ Cupin_6 PF12852.2 gi|336253990|ref|YP_004597097.1| - 0.001 18.7 0.0 0.0013 18.3 0.0 1.3 1 1 0 1 1 1 1 Cupin MannoseP_isomer PF01050.13 gi|336253990|ref|YP_004597097.1| - 0.0038 16.8 0.0 0.0048 16.5 0.0 1.2 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase KduI PF04962.7 gi|336253990|ref|YP_004597097.1| - 0.0072 15.4 0.0 0.0092 15.0 0.0 1.2 1 0 0 1 1 1 1 KduI/IolB family AraC_binding_2 PF14525.1 gi|336253990|ref|YP_004597097.1| - 0.011 15.3 0.0 0.013 15.0 0.0 1.1 1 0 0 1 1 1 0 AraC-binding-like domain CENP-C_C PF11699.3 gi|336253990|ref|YP_004597097.1| - 0.013 15.4 0.0 0.018 14.9 0.0 1.2 1 0 0 1 1 1 0 Mif2/CENP-C like Pirin_C PF05726.8 gi|336253990|ref|YP_004597097.1| - 0.017 15.1 0.0 0.023 14.7 0.0 1.2 1 0 0 1 1 1 0 Pirin C-terminal cupin domain GPI PF06560.6 gi|336253990|ref|YP_004597097.1| - 0.017 14.1 0.0 0.026 13.5 0.0 1.3 1 0 0 1 1 1 0 Glucose-6-phosphate isomerase (GPI) FdtA PF05523.6 gi|336253990|ref|YP_004597097.1| - 0.02 14.3 0.0 0.028 13.9 0.0 1.3 1 0 0 1 1 1 0 WxcM-like, C-terminal Cupin_1 PF00190.17 gi|336253990|ref|YP_004597097.1| - 0.042 13.2 0.0 0.051 13.0 0.0 1.1 1 0 0 1 1 1 0 Cupin NikR_C PF08753.6 gi|336253991|ref|YP_004597098.1| - 6.9e-20 70.7 1.3 9.3e-20 70.3 0.9 1.2 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.16 gi|336253991|ref|YP_004597098.1| - 2e-06 27.4 0.0 3.1e-06 26.8 0.0 1.3 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family Creatininase PF02633.9 gi|336253992|ref|YP_004597099.1| - 7.7e-65 218.2 1.1 8.6e-65 218.1 0.7 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase TM_helix PF05552.7 gi|336253993|ref|YP_004597100.1| - 9.8e-20 69.9 4.2 4.7e-13 48.5 0.1 2.7 2 0 0 2 2 2 2 Conserved TM helix HAMP PF00672.20 gi|336253993|ref|YP_004597100.1| - 1.1 9.5 12.3 1 9.5 1.0 3.4 4 0 0 4 4 4 0 HAMP domain Abhydrolase_9_N PF15420.1 gi|336253993|ref|YP_004597100.1| - 6.6 6.4 15.4 3.9 7.1 0.1 3.3 2 1 1 3 3 3 0 Alpha/beta-hydrolase family N-terminus DUF3188 PF11384.3 gi|336253993|ref|YP_004597100.1| - 8.7 6.0 8.5 0.26 10.9 0.5 2.4 3 0 0 3 3 3 0 Protein of unknown function (DUF3188) PAS_4 PF08448.5 gi|336253996|ref|YP_004597103.1| - 1.3e-36 125.0 19.8 3.2e-14 52.8 0.1 5.0 6 0 0 6 6 5 4 PAS fold PAS_9 PF13426.1 gi|336253996|ref|YP_004597103.1| - 1.8e-33 114.9 0.6 3.2e-10 40.2 0.0 5.0 5 0 0 5 5 4 4 PAS domain HATPase_c PF02518.21 gi|336253996|ref|YP_004597103.1| - 9.8e-30 102.5 0.1 2.2e-29 101.3 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.19 gi|336253996|ref|YP_004597103.1| - 1.5e-27 95.5 0.4 1.5e-07 31.1 0.0 5.3 4 1 0 4 4 4 3 PAS fold PAS_8 PF13188.1 gi|336253996|ref|YP_004597103.1| - 1.9e-20 71.9 0.9 2.8e-06 26.9 0.0 5.0 4 0 0 4 4 4 3 PAS domain PAS_7 PF12860.2 gi|336253996|ref|YP_004597103.1| - 6.3e-14 51.9 2.6 3.2e-06 27.1 0.0 5.7 4 2 1 5 5 5 2 PAS fold GAF_3 PF13492.1 gi|336253996|ref|YP_004597103.1| - 2.8e-12 46.8 0.0 2.2e-11 43.9 0.0 2.5 3 0 0 3 3 3 1 GAF domain HisKA PF00512.20 gi|336253996|ref|YP_004597103.1| - 3.1e-12 46.2 0.2 3.1e-12 46.2 0.2 2.9 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain GAF_2 PF13185.1 gi|336253996|ref|YP_004597103.1| - 1.3e-07 32.2 2.9 1.7e-07 31.8 0.1 2.8 4 0 0 4 4 2 1 GAF domain HATPase_c_5 PF14501.1 gi|336253996|ref|YP_004597103.1| - 8.2e-06 25.4 0.0 1.5e-05 24.6 0.0 1.4 1 0 0 1 1 1 1 GHKL domain HATPase_c_2 PF13581.1 gi|336253996|ref|YP_004597103.1| - 2.5e-05 24.0 0.1 8.8e-05 22.2 0.1 2.0 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.1 gi|336253996|ref|YP_004597103.1| - 0.0079 15.8 0.0 0.016 14.8 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_11 PF14598.1 gi|336253996|ref|YP_004597103.1| - 0.019 14.9 0.0 0.043 13.7 0.0 1.6 1 0 0 1 1 1 0 PAS domain PAS_3 PF08447.6 gi|336253996|ref|YP_004597103.1| - 0.02 14.9 0.9 1.6 8.8 0.0 3.9 4 1 0 4 4 3 0 PAS fold PAS_10 PF13596.1 gi|336253996|ref|YP_004597103.1| - 0.061 13.5 0.0 4.9 7.4 0.0 3.2 3 0 0 3 3 3 0 PAS domain DUF4293 PF14126.1 gi|336253997|ref|YP_004597104.1| - 0.0065 16.4 0.4 0.0089 15.9 0.2 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4293) YjgP_YjgQ PF03739.9 gi|336253997|ref|YP_004597104.1| - 0.079 11.6 0.4 0.099 11.3 0.3 1.1 1 0 0 1 1 1 0 Predicted permease YjgP/YjgQ family Methyltransf_3 PF01596.12 gi|336253998|ref|YP_004597105.1| - 1.8e-24 85.9 0.0 2.4e-24 85.5 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_24 PF13578.1 gi|336253998|ref|YP_004597105.1| - 5.7e-14 52.8 0.0 1e-13 52.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|336253998|ref|YP_004597105.1| - 7.5e-08 32.9 0.0 1.2e-07 32.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|336253998|ref|YP_004597105.1| - 5e-07 29.4 0.0 6.4e-07 29.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|336253998|ref|YP_004597105.1| - 1.9e-06 27.9 0.0 4e-06 26.8 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|336253998|ref|YP_004597105.1| - 3.6e-05 23.2 0.0 8.9e-05 21.9 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.1 gi|336253998|ref|YP_004597105.1| - 0.0024 18.1 0.0 0.0045 17.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|336253998|ref|YP_004597105.1| - 0.0091 15.5 0.0 0.013 15.0 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_12 PF08242.7 gi|336253998|ref|YP_004597105.1| - 0.01 16.3 0.0 0.021 15.2 0.0 1.6 2 0 0 2 2 2 0 Methyltransferase domain DUF938 PF06080.7 gi|336253998|ref|YP_004597105.1| - 0.12 11.9 0.0 0.16 11.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF938) ROK PF00480.15 gi|336254000|ref|YP_004597107.1| - 9.7e-28 97.1 0.4 1.5e-27 96.6 0.2 1.3 1 0 0 1 1 1 1 ROK family BcrAD_BadFG PF01869.15 gi|336254000|ref|YP_004597107.1| - 0.00016 21.0 0.5 0.0069 15.7 0.1 2.1 2 0 0 2 2 2 2 BadF/BadG/BcrA/BcrD ATPase family FGGY_N PF00370.16 gi|336254000|ref|YP_004597107.1| - 0.067 12.4 0.1 0.2 10.9 0.0 1.7 1 1 0 1 1 1 0 FGGY family of carbohydrate kinases, N-terminal domain ScdA_N PF04405.9 gi|336254000|ref|YP_004597107.1| - 0.11 11.8 0.0 0.32 10.4 0.0 1.8 1 0 0 1 1 1 0 Domain of Unknown function (DUF542) LVIVD PF08309.6 gi|336254001|ref|YP_004597108.1| - 4.9e-22 76.6 0.7 4e-06 25.7 0.0 6.4 6 0 0 6 6 6 6 LVIVD repeat Beta_propel PF09826.4 gi|336254001|ref|YP_004597108.1| - 9.5e-07 27.5 0.0 0.037 12.3 0.0 4.5 4 1 0 4 4 4 2 Beta propeller domain SBP56 PF05694.6 gi|336254001|ref|YP_004597108.1| - 0.012 14.1 0.1 4.9 5.5 0.0 3.6 3 1 0 4 4 4 0 56kDa selenium binding protein (SBP56) Pyridox_oxidase PF01243.15 gi|336254002|ref|YP_004597109.1| - 1.3e-19 69.9 0.0 1.8e-19 69.4 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_ox_2 PF12900.2 gi|336254002|ref|YP_004597109.1| - 1.5e-10 41.0 0.2 1.9e-10 40.7 0.1 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase KH_3 PF13014.1 gi|336254002|ref|YP_004597109.1| - 0.019 14.6 0.1 0.073 12.7 0.0 1.9 2 0 0 2 2 2 0 KH domain tRNA-synt_1 PF00133.17 gi|336254003|ref|YP_004597110.1| - 1.8e-63 214.4 0.0 3.9e-41 140.7 0.6 4.9 1 1 1 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1_2 PF13603.1 gi|336254003|ref|YP_004597110.1| - 4.9e-58 195.4 0.0 8.1e-58 194.7 0.0 1.3 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1g PF09334.6 gi|336254003|ref|YP_004597110.1| - 1.1e-31 109.8 0.1 3.6e-23 81.8 0.0 4.7 5 1 0 5 5 5 2 tRNA synthetases class I (M) Anticodon_1 PF08264.8 gi|336254003|ref|YP_004597110.1| - 1.3e-17 63.9 0.1 2.3e-17 63.1 0.0 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1f PF01921.13 gi|336254003|ref|YP_004597110.1| - 0.001 17.8 0.0 0.56 8.8 0.0 3.1 2 1 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1e PF01406.14 gi|336254003|ref|YP_004597110.1| - 0.0063 15.6 0.0 1.8 7.6 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain DZR PF12773.2 gi|336254003|ref|YP_004597110.1| - 0.012 15.3 2.7 1.2 8.9 0.2 2.5 2 0 0 2 2 2 0 Double zinc ribbon IBR PF01485.16 gi|336254003|ref|YP_004597110.1| - 0.016 15.0 0.7 0.21 11.4 0.2 2.5 3 0 0 3 3 3 0 IBR domain Ric8 PF10165.4 gi|336254003|ref|YP_004597110.1| - 0.055 12.2 0.0 0.081 11.7 0.0 1.1 1 0 0 1 1 1 0 Guanine nucleotide exchange factor synembryn DNA_ligase_ZBD PF03119.11 gi|336254003|ref|YP_004597110.1| - 0.2 11.3 3.0 0.45 10.2 0.0 3.0 2 1 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain TF_Zn_Ribbon PF08271.7 gi|336254003|ref|YP_004597110.1| - 0.21 10.9 11.7 3.5 7.0 0.3 4.4 4 1 1 5 5 5 0 TFIIB zinc-binding tRNA-synt_1d PF00750.14 gi|336254003|ref|YP_004597110.1| - 0.29 9.8 0.0 0.88 8.3 0.0 1.7 2 0 0 2 2 2 0 tRNA synthetases class I (R) Zn-ribbon_8 PF09723.5 gi|336254003|ref|YP_004597110.1| - 0.89 9.5 6.6 0.45 10.4 0.1 3.1 3 0 0 3 3 3 0 Zinc ribbon domain Mago-bind PF09282.5 gi|336254004|ref|YP_004597111.1| - 7.4 6.2 6.3 15 5.2 0.1 2.9 3 0 0 3 3 3 0 Mago binding DUF420 PF04238.7 gi|336254005|ref|YP_004597112.1| - 1e-39 135.5 11.5 1e-39 135.5 8.0 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF420) DUF2306 PF10067.4 gi|336254005|ref|YP_004597112.1| - 0.0021 18.1 4.1 0.0021 18.1 2.9 2.7 1 1 0 2 2 2 1 Predicted membrane protein (DUF2306) DUF1240 PF06836.7 gi|336254005|ref|YP_004597112.1| - 0.06 13.5 0.8 0.06 13.5 0.5 2.0 2 1 1 3 3 3 0 Protein of unknown function (DUF1240) DUF3413 PF11893.3 gi|336254005|ref|YP_004597112.1| - 0.65 8.8 6.8 1.2 7.9 0.4 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF3413) Cytochrom_B561 PF03188.11 gi|336254005|ref|YP_004597112.1| - 0.88 9.4 9.6 0.05 13.4 1.8 2.2 2 1 0 2 2 2 0 Eukaryotic cytochrome b561 OppC_N PF12911.2 gi|336254005|ref|YP_004597112.1| - 5.3 6.5 11.3 0.74 9.2 0.7 3.2 3 0 0 3 3 3 0 N-terminal TM domain of oligopeptide transport permease C TM140 PF14985.1 gi|336254005|ref|YP_004597112.1| - 8.3 6.0 10.8 0.17 11.5 1.4 2.3 2 1 0 2 2 2 0 TM140 protein family DUF3481 PF11980.3 gi|336254005|ref|YP_004597112.1| - 9.7 6.1 8.7 0.27 11.1 0.3 2.5 3 0 0 3 3 3 0 Domain of unknown function (DUF3481) Pyridox_oxidase PF01243.15 gi|336254006|ref|YP_004597113.1| - 0.00022 21.1 0.0 0.00033 20.6 0.0 1.3 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_ox_2 PF12900.2 gi|336254006|ref|YP_004597113.1| - 0.0013 18.5 0.1 0.0018 18.1 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase ABC2_membrane PF01061.19 gi|336254007|ref|YP_004597114.1| - 5.4e-28 97.5 7.0 5.4e-28 97.5 4.8 1.3 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|336254007|ref|YP_004597114.1| - 1.2e-14 54.1 2.8 1.2e-14 54.1 2.0 2.0 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|336254007|ref|YP_004597114.1| - 7.2e-07 28.6 6.7 1.2e-06 27.8 4.6 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|336254007|ref|YP_004597114.1| - 7.7e-05 21.6 16.4 0.00078 18.3 11.3 2.0 1 1 0 1 1 1 1 ABC-2 family transporter protein DUF2074 PF09847.4 gi|336254007|ref|YP_004597114.1| - 0.0006 18.6 1.0 0.00086 18.1 0.7 1.3 1 0 0 1 1 1 1 Predicted permease (DUF2074) CcmB PF03379.8 gi|336254007|ref|YP_004597114.1| - 0.0093 15.1 1.1 0.0093 15.1 0.7 1.8 2 0 0 2 2 2 1 CcmB protein ABC_tran PF00005.22 gi|336254008|ref|YP_004597115.1| - 7.4e-29 100.7 0.0 1.2e-28 100.0 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|336254008|ref|YP_004597115.1| - 4.1e-16 59.7 0.0 3.1e-09 37.2 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|336254008|ref|YP_004597115.1| - 2.5e-05 24.3 0.1 5.2e-05 23.3 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_28 PF13521.1 gi|336254008|ref|YP_004597115.1| - 7e-05 22.8 0.0 0.00015 21.7 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|336254008|ref|YP_004597115.1| - 8.7e-05 21.9 0.1 0.00016 21.1 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|336254008|ref|YP_004597115.1| - 0.00027 21.3 0.2 0.00041 20.7 0.2 1.2 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|336254008|ref|YP_004597115.1| - 0.00028 20.5 0.2 0.01 15.3 0.0 2.3 2 0 0 2 2 2 1 AAA domain UPF0079 PF02367.12 gi|336254008|ref|YP_004597115.1| - 0.0013 18.3 0.2 0.0026 17.3 0.1 1.4 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 IstB_IS21 PF01695.12 gi|336254008|ref|YP_004597115.1| - 0.0025 17.2 0.0 0.18 11.2 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_15 PF13175.1 gi|336254008|ref|YP_004597115.1| - 0.0046 16.0 0.0 1.7 7.5 0.0 2.0 2 0 0 2 2 2 2 AAA ATPase domain AAA_17 PF13207.1 gi|336254008|ref|YP_004597115.1| - 0.0075 17.0 1.4 0.015 16.1 0.1 2.1 2 2 0 2 2 2 1 AAA domain cobW PF02492.14 gi|336254008|ref|YP_004597115.1| - 0.0099 15.3 0.0 0.023 14.1 0.0 1.6 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_33 PF13671.1 gi|336254008|ref|YP_004597115.1| - 0.01 15.7 0.0 0.083 12.7 0.0 2.3 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|336254008|ref|YP_004597115.1| - 0.011 14.9 0.0 0.018 14.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|336254008|ref|YP_004597115.1| - 0.014 15.5 0.0 0.024 14.7 0.0 1.5 1 1 0 1 1 1 0 AAA domain SMC_N PF02463.14 gi|336254008|ref|YP_004597115.1| - 0.022 14.0 0.0 0.18 10.9 0.0 2.0 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain ABC_ATPase PF09818.4 gi|336254008|ref|YP_004597115.1| - 0.022 13.3 0.1 0.036 12.6 0.1 1.2 1 0 0 1 1 1 0 Predicted ATPase of the ABC class AAA PF00004.24 gi|336254008|ref|YP_004597115.1| - 0.029 14.5 0.0 0.074 13.2 0.0 1.6 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|336254008|ref|YP_004597115.1| - 0.031 14.0 0.1 0.91 9.2 0.0 2.5 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_25 PF13481.1 gi|336254008|ref|YP_004597115.1| - 0.034 13.5 0.0 0.13 11.6 0.0 1.9 2 0 0 2 2 2 0 AAA domain Miro PF08477.8 gi|336254008|ref|YP_004597115.1| - 0.045 14.2 0.0 0.11 13.0 0.0 1.6 1 0 0 1 1 1 0 Miro-like protein SbcCD_C PF13558.1 gi|336254008|ref|YP_004597115.1| - 0.049 13.5 0.0 0.16 11.8 0.0 1.9 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit MMR_HSR1 PF01926.18 gi|336254008|ref|YP_004597115.1| - 0.063 13.2 0.0 0.14 12.1 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_19 PF13245.1 gi|336254008|ref|YP_004597115.1| - 0.11 12.3 4.0 0.28 10.9 0.3 2.4 2 0 0 2 2 2 0 Part of AAA domain PduV-EutP PF10662.4 gi|336254008|ref|YP_004597115.1| - 0.13 11.7 0.0 0.28 10.6 0.0 1.5 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation NACHT PF05729.7 gi|336254008|ref|YP_004597115.1| - 0.17 11.5 0.1 0.33 10.6 0.0 1.4 1 0 0 1 1 1 0 NACHT domain Acetyltransf_9 PF13527.1 gi|336254009|ref|YP_004597116.1| - 4.3e-18 65.3 0.0 6.2e-17 61.6 0.0 2.2 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|336254009|ref|YP_004597116.1| - 2.2e-05 24.3 0.2 6.1e-05 22.9 0.1 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|336254009|ref|YP_004597116.1| - 0.00012 22.1 0.1 0.19 11.8 0.0 2.5 2 1 0 2 2 2 2 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|336254009|ref|YP_004597116.1| - 0.0014 18.7 0.0 0.064 13.4 0.0 2.5 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|336254009|ref|YP_004597116.1| - 0.0016 18.3 1.1 0.052 13.4 0.1 2.7 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|336254009|ref|YP_004597116.1| - 0.086 12.6 0.1 0.64 9.8 0.0 2.4 3 0 0 3 3 3 0 FR47-like protein Bac_luciferase PF00296.15 gi|336254010|ref|YP_004597117.1| - 4.9e-59 199.9 2.8 6.4e-59 199.5 1.9 1.2 1 0 0 1 1 1 1 Luciferase-like monooxygenase DUF4142 PF13628.1 gi|336254010|ref|YP_004597117.1| - 0.00091 19.2 0.2 0.0015 18.5 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4142) OPA3 PF07047.7 gi|336254010|ref|YP_004597117.1| - 0.089 12.5 0.0 0.13 12.0 0.0 1.3 1 0 0 1 1 1 0 Optic atrophy 3 protein (OPA3) Complex1_51K PF01512.12 gi|336254011|ref|YP_004597118.1| - 2.6e-18 66.2 0.0 4.3e-18 65.4 0.0 1.4 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase 51 Kd subunit RnfC_N PF13375.1 gi|336254011|ref|YP_004597118.1| - 1.2e-07 31.4 0.1 2e-07 30.6 0.0 1.4 1 0 0 1 1 1 1 RnfC Barrel sandwich hybrid domain SLBB PF10531.4 gi|336254011|ref|YP_004597118.1| - 0.00021 21.1 0.0 0.00048 19.9 0.0 1.7 1 0 0 1 1 1 1 SLBB domain HTH_10 PF04967.7 gi|336254012|ref|YP_004597119.1| - 2.6e-11 42.9 0.0 4e-11 42.3 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain HTH_Tnp_ISL3 PF13542.1 gi|336254012|ref|YP_004597119.1| - 0.018 14.1 0.1 0.12 11.5 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 HTH_31 PF13560.1 gi|336254012|ref|YP_004597119.1| - 0.1 12.8 4.5 1.8 8.7 0.2 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain Aldo_ket_red PF00248.16 gi|336254013|ref|YP_004597120.1| - 6.9e-57 192.4 0.0 8.4e-57 192.1 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family HBS1_N PF08938.5 gi|336254013|ref|YP_004597120.1| - 0.023 14.8 0.3 1.8 8.7 0.0 2.6 2 1 0 2 2 2 0 HBS1 N-terminus DUF418 PF04235.7 gi|336254014|ref|YP_004597121.1| - 8.4e-49 165.3 11.7 8.4e-49 165.3 8.1 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF418) Pterin_bind PF00809.17 gi|336254015|ref|YP_004597122.1| - 1.5e-70 236.8 0.3 2.3e-70 236.2 0.2 1.3 1 0 0 1 1 1 1 Pterin binding enzyme Mur_ligase_M PF08245.7 gi|336254015|ref|YP_004597122.1| - 1.6e-13 51.1 0.0 2.8e-13 50.3 0.0 1.4 1 0 0 1 1 1 1 Mur ligase middle domain Mur_ligase_C PF02875.16 gi|336254015|ref|YP_004597122.1| - 2e-09 37.3 0.0 8.1e-09 35.4 0.0 2.0 2 0 0 2 2 2 1 Mur ligase family, glutamate ligase domain PEP_mutase PF13714.1 gi|336254015|ref|YP_004597122.1| - 0.00032 19.9 2.0 0.034 13.3 0.0 3.7 4 1 0 4 4 4 1 Phosphoenolpyruvate phosphomutase DFP PF04127.10 gi|336254015|ref|YP_004597122.1| - 0.23 11.0 2.3 6 6.4 0.0 2.9 3 0 0 3 3 3 0 DNA / pantothenate metabolism flavoprotein Cupin_2 PF07883.6 gi|336254016|ref|YP_004597123.1| - 7.6e-10 38.1 0.7 1.1e-09 37.5 0.5 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|336254016|ref|YP_004597123.1| - 0.00093 18.8 0.0 0.0012 18.5 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_1 PF00190.17 gi|336254016|ref|YP_004597123.1| - 0.0063 15.9 0.0 0.0076 15.6 0.0 1.2 1 0 0 1 1 1 1 Cupin Cupin_6 PF12852.2 gi|336254016|ref|YP_004597123.1| - 0.014 15.0 0.9 0.017 14.7 0.6 1.2 1 1 0 1 1 1 0 Cupin Cupin_3 PF05899.7 gi|336254016|ref|YP_004597123.1| - 0.029 13.7 0.2 0.041 13.2 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF861) AraC_binding_2 PF14525.1 gi|336254016|ref|YP_004597123.1| - 0.049 13.1 0.1 0.055 13.0 0.1 1.1 1 0 0 1 1 1 0 AraC-binding-like domain ABC_tran PF00005.22 gi|336254018|ref|YP_004597125.1| - 2.8e-28 98.9 0.0 3.7e-28 98.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|336254018|ref|YP_004597125.1| - 1.1e-11 45.3 0.0 2.8e-07 30.8 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|336254018|ref|YP_004597125.1| - 0.012 15.0 0.6 0.022 14.3 0.4 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|336254018|ref|YP_004597125.1| - 0.034 14.4 1.2 0.052 13.8 0.1 1.7 1 1 1 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|336254018|ref|YP_004597125.1| - 0.035 13.6 0.8 0.071 12.6 0.6 1.5 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|336254018|ref|YP_004597125.1| - 0.037 13.9 0.0 0.07 13.1 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_15 PF13175.1 gi|336254018|ref|YP_004597125.1| - 0.052 12.5 0.0 0.19 10.7 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain AAA_22 PF13401.1 gi|336254018|ref|YP_004597125.1| - 0.056 13.5 0.8 0.4 10.8 0.6 2.3 1 1 0 1 1 1 0 AAA domain AAA_13 PF13166.1 gi|336254018|ref|YP_004597125.1| - 0.07 11.5 0.0 0.23 9.8 0.0 1.8 1 1 0 2 2 2 0 AAA domain SbcCD_C PF13558.1 gi|336254018|ref|YP_004597125.1| - 0.09 12.7 0.0 0.17 11.8 0.0 1.5 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA PF00004.24 gi|336254018|ref|YP_004597125.1| - 0.11 12.6 0.0 0.29 11.3 0.0 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SRP54 PF00448.17 gi|336254018|ref|YP_004597125.1| - 0.23 10.8 1.2 0.36 10.2 0.8 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Aldo_ket_red PF00248.16 gi|336254020|ref|YP_004597127.1| - 1.6e-76 256.8 0.0 1.9e-76 256.5 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family HA PF03457.9 gi|336254022|ref|YP_004597129.1| - 0.077 13.1 0.2 0.24 11.5 0.0 1.8 2 0 0 2 2 2 0 Helicase associated domain UbiA PF01040.13 gi|336254023|ref|YP_004597130.1| - 1.5e-28 99.6 28.9 1.5e-28 99.6 20.1 3.0 2 1 0 2 2 2 1 UbiA prenyltransferase family COX15-CtaA PF02628.10 gi|336254023|ref|YP_004597130.1| - 1.1e-17 63.9 11.4 1.1e-17 63.9 7.9 2.7 3 0 0 3 3 3 1 Cytochrome oxidase assembly protein Hexapep_2 PF14602.1 gi|336254023|ref|YP_004597130.1| - 0.23 11.0 2.3 0.36 10.4 0.2 2.3 2 0 0 2 2 2 0 Hexapeptide repeat of succinyl-transferase DUF4491 PF14898.1 gi|336254023|ref|YP_004597130.1| - 2.4 8.3 7.9 0.22 11.7 0.2 3.1 2 1 1 3 3 3 0 Domain of unknown function (DUF4491) DUF3267 PF11667.3 gi|336254025|ref|YP_004597132.1| - 2.9e-20 72.5 0.4 2.9e-20 72.5 0.2 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF3267) FA_desaturase PF00487.19 gi|336254025|ref|YP_004597132.1| - 0.023 14.1 1.1 0.023 14.1 0.7 3.6 2 1 1 3 3 3 0 Fatty acid desaturase Peptidase_M50 PF02163.17 gi|336254025|ref|YP_004597132.1| - 0.093 11.6 1.5 0.58 9.0 1.0 2.3 1 1 0 1 1 1 0 Peptidase family M50 DUF2627 PF11118.3 gi|336254025|ref|YP_004597132.1| - 2.1 8.5 6.6 4.3 7.5 0.2 3.3 3 0 0 3 3 3 0 Protein of unknown function (DUF2627) DUF3481 PF11980.3 gi|336254025|ref|YP_004597132.1| - 3.4 7.5 4.5 9.4 6.1 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF3481) PadR PF03551.9 gi|336254026|ref|YP_004597133.1| - 2.4e-07 30.4 0.0 3.5e-07 29.8 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_20 PF12840.2 gi|336254026|ref|YP_004597133.1| - 0.0032 17.2 0.0 0.0046 16.7 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain DUF1495 PF07381.6 gi|336254026|ref|YP_004597133.1| - 0.0045 16.6 0.0 0.014 15.0 0.0 1.8 1 1 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) OST-HTH PF12872.2 gi|336254026|ref|YP_004597133.1| - 0.0076 16.0 0.0 0.012 15.4 0.0 1.4 1 0 0 1 1 1 1 OST-HTH/LOTUS domain HTH_27 PF13463.1 gi|336254026|ref|YP_004597133.1| - 0.0089 16.3 0.0 0.024 14.9 0.0 1.7 1 1 0 1 1 1 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|336254026|ref|YP_004597133.1| - 0.014 15.1 0.0 0.019 14.8 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_34 PF13601.1 gi|336254026|ref|YP_004597133.1| - 0.033 14.2 0.0 0.052 13.5 0.0 1.6 1 1 0 1 1 1 0 Winged helix DNA-binding domain TrmB PF01978.14 gi|336254026|ref|YP_004597133.1| - 0.077 12.7 0.0 0.1 12.2 0.0 1.4 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Mrr_N PF14338.1 gi|336254026|ref|YP_004597133.1| - 0.084 12.9 0.0 0.98 9.5 0.0 2.1 2 1 0 2 2 2 0 Mrr N-terminal domain Acyl-CoA_dh_1 PF00441.19 gi|336254027|ref|YP_004597134.1| - 2.8e-49 167.0 0.8 4.5e-49 166.3 0.5 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|336254027|ref|YP_004597134.1| - 3.8e-37 127.3 0.0 8.9e-37 126.1 0.0 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.6 gi|336254027|ref|YP_004597134.1| - 1.4e-23 83.6 0.4 2.1e-23 83.0 0.2 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|336254027|ref|YP_004597134.1| - 2.3e-20 71.8 0.5 1.4e-19 69.3 0.2 2.3 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, middle domain AMP-binding PF00501.23 gi|336254028|ref|YP_004597135.1| - 3.1e-84 282.8 0.0 3.6e-84 282.5 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|336254028|ref|YP_004597135.1| - 4.6e-22 78.7 0.2 9.1e-22 77.8 0.1 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain NAD_binding_10 PF13460.1 gi|336254029|ref|YP_004597136.1| - 1.1e-36 126.5 0.5 1.4e-36 126.1 0.4 1.1 1 0 0 1 1 1 1 NADH(P)-binding NmrA PF05368.8 gi|336254029|ref|YP_004597136.1| - 5.5e-15 55.2 0.0 7.7e-15 54.7 0.0 1.2 1 0 0 1 1 1 1 NmrA-like family Epimerase PF01370.16 gi|336254029|ref|YP_004597136.1| - 1.5e-11 44.2 0.0 2.5e-11 43.4 0.0 1.4 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|336254029|ref|YP_004597136.1| - 1.7e-07 30.2 0.0 2.4e-07 29.7 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family TrkA_N PF02254.13 gi|336254029|ref|YP_004597136.1| - 4.8e-06 26.5 0.1 0.00017 21.5 0.0 2.5 2 1 0 2 2 2 1 TrkA-N domain adh_short PF00106.20 gi|336254029|ref|YP_004597136.1| - 6.9e-05 22.8 0.0 0.0048 16.8 0.0 2.4 1 1 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|336254029|ref|YP_004597136.1| - 0.00011 21.9 0.1 0.56 9.8 0.0 2.6 1 1 1 2 2 2 2 KR domain PAC2 PF09754.4 gi|336254029|ref|YP_004597136.1| - 0.0062 16.4 0.0 0.0094 15.8 0.0 1.3 1 0 0 1 1 1 1 PAC2 family Polysacc_synt_2 PF02719.10 gi|336254029|ref|YP_004597136.1| - 0.032 13.1 0.0 0.18 10.6 0.0 2.1 1 1 0 1 1 1 0 Polysaccharide biosynthesis protein Semialdhyde_dh PF01118.19 gi|336254029|ref|YP_004597136.1| - 0.038 14.2 0.1 0.059 13.6 0.0 1.3 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain NAD_binding_4 PF07993.7 gi|336254029|ref|YP_004597136.1| - 0.086 11.7 0.0 0.16 10.8 0.0 1.4 1 1 0 1 1 1 0 Male sterility protein Oxidored_nitro PF00148.14 gi|336254029|ref|YP_004597136.1| - 0.092 11.3 0.0 0.12 11.0 0.0 1.1 1 0 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase SQS_PSY PF00494.14 gi|336254030|ref|YP_004597137.1| - 1.4e-50 172.0 2.4 1.7e-50 171.7 1.7 1.1 1 0 0 1 1 1 1 Squalene/phytoene synthase Aminotran_1_2 PF00155.16 gi|336254032|ref|YP_004597139.1| - 4.9e-68 229.7 0.0 5.6e-68 229.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|336254032|ref|YP_004597139.1| - 1.4e-13 50.3 0.0 4e-12 45.5 0.0 2.1 2 0 0 2 2 2 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|336254032|ref|YP_004597139.1| - 1.6e-09 37.2 0.9 3.2e-09 36.2 0.6 1.4 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|336254032|ref|YP_004597139.1| - 1.8e-06 27.3 0.0 2.7e-06 26.7 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|336254032|ref|YP_004597139.1| - 1.3e-05 23.7 0.0 2.8e-05 22.5 0.0 1.5 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme CPT PF07931.7 gi|336254032|ref|YP_004597139.1| - 0.0021 17.7 0.2 0.24 10.9 0.0 2.5 1 1 1 2 2 2 1 Chloramphenicol phosphotransferase-like protein 3HCDH_N PF02737.13 gi|336254033|ref|YP_004597140.1| - 3.1e-60 202.9 0.1 3.7e-60 202.6 0.0 1.1 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.17 gi|336254033|ref|YP_004597140.1| - 1.8e-32 111.6 0.0 5.6e-32 110.0 0.0 1.8 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_Gly3P_dh_N PF01210.18 gi|336254033|ref|YP_004597140.1| - 6.4e-06 25.9 0.0 8.7e-06 25.5 0.0 1.2 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_2 PF03446.10 gi|336254033|ref|YP_004597140.1| - 0.00021 21.1 0.2 0.00047 20.0 0.1 1.6 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|336254033|ref|YP_004597140.1| - 0.0018 18.6 1.4 0.0068 16.8 0.4 2.3 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|336254033|ref|YP_004597140.1| - 0.094 11.8 0.1 0.17 11.0 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Lipase_GDSL_3 PF14606.1 gi|336254034|ref|YP_004597141.1| - 9.6e-25 87.3 0.0 1.2e-24 87.0 0.0 1.1 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family GxDLY PF14607.1 gi|336254034|ref|YP_004597141.1| - 0.15 11.5 0.0 0.23 10.9 0.0 1.2 1 0 0 1 1 1 0 N-terminus of Esterase_SGNH_hydro-type HHH_5 PF14520.1 gi|336254035|ref|YP_004597142.1| - 8.3e-05 22.6 0.8 0.0028 17.8 0.1 2.6 2 1 0 2 2 2 1 Helix-hairpin-helix domain DUF4332 PF14229.1 gi|336254035|ref|YP_004597142.1| - 0.0076 16.2 0.0 0.015 15.3 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4332) DUF2407_C PF13373.1 gi|336254035|ref|YP_004597142.1| - 0.038 13.8 0.1 0.065 13.1 0.1 1.3 1 0 0 1 1 1 0 DUF2407 C-terminal domain DeoC PF01791.4 gi|336254036|ref|YP_004597143.1| - 3e-38 131.4 0.0 3.5e-38 131.2 0.0 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase FBPase PF00316.15 gi|336254037|ref|YP_004597144.1| - 4.3e-65 219.6 0.0 5.2e-65 219.4 0.0 1.0 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase Inositol_P PF00459.20 gi|336254037|ref|YP_004597144.1| - 0.00052 19.4 0.0 0.00075 18.8 0.0 1.2 1 0 0 1 1 1 1 Inositol monophosphatase family DUF2809 PF10990.3 gi|336254038|ref|YP_004597145.1| - 0.054 13.9 0.8 0.059 13.7 0.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2809) DUF2244 PF10003.4 gi|336254038|ref|YP_004597145.1| - 0.42 9.9 3.0 0.41 9.9 2.1 1.2 1 0 0 1 1 1 0 Integral membrane protein (DUF2244) DUF4131 PF13567.1 gi|336254038|ref|YP_004597145.1| - 4.9 6.5 6.7 5.8 6.2 4.6 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) Carboxyl_trans PF01039.17 gi|336254040|ref|YP_004597147.1| - 4.2e-133 444.2 0.1 5.3e-133 443.9 0.1 1.0 1 0 0 1 1 1 1 Carboxyl transferase domain Acetyltransf_3 PF13302.1 gi|336254042|ref|YP_004597149.1| - 5.3e-22 78.5 0.1 7.1e-22 78.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|336254042|ref|YP_004597149.1| - 0.00081 19.3 0.0 0.0011 18.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|336254042|ref|YP_004597149.1| - 0.01 15.8 0.1 0.021 14.8 0.1 1.5 1 0 0 1 1 1 0 Acetyltransferase (GNAT) family Acetyltransf_8 PF13523.1 gi|336254042|ref|YP_004597149.1| - 0.024 14.5 0.0 0.04 13.8 0.0 1.5 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain bPH_2 PF03703.9 gi|336254043|ref|YP_004597150.1| - 1.4e-13 50.6 0.1 2.1e-13 50.0 0.0 1.2 1 0 0 1 1 1 1 Bacterial PH domain Defensin_big PF14862.1 gi|336254043|ref|YP_004597150.1| - 4.6 7.3 6.2 2.1 8.4 1.0 2.3 2 0 0 2 2 2 0 Big defensin bPH_2 PF03703.9 gi|336254044|ref|YP_004597151.1| - 1e-16 60.7 0.0 1.8e-16 59.8 0.0 1.4 1 0 0 1 1 1 1 Bacterial PH domain DUF3188 PF11384.3 gi|336254044|ref|YP_004597151.1| - 0.29 10.7 2.2 0.73 9.4 1.5 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3188) MaoC_dehydratas PF01575.14 gi|336254045|ref|YP_004597152.1| - 2.2e-23 81.9 0.1 2.9e-23 81.5 0.1 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.1 gi|336254045|ref|YP_004597152.1| - 9.6e-07 28.6 0.2 5.4e-06 26.2 0.1 1.9 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase Sm_multidrug_ex PF06695.6 gi|336254046|ref|YP_004597153.1| - 0.0048 17.0 0.8 0.0048 17.0 0.6 2.1 2 1 1 3 3 3 1 Putative small multi-drug export protein SNARE_assoc PF09335.6 gi|336254046|ref|YP_004597153.1| - 0.32 11.2 8.8 0.22 11.7 4.4 1.9 1 1 1 2 2 2 0 SNARE associated Golgi protein DUF4231 PF14015.1 gi|336254046|ref|YP_004597153.1| - 3.4 7.6 11.9 0.53 10.2 1.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4231) Chloroplast_duf PF14476.1 gi|336254046|ref|YP_004597153.1| - 4.8 5.8 5.6 0.58 8.9 0.7 1.7 2 0 0 2 2 2 0 Petal formation-expressed Aldedh PF00171.17 gi|336254047|ref|YP_004597154.1| - 1.6e-140 468.5 0.0 1.8e-140 468.3 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family FEZ PF07763.8 gi|336254047|ref|YP_004597154.1| - 4.4 6.9 7.3 1.5 8.4 0.6 2.1 2 0 0 2 2 2 0 FEZ-like protein ELFV_dehydrog PF00208.16 gi|336254048|ref|YP_004597155.1| - 1.3e-69 234.4 0.0 1.8e-69 234.0 0.0 1.2 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.13 gi|336254048|ref|YP_004597155.1| - 7e-51 171.2 0.0 1.2e-50 170.4 0.0 1.4 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain Bac_GDH PF05088.7 gi|336254048|ref|YP_004597155.1| - 0.0037 14.7 0.0 0.0059 14.0 0.0 1.2 1 0 0 1 1 1 1 Bacterial NAD-glutamate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|336254048|ref|YP_004597155.1| - 0.0064 15.6 0.0 0.011 14.9 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Cdc6_C PF09079.6 gi|336254049|ref|YP_004597156.1| - 5.3e-14 51.7 0.5 1.8e-13 49.9 0.1 2.0 2 0 0 2 2 2 1 CDC6, C terminal AAA_22 PF13401.1 gi|336254049|ref|YP_004597156.1| - 2.4e-13 50.3 0.3 8e-13 48.6 0.0 1.9 2 1 1 3 3 3 1 AAA domain AAA_16 PF13191.1 gi|336254049|ref|YP_004597156.1| - 3.3e-11 43.5 1.7 1.3e-10 41.6 0.2 2.5 2 1 0 2 2 2 1 AAA ATPase domain NACHT PF05729.7 gi|336254049|ref|YP_004597156.1| - 2.7e-07 30.3 0.0 4.4e-07 29.7 0.0 1.3 1 0 0 1 1 1 1 NACHT domain AAA PF00004.24 gi|336254049|ref|YP_004597156.1| - 5.1e-07 29.9 0.0 1.4e-06 28.5 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|336254049|ref|YP_004597156.1| - 2.8e-06 27.1 0.0 7.7e-06 25.6 0.0 1.8 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) DUF815 PF05673.8 gi|336254049|ref|YP_004597156.1| - 3.3e-05 22.9 0.0 8.2e-05 21.6 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF815) Sigma54_activat PF00158.21 gi|336254049|ref|YP_004597156.1| - 0.00015 21.2 0.0 0.00034 20.1 0.0 1.6 1 0 0 1 1 1 1 Sigma-54 interaction domain Arch_ATPase PF01637.13 gi|336254049|ref|YP_004597156.1| - 0.00034 20.4 0.0 0.00086 19.0 0.0 1.6 1 1 0 1 1 1 1 Archaeal ATPase NB-ARC PF00931.17 gi|336254049|ref|YP_004597156.1| - 0.00059 18.7 0.0 0.00086 18.2 0.0 1.2 1 0 0 1 1 1 1 NB-ARC domain PhoH PF02562.11 gi|336254049|ref|YP_004597156.1| - 0.0014 17.8 0.1 0.45 9.7 0.0 2.3 2 0 0 2 2 2 1 PhoH-like protein AAA_2 PF07724.9 gi|336254049|ref|YP_004597156.1| - 0.0023 17.8 0.0 0.0046 16.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_32 PF13654.1 gi|336254049|ref|YP_004597156.1| - 0.0024 16.5 0.5 0.27 9.8 0.2 2.1 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|336254049|ref|YP_004597156.1| - 0.0031 18.3 0.4 0.028 15.2 0.1 2.4 2 1 0 2 2 2 1 AAA domain DUF2791 PF10923.3 gi|336254049|ref|YP_004597156.1| - 0.0038 15.8 0.0 0.0076 14.8 0.0 1.5 1 0 0 1 1 1 1 P-loop Domain of unknown function (DUF2791) AAA_25 PF13481.1 gi|336254049|ref|YP_004597156.1| - 0.0091 15.4 0.1 0.023 14.0 0.0 1.7 2 0 0 2 2 2 1 AAA domain DUF2075 PF09848.4 gi|336254049|ref|YP_004597156.1| - 0.027 13.4 0.0 0.038 12.9 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) RNA_helicase PF00910.17 gi|336254049|ref|YP_004597156.1| - 0.067 13.3 0.0 0.22 11.7 0.0 2.0 2 0 0 2 2 2 0 RNA helicase AAA_19 PF13245.1 gi|336254049|ref|YP_004597156.1| - 0.083 12.6 0.0 0.29 10.9 0.0 1.9 1 0 0 1 1 1 0 Part of AAA domain ABC_tran PF00005.22 gi|336254049|ref|YP_004597156.1| - 0.085 13.1 0.1 0.31 11.3 0.1 2.1 1 1 0 1 1 1 0 ABC transporter KAP_NTPase PF07693.9 gi|336254049|ref|YP_004597156.1| - 0.096 11.6 0.0 3.1 6.7 0.1 2.4 3 0 0 3 3 3 0 KAP family P-loop domain DEAD PF00270.24 gi|336254049|ref|YP_004597156.1| - 0.099 12.1 0.8 9.7 5.6 0.0 2.5 1 1 0 2 2 2 0 DEAD/DEAH box helicase AAA_18 PF13238.1 gi|336254049|ref|YP_004597156.1| - 0.13 12.6 1.1 0.26 11.6 0.1 2.1 2 1 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|336254049|ref|YP_004597156.1| - 0.77 9.6 3.8 4.8 7.0 0.2 3.0 2 1 1 3 3 3 0 AAA domain HpcH_HpaI PF03328.9 gi|336254050|ref|YP_004597157.1| - 1.9e-52 177.3 5.2 4.4e-52 176.1 3.6 1.6 1 1 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family C-C_Bond_Lyase PF15617.1 gi|336254050|ref|YP_004597157.1| - 8.9e-11 41.1 0.0 3.2e-05 22.9 0.0 2.3 1 1 0 2 2 2 2 C-C_Bond_Lyase of the TIM-Barrel fold ELFV_dehydrog PF00208.16 gi|336254051|ref|YP_004597158.1| - 3.1e-74 249.6 0.6 4.5e-74 249.1 0.4 1.2 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.13 gi|336254051|ref|YP_004597158.1| - 5.3e-50 168.3 0.0 8e-50 167.8 0.0 1.3 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain Oxidored_nitro PF00148.14 gi|336254051|ref|YP_004597158.1| - 0.0022 16.6 0.0 0.0034 16.0 0.0 1.2 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase 2-Hacid_dh_C PF02826.14 gi|336254051|ref|YP_004597158.1| - 0.0028 16.8 0.1 0.0073 15.4 0.1 1.7 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.16 gi|336254051|ref|YP_004597158.1| - 0.0079 15.7 0.1 0.025 14.1 0.0 1.8 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain ABC_membrane PF00664.18 gi|336254052|ref|YP_004597159.1| - 7.7e-36 123.9 0.8 1e-35 123.4 0.5 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.22 gi|336254052|ref|YP_004597159.1| - 1.1e-28 100.1 0.0 2e-28 99.3 0.0 1.4 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.14 gi|336254052|ref|YP_004597159.1| - 1.7e-05 24.1 0.0 9.6e-05 21.7 0.0 1.9 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_18 PF13238.1 gi|336254052|ref|YP_004597159.1| - 0.003 17.8 0.1 0.0074 16.5 0.0 1.7 2 0 0 2 2 1 1 AAA domain AAA_17 PF13207.1 gi|336254052|ref|YP_004597159.1| - 0.0045 17.7 0.7 0.014 16.2 0.5 2.0 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|336254052|ref|YP_004597159.1| - 0.0059 16.1 0.3 0.014 14.9 0.2 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF3584 PF12128.3 gi|336254052|ref|YP_004597159.1| - 0.014 12.7 0.0 0.023 12.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) DUF258 PF03193.11 gi|336254052|ref|YP_004597159.1| - 0.084 12.0 0.0 0.15 11.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 ABC_ATPase PF09818.4 gi|336254052|ref|YP_004597159.1| - 0.09 11.3 0.3 0.28 9.7 0.0 1.8 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_21 PF13304.1 gi|336254052|ref|YP_004597159.1| - 0.093 12.6 0.0 2.9 7.7 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|336254052|ref|YP_004597159.1| - 0.1 12.5 1.6 0.89 9.5 1.1 2.3 1 1 0 1 1 1 0 AAA ATPase domain AAA_25 PF13481.1 gi|336254052|ref|YP_004597159.1| - 0.43 9.9 2.4 3.2 7.1 0.1 2.7 3 0 0 3 3 3 0 AAA domain DUF2062 PF09835.4 gi|336254053|ref|YP_004597160.1| - 3.6e-21 75.3 2.1 4.4e-21 75.1 1.4 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2062) FtsX PF02687.16 gi|336254053|ref|YP_004597160.1| - 0.025 14.3 3.8 1 9.0 1.1 2.1 2 0 0 2 2 2 0 FtsX-like permease family DUF2157 PF09925.4 gi|336254053|ref|YP_004597160.1| - 0.025 14.1 1.2 0.039 13.5 0.8 1.4 1 1 0 1 1 1 0 Predicted membrane protein (DUF2157) RIC3 PF15361.1 gi|336254053|ref|YP_004597160.1| - 0.09 13.0 0.0 0.13 12.5 0.0 1.2 1 0 0 1 1 1 0 Resistance to inhibitors of cholinesterase homologue 3 HupF_HypC PF01455.13 gi|336254054|ref|YP_004597161.1| - 0.066 13.2 0.2 0.13 12.2 0.1 1.6 1 0 0 1 1 1 0 HupF/HypC family Acyl-CoA_dh_1 PF00441.19 gi|336254055|ref|YP_004597162.1| - 6.3e-48 162.6 0.4 8.8e-48 162.2 0.3 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|336254055|ref|YP_004597162.1| - 6.8e-37 126.5 0.1 1.5e-36 125.3 0.0 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.14 gi|336254055|ref|YP_004597162.1| - 9.3e-19 66.6 0.5 4.1e-18 64.6 0.2 2.1 1 1 1 2 2 2 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|336254055|ref|YP_004597162.1| - 4.9e-15 55.9 1.1 8.3e-15 55.2 0.8 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain RIO1 PF01163.17 gi|336254057|ref|YP_004597164.1| - 3e-10 39.7 0.0 4.6e-10 39.1 0.0 1.2 1 0 0 1 1 1 1 RIO1 family APH PF01636.18 gi|336254057|ref|YP_004597164.1| - 1.3e-09 38.1 0.5 8.3e-05 22.4 0.1 2.3 1 1 1 2 2 2 2 Phosphotransferase enzyme family Kdo PF06293.9 gi|336254057|ref|YP_004597164.1| - 1.6e-06 27.3 0.0 2.6e-06 26.6 0.0 1.3 1 0 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase PF00069.20 gi|336254057|ref|YP_004597164.1| - 2.3e-05 23.6 0.0 3.2e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain APH_6_hur PF04655.9 gi|336254057|ref|YP_004597164.1| - 0.037 13.1 0.0 0.057 12.5 0.0 1.3 1 0 0 1 1 1 0 Aminoglycoside/hydroxyurea antibiotic resistance kinase Kinase-like PF14531.1 gi|336254057|ref|YP_004597164.1| - 0.049 12.5 0.0 1.2 7.9 0.0 2.4 2 1 0 2 2 2 0 Kinase-like Fructosamin_kin PF03881.9 gi|336254057|ref|YP_004597164.1| - 0.11 11.4 0.1 4.3 6.2 0.0 2.3 1 1 1 2 2 2 0 Fructosamine kinase WaaY PF06176.6 gi|336254057|ref|YP_004597164.1| - 0.12 11.5 0.0 0.18 10.9 0.0 1.3 1 0 0 1 1 1 0 Lipopolysaccharide core biosynthesis protein (WaaY) Aldedh PF00171.17 gi|336254058|ref|YP_004597165.1| - 1.4e-143 478.5 0.0 1.6e-143 478.3 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.9 gi|336254058|ref|YP_004597165.1| - 0.03 13.0 0.0 0.068 11.8 0.0 1.6 1 1 0 1 1 1 0 Acyl-CoA reductase (LuxC) SPOUT_MTase_2 PF14419.1 gi|336254058|ref|YP_004597165.1| - 0.038 13.1 0.0 0.16 11.1 0.0 1.9 2 0 0 2 2 2 0 AF2226-like SPOUT RNA Methylase fused to THUMP OmdA PF13376.1 gi|336254058|ref|YP_004597165.1| - 0.11 12.1 0.1 0.23 11.1 0.1 1.4 1 0 0 1 1 1 0 Bacteriocin-protection, YdeI or OmpD-Associated CN_hydrolase PF00795.17 gi|336254059|ref|YP_004597166.1| - 2.4e-28 98.7 0.0 3.2e-28 98.3 0.0 1.1 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase DUF3875 PF12991.2 gi|336254059|ref|YP_004597166.1| - 0.013 15.1 0.1 3 7.6 0.0 3.0 3 0 0 3 3 3 0 Domain of unknown function, B. Theta Gene description (DUF3875) Polyketide_cyc2 PF10604.4 gi|336254060|ref|YP_004597167.1| - 1.7e-16 60.6 1.3 2e-16 60.4 0.9 1.0 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport COXG PF06240.8 gi|336254060|ref|YP_004597167.1| - 3.8e-06 26.6 0.0 6.5e-06 25.8 0.0 1.4 1 1 0 1 1 1 1 Carbon monoxide dehydrogenase subunit G (CoxG) Polyketide_cyc PF03364.15 gi|336254060|ref|YP_004597167.1| - 0.00013 21.9 0.2 0.00017 21.5 0.1 1.2 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport AHSA1 PF08327.6 gi|336254060|ref|YP_004597167.1| - 0.038 14.0 0.6 0.15 12.1 0.4 2.0 1 1 0 1 1 1 0 Activator of Hsp90 ATPase homolog 1-like protein FaeA PF04703.7 gi|336254061|ref|YP_004597168.1| - 0.0032 17.6 0.0 0.0041 17.2 0.0 1.2 1 0 0 1 1 1 1 FaeA-like protein HTH_24 PF13412.1 gi|336254061|ref|YP_004597168.1| - 0.037 13.4 0.0 1.3 8.4 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|336254061|ref|YP_004597168.1| - 0.094 12.2 0.0 0.6 9.6 0.0 2.0 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain NfeD PF01957.13 gi|336254062|ref|YP_004597169.1| - 0.17 12.0 3.1 0.19 11.8 2.2 1.0 1 0 0 1 1 1 0 NfeD-like C-terminal, partner-binding DUF3767 PF12597.3 gi|336254062|ref|YP_004597169.1| - 3.1 7.4 4.3 3.9 7.1 3.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3767) DUF2892 PF11127.3 gi|336254062|ref|YP_004597169.1| - 8.5 6.2 7.8 12 5.8 5.4 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2892) PhoU PF01895.14 gi|336254063|ref|YP_004597170.1| - 5.9e-14 52.2 2.0 7.3e-09 35.9 0.0 2.5 2 0 0 2 2 2 2 PhoU domain Antitoxin-MazE PF04014.13 gi|336254063|ref|YP_004597170.1| - 3.4e-07 29.8 0.0 6.7e-07 28.9 0.0 1.6 1 0 0 1 1 1 1 Antidote-toxin recognition MazE NAD_kinase PF01513.16 gi|336254064|ref|YP_004597171.1| - 3.4e-38 131.0 0.8 6.6e-38 130.1 0.5 1.5 1 1 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.19 gi|336254064|ref|YP_004597171.1| - 3.9e-05 23.0 1.4 9.3e-05 21.8 0.2 2.2 2 0 0 2 2 2 1 Diacylglycerol kinase catalytic domain HDPD PF02924.9 gi|336254064|ref|YP_004597171.1| - 0.17 11.6 2.4 0.39 10.5 1.7 1.6 1 0 0 1 1 1 0 Bacteriophage lambda head decoration protein D MoCF_biosynth PF00994.19 gi|336254066|ref|YP_004597173.1| - 3.5e-38 130.2 0.1 6.2e-38 129.4 0.1 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain Peptidase_S8 PF00082.17 gi|336254066|ref|YP_004597173.1| - 0.15 11.1 0.0 0.23 10.5 0.0 1.2 1 0 0 1 1 1 0 Subtilase family HTH_20 PF12840.2 gi|336254067|ref|YP_004597174.1| - 1.7e-07 30.9 0.1 3.6e-07 29.8 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.14 gi|336254067|ref|YP_004597174.1| - 0.00039 20.0 0.0 0.00066 19.3 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|336254067|ref|YP_004597174.1| - 0.00089 18.5 0.1 0.0027 17.0 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding RP-C PF03428.8 gi|336254067|ref|YP_004597174.1| - 0.0039 16.6 0.0 0.0054 16.2 0.0 1.3 1 0 0 1 1 1 1 Replication protein C N-terminal domain PadR PF03551.9 gi|336254067|ref|YP_004597174.1| - 0.042 13.6 0.0 0.069 12.9 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_36 PF13730.1 gi|336254067|ref|YP_004597174.1| - 0.081 13.0 0.0 0.16 12.0 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.2 gi|336254067|ref|YP_004597174.1| - 0.13 11.9 0.1 0.21 11.2 0.1 1.3 1 0 0 1 1 1 0 MarR family PTPS PF01242.14 gi|336254068|ref|YP_004597175.1| - 7.5e-24 83.7 0.0 1e-23 83.3 0.0 1.1 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase HHH_7 PF14635.1 gi|336254068|ref|YP_004597175.1| - 0.14 12.2 0.1 0.2 11.7 0.1 1.2 1 0 0 1 1 1 0 Helix-hairpin-helix motif Radical_SAM PF04055.16 gi|336254069|ref|YP_004597176.1| - 4.8e-29 101.6 0.5 1.1e-28 100.5 0.4 1.6 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|336254069|ref|YP_004597176.1| - 6.7e-19 68.0 0.0 1.1e-18 67.3 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|336254069|ref|YP_004597176.1| - 1.5e-12 47.8 0.0 2.1e-12 47.3 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain TP_methylase PF00590.15 gi|336254069|ref|YP_004597176.1| - 0.021 14.5 0.0 0.16 11.6 0.0 2.0 2 0 0 2 2 2 0 Tetrapyrrole (Corrin/Porphyrin) Methylases QueC PF06508.8 gi|336254070|ref|YP_004597177.1| - 4.7e-73 244.9 0.0 5.3e-73 244.7 0.0 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ThiI PF02568.9 gi|336254070|ref|YP_004597177.1| - 1.9e-08 33.9 0.0 5.8e-08 32.4 0.0 1.7 2 1 0 2 2 2 1 Thiamine biosynthesis protein (ThiI) tRNA_Me_trans PF03054.11 gi|336254070|ref|YP_004597177.1| - 0.00026 19.6 0.0 0.00034 19.2 0.0 1.1 1 0 0 1 1 1 1 tRNA methyl transferase Asn_synthase PF00733.16 gi|336254070|ref|YP_004597177.1| - 0.004 16.6 0.1 0.0075 15.7 0.1 1.4 1 0 0 1 1 1 1 Asparagine synthase NAD_synthase PF02540.12 gi|336254070|ref|YP_004597177.1| - 0.019 13.8 0.0 0.033 13.0 0.0 1.4 1 1 0 1 1 1 0 NAD synthase Usp PF00582.21 gi|336254070|ref|YP_004597177.1| - 0.085 13.0 0.1 0.18 11.9 0.1 1.6 1 1 0 1 1 1 0 Universal stress protein family PTR2 PF00854.16 gi|336254071|ref|YP_004597178.1| - 0.075 11.8 3.0 0.085 11.6 2.1 1.0 1 0 0 1 1 1 0 POT family DUF202 PF02656.10 gi|336254071|ref|YP_004597178.1| - 0.45 10.7 2.1 0.4 10.9 0.7 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF202) ADH_zinc_N PF00107.21 gi|336254072|ref|YP_004597179.1| - 1.5e-22 79.5 0.2 2.7e-22 78.7 0.2 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|336254072|ref|YP_004597179.1| - 2.2e-22 80.3 1.3 6e-22 78.8 0.2 2.0 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|336254072|ref|YP_004597179.1| - 2.3e-08 33.7 0.5 6e-08 32.4 0.0 1.9 2 1 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain adh_short PF00106.20 gi|336254072|ref|YP_004597179.1| - 0.032 14.1 0.3 0.06 13.2 0.2 1.5 1 0 0 1 1 1 0 short chain dehydrogenase BPD_transp_1 PF00528.17 gi|336254073|ref|YP_004597180.1| - 0.67 9.4 5.9 0.14 11.6 0.4 1.9 1 1 1 2 2 2 0 Binding-protein-dependent transport system inner membrane component Fe-ADH PF00465.14 gi|336254074|ref|YP_004597181.1| - 6e-62 209.4 4.3 6.8e-62 209.2 3.0 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.1 gi|336254074|ref|YP_004597181.1| - 1.7e-09 37.3 0.1 5.7e-07 29.1 0.0 2.1 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.15 gi|336254074|ref|YP_004597181.1| - 0.47 9.3 2.6 2.1 7.2 0.0 2.7 3 0 0 3 3 3 0 3-dehydroquinate synthase AAA_12 PF13087.1 gi|336254075|ref|YP_004597182.1| - 1.6e-46 158.2 0.0 1.1e-45 155.4 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_11 PF13086.1 gi|336254075|ref|YP_004597182.1| - 9.5e-33 113.7 0.4 1e-15 57.9 0.1 2.8 3 0 0 3 3 3 2 AAA domain AAA_19 PF13245.1 gi|336254075|ref|YP_004597182.1| - 1e-14 54.0 3.1 3e-11 42.9 0.1 3.5 3 1 0 3 3 3 2 Part of AAA domain AAA_30 PF13604.1 gi|336254075|ref|YP_004597182.1| - 1.2e-13 51.0 0.2 4.6e-13 49.1 0.1 2.0 2 0 0 2 2 2 1 AAA domain Viral_helicase1 PF01443.13 gi|336254075|ref|YP_004597182.1| - 1.2e-08 34.7 0.0 0.00041 19.9 0.0 3.2 3 0 0 3 3 3 2 Viral (Superfamily 1) RNA helicase AAA_16 PF13191.1 gi|336254075|ref|YP_004597182.1| - 6.9e-05 22.9 0.5 0.0049 16.8 0.0 2.6 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|336254075|ref|YP_004597182.1| - 0.00012 22.1 0.1 0.0074 16.4 0.0 2.7 2 1 0 2 2 2 1 AAA domain DUF2075 PF09848.4 gi|336254075|ref|YP_004597182.1| - 0.0014 17.6 0.0 0.0039 16.2 0.0 1.8 1 1 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) Helicase_RecD PF05127.9 gi|336254075|ref|YP_004597182.1| - 0.0067 16.0 0.0 0.014 15.0 0.0 1.5 1 0 0 1 1 1 1 Helicase ResIII PF04851.10 gi|336254075|ref|YP_004597182.1| - 0.0072 16.1 0.0 0.05 13.4 0.0 2.1 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit UvrD-helicase PF00580.16 gi|336254075|ref|YP_004597182.1| - 0.013 14.8 0.0 0.027 13.7 0.0 1.5 2 0 0 2 2 2 0 UvrD/REP helicase N-terminal domain AAA PF00004.24 gi|336254075|ref|YP_004597182.1| - 0.016 15.4 2.3 0.18 11.9 0.1 3.1 3 1 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) UvrD_C_2 PF13538.1 gi|336254075|ref|YP_004597182.1| - 0.017 15.2 0.0 0.037 14.1 0.0 1.6 1 0 0 1 1 1 0 UvrD-like helicase C-terminal domain AAA_25 PF13481.1 gi|336254075|ref|YP_004597182.1| - 0.019 14.3 0.1 0.54 9.6 0.0 2.6 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|336254075|ref|YP_004597182.1| - 0.057 14.2 1.8 0.23 12.2 0.0 2.9 3 1 0 3 3 2 0 AAA domain PhoH PF02562.11 gi|336254075|ref|YP_004597182.1| - 0.088 12.0 0.0 1.5 8.0 0.0 2.3 2 0 0 2 2 2 0 PhoH-like protein Arch_ATPase PF01637.13 gi|336254075|ref|YP_004597182.1| - 0.11 12.1 0.0 0.19 11.3 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase TrwB_AAD_bind PF10412.4 gi|336254075|ref|YP_004597182.1| - 0.12 10.9 0.0 0.19 10.3 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain PIF1 PF05970.9 gi|336254075|ref|YP_004597182.1| - 0.33 9.8 0.0 4.7 6.0 0.0 2.2 2 0 0 2 2 2 0 PIF1-like helicase tRNA_anti-codon PF01336.20 gi|336254076|ref|YP_004597183.1| - 1.2e-05 25.0 7.4 0.0095 15.7 0.0 4.3 4 0 0 4 4 4 3 OB-fold nucleic acid binding domain Metallophos_2 PF12850.2 gi|336254078|ref|YP_004597185.1| - 1.1e-06 28.5 0.1 2.4e-06 27.4 0.1 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|336254078|ref|YP_004597185.1| - 0.0012 18.3 0.1 0.015 14.7 0.1 2.1 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Oxidored_molyb PF00174.14 gi|336254079|ref|YP_004597186.1| - 5.8e-13 48.5 0.0 7.3e-13 48.2 0.0 1.1 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain SNF PF00209.13 gi|336254081|ref|YP_004597188.1| - 6e-57 193.2 35.3 3.2e-31 108.4 12.7 2.0 2 0 0 2 2 2 2 Sodium:neurotransmitter symporter family Carboxyl_trans PF01039.17 gi|336254082|ref|YP_004597189.1| - 8.5e-200 664.2 0.0 9.7e-200 664.0 0.0 1.0 1 0 0 1 1 1 1 Carboxyl transferase domain MdcE PF06833.6 gi|336254082|ref|YP_004597189.1| - 4.1e-05 22.8 0.0 8.4e-05 21.8 0.0 1.4 1 0 0 1 1 1 1 Malonate decarboxylase gamma subunit (MdcE) BIV_Env PF05858.7 gi|336254082|ref|YP_004597189.1| - 0.32 8.9 1.0 0.43 8.4 0.7 1.1 1 0 0 1 1 1 0 Bovine immunodeficiency virus surface protein (SU) DUF1466 PF07326.6 gi|336254083|ref|YP_004597190.1| - 0.1 11.8 2.1 0.14 11.4 1.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1466) OAD_gamma PF04277.8 gi|336254083|ref|YP_004597190.1| - 6.4 7.2 12.7 0.57 10.6 5.0 2.2 1 1 1 2 2 2 0 Oxaloacetate decarboxylase, gamma chain Methyltransf_11 PF08241.7 gi|336254084|ref|YP_004597191.1| - 1e-10 41.9 0.0 2e-09 37.8 0.0 2.5 3 0 0 3 3 3 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|336254084|ref|YP_004597191.1| - 1.1e-10 41.5 0.3 3.3e-10 40.0 0.1 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|336254084|ref|YP_004597191.1| - 1.8e-08 34.2 0.0 2.8e-08 33.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|336254084|ref|YP_004597191.1| - 1.3e-05 25.6 0.0 2.5e-05 24.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|336254084|ref|YP_004597191.1| - 2.5e-05 23.4 0.0 2.8e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_18 PF12847.2 gi|336254084|ref|YP_004597191.1| - 9.6e-05 22.9 0.0 0.00018 22.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|336254084|ref|YP_004597191.1| - 0.0017 18.6 0.0 0.0031 17.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|336254084|ref|YP_004597191.1| - 0.034 13.5 0.0 0.078 12.3 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|336254084|ref|YP_004597191.1| - 0.039 13.5 0.0 0.053 13.1 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|336254084|ref|YP_004597191.1| - 0.074 12.4 0.0 0.11 11.8 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 95 CPSase_L_D2 PF02786.12 gi|336254085|ref|YP_004597192.1| - 2.1e-72 242.8 0.1 9.3e-72 240.7 0.0 2.0 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_chain PF00289.17 gi|336254085|ref|YP_004597192.1| - 6.2e-43 145.3 0.2 4.3e-42 142.6 0.2 2.3 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, N-terminal domain Biotin_carb_C PF02785.14 gi|336254085|ref|YP_004597192.1| - 6.1e-34 116.2 0.0 1.3e-33 115.2 0.0 1.6 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain Biotin_lipoyl PF00364.17 gi|336254085|ref|YP_004597192.1| - 1.6e-16 59.6 7.2 4.6e-16 58.2 5.0 1.8 1 0 0 1 1 1 1 Biotin-requiring enzyme ATP-grasp_4 PF13535.1 gi|336254085|ref|YP_004597192.1| - 1.8e-14 53.8 0.1 4e-14 52.7 0.1 1.5 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|336254085|ref|YP_004597192.1| - 1.6e-10 40.2 0.0 5.8e-09 35.1 0.0 2.1 2 0 0 2 2 2 1 ATP-grasp in the biosynthetic pathway with Ter operon Biotin_lipoyl_2 PF13533.1 gi|336254085|ref|YP_004597192.1| - 1.5e-08 34.1 2.5 0.00011 21.7 0.1 2.7 1 1 1 2 2 2 2 Biotin-lipoyl like Dala_Dala_lig_C PF07478.8 gi|336254085|ref|YP_004597192.1| - 1.6e-06 27.6 0.0 3.6e-06 26.5 0.0 1.6 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp PF02222.17 gi|336254085|ref|YP_004597192.1| - 2.3e-06 27.0 0.0 4.7e-06 26.0 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.14 gi|336254085|ref|YP_004597192.1| - 7.6e-05 22.3 0.0 0.00015 21.4 0.0 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain HlyD PF00529.15 gi|336254085|ref|YP_004597192.1| - 0.00096 18.5 4.0 0.047 12.9 0.3 2.4 1 1 1 2 2 2 2 HlyD family secretion protein HlyD_2 PF12700.2 gi|336254085|ref|YP_004597192.1| - 0.0037 16.4 1.6 0.02 14.0 0.2 2.2 1 1 1 2 2 2 1 HlyD family secretion protein RimK PF08443.6 gi|336254085|ref|YP_004597192.1| - 0.0054 16.2 0.0 0.084 12.3 0.0 2.2 2 0 0 2 2 2 1 RimK-like ATP-grasp domain HlyD_3 PF13437.1 gi|336254085|ref|YP_004597192.1| - 0.007 16.6 1.2 2 8.8 0.1 2.8 2 0 0 2 2 2 1 HlyD family secretion protein GCV_H PF01597.14 gi|336254085|ref|YP_004597192.1| - 0.023 14.3 2.3 0.058 13.0 1.1 2.1 2 0 0 2 2 2 0 Glycine cleavage H-protein RnfC_N PF13375.1 gi|336254085|ref|YP_004597192.1| - 0.025 14.3 0.4 0.14 11.9 0.2 2.2 2 1 0 2 2 2 0 RnfC Barrel sandwich hybrid domain Radical_SAM PF04055.16 gi|336254086|ref|YP_004597193.1| - 7.5e-21 75.0 0.0 1.1e-20 74.4 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|336254086|ref|YP_004597193.1| - 4.4e-05 23.6 0.0 7e-05 22.9 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|336254086|ref|YP_004597193.1| - 0.00013 21.9 0.0 0.00023 21.1 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain TP_methylase PF00590.15 gi|336254086|ref|YP_004597193.1| - 0.0031 17.2 0.1 0.0067 16.1 0.0 1.6 1 1 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases DUF1906 PF08924.6 gi|336254086|ref|YP_004597193.1| - 0.017 14.9 0.0 0.032 14.0 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1906) DAGK_cat PF00781.19 gi|336254086|ref|YP_004597193.1| - 0.026 13.9 0.0 0.051 13.0 0.0 1.4 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain PaaB PF06243.6 gi|336254087|ref|YP_004597194.1| - 4.4e-16 58.7 0.1 5.4e-16 58.5 0.1 1.1 1 0 0 1 1 1 1 Phenylacetic acid degradation B DUF1628 PF07790.6 gi|336254088|ref|YP_004597195.1| - 4.6e-17 62.5 0.5 6.9e-17 61.9 0.3 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1628) ThiS PF02597.15 gi|336254090|ref|YP_004597197.1| - 5e-06 26.8 0.1 4.4e-05 23.8 0.1 2.1 1 1 0 1 1 1 1 ThiS family PsbX PF06596.6 gi|336254093|ref|YP_004597200.1| - 0.16 11.7 2.8 0.19 11.4 2.0 1.1 1 0 0 1 1 1 0 Photosystem II reaction centre X protein (PsbX) DUF347 PF03988.7 gi|336254093|ref|YP_004597200.1| - 0.24 11.3 1.9 0.27 11.1 1.3 1.0 1 0 0 1 1 1 0 Repeat of Unknown Function (DUF347) Baculo_11_kDa PF06143.6 gi|336254093|ref|YP_004597200.1| - 0.73 9.2 3.0 0.66 9.3 2.1 1.0 1 0 0 1 1 1 0 Baculovirus 11 kDa family DUF3317 PF11779.3 gi|336254093|ref|YP_004597200.1| - 0.76 9.2 3.2 0.84 9.1 2.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3317) OppC_N PF12911.2 gi|336254093|ref|YP_004597200.1| - 2.4 7.6 4.0 2.5 7.5 2.8 1.1 1 0 0 1 1 1 0 N-terminal TM domain of oligopeptide transport permease C HD PF01966.17 gi|336254094|ref|YP_004597201.1| - 2.2e-11 43.8 1.7 5.2e-11 42.6 1.2 1.7 1 0 0 1 1 1 1 HD domain DNA_ligase_A_M PF01068.16 gi|336254095|ref|YP_004597202.1| - 3.1e-43 147.5 0.0 5.8e-43 146.6 0.0 1.5 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.9 gi|336254095|ref|YP_004597202.1| - 4.8e-43 147.0 0.0 5.8e-41 140.2 0.0 2.4 1 1 1 2 2 2 2 DNA ligase N terminus DNA_ligase_A_C PF04679.10 gi|336254095|ref|YP_004597202.1| - 1.8e-17 63.5 0.0 5.8e-17 61.8 0.0 1.9 2 0 0 2 2 2 1 ATP dependent DNA ligase C terminal region mRNA_cap_enzyme PF01331.14 gi|336254095|ref|YP_004597202.1| - 0.14 11.7 0.0 12 5.4 0.0 2.2 2 0 0 2 2 2 0 mRNA capping enzyme, catalytic domain UPF0052 PF01933.13 gi|336254097|ref|YP_004597204.1| - 1.3e-44 152.7 0.0 1.8e-44 152.3 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0052 Dus PF01207.12 gi|336254098|ref|YP_004597205.1| - 4.7e-08 32.2 1.1 3e-07 29.5 0.7 1.9 1 1 0 1 1 1 1 Dihydrouridine synthase (Dus) His_biosynth PF00977.16 gi|336254098|ref|YP_004597205.1| - 0.00061 19.1 0.0 0.0011 18.2 0.0 1.4 1 1 0 1 1 1 1 Histidine biosynthesis protein Radical_SAM PF04055.16 gi|336254098|ref|YP_004597205.1| - 0.00069 19.8 0.2 0.068 13.3 0.0 2.7 1 1 2 3 3 3 1 Radical SAM superfamily PcrB PF01884.12 gi|336254098|ref|YP_004597205.1| - 0.0073 15.5 0.0 0.011 14.9 0.0 1.3 1 0 0 1 1 1 1 PcrB family NMO PF03060.10 gi|336254098|ref|YP_004597205.1| - 0.01 15.0 0.0 0.016 14.3 0.0 1.2 1 0 0 1 1 1 0 Nitronate monooxygenase DUF1633 PF07794.6 gi|336254098|ref|YP_004597205.1| - 0.019 12.9 2.3 0.023 12.6 1.6 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1633) FMN_dh PF01070.13 gi|336254098|ref|YP_004597205.1| - 0.023 13.5 0.6 0.061 12.1 0.1 1.8 1 1 1 2 2 2 0 FMN-dependent dehydrogenase PEP_mutase PF13714.1 gi|336254098|ref|YP_004597205.1| - 0.037 13.2 2.3 0.056 12.6 1.1 1.6 1 1 1 2 2 2 0 Phosphoenolpyruvate phosphomutase IGPS PF00218.16 gi|336254098|ref|YP_004597205.1| - 0.048 12.7 0.0 0.14 11.1 0.0 1.7 2 1 0 2 2 2 0 Indole-3-glycerol phosphate synthase SBP_bac_6 PF13343.1 gi|336254099|ref|YP_004597206.1| - 0.024 13.9 0.0 0.03 13.6 0.0 1.2 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein DUF604 PF04646.7 gi|336254099|ref|YP_004597206.1| - 0.16 11.1 0.0 0.22 10.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF604 Methyltransf_25 PF13649.1 gi|336254101|ref|YP_004597208.1| - 0.11 12.9 0.0 0.24 11.7 0.0 1.7 1 1 0 1 1 1 0 Methyltransferase domain DHH PF01368.15 gi|336254102|ref|YP_004597209.1| - 3e-10 39.9 0.0 5.9e-10 38.9 0.0 1.5 1 0 0 1 1 1 1 DHH family tRNA_anti-codon PF01336.20 gi|336254102|ref|YP_004597209.1| - 1e-09 38.1 0.0 2.1e-09 37.1 0.0 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain S1 PF00575.18 gi|336254102|ref|YP_004597209.1| - 0.00098 19.1 0.2 0.0035 17.3 0.1 2.0 1 0 0 1 1 1 1 S1 RNA binding domain Rib_5-P_isom_A PF06026.9 gi|336254102|ref|YP_004597209.1| - 0.012 14.9 0.0 0.022 14.0 0.0 1.4 1 0 0 1 1 1 0 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) Phe_tRNA-synt_N PF02912.13 gi|336254102|ref|YP_004597209.1| - 0.57 9.9 4.3 14 5.4 0.0 3.3 3 0 0 3 3 3 0 Aminoacyl tRNA synthetase class II, N-terminal domain Usp PF00582.21 gi|336254103|ref|YP_004597210.1| - 7.6e-16 58.5 0.6 1e-15 58.1 0.4 1.2 1 0 0 1 1 1 1 Universal stress protein family GntP_permease PF02447.11 gi|336254104|ref|YP_004597211.1| - 2.8e-95 319.3 33.1 3.2e-95 319.2 22.9 1.0 1 0 0 1 1 1 1 GntP family permease Pox_A14 PF05767.7 gi|336254104|ref|YP_004597211.1| - 3.4 7.7 13.3 4.4 7.3 0.6 4.0 4 0 0 4 4 4 0 Poxvirus virion envelope protein A14 Prok-JAB PF14464.1 gi|336254105|ref|YP_004597212.1| - 1.7e-13 50.0 0.0 2.2e-13 49.6 0.0 1.1 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain JAB PF01398.16 gi|336254105|ref|YP_004597212.1| - 0.039 13.6 0.0 0.13 11.9 0.0 1.8 1 1 0 1 1 1 0 JAB1/Mov34/MPN/PAD-1 ubiquitin protease RadC PF04002.10 gi|336254105|ref|YP_004597212.1| - 0.045 13.4 0.0 0.072 12.7 0.0 1.4 1 0 0 1 1 1 0 RadC-like JAB domain Toxin-JAB1 PF15659.1 gi|336254105|ref|YP_004597212.1| - 0.047 13.5 0.0 0.068 13.0 0.0 1.2 1 0 0 1 1 1 0 JAB-like toxin 1 CTP_transf_2 PF01467.21 gi|336254106|ref|YP_004597213.1| - 1.9e-13 50.7 0.5 2.8e-13 50.2 0.4 1.4 1 1 0 1 1 1 1 Cytidylyltransferase FAD_syn PF06574.7 gi|336254106|ref|YP_004597213.1| - 0.13 11.8 0.1 0.23 11.0 0.1 1.4 1 0 0 1 1 1 0 FAD synthetase P3A PF08727.6 gi|336254107|ref|YP_004597214.1| - 1.9 7.8 4.4 1.5 8.1 0.5 2.0 2 0 0 2 2 2 0 Poliovirus 3A protein like ILVD_EDD PF00920.16 gi|336254108|ref|YP_004597215.1| - 2.8e-204 679.3 1.3 3.2e-204 679.1 0.9 1.0 1 0 0 1 1 1 1 Dehydratase family NTP_transf_3 PF12804.2 gi|336254109|ref|YP_004597216.1| - 1.2e-30 106.7 1.7 1.6e-30 106.3 1.1 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.14 gi|336254109|ref|YP_004597216.1| - 0.0072 15.9 0.0 0.026 14.1 0.0 1.8 2 1 0 2 2 2 1 Cytidylyltransferase GHMP_kinases_N PF00288.21 gi|336254111|ref|YP_004597218.1| - 1.6e-07 31.2 0.9 2.6e-07 30.6 0.1 1.8 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|336254111|ref|YP_004597218.1| - 1.6e-05 24.9 0.4 2.9e-05 24.1 0.3 1.4 1 0 0 1 1 1 1 GHMP kinases C terminal KaiC PF06745.8 gi|336254112|ref|YP_004597219.1| - 1e-06 28.0 0.1 0.00088 18.4 0.0 2.2 2 0 0 2 2 2 2 KaiC AAA_25 PF13481.1 gi|336254112|ref|YP_004597219.1| - 2.3e-05 23.8 0.8 0.074 12.4 0.0 2.2 2 0 0 2 2 2 2 AAA domain Rad51 PF08423.6 gi|336254112|ref|YP_004597219.1| - 0.084 11.7 0.0 0.51 9.1 0.0 2.0 2 0 0 2 2 2 0 Rad51 Erp_C PF06780.6 gi|336254113|ref|YP_004597220.1| - 0.0031 17.3 0.5 0.0049 16.7 0.3 1.3 1 0 0 1 1 1 1 Erp protein C-terminus IncA PF04156.9 gi|336254113|ref|YP_004597220.1| - 0.0045 16.5 1.9 0.0077 15.8 1.3 1.5 1 0 0 1 1 1 1 IncA protein PSD2 PF07624.6 gi|336254113|ref|YP_004597220.1| - 0.0051 16.4 0.2 0.57 9.8 0.0 2.5 2 0 0 2 2 2 1 Protein of unknown function (DUF1585) Laminin_I PF06008.9 gi|336254113|ref|YP_004597220.1| - 0.013 14.8 1.1 0.013 14.8 0.8 2.2 1 1 1 2 2 2 0 Laminin Domain I MAP65_ASE1 PF03999.7 gi|336254113|ref|YP_004597220.1| - 0.018 13.6 0.7 0.025 13.2 0.5 1.1 1 0 0 1 1 1 0 Microtubule associated protein (MAP65/ASE1 family) Mod_r PF07200.8 gi|336254113|ref|YP_004597220.1| - 0.02 14.8 1.5 0.94 9.3 0.1 2.3 1 1 1 2 2 2 0 Modifier of rudimentary (Mod(r)) protein HypA PF01155.14 gi|336254113|ref|YP_004597220.1| - 0.034 13.8 0.2 0.072 12.7 0.1 1.5 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Syntaxin-6_N PF09177.6 gi|336254113|ref|YP_004597220.1| - 0.047 14.0 3.7 0.072 13.5 0.8 2.5 2 1 1 3 3 2 0 Syntaxin 6, N-terminal FlaC_arch PF05377.6 gi|336254113|ref|YP_004597220.1| - 0.071 13.0 0.2 3.2 7.6 0.0 2.4 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) DUF4200 PF13863.1 gi|336254113|ref|YP_004597220.1| - 0.072 13.0 4.7 0.56 10.1 0.2 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4200) Syntaxin PF00804.20 gi|336254113|ref|YP_004597220.1| - 0.093 12.8 0.0 0.2 11.8 0.0 1.6 1 0 0 1 1 1 0 Syntaxin Zn_Tnp_IS91 PF14319.1 gi|336254113|ref|YP_004597220.1| - 0.1 12.1 0.1 0.18 11.3 0.0 1.4 1 0 0 1 1 1 0 Transposase zinc-binding domain zf-C3HC4_3 PF13920.1 gi|336254113|ref|YP_004597220.1| - 0.13 11.9 0.5 0.26 10.9 0.3 1.5 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) PhnA_Zn_Ribbon PF08274.7 gi|336254113|ref|YP_004597220.1| - 0.42 10.4 3.3 2.8 7.7 0.3 2.3 2 0 0 2 2 2 0 PhnA Zinc-Ribbon Latarcin PF10279.4 gi|336254113|ref|YP_004597220.1| - 0.48 10.6 6.3 1.5 9.0 0.1 2.4 2 0 0 2 2 2 0 Latarcin precursor FUSC PF04632.7 gi|336254113|ref|YP_004597220.1| - 0.63 8.4 13.6 0.24 9.8 7.3 1.7 1 1 1 2 2 2 0 Fusaric acid resistance protein family DUF2746 PF10874.3 gi|336254113|ref|YP_004597220.1| - 0.87 9.8 11.3 0.71 10.1 1.3 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2746) DinB_2 PF12867.2 gi|336254113|ref|YP_004597220.1| - 2.3 8.5 9.1 1.7 8.9 0.3 2.6 2 1 1 3 3 2 0 DinB superfamily TFIIS_C PF01096.13 gi|336254115|ref|YP_004597222.1| - 9.1e-17 60.4 3.9 9.1e-17 60.4 2.7 3.0 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) DZR PF12773.2 gi|336254115|ref|YP_004597222.1| - 4.2e-08 32.8 8.2 9.8e-05 22.1 1.2 2.3 2 0 0 2 2 2 2 Double zinc ribbon RNA_POL_M_15KD PF02150.11 gi|336254115|ref|YP_004597222.1| - 9.2e-08 31.6 1.5 9.2e-08 31.6 1.1 2.9 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit OrfB_Zn_ribbon PF07282.6 gi|336254115|ref|YP_004597222.1| - 9.3e-06 25.2 12.7 0.0016 18.0 2.2 2.7 2 1 0 2 2 2 2 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.2 gi|336254115|ref|YP_004597222.1| - 0.00025 20.7 7.8 0.00098 18.8 0.5 2.9 2 1 1 3 3 3 1 Transposase zinc-ribbon domain Prok-RING_1 PF14446.1 gi|336254115|ref|YP_004597222.1| - 0.00048 19.7 11.8 0.0045 16.6 1.5 3.2 3 0 0 3 3 3 1 Prokaryotic RING finger family 1 Nudix_N_2 PF14803.1 gi|336254115|ref|YP_004597222.1| - 0.0035 16.9 12.2 0.18 11.5 2.0 4.1 3 1 0 3 3 3 1 Nudix N-terminal GATA PF00320.22 gi|336254115|ref|YP_004597222.1| - 0.004 16.4 6.1 2.1 7.7 0.6 3.8 3 1 0 3 3 3 1 GATA zinc finger Cytochrome_C554 PF13435.1 gi|336254115|ref|YP_004597222.1| - 0.0068 16.4 2.7 0.0096 15.9 1.9 1.3 1 0 0 1 1 1 1 Cytochrome c554 and c-prime ADK_lid PF05191.9 gi|336254115|ref|YP_004597222.1| - 0.0069 16.0 9.3 1.4 8.6 0.1 4.1 4 0 0 4 4 4 1 Adenylate kinase, active site lid HypA PF01155.14 gi|336254115|ref|YP_004597222.1| - 0.0082 15.8 9.9 0.26 11.0 1.6 2.4 1 1 1 2 2 2 2 Hydrogenase expression/synthesis hypA family TF_Zn_Ribbon PF08271.7 gi|336254115|ref|YP_004597222.1| - 0.013 14.7 16.4 2.2 7.6 0.6 4.3 3 2 0 3 3 3 0 TFIIB zinc-binding PhnA_Zn_Ribbon PF08274.7 gi|336254115|ref|YP_004597222.1| - 0.017 14.8 10.6 2.5 7.9 0.1 4.1 4 0 0 4 4 4 0 PhnA Zinc-Ribbon zinc_ribbon_2 PF13240.1 gi|336254115|ref|YP_004597222.1| - 0.032 13.7 13.1 6.5 6.3 0.1 4.0 3 1 1 4 4 4 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|336254115|ref|YP_004597222.1| - 0.046 12.9 15.6 0.68 9.2 2.2 4.1 4 1 1 5 5 4 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|336254115|ref|YP_004597222.1| - 0.057 12.8 13.5 0.52 9.8 0.2 3.8 3 1 1 4 4 4 0 DNA directed RNA polymerase, 7 kDa subunit DUF2387 PF09526.5 gi|336254115|ref|YP_004597222.1| - 0.062 13.2 9.2 0.91 9.4 1.4 2.4 2 1 0 2 2 2 0 Probable metal-binding protein (DUF2387) zinc_ribbon_5 PF13719.1 gi|336254115|ref|YP_004597222.1| - 0.063 12.8 9.7 0.21 11.1 0.2 3.6 3 1 1 4 4 4 0 zinc-ribbon domain GFA PF04828.9 gi|336254115|ref|YP_004597222.1| - 0.077 12.9 12.2 1.9 8.4 0.1 3.9 1 1 3 4 4 4 0 Glutathione-dependent formaldehyde-activating enzyme zf-piccolo PF05715.8 gi|336254115|ref|YP_004597222.1| - 0.083 12.9 7.7 0.18 11.8 0.0 3.3 1 1 2 3 3 3 0 Piccolo Zn-finger zf-RING_5 PF14634.1 gi|336254115|ref|YP_004597222.1| - 0.085 12.6 10.8 1.3 8.8 0.8 3.2 2 1 0 2 2 2 0 zinc-RING finger domain zinc_ribbon_4 PF13717.1 gi|336254115|ref|YP_004597222.1| - 0.089 12.4 10.3 0.25 11.0 0.3 3.5 3 1 0 3 3 3 0 zinc-ribbon domain DUF2039 PF10217.4 gi|336254115|ref|YP_004597222.1| - 0.2 11.6 4.4 1.3 9.1 0.2 2.3 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2039) YhfH PF14149.1 gi|336254115|ref|YP_004597222.1| - 0.26 11.1 11.5 17 5.2 0.1 4.2 4 0 0 4 4 4 0 YhfH-like protein zf-trcl PF13451.1 gi|336254115|ref|YP_004597222.1| - 0.28 10.8 12.9 0.65 9.6 0.2 4.1 4 0 0 4 4 4 0 Probable zinc-binding domain UPF0547 PF10571.4 gi|336254115|ref|YP_004597222.1| - 0.37 10.5 12.0 1.9 8.2 0.5 3.8 4 0 0 4 4 4 0 Uncharacterised protein family UPF0547 Zn-ribbon_8 PF09723.5 gi|336254115|ref|YP_004597222.1| - 0.38 10.7 17.2 5.4 7.0 2.5 3.8 2 2 0 3 3 3 0 Zinc ribbon domain RRN7 PF11781.3 gi|336254115|ref|YP_004597222.1| - 0.4 10.2 14.9 5.5 6.5 0.1 4.1 3 1 0 3 3 3 0 RNA polymerase I-specific transcription initiation factor Rrn7 zf-C2HC5 PF06221.8 gi|336254115|ref|YP_004597222.1| - 0.57 9.9 3.2 1.7 8.4 0.2 2.7 3 0 0 3 3 3 0 Putative zinc finger motif, C2HC5-type zf-NADH-PPase PF09297.6 gi|336254115|ref|YP_004597222.1| - 0.6 9.6 13.9 2 7.9 2.7 3.9 3 1 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain DUF2318 PF10080.4 gi|336254115|ref|YP_004597222.1| - 0.74 9.6 9.4 0.56 10.0 1.4 2.8 1 1 1 2 2 2 0 Predicted membrane protein (DUF2318) FYVE PF01363.16 gi|336254115|ref|YP_004597222.1| - 0.87 9.5 6.6 2.9 7.8 4.6 2.0 1 1 0 1 1 1 0 FYVE zinc finger Lar_restr_allev PF14354.1 gi|336254115|ref|YP_004597222.1| - 1.2 9.4 16.8 3.9 7.8 0.4 3.7 1 1 2 3 3 3 0 Restriction alleviation protein Lar zf-IS66 PF13005.2 gi|336254115|ref|YP_004597222.1| - 1.5 8.8 11.4 74 3.4 2.7 4.1 3 1 0 3 3 3 0 zinc-finger binding domain of transposase IS66 PHD PF00628.24 gi|336254115|ref|YP_004597222.1| - 2 8.1 12.1 4 7.2 1.3 2.6 2 1 0 2 2 2 0 PHD-finger zf-CHY PF05495.7 gi|336254115|ref|YP_004597222.1| - 2 8.6 9.5 6 7.1 1.0 2.8 1 1 1 2 2 2 0 CHY zinc finger IBR PF01485.16 gi|336254115|ref|YP_004597222.1| - 2.3 8.1 11.3 7.4 6.5 1.2 3.1 2 1 0 2 2 2 0 IBR domain A2L_zn_ribbon PF08792.5 gi|336254115|ref|YP_004597222.1| - 3.4 7.2 15.7 8 6.0 2.4 4.0 3 1 0 3 3 3 0 A2L zinc ribbon domain zinc-ribbons_6 PF07191.7 gi|336254115|ref|YP_004597222.1| - 4.7 7.0 9.5 0.44 10.3 0.6 2.6 2 1 0 2 2 2 0 zinc-ribbons Nop10p PF04135.7 gi|336254115|ref|YP_004597222.1| - 6.2 6.6 5.9 3.8 7.3 0.1 3.0 4 0 0 4 4 3 0 Nucleolar RNA-binding protein, Nop10p family Ribosomal_L44 PF00935.14 gi|336254115|ref|YP_004597222.1| - 7.5 6.6 6.1 55 3.8 0.1 3.4 3 1 1 4 4 4 0 Ribosomal protein L44 Cytochrom_CIII PF02085.11 gi|336254115|ref|YP_004597222.1| - 9 6.4 8.1 81 3.3 5.0 2.4 1 1 0 1 1 1 0 Class III cytochrome C family C1_1 PF00130.17 gi|336254115|ref|YP_004597222.1| - 9.2 6.0 10.6 2.1 8.1 0.9 2.8 2 1 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Copper-bind PF00127.15 gi|336254116|ref|YP_004597223.1| - 6e-07 29.6 0.0 1.2e-06 28.6 0.0 1.5 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family TAT_signal PF10518.4 gi|336254116|ref|YP_004597223.1| - 0.003 17.4 2.5 0.0057 16.5 1.7 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Yip1 PF04893.12 gi|336254117|ref|YP_004597224.1| - 0.034 13.6 12.9 0.056 12.9 8.9 1.3 1 0 0 1 1 1 0 Yip1 domain ABC2_membrane_3 PF12698.2 gi|336254117|ref|YP_004597224.1| - 0.55 9.2 10.7 6.8 5.6 7.4 1.9 2 0 0 2 2 2 0 ABC-2 family transporter protein Gly-zipper_Omp PF13488.1 gi|336254117|ref|YP_004597224.1| - 0.88 9.2 18.5 10 5.8 0.0 3.5 3 0 0 3 3 3 0 Glycine zipper Rick_17kDa_Anti PF05433.10 gi|336254117|ref|YP_004597224.1| - 3.5 7.3 23.0 1.8 8.2 0.4 3.8 4 1 0 4 4 4 0 Glycine zipper 2TM domain DUF4013 PF13197.1 gi|336254117|ref|YP_004597224.1| - 4 6.7 21.1 5.3 6.3 10.8 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF4013) IMS PF00817.15 gi|336254118|ref|YP_004597225.1| - 3.3e-37 127.5 0.1 5.9e-37 126.7 0.0 1.4 1 0 0 1 1 1 1 impB/mucB/samB family IMS_C PF11799.3 gi|336254118|ref|YP_004597225.1| - 3.5e-16 59.3 0.0 9.3e-16 57.9 0.0 1.7 1 0 0 1 1 1 1 impB/mucB/samB family C-terminal domain IMS_HHH PF11798.3 gi|336254118|ref|YP_004597225.1| - 8.3e-06 25.5 0.0 1.8e-05 24.5 0.0 1.6 1 0 0 1 1 1 1 IMS family HHH motif HHH_5 PF14520.1 gi|336254118|ref|YP_004597225.1| - 0.00049 20.2 0.9 0.0047 17.0 0.0 2.8 2 1 0 2 2 2 1 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.4 gi|336254118|ref|YP_004597225.1| - 0.023 14.2 0.0 0.047 13.2 0.0 1.4 1 0 0 1 1 1 0 Fingers domain of DNA polymerase lambda Cdd1 PF11731.3 gi|336254118|ref|YP_004597225.1| - 0.025 14.4 0.0 0.055 13.3 0.0 1.6 1 0 0 1 1 1 0 Pathogenicity locus UDG PF03167.14 gi|336254120|ref|YP_004597227.1| - 5.1e-10 39.0 0.0 6.3e-10 38.7 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily HTH_10 PF04967.7 gi|336254121|ref|YP_004597228.1| - 3.9e-16 58.3 0.0 6.2e-16 57.7 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.11 gi|336254121|ref|YP_004597228.1| - 1.9e-07 30.3 0.2 4.6e-07 29.0 0.0 1.7 2 0 0 2 2 2 1 Sigma-70, region 4 MarR_2 PF12802.2 gi|336254121|ref|YP_004597228.1| - 0.00029 20.4 0.0 0.00075 19.1 0.0 1.8 1 0 0 1 1 1 1 MarR family HTH_AsnC-type PF13404.1 gi|336254121|ref|YP_004597228.1| - 0.00078 18.9 0.4 0.0019 17.6 0.3 1.7 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|336254121|ref|YP_004597228.1| - 0.0011 18.2 0.1 0.0022 17.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Sigma70_r4_2 PF08281.7 gi|336254121|ref|YP_004597228.1| - 0.0062 15.9 0.0 0.015 14.7 0.0 1.6 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_1 PF00126.22 gi|336254121|ref|YP_004597228.1| - 0.091 12.5 0.0 0.89 9.3 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family DUF457 PF04307.9 gi|336254122|ref|YP_004597229.1| - 5.6e-22 77.7 12.1 6.8e-22 77.4 8.4 1.1 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) COX15-CtaA PF02628.10 gi|336254123|ref|YP_004597230.1| - 1.6e-22 79.7 27.9 1.9e-21 76.2 19.3 2.0 1 1 0 1 1 1 1 Cytochrome oxidase assembly protein Peptidase_M24 PF00557.19 gi|336254124|ref|YP_004597231.1| - 4.9e-21 75.2 3.6 7.1e-21 74.7 2.5 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|336254124|ref|YP_004597231.1| - 7.4e-07 29.7 0.2 2.5e-06 28.0 0.0 2.1 3 0 0 3 3 3 1 Creatinase/Prolidase N-terminal domain TrmB PF01978.14 gi|336254125|ref|YP_004597232.1| - 6.9e-09 35.2 0.1 1.1e-08 34.6 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|336254125|ref|YP_004597232.1| - 0.00028 20.2 0.0 0.00052 19.3 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|336254125|ref|YP_004597232.1| - 0.00059 19.5 0.1 0.0011 18.6 0.0 1.5 1 1 0 1 1 1 1 Helix-turn-helix domain TFIIE_alpha PF02002.12 gi|336254125|ref|YP_004597232.1| - 0.0045 16.4 0.0 0.0075 15.7 0.0 1.3 1 0 0 1 1 1 1 TFIIE alpha subunit GntR PF00392.16 gi|336254125|ref|YP_004597232.1| - 0.0051 16.2 0.1 0.013 14.9 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_IclR PF09339.5 gi|336254125|ref|YP_004597232.1| - 0.014 14.9 0.0 0.022 14.3 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_27 PF13463.1 gi|336254125|ref|YP_004597232.1| - 0.07 13.4 0.0 0.15 12.4 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_9 PF08221.6 gi|336254125|ref|YP_004597232.1| - 0.15 11.9 0.0 0.24 11.2 0.0 1.3 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain Topo-VIb_trans PF09239.6 gi|336254126|ref|YP_004597233.1| - 1.2e-65 219.9 0.0 2.4e-65 218.9 0.0 1.5 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.21 gi|336254126|ref|YP_004597233.1| - 3.6e-16 58.8 0.3 1.6e-15 56.8 0.0 2.2 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|336254126|ref|YP_004597233.1| - 5.8e-14 51.9 0.3 2.4e-13 49.9 0.0 2.2 3 0 0 3 3 3 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|336254126|ref|YP_004597233.1| - 0.00075 19.2 0.3 0.015 15.0 0.0 3.0 3 0 0 3 3 3 1 Histidine kinase-like ATPase domain Pex19 PF04614.7 gi|336254126|ref|YP_004597233.1| - 0.049 13.2 2.4 0.069 12.7 0.0 2.1 2 0 0 2 2 2 0 Pex19 protein family TP6A_N PF04406.9 gi|336254127|ref|YP_004597234.1| - 1.1e-20 73.0 0.1 2e-20 72.2 0.0 1.4 1 0 0 1 1 1 1 Type IIB DNA topoisomerase C1_3 PF07649.7 gi|336254128|ref|YP_004597235.1| - 0.0082 16.1 0.7 0.027 14.5 0.1 1.9 2 0 0 2 2 2 1 C1-like domain C1_2 PF03107.11 gi|336254128|ref|YP_004597235.1| - 0.15 12.1 0.4 0.25 11.4 0.1 1.5 2 0 0 2 2 2 0 C1 domain zinc_ribbon_2 PF13240.1 gi|336254129|ref|YP_004597236.1| - 7.9e-07 28.3 3.6 7.9e-07 28.3 2.5 2.4 3 0 0 3 3 3 1 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|336254129|ref|YP_004597236.1| - 2.3e-06 26.6 2.7 2.3e-06 26.6 1.9 2.1 2 0 0 2 2 2 1 zinc-ribbon domain DZR PF12773.2 gi|336254129|ref|YP_004597236.1| - 2.3e-06 27.3 6.1 2.4e-05 24.0 0.6 2.5 2 0 0 2 2 2 1 Double zinc ribbon DUF35_N PF12172.3 gi|336254129|ref|YP_004597236.1| - 0.00022 21.0 2.9 0.00061 19.6 2.0 1.8 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) Nudix_N_2 PF14803.1 gi|336254129|ref|YP_004597236.1| - 0.0049 16.5 11.8 0.33 10.6 0.0 4.3 4 0 0 4 4 4 2 Nudix N-terminal DUF4231 PF14015.1 gi|336254129|ref|YP_004597236.1| - 0.023 14.6 0.7 0.043 13.8 0.5 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF4231) zinc-ribbons_6 PF07191.7 gi|336254129|ref|YP_004597236.1| - 0.053 13.3 1.0 1.2 8.9 0.1 2.5 2 0 0 2 2 2 0 zinc-ribbons DUF2321 PF10083.4 gi|336254129|ref|YP_004597236.1| - 0.24 10.8 0.9 0.36 10.3 0.1 1.6 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2321) C1_1 PF00130.17 gi|336254129|ref|YP_004597236.1| - 0.63 9.8 4.5 0.8 9.4 0.1 2.6 2 1 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DUF1272 PF06906.6 gi|336254129|ref|YP_004597236.1| - 1.3 8.9 5.4 0.99 9.3 1.1 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1272) zf-NADH-PPase PF09297.6 gi|336254129|ref|YP_004597236.1| - 1.5 8.3 13.9 1.5 8.3 0.2 3.8 4 0 0 4 4 3 0 NADH pyrophosphatase zinc ribbon domain zf-TFIIB PF13453.1 gi|336254129|ref|YP_004597236.1| - 2.9 7.1 8.2 1.9 7.7 0.0 3.2 3 0 0 3 3 3 0 Transcription factor zinc-finger DNA_pol_viral_N PF00242.12 gi|336254129|ref|YP_004597236.1| - 5.1 6.0 9.1 8.6 5.2 6.3 1.3 1 0 0 1 1 1 0 DNA polymerase (viral) N-terminal domain DUF3367 PF11847.3 gi|336254129|ref|YP_004597236.1| - 7 4.4 9.0 0.092 10.6 0.2 2.0 2 1 0 2 2 2 0 Domain of unknown function (DUF3367) Lactamase_B_3 PF13483.1 gi|336254130|ref|YP_004597237.1| - 4e-33 114.4 0.0 5.2e-33 114.0 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|336254130|ref|YP_004597237.1| - 7.9e-07 28.8 0.1 1e-06 28.4 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain TFIIB PF00382.14 gi|336254131|ref|YP_004597238.1| - 2.3e-40 136.2 0.2 1.1e-21 76.4 0.0 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|336254131|ref|YP_004597238.1| - 3e-17 61.6 2.8 1.1e-16 59.8 2.2 1.8 2 0 0 2 2 2 1 TFIIB zinc-binding Cyclin_C PF02984.14 gi|336254131|ref|YP_004597238.1| - 0.0035 17.2 0.0 0.092 12.6 0.0 2.3 2 0 0 2 2 2 1 Cyclin, C-terminal domain DZR PF12773.2 gi|336254131|ref|YP_004597238.1| - 0.01 15.6 1.1 0.018 14.8 0.7 1.3 1 0 0 1 1 1 0 Double zinc ribbon OrfB_Zn_ribbon PF07282.6 gi|336254131|ref|YP_004597238.1| - 0.013 15.1 0.9 0.032 13.8 0.6 1.6 1 0 0 1 1 1 0 Putative transposase DNA-binding domain HTH_24 PF13412.1 gi|336254131|ref|YP_004597238.1| - 0.035 13.4 0.2 0.079 12.3 0.2 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding UreF PF01730.11 gi|336254131|ref|YP_004597238.1| - 0.063 13.3 1.2 13 5.8 0.1 2.8 3 0 0 3 3 3 0 UreF Sigma70_r4 PF04545.11 gi|336254131|ref|YP_004597238.1| - 0.087 12.1 4.0 0.21 10.9 0.0 3.2 4 0 0 4 4 4 0 Sigma-70, region 4 A2L_zn_ribbon PF08792.5 gi|336254131|ref|YP_004597238.1| - 0.14 11.6 1.4 0.34 10.4 1.0 1.7 1 1 0 1 1 1 0 A2L zinc ribbon domain zf-C4_Topoisom PF01396.14 gi|336254131|ref|YP_004597238.1| - 0.16 11.4 0.2 0.16 11.4 0.1 1.7 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Prok-RING_1 PF14446.1 gi|336254131|ref|YP_004597238.1| - 0.27 11.0 1.8 0.45 10.2 1.2 1.4 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zf-ribbon_3 PF13248.1 gi|336254131|ref|YP_004597238.1| - 0.28 10.4 2.7 0.6 9.4 1.8 1.5 1 1 0 1 1 1 0 zinc-ribbon domain zf-IS66 PF13005.2 gi|336254131|ref|YP_004597238.1| - 0.4 10.6 5.4 0.78 9.7 0.3 2.8 3 0 0 3 3 3 0 zinc-finger binding domain of transposase IS66 Zn-ribbon_8 PF09723.5 gi|336254131|ref|YP_004597238.1| - 0.6 10.1 6.5 1.5 8.8 0.9 2.4 1 1 1 2 2 2 0 Zinc ribbon domain YhfH PF14149.1 gi|336254131|ref|YP_004597238.1| - 0.67 9.8 3.4 1.4 8.8 2.4 1.5 1 0 0 1 1 1 0 YhfH-like protein ABC_tran_2 PF12848.2 gi|336254131|ref|YP_004597238.1| - 3.7 7.4 7.7 1.1 9.1 0.5 2.6 2 0 0 2 2 2 0 ABC transporter NMD3 PF04981.8 gi|336254132|ref|YP_004597239.1| - 0.00041 19.5 0.2 0.00045 19.4 0.1 1.0 1 0 0 1 1 1 1 NMD3 family PhnA_Zn_Ribbon PF08274.7 gi|336254132|ref|YP_004597239.1| - 0.0025 17.5 3.3 0.2 11.4 0.2 2.1 2 0 0 2 2 2 2 PhnA Zinc-Ribbon RNHCP PF12647.2 gi|336254132|ref|YP_004597239.1| - 0.0028 17.4 0.4 0.0035 17.1 0.3 1.2 1 0 0 1 1 1 1 RNHCP domain TF_Zn_Ribbon PF08271.7 gi|336254132|ref|YP_004597239.1| - 0.0049 16.1 1.3 0.25 10.7 0.1 2.1 2 0 0 2 2 2 1 TFIIB zinc-binding Zn_Tnp_IS1 PF03811.8 gi|336254132|ref|YP_004597239.1| - 0.012 15.1 1.3 2.3 7.7 0.0 2.1 2 0 0 2 2 2 0 InsA N-terminal domain UPF0547 PF10571.4 gi|336254132|ref|YP_004597239.1| - 0.012 15.2 3.2 1.9 8.2 0.0 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF2296 PF10058.4 gi|336254132|ref|YP_004597239.1| - 0.013 15.2 0.1 0.016 14.9 0.1 1.2 1 0 0 1 1 1 0 Predicted integral membrane metal-binding protein (DUF2296) zinc_ribbon_5 PF13719.1 gi|336254132|ref|YP_004597239.1| - 0.013 15.0 2.3 0.2 11.2 2.0 2.1 1 1 2 3 3 3 0 zinc-ribbon domain DZR PF12773.2 gi|336254132|ref|YP_004597239.1| - 0.015 15.1 2.3 0.052 13.3 1.6 1.6 1 1 1 2 2 2 0 Double zinc ribbon zinc_ribbon_4 PF13717.1 gi|336254132|ref|YP_004597239.1| - 0.017 14.8 2.9 0.33 10.6 2.4 2.1 1 1 2 3 3 3 0 zinc-ribbon domain Stc1 PF12898.2 gi|336254132|ref|YP_004597239.1| - 0.018 15.1 0.4 0.02 14.9 0.3 1.1 1 0 0 1 1 1 0 Stc1 domain zinc-ribbons_6 PF07191.7 gi|336254132|ref|YP_004597239.1| - 0.03 14.1 1.9 0.27 11.0 1.4 2.0 1 1 1 2 2 2 0 zinc-ribbons HypA PF01155.14 gi|336254132|ref|YP_004597239.1| - 0.034 13.8 0.3 0.036 13.7 0.2 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family TFIIS_C PF01096.13 gi|336254132|ref|YP_004597239.1| - 0.039 13.5 1.7 3 7.5 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-3CxxC PF13695.1 gi|336254132|ref|YP_004597239.1| - 0.052 13.7 0.1 1.9 8.7 0.0 2.1 2 0 0 2 2 2 0 Zinc-binding domain zf-RING_3 PF14369.1 gi|336254132|ref|YP_004597239.1| - 0.061 13.3 1.4 7.5 6.6 0.2 2.2 2 0 0 2 2 2 0 zinc-finger Zn-ribbon_8 PF09723.5 gi|336254132|ref|YP_004597239.1| - 0.075 13.0 0.6 5.4 7.0 0.0 2.2 2 0 0 2 2 2 0 Zinc ribbon domain Sgf11 PF08209.6 gi|336254132|ref|YP_004597239.1| - 0.087 12.1 0.6 0.95 8.8 0.1 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) CpXC PF14353.1 gi|336254132|ref|YP_004597239.1| - 0.11 12.4 2.3 0.76 9.7 0.1 2.0 1 1 0 2 2 2 0 CpXC protein zf-CHY PF05495.7 gi|336254132|ref|YP_004597239.1| - 0.13 12.4 2.3 0.72 10.0 0.2 2.0 1 1 1 2 2 2 0 CHY zinc finger zf-ribbon_3 PF13248.1 gi|336254132|ref|YP_004597239.1| - 0.13 11.5 2.2 1 8.6 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Rubredoxin PF00301.15 gi|336254132|ref|YP_004597239.1| - 0.34 10.8 5.3 0.42 10.5 1.1 2.1 1 1 1 2 2 2 0 Rubredoxin Zn_Tnp_IS1595 PF12760.2 gi|336254132|ref|YP_004597239.1| - 0.69 9.7 3.9 0.8 9.5 0.2 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-TFIIB PF13453.1 gi|336254132|ref|YP_004597239.1| - 1.1 8.4 5.0 3.7 6.8 0.5 2.0 1 1 1 2 2 2 0 Transcription factor zinc-finger DUF1610 PF07754.6 gi|336254132|ref|YP_004597239.1| - 8 6.6 7.0 7.2 6.8 0.6 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) UPF0058 PF01893.11 gi|336254133|ref|YP_004597240.1| - 2.8e-22 78.5 0.0 3e-22 78.4 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 DUF555 PF04475.7 gi|336254134|ref|YP_004597241.1| - 6.9e-38 128.7 0.1 9.1e-38 128.3 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF555) Cwf_Cwc_15 PF04889.7 gi|336254134|ref|YP_004597241.1| - 0.19 11.4 16.0 0.25 11.0 11.1 1.1 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein Striatin PF08232.7 gi|336254134|ref|YP_004597241.1| - 0.53 10.5 4.1 0.79 10.0 2.9 1.2 1 0 0 1 1 1 0 Striatin family DUF1510 PF07423.6 gi|336254134|ref|YP_004597241.1| - 1.8 7.9 9.8 2.2 7.6 6.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1510) Astro_capsid PF03115.9 gi|336254134|ref|YP_004597241.1| - 6.4 4.9 6.2 6.3 4.9 4.3 1.1 1 0 0 1 1 1 0 Astrovirus capsid protein precursor SDA1 PF05285.7 gi|336254134|ref|YP_004597241.1| - 9.5 5.3 19.4 12 5.0 13.5 1.2 1 0 0 1 1 1 0 SDA1 OGG_N PF07934.7 gi|336254135|ref|YP_004597242.1| - 1.3e-16 60.6 0.0 2e-16 60.0 0.0 1.3 1 0 0 1 1 1 1 8-oxoguanine DNA glycosylase, N-terminal domain HhH-GPD PF00730.20 gi|336254135|ref|YP_004597242.1| - 4.6e-15 55.8 0.0 1.1e-14 54.6 0.0 1.6 2 0 0 2 2 2 1 HhH-GPD superfamily base excision DNA repair protein AlkA_N PF06029.6 gi|336254135|ref|YP_004597242.1| - 0.023 14.7 0.1 0.069 13.2 0.0 1.8 2 0 0 2 2 2 0 AlkA N-terminal domain DUF3784 PF12650.2 gi|336254136|ref|YP_004597243.1| - 0.00086 19.2 0.1 0.0011 18.9 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF3784) RseC_MucC PF04246.7 gi|336254136|ref|YP_004597243.1| - 1.7 8.2 3.7 1.4 8.4 0.5 1.9 2 0 0 2 2 2 0 Positive regulator of sigma(E), RseC/MucC PrgI PF12666.2 gi|336254137|ref|YP_004597244.1| - 0.066 13.3 0.7 0.075 13.1 0.5 1.1 1 0 0 1 1 1 0 PrgI family protein DUF2976 PF11190.3 gi|336254137|ref|YP_004597244.1| - 0.081 12.4 3.4 0.33 10.5 0.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2976) Tetraspannin PF00335.15 gi|336254137|ref|YP_004597244.1| - 0.1 11.8 0.0 0.1 11.8 0.0 1.0 1 0 0 1 1 1 0 Tetraspanin family Acylphosphatase PF00708.13 gi|336254139|ref|YP_004597246.1| - 5.6e-27 93.6 0.1 6e-27 93.5 0.1 1.0 1 0 0 1 1 1 1 Acylphosphatase Carb_kinase PF01256.12 gi|336254141|ref|YP_004597248.1| - 4.5e-42 143.9 1.9 7.3e-42 143.3 1.3 1.3 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.10 gi|336254141|ref|YP_004597248.1| - 4.9e-41 140.1 0.5 9.3e-41 139.2 0.4 1.5 1 0 0 1 1 1 1 YjeF-related protein N-terminus HK PF02110.10 gi|336254141|ref|YP_004597248.1| - 2e-08 33.7 0.2 3.5e-08 32.9 0.2 1.5 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Phos_pyr_kin PF08543.7 gi|336254141|ref|YP_004597248.1| - 8.6e-08 31.6 0.1 2e-07 30.4 0.1 1.5 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase MoaC PF01967.16 gi|336254142|ref|YP_004597249.1| - 1e-45 154.7 0.4 1.2e-45 154.5 0.3 1.0 1 0 0 1 1 1 1 MoaC family NMO PF03060.10 gi|336254143|ref|YP_004597250.1| - 1.4e-77 261.1 5.1 2.2e-77 260.4 3.5 1.3 1 1 0 1 1 1 1 Nitronate monooxygenase FMN_dh PF01070.13 gi|336254143|ref|YP_004597250.1| - 2.3e-08 33.3 9.8 2.3e-08 33.3 6.8 1.6 2 0 0 2 2 2 1 FMN-dependent dehydrogenase IMPDH PF00478.20 gi|336254143|ref|YP_004597250.1| - 3e-07 29.6 3.3 1.3e-05 24.2 2.3 2.2 1 1 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain His_biosynth PF00977.16 gi|336254143|ref|YP_004597250.1| - 0.02 14.1 0.4 0.042 13.1 0.3 1.5 1 0 0 1 1 1 0 Histidine biosynthesis protein DHO_dh PF01180.16 gi|336254143|ref|YP_004597250.1| - 0.04 12.8 0.9 0.067 12.1 0.6 1.3 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase Glu_synthase PF01645.12 gi|336254143|ref|YP_004597250.1| - 0.18 10.7 3.0 0.3 9.9 2.1 1.4 1 1 0 1 1 1 0 Conserved region in glutamate synthase Lar_restr_allev PF14354.1 gi|336254144|ref|YP_004597251.1| - 2.5e-05 24.4 3.7 0.0024 18.1 0.1 2.7 2 0 0 2 2 2 2 Restriction alleviation protein Lar HTH_20 PF12840.2 gi|336254144|ref|YP_004597251.1| - 0.0048 16.6 0.0 0.011 15.5 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Elf1 PF05129.8 gi|336254144|ref|YP_004597251.1| - 0.011 15.4 0.1 3.6 7.3 0.1 2.4 2 0 0 2 2 2 0 Transcription elongation factor Elf1 like zf-C2HC5 PF06221.8 gi|336254144|ref|YP_004597251.1| - 0.19 11.5 1.4 1.5 8.6 0.0 2.8 3 0 0 3 3 3 0 Putative zinc finger motif, C2HC5-type DZR PF12773.2 gi|336254144|ref|YP_004597251.1| - 1.2 8.9 6.0 2.3 8.0 0.4 2.7 2 1 0 2 2 2 0 Double zinc ribbon DUF1272 PF06906.6 gi|336254144|ref|YP_004597251.1| - 5.8 6.8 7.9 2 8.3 0.1 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF1272) Proteasome PF00227.21 gi|336254145|ref|YP_004597252.1| - 4.5e-52 176.0 0.0 5.5e-52 175.8 0.0 1.1 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.4 gi|336254145|ref|YP_004597252.1| - 9.3e-13 47.2 0.1 1.5e-12 46.5 0.1 1.3 1 0 0 1 1 1 1 Proteasome subunit A N-terminal signature Proteasome PF00227.21 gi|336254146|ref|YP_004597253.1| - 8.3e-41 139.3 0.1 9.9e-41 139.1 0.1 1.1 1 0 0 1 1 1 1 Proteasome subunit DUF998 PF06197.8 gi|336254147|ref|YP_004597254.1| - 0.093 12.0 9.3 0.023 13.9 3.8 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF998) YvrJ PF12841.2 gi|336254147|ref|YP_004597254.1| - 0.11 11.8 0.3 0.26 10.6 0.2 1.6 1 0 0 1 1 1 0 YvrJ protein family FA_desaturase PF00487.19 gi|336254147|ref|YP_004597254.1| - 0.17 11.2 0.4 0.27 10.6 0.1 1.4 1 1 0 1 1 1 0 Fatty acid desaturase CopD PF05425.8 gi|336254147|ref|YP_004597254.1| - 0.21 11.7 4.8 0.38 10.9 3.3 1.4 1 0 0 1 1 1 0 Copper resistance protein D Bax1-I PF01027.15 gi|336254147|ref|YP_004597254.1| - 1.1 8.8 5.0 8.5 5.9 0.8 2.0 2 0 0 2 2 2 0 Inhibitor of apoptosis-promoting Bax1 DUF4282 PF14110.1 gi|336254147|ref|YP_004597254.1| - 5.6 7.2 7.7 12 6.1 1.3 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4282) adh_short PF00106.20 gi|336254148|ref|YP_004597255.1| - 2.3e-43 148.0 0.7 3.1e-43 147.5 0.5 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|336254148|ref|YP_004597255.1| - 1.2e-25 90.6 0.0 1.4e-25 90.4 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|336254148|ref|YP_004597255.1| - 1.2e-22 80.4 0.2 1.7e-22 79.9 0.1 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|336254148|ref|YP_004597255.1| - 0.011 15.2 0.1 0.018 14.4 0.1 1.5 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family ADH_zinc_N PF00107.21 gi|336254148|ref|YP_004597255.1| - 0.021 14.3 0.8 1.1 8.8 0.1 2.7 1 1 1 2 2 2 0 Zinc-binding dehydrogenase DUF1652 PF07865.6 gi|336254148|ref|YP_004597255.1| - 0.15 11.7 0.0 0.34 10.5 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1652) Abhydrolase_1 PF00561.15 gi|336254149|ref|YP_004597256.1| - 7.7e-18 64.8 0.0 1.4e-17 64.0 0.0 1.3 1 0 0 1 1 1 1 alpha/beta hydrolase fold PhaC_N PF07167.8 gi|336254149|ref|YP_004597256.1| - 1.8e-14 53.5 0.1 3e-14 52.8 0.1 1.3 1 0 0 1 1 1 1 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus HHH_5 PF14520.1 gi|336254149|ref|YP_004597256.1| - 1.8e-12 47.2 1.6 5.8e-12 45.6 1.0 2.0 2 0 0 2 2 2 1 Helix-hairpin-helix domain Abhydrolase_6 PF12697.2 gi|336254149|ref|YP_004597256.1| - 3e-12 46.9 0.0 8.5e-12 45.4 0.0 1.7 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|336254149|ref|YP_004597256.1| - 5.8e-10 39.0 0.0 1.4e-05 24.8 0.0 2.5 2 0 0 2 2 2 2 Alpha/beta hydrolase family DUF3141 PF11339.3 gi|336254149|ref|YP_004597256.1| - 6.9e-07 27.9 0.0 3.5e-06 25.6 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF3141) DLH PF01738.13 gi|336254149|ref|YP_004597256.1| - 3.7e-06 26.3 0.0 0.0019 17.5 0.0 3.2 2 1 1 3 3 3 1 Dienelactone hydrolase family DUF4332 PF14229.1 gi|336254149|ref|YP_004597256.1| - 9.8e-05 22.3 1.4 0.00075 19.4 0.4 2.4 2 1 0 2 2 2 1 Domain of unknown function (DUF4332) PHB_depo_C PF06850.6 gi|336254149|ref|YP_004597256.1| - 0.00012 21.3 0.1 0.00035 19.8 0.0 1.7 2 0 0 2 2 2 1 PHB de-polymerase C-terminus Cdd1 PF11731.3 gi|336254149|ref|YP_004597256.1| - 0.00049 19.9 0.0 0.0014 18.4 0.0 1.7 1 0 0 1 1 1 1 Pathogenicity locus DNA_pol_lambd_f PF10391.4 gi|336254149|ref|YP_004597256.1| - 0.0024 17.3 0.0 0.006 16.0 0.0 1.6 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda DUF2048 PF09752.4 gi|336254149|ref|YP_004597256.1| - 0.034 13.0 0.1 0.18 10.6 0.1 1.9 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2048) Homez PF11569.3 gi|336254149|ref|YP_004597256.1| - 0.056 12.5 0.4 1.1 8.3 0.0 2.4 2 0 0 2 2 2 0 Homeodomain leucine-zipper encoding, Homez FSH1 PF03959.8 gi|336254149|ref|YP_004597256.1| - 0.072 12.5 0.0 12 5.2 0.0 2.3 2 0 0 2 2 2 0 Serine hydrolase (FSH1) TfoX_C PF04994.8 gi|336254149|ref|YP_004597256.1| - 0.093 12.6 0.0 0.18 11.6 0.0 1.4 1 0 0 1 1 1 0 TfoX C-terminal domain PHA_synth_III_E PF09712.5 gi|336254150|ref|YP_004597257.1| - 6.4e-09 35.6 14.3 2.8e-08 33.5 1.9 2.7 1 1 0 2 2 2 1 Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E) Phasin PF05597.6 gi|336254150|ref|YP_004597257.1| - 0.0051 16.5 0.9 0.0051 16.5 0.6 2.3 1 1 1 2 2 2 1 Poly(hydroxyalcanoate) granule associated protein (phasin) 5_nucleotid_C PF02872.13 gi|336254150|ref|YP_004597257.1| - 0.035 14.0 0.3 0.097 12.6 0.0 1.7 1 1 1 2 2 2 0 5'-nucleotidase, C-terminal domain DUF3359 PF11839.3 gi|336254150|ref|YP_004597257.1| - 0.046 14.0 4.1 0.87 9.9 0.2 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF3359) DUF16 PF01519.11 gi|336254150|ref|YP_004597257.1| - 0.055 13.7 5.1 1.5 9.0 0.2 2.3 2 1 0 2 2 2 0 Protein of unknown function DUF16 RhoGEF PF00621.15 gi|336254150|ref|YP_004597257.1| - 0.069 13.0 0.1 0.12 12.2 0.0 1.4 1 1 0 1 1 1 0 RhoGEF domain FliD_C PF07195.7 gi|336254150|ref|YP_004597257.1| - 0.069 12.4 0.5 1.8 7.8 0.3 2.1 1 1 0 1 1 1 0 Flagellar hook-associated protein 2 C-terminus DUF445 PF04286.7 gi|336254150|ref|YP_004597257.1| - 0.09 12.2 6.4 0.81 9.1 4.4 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF445) COG2 PF06148.6 gi|336254150|ref|YP_004597257.1| - 0.091 12.6 3.7 7 6.5 0.1 2.7 1 1 2 3 3 3 0 COG (conserved oligomeric Golgi) complex component, COG2 Mating_N PF12731.2 gi|336254150|ref|YP_004597257.1| - 0.1 12.4 3.6 0.22 11.4 0.7 2.6 2 2 1 3 3 3 0 Mating-type protein beta 1 DUF4083 PF13314.1 gi|336254150|ref|YP_004597257.1| - 0.16 11.8 1.0 0.33 10.8 0.7 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4083) Ribosomal_L50 PF10501.4 gi|336254150|ref|YP_004597257.1| - 0.17 11.8 1.2 1.5 8.7 0.1 2.3 2 1 0 2 2 2 0 Ribosomal subunit 39S TMF_TATA_bd PF12325.3 gi|336254150|ref|YP_004597257.1| - 0.52 10.0 12.2 0.73 9.5 3.7 2.4 2 1 0 2 2 2 0 TATA element modulatory factor 1 TATA binding FliE PF02049.13 gi|336254150|ref|YP_004597257.1| - 2 8.5 6.9 0.59 10.2 0.3 2.9 1 1 2 3 3 3 0 Flagellar hook-basal body complex protein FliE Muted PF14942.1 gi|336254150|ref|YP_004597257.1| - 3 7.7 8.7 0.48 10.3 0.7 2.1 1 1 1 2 2 2 0 Organelle biogenesis, Muted-like protein DUF148 PF02520.12 gi|336254151|ref|YP_004597258.1| - 0.0053 16.5 2.5 1.6 8.5 1.8 2.3 1 1 1 2 2 2 2 Domain of unknown function DUF148 ADH_zinc_N_2 PF13602.1 gi|336254151|ref|YP_004597258.1| - 0.006 17.4 2.6 0.036 14.9 0.3 2.1 2 0 0 2 2 2 1 Zinc-binding dehydrogenase Phasin_2 PF09361.5 gi|336254151|ref|YP_004597258.1| - 0.012 15.5 15.5 2.6 8.1 0.1 3.3 2 2 1 3 3 3 0 Phasin protein DUF2884 PF11101.3 gi|336254151|ref|YP_004597258.1| - 0.02 14.2 4.6 0.041 13.2 3.2 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2884) Apolipoprotein PF01442.13 gi|336254151|ref|YP_004597258.1| - 0.059 12.8 3.1 0.12 11.9 2.2 1.6 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain IncA PF04156.9 gi|336254151|ref|YP_004597258.1| - 0.066 12.7 3.2 0.15 11.6 2.3 1.4 1 1 0 1 1 1 0 IncA protein Bacillus_PapR PF05968.6 gi|336254151|ref|YP_004597258.1| - 0.087 12.9 0.2 0.18 11.8 0.1 1.6 1 0 0 1 1 1 0 Bacillus PapR protein DUF2959 PF11172.3 gi|336254151|ref|YP_004597258.1| - 0.095 12.4 8.4 0.36 10.5 3.5 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2959) PMEI PF04043.10 gi|336254151|ref|YP_004597258.1| - 0.15 11.9 5.3 1.1 9.1 3.6 2.1 1 1 0 1 1 1 0 Plant invertase/pectin methylesterase inhibitor HAUS-augmin3 PF14932.1 gi|336254151|ref|YP_004597258.1| - 0.2 10.7 5.2 0.13 11.4 2.5 1.6 1 1 0 1 1 1 0 HAUS augmin-like complex subunit 3 Mog1 PF04603.7 gi|336254151|ref|YP_004597258.1| - 0.42 10.5 5.8 0.31 10.9 1.7 2.0 1 1 1 2 2 2 0 Ran-interacting Mog1 protein DASH_Dad2 PF08654.5 gi|336254151|ref|YP_004597258.1| - 0.44 10.5 2.7 0.22 11.5 0.4 1.6 2 0 0 2 2 2 0 DASH complex subunit Dad2 Phasin PF05597.6 gi|336254151|ref|YP_004597258.1| - 0.76 9.5 8.3 14 5.4 1.3 2.8 1 1 2 3 3 3 0 Poly(hydroxyalcanoate) granule associated protein (phasin) YtxH PF12732.2 gi|336254151|ref|YP_004597258.1| - 4.1 7.8 6.0 8.4 6.8 2.3 2.5 2 1 0 2 2 2 0 YtxH-like protein DUF883 PF05957.8 gi|336254151|ref|YP_004597258.1| - 8.9 6.7 7.7 16 5.9 2.9 2.7 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) Antitoxin-MazE PF04014.13 gi|336254152|ref|YP_004597259.1| - 0.0076 15.9 1.0 0.011 15.4 0.7 1.2 1 0 0 1 1 1 1 Antidote-toxin recognition MazE MaoC_dehydratas PF01575.14 gi|336254153|ref|YP_004597260.1| - 7.5e-25 86.6 0.1 1.6e-24 85.6 0.0 1.5 2 0 0 2 2 2 1 MaoC like domain MaoC_dehydrat_N PF13452.1 gi|336254153|ref|YP_004597260.1| - 1.1e-07 31.6 0.0 5.9e-07 29.3 0.0 2.2 1 1 1 2 2 2 1 N-terminal half of MaoC dehydratase 4HBT_2 PF13279.1 gi|336254153|ref|YP_004597260.1| - 3.4e-05 24.2 0.0 8e-05 23.0 0.0 1.5 1 1 0 1 1 1 1 Thioesterase-like superfamily 4HBT PF03061.17 gi|336254153|ref|YP_004597260.1| - 0.0014 18.7 0.1 0.014 15.4 0.0 2.5 3 1 0 3 3 3 1 Thioesterase superfamily PGM_PMM_I PF02878.11 gi|336254154|ref|YP_004597261.1| - 4.1e-32 110.5 0.1 1.8e-31 108.4 0.0 2.0 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|336254154|ref|YP_004597261.1| - 5.2e-18 65.2 0.1 1.4e-17 63.8 0.1 1.8 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.15 gi|336254154|ref|YP_004597261.1| - 2.4e-10 40.2 0.0 7e-10 38.7 0.0 1.8 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain PGM_PMM_III PF02880.11 gi|336254154|ref|YP_004597261.1| - 0.00041 20.3 0.2 0.0011 19.0 0.0 1.8 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Bmp PF02608.9 gi|336254155|ref|YP_004597262.1| - 4.1e-62 209.6 6.0 5.1e-62 209.3 4.2 1.0 1 0 0 1 1 1 1 Basic membrane protein Peripla_BP_4 PF13407.1 gi|336254155|ref|YP_004597262.1| - 3.2e-05 23.3 9.3 8.4e-05 22.0 6.5 1.7 1 1 0 1 1 1 1 Periplasmic binding protein domain TAT_signal PF10518.4 gi|336254155|ref|YP_004597262.1| - 0.0081 16.0 2.8 0.022 14.7 1.9 1.7 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence ABC_tran PF00005.22 gi|336254156|ref|YP_004597263.1| - 9.9e-48 161.9 0.0 1.1e-30 106.6 0.0 2.3 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|336254156|ref|YP_004597263.1| - 8.3e-12 45.6 0.0 5.6e-05 23.2 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|336254156|ref|YP_004597263.1| - 0.00025 20.5 0.0 0.0089 15.5 0.0 2.5 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|336254156|ref|YP_004597263.1| - 0.00039 19.6 0.0 0.17 10.8 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.1 gi|336254156|ref|YP_004597263.1| - 0.0051 16.9 0.4 0.071 13.2 0.3 2.3 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|336254156|ref|YP_004597263.1| - 0.011 14.9 0.2 3.5 6.8 0.0 2.7 3 0 0 3 3 3 0 RecF/RecN/SMC N terminal domain AAA_25 PF13481.1 gi|336254156|ref|YP_004597263.1| - 0.013 14.8 0.2 0.055 12.8 0.1 1.9 1 1 1 2 2 2 0 AAA domain DUF258 PF03193.11 gi|336254156|ref|YP_004597263.1| - 0.021 14.0 0.0 0.053 12.7 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|336254156|ref|YP_004597263.1| - 0.026 14.8 0.0 0.048 13.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|336254156|ref|YP_004597263.1| - 0.027 14.0 0.1 0.15 11.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.18 gi|336254156|ref|YP_004597263.1| - 0.11 12.4 0.0 0.78 9.7 0.0 2.5 2 1 0 2 2 2 0 50S ribosome-binding GTPase DLIC PF05783.6 gi|336254156|ref|YP_004597263.1| - 0.17 10.5 0.0 0.49 9.0 0.0 1.7 2 0 0 2 2 2 0 Dynein light intermediate chain (DLIC) IstB_IS21 PF01695.12 gi|336254156|ref|YP_004597263.1| - 0.2 11.0 0.2 1.8 7.9 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein BPD_transp_2 PF02653.11 gi|336254157|ref|YP_004597264.1| - 4.7e-48 163.4 30.6 4.7e-48 163.4 21.2 2.0 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.11 gi|336254158|ref|YP_004597265.1| - 2.9e-35 121.5 32.2 2.9e-35 121.5 22.3 1.5 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component DUF2480 PF10652.4 gi|336254158|ref|YP_004597265.1| - 0.085 12.4 0.0 0.15 11.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2480) dCMP_cyt_deam_1 PF00383.17 gi|336254159|ref|YP_004597266.1| - 1.7e-17 62.8 0.2 2.2e-17 62.5 0.2 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region dCMP_cyt_deam_2 PF08211.6 gi|336254159|ref|YP_004597266.1| - 7.2e-12 45.4 0.6 9.6e-12 44.9 0.4 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region HTH_10 PF04967.7 gi|336254159|ref|YP_004597266.1| - 0.052 13.1 0.0 0.11 12.1 0.0 1.6 1 0 0 1 1 1 0 HTH DNA binding domain YwqJ-deaminase PF14431.1 gi|336254159|ref|YP_004597266.1| - 0.12 12.2 0.5 4.7 7.0 0.6 2.2 1 1 1 2 2 2 0 YwqJ-like deaminase DUF488 PF04343.8 gi|336254160|ref|YP_004597267.1| - 1.4e-09 38.4 0.7 3.4e-09 37.1 0.5 1.8 1 1 0 1 1 1 1 Protein of unknown function, DUF488 PNP_UDP_1 PF01048.15 gi|336254161|ref|YP_004597268.1| - 2.9e-48 163.8 2.0 3.6e-48 163.5 1.4 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily MS_channel PF00924.13 gi|336254162|ref|YP_004597269.1| - 5e-17 61.9 0.8 5e-17 61.9 0.6 1.7 2 0 0 2 2 2 1 Mechanosensitive ion channel TM_helix PF05552.7 gi|336254162|ref|YP_004597269.1| - 2.7e-07 30.1 12.0 8.6e-07 28.5 0.0 3.2 3 0 0 3 3 3 2 Conserved TM helix DUF443 PF04276.7 gi|336254162|ref|YP_004597269.1| - 0.0041 16.5 5.5 0.0062 15.9 3.8 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF443) Fimbrial_PilY2 PF14481.1 gi|336254162|ref|YP_004597269.1| - 0.082 12.3 0.0 0.17 11.2 0.0 1.5 1 0 0 1 1 1 0 Type 4 fimbrial biogenesis protein PilY2 DisA_N PF02457.11 gi|336254163|ref|YP_004597270.1| - 2.4e-25 88.0 0.0 3.7e-25 87.4 0.0 1.3 1 0 0 1 1 1 1 DisA bacterial checkpoint controller nucleotide-binding PK_C PF02887.11 gi|336254163|ref|YP_004597270.1| - 0.029 13.9 0.0 0.46 10.0 0.0 2.7 1 1 1 2 2 2 0 Pyruvate kinase, alpha/beta domain Abhydrolase_6 PF12697.2 gi|336254164|ref|YP_004597271.1| - 3.1e-35 122.1 4.3 4.1e-35 121.6 3.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|336254164|ref|YP_004597271.1| - 2.3e-15 56.5 0.0 4.1e-15 55.7 0.0 1.4 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|336254164|ref|YP_004597271.1| - 3.1e-15 56.3 0.0 4.9e-12 45.9 0.0 2.3 1 1 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.3 gi|336254164|ref|YP_004597271.1| - 0.00024 20.9 0.1 0.00047 19.9 0.1 1.5 1 0 0 1 1 1 1 Putative lysophospholipase Abhydrolase_4 PF08386.5 gi|336254164|ref|YP_004597271.1| - 0.085 12.7 0.0 0.19 11.6 0.0 1.5 1 0 0 1 1 1 0 TAP-like protein Ndr PF03096.9 gi|336254164|ref|YP_004597271.1| - 0.17 10.2 0.0 6.1 5.2 0.0 2.0 2 0 0 2 2 2 0 Ndr family Xan_ur_permease PF00860.15 gi|336254165|ref|YP_004597272.1| - 3e-79 266.3 37.6 6.2e-79 265.2 26.1 1.5 1 1 0 1 1 1 1 Permease family VWA_2 PF13519.1 gi|336254166|ref|YP_004597273.1| - 1.8e-20 73.7 1.7 2.9e-20 73.0 1.1 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain Mg_chelatase PF01078.16 gi|336254166|ref|YP_004597273.1| - 6.5e-12 45.0 0.0 3.7e-09 36.0 0.0 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI VWA PF00092.23 gi|336254166|ref|YP_004597273.1| - 7.1e-12 45.4 0.0 1.2e-11 44.6 0.0 1.3 1 0 0 1 1 1 1 von Willebrand factor type A domain AAA_5 PF07728.9 gi|336254166|ref|YP_004597273.1| - 9.5e-08 31.8 0.0 4.8e-05 23.1 0.0 2.5 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) VWA_CoxE PF05762.9 gi|336254166|ref|YP_004597273.1| - 3.8e-07 29.4 6.9 6.8e-07 28.6 4.8 1.3 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein MCM PF00493.18 gi|336254166|ref|YP_004597273.1| - 4.1e-05 22.5 0.0 0.00021 20.2 0.0 2.1 2 1 0 2 2 2 1 MCM2/3/5 family VWA_3 PF13768.1 gi|336254166|ref|YP_004597273.1| - 0.00021 21.0 0.4 0.00038 20.1 0.3 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain Sigma54_activat PF00158.21 gi|336254166|ref|YP_004597273.1| - 0.014 14.8 0.0 0.24 10.8 0.0 2.1 2 0 0 2 2 2 0 Sigma-54 interaction domain Mg_chelatase_2 PF13335.1 gi|336254166|ref|YP_004597273.1| - 0.033 14.5 1.0 0.068 13.5 0.1 2.0 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_16 PF13191.1 gi|336254166|ref|YP_004597273.1| - 0.052 13.5 4.9 0.25 11.3 0.1 3.5 3 1 0 3 3 3 0 AAA ATPase domain AAA_22 PF13401.1 gi|336254166|ref|YP_004597273.1| - 0.082 13.0 0.0 30 4.7 0.0 3.3 4 0 0 4 4 4 0 AAA domain CobN-Mg_chel PF02514.11 gi|336254167|ref|YP_004597274.1| - 0 1223.7 0.1 0 1223.4 0.1 1.1 1 0 0 1 1 1 1 CobN/Magnesium Chelatase LexA_DNA_bind PF01726.11 gi|336254167|ref|YP_004597274.1| - 0.0047 16.4 0.0 0.013 14.9 0.0 1.7 1 0 0 1 1 1 1 LexA DNA binding domain CbiC PF02570.10 gi|336254168|ref|YP_004597275.1| - 5.6e-48 162.9 1.3 6.8e-48 162.7 0.9 1.1 1 0 0 1 1 1 1 Precorrin-8X methylmutase TP_methylase PF00590.15 gi|336254169|ref|YP_004597276.1| - 4e-37 127.9 0.4 4.6e-37 127.7 0.3 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Methyltransf_11 PF08241.7 gi|336254170|ref|YP_004597277.1| - 4.8e-25 87.8 0.0 7.4e-25 87.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|336254170|ref|YP_004597277.1| - 7.3e-24 84.0 0.0 9.3e-24 83.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|336254170|ref|YP_004597277.1| - 3.9e-22 78.7 0.0 5e-22 78.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|336254170|ref|YP_004597277.1| - 2.3e-20 73.2 0.1 1.1e-19 71.0 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|336254170|ref|YP_004597277.1| - 1.3e-18 66.9 0.0 2.1e-18 66.2 0.0 1.3 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.7 gi|336254170|ref|YP_004597277.1| - 6.8e-15 55.3 0.0 1.1e-14 54.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|336254170|ref|YP_004597277.1| - 5.5e-14 52.3 0.0 1.1e-13 51.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|336254170|ref|YP_004597277.1| - 8.1e-14 51.6 0.1 3.7e-13 49.5 0.1 1.9 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|336254170|ref|YP_004597277.1| - 1.5e-08 34.2 0.0 2.4e-08 33.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain TehB PF03848.9 gi|336254170|ref|YP_004597277.1| - 2.4e-06 26.8 0.0 3.3e-06 26.4 0.0 1.1 1 0 0 1 1 1 1 Tellurite resistance protein TehB MetW PF07021.7 gi|336254170|ref|YP_004597277.1| - 7.6e-05 22.1 0.0 0.0001 21.7 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_32 PF13679.1 gi|336254170|ref|YP_004597277.1| - 0.00012 21.8 0.0 0.00025 20.7 0.0 1.5 1 1 1 2 2 2 1 Methyltransferase domain TPMT PF05724.6 gi|336254170|ref|YP_004597277.1| - 0.00024 20.6 0.0 0.00057 19.3 0.0 1.6 2 0 0 2 2 2 1 Thiopurine S-methyltransferase (TPMT) DREV PF05219.7 gi|336254170|ref|YP_004597277.1| - 0.0004 19.3 0.0 0.0005 19.0 0.0 1.2 1 0 0 1 1 1 1 DREV methyltransferase AdoMet_MTase PF07757.8 gi|336254170|ref|YP_004597277.1| - 0.00088 19.3 0.0 0.0014 18.7 0.0 1.3 1 0 0 1 1 1 1 Predicted AdoMet-dependent methyltransferase PrmA PF06325.8 gi|336254170|ref|YP_004597277.1| - 0.0013 17.8 0.0 0.0018 17.4 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) PCMT PF01135.14 gi|336254170|ref|YP_004597277.1| - 0.0015 18.0 0.0 0.0026 17.3 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) NodS PF05401.6 gi|336254170|ref|YP_004597277.1| - 0.0025 17.2 0.0 0.0033 16.8 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) GidB PF02527.10 gi|336254170|ref|YP_004597277.1| - 0.0026 16.9 0.0 0.0059 15.7 0.0 1.5 1 1 0 1 1 1 1 rRNA small subunit methyltransferase G CMAS PF02353.15 gi|336254170|ref|YP_004597277.1| - 0.0028 16.7 0.0 0.0035 16.4 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase RrnaAD PF00398.15 gi|336254170|ref|YP_004597277.1| - 0.02 13.9 0.0 0.026 13.5 0.0 1.3 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase UPF0020 PF01170.13 gi|336254170|ref|YP_004597277.1| - 0.022 14.3 0.0 0.036 13.6 0.0 1.2 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 Methyltransf_29 PF03141.11 gi|336254170|ref|YP_004597277.1| - 0.029 12.7 0.0 0.12 10.7 0.0 1.8 1 1 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase FmrO PF07091.6 gi|336254170|ref|YP_004597277.1| - 0.03 13.3 0.0 0.043 12.7 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) 3HCDH_N PF02737.13 gi|336254170|ref|YP_004597277.1| - 0.13 11.8 0.0 0.19 11.3 0.0 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RuvA_C PF07499.8 gi|336254171|ref|YP_004597278.1| - 0.096 12.8 0.0 0.96 9.6 0.0 2.0 2 0 0 2 2 2 0 RuvA, C-terminal domain DUF1802 PF08819.6 gi|336254172|ref|YP_004597279.1| - 8.8e-30 103.6 0.0 1e-29 103.4 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1802) Frankia_peptide PF14407.1 gi|336254172|ref|YP_004597279.1| - 0.045 13.5 0.1 0.094 12.4 0.0 1.5 1 0 0 1 1 1 0 Ribosomally synthesized peptide prototyped by Frankia Franean1_4349. GATase_3 PF07685.9 gi|336254173|ref|YP_004597280.1| - 6.7e-31 107.0 0.2 1e-30 106.4 0.1 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|336254173|ref|YP_004597280.1| - 2.5e-20 72.7 0.0 5.1e-20 71.7 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|336254173|ref|YP_004597280.1| - 3.8e-11 42.9 0.1 8.5e-07 28.7 0.0 2.3 1 1 0 2 2 2 2 AAA domain CTP_synth_N PF06418.9 gi|336254173|ref|YP_004597280.1| - 0.00059 19.0 0.1 0.0011 18.1 0.0 1.3 1 0 0 1 1 1 1 CTP synthase N-terminus SNO PF01174.14 gi|336254173|ref|YP_004597280.1| - 0.0081 15.8 0.0 0.018 14.6 0.0 1.5 1 0 0 1 1 1 1 SNO glutamine amidotransferase family Methyltransf_18 PF12847.2 gi|336254174|ref|YP_004597281.1| - 2.9e-09 37.5 0.1 3.7e-09 37.1 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|336254174|ref|YP_004597281.1| - 0.00026 20.3 0.1 0.00065 19.1 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_11 PF08241.7 gi|336254174|ref|YP_004597281.1| - 0.0015 18.9 0.1 0.003 17.9 0.1 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|336254174|ref|YP_004597281.1| - 0.002 18.4 0.0 0.003 17.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|336254174|ref|YP_004597281.1| - 0.0051 15.8 0.1 0.0069 15.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_26 PF13659.1 gi|336254174|ref|YP_004597281.1| - 0.0053 16.7 0.3 0.0077 16.2 0.2 1.3 1 1 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|336254174|ref|YP_004597281.1| - 0.0063 16.0 0.0 0.011 15.2 0.0 1.3 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) DOT1 PF08123.8 gi|336254174|ref|YP_004597281.1| - 0.071 12.4 0.0 0.11 11.8 0.0 1.3 1 0 0 1 1 1 0 Histone methylation protein DOT1 GATase_3 PF07685.9 gi|336254174|ref|YP_004597281.1| - 0.085 12.4 0.0 0.18 11.4 0.0 1.5 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain CMAS PF02353.15 gi|336254174|ref|YP_004597281.1| - 0.09 11.8 0.0 0.14 11.2 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_16 PF10294.4 gi|336254174|ref|YP_004597281.1| - 0.13 11.7 0.0 0.18 11.2 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase TP_methylase PF00590.15 gi|336254175|ref|YP_004597282.1| - 1.3e-34 119.7 0.4 2.3e-34 118.9 0.3 1.4 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases TP_methylase PF00590.15 gi|336254176|ref|YP_004597283.1| - 9e-37 126.8 0.1 1.1e-36 126.4 0.1 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Radical_SAM PF04055.16 gi|336254176|ref|YP_004597283.1| - 0.0048 17.0 0.0 0.012 15.8 0.0 1.6 1 1 0 1 1 1 1 Radical SAM superfamily RraB PF06877.6 gi|336254176|ref|YP_004597283.1| - 0.0099 16.5 0.0 0.032 14.8 0.0 1.8 2 0 0 2 2 2 1 Regulator of ribonuclease activity B DUF4250 PF14056.1 gi|336254176|ref|YP_004597283.1| - 0.045 13.4 0.1 0.11 12.2 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4250) CbiA PF01656.18 gi|336254177|ref|YP_004597284.1| - 3.6e-16 59.1 0.0 6.3e-16 58.3 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_25 PF13481.1 gi|336254177|ref|YP_004597284.1| - 1.3e-09 37.7 1.8 0.0021 17.5 0.0 3.4 3 0 0 3 3 3 3 AAA domain AAA_26 PF13500.1 gi|336254177|ref|YP_004597284.1| - 1.8e-07 31.0 0.3 6.2e-05 22.6 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_31 PF13614.1 gi|336254177|ref|YP_004597284.1| - 9.1e-05 22.4 0.0 0.00027 20.9 0.0 1.8 1 1 0 1 1 1 1 AAA domain MipZ PF09140.6 gi|336254177|ref|YP_004597284.1| - 0.00035 19.7 0.0 0.00063 18.9 0.0 1.4 1 0 0 1 1 1 1 ATPase MipZ AP_endonuc_2 PF01261.19 gi|336254177|ref|YP_004597284.1| - 0.00059 19.1 0.0 0.076 12.2 0.0 2.6 2 1 0 2 2 2 1 Xylose isomerase-like TIM barrel ParA PF10609.4 gi|336254177|ref|YP_004597284.1| - 0.00086 19.1 0.0 0.0024 17.6 0.0 1.7 1 0 0 1 1 1 1 ParA/MinD ATPase like TPP_enzyme_M PF00205.17 gi|336254177|ref|YP_004597284.1| - 0.0084 15.8 0.0 0.023 14.4 0.0 1.7 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain Acetyltransf_6 PF13480.1 gi|336254177|ref|YP_004597284.1| - 0.088 12.7 1.4 0.15 12.0 0.4 1.8 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain 5TM-5TMR_LYT PF07694.7 gi|336254178|ref|YP_004597285.1| - 0.24 10.6 4.3 0.37 10.1 3.0 1.2 1 0 0 1 1 1 0 5TMR of 5TMR-LYT TrkA_C PF02080.16 gi|336254179|ref|YP_004597286.1| - 0.00092 18.7 0.0 0.0019 17.7 0.0 1.6 1 0 0 1 1 1 1 TrkA-C domain DUF2510 PF10708.4 gi|336254180|ref|YP_004597287.1| - 0.11 11.9 0.5 0.11 11.9 0.3 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2510) CbiA PF01656.18 gi|336254181|ref|YP_004597288.1| - 1.3e-19 70.3 0.0 1.8e-19 69.9 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|336254181|ref|YP_004597288.1| - 1e-08 35.3 0.0 1.5e-08 34.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain Fer4_NifH PF00142.13 gi|336254181|ref|YP_004597288.1| - 6.8e-06 25.4 0.0 0.042 13.0 0.0 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ParA PF10609.4 gi|336254181|ref|YP_004597288.1| - 0.00018 21.3 0.0 0.00033 20.4 0.0 1.5 1 0 0 1 1 1 1 ParA/MinD ATPase like AAA_33 PF13671.1 gi|336254181|ref|YP_004597288.1| - 0.0004 20.2 2.2 0.0086 15.9 1.5 2.4 1 1 0 1 1 1 1 AAA domain MipZ PF09140.6 gi|336254181|ref|YP_004597288.1| - 0.00077 18.6 0.2 0.25 10.3 0.0 2.2 2 0 0 2 2 2 2 ATPase MipZ AAA_17 PF13207.1 gi|336254181|ref|YP_004597288.1| - 0.0008 20.2 0.2 0.0095 16.7 0.0 2.5 1 1 1 2 2 2 1 AAA domain ArsA_ATPase PF02374.10 gi|336254181|ref|YP_004597288.1| - 0.077 12.0 0.2 0.22 10.5 0.4 1.6 2 0 0 2 2 2 0 Anion-transporting ATPase Aldo_ket_red PF00248.16 gi|336254182|ref|YP_004597289.1| - 3.7e-75 252.3 0.0 4.2e-75 252.1 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family Lipase_GDSL_2 PF13472.1 gi|336254182|ref|YP_004597289.1| - 0.024 14.7 0.0 2.7 8.0 0.0 2.7 2 1 1 3 3 3 0 GDSL-like Lipase/Acylhydrolase family TENA_THI-4 PF03070.11 gi|336254183|ref|YP_004597290.1| - 6.9e-50 169.7 1.4 7.8e-50 169.5 1.0 1.0 1 0 0 1 1 1 1 TENA/THI-4/PQQC family CBS PF00571.23 gi|336254185|ref|YP_004597292.1| - 2.5e-26 91.2 1.3 1.1e-12 47.5 0.0 2.2 2 0 0 2 2 2 2 CBS domain His_biosynth PF00977.16 gi|336254185|ref|YP_004597292.1| - 0.039 13.2 0.1 0.91 8.7 0.0 2.0 1 1 0 2 2 2 0 Histidine biosynthesis protein MFS_1 PF07690.11 gi|336254186|ref|YP_004597293.1| - 1.3e-22 80.0 59.9 2.5e-17 62.6 28.5 2.4 1 1 1 2 2 2 2 Major Facilitator Superfamily Molybdopterin PF00384.17 gi|336254187|ref|YP_004597294.1| - 3.7e-80 269.7 0.0 4.6e-80 269.4 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|336254187|ref|YP_004597294.1| - 8.9e-29 99.5 0.1 1.7e-28 98.5 0.1 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Fer2_4 PF13510.1 gi|336254187|ref|YP_004597294.1| - 7.4e-23 80.1 0.1 1.7e-22 79.0 0.1 1.6 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain NADH-G_4Fe-4S_3 PF10588.4 gi|336254187|ref|YP_004597294.1| - 3.6e-13 48.4 0.6 3.6e-13 48.4 0.4 2.2 2 0 0 2 2 1 1 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Molybdop_Fe4S4 PF04879.11 gi|336254187|ref|YP_004597294.1| - 8.5e-12 44.7 0.4 8.5e-12 44.7 0.3 2.2 2 0 0 2 2 1 1 Molybdopterin oxidoreductase Fe4S4 domain Fer4_6 PF12837.2 gi|336254187|ref|YP_004597294.1| - 1.8e-09 37.0 10.6 1.7e-06 27.6 0.8 3.5 4 0 0 4 4 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|336254187|ref|YP_004597294.1| - 5.3e-09 36.3 10.0 5.3e-09 36.3 6.9 3.9 4 0 0 4 4 4 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|336254187|ref|YP_004597294.1| - 2.5e-08 33.6 8.2 2.5e-08 33.6 5.7 3.3 5 0 0 5 5 4 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|336254187|ref|YP_004597294.1| - 4.2e-08 32.4 12.9 7.9e-07 28.4 1.0 3.7 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|336254187|ref|YP_004597294.1| - 4.3e-08 32.8 20.8 1e-07 31.6 7.5 3.5 3 2 1 4 4 4 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|336254187|ref|YP_004597294.1| - 1.3e-06 28.3 21.0 1.4e-06 28.1 6.0 3.4 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|336254187|ref|YP_004597294.1| - 5.2e-06 26.6 10.9 5.2e-06 26.6 7.6 3.9 2 1 2 4 4 4 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|336254187|ref|YP_004597294.1| - 0.00016 21.3 14.3 0.00084 19.1 2.0 4.9 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|336254187|ref|YP_004597294.1| - 0.00027 21.2 18.1 0.0015 18.9 1.1 3.2 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|336254187|ref|YP_004597294.1| - 0.0018 19.0 0.2 0.0018 19.0 0.2 4.2 5 0 0 5 5 3 2 4Fe-4S double cluster binding domain Fer4_13 PF13370.1 gi|336254187|ref|YP_004597294.1| - 0.012 15.9 12.4 0.58 10.5 2.0 3.2 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|336254187|ref|YP_004597294.1| - 0.024 15.2 2.4 0.024 15.2 1.6 3.9 3 1 1 4 4 2 0 4Fe-4S single cluster domain Complex1_51K PF01512.12 gi|336254188|ref|YP_004597295.1| - 2.4e-18 66.3 0.0 4.2e-18 65.5 0.0 1.4 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase 51 Kd subunit NADH_4Fe-4S PF10589.4 gi|336254188|ref|YP_004597295.1| - 5.1e-09 35.1 1.0 5.1e-09 35.1 0.7 2.6 2 0 0 2 2 2 1 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region FIST_C PF10442.4 gi|336254188|ref|YP_004597295.1| - 0.018 14.9 0.9 0.048 13.6 0.2 2.0 2 0 0 2 2 2 0 FIST C domain DUF2411 PF10304.4 gi|336254188|ref|YP_004597295.1| - 0.063 12.8 0.4 0.18 11.3 0.3 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF2411) ADH_N PF08240.7 gi|336254188|ref|YP_004597295.1| - 0.19 11.5 1.3 0.29 10.8 0.1 1.9 2 0 0 2 2 2 0 Alcohol dehydrogenase GroES-like domain PMSR PF01625.16 gi|336254189|ref|YP_004597296.1| - 6.3e-67 224.3 0.8 7.4e-67 224.0 0.6 1.0 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase RibD_C PF01872.12 gi|336254190|ref|YP_004597297.1| - 2.4e-55 187.2 0.2 2.7e-55 187.0 0.1 1.0 1 0 0 1 1 1 1 RibD C-terminal domain EamA PF00892.15 gi|336254192|ref|YP_004597299.1| - 8e-25 87.3 24.5 2.6e-13 50.0 6.9 2.5 2 1 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|336254192|ref|YP_004597299.1| - 5.1e-08 33.0 4.6 5.1e-08 33.0 3.2 3.4 3 1 1 4 4 4 2 Multidrug resistance efflux transporter NosL PF05573.7 gi|336254193|ref|YP_004597300.1| - 1.3e-13 50.8 0.0 1.8e-13 50.4 0.0 1.2 1 0 0 1 1 1 1 NosL TAT_signal PF10518.4 gi|336254193|ref|YP_004597300.1| - 0.34 11.0 4.2 0.6 10.2 2.9 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Polyketide_cyc PF03364.15 gi|336254194|ref|YP_004597301.1| - 2.4e-07 30.7 0.1 3.5e-07 30.2 0.0 1.3 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc2 PF10604.4 gi|336254194|ref|YP_004597301.1| - 6.4e-06 26.3 1.9 6.9e-06 26.2 1.3 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport PhoU PF01895.14 gi|336254195|ref|YP_004597302.1| - 6.2e-21 74.6 8.4 7.6e-16 58.3 1.0 2.4 2 0 0 2 2 2 2 PhoU domain Antitoxin-MazE PF04014.13 gi|336254195|ref|YP_004597302.1| - 1.4e-08 34.2 0.0 4.4e-08 32.6 0.0 1.9 1 0 0 1 1 1 1 Antidote-toxin recognition MazE RRN3 PF05327.6 gi|336254195|ref|YP_004597302.1| - 0.18 9.8 1.4 0.28 9.2 1.0 1.2 1 0 0 1 1 1 0 RNA polymerase I specific transcription initiation factor RRN3 CorA PF01544.13 gi|336254196|ref|YP_004597303.1| - 0.001 18.1 0.6 0.001 18.1 0.4 1.6 2 0 0 2 2 2 1 CorA-like Mg2+ transporter protein Spectrin PF00435.16 gi|336254196|ref|YP_004597303.1| - 0.0023 18.2 0.9 1.1 9.5 0.1 3.3 1 1 2 4 4 4 1 Spectrin repeat Reo_sigmaC PF04582.7 gi|336254196|ref|YP_004597303.1| - 0.0044 16.2 0.2 0.012 14.8 0.0 1.6 1 1 0 1 1 1 1 Reovirus sigma C capsid protein BLOC1_2 PF10046.4 gi|336254196|ref|YP_004597303.1| - 0.0066 16.5 0.1 0.25 11.4 0.0 2.5 2 0 0 2 2 2 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 Laminin_II PF06009.7 gi|336254196|ref|YP_004597303.1| - 0.0073 16.0 0.1 1.4 8.6 0.0 2.3 2 0 0 2 2 2 1 Laminin Domain II NPV_P10 PF05531.7 gi|336254196|ref|YP_004597303.1| - 0.037 14.2 0.2 11 6.3 0.4 3.8 2 1 0 2 2 2 0 Nucleopolyhedrovirus P10 protein CCDC155 PF14662.1 gi|336254196|ref|YP_004597303.1| - 0.038 13.5 0.2 0.82 9.2 0.0 2.5 2 1 0 2 2 2 0 Coiled-coil region of CCDC155 Snapin_Pallidin PF14712.1 gi|336254196|ref|YP_004597303.1| - 0.13 12.5 0.0 15 5.9 0.0 3.0 2 1 1 3 3 3 0 Snapin/Pallidin Exonuc_VII_S PF02609.11 gi|336254196|ref|YP_004597303.1| - 0.23 11.2 1.3 4.9 7.0 0.7 3.2 2 0 0 2 2 2 0 Exonuclease VII small subunit GTPase_Cys_C PF12631.2 gi|336254196|ref|YP_004597303.1| - 0.84 10.0 7.9 4 7.9 0.4 3.6 3 2 1 4 4 4 0 Catalytic cysteine-containing C-terminus of GTPase, MnmE Myosin_tail_1 PF01576.14 gi|336254196|ref|YP_004597303.1| - 1.1 6.8 7.7 0.32 8.6 1.3 1.9 1 1 0 2 2 2 0 Myosin tail PhoU PF01895.14 gi|336254197|ref|YP_004597304.1| - 8e-37 125.5 9.7 3.5e-21 75.4 0.5 2.1 2 0 0 2 2 2 2 PhoU domain HSCB_C PF07743.8 gi|336254197|ref|YP_004597304.1| - 1.5 9.3 5.5 0.63 10.5 0.4 2.3 2 0 0 2 2 2 0 HSCB C-terminal oligomerisation domain DUF2580 PF10824.3 gi|336254197|ref|YP_004597304.1| - 1.7 9.0 9.3 3.2 8.1 1.0 2.7 2 1 0 2 2 2 0 Protein of unknown function (DUF2580) FCD PF07729.7 gi|336254197|ref|YP_004597304.1| - 1.9 8.8 13.4 4.1 7.7 0.9 3.3 2 1 2 4 4 4 0 FCD domain ABC_tran PF00005.22 gi|336254198|ref|YP_004597305.1| - 1.3e-31 109.7 0.0 2.1e-31 109.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|336254198|ref|YP_004597305.1| - 3.5e-14 53.4 0.0 2.9e-07 30.7 0.0 2.2 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|336254198|ref|YP_004597305.1| - 2.5e-08 33.4 0.1 1.6e-06 27.5 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|336254198|ref|YP_004597305.1| - 3e-05 23.2 0.0 0.065 12.2 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.1 gi|336254198|ref|YP_004597305.1| - 4.9e-05 23.4 0.0 0.00021 21.4 0.0 2.0 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|336254198|ref|YP_004597305.1| - 0.00021 20.5 0.0 0.00039 19.6 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|336254198|ref|YP_004597305.1| - 0.00022 20.6 0.0 0.00056 19.3 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|336254198|ref|YP_004597305.1| - 0.00032 20.7 0.2 0.0067 16.4 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.1 gi|336254198|ref|YP_004597305.1| - 0.0018 18.6 0.0 0.0038 17.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|336254198|ref|YP_004597305.1| - 0.0069 15.8 0.0 0.012 15.0 0.0 1.5 1 1 0 1 1 1 1 AAA-like domain DeoRC PF00455.17 gi|336254198|ref|YP_004597305.1| - 0.0069 16.0 0.0 0.011 15.3 0.0 1.3 1 0 0 1 1 1 1 DeoR C terminal sensor domain Rad17 PF03215.10 gi|336254198|ref|YP_004597305.1| - 0.012 14.3 0.0 0.016 13.9 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_25 PF13481.1 gi|336254198|ref|YP_004597305.1| - 0.012 15.0 0.0 0.046 13.1 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|336254198|ref|YP_004597305.1| - 0.012 15.4 0.1 0.04 13.7 0.0 1.8 2 1 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|336254198|ref|YP_004597305.1| - 0.023 14.4 0.0 2.9 7.6 0.0 2.5 2 0 0 2 2 2 0 Part of AAA domain AAA_17 PF13207.1 gi|336254198|ref|YP_004597305.1| - 0.024 15.4 0.2 0.086 13.6 0.1 2.2 1 1 0 1 1 1 0 AAA domain Adeno_IVa2 PF02456.10 gi|336254198|ref|YP_004597305.1| - 0.032 12.8 0.0 0.61 8.6 0.0 2.1 2 0 0 2 2 2 0 Adenovirus IVa2 protein ABC_ATPase PF09818.4 gi|336254198|ref|YP_004597305.1| - 0.12 10.9 0.0 4.8 5.6 0.0 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class BPD_transp_1 PF00528.17 gi|336254199|ref|YP_004597306.1| - 3.3e-19 69.1 15.3 3.3e-19 69.1 10.6 4.8 1 1 2 3 3 3 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|336254200|ref|YP_004597307.1| - 1.3e-17 63.9 11.6 1.3e-17 63.9 8.1 2.7 1 1 3 4 4 4 1 Binding-protein-dependent transport system inner membrane component DUF2048 PF09752.4 gi|336254200|ref|YP_004597307.1| - 0.0026 16.6 0.3 0.0042 16.0 0.2 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2048) YlaC PF10777.4 gi|336254200|ref|YP_004597307.1| - 0.37 10.3 1.3 1 8.9 0.0 2.2 3 0 0 3 3 3 0 Inner membrane protein YlaC Abhydrolase_6 PF12697.2 gi|336254200|ref|YP_004597307.1| - 0.38 10.5 3.1 0.81 9.5 2.2 2.0 1 1 0 1 1 1 0 Alpha/beta hydrolase family PBP_like_2 PF12849.2 gi|336254201|ref|YP_004597308.1| - 6.1e-33 114.4 2.4 1.1e-32 113.6 1.6 1.4 1 1 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.2 gi|336254201|ref|YP_004597308.1| - 2.9e-12 45.9 0.1 4.3e-12 45.3 0.1 1.2 1 0 0 1 1 1 1 PBP superfamily domain TAT_signal PF10518.4 gi|336254201|ref|YP_004597308.1| - 9.6 6.5 7.0 0.8 9.8 1.7 1.7 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence Metallophos_2 PF12850.2 gi|336254202|ref|YP_004597309.1| - 4.6e-13 49.2 0.0 8.7e-13 48.3 0.0 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|336254202|ref|YP_004597309.1| - 6.4e-10 38.7 1.6 2.2e-09 37.0 1.1 1.9 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase zf-Di19 PF05605.7 gi|336254203|ref|YP_004597310.1| - 0.039 14.0 0.1 0.057 13.5 0.1 1.2 1 0 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding zf-C2H2_4 PF13894.1 gi|336254203|ref|YP_004597310.1| - 0.053 13.8 0.8 0.099 13.0 0.3 1.7 2 0 0 2 2 2 0 C2H2-type zinc finger zf-C2H2 PF00096.21 gi|336254203|ref|YP_004597310.1| - 0.075 13.4 0.9 0.22 11.9 0.3 1.9 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-C2H2_2 PF12756.2 gi|336254203|ref|YP_004597310.1| - 0.084 12.9 0.1 0.1 12.6 0.0 1.1 1 0 0 1 1 1 0 C2H2 type zinc-finger (2 copies) YlqD PF11068.3 gi|336254204|ref|YP_004597311.1| - 0.013 15.5 5.0 0.013 15.5 3.4 2.9 2 1 1 3 3 3 0 YlqD protein LuxC PF05893.9 gi|336254204|ref|YP_004597311.1| - 0.021 13.5 0.4 0.03 13.0 0.3 1.1 1 0 0 1 1 1 0 Acyl-CoA reductase (LuxC) Hox9_act PF04617.8 gi|336254204|ref|YP_004597311.1| - 0.022 14.9 0.0 0.036 14.2 0.0 1.3 1 0 0 1 1 1 0 Hox9 activation region TBPIP PF07106.8 gi|336254204|ref|YP_004597311.1| - 0.13 11.8 2.5 0.12 11.8 0.7 1.7 2 0 0 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Laminin_II PF06009.7 gi|336254204|ref|YP_004597311.1| - 0.13 12.0 1.9 0.27 11.0 1.3 1.5 1 0 0 1 1 1 0 Laminin Domain II YkyA PF10368.4 gi|336254204|ref|YP_004597311.1| - 0.43 9.8 2.6 0.51 9.6 1.1 1.7 2 0 0 2 2 2 0 Putative cell-wall binding lipoprotein Baculo_PEP_C PF04513.7 gi|336254204|ref|YP_004597311.1| - 0.85 9.4 3.8 4.9 6.9 0.2 2.6 2 1 1 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF4407 PF14362.1 gi|336254204|ref|YP_004597311.1| - 1.3 7.9 9.7 2.3 7.1 2.8 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4407) Nup54 PF13874.1 gi|336254204|ref|YP_004597311.1| - 6.4 6.4 10.6 0.27 10.8 2.8 2.0 2 1 0 2 2 2 0 Nucleoporin complex subunit 54 HTH_24 PF13412.1 gi|336254206|ref|YP_004597313.1| - 5.1e-14 51.3 0.0 9.1e-14 50.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.16 gi|336254206|ref|YP_004597313.1| - 1.4e-11 43.8 0.0 2.3e-11 43.2 0.0 1.3 1 0 0 1 1 1 1 AsnC family HTH_AsnC-type PF13404.1 gi|336254206|ref|YP_004597313.1| - 2.1e-09 36.7 0.0 3.8e-09 35.9 0.0 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_IclR PF09339.5 gi|336254206|ref|YP_004597313.1| - 3.3e-08 32.9 0.0 6.3e-08 32.0 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.7 gi|336254206|ref|YP_004597313.1| - 5.9e-08 32.2 0.0 2.3e-07 30.3 0.0 2.1 1 1 0 1 1 1 1 HTH domain HTH_36 PF13730.1 gi|336254206|ref|YP_004597313.1| - 1.4e-07 31.4 0.0 3.6e-07 30.1 0.0 1.6 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_DeoR PF08220.7 gi|336254206|ref|YP_004597313.1| - 8.8e-07 28.3 0.0 1.9e-06 27.2 0.0 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain Fe_dep_repress PF01325.14 gi|336254206|ref|YP_004597313.1| - 2.1e-06 27.5 0.1 5.2e-06 26.2 0.0 1.7 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain LacI PF00356.16 gi|336254206|ref|YP_004597313.1| - 5.7e-06 25.8 0.0 5.3e-05 22.7 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family HTH_23 PF13384.1 gi|336254206|ref|YP_004597313.1| - 7.5e-06 25.4 0.0 1.5e-05 24.4 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain MarR_2 PF12802.2 gi|336254206|ref|YP_004597313.1| - 7.7e-06 25.4 0.0 0.00015 21.3 0.0 2.3 3 0 0 3 3 2 1 MarR family HTH_20 PF12840.2 gi|336254206|ref|YP_004597313.1| - 8.1e-06 25.5 0.0 1.7e-05 24.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain FaeA PF04703.7 gi|336254206|ref|YP_004597313.1| - 1.1e-05 25.5 0.0 1.7e-05 24.8 0.0 1.3 1 0 0 1 1 1 1 FaeA-like protein HTH_5 PF01022.15 gi|336254206|ref|YP_004597313.1| - 1.1e-05 25.0 0.0 2.4e-05 23.9 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_28 PF13518.1 gi|336254206|ref|YP_004597313.1| - 1.3e-05 25.0 0.0 2.6e-05 24.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|336254206|ref|YP_004597313.1| - 1.4e-05 24.6 0.0 3.2e-05 23.5 0.0 1.6 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|336254206|ref|YP_004597313.1| - 5.5e-05 22.7 0.0 9.6e-05 22.0 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.15 gi|336254206|ref|YP_004597313.1| - 0.00013 21.9 0.1 0.00064 19.7 0.0 2.0 1 1 1 2 2 2 1 Transcriptional regulator GntR PF00392.16 gi|336254206|ref|YP_004597313.1| - 0.0004 19.7 0.1 0.001 18.4 0.0 1.7 2 0 0 2 2 1 1 Bacterial regulatory proteins, gntR family HTH_29 PF13551.1 gi|336254206|ref|YP_004597313.1| - 0.00076 19.6 0.0 0.0015 18.6 0.0 1.6 1 1 1 2 2 2 1 Winged helix-turn helix TFIIE_alpha PF02002.12 gi|336254206|ref|YP_004597313.1| - 0.00082 18.8 0.0 0.0013 18.2 0.0 1.4 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_Tnp_ISL3 PF13542.1 gi|336254206|ref|YP_004597313.1| - 0.0011 18.1 0.0 0.002 17.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_10 PF04967.7 gi|336254206|ref|YP_004597313.1| - 0.0016 17.9 0.0 0.004 16.7 0.0 1.7 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4_2 PF08281.7 gi|336254206|ref|YP_004597313.1| - 0.0026 17.1 0.0 0.0053 16.1 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_Crp_2 PF13545.1 gi|336254206|ref|YP_004597313.1| - 0.0028 17.4 0.0 0.0064 16.2 0.0 1.7 1 1 1 2 2 2 1 Crp-like helix-turn-helix domain TetR_N PF00440.18 gi|336254206|ref|YP_004597313.1| - 0.0034 16.9 0.1 0.0066 16.0 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family HTH_27 PF13463.1 gi|336254206|ref|YP_004597313.1| - 0.0056 16.9 0.0 0.014 15.7 0.0 1.7 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_Mga PF08280.6 gi|336254206|ref|YP_004597313.1| - 0.0067 16.1 0.0 0.015 15.0 0.0 1.6 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_6 PF01418.12 gi|336254206|ref|YP_004597313.1| - 0.011 15.4 0.0 0.022 14.4 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family HTH_45 PF14947.1 gi|336254206|ref|YP_004597313.1| - 0.012 15.3 0.0 0.038 13.7 0.0 1.7 1 1 1 2 2 2 0 Winged helix-turn-helix HTH_3 PF01381.17 gi|336254206|ref|YP_004597313.1| - 0.014 15.2 0.0 0.032 14.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix EAP30 PF04157.11 gi|336254206|ref|YP_004597313.1| - 0.018 14.2 0.1 0.047 12.8 0.0 1.7 2 0 0 2 2 2 0 EAP30/Vps36 family HTH_1 PF00126.22 gi|336254206|ref|YP_004597313.1| - 0.021 14.5 0.0 0.04 13.6 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_Tnp_1 PF01527.15 gi|336254206|ref|YP_004597313.1| - 0.026 14.4 0.0 0.034 14.0 0.0 1.3 1 0 0 1 1 1 0 Transposase FeoC PF09012.5 gi|336254206|ref|YP_004597313.1| - 0.03 14.0 0.0 0.055 13.1 0.0 1.4 1 0 0 1 1 1 0 FeoC like transcriptional regulator HTH_17 PF12728.2 gi|336254206|ref|YP_004597313.1| - 0.044 14.0 0.0 0.069 13.4 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain DUF4110 PF13422.1 gi|336254206|ref|YP_004597313.1| - 0.046 13.5 0.0 0.14 12.0 0.0 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4110) HTH_31 PF13560.1 gi|336254206|ref|YP_004597313.1| - 0.067 13.3 0.0 0.13 12.5 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain GHMP_kinases_C PF08544.8 gi|336254206|ref|YP_004597313.1| - 0.087 13.0 0.0 3.8 7.7 0.0 2.5 2 1 1 3 3 3 0 GHMP kinases C terminal MerR PF00376.18 gi|336254206|ref|YP_004597313.1| - 0.099 12.2 0.0 0.22 11.1 0.0 1.6 1 0 0 1 1 1 0 MerR family regulatory protein HTH_34 PF13601.1 gi|336254206|ref|YP_004597313.1| - 0.1 12.6 0.0 0.22 11.5 0.0 1.7 1 1 0 1 1 1 0 Winged helix DNA-binding domain DUF2250 PF10007.4 gi|336254206|ref|YP_004597313.1| - 0.11 12.3 0.0 0.19 11.6 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_30 PF13556.1 gi|336254206|ref|YP_004597313.1| - 0.12 11.9 0.0 0.24 11.0 0.0 1.5 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain HTH_38 PF13936.1 gi|336254206|ref|YP_004597313.1| - 0.14 11.7 0.0 0.38 10.3 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain TctB PF07331.6 gi|336254207|ref|YP_004597314.1| - 0.034 13.8 4.8 0.092 12.3 3.3 1.8 1 1 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family Yip1 PF04893.12 gi|336254207|ref|YP_004597314.1| - 0.094 12.2 5.2 0.21 11.0 3.6 1.5 1 1 0 1 1 1 0 Yip1 domain Arif-1 PF06770.6 gi|336254207|ref|YP_004597314.1| - 0.11 11.8 0.2 0.13 11.5 0.2 1.0 1 0 0 1 1 1 0 Actin-rearrangement-inducing factor (Arif-1) Colicin_V PF02674.11 gi|336254207|ref|YP_004597314.1| - 0.59 9.9 4.4 3.8 7.3 3.2 1.9 1 1 1 2 2 2 0 Colicin V production protein SdpI PF13630.1 gi|336254207|ref|YP_004597314.1| - 3.3 7.4 5.4 1.9 8.2 1.4 2.0 1 1 1 2 2 2 0 SdpI/YhfL protein family DZR PF12773.2 gi|336254208|ref|YP_004597315.1| - 2.5e-12 46.4 15.8 7.3e-12 44.9 7.4 2.5 2 1 0 2 2 2 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|336254208|ref|YP_004597315.1| - 1.6e-11 43.0 22.8 1.3e-06 27.4 3.8 3.1 3 0 0 3 3 3 2 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|336254208|ref|YP_004597315.1| - 2.8e-10 39.3 19.8 6.7e-07 28.5 1.9 3.2 3 0 0 3 3 3 2 zinc-ribbon domain UPF0547 PF10571.4 gi|336254208|ref|YP_004597315.1| - 0.00013 21.5 4.0 0.00013 21.5 2.8 3.6 4 0 0 4 4 3 1 Uncharacterised protein family UPF0547 UbiA PF01040.13 gi|336254208|ref|YP_004597315.1| - 0.0076 15.5 0.3 0.011 15.0 0.2 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family RseC_MucC PF04246.7 gi|336254208|ref|YP_004597315.1| - 0.0099 15.4 0.8 0.0099 15.4 0.6 2.0 2 0 0 2 2 2 1 Positive regulator of sigma(E), RseC/MucC Nudix_N_2 PF14803.1 gi|336254208|ref|YP_004597315.1| - 0.013 15.1 16.2 2.2 8.0 0.1 5.5 5 0 0 5 5 5 0 Nudix N-terminal PHF5 PF03660.9 gi|336254208|ref|YP_004597315.1| - 0.021 14.8 10.6 0.43 10.6 2.0 2.7 2 1 0 2 2 2 0 PHF5-like protein NinG PF05766.7 gi|336254208|ref|YP_004597315.1| - 0.032 13.9 0.0 0.11 12.2 0.0 1.9 2 0 0 2 2 2 0 Bacteriophage Lambda NinG protein DUF35_N PF12172.3 gi|336254208|ref|YP_004597315.1| - 0.3 11.0 18.0 0.13 12.2 2.1 3.1 3 0 0 3 3 3 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Prok-RING_1 PF14446.1 gi|336254208|ref|YP_004597315.1| - 0.33 10.7 15.5 0.39 10.4 0.7 3.6 4 0 0 4 4 4 0 Prokaryotic RING finger family 1 C1_1 PF00130.17 gi|336254208|ref|YP_004597315.1| - 2.5 7.9 10.5 6.1 6.6 1.5 3.6 2 2 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DUF2116 PF09889.4 gi|336254208|ref|YP_004597315.1| - 2.8 7.8 13.6 2.7 7.8 1.1 3.3 3 0 0 3 3 3 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) DUF1272 PF06906.6 gi|336254208|ref|YP_004597315.1| - 9 6.2 12.5 5.5 6.9 5.8 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1272) TPP_enzyme_C PF02775.16 gi|336254209|ref|YP_004597316.1| - 1e-31 109.5 0.1 1.5e-31 108.9 0.0 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.3 gi|336254209|ref|YP_004597316.1| - 0.027 14.3 0.1 0.081 12.8 0.1 1.9 1 0 0 1 1 1 0 Pyruvate ferredoxin oxidoreductase beta subunit C terminal DUF2487 PF10673.4 gi|336254209|ref|YP_004597316.1| - 0.12 12.2 0.0 0.18 11.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2487) POR_N PF01855.14 gi|336254210|ref|YP_004597317.1| - 7.2e-51 172.9 0.0 1.4e-50 171.9 0.0 1.5 1 1 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.13 gi|336254210|ref|YP_004597317.1| - 1.1e-47 162.1 0.0 2.6e-47 160.9 0.0 1.6 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_N PF02776.13 gi|336254210|ref|YP_004597317.1| - 0.00028 20.4 0.1 0.00058 19.3 0.0 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Transketolase_C PF02780.15 gi|336254210|ref|YP_004597317.1| - 0.0069 16.3 0.0 0.024 14.5 0.0 1.9 2 0 0 2 2 2 1 Transketolase, C-terminal domain OsmC PF02566.14 gi|336254211|ref|YP_004597318.1| - 2.5e-17 62.8 0.0 4e-17 62.2 0.0 1.3 1 0 0 1 1 1 1 OsmC-like protein Biotin_lipoyl PF00364.17 gi|336254211|ref|YP_004597318.1| - 1.9e-07 30.6 0.0 4.3e-07 29.4 0.0 1.6 2 0 0 2 2 2 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.1 gi|336254211|ref|YP_004597318.1| - 0.0062 16.1 0.0 0.02 14.5 0.0 1.8 2 0 0 2 2 2 1 Biotin-lipoyl like HlyD_3 PF13437.1 gi|336254211|ref|YP_004597318.1| - 0.017 15.4 0.2 0.71 10.2 0.0 2.6 2 1 1 3 3 3 0 HlyD family secretion protein PHP PF02811.14 gi|336254212|ref|YP_004597319.1| - 2.6e-07 30.6 0.0 5.3e-07 29.5 0.0 1.6 1 1 0 1 1 1 1 PHP domain PHP_C PF13263.1 gi|336254212|ref|YP_004597319.1| - 0.0024 17.3 0.0 0.045 13.2 0.0 2.5 2 0 0 2 2 2 1 PHP-associated SpoU_methylase PF00588.14 gi|336254212|ref|YP_004597319.1| - 0.096 12.5 0.0 0.34 10.7 0.0 1.8 2 0 0 2 2 2 0 SpoU rRNA Methylase family Chorismate_synt PF01264.16 gi|336254213|ref|YP_004597320.1| - 8.2e-128 425.7 0.0 9.5e-128 425.5 0.0 1.0 1 0 0 1 1 1 1 Chorismate synthase HIT PF01230.18 gi|336254214|ref|YP_004597321.1| - 3.8e-18 65.8 0.0 4.6e-18 65.5 0.0 1.1 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.3 gi|336254214|ref|YP_004597321.1| - 1.2e-08 35.1 0.0 1.6e-08 34.7 0.0 1.1 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.10 gi|336254214|ref|YP_004597321.1| - 0.0005 19.7 0.0 0.00064 19.3 0.0 1.2 1 0 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 Phosphodiest PF01663.17 gi|336254215|ref|YP_004597322.1| - 5.8e-31 108.1 0.5 3.5e-29 102.2 0.4 2.0 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.18 gi|336254215|ref|YP_004597322.1| - 0.0001 21.5 0.3 0.37 9.9 0.0 2.2 2 0 0 2 2 2 2 Sulfatase PglZ PF08665.7 gi|336254215|ref|YP_004597322.1| - 0.00017 21.3 0.1 0.022 14.4 0.0 2.2 2 0 0 2 2 2 2 PglZ domain Alk_phosphatase PF00245.15 gi|336254215|ref|YP_004597322.1| - 0.0012 17.6 0.5 0.0019 16.9 0.4 1.2 1 0 0 1 1 1 1 Alkaline phosphatase 2_5_RNA_ligase2 PF13563.1 gi|336254215|ref|YP_004597322.1| - 0.059 13.0 0.4 0.11 12.2 0.3 1.4 1 0 0 1 1 1 0 2'-5' RNA ligase superfamily Metalloenzyme PF01676.13 gi|336254215|ref|YP_004597322.1| - 0.2 10.9 0.6 0.35 10.2 0.2 1.5 2 0 0 2 2 2 0 Metalloenzyme superfamily EPSP_synthase PF00275.15 gi|336254216|ref|YP_004597323.1| - 4.1e-108 361.4 0.0 5.1e-108 361.1 0.0 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Cu_amine_oxidN1 PF07833.6 gi|336254216|ref|YP_004597323.1| - 0.053 13.8 0.1 0.22 11.9 0.0 2.1 1 1 0 1 1 1 0 Copper amine oxidase N-terminal domain DUF389 PF04087.9 gi|336254217|ref|YP_004597324.1| - 6.1e-33 113.6 22.6 6.1e-33 113.6 15.7 2.1 3 0 0 3 3 3 1 Domain of unknown function (DUF389) Propep_M14 PF02244.11 gi|336254217|ref|YP_004597324.1| - 0.083 12.5 0.0 0.17 11.5 0.0 1.5 1 0 0 1 1 1 0 Carboxypeptidase activation peptide Peptidase_M24 PF00557.19 gi|336254219|ref|YP_004597326.1| - 2e-45 154.9 0.6 2.7e-45 154.5 0.4 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|336254219|ref|YP_004597326.1| - 2.5e-08 34.4 0.0 6.5e-08 33.1 0.0 1.7 1 1 0 1 1 1 1 Creatinase/Prolidase N-terminal domain Trypsin_2 PF13365.1 gi|336254220|ref|YP_004597327.1| - 3.7e-17 62.4 0.8 7.1e-17 61.5 0.6 1.5 1 0 0 1 1 1 1 Trypsin-like peptidase domain PDZ_2 PF13180.1 gi|336254220|ref|YP_004597327.1| - 9.7e-15 54.2 0.1 2.4e-14 52.9 0.1 1.7 1 0 0 1 1 1 1 PDZ domain Trypsin PF00089.21 gi|336254220|ref|YP_004597327.1| - 1.6e-12 47.4 0.4 6.2e-12 45.5 0.2 1.8 1 1 0 1 1 1 1 Trypsin TAT_signal PF10518.4 gi|336254220|ref|YP_004597327.1| - 0.026 14.5 2.2 0.026 14.5 1.5 2.0 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence NAD_binding_8 PF13450.1 gi|336254221|ref|YP_004597328.1| - 1.1e-14 54.2 0.1 3.5e-14 52.5 0.1 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Amino_oxidase PF01593.19 gi|336254221|ref|YP_004597328.1| - 7.7e-10 38.4 2.5 0.00022 20.4 0.1 2.1 1 1 1 2 2 2 2 Flavin containing amine oxidoreductase DAO PF01266.19 gi|336254221|ref|YP_004597328.1| - 1.4e-06 27.4 6.0 2.4e-05 23.4 0.2 2.9 1 1 0 2 2 2 2 FAD dependent oxidoreductase DUF2285 PF10074.4 gi|336254221|ref|YP_004597328.1| - 0.046 14.0 1.1 7.9 6.8 0.0 2.5 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2285) Pyr_redox_3 PF13738.1 gi|336254221|ref|YP_004597328.1| - 0.15 12.1 0.9 1.4 8.9 0.6 2.1 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.9 gi|336254221|ref|YP_004597328.1| - 0.19 10.2 0.9 0.33 9.5 0.6 1.3 1 0 0 1 1 1 0 Tryptophan halogenase Pyr_redox_2 PF07992.9 gi|336254221|ref|YP_004597328.1| - 0.22 11.3 2.4 0.27 11.0 0.8 1.7 2 1 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|336254221|ref|YP_004597328.1| - 0.57 8.9 11.5 0.44 9.3 1.6 2.9 3 1 0 4 4 4 0 FAD binding domain HTH_20 PF12840.2 gi|336254222|ref|YP_004597329.1| - 0.045 13.5 1.5 0.69 9.7 0.1 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_24 PF13412.1 gi|336254223|ref|YP_004597330.1| - 2.4e-13 49.2 0.1 4.1e-13 48.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|336254223|ref|YP_004597330.1| - 4.7e-12 45.2 1.4 1.3e-11 43.8 1.0 1.8 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.7 gi|336254223|ref|YP_004597330.1| - 7.7e-09 35.0 0.1 2.3e-08 33.5 0.0 1.8 2 0 0 2 2 2 1 HTH domain HTH_20 PF12840.2 gi|336254223|ref|YP_004597330.1| - 2.2e-06 27.3 0.3 1e-05 25.2 0.0 2.2 2 1 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|336254223|ref|YP_004597330.1| - 2.7e-06 26.9 0.0 6.3e-06 25.7 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_DeoR PF08220.7 gi|336254223|ref|YP_004597330.1| - 1.1e-05 24.8 2.5 0.00016 21.1 0.1 2.6 3 0 0 3 3 3 1 DeoR-like helix-turn-helix domain Fe_dep_repress PF01325.14 gi|336254223|ref|YP_004597330.1| - 3.9e-05 23.4 0.0 7.8e-05 22.5 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_23 PF13384.1 gi|336254223|ref|YP_004597330.1| - 0.00024 20.6 0.0 0.0014 18.2 0.0 2.1 2 0 0 2 2 2 1 Homeodomain-like domain HTH_30 PF13556.1 gi|336254223|ref|YP_004597330.1| - 0.00054 19.4 0.1 0.0012 18.3 0.0 1.6 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain HTH_IclR PF09339.5 gi|336254223|ref|YP_004597330.1| - 0.0012 18.3 0.1 0.0031 17.0 0.0 1.7 2 0 0 2 2 1 1 IclR helix-turn-helix domain MarR PF01047.17 gi|336254223|ref|YP_004597330.1| - 0.0013 18.4 0.0 0.0032 17.1 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_38 PF13936.1 gi|336254223|ref|YP_004597330.1| - 0.0015 18.0 0.1 0.0041 16.6 0.0 1.9 2 0 0 2 2 1 1 Helix-turn-helix domain EAP30 PF04157.11 gi|336254223|ref|YP_004597330.1| - 0.0015 17.6 0.2 0.059 12.5 0.0 2.0 2 0 0 2 2 2 1 EAP30/Vps36 family HTH_28 PF13518.1 gi|336254223|ref|YP_004597330.1| - 0.0023 17.8 0.0 0.0052 16.7 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|336254223|ref|YP_004597330.1| - 0.0035 16.9 0.0 0.012 15.2 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family Sigma70_r4_2 PF08281.7 gi|336254223|ref|YP_004597330.1| - 0.0043 16.4 0.1 0.012 15.0 0.0 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_10 PF04967.7 gi|336254223|ref|YP_004597330.1| - 0.0049 16.4 0.1 0.011 15.2 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain AsnC_trans_reg PF01037.16 gi|336254223|ref|YP_004597330.1| - 0.0057 16.3 0.2 0.01 15.5 0.1 1.4 1 0 0 1 1 1 1 AsnC family HTH_8 PF02954.14 gi|336254223|ref|YP_004597330.1| - 0.011 15.2 0.0 0.031 13.7 0.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family HTH_1 PF00126.22 gi|336254223|ref|YP_004597330.1| - 0.015 15.0 0.0 0.037 13.7 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family GntR PF00392.16 gi|336254223|ref|YP_004597330.1| - 0.015 14.6 1.2 0.038 13.4 0.1 2.1 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_29 PF13551.1 gi|336254223|ref|YP_004597330.1| - 0.023 14.8 0.0 0.057 13.5 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn helix Sigma70_r3 PF04539.11 gi|336254223|ref|YP_004597330.1| - 0.027 14.3 0.2 0.12 12.3 0.0 2.0 2 0 0 2 2 2 0 Sigma-70 region 3 TrmB PF01978.14 gi|336254223|ref|YP_004597330.1| - 0.031 13.9 0.0 0.076 12.7 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_Mga PF08280.6 gi|336254223|ref|YP_004597330.1| - 0.033 13.9 0.0 0.091 12.5 0.0 1.7 2 0 0 2 2 1 0 M protein trans-acting positive regulator (MGA) HTH domain Rrf2 PF02082.15 gi|336254223|ref|YP_004597330.1| - 0.038 14.1 0.0 0.098 12.7 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator HTH_17 PF12728.2 gi|336254223|ref|YP_004597330.1| - 0.048 13.9 0.1 0.16 12.2 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain MerR PF00376.18 gi|336254223|ref|YP_004597330.1| - 0.053 13.0 0.0 0.12 11.9 0.0 1.6 1 0 0 1 1 1 0 MerR family regulatory protein LexA_DNA_bind PF01726.11 gi|336254223|ref|YP_004597330.1| - 0.066 12.7 0.1 0.31 10.6 0.0 2.0 2 0 0 2 2 2 0 LexA DNA binding domain PaaX PF07848.7 gi|336254223|ref|YP_004597330.1| - 0.075 13.0 0.0 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 PaaX-like protein HTH_27 PF13463.1 gi|336254223|ref|YP_004597330.1| - 0.081 13.2 0.4 0.27 11.6 0.0 2.0 3 0 0 3 3 2 0 Winged helix DNA-binding domain GerE PF00196.14 gi|336254223|ref|YP_004597330.1| - 0.09 12.1 0.0 0.19 11.0 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_3 PF01381.17 gi|336254223|ref|YP_004597330.1| - 0.098 12.5 0.0 0.21 11.4 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix DUF4423 PF14394.1 gi|336254223|ref|YP_004597330.1| - 0.11 12.0 0.1 0.39 10.2 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4423) Acetyltransf_1 PF00583.19 gi|336254224|ref|YP_004597331.1| - 9.6e-14 51.1 0.2 2.2e-13 50.0 0.0 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.1 gi|336254224|ref|YP_004597331.1| - 1.1e-13 51.3 0.0 2.1e-13 50.5 0.0 1.4 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|336254224|ref|YP_004597331.1| - 2.7e-08 33.9 0.0 5.3e-08 32.9 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|336254224|ref|YP_004597331.1| - 2.7e-06 27.4 0.0 4.4e-06 26.7 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|336254224|ref|YP_004597331.1| - 1.7e-05 25.0 0.0 2.6e-05 24.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|336254224|ref|YP_004597331.1| - 4.3e-05 23.3 0.1 0.00079 19.2 0.1 2.4 1 1 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.1 gi|336254224|ref|YP_004597331.1| - 0.0017 18.2 0.1 0.005 16.6 0.1 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|336254224|ref|YP_004597331.1| - 0.0042 16.9 0.0 0.0069 16.2 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|336254224|ref|YP_004597331.1| - 0.017 15.0 0.6 0.046 13.6 0.4 1.7 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain DUF3749 PF12568.3 gi|336254224|ref|YP_004597331.1| - 0.18 11.4 1.4 0.52 9.9 0.8 2.0 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain PDH PF02153.12 gi|336254225|ref|YP_004597332.1| - 7.4e-11 41.4 1.4 3.3e-09 36.0 1.0 2.1 1 1 0 1 1 1 1 Prephenate dehydrogenase F420_oxidored PF03807.12 gi|336254225|ref|YP_004597332.1| - 9.4e-05 22.7 4.9 0.0006 20.1 0.3 2.8 3 0 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA PF01408.17 gi|336254225|ref|YP_004597332.1| - 0.0036 17.8 0.8 0.0036 17.8 0.5 2.2 2 1 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold 3HCDH_N PF02737.13 gi|336254225|ref|YP_004597332.1| - 3.5 7.2 7.3 1.7 8.2 1.0 2.8 2 2 1 3 3 3 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Methyltransf_26 PF13659.1 gi|336254225|ref|YP_004597332.1| - 6.9 6.7 7.7 15 5.6 5.3 1.9 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_12 PF08242.7 gi|336254226|ref|YP_004597333.1| - 3.7e-11 43.3 0.0 8.7e-11 42.1 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|336254226|ref|YP_004597333.1| - 5.5e-11 42.4 0.0 1.3e-10 41.2 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|336254226|ref|YP_004597333.1| - 2e-06 28.3 0.1 5.3e-06 26.9 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Rsm22 PF09243.5 gi|336254226|ref|YP_004597333.1| - 5.3e-05 22.3 0.0 8.8e-05 21.6 0.0 1.2 1 0 0 1 1 1 1 Mitochondrial small ribosomal subunit Rsm22 Methyltransf_11 PF08241.7 gi|336254226|ref|YP_004597333.1| - 5.8e-05 23.5 0.0 0.00017 22.0 0.0 1.9 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|336254226|ref|YP_004597333.1| - 0.0036 17.3 0.5 0.0091 16.0 0.3 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|336254226|ref|YP_004597333.1| - 0.0063 16.1 0.0 0.045 13.3 0.0 2.2 1 1 0 1 1 1 1 Methyltransferase domain PBP_like_2 PF12849.2 gi|336254227|ref|YP_004597334.1| - 3e-12 46.5 0.4 2.7e-11 43.4 0.3 2.0 1 1 0 1 1 1 1 PBP superfamily domain SurE PF01975.12 gi|336254228|ref|YP_004597335.1| - 3.3e-49 166.8 0.0 4.3e-49 166.5 0.0 1.1 1 0 0 1 1 1 1 Survival protein SurE Rdx PF10262.4 gi|336254229|ref|YP_004597336.1| - 5.5e-18 64.7 0.0 6.2e-18 64.5 0.0 1.0 1 0 0 1 1 1 1 Rdx family EAP30 PF04157.11 gi|336254230|ref|YP_004597337.1| - 0.0064 15.6 0.1 0.0094 15.1 0.0 1.3 1 1 0 1 1 1 1 EAP30/Vps36 family HTH_24 PF13412.1 gi|336254230|ref|YP_004597337.1| - 0.0089 15.4 0.1 0.024 14.0 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding DUF1328 PF07043.8 gi|336254231|ref|YP_004597338.1| - 3.3e-12 46.1 20.9 3.8e-12 45.9 14.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1328) Bacteriocin_IId PF09221.5 gi|336254231|ref|YP_004597338.1| - 0.2 11.6 4.3 0.25 11.2 3.0 1.1 1 0 0 1 1 1 0 Bacteriocin class IId cyclical uberolysin-like DUF2178 PF09946.4 gi|336254231|ref|YP_004597338.1| - 1.7 8.4 5.7 1.9 8.2 4.0 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2178) DUF3733 PF12534.3 gi|336254231|ref|YP_004597338.1| - 3.3 7.0 4.7 7.5 5.9 0.1 2.1 2 0 0 2 2 2 0 Leucine-rich repeat containing protein 8 Silic_transp PF03842.8 gi|336254231|ref|YP_004597338.1| - 6.2 4.7 7.4 6.4 4.7 5.2 1.0 1 0 0 1 1 1 0 Silicon transporter Spore_YhcN_YlaJ PF09580.5 gi|336254232|ref|YP_004597339.1| - 0.15 12.1 7.3 0.19 11.8 5.0 1.2 1 0 0 1 1 1 0 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) CENP-T PF15511.1 gi|336254232|ref|YP_004597339.1| - 0.82 8.8 19.7 0.79 8.8 13.7 1.0 1 0 0 1 1 1 0 Centromere kinetochore component CENP-T DHHW PF14286.1 gi|336254232|ref|YP_004597339.1| - 2.1 7.5 8.0 2.5 7.3 5.6 1.1 1 0 0 1 1 1 0 DHHW protein RR_TM4-6 PF06459.7 gi|336254232|ref|YP_004597339.1| - 6.2 6.6 13.1 7.7 6.3 9.1 1.2 1 0 0 1 1 1 0 Ryanodine Receptor TM 4-6 TAT_signal PF10518.4 gi|336254233|ref|YP_004597340.1| - 0.0009 19.0 0.2 0.0018 18.1 0.1 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.4 gi|336254233|ref|YP_004597340.1| - 0.0037 16.4 0.4 0.0072 15.4 0.3 1.5 1 0 0 1 1 1 1 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal PQQ_3 PF13570.1 gi|336254233|ref|YP_004597340.1| - 0.024 14.9 0.0 0.061 13.6 0.0 1.7 1 0 0 1 1 1 0 PQQ-like domain Ribosomal_S15 PF00312.17 gi|336254234|ref|YP_004597341.1| - 7e-24 83.3 0.4 1e-23 82.8 0.3 1.2 1 0 0 1 1 1 1 Ribosomal protein S15 Ribosomal_S13_N PF08069.7 gi|336254234|ref|YP_004597341.1| - 6.7e-22 77.0 0.0 1.3e-21 76.1 0.0 1.5 1 0 0 1 1 1 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S3Ae PF01015.13 gi|336254237|ref|YP_004597344.1| - 1.4e-69 233.3 0.4 1.6e-69 233.1 0.3 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family LTXXQ PF07813.7 gi|336254237|ref|YP_004597344.1| - 0.58 10.6 4.3 15 6.1 0.1 2.7 3 0 0 3 3 3 0 LTXXQ motif family protein Acetyltransf_7 PF13508.1 gi|336254238|ref|YP_004597345.1| - 3e-06 27.2 0.0 4e-06 26.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|336254238|ref|YP_004597345.1| - 2.3e-05 24.3 0.0 3.5e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|336254238|ref|YP_004597345.1| - 6e-05 23.1 0.0 7.2e-05 22.8 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Transglut_core3 PF13471.1 gi|336254238|ref|YP_004597345.1| - 0.16 11.8 0.2 0.32 10.7 0.1 1.6 1 1 0 1 1 1 0 Transglutaminase-like superfamily TruD PF01142.13 gi|336254239|ref|YP_004597346.1| - 6.5e-89 298.2 0.0 1.3e-88 297.2 0.0 1.4 1 1 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) PTH2 PF01981.11 gi|336254240|ref|YP_004597347.1| - 9.4e-41 138.1 0.1 1e-40 138.0 0.1 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 TP_methylase PF00590.15 gi|336254240|ref|YP_004597347.1| - 0.11 12.2 0.1 0.12 12.0 0.1 1.1 1 0 0 1 1 1 0 Tetrapyrrole (Corrin/Porphyrin) Methylases DCD PF06559.6 gi|336254242|ref|YP_004597349.1| - 3.7e-15 55.1 0.0 7.6e-14 50.8 0.0 2.0 1 1 0 1 1 1 1 2'-deoxycytidine 5'-triphosphate deaminase (DCD) dUTPase PF00692.14 gi|336254242|ref|YP_004597349.1| - 7.3e-15 54.5 0.0 1.2e-14 53.8 0.0 1.3 1 0 0 1 1 1 1 dUTPase DUF389 PF04087.9 gi|336254243|ref|YP_004597350.1| - 2.4 8.1 10.8 2.3 8.1 5.8 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF389) Aldolase_2 PF10120.4 gi|336254244|ref|YP_004597351.1| - 3.3e-47 160.0 0.0 4.8e-47 159.4 0.0 1.2 1 0 0 1 1 1 1 Putative aldolase HTH_3 PF01381.17 gi|336254244|ref|YP_004597351.1| - 1e-07 31.6 0.0 2.3e-07 30.5 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_37 PF13744.1 gi|336254244|ref|YP_004597351.1| - 4e-05 23.3 0.0 9e-05 22.2 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|336254244|ref|YP_004597351.1| - 0.00011 21.4 0.1 0.00028 20.1 0.1 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_24 PF13412.1 gi|336254244|ref|YP_004597351.1| - 0.00015 21.0 0.0 0.00051 19.3 0.0 1.9 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_19 PF12844.2 gi|336254244|ref|YP_004597351.1| - 0.0002 21.3 0.0 0.00038 20.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|336254244|ref|YP_004597351.1| - 0.00022 21.3 0.5 0.00022 21.3 0.3 2.4 2 1 0 2 2 2 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|336254244|ref|YP_004597351.1| - 0.00045 19.6 0.1 0.0011 18.3 0.1 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.1 gi|336254244|ref|YP_004597351.1| - 0.00056 19.4 0.0 0.0024 17.4 0.0 2.0 2 0 0 2 2 2 1 Homeodomain-like domain MarR_2 PF12802.2 gi|336254244|ref|YP_004597351.1| - 0.00062 19.3 0.3 0.0032 17.0 0.0 2.4 2 0 0 2 2 2 1 MarR family HTH_38 PF13936.1 gi|336254244|ref|YP_004597351.1| - 0.0038 16.7 0.0 0.0083 15.6 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|336254244|ref|YP_004597351.1| - 0.009 16.1 0.0 0.018 15.2 0.0 1.5 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_5 PF01022.15 gi|336254244|ref|YP_004597351.1| - 0.01 15.5 0.3 0.036 13.7 0.0 2.1 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family KorB PF08535.5 gi|336254244|ref|YP_004597351.1| - 0.019 15.0 0.1 0.21 11.7 0.0 2.4 1 1 0 1 1 1 0 KorB domain DUF2481 PF10654.4 gi|336254244|ref|YP_004597351.1| - 0.037 13.7 0.0 0.055 13.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2481) F420_ligase PF01996.11 gi|336254244|ref|YP_004597351.1| - 0.041 12.9 0.0 0.066 12.2 0.0 1.4 1 0 0 1 1 1 0 F420-0:Gamma-glutamyl ligase HTH_IclR PF09339.5 gi|336254244|ref|YP_004597351.1| - 0.041 13.4 0.6 0.51 9.9 0.0 2.7 2 0 0 2 2 2 0 IclR helix-turn-helix domain P22_Cro PF14549.1 gi|336254244|ref|YP_004597351.1| - 0.043 13.5 0.1 0.11 12.1 0.0 1.7 1 0 0 1 1 1 0 DNA-binding transcriptional regulator Cro HTH_17 PF12728.2 gi|336254244|ref|YP_004597351.1| - 0.044 14.0 0.0 0.1 12.8 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_28 PF13518.1 gi|336254244|ref|YP_004597351.1| - 0.11 12.4 0.3 0.57 10.2 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_7 PF02796.10 gi|336254244|ref|YP_004597351.1| - 0.12 12.2 0.0 0.29 11.0 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase Methyltransf_23 PF13489.1 gi|336254245|ref|YP_004597352.1| - 3.8e-11 42.9 0.0 4.9e-11 42.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|336254245|ref|YP_004597352.1| - 9e-11 42.1 0.0 3.3e-08 33.9 0.0 2.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|336254245|ref|YP_004597352.1| - 9.3e-09 35.0 0.0 1.6e-08 34.3 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|336254245|ref|YP_004597352.1| - 1.2e-08 35.5 0.1 2.1e-08 34.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|336254245|ref|YP_004597352.1| - 1.5e-07 31.8 0.0 2.8e-07 30.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|336254245|ref|YP_004597352.1| - 1.6e-05 24.5 0.0 2.4e-05 23.9 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_25 PF13649.1 gi|336254245|ref|YP_004597352.1| - 3.6e-05 24.0 0.0 6.2e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|336254245|ref|YP_004597352.1| - 0.00016 21.6 2.1 0.0015 18.5 1.5 2.5 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|336254245|ref|YP_004597352.1| - 0.0013 17.8 0.0 0.002 17.3 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family FtsJ PF01728.14 gi|336254245|ref|YP_004597352.1| - 0.0025 17.8 0.0 0.0032 17.4 0.0 1.3 1 0 0 1 1 1 1 FtsJ-like methyltransferase RrnaAD PF00398.15 gi|336254245|ref|YP_004597352.1| - 0.013 14.5 0.0 0.018 14.0 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase GCD14 PF08704.5 gi|336254245|ref|YP_004597352.1| - 0.062 12.7 0.0 0.094 12.2 0.0 1.2 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit Methyltransf_4 PF02390.12 gi|336254245|ref|YP_004597352.1| - 0.076 12.0 0.0 0.11 11.5 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase Fibrillarin PF01269.12 gi|336254245|ref|YP_004597352.1| - 0.14 11.0 0.0 0.22 10.4 0.0 1.2 1 0 0 1 1 1 0 Fibrillarin 4HBT_2 PF13279.1 gi|336254246|ref|YP_004597353.1| - 3.5e-16 59.7 0.1 4.6e-16 59.3 0.0 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily Acyl-ACP_TE PF01643.12 gi|336254246|ref|YP_004597353.1| - 8.7e-14 51.0 0.1 1.8e-06 27.0 0.0 2.0 1 1 1 2 2 2 2 Acyl-ACP thioesterase 4HBT PF03061.17 gi|336254246|ref|YP_004597353.1| - 9.3e-14 51.3 0.1 1.4e-13 50.7 0.0 1.3 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_3 PF13622.1 gi|336254246|ref|YP_004597353.1| - 2.4e-05 24.2 0.0 2.6e-05 24.1 0.0 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily Acetyltransf_9 PF13527.1 gi|336254246|ref|YP_004597353.1| - 0.097 12.5 0.0 0.15 11.9 0.0 1.3 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Abhydrolase_6 PF12697.2 gi|336254247|ref|YP_004597354.1| - 3.7e-39 134.9 0.3 4.3e-39 134.7 0.2 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|336254247|ref|YP_004597354.1| - 1.3e-30 106.6 0.0 2.7e-30 105.6 0.0 1.5 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|336254247|ref|YP_004597354.1| - 1.1e-22 80.3 0.1 8.2e-21 74.2 0.0 2.1 1 1 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.3 gi|336254247|ref|YP_004597354.1| - 2.3e-05 24.1 0.1 7.5e-05 22.5 0.2 1.9 2 0 0 2 2 2 1 Putative lysophospholipase Peptidase_S15 PF02129.13 gi|336254247|ref|YP_004597354.1| - 0.009 15.4 0.1 0.057 12.8 0.0 2.0 1 1 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_4 PF08386.5 gi|336254247|ref|YP_004597354.1| - 0.0095 15.8 0.0 0.021 14.7 0.0 1.5 1 1 0 1 1 1 1 TAP-like protein Abhydrolase_2 PF02230.11 gi|336254247|ref|YP_004597354.1| - 0.014 14.8 0.1 0.17 11.3 0.0 2.3 3 0 0 3 3 3 0 Phospholipase/Carboxylesterase DLH PF01738.13 gi|336254247|ref|YP_004597354.1| - 0.023 13.9 0.0 0.66 9.2 0.0 2.2 2 0 0 2 2 2 0 Dienelactone hydrolase family FSH1 PF03959.8 gi|336254247|ref|YP_004597354.1| - 0.05 13.0 0.0 2 7.8 0.0 2.7 2 1 0 2 2 2 0 Serine hydrolase (FSH1) DUF1057 PF06342.7 gi|336254247|ref|YP_004597354.1| - 0.081 11.7 0.0 0.11 11.2 0.0 1.1 1 0 0 1 1 1 0 Alpha/beta hydrolase of unknown function (DUF1057) LIP PF03583.9 gi|336254247|ref|YP_004597354.1| - 0.12 11.5 0.0 0.28 10.3 0.0 1.6 2 0 0 2 2 2 0 Secretory lipase Copper-bind PF00127.15 gi|336254249|ref|YP_004597356.1| - 9.8e-10 38.5 0.0 2.4e-09 37.2 0.0 1.7 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.1 gi|336254249|ref|YP_004597356.1| - 0.06 13.2 0.1 0.31 10.9 0.1 2.0 1 1 0 1 1 1 0 Cupredoxin-like domain AAA PF00004.24 gi|336254250|ref|YP_004597357.1| - 5e-80 266.1 0.0 4.1e-39 133.7 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|336254250|ref|YP_004597357.1| - 9.4e-11 42.5 5.0 0.00025 21.8 0.0 3.8 3 2 0 3 3 2 2 AAA domain RuvB_N PF05496.7 gi|336254250|ref|YP_004597357.1| - 1.8e-10 40.2 0.0 0.00046 19.2 0.0 2.7 2 0 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_5 PF07728.9 gi|336254250|ref|YP_004597357.1| - 7.6e-10 38.6 0.0 0.00035 20.3 0.0 3.2 2 1 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_33 PF13671.1 gi|336254250|ref|YP_004597357.1| - 1.2e-09 38.1 0.0 0.0022 17.8 0.0 3.6 3 1 0 3 3 2 2 AAA domain AAA_2 PF07724.9 gi|336254250|ref|YP_004597357.1| - 5.7e-09 36.1 0.0 0.00067 19.6 0.0 2.7 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_14 PF13173.1 gi|336254250|ref|YP_004597357.1| - 2.7e-08 33.7 0.0 0.01 15.7 0.0 2.4 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.12 gi|336254250|ref|YP_004597357.1| - 3.2e-08 33.1 0.7 0.0086 15.5 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_16 PF13191.1 gi|336254250|ref|YP_004597357.1| - 7.2e-08 32.6 9.4 0.0057 16.6 0.4 5.3 3 2 0 3 3 2 2 AAA ATPase domain AAA_22 PF13401.1 gi|336254250|ref|YP_004597357.1| - 1.7e-07 31.4 0.5 0.052 13.6 0.0 3.8 2 2 0 2 2 2 2 AAA domain AAA_18 PF13238.1 gi|336254250|ref|YP_004597357.1| - 6.8e-07 29.6 0.0 0.042 14.1 0.0 2.6 2 0 0 2 2 2 2 AAA domain NACHT PF05729.7 gi|336254250|ref|YP_004597357.1| - 8.7e-07 28.7 0.5 2.4 7.7 0.0 4.3 2 2 2 4 4 4 1 NACHT domain AAA_19 PF13245.1 gi|336254250|ref|YP_004597357.1| - 1.3e-06 28.0 5.3 0.022 14.4 0.0 4.7 5 0 0 5 5 5 2 Part of AAA domain RNA_helicase PF00910.17 gi|336254250|ref|YP_004597357.1| - 1.5e-06 28.3 0.0 0.067 13.3 0.0 2.5 2 0 0 2 2 2 2 RNA helicase AAA_25 PF13481.1 gi|336254250|ref|YP_004597357.1| - 3.8e-06 26.4 10.9 0.27 10.5 0.1 4.6 3 2 2 5 5 4 2 AAA domain AAA_28 PF13521.1 gi|336254250|ref|YP_004597357.1| - 1e-05 25.5 0.1 0.2 11.6 0.0 3.6 2 2 0 2 2 2 2 AAA domain Zeta_toxin PF06414.7 gi|336254250|ref|YP_004597357.1| - 1.3e-05 24.4 0.0 0.17 10.9 0.0 2.4 2 0 0 2 2 2 2 Zeta toxin Viral_helicase1 PF01443.13 gi|336254250|ref|YP_004597357.1| - 4.1e-05 23.2 0.0 0.073 12.5 0.0 2.2 2 0 0 2 2 2 2 Viral (Superfamily 1) RNA helicase Sigma54_activ_2 PF14532.1 gi|336254250|ref|YP_004597357.1| - 9.2e-05 22.5 0.0 0.54 10.2 0.0 2.7 2 0 0 2 2 2 2 Sigma-54 interaction domain Mg_chelatase PF01078.16 gi|336254250|ref|YP_004597357.1| - 9.3e-05 21.6 0.4 0.33 10.0 0.0 2.8 3 0 0 3 3 2 2 Magnesium chelatase, subunit ChlI AAA_11 PF13086.1 gi|336254250|ref|YP_004597357.1| - 0.00024 20.7 0.0 0.38 10.2 0.0 2.2 2 0 0 2 2 2 2 AAA domain TIP49 PF06068.8 gi|336254250|ref|YP_004597357.1| - 0.00026 19.8 0.0 0.44 9.1 0.0 2.2 2 0 0 2 2 2 2 TIP49 C-terminus SKI PF01202.17 gi|336254250|ref|YP_004597357.1| - 0.00029 20.7 0.0 0.74 9.6 0.0 2.6 2 0 0 2 2 2 2 Shikimate kinase AAA_3 PF07726.6 gi|336254250|ref|YP_004597357.1| - 0.00044 19.8 0.0 0.56 9.8 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) ABC_tran PF00005.22 gi|336254250|ref|YP_004597357.1| - 0.0011 19.2 0.0 2.1 8.6 0.0 2.7 2 1 0 2 2 2 1 ABC transporter Rad17 PF03215.10 gi|336254250|ref|YP_004597357.1| - 0.0028 16.4 0.0 1.2 7.6 0.0 2.1 2 0 0 2 2 2 2 Rad17 cell cycle checkpoint protein AAA_24 PF13479.1 gi|336254250|ref|YP_004597357.1| - 0.0033 17.0 0.0 0.47 10.0 0.0 2.5 2 0 0 2 2 2 1 AAA domain Arch_ATPase PF01637.13 gi|336254250|ref|YP_004597357.1| - 0.0076 15.9 0.0 9.3 5.8 0.0 3.2 2 1 1 3 3 3 0 Archaeal ATPase Sigma54_activat PF00158.21 gi|336254250|ref|YP_004597357.1| - 0.011 15.1 0.2 26 4.2 0.0 3.8 4 0 0 4 4 4 0 Sigma-54 interaction domain Cytidylate_kin2 PF13189.1 gi|336254250|ref|YP_004597357.1| - 0.011 15.6 0.0 2.4 8.0 0.0 2.6 2 0 0 2 2 2 0 Cytidylate kinase-like family Bac_DnaA PF00308.13 gi|336254250|ref|YP_004597357.1| - 0.037 13.6 0.5 19 4.7 0.0 3.3 3 1 0 3 3 3 0 Bacterial dnaA protein GLTSCR1 PF15249.1 gi|336254250|ref|YP_004597357.1| - 0.041 13.9 1.1 2.4 8.3 0.1 3.5 3 0 0 3 3 3 0 Glioma tumor suppressor candidate region CbiA PF01656.18 gi|336254250|ref|YP_004597357.1| - 0.048 13.0 0.0 7.9 5.8 0.0 2.3 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain KTI12 PF08433.5 gi|336254250|ref|YP_004597357.1| - 0.072 12.2 0.0 9.7 5.3 0.0 2.3 2 0 0 2 2 2 0 Chromatin associated protein KTI12 PhoH PF02562.11 gi|336254250|ref|YP_004597357.1| - 0.11 11.7 0.9 9.4 5.4 0.0 2.3 2 0 0 2 2 2 0 PhoH-like protein SMC_N PF02463.14 gi|336254250|ref|YP_004597357.1| - 0.13 11.4 1.1 34 3.5 0.0 3.7 4 0 0 4 4 4 0 RecF/RecN/SMC N terminal domain KaiC PF06745.8 gi|336254250|ref|YP_004597357.1| - 0.18 10.9 0.1 28 3.7 0.0 2.8 3 0 0 3 3 3 0 KaiC Parvo_NS1 PF01057.12 gi|336254250|ref|YP_004597357.1| - 0.22 10.3 0.1 7.8 5.2 0.1 2.1 2 0 0 2 2 2 0 Parvovirus non-structural protein NS1 CDC45 PF02724.9 gi|336254250|ref|YP_004597357.1| - 1.2 7.0 4.5 1.8 6.4 3.1 1.2 1 0 0 1 1 1 0 CDC45-like protein Thi4 PF01946.12 gi|336254251|ref|YP_004597358.1| - 2.9e-61 206.4 0.3 4.5e-49 166.6 0.1 2.2 1 1 0 2 2 2 2 Thi4 family DAO PF01266.19 gi|336254251|ref|YP_004597358.1| - 1.6e-11 43.7 0.7 6.2e-07 28.6 0.1 2.2 1 1 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|336254251|ref|YP_004597358.1| - 1.9e-11 43.4 0.3 5.9e-08 31.9 0.1 2.3 1 1 1 2 2 2 2 FAD binding domain FAD_oxidored PF12831.2 gi|336254251|ref|YP_004597358.1| - 3.9e-11 42.6 0.1 5.9e-11 42.0 0.1 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|336254251|ref|YP_004597358.1| - 1.6e-09 37.3 0.0 3e-09 36.3 0.0 1.4 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.1 gi|336254251|ref|YP_004597358.1| - 2.1e-08 34.0 0.3 4.6e-08 32.9 0.2 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|336254251|ref|YP_004597358.1| - 4.1e-07 28.8 0.0 5.7e-07 28.3 0.0 1.2 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox_3 PF13738.1 gi|336254251|ref|YP_004597358.1| - 7.3e-07 29.4 0.0 1e-06 28.9 0.0 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|336254251|ref|YP_004597358.1| - 8e-07 29.1 0.7 1.3e-06 28.4 0.1 1.7 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|336254251|ref|YP_004597358.1| - 0.00012 21.0 0.1 0.017 14.0 0.0 2.1 2 0 0 2 2 2 1 Lycopene cyclase protein Pyr_redox PF00070.22 gi|336254251|ref|YP_004597358.1| - 0.00021 21.6 0.5 0.00058 20.2 0.1 1.9 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.9 gi|336254251|ref|YP_004597358.1| - 0.00024 19.8 0.1 0.062 11.9 0.0 2.1 2 0 0 2 2 2 2 Tryptophan halogenase NAD_binding_7 PF13241.1 gi|336254251|ref|YP_004597358.1| - 0.0003 21.0 0.1 0.00075 19.7 0.0 1.7 1 1 0 1 1 1 1 Putative NAD(P)-binding NAD_binding_9 PF13454.1 gi|336254251|ref|YP_004597358.1| - 0.0005 19.8 0.3 0.0021 17.8 0.1 1.9 2 0 0 2 2 2 1 FAD-NAD(P)-binding GIDA PF01134.17 gi|336254251|ref|YP_004597358.1| - 0.001 18.0 0.1 0.0017 17.2 0.0 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A Amino_oxidase PF01593.19 gi|336254251|ref|YP_004597358.1| - 0.0013 17.9 0.0 0.0038 16.3 0.0 1.7 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase Shikimate_DH PF01488.15 gi|336254251|ref|YP_004597358.1| - 0.0032 17.5 0.0 0.046 13.8 0.0 2.3 3 0 0 3 3 2 1 Shikimate / quinate 5-dehydrogenase TrkA_N PF02254.13 gi|336254251|ref|YP_004597358.1| - 0.052 13.5 0.4 0.13 12.2 0.0 1.8 2 0 0 2 2 2 0 TrkA-N domain Copper-bind PF00127.15 gi|336254253|ref|YP_004597360.1| - 3e-14 53.0 0.1 6.4e-14 51.9 0.0 1.5 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.1 gi|336254253|ref|YP_004597360.1| - 0.001 18.9 0.0 0.36 10.7 0.0 2.1 2 0 0 2 2 2 2 Cupredoxin-like domain DUF1375 PF07119.7 gi|336254253|ref|YP_004597360.1| - 0.086 12.6 0.1 0.13 12.1 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1375) CDP-OH_P_transf PF01066.16 gi|336254254|ref|YP_004597361.1| - 3.5e-08 33.6 18.5 3e-07 30.6 12.8 2.6 1 1 0 1 1 1 1 CDP-alcohol phosphatidyltransferase HEAT_2 PF13646.1 gi|336254255|ref|YP_004597362.1| - 2.8e-21 75.6 6.4 1.5e-12 47.6 3.1 3.8 1 1 2 3 3 3 3 HEAT repeats HEAT_PBS PF03130.11 gi|336254255|ref|YP_004597362.1| - 1.9e-17 61.9 7.8 3.6e-06 26.9 0.2 6.0 5 0 0 5 5 5 4 PBS lyase HEAT-like repeat HEAT_EZ PF13513.1 gi|336254255|ref|YP_004597362.1| - 2e-08 34.4 4.8 0.0024 18.3 0.3 3.7 3 0 0 3 3 3 2 HEAT-like repeat HEAT PF02985.17 gi|336254255|ref|YP_004597362.1| - 3.7e-06 26.5 0.2 0.035 14.1 0.0 3.4 3 0 0 3 3 3 2 HEAT repeat FlxA PF14282.1 gi|336254255|ref|YP_004597362.1| - 0.0048 16.8 1.8 0.021 14.7 0.9 2.0 1 1 1 2 2 2 1 FlxA-like protein Cytochrom_B562 PF07361.6 gi|336254255|ref|YP_004597362.1| - 0.033 14.5 1.8 6.9 7.1 0.7 2.9 2 1 1 3 3 3 0 Cytochrome b562 Arm PF00514.18 gi|336254255|ref|YP_004597362.1| - 0.043 13.6 0.0 5.8 6.8 0.0 3.2 1 1 2 3 3 3 0 Armadillo/beta-catenin-like repeat PilJ PF13675.1 gi|336254255|ref|YP_004597362.1| - 0.054 13.8 10.4 1.2 9.5 1.8 4.3 2 2 2 4 4 4 0 Type IV pili methyl-accepting chemotaxis transducer N-term AATF-Che1 PF13339.1 gi|336254255|ref|YP_004597362.1| - 0.079 13.1 4.5 0.27 11.3 2.7 2.1 2 0 0 2 2 2 0 Apoptosis antagonizing transcription factor NPV_P10 PF05531.7 gi|336254255|ref|YP_004597362.1| - 0.1 12.8 0.5 0.1 12.8 0.3 3.3 4 0 0 4 4 4 0 Nucleopolyhedrovirus P10 protein Lactamase_B_3 PF13483.1 gi|336254256|ref|YP_004597363.1| - 1e-28 100.0 0.1 1.6e-28 99.5 0.1 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|336254256|ref|YP_004597363.1| - 1.7e-05 24.4 0.1 2.3e-05 24.0 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain XdhC_C PF13478.1 gi|336254256|ref|YP_004597363.1| - 0.033 14.4 0.0 0.049 13.9 0.0 1.3 1 0 0 1 1 1 0 XdhC Rossmann domain PLDc_2 PF13091.1 gi|336254257|ref|YP_004597364.1| - 2.5e-38 130.6 0.0 1.2e-20 73.5 0.0 2.2 2 0 0 2 2 2 2 PLD-like domain PLDc PF00614.17 gi|336254257|ref|YP_004597364.1| - 5e-08 32.5 0.4 6.3e-06 25.8 0.1 2.6 2 0 0 2 2 2 1 Phospholipase D Active site motif Regulator_TrmB PF11495.3 gi|336254257|ref|YP_004597364.1| - 6.3e-06 25.3 0.1 0.069 12.1 0.1 2.4 2 0 0 2 2 2 2 Archaeal transcriptional regulator TrmB DUF1669 PF07894.7 gi|336254257|ref|YP_004597364.1| - 0.0041 16.3 0.0 0.089 11.9 0.0 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF1669) Fe_dep_repress PF01325.14 gi|336254258|ref|YP_004597365.1| - 2.5e-17 62.5 0.1 6.2e-17 61.2 0.0 1.7 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repr_C PF02742.10 gi|336254258|ref|YP_004597365.1| - 2.5e-13 49.4 0.3 4.7e-13 48.6 0.2 1.4 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain HTH_27 PF13463.1 gi|336254258|ref|YP_004597365.1| - 5e-06 26.7 0.0 8.5e-06 26.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|336254258|ref|YP_004597365.1| - 0.00017 21.2 0.0 0.00033 20.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|336254258|ref|YP_004597365.1| - 0.00017 21.2 0.0 0.00031 20.4 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR_2 PF12802.2 gi|336254258|ref|YP_004597365.1| - 0.00018 21.0 0.0 0.00034 20.2 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|336254258|ref|YP_004597365.1| - 0.00023 20.8 0.0 0.00041 20.0 0.0 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|336254258|ref|YP_004597365.1| - 0.00048 19.7 0.0 0.00077 19.1 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.15 gi|336254258|ref|YP_004597365.1| - 0.003 17.6 0.0 0.0046 17.0 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator HTH_24 PF13412.1 gi|336254258|ref|YP_004597365.1| - 0.0039 16.5 0.0 0.0068 15.7 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_12 PF08461.5 gi|336254258|ref|YP_004597365.1| - 0.0061 16.2 0.1 0.013 15.2 0.1 1.6 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain GntR PF00392.16 gi|336254258|ref|YP_004597365.1| - 0.016 14.6 0.0 0.043 13.2 0.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_5 PF01022.15 gi|336254258|ref|YP_004597365.1| - 0.04 13.5 0.0 0.33 10.6 0.0 2.1 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family DUF4423 PF14394.1 gi|336254258|ref|YP_004597365.1| - 0.056 12.9 0.0 0.085 12.3 0.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_AsnC-type PF13404.1 gi|336254258|ref|YP_004597365.1| - 0.07 12.6 0.0 0.19 11.3 0.0 1.7 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_45 PF14947.1 gi|336254258|ref|YP_004597365.1| - 0.094 12.5 0.0 0.15 11.9 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_13 PF11972.3 gi|336254258|ref|YP_004597365.1| - 0.13 12.1 0.0 0.25 11.2 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain HTH_11 PF08279.7 gi|336254258|ref|YP_004597365.1| - 0.13 11.8 0.0 0.29 10.8 0.0 1.7 1 0 0 1 1 1 0 HTH domain HTH_IclR PF09339.5 gi|336254258|ref|YP_004597365.1| - 0.14 11.7 0.1 0.34 10.5 0.0 1.7 2 0 0 2 2 2 0 IclR helix-turn-helix domain Rubrerythrin PF02915.12 gi|336254259|ref|YP_004597366.1| - 0.00051 20.3 6.1 0.00061 20.1 3.5 1.7 1 1 1 2 2 2 1 Rubrerythrin Metal_resist PF13801.1 gi|336254259|ref|YP_004597366.1| - 0.0085 16.0 2.8 0.0085 16.0 1.9 1.7 2 0 0 2 2 2 1 Heavy-metal resistance FUSC PF04632.7 gi|336254259|ref|YP_004597366.1| - 0.14 10.5 1.0 0.15 10.5 0.7 1.1 1 0 0 1 1 1 0 Fusaric acid resistance protein family DUF4226 PF10774.4 gi|336254259|ref|YP_004597366.1| - 0.72 9.9 4.4 1.2 9.2 1.7 2.3 1 1 2 3 3 3 0 Domain of unknown function (DUF4226) AAA_16 PF13191.1 gi|336254259|ref|YP_004597366.1| - 5.1 7.0 6.6 4.4 7.2 3.6 1.5 1 1 1 2 2 2 0 AAA ATPase domain UPF0051 PF01458.12 gi|336254260|ref|YP_004597367.1| - 1.1e-65 221.3 2.9 1.4e-65 220.9 2.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) UPF0051 PF01458.12 gi|336254261|ref|YP_004597368.1| - 5.1e-69 232.2 0.4 7.9e-69 231.6 0.3 1.3 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) ABC_tran PF00005.22 gi|336254262|ref|YP_004597369.1| - 1.1e-15 58.1 0.1 4.2e-15 56.2 0.0 1.8 1 1 0 1 1 1 1 ABC transporter SMC_N PF02463.14 gi|336254262|ref|YP_004597369.1| - 3.8e-06 26.2 0.4 0.025 13.8 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|336254262|ref|YP_004597369.1| - 1.9e-05 24.7 0.2 0.0018 18.3 0.0 2.2 1 1 1 2 2 2 1 AAA domain AAA PF00004.24 gi|336254262|ref|YP_004597369.1| - 0.00012 22.2 0.1 0.12 12.5 0.0 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|336254262|ref|YP_004597369.1| - 0.00025 21.8 1.0 0.0017 19.1 0.7 2.6 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|336254262|ref|YP_004597369.1| - 0.0012 18.3 0.1 0.0021 17.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_5 PF07728.9 gi|336254262|ref|YP_004597369.1| - 0.0025 17.5 0.7 1.9 8.1 0.0 2.7 2 1 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_22 PF13401.1 gi|336254262|ref|YP_004597369.1| - 0.0032 17.6 0.0 0.25 11.4 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|336254262|ref|YP_004597369.1| - 0.0049 17.2 7.0 0.047 14.0 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|336254262|ref|YP_004597369.1| - 0.016 15.0 0.0 0.025 14.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|336254262|ref|YP_004597369.1| - 0.028 14.7 1.6 0.11 12.8 0.0 2.6 2 1 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|336254262|ref|YP_004597369.1| - 0.035 13.5 0.0 0.087 12.2 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_13 PF13166.1 gi|336254262|ref|YP_004597369.1| - 0.098 11.1 0.9 0.2 10.0 0.6 1.5 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|336254262|ref|YP_004597369.1| - 0.12 11.7 0.3 0.52 9.6 0.0 1.8 2 0 0 2 2 2 0 AAA-like domain DNA_pol_B PF00136.16 gi|336254263|ref|YP_004597370.1| - 1e-61 209.1 0.0 4.4e-61 207.0 0.0 1.7 1 1 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.14 gi|336254263|ref|YP_004597370.1| - 2.4e-35 121.9 0.0 6e-35 120.6 0.0 1.7 2 0 0 2 2 2 1 DNA polymerase family B, exonuclease domain DNA_pol_B_2 PF03175.8 gi|336254263|ref|YP_004597370.1| - 0.084 11.5 0.0 0.93 8.0 0.0 2.1 2 0 0 2 2 2 0 DNA polymerase type B, organellar and viral DUF3318 PF11780.3 gi|336254265|ref|YP_004597372.1| - 0.0035 16.9 0.5 0.0059 16.1 0.3 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3318) DUF3995 PF13160.1 gi|336254265|ref|YP_004597372.1| - 0.012 15.6 0.1 0.017 15.1 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3995) DUF4131 PF13567.1 gi|336254265|ref|YP_004597372.1| - 0.023 14.0 0.0 0.031 13.6 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF1510 PF07423.6 gi|336254265|ref|YP_004597372.1| - 0.027 13.8 1.1 0.041 13.2 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1510) SpoIIIAH PF12685.2 gi|336254265|ref|YP_004597372.1| - 0.083 12.3 0.1 0.083 12.3 0.0 2.0 2 0 0 2 2 2 0 SpoIIIAH-like protein IncA PF04156.9 gi|336254265|ref|YP_004597372.1| - 0.11 12.0 0.0 0.15 11.6 0.0 1.2 1 0 0 1 1 1 0 IncA protein AAA_23 PF13476.1 gi|336254267|ref|YP_004597374.1| - 2.9e-13 50.6 104.9 1.5e+04 -15.1 72.7 6.8 1 1 0 1 1 0 0 AAA domain AAA_13 PF13166.1 gi|336254267|ref|YP_004597374.1| - 3.9e-13 48.7 66.8 2.9e-09 35.9 1.7 5.1 2 1 3 5 5 5 4 AAA domain AAA_21 PF13304.1 gi|336254267|ref|YP_004597374.1| - 2.8e-12 47.2 0.8 1e-06 28.9 0.8 3.3 2 1 1 3 3 3 2 AAA domain AAA_15 PF13175.1 gi|336254267|ref|YP_004597374.1| - 4e-11 42.6 0.1 1.2e-05 24.5 0.0 2.5 2 0 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.14 gi|336254267|ref|YP_004597374.1| - 3.3e-09 36.3 55.3 5.6e-08 32.2 38.3 2.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_27 PF13514.1 gi|336254267|ref|YP_004597374.1| - 1.1e-07 30.0 39.4 1.1e-07 30.0 27.3 3.0 1 1 1 3 3 3 2 AAA domain IncA PF04156.9 gi|336254267|ref|YP_004597374.1| - 4.1e-06 26.5 128.4 0.043 13.4 11.3 6.0 2 2 3 5 5 4 3 IncA protein AAA_29 PF13555.1 gi|336254267|ref|YP_004597374.1| - 1e-05 24.9 0.0 1.9e-05 24.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain Reo_sigmaC PF04582.7 gi|336254267|ref|YP_004597374.1| - 1.3e-05 24.5 18.4 0.022 13.9 0.3 4.5 3 1 1 4 4 4 3 Reovirus sigma C capsid protein Laminin_II PF06009.7 gi|336254267|ref|YP_004597374.1| - 3.2e-05 23.6 55.1 0.0044 16.7 3.1 6.5 4 1 1 5 5 5 3 Laminin Domain II SbcCD_C PF13558.1 gi|336254267|ref|YP_004597374.1| - 0.00042 20.1 0.3 0.0013 18.6 0.0 2.0 2 0 0 2 2 1 1 Putative exonuclease SbcCD, C subunit CENP-F_leu_zip PF10473.4 gi|336254267|ref|YP_004597374.1| - 0.0013 18.6 5.0 0.0013 18.6 3.5 6.9 2 2 5 7 7 7 3 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Spc7 PF08317.6 gi|336254267|ref|YP_004597374.1| - 0.0017 17.0 96.8 0.024 13.3 7.9 6.0 2 2 1 4 4 4 3 Spc7 kinetochore protein APG6 PF04111.7 gi|336254267|ref|YP_004597374.1| - 0.0087 15.1 115.7 0.096 11.7 14.5 6.3 2 2 5 7 7 7 4 Autophagy protein Apg6 DUF3584 PF12128.3 gi|336254267|ref|YP_004597374.1| - 0.019 12.3 109.8 0.034 11.4 16.6 4.5 2 1 3 5 5 5 0 Protein of unknown function (DUF3584) Viral_helicase1 PF01443.13 gi|336254267|ref|YP_004597374.1| - 0.021 14.3 0.3 0.14 11.6 0.0 2.3 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase Atg14 PF10186.4 gi|336254267|ref|YP_004597374.1| - 0.058 12.3 87.0 0.036 13.0 7.4 5.9 2 2 4 6 6 6 0 UV radiation resistance protein and autophagy-related subunit 14 TBPIP PF07106.8 gi|336254267|ref|YP_004597374.1| - 0.074 12.6 83.3 0.013 15.0 5.7 6.3 2 2 6 8 8 8 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) AAA_33 PF13671.1 gi|336254267|ref|YP_004597374.1| - 0.096 12.5 0.0 0.096 12.5 0.0 3.7 4 0 0 4 4 4 0 AAA domain NACHT PF05729.7 gi|336254267|ref|YP_004597374.1| - 0.11 12.1 0.0 0.11 12.1 0.0 2.2 2 0 0 2 2 2 0 NACHT domain DUF4200 PF13863.1 gi|336254267|ref|YP_004597374.1| - 0.54 10.2 123.5 0.05 13.5 7.9 8.4 2 2 5 7 7 7 0 Domain of unknown function (DUF4200) TPR_MLP1_2 PF07926.7 gi|336254267|ref|YP_004597374.1| - 2 8.1 97.1 0.059 13.1 5.0 7.4 1 1 5 7 7 7 0 TPR/MLP1/MLP2-like protein MCPsignal PF00015.16 gi|336254267|ref|YP_004597374.1| - 8.5 5.8 42.7 2.5 7.5 0.5 4.9 2 2 2 5 5 5 0 Methyl-accepting chemotaxis protein (MCP) signalling domain Seryl_tRNA_N PF02403.17 gi|336254267|ref|YP_004597374.1| - 8.9 6.3 95.1 0.21 11.6 9.9 7.8 2 2 5 7 7 7 0 Seryl-tRNA synthetase N-terminal domain Metallophos_2 PF12850.2 gi|336254268|ref|YP_004597375.1| - 3.9e-15 56.0 0.1 6.5e-15 55.3 0.1 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|336254268|ref|YP_004597375.1| - 6.4e-13 48.5 1.0 1e-12 47.9 0.7 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Defensin_propep PF00879.13 gi|336254268|ref|YP_004597375.1| - 1.8 8.5 8.8 2.3 8.2 0.0 3.7 3 0 0 3 3 3 0 Defensin propeptide HTH_24 PF13412.1 gi|336254269|ref|YP_004597376.1| - 2.8e-06 26.6 0.0 4e-06 26.1 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TFIIE_alpha PF02002.12 gi|336254269|ref|YP_004597376.1| - 0.00024 20.5 0.1 0.00035 20.0 0.1 1.3 1 1 0 1 1 1 1 TFIIE alpha subunit GntR PF00392.16 gi|336254269|ref|YP_004597376.1| - 0.00092 18.6 0.0 0.0013 18.0 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family MarR_2 PF12802.2 gi|336254269|ref|YP_004597376.1| - 0.0014 18.2 0.0 0.0019 17.8 0.0 1.2 1 0 0 1 1 1 1 MarR family Sigma70_r4_2 PF08281.7 gi|336254269|ref|YP_004597376.1| - 0.0033 16.8 0.0 0.0055 16.1 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_28 PF13518.1 gi|336254269|ref|YP_004597376.1| - 0.0033 17.3 0.0 0.0043 17.0 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|336254269|ref|YP_004597376.1| - 0.0078 15.9 0.0 0.0096 15.6 0.0 1.2 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain TrmB PF01978.14 gi|336254269|ref|YP_004597376.1| - 0.026 14.2 0.1 0.031 13.9 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_12 PF08461.5 gi|336254269|ref|YP_004597376.1| - 0.05 13.3 0.1 0.15 11.8 0.1 2.0 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_Mga PF08280.6 gi|336254269|ref|YP_004597376.1| - 0.051 13.3 0.0 0.066 12.9 0.0 1.2 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain MarR PF01047.17 gi|336254269|ref|YP_004597376.1| - 0.071 12.8 0.1 0.093 12.4 0.0 1.1 1 0 0 1 1 1 0 MarR family RepL PF05732.6 gi|336254269|ref|YP_004597376.1| - 0.082 12.1 0.0 0.1 11.7 0.0 1.1 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) Rrf2 PF02082.15 gi|336254269|ref|YP_004597376.1| - 0.085 12.9 0.0 0.11 12.6 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator HTH_23 PF13384.1 gi|336254269|ref|YP_004597376.1| - 0.086 12.5 0.0 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain HTH_27 PF13463.1 gi|336254269|ref|YP_004597376.1| - 0.093 13.0 0.0 0.14 12.5 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain PI3K_C2 PF00792.19 gi|336254269|ref|YP_004597376.1| - 0.11 12.2 0.0 0.12 12.1 0.0 1.2 1 0 0 1 1 1 0 Phosphoinositide 3-kinase C2 AAA PF00004.24 gi|336254270|ref|YP_004597377.1| - 3.4e-45 153.4 1.8 4.6e-45 153.0 0.0 2.1 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_2 PF07724.9 gi|336254270|ref|YP_004597377.1| - 4e-09 36.6 0.0 1.5e-08 34.7 0.0 2.1 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_22 PF13401.1 gi|336254270|ref|YP_004597377.1| - 6.1e-07 29.6 2.8 2.2e-05 24.5 0.1 2.9 2 2 0 2 2 2 1 AAA domain RuvB_N PF05496.7 gi|336254270|ref|YP_004597377.1| - 6.6e-07 28.6 0.0 1.7e-06 27.2 0.0 1.6 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_5 PF07728.9 gi|336254270|ref|YP_004597377.1| - 2.6e-06 27.2 1.9 8.8e-06 25.4 0.2 2.6 2 1 0 2 2 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.1 gi|336254270|ref|YP_004597377.1| - 1.7e-05 24.9 4.2 0.00013 22.0 0.0 3.5 2 2 0 2 2 2 1 AAA ATPase domain AAA_17 PF13207.1 gi|336254270|ref|YP_004597377.1| - 2.3e-05 25.2 2.4 4e-05 24.4 0.1 2.6 2 2 0 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|336254270|ref|YP_004597377.1| - 0.00016 21.5 0.2 0.0014 18.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain DUF815 PF05673.8 gi|336254270|ref|YP_004597377.1| - 0.00042 19.3 0.0 0.00093 18.1 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF815) GrpE PF01025.14 gi|336254270|ref|YP_004597377.1| - 0.00072 19.1 8.9 0.00072 19.1 6.2 2.4 3 0 0 3 3 2 1 GrpE TIP49 PF06068.8 gi|336254270|ref|YP_004597377.1| - 0.00079 18.2 0.9 0.002 16.9 0.0 2.1 2 0 0 2 2 2 1 TIP49 C-terminus IstB_IS21 PF01695.12 gi|336254270|ref|YP_004597377.1| - 0.00096 18.6 0.4 0.0025 17.2 0.0 1.9 2 0 0 2 2 2 1 IstB-like ATP binding protein Mg_chelatase PF01078.16 gi|336254270|ref|YP_004597377.1| - 0.0012 18.1 0.2 0.0037 16.4 0.1 1.8 1 1 0 1 1 1 1 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.21 gi|336254270|ref|YP_004597377.1| - 0.0012 18.3 0.1 0.031 13.7 0.1 2.7 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_33 PF13671.1 gi|336254270|ref|YP_004597377.1| - 0.0012 18.7 0.1 0.0084 15.9 0.0 2.3 1 1 0 2 2 1 1 AAA domain NACHT PF05729.7 gi|336254270|ref|YP_004597377.1| - 0.0014 18.3 0.1 0.047 13.3 0.0 2.5 1 1 1 2 2 2 1 NACHT domain AAA_19 PF13245.1 gi|336254270|ref|YP_004597377.1| - 0.0014 18.3 0.1 0.004 16.8 0.1 1.7 1 0 0 1 1 1 1 Part of AAA domain AAA_25 PF13481.1 gi|336254270|ref|YP_004597377.1| - 0.0017 17.8 5.9 0.033 13.5 0.1 3.2 2 1 1 3 3 3 1 AAA domain ATG16 PF08614.6 gi|336254270|ref|YP_004597377.1| - 0.0024 17.7 10.9 0.0024 17.7 7.6 2.9 2 1 1 3 3 3 1 Autophagy protein 16 (ATG16) RNA_helicase PF00910.17 gi|336254270|ref|YP_004597377.1| - 0.0028 17.8 0.0 0.0079 16.3 0.0 1.9 1 0 0 1 1 1 1 RNA helicase AAA_28 PF13521.1 gi|336254270|ref|YP_004597377.1| - 0.0069 16.3 2.6 0.01 15.7 0.0 2.7 2 1 0 3 3 3 1 AAA domain AAA_3 PF07726.6 gi|336254270|ref|YP_004597377.1| - 0.0084 15.7 0.2 0.052 13.1 0.0 2.3 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.1 gi|336254270|ref|YP_004597377.1| - 0.0088 15.6 0.3 0.0088 15.6 0.2 2.2 2 2 0 2 2 2 1 AAA domain Zeta_toxin PF06414.7 gi|336254270|ref|YP_004597377.1| - 0.0091 15.1 0.3 0.027 13.5 0.0 2.0 2 0 0 2 2 2 1 Zeta toxin AAA_23 PF13476.1 gi|336254270|ref|YP_004597377.1| - 0.01 16.1 6.1 2.8 8.2 0.0 2.8 2 0 0 2 2 2 0 AAA domain Sigma54_activ_2 PF14532.1 gi|336254270|ref|YP_004597377.1| - 0.013 15.5 0.3 0.075 13.0 0.0 2.5 2 1 0 2 2 2 0 Sigma-54 interaction domain AAA_18 PF13238.1 gi|336254270|ref|YP_004597377.1| - 0.014 15.7 4.6 0.019 15.3 0.0 2.8 2 2 0 2 2 2 0 AAA domain Creatininase PF02633.9 gi|336254270|ref|YP_004597377.1| - 0.014 14.5 0.0 0.025 13.6 0.0 1.4 1 0 0 1 1 1 0 Creatinine amidohydrolase Arch_ATPase PF01637.13 gi|336254270|ref|YP_004597377.1| - 0.014 15.0 2.2 0.16 11.6 0.0 3.0 2 1 0 2 2 2 0 Archaeal ATPase NB-ARC PF00931.17 gi|336254270|ref|YP_004597377.1| - 0.018 13.9 0.2 0.099 11.4 0.0 2.2 2 0 0 2 2 2 0 NB-ARC domain ADIP PF11559.3 gi|336254270|ref|YP_004597377.1| - 0.018 14.9 7.1 0.057 13.3 4.9 1.8 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding bZIP_1 PF00170.16 gi|336254270|ref|YP_004597377.1| - 0.022 14.7 13.3 0.19 11.7 3.9 2.7 1 1 1 2 2 2 0 bZIP transcription factor Parvo_NS1 PF01057.12 gi|336254270|ref|YP_004597377.1| - 0.022 13.6 0.0 0.049 12.4 0.0 1.5 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 AAA_11 PF13086.1 gi|336254270|ref|YP_004597377.1| - 0.033 13.7 3.0 0.33 10.4 0.0 2.5 2 1 0 2 2 2 0 AAA domain CPT PF07931.7 gi|336254270|ref|YP_004597377.1| - 0.037 13.6 0.0 0.093 12.3 0.0 1.8 1 0 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein KaiC PF06745.8 gi|336254270|ref|YP_004597377.1| - 0.047 12.8 8.8 0.32 10.0 0.0 3.7 3 1 1 4 4 4 0 KaiC UPF0079 PF02367.12 gi|336254270|ref|YP_004597377.1| - 0.078 12.6 0.0 0.17 11.5 0.0 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 IncA PF04156.9 gi|336254270|ref|YP_004597377.1| - 0.11 12.0 16.2 0.34 10.4 9.1 2.3 1 1 1 2 2 2 0 IncA protein Fmp27_WPPW PF10359.4 gi|336254270|ref|YP_004597377.1| - 0.15 10.4 6.1 0.28 9.5 4.2 1.5 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain Kinetocho_Slk19 PF12709.2 gi|336254270|ref|YP_004597377.1| - 0.17 11.9 7.5 0.11 12.6 3.4 2.0 2 0 0 2 2 1 0 Central kinetochore-associated ABC_tran PF00005.22 gi|336254270|ref|YP_004597377.1| - 0.24 11.7 4.9 0.29 11.4 0.0 2.7 2 1 0 2 2 1 0 ABC transporter NTPase_1 PF03266.10 gi|336254270|ref|YP_004597377.1| - 0.24 11.0 6.2 0.93 9.1 0.0 3.7 3 1 1 4 4 4 0 NTPase Atg14 PF10186.4 gi|336254270|ref|YP_004597377.1| - 0.27 10.1 3.8 0.45 9.4 2.6 1.4 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 DUF3373 PF11853.3 gi|336254270|ref|YP_004597377.1| - 0.39 9.1 2.6 0.71 8.3 1.8 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3373) DUF972 PF06156.8 gi|336254270|ref|YP_004597377.1| - 1.6 9.1 10.2 2.8 8.3 4.9 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF972) Viral_P18 PF04521.8 gi|336254270|ref|YP_004597377.1| - 1.6 8.1 4.6 4 6.8 3.2 1.7 1 0 0 1 1 1 0 ssRNA positive strand viral 18kD cysteine rich protein V_ATPase_I PF01496.14 gi|336254270|ref|YP_004597377.1| - 1.9 6.2 4.7 2.8 5.6 3.3 1.3 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family AAA_13 PF13166.1 gi|336254270|ref|YP_004597377.1| - 4.5 5.6 11.7 39 2.5 0.0 2.2 1 1 1 2 2 2 0 AAA domain APG6 PF04111.7 gi|336254270|ref|YP_004597377.1| - 5.8 5.8 15.3 5.7 5.8 9.8 1.7 1 1 0 1 1 1 0 Autophagy protein Apg6 Laminin_I PF06008.9 gi|336254270|ref|YP_004597377.1| - 6.3 6.0 16.8 38 3.4 7.3 3.2 2 1 1 3 3 3 0 Laminin Domain I DUF904 PF06005.7 gi|336254270|ref|YP_004597377.1| - 6.5 7.1 13.9 19 5.6 8.6 2.5 2 1 0 2 2 1 0 Protein of unknown function (DUF904) CDP-OH_P_tran_2 PF08009.6 gi|336254271|ref|YP_004597378.1| - 0.28 10.9 5.8 0.37 10.5 4.0 1.3 1 0 0 1 1 1 0 CDP-alcohol phosphatidyltransferase 2 GATase PF00117.23 gi|336254272|ref|YP_004597379.1| - 2.4e-35 121.7 0.0 2.7e-35 121.5 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|336254272|ref|YP_004597379.1| - 1.7e-13 50.5 2.4 1.4e-11 44.2 1.7 2.9 1 1 0 1 1 1 1 Peptidase C26 GATase_3 PF07685.9 gi|336254272|ref|YP_004597379.1| - 0.021 14.4 0.5 0.043 13.4 0.0 1.7 2 0 0 2 2 2 0 CobB/CobQ-like glutamine amidotransferase domain DUF3194 PF11419.3 gi|336254273|ref|YP_004597380.1| - 0.0001 22.4 0.1 0.00013 22.0 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3194) Prefoldin_2 PF01920.15 gi|336254274|ref|YP_004597381.1| - 8e-27 93.0 18.5 8.9e-27 92.9 12.9 1.0 1 0 0 1 1 1 1 Prefoldin subunit Prefoldin PF02996.12 gi|336254274|ref|YP_004597381.1| - 0.00082 19.0 16.7 0.039 13.5 11.6 2.5 1 1 0 1 1 1 1 Prefoldin subunit ALIX_LYPXL_bnd PF13949.1 gi|336254274|ref|YP_004597381.1| - 0.00092 18.2 8.2 0.0012 17.8 5.7 1.1 1 0 0 1 1 1 1 ALIX V-shaped domain binding to HIV FlaC_arch PF05377.6 gi|336254274|ref|YP_004597381.1| - 0.0059 16.4 3.4 0.0059 16.4 2.3 2.5 2 1 1 3 3 3 1 Flagella accessory protein C (FlaC) AAA_27 PF13514.1 gi|336254274|ref|YP_004597381.1| - 0.0073 14.0 8.0 0.01 13.5 5.5 1.1 1 0 0 1 1 1 1 AAA domain Laminin_II PF06009.7 gi|336254274|ref|YP_004597381.1| - 0.0089 15.7 9.1 0.012 15.3 6.3 1.2 1 0 0 1 1 1 1 Laminin Domain II DUF3584 PF12128.3 gi|336254274|ref|YP_004597381.1| - 0.0091 13.3 8.3 0.011 13.0 5.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) SASP PF00269.15 gi|336254274|ref|YP_004597381.1| - 0.018 14.8 1.2 0.044 13.6 0.7 1.7 1 1 0 1 1 1 0 Small, acid-soluble spore proteins, alpha/beta type CENP-F_leu_zip PF10473.4 gi|336254274|ref|YP_004597381.1| - 0.02 14.7 7.9 0.02 14.7 5.5 2.1 1 1 1 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 PAF-AH_p_II PF03403.8 gi|336254274|ref|YP_004597381.1| - 0.023 13.0 0.7 0.029 12.6 0.5 1.1 1 0 0 1 1 1 0 Platelet-activating factor acetylhydrolase, isoform II IncA PF04156.9 gi|336254274|ref|YP_004597381.1| - 0.043 13.4 19.4 0.23 11.0 4.4 2.0 2 0 0 2 2 2 0 IncA protein DUF2379 PF09543.5 gi|336254274|ref|YP_004597381.1| - 0.046 13.6 4.2 0.11 12.4 2.9 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF2379) TraF_2 PF13729.1 gi|336254274|ref|YP_004597381.1| - 0.06 12.1 0.2 0.06 12.1 0.1 2.0 1 1 1 2 2 2 0 F plasmid transfer operon, TraF, protein KfrA_N PF11740.3 gi|336254274|ref|YP_004597381.1| - 0.1 13.0 16.3 0.13 12.7 2.2 2.1 2 0 0 2 2 2 0 Plasmid replication region DNA-binding N-term Laminin_I PF06008.9 gi|336254274|ref|YP_004597381.1| - 0.16 11.2 15.2 0.98 8.6 1.3 2.0 1 1 1 2 2 2 0 Laminin Domain I WXG100 PF06013.7 gi|336254274|ref|YP_004597381.1| - 0.16 11.9 8.7 2.5 8.1 0.1 2.8 2 1 1 3 3 3 0 Proteins of 100 residues with WXG Fzo_mitofusin PF04799.8 gi|336254274|ref|YP_004597381.1| - 0.23 10.8 11.4 1.4 8.2 1.4 2.1 1 1 1 2 2 2 0 fzo-like conserved region Med10 PF09748.4 gi|336254274|ref|YP_004597381.1| - 0.25 11.1 4.8 2.6 7.8 3.3 2.0 1 1 0 1 1 1 0 Transcription factor subunit Med10 of Mediator complex PilJ PF13675.1 gi|336254274|ref|YP_004597381.1| - 0.35 11.1 9.6 0.36 11.1 1.0 2.3 1 1 0 1 1 1 0 Type IV pili methyl-accepting chemotaxis transducer N-term DUF4164 PF13747.1 gi|336254274|ref|YP_004597381.1| - 0.4 10.8 14.3 0.26 11.4 1.7 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4164) CDC37_N PF03234.9 gi|336254274|ref|YP_004597381.1| - 0.4 10.9 9.4 0.51 10.6 6.5 1.1 1 0 0 1 1 1 0 Cdc37 N terminal kinase binding DUF342 PF03961.8 gi|336254274|ref|YP_004597381.1| - 0.74 8.1 6.3 1.1 7.5 4.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF342) Syntaxin-6_N PF09177.6 gi|336254274|ref|YP_004597381.1| - 0.75 10.2 14.2 5.5 7.4 6.3 2.6 1 1 1 2 2 2 0 Syntaxin 6, N-terminal DUF2408 PF10303.4 gi|336254274|ref|YP_004597381.1| - 0.81 9.7 8.7 2.2 8.4 2.3 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF2408) Cortex-I_coil PF09304.5 gi|336254274|ref|YP_004597381.1| - 0.83 9.7 18.8 0.42 10.6 3.5 2.0 1 1 1 2 2 2 0 Cortexillin I, coiled coil DUF2353 PF09789.4 gi|336254274|ref|YP_004597381.1| - 1 8.5 11.4 1.4 8.0 7.9 1.1 1 0 0 1 1 1 0 Uncharacterized coiled-coil protein (DUF2353) Vac_Fusion PF02346.11 gi|336254274|ref|YP_004597381.1| - 1.1 8.7 3.6 2.5 7.5 0.2 2.2 2 0 0 2 2 2 0 Chordopoxvirus fusion protein NPV_P10 PF05531.7 gi|336254274|ref|YP_004597381.1| - 1.1 9.5 9.9 0.67 10.2 0.8 2.2 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein EzrA PF06160.7 gi|336254274|ref|YP_004597381.1| - 1.3 7.1 14.5 1.8 6.6 10.1 1.2 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA V-SNARE PF05008.10 gi|336254274|ref|YP_004597381.1| - 1.3 9.2 13.6 1.4 9.0 2.2 2.3 2 0 0 2 2 2 0 Vesicle transport v-SNARE protein N-terminus BLOC1_2 PF10046.4 gi|336254274|ref|YP_004597381.1| - 1.3 9.1 11.4 2.5 8.3 0.9 2.1 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 CK2S PF15011.1 gi|336254274|ref|YP_004597381.1| - 1.4 8.6 7.3 7.1 6.3 5.0 1.9 1 1 0 1 1 1 0 Casein Kinase 2 substrate DUF3347 PF11827.3 gi|336254274|ref|YP_004597381.1| - 2.2 8.2 6.2 3.1 7.7 4.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3347) DUF964 PF06133.6 gi|336254274|ref|YP_004597381.1| - 2.5 8.1 15.9 0.78 9.7 6.1 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF964) Cep57_CLD PF14073.1 gi|336254274|ref|YP_004597381.1| - 2.7 7.7 18.8 0.17 11.7 5.4 2.1 1 1 1 2 2 2 0 Centrosome localisation domain of Cep57 Snapin_Pallidin PF14712.1 gi|336254274|ref|YP_004597381.1| - 3 8.2 13.4 3.8 7.8 2.4 2.3 2 0 0 2 2 2 0 Snapin/Pallidin Viral_P18 PF04521.8 gi|336254274|ref|YP_004597381.1| - 3.3 7.1 9.2 0.24 10.8 1.0 2.1 1 1 2 3 3 3 0 ssRNA positive strand viral 18kD cysteine rich protein Sigma70_ner PF04546.8 gi|336254274|ref|YP_004597381.1| - 3.5 7.1 15.7 0.18 11.4 1.4 2.0 1 1 1 2 2 2 0 Sigma-70, non-essential region DUF4140 PF13600.1 gi|336254274|ref|YP_004597381.1| - 3.5 8.1 15.9 0.18 12.2 2.1 2.5 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) Seryl_tRNA_N PF02403.17 gi|336254274|ref|YP_004597381.1| - 3.5 7.6 14.9 1.3 9.0 1.1 2.1 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain TPR_MLP1_2 PF07926.7 gi|336254274|ref|YP_004597381.1| - 3.8 7.2 18.9 55 3.4 13.1 2.1 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein BRE1 PF08647.6 gi|336254274|ref|YP_004597381.1| - 3.9 7.5 13.7 2.3 8.2 2.3 2.1 1 1 1 2 2 2 0 BRE1 E3 ubiquitin ligase HSP70 PF00012.15 gi|336254274|ref|YP_004597381.1| - 4.2 5.1 10.0 5.2 4.8 7.0 1.0 1 0 0 1 1 1 0 Hsp70 protein V_ATPase_I PF01496.14 gi|336254274|ref|YP_004597381.1| - 4.2 5.0 14.6 20 2.8 10.3 1.7 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family Prominin PF05478.6 gi|336254274|ref|YP_004597381.1| - 4.3 4.7 5.3 5.9 4.3 3.7 1.2 1 0 0 1 1 1 0 Prominin Flagellin_N PF00669.15 gi|336254274|ref|YP_004597381.1| - 4.3 7.1 7.9 4 7.2 3.6 2.0 1 1 1 2 2 2 0 Bacterial flagellin N-terminal helical region XhlA PF10779.4 gi|336254274|ref|YP_004597381.1| - 4.7 7.2 18.4 0.41 10.5 1.9 2.2 2 0 0 2 2 2 0 Haemolysin XhlA DUF607 PF04678.8 gi|336254274|ref|YP_004597381.1| - 4.9 7.0 7.3 33 4.3 5.1 1.8 1 1 0 1 1 1 0 Protein of unknown function, DUF607 Fib_alpha PF08702.5 gi|336254274|ref|YP_004597381.1| - 6 6.9 9.6 1.5 8.9 0.6 2.1 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family Med21 PF11221.3 gi|336254274|ref|YP_004597381.1| - 6.4 6.7 14.4 8.2 6.3 2.6 2.1 2 0 0 2 2 2 0 Subunit 21 of Mediator complex bZIP_Maf PF03131.12 gi|336254274|ref|YP_004597381.1| - 6.5 7.1 9.3 5.1 7.4 0.9 2.3 2 0 0 2 2 2 0 bZIP Maf transcription factor DUF4559 PF15112.1 gi|336254274|ref|YP_004597381.1| - 7.2 5.6 11.9 9.7 5.2 8.2 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4559) DUF1664 PF07889.7 gi|336254274|ref|YP_004597381.1| - 8.7 6.1 9.8 1.5 8.6 1.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) Spc24 PF08286.6 gi|336254274|ref|YP_004597381.1| - 9.3 5.9 19.7 1.9 8.1 2.8 2.2 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 DUF2508 PF10704.4 gi|336254275|ref|YP_004597382.1| - 0.14 12.3 1.0 0.24 11.6 0.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2508) DUF904 PF06005.7 gi|336254275|ref|YP_004597382.1| - 0.23 11.7 1.6 0.27 11.5 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF904) Med9 PF07544.8 gi|336254275|ref|YP_004597382.1| - 3.2 7.5 5.1 0.65 9.7 0.2 1.9 2 0 0 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 PAP2 PF01569.16 gi|336254276|ref|YP_004597383.1| - 4e-15 55.6 5.2 4e-15 55.6 3.6 2.3 2 1 1 3 3 3 1 PAP2 superfamily PAP2_3 PF14378.1 gi|336254276|ref|YP_004597383.1| - 5.8e-13 48.7 8.8 5.8e-13 48.7 6.1 1.7 2 0 0 2 2 2 1 PAP2 superfamily DUF423 PF04241.10 gi|336254276|ref|YP_004597383.1| - 0.0097 15.8 5.3 0.26 11.2 0.1 2.8 3 0 0 3 3 3 2 Protein of unknown function (DUF423) NADH_dh_m_C1 PF15088.1 gi|336254276|ref|YP_004597383.1| - 0.087 12.3 0.0 0.19 11.2 0.0 1.5 1 0 0 1 1 1 0 NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial DUF1212 PF06738.7 gi|336254276|ref|YP_004597383.1| - 0.42 10.0 4.8 2.8 7.3 1.5 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF1212) YfhO PF09586.5 gi|336254276|ref|YP_004597383.1| - 0.74 7.7 11.5 0.18 9.8 4.0 1.9 1 1 1 2 2 2 0 Bacterial membrane protein YfhO Pox_A14 PF05767.7 gi|336254276|ref|YP_004597383.1| - 2.5 8.0 10.2 0.91 9.5 1.0 3.1 2 2 0 2 2 2 0 Poxvirus virion envelope protein A14 Tic20 PF09685.5 gi|336254276|ref|YP_004597383.1| - 7.6 6.5 13.3 0.42 10.6 0.3 3.2 3 0 0 3 3 3 0 Tic20-like protein SBP_bac_5 PF00496.17 gi|336254277|ref|YP_004597384.1| - 2.6e-48 164.7 0.0 8.3e-43 146.6 0.0 2.1 2 0 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 5 Middle Rpr2 PF04032.11 gi|336254278|ref|YP_004597385.1| - 1.3e-17 63.3 0.0 1.5e-17 63.2 0.0 1.0 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain DUF1771 PF08590.5 gi|336254278|ref|YP_004597385.1| - 0.023 14.6 0.6 0.034 14.1 0.4 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1771) Sgf11 PF08209.6 gi|336254278|ref|YP_004597385.1| - 0.092 12.0 0.3 0.21 10.9 0.2 1.6 1 0 0 1 1 1 0 Sgf11 (transcriptional regulation protein) CRS1_YhbY PF01985.16 gi|336254279|ref|YP_004597386.1| - 1.8e-20 72.6 0.1 2e-20 72.5 0.1 1.0 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain MS_channel PF00924.13 gi|336254280|ref|YP_004597387.1| - 1.6e-48 164.7 0.1 1.6e-48 164.7 0.0 1.5 2 0 0 2 2 2 1 Mechanosensitive ion channel DUF2092 PF09865.4 gi|336254281|ref|YP_004597388.1| - 0.00059 18.9 0.0 0.0023 17.0 0.0 1.8 1 1 0 1 1 1 1 Predicted periplasmic protein (DUF2092) MucB_RseB PF03888.9 gi|336254281|ref|YP_004597388.1| - 0.046 12.7 0.1 0.2 10.6 0.0 1.9 2 0 0 2 2 2 0 MucB/RseB family EamA PF00892.15 gi|336254282|ref|YP_004597389.1| - 1e-39 135.4 27.2 1.4e-20 73.6 4.7 2.3 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|336254282|ref|YP_004597389.1| - 3.1e-09 37.0 33.8 4.1e-05 23.7 7.7 3.3 2 1 1 3 3 3 2 Multidrug resistance efflux transporter DUF2270 PF10028.4 gi|336254283|ref|YP_004597390.1| - 1.3e-55 187.7 2.8 1.5e-55 187.5 1.9 1.0 1 0 0 1 1 1 1 Predicted integral membrane protein (DUF2270) Acyl_transf_3 PF01757.17 gi|336254283|ref|YP_004597390.1| - 0.025 13.4 2.5 0.038 12.8 0.1 2.0 2 0 0 2 2 2 0 Acyltransferase family PRT_C PF08372.5 gi|336254283|ref|YP_004597390.1| - 0.083 12.3 0.4 0.16 11.4 0.1 1.6 2 0 0 2 2 2 0 Plant phosphoribosyltransferase C-terminal RseC_MucC PF04246.7 gi|336254283|ref|YP_004597390.1| - 0.28 10.7 3.3 3.9 7.0 0.1 2.1 2 0 0 2 2 2 0 Positive regulator of sigma(E), RseC/MucC Peripla_BP_2 PF01497.13 gi|336254284|ref|YP_004597391.1| - 1.6e-13 50.3 0.0 2.2e-13 49.8 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein TAT_signal PF10518.4 gi|336254284|ref|YP_004597391.1| - 0.17 11.9 3.7 0.31 11.1 2.6 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence SNF PF00209.13 gi|336254285|ref|YP_004597392.1| - 1.2e-50 172.5 21.7 1.8e-25 89.4 5.5 2.1 1 1 1 2 2 2 2 Sodium:neurotransmitter symporter family PsbN PF02468.10 gi|336254285|ref|YP_004597392.1| - 0.81 9.3 3.6 0.93 9.1 0.1 3.1 2 0 0 2 2 2 0 Photosystem II reaction centre N protein (psbN) HTH_IclR PF09339.5 gi|336254286|ref|YP_004597393.1| - 0.00023 20.6 0.1 0.002 17.6 0.0 2.2 2 0 0 2 2 2 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|336254286|ref|YP_004597393.1| - 0.00082 18.9 0.0 0.0018 17.9 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|336254286|ref|YP_004597393.1| - 0.011 15.0 0.0 0.023 14.0 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|336254286|ref|YP_004597393.1| - 0.015 14.9 0.0 0.028 14.1 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.1 gi|336254286|ref|YP_004597393.1| - 0.035 13.9 0.0 0.062 13.1 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix Pro-kuma_activ PF09286.6 gi|336254286|ref|YP_004597393.1| - 0.082 12.9 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 Pro-kumamolisin, activation domain HTH_20 PF12840.2 gi|336254286|ref|YP_004597393.1| - 0.098 12.4 0.1 0.21 11.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Methyltransf_31 PF13847.1 gi|336254287|ref|YP_004597394.1| - 6e-17 61.6 0.0 7.9e-17 61.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|336254287|ref|YP_004597394.1| - 7.2e-16 58.7 0.1 1.4e-15 57.8 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|336254287|ref|YP_004597394.1| - 1.7e-11 44.4 0.0 3.2e-11 43.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|336254287|ref|YP_004597394.1| - 1.8e-11 44.0 0.0 2.8e-11 43.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|336254287|ref|YP_004597394.1| - 1.8e-10 41.1 0.1 2.9e-10 40.4 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|336254287|ref|YP_004597394.1| - 7.7e-09 35.6 0.6 1.7e-08 34.5 0.4 1.6 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|336254287|ref|YP_004597394.1| - 2.3e-07 30.3 0.0 3.9e-07 29.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.1 gi|336254287|ref|YP_004597394.1| - 4.2e-07 30.2 0.2 7.3e-07 29.4 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_4 PF02390.12 gi|336254287|ref|YP_004597394.1| - 1.5e-05 24.1 0.0 2.2e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_3 PF01596.12 gi|336254287|ref|YP_004597394.1| - 4.2e-05 22.6 0.0 6.5e-05 22.0 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase CMAS PF02353.15 gi|336254287|ref|YP_004597394.1| - 6e-05 22.2 0.0 8.1e-05 21.8 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase GCD14 PF08704.5 gi|336254287|ref|YP_004597394.1| - 6.6e-05 22.5 0.1 9.4e-05 22.0 0.1 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit PrmA PF06325.8 gi|336254287|ref|YP_004597394.1| - 0.00026 20.2 0.1 0.00039 19.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_24 PF13578.1 gi|336254287|ref|YP_004597394.1| - 0.00046 20.9 0.8 0.0012 19.6 0.5 1.8 2 0 0 2 2 1 1 Methyltransferase domain FmrO PF07091.6 gi|336254287|ref|YP_004597394.1| - 0.00057 18.9 0.0 0.00085 18.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA methyltransferase (FmrO) PCMT PF01135.14 gi|336254287|ref|YP_004597394.1| - 0.00096 18.7 0.0 0.0016 18.0 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Ubie_methyltran PF01209.13 gi|336254287|ref|YP_004597394.1| - 0.0015 17.6 0.0 0.0025 16.9 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_32 PF13679.1 gi|336254287|ref|YP_004597394.1| - 0.0052 16.4 0.0 0.0071 16.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|336254287|ref|YP_004597394.1| - 0.0098 15.4 0.0 0.015 14.8 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 MarR_2 PF12802.2 gi|336254287|ref|YP_004597394.1| - 0.093 12.4 0.0 0.93 9.2 0.0 2.2 2 0 0 2 2 2 0 MarR family HTH_20 PF12840.2 gi|336254287|ref|YP_004597394.1| - 0.11 12.2 0.0 0.33 10.8 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain Methyltransf_2 PF00891.13 gi|336254287|ref|YP_004597394.1| - 0.14 11.3 0.1 0.6 9.2 0.1 2.0 2 1 0 2 2 2 0 O-methyltransferase PT-VENN PF04829.8 gi|336254287|ref|YP_004597394.1| - 1.9 8.0 4.2 0.4 10.2 0.3 1.8 2 0 0 2 2 1 0 Pre-toxin domain with VENN motif RmuC PF02646.11 gi|336254288|ref|YP_004597395.1| - 0.00025 19.9 1.0 0.00029 19.7 0.7 1.1 1 0 0 1 1 1 1 RmuC family AAA_13 PF13166.1 gi|336254288|ref|YP_004597395.1| - 0.0031 16.0 1.8 0.0033 15.9 1.2 1.1 1 0 0 1 1 1 1 AAA domain Nha1_C PF08619.5 gi|336254288|ref|YP_004597395.1| - 0.0034 16.7 3.7 0.0037 16.6 2.6 1.0 1 0 0 1 1 1 1 Alkali metal cation/H+ antiporter Nha1 C terminus Tropomyosin PF00261.15 gi|336254288|ref|YP_004597395.1| - 0.005 15.9 2.2 0.005 15.9 1.5 1.9 1 1 1 2 2 2 1 Tropomyosin HAP1_N PF04849.8 gi|336254288|ref|YP_004597395.1| - 0.0087 15.0 1.3 0.0099 14.8 0.9 1.2 1 0 0 1 1 1 1 HAP1 N-terminal conserved region Arfaptin PF06456.8 gi|336254288|ref|YP_004597395.1| - 0.0091 15.3 0.1 0.01 15.1 0.1 1.1 1 0 0 1 1 1 1 Arfaptin-like domain DUF2730 PF10805.3 gi|336254288|ref|YP_004597395.1| - 0.0093 15.6 0.6 0.014 15.1 0.4 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2730) FbpA PF05833.6 gi|336254288|ref|YP_004597395.1| - 0.015 13.8 1.2 0.016 13.7 0.8 1.2 1 0 0 1 1 1 0 Fibronectin-binding protein A N-terminus (FbpA) PspB PF06667.7 gi|336254288|ref|YP_004597395.1| - 0.029 14.2 0.3 0.065 13.1 0.2 1.6 1 0 0 1 1 1 0 Phage shock protein B DUF1664 PF07889.7 gi|336254288|ref|YP_004597395.1| - 0.051 13.3 0.7 0.07 12.9 0.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) DUF1465 PF07323.7 gi|336254288|ref|YP_004597395.1| - 0.057 12.9 1.4 0.06 12.9 0.1 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1465) NPV_P10 PF05531.7 gi|336254288|ref|YP_004597395.1| - 0.07 13.3 0.7 0.09 13.0 0.5 1.4 1 0 0 1 1 1 0 Nucleopolyhedrovirus P10 protein DUF972 PF06156.8 gi|336254288|ref|YP_004597395.1| - 0.09 13.1 3.5 0.12 12.7 2.4 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF972) Atg14 PF10186.4 gi|336254288|ref|YP_004597395.1| - 0.094 11.6 0.7 0.12 11.3 0.5 1.1 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 GP41 PF00517.12 gi|336254288|ref|YP_004597395.1| - 0.098 12.2 0.9 0.12 11.8 0.6 1.1 1 0 0 1 1 1 0 Retroviral envelope protein Tho2 PF11262.3 gi|336254288|ref|YP_004597395.1| - 0.16 10.9 0.4 0.19 10.7 0.3 1.1 1 0 0 1 1 1 0 Transcription factor/nuclear export subunit protein 2 Tropomyosin_1 PF12718.2 gi|336254288|ref|YP_004597395.1| - 0.18 11.6 8.0 0.56 10.0 5.6 1.8 1 1 0 1 1 1 0 Tropomyosin like bZIP_2 PF07716.10 gi|336254288|ref|YP_004597395.1| - 0.21 11.4 4.4 0.14 12.0 1.5 1.7 2 0 0 2 2 2 0 Basic region leucine zipper V_ATPase_I PF01496.14 gi|336254288|ref|YP_004597395.1| - 0.24 9.2 1.6 0.26 9.1 1.1 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Striatin PF08232.7 gi|336254288|ref|YP_004597395.1| - 0.26 11.5 2.8 0.3 11.3 2.0 1.1 1 0 0 1 1 1 0 Striatin family IncA PF04156.9 gi|336254288|ref|YP_004597395.1| - 0.31 10.5 4.2 0.38 10.3 2.9 1.2 1 0 0 1 1 1 0 IncA protein DivIVA PF05103.8 gi|336254288|ref|YP_004597395.1| - 0.34 10.9 5.7 0.47 10.4 3.9 1.2 1 0 0 1 1 1 0 DivIVA protein DivIC PF04977.10 gi|336254288|ref|YP_004597395.1| - 0.34 10.4 5.9 0.055 12.9 1.4 1.7 2 0 0 2 2 2 0 Septum formation initiator Spc24 PF08286.6 gi|336254288|ref|YP_004597395.1| - 0.38 10.4 6.1 0.72 9.5 4.2 1.6 1 1 0 1 1 1 0 Spc24 subunit of Ndc80 SlyX PF04102.7 gi|336254288|ref|YP_004597395.1| - 0.48 10.8 8.7 0.34 11.3 3.6 2.2 1 1 1 2 2 2 0 SlyX Nop25 PF09805.4 gi|336254288|ref|YP_004597395.1| - 0.61 10.1 5.7 0.86 9.6 3.9 1.3 1 0 0 1 1 1 0 Nucleolar protein 12 (25kDa) PTRF_SDPR PF15237.1 gi|336254288|ref|YP_004597395.1| - 1 8.7 4.2 0.25 10.7 0.4 1.6 1 1 1 2 2 2 0 PTRF/SDPR family Seryl_tRNA_N PF02403.17 gi|336254288|ref|YP_004597395.1| - 1.9 8.5 6.0 0.31 11.0 0.8 1.9 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain DUF2802 PF10975.3 gi|336254288|ref|YP_004597395.1| - 5.1 6.9 7.8 25 4.7 5.4 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF2802) PGA2 PF07543.7 gi|336254288|ref|YP_004597395.1| - 5.8 6.7 7.7 16 5.2 5.3 1.8 1 1 0 1 1 1 0 Protein trafficking PGA2 DUF4140 PF13600.1 gi|336254288|ref|YP_004597395.1| - 6 7.3 6.7 1.2 9.6 0.9 2.0 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) PALP PF00291.20 gi|336254289|ref|YP_004597396.1| - 1.6e-56 191.7 0.9 1.8e-56 191.6 0.6 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme EGF PF00008.22 gi|336254290|ref|YP_004597397.1| - 0.022 14.7 0.8 0.031 14.2 0.6 1.4 1 1 0 1 1 1 0 EGF-like domain CoA_binding_2 PF13380.1 gi|336254291|ref|YP_004597398.1| - 1.3e-36 125.2 0.2 1.6e-36 125.0 0.1 1.1 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.14 gi|336254291|ref|YP_004597398.1| - 5.6e-09 36.3 0.0 9.9e-09 35.6 0.0 1.3 1 0 0 1 1 1 1 CoA binding domain TusA PF01206.12 gi|336254291|ref|YP_004597398.1| - 0.06 12.9 0.0 0.11 12.1 0.0 1.5 1 0 0 1 1 1 0 Sulfurtransferase TusA DUF521 PF04412.8 gi|336254291|ref|YP_004597398.1| - 0.13 10.8 0.0 0.14 10.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF521) KaiC PF06745.8 gi|336254292|ref|YP_004597399.1| - 5e-09 35.6 0.0 6.5e-09 35.2 0.0 1.1 1 0 0 1 1 1 1 KaiC DUF835 PF05763.7 gi|336254292|ref|YP_004597399.1| - 0.00013 21.5 0.0 0.00024 20.6 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF835) DUF1477 PF07346.6 gi|336254292|ref|YP_004597399.1| - 0.029 14.3 0.1 0.065 13.2 0.1 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1477) UbiA PF01040.13 gi|336254293|ref|YP_004597400.1| - 1.4e-41 142.4 22.5 1.7e-41 142.1 15.6 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family HTH_20 PF12840.2 gi|336254295|ref|YP_004597402.1| - 2.2e-06 27.3 0.0 3.7e-06 26.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|336254295|ref|YP_004597402.1| - 4.4e-06 26.1 0.0 6.7e-06 25.5 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.7 gi|336254295|ref|YP_004597402.1| - 0.0011 18.5 0.5 0.002 17.7 0.1 1.6 2 0 0 2 2 2 1 HTH domain HTH_24 PF13412.1 gi|336254295|ref|YP_004597402.1| - 0.0013 18.0 0.1 0.0029 16.9 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_23 PF13384.1 gi|336254295|ref|YP_004597402.1| - 0.0035 16.9 0.1 0.011 15.3 0.1 1.7 1 1 1 2 2 2 1 Homeodomain-like domain HTH_28 PF13518.1 gi|336254295|ref|YP_004597402.1| - 0.0044 16.9 0.1 0.0087 16.0 0.0 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|336254295|ref|YP_004597402.1| - 0.0057 16.3 0.0 0.0099 15.5 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|336254295|ref|YP_004597402.1| - 0.0086 15.7 0.0 0.013 15.1 0.0 1.3 1 0 0 1 1 1 1 MarR family FUR PF01475.14 gi|336254295|ref|YP_004597402.1| - 0.036 13.9 0.0 0.048 13.5 0.0 1.3 1 0 0 1 1 1 0 Ferric uptake regulator family HTH_17 PF12728.2 gi|336254295|ref|YP_004597402.1| - 0.036 14.3 0.0 0.063 13.5 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain TetR_N PF00440.18 gi|336254295|ref|YP_004597402.1| - 0.049 13.2 0.0 0.085 12.5 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_Crp_2 PF13545.1 gi|336254295|ref|YP_004597402.1| - 0.062 13.0 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_5 PF01022.15 gi|336254295|ref|YP_004597402.1| - 0.066 12.8 0.0 0.099 12.3 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|336254295|ref|YP_004597402.1| - 0.095 12.4 0.0 0.3 10.8 0.0 1.7 2 0 0 2 2 2 0 MarR family UPF0122 PF04297.9 gi|336254295|ref|YP_004597402.1| - 0.1 12.6 0.0 0.17 11.8 0.0 1.4 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_27 PF13463.1 gi|336254295|ref|YP_004597402.1| - 0.11 12.8 0.0 0.3 11.4 0.0 1.7 2 0 0 2 2 2 0 Winged helix DNA-binding domain Phage_AlpA PF05930.7 gi|336254295|ref|YP_004597402.1| - 0.11 12.2 0.0 0.18 11.5 0.0 1.3 1 0 0 1 1 1 0 Prophage CP4-57 regulatory protein (AlpA) HATPase_c_3 PF13589.1 gi|336254297|ref|YP_004597404.1| - 2.4e-20 72.5 0.1 6.6e-20 71.1 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.21 gi|336254297|ref|YP_004597404.1| - 4.9e-05 23.0 0.0 0.00014 21.5 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PaRep2b PF07775.6 gi|336254297|ref|YP_004597404.1| - 0.0011 17.2 0.0 0.0018 16.5 0.0 1.2 1 0 0 1 1 1 1 PaRep2b protein Phage_integrase PF00589.17 gi|336254302|ref|YP_004597409.1| - 6.9e-08 32.3 0.0 9.3e-08 31.9 0.0 1.1 1 0 0 1 1 1 1 Phage integrase family Integrase_1 PF12835.2 gi|336254302|ref|YP_004597409.1| - 0.0014 18.3 0.0 0.0022 17.8 0.0 1.2 1 0 0 1 1 1 1 Integrase Mrr_cat PF04471.7 gi|336254303|ref|YP_004597410.1| - 6.2e-07 29.2 0.2 2.2e-06 27.4 0.0 2.0 2 0 0 2 2 2 1 Restriction endonuclease HTH_9 PF08221.6 gi|336254303|ref|YP_004597410.1| - 0.1 12.5 0.0 0.49 10.2 0.0 2.1 2 0 0 2 2 2 0 RNA polymerase III subunit RPC82 helix-turn-helix domain N6_N4_Mtase PF01555.13 gi|336254304|ref|YP_004597411.1| - 6.6e-35 120.6 0.0 8.3e-35 120.3 0.0 1.1 1 0 0 1 1 1 1 DNA methylase Methyltransf_26 PF13659.1 gi|336254304|ref|YP_004597411.1| - 1.7e-07 31.2 0.0 0.00021 21.3 0.0 2.3 2 0 0 2 2 2 2 Methyltransferase domain PapJ PF14855.1 gi|336254305|ref|YP_004597412.1| - 0.024 14.0 0.1 0.34 10.3 0.0 2.0 1 1 1 2 2 2 0 Pilus-assembly fibrillin subunit, chaperone DUF3618 PF12277.3 gi|336254305|ref|YP_004597412.1| - 0.046 13.7 0.7 0.12 12.4 0.2 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF3618) HTH_IclR PF09339.5 gi|336254305|ref|YP_004597412.1| - 0.057 13.0 0.0 0.12 11.9 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|336254307|ref|YP_004597414.1| - 1.3e-06 27.6 0.0 3.4e-06 26.3 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_23 PF13384.1 gi|336254307|ref|YP_004597414.1| - 1.3e-05 24.6 0.0 4e-05 23.1 0.0 1.8 1 0 0 1 1 1 1 Homeodomain-like domain HTH_29 PF13551.1 gi|336254307|ref|YP_004597414.1| - 5.7e-05 23.2 0.1 0.00016 21.8 0.1 1.7 1 0 0 1 1 1 1 Winged helix-turn helix HTH_28 PF13518.1 gi|336254307|ref|YP_004597414.1| - 7.3e-05 22.6 0.0 0.00017 21.4 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_45 PF14947.1 gi|336254307|ref|YP_004597414.1| - 0.0017 18.1 0.0 0.0036 17.0 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_11 PF08279.7 gi|336254307|ref|YP_004597414.1| - 0.0087 15.6 0.0 0.017 14.7 0.0 1.4 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.2 gi|336254307|ref|YP_004597414.1| - 0.013 15.1 0.0 0.035 13.7 0.0 1.7 1 0 0 1 1 1 0 MarR family TrmB PF01978.14 gi|336254307|ref|YP_004597414.1| - 0.019 14.6 0.0 0.038 13.6 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|336254307|ref|YP_004597414.1| - 0.062 13.1 0.0 0.14 11.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain FaeA PF04703.7 gi|336254307|ref|YP_004597414.1| - 0.11 12.7 0.1 0.49 10.5 0.0 2.1 2 0 0 2 2 2 0 FaeA-like protein Phage_integrase PF00589.17 gi|336254308|ref|YP_004597415.1| - 2.4e-09 37.0 0.0 1.5e-08 34.5 0.0 2.1 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.12 gi|336254308|ref|YP_004597415.1| - 0.0078 16.3 0.8 0.35 11.0 0.0 3.2 4 0 0 4 4 4 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.1 gi|336254308|ref|YP_004597415.1| - 0.025 14.9 1.2 28 5.1 0.0 4.0 4 1 1 5 5 5 0 Phage integrase, N-terminal SAM-like domain Phage_integrase PF00589.17 gi|336254309|ref|YP_004597416.1| - 1.6e-07 31.1 0.0 1.9e-06 27.6 0.0 2.3 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.12 gi|336254309|ref|YP_004597416.1| - 1.2e-06 28.5 0.5 1.6e-05 24.9 0.0 2.6 1 1 1 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.1 gi|336254309|ref|YP_004597416.1| - 9.3e-06 25.8 0.4 7e-05 23.0 0.0 2.6 2 1 1 3 3 3 2 Phage integrase, N-terminal SAM-like domain Usp PF00582.21 gi|336254312|ref|YP_004597419.1| - 1.1e-33 116.4 2.8 1.2e-33 116.2 2.0 1.0 1 0 0 1 1 1 1 Universal stress protein family ParA PF10609.4 gi|336254312|ref|YP_004597419.1| - 0.086 12.7 0.0 0.14 12.0 0.0 1.4 1 0 0 1 1 1 0 ParA/MinD ATPase like DUF4203 PF13886.1 gi|336254313|ref|YP_004597420.1| - 0.021 14.2 0.5 0.024 14.0 0.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4203) Rick_17kDa_Anti PF05433.10 gi|336254315|ref|YP_004597422.1| - 0.22 11.2 1.8 0.47 10.1 1.3 1.4 1 0 0 1 1 1 0 Glycine zipper 2TM domain Hid1 PF12722.2 gi|336254316|ref|YP_004597423.1| - 1.1 6.8 11.7 1.1 6.8 8.1 1.1 1 0 0 1 1 1 0 High-temperature-induced dauer-formation protein CENP-T PF15511.1 gi|336254316|ref|YP_004597423.1| - 5.6 6.1 40.0 6.6 5.8 27.7 1.2 1 0 0 1 1 1 0 Centromere kinetochore component CENP-T AvrE PF11725.3 gi|336254317|ref|YP_004597424.1| - 2.7 4.8 18.9 3.7 4.4 13.1 1.1 1 0 0 1 1 1 0 Pathogenicity factor PQQ_2 PF13360.1 gi|336254318|ref|YP_004597425.1| - 7.6e-15 55.0 7.8 2.7e-09 36.8 1.6 2.6 1 1 1 2 2 2 2 PQQ-like domain PQQ PF01011.16 gi|336254318|ref|YP_004597425.1| - 3.2e-10 39.0 6.3 8.3e-06 25.0 0.1 5.4 6 0 0 6 6 6 2 PQQ enzyme repeat PQQ_3 PF13570.1 gi|336254318|ref|YP_004597425.1| - 1.2e-06 28.5 18.4 0.2 11.9 0.0 6.9 8 0 0 8 8 8 4 PQQ-like domain DUF3209 PF11483.3 gi|336254319|ref|YP_004597426.1| - 1.1e-58 196.9 5.2 1.2e-58 196.7 3.6 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3209) Glyoxalase_2 PF12681.2 gi|336254319|ref|YP_004597426.1| - 0.14 12.7 0.2 0.17 12.5 0.1 1.3 1 1 0 1 1 1 0 Glyoxalase-like domain CbiX PF01903.12 gi|336254320|ref|YP_004597427.1| - 9.9e-44 147.7 0.0 1.8e-20 73.0 0.1 2.5 2 0 0 2 2 2 2 CbiX 2Fe-2S_thioredx PF01257.14 gi|336254320|ref|YP_004597427.1| - 1.1e-08 34.7 0.1 1.8e-08 34.1 0.1 1.3 1 0 0 1 1 1 1 Thioredoxin-like [2Fe-2S] ferredoxin CbiK PF06180.6 gi|336254320|ref|YP_004597427.1| - 0.00011 21.3 0.0 0.14 11.2 0.0 2.1 2 0 0 2 2 2 2 Cobalt chelatase (CbiK) Suc_Fer-like PF06999.7 gi|336254320|ref|YP_004597427.1| - 0.00068 19.7 0.0 0.0015 18.5 0.0 1.7 2 0 0 2 2 2 1 Sucrase/ferredoxin-like TPP_enzyme_M PF00205.17 gi|336254320|ref|YP_004597427.1| - 0.04 13.6 0.0 1.4 8.7 0.0 2.3 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, central domain LAGLIDADG_3 PF14528.1 gi|336254321|ref|YP_004597428.1| - 0.018 15.2 0.0 0.095 12.9 0.0 2.0 2 0 0 2 2 2 0 LAGLIDADG-like domain Fer4_15 PF13459.1 gi|336254322|ref|YP_004597429.1| - 2.8e-13 50.2 7.6 4.3e-13 49.6 5.3 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_19 PF06902.6 gi|336254322|ref|YP_004597429.1| - 0.00069 19.3 0.4 0.22 11.3 0.1 2.1 1 1 1 2 2 2 2 Divergent 4Fe-4S mono-cluster Fer4_13 PF13370.1 gi|336254322|ref|YP_004597429.1| - 0.0031 17.8 5.8 0.006 16.9 4.0 1.6 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_6 PF12837.2 gi|336254322|ref|YP_004597429.1| - 4.1 7.4 8.4 11 6.0 0.1 3.4 4 0 0 4 4 4 0 4Fe-4S binding domain TP_methylase PF00590.15 gi|336254323|ref|YP_004597430.1| - 1.6e-37 129.2 0.2 2e-37 128.9 0.1 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases TP_methylase PF00590.15 gi|336254324|ref|YP_004597431.1| - 2.5e-41 141.6 0.1 3e-41 141.4 0.1 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases CbiG_N PF11760.3 gi|336254325|ref|YP_004597432.1| - 1.3e-29 101.7 0.0 4.3e-29 100.0 0.0 1.9 2 0 0 2 2 2 1 Cobalamin synthesis G N-terminal CbiG_C PF01890.11 gi|336254325|ref|YP_004597432.1| - 3.1e-27 95.2 0.0 6.6e-27 94.1 0.0 1.6 1 0 0 1 1 1 1 Cobalamin synthesis G C-terminus AIRS PF00586.19 gi|336254325|ref|YP_004597432.1| - 0.029 14.5 0.1 0.08 13.1 0.1 1.7 1 0 0 1 1 1 0 AIR synthase related protein, N-terminal domain PQQ_2 PF13360.1 gi|336254326|ref|YP_004597433.1| - 5.2e-61 206.1 12.2 4e-25 88.6 0.1 3.9 1 1 3 4 4 4 4 PQQ-like domain PQQ_3 PF13570.1 gi|336254326|ref|YP_004597433.1| - 1.7e-56 187.0 38.8 6.2e-12 45.3 0.3 9.3 9 0 0 9 9 9 8 PQQ-like domain PQQ PF01011.16 gi|336254326|ref|YP_004597433.1| - 2.7e-45 149.6 10.2 1.7e-08 33.5 0.0 8.5 8 0 0 8 8 8 8 PQQ enzyme repeat DUF4394 PF14339.1 gi|336254326|ref|YP_004597433.1| - 0.0011 18.2 1.3 10 5.3 0.1 5.0 2 2 3 5 5 5 2 Domain of unknown function (DUF4394) PsbP PF01789.11 gi|336254326|ref|YP_004597433.1| - 0.097 12.1 0.6 63 2.9 0.0 4.3 5 0 0 5 5 5 0 PsbP DUF2976 PF11190.3 gi|336254329|ref|YP_004597436.1| - 0.05 13.1 0.0 0.081 12.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2976) T2SF PF00482.18 gi|336254331|ref|YP_004597438.1| - 0.0095 15.8 5.7 0.18 11.7 0.5 3.8 2 2 0 2 2 2 2 Type II secretion system (T2SS), protein F CHD5 PF04420.9 gi|336254331|ref|YP_004597438.1| - 0.14 11.8 0.3 0.26 10.9 0.2 1.4 1 0 0 1 1 1 0 CHD5-like protein T2SE PF00437.15 gi|336254332|ref|YP_004597439.1| - 1.6e-35 122.3 0.0 2.5e-35 121.7 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein ABC_tran PF00005.22 gi|336254332|ref|YP_004597439.1| - 0.00025 21.3 0.0 0.00044 20.5 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_29 PF13555.1 gi|336254332|ref|YP_004597439.1| - 0.017 14.6 0.1 0.046 13.2 0.1 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain FtsK_SpoIIIE PF01580.13 gi|336254332|ref|YP_004597439.1| - 0.018 14.5 0.0 0.04 13.3 0.0 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_25 PF13481.1 gi|336254332|ref|YP_004597439.1| - 0.02 14.3 0.2 0.1 11.9 0.1 2.3 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.7 gi|336254332|ref|YP_004597439.1| - 0.044 12.8 0.0 0.085 11.9 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin TrwB_AAD_bind PF10412.4 gi|336254332|ref|YP_004597439.1| - 0.049 12.2 0.0 0.076 11.6 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_14 PF13173.1 gi|336254332|ref|YP_004597439.1| - 0.067 13.0 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain cobW PF02492.14 gi|336254332|ref|YP_004597439.1| - 0.094 12.1 0.0 0.17 11.3 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_24 PF13479.1 gi|336254332|ref|YP_004597439.1| - 0.15 11.6 0.0 0.26 10.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain Myosin_tail_1 PF01576.14 gi|336254334|ref|YP_004597441.1| - 0.00093 17.0 2.9 0.0011 16.8 2.0 1.1 1 0 0 1 1 1 1 Myosin tail Tropomyosin_1 PF12718.2 gi|336254334|ref|YP_004597441.1| - 0.002 17.9 1.7 0.0035 17.2 0.8 1.5 1 1 0 1 1 1 1 Tropomyosin like HSBP1 PF06825.7 gi|336254334|ref|YP_004597441.1| - 0.0045 16.5 0.8 0.51 9.9 0.0 2.8 3 0 0 3 3 3 1 Heat shock factor binding protein 1 Reo_sigmaC PF04582.7 gi|336254334|ref|YP_004597441.1| - 0.0053 15.9 1.7 0.058 12.5 1.4 1.8 1 1 1 2 2 2 2 Reovirus sigma C capsid protein Lebercilin PF15619.1 gi|336254334|ref|YP_004597441.1| - 0.0089 15.4 0.3 0.013 14.9 0.2 1.2 1 0 0 1 1 1 1 Ciliary protein causing Leber congenital amaurosis disease Cep57_CLD_2 PF14197.1 gi|336254334|ref|YP_004597441.1| - 0.013 15.4 7.0 0.013 15.4 3.2 2.1 2 1 0 2 2 2 0 Centrosome localisation domain of PPC89 SlyX PF04102.7 gi|336254334|ref|YP_004597441.1| - 0.017 15.4 3.3 0.76 10.1 0.7 3.0 1 1 1 2 2 2 0 SlyX AAA_27 PF13514.1 gi|336254334|ref|YP_004597441.1| - 0.018 12.7 5.0 0.023 12.4 3.5 1.1 1 0 0 1 1 1 0 AAA domain TMF_DNA_bd PF12329.3 gi|336254334|ref|YP_004597441.1| - 0.019 14.7 2.3 1.5 8.6 0.1 2.7 2 1 1 3 3 3 0 TATA element modulatory factor 1 DNA binding IncA PF04156.9 gi|336254334|ref|YP_004597441.1| - 0.021 14.3 0.4 0.032 13.8 0.3 1.3 1 0 0 1 1 1 0 IncA protein Spectrin PF00435.16 gi|336254334|ref|YP_004597441.1| - 0.023 14.9 0.7 0.058 13.6 0.5 1.7 1 1 0 1 1 1 0 Spectrin repeat FlaC_arch PF05377.6 gi|336254334|ref|YP_004597441.1| - 0.027 14.3 0.2 26 4.8 0.0 3.2 1 1 1 3 3 3 0 Flagella accessory protein C (FlaC) BLOC1_2 PF10046.4 gi|336254334|ref|YP_004597441.1| - 0.028 14.5 1.1 1.2 9.2 0.0 2.7 1 1 2 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 PspA_IM30 PF04012.7 gi|336254334|ref|YP_004597441.1| - 0.036 13.4 6.1 1.2 8.4 4.2 2.2 1 1 0 1 1 1 0 PspA/IM30 family Dynamitin PF04912.9 gi|336254334|ref|YP_004597441.1| - 0.04 12.7 3.1 0.45 9.2 0.4 2.3 1 1 1 2 2 2 0 Dynamitin DUF745 PF05335.8 gi|336254334|ref|YP_004597441.1| - 0.04 13.4 0.8 0.065 12.7 0.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF745) NPV_P10 PF05531.7 gi|336254334|ref|YP_004597441.1| - 0.05 13.8 3.1 0.96 9.7 0.4 2.8 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein XhlA PF10779.4 gi|336254334|ref|YP_004597441.1| - 0.051 13.4 0.6 0.77 9.7 0.0 2.6 3 0 0 3 3 3 0 Haemolysin XhlA Lzipper-MIP1 PF14389.1 gi|336254334|ref|YP_004597441.1| - 0.063 13.3 2.9 2.2 8.4 0.5 2.8 1 1 2 3 3 3 0 Leucine-zipper of ternary complex factor MIP1 TMF_TATA_bd PF12325.3 gi|336254334|ref|YP_004597441.1| - 0.065 12.9 1.8 5.1 6.8 0.0 2.3 1 1 0 2 2 2 0 TATA element modulatory factor 1 TATA binding Cortex-I_coil PF09304.5 gi|336254334|ref|YP_004597441.1| - 0.078 13.0 2.3 0.81 9.7 0.3 2.1 1 1 1 2 2 2 0 Cortexillin I, coiled coil Tropomyosin PF00261.15 gi|336254334|ref|YP_004597441.1| - 0.079 12.0 9.8 1.1 8.3 6.8 2.4 1 1 0 1 1 1 0 Tropomyosin Baculo_PEP_C PF04513.7 gi|336254334|ref|YP_004597441.1| - 0.086 12.6 0.1 0.35 10.7 0.1 1.7 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF904 PF06005.7 gi|336254334|ref|YP_004597441.1| - 0.09 13.0 0.3 1.3 9.4 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF904) Prefoldin_2 PF01920.15 gi|336254334|ref|YP_004597441.1| - 0.09 12.5 0.8 10 5.9 0.0 2.6 1 1 1 2 2 2 0 Prefoldin subunit DUF1515 PF07439.6 gi|336254334|ref|YP_004597441.1| - 0.11 12.3 1.1 0.29 10.9 0.5 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF1515) DivIC PF04977.10 gi|336254334|ref|YP_004597441.1| - 0.12 11.9 1.8 9.2 5.8 0.1 2.3 1 1 1 2 2 2 0 Septum formation initiator Laminin_I PF06008.9 gi|336254334|ref|YP_004597441.1| - 0.12 11.7 1.3 0.16 11.2 0.9 1.2 1 0 0 1 1 1 0 Laminin Domain I DUF2205 PF10224.4 gi|336254334|ref|YP_004597441.1| - 0.13 11.8 1.7 0.32 10.6 0.1 2.2 1 1 2 3 3 3 0 Predicted coiled-coil protein (DUF2205) Fmp27_WPPW PF10359.4 gi|336254334|ref|YP_004597441.1| - 0.14 10.5 0.0 0.17 10.2 0.0 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain CENP-F_leu_zip PF10473.4 gi|336254334|ref|YP_004597441.1| - 0.15 11.9 0.8 0.3 10.9 0.3 1.6 1 1 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Not3 PF04065.10 gi|336254334|ref|YP_004597441.1| - 0.18 11.0 0.3 6.9 5.8 0.1 2.0 1 1 1 2 2 2 0 Not1 N-terminal domain, CCR4-Not complex component HOOK PF05622.7 gi|336254334|ref|YP_004597441.1| - 0.27 9.0 1.4 0.33 8.7 1.0 1.0 1 0 0 1 1 1 0 HOOK protein Tektin PF03148.9 gi|336254334|ref|YP_004597441.1| - 0.31 9.5 4.6 0.46 8.9 0.5 2.0 1 1 1 2 2 2 0 Tektin family Fez1 PF06818.10 gi|336254334|ref|YP_004597441.1| - 0.35 10.8 2.7 0.61 10.0 1.8 1.4 1 1 0 1 1 1 0 Fez1 ALIX_LYPXL_bnd PF13949.1 gi|336254334|ref|YP_004597441.1| - 0.38 9.6 2.0 0.67 8.8 0.4 1.7 1 1 1 2 2 2 0 ALIX V-shaped domain binding to HIV Cast PF10174.4 gi|336254334|ref|YP_004597441.1| - 0.51 8.3 5.8 0.64 7.9 4.0 1.1 1 0 0 1 1 1 0 RIM-binding protein of the cytomatrix active zone PspB PF06667.7 gi|336254334|ref|YP_004597441.1| - 1.4 8.8 8.5 25 4.8 0.3 3.4 1 1 2 3 3 3 0 Phage shock protein B FUSC PF04632.7 gi|336254334|ref|YP_004597441.1| - 1.9 6.7 4.3 2.5 6.4 3.0 1.2 1 0 0 1 1 1 0 Fusaric acid resistance protein family DUF4164 PF13747.1 gi|336254334|ref|YP_004597441.1| - 2.7 8.1 10.4 1 9.5 2.2 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4164) CENP-Q PF13094.1 gi|336254334|ref|YP_004597441.1| - 4.9 7.1 5.5 12 5.8 0.1 2.3 1 1 1 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit AAA_10 PF12846.2 gi|336254335|ref|YP_004597442.1| - 5.2e-16 58.9 0.0 1.4e-09 37.8 0.0 2.1 1 1 0 2 2 2 2 AAA-like domain FtsK_SpoIIIE PF01580.13 gi|336254335|ref|YP_004597442.1| - 1.1e-06 28.2 0.1 0.00062 19.3 0.0 2.4 2 0 0 2 2 2 2 FtsK/SpoIIIE family DUF87 PF01935.12 gi|336254335|ref|YP_004597442.1| - 5.3e-06 26.4 0.0 2.5e-05 24.2 0.0 2.0 1 1 0 1 1 1 1 Domain of unknown function DUF87 DUF853 PF05872.7 gi|336254335|ref|YP_004597442.1| - 4.5e-05 21.9 0.3 0.023 13.0 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) Zot PF05707.7 gi|336254335|ref|YP_004597442.1| - 0.00057 19.3 0.0 0.1 12.0 0.0 2.7 2 1 1 3 3 3 1 Zonular occludens toxin (Zot) AAA_22 PF13401.1 gi|336254335|ref|YP_004597442.1| - 0.0013 18.8 0.0 3.1 7.9 0.0 3.0 1 1 2 3 3 3 2 AAA domain TrwB_AAD_bind PF10412.4 gi|336254335|ref|YP_004597442.1| - 0.003 16.2 0.0 0.41 9.2 0.0 2.1 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain AAA PF00004.24 gi|336254335|ref|YP_004597442.1| - 0.0048 17.0 0.0 3.6 7.8 0.1 2.7 3 0 0 3 3 3 2 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|336254335|ref|YP_004597442.1| - 0.009 16.0 3.9 0.1 12.5 0.0 2.7 2 1 0 2 2 2 1 AAA ATPase domain YtkA PF13115.1 gi|336254336|ref|YP_004597443.1| - 0.02 15.2 2.7 0.041 14.2 1.9 1.6 1 1 0 1 1 1 0 YtkA-like ISK_Channel PF02060.10 gi|336254336|ref|YP_004597443.1| - 0.1 12.1 0.0 0.18 11.3 0.0 1.6 1 1 0 1 1 1 0 Slow voltage-gated potassium channel Head_binding PF09008.5 gi|336254336|ref|YP_004597443.1| - 0.1 12.6 0.0 0.15 12.0 0.0 1.2 1 0 0 1 1 1 0 Head binding CarboxypepD_reg PF13620.1 gi|336254336|ref|YP_004597443.1| - 0.11 12.5 2.3 0.14 12.2 0.7 1.8 2 0 0 2 2 2 0 Carboxypeptidase regulatory-like domain FlgD_ig PF13860.1 gi|336254336|ref|YP_004597443.1| - 0.13 12.0 3.5 1.7 8.4 2.2 2.3 1 1 0 1 1 1 0 FlgD Ig-like domain PPC PF04151.10 gi|336254336|ref|YP_004597443.1| - 0.57 11.1 4.0 1.8 9.5 2.8 1.9 1 1 0 1 1 1 0 Bacterial pre-peptidase C-terminal domain ABC2_membrane_3 PF12698.2 gi|336254337|ref|YP_004597444.1| - 2e-13 50.0 0.0 3.1e-13 49.4 0.0 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|336254337|ref|YP_004597444.1| - 1.3e-08 34.0 0.7 2.5e-08 33.1 0.2 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|336254337|ref|YP_004597444.1| - 4.1e-05 22.8 0.6 0.00012 21.2 0.4 2.0 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|336254337|ref|YP_004597444.1| - 1.4 8.1 6.5 0.073 12.3 0.7 1.6 2 0 0 2 2 2 0 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|336254338|ref|YP_004597445.1| - 8.7e-06 24.7 3.9 8.7e-06 24.7 2.7 3.7 3 1 0 3 3 3 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|336254338|ref|YP_004597445.1| - 0.0021 17.1 18.1 0.0021 17.1 12.5 2.4 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC_tran PF00005.22 gi|336254339|ref|YP_004597446.1| - 4.7e-29 101.4 0.0 1.3e-28 99.9 0.0 1.7 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|336254339|ref|YP_004597446.1| - 9.6e-16 58.5 0.0 1.3e-12 48.2 0.0 2.1 1 1 0 1 1 1 1 AAA domain DUF4162 PF13732.1 gi|336254339|ref|YP_004597446.1| - 9.2e-08 32.4 0.1 1.7e-07 31.6 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_23 PF13476.1 gi|336254339|ref|YP_004597446.1| - 0.0017 18.7 0.2 0.0071 16.6 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.1 gi|336254339|ref|YP_004597446.1| - 0.0022 17.6 1.8 0.0089 15.6 0.3 2.5 2 1 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|336254339|ref|YP_004597446.1| - 0.0077 15.6 0.6 0.58 9.5 0.1 2.6 3 0 0 3 3 3 1 AAA-like domain AAA_29 PF13555.1 gi|336254339|ref|YP_004597446.1| - 0.012 15.1 0.1 0.022 14.2 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_17 PF13207.1 gi|336254339|ref|YP_004597446.1| - 0.013 16.3 2.1 0.14 13.0 1.5 2.6 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|336254339|ref|YP_004597446.1| - 0.016 15.3 0.2 0.064 13.3 0.1 2.0 1 1 0 1 1 1 0 AAA domain SMC_N PF02463.14 gi|336254339|ref|YP_004597446.1| - 0.018 14.3 0.0 3.8 6.6 0.0 2.3 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_25 PF13481.1 gi|336254339|ref|YP_004597446.1| - 0.021 14.2 0.2 0.056 12.8 0.1 1.7 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.17 gi|336254339|ref|YP_004597446.1| - 0.021 14.2 0.8 0.04 13.3 0.5 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_19 PF13245.1 gi|336254339|ref|YP_004597446.1| - 0.038 13.7 1.1 0.081 12.6 0.1 2.0 2 0 0 2 2 2 0 Part of AAA domain MobB PF03205.9 gi|336254339|ref|YP_004597446.1| - 0.063 12.9 0.2 0.15 11.7 0.2 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_24 PF13479.1 gi|336254339|ref|YP_004597446.1| - 0.076 12.5 1.0 2.9 7.3 0.3 2.4 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|336254339|ref|YP_004597446.1| - 0.083 12.7 1.1 0.25 11.2 0.0 2.4 3 0 0 3 3 2 0 AAA domain AAA_15 PF13175.1 gi|336254339|ref|YP_004597446.1| - 0.086 11.8 0.0 1.4 7.8 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_16 PF13191.1 gi|336254339|ref|YP_004597446.1| - 0.087 12.7 0.2 0.25 11.3 0.0 2.0 1 1 1 2 2 2 0 AAA ATPase domain AAA PF00004.24 gi|336254339|ref|YP_004597446.1| - 0.19 11.9 1.2 0.86 9.8 0.8 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.1 gi|336254339|ref|YP_004597446.1| - 0.25 11.2 4.3 0.47 10.4 0.7 2.8 2 1 0 2 2 2 0 AAA domain HxlR PF01638.12 gi|336254340|ref|YP_004597447.1| - 1.4e-20 72.6 0.0 1.7e-20 72.4 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_34 PF13601.1 gi|336254340|ref|YP_004597447.1| - 2.1e-07 30.8 0.0 2.9e-07 30.4 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_27 PF13463.1 gi|336254340|ref|YP_004597447.1| - 6.5e-06 26.3 0.0 9e-06 25.9 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|336254340|ref|YP_004597447.1| - 0.00024 20.6 0.0 0.00032 20.3 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family PadR PF03551.9 gi|336254340|ref|YP_004597447.1| - 0.00081 19.1 0.0 0.0012 18.5 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.1 gi|336254340|ref|YP_004597447.1| - 0.0037 17.0 0.0 0.0055 16.4 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix MarR_2 PF12802.2 gi|336254340|ref|YP_004597447.1| - 0.0064 16.1 0.0 0.0093 15.6 0.0 1.2 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|336254340|ref|YP_004597447.1| - 0.0093 15.6 0.0 0.014 15.0 0.0 1.3 1 0 0 1 1 1 1 MarR family Trp_repressor PF01371.14 gi|336254340|ref|YP_004597447.1| - 0.015 15.2 0.0 0.021 14.7 0.0 1.2 1 0 0 1 1 1 0 Trp repressor protein TrmB PF01978.14 gi|336254340|ref|YP_004597447.1| - 0.026 14.2 0.0 0.034 13.8 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|336254340|ref|YP_004597447.1| - 0.048 13.4 0.1 0.074 12.8 0.1 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2250 PF10007.4 gi|336254340|ref|YP_004597447.1| - 0.084 12.7 0.2 7.8 6.4 0.0 2.1 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) TFIIE_alpha PF02002.12 gi|336254340|ref|YP_004597447.1| - 0.13 11.7 0.0 0.17 11.3 0.0 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit UPF0179 PF03684.8 gi|336254341|ref|YP_004597448.1| - 2.2e-50 169.9 0.1 2.5e-50 169.7 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0179) DDE_Tnp_1_6 PF13751.1 gi|336254341|ref|YP_004597448.1| - 0.00079 19.4 0.1 0.0021 18.0 0.0 1.7 2 0 0 2 2 2 1 Transposase DDE domain MelC1 PF06236.6 gi|336254341|ref|YP_004597448.1| - 0.0086 16.0 0.0 0.013 15.5 0.0 1.3 1 0 0 1 1 1 1 Tyrosinase co-factor MelC1 DUF2188 PF09954.4 gi|336254342|ref|YP_004597449.1| - 0.075 12.9 0.0 0.16 11.9 0.0 1.6 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2188) PrkA PF06798.7 gi|336254343|ref|YP_004597450.1| - 1.5e-76 257.0 6.9 1.5e-76 257.0 4.8 1.9 2 0 0 2 2 2 1 PrkA serine protein kinase C-terminal domain AAA_PrkA PF08298.6 gi|336254343|ref|YP_004597450.1| - 2.5e-63 213.9 0.0 4e-63 213.2 0.0 1.3 1 0 0 1 1 1 1 PrkA AAA domain AAA_PrkA PF08298.6 gi|336254344|ref|YP_004597451.1| - 8.4e-14 51.0 0.0 1.6e-10 40.2 0.0 3.2 2 1 0 2 2 2 2 PrkA AAA domain PrkA PF06798.7 gi|336254344|ref|YP_004597451.1| - 2e-08 33.8 1.5 5.5e-08 32.4 1.0 1.7 1 1 0 1 1 1 1 PrkA serine protein kinase C-terminal domain AAA_22 PF13401.1 gi|336254344|ref|YP_004597451.1| - 0.14 12.3 0.2 0.58 10.3 0.0 2.2 2 1 0 2 2 2 0 AAA domain DUF444 PF04285.7 gi|336254345|ref|YP_004597452.1| - 3.3e-91 306.0 0.2 3.8e-91 305.8 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF444) VWA_2 PF13519.1 gi|336254345|ref|YP_004597452.1| - 0.12 12.4 0.0 2.2 8.3 0.0 2.2 1 1 0 2 2 2 0 von Willebrand factor type A domain SpoVR PF04293.8 gi|336254346|ref|YP_004597453.1| - 2.6e-84 283.0 5.0 9.7e-73 244.9 0.8 2.2 2 0 0 2 2 2 2 SpoVR like protein HEAT_2 PF13646.1 gi|336254347|ref|YP_004597454.1| - 3.5e-11 43.2 14.0 4.3e-06 26.9 3.6 2.8 1 1 1 2 2 2 2 HEAT repeats HEAT_EZ PF13513.1 gi|336254347|ref|YP_004597454.1| - 8.2e-07 29.3 21.5 6.1e-05 23.3 2.4 4.2 3 1 1 4 4 4 3 HEAT-like repeat HEAT PF02985.17 gi|336254347|ref|YP_004597454.1| - 3.9e-06 26.4 14.4 0.014 15.4 0.2 4.7 5 0 0 5 5 5 2 HEAT repeat Arm PF00514.18 gi|336254347|ref|YP_004597454.1| - 6.4e-06 25.7 2.6 0.36 10.7 0.1 3.5 3 0 0 3 3 3 3 Armadillo/beta-catenin-like repeat UPF0047 PF01894.12 gi|336254348|ref|YP_004597455.1| - 8e-36 122.4 0.0 9.4e-36 122.2 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 GDPD PF03009.12 gi|336254349|ref|YP_004597456.1| - 8.8e-28 97.4 0.1 1.7e-26 93.2 0.1 2.0 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family Response_reg PF00072.19 gi|336254350|ref|YP_004597457.1| - 1.3e-22 79.8 0.0 1.5e-22 79.6 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain adh_short PF00106.20 gi|336254351|ref|YP_004597458.1| - 4.3e-23 82.0 0.1 5.9e-23 81.5 0.1 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|336254351|ref|YP_004597458.1| - 1.9e-19 70.3 0.0 1.4e-18 67.5 0.0 1.9 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase Epimerase PF01370.16 gi|336254351|ref|YP_004597458.1| - 2.3e-08 33.7 0.0 3.9e-08 33.0 0.0 1.6 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family KR PF08659.5 gi|336254351|ref|YP_004597458.1| - 4.9e-07 29.5 0.1 7e-07 29.0 0.1 1.3 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.1 gi|336254351|ref|YP_004597458.1| - 9.6e-05 22.4 0.5 0.00016 21.7 0.3 1.5 1 1 0 1 1 1 1 NADH(P)-binding RmlD_sub_bind PF04321.12 gi|336254351|ref|YP_004597458.1| - 0.023 13.5 0.0 0.03 13.2 0.0 1.2 1 0 0 1 1 1 0 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|336254351|ref|YP_004597458.1| - 0.077 11.6 0.0 0.11 11.1 0.0 1.2 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family LAT PF15234.1 gi|336254352|ref|YP_004597459.1| - 0.053 12.9 1.8 0.066 12.6 1.3 1.1 1 0 0 1 1 1 0 Linker for activation of T-cells TrmB PF01978.14 gi|336254353|ref|YP_004597460.1| - 9.5e-07 28.4 0.4 1.2e-06 28.1 0.3 1.1 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MotA_activ PF09114.5 gi|336254353|ref|YP_004597460.1| - 0.0012 18.5 0.1 0.0014 18.3 0.0 1.1 1 0 0 1 1 1 1 Transcription factor MotA, activation domain DUF4423 PF14394.1 gi|336254353|ref|YP_004597460.1| - 0.012 15.1 0.0 0.012 15.1 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) Sulfolobus_pRN PF05584.6 gi|336254353|ref|YP_004597460.1| - 0.024 14.6 0.1 0.029 14.3 0.1 1.1 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein HTH_36 PF13730.1 gi|336254353|ref|YP_004597460.1| - 0.037 14.1 0.2 0.053 13.6 0.1 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_27 PF13463.1 gi|336254353|ref|YP_004597460.1| - 0.042 14.1 0.1 0.051 13.9 0.1 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain TFIIE_alpha PF02002.12 gi|336254353|ref|YP_004597460.1| - 0.081 12.4 0.0 0.098 12.1 0.0 1.1 1 0 0 1 1 1 0 TFIIE alpha subunit Gln-synt_C PF00120.19 gi|336254354|ref|YP_004597461.1| - 1.3e-105 352.2 0.0 8.7e-105 349.5 0.1 1.9 2 0 0 2 2 2 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.14 gi|336254354|ref|YP_004597461.1| - 3.4e-31 106.6 0.0 8.6e-31 105.3 0.0 1.7 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain Terminase_GpA PF05876.7 gi|336254355|ref|YP_004597462.1| - 0.00015 20.2 0.5 0.00015 20.2 0.3 1.0 1 0 0 1 1 1 1 Phage terminase large subunit (GpA) DUF2296 PF10058.4 gi|336254355|ref|YP_004597462.1| - 0.03 14.0 0.3 0.059 13.1 0.2 1.5 1 1 0 1 1 1 0 Predicted integral membrane metal-binding protein (DUF2296) Prim_Zn_Ribbon PF08273.7 gi|336254355|ref|YP_004597462.1| - 0.032 14.2 0.3 0.77 9.8 0.0 2.3 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase DZR PF12773.2 gi|336254355|ref|YP_004597462.1| - 0.041 13.7 0.5 0.081 12.7 0.3 1.5 1 1 0 1 1 1 0 Double zinc ribbon zf-CHY PF05495.7 gi|336254355|ref|YP_004597462.1| - 0.053 13.6 0.1 0.081 13.1 0.1 1.3 1 0 0 1 1 1 0 CHY zinc finger DUF1272 PF06906.6 gi|336254355|ref|YP_004597462.1| - 0.083 12.7 1.3 0.66 9.8 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1272) C1_3 PF07649.7 gi|336254355|ref|YP_004597462.1| - 0.15 12.1 0.7 4.8 7.3 0.0 2.2 2 0 0 2 2 2 0 C1-like domain DUF2197 PF09963.4 gi|336254355|ref|YP_004597462.1| - 0.15 12.0 3.1 0.9 9.5 2.0 2.1 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2197) Thioredoxin PF00085.15 gi|336254356|ref|YP_004597463.1| - 1.1e-10 41.0 0.0 1.4e-10 40.7 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin TraF PF13728.1 gi|336254356|ref|YP_004597463.1| - 0.0001 21.8 0.0 0.00076 19.0 0.0 1.9 1 1 0 1 1 1 1 F plasmid transfer operon protein Thioredoxin_2 PF13098.1 gi|336254356|ref|YP_004597463.1| - 0.00031 20.9 0.0 0.075 13.2 0.0 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_3 PF13192.1 gi|336254356|ref|YP_004597463.1| - 0.006 16.3 0.0 0.0088 15.8 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin domain HyaE PF07449.6 gi|336254356|ref|YP_004597463.1| - 0.0096 15.8 0.0 0.013 15.3 0.0 1.4 1 1 0 1 1 1 1 Hydrogenase-1 expression protein HyaE Phosducin PF02114.11 gi|336254356|ref|YP_004597463.1| - 0.054 12.2 0.0 0.061 12.0 0.0 1.1 1 0 0 1 1 1 0 Phosducin Mrr_N PF14338.1 gi|336254357|ref|YP_004597464.1| - 0.0043 17.1 0.0 0.0075 16.3 0.0 1.3 1 0 0 1 1 1 1 Mrr N-terminal domain HTH_20 PF12840.2 gi|336254357|ref|YP_004597464.1| - 0.0073 16.0 0.0 0.0099 15.6 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_45 PF14947.1 gi|336254357|ref|YP_004597464.1| - 0.03 14.1 0.0 0.051 13.3 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_27 PF13463.1 gi|336254357|ref|YP_004597464.1| - 0.11 12.8 0.0 0.14 12.5 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain FYDLN_acid PF09538.5 gi|336254359|ref|YP_004597466.1| - 0.58 10.7 3.9 1.1 9.8 2.7 1.6 1 1 0 1 1 1 0 Protein of unknown function (FYDLN_acid) CDC45 PF02724.9 gi|336254360|ref|YP_004597467.1| - 4.7 5.1 6.1 6.7 4.6 4.2 1.2 1 0 0 1 1 1 0 CDC45-like protein Daxx PF03344.10 gi|336254361|ref|YP_004597468.1| - 0.11 10.9 7.9 0.13 10.7 5.5 1.0 1 0 0 1 1 1 0 Daxx Family DEAD_assoc PF08494.6 gi|336254362|ref|YP_004597469.1| - 3e-40 137.9 0.0 7.8e-40 136.5 0.0 1.8 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.24 gi|336254362|ref|YP_004597469.1| - 8e-31 106.7 0.0 2.6e-30 105.1 0.0 1.8 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|336254362|ref|YP_004597469.1| - 1.3e-18 66.6 0.0 5.3e-18 64.6 0.0 2.1 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|336254362|ref|YP_004597469.1| - 1.1e-06 28.6 0.0 2.6e-06 27.3 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_25 PF13481.1 gi|336254362|ref|YP_004597469.1| - 7.4e-05 22.2 0.1 0.00033 20.1 0.1 2.1 1 1 0 1 1 1 1 AAA domain SNF2_N PF00176.18 gi|336254362|ref|YP_004597469.1| - 0.00031 19.6 0.0 0.011 14.5 0.0 2.1 2 0 0 2 2 2 1 SNF2 family N-terminal domain AAA_19 PF13245.1 gi|336254362|ref|YP_004597469.1| - 0.00035 20.2 0.2 0.0036 17.0 0.0 2.8 3 0 0 3 3 3 1 Part of AAA domain UvrD-helicase PF00580.16 gi|336254362|ref|YP_004597469.1| - 0.0053 16.1 0.0 0.0095 15.2 0.0 1.3 1 0 0 1 1 1 1 UvrD/REP helicase N-terminal domain Glyoxalase_2 PF12681.2 gi|336254362|ref|YP_004597469.1| - 0.01 16.4 0.0 0.065 13.8 0.0 2.5 2 0 0 2 2 2 0 Glyoxalase-like domain Zn-ribbon_8 PF09723.5 gi|336254362|ref|YP_004597469.1| - 0.028 14.3 2.0 0.059 13.3 1.4 1.5 1 0 0 1 1 1 0 Zinc ribbon domain AAA_10 PF12846.2 gi|336254362|ref|YP_004597469.1| - 0.16 11.3 0.2 13 5.1 0.0 2.7 2 1 1 3 3 3 0 AAA-like domain HATPase_c PF02518.21 gi|336254363|ref|YP_004597470.1| - 1.8e-29 101.6 0.0 5.9e-29 100.0 0.0 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|336254363|ref|YP_004597470.1| - 4.3e-26 91.3 0.0 4.5e-15 55.8 0.0 2.6 2 0 0 2 2 2 2 PAS domain PAS PF00989.19 gi|336254363|ref|YP_004597470.1| - 8e-25 86.8 0.0 1.1e-14 54.1 0.0 2.9 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.5 gi|336254363|ref|YP_004597470.1| - 6.7e-17 61.5 0.0 4.6e-13 49.1 0.0 3.0 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.1 gi|336254363|ref|YP_004597470.1| - 5.7e-15 54.5 0.0 1.4e-08 34.2 0.0 3.0 2 0 0 2 2 2 2 PAS domain GAF PF01590.21 gi|336254363|ref|YP_004597470.1| - 1.5e-12 47.8 1.4 7.2e-12 45.6 0.4 2.4 2 0 0 2 2 2 1 GAF domain HisKA PF00512.20 gi|336254363|ref|YP_004597470.1| - 8.6e-12 44.8 0.9 3e-11 43.1 0.1 2.4 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain GAF_3 PF13492.1 gi|336254363|ref|YP_004597470.1| - 2.6e-11 43.7 0.1 6.1e-11 42.5 0.1 1.7 1 0 0 1 1 1 1 GAF domain GAF_2 PF13185.1 gi|336254363|ref|YP_004597470.1| - 1.4e-10 41.8 0.3 1.4e-10 41.8 0.2 2.5 3 0 0 3 3 2 1 GAF domain PAS_3 PF08447.6 gi|336254363|ref|YP_004597470.1| - 1e-08 35.1 0.5 4e-05 23.6 0.0 3.2 3 1 0 3 3 3 2 PAS fold HATPase_c_5 PF14501.1 gi|336254363|ref|YP_004597470.1| - 0.00033 20.2 0.0 0.00061 19.4 0.0 1.3 1 0 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.1 gi|336254363|ref|YP_004597470.1| - 0.0072 15.9 0.0 0.014 15.0 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|336254363|ref|YP_004597470.1| - 0.0095 15.7 0.0 0.02 14.7 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_10 PF13596.1 gi|336254363|ref|YP_004597470.1| - 0.01 16.1 0.0 0.023 14.9 0.0 1.6 1 0 0 1 1 1 0 PAS domain Response_reg PF00072.19 gi|336254364|ref|YP_004597471.1| - 9.4e-14 51.3 0.0 1.2e-13 51.0 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain Methyltransf_25 PF13649.1 gi|336254364|ref|YP_004597471.1| - 0.00043 20.5 0.1 0.0032 17.7 0.1 2.0 1 1 0 1 1 1 1 Methyltransferase domain OKR_DC_1_N PF03709.10 gi|336254364|ref|YP_004597471.1| - 0.0091 16.0 0.1 0.014 15.4 0.1 1.4 1 1 0 1 1 1 1 Orn/Lys/Arg decarboxylase, N-terminal domain PS_Dcarbxylase PF02666.10 gi|336254365|ref|YP_004597472.1| - 1.9e-21 76.3 0.0 7.8e-18 64.5 0.0 2.3 1 1 1 2 2 2 2 Phosphatidylserine decarboxylase Catalase PF00199.14 gi|336254366|ref|YP_004597473.1| - 6.8e-162 538.5 0.5 8.9e-162 538.1 0.4 1.1 1 0 0 1 1 1 1 Catalase Catalase-rel PF06628.7 gi|336254366|ref|YP_004597473.1| - 5.7e-23 80.5 0.3 1.2e-22 79.5 0.2 1.6 1 0 0 1 1 1 1 Catalase-related immune-responsive DJ-1_PfpI PF01965.19 gi|336254366|ref|YP_004597473.1| - 2.7e-13 49.5 0.2 6.8e-13 48.3 0.1 1.6 1 0 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|336254366|ref|YP_004597473.1| - 0.034 13.4 0.0 0.063 12.5 0.0 1.5 1 0 0 1 1 1 0 Putative amidotransferase HTH_10 PF04967.7 gi|336254368|ref|YP_004597475.1| - 8.1e-18 63.7 0.1 1.7e-17 62.6 0.1 1.6 1 0 0 1 1 1 1 HTH DNA binding domain HTH_38 PF13936.1 gi|336254368|ref|YP_004597475.1| - 0.00056 19.4 0.0 0.0015 18.0 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AraC PF00165.18 gi|336254368|ref|YP_004597475.1| - 0.0015 18.2 0.0 0.0065 16.2 0.0 2.1 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix proteins, AraC family MarR_2 PF12802.2 gi|336254368|ref|YP_004597475.1| - 0.0019 17.8 0.1 0.0038 16.8 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_3 PF01381.17 gi|336254368|ref|YP_004597475.1| - 0.0035 17.1 0.0 0.0073 16.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_20 PF12840.2 gi|336254368|ref|YP_004597475.1| - 0.004 16.9 0.0 0.008 15.9 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain TetR_N PF00440.18 gi|336254368|ref|YP_004597475.1| - 0.0041 16.7 0.0 0.0089 15.6 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family HTH_24 PF13412.1 gi|336254368|ref|YP_004597475.1| - 0.0055 16.0 0.0 0.01 15.1 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Phage_CI_repr PF07022.8 gi|336254368|ref|YP_004597475.1| - 0.0056 16.7 0.0 0.013 15.5 0.0 1.6 1 0 0 1 1 1 1 Bacteriophage CI repressor helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|336254368|ref|YP_004597475.1| - 0.014 15.1 0.0 0.038 13.7 0.0 1.8 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_23 PF13384.1 gi|336254368|ref|YP_004597475.1| - 0.03 13.9 0.0 0.062 12.9 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain HTH_AsnC-type PF13404.1 gi|336254368|ref|YP_004597475.1| - 0.031 13.8 0.0 0.055 13.0 0.0 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Sigma70_r4 PF04545.11 gi|336254368|ref|YP_004597475.1| - 0.053 12.8 0.0 0.14 11.5 0.0 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_17 PF12728.2 gi|336254368|ref|YP_004597475.1| - 0.063 13.5 0.0 0.16 12.2 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_11 PF08279.7 gi|336254368|ref|YP_004597475.1| - 0.085 12.5 0.0 0.17 11.5 0.0 1.4 1 0 0 1 1 1 0 HTH domain AAA PF00004.24 gi|336254369|ref|YP_004597476.1| - 3.5e-95 315.2 0.0 1.3e-46 158.0 0.0 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|336254369|ref|YP_004597476.1| - 4.9e-22 77.6 0.7 2.9e-21 75.2 0.3 2.5 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.7 gi|336254369|ref|YP_004597476.1| - 3.1e-15 55.8 0.0 4.9e-07 29.0 0.0 3.4 3 1 1 4 4 3 2 Holliday junction DNA helicase ruvB N-terminus AAA_2 PF07724.9 gi|336254369|ref|YP_004597476.1| - 5.1e-14 52.5 0.0 4.7e-07 29.8 0.0 2.4 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_17 PF13207.1 gi|336254369|ref|YP_004597476.1| - 1e-13 52.1 0.8 7.4e-06 26.7 0.0 3.3 3 2 0 3 3 2 2 AAA domain AAA_16 PF13191.1 gi|336254369|ref|YP_004597476.1| - 2.1e-13 50.6 2.8 2.2e-05 24.5 0.0 4.0 3 2 0 3 3 2 2 AAA ATPase domain AAA_33 PF13671.1 gi|336254369|ref|YP_004597476.1| - 2.2e-13 50.3 0.0 2.2e-06 27.6 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_5 PF07728.9 gi|336254369|ref|YP_004597476.1| - 9.9e-13 48.0 0.5 3.8e-05 23.4 0.0 3.8 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_22 PF13401.1 gi|336254369|ref|YP_004597476.1| - 1.2e-11 44.8 0.2 0.00048 20.2 0.0 3.9 2 2 0 2 2 2 2 AAA domain AAA_14 PF13173.1 gi|336254369|ref|YP_004597476.1| - 5e-10 39.3 0.0 0.00058 19.7 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|336254369|ref|YP_004597476.1| - 7e-10 38.5 0.2 0.0021 17.7 0.0 3.0 2 0 0 2 2 2 2 Part of AAA domain Zeta_toxin PF06414.7 gi|336254369|ref|YP_004597476.1| - 8.2e-10 38.1 0.0 0.00018 20.6 0.0 2.7 2 0 0 2 2 2 2 Zeta toxin AAA_18 PF13238.1 gi|336254369|ref|YP_004597476.1| - 9.2e-09 35.6 0.3 0.015 15.6 0.0 3.5 3 0 0 3 3 3 2 AAA domain TIP49 PF06068.8 gi|336254369|ref|YP_004597476.1| - 1.5e-08 33.7 0.0 0.0018 17.1 0.0 2.2 2 0 0 2 2 2 2 TIP49 C-terminus AAA_28 PF13521.1 gi|336254369|ref|YP_004597476.1| - 1.5e-08 34.7 1.7 0.004 17.1 0.0 3.3 4 0 0 4 4 2 2 AAA domain IstB_IS21 PF01695.12 gi|336254369|ref|YP_004597476.1| - 5.9e-08 32.3 0.0 0.0076 15.6 0.0 2.5 2 0 0 2 2 2 2 IstB-like ATP binding protein CDC48_2 PF02933.12 gi|336254369|ref|YP_004597476.1| - 1.2e-07 31.2 0.2 1.2e-07 31.2 0.1 2.0 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), domain 2 AAA_25 PF13481.1 gi|336254369|ref|YP_004597476.1| - 1.9e-07 30.7 5.5 0.23 10.8 0.2 4.8 2 2 1 3 3 3 2 AAA domain AAA_3 PF07726.6 gi|336254369|ref|YP_004597476.1| - 1.9e-07 30.7 0.0 0.018 14.6 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.17 gi|336254369|ref|YP_004597476.1| - 5.1e-07 29.8 0.0 0.016 15.3 0.0 2.4 2 0 0 2 2 2 2 RNA helicase Sigma54_activ_2 PF14532.1 gi|336254369|ref|YP_004597476.1| - 9.6e-07 28.9 0.0 0.022 14.7 0.0 2.4 2 0 0 2 2 2 2 Sigma-54 interaction domain ABC_tran PF00005.22 gi|336254369|ref|YP_004597476.1| - 1.3e-06 28.6 0.0 0.036 14.3 0.0 2.5 2 0 0 2 2 2 2 ABC transporter Mg_chelatase PF01078.16 gi|336254369|ref|YP_004597476.1| - 1.4e-06 27.6 0.3 0.051 12.7 0.1 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.21 gi|336254369|ref|YP_004597476.1| - 1.5e-05 24.5 0.0 0.3 10.5 0.0 3.0 3 1 1 4 4 2 2 Sigma-54 interaction domain NACHT PF05729.7 gi|336254369|ref|YP_004597476.1| - 2.8e-05 23.8 0.2 0.52 9.9 0.0 4.0 4 0 0 4 4 4 1 NACHT domain PhoH PF02562.11 gi|336254369|ref|YP_004597476.1| - 5.4e-05 22.5 0.0 0.32 10.2 0.0 2.5 2 0 0 2 2 2 2 PhoH-like protein AAA_24 PF13479.1 gi|336254369|ref|YP_004597476.1| - 7e-05 22.5 0.0 0.31 10.5 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_11 PF13086.1 gi|336254369|ref|YP_004597476.1| - 9.5e-05 22.0 0.0 0.61 9.6 0.0 2.5 2 1 0 2 2 2 2 AAA domain DUF2075 PF09848.4 gi|336254369|ref|YP_004597476.1| - 9.7e-05 21.4 0.0 0.28 10.1 0.0 2.4 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) DUF815 PF05673.8 gi|336254369|ref|YP_004597476.1| - 0.00012 21.1 0.0 0.26 10.1 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF815) Arch_ATPase PF01637.13 gi|336254369|ref|YP_004597476.1| - 0.00012 21.8 0.0 0.79 9.3 0.0 3.8 2 2 0 2 2 2 1 Archaeal ATPase Parvo_NS1 PF01057.12 gi|336254369|ref|YP_004597476.1| - 0.00015 20.7 0.0 0.16 10.8 0.0 2.3 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 NB-ARC PF00931.17 gi|336254369|ref|YP_004597476.1| - 0.00017 20.5 0.0 0.11 11.3 0.0 2.2 2 0 0 2 2 2 2 NB-ARC domain UPF0079 PF02367.12 gi|336254369|ref|YP_004597476.1| - 0.00045 19.8 0.0 0.97 9.0 0.0 2.4 2 0 0 2 2 2 2 Uncharacterised P-loop hydrolase UPF0079 SKI PF01202.17 gi|336254369|ref|YP_004597476.1| - 0.001 18.9 0.1 0.46 10.3 0.0 2.9 3 0 0 3 3 2 1 Shikimate kinase KaiC PF06745.8 gi|336254369|ref|YP_004597476.1| - 0.0011 18.1 0.0 1.4 7.9 0.0 2.8 3 0 0 3 3 2 2 KaiC AAA_30 PF13604.1 gi|336254369|ref|YP_004597476.1| - 0.0011 18.5 0.0 1.3 8.6 0.0 2.6 2 0 0 2 2 2 1 AAA domain Cytidylate_kin2 PF13189.1 gi|336254369|ref|YP_004597476.1| - 0.0063 16.4 0.0 3.4 7.5 0.0 2.5 2 0 0 2 2 2 0 Cytidylate kinase-like family CPT PF07931.7 gi|336254369|ref|YP_004597476.1| - 0.015 14.8 0.1 5 6.7 0.0 3.4 4 0 0 4 4 3 0 Chloramphenicol phosphotransferase-like protein ResIII PF04851.10 gi|336254369|ref|YP_004597476.1| - 0.03 14.1 0.0 2.6 7.8 0.0 2.4 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit NTPase_1 PF03266.10 gi|336254369|ref|YP_004597476.1| - 0.032 13.9 0.1 9.6 5.8 0.0 3.0 2 2 1 3 3 3 0 NTPase Viral_helicase1 PF01443.13 gi|336254369|ref|YP_004597476.1| - 0.049 13.1 0.0 4.8 6.6 0.0 2.3 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase AFG1_ATPase PF03969.11 gi|336254369|ref|YP_004597476.1| - 0.05 12.3 0.0 2.7 6.7 0.0 2.3 2 0 0 2 2 2 0 AFG1-like ATPase Torsin PF06309.6 gi|336254369|ref|YP_004597476.1| - 0.061 13.1 0.0 5.3 6.9 0.0 2.4 2 0 0 2 2 2 0 Torsin KTI12 PF08433.5 gi|336254369|ref|YP_004597476.1| - 0.13 11.4 0.0 17 4.4 0.0 2.3 2 0 0 2 2 2 0 Chromatin associated protein KTI12 Bac_DnaA PF00308.13 gi|336254369|ref|YP_004597476.1| - 0.22 11.1 0.0 7.1 6.2 0.0 2.5 3 0 0 3 3 2 0 Bacterial dnaA protein KAP_NTPase PF07693.9 gi|336254369|ref|YP_004597476.1| - 0.24 10.3 0.0 14 4.5 0.0 2.2 2 0 0 2 2 2 0 KAP family P-loop domain DAP3 PF10236.4 gi|336254369|ref|YP_004597476.1| - 0.26 10.1 0.0 3.5 6.4 0.0 2.1 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 Adaptin_N PF01602.15 gi|336254369|ref|YP_004597476.1| - 0.34 9.1 0.0 0.47 8.7 0.0 1.1 1 0 0 1 1 1 0 Adaptin N terminal region zf-C2H2_3 PF13878.1 gi|336254370|ref|YP_004597477.1| - 0.0074 15.8 3.3 0.01 15.3 2.3 1.4 1 1 0 1 1 1 1 zinc-finger of acetyl-transferase ESCO RNHCP PF12647.2 gi|336254370|ref|YP_004597477.1| - 0.042 13.6 0.2 0.048 13.4 0.1 1.1 1 0 0 1 1 1 0 RNHCP domain zf-C2H2 PF00096.21 gi|336254370|ref|YP_004597477.1| - 0.086 13.2 0.7 0.12 12.7 0.5 1.3 1 0 0 1 1 1 0 Zinc finger, C2H2 type Rubredoxin PF00301.15 gi|336254370|ref|YP_004597477.1| - 0.1 12.5 0.4 0.13 12.2 0.3 1.3 1 0 0 1 1 1 0 Rubredoxin SprT-like PF10263.4 gi|336254370|ref|YP_004597477.1| - 0.12 12.0 0.1 0.12 12.0 0.1 1.0 1 0 0 1 1 1 0 SprT-like family Pyridox_ox_2 PF12900.2 gi|336254372|ref|YP_004597479.1| - 0.017 14.9 0.2 1.5 8.6 0.0 2.5 2 1 0 2 2 2 0 Pyridoxamine 5'-phosphate oxidase GHMP_kinases_N PF00288.21 gi|336254373|ref|YP_004597480.1| - 1.8e-09 37.4 1.3 4.2e-09 36.3 0.9 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|336254373|ref|YP_004597480.1| - 0.0022 18.1 0.0 0.0057 16.8 0.0 1.8 1 0 0 1 1 1 1 GHMP kinases C terminal CM_2 PF01817.16 gi|336254374|ref|YP_004597481.1| - 1.1e-19 70.3 4.5 1.3e-19 70.0 3.1 1.1 1 0 0 1 1 1 1 Chorismate mutase type II DUF812 PF05667.6 gi|336254374|ref|YP_004597481.1| - 0.022 13.2 4.4 0.021 13.3 3.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF812) Gon7 PF08738.5 gi|336254374|ref|YP_004597481.1| - 0.16 11.9 1.1 0.25 11.3 0.8 1.3 1 0 0 1 1 1 0 Gon7 family DUF4404 PF14357.1 gi|336254374|ref|YP_004597481.1| - 0.4 11.1 4.0 0.64 10.4 2.7 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4404) HABP4_PAI-RBP1 PF04774.10 gi|336254374|ref|YP_004597481.1| - 3.2 8.3 6.5 7.3 7.1 0.1 2.2 1 1 1 2 2 2 0 Hyaluronan / mRNA binding family HxlR PF01638.12 gi|336254375|ref|YP_004597482.1| - 7.5e-15 54.3 0.0 8.7e-15 54.1 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_20 PF12840.2 gi|336254375|ref|YP_004597482.1| - 2.1e-06 27.4 0.1 2.8e-06 27.0 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|336254375|ref|YP_004597482.1| - 6.9e-06 25.6 0.0 1.1e-05 24.9 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|336254375|ref|YP_004597482.1| - 1.9e-05 24.2 0.0 2.9e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|336254375|ref|YP_004597482.1| - 0.00011 21.6 0.1 0.00019 20.9 0.1 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|336254375|ref|YP_004597482.1| - 0.00052 19.3 0.0 0.00073 18.8 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|336254375|ref|YP_004597482.1| - 0.0025 18.0 0.0 0.0037 17.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain MAGSP PF03082.9 gi|336254375|ref|YP_004597482.1| - 0.027 13.8 0.0 0.032 13.6 0.0 1.1 1 0 0 1 1 1 0 Male accessory gland secretory protein HTH_36 PF13730.1 gi|336254375|ref|YP_004597482.1| - 0.038 14.1 0.0 0.056 13.5 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_11 PF08279.7 gi|336254375|ref|YP_004597482.1| - 0.068 12.8 0.1 0.11 12.2 0.1 1.3 1 0 0 1 1 1 0 HTH domain FeoC PF09012.5 gi|336254375|ref|YP_004597482.1| - 0.072 12.8 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 FeoC like transcriptional regulator HTH_5 PF01022.15 gi|336254375|ref|YP_004597482.1| - 0.081 12.6 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_DeoR PF08220.7 gi|336254375|ref|YP_004597482.1| - 0.098 12.2 0.1 0.16 11.5 0.1 1.3 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Cullin_Nedd8 PF10557.4 gi|336254375|ref|YP_004597482.1| - 0.13 12.0 0.0 0.21 11.4 0.0 1.3 1 0 0 1 1 1 0 Cullin protein neddylation domain DUF2087 PF09860.4 gi|336254375|ref|YP_004597482.1| - 0.28 10.9 1.0 8.5 6.2 0.0 2.7 2 1 1 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2087) F420_oxidored PF03807.12 gi|336254376|ref|YP_004597483.1| - 5.1e-17 62.0 0.1 1.2e-16 60.9 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent HTH_10 PF04967.7 gi|336254376|ref|YP_004597483.1| - 7.9e-12 44.5 0.0 1.6e-11 43.5 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain NAD_binding_2 PF03446.10 gi|336254376|ref|YP_004597483.1| - 0.00043 20.1 0.0 0.00081 19.2 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase HTH_5 PF01022.15 gi|336254376|ref|YP_004597483.1| - 0.0013 18.2 0.1 0.023 14.3 0.1 2.5 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_3 PF01381.17 gi|336254376|ref|YP_004597483.1| - 0.0044 16.8 0.1 0.088 12.6 0.1 2.4 1 1 0 1 1 1 1 Helix-turn-helix IlvN PF07991.7 gi|336254376|ref|YP_004597483.1| - 0.0058 16.0 0.1 0.0091 15.3 0.0 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain HTH_20 PF12840.2 gi|336254376|ref|YP_004597483.1| - 0.0062 16.3 0.0 0.015 15.0 0.0 1.7 1 1 0 1 1 1 1 Helix-turn-helix domain Shikimate_DH PF01488.15 gi|336254376|ref|YP_004597483.1| - 0.011 15.8 0.0 0.017 15.2 0.0 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase AlaDh_PNT_C PF01262.16 gi|336254376|ref|YP_004597483.1| - 0.012 15.2 0.0 0.017 14.6 0.0 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.13 gi|336254376|ref|YP_004597483.1| - 0.014 15.0 0.1 0.03 13.9 0.1 1.6 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Sigma70_r3 PF04539.11 gi|336254376|ref|YP_004597483.1| - 0.017 14.9 0.2 0.049 13.5 0.1 1.7 1 0 0 1 1 1 0 Sigma-70 region 3 HTH_18 PF12833.2 gi|336254376|ref|YP_004597483.1| - 0.05 13.7 0.1 1.2 9.3 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain NAD_Gly3P_dh_N PF01210.18 gi|336254376|ref|YP_004597483.1| - 0.057 13.1 0.1 0.1 12.2 0.0 1.4 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Sigma70_r4 PF04545.11 gi|336254376|ref|YP_004597483.1| - 0.069 12.4 0.0 0.17 11.2 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 NAD_binding_7 PF13241.1 gi|336254376|ref|YP_004597483.1| - 0.077 13.2 0.2 0.46 10.7 0.1 2.1 1 1 0 1 1 1 0 Putative NAD(P)-binding HTH_11 PF08279.7 gi|336254376|ref|YP_004597483.1| - 0.093 12.3 0.0 0.28 10.8 0.0 1.8 2 0 0 2 2 1 0 HTH domain Mga PF05043.8 gi|336254376|ref|YP_004597483.1| - 0.1 12.8 0.0 2 8.7 0.1 2.5 3 0 0 3 3 3 0 Mga helix-turn-helix domain HTH_38 PF13936.1 gi|336254376|ref|YP_004597483.1| - 0.11 12.1 0.0 0.18 11.3 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain PIN PF01850.16 gi|336254377|ref|YP_004597484.1| - 1.2e-14 54.7 0.1 1.3e-14 54.5 0.0 1.0 1 0 0 1 1 1 1 PIN domain DUF217 PF02697.9 gi|336254378|ref|YP_004597485.1| - 8.4e-20 70.8 3.7 1e-19 70.5 2.5 1.1 1 0 0 1 1 1 1 Uncharacterized ACR, COG1753 TraY PF05509.6 gi|336254378|ref|YP_004597485.1| - 0.031 14.0 1.1 4.9 7.0 0.2 2.2 2 0 0 2 2 2 0 TraY domain RHH_1 PF01402.16 gi|336254378|ref|YP_004597485.1| - 0.18 11.7 0.3 0.18 11.7 0.2 3.0 3 1 0 3 3 3 0 Ribbon-helix-helix protein, copG family Trypsin_2 PF13365.1 gi|336254379|ref|YP_004597486.1| - 1.2e-13 51.0 0.5 2.1e-13 50.2 0.3 1.4 1 0 0 1 1 1 1 Trypsin-like peptidase domain Trypsin PF00089.21 gi|336254379|ref|YP_004597486.1| - 3.7e-06 26.6 0.2 0.00074 19.1 0.1 2.2 2 0 0 2 2 2 2 Trypsin Peptidase_S29 PF02907.10 gi|336254379|ref|YP_004597486.1| - 0.02 14.4 0.1 0.14 11.7 0.0 2.0 2 0 0 2 2 2 0 Hepatitis C virus NS3 protease Peptidase_S32 PF05579.8 gi|336254379|ref|YP_004597486.1| - 0.02 13.8 4.5 0.83 8.5 0.2 2.2 2 0 0 2 2 2 0 Equine arteritis virus serine endopeptidase S32 Peptidase_S46 PF10459.4 gi|336254379|ref|YP_004597486.1| - 0.03 12.7 1.2 0.38 9.1 0.2 2.3 2 1 0 2 2 2 0 Peptidase S46 Tetraspannin PF00335.15 gi|336254380|ref|YP_004597487.1| - 0.25 10.5 5.3 1.4 8.1 3.8 1.9 1 1 0 1 1 1 0 Tetraspanin family Nuc_sug_transp PF04142.10 gi|336254380|ref|YP_004597487.1| - 0.61 9.1 6.9 0.073 12.1 1.4 1.8 2 1 1 3 3 3 0 Nucleotide-sugar transporter DUF4131 PF13567.1 gi|336254380|ref|YP_004597487.1| - 4.4 6.6 7.2 0.82 9.0 1.7 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) DUF1059 PF06348.6 gi|336254381|ref|YP_004597488.1| - 0.0012 18.6 0.9 0.0016 18.2 0.6 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1059) MmoB_DmpM PF02406.12 gi|336254381|ref|YP_004597488.1| - 0.0044 16.9 0.1 0.0061 16.5 0.1 1.2 1 0 0 1 1 1 1 MmoB/DmpM family MarR_2 PF12802.2 gi|336254382|ref|YP_004597489.1| - 1.3e-07 31.1 0.6 3.4e-07 29.8 0.2 1.8 2 0 0 2 2 1 1 MarR family HTH_IclR PF09339.5 gi|336254382|ref|YP_004597489.1| - 8.3e-06 25.3 0.1 2.2e-05 23.9 0.1 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_27 PF13463.1 gi|336254382|ref|YP_004597489.1| - 1.5e-05 25.2 0.1 2.6e-05 24.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|336254382|ref|YP_004597489.1| - 7.9e-05 22.2 0.0 0.00015 21.3 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|336254382|ref|YP_004597489.1| - 8.9e-05 21.7 0.6 0.00016 20.9 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|336254382|ref|YP_004597489.1| - 0.00097 18.7 0.1 0.0021 17.7 0.0 1.6 1 1 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|336254382|ref|YP_004597489.1| - 0.0015 18.3 0.8 0.0073 16.0 0.2 2.3 3 0 0 3 3 3 1 Helix-turn-helix domain KfrA_N PF11740.3 gi|336254382|ref|YP_004597489.1| - 0.011 16.2 0.4 0.011 16.2 0.3 1.7 2 0 0 2 2 2 0 Plasmid replication region DNA-binding N-term HTH_Tnp_ISL3 PF13542.1 gi|336254382|ref|YP_004597489.1| - 0.011 14.8 0.4 0.026 13.6 0.3 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_Crp_2 PF13545.1 gi|336254382|ref|YP_004597489.1| - 0.017 14.8 0.0 0.043 13.6 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Trp_repressor PF01371.14 gi|336254382|ref|YP_004597489.1| - 0.027 14.3 0.2 0.049 13.5 0.1 1.3 1 0 0 1 1 1 0 Trp repressor protein HTH_23 PF13384.1 gi|336254382|ref|YP_004597489.1| - 0.051 13.2 0.9 0.15 11.7 0.7 1.8 1 0 0 1 1 1 0 Homeodomain-like domain DUF1724 PF08350.5 gi|336254382|ref|YP_004597489.1| - 0.069 12.6 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1724) HTH_26 PF13443.1 gi|336254382|ref|YP_004597489.1| - 0.14 12.3 0.0 0.26 11.5 0.0 1.4 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain Usp PF00582.21 gi|336254385|ref|YP_004597492.1| - 6.3e-14 52.3 3.7 9.7e-14 51.7 2.5 1.3 1 1 0 1 1 1 1 Universal stress protein family DUF4271 PF14093.1 gi|336254386|ref|YP_004597493.1| - 0.0016 18.1 2.6 0.0019 17.9 1.8 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4271) DUF1772 PF08592.6 gi|336254386|ref|YP_004597493.1| - 0.037 13.7 1.3 0.045 13.4 0.9 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1772) DUF2976 PF11190.3 gi|336254386|ref|YP_004597493.1| - 0.073 12.6 0.8 0.3 10.6 0.1 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF2976) SpoIIIAC PF06686.6 gi|336254386|ref|YP_004597493.1| - 0.097 12.4 0.4 0.33 10.7 0.0 2.1 2 1 0 2 2 2 0 Stage III sporulation protein AC/AD protein family PilX_N PF14341.1 gi|336254386|ref|YP_004597493.1| - 0.15 11.7 4.9 0.11 12.1 0.6 2.1 2 0 0 2 2 2 0 PilX N-terminal DUF4131 PF13567.1 gi|336254386|ref|YP_004597493.1| - 0.35 10.2 2.0 0.45 9.8 1.2 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) HTH_20 PF12840.2 gi|336254387|ref|YP_004597494.1| - 2.6e-07 30.3 0.5 4e-07 29.7 0.4 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|336254387|ref|YP_004597494.1| - 0.00014 21.2 0.0 0.00021 20.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|336254387|ref|YP_004597494.1| - 0.00019 21.0 0.1 0.00029 20.4 0.1 1.2 1 0 0 1 1 1 1 MarR family FUR PF01475.14 gi|336254387|ref|YP_004597494.1| - 0.00087 19.2 0.0 0.0011 18.9 0.0 1.2 1 0 0 1 1 1 1 Ferric uptake regulator family HTH_IclR PF09339.5 gi|336254387|ref|YP_004597494.1| - 0.0015 18.1 0.1 0.0023 17.4 0.1 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|336254387|ref|YP_004597494.1| - 0.008 15.8 0.0 0.011 15.3 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|336254387|ref|YP_004597494.1| - 0.015 14.9 0.0 0.025 14.2 0.0 1.3 1 0 0 1 1 1 0 HTH domain HTH_AsnC-type PF13404.1 gi|336254387|ref|YP_004597494.1| - 0.021 14.3 0.1 0.037 13.5 0.0 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain PadR PF03551.9 gi|336254387|ref|YP_004597494.1| - 0.028 14.1 0.0 0.037 13.7 0.0 1.4 1 1 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_5 PF01022.15 gi|336254387|ref|YP_004597494.1| - 0.052 13.2 0.0 0.083 12.5 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_27 PF13463.1 gi|336254387|ref|YP_004597494.1| - 0.093 13.0 0.0 0.14 12.4 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF457 PF04307.9 gi|336254388|ref|YP_004597495.1| - 7.3e-14 51.3 1.9 9.5e-14 51.0 1.3 1.2 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) Prenyltrans PF00432.16 gi|336254389|ref|YP_004597496.1| - 0.012 15.1 1.2 0.038 13.5 0.1 2.2 2 0 0 2 2 2 0 Prenyltransferase and squalene oxidase repeat DUF2334 PF10096.4 gi|336254389|ref|YP_004597496.1| - 0.046 13.1 0.0 0.071 12.5 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2334) RS4NT PF08071.7 gi|336254389|ref|YP_004597496.1| - 0.13 12.0 0.0 0.32 10.8 0.0 1.7 1 0 0 1 1 1 0 RS4NT (NUC023) domain DUF2036 PF09724.4 gi|336254391|ref|YP_004597498.1| - 0.06 12.4 0.0 0.08 12.0 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2036) 7tm_7 PF08395.7 gi|336254391|ref|YP_004597498.1| - 0.081 11.9 0.0 0.17 10.8 0.0 1.5 1 0 0 1 1 1 0 7tm Chemosensory receptor DUF354 PF04007.7 gi|336254392|ref|YP_004597499.1| - 3.1e-12 46.0 0.0 7.5e-12 44.7 0.0 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF354) Glyco_trans_4_4 PF13579.1 gi|336254392|ref|YP_004597499.1| - 0.00013 22.1 1.3 0.00013 22.1 0.9 2.1 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_28 PF03033.15 gi|336254392|ref|YP_004597499.1| - 0.0032 17.2 0.0 0.0077 15.9 0.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase family 28 N-terminal domain Paralemmin PF03285.10 gi|336254392|ref|YP_004597499.1| - 0.097 12.1 0.0 0.12 11.7 0.0 1.1 1 0 0 1 1 1 0 Paralemmin Glyco_hydro_76 PF03663.9 gi|336254393|ref|YP_004597500.1| - 8.7e-06 25.3 0.0 0.00092 18.6 0.0 2.7 2 1 0 2 2 2 1 Glycosyl hydrolase family 76 Prenyltrans_2 PF13249.1 gi|336254393|ref|YP_004597500.1| - 1.3e-05 25.6 0.0 0.00022 21.6 0.0 2.4 2 0 0 2 2 2 1 Prenyltransferase-like Prenyltrans_1 PF13243.1 gi|336254393|ref|YP_004597500.1| - 2.6e-05 24.1 0.5 0.013 15.5 0.0 3.7 1 1 3 4 4 4 2 Prenyltransferase-like Glyco_hydro_88 PF07470.8 gi|336254393|ref|YP_004597500.1| - 7.8e-05 21.8 0.7 0.00024 20.2 0.5 1.9 1 1 0 1 1 1 1 Glycosyl Hydrolase Family 88 Pec_lyase PF09492.5 gi|336254393|ref|YP_004597500.1| - 0.0007 18.8 0.1 0.029 13.5 0.0 2.2 1 1 1 2 2 2 1 Pectic acid lyase LANC_like PF05147.8 gi|336254393|ref|YP_004597500.1| - 0.0082 14.7 0.0 3.9 5.9 0.0 2.9 3 0 0 3 3 3 2 Lanthionine synthetase C-like protein Glycos_transf_1 PF00534.15 gi|336254394|ref|YP_004597501.1| - 3.5e-31 107.9 0.0 4.8e-31 107.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|336254394|ref|YP_004597501.1| - 9.7e-18 64.6 0.1 2.3e-17 63.4 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|336254394|ref|YP_004597501.1| - 2.2e-07 31.1 1.9 2.2e-07 31.1 1.3 2.2 2 1 1 3 3 3 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|336254394|ref|YP_004597501.1| - 4e-07 30.1 0.0 8.7e-07 29.1 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|336254394|ref|YP_004597501.1| - 3e-05 23.8 0.0 5.4e-05 22.9 0.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Acetyltransf_6 PF13480.1 gi|336254395|ref|YP_004597502.1| - 2.1e-19 69.9 0.0 3.9e-19 69.0 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FemAB PF02388.11 gi|336254395|ref|YP_004597502.1| - 0.0015 17.3 0.0 0.02 13.6 0.0 2.0 1 1 1 2 2 2 2 FemAB family Beta_helix PF13229.1 gi|336254396|ref|YP_004597503.1| - 0.064 13.0 12.1 0.23 11.2 8.4 1.9 1 1 0 1 1 1 0 Right handed beta helix region Polysacc_synt PF01943.12 gi|336254397|ref|YP_004597504.1| - 4.3e-27 95.0 11.6 4.3e-27 95.0 8.0 2.7 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|336254397|ref|YP_004597504.1| - 8e-19 67.8 18.0 8e-19 67.8 12.5 3.6 2 1 1 3 3 3 2 Polysaccharide biosynthesis C-terminal domain Polysacc_synt_3 PF13440.1 gi|336254397|ref|YP_004597504.1| - 1.6e-12 47.4 27.0 1.6e-12 47.4 18.7 3.6 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein MatE PF01554.13 gi|336254397|ref|YP_004597504.1| - 3.6e-08 33.1 1.2 3.6e-08 33.1 0.8 4.0 2 2 2 4 4 4 1 MatE MVIN PF03023.9 gi|336254397|ref|YP_004597504.1| - 0.0004 18.9 25.2 0.012 14.0 3.6 3.3 2 1 0 2 2 2 2 MviN-like protein TcdA_TcdB_pore PF12920.2 gi|336254397|ref|YP_004597504.1| - 7.9 4.2 6.8 13 3.5 4.7 1.2 1 0 0 1 1 1 0 TcdA/TcdB pore forming domain OppC_N PF12911.2 gi|336254398|ref|YP_004597505.1| - 0.62 9.4 3.9 11 5.4 0.0 3.5 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C DUF1616 PF07760.6 gi|336254399|ref|YP_004597506.1| - 1.4e-50 172.0 0.1 1.6e-50 171.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) GerA PF03323.8 gi|336254399|ref|YP_004597506.1| - 0.028 12.5 0.6 0.046 11.8 0.4 1.2 1 0 0 1 1 1 0 Bacillus/Clostridium GerA spore germination protein Acetyltransf_6 PF13480.1 gi|336254400|ref|YP_004597507.1| - 1.9e-19 69.9 0.0 4.2e-19 68.8 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FemAB PF02388.11 gi|336254400|ref|YP_004597507.1| - 1e-05 24.4 0.0 0.11 11.1 0.0 2.2 2 0 0 2 2 2 2 FemAB family RDD PF06271.7 gi|336254401|ref|YP_004597508.1| - 1.9e-24 86.1 0.7 2.1e-24 85.9 0.5 1.0 1 0 0 1 1 1 1 RDD family DUF1109 PF06532.6 gi|336254401|ref|YP_004597508.1| - 0.031 13.6 2.5 0.057 12.8 1.5 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1109) ODV-E18 PF10717.4 gi|336254401|ref|YP_004597508.1| - 0.037 13.4 0.3 0.76 9.2 0.0 2.2 2 0 0 2 2 2 0 Occlusion-derived virus envelope protein ODV-E18 NRPS PF08415.5 gi|336254401|ref|YP_004597508.1| - 0.11 12.3 0.0 0.18 11.5 0.0 1.4 1 0 0 1 1 1 0 Nonribosomal peptide synthase Phosphodiest PF01663.17 gi|336254402|ref|YP_004597509.1| - 2.2e-38 132.5 0.0 2.2e-37 129.2 0.0 2.0 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Zip PF02535.17 gi|336254403|ref|YP_004597510.1| - 1.8e-18 66.6 17.9 1.3e-17 63.7 4.4 3.0 1 1 0 2 2 2 2 ZIP Zinc transporter Phage_int_SAM_1 PF02899.12 gi|336254404|ref|YP_004597511.1| - 1.3e-05 25.2 0.1 1.3e-05 25.2 0.1 2.5 4 0 0 4 4 4 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.1 gi|336254404|ref|YP_004597511.1| - 0.00041 20.6 0.0 0.0014 18.9 0.0 1.8 1 1 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain DDE_Tnp_1_2 PF13586.1 gi|336254404|ref|YP_004597511.1| - 0.037 14.1 0.3 3.7 7.8 0.0 3.2 3 1 0 3 3 3 0 Transposase DDE domain Phage_integrase PF00589.17 gi|336254404|ref|YP_004597511.1| - 0.06 13.0 0.0 0.59 9.7 0.0 2.4 1 1 0 1 1 1 0 Phage integrase family Oxidored_q1 PF00361.15 gi|336254405|ref|YP_004597512.1| - 8e-35 120.3 12.2 8e-35 120.3 8.5 1.9 3 0 0 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1 PF00361.15 gi|336254406|ref|YP_004597513.1| - 1.2e-51 175.6 9.7 1.5e-50 172.0 6.7 2.2 1 1 0 1 1 1 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|336254406|ref|YP_004597513.1| - 0.0043 16.5 0.1 0.01 15.3 0.1 1.7 1 0 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q1 PF00361.15 gi|336254407|ref|YP_004597514.1| - 8.5e-50 169.5 2.0 8.5e-50 169.5 1.4 1.6 2 0 0 2 2 2 1 NADH-Ubiquinone/plastoquinone (complex I), various chains NADHdeh_related PF10125.4 gi|336254407|ref|YP_004597514.1| - 6.4e-05 22.2 6.0 6.4e-05 22.2 4.2 3.0 3 1 0 3 3 3 1 NADH dehydrogenase I, subunit N related protein Oxidored_q2 PF00420.19 gi|336254408|ref|YP_004597515.1| - 6.1e-24 83.4 3.3 7e-24 83.2 2.3 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ABC2_membrane_5 PF13346.1 gi|336254408|ref|YP_004597515.1| - 0.24 10.6 9.2 0.18 11.0 3.4 1.9 2 0 0 2 2 2 0 ABC-2 family transporter protein DUF3529 PF12046.3 gi|336254408|ref|YP_004597515.1| - 0.37 9.7 4.9 3.4 6.6 3.4 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF3529) UNC-50 PF05216.8 gi|336254408|ref|YP_004597515.1| - 1.1 8.3 5.3 1.5 7.9 3.7 1.2 1 0 0 1 1 1 0 UNC-50 family CD47 PF04549.9 gi|336254408|ref|YP_004597515.1| - 1.1 9.2 8.1 0.16 11.9 1.5 1.9 2 0 0 2 2 2 0 CD47 transmembrane region DUF3953 PF13129.1 gi|336254408|ref|YP_004597515.1| - 2.6 7.7 14.2 0.2 11.3 4.1 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF3953) DUF2108 PF09881.4 gi|336254408|ref|YP_004597515.1| - 8.5 6.2 9.7 3.6 7.4 4.2 2.2 1 1 1 2 2 2 0 Predicted membrane protein (DUF2108) MnhB PF04039.8 gi|336254409|ref|YP_004597516.1| - 3.5e-18 65.8 15.6 6.4e-18 64.9 10.8 1.4 1 1 0 1 1 1 1 Domain related to MnhB subunit of Na+/H+ antiporter Virul_fac_BrkB PF03631.10 gi|336254409|ref|YP_004597516.1| - 0.03 13.6 3.4 0.025 13.9 1.5 1.5 1 1 0 1 1 1 0 Virulence factor BrkB DUF998 PF06197.8 gi|336254409|ref|YP_004597516.1| - 0.48 9.7 11.5 2.4 7.4 8.0 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF998) DUF1469 PF07332.6 gi|336254409|ref|YP_004597516.1| - 8.9 6.0 10.9 23 4.7 4.4 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1469) DUF4040 PF13244.1 gi|336254410|ref|YP_004597517.1| - 1.4e-20 73.0 12.4 1.4e-20 73.0 8.6 2.7 3 0 0 3 3 3 1 Domain of unknown function (DUF4040) Virul_fac_BrkB PF03631.10 gi|336254410|ref|YP_004597517.1| - 0.24 10.7 16.6 0.031 13.6 7.8 2.1 1 1 1 2 2 2 0 Virulence factor BrkB DUF2108 PF09881.4 gi|336254410|ref|YP_004597517.1| - 3.4 7.5 18.1 0.37 10.6 7.7 2.5 3 0 0 3 3 3 0 Predicted membrane protein (DUF2108) PhaG_MnhG_YufB PF03334.9 gi|336254411|ref|YP_004597518.1| - 7.6e-25 86.7 8.1 9.6e-25 86.4 5.6 1.1 1 0 0 1 1 1 1 Na+/H+ antiporter subunit EI24 PF07264.6 gi|336254411|ref|YP_004597518.1| - 0.018 14.4 2.1 0.022 14.1 1.4 1.2 1 0 0 1 1 1 0 Etoposide-induced protein 2.4 (EI24) Amastin PF07344.6 gi|336254411|ref|YP_004597518.1| - 0.082 12.5 1.0 0.11 12.1 0.4 1.3 1 1 0 1 1 1 0 Amastin surface glycoprotein MrpF_PhaF PF04066.8 gi|336254412|ref|YP_004597519.1| - 5.2e-18 65.0 4.6 5.2e-18 65.0 3.2 1.8 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) PPE PF00823.14 gi|336254412|ref|YP_004597519.1| - 0.038 13.8 0.1 0.059 13.1 0.1 1.4 1 1 0 1 1 1 0 PPE family DUF4153 PF13687.1 gi|336254412|ref|YP_004597519.1| - 0.055 12.9 2.5 0.065 12.7 1.7 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4153) RskA PF10099.4 gi|336254412|ref|YP_004597519.1| - 0.28 10.9 2.5 0.33 10.6 1.7 1.2 1 0 0 1 1 1 0 Anti-sigma-K factor rskA 5TM-5TMR_LYT PF07694.7 gi|336254412|ref|YP_004597519.1| - 2 7.7 9.5 29 3.9 6.3 1.9 1 1 0 1 1 1 0 5TMR of 5TMR-LYT MNHE PF01899.11 gi|336254413|ref|YP_004597520.1| - 3.1e-32 111.3 3.0 4.5e-32 110.8 2.1 1.2 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit CbtB PF09489.5 gi|336254414|ref|YP_004597521.1| - 1.1e-12 47.6 3.3 1.2e-12 47.5 2.3 1.1 1 0 0 1 1 1 1 Probable cobalt transporter subunit (CbtB) CbtA PF09490.5 gi|336254415|ref|YP_004597522.1| - 1.8e-12 47.0 20.4 2.4e-12 46.6 14.1 1.1 1 0 0 1 1 1 1 Probable cobalt transporter subunit (CbtA) Zn_peptidase_2 PF04298.7 gi|336254415|ref|YP_004597522.1| - 0.16 11.3 4.5 0.055 12.8 0.9 1.8 2 0 0 2 2 2 0 Putative neutral zinc metallopeptidase Thiolase_N PF00108.18 gi|336254416|ref|YP_004597523.1| - 5.4e-80 268.1 0.0 8.6e-80 267.5 0.0 1.3 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.13 gi|336254416|ref|YP_004597523.1| - 1e-27 95.9 0.0 1.8e-27 95.2 0.0 1.4 1 0 0 1 1 1 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.21 gi|336254416|ref|YP_004597523.1| - 0.00017 21.1 0.4 0.00058 19.4 0.1 2.0 2 0 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III_C PF08541.5 gi|336254416|ref|YP_004597523.1| - 0.074 13.0 0.0 1.2 9.1 0.0 2.3 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DHO_dh PF01180.16 gi|336254418|ref|YP_004597525.1| - 7e-85 284.5 0.0 8.2e-85 284.3 0.0 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase NMO PF03060.10 gi|336254418|ref|YP_004597525.1| - 0.029 13.5 0.1 0.054 12.6 0.0 1.4 1 0 0 1 1 1 0 Nitronate monooxygenase zf-AN1 PF01428.11 gi|336254419|ref|YP_004597526.1| - 1.6e-12 47.0 3.7 2e-12 46.7 2.6 1.1 1 0 0 1 1 1 1 AN1-like Zinc finger DUF4187 PF13821.1 gi|336254419|ref|YP_004597526.1| - 0.17 11.4 3.7 0.14 11.7 1.8 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4187) Amidohydro_4 PF13147.1 gi|336254420|ref|YP_004597527.1| - 3.3e-32 112.6 1.9 4.8e-32 112.0 1.3 1.2 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|336254420|ref|YP_004597527.1| - 1.1e-18 68.0 0.0 1.8e-18 67.2 0.0 1.4 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|336254420|ref|YP_004597527.1| - 5.2e-18 64.6 1.3 6.6e-16 57.8 0.3 2.7 2 0 0 2 2 2 2 Amidohydrolase Amidohydro_3 PF07969.6 gi|336254420|ref|YP_004597527.1| - 1.5e-09 37.5 1.6 7e-06 25.5 0.4 3.2 1 1 1 2 2 2 2 Amidohydrolase family Urease_alpha PF00449.15 gi|336254420|ref|YP_004597527.1| - 0.023 14.8 0.4 0.29 11.2 0.2 2.3 2 0 0 2 2 2 0 Urease alpha-subunit, N-terminal domain Epimerase PF01370.16 gi|336254421|ref|YP_004597528.1| - 3.9e-59 199.9 0.0 4.8e-59 199.6 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|336254421|ref|YP_004597528.1| - 1.9e-19 69.4 0.0 3.9e-19 68.4 0.0 1.5 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|336254421|ref|YP_004597528.1| - 3.8e-19 68.6 0.0 4.1e-18 65.2 0.0 2.4 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.12 gi|336254421|ref|YP_004597528.1| - 4.1e-15 55.4 0.0 5.2e-15 55.0 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.7 gi|336254421|ref|YP_004597528.1| - 7.5e-12 44.7 0.1 2.3e-09 36.5 0.1 2.2 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.1 gi|336254421|ref|YP_004597528.1| - 4.2e-09 36.6 0.4 8.5e-09 35.6 0.3 1.5 1 1 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|336254421|ref|YP_004597528.1| - 1.3e-05 25.1 1.5 1.3e-05 25.1 1.0 2.1 2 1 0 2 2 2 1 short chain dehydrogenase Epimerase_Csub PF13950.1 gi|336254421|ref|YP_004597528.1| - 1.7e-05 24.6 0.0 3.2e-05 23.7 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose 4-epimerase C-term subunit NmrA PF05368.8 gi|336254421|ref|YP_004597528.1| - 0.0013 18.0 0.0 0.0044 16.2 0.0 1.8 2 0 0 2 2 2 1 NmrA-like family TrkA_N PF02254.13 gi|336254421|ref|YP_004597528.1| - 0.0051 16.7 0.0 0.023 14.6 0.0 2.0 1 1 0 1 1 1 1 TrkA-N domain KR PF08659.5 gi|336254421|ref|YP_004597528.1| - 0.0065 16.1 1.5 0.18 11.4 1.0 2.5 1 1 0 1 1 1 1 KR domain Kelch_4 PF13418.1 gi|336254421|ref|YP_004597528.1| - 0.14 11.9 0.0 0.25 11.1 0.0 1.4 1 0 0 1 1 1 0 Galactose oxidase, central domain Na_Ca_ex PF01699.19 gi|336254422|ref|YP_004597529.1| - 1.3 8.5 14.9 6.3 6.4 10.0 2.0 1 1 1 2 2 2 0 Sodium/calcium exchanger protein HTH_IclR PF09339.5 gi|336254423|ref|YP_004597530.1| - 9.2e-05 21.9 0.0 0.00016 21.1 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|336254423|ref|YP_004597530.1| - 0.00034 19.9 0.1 0.00056 19.2 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|336254423|ref|YP_004597530.1| - 0.0038 16.8 0.1 0.0066 16.1 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|336254423|ref|YP_004597530.1| - 0.0094 15.6 0.0 0.016 14.9 0.0 1.3 1 0 0 1 1 1 1 MarR family EAP30 PF04157.11 gi|336254423|ref|YP_004597530.1| - 0.089 11.9 0.1 0.11 11.5 0.0 1.1 1 0 0 1 1 1 0 EAP30/Vps36 family Fn3-like PF14310.1 gi|336254424|ref|YP_004597531.1| - 0.0043 16.9 0.1 0.099 12.5 0.0 2.7 2 0 0 2 2 2 1 Fibronectin type III-like domain Transglut_C PF00927.17 gi|336254424|ref|YP_004597531.1| - 0.02 14.9 0.0 0.051 13.6 0.0 1.6 1 0 0 1 1 1 0 Transglutaminase family, C-terminal ig like domain Exo5 PF09810.4 gi|336254425|ref|YP_004597532.1| - 0.0098 15.1 0.0 0.012 14.8 0.0 1.1 1 0 0 1 1 1 1 Exonuclease V - a 5' deoxyribonuclease HTH_20 PF12840.2 gi|336254425|ref|YP_004597532.1| - 0.019 14.7 0.0 0.15 11.8 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain zf-DNL PF05180.7 gi|336254426|ref|YP_004597533.1| - 0.0056 16.3 0.8 0.0066 16.1 0.6 1.1 1 0 0 1 1 1 1 DNL zinc finger HypA PF01155.14 gi|336254426|ref|YP_004597533.1| - 0.011 15.3 0.3 0.012 15.2 0.2 1.0 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Zn-ribbon_8 PF09723.5 gi|336254426|ref|YP_004597533.1| - 0.018 15.0 0.2 2 8.4 0.0 2.1 2 0 0 2 2 2 0 Zinc ribbon domain DUF164 PF02591.10 gi|336254426|ref|YP_004597533.1| - 0.044 13.6 0.7 0.055 13.3 0.5 1.2 1 0 0 1 1 1 0 Putative zinc ribbon domain DZR PF12773.2 gi|336254426|ref|YP_004597533.1| - 0.063 13.1 1.5 0.13 12.0 1.0 1.6 1 1 0 1 1 1 0 Double zinc ribbon DUF3268 PF11672.3 gi|336254426|ref|YP_004597533.1| - 0.093 12.8 0.3 0.11 12.5 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3268) DUF35_N PF12172.3 gi|336254426|ref|YP_004597533.1| - 0.11 12.4 4.6 0.17 11.8 0.5 2.1 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) RNHCP PF12647.2 gi|336254426|ref|YP_004597533.1| - 0.26 11.1 1.5 0.46 10.3 1.1 1.5 1 1 0 1 1 1 0 RNHCP domain Prok-RING_1 PF14446.1 gi|336254426|ref|YP_004597533.1| - 0.31 10.8 2.2 3 7.6 1.6 2.0 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 zinc_ribbon_2 PF13240.1 gi|336254426|ref|YP_004597533.1| - 0.75 9.3 3.7 3.2 7.3 2.5 2.0 1 1 0 1 1 1 0 zinc-ribbon domain zf-LITAF-like PF10601.4 gi|336254426|ref|YP_004597533.1| - 1.2 9.0 3.8 5.6 6.8 0.1 2.1 1 1 1 2 2 2 0 LITAF-like zinc ribbon domain HTH_20 PF12840.2 gi|336254428|ref|YP_004597535.1| - 2.1e-06 27.4 0.0 3.7e-06 26.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|336254428|ref|YP_004597535.1| - 0.00092 19.4 0.1 0.0015 18.7 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|336254428|ref|YP_004597535.1| - 0.0022 17.6 0.0 0.0033 17.0 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|336254428|ref|YP_004597535.1| - 0.0028 17.2 0.2 0.0052 16.4 0.1 1.4 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.2 gi|336254428|ref|YP_004597535.1| - 0.0042 16.7 0.0 0.0085 15.7 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|336254428|ref|YP_004597535.1| - 0.0078 15.8 0.0 0.012 15.2 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|336254428|ref|YP_004597535.1| - 0.012 14.9 0.1 0.02 14.2 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|336254428|ref|YP_004597535.1| - 0.026 14.0 0.0 0.042 13.4 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|336254428|ref|YP_004597535.1| - 0.048 13.2 0.1 0.091 12.3 0.0 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain TFIIE_alpha PF02002.12 gi|336254428|ref|YP_004597535.1| - 0.063 12.7 0.0 0.08 12.4 0.0 1.1 1 0 0 1 1 1 0 TFIIE alpha subunit FUR PF01475.14 gi|336254428|ref|YP_004597535.1| - 0.14 12.0 0.0 0.18 11.7 0.0 1.3 1 0 0 1 1 1 0 Ferric uptake regulator family PadR PF03551.9 gi|336254429|ref|YP_004597536.1| - 8.8e-14 51.0 0.3 1e-13 50.8 0.2 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|336254429|ref|YP_004597536.1| - 0.00025 21.3 0.0 0.00033 20.9 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|336254429|ref|YP_004597536.1| - 0.002 17.8 0.1 0.0027 17.4 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_34 PF13601.1 gi|336254429|ref|YP_004597536.1| - 0.0046 16.9 0.0 0.006 16.5 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF1495 PF07381.6 gi|336254429|ref|YP_004597536.1| - 0.12 12.0 0.1 0.15 11.7 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) MotA_activ PF09114.5 gi|336254429|ref|YP_004597536.1| - 0.14 11.8 0.0 0.16 11.7 0.0 1.2 1 0 0 1 1 1 0 Transcription factor MotA, activation domain DUF1616 PF07760.6 gi|336254430|ref|YP_004597537.1| - 1.7e-49 168.4 0.0 2.1e-49 168.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) CRISPR_Cse2 PF09485.5 gi|336254431|ref|YP_004597538.1| - 0.0012 18.9 0.9 0.017 15.1 0.1 2.1 2 0 0 2 2 2 2 CRISPR-associated protein Cse2 (CRISPR_cse2) Hexapep PF00132.19 gi|336254432|ref|YP_004597539.1| - 2.4e-30 102.6 16.3 2.4e-10 39.4 0.2 5.2 5 0 0 5 5 5 5 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|336254432|ref|YP_004597539.1| - 7e-20 70.2 10.8 3.9e-08 32.7 0.3 4.7 4 1 1 5 5 5 5 Hexapeptide repeat of succinyl-transferase DegT_DnrJ_EryC1 PF01041.12 gi|336254433|ref|YP_004597540.1| - 8.7e-127 423.1 0.2 9.9e-127 422.9 0.1 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.16 gi|336254433|ref|YP_004597540.1| - 1.4e-08 34.1 0.0 2.1e-08 33.5 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|336254433|ref|YP_004597540.1| - 1.4e-06 27.7 0.0 2.8e-06 26.6 0.0 1.5 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.14 gi|336254433|ref|YP_004597540.1| - 1.1e-05 24.3 0.0 3e-05 22.9 0.0 1.6 2 0 0 2 2 2 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|336254433|ref|YP_004597540.1| - 0.0062 14.8 0.0 0.012 13.9 0.0 1.4 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme GFO_IDH_MocA PF01408.17 gi|336254434|ref|YP_004597541.1| - 3.3e-27 95.3 0.3 6.2e-27 94.5 0.2 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold 2-Hacid_dh_C PF02826.14 gi|336254434|ref|YP_004597541.1| - 2.7e-07 29.8 0.0 6.1e-07 28.7 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|336254434|ref|YP_004597541.1| - 1.8e-06 28.2 0.0 5e-06 26.8 0.0 1.8 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|336254434|ref|YP_004597541.1| - 6.4e-06 26.1 0.3 0.0002 21.2 0.0 2.4 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase Semialdhyde_dh PF01118.19 gi|336254434|ref|YP_004597541.1| - 2.3e-05 24.7 0.1 5e-05 23.5 0.1 1.6 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain IlvN PF07991.7 gi|336254434|ref|YP_004597541.1| - 0.00012 21.4 0.0 0.00026 20.4 0.0 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain OCD_Mu_crystall PF02423.10 gi|336254434|ref|YP_004597541.1| - 0.0019 16.9 0.1 0.0043 15.8 0.0 1.6 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family DapB_N PF01113.15 gi|336254434|ref|YP_004597541.1| - 0.0021 17.9 0.4 0.005 16.7 0.3 1.7 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Shikimate_DH PF01488.15 gi|336254434|ref|YP_004597541.1| - 0.014 15.4 0.3 0.031 14.3 0.0 1.7 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase Saccharop_dh PF03435.13 gi|336254434|ref|YP_004597541.1| - 0.057 12.4 0.4 0.091 11.7 0.3 1.3 1 0 0 1 1 1 0 Saccharopine dehydrogenase UDPG_MGDP_dh_N PF03721.9 gi|336254435|ref|YP_004597542.1| - 4.7e-41 140.1 0.1 8e-41 139.4 0.0 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh_C PF03720.10 gi|336254435|ref|YP_004597542.1| - 9.7e-20 70.7 0.0 3.6e-19 68.8 0.0 2.0 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain UDPG_MGDP_dh PF00984.14 gi|336254435|ref|YP_004597542.1| - 3.7e-16 59.1 0.0 7.9e-16 58.0 0.0 1.6 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain NAD_binding_2 PF03446.10 gi|336254435|ref|YP_004597542.1| - 6e-07 29.4 0.1 2.1e-06 27.7 0.1 1.9 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|336254435|ref|YP_004597542.1| - 8.6e-07 28.8 0.6 1.3e-05 25.0 0.1 2.5 3 0 0 3 3 3 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus TrkA_N PF02254.13 gi|336254435|ref|YP_004597542.1| - 0.00066 19.6 0.4 0.0038 17.1 0.3 2.4 1 0 0 1 1 1 1 TrkA-N domain 3HCDH_N PF02737.13 gi|336254435|ref|YP_004597542.1| - 0.0069 16.0 0.2 0.012 15.2 0.1 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Glycos_transf_2 PF00535.21 gi|336254436|ref|YP_004597543.1| - 1.5e-17 63.8 0.1 6.3e-17 61.7 0.0 1.9 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|336254436|ref|YP_004597543.1| - 1.1e-05 25.3 0.6 2.7e-05 24.1 0.4 1.6 1 1 0 1 1 1 1 Glycosyltransferase like family 2 zf-ribbon_3 PF13248.1 gi|336254437|ref|YP_004597544.1| - 9.4e-06 24.6 3.1 1.4e-05 24.0 2.1 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|336254437|ref|YP_004597544.1| - 3.1e-05 23.7 0.8 3.5e-05 23.5 0.5 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|336254437|ref|YP_004597544.1| - 4.8e-05 22.7 1.7 6.7e-05 22.2 1.1 1.2 1 0 0 1 1 1 1 zinc-ribbon domain TFIIS_C PF01096.13 gi|336254437|ref|YP_004597544.1| - 0.0022 17.5 0.3 1.7 8.3 0.0 2.2 2 0 0 2 2 2 2 Transcription factor S-II (TFIIS) Prok-RING_1 PF14446.1 gi|336254437|ref|YP_004597544.1| - 0.0051 16.5 2.7 0.0069 16.0 1.9 1.2 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 HypA PF01155.14 gi|336254437|ref|YP_004597544.1| - 0.0057 16.3 0.8 0.0074 15.9 0.5 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family UPF0547 PF10571.4 gi|336254437|ref|YP_004597544.1| - 0.02 14.5 0.9 0.032 13.9 0.7 1.3 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 OrfB_Zn_ribbon PF07282.6 gi|336254437|ref|YP_004597544.1| - 0.026 14.1 1.6 0.026 14.1 1.1 1.7 1 1 1 2 2 2 0 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.7 gi|336254437|ref|YP_004597544.1| - 0.047 13.0 2.2 0.74 9.1 0.0 2.3 1 1 1 2 2 2 0 TFIIB zinc-binding zf-ISL3 PF14690.1 gi|336254437|ref|YP_004597544.1| - 0.049 13.6 0.3 1.7 8.7 0.0 2.1 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 RNA_POL_M_15KD PF02150.11 gi|336254437|ref|YP_004597544.1| - 0.056 13.1 1.8 0.24 11.1 0.1 2.1 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit NRDD PF13597.1 gi|336254437|ref|YP_004597544.1| - 0.058 11.4 0.9 0.07 11.2 0.7 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase Lar_restr_allev PF14354.1 gi|336254437|ref|YP_004597544.1| - 0.061 13.6 1.8 2.6 8.4 0.1 2.2 1 1 1 2 2 2 0 Restriction alleviation protein Lar RE_MamI PF09567.5 gi|336254437|ref|YP_004597544.1| - 0.081 11.9 0.3 0.094 11.7 0.2 1.1 1 0 0 1 1 1 0 MamI restriction endonuclease Zn-ribbon_8 PF09723.5 gi|336254437|ref|YP_004597544.1| - 0.082 12.8 5.1 2.1 8.3 3.8 2.2 1 1 1 2 2 2 0 Zinc ribbon domain Ribosomal_L32p PF01783.18 gi|336254437|ref|YP_004597544.1| - 0.12 12.6 0.0 0.15 12.2 0.0 1.1 1 0 0 1 1 1 0 Ribosomal L32p protein family Zn_Tnp_IS1595 PF12760.2 gi|336254437|ref|YP_004597544.1| - 0.2 11.5 1.9 1.6 8.5 0.0 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Nudix_N_2 PF14803.1 gi|336254437|ref|YP_004597544.1| - 0.34 10.6 2.5 7.5 6.3 0.3 2.5 2 1 0 2 2 1 0 Nudix N-terminal Prim_Zn_Ribbon PF08273.7 gi|336254437|ref|YP_004597544.1| - 0.61 10.2 6.6 1.2 9.3 0.6 2.5 1 1 1 2 2 2 0 Zinc-binding domain of primase-helicase zf-RING_3 PF14369.1 gi|336254437|ref|YP_004597544.1| - 0.99 9.4 3.8 2.1 8.4 2.6 1.6 1 1 0 1 1 1 0 zinc-finger DUF35_N PF12172.3 gi|336254437|ref|YP_004597544.1| - 1 9.3 4.8 5.4 7.0 3.3 2.0 1 1 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Glycos_transf_1 PF00534.15 gi|336254438|ref|YP_004597545.1| - 2.3e-12 46.6 0.0 3.7e-12 45.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|336254438|ref|YP_004597545.1| - 9.1e-11 42.0 0.0 1.9e-10 41.0 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|336254438|ref|YP_004597545.1| - 1.1e-09 38.6 0.3 2.8e-09 37.3 0.0 1.8 1 1 1 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.1 gi|336254438|ref|YP_004597545.1| - 1.7e-05 24.6 0.0 5.4e-05 23.0 0.0 1.8 1 1 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.1 gi|336254438|ref|YP_004597545.1| - 0.0015 18.7 0.0 0.0031 17.7 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|336254438|ref|YP_004597545.1| - 0.0059 16.3 0.0 0.012 15.3 0.0 1.6 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Pilus_CpaD PF09476.5 gi|336254439|ref|YP_004597546.1| - 0.15 11.4 0.0 0.29 10.6 0.0 1.4 1 0 0 1 1 1 0 Pilus biogenesis CpaD protein (pilus_cpaD) Polysacc_synt_C PF14667.1 gi|336254440|ref|YP_004597547.1| - 0.0078 16.0 1.7 0.008 15.9 1.2 1.0 1 0 0 1 1 1 1 Polysaccharide biosynthesis C-terminal domain Bax1-I PF01027.15 gi|336254440|ref|YP_004597547.1| - 0.017 14.7 1.3 0.019 14.6 0.9 1.0 1 0 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 DUF1129 PF06570.6 gi|336254440|ref|YP_004597547.1| - 0.019 14.2 0.2 0.024 13.9 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) DUF2189 PF09955.4 gi|336254440|ref|YP_004597547.1| - 0.37 10.7 4.5 2.3 8.1 2.8 1.8 1 1 1 2 2 2 0 Predicted integral membrane protein (DUF2189) DUF4229 PF14012.1 gi|336254440|ref|YP_004597547.1| - 1.5 8.7 5.8 1.7 8.5 4.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4229) ADH_N PF08240.7 gi|336254441|ref|YP_004597548.1| - 9.7e-29 99.3 0.2 2.3e-28 98.1 0.1 1.6 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|336254441|ref|YP_004597548.1| - 1.4e-19 69.9 0.1 6.6e-16 58.0 0.0 2.2 2 0 0 2 2 2 2 Zinc-binding dehydrogenase ADH_N_assoc PF13823.1 gi|336254441|ref|YP_004597548.1| - 8.1e-10 38.1 0.4 1.9e-09 37.0 0.3 1.7 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-associated Methyltransf_18 PF12847.2 gi|336254441|ref|YP_004597548.1| - 0.00057 20.4 0.0 0.0012 19.4 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|336254441|ref|YP_004597548.1| - 0.038 13.5 0.0 0.062 12.8 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_11 PF08241.7 gi|336254441|ref|YP_004597548.1| - 0.064 13.7 0.0 0.26 11.7 0.0 2.0 1 1 0 1 1 1 0 Methyltransferase domain Epimerase PF01370.16 gi|336254442|ref|YP_004597549.1| - 2.1e-34 119.0 0.0 3.2e-34 118.4 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|336254442|ref|YP_004597549.1| - 1.1e-24 86.6 0.0 1.5e-24 86.2 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.1 gi|336254442|ref|YP_004597549.1| - 2.3e-23 83.1 0.1 3.8e-23 82.4 0.0 1.4 1 0 0 1 1 1 1 NADH(P)-binding NAD_binding_4 PF07993.7 gi|336254442|ref|YP_004597549.1| - 1.9e-21 76.1 0.0 2.7e-20 72.3 0.0 2.0 1 1 0 1 1 1 1 Male sterility protein RmlD_sub_bind PF04321.12 gi|336254442|ref|YP_004597549.1| - 2.7e-10 39.5 0.0 4.3e-10 38.9 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain NmrA PF05368.8 gi|336254442|ref|YP_004597549.1| - 2.8e-08 33.3 0.0 8.5e-08 31.7 0.0 1.8 2 0 0 2 2 2 1 NmrA-like family adh_short PF00106.20 gi|336254442|ref|YP_004597549.1| - 7.1e-08 32.5 0.5 1.5e-07 31.4 0.1 1.7 2 0 0 2 2 2 1 short chain dehydrogenase Polysacc_synt_2 PF02719.10 gi|336254442|ref|YP_004597549.1| - 2.9e-07 29.6 0.0 6.6e-07 28.5 0.0 1.6 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein KR PF08659.5 gi|336254442|ref|YP_004597549.1| - 0.019 14.6 0.1 0.038 13.6 0.1 1.6 1 1 0 1 1 1 0 KR domain TrkA_N PF02254.13 gi|336254442|ref|YP_004597549.1| - 0.039 13.9 0.0 0.1 12.5 0.0 1.7 1 1 0 2 2 2 0 TrkA-N domain Radical_SAM PF04055.16 gi|336254442|ref|YP_004597549.1| - 0.16 12.1 0.1 6.4 6.9 0.0 2.4 2 1 0 2 2 2 0 Radical SAM superfamily DUF362 PF04015.7 gi|336254443|ref|YP_004597550.1| - 7.8e-08 32.0 0.0 4.5e-07 29.5 0.0 1.9 1 1 0 1 1 1 1 Domain of unknown function (DUF362) GFO_IDH_MocA PF01408.17 gi|336254444|ref|YP_004597551.1| - 1.7e-25 89.8 0.6 3.4e-25 88.8 0.4 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|336254444|ref|YP_004597551.1| - 5.3e-10 39.0 0.1 2.3e-09 37.0 0.0 2.0 2 0 0 2 2 2 1 Oxidoreductase family, C-terminal alpha/beta domain Semialdhyde_dh PF01118.19 gi|336254444|ref|YP_004597551.1| - 0.00049 20.4 0.1 0.00077 19.7 0.1 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Saccharop_dh PF03435.13 gi|336254444|ref|YP_004597551.1| - 0.0058 15.6 0.5 0.0081 15.1 0.3 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase 2-Hacid_dh_C PF02826.14 gi|336254444|ref|YP_004597551.1| - 0.0072 15.4 0.1 0.042 13.0 0.0 2.1 1 1 1 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CoA_binding PF02629.14 gi|336254444|ref|YP_004597551.1| - 0.021 15.3 0.1 0.048 14.1 0.0 1.6 1 0 0 1 1 1 0 CoA binding domain Gp_dh_N PF00044.19 gi|336254444|ref|YP_004597551.1| - 0.12 12.3 0.0 0.21 11.5 0.0 1.4 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NAD_binding_3 PF03447.11 gi|336254444|ref|YP_004597551.1| - 0.13 12.6 1.6 0.31 11.4 1.1 1.7 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|336254444|ref|YP_004597551.1| - 0.4 11.1 1.9 0.33 11.3 0.2 1.7 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent Polysacc_deac_1 PF01522.16 gi|336254445|ref|YP_004597552.1| - 3.9e-07 29.7 0.0 8.7e-07 28.6 0.0 1.6 1 0 0 1 1 1 1 Polysaccharide deacetylase Phosphodiest PF01663.17 gi|336254446|ref|YP_004597553.1| - 7.4e-49 166.9 0.0 1.7e-48 165.8 0.0 1.5 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase OppC_N PF12911.2 gi|336254448|ref|YP_004597555.1| - 1 8.7 0.0 1 8.7 0.0 3.6 4 0 0 4 4 4 0 N-terminal TM domain of oligopeptide transport permease C NdhL PF10716.4 gi|336254448|ref|YP_004597555.1| - 2.5 7.9 9.2 0.1 12.3 0.4 3.0 2 1 1 3 3 3 0 NADH dehydrogenase transmembrane subunit CoA_transf_3 PF02515.12 gi|336254449|ref|YP_004597556.1| - 1.7e-63 213.3 0.1 2.3e-63 212.8 0.0 1.2 1 0 0 1 1 1 1 CoA-transferase family III PBAN PF05874.6 gi|336254449|ref|YP_004597556.1| - 0.047 13.0 0.0 0.076 12.3 0.0 1.2 1 0 0 1 1 1 0 Pheromone biosynthesis activating neuropeptide (PBAN) Acetyltransf_9 PF13527.1 gi|336254450|ref|YP_004597557.1| - 3.4e-22 78.6 0.1 1.6e-19 69.9 0.0 2.3 2 1 0 2 2 2 2 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|336254450|ref|YP_004597557.1| - 0.018 15.0 0.0 0.044 13.8 0.0 1.6 1 0 0 1 1 1 0 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|336254450|ref|YP_004597557.1| - 0.026 14.6 0.0 0.084 13.0 0.0 1.9 2 1 0 2 2 2 0 Acetyltransferase (GNAT) domain TFIIB PF00382.14 gi|336254453|ref|YP_004597560.1| - 2.8e-38 129.5 0.1 8.4e-20 70.3 0.0 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|336254453|ref|YP_004597560.1| - 9.8e-17 60.0 3.5 2e-16 58.9 2.5 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding Cyclin_N PF00134.18 gi|336254453|ref|YP_004597560.1| - 0.001 18.6 0.0 0.0034 16.9 0.0 1.8 2 0 0 2 2 2 1 Cyclin, N-terminal domain Ribosomal_S27e PF01667.12 gi|336254453|ref|YP_004597560.1| - 0.014 14.9 0.2 0.029 13.8 0.1 1.5 1 0 0 1 1 1 0 Ribosomal protein S27 DZR PF12773.2 gi|336254453|ref|YP_004597560.1| - 0.017 14.9 0.6 0.043 13.6 0.4 1.6 1 0 0 1 1 1 0 Double zinc ribbon A2L_zn_ribbon PF08792.5 gi|336254453|ref|YP_004597560.1| - 0.028 13.8 0.3 0.064 12.7 0.2 1.6 1 1 0 1 1 1 0 A2L zinc ribbon domain zf-ribbon_3 PF13248.1 gi|336254453|ref|YP_004597560.1| - 0.067 12.4 0.2 0.16 11.2 0.2 1.6 1 0 0 1 1 1 0 zinc-ribbon domain GATA PF00320.22 gi|336254453|ref|YP_004597560.1| - 0.21 10.9 3.1 11 5.4 0.0 3.1 3 0 0 3 3 3 0 GATA zinc finger Chlorosome_CsmC PF11098.3 gi|336254455|ref|YP_004597562.1| - 0.1 12.3 0.5 0.17 11.6 0.4 1.5 1 0 0 1 1 1 0 Chlorosome envelope protein C ResIII PF04851.10 gi|336254456|ref|YP_004597563.1| - 6.3e-13 48.9 0.0 3e-12 46.7 0.0 2.1 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit SNF2_N PF00176.18 gi|336254456|ref|YP_004597563.1| - 7.2e-13 47.9 0.0 9.9e-13 47.5 0.0 1.2 1 0 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C PF00271.26 gi|336254456|ref|YP_004597563.1| - 1.1e-11 44.3 0.1 2.3e-11 43.3 0.1 1.5 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|336254456|ref|YP_004597563.1| - 7.2e-09 35.3 0.0 2.7e-08 33.4 0.0 1.9 2 0 0 2 2 2 1 DEAD/DEAH box helicase AAA_19 PF13245.1 gi|336254456|ref|YP_004597563.1| - 9.1e-05 22.1 0.5 0.00032 20.3 0.0 2.2 2 0 0 2 2 2 1 Part of AAA domain AAA_25 PF13481.1 gi|336254456|ref|YP_004597563.1| - 0.00088 18.7 0.9 0.007 15.7 0.0 3.0 3 0 0 3 3 3 1 AAA domain AAA_33 PF13671.1 gi|336254456|ref|YP_004597563.1| - 0.0014 18.5 0.8 0.013 15.3 0.0 2.9 3 0 0 3 3 3 1 AAA domain MarR_2 PF12802.2 gi|336254456|ref|YP_004597563.1| - 0.002 17.7 0.8 0.0062 16.1 0.2 2.1 2 0 0 2 2 2 1 MarR family Helicase_C_3 PF13625.1 gi|336254456|ref|YP_004597563.1| - 0.006 16.3 0.0 0.015 15.0 0.0 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain AAA_22 PF13401.1 gi|336254456|ref|YP_004597563.1| - 0.0081 16.3 0.1 0.15 12.1 0.0 3.0 2 1 0 2 2 2 1 AAA domain TrmB PF01978.14 gi|336254456|ref|YP_004597563.1| - 0.12 12.1 0.1 1.1 8.9 0.0 2.3 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB AAA PF00004.24 gi|336254456|ref|YP_004597563.1| - 0.12 12.5 0.0 0.28 11.3 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DUF2502 PF10697.4 gi|336254456|ref|YP_004597563.1| - 1.3 9.1 5.3 1.7 8.8 0.4 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2502) Amidohydro_5 PF13594.1 gi|336254457|ref|YP_004597564.1| - 0.092 12.5 0.1 0.17 11.7 0.0 1.4 1 1 0 1 1 1 0 Amidohydrolase AAA_10 PF12846.2 gi|336254458|ref|YP_004597565.1| - 1.1e-18 67.7 6.2 1.8e-09 37.4 0.0 3.1 2 1 0 3 3 2 2 AAA-like domain DUF87 PF01935.12 gi|336254458|ref|YP_004597565.1| - 1.1e-10 41.7 0.0 1.1e-10 41.7 0.0 2.7 2 1 0 2 2 1 1 Domain of unknown function DUF87 SlyX PF04102.7 gi|336254458|ref|YP_004597565.1| - 4.2e-06 27.0 16.4 7.3e-05 23.0 3.1 2.9 2 0 0 2 2 2 2 SlyX DUF853 PF05872.7 gi|336254458|ref|YP_004597565.1| - 4.6e-06 25.2 0.1 0.00044 18.7 0.0 2.4 2 1 0 2 2 2 1 Bacterial protein of unknown function (DUF853) TMF_DNA_bd PF12329.3 gi|336254458|ref|YP_004597565.1| - 0.0012 18.5 4.7 0.0012 18.5 3.3 3.0 3 0 0 3 3 2 1 TATA element modulatory factor 1 DNA binding AAA_17 PF13207.1 gi|336254458|ref|YP_004597565.1| - 0.0013 19.5 0.0 0.0013 19.5 0.0 2.9 2 1 0 2 2 1 1 AAA domain CbiA PF01656.18 gi|336254458|ref|YP_004597565.1| - 0.0016 17.8 0.2 0.0051 16.2 0.0 2.0 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain APS_kinase PF01583.15 gi|336254458|ref|YP_004597565.1| - 0.0034 17.0 0.1 0.011 15.3 0.0 1.9 2 0 0 2 2 1 1 Adenylylsulphate kinase MobB PF03205.9 gi|336254458|ref|YP_004597565.1| - 0.0041 16.8 0.0 0.011 15.4 0.0 1.7 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA PF00004.24 gi|336254458|ref|YP_004597565.1| - 0.0084 16.3 0.0 0.059 13.5 0.0 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) ATG16 PF08614.6 gi|336254458|ref|YP_004597565.1| - 0.014 15.2 32.7 0.022 14.5 6.1 3.0 2 1 1 3 3 3 0 Autophagy protein 16 (ATG16) Med9 PF07544.8 gi|336254458|ref|YP_004597565.1| - 0.036 13.7 15.9 0.13 12.0 1.5 3.0 2 1 0 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 AAA_22 PF13401.1 gi|336254458|ref|YP_004597565.1| - 0.042 14.0 0.8 0.12 12.5 0.0 2.1 2 2 0 2 2 1 0 AAA domain AAA_18 PF13238.1 gi|336254458|ref|YP_004597565.1| - 0.05 13.9 0.0 0.05 13.9 0.0 2.7 3 0 0 3 3 2 0 AAA domain Zot PF05707.7 gi|336254458|ref|YP_004597565.1| - 0.051 13.0 0.0 5.5 6.4 0.0 2.3 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) FlaC_arch PF05377.6 gi|336254458|ref|YP_004597565.1| - 0.052 13.4 8.5 0.77 9.6 0.3 2.7 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) AAA_19 PF13245.1 gi|336254458|ref|YP_004597565.1| - 0.059 13.1 0.0 0.28 10.9 0.0 2.2 1 0 0 1 1 1 0 Part of AAA domain FtsK_SpoIIIE PF01580.13 gi|336254458|ref|YP_004597565.1| - 0.2 11.0 1.9 1.1 8.6 0.0 2.5 3 0 0 3 3 2 0 FtsK/SpoIIIE family Sec34 PF04136.10 gi|336254458|ref|YP_004597565.1| - 0.33 10.6 5.6 0.84 9.3 0.3 2.3 2 0 0 2 2 2 0 Sec34-like family IncA PF04156.9 gi|336254458|ref|YP_004597565.1| - 0.37 10.3 37.0 0.24 10.9 7.8 3.1 2 1 1 3 3 3 0 IncA protein CENP-F_leu_zip PF10473.4 gi|336254458|ref|YP_004597565.1| - 0.4 10.5 27.9 12 5.7 19.4 2.6 1 1 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Baculo_PEP_C PF04513.7 gi|336254458|ref|YP_004597565.1| - 0.43 10.3 2.2 6.1 6.6 0.1 2.5 2 0 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus Med4 PF10018.4 gi|336254458|ref|YP_004597565.1| - 0.76 9.1 17.1 0.07 12.5 2.0 2.9 3 0 0 3 3 2 0 Vitamin-D-receptor interacting Mediator subunit 4 DUF4407 PF14362.1 gi|336254458|ref|YP_004597565.1| - 0.76 8.6 8.8 1.7 7.5 6.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) Phage_GP20 PF06810.6 gi|336254458|ref|YP_004597565.1| - 0.91 8.9 16.5 0.07 12.5 2.2 2.5 1 1 1 2 2 2 0 Phage minor structural protein GP20 ArsA_ATPase PF02374.10 gi|336254458|ref|YP_004597565.1| - 1.2 8.1 5.0 0.24 10.4 0.1 2.1 2 1 0 2 2 2 0 Anion-transporting ATPase FemAB PF02388.11 gi|336254458|ref|YP_004597565.1| - 1.2 7.7 5.1 4.5 5.8 0.1 2.2 2 0 0 2 2 2 0 FemAB family DUF2570 PF10828.3 gi|336254458|ref|YP_004597565.1| - 1.5 8.4 4.9 0.46 10.1 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2570) Reo_sigmaC PF04582.7 gi|336254458|ref|YP_004597565.1| - 1.5 7.8 3.9 37 3.3 2.8 2.0 1 1 0 1 1 1 0 Reovirus sigma C capsid protein DivIVA PF05103.8 gi|336254458|ref|YP_004597565.1| - 1.8 8.6 21.6 0.17 11.9 1.7 2.9 3 0 0 3 3 2 0 DivIVA protein Fib_alpha PF08702.5 gi|336254458|ref|YP_004597565.1| - 2.2 8.3 9.0 0.29 11.2 2.7 2.1 2 1 1 3 3 2 0 Fibrinogen alpha/beta chain family Prefoldin_2 PF01920.15 gi|336254458|ref|YP_004597565.1| - 2.5 7.9 23.5 2.5 7.8 6.2 3.2 2 1 1 3 3 3 0 Prefoldin subunit AAA_13 PF13166.1 gi|336254458|ref|YP_004597565.1| - 3 6.1 14.8 24 3.2 10.4 2.0 1 1 0 1 1 1 0 AAA domain GAS PF13851.1 gi|336254458|ref|YP_004597565.1| - 3.5 6.7 21.0 1.6 7.8 5.0 2.4 1 1 1 2 2 2 0 Growth-arrest specific micro-tubule binding COG2 PF06148.6 gi|336254458|ref|YP_004597565.1| - 4.3 7.2 11.7 7.8 6.3 1.3 2.6 2 0 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 V_ATPase_I PF01496.14 gi|336254458|ref|YP_004597565.1| - 4.6 4.9 14.6 18 2.9 10.0 1.9 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family PilO PF04350.8 gi|336254458|ref|YP_004597565.1| - 4.8 7.0 7.2 59 3.5 1.1 3.2 2 1 1 3 3 3 0 Pilus assembly protein, PilO Prefoldin PF02996.12 gi|336254458|ref|YP_004597565.1| - 5.1 6.7 14.8 7.8 6.1 2.5 3.2 2 1 1 3 3 3 0 Prefoldin subunit ADIP PF11559.3 gi|336254458|ref|YP_004597565.1| - 5.3 6.9 20.1 8 6.3 5.2 2.7 1 1 1 2 2 2 0 Afadin- and alpha -actinin-Binding CASP_C PF08172.7 gi|336254458|ref|YP_004597565.1| - 8.8 5.2 16.7 52 2.7 11.4 2.1 1 1 0 1 1 1 0 CASP C terminal DUF456 PF04306.8 gi|336254459|ref|YP_004597566.1| - 0.016 15.2 0.4 0.019 15.0 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF456) HPP PF04982.8 gi|336254459|ref|YP_004597566.1| - 0.075 12.8 0.1 0.078 12.8 0.1 1.0 1 0 0 1 1 1 0 HPP family Gly-zipper_OmpA PF13436.1 gi|336254459|ref|YP_004597566.1| - 0.18 11.5 0.6 0.19 11.3 0.4 1.1 1 0 0 1 1 1 0 Glycine-zipper containing OmpA-like membrane domain DUF2955 PF11168.3 gi|336254459|ref|YP_004597566.1| - 0.25 11.0 1.3 0.72 9.5 0.3 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2955) TAT_signal PF10518.4 gi|336254459|ref|YP_004597566.1| - 5.1 7.3 14.4 1 9.5 1.9 2.1 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence DegT_DnrJ_EryC1 PF01041.12 gi|336254460|ref|YP_004597567.1| - 1.3e-17 63.8 0.0 1.8e-15 56.8 0.0 2.1 2 0 0 2 2 2 2 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.16 gi|336254460|ref|YP_004597567.1| - 0.00027 20.0 0.0 0.00048 19.1 0.0 1.3 1 1 0 1 1 1 1 Aminotransferase class I and II Phosphodiest PF01663.17 gi|336254461|ref|YP_004597568.1| - 7.8e-37 127.4 0.0 4.2e-34 118.4 0.0 2.0 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase Acetyltransf_6 PF13480.1 gi|336254462|ref|YP_004597569.1| - 3.2e-18 66.0 1.0 5.5e-18 65.2 0.0 1.9 3 0 0 3 3 3 1 Acetyltransferase (GNAT) domain FemAB PF02388.11 gi|336254462|ref|YP_004597569.1| - 9.3e-09 34.4 0.0 6.9e-06 24.9 0.0 2.1 2 0 0 2 2 2 2 FemAB family bPH_2 PF03703.9 gi|336254463|ref|YP_004597570.1| - 0.0051 16.7 0.2 0.01 15.8 0.1 1.4 1 0 0 1 1 1 1 Bacterial PH domain MarR PF01047.17 gi|336254464|ref|YP_004597571.1| - 0.00029 20.4 0.0 0.00041 20.0 0.0 1.2 1 0 0 1 1 1 1 MarR family TFIIE_alpha PF02002.12 gi|336254464|ref|YP_004597571.1| - 0.00047 19.6 0.0 0.00058 19.3 0.0 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit MarR_2 PF12802.2 gi|336254464|ref|YP_004597571.1| - 0.0021 17.7 0.1 0.0027 17.3 0.0 1.2 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|336254464|ref|YP_004597571.1| - 0.0047 16.6 0.1 0.0066 16.1 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|336254464|ref|YP_004597571.1| - 0.026 13.9 0.0 0.043 13.1 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|336254464|ref|YP_004597571.1| - 0.03 14.1 0.0 0.044 13.5 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_36 PF13730.1 gi|336254464|ref|YP_004597571.1| - 0.035 14.2 0.0 0.065 13.3 0.0 1.5 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|336254464|ref|YP_004597571.1| - 0.055 13.2 0.0 0.075 12.8 0.0 1.2 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain DUF2582 PF10771.4 gi|336254464|ref|YP_004597571.1| - 0.089 12.6 0.0 0.13 12.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2582) PGM_PMM_I PF02878.11 gi|336254465|ref|YP_004597572.1| - 1.3e-33 115.3 0.0 3.8e-33 113.8 0.0 1.8 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|336254465|ref|YP_004597572.1| - 4.7e-21 75.0 2.7 6.8e-21 74.5 0.1 2.5 3 0 0 3 3 3 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.11 gi|336254465|ref|YP_004597572.1| - 1.8e-20 73.0 0.0 3.4e-20 72.1 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.15 gi|336254465|ref|YP_004597572.1| - 3.1e-13 49.5 0.4 1.1e-12 47.8 0.3 1.9 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain UPF0146 PF03686.8 gi|336254465|ref|YP_004597572.1| - 0.46 10.2 3.8 15 5.4 0.0 3.6 3 1 1 4 4 4 0 Uncharacterised protein family (UPF0146) Zn-ribbon_8 PF09723.5 gi|336254466|ref|YP_004597573.1| - 0.0034 17.2 0.5 0.65 10.0 0.1 2.2 2 0 0 2 2 2 2 Zinc ribbon domain Nudix_N_2 PF14803.1 gi|336254466|ref|YP_004597573.1| - 0.04 13.6 1.0 0.14 11.8 0.7 1.9 1 1 0 1 1 1 0 Nudix N-terminal Arv1 PF04161.8 gi|336254466|ref|YP_004597573.1| - 0.051 13.4 0.2 0.06 13.2 0.2 1.1 1 0 0 1 1 1 0 Arv1-like family DZR PF12773.2 gi|336254466|ref|YP_004597573.1| - 0.053 13.3 1.9 0.11 12.3 1.3 1.6 1 1 0 1 1 1 0 Double zinc ribbon zf-RING_3 PF14369.1 gi|336254466|ref|YP_004597573.1| - 0.062 13.3 1.3 4.1 7.4 0.1 2.3 2 0 0 2 2 2 0 zinc-finger FdhE PF04216.7 gi|336254466|ref|YP_004597573.1| - 0.085 12.5 0.2 0.092 12.4 0.1 1.0 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation RecR PF02132.10 gi|336254466|ref|YP_004597573.1| - 0.11 11.9 2.0 0.52 9.7 0.0 2.1 1 1 1 2 2 2 0 RecR protein PolC_DP2 PF03833.8 gi|336254466|ref|YP_004597573.1| - 0.17 9.5 0.3 0.17 9.5 0.2 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 zf-LITAF-like PF10601.4 gi|336254466|ref|YP_004597573.1| - 0.18 11.7 4.9 0.35 10.7 0.2 2.1 1 1 0 2 2 2 0 LITAF-like zinc ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|336254466|ref|YP_004597573.1| - 0.52 10.1 3.3 5.8 6.8 2.4 2.0 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Prok-RING_1 PF14446.1 gi|336254466|ref|YP_004597573.1| - 1 9.1 3.8 10 5.9 2.6 2.0 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 NTP_transferase PF00483.18 gi|336254467|ref|YP_004597574.1| - 1.1e-36 126.4 0.0 2.4e-36 125.2 0.0 1.5 2 0 0 2 2 2 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|336254467|ref|YP_004597574.1| - 3e-15 56.6 0.2 4.6e-15 56.0 0.1 1.4 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.19 gi|336254467|ref|YP_004597574.1| - 2.6e-13 48.7 9.2 0.00014 21.1 0.2 4.4 3 1 1 4 4 4 3 Bacterial transferase hexapeptide (six repeats) IspD PF01128.14 gi|336254467|ref|YP_004597574.1| - 0.0014 18.2 0.0 0.002 17.6 0.0 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Glyco_tranf_2_3 PF13641.1 gi|336254467|ref|YP_004597574.1| - 0.018 14.8 0.5 0.03 14.1 0.3 1.3 1 0 0 1 1 1 0 Glycosyltransferase like family 2 Hexapep_2 PF14602.1 gi|336254467|ref|YP_004597574.1| - 0.041 13.4 6.8 1.8 8.1 0.2 3.9 4 1 0 4 4 4 0 Hexapeptide repeat of succinyl-transferase SIS PF01380.17 gi|336254468|ref|YP_004597575.1| - 6.6e-50 168.0 0.0 4.3e-24 84.5 0.5 2.8 3 0 0 3 3 3 2 SIS domain GATase_2 PF00310.16 gi|336254468|ref|YP_004597575.1| - 3.2e-25 88.5 0.0 9.3e-19 67.3 0.0 2.6 1 1 1 2 2 2 2 Glutamine amidotransferases class-II GATase_6 PF13522.1 gi|336254468|ref|YP_004597575.1| - 5e-25 88.0 0.2 3.6e-24 85.2 0.0 2.2 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_7 PF13537.1 gi|336254468|ref|YP_004597575.1| - 1.4e-19 70.0 0.0 3.2e-19 68.8 0.0 1.7 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.1 gi|336254468|ref|YP_004597575.1| - 0.00011 20.9 0.0 0.00018 20.2 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II SIS_2 PF13580.1 gi|336254468|ref|YP_004597575.1| - 0.099 12.3 0.1 2.2 7.9 0.0 2.6 2 0 0 2 2 2 0 SIS domain Na_H_Exchanger PF00999.16 gi|336254469|ref|YP_004597576.1| - 2.1e-49 168.0 52.3 2.7e-49 167.7 36.2 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Usp PF00582.21 gi|336254469|ref|YP_004597576.1| - 7.6e-16 58.5 2.7 7.6e-16 58.5 1.9 2.4 2 0 0 2 2 2 1 Universal stress protein family TMEM154 PF15102.1 gi|336254470|ref|YP_004597577.1| - 0.9 9.2 4.0 0.96 9.1 2.8 1.1 1 0 0 1 1 1 0 TMEM154 protein family HTH_10 PF04967.7 gi|336254471|ref|YP_004597578.1| - 1.7e-18 65.9 0.0 2.9e-18 65.1 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.11 gi|336254471|ref|YP_004597578.1| - 2.8e-07 29.7 0.1 8.2e-07 28.2 0.1 1.8 1 0 0 1 1 1 1 Sigma-70, region 4 MarR_2 PF12802.2 gi|336254471|ref|YP_004597578.1| - 1.8e-06 27.4 0.0 4.7e-06 26.1 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|336254471|ref|YP_004597578.1| - 3.5e-06 26.3 0.0 7.3e-06 25.2 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_3 PF01381.17 gi|336254471|ref|YP_004597578.1| - 2.7e-05 23.9 0.0 7.6e-05 22.4 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix HTH_AsnC-type PF13404.1 gi|336254471|ref|YP_004597578.1| - 0.00029 20.3 0.2 0.00078 18.9 0.2 1.7 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|336254471|ref|YP_004597578.1| - 0.00031 20.1 0.2 0.0013 18.1 0.1 2.0 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_31 PF13560.1 gi|336254471|ref|YP_004597578.1| - 0.00055 20.0 0.8 0.0098 16.0 0.0 3.1 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|336254471|ref|YP_004597578.1| - 0.0022 17.6 0.0 0.0043 16.6 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_23 PF13384.1 gi|336254471|ref|YP_004597578.1| - 0.0045 16.6 0.0 0.012 15.2 0.0 1.7 1 0 0 1 1 1 1 Homeodomain-like domain Phage_CI_repr PF07022.8 gi|336254471|ref|YP_004597578.1| - 0.0054 16.7 0.0 0.012 15.6 0.0 1.5 1 0 0 1 1 1 1 Bacteriophage CI repressor helix-turn-helix domain HTH_37 PF13744.1 gi|336254471|ref|YP_004597578.1| - 0.0065 16.2 0.0 0.013 15.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.1 gi|336254471|ref|YP_004597578.1| - 0.0097 15.4 0.1 0.024 14.1 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain MarR PF01047.17 gi|336254471|ref|YP_004597578.1| - 0.022 14.4 0.0 0.044 13.5 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_19 PF12844.2 gi|336254471|ref|YP_004597578.1| - 0.03 14.3 0.0 0.12 12.3 0.0 2.0 2 0 0 2 2 1 0 Helix-turn-helix domain Fe_dep_repress PF01325.14 gi|336254471|ref|YP_004597578.1| - 0.032 14.1 0.0 0.07 13.0 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Sigma70_ECF PF07638.6 gi|336254471|ref|YP_004597578.1| - 0.034 13.8 0.0 0.053 13.1 0.0 1.3 1 0 0 1 1 1 0 ECF sigma factor HTH_1 PF00126.22 gi|336254471|ref|YP_004597578.1| - 0.038 13.7 0.0 0.14 11.8 0.0 2.0 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family RPA_C PF08784.6 gi|336254471|ref|YP_004597578.1| - 0.051 14.0 0.0 0.096 13.1 0.0 1.4 1 0 0 1 1 1 0 Replication protein A C terminal HTH_5 PF01022.15 gi|336254471|ref|YP_004597578.1| - 0.086 12.5 0.0 0.2 11.3 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.1 gi|336254471|ref|YP_004597578.1| - 0.097 12.4 0.0 0.21 11.4 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain UPF0122 PF04297.9 gi|336254471|ref|YP_004597578.1| - 0.1 12.6 0.0 0.18 11.8 0.0 1.3 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_22 PF13309.1 gi|336254471|ref|YP_004597578.1| - 0.11 12.2 0.0 0.21 11.3 0.0 1.4 1 0 0 1 1 1 0 HTH domain RHH_1 PF01402.16 gi|336254471|ref|YP_004597578.1| - 0.12 12.2 0.4 3 7.8 0.1 2.9 3 0 0 3 3 2 0 Ribbon-helix-helix protein, copG family PAS_4 PF08448.5 gi|336254472|ref|YP_004597579.1| - 2.7e-20 72.4 10.2 3.1e-07 30.4 0.2 4.6 3 0 0 3 3 3 3 PAS fold HTH_10 PF04967.7 gi|336254472|ref|YP_004597579.1| - 2.6e-17 62.1 0.0 7.5e-17 60.6 0.0 1.9 1 0 0 1 1 1 1 HTH DNA binding domain PAS_9 PF13426.1 gi|336254472|ref|YP_004597579.1| - 4.3e-14 52.7 0.0 1.7e-05 25.0 0.0 3.9 3 0 0 3 3 3 3 PAS domain PAS PF00989.19 gi|336254472|ref|YP_004597579.1| - 1.3e-13 50.7 0.0 1.4e-10 40.9 0.0 2.8 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.1 gi|336254472|ref|YP_004597579.1| - 6.1e-13 48.1 0.2 0.0056 16.5 0.1 3.8 3 0 0 3 3 3 3 PAS domain PAS_3 PF08447.6 gi|336254472|ref|YP_004597579.1| - 2.4e-12 46.7 0.0 4.2e-11 42.7 0.0 2.4 2 0 0 2 2 2 1 PAS fold GAF_2 PF13185.1 gi|336254472|ref|YP_004597579.1| - 3.8e-10 40.4 14.5 1.9e-07 31.6 0.4 3.8 3 0 0 3 3 3 2 GAF domain GAF_3 PF13492.1 gi|336254472|ref|YP_004597579.1| - 1.1e-05 25.5 2.5 0.14 12.2 0.3 3.0 2 0 0 2 2 2 2 GAF domain Response_reg PF00072.19 gi|336254472|ref|YP_004597579.1| - 0.0024 17.8 0.6 0.0063 16.5 0.1 2.0 2 0 0 2 2 2 1 Response regulator receiver domain Sigma70_r4 PF04545.11 gi|336254472|ref|YP_004597579.1| - 0.019 14.2 0.1 0.091 12.0 0.0 2.3 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_5 PF01022.15 gi|336254472|ref|YP_004597579.1| - 0.045 13.4 0.0 0.12 12.0 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family PAS_11 PF14598.1 gi|336254472|ref|YP_004597579.1| - 0.047 13.6 0.0 0.094 12.6 0.0 1.4 1 0 0 1 1 1 0 PAS domain Usp PF00582.21 gi|336254473|ref|YP_004597580.1| - 3.8e-33 114.6 5.3 4.3e-33 114.4 3.7 1.0 1 0 0 1 1 1 1 Universal stress protein family DXP_reductoisom PF02670.11 gi|336254473|ref|YP_004597580.1| - 0.0077 16.7 0.2 0.012 16.1 0.1 1.5 1 1 0 1 1 1 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase ProQ PF04352.8 gi|336254473|ref|YP_004597580.1| - 0.047 13.3 0.4 0.062 12.9 0.3 1.4 1 0 0 1 1 1 0 ProQ/FINO family DsbD PF02683.10 gi|336254475|ref|YP_004597582.1| - 1.4e-08 34.5 15.5 1.9e-08 34.1 10.8 1.1 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DUF4225 PF13988.1 gi|336254475|ref|YP_004597582.1| - 0.47 9.9 5.2 0.29 10.6 2.2 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF4225) PMP22_Claudin PF00822.15 gi|336254475|ref|YP_004597582.1| - 1.8 8.1 5.8 4.3 6.9 1.3 2.4 2 0 0 2 2 2 0 PMP-22/EMP/MP20/Claudin family Redoxin PF08534.5 gi|336254476|ref|YP_004597583.1| - 7.7e-13 48.2 0.0 9.7e-13 47.8 0.0 1.1 1 0 0 1 1 1 1 Redoxin AhpC-TSA PF00578.16 gi|336254476|ref|YP_004597583.1| - 2.6e-12 46.4 0.0 3.5e-12 46.0 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Thioredoxin_8 PF13905.1 gi|336254476|ref|YP_004597583.1| - 4.1e-08 33.2 0.0 5.8e-08 32.7 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin PF00085.15 gi|336254476|ref|YP_004597583.1| - 1.2e-07 31.3 0.0 3e-06 26.8 0.0 2.1 2 0 0 2 2 2 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|336254476|ref|YP_004597583.1| - 0.0017 18.5 0.0 0.0022 18.1 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_7 PF13899.1 gi|336254476|ref|YP_004597583.1| - 0.079 12.9 0.0 0.12 12.4 0.0 1.4 1 0 0 1 1 1 0 Thioredoxin-like TAT_signal PF10518.4 gi|336254476|ref|YP_004597583.1| - 0.12 12.4 5.4 0.22 11.5 3.8 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence SCO1-SenC PF02630.9 gi|336254477|ref|YP_004597584.1| - 1.2e-12 47.7 0.0 2.3e-11 43.6 0.0 2.0 2 0 0 2 2 2 1 SCO1/SenC AhpC-TSA PF00578.16 gi|336254477|ref|YP_004597584.1| - 0.00051 19.7 0.0 0.00071 19.2 0.0 1.3 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|336254477|ref|YP_004597584.1| - 0.0017 17.9 0.0 0.0023 17.4 0.0 1.2 1 0 0 1 1 1 1 Redoxin UPF0547 PF10571.4 gi|336254478|ref|YP_004597585.1| - 0.0055 16.3 4.6 0.17 11.5 0.1 2.1 2 0 0 2 2 2 2 Uncharacterised protein family UPF0547 zf-HYPF PF07503.7 gi|336254478|ref|YP_004597585.1| - 0.014 14.8 2.6 0.04 13.3 0.2 2.1 2 0 0 2 2 2 0 HypF finger Zn_Tnp_IS1595 PF12760.2 gi|336254478|ref|YP_004597585.1| - 0.015 15.0 1.4 1.7 8.4 0.3 2.1 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|336254478|ref|YP_004597585.1| - 0.023 14.1 2.3 0.21 11.0 0.3 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-LITAF-like PF10601.4 gi|336254478|ref|YP_004597585.1| - 0.046 13.5 1.0 6 6.8 0.0 2.0 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain E7 PF00527.13 gi|336254478|ref|YP_004597585.1| - 0.056 13.6 0.2 10 6.3 0.1 2.0 2 0 0 2 2 2 0 E7 protein, Early protein Zn-ribbon_8 PF09723.5 gi|336254478|ref|YP_004597585.1| - 0.064 13.2 2.8 3.6 7.6 0.3 2.2 2 0 0 2 2 2 0 Zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|336254478|ref|YP_004597585.1| - 0.077 12.3 2.8 3.4 7.0 0.1 2.1 2 0 0 2 2 2 0 TFIIB zinc-binding CpXC PF14353.1 gi|336254478|ref|YP_004597585.1| - 0.14 12.1 1.8 7.8 6.4 0.5 2.0 2 0 0 2 2 2 0 CpXC protein Sgf11 PF08209.6 gi|336254478|ref|YP_004597585.1| - 0.17 11.2 4.4 2 7.7 0.1 2.3 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zinc-ribbons_6 PF07191.7 gi|336254478|ref|YP_004597585.1| - 0.23 11.2 3.4 0.9 9.3 2.4 1.8 1 1 1 2 2 2 0 zinc-ribbons Zn_Tnp_IS1 PF03811.8 gi|336254478|ref|YP_004597585.1| - 0.25 10.8 0.4 0.25 10.8 0.3 1.9 2 1 0 2 2 2 0 InsA N-terminal domain DZR PF12773.2 gi|336254478|ref|YP_004597585.1| - 0.27 11.0 5.5 1.9 8.3 3.8 1.9 1 1 0 1 1 1 0 Double zinc ribbon Nudix_N_2 PF14803.1 gi|336254478|ref|YP_004597585.1| - 0.3 10.7 6.1 1.8 8.3 0.6 2.2 2 0 0 2 2 2 0 Nudix N-terminal DiS_P_DiS PF06750.8 gi|336254478|ref|YP_004597585.1| - 0.39 10.5 1.7 4.5 7.1 1.2 2.0 1 1 0 1 1 1 0 Bacterial Peptidase A24 N-terminal domain zf-ribbon_3 PF13248.1 gi|336254478|ref|YP_004597585.1| - 0.4 9.9 7.0 1.1 8.5 4.9 1.7 1 1 0 1 1 1 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|336254478|ref|YP_004597585.1| - 0.54 9.9 4.1 2.6 7.7 2.8 1.9 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zinc_ribbon_5 PF13719.1 gi|336254478|ref|YP_004597585.1| - 0.66 9.6 3.6 12 5.5 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-IS66 PF13005.2 gi|336254478|ref|YP_004597585.1| - 0.68 9.9 4.9 3.1 7.8 1.3 2.1 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 zinc_ribbon_4 PF13717.1 gi|336254478|ref|YP_004597585.1| - 1.4 8.6 4.4 20 5.0 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Peptidase_M24 PF00557.19 gi|336254479|ref|YP_004597586.1| - 5e-55 186.2 2.1 9.7e-55 185.3 1.4 1.5 1 1 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|336254479|ref|YP_004597586.1| - 9.6e-22 77.8 0.0 1.9e-21 76.9 0.0 1.5 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain ClpS PF02617.12 gi|336254479|ref|YP_004597586.1| - 0.013 15.1 0.0 1.8 8.3 0.0 2.7 3 0 0 3 3 3 0 ATP-dependent Clp protease adaptor protein ClpS Glyco_transf_20 PF00982.16 gi|336254480|ref|YP_004597587.1| - 8.7e-118 393.7 0.0 9.9e-118 393.5 0.0 1.0 1 0 0 1 1 1 1 Glycosyltransferase family 20 Glycos_transf_1 PF00534.15 gi|336254480|ref|YP_004597587.1| - 0.00054 19.4 0.0 0.04 13.3 0.0 2.2 2 0 0 2 2 2 2 Glycosyl transferases group 1 COQ9 PF08511.6 gi|336254480|ref|YP_004597587.1| - 0.17 11.4 1.1 1.3 8.5 0.1 2.4 2 0 0 2 2 2 0 COQ9 Trehalose_PPase PF02358.11 gi|336254481|ref|YP_004597588.1| - 1.3e-38 132.2 0.0 1.6e-38 131.9 0.0 1.1 1 0 0 1 1 1 1 Trehalose-phosphatase HTH_24 PF13412.1 gi|336254482|ref|YP_004597589.1| - 2.8e-07 29.8 0.0 3.8e-07 29.3 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|336254482|ref|YP_004597589.1| - 0.00016 21.2 0.0 0.00029 20.4 0.0 1.5 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family DUF2250 PF10007.4 gi|336254482|ref|YP_004597589.1| - 0.00056 19.7 0.0 0.001 18.9 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) TrmB PF01978.14 gi|336254482|ref|YP_004597589.1| - 0.0029 17.2 0.0 0.0044 16.6 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.1 gi|336254482|ref|YP_004597589.1| - 0.0059 16.3 0.0 0.0077 16.0 0.0 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_AsnC-type PF13404.1 gi|336254482|ref|YP_004597589.1| - 0.02 14.3 0.0 0.03 13.8 0.0 1.3 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain MarR_2 PF12802.2 gi|336254482|ref|YP_004597589.1| - 0.021 14.4 0.0 0.033 13.8 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_20 PF12840.2 gi|336254482|ref|YP_004597589.1| - 0.044 13.5 0.0 0.061 13.1 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain B-block_TFIIIC PF04182.7 gi|336254482|ref|YP_004597589.1| - 0.11 12.3 0.0 0.21 11.4 0.0 1.6 1 1 0 1 1 1 0 B-block binding subunit of TFIIIC z-alpha PF02295.12 gi|336254482|ref|YP_004597589.1| - 0.11 12.2 0.0 0.18 11.5 0.0 1.3 1 0 0 1 1 1 0 Adenosine deaminase z-alpha domain Peptidase_M10 PF00413.19 gi|336254483|ref|YP_004597590.1| - 1.9e-05 24.4 0.0 2.7e-05 23.9 0.0 1.2 1 0 0 1 1 1 1 Matrixin Astacin PF01400.19 gi|336254483|ref|YP_004597590.1| - 0.0009 18.6 0.0 0.0013 18.1 0.0 1.2 1 0 0 1 1 1 1 Astacin (Peptidase family M12A) Reprolysin_4 PF13583.1 gi|336254483|ref|YP_004597590.1| - 0.0021 17.6 0.0 0.0024 17.4 0.0 1.2 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_5 PF13688.1 gi|336254483|ref|YP_004597590.1| - 0.004 17.1 0.0 0.0062 16.4 0.0 1.3 1 0 0 1 1 1 1 Metallo-peptidase family M12 Peptidase_M66 PF10462.4 gi|336254483|ref|YP_004597590.1| - 0.0071 15.2 0.0 0.01 14.7 0.0 1.1 1 0 0 1 1 1 1 Peptidase M66 Peptidase_M43 PF05572.8 gi|336254483|ref|YP_004597590.1| - 0.015 14.9 0.0 0.022 14.3 0.0 1.2 1 0 0 1 1 1 0 Pregnancy-associated plasma protein-A Reprolysin_2 PF13574.1 gi|336254483|ref|YP_004597590.1| - 0.015 15.3 0.0 0.021 14.9 0.0 1.3 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Reprolysin_3 PF13582.1 gi|336254483|ref|YP_004597590.1| - 0.016 15.7 0.0 0.027 15.0 0.0 1.5 1 1 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Metallopep PF12044.3 gi|336254483|ref|YP_004597590.1| - 0.021 13.3 0.0 0.025 13.0 0.0 1.1 1 0 0 1 1 1 0 Putative peptidase family Peptidase_M57 PF12388.3 gi|336254483|ref|YP_004597590.1| - 0.072 12.4 0.0 0.12 11.7 0.0 1.3 1 0 0 1 1 1 0 Dual-action HEIGH metallo-peptidase DUF3152 PF11350.3 gi|336254483|ref|YP_004597590.1| - 0.1 12.0 0.1 0.17 11.3 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3152) DUF2077 PF09850.4 gi|336254486|ref|YP_004597593.1| - 0.11 11.8 0.0 0.17 11.2 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2077) AF-4 PF05110.8 gi|336254486|ref|YP_004597593.1| - 0.29 8.9 1.4 0.33 8.7 1.0 1.0 1 0 0 1 1 1 0 AF-4 proto-oncoprotein Trypan_PARP PF05887.6 gi|336254487|ref|YP_004597594.1| - 0.087 12.6 7.0 0.13 12.1 0.5 2.2 2 0 0 2 2 2 0 Procyclic acidic repetitive protein (PARP) TAT_signal PF10518.4 gi|336254487|ref|YP_004597594.1| - 0.64 10.1 3.9 1.1 9.4 2.7 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence PALP PF00291.20 gi|336254488|ref|YP_004597595.1| - 2.6e-58 197.6 0.1 3.2e-58 197.3 0.1 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Thioredoxin PF00085.15 gi|336254489|ref|YP_004597596.1| - 1.8e-07 30.8 0.0 2.1e-07 30.5 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|336254489|ref|YP_004597596.1| - 0.00052 20.1 0.0 0.0098 16.0 0.0 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_7 PF13899.1 gi|336254489|ref|YP_004597596.1| - 0.00094 19.1 0.0 0.0014 18.5 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_9 PF14595.1 gi|336254489|ref|YP_004597596.1| - 0.0011 18.5 0.0 0.002 17.6 0.0 1.4 1 1 0 1 1 1 1 Thioredoxin Thioredoxin_3 PF13192.1 gi|336254489|ref|YP_004597596.1| - 0.0062 16.3 0.0 0.0095 15.7 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin_8 PF13905.1 gi|336254489|ref|YP_004597596.1| - 0.026 14.6 0.0 3.7 7.7 0.0 2.2 1 1 1 2 2 2 0 Thioredoxin-like Metallophos_2 PF12850.2 gi|336254490|ref|YP_004597597.1| - 6.5e-13 48.8 0.0 9.8e-12 44.9 0.0 2.0 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|336254490|ref|YP_004597597.1| - 7.3e-05 22.2 0.7 0.0039 16.5 0.5 2.6 2 1 0 2 2 2 1 Calcineurin-like phosphoesterase PBC PF03792.8 gi|336254490|ref|YP_004597597.1| - 0.2 11.3 0.0 0.36 10.4 0.0 1.3 1 0 0 1 1 1 0 PBC domain Thioredox_DsbH PF03190.10 gi|336254491|ref|YP_004597598.1| - 2.5e-73 245.1 0.0 4.4e-73 244.3 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.1 gi|336254491|ref|YP_004597598.1| - 1.3e-12 47.5 0.0 3.3e-12 46.2 0.0 1.7 1 0 0 1 1 1 1 Thioredoxin-like GlcNAc_2-epim PF07221.6 gi|336254491|ref|YP_004597598.1| - 2.3e-08 33.4 0.2 0.001 18.1 0.0 2.9 2 1 1 3 3 3 2 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) Glyco_hydro_88 PF07470.8 gi|336254491|ref|YP_004597598.1| - 0.0001 21.4 0.3 0.0022 17.1 0.0 2.6 3 1 0 3 3 3 1 Glycosyl Hydrolase Family 88 Glyco_hydro_76 PF03663.9 gi|336254491|ref|YP_004597598.1| - 0.006 16.0 0.0 0.41 9.9 0.0 2.6 2 1 0 2 2 2 1 Glycosyl hydrolase family 76 Thioredoxin_2 PF13098.1 gi|336254491|ref|YP_004597598.1| - 0.0067 16.6 0.0 0.028 14.6 0.0 2.0 2 0 0 2 2 2 1 Thioredoxin-like domain C5-epim_C PF06662.8 gi|336254491|ref|YP_004597598.1| - 0.033 13.4 0.1 2 7.6 0.0 2.8 3 0 0 3 3 3 0 D-glucuronyl C5-epimerase C-terminus Fructosamin_kin PF03881.9 gi|336254492|ref|YP_004597599.1| - 2.9e-53 180.7 0.0 3.9e-53 180.3 0.0 1.0 1 0 0 1 1 1 1 Fructosamine kinase APH PF01636.18 gi|336254492|ref|YP_004597599.1| - 3.5e-18 66.2 5.7 4.8e-18 65.7 3.9 1.2 1 0 0 1 1 1 1 Phosphotransferase enzyme family EcKinase PF02958.15 gi|336254492|ref|YP_004597599.1| - 0.082 12.0 0.0 0.15 11.1 0.0 1.4 1 0 0 1 1 1 0 Ecdysteroid kinase APH_6_hur PF04655.9 gi|336254492|ref|YP_004597599.1| - 0.098 11.7 0.3 0.18 10.9 0.2 1.7 1 1 0 1 1 1 0 Aminoglycoside/hydroxyurea antibiotic resistance kinase RIO1 PF01163.17 gi|336254492|ref|YP_004597599.1| - 0.11 11.8 0.0 3.6 6.9 0.0 2.1 2 0 0 2 2 2 0 RIO1 family DHFR_1 PF00186.14 gi|336254493|ref|YP_004597600.1| - 2.5e-49 166.9 0.0 2.9e-49 166.7 0.0 1.0 1 0 0 1 1 1 1 Dihydrofolate reductase Thymidylat_synt PF00303.14 gi|336254494|ref|YP_004597601.1| - 7.8e-95 316.9 0.0 8.9e-95 316.7 0.0 1.0 1 0 0 1 1 1 1 Thymidylate synthase Peptidase_C28 PF05408.6 gi|336254494|ref|YP_004597601.1| - 0.015 14.8 0.0 0.022 14.2 0.0 1.3 1 0 0 1 1 1 0 Foot-and-mouth virus L-proteinase RNase_H_2 PF13482.1 gi|336254495|ref|YP_004597602.1| - 9.2e-37 126.3 0.0 1.2e-36 125.9 0.0 1.2 1 0 0 1 1 1 1 RNase_H superfamily HHH_5 PF14520.1 gi|336254495|ref|YP_004597602.1| - 2.3e-09 37.2 0.0 6.3e-09 35.8 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH PF00633.18 gi|336254495|ref|YP_004597602.1| - 0.00019 20.9 0.1 0.0093 15.6 0.0 2.8 2 0 0 2 2 2 1 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.4 gi|336254495|ref|YP_004597602.1| - 0.011 15.2 0.0 0.025 14.1 0.0 1.6 1 0 0 1 1 1 0 Fingers domain of DNA polymerase lambda SnoaL_2 PF12680.2 gi|336254495|ref|YP_004597602.1| - 0.013 15.8 7.8 0.17 12.3 2.3 3.4 2 1 0 2 2 2 0 SnoaL-like domain HHH_2 PF12826.2 gi|336254495|ref|YP_004597602.1| - 0.045 13.6 0.0 0.096 12.5 0.0 1.5 1 0 0 1 1 1 0 Helix-hairpin-helix motif DEAD PF00270.24 gi|336254496|ref|YP_004597603.1| - 4.7e-20 71.7 0.0 9.4e-19 67.5 0.0 2.2 2 0 0 2 2 2 1 DEAD/DEAH box helicase DUF1998 PF09369.5 gi|336254496|ref|YP_004597603.1| - 2.1e-13 50.6 0.5 1.4e-11 44.7 0.2 2.9 1 1 1 2 2 2 1 Domain of unknown function (DUF1998) Helicase_C PF00271.26 gi|336254496|ref|YP_004597603.1| - 1.5e-09 37.5 0.0 5.1e-09 35.8 0.0 1.9 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|336254496|ref|YP_004597603.1| - 1.7e-05 24.6 0.0 2.7e-05 24.0 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit SNF2_N PF00176.18 gi|336254496|ref|YP_004597603.1| - 0.052 12.3 0.0 0.08 11.7 0.0 1.3 1 0 0 1 1 1 0 SNF2 family N-terminal domain Methyltransf_24 PF13578.1 gi|336254496|ref|YP_004597603.1| - 0.067 14.0 3.1 0.14 12.9 0.1 3.1 4 0 0 4 4 4 0 Methyltransferase domain DUF2628 PF10947.3 gi|336254497|ref|YP_004597604.1| - 6.7 6.5 7.1 0.9 9.3 1.3 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2628) EutH PF04346.7 gi|336254498|ref|YP_004597605.1| - 0.0074 15.2 0.6 0.011 14.7 0.4 1.2 1 0 0 1 1 1 1 Ethanolamine utilisation protein, EutH Peptidase_U4 PF03419.8 gi|336254498|ref|YP_004597605.1| - 0.19 10.7 1.4 0.25 10.3 1.0 1.1 1 0 0 1 1 1 0 Sporulation factor SpoIIGA DUF2238 PF09997.4 gi|336254499|ref|YP_004597606.1| - 0.22 10.9 5.0 1.6 8.1 3.5 2.1 1 1 0 1 1 1 0 Predicted membrane protein (DUF2238) DUF4233 PF14017.1 gi|336254499|ref|YP_004597606.1| - 1.8 8.4 16.7 2.1 8.3 2.4 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4233) NADHdeh_related PF10125.4 gi|336254499|ref|YP_004597606.1| - 1.8 7.6 9.3 0.36 9.9 0.6 2.5 2 1 1 3 3 3 0 NADH dehydrogenase I, subunit N related protein MitoNEET_N PF10660.4 gi|336254499|ref|YP_004597606.1| - 7.2 6.5 6.3 1.3 8.9 0.1 2.8 2 1 1 3 3 3 0 Iron-containing outer mitochondrial membrane protein N-terminus TAT_signal PF10518.4 gi|336254500|ref|YP_004597607.1| - 0.0045 16.8 5.3 0.0097 15.8 3.7 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.4 gi|336254500|ref|YP_004597607.1| - 0.0046 16.0 0.6 0.0092 15.1 0.4 1.5 1 0 0 1 1 1 1 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal DUF3613 PF12266.3 gi|336254500|ref|YP_004597607.1| - 0.11 12.0 0.6 0.2 11.2 0.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3613) GARS_A PF01071.14 gi|336254501|ref|YP_004597608.1| - 1.1e-53 181.7 0.0 1.9e-53 180.9 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.10 gi|336254501|ref|YP_004597608.1| - 1.8e-26 92.5 0.1 3.7e-26 91.5 0.1 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.11 gi|336254501|ref|YP_004597608.1| - 1.5e-19 69.9 0.5 3.3e-19 68.8 0.1 1.8 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp_4 PF13535.1 gi|336254501|ref|YP_004597608.1| - 3e-19 69.4 0.1 6e-19 68.4 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|336254501|ref|YP_004597608.1| - 1.8e-06 26.9 0.0 9.6e-06 24.5 0.0 2.0 2 1 0 2 2 2 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.9 gi|336254501|ref|YP_004597608.1| - 3.9e-06 26.8 0.0 7.1e-06 25.9 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|336254501|ref|YP_004597608.1| - 0.01 15.1 0.0 0.019 14.2 0.0 1.4 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain UPF0560 PF10577.4 gi|336254502|ref|YP_004597609.1| - 0.085 11.1 0.8 0.093 10.9 0.6 1.0 1 0 0 1 1 1 0 Uncharacterised protein family UPF0560 Aminotran_3 PF00202.16 gi|336254503|ref|YP_004597610.1| - 2.3e-62 210.8 0.0 3e-61 207.1 0.0 2.0 1 1 0 1 1 1 1 Aminotransferase class-III DUF4010 PF13194.1 gi|336254504|ref|YP_004597611.1| - 4.3e-50 169.9 31.3 4.3e-50 169.9 21.7 2.3 2 1 0 2 2 2 1 Domain of unknown function (DUF4010) MgtC PF02308.11 gi|336254504|ref|YP_004597611.1| - 1.8e-13 50.5 9.3 1.8e-13 50.5 6.5 3.6 3 1 0 3 3 3 1 MgtC family zf-ribbon_3 PF13248.1 gi|336254505|ref|YP_004597612.1| - 0.00058 18.9 0.5 0.00077 18.5 0.3 1.2 1 0 0 1 1 1 1 zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|336254505|ref|YP_004597612.1| - 0.0021 17.5 0.4 1.1 8.8 0.2 2.3 2 0 0 2 2 2 2 NADH pyrophosphatase zinc ribbon domain DZR PF12773.2 gi|336254505|ref|YP_004597612.1| - 0.0075 16.0 0.3 0.014 15.1 0.2 1.5 1 1 0 1 1 1 1 Double zinc ribbon UPF0547 PF10571.4 gi|336254505|ref|YP_004597612.1| - 0.068 12.8 0.1 0.15 11.7 0.0 1.6 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 CoatB PF10389.4 gi|336254505|ref|YP_004597612.1| - 0.09 12.6 0.4 0.14 12.0 0.3 1.2 1 0 0 1 1 1 0 Bacteriophage coat protein B VirB3 PF05101.8 gi|336254505|ref|YP_004597612.1| - 0.11 12.4 0.1 0.13 12.2 0.1 1.1 1 0 0 1 1 1 0 Type IV secretory pathway, VirB3-like protein zf-UDP PF14569.1 gi|336254505|ref|YP_004597612.1| - 0.11 12.2 0.2 0.15 11.8 0.1 1.1 1 0 0 1 1 1 0 Zinc-binding RING-finger A2L_zn_ribbon PF08792.5 gi|336254505|ref|YP_004597612.1| - 0.25 10.8 1.6 0.65 9.5 0.2 1.9 1 1 1 2 2 2 0 A2L zinc ribbon domain PadR PF03551.9 gi|336254506|ref|YP_004597613.1| - 9e-18 63.8 1.8 1.1e-17 63.5 1.2 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|336254506|ref|YP_004597613.1| - 0.00013 22.2 0.0 0.00017 21.8 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|336254506|ref|YP_004597613.1| - 0.003 17.3 0.0 0.0043 16.8 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DUF1495 PF07381.6 gi|336254506|ref|YP_004597613.1| - 0.019 14.6 0.0 0.03 13.9 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) HTH_34 PF13601.1 gi|336254506|ref|YP_004597613.1| - 0.044 13.8 0.0 0.056 13.4 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|336254506|ref|YP_004597613.1| - 0.05 13.2 1.5 3.6 7.3 0.2 2.7 3 0 0 3 3 3 0 MarR family HemN_C PF06969.11 gi|336254506|ref|YP_004597613.1| - 0.098 12.7 0.1 0.16 12.0 0.0 1.5 1 1 0 1 1 1 0 HemN C-terminal domain TrmB PF01978.14 gi|336254506|ref|YP_004597613.1| - 0.11 12.2 0.1 0.16 11.6 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB CarboxypepD_reg PF13620.1 gi|336254508|ref|YP_004597615.1| - 1.4e-09 37.8 1.3 0.00018 21.4 0.0 2.5 2 0 0 2 2 2 2 Carboxypeptidase regulatory-like domain Big_1 PF02369.11 gi|336254508|ref|YP_004597615.1| - 0.00011 22.0 10.6 0.002 17.9 3.1 2.8 2 0 0 2 2 2 2 Bacterial Ig-like domain (group 1) Cna_B PF05738.8 gi|336254508|ref|YP_004597615.1| - 0.00054 19.6 0.4 0.00054 19.6 0.3 3.2 3 1 0 3 3 3 1 Cna protein B-type domain DUF4480 PF13715.1 gi|336254508|ref|YP_004597615.1| - 0.0012 18.8 0.1 2.1 8.4 0.0 2.5 2 0 0 2 2 2 2 Domain of unknown function (DUF4480) DUF824 PF05688.6 gi|336254508|ref|YP_004597615.1| - 0.0016 18.0 0.1 0.0033 17.0 0.1 1.5 1 0 0 1 1 1 1 Salmonella repeat of unknown function (DUF824) DUF2606 PF10794.4 gi|336254508|ref|YP_004597615.1| - 0.0021 17.4 1.0 0.28 10.5 0.1 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF2606) MG1 PF11974.3 gi|336254508|ref|YP_004597615.1| - 0.0039 17.7 1.7 0.19 12.2 1.2 2.6 1 1 0 1 1 1 1 Alpha-2-macroglobulin MG1 domain Dioxygenase_C PF00775.16 gi|336254508|ref|YP_004597615.1| - 0.012 14.9 1.0 0.023 13.9 0.3 1.7 2 0 0 2 2 2 0 Dioxygenase Y_Y_Y PF07495.8 gi|336254508|ref|YP_004597615.1| - 0.013 15.2 0.0 0.12 12.1 0.0 2.4 2 0 0 2 2 2 0 Y_Y_Y domain fn3_3 PF14686.1 gi|336254508|ref|YP_004597615.1| - 0.077 13.1 0.3 0.26 11.4 0.0 1.9 2 0 0 2 2 2 0 Polysaccharide lyase family 4, domain II TAT_signal PF10518.4 gi|336254508|ref|YP_004597615.1| - 0.41 10.7 1.9 0.77 9.9 1.3 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF4198 PF10670.4 gi|336254508|ref|YP_004597615.1| - 0.52 10.2 10.0 0.58 10.1 0.2 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF4198) HypA PF01155.14 gi|336254509|ref|YP_004597616.1| - 0.0098 15.5 0.4 0.023 14.3 0.3 1.7 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family DZR PF12773.2 gi|336254509|ref|YP_004597616.1| - 0.023 14.4 0.3 0.041 13.7 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon TF_Zn_Ribbon PF08271.7 gi|336254509|ref|YP_004597616.1| - 0.055 12.7 1.9 0.15 11.3 1.3 1.8 1 1 0 1 1 1 0 TFIIB zinc-binding DUF2072 PF09845.4 gi|336254509|ref|YP_004597616.1| - 0.059 13.3 1.2 0.24 11.3 0.1 2.1 2 0 0 2 2 2 0 Zn-ribbon containing protein (DUF2072) DUF1451 PF07295.6 gi|336254509|ref|YP_004597616.1| - 0.2 11.4 1.6 0.42 10.3 0.2 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1451) UPF0547 PF10571.4 gi|336254509|ref|YP_004597616.1| - 0.68 9.6 2.9 4 7.2 0.1 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Ribosomal_S14 PF00253.16 gi|336254509|ref|YP_004597616.1| - 5.6 6.4 5.9 1.4 8.3 0.8 2.4 3 1 0 3 3 3 0 Ribosomal protein S14p/S29e THF_DHG_CYH_C PF02882.14 gi|336254510|ref|YP_004597617.1| - 6.7e-68 226.8 1.1 8.8e-68 226.4 0.8 1.2 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain THF_DHG_CYH PF00763.18 gi|336254510|ref|YP_004597617.1| - 6.9e-37 126.0 0.0 1.1e-36 125.4 0.0 1.3 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Methyltransf_18 PF12847.2 gi|336254512|ref|YP_004597619.1| - 0.0022 18.5 0.0 0.0032 18.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|336254512|ref|YP_004597619.1| - 0.019 15.4 0.0 0.032 14.7 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_23 PF13489.1 gi|336254512|ref|YP_004597619.1| - 0.035 13.8 0.0 0.061 13.0 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase domain TehB PF03848.9 gi|336254512|ref|YP_004597619.1| - 0.16 11.1 0.0 0.23 10.5 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB RMF PF04957.7 gi|336254512|ref|YP_004597619.1| - 0.24 11.1 1.6 0.57 9.9 0.1 2.2 2 0 0 2 2 2 0 Ribosome modulation factor SHMT PF00464.14 gi|336254513|ref|YP_004597620.1| - 7.1e-156 518.5 0.0 8.5e-156 518.3 0.0 1.0 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Beta_elim_lyase PF01212.16 gi|336254513|ref|YP_004597620.1| - 4e-09 36.0 0.0 8.2e-08 31.7 0.0 2.1 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.16 gi|336254513|ref|YP_004597620.1| - 2.8e-08 33.0 0.0 8.2e-08 31.5 0.0 1.7 1 1 1 2 2 2 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|336254513|ref|YP_004597620.1| - 0.0084 15.1 0.6 0.017 14.1 0.4 1.5 1 1 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Trypsin_2 PF13365.1 gi|336254513|ref|YP_004597620.1| - 0.081 12.9 0.0 0.13 12.2 0.0 1.5 1 0 0 1 1 1 0 Trypsin-like peptidase domain Corona_nucleoca PF00937.13 gi|336254514|ref|YP_004597621.1| - 0.36 9.7 2.1 0.54 9.1 1.4 1.1 1 0 0 1 1 1 0 Coronavirus nucleocapsid protein DUF876 PF05936.7 gi|336254515|ref|YP_004597622.1| - 0.11 10.9 0.0 0.15 10.5 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF876) RNase_P_p30 PF01876.11 gi|336254516|ref|YP_004597623.1| - 4.3e-29 100.7 0.0 5.1e-29 100.4 0.0 1.1 1 0 0 1 1 1 1 RNase P subunit p30 PHP PF02811.14 gi|336254516|ref|YP_004597623.1| - 0.033 13.9 0.0 0.039 13.7 0.0 1.1 1 0 0 1 1 1 0 PHP domain Methyltransf_31 PF13847.1 gi|336254517|ref|YP_004597624.1| - 9.4e-16 57.7 0.0 1.4e-15 57.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|336254517|ref|YP_004597624.1| - 4.9e-13 49.3 0.1 1.5e-12 47.8 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|336254517|ref|YP_004597624.1| - 7.7e-13 49.0 0.2 1.7e-12 47.8 0.1 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|336254517|ref|YP_004597624.1| - 1.3e-10 41.6 0.0 2.2e-10 40.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|336254517|ref|YP_004597624.1| - 1.7e-10 40.4 0.0 3e-10 39.6 0.0 1.4 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.1 gi|336254517|ref|YP_004597624.1| - 4.5e-09 36.5 0.0 8.4e-09 35.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|336254517|ref|YP_004597624.1| - 1.9e-08 34.2 0.1 5.4e-08 32.7 0.0 1.7 1 1 1 2 2 2 1 Methyltransferase domain MTS PF05175.9 gi|336254517|ref|YP_004597624.1| - 1e-07 31.4 0.0 1.4e-07 31.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|336254517|ref|YP_004597624.1| - 2.2e-07 30.9 0.4 4.3e-07 29.9 0.3 1.6 1 1 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|336254517|ref|YP_004597624.1| - 0.0019 17.2 0.0 0.0023 17.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_32 PF13679.1 gi|336254517|ref|YP_004597624.1| - 0.0043 16.7 0.0 0.0059 16.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|336254517|ref|YP_004597624.1| - 0.0043 16.2 0.0 0.0062 15.7 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) DREV PF05219.7 gi|336254517|ref|YP_004597624.1| - 0.0081 15.0 0.0 0.012 14.5 0.0 1.2 1 0 0 1 1 1 1 DREV methyltransferase tRNA_U5-meth_tr PF05958.6 gi|336254517|ref|YP_004597624.1| - 0.0097 14.6 0.0 0.024 13.3 0.0 1.5 1 1 1 2 2 2 1 tRNA (Uracil-5-)-methyltransferase CMAS PF02353.15 gi|336254517|ref|YP_004597624.1| - 0.023 13.7 0.0 0.03 13.3 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase PCMT PF01135.14 gi|336254517|ref|YP_004597624.1| - 0.053 13.0 0.0 0.074 12.5 0.0 1.1 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_4 PF02390.12 gi|336254517|ref|YP_004597624.1| - 0.098 11.6 0.0 0.14 11.1 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase Repressor_Mnt PF11423.3 gi|336254517|ref|YP_004597624.1| - 6.3 6.2 6.0 1.5 8.2 0.3 2.7 3 1 0 3 3 3 0 Regulatory protein Mnt RNase_P_Rpp14 PF01900.14 gi|336254518|ref|YP_004597625.1| - 1.9e-19 69.5 0.0 2.4e-19 69.2 0.0 1.1 1 0 0 1 1 1 1 Rpp14/Pop5 family Proteasome PF00227.21 gi|336254519|ref|YP_004597626.1| - 2.4e-55 186.8 0.0 2.9e-55 186.4 0.0 1.1 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.4 gi|336254519|ref|YP_004597626.1| - 2.7e-14 52.1 0.1 4.5e-14 51.4 0.1 1.4 1 0 0 1 1 1 1 Proteasome subunit A N-terminal signature SBDS PF01172.13 gi|336254520|ref|YP_004597627.1| - 9.1e-25 86.2 0.0 1.8e-24 85.3 0.0 1.5 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.5 gi|336254520|ref|YP_004597627.1| - 3.8e-21 75.0 0.0 6.5e-21 74.3 0.0 1.4 1 0 0 1 1 1 1 SBDS protein C-terminal domain YbjN PF10722.4 gi|336254520|ref|YP_004597627.1| - 0.014 15.3 0.7 1.6 8.7 0.0 2.3 2 0 0 2 2 2 0 Putative bacterial sensory transduction regulator FUN14 PF04930.10 gi|336254521|ref|YP_004597628.1| - 1.1e-13 51.3 3.9 1.4e-13 50.9 2.7 1.1 1 0 0 1 1 1 1 FUN14 family DUF3188 PF11384.3 gi|336254521|ref|YP_004597628.1| - 8.2 6.0 8.2 0.38 10.3 0.5 2.4 3 0 0 3 3 3 0 Protein of unknown function (DUF3188) MMR_HSR1 PF01926.18 gi|336254522|ref|YP_004597629.1| - 2.1e-18 66.3 0.0 5.1e-18 65.1 0.0 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU PF00009.22 gi|336254522|ref|YP_004597629.1| - 6.4e-11 42.0 0.0 1.7e-10 40.6 0.0 1.7 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP-bdg_N PF13167.1 gi|336254522|ref|YP_004597629.1| - 1.7e-09 37.6 0.0 4.9e-09 36.1 0.0 1.8 1 0 0 1 1 1 1 GTP-binding GTPase N-terminal cobW PF02492.14 gi|336254522|ref|YP_004597629.1| - 2.8e-05 23.6 0.6 0.0039 16.6 0.1 2.4 1 1 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain FeoB_N PF02421.13 gi|336254522|ref|YP_004597629.1| - 0.00013 21.2 0.1 0.084 12.1 0.0 2.6 3 0 0 3 3 3 2 Ferrous iron transport protein B Miro PF08477.8 gi|336254522|ref|YP_004597629.1| - 0.001 19.5 0.0 0.0037 17.7 0.0 2.0 1 1 0 1 1 1 1 Miro-like protein Arf PF00025.16 gi|336254522|ref|YP_004597629.1| - 0.0027 16.9 0.2 0.92 8.7 0.1 2.5 2 0 0 2 2 2 2 ADP-ribosylation factor family AAA_18 PF13238.1 gi|336254522|ref|YP_004597629.1| - 0.0052 17.0 0.5 0.058 13.6 0.0 2.9 3 1 0 3 3 3 1 AAA domain PduV-EutP PF10662.4 gi|336254522|ref|YP_004597629.1| - 0.0098 15.3 0.0 0.5 9.8 0.0 2.4 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation AAA_16 PF13191.1 gi|336254522|ref|YP_004597629.1| - 0.012 15.5 0.1 0.043 13.7 0.1 2.1 1 1 0 1 1 1 0 AAA ATPase domain AAA_17 PF13207.1 gi|336254522|ref|YP_004597629.1| - 0.012 16.3 0.2 0.012 16.3 0.1 2.8 2 2 1 3 3 3 0 AAA domain AAA_23 PF13476.1 gi|336254522|ref|YP_004597629.1| - 0.018 15.3 1.2 6.4 7.0 0.8 2.3 2 0 0 2 2 2 0 AAA domain Syntaxin PF00804.20 gi|336254522|ref|YP_004597629.1| - 0.029 14.5 0.6 0.088 12.9 0.2 2.0 2 0 0 2 2 2 0 Syntaxin AAA_22 PF13401.1 gi|336254522|ref|YP_004597629.1| - 0.035 14.2 0.1 0.15 12.2 0.1 2.1 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|336254522|ref|YP_004597629.1| - 0.041 14.1 0.0 0.11 12.7 0.0 1.9 2 0 0 2 2 2 0 ABC transporter MobB PF03205.9 gi|336254522|ref|YP_004597629.1| - 0.043 13.5 0.0 0.094 12.4 0.0 1.7 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.1 gi|336254522|ref|YP_004597629.1| - 0.079 12.8 1.1 0.47 10.3 0.0 2.8 2 2 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|336254522|ref|YP_004597629.1| - 0.08 12.8 0.0 0.24 11.3 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|336254522|ref|YP_004597629.1| - 0.088 12.2 1.3 0.6 9.4 0.3 2.9 2 1 1 3 3 3 0 AAA domain Thiolase_C PF02803.13 gi|336254523|ref|YP_004597630.1| - 1.3e-07 31.0 0.1 4.2e-07 29.4 0.0 1.8 2 0 0 2 2 2 1 Thiolase, C-terminal domain Thiolase_N PF00108.18 gi|336254523|ref|YP_004597630.1| - 0.00015 20.8 0.1 0.00027 20.0 0.1 1.5 2 0 0 2 2 2 1 Thiolase, N-terminal domain Ketoacyl-synt_C PF02801.17 gi|336254523|ref|YP_004597630.1| - 0.0085 15.9 0.1 19 5.1 0.0 3.3 3 0 0 3 3 3 2 Beta-ketoacyl synthase, C-terminal domain DUF35 PF01796.12 gi|336254524|ref|YP_004597631.1| - 9.8e-07 28.9 0.9 1.6e-06 28.2 0.6 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain zf-C3HC4_3 PF13920.1 gi|336254525|ref|YP_004597632.1| - 5.8 6.6 5.8 5.5 6.7 0.1 2.5 3 0 0 3 3 3 0 Zinc finger, C3HC4 type (RING finger) DUF4510 PF14971.1 gi|336254526|ref|YP_004597633.1| - 0.15 12.1 9.1 0.076 13.1 2.7 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF4510) BTV_NS2 PF04514.7 gi|336254526|ref|YP_004597633.1| - 3.2 6.5 12.2 5.1 5.8 8.5 1.3 1 0 0 1 1 1 0 Bluetongue virus non-structural protein NS2 BUD22 PF09073.5 gi|336254526|ref|YP_004597633.1| - 5.5 5.9 16.8 7.8 5.4 11.6 1.2 1 0 0 1 1 1 0 BUD22 RNase_H_2 PF13482.1 gi|336254528|ref|YP_004597635.1| - 3.7e-33 114.6 0.0 4.7e-33 114.3 0.0 1.1 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_A_exo1 PF01612.15 gi|336254528|ref|YP_004597635.1| - 0.0059 16.0 0.0 0.0091 15.4 0.0 1.3 1 0 0 1 1 1 1 3'-5' exonuclease HHH_5 PF14520.1 gi|336254528|ref|YP_004597635.1| - 0.035 14.2 0.0 0.092 12.9 0.0 1.7 1 0 0 1 1 1 0 Helix-hairpin-helix domain 4HBT_2 PF13279.1 gi|336254529|ref|YP_004597636.1| - 1.1e-15 58.1 0.0 1.3e-15 57.8 0.0 1.0 1 0 0 1 1 1 1 Thioesterase-like superfamily 4HBT PF03061.17 gi|336254529|ref|YP_004597636.1| - 7.2e-14 51.6 0.1 9.5e-14 51.2 0.0 1.2 1 0 0 1 1 1 1 Thioesterase superfamily Acyl-ACP_TE PF01643.12 gi|336254529|ref|YP_004597636.1| - 3.1e-09 36.1 0.0 5.9e-09 35.2 0.0 1.4 1 1 0 1 1 1 1 Acyl-ACP thioesterase Acetyltransf_1 PF00583.19 gi|336254533|ref|YP_004597640.1| - 1.5e-21 76.1 0.1 2.3e-21 75.6 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|336254533|ref|YP_004597640.1| - 2.7e-15 56.5 0.8 3.5e-15 56.1 0.6 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|336254533|ref|YP_004597640.1| - 6.5e-10 39.0 0.0 9.2e-10 38.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|336254533|ref|YP_004597640.1| - 9e-10 38.1 0.0 1.5e-09 37.4 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.1 gi|336254533|ref|YP_004597640.1| - 1.1e-09 38.5 0.0 1.4e-09 38.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|336254533|ref|YP_004597640.1| - 4.1e-09 36.3 0.1 8.2e-09 35.3 0.1 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|336254533|ref|YP_004597640.1| - 2.7e-08 33.8 0.0 3.5e-08 33.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|336254533|ref|YP_004597640.1| - 1.4e-07 31.5 0.2 1.7e-07 31.2 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|336254533|ref|YP_004597640.1| - 7e-06 25.8 0.0 1.5e-05 24.7 0.0 1.5 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase DUF3749 PF12568.3 gi|336254533|ref|YP_004597640.1| - 0.0015 18.1 0.0 0.0024 17.4 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_13 PF13880.1 gi|336254533|ref|YP_004597640.1| - 0.029 14.1 0.0 0.056 13.1 0.0 1.4 1 0 0 1 1 1 0 ESCO1/2 acetyl-transferase Acetyltransf_6 PF13480.1 gi|336254533|ref|YP_004597640.1| - 0.031 14.2 6.6 0.028 14.3 3.1 1.9 1 1 1 2 2 2 0 Acetyltransferase (GNAT) domain CBS PF00571.23 gi|336254534|ref|YP_004597641.1| - 1.7e-22 78.9 6.6 2.2e-12 46.5 0.5 2.2 2 0 0 2 2 2 2 CBS domain OrfB_Zn_ribbon PF07282.6 gi|336254534|ref|YP_004597641.1| - 0.01 15.4 1.2 0.021 14.4 0.2 1.9 2 0 0 2 2 2 0 Putative transposase DNA-binding domain PhnA_Zn_Ribbon PF08274.7 gi|336254534|ref|YP_004597641.1| - 0.097 12.4 2.0 0.22 11.3 1.4 1.6 1 1 0 1 1 1 0 PhnA Zinc-Ribbon Desulfoferrod_N PF06397.7 gi|336254534|ref|YP_004597641.1| - 0.15 11.4 1.6 0.27 10.6 1.1 1.3 1 0 0 1 1 1 0 Desulfoferrodoxin, N-terminal domain Zn-ribbon_8 PF09723.5 gi|336254534|ref|YP_004597641.1| - 0.19 11.7 0.9 0.35 10.8 0.6 1.5 1 0 0 1 1 1 0 Zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|336254534|ref|YP_004597641.1| - 1.2 8.5 6.8 1.5 8.1 2.0 2.8 2 1 1 3 3 3 0 TFIIB zinc-binding GGDN PF05165.7 gi|336254535|ref|YP_004597642.1| - 2.5e-94 314.9 0.2 3.1e-94 314.6 0.1 1.0 1 0 0 1 1 1 1 GGDN family RNA_pol_Rpb2_5 PF04567.12 gi|336254536|ref|YP_004597643.1| - 0.045 13.7 0.5 0.045 13.7 0.3 2.0 2 0 0 2 2 2 0 RNA polymerase Rpb2, domain 5 KIF1B PF12423.3 gi|336254536|ref|YP_004597643.1| - 0.049 13.6 0.2 0.83 9.7 0.0 2.4 2 1 0 2 2 2 0 Kinesin protein 1B DNA_pol_alpha_N PF12254.3 gi|336254536|ref|YP_004597643.1| - 1.1 9.1 0.0 1.1 9.1 0.0 2.6 2 1 1 3 3 3 0 DNA polymerase alpha subunit p180 N terminal G_glu_transpept PF01019.16 gi|336254537|ref|YP_004597644.1| - 1.5e-141 472.4 0.0 1.7e-141 472.1 0.0 1.1 1 0 0 1 1 1 1 Gamma-glutamyltranspeptidase UCR_Fe-S_N PF10399.4 gi|336254537|ref|YP_004597644.1| - 0.065 12.4 1.9 0.18 11.0 1.3 1.7 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal CoA_transf_3 PF02515.12 gi|336254539|ref|YP_004597646.1| - 2.4e-61 206.3 0.0 3.2e-61 205.9 0.0 1.2 1 0 0 1 1 1 1 CoA-transferase family III B12-binding PF02310.14 gi|336254540|ref|YP_004597647.1| - 1.2e-15 57.4 1.1 1.5e-15 57.0 0.8 1.2 1 0 0 1 1 1 1 B12 binding domain Glyco_transf_28 PF03033.15 gi|336254540|ref|YP_004597647.1| - 0.0033 17.2 0.8 0.13 12.0 0.4 2.1 2 0 0 2 2 2 1 Glycosyltransferase family 28 N-terminal domain Peripla_BP_6 PF13458.1 gi|336254540|ref|YP_004597647.1| - 0.004 16.5 0.6 0.059 12.7 0.6 1.9 1 1 1 2 2 2 2 Periplasmic binding protein ADH_zinc_N PF00107.21 gi|336254540|ref|YP_004597647.1| - 0.019 14.5 0.0 0.066 12.7 0.0 1.8 1 1 1 2 2 2 0 Zinc-binding dehydrogenase Met_asp_mut_E PF06368.6 gi|336254541|ref|YP_004597648.1| - 5.3e-184 611.5 0.0 6.1e-184 611.3 0.0 1.0 1 0 0 1 1 1 1 Methylaspartate mutase E chain (MutE) MAAL_C PF07476.6 gi|336254542|ref|YP_004597649.1| - 1.3e-114 381.2 0.0 1.9e-114 380.7 0.0 1.2 1 0 0 1 1 1 1 Methylaspartate ammonia-lyase C-terminus MAAL_N PF05034.8 gi|336254542|ref|YP_004597649.1| - 7.4e-67 224.0 0.8 7.4e-67 224.0 0.5 1.7 2 0 0 2 2 2 1 Methylaspartate ammonia-lyase N-terminus MR_MLE_C PF13378.1 gi|336254542|ref|YP_004597649.1| - 1.9e-10 40.6 0.4 7.4e-10 38.7 0.1 2.0 2 0 0 2 2 2 1 Enolase C-terminal domain-like ASL_C2 PF14698.1 gi|336254542|ref|YP_004597649.1| - 0.019 15.0 0.2 0.64 10.1 0.1 2.6 2 0 0 2 2 2 0 Argininosuccinate lyase C-terminal MaoC_dehydratas PF01575.14 gi|336254543|ref|YP_004597650.1| - 2.6e-08 33.2 0.0 6.9e-06 25.4 0.0 2.3 2 0 0 2 2 2 2 MaoC like domain MaoC_dehydrat_N PF13452.1 gi|336254543|ref|YP_004597650.1| - 5.7e-07 29.3 0.1 0.0076 16.0 0.0 2.6 2 0 0 2 2 2 2 N-terminal half of MaoC dehydratase HpcH_HpaI PF03328.9 gi|336254544|ref|YP_004597651.1| - 2.1e-15 56.2 0.0 8.4e-15 54.2 0.0 2.0 1 1 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family Malate_synthase PF01274.17 gi|336254544|ref|YP_004597651.1| - 0.11 10.4 0.0 0.6 8.0 0.0 2.0 2 1 0 2 2 2 0 Malate synthase OsmC PF02566.14 gi|336254545|ref|YP_004597652.1| - 1.5e-18 66.8 0.0 3.2e-18 65.7 0.0 1.5 2 0 0 2 2 2 1 OsmC-like protein DUF21 PF01595.15 gi|336254546|ref|YP_004597653.1| - 3.2e-51 173.2 3.0 4.1e-51 172.8 2.1 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF21 CorC_HlyC PF03471.12 gi|336254546|ref|YP_004597653.1| - 2.7e-21 75.1 1.2 8.9e-21 73.4 0.8 2.0 1 0 0 1 1 1 1 Transporter associated domain CBS PF00571.23 gi|336254546|ref|YP_004597653.1| - 5.7e-21 74.0 5.1 1.9e-10 40.3 0.7 2.5 2 0 0 2 2 2 2 CBS domain EF-hand_7 PF13499.1 gi|336254546|ref|YP_004597653.1| - 0.13 12.4 0.1 1.1 9.4 0.0 2.3 2 0 0 2 2 2 0 EF-hand domain pair DUF2064 PF09837.4 gi|336254547|ref|YP_004597654.1| - 0.00028 20.4 0.0 0.00042 19.9 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2064) Abhydrolase_6 PF12697.2 gi|336254549|ref|YP_004597656.1| - 3.8e-36 125.0 6.7 4.4e-36 124.8 4.6 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|336254549|ref|YP_004597656.1| - 2.5e-19 69.4 0.1 2.4e-18 66.2 0.1 2.0 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|336254549|ref|YP_004597656.1| - 1.5e-16 60.6 0.1 1.6e-14 54.0 0.0 2.1 1 1 0 2 2 2 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.3 gi|336254549|ref|YP_004597656.1| - 1.5e-08 34.3 0.2 4.2e-08 32.9 0.2 1.7 1 0 0 1 1 1 1 Putative lysophospholipase Peptidase_S9 PF00326.16 gi|336254549|ref|YP_004597656.1| - 0.016 14.4 0.0 0.088 12.0 0.0 2.1 2 1 1 3 3 3 0 Prolyl oligopeptidase family Thioesterase PF00975.15 gi|336254549|ref|YP_004597656.1| - 0.025 14.8 0.1 0.03 14.5 0.1 1.3 1 0 0 1 1 1 0 Thioesterase domain Ser_hydrolase PF06821.8 gi|336254549|ref|YP_004597656.1| - 0.049 13.2 0.1 0.11 12.0 0.0 1.7 2 0 0 2 2 2 0 Serine hydrolase Abhydro_lipase PF04083.11 gi|336254549|ref|YP_004597656.1| - 0.054 12.8 0.0 0.16 11.3 0.0 1.8 2 0 0 2 2 2 0 Partial alpha/beta-hydrolase lipase region Esterase PF00756.15 gi|336254549|ref|YP_004597656.1| - 0.12 11.7 0.2 0.32 10.3 0.1 1.7 1 1 0 1 1 1 0 Putative esterase Abhydrolase_4 PF08386.5 gi|336254549|ref|YP_004597656.1| - 0.13 12.1 0.1 1.1 9.2 0.0 2.5 3 1 0 3 3 3 0 TAP-like protein UDG PF03167.14 gi|336254550|ref|YP_004597657.1| - 4.8e-19 68.3 0.0 6.2e-19 67.9 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily ParA PF10609.4 gi|336254552|ref|YP_004597659.1| - 7.2e-34 115.5 0.1 1.3e-33 114.7 0.1 1.4 1 0 0 1 1 1 1 ParA/MinD ATPase like CbiA PF01656.18 gi|336254552|ref|YP_004597659.1| - 3.8e-19 68.8 0.0 5.9e-19 68.2 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain DUF59 PF01883.14 gi|336254552|ref|YP_004597659.1| - 6.9e-14 51.5 0.8 1.6e-13 50.4 0.5 1.7 1 0 0 1 1 1 1 Domain of unknown function DUF59 AAA_31 PF13614.1 gi|336254552|ref|YP_004597659.1| - 8.3e-09 35.5 0.0 1.9e-07 31.1 0.0 2.2 1 1 0 1 1 1 1 AAA domain MipZ PF09140.6 gi|336254552|ref|YP_004597659.1| - 1e-08 34.6 0.0 1.4e-08 34.1 0.0 1.2 1 0 0 1 1 1 1 ATPase MipZ Fer4_NifH PF00142.13 gi|336254552|ref|YP_004597659.1| - 1.4e-06 27.6 0.0 0.011 14.9 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family VirC1 PF07015.6 gi|336254552|ref|YP_004597659.1| - 0.00012 21.2 0.0 0.0002 20.4 0.0 1.3 1 0 0 1 1 1 1 VirC1 protein ArsA_ATPase PF02374.10 gi|336254552|ref|YP_004597659.1| - 0.00023 20.3 4.2 0.00041 19.4 0.7 2.1 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_25 PF13481.1 gi|336254552|ref|YP_004597659.1| - 0.0012 18.2 0.0 0.0017 17.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|336254552|ref|YP_004597659.1| - 0.077 13.8 0.0 0.16 12.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_26 PF13500.1 gi|336254552|ref|YP_004597659.1| - 0.1 12.1 0.0 6.5 6.3 0.0 2.3 2 0 0 2 2 2 0 AAA domain APS_kinase PF01583.15 gi|336254552|ref|YP_004597659.1| - 0.12 11.9 0.0 0.32 10.6 0.0 1.7 2 0 0 2 2 2 0 Adenylylsulphate kinase AAA_19 PF13245.1 gi|336254552|ref|YP_004597659.1| - 0.84 9.4 4.6 13 5.6 0.3 2.8 2 1 0 2 2 2 0 Part of AAA domain zf-Mss51 PF13824.1 gi|336254553|ref|YP_004597660.1| - 0.013 15.3 0.0 0.28 11.0 0.0 2.2 2 0 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Acetone_carb_G PF08882.6 gi|336254553|ref|YP_004597660.1| - 0.016 15.2 0.1 1.4 9.0 0.1 2.1 1 1 1 2 2 2 0 Acetone carboxylase gamma subunit zf-ribbon_3 PF13248.1 gi|336254553|ref|YP_004597660.1| - 0.034 13.3 0.1 0.034 13.3 0.1 2.0 3 0 0 3 3 3 0 zinc-ribbon domain Nudix_N_2 PF14803.1 gi|336254553|ref|YP_004597660.1| - 0.065 12.9 0.4 0.17 11.5 0.1 2.0 2 0 0 2 2 2 0 Nudix N-terminal zinc_ribbon_2 PF13240.1 gi|336254553|ref|YP_004597660.1| - 0.069 12.6 1.1 0.33 10.5 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DUF2296 PF10058.4 gi|336254553|ref|YP_004597660.1| - 0.076 12.7 0.1 0.19 11.4 0.0 1.7 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) ARL2_Bind_BART PF11527.3 gi|336254554|ref|YP_004597661.1| - 0.071 12.9 0.6 0.14 11.9 0.4 1.7 1 1 0 1 1 1 0 The ARF-like 2 binding protein BART IF-2B PF01008.12 gi|336254555|ref|YP_004597662.1| - 8.8e-49 165.9 0.7 1e-48 165.7 0.5 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family MerR-DNA-bind PF09278.6 gi|336254555|ref|YP_004597662.1| - 0.53 10.7 2.7 4.2 7.8 0.4 2.3 2 0 0 2 2 2 0 MerR, DNA binding DUF1451 PF07295.6 gi|336254555|ref|YP_004597662.1| - 1 9.1 3.4 2.4 7.9 0.3 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1451) ThuA PF06283.6 gi|336254556|ref|YP_004597663.1| - 1.5e-46 158.8 0.1 1.7e-46 158.6 0.1 1.0 1 0 0 1 1 1 1 Trehalose utilisation GFO_IDH_MocA PF01408.17 gi|336254557|ref|YP_004597664.1| - 6.4e-31 107.3 1.5 2.1e-30 105.7 0.3 2.0 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|336254557|ref|YP_004597664.1| - 1.2e-10 41.1 0.0 2.5e-10 40.1 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain NAD_binding_2 PF03446.10 gi|336254557|ref|YP_004597664.1| - 0.0002 21.2 0.1 0.00056 19.7 0.1 1.7 1 1 1 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|336254557|ref|YP_004597664.1| - 0.0006 20.1 0.1 0.0013 19.1 0.0 1.6 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|336254557|ref|YP_004597664.1| - 0.0027 16.8 0.0 0.0056 15.8 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_3 PF03447.11 gi|336254557|ref|YP_004597664.1| - 0.014 15.7 0.6 0.026 14.9 0.4 1.5 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain IlvN PF07991.7 gi|336254557|ref|YP_004597664.1| - 0.015 14.6 0.1 0.029 13.7 0.0 1.5 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain Proteasome PF00227.21 gi|336254558|ref|YP_004597665.1| - 2e-44 151.1 0.1 2.4e-44 150.9 0.1 1.0 1 0 0 1 1 1 1 Proteasome subunit DUF555 PF04475.7 gi|336254560|ref|YP_004597667.1| - 1.9e-47 159.4 0.1 2.2e-47 159.2 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF555) zinc_ribbon_2 PF13240.1 gi|336254560|ref|YP_004597667.1| - 0.11 12.0 0.2 0.18 11.3 0.1 1.3 1 0 0 1 1 1 0 zinc-ribbon domain CBS PF00571.23 gi|336254561|ref|YP_004597668.1| - 2.2e-21 75.3 0.1 1.3e-11 44.1 0.0 2.4 2 0 0 2 2 2 2 CBS domain HTH_31 PF13560.1 gi|336254561|ref|YP_004597668.1| - 5.7e-13 48.8 2.7 1.2e-12 47.8 1.9 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|336254561|ref|YP_004597668.1| - 6.8e-12 45.0 0.3 1.7e-11 43.8 0.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|336254561|ref|YP_004597668.1| - 6e-11 42.2 0.0 1.2e-10 41.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|336254561|ref|YP_004597668.1| - 2.4e-05 23.8 0.4 0.00022 20.7 0.1 2.4 1 1 0 2 2 2 1 Helix-turn-helix domain HTH_37 PF13744.1 gi|336254561|ref|YP_004597668.1| - 6.2e-05 22.7 0.1 0.00017 21.3 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|336254561|ref|YP_004597668.1| - 0.0012 19.0 0.0 0.0024 18.0 0.0 1.6 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_24 PF13412.1 gi|336254561|ref|YP_004597668.1| - 0.009 15.3 0.2 0.2 11.0 0.0 2.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding CGI-121 PF08617.5 gi|336254561|ref|YP_004597668.1| - 0.05 13.2 0.2 0.076 12.6 0.2 1.3 1 1 0 1 1 1 0 Kinase binding protein CGI-121 MarR PF01047.17 gi|336254561|ref|YP_004597668.1| - 0.053 13.2 0.1 0.91 9.2 0.0 2.5 2 0 0 2 2 2 0 MarR family Sigma70_r4 PF04545.11 gi|336254561|ref|YP_004597668.1| - 0.11 11.8 0.1 1.7 8.0 0.1 2.7 3 0 0 3 3 3 0 Sigma-70, region 4 DUF3618 PF12277.3 gi|336254561|ref|YP_004597668.1| - 0.16 12.0 0.7 0.16 12.0 0.5 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3618) HTH_20 PF12840.2 gi|336254562|ref|YP_004597669.1| - 3.7e-10 39.4 0.1 5.5e-10 38.8 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|336254562|ref|YP_004597669.1| - 2.9e-06 26.8 0.0 4.1e-06 26.4 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|336254562|ref|YP_004597669.1| - 0.0088 15.7 0.0 0.013 15.1 0.0 1.4 1 0 0 1 1 1 1 MarR family TFIIE_beta PF02186.10 gi|336254562|ref|YP_004597669.1| - 0.015 15.2 0.0 0.024 14.6 0.0 1.4 1 0 0 1 1 1 0 TFIIE beta subunit core domain HTH_IclR PF09339.5 gi|336254562|ref|YP_004597669.1| - 0.018 14.6 0.0 0.035 13.7 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain Rrf2 PF02082.15 gi|336254562|ref|YP_004597669.1| - 0.022 14.8 0.0 0.035 14.2 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator DUF742 PF05331.6 gi|336254562|ref|YP_004597669.1| - 0.067 12.7 0.1 0.098 12.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF742) HTH_5 PF01022.15 gi|336254562|ref|YP_004597669.1| - 0.068 12.8 0.0 0.1 12.3 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|336254562|ref|YP_004597669.1| - 0.13 11.6 0.0 0.21 11.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding CobA_CobO_BtuR PF02572.10 gi|336254563|ref|YP_004597670.1| - 7.7e-56 188.4 0.0 9.3e-56 188.1 0.0 1.1 1 0 0 1 1 1 1 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP ABC_tran PF00005.22 gi|336254564|ref|YP_004597671.1| - 2.1e-23 83.1 0.0 3.8e-23 82.3 0.0 1.4 2 0 0 2 2 1 1 ABC transporter AAA_21 PF13304.1 gi|336254564|ref|YP_004597671.1| - 2.2e-12 47.5 0.0 5.5e-07 29.8 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|336254564|ref|YP_004597671.1| - 4.5e-05 22.6 0.0 0.00076 18.6 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.1 gi|336254564|ref|YP_004597671.1| - 0.00016 22.0 0.1 0.00025 21.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|336254564|ref|YP_004597671.1| - 0.00045 19.6 0.0 0.00083 18.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|336254564|ref|YP_004597671.1| - 0.00075 19.5 0.0 0.002 18.1 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain AAA_13 PF13166.1 gi|336254564|ref|YP_004597671.1| - 0.0043 15.5 0.1 0.78 8.1 0.0 2.0 2 0 0 2 2 2 2 AAA domain ArgK PF03308.11 gi|336254564|ref|YP_004597671.1| - 0.0076 15.0 0.1 0.011 14.4 0.0 1.2 1 0 0 1 1 1 1 ArgK protein AAA_30 PF13604.1 gi|336254564|ref|YP_004597671.1| - 0.047 13.2 0.0 0.12 11.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|336254564|ref|YP_004597671.1| - 0.054 13.4 0.1 0.47 10.3 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|336254564|ref|YP_004597671.1| - 0.066 14.0 0.0 0.11 13.2 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|336254564|ref|YP_004597671.1| - 0.067 12.6 0.0 0.17 11.3 0.0 1.6 2 0 0 2 2 2 0 AAA-like domain AAA_33 PF13671.1 gi|336254564|ref|YP_004597671.1| - 0.072 12.9 0.2 0.39 10.5 0.2 2.0 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.17 gi|336254564|ref|YP_004597671.1| - 0.081 12.3 0.0 0.14 11.6 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain SMC_N PF02463.14 gi|336254564|ref|YP_004597671.1| - 0.093 11.9 0.0 6.2 5.9 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|336254564|ref|YP_004597671.1| - 0.13 11.4 0.0 0.15 11.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 MukB PF04310.7 gi|336254564|ref|YP_004597671.1| - 0.14 11.4 0.0 0.26 10.6 0.0 1.4 1 0 0 1 1 1 0 MukB N-terminal DUF3098 PF11297.3 gi|336254565|ref|YP_004597672.1| - 0.43 10.3 4.0 6.6 6.5 0.0 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF3098) Iron_transport PF10634.4 gi|336254566|ref|YP_004597673.1| - 2.5e-06 27.4 0.0 5.5e-05 23.0 0.0 2.3 2 0 0 2 2 2 1 Fe2+ transport protein TAT_signal PF10518.4 gi|336254566|ref|YP_004597673.1| - 3.4 7.9 8.2 16 5.8 5.7 2.2 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF2243 PF10002.4 gi|336254567|ref|YP_004597674.1| - 2.4e-32 111.7 9.4 2.8e-32 111.4 6.5 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2243) Peptidase_A8 PF01252.13 gi|336254567|ref|YP_004597674.1| - 0.062 12.9 3.7 0.035 13.7 1.2 1.6 2 0 0 2 2 2 0 Signal peptidase (SPase) II FtsX PF02687.16 gi|336254567|ref|YP_004597674.1| - 0.83 9.4 4.7 0.83 9.4 0.9 2.1 2 0 0 2 2 2 0 FtsX-like permease family GATase_3 PF07685.9 gi|336254568|ref|YP_004597675.1| - 1.4e-34 118.9 0.0 4.5e-34 117.3 0.0 1.8 2 0 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|336254568|ref|YP_004597675.1| - 5.7e-25 87.8 0.0 9.1e-25 87.1 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|336254568|ref|YP_004597675.1| - 4e-18 65.7 0.0 1.5e-17 63.8 0.0 1.9 1 1 0 1 1 1 1 AAA domain MobB PF03205.9 gi|336254568|ref|YP_004597675.1| - 0.032 13.9 0.1 0.24 11.0 0.0 2.4 3 0 0 3 3 3 0 Molybdopterin guanine dinucleotide synthesis protein B RHH_1 PF01402.16 gi|336254569|ref|YP_004597676.1| - 0.12 12.2 0.0 0.34 10.8 0.0 1.7 1 0 0 1 1 1 0 Ribbon-helix-helix protein, copG family MTH865 PF07747.6 gi|336254570|ref|YP_004597677.1| - 1.1e-24 85.7 0.1 1.3e-24 85.5 0.1 1.0 1 0 0 1 1 1 1 MTH865-like family HTH_10 PF04967.7 gi|336254571|ref|YP_004597678.1| - 2.7e-18 65.2 0.0 1.1e-17 63.3 0.0 2.0 2 0 0 2 2 2 1 HTH DNA binding domain PAS_4 PF08448.5 gi|336254571|ref|YP_004597678.1| - 3.6e-14 52.7 0.7 3.6e-14 52.7 0.5 3.7 4 0 0 4 4 4 1 PAS fold GAF_2 PF13185.1 gi|336254571|ref|YP_004597678.1| - 5.7e-13 49.6 2.1 9.6e-13 48.8 0.5 2.2 2 0 0 2 2 2 1 GAF domain PAS_9 PF13426.1 gi|336254571|ref|YP_004597678.1| - 4.1e-08 33.5 0.1 2.1e-07 31.2 0.0 2.4 2 0 0 2 2 2 1 PAS domain GAF PF01590.21 gi|336254571|ref|YP_004597678.1| - 1.2e-06 28.7 1.4 2.2e-06 27.8 0.1 2.2 2 1 0 2 2 2 1 GAF domain GAF_3 PF13492.1 gi|336254571|ref|YP_004597678.1| - 1.3e-06 28.5 0.1 5.2e-06 26.5 0.1 2.1 1 0 0 1 1 1 1 GAF domain Sigma70_r4_2 PF08281.7 gi|336254571|ref|YP_004597678.1| - 0.0014 18.0 0.0 0.0049 16.2 0.0 2.0 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4 PF04545.11 gi|336254571|ref|YP_004597678.1| - 0.0022 17.2 0.0 0.012 14.9 0.0 2.3 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_20 PF12840.2 gi|336254571|ref|YP_004597678.1| - 0.02 14.6 0.1 0.16 11.7 0.0 2.7 2 1 0 2 2 2 0 Helix-turn-helix domain HTH_5 PF01022.15 gi|336254571|ref|YP_004597678.1| - 0.17 11.5 0.4 0.96 9.1 0.0 2.3 3 0 0 3 3 3 0 Bacterial regulatory protein, arsR family ThiI PF02568.9 gi|336254572|ref|YP_004597679.1| - 2.4e-43 147.9 0.0 3.4e-43 147.3 0.0 1.2 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.12 gi|336254572|ref|YP_004597679.1| - 4.9e-17 62.1 0.0 1e-16 61.1 0.0 1.5 1 0 0 1 1 1 1 THUMP domain QueC PF06508.8 gi|336254572|ref|YP_004597679.1| - 5.7e-05 22.4 0.0 0.36 10.0 0.0 2.5 2 1 0 2 2 2 2 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.11 gi|336254572|ref|YP_004597679.1| - 0.00084 17.9 0.0 0.0012 17.4 0.0 1.2 1 0 0 1 1 1 1 tRNA methyl transferase ATP_bind_3 PF01171.15 gi|336254572|ref|YP_004597679.1| - 0.023 14.2 0.1 0.26 10.7 0.0 2.3 1 1 0 1 1 1 0 PP-loop family MFS_1 PF07690.11 gi|336254573|ref|YP_004597680.1| - 6.2e-44 150.1 54.9 2.3e-26 92.3 19.5 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|336254573|ref|YP_004597680.1| - 5.1e-07 28.4 20.7 1e-06 27.4 14.3 1.7 1 1 0 1 1 1 1 MFS/sugar transport protein MFS_1_like PF12832.2 gi|336254573|ref|YP_004597680.1| - 0.0014 18.3 4.2 0.005 16.6 0.1 3.5 4 0 0 4 4 4 1 MFS_1 like family OATP PF03137.15 gi|336254573|ref|YP_004597680.1| - 0.0016 16.5 0.4 0.0035 15.4 0.3 1.5 1 0 0 1 1 1 1 Organic Anion Transporter Polypeptide (OATP) family PTR2 PF00854.16 gi|336254573|ref|YP_004597680.1| - 0.014 14.2 4.3 0.041 12.6 3.0 1.8 1 0 0 1 1 1 0 POT family AdoMet_Synthase PF01941.14 gi|336254574|ref|YP_004597681.1| - 4.6e-177 588.4 8.6 5.3e-177 588.2 6.0 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) S-AdoMet_synt_N PF00438.15 gi|336254574|ref|YP_004597681.1| - 0.014 15.6 0.5 0.048 13.8 0.0 2.1 2 0 0 2 2 2 0 S-adenosylmethionine synthetase, N-terminal domain Cation_efflux PF01545.16 gi|336254574|ref|YP_004597681.1| - 0.06 12.4 0.3 0.12 11.3 0.2 1.4 1 0 0 1 1 1 0 Cation efflux family Asp23 PF03780.8 gi|336254574|ref|YP_004597681.1| - 0.33 11.2 6.7 4.6 7.5 1.3 3.5 2 1 0 2 2 2 0 Asp23 family CYTH PF01928.16 gi|336254575|ref|YP_004597682.1| - 2.4e-36 125.1 7.2 9.9e-36 123.1 5.0 1.8 1 1 0 1 1 1 1 CYTH domain FKBP_C PF00254.23 gi|336254576|ref|YP_004597683.1| - 2.2e-08 33.9 0.8 2.2e-08 33.9 0.6 1.9 2 1 0 2 2 2 1 FKBP-type peptidyl-prolyl cis-trans isomerase ScdA_N PF04405.9 gi|336254576|ref|YP_004597683.1| - 0.028 13.8 0.2 0.068 12.5 0.2 1.7 1 0 0 1 1 1 0 Domain of Unknown function (DUF542) KaiC PF06745.8 gi|336254577|ref|YP_004597684.1| - 2.6e-07 29.9 0.0 0.00033 19.8 0.0 2.2 1 1 0 2 2 2 2 KaiC AAA_25 PF13481.1 gi|336254577|ref|YP_004597684.1| - 0.0051 16.2 0.5 1.6 8.0 0.1 2.3 2 1 0 2 2 2 2 AAA domain OTCace_N PF02729.16 gi|336254578|ref|YP_004597685.1| - 2.4e-45 153.6 0.0 1.8e-44 150.8 0.0 2.0 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.19 gi|336254578|ref|YP_004597685.1| - 1.5e-38 132.1 0.0 2.1e-38 131.6 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain PyrI PF01948.13 gi|336254579|ref|YP_004597686.1| - 3e-36 123.3 0.5 3.8e-36 122.9 0.4 1.1 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.10 gi|336254579|ref|YP_004597686.1| - 2.8e-16 58.6 0.2 4.7e-16 57.9 0.1 1.4 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain HTH_10 PF04967.7 gi|336254584|ref|YP_004597691.1| - 1.8e-18 65.8 0.1 3.1e-18 65.1 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_24 PF13412.1 gi|336254584|ref|YP_004597691.1| - 0.00031 20.0 0.0 0.00063 19.0 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|336254584|ref|YP_004597691.1| - 0.00049 19.7 0.2 0.0014 18.2 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_AsnC-type PF13404.1 gi|336254584|ref|YP_004597691.1| - 0.0063 16.0 0.1 0.014 14.9 0.1 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain UPF0122 PF04297.9 gi|336254584|ref|YP_004597691.1| - 0.027 14.4 0.0 0.045 13.7 0.0 1.3 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like FbpA PF05833.6 gi|336254584|ref|YP_004597691.1| - 0.041 12.4 0.0 0.054 12.0 0.0 1.1 1 0 0 1 1 1 0 Fibronectin-binding protein A N-terminus (FbpA) Sigma70_r4 PF04545.11 gi|336254584|ref|YP_004597691.1| - 0.058 12.7 0.1 0.11 11.8 0.1 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 Phage_CI_repr PF07022.8 gi|336254584|ref|YP_004597691.1| - 0.094 12.8 0.0 0.23 11.5 0.0 1.6 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain BPD_transp_1 PF00528.17 gi|336254585|ref|YP_004597692.1| - 5.7e-16 58.5 13.7 5.7e-16 58.5 9.5 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_11 PF13531.1 gi|336254586|ref|YP_004597693.1| - 3.4e-27 95.5 0.1 4.7e-27 95.1 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|336254586|ref|YP_004597693.1| - 1.3e-05 25.0 0.0 0.00029 20.6 0.0 2.2 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein MobB PF03205.9 gi|336254587|ref|YP_004597694.1| - 5.4e-20 71.5 0.0 1.7e-16 60.1 0.0 2.2 2 0 0 2 2 2 2 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.1 gi|336254587|ref|YP_004597694.1| - 6.3e-06 26.3 0.0 6.9e-05 22.9 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain PduV-EutP PF10662.4 gi|336254587|ref|YP_004597694.1| - 0.0018 17.7 0.0 0.003 17.0 0.0 1.3 1 0 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation GTP_EFTU PF00009.22 gi|336254587|ref|YP_004597694.1| - 0.0018 17.7 0.1 0.004 16.6 0.0 1.6 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain MMR_HSR1 PF01926.18 gi|336254587|ref|YP_004597694.1| - 0.0028 17.5 0.0 0.0051 16.7 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase SRPRB PF09439.5 gi|336254587|ref|YP_004597694.1| - 0.0036 16.5 0.0 0.0054 15.9 0.0 1.3 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit AAA_18 PF13238.1 gi|336254587|ref|YP_004597694.1| - 0.0038 17.5 0.0 0.018 15.3 0.0 1.9 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|336254587|ref|YP_004597694.1| - 0.015 14.4 0.0 0.12 11.5 0.0 1.9 1 1 1 2 2 2 0 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|336254587|ref|YP_004597694.1| - 0.02 15.7 0.0 0.053 14.3 0.0 1.7 2 0 0 2 2 2 0 AAA domain cobW PF02492.14 gi|336254587|ref|YP_004597694.1| - 0.02 14.3 0.0 0.063 12.7 0.0 1.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_29 PF13555.1 gi|336254587|ref|YP_004597694.1| - 0.021 14.3 0.0 0.045 13.2 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|336254587|ref|YP_004597694.1| - 0.026 14.6 0.0 0.067 13.3 0.0 1.7 2 0 0 2 2 2 0 AAA domain T2SE PF00437.15 gi|336254587|ref|YP_004597694.1| - 0.044 12.6 0.0 0.061 12.2 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein CbiA PF01656.18 gi|336254587|ref|YP_004597694.1| - 0.056 12.8 0.0 0.15 11.4 0.0 1.6 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_33 PF13671.1 gi|336254587|ref|YP_004597694.1| - 0.06 13.2 0.0 0.1 12.4 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|336254587|ref|YP_004597694.1| - 0.062 12.7 0.0 0.29 10.4 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|336254587|ref|YP_004597694.1| - 0.065 13.1 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|336254587|ref|YP_004597694.1| - 0.071 12.7 0.0 0.16 11.6 0.0 1.5 2 0 0 2 2 2 0 NACHT domain AAA_28 PF13521.1 gi|336254587|ref|YP_004597694.1| - 0.078 12.9 0.1 0.22 11.4 0.0 1.8 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.10 gi|336254587|ref|YP_004597694.1| - 0.09 12.4 0.0 0.19 11.4 0.0 1.5 2 0 0 2 2 2 0 NTPase UPF0079 PF02367.12 gi|336254587|ref|YP_004597694.1| - 0.12 11.9 0.0 0.19 11.3 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 RNA_helicase PF00910.17 gi|336254587|ref|YP_004597694.1| - 0.14 12.3 0.0 0.2 11.8 0.0 1.3 1 0 0 1 1 1 0 RNA helicase AAA_5 PF07728.9 gi|336254587|ref|YP_004597694.1| - 0.15 11.8 0.0 0.22 11.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) Arch_ATPase PF01637.13 gi|336254587|ref|YP_004597694.1| - 0.16 11.6 0.0 0.27 10.8 0.0 1.6 1 1 0 1 1 1 0 Archaeal ATPase Nitrate_red_del PF02613.10 gi|336254588|ref|YP_004597695.1| - 6.8e-15 55.1 1.5 1.5e-14 53.9 1.0 1.6 1 1 0 1 1 1 1 Nitrate reductase delta subunit Fer4_11 PF13247.1 gi|336254589|ref|YP_004597696.1| - 6.5e-30 102.9 7.6 6.5e-30 102.9 5.3 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|336254589|ref|YP_004597696.1| - 2e-07 31.2 18.7 6e-05 23.3 5.0 3.5 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|336254589|ref|YP_004597696.1| - 2.8e-06 27.0 21.0 0.003 17.3 4.5 3.3 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|336254589|ref|YP_004597696.1| - 3.1e-06 26.7 18.3 0.0008 19.1 1.0 4.6 4 0 0 4 4 4 1 4Fe-4S binding domain Fer4_9 PF13187.1 gi|336254589|ref|YP_004597696.1| - 0.00016 21.8 19.8 0.098 12.9 4.9 3.6 2 1 2 4 4 4 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|336254589|ref|YP_004597696.1| - 0.00061 19.2 18.8 0.032 13.8 0.6 4.7 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_6 PF12837.2 gi|336254589|ref|YP_004597696.1| - 0.00084 19.1 23.3 1 9.3 1.9 4.7 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_8 PF13183.1 gi|336254589|ref|YP_004597696.1| - 0.0009 19.2 14.3 0.15 12.1 0.0 3.2 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|336254589|ref|YP_004597696.1| - 0.0025 17.6 20.2 0.023 14.5 0.5 3.3 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|336254589|ref|YP_004597696.1| - 0.031 14.6 10.8 0.14 12.5 0.2 3.7 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_17 PF13534.1 gi|336254589|ref|YP_004597696.1| - 0.086 13.2 18.2 0.21 11.9 0.1 3.9 2 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|336254589|ref|YP_004597696.1| - 0.72 10.6 16.8 8.5 7.2 0.6 4.0 3 1 0 3 3 3 0 4Fe-4S double cluster binding domain Fer4_4 PF12800.2 gi|336254589|ref|YP_004597696.1| - 4.8 7.7 24.6 2.5 8.6 1.5 4.4 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_19 PF06902.6 gi|336254589|ref|YP_004597696.1| - 5.1 6.9 8.4 0.14 11.9 0.9 2.1 2 0 0 2 2 1 0 Divergent 4Fe-4S mono-cluster Molybdopterin PF00384.17 gi|336254590|ref|YP_004597697.1| - 1.5e-34 119.4 0.1 3.3e-30 105.1 0.0 2.2 2 0 0 2 2 2 2 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|336254590|ref|YP_004597697.1| - 0.00012 21.8 0.5 0.00081 19.1 0.0 2.6 3 0 0 3 3 3 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|336254590|ref|YP_004597697.1| - 0.013 15.3 0.1 0.036 13.8 0.0 1.8 1 0 0 1 1 1 0 Molybdopterin oxidoreductase Fe4S4 domain CbiA PF01656.18 gi|336254591|ref|YP_004597698.1| - 8.1e-15 54.7 0.0 1.3e-14 54.1 0.0 1.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.4 gi|336254591|ref|YP_004597698.1| - 6e-14 51.6 0.1 1.1e-13 50.8 0.0 1.4 1 0 0 1 1 1 1 ParA/MinD ATPase like AAA_31 PF13614.1 gi|336254591|ref|YP_004597698.1| - 2.3e-06 27.6 0.1 1.5e-05 25.0 0.0 2.0 2 0 0 2 2 2 1 AAA domain MipZ PF09140.6 gi|336254591|ref|YP_004597698.1| - 0.00024 20.2 0.1 0.00038 19.6 0.1 1.2 1 0 0 1 1 1 1 ATPase MipZ VirC1 PF07015.6 gi|336254591|ref|YP_004597698.1| - 0.0021 17.1 0.1 0.0053 15.8 0.1 1.6 2 0 0 2 2 2 1 VirC1 protein ArsA_ATPase PF02374.10 gi|336254591|ref|YP_004597698.1| - 0.0026 16.8 0.9 0.0041 16.2 0.6 1.2 1 0 0 1 1 1 1 Anion-transporting ATPase DUF59 PF01883.14 gi|336254591|ref|YP_004597698.1| - 0.0027 17.6 2.0 0.022 14.7 0.9 2.8 2 0 0 2 2 2 1 Domain of unknown function DUF59 AAA_26 PF13500.1 gi|336254591|ref|YP_004597698.1| - 0.0077 15.8 0.2 0.28 10.7 0.2 2.2 2 0 0 2 2 2 1 AAA domain LpxK PF02606.9 gi|336254591|ref|YP_004597698.1| - 0.018 13.9 0.3 0.028 13.3 0.2 1.2 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase YhjQ PF06564.7 gi|336254591|ref|YP_004597698.1| - 0.075 12.3 0.1 0.19 11.0 0.1 1.6 2 0 0 2 2 2 0 YhjQ protein Glyco_transf_4 PF13439.1 gi|336254591|ref|YP_004597698.1| - 0.084 12.5 0.0 0.19 11.4 0.0 1.5 1 0 0 1 1 1 0 Glycosyltransferase Family 4 Hint_2 PF13403.1 gi|336254591|ref|YP_004597698.1| - 0.085 12.7 0.1 0.19 11.6 0.0 1.5 1 0 0 1 1 1 0 Hint domain MobB PF03205.9 gi|336254591|ref|YP_004597698.1| - 0.091 12.4 0.1 0.16 11.6 0.1 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B SRP54 PF00448.17 gi|336254591|ref|YP_004597698.1| - 0.1 12.0 0.0 0.2 11.0 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Polyketide_cyc2 PF10604.4 gi|336254592|ref|YP_004597699.1| - 0.0004 20.5 1.2 0.00047 20.3 0.8 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.15 gi|336254592|ref|YP_004597699.1| - 0.11 12.4 0.0 0.24 11.3 0.0 1.6 1 1 0 1 1 1 0 Polyketide cyclase / dehydrase and lipid transport UbiA PF01040.13 gi|336254593|ref|YP_004597700.1| - 9.3e-34 116.8 20.3 1.2e-33 116.3 14.1 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family RseC_MucC PF04246.7 gi|336254593|ref|YP_004597700.1| - 3.5 7.1 7.4 3.1 7.3 0.0 2.9 3 0 0 3 3 3 0 Positive regulator of sigma(E), RseC/MucC HTH_20 PF12840.2 gi|336254594|ref|YP_004597701.1| - 0.00021 20.9 3.7 0.00045 19.9 1.5 2.2 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|336254594|ref|YP_004597701.1| - 0.047 13.3 0.1 5.7 6.7 0.0 2.5 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family DUF1772 PF08592.6 gi|336254596|ref|YP_004597703.1| - 0.13 12.0 3.1 0.16 11.7 2.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1772) DUF4342 PF14242.1 gi|336254596|ref|YP_004597703.1| - 6 6.7 5.5 2.2 8.1 0.6 2.2 2 1 0 2 2 2 0 Domain of unknown function (DUF4342) TrkA_N PF02254.13 gi|336254597|ref|YP_004597704.1| - 5.9e-21 74.6 1.8 8.9e-21 74.0 0.5 1.9 2 0 0 2 2 1 1 TrkA-N domain DHH PF01368.15 gi|336254597|ref|YP_004597704.1| - 8.9e-18 64.3 1.1 1.3e-16 60.5 0.4 2.3 2 0 0 2 2 2 1 DHH family F420_oxidored PF03807.12 gi|336254597|ref|YP_004597704.1| - 1.7e-09 37.9 0.5 7.1e-09 35.9 0.1 2.2 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_10 PF13460.1 gi|336254597|ref|YP_004597704.1| - 1.1e-07 32.0 1.2 1.1e-07 32.0 0.8 2.4 3 1 0 3 3 2 1 NADH(P)-binding ApbA PF02558.11 gi|336254597|ref|YP_004597704.1| - 1.6e-07 30.9 0.0 4.4e-07 29.4 0.0 1.8 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA Saccharop_dh PF03435.13 gi|336254597|ref|YP_004597704.1| - 2.5e-07 30.0 0.2 5.6e-07 28.8 0.1 1.5 1 0 0 1 1 1 1 Saccharopine dehydrogenase NAD_binding_2 PF03446.10 gi|336254597|ref|YP_004597704.1| - 2.2e-05 24.3 0.0 4.5e-05 23.3 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_7 PF13241.1 gi|336254597|ref|YP_004597704.1| - 2.9e-05 24.2 0.2 0.00011 22.3 0.1 1.9 1 0 0 1 1 1 1 Putative NAD(P)-binding Shikimate_DH PF01488.15 gi|336254597|ref|YP_004597704.1| - 3e-05 24.1 0.0 9.3e-05 22.5 0.0 1.8 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase UDPG_MGDP_dh_N PF03721.9 gi|336254597|ref|YP_004597704.1| - 7.8e-05 22.1 0.0 0.00024 20.5 0.0 1.9 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|336254597|ref|YP_004597704.1| - 8.2e-05 22.3 0.0 0.00018 21.3 0.0 1.6 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus IlvN PF07991.7 gi|336254597|ref|YP_004597704.1| - 0.00013 21.3 0.2 0.00026 20.4 0.1 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain FAD_binding_3 PF01494.14 gi|336254597|ref|YP_004597704.1| - 0.0005 19.2 0.0 0.00095 18.3 0.0 1.4 1 0 0 1 1 1 1 FAD binding domain DAO PF01266.19 gi|336254597|ref|YP_004597704.1| - 0.0017 17.3 0.8 0.0063 15.4 0.0 2.3 2 1 1 3 3 3 1 FAD dependent oxidoreductase 2-Hacid_dh_C PF02826.14 gi|336254597|ref|YP_004597704.1| - 0.0017 17.5 0.0 0.0051 15.9 0.0 1.7 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.13 gi|336254597|ref|YP_004597704.1| - 0.002 17.7 0.0 0.005 16.5 0.0 1.7 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ADH_zinc_N PF00107.21 gi|336254597|ref|YP_004597704.1| - 0.0021 17.6 0.4 0.089 12.3 0.0 3.0 3 0 0 3 3 3 1 Zinc-binding dehydrogenase ThiF PF00899.16 gi|336254597|ref|YP_004597704.1| - 0.0055 16.5 0.2 0.016 15.0 0.2 1.8 1 1 0 1 1 1 1 ThiF family XdhC_C PF13478.1 gi|336254597|ref|YP_004597704.1| - 0.0065 16.7 1.1 0.025 14.8 0.1 2.4 3 1 0 3 3 2 1 XdhC Rossmann domain Epimerase PF01370.16 gi|336254597|ref|YP_004597704.1| - 0.0088 15.5 0.2 0.033 13.6 0.1 1.9 1 1 1 2 2 2 1 NAD dependent epimerase/dehydratase family Pyr_redox_2 PF07992.9 gi|336254597|ref|YP_004597704.1| - 0.013 15.3 0.0 0.024 14.5 0.0 1.5 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|336254597|ref|YP_004597704.1| - 0.028 14.4 0.1 0.071 13.1 0.0 1.7 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain adh_short PF00106.20 gi|336254597|ref|YP_004597704.1| - 0.048 13.5 7.6 0.065 13.1 1.2 3.3 2 1 2 4 4 4 0 short chain dehydrogenase DHHA1 PF02272.14 gi|336254597|ref|YP_004597704.1| - 0.065 12.9 0.0 0.16 11.6 0.0 1.7 1 0 0 1 1 1 0 DHHA1 domain Methyltransf_31 PF13847.1 gi|336254597|ref|YP_004597704.1| - 0.13 11.8 0.1 0.38 10.3 0.0 1.9 2 0 0 2 2 2 0 Methyltransferase domain UPF0126 PF03458.8 gi|336254598|ref|YP_004597705.1| - 9.1e-35 118.1 25.7 6.8e-20 70.4 6.0 2.4 2 1 0 2 2 2 2 UPF0126 domain PRC PF05239.11 gi|336254599|ref|YP_004597706.1| - 4e-11 42.6 1.9 5.2e-11 42.2 1.3 1.1 1 0 0 1 1 1 1 PRC-barrel domain DUF3315 PF11776.3 gi|336254599|ref|YP_004597706.1| - 0.053 13.0 0.3 0.094 12.2 0.2 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3315) AAA_26 PF13500.1 gi|336254600|ref|YP_004597707.1| - 3.1e-33 115.0 0.0 5.3e-33 114.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain DRTGG PF07085.7 gi|336254600|ref|YP_004597707.1| - 5.7e-29 99.8 0.0 2e-28 98.0 0.0 1.9 2 0 0 2 2 2 1 DRTGG domain CbiA PF01656.18 gi|336254600|ref|YP_004597707.1| - 0.0011 18.4 0.1 0.003 17.0 0.1 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ATP-grasp_5 PF13549.1 gi|336254601|ref|YP_004597708.1| - 3.7e-72 242.1 0.5 6.7e-72 241.3 0.1 1.7 2 0 0 2 2 2 1 ATP-grasp domain Succ_CoA_lig PF13607.1 gi|336254601|ref|YP_004597708.1| - 2e-53 179.6 1.2 8.4e-52 174.4 0.1 2.8 3 0 0 3 3 3 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|336254601|ref|YP_004597708.1| - 2.1e-23 82.7 3.1 3e-23 82.1 0.1 2.9 5 0 0 5 5 5 1 CoA binding domain CoA_binding PF02629.14 gi|336254601|ref|YP_004597708.1| - 2.4e-13 50.4 0.1 1e-12 48.3 0.1 2.2 1 0 0 1 1 1 1 CoA binding domain ATP-grasp_2 PF08442.5 gi|336254601|ref|YP_004597708.1| - 0.00029 20.2 0.0 0.00066 19.1 0.0 1.7 1 0 0 1 1 1 1 ATP-grasp domain HRDC PF00570.18 gi|336254601|ref|YP_004597708.1| - 0.034 13.8 0.0 0.083 12.6 0.0 1.6 1 0 0 1 1 1 0 HRDC domain ABC-3 PF00950.12 gi|336254602|ref|YP_004597709.1| - 1.8e-56 191.2 33.1 1.8e-56 191.2 23.0 1.5 2 0 0 2 2 2 1 ABC 3 transport family FecCD PF01032.13 gi|336254602|ref|YP_004597709.1| - 1.1e-05 24.4 33.3 1.1e-05 24.4 23.1 2.0 1 1 0 2 2 2 1 FecCD transport family DUF1294 PF06961.8 gi|336254602|ref|YP_004597709.1| - 3.7 7.5 7.2 1.4 8.9 0.3 3.4 3 0 0 3 3 3 0 Protein of unknown function (DUF1294) DUF2407_C PF13373.1 gi|336254602|ref|YP_004597709.1| - 4.5 7.1 5.8 1.3 8.9 0.6 2.3 2 0 0 2 2 2 0 DUF2407 C-terminal domain ABC_tran PF00005.22 gi|336254603|ref|YP_004597710.1| - 3.5e-31 108.3 0.0 4.7e-31 107.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|336254603|ref|YP_004597710.1| - 1.1e-12 48.5 0.0 5.7e-06 26.5 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|336254603|ref|YP_004597710.1| - 2.1e-05 24.6 0.1 4.4e-05 23.5 0.1 1.5 1 0 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.14 gi|336254603|ref|YP_004597710.1| - 0.00027 20.2 0.1 0.14 11.3 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_33 PF13671.1 gi|336254603|ref|YP_004597710.1| - 0.00086 19.2 0.1 0.0074 16.1 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|336254603|ref|YP_004597710.1| - 0.00087 18.7 0.2 0.0016 17.9 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SbcCD_C PF13558.1 gi|336254603|ref|YP_004597710.1| - 0.001 18.9 0.9 0.019 14.8 0.3 2.6 1 1 1 2 2 2 1 Putative exonuclease SbcCD, C subunit Peripla_BP_4 PF13407.1 gi|336254603|ref|YP_004597710.1| - 0.003 16.9 0.0 0.0046 16.3 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein domain AAA_23 PF13476.1 gi|336254603|ref|YP_004597710.1| - 0.0031 17.8 0.1 0.005 17.1 0.1 1.4 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|336254603|ref|YP_004597710.1| - 0.0037 17.3 0.9 0.048 13.8 0.6 2.1 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|336254603|ref|YP_004597710.1| - 0.013 14.9 1.2 0.56 9.5 0.0 2.8 3 0 0 3 3 3 0 AAA domain NTPase_1 PF03266.10 gi|336254603|ref|YP_004597710.1| - 0.044 13.4 0.0 0.094 12.4 0.0 1.6 2 0 0 2 2 2 0 NTPase Mg_chelatase PF01078.16 gi|336254603|ref|YP_004597710.1| - 0.049 12.7 0.0 0.087 11.9 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_17 PF13207.1 gi|336254603|ref|YP_004597710.1| - 0.049 14.4 0.1 0.36 11.6 0.0 2.1 2 0 0 2 2 2 0 AAA domain MobB PF03205.9 gi|336254603|ref|YP_004597710.1| - 0.055 13.1 0.0 0.17 11.6 0.0 1.8 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B IstB_IS21 PF01695.12 gi|336254603|ref|YP_004597710.1| - 0.07 12.5 0.2 4.2 6.7 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_5 PF07728.9 gi|336254603|ref|YP_004597710.1| - 0.07 12.8 0.1 0.17 11.6 0.1 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) UPF0079 PF02367.12 gi|336254603|ref|YP_004597710.1| - 0.074 12.6 0.1 0.18 11.4 0.1 1.7 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 AAA_19 PF13245.1 gi|336254603|ref|YP_004597710.1| - 0.079 12.7 0.2 0.22 11.2 0.0 1.8 2 0 0 2 2 2 0 Part of AAA domain NACHT PF05729.7 gi|336254603|ref|YP_004597710.1| - 0.082 12.5 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 NACHT domain cobW PF02492.14 gi|336254603|ref|YP_004597710.1| - 0.084 12.3 1.0 0.21 11.0 0.2 1.9 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA PF00004.24 gi|336254603|ref|YP_004597710.1| - 0.13 12.4 0.0 0.73 10.0 0.0 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Thymidylate_kin PF02223.12 gi|336254603|ref|YP_004597710.1| - 0.15 11.4 0.0 0.27 10.5 0.0 1.3 1 0 0 1 1 1 0 Thymidylate kinase ABC_ATPase PF09818.4 gi|336254603|ref|YP_004597710.1| - 0.16 10.5 0.9 0.66 8.4 0.1 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class Arch_ATPase PF01637.13 gi|336254603|ref|YP_004597710.1| - 0.18 11.4 0.0 0.54 9.9 0.0 1.7 2 0 0 2 2 2 0 Archaeal ATPase TroA PF01297.12 gi|336254604|ref|YP_004597711.1| - 1.2e-46 159.0 6.3 1.5e-46 158.7 4.4 1.1 1 0 0 1 1 1 1 Periplasmic solute binding protein family Zip PF02535.17 gi|336254604|ref|YP_004597711.1| - 0.0017 17.4 11.7 0.0021 17.1 8.1 1.1 1 0 0 1 1 1 1 ZIP Zinc transporter ESX-1_EspG PF14011.1 gi|336254604|ref|YP_004597711.1| - 0.0035 16.6 0.5 0.0066 15.7 0.4 1.4 1 0 0 1 1 1 1 EspG family TAT_signal PF10518.4 gi|336254604|ref|YP_004597711.1| - 0.0044 16.9 2.9 0.0044 16.9 2.0 1.8 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence Trypan_PARP PF05887.6 gi|336254604|ref|YP_004597711.1| - 4.2 7.1 8.8 8.7 6.1 6.1 1.6 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) CDC45 PF02724.9 gi|336254604|ref|YP_004597711.1| - 5.5 4.9 15.7 7 4.5 10.9 1.1 1 0 0 1 1 1 0 CDC45-like protein Daxx PF03344.10 gi|336254604|ref|YP_004597711.1| - 7.6 4.8 18.1 11 4.3 12.6 1.2 1 0 0 1 1 1 0 Daxx Family SAPS PF04499.10 gi|336254604|ref|YP_004597711.1| - 8.5 4.8 7.5 11 4.5 5.2 1.1 1 0 0 1 1 1 0 SIT4 phosphatase-associated protein DUF1510 PF07423.6 gi|336254604|ref|YP_004597711.1| - 9.2 5.5 15.2 17 4.6 10.6 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1510) Virul_fac_BrkB PF03631.10 gi|336254605|ref|YP_004597712.1| - 9.6e-46 156.2 25.4 1.2e-45 155.9 17.6 1.1 1 0 0 1 1 1 1 Virulence factor BrkB IncA PF04156.9 gi|336254605|ref|YP_004597712.1| - 3.4e-08 33.3 0.2 3.4e-08 33.3 0.1 3.0 3 0 0 3 3 2 1 IncA protein CENP-F_leu_zip PF10473.4 gi|336254605|ref|YP_004597712.1| - 8.1e-07 28.9 5.1 1.3e-06 28.3 3.5 1.2 1 0 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Filament PF00038.16 gi|336254605|ref|YP_004597712.1| - 0.00062 19.3 6.9 0.00082 18.9 4.8 1.1 1 0 0 1 1 1 1 Intermediate filament protein DUF904 PF06005.7 gi|336254605|ref|YP_004597712.1| - 0.0027 17.9 5.6 0.0027 17.9 3.9 2.2 1 1 1 2 2 2 1 Protein of unknown function (DUF904) bZIP_1 PF00170.16 gi|336254605|ref|YP_004597712.1| - 0.0027 17.6 7.1 0.0049 16.8 4.7 1.6 1 1 0 1 1 1 1 bZIP transcription factor ADIP PF11559.3 gi|336254605|ref|YP_004597712.1| - 0.012 15.5 8.3 0.017 15.0 5.8 1.2 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding ERM PF00769.14 gi|336254605|ref|YP_004597712.1| - 0.029 13.9 15.6 0.05 13.1 10.2 1.6 1 1 1 2 2 2 0 Ezrin/radixin/moesin family GAS PF13851.1 gi|336254605|ref|YP_004597712.1| - 0.035 13.2 3.6 0.062 12.4 2.5 1.4 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding CENP-Q PF13094.1 gi|336254605|ref|YP_004597712.1| - 0.042 13.8 7.9 0.066 13.2 5.5 1.2 1 0 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit APG6 PF04111.7 gi|336254605|ref|YP_004597712.1| - 0.066 12.2 6.9 0.1 11.6 4.8 1.2 1 0 0 1 1 1 0 Autophagy protein Apg6 DUF972 PF06156.8 gi|336254605|ref|YP_004597712.1| - 0.11 12.9 3.4 0.21 11.9 2.0 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF972) Kinetocho_Slk19 PF12709.2 gi|336254605|ref|YP_004597712.1| - 0.14 12.2 6.7 0.46 10.6 0.9 2.2 2 0 0 2 2 2 0 Central kinetochore-associated TSC22 PF01166.13 gi|336254605|ref|YP_004597712.1| - 0.21 11.5 2.5 0.41 10.6 1.8 1.4 1 0 0 1 1 1 0 TSC-22/dip/bun family Mnd1 PF03962.10 gi|336254605|ref|YP_004597712.1| - 0.31 10.6 5.0 0.48 10.0 3.4 1.2 1 0 0 1 1 1 0 Mnd1 family Atg14 PF10186.4 gi|336254605|ref|YP_004597712.1| - 0.59 9.0 6.7 0.88 8.4 4.6 1.2 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 Seryl_tRNA_N PF02403.17 gi|336254605|ref|YP_004597712.1| - 0.9 9.5 5.0 1.5 8.8 3.5 1.3 1 0 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain HALZ PF02183.13 gi|336254605|ref|YP_004597712.1| - 1.1 9.0 8.0 0.19 11.4 1.6 2.1 2 0 0 2 2 2 0 Homeobox associated leucine zipper DivIC PF04977.10 gi|336254605|ref|YP_004597712.1| - 2.8 7.5 13.8 0.34 10.4 0.5 2.7 2 1 1 3 3 2 0 Septum formation initiator Cep57_CLD_2 PF14197.1 gi|336254605|ref|YP_004597712.1| - 4.2 7.3 15.6 9.9 6.1 1.8 2.5 1 1 1 2 2 2 0 Centrosome localisation domain of PPC89 Enkurin PF13864.1 gi|336254605|ref|YP_004597712.1| - 4.3 7.5 8.9 0.17 12.0 1.2 2.0 1 1 1 2 2 2 0 Calmodulin-binding DUF4140 PF13600.1 gi|336254605|ref|YP_004597712.1| - 4.5 7.7 9.9 24 5.4 3.4 2.4 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) Ferritin PF00210.19 gi|336254606|ref|YP_004597713.1| - 9.2e-28 96.7 2.4 1.2e-27 96.4 1.6 1.1 1 0 0 1 1 1 1 Ferritin-like domain DUF2383 PF09537.5 gi|336254606|ref|YP_004597713.1| - 0.005 17.0 1.5 3 8.1 0.1 2.8 2 1 1 3 3 3 2 Domain of unknown function (DUF2383) DUF4003 PF13170.1 gi|336254606|ref|YP_004597713.1| - 0.044 13.0 0.1 0.062 12.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4003) DivIVA PF05103.8 gi|336254606|ref|YP_004597713.1| - 0.18 11.8 3.1 0.83 9.7 0.5 2.6 3 0 0 3 3 3 0 DivIVA protein SH3_6 PF12913.2 gi|336254607|ref|YP_004597714.1| - 0.058 12.6 0.0 0.07 12.3 0.0 1.1 1 0 0 1 1 1 0 SH3 domain of the SH3b1 type Macro PF01661.16 gi|336254608|ref|YP_004597715.1| - 4.1e-28 97.6 0.0 6.4e-28 97.0 0.0 1.3 1 0 0 1 1 1 1 Macro domain CytB6-F_Fe-S PF08802.5 gi|336254609|ref|YP_004597716.1| - 0.15 12.0 0.1 0.26 11.3 0.1 1.4 1 0 0 1 1 1 0 Cytochrome B6-F complex Fe-S subunit TAT_signal PF10518.4 gi|336254609|ref|YP_004597716.1| - 1.7 8.8 3.9 0.42 10.7 0.4 1.8 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence AIRS_C PF02769.17 gi|336254610|ref|YP_004597717.1| - 2.1e-20 73.3 0.4 5.3e-20 71.9 0.0 1.8 2 0 0 2 2 2 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|336254610|ref|YP_004597717.1| - 1.5e-13 50.7 1.7 1.9e-13 50.4 0.2 1.9 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain DUF457 PF04307.9 gi|336254611|ref|YP_004597718.1| - 4e-06 26.2 14.0 7.6e-06 25.3 9.6 1.7 1 1 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) Oleosin PF01277.12 gi|336254611|ref|YP_004597718.1| - 0.072 12.6 2.4 0.2 11.2 1.7 1.7 1 0 0 1 1 1 0 Oleosin DAP10 PF07213.6 gi|336254611|ref|YP_004597718.1| - 0.26 11.0 2.5 0.74 9.6 1.7 1.8 1 0 0 1 1 1 0 DAP10 membrane protein Acetyltransf_1 PF00583.19 gi|336254612|ref|YP_004597719.1| - 7.6e-13 48.3 0.0 1.3e-12 47.5 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|336254612|ref|YP_004597719.1| - 6.7e-09 35.7 0.0 9.3e-09 35.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|336254612|ref|YP_004597719.1| - 3.1e-08 33.8 0.0 4.3e-08 33.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|336254612|ref|YP_004597719.1| - 2.8e-07 30.6 0.0 9.9e-07 28.8 0.0 1.7 1 1 1 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|336254612|ref|YP_004597719.1| - 4.6e-06 26.6 0.0 6.3e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|336254612|ref|YP_004597719.1| - 5e-06 26.1 0.0 8.3e-06 25.4 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.1 gi|336254612|ref|YP_004597719.1| - 0.00014 21.6 0.0 0.00019 21.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|336254612|ref|YP_004597719.1| - 0.005 16.7 0.0 0.0065 16.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|336254612|ref|YP_004597719.1| - 0.0073 16.1 0.0 0.013 15.4 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase CDP-OH_P_transf PF01066.16 gi|336254613|ref|YP_004597720.1| - 2.7e-09 37.2 7.1 2.7e-09 37.2 4.9 2.2 2 0 0 2 2 2 1 CDP-alcohol phosphatidyltransferase Ketoacyl-synt_C PF02801.17 gi|336254613|ref|YP_004597720.1| - 0.098 12.4 0.0 0.15 11.9 0.0 1.3 1 0 0 1 1 1 0 Beta-ketoacyl synthase, C-terminal domain PHP_C PF13263.1 gi|336254614|ref|YP_004597721.1| - 3e-15 55.4 0.9 6.6e-15 54.3 0.6 1.6 1 0 0 1 1 1 1 PHP-associated PHP PF02811.14 gi|336254614|ref|YP_004597721.1| - 1.7e-13 50.7 0.1 9.7e-13 48.2 0.0 1.9 1 1 0 1 1 1 1 PHP domain Peptidase_M50 PF02163.17 gi|336254615|ref|YP_004597722.1| - 2e-11 43.2 19.4 3.6e-10 39.1 13.4 2.3 1 1 0 1 1 1 1 Peptidase family M50 TraB PF01963.12 gi|336254616|ref|YP_004597723.1| - 1.1e-41 143.0 0.1 1.3e-22 80.5 0.0 2.2 2 0 0 2 2 2 2 TraB family RRM_4 PF10598.4 gi|336254616|ref|YP_004597723.1| - 0.1 12.4 1.1 0.18 11.6 0.3 1.8 2 0 0 2 2 2 0 RNA recognition motif of the spliceosomal PrP8 Exo_endo_phos PF03372.18 gi|336254616|ref|YP_004597723.1| - 0.19 11.6 0.0 0.38 10.6 0.0 1.4 1 0 0 1 1 1 0 Endonuclease/Exonuclease/phosphatase family 4HBT PF03061.17 gi|336254617|ref|YP_004597724.1| - 3.5e-15 55.8 0.3 4.6e-15 55.5 0.2 1.2 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_2 PF13279.1 gi|336254617|ref|YP_004597724.1| - 0.0022 18.4 0.1 0.0027 18.1 0.1 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily DUF3203 PF11462.3 gi|336254617|ref|YP_004597724.1| - 0.0077 16.1 0.1 0.05 13.5 0.0 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF3203) Peptidase_S66 PF02016.10 gi|336254618|ref|YP_004597725.1| - 2e-60 204.1 0.0 2.3e-60 203.9 0.0 1.0 1 0 0 1 1 1 1 LD-carboxypeptidase Gly-zipper_Omp PF13488.1 gi|336254619|ref|YP_004597726.1| - 1.6e-06 27.6 12.1 2.2e-06 27.1 8.4 1.3 1 0 0 1 1 1 1 Glycine zipper Rick_17kDa_Anti PF05433.10 gi|336254619|ref|YP_004597726.1| - 1.1e-05 24.9 15.1 1.7e-05 24.4 10.4 1.3 1 0 0 1 1 1 1 Glycine zipper 2TM domain Gly-zipper_YMGG PF13441.1 gi|336254619|ref|YP_004597726.1| - 4.8e-05 22.7 16.6 6.2e-05 22.4 11.5 1.2 1 0 0 1 1 1 1 YMGG-like Gly-zipper Gly-zipper_OmpA PF13436.1 gi|336254619|ref|YP_004597726.1| - 0.0001 21.9 8.8 0.00012 21.7 6.1 1.1 1 0 0 1 1 1 1 Glycine-zipper containing OmpA-like membrane domain DUF456 PF04306.8 gi|336254619|ref|YP_004597726.1| - 0.012 15.6 1.2 0.012 15.6 0.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF456) Bacteriocin_IIc PF10439.4 gi|336254619|ref|YP_004597726.1| - 0.025 14.6 6.7 0.035 14.2 4.7 1.3 1 0 0 1 1 1 0 Bacteriocin class II with double-glycine leader peptide TraT PF05818.7 gi|336254619|ref|YP_004597726.1| - 0.026 13.9 3.7 0.029 13.7 2.5 1.1 1 0 0 1 1 1 0 Enterobacterial TraT complement resistance protein ATP-synt_E PF05680.7 gi|336254619|ref|YP_004597726.1| - 0.046 13.6 1.1 0.048 13.6 0.2 1.5 2 0 0 2 2 2 0 ATP synthase E chain DUF3482 PF11981.3 gi|336254619|ref|YP_004597726.1| - 0.052 12.7 6.9 0.059 12.6 4.8 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF3482) DUF3493 PF11998.3 gi|336254619|ref|YP_004597726.1| - 0.41 10.5 4.4 8.3 6.3 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3493) TrbC PF04956.8 gi|336254619|ref|YP_004597726.1| - 0.45 10.5 3.0 0.57 10.2 2.1 1.1 1 0 0 1 1 1 0 TrbC/VIRB2 family DUF2273 PF10031.4 gi|336254619|ref|YP_004597726.1| - 2.4 7.8 5.9 9.4 5.9 0.3 2.1 2 0 0 2 2 2 0 Small integral membrane protein (DUF2273) Voltage_CLC PF00654.15 gi|336254619|ref|YP_004597726.1| - 6.5 5.6 7.4 8.8 5.2 2.5 1.9 1 1 1 2 2 2 0 Voltage gated chloride channel Hydrolase_6 PF13344.1 gi|336254620|ref|YP_004597727.1| - 5.8e-25 87.1 0.0 2e-24 85.3 0.0 1.9 3 0 0 3 3 3 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|336254620|ref|YP_004597727.1| - 3.2e-18 65.2 0.5 1.2e-17 63.3 0.2 2.1 2 0 0 2 2 2 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|336254620|ref|YP_004597727.1| - 7e-08 33.1 0.3 5e-06 27.0 0.2 2.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|336254620|ref|YP_004597727.1| - 1.5e-06 28.5 0.3 0.0044 17.2 0.0 3.1 2 1 0 2 2 2 2 Haloacid dehalogenase-like hydrolase PGP_phosphatase PF09419.5 gi|336254620|ref|YP_004597727.1| - 0.017 14.5 0.0 0.028 13.7 0.0 1.4 1 0 0 1 1 1 0 Mitochondrial PGP phosphatase Hydrolase_3 PF08282.7 gi|336254620|ref|YP_004597727.1| - 0.033 13.7 0.0 0.083 12.4 0.0 1.6 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase SHOCT PF09851.4 gi|336254621|ref|YP_004597728.1| - 1.5e-08 33.7 0.5 2.4e-08 33.1 0.3 1.4 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.6 gi|336254621|ref|YP_004597728.1| - 0.0014 18.2 8.2 0.015 15.0 5.7 2.2 1 1 0 1 1 1 1 Domain of unknown function (DUF1707) GvpG PF05120.7 gi|336254621|ref|YP_004597728.1| - 0.0092 15.7 1.3 0.0092 15.7 0.9 1.6 2 1 0 2 2 2 1 Gas vesicle protein G Pedibin PF08182.6 gi|336254621|ref|YP_004597728.1| - 0.11 11.9 0.2 0.21 11.1 0.1 1.4 1 0 0 1 1 1 0 Pedibin/Hym-346 family Peptidase_C57 PF03290.8 gi|336254622|ref|YP_004597729.1| - 0.14 10.6 0.0 0.19 10.2 0.0 1.1 1 0 0 1 1 1 0 Vaccinia virus I7 processing peptidase TFIIS_C PF01096.13 gi|336254623|ref|YP_004597730.1| - 0.013 15.1 1.5 0.11 12.1 0.1 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) HypA PF01155.14 gi|336254623|ref|YP_004597730.1| - 0.014 15.0 1.0 0.014 15.0 0.7 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Zn_Tnp_IS1595 PF12760.2 gi|336254623|ref|YP_004597730.1| - 0.015 15.1 1.5 0.4 10.5 0.3 2.1 2 0 0 2 2 2 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|336254623|ref|YP_004597730.1| - 0.019 14.9 6.2 0.13 12.2 4.3 1.9 1 1 0 1 1 1 0 Zinc ribbon domain DZR PF12773.2 gi|336254623|ref|YP_004597730.1| - 0.021 14.6 0.6 0.024 14.4 0.4 1.2 1 0 0 1 1 1 0 Double zinc ribbon UPF0547 PF10571.4 gi|336254623|ref|YP_004597730.1| - 0.029 14.0 5.7 0.24 11.1 0.2 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Ogr_Delta PF04606.7 gi|336254623|ref|YP_004597730.1| - 0.037 13.6 1.3 0.93 9.2 0.1 2.1 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger DnaJ_CXXCXGXG PF00684.14 gi|336254623|ref|YP_004597730.1| - 0.051 13.6 0.2 0.062 13.3 0.2 1.2 1 0 0 1 1 1 0 DnaJ central domain zf-IS66 PF13005.2 gi|336254623|ref|YP_004597730.1| - 0.067 13.1 1.3 3.2 7.8 0.0 2.1 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 DUF1272 PF06906.6 gi|336254623|ref|YP_004597730.1| - 0.076 12.8 0.7 0.095 12.5 0.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) zf-UBR PF02207.15 gi|336254623|ref|YP_004597730.1| - 0.083 12.6 0.5 0.096 12.4 0.4 1.1 1 0 0 1 1 1 0 Putative zinc finger in N-recognin (UBR box) A2L_zn_ribbon PF08792.5 gi|336254623|ref|YP_004597730.1| - 0.099 12.1 4.2 1.7 8.1 2.9 2.1 1 1 0 1 1 1 0 A2L zinc ribbon domain DUF1451 PF07295.6 gi|336254623|ref|YP_004597730.1| - 0.13 12.0 1.2 0.16 11.7 0.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) TF_Zn_Ribbon PF08271.7 gi|336254623|ref|YP_004597730.1| - 0.43 9.9 5.2 1.3 8.4 3.6 1.7 1 1 0 1 1 1 0 TFIIB zinc-binding zf-RING_3 PF14369.1 gi|336254623|ref|YP_004597730.1| - 1.5 8.8 4.9 2.8 8.0 3.4 1.6 1 1 0 1 1 1 0 zinc-finger DUF2387 PF09526.5 gi|336254623|ref|YP_004597730.1| - 4.5 7.2 5.6 1.8 8.5 0.2 2.0 1 1 1 2 2 2 0 Probable metal-binding protein (DUF2387) DNA_RNApol_7kD PF03604.8 gi|336254623|ref|YP_004597730.1| - 4.9 6.7 6.2 1.8 8.1 1.1 1.9 1 1 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit C1_3 PF07649.7 gi|336254623|ref|YP_004597730.1| - 9 6.4 6.8 25 5.0 0.2 2.2 2 0 0 2 2 2 0 C1-like domain zf-Di19 PF05605.7 gi|336254624|ref|YP_004597731.1| - 0.014 15.4 0.1 0.02 15.0 0.1 1.3 1 0 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding Zn-ribbon_8 PF09723.5 gi|336254624|ref|YP_004597731.1| - 0.031 14.2 0.1 0.48 10.4 0.0 2.1 2 0 0 2 2 2 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|336254624|ref|YP_004597731.1| - 0.16 11.7 0.5 0.31 10.8 0.1 1.6 2 0 0 2 2 2 0 Transposase zinc-ribbon domain MFS_1 PF07690.11 gi|336254625|ref|YP_004597732.1| - 3e-39 134.7 67.2 4.1e-36 124.4 34.1 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily LacY_symp PF01306.14 gi|336254625|ref|YP_004597732.1| - 1e-06 27.5 12.6 0.001 17.7 0.2 3.5 2 1 1 3 3 3 3 LacY proton/sugar symporter PEPCK_ATP PF01293.15 gi|336254626|ref|YP_004597733.1| - 4.6e-62 210.0 0.0 7.9e-62 209.3 0.0 1.4 1 1 0 1 1 1 1 Phosphoenolpyruvate carboxykinase CutA1 PF03091.10 gi|336254628|ref|YP_004597735.1| - 1.4e-27 95.3 0.0 1.5e-27 95.2 0.0 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein Ribosomal_L11 PF00298.14 gi|336254629|ref|YP_004597736.1| - 1.1e-22 79.8 0.0 1.6e-22 79.3 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain Ribosomal_L11_N PF03946.9 gi|336254629|ref|YP_004597736.1| - 5.8e-19 67.3 0.1 8.8e-19 66.7 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein L11, N-terminal domain Ribosomal_L1 PF00687.16 gi|336254631|ref|YP_004597738.1| - 2.5e-42 144.7 0.0 3e-42 144.4 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family Ribosomal_L10 PF00466.15 gi|336254632|ref|YP_004597739.1| - 1.2e-23 82.9 0.0 2.2e-23 82.0 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein L10 Ribosomal_60s PF00428.14 gi|336254632|ref|YP_004597739.1| - 0.03 14.6 20.2 0.04 14.2 11.7 2.8 3 0 0 3 3 3 0 60s Acidic ribosomal protein CobT PF06213.7 gi|336254632|ref|YP_004597739.1| - 0.037 13.1 14.2 0.059 12.4 9.8 1.3 1 0 0 1 1 1 0 Cobalamin biosynthesis protein CobT DUF473 PF04322.7 gi|336254632|ref|YP_004597739.1| - 0.12 11.9 0.0 0.21 11.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF473) RNA_pol_3_Rpc31 PF11705.3 gi|336254632|ref|YP_004597739.1| - 9.7 6.0 16.8 16 5.3 11.6 1.3 1 0 0 1 1 1 0 DNA-directed RNA polymerase III subunit Rpc31 Ribosomal_60s PF00428.14 gi|336254633|ref|YP_004597740.1| - 1.4e-15 57.4 14.9 1.7e-15 57.1 10.3 1.1 1 0 0 1 1 1 1 60s Acidic ribosomal protein DUF2067 PF09840.4 gi|336254633|ref|YP_004597740.1| - 0.24 10.8 2.5 10 5.5 0.0 2.1 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2067) NOA36 PF06524.7 gi|336254633|ref|YP_004597740.1| - 1.1 8.3 7.1 1.3 8.2 4.9 1.1 1 0 0 1 1 1 0 NOA36 protein DUF2457 PF10446.4 gi|336254633|ref|YP_004597740.1| - 9.5 4.8 11.5 9.2 4.8 8.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2457) Herpes_US9 PF06072.6 gi|336254634|ref|YP_004597741.1| - 0.0015 18.3 3.8 0.024 14.4 0.2 3.4 3 0 0 3 3 3 1 Alphaherpesvirus tegument protein US9 Trypan_PARP PF05887.6 gi|336254634|ref|YP_004597741.1| - 0.19 11.5 6.5 0.37 10.5 4.5 1.5 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) RskA PF10099.4 gi|336254634|ref|YP_004597741.1| - 5.3 6.7 9.3 3.3 7.3 0.4 2.7 3 0 0 3 3 3 0 Anti-sigma-K factor rskA BCD PF15461.1 gi|336254635|ref|YP_004597742.1| - 9.1e-76 254.6 17.1 1.3e-75 254.2 11.9 1.2 1 0 0 1 1 1 1 Beta-carotene 15,15'-dioxygenase Patatin PF01734.17 gi|336254635|ref|YP_004597742.1| - 0.0013 18.6 1.6 0.0021 18.0 1.1 1.5 1 0 0 1 1 1 1 Patatin-like phospholipase TctA PF01970.11 gi|336254636|ref|YP_004597743.1| - 1.7e-61 207.9 49.3 2.2e-61 207.5 34.1 1.1 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family BtpA PF03437.10 gi|336254637|ref|YP_004597744.1| - 1.8e-85 286.2 4.7 2.1e-85 286.0 3.3 1.0 1 0 0 1 1 1 1 BtpA family TGT PF01702.13 gi|336254637|ref|YP_004597744.1| - 0.0014 17.9 0.1 0.0029 16.9 0.0 1.5 2 0 0 2 2 2 1 Queuine tRNA-ribosyltransferase DUF556 PF04476.8 gi|336254637|ref|YP_004597744.1| - 0.0027 16.9 0.1 0.0027 16.9 0.1 2.6 1 1 0 2 2 2 1 Protein of unknown function (DUF556) Trp_syntA PF00290.15 gi|336254637|ref|YP_004597744.1| - 0.0036 15.8 1.0 0.0056 15.2 0.7 1.3 1 0 0 1 1 1 1 Tryptophan synthase alpha chain PcrB PF01884.12 gi|336254637|ref|YP_004597744.1| - 0.013 14.7 2.0 0.013 14.7 1.4 2.6 3 1 1 4 4 4 0 PcrB family IGPS PF00218.16 gi|336254637|ref|YP_004597744.1| - 0.045 12.8 0.3 0.1 11.6 0.1 1.6 2 0 0 2 2 2 0 Indole-3-glycerol phosphate synthase Asp_Glu_race PF01177.17 gi|336254637|ref|YP_004597744.1| - 0.077 12.8 3.4 0.12 12.2 1.5 2.1 1 1 0 1 1 1 0 Asp/Glu/Hydantoin racemase Oxidored_FMN PF00724.15 gi|336254638|ref|YP_004597745.1| - 6.1e-70 235.8 0.0 8.3e-70 235.4 0.0 1.1 1 0 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family AhpC-TSA PF00578.16 gi|336254639|ref|YP_004597746.1| - 1.3e-17 63.6 0.0 1.7e-17 63.2 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|336254639|ref|YP_004597746.1| - 1.4e-13 50.6 0.0 1.7e-13 50.3 0.0 1.1 1 0 0 1 1 1 1 Redoxin Thioredoxin_2 PF13098.1 gi|336254639|ref|YP_004597746.1| - 3.3e-05 24.0 0.0 4.9e-05 23.5 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.1 gi|336254639|ref|YP_004597746.1| - 0.00027 20.9 0.0 0.00037 20.5 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like TatD_DNase PF01026.16 gi|336254639|ref|YP_004597746.1| - 0.0012 18.0 0.0 0.0016 17.6 0.0 1.1 1 0 0 1 1 1 1 TatD related DNase GSHPx PF00255.14 gi|336254639|ref|YP_004597746.1| - 0.038 13.3 0.0 0.055 12.8 0.0 1.2 1 0 0 1 1 1 0 Glutathione peroxidase T4_deiodinase PF00837.12 gi|336254639|ref|YP_004597746.1| - 0.12 11.3 0.0 0.15 10.9 0.0 1.2 1 0 0 1 1 1 0 Iodothyronine deiodinase Thioredoxin PF00085.15 gi|336254639|ref|YP_004597746.1| - 0.14 11.8 0.0 0.75 9.5 0.0 1.9 1 1 1 2 2 2 0 Thioredoxin YmgB PF10798.3 gi|336254640|ref|YP_004597747.1| - 0.028 14.1 0.2 0.22 11.3 0.0 2.2 2 0 0 2 2 2 0 Biofilm development protein YmgB/AriR CENP-T PF15511.1 gi|336254640|ref|YP_004597747.1| - 0.41 9.8 17.1 0.46 9.6 11.9 1.0 1 0 0 1 1 1 0 Centromere kinetochore component CENP-T CobT PF06213.7 gi|336254640|ref|YP_004597747.1| - 2.5 7.1 20.3 3.3 6.7 14.1 1.2 1 0 0 1 1 1 0 Cobalamin biosynthesis protein CobT DUF1510 PF07423.6 gi|336254640|ref|YP_004597747.1| - 4.8 6.4 11.8 6.4 6.0 8.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1510) PPP4R2 PF09184.6 gi|336254640|ref|YP_004597747.1| - 6.7 6.1 14.5 9.2 5.7 10.1 1.2 1 0 0 1 1 1 0 PPP4R2 AsnC_trans_reg PF01037.16 gi|336254641|ref|YP_004597748.1| - 7.9e-13 47.9 0.6 1.3e-12 47.1 0.1 1.6 2 0 0 2 2 2 1 AsnC family HTH_24 PF13412.1 gi|336254641|ref|YP_004597748.1| - 1.3e-05 24.4 0.1 3.9e-05 22.9 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|336254641|ref|YP_004597748.1| - 7.6e-05 22.1 0.7 0.00019 20.8 0.2 1.9 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_27 PF13463.1 gi|336254641|ref|YP_004597748.1| - 0.00012 22.2 0.0 0.017 15.3 0.1 2.7 2 1 0 2 2 2 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|336254641|ref|YP_004597748.1| - 0.0012 18.5 1.0 0.0016 18.1 0.1 1.7 2 0 0 2 2 2 1 MarR family FeoC PF09012.5 gi|336254641|ref|YP_004597748.1| - 0.0033 17.0 0.0 0.0057 16.3 0.0 1.3 1 0 0 1 1 1 1 FeoC like transcriptional regulator TrmB PF01978.14 gi|336254641|ref|YP_004597748.1| - 0.012 15.3 0.3 0.022 14.4 0.2 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB She9_MDM33 PF05546.6 gi|336254641|ref|YP_004597748.1| - 0.03 13.8 0.3 0.082 12.4 0.1 1.8 2 1 0 2 2 2 0 She9 / Mdm33 family Rrf2 PF02082.15 gi|336254641|ref|YP_004597748.1| - 0.055 13.5 0.0 0.12 12.4 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator DUF2250 PF10007.4 gi|336254641|ref|YP_004597748.1| - 0.061 13.2 0.0 0.1 12.5 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) TFIIE_alpha PF02002.12 gi|336254641|ref|YP_004597748.1| - 0.08 12.4 0.5 0.13 11.7 0.3 1.4 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_Crp_2 PF13545.1 gi|336254641|ref|YP_004597748.1| - 0.13 12.1 0.0 0.26 11.0 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Aminotran_1_2 PF00155.16 gi|336254642|ref|YP_004597749.1| - 6.7e-69 232.5 0.0 7.6e-69 232.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|336254642|ref|YP_004597749.1| - 1.9e-09 37.1 0.0 3.5e-09 36.2 0.0 1.4 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.14 gi|336254642|ref|YP_004597749.1| - 2.7e-05 23.0 0.0 4.5e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|336254642|ref|YP_004597749.1| - 0.0082 15.2 0.2 0.02 13.9 0.0 1.7 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family OKR_DC_1 PF01276.15 gi|336254642|ref|YP_004597749.1| - 0.018 13.6 0.0 0.026 13.0 0.0 1.1 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain Cys_Met_Meta_PP PF01053.15 gi|336254642|ref|YP_004597749.1| - 0.11 10.8 0.0 0.18 10.0 0.0 1.3 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme SCP2_2 PF13530.1 gi|336254643|ref|YP_004597750.1| - 1.6e-56 191.1 0.9 2.1e-56 190.7 0.6 1.1 1 0 0 1 1 1 1 Sterol carrier protein domain Acetyltransf_9 PF13527.1 gi|336254643|ref|YP_004597750.1| - 5.1e-22 78.0 0.1 1.2e-21 76.8 0.1 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|336254643|ref|YP_004597750.1| - 4.3e-06 26.8 0.0 3e-05 24.1 0.0 2.1 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|336254643|ref|YP_004597750.1| - 0.0011 19.0 0.0 0.0047 16.9 0.0 2.0 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family DJ-1_PfpI PF01965.19 gi|336254644|ref|YP_004597751.1| - 1.2e-40 138.3 0.1 1.5e-40 138.0 0.1 1.1 1 0 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|336254644|ref|YP_004597751.1| - 2.3e-09 36.7 0.0 2.9e-09 36.3 0.0 1.2 1 0 0 1 1 1 1 Putative amidotransferase GATase_3 PF07685.9 gi|336254644|ref|YP_004597751.1| - 0.0076 15.8 0.0 0.012 15.2 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain PAS_4 PF08448.5 gi|336254645|ref|YP_004597752.1| - 2.4e-25 88.6 9.5 1.7e-14 53.8 0.2 3.2 3 0 0 3 3 3 2 PAS fold PAS_9 PF13426.1 gi|336254645|ref|YP_004597752.1| - 3.6e-21 75.4 0.8 1.4e-09 38.2 0.1 3.5 3 0 0 3 3 3 2 PAS domain PAS PF00989.19 gi|336254645|ref|YP_004597752.1| - 9.5e-18 64.0 0.2 3.1e-09 36.6 0.1 2.7 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.1 gi|336254645|ref|YP_004597752.1| - 1.3e-12 47.0 0.2 4.1e-07 29.6 0.1 2.9 2 0 0 2 2 2 2 PAS domain GAF_3 PF13492.1 gi|336254645|ref|YP_004597752.1| - 2.8e-10 40.3 0.0 6.7e-10 39.1 0.0 1.7 1 0 0 1 1 1 1 GAF domain GAF_2 PF13185.1 gi|336254645|ref|YP_004597752.1| - 1.1e-09 39.0 0.4 3e-09 37.5 0.3 1.8 1 0 0 1 1 1 1 GAF domain HATPase_c PF02518.21 gi|336254645|ref|YP_004597752.1| - 0.0001 22.0 0.0 0.00022 20.8 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|336254645|ref|YP_004597752.1| - 0.0079 15.9 2.6 0.19 11.5 1.8 2.9 1 1 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_7 PF12860.2 gi|336254645|ref|YP_004597752.1| - 0.012 15.5 3.8 0.31 11.0 0.1 3.8 3 1 0 3 3 3 0 PAS fold GAF PF01590.21 gi|336254645|ref|YP_004597752.1| - 0.018 15.1 0.0 0.061 13.4 0.0 2.0 1 0 0 1 1 1 0 GAF domain PAS_10 PF13596.1 gi|336254645|ref|YP_004597752.1| - 0.022 15.0 0.0 1.1 9.5 0.0 3.2 3 0 0 3 3 3 0 PAS domain HEXIM PF15313.1 gi|336254645|ref|YP_004597752.1| - 0.061 13.4 0.3 0.24 11.5 0.0 2.1 2 0 0 2 2 2 0 Hexamethylene bis-acetamide-inducible protein HalX PF08663.5 gi|336254646|ref|YP_004597753.1| - 7.8e-13 48.2 7.1 7.8e-13 48.2 4.9 1.9 2 0 0 2 2 2 1 HalX domain Response_reg PF00072.19 gi|336254646|ref|YP_004597753.1| - 0.001 19.0 0.1 0.002 18.1 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain AIRS_C PF02769.17 gi|336254647|ref|YP_004597754.1| - 1.4e-40 138.7 8.7 1.2e-29 103.2 0.9 3.0 3 0 0 3 3 3 2 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|336254647|ref|YP_004597754.1| - 8.6e-40 134.8 12.8 8.9e-25 86.7 0.2 3.3 3 0 0 3 3 3 2 AIR synthase related protein, N-terminal domain BofA PF07441.6 gi|336254648|ref|YP_004597755.1| - 0.015 15.2 0.7 0.015 15.2 0.5 2.3 1 1 1 2 2 2 0 SigmaK-factor processing regulatory protein BofA MFS_1 PF07690.11 gi|336254649|ref|YP_004597756.1| - 1.1e-14 53.9 54.8 1.4e-08 33.8 20.5 2.3 1 1 1 2 2 2 2 Major Facilitator Superfamily HTH_20 PF12840.2 gi|336254650|ref|YP_004597757.1| - 3.5e-12 45.9 0.6 6.2e-12 45.1 0.4 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|336254650|ref|YP_004597757.1| - 3.7e-09 36.0 0.2 8.2e-09 34.9 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|336254650|ref|YP_004597757.1| - 0.00093 18.8 0.0 0.0019 17.8 0.0 1.6 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB GntR PF00392.16 gi|336254650|ref|YP_004597757.1| - 0.0011 18.3 0.1 0.0024 17.2 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family MarR_2 PF12802.2 gi|336254650|ref|YP_004597757.1| - 0.023 14.3 0.4 0.079 12.6 0.3 2.0 1 1 0 1 1 1 0 MarR family RP-C PF03428.8 gi|336254650|ref|YP_004597757.1| - 0.024 14.1 1.1 0.096 12.1 0.6 2.0 1 1 0 1 1 1 0 Replication protein C N-terminal domain DUF4423 PF14394.1 gi|336254650|ref|YP_004597757.1| - 0.057 12.9 0.0 0.11 11.9 0.0 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4423) LMWPc PF01451.16 gi|336254651|ref|YP_004597758.1| - 2.8e-32 111.9 0.1 3.2e-32 111.7 0.0 1.0 1 0 0 1 1 1 1 Low molecular weight phosphotyrosine protein phosphatase DUF2526 PF10735.4 gi|336254651|ref|YP_004597758.1| - 0.18 11.8 0.2 0.18 11.8 0.2 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF2526) PHP_C PF13263.1 gi|336254652|ref|YP_004597759.1| - 1.8e-22 78.5 0.8 3.8e-22 77.5 0.6 1.6 1 0 0 1 1 1 1 PHP-associated PHP PF02811.14 gi|336254652|ref|YP_004597759.1| - 5.7e-16 58.8 0.0 1.5e-15 57.4 0.0 1.8 1 1 0 1 1 1 1 PHP domain Glyco_tranf_2_4 PF13704.1 gi|336254652|ref|YP_004597759.1| - 0.15 12.4 0.1 0.78 10.0 0.1 2.3 1 1 0 1 1 1 0 Glycosyl transferase family 2 Asn_synthase PF00733.16 gi|336254653|ref|YP_004597760.1| - 1.4e-43 149.2 0.9 2.5e-43 148.4 0.6 1.3 1 0 0 1 1 1 1 Asparagine synthase NAD_synthase PF02540.12 gi|336254653|ref|YP_004597760.1| - 0.011 14.6 0.0 0.02 13.7 0.0 1.4 1 0 0 1 1 1 0 NAD synthase tRNA_Me_trans PF03054.11 gi|336254653|ref|YP_004597760.1| - 0.027 13.0 0.0 0.037 12.5 0.0 1.2 1 0 0 1 1 1 0 tRNA methyl transferase Cupin_2 PF07883.6 gi|336254654|ref|YP_004597761.1| - 4.3e-10 38.9 2.3 6.4e-10 38.3 1.6 1.2 1 0 0 1 1 1 1 Cupin domain DUF1637 PF07847.7 gi|336254654|ref|YP_004597761.1| - 0.0078 15.5 0.0 0.0078 15.5 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1637) Cupin_3 PF05899.7 gi|336254654|ref|YP_004597761.1| - 0.049 13.0 0.1 0.071 12.5 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF861) CDO_I PF05995.7 gi|336254654|ref|YP_004597761.1| - 0.098 11.8 0.1 0.11 11.6 0.1 1.2 1 0 0 1 1 1 0 Cysteine dioxygenase type I ParA PF10609.4 gi|336254655|ref|YP_004597762.1| - 5.4e-35 119.1 0.1 9e-35 118.4 0.0 1.3 1 0 0 1 1 1 1 ParA/MinD ATPase like CbiA PF01656.18 gi|336254655|ref|YP_004597762.1| - 1.6e-20 73.3 0.0 2.4e-20 72.7 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|336254655|ref|YP_004597762.1| - 1.5e-08 34.7 0.0 2e-06 27.8 0.0 2.2 2 0 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.10 gi|336254655|ref|YP_004597762.1| - 6.7e-07 28.6 2.8 0.00021 20.4 0.5 3.0 2 1 1 3 3 3 1 Anion-transporting ATPase DUF59 PF01883.14 gi|336254655|ref|YP_004597762.1| - 1.1e-06 28.5 0.4 3.7e-06 26.8 0.0 2.0 2 0 0 2 2 2 1 Domain of unknown function DUF59 MipZ PF09140.6 gi|336254655|ref|YP_004597762.1| - 5.3e-05 22.4 0.3 0.00011 21.3 0.2 1.6 1 1 0 1 1 1 1 ATPase MipZ VirC1 PF07015.6 gi|336254655|ref|YP_004597762.1| - 0.0013 17.8 0.0 0.0025 16.9 0.0 1.4 1 0 0 1 1 1 1 VirC1 protein AAA_26 PF13500.1 gi|336254655|ref|YP_004597762.1| - 0.0023 17.5 0.1 2.3 7.7 0.2 2.3 2 0 0 2 2 2 2 AAA domain SRP54 PF00448.17 gi|336254655|ref|YP_004597762.1| - 0.015 14.7 0.2 0.025 14.0 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_25 PF13481.1 gi|336254655|ref|YP_004597762.1| - 0.036 13.4 0.0 0.068 12.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|336254655|ref|YP_004597762.1| - 0.046 13.4 1.7 0.67 9.7 0.4 2.5 2 0 0 2 2 2 0 Part of AAA domain Fer4_NifH PF00142.13 gi|336254655|ref|YP_004597762.1| - 0.071 12.2 0.2 0.15 11.2 0.1 1.5 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family APS_kinase PF01583.15 gi|336254655|ref|YP_004597762.1| - 0.072 12.7 0.0 0.13 11.8 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase YhjQ PF06564.7 gi|336254655|ref|YP_004597762.1| - 0.081 12.2 0.2 1 8.6 0.2 2.0 2 0 0 2 2 2 0 YhjQ protein Ubie_methyltran PF01209.13 gi|336254655|ref|YP_004597762.1| - 0.13 11.3 0.0 0.22 10.5 0.0 1.3 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family NB-ARC PF00931.17 gi|336254655|ref|YP_004597762.1| - 0.23 10.2 0.2 0.36 9.6 0.1 1.2 1 0 0 1 1 1 0 NB-ARC domain Bax1-I PF01027.15 gi|336254656|ref|YP_004597763.1| - 0.29 10.6 7.9 0.34 10.4 5.5 1.1 1 0 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 DUF3292 PF11696.3 gi|336254656|ref|YP_004597763.1| - 0.62 7.8 3.0 0.99 7.1 1.7 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF3292) Lig_chan PF00060.21 gi|336254656|ref|YP_004597763.1| - 2.5 7.8 5.5 7.3 6.2 0.1 2.1 2 0 0 2 2 2 0 Ligand-gated ion channel PgaD PF13994.1 gi|336254656|ref|YP_004597763.1| - 2.6 7.5 9.6 54 3.2 6.8 2.0 1 1 0 1 1 1 0 PgaD-like protein DUF2592 PF10766.4 gi|336254656|ref|YP_004597763.1| - 6.7 6.1 9.8 0.27 10.5 2.4 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2592) RCR PF12273.3 gi|336254657|ref|YP_004597764.1| - 0.29 11.6 0.2 0.29 11.6 0.2 1.5 2 0 0 2 2 2 0 Chitin synthesis regulation, resistance to Congo red Oleosin PF01277.12 gi|336254657|ref|YP_004597764.1| - 0.54 9.8 2.6 0.94 9.0 1.5 1.7 1 1 0 1 1 1 0 Oleosin UPF0197 PF05251.7 gi|336254657|ref|YP_004597764.1| - 1.9 8.8 6.3 4.5 7.6 4.3 1.6 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0197) Lig_chan PF00060.21 gi|336254657|ref|YP_004597764.1| - 1.9 8.1 5.4 2.7 7.7 0.1 2.1 2 0 0 2 2 2 0 Ligand-gated ion channel PgaD PF13994.1 gi|336254657|ref|YP_004597764.1| - 2.8 7.4 10.5 42 3.5 1.5 2.1 1 1 1 2 2 2 0 PgaD-like protein NrfD PF03916.9 gi|336254658|ref|YP_004597765.1| - 2.9e-19 69.6 17.7 2.9e-19 69.6 12.3 1.7 1 1 1 2 2 2 2 Polysulphide reductase, NrfD Fer4_11 PF13247.1 gi|336254659|ref|YP_004597766.1| - 7.4e-19 67.4 16.4 1.8e-15 56.6 4.1 3.2 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|336254659|ref|YP_004597766.1| - 2.8e-16 59.6 18.9 4e-05 23.8 2.3 4.5 4 1 0 4 4 4 4 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|336254659|ref|YP_004597766.1| - 1.3e-10 41.3 24.9 5.4e-08 32.9 5.5 3.7 2 2 1 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|336254659|ref|YP_004597766.1| - 5.6e-09 35.6 26.1 2.6e-05 23.9 5.0 3.6 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|336254659|ref|YP_004597766.1| - 3.1e-08 33.0 11.5 3.2e-05 23.5 1.4 4.9 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4 PF00037.22 gi|336254659|ref|YP_004597766.1| - 1.5e-07 30.6 34.1 0.00011 21.6 2.4 5.0 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_6 PF12837.2 gi|336254659|ref|YP_004597766.1| - 9.2e-07 28.4 36.4 0.00052 19.7 1.4 4.7 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_8 PF13183.1 gi|336254659|ref|YP_004597766.1| - 1e-05 25.4 22.3 0.012 15.5 6.2 3.6 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|336254659|ref|YP_004597766.1| - 2e-05 24.8 21.0 0.048 14.0 3.8 3.8 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|336254659|ref|YP_004597766.1| - 0.002 18.3 3.0 0.002 18.3 2.1 4.5 4 1 0 4 4 4 2 4Fe-4S binding domain Fer4_3 PF12798.2 gi|336254659|ref|YP_004597766.1| - 0.0038 17.6 40.6 0.35 11.5 3.8 4.4 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_16 PF13484.1 gi|336254659|ref|YP_004597766.1| - 0.0073 17.0 24.6 0.79 10.5 1.1 4.7 3 1 2 5 5 5 3 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|336254659|ref|YP_004597766.1| - 0.0077 16.0 23.9 0.15 11.9 6.3 3.6 3 0 0 3 3 3 2 4Fe-4S dicluster domain P4Ha_N PF08336.6 gi|336254659|ref|YP_004597766.1| - 0.013 15.3 0.1 0.032 14.0 0.1 1.6 1 0 0 1 1 1 0 Prolyl 4-Hydroxylase alpha-subunit, N-terminal region Fer4_18 PF13746.1 gi|336254659|ref|YP_004597766.1| - 0.098 13.0 24.5 0.28 11.6 2.2 4.6 3 1 1 4 4 4 0 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|336254659|ref|YP_004597766.1| - 1.9 9.0 22.1 0.16 12.5 0.4 4.9 5 0 0 5 5 5 0 4Fe-4S single cluster domain Cupin_2 PF07883.6 gi|336254660|ref|YP_004597767.1| - 1.4e-08 34.0 0.2 1.9e-08 33.6 0.1 1.3 1 0 0 1 1 1 1 Cupin domain Cupin_3 PF05899.7 gi|336254660|ref|YP_004597767.1| - 0.014 14.7 0.0 0.024 14.0 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF861) DUF2917 PF11142.3 gi|336254660|ref|YP_004597767.1| - 0.036 13.2 0.1 0.065 12.4 0.0 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2917) CENP-C_C PF11699.3 gi|336254660|ref|YP_004597767.1| - 0.046 13.7 0.0 0.064 13.2 0.0 1.2 1 0 0 1 1 1 0 Mif2/CENP-C like Pirin_C PF05726.8 gi|336254660|ref|YP_004597767.1| - 0.1 12.6 0.0 0.14 12.2 0.0 1.2 1 0 0 1 1 1 0 Pirin C-terminal cupin domain HTH_10 PF04967.7 gi|336254661|ref|YP_004597768.1| - 2.4e-19 68.6 0.3 5.5e-19 67.4 0.0 1.7 2 0 0 2 2 2 1 HTH DNA binding domain HTH_24 PF13412.1 gi|336254661|ref|YP_004597768.1| - 0.0023 17.3 0.0 0.0057 16.0 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|336254661|ref|YP_004597768.1| - 0.0032 17.0 0.5 0.023 14.2 0.0 2.3 2 0 0 2 2 2 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|336254661|ref|YP_004597768.1| - 0.0038 16.8 0.1 0.014 14.9 0.0 2.0 2 0 0 2 2 2 1 MarR family PuR_N PF09182.5 gi|336254661|ref|YP_004597768.1| - 0.012 15.1 0.0 0.027 14.0 0.0 1.6 1 0 0 1 1 1 0 Bacterial purine repressor, N-terminal HTH_Tnp_Tc3_2 PF01498.13 gi|336254661|ref|YP_004597768.1| - 0.013 15.5 0.1 17 5.5 0.0 3.5 4 0 0 4 4 4 0 Transposase Phage_CI_repr PF07022.8 gi|336254661|ref|YP_004597768.1| - 0.018 15.1 0.0 0.04 13.9 0.0 1.6 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain Fe_dep_repress PF01325.14 gi|336254661|ref|YP_004597768.1| - 0.022 14.6 0.0 0.051 13.5 0.0 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain ALS_ss_C PF10369.4 gi|336254661|ref|YP_004597768.1| - 0.034 13.8 0.0 0.077 12.7 0.0 1.5 1 0 0 1 1 1 0 Small subunit of acetolactate synthase HTH_20 PF12840.2 gi|336254661|ref|YP_004597768.1| - 0.034 13.9 0.6 0.071 12.9 0.1 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain UPF0122 PF04297.9 gi|336254661|ref|YP_004597768.1| - 0.048 13.6 0.0 0.095 12.7 0.0 1.5 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like MarR PF01047.17 gi|336254661|ref|YP_004597768.1| - 0.073 12.7 0.0 0.18 11.5 0.0 1.6 1 0 0 1 1 1 0 MarR family HTH_AsnC-type PF13404.1 gi|336254661|ref|YP_004597768.1| - 0.1 12.1 0.3 0.44 10.1 0.0 2.1 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain DUF2249 PF10006.4 gi|336254662|ref|YP_004597769.1| - 3.1e-19 68.3 0.1 3.5e-19 68.1 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) TusA PF01206.12 gi|336254662|ref|YP_004597769.1| - 0.00061 19.3 0.0 0.00094 18.7 0.0 1.4 1 1 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.4 gi|336254663|ref|YP_004597770.1| - 2.6e-25 87.8 0.9 2.8e-25 87.6 0.6 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) DUF2249 PF10006.4 gi|336254664|ref|YP_004597771.1| - 1.2e-14 53.6 0.3 1.4e-14 53.4 0.2 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) TusA PF01206.12 gi|336254664|ref|YP_004597771.1| - 0.0026 17.3 0.0 0.0037 16.8 0.0 1.3 1 0 0 1 1 1 1 Sulfurtransferase TusA Abhydrolase_6 PF12697.2 gi|336254665|ref|YP_004597772.1| - 2.5e-30 106.0 9.5 3.4e-30 105.6 6.6 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|336254665|ref|YP_004597772.1| - 3.7e-19 69.2 0.0 4.3e-18 65.7 0.0 2.0 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|336254665|ref|YP_004597772.1| - 1.5e-15 57.2 0.0 2.5e-15 56.4 0.0 1.4 1 1 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.3 gi|336254665|ref|YP_004597772.1| - 0.0002 21.1 0.0 0.00056 19.7 0.0 1.8 2 0 0 2 2 2 1 Putative lysophospholipase DLH PF01738.13 gi|336254665|ref|YP_004597772.1| - 0.00032 20.0 0.0 0.072 12.3 0.0 2.6 2 1 0 2 2 2 2 Dienelactone hydrolase family PGAP1 PF07819.8 gi|336254665|ref|YP_004597772.1| - 0.12 11.9 0.0 0.18 11.3 0.0 1.2 1 0 0 1 1 1 0 PGAP1-like protein Cu-oxidase_3 PF07732.10 gi|336254666|ref|YP_004597773.1| - 3.9e-09 36.2 0.0 1.2e-08 34.7 0.0 1.8 2 0 0 2 2 2 1 Multicopper oxidase Cu-oxidase_2 PF07731.9 gi|336254666|ref|YP_004597773.1| - 5.2e-06 26.0 0.0 1.2e-05 24.7 0.0 1.9 1 1 0 1 1 1 1 Multicopper oxidase Copper-bind PF00127.15 gi|336254666|ref|YP_004597773.1| - 0.013 15.7 0.2 0.044 14.0 0.0 2.0 2 0 0 2 2 2 0 Copper binding proteins, plastocyanin/azurin family TAT_signal PF10518.4 gi|336254666|ref|YP_004597773.1| - 0.016 15.1 0.9 0.016 15.1 0.6 2.0 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence Cupredoxin_1 PF13473.1 gi|336254666|ref|YP_004597773.1| - 0.087 12.7 0.0 0.16 11.8 0.0 1.5 1 0 0 1 1 1 0 Cupredoxin-like domain zf-FCS PF06467.9 gi|336254667|ref|YP_004597774.1| - 0.092 12.3 1.6 0.21 11.2 0.1 1.9 2 0 0 2 2 2 0 MYM-type Zinc finger with FCS sequence motif DUF3330 PF11809.3 gi|336254667|ref|YP_004597774.1| - 0.12 12.3 0.7 0.15 11.9 0.5 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3330) TFIIB PF00382.14 gi|336254668|ref|YP_004597775.1| - 6.8e-42 141.1 0.0 3e-20 71.7 0.0 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|336254668|ref|YP_004597775.1| - 1.1e-15 56.5 2.1 4.1e-15 54.8 1.7 1.8 2 0 0 2 2 2 1 TFIIB zinc-binding DZR PF12773.2 gi|336254668|ref|YP_004597775.1| - 0.013 15.3 0.7 0.022 14.5 0.5 1.3 1 0 0 1 1 1 0 Double zinc ribbon OrfB_Zn_ribbon PF07282.6 gi|336254668|ref|YP_004597775.1| - 0.022 14.3 1.9 0.036 13.7 0.9 1.7 2 0 0 2 2 2 0 Putative transposase DNA-binding domain HTH_24 PF13412.1 gi|336254668|ref|YP_004597775.1| - 0.081 12.3 0.1 0.15 11.4 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Sigma70_r4 PF04545.11 gi|336254668|ref|YP_004597775.1| - 0.11 11.7 6.0 0.23 10.8 0.0 3.8 4 0 0 4 4 4 0 Sigma-70, region 4 zf-C4_Topoisom PF01396.14 gi|336254668|ref|YP_004597775.1| - 0.23 10.9 0.1 0.23 10.9 0.1 1.7 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger YhfH PF14149.1 gi|336254668|ref|YP_004597775.1| - 0.65 9.8 2.7 1.3 8.8 1.9 1.5 1 0 0 1 1 1 0 YhfH-like protein Zn-ribbon_8 PF09723.5 gi|336254668|ref|YP_004597775.1| - 5.5 7.0 6.0 7 6.7 0.5 2.3 1 1 1 2 2 2 0 Zinc ribbon domain Glu-tRNAGln PF02686.10 gi|336254669|ref|YP_004597776.1| - 1.7e-18 66.1 2.1 3.3e-18 65.2 1.5 1.5 1 0 0 1 1 1 1 Glu-tRNAGln amidotransferase C subunit Ferritin PF00210.19 gi|336254669|ref|YP_004597776.1| - 0.15 11.8 0.5 0.22 11.2 0.3 1.3 1 1 0 1 1 1 0 Ferritin-like domain Amidase PF01425.16 gi|336254670|ref|YP_004597777.1| - 5.8e-143 476.9 0.7 6.9e-143 476.6 0.5 1.0 1 0 0 1 1 1 1 Amidase DUF2398 PF09661.5 gi|336254671|ref|YP_004597778.1| - 0.039 12.6 0.3 1.1 7.9 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2398) MarR PF01047.17 gi|336254672|ref|YP_004597779.1| - 5.8e-05 22.7 0.0 8.1e-05 22.2 0.0 1.2 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|336254672|ref|YP_004597779.1| - 0.00014 21.4 0.0 0.00025 20.6 0.0 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|336254672|ref|YP_004597779.1| - 0.00025 20.6 0.0 0.00034 20.2 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB B-block_TFIIIC PF04182.7 gi|336254672|ref|YP_004597779.1| - 0.0015 18.2 0.0 0.0024 17.7 0.0 1.2 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_27 PF13463.1 gi|336254672|ref|YP_004597779.1| - 0.023 14.9 0.0 0.032 14.5 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain NRDE PF05742.7 gi|336254673|ref|YP_004597780.1| - 3.6e-25 88.7 0.0 3.1e-24 85.7 0.0 1.9 1 1 0 1 1 1 1 NRDE protein AMP-binding PF00501.23 gi|336254674|ref|YP_004597781.1| - 9.9e-89 297.5 0.2 1.2e-88 297.3 0.1 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|336254674|ref|YP_004597781.1| - 7e-15 55.7 0.6 1.7e-14 54.5 0.4 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain MR_MLE PF01188.16 gi|336254675|ref|YP_004597782.1| - 2.5e-14 53.5 3.6 7.7e-14 51.9 2.5 1.9 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MR_MLE_C PF13378.1 gi|336254675|ref|YP_004597782.1| - 6.2e-11 42.2 2.8 6.2e-11 42.2 1.9 2.4 3 0 0 3 3 3 1 Enolase C-terminal domain-like MR_MLE_N PF02746.11 gi|336254675|ref|YP_004597782.1| - 9.7e-08 32.0 0.0 8.9e-07 28.9 0.0 2.4 1 1 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain TPR_16 PF13432.1 gi|336254675|ref|YP_004597782.1| - 0.31 11.7 13.2 2 9.1 1.4 3.8 4 0 0 4 4 4 0 Tetratricopeptide repeat DUF4398 PF14346.1 gi|336254675|ref|YP_004597782.1| - 1.2 9.2 6.1 3 7.9 0.8 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF4398) UbiA PF01040.13 gi|336254676|ref|YP_004597783.1| - 5.5e-42 143.7 20.4 7.1e-42 143.4 14.2 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF4131 PF13567.1 gi|336254676|ref|YP_004597783.1| - 0.0058 16.0 1.0 0.0058 16.0 0.7 2.7 1 1 1 3 3 3 1 Domain of unknown function (DUF4131) Iron_transport PF10634.4 gi|336254677|ref|YP_004597784.1| - 0.0027 17.5 0.0 0.01 15.7 0.0 1.9 2 0 0 2 2 2 1 Fe2+ transport protein TAT_signal PF10518.4 gi|336254677|ref|YP_004597784.1| - 0.3 11.1 1.9 0.6 10.2 1.3 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence ECH PF00378.15 gi|336254679|ref|YP_004597786.1| - 5.3e-46 156.7 0.0 6.2e-46 156.5 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family Beta_helix PF13229.1 gi|336254680|ref|YP_004597787.1| - 1.2e-18 67.3 4.1 1.2e-18 67.3 2.9 2.6 2 1 1 3 3 3 2 Right handed beta helix region TAT_signal PF10518.4 gi|336254680|ref|YP_004597787.1| - 2.8 8.1 9.6 0.16 12.0 2.4 2.3 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence EamA PF00892.15 gi|336254682|ref|YP_004597789.1| - 1.1e-22 80.4 17.1 3.1e-11 43.4 5.1 2.2 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|336254682|ref|YP_004597789.1| - 0.0076 16.4 5.3 0.0076 16.4 3.7 4.1 2 1 2 4 4 4 3 Multidrug resistance efflux transporter UPF0546 PF10639.4 gi|336254682|ref|YP_004597789.1| - 0.076 12.8 0.6 0.076 12.8 0.4 3.4 3 1 1 4 4 4 0 Uncharacterised protein family UPF0546 TPP_enzyme_N PF02776.13 gi|336254683|ref|YP_004597790.1| - 7.4e-32 110.1 0.1 4.6e-31 107.5 0.0 2.2 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|336254683|ref|YP_004597790.1| - 4.5e-09 36.0 0.0 1e-08 34.9 0.0 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|336254683|ref|YP_004597790.1| - 3e-06 27.0 0.0 7.8e-06 25.6 0.0 1.7 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain DUF3359 PF11839.3 gi|336254683|ref|YP_004597790.1| - 0.34 11.2 3.4 1.7 9.0 2.3 2.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3359) Chorismate_bind PF00425.13 gi|336254684|ref|YP_004597791.1| - 1.9e-75 253.5 0.0 2.7e-75 253.0 0.0 1.2 1 0 0 1 1 1 1 chorismate binding enzyme Oxidored_molyb PF00174.14 gi|336254685|ref|YP_004597792.1| - 2e-44 150.9 0.0 2.5e-44 150.6 0.0 1.0 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain IclR PF01614.13 gi|336254687|ref|YP_004597794.1| - 0.034 13.8 0.0 0.044 13.4 0.0 1.1 1 0 0 1 1 1 0 Bacterial transcriptional regulator PDGLE PF13190.1 gi|336254688|ref|YP_004597795.1| - 0.033 13.8 0.1 0.037 13.7 0.1 1.2 1 0 0 1 1 1 0 PDGLE domain UCR_Fe-S_N PF10399.4 gi|336254690|ref|YP_004597797.1| - 0.062 12.4 0.2 0.062 12.4 0.1 1.9 2 0 0 2 2 2 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal TAT_signal PF10518.4 gi|336254690|ref|YP_004597797.1| - 0.08 12.9 4.4 0.22 11.6 3.1 1.8 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence His_biosynth PF00977.16 gi|336254691|ref|YP_004597798.1| - 4e-79 265.1 0.1 4.5e-79 264.9 0.1 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.12 gi|336254691|ref|YP_004597798.1| - 1.8e-07 30.3 0.0 1.4e-06 27.3 0.0 1.9 2 0 0 2 2 2 1 Dihydrouridine synthase (Dus) NMO PF03060.10 gi|336254691|ref|YP_004597798.1| - 2.8e-05 23.4 0.3 0.0008 18.6 0.0 2.1 2 0 0 2 2 2 1 Nitronate monooxygenase PcrB PF01884.12 gi|336254691|ref|YP_004597798.1| - 3.1e-05 23.3 0.1 6.6e-05 22.2 0.1 1.6 1 0 0 1 1 1 1 PcrB family ThiG PF05690.9 gi|336254691|ref|YP_004597798.1| - 0.0003 19.9 0.1 0.0089 15.1 0.0 2.1 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG DHO_dh PF01180.16 gi|336254691|ref|YP_004597798.1| - 0.00043 19.3 0.1 0.0011 18.0 0.0 1.6 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase G3P_antiterm PF04309.7 gi|336254691|ref|YP_004597798.1| - 0.0068 15.4 0.0 0.011 14.7 0.0 1.3 1 0 0 1 1 1 1 Glycerol-3-phosphate responsive antiterminator TMP-TENI PF02581.12 gi|336254691|ref|YP_004597798.1| - 0.018 14.1 0.1 0.16 11.0 0.0 2.1 2 0 0 2 2 2 0 Thiamine monophosphate synthase/TENI IMPDH PF00478.20 gi|336254691|ref|YP_004597798.1| - 0.024 13.5 0.0 0.038 12.8 0.0 1.2 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain Glu_synthase PF01645.12 gi|336254691|ref|YP_004597798.1| - 0.031 13.1 0.1 0.048 12.5 0.0 1.2 1 0 0 1 1 1 0 Conserved region in glutamate synthase FMN_dh PF01070.13 gi|336254691|ref|YP_004597798.1| - 0.04 12.7 0.2 0.088 11.6 0.1 1.5 2 0 0 2 2 2 0 FMN-dependent dehydrogenase IGPS PF00218.16 gi|336254691|ref|YP_004597798.1| - 0.14 11.1 0.0 0.62 9.0 0.0 1.8 2 0 0 2 2 2 0 Indole-3-glycerol phosphate synthase zinc_ribbon_2 PF13240.1 gi|336254692|ref|YP_004597799.1| - 0.00012 21.4 18.6 0.019 14.4 4.1 2.3 2 0 0 2 2 2 2 zinc-ribbon domain NOB1_Zn_bind PF08772.6 gi|336254692|ref|YP_004597799.1| - 0.00029 20.6 1.9 0.58 10.0 0.1 2.5 2 1 0 2 2 2 2 Nin one binding (NOB1) Zn-ribbon like zf-ribbon_3 PF13248.1 gi|336254692|ref|YP_004597799.1| - 0.0023 17.0 14.5 0.051 12.7 2.9 2.6 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|336254692|ref|YP_004597799.1| - 0.0083 15.9 12.5 0.078 12.8 8.5 2.1 1 1 1 2 2 2 2 Double zinc ribbon Ribosomal_L37e PF01907.14 gi|336254692|ref|YP_004597799.1| - 0.023 14.4 2.5 4.8 7.0 0.1 2.5 2 1 0 2 2 2 0 Ribosomal protein L37e zf-C2HC5 PF06221.8 gi|336254692|ref|YP_004597799.1| - 0.036 13.8 2.4 1.5 8.6 0.1 2.5 2 0 0 2 2 2 0 Putative zinc finger motif, C2HC5-type ARL6IP6 PF15062.1 gi|336254692|ref|YP_004597799.1| - 0.057 13.3 0.3 0.099 12.5 0.2 1.3 1 0 0 1 1 1 0 Haemopoietic lineage transmembrane helix Nudix_N_2 PF14803.1 gi|336254692|ref|YP_004597799.1| - 0.34 10.6 7.5 15 5.3 0.1 4.1 3 1 1 4 4 4 0 Nudix N-terminal Rubredoxin PF00301.15 gi|336254692|ref|YP_004597799.1| - 0.42 10.5 8.3 0.29 11.0 0.2 3.1 2 1 0 2 2 2 0 Rubredoxin zf-MYND PF01753.13 gi|336254692|ref|YP_004597799.1| - 1.6 8.6 9.7 4.6 7.1 1.1 2.3 2 0 0 2 2 2 0 MYND finger zf-Mss51 PF13824.1 gi|336254692|ref|YP_004597799.1| - 2.3 8.1 8.5 0.38 10.6 0.6 2.5 2 0 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 RNA_pol_L_2 PF13656.1 gi|336254693|ref|YP_004597800.1| - 1.7e-19 68.9 0.0 2.1e-19 68.7 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.19 gi|336254693|ref|YP_004597800.1| - 6.4e-10 38.0 0.0 9.3e-10 37.4 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Rhomboid PF01694.17 gi|336254694|ref|YP_004597801.1| - 7.2e-06 26.0 12.9 5e-05 23.3 5.3 3.2 4 0 0 4 4 4 2 Rhomboid family DUF1700 PF08006.6 gi|336254694|ref|YP_004597801.1| - 0.23 10.7 0.9 0.65 9.2 0.6 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF1700) ABC_tran PF00005.22 gi|336254695|ref|YP_004597802.1| - 9.8e-34 116.5 0.0 1.3e-33 116.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_29 PF13555.1 gi|336254695|ref|YP_004597802.1| - 7.4e-07 28.6 0.1 1.4e-06 27.7 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_21 PF13304.1 gi|336254695|ref|YP_004597802.1| - 2e-06 27.9 0.0 0.0069 16.3 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|336254695|ref|YP_004597802.1| - 7.3e-06 25.3 0.0 0.00014 21.2 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain ArgK PF03308.11 gi|336254695|ref|YP_004597802.1| - 0.007 15.1 0.2 0.011 14.5 0.2 1.3 1 0 0 1 1 1 1 ArgK protein NTPase_1 PF03266.10 gi|336254695|ref|YP_004597802.1| - 0.0091 15.7 0.1 0.37 10.4 0.0 2.2 2 0 0 2 2 2 1 NTPase AAA_23 PF13476.1 gi|336254695|ref|YP_004597802.1| - 0.0092 16.3 0.0 0.013 15.8 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|336254695|ref|YP_004597802.1| - 0.01 15.4 0.6 0.078 12.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|336254695|ref|YP_004597802.1| - 0.012 16.4 0.0 0.029 15.1 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|336254695|ref|YP_004597802.1| - 0.012 15.7 0.2 0.077 13.1 0.1 2.0 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|336254695|ref|YP_004597802.1| - 0.012 15.3 0.2 0.061 13.0 0.0 2.3 2 1 0 2 2 2 0 Part of AAA domain Mg_chelatase PF01078.16 gi|336254695|ref|YP_004597802.1| - 0.018 14.2 0.0 0.027 13.6 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA PF00004.24 gi|336254695|ref|YP_004597802.1| - 0.037 14.2 0.0 0.087 13.0 0.0 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SbcCD_C PF13558.1 gi|336254695|ref|YP_004597802.1| - 0.053 13.4 0.1 0.6 10.0 0.1 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_16 PF13191.1 gi|336254695|ref|YP_004597802.1| - 0.058 13.3 4.2 0.1 12.6 1.7 2.3 2 1 0 2 2 2 0 AAA ATPase domain AAA_18 PF13238.1 gi|336254695|ref|YP_004597802.1| - 0.13 12.5 0.0 0.28 11.4 0.0 1.7 2 0 0 2 2 2 0 AAA domain PRK PF00485.13 gi|336254695|ref|YP_004597802.1| - 0.13 11.7 0.0 0.19 11.2 0.0 1.2 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family DUF258 PF03193.11 gi|336254695|ref|YP_004597802.1| - 0.18 10.9 0.0 0.27 10.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_33 PF13671.1 gi|336254695|ref|YP_004597802.1| - 0.31 10.9 3.2 0.69 9.7 1.6 2.2 1 1 0 1 1 1 0 AAA domain MacB_PCD PF12704.2 gi|336254696|ref|YP_004597803.1| - 6.7e-12 45.4 0.2 6.7e-12 45.4 0.1 2.0 3 0 0 3 3 3 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|336254696|ref|YP_004597803.1| - 8.8e-09 35.1 7.8 8.8e-09 35.1 5.4 2.0 2 0 0 2 2 2 1 FtsX-like permease family ABC2_membrane PF01061.19 gi|336254696|ref|YP_004597803.1| - 0.94 8.5 5.6 0.51 9.4 2.1 1.7 2 0 0 2 2 2 0 ABC-2 type transporter MacB_PCD PF12704.2 gi|336254697|ref|YP_004597804.1| - 5.9e-22 78.3 0.2 5.9e-22 78.3 0.1 1.9 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|336254697|ref|YP_004597804.1| - 1.6e-16 60.1 10.5 3.2e-16 59.1 5.2 2.1 2 0 0 2 2 2 1 FtsX-like permease family YjgP_YjgQ PF03739.9 gi|336254697|ref|YP_004597804.1| - 0.045 12.4 5.8 0.027 13.2 0.5 2.1 2 0 0 2 2 2 0 Predicted permease YjgP/YjgQ family Methyltransf_26 PF13659.1 gi|336254698|ref|YP_004597805.1| - 8.5e-16 58.0 0.2 1.2e-15 57.6 0.2 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|336254698|ref|YP_004597805.1| - 3.7e-14 52.4 0.0 5.5e-14 51.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.8 gi|336254698|ref|YP_004597805.1| - 5.5e-12 45.4 0.2 7.7e-12 44.9 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_18 PF12847.2 gi|336254698|ref|YP_004597805.1| - 2.6e-10 40.8 0.2 5.4e-10 39.8 0.1 1.5 1 1 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|336254698|ref|YP_004597805.1| - 9.3e-10 38.3 0.0 1.1e-09 38.0 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_31 PF13847.1 gi|336254698|ref|YP_004597805.1| - 2.8e-09 36.7 0.0 4.1e-09 36.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|336254698|ref|YP_004597805.1| - 2.6e-06 27.7 0.0 1.2e-05 25.5 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|336254698|ref|YP_004597805.1| - 5e-06 26.9 0.0 9.1e-06 26.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|336254698|ref|YP_004597805.1| - 0.00026 20.4 0.0 0.00033 20.1 0.0 1.1 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_3 PF01596.12 gi|336254698|ref|YP_004597805.1| - 0.00067 18.7 0.0 0.00092 18.3 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_12 PF08242.7 gi|336254698|ref|YP_004597805.1| - 0.00091 19.6 0.0 0.0017 18.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|336254698|ref|YP_004597805.1| - 0.0012 18.4 0.0 0.0015 18.1 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Ubie_methyltran PF01209.13 gi|336254698|ref|YP_004597805.1| - 0.0012 17.9 0.0 0.0029 16.7 0.0 1.5 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Met_10 PF02475.11 gi|336254698|ref|YP_004597805.1| - 0.0015 18.1 0.0 0.0019 17.8 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_32 PF13679.1 gi|336254698|ref|YP_004597805.1| - 0.0023 17.6 0.0 0.0037 16.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|336254698|ref|YP_004597805.1| - 0.0068 16.1 0.0 0.008 15.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|336254698|ref|YP_004597805.1| - 0.021 13.8 0.0 0.027 13.5 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase PCMT PF01135.14 gi|336254698|ref|YP_004597805.1| - 0.022 14.3 0.0 0.029 13.9 0.0 1.1 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) ADH_zinc_N PF00107.21 gi|336254698|ref|YP_004597805.1| - 0.049 13.1 0.5 0.15 11.5 0.1 1.8 2 0 0 2 2 2 0 Zinc-binding dehydrogenase zf-FPG_IleRS PF06827.9 gi|336254700|ref|YP_004597807.1| - 8.6e-05 22.0 0.4 0.00012 21.5 0.3 1.3 1 0 0 1 1 1 1 Zinc finger found in FPG and IleRS zf-TFIIB PF13453.1 gi|336254700|ref|YP_004597807.1| - 0.00014 20.9 2.6 0.00022 20.3 1.8 1.3 1 0 0 1 1 1 1 Transcription factor zinc-finger DZR PF12773.2 gi|336254700|ref|YP_004597807.1| - 0.02 14.7 0.3 0.032 14.0 0.2 1.4 1 0 0 1 1 1 0 Double zinc ribbon ASCH PF04266.9 gi|336254700|ref|YP_004597807.1| - 0.081 13.3 0.0 0.1 13.0 0.0 1.1 1 0 0 1 1 1 0 ASCH domain Zn_Tnp_IS1 PF03811.8 gi|336254700|ref|YP_004597807.1| - 0.13 11.8 5.2 0.7 9.4 0.3 2.2 2 0 0 2 2 2 0 InsA N-terminal domain UPF0547 PF10571.4 gi|336254700|ref|YP_004597807.1| - 0.14 11.9 3.0 0.41 10.3 2.1 1.8 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.1 gi|336254700|ref|YP_004597807.1| - 0.15 11.2 1.1 3 7.1 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|336254700|ref|YP_004597807.1| - 0.19 12.0 3.6 2.4 8.5 2.5 2.2 1 1 0 1 1 1 0 Restriction alleviation protein Lar DUF2387 PF09526.5 gi|336254700|ref|YP_004597807.1| - 0.26 11.2 2.0 0.48 10.3 1.4 1.7 1 1 0 1 1 1 0 Probable metal-binding protein (DUF2387) zf-IS66 PF13005.2 gi|336254700|ref|YP_004597807.1| - 0.51 10.3 0.2 0.51 10.3 0.1 2.4 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 Zn-ribbon_8 PF09723.5 gi|336254700|ref|YP_004597807.1| - 0.59 10.1 4.1 3.1 7.8 2.8 2.0 1 1 0 1 1 1 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|336254700|ref|YP_004597807.1| - 0.83 9.5 4.2 2.7 7.8 0.1 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-RING_3 PF14369.1 gi|336254700|ref|YP_004597807.1| - 4.2 7.4 7.7 8.5 6.4 0.8 2.4 1 1 1 2 2 2 0 zinc-finger Actin PF00022.14 gi|336254701|ref|YP_004597808.1| - 0.0028 16.1 0.0 0.58 8.5 0.0 2.2 2 0 0 2 2 2 2 Actin Aegerolysin PF06355.8 gi|336254702|ref|YP_004597809.1| - 0.06 13.2 0.2 0.12 12.2 0.1 1.4 1 0 0 1 1 1 0 Aegerolysin Nucleos_tra2_N PF01773.15 gi|336254702|ref|YP_004597809.1| - 0.064 13.6 0.6 1.1 9.6 0.0 2.3 2 0 0 2 2 2 0 Na+ dependent nucleoside transporter N-terminus Diphthamide_syn PF01866.12 gi|336254703|ref|YP_004597810.1| - 1.1e-93 313.8 0.0 1.3e-93 313.6 0.0 1.0 1 0 0 1 1 1 1 Putative diphthamide synthesis protein DUF3529 PF12046.3 gi|336254703|ref|YP_004597810.1| - 0.21 10.6 0.0 0.33 9.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3529) DUF2513 PF10711.4 gi|336254704|ref|YP_004597811.1| - 4.9e-05 23.3 0.1 0.14 12.2 0.0 2.2 2 0 0 2 2 2 2 Hypothetical protein (DUF2513) HTH_20 PF12840.2 gi|336254704|ref|YP_004597811.1| - 0.013 15.3 9.1 0.86 9.4 1.0 4.0 4 1 0 4 4 4 0 Helix-turn-helix domain HTH_5 PF01022.15 gi|336254704|ref|YP_004597811.1| - 2 8.1 5.2 8.3 6.1 0.1 2.9 4 0 0 4 4 4 0 Bacterial regulatory protein, arsR family Lactamase_B_2 PF12706.2 gi|336254705|ref|YP_004597812.1| - 2.3e-17 63.1 0.2 3.1e-17 62.7 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|336254705|ref|YP_004597812.1| - 1.2e-11 44.5 0.2 1.6e-11 44.1 0.1 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|336254705|ref|YP_004597812.1| - 0.00028 20.5 13.4 0.0037 16.9 9.3 2.2 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily AAA_13 PF13166.1 gi|336254706|ref|YP_004597813.1| - 5.8e-08 31.6 1.3 1.2e-07 30.6 0.9 1.5 1 0 0 1 1 1 1 AAA domain Laminin_II PF06009.7 gi|336254706|ref|YP_004597813.1| - 1.5e-07 31.2 7.2 0.0011 18.7 1.5 2.5 1 1 1 2 2 2 2 Laminin Domain II IncA PF04156.9 gi|336254706|ref|YP_004597813.1| - 1.8e-07 30.9 13.4 0.0007 19.2 1.0 2.9 1 1 2 3 3 3 2 IncA protein Spc7 PF08317.6 gi|336254706|ref|YP_004597813.1| - 5.4e-07 28.5 9.0 0.002 16.8 2.2 2.6 1 1 1 2 2 2 2 Spc7 kinetochore protein CENP-F_leu_zip PF10473.4 gi|336254706|ref|YP_004597813.1| - 5.8e-06 26.2 19.5 1.1e-05 25.2 2.3 2.9 2 1 1 3 3 2 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 NPV_P10 PF05531.7 gi|336254706|ref|YP_004597813.1| - 9.1e-06 25.8 22.0 0.0022 18.2 4.3 4.2 1 1 2 3 3 3 2 Nucleopolyhedrovirus P10 protein GAS PF13851.1 gi|336254706|ref|YP_004597813.1| - 1.8e-05 24.0 1.8 6.8e-05 22.1 0.1 2.3 2 1 0 2 2 1 1 Growth-arrest specific micro-tubule binding EzrA PF06160.7 gi|336254706|ref|YP_004597813.1| - 1.9e-05 23.0 7.9 3.2e-05 22.3 5.3 1.5 1 1 0 1 1 1 1 Septation ring formation regulator, EzrA Baculo_PEP_C PF04513.7 gi|336254706|ref|YP_004597813.1| - 4.1e-05 23.4 7.4 0.0024 17.6 1.7 2.5 1 1 1 2 2 2 2 Baculovirus polyhedron envelope protein, PEP, C terminus Reo_sigmaC PF04582.7 gi|336254706|ref|YP_004597813.1| - 8.2e-05 21.9 12.3 0.054 12.6 2.0 2.0 1 1 0 1 1 1 1 Reovirus sigma C capsid protein Lebercilin PF15619.1 gi|336254706|ref|YP_004597813.1| - 0.00019 20.8 0.1 0.00041 19.8 0.0 1.6 1 1 0 1 1 1 1 Ciliary protein causing Leber congenital amaurosis disease COG2 PF06148.6 gi|336254706|ref|YP_004597813.1| - 0.0004 20.2 6.6 0.86 9.4 2.2 3.3 1 1 1 2 2 2 2 COG (conserved oligomeric Golgi) complex component, COG2 TBPIP PF07106.8 gi|336254706|ref|YP_004597813.1| - 0.0005 19.6 7.5 0.041 13.4 0.9 2.6 1 1 2 3 3 3 2 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF1664 PF07889.7 gi|336254706|ref|YP_004597813.1| - 0.00057 19.6 13.1 0.012 15.3 1.7 3.3 1 1 2 3 3 3 2 Protein of unknown function (DUF1664) Syntaxin PF00804.20 gi|336254706|ref|YP_004597813.1| - 0.00064 19.8 3.8 1.1 9.4 0.3 3.4 1 1 2 3 3 3 2 Syntaxin Prefoldin_2 PF01920.15 gi|336254706|ref|YP_004597813.1| - 0.00074 19.2 10.2 0.0045 16.7 2.8 3.5 1 1 1 2 2 2 1 Prefoldin subunit DUF2730 PF10805.3 gi|336254706|ref|YP_004597813.1| - 0.00075 19.2 6.4 0.25 11.0 0.5 2.6 1 1 1 2 2 2 2 Protein of unknown function (DUF2730) ADIP PF11559.3 gi|336254706|ref|YP_004597813.1| - 0.00079 19.3 0.1 0.39 10.6 0.0 2.5 1 1 1 2 2 2 1 Afadin- and alpha -actinin-Binding BLOC1_2 PF10046.4 gi|336254706|ref|YP_004597813.1| - 0.00083 19.4 13.3 0.12 12.4 0.7 3.9 1 1 2 3 3 3 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 TMF_TATA_bd PF12325.3 gi|336254706|ref|YP_004597813.1| - 0.00086 19.0 14.2 0.0026 17.4 0.2 3.4 1 1 2 3 3 3 1 TATA element modulatory factor 1 TATA binding FH2 PF02181.18 gi|336254706|ref|YP_004597813.1| - 0.0018 17.2 5.4 0.12 11.1 3.7 2.4 1 1 0 1 1 1 1 Formin Homology 2 Domain V_ATPase_I PF01496.14 gi|336254706|ref|YP_004597813.1| - 0.0018 16.2 6.0 0.04 11.8 0.7 2.2 1 1 1 2 2 2 2 V-type ATPase 116kDa subunit family MscS_porin PF12795.2 gi|336254706|ref|YP_004597813.1| - 0.0019 17.6 2.6 0.8 8.9 0.5 2.8 1 1 1 2 2 2 1 Mechanosensitive ion channel porin domain FlaC_arch PF05377.6 gi|336254706|ref|YP_004597813.1| - 0.0031 17.3 13.8 0.33 10.8 0.5 4.3 1 1 4 5 5 5 2 Flagella accessory protein C (FlaC) Tropomyosin_1 PF12718.2 gi|336254706|ref|YP_004597813.1| - 0.0033 17.2 6.3 0.0033 17.2 4.4 4.2 2 2 2 4 4 3 3 Tropomyosin like APG6 PF04111.7 gi|336254706|ref|YP_004597813.1| - 0.0041 16.2 15.1 0.012 14.7 1.1 2.5 2 1 1 3 3 2 2 Autophagy protein Apg6 Prefoldin PF02996.12 gi|336254706|ref|YP_004597813.1| - 0.0043 16.7 7.3 3.2 7.4 0.1 4.2 2 1 1 4 4 4 0 Prefoldin subunit Rootletin PF15035.1 gi|336254706|ref|YP_004597813.1| - 0.0051 16.8 1.5 0.0051 16.8 1.0 2.7 1 1 1 3 3 2 1 Ciliary rootlet component, centrosome cohesion TMF_DNA_bd PF12329.3 gi|336254706|ref|YP_004597813.1| - 0.006 16.3 6.3 9.5 6.1 0.3 4.4 1 1 3 4 4 3 0 TATA element modulatory factor 1 DNA binding Spectrin PF00435.16 gi|336254706|ref|YP_004597813.1| - 0.012 15.9 2.7 0.012 15.9 1.8 3.9 2 1 4 6 6 5 0 Spectrin repeat RmuC PF02646.11 gi|336254706|ref|YP_004597813.1| - 0.013 14.4 0.2 2.9 6.6 0.0 2.8 1 1 1 2 2 2 0 RmuC family Mod_r PF07200.8 gi|336254706|ref|YP_004597813.1| - 0.015 15.2 4.0 1.5 8.6 0.7 2.9 1 1 1 2 2 2 0 Modifier of rudimentary (Mod(r)) protein Cortex-I_coil PF09304.5 gi|336254706|ref|YP_004597813.1| - 0.016 15.2 6.7 0.65 10.0 0.6 3.1 2 1 0 2 2 2 0 Cortexillin I, coiled coil Mnd1 PF03962.10 gi|336254706|ref|YP_004597813.1| - 0.018 14.6 5.7 0.032 13.9 1.2 2.6 1 1 1 2 2 2 0 Mnd1 family CCDC-167 PF15188.1 gi|336254706|ref|YP_004597813.1| - 0.019 14.8 10.0 1.2 9.1 0.4 3.8 2 1 1 3 3 3 0 Coiled-coil domain-containing protein 167 DUF972 PF06156.8 gi|336254706|ref|YP_004597813.1| - 0.023 15.0 5.5 1.7 9.0 0.2 3.2 2 1 1 3 3 2 0 Protein of unknown function (DUF972) Atg14 PF10186.4 gi|336254706|ref|YP_004597813.1| - 0.04 12.8 0.0 0.27 10.1 0.0 1.8 1 1 1 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 DHC_N1 PF08385.7 gi|336254706|ref|YP_004597813.1| - 0.04 12.3 1.4 0.057 11.7 1.0 1.2 1 0 0 1 1 1 0 Dynein heavy chain, N-terminal region 1 MCPsignal PF00015.16 gi|336254706|ref|YP_004597813.1| - 0.049 13.1 9.2 0.62 9.5 2.4 2.8 1 1 1 2 2 2 0 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF1395 PF07160.7 gi|336254706|ref|YP_004597813.1| - 0.1 12.0 1.8 7.1 6.0 0.1 2.8 1 1 0 2 2 2 0 Protein of unknown function (DUF1395) KCNQ_channel PF03520.9 gi|336254706|ref|YP_004597813.1| - 0.11 11.7 1.0 0.42 9.8 0.1 2.3 1 1 1 2 2 2 0 KCNQ voltage-gated potassium channel Nsp1_C PF05064.8 gi|336254706|ref|YP_004597813.1| - 0.12 12.0 10.3 0.84 9.3 2.3 3.1 1 1 2 3 3 3 0 Nsp1-like C-terminal region Fib_alpha PF08702.5 gi|336254706|ref|YP_004597813.1| - 0.12 12.4 3.1 3.6 7.7 0.4 2.5 1 1 2 3 3 3 0 Fibrinogen alpha/beta chain family DUF2968 PF11180.3 gi|336254706|ref|YP_004597813.1| - 0.12 11.7 2.6 1.6 8.0 0.1 2.9 1 1 0 2 2 2 0 Protein of unknown function (DUF2968) Fzo_mitofusin PF04799.8 gi|336254706|ref|YP_004597813.1| - 0.18 11.1 2.5 0.51 9.6 0.2 2.4 1 1 0 2 2 2 0 fzo-like conserved region DUF4201 PF13870.1 gi|336254706|ref|YP_004597813.1| - 0.18 11.2 1.0 13 5.1 0.1 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4201) DUF3450 PF11932.3 gi|336254706|ref|YP_004597813.1| - 0.19 10.9 6.3 0.83 8.8 0.3 3.0 1 1 2 3 3 3 0 Protein of unknown function (DUF3450) DegS PF05384.6 gi|336254706|ref|YP_004597813.1| - 0.23 10.6 7.0 1.1 8.4 0.8 2.8 2 1 0 2 2 2 0 Sensor protein DegS DUF948 PF06103.6 gi|336254706|ref|YP_004597813.1| - 0.24 11.2 17.2 0.42 10.5 3.1 3.2 2 1 2 4 4 3 0 Bacterial protein of unknown function (DUF948) Filament PF00038.16 gi|336254706|ref|YP_004597813.1| - 0.34 10.3 17.2 0.93 8.9 8.0 2.7 2 1 0 2 2 1 0 Intermediate filament protein Prominin PF05478.6 gi|336254706|ref|YP_004597813.1| - 0.36 8.2 2.8 1 6.7 2.0 1.5 1 1 0 1 1 1 0 Prominin TPR_MLP1_2 PF07926.7 gi|336254706|ref|YP_004597813.1| - 0.37 10.5 9.1 0.99 9.1 2.7 3.1 2 1 0 2 2 1 0 TPR/MLP1/MLP2-like protein Tup_N PF08581.5 gi|336254706|ref|YP_004597813.1| - 0.4 10.8 6.7 5.7 7.2 0.2 3.0 2 1 0 2 2 2 0 Tup N-terminal Cauli_AT PF03233.8 gi|336254706|ref|YP_004597813.1| - 0.52 10.0 1.7 81 2.8 1.1 3.3 2 1 1 3 3 2 0 Aphid transmission protein Sec34 PF04136.10 gi|336254706|ref|YP_004597813.1| - 0.6 9.7 3.9 9.9 5.8 0.2 2.4 1 1 1 2 2 2 0 Sec34-like family Syntaxin-6_N PF09177.6 gi|336254706|ref|YP_004597813.1| - 1 9.8 13.5 1.9e+03 -0.8 9.4 3.6 1 1 0 1 1 1 0 Syntaxin 6, N-terminal XhlA PF10779.4 gi|336254706|ref|YP_004597813.1| - 1 9.3 11.7 1.7 8.6 0.9 3.9 1 1 2 3 3 3 0 Haemolysin XhlA DUF2353 PF09789.4 gi|336254706|ref|YP_004597813.1| - 1.1 8.4 9.4 2.8 7.0 6.1 1.6 1 1 0 1 1 1 0 Uncharacterized coiled-coil protein (DUF2353) SlyX PF04102.7 gi|336254706|ref|YP_004597813.1| - 1.4 9.3 10.8 5.4 7.4 1.0 3.7 2 1 2 4 4 3 0 SlyX ATG16 PF08614.6 gi|336254706|ref|YP_004597813.1| - 1.5 8.6 17.0 0.013 15.3 3.7 2.9 2 1 1 3 3 2 0 Autophagy protein 16 (ATG16) Seryl_tRNA_N PF02403.17 gi|336254706|ref|YP_004597813.1| - 2 8.4 12.0 4.2 7.4 0.4 3.6 2 1 2 4 4 3 0 Seryl-tRNA synthetase N-terminal domain DUF3552 PF12072.3 gi|336254706|ref|YP_004597813.1| - 2.2 7.4 13.3 0.35 10.0 0.6 2.7 2 1 1 3 3 2 0 Domain of unknown function (DUF3552) Sec3_C PF09763.4 gi|336254706|ref|YP_004597813.1| - 2.6 6.0 12.1 0.11 10.6 1.6 2.2 1 1 1 2 2 2 0 Exocyst complex component Sec3 DivIC PF04977.10 gi|336254706|ref|YP_004597813.1| - 2.9 7.4 14.1 0.59 9.6 0.0 4.5 2 1 4 6 6 5 0 Septum formation initiator DUF812 PF05667.6 gi|336254706|ref|YP_004597813.1| - 3.6 5.9 22.5 0.097 11.1 6.0 3.3 1 1 1 3 3 2 0 Protein of unknown function (DUF812) FUSC PF04632.7 gi|336254706|ref|YP_004597813.1| - 3.7 5.8 6.8 11 4.3 4.5 1.9 1 1 0 1 1 1 0 Fusaric acid resistance protein family Lectin_N PF03954.9 gi|336254706|ref|YP_004597813.1| - 4.2 6.7 5.7 48 3.3 3.9 2.3 1 1 0 1 1 1 0 Hepatic lectin, N-terminal domain LPP PF04728.8 gi|336254706|ref|YP_004597813.1| - 4.9 7.0 20.3 2.4 8.0 5.1 4.6 2 1 4 6 6 4 0 Lipoprotein leucine-zipper DUF4140 PF13600.1 gi|336254706|ref|YP_004597813.1| - 5.1 7.5 21.2 5.4 7.5 0.5 5.2 3 1 2 5 5 3 0 N-terminal domain of unknown function (DUF4140) DUF4559 PF15112.1 gi|336254706|ref|YP_004597813.1| - 5.5 6.0 12.2 10 5.1 0.4 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4559) DUF1515 PF07439.6 gi|336254706|ref|YP_004597813.1| - 9 6.1 11.5 4.4 7.1 3.3 2.7 1 1 3 4 4 4 0 Protein of unknown function (DUF1515) HTH_20 PF12840.2 gi|336254709|ref|YP_004597816.1| - 2.2e-12 46.5 0.2 4.4e-12 45.6 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|336254709|ref|YP_004597816.1| - 8.6e-10 38.1 0.0 1.4e-09 37.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|336254709|ref|YP_004597816.1| - 2.3e-05 24.0 0.0 3.4e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|336254709|ref|YP_004597816.1| - 3.3e-05 23.5 0.0 5.4e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|336254709|ref|YP_004597816.1| - 0.0011 18.5 0.0 0.0019 17.7 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|336254709|ref|YP_004597816.1| - 0.0014 17.9 0.0 0.0024 17.1 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|336254709|ref|YP_004597816.1| - 0.0071 15.9 0.1 0.013 15.0 0.1 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain TFIIE_alpha PF02002.12 gi|336254709|ref|YP_004597816.1| - 0.012 15.0 0.0 0.017 14.5 0.0 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_34 PF13601.1 gi|336254709|ref|YP_004597816.1| - 0.024 14.6 0.0 0.034 14.1 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_12 PF08461.5 gi|336254709|ref|YP_004597816.1| - 0.028 14.1 0.4 0.052 13.2 0.1 1.6 2 0 0 2 2 2 0 Ribonuclease R winged-helix domain HTH_27 PF13463.1 gi|336254709|ref|YP_004597816.1| - 0.099 12.9 0.1 0.3 11.4 0.0 1.7 2 0 0 2 2 2 0 Winged helix DNA-binding domain B-block_TFIIIC PF04182.7 gi|336254709|ref|YP_004597816.1| - 0.13 12.1 0.0 0.18 11.6 0.0 1.3 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC Phage_integrase PF00589.17 gi|336254710|ref|YP_004597817.1| - 5.3e-17 62.0 0.0 1e-16 61.0 0.0 1.5 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.12 gi|336254710|ref|YP_004597817.1| - 2.7e-08 33.8 0.7 8.8e-08 32.1 0.5 1.9 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.1 gi|336254710|ref|YP_004597817.1| - 9.8e-06 25.8 0.4 2.2e-05 24.6 0.3 1.6 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_3 PF14659.1 gi|336254710|ref|YP_004597817.1| - 0.31 11.3 1.6 2.5 8.4 0.0 2.9 3 0 0 3 3 3 0 Phage integrase, N-terminal SAM-like domain DUF2064 PF09837.4 gi|336254711|ref|YP_004597818.1| - 0.026 14.1 1.1 0.13 11.8 0.7 1.9 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2064) zf-C2H2_6 PF13912.1 gi|336254712|ref|YP_004597819.1| - 0.0006 19.6 11.4 0.0072 16.1 1.8 2.8 3 1 0 3 3 3 2 C2H2-type zinc finger zf-C2HC_2 PF13913.1 gi|336254712|ref|YP_004597819.1| - 0.003 17.1 3.2 0.15 11.7 0.1 2.4 2 0 0 2 2 2 1 zinc-finger of a C2HC-type zf-C2H2 PF00096.21 gi|336254712|ref|YP_004597819.1| - 0.0055 16.9 9.7 0.13 12.6 0.9 3.2 3 0 0 3 3 3 1 Zinc finger, C2H2 type Elf1 PF05129.8 gi|336254712|ref|YP_004597819.1| - 0.06 13.0 3.4 0.32 10.7 2.3 2.0 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like Zn_ribbon_recom PF13408.1 gi|336254712|ref|YP_004597819.1| - 0.14 12.4 1.3 0.43 10.8 0.1 2.0 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain FYVE PF01363.16 gi|336254712|ref|YP_004597819.1| - 0.14 12.0 4.3 0.17 11.7 3.0 1.3 1 0 0 1 1 1 0 FYVE zinc finger zf-TRAF PF02176.13 gi|336254712|ref|YP_004597819.1| - 0.15 12.4 4.7 2.6 8.5 2.2 2.4 2 1 0 2 2 2 0 TRAF-type zinc finger zf-HIT PF04438.11 gi|336254712|ref|YP_004597819.1| - 0.18 11.4 4.0 6.4 6.5 0.1 3.1 3 0 0 3 3 3 0 HIT zinc finger zf-H2C2_2 PF13465.1 gi|336254712|ref|YP_004597819.1| - 0.24 11.7 6.0 8.4 6.8 0.1 3.3 3 0 0 3 3 3 0 Zinc-finger double domain zf-C2H2_jaz PF12171.3 gi|336254712|ref|YP_004597819.1| - 0.27 11.4 5.2 5.4 7.2 0.9 2.5 2 0 0 2 2 2 0 Zinc-finger double-stranded RNA-binding zf-C2H2_4 PF13894.1 gi|336254712|ref|YP_004597819.1| - 0.3 11.4 9.5 0.58 10.6 1.4 2.7 2 1 0 2 2 2 0 C2H2-type zinc finger Prok-RING_1 PF14446.1 gi|336254712|ref|YP_004597819.1| - 0.44 10.3 4.7 2.1 8.1 1.1 2.7 2 1 0 2 2 2 0 Prokaryotic RING finger family 1 zf-met PF12874.2 gi|336254712|ref|YP_004597819.1| - 1 9.6 4.1 2 8.7 0.2 2.5 2 1 0 2 2 2 0 Zinc-finger of C2H2 type zf-CHY PF05495.7 gi|336254712|ref|YP_004597819.1| - 1.2 9.3 5.9 1.8 8.7 4.1 1.3 1 0 0 1 1 1 0 CHY zinc finger zf-C3HC4_2 PF13923.1 gi|336254712|ref|YP_004597819.1| - 1.3 9.1 6.1 4.4 7.4 4.1 1.9 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) HypA PF01155.14 gi|336254712|ref|YP_004597819.1| - 1.3 8.7 6.7 1.4 8.6 0.9 2.0 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family DZR PF12773.2 gi|336254712|ref|YP_004597819.1| - 1.4 8.7 8.1 9.6 6.1 5.6 2.1 1 1 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|336254712|ref|YP_004597819.1| - 4.1 6.7 10.4 2 7.7 3.6 2.7 2 1 0 2 2 2 0 zinc-ribbon domain zf-RING_2 PF13639.1 gi|336254712|ref|YP_004597819.1| - 5 7.0 6.6 7.9 6.3 4.6 1.4 1 0 0 1 1 1 0 Ring finger domain C1_4 PF07975.7 gi|336254712|ref|YP_004597819.1| - 5.3 7.1 7.4 7.3 6.6 0.3 2.3 2 1 0 2 2 2 0 TFIIH C1-like domain C1_1 PF00130.17 gi|336254712|ref|YP_004597819.1| - 5.5 6.7 7.0 1.2e+02 2.5 4.9 2.3 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) IBR PF01485.16 gi|336254712|ref|YP_004597819.1| - 6.2 6.7 12.5 10 6.0 4.2 2.8 1 1 1 2 2 2 0 IBR domain HNH PF01844.18 gi|336254712|ref|YP_004597819.1| - 6.7 6.6 8.5 5.9 6.8 0.1 2.8 3 0 0 3 3 3 0 HNH endonuclease zinc_ribbon_2 PF13240.1 gi|336254712|ref|YP_004597819.1| - 8.2 6.0 9.2 4.2 6.9 1.2 2.9 3 0 0 3 3 3 0 zinc-ribbon domain Lyase_1 PF00206.15 gi|336254713|ref|YP_004597820.1| - 1.1e-111 372.9 0.3 1.6e-111 372.5 0.2 1.2 1 0 0 1 1 1 1 Lyase FumaraseC_C PF10415.4 gi|336254713|ref|YP_004597820.1| - 1.5e-23 82.5 2.2 2.9e-23 81.6 0.3 2.4 2 0 0 2 2 2 1 Fumarase C C-terminus SBP_bac_8 PF13416.1 gi|336254714|ref|YP_004597821.1| - 1.3e-19 71.0 3.3 1.8e-19 70.5 2.3 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.4 gi|336254714|ref|YP_004597821.1| - 0.35 10.9 9.2 1.3 9.2 6.4 1.9 1 1 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_1 PF00528.17 gi|336254715|ref|YP_004597822.1| - 7e-20 71.3 17.4 7e-20 71.3 12.1 2.3 1 1 1 2 2 2 2 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|336254716|ref|YP_004597823.1| - 2.6e-15 56.3 16.2 4.9e-15 55.5 11.2 1.5 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|336254717|ref|YP_004597824.1| - 2.5e-33 115.2 0.0 4.2e-33 114.5 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|336254717|ref|YP_004597824.1| - 4.3e-09 36.7 0.0 0.0011 19.0 0.0 2.2 1 1 0 2 2 2 2 AAA domain TOBE_2 PF08402.5 gi|336254717|ref|YP_004597824.1| - 1.3e-06 28.2 1.3 4.7e-05 23.2 0.4 3.1 2 1 0 2 2 2 1 TOBE domain SMC_N PF02463.14 gi|336254717|ref|YP_004597824.1| - 0.00016 20.9 0.2 0.0023 17.1 0.2 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain TOBE PF03459.12 gi|336254717|ref|YP_004597824.1| - 0.00066 19.7 1.4 0.016 15.2 0.2 3.3 3 1 0 3 3 2 1 TOBE domain DUF258 PF03193.11 gi|336254717|ref|YP_004597824.1| - 0.00078 18.6 0.0 0.0015 17.7 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|336254717|ref|YP_004597824.1| - 0.0017 18.4 0.0 0.0053 16.8 0.0 1.7 2 0 0 2 2 2 1 AAA domain Rad17 PF03215.10 gi|336254717|ref|YP_004597824.1| - 0.0035 16.1 0.0 0.005 15.5 0.0 1.2 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA_16 PF13191.1 gi|336254717|ref|YP_004597824.1| - 0.0053 16.7 0.3 0.018 15.0 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.1 gi|336254717|ref|YP_004597824.1| - 0.0062 16.0 0.0 0.015 14.8 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_33 PF13671.1 gi|336254717|ref|YP_004597824.1| - 0.0085 15.9 0.0 0.023 14.5 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.1 gi|336254717|ref|YP_004597824.1| - 0.014 14.4 0.0 0.41 9.6 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain AAA_25 PF13481.1 gi|336254717|ref|YP_004597824.1| - 0.016 14.6 0.1 0.31 10.4 0.0 2.7 3 0 0 3 3 3 0 AAA domain AAA PF00004.24 gi|336254717|ref|YP_004597824.1| - 0.016 15.4 0.0 0.1 12.7 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.1 gi|336254717|ref|YP_004597824.1| - 0.019 15.2 0.6 0.082 13.2 0.4 2.0 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|336254717|ref|YP_004597824.1| - 0.031 13.7 0.0 0.079 12.3 0.0 1.6 1 0 0 1 1 1 0 AAA-like domain AAA_14 PF13173.1 gi|336254717|ref|YP_004597824.1| - 0.05 13.5 0.0 0.19 11.6 0.0 2.1 2 0 0 2 2 1 0 AAA domain AAA_17 PF13207.1 gi|336254717|ref|YP_004597824.1| - 0.05 14.4 1.9 0.06 14.1 0.1 2.2 2 2 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|336254717|ref|YP_004597824.1| - 0.2 11.3 0.4 0.4 10.3 0.1 1.6 2 0 0 2 2 2 0 NACHT domain DUF4013 PF13197.1 gi|336254718|ref|YP_004597825.1| - 5.3e-11 42.1 11.0 5.3e-11 42.1 7.6 2.2 1 1 1 2 2 2 1 Protein of unknown function (DUF4013) bPH_2 PF03703.9 gi|336254719|ref|YP_004597826.1| - 3e-52 174.5 3.7 5.7e-21 74.3 0.2 3.3 3 0 0 3 3 3 3 Bacterial PH domain bPH_4 PF06713.6 gi|336254719|ref|YP_004597826.1| - 3.8e-06 26.6 0.0 0.0079 16.0 0.0 3.1 3 0 0 3 3 3 2 Bacterial PH domain bPH_3 PF14470.1 gi|336254719|ref|YP_004597826.1| - 0.004 17.3 0.0 2.3 8.5 0.0 2.5 2 0 0 2 2 2 2 Bacterial PH domain bPH_2 PF03703.9 gi|336254720|ref|YP_004597827.1| - 1.9e-13 50.2 0.0 2.7e-13 49.7 0.0 1.2 1 0 0 1 1 1 1 Bacterial PH domain BolA PF01722.13 gi|336254721|ref|YP_004597828.1| - 4.6e-22 77.7 0.2 5.3e-22 77.5 0.1 1.0 1 0 0 1 1 1 1 BolA-like protein NifU PF01106.12 gi|336254722|ref|YP_004597829.1| - 4.1e-10 39.2 0.0 4.8e-10 39.0 0.0 1.2 1 0 0 1 1 1 1 NifU-like domain TetR_C_7 PF14246.1 gi|336254722|ref|YP_004597829.1| - 0.059 13.6 0.1 0.29 11.3 0.1 1.9 2 0 0 2 2 2 0 AefR-like transcriptional repressor, C-terminal region VWA_2 PF13519.1 gi|336254723|ref|YP_004597830.1| - 0.089 12.9 0.4 0.13 12.3 0.3 1.3 1 1 0 1 1 1 0 von Willebrand factor type A domain MEDS PF14417.1 gi|336254724|ref|YP_004597831.1| - 1.3e-31 109.1 0.0 3e-31 107.9 0.0 1.5 1 0 0 1 1 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain HATPase_c PF02518.21 gi|336254724|ref|YP_004597831.1| - 7e-26 90.1 0.0 1.2e-25 89.3 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|336254724|ref|YP_004597831.1| - 2e-12 46.9 4.8 3.2e-12 46.2 0.3 3.2 2 1 1 3 3 3 1 His Kinase A (phospho-acceptor) domain GAF_3 PF13492.1 gi|336254724|ref|YP_004597831.1| - 5e-06 26.6 0.0 1.3e-05 25.2 0.0 1.8 1 0 0 1 1 1 1 GAF domain KaiC PF06745.8 gi|336254724|ref|YP_004597831.1| - 2.6e-05 23.4 0.0 5.3e-05 22.4 0.0 1.4 1 0 0 1 1 1 1 KaiC HATPase_c_5 PF14501.1 gi|336254724|ref|YP_004597831.1| - 0.0015 18.2 0.0 0.0031 17.1 0.0 1.5 1 0 0 1 1 1 1 GHKL domain Acetyltransf_10 PF13673.1 gi|336254724|ref|YP_004597831.1| - 0.029 14.4 0.2 0.15 12.1 0.0 2.3 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain GAF_2 PF13185.1 gi|336254724|ref|YP_004597831.1| - 0.037 14.5 0.2 0.23 11.9 0.1 2.3 1 1 0 1 1 1 0 GAF domain PALP PF00291.20 gi|336254724|ref|YP_004597831.1| - 0.16 11.1 0.0 0.3 10.2 0.0 1.4 1 0 0 1 1 1 0 Pyridoxal-phosphate dependent enzyme PAS_9 PF13426.1 gi|336254725|ref|YP_004597832.1| - 1.7e-62 208.2 0.5 1.4e-19 70.3 0.0 5.3 5 0 0 5 5 5 5 PAS domain PAS_4 PF08448.5 gi|336254725|ref|YP_004597832.1| - 1.9e-56 188.8 18.1 5.6e-13 48.8 0.2 5.6 5 0 0 5 5 5 5 PAS fold PAS PF00989.19 gi|336254725|ref|YP_004597832.1| - 6e-41 138.7 1.5 3.7e-14 52.4 0.0 5.8 5 1 0 5 5 5 5 PAS fold HATPase_c PF02518.21 gi|336254725|ref|YP_004597832.1| - 9.5e-29 99.3 0.0 3e-28 97.7 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|336254725|ref|YP_004597832.1| - 2e-21 75.0 6.0 4.2e-07 29.5 0.1 5.6 5 0 0 5 5 5 3 PAS domain PAS_3 PF08447.6 gi|336254725|ref|YP_004597832.1| - 1.2e-13 50.9 0.7 1.7e-05 24.8 0.1 5.0 4 0 0 4 4 4 2 PAS fold PAS_7 PF12860.2 gi|336254725|ref|YP_004597832.1| - 6.6e-13 48.6 3.0 0.0015 18.5 0.0 6.0 5 1 0 5 5 5 3 PAS fold HisKA PF00512.20 gi|336254725|ref|YP_004597832.1| - 3.3e-10 39.7 0.1 3.3e-10 39.7 0.1 3.6 3 1 1 4 4 4 1 His Kinase A (phospho-acceptor) domain PAS_10 PF13596.1 gi|336254725|ref|YP_004597832.1| - 1.7e-06 28.2 0.0 0.37 11.0 0.0 4.5 5 1 1 6 6 5 2 PAS domain HATPase_c_5 PF14501.1 gi|336254725|ref|YP_004597832.1| - 0.0003 20.4 0.0 0.00053 19.6 0.0 1.4 1 0 0 1 1 1 1 GHKL domain HATPase_c_2 PF13581.1 gi|336254725|ref|YP_004597832.1| - 0.0024 17.6 0.0 0.011 15.5 0.1 2.0 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.1 gi|336254725|ref|YP_004597832.1| - 0.053 13.1 0.0 1.6 8.4 0.0 2.5 2 1 0 2 2 2 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ApoLp-III PF07464.6 gi|336254725|ref|YP_004597832.1| - 0.054 13.5 0.9 0.47 10.4 0.0 2.3 2 0 0 2 2 2 0 Apolipophorin-III precursor (apoLp-III) PilJ PF13675.1 gi|336254725|ref|YP_004597832.1| - 3.3 8.0 9.4 0.17 12.2 0.4 3.5 4 1 0 4 4 4 0 Type IV pili methyl-accepting chemotaxis transducer N-term tRNA-synt_1e PF01406.14 gi|336254726|ref|YP_004597833.1| - 1.2e-105 352.9 0.0 3.1e-104 348.3 0.0 2.1 1 1 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain DALR_2 PF09190.6 gi|336254726|ref|YP_004597833.1| - 4.6e-15 55.6 2.5 2e-14 53.5 0.5 2.4 2 0 0 2 2 2 1 DALR domain tRNA-synt_1g PF09334.6 gi|336254726|ref|YP_004597833.1| - 1.4e-11 43.7 0.0 0.0001 21.0 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1f PF01921.13 gi|336254726|ref|YP_004597833.1| - 1.1e-09 37.4 0.0 8.3e-06 24.7 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1d PF00750.14 gi|336254726|ref|YP_004597833.1| - 3.1e-05 22.9 0.4 0.014 14.1 0.0 3.0 3 1 0 3 3 3 2 tRNA synthetases class I (R) tRNA-synt_1 PF00133.17 gi|336254726|ref|YP_004597833.1| - 6e-05 21.2 0.3 0.00055 18.0 0.0 2.4 2 1 0 2 2 2 1 tRNA synthetases class I (I, L, M and V) TipAS PF07739.8 gi|336254726|ref|YP_004597833.1| - 0.018 15.3 3.0 0.088 13.1 1.8 2.5 2 1 0 2 2 2 0 TipAS antibiotic-recognition domain FTO_CTD PF12934.2 gi|336254726|ref|YP_004597833.1| - 0.026 14.1 0.0 0.049 13.2 0.0 1.4 1 0 0 1 1 1 0 FTO C-terminal domain UVR PF02151.14 gi|336254726|ref|YP_004597833.1| - 0.031 13.7 0.4 0.031 13.7 0.3 2.1 2 0 0 2 2 2 0 UvrB/uvrC motif tRNA-synt_1c PF00749.16 gi|336254726|ref|YP_004597833.1| - 0.065 11.8 0.0 0.24 10.0 0.0 1.9 2 0 0 2 2 2 0 tRNA synthetases class I (E and Q), catalytic domain DUF1119 PF06550.6 gi|336254727|ref|YP_004597834.1| - 4.6e-87 291.7 13.6 5.5e-87 291.4 9.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1119) Peptidase_A22B PF04258.8 gi|336254727|ref|YP_004597834.1| - 3.1e-05 23.5 7.8 0.001 18.5 0.1 2.9 3 0 0 3 3 3 2 Signal peptide peptidase Presenilin PF01080.12 gi|336254727|ref|YP_004597834.1| - 0.046 12.5 7.6 0.077 11.8 0.3 2.4 3 0 0 3 3 3 0 Presenilin YqhR PF11085.3 gi|336254727|ref|YP_004597834.1| - 7.1 6.1 8.3 1 8.8 1.1 2.5 2 1 1 3 3 3 0 Conserved membrane protein YqhR Gar1 PF04410.9 gi|336254728|ref|YP_004597835.1| - 0.00025 20.5 0.0 0.00025 20.5 0.0 1.2 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region PRC PF05239.11 gi|336254728|ref|YP_004597835.1| - 0.086 12.7 0.1 0.13 12.1 0.1 1.4 1 0 0 1 1 1 0 PRC-barrel domain SRP19 PF01922.12 gi|336254729|ref|YP_004597836.1| - 1.2e-28 99.5 0.1 1.3e-28 99.3 0.1 1.0 1 0 0 1 1 1 1 SRP19 protein Peripla_BP_2 PF01497.13 gi|336254730|ref|YP_004597837.1| - 1.7e-25 89.5 2.6 1.7e-25 89.5 1.8 1.6 2 0 0 2 2 2 1 Periplasmic binding protein DUF1628 PF07790.6 gi|336254730|ref|YP_004597837.1| - 0.034 14.8 0.1 0.12 13.1 0.0 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF1628) DUF2457 PF10446.4 gi|336254730|ref|YP_004597837.1| - 6.7 5.3 12.5 12 4.5 8.6 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2457) FecCD PF01032.13 gi|336254731|ref|YP_004597838.1| - 9.3e-96 320.2 31.9 1.2e-95 319.9 22.1 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.12 gi|336254731|ref|YP_004597838.1| - 4.7e-05 22.8 14.2 4.7e-05 22.8 9.8 1.7 1 1 0 1 1 1 1 ABC 3 transport family ABC_tran PF00005.22 gi|336254732|ref|YP_004597839.1| - 5.1e-35 120.7 0.0 9.8e-35 119.8 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|336254732|ref|YP_004597839.1| - 2.6e-09 37.4 0.0 0.00013 22.0 0.0 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|336254732|ref|YP_004597839.1| - 0.00018 20.8 0.1 0.025 13.7 0.1 2.3 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|336254732|ref|YP_004597839.1| - 0.00028 21.2 0.0 0.00035 20.9 0.0 1.1 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|336254732|ref|YP_004597839.1| - 0.00038 19.6 0.1 0.00096 18.2 0.0 1.7 2 0 0 2 2 2 1 Zeta toxin AAA PF00004.24 gi|336254732|ref|YP_004597839.1| - 0.0032 17.6 0.0 0.0094 16.1 0.0 1.8 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.1 gi|336254732|ref|YP_004597839.1| - 0.0033 16.9 0.1 0.0063 16.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|336254732|ref|YP_004597839.1| - 0.0044 16.4 0.0 0.024 14.0 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.1 gi|336254732|ref|YP_004597839.1| - 0.0057 16.2 0.0 0.014 15.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain UPF0079 PF02367.12 gi|336254732|ref|YP_004597839.1| - 0.0088 15.6 0.0 0.015 14.8 0.0 1.3 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 AAA_22 PF13401.1 gi|336254732|ref|YP_004597839.1| - 0.018 15.1 0.1 0.1 12.7 0.1 2.1 1 1 0 1 1 1 0 AAA domain cobW PF02492.14 gi|336254732|ref|YP_004597839.1| - 0.03 13.7 0.2 0.09 12.2 0.0 1.9 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain NTPase_1 PF03266.10 gi|336254732|ref|YP_004597839.1| - 0.033 13.9 0.0 0.1 12.2 0.0 1.9 2 0 0 2 2 2 0 NTPase DUF258 PF03193.11 gi|336254732|ref|YP_004597839.1| - 0.039 13.1 0.0 0.077 12.1 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 NACHT PF05729.7 gi|336254732|ref|YP_004597839.1| - 0.041 13.5 0.0 0.1 12.2 0.0 1.7 1 0 0 1 1 1 0 NACHT domain DUF3584 PF12128.3 gi|336254732|ref|YP_004597839.1| - 0.061 10.6 0.1 0.083 10.2 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_16 PF13191.1 gi|336254732|ref|YP_004597839.1| - 0.065 13.2 3.8 0.045 13.7 0.7 2.3 2 1 0 2 2 2 0 AAA ATPase domain MobB PF03205.9 gi|336254732|ref|YP_004597839.1| - 0.088 12.5 0.2 0.39 10.4 0.1 2.2 1 1 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.1 gi|336254732|ref|YP_004597839.1| - 0.088 12.6 1.8 0.55 10.0 1.2 2.5 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|336254732|ref|YP_004597839.1| - 0.12 11.5 0.0 0.21 10.7 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_5 PF07728.9 gi|336254732|ref|YP_004597839.1| - 0.12 12.0 0.0 0.33 10.6 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_17 PF13207.1 gi|336254732|ref|YP_004597839.1| - 0.16 12.7 0.6 0.51 11.1 0.4 2.1 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|336254732|ref|YP_004597839.1| - 0.17 10.7 0.0 0.26 10.1 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_14 PF13173.1 gi|336254732|ref|YP_004597839.1| - 0.17 11.7 0.0 0.36 10.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.1 gi|336254732|ref|YP_004597839.1| - 0.24 10.3 0.0 7.6 5.4 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain Peripla_BP_2 PF01497.13 gi|336254733|ref|YP_004597840.1| - 1.4e-16 60.3 0.0 2.3e-16 59.6 0.0 1.3 1 0 0 1 1 1 1 Periplasmic binding protein GatB_N PF02934.10 gi|336254734|ref|YP_004597841.1| - 1.6e-72 243.8 0.0 2.4e-72 243.2 0.0 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|336254734|ref|YP_004597841.1| - 2.2e-25 89.0 0.0 4.7e-25 88.0 0.0 1.6 1 0 0 1 1 1 1 GatB domain GAD PF02938.9 gi|336254734|ref|YP_004597841.1| - 1.5e-14 53.9 0.0 2.7e-14 53.0 0.0 1.5 1 0 0 1 1 1 1 GAD domain YqeY PF09424.5 gi|336254734|ref|YP_004597841.1| - 0.00058 19.7 0.3 0.0015 18.3 0.2 1.7 1 0 0 1 1 1 1 Yqey-like protein AsnC_trans_reg PF01037.16 gi|336254736|ref|YP_004597843.1| - 6e-11 41.9 0.5 1e-10 41.1 0.3 1.4 1 0 0 1 1 1 1 AsnC family HTH_24 PF13412.1 gi|336254736|ref|YP_004597843.1| - 1.6e-09 36.9 0.1 2.9e-09 36.1 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|336254736|ref|YP_004597843.1| - 2.5e-06 26.9 0.0 4.7e-06 26.0 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|336254736|ref|YP_004597843.1| - 3.2e-05 23.6 0.0 9.9e-05 22.0 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|336254736|ref|YP_004597843.1| - 0.00069 19.2 0.0 0.0011 18.5 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|336254736|ref|YP_004597843.1| - 0.0017 18.0 0.2 0.0036 16.9 0.0 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|336254736|ref|YP_004597843.1| - 0.0049 17.1 0.0 0.015 15.6 0.0 1.8 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|336254736|ref|YP_004597843.1| - 0.005 16.4 0.0 0.012 15.2 0.0 1.7 2 0 0 2 2 2 1 MarR family Nfu_N PF08712.6 gi|336254736|ref|YP_004597843.1| - 0.029 13.9 0.1 0.058 13.0 0.0 1.5 1 1 0 1 1 1 0 Scaffold protein Nfu/NifU N terminal DUF2250 PF10007.4 gi|336254736|ref|YP_004597843.1| - 0.055 13.3 0.0 0.11 12.3 0.0 1.6 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) GYD PF08734.6 gi|336254736|ref|YP_004597843.1| - 0.064 12.9 0.0 0.11 12.2 0.0 1.4 1 0 0 1 1 1 0 GYD domain HTH_AsnC-type PF13404.1 gi|336254736|ref|YP_004597843.1| - 0.07 12.6 0.0 0.17 11.4 0.0 1.7 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Polyhedrin PF00738.13 gi|336254736|ref|YP_004597843.1| - 0.1 11.6 0.0 0.14 11.2 0.0 1.2 1 0 0 1 1 1 0 Polyhedrin B-block_TFIIIC PF04182.7 gi|336254736|ref|YP_004597843.1| - 0.15 11.8 0.0 0.27 11.1 0.0 1.3 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC EamA PF00892.15 gi|336254737|ref|YP_004597844.1| - 3.6e-33 114.2 29.7 4.8e-17 62.1 5.7 2.2 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|336254737|ref|YP_004597844.1| - 0.00011 22.3 7.3 0.00011 22.3 5.0 3.4 1 1 2 4 4 4 1 Multidrug resistance efflux transporter UPF0233 PF06781.7 gi|336254737|ref|YP_004597844.1| - 0.8 9.3 5.0 18 5.0 0.1 3.2 3 0 0 3 3 3 0 Uncharacterised protein family (UPF0233) TPT PF03151.11 gi|336254737|ref|YP_004597844.1| - 1.3 8.6 21.5 1.5 8.4 9.1 2.6 2 1 0 2 2 2 0 Triose-phosphate Transporter family MFS_1 PF07690.11 gi|336254738|ref|YP_004597845.1| - 5.8e-25 87.7 67.2 1.4e-15 56.8 21.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF2304 PF10066.4 gi|336254738|ref|YP_004597845.1| - 1.2 9.0 6.9 0.18 11.6 0.3 2.7 2 2 0 3 3 3 0 Uncharacterized conserved protein (DUF2304) DUF2376 PF09550.5 gi|336254738|ref|YP_004597845.1| - 2.2 8.5 5.5 30 4.8 0.5 3.0 3 0 0 3 3 3 0 Conserved hypothetical phage protein (DUF2376) SpoU_methylase PF00588.14 gi|336254740|ref|YP_004597847.1| - 4.1e-28 98.0 0.0 5.4e-28 97.6 0.0 1.2 1 0 0 1 1 1 1 SpoU rRNA Methylase family Abhydrolase_6 PF12697.2 gi|336254740|ref|YP_004597847.1| - 0.11 12.3 0.2 0.78 9.5 0.0 2.0 1 1 1 2 2 2 0 Alpha/beta hydrolase family Cdc6_C PF09079.6 gi|336254741|ref|YP_004597848.1| - 2.2e-19 68.9 0.2 7e-19 67.3 0.1 1.9 2 0 0 2 2 2 1 CDC6, C terminal AAA_22 PF13401.1 gi|336254741|ref|YP_004597848.1| - 4.2e-11 43.1 0.2 1.6e-10 41.1 0.0 1.9 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|336254741|ref|YP_004597848.1| - 7.7e-10 39.0 1.4 4.6e-09 36.5 0.9 2.5 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.24 gi|336254741|ref|YP_004597848.1| - 6.8e-05 23.0 0.0 0.00025 21.2 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|336254741|ref|YP_004597848.1| - 0.00014 21.6 0.2 0.0011 18.7 0.2 2.3 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) NB-ARC PF00931.17 gi|336254741|ref|YP_004597848.1| - 0.00032 19.6 0.0 0.00053 18.9 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain AAA_32 PF13654.1 gi|336254741|ref|YP_004597848.1| - 0.00052 18.7 0.3 0.45 9.1 0.3 2.3 2 0 0 2 2 2 2 AAA domain Sigma54_activat PF00158.21 gi|336254741|ref|YP_004597848.1| - 0.00076 18.9 0.2 0.0023 17.4 0.0 1.9 2 0 0 2 2 2 1 Sigma-54 interaction domain DUF815 PF05673.8 gi|336254741|ref|YP_004597848.1| - 0.0011 17.9 0.0 0.0021 17.0 0.0 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF815) PhoH PF02562.11 gi|336254741|ref|YP_004597848.1| - 0.0011 18.2 0.0 0.15 11.2 0.0 2.3 2 0 0 2 2 2 1 PhoH-like protein ATP-synt_ab PF00006.20 gi|336254741|ref|YP_004597848.1| - 0.0019 17.7 0.0 0.0032 16.9 0.0 1.4 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain PIF1 PF05970.9 gi|336254741|ref|YP_004597848.1| - 0.0046 15.9 0.1 0.021 13.7 0.0 2.0 2 0 0 2 2 2 1 PIF1-like helicase DUF87 PF01935.12 gi|336254741|ref|YP_004597848.1| - 0.012 15.4 3.0 0.056 13.2 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function DUF87 PCP_red PF08369.5 gi|336254741|ref|YP_004597848.1| - 0.037 13.8 0.2 0.1 12.4 0.2 1.8 1 0 0 1 1 1 0 Proto-chlorophyllide reductase 57 kD subunit Arf PF00025.16 gi|336254741|ref|YP_004597848.1| - 0.066 12.4 0.0 0.12 11.6 0.0 1.3 1 0 0 1 1 1 0 ADP-ribosylation factor family IstB_IS21 PF01695.12 gi|336254741|ref|YP_004597848.1| - 0.094 12.1 0.0 2.2 7.6 0.0 2.5 2 0 0 2 2 2 0 IstB-like ATP binding protein Sigma54_activ_2 PF14532.1 gi|336254741|ref|YP_004597848.1| - 0.12 12.4 0.0 0.41 10.6 0.0 1.9 2 0 0 2 2 2 0 Sigma-54 interaction domain RNA_helicase PF00910.17 gi|336254741|ref|YP_004597848.1| - 0.15 12.2 0.0 0.56 10.4 0.0 2.0 2 0 0 2 2 2 0 RNA helicase Phage-MuB_C PF09077.6 gi|336254741|ref|YP_004597848.1| - 0.16 11.6 1.2 1.1 8.9 0.1 2.4 2 0 0 2 2 2 0 Mu B transposition protein, C terminal DEAD PF00270.24 gi|336254741|ref|YP_004597848.1| - 0.17 11.3 1.0 3.5 7.0 0.2 2.4 1 1 0 2 2 2 0 DEAD/DEAH box helicase Pterin_bind PF00809.17 gi|336254742|ref|YP_004597849.1| - 7e-30 103.9 0.0 1.1e-29 103.3 0.0 1.3 1 0 0 1 1 1 1 Pterin binding enzyme MAF_flag10 PF01973.13 gi|336254743|ref|YP_004597850.1| - 4.8e-28 97.7 0.0 6.1e-28 97.4 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF115 TrkA_N PF02254.13 gi|336254743|ref|YP_004597850.1| - 0.043 13.8 0.1 0.15 12.0 0.0 1.9 1 1 1 2 2 2 0 TrkA-N domain Polysacc_deac_1 PF01522.16 gi|336254743|ref|YP_004597850.1| - 0.052 13.1 0.0 0.089 12.4 0.0 1.6 1 1 0 1 1 1 0 Polysaccharide deacetylase SIR2_2 PF13289.1 gi|336254743|ref|YP_004597850.1| - 0.16 11.8 0.0 0.26 11.1 0.0 1.3 1 0 0 1 1 1 0 SIR2-like domain DZR PF12773.2 gi|336254744|ref|YP_004597851.1| - 0.0031 17.2 0.6 0.0036 17.0 0.4 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|336254744|ref|YP_004597851.1| - 0.024 14.1 4.4 0.034 13.6 3.1 1.2 1 0 0 1 1 1 0 zinc-ribbon domain NRDD PF13597.1 gi|336254744|ref|YP_004597851.1| - 0.052 11.6 0.9 0.05 11.6 0.7 1.1 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase Cript PF10235.4 gi|336254744|ref|YP_004597851.1| - 0.074 13.4 1.1 0.096 13.0 0.8 1.2 1 0 0 1 1 1 0 Microtubule-associated protein CRIPT Cys_rich_CPXG PF14255.1 gi|336254744|ref|YP_004597851.1| - 0.078 12.8 2.5 1.6 8.6 0.0 2.2 2 0 0 2 2 2 0 Cysteine-rich CPXCG zf-FPG_IleRS PF06827.9 gi|336254744|ref|YP_004597851.1| - 0.29 10.8 0.5 0.29 10.8 0.4 2.4 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS DUF2688 PF10892.3 gi|336254744|ref|YP_004597851.1| - 0.36 10.5 3.7 0.63 9.7 2.6 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2688) zf-C3HC4_3 PF13920.1 gi|336254744|ref|YP_004597851.1| - 0.53 9.9 5.3 0.89 9.2 3.7 1.3 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-ribbon_3 PF13248.1 gi|336254744|ref|YP_004597851.1| - 0.54 9.5 3.6 1.3 8.3 2.5 1.6 1 1 0 1 1 1 0 zinc-ribbon domain HypA PF01155.14 gi|336254744|ref|YP_004597851.1| - 0.58 9.8 4.7 0.7 9.6 3.2 1.3 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DUF2072 PF09845.4 gi|336254744|ref|YP_004597851.1| - 0.76 9.7 3.7 0.84 9.5 1.7 1.6 2 0 0 2 2 2 0 Zn-ribbon containing protein (DUF2072) Ribosomal_L37e PF01907.14 gi|336254744|ref|YP_004597851.1| - 0.78 9.5 4.1 0.23 11.2 0.7 1.7 2 0 0 2 2 2 0 Ribosomal protein L37e OrfB_Zn_ribbon PF07282.6 gi|336254744|ref|YP_004597851.1| - 1.3 8.7 5.1 1.5 8.5 3.2 1.4 1 1 0 1 1 1 0 Putative transposase DNA-binding domain Lar_restr_allev PF14354.1 gi|336254744|ref|YP_004597851.1| - 1.8 8.9 6.2 1.9 8.8 1.0 2.2 1 1 1 2 2 2 0 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.5 gi|336254744|ref|YP_004597851.1| - 2.6 8.0 8.2 7.6 6.5 0.3 2.3 1 1 1 2 2 2 0 Zinc ribbon domain TFIIS_C PF01096.13 gi|336254744|ref|YP_004597851.1| - 3.5 7.3 8.5 4.8 6.9 0.1 2.9 2 1 1 3 3 3 0 Transcription factor S-II (TFIIS) zf-ISL3 PF14690.1 gi|336254744|ref|YP_004597851.1| - 9.7 6.3 7.2 4.9 7.2 0.8 2.3 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Bac_luciferase PF00296.15 gi|336254745|ref|YP_004597852.1| - 2e-73 247.2 10.9 2.3e-73 247.0 7.6 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase SQS_PSY PF00494.14 gi|336254745|ref|YP_004597852.1| - 0.024 13.9 0.2 0.086 12.1 0.0 1.8 2 0 0 2 2 2 0 Squalene/phytoene synthase Tubulin PF00091.20 gi|336254747|ref|YP_004597854.1| - 2.3e-24 86.4 0.1 5.1e-24 85.3 0.1 1.5 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain SBP_bac_5 PF00496.17 gi|336254748|ref|YP_004597855.1| - 4.5e-42 144.2 0.0 1.9e-37 129.0 0.0 2.1 2 0 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.4 gi|336254748|ref|YP_004597855.1| - 0.29 11.2 2.6 0.66 10.1 1.8 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence PAP2 PF01569.16 gi|336254749|ref|YP_004597856.1| - 3.5e-12 46.1 14.3 1.3e-11 44.2 9.9 2.2 1 1 0 1 1 1 1 PAP2 superfamily PAP2_3 PF14378.1 gi|336254749|ref|YP_004597856.1| - 8.6e-10 38.4 5.1 8.6e-10 38.4 3.5 1.6 2 0 0 2 2 2 1 PAP2 superfamily PAP2_C PF14360.1 gi|336254749|ref|YP_004597856.1| - 2.7 8.3 8.7 0.24 11.6 1.8 2.4 2 1 0 2 2 2 0 PAP2 superfamily C-terminal FAD_binding_7 PF03441.9 gi|336254750|ref|YP_004597857.1| - 3e-96 321.8 2.4 3.8e-96 321.5 1.6 1.1 1 0 0 1 1 1 1 FAD binding domain of DNA photolyase DNA_photolyase PF00875.13 gi|336254750|ref|YP_004597857.1| - 8.4e-41 139.4 0.4 1.4e-39 135.5 0.0 2.2 2 0 0 2 2 2 1 DNA photolyase Usp PF00582.21 gi|336254750|ref|YP_004597857.1| - 0.081 13.1 0.5 0.61 10.2 0.1 2.4 2 0 0 2 2 2 0 Universal stress protein family Glyco_trans_1_3 PF13528.1 gi|336254750|ref|YP_004597857.1| - 0.19 10.9 0.0 0.36 9.9 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 1 CarboxypepD_reg PF13620.1 gi|336254752|ref|YP_004597859.1| - 7e-06 26.0 0.1 9.6e-06 25.5 0.1 1.2 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain DUF4198 PF10670.4 gi|336254752|ref|YP_004597859.1| - 7.9e-05 22.7 0.0 9.9e-05 22.4 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4198) Dioxygenase_C PF00775.16 gi|336254752|ref|YP_004597859.1| - 0.14 11.3 0.2 0.39 9.9 0.1 1.6 1 1 1 2 2 2 0 Dioxygenase GFO_IDH_MocA PF01408.17 gi|336254753|ref|YP_004597860.1| - 6.6e-25 87.9 0.0 1e-24 87.3 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|336254753|ref|YP_004597860.1| - 5e-11 42.4 0.0 9.3e-11 41.5 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain 2-Hacid_dh_C PF02826.14 gi|336254753|ref|YP_004597860.1| - 2.7e-05 23.4 0.0 4.6e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|336254753|ref|YP_004597860.1| - 0.00012 22.3 0.0 0.00033 21.0 0.0 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|336254753|ref|YP_004597860.1| - 0.0088 15.8 0.0 0.016 15.0 0.0 1.6 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.7 gi|336254753|ref|YP_004597860.1| - 0.011 15.1 0.0 0.019 14.3 0.0 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain ox_reductase_C PF08635.5 gi|336254753|ref|YP_004597860.1| - 0.082 12.3 0.0 0.15 11.4 0.0 1.4 1 0 0 1 1 1 0 Putative oxidoreductase C terminal Semialdhyde_dh PF01118.19 gi|336254753|ref|YP_004597860.1| - 0.11 12.8 0.0 0.26 11.6 0.0 1.7 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain ABC_tran PF00005.22 gi|336254754|ref|YP_004597861.1| - 2.7e-33 115.1 0.0 4.7e-33 114.3 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|336254754|ref|YP_004597861.1| - 5.1e-09 36.4 0.0 1.9e-05 24.7 0.0 2.2 1 1 1 2 2 2 2 AAA domain TOBE PF03459.12 gi|336254754|ref|YP_004597861.1| - 1.1e-05 25.4 0.1 0.066 13.3 0.0 3.8 3 1 0 3 3 3 1 TOBE domain SMC_N PF02463.14 gi|336254754|ref|YP_004597861.1| - 9.4e-05 21.7 0.1 0.00047 19.4 0.1 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain TOBE_2 PF08402.5 gi|336254754|ref|YP_004597861.1| - 0.00031 20.6 0.1 0.0097 15.8 0.0 2.9 1 1 1 2 2 2 2 TOBE domain AAA_29 PF13555.1 gi|336254754|ref|YP_004597861.1| - 0.0015 17.9 0.0 0.0034 16.8 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|336254754|ref|YP_004597861.1| - 0.0023 17.1 0.0 0.0037 16.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|336254754|ref|YP_004597861.1| - 0.0031 17.5 0.1 0.0074 16.2 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.1 gi|336254754|ref|YP_004597861.1| - 0.0034 16.5 0.0 0.022 13.8 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|336254754|ref|YP_004597861.1| - 0.0071 16.4 0.6 0.022 14.8 0.4 1.9 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|336254754|ref|YP_004597861.1| - 0.0079 16.0 0.3 0.022 14.6 0.2 1.8 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|336254754|ref|YP_004597861.1| - 0.012 15.1 0.0 0.032 13.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.10 gi|336254754|ref|YP_004597861.1| - 0.013 14.2 0.0 0.017 13.8 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_25 PF13481.1 gi|336254754|ref|YP_004597861.1| - 0.023 14.1 2.4 0.26 10.6 0.2 2.7 1 1 1 2 2 2 0 AAA domain Zeta_toxin PF06414.7 gi|336254754|ref|YP_004597861.1| - 0.023 13.7 0.0 0.065 12.3 0.0 1.7 2 0 0 2 2 2 0 Zeta toxin AAA_5 PF07728.9 gi|336254754|ref|YP_004597861.1| - 0.028 14.1 0.0 0.077 12.7 0.0 1.7 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) NB-ARC PF00931.17 gi|336254754|ref|YP_004597861.1| - 0.036 12.9 0.0 0.057 12.2 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain RNA_helicase PF00910.17 gi|336254754|ref|YP_004597861.1| - 0.039 14.1 0.0 0.089 12.9 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_17 PF13207.1 gi|336254754|ref|YP_004597861.1| - 0.047 14.4 0.8 0.19 12.5 0.5 2.2 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|336254754|ref|YP_004597861.1| - 0.054 13.4 0.0 0.15 11.9 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA PF00004.24 gi|336254754|ref|YP_004597861.1| - 0.066 13.4 0.6 0.14 12.3 0.4 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) BPD_transp_1 PF00528.17 gi|336254755|ref|YP_004597862.1| - 4.4e-11 42.6 20.9 4.4e-11 42.6 14.5 2.5 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|336254756|ref|YP_004597863.1| - 5e-16 58.7 21.6 5e-16 58.7 14.9 2.9 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component ThiW PF09512.5 gi|336254756|ref|YP_004597863.1| - 0.2 11.5 12.1 0.058 13.2 3.9 2.5 2 0 0 2 2 2 0 Thiamine-precursor transporter protein (ThiW) TraP PF07296.6 gi|336254756|ref|YP_004597863.1| - 0.25 10.2 3.1 1.1 8.2 0.2 2.2 2 0 0 2 2 2 0 TraP protein SBP_bac_8 PF13416.1 gi|336254757|ref|YP_004597864.1| - 7e-20 71.9 0.4 1.1e-19 71.2 0.3 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|336254757|ref|YP_004597864.1| - 4e-10 39.9 0.6 1.4e-09 38.1 0.4 1.8 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein Regulator_TrmB PF11495.3 gi|336254758|ref|YP_004597865.1| - 1.7e-68 230.0 0.6 2.7e-68 229.4 0.3 1.4 2 0 0 2 2 2 1 Archaeal transcriptional regulator TrmB TrmB PF01978.14 gi|336254758|ref|YP_004597865.1| - 1.2e-20 72.9 0.0 5.2e-20 70.9 0.0 2.0 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|336254758|ref|YP_004597865.1| - 4.2e-06 26.4 0.1 2.1e-05 24.2 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|336254758|ref|YP_004597865.1| - 7.1e-06 25.5 0.1 2.2e-05 24.0 0.0 1.8 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|336254758|ref|YP_004597865.1| - 0.00011 21.7 0.3 0.00029 20.3 0.0 1.9 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|336254758|ref|YP_004597865.1| - 0.00028 20.2 0.1 0.0033 16.7 0.0 2.5 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|336254758|ref|YP_004597865.1| - 0.00036 20.1 0.0 0.0024 17.5 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_CodY PF08222.6 gi|336254758|ref|YP_004597865.1| - 0.0018 17.5 0.0 0.0063 15.8 0.0 2.0 1 0 0 1 1 1 1 CodY helix-turn-helix domain Rrf2 PF02082.15 gi|336254758|ref|YP_004597865.1| - 0.004 17.2 0.0 0.0085 16.1 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator DUF2250 PF10007.4 gi|336254758|ref|YP_004597865.1| - 0.0096 15.8 0.0 0.028 14.2 0.0 1.7 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) MarR PF01047.17 gi|336254758|ref|YP_004597865.1| - 0.059 13.0 0.0 0.15 11.8 0.0 1.6 1 0 0 1 1 1 0 MarR family PqqD PF05402.7 gi|336254758|ref|YP_004597865.1| - 0.11 12.5 0.4 4.6 7.3 0.1 2.9 2 0 0 2 2 2 0 Coenzyme PQQ synthesis protein D (PqqD) HTH_9 PF08221.6 gi|336254758|ref|YP_004597865.1| - 0.11 12.3 0.0 0.26 11.1 0.0 1.5 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain MS_channel PF00924.13 gi|336254759|ref|YP_004597866.1| - 1.7e-35 122.2 0.4 2.4e-35 121.7 0.3 1.1 1 0 0 1 1 1 1 Mechanosensitive ion channel TM_helix PF05552.7 gi|336254759|ref|YP_004597866.1| - 0.00055 19.5 0.2 0.00055 19.5 0.2 1.9 2 0 0 2 2 2 1 Conserved TM helix Usp PF00582.21 gi|336254760|ref|YP_004597867.1| - 1.2e-31 109.7 1.5 1.4e-31 109.5 1.0 1.0 1 0 0 1 1 1 1 Universal stress protein family Usp PF00582.21 gi|336254761|ref|YP_004597868.1| - 9.1e-12 45.3 1.2 1.7e-11 44.4 0.8 1.4 1 1 0 1 1 1 1 Universal stress protein family DUF3582 PF12122.3 gi|336254761|ref|YP_004597868.1| - 0.11 12.4 0.0 0.19 11.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3582) zf-FPG_IleRS PF06827.9 gi|336254762|ref|YP_004597869.1| - 0.063 12.9 3.8 0.57 9.8 0.4 2.3 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS DNA_RNApol_7kD PF03604.8 gi|336254762|ref|YP_004597869.1| - 0.077 12.4 0.5 0.11 11.9 0.3 1.3 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-RanBP PF00641.13 gi|336254762|ref|YP_004597869.1| - 2 7.6 4.8 8.1 5.6 3.3 1.9 1 1 0 1 1 1 0 Zn-finger in Ran binding protein and others Prim_Zn_Ribbon PF08273.7 gi|336254762|ref|YP_004597869.1| - 2.8 8.1 6.0 1.3 9.1 0.7 2.2 1 1 1 2 2 2 0 Zinc-binding domain of primase-helicase zf-ribbon_3 PF13248.1 gi|336254762|ref|YP_004597869.1| - 6.6 6.0 6.4 28 4.1 0.6 2.2 1 1 1 2 2 2 0 zinc-ribbon domain NifT PF06988.6 gi|336254763|ref|YP_004597870.1| - 0.081 12.3 0.0 0.14 11.6 0.0 1.4 1 0 0 1 1 1 0 NifT/FixU protein Aminotran_5 PF00266.14 gi|336254764|ref|YP_004597871.1| - 5.9e-32 110.8 0.0 7.6e-32 110.4 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|336254764|ref|YP_004597871.1| - 0.00014 20.2 0.0 0.0002 19.7 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|336254764|ref|YP_004597871.1| - 0.0037 16.3 0.7 0.0058 15.7 0.5 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family B12-binding PF02310.14 gi|336254764|ref|YP_004597871.1| - 0.034 14.0 0.1 0.092 12.6 0.1 1.7 1 0 0 1 1 1 0 B12 binding domain DUF457 PF04307.9 gi|336254765|ref|YP_004597872.1| - 3.3e-12 46.0 31.3 8.8e-11 41.3 21.7 2.7 1 1 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) DUF2238 PF09997.4 gi|336254766|ref|YP_004597873.1| - 0.34 10.3 5.3 0.055 12.8 1.0 1.7 2 0 0 2 2 2 0 Predicted membrane protein (DUF2238) TMEM220 PF15071.1 gi|336254766|ref|YP_004597873.1| - 3.3 8.2 0.0 3.3 8.2 0.0 3.1 2 1 0 3 3 3 0 Transmembrane family 220, helix DUF2238 PF09997.4 gi|336254767|ref|YP_004597874.1| - 0.0036 16.6 2.8 0.0077 15.6 2.0 1.8 1 1 0 1 1 1 1 Predicted membrane protein (DUF2238) Chlorosome_CsmC PF11098.3 gi|336254767|ref|YP_004597874.1| - 0.043 13.5 0.4 0.098 12.3 0.3 1.5 1 0 0 1 1 1 0 Chlorosome envelope protein C Dodecin PF07311.7 gi|336254768|ref|YP_004597875.1| - 1.4e-23 82.7 0.1 1.5e-23 82.6 0.1 1.0 1 0 0 1 1 1 1 Dodecin Fe-S_biosyn PF01521.15 gi|336254769|ref|YP_004597876.1| - 3.2e-18 65.6 0.0 3.7e-18 65.4 0.0 1.0 1 0 0 1 1 1 1 Iron-sulphur cluster biosynthesis MCPsignal PF00015.16 gi|336254771|ref|YP_004597878.1| - 2.9e-50 170.7 54.8 2.7e-46 157.7 21.6 2.9 1 1 2 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain PAS PF00989.19 gi|336254771|ref|YP_004597878.1| - 4.1e-13 49.1 0.1 1.4e-12 47.3 0.1 1.9 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.1 gi|336254771|ref|YP_004597878.1| - 1.1e-12 48.2 1.4 2.2e-12 47.2 0.0 2.3 2 1 0 2 2 1 1 PAS domain Laminin_II PF06009.7 gi|336254771|ref|YP_004597878.1| - 1.2e-06 28.2 36.3 7.7e-05 22.4 2.6 4.6 3 2 2 5 5 4 4 Laminin Domain II PAS_4 PF08448.5 gi|336254771|ref|YP_004597878.1| - 2.6e-06 27.4 2.6 3.2e-05 23.9 1.8 3.0 1 1 0 1 1 1 1 PAS fold DUF948 PF06103.6 gi|336254771|ref|YP_004597878.1| - 7.1e-06 25.7 28.4 0.011 15.6 0.9 5.5 4 2 2 6 6 6 3 Bacterial protein of unknown function (DUF948) PAS_8 PF13188.1 gi|336254771|ref|YP_004597878.1| - 1.4e-05 24.7 0.0 5.9e-05 22.7 0.0 2.1 1 0 0 1 1 1 1 PAS domain DUF1664 PF07889.7 gi|336254771|ref|YP_004597878.1| - 7.9e-05 22.4 26.9 0.0031 17.2 2.5 4.9 1 1 4 5 5 5 2 Protein of unknown function (DUF1664) AAA_13 PF13166.1 gi|336254771|ref|YP_004597878.1| - 0.00016 20.3 27.9 0.0014 17.2 7.7 2.1 1 1 1 2 2 2 2 AAA domain BLOC1_2 PF10046.4 gi|336254771|ref|YP_004597878.1| - 0.0011 19.0 30.7 0.34 11.0 1.0 5.3 2 2 2 5 5 5 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 Sec5 PF15469.1 gi|336254771|ref|YP_004597878.1| - 0.0073 16.0 2.5 0.0073 16.0 1.7 2.4 1 1 1 3 3 3 1 Exocyst complex component Sec5 Spc7 PF08317.6 gi|336254771|ref|YP_004597878.1| - 0.013 14.1 26.8 0.0088 14.7 5.4 3.2 2 1 2 4 4 4 0 Spc7 kinetochore protein Seryl_tRNA_N PF02403.17 gi|336254771|ref|YP_004597878.1| - 0.022 14.7 25.3 0.46 10.5 2.2 4.4 2 2 2 4 4 4 0 Seryl-tRNA synthetase N-terminal domain PAS_3 PF08447.6 gi|336254771|ref|YP_004597878.1| - 0.026 14.5 0.3 0.8 9.8 0.2 2.5 1 1 0 1 1 1 0 PAS fold PAS_7 PF12860.2 gi|336254771|ref|YP_004597878.1| - 0.028 14.4 8.5 0.03 14.3 0.2 4.0 3 1 1 4 4 4 0 PAS fold AATF-Che1 PF13339.1 gi|336254771|ref|YP_004597878.1| - 0.063 13.4 13.7 0.82 9.8 1.4 3.8 1 1 2 3 3 3 0 Apoptosis antagonizing transcription factor IFT57 PF10498.4 gi|336254771|ref|YP_004597878.1| - 0.065 11.9 22.5 0.13 10.9 0.8 3.6 2 2 1 3 3 3 0 Intra-flagellar transport protein 57 ING PF12998.2 gi|336254771|ref|YP_004597878.1| - 0.097 12.9 16.2 0.4 10.9 3.3 3.6 1 1 1 2 2 2 0 Inhibitor of growth proteins N-terminal histone-binding Atg14 PF10186.4 gi|336254771|ref|YP_004597878.1| - 0.1 11.5 11.7 0.05 12.5 1.1 2.8 2 1 0 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 FH2 PF02181.18 gi|336254771|ref|YP_004597878.1| - 0.11 11.3 13.8 1.4 7.6 1.5 3.7 3 2 0 3 3 3 0 Formin Homology 2 Domain Reo_sigmaC PF04582.7 gi|336254771|ref|YP_004597878.1| - 0.12 11.5 23.9 0.22 10.6 6.3 2.8 1 1 2 3 3 3 0 Reovirus sigma C capsid protein RPW8 PF05659.6 gi|336254771|ref|YP_004597878.1| - 0.13 11.8 1.8 0.33 10.4 0.1 2.4 2 0 0 2 2 2 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 Fib_alpha PF08702.5 gi|336254771|ref|YP_004597878.1| - 0.16 12.1 19.7 3 7.9 1.9 4.9 3 2 3 6 6 6 0 Fibrinogen alpha/beta chain family Laminin_I PF06008.9 gi|336254771|ref|YP_004597878.1| - 0.47 9.7 32.6 1.2 8.4 3.4 4.2 2 2 1 3 3 3 0 Laminin Domain I Syntaxin-6_N PF09177.6 gi|336254771|ref|YP_004597878.1| - 0.7 10.3 28.8 2 8.8 2.5 4.9 3 2 3 6 6 5 0 Syntaxin 6, N-terminal DUF3584 PF12128.3 gi|336254771|ref|YP_004597878.1| - 0.79 6.9 38.1 1.1 6.4 11.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3584) Syntaxin PF00804.20 gi|336254771|ref|YP_004597878.1| - 0.85 9.8 33.8 0.063 13.4 0.7 4.7 1 1 2 3 3 2 0 Syntaxin CorA PF01544.13 gi|336254771|ref|YP_004597878.1| - 1.6 7.7 20.1 0.35 9.8 3.8 3.0 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein Katanin_con80 PF13925.1 gi|336254771|ref|YP_004597878.1| - 1.9 8.2 7.0 13 5.4 0.0 3.9 4 1 0 5 5 4 0 con80 domain of Katanin TPR_MLP1_2 PF07926.7 gi|336254771|ref|YP_004597878.1| - 2 8.1 28.8 3.2 7.5 4.3 3.4 2 1 2 4 4 4 0 TPR/MLP1/MLP2-like protein Spectrin PF00435.16 gi|336254771|ref|YP_004597878.1| - 2.2 8.6 27.6 1.2 9.4 4.7 5.1 1 1 4 5 5 5 0 Spectrin repeat IncA PF04156.9 gi|336254771|ref|YP_004597878.1| - 2.2 7.8 30.1 1.5 8.3 5.2 3.3 1 1 1 2 2 2 0 IncA protein Bacillus_HBL PF05791.6 gi|336254771|ref|YP_004597878.1| - 2.3 7.5 10.2 0.18 11.1 0.2 2.9 2 1 1 3 3 3 0 Bacillus haemolytic enterotoxin (HBL) Hemerythrin PF01814.18 gi|336254771|ref|YP_004597878.1| - 2.5 8.2 28.6 45 4.2 0.2 5.1 1 1 2 3 3 3 0 Hemerythrin HHE cation binding domain V_ATPase_I PF01496.14 gi|336254771|ref|YP_004597878.1| - 5.4 4.7 19.1 1.1 6.9 3.7 2.3 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family COG2 PF06148.6 gi|336254771|ref|YP_004597878.1| - 8.1 6.3 24.1 10 6.0 0.6 5.2 2 2 2 4 4 4 0 COG (conserved oligomeric Golgi) complex component, COG2 Hormone_1 PF00103.15 gi|336254771|ref|YP_004597878.1| - 8.3 5.6 6.8 37 3.5 0.2 3.3 3 1 0 3 3 3 0 Somatotropin hormone family Mnd1 PF03962.10 gi|336254771|ref|YP_004597878.1| - 8.7 5.9 28.6 1.7 8.2 4.6 3.6 2 1 1 3 3 3 0 Mnd1 family LOH1CR12 PF10158.4 gi|336254771|ref|YP_004597878.1| - 9.1 6.0 14.0 7.1 6.4 2.3 3.5 2 2 1 3 3 3 0 Tumour suppressor protein Histidinol_dh PF00815.15 gi|336254772|ref|YP_004597879.1| - 1.2e-149 498.4 5.1 1.4e-149 498.2 3.5 1.0 1 0 0 1 1 1 1 Histidinol dehydrogenase AIF-MLS PF14962.1 gi|336254772|ref|YP_004597879.1| - 7.5 6.1 16.3 0.099 12.2 5.8 1.9 2 0 0 2 2 2 0 Mitochondria Localisation Sequence DUF4233 PF14017.1 gi|336254773|ref|YP_004597880.1| - 0.11 12.4 6.0 0.13 12.2 4.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4233) Trp_oprn_chp PF09534.5 gi|336254773|ref|YP_004597880.1| - 0.4 10.2 6.4 0.43 10.1 4.4 1.1 1 0 0 1 1 1 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) DUF4032 PF13224.1 gi|336254776|ref|YP_004597883.1| - 0.0061 16.2 0.1 0.0079 15.9 0.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4032) BssS PF13991.1 gi|336254776|ref|YP_004597883.1| - 0.013 15.1 0.1 0.023 14.4 0.0 1.4 1 0 0 1 1 1 0 BssS protein family DUF892 PF05974.7 gi|336254777|ref|YP_004597884.1| - 6.2e-45 152.8 11.0 7.5e-45 152.5 7.6 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF892) Ferritin PF00210.19 gi|336254777|ref|YP_004597884.1| - 0.0012 18.5 13.7 0.0028 17.4 9.5 1.6 1 1 0 1 1 1 1 Ferritin-like domain FlgN PF05130.7 gi|336254777|ref|YP_004597884.1| - 0.0055 16.9 5.5 0.36 11.0 0.3 2.3 2 0 0 2 2 2 2 FlgN protein RPT PF13446.1 gi|336254777|ref|YP_004597884.1| - 0.025 13.9 0.6 0.065 12.6 0.0 2.0 2 0 0 2 2 2 0 A repeated domain in UCH-protein DUF2277 PF10041.4 gi|336254777|ref|YP_004597884.1| - 0.032 14.1 0.0 0.075 13.0 0.0 1.6 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2277) DUF2383 PF09537.5 gi|336254777|ref|YP_004597884.1| - 0.083 13.1 7.8 0.096 12.9 0.3 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF2383) RhoGEF PF00621.15 gi|336254777|ref|YP_004597884.1| - 0.1 12.4 2.2 0.09 12.6 0.2 1.9 2 1 0 2 2 2 0 RhoGEF domain Copine PF07002.11 gi|336254777|ref|YP_004597884.1| - 0.14 11.8 0.0 0.45 10.2 0.0 1.7 1 1 0 1 1 1 0 Copine HrpJ PF07201.6 gi|336254777|ref|YP_004597884.1| - 0.6 10.1 5.8 0.66 9.9 0.1 2.5 2 1 1 3 3 3 0 HrpJ-like domain Vir_act_alpha_C PF10400.4 gi|336254777|ref|YP_004597884.1| - 0.67 10.3 7.0 1.9 8.9 0.4 3.0 2 1 0 3 3 3 0 Virulence activator alpha C-term GTPase_Cys_C PF12631.2 gi|336254777|ref|YP_004597884.1| - 3.8 7.9 5.7 2.1 8.8 0.2 2.6 2 1 0 2 2 2 0 Catalytic cysteine-containing C-terminus of GTPase, MnmE Acetyltransf_1 PF00583.19 gi|336254779|ref|YP_004597886.1| - 8.4e-18 64.1 0.0 1.2e-17 63.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|336254779|ref|YP_004597886.1| - 7.1e-13 48.7 0.0 9.3e-13 48.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|336254779|ref|YP_004597886.1| - 9.4e-10 38.5 0.0 1.7e-09 37.7 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|336254779|ref|YP_004597886.1| - 9.6e-10 38.4 0.0 1.5e-09 37.8 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|336254779|ref|YP_004597886.1| - 4.8e-08 32.6 0.0 1.3e-07 31.2 0.0 1.8 2 0 0 2 2 2 1 FR47-like protein Acetyltransf_4 PF13420.1 gi|336254779|ref|YP_004597886.1| - 8e-05 22.6 0.0 8.7e-05 22.5 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|336254779|ref|YP_004597886.1| - 0.001 18.9 0.0 0.0014 18.5 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|336254779|ref|YP_004597886.1| - 0.0038 17.3 0.0 0.005 17.0 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Reductase_C PF14759.1 gi|336254781|ref|YP_004597888.1| - 0.086 13.1 1.9 0.19 12.0 0.3 1.9 2 0 0 2 2 2 0 Reductase C-terminal NUDIX PF00293.23 gi|336254782|ref|YP_004597889.1| - 5.7e-16 58.3 0.8 5.7e-16 58.3 0.5 1.5 2 0 0 2 2 2 1 NUDIX domain Rhodanese PF00581.15 gi|336254783|ref|YP_004597890.1| - 1.1e-14 54.7 0.0 1.3e-14 54.5 0.0 1.1 1 0 0 1 1 1 1 Rhodanese-like domain SUI1 PF01253.17 gi|336254784|ref|YP_004597891.1| - 1.1e-23 82.7 0.0 1.3e-23 82.5 0.0 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 Img2 PF05046.9 gi|336254784|ref|YP_004597891.1| - 0.014 15.6 0.0 0.018 15.2 0.0 1.4 1 1 0 1 1 1 0 Mitochondrial large subunit ribosomal protein (Img2) DTW PF03942.10 gi|336254784|ref|YP_004597891.1| - 0.055 12.6 0.5 0.068 12.3 0.4 1.1 1 0 0 1 1 1 0 DTW domain Transglut_core PF01841.14 gi|336254785|ref|YP_004597892.1| - 3.9e-29 101.1 0.0 9.3e-29 99.9 0.0 1.7 1 0 0 1 1 1 1 Transglutaminase-like superfamily DUF4129 PF13559.1 gi|336254785|ref|YP_004597892.1| - 8.3e-06 25.6 8.2 8.3e-06 25.6 5.7 2.6 3 0 0 3 3 3 1 Domain of unknown function (DUF4129) Transglut_core3 PF13471.1 gi|336254785|ref|YP_004597892.1| - 2e-05 24.3 0.1 0.00012 21.8 0.0 2.2 2 0 0 2 2 2 1 Transglutaminase-like superfamily DUF3488 PF11992.3 gi|336254785|ref|YP_004597892.1| - 0.012 14.2 0.0 0.012 14.2 0.0 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF3488) Podoplanin PF05808.6 gi|336254785|ref|YP_004597892.1| - 0.018 14.5 3.5 0.067 12.7 2.4 2.0 1 0 0 1 1 1 0 Podoplanin Tox-PL-2 PF15643.1 gi|336254785|ref|YP_004597892.1| - 0.2 11.6 0.0 0.4 10.6 0.0 1.4 1 0 0 1 1 1 0 Papain fold toxin 2 CobT PF06213.7 gi|336254785|ref|YP_004597892.1| - 0.39 9.7 10.1 0.62 9.1 7.0 1.3 1 0 0 1 1 1 0 Cobalamin biosynthesis protein CobT CDC45 PF02724.9 gi|336254785|ref|YP_004597892.1| - 0.77 7.7 5.7 1.1 7.2 4.0 1.1 1 0 0 1 1 1 0 CDC45-like protein DUF58 PF01882.13 gi|336254786|ref|YP_004597893.1| - 1.6e-16 60.2 3.5 8.4e-16 57.8 0.2 2.9 3 0 0 3 3 3 1 Protein of unknown function DUF58 DUF3093 PF11292.3 gi|336254786|ref|YP_004597893.1| - 0.014 15.1 2.7 0.026 14.3 1.9 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3093) AAA_3 PF07726.6 gi|336254787|ref|YP_004597894.1| - 2.3e-61 205.1 0.1 5.1e-61 204.0 0.1 1.6 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|336254787|ref|YP_004597894.1| - 5.6e-14 52.0 0.0 1e-13 51.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|336254787|ref|YP_004597894.1| - 7.9e-07 28.1 0.3 0.00099 17.9 0.0 2.5 2 1 0 2 2 2 2 MCM2/3/5 family AAA PF00004.24 gi|336254787|ref|YP_004597894.1| - 4.7e-06 26.8 0.0 1.1e-05 25.6 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|336254787|ref|YP_004597894.1| - 3.2e-05 23.4 0.0 0.00082 18.8 0.0 2.1 1 1 0 1 1 1 1 Sigma-54 interaction domain RuvB_N PF05496.7 gi|336254787|ref|YP_004597894.1| - 5.3e-05 22.3 0.0 0.00031 19.8 0.0 2.0 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus Mg_chelatase PF01078.16 gi|336254787|ref|YP_004597894.1| - 0.002 17.2 0.0 0.029 13.5 0.0 2.1 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI CSD PF00313.17 gi|336254788|ref|YP_004597895.1| - 1.2e-21 76.1 0.3 1.4e-21 76.0 0.2 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain S1-like PF14444.1 gi|336254788|ref|YP_004597895.1| - 0.0025 17.4 0.6 0.0033 17.1 0.4 1.4 1 1 0 1 1 1 1 S1-like CusF_Ec PF11604.3 gi|336254788|ref|YP_004597895.1| - 0.011 15.5 0.0 0.014 15.2 0.0 1.2 1 0 0 1 1 1 0 Copper binding periplasmic protein CusF OB_RNB PF08206.6 gi|336254788|ref|YP_004597895.1| - 0.015 14.7 1.5 0.022 14.2 1.1 1.3 1 0 0 1 1 1 0 Ribonuclease B OB domain Zn_Tnp_IS1595 PF12760.2 gi|336254789|ref|YP_004597896.1| - 0.054 13.3 5.2 0.11 12.2 0.4 2.4 1 1 1 2 2 2 0 Transposase zinc-ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|336254789|ref|YP_004597896.1| - 0.096 12.4 3.8 0.75 9.6 2.6 2.2 1 1 0 1 1 1 0 PhnA Zinc-Ribbon Zn-ribbon_8 PF09723.5 gi|336254789|ref|YP_004597896.1| - 0.11 12.4 3.2 0.26 11.2 2.2 1.5 1 0 0 1 1 1 0 Zinc ribbon domain OrfB_Zn_ribbon PF07282.6 gi|336254789|ref|YP_004597896.1| - 0.18 11.4 0.9 0.34 10.5 0.6 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.7 gi|336254789|ref|YP_004597896.1| - 0.22 10.8 5.0 3.6 6.9 0.2 2.5 1 1 1 2 2 2 0 TFIIB zinc-binding PHD PF00628.24 gi|336254789|ref|YP_004597896.1| - 0.6 9.8 3.8 12 5.6 0.3 2.2 1 1 1 2 2 2 0 PHD-finger BNIP2 PF12496.3 gi|336254789|ref|YP_004597896.1| - 2.5 8.2 7.0 2.8 8.1 4.8 1.1 1 0 0 1 1 1 0 Bcl2-/adenovirus E1B nineteen kDa-interacting protein 2 Bac_luciferase PF00296.15 gi|336254791|ref|YP_004597898.1| - 5.8e-62 209.5 14.2 7.7e-62 209.1 9.8 1.2 1 0 0 1 1 1 1 Luciferase-like monooxygenase VitK2_biosynth PF02621.9 gi|336254791|ref|YP_004597898.1| - 0.02 14.0 0.0 0.033 13.3 0.0 1.3 1 0 0 1 1 1 0 Menaquinone biosynthesis Methyltransf_11 PF08241.7 gi|336254792|ref|YP_004597899.1| - 8.4e-22 77.4 0.0 1.3e-21 76.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|336254792|ref|YP_004597899.1| - 1.4e-17 63.6 0.0 2.4e-17 62.9 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|336254792|ref|YP_004597899.1| - 4.1e-15 55.9 0.1 6.3e-15 55.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|336254792|ref|YP_004597899.1| - 6.8e-15 54.8 0.0 6.2e-14 51.6 0.0 2.0 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.7 gi|336254792|ref|YP_004597899.1| - 4e-14 52.8 0.0 6.9e-14 52.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|336254792|ref|YP_004597899.1| - 5.4e-13 48.9 0.0 7.5e-13 48.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|336254792|ref|YP_004597899.1| - 5.5e-13 49.4 0.2 8.7e-13 48.8 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_29 PF03141.11 gi|336254792|ref|YP_004597899.1| - 1.4e-06 26.9 0.0 2e-06 26.4 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_26 PF13659.1 gi|336254792|ref|YP_004597899.1| - 3.5e-06 27.0 3.7 4e-05 23.6 2.6 2.4 1 1 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|336254792|ref|YP_004597899.1| - 0.00017 21.0 0.0 0.00025 20.4 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW CMAS PF02353.15 gi|336254792|ref|YP_004597899.1| - 0.0068 15.5 0.0 0.0087 15.1 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MTS PF05175.9 gi|336254792|ref|YP_004597899.1| - 0.0081 15.5 0.1 0.013 14.8 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_32 PF13679.1 gi|336254792|ref|YP_004597899.1| - 0.019 14.6 0.0 0.027 14.1 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_8 PF05148.10 gi|336254792|ref|YP_004597899.1| - 0.02 14.5 0.2 0.056 13.0 0.1 1.6 1 1 0 1 1 1 0 Hypothetical methyltransferase zf-NADH-PPase PF09297.6 gi|336254792|ref|YP_004597899.1| - 0.031 13.8 0.5 0.33 10.4 0.4 2.5 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain tRNA_U5-meth_tr PF05958.6 gi|336254792|ref|YP_004597899.1| - 0.054 12.1 0.0 0.082 11.5 0.0 1.2 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase FmrO PF07091.6 gi|336254792|ref|YP_004597899.1| - 0.062 12.2 0.2 0.084 11.8 0.2 1.1 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) Methyltransf_4 PF02390.12 gi|336254792|ref|YP_004597899.1| - 0.12 11.4 0.0 0.31 10.0 0.0 1.7 1 1 0 1 1 1 0 Putative methyltransferase F420_ligase PF01996.11 gi|336254793|ref|YP_004597900.1| - 2.8e-69 232.6 0.0 3.2e-69 232.4 0.0 1.0 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase Hydantoinase_B PF02538.9 gi|336254794|ref|YP_004597901.1| - 1.2e-153 512.1 0.0 3.8e-153 510.5 0.0 1.6 1 1 0 1 1 1 1 Hydantoinase B/oxoprolinase Hydantoinase_A PF01968.13 gi|336254795|ref|YP_004597902.1| - 1.3e-91 306.6 15.3 4.1e-91 305.0 5.0 2.5 3 0 0 3 3 3 2 Hydantoinase/oxoprolinase Hydant_A_N PF05378.8 gi|336254795|ref|YP_004597902.1| - 1.3e-49 168.1 3.0 3.7e-49 166.6 0.1 2.6 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.1 gi|336254795|ref|YP_004597902.1| - 0.015 13.6 4.1 0.079 11.2 0.1 2.3 2 0 0 2 2 2 0 MutL protein IF-2B PF01008.12 gi|336254796|ref|YP_004597903.1| - 1.3e-47 162.1 0.2 1.7e-47 161.7 0.1 1.1 1 0 0 1 1 1 1 Initiation factor 2 subunit family NUDIX PF00293.23 gi|336254796|ref|YP_004597903.1| - 3.6e-09 36.3 0.2 7e-09 35.4 0.1 1.4 1 0 0 1 1 1 1 NUDIX domain 2-Hacid_dh_C PF02826.14 gi|336254797|ref|YP_004597904.1| - 7.1e-54 181.6 0.0 9.2e-54 181.2 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|336254797|ref|YP_004597904.1| - 1.3e-06 27.8 0.0 1.8e-06 27.4 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.10 gi|336254797|ref|YP_004597904.1| - 9.8e-06 25.4 0.0 1.7e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase AdoHcyase_NAD PF00670.16 gi|336254797|ref|YP_004597904.1| - 5.9e-05 22.9 0.1 0.00054 19.8 0.0 2.1 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Pyr_redox PF00070.22 gi|336254797|ref|YP_004597904.1| - 0.00012 22.4 1.0 0.0034 17.7 0.2 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase XdhC_C PF13478.1 gi|336254797|ref|YP_004597904.1| - 0.0007 19.9 0.1 0.11 12.8 0.0 2.3 2 0 0 2 2 2 1 XdhC Rossmann domain F420_oxidored PF03807.12 gi|336254797|ref|YP_004597904.1| - 0.0012 19.2 0.1 0.003 17.9 0.0 1.7 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_10 PF13460.1 gi|336254797|ref|YP_004597904.1| - 0.012 15.6 0.7 0.018 15.0 0.1 1.5 2 0 0 2 2 2 0 NADH(P)-binding NAD_Gly3P_dh_N PF01210.18 gi|336254797|ref|YP_004597904.1| - 0.017 14.8 1.6 1.9 8.2 1.1 2.4 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.13 gi|336254797|ref|YP_004597904.1| - 0.021 14.4 1.0 0.044 13.4 0.7 1.6 1 1 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Amino_oxidase PF01593.19 gi|336254797|ref|YP_004597904.1| - 0.05 12.6 0.0 0.074 12.1 0.0 1.2 1 0 0 1 1 1 0 Flavin containing amine oxidoreductase PALP PF00291.20 gi|336254797|ref|YP_004597904.1| - 0.13 11.4 0.0 0.51 9.5 0.0 1.8 2 0 0 2 2 2 0 Pyridoxal-phosphate dependent enzyme UDPG_MGDP_dh_N PF03721.9 gi|336254797|ref|YP_004597904.1| - 0.16 11.3 1.6 2.7 7.3 0.5 2.3 1 1 1 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ThiF PF00899.16 gi|336254797|ref|YP_004597904.1| - 1.9 8.3 5.6 7.5 6.3 2.8 2.3 1 1 1 2 2 2 0 ThiF family Acetyltransf_10 PF13673.1 gi|336254798|ref|YP_004597905.1| - 7.6e-17 61.5 0.1 1.1e-16 60.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|336254798|ref|YP_004597905.1| - 4.7e-13 48.9 0.0 8e-13 48.2 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|336254798|ref|YP_004597905.1| - 2.1e-08 34.2 0.0 3.6e-08 33.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|336254798|ref|YP_004597905.1| - 3.4e-06 26.9 0.1 1.4e-05 24.9 0.0 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|336254798|ref|YP_004597905.1| - 6.1e-06 25.9 0.0 1.3e-05 24.8 0.0 1.5 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.1 gi|336254798|ref|YP_004597905.1| - 0.005 16.8 0.0 0.019 14.9 0.0 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|336254798|ref|YP_004597905.1| - 0.052 13.4 0.9 1.6 8.6 0.0 2.1 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain DUF3749 PF12568.3 gi|336254798|ref|YP_004597905.1| - 0.097 12.2 0.0 0.19 11.2 0.0 1.5 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain NUDIX PF00293.23 gi|336254799|ref|YP_004597906.1| - 1.8e-11 43.7 0.2 3.9e-11 42.7 0.2 1.5 1 1 0 1 1 1 1 NUDIX domain GrpB PF04229.9 gi|336254800|ref|YP_004597907.1| - 3e-52 176.6 0.4 3.5e-52 176.4 0.3 1.0 1 0 0 1 1 1 1 GrpB protein DGC PF08859.6 gi|336254801|ref|YP_004597908.1| - 3.8e-32 110.4 0.2 4.7e-32 110.1 0.1 1.0 1 0 0 1 1 1 1 DGC domain MMR_HSR1 PF01926.18 gi|336254802|ref|YP_004597909.1| - 2.7e-18 66.0 0.0 4.1e-18 65.4 0.0 1.3 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|336254802|ref|YP_004597909.1| - 1.8e-13 50.0 0.2 3.8e-12 45.7 0.2 2.0 1 1 0 1 1 1 1 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|336254802|ref|YP_004597909.1| - 1.1e-07 31.5 0.0 4.8e-05 22.8 0.0 2.1 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain AAA_18 PF13238.1 gi|336254802|ref|YP_004597909.1| - 7.3e-05 23.0 0.0 0.00013 22.3 0.0 1.4 1 1 0 1 1 1 1 AAA domain Dynamin_N PF00350.18 gi|336254802|ref|YP_004597909.1| - 0.00038 20.3 0.0 0.022 14.5 0.0 2.2 1 1 1 2 2 2 1 Dynamin family ATP_bind_1 PF03029.12 gi|336254802|ref|YP_004597909.1| - 0.00066 19.2 1.7 0.066 12.7 0.1 2.6 2 1 0 2 2 2 1 Conserved hypothetical ATP binding protein MobB PF03205.9 gi|336254802|ref|YP_004597909.1| - 0.0024 17.5 0.1 0.011 15.4 0.0 1.9 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B ABC_tran PF00005.22 gi|336254802|ref|YP_004597909.1| - 0.0026 18.0 0.0 0.0034 17.6 0.0 1.5 1 1 0 1 1 1 1 ABC transporter Miro PF08477.8 gi|336254802|ref|YP_004597909.1| - 0.0027 18.1 0.1 0.017 15.6 0.0 2.1 1 1 0 1 1 1 1 Miro-like protein AAA_17 PF13207.1 gi|336254802|ref|YP_004597909.1| - 0.0028 18.4 0.1 0.0054 17.5 0.1 1.7 1 1 0 1 1 1 1 AAA domain AIG1 PF04548.11 gi|336254802|ref|YP_004597909.1| - 0.0039 16.3 0.0 0.0058 15.7 0.0 1.3 1 0 0 1 1 1 1 AIG1 family DUF258 PF03193.11 gi|336254802|ref|YP_004597909.1| - 0.0099 15.0 0.1 0.026 13.7 0.1 1.7 1 1 0 1 1 1 1 Protein of unknown function, DUF258 ArgK PF03308.11 gi|336254802|ref|YP_004597909.1| - 0.013 14.3 0.4 3.3 6.4 0.0 2.3 2 0 0 2 2 2 0 ArgK protein AAA_25 PF13481.1 gi|336254802|ref|YP_004597909.1| - 0.017 14.5 0.2 0.65 9.3 0.0 2.2 1 1 1 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|336254802|ref|YP_004597909.1| - 0.024 14.1 0.0 0.032 13.6 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain Ras PF00071.17 gi|336254802|ref|YP_004597909.1| - 0.032 13.6 0.0 0.098 12.0 0.0 1.8 2 0 0 2 2 2 0 Ras family AAA_29 PF13555.1 gi|336254802|ref|YP_004597909.1| - 0.034 13.6 0.0 0.063 12.8 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Arf PF00025.16 gi|336254802|ref|YP_004597909.1| - 0.049 12.8 0.0 2.8 7.1 0.0 2.3 2 1 0 2 2 2 0 ADP-ribosylation factor family RBD-FIP PF09457.5 gi|336254802|ref|YP_004597909.1| - 0.054 13.3 0.6 0.14 11.9 0.4 1.6 1 0 0 1 1 1 0 FIP domain AAA_22 PF13401.1 gi|336254802|ref|YP_004597909.1| - 0.057 13.5 0.2 0.49 10.5 0.1 2.6 1 1 1 2 2 2 0 AAA domain DUF389 PF04087.9 gi|336254803|ref|YP_004597910.1| - 6.9e-36 123.2 20.5 6.9e-36 123.2 14.2 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF389) NOG1 PF06858.9 gi|336254805|ref|YP_004597912.1| - 7.9e-18 64.0 0.0 1.6e-17 63.1 0.0 1.5 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) MMR_HSR1 PF01926.18 gi|336254805|ref|YP_004597912.1| - 2.2e-17 63.0 0.0 4.1e-17 62.2 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|336254805|ref|YP_004597912.1| - 4.5e-09 35.7 0.0 8e-09 34.9 0.0 1.4 1 0 0 1 1 1 1 Ferrous iron transport protein B Miro PF08477.8 gi|336254805|ref|YP_004597912.1| - 4.9e-05 23.8 0.0 0.0001 22.8 0.0 1.5 1 0 0 1 1 1 1 Miro-like protein Dynamin_N PF00350.18 gi|336254805|ref|YP_004597912.1| - 0.0046 16.8 1.0 3.3 7.4 0.0 3.0 2 1 1 3 3 3 2 Dynamin family AIG1 PF04548.11 gi|336254805|ref|YP_004597912.1| - 0.018 14.1 0.0 0.036 13.1 0.0 1.5 1 0 0 1 1 1 0 AIG1 family APP_E2 PF12925.2 gi|336254805|ref|YP_004597912.1| - 0.087 12.3 1.5 0.18 11.3 0.7 1.7 1 1 1 2 2 2 0 E2 domain of amyloid precursor protein DUF258 PF03193.11 gi|336254805|ref|YP_004597912.1| - 0.12 11.5 0.0 0.39 9.8 0.0 1.9 1 1 0 1 1 1 0 Protein of unknown function, DUF258 Ldr_toxin PF13940.1 gi|336254806|ref|YP_004597913.1| - 0.058 13.1 2.1 0.058 13.1 1.5 2.8 2 0 0 2 2 2 0 Toxin Ldr, type I toxin-antitoxin system DUF326 PF03860.11 gi|336254807|ref|YP_004597914.1| - 2.9e-09 36.2 43.5 0.0016 18.1 2.6 5.0 4 1 0 4 4 4 4 Domain of Unknown Function (DUF326) Wyosine_form PF08608.7 gi|336254807|ref|YP_004597914.1| - 1.6 8.8 4.7 4.7 7.4 1.2 2.3 1 1 1 2 2 2 0 Wyosine base formation PRA-PH PF01503.12 gi|336254808|ref|YP_004597915.1| - 4.4e-15 55.7 2.3 4.7e-15 55.6 1.6 1.0 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG PF03819.12 gi|336254808|ref|YP_004597915.1| - 0.00015 21.6 4.2 0.00022 21.1 2.9 1.2 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain DUF3839 PF12943.2 gi|336254808|ref|YP_004597915.1| - 0.092 11.8 0.1 0.092 11.8 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3839) DNase-RNase PF02577.9 gi|336254809|ref|YP_004597916.1| - 9.5e-35 118.7 0.0 1.1e-34 118.5 0.0 1.1 1 0 0 1 1 1 1 Bifunctional nuclease SNO PF01174.14 gi|336254810|ref|YP_004597917.1| - 1.3e-44 152.1 0.0 2.4e-44 151.2 0.0 1.4 1 1 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.9 gi|336254810|ref|YP_004597917.1| - 4.3e-09 36.1 0.0 2.8e-08 33.5 0.0 2.3 3 0 0 3 3 3 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_S51 PF03575.12 gi|336254810|ref|YP_004597917.1| - 0.0002 21.1 0.0 0.00028 20.6 0.0 1.2 1 0 0 1 1 1 1 Peptidase family S51 DJ-1_PfpI PF01965.19 gi|336254810|ref|YP_004597917.1| - 0.00078 18.9 0.0 0.0011 18.4 0.0 1.3 1 0 0 1 1 1 1 DJ-1/PfpI family BPL_N PF09825.4 gi|336254810|ref|YP_004597917.1| - 0.0041 15.9 0.0 0.032 13.0 0.0 1.9 2 0 0 2 2 2 1 Biotin-protein ligase, N terminal GATase PF00117.23 gi|336254810|ref|YP_004597917.1| - 0.0057 16.1 0.0 1.5 8.2 0.0 2.1 2 0 0 2 2 2 2 Glutamine amidotransferase class-I Sec61_beta PF03911.11 gi|336254811|ref|YP_004597918.1| - 4.4e-08 32.7 0.1 5.7e-08 32.4 0.1 1.2 1 0 0 1 1 1 1 Sec61beta family GNVR PF13807.1 gi|336254811|ref|YP_004597918.1| - 0.084 12.6 0.1 0.085 12.6 0.1 1.1 1 0 0 1 1 1 0 G-rich domain on putative tyrosine kinase DUF3087 PF11286.3 gi|336254811|ref|YP_004597918.1| - 0.1 11.8 0.1 0.12 11.5 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3087) Thioredoxin PF00085.15 gi|336254812|ref|YP_004597919.1| - 3.3e-22 78.1 0.0 3.6e-22 77.9 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|336254812|ref|YP_004597919.1| - 3.4e-08 33.6 0.0 1.4e-07 31.6 0.0 1.7 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.1 gi|336254812|ref|YP_004597919.1| - 6.4e-08 32.6 0.0 0.00012 22.1 0.0 2.1 1 1 1 2 2 2 2 Thioredoxin-like Thioredoxin_3 PF13192.1 gi|336254812|ref|YP_004597919.1| - 9.3e-06 25.3 0.0 1.1e-05 25.1 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin_9 PF14595.1 gi|336254812|ref|YP_004597919.1| - 4.6e-05 22.9 0.0 5.4e-05 22.7 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin DUF836 PF05768.9 gi|336254812|ref|YP_004597919.1| - 0.00022 21.4 0.1 0.00028 21.0 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Redoxin PF08534.5 gi|336254812|ref|YP_004597919.1| - 0.00027 20.4 0.2 0.04 13.4 0.0 2.0 1 1 1 2 2 2 2 Redoxin KaiB PF07689.7 gi|336254812|ref|YP_004597919.1| - 0.0012 18.2 0.0 0.0015 17.9 0.0 1.2 1 0 0 1 1 1 1 KaiB domain AhpC-TSA PF00578.16 gi|336254812|ref|YP_004597919.1| - 0.0014 18.2 0.2 0.67 9.6 0.1 1.9 1 1 1 2 2 2 2 AhpC/TSA family DSBA PF01323.15 gi|336254812|ref|YP_004597919.1| - 0.002 17.7 0.1 0.022 14.2 0.0 1.9 1 1 1 2 2 2 1 DSBA-like thioredoxin domain Thioredoxin_5 PF13743.1 gi|336254812|ref|YP_004597919.1| - 0.0035 16.9 0.0 0.0036 16.9 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin HyaE PF07449.6 gi|336254812|ref|YP_004597919.1| - 0.0041 16.9 0.0 0.0052 16.6 0.0 1.2 1 0 0 1 1 1 1 Hydrogenase-1 expression protein HyaE Thioredoxin_7 PF13899.1 gi|336254812|ref|YP_004597919.1| - 0.0093 15.9 0.0 0.016 15.2 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin-like TraF PF13728.1 gi|336254812|ref|YP_004597919.1| - 0.016 14.6 0.0 0.018 14.5 0.0 1.2 1 0 0 1 1 1 0 F plasmid transfer operon protein Glutaredoxin PF00462.19 gi|336254812|ref|YP_004597919.1| - 0.044 13.7 0.1 0.089 12.7 0.0 1.6 1 1 1 2 2 2 0 Glutaredoxin F420_oxidored PF03807.12 gi|336254813|ref|YP_004597920.1| - 3.5e-17 62.5 0.1 6.3e-17 61.7 0.0 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Semialdhyde_dh PF01118.19 gi|336254813|ref|YP_004597920.1| - 0.0005 20.3 0.1 0.00077 19.7 0.1 1.4 1 1 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|336254813|ref|YP_004597920.1| - 0.0007 19.3 0.0 0.0012 18.5 0.0 1.4 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.11 gi|336254813|ref|YP_004597920.1| - 0.00074 18.9 0.0 0.0012 18.3 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA adh_short PF00106.20 gi|336254813|ref|YP_004597920.1| - 0.00077 19.4 2.2 0.00098 19.0 0.2 1.9 2 0 0 2 2 2 1 short chain dehydrogenase NAD_binding_2 PF03446.10 gi|336254813|ref|YP_004597920.1| - 0.0022 17.8 0.0 0.0042 16.9 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_10 PF13460.1 gi|336254813|ref|YP_004597920.1| - 0.0057 16.6 1.4 0.0087 16.0 0.5 1.5 1 1 0 1 1 1 1 NADH(P)-binding PDH PF02153.12 gi|336254813|ref|YP_004597920.1| - 0.013 14.3 0.1 0.022 13.6 0.0 1.3 1 0 0 1 1 1 0 Prephenate dehydrogenase CoA_binding PF02629.14 gi|336254813|ref|YP_004597920.1| - 0.018 15.5 0.0 0.073 13.5 0.0 2.1 2 0 0 2 2 2 0 CoA binding domain GFO_IDH_MocA PF01408.17 gi|336254813|ref|YP_004597920.1| - 0.03 14.8 0.1 0.063 13.8 0.0 1.5 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold DapB_N PF01113.15 gi|336254813|ref|YP_004597920.1| - 0.098 12.5 0.2 0.22 11.4 0.1 1.7 2 0 0 2 2 2 0 Dihydrodipicolinate reductase, N-terminus CARDB PF07705.6 gi|336254814|ref|YP_004597921.1| - 3.9e-06 26.8 0.0 0.015 15.3 0.0 2.7 3 0 0 3 3 3 2 CARDB DUF11 PF01345.13 gi|336254814|ref|YP_004597921.1| - 4.2e-05 23.5 0.5 0.058 13.4 0.0 2.9 3 0 0 3 3 3 2 Domain of unknown function DUF11 DUF4352 PF11611.3 gi|336254814|ref|YP_004597921.1| - 0.081 13.0 0.1 15 5.7 0.0 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF4352) FlxA PF14282.1 gi|336254815|ref|YP_004597922.1| - 0.014 15.2 0.3 0.019 14.8 0.2 1.2 1 0 0 1 1 1 0 FlxA-like protein DUF3052 PF11253.3 gi|336254815|ref|YP_004597922.1| - 0.033 13.7 1.0 0.046 13.3 0.4 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3052) LTXXQ PF07813.7 gi|336254815|ref|YP_004597922.1| - 0.048 14.1 0.6 0.064 13.7 0.4 1.1 1 0 0 1 1 1 0 LTXXQ motif family protein Cep57_CLD_2 PF14197.1 gi|336254815|ref|YP_004597922.1| - 0.39 10.6 6.5 5.2 7.0 0.7 2.1 1 1 1 2 2 2 0 Centrosome localisation domain of PPC89 DUF4404 PF14357.1 gi|336254815|ref|YP_004597922.1| - 0.62 10.5 4.9 0.89 10.0 3.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4404) GDPD PF03009.12 gi|336254816|ref|YP_004597923.1| - 1.4e-25 90.3 0.0 2.5e-25 89.4 0.0 1.4 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family GDPD_2 PF13653.1 gi|336254816|ref|YP_004597923.1| - 3.3e-05 23.9 0.6 7.1e-05 22.8 0.4 1.6 1 0 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family Response_reg PF00072.19 gi|336254817|ref|YP_004597924.1| - 5.2e-19 68.3 0.0 6.2e-19 68.0 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain HAD_2 PF13419.1 gi|336254818|ref|YP_004597925.1| - 1.5e-12 48.1 1.5 1.7e-10 41.4 1.1 2.4 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|336254818|ref|YP_004597925.1| - 8.9e-08 32.7 0.0 3.2e-07 30.9 0.0 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|336254818|ref|YP_004597925.1| - 2.3e-07 30.4 0.2 8.5e-07 28.6 0.1 2.1 2 1 0 2 2 2 1 HAD-hyrolase-like Lactamase_B PF00753.22 gi|336254818|ref|YP_004597925.1| - 0.046 13.3 0.1 0.077 12.6 0.1 1.4 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily HD_3 PF13023.1 gi|336254819|ref|YP_004597926.1| - 6.7e-05 22.6 0.0 7.6e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 HD domain HD PF01966.17 gi|336254819|ref|YP_004597926.1| - 0.0069 16.3 0.1 0.0091 15.9 0.0 1.4 1 0 0 1 1 1 1 HD domain UPF0146 PF03686.8 gi|336254820|ref|YP_004597927.1| - 1.2e-28 99.5 0.1 1.3e-28 99.3 0.1 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0146) Nucleotid_trans PF03407.11 gi|336254820|ref|YP_004597927.1| - 0.032 13.9 0.0 5.1 6.8 0.0 2.0 2 0 0 2 2 2 0 Nucleotide-diphospho-sugar transferase HEM4 PF02602.10 gi|336254820|ref|YP_004597927.1| - 0.052 12.7 0.1 0.054 12.7 0.0 1.2 1 0 0 1 1 1 0 Uroporphyrinogen-III synthase HemD DLH PF01738.13 gi|336254820|ref|YP_004597927.1| - 0.11 11.7 0.0 0.18 11.0 0.0 1.4 1 1 0 1 1 1 0 Dienelactone hydrolase family Peptidase_M54 PF07998.6 gi|336254821|ref|YP_004597928.1| - 5.4e-22 78.5 0.0 6.5e-22 78.2 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M54 Reprolysin_2 PF13574.1 gi|336254821|ref|YP_004597928.1| - 3.5e-05 23.9 0.0 4.2e-05 23.6 0.0 1.1 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_4 PF13583.1 gi|336254821|ref|YP_004597928.1| - 4.8e-05 22.9 0.0 5.8e-05 22.7 0.0 1.1 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Peptidase_M10 PF00413.19 gi|336254821|ref|YP_004597928.1| - 0.00027 20.7 0.0 0.00035 20.3 0.0 1.3 1 0 0 1 1 1 1 Matrixin Reprolysin_3 PF13582.1 gi|336254821|ref|YP_004597928.1| - 0.00054 20.4 0.1 0.00071 20.0 0.0 1.2 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_5 PF13688.1 gi|336254821|ref|YP_004597928.1| - 0.00087 19.2 0.0 0.00097 19.1 0.0 1.2 1 0 0 1 1 1 1 Metallo-peptidase family M12 Peptidase_M66 PF10462.4 gi|336254821|ref|YP_004597928.1| - 0.0031 16.4 0.0 0.0042 16.0 0.0 1.2 1 0 0 1 1 1 1 Peptidase M66 DUF1025 PF06262.6 gi|336254821|ref|YP_004597928.1| - 0.0082 15.8 0.0 0.014 15.1 0.0 1.4 1 0 0 1 1 1 1 Possibl zinc metallo-peptidase Peptidase_M43 PF05572.8 gi|336254821|ref|YP_004597928.1| - 0.13 11.8 0.1 0.22 11.0 0.0 1.4 1 0 0 1 1 1 0 Pregnancy-associated plasma protein-A Methyltransf_11 PF08241.7 gi|336254822|ref|YP_004597929.1| - 8.9e-12 45.3 0.0 1.5e-11 44.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|336254822|ref|YP_004597929.1| - 3.1e-09 36.7 0.0 4.4e-09 36.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|336254822|ref|YP_004597929.1| - 9.5e-05 22.8 0.0 0.00025 21.4 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|336254822|ref|YP_004597929.1| - 0.0033 16.5 0.0 0.0062 15.6 0.0 1.5 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_8 PF05148.10 gi|336254822|ref|YP_004597929.1| - 0.0038 16.8 0.0 0.0053 16.4 0.0 1.2 1 0 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_31 PF13847.1 gi|336254822|ref|YP_004597929.1| - 0.0058 16.2 0.0 0.0088 15.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PASTA PF03793.14 gi|336254822|ref|YP_004597929.1| - 0.054 13.1 0.0 0.67 9.6 0.0 2.2 2 0 0 2 2 2 0 PASTA domain N6_N4_Mtase PF01555.13 gi|336254822|ref|YP_004597929.1| - 0.07 12.6 0.0 0.1 12.0 0.0 1.3 1 0 0 1 1 1 0 DNA methylase Methyltransf_25 PF13649.1 gi|336254822|ref|YP_004597929.1| - 0.11 12.8 0.0 0.33 11.3 0.0 1.8 2 0 0 2 2 2 0 Methyltransferase domain ABC_tran PF00005.22 gi|336254823|ref|YP_004597930.1| - 5.5e-42 143.3 0.0 1.4e-21 77.2 0.0 2.5 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|336254823|ref|YP_004597930.1| - 2.6e-16 60.4 0.9 2.2e-06 27.8 0.0 4.2 2 2 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|336254823|ref|YP_004597930.1| - 3.5e-13 49.3 8.1 5.2e-05 22.5 0.5 4.1 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain RLI PF04068.10 gi|336254823|ref|YP_004597930.1| - 1.5e-12 46.8 1.5 2.9e-12 45.9 1.1 1.5 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI AAA_17 PF13207.1 gi|336254823|ref|YP_004597930.1| - 1.1e-07 32.6 0.2 0.003 18.3 0.0 3.0 2 2 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|336254823|ref|YP_004597930.1| - 3.6e-07 30.3 0.9 0.0078 16.3 0.0 3.2 2 2 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|336254823|ref|YP_004597930.1| - 2.9e-06 27.7 0.2 0.03 14.6 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA PF00004.24 gi|336254823|ref|YP_004597930.1| - 1e-05 25.7 0.0 0.026 14.7 0.0 2.8 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.1 gi|336254823|ref|YP_004597930.1| - 2e-05 24.0 1.2 0.19 11.1 0.2 3.6 3 1 0 3 3 3 2 AAA domain RNA_helicase PF00910.17 gi|336254823|ref|YP_004597930.1| - 7.7e-05 22.8 0.0 0.5 10.5 0.0 2.7 2 0 0 2 2 2 2 RNA helicase AAA_16 PF13191.1 gi|336254823|ref|YP_004597930.1| - 0.00011 22.1 2.9 0.2 11.6 0.2 3.0 2 2 0 2 2 2 2 AAA ATPase domain DUF258 PF03193.11 gi|336254823|ref|YP_004597930.1| - 0.00014 21.1 0.0 0.34 10.0 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA_14 PF13173.1 gi|336254823|ref|YP_004597930.1| - 0.00021 21.2 0.1 1.5 8.7 0.0 3.6 3 1 0 3 3 3 1 AAA domain AAA_29 PF13555.1 gi|336254823|ref|YP_004597930.1| - 0.00025 20.4 0.2 0.96 9.0 0.0 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_18 PF13238.1 gi|336254823|ref|YP_004597930.1| - 0.0004 20.6 0.0 1.3 9.3 0.0 2.7 2 1 0 2 2 2 2 AAA domain Fer4 PF00037.22 gi|336254823|ref|YP_004597930.1| - 0.00048 19.6 1.6 0.00048 19.6 1.1 2.7 3 0 0 3 3 3 1 4Fe-4S binding domain NACHT PF05729.7 gi|336254823|ref|YP_004597930.1| - 0.00087 18.9 0.0 1.2 8.7 0.0 2.7 2 0 0 2 2 2 2 NACHT domain SbcCD_C PF13558.1 gi|336254823|ref|YP_004597930.1| - 0.0013 18.5 0.1 0.32 10.9 0.1 2.9 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_33 PF13671.1 gi|336254823|ref|YP_004597930.1| - 0.0016 18.3 0.1 0.77 9.6 0.1 2.8 2 1 0 2 2 2 1 AAA domain Rad17 PF03215.10 gi|336254823|ref|YP_004597930.1| - 0.0022 16.7 0.0 0.42 9.2 0.0 2.5 2 0 0 2 2 2 1 Rad17 cell cycle checkpoint protein MobB PF03205.9 gi|336254823|ref|YP_004597930.1| - 0.0034 17.0 0.2 2.8 7.6 0.0 3.0 3 0 0 3 3 3 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_10 PF12846.2 gi|336254823|ref|YP_004597930.1| - 0.0039 16.6 0.1 1.2 8.4 0.0 3.1 3 0 0 3 3 3 1 AAA-like domain Fer4_6 PF12837.2 gi|336254823|ref|YP_004597930.1| - 0.0042 16.9 1.9 0.0042 16.9 1.3 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain NB-ARC PF00931.17 gi|336254823|ref|YP_004597930.1| - 0.0056 15.5 0.0 1.1 8.0 0.1 2.4 2 0 0 2 2 2 1 NB-ARC domain AAA_24 PF13479.1 gi|336254823|ref|YP_004597930.1| - 0.006 16.1 0.2 2.5 7.6 0.0 2.4 2 0 0 2 2 2 1 AAA domain RuvB_N PF05496.7 gi|336254823|ref|YP_004597930.1| - 0.0084 15.1 0.2 1.8 7.5 0.0 2.7 3 0 0 3 3 2 1 Holliday junction DNA helicase ruvB N-terminus Fer4_7 PF12838.2 gi|336254823|ref|YP_004597930.1| - 0.0094 16.3 11.0 0.021 15.2 7.6 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain DUF87 PF01935.12 gi|336254823|ref|YP_004597930.1| - 0.028 14.2 0.2 15 5.2 0.0 3.4 3 1 0 3 3 3 0 Domain of unknown function DUF87 AAA_5 PF07728.9 gi|336254823|ref|YP_004597930.1| - 0.039 13.6 0.1 9 6.0 0.0 2.9 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) AAA_28 PF13521.1 gi|336254823|ref|YP_004597930.1| - 0.053 13.4 0.1 5 7.0 0.0 3.1 3 0 0 3 3 3 0 AAA domain VirE PF05272.6 gi|336254823|ref|YP_004597930.1| - 0.056 12.9 0.0 6.8 6.1 0.0 2.6 3 0 0 3 3 2 0 Virulence-associated protein E Miro PF08477.8 gi|336254823|ref|YP_004597930.1| - 0.058 13.8 0.0 22 5.5 0.0 2.9 3 0 0 3 3 2 0 Miro-like protein SRP54 PF00448.17 gi|336254823|ref|YP_004597930.1| - 0.069 12.5 0.3 4.6 6.6 0.1 2.5 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_15 PF13175.1 gi|336254823|ref|YP_004597930.1| - 0.076 12.0 0.1 1.7 7.6 0.0 2.8 2 1 1 3 3 3 0 AAA ATPase domain Fer4_9 PF13187.1 gi|336254823|ref|YP_004597930.1| - 0.081 13.1 12.4 0.15 12.3 8.6 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain AAA_13 PF13166.1 gi|336254823|ref|YP_004597930.1| - 0.087 11.2 0.0 5.9 5.2 0.0 2.4 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.10 gi|336254823|ref|YP_004597930.1| - 0.09 12.4 3.1 11 5.6 0.0 3.2 4 0 0 4 4 3 0 NTPase MMR_HSR1 PF01926.18 gi|336254823|ref|YP_004597930.1| - 0.11 12.4 0.0 0.88 9.5 0.0 2.4 2 1 0 2 2 2 0 50S ribosome-binding GTPase ArgK PF03308.11 gi|336254823|ref|YP_004597930.1| - 0.2 10.4 0.8 3.9 6.1 0.0 2.2 2 0 0 2 2 2 0 ArgK protein AAA_19 PF13245.1 gi|336254823|ref|YP_004597930.1| - 0.22 11.2 1.0 8.6 6.1 0.0 3.3 3 0 0 3 3 3 0 Part of AAA domain IstB_IS21 PF01695.12 gi|336254823|ref|YP_004597930.1| - 0.28 10.5 0.8 2.9 7.2 0.0 2.3 2 0 0 2 2 2 0 IstB-like ATP binding protein Fer4_21 PF14697.1 gi|336254823|ref|YP_004597930.1| - 0.4 10.5 8.8 0.79 9.6 6.1 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|336254823|ref|YP_004597930.1| - 1.2 9.2 12.8 0.26 11.2 1.8 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_10 PF13237.1 gi|336254823|ref|YP_004597930.1| - 2 8.3 11.4 4 7.3 7.9 1.6 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|336254823|ref|YP_004597930.1| - 6.2 7.6 10.9 0.11 13.2 0.9 2.1 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain DUF3681 PF12442.3 gi|336254824|ref|YP_004597931.1| - 0.019 15.1 0.9 0.026 14.6 0.6 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3681) DUF373 PF04123.8 gi|336254824|ref|YP_004597931.1| - 0.098 11.6 0.5 0.1 11.5 0.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF373) AMP-binding PF00501.23 gi|336254825|ref|YP_004597932.1| - 7.7e-93 311.1 0.4 9.2e-93 310.8 0.3 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|336254825|ref|YP_004597932.1| - 6.4e-18 65.4 0.1 2e-17 63.8 0.1 1.9 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain Radical_SAM PF04055.16 gi|336254825|ref|YP_004597932.1| - 0.0064 16.6 0.2 0.54 10.4 0.0 2.7 3 0 0 3 3 3 1 Radical SAM superfamily HTH_24 PF13412.1 gi|336254826|ref|YP_004597933.1| - 7.9e-05 21.9 0.0 0.00012 21.4 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding GntR PF00392.16 gi|336254826|ref|YP_004597933.1| - 0.00088 18.6 0.1 0.0016 17.8 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family TrmB PF01978.14 gi|336254826|ref|YP_004597933.1| - 0.001 18.7 0.1 0.0013 18.3 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|336254826|ref|YP_004597933.1| - 0.0012 18.3 0.0 0.0018 17.8 0.0 1.2 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.2 gi|336254826|ref|YP_004597933.1| - 0.0019 17.8 0.0 0.0022 17.6 0.0 1.2 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|336254826|ref|YP_004597933.1| - 0.0021 17.7 0.0 0.0027 17.3 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|336254826|ref|YP_004597933.1| - 0.0026 18.0 0.0 0.0037 17.5 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain TFIIE_alpha PF02002.12 gi|336254826|ref|YP_004597933.1| - 0.0034 16.8 0.1 0.0042 16.5 0.0 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit PaaX PF07848.7 gi|336254826|ref|YP_004597933.1| - 0.023 14.6 0.0 0.034 14.1 0.0 1.2 1 0 0 1 1 1 0 PaaX-like protein DUF2540 PF10802.3 gi|336254826|ref|YP_004597933.1| - 0.029 14.0 0.0 0.045 13.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2540) HTH_5 PF01022.15 gi|336254826|ref|YP_004597933.1| - 0.037 13.6 0.0 0.052 13.2 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_12 PF08461.5 gi|336254826|ref|YP_004597933.1| - 0.039 13.6 0.1 0.11 12.2 0.1 1.7 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_IclR PF09339.5 gi|336254826|ref|YP_004597933.1| - 0.066 12.8 0.0 0.14 11.7 0.0 1.5 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_28 PF13518.1 gi|336254826|ref|YP_004597933.1| - 0.089 12.8 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_20 PF12840.2 gi|336254826|ref|YP_004597933.1| - 0.096 12.4 0.0 0.14 11.9 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|336254826|ref|YP_004597933.1| - 0.12 12.2 0.0 0.15 11.8 0.0 1.2 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_36 PF13730.1 gi|336254826|ref|YP_004597933.1| - 0.12 12.5 0.0 0.25 11.5 0.0 1.5 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_29 PF13551.1 gi|336254826|ref|YP_004597933.1| - 0.12 12.4 0.0 0.15 12.2 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn helix DUF1426 PF07234.6 gi|336254827|ref|YP_004597934.1| - 0.025 14.3 0.2 0.045 13.4 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1426) MscS_TM PF12794.2 gi|336254827|ref|YP_004597934.1| - 0.04 12.5 2.6 0.048 12.2 1.8 1.2 1 0 0 1 1 1 0 Mechanosensitive ion channel inner membrane domain 1 TM_helix PF05552.7 gi|336254827|ref|YP_004597934.1| - 0.082 12.5 0.2 0.082 12.5 0.1 3.1 4 0 0 4 4 4 0 Conserved TM helix ABC2_membrane_4 PF12730.2 gi|336254827|ref|YP_004597934.1| - 0.095 11.8 8.1 6.4 5.8 5.6 2.1 1 1 0 1 1 1 0 ABC-2 family transporter protein Bax1-I PF01027.15 gi|336254827|ref|YP_004597934.1| - 0.24 10.9 6.9 0.95 9.0 0.1 2.1 1 1 1 2 2 2 0 Inhibitor of apoptosis-promoting Bax1 FixH PF05751.6 gi|336254827|ref|YP_004597934.1| - 0.72 9.6 4.9 0.4 10.4 0.3 2.1 2 0 0 2 2 2 0 FixH DUF805 PF05656.9 gi|336254827|ref|YP_004597934.1| - 3.4 7.5 7.3 8.4 6.2 0.7 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF805) NAD_synthase PF02540.12 gi|336254828|ref|YP_004597935.1| - 6.5e-73 244.6 0.0 7.8e-73 244.3 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.11 gi|336254828|ref|YP_004597935.1| - 1e-06 27.5 0.0 0.00071 18.2 0.0 2.2 2 0 0 2 2 2 2 tRNA methyl transferase Asn_synthase PF00733.16 gi|336254828|ref|YP_004597935.1| - 5.5e-05 22.7 0.0 8.4e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 Asparagine synthase QueC PF06508.8 gi|336254828|ref|YP_004597935.1| - 0.00031 20.0 0.0 0.00092 18.5 0.0 1.7 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC PAPS_reduct PF01507.14 gi|336254828|ref|YP_004597935.1| - 0.13 12.1 0.0 0.2 11.4 0.0 1.3 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family T2SE PF00437.15 gi|336254829|ref|YP_004597936.1| - 6.1e-13 48.2 0.0 1e-12 47.5 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein KH_1 PF00013.24 gi|336254829|ref|YP_004597936.1| - 1.2e-07 31.2 0.1 4.4e-07 29.4 0.1 2.0 1 0 0 1 1 1 1 KH domain AAA_17 PF13207.1 gi|336254829|ref|YP_004597936.1| - 8.1e-05 23.4 0.0 0.00042 21.1 0.0 2.3 2 0 0 2 2 1 1 AAA domain AAA_33 PF13671.1 gi|336254829|ref|YP_004597936.1| - 0.00051 19.9 0.0 0.0091 15.8 0.0 2.3 2 0 0 2 2 2 1 AAA domain Thymidylate_kin PF02223.12 gi|336254829|ref|YP_004597936.1| - 0.00073 18.9 0.0 0.0015 17.9 0.0 1.5 1 0 0 1 1 1 1 Thymidylate kinase KH_2 PF07650.12 gi|336254829|ref|YP_004597936.1| - 0.0015 18.0 1.8 0.0042 16.6 1.2 1.8 1 0 0 1 1 1 1 KH domain AAA_25 PF13481.1 gi|336254829|ref|YP_004597936.1| - 0.0023 17.3 0.0 0.0063 15.9 0.0 1.8 1 0 0 1 1 1 1 AAA domain KH_3 PF13014.1 gi|336254829|ref|YP_004597936.1| - 0.0027 17.3 0.6 0.012 15.2 0.3 2.2 2 0 0 2 2 2 1 KH domain AAA_19 PF13245.1 gi|336254829|ref|YP_004597936.1| - 0.0031 17.2 0.0 0.0063 16.2 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain Zeta_toxin PF06414.7 gi|336254829|ref|YP_004597936.1| - 0.0038 16.3 0.0 0.0072 15.4 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_29 PF13555.1 gi|336254829|ref|YP_004597936.1| - 0.004 16.6 0.0 0.011 15.2 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|336254829|ref|YP_004597936.1| - 0.0045 17.0 0.0 0.015 15.3 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain AAA_30 PF13604.1 gi|336254829|ref|YP_004597936.1| - 0.0047 16.5 0.0 0.011 15.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|336254829|ref|YP_004597936.1| - 0.01 16.1 0.3 0.036 14.3 0.0 2.1 2 0 0 2 2 1 1 AAA domain KH_5 PF13184.1 gi|336254829|ref|YP_004597936.1| - 0.012 15.3 0.1 0.038 13.7 0.1 1.8 1 0 0 1 1 1 0 NusA-like KH domain NTPase_1 PF03266.10 gi|336254829|ref|YP_004597936.1| - 0.012 15.2 0.0 0.033 13.8 0.0 1.8 1 0 0 1 1 1 0 NTPase KaiC PF06745.8 gi|336254829|ref|YP_004597936.1| - 0.018 14.1 0.0 0.064 12.3 0.0 1.8 2 0 0 2 2 2 0 KaiC AAA_22 PF13401.1 gi|336254829|ref|YP_004597936.1| - 0.021 14.9 0.0 0.056 13.5 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|336254829|ref|YP_004597936.1| - 0.022 14.5 0.0 0.048 13.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_14 PF13173.1 gi|336254829|ref|YP_004597936.1| - 0.022 14.6 0.0 0.042 13.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|336254829|ref|YP_004597936.1| - 0.026 13.9 0.0 0.044 13.1 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_28 PF13521.1 gi|336254829|ref|YP_004597936.1| - 0.032 14.1 0.0 0.15 11.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain PIN_4 PF13638.1 gi|336254829|ref|YP_004597936.1| - 0.033 14.2 0.0 0.13 12.3 0.0 2.0 1 1 0 1 1 1 0 PIN domain AAA PF00004.24 gi|336254829|ref|YP_004597936.1| - 0.046 13.9 0.0 0.1 12.7 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) KTI12 PF08433.5 gi|336254829|ref|YP_004597936.1| - 0.05 12.8 0.0 0.097 11.8 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 Viral_helicase1 PF01443.13 gi|336254829|ref|YP_004597936.1| - 0.065 12.7 0.0 0.1 12.0 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase NACHT PF05729.7 gi|336254829|ref|YP_004597936.1| - 0.073 12.7 0.0 0.15 11.6 0.0 1.5 1 0 0 1 1 1 0 NACHT domain Sigma54_activat PF00158.21 gi|336254829|ref|YP_004597936.1| - 0.089 12.2 0.0 0.19 11.1 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain Sigma54_activ_2 PF14532.1 gi|336254829|ref|YP_004597936.1| - 0.089 12.8 0.0 0.21 11.6 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain FtsK_SpoIIIE PF01580.13 gi|336254829|ref|YP_004597936.1| - 0.093 12.1 0.0 0.23 10.8 0.0 1.6 1 0 0 1 1 1 0 FtsK/SpoIIIE family ABC_tran PF00005.22 gi|336254829|ref|YP_004597936.1| - 0.11 12.7 0.0 0.25 11.6 0.0 1.6 1 0 0 1 1 1 0 ABC transporter RNA_helicase PF00910.17 gi|336254829|ref|YP_004597936.1| - 0.18 11.9 0.0 0.37 11.0 0.0 1.5 1 0 0 1 1 1 0 RNA helicase NB-ARC PF00931.17 gi|336254829|ref|YP_004597936.1| - 0.19 10.5 0.0 0.32 9.8 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_23 PF13476.1 gi|336254829|ref|YP_004597936.1| - 0.24 11.7 0.0 1.4 9.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain HTH_20 PF12840.2 gi|336254830|ref|YP_004597937.1| - 0.00026 20.7 0.2 0.0025 17.5 0.1 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|336254830|ref|YP_004597937.1| - 0.00041 19.9 0.1 0.00086 18.9 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|336254830|ref|YP_004597937.1| - 0.0021 17.7 0.1 0.0033 17.0 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|336254830|ref|YP_004597937.1| - 0.0053 16.1 0.0 0.0096 15.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|336254830|ref|YP_004597937.1| - 0.0093 16.2 0.0 0.02 15.2 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF1724 PF08350.5 gi|336254830|ref|YP_004597937.1| - 0.018 14.5 0.1 0.16 11.5 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1724) HTH_11 PF08279.7 gi|336254830|ref|YP_004597937.1| - 0.037 13.6 0.0 0.062 12.9 0.0 1.3 1 0 0 1 1 1 0 HTH domain TrmB PF01978.14 gi|336254830|ref|YP_004597937.1| - 0.05 13.3 0.0 0.11 12.2 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_DeoR PF08220.7 gi|336254830|ref|YP_004597937.1| - 0.055 13.0 0.0 0.097 12.2 0.0 1.3 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Peptidase_M20 PF01546.23 gi|336254831|ref|YP_004597938.1| - 5.4e-28 97.7 3.2 7.2e-28 97.3 2.2 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|336254831|ref|YP_004597938.1| - 3.4e-15 55.7 0.6 2.8e-14 52.7 0.1 2.1 2 0 0 2 2 2 1 Peptidase dimerisation domain TFIIS_C PF01096.13 gi|336254832|ref|YP_004597939.1| - 2.9e-05 23.6 3.1 0.011 15.3 0.3 2.3 2 0 0 2 2 2 2 Transcription factor S-II (TFIIS) DUF35_N PF12172.3 gi|336254832|ref|YP_004597939.1| - 0.0024 17.7 1.8 0.0039 17.0 1.2 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) HypA PF01155.14 gi|336254832|ref|YP_004597939.1| - 0.0035 16.9 1.1 0.0044 16.6 0.8 1.2 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family Lar_restr_allev PF14354.1 gi|336254832|ref|YP_004597939.1| - 0.0039 17.4 3.7 0.29 11.4 0.1 2.3 1 1 1 2 2 2 2 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.5 gi|336254832|ref|YP_004597939.1| - 0.0052 16.6 6.2 0.085 12.8 4.3 2.3 1 1 0 1 1 1 1 Zinc ribbon domain DZR PF12773.2 gi|336254832|ref|YP_004597939.1| - 0.0063 16.3 1.7 0.0093 15.7 1.2 1.3 1 0 0 1 1 1 1 Double zinc ribbon Nop10p PF04135.7 gi|336254832|ref|YP_004597939.1| - 0.0068 16.1 0.6 0.011 15.4 0.4 1.3 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family zf-C3HC4_3 PF13920.1 gi|336254832|ref|YP_004597939.1| - 0.013 15.1 0.5 0.018 14.6 0.3 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) YhfH PF14149.1 gi|336254832|ref|YP_004597939.1| - 0.029 14.1 4.0 2.8 7.8 0.1 3.1 2 1 1 3 3 3 0 YhfH-like protein Ogr_Delta PF04606.7 gi|336254832|ref|YP_004597939.1| - 0.034 13.8 1.5 1.8 8.2 0.1 2.2 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-RING_3 PF14369.1 gi|336254832|ref|YP_004597939.1| - 0.034 14.1 0.4 9.6 6.3 0.0 2.5 2 0 0 2 2 2 0 zinc-finger FYVE PF01363.16 gi|336254832|ref|YP_004597939.1| - 0.035 13.9 0.0 0.04 13.8 0.0 1.2 1 0 0 1 1 1 0 FYVE zinc finger DNA_ligase_ZBD PF03119.11 gi|336254832|ref|YP_004597939.1| - 0.053 13.2 1.2 0.065 12.9 0.1 1.8 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Ribosomal_L33 PF00471.15 gi|336254832|ref|YP_004597939.1| - 0.055 13.7 1.3 0.061 13.5 0.5 1.5 1 1 0 1 1 1 0 Ribosomal protein L33 DUF2072 PF09845.4 gi|336254832|ref|YP_004597939.1| - 0.061 13.2 0.4 0.086 12.7 0.3 1.3 1 0 0 1 1 1 0 Zn-ribbon containing protein (DUF2072) Nudix_N_2 PF14803.1 gi|336254832|ref|YP_004597939.1| - 0.087 12.5 1.9 2.6 7.7 0.2 2.2 2 0 0 2 2 2 0 Nudix N-terminal RE_MamI PF09567.5 gi|336254832|ref|YP_004597939.1| - 0.089 11.8 0.3 0.096 11.7 0.2 1.1 1 0 0 1 1 1 0 MamI restriction endonuclease FYDLN_acid PF09538.5 gi|336254832|ref|YP_004597939.1| - 0.11 13.0 8.6 0.16 12.5 5.6 1.6 1 1 0 1 1 1 0 Protein of unknown function (FYDLN_acid) TF_Zn_Ribbon PF08271.7 gi|336254832|ref|YP_004597939.1| - 0.13 11.6 4.0 3.7 6.9 0.1 2.5 3 0 0 3 3 2 0 TFIIB zinc-binding Ribosomal_L37e PF01907.14 gi|336254832|ref|YP_004597939.1| - 0.13 12.0 0.4 0.2 11.5 0.3 1.2 1 0 0 1 1 1 0 Ribosomal protein L37e zf-ribbon_3 PF13248.1 gi|336254832|ref|YP_004597939.1| - 0.16 11.2 4.3 0.9 8.8 3.3 1.9 1 1 1 2 2 2 0 zinc-ribbon domain zf-H2C2_2 PF13465.1 gi|336254832|ref|YP_004597939.1| - 0.16 12.2 1.4 4.2 7.8 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger double domain OrfB_Zn_ribbon PF07282.6 gi|336254832|ref|YP_004597939.1| - 0.39 10.4 2.9 9.4 5.9 0.1 2.2 1 1 1 2 2 2 0 Putative transposase DNA-binding domain zf-NADH-PPase PF09297.6 gi|336254832|ref|YP_004597939.1| - 0.97 8.9 4.9 6.8 6.2 0.2 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-CSL PF05207.8 gi|336254832|ref|YP_004597939.1| - 1.2 8.6 4.9 2.3 7.8 3.2 1.6 1 1 0 1 1 1 0 CSL zinc finger zf-C2H2 PF00096.21 gi|336254832|ref|YP_004597939.1| - 2 8.9 4.5 0.62 10.5 0.3 2.0 1 1 1 2 2 2 0 Zinc finger, C2H2 type DUF2953 PF11167.3 gi|336254833|ref|YP_004597940.1| - 1.3 8.9 5.3 0.24 11.3 0.7 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2953) Yip1 PF04893.12 gi|336254833|ref|YP_004597940.1| - 1.4 8.3 28.3 1.7 8.1 19.6 1.1 1 0 0 1 1 1 0 Yip1 domain Peptidase_M32 PF02074.10 gi|336254834|ref|YP_004597941.1| - 3.4e-156 520.7 3.4 4.2e-156 520.4 2.3 1.0 1 0 0 1 1 1 1 Carboxypeptidase Taq (M32) metallopeptidase adh_short PF00106.20 gi|336254836|ref|YP_004597943.1| - 1.1e-35 122.9 0.5 1.1e-35 122.9 0.3 1.5 2 0 0 2 2 2 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|336254836|ref|YP_004597943.1| - 1.9e-14 54.0 0.0 2.4e-14 53.7 0.0 1.2 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|336254836|ref|YP_004597943.1| - 6.8e-14 51.9 0.2 1.1e-13 51.3 0.1 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|336254836|ref|YP_004597943.1| - 1e-05 25.0 0.1 2.1e-05 24.0 0.1 1.5 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|336254836|ref|YP_004597943.1| - 4.2e-05 23.6 3.1 0.00017 21.6 2.1 1.9 1 1 0 1 1 1 1 NADH(P)-binding Eno-Rase_NADH_b PF12242.3 gi|336254836|ref|YP_004597943.1| - 0.0052 16.5 0.2 0.013 15.2 0.1 1.6 1 0 0 1 1 1 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase Polysacc_synt_2 PF02719.10 gi|336254836|ref|YP_004597943.1| - 0.0079 15.1 0.0 0.013 14.4 0.0 1.4 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein DAO PF01266.19 gi|336254836|ref|YP_004597943.1| - 0.042 12.7 0.1 0.98 8.2 0.1 2.1 1 1 0 1 1 1 0 FAD dependent oxidoreductase ADH_zinc_N PF00107.21 gi|336254836|ref|YP_004597943.1| - 0.16 11.4 1.8 0.91 9.0 0.4 2.7 2 2 1 3 3 3 0 Zinc-binding dehydrogenase CSD PF00313.17 gi|336254838|ref|YP_004597945.1| - 1.3e-19 69.7 0.5 1.4e-19 69.6 0.3 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain OB_RNB PF08206.6 gi|336254838|ref|YP_004597945.1| - 0.0022 17.4 1.7 0.0033 16.9 1.2 1.2 1 0 0 1 1 1 1 Ribonuclease B OB domain S1-like PF14444.1 gi|336254838|ref|YP_004597945.1| - 0.007 16.0 0.1 0.0087 15.7 0.0 1.3 1 0 0 1 1 1 1 S1-like CusF_Ec PF11604.3 gi|336254838|ref|YP_004597945.1| - 0.081 12.7 0.0 0.1 12.4 0.0 1.3 1 0 0 1 1 1 0 Copper binding periplasmic protein CusF Peripla_BP_2 PF01497.13 gi|336254839|ref|YP_004597946.1| - 1.3e-39 135.7 0.9 1.7e-39 135.3 0.6 1.1 1 0 0 1 1 1 1 Periplasmic binding protein DUF883 PF05957.8 gi|336254839|ref|YP_004597946.1| - 0.024 14.9 0.5 0.052 13.9 0.3 1.5 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF883) Prok-JAB PF14464.1 gi|336254840|ref|YP_004597947.1| - 4.2e-20 71.2 0.1 6.6e-20 70.6 0.1 1.3 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain JAB PF01398.16 gi|336254840|ref|YP_004597947.1| - 9.5e-09 35.0 0.0 1.5e-08 34.3 0.0 1.2 1 0 0 1 1 1 1 JAB1/Mov34/MPN/PAD-1 ubiquitin protease Toxin-JAB1 PF15659.1 gi|336254840|ref|YP_004597947.1| - 0.016 15.0 0.0 0.024 14.5 0.0 1.2 1 0 0 1 1 1 0 JAB-like toxin 1 DUF664 PF04978.7 gi|336254842|ref|YP_004597949.1| - 0.016 15.4 0.5 0.14 12.3 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF664) WXG100 PF06013.7 gi|336254842|ref|YP_004597949.1| - 0.088 12.8 0.1 0.42 10.6 0.0 1.9 2 0 0 2 2 2 0 Proteins of 100 residues with WXG Sulfatase PF00884.18 gi|336254843|ref|YP_004597950.1| - 3.9e-47 160.9 0.1 5.6e-47 160.4 0.0 1.2 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|336254843|ref|YP_004597950.1| - 1.9e-10 40.6 3.7 8.2e-10 38.5 2.6 1.9 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase DUF229 PF02995.12 gi|336254843|ref|YP_004597950.1| - 0.0086 14.5 0.1 0.012 14.0 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF229) Sulfatase_C PF14707.1 gi|336254843|ref|YP_004597950.1| - 0.074 13.3 0.7 0.38 11.0 0.1 2.3 2 1 1 3 3 3 0 C-terminal region of aryl-sulfatase DUF1501 PF07394.7 gi|336254843|ref|YP_004597950.1| - 0.14 10.9 1.3 0.54 9.0 0.3 2.2 3 0 0 3 3 3 0 Protein of unknown function (DUF1501) DoxX PF07681.7 gi|336254845|ref|YP_004597952.1| - 5.3e-08 33.1 10.9 5.3e-08 33.1 7.6 1.7 2 0 0 2 2 2 1 DoxX DoxD PF04173.8 gi|336254845|ref|YP_004597952.1| - 1.6e-05 24.6 8.4 9.4e-05 22.1 5.9 1.9 1 1 0 1 1 1 1 TQO small subunit DoxD MauE PF07291.6 gi|336254845|ref|YP_004597952.1| - 0.13 11.8 1.5 0.19 11.3 0.7 1.4 1 1 0 1 1 1 0 Methylamine utilisation protein MauE tRNA-synt_His PF13393.1 gi|336254846|ref|YP_004597953.1| - 1.9e-55 188.1 0.0 2.2e-55 187.8 0.0 1.1 1 0 0 1 1 1 1 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.20 gi|336254846|ref|YP_004597953.1| - 2e-22 79.5 0.0 2.9e-22 79.0 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|336254846|ref|YP_004597953.1| - 3.1e-14 52.6 0.9 6.2e-14 51.7 0.1 1.8 2 0 0 2 2 2 1 Anticodon binding domain tRNA-synt_2d PF01409.15 gi|336254846|ref|YP_004597953.1| - 0.00079 18.6 0.0 0.0015 17.8 0.0 1.4 1 1 0 1 1 1 1 tRNA synthetases class II core domain (F) Asn_synthase PF00733.16 gi|336254847|ref|YP_004597954.1| - 0.0021 17.6 0.1 0.0052 16.3 0.0 1.6 2 0 0 2 2 2 1 Asparagine synthase dsDNA_bind PF01984.15 gi|336254848|ref|YP_004597955.1| - 2.6e-29 101.3 14.0 3e-29 101.1 9.7 1.0 1 0 0 1 1 1 1 Double-stranded DNA-binding domain PCI PF01399.22 gi|336254848|ref|YP_004597955.1| - 0.0093 16.2 0.1 0.018 15.3 0.1 1.8 1 1 0 1 1 1 1 PCI domain DUF648 PF04890.8 gi|336254848|ref|YP_004597955.1| - 0.068 12.3 1.7 0.078 12.1 1.2 1.0 1 0 0 1 1 1 0 Family of unknown function (DUF648) DUF217 PF02697.9 gi|336254848|ref|YP_004597955.1| - 0.37 11.0 6.6 1.1 9.5 0.1 2.3 2 1 0 2 2 2 0 Uncharacterized ACR, COG1753 APC_CDC26 PF10471.4 gi|336254848|ref|YP_004597955.1| - 1.3 9.8 12.7 1.2 9.9 6.4 2.0 1 1 1 2 2 2 0 Anaphase-promoting complex APC subunit 1 Hid1 PF12722.2 gi|336254848|ref|YP_004597955.1| - 1.8 6.1 5.7 2 5.9 4.0 1.0 1 0 0 1 1 1 0 High-temperature-induced dauer-formation protein Ribosomal_S19e PF01090.14 gi|336254849|ref|YP_004597956.1| - 1.9e-46 156.9 0.0 2.2e-46 156.7 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e Met_synt_B12 PF02965.12 gi|336254849|ref|YP_004597956.1| - 0.0054 15.9 0.0 0.0071 15.5 0.0 1.3 1 0 0 1 1 1 1 Vitamin B12 dependent methionine synthase, activation domain GntR PF00392.16 gi|336254849|ref|YP_004597956.1| - 0.014 14.8 0.2 0.078 12.4 0.1 2.3 3 0 0 3 3 3 0 Bacterial regulatory proteins, gntR family HTH_15 PF12324.3 gi|336254849|ref|YP_004597956.1| - 0.014 15.0 0.1 1.1 8.9 0.0 2.5 1 1 1 2 2 2 0 Helix-turn-helix domain of alkylmercury lyase Rrf2 PF02082.15 gi|336254849|ref|YP_004597956.1| - 0.031 14.3 0.0 0.27 11.3 0.0 2.1 2 0 0 2 2 2 0 Transcriptional regulator HTH_45 PF14947.1 gi|336254849|ref|YP_004597956.1| - 0.066 13.0 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_12 PF08461.5 gi|336254849|ref|YP_004597956.1| - 0.11 12.2 0.9 0.57 9.9 0.1 2.4 3 0 0 3 3 3 0 Ribonuclease R winged-helix domain AIRS PF00586.19 gi|336254850|ref|YP_004597957.1| - 8e-17 61.2 1.7 8e-17 61.2 1.2 1.9 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.17 gi|336254850|ref|YP_004597957.1| - 1.2e-14 54.6 0.1 2e-14 53.8 0.1 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain Peptidase_M50 PF02163.17 gi|336254851|ref|YP_004597958.1| - 1.3e-17 63.4 2.4 3.2e-16 58.8 1.6 2.3 1 1 0 1 1 1 1 Peptidase family M50 DUF2456 PF10445.4 gi|336254851|ref|YP_004597958.1| - 0.15 11.9 1.7 7 6.6 0.1 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2456) MoaE PF02391.12 gi|336254854|ref|YP_004597961.1| - 9.6e-23 80.2 0.7 1.8e-22 79.3 0.5 1.5 1 0 0 1 1 1 1 MoaE protein DUF3906 PF13046.1 gi|336254854|ref|YP_004597961.1| - 0.037 13.6 0.1 0.068 12.8 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3906) PGA_cap PF09587.5 gi|336254855|ref|YP_004597962.1| - 3e-65 220.0 0.0 3.5e-65 219.8 0.0 1.1 1 0 0 1 1 1 1 Bacterial capsule synthesis protein PGA_cap AA_kinase PF00696.23 gi|336254856|ref|YP_004597963.1| - 2.7e-29 102.4 4.1 3.3e-29 102.1 2.8 1.1 1 0 0 1 1 1 1 Amino acid kinase family tRNA-synt_1f PF01921.13 gi|336254857|ref|YP_004597964.1| - 3.5e-100 335.1 0.0 4.7e-100 334.7 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (K) tRNA-synt_1g PF09334.6 gi|336254857|ref|YP_004597964.1| - 1.1e-08 34.1 0.0 8.8e-07 27.9 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.14 gi|336254857|ref|YP_004597964.1| - 0.0012 18.0 0.0 0.011 14.8 0.0 2.2 3 0 0 3 3 3 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1b PF00579.20 gi|336254857|ref|YP_004597964.1| - 0.054 12.6 0.0 4.7 6.2 0.0 2.2 2 0 0 2 2 2 0 tRNA synthetases class I (W and Y) Peptidase_M50 PF02163.17 gi|336254858|ref|YP_004597965.1| - 8.4e-29 99.8 0.0 4.6e-28 97.4 0.0 2.1 2 1 0 2 2 2 1 Peptidase family M50 PDZ_2 PF13180.1 gi|336254858|ref|YP_004597965.1| - 2.7e-21 75.2 0.9 1.3e-06 28.1 0.0 3.3 1 1 2 3 3 3 3 PDZ domain PDZ PF00595.19 gi|336254858|ref|YP_004597965.1| - 2.5e-10 40.3 1.7 1.6e-06 28.1 0.2 2.6 1 1 0 2 2 2 2 PDZ domain (Also known as DHR or GLGF) Tricorn_PDZ PF14685.1 gi|336254858|ref|YP_004597965.1| - 1.5e-08 34.2 2.5 0.0031 17.2 0.1 3.3 2 1 1 3 3 3 2 Tricorn protease PDZ domain GRASP55_65 PF04495.9 gi|336254858|ref|YP_004597965.1| - 0.0025 17.7 0.0 0.36 10.8 0.0 2.5 1 1 0 2 2 2 1 GRASP55/65 PDZ-like domain RskA PF10099.4 gi|336254858|ref|YP_004597965.1| - 0.15 11.8 4.2 0.31 10.7 0.3 2.5 2 0 0 2 2 2 0 Anti-sigma-K factor rskA PadR PF03551.9 gi|336254859|ref|YP_004597966.1| - 8.4e-24 83.1 0.3 1.4e-23 82.4 0.2 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family AphA_like PF14557.1 gi|336254859|ref|YP_004597966.1| - 0.02 14.4 0.0 0.025 14.1 0.0 1.1 1 0 0 1 1 1 0 Putative AphA-like transcriptional regulator TrmB PF01978.14 gi|336254859|ref|YP_004597966.1| - 0.068 12.8 0.0 0.23 11.1 0.0 2.0 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|336254859|ref|YP_004597966.1| - 0.13 12.6 0.0 0.26 11.6 0.0 1.6 1 1 0 1 1 1 0 Winged helix DNA-binding domain Chlor_dismutase PF06778.7 gi|336254860|ref|YP_004597967.1| - 2.1e-50 171.1 0.0 3.9e-50 170.2 0.0 1.4 1 0 0 1 1 1 1 Chlorite dismutase ABM PF03992.11 gi|336254860|ref|YP_004597967.1| - 4.9e-08 32.8 0.3 4.9e-08 32.8 0.2 4.2 4 0 0 4 4 4 1 Antibiotic biosynthesis monooxygenase DUF4118 PF13493.1 gi|336254861|ref|YP_004597968.1| - 0.14 12.3 2.3 0.15 12.3 1.6 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4118) DUF2933 PF11666.3 gi|336254861|ref|YP_004597968.1| - 0.21 11.1 1.8 0.61 9.6 0.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2933) DUF2627 PF11118.3 gi|336254861|ref|YP_004597968.1| - 1.7 8.8 4.9 15 5.7 0.4 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2627) DUF1206 PF06724.6 gi|336254861|ref|YP_004597968.1| - 3.8 7.3 7.7 0.94 9.2 0.5 2.0 1 1 1 2 2 2 0 Domain of Unknown Function (DUF1206) Rubredoxin PF00301.15 gi|336254863|ref|YP_004597970.1| - 1.1 9.1 4.7 5.2 7.0 0.1 3.8 4 0 0 4 4 4 0 Rubredoxin zf-RING_3 PF14369.1 gi|336254863|ref|YP_004597970.1| - 3.4 7.7 6.9 3.3 7.7 2.2 2.8 2 1 1 3 3 3 0 zinc-finger GntR PF00392.16 gi|336254864|ref|YP_004597971.1| - 0.015 14.6 0.0 0.027 13.9 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_20 PF12840.2 gi|336254864|ref|YP_004597971.1| - 0.042 13.6 0.0 0.063 13.0 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_34 PF13601.1 gi|336254864|ref|YP_004597971.1| - 0.1 12.6 0.0 0.13 12.2 0.0 1.1 1 0 0 1 1 1 0 Winged helix DNA-binding domain FANCI_S1-cap PF14674.1 gi|336254864|ref|YP_004597971.1| - 0.12 12.4 0.1 0.2 11.7 0.1 1.3 1 0 0 1 1 1 0 FANCI solenoid 1 cap CCDC-167 PF15188.1 gi|336254864|ref|YP_004597971.1| - 0.12 12.3 0.1 0.26 11.2 0.0 1.5 2 0 0 2 2 2 0 Coiled-coil domain-containing protein 167 HSBP1 PF06825.7 gi|336254864|ref|YP_004597971.1| - 0.16 11.5 0.5 0.26 10.9 0.3 1.3 1 0 0 1 1 1 0 Heat shock factor binding protein 1 Sigma70_r1_1 PF03979.9 gi|336254864|ref|YP_004597971.1| - 0.25 11.3 2.3 0.26 11.2 1.1 1.4 1 1 0 1 1 1 0 Sigma-70 factor, region 1.1 GCV_T PF01571.16 gi|336254865|ref|YP_004597972.1| - 4e-40 137.4 0.0 5.7e-40 136.9 0.0 1.2 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.6 gi|336254865|ref|YP_004597972.1| - 5.5e-16 58.3 0.0 1.1e-15 57.3 0.0 1.6 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain DUF389 PF04087.9 gi|336254867|ref|YP_004597974.1| - 1.1e-31 109.6 20.5 1.1e-31 109.6 14.2 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF389) Bacteriocin_IIc PF10439.4 gi|336254868|ref|YP_004597975.1| - 0.059 13.5 6.0 0.076 13.1 4.1 1.1 1 0 0 1 1 1 0 Bacteriocin class II with double-glycine leader peptide MASE1 PF05231.9 gi|336254868|ref|YP_004597975.1| - 0.089 11.7 0.8 0.1 11.5 0.6 1.1 1 0 0 1 1 1 0 MASE1 Gly-zipper_YMGG PF13441.1 gi|336254868|ref|YP_004597975.1| - 0.41 10.1 10.9 1.3 8.5 0.9 2.2 2 0 0 2 2 2 0 YMGG-like Gly-zipper BPD_transp_2 PF02653.11 gi|336254868|ref|YP_004597975.1| - 0.47 9.3 5.1 0.53 9.2 3.5 1.0 1 0 0 1 1 1 0 Branched-chain amino acid transport system / permease component ATPase_gene1 PF09527.5 gi|336254868|ref|YP_004597975.1| - 0.68 9.7 5.9 1.1 9.1 4.1 1.3 1 0 0 1 1 1 0 Putative F0F1-ATPase subunit (ATPase_gene1) SKG6 PF08693.5 gi|336254868|ref|YP_004597975.1| - 4.5 6.6 8.0 3.6 6.9 1.3 2.8 2 1 0 2 2 2 0 Transmembrane alpha-helix domain Gly-zipper_OmpA PF13436.1 gi|336254868|ref|YP_004597975.1| - 6.1 6.5 10.2 1.5 8.5 1.0 1.8 1 1 0 2 2 2 0 Glycine-zipper containing OmpA-like membrane domain FAD_binding_4 PF01565.18 gi|336254869|ref|YP_004597976.1| - 3.4e-34 117.2 3.8 4.8e-34 116.7 2.6 1.2 1 0 0 1 1 1 1 FAD binding domain BBE PF08031.7 gi|336254869|ref|YP_004597976.1| - 3e-10 39.8 0.0 5.8e-10 38.9 0.0 1.5 1 0 0 1 1 1 1 Berberine and berberine like Titin_Z PF09042.6 gi|336254869|ref|YP_004597976.1| - 0.019 14.5 0.2 0.044 13.3 0.1 1.6 1 0 0 1 1 1 0 Titin Z Cytokin-bind PF09265.5 gi|336254869|ref|YP_004597976.1| - 0.17 10.9 0.0 0.26 10.3 0.0 1.2 1 0 0 1 1 1 0 Cytokinin dehydrogenase 1, FAD and cytokinin binding FAD_binding_3 PF01494.14 gi|336254870|ref|YP_004597977.1| - 2.5e-10 39.9 5.7 1.2e-07 31.1 1.5 3.0 2 1 0 2 2 2 2 FAD binding domain DAO PF01266.19 gi|336254870|ref|YP_004597977.1| - 1.9e-07 30.3 3.8 0.00099 18.1 0.4 2.3 2 1 0 2 2 2 2 FAD dependent oxidoreductase Lycopene_cycl PF05834.7 gi|336254870|ref|YP_004597977.1| - 3.5e-07 29.4 0.1 0.019 13.9 0.0 2.2 2 0 0 2 2 2 2 Lycopene cyclase protein Pyr_redox_2 PF07992.9 gi|336254870|ref|YP_004597977.1| - 4.4e-06 26.7 0.1 8.8e-06 25.7 0.0 1.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|336254870|ref|YP_004597977.1| - 3.7e-05 22.9 0.8 5.2e-05 22.5 0.5 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|336254870|ref|YP_004597977.1| - 0.0067 16.5 0.0 0.012 15.6 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|336254870|ref|YP_004597977.1| - 0.0096 14.8 1.1 0.031 13.1 0.2 2.0 2 0 0 2 2 2 1 FAD binding domain HI0933_like PF03486.9 gi|336254870|ref|YP_004597977.1| - 0.02 13.3 0.2 0.093 11.1 0.0 1.8 2 0 0 2 2 2 0 HI0933-like protein Trp_halogenase PF04820.9 gi|336254870|ref|YP_004597977.1| - 0.036 12.6 0.5 0.22 10.1 0.0 2.0 2 0 0 2 2 2 0 Tryptophan halogenase NAD_binding_8 PF13450.1 gi|336254870|ref|YP_004597977.1| - 0.066 13.2 0.6 0.87 9.6 0.2 2.9 2 1 0 2 2 2 0 NAD(P)-binding Rossmann-like domain DUF359 PF04019.7 gi|336254872|ref|YP_004597979.1| - 4.2e-37 126.1 0.1 5.8e-37 125.7 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF359) Spt4 PF06093.8 gi|336254873|ref|YP_004597980.1| - 9.8e-14 51.0 0.1 1.2e-13 50.7 0.1 1.1 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger DZR PF12773.2 gi|336254873|ref|YP_004597980.1| - 0.0013 18.5 0.4 0.0014 18.3 0.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon DUF35_N PF12172.3 gi|336254873|ref|YP_004597980.1| - 0.13 12.1 0.5 0.2 11.6 0.3 1.3 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Nudix_N_2 PF14803.1 gi|336254873|ref|YP_004597980.1| - 1.1 9.0 4.8 0.89 9.2 0.6 2.2 2 0 0 2 2 2 0 Nudix N-terminal zf-RanBP PF00641.13 gi|336254873|ref|YP_004597980.1| - 1.4 8.1 4.4 1.9 7.6 3.1 1.3 1 0 0 1 1 1 0 Zn-finger in Ran binding protein and others SHS2_Rpb7-N PF03876.12 gi|336254874|ref|YP_004597981.1| - 3.2e-15 55.9 0.0 5.2e-15 55.3 0.0 1.3 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.18 gi|336254874|ref|YP_004597981.1| - 8.1e-12 45.0 0.2 1.8e-11 43.9 0.1 1.6 1 0 0 1 1 1 1 S1 RNA binding domain Fcf1 PF04900.7 gi|336254875|ref|YP_004597982.1| - 2.6e-09 37.0 0.0 3.1e-09 36.8 0.0 1.1 1 0 0 1 1 1 1 Fcf1 DUF188 PF02639.9 gi|336254875|ref|YP_004597982.1| - 2.7e-07 30.1 0.1 3.7e-07 29.6 0.1 1.3 1 0 0 1 1 1 1 Uncharacterized BCR, YaiI/YqxD family COG1671 PIN PF01850.16 gi|336254875|ref|YP_004597982.1| - 0.0087 16.3 0.1 0.14 12.5 0.1 2.0 1 1 1 2 2 2 1 PIN domain PIN_3 PF13470.1 gi|336254875|ref|YP_004597982.1| - 0.054 14.1 0.9 0.096 13.3 0.6 1.5 1 1 0 1 1 1 0 PIN domain XPG_I PF00867.13 gi|336254875|ref|YP_004597982.1| - 0.086 12.9 0.1 0.15 12.1 0.0 1.3 1 0 0 1 1 1 0 XPG I-region GTP_EFTU PF00009.22 gi|336254876|ref|YP_004597983.1| - 3.9e-42 143.8 0.0 5.8e-42 143.2 0.0 1.3 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.6 gi|336254876|ref|YP_004597983.1| - 4.4e-26 90.7 0.0 8.2e-26 89.8 0.0 1.5 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU_D2 PF03144.20 gi|336254876|ref|YP_004597983.1| - 1.1e-07 31.8 1.2 3.7e-07 30.1 0.8 2.0 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|336254876|ref|YP_004597983.1| - 0.0016 18.3 0.0 0.0032 17.4 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase PduV-EutP PF10662.4 gi|336254876|ref|YP_004597983.1| - 0.012 15.0 0.2 0.11 11.9 0.0 2.2 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation FeoB_N PF02421.13 gi|336254876|ref|YP_004597983.1| - 0.058 12.6 0.4 2.8 7.2 0.3 2.5 1 1 0 1 1 1 0 Ferrous iron transport protein B MMR_HSR1_C PF08438.5 gi|336254876|ref|YP_004597983.1| - 0.09 13.0 0.0 0.16 12.2 0.0 1.3 1 0 0 1 1 1 0 GTPase of unknown function C-terminal SRPRB PF09439.5 gi|336254876|ref|YP_004597983.1| - 0.1 11.8 0.0 6.1 6.0 0.0 2.2 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit PRC PF05239.11 gi|336254878|ref|YP_004597985.1| - 0.037 13.8 0.8 0.064 13.1 0.5 1.6 1 1 0 1 1 1 0 PRC-barrel domain DUF2171 PF09939.4 gi|336254878|ref|YP_004597985.1| - 0.047 13.7 1.2 0.36 10.8 0.8 2.0 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2171) Lactamase_B_2 PF12706.2 gi|336254879|ref|YP_004597986.1| - 1.4e-18 67.1 0.1 1.9e-18 66.7 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|336254879|ref|YP_004597986.1| - 1.4e-07 31.3 3.9 2e-07 30.8 2.7 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily NTP_transf_2 PF01909.18 gi|336254880|ref|YP_004597987.1| - 0.013 15.8 0.1 0.014 15.6 0.1 1.1 1 0 0 1 1 1 0 Nucleotidyltransferase domain MNHE PF01899.11 gi|336254881|ref|YP_004597988.1| - 0.15 11.6 2.0 0.18 11.4 0.3 1.8 1 1 1 2 2 2 0 Na+/H+ ion antiporter subunit AAA PF00004.24 gi|336254882|ref|YP_004597989.1| - 9.3e-39 132.6 0.0 2.2e-38 131.4 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|336254882|ref|YP_004597989.1| - 2.9e-06 27.3 4.1 0.017 15.1 0.0 3.6 1 1 2 4 4 4 1 AAA ATPase domain AAA_17 PF13207.1 gi|336254882|ref|YP_004597989.1| - 1e-05 26.3 0.2 1e-05 26.3 0.1 3.1 2 1 0 2 2 2 1 AAA domain AAA_5 PF07728.9 gi|336254882|ref|YP_004597989.1| - 2.2e-05 24.2 0.0 0.0001 22.0 0.0 2.2 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.1 gi|336254882|ref|YP_004597989.1| - 5.1e-05 23.4 0.7 0.0039 17.3 0.2 3.0 2 1 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|336254882|ref|YP_004597989.1| - 0.00028 21.2 1.3 0.0037 17.5 0.0 2.7 3 0 0 3 3 2 1 AAA domain AAA_2 PF07724.9 gi|336254882|ref|YP_004597989.1| - 0.00032 20.6 0.4 0.0011 18.9 0.0 2.1 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) AAA_25 PF13481.1 gi|336254882|ref|YP_004597989.1| - 0.0004 19.8 0.4 0.0028 17.1 0.0 2.4 2 1 1 3 3 3 1 AAA domain RuvB_N PF05496.7 gi|336254882|ref|YP_004597989.1| - 0.0005 19.1 0.0 0.001 18.1 0.0 1.6 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_33 PF13671.1 gi|336254882|ref|YP_004597989.1| - 0.00062 19.6 0.1 0.003 17.4 0.0 2.3 2 1 0 2 2 2 1 AAA domain AAA_28 PF13521.1 gi|336254882|ref|YP_004597989.1| - 0.0011 18.9 0.2 0.0054 16.7 0.0 2.3 2 1 1 3 3 3 1 AAA domain TIP49 PF06068.8 gi|336254882|ref|YP_004597989.1| - 0.0061 15.3 0.0 0.02 13.6 0.0 1.9 2 0 0 2 2 2 1 TIP49 C-terminus MMR_HSR1 PF01926.18 gi|336254882|ref|YP_004597989.1| - 0.0074 16.2 0.0 0.017 15.0 0.0 1.7 1 0 0 1 1 1 1 50S ribosome-binding GTPase AAA_19 PF13245.1 gi|336254882|ref|YP_004597989.1| - 0.0092 15.7 0.1 0.023 14.4 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain DUF815 PF05673.8 gi|336254882|ref|YP_004597989.1| - 0.013 14.4 0.1 0.024 13.5 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_14 PF13173.1 gi|336254882|ref|YP_004597989.1| - 0.016 15.1 0.0 0.045 13.6 0.0 1.8 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|336254882|ref|YP_004597989.1| - 0.017 14.5 0.1 0.045 13.1 0.0 1.9 1 1 0 1 1 1 0 IstB-like ATP binding protein Zeta_toxin PF06414.7 gi|336254882|ref|YP_004597989.1| - 0.024 13.7 0.0 0.056 12.5 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin ResIII PF04851.10 gi|336254882|ref|YP_004597989.1| - 0.038 13.8 0.0 0.065 13.0 0.0 1.5 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit T2SE PF00437.15 gi|336254882|ref|YP_004597989.1| - 0.038 12.8 0.0 0.099 11.5 0.0 1.6 1 0 0 1 1 1 0 Type II/IV secretion system protein Mg_chelatase PF01078.16 gi|336254882|ref|YP_004597989.1| - 0.039 13.1 0.0 0.071 12.2 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_3 PF07726.6 gi|336254882|ref|YP_004597989.1| - 0.041 13.4 0.2 0.1 12.2 0.0 1.8 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.17 gi|336254882|ref|YP_004597989.1| - 0.042 14.0 0.0 0.08 13.1 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_11 PF13086.1 gi|336254882|ref|YP_004597989.1| - 0.052 13.1 0.0 0.083 12.4 0.0 1.5 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|336254882|ref|YP_004597989.1| - 0.054 13.7 0.0 0.26 11.6 0.0 2.2 2 1 0 2 2 2 0 ABC transporter NACHT PF05729.7 gi|336254882|ref|YP_004597989.1| - 0.13 11.9 0.1 5.2 6.6 0.0 2.3 1 1 1 2 2 2 0 NACHT domain Usp PF00582.21 gi|336254883|ref|YP_004597990.1| - 7.2e-17 61.8 0.1 9.2e-17 61.5 0.0 1.1 1 0 0 1 1 1 1 Universal stress protein family SBP_bac_5 PF00496.17 gi|336254883|ref|YP_004597990.1| - 0.0091 14.8 0.0 0.01 14.6 0.0 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle FMN_red PF03358.10 gi|336254883|ref|YP_004597990.1| - 0.15 11.5 0.0 0.22 11.0 0.0 1.3 1 0 0 1 1 1 0 NADPH-dependent FMN reductase Acetyltransf_1 PF00583.19 gi|336254884|ref|YP_004597991.1| - 9.4e-18 64.0 0.0 1.3e-17 63.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.1 gi|336254884|ref|YP_004597991.1| - 5.5e-10 39.5 0.0 6.8e-10 39.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|336254884|ref|YP_004597991.1| - 9.4e-10 38.6 0.0 1.2e-09 38.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|336254884|ref|YP_004597991.1| - 1.5e-08 34.7 0.0 2e-08 34.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|336254884|ref|YP_004597991.1| - 3.1e-08 33.6 0.0 4.5e-08 33.1 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|336254884|ref|YP_004597991.1| - 4.6e-06 26.3 0.0 6.9e-06 25.7 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.1 gi|336254884|ref|YP_004597991.1| - 2.8e-05 23.9 0.0 5.4e-05 23.0 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|336254884|ref|YP_004597991.1| - 0.00073 19.4 0.0 0.00088 19.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Usp PF00582.21 gi|336254885|ref|YP_004597992.1| - 1e-11 45.2 2.5 2.2e-11 44.1 1.7 1.6 1 1 0 1 1 1 1 Universal stress protein family Usp PF00582.21 gi|336254886|ref|YP_004597993.1| - 1.1e-34 119.5 6.9 1.4e-34 119.2 4.8 1.1 1 0 0 1 1 1 1 Universal stress protein family DHHA1 PF02272.14 gi|336254887|ref|YP_004597994.1| - 0.0023 17.5 0.1 0.0083 15.8 0.0 2.0 1 0 0 1 1 1 1 DHHA1 domain PGM_PMM_II PF02879.11 gi|336254887|ref|YP_004597994.1| - 0.005 17.1 0.2 0.025 14.9 0.1 2.3 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DrsE PF02635.10 gi|336254887|ref|YP_004597994.1| - 0.042 13.9 0.0 0.09 12.8 0.0 1.5 1 0 0 1 1 1 0 DsrE/DsrF-like family CoA_binding_2 PF13380.1 gi|336254887|ref|YP_004597994.1| - 0.2 11.7 1.3 1.2 9.2 0.3 2.7 2 1 0 2 2 2 0 CoA binding domain TFIIB PF00382.14 gi|336254888|ref|YP_004597995.1| - 5.2e-45 151.1 2.8 1.1e-22 79.5 0.2 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|336254888|ref|YP_004597995.1| - 1e-15 56.7 2.3 1.7e-15 56.0 1.6 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding Cyclin_N PF00134.18 gi|336254888|ref|YP_004597995.1| - 0.0022 17.5 0.1 0.0084 15.6 0.0 2.0 2 0 0 2 2 2 1 Cyclin, N-terminal domain A2L_zn_ribbon PF08792.5 gi|336254888|ref|YP_004597995.1| - 0.0072 15.7 1.1 0.023 14.1 0.7 1.9 1 1 0 1 1 1 1 A2L zinc ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|336254888|ref|YP_004597995.1| - 0.028 14.1 2.7 0.057 13.2 1.9 1.5 1 0 0 1 1 1 0 PhnA Zinc-Ribbon Zn_Tnp_IS1595 PF12760.2 gi|336254888|ref|YP_004597995.1| - 0.039 13.7 0.1 0.09 12.6 0.1 1.6 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Sigma70_r4 PF04545.11 gi|336254888|ref|YP_004597995.1| - 0.049 12.9 3.1 0.17 11.1 0.1 3.1 3 1 0 3 3 3 0 Sigma-70, region 4 Ribosomal_S27e PF01667.12 gi|336254888|ref|YP_004597995.1| - 0.051 13.1 0.4 0.11 12.0 0.3 1.4 1 0 0 1 1 1 0 Ribosomal protein S27 DZR PF12773.2 gi|336254888|ref|YP_004597995.1| - 0.057 13.2 1.0 0.16 11.8 0.7 1.7 1 0 0 1 1 1 0 Double zinc ribbon OrfB_Zn_ribbon PF07282.6 gi|336254888|ref|YP_004597995.1| - 0.06 13.0 1.2 0.13 11.8 0.5 1.8 2 0 0 2 2 2 0 Putative transposase DNA-binding domain HTH_23 PF13384.1 gi|336254888|ref|YP_004597995.1| - 0.35 10.5 0.1 0.35 10.5 0.1 2.9 3 0 0 3 3 3 0 Homeodomain-like domain TrmB PF01978.14 gi|336254888|ref|YP_004597995.1| - 0.79 9.4 3.1 3.3 7.4 0.1 2.9 3 0 0 3 3 3 0 Sugar-specific transcriptional regulator TrmB Zn-ribbon_8 PF09723.5 gi|336254888|ref|YP_004597995.1| - 0.8 9.7 4.8 1.5 8.8 0.5 2.5 1 1 1 2 2 2 0 Zinc ribbon domain Bax1-I PF01027.15 gi|336254889|ref|YP_004597996.1| - 5.4e-05 22.8 23.2 7.4e-05 22.4 16.1 1.2 1 0 0 1 1 1 1 Inhibitor of apoptosis-promoting Bax1 Cation_ATPase_C PF00689.16 gi|336254889|ref|YP_004597996.1| - 0.31 10.5 13.8 1.1 8.8 6.8 2.7 2 1 0 2 2 2 0 Cation transporting ATPase, C-terminus Herpes_LMP1 PF05297.6 gi|336254889|ref|YP_004597996.1| - 3.6 6.4 5.2 0.99 8.2 1.3 1.7 2 0 0 2 2 2 0 Herpesvirus latent membrane protein 1 (LMP1) GtrA PF04138.9 gi|336254889|ref|YP_004597996.1| - 5.8 6.8 17.7 0.84 9.6 8.0 2.3 2 0 0 2 2 2 0 GtrA-like protein MCPsignal PF00015.16 gi|336254891|ref|YP_004597998.1| - 2.4e-52 177.5 54.1 1e-48 165.7 23.5 2.5 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain Laminin_II PF06009.7 gi|336254891|ref|YP_004597998.1| - 0.00066 19.4 34.7 0.011 15.5 4.3 5.1 2 2 3 5 5 5 3 Laminin Domain II FH2 PF02181.18 gi|336254891|ref|YP_004597998.1| - 0.0022 16.9 4.0 0.0022 16.9 2.7 3.3 1 1 1 3 3 3 2 Formin Homology 2 Domain DUF4200 PF13863.1 gi|336254891|ref|YP_004597998.1| - 0.0088 15.9 8.4 0.0088 15.9 5.8 3.9 2 2 2 4 4 4 2 Domain of unknown function (DUF4200) Laminin_I PF06008.9 gi|336254891|ref|YP_004597998.1| - 0.011 15.0 5.6 0.011 15.0 3.9 5.0 3 2 2 5 5 5 0 Laminin Domain I IncA PF04156.9 gi|336254891|ref|YP_004597998.1| - 0.012 15.1 5.1 0.012 15.1 3.5 3.7 2 1 1 4 4 4 0 IncA protein CorA PF01544.13 gi|336254891|ref|YP_004597998.1| - 0.015 14.3 22.2 0.12 11.4 2.0 3.3 2 1 1 3 3 3 0 CorA-like Mg2+ transporter protein Mnd1 PF03962.10 gi|336254891|ref|YP_004597998.1| - 0.016 14.8 31.1 0.35 10.5 2.8 3.4 2 1 1 3 3 3 0 Mnd1 family AAA_13 PF13166.1 gi|336254891|ref|YP_004597998.1| - 0.035 12.5 29.0 0.074 11.4 10.2 2.2 1 1 1 2 2 2 0 AAA domain Spc7 PF08317.6 gi|336254891|ref|YP_004597998.1| - 0.046 12.3 24.9 0.37 9.4 1.9 3.4 1 1 3 4 4 4 0 Spc7 kinetochore protein Sec5 PF15469.1 gi|336254891|ref|YP_004597998.1| - 0.11 12.2 5.8 0.52 10.0 3.7 2.4 1 1 0 1 1 1 0 Exocyst complex component Sec5 DUF948 PF06103.6 gi|336254891|ref|YP_004597998.1| - 0.25 11.2 27.6 0.99 9.3 0.6 4.6 2 2 2 4 4 4 0 Bacterial protein of unknown function (DUF948) Med30 PF11315.3 gi|336254891|ref|YP_004597998.1| - 0.27 11.3 2.5 0.4 10.7 0.4 2.2 2 0 0 2 2 2 0 Mediator complex subunit 30 DUF1664 PF07889.7 gi|336254891|ref|YP_004597998.1| - 0.44 10.3 29.3 0.074 12.8 1.1 4.8 3 2 2 5 5 5 0 Protein of unknown function (DUF1664) TPR_MLP1_2 PF07926.7 gi|336254891|ref|YP_004597998.1| - 0.61 9.8 34.6 0.29 10.8 4.8 3.6 2 1 1 3 3 3 0 TPR/MLP1/MLP2-like protein BLOC1_2 PF10046.4 gi|336254891|ref|YP_004597998.1| - 2 8.6 30.7 1.3 9.2 1.4 5.0 2 2 1 4 4 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DASH_Duo1 PF08651.5 gi|336254891|ref|YP_004597998.1| - 3.5 7.2 11.3 2.2 7.9 0.1 4.2 4 1 1 5 5 5 0 DASH complex subunit Duo1 Syntaxin PF00804.20 gi|336254891|ref|YP_004597998.1| - 3.9 7.6 26.5 2.1 8.5 2.8 4.7 1 1 3 4 4 4 0 Syntaxin Prominin PF05478.6 gi|336254891|ref|YP_004597998.1| - 4.3 4.7 13.2 6.5 4.1 9.1 1.4 1 0 0 1 1 1 0 Prominin V_ATPase_I PF01496.14 gi|336254891|ref|YP_004597998.1| - 4.5 5.0 22.6 15 3.2 13.2 2.7 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family FlaC_arch PF05377.6 gi|336254891|ref|YP_004597998.1| - 5.8 6.9 23.6 0.62 10.0 0.4 5.3 5 0 0 5 5 5 0 Flagella accessory protein C (FlaC) APG17 PF04108.7 gi|336254891|ref|YP_004597998.1| - 6.6 5.4 24.5 0.19 10.4 1.9 3.7 1 1 1 3 3 3 0 Autophagy protein Apg17 DUF677 PF05055.7 gi|336254891|ref|YP_004597998.1| - 7.6 5.0 26.1 0.028 13.0 4.5 3.0 2 1 1 3 3 3 0 Protein of unknown function (DUF677) CheW PF01584.14 gi|336254892|ref|YP_004597999.1| - 1e-25 89.8 0.1 1.2e-25 89.6 0.1 1.0 1 0 0 1 1 1 1 CheW-like domain MCPsignal PF00015.16 gi|336254893|ref|YP_004598000.1| - 3e-45 154.4 44.8 1.7e-43 148.6 19.5 3.0 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain PAS_9 PF13426.1 gi|336254893|ref|YP_004598000.1| - 6.9e-13 48.8 2.2 3e-12 46.8 0.0 3.0 4 0 0 4 4 3 1 PAS domain PAS PF00989.19 gi|336254893|ref|YP_004598000.1| - 9.7e-13 47.8 0.0 3.1e-12 46.2 0.0 1.9 1 0 0 1 1 1 1 PAS fold PAS_4 PF08448.5 gi|336254893|ref|YP_004598000.1| - 5.5e-12 45.6 1.8 1.2e-10 41.4 1.3 3.1 1 1 0 1 1 1 1 PAS fold PAS_8 PF13188.1 gi|336254893|ref|YP_004598000.1| - 2.2e-06 27.3 0.0 0.0001 22.0 0.0 2.8 2 0 0 2 2 2 1 PAS domain Spc7 PF08317.6 gi|336254893|ref|YP_004598000.1| - 0.00019 20.2 19.5 0.021 13.4 4.9 3.2 1 1 3 4 4 4 2 Spc7 kinetochore protein DUF948 PF06103.6 gi|336254893|ref|YP_004598000.1| - 0.0002 21.1 27.7 0.0025 17.6 3.5 4.6 2 2 2 4 4 4 2 Bacterial protein of unknown function (DUF948) AAA_13 PF13166.1 gi|336254893|ref|YP_004598000.1| - 0.001 17.6 16.7 0.0035 15.9 8.9 2.2 1 1 1 2 2 2 1 AAA domain DUF3450 PF11932.3 gi|336254893|ref|YP_004598000.1| - 0.0021 17.4 10.1 0.0021 17.4 7.0 3.0 1 1 2 3 3 3 1 Protein of unknown function (DUF3450) EzrA PF06160.7 gi|336254893|ref|YP_004598000.1| - 0.0047 15.1 20.1 0.011 13.8 7.7 2.3 2 0 0 2 2 2 2 Septation ring formation regulator, EzrA Mod_r PF07200.8 gi|336254893|ref|YP_004598000.1| - 0.0068 16.3 13.9 1.9 8.4 0.1 3.6 2 2 1 3 3 3 1 Modifier of rudimentary (Mod(r)) protein HAMP PF00672.20 gi|336254893|ref|YP_004598000.1| - 0.0069 16.5 1.0 0.0069 16.5 0.7 4.6 5 0 0 5 5 4 1 HAMP domain Seryl_tRNA_N PF02403.17 gi|336254893|ref|YP_004598000.1| - 0.0084 16.1 19.4 0.032 14.2 0.3 4.3 2 2 1 4 4 4 1 Seryl-tRNA synthetase N-terminal domain Baculo_PEP_C PF04513.7 gi|336254893|ref|YP_004598000.1| - 0.0084 15.9 18.9 0.037 13.8 3.8 3.5 2 1 1 3 3 3 1 Baculovirus polyhedron envelope protein, PEP, C terminus Laminin_II PF06009.7 gi|336254893|ref|YP_004598000.1| - 0.0091 15.7 29.8 0.015 15.0 2.6 4.6 2 2 1 4 4 4 1 Laminin Domain II IncA PF04156.9 gi|336254893|ref|YP_004598000.1| - 0.033 13.7 20.8 0.059 12.9 9.0 3.0 1 1 2 3 3 3 0 IncA protein DUF745 PF05335.8 gi|336254893|ref|YP_004598000.1| - 0.04 13.4 32.1 0.078 12.4 6.8 3.3 1 1 1 3 3 3 0 Protein of unknown function (DUF745) Ferritin PF00210.19 gi|336254893|ref|YP_004598000.1| - 0.041 13.6 18.4 0.1 12.3 3.6 3.3 1 1 2 3 3 3 0 Ferritin-like domain COG2 PF06148.6 gi|336254893|ref|YP_004598000.1| - 0.049 13.4 21.0 0.25 11.2 0.4 4.7 2 2 2 4 4 4 0 COG (conserved oligomeric Golgi) complex component, COG2 APG17 PF04108.7 gi|336254893|ref|YP_004598000.1| - 0.073 11.8 22.1 0.013 14.3 2.3 3.3 1 1 2 3 3 3 0 Autophagy protein Apg17 Fib_alpha PF08702.5 gi|336254893|ref|YP_004598000.1| - 0.093 12.8 13.1 0.55 10.3 4.1 3.6 3 1 1 4 4 4 0 Fibrinogen alpha/beta chain family V_ATPase_I PF01496.14 gi|336254893|ref|YP_004598000.1| - 0.12 10.2 15.2 0.86 7.3 10.5 2.1 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF677 PF05055.7 gi|336254893|ref|YP_004598000.1| - 0.13 10.8 18.5 0.14 10.7 2.3 2.9 2 1 1 3 3 3 0 Protein of unknown function (DUF677) DUF489 PF04356.7 gi|336254893|ref|YP_004598000.1| - 0.28 10.7 7.0 0.069 12.7 2.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF489) TMP_2 PF06791.8 gi|336254893|ref|YP_004598000.1| - 0.32 10.5 25.7 0.21 11.1 3.6 3.7 1 1 3 4 4 4 0 Prophage tail length tape measure protein APG6 PF04111.7 gi|336254893|ref|YP_004598000.1| - 0.41 9.6 19.2 0.067 12.2 7.4 2.4 2 1 1 3 3 3 0 Autophagy protein Apg6 Reo_sigmaC PF04582.7 gi|336254893|ref|YP_004598000.1| - 0.42 9.7 26.4 0.83 8.7 2.4 3.1 1 1 3 4 4 4 0 Reovirus sigma C capsid protein WXG100 PF06013.7 gi|336254893|ref|YP_004598000.1| - 0.66 10.0 27.4 0.24 11.4 2.2 6.6 1 1 7 8 8 8 0 Proteins of 100 residues with WXG Herpes_U30 PF04523.8 gi|336254893|ref|YP_004598000.1| - 1.1 6.6 5.8 0.97 6.8 3.0 1.6 2 0 0 2 2 2 0 Herpes virus tegument protein U30 FlgN PF05130.7 gi|336254893|ref|YP_004598000.1| - 1.1 9.5 24.5 3 8.0 3.0 3.8 1 1 3 4 4 4 0 FlgN protein IFT57 PF10498.4 gi|336254893|ref|YP_004598000.1| - 1.7 7.2 16.0 2.7 6.6 7.8 2.4 1 1 1 2 2 2 0 Intra-flagellar transport protein 57 COG5 PF10392.4 gi|336254893|ref|YP_004598000.1| - 2 8.3 6.7 5 7.1 1.0 3.3 2 2 2 4 4 4 0 Golgi transport complex subunit 5 Cytochrom_B562 PF07361.6 gi|336254893|ref|YP_004598000.1| - 2.1 8.8 19.4 0.096 13.0 1.0 3.8 3 1 1 4 4 3 0 Cytochrome b562 AATF-Che1 PF13339.1 gi|336254893|ref|YP_004598000.1| - 2.2 8.4 13.9 24 5.1 5.6 3.7 1 1 1 2 2 2 0 Apoptosis antagonizing transcription factor Atg14 PF10186.4 gi|336254893|ref|YP_004598000.1| - 2.3 7.1 8.4 0.75 8.6 3.2 2.0 1 1 2 3 3 3 0 UV radiation resistance protein and autophagy-related subunit 14 DUF2580 PF10824.3 gi|336254893|ref|YP_004598000.1| - 2.3 8.5 41.0 0.78 10.1 4.3 5.9 3 3 2 5 5 5 0 Protein of unknown function (DUF2580) DinB PF05163.7 gi|336254893|ref|YP_004598000.1| - 2.9 7.5 9.8 3.6 7.2 0.1 2.7 2 1 0 2 2 2 0 DinB family DUF1664 PF07889.7 gi|336254893|ref|YP_004598000.1| - 4 7.2 25.7 5.3 6.8 0.4 4.5 2 2 3 5 5 5 0 Protein of unknown function (DUF1664) YtxH PF12732.2 gi|336254893|ref|YP_004598000.1| - 4.3 7.7 23.6 5.7e+02 0.9 6.3 5.4 1 1 1 2 2 1 0 YtxH-like protein GAS PF13851.1 gi|336254893|ref|YP_004598000.1| - 4.5 6.4 15.4 8 5.6 0.4 3.2 1 1 1 3 3 3 0 Growth-arrest specific micro-tubule binding TMF_DNA_bd PF12329.3 gi|336254893|ref|YP_004598000.1| - 4.5 7.1 18.7 0.45 10.3 1.3 4.0 3 1 2 5 5 3 0 TATA element modulatory factor 1 DNA binding Syntaxin PF00804.20 gi|336254893|ref|YP_004598000.1| - 5.1 7.3 26.2 12 6.1 2.0 4.8 2 2 1 3 3 3 0 Syntaxin GP41 PF00517.12 gi|336254893|ref|YP_004598000.1| - 5.2 6.5 7.4 3.8 7.0 0.1 3.0 2 1 2 4 4 4 0 Retroviral envelope protein BLOC1_2 PF10046.4 gi|336254893|ref|YP_004598000.1| - 6.1 7.0 22.8 6.6 6.9 3.6 4.5 3 2 1 4 4 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 HAUS-augmin3 PF14932.1 gi|336254893|ref|YP_004598000.1| - 6.4 5.8 16.7 0.8 8.8 3.9 3.3 1 1 3 4 4 4 0 HAUS augmin-like complex subunit 3 ING PF12998.2 gi|336254893|ref|YP_004598000.1| - 7.3 6.9 12.1 29 5.0 3.8 3.6 1 1 3 4 4 4 0 Inhibitor of growth proteins N-terminal histone-binding NPV_P10 PF05531.7 gi|336254893|ref|YP_004598000.1| - 8.4 6.7 35.0 0.2 11.9 0.9 6.3 2 2 2 5 5 5 0 Nucleopolyhedrovirus P10 protein DUF2317 PF10079.4 gi|336254893|ref|YP_004598000.1| - 8.9 4.7 11.6 1.5 7.2 4.3 2.1 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2317) IFT20 PF14931.1 gi|336254893|ref|YP_004598000.1| - 9.1 6.2 15.4 2.7 7.9 5.0 3.5 2 2 1 3 3 3 0 Intraflagellar transport complex B, subunit 20 Tweety PF04906.8 gi|336254893|ref|YP_004598000.1| - 9.4 4.5 10.1 8.1 4.7 2.3 2.8 2 1 1 3 3 3 0 Tweety CheW PF01584.14 gi|336254894|ref|YP_004598001.1| - 3.9e-23 81.4 0.2 6e-23 80.8 0.1 1.3 1 0 0 1 1 1 1 CheW-like domain CbiA PF01656.18 gi|336254895|ref|YP_004598002.1| - 2.6e-33 115.0 0.0 3.3e-33 114.7 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|336254895|ref|YP_004598002.1| - 1.4e-13 51.1 0.0 2.5e-13 50.2 0.0 1.5 1 1 0 1 1 1 1 AAA domain MipZ PF09140.6 gi|336254895|ref|YP_004598002.1| - 3.5e-09 36.1 0.4 6.1e-06 25.5 0.0 2.4 2 1 0 2 2 2 2 ATPase MipZ ArsA_ATPase PF02374.10 gi|336254895|ref|YP_004598002.1| - 2.7e-07 29.9 0.1 8.7e-07 28.2 0.0 1.8 1 1 0 1 1 1 1 Anion-transporting ATPase Fer4_NifH PF00142.13 gi|336254895|ref|YP_004598002.1| - 5.1e-05 22.5 0.0 0.00036 19.8 0.0 2.0 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ATP_bind_1 PF03029.12 gi|336254895|ref|YP_004598002.1| - 5.1e-05 22.9 0.3 0.084 12.3 0.0 2.3 2 1 0 2 2 2 2 Conserved hypothetical ATP binding protein YhjQ PF06564.7 gi|336254895|ref|YP_004598002.1| - 6.6e-05 22.3 0.1 0.0036 16.6 0.0 2.2 2 0 0 2 2 2 1 YhjQ protein AAA_17 PF13207.1 gi|336254895|ref|YP_004598002.1| - 0.0018 19.0 0.0 0.075 13.8 0.0 2.6 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|336254895|ref|YP_004598002.1| - 0.0027 17.1 0.2 0.017 14.4 0.1 2.1 1 1 0 1 1 1 1 AAA domain MobB PF03205.9 gi|336254895|ref|YP_004598002.1| - 0.032 13.9 0.0 0.13 12.0 0.0 2.1 2 1 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_18 PF13238.1 gi|336254895|ref|YP_004598002.1| - 0.033 14.4 0.2 0.21 11.8 0.0 2.3 2 1 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|336254895|ref|YP_004598002.1| - 0.035 13.8 0.0 0.091 12.5 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain VirC1 PF07015.6 gi|336254895|ref|YP_004598002.1| - 0.044 12.8 0.1 0.15 11.0 0.0 1.8 2 0 0 2 2 2 0 VirC1 protein Thymidylate_kin PF02223.12 gi|336254895|ref|YP_004598002.1| - 0.045 13.1 0.1 1.5 8.1 0.0 2.2 2 0 0 2 2 2 0 Thymidylate kinase AAA_24 PF13479.1 gi|336254895|ref|YP_004598002.1| - 0.072 12.6 0.0 0.21 11.1 0.0 1.7 1 1 1 2 2 2 0 AAA domain SRP54 PF00448.17 gi|336254895|ref|YP_004598002.1| - 0.077 12.4 0.1 0.28 10.6 0.0 1.8 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_16 PF13191.1 gi|336254895|ref|YP_004598002.1| - 0.1 12.5 0.0 0.4 10.6 0.0 1.9 1 1 1 2 2 2 0 AAA ATPase domain LpxK PF02606.9 gi|336254895|ref|YP_004598002.1| - 0.11 11.4 0.1 0.31 9.9 0.0 1.6 2 0 0 2 2 2 0 Tetraacyldisaccharide-1-P 4'-kinase AAA_22 PF13401.1 gi|336254895|ref|YP_004598002.1| - 0.13 12.4 0.0 2 8.5 0.0 2.2 2 1 0 2 2 2 0 AAA domain CheB_methylest PF01339.12 gi|336254897|ref|YP_004598004.1| - 8.5e-56 188.2 1.3 8.5e-56 188.2 0.9 1.7 2 0 0 2 2 2 1 CheB methylesterase Response_reg PF00072.19 gi|336254897|ref|YP_004598004.1| - 2.3e-21 75.8 0.2 5.2e-21 74.7 0.2 1.6 1 0 0 1 1 1 1 Response regulator receiver domain DUF2023 PF09633.5 gi|336254897|ref|YP_004598004.1| - 0.018 14.9 0.0 2.4 8.1 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2023) HATPase_c PF02518.21 gi|336254898|ref|YP_004598005.1| - 5.5e-23 80.8 2.0 8.5e-23 80.1 0.3 2.3 3 0 0 3 3 3 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CheW PF01584.14 gi|336254898|ref|YP_004598005.1| - 1.3e-20 73.2 0.8 3.5e-20 71.8 0.6 1.8 1 0 0 1 1 1 1 CheW-like domain Hpt PF01627.18 gi|336254898|ref|YP_004598005.1| - 9.9e-20 70.3 0.0 9.9e-20 70.3 0.0 2.7 3 1 1 4 4 4 1 Hpt domain H-kinase_dim PF02895.9 gi|336254898|ref|YP_004598005.1| - 5.3e-11 42.6 4.1 2.2e-10 40.7 2.8 2.1 1 0 0 1 1 1 1 Signal transducing histidine kinase, homodimeric domain HATPase_c_3 PF13589.1 gi|336254898|ref|YP_004598005.1| - 0.0013 18.3 0.0 0.0043 16.7 0.0 1.9 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase P2 PF07194.6 gi|336254898|ref|YP_004598005.1| - 0.0022 17.8 0.3 0.043 13.6 0.0 3.1 2 0 0 2 2 2 1 P2 response regulator binding domain HATPase_c_2 PF13581.1 gi|336254898|ref|YP_004598005.1| - 0.013 15.3 1.2 0.023 14.4 0.1 2.1 2 0 0 2 2 2 0 Histidine kinase-like ATPase domain Sigma70_ner PF04546.8 gi|336254898|ref|YP_004598005.1| - 0.25 10.9 17.3 0.048 13.2 0.6 2.8 2 0 0 2 2 2 0 Sigma-70, non-essential region Response_reg PF00072.19 gi|336254899|ref|YP_004598006.1| - 2e-28 98.6 1.1 2.3e-28 98.4 0.7 1.0 1 0 0 1 1 1 1 Response regulator receiver domain DUF3372 PF11852.3 gi|336254899|ref|YP_004598006.1| - 0.012 14.7 0.1 0.014 14.5 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3372) CheC PF04509.7 gi|336254900|ref|YP_004598007.1| - 5.1e-21 74.1 0.4 1e-08 34.7 0.0 3.5 3 0 0 3 3 3 2 CheC-like family CheX PF13690.1 gi|336254900|ref|YP_004598007.1| - 2.6e-13 49.6 0.0 3.9e-06 26.6 0.0 2.4 2 0 0 2 2 2 2 Chemotaxis phosphatase CheX CheF-arch PF04283.7 gi|336254901|ref|YP_004598008.1| - 1.8e-39 135.2 0.2 2.4e-39 134.8 0.1 1.1 1 0 0 1 1 1 1 Chemotaxis signal transduction system protein F from archaea HTH_45 PF14947.1 gi|336254901|ref|YP_004598008.1| - 0.016 15.0 0.0 0.031 14.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix bPH_3 PF14470.1 gi|336254901|ref|YP_004598008.1| - 0.064 13.5 0.0 0.16 12.2 0.0 1.7 1 0 0 1 1 1 0 Bacterial PH domain T2SE PF00437.15 gi|336254902|ref|YP_004598009.1| - 1.7e-43 148.4 0.0 2.8e-43 147.8 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|336254902|ref|YP_004598009.1| - 0.00038 19.9 0.1 0.00079 18.9 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_tran PF00005.22 gi|336254902|ref|YP_004598009.1| - 0.0047 17.2 0.0 0.034 14.4 0.0 2.3 2 1 0 2 2 2 1 ABC transporter AAA_16 PF13191.1 gi|336254902|ref|YP_004598009.1| - 0.0083 16.1 0.0 0.054 13.4 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.1 gi|336254902|ref|YP_004598009.1| - 0.013 15.7 0.5 0.76 10.0 0.0 2.5 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.1 gi|336254902|ref|YP_004598009.1| - 0.048 13.8 0.0 0.12 12.4 0.0 1.7 1 0 0 1 1 1 0 AAA domain Dynamin_N PF00350.18 gi|336254902|ref|YP_004598009.1| - 0.051 13.4 0.0 0.12 12.1 0.0 1.7 1 0 0 1 1 1 0 Dynamin family AIG1 PF04548.11 gi|336254902|ref|YP_004598009.1| - 0.071 12.2 0.0 0.2 10.7 0.0 1.8 1 0 0 1 1 1 0 AIG1 family MobB PF03205.9 gi|336254902|ref|YP_004598009.1| - 0.075 12.7 0.0 0.15 11.7 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_10 PF12846.2 gi|336254902|ref|YP_004598009.1| - 0.081 12.3 0.2 0.61 9.4 0.0 2.3 3 0 0 3 3 3 0 AAA-like domain FtsK_SpoIIIE PF01580.13 gi|336254902|ref|YP_004598009.1| - 0.12 11.8 0.0 0.25 10.8 0.0 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family KaiC PF06745.8 gi|336254903|ref|YP_004598010.1| - 4.4e-15 55.4 0.2 6.7e-15 54.8 0.1 1.2 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|336254903|ref|YP_004598010.1| - 3.8e-08 32.9 0.0 5.3e-08 32.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain UPF0079 PF02367.12 gi|336254903|ref|YP_004598010.1| - 9.3e-06 25.2 0.0 0.00014 21.4 0.0 2.4 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 AAA_16 PF13191.1 gi|336254903|ref|YP_004598010.1| - 0.00042 20.3 0.1 0.00081 19.4 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain NACHT PF05729.7 gi|336254903|ref|YP_004598010.1| - 0.0022 17.6 0.3 0.018 14.7 0.2 2.2 1 1 0 1 1 1 1 NACHT domain Rad51 PF08423.6 gi|336254903|ref|YP_004598010.1| - 0.0037 16.2 0.1 0.022 13.6 0.0 1.9 2 0 0 2 2 2 1 Rad51 AAA_22 PF13401.1 gi|336254903|ref|YP_004598010.1| - 0.011 15.8 0.4 0.033 14.3 0.3 1.8 1 1 0 1 1 1 0 AAA domain TIP49 PF06068.8 gi|336254903|ref|YP_004598010.1| - 0.011 14.4 0.0 1.6 7.3 0.0 2.2 2 0 0 2 2 2 0 TIP49 C-terminus SRP54 PF00448.17 gi|336254903|ref|YP_004598010.1| - 0.016 14.6 0.1 0.099 12.0 0.1 2.1 1 1 0 1 1 1 0 SRP54-type protein, GTPase domain APS_kinase PF01583.15 gi|336254903|ref|YP_004598010.1| - 0.036 13.7 0.2 0.2 11.3 0.0 2.0 2 0 0 2 2 2 0 Adenylylsulphate kinase AAA PF00004.24 gi|336254903|ref|YP_004598010.1| - 0.049 13.8 0.3 0.13 12.4 0.2 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) MipZ PF09140.6 gi|336254903|ref|YP_004598010.1| - 0.06 12.4 0.0 0.1 11.6 0.0 1.3 1 0 0 1 1 1 0 ATPase MipZ IstB_IS21 PF01695.12 gi|336254903|ref|YP_004598010.1| - 0.066 12.6 0.0 0.13 11.6 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein PAXNEB PF05625.6 gi|336254903|ref|YP_004598010.1| - 0.13 11.1 0.1 0.47 9.2 0.0 1.8 2 0 0 2 2 2 0 PAXNEB protein FF PF01846.14 gi|336254903|ref|YP_004598010.1| - 0.13 12.2 0.1 0.29 11.1 0.0 1.6 1 0 0 1 1 1 0 FF domain FlaC_arch PF05377.6 gi|336254904|ref|YP_004598011.1| - 9.8e-20 70.2 4.5 1.8e-19 69.3 3.1 1.4 1 0 0 1 1 1 1 Flagella accessory protein C (FlaC) Arch_fla_DE PF04659.8 gi|336254904|ref|YP_004598011.1| - 1.4e-18 66.5 0.0 2.9e-18 65.5 0.0 1.5 1 0 0 1 1 1 1 Archaeal flagella protein CcmH PF03918.9 gi|336254904|ref|YP_004598011.1| - 0.03 13.3 0.0 0.049 12.6 0.0 1.2 1 0 0 1 1 1 0 Cytochrome C biogenesis protein CENP-F_leu_zip PF10473.4 gi|336254904|ref|YP_004598011.1| - 0.042 13.7 1.2 0.073 12.9 0.8 1.3 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF904 PF06005.7 gi|336254904|ref|YP_004598011.1| - 0.069 13.4 0.5 0.12 12.6 0.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF904) IncA PF04156.9 gi|336254904|ref|YP_004598011.1| - 0.078 12.5 0.2 0.12 11.9 0.1 1.2 1 0 0 1 1 1 0 IncA protein TBPIP PF07106.8 gi|336254904|ref|YP_004598011.1| - 0.45 10.0 2.6 0.17 11.4 0.1 1.5 2 0 0 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) T2SF PF00482.18 gi|336254907|ref|YP_004598014.1| - 4.7e-16 58.8 1.8 1.5e-12 47.5 0.3 3.8 5 0 0 5 5 5 2 Type II secretion system (T2SS), protein F AAA_32 PF13654.1 gi|336254907|ref|YP_004598014.1| - 0.014 14.0 0.5 0.022 13.4 0.3 1.2 1 0 0 1 1 1 0 AAA domain DUF3865 PF12981.2 gi|336254907|ref|YP_004598014.1| - 0.074 12.8 0.1 1 9.1 0.0 2.2 2 0 0 2 2 2 0 Domain of Unknown Function with PDB structure (DUF3865) DUF599 PF04654.7 gi|336254907|ref|YP_004598014.1| - 9.5 5.3 11.4 0.065 12.3 1.8 1.8 2 0 0 2 2 2 0 Protein of unknown function, DUF599 Arch_fla_DE PF04659.8 gi|336254908|ref|YP_004598015.1| - 3.3e-20 71.7 0.0 6.7e-20 70.7 0.0 1.5 1 0 0 1 1 1 1 Archaeal flagella protein FlaC_arch PF05377.6 gi|336254908|ref|YP_004598015.1| - 1.4e-16 60.0 1.2 3e-16 59.0 0.9 1.6 1 0 0 1 1 1 1 Flagella accessory protein C (FlaC) Syntaxin PF00804.20 gi|336254908|ref|YP_004598015.1| - 0.059 13.5 0.3 0.14 12.3 0.2 1.6 1 0 0 1 1 1 0 Syntaxin Prefoldin PF02996.12 gi|336254908|ref|YP_004598015.1| - 0.065 12.8 2.2 0.38 10.4 0.1 2.2 2 0 0 2 2 2 0 Prefoldin subunit DUF812 PF05667.6 gi|336254908|ref|YP_004598015.1| - 0.12 10.8 0.1 0.19 10.1 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF812) Arch_flagellin PF01917.11 gi|336254909|ref|YP_004598016.1| - 3.2e-08 33.4 7.0 4.7e-08 32.8 4.9 1.2 1 0 0 1 1 1 1 Archaebacterial flagellin DUF2259 PF10016.4 gi|336254909|ref|YP_004598016.1| - 0.01 15.5 0.1 0.019 14.7 0.1 1.3 1 0 0 1 1 1 0 Predicted secreted protein (DUF2259) Kelch_1 PF01344.20 gi|336254909|ref|YP_004598016.1| - 0.075 12.5 0.0 0.17 11.4 0.0 1.6 1 0 0 1 1 1 0 Kelch motif CARDB PF07705.6 gi|336254909|ref|YP_004598016.1| - 0.24 11.4 4.7 0.33 11.0 3.0 1.5 1 1 0 1 1 1 0 CARDB Arch_flagellin PF01917.11 gi|336254910|ref|YP_004598017.1| - 7.1e-08 32.2 7.9 1.1e-07 31.6 5.5 1.3 1 0 0 1 1 1 1 Archaebacterial flagellin Herpes_ORF11 PF04797.8 gi|336254910|ref|YP_004598017.1| - 0.066 11.6 0.0 0.086 11.2 0.0 1.3 1 0 0 1 1 1 0 Herpesvirus dUTPase protein DUF2393 PF09624.5 gi|336254910|ref|YP_004598017.1| - 0.069 12.6 0.2 0.089 12.3 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2393) Arch_flagellin PF01917.11 gi|336254911|ref|YP_004598018.1| - 5.1e-36 124.0 4.9 6e-36 123.8 3.4 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin Arch_flagellin PF01917.11 gi|336254912|ref|YP_004598019.1| - 8.3e-35 120.1 10.7 1.1e-34 119.7 7.4 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin DUF296 PF03479.10 gi|336254912|ref|YP_004598019.1| - 0.0014 18.2 0.2 0.0048 16.5 0.1 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF296) DUF1628 PF07790.6 gi|336254912|ref|YP_004598019.1| - 0.33 11.7 6.7 0.18 12.5 2.0 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF1628) Tad PF13400.1 gi|336254912|ref|YP_004598019.1| - 0.42 10.6 5.2 0.81 9.7 3.6 1.5 1 0 0 1 1 1 0 Putative Flp pilus-assembly TadE/G-like DUF2197 PF09963.4 gi|336254913|ref|YP_004598020.1| - 0.00088 19.1 0.2 0.001 18.9 0.2 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2197) DUF3133 PF11331.3 gi|336254913|ref|YP_004598020.1| - 0.0081 15.7 0.2 3.1 7.4 0.0 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF3133) DUF3268 PF11672.3 gi|336254913|ref|YP_004598020.1| - 0.025 14.6 0.1 0.027 14.5 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3268) zf-dskA_traR PF01258.12 gi|336254913|ref|YP_004598020.1| - 0.099 12.3 0.1 4.6 7.0 0.0 2.1 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger zinc_ribbon_5 PF13719.1 gi|336254913|ref|YP_004598020.1| - 0.15 11.6 0.5 0.26 10.9 0.0 1.6 2 0 0 2 2 2 0 zinc-ribbon domain CheF-arch PF04283.7 gi|336254914|ref|YP_004598021.1| - 1.7e-58 197.4 3.4 2.2e-58 197.0 2.4 1.1 1 0 0 1 1 1 1 Chemotaxis signal transduction system protein F from archaea DUF903 PF06004.7 gi|336254914|ref|YP_004598021.1| - 0.0014 18.1 2.1 0.054 13.0 0.0 3.7 5 0 0 5 5 5 1 Bacterial protein of unknown function (DUF903) Vps36_ESCRT-II PF11605.3 gi|336254914|ref|YP_004598021.1| - 0.011 15.5 0.0 0.035 13.8 0.0 1.8 1 0 0 1 1 1 0 Vacuolar protein sorting protein 36 Vps36 bPH_3 PF14470.1 gi|336254914|ref|YP_004598021.1| - 0.038 14.2 0.1 0.085 13.1 0.1 1.7 1 0 0 1 1 1 0 Bacterial PH domain bPH_4 PF06713.6 gi|336254914|ref|YP_004598021.1| - 0.042 13.7 0.1 0.11 12.3 0.1 1.8 1 0 0 1 1 1 0 Bacterial PH domain HEAT_2 PF13646.1 gi|336254915|ref|YP_004598022.1| - 1.6e-57 191.7 26.5 1.3e-16 60.6 1.6 5.1 2 1 3 5 5 5 5 HEAT repeats HEAT_EZ PF13513.1 gi|336254915|ref|YP_004598022.1| - 5.6e-24 83.9 25.6 4.1e-05 23.9 0.2 8.4 6 3 3 9 9 9 6 HEAT-like repeat HEAT PF02985.17 gi|336254915|ref|YP_004598022.1| - 1.2e-23 81.0 12.4 0.0062 16.5 0.0 10.1 9 1 2 11 11 11 6 HEAT repeat HEAT_PBS PF03130.11 gi|336254915|ref|YP_004598022.1| - 4.2e-21 73.2 28.7 0.0019 18.4 0.6 10.3 10 0 0 10 10 10 6 PBS lyase HEAT-like repeat Arm PF00514.18 gi|336254915|ref|YP_004598022.1| - 4.7e-15 54.7 2.2 0.00061 19.5 0.0 7.9 7 2 3 10 10 10 3 Armadillo/beta-catenin-like repeat Adaptin_N PF01602.15 gi|336254915|ref|YP_004598022.1| - 5.4e-09 34.9 0.1 4.6e-05 21.9 0.1 4.1 2 1 2 4 4 4 2 Adaptin N terminal region Cnd1 PF12717.2 gi|336254915|ref|YP_004598022.1| - 0.00022 21.1 1.1 1.4 8.7 0.0 4.3 2 1 2 4 4 4 1 non-SMC mitotic condensation complex subunit 1 Proteasom_PSMB PF10508.4 gi|336254915|ref|YP_004598022.1| - 0.0011 17.2 0.0 0.33 9.1 0.0 2.5 2 0 0 2 2 2 2 Proteasome non-ATPase 26S subunit Cnd3 PF12719.2 gi|336254915|ref|YP_004598022.1| - 0.0049 15.8 0.1 0.088 11.7 0.0 2.5 2 1 0 2 2 2 1 Nuclear condensing complex subunits, C-term domain Imm16 PF15565.1 gi|336254915|ref|YP_004598022.1| - 0.015 15.1 2.7 0.16 11.8 0.0 3.5 2 1 1 3 3 3 0 Immunity protein 16 RasGEF_N_2 PF14663.1 gi|336254915|ref|YP_004598022.1| - 0.056 13.3 1.6 16 5.4 0.0 4.1 4 1 1 5 5 5 0 Rapamycin-insensitive companion of mTOR RasGEF_N domain DUF3458 PF11940.3 gi|336254915|ref|YP_004598022.1| - 0.059 12.1 0.4 0.14 11.0 0.3 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF3458) ALF PF03752.8 gi|336254915|ref|YP_004598022.1| - 0.21 11.4 16.8 0.16 11.8 0.8 5.1 4 1 1 5 5 5 0 Short repeats of unknown function FdhE PF04216.7 gi|336254915|ref|YP_004598022.1| - 0.53 9.9 5.9 3.1 7.4 0.1 2.6 1 1 0 2 2 2 0 Protein involved in formate dehydrogenase formation zinc_ribbon_5 PF13719.1 gi|336254918|ref|YP_004598025.1| - 0.049 13.2 0.0 0.078 12.5 0.0 1.3 1 0 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|336254918|ref|YP_004598025.1| - 0.071 12.8 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 zinc-ribbon domain VHL PF01847.11 gi|336254918|ref|YP_004598025.1| - 0.084 12.4 0.0 0.084 12.4 0.0 1.1 1 0 0 1 1 1 0 von Hippel-Lindau disease tumour suppressor protein PadR PF03551.9 gi|336254919|ref|YP_004598026.1| - 1.8e-08 34.0 0.1 3.6e-08 33.0 0.1 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family DUF937 PF06078.6 gi|336254919|ref|YP_004598026.1| - 0.055 13.7 0.0 0.085 13.0 0.0 1.3 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF937) Ribosomal_S6e PF01092.14 gi|336254921|ref|YP_004598028.1| - 2.9e-39 133.5 0.2 3.3e-39 133.4 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S6e TetR_C_6 PF13977.1 gi|336254923|ref|YP_004598030.1| - 1.2e-12 47.8 3.0 1.2e-12 47.8 2.1 1.9 2 0 0 2 2 2 1 Bacterial transcriptional repressor TetR_N PF00440.18 gi|336254923|ref|YP_004598030.1| - 5.7e-10 38.6 0.1 1.6e-09 37.2 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory proteins, tetR family TetR_C_5 PF08360.6 gi|336254923|ref|YP_004598030.1| - 0.00029 20.7 0.0 0.00048 20.1 0.0 1.3 1 0 0 1 1 1 1 QacR-like protein, C-terminal region Gluconate_2-dh3 PF13618.1 gi|336254923|ref|YP_004598030.1| - 0.13 12.3 2.2 0.41 10.8 1.4 2.1 1 1 0 1 1 1 0 Gluconate 2-dehydrogenase subunit 3 TM2 PF05154.11 gi|336254925|ref|YP_004598032.1| - 0.0015 18.7 1.6 0.0015 18.7 1.1 1.6 2 0 0 2 2 2 1 TM2 domain Cyt_c_ox_IV PF12270.3 gi|336254925|ref|YP_004598032.1| - 0.062 13.0 0.2 0.53 10.0 0.0 2.0 2 0 0 2 2 2 0 Cytochrome c oxidase subunit IV DUF3017 PF11222.3 gi|336254925|ref|YP_004598032.1| - 0.37 10.6 2.2 0.21 11.4 0.2 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3017) SHOCT PF09851.4 gi|336254926|ref|YP_004598033.1| - 2.7e-06 26.6 0.2 4e-06 26.0 0.1 1.3 1 0 0 1 1 1 1 Short C-terminal domain GvpG PF05120.7 gi|336254926|ref|YP_004598033.1| - 0.026 14.3 0.3 0.04 13.7 0.2 1.2 1 0 0 1 1 1 0 Gas vesicle protein G FtsH_ext PF06480.10 gi|336254926|ref|YP_004598033.1| - 0.026 14.6 0.1 0.064 13.4 0.1 1.7 1 1 0 1 1 1 0 FtsH Extracellular DUF3529 PF12046.3 gi|336254926|ref|YP_004598033.1| - 0.03 13.3 0.1 0.069 12.1 0.0 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF3529) DUF1707 PF08044.6 gi|336254926|ref|YP_004598033.1| - 0.1 12.3 0.2 0.1 12.3 0.1 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF1707) DUF1469 PF07332.6 gi|336254926|ref|YP_004598033.1| - 1.8 8.2 9.8 3.1 7.5 6.8 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) IncA PF04156.9 gi|336254926|ref|YP_004598033.1| - 7.6 6.0 13.0 12 5.4 9.0 1.4 1 1 0 1 1 1 0 IncA protein Beta-Casp PF10996.3 gi|336254927|ref|YP_004598034.1| - 2e-16 60.0 0.0 3.7e-16 59.2 0.0 1.4 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B PF00753.22 gi|336254927|ref|YP_004598034.1| - 2.7e-15 56.5 4.0 7e-15 55.1 2.8 1.8 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|336254927|ref|YP_004598034.1| - 7.4e-11 41.9 0.1 5.7e-10 39.0 0.0 2.3 3 0 0 3 3 3 1 Beta-lactamase superfamily domain RMMBL PF07521.7 gi|336254927|ref|YP_004598034.1| - 2.2e-10 40.2 0.0 6.5e-10 38.6 0.0 1.9 2 0 0 2 2 2 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_3 PF13483.1 gi|336254927|ref|YP_004598034.1| - 0.018 14.7 0.1 0.049 13.3 0.1 1.7 1 1 0 1 1 1 0 Beta-lactamase superfamily domain Polysacc_synt_C PF14667.1 gi|336254928|ref|YP_004598035.1| - 0.65 9.7 9.6 9.2 6.0 6.4 2.0 1 1 0 1 1 1 0 Polysaccharide biosynthesis C-terminal domain PepSY_TM_3 PF13706.1 gi|336254928|ref|YP_004598035.1| - 1.4 8.4 7.1 0.28 10.6 1.4 2.4 2 0 0 2 2 2 0 PepSY-associated TM helix Metal_resist PF13801.1 gi|336254929|ref|YP_004598036.1| - 0.19 11.7 0.5 0.19 11.7 0.3 2.6 3 1 0 3 3 3 0 Heavy-metal resistance Tox-MPTase5 PF15641.1 gi|336254929|ref|YP_004598036.1| - 0.81 9.6 3.7 2.2 8.2 0.0 2.4 2 1 1 3 3 3 0 Metallopeptidase toxin 5 DAO PF01266.19 gi|336254930|ref|YP_004598037.1| - 1.8e-56 191.5 1.2 2.1e-56 191.3 0.9 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase Amino_oxidase PF01593.19 gi|336254930|ref|YP_004598037.1| - 0.00045 19.4 0.0 0.00059 19.0 0.0 1.2 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase HI0933_like PF03486.9 gi|336254930|ref|YP_004598037.1| - 0.0032 15.9 0.2 0.011 14.2 0.0 1.8 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_2 PF07992.9 gi|336254930|ref|YP_004598037.1| - 0.012 15.4 0.8 0.28 11.0 0.0 2.6 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|336254930|ref|YP_004598037.1| - 0.081 12.6 0.2 0.081 12.6 0.2 3.0 3 0 0 3 3 3 0 FAD-NAD(P)-binding Pyr_redox_3 PF13738.1 gi|336254930|ref|YP_004598037.1| - 0.088 12.8 2.6 0.46 10.5 0.0 2.7 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase ThiF PF00899.16 gi|336254930|ref|YP_004598037.1| - 0.16 11.8 0.1 0.4 10.5 0.1 1.7 1 0 0 1 1 1 0 ThiF family NAD_binding_10 PF13460.1 gi|336254930|ref|YP_004598037.1| - 0.4 10.6 1.8 0.4 10.6 0.2 1.8 2 0 0 2 2 2 0 NADH(P)-binding NAD_binding_8 PF13450.1 gi|336254930|ref|YP_004598037.1| - 0.97 9.5 5.9 1.1 9.3 0.5 2.6 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain Peptidase_S24 PF00717.18 gi|336254932|ref|YP_004598039.1| - 4.9e-08 32.5 0.0 1.2e-07 31.2 0.0 1.7 1 1 0 1 1 1 1 Peptidase S24-like VirB8 PF04335.8 gi|336254932|ref|YP_004598039.1| - 0.69 9.4 2.8 7.4 6.0 0.0 2.4 1 1 1 2 2 2 0 VirB8 protein DUF1102 PF06510.6 gi|336254933|ref|YP_004598040.1| - 0.0029 17.4 0.0 0.0055 16.5 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1102) DUF1102 PF06510.6 gi|336254935|ref|YP_004598042.1| - 0.00085 19.1 0.5 0.0015 18.3 0.3 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF1102) Cupin_3 PF05899.7 gi|336254935|ref|YP_004598042.1| - 0.18 11.2 2.0 0.66 9.4 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF861) Inhibitor_I78 PF11720.3 gi|336254936|ref|YP_004598043.1| - 0.035 13.8 1.0 0.61 9.8 0.0 2.8 3 0 0 3 3 3 0 Peptidase inhibitor I78 family DUF1034 PF06280.7 gi|336254936|ref|YP_004598043.1| - 0.21 12.0 2.6 0.92 9.9 0.5 2.2 1 1 1 2 2 2 0 Fn3-like domain (DUF1034) chaperone_DMP PF10448.4 gi|336254936|ref|YP_004598043.1| - 0.97 9.3 5.0 1.6 8.5 1.0 2.3 1 1 1 2 2 2 0 20S proteasome chaperone Gp5_C PF06715.7 gi|336254936|ref|YP_004598043.1| - 4.1 7.5 14.5 12 6.0 3.9 3.7 4 0 0 4 4 4 0 Gp5 C-terminal repeat (3 copies) HTH_20 PF12840.2 gi|336254937|ref|YP_004598044.1| - 0.028 14.2 0.1 0.098 12.4 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain Bac_luciferase PF00296.15 gi|336254939|ref|YP_004598046.1| - 2.7e-47 161.4 8.2 3.8e-47 160.9 5.7 1.2 1 0 0 1 1 1 1 Luciferase-like monooxygenase Radical_SAM PF04055.16 gi|336254939|ref|YP_004598046.1| - 0.0033 17.6 0.0 2.3 8.3 0.0 2.3 2 0 0 2 2 2 2 Radical SAM superfamily Peptidase_M42 PF05343.9 gi|336254940|ref|YP_004598047.1| - 7.1e-79 264.5 0.1 8.2e-79 264.4 0.1 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.23 gi|336254940|ref|YP_004598047.1| - 7.1e-08 32.1 0.1 1e-07 31.6 0.1 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M18 PF02127.10 gi|336254940|ref|YP_004598047.1| - 0.015 13.8 0.1 1.2 7.5 0.0 2.1 2 0 0 2 2 2 0 Aminopeptidase I zinc metalloprotease (M18) Aconitase PF00330.15 gi|336254941|ref|YP_004598048.1| - 2e-105 352.9 0.2 1.8e-76 257.5 0.0 2.2 1 1 1 2 2 2 2 Aconitase family (aconitate hydratase) Aconitase_C PF00694.14 gi|336254941|ref|YP_004598048.1| - 1.6e-20 73.5 0.0 3.2e-20 72.5 0.0 1.5 1 0 0 1 1 1 1 Aconitase C-terminal domain dUTPase PF00692.14 gi|336254942|ref|YP_004598049.1| - 1.1e-12 47.4 0.0 1.8e-12 46.8 0.0 1.2 1 0 0 1 1 1 1 dUTPase DUF457 PF04307.9 gi|336254943|ref|YP_004598050.1| - 0.00012 21.4 17.9 0.00045 19.5 12.4 1.8 1 1 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) CopD PF05425.8 gi|336254944|ref|YP_004598051.1| - 5.8e-05 23.2 7.8 5.8e-05 23.2 5.4 1.9 2 0 0 2 2 2 1 Copper resistance protein D DUF4149 PF13664.1 gi|336254944|ref|YP_004598051.1| - 4.6 7.3 7.7 19 5.4 5.3 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF4149) NAD_binding_2 PF03446.10 gi|336254946|ref|YP_004598053.1| - 2.1e-38 131.7 0.0 3e-38 131.2 0.0 1.2 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 6PGD PF00393.14 gi|336254946|ref|YP_004598053.1| - 3.5e-23 82.2 0.0 5.1e-23 81.7 0.0 1.3 1 0 0 1 1 1 1 6-phosphogluconate dehydrogenase, C-terminal domain F420_oxidored PF03807.12 gi|336254946|ref|YP_004598053.1| - 1.3e-06 28.7 0.1 1.9e-06 28.1 0.0 1.3 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_11 PF14833.1 gi|336254946|ref|YP_004598053.1| - 1.6e-05 24.9 0.1 0.0024 17.9 0.0 2.9 2 1 1 3 3 3 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 3HCDH_N PF02737.13 gi|336254946|ref|YP_004598053.1| - 0.00013 21.7 0.1 0.00017 21.2 0.1 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|336254946|ref|YP_004598053.1| - 0.00044 20.2 0.0 0.00094 19.1 0.0 1.5 1 0 0 1 1 1 1 TrkA-N domain 2-Hacid_dh_C PF02826.14 gi|336254946|ref|YP_004598053.1| - 0.00076 18.6 0.0 0.0011 18.1 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|336254946|ref|YP_004598053.1| - 0.024 14.0 0.0 0.055 12.8 0.0 1.6 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DapB_N PF01113.15 gi|336254946|ref|YP_004598053.1| - 0.23 11.3 1.1 0.57 10.1 0.7 1.7 1 1 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Cdc6_C PF09079.6 gi|336254947|ref|YP_004598054.1| - 4e-24 84.1 0.8 1.6e-23 82.2 0.0 2.5 3 0 0 3 3 3 1 CDC6, C terminal AAA_16 PF13191.1 gi|336254947|ref|YP_004598054.1| - 2.2e-11 44.0 0.0 6e-10 39.4 0.0 2.9 2 2 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|336254947|ref|YP_004598054.1| - 1e-10 41.8 0.0 3.2e-10 40.2 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|336254947|ref|YP_004598054.1| - 9.1e-07 29.1 0.0 2.4e-06 27.8 0.0 1.8 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|336254947|ref|YP_004598054.1| - 0.0001 22.0 0.0 0.0002 21.1 0.0 1.4 1 0 0 1 1 1 1 Archaeal ATPase KAP_NTPase PF07693.9 gi|336254947|ref|YP_004598054.1| - 0.00094 18.2 0.0 0.66 8.9 0.0 2.3 1 1 0 2 2 2 2 KAP family P-loop domain NACHT PF05729.7 gi|336254947|ref|YP_004598054.1| - 0.0016 18.0 0.0 0.0036 16.9 0.0 1.6 1 0 0 1 1 1 1 NACHT domain AAA_5 PF07728.9 gi|336254947|ref|YP_004598054.1| - 0.005 16.5 0.0 0.036 13.7 0.0 2.3 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_25 PF13481.1 gi|336254947|ref|YP_004598054.1| - 0.007 15.7 0.0 0.14 11.5 0.0 2.4 2 0 0 2 2 2 1 AAA domain DUF815 PF05673.8 gi|336254947|ref|YP_004598054.1| - 0.0084 15.0 0.0 0.014 14.2 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) NB-ARC PF00931.17 gi|336254947|ref|YP_004598054.1| - 0.02 13.7 0.0 0.036 12.9 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain AAA_18 PF13238.1 gi|336254947|ref|YP_004598054.1| - 0.034 14.4 1.0 0.19 12.0 0.0 2.6 3 1 0 4 4 3 0 AAA domain RNA_helicase PF00910.17 gi|336254947|ref|YP_004598054.1| - 0.039 14.1 0.0 0.078 13.1 0.0 1.5 1 0 0 1 1 1 0 RNA helicase ORC4_C PF14629.1 gi|336254947|ref|YP_004598054.1| - 0.04 13.3 0.0 0.077 12.3 0.0 1.4 1 0 0 1 1 1 0 Origin recognition complex (ORC) subunit 4 C-terminus DEAD PF00270.24 gi|336254947|ref|YP_004598054.1| - 0.055 12.9 0.0 3.6 7.0 0.0 2.3 1 1 0 2 2 2 0 DEAD/DEAH box helicase AAA_2 PF07724.9 gi|336254947|ref|YP_004598054.1| - 0.065 13.1 0.0 0.17 11.8 0.0 1.7 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) T2SE PF00437.15 gi|336254947|ref|YP_004598054.1| - 0.069 12.0 0.0 0.14 11.0 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_32 PF13654.1 gi|336254947|ref|YP_004598054.1| - 0.091 11.4 0.3 4.9 5.6 0.0 2.2 2 0 0 2 2 2 0 AAA domain TrwB_AAD_bind PF10412.4 gi|336254947|ref|YP_004598054.1| - 0.093 11.3 0.0 0.48 8.9 0.0 1.9 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain AAA_17 PF13207.1 gi|336254947|ref|YP_004598054.1| - 0.33 11.7 3.0 0.43 11.4 0.3 2.8 2 1 0 2 2 2 0 AAA domain HNH_2 PF13391.1 gi|336254948|ref|YP_004598055.1| - 6.3e-11 41.8 0.1 1.2e-10 41.0 0.1 1.5 1 0 0 1 1 1 1 HNH endonuclease HemN_C PF06969.11 gi|336254948|ref|YP_004598055.1| - 0.00025 21.0 0.2 0.0045 17.0 0.1 2.6 2 0 0 2 2 2 1 HemN C-terminal domain AAA_assoc_C PF09821.4 gi|336254948|ref|YP_004598055.1| - 0.0017 18.5 0.0 0.3 11.3 0.0 2.5 2 0 0 2 2 2 1 C-terminal AAA-associated domain HNH PF01844.18 gi|336254948|ref|YP_004598055.1| - 0.0034 17.2 0.2 0.0066 16.3 0.1 1.5 1 0 0 1 1 1 1 HNH endonuclease Mrr_N PF14338.1 gi|336254948|ref|YP_004598055.1| - 0.053 13.6 0.1 9.7 6.3 0.0 2.8 2 0 0 2 2 2 0 Mrr N-terminal domain HTH_45 PF14947.1 gi|336254948|ref|YP_004598055.1| - 0.065 13.0 0.0 1.9 8.3 0.0 2.3 2 0 0 2 2 2 0 Winged helix-turn-helix Methyltransf_2 PF00891.13 gi|336254949|ref|YP_004598056.1| - 0.059 12.5 0.0 0.095 11.8 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase Cuticle_1 PF08140.6 gi|336254950|ref|YP_004598057.1| - 0.094 12.5 0.0 6.4 6.6 0.0 2.3 2 0 0 2 2 2 0 Crustacean cuticle protein repeat DUF4225 PF13988.1 gi|336254951|ref|YP_004598058.1| - 0.2 11.1 2.8 0.24 10.8 2.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4225) DUF4131 PF13567.1 gi|336254951|ref|YP_004598058.1| - 3.4 7.0 5.8 3.6 6.9 4.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF393 PF04134.7 gi|336254952|ref|YP_004598059.1| - 3.6e-08 34.5 0.1 4.3e-08 34.2 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function, DUF393 LMF1 PF06762.9 gi|336254954|ref|YP_004598061.1| - 9.1e-120 399.9 0.0 1.4e-119 399.3 0.0 1.2 1 0 0 1 1 1 1 Lipase maturation factor DUF4320 PF14208.1 gi|336254954|ref|YP_004598061.1| - 0.072 13.0 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4320) HpcH_HpaI PF03328.9 gi|336254955|ref|YP_004598062.1| - 2.8e-31 108.1 0.0 3.5e-31 107.7 0.0 1.0 1 0 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family DUF3665 PF12427.3 gi|336254955|ref|YP_004598062.1| - 0.29 10.5 1.5 0.32 10.3 0.1 1.8 2 0 0 2 2 2 0 Branched-chain amino acid aminotransferase Sulfatase PF00884.18 gi|336254958|ref|YP_004598065.1| - 2.4e-44 151.7 0.0 3e-44 151.4 0.0 1.1 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|336254958|ref|YP_004598065.1| - 6.3e-18 65.2 0.7 2.3e-16 60.1 0.5 2.3 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase DUF1501 PF07394.7 gi|336254958|ref|YP_004598065.1| - 0.0013 17.6 0.0 0.0036 16.2 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF1501) Phosphoesterase PF04185.9 gi|336254958|ref|YP_004598065.1| - 0.013 14.7 0.3 0.054 12.6 0.0 1.8 2 0 0 2 2 2 0 Phosphoesterase family DUF229 PF02995.12 gi|336254958|ref|YP_004598065.1| - 0.25 9.6 0.0 0.31 9.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF229) Sulfatase PF00884.18 gi|336254959|ref|YP_004598066.1| - 3.7e-47 161.0 0.0 4.8e-47 160.6 0.0 1.1 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|336254959|ref|YP_004598066.1| - 1.3e-09 37.9 0.0 0.00052 19.4 0.0 2.3 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF1501 PF07394.7 gi|336254959|ref|YP_004598066.1| - 0.0012 17.8 0.3 0.0025 16.7 0.2 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1501) Sulfatase_C PF14707.1 gi|336254959|ref|YP_004598066.1| - 0.014 15.6 0.0 0.028 14.7 0.0 1.4 1 0 0 1 1 1 0 C-terminal region of aryl-sulfatase DUF229 PF02995.12 gi|336254959|ref|YP_004598066.1| - 0.19 10.0 0.0 0.27 9.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF229) PDGF_N PF04692.8 gi|336254960|ref|YP_004598067.1| - 0.085 13.3 0.0 0.16 12.4 0.0 1.4 1 0 0 1 1 1 0 Platelet-derived growth factor, N terminal region IU_nuc_hydro PF01156.14 gi|336254961|ref|YP_004598068.1| - 3.5e-84 282.6 0.7 3.9e-84 282.5 0.5 1.0 1 0 0 1 1 1 1 Inosine-uridine preferring nucleoside hydrolase CMD PF02627.15 gi|336254962|ref|YP_004598069.1| - 4.4e-13 48.8 0.2 6.4e-13 48.3 0.1 1.3 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family DUF2562 PF10814.3 gi|336254962|ref|YP_004598069.1| - 0.027 14.4 0.1 0.036 14.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2562) PseudoU_synth_1 PF01416.15 gi|336254963|ref|YP_004598070.1| - 2e-21 76.3 0.0 1e-10 41.9 0.0 2.2 2 0 0 2 2 2 2 tRNA pseudouridine synthase DUF4212 PF13937.1 gi|336254964|ref|YP_004598071.1| - 0.64 10.0 2.4 1.5 8.9 1.7 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4212) DUF4307 PF14155.1 gi|336254964|ref|YP_004598071.1| - 2.3 8.0 5.6 0.71 9.6 0.8 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4307) HAMP PF00672.20 gi|336254964|ref|YP_004598071.1| - 6.9 6.9 10.4 9.1 6.5 0.6 2.2 2 0 0 2 2 2 0 HAMP domain DUF4397 PF14344.1 gi|336254965|ref|YP_004598072.1| - 2.8e-39 134.1 10.9 3.5e-23 82.2 1.2 3.5 3 0 0 3 3 3 3 Domain of unknown function (DUF4397) TAT_signal PF10518.4 gi|336254965|ref|YP_004598072.1| - 0.1 12.6 0.4 0.19 11.8 0.3 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence PadR PF03551.9 gi|336254966|ref|YP_004598073.1| - 7.2e-13 48.1 0.2 8.6e-13 47.8 0.2 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|336254966|ref|YP_004598073.1| - 4.8e-06 26.8 0.0 6.4e-06 26.4 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|336254966|ref|YP_004598073.1| - 4.7e-05 23.1 0.0 0.00044 20.0 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix HTH_34 PF13601.1 gi|336254966|ref|YP_004598073.1| - 0.0012 18.8 0.0 0.0016 18.4 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF1495 PF07381.6 gi|336254966|ref|YP_004598073.1| - 0.0086 15.7 0.0 0.012 15.2 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) Penicillinase_R PF03965.11 gi|336254966|ref|YP_004598073.1| - 0.034 14.2 0.0 0.034 14.2 0.0 1.2 1 0 0 1 1 1 0 Penicillinase repressor HxlR PF01638.12 gi|336254966|ref|YP_004598073.1| - 0.035 13.7 0.0 0.042 13.4 0.0 1.2 1 0 0 1 1 1 0 HxlR-like helix-turn-helix DUF4364 PF14277.1 gi|336254966|ref|YP_004598073.1| - 0.047 13.3 0.0 0.079 12.5 0.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4364) DUF505 PF04458.7 gi|336254966|ref|YP_004598073.1| - 0.054 11.6 0.0 0.056 11.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) Mrr_N PF14338.1 gi|336254966|ref|YP_004598073.1| - 0.11 12.5 0.0 0.19 11.8 0.0 1.4 1 0 0 1 1 1 0 Mrr N-terminal domain NUDIX PF00293.23 gi|336254967|ref|YP_004598074.1| - 1.5e-15 57.0 0.4 2e-15 56.6 0.3 1.1 1 0 0 1 1 1 1 NUDIX domain Pentapeptide_4 PF13599.1 gi|336254968|ref|YP_004598075.1| - 0.0054 16.5 0.1 0.025 14.3 0.1 2.1 1 1 0 1 1 1 1 Pentapeptide repeats (9 copies) DUF1192 PF06698.6 gi|336254968|ref|YP_004598075.1| - 4 7.3 9.3 3.1 7.6 0.6 3.6 3 1 0 3 3 3 0 Protein of unknown function (DUF1192) TGT PF01702.13 gi|336254970|ref|YP_004598077.1| - 2.8e-46 157.7 0.0 4.9e-46 156.9 0.0 1.4 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase TGT_C1 PF14809.1 gi|336254970|ref|YP_004598077.1| - 0.00057 19.6 0.1 0.025 14.3 0.0 2.4 2 0 0 2 2 2 1 C1 domain of tRNA-guanine transglycosylase dimerisation HTH_24 PF13412.1 gi|336254972|ref|YP_004598079.1| - 6e-14 51.1 0.0 1.5e-13 49.8 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|336254972|ref|YP_004598079.1| - 2.7e-13 49.1 2.9 3.8e-13 48.7 1.3 1.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_20 PF12840.2 gi|336254972|ref|YP_004598079.1| - 3.3e-07 30.0 0.1 1.3e-06 28.0 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|336254972|ref|YP_004598079.1| - 8.9e-07 28.4 0.0 1.6e-06 27.6 0.0 1.4 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.2 gi|336254972|ref|YP_004598079.1| - 2.3e-06 27.1 0.1 3.2e-05 23.4 0.0 2.1 2 0 0 2 2 2 1 MarR family HTH_CodY PF08222.6 gi|336254972|ref|YP_004598079.1| - 3.9e-05 22.8 0.3 0.00011 21.5 0.2 1.7 1 0 0 1 1 1 1 CodY helix-turn-helix domain HTH_27 PF13463.1 gi|336254972|ref|YP_004598079.1| - 0.00019 21.6 0.2 0.00064 19.9 0.0 1.8 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_28 PF13518.1 gi|336254972|ref|YP_004598079.1| - 0.00053 19.9 0.0 0.0012 18.8 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|336254972|ref|YP_004598079.1| - 0.00064 19.2 0.2 0.0012 18.4 0.1 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_10 PF04967.7 gi|336254972|ref|YP_004598079.1| - 0.0018 17.8 0.1 0.0034 16.9 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_30 PF13556.1 gi|336254972|ref|YP_004598079.1| - 0.0028 17.1 0.3 0.0078 15.7 0.2 1.7 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain HTH_Tnp_ISL3 PF13542.1 gi|336254972|ref|YP_004598079.1| - 0.004 16.3 0.2 0.0069 15.5 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_DeoR PF08220.7 gi|336254972|ref|YP_004598079.1| - 0.0067 15.9 0.1 0.015 14.7 0.0 1.6 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain TrmB PF01978.14 gi|336254972|ref|YP_004598079.1| - 0.0074 15.9 0.0 0.021 14.5 0.0 1.7 2 0 0 2 2 1 1 Sugar-specific transcriptional regulator TrmB HTH_38 PF13936.1 gi|336254972|ref|YP_004598079.1| - 0.0077 15.7 0.0 0.015 14.8 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|336254972|ref|YP_004598079.1| - 0.0097 15.3 0.1 0.025 14.0 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 MarR PF01047.17 gi|336254972|ref|YP_004598079.1| - 0.0099 15.5 0.0 0.034 13.8 0.0 1.8 2 0 0 2 2 2 1 MarR family Rrf2 PF02082.15 gi|336254972|ref|YP_004598079.1| - 0.015 15.4 0.0 0.051 13.6 0.0 1.8 2 0 0 2 2 2 0 Transcriptional regulator HTH_Crp_2 PF13545.1 gi|336254972|ref|YP_004598079.1| - 0.017 14.8 0.1 0.045 13.5 0.0 1.7 2 0 0 2 2 1 0 Crp-like helix-turn-helix domain Fe_dep_repress PF01325.14 gi|336254972|ref|YP_004598079.1| - 0.018 15.0 0.0 0.052 13.4 0.0 1.7 2 0 0 2 2 1 0 Iron dependent repressor, N-terminal DNA binding domain GntR PF00392.16 gi|336254972|ref|YP_004598079.1| - 0.027 13.8 1.9 0.047 13.1 0.1 2.2 3 0 0 3 3 3 0 Bacterial regulatory proteins, gntR family HTH_36 PF13730.1 gi|336254972|ref|YP_004598079.1| - 0.029 14.4 0.0 0.042 13.9 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain DUF533 PF04391.7 gi|336254972|ref|YP_004598079.1| - 0.03 13.6 0.0 0.05 12.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF533) DDRGK PF09756.4 gi|336254972|ref|YP_004598079.1| - 0.06 12.7 0.0 0.099 12.0 0.0 1.3 1 0 0 1 1 1 0 DDRGK domain PaaX PF07848.7 gi|336254972|ref|YP_004598079.1| - 0.061 13.3 0.2 0.83 9.7 0.1 2.2 2 0 0 2 2 2 0 PaaX-like protein HTH_5 PF01022.15 gi|336254972|ref|YP_004598079.1| - 0.079 12.6 0.0 0.13 11.9 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family LexA_DNA_bind PF01726.11 gi|336254972|ref|YP_004598079.1| - 0.081 12.4 0.0 0.16 11.5 0.0 1.5 1 0 0 1 1 1 0 LexA DNA binding domain HTH_IclR PF09339.5 gi|336254972|ref|YP_004598079.1| - 0.12 11.9 0.1 0.29 10.7 0.1 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain HemY_N PF07219.8 gi|336254973|ref|YP_004598080.1| - 0.064 12.8 0.3 0.095 12.2 0.2 1.3 1 0 0 1 1 1 0 HemY protein N-terminus TGT_C2 PF14810.1 gi|336254974|ref|YP_004598081.1| - 7.5e-19 67.3 0.0 2e-18 66.0 0.0 1.7 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase TGT PF01702.13 gi|336254974|ref|YP_004598081.1| - 6.9e-17 61.5 0.0 1.3e-16 60.5 0.0 1.4 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase PUA PF01472.15 gi|336254974|ref|YP_004598081.1| - 7e-13 48.1 0.5 2e-12 46.6 0.4 1.7 1 0 0 1 1 1 1 PUA domain DUF1828 PF08861.5 gi|336254974|ref|YP_004598081.1| - 0.055 13.1 0.0 0.12 11.9 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function DUF1828 Fe_dep_repress PF01325.14 gi|336254976|ref|YP_004598083.1| - 4.6e-13 48.9 0.1 1.3e-12 47.4 0.0 1.8 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.2 gi|336254976|ref|YP_004598083.1| - 4.1e-07 29.5 0.0 8.7e-07 28.5 0.0 1.5 1 0 0 1 1 1 1 MarR family Fe_dep_repr_C PF02742.10 gi|336254976|ref|YP_004598083.1| - 0.00013 21.5 0.1 0.00022 20.8 0.1 1.3 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain HTH_27 PF13463.1 gi|336254976|ref|YP_004598083.1| - 0.00045 20.4 0.1 0.0017 18.6 0.0 1.8 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|336254976|ref|YP_004598083.1| - 0.0021 17.5 0.1 0.005 16.3 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.17 gi|336254976|ref|YP_004598083.1| - 0.003 17.2 0.0 0.0058 16.3 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_12 PF08461.5 gi|336254976|ref|YP_004598083.1| - 0.018 14.7 0.5 0.27 10.9 0.1 2.5 2 1 0 2 2 2 0 Ribonuclease R winged-helix domain HTH_24 PF13412.1 gi|336254976|ref|YP_004598083.1| - 0.019 14.3 0.0 0.046 13.1 0.0 1.7 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Ribosomal_S19e PF01090.14 gi|336254976|ref|YP_004598083.1| - 0.02 14.3 0.0 0.028 13.8 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein S19e TrmB PF01978.14 gi|336254976|ref|YP_004598083.1| - 0.024 14.3 0.1 0.11 12.2 0.0 2.2 2 2 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB LexA_DNA_bind PF01726.11 gi|336254976|ref|YP_004598083.1| - 0.048 13.2 0.0 0.083 12.4 0.0 1.4 1 0 0 1 1 1 0 LexA DNA binding domain HTH_20 PF12840.2 gi|336254976|ref|YP_004598083.1| - 0.093 12.5 0.0 0.19 11.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Ferritin PF00210.19 gi|336254977|ref|YP_004598084.1| - 2.2e-28 98.7 8.1 2.6e-28 98.5 5.6 1.1 1 0 0 1 1 1 1 Ferritin-like domain DUF2383 PF09537.5 gi|336254977|ref|YP_004598084.1| - 0.058 13.6 1.1 1.9 8.7 0.0 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF2383) HMA PF00403.21 gi|336254977|ref|YP_004598084.1| - 0.12 12.4 0.1 0.58 10.3 0.0 2.1 2 0 0 2 2 2 0 Heavy-metal-associated domain DUF1664 PF07889.7 gi|336254977|ref|YP_004598084.1| - 0.13 12.0 0.6 0.88 9.3 0.0 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) DUF892 PF05974.7 gi|336254977|ref|YP_004598084.1| - 0.22 11.2 5.4 0.4 10.4 3.6 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF892) CorA PF01544.13 gi|336254977|ref|YP_004598084.1| - 0.23 10.4 2.3 0.25 10.3 1.1 1.4 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein DUF1451 PF07295.6 gi|336254977|ref|YP_004598084.1| - 0.54 10.0 8.1 0.29 10.8 1.0 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF1451) Osmo_CC PF08946.5 gi|336254977|ref|YP_004598084.1| - 2.3 8.3 0.0 2.3 8.3 0.0 3.7 3 1 0 3 3 3 0 Osmosensory transporter coiled coil HHH_5 PF14520.1 gi|336254977|ref|YP_004598084.1| - 2.7 8.2 4.8 26 5.1 0.1 2.9 2 1 0 2 2 2 0 Helix-hairpin-helix domain DUF308 PF03729.8 gi|336254978|ref|YP_004598085.1| - 6.9e-18 64.4 36.2 1.8e-09 37.4 8.5 3.1 1 1 2 3 3 3 3 Short repeat of unknown function (DUF308) DUF4538 PF15061.1 gi|336254978|ref|YP_004598085.1| - 0.27 10.5 8.5 1.7 7.9 0.1 3.5 3 0 0 3 3 3 0 Domain of unknown function (DUF4538) Bac_luciferase PF00296.15 gi|336254979|ref|YP_004598086.1| - 7.9e-40 136.8 3.9 1e-39 136.4 2.7 1.2 1 0 0 1 1 1 1 Luciferase-like monooxygenase HTH_10 PF04967.7 gi|336254980|ref|YP_004598087.1| - 2.2e-20 71.9 0.0 5.2e-20 70.7 0.0 1.7 1 0 0 1 1 1 1 HTH DNA binding domain GAF_2 PF13185.1 gi|336254980|ref|YP_004598087.1| - 3.4e-18 66.5 0.2 1.1e-17 64.9 0.1 1.9 1 0 0 1 1 1 1 GAF domain Response_reg PF00072.19 gi|336254980|ref|YP_004598087.1| - 1.6e-17 63.4 0.2 3.9e-16 59.0 0.1 2.9 2 1 0 2 2 2 1 Response regulator receiver domain GAF PF01590.21 gi|336254980|ref|YP_004598087.1| - 8.5e-12 45.4 0.1 2.7e-11 43.8 0.0 1.9 2 0 0 2 2 2 1 GAF domain GAF_3 PF13492.1 gi|336254980|ref|YP_004598087.1| - 2.6e-07 30.7 0.0 8.2e-07 29.1 0.0 1.8 1 0 0 1 1 1 1 GAF domain Sigma70_r4_2 PF08281.7 gi|336254980|ref|YP_004598087.1| - 0.00083 18.7 0.1 0.02 14.3 0.0 3.0 2 1 0 2 2 2 1 Sigma-70, region 4 GerE PF00196.14 gi|336254980|ref|YP_004598087.1| - 0.046 13.0 0.0 0.1 11.9 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_24 PF13412.1 gi|336254980|ref|YP_004598087.1| - 0.068 12.5 0.0 0.14 11.5 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Response_reg PF00072.19 gi|336254981|ref|YP_004598088.1| - 3.1e-23 81.8 0.0 3.7e-23 81.6 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain PAS_9 PF13426.1 gi|336254982|ref|YP_004598089.1| - 4.8e-74 245.3 0.5 1.7e-16 60.4 0.0 6.8 6 0 0 6 6 6 6 PAS domain PAS_4 PF08448.5 gi|336254982|ref|YP_004598089.1| - 1.2e-72 240.9 30.2 2.1e-13 50.2 0.6 7.6 8 0 0 8 8 8 6 PAS fold PAS PF00989.19 gi|336254982|ref|YP_004598089.1| - 1.7e-58 195.2 0.6 5e-13 48.8 0.0 7.0 7 0 0 7 7 7 5 PAS fold PAS_8 PF13188.1 gi|336254982|ref|YP_004598089.1| - 7.4e-35 117.6 4.6 1.9e-08 33.8 0.0 7.0 6 0 0 6 6 6 5 PAS domain HATPase_c PF02518.21 gi|336254982|ref|YP_004598089.1| - 3.7e-27 94.2 0.2 1.4e-26 92.4 0.0 2.1 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_3 PF13492.1 gi|336254982|ref|YP_004598089.1| - 1e-21 77.3 6.4 6.3e-09 36.0 0.1 5.0 5 0 0 5 5 5 2 GAF domain PAS_7 PF12860.2 gi|336254982|ref|YP_004598089.1| - 5.9e-21 74.6 8.7 5.6e-07 29.5 0.0 9.0 7 2 0 7 7 7 3 PAS fold PAS_3 PF08447.6 gi|336254982|ref|YP_004598089.1| - 1.5e-16 60.2 0.6 0.00051 20.0 0.0 6.4 6 1 0 6 6 6 4 PAS fold HisKA PF00512.20 gi|336254982|ref|YP_004598089.1| - 1.8e-10 40.6 0.2 1.8e-10 40.6 0.1 4.1 4 0 0 4 4 4 1 His Kinase A (phospho-acceptor) domain PAS_10 PF13596.1 gi|336254982|ref|YP_004598089.1| - 2.2e-10 40.7 0.0 0.53 10.5 0.0 6.8 6 1 0 7 7 6 2 PAS domain GAF_2 PF13185.1 gi|336254982|ref|YP_004598089.1| - 2.8e-10 40.8 11.2 1e-06 29.3 0.5 5.3 5 1 1 6 6 5 2 GAF domain HATPase_c_5 PF14501.1 gi|336254982|ref|YP_004598089.1| - 5.5e-05 22.7 0.0 0.00012 21.7 0.0 1.6 1 0 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.1 gi|336254982|ref|YP_004598089.1| - 0.0058 16.2 0.0 0.013 15.1 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Peripla_BP_6 PF13458.1 gi|336254983|ref|YP_004598090.1| - 2e-26 93.1 9.8 2.6e-26 92.7 6.8 1.1 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.23 gi|336254983|ref|YP_004598090.1| - 1.8e-16 59.8 0.0 2.7e-16 59.3 0.0 1.2 1 0 0 1 1 1 1 Receptor family ligand binding region MCPsignal PF00015.16 gi|336254984|ref|YP_004598091.1| - 8.7e-45 152.8 77.6 4.1e-44 150.6 24.5 4.2 1 1 3 4 4 4 3 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.20 gi|336254984|ref|YP_004598091.1| - 2e-15 56.7 10.0 3.3e-15 56.0 1.4 5.9 7 0 0 7 7 7 2 HAMP domain Laminin_II PF06009.7 gi|336254984|ref|YP_004598091.1| - 0.031 14.0 46.6 0.32 10.7 5.3 5.6 2 2 3 5 5 5 0 Laminin Domain II GAS PF13851.1 gi|336254984|ref|YP_004598091.1| - 0.044 12.9 31.8 0.089 11.9 4.9 3.9 3 2 0 3 3 3 0 Growth-arrest specific micro-tubule binding DUF948 PF06103.6 gi|336254984|ref|YP_004598091.1| - 0.24 11.2 37.4 0.11 12.4 0.7 6.2 4 2 3 7 7 7 0 Bacterial protein of unknown function (DUF948) DUF3584 PF12128.3 gi|336254984|ref|YP_004598091.1| - 0.52 7.5 55.0 0.26 8.5 19.8 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3584) Atg14 PF10186.4 gi|336254984|ref|YP_004598091.1| - 1.5 7.7 27.4 0.059 12.2 1.0 3.6 2 1 1 3 3 3 0 UV radiation resistance protein and autophagy-related subunit 14 Baculo_PEP_C PF04513.7 gi|336254984|ref|YP_004598091.1| - 2.9 7.6 28.3 0.07 12.9 3.4 4.9 3 2 1 5 5 5 0 Baculovirus polyhedron envelope protein, PEP, C terminus Spc7 PF08317.6 gi|336254984|ref|YP_004598091.1| - 3.2 6.3 36.8 0.87 8.1 2.7 3.8 2 1 2 4 4 4 0 Spc7 kinetochore protein IncA PF04156.9 gi|336254984|ref|YP_004598091.1| - 3.7 7.0 49.2 0.22 11.0 2.6 5.4 2 1 2 4 4 3 0 IncA protein Syntaxin PF00804.20 gi|336254984|ref|YP_004598091.1| - 4.3 7.5 32.3 0.29 11.3 2.8 5.0 1 1 4 5 5 5 0 Syntaxin NPV_P10 PF05531.7 gi|336254984|ref|YP_004598091.1| - 6.1 7.1 25.4 11 6.3 2.8 5.8 3 2 2 5 5 5 0 Nucleopolyhedrovirus P10 protein GPW_gp25 PF04965.9 gi|336254985|ref|YP_004598092.1| - 0.003 17.0 0.5 1.3 8.5 0.0 2.4 1 1 1 2 2 2 2 Gene 25-like lysozyme PilJ PF13675.1 gi|336254985|ref|YP_004598092.1| - 0.037 14.3 5.2 0.67 10.3 0.3 2.0 1 1 1 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term DUF4404 PF14357.1 gi|336254985|ref|YP_004598092.1| - 0.3 11.5 3.5 0.13 12.6 0.6 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4404) Packaging_FI PF14000.1 gi|336254985|ref|YP_004598092.1| - 1.1 9.4 5.1 0.36 11.0 1.1 1.8 2 0 0 2 2 2 0 DNA packaging protein FI Pyridox_oxidase PF01243.15 gi|336254986|ref|YP_004598093.1| - 4e-18 65.2 0.0 5.2e-18 64.8 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_ox_2 PF12900.2 gi|336254986|ref|YP_004598093.1| - 2e-06 27.6 0.0 2.9e-06 27.1 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase DUF385 PF04075.9 gi|336254986|ref|YP_004598093.1| - 0.052 13.5 0.0 0.06 13.3 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF385) Pyrid_oxidase_2 PF13883.1 gi|336254986|ref|YP_004598093.1| - 0.096 12.4 0.0 0.16 11.6 0.0 1.4 1 1 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase Aldolase PF01081.14 gi|336254987|ref|YP_004598094.1| - 1.3e-44 151.7 2.1 1.5e-44 151.5 1.5 1.0 1 0 0 1 1 1 1 KDPG and KHG aldolase TIM-br_sig_trns PF09370.5 gi|336254987|ref|YP_004598094.1| - 0.0079 15.2 0.2 0.021 13.8 0.1 1.6 1 1 0 1 1 1 1 TIM-barrel signal transduction protein HATPase_c_2 PF13581.1 gi|336254987|ref|YP_004598094.1| - 0.23 11.2 2.1 0.15 11.8 0.3 1.6 2 0 0 2 2 2 0 Histidine kinase-like ATPase domain Ribul_P_3_epim PF00834.14 gi|336254987|ref|YP_004598094.1| - 0.84 8.7 4.7 1.9 7.5 0.1 3.0 2 1 0 2 2 2 0 Ribulose-phosphate 3 epimerase family DHO_dh PF01180.16 gi|336254987|ref|YP_004598094.1| - 3.6 6.4 5.2 8.2 5.2 0.0 2.8 2 1 1 3 3 3 0 Dihydroorotate dehydrogenase PfkB PF00294.19 gi|336254988|ref|YP_004598095.1| - 2e-48 165.1 0.4 2.2e-48 164.9 0.3 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase MR_MLE_C PF13378.1 gi|336254989|ref|YP_004598096.1| - 1.4e-35 121.5 0.0 2.7e-35 120.7 0.0 1.5 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.11 gi|336254989|ref|YP_004598096.1| - 8.5e-26 90.2 0.0 1.6e-25 89.4 0.0 1.4 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MR_MLE PF01188.16 gi|336254989|ref|YP_004598096.1| - 3.2e-15 56.4 0.0 8.2e-15 55.0 0.0 1.8 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Glyco_hydro_4 PF02056.11 gi|336254990|ref|YP_004598097.1| - 2.1e-62 209.6 0.0 3.4e-62 209.0 0.0 1.3 1 0 0 1 1 1 1 Family 4 glycosyl hydrolase Glyco_hydro_4C PF11975.3 gi|336254990|ref|YP_004598097.1| - 3e-42 144.9 0.0 6.4e-42 143.9 0.0 1.6 1 1 0 1 1 1 1 Family 4 glycosyl hydrolase C-terminal domain Ldh_1_N PF00056.18 gi|336254990|ref|YP_004598097.1| - 0.03 14.1 0.2 5.7 6.7 0.0 2.7 3 0 0 3 3 3 0 lactate/malate dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|336254990|ref|YP_004598097.1| - 0.14 12.5 0.0 0.35 11.3 0.0 1.7 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent FtsX PF02687.16 gi|336254991|ref|YP_004598098.1| - 0.44 10.3 4.9 0.9 9.3 3.4 1.5 1 0 0 1 1 1 0 FtsX-like permease family DUF4282 PF14110.1 gi|336254991|ref|YP_004598098.1| - 1.4 9.1 4.6 3.3 7.9 3.2 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4282) Methyltrn_RNA_2 PF04013.7 gi|336254992|ref|YP_004598099.1| - 2.2e-54 184.0 0.0 2.5e-54 183.8 0.0 1.0 1 0 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase DUF457 PF04307.9 gi|336254993|ref|YP_004598100.1| - 2.9e-14 52.7 4.5 3.4e-14 52.4 3.1 1.1 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) Zn_dep_PLPC PF00882.13 gi|336254993|ref|YP_004598100.1| - 0.056 13.1 0.4 0.081 12.5 0.3 1.3 1 0 0 1 1 1 0 Zinc dependent phospholipase C zf-ribbon_3 PF13248.1 gi|336254994|ref|YP_004598101.1| - 6.5e-05 22.0 3.0 0.00012 21.1 2.1 1.5 1 1 0 1 1 1 1 zinc-ribbon domain Prok-RING_1 PF14446.1 gi|336254994|ref|YP_004598101.1| - 9.8e-05 22.0 2.8 0.0002 21.0 1.9 1.4 1 1 0 1 1 1 1 Prokaryotic RING finger family 1 zinc_ribbon_2 PF13240.1 gi|336254994|ref|YP_004598101.1| - 0.0002 20.7 1.0 0.22 11.0 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|336254994|ref|YP_004598101.1| - 0.00041 20.0 0.3 0.00063 19.5 0.2 1.3 1 0 0 1 1 1 1 Double zinc ribbon Zn-ribbon_8 PF09723.5 gi|336254994|ref|YP_004598101.1| - 0.0035 17.2 3.5 0.1 12.5 2.4 2.1 1 1 0 1 1 1 1 Zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|336254994|ref|YP_004598101.1| - 0.0035 16.6 2.2 0.005 16.1 1.5 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding zf-IS66 PF13005.2 gi|336254994|ref|YP_004598101.1| - 0.0048 16.8 1.2 0.16 11.9 0.1 2.1 2 0 0 2 2 2 1 zinc-finger binding domain of transposase IS66 Nudix_N_2 PF14803.1 gi|336254994|ref|YP_004598101.1| - 0.0064 16.1 2.4 0.045 13.4 1.7 2.0 1 1 1 2 2 2 1 Nudix N-terminal UPF0547 PF10571.4 gi|336254994|ref|YP_004598101.1| - 0.0065 16.1 1.6 0.015 14.9 1.1 1.7 1 1 0 1 1 1 1 Uncharacterised protein family UPF0547 PhnA_Zn_Ribbon PF08274.7 gi|336254994|ref|YP_004598101.1| - 0.008 15.9 2.0 0.055 13.2 1.4 2.0 1 1 0 1 1 1 1 PhnA Zinc-Ribbon A2L_zn_ribbon PF08792.5 gi|336254994|ref|YP_004598101.1| - 0.0087 15.4 2.1 0.028 13.8 1.5 1.7 1 1 0 1 1 1 1 A2L zinc ribbon domain DUF164 PF02591.10 gi|336254994|ref|YP_004598101.1| - 0.0088 15.8 1.3 0.017 14.9 0.9 1.4 1 1 0 1 1 1 1 Putative zinc ribbon domain OrfB_Zn_ribbon PF07282.6 gi|336254994|ref|YP_004598101.1| - 0.026 14.1 1.2 0.053 13.1 0.8 1.5 1 1 0 1 1 1 0 Putative transposase DNA-binding domain DNA_ligase_ZBD PF03119.11 gi|336254994|ref|YP_004598101.1| - 0.031 13.9 3.7 0.033 13.9 0.0 2.6 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain zf-RING_3 PF14369.1 gi|336254994|ref|YP_004598101.1| - 0.039 13.9 0.6 2.9 7.9 0.0 2.2 2 0 0 2 2 2 0 zinc-finger Lar_restr_allev PF14354.1 gi|336254994|ref|YP_004598101.1| - 0.058 13.6 2.8 0.092 13.0 1.8 1.5 1 1 0 1 1 1 0 Restriction alleviation protein Lar FlhC PF05280.6 gi|336254994|ref|YP_004598101.1| - 0.072 12.5 0.1 0.084 12.3 0.1 1.1 1 0 0 1 1 1 0 Flagellar transcriptional activator (FlhC) Zn_Tnp_IS1595 PF12760.2 gi|336254994|ref|YP_004598101.1| - 0.077 12.8 3.1 0.49 10.2 2.0 2.0 1 1 1 2 2 2 0 Transposase zinc-ribbon domain DUF35_N PF12172.3 gi|336254994|ref|YP_004598101.1| - 0.085 12.7 2.8 5.3 7.0 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) IBR PF01485.16 gi|336254994|ref|YP_004598101.1| - 0.12 12.2 0.2 0.14 12.0 0.1 1.1 1 0 0 1 1 1 0 IBR domain zf-C4_Topoisom PF01396.14 gi|336254994|ref|YP_004598101.1| - 0.12 11.9 1.9 0.23 11.0 0.1 2.0 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger DNA_RNApol_7kD PF03604.8 gi|336254994|ref|YP_004598101.1| - 0.18 11.3 2.6 0.48 9.9 1.8 1.7 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-NADH-PPase PF09297.6 gi|336254994|ref|YP_004598101.1| - 0.2 11.2 4.4 2.7 7.5 0.3 2.4 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain DUF2752 PF10825.3 gi|336254994|ref|YP_004598101.1| - 0.21 11.6 1.8 2.6 8.1 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2752) DUF1272 PF06906.6 gi|336254994|ref|YP_004598101.1| - 0.25 11.2 3.3 0.35 10.7 0.2 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1272) Prim_Zn_Ribbon PF08273.7 gi|336254994|ref|YP_004598101.1| - 0.3 11.1 2.8 0.56 10.3 1.9 1.5 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase zf-tcix PF14952.1 gi|336254994|ref|YP_004598101.1| - 0.42 9.9 4.2 4.2 6.7 0.2 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding Auto_anti-p27 PF06677.7 gi|336254994|ref|YP_004598101.1| - 0.63 9.8 4.5 5.3 6.8 2.9 2.1 1 1 1 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) ADK_lid PF05191.9 gi|336254994|ref|YP_004598101.1| - 1.5 8.5 6.4 17 5.2 4.5 2.1 1 1 0 1 1 1 0 Adenylate kinase, active site lid YhfH PF14149.1 gi|336254994|ref|YP_004598101.1| - 2.7 7.8 5.0 79 3.1 2.9 2.2 1 1 0 1 1 1 0 YhfH-like protein zf-TFIIB PF13453.1 gi|336254994|ref|YP_004598101.1| - 3.2 7.0 5.1 2.3 7.5 0.5 1.8 1 1 2 3 3 3 0 Transcription factor zinc-finger PsbL PF02419.12 gi|336254995|ref|YP_004598102.1| - 0.022 14.1 2.7 0.053 12.9 1.3 1.9 2 0 0 2 2 2 0 PsbL protein Trypsin_2 PF13365.1 gi|336254997|ref|YP_004598104.1| - 6.5e-17 61.6 0.5 1e-16 60.9 0.3 1.3 1 0 0 1 1 1 1 Trypsin-like peptidase domain Trypsin PF00089.21 gi|336254997|ref|YP_004598104.1| - 5e-14 52.4 0.2 3.9e-13 49.4 0.1 1.9 1 1 0 1 1 1 1 Trypsin PDZ_2 PF13180.1 gi|336254997|ref|YP_004598104.1| - 5.8e-08 32.5 0.0 1.1e-07 31.6 0.0 1.5 1 0 0 1 1 1 1 PDZ domain PDZ PF00595.19 gi|336254997|ref|YP_004598104.1| - 0.00033 20.7 0.0 0.074 13.2 0.0 2.5 2 0 0 2 2 2 1 PDZ domain (Also known as DHR or GLGF) Peptidase_S32 PF05579.8 gi|336254997|ref|YP_004598104.1| - 0.022 13.7 0.8 0.76 8.6 0.1 2.1 2 0 0 2 2 2 0 Equine arteritis virus serine endopeptidase S32 Peptidase_S3 PF00944.14 gi|336254997|ref|YP_004598104.1| - 0.03 13.7 0.3 0.054 12.9 0.2 1.4 1 0 0 1 1 1 0 Alphavirus core protein TAT_signal PF10518.4 gi|336254997|ref|YP_004598104.1| - 0.6 10.2 5.2 1.4 9.1 3.6 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence THUMP PF02926.12 gi|336254998|ref|YP_004598105.1| - 1.1e-08 35.0 0.0 5.7e-08 32.7 0.0 1.9 2 0 0 2 2 2 1 THUMP domain DnaJ_CXXCXGXG PF00684.14 gi|336254998|ref|YP_004598105.1| - 0.0058 16.6 4.4 0.0093 15.9 0.6 2.7 3 0 0 3 3 3 1 DnaJ central domain Peptidase_S9 PF00326.16 gi|336254999|ref|YP_004598106.1| - 3.5e-47 160.3 0.0 5e-47 159.8 0.0 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_5 PF12695.2 gi|336254999|ref|YP_004598106.1| - 3.1e-11 43.2 0.1 7.5e-11 41.9 0.1 1.7 1 0 0 1 1 1 1 Alpha/beta hydrolase family DLH PF01738.13 gi|336254999|ref|YP_004598106.1| - 2.2e-06 27.1 0.0 4.4e-06 26.1 0.0 1.4 1 0 0 1 1 1 1 Dienelactone hydrolase family FSH1 PF03959.8 gi|336254999|ref|YP_004598106.1| - 0.00034 20.1 0.0 0.00058 19.3 0.0 1.3 1 0 0 1 1 1 1 Serine hydrolase (FSH1) Gmad1 PF10647.4 gi|336254999|ref|YP_004598106.1| - 0.055 12.8 15.8 3.3 7.0 0.6 4.3 2 2 1 3 3 3 0 Lipoprotein LpqB beta-propeller domain RNase_HII PF01351.13 gi|336255000|ref|YP_004598107.1| - 2.9e-34 118.4 0.0 7.7e-34 117.0 0.0 1.6 1 1 0 1 1 1 1 Ribonuclease HII SecD_SecF PF02355.11 gi|336255001|ref|YP_004598108.1| - 7.7e-14 51.3 3.4 1.9e-13 50.0 2.4 1.6 1 0 0 1 1 1 1 Protein export membrane protein MMPL PF03176.10 gi|336255001|ref|YP_004598108.1| - 0.0046 15.7 11.2 0.0096 14.6 7.8 1.4 1 0 0 1 1 1 1 MMPL family SecD_SecF PF02355.11 gi|336255002|ref|YP_004598109.1| - 1.7e-32 112.1 12.5 2.7e-32 111.5 8.7 1.3 1 0 0 1 1 1 1 Protein export membrane protein Sec_GG PF07549.9 gi|336255002|ref|YP_004598109.1| - 6.5e-05 21.9 0.0 0.00018 20.5 0.0 1.8 1 0 0 1 1 1 1 SecD/SecF GG Motif ACR_tran PF00873.14 gi|336255002|ref|YP_004598109.1| - 0.0039 14.6 7.5 0.0052 14.2 5.2 1.3 1 0 0 1 1 1 1 AcrB/AcrD/AcrF family Herpes_US9 PF06072.6 gi|336255002|ref|YP_004598109.1| - 0.27 11.1 0.1 0.27 11.1 0.0 3.4 4 0 0 4 4 4 0 Alphaherpesvirus tegument protein US9 Patched PF02460.13 gi|336255002|ref|YP_004598109.1| - 0.42 8.4 12.6 1 7.1 8.7 1.6 1 1 0 1 1 1 0 Patched family PGI PF00342.14 gi|336255005|ref|YP_004598112.1| - 7e-53 179.7 0.0 1e-52 179.1 0.0 1.1 1 0 0 1 1 1 1 Phosphoglucose isomerase Abi PF02517.11 gi|336255006|ref|YP_004598113.1| - 2.5e-14 53.1 1.5 2.5e-14 53.1 1.0 3.0 3 1 1 4 4 4 1 CAAX protease self-immunity Rad50_zn_hook PF04423.9 gi|336255007|ref|YP_004598114.1| - 0.0012 18.2 4.4 0.1 12.0 0.3 2.6 1 1 1 2 2 2 2 Rad50 zinc hook motif DUF4411 PF14367.1 gi|336255007|ref|YP_004598114.1| - 0.0028 17.3 0.1 0.21 11.2 0.0 2.2 1 1 1 2 2 2 1 Domain of unknown function (DUF4411) SprT-like PF10263.4 gi|336255007|ref|YP_004598114.1| - 0.0052 16.4 0.1 0.006 16.2 0.0 1.3 1 0 0 1 1 1 1 SprT-like family DUF3663 PF12404.3 gi|336255007|ref|YP_004598114.1| - 0.0082 15.8 0.0 0.02 14.6 0.0 1.7 1 0 0 1 1 1 1 Peptidase zf-C3HC4_3 PF13920.1 gi|336255007|ref|YP_004598114.1| - 0.0089 15.6 0.8 0.013 15.1 0.5 1.2 1 0 0 1 1 1 1 Zinc finger, C3HC4 type (RING finger) DNA_ligase_ZBD PF03119.11 gi|336255007|ref|YP_004598114.1| - 0.012 15.3 2.2 0.023 14.3 0.2 2.3 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain UPF0278 PF08745.6 gi|336255007|ref|YP_004598114.1| - 0.012 14.8 0.4 0.021 14.0 0.2 1.4 1 1 0 1 1 1 0 UPF0278 family DZR PF12773.2 gi|336255007|ref|YP_004598114.1| - 0.016 15.0 2.2 0.027 14.2 1.6 1.3 1 0 0 1 1 1 0 Double zinc ribbon PIN PF01850.16 gi|336255007|ref|YP_004598114.1| - 0.025 14.9 0.4 1.4 9.3 0.2 2.1 1 1 0 1 1 1 0 PIN domain zf-RING_5 PF14634.1 gi|336255007|ref|YP_004598114.1| - 0.027 14.1 0.6 0.04 13.6 0.4 1.3 1 0 0 1 1 1 0 zinc-RING finger domain Ribosomal_L37e PF01907.14 gi|336255007|ref|YP_004598114.1| - 0.043 13.6 0.8 0.069 12.9 0.6 1.3 1 0 0 1 1 1 0 Ribosomal protein L37e NOB1_Zn_bind PF08772.6 gi|336255007|ref|YP_004598114.1| - 0.059 13.2 0.3 0.11 12.3 0.2 1.4 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like Zn-ribbon_8 PF09723.5 gi|336255007|ref|YP_004598114.1| - 0.11 12.4 5.3 1.3 9.0 3.7 2.3 1 1 0 1 1 1 0 Zinc ribbon domain zf-C2H2_4 PF13894.1 gi|336255007|ref|YP_004598114.1| - 0.13 12.6 1.4 11 6.5 0.1 2.5 1 1 1 2 2 2 0 C2H2-type zinc finger zinc-ribbons_6 PF07191.7 gi|336255007|ref|YP_004598114.1| - 0.13 12.0 0.8 0.25 11.1 0.6 1.4 1 0 0 1 1 1 0 zinc-ribbons PIN_4 PF13638.1 gi|336255007|ref|YP_004598114.1| - 0.18 11.8 0.7 2.8 8.0 0.5 2.2 1 1 0 1 1 1 0 PIN domain HypA PF01155.14 gi|336255007|ref|YP_004598114.1| - 0.21 11.2 2.5 0.46 10.1 1.7 1.6 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-C2HC_2 PF13913.1 gi|336255007|ref|YP_004598114.1| - 0.6 9.8 6.8 0.4 10.4 0.2 2.2 2 0 0 2 2 2 0 zinc-finger of a C2HC-type zinc_ribbon_2 PF13240.1 gi|336255007|ref|YP_004598114.1| - 1.2 8.7 4.0 8.8 5.9 0.2 2.2 1 1 2 3 3 3 0 zinc-ribbon domain PRC PF05239.11 gi|336255008|ref|YP_004598115.1| - 5.2e-11 42.2 0.1 6.2e-11 42.0 0.1 1.1 1 0 0 1 1 1 1 PRC-barrel domain GTP_EFTU PF00009.22 gi|336255009|ref|YP_004598116.1| - 1.4e-31 109.3 0.0 1.2e-30 106.3 0.0 2.3 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain IF-2 PF11987.3 gi|336255009|ref|YP_004598116.1| - 2.4e-24 85.3 2.6 4.8e-24 84.3 0.8 2.3 2 0 0 2 2 2 1 Translation-initiation factor 2 GTP_EFTU_D2 PF03144.20 gi|336255009|ref|YP_004598116.1| - 8.7e-14 51.4 8.5 4.3e-10 39.5 0.1 3.1 3 0 0 3 3 3 2 Elongation factor Tu domain 2 GTP_EFTU_D4 PF14578.1 gi|336255009|ref|YP_004598116.1| - 2.6e-12 46.2 2.5 3.6e-12 45.7 0.0 2.5 3 0 0 3 3 3 1 Elongation factor Tu domain 4 MMR_HSR1 PF01926.18 gi|336255009|ref|YP_004598116.1| - 1.6e-06 28.0 0.0 5e-06 26.4 0.0 1.9 1 0 0 1 1 1 1 50S ribosome-binding GTPase Miro PF08477.8 gi|336255009|ref|YP_004598116.1| - 0.0013 19.2 0.0 0.0035 17.8 0.0 1.7 1 0 0 1 1 1 1 Miro-like protein ATP_bind_1 PF03029.12 gi|336255009|ref|YP_004598116.1| - 0.0027 17.2 0.0 0.0088 15.6 0.0 1.8 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein Dynamin_N PF00350.18 gi|336255009|ref|YP_004598116.1| - 0.0035 17.1 0.2 0.27 11.0 0.0 2.7 2 0 0 2 2 2 1 Dynamin family MobB PF03205.9 gi|336255009|ref|YP_004598116.1| - 0.075 12.7 0.8 0.44 10.2 0.0 2.4 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B FUSC PF04632.7 gi|336255010|ref|YP_004598117.1| - 0.06 11.7 5.9 0.068 11.5 4.1 1.0 1 0 0 1 1 1 0 Fusaric acid resistance protein family YwiC PF14256.1 gi|336255010|ref|YP_004598117.1| - 0.095 12.7 3.3 0.099 12.7 2.3 1.0 1 0 0 1 1 1 0 YwiC-like protein DUF3093 PF11292.3 gi|336255010|ref|YP_004598117.1| - 0.12 12.1 1.6 0.13 12.0 1.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3093) DUF4191 PF13829.1 gi|336255010|ref|YP_004598117.1| - 0.17 10.9 1.9 0.17 10.9 1.3 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) DUF4133 PF13571.1 gi|336255010|ref|YP_004598117.1| - 0.21 11.8 1.4 0.25 11.5 1.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4133) EmrE PF13536.1 gi|336255010|ref|YP_004598117.1| - 0.3 11.2 4.1 0.33 11.1 2.9 1.1 1 0 0 1 1 1 0 Multidrug resistance efflux transporter Yip1 PF04893.12 gi|336255010|ref|YP_004598117.1| - 0.57 9.6 6.8 0.72 9.3 4.7 1.1 1 0 0 1 1 1 0 Yip1 domain DUF4118 PF13493.1 gi|336255010|ref|YP_004598117.1| - 7.6 6.7 9.1 25 5.1 6.3 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4118) Cyclophil_like PF04126.8 gi|336255011|ref|YP_004598118.1| - 4e-28 97.4 0.0 4.3e-28 97.3 0.0 1.0 1 0 0 1 1 1 1 Cyclophilin-like DUF3830 PF12903.2 gi|336255011|ref|YP_004598118.1| - 0.015 14.6 0.1 0.019 14.3 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3830) bPH_6 PF10756.4 gi|336255012|ref|YP_004598119.1| - 0.0041 16.9 1.8 0.0057 16.5 0.3 2.0 2 0 0 2 2 2 1 Bacterial PH domain CTP_synth_N PF06418.9 gi|336255014|ref|YP_004598121.1| - 8.4e-128 425.2 0.1 1.2e-127 424.7 0.1 1.2 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.23 gi|336255014|ref|YP_004598121.1| - 5.9e-51 172.6 0.0 1.3e-50 171.5 0.0 1.6 2 0 0 2 2 2 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|336255014|ref|YP_004598121.1| - 3.9e-10 39.5 0.0 1.9e-08 34.0 0.0 2.2 1 1 0 1 1 1 1 Peptidase C26 CbiA PF01656.18 gi|336255014|ref|YP_004598121.1| - 7.8e-07 28.6 0.0 1.8e-06 27.5 0.0 1.6 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain GATase_3 PF07685.9 gi|336255014|ref|YP_004598121.1| - 0.009 15.6 0.0 0.018 14.6 0.0 1.6 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GMP_synt_C PF00958.17 gi|336255015|ref|YP_004598122.1| - 1.6e-28 98.2 0.4 4.2e-28 96.8 0.1 1.8 2 0 0 2 2 2 1 GMP synthase C terminal domain NAD_synthase PF02540.12 gi|336255015|ref|YP_004598122.1| - 2.7e-09 36.2 0.0 2.3e-05 23.4 0.0 2.2 2 0 0 2 2 2 2 NAD synthase tRNA_Me_trans PF03054.11 gi|336255015|ref|YP_004598122.1| - 1.8e-05 23.4 0.0 0.0011 17.5 0.0 2.2 2 0 0 2 2 2 2 tRNA methyl transferase Asn_synthase PF00733.16 gi|336255015|ref|YP_004598122.1| - 7.6e-05 22.3 0.1 0.0003 20.3 0.0 1.9 2 0 0 2 2 2 1 Asparagine synthase PAPS_reduct PF01507.14 gi|336255015|ref|YP_004598122.1| - 0.003 17.4 0.0 0.0054 16.5 0.0 1.5 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family ThiI PF02568.9 gi|336255015|ref|YP_004598122.1| - 0.0074 15.7 0.0 0.053 12.9 0.0 2.1 1 1 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) QueC PF06508.8 gi|336255015|ref|YP_004598122.1| - 0.017 14.4 0.0 0.046 13.0 0.0 1.7 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC 5-FTHF_cyc-lig PF01812.15 gi|336255017|ref|YP_004598124.1| - 1.2e-27 96.8 0.0 1.5e-27 96.5 0.0 1.1 1 0 0 1 1 1 1 5-formyltetrahydrofolate cyclo-ligase family MoCF_biosynth PF00994.19 gi|336255018|ref|YP_004598125.1| - 2.7e-21 75.4 0.3 3.5e-21 75.1 0.2 1.2 1 0 0 1 1 1 1 Probable molybdopterin binding domain ADH_zinc_N PF00107.21 gi|336255019|ref|YP_004598126.1| - 2.4e-35 120.8 0.0 4.3e-35 120.0 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|336255019|ref|YP_004598126.1| - 4.9e-28 97.0 0.1 8.1e-28 96.3 0.1 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N_2 PF13602.1 gi|336255019|ref|YP_004598126.1| - 2.8e-19 70.2 0.1 8.1e-19 68.7 0.0 1.8 2 0 0 2 2 2 1 Zinc-binding dehydrogenase NAD_binding_10 PF13460.1 gi|336255019|ref|YP_004598126.1| - 2.8e-05 24.1 0.1 0.0001 22.3 0.1 1.8 1 1 0 1 1 1 1 NADH(P)-binding Semialdhyde_dh PF01118.19 gi|336255019|ref|YP_004598126.1| - 0.0031 17.8 0.1 0.0067 16.7 0.0 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.16 gi|336255019|ref|YP_004598126.1| - 0.0032 17.0 0.3 0.014 14.9 0.1 1.9 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain Eno-Rase_NADH_b PF12242.3 gi|336255019|ref|YP_004598126.1| - 0.01 15.5 1.1 0.025 14.3 0.8 1.8 1 1 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase UCR_6-4kD PF08997.5 gi|336255019|ref|YP_004598126.1| - 0.077 12.7 1.4 0.093 12.4 0.0 1.9 2 0 0 2 2 2 0 Ubiquinol-cytochrome C reductase complex, 6.4kD protein DapB_N PF01113.15 gi|336255019|ref|YP_004598126.1| - 0.099 12.5 0.1 0.22 11.4 0.1 1.6 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus NADH_4Fe-4S PF10589.4 gi|336255019|ref|YP_004598126.1| - 0.39 9.9 2.4 0.98 8.6 1.7 1.6 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region NUDIX PF00293.23 gi|336255021|ref|YP_004598128.1| - 1.8e-11 43.7 0.5 2.4e-11 43.4 0.4 1.2 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.1 gi|336255021|ref|YP_004598128.1| - 0.015 14.7 0.1 0.027 13.9 0.1 1.6 1 1 0 1 1 1 0 NUDIX domain DAGK_cat PF00781.19 gi|336255022|ref|YP_004598129.1| - 7.5e-20 70.6 1.4 1.3e-19 69.8 0.7 1.7 2 0 0 2 2 2 1 Diacylglycerol kinase catalytic domain DUF4440 PF14534.1 gi|336255022|ref|YP_004598129.1| - 0.043 14.0 0.7 0.68 10.1 0.0 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF4440) NAD_kinase PF01513.16 gi|336255022|ref|YP_004598129.1| - 0.11 11.2 0.4 0.16 10.7 0.3 1.2 1 0 0 1 1 1 0 ATP-NAD kinase PHP_C PF13263.1 gi|336255023|ref|YP_004598130.1| - 4.5e-18 64.5 0.2 1.3e-17 62.9 0.0 2.0 2 0 0 2 2 2 1 PHP-associated PHP PF02811.14 gi|336255023|ref|YP_004598130.1| - 2.1e-05 24.4 0.0 4.5e-05 23.3 0.0 1.5 1 1 0 1 1 1 1 PHP domain HTH_AsnC-type PF13404.1 gi|336255024|ref|YP_004598131.1| - 5.2e-19 67.4 1.9 2.1e-17 62.3 0.7 2.3 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|336255024|ref|YP_004598131.1| - 2.5e-15 55.5 0.1 1.2e-14 53.3 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.16 gi|336255024|ref|YP_004598131.1| - 6.6e-11 41.7 0.6 6.6e-11 41.7 0.4 1.6 2 0 0 2 2 2 1 AsnC family Sigma70_r4_2 PF08281.7 gi|336255024|ref|YP_004598131.1| - 3.4e-05 23.2 0.0 8.8e-05 21.8 0.0 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_Tnp_ISL3 PF13542.1 gi|336255024|ref|YP_004598131.1| - 0.0003 19.8 0.3 0.0051 15.9 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 Sigma70_r4 PF04545.11 gi|336255024|ref|YP_004598131.1| - 0.0009 18.5 0.0 0.0017 17.6 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_20 PF12840.2 gi|336255024|ref|YP_004598131.1| - 0.00094 18.9 0.0 0.0016 18.1 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|336255024|ref|YP_004598131.1| - 0.0018 17.8 0.0 0.003 17.1 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|336255024|ref|YP_004598131.1| - 0.0019 17.7 0.1 0.0055 16.3 0.0 1.7 1 1 1 2 2 2 1 HTH domain GerE PF00196.14 gi|336255024|ref|YP_004598131.1| - 0.0035 16.6 0.0 0.014 14.6 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family HTH_IclR PF09339.5 gi|336255024|ref|YP_004598131.1| - 0.0073 15.8 0.0 0.011 15.2 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain GYD PF08734.6 gi|336255024|ref|YP_004598131.1| - 0.012 15.2 1.0 0.052 13.2 0.1 2.2 1 1 0 2 2 2 0 GYD domain HTH_23 PF13384.1 gi|336255024|ref|YP_004598131.1| - 0.013 15.0 0.0 0.027 14.1 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain DUF692 PF05114.8 gi|336255024|ref|YP_004598131.1| - 0.017 14.0 0.2 0.021 13.7 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF692) HrcA_DNA-bdg PF03444.10 gi|336255024|ref|YP_004598131.1| - 0.019 14.3 0.0 0.041 13.3 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_DeoR PF08220.7 gi|336255024|ref|YP_004598131.1| - 0.019 14.4 0.2 0.1 12.1 0.0 2.1 1 1 1 2 2 2 0 DeoR-like helix-turn-helix domain MarR PF01047.17 gi|336255024|ref|YP_004598131.1| - 0.041 13.5 0.0 0.072 12.8 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_38 PF13936.1 gi|336255024|ref|YP_004598131.1| - 0.056 13.0 0.1 0.1 12.1 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain DUF746 PF05344.6 gi|336255024|ref|YP_004598131.1| - 0.056 12.9 0.3 0.41 10.2 0.0 2.3 3 0 0 3 3 2 0 Domain of Unknown Function (DUF746) NapD PF03927.8 gi|336255024|ref|YP_004598131.1| - 0.057 13.2 0.3 0.1 12.4 0.2 1.5 1 0 0 1 1 1 0 NapD protein TrmB PF01978.14 gi|336255024|ref|YP_004598131.1| - 0.061 13.0 0.0 0.13 12.0 0.0 1.5 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB KorB PF08535.5 gi|336255024|ref|YP_004598131.1| - 0.061 13.4 0.1 0.86 9.7 0.0 2.0 1 1 1 2 2 2 0 KorB domain HTH_Mga PF08280.6 gi|336255024|ref|YP_004598131.1| - 0.11 12.2 0.0 0.17 11.6 0.0 1.3 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain CPSase_sm_chain PF00988.17 gi|336255025|ref|YP_004598132.1| - 6e-36 122.8 0.0 7.2e-35 119.3 0.0 2.3 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.23 gi|336255025|ref|YP_004598132.1| - 1.9e-35 122.0 0.0 3.2e-35 121.3 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|336255025|ref|YP_004598132.1| - 4.1e-08 32.9 0.1 7.6e-06 25.5 0.1 2.2 1 1 0 1 1 1 1 Peptidase C26 DJ-1_PfpI PF01965.19 gi|336255025|ref|YP_004598132.1| - 0.00011 21.6 0.4 0.00025 20.5 0.1 1.7 1 1 0 1 1 1 1 DJ-1/PfpI family Transgly_assoc PF04226.8 gi|336255026|ref|YP_004598133.1| - 0.25 11.4 0.3 0.25 11.4 0.2 3.8 3 2 1 4 4 4 0 Transglycosylase associated protein FtsX PF02687.16 gi|336255026|ref|YP_004598133.1| - 1.4 8.6 6.2 7.1 6.4 4.2 2.2 1 1 0 1 1 1 0 FtsX-like permease family DUF4341 PF14241.1 gi|336255026|ref|YP_004598133.1| - 3.1 7.5 12.5 4.9 6.9 0.2 3.4 3 0 0 3 3 3 0 Domain of unknown function (DUF4341) FAD_binding_3 PF01494.14 gi|336255027|ref|YP_004598134.1| - 3.2e-06 26.4 0.9 0.0012 18.0 0.1 2.5 1 1 1 2 2 2 2 FAD binding domain Pyr_redox_2 PF07992.9 gi|336255027|ref|YP_004598134.1| - 1.4e-05 25.0 0.4 3.1e-05 23.9 0.0 1.8 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|336255027|ref|YP_004598134.1| - 8.6e-05 21.7 1.2 0.00089 18.4 0.6 2.4 3 0 0 3 3 3 1 FAD dependent oxidoreductase DAO PF01266.19 gi|336255027|ref|YP_004598134.1| - 0.00014 20.9 3.9 0.0043 15.9 0.3 2.7 2 1 1 3 3 3 2 FAD dependent oxidoreductase GIDA PF01134.17 gi|336255027|ref|YP_004598134.1| - 0.00022 20.2 0.8 0.0003 19.7 0.1 1.5 2 0 0 2 2 2 1 Glucose inhibited division protein A FAD_binding_2 PF00890.19 gi|336255027|ref|YP_004598134.1| - 0.00043 19.2 3.2 0.0014 17.5 0.2 2.4 2 1 0 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.1 gi|336255027|ref|YP_004598134.1| - 0.00097 19.1 0.1 0.0029 17.5 0.0 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|336255027|ref|YP_004598134.1| - 0.0018 16.8 0.0 0.005 15.3 0.1 1.6 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_3 PF13738.1 gi|336255027|ref|YP_004598134.1| - 0.031 14.3 0.0 1.4 8.9 0.0 2.2 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|336255027|ref|YP_004598134.1| - 0.039 14.3 0.1 0.1 13.0 0.0 1.7 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.9 gi|336255027|ref|YP_004598134.1| - 0.075 11.6 2.0 0.28 9.7 0.0 2.2 2 0 0 2 2 2 0 Tryptophan halogenase Thi4 PF01946.12 gi|336255027|ref|YP_004598134.1| - 0.15 11.1 0.1 0.65 9.0 0.1 1.9 2 0 0 2 2 2 0 Thi4 family 3HCDH_N PF02737.13 gi|336255027|ref|YP_004598134.1| - 0.17 11.5 0.3 0.48 10.0 0.0 1.8 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Peripla_BP_2 PF01497.13 gi|336255028|ref|YP_004598135.1| - 1.8e-18 66.5 0.0 2.5e-18 66.1 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein TAT_signal PF10518.4 gi|336255028|ref|YP_004598135.1| - 0.0021 17.9 0.8 0.0046 16.8 0.6 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Nudix_N PF12535.3 gi|336255028|ref|YP_004598135.1| - 0.13 11.7 0.4 0.26 10.7 0.3 1.4 1 0 0 1 1 1 0 Hydrolase of X-linked nucleoside diphosphate N terminal SIMPL PF04402.9 gi|336255029|ref|YP_004598136.1| - 9.6e-37 126.8 3.2 1.3e-36 126.4 2.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF541) TAT_signal PF10518.4 gi|336255029|ref|YP_004598136.1| - 0.0013 18.5 4.7 0.0028 17.5 3.2 1.6 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence OsmC PF02566.14 gi|336255029|ref|YP_004598136.1| - 0.099 12.8 2.3 0.37 11.0 0.1 2.4 2 1 0 2 2 2 0 OsmC-like protein PALP PF00291.20 gi|336255030|ref|YP_004598137.1| - 1.2e-51 175.8 4.5 1.4e-51 175.6 3.1 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Abhydrolase_6 PF12697.2 gi|336255030|ref|YP_004598137.1| - 0.045 13.6 0.6 0.11 12.4 0.2 1.8 2 0 0 2 2 2 0 Alpha/beta hydrolase family AICARFT_IMPCHas PF01808.13 gi|336255031|ref|YP_004598138.1| - 3.9e-87 292.2 0.0 5.2e-87 291.8 0.0 1.1 1 0 0 1 1 1 1 AICARFT/IMPCHase bienzyme Formyl_trans_N PF00551.14 gi|336255031|ref|YP_004598138.1| - 7.5e-34 116.8 0.0 1.4e-32 112.7 0.0 2.4 1 1 0 1 1 1 1 Formyl transferase CoA_binding_2 PF13380.1 gi|336255031|ref|YP_004598138.1| - 0.0074 16.4 0.2 1.1 9.3 0.0 3.2 3 0 0 3 3 3 1 CoA binding domain Toxin_25 PF08095.6 gi|336255031|ref|YP_004598138.1| - 0.12 12.1 0.2 0.3 10.8 0.1 1.7 1 0 0 1 1 1 0 Hefutoxin family Lyase_1 PF00206.15 gi|336255032|ref|YP_004598139.1| - 6.1e-51 173.4 0.0 7.9e-51 173.0 0.0 1.1 1 0 0 1 1 1 1 Lyase ASL_C PF08328.6 gi|336255032|ref|YP_004598139.1| - 2.3e-41 140.2 0.0 4.6e-41 139.2 0.0 1.5 1 0 0 1 1 1 1 Adenylosuccinate lyase C-terminal EamA PF00892.15 gi|336255033|ref|YP_004598140.1| - 1.8e-08 34.4 11.5 2.2e-08 34.1 8.0 1.1 1 0 0 1 1 1 1 EamA-like transporter family Sugar_transport PF06800.7 gi|336255033|ref|YP_004598140.1| - 0.002 17.2 2.8 0.0023 17.0 1.7 1.4 1 1 0 1 1 1 1 Sugar transport protein TPT PF03151.11 gi|336255033|ref|YP_004598140.1| - 0.3 10.7 7.7 1.8 8.1 0.6 2.5 2 1 0 2 2 2 0 Triose-phosphate Transporter family EmrE PF13536.1 gi|336255033|ref|YP_004598140.1| - 1.6 8.9 17.0 0.047 13.8 3.8 2.4 1 1 0 2 2 2 0 Multidrug resistance efflux transporter Bax1-I PF01027.15 gi|336255033|ref|YP_004598140.1| - 2 8.0 16.2 2.4 7.7 11.2 1.0 1 0 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 EmrE PF13536.1 gi|336255034|ref|YP_004598141.1| - 2.1e-08 34.3 7.0 2.1e-08 34.3 4.9 1.6 1 1 1 2 2 2 1 Multidrug resistance efflux transporter EamA PF00892.15 gi|336255034|ref|YP_004598141.1| - 2.7e-06 27.4 5.1 2.7e-06 27.4 3.6 2.0 1 1 1 2 2 2 2 EamA-like transporter family Sugar_transport PF06800.7 gi|336255034|ref|YP_004598141.1| - 0.00068 18.8 3.9 0.00084 18.5 2.7 1.1 1 0 0 1 1 1 1 Sugar transport protein Multi_Drug_Res PF00893.14 gi|336255034|ref|YP_004598141.1| - 0.24 11.9 9.1 0.76 10.2 2.1 2.3 1 1 1 2 2 2 0 Small Multidrug Resistance protein 7TMR-DISM_7TM PF07695.6 gi|336255034|ref|YP_004598141.1| - 1 8.9 14.5 1.4 8.5 2.8 2.0 1 1 1 2 2 2 0 7TM diverse intracellular signalling DUF3180 PF11377.3 gi|336255034|ref|YP_004598141.1| - 1.3 8.8 12.3 0.036 13.9 2.7 2.2 1 1 2 3 3 3 0 Protein of unknown function (DUF3180) MerC PF03203.9 gi|336255034|ref|YP_004598141.1| - 9 6.7 11.1 22 5.4 7.7 1.7 1 1 0 1 1 1 0 MerC mercury resistance protein Peptidase_M20 PF01546.23 gi|336255035|ref|YP_004598142.1| - 2.4e-25 89.1 0.2 3e-25 88.8 0.2 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|336255035|ref|YP_004598142.1| - 6.8e-18 64.4 0.0 1.2e-17 63.6 0.0 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain Orn_Arg_deC_N PF02784.11 gi|336255036|ref|YP_004598143.1| - 2.6e-38 131.6 0.0 3.4e-38 131.2 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.17 gi|336255036|ref|YP_004598143.1| - 1.6e-17 63.2 0.0 2.2e-17 62.8 0.0 1.3 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Ala_racemase_N PF01168.15 gi|336255036|ref|YP_004598143.1| - 2e-08 34.0 0.0 3.1e-08 33.4 0.0 1.4 1 0 0 1 1 1 1 Alanine racemase, N-terminal domain THDPS_N_2 PF14805.1 gi|336255038|ref|YP_004598145.1| - 6.7e-19 67.5 0.5 9.8e-19 67.0 0.3 1.3 1 0 0 1 1 1 1 Tetrahydrodipicolinate N-succinyltransferase N-terminal Hexapep PF00132.19 gi|336255038|ref|YP_004598145.1| - 1.2e-13 49.9 5.5 4.4e-06 25.9 0.2 3.3 2 1 0 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|336255038|ref|YP_004598145.1| - 1e-07 31.3 10.4 9.9e-07 28.2 0.6 3.1 2 1 0 2 2 2 2 Hexapeptide repeat of succinyl-transferase DapB_C PF05173.9 gi|336255039|ref|YP_004598146.1| - 2.7e-37 127.5 0.1 3.8e-37 127.0 0.0 1.2 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, C-terminus DapB_N PF01113.15 gi|336255039|ref|YP_004598146.1| - 7.9e-31 106.5 0.1 3.1e-30 104.6 0.0 1.9 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus NAD_binding_10 PF13460.1 gi|336255039|ref|YP_004598146.1| - 2.2e-06 27.7 0.7 3.3e-06 27.2 0.5 1.3 1 0 0 1 1 1 1 NADH(P)-binding NAD_binding_3 PF03447.11 gi|336255039|ref|YP_004598146.1| - 3e-06 27.5 0.2 6.2e-06 26.6 0.1 1.4 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain Semialdhyde_dh PF01118.19 gi|336255039|ref|YP_004598146.1| - 4.8e-06 26.8 0.0 7.6e-06 26.2 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Saccharop_dh PF03435.13 gi|336255039|ref|YP_004598146.1| - 1.6e-05 24.1 0.1 2.7e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase GFO_IDH_MocA PF01408.17 gi|336255039|ref|YP_004598146.1| - 4e-05 24.1 0.0 7.3e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold CoA_binding PF02629.14 gi|336255039|ref|YP_004598146.1| - 0.00065 20.1 0.1 0.0015 19.0 0.1 1.6 1 0 0 1 1 1 1 CoA binding domain RmlD_sub_bind PF04321.12 gi|336255039|ref|YP_004598146.1| - 0.00078 18.4 0.0 0.0013 17.6 0.0 1.4 1 0 0 1 1 1 1 RmlD substrate binding domain ADH_zinc_N PF00107.21 gi|336255039|ref|YP_004598146.1| - 0.0014 18.1 0.2 0.0025 17.3 0.1 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Epimerase PF01370.16 gi|336255039|ref|YP_004598146.1| - 0.0017 17.8 0.1 0.0051 16.2 0.0 1.8 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family CoA_binding_2 PF13380.1 gi|336255039|ref|YP_004598146.1| - 0.002 18.2 0.1 0.0036 17.4 0.1 1.5 1 0 0 1 1 1 1 CoA binding domain NmrA PF05368.8 gi|336255039|ref|YP_004598146.1| - 0.005 16.1 0.0 0.0082 15.4 0.0 1.5 1 0 0 1 1 1 1 NmrA-like family adh_short PF00106.20 gi|336255039|ref|YP_004598146.1| - 0.039 13.8 0.5 0.082 12.8 0.3 1.6 1 1 0 1 1 1 0 short chain dehydrogenase Gp_dh_N PF00044.19 gi|336255039|ref|YP_004598146.1| - 0.083 12.8 0.2 0.49 10.3 0.0 2.2 2 1 1 3 3 3 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DHDPS PF00701.17 gi|336255040|ref|YP_004598147.1| - 5.4e-95 317.3 0.0 6.2e-95 317.1 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family ThiG PF05690.9 gi|336255040|ref|YP_004598147.1| - 0.019 14.0 0.0 0.031 13.3 0.0 1.2 1 0 0 1 1 1 0 Thiazole biosynthesis protein ThiG NMO PF03060.10 gi|336255040|ref|YP_004598147.1| - 0.059 12.5 0.5 0.1 11.7 0.3 1.3 1 0 0 1 1 1 0 Nitronate monooxygenase PA PF02225.17 gi|336255040|ref|YP_004598147.1| - 0.09 12.4 0.0 0.47 10.1 0.0 2.1 1 1 1 2 2 2 0 PA domain Peptidase_M48 PF01435.13 gi|336255041|ref|YP_004598148.1| - 2.4e-39 135.2 0.0 3.1e-39 134.8 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|336255041|ref|YP_004598148.1| - 1.9e-07 30.4 0.1 1.7e-06 27.2 0.0 2.1 2 0 0 2 2 2 1 BlaR1 peptidase M56 Peptidase_MA_2 PF13485.1 gi|336255041|ref|YP_004598148.1| - 0.044 13.8 0.0 0.11 12.4 0.0 1.7 1 0 0 1 1 1 0 Peptidase MA superfamily SprT-like PF10263.4 gi|336255041|ref|YP_004598148.1| - 0.046 13.3 0.0 0.067 12.8 0.0 1.2 1 0 0 1 1 1 0 SprT-like family RhodobacterPufX PF11511.3 gi|336255041|ref|YP_004598148.1| - 0.21 11.0 5.6 1.1 8.6 1.2 2.6 2 0 0 2 2 2 0 Intrinsic membrane protein PufX Orai-1 PF07856.7 gi|336255041|ref|YP_004598148.1| - 2.9 7.4 5.5 12 5.4 3.8 1.9 1 1 0 1 1 1 0 Mediator of CRAC channel activity NYN PF01936.13 gi|336255042|ref|YP_004598149.1| - 1.3e-38 132.5 0.3 1.6e-38 132.3 0.2 1.0 1 0 0 1 1 1 1 NYN domain Amidohydro_3 PF07969.6 gi|336255042|ref|YP_004598149.1| - 0.11 11.6 0.0 0.13 11.4 0.0 1.0 1 0 0 1 1 1 0 Amidohydrolase family TGT_C2 PF14810.1 gi|336255044|ref|YP_004598151.1| - 1.2e-25 89.1 0.0 2.4e-25 88.1 0.0 1.5 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.15 gi|336255044|ref|YP_004598151.1| - 1.3e-19 69.6 0.3 2.1e-19 68.9 0.2 1.3 1 0 0 1 1 1 1 PUA domain MtrD PF04207.7 gi|336255045|ref|YP_004598152.1| - 0.0023 17.3 1.2 0.0027 17.1 0.9 1.0 1 0 0 1 1 1 1 Tetrahydromethanopterin S-methyltransferase, subunit D Zip PF02535.17 gi|336255045|ref|YP_004598152.1| - 0.43 9.5 3.1 0.47 9.4 2.2 1.1 1 0 0 1 1 1 0 ZIP Zinc transporter NAC PF01849.13 gi|336255046|ref|YP_004598153.1| - 2.6e-16 58.8 0.1 3.6e-16 58.4 0.1 1.2 1 0 0 1 1 1 1 NAC domain UBA PF00627.26 gi|336255046|ref|YP_004598153.1| - 1.6e-06 27.7 4.4 1.9e-06 27.5 0.2 2.2 2 0 0 2 2 2 1 UBA/TS-N domain UBA_4 PF14555.1 gi|336255046|ref|YP_004598153.1| - 0.0016 17.9 0.4 0.0036 16.8 0.3 1.6 1 0 0 1 1 1 1 UBA-like domain CUE PF02845.11 gi|336255046|ref|YP_004598153.1| - 0.017 14.5 0.2 0.017 14.5 0.1 2.1 2 0 0 2 2 2 0 CUE domain PTS_IIB PF02302.12 gi|336255046|ref|YP_004598153.1| - 0.11 12.9 0.3 0.27 11.7 0.1 1.7 2 0 0 2 2 2 0 PTS system, Lactose/Cellobiose specific IIB subunit GCD14 PF08704.5 gi|336255047|ref|YP_004598154.1| - 3.6e-18 65.9 0.1 1.2e-14 54.4 0.0 2.1 1 1 1 2 2 2 2 tRNA methyltransferase complex GCD14 subunit Methyltransf_18 PF12847.2 gi|336255047|ref|YP_004598154.1| - 1.8e-13 51.0 0.2 3.1e-13 50.2 0.2 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|336255047|ref|YP_004598154.1| - 1.5e-12 47.5 1.8 9.2e-12 45.0 1.3 2.1 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|336255047|ref|YP_004598154.1| - 8.8e-10 38.3 0.0 1.1e-09 38.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|336255047|ref|YP_004598154.1| - 1.5e-08 34.2 0.2 4.9e-08 32.5 0.1 1.7 1 1 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.8 gi|336255047|ref|YP_004598154.1| - 2.4e-07 30.1 0.5 3e-07 29.8 0.3 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_23 PF13489.1 gi|336255047|ref|YP_004598154.1| - 1.4e-06 28.1 0.0 2.8e-06 27.1 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.12 gi|336255047|ref|YP_004598154.1| - 2.2e-06 26.8 0.0 2.8e-06 26.5 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_24 PF13578.1 gi|336255047|ref|YP_004598154.1| - 2.8e-06 28.1 0.4 7.7e-06 26.6 0.2 1.7 2 0 0 2 2 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|336255047|ref|YP_004598154.1| - 4.8e-06 25.7 0.0 7.1e-06 25.2 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_11 PF08241.7 gi|336255047|ref|YP_004598154.1| - 1e-05 25.9 0.3 1.8e-05 25.0 0.2 1.4 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|336255047|ref|YP_004598154.1| - 2.6e-05 23.8 0.1 3.4e-05 23.4 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_15 PF09445.5 gi|336255047|ref|YP_004598154.1| - 0.00052 19.6 0.0 0.00071 19.1 0.0 1.1 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Cons_hypoth95 PF03602.10 gi|336255047|ref|YP_004598154.1| - 0.001 18.5 0.1 0.0014 18.0 0.1 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_12 PF08242.7 gi|336255047|ref|YP_004598154.1| - 0.0031 17.9 0.2 0.0063 16.9 0.1 1.5 1 1 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|336255047|ref|YP_004598154.1| - 0.008 15.5 0.2 0.013 14.9 0.2 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Met_10 PF02475.11 gi|336255047|ref|YP_004598154.1| - 0.008 15.7 0.0 0.012 15.2 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_25 PF13649.1 gi|336255047|ref|YP_004598154.1| - 0.014 15.7 0.1 0.021 15.1 0.1 1.4 1 0 0 1 1 1 0 Methyltransferase domain CMAS PF02353.15 gi|336255047|ref|YP_004598154.1| - 0.022 13.8 0.0 0.027 13.5 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Phage_sheath_1 PF04984.9 gi|336255047|ref|YP_004598154.1| - 0.023 13.1 0.1 0.03 12.8 0.1 1.1 1 0 0 1 1 1 0 Phage tail sheath protein UPF0020 PF01170.13 gi|336255047|ref|YP_004598154.1| - 0.034 13.7 0.2 0.055 13.0 0.1 1.2 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 ADH_zinc_N PF00107.21 gi|336255047|ref|YP_004598154.1| - 0.1 12.1 0.7 0.16 11.5 0.5 1.2 1 0 0 1 1 1 0 Zinc-binding dehydrogenase TFIIS_C PF01096.13 gi|336255048|ref|YP_004598155.1| - 2.5e-19 68.5 4.8 2.5e-19 68.5 3.3 3.0 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.11 gi|336255048|ref|YP_004598155.1| - 1.6e-08 34.1 1.2 1.6e-08 34.1 0.8 2.9 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit DZR PF12773.2 gi|336255048|ref|YP_004598155.1| - 1.7e-07 30.9 6.0 0.00081 19.1 0.4 2.3 2 0 0 2 2 2 2 Double zinc ribbon Zn_Tnp_IS1595 PF12760.2 gi|336255048|ref|YP_004598155.1| - 2.9e-05 23.7 9.3 0.0032 17.2 1.1 2.8 2 2 0 2 2 2 2 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|336255048|ref|YP_004598155.1| - 9e-05 21.7 10.1 0.00044 19.5 0.4 3.6 3 2 0 3 3 3 1 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.6 gi|336255048|ref|YP_004598155.1| - 0.0002 20.9 10.4 0.014 15.0 0.6 2.6 2 1 0 2 2 2 2 Putative transposase DNA-binding domain PhnA_Zn_Ribbon PF08274.7 gi|336255048|ref|YP_004598155.1| - 0.00032 20.3 10.0 0.00044 19.9 0.9 3.1 3 0 0 3 3 3 1 PhnA Zinc-Ribbon DUF2387 PF09526.5 gi|336255048|ref|YP_004598155.1| - 0.00069 19.4 6.1 0.042 13.7 0.9 2.3 2 0 0 2 2 2 2 Probable metal-binding protein (DUF2387) zf-ribbon_3 PF13248.1 gi|336255048|ref|YP_004598155.1| - 0.0015 17.6 8.5 0.61 9.3 0.1 3.8 4 0 0 4 4 4 2 zinc-ribbon domain RRN7 PF11781.3 gi|336255048|ref|YP_004598155.1| - 0.0085 15.5 10.4 12 5.5 0.1 4.2 3 1 0 3 3 3 0 RNA polymerase I-specific transcription initiation factor Rrn7 FdhE PF04216.7 gi|336255048|ref|YP_004598155.1| - 0.0096 15.6 0.5 0.0096 15.6 0.3 2.2 1 1 0 2 2 2 1 Protein involved in formate dehydrogenase formation HypA PF01155.14 gi|336255048|ref|YP_004598155.1| - 0.04 13.6 9.2 0.4 10.3 0.4 3.0 1 1 2 3 3 3 0 Hydrogenase expression/synthesis hypA family ArfGap PF01412.13 gi|336255048|ref|YP_004598155.1| - 0.12 12.1 0.3 0.12 12.1 0.2 2.1 2 1 0 2 2 2 0 Putative GTPase activating protein for Arf Prok-RING_1 PF14446.1 gi|336255048|ref|YP_004598155.1| - 0.15 11.7 8.3 0.57 9.9 0.6 3.1 3 0 0 3 3 3 0 Prokaryotic RING finger family 1 zf-UBP PF02148.14 gi|336255048|ref|YP_004598155.1| - 0.21 11.7 5.2 1.6 8.8 0.2 2.4 2 1 0 2 2 2 0 Zn-finger in ubiquitin-hydrolases and other protein zf-ISL3 PF14690.1 gi|336255048|ref|YP_004598155.1| - 0.22 11.5 6.0 0.6 10.1 0.0 3.5 4 0 0 4 4 4 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Nudix_N_2 PF14803.1 gi|336255048|ref|YP_004598155.1| - 0.23 11.1 14.1 3 7.5 0.0 4.0 3 1 0 3 3 3 0 Nudix N-terminal DUF3797 PF12677.2 gi|336255048|ref|YP_004598155.1| - 0.23 11.0 0.0 0.23 11.0 0.0 2.9 3 1 1 4 4 3 0 Domain of unknown function (DUF3797) zinc_ribbon_2 PF13240.1 gi|336255048|ref|YP_004598155.1| - 0.47 9.9 0.2 0.47 9.9 0.1 3.8 3 1 0 3 3 3 0 zinc-ribbon domain zf-RING_4 PF14570.1 gi|336255048|ref|YP_004598155.1| - 0.66 9.6 9.9 6 6.5 0.1 3.2 3 0 0 3 3 3 0 RING/Ubox like zinc-binding domain Terminase_GpA PF05876.7 gi|336255048|ref|YP_004598155.1| - 0.92 7.7 6.7 0.67 8.2 4.2 1.3 1 1 0 1 1 1 0 Phage terminase large subunit (GpA) DNA_RNApol_7kD PF03604.8 gi|336255048|ref|YP_004598155.1| - 1.1 8.7 10.8 25 4.4 0.1 3.7 3 1 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit zf-RING_5 PF14634.1 gi|336255048|ref|YP_004598155.1| - 1.6 8.5 10.3 2 8.1 1.6 3.0 1 1 1 2 2 2 0 zinc-RING finger domain Ribosomal_L37ae PF01780.14 gi|336255048|ref|YP_004598155.1| - 2.1 8.2 6.9 0.45 10.4 0.3 2.5 1 1 1 2 2 2 0 Ribosomal L37ae protein family Zn-ribbon_8 PF09723.5 gi|336255048|ref|YP_004598155.1| - 2.2 8.3 13.2 2.9 7.9 0.0 3.8 3 2 0 3 3 3 0 Zinc ribbon domain TerY-C PF15616.1 gi|336255048|ref|YP_004598155.1| - 2.3 8.1 7.1 0.1 12.5 0.4 1.8 1 1 1 2 2 2 0 TerY-C metal binding domain A2L_zn_ribbon PF08792.5 gi|336255048|ref|YP_004598155.1| - 2.4 7.6 13.5 22 4.6 2.5 4.0 3 1 1 4 4 4 0 A2L zinc ribbon domain Lar_restr_allev PF14354.1 gi|336255048|ref|YP_004598155.1| - 2.6 8.4 12.4 2 8.8 1.1 2.9 1 1 1 2 2 2 0 Restriction alleviation protein Lar Auto_anti-p27 PF06677.7 gi|336255048|ref|YP_004598155.1| - 2.7 7.8 14.1 1.2 9.0 1.1 2.6 3 0 0 3 3 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-C4_Topoisom PF01396.14 gi|336255048|ref|YP_004598155.1| - 5.6 6.5 9.6 2.7 7.5 0.1 3.2 4 0 0 4 4 4 0 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_5 PF13719.1 gi|336255048|ref|YP_004598155.1| - 5.8 6.5 10.8 15 5.2 0.6 3.8 3 1 0 3 3 3 0 zinc-ribbon domain zinc-ribbons_6 PF07191.7 gi|336255048|ref|YP_004598155.1| - 7.3 6.4 9.2 13 5.6 0.3 2.9 2 1 1 3 3 3 0 zinc-ribbons Ogr_Delta PF04606.7 gi|336255048|ref|YP_004598155.1| - 9.1 6.0 12.6 2.7 7.6 2.3 3.0 3 1 0 3 3 3 0 Ogr/Delta-like zinc finger Cob_adeno_trans PF01923.13 gi|336255049|ref|YP_004598156.1| - 0.023 14.5 1.7 0.066 12.9 0.2 2.4 2 1 0 2 2 2 0 Cobalamin adenosyltransferase TarH PF02203.10 gi|336255049|ref|YP_004598156.1| - 1.4 8.7 8.0 5.8 6.7 0.1 3.3 1 1 1 3 3 3 0 Tar ligand binding domain homologue MFS_1 PF07690.11 gi|336255051|ref|YP_004598158.1| - 2.2e-48 164.7 52.1 1.8e-26 92.7 13.4 2.1 1 1 0 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|336255051|ref|YP_004598158.1| - 1.8e-11 43.3 29.0 9.8e-09 34.2 3.4 3.2 1 1 1 3 3 3 2 Sugar (and other) transporter MFS_1_like PF12832.2 gi|336255051|ref|YP_004598158.1| - 0.008 15.9 0.1 0.37 10.5 0.0 3.0 2 0 0 2 2 2 1 MFS_1 like family Phage_holin_6 PF10746.4 gi|336255051|ref|YP_004598158.1| - 0.015 14.9 0.8 0.015 14.9 0.6 3.1 2 1 0 2 2 2 0 Phage holin family 6 ALMT PF11744.3 gi|336255051|ref|YP_004598158.1| - 0.024 13.3 0.0 0.039 12.6 0.0 1.2 1 0 0 1 1 1 0 Aluminium activated malate transporter DUF4212 PF13937.1 gi|336255051|ref|YP_004598158.1| - 1.3 9.1 5.0 0.84 9.6 0.1 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF4212) PqqD PF05402.7 gi|336255052|ref|YP_004598159.1| - 0.0091 15.9 0.1 0.02 14.8 0.1 1.8 1 1 0 1 1 1 1 Coenzyme PQQ synthesis protein D (PqqD) Abhydrolase_6 PF12697.2 gi|336255053|ref|YP_004598160.1| - 1.1e-33 117.0 2.9 1.3e-33 116.8 2.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|336255053|ref|YP_004598160.1| - 2.6e-13 49.9 0.0 4.3e-12 46.0 0.0 2.1 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|336255053|ref|YP_004598160.1| - 8e-06 25.5 0.0 9.9e-05 21.9 0.0 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.3 gi|336255053|ref|YP_004598160.1| - 0.00017 21.3 0.0 0.00037 20.3 0.0 1.6 1 0 0 1 1 1 1 Putative lysophospholipase HEAT_2 PF13646.1 gi|336255055|ref|YP_004598162.1| - 0.00039 20.6 1.8 0.0017 18.6 0.9 2.3 2 1 0 2 2 2 1 HEAT repeats HEAT_EZ PF13513.1 gi|336255055|ref|YP_004598162.1| - 0.042 14.3 0.1 0.042 14.3 0.1 2.2 2 1 0 2 2 2 0 HEAT-like repeat HEAT PF02985.17 gi|336255055|ref|YP_004598162.1| - 0.087 12.9 0.0 0.28 11.3 0.0 1.9 1 0 0 1 1 1 0 HEAT repeat Rpp20 PF12328.3 gi|336255055|ref|YP_004598162.1| - 0.088 12.4 1.8 0.15 11.6 1.3 1.3 1 0 0 1 1 1 0 Rpp20 subunit of nuclear RNase MRP and P ArgK PF03308.11 gi|336255056|ref|YP_004598163.1| - 1.7e-93 312.2 4.3 2.1e-93 311.9 3.0 1.1 1 0 0 1 1 1 1 ArgK protein cobW PF02492.14 gi|336255056|ref|YP_004598163.1| - 1.8e-08 34.0 1.5 1.4e-07 31.1 1.0 2.1 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_17 PF13207.1 gi|336255056|ref|YP_004598163.1| - 1.1e-06 29.4 0.6 2.2e-05 25.2 0.0 2.6 2 1 0 2 2 2 1 AAA domain SRP54 PF00448.17 gi|336255056|ref|YP_004598163.1| - 1.3e-05 24.7 0.3 3.4e-05 23.3 0.2 1.7 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_10 PF12846.2 gi|336255056|ref|YP_004598163.1| - 4.7e-05 22.9 0.2 7.3e-05 22.3 0.1 1.5 1 1 0 1 1 1 1 AAA-like domain ATP_bind_1 PF03029.12 gi|336255056|ref|YP_004598163.1| - 7.3e-05 22.4 0.0 0.00019 21.0 0.0 1.7 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein NTPase_1 PF03266.10 gi|336255056|ref|YP_004598163.1| - 0.00017 21.3 0.1 0.00046 19.9 0.1 1.7 1 0 0 1 1 1 1 NTPase GTP_EFTU PF00009.22 gi|336255056|ref|YP_004598163.1| - 0.00021 20.7 0.0 0.39 10.1 0.0 2.3 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain AAA_19 PF13245.1 gi|336255056|ref|YP_004598163.1| - 0.00022 20.8 6.4 0.00062 19.4 0.1 3.5 4 1 0 4 4 4 1 Part of AAA domain AAA_30 PF13604.1 gi|336255056|ref|YP_004598163.1| - 0.00028 20.5 0.0 0.00076 19.1 0.0 1.7 1 0 0 1 1 1 1 AAA domain ABC_tran PF00005.22 gi|336255056|ref|YP_004598163.1| - 0.00036 20.8 0.1 0.00069 19.9 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_16 PF13191.1 gi|336255056|ref|YP_004598163.1| - 0.00045 20.2 0.0 0.00045 20.2 0.0 2.2 3 0 0 3 3 2 1 AAA ATPase domain AAA_18 PF13238.1 gi|336255056|ref|YP_004598163.1| - 0.001 19.3 0.2 0.0033 17.7 0.1 1.9 2 0 0 2 2 1 1 AAA domain AAA_22 PF13401.1 gi|336255056|ref|YP_004598163.1| - 0.0025 17.9 0.0 0.0091 16.1 0.0 2.0 2 0 0 2 2 1 1 AAA domain TrwB_AAD_bind PF10412.4 gi|336255056|ref|YP_004598163.1| - 0.003 16.2 0.0 0.0065 15.1 0.0 1.5 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain AAA_29 PF13555.1 gi|336255056|ref|YP_004598163.1| - 0.0043 16.5 0.1 0.0093 15.4 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain CbiA PF01656.18 gi|336255056|ref|YP_004598163.1| - 0.0046 16.3 1.2 0.0064 15.9 0.3 1.6 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_28 PF13521.1 gi|336255056|ref|YP_004598163.1| - 0.0048 16.8 1.3 0.0077 16.1 0.1 1.9 2 0 0 2 2 2 1 AAA domain Zeta_toxin PF06414.7 gi|336255056|ref|YP_004598163.1| - 0.0064 15.6 0.0 0.017 14.2 0.0 1.7 1 0 0 1 1 1 1 Zeta toxin AAA_33 PF13671.1 gi|336255056|ref|YP_004598163.1| - 0.0078 16.0 0.1 0.14 12.0 0.0 2.2 2 0 0 2 2 2 1 AAA domain KAP_NTPase PF07693.9 gi|336255056|ref|YP_004598163.1| - 0.017 14.1 0.0 0.023 13.7 0.0 1.2 1 0 0 1 1 1 0 KAP family P-loop domain MMR_HSR1 PF01926.18 gi|336255056|ref|YP_004598163.1| - 0.017 15.0 0.1 0.043 13.7 0.1 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase DUF258 PF03193.11 gi|336255056|ref|YP_004598163.1| - 0.02 14.0 0.0 0.035 13.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 KTI12 PF08433.5 gi|336255056|ref|YP_004598163.1| - 0.024 13.8 0.0 0.042 13.0 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 MobB PF03205.9 gi|336255056|ref|YP_004598163.1| - 0.032 13.9 1.0 0.064 12.9 0.0 1.9 2 1 0 2 2 1 0 Molybdopterin guanine dinucleotide synthesis protein B NB-ARC PF00931.17 gi|336255056|ref|YP_004598163.1| - 0.034 13.0 0.0 0.052 12.3 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain PRK PF00485.13 gi|336255056|ref|YP_004598163.1| - 0.04 13.4 0.1 0.083 12.4 0.1 1.5 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_25 PF13481.1 gi|336255056|ref|YP_004598163.1| - 0.065 12.6 0.8 0.19 11.0 0.1 2.2 2 1 1 3 3 3 0 AAA domain NACHT PF05729.7 gi|336255056|ref|YP_004598163.1| - 0.075 12.6 0.0 0.16 11.6 0.0 1.5 1 0 0 1 1 1 0 NACHT domain Miro PF08477.8 gi|336255056|ref|YP_004598163.1| - 0.1 13.0 0.0 0.2 12.1 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein AAA_14 PF13173.1 gi|336255056|ref|YP_004598163.1| - 0.17 11.8 0.0 0.29 11.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain DUF815 PF05673.8 gi|336255056|ref|YP_004598163.1| - 0.17 10.7 0.0 0.28 10.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF815) Rnk_N PF14760.1 gi|336255056|ref|YP_004598163.1| - 2.3 8.3 6.8 24 5.0 0.8 3.2 2 1 0 2 2 2 0 Rnk N-terminus B12-binding PF02310.14 gi|336255057|ref|YP_004598164.1| - 1.1e-21 76.9 1.0 1.3e-21 76.7 0.7 1.0 1 0 0 1 1 1 1 B12 binding domain BcrAD_BadFG PF01869.15 gi|336255057|ref|YP_004598164.1| - 0.029 13.6 0.0 0.057 12.7 0.0 1.4 1 1 0 1 1 1 0 BadF/BadG/BcrA/BcrD ATPase family Peripla_BP_6 PF13458.1 gi|336255057|ref|YP_004598164.1| - 0.038 13.3 0.0 0.16 11.3 0.0 1.6 1 1 1 2 2 2 0 Periplasmic binding protein Staph_haemo PF05480.6 gi|336255057|ref|YP_004598164.1| - 0.06 13.0 0.1 0.79 9.4 0.0 2.3 2 0 0 2 2 2 0 Staphylococcus haemolytic protein HD PF01966.17 gi|336255058|ref|YP_004598165.1| - 5.5e-16 58.6 1.1 9.5e-16 57.9 0.8 1.4 1 0 0 1 1 1 1 HD domain HD_4 PF13328.1 gi|336255058|ref|YP_004598165.1| - 0.00058 19.6 0.1 0.00094 18.9 0.1 1.4 1 0 0 1 1 1 1 HD domain XylR_N PF06505.6 gi|336255058|ref|YP_004598165.1| - 0.1 12.0 0.0 0.45 9.9 0.0 1.9 2 0 0 2 2 2 0 Activator of aromatic catabolism LysE PF01810.13 gi|336255059|ref|YP_004598166.1| - 2.1e-28 98.9 11.3 5e-27 94.4 7.8 2.0 1 1 0 1 1 1 1 LysE type translocator CAAD PF14159.1 gi|336255059|ref|YP_004598166.1| - 0.1 12.2 2.0 0.15 11.7 0.4 2.0 2 0 0 2 2 2 0 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase MFS_1 PF07690.11 gi|336255060|ref|YP_004598167.1| - 1.3e-27 96.4 67.1 3.3e-16 58.9 28.4 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|336255060|ref|YP_004598167.1| - 0.017 13.7 45.8 0.0049 15.5 10.2 3.4 1 1 3 4 4 4 0 Sugar (and other) transporter Methyltransf_18 PF12847.2 gi|336255061|ref|YP_004598168.1| - 1.6e-16 60.8 0.1 2.3e-16 60.3 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|336255061|ref|YP_004598168.1| - 4.7e-12 46.2 0.1 7.5e-12 45.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|336255061|ref|YP_004598168.1| - 2.6e-11 43.4 0.0 3.4e-11 43.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.9 gi|336255061|ref|YP_004598168.1| - 5.4e-11 42.0 0.0 6.1e-11 41.8 0.0 1.3 1 1 0 1 1 1 1 Tellurite resistance protein TehB Ubie_methyltran PF01209.13 gi|336255061|ref|YP_004598168.1| - 5.7e-11 41.9 0.0 7.5e-11 41.5 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|336255061|ref|YP_004598168.1| - 8.1e-11 41.9 0.4 5e-10 39.4 0.3 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|336255061|ref|YP_004598168.1| - 3.4e-10 40.1 0.0 5.2e-10 39.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|336255061|ref|YP_004598168.1| - 3.8e-10 39.5 0.0 4.5e-10 39.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|336255061|ref|YP_004598168.1| - 3.3e-09 37.1 0.1 5.3e-09 36.4 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|336255061|ref|YP_004598168.1| - 2.2e-07 30.4 0.0 4.8e-07 29.3 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase small domain Methyltransf_15 PF09445.5 gi|336255061|ref|YP_004598168.1| - 2.6e-05 23.8 0.0 2.6e-05 23.8 0.0 1.1 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase TPMT PF05724.6 gi|336255061|ref|YP_004598168.1| - 0.00056 19.4 0.0 0.00073 19.0 0.0 1.2 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) CMAS PF02353.15 gi|336255061|ref|YP_004598168.1| - 0.0012 17.9 0.0 0.0017 17.4 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase NodS PF05401.6 gi|336255061|ref|YP_004598168.1| - 0.0014 18.1 0.0 0.0018 17.6 0.0 1.3 1 0 0 1 1 1 1 Nodulation protein S (NodS) UPF0020 PF01170.13 gi|336255061|ref|YP_004598168.1| - 0.0044 16.6 0.0 0.0064 16.0 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 3HCDH_N PF02737.13 gi|336255061|ref|YP_004598168.1| - 0.023 14.3 0.0 0.04 13.5 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Methyltransf_24 PF13578.1 gi|336255061|ref|YP_004598168.1| - 0.024 15.4 0.2 0.048 14.4 0.1 1.5 1 0 0 1 1 1 0 Methyltransferase domain DUF938 PF06080.7 gi|336255061|ref|YP_004598168.1| - 0.04 13.4 0.0 0.063 12.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF938) PCMT PF01135.14 gi|336255061|ref|YP_004598168.1| - 0.071 12.6 0.0 0.098 12.1 0.0 1.1 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Thioredoxin_8 PF13905.1 gi|336255062|ref|YP_004598169.1| - 8.6e-07 28.9 0.0 1.2e-06 28.5 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin-like AhpC-TSA PF00578.16 gi|336255062|ref|YP_004598169.1| - 9.2e-06 25.3 0.0 1.2e-05 24.9 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Thioredoxin_2 PF13098.1 gi|336255062|ref|YP_004598169.1| - 2.6e-05 24.3 0.0 3.4e-05 23.9 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin-like domain Redoxin PF08534.5 gi|336255062|ref|YP_004598169.1| - 6.5e-05 22.5 0.0 8.3e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 Redoxin Thioredoxin PF00085.15 gi|336255062|ref|YP_004598169.1| - 0.00062 19.4 0.0 0.007 16.0 0.0 2.0 2 0 0 2 2 2 1 Thioredoxin Topoisom_bac PF01131.15 gi|336255063|ref|YP_004598170.1| - 3.5e-115 385.0 0.0 4.8e-115 384.6 0.0 1.2 1 0 0 1 1 1 1 DNA topoisomerase zf-C4_Topoisom PF01396.14 gi|336255063|ref|YP_004598170.1| - 2.6e-19 68.4 13.8 4.9e-13 48.3 0.7 3.6 4 0 0 4 4 4 2 Topoisomerase DNA binding C4 zinc finger Toprim PF01751.17 gi|336255063|ref|YP_004598170.1| - 2.5e-16 59.4 0.0 4.8e-16 58.5 0.0 1.5 1 0 0 1 1 1 1 Toprim domain HHH_5 PF14520.1 gi|336255063|ref|YP_004598170.1| - 6.5e-08 32.6 5.5 6.6e-08 32.6 1.2 2.9 3 0 0 3 3 3 1 Helix-hairpin-helix domain Cdd1 PF11731.3 gi|336255063|ref|YP_004598170.1| - 0.0026 17.6 0.0 0.0071 16.2 0.0 1.7 1 0 0 1 1 1 1 Pathogenicity locus DNA_pol_lambd_f PF10391.4 gi|336255063|ref|YP_004598170.1| - 0.098 12.2 0.0 0.28 10.7 0.0 1.8 1 0 0 1 1 1 0 Fingers domain of DNA polymerase lambda DUF4332 PF14229.1 gi|336255063|ref|YP_004598170.1| - 0.13 12.2 0.0 0.29 11.1 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4332) OrfB_Zn_ribbon PF07282.6 gi|336255063|ref|YP_004598170.1| - 0.17 11.5 0.9 3.1 7.5 0.2 2.6 2 0 0 2 2 2 0 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.7 gi|336255063|ref|YP_004598170.1| - 1.6 8.0 8.4 0.83 9.0 0.1 3.7 3 0 0 3 3 3 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.1 gi|336255063|ref|YP_004598170.1| - 9 5.9 8.3 17 5.0 0.0 3.0 3 0 0 3 3 3 0 zinc-ribbon domain Glyco_hydro_97 PF10566.4 gi|336255065|ref|YP_004598172.1| - 1.3e-78 263.8 0.0 2e-78 263.2 0.0 1.2 1 0 0 1 1 1 1 Glycoside hydrolase 97 GH97_N PF14508.1 gi|336255065|ref|YP_004598172.1| - 2.2e-67 226.7 0.0 5.7e-67 225.4 0.0 1.7 2 0 0 2 2 2 1 Glycosyl-hydrolase 97 N-terminal DUF2223 PF09985.4 gi|336255065|ref|YP_004598172.1| - 3e-40 137.9 0.0 6.1e-40 136.9 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF2223) GH97_C PF14509.1 gi|336255065|ref|YP_004598172.1| - 9.5e-25 86.6 0.0 1e-23 83.4 0.0 2.5 1 1 0 1 1 1 1 Glycosyl-hydrolase 97 C-terminal, oligomerisation CBM_6 PF03422.10 gi|336255065|ref|YP_004598172.1| - 0.014 15.5 0.9 0.014 15.5 0.6 2.6 3 0 0 3 3 3 0 Carbohydrate binding module (family 6) Polysacc_synt PF01943.12 gi|336255066|ref|YP_004598173.1| - 5.2e-28 98.0 24.2 5.2e-28 98.0 16.7 2.2 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.1 gi|336255066|ref|YP_004598173.1| - 2.6e-14 53.3 27.6 2.6e-14 53.3 19.2 3.0 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|336255066|ref|YP_004598173.1| - 6.1e-11 42.3 12.9 6.1e-11 42.3 8.9 4.6 2 2 2 5 5 5 2 Polysaccharide biosynthesis C-terminal domain DUF3426 PF11906.3 gi|336255067|ref|YP_004598174.1| - 0.00013 21.6 0.0 0.00017 21.2 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3426) DUF2393 PF09624.5 gi|336255067|ref|YP_004598174.1| - 0.007 15.9 0.0 0.0088 15.5 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2393) DUF2103 PF09876.4 gi|336255068|ref|YP_004598175.1| - 3.6e-43 145.5 0.3 6.1e-43 144.7 0.2 1.4 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2103) HlyD_2 PF12700.2 gi|336255068|ref|YP_004598175.1| - 0.16 11.1 0.0 0.21 10.7 0.0 1.1 1 0 0 1 1 1 0 HlyD family secretion protein Ribosomal_L37ae PF01780.14 gi|336255070|ref|YP_004598177.1| - 1.2e-24 85.9 0.1 1.3e-24 85.8 0.1 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family DNA_RNApol_7kD PF03604.8 gi|336255071|ref|YP_004598178.1| - 3.1e-10 39.3 6.2 3.7e-10 39.0 4.3 1.1 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit HypA PF01155.14 gi|336255071|ref|YP_004598178.1| - 0.00053 19.6 0.5 0.00055 19.6 0.4 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family zf-ribbon_3 PF13248.1 gi|336255071|ref|YP_004598178.1| - 0.0006 18.9 0.2 0.024 13.8 0.0 2.0 2 0 0 2 2 2 1 zinc-ribbon domain DUF329 PF03884.9 gi|336255071|ref|YP_004598178.1| - 0.0011 18.5 0.6 0.46 10.0 0.0 2.1 1 1 1 2 2 2 2 Domain of unknown function (DUF329) Zn_Tnp_IS1595 PF12760.2 gi|336255071|ref|YP_004598178.1| - 0.0033 17.1 4.6 0.095 12.5 0.1 2.1 2 0 0 2 2 2 1 Transposase zinc-ribbon domain Cys_rich_CPXG PF14255.1 gi|336255071|ref|YP_004598178.1| - 0.0075 16.0 0.2 0.029 14.1 0.0 2.0 2 0 0 2 2 2 1 Cysteine-rich CPXCG A2L_zn_ribbon PF08792.5 gi|336255071|ref|YP_004598178.1| - 0.0078 15.6 1.7 0.35 10.3 0.0 2.1 1 1 1 2 2 2 1 A2L zinc ribbon domain zf-CHCC PF10276.4 gi|336255071|ref|YP_004598178.1| - 0.008 15.9 0.2 0.013 15.2 0.1 1.4 1 0 0 1 1 1 1 Zinc-finger domain zinc_ribbon_2 PF13240.1 gi|336255071|ref|YP_004598178.1| - 0.012 15.0 3.9 0.093 12.2 2.7 2.0 1 1 0 1 1 1 0 zinc-ribbon domain DZR PF12773.2 gi|336255071|ref|YP_004598178.1| - 0.012 15.3 0.9 0.032 14.0 0.7 1.7 1 1 0 1 1 1 0 Double zinc ribbon Sgf11 PF08209.6 gi|336255071|ref|YP_004598178.1| - 0.02 14.2 3.0 0.52 9.6 0.2 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) DUF951 PF06107.6 gi|336255071|ref|YP_004598178.1| - 0.027 13.9 2.0 1.1 8.7 0.1 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF951) zf-ISL3 PF14690.1 gi|336255071|ref|YP_004598178.1| - 0.03 14.3 1.6 0.15 12.1 0.1 2.0 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Prok-RING_1 PF14446.1 gi|336255071|ref|YP_004598178.1| - 0.031 13.9 1.4 0.12 12.1 1.1 1.7 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 zf-Di19 PF05605.7 gi|336255071|ref|YP_004598178.1| - 0.039 14.0 0.2 0.61 10.2 0.0 2.0 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding CpXC PF14353.1 gi|336255071|ref|YP_004598178.1| - 0.044 13.7 1.6 1.3 8.9 0.1 2.0 1 1 1 2 2 2 0 CpXC protein zf-HIT PF04438.11 gi|336255071|ref|YP_004598178.1| - 0.048 13.2 3.8 0.81 9.3 0.5 2.0 2 0 0 2 2 2 0 HIT zinc finger OrfB_Zn_ribbon PF07282.6 gi|336255071|ref|YP_004598178.1| - 0.064 12.9 3.0 0.09 12.4 1.9 1.5 1 1 0 1 1 1 0 Putative transposase DNA-binding domain RNHCP PF12647.2 gi|336255071|ref|YP_004598178.1| - 0.075 12.8 0.6 0.11 12.3 0.4 1.3 1 1 0 1 1 1 0 RNHCP domain TF_Zn_Ribbon PF08271.7 gi|336255071|ref|YP_004598178.1| - 0.082 12.2 3.6 0.16 11.3 2.5 1.6 1 1 0 1 1 1 0 TFIIB zinc-binding TFIIS_C PF01096.13 gi|336255071|ref|YP_004598178.1| - 0.084 12.5 1.7 4.7 6.9 0.0 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zinc-ribbons_6 PF07191.7 gi|336255071|ref|YP_004598178.1| - 0.091 12.5 0.6 0.15 11.8 0.4 1.4 1 1 0 1 1 1 0 zinc-ribbons zf-C4_Topoisom PF01396.14 gi|336255071|ref|YP_004598178.1| - 0.093 12.2 1.5 0.49 9.9 0.1 2.0 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Spt4 PF06093.8 gi|336255071|ref|YP_004598178.1| - 0.096 12.5 0.2 0.1 12.5 0.2 1.0 1 0 0 1 1 1 0 Spt4/RpoE2 zinc finger Lar_restr_allev PF14354.1 gi|336255071|ref|YP_004598178.1| - 0.1 12.9 0.7 0.28 11.5 0.0 1.8 1 1 0 1 1 1 0 Restriction alleviation protein Lar zf-AN1 PF01428.11 gi|336255071|ref|YP_004598178.1| - 0.1 12.4 1.4 0.29 11.0 1.1 1.7 1 1 1 2 2 2 0 AN1-like Zinc finger zf-C2H2_4 PF13894.1 gi|336255071|ref|YP_004598178.1| - 0.11 12.8 1.6 2.2 8.8 0.0 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger Zn_ribbon_recom PF13408.1 gi|336255071|ref|YP_004598178.1| - 0.12 12.6 2.0 1.2 9.4 0.1 2.1 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain C1_1 PF00130.17 gi|336255071|ref|YP_004598178.1| - 0.12 12.0 0.6 0.16 11.7 0.4 1.3 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) TerY-C PF15616.1 gi|336255071|ref|YP_004598178.1| - 0.13 12.1 0.3 0.15 11.9 0.2 1.3 1 1 0 1 1 1 0 TerY-C metal binding domain zf-RING_3 PF14369.1 gi|336255071|ref|YP_004598178.1| - 0.19 11.7 2.1 0.32 11.0 1.5 1.4 1 0 0 1 1 1 0 zinc-finger DUF3268 PF11672.3 gi|336255071|ref|YP_004598178.1| - 0.21 11.6 1.0 2.7 8.1 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3268) zinc_ribbon_4 PF13717.1 gi|336255071|ref|YP_004598178.1| - 0.23 11.2 6.2 13 5.6 4.3 2.3 1 1 0 1 1 1 0 zinc-ribbon domain zf-TFIIB PF13453.1 gi|336255071|ref|YP_004598178.1| - 0.25 10.5 1.9 0.63 9.2 1.2 1.7 1 1 1 2 2 2 0 Transcription factor zinc-finger zinc_ribbon_5 PF13719.1 gi|336255071|ref|YP_004598178.1| - 0.27 10.8 6.4 17 5.1 4.5 2.3 1 1 0 1 1 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|336255071|ref|YP_004598178.1| - 0.67 9.9 5.2 5.3 7.0 3.6 2.0 1 1 0 1 1 1 0 Zinc ribbon domain zf-NADH-PPase PF09297.6 gi|336255071|ref|YP_004598178.1| - 0.72 9.4 0.1 0.72 9.4 0.0 2.1 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Mu-like_Com PF10122.4 gi|336255071|ref|YP_004598178.1| - 1.4 8.0 6.5 2.7 7.1 0.7 2.1 1 1 1 2 2 2 0 Mu-like prophage protein Com zf-C2H2 PF00096.21 gi|336255071|ref|YP_004598178.1| - 1.5 9.3 4.1 8.8 6.8 0.1 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type UPF0547 PF10571.4 gi|336255071|ref|YP_004598178.1| - 3.7 7.3 6.7 0.62 9.8 1.3 1.9 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Pcc1 PF09341.5 gi|336255072|ref|YP_004598179.1| - 4.6e-16 58.6 0.8 5.1e-16 58.4 0.5 1.0 1 0 0 1 1 1 1 Transcription factor Pcc1 Beta-lactamase PF00144.19 gi|336255073|ref|YP_004598180.1| - 2e-68 230.8 0.5 2.6e-68 230.4 0.3 1.1 1 0 0 1 1 1 1 Beta-lactamase Pab87_oct PF13969.1 gi|336255073|ref|YP_004598180.1| - 0.0024 17.9 0.0 0.01 15.9 0.0 2.0 2 0 0 2 2 2 1 Pab87 octamerisation domain DUF2613 PF11021.3 gi|336255075|ref|YP_004598182.1| - 0.036 13.7 0.1 0.039 13.6 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2613) DUF2797 PF10977.3 gi|336255077|ref|YP_004598184.1| - 1e-48 166.0 6.9 1.8e-47 161.9 4.8 2.0 1 1 0 1 1 1 1 Protein of unknown function (DUF2797) SoxG PF04268.7 gi|336255077|ref|YP_004598184.1| - 0.04 13.7 0.0 0.16 11.8 0.0 1.8 2 0 0 2 2 2 0 Sarcosine oxidase, gamma subunit family BsuPI PF12690.2 gi|336255078|ref|YP_004598185.1| - 8.9e-22 76.6 0.0 1.1e-21 76.3 0.0 1.1 1 0 0 1 1 1 1 Intracellular proteinase inhibitor DUF1573 PF07610.6 gi|336255078|ref|YP_004598185.1| - 0.05 13.1 0.0 0.2 11.2 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1573) CARDB PF07705.6 gi|336255078|ref|YP_004598185.1| - 0.1 12.6 0.0 0.19 11.7 0.0 1.5 1 1 0 1 1 1 0 CARDB DUF350 PF03994.9 gi|336255079|ref|YP_004598186.1| - 0.029 14.1 0.3 0.029 14.1 0.2 2.8 4 0 0 4 4 4 0 Domain of Unknown Function (DUF350) CbiX PF01903.12 gi|336255081|ref|YP_004598188.1| - 2.7e-43 146.3 0.9 7.7e-22 77.4 0.1 2.2 2 0 0 2 2 2 2 CbiX CbiK PF06180.6 gi|336255081|ref|YP_004598188.1| - 2.5e-08 33.3 0.1 0.00016 20.9 0.1 2.1 1 1 0 2 2 2 2 Cobalt chelatase (CbiK) DUF3040 PF11239.3 gi|336255083|ref|YP_004598190.1| - 0.63 10.1 6.2 1.1 9.2 4.3 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) Trm112p PF03966.11 gi|336255084|ref|YP_004598191.1| - 1.7e-09 37.8 0.9 3.9e-09 36.7 0.7 1.6 1 1 0 1 1 1 1 Trm112p-like protein DUF1451 PF07295.6 gi|336255084|ref|YP_004598191.1| - 0.043 13.5 0.0 0.048 13.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) TF_Zn_Ribbon PF08271.7 gi|336255084|ref|YP_004598191.1| - 0.069 12.4 1.2 0.16 11.3 0.2 1.9 2 0 0 2 2 2 0 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|336255084|ref|YP_004598191.1| - 0.12 11.5 0.1 0.26 10.5 0.1 1.5 1 0 0 1 1 1 0 zinc-ribbon domain Adenylsucc_synt PF00709.16 gi|336255085|ref|YP_004598192.1| - 5.4e-144 479.9 0.0 6.4e-144 479.7 0.0 1.0 1 0 0 1 1 1 1 Adenylosuccinate synthetase HTH_24 PF13412.1 gi|336255086|ref|YP_004598193.1| - 0.00041 19.6 0.0 0.00086 18.6 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_12 PF08461.5 gi|336255086|ref|YP_004598193.1| - 0.0048 16.6 0.1 0.0091 15.7 0.0 1.6 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain TrmB PF01978.14 gi|336255086|ref|YP_004598193.1| - 0.009 15.6 0.4 0.016 14.8 0.1 1.6 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Phage_rep_org_N PF09681.5 gi|336255086|ref|YP_004598193.1| - 0.037 13.5 0.0 0.074 12.6 0.0 1.5 1 1 1 2 2 2 0 N-terminal phage replisome organiser (Phage_rep_org_N) DUF2250 PF10007.4 gi|336255086|ref|YP_004598193.1| - 0.042 13.7 0.1 0.059 13.2 0.1 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_5 PF01022.15 gi|336255086|ref|YP_004598193.1| - 0.065 12.9 0.1 0.15 11.7 0.1 1.6 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|336255086|ref|YP_004598193.1| - 0.07 12.9 0.2 0.23 11.2 0.0 2.0 1 1 1 2 2 2 0 Helix-turn-helix domain MotA_activ PF09114.5 gi|336255086|ref|YP_004598193.1| - 0.1 12.3 0.0 0.12 12.1 0.0 1.2 1 0 0 1 1 1 0 Transcription factor MotA, activation domain DUF977 PF06163.6 gi|336255086|ref|YP_004598193.1| - 0.11 12.2 0.0 0.12 12.0 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) IncA PF04156.9 gi|336255087|ref|YP_004598194.1| - 3.2e-06 26.8 5.2 5.5e-06 26.1 3.6 1.4 1 0 0 1 1 1 1 IncA protein FlxA PF14282.1 gi|336255087|ref|YP_004598194.1| - 8.9e-05 22.3 2.4 8.9e-05 22.3 1.7 2.6 2 1 0 2 2 2 1 FlxA-like protein DUF3552 PF12072.3 gi|336255087|ref|YP_004598194.1| - 0.00031 20.0 7.4 0.00059 19.1 5.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF3552) Tektin PF03148.9 gi|336255087|ref|YP_004598194.1| - 0.00093 17.8 3.2 0.00093 17.8 2.2 1.9 2 0 0 2 2 2 1 Tektin family DUF972 PF06156.8 gi|336255087|ref|YP_004598194.1| - 0.0013 19.0 1.7 0.0091 16.3 1.2 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF972) CENP-Q PF13094.1 gi|336255087|ref|YP_004598194.1| - 0.0016 18.5 2.5 0.0034 17.4 1.8 1.5 1 0 0 1 1 1 1 CENP-Q, a CENPA-CAD centromere complex subunit CENP-F_leu_zip PF10473.4 gi|336255087|ref|YP_004598194.1| - 0.0018 18.1 11.3 0.0034 17.2 7.8 1.4 1 0 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 TBPIP PF07106.8 gi|336255087|ref|YP_004598194.1| - 0.0018 17.8 4.0 0.0033 16.9 2.8 1.3 1 0 0 1 1 1 1 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) TMF_DNA_bd PF12329.3 gi|336255087|ref|YP_004598194.1| - 0.0022 17.7 14.1 0.0047 16.7 9.8 1.5 1 0 0 1 1 1 1 TATA element modulatory factor 1 DNA binding DUF2353 PF09789.4 gi|336255087|ref|YP_004598194.1| - 0.0032 16.7 1.9 0.0051 16.1 1.3 1.2 1 0 0 1 1 1 1 Uncharacterized coiled-coil protein (DUF2353) DUF3450 PF11932.3 gi|336255087|ref|YP_004598194.1| - 0.0034 16.6 3.4 0.0066 15.7 2.4 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3450) TMF_TATA_bd PF12325.3 gi|336255087|ref|YP_004598194.1| - 0.0051 16.5 8.8 0.011 15.5 6.1 1.4 1 0 0 1 1 1 1 TATA element modulatory factor 1 TATA binding BLOC1_2 PF10046.4 gi|336255087|ref|YP_004598194.1| - 0.0051 16.9 6.0 0.011 15.8 4.1 1.5 1 0 0 1 1 1 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF2968 PF11180.3 gi|336255087|ref|YP_004598194.1| - 0.0059 16.0 9.4 0.012 14.9 6.5 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF2968) V_ATPase_I PF01496.14 gi|336255087|ref|YP_004598194.1| - 0.0067 14.3 0.2 0.01 13.7 0.2 1.1 1 0 0 1 1 1 1 V-type ATPase 116kDa subunit family AAA_23 PF13476.1 gi|336255087|ref|YP_004598194.1| - 0.0078 16.5 2.0 0.012 15.9 1.4 1.3 1 0 0 1 1 1 1 AAA domain Fmp27_WPPW PF10359.4 gi|336255087|ref|YP_004598194.1| - 0.0093 14.4 3.3 0.015 13.7 2.3 1.2 1 0 0 1 1 1 1 RNA pol II promoter Fmp27 protein domain Tropomyosin_1 PF12718.2 gi|336255087|ref|YP_004598194.1| - 0.011 15.6 10.4 0.029 14.2 7.2 1.7 1 0 0 1 1 1 0 Tropomyosin like Rootletin PF15035.1 gi|336255087|ref|YP_004598194.1| - 0.013 15.4 6.9 0.024 14.6 4.8 1.3 1 0 0 1 1 1 0 Ciliary rootlet component, centrosome cohesion DUF904 PF06005.7 gi|336255087|ref|YP_004598194.1| - 0.014 15.7 12.3 0.025 14.8 7.5 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF904) DUF1664 PF07889.7 gi|336255087|ref|YP_004598194.1| - 0.014 15.2 2.3 0.026 14.3 1.6 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) DUF342 PF03961.8 gi|336255087|ref|YP_004598194.1| - 0.014 13.8 0.2 0.02 13.2 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF342) bZIP_1 PF00170.16 gi|336255087|ref|YP_004598194.1| - 0.02 14.8 11.1 0.57 10.1 2.6 2.4 1 1 1 2 2 2 0 bZIP transcription factor Cep57_CLD_2 PF14197.1 gi|336255087|ref|YP_004598194.1| - 0.022 14.6 16.4 0.048 13.5 11.4 1.5 1 0 0 1 1 1 0 Centrosome localisation domain of PPC89 DUF812 PF05667.6 gi|336255087|ref|YP_004598194.1| - 0.025 13.1 10.0 0.035 12.6 6.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF812) Syntaxin_2 PF14523.1 gi|336255087|ref|YP_004598194.1| - 0.026 14.5 1.2 0.048 13.7 0.8 1.3 1 0 0 1 1 1 0 Syntaxin-like protein Syntaxin PF00804.20 gi|336255087|ref|YP_004598194.1| - 0.026 14.6 5.0 0.054 13.6 3.5 1.4 1 0 0 1 1 1 0 Syntaxin Mnd1 PF03962.10 gi|336255087|ref|YP_004598194.1| - 0.038 13.6 7.0 0.075 12.6 4.9 1.4 1 0 0 1 1 1 0 Mnd1 family Myosin_tail_1 PF01576.14 gi|336255087|ref|YP_004598194.1| - 0.054 11.2 11.3 0.082 10.6 7.8 1.1 1 0 0 1 1 1 0 Myosin tail Macoilin PF09726.4 gi|336255087|ref|YP_004598194.1| - 0.068 11.4 13.6 0.11 10.8 9.4 1.3 1 0 0 1 1 1 0 Transmembrane protein GAS PF13851.1 gi|336255087|ref|YP_004598194.1| - 0.072 12.2 6.5 0.15 11.2 4.5 1.4 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding Atg14 PF10186.4 gi|336255087|ref|YP_004598194.1| - 0.073 12.0 5.7 0.12 11.2 3.9 1.3 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 ADIP PF11559.3 gi|336255087|ref|YP_004598194.1| - 0.083 12.7 11.7 0.28 11.0 8.1 1.8 1 1 0 1 1 1 0 Afadin- and alpha -actinin-Binding EzrA PF06160.7 gi|336255087|ref|YP_004598194.1| - 0.1 10.7 2.9 0.14 10.2 2.0 1.1 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA Syntaxin-6_N PF09177.6 gi|336255087|ref|YP_004598194.1| - 0.13 12.6 4.3 2.9 8.3 2.8 2.4 2 0 0 2 2 2 0 Syntaxin 6, N-terminal DUF4094 PF13334.1 gi|336255087|ref|YP_004598194.1| - 0.16 12.3 3.7 0.38 11.1 2.5 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4094) Prefoldin_2 PF01920.15 gi|336255087|ref|YP_004598194.1| - 0.2 11.4 13.2 2 8.2 4.8 2.4 1 1 1 2 2 2 0 Prefoldin subunit MAD PF05557.8 gi|336255087|ref|YP_004598194.1| - 0.2 9.7 7.9 0.35 8.8 5.5 1.3 1 0 0 1 1 1 0 Mitotic checkpoint protein DUF3584 PF12128.3 gi|336255087|ref|YP_004598194.1| - 0.2 8.9 10.0 0.29 8.4 7.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Nup54 PF13874.1 gi|336255087|ref|YP_004598194.1| - 0.25 11.0 5.1 0.49 10.0 3.5 1.4 1 0 0 1 1 1 0 Nucleoporin complex subunit 54 DUF724 PF05266.9 gi|336255087|ref|YP_004598194.1| - 0.26 10.9 2.7 0.46 10.0 1.9 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF724) Nsp1_C PF05064.8 gi|336255087|ref|YP_004598194.1| - 0.26 10.9 3.9 0.57 9.8 2.7 1.5 1 0 0 1 1 1 0 Nsp1-like C-terminal region Laminin_II PF06009.7 gi|336255087|ref|YP_004598194.1| - 0.32 10.7 4.0 0.87 9.3 2.8 1.7 1 0 0 1 1 1 0 Laminin Domain II APG6 PF04111.7 gi|336255087|ref|YP_004598194.1| - 0.4 9.6 7.6 0.64 9.0 5.3 1.2 1 0 0 1 1 1 0 Autophagy protein Apg6 DUF4140 PF13600.1 gi|336255087|ref|YP_004598194.1| - 0.42 11.0 13.8 6.5 7.2 3.2 3.4 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) Not3 PF04065.10 gi|336255087|ref|YP_004598194.1| - 0.45 9.7 7.2 1.2 8.3 5.0 1.5 1 1 0 1 1 1 0 Not1 N-terminal domain, CCR4-Not complex component CENP-H PF05837.7 gi|336255087|ref|YP_004598194.1| - 0.59 10.3 9.1 1.3 9.1 6.3 1.5 1 0 0 1 1 1 0 Centromere protein H (CENP-H) DUF3287 PF11690.3 gi|336255087|ref|YP_004598194.1| - 0.71 9.9 3.2 1.3 9.1 2.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3287) FemAB PF02388.11 gi|336255087|ref|YP_004598194.1| - 0.79 8.3 3.0 1.1 7.8 2.1 1.1 1 0 0 1 1 1 0 FemAB family OmpH PF03938.9 gi|336255087|ref|YP_004598194.1| - 1.1 9.1 5.8 2.5 8.0 4.0 1.4 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) DivIC PF04977.10 gi|336255087|ref|YP_004598194.1| - 1.3 8.5 13.7 33 4.0 7.8 2.5 1 1 1 2 2 2 0 Septum formation initiator Herpes_UL25 PF01499.11 gi|336255087|ref|YP_004598194.1| - 1.3 7.1 3.7 2.5 6.3 2.5 1.3 1 0 0 1 1 1 0 Herpesvirus UL25 family FlgN PF05130.7 gi|336255087|ref|YP_004598194.1| - 1.5 9.0 10.1 2.9 8.1 7.0 1.4 1 0 0 1 1 1 0 FlgN protein PspA_IM30 PF04012.7 gi|336255087|ref|YP_004598194.1| - 1.8 7.8 13.4 0.63 9.3 5.7 2.5 2 1 0 2 2 2 0 PspA/IM30 family AAA_13 PF13166.1 gi|336255087|ref|YP_004598194.1| - 1.8 6.9 7.0 2.8 6.2 4.8 1.1 1 0 0 1 1 1 0 AAA domain Prefoldin PF02996.12 gi|336255087|ref|YP_004598194.1| - 2 8.0 8.2 1.9 8.1 2.8 2.2 1 1 1 2 2 2 0 Prefoldin subunit Shugoshin_N PF07558.6 gi|336255087|ref|YP_004598194.1| - 2.1 8.0 5.7 4.3 7.1 0.3 2.2 1 1 1 2 2 2 0 Shugoshin N-terminal coiled-coil region DUF4200 PF13863.1 gi|336255087|ref|YP_004598194.1| - 2.4 8.1 12.6 7.8 6.4 8.7 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4200) DUF4337 PF14235.1 gi|336255087|ref|YP_004598194.1| - 2.5 7.9 6.6 2.2 8.0 2.2 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4337) Spc7 PF08317.6 gi|336255087|ref|YP_004598194.1| - 3.8 6.0 7.5 5.9 5.4 5.2 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein bZIP_2 PF07716.10 gi|336255087|ref|YP_004598194.1| - 4.1 7.2 14.9 3.6 7.4 3.9 2.5 1 1 1 2 2 2 0 Basic region leucine zipper Ax_dynein_light PF10211.4 gi|336255087|ref|YP_004598194.1| - 4.1 7.1 10.7 20 4.9 7.4 1.9 1 1 0 1 1 1 0 Axonemal dynein light chain DUF2312 PF10073.4 gi|336255087|ref|YP_004598194.1| - 4.8 6.6 11.1 0.23 10.8 2.2 2.7 3 0 0 3 3 2 0 Uncharacterized protein conserved in bacteria (DUF2312) ATG16 PF08614.6 gi|336255087|ref|YP_004598194.1| - 9.4 6.0 17.1 35 4.1 11.8 2.0 1 1 0 1 1 1 0 Autophagy protein 16 (ATG16) UPF0058 PF01893.11 gi|336255088|ref|YP_004598195.1| - 7.5e-34 115.6 1.4 8.4e-34 115.4 1.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 Glu-tRNAGln PF02686.10 gi|336255088|ref|YP_004598195.1| - 0.05 13.4 0.1 0.069 12.9 0.1 1.3 1 0 0 1 1 1 0 Glu-tRNAGln amidotransferase C subunit Ada3 PF10198.4 gi|336255088|ref|YP_004598195.1| - 0.067 12.9 0.0 0.072 12.8 0.0 1.2 1 0 0 1 1 1 0 Histone acetyltransferases subunit 3 DUF998 PF06197.8 gi|336255089|ref|YP_004598196.1| - 2.5e-17 62.7 37.1 3.4e-17 62.3 25.1 1.5 1 1 1 2 2 2 2 Protein of unknown function (DUF998) Frag1 PF10277.4 gi|336255089|ref|YP_004598196.1| - 0.16 11.4 2.1 0.25 10.7 1.4 1.5 1 1 0 1 1 1 0 Frag1/DRAM/Sfk1 family ABC_tran PF00005.22 gi|336255090|ref|YP_004598197.1| - 6.3e-33 113.9 0.0 1.1e-32 113.2 0.0 1.4 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.5 gi|336255090|ref|YP_004598197.1| - 7.2e-09 35.5 2.2 1e-08 35.0 0.5 2.2 2 0 0 2 2 2 1 TOBE domain AAA_21 PF13304.1 gi|336255090|ref|YP_004598197.1| - 9.8e-06 25.7 0.0 0.022 14.7 0.0 2.2 1 1 1 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|336255090|ref|YP_004598197.1| - 0.0016 18.5 0.5 0.012 15.7 0.3 2.1 1 1 0 1 1 1 1 AAA domain Rad17 PF03215.10 gi|336255090|ref|YP_004598197.1| - 0.0031 16.2 0.0 0.0043 15.8 0.0 1.1 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA_33 PF13671.1 gi|336255090|ref|YP_004598197.1| - 0.0033 17.2 0.0 0.015 15.1 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|336255090|ref|YP_004598197.1| - 0.0059 16.6 0.8 0.02 14.8 0.5 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.24 gi|336255090|ref|YP_004598197.1| - 0.013 15.7 0.2 0.05 13.7 0.1 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SbcCD_C PF13558.1 gi|336255090|ref|YP_004598197.1| - 0.023 14.5 0.4 0.12 12.2 0.3 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_19 PF13245.1 gi|336255090|ref|YP_004598197.1| - 0.05 13.3 0.1 0.12 12.1 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain DUF258 PF03193.11 gi|336255090|ref|YP_004598197.1| - 0.061 12.5 0.0 0.11 11.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 NB-ARC PF00931.17 gi|336255090|ref|YP_004598197.1| - 0.078 11.8 0.0 0.12 11.1 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_28 PF13521.1 gi|336255090|ref|YP_004598197.1| - 0.1 12.5 0.1 0.55 10.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|336255090|ref|YP_004598197.1| - 0.13 12.1 0.0 0.26 11.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|336255090|ref|YP_004598197.1| - 0.21 12.4 1.5 0.66 10.8 0.9 2.3 1 1 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|336255092|ref|YP_004598199.1| - 1.9e-51 174.5 0.0 2.7e-51 174.0 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|336255092|ref|YP_004598199.1| - 0.0062 16.0 0.0 0.013 15.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain FtsK_SpoIIIE PF01580.13 gi|336255092|ref|YP_004598199.1| - 0.049 13.1 0.0 0.71 9.3 0.0 2.7 3 0 0 3 3 3 0 FtsK/SpoIIIE family T2SF PF00482.18 gi|336255093|ref|YP_004598200.1| - 3.6e-35 120.5 12.7 6.7e-21 74.4 1.1 3.3 3 0 0 3 3 3 2 Type II secretion system (T2SS), protein F Methyltransf_11 PF08241.7 gi|336255094|ref|YP_004598201.1| - 3.6e-18 65.8 0.1 5.7e-18 65.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|336255094|ref|YP_004598201.1| - 4.6e-13 49.0 0.0 6.4e-13 48.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|336255094|ref|YP_004598201.1| - 1.9e-12 47.4 0.1 4.3e-12 46.2 0.1 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|336255094|ref|YP_004598201.1| - 2.6e-11 44.1 0.1 5.3e-11 43.0 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|336255094|ref|YP_004598201.1| - 1.7e-09 38.0 0.0 3.1e-09 37.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|336255094|ref|YP_004598201.1| - 6e-06 25.5 0.0 7.8e-06 25.1 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.1 gi|336255094|ref|YP_004598201.1| - 1.1e-05 25.2 0.0 1.5e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.10 gi|336255094|ref|YP_004598201.1| - 0.0018 17.9 0.2 0.0061 16.2 0.1 1.7 1 1 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_26 PF13659.1 gi|336255094|ref|YP_004598201.1| - 0.029 14.3 0.7 0.066 13.2 0.5 1.6 1 0 0 1 1 1 0 Methyltransferase domain NodS PF05401.6 gi|336255094|ref|YP_004598201.1| - 0.034 13.5 0.0 0.046 13.1 0.0 1.1 1 0 0 1 1 1 0 Nodulation protein S (NodS) PSII_BNR PF14870.1 gi|336255095|ref|YP_004598202.1| - 0.00031 19.8 9.3 0.02 13.8 0.3 3.7 1 1 3 4 4 4 4 Photosynthesis system II assembly factor YCF48 TAT_signal PF10518.4 gi|336255095|ref|YP_004598202.1| - 0.083 12.9 7.4 0.3 11.1 5.1 2.1 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence HTH_20 PF12840.2 gi|336255096|ref|YP_004598203.1| - 0.034 13.9 0.0 0.25 11.1 0.0 2.1 1 1 0 1 1 1 0 Helix-turn-helix domain PAS_4 PF08448.5 gi|336255097|ref|YP_004598204.1| - 1e-38 131.7 9.9 1.3e-12 47.7 0.2 3.9 4 0 0 4 4 4 3 PAS fold HATPase_c PF02518.21 gi|336255097|ref|YP_004598204.1| - 4.9e-31 106.7 0.1 1.2e-29 102.2 0.0 2.6 3 0 0 3 3 3 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|336255097|ref|YP_004598204.1| - 5.5e-27 94.1 0.1 5.1e-11 42.8 0.0 3.7 3 0 0 3 3 3 3 PAS domain GAF_2 PF13185.1 gi|336255097|ref|YP_004598204.1| - 6.4e-13 49.4 0.8 6.4e-13 49.4 0.5 2.8 3 0 0 3 3 3 1 GAF domain GAF PF01590.21 gi|336255097|ref|YP_004598204.1| - 1.4e-11 44.7 1.9 1.6e-11 44.5 0.4 1.9 2 0 0 2 2 2 1 GAF domain GAF_3 PF13492.1 gi|336255097|ref|YP_004598204.1| - 1.9e-11 44.1 0.1 5.4e-11 42.7 0.1 1.8 1 0 0 1 1 1 1 GAF domain HisKA PF00512.20 gi|336255097|ref|YP_004598204.1| - 4.2e-09 36.2 3.0 1.1e-08 34.9 0.0 2.9 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS PF00989.19 gi|336255097|ref|YP_004598204.1| - 1.5e-05 24.7 0.1 0.15 11.8 0.0 4.0 3 1 1 4 4 4 2 PAS fold HATPase_c_5 PF14501.1 gi|336255097|ref|YP_004598204.1| - 1.7e-05 24.4 0.0 4.5e-05 23.0 0.0 1.7 1 0 0 1 1 1 1 GHKL domain HATPase_c_2 PF13581.1 gi|336255097|ref|YP_004598204.1| - 7.2e-05 22.5 0.2 0.00023 20.9 0.1 1.9 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_8 PF13188.1 gi|336255097|ref|YP_004598204.1| - 0.00025 20.7 0.1 0.46 10.4 0.0 4.0 3 0 0 3 3 3 1 PAS domain HATPase_c_3 PF13589.1 gi|336255097|ref|YP_004598204.1| - 0.0032 17.1 0.0 0.0083 15.7 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.6 gi|336255097|ref|YP_004598204.1| - 0.048 13.7 2.7 0.18 11.8 0.0 3.2 4 0 0 4 4 4 0 PAS fold ATP1G1_PLM_MAT8 PF02038.11 gi|336255099|ref|YP_004598206.1| - 4.4 6.3 5.7 1.1 8.3 1.6 1.8 2 0 0 2 2 2 0 ATP1G1/PLM/MAT8 family Acetyltransf_1 PF00583.19 gi|336255100|ref|YP_004598207.1| - 1.9e-08 34.1 0.0 3.3e-08 33.4 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|336255100|ref|YP_004598207.1| - 0.00019 21.4 0.0 0.00032 20.7 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|336255100|ref|YP_004598207.1| - 0.048 13.5 0.0 0.076 12.8 0.0 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|336255100|ref|YP_004598207.1| - 0.059 13.2 0.0 0.12 12.2 0.0 1.5 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase PQQ_2 PF13360.1 gi|336255102|ref|YP_004598209.1| - 4.4e-21 75.4 11.2 2.2e-11 43.6 2.9 2.9 1 1 1 2 2 2 2 PQQ-like domain PQQ PF01011.16 gi|336255102|ref|YP_004598209.1| - 2.3e-08 33.1 8.2 1.3 8.6 0.1 6.2 5 0 0 5 5 5 4 PQQ enzyme repeat PQQ_3 PF13570.1 gi|336255102|ref|YP_004598209.1| - 0.00016 21.8 23.5 0.13 12.6 0.3 7.4 7 1 0 7 7 7 3 PQQ-like domain XPG_I PF00867.13 gi|336255103|ref|YP_004598210.1| - 3.9e-23 81.3 0.0 6.8e-23 80.5 0.0 1.4 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.12 gi|336255103|ref|YP_004598210.1| - 1.1e-10 41.6 0.0 1.9e-10 40.9 0.0 1.4 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.15 gi|336255103|ref|YP_004598210.1| - 9.4e-05 22.5 0.0 0.00018 21.7 0.0 1.5 1 0 0 1 1 1 1 5'-3' exonuclease, C-terminal SAM fold Chorismate_synt PF01264.16 gi|336255103|ref|YP_004598210.1| - 0.096 11.1 0.7 0.21 10.0 0.5 1.5 1 1 0 1 1 1 0 Chorismate synthase ADH_zinc_N PF00107.21 gi|336255104|ref|YP_004598211.1| - 5.1e-26 90.7 0.1 1e-25 89.7 0.1 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|336255104|ref|YP_004598211.1| - 7.7e-15 55.9 0.6 2.1e-14 54.4 0.1 2.0 2 1 0 2 2 2 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|336255104|ref|YP_004598211.1| - 1.9e-11 43.6 0.0 6.8e-11 41.9 0.0 1.9 1 1 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain NAD_binding_10 PF13460.1 gi|336255104|ref|YP_004598211.1| - 0.032 14.2 0.4 0.12 12.3 0.0 2.0 2 0 0 2 2 2 0 NADH(P)-binding AlaDh_PNT_C PF01262.16 gi|336255104|ref|YP_004598211.1| - 0.039 13.5 0.1 0.086 12.3 0.0 1.6 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox PF00070.22 gi|336255105|ref|YP_004598212.1| - 2.9e-12 46.8 1.4 7.4e-09 35.8 0.1 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|336255105|ref|YP_004598212.1| - 6e-09 36.0 0.1 5.5e-05 23.1 0.0 2.3 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|336255105|ref|YP_004598212.1| - 0.00069 19.4 3.2 7.2 6.3 0.1 4.0 2 2 2 4 4 4 3 FAD-NAD(P)-binding Pyr_redox_3 PF13738.1 gi|336255105|ref|YP_004598212.1| - 0.001 19.1 0.8 0.091 12.8 0.1 2.8 1 1 1 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Saccharop_dh PF03435.13 gi|336255105|ref|YP_004598212.1| - 0.0022 17.0 0.2 0.0032 16.4 0.1 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase NAD_binding_8 PF13450.1 gi|336255105|ref|YP_004598212.1| - 0.0076 16.2 0.3 2.1 8.4 0.0 2.8 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain TrkA_N PF02254.13 gi|336255105|ref|YP_004598212.1| - 0.017 15.1 0.2 0.11 12.4 0.0 2.2 2 0 0 2 2 2 0 TrkA-N domain Semialdhyde_dh PF01118.19 gi|336255105|ref|YP_004598212.1| - 0.16 12.2 1.1 0.48 10.7 0.0 2.4 2 2 1 3 3 3 0 Semialdehyde dehydrogenase, NAD binding domain DUF3149 PF11346.3 gi|336255106|ref|YP_004598213.1| - 0.16 11.5 0.3 0.21 11.1 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3149) Complex1_49kDa PF00346.14 gi|336255107|ref|YP_004598214.1| - 9.4e-67 224.8 0.1 3.5e-44 150.8 0.1 2.1 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.14 gi|336255107|ref|YP_004598214.1| - 2.1e-29 101.8 0.0 3.7e-29 100.9 0.0 1.4 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Acyl-CoA_dh_N PF02771.11 gi|336255107|ref|YP_004598214.1| - 0.017 15.7 0.0 1.7 9.2 0.0 2.5 2 0 0 2 2 2 0 Acyl-CoA dehydrogenase, N-terminal domain PALP PF00291.20 gi|336255108|ref|YP_004598215.1| - 1.9e-43 148.8 0.3 2.3e-43 148.5 0.2 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme DUF3923 PF13061.1 gi|336255109|ref|YP_004598216.1| - 0.071 12.9 1.3 0.082 12.7 0.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3923) Cytochrom_B_N PF00033.14 gi|336255111|ref|YP_004598218.1| - 7.4e-24 84.1 16.8 3.4e-22 78.7 11.2 2.1 2 0 0 2 2 2 1 Cytochrome b(N-terminal)/b6/petB Ni_hydr_CYTB PF01292.15 gi|336255111|ref|YP_004598218.1| - 2.1e-19 69.6 14.4 2.1e-19 69.6 10.0 2.1 2 1 0 2 2 2 1 Prokaryotic cytochrome b561 PepSY_TM_2 PF13703.1 gi|336255111|ref|YP_004598218.1| - 0.011 15.8 1.6 0.011 15.8 1.1 3.7 4 1 0 4 4 4 0 PepSY-associated TM helix DUF4227 PF14004.1 gi|336255111|ref|YP_004598218.1| - 0.15 11.9 2.0 10 6.0 0.0 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF4227) 7tm_1 PF00001.16 gi|336255111|ref|YP_004598218.1| - 0.34 10.0 0.0 0.34 10.0 0.0 2.6 3 1 0 4 4 4 0 7 transmembrane receptor (rhodopsin family) SIT PF15330.1 gi|336255111|ref|YP_004598218.1| - 0.39 10.8 1.9 17 5.5 0.0 2.4 2 0 0 2 2 2 0 SHP2-interacting transmembrane adaptor protein, SIT DUF3592 PF12158.3 gi|336255111|ref|YP_004598218.1| - 8.7 6.1 0.0 8.7 6.1 0.0 3.6 3 1 0 3 3 3 0 Protein of unknown function (DUF3592) COX14 PF14880.1 gi|336255111|ref|YP_004598218.1| - 9 6.0 8.8 5.3 6.7 0.1 3.4 3 0 0 3 3 3 0 Cytochrome oxidase c assembly Fer4_11 PF13247.1 gi|336255113|ref|YP_004598220.1| - 1.2e-20 73.2 11.2 1.2e-20 73.2 7.8 1.9 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|336255113|ref|YP_004598220.1| - 1.2e-14 54.4 26.4 2.5e-07 30.9 6.8 2.5 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|336255113|ref|YP_004598220.1| - 3.4e-14 52.8 26.3 3.9e-08 33.4 6.1 2.9 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.22 gi|336255113|ref|YP_004598220.1| - 5.7e-11 41.5 31.9 7.1e-06 25.4 0.7 5.3 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_2 PF12797.2 gi|336255113|ref|YP_004598220.1| - 2.6e-09 36.4 34.1 0.00016 21.3 1.4 4.8 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_10 PF13237.1 gi|336255113|ref|YP_004598220.1| - 3.5e-08 33.1 29.6 0.00097 18.8 7.6 3.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|336255113|ref|YP_004598220.1| - 3.7e-08 33.2 21.9 2.2e-05 24.3 3.5 2.6 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|336255113|ref|YP_004598220.1| - 4.4e-08 32.8 33.5 0.0041 17.3 1.9 4.4 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_3 PF12798.2 gi|336255113|ref|YP_004598220.1| - 1.1e-07 31.9 40.6 0.046 14.2 3.3 4.3 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_21 PF14697.1 gi|336255113|ref|YP_004598220.1| - 2e-06 27.5 25.9 4e-05 23.3 5.4 3.5 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|336255113|ref|YP_004598220.1| - 4.7e-06 26.2 35.6 0.0058 16.4 0.5 5.0 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_17 PF13534.1 gi|336255113|ref|YP_004598220.1| - 0.00012 22.3 26.6 0.034 14.5 0.5 4.3 2 2 2 4 4 4 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|336255113|ref|YP_004598220.1| - 0.00028 21.5 24.9 0.61 10.8 0.6 4.5 1 1 3 4 4 4 2 4Fe-4S double cluster binding domain Fer4_18 PF13746.1 gi|336255113|ref|YP_004598220.1| - 0.0096 16.3 8.3 0.051 13.9 1.1 4.3 3 2 1 4 4 3 2 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|336255113|ref|YP_004598220.1| - 0.042 14.2 0.4 0.042 14.2 0.3 3.9 3 1 0 3 3 3 0 4Fe-4S single cluster domain Churchill PF06573.6 gi|336255113|ref|YP_004598220.1| - 0.48 10.4 5.7 19 5.2 0.0 3.1 2 1 1 3 3 3 0 Churchill protein Fer4_15 PF13459.1 gi|336255113|ref|YP_004598220.1| - 3.2 8.3 26.0 5.7 7.5 5.4 3.7 1 1 2 3 3 3 0 4Fe-4S single cluster domain Molybdopterin PF00384.17 gi|336255114|ref|YP_004598221.1| - 6.2e-52 176.7 2.1 1e-51 176.0 1.4 1.4 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|336255114|ref|YP_004598221.1| - 1.1e-19 70.3 0.1 6.3e-19 67.8 0.0 2.3 2 0 0 2 2 2 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|336255114|ref|YP_004598221.1| - 1.2e-13 50.6 0.2 2.2e-13 49.8 0.2 1.5 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain TAT_signal PF10518.4 gi|336255114|ref|YP_004598221.1| - 0.0024 17.7 1.6 0.0053 16.6 1.1 1.6 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence FlpD PF02662.11 gi|336255115|ref|YP_004598222.1| - 3.6e-26 91.2 0.0 1.3e-25 89.4 0.0 2.0 1 0 0 1 1 1 1 Methyl-viologen-reducing hydrogenase, delta subunit Fer4_7 PF12838.2 gi|336255115|ref|YP_004598222.1| - 2.6e-15 56.5 36.9 2.7e-09 37.2 6.4 5.6 3 2 2 5 5 5 4 4Fe-4S dicluster domain Fer4 PF00037.22 gi|336255115|ref|YP_004598222.1| - 1.4e-14 52.9 42.9 4.7e-06 25.9 0.8 7.3 7 0 0 7 7 7 4 4Fe-4S binding domain Fer4_16 PF13484.1 gi|336255115|ref|YP_004598222.1| - 4.2e-12 46.6 27.8 0.002 18.8 0.3 6.5 5 1 1 6 6 6 4 4Fe-4S double cluster binding domain Fer4_10 PF13237.1 gi|336255115|ref|YP_004598222.1| - 1.4e-11 44.0 35.4 1.4e-05 24.7 6.2 4.9 4 1 0 4 4 4 3 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|336255115|ref|YP_004598222.1| - 4.5e-11 42.8 37.5 3.2e-06 27.3 6.4 5.2 3 2 2 5 5 5 5 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|336255115|ref|YP_004598222.1| - 9.2e-10 38.4 25.8 0.027 14.4 1.1 5.5 4 1 2 6 6 6 5 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|336255115|ref|YP_004598222.1| - 3.4e-09 36.9 17.5 0.018 15.3 0.1 5.9 5 0 0 5 5 5 4 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|336255115|ref|YP_004598222.1| - 8.6e-08 31.7 49.7 1.4e-05 24.6 0.5 7.2 7 0 0 7 7 7 4 4Fe-4S binding domain Fer4_21 PF14697.1 gi|336255115|ref|YP_004598222.1| - 1.2e-07 31.4 33.2 1.7e-05 24.5 3.3 5.4 3 2 3 6 6 6 5 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|336255115|ref|YP_004598222.1| - 0.00073 19.3 44.2 0.002 17.9 1.4 5.9 6 0 0 6 6 5 3 4Fe-4S binding domain Fer4_4 PF12800.2 gi|336255115|ref|YP_004598222.1| - 0.0078 16.4 3.8 0.0078 16.4 2.6 6.6 7 0 0 7 7 6 4 4Fe-4S binding domain Fer4_18 PF13746.1 gi|336255115|ref|YP_004598222.1| - 0.32 11.4 39.1 1.1 9.7 1.6 6.3 4 2 2 6 6 5 0 4Fe-4S dicluster domain Nitrate_red_del PF02613.10 gi|336255116|ref|YP_004598223.1| - 8.9e-21 74.1 0.2 1.3e-20 73.6 0.1 1.3 1 0 0 1 1 1 1 Nitrate reductase delta subunit OppC_N PF12911.2 gi|336255119|ref|YP_004598226.1| - 0.022 14.1 2.3 2.7 7.4 0.1 2.1 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C DUF1469 PF07332.6 gi|336255119|ref|YP_004598226.1| - 0.066 12.9 4.1 0.088 12.5 2.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) DUF2517 PF10725.4 gi|336255119|ref|YP_004598226.1| - 0.46 10.2 0.1 0.46 10.2 0.1 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF2517) TOMM6 PF15184.1 gi|336255119|ref|YP_004598226.1| - 5.5 6.3 7.1 0.36 10.1 0.2 2.3 2 1 1 3 3 3 0 Mitochondrial import receptor subunit TOM6 homolog AFOR_C PF01314.13 gi|336255121|ref|YP_004598228.1| - 7.9e-99 330.9 0.0 1e-98 330.5 0.0 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|336255121|ref|YP_004598228.1| - 2.5e-64 216.3 0.1 3.7e-64 215.8 0.0 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain Glyco_trans_4_4 PF13579.1 gi|336255122|ref|YP_004598229.1| - 4e-18 66.0 5.3 4e-18 66.0 3.7 2.4 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|336255122|ref|YP_004598229.1| - 3.6e-12 46.3 0.0 1.6e-11 44.2 0.0 2.0 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.15 gi|336255122|ref|YP_004598229.1| - 1.1e-10 41.1 0.0 1.4e-10 40.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|336255122|ref|YP_004598229.1| - 0.0023 17.7 0.0 0.0048 16.7 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like Peptidase_S9 PF00326.16 gi|336255124|ref|YP_004598231.1| - 6.1e-48 162.8 0.0 1.1e-47 162.0 0.0 1.4 1 0 0 1 1 1 1 Prolyl oligopeptidase family DLH PF01738.13 gi|336255124|ref|YP_004598231.1| - 5.8e-11 42.0 0.1 1e-09 38.0 0.1 2.1 1 1 0 1 1 1 1 Dienelactone hydrolase family Peptidase_S15 PF02129.13 gi|336255124|ref|YP_004598231.1| - 8.3e-11 41.8 0.0 1e-08 34.9 0.1 2.2 1 1 1 2 2 2 1 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_5 PF12695.2 gi|336255124|ref|YP_004598231.1| - 7.4e-10 38.7 0.0 1.4e-09 37.8 0.0 1.4 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|336255124|ref|YP_004598231.1| - 8.2e-09 35.6 0.4 2.7e-08 34.0 0.3 1.8 1 1 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S9_N PF02897.10 gi|336255124|ref|YP_004598231.1| - 1.4e-06 27.1 0.1 6.2e-06 25.0 0.1 1.9 1 1 1 2 2 2 1 Prolyl oligopeptidase, N-terminal beta-propeller domain Abhydrolase_3 PF07859.8 gi|336255124|ref|YP_004598231.1| - 9.2e-05 22.1 0.1 0.0022 17.5 0.0 2.2 1 1 0 1 1 1 1 alpha/beta hydrolase fold PD40 PF07676.7 gi|336255124|ref|YP_004598231.1| - 0.0001 21.8 7.4 0.0031 17.1 0.2 4.8 5 0 0 5 5 5 1 WD40-like Beta Propeller Repeat Abhydrolase_1 PF00561.15 gi|336255124|ref|YP_004598231.1| - 0.00011 21.7 0.0 0.022 14.3 0.0 2.3 1 1 1 2 2 2 1 alpha/beta hydrolase fold AXE1 PF05448.7 gi|336255124|ref|YP_004598231.1| - 0.00017 20.1 0.0 0.0097 14.4 0.0 2.1 1 1 0 1 1 1 1 Acetyl xylan esterase (AXE1) BAAT_C PF08840.6 gi|336255124|ref|YP_004598231.1| - 0.00065 19.4 0.0 0.01 15.5 0.0 2.1 1 1 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal PepSY_2 PF13670.1 gi|336255124|ref|YP_004598231.1| - 0.001 18.8 0.2 0.1 12.5 0.0 2.6 2 0 0 2 2 2 1 Peptidase propeptide and YPEB domain Abhydrolase_2 PF02230.11 gi|336255124|ref|YP_004598231.1| - 0.003 17.0 0.0 0.91 8.9 0.0 2.2 2 0 0 2 2 2 1 Phospholipase/Carboxylesterase Kelch_3 PF13415.1 gi|336255124|ref|YP_004598231.1| - 0.0046 17.0 0.6 6.7 7.0 0.0 4.1 3 0 0 3 3 3 1 Galactose oxidase, central domain DPPIV_N PF00930.16 gi|336255124|ref|YP_004598231.1| - 0.0084 14.7 0.0 4.7 5.6 0.0 3.3 2 1 2 4 4 4 1 Dipeptidyl peptidase IV (DPP IV) N-terminal region Abhydrolase_4 PF08386.5 gi|336255124|ref|YP_004598231.1| - 0.014 15.2 0.0 0.036 13.9 0.0 1.6 1 0 0 1 1 1 0 TAP-like protein Esterase PF00756.15 gi|336255124|ref|YP_004598231.1| - 0.035 13.5 0.0 0.16 11.3 0.0 2.1 2 0 0 2 2 2 0 Putative esterase DUF829 PF05705.9 gi|336255124|ref|YP_004598231.1| - 0.091 12.4 0.0 0.16 11.6 0.0 1.3 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF829) Inh PF02974.9 gi|336255124|ref|YP_004598231.1| - 0.11 12.0 0.0 8.7 5.9 0.0 3.5 4 0 0 4 4 4 0 Protease inhibitor Inh ABC_tran PF00005.22 gi|336255125|ref|YP_004598232.1| - 1.6e-27 96.4 0.0 2.7e-27 95.7 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|336255125|ref|YP_004598232.1| - 1.9e-12 47.7 0.0 3.1e-08 33.9 0.0 2.1 1 1 1 2 2 2 2 AAA domain DUF258 PF03193.11 gi|336255125|ref|YP_004598232.1| - 0.0078 15.4 0.0 0.012 14.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|336255125|ref|YP_004598232.1| - 0.012 15.9 0.0 0.02 15.2 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|336255125|ref|YP_004598232.1| - 0.013 14.9 0.0 0.028 13.9 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain MMR_HSR1 PF01926.18 gi|336255125|ref|YP_004598232.1| - 0.019 14.9 0.0 0.039 13.9 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_30 PF13604.1 gi|336255125|ref|YP_004598232.1| - 0.022 14.3 0.0 0.049 13.2 0.0 1.7 1 1 0 1 1 1 0 AAA domain MobB PF03205.9 gi|336255125|ref|YP_004598232.1| - 0.077 12.7 0.0 0.26 10.9 0.0 1.8 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.1 gi|336255125|ref|YP_004598232.1| - 0.09 12.7 0.0 0.16 11.9 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain AAA_10 PF12846.2 gi|336255125|ref|YP_004598232.1| - 0.12 11.7 0.0 0.21 10.9 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain ABC2_membrane_2 PF12679.2 gi|336255126|ref|YP_004598233.1| - 6.6e-40 136.7 12.6 8.1e-40 136.4 8.8 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|336255126|ref|YP_004598233.1| - 4.3e-21 75.1 13.5 5.7e-21 74.7 9.4 1.2 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|336255126|ref|YP_004598233.1| - 2.3e-12 46.6 4.0 4.5e-12 45.7 2.8 1.4 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|336255126|ref|YP_004598233.1| - 1.5e-09 37.3 12.3 1.5e-09 37.3 8.5 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein DUF2074 PF09847.4 gi|336255126|ref|YP_004598233.1| - 0.00012 21.0 2.7 0.00015 20.6 1.9 1.2 1 0 0 1 1 1 1 Predicted permease (DUF2074) ABC2_membrane PF01061.19 gi|336255126|ref|YP_004598233.1| - 0.00017 20.8 14.1 0.00017 20.8 9.8 1.5 2 0 0 2 2 2 1 ABC-2 type transporter DUF872 PF05915.7 gi|336255126|ref|YP_004598233.1| - 0.4 10.5 4.6 0.14 11.9 1.0 1.8 2 0 0 2 2 2 0 Eukaryotic protein of unknown function (DUF872) RsbU_N PF08673.5 gi|336255128|ref|YP_004598235.1| - 0.091 12.7 0.0 0.3 11.1 0.0 1.8 2 0 0 2 2 2 0 Phosphoserine phosphatase RsbU, N-terminal domain SPT6_acidic PF14632.1 gi|336255129|ref|YP_004598236.1| - 2.4 8.3 8.9 3.3 7.9 6.2 1.2 1 0 0 1 1 1 0 Acidic N-terminal SPT6 Nitrate_red_del PF02613.10 gi|336255130|ref|YP_004598237.1| - 5.5e-22 78.0 0.2 7.9e-22 77.5 0.1 1.2 1 0 0 1 1 1 1 Nitrate reductase delta subunit FlpD PF02662.11 gi|336255131|ref|YP_004598238.1| - 5.1e-25 87.5 0.0 1.5e-24 86.0 0.0 1.9 1 0 0 1 1 1 1 Methyl-viologen-reducing hydrogenase, delta subunit Fer4_7 PF12838.2 gi|336255131|ref|YP_004598238.1| - 4.5e-14 52.5 47.1 7.3e-09 35.8 8.4 6.2 5 3 2 7 7 6 4 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|336255131|ref|YP_004598238.1| - 8.7e-13 48.8 29.3 0.00058 20.5 0.2 7.1 6 1 1 7 7 6 4 4Fe-4S double cluster binding domain Fer4 PF00037.22 gi|336255131|ref|YP_004598238.1| - 1.6e-12 46.4 53.9 7.3e-06 25.3 1.3 7.7 8 0 0 8 8 8 5 4Fe-4S binding domain Fer4_9 PF13187.1 gi|336255131|ref|YP_004598238.1| - 2.7e-09 37.1 47.6 8.7e-06 25.9 7.8 5.4 4 2 0 4 4 4 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|336255131|ref|YP_004598238.1| - 1.8e-08 34.0 33.2 0.00029 20.6 5.6 5.4 4 1 2 6 6 6 5 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|336255131|ref|YP_004598238.1| - 2.8e-08 33.4 47.2 2.3e-05 24.1 7.3 5.3 4 2 0 4 4 4 3 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|336255131|ref|YP_004598238.1| - 6.6e-08 32.4 29.4 0.04 13.9 2.8 5.7 4 1 2 6 6 6 4 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|336255131|ref|YP_004598238.1| - 2e-06 27.4 11.5 6.8e-06 25.7 1.6 8.0 9 0 0 9 9 7 3 4Fe-4S binding domain Fer4_11 PF13247.1 gi|336255131|ref|YP_004598238.1| - 2.1e-05 24.3 18.9 0.0018 18.1 0.9 3.6 4 0 0 4 4 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|336255131|ref|YP_004598238.1| - 0.0019 18.0 2.7 0.0019 18.0 1.9 6.6 7 0 0 7 7 6 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|336255131|ref|YP_004598238.1| - 0.0026 18.0 31.5 0.0071 16.6 0.2 5.9 4 1 3 7 7 7 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|336255131|ref|YP_004598238.1| - 0.011 16.0 4.6 0.011 16.0 3.2 7.2 9 0 0 9 9 6 0 4Fe-4S binding domain Haemolytic PF01809.13 gi|336255131|ref|YP_004598238.1| - 0.057 13.0 0.2 0.34 10.5 0.1 2.1 2 0 0 2 2 2 0 Haemolytic domain Fer4_3 PF12798.2 gi|336255131|ref|YP_004598238.1| - 1.6 9.4 65.7 0.04 14.4 2.1 7.8 8 0 0 8 8 6 0 4Fe-4S binding domain Fer4_18 PF13746.1 gi|336255131|ref|YP_004598238.1| - 8.2 6.9 40.2 2 8.8 3.1 6.1 3 2 2 5 5 5 0 4Fe-4S dicluster domain Molybdopterin PF00384.17 gi|336255132|ref|YP_004598239.1| - 1.3e-48 165.8 2.6 6.6e-48 163.5 1.8 1.9 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|336255132|ref|YP_004598239.1| - 1.4e-16 60.2 0.0 3.9e-16 58.8 0.0 1.8 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|336255132|ref|YP_004598239.1| - 2.1e-11 43.4 0.2 4.2e-11 42.4 0.1 1.6 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain TAT_signal PF10518.4 gi|336255132|ref|YP_004598239.1| - 0.036 14.0 2.3 0.089 12.8 1.6 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Prothymosin PF03247.9 gi|336255132|ref|YP_004598239.1| - 0.094 12.8 13.6 0.32 11.1 9.4 1.9 1 0 0 1 1 1 0 Prothymosin/parathymosin family Fer4_11 PF13247.1 gi|336255133|ref|YP_004598240.1| - 1.1e-22 79.7 10.7 1.1e-22 79.7 7.4 2.0 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|336255133|ref|YP_004598240.1| - 2.2e-14 53.5 22.4 8.2e-08 32.5 4.3 2.6 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|336255133|ref|YP_004598240.1| - 7.3e-12 45.3 27.0 1.4e-06 28.4 5.4 3.2 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.22 gi|336255133|ref|YP_004598240.1| - 1.4e-08 33.9 40.4 2.4e-05 23.7 1.1 5.5 6 0 0 6 6 6 3 4Fe-4S binding domain Fer4_6 PF12837.2 gi|336255133|ref|YP_004598240.1| - 1.6e-08 34.0 37.9 0.00079 19.2 0.7 5.0 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_8 PF13183.1 gi|336255133|ref|YP_004598240.1| - 6.8e-08 32.4 20.6 5.4e-05 23.1 4.4 2.6 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|336255133|ref|YP_004598240.1| - 1.4e-07 31.2 25.6 2.2e-05 24.2 5.6 3.6 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|336255133|ref|YP_004598240.1| - 1.7e-07 30.9 30.2 0.0014 18.3 8.0 3.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|336255133|ref|YP_004598240.1| - 2.7e-06 26.9 37.8 0.00035 20.3 2.8 4.6 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_3 PF12798.2 gi|336255133|ref|YP_004598240.1| - 1.2e-05 25.4 43.0 0.07 13.7 4.3 4.3 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_4 PF12800.2 gi|336255133|ref|YP_004598240.1| - 2.8e-05 24.0 32.8 0.004 17.3 1.6 4.4 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_16 PF13484.1 gi|336255133|ref|YP_004598240.1| - 0.0024 18.5 28.4 0.057 14.1 0.9 4.4 1 1 3 4 4 4 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|336255133|ref|YP_004598240.1| - 0.02 15.2 29.6 0.068 13.5 7.0 3.9 2 2 2 4 4 4 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|336255133|ref|YP_004598240.1| - 0.07 13.5 0.5 0.07 13.5 0.4 4.4 2 1 1 3 3 2 0 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|336255133|ref|YP_004598240.1| - 7.8 7.1 27.3 0.99 10.0 0.5 4.3 2 1 1 3 3 3 0 4Fe-4S single cluster domain DUF1183 PF06682.7 gi|336255134|ref|YP_004598241.1| - 1.1 8.8 11.4 1.3 8.6 0.0 2.5 2 1 1 3 3 3 0 Protein of unknown function (DUF1183) Cytochrom_B_N PF00033.14 gi|336255135|ref|YP_004598242.1| - 2.4e-26 92.2 15.3 2.7e-23 82.2 9.8 2.0 2 0 0 2 2 2 2 Cytochrome b(N-terminal)/b6/petB Ni_hydr_CYTB PF01292.15 gi|336255135|ref|YP_004598242.1| - 8.1e-20 70.9 16.1 1.4e-19 70.2 8.3 2.0 2 0 0 2 2 2 1 Prokaryotic cytochrome b561 PepSY_TM_2 PF13703.1 gi|336255135|ref|YP_004598242.1| - 1.6 8.9 23.6 0.12 12.6 2.9 3.7 4 0 0 4 4 4 0 PepSY-associated TM helix DUF4282 PF14110.1 gi|336255136|ref|YP_004598243.1| - 0.33 11.1 4.0 0.42 10.8 2.8 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4282) Glug PF07581.7 gi|336255136|ref|YP_004598243.1| - 1.9 8.8 5.2 5.6 7.3 3.6 1.9 1 1 0 1 1 1 0 The GLUG motif Fe-ADH_2 PF13685.1 gi|336255137|ref|YP_004598244.1| - 2.5e-60 203.8 1.1 3.1e-60 203.5 0.7 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.14 gi|336255137|ref|YP_004598244.1| - 8.8e-23 80.5 6.3 1.6e-22 79.6 4.4 1.3 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.15 gi|336255137|ref|YP_004598244.1| - 2e-09 36.7 0.1 6.2e-09 35.1 0.1 1.6 1 1 0 1 1 1 1 3-dehydroquinate synthase adh_short_C2 PF13561.1 gi|336255138|ref|YP_004598245.1| - 3.3e-37 128.5 0.3 3.7e-37 128.3 0.2 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|336255138|ref|YP_004598245.1| - 2.2e-33 115.5 3.7 2.8e-33 115.2 2.6 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|336255138|ref|YP_004598245.1| - 1.8e-16 60.3 1.4 2.3e-16 59.9 1.0 1.1 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.1 gi|336255138|ref|YP_004598245.1| - 4.6e-05 23.5 3.3 0.00012 22.0 2.3 1.6 1 1 0 1 1 1 1 NADH(P)-binding F420_oxidored PF03807.12 gi|336255138|ref|YP_004598245.1| - 0.005 17.2 3.2 0.023 15.1 0.5 2.6 1 1 1 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|336255138|ref|YP_004598245.1| - 0.0085 15.2 0.1 0.013 14.6 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Eno-Rase_NADH_b PF12242.3 gi|336255138|ref|YP_004598245.1| - 0.014 15.1 0.4 0.039 13.7 0.3 1.7 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase NmrA PF05368.8 gi|336255138|ref|YP_004598245.1| - 0.016 14.4 0.3 0.022 14.0 0.2 1.2 1 0 0 1 1 1 0 NmrA-like family 3HCDH_N PF02737.13 gi|336255138|ref|YP_004598245.1| - 0.043 13.4 0.5 0.073 12.7 0.3 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DUF2190 PF09956.4 gi|336255138|ref|YP_004598245.1| - 0.044 13.5 0.1 0.3 10.8 0.1 2.3 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2190) Pam16 PF03656.8 gi|336255138|ref|YP_004598245.1| - 0.093 12.5 1.4 2.8 7.7 0.2 2.3 2 0 0 2 2 2 0 Pam16 RmlD_sub_bind PF04321.12 gi|336255138|ref|YP_004598245.1| - 0.096 11.5 0.2 0.14 10.9 0.1 1.3 1 0 0 1 1 1 0 RmlD substrate binding domain THF_DHG_CYH_C PF02882.14 gi|336255138|ref|YP_004598245.1| - 0.1 11.6 0.2 0.66 9.0 0.0 2.0 2 0 0 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Epimerase PF01370.16 gi|336255138|ref|YP_004598245.1| - 0.12 11.7 0.1 0.15 11.4 0.1 1.2 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family MatE PF01554.13 gi|336255139|ref|YP_004598246.1| - 9.2e-46 155.4 26.6 5e-24 84.7 5.2 2.6 3 0 0 3 3 3 2 MatE MVIN PF03023.9 gi|336255139|ref|YP_004598246.1| - 2.9e-11 42.4 7.9 1.3e-09 37.0 1.6 2.7 2 1 1 3 3 3 2 MviN-like protein Polysacc_synt_C PF14667.1 gi|336255139|ref|YP_004598246.1| - 8.2e-10 38.6 4.2 8.2e-10 38.6 2.9 3.9 4 0 0 4 4 4 2 Polysaccharide biosynthesis C-terminal domain MR_MLE_C PF13378.1 gi|336255141|ref|YP_004598248.1| - 5.3e-30 103.6 0.0 2e-29 101.8 0.0 1.9 2 0 0 2 2 2 1 Enolase C-terminal domain-like MR_MLE_N PF02746.11 gi|336255141|ref|YP_004598248.1| - 4.5e-16 58.8 0.0 8.4e-16 58.0 0.0 1.4 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MR_MLE PF01188.16 gi|336255141|ref|YP_004598248.1| - 4.4e-15 55.9 0.3 4.4e-15 55.9 0.2 3.0 4 0 0 4 4 4 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain SBP_bac_11 PF13531.1 gi|336255141|ref|YP_004598248.1| - 0.1 12.1 0.1 0.2 11.2 0.1 1.4 1 1 0 1 1 1 0 Bacterial extracellular solute-binding protein Aldedh PF00171.17 gi|336255142|ref|YP_004598249.1| - 7.8e-163 542.0 2.2 8.7e-163 541.9 1.5 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.9 gi|336255142|ref|YP_004598249.1| - 0.0011 17.7 0.0 0.0026 16.5 0.0 1.5 2 0 0 2 2 2 1 Acyl-CoA reductase (LuxC) FAA_hydrolase PF01557.13 gi|336255143|ref|YP_004598250.1| - 3.7e-30 105.0 0.0 5.2e-30 104.5 0.0 1.2 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family SBP_bac_5 PF00496.17 gi|336255144|ref|YP_004598251.1| - 1.7e-25 89.6 3.7 5.8e-25 87.9 2.6 1.9 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.4 gi|336255144|ref|YP_004598251.1| - 0.19 11.8 6.3 0.31 11.1 4.3 1.3 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence GFO_IDH_MocA PF01408.17 gi|336255145|ref|YP_004598252.1| - 3.8e-21 75.8 0.4 8.3e-21 74.7 0.3 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|336255145|ref|YP_004598252.1| - 2.9e-06 27.0 0.0 6.1e-06 26.0 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain Semialdhyde_dh PF01118.19 gi|336255145|ref|YP_004598252.1| - 0.0015 18.8 0.1 0.0032 17.7 0.0 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Shikimate_DH PF01488.15 gi|336255145|ref|YP_004598252.1| - 0.033 14.2 0.0 0.067 13.2 0.0 1.5 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase TrkA_N PF02254.13 gi|336255145|ref|YP_004598252.1| - 0.074 13.0 0.1 0.13 12.2 0.0 1.5 1 0 0 1 1 1 0 TrkA-N domain ABC_tran PF00005.22 gi|336255146|ref|YP_004598253.1| - 1.5e-23 83.5 0.0 2.1e-23 83.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|336255146|ref|YP_004598253.1| - 2.7e-17 62.8 0.2 4.8e-17 62.0 0.1 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|336255146|ref|YP_004598253.1| - 3.7e-11 43.5 0.3 4.3e-09 36.7 0.2 2.2 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.14 gi|336255146|ref|YP_004598253.1| - 8.6e-06 25.1 0.3 0.02 14.1 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|336255146|ref|YP_004598253.1| - 8.1e-05 22.7 0.1 0.28 11.3 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|336255146|ref|YP_004598253.1| - 0.00072 19.0 0.0 0.0015 17.9 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|336255146|ref|YP_004598253.1| - 0.00084 18.7 0.0 0.021 14.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|336255146|ref|YP_004598253.1| - 0.0073 16.3 0.0 0.014 15.3 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.1 gi|336255146|ref|YP_004598253.1| - 0.0094 15.0 0.1 0.023 13.7 0.0 1.6 2 0 0 2 2 2 1 AAA ATPase domain FtsK_SpoIIIE PF01580.13 gi|336255146|ref|YP_004598253.1| - 0.022 14.2 0.0 0.035 13.5 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_10 PF12846.2 gi|336255146|ref|YP_004598253.1| - 0.031 13.7 0.0 0.17 11.2 0.0 1.9 2 0 0 2 2 2 0 AAA-like domain DUF87 PF01935.12 gi|336255146|ref|YP_004598253.1| - 0.051 13.3 0.0 0.11 12.2 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function DUF87 NACHT PF05729.7 gi|336255146|ref|YP_004598253.1| - 0.061 12.9 0.0 0.1 12.2 0.0 1.3 1 0 0 1 1 1 0 NACHT domain ArgK PF03308.11 gi|336255146|ref|YP_004598253.1| - 0.11 11.2 0.0 0.16 10.7 0.0 1.1 1 0 0 1 1 1 0 ArgK protein KaiC PF06745.8 gi|336255146|ref|YP_004598253.1| - 0.18 10.9 0.0 1.4 8.0 0.0 2.0 2 0 0 2 2 2 0 KaiC ABC_tran PF00005.22 gi|336255147|ref|YP_004598254.1| - 3.2e-28 98.7 0.0 4.6e-28 98.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|336255147|ref|YP_004598254.1| - 2.1e-16 60.0 0.7 4.1e-16 59.0 0.5 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|336255147|ref|YP_004598254.1| - 1.4e-09 38.3 0.5 2.4e-05 24.4 0.1 2.2 1 1 1 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|336255147|ref|YP_004598254.1| - 0.00034 20.7 0.2 0.0016 18.5 0.2 2.0 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|336255147|ref|YP_004598254.1| - 0.004 16.6 0.2 0.008 15.6 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain UPF0079 PF02367.12 gi|336255147|ref|YP_004598254.1| - 0.034 13.7 0.1 0.056 13.0 0.1 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 DUF258 PF03193.11 gi|336255147|ref|YP_004598254.1| - 0.042 13.0 0.0 0.076 12.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|336255147|ref|YP_004598254.1| - 0.044 13.7 0.4 0.094 12.6 0.3 1.7 1 1 0 1 1 1 0 AAA ATPase domain NB-ARC PF00931.17 gi|336255147|ref|YP_004598254.1| - 0.076 11.8 0.0 0.11 11.3 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_10 PF12846.2 gi|336255147|ref|YP_004598254.1| - 0.084 12.2 0.0 0.13 11.6 0.0 1.3 1 1 0 1 1 1 0 AAA-like domain AAA_24 PF13479.1 gi|336255147|ref|YP_004598254.1| - 0.095 12.2 0.0 0.16 11.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|336255147|ref|YP_004598254.1| - 0.11 12.1 0.3 0.19 11.4 0.2 1.3 1 0 0 1 1 1 0 NACHT domain Miro PF08477.8 gi|336255147|ref|YP_004598254.1| - 0.16 12.5 0.0 0.41 11.1 0.0 1.7 1 0 0 1 1 1 0 Miro-like protein AAA_33 PF13671.1 gi|336255147|ref|YP_004598254.1| - 0.17 11.7 0.0 0.28 11.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain Cyto_ox_2 PF02322.10 gi|336255149|ref|YP_004598256.1| - 0.0073 15.5 4.4 0.0086 15.2 3.1 1.0 1 0 0 1 1 1 1 Cytochrome oxidase subunit II Tetraspannin PF00335.15 gi|336255149|ref|YP_004598256.1| - 0.044 13.0 2.2 0.046 12.9 1.5 1.0 1 0 0 1 1 1 0 Tetraspanin family Sensor PF13796.1 gi|336255149|ref|YP_004598256.1| - 0.19 11.3 8.0 0.22 11.1 5.5 1.2 1 0 0 1 1 1 0 Putative sensor DUF3561 PF12084.3 gi|336255149|ref|YP_004598256.1| - 0.27 11.0 8.1 5 7.0 2.7 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3561) FA_desaturase PF00487.19 gi|336255149|ref|YP_004598256.1| - 0.34 10.3 3.8 0.36 10.2 2.7 1.1 1 0 0 1 1 1 0 Fatty acid desaturase Glyco_hydro_67M PF07488.7 gi|336255150|ref|YP_004598257.1| - 4.8e-125 416.7 0.0 6.1e-125 416.4 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolase family 67 middle domain Glyco_hydro_67C PF07477.7 gi|336255150|ref|YP_004598257.1| - 8.1e-80 267.4 0.0 1.2e-79 266.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase family 67 C-terminus Glyco_hydro_67N PF03648.9 gi|336255150|ref|YP_004598257.1| - 2e-27 95.6 0.0 3e-27 95.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase family 67 N-terminus Glyco_hydro_10 PF00331.15 gi|336255151|ref|YP_004598258.1| - 7.4e-36 123.7 0.4 7.4e-36 123.7 0.3 1.5 2 0 0 2 2 2 1 Glycosyl hydrolase family 10 Big_3 PF07523.7 gi|336255151|ref|YP_004598258.1| - 0.00016 21.6 3.3 0.034 14.2 0.6 2.8 2 0 0 2 2 2 2 Bacterial Ig-like domain (group 3) CarboxypepD_reg PF13620.1 gi|336255151|ref|YP_004598258.1| - 0.00064 19.7 1.3 0.43 10.6 0.3 2.4 2 0 0 2 2 2 2 Carboxypeptidase regulatory-like domain YtkA PF13115.1 gi|336255151|ref|YP_004598258.1| - 6 7.3 8.5 1.3 9.4 0.3 3.5 3 1 1 4 4 4 0 YtkA-like Glyco_hydro_10 PF00331.15 gi|336255152|ref|YP_004598259.1| - 8e-95 317.5 0.0 8.9e-95 317.3 0.0 1.0 1 0 0 1 1 1 1 Glycosyl hydrolase family 10 Cellulase-like PF12876.2 gi|336255152|ref|YP_004598259.1| - 2.4e-05 24.6 0.2 0.054 13.9 0.1 3.1 3 1 0 3 3 3 2 Sugar-binding cellulase-like Cellulase PF00150.13 gi|336255152|ref|YP_004598259.1| - 0.0019 17.4 0.6 0.14 11.3 0.3 2.4 2 1 0 2 2 2 1 Cellulase (glycosyl hydrolase family 5) AP_endonuc_2 PF01261.19 gi|336255152|ref|YP_004598259.1| - 0.0039 16.5 0.1 0.0086 15.3 0.0 1.7 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel Choline_sulf_C PF12411.3 gi|336255152|ref|YP_004598259.1| - 0.12 12.2 1.6 0.26 11.1 0.5 2.0 1 1 1 2 2 2 0 Choline sulfatase enzyme C terminal DUF1049 PF06305.6 gi|336255153|ref|YP_004598260.1| - 0.00098 18.5 0.1 0.0056 16.1 0.0 2.0 1 1 0 1 1 1 1 Protein of unknown function (DUF1049) Tmemb_14 PF03647.8 gi|336255153|ref|YP_004598260.1| - 0.07 13.5 0.4 0.088 13.2 0.3 1.1 1 0 0 1 1 1 0 Transmembrane proteins 14C CcmD PF04995.9 gi|336255153|ref|YP_004598260.1| - 0.15 11.8 0.0 0.15 11.8 0.0 1.8 2 0 0 2 2 2 0 Heme exporter protein D (CcmD) CytB6-F_Fe-S PF08802.5 gi|336255153|ref|YP_004598260.1| - 5.7 7.0 5.3 5.5 7.0 0.5 2.1 2 0 0 2 2 2 0 Cytochrome B6-F complex Fe-S subunit Bac_luciferase PF00296.15 gi|336255154|ref|YP_004598261.1| - 7.6e-70 235.4 7.4 9.3e-70 235.1 5.1 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase Radical_SAM PF04055.16 gi|336255154|ref|YP_004598261.1| - 0.075 13.2 0.1 0.66 10.1 0.1 2.3 2 1 0 2 2 2 0 Radical SAM superfamily UxaC PF02614.9 gi|336255155|ref|YP_004598262.1| - 5.7e-134 447.2 0.0 6.4e-134 447.0 0.0 1.0 1 0 0 1 1 1 1 Glucuronate isomerase Glyco_hydro_11 PF00457.12 gi|336255156|ref|YP_004598263.1| - 7.2e-75 250.3 15.0 7.2e-75 250.3 10.4 2.3 2 0 0 2 2 2 2 Glycosyl hydrolases family 11 RicinB_lectin_2 PF14200.1 gi|336255156|ref|YP_004598263.1| - 5.5e-39 132.7 9.4 1.2e-27 96.3 1.6 3.5 2 1 1 3 3 3 2 Ricin-type beta-trefoil lectin domain-like Ricin_B_lectin PF00652.17 gi|336255156|ref|YP_004598263.1| - 6.7e-19 68.1 6.9 1.5e-18 66.9 3.6 2.6 2 1 0 2 2 2 1 Ricin-type beta-trefoil lectin domain Glyco_hydro_3 PF00933.16 gi|336255157|ref|YP_004598264.1| - 8.8e-78 261.2 0.0 1.1e-77 260.9 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain Glyco_hydro_3_C PF01915.17 gi|336255157|ref|YP_004598264.1| - 8.5e-60 202.0 1.8 1e-59 201.8 0.4 1.8 3 0 0 3 3 3 1 Glycosyl hydrolase family 3 C-terminal domain Fn3-like PF14310.1 gi|336255157|ref|YP_004598264.1| - 5.8e-18 64.5 0.0 2.1e-17 62.8 0.0 2.0 2 0 0 2 2 2 1 Fibronectin type III-like domain BPD_transp_1 PF00528.17 gi|336255158|ref|YP_004598265.1| - 2e-54 183.9 33.6 8.3e-31 106.9 7.0 3.3 2 1 1 3 3 3 2 Binding-protein-dependent transport system inner membrane component Glyco_hydro_4 PF02056.11 gi|336255159|ref|YP_004598266.1| - 2.7e-41 140.8 0.0 4e-41 140.3 0.0 1.2 1 0 0 1 1 1 1 Family 4 glycosyl hydrolase Glyco_hydro_4C PF11975.3 gi|336255159|ref|YP_004598266.1| - 5.5e-25 88.5 0.0 1.2e-24 87.4 0.0 1.6 1 1 0 1 1 1 1 Family 4 glycosyl hydrolase C-terminal domain UDPG_MGDP_dh_C PF03720.10 gi|336255159|ref|YP_004598266.1| - 0.0078 16.3 0.0 0.027 14.6 0.0 1.9 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Ldh_1_N PF00056.18 gi|336255159|ref|YP_004598266.1| - 0.042 13.6 0.0 0.82 9.4 0.0 2.6 3 0 0 3 3 3 0 lactate/malate dehydrogenase, NAD binding domain Ribonuc_red_sm PF00268.16 gi|336255159|ref|YP_004598266.1| - 0.044 12.7 0.1 0.17 10.8 0.0 1.9 2 0 0 2 2 2 0 Ribonucleotide reductase, small chain Usp PF00582.21 gi|336255160|ref|YP_004598267.1| - 2.2e-13 50.5 0.3 6.9e-13 48.9 0.2 1.6 1 1 0 1 1 1 1 Universal stress protein family BPD_transp_1 PF00528.17 gi|336255161|ref|YP_004598268.1| - 6.1e-22 78.0 17.7 6.1e-22 78.0 12.2 2.1 1 1 1 2 2 2 2 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|336255162|ref|YP_004598269.1| - 9.6e-18 64.3 19.1 9.6e-18 64.3 13.2 2.5 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_8 PF13416.1 gi|336255163|ref|YP_004598270.1| - 5.6e-20 72.2 9.2 5.6e-20 72.2 6.4 1.7 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|336255163|ref|YP_004598270.1| - 7.3e-19 68.6 5.3 1.3e-18 67.8 3.7 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.4 gi|336255163|ref|YP_004598270.1| - 0.00012 21.7 1.9 0.00027 20.6 1.3 1.6 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Cpn60_TCP1 PF00118.19 gi|336255165|ref|YP_004598272.1| - 3.2e-84 283.3 0.0 4e-84 282.9 0.0 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family PT-VENN PF04829.8 gi|336255166|ref|YP_004598273.1| - 0.38 10.3 2.4 1.5 8.4 0.7 2.1 2 0 0 2 2 2 0 Pre-toxin domain with VENN motif ABC_tran PF00005.22 gi|336255167|ref|YP_004598274.1| - 1.8e-30 105.9 0.0 4.5e-30 104.7 0.0 1.6 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|336255167|ref|YP_004598274.1| - 1.2e-08 35.3 0.0 5.9e-06 26.4 0.0 2.2 1 1 0 1 1 1 1 AAA domain TOBE_2 PF08402.5 gi|336255167|ref|YP_004598274.1| - 2.1e-05 24.4 0.9 0.00035 20.4 0.1 2.8 2 1 1 3 3 3 1 TOBE domain AAA_29 PF13555.1 gi|336255167|ref|YP_004598274.1| - 0.00029 20.2 0.1 0.0011 18.3 0.0 1.9 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|336255167|ref|YP_004598274.1| - 0.00087 19.4 0.1 0.0022 18.1 0.1 1.8 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|336255167|ref|YP_004598274.1| - 0.00092 18.5 0.1 0.64 9.1 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|336255167|ref|YP_004598274.1| - 0.0013 18.7 0.4 0.0035 17.3 0.2 1.9 1 1 0 1 1 1 1 AAA ATPase domain DUF258 PF03193.11 gi|336255167|ref|YP_004598274.1| - 0.0015 17.7 0.0 0.0027 16.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_33 PF13671.1 gi|336255167|ref|YP_004598274.1| - 0.0024 17.7 0.2 0.0083 16.0 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|336255167|ref|YP_004598274.1| - 0.005 17.6 0.4 0.014 16.1 0.1 2.1 2 1 0 2 2 1 1 AAA domain AAA_25 PF13481.1 gi|336255167|ref|YP_004598274.1| - 0.017 14.5 0.0 0.12 11.7 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.1 gi|336255167|ref|YP_004598274.1| - 0.018 14.0 0.0 0.33 9.9 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_10 PF12846.2 gi|336255167|ref|YP_004598274.1| - 0.036 13.5 0.1 0.074 12.4 0.0 1.5 1 0 0 1 1 1 0 AAA-like domain MobB PF03205.9 gi|336255167|ref|YP_004598274.1| - 0.041 13.5 0.1 0.1 12.3 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B NACHT PF05729.7 gi|336255167|ref|YP_004598274.1| - 0.064 12.9 0.1 0.15 11.7 0.0 1.6 2 0 0 2 2 2 0 NACHT domain AAA_23 PF13476.1 gi|336255167|ref|YP_004598274.1| - 0.071 13.4 0.2 0.53 10.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain His_Phos_1 PF00300.17 gi|336255167|ref|YP_004598274.1| - 0.12 12.4 0.0 0.3 11.1 0.0 1.8 2 0 0 2 2 2 0 Histidine phosphatase superfamily (branch 1) AAA PF00004.24 gi|336255167|ref|YP_004598274.1| - 0.13 12.4 0.1 0.62 10.2 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Miro PF08477.8 gi|336255167|ref|YP_004598274.1| - 0.15 12.6 0.3 0.61 10.5 0.0 2.2 3 0 0 3 3 3 0 Miro-like protein AP_endonuc_2 PF01261.19 gi|336255168|ref|YP_004598275.1| - 1.2e-33 116.2 1.0 1.6e-33 115.7 0.7 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel AP_endonuc_2_N PF07582.7 gi|336255168|ref|YP_004598275.1| - 8.9e-18 63.5 0.0 1.7e-17 62.7 0.0 1.5 1 0 0 1 1 1 1 AP endonuclease family 2 C terminus CotJB PF12652.2 gi|336255168|ref|YP_004598275.1| - 0.79 9.8 3.0 6.6 6.8 2.1 2.4 1 1 0 1 1 1 0 CotJB protein GFO_IDH_MocA PF01408.17 gi|336255169|ref|YP_004598276.1| - 5.5e-20 72.0 0.3 1e-19 71.1 0.1 1.5 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|336255169|ref|YP_004598276.1| - 7.9e-05 22.4 0.0 0.00019 21.1 0.0 1.7 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain IlvN PF07991.7 gi|336255169|ref|YP_004598276.1| - 0.031 13.6 0.0 0.05 12.9 0.0 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain F420_oxidored PF03807.12 gi|336255169|ref|YP_004598276.1| - 0.1 13.0 0.0 0.23 11.9 0.0 1.6 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Aldedh PF00171.17 gi|336255170|ref|YP_004598277.1| - 2.1e-163 543.9 4.6 2.3e-163 543.8 3.2 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family SBP_bac_5 PF00496.17 gi|336255171|ref|YP_004598278.1| - 3.9e-21 75.2 6.8 3.4e-20 72.2 4.7 2.2 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle FAA_hydrolase PF01557.13 gi|336255172|ref|YP_004598279.1| - 6.4e-30 104.2 0.0 1e-29 103.5 0.0 1.3 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family IclR PF01614.13 gi|336255173|ref|YP_004598280.1| - 5e-38 129.7 0.0 7.2e-38 129.2 0.0 1.2 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|336255173|ref|YP_004598280.1| - 9.9e-13 47.4 0.0 2.9e-12 45.9 0.0 1.8 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|336255173|ref|YP_004598280.1| - 4.9e-06 25.8 0.0 9e-06 24.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|336255173|ref|YP_004598280.1| - 2.6e-05 23.8 0.0 4.5e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|336255173|ref|YP_004598280.1| - 0.00037 20.2 0.0 0.00077 19.2 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|336255173|ref|YP_004598280.1| - 0.00093 19.4 0.0 0.0026 18.0 0.0 1.7 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|336255173|ref|YP_004598280.1| - 0.0017 18.0 0.0 0.0049 16.5 0.0 1.8 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|336255173|ref|YP_004598280.1| - 0.0042 16.7 0.0 0.0079 15.8 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MotA_activ PF09114.5 gi|336255173|ref|YP_004598280.1| - 0.0058 16.3 0.1 0.017 14.8 0.0 1.7 2 0 0 2 2 2 1 Transcription factor MotA, activation domain MarR_2 PF12802.2 gi|336255173|ref|YP_004598280.1| - 0.0091 15.6 0.0 0.017 14.7 0.0 1.4 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.14 gi|336255173|ref|YP_004598280.1| - 0.013 15.4 0.0 0.042 13.7 0.0 1.8 2 0 0 2 2 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_45 PF14947.1 gi|336255173|ref|YP_004598280.1| - 0.031 14.0 0.1 0.091 12.5 0.0 1.7 2 0 0 2 2 2 0 Winged helix-turn-helix HTH_40 PF14493.1 gi|336255173|ref|YP_004598280.1| - 0.035 14.3 0.2 0.12 12.6 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_34 PF13601.1 gi|336255173|ref|YP_004598280.1| - 0.036 14.0 0.0 0.09 12.8 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_11 PF08279.7 gi|336255173|ref|YP_004598280.1| - 0.042 13.4 0.0 0.082 12.5 0.0 1.5 1 0 0 1 1 1 0 HTH domain LexA_DNA_bind PF01726.11 gi|336255173|ref|YP_004598280.1| - 0.056 13.0 0.0 0.11 12.0 0.0 1.5 1 0 0 1 1 1 0 LexA DNA binding domain UPF0122 PF04297.9 gi|336255173|ref|YP_004598280.1| - 0.082 12.9 0.1 0.2 11.6 0.0 1.7 2 0 0 2 2 1 0 Putative helix-turn-helix protein, YlxM / p13 like TetR_N PF00440.18 gi|336255173|ref|YP_004598280.1| - 0.11 12.1 0.0 0.25 11.0 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_10 PF04967.7 gi|336255173|ref|YP_004598280.1| - 0.12 11.9 0.0 0.29 10.7 0.0 1.7 1 0 0 1 1 1 0 HTH DNA binding domain Peripla_BP_4 PF13407.1 gi|336255174|ref|YP_004598281.1| - 1.8e-44 152.0 3.2 2.3e-44 151.7 2.2 1.1 1 0 0 1 1 1 1 Periplasmic binding protein domain Peripla_BP_1 PF00532.16 gi|336255174|ref|YP_004598281.1| - 6.8e-09 35.3 0.1 9.2e-09 34.9 0.1 1.1 1 0 0 1 1 1 1 Periplasmic binding proteins and sugar binding domain of LacI family TAT_signal PF10518.4 gi|336255174|ref|YP_004598281.1| - 0.0036 17.1 0.2 0.0089 15.9 0.1 1.7 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence ABC_tran PF00005.22 gi|336255175|ref|YP_004598282.1| - 3.3e-34 118.1 0.0 5.1e-34 117.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|336255175|ref|YP_004598282.1| - 6.2e-13 49.3 0.0 2.3e-09 37.6 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|336255175|ref|YP_004598282.1| - 6.4e-07 29.1 0.2 0.0067 15.9 0.0 2.2 1 1 0 2 2 2 2 AAA-like domain SMC_N PF02463.14 gi|336255175|ref|YP_004598282.1| - 2e-05 23.9 0.1 0.0014 17.9 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain ABC_ATPase PF09818.4 gi|336255175|ref|YP_004598282.1| - 6.2e-05 21.7 1.9 0.017 13.7 0.3 3.0 2 1 0 2 2 2 1 Predicted ATPase of the ABC class AAA_23 PF13476.1 gi|336255175|ref|YP_004598282.1| - 0.00014 22.2 0.0 0.00023 21.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|336255175|ref|YP_004598282.1| - 0.00021 20.7 0.0 0.00055 19.4 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|336255175|ref|YP_004598282.1| - 0.00031 19.9 0.0 0.00049 19.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 Miro PF08477.8 gi|336255175|ref|YP_004598282.1| - 0.0011 19.4 0.0 0.0029 18.0 0.0 1.7 2 0 0 2 2 1 1 Miro-like protein AAA_22 PF13401.1 gi|336255175|ref|YP_004598282.1| - 0.0015 18.7 0.5 0.016 15.3 0.3 2.1 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|336255175|ref|YP_004598282.1| - 0.0031 16.9 0.0 0.25 10.7 0.0 2.3 2 0 0 2 2 2 1 AAA domain UPF0079 PF02367.12 gi|336255175|ref|YP_004598282.1| - 0.0044 16.6 0.0 0.0085 15.7 0.0 1.5 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 AAA PF00004.24 gi|336255175|ref|YP_004598282.1| - 0.0044 17.2 0.1 0.77 9.9 0.0 2.4 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_15 PF13175.1 gi|336255175|ref|YP_004598282.1| - 0.0067 15.5 0.0 0.4 9.6 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_16 PF13191.1 gi|336255175|ref|YP_004598282.1| - 0.011 15.7 1.1 0.072 13.0 0.8 2.0 1 1 0 1 1 1 0 AAA ATPase domain Dynamin_N PF00350.18 gi|336255175|ref|YP_004598282.1| - 0.016 15.0 0.0 0.027 14.2 0.0 1.4 1 0 0 1 1 1 0 Dynamin family AAA_30 PF13604.1 gi|336255175|ref|YP_004598282.1| - 0.025 14.1 0.0 0.069 12.7 0.0 1.8 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.1 gi|336255175|ref|YP_004598282.1| - 0.034 14.0 0.1 0.11 12.3 0.0 1.9 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit CbiA PF01656.18 gi|336255175|ref|YP_004598282.1| - 0.042 13.2 0.9 0.098 12.0 0.0 1.9 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_33 PF13671.1 gi|336255175|ref|YP_004598282.1| - 0.06 13.2 0.1 0.094 12.5 0.1 1.7 1 1 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|336255175|ref|YP_004598282.1| - 0.1 12.0 0.2 1.9 7.9 0.0 2.2 2 0 0 2 2 2 0 FtsK/SpoIIIE family MMR_HSR1 PF01926.18 gi|336255175|ref|YP_004598282.1| - 0.11 12.4 0.0 0.17 11.8 0.0 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase MobB PF03205.9 gi|336255175|ref|YP_004598282.1| - 0.12 12.0 0.0 0.31 10.7 0.0 1.7 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B BPD_transp_2 PF02653.11 gi|336255176|ref|YP_004598283.1| - 1.1e-50 172.0 38.8 1.5e-50 171.6 26.9 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component DUF1467 PF07330.7 gi|336255176|ref|YP_004598283.1| - 8.2 6.2 8.9 0.11 12.2 0.2 2.4 3 1 0 3 3 3 0 Protein of unknown function (DUF1467) SGL PF08450.7 gi|336255177|ref|YP_004598284.1| - 1.1e-72 244.3 0.0 1.4e-72 244.0 0.0 1.1 1 0 0 1 1 1 1 SMP-30/Gluconolaconase/LRE-like region Epimerase PF01370.16 gi|336255178|ref|YP_004598285.1| - 3.5e-37 128.0 0.5 8.5e-36 123.5 0.4 2.0 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|336255178|ref|YP_004598285.1| - 8.4e-14 51.9 0.1 1.5e-13 51.2 0.1 1.3 1 0 0 1 1 1 1 NADH(P)-binding 3Beta_HSD PF01073.14 gi|336255178|ref|YP_004598285.1| - 4.9e-11 41.8 0.0 9.4e-05 21.2 0.0 2.1 1 1 1 2 2 2 2 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|336255178|ref|YP_004598285.1| - 1.3e-09 37.3 0.1 0.00026 20.0 0.0 2.1 2 0 0 2 2 2 2 RmlD substrate binding domain NAD_binding_4 PF07993.7 gi|336255178|ref|YP_004598285.1| - 2.9e-08 32.9 0.0 0.00011 21.2 0.0 2.2 2 0 0 2 2 2 2 Male sterility protein NmrA PF05368.8 gi|336255178|ref|YP_004598285.1| - 0.0043 16.3 0.0 0.022 14.0 0.0 1.9 2 0 0 2 2 2 1 NmrA-like family TrkA_N PF02254.13 gi|336255178|ref|YP_004598285.1| - 0.0065 16.4 0.0 0.014 15.4 0.0 1.5 1 0 0 1 1 1 1 TrkA-N domain adh_short PF00106.20 gi|336255178|ref|YP_004598285.1| - 0.015 15.2 0.0 0.047 13.5 0.0 1.8 1 1 1 2 2 2 0 short chain dehydrogenase KaiC PF06745.8 gi|336255179|ref|YP_004598286.1| - 1.3e-16 60.4 0.0 1.8e-16 59.9 0.0 1.2 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|336255179|ref|YP_004598286.1| - 4.4e-05 22.9 0.5 0.00015 21.2 0.3 1.8 1 1 0 1 1 1 1 AAA domain zf-FCS PF06467.9 gi|336255179|ref|YP_004598286.1| - 0.0022 17.5 0.0 0.0049 16.4 0.0 1.5 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif AAA_16 PF13191.1 gi|336255179|ref|YP_004598286.1| - 0.031 14.2 0.1 0.052 13.5 0.1 1.3 1 0 0 1 1 1 0 AAA ATPase domain DUF123 PF01986.11 gi|336255181|ref|YP_004598288.1| - 0.00066 19.7 0.2 0.0021 18.1 0.1 1.9 1 0 0 1 1 1 1 Domain of unknown function DUF123 Glu_synthase PF01645.12 gi|336255182|ref|YP_004598289.1| - 3.3e-154 513.2 0.1 8.5e-153 508.6 0.0 2.1 2 0 0 2 2 2 1 Conserved region in glutamate synthase GATase_2 PF00310.16 gi|336255182|ref|YP_004598289.1| - 2.1e-122 408.3 0.0 3.9e-122 407.4 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferases class-II Glu_syn_central PF04898.9 gi|336255182|ref|YP_004598289.1| - 6.4e-112 373.5 0.0 9.7e-112 372.9 0.0 1.3 1 0 0 1 1 1 1 Glutamate synthase central domain GXGXG PF01493.14 gi|336255182|ref|YP_004598289.1| - 4.7e-63 211.8 5.4 7.6e-63 211.1 3.7 1.3 1 0 0 1 1 1 1 GXGXG motif NMO PF03060.10 gi|336255182|ref|YP_004598289.1| - 0.0029 16.8 0.9 0.0054 15.9 0.6 1.4 1 0 0 1 1 1 1 Nitronate monooxygenase FMN_dh PF01070.13 gi|336255182|ref|YP_004598289.1| - 0.32 9.7 9.2 0.014 14.2 1.4 2.3 3 0 0 3 3 3 0 FMN-dependent dehydrogenase Metal_resist PF13801.1 gi|336255182|ref|YP_004598289.1| - 8 6.4 9.3 7.8 6.5 0.0 4.0 4 0 0 4 4 4 0 Heavy-metal resistance HGTP_anticodon PF03129.15 gi|336255183|ref|YP_004598290.1| - 4.4e-20 71.4 0.2 8.5e-20 70.4 0.1 1.5 1 0 0 1 1 1 1 Anticodon binding domain ProRS-C_1 PF09180.6 gi|336255183|ref|YP_004598290.1| - 1.2e-18 66.8 0.7 2.6e-18 65.7 0.5 1.6 1 0 0 1 1 1 1 Prolyl-tRNA synthetase, C-terminal tRNA-synt_2b PF00587.20 gi|336255183|ref|YP_004598290.1| - 6.2e-17 61.7 0.0 1.6e-16 60.3 0.0 1.7 2 0 0 2 2 2 1 tRNA synthetase class II core domain (G, H, P, S and T) NUDIX PF00293.23 gi|336255184|ref|YP_004598291.1| - 5.3e-18 64.9 0.8 6.6e-18 64.6 0.5 1.1 1 0 0 1 1 1 1 NUDIX domain UvrD-helicase PF00580.16 gi|336255185|ref|YP_004598292.1| - 2.3e-49 168.4 0.0 7.1e-49 166.7 0.0 1.8 1 1 0 1 1 1 1 UvrD/REP helicase N-terminal domain UvrD_C PF13361.1 gi|336255185|ref|YP_004598292.1| - 4.9e-34 118.3 0.0 8.6e-34 117.5 0.0 1.4 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain PDDEXK_1 PF12705.2 gi|336255185|ref|YP_004598292.1| - 5.7e-26 91.4 0.3 2e-25 89.6 0.0 2.1 2 0 0 2 2 2 1 PD-(D/E)XK nuclease superfamily AAA_19 PF13245.1 gi|336255185|ref|YP_004598292.1| - 8.3e-10 38.2 0.7 3.7e-09 36.1 0.0 2.6 2 0 0 2 2 2 1 Part of AAA domain AAA_12 PF13087.1 gi|336255185|ref|YP_004598292.1| - 2.5e-07 30.2 0.0 0.0003 20.2 0.0 2.8 3 0 0 3 3 3 2 AAA domain UvrD_C_2 PF13538.1 gi|336255185|ref|YP_004598292.1| - 4.7e-07 29.8 0.1 0.003 17.6 0.0 3.3 3 0 0 3 3 3 2 UvrD-like helicase C-terminal domain AAA_30 PF13604.1 gi|336255185|ref|YP_004598292.1| - 0.00051 19.6 0.0 0.0012 18.4 0.0 1.6 1 0 0 1 1 1 1 AAA domain Viral_helicase1 PF01443.13 gi|336255185|ref|YP_004598292.1| - 0.0017 17.9 0.1 0.055 12.9 0.0 2.8 3 0 0 3 3 3 1 Viral (Superfamily 1) RNA helicase PDDEXK_1 PF12705.2 gi|336255186|ref|YP_004598293.1| - 8.6e-08 31.8 0.8 0.00017 21.0 0.2 2.1 1 1 1 2 2 2 2 PD-(D/E)XK nuclease superfamily CBS PF00571.23 gi|336255188|ref|YP_004598295.1| - 1.5e-30 104.7 4.7 1.5e-17 63.0 0.1 2.1 2 0 0 2 2 2 2 CBS domain HTH_29 PF13551.1 gi|336255190|ref|YP_004598297.1| - 0.11 12.6 0.0 0.23 11.6 0.0 1.6 2 0 0 2 2 2 0 Winged helix-turn helix DUF3618 PF12277.3 gi|336255190|ref|YP_004598297.1| - 0.14 12.2 2.9 3 7.9 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3618) DSBA PF01323.15 gi|336255191|ref|YP_004598298.1| - 1.7e-32 112.5 0.0 1.9e-32 112.3 0.0 1.0 1 0 0 1 1 1 1 DSBA-like thioredoxin domain Thioredoxin_4 PF13462.1 gi|336255191|ref|YP_004598298.1| - 7.4e-11 42.3 2.3 2.1e-09 37.5 0.0 2.5 1 1 2 3 3 3 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|336255191|ref|YP_004598298.1| - 0.0072 16.5 2.8 0.086 13.0 2.0 2.3 1 1 0 1 1 1 1 Thioredoxin-like domain zinc_ribbon_5 PF13719.1 gi|336255193|ref|YP_004598300.1| - 8.3e-05 22.0 1.6 0.029 13.9 0.0 2.1 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|336255193|ref|YP_004598300.1| - 0.00016 21.3 2.1 0.032 13.9 0.0 2.1 2 0 0 2 2 2 2 zinc-ribbon domain UPF0547 PF10571.4 gi|336255193|ref|YP_004598300.1| - 0.00037 20.1 5.0 0.0041 16.7 0.3 2.1 2 0 0 2 2 2 1 Uncharacterised protein family UPF0547 TFIIS_C PF01096.13 gi|336255193|ref|YP_004598300.1| - 0.0037 16.8 1.2 0.041 13.5 0.1 2.0 2 0 0 2 2 2 1 Transcription factor S-II (TFIIS) PhnA_Zn_Ribbon PF08274.7 gi|336255193|ref|YP_004598300.1| - 0.0072 16.0 6.3 0.017 14.9 1.4 2.1 2 0 0 2 2 2 1 PhnA Zinc-Ribbon DUF1610 PF07754.6 gi|336255193|ref|YP_004598300.1| - 0.0099 15.9 0.4 0.0099 15.9 0.3 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF1610) Zn_Tnp_IS1595 PF12760.2 gi|336255193|ref|YP_004598300.1| - 0.014 15.2 0.4 0.16 11.7 0.0 2.0 2 0 0 2 2 2 0 Transposase zinc-ribbon domain CpXC PF14353.1 gi|336255193|ref|YP_004598300.1| - 0.017 15.1 0.9 0.095 12.6 0.6 1.9 1 1 0 1 1 1 0 CpXC protein TF_Zn_Ribbon PF08271.7 gi|336255193|ref|YP_004598300.1| - 0.019 14.2 1.2 0.37 10.1 0.1 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding Sgf11 PF08209.6 gi|336255193|ref|YP_004598300.1| - 0.028 13.7 1.7 0.16 11.3 0.1 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) DUF4379 PF14311.1 gi|336255193|ref|YP_004598300.1| - 0.029 14.2 1.2 0.055 13.2 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4379) Zn-ribbon_8 PF09723.5 gi|336255193|ref|YP_004598300.1| - 0.029 14.3 3.7 0.47 10.4 0.2 2.0 1 1 0 2 2 2 0 Zinc ribbon domain DZR PF12773.2 gi|336255193|ref|YP_004598300.1| - 0.031 14.0 0.6 0.056 13.2 0.4 1.4 1 1 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|336255193|ref|YP_004598300.1| - 0.032 13.4 3.1 0.13 11.5 0.3 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-H2C2_2 PF13465.1 gi|336255193|ref|YP_004598300.1| - 0.047 14.0 2.1 0.78 10.1 0.1 2.1 2 0 0 2 2 2 0 Zinc-finger double domain DUF1272 PF06906.6 gi|336255193|ref|YP_004598300.1| - 0.05 13.4 0.5 2.6 7.9 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1272) Rubredoxin PF00301.15 gi|336255193|ref|YP_004598300.1| - 0.052 13.4 2.3 1.6 8.6 0.2 2.1 2 0 0 2 2 2 0 Rubredoxin zf-RING_3 PF14369.1 gi|336255193|ref|YP_004598300.1| - 0.052 13.5 0.9 5.7 7.0 0.1 2.1 2 0 0 2 2 2 0 zinc-finger zf-Mss51 PF13824.1 gi|336255193|ref|YP_004598300.1| - 0.053 13.3 1.2 0.089 12.6 0.8 1.5 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Cys_rich_CPXG PF14255.1 gi|336255193|ref|YP_004598300.1| - 0.06 13.1 0.6 0.32 10.8 0.1 2.0 2 0 0 2 2 2 0 Cysteine-rich CPXCG Opy2 PF09463.5 gi|336255193|ref|YP_004598300.1| - 0.064 13.3 1.4 2.7 8.1 0.1 2.1 2 0 0 2 2 2 0 Opy2 protein zf-IS66 PF13005.2 gi|336255193|ref|YP_004598300.1| - 0.075 13.0 1.2 2.6 8.0 0.1 2.2 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 DUF329 PF03884.9 gi|336255193|ref|YP_004598300.1| - 0.097 12.2 0.2 5.1 6.7 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF329) Elf1 PF05129.8 gi|336255193|ref|YP_004598300.1| - 0.097 12.3 1.2 0.14 11.8 0.0 1.8 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like zf-RING_4 PF14570.1 gi|336255193|ref|YP_004598300.1| - 0.1 12.1 0.5 3.7 7.2 0.0 2.1 2 0 0 2 2 2 0 RING/Ubox like zinc-binding domain DUF35_N PF12172.3 gi|336255193|ref|YP_004598300.1| - 0.11 12.4 2.3 2.6 8.0 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-C4_Topoisom PF01396.14 gi|336255193|ref|YP_004598300.1| - 0.11 12.0 1.1 5 6.7 0.1 2.1 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zinc-ribbons_6 PF07191.7 gi|336255193|ref|YP_004598300.1| - 0.12 12.1 1.5 0.63 9.8 1.1 1.9 1 1 0 1 1 1 0 zinc-ribbons Auto_anti-p27 PF06677.7 gi|336255193|ref|YP_004598300.1| - 0.13 12.0 0.8 0.59 9.9 0.0 1.9 1 1 1 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Zn_Tnp_IS1 PF03811.8 gi|336255193|ref|YP_004598300.1| - 0.15 11.5 0.7 4.2 6.9 0.0 2.1 2 0 0 2 2 2 0 InsA N-terminal domain zf-3CxxC PF13695.1 gi|336255193|ref|YP_004598300.1| - 0.18 12.0 0.4 0.43 10.8 0.1 1.7 2 0 0 2 2 2 0 Zinc-binding domain OrfB_Zn_ribbon PF07282.6 gi|336255193|ref|YP_004598300.1| - 0.23 11.1 1.4 0.45 10.2 1.0 1.5 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zf-NADH-PPase PF09297.6 gi|336255193|ref|YP_004598300.1| - 0.52 9.8 5.6 1.4 8.4 0.3 2.4 3 0 0 3 3 2 0 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|336255193|ref|YP_004598300.1| - 0.59 9.6 8.3 0.27 10.7 1.4 2.3 2 1 0 2 2 2 0 zinc-ribbon domain zf-TFIIB PF13453.1 gi|336255193|ref|YP_004598300.1| - 1.3 8.2 4.5 7.8 5.7 3.2 2.0 1 1 0 1 1 1 0 Transcription factor zinc-finger zf-C2H2 PF00096.21 gi|336255193|ref|YP_004598300.1| - 1.8 9.0 4.1 13 6.3 0.2 2.1 2 0 0 2 2 2 0 Zinc finger, C2H2 type DNA_ligase_ZBD PF03119.11 gi|336255193|ref|YP_004598300.1| - 2.2 8.0 6.3 10 5.9 1.6 2.2 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-ISL3 PF14690.1 gi|336255193|ref|YP_004598300.1| - 8.9 6.4 7.5 6.3 6.9 0.9 2.1 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Apolipoprotein PF01442.13 gi|336255195|ref|YP_004598302.1| - 0.0055 16.2 0.0 0.01 15.3 0.0 1.7 1 1 0 1 1 1 1 Apolipoprotein A1/A4/E domain Phasin_2 PF09361.5 gi|336255195|ref|YP_004598302.1| - 0.16 12.0 1.3 0.33 11.0 0.4 1.8 1 1 0 1 1 1 0 Phasin protein DUF883 PF05957.8 gi|336255195|ref|YP_004598302.1| - 0.19 12.1 6.0 1.1 9.7 1.1 2.5 1 1 0 2 2 2 0 Bacterial protein of unknown function (DUF883) ATP-synt_B PF00430.13 gi|336255195|ref|YP_004598302.1| - 0.32 10.7 4.8 0.068 12.9 0.7 1.8 2 0 0 2 2 2 0 ATP synthase B/B' CF(0) YtxH PF12732.2 gi|336255195|ref|YP_004598302.1| - 1.6 9.1 19.1 5.5e+03 -2.2 13.3 3.4 1 1 0 1 1 1 0 YtxH-like protein DUF1771 PF08590.5 gi|336255195|ref|YP_004598302.1| - 1.9 8.5 5.8 5.2 7.1 1.8 2.8 2 1 2 4 4 4 0 Domain of unknown function (DUF1771) HTH_10 PF04967.7 gi|336255196|ref|YP_004598303.1| - 6.4e-16 57.6 0.0 9.4e-16 57.1 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.11 gi|336255196|ref|YP_004598303.1| - 1.5e-08 33.7 0.0 2.9e-08 32.8 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.7 gi|336255196|ref|YP_004598303.1| - 2.6e-05 23.6 0.0 8.7e-05 21.9 0.0 1.8 2 0 0 2 2 2 1 Sigma-70, region 4 MarR_2 PF12802.2 gi|336255196|ref|YP_004598303.1| - 0.0003 20.3 0.8 0.00088 18.8 0.6 1.9 1 1 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|336255196|ref|YP_004598303.1| - 0.00034 19.9 0.0 0.00068 18.9 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|336255196|ref|YP_004598303.1| - 0.019 14.6 0.4 0.042 13.4 0.0 1.7 2 0 0 2 2 2 0 HTH domain HTH_AsnC-type PF13404.1 gi|336255196|ref|YP_004598303.1| - 0.02 14.4 0.1 0.041 13.4 0.1 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_27 PF13463.1 gi|336255196|ref|YP_004598303.1| - 0.038 14.3 0.2 0.082 13.2 0.0 1.7 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_23 PF13384.1 gi|336255196|ref|YP_004598303.1| - 0.045 13.4 0.1 0.071 12.7 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain HTH_Crp_2 PF13545.1 gi|336255196|ref|YP_004598303.1| - 0.058 13.2 0.0 0.15 11.8 0.0 1.7 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain GerE PF00196.14 gi|336255196|ref|YP_004598303.1| - 0.098 11.9 0.0 0.16 11.2 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family Peptidase_M48 PF01435.13 gi|336255198|ref|YP_004598305.1| - 2.9e-23 82.6 0.1 1.8e-22 80.0 0.0 2.0 1 1 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|336255198|ref|YP_004598305.1| - 7.2e-05 21.9 0.0 0.00013 21.1 0.0 1.5 1 0 0 1 1 1 1 BlaR1 peptidase M56 SprT-like PF10263.4 gi|336255198|ref|YP_004598305.1| - 0.005 16.4 0.0 0.0071 16.0 0.0 1.2 1 0 0 1 1 1 1 SprT-like family Peptidase_MA_2 PF13485.1 gi|336255198|ref|YP_004598305.1| - 0.12 12.3 0.0 0.31 11.0 0.0 1.7 1 0 0 1 1 1 0 Peptidase MA superfamily DUF2268 PF10026.4 gi|336255198|ref|YP_004598305.1| - 0.21 10.9 0.0 0.33 10.3 0.0 1.2 1 0 0 1 1 1 0 Predicted Zn-dependent protease (DUF2268) Rhomboid PF01694.17 gi|336255199|ref|YP_004598306.1| - 3.7e-21 75.6 17.1 3.7e-21 75.6 11.8 1.8 1 1 1 2 2 2 1 Rhomboid family DUF1751 PF08551.5 gi|336255199|ref|YP_004598306.1| - 0.0018 18.5 9.4 0.0018 18.5 0.4 2.5 2 1 1 3 3 3 2 Eukaryotic integral membrane protein (DUF1751) Ribosomal_S10 PF00338.17 gi|336255200|ref|YP_004598307.1| - 1.6e-28 98.3 0.0 1.8e-28 98.2 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e GTP_EFTU PF00009.22 gi|336255201|ref|YP_004598308.1| - 1.8e-58 197.0 0.0 2.4e-58 196.7 0.0 1.1 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.12 gi|336255201|ref|YP_004598308.1| - 8.5e-31 106.0 0.1 3.2e-30 104.1 0.0 1.9 2 0 0 2 2 2 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.20 gi|336255201|ref|YP_004598308.1| - 9.1e-17 60.9 3.3 2e-16 59.8 1.0 2.4 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|336255201|ref|YP_004598308.1| - 2.1e-07 30.8 0.0 4.2e-07 29.9 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase Miro PF08477.8 gi|336255201|ref|YP_004598308.1| - 2.7e-05 24.6 0.0 0.00048 20.6 0.0 2.8 2 1 0 2 2 2 1 Miro-like protein GTP_EFTU_D4 PF14578.1 gi|336255201|ref|YP_004598308.1| - 0.00013 21.5 0.2 0.00058 19.4 0.1 2.1 2 0 0 2 2 2 1 Elongation factor Tu domain 4 Gtr1_RagA PF04670.7 gi|336255201|ref|YP_004598308.1| - 0.00074 18.7 0.1 0.048 12.8 0.0 2.2 2 0 0 2 2 2 1 Gtr1/RagA G protein conserved region Dynamin_N PF00350.18 gi|336255201|ref|YP_004598308.1| - 0.0024 17.6 0.1 0.72 9.6 0.0 2.5 1 1 0 1 1 1 1 Dynamin family SRPRB PF09439.5 gi|336255201|ref|YP_004598308.1| - 0.0087 15.2 0.0 0.35 10.0 0.0 2.2 1 1 0 1 1 1 1 Signal recognition particle receptor beta subunit FeoB_N PF02421.13 gi|336255201|ref|YP_004598308.1| - 0.01 15.0 0.0 0.23 10.7 0.1 2.6 2 1 0 2 2 2 0 Ferrous iron transport protein B CbiA PF01656.18 gi|336255201|ref|YP_004598308.1| - 0.046 13.1 0.1 0.094 12.1 0.1 1.5 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain Septin PF00735.13 gi|336255201|ref|YP_004598308.1| - 0.081 11.9 0.0 0.17 10.8 0.0 1.4 1 0 0 1 1 1 0 Septin Homoserine_dh PF00742.14 gi|336255202|ref|YP_004598309.1| - 2.3e-50 170.7 0.2 3.6e-50 170.1 0.1 1.3 1 0 0 1 1 1 1 Homoserine dehydrogenase ELFV_dehydrog PF00208.16 gi|336255202|ref|YP_004598309.1| - 6.7e-08 32.4 0.1 1.5e-07 31.2 0.1 1.6 2 0 0 2 2 2 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NAD_binding_3 PF03447.11 gi|336255202|ref|YP_004598309.1| - 9.7e-08 32.4 0.1 2.1e-07 31.3 0.1 1.6 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain NAD_binding_10 PF13460.1 gi|336255202|ref|YP_004598309.1| - 0.0028 17.7 1.4 0.0058 16.6 0.9 1.7 1 1 0 1 1 1 1 NADH(P)-binding 3HCDH_N PF02737.13 gi|336255202|ref|YP_004598309.1| - 0.0036 16.9 0.0 0.0057 16.3 0.0 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|336255202|ref|YP_004598309.1| - 0.0041 16.3 0.0 0.0065 15.6 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|336255202|ref|YP_004598309.1| - 0.0069 16.7 0.0 0.045 14.1 0.0 2.4 3 0 0 3 3 2 1 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.11 gi|336255202|ref|YP_004598309.1| - 0.011 15.2 0.0 0.016 14.6 0.0 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.18 gi|336255202|ref|YP_004598309.1| - 0.017 14.8 0.0 0.037 13.7 0.0 1.7 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus TrkA_N PF02254.13 gi|336255202|ref|YP_004598309.1| - 0.032 14.2 0.2 0.28 11.1 0.0 2.5 3 0 0 3 3 3 0 TrkA-N domain XdhC_C PF13478.1 gi|336255202|ref|YP_004598309.1| - 0.062 13.6 0.1 0.12 12.7 0.0 1.6 1 1 0 1 1 1 0 XdhC Rossmann domain Cytomega_UL20A PF05984.7 gi|336255202|ref|YP_004598309.1| - 0.11 12.6 0.1 0.21 11.7 0.1 1.5 1 0 0 1 1 1 0 Cytomegalovirus UL20A protein ACT PF01842.20 gi|336255203|ref|YP_004598310.1| - 1.5e-06 27.5 0.7 0.00094 18.6 0.0 3.2 2 1 1 3 3 3 2 ACT domain DUF4349 PF14257.1 gi|336255203|ref|YP_004598310.1| - 0.015 14.5 0.0 0.48 9.6 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4349) Arg_repressor PF01316.16 gi|336255203|ref|YP_004598310.1| - 0.081 12.4 0.0 0.14 11.7 0.0 1.3 1 0 0 1 1 1 0 Arginine repressor, DNA binding domain Sigma70_r1_1 PF03979.9 gi|336255203|ref|YP_004598310.1| - 0.16 11.9 0.0 0.16 11.9 0.0 2.0 2 1 0 2 2 2 0 Sigma-70 factor, region 1.1 Glycos_transf_2 PF00535.21 gi|336255203|ref|YP_004598310.1| - 0.16 11.6 0.6 1 8.9 0.0 2.1 2 0 0 2 2 2 0 Glycosyl transferase family 2 NifU PF01106.12 gi|336255204|ref|YP_004598311.1| - 8.3e-08 31.8 0.0 1.2e-07 31.4 0.0 1.3 1 0 0 1 1 1 1 NifU-like domain DMRL_synthase PF00885.14 gi|336255207|ref|YP_004598314.1| - 1.7e-31 108.8 1.8 2e-31 108.6 1.2 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase Aminotran_1_2 PF00155.16 gi|336255208|ref|YP_004598315.1| - 5.4e-65 219.7 0.0 6.1e-65 219.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|336255208|ref|YP_004598315.1| - 4.9e-06 25.8 0.0 8.7e-05 21.7 0.0 2.0 2 0 0 2 2 2 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|336255208|ref|YP_004598315.1| - 1.6e-05 23.4 0.0 2.4e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.14 gi|336255208|ref|YP_004598315.1| - 0.00064 18.5 0.1 0.0018 17.0 0.0 1.7 2 0 0 2 2 2 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|336255208|ref|YP_004598315.1| - 0.0023 17.0 0.4 0.0041 16.2 0.3 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_MocR PF12897.2 gi|336255208|ref|YP_004598315.1| - 0.013 14.0 0.1 0.02 13.4 0.1 1.3 1 0 0 1 1 1 0 Alanine-glyoxylate amino-transferase DZR PF12773.2 gi|336255209|ref|YP_004598316.1| - 0.00047 19.9 22.9 3.7 7.4 4.4 4.6 2 1 1 3 3 3 1 Double zinc ribbon FYVE PF01363.16 gi|336255209|ref|YP_004598316.1| - 0.026 14.4 2.0 0.026 14.4 1.4 4.1 3 2 0 3 3 3 0 FYVE zinc finger Opiods_neuropep PF01160.13 gi|336255209|ref|YP_004598316.1| - 0.029 14.1 2.4 0.13 12.0 0.2 2.9 2 0 0 2 2 2 0 Vertebrate endogenous opioids neuropeptide Pollen_Ole_e_I PF01190.12 gi|336255209|ref|YP_004598316.1| - 0.036 13.8 0.3 0.036 13.8 0.2 2.1 2 1 0 2 2 2 0 Pollen proteins Ole e I like Prok-RING_1 PF14446.1 gi|336255209|ref|YP_004598316.1| - 0.043 13.5 1.5 0.043 13.5 1.1 5.1 5 1 0 5 5 5 0 Prokaryotic RING finger family 1 zf-C2H2_jaz PF12171.3 gi|336255209|ref|YP_004598316.1| - 0.06 13.5 0.3 0.06 13.5 0.2 3.4 4 0 0 4 4 3 0 Zinc-finger double-stranded RNA-binding zf-ribbon_3 PF13248.1 gi|336255209|ref|YP_004598316.1| - 0.066 12.4 22.8 0.3 10.3 0.9 5.3 4 2 0 4 4 4 0 zinc-ribbon domain C1_1 PF00130.17 gi|336255209|ref|YP_004598316.1| - 0.066 12.9 17.5 0.094 12.4 0.2 5.0 4 1 1 5 5 5 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Baculo_ME53 PF06061.6 gi|336255209|ref|YP_004598316.1| - 0.098 11.6 0.5 0.2 10.5 0.1 1.7 1 1 1 2 2 2 0 Baculoviridae ME53 FYVE_2 PF02318.11 gi|336255209|ref|YP_004598316.1| - 0.15 11.9 5.1 0.13 12.1 0.4 2.7 1 1 2 3 3 3 0 FYVE-type zinc finger GFA PF04828.9 gi|336255209|ref|YP_004598316.1| - 0.21 11.5 15.8 8.3 6.4 0.0 5.3 1 1 3 5 5 5 0 Glutathione-dependent formaldehyde-activating enzyme zf-MYND PF01753.13 gi|336255209|ref|YP_004598316.1| - 0.23 11.3 11.8 0.46 10.4 0.1 4.4 2 1 0 3 3 3 0 MYND finger Lar_restr_allev PF14354.1 gi|336255209|ref|YP_004598316.1| - 0.35 11.2 22.1 0.38 11.0 0.8 4.7 2 1 1 3 3 2 0 Restriction alleviation protein Lar UPF0547 PF10571.4 gi|336255209|ref|YP_004598316.1| - 0.44 10.2 0.0 0.44 10.2 0.0 5.0 6 1 0 6 6 5 0 Uncharacterised protein family UPF0547 OrfB_Zn_ribbon PF07282.6 gi|336255209|ref|YP_004598316.1| - 0.48 10.1 24.1 3.4 7.3 0.5 5.2 5 0 0 5 5 5 0 Putative transposase DNA-binding domain zf-CHY PF05495.7 gi|336255209|ref|YP_004598316.1| - 1.3 9.2 14.7 0.95 9.6 1.3 4.0 3 1 0 4 4 4 0 CHY zinc finger Zn-ribbon_8 PF09723.5 gi|336255209|ref|YP_004598316.1| - 1.5 8.8 26.3 0.63 10.0 1.1 5.7 4 1 2 6 6 6 0 Zinc ribbon domain Nudix_N_2 PF14803.1 gi|336255209|ref|YP_004598316.1| - 1.7 8.4 25.4 0.54 9.9 0.9 6.7 6 1 0 6 6 6 0 Nudix N-terminal zf-Di19 PF05605.7 gi|336255209|ref|YP_004598316.1| - 1.8 8.7 10.7 0.13 12.4 1.3 3.3 4 0 0 4 4 3 0 Drought induced 19 protein (Di19), zinc-binding A2L_zn_ribbon PF08792.5 gi|336255209|ref|YP_004598316.1| - 8.1 6.0 25.3 4 6.9 1.3 5.9 6 0 0 6 6 6 0 A2L zinc ribbon domain HypA PF01155.14 gi|336255209|ref|YP_004598316.1| - 9.4 5.9 20.5 1.2 8.8 0.3 4.3 2 2 1 3 3 3 0 Hydrogenase expression/synthesis hypA family IMPDH PF00478.20 gi|336255210|ref|YP_004598317.1| - 1.8e-116 388.8 2.8 2.7e-116 388.3 2.0 1.2 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain NMO PF03060.10 gi|336255210|ref|YP_004598317.1| - 7.8e-10 38.4 14.3 7.8e-08 31.8 9.8 2.5 1 1 0 1 1 1 1 Nitronate monooxygenase FMN_dh PF01070.13 gi|336255210|ref|YP_004598317.1| - 2.3e-06 26.7 9.1 6.6e-06 25.2 6.2 1.6 1 1 0 1 1 1 1 FMN-dependent dehydrogenase His_biosynth PF00977.16 gi|336255210|ref|YP_004598317.1| - 3.5e-06 26.4 0.6 0.00042 19.6 0.0 2.3 2 0 0 2 2 2 2 Histidine biosynthesis protein Glu_synthase PF01645.12 gi|336255210|ref|YP_004598317.1| - 0.0016 17.4 2.9 0.0016 17.4 2.0 2.0 2 0 0 2 2 2 1 Conserved region in glutamate synthase DHO_dh PF01180.16 gi|336255210|ref|YP_004598317.1| - 0.0083 15.1 0.7 0.015 14.3 0.5 1.3 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase TMP-TENI PF02581.12 gi|336255210|ref|YP_004598317.1| - 0.018 14.1 5.2 0.032 13.3 3.5 1.5 1 1 0 1 1 1 0 Thiamine monophosphate synthase/TENI PcrB PF01884.12 gi|336255210|ref|YP_004598317.1| - 0.047 12.9 4.6 0.071 12.3 0.3 2.2 2 0 0 2 2 2 0 PcrB family IGPS PF00218.16 gi|336255210|ref|YP_004598317.1| - 0.059 12.4 0.2 2.8 6.9 0.0 2.4 2 1 0 2 2 2 0 Indole-3-glycerol phosphate synthase Aldolase PF01081.14 gi|336255210|ref|YP_004598317.1| - 0.06 12.5 4.2 0.13 11.4 0.8 2.4 1 1 0 2 2 2 0 KDPG and KHG aldolase ThiG PF05690.9 gi|336255210|ref|YP_004598317.1| - 0.34 9.9 4.7 0.081 11.9 1.0 1.6 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG ATP-grasp PF02222.17 gi|336255211|ref|YP_004598318.1| - 3e-53 179.6 0.0 4.9e-53 178.9 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|336255211|ref|YP_004598318.1| - 2.1e-20 73.2 1.1 2e-19 70.0 0.4 2.2 2 0 0 2 2 2 1 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|336255211|ref|YP_004598318.1| - 9.3e-09 34.9 0.0 7.1e-08 32.0 0.0 2.1 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp_3 PF02655.9 gi|336255211|ref|YP_004598318.1| - 9.7e-09 35.2 0.0 1.4e-08 34.7 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|336255211|ref|YP_004598318.1| - 1.1e-08 34.2 0.0 9.1e-07 27.9 0.0 2.1 2 0 0 2 2 2 1 ATP-grasp in the biosynthetic pathway with Ter operon 2-Hacid_dh_C PF02826.14 gi|336255211|ref|YP_004598318.1| - 2.4e-06 26.8 0.0 4.5e-06 25.9 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RimK PF08443.6 gi|336255211|ref|YP_004598318.1| - 0.00011 21.7 0.0 0.00057 19.4 0.0 2.1 2 1 0 2 2 2 1 RimK-like ATP-grasp domain XdhC_C PF13478.1 gi|336255211|ref|YP_004598318.1| - 0.00015 22.0 0.0 0.00042 20.6 0.0 1.8 1 0 0 1 1 1 1 XdhC Rossmann domain CPSase_L_D2 PF02786.12 gi|336255211|ref|YP_004598318.1| - 0.00044 19.6 0.1 0.0007 18.9 0.1 1.4 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain 3HCDH_N PF02737.13 gi|336255211|ref|YP_004598318.1| - 0.0013 18.3 0.3 0.0033 17.0 0.0 1.9 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox PF00070.22 gi|336255211|ref|YP_004598318.1| - 0.0066 16.8 0.1 0.06 13.7 0.0 2.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase PALP PF00291.20 gi|336255211|ref|YP_004598318.1| - 0.012 14.8 0.2 0.33 10.1 0.0 2.3 2 0 0 2 2 2 0 Pyridoxal-phosphate dependent enzyme NAD_binding_10 PF13460.1 gi|336255211|ref|YP_004598318.1| - 0.013 15.5 0.3 0.032 14.2 0.2 1.7 1 0 0 1 1 1 0 NADH(P)-binding ATP-grasp_5 PF13549.1 gi|336255211|ref|YP_004598318.1| - 0.025 13.8 0.0 0.06 12.5 0.0 1.6 1 0 0 1 1 1 0 ATP-grasp domain GARS_A PF01071.14 gi|336255211|ref|YP_004598318.1| - 0.036 13.6 0.0 0.06 12.9 0.0 1.3 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain NAD_binding_2 PF03446.10 gi|336255211|ref|YP_004598318.1| - 0.065 13.0 0.0 0.22 11.3 0.0 1.9 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase 2_5_RNA_ligase2 PF13563.1 gi|336255211|ref|YP_004598318.1| - 0.16 11.6 0.9 0.5 10.0 0.1 2.4 2 2 1 3 3 3 0 2'-5' RNA ligase superfamily adh_short PF00106.20 gi|336255211|ref|YP_004598318.1| - 0.28 11.0 1.9 2.2 8.1 0.1 2.9 2 1 1 3 3 3 0 short chain dehydrogenase AIRC PF00731.15 gi|336255212|ref|YP_004598319.1| - 3.2e-49 166.0 0.0 4e-49 165.7 0.0 1.1 1 0 0 1 1 1 1 AIR carboxylase Oxidored_q4 PF00507.14 gi|336255213|ref|YP_004598320.1| - 4e-27 94.0 0.2 5.2e-27 93.6 0.2 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 TrbC PF04956.8 gi|336255213|ref|YP_004598320.1| - 0.038 14.0 3.2 0.33 10.9 0.1 2.3 2 0 0 2 2 2 0 TrbC/VIRB2 family Oxidored_q6 PF01058.17 gi|336255214|ref|YP_004598321.1| - 3.6e-21 75.1 0.1 5.1e-21 74.6 0.1 1.2 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Complex1_49kDa PF00346.14 gi|336255215|ref|YP_004598322.1| - 1.9e-68 230.4 0.1 1e-44 152.6 0.1 2.2 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.14 gi|336255215|ref|YP_004598322.1| - 4.9e-29 100.5 0.1 9.1e-29 99.7 0.0 1.5 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit TPR_12 PF13424.1 gi|336255215|ref|YP_004598322.1| - 0.11 12.5 0.1 0.52 10.2 0.0 2.1 2 0 0 2 2 2 0 Tetratricopeptide repeat NADHdh PF00146.16 gi|336255216|ref|YP_004598323.1| - 8.2e-83 278.0 6.4 1e-82 277.7 4.5 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Fer4 PF00037.22 gi|336255217|ref|YP_004598324.1| - 1.4e-12 46.6 8.9 1.6e-06 27.4 1.6 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|336255217|ref|YP_004598324.1| - 5.7e-11 42.6 10.7 8.7e-11 42.0 7.4 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|336255217|ref|YP_004598324.1| - 3e-10 39.7 8.3 4.6e-10 39.1 5.7 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|336255217|ref|YP_004598324.1| - 1.8e-09 37.2 7.2 3.1e-09 36.4 5.0 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|336255217|ref|YP_004598324.1| - 8.3e-09 36.0 4.4 7.5e-05 23.3 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.1 gi|336255217|ref|YP_004598324.1| - 1.7e-08 34.5 12.0 4.5e-08 33.2 8.4 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|336255217|ref|YP_004598324.1| - 4.4e-08 32.6 12.2 0.00034 20.3 1.1 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|336255217|ref|YP_004598324.1| - 7.3e-08 32.3 10.4 2.5e-07 30.5 7.6 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|336255217|ref|YP_004598324.1| - 2.4e-07 30.2 9.9 0.00015 21.4 0.9 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|336255217|ref|YP_004598324.1| - 8.2e-07 28.8 9.1 0.0016 18.5 1.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|336255217|ref|YP_004598324.1| - 1.1e-05 25.6 11.8 0.0046 17.2 1.2 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|336255217|ref|YP_004598324.1| - 0.00014 22.1 13.0 0.039 14.3 1.6 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|336255217|ref|YP_004598324.1| - 0.0005 20.4 15.0 0.012 16.0 2.9 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|336255217|ref|YP_004598324.1| - 0.0053 17.3 7.7 0.24 11.9 0.5 2.5 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|336255217|ref|YP_004598324.1| - 0.045 14.1 9.7 0.32 11.4 0.6 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain Oxidored_q3 PF00499.15 gi|336255218|ref|YP_004598325.1| - 1.8e-15 56.9 3.0 2.3e-15 56.6 2.1 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DUF4040 PF13244.1 gi|336255218|ref|YP_004598325.1| - 8.1e-05 22.5 10.7 0.0001 22.1 7.4 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4040) TerC PF03741.11 gi|336255218|ref|YP_004598325.1| - 0.0042 16.5 3.1 0.005 16.3 2.1 1.2 1 1 0 1 1 1 1 Integral membrane protein TerC family Bax1-I PF01027.15 gi|336255218|ref|YP_004598325.1| - 0.011 15.3 5.4 0.012 15.2 3.8 1.1 1 0 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 DUF4191 PF13829.1 gi|336255218|ref|YP_004598325.1| - 0.56 9.2 4.2 0.65 9.0 2.9 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) UPF0118 PF01594.11 gi|336255218|ref|YP_004598325.1| - 2.1 7.2 10.8 0.99 8.3 6.2 1.3 1 1 0 1 1 1 0 Domain of unknown function DUF20 Oxidored_q2 PF00420.19 gi|336255220|ref|YP_004598327.1| - 5.2e-22 77.2 8.6 5.5e-22 77.1 5.9 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L NicO PF03824.11 gi|336255220|ref|YP_004598327.1| - 0.32 10.2 7.1 0.16 11.2 3.8 1.3 1 1 0 1 1 1 0 High-affinity nickel-transport protein DUF4059 PF13268.1 gi|336255220|ref|YP_004598327.1| - 0.34 11.1 3.6 0.42 10.8 0.0 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF4059) VPEP PF07589.6 gi|336255220|ref|YP_004598327.1| - 9.9 6.2 9.6 0.39 10.6 0.3 3.0 3 0 0 3 3 3 0 PEP-CTERM motif Oxidored_q1 PF00361.15 gi|336255221|ref|YP_004598328.1| - 4.5e-74 249.1 11.1 1.2e-73 247.6 7.7 1.8 1 0 0 1 1 1 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|336255221|ref|YP_004598328.1| - 9.3e-11 41.1 0.9 2.6e-10 39.6 0.0 2.2 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NADH5_C PF06455.6 gi|336255221|ref|YP_004598328.1| - 0.0011 18.3 2.4 0.0013 18.1 0.0 2.4 2 0 0 2 2 2 1 NADH dehydrogenase subunit 5 C-terminus Oxidored_q1_C PF01010.14 gi|336255221|ref|YP_004598328.1| - 0.0018 17.8 0.0 0.0038 16.7 0.0 1.4 1 0 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I) subunit C-terminus DUF3040 PF11239.3 gi|336255221|ref|YP_004598328.1| - 2.3 8.3 0.0 2.3 8.3 0.0 6.9 8 1 0 8 8 8 0 Protein of unknown function (DUF3040) Oxidored_q1 PF00361.15 gi|336255222|ref|YP_004598329.1| - 3.8e-68 229.6 21.6 3.8e-68 229.6 15.0 1.9 2 0 0 2 2 2 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q5_N PF01059.12 gi|336255222|ref|YP_004598329.1| - 1.5e-05 24.7 0.2 1.5e-05 24.7 0.2 3.4 4 1 0 5 5 5 1 NADH-ubiquinone oxidoreductase chain 4, amino terminus Oxidored_q1 PF00361.15 gi|336255223|ref|YP_004598330.1| - 1.3e-61 208.2 13.9 1.3e-61 208.2 9.6 1.9 2 0 0 2 2 2 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|336255223|ref|YP_004598330.1| - 2.3e-05 23.8 3.4 6.5e-05 22.4 2.4 1.8 1 0 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DHH PF01368.15 gi|336255224|ref|YP_004598331.1| - 6.5e-15 55.0 0.0 1.3e-14 54.0 0.0 1.5 1 0 0 1 1 1 1 DHH family TrkA_N PF02254.13 gi|336255224|ref|YP_004598331.1| - 4.9e-14 52.3 0.0 1.4e-13 50.8 0.0 1.9 1 0 0 1 1 1 1 TrkA-N domain DHHA1 PF02272.14 gi|336255224|ref|YP_004598331.1| - 8.9e-12 44.5 0.3 2.8e-11 42.9 0.1 2.0 2 0 0 2 2 2 1 DHHA1 domain Saccharop_dh PF03435.13 gi|336255224|ref|YP_004598331.1| - 0.0027 16.7 0.0 0.0043 16.0 0.0 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase ApbA PF02558.11 gi|336255224|ref|YP_004598331.1| - 0.01 15.2 0.0 0.018 14.4 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA ThiF PF00899.16 gi|336255224|ref|YP_004598331.1| - 0.06 13.1 0.1 0.19 11.5 0.0 1.8 1 0 0 1 1 1 0 ThiF family adh_short PF00106.20 gi|336255224|ref|YP_004598331.1| - 0.17 11.8 0.1 0.17 11.8 0.0 2.6 3 0 0 3 3 3 0 short chain dehydrogenase Lar_restr_allev PF14354.1 gi|336255225|ref|YP_004598332.1| - 0.0008 19.6 0.8 0.0009 19.5 0.6 1.2 1 0 0 1 1 1 1 Restriction alleviation protein Lar Zn_Tnp_IS1595 PF12760.2 gi|336255225|ref|YP_004598332.1| - 0.0051 16.6 1.3 0.0072 16.1 0.9 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain HypA PF01155.14 gi|336255225|ref|YP_004598332.1| - 0.057 13.1 1.2 0.89 9.2 0.0 2.0 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family zf-ribbon_3 PF13248.1 gi|336255225|ref|YP_004598332.1| - 0.059 12.6 0.7 0.12 11.6 0.0 1.8 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|336255225|ref|YP_004598332.1| - 0.07 12.6 2.9 0.25 10.9 0.5 2.0 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|336255225|ref|YP_004598332.1| - 0.1 12.4 1.4 0.21 11.4 1.0 1.6 1 1 0 1 1 1 0 Double zinc ribbon PhnA_Zn_Ribbon PF08274.7 gi|336255225|ref|YP_004598332.1| - 0.11 12.3 0.7 0.29 10.9 0.5 1.7 1 1 0 1 1 1 0 PhnA Zinc-Ribbon DUF329 PF03884.9 gi|336255225|ref|YP_004598332.1| - 0.14 11.7 1.8 0.17 11.4 1.3 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF329) DUF35_N PF12172.3 gi|336255225|ref|YP_004598332.1| - 0.16 11.9 0.7 0.16 11.9 0.5 2.1 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Zn-ribbon_8 PF09723.5 gi|336255225|ref|YP_004598332.1| - 0.16 11.9 3.0 1.1 9.2 0.1 2.1 2 0 0 2 2 2 0 Zinc ribbon domain TFIIS_C PF01096.13 gi|336255225|ref|YP_004598332.1| - 0.25 10.9 4.5 20 4.9 3.1 2.2 1 1 0 1 1 1 0 Transcription factor S-II (TFIIS) UPF0547 PF10571.4 gi|336255225|ref|YP_004598332.1| - 0.3 10.8 6.6 0.66 9.7 1.1 2.2 1 1 1 2 2 2 0 Uncharacterised protein family UPF0547 zf-trcl PF13451.1 gi|336255225|ref|YP_004598332.1| - 0.59 9.7 0.1 0.59 9.7 0.1 2.1 1 1 1 2 2 2 0 Probable zinc-binding domain zf-ISL3 PF14690.1 gi|336255225|ref|YP_004598332.1| - 1 9.4 3.4 2.1 8.4 2.4 1.8 1 1 0 1 1 1 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc_ribbon_5 PF13719.1 gi|336255225|ref|YP_004598332.1| - 1 8.9 5.3 9.7 5.8 0.3 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|336255225|ref|YP_004598332.1| - 1.6 8.4 4.6 13 5.5 0.3 2.1 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1 PF03811.8 gi|336255225|ref|YP_004598332.1| - 1.9 8.0 4.2 7.8 6.0 2.9 1.9 1 1 0 1 1 1 0 InsA N-terminal domain CBS PF00571.23 gi|336255226|ref|YP_004598333.1| - 6.6e-29 99.4 3.7 3.9e-14 52.1 0.0 2.9 3 0 0 3 3 3 2 CBS domain ParBc PF02195.13 gi|336255226|ref|YP_004598333.1| - 3.8e-10 39.7 0.4 7.7e-10 38.7 0.0 1.7 2 0 0 2 2 2 1 ParB-like nuclease domain ParBc_2 PF08857.6 gi|336255226|ref|YP_004598333.1| - 0.0018 18.1 0.1 0.019 14.8 0.0 2.1 1 1 0 1 1 1 1 Putative ParB-like nuclease Dehyd-heme_bind PF09098.5 gi|336255226|ref|YP_004598333.1| - 0.0049 16.3 0.0 0.0082 15.6 0.0 1.4 1 0 0 1 1 1 1 Quinohemoprotein amine dehydrogenase A, alpha subunit, haem binding DUF1015 PF06245.6 gi|336255226|ref|YP_004598333.1| - 0.092 11.2 0.2 0.2 10.1 0.1 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF1015) AMP-binding PF00501.23 gi|336255227|ref|YP_004598334.1| - 5.5e-93 311.6 0.2 6.5e-93 311.3 0.1 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|336255227|ref|YP_004598334.1| - 5e-19 69.0 0.4 1.4e-18 67.5 0.3 1.9 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain polyprenyl_synt PF00348.12 gi|336255229|ref|YP_004598336.1| - 1.7e-41 141.7 0.0 2.1e-41 141.5 0.0 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase Peptidase_M28 PF04389.12 gi|336255230|ref|YP_004598337.1| - 3.9e-31 108.1 0.6 5.5e-31 107.6 0.4 1.2 1 0 0 1 1 1 1 Peptidase family M28 PA PF02225.17 gi|336255230|ref|YP_004598337.1| - 2.9e-10 39.7 0.0 6.1e-10 38.6 0.0 1.6 1 0 0 1 1 1 1 PA domain Peptidase_M42 PF05343.9 gi|336255230|ref|YP_004598337.1| - 5e-06 25.4 0.7 8.7e-06 24.7 0.5 1.3 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.23 gi|336255230|ref|YP_004598337.1| - 6.7e-06 25.7 0.2 9.6e-06 25.2 0.2 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 NAD_kinase PF01513.16 gi|336255231|ref|YP_004598338.1| - 5.4e-20 71.3 0.3 7.2e-20 70.9 0.2 1.1 1 0 0 1 1 1 1 ATP-NAD kinase DUF2376 PF09550.5 gi|336255231|ref|YP_004598338.1| - 0.094 12.8 1.5 0.28 11.3 1.0 1.9 1 0 0 1 1 1 0 Conserved hypothetical phage protein (DUF2376) G-alpha PF00503.15 gi|336255232|ref|YP_004598339.1| - 8 5.0 9.0 9.7 4.7 6.3 1.1 1 0 0 1 1 1 0 G-protein alpha subunit HhH-GPD PF00730.20 gi|336255233|ref|YP_004598340.1| - 6.4e-22 77.8 0.0 3.7e-21 75.4 0.0 1.9 2 0 0 2 2 2 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|336255233|ref|YP_004598340.1| - 5.1e-09 35.3 0.0 1.1e-08 34.2 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif EndIII_4Fe-2S PF10576.4 gi|336255233|ref|YP_004598340.1| - 3.5e-06 26.9 5.1 6.8e-06 26.0 3.5 1.5 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH_5 PF14520.1 gi|336255233|ref|YP_004598340.1| - 0.048 13.8 1.8 0.12 12.5 0.0 2.4 3 0 0 3 3 3 0 Helix-hairpin-helix domain GHMP_kinases_N PF00288.21 gi|336255234|ref|YP_004598341.1| - 2.5e-07 30.6 4.5 1.6e-06 28.0 3.3 2.1 1 1 1 2 2 2 1 GHMP kinases N terminal domain Phage_AlpA PF05930.7 gi|336255234|ref|YP_004598341.1| - 0.094 12.4 0.0 0.17 11.6 0.0 1.4 1 0 0 1 1 1 0 Prophage CP4-57 regulatory protein (AlpA) TarH PF02203.10 gi|336255234|ref|YP_004598341.1| - 0.23 11.2 3.4 0.56 10.0 0.5 2.1 2 0 0 2 2 2 0 Tar ligand binding domain homologue CPSase_L_D2 PF02786.12 gi|336255236|ref|YP_004598343.1| - 8.2e-93 309.5 0.0 4.3e-57 192.8 0.0 2.7 2 1 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_chain PF00289.17 gi|336255236|ref|YP_004598343.1| - 4.9e-47 158.5 0.3 1e-22 80.3 0.0 2.6 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, N-terminal domain ATP-grasp_4 PF13535.1 gi|336255236|ref|YP_004598343.1| - 2.6e-28 99.0 0.1 5e-15 55.6 0.0 2.8 2 0 0 2 2 2 2 ATP-grasp domain CPSase_L_D3 PF02787.14 gi|336255236|ref|YP_004598343.1| - 2.5e-21 75.6 0.0 6.8e-21 74.3 0.0 1.7 1 0 0 1 1 1 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ATPgrasp_Ter PF15632.1 gi|336255236|ref|YP_004598343.1| - 3.2e-19 68.8 0.0 1.7e-10 40.2 0.0 4.0 3 1 0 3 3 3 3 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp PF02222.17 gi|336255236|ref|YP_004598343.1| - 1.8e-09 37.2 0.1 0.00021 20.7 0.0 2.8 3 0 0 3 3 3 2 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|336255236|ref|YP_004598343.1| - 1.3e-08 34.4 0.0 3.9e-05 23.1 0.0 2.6 2 1 0 2 2 2 2 D-ala D-ala ligase C-terminus ATP-grasp_3 PF02655.9 gi|336255236|ref|YP_004598343.1| - 1.9e-07 31.1 0.0 0.0019 18.0 0.0 2.5 2 0 0 2 2 2 2 ATP-grasp domain RimK PF08443.6 gi|336255236|ref|YP_004598343.1| - 0.0012 18.4 0.0 0.033 13.6 0.0 2.9 3 0 0 3 3 3 1 RimK-like ATP-grasp domain GFO_IDH_MocA PF01408.17 gi|336255236|ref|YP_004598343.1| - 0.013 15.9 0.8 9.8 6.7 0.1 3.2 3 0 0 3 3 3 0 Oxidoreductase family, NAD-binding Rossmann fold VCX_VCY PF15231.1 gi|336255237|ref|YP_004598344.1| - 0.069 13.5 0.0 0.081 13.3 0.0 1.2 1 0 0 1 1 1 0 Variable charge X/Y family Methyltransf_11 PF08241.7 gi|336255239|ref|YP_004598346.1| - 3.1e-10 40.3 0.0 5.3e-10 39.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|336255239|ref|YP_004598346.1| - 1.7e-06 28.2 0.0 2.9e-06 27.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|336255239|ref|YP_004598346.1| - 3.2e-06 26.9 0.0 4.3e-06 26.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|336255239|ref|YP_004598346.1| - 1.3e-05 25.7 0.2 2.3e-05 24.9 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|336255239|ref|YP_004598346.1| - 0.00011 22.1 4.4 0.0004 20.3 3.1 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|336255239|ref|YP_004598346.1| - 0.00015 22.1 0.2 0.00037 20.9 0.1 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.1 gi|336255239|ref|YP_004598346.1| - 0.024 15.4 0.3 0.053 14.3 0.2 1.6 1 0 0 1 1 1 0 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|336255239|ref|YP_004598346.1| - 0.087 12.2 0.1 0.13 11.6 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 95 RrnaAD PF00398.15 gi|336255239|ref|YP_004598346.1| - 0.17 10.8 0.0 0.27 10.2 0.0 1.3 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Aldo_ket_red PF00248.16 gi|336255240|ref|YP_004598347.1| - 2e-27 95.7 0.0 2.5e-27 95.4 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family Amidohydro_2 PF04909.9 gi|336255240|ref|YP_004598347.1| - 0.012 15.1 0.1 0.03 13.8 0.1 1.9 1 1 0 1 1 1 0 Amidohydrolase EF-hand_10 PF14788.1 gi|336255242|ref|YP_004598349.1| - 0.011 15.3 0.5 0.57 9.8 0.1 2.2 2 0 0 2 2 2 0 EF hand Exosortase_EpsH PF09721.5 gi|336255243|ref|YP_004598350.1| - 7.5e-44 149.9 18.9 1.1e-43 149.4 13.1 1.1 1 0 0 1 1 1 1 Transmembrane exosortase (Exosortase_EpsH) Metallophos PF00149.23 gi|336255244|ref|YP_004598351.1| - 0.00015 21.2 0.1 0.0004 19.8 0.1 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Aldolase PF01081.14 gi|336255244|ref|YP_004598351.1| - 0.13 11.3 0.0 0.25 10.4 0.0 1.4 1 0 0 1 1 1 0 KDPG and KHG aldolase Amino_oxidase PF01593.19 gi|336255245|ref|YP_004598352.1| - 8.2e-42 143.8 2.8 6.6e-41 140.8 1.9 1.9 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.1 gi|336255245|ref|YP_004598352.1| - 9.8e-16 57.5 0.4 3.2e-15 55.9 0.3 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|336255245|ref|YP_004598352.1| - 2.1e-11 43.3 6.6 3.3e-06 26.2 0.1 2.5 2 1 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|336255245|ref|YP_004598352.1| - 1.1e-07 31.2 2.5 1.5e-05 24.1 1.4 2.2 2 0 0 2 2 2 1 FAD binding domain FAD_binding_2 PF00890.19 gi|336255245|ref|YP_004598352.1| - 2.3e-06 26.7 4.0 1.4e-05 24.1 1.5 2.2 2 0 0 2 2 2 1 FAD binding domain HI0933_like PF03486.9 gi|336255245|ref|YP_004598352.1| - 4.9e-06 25.2 0.0 0.00026 19.6 0.0 2.1 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_2 PF07992.9 gi|336255245|ref|YP_004598352.1| - 5.5e-06 26.4 0.3 0.00036 20.4 0.0 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|336255245|ref|YP_004598352.1| - 1.4e-05 25.2 0.1 7.6e-05 22.8 0.0 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|336255245|ref|YP_004598352.1| - 0.00021 21.6 1.5 0.0058 17.0 1.1 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|336255245|ref|YP_004598352.1| - 0.00033 19.8 0.3 0.00065 18.8 0.2 1.4 1 0 0 1 1 1 1 Thi4 family NAD_binding_7 PF13241.1 gi|336255245|ref|YP_004598352.1| - 0.0017 18.5 0.2 0.03 14.5 0.0 2.2 2 0 0 2 2 2 1 Putative NAD(P)-binding NAD_binding_9 PF13454.1 gi|336255245|ref|YP_004598352.1| - 0.0039 16.9 2.7 0.21 11.3 0.2 2.6 2 0 0 2 2 2 1 FAD-NAD(P)-binding F420_oxidored PF03807.12 gi|336255245|ref|YP_004598352.1| - 0.0045 17.3 0.5 0.0045 17.3 0.3 1.7 2 0 0 2 2 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_10 PF13460.1 gi|336255245|ref|YP_004598352.1| - 0.0063 16.5 7.9 0.051 13.5 0.3 2.3 2 0 0 2 2 2 1 NADH(P)-binding FAD_oxidored PF12831.2 gi|336255245|ref|YP_004598352.1| - 0.045 12.8 4.5 0.093 11.7 3.1 1.5 1 0 0 1 1 1 0 FAD dependent oxidoreductase Trp_halogenase PF04820.9 gi|336255245|ref|YP_004598352.1| - 0.12 10.9 1.0 0.23 10.0 0.7 1.4 1 0 0 1 1 1 0 Tryptophan halogenase FMO-like PF00743.14 gi|336255245|ref|YP_004598352.1| - 0.19 9.8 0.0 0.29 9.2 0.0 1.2 1 0 0 1 1 1 0 Flavin-binding monooxygenase-like GIDA PF01134.17 gi|336255245|ref|YP_004598352.1| - 0.2 10.4 4.2 0.064 12.1 0.8 1.6 2 0 0 2 2 2 0 Glucose inhibited division protein A YjeF_N PF03853.10 gi|336255245|ref|YP_004598352.1| - 0.31 10.6 2.1 1.7 8.2 0.1 2.3 2 0 0 2 2 2 0 YjeF-related protein N-terminus Lycopene_cycl PF05834.7 gi|336255245|ref|YP_004598352.1| - 0.52 9.1 2.6 0.88 8.4 0.2 2.1 2 0 0 2 2 2 0 Lycopene cyclase protein Gluconate_2-dh3 PF13618.1 gi|336255246|ref|YP_004598353.1| - 4.7e-40 136.7 0.1 4.7e-40 136.7 0.1 1.7 2 0 0 2 2 2 1 Gluconate 2-dehydrogenase subunit 3 TAT_signal PF10518.4 gi|336255246|ref|YP_004598353.1| - 0.084 12.9 1.1 0.18 11.8 0.7 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence GMC_oxred_C PF05199.8 gi|336255247|ref|YP_004598354.1| - 2.4e-18 66.7 0.0 4.7e-18 65.8 0.0 1.5 1 0 0 1 1 1 1 GMC oxidoreductase GMC_oxred_N PF00732.14 gi|336255247|ref|YP_004598354.1| - 1.3e-09 37.6 0.0 2e-07 30.4 0.0 2.2 2 0 0 2 2 2 2 GMC oxidoreductase DAO PF01266.19 gi|336255247|ref|YP_004598354.1| - 0.0037 16.2 0.3 0.43 9.4 0.1 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase Thi4 PF01946.12 gi|336255247|ref|YP_004598354.1| - 0.054 12.5 0.1 0.12 11.4 0.0 1.5 1 0 0 1 1 1 0 Thi4 family NAD_binding_10 PF13460.1 gi|336255247|ref|YP_004598354.1| - 0.062 13.3 0.0 0.1 12.5 0.0 1.3 1 0 0 1 1 1 0 NADH(P)-binding NAD_binding_8 PF13450.1 gi|336255247|ref|YP_004598354.1| - 0.073 13.1 0.2 0.26 11.3 0.1 2.0 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.9 gi|336255247|ref|YP_004598354.1| - 0.098 12.5 0.0 0.21 11.4 0.0 1.6 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase 2HCT PF03390.10 gi|336255249|ref|YP_004598356.1| - 0.11 10.8 2.6 0.11 10.8 1.8 1.0 1 0 0 1 1 1 0 2-hydroxycarboxylate transporter family DUF4418 PF14387.1 gi|336255249|ref|YP_004598356.1| - 0.31 10.7 2.0 0.31 10.7 1.4 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4418) ExoD PF06055.7 gi|336255249|ref|YP_004598356.1| - 0.36 9.9 6.9 0.36 9.9 4.8 1.0 1 0 0 1 1 1 0 Exopolysaccharide synthesis, ExoD DUF3953 PF13129.1 gi|336255249|ref|YP_004598356.1| - 0.48 10.0 8.6 0.74 9.4 1.4 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3953) DUF454 PF04304.8 gi|336255249|ref|YP_004598356.1| - 0.49 10.4 3.8 0.53 10.3 2.6 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF454) IncA PF04156.9 gi|336255249|ref|YP_004598356.1| - 1 8.9 12.4 1.2 8.7 8.6 1.1 1 0 0 1 1 1 0 IncA protein Lactamase_B PF00753.22 gi|336255250|ref|YP_004598357.1| - 1.2e-18 67.4 10.9 1.7e-18 66.9 7.6 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|336255250|ref|YP_004598357.1| - 0.00022 20.8 0.2 0.00034 20.2 0.1 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain DsbD PF02683.10 gi|336255251|ref|YP_004598358.1| - 3.7e-13 49.5 13.2 4.7e-13 49.2 9.1 1.1 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DsbD_2 PF13386.1 gi|336255251|ref|YP_004598358.1| - 0.0029 17.3 17.2 0.01 15.5 11.9 2.0 1 1 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region Redoxin PF08534.5 gi|336255252|ref|YP_004598359.1| - 8.5e-05 22.1 0.0 0.00011 21.7 0.0 1.2 1 0 0 1 1 1 1 Redoxin TAT_signal PF10518.4 gi|336255252|ref|YP_004598359.1| - 0.016 15.1 2.5 0.033 14.1 1.7 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Lactamase_B PF00753.22 gi|336255253|ref|YP_004598360.1| - 1.8e-27 96.2 4.3 1.8e-27 96.2 3.0 1.9 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|336255253|ref|YP_004598360.1| - 2.2e-06 27.3 1.0 7.1e-06 25.7 0.0 2.0 2 0 0 2 2 2 1 Beta-lactamase superfamily domain GatB_N PF02934.10 gi|336255255|ref|YP_004598362.1| - 4.6e-111 370.3 0.0 7.5e-111 369.6 0.0 1.3 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|336255255|ref|YP_004598362.1| - 1.8e-41 141.3 0.0 3.4e-41 140.3 0.0 1.5 1 0 0 1 1 1 1 GatB domain TAT_signal PF10518.4 gi|336255256|ref|YP_004598363.1| - 0.009 15.9 2.3 0.014 15.3 1.6 1.3 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence SDF PF00375.13 gi|336255257|ref|YP_004598364.1| - 3.2e-113 378.4 36.5 3.6e-113 378.2 25.3 1.0 1 0 0 1 1 1 1 Sodium:dicarboxylate symporter family BPD_transp_1 PF00528.17 gi|336255258|ref|YP_004598365.1| - 4e-15 55.8 10.9 5.8e-15 55.2 7.6 1.3 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component DUF2108 PF09881.4 gi|336255258|ref|YP_004598365.1| - 2 8.3 0.0 2 8.3 0.0 3.5 4 1 1 5 5 5 0 Predicted membrane protein (DUF2108) BPD_transp_1 PF00528.17 gi|336255259|ref|YP_004598366.1| - 4.8e-17 62.0 10.6 9.1e-17 61.1 7.3 1.5 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|336255260|ref|YP_004598367.1| - 4.8e-37 127.3 0.0 6.2e-37 126.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|336255260|ref|YP_004598367.1| - 8.7e-11 42.3 0.0 2.8e-06 27.4 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|336255260|ref|YP_004598367.1| - 4.1e-05 23.7 0.1 0.0012 19.0 0.1 2.4 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|336255260|ref|YP_004598367.1| - 0.00011 22.1 0.0 0.00078 19.3 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|336255260|ref|YP_004598367.1| - 0.0012 18.3 0.0 0.0023 17.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SbcCD_C PF13558.1 gi|336255260|ref|YP_004598367.1| - 0.0017 18.2 0.1 0.018 14.9 0.1 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_16 PF13191.1 gi|336255260|ref|YP_004598367.1| - 0.0019 18.1 0.0 0.0039 17.1 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain DUF258 PF03193.11 gi|336255260|ref|YP_004598367.1| - 0.0034 16.5 0.0 0.0053 15.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 Mg_chelatase PF01078.16 gi|336255260|ref|YP_004598367.1| - 0.0042 16.2 0.0 0.0068 15.5 0.0 1.3 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_30 PF13604.1 gi|336255260|ref|YP_004598367.1| - 0.03 13.9 0.1 0.092 12.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA PF00004.24 gi|336255260|ref|YP_004598367.1| - 0.048 13.8 0.0 3 8.0 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.1 gi|336255260|ref|YP_004598367.1| - 0.051 13.8 0.0 12 6.2 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|336255260|ref|YP_004598367.1| - 0.079 13.7 1.0 0.17 12.7 0.7 2.0 1 1 0 1 1 1 0 AAA domain MobB PF03205.9 gi|336255260|ref|YP_004598367.1| - 0.11 12.1 0.0 0.22 11.2 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B MMR_HSR1 PF01926.18 gi|336255260|ref|YP_004598367.1| - 0.12 12.2 0.0 0.24 11.3 0.0 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase Phosphonate-bd PF12974.2 gi|336255261|ref|YP_004598368.1| - 5.4e-47 160.2 0.0 7.7e-47 159.7 0.0 1.1 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein SBP_bac_11 PF13531.1 gi|336255261|ref|YP_004598368.1| - 0.00066 19.3 0.0 0.0011 18.6 0.0 1.4 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like PF12727.2 gi|336255261|ref|YP_004598368.1| - 0.012 14.5 0.0 0.024 13.6 0.0 1.4 1 0 0 1 1 1 0 PBP superfamily domain OpuAC PF04069.7 gi|336255261|ref|YP_004598368.1| - 0.024 14.0 0.0 0.11 11.8 0.0 1.9 1 1 0 2 2 2 0 Substrate binding domain of ABC-type glycine betaine transport system AMP-binding PF00501.23 gi|336255262|ref|YP_004598369.1| - 1.2e-82 277.5 0.0 1.5e-82 277.2 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|336255262|ref|YP_004598369.1| - 1.6e-18 67.4 0.2 3.3e-18 66.3 0.1 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain SlyX PF04102.7 gi|336255263|ref|YP_004598370.1| - 0.00011 22.5 2.7 0.00011 22.4 1.4 1.5 1 1 0 1 1 1 1 SlyX Tropomyosin PF00261.15 gi|336255263|ref|YP_004598370.1| - 0.00016 20.8 1.2 0.00016 20.8 0.8 1.9 2 0 0 2 2 2 1 Tropomyosin IFT57 PF10498.4 gi|336255263|ref|YP_004598370.1| - 0.0018 17.1 0.2 0.0019 17.0 0.1 1.1 1 0 0 1 1 1 1 Intra-flagellar transport protein 57 Lebercilin PF15619.1 gi|336255263|ref|YP_004598370.1| - 0.033 13.6 0.6 0.04 13.3 0.4 1.1 1 0 0 1 1 1 0 Ciliary protein causing Leber congenital amaurosis disease PspB PF06667.7 gi|336255263|ref|YP_004598370.1| - 0.086 12.7 0.9 0.26 11.2 0.7 1.7 1 1 0 1 1 1 0 Phage shock protein B Herpes_UL6 PF01763.11 gi|336255263|ref|YP_004598370.1| - 0.09 10.9 0.7 0.1 10.7 0.5 1.0 1 0 0 1 1 1 0 Herpesvirus UL6 like Rab5-bind PF09311.6 gi|336255263|ref|YP_004598370.1| - 0.11 12.3 5.5 0.15 11.9 3.8 1.3 1 1 0 1 1 1 0 Rabaptin-like protein DUF2730 PF10805.3 gi|336255263|ref|YP_004598370.1| - 0.12 12.1 0.6 0.18 11.5 0.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2730) Mnd1 PF03962.10 gi|336255263|ref|YP_004598370.1| - 0.15 11.7 1.1 0.16 11.5 0.7 1.1 1 0 0 1 1 1 0 Mnd1 family IFP_35_N PF07334.8 gi|336255263|ref|YP_004598370.1| - 0.17 11.8 0.3 0.29 11.1 0.2 1.5 1 1 0 1 1 1 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus bZIP_1 PF00170.16 gi|336255263|ref|YP_004598370.1| - 0.21 11.5 0.9 0.31 11.0 0.6 1.3 1 0 0 1 1 1 0 bZIP transcription factor TBPIP PF07106.8 gi|336255263|ref|YP_004598370.1| - 0.3 10.6 1.3 0.32 10.5 0.9 1.1 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) MscS_porin PF12795.2 gi|336255263|ref|YP_004598370.1| - 0.34 10.2 4.0 1.5 8.1 0.3 2.0 1 1 1 2 2 2 0 Mechanosensitive ion channel porin domain DUF4407 PF14362.1 gi|336255263|ref|YP_004598370.1| - 0.47 9.3 5.5 0.52 9.2 3.8 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) DivIVA PF05103.8 gi|336255263|ref|YP_004598370.1| - 0.56 10.2 5.3 0.75 9.8 3.7 1.1 1 0 0 1 1 1 0 DivIVA protein ATG16 PF08614.6 gi|336255263|ref|YP_004598370.1| - 0.61 9.8 4.0 0.29 10.9 0.5 1.8 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) Pox_A_type_inc PF04508.7 gi|336255263|ref|YP_004598370.1| - 0.66 9.9 4.2 0.69 9.8 0.9 2.3 2 1 0 2 2 2 0 Viral A-type inclusion protein repeat TMF_DNA_bd PF12329.3 gi|336255263|ref|YP_004598370.1| - 0.82 9.5 5.9 0.16 11.8 1.4 1.7 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding DUF2360 PF10152.4 gi|336255263|ref|YP_004598370.1| - 1 9.6 5.3 1.4 9.2 3.7 1.1 1 0 0 1 1 1 0 Predicted coiled-coil domain-containing protein (DUF2360) CENP-Q PF13094.1 gi|336255263|ref|YP_004598370.1| - 1.7 8.6 5.2 5.5 6.9 3.6 1.7 1 1 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit DUF4140 PF13600.1 gi|336255263|ref|YP_004598370.1| - 9.3 6.7 8.9 2.4 8.6 0.6 2.1 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) SMC_N PF02463.14 gi|336255264|ref|YP_004598371.1| - 6e-42 143.3 80.2 4.2e-41 140.5 55.6 2.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain SMC_hinge PF06470.8 gi|336255264|ref|YP_004598371.1| - 7.3e-31 106.6 0.1 3.2e-30 104.5 0.0 2.3 2 0 0 2 2 1 1 SMC proteins Flexible Hinge Domain AAA_13 PF13166.1 gi|336255264|ref|YP_004598371.1| - 2.1e-13 49.6 121.5 0.00023 19.7 25.6 7.4 3 2 2 5 5 5 4 AAA domain Reo_sigmaC PF04582.7 gi|336255264|ref|YP_004598371.1| - 2.4e-13 49.9 25.0 1.3e-05 24.5 1.3 6.0 2 2 4 7 7 7 6 Reovirus sigma C capsid protein AAA_21 PF13304.1 gi|336255264|ref|YP_004598371.1| - 3.1e-09 37.2 32.4 1.4e-05 25.2 3.3 4.9 2 2 0 2 2 2 2 AAA domain DUF3584 PF12128.3 gi|336255264|ref|YP_004598371.1| - 7.5e-09 33.5 140.7 1.2e-07 29.5 36.6 4.1 2 2 2 4 4 4 4 Protein of unknown function (DUF3584) IncA PF04156.9 gi|336255264|ref|YP_004598371.1| - 1.9e-07 30.8 174.2 0.001 18.7 15.8 8.7 2 2 5 7 7 7 3 IncA protein AAA_29 PF13555.1 gi|336255264|ref|YP_004598371.1| - 2.2e-06 27.1 0.7 1.4e-05 24.5 0.0 2.2 2 0 0 2 2 2 1 P-loop containing region of AAA domain NPV_P10 PF05531.7 gi|336255264|ref|YP_004598371.1| - 6.2e-05 23.1 55.6 0.011 15.9 2.0 10.5 5 2 5 11 11 9 3 Nucleopolyhedrovirus P10 protein CENP-F_leu_zip PF10473.4 gi|336255264|ref|YP_004598371.1| - 9.7e-05 22.2 180.2 0.017 14.9 16.6 9.2 2 2 6 8 8 7 4 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Spc7 PF08317.6 gi|336255264|ref|YP_004598371.1| - 0.00014 20.6 139.1 0.2 10.2 14.7 7.8 2 2 4 7 7 7 5 Spc7 kinetochore protein AAA_27 PF13514.1 gi|336255264|ref|YP_004598371.1| - 0.0002 19.2 125.7 0.00031 18.6 32.7 3.5 2 1 1 3 3 3 2 AAA domain GAS PF13851.1 gi|336255264|ref|YP_004598371.1| - 0.00029 20.1 49.0 0.0013 17.9 13.9 8.3 3 2 5 8 8 7 4 Growth-arrest specific micro-tubule binding DUF904 PF06005.7 gi|336255264|ref|YP_004598371.1| - 0.0017 18.6 5.8 0.0017 18.6 4.0 12.3 5 2 6 11 11 9 2 Protein of unknown function (DUF904) EzrA PF06160.7 gi|336255264|ref|YP_004598371.1| - 0.0018 16.5 15.7 0.0018 16.5 10.9 4.8 2 2 2 4 4 4 3 Septation ring formation regulator, EzrA Laminin_II PF06009.7 gi|336255264|ref|YP_004598371.1| - 0.0023 17.6 4.6 0.0023 17.6 3.2 8.8 4 2 6 10 10 10 2 Laminin Domain II TMPIT PF07851.8 gi|336255264|ref|YP_004598371.1| - 0.0032 16.5 4.7 0.0032 16.5 3.3 6.7 3 2 5 8 8 8 3 TMPIT-like protein APG6 PF04111.7 gi|336255264|ref|YP_004598371.1| - 0.0059 15.6 157.0 0.0069 15.4 11.8 7.1 3 2 3 7 7 7 3 Autophagy protein Apg6 WEMBL PF05701.6 gi|336255264|ref|YP_004598371.1| - 0.007 14.8 140.0 0.06 11.7 43.5 2.5 2 1 0 2 2 2 2 Weak chloroplast movement under blue light CENP-Q PF13094.1 gi|336255264|ref|YP_004598371.1| - 0.009 16.0 10.5 0.009 16.0 7.3 9.4 2 2 7 9 9 5 1 CENP-Q, a CENPA-CAD centromere complex subunit ERM PF00769.14 gi|336255264|ref|YP_004598371.1| - 0.012 15.2 166.3 0.0079 15.7 23.1 6.0 2 2 3 5 5 4 0 Ezrin/radixin/moesin family ATG16 PF08614.6 gi|336255264|ref|YP_004598371.1| - 0.023 14.5 144.0 0.077 12.8 4.5 8.9 3 2 7 10 10 10 0 Autophagy protein 16 (ATG16) Baculo_PEP_C PF04513.7 gi|336255264|ref|YP_004598371.1| - 0.028 14.2 34.5 0.53 10.0 2.8 7.2 4 2 3 7 7 7 0 Baculovirus polyhedron envelope protein, PEP, C terminus Cast PF10174.4 gi|336255264|ref|YP_004598371.1| - 0.11 10.4 165.2 0.13 10.2 19.4 6.4 3 2 1 4 4 3 0 RIM-binding protein of the cytomatrix active zone MscS_porin PF12795.2 gi|336255264|ref|YP_004598371.1| - 0.12 11.6 116.1 0.037 13.3 14.7 5.3 3 2 2 5 5 5 0 Mechanosensitive ion channel porin domain SecIII_SopE_N PF05364.9 gi|336255264|ref|YP_004598371.1| - 0.15 11.9 1.9 2.3 8.1 0.5 2.7 2 0 0 2 2 2 0 Salmonella type III secretion SopE effector N-terminus AAA_23 PF13476.1 gi|336255264|ref|YP_004598371.1| - 0.21 11.8 165.4 3.9e+03 -2.1 55.2 8.7 2 2 0 2 2 1 0 AAA domain AAA_16 PF13191.1 gi|336255264|ref|YP_004598371.1| - 0.31 11.0 0.0 0.31 11.0 0.0 6.3 3 2 1 5 5 3 0 AAA ATPase domain Myosin_tail_1 PF01576.14 gi|336255264|ref|YP_004598371.1| - 0.62 7.7 176.0 0.8 7.3 61.9 3.4 2 1 0 2 2 2 0 Myosin tail Fib_alpha PF08702.5 gi|336255264|ref|YP_004598371.1| - 0.99 9.5 76.4 0.69 10.0 4.0 7.4 4 2 3 7 7 7 0 Fibrinogen alpha/beta chain family DUF1664 PF07889.7 gi|336255264|ref|YP_004598371.1| - 1.3 8.8 86.4 0.018 14.8 3.8 9.4 4 2 6 11 11 10 0 Protein of unknown function (DUF1664) Mnd1 PF03962.10 gi|336255264|ref|YP_004598371.1| - 1.9 8.1 136.9 0.017 14.8 8.5 9.5 2 2 6 9 9 9 0 Mnd1 family Laminin_I PF06008.9 gi|336255264|ref|YP_004598371.1| - 5.5 6.2 112.2 0.19 11.0 15.1 8.3 2 2 5 7 7 7 0 Laminin Domain I Atg14 PF10186.4 gi|336255264|ref|YP_004598371.1| - 6.5 5.6 121.4 0.36 9.7 14.4 8.1 3 2 5 8 8 8 0 UV radiation resistance protein and autophagy-related subunit 14 FliD_N PF02465.13 gi|336255264|ref|YP_004598371.1| - 8 6.8 28.1 3.6 8.0 1.2 8.3 5 3 4 9 9 9 0 Flagellar hook-associated protein 2 N-terminus ScpA_ScpB PF02616.9 gi|336255265|ref|YP_004598372.1| - 2.1e-24 86.4 0.1 1.4e-15 57.5 0.0 2.5 2 1 0 2 2 2 2 ScpA/B protein Rad21_Rec8 PF04824.11 gi|336255265|ref|YP_004598372.1| - 0.063 12.4 0.0 0.13 11.5 0.0 1.4 1 0 0 1 1 1 0 Conserved region of Rad21 / Rec8 like protein DUF4131 PF13567.1 gi|336255266|ref|YP_004598373.1| - 0.008 15.5 1.3 0.013 14.9 0.9 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4131) UPF0370 PF13980.1 gi|336255266|ref|YP_004598373.1| - 0.15 11.8 0.2 0.26 11.1 0.1 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0370) DNA_RNApol_7kD PF03604.8 gi|336255266|ref|YP_004598373.1| - 0.24 10.8 1.8 16 5.0 0.3 2.3 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit DUF164 PF02591.10 gi|336255266|ref|YP_004598373.1| - 0.32 10.8 1.6 2.2 8.1 0.2 2.3 2 0 0 2 2 2 0 Putative zinc ribbon domain MCPsignal PF00015.16 gi|336255267|ref|YP_004598374.1| - 5.7e-42 143.6 58.0 8.2e-40 136.6 26.7 2.2 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain PAS_9 PF13426.1 gi|336255267|ref|YP_004598374.1| - 2.3e-14 53.6 0.0 8.9e-14 51.7 0.0 2.1 1 0 0 1 1 1 1 PAS domain PAS PF00989.19 gi|336255267|ref|YP_004598374.1| - 2.1e-13 50.0 0.0 8.6e-13 48.0 0.0 2.1 1 0 0 1 1 1 1 PAS fold PAS_4 PF08448.5 gi|336255267|ref|YP_004598374.1| - 2.5e-12 46.8 0.5 2.5e-12 46.8 0.4 2.2 2 0 0 2 2 2 1 PAS fold PAS_8 PF13188.1 gi|336255267|ref|YP_004598374.1| - 7.1e-05 22.5 0.0 0.00036 20.2 0.0 2.2 2 0 0 2 2 1 1 PAS domain Laminin_II PF06009.7 gi|336255267|ref|YP_004598374.1| - 0.0016 18.2 34.7 0.058 13.1 3.8 4.3 2 2 2 4 4 4 4 Laminin Domain II SNARE PF05739.14 gi|336255267|ref|YP_004598374.1| - 0.0043 16.7 2.8 0.0043 16.7 2.0 6.9 2 2 6 8 8 8 2 SNARE domain Sec5 PF15469.1 gi|336255267|ref|YP_004598374.1| - 0.015 15.0 15.1 0.1 12.3 7.4 2.9 1 1 1 2 2 2 0 Exocyst complex component Sec5 NPV_P10 PF05531.7 gi|336255267|ref|YP_004598374.1| - 0.023 14.9 1.9 0.023 14.9 1.3 5.5 2 2 2 5 5 5 0 Nucleopolyhedrovirus P10 protein AAA_13 PF13166.1 gi|336255267|ref|YP_004598374.1| - 0.024 13.0 31.1 0.023 13.1 12.9 2.1 1 1 1 2 2 2 0 AAA domain DUF948 PF06103.6 gi|336255267|ref|YP_004598374.1| - 0.18 11.6 34.2 0.71 9.7 3.7 5.4 2 2 3 5 5 5 0 Bacterial protein of unknown function (DUF948) Syntaxin PF00804.20 gi|336255267|ref|YP_004598374.1| - 0.25 11.5 34.1 2.3 8.4 1.0 4.3 2 1 2 4 4 4 0 Syntaxin V_ATPase_I PF01496.14 gi|336255267|ref|YP_004598374.1| - 0.27 9.0 19.5 0.43 8.3 13.5 1.3 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF883 PF05957.8 gi|336255267|ref|YP_004598374.1| - 0.3 11.5 36.3 0.054 13.9 4.9 4.7 2 1 2 4 4 4 0 Bacterial protein of unknown function (DUF883) KxDL PF10241.4 gi|336255267|ref|YP_004598374.1| - 0.52 10.2 5.3 8.9 6.2 0.0 3.7 3 2 0 3 3 3 0 Uncharacterized conserved protein Spc7 PF08317.6 gi|336255267|ref|YP_004598374.1| - 0.57 8.7 29.5 0.42 9.2 5.7 3.1 1 1 1 2 2 2 0 Spc7 kinetochore protein DUF4200 PF13863.1 gi|336255267|ref|YP_004598374.1| - 0.79 9.6 20.5 0.29 11.0 0.6 3.7 3 1 1 4 4 4 0 Domain of unknown function (DUF4200) APG17 PF04108.7 gi|336255267|ref|YP_004598374.1| - 0.82 8.4 23.4 2.2 6.9 3.0 3.3 1 1 0 2 2 2 0 Autophagy protein Apg17 Vip3A_N PF12495.3 gi|336255267|ref|YP_004598374.1| - 0.9 9.1 8.4 0.59 9.7 0.2 3.1 1 1 3 4 4 4 0 Vegetative insecticide protein 3A N terminal Phasin_2 PF09361.5 gi|336255267|ref|YP_004598374.1| - 0.9 9.5 28.5 0.12 12.4 9.4 4.1 2 1 1 4 4 4 0 Phasin protein GLE1 PF07817.8 gi|336255267|ref|YP_004598374.1| - 1.2 8.0 8.8 0.19 10.6 1.0 2.8 2 1 1 3 3 3 0 GLE1-like protein COG2 PF06148.6 gi|336255267|ref|YP_004598374.1| - 1.3 8.9 30.2 3.3 7.5 1.2 5.2 1 1 4 5 5 5 0 COG (conserved oligomeric Golgi) complex component, COG2 Reo_sigmaC PF04582.7 gi|336255267|ref|YP_004598374.1| - 1.5 7.9 35.0 1.5 7.9 6.4 3.2 2 1 2 4 4 3 0 Reovirus sigma C capsid protein Dor1 PF04124.7 gi|336255267|ref|YP_004598374.1| - 1.5 7.2 21.2 0.34 9.3 7.2 2.9 2 2 0 2 2 2 0 Dor1-like family GAS PF13851.1 gi|336255267|ref|YP_004598374.1| - 2.2 7.4 16.5 3.4 6.8 2.6 2.3 2 0 0 2 2 2 0 Growth-arrest specific micro-tubule binding Spectrin PF00435.16 gi|336255267|ref|YP_004598374.1| - 4.7 7.5 25.4 1.1 9.5 2.0 4.5 1 1 2 4 4 4 0 Spectrin repeat DUF3829 PF12889.2 gi|336255267|ref|YP_004598374.1| - 5 6.2 20.1 1.2 8.2 1.8 3.0 2 1 1 3 3 3 0 Protein of unknown function (DUF3829) DUF1664 PF07889.7 gi|336255267|ref|YP_004598374.1| - 6.1 6.6 31.7 9.7 6.0 2.2 4.5 1 1 3 5 5 5 0 Protein of unknown function (DUF1664) PNP_UDP_1 PF01048.15 gi|336255268|ref|YP_004598375.1| - 7.4e-45 152.7 0.2 8.5e-45 152.5 0.2 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily MatE PF01554.13 gi|336255269|ref|YP_004598376.1| - 1.7e-56 190.3 28.5 7.6e-32 110.1 5.9 2.6 2 0 0 2 2 2 2 MatE Polysacc_synt_C PF14667.1 gi|336255269|ref|YP_004598376.1| - 4.2e-10 39.6 31.6 1.3e-08 34.7 10.0 4.5 3 2 1 4 4 4 2 Polysaccharide biosynthesis C-terminal domain MVIN PF03023.9 gi|336255269|ref|YP_004598376.1| - 2.4e-06 26.2 7.9 2.4e-06 26.2 5.5 2.4 1 1 1 2 2 2 1 MviN-like protein DUF4191 PF13829.1 gi|336255269|ref|YP_004598376.1| - 3.9 6.5 5.3 0.95 8.5 0.8 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4191) Hydrolase PF00702.21 gi|336255270|ref|YP_004598377.1| - 6.7e-38 131.2 1.8 6.7e-38 131.2 1.2 2.0 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase E1-E2_ATPase PF00122.15 gi|336255270|ref|YP_004598377.1| - 4.6e-36 123.9 4.9 8.4e-36 123.1 3.4 1.4 1 0 0 1 1 1 1 E1-E2 ATPase HAD PF12710.2 gi|336255270|ref|YP_004598377.1| - 2.7e-15 57.0 0.3 1.7e-14 54.3 0.0 2.3 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|336255270|ref|YP_004598377.1| - 9.4e-08 32.0 0.0 4.9e-07 29.7 0.0 2.3 3 0 0 3 3 3 1 Heavy-metal-associated domain Rad50_zn_hook PF04423.9 gi|336255270|ref|YP_004598377.1| - 0.023 14.1 0.7 0.041 13.3 0.5 1.3 1 0 0 1 1 1 0 Rad50 zinc hook motif Hydrolase_3 PF08282.7 gi|336255270|ref|YP_004598377.1| - 0.036 13.6 0.0 0.18 11.3 0.1 1.9 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase Pribosyltran PF00156.22 gi|336255271|ref|YP_004598378.1| - 6.6e-19 67.8 0.0 9.7e-19 67.3 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|336255271|ref|YP_004598378.1| - 0.0024 17.1 0.0 0.0032 16.6 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Trypsin_2 PF13365.1 gi|336255272|ref|YP_004598379.1| - 0.0016 18.4 0.2 0.0046 16.9 0.1 1.8 1 0 0 1 1 1 1 Trypsin-like peptidase domain Trypsin PF00089.21 gi|336255272|ref|YP_004598379.1| - 0.018 14.5 0.0 0.031 13.8 0.0 1.3 1 0 0 1 1 1 0 Trypsin Peptidase_S32 PF05579.8 gi|336255272|ref|YP_004598379.1| - 0.019 13.9 0.1 0.043 12.7 0.1 1.5 2 0 0 2 2 2 0 Equine arteritis virus serine endopeptidase S32 FctA PF12892.2 gi|336255272|ref|YP_004598379.1| - 0.15 12.8 1.7 0.22 12.3 0.1 2.1 2 0 0 2 2 2 0 T surface-antigen of pili ThiC PF01964.13 gi|336255273|ref|YP_004598380.1| - 1.4e-195 649.7 0.0 1.6e-195 649.5 0.0 1.0 1 0 0 1 1 1 1 ThiC family zinc_ribbon_2 PF13240.1 gi|336255273|ref|YP_004598380.1| - 0.029 13.8 0.2 0.054 12.9 0.1 1.5 1 0 0 1 1 1 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|336255273|ref|YP_004598380.1| - 0.056 12.6 0.3 0.11 11.6 0.2 1.5 1 0 0 1 1 1 0 zinc-ribbon domain HTH_10 PF04967.7 gi|336255274|ref|YP_004598381.1| - 6.2e-16 57.7 0.5 1.1e-15 56.9 0.3 1.4 1 0 0 1 1 1 1 HTH DNA binding domain Imm5 PF14423.1 gi|336255274|ref|YP_004598381.1| - 0.0083 15.7 0.0 0.014 15.0 0.0 1.3 1 0 0 1 1 1 1 Immunity protein Imm5 MarR_2 PF12802.2 gi|336255274|ref|YP_004598381.1| - 0.066 12.8 0.8 0.3 10.7 0.2 2.2 2 0 0 2 2 2 0 MarR family HTH_38 PF13936.1 gi|336255274|ref|YP_004598381.1| - 0.084 12.4 0.5 0.24 11.0 0.3 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|336255274|ref|YP_004598381.1| - 0.64 9.3 3.0 0.53 9.6 0.4 2.2 2 0 0 2 2 2 0 Sigma-70, region 4 Abi PF02517.11 gi|336255275|ref|YP_004598382.1| - 3e-11 43.2 12.7 8.9e-11 41.7 8.8 2.0 1 1 0 1 1 1 1 CAAX protease self-immunity AMO PF02461.11 gi|336255275|ref|YP_004598382.1| - 0.0028 17.4 1.6 0.0058 16.3 1.1 1.6 1 0 0 1 1 1 1 Ammonia monooxygenase PhzC-PhzF PF02567.11 gi|336255276|ref|YP_004598383.1| - 1.2e-69 234.7 0.0 1.3e-69 234.5 0.0 1.0 1 0 0 1 1 1 1 Phenazine biosynthesis-like protein Pro_racemase PF05544.6 gi|336255276|ref|YP_004598383.1| - 0.00041 19.3 0.0 0.00061 18.7 0.0 1.2 1 0 0 1 1 1 1 Proline racemase PPDK_N PF01326.14 gi|336255277|ref|YP_004598384.1| - 2.8e-108 361.8 3.8 2.8e-108 361.8 2.6 1.7 1 1 1 2 2 2 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.13 gi|336255277|ref|YP_004598384.1| - 3.1e-80 269.2 0.1 4.9e-80 268.5 0.1 1.2 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.18 gi|336255277|ref|YP_004598384.1| - 8.2e-28 95.7 1.5 2.7e-27 94.1 1.0 2.0 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain Glyoxalase_2 PF12681.2 gi|336255278|ref|YP_004598385.1| - 4e-17 62.7 2.5 1.9e-07 31.6 0.4 2.3 2 0 0 2 2 2 2 Glyoxalase-like domain Glyoxalase PF00903.20 gi|336255278|ref|YP_004598385.1| - 3.8e-16 59.2 0.4 2.9e-08 33.7 0.0 2.4 2 0 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.1 gi|336255278|ref|YP_004598385.1| - 0.0042 17.0 0.4 1.7 8.7 0.0 3.2 2 2 0 2 2 2 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.1 gi|336255278|ref|YP_004598385.1| - 0.005 16.7 7.3 1.2 9.0 0.1 3.4 2 2 1 3 3 3 3 Glyoxalase-like domain CppA_N PF14506.1 gi|336255278|ref|YP_004598385.1| - 0.11 12.1 0.0 1.8 8.2 0.0 2.1 2 0 0 2 2 2 0 CppA N-terminal Glyco_tranf_2_3 PF13641.1 gi|336255279|ref|YP_004598386.1| - 4.5e-31 108.4 1.7 8.4e-31 107.5 1.1 1.4 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.21 gi|336255279|ref|YP_004598386.1| - 1.1e-17 64.2 0.0 1.5e-17 63.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.1 gi|336255279|ref|YP_004598386.1| - 2.2e-14 53.6 1.4 4.6e-14 52.5 1.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.1 gi|336255279|ref|YP_004598386.1| - 8.9e-13 47.8 0.0 1.4e-12 47.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.4 gi|336255279|ref|YP_004598386.1| - 0.0013 17.9 0.0 0.19 10.7 0.0 2.1 2 0 0 2 2 2 2 Glycosyltransferase like family 2 Pyridoxal_deC PF00282.14 gi|336255280|ref|YP_004598387.1| - 3.1e-28 98.2 0.0 5.9e-28 97.3 0.0 1.4 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.14 gi|336255280|ref|YP_004598387.1| - 4.2e-12 45.4 0.0 5.4e-12 45.1 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|336255280|ref|YP_004598387.1| - 0.00018 20.7 0.0 0.00025 20.2 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|336255280|ref|YP_004598387.1| - 0.0044 16.1 0.2 0.0063 15.6 0.1 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family SHMT PF00464.14 gi|336255280|ref|YP_004598387.1| - 0.0066 14.8 0.0 0.013 13.9 0.0 1.4 1 1 0 1 1 1 1 Serine hydroxymethyltransferase SLA_LP_auto_ag PF05889.8 gi|336255280|ref|YP_004598387.1| - 0.2 10.0 0.0 0.29 9.5 0.0 1.1 1 0 0 1 1 1 0 Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) CoA_binding_3 PF13727.1 gi|336255281|ref|YP_004598388.1| - 2.3 7.9 5.4 1.7 8.4 2.9 1.4 1 1 0 1 1 1 0 CoA-binding domain tRNA-synt_1g PF09334.6 gi|336255282|ref|YP_004598389.1| - 1.5e-139 464.9 0.0 1.9e-139 464.6 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA_bind PF01588.15 gi|336255282|ref|YP_004598389.1| - 6.5e-21 73.9 0.1 1.1e-20 73.2 0.0 1.4 1 0 0 1 1 1 1 Putative tRNA binding domain tRNA-synt_1 PF00133.17 gi|336255282|ref|YP_004598389.1| - 7e-15 54.0 0.3 1.5e-08 33.1 0.2 3.1 2 1 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1e PF01406.14 gi|336255282|ref|YP_004598389.1| - 1.1e-09 37.8 0.0 9.2e-07 28.2 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain Anticodon_1 PF08264.8 gi|336255282|ref|YP_004598389.1| - 7e-07 29.1 0.0 1.3e-06 28.2 0.0 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1d PF00750.14 gi|336255282|ref|YP_004598389.1| - 0.0016 17.3 1.4 0.73 8.5 0.1 2.3 1 1 0 2 2 2 2 tRNA synthetases class I (R) tRNA-synt_1f PF01921.13 gi|336255282|ref|YP_004598389.1| - 0.0017 17.1 0.1 0.26 9.9 0.0 3.0 3 0 0 3 3 3 1 tRNA synthetases class I (K) PRP3 PF08572.5 gi|336255282|ref|YP_004598389.1| - 0.053 12.8 0.5 0.11 11.8 0.3 1.4 1 0 0 1 1 1 0 pre-mRNA processing factor 3 (PRP3) DUF2423 PF10338.4 gi|336255282|ref|YP_004598389.1| - 0.11 12.4 0.3 0.23 11.4 0.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2423) Beta-lactamase PF00144.19 gi|336255283|ref|YP_004598390.1| - 3.7e-64 216.8 0.9 6.5e-64 216.0 0.6 1.3 1 0 0 1 1 1 1 Beta-lactamase Chloroa_b-bind PF00504.16 gi|336255283|ref|YP_004598390.1| - 0.082 13.1 1.7 7.2 6.8 0.1 3.0 2 1 1 3 3 3 0 Chlorophyll A-B binding protein FtsX PF02687.16 gi|336255283|ref|YP_004598390.1| - 0.26 11.0 2.6 0.56 9.9 1.8 1.5 1 0 0 1 1 1 0 FtsX-like permease family GYD PF08734.6 gi|336255284|ref|YP_004598391.1| - 2.3e-07 30.4 0.0 2.8e-07 30.1 0.0 1.3 1 1 0 1 1 1 1 GYD domain PK PF00224.16 gi|336255285|ref|YP_004598392.1| - 5.2e-119 396.9 3.9 7.3e-119 396.4 2.7 1.2 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.11 gi|336255285|ref|YP_004598392.1| - 7e-32 109.4 1.5 1.4e-31 108.4 1.0 1.5 1 0 0 1 1 1 1 Pyruvate kinase, alpha/beta domain PEP-utilizers PF00391.18 gi|336255285|ref|YP_004598392.1| - 1.2e-10 40.8 1.8 3.6e-10 39.2 0.1 2.8 3 0 0 3 3 3 1 PEP-utilising enzyme, mobile domain HpcH_HpaI PF03328.9 gi|336255285|ref|YP_004598392.1| - 0.00044 19.1 1.8 0.00044 19.1 1.3 2.1 1 1 1 2 2 2 1 HpcH/HpaI aldolase/citrate lyase family ATP_bind_4 PF01902.12 gi|336255287|ref|YP_004598394.1| - 6e-59 199.0 0.0 1.6e-58 197.6 0.0 1.6 1 1 0 1 1 1 1 ATP-binding region Gly-zipper_OmpA PF13436.1 gi|336255287|ref|YP_004598394.1| - 0.11 12.1 0.9 0.17 11.5 0.1 1.6 2 0 0 2 2 2 0 Glycine-zipper containing OmpA-like membrane domain DUF373 PF04123.8 gi|336255288|ref|YP_004598395.1| - 8.9e-108 360.3 13.3 1.1e-107 360.0 9.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF373) Trypan_PARP PF05887.6 gi|336255288|ref|YP_004598395.1| - 0.028 14.2 7.5 0.054 13.3 5.2 1.5 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) Peptidase_S49 PF01343.13 gi|336255289|ref|YP_004598396.1| - 4.4e-40 136.9 0.0 1.1e-39 135.6 0.0 1.7 2 0 0 2 2 2 1 Peptidase family S49 SDH_sah PF01972.11 gi|336255289|ref|YP_004598396.1| - 0.023 13.4 0.0 0.034 12.9 0.0 1.2 1 0 0 1 1 1 0 Serine dehydrogenase proteinase CLP_protease PF00574.18 gi|336255289|ref|YP_004598396.1| - 0.037 13.6 0.0 0.5 9.9 0.0 2.1 2 0 0 2 2 2 0 Clp protease AATF-Che1 PF13339.1 gi|336255290|ref|YP_004598397.1| - 0.35 11.0 42.1 0.14 12.2 6.8 3.5 1 1 2 3 3 3 0 Apoptosis antagonizing transcription factor Tubulin PF00091.20 gi|336255291|ref|YP_004598398.1| - 5.2e-22 78.7 0.5 3.1e-21 76.2 0.2 2.2 2 1 0 2 2 2 1 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.1 gi|336255291|ref|YP_004598398.1| - 2.2e-05 23.5 0.7 6e-05 22.1 0.0 2.0 2 0 0 2 2 2 1 Tubulin like GFO_IDH_MocA PF01408.17 gi|336255292|ref|YP_004598399.1| - 1.5e-17 64.2 0.0 2.5e-17 63.4 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|336255292|ref|YP_004598399.1| - 3.4e-12 46.1 0.2 1e-11 44.6 0.1 1.9 1 1 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain ox_reductase_C PF08635.5 gi|336255292|ref|YP_004598399.1| - 0.1 12.0 0.0 0.28 10.6 0.0 1.7 1 1 0 1 1 1 0 Putative oxidoreductase C terminal Usp PF00582.21 gi|336255294|ref|YP_004598401.1| - 6.1e-31 107.4 2.0 6.1e-31 107.4 1.4 1.9 2 0 0 2 2 2 1 Universal stress protein family TPR_14 PF13428.1 gi|336255294|ref|YP_004598401.1| - 0.11 13.2 0.4 0.29 11.9 0.3 1.7 1 0 0 1 1 1 0 Tetratricopeptide repeat Zn-ribbon_8 PF09723.5 gi|336255295|ref|YP_004598402.1| - 2.7e-06 27.2 0.9 3.1e-06 27.0 0.6 1.1 1 0 0 1 1 1 1 Zinc ribbon domain HypA PF01155.14 gi|336255295|ref|YP_004598402.1| - 0.00052 19.6 0.1 0.00059 19.5 0.1 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family zf-dskA_traR PF01258.12 gi|336255295|ref|YP_004598402.1| - 0.0023 17.6 1.7 0.035 13.8 0.1 2.1 2 0 0 2 2 2 1 Prokaryotic dksA/traR C4-type zinc finger zf-C3HC4_3 PF13920.1 gi|336255295|ref|YP_004598402.1| - 0.026 14.2 0.3 0.038 13.6 0.2 1.3 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-LITAF-like PF10601.4 gi|336255295|ref|YP_004598402.1| - 0.027 14.3 0.5 6.2 6.7 0.1 2.1 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain Prok-RING_4 PF14447.1 gi|336255295|ref|YP_004598402.1| - 0.031 13.8 3.7 0.21 11.1 0.2 2.1 2 0 0 2 2 2 0 Prokaryotic RING finger family 4 zf-Di19 PF05605.7 gi|336255295|ref|YP_004598402.1| - 0.031 14.3 0.6 1.8 8.7 0.0 2.1 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding DNA_ligase_ZBD PF03119.11 gi|336255295|ref|YP_004598402.1| - 0.036 13.7 3.6 3.1 7.5 0.4 2.1 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain UPF0547 PF10571.4 gi|336255295|ref|YP_004598402.1| - 0.04 13.6 2.6 0.07 12.8 1.8 1.4 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 Zn_Tnp_IS1595 PF12760.2 gi|336255295|ref|YP_004598402.1| - 0.042 13.6 2.5 2.2 8.1 0.2 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Lar_restr_allev PF14354.1 gi|336255295|ref|YP_004598402.1| - 0.042 14.1 2.9 1.5 9.1 0.7 2.1 1 1 1 2 2 2 0 Restriction alleviation protein Lar DZR PF12773.2 gi|336255295|ref|YP_004598402.1| - 0.05 13.4 1.0 0.084 12.7 0.7 1.4 1 1 0 1 1 1 0 Double zinc ribbon zf-RING_3 PF14369.1 gi|336255295|ref|YP_004598402.1| - 0.064 13.2 1.1 0.12 12.4 0.8 1.5 1 1 0 1 1 1 0 zinc-finger zinc_ribbon_2 PF13240.1 gi|336255295|ref|YP_004598402.1| - 0.093 12.2 1.4 0.33 10.4 1.0 1.8 1 1 0 1 1 1 0 zinc-ribbon domain zf-ISL3 PF14690.1 gi|336255295|ref|YP_004598402.1| - 0.096 12.7 1.4 4.1 7.5 0.3 2.1 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 RNHCP PF12647.2 gi|336255295|ref|YP_004598402.1| - 0.12 12.2 0.1 0.15 11.9 0.1 1.2 1 0 0 1 1 1 0 RNHCP domain zf-H2C2_2 PF13465.1 gi|336255295|ref|YP_004598402.1| - 0.16 12.3 1.0 5.9 7.3 0.0 2.2 2 0 0 2 2 2 0 Zinc-finger double domain Zn_Tnp_IS1 PF03811.8 gi|336255295|ref|YP_004598402.1| - 0.16 11.4 4.8 2.4 7.7 0.1 2.1 2 0 0 2 2 2 0 InsA N-terminal domain Nudix_N_2 PF14803.1 gi|336255295|ref|YP_004598402.1| - 0.16 11.6 1.7 7 6.4 0.1 2.2 2 0 0 2 2 2 0 Nudix N-terminal zinc-ribbons_6 PF07191.7 gi|336255295|ref|YP_004598402.1| - 0.17 11.6 0.7 0.53 10.1 0.5 1.7 1 1 0 1 1 1 0 zinc-ribbons DUF329 PF03884.9 gi|336255295|ref|YP_004598402.1| - 0.24 11.0 1.5 7.7 6.1 1.5 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF329) TerY-C PF15616.1 gi|336255295|ref|YP_004598402.1| - 0.3 10.9 1.6 6.9 6.6 0.3 2.0 1 1 1 2 2 2 0 TerY-C metal binding domain zf-ribbon_3 PF13248.1 gi|336255295|ref|YP_004598402.1| - 0.52 9.6 4.3 1.7 7.9 0.4 2.1 1 1 1 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|336255295|ref|YP_004598402.1| - 0.88 8.9 3.8 4.3 6.7 2.7 1.9 1 1 0 1 1 1 0 TFIIB zinc-binding Rubredoxin PF00301.15 gi|336255295|ref|YP_004598402.1| - 2.3 8.1 4.4 4.3 7.2 0.2 2.1 1 1 0 1 1 1 0 Rubredoxin Glyoxalase_2 PF12681.2 gi|336255296|ref|YP_004598403.1| - 3.2e-19 69.5 0.3 3.6e-19 69.3 0.2 1.0 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.20 gi|336255296|ref|YP_004598403.1| - 2.1e-16 60.0 0.6 2.4e-16 59.8 0.4 1.0 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.1 gi|336255296|ref|YP_004598403.1| - 3.3e-16 59.2 0.3 4.4e-10 39.5 0.1 1.9 1 1 1 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.1 gi|336255296|ref|YP_004598403.1| - 6.6e-06 26.1 0.7 0.035 14.0 0.2 2.1 2 0 0 2 2 2 2 Glyoxalase-like domain Usp PF00582.21 gi|336255297|ref|YP_004598404.1| - 4.4e-17 62.5 1.2 5.7e-17 62.2 0.8 1.2 1 0 0 1 1 1 1 Universal stress protein family adh_short PF00106.20 gi|336255298|ref|YP_004598405.1| - 4.6e-25 88.4 1.1 5.5e-25 88.2 0.8 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|336255298|ref|YP_004598405.1| - 3.2e-12 46.7 0.0 2.9e-11 43.6 0.0 1.9 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|336255298|ref|YP_004598405.1| - 3.7e-10 39.7 0.4 5.1e-10 39.3 0.3 1.2 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.1 gi|336255298|ref|YP_004598405.1| - 0.02 14.9 0.3 0.032 14.2 0.2 1.4 1 1 0 1 1 1 0 NADH(P)-binding Epimerase PF01370.16 gi|336255298|ref|YP_004598405.1| - 0.02 14.3 0.1 0.029 13.8 0.1 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family THF_DHG_CYH_C PF02882.14 gi|336255298|ref|YP_004598405.1| - 0.12 11.3 0.3 0.22 10.5 0.0 1.5 2 0 0 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Polysacc_synt_2 PF02719.10 gi|336255298|ref|YP_004598405.1| - 0.14 11.0 0.0 0.17 10.7 0.0 1.2 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein HTH_10 PF04967.7 gi|336255299|ref|YP_004598406.1| - 3.8e-13 48.7 0.0 7.5e-13 47.8 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain HTH_3 PF01381.17 gi|336255299|ref|YP_004598406.1| - 0.013 15.3 0.0 0.023 14.5 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix MarR_2 PF12802.2 gi|336255299|ref|YP_004598406.1| - 0.029 14.0 0.0 0.053 13.2 0.0 1.4 1 0 0 1 1 1 0 MarR family TetR_N PF00440.18 gi|336255299|ref|YP_004598406.1| - 0.051 13.2 0.0 0.09 12.4 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_24 PF13412.1 gi|336255299|ref|YP_004598406.1| - 0.066 12.6 0.0 0.13 11.6 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF35_N PF12172.3 gi|336255300|ref|YP_004598407.1| - 0.077 12.9 0.5 0.077 12.9 0.4 1.9 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-CSL PF05207.8 gi|336255300|ref|YP_004598407.1| - 0.14 11.6 0.7 12 5.4 0.1 2.1 2 0 0 2 2 2 0 CSL zinc finger DAO PF01266.19 gi|336255301|ref|YP_004598408.1| - 9.3e-63 212.2 8.7 1.1e-62 212.0 6.1 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|336255301|ref|YP_004598408.1| - 3.2e-11 42.8 0.3 5e-11 42.2 0.2 1.3 1 0 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.2 gi|336255301|ref|YP_004598408.1| - 2.6e-08 33.3 9.3 8.4e-08 31.7 6.5 1.7 1 1 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|336255301|ref|YP_004598408.1| - 2.1e-05 23.5 7.6 3.2e-05 22.9 5.3 1.3 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.9 gi|336255301|ref|YP_004598408.1| - 0.00018 21.4 0.8 0.0014 18.5 0.2 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|336255301|ref|YP_004598408.1| - 0.0021 18.1 0.2 0.52 10.3 0.1 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|336255301|ref|YP_004598408.1| - 0.0021 17.7 0.9 0.0039 16.8 0.1 1.8 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_8 PF13450.1 gi|336255301|ref|YP_004598408.1| - 0.0026 17.7 1.6 0.0083 16.1 1.1 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.12 gi|336255301|ref|YP_004598408.1| - 0.003 16.7 2.8 0.0047 16.0 0.2 2.2 2 1 0 2 2 2 1 Thi4 family HI0933_like PF03486.9 gi|336255301|ref|YP_004598408.1| - 0.012 14.1 2.1 0.15 10.5 0.9 2.0 2 0 0 2 2 2 0 HI0933-like protein ApbA PF02558.11 gi|336255301|ref|YP_004598408.1| - 0.049 13.0 0.2 0.086 12.2 0.2 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Pyr_redox PF00070.22 gi|336255301|ref|YP_004598408.1| - 0.058 13.7 0.4 0.23 11.8 0.4 1.9 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|336255301|ref|YP_004598408.1| - 0.2 10.4 0.5 0.36 9.6 0.3 1.4 1 0 0 1 1 1 0 Glucose inhibited division protein A Lycopene_cycl PF05834.7 gi|336255301|ref|YP_004598408.1| - 0.23 10.3 4.3 1.5 7.6 0.6 2.2 2 0 0 2 2 2 0 Lycopene cyclase protein Lycopene_cycl PF05834.7 gi|336255302|ref|YP_004598409.1| - 1.6e-10 40.4 0.0 1.8e-09 37.0 0.0 2.0 2 0 0 2 2 2 1 Lycopene cyclase protein DAO PF01266.19 gi|336255302|ref|YP_004598409.1| - 9.1e-10 37.9 0.0 0.00011 21.1 0.0 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|336255302|ref|YP_004598409.1| - 7.2e-08 31.8 0.0 5e-06 25.8 0.0 2.6 1 1 0 1 1 1 1 FAD binding domain Trp_halogenase PF04820.9 gi|336255302|ref|YP_004598409.1| - 2.6e-07 29.6 0.0 0.0041 15.7 0.0 2.6 3 0 0 3 3 3 2 Tryptophan halogenase Pyr_redox_2 PF07992.9 gi|336255302|ref|YP_004598409.1| - 4.4e-07 29.9 0.0 9.6e-07 28.8 0.0 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|336255302|ref|YP_004598409.1| - 3.2e-05 23.1 0.0 0.00021 20.4 0.0 2.0 2 0 0 2 2 2 1 Thi4 family FAD_binding_2 PF00890.19 gi|336255302|ref|YP_004598409.1| - 7.7e-05 21.7 0.0 0.00039 19.3 0.0 1.8 1 1 1 2 2 2 1 FAD binding domain FAD_oxidored PF12831.2 gi|336255302|ref|YP_004598409.1| - 0.00011 21.4 2.8 0.0013 17.9 2.0 2.2 1 1 0 1 1 1 1 FAD dependent oxidoreductase GIDA PF01134.17 gi|336255302|ref|YP_004598409.1| - 0.00036 19.5 0.0 0.21 10.4 0.0 2.3 2 0 0 2 2 2 2 Glucose inhibited division protein A HI0933_like PF03486.9 gi|336255302|ref|YP_004598409.1| - 0.00044 18.8 0.0 0.0017 16.8 0.0 1.8 2 0 0 2 2 2 1 HI0933-like protein NAD_binding_8 PF13450.1 gi|336255302|ref|YP_004598409.1| - 0.0012 18.8 0.0 0.0042 17.0 0.0 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain RIC1 PF07064.8 gi|336255302|ref|YP_004598409.1| - 0.11 11.8 0.0 0.19 11.1 0.0 1.2 1 0 0 1 1 1 0 RIC1 TrkA_N PF02254.13 gi|336255302|ref|YP_004598409.1| - 0.12 12.4 0.0 0.24 11.3 0.0 1.5 1 0 0 1 1 1 0 TrkA-N domain CPSase_L_chain PF00289.17 gi|336255302|ref|YP_004598409.1| - 0.12 12.4 0.0 0.24 11.5 0.0 1.5 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, N-terminal domain NAD_binding_10 PF13460.1 gi|336255302|ref|YP_004598409.1| - 0.13 12.2 0.0 0.23 11.4 0.0 1.3 1 0 0 1 1 1 0 NADH(P)-binding MarR_2 PF12802.2 gi|336255303|ref|YP_004598410.1| - 7.3e-11 41.5 0.6 1e-09 37.8 0.1 2.7 3 0 0 3 3 2 1 MarR family HTH_24 PF13412.1 gi|336255303|ref|YP_004598410.1| - 1.5e-10 40.2 0.0 2.4e-10 39.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|336255303|ref|YP_004598410.1| - 5.1e-08 32.5 0.0 1.4e-07 31.1 0.0 1.7 2 0 0 2 2 1 1 MarR family HTH_27 PF13463.1 gi|336255303|ref|YP_004598410.1| - 7.5e-08 32.5 0.1 2.2e-07 31.0 0.0 1.8 2 0 0 2 2 1 1 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|336255303|ref|YP_004598410.1| - 6.7e-06 25.8 0.0 1.5e-05 24.7 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|336255303|ref|YP_004598410.1| - 2e-05 24.1 0.0 3.2e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_Crp_2 PF13545.1 gi|336255303|ref|YP_004598410.1| - 3e-05 23.7 0.0 7.2e-05 22.4 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_IclR PF09339.5 gi|336255303|ref|YP_004598410.1| - 3.1e-05 23.4 0.0 6.3e-05 22.4 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_45 PF14947.1 gi|336255303|ref|YP_004598410.1| - 4.4e-05 23.1 0.0 6.8e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_13 PF11972.3 gi|336255303|ref|YP_004598410.1| - 5.2e-05 23.0 0.1 0.00014 21.6 0.1 1.7 1 0 0 1 1 1 1 HTH DNA binding domain HTH_5 PF01022.15 gi|336255303|ref|YP_004598410.1| - 6.7e-05 22.4 0.0 0.00012 21.7 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|336255303|ref|YP_004598410.1| - 0.00016 21.3 0.2 0.00029 20.4 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.14 gi|336255303|ref|YP_004598410.1| - 0.00027 20.8 0.1 0.00063 19.6 0.1 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MotA_activ PF09114.5 gi|336255303|ref|YP_004598410.1| - 0.00071 19.2 0.0 0.0017 18.0 0.0 1.7 1 1 0 1 1 1 1 Transcription factor MotA, activation domain Rrf2 PF02082.15 gi|336255303|ref|YP_004598410.1| - 0.00092 19.2 0.0 0.0033 17.5 0.0 1.9 2 0 0 2 2 1 1 Transcriptional regulator GntR PF00392.16 gi|336255303|ref|YP_004598410.1| - 0.0018 17.6 0.1 0.0056 16.0 0.2 1.8 2 0 0 2 2 1 1 Bacterial regulatory proteins, gntR family DUF387 PF04079.11 gi|336255303|ref|YP_004598410.1| - 0.0032 16.8 0.1 0.0059 15.9 0.1 1.4 1 0 0 1 1 1 1 Putative transcriptional regulators (Ypuh-like) Mnd1 PF03962.10 gi|336255303|ref|YP_004598410.1| - 0.0041 16.8 0.0 0.0064 16.1 0.0 1.2 1 0 0 1 1 1 1 Mnd1 family HemN_C PF06969.11 gi|336255303|ref|YP_004598410.1| - 0.006 16.6 0.1 0.019 15.0 0.0 1.8 2 0 0 2 2 1 1 HemN C-terminal domain HTH_12 PF08461.5 gi|336255303|ref|YP_004598410.1| - 0.0087 15.7 0.0 0.019 14.6 0.0 1.6 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_23 PF13384.1 gi|336255303|ref|YP_004598410.1| - 0.0096 15.5 0.1 0.021 14.4 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_36 PF13730.1 gi|336255303|ref|YP_004598410.1| - 0.017 15.2 0.0 0.027 14.5 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain DUF4423 PF14394.1 gi|336255303|ref|YP_004598410.1| - 0.02 14.4 0.0 0.03 13.8 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_AsnC-type PF13404.1 gi|336255303|ref|YP_004598410.1| - 0.053 13.0 0.1 0.13 11.8 0.1 1.7 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain DUF2250 PF10007.4 gi|336255303|ref|YP_004598410.1| - 0.058 13.3 0.0 0.13 12.1 0.0 1.5 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_28 PF13518.1 gi|336255303|ref|YP_004598410.1| - 0.059 13.3 0.1 0.24 11.4 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_10 PF04967.7 gi|336255303|ref|YP_004598410.1| - 0.073 12.6 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain HTH_1 PF00126.22 gi|336255303|ref|YP_004598410.1| - 0.11 12.2 0.1 0.34 10.6 0.0 2.0 1 1 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family LexA_DNA_bind PF01726.11 gi|336255303|ref|YP_004598410.1| - 0.12 11.9 0.0 0.34 10.5 0.0 1.7 2 0 0 2 2 2 0 LexA DNA binding domain HTH_3 PF01381.17 gi|336255303|ref|YP_004598410.1| - 0.13 12.1 0.1 0.26 11.1 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix DUF4364 PF14277.1 gi|336255303|ref|YP_004598410.1| - 0.18 11.3 0.0 0.27 10.8 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) PAC2 PF09754.4 gi|336255304|ref|YP_004598411.1| - 2.8e-50 171.2 0.4 3.5e-50 170.9 0.3 1.0 1 0 0 1 1 1 1 PAC2 family DUF3140 PF11338.3 gi|336255304|ref|YP_004598411.1| - 0.077 13.1 0.0 0.13 12.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3140) DUF1150 PF06620.6 gi|336255304|ref|YP_004598411.1| - 0.16 11.8 0.8 0.24 11.2 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1150) Nop10p PF04135.7 gi|336255305|ref|YP_004598412.1| - 3.1e-23 81.2 1.0 3.4e-23 81.1 0.7 1.0 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family zf-ribbon_3 PF13248.1 gi|336255305|ref|YP_004598412.1| - 0.11 11.7 1.2 0.16 11.2 0.5 1.5 2 0 0 2 2 2 0 zinc-ribbon domain EIF_2_alpha PF07541.7 gi|336255306|ref|YP_004598413.1| - 1.3e-27 95.7 0.0 2.1e-27 95.0 0.0 1.3 1 0 0 1 1 1 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.18 gi|336255306|ref|YP_004598413.1| - 1.1e-12 47.8 1.0 2.4e-12 46.7 0.7 1.6 1 0 0 1 1 1 1 S1 RNA binding domain DUF2073 PF09846.4 gi|336255306|ref|YP_004598413.1| - 0.031 13.9 0.0 0.066 12.8 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2073) Ribosomal_S27e PF01667.12 gi|336255307|ref|YP_004598414.1| - 1e-21 76.1 0.6 1.1e-21 76.0 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein S27 Zn-ribbon_8 PF09723.5 gi|336255307|ref|YP_004598414.1| - 7.9e-05 22.5 1.2 0.0001 22.1 0.9 1.2 1 0 0 1 1 1 1 Zinc ribbon domain Zn_Tnp_IS91 PF14319.1 gi|336255307|ref|YP_004598414.1| - 0.044 13.2 0.2 0.044 13.2 0.2 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain zf-CHY PF05495.7 gi|336255307|ref|YP_004598414.1| - 0.05 13.7 0.7 0.075 13.1 0.5 1.3 1 0 0 1 1 1 0 CHY zinc finger TF_Zn_Ribbon PF08271.7 gi|336255307|ref|YP_004598414.1| - 0.051 12.9 1.4 0.084 12.2 1.0 1.3 1 0 0 1 1 1 0 TFIIB zinc-binding HypA PF01155.14 gi|336255307|ref|YP_004598414.1| - 0.051 13.2 0.8 0.061 13.0 0.6 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-LSD1 PF06943.7 gi|336255307|ref|YP_004598414.1| - 0.053 13.1 2.4 1.5 8.5 0.1 2.3 2 0 0 2 2 2 0 LSD1 zinc finger zf-ribbon_3 PF13248.1 gi|336255307|ref|YP_004598414.1| - 0.06 12.5 1.9 0.14 11.4 1.3 1.6 1 1 0 1 1 1 0 zinc-ribbon domain C1_1 PF00130.17 gi|336255307|ref|YP_004598414.1| - 0.17 11.6 1.2 0.26 11.0 0.8 1.3 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zinc_ribbon_5 PF13719.1 gi|336255307|ref|YP_004598414.1| - 0.21 11.1 3.4 4.1 7.0 0.2 2.2 1 1 1 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|336255307|ref|YP_004598414.1| - 0.3 10.8 3.8 32 4.3 2.6 2.3 1 1 0 1 1 1 0 zinc-ribbon domain Stc1 PF12898.2 gi|336255307|ref|YP_004598414.1| - 0.33 11.0 2.2 0.46 10.5 1.5 1.3 1 1 0 1 1 1 0 Stc1 domain zinc_ribbon_6 PF14599.1 gi|336255307|ref|YP_004598414.1| - 0.36 10.6 2.0 0.74 9.6 1.4 1.5 1 1 0 1 1 1 0 Zinc-ribbon Ribosomal_L44 PF00935.14 gi|336255308|ref|YP_004598415.1| - 2.3e-27 94.8 2.5 2.8e-27 94.5 1.8 1.1 1 0 0 1 1 1 1 Ribosomal protein L44 Terminase_GpA PF05876.7 gi|336255308|ref|YP_004598415.1| - 0.002 16.5 0.6 0.0025 16.2 0.4 1.1 1 0 0 1 1 1 1 Phage terminase large subunit (GpA) zf-ribbon_3 PF13248.1 gi|336255308|ref|YP_004598415.1| - 0.0026 16.8 0.6 1.8 7.8 0.0 2.3 2 0 0 2 2 2 2 zinc-ribbon domain DUF2296 PF10058.4 gi|336255308|ref|YP_004598415.1| - 0.0065 16.1 2.0 1 9.1 0.0 2.2 2 0 0 2 2 2 2 Predicted integral membrane metal-binding protein (DUF2296) zinc_ribbon_2 PF13240.1 gi|336255308|ref|YP_004598415.1| - 0.011 15.1 5.5 1.2 8.6 1.6 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-Mss51 PF13824.1 gi|336255308|ref|YP_004598415.1| - 0.017 14.9 0.6 0.027 14.3 0.4 1.4 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Zn_Tnp_IS1595 PF12760.2 gi|336255308|ref|YP_004598415.1| - 0.02 14.6 2.6 2.3 8.1 0.1 2.3 2 0 0 2 2 2 0 Transposase zinc-ribbon domain DZR PF12773.2 gi|336255308|ref|YP_004598415.1| - 0.027 14.2 3.6 0.12 12.2 2.5 1.8 1 1 0 1 1 1 0 Double zinc ribbon Lar_restr_allev PF14354.1 gi|336255308|ref|YP_004598415.1| - 0.03 14.6 0.1 0.068 13.4 0.1 1.6 1 1 0 1 1 1 0 Restriction alleviation protein Lar Tnp_zf-ribbon_2 PF13842.1 gi|336255308|ref|YP_004598415.1| - 0.031 14.6 2.2 0.65 10.4 0.1 2.3 2 0 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon zf-ISL3 PF14690.1 gi|336255308|ref|YP_004598415.1| - 0.049 13.6 2.7 5.8 7.0 0.2 2.4 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn-ribbon_8 PF09723.5 gi|336255308|ref|YP_004598415.1| - 0.05 13.5 2.5 2.4 8.1 0.2 2.3 2 0 0 2 2 2 0 Zinc ribbon domain WCCH PF03716.9 gi|336255308|ref|YP_004598415.1| - 0.26 10.7 3.7 0.44 10.0 2.5 1.4 1 0 0 1 1 1 0 WCCH motif zinc_ribbon_5 PF13719.1 gi|336255308|ref|YP_004598415.1| - 0.41 10.2 2.3 12 5.5 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|336255308|ref|YP_004598415.1| - 0.47 10.1 2.2 14 5.4 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Nudix_N_2 PF14803.1 gi|336255308|ref|YP_004598415.1| - 0.71 9.6 4.0 14 5.4 0.1 2.6 2 1 0 2 2 2 0 Nudix N-terminal zf-HIT PF04438.11 gi|336255308|ref|YP_004598415.1| - 1.9 8.2 6.0 2 8.1 0.5 2.2 2 0 0 2 2 2 0 HIT zinc finger Ribosomal_L33 PF00471.15 gi|336255308|ref|YP_004598415.1| - 5.3 7.3 7.6 0.99 9.7 1.8 2.1 2 0 0 2 2 2 0 Ribosomal protein L33 GtrA PF04138.9 gi|336255310|ref|YP_004598417.1| - 1.2e-22 80.0 10.7 1.4e-22 79.8 7.4 1.0 1 0 0 1 1 1 1 GtrA-like protein AF-4 PF05110.8 gi|336255312|ref|YP_004598419.1| - 9.8 3.8 10.0 12 3.6 6.9 1.0 1 0 0 1 1 1 0 AF-4 proto-oncoprotein ABC_tran PF00005.22 gi|336255313|ref|YP_004598420.1| - 2.8e-33 115.0 0.0 4.8e-33 114.3 0.0 1.4 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|336255313|ref|YP_004598420.1| - 6.3e-16 58.4 1.4 1.2e-15 57.5 1.0 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|336255313|ref|YP_004598420.1| - 5.5e-08 33.1 0.1 3.8e-05 23.7 0.0 2.2 1 1 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|336255313|ref|YP_004598420.1| - 0.0003 20.9 0.2 0.0035 17.4 0.0 2.4 2 1 0 2 2 2 1 AAA domain SMC_N PF02463.14 gi|336255313|ref|YP_004598420.1| - 0.0017 17.6 0.0 0.0078 15.4 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|336255313|ref|YP_004598420.1| - 0.0047 16.9 0.5 0.015 15.2 0.1 2.0 2 1 0 2 2 2 1 AAA ATPase domain AAA_18 PF13238.1 gi|336255313|ref|YP_004598420.1| - 0.0079 16.4 0.0 0.033 14.5 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA PF00004.24 gi|336255313|ref|YP_004598420.1| - 0.011 15.9 0.0 0.05 13.8 0.0 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|336255313|ref|YP_004598420.1| - 0.028 14.1 0.7 0.62 9.7 0.1 2.7 3 1 0 3 3 3 0 AAA domain (dynein-related subfamily) AAA_13 PF13166.1 gi|336255313|ref|YP_004598420.1| - 0.028 12.8 0.0 2.6 6.4 0.0 2.2 2 0 0 2 2 2 0 AAA domain ATP-synt_ab PF00006.20 gi|336255313|ref|YP_004598420.1| - 0.037 13.5 0.0 0.1 12.1 0.1 1.3 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain DUF258 PF03193.11 gi|336255313|ref|YP_004598420.1| - 0.067 12.3 0.0 0.12 11.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 PduV-EutP PF10662.4 gi|336255313|ref|YP_004598420.1| - 0.084 12.3 0.4 0.35 10.3 0.1 1.9 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_29 PF13555.1 gi|336255313|ref|YP_004598420.1| - 0.088 12.3 0.1 0.17 11.4 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain SbcCD_C PF13558.1 gi|336255313|ref|YP_004598420.1| - 0.089 12.7 0.1 0.51 10.2 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit FtsK_SpoIIIE PF01580.13 gi|336255313|ref|YP_004598420.1| - 0.11 11.9 0.0 0.23 10.8 0.0 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family DUF2170 PF09938.4 gi|336255313|ref|YP_004598420.1| - 0.14 11.4 0.0 0.25 10.6 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2170) AAA_25 PF13481.1 gi|336255313|ref|YP_004598420.1| - 0.19 11.1 2.6 1.2 8.4 0.6 2.6 2 1 0 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|336255314|ref|YP_004598421.1| - 4.9e-28 98.1 0.0 1.8e-15 57.4 0.0 2.3 2 0 0 2 2 2 2 ABC transporter oligo_HPY PF08352.7 gi|336255314|ref|YP_004598421.1| - 3.3e-20 72.1 0.2 7.5e-20 71.0 0.2 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|336255314|ref|YP_004598421.1| - 3.7e-07 30.4 0.0 9.2e-05 22.5 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|336255314|ref|YP_004598421.1| - 0.0018 17.5 0.1 0.26 10.5 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|336255314|ref|YP_004598421.1| - 0.0083 16.1 0.2 0.075 13.0 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain FtsK_SpoIIIE PF01580.13 gi|336255314|ref|YP_004598421.1| - 0.02 14.3 0.0 0.044 13.2 0.0 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_10 PF12846.2 gi|336255314|ref|YP_004598421.1| - 0.024 14.0 0.1 0.14 11.6 0.0 2.0 2 1 0 2 2 2 0 AAA-like domain AAA_29 PF13555.1 gi|336255314|ref|YP_004598421.1| - 0.025 14.0 0.1 0.059 12.8 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|336255314|ref|YP_004598421.1| - 0.035 14.2 0.1 1.1 9.3 0.0 2.5 3 0 0 3 3 3 0 AAA domain ATP-synt_ab PF00006.20 gi|336255314|ref|YP_004598421.1| - 0.045 13.2 0.0 0.064 12.7 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain DUF87 PF01935.12 gi|336255314|ref|YP_004598421.1| - 0.071 12.9 0.0 0.13 12.0 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function DUF87 Sigma54_activat PF00158.21 gi|336255314|ref|YP_004598421.1| - 0.12 11.8 0.1 0.54 9.7 0.0 1.9 2 0 0 2 2 2 0 Sigma-54 interaction domain BPD_transp_1 PF00528.17 gi|336255315|ref|YP_004598422.1| - 3.6e-22 78.7 6.7 3.6e-22 78.7 4.6 3.4 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|336255315|ref|YP_004598422.1| - 0.00068 18.9 0.1 0.00068 18.9 0.0 3.3 5 0 0 5 5 5 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.17 gi|336255316|ref|YP_004598423.1| - 6.4e-35 120.3 12.5 6.4e-35 120.3 8.7 2.1 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.17 gi|336255317|ref|YP_004598424.1| - 2.7e-72 243.6 1.1 3.6e-72 243.2 0.8 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Pribosyltran PF00156.22 gi|336255318|ref|YP_004598425.1| - 1.5e-17 63.4 1.6 1.5e-17 63.4 1.1 1.4 2 0 0 2 2 2 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|336255318|ref|YP_004598425.1| - 0.00012 21.3 0.4 0.00013 21.2 0.3 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|336255318|ref|YP_004598425.1| - 0.13 11.5 0.2 0.18 11.0 0.1 1.3 1 0 0 1 1 1 0 Phosphoribosyl transferase CRISPR_Cse2 PF09485.5 gi|336255319|ref|YP_004598426.1| - 0.0094 16.0 0.0 0.019 15.0 0.0 1.5 1 0 0 1 1 1 1 CRISPR-associated protein Cse2 (CRISPR_cse2) DFP PF04127.10 gi|336255320|ref|YP_004598427.1| - 3.7e-54 183.1 1.5 8.1e-53 178.7 0.3 2.2 2 0 0 2 2 2 2 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.14 gi|336255320|ref|YP_004598427.1| - 2.5e-28 98.3 0.1 4.9e-28 97.3 0.0 1.5 1 0 0 1 1 1 1 Flavoprotein NAD_binding_10 PF13460.1 gi|336255320|ref|YP_004598427.1| - 0.002 18.1 4.7 0.0031 17.5 0.5 2.9 3 1 0 3 3 3 1 NADH(P)-binding Acetyltransf_1 PF00583.19 gi|336255321|ref|YP_004598428.1| - 5.1e-18 64.8 0.1 7.9e-18 64.2 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|336255321|ref|YP_004598428.1| - 1.4e-11 44.5 0.0 2.1e-11 43.9 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|336255321|ref|YP_004598428.1| - 2.7e-09 37.0 0.0 3.5e-09 36.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|336255321|ref|YP_004598428.1| - 6.9e-07 28.9 0.0 9.9e-07 28.4 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.1 gi|336255321|ref|YP_004598428.1| - 2.5e-06 27.4 0.2 3.9e-06 26.8 0.1 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|336255321|ref|YP_004598428.1| - 9.3e-06 25.8 0.0 1.1e-05 25.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|336255321|ref|YP_004598428.1| - 7.9e-05 22.6 0.0 0.00012 22.0 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|336255321|ref|YP_004598428.1| - 0.00017 21.3 0.0 0.00036 20.3 0.0 1.5 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.1 gi|336255321|ref|YP_004598428.1| - 0.0064 16.3 0.0 0.017 14.9 0.0 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain FGase PF05013.7 gi|336255321|ref|YP_004598428.1| - 0.02 14.7 0.6 0.035 13.9 0.1 1.6 2 0 0 2 2 2 0 N-formylglutamate amidohydrolase N6_N4_Mtase PF01555.13 gi|336255322|ref|YP_004598429.1| - 2e-18 66.7 0.0 3.1e-09 36.6 0.0 2.1 2 0 0 2 2 2 2 DNA methylase Methyltransf_26 PF13659.1 gi|336255322|ref|YP_004598429.1| - 1.4e-10 41.1 0.0 2.3e-10 40.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|336255322|ref|YP_004598429.1| - 0.00049 20.6 0.0 0.00077 20.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Met_10 PF02475.11 gi|336255322|ref|YP_004598429.1| - 0.018 14.6 0.0 0.035 13.6 0.0 1.4 1 0 0 1 1 1 0 Met-10+ like-protein Pyr_redox_2 PF07992.9 gi|336255323|ref|YP_004598430.1| - 2.3e-09 37.4 1.2 2.2e-05 24.4 0.1 2.2 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|336255323|ref|YP_004598430.1| - 5.1e-09 35.5 8.2 0.0001 21.3 0.9 2.3 2 1 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|336255323|ref|YP_004598430.1| - 2.1e-05 23.5 9.4 0.00023 20.1 2.8 2.2 1 1 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.2 gi|336255323|ref|YP_004598430.1| - 0.00022 20.4 5.6 0.00023 20.3 2.6 1.8 2 0 0 2 2 2 1 FAD dependent oxidoreductase GIDA PF01134.17 gi|336255323|ref|YP_004598430.1| - 0.00026 19.9 0.4 0.00038 19.4 0.3 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A FAD_binding_3 PF01494.14 gi|336255323|ref|YP_004598430.1| - 0.0012 18.0 0.8 0.0019 17.2 0.6 1.4 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.1 gi|336255323|ref|YP_004598430.1| - 0.0044 17.0 1.5 0.006 16.5 0.2 1.8 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|336255323|ref|YP_004598430.1| - 0.0068 14.9 0.1 0.037 12.4 0.4 1.7 2 0 0 2 2 2 1 HI0933-like protein 3HCDH_N PF02737.13 gi|336255323|ref|YP_004598430.1| - 0.067 12.8 0.1 0.1 12.2 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox_3 PF13738.1 gi|336255323|ref|YP_004598430.1| - 0.11 12.5 3.6 8.9 6.3 1.2 2.1 1 1 1 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|336255323|ref|YP_004598430.1| - 0.16 12.3 0.5 0.46 10.9 0.3 1.8 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|336255323|ref|YP_004598430.1| - 0.23 10.3 0.8 0.4 9.5 0.4 1.4 2 0 0 2 2 2 0 Lycopene cyclase protein Peptidase_M48 PF01435.13 gi|336255324|ref|YP_004598431.1| - 6e-20 71.7 0.0 8.9e-20 71.2 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M48 DUF2268 PF10026.4 gi|336255324|ref|YP_004598431.1| - 0.057 12.7 0.0 0.085 12.2 0.0 1.2 1 0 0 1 1 1 0 Predicted Zn-dependent protease (DUF2268) Peptidase_M43 PF05572.8 gi|336255324|ref|YP_004598431.1| - 0.14 11.7 0.0 0.22 11.1 0.0 1.2 1 0 0 1 1 1 0 Pregnancy-associated plasma protein-A Polyketide_cyc2 PF10604.4 gi|336255325|ref|YP_004598432.1| - 1.4e-08 34.9 0.8 2e-08 34.4 0.5 1.3 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.15 gi|336255325|ref|YP_004598432.1| - 1.6e-05 24.8 0.1 3.1e-05 23.9 0.1 1.5 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport TrkA_N PF02254.13 gi|336255326|ref|YP_004598433.1| - 2e-51 172.8 9.8 1.7e-26 92.5 1.4 2.9 3 0 0 3 3 3 2 TrkA-N domain TrkA_C PF02080.16 gi|336255326|ref|YP_004598433.1| - 7.6e-27 92.7 15.5 1.9e-14 53.0 0.2 3.9 3 1 0 3 3 3 2 TrkA-C domain Shikimate_DH PF01488.15 gi|336255326|ref|YP_004598433.1| - 1.9e-11 44.2 2.0 2.4e-05 24.4 0.4 2.5 2 1 0 2 2 2 2 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.1 gi|336255326|ref|YP_004598433.1| - 1.6e-10 41.1 3.0 2.9e-05 24.2 0.8 2.8 3 0 0 3 3 3 2 Putative NAD(P)-binding Saccharop_dh PF03435.13 gi|336255326|ref|YP_004598433.1| - 1.2e-06 27.7 3.3 0.00019 20.5 0.9 2.2 2 0 0 2 2 2 2 Saccharopine dehydrogenase 3HCDH_N PF02737.13 gi|336255326|ref|YP_004598433.1| - 1.7e-06 27.8 0.2 0.0014 18.3 0.2 2.4 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_binding_3 PF01494.14 gi|336255326|ref|YP_004598433.1| - 2.5e-06 26.7 0.6 0.0019 17.3 0.2 3.1 3 0 0 3 3 3 1 FAD binding domain F420_oxidored PF03807.12 gi|336255326|ref|YP_004598433.1| - 6.3e-06 26.5 1.4 0.022 15.1 0.2 3.1 3 1 0 3 3 2 2 NADP oxidoreductase coenzyme F420-dependent UDPG_MGDP_dh_N PF03721.9 gi|336255326|ref|YP_004598433.1| - 4.5e-05 22.8 0.2 0.00056 19.3 0.2 2.6 3 0 0 3 3 3 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|336255326|ref|YP_004598433.1| - 0.00012 21.8 0.0 0.011 15.5 0.0 2.5 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ADH_zinc_N PF00107.21 gi|336255326|ref|YP_004598433.1| - 0.00015 21.2 3.7 0.00058 19.4 0.0 3.5 4 1 1 5 5 5 1 Zinc-binding dehydrogenase NAD_binding_2 PF03446.10 gi|336255326|ref|YP_004598433.1| - 0.00033 20.5 0.1 0.16 11.7 0.1 2.5 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase CPSase_L_chain PF00289.17 gi|336255326|ref|YP_004598433.1| - 0.001 19.1 0.6 4.6 7.3 0.1 3.6 3 1 0 3 3 3 1 Carbamoyl-phosphate synthase L chain, N-terminal domain ApbA PF02558.11 gi|336255326|ref|YP_004598433.1| - 0.0015 17.9 0.4 0.0058 16.0 0.1 2.1 2 1 0 2 2 2 1 Ketopantoate reductase PanE/ApbA ThiF PF00899.16 gi|336255326|ref|YP_004598433.1| - 0.0025 17.6 4.4 0.025 14.3 0.3 3.5 2 2 1 3 3 3 1 ThiF family Pyr_redox_2 PF07992.9 gi|336255326|ref|YP_004598433.1| - 0.0036 17.1 0.3 1.1 9.1 0.2 2.7 1 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Fucokinase PF07959.7 gi|336255326|ref|YP_004598433.1| - 0.032 12.7 0.0 0.06 11.9 0.0 1.5 1 1 0 1 1 1 0 L-fucokinase NmrA PF05368.8 gi|336255326|ref|YP_004598433.1| - 0.038 13.2 4.6 0.83 8.8 0.8 2.9 3 0 0 3 3 3 0 NmrA-like family 2-Hacid_dh_C PF02826.14 gi|336255326|ref|YP_004598433.1| - 0.04 13.0 0.1 3.7 6.6 0.1 2.5 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|336255326|ref|YP_004598433.1| - 0.054 14.0 1.8 8 7.0 0.3 3.5 2 1 1 3 3 3 0 Oxidoreductase family, NAD-binding Rossmann fold Pyr_redox PF00070.22 gi|336255326|ref|YP_004598433.1| - 0.54 10.6 12.0 1.1 9.7 0.0 3.5 4 1 0 4 4 2 0 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|336255326|ref|YP_004598433.1| - 1.7 7.4 6.9 0.81 8.5 1.7 2.6 3 1 0 3 3 3 0 FAD dependent oxidoreductase Peptidase_M42 PF05343.9 gi|336255327|ref|YP_004598434.1| - 1.1e-88 296.8 0.4 1.3e-88 296.5 0.3 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.23 gi|336255327|ref|YP_004598434.1| - 2e-13 50.2 0.3 3.5e-13 49.4 0.2 1.4 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M28 PF04389.12 gi|336255327|ref|YP_004598434.1| - 2e-07 30.9 0.2 1.5e-06 28.0 0.1 2.0 2 0 0 2 2 2 1 Peptidase family M28 Peptidase_M18 PF02127.10 gi|336255327|ref|YP_004598434.1| - 8.6e-05 21.2 0.0 0.13 10.7 0.0 2.1 2 0 0 2 2 2 2 Aminopeptidase I zinc metalloprotease (M18) Thiolase_N PF00108.18 gi|336255328|ref|YP_004598435.1| - 1.1e-12 47.5 0.1 7.4e-11 41.5 0.0 2.2 2 0 0 2 2 2 2 Thiolase, N-terminal domain Thiolase_C PF02803.13 gi|336255328|ref|YP_004598435.1| - 1.7e-09 37.1 0.4 4.2e-09 35.8 0.3 1.7 1 0 0 1 1 1 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.21 gi|336255328|ref|YP_004598435.1| - 6.3e-09 35.6 3.3 6.3e-09 35.6 2.3 3.2 3 1 0 3 3 3 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.5 gi|336255328|ref|YP_004598435.1| - 0.0026 17.3 0.7 1.7 8.3 0.1 2.7 2 0 0 2 2 2 2 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Ketoacyl-synt_C PF02801.17 gi|336255328|ref|YP_004598435.1| - 0.074 12.8 6.6 0.39 10.5 1.2 3.4 3 1 0 3 3 3 0 Beta-ketoacyl synthase, C-terminal domain DUF35 PF01796.12 gi|336255329|ref|YP_004598436.1| - 1e-13 51.2 1.2 1.5e-13 50.7 0.8 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain DUF35_N PF12172.3 gi|336255329|ref|YP_004598436.1| - 8.5e-05 22.3 1.1 0.00021 21.1 0.8 1.8 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) TF_Zn_Ribbon PF08271.7 gi|336255329|ref|YP_004598436.1| - 0.033 13.5 0.2 0.062 12.6 0.1 1.4 1 0 0 1 1 1 0 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|336255329|ref|YP_004598436.1| - 0.08 12.1 0.2 0.16 11.2 0.1 1.5 1 0 0 1 1 1 0 zinc-ribbon domain dCMP_cyt_deam_1 PF00383.17 gi|336255330|ref|YP_004598437.1| - 6.7e-15 54.5 0.0 8.7e-15 54.2 0.0 1.2 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region XOO_2897-deam PF14440.1 gi|336255330|ref|YP_004598437.1| - 0.00065 19.4 0.0 0.00084 19.0 0.0 1.3 1 0 0 1 1 1 1 Xanthomonas XOO_2897-like deaminase APOBEC_N PF08210.6 gi|336255330|ref|YP_004598437.1| - 0.0068 16.0 0.0 0.0085 15.7 0.0 1.1 1 0 0 1 1 1 1 APOBEC-like N-terminal domain SCP1201-deam PF14428.1 gi|336255330|ref|YP_004598437.1| - 0.01 15.5 0.1 0.016 14.8 0.0 1.3 1 0 0 1 1 1 0 SCP1.201-like deaminase Bd3614-deam PF14439.1 gi|336255330|ref|YP_004598437.1| - 0.025 14.4 0.1 0.038 13.8 0.1 1.4 1 0 0 1 1 1 0 Bd3614-like deaminase RDD PF06271.7 gi|336255332|ref|YP_004598439.1| - 9.6e-21 74.1 5.9 1.1e-20 73.9 4.1 1.0 1 0 0 1 1 1 1 RDD family ABC2_membrane_2 PF12679.2 gi|336255332|ref|YP_004598439.1| - 0.073 11.9 2.7 0.09 11.6 1.9 1.2 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF418 PF04235.7 gi|336255332|ref|YP_004598439.1| - 0.81 9.3 5.2 0.75 9.4 2.9 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF418) HR_lesion PF05514.6 gi|336255332|ref|YP_004598439.1| - 1.1 9.0 5.4 0.88 9.3 2.9 1.4 1 1 0 1 1 1 0 HR-like lesion-inducing NUDIX PF00293.23 gi|336255333|ref|YP_004598440.1| - 1.3e-18 66.9 0.4 1.7e-18 66.5 0.2 1.1 1 0 0 1 1 1 1 NUDIX domain Ribosomal_S10 PF00338.17 gi|336255334|ref|YP_004598441.1| - 2.7e-14 52.7 0.0 3.1e-14 52.5 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e Peptidase_M20 PF01546.23 gi|336255335|ref|YP_004598442.1| - 7.2e-23 81.0 13.9 3.5e-22 78.8 9.6 1.9 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|336255335|ref|YP_004598442.1| - 9.6e-13 47.8 0.6 2.7e-12 46.4 0.2 1.8 2 0 0 2 2 2 1 Peptidase dimerisation domain Peptidase_M48 PF01435.13 gi|336255336|ref|YP_004598443.1| - 2.9e-22 79.3 0.0 5e-22 78.5 0.0 1.4 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|336255336|ref|YP_004598443.1| - 0.0011 18.0 0.0 0.0021 17.1 0.0 1.5 1 0 0 1 1 1 1 BlaR1 peptidase M56 DUF2201_N PF13203.1 gi|336255336|ref|YP_004598443.1| - 0.041 13.0 2.2 0.11 11.6 0.0 2.0 1 1 1 2 2 2 0 Putative metallopeptidase domain SprT-like PF10263.4 gi|336255336|ref|YP_004598443.1| - 0.093 12.3 0.0 0.14 11.7 0.0 1.2 1 0 0 1 1 1 0 SprT-like family DUF45 PF01863.12 gi|336255336|ref|YP_004598443.1| - 0.15 11.8 0.0 0.26 11.0 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function DUF45 Peptidase_MA_2 PF13485.1 gi|336255336|ref|YP_004598443.1| - 0.18 11.8 0.8 0.39 10.7 0.1 2.0 2 1 0 2 2 2 0 Peptidase MA superfamily FAD_binding_2 PF00890.19 gi|336255337|ref|YP_004598444.1| - 1.5e-11 43.8 4.0 1.3e-07 30.8 0.3 2.6 3 0 0 3 3 3 2 FAD binding domain DAO PF01266.19 gi|336255337|ref|YP_004598444.1| - 1.6e-11 43.7 8.8 1.1e-05 24.4 1.1 2.9 2 1 1 3 3 3 2 FAD dependent oxidoreductase Trp_halogenase PF04820.9 gi|336255337|ref|YP_004598444.1| - 3.4e-11 42.4 0.6 5.8e-07 28.4 0.0 2.1 2 0 0 2 2 2 2 Tryptophan halogenase FAD_oxidored PF12831.2 gi|336255337|ref|YP_004598444.1| - 4.5e-09 35.8 10.1 1.7e-05 24.1 1.1 2.7 3 0 0 3 3 3 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|336255337|ref|YP_004598444.1| - 4.9e-09 35.6 3.0 6.3e-05 22.1 0.1 2.4 2 1 0 2 2 2 2 FAD binding domain Pyr_redox_2 PF07992.9 gi|336255337|ref|YP_004598444.1| - 6.5e-09 35.9 0.2 6.5e-09 35.9 0.2 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|336255337|ref|YP_004598444.1| - 5.1e-08 32.1 4.4 1.8e-07 30.3 3.0 1.9 1 1 0 1 1 1 1 Glucose inhibited division protein A Thi4 PF01946.12 gi|336255337|ref|YP_004598444.1| - 2.5e-07 30.0 2.6 5.8e-06 25.5 0.3 2.2 2 0 0 2 2 2 1 Thi4 family NAD_binding_8 PF13450.1 gi|336255337|ref|YP_004598444.1| - 2.7e-07 30.5 3.9 2.3e-06 27.5 0.4 2.7 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.1 gi|336255337|ref|YP_004598444.1| - 3.3e-07 30.5 0.0 5.8e-07 29.7 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|336255337|ref|YP_004598444.1| - 2.2e-05 23.1 2.0 5.5e-05 21.8 0.2 2.0 2 0 0 2 2 2 1 HI0933-like protein AlaDh_PNT_C PF01262.16 gi|336255337|ref|YP_004598444.1| - 0.00026 20.6 0.2 0.00056 19.5 0.2 1.5 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.13 gi|336255337|ref|YP_004598444.1| - 0.0004 20.0 0.0 0.00079 19.1 0.0 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Lycopene_cycl PF05834.7 gi|336255337|ref|YP_004598444.1| - 0.0004 19.4 2.5 0.022 13.7 0.1 2.6 3 0 0 3 3 3 1 Lycopene cyclase protein Pyr_redox PF00070.22 gi|336255337|ref|YP_004598444.1| - 0.0023 18.3 0.6 0.0023 18.3 0.4 2.8 3 0 0 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase ThiF PF00899.16 gi|336255337|ref|YP_004598444.1| - 0.0082 15.9 0.3 0.021 14.6 0.1 1.8 2 0 0 2 2 2 1 ThiF family ApbA PF02558.11 gi|336255337|ref|YP_004598444.1| - 0.0094 15.3 0.0 0.016 14.6 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA THF_DHG_CYH_C PF02882.14 gi|336255337|ref|YP_004598444.1| - 0.011 14.7 0.1 0.48 9.4 0.0 2.4 2 0 0 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Shikimate_DH PF01488.15 gi|336255337|ref|YP_004598444.1| - 0.013 15.5 0.0 0.076 13.1 0.0 2.2 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase GMC_oxred_N PF00732.14 gi|336255337|ref|YP_004598444.1| - 0.021 13.9 0.1 1 8.4 0.0 2.1 2 0 0 2 2 2 0 GMC oxidoreductase RPAP2_Rtr1 PF04181.8 gi|336255337|ref|YP_004598444.1| - 0.083 12.9 0.0 0.55 10.3 0.0 2.0 2 0 0 2 2 2 0 Rtr1/RPAP2 family CPSase_L_chain PF00289.17 gi|336255337|ref|YP_004598444.1| - 0.095 12.8 0.3 0.7 10.0 0.0 2.5 3 0 0 3 3 2 0 Carbamoyl-phosphate synthase L chain, N-terminal domain Fer2 PF00111.22 gi|336255338|ref|YP_004598445.1| - 3.9e-11 42.5 4.9 5.2e-11 42.1 3.4 1.2 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.1 gi|336255338|ref|YP_004598445.1| - 0.0091 15.8 0.3 0.01 15.6 0.2 1.2 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Lactamase_B PF00753.22 gi|336255339|ref|YP_004598446.1| - 1.6e-23 83.3 2.4 2.9e-23 82.5 1.7 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Rhodanese PF00581.15 gi|336255339|ref|YP_004598446.1| - 1.9e-09 37.8 0.0 3.8e-09 36.8 0.0 1.5 1 0 0 1 1 1 1 Rhodanese-like domain Lactamase_B_2 PF12706.2 gi|336255339|ref|YP_004598446.1| - 1.3e-05 24.8 0.1 6.3e-05 22.6 0.0 2.0 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Rubrerythrin PF02915.12 gi|336255340|ref|YP_004598447.1| - 0.006 16.8 0.6 0.032 14.5 0.2 2.0 2 0 0 2 2 2 1 Rubrerythrin DUF349 PF03993.7 gi|336255340|ref|YP_004598447.1| - 0.0099 16.0 1.3 3 8.0 0.2 2.4 2 0 0 2 2 2 2 Domain of Unknown Function (DUF349) GDYXXLXY PF14345.1 gi|336255340|ref|YP_004598447.1| - 0.11 12.3 0.1 0.14 12.0 0.1 1.4 1 1 0 1 1 1 0 GDYXXLXY protein PRT_C PF08372.5 gi|336255340|ref|YP_004598447.1| - 0.14 11.6 0.0 0.34 10.4 0.0 1.6 1 0 0 1 1 1 0 Plant phosphoribosyltransferase C-terminal CHASE3 PF05227.8 gi|336255340|ref|YP_004598447.1| - 0.48 10.0 5.2 0.44 10.2 1.3 2.1 2 0 0 2 2 2 0 CHASE3 domain Hemerythrin PF01814.18 gi|336255340|ref|YP_004598447.1| - 0.54 10.4 5.8 0.9 9.7 3.0 1.9 1 1 1 2 2 2 0 Hemerythrin HHE cation binding domain FtsZ_C PF12327.3 gi|336255341|ref|YP_004598448.1| - 5.3e-37 125.7 4.2 7.1e-37 125.3 1.6 2.2 2 0 0 2 2 2 1 FtsZ family, C-terminal domain Tubulin PF00091.20 gi|336255341|ref|YP_004598448.1| - 1.4e-35 123.0 0.4 3.3e-35 121.8 0.3 1.6 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.1 gi|336255341|ref|YP_004598448.1| - 4.7 6.0 6.7 3.4 6.5 2.1 2.2 1 1 1 2 2 2 0 Tubulin like tRNA_deacylase PF04414.7 gi|336255342|ref|YP_004598449.1| - 1e-59 201.2 0.0 1.7e-59 200.5 0.0 1.3 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase PAS_9 PF13426.1 gi|336255343|ref|YP_004598450.1| - 1.4e-47 160.3 0.1 2.8e-16 59.7 0.1 3.6 3 0 0 3 3 3 3 PAS domain PAS_4 PF08448.5 gi|336255343|ref|YP_004598450.1| - 1.1e-41 141.3 12.3 1e-17 64.1 0.0 5.2 5 0 0 5 5 5 3 PAS fold PAS PF00989.19 gi|336255343|ref|YP_004598450.1| - 1.1e-34 118.5 0.0 1.7e-11 43.8 0.0 3.4 3 0 0 3 3 3 3 PAS fold PAS_3 PF08447.6 gi|336255343|ref|YP_004598450.1| - 5e-26 90.6 0.1 5.4e-10 39.2 0.0 3.6 3 0 0 3 3 3 3 PAS fold HTH_10 PF04967.7 gi|336255343|ref|YP_004598450.1| - 1.7e-16 59.5 0.1 4.4e-16 58.2 0.1 1.8 1 0 0 1 1 1 1 HTH DNA binding domain GAF_2 PF13185.1 gi|336255343|ref|YP_004598450.1| - 3.6e-12 47.0 1.6 1e-11 45.5 1.1 1.9 1 0 0 1 1 1 1 GAF domain PAS_8 PF13188.1 gi|336255343|ref|YP_004598450.1| - 4.5e-10 39.0 0.6 0.00032 20.4 0.0 4.0 3 0 0 3 3 3 2 PAS domain PAS_7 PF12860.2 gi|336255343|ref|YP_004598450.1| - 1.6e-08 34.5 0.0 0.039 13.9 0.0 4.0 3 0 0 3 3 3 2 PAS fold GAF_3 PF13492.1 gi|336255343|ref|YP_004598450.1| - 9.3e-07 28.9 0.6 4.6e-06 26.7 0.0 2.6 3 0 0 3 3 3 1 GAF domain PAS_11 PF14598.1 gi|336255343|ref|YP_004598450.1| - 3.4e-05 23.7 0.0 0.017 15.0 0.0 3.2 3 0 0 3 3 3 1 PAS domain GAF PF01590.21 gi|336255343|ref|YP_004598450.1| - 7.7e-05 22.8 0.1 0.00021 21.4 0.0 1.9 1 0 0 1 1 1 1 GAF domain HTH_20 PF12840.2 gi|336255343|ref|YP_004598450.1| - 0.023 14.4 0.0 0.078 12.7 0.0 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain CodY PF06018.9 gi|336255343|ref|YP_004598450.1| - 0.067 12.4 0.0 0.37 10.0 0.0 2.1 2 0 0 2 2 2 0 CodY GAF-like domain GerE PF00196.14 gi|336255343|ref|YP_004598450.1| - 0.099 11.9 0.0 1.1 8.6 0.0 2.4 3 0 0 3 3 3 0 Bacterial regulatory proteins, luxR family Na_Ca_ex PF01699.19 gi|336255345|ref|YP_004598452.1| - 9.9e-46 154.8 36.3 3.7e-25 88.1 9.8 2.2 2 0 0 2 2 2 2 Sodium/calcium exchanger protein Shikimate_dh_N PF08501.6 gi|336255346|ref|YP_004598453.1| - 6.5e-27 93.4 0.0 1.3e-26 92.4 0.0 1.5 1 0 0 1 1 1 1 Shikimate dehydrogenase substrate binding domain Shikimate_DH PF01488.15 gi|336255346|ref|YP_004598453.1| - 2.4e-16 60.0 0.0 3.5e-16 59.5 0.0 1.2 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase 2-Hacid_dh_C PF02826.14 gi|336255346|ref|YP_004598453.1| - 1.1e-05 24.6 0.0 2.1e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.7 gi|336255346|ref|YP_004598453.1| - 0.0001 21.7 0.1 0.00018 20.9 0.1 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain F420_oxidored PF03807.12 gi|336255346|ref|YP_004598453.1| - 0.00011 22.6 0.1 0.00019 21.7 0.1 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_10 PF13460.1 gi|336255346|ref|YP_004598453.1| - 0.00044 20.3 1.1 0.00085 19.3 0.8 1.6 1 0 0 1 1 1 1 NADH(P)-binding NAD_binding_2 PF03446.10 gi|336255346|ref|YP_004598453.1| - 0.0015 18.4 0.1 0.0026 17.5 0.1 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase THF_DHG_CYH_C PF02882.14 gi|336255346|ref|YP_004598453.1| - 0.0052 15.8 0.0 0.11 11.5 0.0 2.2 1 1 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 3HCDH_N PF02737.13 gi|336255346|ref|YP_004598453.1| - 0.0059 16.2 0.3 0.0087 15.7 0.2 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Saccharop_dh PF03435.13 gi|336255346|ref|YP_004598453.1| - 0.008 15.1 0.5 0.011 14.7 0.3 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase ApbA PF02558.11 gi|336255346|ref|YP_004598453.1| - 0.011 15.2 0.0 0.017 14.5 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.18 gi|336255346|ref|YP_004598453.1| - 0.014 15.1 0.7 0.054 13.2 0.5 1.9 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_7 PF13241.1 gi|336255346|ref|YP_004598453.1| - 0.018 15.2 0.0 0.029 14.6 0.0 1.3 1 0 0 1 1 1 0 Putative NAD(P)-binding AdoHcyase_NAD PF00670.16 gi|336255346|ref|YP_004598453.1| - 0.033 14.0 0.0 0.054 13.3 0.0 1.3 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Pyr_redox_2 PF07992.9 gi|336255346|ref|YP_004598453.1| - 0.09 12.6 0.1 0.12 12.2 0.1 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Malic_M PF03949.10 gi|336255346|ref|YP_004598453.1| - 0.14 11.6 1.3 0.34 10.4 0.9 1.7 1 1 0 1 1 1 0 Malic enzyme, NAD binding domain GIDA PF01134.17 gi|336255346|ref|YP_004598453.1| - 0.27 10.0 1.3 0.54 9.0 0.5 1.6 2 0 0 2 2 2 0 Glucose inhibited division protein A ThiF PF00899.16 gi|336255346|ref|YP_004598453.1| - 0.81 9.5 4.5 2.1 8.1 1.8 2.2 1 1 1 2 2 2 0 ThiF family HHH_5 PF14520.1 gi|336255347|ref|YP_004598454.1| - 8.6e-10 38.6 1.2 1.8e-09 37.6 0.8 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix domain DUF4332 PF14229.1 gi|336255347|ref|YP_004598454.1| - 1.1e-05 25.4 0.0 4e-05 23.5 0.0 1.8 1 1 1 2 2 2 1 Domain of unknown function (DUF4332) DNA_pol_lambd_f PF10391.4 gi|336255347|ref|YP_004598454.1| - 0.0014 18.1 0.0 0.0022 17.4 0.0 1.2 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda Cdd1 PF11731.3 gi|336255347|ref|YP_004598454.1| - 0.0036 17.1 0.0 0.0054 16.6 0.0 1.3 1 0 0 1 1 1 1 Pathogenicity locus Trypan_PARP PF05887.6 gi|336255347|ref|YP_004598454.1| - 0.0062 16.3 38.9 0.0062 16.3 27.0 2.4 1 1 1 2 2 2 1 Procyclic acidic repetitive protein (PARP) Chorismate_bind PF00425.13 gi|336255348|ref|YP_004598455.1| - 8.9e-101 336.5 0.0 1.2e-100 336.0 0.0 1.2 1 0 0 1 1 1 1 chorismate binding enzyme Anth_synt_I_N PF04715.8 gi|336255348|ref|YP_004598455.1| - 4.4e-16 59.1 0.1 3.8e-15 56.1 0.0 2.4 3 0 0 3 3 3 1 Anthranilate synthase component I, N terminal region GATase PF00117.23 gi|336255349|ref|YP_004598456.1| - 2.6e-42 144.4 0.1 9.5e-42 142.6 0.1 1.7 1 1 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|336255349|ref|YP_004598456.1| - 2.3e-10 40.2 0.0 3.9e-10 39.5 0.0 1.3 1 0 0 1 1 1 1 Peptidase C26 Aminotran_4 PF01063.14 gi|336255350|ref|YP_004598457.1| - 1.5e-47 161.9 0.0 1.9e-47 161.7 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class IV N6-adenineMlase PF10237.4 gi|336255351|ref|YP_004598458.1| - 0.0051 16.4 0.0 0.033 13.8 0.0 1.9 1 1 1 2 2 2 2 Probable N6-adenine methyltransferase Saccharop_dh PF03435.13 gi|336255352|ref|YP_004598459.1| - 5.6e-20 71.6 0.0 1.2e-19 70.6 0.0 1.5 1 1 0 1 1 1 1 Saccharopine dehydrogenase NAD_binding_10 PF13460.1 gi|336255352|ref|YP_004598459.1| - 1.9e-09 37.8 1.2 2.8e-09 37.2 0.1 1.8 2 0 0 2 2 2 1 NADH(P)-binding Rieske PF00355.21 gi|336255353|ref|YP_004598460.1| - 7e-05 22.3 0.1 0.0001 21.7 0.1 1.3 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain HTH_20 PF12840.2 gi|336255354|ref|YP_004598461.1| - 0.018 14.8 1.9 12 5.7 0.1 3.0 2 1 1 3 3 3 0 Helix-turn-helix domain HTH_20 PF12840.2 gi|336255355|ref|YP_004598462.1| - 7.8e-07 28.8 0.5 1.3e-06 28.1 0.3 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|336255355|ref|YP_004598462.1| - 0.00091 18.8 0.0 0.0014 18.2 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|336255355|ref|YP_004598462.1| - 0.0091 15.3 0.0 0.015 14.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|336255355|ref|YP_004598462.1| - 0.015 14.9 0.2 0.021 14.4 0.1 1.3 1 0 0 1 1 1 0 MarR family Sigma70_r3 PF04539.11 gi|336255355|ref|YP_004598462.1| - 0.04 13.7 0.2 0.059 13.2 0.1 1.2 1 0 0 1 1 1 0 Sigma-70 region 3 Zn-ribbon_8 PF09723.5 gi|336255355|ref|YP_004598462.1| - 0.16 11.9 3.4 0.38 10.7 2.3 1.7 1 1 0 1 1 1 0 Zinc ribbon domain zf-trcl PF13451.1 gi|336255355|ref|YP_004598462.1| - 0.83 9.3 7.6 0.27 10.8 0.6 2.2 1 1 1 2 2 2 0 Probable zinc-binding domain NTP_transferase PF00483.18 gi|336255356|ref|YP_004598463.1| - 3e-37 128.2 0.0 4.1e-37 127.8 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|336255356|ref|YP_004598463.1| - 2e-13 50.7 0.0 2.1e-13 50.6 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.19 gi|336255356|ref|YP_004598463.1| - 0.00095 18.5 2.7 0.034 13.6 0.0 3.3 4 0 0 4 4 4 1 Bacterial transferase hexapeptide (six repeats) IspD PF01128.14 gi|336255356|ref|YP_004598463.1| - 0.021 14.3 0.0 0.035 13.6 0.0 1.4 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase HATPase_c PF02518.21 gi|336255357|ref|YP_004598464.1| - 2.8e-21 75.3 0.1 5.5e-21 74.3 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.19 gi|336255357|ref|YP_004598464.1| - 1.7e-19 69.8 0.0 3.9e-19 68.7 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain GAF_2 PF13185.1 gi|336255357|ref|YP_004598464.1| - 9.5e-18 65.1 3.4 1.3e-09 38.7 0.1 2.9 2 0 0 2 2 2 2 GAF domain GAF_3 PF13492.1 gi|336255357|ref|YP_004598464.1| - 6.4e-15 55.3 0.5 3.4e-07 30.4 0.0 2.7 2 0 0 2 2 2 2 GAF domain PAS_9 PF13426.1 gi|336255357|ref|YP_004598464.1| - 3.5e-14 53.0 0.0 1.2e-13 51.3 0.0 2.0 2 0 0 2 2 2 1 PAS domain HisKA PF00512.20 gi|336255357|ref|YP_004598464.1| - 8.9e-12 44.8 3.6 1.1e-11 44.5 0.3 2.8 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.5 gi|336255357|ref|YP_004598464.1| - 3e-09 36.8 1.0 1.6e-08 34.5 0.1 2.8 2 0 0 2 2 2 1 PAS fold PAS PF00989.19 gi|336255357|ref|YP_004598464.1| - 1.5e-08 34.4 0.0 3.6e-08 33.1 0.0 1.7 1 0 0 1 1 1 1 PAS fold GAF PF01590.21 gi|336255357|ref|YP_004598464.1| - 1.3e-07 31.8 4.2 5.8e-05 23.2 0.1 3.5 4 1 0 4 4 4 2 GAF domain PAS_8 PF13188.1 gi|336255357|ref|YP_004598464.1| - 4.9e-07 29.3 0.0 3.1e-06 26.8 0.0 2.5 1 0 0 1 1 1 1 PAS domain DUF2930 PF11152.3 gi|336255357|ref|YP_004598464.1| - 0.00015 20.9 0.0 0.00067 18.8 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF2930) HATPase_c_3 PF13589.1 gi|336255357|ref|YP_004598464.1| - 0.0044 16.6 0.0 0.01 15.4 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.6 gi|336255357|ref|YP_004598464.1| - 0.018 15.1 0.0 0.049 13.7 0.0 1.8 1 0 0 1 1 1 0 PAS fold PAS_7 PF12860.2 gi|336255357|ref|YP_004598464.1| - 0.022 14.7 0.0 0.14 12.1 0.0 2.5 2 0 0 2 2 2 0 PAS fold Synaptobrevin PF00957.16 gi|336255357|ref|YP_004598464.1| - 0.036 13.6 1.7 3.1 7.4 0.1 2.4 2 0 0 2 2 2 0 Synaptobrevin ThiS PF02597.15 gi|336255358|ref|YP_004598465.1| - 9e-11 42.0 0.0 9.9e-11 41.9 0.0 1.0 1 0 0 1 1 1 1 ThiS family DUF162 PF02589.10 gi|336255359|ref|YP_004598466.1| - 2.3e-43 147.9 0.4 3.7e-43 147.2 0.3 1.4 1 0 0 1 1 1 1 Uncharacterised ACR, YkgG family COG1556 Fer4_8 PF13183.1 gi|336255359|ref|YP_004598466.1| - 9e-09 35.2 5.4 1.8e-08 34.2 3.7 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|336255359|ref|YP_004598466.1| - 1.6e-07 31.6 5.6 4e-05 23.9 0.6 2.6 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|336255359|ref|YP_004598466.1| - 1.4e-06 28.4 4.2 2.8e-06 27.5 2.9 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|336255359|ref|YP_004598466.1| - 2.3e-05 24.6 7.2 5.5e-05 23.4 5.0 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|336255359|ref|YP_004598466.1| - 8.7e-05 22.7 10.0 0.0012 19.0 7.3 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|336255359|ref|YP_004598466.1| - 0.00015 21.4 10.5 0.011 15.4 1.5 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|336255359|ref|YP_004598466.1| - 0.00029 20.2 13.0 0.00094 18.6 1.5 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|336255359|ref|YP_004598466.1| - 0.00033 20.4 9.9 0.0018 18.0 6.9 2.1 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|336255359|ref|YP_004598466.1| - 0.002 17.8 12.4 0.0073 16.1 1.6 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_2 PF12797.2 gi|336255359|ref|YP_004598466.1| - 0.0074 16.1 11.8 0.081 12.8 1.8 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|336255359|ref|YP_004598466.1| - 0.016 15.4 15.1 0.096 13.0 3.0 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_20 PF14691.1 gi|336255359|ref|YP_004598466.1| - 0.052 13.1 3.3 0.054 13.1 0.1 2.2 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_15 PF13459.1 gi|336255359|ref|YP_004598466.1| - 0.45 11.1 5.5 1.3 9.6 0.1 3.5 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|336255359|ref|YP_004598466.1| - 0.48 11.1 17.0 0.12 13.0 3.3 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|336255359|ref|YP_004598466.1| - 2.2 9.0 12.8 5.4 7.8 2.3 2.3 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain DUF162 PF02589.10 gi|336255360|ref|YP_004598467.1| - 1.6e-23 83.2 0.3 7.4e-23 81.0 0.2 1.8 1 1 0 1 1 1 1 Uncharacterised ACR, YkgG family COG1556 IclR PF01614.13 gi|336255361|ref|YP_004598468.1| - 2.2e-40 137.3 0.0 3.3e-40 136.7 0.0 1.3 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|336255361|ref|YP_004598468.1| - 5.6e-10 38.6 1.2 4.5e-09 35.7 0.3 2.5 3 0 0 3 3 2 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|336255361|ref|YP_004598468.1| - 9.7e-07 28.5 0.2 2.6e-06 27.1 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|336255361|ref|YP_004598468.1| - 5.6e-06 25.9 0.0 1.6e-05 24.4 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|336255361|ref|YP_004598468.1| - 5.1e-05 22.5 0.0 0.00011 21.4 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|336255361|ref|YP_004598468.1| - 0.00012 21.6 0.1 0.00072 19.1 0.0 2.1 2 0 0 2 2 2 1 MarR family TrmB PF01978.14 gi|336255361|ref|YP_004598468.1| - 0.00014 21.4 0.1 0.0018 17.9 0.0 2.3 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|336255361|ref|YP_004598468.1| - 0.0002 21.5 0.2 0.0048 17.1 0.0 2.5 2 0 0 2 2 2 1 Winged helix DNA-binding domain MarR PF01047.17 gi|336255361|ref|YP_004598468.1| - 0.00021 20.9 0.1 0.00074 19.1 0.0 1.9 2 0 0 2 2 2 1 MarR family DUF742 PF05331.6 gi|336255361|ref|YP_004598468.1| - 0.0032 17.0 0.0 0.0075 15.8 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF742) HTH_40 PF14493.1 gi|336255361|ref|YP_004598468.1| - 0.006 16.7 0.3 0.02 15.1 0.1 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_38 PF13936.1 gi|336255361|ref|YP_004598468.1| - 0.0062 16.0 0.1 0.076 12.5 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_34 PF13601.1 gi|336255361|ref|YP_004598468.1| - 0.014 15.4 0.0 0.14 12.2 0.0 2.3 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_10 PF04967.7 gi|336255361|ref|YP_004598468.1| - 0.015 14.8 0.2 0.049 13.2 0.0 1.9 2 0 0 2 2 2 0 HTH DNA binding domain GAF_2 PF13185.1 gi|336255361|ref|YP_004598468.1| - 0.016 15.6 0.1 0.081 13.4 0.0 2.0 1 1 0 2 2 2 0 GAF domain Fe_dep_repress PF01325.14 gi|336255361|ref|YP_004598468.1| - 0.017 15.0 0.0 0.046 13.6 0.0 1.7 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_11 PF08279.7 gi|336255361|ref|YP_004598468.1| - 0.021 14.4 0.1 0.26 10.9 0.0 2.6 2 1 0 2 2 2 0 HTH domain Sigma70_r4_2 PF08281.7 gi|336255361|ref|YP_004598468.1| - 0.024 14.0 0.0 0.067 12.6 0.0 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_23 PF13384.1 gi|336255361|ref|YP_004598468.1| - 0.03 13.9 0.0 1.1 8.9 0.0 2.5 2 0 0 2 2 2 0 Homeodomain-like domain TetR_N PF00440.18 gi|336255361|ref|YP_004598468.1| - 0.062 12.9 0.1 3.3 7.4 0.0 3.1 2 1 1 3 3 3 0 Bacterial regulatory proteins, tetR family Usp PF00582.21 gi|336255362|ref|YP_004598469.1| - 6.1e-23 81.5 1.1 6.7e-23 81.4 0.8 1.0 1 0 0 1 1 1 1 Universal stress protein family Glyco_hydro_2_N PF02837.13 gi|336255363|ref|YP_004598470.1| - 1.8e-35 121.9 0.0 3.2e-35 121.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl hydrolases family 2, sugar binding domain Glyco_hydro_2_C PF02836.12 gi|336255363|ref|YP_004598470.1| - 3e-14 52.6 0.0 6.7e-14 51.4 0.0 1.5 1 0 0 1 1 1 1 Glycosyl hydrolases family 2, TIM barrel domain Glyco_hydro_2 PF00703.16 gi|336255363|ref|YP_004598470.1| - 3.8e-13 49.8 3.2 5.5e-13 49.3 0.0 2.7 3 0 0 3 3 3 1 Glycosyl hydrolases family 2 Cadherin-like PF12733.2 gi|336255363|ref|YP_004598470.1| - 0.0047 17.1 5.1 0.28 11.5 0.0 3.1 3 0 0 3 3 3 2 Cadherin-like beta sandwich domain CIDE-N PF02017.10 gi|336255363|ref|YP_004598470.1| - 0.12 12.1 0.0 0.38 10.5 0.0 1.8 1 0 0 1 1 1 0 CIDE-N domain ABC_tran PF00005.22 gi|336255364|ref|YP_004598471.1| - 7.1e-32 110.5 0.0 1.2e-31 109.8 0.0 1.4 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.5 gi|336255364|ref|YP_004598471.1| - 1.4e-14 53.7 0.1 3.6e-14 52.5 0.1 1.8 1 0 0 1 1 1 1 TOBE domain AAA_21 PF13304.1 gi|336255364|ref|YP_004598471.1| - 2.7e-10 40.7 0.1 0.00063 19.7 0.0 2.2 1 1 0 2 2 2 2 AAA domain TOBE PF03459.12 gi|336255364|ref|YP_004598471.1| - 5.1e-09 36.1 0.1 3.4e-08 33.4 0.1 2.5 2 0 0 2 2 1 1 TOBE domain DUF258 PF03193.11 gi|336255364|ref|YP_004598471.1| - 0.00011 21.4 0.0 0.00021 20.5 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_15 PF13175.1 gi|336255364|ref|YP_004598471.1| - 0.00015 20.9 0.3 0.086 11.8 0.0 2.1 1 1 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|336255364|ref|YP_004598471.1| - 0.00048 19.5 0.0 0.001 18.5 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|336255364|ref|YP_004598471.1| - 0.00059 19.1 0.6 0.0038 16.4 0.4 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_17 PF13207.1 gi|336255364|ref|YP_004598471.1| - 0.00064 20.5 0.1 0.0024 18.6 0.0 2.1 3 0 0 3 3 1 1 AAA domain AAA_22 PF13401.1 gi|336255364|ref|YP_004598471.1| - 0.0012 19.0 0.1 0.0034 17.5 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|336255364|ref|YP_004598471.1| - 0.0012 19.2 0.1 0.0038 17.5 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|336255364|ref|YP_004598471.1| - 0.002 17.6 0.0 0.005 16.3 0.0 1.6 1 0 0 1 1 1 1 AAA-like domain AAA_16 PF13191.1 gi|336255364|ref|YP_004598471.1| - 0.0023 17.9 0.1 0.0055 16.7 0.0 1.6 2 0 0 2 2 2 1 AAA ATPase domain AAA_25 PF13481.1 gi|336255364|ref|YP_004598471.1| - 0.0033 16.8 0.1 0.04 13.3 0.0 2.6 3 1 0 3 3 3 1 AAA domain AAA_18 PF13238.1 gi|336255364|ref|YP_004598471.1| - 0.0063 16.8 0.8 0.018 15.3 0.5 2.1 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|336255364|ref|YP_004598471.1| - 0.0073 16.1 0.1 0.017 14.9 0.1 1.6 1 0 0 1 1 1 1 AAA domain MobB PF03205.9 gi|336255364|ref|YP_004598471.1| - 0.01 15.5 0.1 0.02 14.6 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B NACHT PF05729.7 gi|336255364|ref|YP_004598471.1| - 0.015 14.9 0.0 0.033 13.8 0.0 1.5 1 0 0 1 1 1 0 NACHT domain Arch_ATPase PF01637.13 gi|336255364|ref|YP_004598471.1| - 0.036 13.7 0.0 0.068 12.8 0.0 1.4 1 0 0 1 1 1 0 Archaeal ATPase Miro PF08477.8 gi|336255364|ref|YP_004598471.1| - 0.05 14.0 0.1 0.17 12.4 0.0 2.0 2 0 0 2 2 1 0 Miro-like protein NB-ARC PF00931.17 gi|336255364|ref|YP_004598471.1| - 0.074 11.8 0.0 0.12 11.2 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain MMR_HSR1 PF01926.18 gi|336255364|ref|YP_004598471.1| - 0.11 12.4 0.0 0.23 11.4 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_19 PF13245.1 gi|336255364|ref|YP_004598471.1| - 0.15 11.8 0.1 0.4 10.4 0.0 1.7 2 0 0 2 2 1 0 Part of AAA domain Adeno_IVa2 PF02456.10 gi|336255364|ref|YP_004598471.1| - 0.17 10.5 0.0 0.25 9.9 0.0 1.2 1 0 0 1 1 1 0 Adenovirus IVa2 protein DUF624 PF04854.9 gi|336255365|ref|YP_004598472.1| - 1.3e-05 24.9 0.1 1.3e-05 24.9 0.1 2.5 2 1 1 3 3 3 1 Protein of unknown function, DUF624 Cg6151-P PF10233.4 gi|336255365|ref|YP_004598472.1| - 0.024 14.6 6.1 0.028 14.3 2.8 1.9 1 1 1 2 2 2 0 Uncharacterized conserved protein CG6151-P BPD_transp_1 PF00528.17 gi|336255366|ref|YP_004598473.1| - 2e-17 63.2 17.7 2e-17 63.2 12.3 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF3341 PF11821.3 gi|336255366|ref|YP_004598473.1| - 0.33 10.4 0.0 0.33 10.4 0.0 2.4 3 0 0 3 3 3 0 Protein of unknown function (DUF3341) BPD_transp_1 PF00528.17 gi|336255367|ref|YP_004598474.1| - 3.5e-18 65.7 19.5 3.5e-18 65.7 13.5 2.1 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_8 PF13416.1 gi|336255368|ref|YP_004598475.1| - 4.6e-22 79.0 0.0 8.6e-22 78.1 0.0 1.4 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|336255368|ref|YP_004598475.1| - 3.8e-16 59.7 0.0 6.6e-16 58.9 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.4 gi|336255368|ref|YP_004598475.1| - 0.029 14.3 2.2 0.052 13.5 1.5 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence adh_short_C2 PF13561.1 gi|336255369|ref|YP_004598476.1| - 3.2e-36 125.3 0.1 3.7e-36 125.1 0.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|336255369|ref|YP_004598476.1| - 2.7e-33 115.2 4.5 3.3e-33 114.9 3.1 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|336255369|ref|YP_004598476.1| - 4.1e-19 68.9 1.9 5.4e-19 68.5 1.3 1.1 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.1 gi|336255369|ref|YP_004598476.1| - 9.4e-09 35.5 1.5 1.5e-08 34.8 1.0 1.2 1 0 0 1 1 1 1 NADH(P)-binding ADH_zinc_N PF00107.21 gi|336255369|ref|YP_004598476.1| - 0.0061 16.1 0.6 0.013 15.0 0.4 1.6 1 0 0 1 1 1 1 Zinc-binding dehydrogenase NmrA PF05368.8 gi|336255369|ref|YP_004598476.1| - 0.016 14.5 0.5 0.023 13.9 0.3 1.2 1 0 0 1 1 1 0 NmrA-like family Epimerase PF01370.16 gi|336255369|ref|YP_004598476.1| - 0.016 14.6 0.2 0.025 13.9 0.1 1.4 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family THF_DHG_CYH_C PF02882.14 gi|336255369|ref|YP_004598476.1| - 0.023 13.7 0.9 0.12 11.4 0.6 2.1 1 1 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Eno-Rase_NADH_b PF12242.3 gi|336255369|ref|YP_004598476.1| - 0.026 14.3 0.4 0.072 12.8 0.2 1.7 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase Dak1_2 PF13684.1 gi|336255369|ref|YP_004598476.1| - 0.034 13.0 0.5 0.086 11.7 0.3 1.6 1 1 1 2 2 2 0 Dihydroxyacetone kinase family TrkA_N PF02254.13 gi|336255369|ref|YP_004598476.1| - 0.061 13.3 0.3 0.18 11.7 0.2 1.8 1 0 0 1 1 1 0 TrkA-N domain 2-Hacid_dh_C PF02826.14 gi|336255369|ref|YP_004598476.1| - 0.093 11.8 0.3 0.24 10.5 0.1 1.7 1 1 1 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.13 gi|336255369|ref|YP_004598476.1| - 0.095 12.3 0.8 0.17 11.5 0.5 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.11 gi|336255369|ref|YP_004598476.1| - 0.11 11.9 0.1 0.18 11.2 0.1 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA GFO_IDH_MocA PF01408.17 gi|336255370|ref|YP_004598477.1| - 1.4e-18 67.4 0.1 6.1e-18 65.4 0.0 1.9 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|336255370|ref|YP_004598477.1| - 0.0017 18.0 0.0 0.0054 16.5 0.0 1.9 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain Semialdhyde_dh PF01118.19 gi|336255370|ref|YP_004598477.1| - 0.0025 18.0 0.0 0.007 16.6 0.0 1.9 1 1 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Acetyltransf_1 PF00583.19 gi|336255371|ref|YP_004598478.1| - 8.4e-13 48.1 0.1 1.3e-12 47.6 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|336255371|ref|YP_004598478.1| - 1.4e-08 34.7 0.0 2e-08 34.2 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|336255371|ref|YP_004598478.1| - 7.8e-08 32.4 0.0 9e-08 32.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|336255371|ref|YP_004598478.1| - 4.9e-07 29.9 0.0 6e-07 29.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|336255371|ref|YP_004598478.1| - 1.1e-06 28.7 0.0 1.2e-06 28.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|336255371|ref|YP_004598478.1| - 1.5e-06 28.1 0.0 1.7e-05 24.7 0.0 2.1 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|336255371|ref|YP_004598478.1| - 0.008 16.0 0.0 0.012 15.4 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|336255371|ref|YP_004598478.1| - 0.037 13.7 0.0 0.061 13.0 0.0 1.3 1 0 0 1 1 1 0 FR47-like protein Cation_efflux PF01545.16 gi|336255372|ref|YP_004598479.1| - 7.6e-63 212.2 8.7 9.3e-63 211.9 6.0 1.0 1 0 0 1 1 1 1 Cation efflux family PadR PF03551.9 gi|336255373|ref|YP_004598480.1| - 8.5e-17 60.7 0.7 1.1e-16 60.3 0.5 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|336255373|ref|YP_004598480.1| - 0.00012 22.3 0.1 0.0002 21.6 0.0 1.4 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|336255373|ref|YP_004598480.1| - 0.004 16.9 0.1 0.0058 16.4 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix MarR_2 PF12802.2 gi|336255373|ref|YP_004598480.1| - 0.033 13.8 0.5 1.1 8.9 0.1 2.7 2 1 0 2 2 2 0 MarR family HTH_34 PF13601.1 gi|336255373|ref|YP_004598480.1| - 0.042 13.8 0.0 0.053 13.5 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF1495 PF07381.6 gi|336255373|ref|YP_004598480.1| - 0.063 12.9 0.0 0.097 12.3 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) SprT-like PF10263.4 gi|336255374|ref|YP_004598481.1| - 1e-19 70.7 1.3 1.5e-19 70.2 0.9 1.2 1 0 0 1 1 1 1 SprT-like family Peptidase_MA_2 PF13485.1 gi|336255374|ref|YP_004598481.1| - 0.0027 17.7 0.1 0.0038 17.2 0.1 1.3 1 0 0 1 1 1 1 Peptidase MA superfamily DBD_Tnp_Mut PF03108.10 gi|336255374|ref|YP_004598481.1| - 0.0049 16.4 0.2 0.015 14.8 0.2 1.8 1 0 0 1 1 1 1 MuDR family transposase BSP PF04450.7 gi|336255374|ref|YP_004598481.1| - 0.052 13.0 0.0 0.076 12.4 0.0 1.3 1 0 0 1 1 1 0 Peptidase of plants and bacteria DsbB PF02600.11 gi|336255376|ref|YP_004598483.1| - 0.24 11.1 1.2 0.28 10.9 0.8 1.0 1 0 0 1 1 1 0 Disulfide bond formation protein DsbB DUF4282 PF14110.1 gi|336255376|ref|YP_004598483.1| - 0.68 10.1 3.4 0.77 9.9 2.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4282) HAD_2 PF13419.1 gi|336255377|ref|YP_004598484.1| - 4.6e-31 108.3 0.1 5.4e-31 108.1 0.0 1.0 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|336255377|ref|YP_004598484.1| - 5.2e-11 42.0 0.1 1.1e-10 41.1 0.1 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|336255377|ref|YP_004598484.1| - 2.2e-10 41.2 0.1 5.2e-09 36.8 0.1 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|336255377|ref|YP_004598484.1| - 0.00078 19.6 0.0 0.00093 19.4 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase PGP_phosphatase PF09419.5 gi|336255377|ref|YP_004598484.1| - 0.0026 17.1 0.0 0.023 14.0 0.0 2.0 2 0 0 2 2 2 1 Mitochondrial PGP phosphatase NIF PF03031.13 gi|336255377|ref|YP_004598484.1| - 0.0042 16.7 0.0 0.027 14.1 0.0 1.9 2 0 0 2 2 2 1 NLI interacting factor-like phosphatase Hydrolase_6 PF13344.1 gi|336255377|ref|YP_004598484.1| - 0.017 14.9 0.0 0.033 14.0 0.0 1.4 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase DHQS PF01959.11 gi|336255378|ref|YP_004598485.1| - 3.1e-146 486.5 6.0 3.8e-146 486.3 4.1 1.1 1 0 0 1 1 1 1 3-dehydroquinate synthase (EC 4.6.1.3) QRPTase_C PF01729.14 gi|336255378|ref|YP_004598485.1| - 5.1e-05 22.8 2.2 0.024 14.1 0.1 2.7 2 0 0 2 2 2 2 Quinolinate phosphoribosyl transferase, C-terminal domain Hint PF01079.15 gi|336255378|ref|YP_004598485.1| - 0.00047 19.4 0.1 0.0052 16.0 0.0 2.3 3 0 0 3 3 3 1 Hint module Response_reg PF00072.19 gi|336255378|ref|YP_004598485.1| - 0.013 15.4 0.1 0.69 9.9 0.0 3.2 3 0 0 3 3 3 0 Response regulator receiver domain Hint_2 PF13403.1 gi|336255378|ref|YP_004598485.1| - 0.019 14.9 3.5 2.8 7.8 0.0 3.5 5 1 0 5 5 5 0 Hint domain zf-ribbon_3 PF13248.1 gi|336255379|ref|YP_004598486.1| - 6.7e-07 28.3 0.6 9.8e-07 27.8 0.4 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|336255379|ref|YP_004598486.1| - 5.5e-05 22.9 1.3 8e-05 22.3 0.9 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|336255379|ref|YP_004598486.1| - 0.00011 21.5 0.7 0.00015 21.0 0.5 1.2 1 0 0 1 1 1 1 zinc-ribbon domain UPF0547 PF10571.4 gi|336255379|ref|YP_004598486.1| - 0.008 15.8 0.5 0.013 15.1 0.3 1.3 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 Prok-RING_1 PF14446.1 gi|336255379|ref|YP_004598486.1| - 0.016 14.9 0.7 0.024 14.3 0.5 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zf-RING_3 PF14369.1 gi|336255379|ref|YP_004598486.1| - 0.023 14.6 3.3 2.8 7.9 0.2 2.3 2 0 0 2 2 2 0 zinc-finger DUF2476 PF10630.4 gi|336255379|ref|YP_004598486.1| - 0.056 13.3 0.0 0.089 12.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2476) Nudix_N_2 PF14803.1 gi|336255379|ref|YP_004598486.1| - 0.1 12.2 0.7 12 5.7 0.0 2.2 2 0 0 2 2 2 0 Nudix N-terminal YhfH PF14149.1 gi|336255379|ref|YP_004598486.1| - 0.15 11.9 1.7 0.25 11.1 1.2 1.3 1 0 0 1 1 1 0 YhfH-like protein TM2 PF05154.11 gi|336255379|ref|YP_004598486.1| - 0.4 10.9 4.6 0.1 12.8 0.8 1.7 2 0 0 2 2 2 0 TM2 domain DHquinase_I PF01487.10 gi|336255381|ref|YP_004598488.1| - 2.1e-49 168.1 0.0 2.5e-49 167.9 0.0 1.0 1 0 0 1 1 1 1 Type I 3-dehydroquinase Polysacc_deac_2 PF04748.8 gi|336255381|ref|YP_004598488.1| - 0.008 15.2 0.5 0.013 14.5 0.3 1.4 1 0 0 1 1 1 1 Divergent polysaccharide deacetylase DRTGG PF07085.7 gi|336255381|ref|YP_004598488.1| - 0.025 14.2 0.1 1.2 8.8 0.0 2.8 2 1 0 3 3 3 0 DRTGG domain TFIIB PF00382.14 gi|336255382|ref|YP_004598489.1| - 4.7e-42 141.6 0.7 2.6e-22 78.4 0.0 2.4 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|336255382|ref|YP_004598489.1| - 1.4e-15 56.3 5.3 1.4e-15 56.3 3.7 2.3 2 1 1 3 3 3 2 TFIIB zinc-binding A2L_zn_ribbon PF08792.5 gi|336255382|ref|YP_004598489.1| - 0.0051 16.2 1.0 0.0094 15.3 0.7 1.4 1 0 0 1 1 1 1 A2L zinc ribbon domain Sigma70_r4 PF04545.11 gi|336255382|ref|YP_004598489.1| - 0.017 14.4 0.1 1.3 8.3 0.0 3.5 3 0 0 3 3 3 0 Sigma-70, region 4 Rubredoxin PF00301.15 gi|336255382|ref|YP_004598489.1| - 0.084 12.7 0.8 15 5.5 0.1 2.5 2 0 0 2 2 2 0 Rubredoxin Cyclin_N PF00134.18 gi|336255382|ref|YP_004598489.1| - 0.12 11.8 0.0 0.7 9.4 0.0 2.0 2 0 0 2 2 2 0 Cyclin, N-terminal domain Trm112p PF03966.11 gi|336255382|ref|YP_004598489.1| - 2 8.8 5.2 7.3 7.0 2.2 2.7 2 1 0 2 2 2 0 Trm112p-like protein NTPase_I-T PF01931.13 gi|336255383|ref|YP_004598490.1| - 3.1e-37 127.8 0.0 3.5e-37 127.7 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF84 REGB_T4 PF10715.4 gi|336255383|ref|YP_004598490.1| - 0.026 14.6 0.0 0.048 13.7 0.0 1.4 1 0 0 1 1 1 0 Endoribonuclease RegB T4-bacteriophage encoded DUF3359 PF11839.3 gi|336255383|ref|YP_004598490.1| - 0.059 13.7 0.0 0.11 12.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3359) LexA_DNA_bind PF01726.11 gi|336255384|ref|YP_004598491.1| - 0.013 15.0 0.0 0.019 14.5 0.0 1.3 1 0 0 1 1 1 0 LexA DNA binding domain HTH_24 PF13412.1 gi|336255384|ref|YP_004598491.1| - 0.053 12.9 0.4 1.9 7.9 0.0 2.8 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding ENT PF03735.9 gi|336255384|ref|YP_004598491.1| - 0.086 12.5 0.0 0.1 12.3 0.0 1.1 1 0 0 1 1 1 0 ENT domain HAD_2 PF13419.1 gi|336255385|ref|YP_004598492.1| - 1.4e-11 44.9 0.0 3.5e-11 43.6 0.0 1.6 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|336255385|ref|YP_004598492.1| - 9.4e-07 29.4 0.0 6.8e-05 23.3 0.0 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|336255385|ref|YP_004598492.1| - 8.6e-05 22.1 0.0 0.00022 20.8 0.0 1.7 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase_6 PF13344.1 gi|336255385|ref|YP_004598492.1| - 0.022 14.6 0.0 2.7 7.9 0.0 2.2 2 0 0 2 2 2 0 Haloacid dehalogenase-like hydrolase HTH_20 PF12840.2 gi|336255386|ref|YP_004598493.1| - 6.7e-12 45.0 0.2 4.8e-06 26.2 0.0 2.4 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_34 PF13601.1 gi|336255386|ref|YP_004598493.1| - 1e-09 38.2 0.0 0.0012 18.8 0.0 2.2 2 0 0 2 2 2 2 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|336255386|ref|YP_004598493.1| - 2.1e-09 36.9 0.0 4.9e-06 26.1 0.0 2.3 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|336255386|ref|YP_004598493.1| - 1.8e-08 33.9 0.0 6.5e-05 22.5 0.0 2.3 2 0 0 2 2 2 2 MarR family MarR_2 PF12802.2 gi|336255386|ref|YP_004598493.1| - 4.4e-08 32.6 0.4 6.2e-07 28.9 0.0 2.5 2 1 0 2 2 2 1 MarR family HTH_24 PF13412.1 gi|336255386|ref|YP_004598493.1| - 5.9e-07 28.7 0.0 1.8e-05 24.0 0.0 2.4 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|336255386|ref|YP_004598493.1| - 4.1e-06 26.4 0.0 0.00092 18.8 0.0 2.2 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.14 gi|336255386|ref|YP_004598493.1| - 5.9e-05 22.9 0.0 0.00012 21.9 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_Crp_2 PF13545.1 gi|336255386|ref|YP_004598493.1| - 0.00015 21.4 0.0 0.0018 18.0 0.0 2.5 3 0 0 3 3 3 1 Crp-like helix-turn-helix domain HTH_11 PF08279.7 gi|336255386|ref|YP_004598493.1| - 0.00026 20.5 0.0 0.00049 19.6 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_IclR PF09339.5 gi|336255386|ref|YP_004598493.1| - 0.00052 19.5 0.9 0.0032 17.0 0.1 2.6 2 1 0 2 2 2 1 IclR helix-turn-helix domain DUF4423 PF14394.1 gi|336255386|ref|YP_004598493.1| - 0.0015 18.1 0.0 1.2 8.6 0.0 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF4423) HTH_27 PF13463.1 gi|336255386|ref|YP_004598493.1| - 0.0035 17.6 0.3 0.021 15.1 0.0 2.3 2 1 0 2 2 2 1 Winged helix DNA-binding domain DUF2250 PF10007.4 gi|336255386|ref|YP_004598493.1| - 0.0064 16.3 0.0 0.074 12.9 0.0 2.2 2 1 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) GntR PF00392.16 gi|336255386|ref|YP_004598493.1| - 0.02 14.3 0.0 0.067 12.6 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_36 PF13730.1 gi|336255386|ref|YP_004598493.1| - 0.027 14.6 0.0 0.06 13.4 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|336255386|ref|YP_004598493.1| - 0.04 13.4 0.0 0.12 11.9 0.0 2.0 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_10 PF04967.7 gi|336255386|ref|YP_004598493.1| - 0.12 11.9 0.1 1.2 8.7 0.0 2.3 2 0 0 2 2 2 0 HTH DNA binding domain Band_7 PF01145.20 gi|336255387|ref|YP_004598494.1| - 9.9e-38 129.8 4.3 9.9e-38 129.8 3.0 2.1 3 0 0 3 3 3 1 SPFH domain / Band 7 family Band_7_1 PF13421.1 gi|336255387|ref|YP_004598494.1| - 0.00014 21.4 0.1 0.00031 20.3 0.1 1.6 1 0 0 1 1 1 1 SPFH domain-Band 7 family YkyA PF10368.4 gi|336255387|ref|YP_004598494.1| - 1.7 7.9 11.7 0.049 12.9 3.3 1.9 2 0 0 2 2 2 0 Putative cell-wall binding lipoprotein NfeD PF01957.13 gi|336255388|ref|YP_004598495.1| - 5.1e-11 42.9 1.8 7.2e-11 42.4 1.2 1.1 1 0 0 1 1 1 1 NfeD-like C-terminal, partner-binding DUF867 PF05908.6 gi|336255389|ref|YP_004598496.1| - 8.3e-17 60.9 0.0 1e-16 60.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF867) DeoC PF01791.4 gi|336255390|ref|YP_004598497.1| - 2.9e-43 147.8 0.1 3.5e-43 147.5 0.1 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase AP_endonuc_2 PF01261.19 gi|336255390|ref|YP_004598497.1| - 4.4e-05 22.8 0.0 6.6e-05 22.2 0.0 1.3 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel URO-D PF01208.12 gi|336255390|ref|YP_004598497.1| - 0.02 13.8 0.0 0.079 11.8 0.0 1.8 1 1 1 2 2 2 0 Uroporphyrinogen decarboxylase (URO-D) OMPdecase PF00215.19 gi|336255390|ref|YP_004598497.1| - 0.052 12.9 0.7 0.12 11.7 0.3 1.9 1 1 0 1 1 1 0 Orotidine 5'-phosphate decarboxylase / HUMPS family Trp_syntA PF00290.15 gi|336255391|ref|YP_004598498.1| - 6e-87 290.4 0.0 6.9e-87 290.2 0.0 1.0 1 0 0 1 1 1 1 Tryptophan synthase alpha chain PcrB PF01884.12 gi|336255391|ref|YP_004598498.1| - 0.00041 19.6 0.8 0.0028 16.9 0.3 2.2 2 1 0 2 2 2 1 PcrB family His_biosynth PF00977.16 gi|336255391|ref|YP_004598498.1| - 0.00049 19.4 0.1 0.001 18.3 0.1 1.5 1 0 0 1 1 1 1 Histidine biosynthesis protein PA PF02225.17 gi|336255391|ref|YP_004598498.1| - 0.0031 17.1 0.1 0.87 9.3 0.0 2.4 2 0 0 2 2 2 2 PA domain PucR PF07905.6 gi|336255391|ref|YP_004598498.1| - 0.013 15.1 0.1 0.07 12.7 0.0 2.2 3 0 0 3 3 3 0 Purine catabolism regulatory protein-like family PEP_mutase PF13714.1 gi|336255391|ref|YP_004598498.1| - 0.02 14.1 0.2 0.066 12.4 0.1 1.9 1 1 0 1 1 1 0 Phosphoenolpyruvate phosphomutase ThiG PF05690.9 gi|336255391|ref|YP_004598498.1| - 0.034 13.2 0.3 0.056 12.5 0.2 1.3 1 0 0 1 1 1 0 Thiazole biosynthesis protein ThiG PALP PF00291.20 gi|336255392|ref|YP_004598499.1| - 1e-37 130.0 0.5 2.2e-37 128.9 0.3 1.5 1 1 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme IGPS PF00218.16 gi|336255393|ref|YP_004598500.1| - 4.3e-70 235.6 0.0 4.7e-70 235.5 0.0 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase QRPTase_C PF01729.14 gi|336255393|ref|YP_004598500.1| - 4.5e-07 29.5 0.5 2.6e-06 27.0 0.0 2.2 3 0 0 3 3 3 1 Quinolinate phosphoribosyl transferase, C-terminal domain NanE PF04131.9 gi|336255393|ref|YP_004598500.1| - 1.3e-05 24.2 0.1 7.1e-05 21.8 0.0 2.0 1 1 1 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase His_biosynth PF00977.16 gi|336255393|ref|YP_004598500.1| - 3.1e-05 23.3 0.0 0.00082 18.7 0.0 2.4 2 0 0 2 2 2 1 Histidine biosynthesis protein FMN_dh PF01070.13 gi|336255393|ref|YP_004598500.1| - 9.2e-05 21.4 0.4 0.00017 20.5 0.3 1.4 1 0 0 1 1 1 1 FMN-dependent dehydrogenase ThiG PF05690.9 gi|336255393|ref|YP_004598500.1| - 0.0055 15.8 0.9 0.028 13.5 0.1 2.1 1 1 0 2 2 2 1 Thiazole biosynthesis protein ThiG PcrB PF01884.12 gi|336255393|ref|YP_004598500.1| - 0.02 14.1 0.2 0.056 12.6 0.0 1.9 2 1 0 2 2 2 0 PcrB family Trp_syntA PF00290.15 gi|336255393|ref|YP_004598500.1| - 0.023 13.2 0.0 0.04 12.4 0.0 1.4 1 0 0 1 1 1 0 Tryptophan synthase alpha chain AP_endonuc_2 PF01261.19 gi|336255393|ref|YP_004598500.1| - 0.051 12.8 0.3 5.5 6.2 0.1 2.4 2 0 0 2 2 2 0 Xylose isomerase-like TIM barrel DNA_binding_1 PF01035.15 gi|336255394|ref|YP_004598501.1| - 5.9e-09 35.5 0.0 8.8e-09 34.9 0.0 1.3 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain Glu-tRNAGln PF02686.10 gi|336255394|ref|YP_004598501.1| - 0.053 13.3 0.1 0.12 12.2 0.1 1.6 1 0 0 1 1 1 0 Glu-tRNAGln amidotransferase C subunit COX1 PF00115.15 gi|336255395|ref|YP_004598502.1| - 3.8e-46 157.6 35.2 3.8e-46 157.6 24.4 1.7 3 0 0 3 3 3 1 Cytochrome C and Quinol oxidase polypeptide I Aconitase PF00330.15 gi|336255395|ref|YP_004598502.1| - 0.4 9.0 0.1 0.63 8.4 0.1 1.1 1 0 0 1 1 1 0 Aconitase family (aconitate hydratase) Amidohydro_2 PF04909.9 gi|336255397|ref|YP_004598504.1| - 2e-17 63.6 1.0 2.8e-17 63.2 0.7 1.1 1 0 0 1 1 1 1 Amidohydrolase Cpn60_TCP1 PF00118.19 gi|336255398|ref|YP_004598505.1| - 5.5e-140 467.2 4.8 6.2e-140 467.0 3.3 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family TroA PF01297.12 gi|336255398|ref|YP_004598505.1| - 0.0036 16.5 0.1 0.0084 15.3 0.1 1.6 1 0 0 1 1 1 1 Periplasmic solute binding protein family SAM_adeno_trans PF01887.11 gi|336255400|ref|YP_004598507.1| - 7.1e-76 254.6 0.0 8.6e-76 254.3 0.0 1.1 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase CTP_transf_2 PF01467.21 gi|336255401|ref|YP_004598508.1| - 7.1e-17 61.9 0.1 1.4e-16 60.9 0.0 1.5 1 1 1 2 2 2 1 Cytidylyltransferase Citrate_ly_lig PF08218.6 gi|336255401|ref|YP_004598508.1| - 0.00094 18.6 0.0 0.0045 16.4 0.0 1.9 1 1 1 2 2 2 1 Citrate lyase ligase C-terminal domain Lon_C PF05362.8 gi|336255402|ref|YP_004598509.1| - 1.3e-34 119.3 3.8 1.9e-34 118.7 2.6 1.3 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain AAA_32 PF13654.1 gi|336255402|ref|YP_004598509.1| - 2.7e-30 105.5 0.0 5.9e-23 81.3 0.0 2.3 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.16 gi|336255402|ref|YP_004598509.1| - 2.7e-17 62.6 0.1 4.6e-10 38.9 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.21 gi|336255402|ref|YP_004598509.1| - 4.7e-15 55.4 0.0 6.2e-09 35.5 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain ChlI PF13541.1 gi|336255402|ref|YP_004598509.1| - 7.1e-11 41.6 0.7 1.7e-10 40.4 0.5 1.7 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase AAA_5 PF07728.9 gi|336255402|ref|YP_004598509.1| - 3.9e-10 39.5 0.0 0.00094 18.9 0.0 2.6 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|336255402|ref|YP_004598509.1| - 2.1e-09 36.6 0.7 0.063 12.0 0.0 3.3 3 0 0 3 3 3 3 MCM2/3/5 family AAA PF00004.24 gi|336255402|ref|YP_004598509.1| - 1.3e-06 28.6 0.0 0.03 14.5 0.0 2.7 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.7 gi|336255402|ref|YP_004598509.1| - 2.3e-06 26.8 0.1 0.00087 18.3 0.0 2.4 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus Sigma54_activ_2 PF14532.1 gi|336255402|ref|YP_004598509.1| - 1.6e-05 25.0 0.0 0.13 12.3 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain TIP49 PF06068.8 gi|336255402|ref|YP_004598509.1| - 5.8e-05 21.9 0.1 0.011 14.4 0.0 2.3 2 0 0 2 2 2 1 TIP49 C-terminus AAA_3 PF07726.6 gi|336255402|ref|YP_004598509.1| - 9.6e-05 21.9 0.1 0.13 11.8 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|336255402|ref|YP_004598509.1| - 0.00019 21.5 0.0 0.0085 16.2 0.0 2.6 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.1 gi|336255402|ref|YP_004598509.1| - 0.0023 17.5 0.0 0.031 13.8 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|336255402|ref|YP_004598509.1| - 0.0028 17.3 0.0 0.0078 15.9 0.0 1.8 1 0 0 1 1 1 1 Part of AAA domain PhoH PF02562.11 gi|336255402|ref|YP_004598509.1| - 0.0036 16.5 0.0 0.0096 15.1 0.0 1.7 1 0 0 1 1 1 1 PhoH-like protein AAA_33 PF13671.1 gi|336255402|ref|YP_004598509.1| - 0.0053 16.6 0.1 0.034 14.0 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_PrkA PF08298.6 gi|336255402|ref|YP_004598509.1| - 0.0072 15.0 0.0 0.18 10.4 0.0 2.2 2 0 0 2 2 2 1 PrkA AAA domain AAA_18 PF13238.1 gi|336255402|ref|YP_004598509.1| - 0.0091 16.3 0.0 0.046 14.0 0.0 2.3 1 0 0 1 1 1 1 AAA domain DUF815 PF05673.8 gi|336255402|ref|YP_004598509.1| - 0.013 14.4 0.0 0.026 13.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) T2SE PF00437.15 gi|336255402|ref|YP_004598509.1| - 0.014 14.2 0.6 0.048 12.5 0.0 2.2 4 0 0 4 4 4 0 Type II/IV secretion system protein NACHT PF05729.7 gi|336255402|ref|YP_004598509.1| - 0.02 14.5 0.0 0.038 13.6 0.0 1.5 1 0 0 1 1 1 0 NACHT domain ABC_tran PF00005.22 gi|336255402|ref|YP_004598509.1| - 0.028 14.7 0.0 0.092 13.0 0.0 1.8 2 0 0 2 2 1 0 ABC transporter Zeta_toxin PF06414.7 gi|336255402|ref|YP_004598509.1| - 0.031 13.3 0.0 0.031 13.3 0.0 1.8 2 0 0 2 2 1 0 Zeta toxin IstB_IS21 PF01695.12 gi|336255402|ref|YP_004598509.1| - 0.036 13.4 0.0 0.073 12.4 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein TrwB_AAD_bind PF10412.4 gi|336255402|ref|YP_004598509.1| - 0.04 12.5 0.0 0.067 11.7 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_17 PF13207.1 gi|336255402|ref|YP_004598509.1| - 0.12 13.1 0.9 0.56 11.0 0.0 2.5 2 1 0 2 2 2 0 AAA domain Abi PF02517.11 gi|336255403|ref|YP_004598510.1| - 1.4e-11 44.3 16.5 2.8e-11 43.4 8.4 2.4 2 0 0 2 2 2 2 CAAX protease self-immunity ABC2_membrane_5 PF13346.1 gi|336255404|ref|YP_004598511.1| - 0.025 13.8 4.5 0.029 13.6 3.1 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein IspA PF04279.10 gi|336255404|ref|YP_004598511.1| - 0.027 14.4 2.0 0.029 14.3 1.1 1.3 1 1 0 1 1 1 0 Intracellular septation protein A Tom5 PF10642.4 gi|336255404|ref|YP_004598511.1| - 0.18 11.4 0.4 0.18 11.4 0.3 3.1 4 1 0 4 4 4 0 Mitochondrial import receptor subunit or translocase DUF2232 PF09991.4 gi|336255404|ref|YP_004598511.1| - 0.32 9.9 8.2 0.38 9.7 5.7 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2232) DUF4131 PF13567.1 gi|336255404|ref|YP_004598511.1| - 3.1 7.1 13.6 12 5.3 9.2 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) Bax1-I PF01027.15 gi|336255404|ref|YP_004598511.1| - 3.4 7.1 15.6 8.7 5.8 10.8 1.6 1 1 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 PTPS_related PF10131.4 gi|336255404|ref|YP_004598511.1| - 7.5 4.5 8.9 8.5 4.3 6.2 1.1 1 0 0 1 1 1 0 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein MerC PF03203.9 gi|336255404|ref|YP_004598511.1| - 7.5 6.9 9.3 20 5.5 6.5 1.7 1 1 0 1 1 1 0 MerC mercury resistance protein Glycos_transf_2 PF00535.21 gi|336255405|ref|YP_004598512.1| - 1.8e-16 60.2 0.1 2.8e-16 59.6 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|336255405|ref|YP_004598512.1| - 1.2e-10 41.6 1.0 4.9e-10 39.5 0.7 1.9 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|336255405|ref|YP_004598512.1| - 0.00067 18.8 0.0 0.00095 18.3 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|336255405|ref|YP_004598512.1| - 0.082 12.6 0.4 0.14 11.8 0.3 1.5 1 1 0 1 1 1 0 Glycosyl transferase family group 2 Methyltransf_11 PF08241.7 gi|336255406|ref|YP_004598513.1| - 2.8e-22 79.0 0.0 4.8e-22 78.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|336255406|ref|YP_004598513.1| - 1e-18 67.3 0.0 1.3e-18 67.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|336255406|ref|YP_004598513.1| - 1.3e-16 60.7 0.0 1.8e-16 60.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|336255406|ref|YP_004598513.1| - 3.5e-15 56.5 0.0 5.6e-15 55.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|336255406|ref|YP_004598513.1| - 3.9e-15 56.0 0.1 8.2e-15 55.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|336255406|ref|YP_004598513.1| - 1e-14 54.8 0.0 3.3e-14 53.1 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|336255406|ref|YP_004598513.1| - 1.5e-14 53.6 0.0 2e-14 53.2 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|336255406|ref|YP_004598513.1| - 7e-12 45.4 0.0 9.1e-12 45.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|336255406|ref|YP_004598513.1| - 3.1e-07 30.1 0.0 1.2e-06 28.1 0.0 1.9 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 MetW PF07021.7 gi|336255406|ref|YP_004598513.1| - 2.5e-06 27.0 0.0 3.8e-06 26.4 0.0 1.4 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW MTS PF05175.9 gi|336255406|ref|YP_004598513.1| - 3.2e-06 26.6 0.0 4.8e-06 26.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_9 PF08003.6 gi|336255406|ref|YP_004598513.1| - 0.0001 21.1 0.0 0.00014 20.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) TehB PF03848.9 gi|336255406|ref|YP_004598513.1| - 0.0005 19.2 0.0 0.00065 18.9 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB RrnaAD PF00398.15 gi|336255406|ref|YP_004598513.1| - 0.00052 19.1 0.0 0.00071 18.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_4 PF02390.12 gi|336255406|ref|YP_004598513.1| - 0.00069 18.7 0.0 0.00097 18.2 0.0 1.4 1 0 0 1 1 1 1 Putative methyltransferase CMAS PF02353.15 gi|336255406|ref|YP_004598513.1| - 0.0029 16.7 0.0 0.0064 15.6 0.0 1.5 1 1 1 2 2 2 1 Mycolic acid cyclopropane synthetase TPMT PF05724.6 gi|336255406|ref|YP_004598513.1| - 0.003 17.0 0.0 0.0048 16.3 0.0 1.3 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) Methyltransf_20 PF12147.3 gi|336255406|ref|YP_004598513.1| - 0.013 14.4 0.0 0.018 13.9 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase tRNA_U5-meth_tr PF05958.6 gi|336255406|ref|YP_004598513.1| - 0.023 13.4 0.1 0.043 12.4 0.0 1.5 1 1 1 2 2 2 0 tRNA (Uracil-5-)-methyltransferase Methyltransf_32 PF13679.1 gi|336255406|ref|YP_004598513.1| - 0.028 14.1 0.0 0.041 13.5 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain DUF938 PF06080.7 gi|336255406|ref|YP_004598513.1| - 0.036 13.6 0.0 0.074 12.5 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF938) FmrO PF07091.6 gi|336255406|ref|YP_004598513.1| - 0.041 12.8 0.0 0.06 12.3 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) NodS PF05401.6 gi|336255406|ref|YP_004598513.1| - 0.042 13.2 0.0 0.056 12.8 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) Methyltransf_15 PF09445.5 gi|336255406|ref|YP_004598513.1| - 0.052 13.1 0.0 0.069 12.7 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase PCMT PF01135.14 gi|336255406|ref|YP_004598513.1| - 0.079 12.4 0.0 0.12 11.9 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) HTH_24 PF13412.1 gi|336255407|ref|YP_004598514.1| - 0.00037 19.8 0.0 0.0006 19.1 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding GntR PF00392.16 gi|336255407|ref|YP_004598514.1| - 0.00082 18.7 0.3 0.0021 17.4 0.0 1.7 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family TFIIE_alpha PF02002.12 gi|336255407|ref|YP_004598514.1| - 0.0021 17.5 0.1 0.0039 16.6 0.0 1.4 1 1 0 1 1 1 1 TFIIE alpha subunit HTH_20 PF12840.2 gi|336255407|ref|YP_004598514.1| - 0.0021 17.7 0.1 0.0032 17.2 0.1 1.5 1 1 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|336255407|ref|YP_004598514.1| - 0.0043 16.7 0.1 0.006 16.2 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_12 PF08461.5 gi|336255407|ref|YP_004598514.1| - 0.022 14.4 0.8 0.25 11.1 0.1 2.5 1 1 1 2 2 2 0 Ribonuclease R winged-helix domain TrmB PF01978.14 gi|336255407|ref|YP_004598514.1| - 0.023 14.3 0.1 0.034 13.8 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_36 PF13730.1 gi|336255407|ref|YP_004598514.1| - 0.036 14.2 0.0 0.056 13.5 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Lactamase_B PF00753.22 gi|336255408|ref|YP_004598515.1| - 4.3e-21 75.4 3.0 7e-21 74.7 2.1 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|336255408|ref|YP_004598515.1| - 1.4e-05 24.7 0.0 1.9e-05 24.3 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|336255408|ref|YP_004598515.1| - 0.07 12.8 0.0 0.11 12.2 0.0 1.4 1 0 0 1 1 1 0 Beta-lactamase superfamily domain FAD_binding_4 PF01565.18 gi|336255408|ref|YP_004598515.1| - 0.098 12.1 0.1 0.18 11.2 0.1 1.4 1 0 0 1 1 1 0 FAD binding domain CxxCxxCC PF03692.10 gi|336255409|ref|YP_004598516.1| - 1.9e-13 50.6 0.0 6.8e-13 48.8 0.0 1.9 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain HIPIP PF01355.12 gi|336255409|ref|YP_004598516.1| - 0.026 14.6 1.2 0.14 12.2 0.1 2.2 2 0 0 2 2 2 0 High potential iron-sulfur protein Glucosamine_iso PF01182.15 gi|336255409|ref|YP_004598516.1| - 0.1 12.2 0.5 0.18 11.4 0.0 1.6 2 0 0 2 2 2 0 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase ALS_ss_C PF10369.4 gi|336255410|ref|YP_004598517.1| - 0.094 12.4 0.0 0.18 11.5 0.0 1.4 1 0 0 1 1 1 0 Small subunit of acetolactate synthase SPW PF03779.9 gi|336255410|ref|YP_004598517.1| - 0.21 10.9 17.2 0.04 13.3 4.7 2.6 2 2 0 2 2 2 0 SPW repeat TM2 PF05154.11 gi|336255410|ref|YP_004598517.1| - 0.31 11.2 0.2 0.31 11.2 0.1 2.7 3 0 0 3 3 3 0 TM2 domain Phage_holin_1 PF04531.8 gi|336255410|ref|YP_004598517.1| - 0.89 9.6 6.5 0.24 11.4 0.7 2.2 1 1 1 2 2 2 0 Bacteriophage holin PcrB PF01884.12 gi|336255411|ref|YP_004598518.1| - 4.1e-32 111.3 0.7 7.1e-32 110.5 0.5 1.4 1 1 0 1 1 1 1 PcrB family His_biosynth PF00977.16 gi|336255411|ref|YP_004598518.1| - 0.00011 21.6 0.0 0.00019 20.7 0.0 1.4 1 0 0 1 1 1 1 Histidine biosynthesis protein Trp_syntA PF00290.15 gi|336255411|ref|YP_004598518.1| - 0.035 12.6 0.0 1.4 7.3 0.0 2.3 2 0 0 2 2 2 0 Tryptophan synthase alpha chain Dus PF01207.12 gi|336255411|ref|YP_004598518.1| - 0.043 12.6 0.0 0.058 12.2 0.0 1.2 1 0 0 1 1 1 0 Dihydrouridine synthase (Dus) OKR_DC_1_N PF03709.10 gi|336255411|ref|YP_004598518.1| - 0.074 13.1 0.0 2.5 8.1 0.0 2.3 2 0 0 2 2 2 0 Orn/Lys/Arg decarboxylase, N-terminal domain TRAM PF01938.15 gi|336255412|ref|YP_004598519.1| - 1.8e-15 56.4 4.4 1.9e-15 56.3 2.4 1.5 2 0 0 2 2 2 1 TRAM domain Radical_SAM PF04055.16 gi|336255413|ref|YP_004598520.1| - 5.1e-14 52.7 0.1 5.5e-13 49.4 0.0 2.8 3 1 0 3 3 3 1 Radical SAM superfamily HHH PF00633.18 gi|336255413|ref|YP_004598520.1| - 3.2e-05 23.3 0.0 0.00011 21.7 0.0 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|336255413|ref|YP_004598520.1| - 0.00083 19.4 0.0 0.0031 17.6 0.0 2.0 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH_3 PF12836.2 gi|336255413|ref|YP_004598520.1| - 0.0014 18.5 0.0 0.0041 17.0 0.0 1.7 2 0 0 2 2 2 1 Helix-hairpin-helix motif PsbU PF06514.6 gi|336255413|ref|YP_004598520.1| - 0.0041 16.9 0.1 0.012 15.4 0.0 1.8 2 0 0 2 2 2 1 Photosystem II 12 kDa extrinsic protein (PsbU) HHH_2 PF12826.2 gi|336255413|ref|YP_004598520.1| - 0.047 13.5 0.0 0.13 12.1 0.0 1.8 1 0 0 1 1 1 0 Helix-hairpin-helix motif Churchill PF06573.6 gi|336255414|ref|YP_004598521.1| - 0.014 15.4 0.4 0.016 15.2 0.3 1.1 1 0 0 1 1 1 0 Churchill protein TF_Zn_Ribbon PF08271.7 gi|336255414|ref|YP_004598521.1| - 0.068 12.5 1.4 0.4 10.0 0.2 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding Prim_Zn_Ribbon PF08273.7 gi|336255414|ref|YP_004598521.1| - 0.086 12.9 0.9 0.15 12.1 0.6 1.4 1 0 0 1 1 1 0 Zinc-binding domain of primase-helicase HSP20 PF00011.16 gi|336255415|ref|YP_004598522.1| - 1e-05 25.3 0.0 1.5e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 Hsp20/alpha crystallin family Phage_Mu_Gp45 PF06890.7 gi|336255415|ref|YP_004598522.1| - 0.016 14.6 0.3 0.28 10.6 0.2 2.1 2 0 0 2 2 2 0 Bacteriophage Mu Gp45 protein YsaB PF13983.1 gi|336255415|ref|YP_004598522.1| - 0.088 12.9 0.0 0.48 10.6 0.0 2.2 3 0 0 3 3 3 0 YsaB-like lipoprotein DAO PF01266.19 gi|336255416|ref|YP_004598523.1| - 5.1e-69 232.8 9.5 5.9e-69 232.6 6.6 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|336255416|ref|YP_004598523.1| - 8.2e-08 32.1 2.6 8.2e-08 32.1 1.8 2.1 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.2 gi|336255416|ref|YP_004598523.1| - 2.2e-06 27.0 4.0 3.9e-06 26.1 2.8 1.5 1 1 0 1 1 1 1 FAD dependent oxidoreductase ApbA PF02558.11 gi|336255416|ref|YP_004598523.1| - 4.1e-06 26.3 1.0 7.6e-06 25.4 0.7 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Pyr_redox_2 PF07992.9 gi|336255416|ref|YP_004598523.1| - 8.1e-06 25.8 2.3 0.0002 21.3 1.6 2.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|336255416|ref|YP_004598523.1| - 3.1e-05 22.9 1.9 3.1e-05 22.9 1.3 1.8 2 0 0 2 2 2 1 FAD binding domain 3HCDH_N PF02737.13 gi|336255416|ref|YP_004598523.1| - 6.2e-05 22.7 0.3 0.00013 21.6 0.2 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox PF00070.22 gi|336255416|ref|YP_004598523.1| - 0.0004 20.7 0.7 0.0012 19.1 0.5 1.9 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|336255416|ref|YP_004598523.1| - 0.0016 17.5 1.0 0.0016 17.5 0.7 1.6 2 0 0 2 2 2 1 Thi4 family ThiF PF00899.16 gi|336255416|ref|YP_004598523.1| - 0.0024 17.7 1.6 0.0045 16.8 0.6 1.8 2 0 0 2 2 2 1 ThiF family GIDA PF01134.17 gi|336255416|ref|YP_004598523.1| - 0.003 16.4 2.1 0.0035 16.2 0.9 1.5 2 0 0 2 2 2 1 Glucose inhibited division protein A HI0933_like PF03486.9 gi|336255416|ref|YP_004598523.1| - 0.0031 16.0 1.4 0.006 15.1 0.7 1.6 2 0 0 2 2 2 1 HI0933-like protein NAD_binding_7 PF13241.1 gi|336255416|ref|YP_004598523.1| - 0.0085 16.3 0.0 0.016 15.4 0.0 1.5 1 0 0 1 1 1 1 Putative NAD(P)-binding NAD_Gly3P_dh_N PF01210.18 gi|336255416|ref|YP_004598523.1| - 0.0086 15.8 0.2 0.015 15.0 0.2 1.3 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_9 PF13454.1 gi|336255416|ref|YP_004598523.1| - 0.009 15.7 2.0 0.97 9.1 0.2 2.4 2 0 0 2 2 2 1 FAD-NAD(P)-binding Pyr_redox_3 PF13738.1 gi|336255416|ref|YP_004598523.1| - 0.011 15.7 0.7 0.011 15.7 0.5 1.7 2 0 0 2 2 1 0 Pyridine nucleotide-disulphide oxidoreductase 2-Hacid_dh_C PF02826.14 gi|336255416|ref|YP_004598523.1| - 0.019 14.1 0.2 0.034 13.3 0.1 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|336255416|ref|YP_004598523.1| - 0.045 13.5 0.3 0.12 12.2 0.1 1.7 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase UDPG_MGDP_dh_N PF03721.9 gi|336255416|ref|YP_004598523.1| - 0.067 12.5 0.1 0.11 11.8 0.1 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FAD_binding_3 PF01494.14 gi|336255416|ref|YP_004598523.1| - 0.077 12.0 4.5 0.037 13.0 0.9 2.0 2 0 0 2 2 2 0 FAD binding domain Hydant_A_N PF05378.8 gi|336255416|ref|YP_004598523.1| - 0.084 12.3 0.1 0.19 11.2 0.0 1.5 2 0 0 2 2 1 0 Hydantoinase/oxoprolinase N-terminal region Shikimate_DH PF01488.15 gi|336255416|ref|YP_004598523.1| - 0.1 12.6 0.1 0.29 11.2 0.0 1.7 2 0 0 2 2 1 0 Shikimate / quinate 5-dehydrogenase Amino_oxidase PF01593.19 gi|336255416|ref|YP_004598523.1| - 0.23 10.5 2.2 2.4 7.1 0.1 2.3 2 1 0 2 2 2 0 Flavin containing amine oxidoreductase Bac_luciferase PF00296.15 gi|336255417|ref|YP_004598524.1| - 0.00054 19.1 7.7 0.0006 19.0 4.8 1.4 1 1 0 1 1 1 1 Luciferase-like monooxygenase NUDIX PF00293.23 gi|336255418|ref|YP_004598525.1| - 2e-19 69.5 0.1 2.6e-19 69.1 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain CRISPR_Cse2 PF09485.5 gi|336255419|ref|YP_004598526.1| - 0.0035 17.4 0.7 0.0047 16.9 0.5 1.3 1 0 0 1 1 1 1 CRISPR-associated protein Cse2 (CRISPR_cse2) Glyco_transf_21 PF13506.1 gi|336255420|ref|YP_004598527.1| - 0.033 13.4 0.0 0.062 12.5 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 21 PhnA_Zn_Ribbon PF08274.7 gi|336255421|ref|YP_004598528.1| - 0.0017 18.0 1.3 0.024 14.4 0.1 2.2 2 0 0 2 2 2 1 PhnA Zinc-Ribbon zf-CHY PF05495.7 gi|336255421|ref|YP_004598528.1| - 0.0045 17.1 0.1 0.0052 16.9 0.0 1.1 1 0 0 1 1 1 1 CHY zinc finger A2L_zn_ribbon PF08792.5 gi|336255421|ref|YP_004598528.1| - 0.039 13.4 2.1 0.92 9.0 0.2 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-RING_3 PF14369.1 gi|336255421|ref|YP_004598528.1| - 0.039 13.9 2.1 0.064 13.2 1.4 1.4 1 1 0 1 1 1 0 zinc-finger DZR PF12773.2 gi|336255421|ref|YP_004598528.1| - 0.043 13.6 1.6 0.071 12.9 1.1 1.4 1 1 0 1 1 1 0 Double zinc ribbon zf-IS66 PF13005.2 gi|336255421|ref|YP_004598528.1| - 0.046 13.6 0.4 1.4 8.9 0.0 2.1 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 FYVE PF01363.16 gi|336255421|ref|YP_004598528.1| - 0.052 13.4 0.3 0.065 13.1 0.2 1.2 1 0 0 1 1 1 0 FYVE zinc finger Gin PF10764.4 gi|336255421|ref|YP_004598528.1| - 0.055 13.1 2.6 0.68 9.6 0.2 2.2 1 1 1 2 2 2 0 Inhibitor of sigma-G Gin Nudix_N_2 PF14803.1 gi|336255421|ref|YP_004598528.1| - 0.057 13.1 3.1 0.17 11.5 0.2 2.1 2 0 0 2 2 2 0 Nudix N-terminal zinc-ribbons_6 PF07191.7 gi|336255421|ref|YP_004598528.1| - 0.058 13.1 1.2 0.85 9.4 0.9 2.0 1 1 0 1 1 1 0 zinc-ribbons UPF0547 PF10571.4 gi|336255421|ref|YP_004598528.1| - 0.077 12.6 2.9 0.24 11.1 0.2 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 XPA_N PF01286.13 gi|336255421|ref|YP_004598528.1| - 0.1 12.2 3.1 3.5 7.3 0.2 2.3 2 0 0 2 2 2 0 XPA protein N-terminal Prok-RING_1 PF14446.1 gi|336255421|ref|YP_004598528.1| - 1 9.1 3.8 2.6 7.8 2.6 1.7 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 TF_Zn_Ribbon PF08271.7 gi|336255421|ref|YP_004598528.1| - 2.5 7.4 6.5 9.4 5.6 0.7 2.1 1 1 1 2 2 2 0 TFIIB zinc-binding PfkB PF00294.19 gi|336255422|ref|YP_004598529.1| - 6.1e-13 48.5 4.5 1.7e-10 40.5 1.4 2.1 2 0 0 2 2 2 2 pfkB family carbohydrate kinase DHH PF01368.15 gi|336255423|ref|YP_004598530.1| - 2e-14 53.4 0.0 2.8e-14 52.9 0.0 1.2 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|336255423|ref|YP_004598530.1| - 4.9e-09 35.7 0.4 1.1e-08 34.6 0.3 1.6 1 0 0 1 1 1 1 DHHA1 domain HAMP PF00672.20 gi|336255423|ref|YP_004598530.1| - 1.2 9.3 4.5 3.2 8.0 3.1 1.7 1 0 0 1 1 1 0 HAMP domain NAD_binding_10 PF13460.1 gi|336255424|ref|YP_004598531.1| - 7.3e-20 71.7 0.1 9.8e-20 71.3 0.0 1.2 1 0 0 1 1 1 1 NADH(P)-binding Epimerase PF01370.16 gi|336255424|ref|YP_004598531.1| - 3.7e-16 59.2 0.0 6.5e-16 58.4 0.0 1.5 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|336255424|ref|YP_004598531.1| - 3.9e-09 35.6 0.0 1.2e-07 30.7 0.0 2.1 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family TrkA_N PF02254.13 gi|336255424|ref|YP_004598531.1| - 2.2e-08 34.0 0.6 4.9e-08 32.9 0.3 1.7 2 0 0 2 2 2 1 TrkA-N domain ApbA PF02558.11 gi|336255424|ref|YP_004598531.1| - 7.1e-06 25.5 0.1 1.4e-05 24.5 0.0 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA F420_oxidored PF03807.12 gi|336255424|ref|YP_004598531.1| - 1.5e-05 25.3 0.1 3.2e-05 24.2 0.1 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent UDPG_MGDP_dh_N PF03721.9 gi|336255424|ref|YP_004598531.1| - 1.6e-05 24.3 0.1 2.7e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Pyr_redox PF00070.22 gi|336255424|ref|YP_004598531.1| - 0.00031 21.0 0.3 0.00066 20.0 0.2 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DUF1731 PF08338.6 gi|336255424|ref|YP_004598531.1| - 0.00089 18.6 0.0 0.0016 17.8 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1731) DAO PF01266.19 gi|336255424|ref|YP_004598531.1| - 0.00093 18.1 4.5 0.019 13.8 3.1 2.6 1 1 0 1 1 1 1 FAD dependent oxidoreductase GFO_IDH_MocA PF01408.17 gi|336255424|ref|YP_004598531.1| - 0.0014 19.1 0.1 0.0038 17.7 0.0 1.7 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_2 PF03446.10 gi|336255424|ref|YP_004598531.1| - 0.0029 17.4 0.0 0.0051 16.6 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase adh_short PF00106.20 gi|336255424|ref|YP_004598531.1| - 0.0048 16.8 1.1 0.017 15.0 0.6 2.0 1 1 0 1 1 1 1 short chain dehydrogenase Glyco_transf_28 PF03033.15 gi|336255424|ref|YP_004598531.1| - 0.0053 16.5 0.0 0.0095 15.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase family 28 N-terminal domain RmlD_sub_bind PF04321.12 gi|336255424|ref|YP_004598531.1| - 0.0054 15.6 0.2 0.017 14.0 0.1 2.0 1 1 0 1 1 1 1 RmlD substrate binding domain 3HCDH_N PF02737.13 gi|336255424|ref|YP_004598531.1| - 0.017 14.7 0.3 0.075 12.6 0.1 2.0 1 1 1 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|336255424|ref|YP_004598531.1| - 0.13 11.3 0.0 0.23 10.5 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HTH_18 PF12833.2 gi|336255426|ref|YP_004598533.1| - 0.18 11.9 0.8 0.7 10.0 0.1 1.9 1 1 1 2 2 2 0 Helix-turn-helix domain GFO_IDH_MocA PF01408.17 gi|336255427|ref|YP_004598534.1| - 3.4e-26 92.1 0.1 5.5e-26 91.4 0.1 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|336255427|ref|YP_004598534.1| - 6.7e-11 41.9 0.1 1.7e-10 40.6 0.1 1.7 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain 2-Hacid_dh_C PF02826.14 gi|336255427|ref|YP_004598534.1| - 5.1e-05 22.4 0.0 8.6e-05 21.7 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|336255427|ref|YP_004598534.1| - 7e-05 23.1 0.0 0.00014 22.2 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|336255427|ref|YP_004598534.1| - 0.00011 22.0 0.0 0.00043 20.1 0.0 1.9 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase CoA_binding PF02629.14 gi|336255427|ref|YP_004598534.1| - 0.0024 18.3 0.0 0.0068 16.8 0.0 1.8 2 0 0 2 2 2 1 CoA binding domain IlvN PF07991.7 gi|336255427|ref|YP_004598534.1| - 0.0038 16.6 0.0 0.0064 15.8 0.0 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain NAD_binding_3 PF03447.11 gi|336255427|ref|YP_004598534.1| - 0.0087 16.4 0.1 0.015 15.7 0.1 1.3 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain Semialdhyde_dh PF01118.19 gi|336255427|ref|YP_004598534.1| - 0.039 14.2 0.0 0.09 13.0 0.0 1.7 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain DnaA_N PF11638.3 gi|336255427|ref|YP_004598534.1| - 0.11 12.1 0.0 0.22 11.1 0.0 1.5 1 0 0 1 1 1 0 DnaA N-terminal domain TrkA_N PF02254.13 gi|336255427|ref|YP_004598534.1| - 0.11 12.5 0.1 0.29 11.1 0.1 1.8 1 1 0 1 1 1 0 TrkA-N domain ABC_tran PF00005.22 gi|336255429|ref|YP_004598536.1| - 1.1e-33 116.3 0.0 2e-33 115.5 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|336255429|ref|YP_004598536.1| - 2.3e-09 37.6 0.0 3e-05 24.1 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|336255429|ref|YP_004598536.1| - 2e-06 27.2 0.3 1.3e-05 24.5 0.2 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain TOBE PF03459.12 gi|336255429|ref|YP_004598536.1| - 2.6e-05 24.2 0.0 0.31 11.1 0.0 3.7 2 1 1 3 3 3 2 TOBE domain TOBE_2 PF08402.5 gi|336255429|ref|YP_004598536.1| - 0.00013 21.8 0.1 0.0098 15.8 0.1 2.8 1 1 0 1 1 1 1 TOBE domain AAA_29 PF13555.1 gi|336255429|ref|YP_004598536.1| - 0.00048 19.5 0.2 0.0051 16.3 0.0 2.3 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|336255429|ref|YP_004598536.1| - 0.0016 17.5 0.0 0.0077 15.3 0.0 1.8 2 0 0 2 2 2 1 AAA ATPase domain DUF258 PF03193.11 gi|336255429|ref|YP_004598536.1| - 0.0041 16.3 0.0 0.007 15.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|336255429|ref|YP_004598536.1| - 0.0049 17.0 1.0 0.046 13.8 0.7 2.2 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|336255429|ref|YP_004598536.1| - 0.02 14.9 0.1 0.048 13.6 0.0 1.8 1 1 0 1 1 1 0 AAA ATPase domain AAA_17 PF13207.1 gi|336255429|ref|YP_004598536.1| - 0.032 15.0 0.0 0.082 13.7 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|336255429|ref|YP_004598536.1| - 0.033 14.0 1.1 0.11 12.3 0.8 1.9 1 1 0 1 1 1 0 AAA domain Rad17 PF03215.10 gi|336255429|ref|YP_004598536.1| - 0.043 12.4 0.0 0.055 12.1 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA PF00004.24 gi|336255429|ref|YP_004598536.1| - 0.045 13.9 0.2 0.15 12.2 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.1 gi|336255429|ref|YP_004598536.1| - 0.049 13.0 0.0 0.44 9.9 0.0 2.3 2 0 0 2 2 2 0 AAA domain MobB PF03205.9 gi|336255429|ref|YP_004598536.1| - 0.063 12.9 0.2 0.21 11.2 0.1 1.9 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B RNA_helicase PF00910.17 gi|336255429|ref|YP_004598536.1| - 0.064 13.4 0.0 0.16 12.1 0.0 1.7 1 0 0 1 1 1 0 RNA helicase AAA_10 PF12846.2 gi|336255429|ref|YP_004598536.1| - 0.1 12.0 0.3 0.17 11.2 0.1 1.5 1 1 0 1 1 1 0 AAA-like domain NB-ARC PF00931.17 gi|336255429|ref|YP_004598536.1| - 0.1 11.4 0.0 0.17 10.7 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_23 PF13476.1 gi|336255429|ref|YP_004598536.1| - 0.13 12.5 0.1 0.18 12.1 0.0 1.4 1 1 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.17 gi|336255430|ref|YP_004598537.1| - 1.3e-11 44.3 19.2 1.3e-11 44.3 13.3 2.3 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|336255431|ref|YP_004598538.1| - 3.8e-15 55.8 14.7 3.8e-15 55.8 10.2 2.4 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_1 PF01547.20 gi|336255432|ref|YP_004598539.1| - 1e-24 87.8 0.8 1.7e-24 87.1 0.5 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|336255432|ref|YP_004598539.1| - 6.5e-21 75.2 2.0 8.9e-21 74.8 1.4 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.4 gi|336255432|ref|YP_004598539.1| - 0.00029 20.5 1.9 0.00029 20.5 1.3 2.1 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence FtsA PF14450.1 gi|336255432|ref|YP_004598539.1| - 0.13 12.0 0.0 0.3 10.9 0.0 1.5 1 0 0 1 1 1 0 Cell division protein FtsA Regulator_TrmB PF11495.3 gi|336255433|ref|YP_004598540.1| - 1e-67 227.5 0.0 1.3e-67 227.2 0.0 1.1 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.14 gi|336255433|ref|YP_004598540.1| - 1.7e-15 56.4 0.0 3.5e-15 55.4 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|336255433|ref|YP_004598540.1| - 2.4e-05 23.8 0.8 0.0024 17.5 0.0 3.0 3 0 0 3 3 3 1 MarR family T2SM PF04612.7 gi|336255433|ref|YP_004598540.1| - 0.0049 16.6 0.9 0.0085 15.9 0.6 1.3 1 0 0 1 1 1 1 Type II secretion system (T2SS), protein M PadR PF03551.9 gi|336255433|ref|YP_004598540.1| - 0.01 15.6 0.0 0.024 14.4 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_IclR PF09339.5 gi|336255433|ref|YP_004598540.1| - 0.02 14.4 0.2 0.079 12.5 0.0 2.0 2 0 0 2 2 2 0 IclR helix-turn-helix domain MarR PF01047.17 gi|336255433|ref|YP_004598540.1| - 0.028 14.1 0.0 0.083 12.6 0.0 1.9 1 0 0 1 1 1 0 MarR family HTH_27 PF13463.1 gi|336255433|ref|YP_004598540.1| - 0.054 13.8 0.0 0.4 11.0 0.0 2.5 1 1 1 2 2 2 0 Winged helix DNA-binding domain Latarcin PF10279.4 gi|336255433|ref|YP_004598540.1| - 0.13 12.4 0.2 0.31 11.2 0.2 1.6 1 0 0 1 1 1 0 Latarcin precursor TerY-C PF15616.1 gi|336255434|ref|YP_004598541.1| - 0.037 13.9 2.7 0.059 13.3 1.9 1.2 1 0 0 1 1 1 0 TerY-C metal binding domain Kinocilin PF15033.1 gi|336255434|ref|YP_004598541.1| - 0.043 13.3 0.5 0.09 12.3 0.4 1.5 1 0 0 1 1 1 0 Kinocilin protein zf-NADH-PPase PF09297.6 gi|336255434|ref|YP_004598541.1| - 0.047 13.2 2.6 6 6.4 0.1 2.6 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|336255434|ref|YP_004598541.1| - 0.37 10.6 2.6 9.7 6.0 0.3 2.5 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zf-RING_3 PF14369.1 gi|336255434|ref|YP_004598541.1| - 0.44 10.5 4.2 14 5.7 0.0 2.5 2 0 0 2 2 2 0 zinc-finger DZR PF12773.2 gi|336255434|ref|YP_004598541.1| - 0.88 9.4 5.8 0.19 11.5 1.5 1.8 2 0 0 2 2 2 0 Double zinc ribbon Zn-ribbon_8 PF09723.5 gi|336255434|ref|YP_004598541.1| - 1 9.3 4.0 6.3 6.8 0.0 2.5 2 0 0 2 2 2 0 Zinc ribbon domain GPDPase_memb PF10110.4 gi|336255435|ref|YP_004598542.1| - 2e-05 24.0 0.9 8.3e-05 22.0 0.2 2.3 1 1 1 2 2 2 1 Membrane domain of glycerophosphoryl diester phosphodiesterase UPF0259 PF06790.6 gi|336255435|ref|YP_004598542.1| - 0.00095 18.6 5.9 0.00095 18.6 4.1 1.8 1 1 1 2 2 2 1 Uncharacterised protein family (UPF0259) DUF975 PF06161.6 gi|336255435|ref|YP_004598542.1| - 0.0077 15.9 4.4 0.017 14.8 2.9 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF975) Sec62 PF03839.11 gi|336255435|ref|YP_004598542.1| - 2.9 7.2 4.5 2.3 7.5 1.9 1.7 2 0 0 2 2 2 0 Translocation protein Sec62 PRA1 PF03208.14 gi|336255435|ref|YP_004598542.1| - 6.4 6.1 12.9 0.16 11.3 3.9 2.0 2 0 0 2 2 2 0 PRA1 family protein PfkB PF00294.19 gi|336255436|ref|YP_004598543.1| - 1.1e-65 221.6 0.1 1.3e-65 221.4 0.1 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase SCFA_trans PF02667.9 gi|336255437|ref|YP_004598544.1| - 1.3e-37 129.6 14.2 1.7e-37 129.3 9.9 1.1 1 0 0 1 1 1 1 Short chain fatty acid transporter SCFA_trans PF02667.9 gi|336255438|ref|YP_004598545.1| - 4e-111 371.9 21.0 4.9e-111 371.6 14.6 1.1 1 0 0 1 1 1 1 Short chain fatty acid transporter DUF1648 PF07853.6 gi|336255438|ref|YP_004598545.1| - 0.015 14.7 0.3 0.015 14.7 0.2 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1648) Glyco_hydro_3 PF00933.16 gi|336255439|ref|YP_004598546.1| - 2.5e-68 230.2 0.0 3.3e-68 229.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain Glyco_hydro_3_C PF01915.17 gi|336255439|ref|YP_004598546.1| - 9.6e-41 139.7 0.0 1.7e-40 138.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 C-terminal domain Fn3-like PF14310.1 gi|336255439|ref|YP_004598546.1| - 2.8e-16 59.2 1.4 9.9e-16 57.4 0.1 2.2 2 0 0 2 2 2 1 Fibronectin type III-like domain TAT_signal PF10518.4 gi|336255439|ref|YP_004598546.1| - 0.00045 20.0 4.5 0.0015 18.3 3.1 1.9 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence DUF2383 PF09537.5 gi|336255440|ref|YP_004598547.1| - 0.075 13.2 0.2 0.15 12.3 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF2383) Nitroreductase PF00881.19 gi|336255441|ref|YP_004598548.1| - 9.2e-25 87.3 0.0 1.2e-24 86.9 0.0 1.2 1 0 0 1 1 1 1 Nitroreductase family Meth_synt_2 PF01717.13 gi|336255442|ref|YP_004598549.1| - 7e-81 271.7 0.0 8.3e-81 271.4 0.0 1.0 1 0 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.7 gi|336255442|ref|YP_004598549.1| - 1.8e-22 80.0 0.1 5e-21 75.2 0.0 2.0 2 0 0 2 2 2 1 Cobalamin-independent synthase, N-terminal domain URO-D PF01208.12 gi|336255442|ref|YP_004598549.1| - 0.0003 19.8 0.1 0.00051 19.0 0.0 1.4 2 0 0 2 2 2 1 Uroporphyrinogen decarboxylase (URO-D) SUV3_C PF12513.3 gi|336255442|ref|YP_004598549.1| - 0.18 11.2 1.3 1.3 8.4 0.1 2.4 2 0 0 2 2 2 0 Mitochondrial degradasome RNA helicase subunit C terminal Meth_synt_1 PF08267.7 gi|336255443|ref|YP_004598550.1| - 5.3e-27 94.8 0.0 1.8e-23 83.3 0.0 2.1 1 1 1 2 2 2 2 Cobalamin-independent synthase, N-terminal domain Meth_synt_2 PF01717.13 gi|336255443|ref|YP_004598550.1| - 4.8e-16 58.6 0.0 6.2e-16 58.2 0.0 1.0 1 0 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain GntP_permease PF02447.11 gi|336255444|ref|YP_004598551.1| - 6.3e-92 308.3 24.9 7.2e-92 308.1 17.2 1.0 1 0 0 1 1 1 1 GntP family permease Methyltransf_26 PF13659.1 gi|336255445|ref|YP_004598552.1| - 3.1e-15 56.2 0.1 5.1e-15 55.5 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|336255445|ref|YP_004598552.1| - 3.4e-08 33.0 0.0 5.1e-08 32.4 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_11 PF08241.7 gi|336255445|ref|YP_004598552.1| - 1.7e-07 31.6 0.0 2.8e-06 27.7 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|336255445|ref|YP_004598552.1| - 2.2e-05 24.9 0.0 3.8e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|336255445|ref|YP_004598552.1| - 7.7e-05 22.3 0.0 0.00012 21.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|336255445|ref|YP_004598552.1| - 0.00015 22.1 0.0 0.0017 18.7 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|336255445|ref|YP_004598552.1| - 0.00018 21.8 0.0 0.0003 21.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|336255445|ref|YP_004598552.1| - 0.0021 17.7 0.0 0.014 15.1 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain PrmA PF06325.8 gi|336255445|ref|YP_004598552.1| - 0.04 13.0 0.0 0.06 12.4 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) UPF0146 PF03686.8 gi|336255445|ref|YP_004598552.1| - 0.055 13.2 0.0 0.092 12.5 0.0 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0146) Methyltransf_32 PF13679.1 gi|336255445|ref|YP_004598552.1| - 0.13 11.9 0.0 0.19 11.4 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain MS_channel PF00924.13 gi|336255446|ref|YP_004598553.1| - 5.4e-47 159.7 0.1 8.3e-47 159.1 0.0 1.3 1 0 0 1 1 1 1 Mechanosensitive ion channel RrnaAD PF00398.15 gi|336255447|ref|YP_004598554.1| - 5.7e-48 163.2 0.0 7e-48 162.9 0.0 1.0 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_26 PF13659.1 gi|336255447|ref|YP_004598554.1| - 3.7e-07 30.1 0.6 5.7e-07 29.5 0.4 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|336255447|ref|YP_004598554.1| - 0.0044 17.5 0.2 0.013 16.0 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|336255447|ref|YP_004598554.1| - 0.015 15.7 0.2 0.048 14.1 0.0 1.9 2 0 0 2 2 2 0 Methyltransferase domain NodS PF05401.6 gi|336255447|ref|YP_004598554.1| - 0.036 13.4 0.0 0.071 12.4 0.0 1.5 1 0 0 1 1 1 0 Nodulation protein S (NodS) Spermine_synth PF01564.12 gi|336255447|ref|YP_004598554.1| - 0.078 11.8 0.0 0.13 11.1 0.0 1.3 1 0 0 1 1 1 0 Spermine/spermidine synthase Methyltransf_25 PF13649.1 gi|336255447|ref|YP_004598554.1| - 0.081 13.2 0.0 0.2 12.0 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain MTS PF05175.9 gi|336255447|ref|YP_004598554.1| - 0.094 12.0 0.0 0.15 11.3 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain Usp PF00582.21 gi|336255448|ref|YP_004598555.1| - 3.6e-23 82.3 1.0 4.7e-23 81.9 0.7 1.2 1 0 0 1 1 1 1 Universal stress protein family AP_endonuc_2 PF01261.19 gi|336255448|ref|YP_004598555.1| - 0.0013 18.0 0.5 0.23 10.7 0.1 2.1 1 1 1 2 2 2 2 Xylose isomerase-like TIM barrel CCDC-167 PF15188.1 gi|336255448|ref|YP_004598555.1| - 0.077 12.9 0.2 0.14 12.1 0.2 1.4 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 167 DUF655 PF04919.7 gi|336255449|ref|YP_004598556.1| - 1.1e-63 214.1 0.2 1.3e-63 213.9 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_3 PF12836.2 gi|336255449|ref|YP_004598556.1| - 8.5e-05 22.4 0.0 0.00016 21.5 0.0 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_6 PF14579.1 gi|336255449|ref|YP_004598556.1| - 0.002 18.1 0.0 0.0049 16.8 0.0 1.6 1 1 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|336255449|ref|YP_004598556.1| - 0.14 12.3 0.1 0.46 10.6 0.0 1.8 1 1 1 2 2 2 0 Helix-hairpin-helix domain RNA_pol_Rpb4 PF03874.11 gi|336255450|ref|YP_004598557.1| - 2.8e-14 53.1 1.2 3.2e-14 52.9 0.8 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb4 Zein PF01559.11 gi|336255450|ref|YP_004598557.1| - 0.023 13.9 0.0 0.024 13.8 0.0 1.1 1 0 0 1 1 1 0 Zein seed storage protein RNA_pol_Rpb1_6 PF04992.9 gi|336255450|ref|YP_004598557.1| - 0.03 14.0 0.3 0.034 13.9 0.2 1.4 1 1 0 1 1 1 0 RNA polymerase Rpb1, domain 6 Cytokin_check_N PF10407.4 gi|336255450|ref|YP_004598557.1| - 0.039 13.5 0.3 0.068 12.7 0.1 1.6 2 0 0 2 2 2 0 Cdc14 phosphatase binding protein N-terminus DUF1507 PF07408.6 gi|336255450|ref|YP_004598557.1| - 0.048 13.4 0.1 0.18 11.5 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1507) DUF3571 PF12095.3 gi|336255450|ref|YP_004598557.1| - 0.16 12.2 4.5 2 8.7 0.2 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3571) Ribosomal_L21e PF01157.13 gi|336255451|ref|YP_004598558.1| - 1.5e-34 117.7 0.2 1.7e-34 117.5 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e Myosin_N PF02736.14 gi|336255451|ref|YP_004598558.1| - 0.02 14.5 1.1 0.065 12.9 0.3 1.9 2 0 0 2 2 2 0 Myosin N-terminal SH3-like domain Cys_Met_Meta_PP PF01053.15 gi|336255453|ref|YP_004598560.1| - 1.3e-154 514.1 0.0 1.5e-154 514.0 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.14 gi|336255453|ref|YP_004598560.1| - 2.4e-05 23.2 0.0 4e-05 22.5 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Met_gamma_lyase PF06838.6 gi|336255453|ref|YP_004598560.1| - 4.2e-05 22.0 0.0 6.1e-05 21.4 0.0 1.2 1 0 0 1 1 1 1 Methionine gamma-lyase DegT_DnrJ_EryC1 PF01041.12 gi|336255453|ref|YP_004598560.1| - 0.0037 16.3 0.0 0.0063 15.5 0.0 1.4 1 1 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|336255453|ref|YP_004598560.1| - 0.022 13.9 0.0 0.097 11.8 0.0 2.1 1 1 0 1 1 1 0 Beta-eliminating lyase Lactamase_B PF00753.22 gi|336255454|ref|YP_004598561.1| - 3.3e-20 72.5 10.1 4.3e-20 72.1 7.0 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|336255454|ref|YP_004598561.1| - 0.0098 15.4 1.4 0.015 14.8 0.6 1.5 1 1 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_5 PF14597.1 gi|336255454|ref|YP_004598561.1| - 0.032 13.6 0.0 0.082 12.2 0.0 1.7 1 1 0 1 1 1 0 Metallo-beta-lactamase superfamily DNA_ligase_A_M PF01068.16 gi|336255455|ref|YP_004598562.1| - 3.7e-15 55.8 0.0 7.7e-15 54.7 0.0 1.5 1 0 0 1 1 1 1 ATP dependent DNA ligase domain UPF0278 PF08745.6 gi|336255457|ref|YP_004598564.1| - 2e-77 259.1 1.3 2.3e-77 258.9 0.9 1.0 1 0 0 1 1 1 1 UPF0278 family CorA PF01544.13 gi|336255457|ref|YP_004598564.1| - 0.049 12.6 0.4 0.077 12.0 0.3 1.3 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein MFS_1 PF07690.11 gi|336255458|ref|YP_004598565.1| - 1.3e-44 152.3 47.1 8e-41 139.9 30.9 2.1 2 0 0 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|336255458|ref|YP_004598565.1| - 7.9e-10 37.7 19.3 5.6e-09 34.9 0.3 3.0 1 1 1 3 3 3 2 MFS/sugar transport protein Sugar_tr PF00083.19 gi|336255458|ref|YP_004598565.1| - 2.1e-07 29.9 35.0 0.00025 19.7 7.9 3.2 2 1 0 3 3 3 2 Sugar (and other) transporter PTR2 PF00854.16 gi|336255458|ref|YP_004598565.1| - 0.62 8.7 16.2 5.5 5.6 4.6 3.3 3 0 0 3 3 3 0 POT family LacY_symp PF01306.14 gi|336255458|ref|YP_004598565.1| - 1.4 7.4 11.7 0.0068 15.0 1.5 2.0 2 1 1 3 3 3 0 LacY proton/sugar symporter EF1_GNE PF00736.14 gi|336255459|ref|YP_004598566.1| - 7.1e-22 76.9 0.0 7.5e-22 76.8 0.0 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain HMA PF00403.21 gi|336255459|ref|YP_004598566.1| - 0.11 12.6 0.1 0.61 10.2 0.0 2.0 2 0 0 2 2 2 0 Heavy-metal-associated domain DUF3073 PF11273.3 gi|336255459|ref|YP_004598566.1| - 0.13 12.7 0.0 0.17 12.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3073) DUF1610 PF07754.6 gi|336255460|ref|YP_004598567.1| - 1.3e-10 41.1 15.3 2.4e-05 24.3 2.1 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF1610) DZR PF12773.2 gi|336255460|ref|YP_004598567.1| - 0.0028 17.4 12.8 0.068 12.9 5.3 2.4 1 1 1 2 2 2 1 Double zinc ribbon zf-Mss51 PF13824.1 gi|336255460|ref|YP_004598567.1| - 0.006 16.4 11.5 0.44 10.4 1.5 2.8 1 1 1 2 2 2 2 Zinc-finger of mitochondrial splicing suppressor 51 C1_3 PF07649.7 gi|336255460|ref|YP_004598567.1| - 0.011 15.7 10.7 0.62 10.1 0.4 2.6 1 1 1 2 2 2 0 C1-like domain PolC_DP2 PF03833.8 gi|336255460|ref|YP_004598567.1| - 0.013 13.2 6.9 0.014 13.0 4.8 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 DUF2387 PF09526.5 gi|336255460|ref|YP_004598567.1| - 0.015 15.1 11.2 0.2 11.5 0.1 2.3 1 1 1 2 2 2 0 Probable metal-binding protein (DUF2387) OrfB_Zn_ribbon PF07282.6 gi|336255460|ref|YP_004598567.1| - 0.019 14.6 6.7 0.019 14.6 4.7 2.1 1 1 1 2 2 2 0 Putative transposase DNA-binding domain DNA_RNApol_7kD PF03604.8 gi|336255460|ref|YP_004598567.1| - 0.024 14.1 11.3 0.52 9.8 0.8 3.5 2 2 1 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit DUF2039 PF10217.4 gi|336255460|ref|YP_004598567.1| - 0.027 14.4 6.4 0.043 13.8 4.4 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2039) C1_1 PF00130.17 gi|336255460|ref|YP_004598567.1| - 0.033 13.9 9.6 0.038 13.7 0.4 2.3 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Zn_Tnp_IS91 PF14319.1 gi|336255460|ref|YP_004598567.1| - 0.044 13.2 8.2 0.053 13.0 5.7 1.2 1 0 0 1 1 1 0 Transposase zinc-binding domain zf-MYND PF01753.13 gi|336255460|ref|YP_004598567.1| - 0.078 12.8 8.0 0.52 10.2 3.1 2.2 1 1 1 2 2 2 0 MYND finger C1_2 PF03107.11 gi|336255460|ref|YP_004598567.1| - 0.092 12.8 7.7 7.3 6.8 1.5 3.1 1 1 1 2 2 2 0 C1 domain NMDAR2_C PF10565.4 gi|336255460|ref|YP_004598567.1| - 0.11 11.1 6.3 0.12 11.0 4.4 1.0 1 0 0 1 1 1 0 N-methyl D-aspartate receptor 2B3 C-terminus Prok-RING_1 PF14446.1 gi|336255460|ref|YP_004598567.1| - 0.11 12.2 10.4 0.21 11.3 0.7 2.4 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 Sgf11 PF08209.6 gi|336255460|ref|YP_004598567.1| - 0.12 11.6 15.2 0.17 11.2 0.6 3.8 2 1 2 4 4 4 0 Sgf11 (transcriptional regulation protein) zinc_ribbon_2 PF13240.1 gi|336255460|ref|YP_004598567.1| - 0.14 11.7 1.3 0.14 11.7 0.9 3.8 3 1 0 3 3 3 0 zinc-ribbon domain zf-UBP PF02148.14 gi|336255460|ref|YP_004598567.1| - 0.14 12.2 1.2 0.14 12.2 0.9 2.4 2 1 0 2 2 2 0 Zn-finger in ubiquitin-hydrolases and other protein zf-ribbon_3 PF13248.1 gi|336255460|ref|YP_004598567.1| - 0.2 10.9 15.6 0.13 11.5 2.5 3.4 1 1 1 3 3 3 0 zinc-ribbon domain zf-C2H2_6 PF13912.1 gi|336255460|ref|YP_004598567.1| - 0.23 11.3 10.3 7.5 6.6 0.1 3.3 3 0 0 3 3 3 0 C2H2-type zinc finger DNA_ligase_ZBD PF03119.11 gi|336255460|ref|YP_004598567.1| - 0.26 11.0 0.7 0.26 11.0 0.5 2.6 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-RING_5 PF14634.1 gi|336255460|ref|YP_004598567.1| - 0.26 11.0 10.8 1.3 8.8 0.9 2.2 2 0 0 2 2 2 0 zinc-RING finger domain BaffR-Tall_bind PF09256.5 gi|336255460|ref|YP_004598567.1| - 0.28 10.7 0.2 0.28 10.7 0.2 2.2 3 1 0 3 3 2 0 BAFF-R, TALL-1 binding Zn-ribbon_8 PF09723.5 gi|336255460|ref|YP_004598567.1| - 0.49 10.3 20.3 2.8 7.9 0.6 3.9 1 1 2 3 3 3 0 Zinc ribbon domain RNHCP PF12647.2 gi|336255460|ref|YP_004598567.1| - 0.5 10.2 9.8 1.2 8.9 3.9 2.2 1 1 1 2 2 2 0 RNHCP domain NMD3 PF04981.8 gi|336255460|ref|YP_004598567.1| - 0.59 9.2 9.1 0.7 8.9 6.3 1.0 1 0 0 1 1 1 0 NMD3 family Zn_Tnp_IS1595 PF12760.2 gi|336255460|ref|YP_004598567.1| - 0.85 9.4 20.2 1.2e+02 2.5 14.0 3.5 1 1 0 1 1 1 0 Transposase zinc-ribbon domain zf-UBR PF02207.15 gi|336255460|ref|YP_004598567.1| - 0.9 9.3 12.0 3.7 7.3 6.7 2.4 1 1 0 1 1 1 0 Putative zinc finger in N-recognin (UBR box) zf-C2H2 PF00096.21 gi|336255460|ref|YP_004598567.1| - 1 9.8 17.5 2.4 8.6 0.4 3.9 4 0 0 4 4 4 0 Zinc finger, C2H2 type UPF0547 PF10571.4 gi|336255460|ref|YP_004598567.1| - 1.1 9.0 14.9 1.2 8.8 7.5 3.1 2 1 0 2 2 2 0 Uncharacterised protein family UPF0547 IBR PF01485.16 gi|336255460|ref|YP_004598567.1| - 1.2 9.0 11.6 18 5.2 8.5 2.1 1 1 0 1 1 1 0 IBR domain zinc-ribbons_6 PF07191.7 gi|336255460|ref|YP_004598567.1| - 1.3 8.8 11.4 34 4.3 7.8 2.2 1 1 0 1 1 1 0 zinc-ribbons Tnp_zf-ribbon_2 PF13842.1 gi|336255460|ref|YP_004598567.1| - 1.3 9.4 13.0 1.4e+02 3.0 3.6 2.9 1 1 1 2 2 2 0 DDE_Tnp_1-like zinc-ribbon DUF2296 PF10058.4 gi|336255460|ref|YP_004598567.1| - 1.3 8.8 13.3 4.7 7.0 1.4 3.5 1 1 2 3 3 3 0 Predicted integral membrane metal-binding protein (DUF2296) HypA PF01155.14 gi|336255460|ref|YP_004598567.1| - 1.5 8.5 11.3 0.72 9.5 2.4 2.1 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family YhfH PF14149.1 gi|336255460|ref|YP_004598567.1| - 1.7 8.5 15.6 13 5.6 0.0 3.5 1 1 2 3 3 3 0 YhfH-like protein zf-C2HC5 PF06221.8 gi|336255460|ref|YP_004598567.1| - 1.8 8.3 11.8 1.2 8.9 4.7 2.1 1 1 1 2 2 2 0 Putative zinc finger motif, C2HC5-type C1_4 PF07975.7 gi|336255460|ref|YP_004598567.1| - 1.9 8.5 12.4 1.3e+02 2.7 8.8 2.7 1 1 0 1 1 1 0 TFIIH C1-like domain A2L_zn_ribbon PF08792.5 gi|336255460|ref|YP_004598567.1| - 1.9 8.0 15.9 3.6 7.1 3.2 3.7 1 1 2 3 3 3 0 A2L zinc ribbon domain zf-HIT PF04438.11 gi|336255460|ref|YP_004598567.1| - 2 8.1 17.7 30 4.3 4.2 3.5 1 1 1 2 2 2 0 HIT zinc finger zf-H2C2_2 PF13465.1 gi|336255460|ref|YP_004598567.1| - 2.2 8.7 18.3 1.2 9.5 0.5 3.5 2 1 2 4 4 3 0 Zinc-finger double domain Ribosomal_L37ae PF01780.14 gi|336255460|ref|YP_004598567.1| - 2.3 8.1 8.6 2.3 8.1 3.4 2.7 1 1 1 2 2 2 0 Ribosomal L37ae protein family DUF1272 PF06906.6 gi|336255460|ref|YP_004598567.1| - 2.7 7.9 11.2 11 5.9 7.7 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF1272) FYVE_2 PF02318.11 gi|336255460|ref|YP_004598567.1| - 3.3 7.6 6.5 3.6 7.5 4.5 1.1 1 0 0 1 1 1 0 FYVE-type zinc finger zf-C3HC4_4 PF15227.1 gi|336255460|ref|YP_004598567.1| - 5.1 7.0 11.5 0.35 10.7 0.8 2.4 2 1 0 2 2 2 0 zinc finger of C3HC4-type, RING zf-B_box PF00643.19 gi|336255460|ref|YP_004598567.1| - 5.3 7.0 12.5 3.1 7.7 5.4 2.5 1 1 0 2 2 2 0 B-box zinc finger zf-C3HC4_3 PF13920.1 gi|336255460|ref|YP_004598567.1| - 5.9 6.6 12.2 1.9e+02 1.8 8.5 2.4 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) TerY-C PF15616.1 gi|336255460|ref|YP_004598567.1| - 5.9 6.8 11.2 28 4.6 7.8 2.0 1 1 0 1 1 1 0 TerY-C metal binding domain Ribosomal_L32p PF01783.18 gi|336255460|ref|YP_004598567.1| - 6.3 7.0 6.8 5.1e+02 0.9 4.7 2.8 1 1 0 1 1 1 0 Ribosomal L32p protein family TFIIS_C PF01096.13 gi|336255460|ref|YP_004598567.1| - 6.6 6.4 18.3 9.9 5.8 0.8 4.0 2 1 2 4 4 4 0 Transcription factor S-II (TFIIS) zf-C3HC4 PF00097.20 gi|336255460|ref|YP_004598567.1| - 8.6 6.1 11.6 2.2 7.9 0.7 2.4 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) zf-AN1 PF01428.11 gi|336255460|ref|YP_004598567.1| - 9.1 6.2 13.7 13 5.8 2.5 2.8 2 1 1 3 3 3 0 AN1-like Zinc finger zf-C4_Topoisom PF01396.14 gi|336255460|ref|YP_004598567.1| - 9.5 5.8 14.3 1.2 8.6 1.5 3.4 3 1 1 4 4 4 0 Topoisomerase DNA binding C4 zinc finger DUF650 PF04894.7 gi|336255461|ref|YP_004598568.1| - 4.8e-95 318.1 0.0 5.8e-95 317.8 0.0 1.1 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF650) DUF651 PF04895.7 gi|336255461|ref|YP_004598568.1| - 7.9e-37 125.2 0.1 1.4e-36 124.4 0.0 1.4 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF651) CSD PF00313.17 gi|336255462|ref|YP_004598569.1| - 4.3e-20 71.2 0.2 4.7e-20 71.1 0.2 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain S1-like PF14444.1 gi|336255462|ref|YP_004598569.1| - 0.015 15.0 1.0 0.019 14.6 0.7 1.4 1 1 0 1 1 1 0 S1-like OB_RNB PF08206.6 gi|336255462|ref|YP_004598569.1| - 0.021 14.3 2.8 0.027 13.9 1.9 1.2 1 0 0 1 1 1 0 Ribonuclease B OB domain DUF2842 PF11003.3 gi|336255463|ref|YP_004598570.1| - 0.0044 16.8 1.2 0.006 16.4 0.8 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF2842) DUF4006 PF13179.1 gi|336255463|ref|YP_004598570.1| - 0.017 14.6 0.0 0.023 14.2 0.0 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF4006) SPC12 PF06645.8 gi|336255463|ref|YP_004598570.1| - 0.16 11.8 0.5 0.24 11.2 0.3 1.4 1 1 0 1 1 1 0 Microsomal signal peptidase 12 kDa subunit (SPC12) DUF973 PF06157.6 gi|336255463|ref|YP_004598570.1| - 0.36 9.7 3.6 0.41 9.5 2.5 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF973) Na_H_antiporter PF03553.9 gi|336255464|ref|YP_004598571.1| - 7.9e-59 199.1 39.0 1e-56 192.1 12.5 2.1 1 1 1 2 2 2 2 Na+/H+ antiporter family DUF302 PF03625.9 gi|336255465|ref|YP_004598572.1| - 3.5e-20 71.3 0.0 5.3e-20 70.7 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF302 Abi PF02517.11 gi|336255466|ref|YP_004598573.1| - 1.3e-06 28.4 0.3 2.7e-06 27.4 0.2 1.8 1 1 0 1 1 1 1 CAAX protease self-immunity DUF457 PF04307.9 gi|336255469|ref|YP_004598576.1| - 5.2e-18 64.8 4.0 7.7e-18 64.3 2.8 1.3 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) Zn_dep_PLPC PF00882.13 gi|336255469|ref|YP_004598576.1| - 0.02 14.5 0.1 0.033 13.8 0.1 1.3 1 0 0 1 1 1 0 Zinc dependent phospholipase C PQQ_2 PF13360.1 gi|336255470|ref|YP_004598577.1| - 2.8e-41 141.5 25.7 8.3e-19 67.9 1.9 3.8 1 1 3 4 4 4 4 PQQ-like domain PQQ PF01011.16 gi|336255470|ref|YP_004598577.1| - 2.9e-18 64.3 9.0 0.0088 15.5 0.1 7.4 7 0 0 7 7 7 6 PQQ enzyme repeat PQQ_3 PF13570.1 gi|336255470|ref|YP_004598577.1| - 1.6e-14 53.6 24.9 4.1e-05 23.6 0.0 7.9 7 2 1 8 8 8 5 PQQ-like domain CinA PF02464.12 gi|336255471|ref|YP_004598578.1| - 1.4e-55 187.0 1.2 1.5e-55 186.8 0.9 1.0 1 0 0 1 1 1 1 Competence-damaged protein Sensor PF13796.1 gi|336255472|ref|YP_004598579.1| - 4.3e-34 117.6 25.1 5.3e-34 117.3 17.4 1.1 1 0 0 1 1 1 1 Putative sensor DUF898 PF05987.8 gi|336255472|ref|YP_004598579.1| - 0.02 13.8 1.5 0.02 13.8 1.0 2.2 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF898) Aminotran_1_2 PF00155.16 gi|336255473|ref|YP_004598580.1| - 2.4e-58 197.8 0.0 2.8e-58 197.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|336255473|ref|YP_004598580.1| - 6.3e-09 35.3 0.0 1e-08 34.7 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.14 gi|336255473|ref|YP_004598580.1| - 2.7e-08 32.9 0.0 5.5e-08 31.9 0.0 1.4 1 1 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|336255473|ref|YP_004598580.1| - 4.6e-07 29.2 0.0 7.5e-07 28.5 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Alliinase_C PF04864.8 gi|336255473|ref|YP_004598580.1| - 4.6e-05 22.2 0.0 6.7e-05 21.7 0.0 1.2 1 0 0 1 1 1 1 Allinase Cys_Met_Meta_PP PF01053.15 gi|336255473|ref|YP_004598580.1| - 0.0001 20.7 0.0 0.00013 20.4 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_MocR PF12897.2 gi|336255473|ref|YP_004598580.1| - 0.0046 15.5 0.3 0.15 10.6 0.2 2.4 1 1 0 1 1 1 1 Alanine-glyoxylate amino-transferase HRDC PF00570.18 gi|336255473|ref|YP_004598580.1| - 0.075 12.7 0.1 4 7.2 0.0 3.0 3 0 0 3 3 3 0 HRDC domain ArsA_ATPase PF02374.10 gi|336255474|ref|YP_004598581.1| - 9.1e-78 261.3 0.0 7.5e-50 169.6 0.0 2.5 2 1 0 2 2 2 2 Anion-transporting ATPase CbiA PF01656.18 gi|336255474|ref|YP_004598581.1| - 3e-08 33.2 0.0 2.1e-07 30.5 0.0 2.2 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|336255474|ref|YP_004598581.1| - 0.00015 21.7 0.1 0.0054 16.6 0.0 2.4 2 1 0 2 2 2 1 AAA domain AAA_25 PF13481.1 gi|336255474|ref|YP_004598581.1| - 0.0011 18.3 1.0 0.016 14.6 0.1 2.5 2 0 0 2 2 2 1 AAA domain Zeta_toxin PF06414.7 gi|336255474|ref|YP_004598581.1| - 0.086 11.9 0.3 0.22 10.5 0.0 1.7 2 0 0 2 2 2 0 Zeta toxin SRP54 PF00448.17 gi|336255474|ref|YP_004598581.1| - 0.095 12.1 0.1 0.41 10.0 0.1 1.9 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain PhoH PF02562.11 gi|336255474|ref|YP_004598581.1| - 0.11 11.7 0.0 0.19 10.9 0.0 1.3 1 0 0 1 1 1 0 PhoH-like protein YhjQ PF06564.7 gi|336255474|ref|YP_004598581.1| - 0.13 11.5 0.0 0.24 10.7 0.0 1.3 1 0 0 1 1 1 0 YhjQ protein IstB_IS21 PF01695.12 gi|336255474|ref|YP_004598581.1| - 0.14 11.5 0.0 0.23 10.8 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein Fer4_NifH PF00142.13 gi|336255474|ref|YP_004598581.1| - 0.16 11.1 0.0 0.27 10.3 0.0 1.4 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Usp PF00582.21 gi|336255475|ref|YP_004598582.1| - 9.2e-21 74.4 3.9 1e-20 74.3 2.7 1.0 1 0 0 1 1 1 1 Universal stress protein family Glyco_tranf_2_3 PF13641.1 gi|336255475|ref|YP_004598582.1| - 0.18 11.5 0.9 0.46 10.2 0.1 1.8 2 0 0 2 2 2 0 Glycosyltransferase like family 2 MFS_1 PF07690.11 gi|336255476|ref|YP_004598583.1| - 1.3e-37 129.4 54.7 1.2e-33 116.3 30.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily ATG22 PF11700.3 gi|336255476|ref|YP_004598583.1| - 7.8e-05 21.3 7.7 7.8e-05 21.3 5.4 2.4 2 1 0 2 2 2 1 Vacuole effluxer Atg22 like MFS_1_like PF12832.2 gi|336255476|ref|YP_004598583.1| - 0.013 15.2 0.4 1.1 9.1 0.0 3.4 3 0 0 3 3 3 0 MFS_1 like family Neurensin PF14927.1 gi|336255476|ref|YP_004598583.1| - 1.7 8.0 6.7 0.36 10.2 0.1 2.8 3 0 0 3 3 3 0 Neurensin Tautomerase PF01361.16 gi|336255477|ref|YP_004598584.1| - 2.5e-09 36.5 0.0 0.00021 20.7 0.0 2.1 2 0 0 2 2 2 2 Tautomerase enzyme Tautomerase_2 PF14552.1 gi|336255477|ref|YP_004598584.1| - 0.0019 18.1 0.0 0.25 11.3 0.0 2.0 1 1 1 2 2 2 2 Tautomerase enzyme Tautomerase_3 PF14832.1 gi|336255477|ref|YP_004598584.1| - 0.019 15.0 0.0 0.052 13.5 0.0 1.7 1 1 1 2 2 2 0 Putative oxalocrotonate tautomerase enzyme MatE PF01554.13 gi|336255478|ref|YP_004598585.1| - 1.4e-59 200.3 32.6 2.6e-32 111.6 8.6 2.6 2 0 0 2 2 2 2 MatE Polysacc_synt_C PF14667.1 gi|336255478|ref|YP_004598585.1| - 1e-06 28.6 22.4 2.2e-05 24.2 6.7 5.0 4 2 0 4 4 4 2 Polysaccharide biosynthesis C-terminal domain MVIN PF03023.9 gi|336255478|ref|YP_004598585.1| - 4.3e-05 22.1 23.2 0.004 15.6 16.1 3.1 1 1 0 1 1 1 1 MviN-like protein DUF4191 PF13829.1 gi|336255478|ref|YP_004598585.1| - 0.76 8.8 4.2 1.1 8.2 0.7 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4191) Na_sulph_symp PF00939.14 gi|336255479|ref|YP_004598586.1| - 3.8e-88 296.4 34.7 5e-88 296.0 24.1 1.0 1 0 0 1 1 1 1 Sodium:sulfate symporter transmembrane region CitMHS PF03600.11 gi|336255479|ref|YP_004598586.1| - 3.7e-16 58.6 42.6 4.6e-08 32.0 5.5 3.3 2 2 1 3 3 3 3 Citrate transporter HTH_IclR PF09339.5 gi|336255480|ref|YP_004598587.1| - 1.7e-06 27.5 1.2 1.8e-06 27.4 0.3 1.4 2 0 0 2 2 2 1 IclR helix-turn-helix domain MarR PF01047.17 gi|336255480|ref|YP_004598587.1| - 3.3e-06 26.7 0.1 4.7e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.15 gi|336255480|ref|YP_004598587.1| - 7.3e-06 26.0 0.1 9.6e-06 25.6 0.0 1.1 1 0 0 1 1 1 1 Transcriptional regulator MarR_2 PF12802.2 gi|336255480|ref|YP_004598587.1| - 7.9e-06 25.4 0.2 1e-05 25.1 0.1 1.2 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|336255480|ref|YP_004598587.1| - 0.00071 18.9 0.0 0.0011 18.3 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|336255480|ref|YP_004598587.1| - 0.00097 19.4 0.1 0.0013 19.0 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_11 PF08279.7 gi|336255480|ref|YP_004598587.1| - 0.0013 18.3 0.0 0.0018 17.9 0.0 1.2 1 0 0 1 1 1 1 HTH domain Fe_dep_repress PF01325.14 gi|336255480|ref|YP_004598587.1| - 0.0035 17.2 0.0 0.0079 16.1 0.0 1.6 1 1 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_34 PF13601.1 gi|336255480|ref|YP_004598587.1| - 0.0035 17.3 0.0 0.0096 15.9 0.0 1.7 1 1 0 1 1 1 1 Winged helix DNA-binding domain HTH_DeoR PF08220.7 gi|336255480|ref|YP_004598587.1| - 0.0045 16.5 0.2 0.009 15.5 0.1 1.6 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_20 PF12840.2 gi|336255480|ref|YP_004598587.1| - 0.0053 16.5 0.3 0.0087 15.8 0.2 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|336255480|ref|YP_004598587.1| - 0.026 14.3 0.1 0.03 14.1 0.1 1.2 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain FeoC PF09012.5 gi|336255480|ref|YP_004598587.1| - 0.028 14.0 0.0 0.033 13.8 0.0 1.1 1 0 0 1 1 1 0 FeoC like transcriptional regulator HTH_AsnC-type PF13404.1 gi|336255480|ref|YP_004598587.1| - 0.033 13.7 0.5 0.063 12.8 0.4 1.5 1 1 0 1 1 1 0 AsnC-type helix-turn-helix domain GntR PF00392.16 gi|336255480|ref|YP_004598587.1| - 0.042 13.2 0.0 0.063 12.7 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Mrr_N PF14338.1 gi|336255480|ref|YP_004598587.1| - 0.11 12.5 0.3 1.9 8.6 0.2 2.0 1 1 0 1 1 1 0 Mrr N-terminal domain LexA_DNA_bind PF01726.11 gi|336255480|ref|YP_004598587.1| - 0.12 11.9 0.1 0.18 11.3 0.0 1.3 1 0 0 1 1 1 0 LexA DNA binding domain adh_short PF00106.20 gi|336255481|ref|YP_004598588.1| - 4.5e-35 121.0 0.7 6.4e-35 120.5 0.5 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|336255481|ref|YP_004598588.1| - 5.4e-21 75.4 0.0 6.8e-21 75.1 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|336255481|ref|YP_004598588.1| - 1.9e-14 53.7 0.1 2.9e-14 53.1 0.1 1.2 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.1 gi|336255481|ref|YP_004598588.1| - 9e-13 48.6 0.5 1.4e-12 47.9 0.3 1.4 1 1 0 1 1 1 1 NADH(P)-binding Epimerase PF01370.16 gi|336255481|ref|YP_004598588.1| - 3.1e-08 33.3 0.0 1.2e-07 31.4 0.0 2.0 2 1 0 2 2 2 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|336255481|ref|YP_004598588.1| - 2.5e-06 26.6 0.1 6.4e-06 25.2 0.1 1.6 1 1 0 1 1 1 1 RmlD substrate binding domain NmrA PF05368.8 gi|336255481|ref|YP_004598588.1| - 0.00042 19.6 0.0 0.00091 18.5 0.0 1.5 1 0 0 1 1 1 1 NmrA-like family Eno-Rase_NADH_b PF12242.3 gi|336255481|ref|YP_004598588.1| - 0.0011 18.7 0.0 0.0025 17.5 0.0 1.6 1 0 0 1 1 1 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase 3Beta_HSD PF01073.14 gi|336255481|ref|YP_004598588.1| - 0.0018 17.0 0.0 0.0025 16.5 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family TrkA_N PF02254.13 gi|336255481|ref|YP_004598588.1| - 0.0028 17.6 0.2 0.0073 16.2 0.1 1.7 2 0 0 2 2 2 1 TrkA-N domain DUF1776 PF08643.5 gi|336255481|ref|YP_004598588.1| - 0.0032 16.6 0.0 0.0045 16.1 0.0 1.2 1 0 0 1 1 1 1 Fungal family of unknown function (DUF1776) 2-Hacid_dh_C PF02826.14 gi|336255481|ref|YP_004598588.1| - 0.066 12.3 0.0 0.25 10.4 0.0 1.8 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain MatE PF01554.13 gi|336255482|ref|YP_004598589.1| - 5.5e-45 152.8 22.6 9.4e-23 80.6 4.5 2.5 2 0 0 2 2 2 2 MatE Polysacc_synt_C PF14667.1 gi|336255482|ref|YP_004598589.1| - 6.7e-07 29.2 4.3 6.7e-07 29.2 3.0 3.8 3 1 1 4 4 4 2 Polysaccharide biosynthesis C-terminal domain ABC2_membrane_5 PF13346.1 gi|336255482|ref|YP_004598589.1| - 5.7 6.1 7.9 27 3.9 3.7 2.3 2 0 0 2 2 2 0 ABC-2 family transporter protein Endonuclease_5 PF04493.9 gi|336255483|ref|YP_004598590.1| - 2.3e-46 157.7 0.0 3.3e-46 157.2 0.0 1.1 1 0 0 1 1 1 1 Endonuclease V DUF99 PF01949.11 gi|336255483|ref|YP_004598590.1| - 0.074 12.1 0.0 0.22 10.6 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function DUF99 Rhomboid PF01694.17 gi|336255484|ref|YP_004598591.1| - 3.1e-23 82.4 16.8 5.3e-23 81.6 11.6 1.4 1 0 0 1 1 1 1 Rhomboid family zf-AN1 PF01428.11 gi|336255484|ref|YP_004598591.1| - 1.7e-14 53.3 6.5 2.3e-14 52.9 4.5 1.2 1 0 0 1 1 1 1 AN1-like Zinc finger DUF1751 PF08551.5 gi|336255484|ref|YP_004598591.1| - 2.9e-05 24.3 0.1 5.9e-05 23.3 0.1 1.4 1 0 0 1 1 1 1 Eukaryotic integral membrane protein (DUF1751) FYVE PF01363.16 gi|336255484|ref|YP_004598591.1| - 0.045 13.6 1.0 0.063 13.1 0.7 1.2 1 0 0 1 1 1 0 FYVE zinc finger zf-HIT PF04438.11 gi|336255484|ref|YP_004598591.1| - 0.12 12.0 4.4 0.17 11.5 3.0 1.2 1 0 0 1 1 1 0 HIT zinc finger C1_3 PF07649.7 gi|336255484|ref|YP_004598591.1| - 0.93 9.5 5.1 1.6 8.8 3.5 1.4 1 0 0 1 1 1 0 C1-like domain DUF2346 PF09803.4 gi|336255485|ref|YP_004598592.1| - 1.1 9.1 3.4 0.58 10.0 0.7 1.7 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2346) DNA_pol_B_thumb PF14791.1 gi|336255486|ref|YP_004598593.1| - 4.2e-26 90.4 0.0 1.1e-25 89.0 0.0 1.8 1 0 0 1 1 1 1 DNA polymerase beta thumb HHH_8 PF14716.1 gi|336255486|ref|YP_004598593.1| - 1.9e-21 75.9 4.6 1e-16 60.8 0.1 3.8 2 1 1 3 3 3 3 Helix-hairpin-helix domain HHH_5 PF14520.1 gi|336255486|ref|YP_004598593.1| - 5.4e-18 64.9 3.8 1.7e-12 47.3 0.4 3.1 2 0 0 2 2 2 2 Helix-hairpin-helix domain PHP PF02811.14 gi|336255486|ref|YP_004598593.1| - 1.9e-14 53.8 0.0 4.8e-14 52.5 0.0 1.8 1 0 0 1 1 1 1 PHP domain HHH PF00633.18 gi|336255486|ref|YP_004598593.1| - 8.5e-09 34.6 1.7 0.0014 18.2 0.1 3.3 3 0 0 3 3 3 2 Helix-hairpin-helix motif HHH_2 PF12826.2 gi|336255486|ref|YP_004598593.1| - 2.4e-08 33.7 3.6 0.0016 18.2 0.0 3.4 3 0 0 3 3 3 2 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.4 gi|336255486|ref|YP_004598593.1| - 1.5e-07 30.8 0.1 2.5e-06 26.9 0.0 3.0 3 1 0 3 3 3 1 Fingers domain of DNA polymerase lambda DNA_pol_B_palm PF14792.1 gi|336255486|ref|YP_004598593.1| - 0.00011 22.1 0.0 0.00032 20.7 0.0 1.7 1 0 0 1 1 1 1 DNA polymerase beta palm HHH_3 PF12836.2 gi|336255486|ref|YP_004598593.1| - 0.00018 21.3 0.0 0.26 11.2 0.0 3.5 2 1 0 2 2 2 1 Helix-hairpin-helix motif Ribosomal_S13 PF00416.17 gi|336255486|ref|YP_004598593.1| - 0.003 17.9 1.1 11 6.5 0.0 4.2 3 1 2 5 5 5 1 Ribosomal protein S13/S18 IMS_HHH PF11798.3 gi|336255486|ref|YP_004598593.1| - 0.0035 17.3 0.1 7.8 6.7 0.0 3.4 3 0 0 3 3 3 2 IMS family HHH motif Cdd1 PF11731.3 gi|336255486|ref|YP_004598593.1| - 0.016 15.1 0.0 0.32 10.9 0.0 2.5 1 1 0 1 1 1 0 Pathogenicity locus Mut7-C PF01927.11 gi|336255487|ref|YP_004598594.1| - 2.2e-37 128.2 0.0 2.5e-37 128.1 0.0 1.0 1 0 0 1 1 1 1 Mut7-C RNAse domain DZR PF12773.2 gi|336255487|ref|YP_004598594.1| - 0.0059 16.3 0.2 0.012 15.3 0.1 1.5 1 0 0 1 1 1 1 Double zinc ribbon DUF4379 PF14311.1 gi|336255487|ref|YP_004598594.1| - 0.018 14.8 0.3 0.032 14.0 0.2 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4379) zf-TFIIB PF13453.1 gi|336255487|ref|YP_004598594.1| - 0.058 12.6 1.0 0.14 11.4 0.7 1.5 1 0 0 1 1 1 0 Transcription factor zinc-finger RNA_POL_M_15KD PF02150.11 gi|336255487|ref|YP_004598594.1| - 0.074 12.7 0.3 9.2 6.0 0.0 2.4 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit PcfJ PF14284.1 gi|336255488|ref|YP_004598595.1| - 0.065 12.7 0.0 0.067 12.6 0.0 1.1 1 0 0 1 1 1 0 PcfJ-like protein PHP_C PF13263.1 gi|336255489|ref|YP_004598596.1| - 6.2e-16 57.6 0.1 1.2e-15 56.7 0.1 1.5 1 0 0 1 1 1 1 PHP-associated zf-C2H2 PF00096.21 gi|336255490|ref|YP_004598597.1| - 0.0054 16.9 0.0 5.2 7.6 0.0 2.3 2 0 0 2 2 2 2 Zinc finger, C2H2 type Herpes_UL47 PF03362.8 gi|336255490|ref|YP_004598597.1| - 0.011 14.1 0.3 0.013 13.8 0.2 1.0 1 0 0 1 1 1 0 Herpesvirus UL47 protein DUF349 PF03993.7 gi|336255490|ref|YP_004598597.1| - 0.059 13.5 0.2 0.097 12.8 0.1 1.3 1 0 0 1 1 1 0 Domain of Unknown Function (DUF349) DUF4594 PF15266.1 gi|336255490|ref|YP_004598597.1| - 0.064 13.4 0.0 0.089 12.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4594) zf-C2H2_4 PF13894.1 gi|336255490|ref|YP_004598597.1| - 0.08 13.3 0.0 3.4 8.1 0.0 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger Spt5-NGN PF03439.8 gi|336255491|ref|YP_004598598.1| - 4.4e-24 84.0 0.1 7e-24 83.3 0.0 1.3 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.24 gi|336255491|ref|YP_004598598.1| - 1.8e-07 30.5 0.6 4.6e-07 29.3 0.1 1.9 2 0 0 2 2 2 1 KOW motif NusG PF02357.14 gi|336255491|ref|YP_004598598.1| - 0.03 14.5 0.0 0.38 11.0 0.0 2.2 1 1 0 1 1 1 0 Transcription termination factor nusG SecE PF00584.15 gi|336255492|ref|YP_004598599.1| - 0.13 11.8 0.3 0.16 11.6 0.2 1.1 1 0 0 1 1 1 0 SecE/Sec61-gamma subunits of protein translocation complex Herpes_UL25 PF01499.11 gi|336255493|ref|YP_004598600.1| - 3.7 5.7 7.8 3.7 5.7 5.4 1.0 1 0 0 1 1 1 0 Herpesvirus UL25 family Bac_luciferase PF00296.15 gi|336255494|ref|YP_004598601.1| - 6.5e-60 202.8 2.5 8.4e-60 202.4 1.7 1.1 1 0 0 1 1 1 1 Luciferase-like monooxygenase Trypsin_2 PF13365.1 gi|336255495|ref|YP_004598602.1| - 2.9e-22 78.9 0.5 5.8e-22 77.9 0.3 1.5 1 0 0 1 1 1 1 Trypsin-like peptidase domain PDZ_2 PF13180.1 gi|336255495|ref|YP_004598602.1| - 6.4e-20 70.8 0.0 1.4e-19 69.7 0.0 1.6 1 0 0 1 1 1 1 PDZ domain Trypsin PF00089.21 gi|336255495|ref|YP_004598602.1| - 5e-15 55.6 0.2 8.6e-15 54.9 0.1 1.3 1 0 0 1 1 1 1 Trypsin PDZ PF00595.19 gi|336255495|ref|YP_004598602.1| - 8.7e-05 22.6 0.1 0.00029 20.9 0.1 1.9 1 1 0 1 1 1 1 PDZ domain (Also known as DHR or GLGF) Peptidase_S46 PF10459.4 gi|336255495|ref|YP_004598602.1| - 0.00045 18.7 0.6 0.00045 18.7 0.4 1.6 2 0 0 2 2 2 1 Peptidase S46 Tricorn_PDZ PF14685.1 gi|336255495|ref|YP_004598602.1| - 0.00069 19.3 0.2 0.0051 16.5 0.0 2.3 2 0 0 2 2 2 1 Tricorn protease PDZ domain Peptidase_S7 PF00949.16 gi|336255495|ref|YP_004598602.1| - 0.093 12.1 0.5 0.18 11.2 0.4 1.4 1 0 0 1 1 1 0 Peptidase S7, Flavivirus NS3 serine protease Peptidase_S3 PF00944.14 gi|336255495|ref|YP_004598602.1| - 0.099 12.0 0.1 0.19 11.1 0.0 1.4 1 0 0 1 1 1 0 Alphavirus core protein TAT_signal PF10518.4 gi|336255495|ref|YP_004598602.1| - 8.2 6.7 13.7 0.15 12.1 4.3 2.2 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence MR_MLE_C PF13378.1 gi|336255496|ref|YP_004598603.1| - 6.3e-29 100.2 0.0 1.5e-28 98.9 0.0 1.7 2 0 0 2 2 2 1 Enolase C-terminal domain-like MR_MLE_N PF02746.11 gi|336255496|ref|YP_004598603.1| - 2.5e-14 53.2 0.0 5e-14 52.2 0.0 1.5 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MR_MLE PF01188.16 gi|336255496|ref|YP_004598603.1| - 4.2e-14 52.8 0.6 2.2e-12 47.2 0.0 3.3 3 0 0 3 3 3 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain ADH_N PF08240.7 gi|336255497|ref|YP_004598604.1| - 8.1e-11 41.6 0.0 1.4e-10 40.9 0.0 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|336255497|ref|YP_004598604.1| - 5.9e-05 22.6 0.0 9.8e-05 21.9 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Aldolase PF01081.14 gi|336255498|ref|YP_004598605.1| - 1.4e-45 154.8 1.2 1.6e-45 154.6 0.8 1.0 1 0 0 1 1 1 1 KDPG and KHG aldolase DHO_dh PF01180.16 gi|336255498|ref|YP_004598605.1| - 0.0077 15.2 5.9 0.08 11.8 0.6 2.9 1 1 1 3 3 3 2 Dihydroorotate dehydrogenase IMPDH PF00478.20 gi|336255498|ref|YP_004598605.1| - 0.29 9.9 6.9 0.19 10.5 0.7 2.6 3 0 0 3 3 3 0 IMP dehydrogenase / GMP reductase domain Regulator_TrmB PF11495.3 gi|336255499|ref|YP_004598606.1| - 1.4e-55 187.8 0.0 1.9e-55 187.4 0.0 1.2 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.14 gi|336255499|ref|YP_004598606.1| - 1e-16 60.3 0.2 4.1e-16 58.4 0.0 2.0 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|336255499|ref|YP_004598606.1| - 0.0031 17.1 0.1 0.025 14.2 0.0 2.3 2 0 0 2 2 2 1 MarR family HTH_11 PF08279.7 gi|336255499|ref|YP_004598606.1| - 0.0059 16.2 0.5 2.7 7.7 0.1 2.6 2 1 0 2 2 2 2 HTH domain Rrf2 PF02082.15 gi|336255499|ref|YP_004598606.1| - 0.0077 16.3 0.0 0.064 13.3 0.0 2.2 2 0 0 2 2 2 1 Transcriptional regulator MarR PF01047.17 gi|336255499|ref|YP_004598606.1| - 0.015 14.9 0.0 0.031 14.0 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_IclR PF09339.5 gi|336255499|ref|YP_004598606.1| - 0.017 14.6 0.0 1.4 8.5 0.0 2.6 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_36 PF13730.1 gi|336255499|ref|YP_004598606.1| - 0.18 11.9 0.1 1.3 9.2 0.0 2.4 2 1 0 2 2 2 0 Helix-turn-helix domain Glyco_hydro_15 PF00723.16 gi|336255500|ref|YP_004598607.1| - 0.0012 17.4 0.2 0.2 10.1 0.2 3.1 2 1 1 4 4 4 2 Glycosyl hydrolases family 15 Prenyltrans_1 PF13243.1 gi|336255500|ref|YP_004598607.1| - 0.78 9.7 7.2 4.3 7.4 0.6 3.0 2 1 1 3 3 3 0 Prenyltransferase-like Alpha-amylase PF00128.19 gi|336255501|ref|YP_004598608.1| - 1.4e-86 290.8 0.0 1.8e-86 290.4 0.0 1.1 1 0 0 1 1 1 1 Alpha amylase, catalytic domain Alpha-amylase_N PF02903.9 gi|336255501|ref|YP_004598608.1| - 1.2e-33 115.5 0.0 2.1e-33 114.8 0.0 1.4 1 0 0 1 1 1 1 Alpha amylase, N-terminal ig-like domain DUF3459 PF11941.3 gi|336255501|ref|YP_004598608.1| - 1e-05 25.5 0.5 3e-05 24.0 0.4 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF3459) Glyco_hydro_31 PF01055.21 gi|336255501|ref|YP_004598608.1| - 0.0012 17.7 0.2 0.0017 17.3 0.1 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 31 hDGE_amylase PF14701.1 gi|336255501|ref|YP_004598608.1| - 0.17 10.7 0.0 0.26 10.1 0.0 1.1 1 0 0 1 1 1 0 glucanotransferase domain of human glycogen debranching enzyme ABC_tran PF00005.22 gi|336255502|ref|YP_004598609.1| - 9.4e-32 110.1 0.0 1.5e-31 109.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.5 gi|336255502|ref|YP_004598609.1| - 7.7e-12 45.0 0.2 3.2e-11 43.0 0.1 2.2 2 0 0 2 2 1 1 TOBE domain TOBE PF03459.12 gi|336255502|ref|YP_004598609.1| - 2.6e-07 30.6 0.0 8e-07 29.0 0.0 1.9 1 0 0 1 1 1 1 TOBE domain AAA_21 PF13304.1 gi|336255502|ref|YP_004598609.1| - 2.9e-06 27.4 0.0 0.021 14.7 0.0 2.3 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|336255502|ref|YP_004598609.1| - 0.00039 19.7 0.2 0.002 17.3 0.1 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|336255502|ref|YP_004598609.1| - 0.0013 18.8 0.3 0.0033 17.5 0.2 1.8 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|336255502|ref|YP_004598609.1| - 0.0031 17.5 0.0 0.01 15.8 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_18 PF13238.1 gi|336255502|ref|YP_004598609.1| - 0.0052 17.0 0.0 0.02 15.1 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|336255502|ref|YP_004598609.1| - 0.0053 16.6 0.0 0.016 15.1 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|336255502|ref|YP_004598609.1| - 0.0093 16.7 0.7 0.027 15.2 0.2 2.3 2 1 0 2 2 1 1 AAA domain AAA PF00004.24 gi|336255502|ref|YP_004598609.1| - 0.013 15.6 0.0 0.033 14.4 0.0 1.7 2 0 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.17 gi|336255502|ref|YP_004598609.1| - 0.016 14.0 0.0 0.03 13.2 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain Zeta_toxin PF06414.7 gi|336255502|ref|YP_004598609.1| - 0.026 13.5 0.1 0.067 12.2 0.0 1.7 2 0 0 2 2 2 0 Zeta toxin Arch_ATPase PF01637.13 gi|336255502|ref|YP_004598609.1| - 0.028 14.1 0.0 0.063 12.9 0.0 1.7 2 0 0 2 2 1 0 Archaeal ATPase ATP-synt_ab PF00006.20 gi|336255502|ref|YP_004598609.1| - 0.029 13.8 0.0 0.031 13.7 0.0 1.1 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_23 PF13476.1 gi|336255502|ref|YP_004598609.1| - 0.03 14.6 0.0 0.083 13.1 0.0 1.7 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.17 gi|336255502|ref|YP_004598609.1| - 0.037 14.1 0.0 0.38 10.9 0.0 2.6 3 0 0 3 3 3 0 RNA helicase Rad17 PF03215.10 gi|336255502|ref|YP_004598609.1| - 0.042 12.5 0.0 0.063 11.9 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_33 PF13671.1 gi|336255502|ref|YP_004598609.1| - 0.044 13.6 0.5 0.072 12.9 0.4 1.6 1 1 0 1 1 1 0 AAA domain Miro PF08477.8 gi|336255502|ref|YP_004598609.1| - 0.044 14.2 0.0 0.11 13.0 0.0 1.7 1 0 0 1 1 1 0 Miro-like protein MobB PF03205.9 gi|336255502|ref|YP_004598609.1| - 0.044 13.4 0.1 0.11 12.1 0.0 1.7 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B DUF258 PF03193.11 gi|336255502|ref|YP_004598609.1| - 0.047 12.8 0.0 0.072 12.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 NACHT PF05729.7 gi|336255502|ref|YP_004598609.1| - 0.062 12.9 0.0 0.12 12.0 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_28 PF13521.1 gi|336255502|ref|YP_004598609.1| - 0.088 12.7 0.3 0.21 11.5 0.2 1.7 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|336255502|ref|YP_004598609.1| - 0.094 12.0 0.2 0.3 10.4 0.2 1.9 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|336255502|ref|YP_004598609.1| - 0.13 11.8 0.0 0.28 10.7 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_19 PF13245.1 gi|336255502|ref|YP_004598609.1| - 0.13 12.0 0.0 0.28 10.9 0.0 1.5 1 0 0 1 1 1 0 Part of AAA domain SRP54 PF00448.17 gi|336255502|ref|YP_004598609.1| - 0.16 11.3 0.4 0.42 10.0 0.3 1.8 1 1 0 1 1 1 0 SRP54-type protein, GTPase domain SBP_bac_8 PF13416.1 gi|336255504|ref|YP_004598611.1| - 6.4e-41 140.9 1.8 8.5e-41 140.5 1.2 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|336255504|ref|YP_004598611.1| - 7e-26 91.6 4.2 9.2e-26 91.3 2.9 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|336255504|ref|YP_004598611.1| - 0.01 15.2 0.1 0.045 13.0 0.0 2.0 2 0 0 2 2 2 0 Bacterial extracellular solute-binding protein TAT_signal PF10518.4 gi|336255504|ref|YP_004598611.1| - 0.015 15.2 0.2 0.028 14.4 0.1 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence GTPase_Cys_C PF12631.2 gi|336255504|ref|YP_004598611.1| - 0.12 12.7 0.5 26 5.2 0.0 2.4 2 0 0 2 2 2 0 Catalytic cysteine-containing C-terminus of GTPase, MnmE BPD_transp_1 PF00528.17 gi|336255505|ref|YP_004598612.1| - 1.2e-14 54.2 19.1 1.2e-14 54.2 13.2 2.5 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DSHCT PF08148.7 gi|336255505|ref|YP_004598612.1| - 0.16 11.2 0.0 0.25 10.5 0.0 1.2 1 0 0 1 1 1 0 DSHCT (NUC185) domain DUF975 PF06161.6 gi|336255505|ref|YP_004598612.1| - 3 7.5 14.6 2 8.1 7.2 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF975) BPD_transp_1 PF00528.17 gi|336255506|ref|YP_004598613.1| - 1.2e-14 54.2 11.8 1.2e-14 54.2 8.2 2.5 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component MR_MLE_C PF13378.1 gi|336255507|ref|YP_004598614.1| - 1.2e-29 102.4 0.1 3.5e-29 101.0 0.0 1.8 2 0 0 2 2 2 1 Enolase C-terminal domain-like MR_MLE PF01188.16 gi|336255507|ref|YP_004598614.1| - 8.4e-14 51.8 0.7 1.9e-12 47.5 0.0 3.2 3 0 0 3 3 3 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MR_MLE_N PF02746.11 gi|336255507|ref|YP_004598614.1| - 3.2e-13 49.7 0.0 6.5e-13 48.7 0.0 1.5 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain SBP_bac_11 PF13531.1 gi|336255507|ref|YP_004598614.1| - 0.1 12.1 0.0 0.23 11.0 0.0 1.6 1 1 0 1 1 1 0 Bacterial extracellular solute-binding protein tRNA_SAD PF07973.9 gi|336255508|ref|YP_004598615.1| - 3.5e-10 39.5 0.2 6.9e-10 38.6 0.1 1.5 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2c PF01411.14 gi|336255508|ref|YP_004598615.1| - 1.5e-07 30.1 0.0 2e-07 29.7 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) HTH_3 PF01381.17 gi|336255509|ref|YP_004598616.1| - 0.00022 21.0 0.1 0.00033 20.4 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|336255509|ref|YP_004598616.1| - 0.0005 20.2 0.7 0.0009 19.3 0.5 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|336255509|ref|YP_004598616.1| - 0.0047 16.5 0.2 0.0082 15.7 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|336255509|ref|YP_004598616.1| - 0.011 15.7 0.0 0.016 15.2 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain PhnA_Zn_Ribbon PF08274.7 gi|336255509|ref|YP_004598616.1| - 0.075 12.8 2.0 0.22 11.3 1.4 1.7 1 1 0 1 1 1 0 PhnA Zinc-Ribbon Host_attach PF10116.4 gi|336255509|ref|YP_004598616.1| - 0.17 12.0 0.7 0.35 11.0 0.5 1.4 1 0 0 1 1 1 0 Protein required for attachment to host cells DUF420 PF04238.7 gi|336255510|ref|YP_004598617.1| - 2e-36 124.9 6.0 2e-36 124.9 4.2 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF420) DUF2306 PF10067.4 gi|336255510|ref|YP_004598617.1| - 3.1e-05 24.0 2.2 3.1e-05 24.0 1.5 2.6 1 1 0 2 2 2 1 Predicted membrane protein (DUF2306) DUF3413 PF11893.3 gi|336255510|ref|YP_004598617.1| - 0.34 9.7 5.0 0.54 9.0 0.8 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF3413) DUF1240 PF06836.7 gi|336255510|ref|YP_004598617.1| - 0.46 10.7 6.2 0.086 13.0 0.9 2.1 3 0 0 3 3 3 0 Protein of unknown function (DUF1240) Cytochrom_B561 PF03188.11 gi|336255510|ref|YP_004598617.1| - 0.85 9.4 6.6 0.33 10.7 1.9 2.1 2 0 0 2 2 2 0 Eukaryotic cytochrome b561 Amastin PF07344.6 gi|336255510|ref|YP_004598617.1| - 2.6 7.6 7.2 0.23 11.0 0.3 2.1 2 0 0 2 2 2 0 Amastin surface glycoprotein Tad PF13400.1 gi|336255511|ref|YP_004598618.1| - 0.046 13.7 1.9 0.057 13.4 1.3 1.1 1 0 0 1 1 1 0 Putative Flp pilus-assembly TadE/G-like OppC_N PF12911.2 gi|336255511|ref|YP_004598618.1| - 0.11 11.9 4.5 0.12 11.7 3.1 1.2 1 0 0 1 1 1 0 N-terminal TM domain of oligopeptide transport permease C Arch_flagellin PF01917.11 gi|336255511|ref|YP_004598618.1| - 0.15 11.6 3.8 0.17 11.5 2.7 1.0 1 0 0 1 1 1 0 Archaebacterial flagellin GATase_6 PF13522.1 gi|336255512|ref|YP_004598619.1| - 1.9e-22 79.6 0.0 3.9e-22 78.6 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.1 gi|336255512|ref|YP_004598619.1| - 1.4e-20 73.2 0.0 3.1e-20 72.1 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|336255512|ref|YP_004598619.1| - 1e-18 67.1 0.0 1.3e-12 47.1 0.0 3.1 1 1 1 2 2 2 2 Glutamine amidotransferases class-II Pribosyltran PF00156.22 gi|336255512|ref|YP_004598619.1| - 2.2e-11 43.5 0.2 7.4e-11 41.8 0.1 1.9 1 1 0 1 1 1 1 Phosphoribosyl transferase domain GATase_4 PF13230.1 gi|336255512|ref|YP_004598619.1| - 0.0048 15.6 0.0 0.0081 14.8 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II Na_sulph_symp PF00939.14 gi|336255513|ref|YP_004598620.1| - 8e-34 117.3 17.5 1.1e-33 116.8 12.1 1.0 1 0 0 1 1 1 1 Sodium:sulfate symporter transmembrane region CitMHS PF03600.11 gi|336255513|ref|YP_004598620.1| - 2.2e-13 49.5 2.6 1.6e-10 40.1 0.0 2.6 1 1 1 2 2 2 2 Citrate transporter MutS_V PF00488.16 gi|336255514|ref|YP_004598621.1| - 1.1e-09 38.0 0.0 1.8e-09 37.3 0.0 1.2 1 0 0 1 1 1 1 MutS domain V AAA_21 PF13304.1 gi|336255514|ref|YP_004598621.1| - 0.017 15.1 0.1 0.044 13.7 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.1 gi|336255514|ref|YP_004598621.1| - 0.018 14.9 1.3 0.049 13.5 0.0 2.4 2 1 0 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|336255514|ref|YP_004598621.1| - 0.019 14.4 2.1 0.17 11.2 0.0 3.0 3 1 0 3 3 3 0 AAA-like domain AAA_14 PF13173.1 gi|336255514|ref|YP_004598621.1| - 0.056 13.3 0.0 0.1 12.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|336255514|ref|YP_004598621.1| - 0.14 11.6 0.0 0.29 10.6 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain HAD_2 PF13419.1 gi|336255516|ref|YP_004598623.1| - 5.5e-11 42.9 0.1 6.7e-11 42.7 0.1 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|336255516|ref|YP_004598623.1| - 1.8e-08 33.9 0.2 4.7e-08 32.6 0.0 1.7 2 0 0 2 2 2 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|336255516|ref|YP_004598623.1| - 0.0004 20.8 0.9 0.047 14.0 0.6 2.2 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase DUF3375 PF11855.3 gi|336255516|ref|YP_004598623.1| - 0.005 15.6 0.5 0.0067 15.2 0.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3375) HAD PF12710.2 gi|336255516|ref|YP_004598623.1| - 0.0072 16.5 0.1 0.01 16.0 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Polyketide_cyc2 PF10604.4 gi|336255517|ref|YP_004598624.1| - 8.5e-14 51.8 0.7 9.5e-14 51.7 0.5 1.0 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport AHSA1 PF08327.6 gi|336255517|ref|YP_004598624.1| - 8.9e-06 25.8 0.0 1.1e-05 25.5 0.0 1.2 1 0 0 1 1 1 1 Activator of Hsp90 ATPase homolog 1-like protein Polyketide_cyc PF03364.15 gi|336255517|ref|YP_004598624.1| - 9.3e-06 25.6 0.2 1.1e-05 25.4 0.1 1.4 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Acetyltransf_6 PF13480.1 gi|336255519|ref|YP_004598626.1| - 3.3e-11 43.3 2.7 3.3e-11 43.3 1.8 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain FemAB PF02388.11 gi|336255519|ref|YP_004598626.1| - 3.1e-08 32.7 0.6 1.6e-06 27.0 0.0 2.1 2 0 0 2 2 2 2 FemAB family DUF482 PF04339.7 gi|336255519|ref|YP_004598626.1| - 1.1e-06 27.8 0.0 0.0033 16.3 0.0 2.1 2 0 0 2 2 2 2 Protein of unknown function, DUF482 ADH_zinc_N PF00107.21 gi|336255520|ref|YP_004598627.1| - 1.9e-26 92.1 0.4 3.3e-26 91.3 0.3 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|336255520|ref|YP_004598627.1| - 1.4e-22 79.4 0.9 2.1e-22 78.9 0.1 1.7 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N_2 PF13602.1 gi|336255520|ref|YP_004598627.1| - 4e-18 66.5 0.9 7.3e-18 65.6 0.1 1.8 2 0 0 2 2 2 1 Zinc-binding dehydrogenase NADH_4Fe-4S PF10589.4 gi|336255520|ref|YP_004598627.1| - 0.024 13.7 3.7 0.074 12.2 2.6 1.8 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Epimerase PF01370.16 gi|336255521|ref|YP_004598628.1| - 1.4e-14 54.1 0.0 2e-14 53.5 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|336255521|ref|YP_004598628.1| - 4.4e-10 39.8 0.5 8.7e-10 38.8 0.3 1.5 1 1 0 1 1 1 1 NADH(P)-binding NAD_binding_4 PF07993.7 gi|336255521|ref|YP_004598628.1| - 5.5e-10 38.5 0.0 1.9e-09 36.8 0.0 1.7 1 1 0 2 2 2 1 Male sterility protein RmlD_sub_bind PF04321.12 gi|336255521|ref|YP_004598628.1| - 1e-09 37.7 0.3 2.2e-09 36.6 0.2 1.5 1 1 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.10 gi|336255521|ref|YP_004598628.1| - 7.7e-08 31.5 0.3 6.4e-05 21.9 0.2 3.0 1 1 0 2 2 2 1 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.14 gi|336255521|ref|YP_004598628.1| - 1.5e-07 30.3 0.0 2.7e-07 29.5 0.0 1.3 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family adh_short PF00106.20 gi|336255521|ref|YP_004598628.1| - 1.7e-05 24.7 3.7 0.00036 20.4 1.6 3.1 2 2 0 2 2 2 1 short chain dehydrogenase DapB_N PF01113.15 gi|336255521|ref|YP_004598628.1| - 0.00065 19.6 0.0 0.0013 18.6 0.0 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus KR PF08659.5 gi|336255521|ref|YP_004598628.1| - 0.045 13.4 0.0 8.1 6.0 0.0 2.4 1 1 1 2 2 2 0 KR domain Semialdhyde_dh PF01118.19 gi|336255521|ref|YP_004598628.1| - 0.094 13.0 0.2 0.64 10.3 0.1 2.3 2 1 0 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain HemY_N PF07219.8 gi|336255522|ref|YP_004598629.1| - 0.0066 15.9 0.0 0.0076 15.7 0.0 1.2 1 0 0 1 1 1 1 HemY protein N-terminus Mit_KHE1 PF10173.4 gi|336255522|ref|YP_004598629.1| - 0.95 9.2 2.8 1.3 8.8 1.9 1.2 1 0 0 1 1 1 0 Mitochondrial K+-H+ exchange-related GST_N_2 PF13409.1 gi|336255523|ref|YP_004598630.1| - 1e-21 76.6 0.1 2e-21 75.7 0.0 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_C_2 PF13410.1 gi|336255523|ref|YP_004598630.1| - 1.3e-13 50.6 0.3 3.1e-13 49.4 0.2 1.7 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C_3 PF14497.1 gi|336255523|ref|YP_004598630.1| - 1.5e-08 34.9 0.0 3e-08 34.0 0.0 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C PF00043.20 gi|336255523|ref|YP_004598630.1| - 5.1e-07 29.5 0.0 1.1e-06 28.5 0.0 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_N_3 PF13417.1 gi|336255523|ref|YP_004598630.1| - 6.7e-07 29.4 0.1 2.3e-05 24.5 0.0 2.4 1 1 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Na_H_antiporter PF03553.9 gi|336255524|ref|YP_004598631.1| - 1.8e-30 106.0 45.3 1.7e-16 60.1 17.9 2.5 1 1 1 2 2 2 2 Na+/H+ antiporter family TRAM PF01938.15 gi|336255525|ref|YP_004598632.1| - 1.4e-06 27.9 0.3 1.9e-06 27.5 0.2 1.3 1 0 0 1 1 1 1 TRAM domain N6_N4_Mtase PF01555.13 gi|336255526|ref|YP_004598633.1| - 2.5e-11 43.5 0.0 1.2e-07 31.4 0.0 2.2 2 0 0 2 2 2 2 DNA methylase Methyltransf_26 PF13659.1 gi|336255526|ref|YP_004598633.1| - 3.2e-10 40.0 0.0 4.9e-10 39.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|336255526|ref|YP_004598633.1| - 0.0038 16.8 0.0 0.011 15.3 0.0 1.7 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 TrkA_N PF02254.13 gi|336255527|ref|YP_004598634.1| - 1.2e-25 89.7 1.0 1.3e-25 89.6 0.2 1.5 2 0 0 2 2 1 1 TrkA-N domain TrkA_C PF02080.16 gi|336255527|ref|YP_004598634.1| - 5.6e-14 51.4 0.1 1.1e-13 50.4 0.1 1.6 1 0 0 1 1 1 1 TrkA-C domain UDPG_MGDP_dh_N PF03721.9 gi|336255527|ref|YP_004598634.1| - 4e-06 26.3 0.0 9.3e-06 25.1 0.0 1.6 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_7 PF13241.1 gi|336255527|ref|YP_004598634.1| - 2.4e-05 24.5 0.0 4.7e-05 23.5 0.0 1.6 1 0 0 1 1 1 1 Putative NAD(P)-binding Saccharop_dh PF03435.13 gi|336255527|ref|YP_004598634.1| - 0.0003 19.8 0.1 0.00038 19.5 0.1 1.1 1 0 0 1 1 1 1 Saccharopine dehydrogenase NAD_binding_10 PF13460.1 gi|336255527|ref|YP_004598634.1| - 0.00033 20.7 0.2 0.00052 20.0 0.1 1.3 1 0 0 1 1 1 1 NADH(P)-binding ApbA PF02558.11 gi|336255527|ref|YP_004598634.1| - 0.00071 19.0 0.0 0.0062 15.9 0.0 2.1 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA NAD_binding_2 PF03446.10 gi|336255527|ref|YP_004598634.1| - 0.00072 19.4 0.2 0.0052 16.6 0.0 2.2 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.13 gi|336255527|ref|YP_004598634.1| - 0.0009 18.9 0.1 0.0014 18.2 0.0 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IlvN PF07991.7 gi|336255527|ref|YP_004598634.1| - 0.0038 16.6 0.0 0.0065 15.8 0.0 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain 2-Hacid_dh_C PF02826.14 gi|336255527|ref|YP_004598634.1| - 0.0048 16.0 0.0 0.0079 15.3 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XdhC_C PF13478.1 gi|336255527|ref|YP_004598634.1| - 0.0074 16.6 0.1 0.021 15.1 0.0 1.7 2 0 0 2 2 2 1 XdhC Rossmann domain ThiF PF00899.16 gi|336255527|ref|YP_004598634.1| - 0.013 15.3 0.4 0.032 14.0 0.1 1.8 2 0 0 2 2 2 0 ThiF family DAO PF01266.19 gi|336255527|ref|YP_004598634.1| - 0.013 14.4 0.0 0.015 14.2 0.0 1.3 1 0 0 1 1 1 0 FAD dependent oxidoreductase F420_oxidored PF03807.12 gi|336255527|ref|YP_004598634.1| - 0.071 13.5 0.1 0.26 11.7 0.0 2.0 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent AdoHcyase_NAD PF00670.16 gi|336255527|ref|YP_004598634.1| - 0.074 12.8 0.1 0.11 12.3 0.1 1.4 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|336255527|ref|YP_004598634.1| - 0.086 13.3 0.0 0.13 12.7 0.0 1.4 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold AlaDh_PNT_C PF01262.16 gi|336255527|ref|YP_004598634.1| - 0.13 11.7 0.1 0.23 11.0 0.0 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Xan_ur_permease PF00860.15 gi|336255528|ref|YP_004598635.1| - 6e-38 130.3 45.0 9e-38 129.7 31.2 1.3 1 0 0 1 1 1 1 Permease family GST_N_3 PF13417.1 gi|336255529|ref|YP_004598636.1| - 1.6e-15 57.0 0.0 1.8e-15 56.8 0.0 1.0 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Glutaredoxin PF00462.19 gi|336255529|ref|YP_004598636.1| - 7.7e-14 51.4 0.0 1.1e-13 50.9 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin GST_N_2 PF13409.1 gi|336255529|ref|YP_004598636.1| - 8.2e-12 44.9 0.0 9.4e-12 44.7 0.0 1.0 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain DUF836 PF05768.9 gi|336255529|ref|YP_004598636.1| - 0.00073 19.7 0.1 0.00086 19.5 0.1 1.3 1 1 0 1 1 1 1 Glutaredoxin-like domain (DUF836) GST_N PF02798.15 gi|336255529|ref|YP_004598636.1| - 0.005 16.9 0.0 0.0065 16.6 0.0 1.2 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Thioredoxin_2 PF13098.1 gi|336255529|ref|YP_004598636.1| - 0.014 15.5 0.0 0.02 15.0 0.0 1.6 1 1 0 1 1 1 0 Thioredoxin-like domain ArsC PF03960.10 gi|336255529|ref|YP_004598636.1| - 0.15 12.1 0.0 0.16 12.0 0.0 1.2 1 0 0 1 1 1 0 ArsC family MFS_1 PF07690.11 gi|336255530|ref|YP_004598637.1| - 1.3e-44 152.4 75.1 2.4e-33 115.3 33.5 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily HTH_3 PF01381.17 gi|336255531|ref|YP_004598638.1| - 5e-07 29.4 0.0 9e-07 28.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|336255531|ref|YP_004598638.1| - 1.5e-05 25.1 0.3 5.9e-05 23.1 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|336255531|ref|YP_004598638.1| - 3.6e-05 23.7 0.0 6.4e-05 22.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|336255531|ref|YP_004598638.1| - 0.00049 19.6 0.0 0.0012 18.4 0.0 1.7 1 0 0 1 1 1 1 HTH domain HTH_23 PF13384.1 gi|336255531|ref|YP_004598638.1| - 0.0094 15.5 0.0 0.024 14.2 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_25 PF13413.1 gi|336255531|ref|YP_004598638.1| - 0.011 15.2 0.3 0.025 14.2 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_28 PF13518.1 gi|336255531|ref|YP_004598638.1| - 0.037 14.0 0.0 0.089 12.8 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|336255531|ref|YP_004598638.1| - 0.041 13.1 0.0 0.093 12.0 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_AraC PF00165.18 gi|336255531|ref|YP_004598638.1| - 0.087 12.6 0.0 0.17 11.7 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_10 PF04967.7 gi|336255531|ref|YP_004598638.1| - 0.12 12.0 0.0 0.22 11.1 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain DUF1743 PF08489.6 gi|336255532|ref|YP_004598639.1| - 4e-37 126.5 0.0 7.7e-37 125.6 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1743) DUF4131 PF13567.1 gi|336255532|ref|YP_004598639.1| - 0.034 13.5 0.0 0.06 12.7 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) OrfB_Zn_ribbon PF07282.6 gi|336255532|ref|YP_004598639.1| - 0.035 13.7 0.7 0.073 12.7 0.5 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain tRNA_anti-codon PF01336.20 gi|336255532|ref|YP_004598639.1| - 0.065 13.0 0.0 0.33 10.8 0.0 2.1 1 1 0 1 1 1 0 OB-fold nucleic acid binding domain Zn_Tnp_IS1595 PF12760.2 gi|336255532|ref|YP_004598639.1| - 0.093 12.5 1.7 0.28 11.0 1.1 1.8 1 0 0 1 1 1 0 Transposase zinc-ribbon domain C1_1 PF00130.17 gi|336255532|ref|YP_004598639.1| - 0.11 12.2 0.2 0.22 11.2 0.1 1.4 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zinc-ribbons_6 PF07191.7 gi|336255532|ref|YP_004598639.1| - 0.16 11.8 0.8 0.32 10.8 0.6 1.5 1 0 0 1 1 1 0 zinc-ribbons Aida_C2 PF14186.1 gi|336255534|ref|YP_004598641.1| - 0.13 11.4 0.0 0.13 11.4 0.0 1.1 1 0 0 1 1 1 0 Cytoskeletal adhesion MMR_HSR1 PF01926.18 gi|336255536|ref|YP_004598643.1| - 7.2e-20 71.0 0.0 1.2e-19 70.3 0.0 1.6 1 1 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|336255536|ref|YP_004598643.1| - 9e-15 54.2 0.9 1.1e-11 44.2 0.0 2.3 2 0 0 2 2 2 2 Ferrous iron transport protein B TGS PF02824.16 gi|336255536|ref|YP_004598643.1| - 6.2e-13 48.3 0.0 1.1e-12 47.6 0.0 1.4 1 0 0 1 1 1 1 TGS domain Dynamin_N PF00350.18 gi|336255536|ref|YP_004598643.1| - 5e-05 23.1 0.3 0.1 12.4 0.1 2.6 2 0 0 2 2 2 2 Dynamin family GTP_EFTU PF00009.22 gi|336255536|ref|YP_004598643.1| - 0.00024 20.6 0.0 0.0027 17.1 0.0 2.4 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain Miro PF08477.8 gi|336255536|ref|YP_004598643.1| - 0.00074 19.9 0.1 0.003 18.0 0.0 2.2 2 1 1 3 3 2 1 Miro-like protein ABC_tran PF00005.22 gi|336255536|ref|YP_004598643.1| - 0.0016 18.7 0.1 0.13 12.6 0.0 2.4 2 0 0 2 2 2 1 ABC transporter AIG1 PF04548.11 gi|336255536|ref|YP_004598643.1| - 0.0018 17.3 0.1 0.0036 16.4 0.0 1.5 2 0 0 2 2 2 1 AIG1 family ArgK PF03308.11 gi|336255536|ref|YP_004598643.1| - 0.002 16.9 1.4 0.26 10.0 0.0 3.2 3 1 0 3 3 3 1 ArgK protein DUF258 PF03193.11 gi|336255536|ref|YP_004598643.1| - 0.0068 15.6 0.0 0.041 13.0 0.0 2.3 2 0 0 2 2 2 1 Protein of unknown function, DUF258 Arf PF00025.16 gi|336255536|ref|YP_004598643.1| - 0.021 14.0 0.1 1.2 8.3 0.0 2.6 1 1 1 2 2 2 0 ADP-ribosylation factor family ThiS PF02597.15 gi|336255536|ref|YP_004598643.1| - 0.024 15.0 0.6 0.16 12.4 0.1 2.6 2 1 0 2 2 2 0 ThiS family Ras PF00071.17 gi|336255536|ref|YP_004598643.1| - 0.033 13.5 0.0 0.33 10.3 0.0 2.4 1 1 0 1 1 1 0 Ras family SRPRB PF09439.5 gi|336255536|ref|YP_004598643.1| - 0.083 12.1 0.5 0.14 11.3 0.0 1.7 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit Na_H_antiporter PF03553.9 gi|336255537|ref|YP_004598644.1| - 1.3e-61 208.2 35.6 9.6e-61 205.4 16.9 3.2 1 1 1 2 2 2 1 Na+/H+ antiporter family DUF401 PF04165.7 gi|336255537|ref|YP_004598644.1| - 0.015 14.3 8.7 0.04 12.9 6.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF401) Peptidase_S15 PF02129.13 gi|336255537|ref|YP_004598644.1| - 0.096 12.0 0.1 0.16 11.3 0.0 1.4 1 0 0 1 1 1 0 X-Pro dipeptidyl-peptidase (S15 family) Glyoxalase_2 PF12681.2 gi|336255538|ref|YP_004598645.1| - 8.5e-24 84.2 7.3 4.6e-14 52.9 0.3 2.1 2 0 0 2 2 2 2 Glyoxalase-like domain Glyoxalase PF00903.20 gi|336255538|ref|YP_004598645.1| - 2.1e-20 73.0 4.9 9.4e-12 45.0 0.3 2.2 2 0 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.1 gi|336255538|ref|YP_004598645.1| - 5e-12 45.8 4.5 7.7e-07 29.1 0.1 4.0 2 2 1 3 3 3 3 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.1 gi|336255538|ref|YP_004598645.1| - 3.7e-05 23.6 2.4 0.054 13.3 0.3 3.7 2 2 1 3 3 3 2 Glyoxalase-like domain Abhydrolase_3 PF07859.8 gi|336255539|ref|YP_004598646.1| - 1.1e-19 70.9 1.8 8.8e-12 45.0 0.4 2.4 2 1 0 2 2 2 2 alpha/beta hydrolase fold Peptidase_S9 PF00326.16 gi|336255539|ref|YP_004598646.1| - 1.1e-14 54.2 0.2 2.5e-09 36.6 0.0 2.2 1 1 1 2 2 2 2 Prolyl oligopeptidase family Abhydrolase_5 PF12695.2 gi|336255539|ref|YP_004598646.1| - 1.5e-12 47.4 0.2 2.3e-12 46.8 0.2 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family COesterase PF00135.23 gi|336255539|ref|YP_004598646.1| - 4.7e-10 38.7 0.3 8.1e-09 34.7 0.2 2.2 1 1 0 1 1 1 1 Carboxylesterase family Peptidase_S15 PF02129.13 gi|336255539|ref|YP_004598646.1| - 0.00034 20.1 0.8 0.037 13.4 0.3 2.9 2 1 1 3 3 3 1 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_6 PF12697.2 gi|336255539|ref|YP_004598646.1| - 0.0024 17.8 6.5 0.0064 16.3 4.5 1.7 1 1 0 1 1 1 1 Alpha/beta hydrolase family AXE1 PF05448.7 gi|336255539|ref|YP_004598646.1| - 0.0044 15.5 0.1 0.26 9.7 0.0 2.1 2 0 0 2 2 2 1 Acetyl xylan esterase (AXE1) Abhydrolase_2 PF02230.11 gi|336255539|ref|YP_004598646.1| - 0.007 15.8 0.1 0.018 14.5 0.0 1.6 2 0 0 2 2 2 1 Phospholipase/Carboxylesterase DUF2048 PF09752.4 gi|336255539|ref|YP_004598646.1| - 0.041 12.7 0.0 0.064 12.1 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2048) DLH PF01738.13 gi|336255539|ref|YP_004598646.1| - 0.055 12.7 0.1 0.17 11.1 0.0 1.9 2 0 0 2 2 2 0 Dienelactone hydrolase family Esterase_phd PF10503.4 gi|336255539|ref|YP_004598646.1| - 0.11 11.7 4.7 0.44 9.7 1.0 3.2 3 1 0 3 3 3 0 Esterase PHB depolymerase DUF2920 PF11144.3 gi|336255539|ref|YP_004598646.1| - 0.25 10.2 0.0 4.3 6.2 0.0 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF2920) HTH_20 PF12840.2 gi|336255540|ref|YP_004598647.1| - 5.2e-06 26.1 0.2 9.3e-06 25.3 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain SNase PF00565.12 gi|336255541|ref|YP_004598648.1| - 7.3e-12 45.5 0.0 1.2e-11 44.8 0.0 1.3 1 0 0 1 1 1 1 Staphylococcal nuclease homologue ABC_transp_aux PF09822.4 gi|336255541|ref|YP_004598648.1| - 1.3e-08 34.6 0.0 8.8e-05 22.0 0.0 2.3 2 0 0 2 2 2 2 ABC-type uncharacterized transport system DUF4350 PF14258.1 gi|336255541|ref|YP_004598648.1| - 7.1e-08 32.5 4.1 0.00017 21.7 0.2 3.4 3 0 0 3 3 3 2 Domain of unknown function (DUF4350) DUF1102 PF06510.6 gi|336255541|ref|YP_004598648.1| - 0.00037 20.3 0.2 0.00077 19.2 0.1 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1102) DUF4159 PF13709.1 gi|336255541|ref|YP_004598648.1| - 0.065 12.3 0.0 0.25 10.4 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4159) Aldo_ket_red PF00248.16 gi|336255542|ref|YP_004598649.1| - 1.6e-62 210.8 0.0 2.1e-62 210.5 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family PAP2 PF01569.16 gi|336255544|ref|YP_004598651.1| - 2.7e-14 52.9 8.2 2.9e-14 52.8 4.7 1.8 1 1 1 2 2 2 1 PAP2 superfamily PAP2_3 PF14378.1 gi|336255544|ref|YP_004598651.1| - 1.9e-12 47.1 10.3 2.8e-12 46.5 7.1 1.2 1 0 0 1 1 1 1 PAP2 superfamily PAP2_C PF14360.1 gi|336255544|ref|YP_004598651.1| - 0.00058 20.0 3.1 0.0018 18.4 2.1 1.8 1 0 0 1 1 1 1 PAP2 superfamily C-terminal DUF1772 PF08592.6 gi|336255544|ref|YP_004598651.1| - 0.007 16.1 9.3 0.034 13.8 0.9 2.6 1 1 1 2 2 2 2 Domain of unknown function (DUF1772) DUF606 PF04657.8 gi|336255544|ref|YP_004598651.1| - 4.4 7.3 10.3 1.3 9.1 0.1 2.6 2 1 1 3 3 3 0 Protein of unknown function, DUF606 Sulfatase PF00884.18 gi|336255545|ref|YP_004598652.1| - 1.2e-47 162.6 0.0 1.6e-47 162.2 0.0 1.2 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|336255545|ref|YP_004598652.1| - 7.2e-14 51.8 1.0 5.5e-07 29.2 0.0 2.3 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase Pr_beta_C PF12465.3 gi|336255545|ref|YP_004598652.1| - 0.016 14.4 0.2 0.028 13.6 0.1 1.4 1 0 0 1 1 1 0 Proteasome beta subunits C terminal UPF0104 PF03706.8 gi|336255546|ref|YP_004598653.1| - 7e-38 130.5 33.2 8.9e-38 130.2 23.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) Got1 PF04178.7 gi|336255546|ref|YP_004598653.1| - 2.3 8.3 14.1 0.049 13.7 3.0 2.7 2 1 0 2 2 2 0 Got1/Sft2-like family SNARE_assoc PF09335.6 gi|336255547|ref|YP_004598654.1| - 4.3e-14 52.7 3.8 6.7e-14 52.1 2.6 1.3 1 0 0 1 1 1 1 SNARE associated Golgi protein DUF457 PF04307.9 gi|336255548|ref|YP_004598655.1| - 4.8e-17 61.7 10.9 6.3e-17 61.3 7.6 1.1 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) DUF457 PF04307.9 gi|336255549|ref|YP_004598656.1| - 1.1e-15 57.2 11.6 1.5e-15 56.8 8.0 1.3 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) Arylsulfotran_2 PF14269.1 gi|336255550|ref|YP_004598657.1| - 1.6e-10 40.6 0.7 8.4e-09 34.9 0.5 2.4 1 1 0 1 1 1 1 Arylsulfotransferase (ASST) Arylsulfotrans PF05935.6 gi|336255550|ref|YP_004598657.1| - 1.8e-08 33.3 1.9 1.4e-07 30.4 0.6 2.6 1 1 0 2 2 2 1 Arylsulfotransferase (ASST) TruB_C PF09142.6 gi|336255550|ref|YP_004598657.1| - 0.13 11.9 1.1 10 5.8 0.0 2.5 2 0 0 2 2 2 0 tRNA Pseudouridine synthase II, C terminal MSC PF09402.5 gi|336255550|ref|YP_004598657.1| - 0.13 10.9 2.5 0.19 10.4 1.7 1.2 1 0 0 1 1 1 0 Man1-Src1p-C-terminal domain NHL PF01436.16 gi|336255550|ref|YP_004598657.1| - 0.23 11.4 2.2 16 5.6 0.0 3.5 3 0 0 3 3 3 0 NHL repeat Sulfatase PF00884.18 gi|336255553|ref|YP_004598660.1| - 0.055 12.6 0.0 0.072 12.2 0.0 1.2 1 0 0 1 1 1 0 Sulfatase Metalloenzyme PF01676.13 gi|336255553|ref|YP_004598660.1| - 0.13 11.6 0.0 0.24 10.7 0.0 1.4 1 0 0 1 1 1 0 Metalloenzyme superfamily Glycos_transf_1 PF00534.15 gi|336255554|ref|YP_004598661.1| - 1.7e-16 60.1 0.0 8.5e-15 54.5 0.0 2.7 2 1 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|336255554|ref|YP_004598661.1| - 1.8e-12 47.5 0.0 5.4e-11 42.7 0.0 2.6 2 1 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|336255554|ref|YP_004598661.1| - 4.1e-07 30.2 0.1 6.2e-07 29.6 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|336255554|ref|YP_004598661.1| - 8.6e-06 25.5 0.0 1.3e-05 25.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|336255554|ref|YP_004598661.1| - 0.046 13.9 0.0 0.15 12.3 0.0 1.9 1 1 0 1 1 1 0 Glycosyl transferases group 1 Glycos_transf_1 PF00534.15 gi|336255555|ref|YP_004598662.1| - 9.1e-24 83.7 0.0 1.6e-23 83.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|336255555|ref|YP_004598662.1| - 1.1e-19 70.8 0.0 5.6e-19 68.6 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|336255555|ref|YP_004598662.1| - 3.8e-12 46.6 1.0 5.9e-12 46.0 0.1 1.7 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.1 gi|336255555|ref|YP_004598662.1| - 1.1e-09 38.2 0.0 2.4e-09 37.1 0.0 1.5 1 1 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_4 PF13439.1 gi|336255555|ref|YP_004598662.1| - 4.1e-09 36.3 0.0 8.7e-09 35.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|336255555|ref|YP_004598662.1| - 7.3e-07 29.3 0.1 2.3e-06 27.7 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 DUF1508 PF07411.7 gi|336255556|ref|YP_004598663.1| - 9.1e-50 165.8 0.0 3.9e-07 29.3 0.0 11.7 12 0 0 12 12 12 9 Domain of unknown function (DUF1508) DDE_Tnp_IS240 PF13610.1 gi|336255556|ref|YP_004598663.1| - 0.00084 19.3 7.8 9.2 6.2 0.0 6.7 7 0 0 7 7 7 2 DDE domain DUF1523 PF07509.6 gi|336255556|ref|YP_004598663.1| - 0.037 13.2 0.8 0.99 8.6 0.0 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1523) PAS_3 PF08447.6 gi|336255556|ref|YP_004598663.1| - 0.94 9.6 5.2 3.1 7.9 0.0 4.1 5 0 0 5 5 5 0 PAS fold Cdc6_C PF09079.6 gi|336255557|ref|YP_004598664.1| - 5.9e-20 70.7 0.1 1.1e-19 69.9 0.1 1.4 1 0 0 1 1 1 1 CDC6, C terminal AAA_22 PF13401.1 gi|336255557|ref|YP_004598664.1| - 2.6e-10 40.5 0.0 8.5e-10 38.8 0.0 1.9 1 1 1 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|336255557|ref|YP_004598664.1| - 1.2e-09 38.4 1.8 1.6e-08 34.7 0.0 2.7 2 1 0 2 2 2 1 AAA ATPase domain Arch_ATPase PF01637.13 gi|336255557|ref|YP_004598664.1| - 8.2e-05 22.4 0.0 0.00015 21.5 0.0 1.5 1 0 0 1 1 1 1 Archaeal ATPase NACHT PF05729.7 gi|336255557|ref|YP_004598664.1| - 0.00042 20.0 0.0 0.00074 19.2 0.0 1.4 1 0 0 1 1 1 1 NACHT domain DUF815 PF05673.8 gi|336255557|ref|YP_004598664.1| - 0.00088 18.2 0.0 0.0017 17.3 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA PF00004.24 gi|336255557|ref|YP_004598664.1| - 0.001 19.2 0.0 0.005 17.0 0.0 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.17 gi|336255557|ref|YP_004598664.1| - 0.0015 17.4 0.0 0.0023 16.8 0.0 1.2 1 0 0 1 1 1 1 NB-ARC domain TCTP PF00838.12 gi|336255557|ref|YP_004598664.1| - 0.0042 17.0 0.1 0.085 12.8 0.0 2.4 2 0 0 2 2 2 1 Translationally controlled tumour protein AAA_32 PF13654.1 gi|336255557|ref|YP_004598664.1| - 0.018 13.7 0.4 0.38 9.3 0.0 2.3 2 1 0 2 2 2 0 AAA domain RNA_helicase PF00910.17 gi|336255557|ref|YP_004598664.1| - 0.02 15.0 0.0 0.042 14.0 0.0 1.6 1 0 0 1 1 1 0 RNA helicase PIF1 PF05970.9 gi|336255557|ref|YP_004598664.1| - 0.023 13.6 0.0 0.042 12.7 0.0 1.3 1 0 0 1 1 1 0 PIF1-like helicase AAA_14 PF13173.1 gi|336255557|ref|YP_004598664.1| - 0.037 13.9 0.0 0.13 12.1 0.0 1.9 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|336255557|ref|YP_004598664.1| - 0.062 12.8 0.6 0.17 11.4 0.2 2.0 2 1 0 2 2 2 0 AAA domain TrwB_AAD_bind PF10412.4 gi|336255557|ref|YP_004598664.1| - 0.077 11.6 0.0 3.2 6.2 0.0 2.2 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain ABC_tran PF00005.22 gi|336255557|ref|YP_004598664.1| - 0.11 12.8 0.0 7.9 6.7 0.0 2.5 2 0 0 2 2 2 0 ABC transporter Miro PF08477.8 gi|336255557|ref|YP_004598664.1| - 0.14 12.6 0.0 0.51 10.8 0.0 1.9 2 0 0 2 2 2 0 Miro-like protein MMPL PF03176.10 gi|336255558|ref|YP_004598665.1| - 6.2e-38 130.3 22.0 3.1e-20 72.1 2.5 2.7 3 0 0 3 3 3 2 MMPL family Sterol-sensing PF12349.3 gi|336255558|ref|YP_004598665.1| - 3.9e-15 55.6 11.8 1.7e-07 30.8 0.1 2.6 2 1 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation Patched PF02460.13 gi|336255558|ref|YP_004598665.1| - 7.3e-14 50.6 15.2 3.2e-07 28.6 2.6 2.1 2 0 0 2 2 2 2 Patched family UDPG_MGDP_dh_N PF03721.9 gi|336255558|ref|YP_004598665.1| - 0.095 12.0 0.2 0.24 10.7 0.1 1.6 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NPCBM_assoc PF10633.4 gi|336255559|ref|YP_004598666.1| - 1.7e-18 66.3 15.8 0.00014 21.8 2.3 6.1 5 3 0 5 5 5 4 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.6 gi|336255559|ref|YP_004598666.1| - 3.7e-16 59.0 2.7 5.2e-05 23.2 0.1 4.4 4 0 0 4 4 4 4 CARDB Transglut_C PF00927.17 gi|336255559|ref|YP_004598666.1| - 2e-06 27.8 0.0 0.29 11.1 0.0 4.1 5 0 0 5 5 5 2 Transglutaminase family, C-terminal ig like domain Fn3-like PF14310.1 gi|336255559|ref|YP_004598666.1| - 0.0021 17.9 7.1 1.1 9.2 0.0 5.6 7 0 0 7 7 7 2 Fibronectin type III-like domain E1_DerP2_DerF2 PF02221.10 gi|336255559|ref|YP_004598666.1| - 0.0065 16.7 0.1 0.15 12.3 0.0 3.2 4 1 0 4 4 4 1 ML domain DUF4625 PF15418.1 gi|336255559|ref|YP_004598666.1| - 0.0071 16.4 0.3 0.13 12.3 0.0 2.9 2 2 0 2 2 2 1 Domain of unknown function (DUF4625) VPEP PF07589.6 gi|336255559|ref|YP_004598666.1| - 0.14 12.0 1.7 0.28 11.1 1.2 1.5 1 0 0 1 1 1 0 PEP-CTERM motif Pyr_redox_2 PF07992.9 gi|336255560|ref|YP_004598667.1| - 1.4e-22 80.5 0.0 2.5e-22 79.7 0.0 1.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Glutaredoxin PF00462.19 gi|336255560|ref|YP_004598667.1| - 3.6e-19 68.5 0.1 9.8e-19 67.1 0.0 1.8 1 0 0 1 1 1 1 Glutaredoxin Pyr_redox PF00070.22 gi|336255560|ref|YP_004598667.1| - 4.3e-14 52.6 2.2 1e-12 48.2 0.3 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|336255560|ref|YP_004598667.1| - 1.4e-10 41.6 0.0 4.9e-09 36.5 0.0 2.4 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|336255560|ref|YP_004598667.1| - 1.4e-06 27.4 0.3 0.0021 17.0 0.0 2.4 2 0 0 2 2 2 2 FAD dependent oxidoreductase DUF836 PF05768.9 gi|336255560|ref|YP_004598667.1| - 0.00013 22.1 0.0 0.00038 20.6 0.0 1.8 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) NAD_binding_7 PF13241.1 gi|336255560|ref|YP_004598667.1| - 0.00074 19.7 0.0 0.011 16.0 0.0 2.5 3 0 0 3 3 3 1 Putative NAD(P)-binding HI0933_like PF03486.9 gi|336255560|ref|YP_004598667.1| - 0.0008 17.9 0.3 1.2 7.5 0.0 2.9 4 0 0 4 4 4 2 HI0933-like protein GST_N_3 PF13417.1 gi|336255560|ref|YP_004598667.1| - 0.0015 18.7 0.0 0.0027 17.8 0.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain NAD_binding_8 PF13450.1 gi|336255560|ref|YP_004598667.1| - 0.0015 18.4 0.1 0.0072 16.3 0.0 2.2 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|336255560|ref|YP_004598667.1| - 0.0043 15.9 2.4 0.14 10.9 0.0 3.1 2 1 0 3 3 3 1 FAD binding domain SH3BGR PF04908.10 gi|336255560|ref|YP_004598667.1| - 0.0077 16.1 0.0 0.017 15.0 0.0 1.6 1 0 0 1 1 1 1 SH3-binding, glutamic acid-rich protein Thioredoxin_3 PF13192.1 gi|336255560|ref|YP_004598667.1| - 0.04 13.7 0.1 0.43 10.4 0.0 2.6 2 0 0 2 2 2 0 Thioredoxin domain Thi4 PF01946.12 gi|336255560|ref|YP_004598667.1| - 0.054 12.5 0.0 0.56 9.2 0.0 2.3 2 0 0 2 2 2 0 Thi4 family DUF389 PF04087.9 gi|336255561|ref|YP_004598668.1| - 9.4e-26 90.4 27.8 1e-25 90.2 16.4 2.4 3 0 0 3 3 3 1 Domain of unknown function (DUF389) Propep_M14 PF02244.11 gi|336255561|ref|YP_004598668.1| - 0.03 13.9 0.3 1.1 8.9 0.1 2.6 1 1 1 2 2 2 0 Carboxypeptidase activation peptide Chlorosome_CsmC PF11098.3 gi|336255561|ref|YP_004598668.1| - 2.6 7.7 8.6 1.9 8.1 2.5 2.8 1 1 1 2 2 2 0 Chlorosome envelope protein C DUF357 PF04010.8 gi|336255562|ref|YP_004598669.1| - 4.5e-30 103.1 0.1 5.1e-30 102.9 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF357) Cas_Cas1 PF01867.11 gi|336255562|ref|YP_004598669.1| - 0.11 11.6 0.0 0.11 11.6 0.0 1.1 1 0 0 1 1 1 0 CRISPR associated protein Cas1 FAA_hydrolase PF01557.13 gi|336255563|ref|YP_004598670.1| - 1.8e-66 223.7 0.1 2.1e-66 223.4 0.1 1.0 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family Gluconate_2-dh3 PF13618.1 gi|336255564|ref|YP_004598671.1| - 0.14 12.2 0.1 0.15 12.2 0.1 1.0 1 0 0 1 1 1 0 Gluconate 2-dehydrogenase subunit 3 CENP-B_dimeris PF09026.5 gi|336255564|ref|YP_004598671.1| - 0.57 10.4 4.2 0.54 10.5 2.9 1.0 1 0 0 1 1 1 0 Centromere protein B dimerisation domain CCDC-167 PF15188.1 gi|336255564|ref|YP_004598671.1| - 1.9 8.4 5.6 2.3 8.2 3.8 1.0 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 167 TOBE PF03459.12 gi|336255565|ref|YP_004598672.1| - 3.9e-12 46.0 5.4 1.7e-11 44.0 0.3 3.4 2 2 1 3 3 3 1 TOBE domain HTH_1 PF00126.22 gi|336255565|ref|YP_004598672.1| - 4e-06 26.4 0.1 1.8e-05 24.3 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family ABC_tran PF00005.22 gi|336255566|ref|YP_004598673.1| - 1.8e-33 115.7 0.0 2.5e-33 115.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|336255566|ref|YP_004598673.1| - 7.3e-10 39.2 0.0 0.0006 19.8 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|336255566|ref|YP_004598673.1| - 7.6e-07 29.2 0.3 1.2e-06 28.6 0.2 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|336255566|ref|YP_004598673.1| - 8.3e-05 22.0 0.0 0.0007 19.0 0.0 2.2 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|336255566|ref|YP_004598673.1| - 0.00011 21.7 0.0 0.087 12.2 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain SMC_N PF02463.14 gi|336255566|ref|YP_004598673.1| - 0.00012 21.4 0.1 0.022 13.9 0.0 2.2 2 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_17 PF13207.1 gi|336255566|ref|YP_004598673.1| - 0.00023 21.9 0.7 0.00041 21.1 0.4 1.9 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|336255566|ref|YP_004598673.1| - 0.00033 19.8 0.0 0.00061 19.0 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|336255566|ref|YP_004598673.1| - 0.00055 20.0 0.0 0.0017 18.4 0.0 1.9 1 1 0 1 1 1 1 AAA domain MobB PF03205.9 gi|336255566|ref|YP_004598673.1| - 0.0023 17.6 0.1 0.038 13.6 0.0 2.2 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_18 PF13238.1 gi|336255566|ref|YP_004598673.1| - 0.0027 17.9 0.0 0.0085 16.4 0.0 1.9 2 0 0 2 2 2 1 AAA domain SbcCD_C PF13558.1 gi|336255566|ref|YP_004598673.1| - 0.0031 17.4 0.5 0.049 13.5 0.4 2.4 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_25 PF13481.1 gi|336255566|ref|YP_004598673.1| - 0.0052 16.1 0.0 0.011 15.1 0.0 1.7 1 0 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.18 gi|336255566|ref|YP_004598673.1| - 0.017 15.0 0.0 0.034 14.1 0.0 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_28 PF13521.1 gi|336255566|ref|YP_004598673.1| - 0.025 14.5 0.0 0.093 12.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|336255566|ref|YP_004598673.1| - 0.08 12.7 0.4 6.2 6.6 0.1 2.5 2 0 0 2 2 2 0 Part of AAA domain AAA_14 PF13173.1 gi|336255566|ref|YP_004598673.1| - 0.081 12.8 0.0 0.16 11.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|336255566|ref|YP_004598673.1| - 0.082 12.7 0.0 0.21 11.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|336255566|ref|YP_004598673.1| - 0.096 12.3 0.0 0.18 11.4 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_23 PF13476.1 gi|336255566|ref|YP_004598673.1| - 0.13 12.5 0.0 0.15 12.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.17 gi|336255567|ref|YP_004598674.1| - 6.3e-13 48.6 11.8 6.3e-13 48.6 8.2 1.4 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component SPC12 PF06645.8 gi|336255567|ref|YP_004598674.1| - 3.1 7.6 6.8 4.4 7.1 0.1 3.2 4 0 0 4 4 4 0 Microsomal signal peptidase 12 kDa subunit (SPC12) PBP_like_2 PF12849.2 gi|336255568|ref|YP_004598675.1| - 4.7e-25 88.6 2.4 5.8e-25 88.3 1.6 1.1 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.1 gi|336255568|ref|YP_004598675.1| - 1.1e-08 35.0 0.1 6.4e-08 32.5 0.1 1.9 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like PF12727.2 gi|336255568|ref|YP_004598675.1| - 0.00019 20.4 0.1 0.00037 19.4 0.0 1.5 1 0 0 1 1 1 1 PBP superfamily domain Phosphonate-bd PF12974.2 gi|336255568|ref|YP_004598675.1| - 0.034 13.5 0.1 0.37 10.1 0.0 2.4 1 1 0 1 1 1 0 ABC transporter, phosphonate, periplasmic substrate-binding protein Orbi_VP6 PF01516.11 gi|336255568|ref|YP_004598675.1| - 0.35 9.9 3.9 0.54 9.2 2.7 1.2 1 0 0 1 1 1 0 Orbivirus helicase VP6 TAT_signal PF10518.4 gi|336255568|ref|YP_004598675.1| - 0.55 10.3 4.0 0.69 10.0 1.3 2.3 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence PadR PF03551.9 gi|336255569|ref|YP_004598676.1| - 5.8e-14 51.6 0.1 7e-14 51.3 0.1 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.1 gi|336255569|ref|YP_004598676.1| - 0.00041 20.1 0.1 0.00057 19.6 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DUF1495 PF07381.6 gi|336255569|ref|YP_004598676.1| - 0.0022 17.6 0.0 0.0029 17.2 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) HTH_34 PF13601.1 gi|336255569|ref|YP_004598676.1| - 0.0056 16.6 0.0 0.0073 16.3 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_27 PF13463.1 gi|336255569|ref|YP_004598676.1| - 0.009 16.3 0.0 0.011 16.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF4364 PF14277.1 gi|336255569|ref|YP_004598676.1| - 0.019 14.6 0.0 0.023 14.3 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) Mrr_N PF14338.1 gi|336255569|ref|YP_004598676.1| - 0.02 14.9 0.0 0.029 14.4 0.0 1.6 1 1 0 1 1 1 0 Mrr N-terminal domain DUF2250 PF10007.4 gi|336255569|ref|YP_004598676.1| - 0.1 12.5 0.1 3.6 7.5 0.0 2.2 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) FUR PF01475.14 gi|336255569|ref|YP_004598676.1| - 0.11 12.4 0.0 0.13 12.2 0.0 1.1 1 0 0 1 1 1 0 Ferric uptake regulator family PAC2 PF09754.4 gi|336255570|ref|YP_004598677.1| - 4.6e-46 157.4 0.0 5.3e-46 157.2 0.0 1.0 1 0 0 1 1 1 1 PAC2 family Methyltransf_11 PF08241.7 gi|336255571|ref|YP_004598678.1| - 0.01 16.2 0.1 0.028 14.9 0.0 1.9 1 1 0 1 1 1 0 Methyltransferase domain Nol1_Nop2_Fmu PF01189.12 gi|336255572|ref|YP_004598679.1| - 1.2e-51 175.8 0.0 1.3e-51 175.6 0.0 1.0 1 0 0 1 1 1 1 NOL1/NOP2/sun family Methyltransf_31 PF13847.1 gi|336255572|ref|YP_004598679.1| - 1.7e-05 24.4 0.0 2.4e-05 23.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|336255572|ref|YP_004598679.1| - 0.0001 22.3 0.1 0.00019 21.4 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|336255572|ref|YP_004598679.1| - 0.00036 21.1 0.1 0.0009 19.8 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain FtsJ PF01728.14 gi|336255572|ref|YP_004598679.1| - 0.01 15.8 0.0 0.019 14.9 0.0 1.5 1 1 0 1 1 1 0 FtsJ-like methyltransferase Nol1_Nop2_Fmu_2 PF13636.1 gi|336255573|ref|YP_004598680.1| - 2.7e-15 56.3 0.0 1.4e-14 53.9 0.0 1.9 1 1 0 1 1 1 1 pre-rRNA processing and ribosome biogenesis DrsE PF02635.10 gi|336255574|ref|YP_004598681.1| - 1.3e-16 60.7 0.1 1.4e-16 60.6 0.1 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family DrsE_2 PF13686.1 gi|336255574|ref|YP_004598681.1| - 0.00028 20.6 0.2 0.00055 19.7 0.1 1.3 1 1 0 1 1 1 1 DsrE/DsrF/DrsH-like family Abhydrolase_6 PF12697.2 gi|336255575|ref|YP_004598682.1| - 1.2e-21 77.6 1.7 1.5e-21 77.3 1.2 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|336255575|ref|YP_004598682.1| - 1.8e-08 34.2 0.0 3.2e-07 30.1 0.0 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|336255575|ref|YP_004598682.1| - 4.2e-07 29.8 0.0 1.2e-06 28.3 0.0 1.8 1 1 0 1 1 1 1 Alpha/beta hydrolase family Thioesterase PF00975.15 gi|336255575|ref|YP_004598682.1| - 0.00045 20.5 0.0 0.00074 19.8 0.0 1.3 1 0 0 1 1 1 1 Thioesterase domain DLH PF01738.13 gi|336255575|ref|YP_004598682.1| - 0.0015 17.8 0.0 0.36 10.0 0.0 2.1 2 0 0 2 2 2 2 Dienelactone hydrolase family Abhydrolase_4 PF08386.5 gi|336255575|ref|YP_004598682.1| - 0.019 14.8 0.0 0.033 14.0 0.0 1.4 1 0 0 1 1 1 0 TAP-like protein Glyoxalase PF00903.20 gi|336255576|ref|YP_004598683.1| - 3e-26 91.8 0.2 1.1e-15 57.7 0.0 2.5 2 1 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.2 gi|336255576|ref|YP_004598683.1| - 4.5e-12 46.5 3.3 1.4e-07 32.0 0.1 2.4 2 1 0 2 2 2 2 Glyoxalase-like domain Glyoxalase_4 PF13669.1 gi|336255576|ref|YP_004598683.1| - 0.0094 15.9 0.5 3.2 7.8 0.3 3.0 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DUF790 PF05626.6 gi|336255577|ref|YP_004598684.1| - 3.1e-97 325.4 0.0 3.6e-97 325.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF790) DisA_N PF02457.11 gi|336255578|ref|YP_004598685.1| - 6.8e-07 28.4 0.1 2.6e-06 26.5 0.0 1.8 1 1 0 1 1 1 1 DisA bacterial checkpoint controller nucleotide-binding ResIII PF04851.10 gi|336255579|ref|YP_004598686.1| - 9.3e-26 90.7 0.0 1.4e-23 83.6 0.0 2.4 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.26 gi|336255579|ref|YP_004598686.1| - 4.9e-15 55.1 0.0 1.1e-14 54.0 0.0 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|336255579|ref|YP_004598686.1| - 1.9e-08 33.9 0.0 7.4e-08 32.0 0.0 1.9 1 1 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C_2 PF13307.1 gi|336255579|ref|YP_004598686.1| - 0.03 14.2 0.0 12 5.8 0.0 3.0 3 0 0 3 3 3 0 Helicase C-terminal domain Response_reg PF00072.19 gi|336255580|ref|YP_004598687.1| - 1.7e-19 69.8 0.0 2.2e-19 69.5 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain Response_reg PF00072.19 gi|336255581|ref|YP_004598688.1| - 6.2e-17 61.6 0.4 7.3e-17 61.3 0.3 1.1 1 0 0 1 1 1 1 Response regulator receiver domain GrpE PF01025.14 gi|336255582|ref|YP_004598689.1| - 5.1e-44 149.7 11.4 5.1e-44 149.7 7.9 2.3 1 1 1 2 2 2 1 GrpE Reo_sigmaC PF04582.7 gi|336255582|ref|YP_004598689.1| - 6.2e-05 22.3 1.5 6.2e-05 22.3 1.0 1.6 2 0 0 2 2 2 1 Reovirus sigma C capsid protein TMF_DNA_bd PF12329.3 gi|336255582|ref|YP_004598689.1| - 0.00015 21.4 11.3 0.00015 21.4 7.8 3.0 2 2 1 3 3 2 1 TATA element modulatory factor 1 DNA binding Spc7 PF08317.6 gi|336255582|ref|YP_004598689.1| - 0.00039 19.2 14.1 0.00039 19.2 9.8 1.7 1 1 1 2 2 2 1 Spc7 kinetochore protein Med9 PF07544.8 gi|336255582|ref|YP_004598689.1| - 0.00064 19.4 16.5 0.0085 15.8 0.6 3.7 2 1 2 4 4 3 2 RNA polymerase II transcription mediator complex subunit 9 ADIP PF11559.3 gi|336255582|ref|YP_004598689.1| - 0.0014 18.5 11.7 0.0031 17.4 8.1 1.6 1 0 0 1 1 1 1 Afadin- and alpha -actinin-Binding DUF948 PF06103.6 gi|336255582|ref|YP_004598689.1| - 0.0015 18.3 6.3 0.058 13.2 0.7 3.0 2 1 1 3 3 3 1 Bacterial protein of unknown function (DUF948) Sipho_Gp157 PF05565.6 gi|336255582|ref|YP_004598689.1| - 0.0031 17.1 17.7 0.0069 15.9 1.4 2.6 1 1 1 2 2 2 2 Siphovirus Gp157 IFT57 PF10498.4 gi|336255582|ref|YP_004598689.1| - 0.0036 16.1 6.0 0.0036 16.1 4.2 3.3 2 1 1 3 3 2 1 Intra-flagellar transport protein 57 Atg14 PF10186.4 gi|336255582|ref|YP_004598689.1| - 0.0039 16.1 17.7 0.0081 15.1 12.3 1.5 1 1 0 1 1 1 1 UV radiation resistance protein and autophagy-related subunit 14 AAA_13 PF13166.1 gi|336255582|ref|YP_004598689.1| - 0.0039 15.7 12.1 0.0069 14.9 8.4 1.4 1 0 0 1 1 1 1 AAA domain GldM_N PF12081.3 gi|336255582|ref|YP_004598689.1| - 0.0065 16.0 8.6 0.62 9.5 0.2 2.4 1 1 1 2 2 2 2 GldM N-terminal domain Syntaxin PF00804.20 gi|336255582|ref|YP_004598689.1| - 0.014 15.5 16.4 0.17 12.0 3.1 2.5 1 1 1 2 2 2 0 Syntaxin GvpL_GvpF PF06386.6 gi|336255582|ref|YP_004598689.1| - 0.014 15.0 12.6 0.023 14.2 8.7 1.4 1 0 0 1 1 1 0 Gas vesicle synthesis protein GvpL/GvpF DUF2130 PF09903.4 gi|336255582|ref|YP_004598689.1| - 0.032 12.9 0.5 0.032 12.9 0.3 2.2 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2130) TMP_2 PF06791.8 gi|336255582|ref|YP_004598689.1| - 0.034 13.7 1.0 0.058 13.0 0.5 1.5 1 1 0 1 1 1 0 Prophage tail length tape measure protein DUF3584 PF12128.3 gi|336255582|ref|YP_004598689.1| - 0.045 11.0 23.3 0.069 10.4 16.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Bacillus_HBL PF05791.6 gi|336255582|ref|YP_004598689.1| - 0.079 12.3 9.3 2.2 7.6 2.5 2.6 1 1 1 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) FliJ PF02050.11 gi|336255582|ref|YP_004598689.1| - 0.092 12.8 16.1 0.17 11.9 10.7 1.8 1 1 0 1 1 1 0 Flagellar FliJ protein Laminin_II PF06009.7 gi|336255582|ref|YP_004598689.1| - 0.1 12.3 10.8 0.71 9.6 0.8 2.4 1 1 1 2 2 2 0 Laminin Domain II TMCO5 PF14992.1 gi|336255582|ref|YP_004598689.1| - 0.12 11.5 19.2 0.2 10.7 13.3 1.5 1 0 0 1 1 1 0 TMCO5 family Mod_r PF07200.8 gi|336255582|ref|YP_004598689.1| - 0.14 12.1 15.1 0.23 11.3 10.1 1.7 1 1 0 1 1 1 0 Modifier of rudimentary (Mod(r)) protein IncA PF04156.9 gi|336255582|ref|YP_004598689.1| - 0.17 11.4 28.7 0.84 9.2 19.9 1.9 1 1 0 1 1 1 0 IncA protein Rootletin PF15035.1 gi|336255582|ref|YP_004598689.1| - 0.23 11.4 23.9 0.21 11.5 5.9 2.8 1 1 1 2 2 2 0 Ciliary rootlet component, centrosome cohesion Fib_alpha PF08702.5 gi|336255582|ref|YP_004598689.1| - 0.36 10.9 10.2 1.5 8.8 6.0 2.3 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family Spc42p PF11544.3 gi|336255582|ref|YP_004598689.1| - 0.57 10.1 0.1 0.57 10.1 0.0 3.4 3 1 0 3 3 2 0 Spindle pole body component Spc42p SNARE PF05739.14 gi|336255582|ref|YP_004598689.1| - 0.62 9.7 12.4 0.46 10.2 1.1 4.0 2 2 2 4 4 4 0 SNARE domain TBPIP PF07106.8 gi|336255582|ref|YP_004598689.1| - 0.73 9.3 15.3 0.76 9.3 9.1 2.0 1 1 1 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) NPV_P10 PF05531.7 gi|336255582|ref|YP_004598689.1| - 0.75 10.0 10.2 2.9 8.2 2.1 3.6 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein ATG16 PF08614.6 gi|336255582|ref|YP_004598689.1| - 0.76 9.5 28.5 0.026 14.3 13.5 2.7 2 1 1 3 3 3 0 Autophagy protein 16 (ATG16) DUF1664 PF07889.7 gi|336255582|ref|YP_004598689.1| - 0.86 9.4 9.2 0.36 10.6 2.8 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) Mnd1 PF03962.10 gi|336255582|ref|YP_004598689.1| - 0.88 9.2 20.7 3.7 7.1 14.3 2.1 1 1 0 1 1 1 0 Mnd1 family FlaC_arch PF05377.6 gi|336255582|ref|YP_004598689.1| - 0.88 9.5 10.2 1 9.3 0.2 3.5 2 1 1 3 3 3 0 Flagella accessory protein C (FlaC) COG2 PF06148.6 gi|336255582|ref|YP_004598689.1| - 0.91 9.3 13.5 0.17 11.7 4.3 2.6 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF641 PF04859.7 gi|336255582|ref|YP_004598689.1| - 1.1 9.0 11.6 1.1 9.0 6.1 2.3 1 1 1 2 2 2 0 Plant protein of unknown function (DUF641) AATF-Che1 PF13339.1 gi|336255582|ref|YP_004598689.1| - 1.1 9.4 15.8 89 3.2 10.9 3.3 1 1 1 2 2 2 0 Apoptosis antagonizing transcription factor Prefoldin_2 PF01920.15 gi|336255582|ref|YP_004598689.1| - 1.1 9.0 22.8 0.25 11.1 5.9 3.5 2 1 0 3 3 3 0 Prefoldin subunit TMPIT PF07851.8 gi|336255582|ref|YP_004598689.1| - 1.6 7.7 11.5 0.16 11.0 3.7 1.9 1 1 1 2 2 2 0 TMPIT-like protein DUF745 PF05335.8 gi|336255582|ref|YP_004598689.1| - 2 7.9 16.8 2.7 7.4 10.7 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF745) FUSC PF04632.7 gi|336255582|ref|YP_004598689.1| - 2.1 6.6 6.4 3 6.1 4.5 1.3 1 0 0 1 1 1 0 Fusaric acid resistance protein family Borrelia_REV PF03978.8 gi|336255582|ref|YP_004598689.1| - 2.2 7.9 7.2 8.8 6.0 2.7 2.5 1 1 1 2 2 2 0 Borrelia burgdorferi REV protein Bap31 PF05529.7 gi|336255582|ref|YP_004598689.1| - 3.1 7.2 18.2 8.2 5.8 1.5 3.3 1 1 1 2 2 2 0 B-cell receptor-associated protein 31-like Prominin PF05478.6 gi|336255582|ref|YP_004598689.1| - 3.4 5.0 6.3 4.8 4.5 0.4 1.8 1 1 1 2 2 2 0 Prominin DinB PF05163.7 gi|336255582|ref|YP_004598689.1| - 4.3 7.0 8.7 2.4 7.8 3.4 2.2 2 0 0 2 2 2 0 DinB family DUF4279 PF14106.1 gi|336255582|ref|YP_004598689.1| - 4.6 7.1 12.9 6.4 6.6 0.4 3.9 1 1 3 4 4 4 0 Domain of unknown function (DUF4279) SlyX PF04102.7 gi|336255582|ref|YP_004598689.1| - 5.3 7.4 15.7 34 4.9 8.8 3.4 1 1 1 2 2 2 0 SlyX OmpH PF03938.9 gi|336255582|ref|YP_004598689.1| - 5.6 6.8 22.9 39 4.1 15.9 2.2 1 1 0 1 1 1 0 Outer membrane protein (OmpH-like) Flagellin_C PF00700.16 gi|336255582|ref|YP_004598689.1| - 7.8 6.7 7.7 1 9.5 0.9 2.7 2 1 1 3 3 2 0 Bacterial flagellin C-terminal helical region DUF972 PF06156.8 gi|336255582|ref|YP_004598689.1| - 9.2 6.6 16.6 14 6.0 0.4 3.2 1 1 2 3 3 3 0 Protein of unknown function (DUF972) CENP-Q PF13094.1 gi|336255582|ref|YP_004598689.1| - 9.5 6.2 25.1 1.1e+02 2.8 16.2 2.7 1 1 1 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit HSP70 PF00012.15 gi|336255583|ref|YP_004598690.1| - 1.3e-241 802.7 18.6 2e-239 795.5 12.9 2.0 1 1 0 1 1 1 1 Hsp70 protein MreB_Mbl PF06723.8 gi|336255583|ref|YP_004598690.1| - 7.8e-20 70.7 0.3 7.8e-20 70.7 0.2 1.8 2 1 0 2 2 2 1 MreB/Mbl protein Hydantoinase_A PF01968.13 gi|336255583|ref|YP_004598690.1| - 0.001 18.2 9.3 0.072 12.1 0.0 4.1 4 0 0 4 4 4 2 Hydantoinase/oxoprolinase StbA PF06406.6 gi|336255583|ref|YP_004598690.1| - 0.0071 15.3 0.0 0.053 12.4 0.0 2.3 2 0 0 2 2 2 1 StbA protein FGGY_C PF02782.11 gi|336255583|ref|YP_004598690.1| - 0.016 14.8 0.1 0.06 12.9 0.0 2.0 2 0 0 2 2 2 0 FGGY family of carbohydrate kinases, C-terminal domain FtsA PF14450.1 gi|336255583|ref|YP_004598690.1| - 0.089 12.6 5.9 8.6 6.2 0.0 4.5 3 1 0 3 3 3 0 Cell division protein FtsA TraF_2 PF13729.1 gi|336255583|ref|YP_004598690.1| - 1.3 7.7 7.6 1.3 7.7 4.4 1.6 1 1 0 1 1 1 0 F plasmid transfer operon, TraF, protein DUF2937 PF11157.3 gi|336255583|ref|YP_004598690.1| - 1.5 8.0 4.9 2.2 7.5 2.8 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF2937) PhyH PF05721.8 gi|336255583|ref|YP_004598690.1| - 2 8.4 4.4 2.6 8.0 1.4 2.2 2 0 0 2 2 2 0 Phytanoyl-CoA dioxygenase (PhyH) Bax1-I PF01027.15 gi|336255584|ref|YP_004598691.1| - 2.4 7.6 7.4 2.8 7.4 5.1 1.1 1 0 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 DUF4131 PF13567.1 gi|336255584|ref|YP_004598691.1| - 5.1 6.4 7.5 5.8 6.2 5.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) CTDII PF01556.13 gi|336255585|ref|YP_004598692.1| - 4.9e-35 119.2 0.0 4e-25 87.5 0.0 3.3 3 0 0 3 3 3 2 DnaJ C terminal domain DnaJ PF00226.26 gi|336255585|ref|YP_004598692.1| - 1.3e-25 88.9 2.9 2.7e-25 87.8 2.0 1.6 1 0 0 1 1 1 1 DnaJ domain DnaJ_CXXCXGXG PF00684.14 gi|336255585|ref|YP_004598692.1| - 1.4e-14 53.9 17.4 2.7e-14 52.9 12.1 1.6 1 0 0 1 1 1 1 DnaJ central domain DZR PF12773.2 gi|336255585|ref|YP_004598692.1| - 0.065 13.0 13.8 0.17 11.7 9.5 1.7 1 1 1 2 2 2 0 Double zinc ribbon A2L_zn_ribbon PF08792.5 gi|336255585|ref|YP_004598692.1| - 0.07 12.6 8.0 0.34 10.4 0.1 3.1 2 1 1 3 3 3 0 A2L zinc ribbon domain DUF2318 PF10080.4 gi|336255585|ref|YP_004598692.1| - 1.3 8.8 5.2 4.3 7.1 0.3 2.4 1 1 1 2 2 2 0 Predicted membrane protein (DUF2318) Sensor PF13796.1 gi|336255586|ref|YP_004598693.1| - 3.6e-38 130.9 29.0 4.8e-36 124.0 18.7 1.8 1 1 1 2 2 2 2 Putative sensor DJ-1_PfpI PF01965.19 gi|336255587|ref|YP_004598694.1| - 5e-34 116.8 0.0 5.9e-34 116.6 0.0 1.1 1 0 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|336255587|ref|YP_004598694.1| - 4.2e-14 52.1 0.0 6.5e-14 51.5 0.0 1.3 1 1 0 1 1 1 1 Putative amidotransferase GATase_3 PF07685.9 gi|336255587|ref|YP_004598694.1| - 0.00017 21.2 0.0 0.001 18.6 0.0 2.0 2 0 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.23 gi|336255587|ref|YP_004598694.1| - 0.0016 17.9 0.0 0.002 17.5 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I SnoaL_3 PF13474.1 gi|336255587|ref|YP_004598694.1| - 0.09 12.8 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 SnoaL-like domain Peptidase_C26 PF07722.8 gi|336255587|ref|YP_004598694.1| - 0.098 12.0 0.0 0.15 11.4 0.0 1.3 1 0 0 1 1 1 0 Peptidase C26 AMP-binding PF00501.23 gi|336255588|ref|YP_004598695.1| - 0.00032 19.2 0.1 0.066 11.5 0.0 2.1 2 0 0 2 2 2 2 AMP-binding enzyme DAO PF01266.19 gi|336255589|ref|YP_004598696.1| - 2.6e-44 151.6 0.3 3.4e-44 151.2 0.2 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Rieske PF00355.21 gi|336255589|ref|YP_004598696.1| - 9.8e-17 60.3 0.0 2.2e-16 59.2 0.0 1.5 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain FAD_binding_2 PF00890.19 gi|336255589|ref|YP_004598696.1| - 1.7e-06 27.1 0.0 2.9e-06 26.3 0.0 1.5 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.1 gi|336255589|ref|YP_004598696.1| - 4.6e-06 26.5 0.0 3.3e-05 23.8 0.0 2.4 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.14 gi|336255589|ref|YP_004598696.1| - 2.9e-05 23.2 1.8 4.4e-05 22.7 0.9 1.5 1 1 1 2 2 2 1 FAD binding domain Pyr_redox PF00070.22 gi|336255589|ref|YP_004598696.1| - 0.00028 21.2 0.3 0.00091 19.5 0.2 1.9 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|336255589|ref|YP_004598696.1| - 0.00064 19.6 0.1 0.0015 18.4 0.0 1.7 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|336255589|ref|YP_004598696.1| - 0.00081 18.5 0.0 0.0014 17.7 0.0 1.3 1 0 0 1 1 1 1 Thi4 family HI0933_like PF03486.9 gi|336255589|ref|YP_004598696.1| - 0.0021 16.5 0.1 0.0035 15.8 0.0 1.4 1 0 0 1 1 1 1 HI0933-like protein Trp_halogenase PF04820.9 gi|336255589|ref|YP_004598696.1| - 0.0088 14.7 0.5 0.013 14.1 0.3 1.2 1 0 0 1 1 1 1 Tryptophan halogenase FAD_oxidored PF12831.2 gi|336255589|ref|YP_004598696.1| - 0.043 12.8 3.0 0.069 12.2 1.3 1.7 1 1 0 2 2 2 0 FAD dependent oxidoreductase GIDA PF01134.17 gi|336255589|ref|YP_004598696.1| - 0.046 12.5 0.1 0.15 10.8 0.3 1.6 2 0 0 2 2 2 0 Glucose inhibited division protein A Pyr_redox_3 PF13738.1 gi|336255589|ref|YP_004598696.1| - 0.06 13.4 0.0 0.16 12.0 0.0 1.8 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Amino_oxidase PF01593.19 gi|336255589|ref|YP_004598696.1| - 0.082 11.9 0.4 0.42 9.6 0.1 2.0 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase Lycopene_cycl PF05834.7 gi|336255589|ref|YP_004598696.1| - 0.11 11.3 0.1 0.16 10.8 0.0 1.2 1 0 0 1 1 1 0 Lycopene cyclase protein NAD_binding_7 PF13241.1 gi|336255589|ref|YP_004598696.1| - 0.15 12.3 0.0 0.33 11.2 0.0 1.6 1 0 0 1 1 1 0 Putative NAD(P)-binding CcdA PF07362.7 gi|336255589|ref|YP_004598696.1| - 0.19 11.6 0.0 0.42 10.5 0.0 1.6 1 0 0 1 1 1 0 Post-segregation antitoxin CcdA Transket_pyr PF02779.19 gi|336255590|ref|YP_004598697.1| - 1.7e-41 141.6 0.0 2.3e-41 141.2 0.0 1.2 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.15 gi|336255590|ref|YP_004598697.1| - 7.3e-37 126.0 0.5 3.1e-36 124.0 0.1 2.2 2 0 0 2 2 2 1 Transketolase, C-terminal domain E1_dh PF00676.15 gi|336255591|ref|YP_004598698.1| - 2.1e-83 279.5 0.0 2.6e-83 279.1 0.0 1.0 1 0 0 1 1 1 1 Dehydrogenase E1 component DXP_synthase_N PF13292.1 gi|336255591|ref|YP_004598698.1| - 2.7e-05 23.2 0.0 4.5e-05 22.5 0.0 1.3 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase Transketolase_N PF00456.16 gi|336255591|ref|YP_004598698.1| - 4.4e-05 22.4 0.1 6.7e-05 21.8 0.0 1.2 1 0 0 1 1 1 1 Transketolase, thiamine diphosphate binding domain TPP_enzyme_C PF02775.16 gi|336255591|ref|YP_004598698.1| - 0.0075 15.8 0.8 0.027 14.0 0.6 1.9 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HTH_41 PF14502.1 gi|336255591|ref|YP_004598698.1| - 0.076 12.6 0.0 0.16 11.5 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Na_H_Exchanger PF00999.16 gi|336255593|ref|YP_004598700.1| - 3.1e-39 134.6 23.4 4.1e-39 134.2 16.2 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family YqhR PF11085.3 gi|336255593|ref|YP_004598700.1| - 0.067 12.7 0.4 0.067 12.7 0.3 2.6 3 0 0 3 3 3 0 Conserved membrane protein YqhR Pyr_redox_2 PF07992.9 gi|336255594|ref|YP_004598701.1| - 6.7e-18 65.3 1.0 3.1e-13 50.0 0.0 2.4 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|336255594|ref|YP_004598701.1| - 1.5e-16 60.2 0.5 4.9e-09 35.5 0.0 2.2 1 1 1 2 2 2 2 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|336255594|ref|YP_004598701.1| - 5.1e-11 41.6 0.0 3.2e-05 22.5 0.0 2.1 2 0 0 2 2 2 2 HI0933-like protein Pyr_redox_3 PF13738.1 gi|336255594|ref|YP_004598701.1| - 6.1e-10 39.4 0.7 3.8e-05 23.8 0.0 2.1 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|336255594|ref|YP_004598701.1| - 1e-08 34.6 2.1 3.8e-06 26.1 0.0 2.1 1 1 1 2 2 2 2 FAD binding domain FAD_binding_2 PF00890.19 gi|336255594|ref|YP_004598701.1| - 4.2e-08 32.4 1.6 2.5e-06 26.5 0.3 2.7 1 1 1 2 2 2 1 FAD binding domain NAD_binding_9 PF13454.1 gi|336255594|ref|YP_004598701.1| - 6.1e-08 32.5 0.1 0.0004 20.1 0.0 2.4 2 0 0 2 2 2 2 FAD-NAD(P)-binding GIDA PF01134.17 gi|336255594|ref|YP_004598701.1| - 4.7e-07 29.0 0.1 2.1e-05 23.5 0.0 2.1 1 1 1 2 2 2 1 Glucose inhibited division protein A Thi4 PF01946.12 gi|336255594|ref|YP_004598701.1| - 6.4e-06 25.4 0.3 3.6e-05 22.9 0.1 2.0 2 1 0 2 2 2 1 Thi4 family NAD_binding_8 PF13450.1 gi|336255594|ref|YP_004598701.1| - 2.7e-05 24.0 0.0 5.6e-05 23.0 0.0 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.22 gi|336255594|ref|YP_004598701.1| - 4.1e-05 23.9 0.5 0.0047 17.2 0.2 2.8 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|336255594|ref|YP_004598701.1| - 6.2e-05 22.2 2.7 0.00014 21.0 0.3 2.0 1 1 1 2 2 2 1 FAD dependent oxidoreductase K_oxygenase PF13434.1 gi|336255594|ref|YP_004598701.1| - 0.00022 20.2 0.1 0.21 10.4 0.0 2.1 1 1 1 2 2 2 2 L-lysine 6-monooxygenase (NADPH-requiring) Lycopene_cycl PF05834.7 gi|336255594|ref|YP_004598701.1| - 0.003 16.5 0.2 0.012 14.5 0.0 1.8 1 1 1 2 2 2 1 Lycopene cyclase protein 3HCDH_N PF02737.13 gi|336255594|ref|YP_004598701.1| - 0.0032 17.1 0.0 0.0049 16.5 0.0 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Amino_oxidase PF01593.19 gi|336255594|ref|YP_004598701.1| - 0.0087 15.1 0.0 0.014 14.4 0.0 1.3 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase FecR PF04773.8 gi|336255594|ref|YP_004598701.1| - 0.012 15.8 0.1 0.42 10.8 0.0 2.3 2 0 0 2 2 2 0 FecR protein Trp_halogenase PF04820.9 gi|336255594|ref|YP_004598701.1| - 0.017 13.7 2.1 1.1 7.7 0.1 2.1 2 0 0 2 2 2 0 Tryptophan halogenase Leucyl-specific PF14795.1 gi|336255594|ref|YP_004598701.1| - 0.021 14.6 0.2 2.1 8.2 0.1 2.3 2 0 0 2 2 2 0 Leucine-tRNA synthetase-specific domain UDPG_MGDP_dh_N PF03721.9 gi|336255594|ref|YP_004598701.1| - 0.079 12.3 0.0 0.15 11.4 0.0 1.5 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_7 PF13241.1 gi|336255594|ref|YP_004598701.1| - 0.11 12.7 0.0 0.17 12.1 0.0 1.5 1 1 0 1 1 1 0 Putative NAD(P)-binding AFOR_C PF01314.13 gi|336255596|ref|YP_004598703.1| - 1.6e-75 254.1 0.8 9e-75 251.7 0.6 2.0 1 1 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|336255596|ref|YP_004598703.1| - 2.5e-48 164.1 0.0 4e-48 163.4 0.0 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain Peptidase_M48 PF01435.13 gi|336255598|ref|YP_004598705.1| - 3e-26 92.3 0.0 5.8e-26 91.4 0.0 1.4 1 1 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|336255598|ref|YP_004598705.1| - 0.00082 18.4 0.0 0.0014 17.7 0.0 1.3 1 0 0 1 1 1 1 BlaR1 peptidase M56 DUF883 PF05957.8 gi|336255598|ref|YP_004598705.1| - 0.073 13.4 0.2 0.073 13.4 0.1 2.5 3 1 2 5 5 5 0 Bacterial protein of unknown function (DUF883) DUF485 PF04341.7 gi|336255598|ref|YP_004598705.1| - 0.36 10.5 2.3 1.3 8.8 1.6 1.9 1 0 0 1 1 1 0 Protein of unknown function, DUF485 DZR PF12773.2 gi|336255599|ref|YP_004598706.1| - 0.0019 17.9 7.8 0.49 10.2 5.4 2.3 1 1 0 1 1 1 1 Double zinc ribbon Zn_Tnp_IS1595 PF12760.2 gi|336255599|ref|YP_004598706.1| - 0.0044 16.7 8.3 0.13 12.0 0.3 2.4 2 0 0 2 2 2 2 Transposase zinc-ribbon domain Cytochrome_C7 PF14522.1 gi|336255599|ref|YP_004598706.1| - 0.046 13.3 7.2 0.1 12.2 5.0 1.7 1 1 0 1 1 1 0 Cytochrome c7 ArfGap PF01412.13 gi|336255599|ref|YP_004598706.1| - 0.13 12.0 1.8 0.2 11.4 0.1 2.0 1 1 1 2 2 2 0 Putative GTPase activating protein for Arf zinc-ribbons_6 PF07191.7 gi|336255599|ref|YP_004598706.1| - 0.19 11.5 6.2 0.66 9.8 0.2 2.6 2 1 0 2 2 2 0 zinc-ribbons zf-CHY PF05495.7 gi|336255599|ref|YP_004598706.1| - 0.2 11.8 4.3 0.11 12.6 0.4 2.0 1 1 1 2 2 2 0 CHY zinc finger C1_1 PF00130.17 gi|336255599|ref|YP_004598706.1| - 0.2 11.3 2.3 2.1 8.1 0.0 2.7 1 1 2 3 3 3 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Prok-RING_1 PF14446.1 gi|336255599|ref|YP_004598706.1| - 0.33 10.7 7.1 0.62 9.8 0.4 2.9 3 0 0 3 3 3 0 Prokaryotic RING finger family 1 zf-FPG_IleRS PF06827.9 gi|336255599|ref|YP_004598706.1| - 0.45 10.2 4.8 4.3 7.0 0.9 2.4 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS Nudix_N_2 PF14803.1 gi|336255599|ref|YP_004598706.1| - 0.48 10.1 14.7 8.6 6.1 0.1 4.0 3 1 0 3 3 3 0 Nudix N-terminal Zn-ribbon_8 PF09723.5 gi|336255599|ref|YP_004598706.1| - 0.54 10.2 12.7 3.9 7.5 0.0 3.9 3 1 0 4 4 4 0 Zinc ribbon domain A2L_zn_ribbon PF08792.5 gi|336255599|ref|YP_004598706.1| - 0.82 9.2 10.2 0.29 10.6 1.6 3.0 3 1 0 3 3 3 0 A2L zinc ribbon domain zf-dskA_traR PF01258.12 gi|336255599|ref|YP_004598706.1| - 1.2 8.9 12.1 0.87 9.3 0.5 3.5 4 0 0 4 4 4 0 Prokaryotic dksA/traR C4-type zinc finger Cytochrom_c3_2 PF14537.1 gi|336255599|ref|YP_004598706.1| - 1.5 9.2 6.3 4.9 7.5 4.4 2.0 1 1 0 1 1 1 0 Cytochrome c3 ZZ PF00569.12 gi|336255599|ref|YP_004598706.1| - 2 8.0 5.9 7.3 6.2 0.5 3.0 3 1 0 3 3 3 0 Zinc finger, ZZ type NinF PF05810.7 gi|336255599|ref|YP_004598706.1| - 2.2 8.1 4.2 2 8.2 0.1 2.3 3 0 0 3 3 3 0 NinF protein DNA_RNApol_7kD PF03604.8 gi|336255599|ref|YP_004598706.1| - 2.3 7.7 9.4 27 4.3 0.0 3.5 3 1 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit Tnp_zf-ribbon_2 PF13842.1 gi|336255599|ref|YP_004598706.1| - 2.8 8.3 9.9 12 6.4 0.1 3.4 3 1 0 3 3 3 0 DDE_Tnp_1-like zinc-ribbon zf-C3HC4_3 PF13920.1 gi|336255599|ref|YP_004598706.1| - 3.6 7.3 7.7 0.91 9.2 1.7 2.5 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) OrfB_Zn_ribbon PF07282.6 gi|336255599|ref|YP_004598706.1| - 3.8 7.2 10.7 0.33 10.6 0.8 2.5 2 1 0 2 2 2 0 Putative transposase DNA-binding domain PADR1 PF08063.7 gi|336255599|ref|YP_004598706.1| - 3.9 6.9 6.6 0.47 9.8 0.4 2.3 3 0 0 3 3 3 0 PADR1 (NUC008) domain zf-ribbon_3 PF13248.1 gi|336255599|ref|YP_004598706.1| - 4 6.7 7.5 28 4.0 0.1 3.6 4 0 0 4 4 4 0 zinc-ribbon domain DUF164 PF02591.10 gi|336255599|ref|YP_004598706.1| - 4.1 7.3 8.8 0.59 10.0 0.8 2.5 1 1 1 3 3 3 0 Putative zinc ribbon domain FYVE PF01363.16 gi|336255599|ref|YP_004598706.1| - 7 6.6 9.1 1.2 9.0 1.3 2.5 2 2 0 2 2 2 0 FYVE zinc finger DnaJ_CXXCXGXG PF00684.14 gi|336255599|ref|YP_004598706.1| - 8 6.5 11.2 3.3 7.8 1.0 2.7 2 2 0 2 2 2 0 DnaJ central domain Acetyltransf_1 PF00583.19 gi|336255600|ref|YP_004598707.1| - 9.7e-10 38.3 0.1 1.6e-09 37.6 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_CG PF14542.1 gi|336255600|ref|YP_004598707.1| - 0.00013 21.8 0.0 0.00027 20.7 0.0 1.6 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_7 PF13508.1 gi|336255600|ref|YP_004598707.1| - 0.0017 18.5 0.0 0.0025 17.9 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|336255600|ref|YP_004598707.1| - 0.0066 16.5 0.0 0.0092 16.0 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|336255600|ref|YP_004598707.1| - 0.014 15.5 0.1 0.02 15.0 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain MM_CoA_mutase PF01642.17 gi|336255601|ref|YP_004598708.1| - 1.1e-210 700.1 1.0 1.3e-210 699.9 0.7 1.0 1 0 0 1 1 1 1 Methylmalonyl-CoA mutase GSDH PF07995.6 gi|336255602|ref|YP_004598709.1| - 1.5e-33 116.2 0.7 5.1e-33 114.5 0.2 2.0 2 0 0 2 2 2 1 Glucose / Sorbosone dehydrogenase Copper-bind PF00127.15 gi|336255602|ref|YP_004598709.1| - 4.5e-09 36.4 0.6 1.1e-08 35.2 0.0 1.9 2 0 0 2 2 2 1 Copper binding proteins, plastocyanin/azurin family NHL PF01436.16 gi|336255602|ref|YP_004598709.1| - 0.0081 16.0 0.4 10 6.2 0.0 3.8 3 0 0 3 3 3 2 NHL repeat TAT_signal PF10518.4 gi|336255602|ref|YP_004598709.1| - 0.78 9.9 2.5 1.7 8.8 1.7 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Aldo_ket_red PF00248.16 gi|336255603|ref|YP_004598710.1| - 1.3e-66 224.3 0.0 1.5e-66 224.1 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family Glyoxalase_4 PF13669.1 gi|336255604|ref|YP_004598711.1| - 3.6e-19 68.7 0.2 4.2e-19 68.5 0.1 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase PF00903.20 gi|336255604|ref|YP_004598711.1| - 9.2e-13 48.2 0.3 1e-12 48.1 0.2 1.0 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.2 gi|336255604|ref|YP_004598711.1| - 2.1e-10 41.1 0.2 2.3e-10 41.0 0.1 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_3 PF13468.1 gi|336255604|ref|YP_004598711.1| - 6.5e-07 29.4 1.2 7.4e-07 29.2 0.8 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain FAD_binding_6 PF00970.19 gi|336255605|ref|YP_004598712.1| - 1.3e-12 47.7 0.0 1.7e-12 47.3 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain adh_short PF00106.20 gi|336255605|ref|YP_004598712.1| - 0.032 14.1 1.3 0.047 13.6 0.9 1.2 1 0 0 1 1 1 0 short chain dehydrogenase DUF1537 PF07005.6 gi|336255605|ref|YP_004598712.1| - 0.057 13.0 3.6 0.086 12.5 2.2 1.5 1 1 0 1 1 1 0 Protein of unknown function, DUF1537 PALP PF00291.20 gi|336255605|ref|YP_004598712.1| - 0.061 12.5 0.0 0.072 12.3 0.0 1.2 1 0 0 1 1 1 0 Pyridoxal-phosphate dependent enzyme Oxidored_nitro PF00148.14 gi|336255605|ref|YP_004598712.1| - 0.1 11.2 0.5 0.13 10.8 0.3 1.1 1 0 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase AAA_19 PF13245.1 gi|336255605|ref|YP_004598712.1| - 0.11 12.2 1.2 0.15 11.8 0.0 1.8 2 0 0 2 2 2 0 Part of AAA domain POR_N PF01855.14 gi|336255606|ref|YP_004598713.1| - 5.4e-59 199.4 0.2 8.9e-59 198.7 0.1 1.3 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.13 gi|336255606|ref|YP_004598713.1| - 9e-42 142.9 0.1 1.7e-41 141.9 0.1 1.5 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_N PF02776.13 gi|336255606|ref|YP_004598713.1| - 2.1e-07 30.5 0.2 3.7e-07 29.7 0.1 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|336255607|ref|YP_004598714.1| - 1.2e-31 109.3 0.3 1.9e-31 108.7 0.2 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.3 gi|336255607|ref|YP_004598714.1| - 2.8e-16 59.2 0.6 5.3e-16 58.2 0.4 1.5 1 0 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal Aminotran_1_2 PF00155.16 gi|336255609|ref|YP_004598716.1| - 1.1e-59 202.2 0.0 1.2e-59 202.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|336255609|ref|YP_004598716.1| - 4.7e-14 52.2 0.1 1e-13 51.0 0.0 1.5 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|336255609|ref|YP_004598716.1| - 9.4e-12 44.6 0.0 1.9e-11 43.6 0.0 1.4 2 0 0 2 2 2 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|336255609|ref|YP_004598716.1| - 2.6e-07 29.2 0.0 3.4e-07 28.8 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.14 gi|336255609|ref|YP_004598716.1| - 6.8e-07 28.3 0.0 8.2e-07 28.0 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V ADH_zinc_N_2 PF13602.1 gi|336255610|ref|YP_004598717.1| - 1.3e-16 61.6 0.3 1.3e-16 61.6 0.2 1.9 2 1 0 2 2 2 1 Zinc-binding dehydrogenase ADH_zinc_N PF00107.21 gi|336255610|ref|YP_004598717.1| - 4.2e-15 55.4 0.3 7.5e-15 54.6 0.2 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|336255610|ref|YP_004598717.1| - 4.8e-13 48.8 0.1 3.5e-11 42.8 0.0 2.3 1 1 1 2 2 2 2 Alcohol dehydrogenase GroES-like domain DUF2493 PF10686.4 gi|336255610|ref|YP_004598717.1| - 0.57 9.7 3.8 0.77 9.3 1.7 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF2493) DUF2423 PF10338.4 gi|336255611|ref|YP_004598718.1| - 0.078 12.9 0.0 0.15 12.0 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2423) FAD-oxidase_C PF02913.14 gi|336255612|ref|YP_004598719.1| - 2.3e-54 184.3 0.2 3e-54 183.9 0.2 1.2 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.18 gi|336255612|ref|YP_004598719.1| - 6.4e-41 139.0 0.1 1.1e-40 138.3 0.1 1.4 1 0 0 1 1 1 1 FAD binding domain UCR_Fe-S_N PF10399.4 gi|336255613|ref|YP_004598720.1| - 0.018 14.1 0.2 0.032 13.3 0.1 1.4 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Subtilosin_A PF11420.3 gi|336255613|ref|YP_004598720.1| - 0.1 12.6 2.1 0.21 11.6 1.4 1.4 1 0 0 1 1 1 0 Bacteriocin subtilosin A TPP_enzyme_N PF02776.13 gi|336255614|ref|YP_004598721.1| - 3.3e-49 166.6 1.0 9.6e-49 165.1 0.2 2.0 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|336255614|ref|YP_004598721.1| - 5.9e-24 84.3 0.0 3.8e-23 81.7 0.0 2.3 2 1 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|336255614|ref|YP_004598721.1| - 2e-16 60.0 0.4 5.4e-16 58.5 0.1 1.9 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain UbiA PF01040.13 gi|336255615|ref|YP_004598722.1| - 1.2e-12 47.6 24.9 1.8e-12 47.0 17.3 1.3 1 1 0 1 1 1 1 UbiA prenyltransferase family Acetyltransf_1 PF00583.19 gi|336255617|ref|YP_004598724.1| - 3.5e-16 58.9 0.1 4.8e-16 58.5 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|336255617|ref|YP_004598724.1| - 7.7e-11 42.0 0.0 1e-10 41.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|336255617|ref|YP_004598724.1| - 7.6e-10 39.1 0.1 8.7e-10 38.9 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|336255617|ref|YP_004598724.1| - 2.6e-08 33.9 0.0 3.1e-08 33.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|336255617|ref|YP_004598724.1| - 6.5e-07 29.0 0.0 1.3e-06 28.0 0.0 1.5 1 1 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.1 gi|336255617|ref|YP_004598724.1| - 6.9e-06 26.0 0.2 8.6e-06 25.6 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|336255617|ref|YP_004598724.1| - 0.0063 16.3 0.0 0.012 15.5 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_6 PF13480.1 gi|336255617|ref|YP_004598724.1| - 0.025 14.5 0.4 0.067 13.1 0.2 1.7 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain GNAT_acetyltr_2 PF13718.1 gi|336255617|ref|YP_004598724.1| - 0.096 11.9 0.1 0.099 11.9 0.0 1.3 1 1 0 1 1 1 0 GNAT acetyltransferase 2 MMR_HSR1_C PF08438.5 gi|336255618|ref|YP_004598725.1| - 3.6e-32 110.8 0.0 5.7e-32 110.1 0.0 1.3 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.18 gi|336255618|ref|YP_004598725.1| - 1.1e-16 60.7 0.0 3e-16 59.4 0.0 1.8 1 1 0 1 1 1 1 50S ribosome-binding GTPase TGS PF02824.16 gi|336255618|ref|YP_004598725.1| - 2.8e-13 49.4 0.0 6.1e-13 48.3 0.0 1.6 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.13 gi|336255618|ref|YP_004598725.1| - 6.1e-10 38.6 0.0 6.6e-07 28.7 0.0 3.2 3 0 0 3 3 3 1 Ferrous iron transport protein B MR_MLE PF01188.16 gi|336255618|ref|YP_004598725.1| - 0.0061 17.0 0.3 0.037 14.5 0.1 2.4 3 0 0 3 3 3 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain GTP_EFTU PF00009.22 gi|336255618|ref|YP_004598725.1| - 0.0095 15.3 0.1 0.31 10.4 0.0 2.8 3 0 0 3 3 3 1 Elongation factor Tu GTP binding domain DUF2267 PF10025.4 gi|336255619|ref|YP_004598726.1| - 2.4e-32 111.6 3.8 2.7e-32 111.4 2.6 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2267) Acetyltransf_4 PF13420.1 gi|336255620|ref|YP_004598727.1| - 6e-15 55.5 0.0 8.2e-15 55.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|336255620|ref|YP_004598727.1| - 5.6e-14 51.9 0.1 1e-13 51.0 0.1 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|336255620|ref|YP_004598727.1| - 2.1e-09 37.5 0.0 3.5e-09 36.7 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|336255620|ref|YP_004598727.1| - 1.7e-08 34.7 0.1 2.6e-08 34.1 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|336255620|ref|YP_004598727.1| - 1.2e-06 28.5 0.0 3e-06 27.2 0.0 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|336255620|ref|YP_004598727.1| - 0.00038 20.3 0.1 0.00066 19.5 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|336255620|ref|YP_004598727.1| - 0.0045 16.8 0.0 0.01 15.7 0.0 1.6 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.1 gi|336255620|ref|YP_004598727.1| - 0.0085 15.9 0.0 0.017 14.9 0.0 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain HTH_20 PF12840.2 gi|336255620|ref|YP_004598727.1| - 0.09 12.5 0.1 0.2 11.5 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain SprA-related PF12118.3 gi|336255621|ref|YP_004598728.1| - 2.9 7.1 4.1 0.96 8.7 0.0 2.0 2 0 0 2 2 2 0 SprA-related family HTH_10 PF04967.7 gi|336255622|ref|YP_004598729.1| - 4.1e-19 67.8 0.2 7.3e-19 67.1 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain MarR_2 PF12802.2 gi|336255622|ref|YP_004598729.1| - 0.00097 18.7 0.1 0.0031 17.1 0.0 1.9 2 0 0 2 2 2 1 MarR family Sigma70_r3 PF04539.11 gi|336255622|ref|YP_004598729.1| - 0.0014 18.4 0.2 0.13 12.1 0.0 2.5 2 0 0 2 2 2 1 Sigma-70 region 3 HTH_24 PF13412.1 gi|336255622|ref|YP_004598729.1| - 0.0028 17.0 0.0 0.0079 15.5 0.0 1.8 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|336255622|ref|YP_004598729.1| - 0.008 15.9 0.0 0.11 12.2 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|336255622|ref|YP_004598729.1| - 0.028 14.2 0.0 0.074 12.9 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix HTH_AsnC-type PF13404.1 gi|336255622|ref|YP_004598729.1| - 0.052 13.1 2.7 0.053 13.0 0.1 2.4 3 0 0 3 3 3 0 AsnC-type helix-turn-helix domain UPF0122 PF04297.9 gi|336255622|ref|YP_004598729.1| - 0.088 12.8 0.4 0.94 9.5 0.0 2.3 2 1 1 3 3 3 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_11 PF08279.7 gi|336255622|ref|YP_004598729.1| - 0.11 12.1 0.4 0.63 9.7 0.0 2.3 2 1 0 2 2 2 0 HTH domain HTH_28 PF13518.1 gi|336255622|ref|YP_004598729.1| - 0.13 12.2 0.0 0.54 10.3 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain YbgT_YccB PF08173.6 gi|336255624|ref|YP_004598731.1| - 0.31 10.9 0.1 0.31 10.9 0.1 2.1 2 0 0 2 2 2 0 Membrane bound YbgT-like protein Phage_integrase PF00589.17 gi|336255627|ref|YP_004598734.1| - 8.5e-11 41.8 0.0 7.1e-10 38.8 0.0 2.4 2 1 0 2 2 2 1 Phage integrase family Phage_int_SAM_1 PF02899.12 gi|336255627|ref|YP_004598734.1| - 1.1e-08 35.1 0.2 3.2e-08 33.5 0.1 1.7 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.1 gi|336255627|ref|YP_004598734.1| - 0.00023 21.4 0.1 0.0057 16.9 0.1 2.4 1 1 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain HTH_40 PF14493.1 gi|336255627|ref|YP_004598734.1| - 0.13 12.4 0.0 0.39 10.9 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain PadR PF03551.9 gi|336255628|ref|YP_004598735.1| - 6.3e-12 45.0 0.7 1.2e-11 44.1 0.5 1.5 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family DUF1495 PF07381.6 gi|336255628|ref|YP_004598735.1| - 0.0034 17.0 0.0 0.0046 16.6 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) HTH_45 PF14947.1 gi|336255628|ref|YP_004598735.1| - 0.0035 17.1 0.0 0.0059 16.3 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DUF505 PF04458.7 gi|336255628|ref|YP_004598735.1| - 0.0051 14.9 0.0 0.0058 14.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF505) MarR_2 PF12802.2 gi|336255628|ref|YP_004598735.1| - 0.015 14.9 1.1 0.16 11.6 0.1 2.7 2 1 1 3 3 3 0 MarR family HTH_27 PF13463.1 gi|336255628|ref|YP_004598735.1| - 0.016 15.5 0.3 0.034 14.4 0.2 1.8 1 1 0 1 1 1 0 Winged helix DNA-binding domain MotA_activ PF09114.5 gi|336255628|ref|YP_004598735.1| - 0.018 14.7 0.0 0.026 14.2 0.0 1.3 1 0 0 1 1 1 0 Transcription factor MotA, activation domain FUR PF01475.14 gi|336255628|ref|YP_004598735.1| - 0.021 14.7 0.0 0.028 14.3 0.0 1.3 1 0 0 1 1 1 0 Ferric uptake regulator family TrmB PF01978.14 gi|336255628|ref|YP_004598735.1| - 0.051 13.2 0.0 0.099 12.3 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HxlR PF01638.12 gi|336255628|ref|YP_004598735.1| - 0.09 12.4 0.0 0.13 11.9 0.0 1.2 1 0 0 1 1 1 0 HxlR-like helix-turn-helix ECIST_Cterm PF14784.1 gi|336255630|ref|YP_004598737.1| - 0.13 12.2 0.0 0.14 12.0 0.0 1.1 1 0 0 1 1 1 0 C-terminal domain of the ECSIT protein AAA_22 PF13401.1 gi|336255631|ref|YP_004598738.1| - 8.7e-12 45.3 0.1 6.9e-11 42.4 0.0 2.2 1 1 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|336255631|ref|YP_004598738.1| - 1.3e-10 41.5 3.2 2.2e-09 37.5 2.2 2.8 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.24 gi|336255631|ref|YP_004598738.1| - 4.6e-07 30.1 0.2 3.2e-06 27.3 0.2 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|336255631|ref|YP_004598738.1| - 9.2e-07 29.7 0.4 2.5e-06 28.2 0.2 2.0 1 1 0 1 1 1 1 AAA domain Bac_DnaA PF00308.13 gi|336255631|ref|YP_004598738.1| - 1.6e-05 24.6 0.1 0.00012 21.7 0.0 2.1 1 1 0 1 1 1 1 Bacterial dnaA protein Sigma54_activat PF00158.21 gi|336255631|ref|YP_004598738.1| - 4e-05 23.1 0.0 7.3e-05 22.2 0.0 1.5 1 0 0 1 1 1 1 Sigma-54 interaction domain Arch_ATPase PF01637.13 gi|336255631|ref|YP_004598738.1| - 0.00011 22.0 0.6 0.0044 16.7 0.4 2.3 1 1 0 1 1 1 1 Archaeal ATPase DUF815 PF05673.8 gi|336255631|ref|YP_004598738.1| - 0.00012 21.1 0.0 0.00054 18.9 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF815) AAA_5 PF07728.9 gi|336255631|ref|YP_004598738.1| - 0.00013 21.7 0.1 0.00039 20.1 0.0 1.9 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_33 PF13671.1 gi|336255631|ref|YP_004598738.1| - 0.00015 21.6 1.6 0.0026 17.6 1.1 2.8 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|336255631|ref|YP_004598738.1| - 0.00021 21.2 0.0 0.00042 20.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|336255631|ref|YP_004598738.1| - 0.00031 20.4 0.0 0.00051 19.7 0.0 1.5 1 0 0 1 1 1 1 NACHT domain ABC_tran PF00005.22 gi|336255631|ref|YP_004598738.1| - 0.00046 20.5 0.0 0.001 19.3 0.0 1.9 1 1 0 1 1 1 1 ABC transporter AAA_18 PF13238.1 gi|336255631|ref|YP_004598738.1| - 0.00055 20.2 0.8 0.0016 18.7 0.1 2.2 2 1 0 2 2 1 1 AAA domain IstB_IS21 PF01695.12 gi|336255631|ref|YP_004598738.1| - 0.0011 18.4 0.0 0.0028 17.1 0.0 1.7 1 0 0 1 1 1 1 IstB-like ATP binding protein PEPCK_ATP PF01293.15 gi|336255631|ref|YP_004598738.1| - 0.0011 17.5 0.0 0.0017 16.9 0.0 1.2 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxykinase AAA_10 PF12846.2 gi|336255631|ref|YP_004598738.1| - 0.0012 18.3 1.0 0.0068 15.8 0.7 2.3 1 1 0 1 1 1 1 AAA-like domain AAA_24 PF13479.1 gi|336255631|ref|YP_004598738.1| - 0.0015 18.1 0.1 0.0037 16.8 0.0 1.6 2 0 0 2 2 2 1 AAA domain RuvB_N PF05496.7 gi|336255631|ref|YP_004598738.1| - 0.0018 17.3 0.2 0.038 13.0 0.0 2.3 2 1 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus MobB PF03205.9 gi|336255631|ref|YP_004598738.1| - 0.0027 17.3 0.0 0.0067 16.1 0.0 1.7 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B TIP49 PF06068.8 gi|336255631|ref|YP_004598738.1| - 0.0039 15.9 0.0 0.011 14.5 0.0 1.8 1 1 0 1 1 1 1 TIP49 C-terminus NTPase_1 PF03266.10 gi|336255631|ref|YP_004598738.1| - 0.0045 16.7 0.1 0.064 12.9 0.0 2.2 2 0 0 2 2 2 1 NTPase RNA_helicase PF00910.17 gi|336255631|ref|YP_004598738.1| - 0.0046 17.1 0.0 0.008 16.3 0.0 1.5 1 0 0 1 1 1 1 RNA helicase DUF2075 PF09848.4 gi|336255631|ref|YP_004598738.1| - 0.0055 15.7 0.0 0.0074 15.2 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_19 PF13245.1 gi|336255631|ref|YP_004598738.1| - 0.0065 16.2 0.1 0.025 14.3 0.1 2.2 1 1 0 1 1 1 1 Part of AAA domain NB-ARC PF00931.17 gi|336255631|ref|YP_004598738.1| - 0.0073 15.2 0.0 0.01 14.7 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain AAA_29 PF13555.1 gi|336255631|ref|YP_004598738.1| - 0.012 15.1 0.1 0.024 14.1 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain UPF0079 PF02367.12 gi|336255631|ref|YP_004598738.1| - 0.015 14.9 0.1 0.58 9.7 0.0 2.5 2 1 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 AAA_25 PF13481.1 gi|336255631|ref|YP_004598738.1| - 0.015 14.6 0.1 0.065 12.6 0.0 2.1 2 0 0 2 2 2 0 AAA domain T2SE PF00437.15 gi|336255631|ref|YP_004598738.1| - 0.018 13.9 0.1 0.054 12.3 0.0 1.8 2 0 0 2 2 2 0 Type II/IV secretion system protein Mannitol_dh PF01232.18 gi|336255631|ref|YP_004598738.1| - 0.021 14.7 0.0 0.043 13.7 0.0 1.5 1 0 0 1 1 1 0 Mannitol dehydrogenase Rossmann domain AAA_28 PF13521.1 gi|336255631|ref|YP_004598738.1| - 0.041 13.8 0.0 0.096 12.6 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|336255631|ref|YP_004598738.1| - 0.042 14.1 0.1 0.11 12.8 0.1 1.6 1 0 0 1 1 1 0 AAA domain KaiC PF06745.8 gi|336255631|ref|YP_004598738.1| - 0.043 12.9 0.2 0.11 11.5 0.1 1.8 1 1 0 1 1 1 0 KaiC ATP-synt_ab PF00006.20 gi|336255631|ref|YP_004598738.1| - 0.054 12.9 0.0 0.12 11.8 0.0 1.6 2 0 0 2 2 1 0 ATP synthase alpha/beta family, nucleotide-binding domain Sigma54_activ_2 PF14532.1 gi|336255631|ref|YP_004598738.1| - 0.055 13.5 0.0 0.12 12.4 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain DUF258 PF03193.11 gi|336255631|ref|YP_004598738.1| - 0.064 12.4 0.0 0.097 11.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Mg_chelatase PF01078.16 gi|336255631|ref|YP_004598738.1| - 0.079 12.1 0.0 0.15 11.2 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_13 PF13166.1 gi|336255631|ref|YP_004598738.1| - 0.093 11.1 0.0 0.15 10.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|336255631|ref|YP_004598738.1| - 0.096 12.1 0.1 0.45 9.9 0.0 2.1 2 0 0 2 2 2 0 FtsK/SpoIIIE family DEAD PF00270.24 gi|336255631|ref|YP_004598738.1| - 0.097 12.1 0.2 2.2 7.7 0.0 2.2 1 1 0 2 2 2 0 DEAD/DEAH box helicase KAP_NTPase PF07693.9 gi|336255631|ref|YP_004598738.1| - 0.18 10.7 1.2 0.93 8.4 0.7 2.0 1 1 1 2 2 2 0 KAP family P-loop domain Vps36_ESCRT-II PF11605.3 gi|336255633|ref|YP_004598740.1| - 4.5e-05 23.1 0.0 7e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 Vacuolar protein sorting protein 36 Vps36 DUF4282 PF14110.1 gi|336255633|ref|YP_004598740.1| - 0.15 12.3 1.4 0.22 11.7 1.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4282) DUF3040 PF11239.3 gi|336255633|ref|YP_004598740.1| - 0.43 10.6 1.9 0.85 9.7 1.3 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3040) DUF1003 PF06210.6 gi|336255636|ref|YP_004598743.1| - 0.54 10.2 3.4 0.99 9.3 2.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1003) Glucos_trans_II PF14264.1 gi|336255637|ref|YP_004598744.1| - 0.12 11.3 0.0 0.21 10.5 0.0 1.3 1 0 0 1 1 1 0 Glucosyl transferase GtrII PAP2 PF01569.16 gi|336255640|ref|YP_004598747.1| - 1.6e-17 63.3 6.5 2.5e-17 62.7 4.5 1.3 1 0 0 1 1 1 1 PAP2 superfamily PAP2_3 PF14378.1 gi|336255640|ref|YP_004598747.1| - 0.00071 19.1 5.1 0.0012 18.3 3.5 1.3 1 0 0 1 1 1 1 PAP2 superfamily PAP2_C PF14360.1 gi|336255640|ref|YP_004598747.1| - 0.066 13.4 1.1 0.066 13.4 0.7 1.7 2 0 0 2 2 2 0 PAP2 superfamily C-terminal 2TM PF13239.1 gi|336255640|ref|YP_004598747.1| - 0.096 12.7 0.0 0.88 9.6 0.0 2.0 2 0 0 2 2 2 0 2TM domain DUF4267 PF14087.1 gi|336255640|ref|YP_004598747.1| - 0.38 10.3 7.2 0.14 11.7 2.5 2.2 2 1 1 3 3 3 0 Domain of unknown function (DUF4267) Sigma54_activ_2 PF14532.1 gi|336255641|ref|YP_004598748.1| - 0.0029 17.6 0.0 0.009 16.0 0.0 1.7 2 0 0 2 2 2 1 Sigma-54 interaction domain HTH_28 PF13518.1 gi|336255641|ref|YP_004598748.1| - 0.0089 16.0 0.0 0.021 14.7 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.1 gi|336255641|ref|YP_004598748.1| - 0.094 12.2 0.0 0.25 10.9 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain UPF0079 PF02367.12 gi|336255641|ref|YP_004598748.1| - 0.16 11.6 0.2 0.44 10.1 0.0 1.7 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 N6_N4_Mtase PF01555.13 gi|336255643|ref|YP_004598750.1| - 5.7e-47 160.1 5.6 7.6e-45 153.1 3.9 2.4 1 1 0 1 1 1 1 DNA methylase Methyltransf_26 PF13659.1 gi|336255643|ref|YP_004598750.1| - 1.8e-08 34.4 0.0 6.3e-05 22.9 0.0 2.4 2 0 0 2 2 2 2 Methyltransferase domain Mrr_cat PF04471.7 gi|336255643|ref|YP_004598750.1| - 1.8e-07 30.9 0.0 5.8e-07 29.3 0.0 1.9 2 0 0 2 2 2 1 Restriction endonuclease Methyltransf_31 PF13847.1 gi|336255643|ref|YP_004598750.1| - 0.00072 19.1 0.0 0.01 15.4 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase domain MethyltransfD12 PF02086.10 gi|336255643|ref|YP_004598750.1| - 0.0017 17.8 1.2 0.15 11.4 0.1 2.9 3 1 1 4 4 4 1 D12 class N6 adenine-specific DNA methyltransferase Cons_hypoth95 PF03602.10 gi|336255643|ref|YP_004598750.1| - 0.009 15.4 0.0 0.031 13.6 0.0 1.8 2 0 0 2 2 2 1 Conserved hypothetical protein 95 Methyltransf_11 PF08241.7 gi|336255643|ref|YP_004598750.1| - 0.0095 16.4 0.0 4.7 7.7 0.0 2.9 3 0 0 3 3 3 1 Methyltransferase domain UPF0020 PF01170.13 gi|336255643|ref|YP_004598750.1| - 0.018 14.5 0.0 0.041 13.4 0.0 1.5 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 Methyltransf_15 PF09445.5 gi|336255643|ref|YP_004598750.1| - 0.11 12.0 0.0 0.5 9.9 0.0 1.9 2 0 0 2 2 2 0 RNA cap guanine-N2 methyltransferase HTH_17 PF12728.2 gi|336255646|ref|YP_004598753.1| - 0.00015 21.9 0.2 0.0045 17.2 0.0 3.3 4 0 0 4 4 4 1 Helix-turn-helix domain HTH_38 PF13936.1 gi|336255646|ref|YP_004598753.1| - 0.00017 21.0 0.0 0.00041 19.8 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|336255646|ref|YP_004598753.1| - 0.0099 15.5 0.0 0.032 13.9 0.0 1.8 1 0 0 1 1 1 1 Homeodomain-like domain HTH_IclR PF09339.5 gi|336255646|ref|YP_004598753.1| - 0.057 13.0 0.0 0.14 11.7 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_28 PF13518.1 gi|336255646|ref|YP_004598753.1| - 0.06 13.3 0.1 0.37 10.8 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_11 PF08279.7 gi|336255646|ref|YP_004598753.1| - 0.065 12.8 0.0 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 HTH domain TrmB PF01978.14 gi|336255646|ref|YP_004598753.1| - 0.15 11.7 0.0 0.32 10.7 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF488 PF04343.8 gi|336255648|ref|YP_004598755.1| - 2.9e-07 30.8 0.7 5.6e-07 29.9 0.5 1.5 1 1 0 1 1 1 1 Protein of unknown function, DUF488 MethyltransfD12 PF02086.10 gi|336255649|ref|YP_004598756.1| - 6.3e-20 71.7 0.0 8.4e-20 71.3 0.0 1.2 1 0 0 1 1 1 1 D12 class N6 adenine-specific DNA methyltransferase Cons_hypoth95 PF03602.10 gi|336255649|ref|YP_004598756.1| - 0.14 11.5 0.0 0.3 10.4 0.0 1.5 2 0 0 2 2 2 0 Conserved hypothetical protein 95 DUF3268 PF11672.3 gi|336255651|ref|YP_004598758.1| - 0.0035 17.3 0.2 0.0041 17.1 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3268) DZR PF12773.2 gi|336255651|ref|YP_004598758.1| - 0.0038 17.0 0.4 0.0054 16.5 0.3 1.2 1 0 0 1 1 1 1 Double zinc ribbon OrfB_Zn_ribbon PF07282.6 gi|336255651|ref|YP_004598758.1| - 0.013 15.1 0.9 0.024 14.2 0.5 1.5 2 0 0 2 2 2 0 Putative transposase DNA-binding domain C1_1 PF00130.17 gi|336255651|ref|YP_004598758.1| - 0.019 14.6 0.3 0.028 14.1 0.2 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Zn_Tnp_IS1595 PF12760.2 gi|336255651|ref|YP_004598758.1| - 0.023 14.5 1.5 0.031 14.0 1.1 1.2 1 0 0 1 1 1 0 Transposase zinc-ribbon domain DNA_RNApol_7kD PF03604.8 gi|336255651|ref|YP_004598758.1| - 0.028 13.9 0.5 2.2 7.8 0.0 2.2 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_2 PF13240.1 gi|336255651|ref|YP_004598758.1| - 0.035 13.5 2.7 0.16 11.5 1.8 1.9 1 1 0 1 1 1 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|336255651|ref|YP_004598758.1| - 0.055 12.6 0.2 0.57 9.4 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbon domain Fer4_2 PF12797.2 gi|336255651|ref|YP_004598758.1| - 0.1 12.5 0.9 0.47 10.4 0.1 2.1 2 0 0 2 2 2 0 4Fe-4S binding domain FdhE PF04216.7 gi|336255651|ref|YP_004598758.1| - 0.12 12.0 0.1 0.13 11.9 0.0 1.0 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation zf-Sec23_Sec24 PF04810.10 gi|336255651|ref|YP_004598758.1| - 0.16 11.5 2.4 7.5 6.2 0.0 2.2 2 0 0 2 2 2 0 Sec23/Sec24 zinc finger Zn-ribbon_8 PF09723.5 gi|336255651|ref|YP_004598758.1| - 0.37 10.7 4.1 5 7.1 0.3 2.2 1 1 2 3 3 3 0 Zinc ribbon domain RNHCP PF12647.2 gi|336255651|ref|YP_004598758.1| - 0.4 10.5 2.6 7.3 6.4 0.1 2.1 1 1 1 2 2 2 0 RNHCP domain Nudix_N_2 PF14803.1 gi|336255651|ref|YP_004598758.1| - 0.93 9.2 7.0 0.22 11.2 2.5 1.7 2 0 0 2 2 2 0 Nudix N-terminal zf-RING_3 PF14369.1 gi|336255651|ref|YP_004598758.1| - 3.2 7.8 5.7 3 7.9 0.4 2.2 1 1 1 2 2 2 0 zinc-finger AF-4 PF05110.8 gi|336255652|ref|YP_004598759.1| - 2.1 6.1 12.0 2.6 5.8 8.3 1.0 1 0 0 1 1 1 0 AF-4 proto-oncoprotein HTH_10 PF04967.7 gi|336255654|ref|YP_004598761.1| - 2.1e-19 68.8 0.0 4.6e-19 67.7 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain PAS_9 PF13426.1 gi|336255654|ref|YP_004598761.1| - 2.4e-12 47.1 0.0 6.6e-12 45.7 0.0 1.8 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.5 gi|336255654|ref|YP_004598761.1| - 1.3e-10 41.3 0.1 3.7e-10 39.8 0.1 1.9 1 0 0 1 1 1 1 PAS fold PAS PF00989.19 gi|336255654|ref|YP_004598761.1| - 7e-09 35.4 0.0 2.1e-08 33.9 0.0 1.8 1 1 0 1 1 1 1 PAS fold MarR_2 PF12802.2 gi|336255654|ref|YP_004598761.1| - 0.0015 18.1 0.2 0.042 13.5 0.0 2.5 2 0 0 2 2 2 1 MarR family PAS_8 PF13188.1 gi|336255654|ref|YP_004598761.1| - 0.0019 17.9 0.0 0.006 16.4 0.0 1.9 1 0 0 1 1 1 1 PAS domain UPF0122 PF04297.9 gi|336255654|ref|YP_004598761.1| - 0.008 16.1 0.0 0.016 15.1 0.0 1.5 1 0 0 1 1 1 1 Putative helix-turn-helix protein, YlxM / p13 like HTH_11 PF08279.7 gi|336255654|ref|YP_004598761.1| - 0.013 15.1 0.0 0.035 13.7 0.0 1.6 1 0 0 1 1 1 0 HTH domain HTH_20 PF12840.2 gi|336255654|ref|YP_004598761.1| - 0.019 14.7 0.4 0.18 11.6 0.0 2.8 4 0 0 4 4 4 0 Helix-turn-helix domain HTH_24 PF13412.1 gi|336255654|ref|YP_004598761.1| - 0.053 12.9 0.0 0.14 11.5 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding FmdA_AmdA PF03069.10 gi|336255655|ref|YP_004598762.1| - 5.4e-60 203.0 0.0 6.9e-31 107.2 0.0 2.4 1 1 1 2 2 2 2 Acetamidase/Formamidase family IMPDH PF00478.20 gi|336255656|ref|YP_004598763.1| - 1e-129 432.4 4.3 1.1e-129 432.3 2.9 1.0 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain CBS PF00571.23 gi|336255656|ref|YP_004598763.1| - 8.5e-26 89.4 5.7 1.3e-13 50.5 0.3 3.1 3 0 0 3 3 3 2 CBS domain NMO PF03060.10 gi|336255656|ref|YP_004598763.1| - 5e-15 55.4 2.2 1.7e-07 30.7 0.3 2.3 2 0 0 2 2 2 2 Nitronate monooxygenase FMN_dh PF01070.13 gi|336255656|ref|YP_004598763.1| - 1.1e-09 37.6 3.0 2.1e-09 36.7 2.1 1.4 1 0 0 1 1 1 1 FMN-dependent dehydrogenase Glu_synthase PF01645.12 gi|336255656|ref|YP_004598763.1| - 3.5e-05 22.9 5.5 0.00013 20.9 3.2 2.0 2 0 0 2 2 2 1 Conserved region in glutamate synthase ThiG PF05690.9 gi|336255656|ref|YP_004598763.1| - 9e-05 21.6 1.7 9e-05 21.6 1.2 2.2 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG DHO_dh PF01180.16 gi|336255656|ref|YP_004598763.1| - 0.00017 20.6 1.5 0.0003 19.8 1.0 1.4 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase His_biosynth PF00977.16 gi|336255656|ref|YP_004598763.1| - 0.00034 19.9 2.7 0.00076 18.8 1.9 1.5 1 1 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.12 gi|336255656|ref|YP_004598763.1| - 0.0016 17.3 0.1 0.0033 16.2 0.1 1.5 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) PcrB PF01884.12 gi|336255656|ref|YP_004598763.1| - 0.033 13.4 0.6 0.033 13.4 0.4 2.3 2 0 0 2 2 2 0 PcrB family Cytidylate_kin2 PF13189.1 gi|336255658|ref|YP_004598765.1| - 1.2e-21 77.3 0.1 8.2e-21 74.7 0.1 1.9 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.1 gi|336255658|ref|YP_004598765.1| - 2.4e-18 66.6 0.0 3e-18 66.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|336255658|ref|YP_004598765.1| - 1.4e-13 51.7 0.5 3e-13 50.6 0.3 1.6 1 1 1 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|336255658|ref|YP_004598765.1| - 1.8e-06 27.8 0.0 6.4e-06 26.1 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|336255658|ref|YP_004598765.1| - 2.2e-06 27.7 0.1 4.8e-06 26.6 0.1 1.7 1 1 0 1 1 1 1 AAA domain ADK PF00406.17 gi|336255658|ref|YP_004598765.1| - 7.9e-06 25.8 0.1 3e-05 23.9 0.1 2.0 1 1 0 1 1 1 1 Adenylate kinase AAA PF00004.24 gi|336255658|ref|YP_004598765.1| - 7.1e-05 23.0 0.0 0.00013 22.1 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) CoaE PF01121.15 gi|336255658|ref|YP_004598765.1| - 0.0012 18.3 0.0 0.16 11.3 0.0 2.1 2 0 0 2 2 2 1 Dephospho-CoA kinase SKI PF01202.17 gi|336255658|ref|YP_004598765.1| - 0.0025 17.7 0.2 0.02 14.7 0.1 2.0 1 1 0 1 1 1 1 Shikimate kinase AAA_19 PF13245.1 gi|336255658|ref|YP_004598765.1| - 0.0074 16.0 0.1 0.022 14.4 0.0 1.8 2 0 0 2 2 2 1 Part of AAA domain AAA_16 PF13191.1 gi|336255658|ref|YP_004598765.1| - 0.012 15.5 0.0 0.019 14.9 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain PRK PF00485.13 gi|336255658|ref|YP_004598765.1| - 0.026 14.0 0.0 0.32 10.5 0.0 2.1 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family AAA_22 PF13401.1 gi|336255658|ref|YP_004598765.1| - 0.033 14.3 0.0 0.061 13.4 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|336255658|ref|YP_004598765.1| - 0.037 13.7 0.0 0.098 12.3 0.0 1.7 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) RHH_1 PF01402.16 gi|336255658|ref|YP_004598765.1| - 0.095 12.6 0.9 20 5.2 0.0 3.2 3 0 0 3 3 3 0 Ribbon-helix-helix protein, copG family NACHT PF05729.7 gi|336255658|ref|YP_004598765.1| - 0.11 12.1 0.0 0.25 10.9 0.0 1.6 1 1 1 2 2 2 0 NACHT domain RNA_helicase PF00910.17 gi|336255658|ref|YP_004598765.1| - 0.12 12.5 0.0 0.19 11.9 0.0 1.3 1 0 0 1 1 1 0 RNA helicase TAT_signal PF10518.4 gi|336255659|ref|YP_004598766.1| - 0.03 14.3 0.5 0.047 13.7 0.4 1.3 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Actino_peptide PF14408.1 gi|336255659|ref|YP_004598766.1| - 0.2 11.6 4.3 0.21 11.5 2.0 1.7 1 1 1 2 2 2 0 Ribosomally synthesized peptide in actinomycetes YcaO PF02624.11 gi|336255660|ref|YP_004598767.1| - 1.7e-58 198.6 9.8 2.3e-58 198.2 6.8 1.2 1 0 0 1 1 1 1 YcaO-like family Na_Ca_ex PF01699.19 gi|336255661|ref|YP_004598768.1| - 9.6e-49 164.5 26.6 2.8e-27 95.0 5.8 2.1 2 0 0 2 2 2 2 Sodium/calcium exchanger protein DUF4260 PF14079.1 gi|336255661|ref|YP_004598768.1| - 0.13 12.0 6.8 0.11 12.3 0.9 2.6 3 0 0 3 3 3 0 Domain of unknown function (DUF4260) Band_7 PF01145.20 gi|336255662|ref|YP_004598769.1| - 2.1e-36 125.5 2.0 2.1e-36 125.5 1.4 2.0 2 1 0 3 3 3 1 SPFH domain / Band 7 family Band_7_1 PF13421.1 gi|336255662|ref|YP_004598769.1| - 0.0011 18.5 0.0 0.002 17.6 0.0 1.4 1 0 0 1 1 1 1 SPFH domain-Band 7 family YkyA PF10368.4 gi|336255662|ref|YP_004598769.1| - 2.1 7.6 6.5 0.21 10.9 0.9 1.8 2 0 0 2 2 2 0 Putative cell-wall binding lipoprotein Na_H_Exchanger PF00999.16 gi|336255663|ref|YP_004598770.1| - 1e-64 218.4 50.9 1.3e-64 218.1 35.2 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family DUF2613 PF11021.3 gi|336255663|ref|YP_004598770.1| - 0.41 10.3 3.9 20 4.9 0.0 2.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2613) MatE PF01554.13 gi|336255664|ref|YP_004598771.1| - 9.8e-62 207.3 31.2 3.5e-35 121.0 10.3 2.5 2 0 0 2 2 2 2 MatE Polysacc_synt_C PF14667.1 gi|336255664|ref|YP_004598771.1| - 4.4e-09 36.2 20.7 1.4e-08 34.6 9.6 3.9 4 2 0 4 4 4 2 Polysaccharide biosynthesis C-terminal domain Iron_permease PF04120.7 gi|336255664|ref|YP_004598771.1| - 0.68 9.5 2.8 0.47 10.0 0.1 2.1 2 0 0 2 2 2 0 Low affinity iron permease TetR_C_6 PF13977.1 gi|336255665|ref|YP_004598772.1| - 5e-17 61.9 4.3 5e-17 61.9 3.0 2.0 3 0 0 3 3 3 1 Bacterial transcriptional repressor TetR_N PF00440.18 gi|336255665|ref|YP_004598772.1| - 1.5e-13 50.1 0.1 2.5e-13 49.4 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family Gluconate_2-dh3 PF13618.1 gi|336255665|ref|YP_004598772.1| - 0.00049 20.2 2.2 0.019 15.1 0.2 2.4 2 0 0 2 2 2 1 Gluconate 2-dehydrogenase subunit 3 TetR_C_4 PF08359.6 gi|336255665|ref|YP_004598772.1| - 0.022 14.7 0.0 0.035 14.0 0.0 1.3 1 0 0 1 1 1 0 YsiA-like protein, C-terminal region DUF1488 PF07369.6 gi|336255665|ref|YP_004598772.1| - 1.1 9.1 4.2 1.9 8.4 0.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1488) RNA_binding PF01877.12 gi|336255666|ref|YP_004598773.1| - 8.4e-30 103.2 0.2 2.2e-29 101.8 0.0 1.6 2 0 0 2 2 2 1 RNA binding Ribosomal_L17 PF01196.14 gi|336255666|ref|YP_004598773.1| - 0.028 15.0 0.0 0.073 13.6 0.0 1.7 2 0 0 2 2 2 0 Ribosomal protein L17 DUF3590 PF12148.3 gi|336255667|ref|YP_004598774.1| - 0.11 12.1 0.1 0.14 11.8 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3590) NTP_transf_2 PF01909.18 gi|336255668|ref|YP_004598775.1| - 3.2e-10 40.1 0.1 5.2e-10 39.5 0.1 1.4 1 0 0 1 1 1 1 Nucleotidyltransferase domain DUF294 PF03445.8 gi|336255668|ref|YP_004598775.1| - 0.043 13.4 0.1 0.13 11.8 0.0 1.8 1 1 1 2 2 2 0 Putative nucleotidyltransferase DUF294 MarR_2 PF12802.2 gi|336255668|ref|YP_004598775.1| - 0.051 13.2 0.1 8.5 6.1 0.0 2.4 2 0 0 2 2 2 0 MarR family DNA_pol_B_palm PF14792.1 gi|336255668|ref|YP_004598775.1| - 0.059 13.4 0.0 0.095 12.7 0.0 1.3 1 0 0 1 1 1 0 DNA polymerase beta palm FtsJ PF01728.14 gi|336255669|ref|YP_004598776.1| - 0.1 12.5 0.0 0.75 9.7 0.0 1.9 1 1 0 2 2 2 0 FtsJ-like methyltransferase CTP_transf_2 PF01467.21 gi|336255670|ref|YP_004598777.1| - 6.8e-14 52.2 0.1 3.5e-13 49.9 0.0 1.8 1 1 0 1 1 1 1 Cytidylyltransferase FAD_syn PF06574.7 gi|336255670|ref|YP_004598777.1| - 0.002 17.7 0.1 0.025 14.1 0.1 2.1 2 0 0 2 2 2 1 FAD synthetase PTA_PTB PF01515.14 gi|336255671|ref|YP_004598778.1| - 3.8e-93 312.0 0.0 5.1e-93 311.6 0.0 1.2 1 0 0 1 1 1 1 Phosphate acetyl/butaryl transferase Malic_M PF03949.10 gi|336255671|ref|YP_004598778.1| - 2.3e-69 233.7 1.0 2.7e-69 233.5 0.0 1.6 2 0 0 2 2 2 1 Malic enzyme, NAD binding domain malic PF00390.14 gi|336255671|ref|YP_004598778.1| - 2.5e-30 105.4 0.1 5.6e-28 97.7 0.0 2.4 1 1 0 1 1 1 1 Malic enzyme, N-terminal domain PQQ_2 PF13360.1 gi|336255672|ref|YP_004598779.1| - 1.4e-39 136.0 8.9 3.9e-13 49.4 0.1 3.9 1 1 3 4 4 4 4 PQQ-like domain PQQ_3 PF13570.1 gi|336255672|ref|YP_004598779.1| - 2.2e-39 132.6 24.2 1e-08 35.1 0.2 8.9 8 1 0 8 8 8 6 PQQ-like domain PQQ PF01011.16 gi|336255672|ref|YP_004598779.1| - 4.1e-32 108.1 17.1 4.5e-08 32.2 0.1 7.3 8 0 0 8 8 8 5 PQQ enzyme repeat Neisseria_PilC PF05567.6 gi|336255672|ref|YP_004598779.1| - 0.028 13.4 0.7 2.7 6.9 0.0 2.3 2 0 0 2 2 2 0 Neisseria PilC beta-propeller domain Ribosomal_S8e PF01201.17 gi|336255673|ref|YP_004598780.1| - 1.1e-34 119.4 4.3 1.2e-34 119.3 3.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e PhoU PF01895.14 gi|336255674|ref|YP_004598781.1| - 4.1e-20 72.0 6.3 4.1e-14 52.7 0.5 2.4 2 0 0 2 2 2 2 PhoU domain Antitoxin-MazE PF04014.13 gi|336255674|ref|YP_004598781.1| - 2.9e-11 42.8 0.0 1e-10 41.0 0.0 2.0 2 0 0 2 2 2 1 Antidote-toxin recognition MazE NIR_SIR_ferr PF03460.12 gi|336255674|ref|YP_004598781.1| - 0.052 13.1 0.4 0.21 11.2 0.0 2.1 2 0 0 2 2 2 0 Nitrite/Sulfite reductase ferredoxin-like half domain PBP_like_2 PF12849.2 gi|336255675|ref|YP_004598782.1| - 1.5e-34 119.7 1.2 2.4e-34 119.1 0.8 1.3 1 1 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.2 gi|336255675|ref|YP_004598782.1| - 6.8e-13 47.9 0.0 1.2e-12 47.2 0.0 1.4 1 0 0 1 1 1 1 PBP superfamily domain TAT_signal PF10518.4 gi|336255675|ref|YP_004598782.1| - 0.0053 16.6 2.5 0.011 15.7 1.7 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Mab-21 PF03281.9 gi|336255675|ref|YP_004598782.1| - 0.058 12.5 0.0 0.084 11.9 0.0 1.2 1 0 0 1 1 1 0 Mab-21 protein BPD_transp_1 PF00528.17 gi|336255676|ref|YP_004598783.1| - 4e-17 62.3 13.6 4e-17 62.3 9.4 2.2 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|336255677|ref|YP_004598784.1| - 1.8e-17 63.4 16.3 1.8e-17 63.4 11.3 4.6 1 1 2 3 3 3 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|336255678|ref|YP_004598785.1| - 2.6e-29 102.2 0.0 4.5e-29 101.5 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|336255678|ref|YP_004598785.1| - 1.1e-14 55.0 0.0 5.8e-13 49.4 0.0 2.2 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|336255678|ref|YP_004598785.1| - 2e-09 37.0 0.0 5.8e-05 22.4 0.0 2.2 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|336255678|ref|YP_004598785.1| - 1.5e-06 27.5 0.0 0.006 15.6 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.1 gi|336255678|ref|YP_004598785.1| - 5.1e-05 23.4 0.0 0.00012 22.2 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|336255678|ref|YP_004598785.1| - 0.0002 21.7 0.0 0.00045 20.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|336255678|ref|YP_004598785.1| - 0.00047 19.6 0.0 0.0012 18.2 0.0 1.6 2 0 0 2 2 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|336255678|ref|YP_004598785.1| - 0.0011 19.0 0.7 0.014 15.4 0.5 2.1 1 1 0 1 1 1 1 AAA ATPase domain DUF258 PF03193.11 gi|336255678|ref|YP_004598785.1| - 0.0012 18.0 0.0 0.0021 17.2 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_13 PF13166.1 gi|336255678|ref|YP_004598785.1| - 0.0081 14.6 0.0 0.3 9.5 0.0 2.0 2 0 0 2 2 2 1 AAA domain Adeno_IVa2 PF02456.10 gi|336255678|ref|YP_004598785.1| - 0.012 14.3 0.0 0.13 10.8 0.0 2.0 2 0 0 2 2 2 0 Adenovirus IVa2 protein AAA_10 PF12846.2 gi|336255678|ref|YP_004598785.1| - 0.012 15.0 0.1 0.039 13.4 0.0 1.8 1 1 1 2 2 2 0 AAA-like domain DeoRC PF00455.17 gi|336255678|ref|YP_004598785.1| - 0.015 14.9 0.0 0.025 14.2 0.0 1.3 1 0 0 1 1 1 0 DeoR C terminal sensor domain AAA_25 PF13481.1 gi|336255678|ref|YP_004598785.1| - 0.017 14.5 0.0 0.07 12.5 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|336255678|ref|YP_004598785.1| - 0.018 14.8 0.0 1.7 8.4 0.0 2.3 2 0 0 2 2 2 0 Part of AAA domain AAA_17 PF13207.1 gi|336255678|ref|YP_004598785.1| - 0.019 15.7 1.0 0.057 14.2 0.7 2.2 1 1 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|336255678|ref|YP_004598785.1| - 0.021 14.5 0.0 0.24 11.0 0.0 2.0 2 0 0 2 2 2 0 Archaeal ATPase Rad17 PF03215.10 gi|336255678|ref|YP_004598785.1| - 0.03 13.0 0.0 0.043 12.5 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_33 PF13671.1 gi|336255678|ref|YP_004598785.1| - 0.052 13.4 0.0 0.12 12.2 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|336255678|ref|YP_004598785.1| - 0.12 12.2 0.0 0.39 10.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|336255678|ref|YP_004598785.1| - 0.13 11.9 0.0 0.23 11.0 0.0 1.4 1 0 0 1 1 1 0 NACHT domain HATPase_c PF02518.21 gi|336255679|ref|YP_004598786.1| - 8.9e-10 38.2 0.1 1.8e-09 37.2 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|336255679|ref|YP_004598786.1| - 5.9e-09 35.7 0.1 1.7e-08 34.2 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.1 gi|336255679|ref|YP_004598786.1| - 0.01 15.4 0.3 0.02 14.5 0.2 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|336255679|ref|YP_004598786.1| - 0.024 14.6 8.7 0.1 12.6 1.4 3.4 3 0 0 3 3 3 0 His Kinase A (phospho-acceptor) domain HAMP PF00672.20 gi|336255679|ref|YP_004598786.1| - 0.051 13.7 0.5 0.051 13.7 0.4 2.8 3 0 0 3 3 3 0 HAMP domain PhoU PF01895.14 gi|336255680|ref|YP_004598787.1| - 9.8e-37 125.2 14.3 7.4e-20 71.1 1.1 2.2 2 0 0 2 2 2 2 PhoU domain HTH_10 PF04967.7 gi|336255682|ref|YP_004598789.1| - 1.6e-15 56.4 0.1 2.7e-15 55.6 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain MarR_2 PF12802.2 gi|336255682|ref|YP_004598789.1| - 0.0036 16.9 0.1 0.0081 15.8 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|336255682|ref|YP_004598789.1| - 0.019 14.7 0.6 0.051 13.3 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_24 PF13412.1 gi|336255682|ref|YP_004598789.1| - 0.047 13.0 0.0 0.1 11.9 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MS_channel PF00924.13 gi|336255683|ref|YP_004598790.1| - 2.3e-47 160.9 0.5 4.4e-47 160.0 0.0 1.6 2 0 0 2 2 2 1 Mechanosensitive ion channel Bactofilin PF04519.8 gi|336255684|ref|YP_004598791.1| - 7.8e-12 45.0 3.6 6.3e-08 32.5 0.1 4.0 2 2 1 3 3 3 2 Polymer-forming cytoskeletal Hexapep PF00132.19 gi|336255684|ref|YP_004598791.1| - 8.4e-08 31.3 14.9 0.016 14.7 0.0 7.1 6 2 1 8 8 8 4 Bacterial transferase hexapeptide (six repeats) DUF3494 PF11999.3 gi|336255684|ref|YP_004598791.1| - 0.00044 19.9 0.0 0.091 12.3 0.0 3.1 3 1 0 3 3 3 1 Protein of unknown function (DUF3494) Hexapep_2 PF14602.1 gi|336255684|ref|YP_004598791.1| - 0.0058 16.1 13.9 0.036 13.6 0.4 4.9 5 1 0 5 5 5 2 Hexapeptide repeat of succinyl-transferase