# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- APC_u15 PF16636.5 gi|336252097|ref|YP_004595204.1| - 0.12 12.9 0.1 0.12 12.8 0.1 1.2 1 0 0 1 1 1 0 Unstructured region on APC between APC_crr regions 5 and 6 MCPsignal PF00015.21 gi|336252098|ref|YP_004595205.1| - 1.6e-37 129.0 22.7 1.6e-37 129.0 22.7 4.6 1 1 1 4 4 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF948 PF06103.11 gi|336252098|ref|YP_004595205.1| - 0.00075 19.7 36.1 0.0037 17.5 2.8 5.2 4 1 1 5 5 5 2 Bacterial protein of unknown function (DUF948) AAA_13 PF13166.6 gi|336252098|ref|YP_004595205.1| - 0.002 16.9 7.7 0.002 16.9 7.7 2.6 1 1 1 2 2 2 2 AAA domain UPF0242 PF06785.11 gi|336252098|ref|YP_004595205.1| - 0.0061 16.7 0.1 0.0061 16.7 0.1 3.7 1 1 1 4 4 4 1 Uncharacterised protein family (UPF0242) N-terminus DUF1664 PF07889.12 gi|336252098|ref|YP_004595205.1| - 0.0063 16.6 24.6 0.26 11.3 2.1 4.7 2 2 2 4 4 4 3 Protein of unknown function (DUF1664) Phage_GP20 PF06810.11 gi|336252098|ref|YP_004595205.1| - 0.029 14.2 1.1 0.029 14.2 1.1 4.2 2 2 1 4 4 4 0 Phage minor structural protein GP20 HAMP PF00672.25 gi|336252098|ref|YP_004595205.1| - 0.043 14.2 1.5 0.043 14.2 1.5 4.6 5 1 1 6 6 4 0 HAMP domain COG2 PF06148.11 gi|336252098|ref|YP_004595205.1| - 0.077 13.1 0.3 0.077 13.1 0.3 5.1 2 2 3 6 6 6 0 COG (conserved oligomeric Golgi) complex component, COG2 Mce4_CUP1 PF11887.8 gi|336252098|ref|YP_004595205.1| - 0.11 11.9 19.1 0.33 10.4 2.7 3.1 2 1 1 3 3 3 0 Cholesterol uptake porter CUP1 of Mce4, putative Laminin_II PF06009.12 gi|336252098|ref|YP_004595205.1| - 0.23 11.5 35.6 0.1 12.6 0.8 5.1 3 2 2 5 5 5 0 Laminin Domain II ApoO PF09769.9 gi|336252098|ref|YP_004595205.1| - 0.33 10.9 0.1 0.33 10.9 0.1 3.5 3 2 1 4 4 3 0 Apolipoprotein O DUF1759 PF03564.15 gi|336252098|ref|YP_004595205.1| - 0.43 10.5 6.7 13 5.7 0.1 3.8 2 2 1 3 3 3 0 Protein of unknown function (DUF1759) BLOC1_2 PF10046.9 gi|336252098|ref|YP_004595205.1| - 0.59 10.5 25.1 9.4 6.6 2.2 5.1 3 2 1 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 FlaC_arch PF05377.11 gi|336252098|ref|YP_004595205.1| - 0.6 10.5 18.4 12 6.4 0.5 5.9 3 2 2 5 5 5 0 Flagella accessory protein C (FlaC) Allexi_40kDa PF05549.11 gi|336252098|ref|YP_004595205.1| - 0.97 8.9 12.9 0.44 10.0 1.5 2.7 2 2 0 2 2 2 0 Allexivirus 40kDa protein Fib_alpha PF08702.10 gi|336252098|ref|YP_004595205.1| - 1.8 8.7 14.4 2.3 8.4 2.5 3.9 2 2 2 4 4 4 0 Fibrinogen alpha/beta chain family DASH_Duo1 PF08651.10 gi|336252098|ref|YP_004595205.1| - 2.9 7.7 11.3 0.87 9.4 0.1 4.7 3 2 1 5 5 5 0 DASH complex subunit Duo1 Med9 PF07544.13 gi|336252098|ref|YP_004595205.1| - 3 8.0 8.4 4.2 7.5 0.1 4.5 3 1 1 4 4 4 0 RNA polymerase II transcription mediator complex subunit 9 BORCS8 PF10167.9 gi|336252098|ref|YP_004595205.1| - 3.7 7.5 10.5 0.27 11.2 0.3 3.7 4 1 1 5 5 5 0 BLOC-1-related complex sub-unit 8 DUF2452 PF10504.9 gi|336252098|ref|YP_004595205.1| - 3.9 6.9 8.9 2.6 7.5 0.5 3.3 2 1 0 3 3 3 0 Protein of unknown function (DUF2452) Prominin PF05478.11 gi|336252098|ref|YP_004595205.1| - 5.1 4.9 12.8 5 5.0 2.0 2.2 1 1 0 2 2 2 0 Prominin IFT20 PF14931.6 gi|336252098|ref|YP_004595205.1| - 7.7 6.7 25.4 0.33 11.1 3.9 4.4 3 1 0 4 4 4 0 Intraflagellar transport complex B, subunit 20 Polyketide_cyc2 PF10604.9 gi|336252101|ref|YP_004595208.1| - 1.5e-07 31.8 1.0 2.3e-07 31.2 1.0 1.3 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport DUF2892 PF11127.8 gi|336252101|ref|YP_004595208.1| - 2.1e-07 30.8 0.2 3.6e-07 30.1 0.2 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2892) Polyketide_cyc PF03364.20 gi|336252101|ref|YP_004595208.1| - 1.4e-05 25.3 0.0 2e-05 24.8 0.0 1.2 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Sacchrp_dh_NADP PF03435.18 gi|336252102|ref|YP_004595209.1| - 1.9e-09 37.9 0.0 2.8e-09 37.3 0.0 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain RecA_dep_nuc PF16786.5 gi|336252103|ref|YP_004595210.1| - 0.03 14.4 0.2 0.045 13.9 0.2 1.4 1 0 0 1 1 1 0 Recombination enhancement, RecA-dependent nuclease C1_1 PF00130.22 gi|336252103|ref|YP_004595210.1| - 0.033 14.1 2.8 0.038 13.9 0.3 2.1 2 0 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DUF2387 PF09526.10 gi|336252103|ref|YP_004595210.1| - 0.051 13.7 0.1 0.097 12.8 0.1 1.4 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) HNH PF01844.23 gi|336252103|ref|YP_004595210.1| - 0.059 13.5 3.9 0.11 12.8 3.9 1.4 1 0 0 1 1 1 0 HNH endonuclease MCPsignal PF00015.21 gi|336252104|ref|YP_004595211.1| - 6.8e-31 107.4 56.6 2.6e-30 105.5 24.2 4.2 1 1 2 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 gi|336252104|ref|YP_004595211.1| - 9e-12 45.2 11.5 1.4e-08 34.9 0.1 5.2 5 1 0 5 5 4 2 HAMP domain DUF1664 PF07889.12 gi|336252104|ref|YP_004595211.1| - 8.5e-05 22.6 31.7 0.011 15.7 1.8 5.3 4 1 1 5 5 5 2 Protein of unknown function (DUF1664) Laminin_II PF06009.12 gi|336252104|ref|YP_004595211.1| - 0.0011 19.0 38.0 0.021 14.8 1.5 5.1 2 2 3 5 5 5 3 Laminin Domain II DUF948 PF06103.11 gi|336252104|ref|YP_004595211.1| - 0.0037 17.5 40.0 0.014 15.7 0.9 7.3 1 1 3 4 4 3 1 Bacterial protein of unknown function (DUF948) HAUS-augmin3 PF14932.6 gi|336252104|ref|YP_004595211.1| - 0.0056 16.3 3.1 0.0056 16.3 3.1 4.1 1 1 3 4 4 4 1 HAUS augmin-like complex subunit 3 Fib_alpha PF08702.10 gi|336252104|ref|YP_004595211.1| - 0.021 15.0 22.8 0.68 10.1 1.0 4.6 2 1 2 5 5 5 0 Fibrinogen alpha/beta chain family Seryl_tRNA_N PF02403.22 gi|336252104|ref|YP_004595211.1| - 0.038 14.2 35.3 0.14 12.4 1.2 5.7 1 1 4 5 5 5 0 Seryl-tRNA synthetase N-terminal domain IFT57 PF10498.9 gi|336252104|ref|YP_004595211.1| - 0.047 12.7 25.8 0.026 13.5 5.1 4.1 2 1 0 3 3 3 0 Intra-flagellar transport protein 57 Baculo_PEP_C PF04513.12 gi|336252104|ref|YP_004595211.1| - 0.073 13.1 27.7 0.075 13.1 3.6 4.1 2 1 3 5 5 5 0 Baculovirus polyhedron envelope protein, PEP, C terminus Syntaxin_2 PF14523.6 gi|336252104|ref|YP_004595211.1| - 0.19 12.1 14.7 14 6.2 2.4 4.7 2 1 2 4 4 3 0 Syntaxin-like protein TSNAXIP1_N PF15739.5 gi|336252104|ref|YP_004595211.1| - 0.23 11.9 0.1 0.23 11.9 0.1 5.3 4 2 1 5 5 5 0 Translin-associated factor X-interacting N-terminus NPV_P10 PF05531.12 gi|336252104|ref|YP_004595211.1| - 0.23 12.0 31.6 0.22 12.0 1.0 6.0 3 2 3 6 6 6 0 Nucleopolyhedrovirus P10 protein Occludin_ELL PF07303.13 gi|336252104|ref|YP_004595211.1| - 0.82 10.4 13.1 4.1 8.2 0.0 5.2 4 2 2 6 6 6 0 Occludin homology domain DUF2935 PF11155.8 gi|336252104|ref|YP_004595211.1| - 1.2 9.5 8.0 0.91 9.9 0.1 3.7 3 2 1 4 4 4 0 Domain of unknown function (DUF2935) Vac_Fusion PF02346.16 gi|336252104|ref|YP_004595211.1| - 1.9 8.2 4.6 10 5.8 0.0 3.2 3 0 0 3 3 3 0 Chordopoxvirus multifunctional envelope protein A27 DUF730 PF05325.11 gi|336252104|ref|YP_004595211.1| - 2 8.4 7.5 4 7.5 0.4 3.5 4 1 1 5 5 3 0 Protein of unknown function (DUF730) Allexi_40kDa PF05549.11 gi|336252104|ref|YP_004595211.1| - 3 7.3 17.7 0.05 13.1 1.2 3.3 1 1 3 4 4 4 0 Allexivirus 40kDa protein DASH_Duo1 PF08651.10 gi|336252104|ref|YP_004595211.1| - 3.3 7.5 14.3 24 4.8 0.2 5.3 5 1 0 6 6 6 0 DASH complex subunit Duo1 Spc7 PF08317.11 gi|336252104|ref|YP_004595211.1| - 4.3 6.1 42.8 0.3 9.9 4.9 4.1 1 1 2 4 4 4 0 Spc7 kinetochore protein DCB PF16213.5 gi|336252104|ref|YP_004595211.1| - 4.6 6.9 6.8 47 3.6 0.2 3.2 3 0 0 3 3 3 0 Dimerisation and cyclophilin-binding domain of Mon2 FH2 PF02181.23 gi|336252104|ref|YP_004595211.1| - 4.8 6.2 12.6 1.2 8.1 1.3 2.9 2 1 0 2 2 2 0 Formin Homology 2 Domain DUF2730 PF10805.8 gi|336252104|ref|YP_004595211.1| - 4.9 7.3 10.0 20 5.3 0.0 5.0 5 1 1 6 6 6 0 Protein of unknown function (DUF2730) CorA PF01544.18 gi|336252104|ref|YP_004595211.1| - 5.7 6.2 24.5 1.4 8.2 4.8 3.6 2 1 1 3 3 3 0 CorA-like Mg2+ transporter protein DUF192 PF02643.15 gi|336252105|ref|YP_004595212.1| - 2.3e-21 75.7 0.0 2.6e-21 75.6 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 HMGL-like PF00682.19 gi|336252106|ref|YP_004595213.1| - 4.9e-67 226.3 3.1 1e-66 225.2 3.1 1.5 1 0 0 1 1 1 1 HMGL-like LeuA_dimer PF08502.10 gi|336252106|ref|YP_004595213.1| - 2.5e-30 105.1 3.0 5.8e-30 103.9 3.0 1.7 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain DUF998 PF06197.13 gi|336252107|ref|YP_004595214.1| - 0.0085 15.7 6.2 0.011 15.3 6.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF998) Ferredoxin_N PF16947.5 gi|336252108|ref|YP_004595215.1| - 4.7e-33 113.1 7.7 4.7e-33 113.1 7.7 2.5 2 0 0 2 2 2 1 N-terminal region of 4Fe-4S ferredoxin iron-sulfur binding Fer4_7 PF12838.7 gi|336252108|ref|YP_004595215.1| - 1.3e-14 54.5 19.4 1.4e-07 32.0 5.7 3.4 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_11 PF13247.6 gi|336252108|ref|YP_004595215.1| - 1.4e-11 44.4 4.2 1.4e-11 44.4 4.2 2.7 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|336252108|ref|YP_004595215.1| - 8.1e-09 35.5 23.4 5.8e-06 26.3 3.3 3.8 1 1 3 4 4 4 3 4Fe-4S dicluster domain Fer4 PF00037.27 gi|336252108|ref|YP_004595215.1| - 3.4e-08 33.0 30.3 0.0001 21.9 3.5 4.4 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_6 PF12837.7 gi|336252108|ref|YP_004595215.1| - 7.6e-08 32.1 30.7 0.0012 18.8 2.9 4.3 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_9 PF13187.6 gi|336252108|ref|YP_004595215.1| - 1.3e-06 28.4 25.0 0.0079 16.3 7.7 3.5 2 2 1 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|336252108|ref|YP_004595215.1| - 1.7e-06 27.8 31.6 0.00028 20.8 1.9 4.3 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|336252108|ref|YP_004595215.1| - 0.0015 19.3 38.9 0.39 11.7 0.2 4.3 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_17 PF13534.6 gi|336252108|ref|YP_004595215.1| - 0.0022 18.5 20.4 0.063 13.8 2.2 4.2 2 1 3 5 5 5 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|336252108|ref|YP_004595215.1| - 0.0037 17.7 25.0 0.039 14.4 5.5 4.1 2 2 2 4 4 4 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|336252108|ref|YP_004595215.1| - 0.017 16.1 5.2 0.017 16.1 5.2 4.4 2 2 2 4 4 3 0 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|336252108|ref|YP_004595215.1| - 0.046 13.8 24.7 2.3 8.4 1.5 3.7 3 1 1 4 4 4 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|336252108|ref|YP_004595215.1| - 0.049 14.4 12.4 0.25 12.1 0.5 4.1 4 0 0 4 4 3 0 4Fe-4S single cluster domain Fer4_4 PF12800.7 gi|336252108|ref|YP_004595215.1| - 0.05 14.1 26.6 0.1 13.1 3.0 4.3 4 0 0 4 4 4 0 4Fe-4S binding domain AAA_3 PF07726.11 gi|336252109|ref|YP_004595216.1| - 4.7e-67 223.8 0.3 1.3e-66 222.4 0.1 1.7 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|336252109|ref|YP_004595216.1| - 3.6e-20 71.6 0.6 6.9e-20 70.7 0.6 1.5 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|336252109|ref|YP_004595216.1| - 2.9e-15 56.5 0.0 2.3e-14 53.5 0.0 2.0 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|336252109|ref|YP_004595216.1| - 1.2e-06 29.0 0.0 3.4e-06 27.5 0.0 1.8 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|336252109|ref|YP_004595216.1| - 3.2e-05 23.7 0.0 0.0017 18.1 0.0 2.1 2 0 0 2 2 2 1 Sigma-54 interaction domain MCM PF00493.23 gi|336252109|ref|YP_004595216.1| - 0.0057 15.8 0.0 0.0089 15.2 0.0 1.3 1 0 0 1 1 1 1 MCM P-loop domain RuvB_N PF05496.12 gi|336252109|ref|YP_004595216.1| - 0.0057 16.4 0.0 0.09 12.5 0.0 2.2 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain Mg_chelatase PF01078.21 gi|336252109|ref|YP_004595216.1| - 0.009 15.4 0.1 2.4 7.5 0.0 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_2 PF07724.14 gi|336252109|ref|YP_004595216.1| - 0.035 14.2 0.0 0.074 13.2 0.0 1.5 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) zf-ribbon_3 PF13248.6 gi|336252110|ref|YP_004595217.1| - 0.0014 18.0 2.7 0.0024 17.2 2.7 1.5 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|336252110|ref|YP_004595217.1| - 0.0031 17.5 0.1 0.0034 17.4 0.1 1.2 1 0 0 1 1 1 1 Double zinc ribbon DNA_RNApol_7kD PF03604.13 gi|336252110|ref|YP_004595217.1| - 0.011 15.4 1.4 0.11 12.2 0.0 2.2 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-RING_7 PF02591.15 gi|336252110|ref|YP_004595217.1| - 0.026 14.7 0.0 0.026 14.7 0.0 1.6 2 0 0 2 2 2 0 C4-type zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|336252110|ref|YP_004595217.1| - 0.13 12.1 4.3 0.4 10.5 0.6 1.9 1 1 1 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|336252110|ref|YP_004595217.1| - 0.22 11.5 2.0 0.66 10.0 2.0 1.8 1 1 0 1 1 1 0 Transposase zinc-ribbon domain Ribosomal_L32p PF01783.23 gi|336252110|ref|YP_004595217.1| - 0.3 11.4 0.6 0.43 10.9 0.6 1.2 1 0 0 1 1 1 0 Ribosomal L32p protein family Zn-ribbon_8 PF09723.10 gi|336252110|ref|YP_004595217.1| - 0.32 11.1 4.0 0.45 10.7 0.2 2.1 1 1 0 2 2 2 0 Zinc ribbon domain UPF0547 PF10571.9 gi|336252110|ref|YP_004595217.1| - 0.41 10.8 4.6 2.7 8.2 0.5 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Ogr_Delta PF04606.12 gi|336252110|ref|YP_004595217.1| - 7 6.7 6.0 0.55 10.3 0.6 1.8 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger PEPcase PF00311.17 gi|336252111|ref|YP_004595218.1| - 1.3e-240 800.8 0.8 1.6e-239 797.1 0.0 2.1 2 0 0 2 2 2 1 Phosphoenolpyruvate carboxylase PEPcase_2 PF14010.6 gi|336252111|ref|YP_004595218.1| - 0.00084 18.0 0.0 0.0016 17.1 0.0 1.4 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase Activator-TraM PF11657.8 gi|336252111|ref|YP_004595218.1| - 0.083 12.7 1.5 0.55 10.1 0.1 2.7 2 1 1 3 3 3 0 Transcriptional activator TraM SchA_CurD PF04486.12 gi|336252111|ref|YP_004595218.1| - 0.16 12.0 0.5 3.1 7.9 0.1 2.7 2 0 0 2 2 2 0 SchA/CurD like domain Peptidase_M16 PF00675.20 gi|336252111|ref|YP_004595218.1| - 1.6 8.7 5.8 0.36 10.8 0.4 2.6 3 0 0 3 3 3 0 Insulinase (Peptidase family M16) DNA_RNApol_7kD PF03604.13 gi|336252112|ref|YP_004595219.1| - 0.015 15.0 1.4 0.029 14.0 1.4 1.5 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Zn-ribbon_8 PF09723.10 gi|336252112|ref|YP_004595219.1| - 0.031 14.4 0.7 0.064 13.4 0.7 1.5 1 0 0 1 1 1 0 Zinc ribbon domain HypA PF01155.19 gi|336252112|ref|YP_004595219.1| - 0.036 14.1 0.8 0.043 13.8 0.8 1.2 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA OrfB_Zn_ribbon PF07282.11 gi|336252112|ref|YP_004595219.1| - 0.14 12.1 2.4 0.33 10.9 1.4 1.9 2 0 0 2 2 2 0 Putative transposase DNA-binding domain zf-NADH-PPase PF09297.11 gi|336252112|ref|YP_004595219.1| - 0.26 11.0 5.0 1.9 8.2 5.0 2.3 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain FlhC PF05280.11 gi|336252112|ref|YP_004595219.1| - 1.4 8.6 4.0 6.7 6.4 0.3 2.0 1 1 1 2 2 2 0 Flagellar transcriptional activator (FlhC) adh_short PF00106.25 gi|336252113|ref|YP_004595220.1| - 1.9e-46 158.0 0.1 2.6e-46 157.6 0.1 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|336252113|ref|YP_004595220.1| - 2.1e-34 119.1 0.7 2.7e-34 118.7 0.7 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|336252113|ref|YP_004595220.1| - 5.2e-12 46.1 0.2 8.4e-12 45.4 0.2 1.4 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|336252113|ref|YP_004595220.1| - 0.004 16.6 0.1 0.0074 15.8 0.1 1.5 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family ADH_zinc_N PF00107.26 gi|336252113|ref|YP_004595220.1| - 0.0047 16.9 0.8 0.009 16.0 0.8 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Polysacc_synt_2 PF02719.15 gi|336252113|ref|YP_004595220.1| - 0.01 15.0 0.0 0.012 14.7 0.0 1.1 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein DFP PF04127.15 gi|336252113|ref|YP_004595220.1| - 0.016 15.0 0.4 0.03 14.2 0.4 1.4 1 0 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein Eno-Rase_NADH_b PF12242.8 gi|336252113|ref|YP_004595220.1| - 0.078 12.8 0.1 0.16 11.8 0.1 1.4 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase Methyltransf_25 PF13649.6 gi|336252113|ref|YP_004595220.1| - 0.088 13.5 0.1 0.23 12.2 0.1 1.8 1 0 0 1 1 1 0 Methyltransferase domain NAD_binding_7 PF13241.6 gi|336252113|ref|YP_004595220.1| - 0.11 12.9 0.4 0.26 11.8 0.4 1.6 1 0 0 1 1 1 0 Putative NAD(P)-binding 3HCDH_N PF02737.18 gi|336252113|ref|YP_004595220.1| - 0.15 11.9 0.2 0.29 11.0 0.2 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HTH_IclR PF09339.10 gi|336252114|ref|YP_004595221.1| - 0.00011 22.0 0.0 0.00021 21.0 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|336252114|ref|YP_004595221.1| - 0.00041 19.9 0.0 0.00072 19.1 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|336252114|ref|YP_004595221.1| - 0.00054 19.8 0.0 0.0013 18.6 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|336252114|ref|YP_004595221.1| - 0.0062 16.4 0.0 0.0098 15.7 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.6 gi|336252114|ref|YP_004595221.1| - 0.079 13.0 0.1 0.14 12.1 0.1 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Lactamase_B PF00753.27 gi|336252115|ref|YP_004595222.1| - 7.2e-17 62.0 8.8 8.7e-16 58.5 8.8 2.0 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|336252115|ref|YP_004595222.1| - 0.00012 21.7 1.6 0.0002 20.9 1.6 1.6 1 1 0 1 1 1 1 Beta-lactamase superfamily domain TTRAP PF14203.6 gi|336252115|ref|YP_004595222.1| - 0.18 11.8 0.1 0.67 10.0 0.1 1.9 2 0 0 2 2 2 0 Putative tranposon-transfer assisting protein ABC_tran PF00005.27 gi|336252116|ref|YP_004595223.1| - 1.7e-33 116.1 0.0 2.8e-33 115.3 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|336252116|ref|YP_004595223.1| - 1.1e-09 38.5 0.2 2.1e-05 24.5 0.1 2.3 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE_2 PF08402.10 gi|336252116|ref|YP_004595223.1| - 6.6e-06 26.2 0.3 6.6e-06 26.2 0.3 2.5 3 0 0 3 3 2 1 TOBE domain AAA_22 PF13401.6 gi|336252116|ref|YP_004595223.1| - 7.5e-05 23.0 0.1 0.00028 21.2 0.1 1.8 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|336252116|ref|YP_004595223.1| - 0.0016 17.9 0.0 0.14 11.5 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|336252116|ref|YP_004595223.1| - 0.0053 17.1 0.9 0.02 15.3 0.9 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|336252116|ref|YP_004595223.1| - 0.0089 16.5 0.2 0.07 13.6 0.1 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 gi|336252116|ref|YP_004595223.1| - 0.017 15.1 0.0 0.031 14.2 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain TOBE PF03459.17 gi|336252116|ref|YP_004595223.1| - 0.017 15.4 1.6 0.032 14.5 0.1 2.3 3 0 0 3 3 2 0 TOBE domain AAA_30 PF13604.6 gi|336252116|ref|YP_004595223.1| - 0.031 14.0 0.1 0.083 12.6 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|336252116|ref|YP_004595223.1| - 0.053 13.1 0.3 0.23 11.0 0.3 2.1 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|336252116|ref|YP_004595223.1| - 0.099 12.8 0.4 0.43 10.7 0.4 2.0 1 1 0 1 1 1 0 AAA domain ABC_ATPase PF09818.9 gi|336252116|ref|YP_004595223.1| - 0.11 11.3 0.6 0.44 9.3 0.0 2.2 2 1 0 2 2 2 0 Predicted ATPase of the ABC class RsgA_GTPase PF03193.16 gi|336252116|ref|YP_004595223.1| - 0.14 12.1 0.0 0.25 11.2 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase SbcCD_C PF13558.6 gi|336252116|ref|YP_004595223.1| - 0.18 12.0 0.4 1.7 8.9 0.4 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.6 gi|336252116|ref|YP_004595223.1| - 0.2 12.1 0.1 0.35 11.4 0.1 1.3 1 0 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.22 gi|336252117|ref|YP_004595224.1| - 2.6e-29 102.3 41.4 1.9e-16 60.4 11.2 3.0 3 1 0 3 3 3 2 Binding-protein-dependent transport system inner membrane component DUF3464 PF11947.8 gi|336252117|ref|YP_004595224.1| - 0.38 10.5 6.3 7 6.4 0.1 2.8 2 0 0 2 2 2 0 Photosynthesis affected mutant 68 Sm_multidrug_ex PF06695.11 gi|336252117|ref|YP_004595224.1| - 0.55 10.9 11.4 43 4.8 0.0 4.7 3 2 0 3 3 3 0 Putative small multi-drug export protein SBP_bac_6 PF13343.6 gi|336252118|ref|YP_004595225.1| - 6.5e-24 84.7 0.0 9.2e-24 84.2 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|336252118|ref|YP_004595225.1| - 2e-17 64.0 0.4 2.4e-17 63.6 0.4 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|336252118|ref|YP_004595225.1| - 1.4e-08 35.1 3.1 3e-08 34.0 3.1 1.5 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|336252118|ref|YP_004595225.1| - 0.099 12.4 0.0 0.14 11.9 0.0 1.3 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein TAT_signal PF10518.9 gi|336252118|ref|YP_004595225.1| - 0.3 11.0 2.9 0.45 10.4 2.9 1.3 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence HisKA_7TM PF16927.5 gi|336252121|ref|YP_004595228.1| - 1.5e-44 152.7 20.1 2e-44 152.3 20.1 1.1 1 0 0 1 1 1 1 N-terminal 7TM region of histidine kinase HATPase_c PF02518.26 gi|336252121|ref|YP_004595228.1| - 1.1e-14 54.9 0.0 2.1e-14 54.0 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|336252121|ref|YP_004595228.1| - 3.1e-13 49.5 1.3 2.7e-12 46.6 0.2 2.3 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.10 gi|336252121|ref|YP_004595228.1| - 2.3e-11 43.9 0.3 1.4e-10 41.4 0.2 2.5 2 1 0 2 2 2 1 PAS fold PAS_9 PF13426.7 gi|336252121|ref|YP_004595228.1| - 4.7e-08 33.2 0.2 1.1e-07 32.1 0.0 1.7 2 0 0 2 2 2 1 PAS domain PAS PF00989.25 gi|336252121|ref|YP_004595228.1| - 1.5e-05 25.0 0.0 4.2e-05 23.5 0.0 1.8 1 1 0 1 1 1 1 PAS fold PAS_8 PF13188.7 gi|336252121|ref|YP_004595228.1| - 2.2e-05 24.4 0.3 0.00015 21.7 0.2 2.4 1 1 1 2 2 2 1 PAS domain PAS_7 PF12860.7 gi|336252121|ref|YP_004595228.1| - 3.6e-05 23.9 0.1 0.00053 20.1 0.1 2.4 1 1 0 1 1 1 1 PAS fold dCache_3 PF14827.6 gi|336252121|ref|YP_004595228.1| - 0.0001 22.1 0.6 0.0023 17.6 0.0 2.3 2 0 0 2 2 2 1 Double sensory domain of two-component sensor kinase L-fibroin PF05849.11 gi|336252121|ref|YP_004595228.1| - 0.015 14.6 0.1 0.3 10.3 0.0 2.3 2 0 0 2 2 2 0 Fibroin light chain (L-fibroin) HATPase_c_2 PF13581.6 gi|336252121|ref|YP_004595228.1| - 0.016 15.2 0.1 0.034 14.1 0.1 1.5 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain PAS_10 PF13596.6 gi|336252121|ref|YP_004595228.1| - 0.02 15.5 0.1 0.041 14.5 0.1 1.5 1 0 0 1 1 1 0 PAS domain FAD-oxidase_C PF02913.19 gi|336252122|ref|YP_004595229.1| - 5.9e-59 199.7 0.1 1e-58 198.9 0.1 1.4 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.23 gi|336252122|ref|YP_004595229.1| - 3e-42 143.7 0.3 7.5e-42 142.4 0.3 1.7 1 0 0 1 1 1 1 FAD binding domain Fer4_8 PF13183.6 gi|336252122|ref|YP_004595229.1| - 8.3e-11 42.2 4.6 1.9e-10 41.0 4.6 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|336252122|ref|YP_004595229.1| - 2.5e-10 40.7 4.4 4.7e-10 39.9 4.4 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|336252122|ref|YP_004595229.1| - 0.00028 21.4 4.1 0.00077 20.0 4.1 1.8 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|336252122|ref|YP_004595229.1| - 0.00069 19.7 8.6 0.029 14.5 10.3 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|336252122|ref|YP_004595229.1| - 0.001 19.1 9.7 0.15 12.2 1.2 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4 PF00037.27 gi|336252122|ref|YP_004595229.1| - 0.0041 16.9 11.5 0.055 13.3 3.2 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|336252122|ref|YP_004595229.1| - 0.01 16.0 7.1 0.062 13.5 7.5 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|336252122|ref|YP_004595229.1| - 0.013 15.7 3.1 0.18 11.9 0.2 2.6 2 0 0 2 2 2 0 4Fe-4S dicluster domain CCG PF02754.16 gi|336252122|ref|YP_004595229.1| - 0.02 15.1 0.1 0.82 9.9 0.0 3.1 3 0 0 3 3 3 0 Cysteine-rich domain Fer4_16 PF13484.6 gi|336252122|ref|YP_004595229.1| - 0.11 13.5 4.2 0.3 12.1 4.2 1.8 1 0 0 1 1 1 0 4Fe-4S double cluster binding domain Fer4_18 PF13746.6 gi|336252122|ref|YP_004595229.1| - 0.12 12.6 0.1 0.31 11.2 0.1 1.7 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|336252122|ref|YP_004595229.1| - 0.14 12.7 12.3 0.25 11.9 2.5 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_6 PF12837.7 gi|336252122|ref|YP_004595229.1| - 0.34 11.0 12.1 0.46 10.7 2.6 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Sod_Fe_N PF00081.22 gi|336252123|ref|YP_004595230.1| - 4.1e-30 104.1 0.6 8.1e-30 103.1 0.6 1.5 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, alpha-hairpin domain Sod_Fe_C PF02777.18 gi|336252123|ref|YP_004595230.1| - 1.2e-28 99.2 0.0 1.8e-28 98.7 0.0 1.3 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, C-terminal domain Podoplanin PF05808.11 gi|336252124|ref|YP_004595231.1| - 0.013 15.6 2.2 0.017 15.2 2.2 1.1 1 0 0 1 1 1 0 Podoplanin NDK PF00334.19 gi|336252125|ref|YP_004595232.1| - 6.2e-53 178.4 0.0 7.2e-53 178.2 0.0 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase DUF2285 PF10074.9 gi|336252125|ref|YP_004595232.1| - 0.15 12.7 0.1 0.31 11.7 0.1 1.6 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2285) Ribosomal_L24e PF01246.20 gi|336252126|ref|YP_004595233.1| - 2.7e-21 75.5 0.0 3.3e-21 75.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L24e Ribosomal_S28e PF01200.18 gi|336252127|ref|YP_004595234.1| - 1.4e-28 98.7 0.8 1.5e-28 98.5 0.8 1.0 1 0 0 1 1 1 1 Ribosomal protein S28e Ribosomal_L7Ae PF01248.26 gi|336252128|ref|YP_004595235.1| - 3e-24 84.5 0.0 3.9e-24 84.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.6 gi|336252128|ref|YP_004595235.1| - 1.9e-05 24.5 0.0 2.5e-05 24.1 0.0 1.2 1 0 0 1 1 1 1 PELOTA RNA binding domain eRF1_3 PF03465.15 gi|336252128|ref|YP_004595235.1| - 0.083 13.4 0.1 0.14 12.7 0.1 1.5 1 1 0 1 1 1 0 eRF1 domain 3 DUF1269 PF06897.12 gi|336252128|ref|YP_004595235.1| - 0.28 11.5 2.0 11 6.4 0.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1269) YbjQ_1 PF01906.17 gi|336252129|ref|YP_004595236.1| - 1.4e-34 118.8 2.5 1.6e-34 118.6 2.5 1.0 1 0 0 1 1 1 1 Putative heavy-metal-binding DUF4156 PF13698.6 gi|336252129|ref|YP_004595236.1| - 0.012 15.9 0.1 0.025 14.9 0.0 1.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4156) Pan_kinase PF03309.14 gi|336252129|ref|YP_004595236.1| - 0.029 14.2 0.1 0.035 13.9 0.1 1.1 1 0 0 1 1 1 0 Type III pantothenate kinase Helicase_RecD PF05127.14 gi|336252130|ref|YP_004595237.1| - 2.6e-50 170.7 0.0 4.5e-50 169.9 0.0 1.4 1 0 0 1 1 1 1 Helicase GNAT_acetyltr_2 PF13718.6 gi|336252130|ref|YP_004595237.1| - 3.9e-44 150.8 0.0 1.4e-27 96.6 0.0 2.2 1 1 1 2 2 2 2 GNAT acetyltransferase 2 DUF1726 PF08351.11 gi|336252130|ref|YP_004595237.1| - 3.4e-28 97.4 0.0 8.1e-26 89.8 0.0 2.9 2 0 0 2 2 2 1 Domain of unknown function (DUF1726) AAA_30 PF13604.6 gi|336252130|ref|YP_004595237.1| - 2.4e-08 34.0 2.1 8.4e-08 32.2 1.2 2.2 2 0 0 2 2 2 1 AAA domain Acetyltransf_7 PF13508.7 gi|336252130|ref|YP_004595237.1| - 0.0018 18.7 0.0 0.005 17.2 0.0 1.8 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_13 PF13880.6 gi|336252130|ref|YP_004595237.1| - 0.0054 16.7 0.0 0.012 15.6 0.0 1.6 1 0 0 1 1 1 1 ESCO1/2 acetyl-transferase Acetyltransf_10 PF13673.7 gi|336252130|ref|YP_004595237.1| - 0.038 13.9 0.0 0.074 13.0 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain GBP_PSP PF02425.15 gi|336252131|ref|YP_004595238.1| - 0.18 11.5 0.5 0.18 11.5 0.5 1.8 2 0 0 2 2 2 0 Paralytic/GBP/PSP peptide adh_short PF00106.25 gi|336252132|ref|YP_004595239.1| - 2e-32 112.3 0.0 2.5e-32 111.9 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|336252132|ref|YP_004595239.1| - 9.4e-24 84.3 0.2 1.2e-23 83.9 0.2 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|336252132|ref|YP_004595239.1| - 3.3e-07 30.4 0.2 6.2e-07 29.5 0.2 1.4 1 1 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|336252132|ref|YP_004595239.1| - 3.1e-06 26.9 0.2 8.3e-06 25.4 0.2 1.7 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 gi|336252132|ref|YP_004595239.1| - 6.3e-06 26.2 0.4 1.1e-05 25.4 0.4 1.6 1 1 0 1 1 1 1 NAD(P)H-binding RmlD_sub_bind PF04321.17 gi|336252132|ref|YP_004595239.1| - 0.074 12.1 0.1 0.11 11.5 0.1 1.2 1 0 0 1 1 1 0 RmlD substrate binding domain DFP PF04127.15 gi|336252132|ref|YP_004595239.1| - 0.17 11.7 0.0 0.29 10.9 0.0 1.3 1 0 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein DUF456 PF04306.13 gi|336252133|ref|YP_004595240.1| - 3.5e-25 88.9 24.9 3.5e-25 88.9 24.9 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF456) DUF2976 PF11190.8 gi|336252133|ref|YP_004595240.1| - 7.1 6.5 9.9 0.17 11.7 2.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2976) CarboxypepD_reg PF13620.6 gi|336252134|ref|YP_004595241.1| - 4.3e-26 91.0 16.8 1.1e-15 57.7 3.0 3.0 3 0 0 3 3 3 2 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|336252134|ref|YP_004595241.1| - 3.8e-16 58.8 0.9 7.4e-07 29.1 0.2 2.3 2 0 0 2 2 2 2 CarboxypepD_reg-like domain PEGA PF08308.11 gi|336252134|ref|YP_004595241.1| - 5.4e-13 48.6 0.3 0.00012 22.0 0.1 3.4 3 0 0 3 3 3 3 PEGA domain DUF2012 PF09430.10 gi|336252134|ref|YP_004595241.1| - 9.1e-06 25.8 0.0 0.16 12.1 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF2012) CooC_C PF15976.5 gi|336252134|ref|YP_004595241.1| - 2.9e-05 24.0 0.0 0.0032 17.5 0.0 2.4 2 0 0 2 2 2 1 CS1-pili formation C-terminal Big_6 PF17936.1 gi|336252134|ref|YP_004595241.1| - 5.1e-05 23.5 11.0 0.0057 16.9 1.5 4.0 3 2 0 3 3 3 2 Bacterial Ig domain SdrD_B PF17210.3 gi|336252134|ref|YP_004595241.1| - 0.00085 19.5 2.1 0.0022 18.2 0.6 2.2 2 0 0 2 2 2 1 SdrD B-like domain fn3_3 PF14686.6 gi|336252134|ref|YP_004595241.1| - 0.0024 17.6 5.0 0.023 14.5 0.7 2.6 2 0 0 2 2 2 1 Polysaccharide lyase family 4, domain II phage_tail_N PF08400.10 gi|336252134|ref|YP_004595241.1| - 0.0038 17.2 2.2 0.58 10.2 0.6 2.5 2 1 0 2 2 2 2 Prophage tail fibre N-terminal DUF1416 PF07210.12 gi|336252134|ref|YP_004595241.1| - 0.004 17.0 6.9 0.54 10.2 0.1 3.3 3 1 0 3 3 3 2 Protein of unknown function (DUF1416) SpaA PF17802.1 gi|336252134|ref|YP_004595241.1| - 0.0063 16.8 6.4 0.028 14.7 0.7 2.5 2 1 0 2 2 2 1 Prealbumin-like fold domain MetallophosN PF16371.5 gi|336252134|ref|YP_004595241.1| - 0.021 15.1 2.7 0.55 10.5 0.3 2.4 2 0 0 2 2 2 0 N terminal of Calcineurin-like phosphoesterase DUF3869 PF12985.7 gi|336252134|ref|YP_004595241.1| - 0.025 15.0 6.8 0.37 11.2 0.6 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF3869) DUF1533 PF07550.11 gi|336252134|ref|YP_004595241.1| - 0.026 14.4 0.1 1 9.3 0.0 2.8 2 1 0 2 2 2 0 Protein of unknown function (DUF1533) BiPBP_C PF06832.12 gi|336252134|ref|YP_004595241.1| - 0.028 14.5 1.5 0.34 11.0 0.0 3.0 4 0 0 4 4 4 0 Penicillin-Binding Protein C-terminus Family Cadherin-like PF12733.7 gi|336252134|ref|YP_004595241.1| - 0.029 14.9 4.7 0.69 10.5 0.2 3.2 2 1 0 2 2 2 0 Cadherin-like beta sandwich domain Copper-bind PF00127.20 gi|336252135|ref|YP_004595242.1| - 1e-08 35.5 1.0 2.3e-08 34.4 0.0 2.0 2 0 0 2 2 2 1 Copper binding proteins, plastocyanin/azurin family TAT_signal PF10518.9 gi|336252135|ref|YP_004595242.1| - 2.3e-06 27.2 0.3 3.3e-06 26.7 0.3 1.3 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence tRNA-synt_1c PF00749.21 gi|336252136|ref|YP_004595243.1| - 8.2e-61 205.6 0.0 1.1e-60 205.2 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.18 gi|336252136|ref|YP_004595243.1| - 1.5e-19 70.5 0.0 4.9e-19 68.9 0.0 1.9 1 1 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain TspO_MBR PF03073.15 gi|336252137|ref|YP_004595244.1| - 7.9e-40 136.0 17.4 9.1e-40 135.8 17.4 1.0 1 0 0 1 1 1 1 TspO/MBR family CcmF_C PF16327.5 gi|336252137|ref|YP_004595244.1| - 0.0035 16.7 2.9 0.0041 16.4 2.9 1.1 1 0 0 1 1 1 1 Cytochrome c-type biogenesis protein CcmF C-terminal FeoB_associated PF12669.7 gi|336252137|ref|YP_004595244.1| - 4.3 7.8 0.0 4.3 7.8 0.0 3.1 3 0 0 3 3 3 0 FeoB-associated Cys-rich membrane protein polyprenyl_synt PF00348.17 gi|336252138|ref|YP_004595245.1| - 9e-65 218.3 0.1 1.1e-64 218.0 0.1 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase Lactamase_B_2 PF12706.7 gi|336252139|ref|YP_004595246.1| - 7.6e-09 35.4 2.8 3e-07 30.2 0.2 2.6 3 0 0 3 3 3 2 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|336252139|ref|YP_004595246.1| - 3.1e-07 30.6 1.7 1e-06 28.9 1.7 1.9 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.12 gi|336252139|ref|YP_004595246.1| - 2e-05 24.5 0.2 0.00079 19.3 0.0 2.7 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain adh_short_C2 PF13561.6 gi|336252140|ref|YP_004595247.1| - 2.8e-69 233.2 0.8 3.4e-69 233.0 0.8 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|336252140|ref|YP_004595247.1| - 1.7e-57 194.1 0.3 2e-57 193.8 0.3 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|336252140|ref|YP_004595247.1| - 3.7e-12 46.5 0.4 5.1e-12 46.1 0.4 1.2 1 0 0 1 1 1 1 KR domain HTH_Tnp_Tc3_1 PF11427.8 gi|336252140|ref|YP_004595247.1| - 0.0036 17.1 0.1 0.0085 15.9 0.1 1.5 1 0 0 1 1 1 1 Tc3 transposase Epimerase PF01370.21 gi|336252140|ref|YP_004595247.1| - 0.013 15.0 0.2 0.1 12.1 0.2 2.0 1 1 0 1 1 1 0 NAD dependent epimerase/dehydratase family AA_kinase PF00696.28 gi|336252141|ref|YP_004595248.1| - 1e-36 126.8 4.6 1.3e-36 126.4 4.6 1.0 1 0 0 1 1 1 1 Amino acid kinase family GHMP_kinases_N PF00288.26 gi|336252142|ref|YP_004595249.1| - 2.3e-16 59.8 0.8 5.5e-16 58.6 0.8 1.7 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|336252142|ref|YP_004595249.1| - 2.3e-15 56.7 1.6 1.2e-14 54.4 0.1 2.3 2 0 0 2 2 2 1 GHMP kinases C terminal GalKase_gal_bdg PF10509.9 gi|336252142|ref|YP_004595249.1| - 0.00028 20.4 0.1 0.00062 19.3 0.1 1.6 1 0 0 1 1 1 1 Galactokinase galactose-binding signature ThiP_synth PF10120.9 gi|336252143|ref|YP_004595250.1| - 2.2e-52 177.0 0.3 3.1e-52 176.5 0.3 1.2 1 0 0 1 1 1 1 Thiamine-phosphate synthase HTH_3 PF01381.22 gi|336252143|ref|YP_004595250.1| - 1.2e-05 25.3 0.1 3.2e-05 23.9 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix MarR_2 PF12802.7 gi|336252143|ref|YP_004595250.1| - 2.2e-05 24.2 0.3 0.00057 19.7 0.1 2.7 2 0 0 2 2 2 1 MarR family HTH_23 PF13384.6 gi|336252143|ref|YP_004595250.1| - 9.5e-05 22.1 0.0 0.00044 20.0 0.0 2.2 1 0 0 1 1 1 1 Homeodomain-like domain HTH_31 PF13560.6 gi|336252143|ref|YP_004595250.1| - 0.00026 21.2 3.0 0.00052 20.3 0.4 2.8 2 1 0 2 2 2 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|336252143|ref|YP_004595250.1| - 0.0013 18.2 0.1 0.0052 16.3 0.0 2.0 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_24 PF13412.6 gi|336252143|ref|YP_004595250.1| - 0.0013 18.3 0.0 0.0028 17.2 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_37 PF13744.6 gi|336252143|ref|YP_004595250.1| - 0.0021 18.0 0.0 0.0051 16.7 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|336252143|ref|YP_004595250.1| - 0.0027 17.7 0.0 0.017 15.1 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain YdaS_antitoxin PF15943.5 gi|336252143|ref|YP_004595250.1| - 0.011 15.6 0.0 0.026 14.4 0.0 1.7 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_38 PF13936.6 gi|336252143|ref|YP_004595250.1| - 0.013 15.3 0.1 0.051 13.3 0.0 2.0 3 0 0 3 3 2 0 Helix-turn-helix domain HTH_28 PF13518.6 gi|336252143|ref|YP_004595250.1| - 0.018 15.1 0.0 0.21 11.8 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|336252143|ref|YP_004595250.1| - 0.024 14.3 0.1 0.055 13.1 0.1 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 RepB PF07506.11 gi|336252143|ref|YP_004595250.1| - 0.046 13.8 0.0 0.086 12.9 0.0 1.4 1 0 0 1 1 1 0 RepB plasmid partitioning protein HTH_5 PF01022.20 gi|336252143|ref|YP_004595250.1| - 0.049 13.5 0.0 0.1 12.5 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family TetR_N PF00440.23 gi|336252143|ref|YP_004595250.1| - 0.12 12.1 0.9 0.36 10.7 0.1 2.2 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family HTH_11 PF08279.12 gi|336252143|ref|YP_004595250.1| - 0.16 12.0 0.0 0.33 10.9 0.0 1.5 1 0 0 1 1 1 0 HTH domain Kelch_1 PF01344.25 gi|336252143|ref|YP_004595250.1| - 0.18 11.4 0.0 0.46 10.1 0.0 1.7 1 0 0 1 1 1 0 Kelch motif Trp_repressor PF01371.19 gi|336252143|ref|YP_004595250.1| - 0.2 11.8 0.1 0.56 10.4 0.1 1.7 1 0 0 1 1 1 0 Trp repressor protein P22_Cro PF14549.6 gi|336252143|ref|YP_004595250.1| - 0.28 11.1 0.7 0.63 9.9 0.1 1.9 2 0 0 2 2 1 0 DNA-binding transcriptional regulator Cro Ribosomal_S2 PF00318.20 gi|336252145|ref|YP_004595252.1| - 2.4e-24 85.8 0.5 5.9e-14 51.8 1.0 2.1 1 1 1 2 2 2 2 Ribosomal protein S2 tRNA_synt_1c_R2 PF04557.15 gi|336252145|ref|YP_004595252.1| - 0.074 14.0 3.4 0.073 14.0 1.9 1.7 2 0 0 2 2 2 0 Glutaminyl-tRNA synthetase, non-specific RNA binding region part 2 Enolase_C PF00113.22 gi|336252146|ref|YP_004595253.1| - 1.3e-77 261.0 1.0 1.7e-77 260.6 1.0 1.1 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.16 gi|336252146|ref|YP_004595253.1| - 7.5e-35 120.0 1.5 2.1e-34 118.5 0.2 2.4 2 2 0 2 2 2 1 Enolase, N-terminal domain MR_MLE_C PF13378.6 gi|336252146|ref|YP_004595253.1| - 7.8e-11 42.0 0.1 1.5e-10 41.0 0.1 1.5 1 0 0 1 1 1 1 Enolase C-terminal domain-like MAAL_C PF07476.11 gi|336252146|ref|YP_004595253.1| - 0.00034 19.9 0.1 0.00068 18.9 0.1 1.4 1 0 0 1 1 1 1 Methylaspartate ammonia-lyase C-terminus RNA_pol_Rpb6 PF01192.22 gi|336252147|ref|YP_004595254.1| - 2.8e-11 43.2 0.0 3.2e-11 43.0 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb6 RNA_pol_N PF01194.17 gi|336252148|ref|YP_004595255.1| - 9.5e-29 99.5 0.2 1e-28 99.4 0.2 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Ribosomal_S9 PF00380.19 gi|336252149|ref|YP_004595256.1| - 5.8e-33 114.0 0.1 6.5e-33 113.8 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 Ribosomal_L13 PF00572.18 gi|336252150|ref|YP_004595257.1| - 5.2e-10 39.6 0.1 2.6e-06 27.7 0.0 2.4 1 1 1 2 2 2 2 Ribosomal protein L13 Ribosomal_L18 PF17135.4 gi|336252151|ref|YP_004595258.1| - 2e-08 33.9 0.0 2.1e-08 33.8 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein 60S L18 and 50S L18e Ribosomal_L27A PF00828.19 gi|336252151|ref|YP_004595258.1| - 2.2e-06 28.3 0.3 7.7e-06 26.6 0.3 1.7 1 1 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A RNA_pol_A_bac PF01000.26 gi|336252152|ref|YP_004595259.1| - 7.8e-21 74.6 0.0 3.8e-20 72.3 0.0 2.1 2 1 0 2 2 2 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.24 gi|336252152|ref|YP_004595259.1| - 4.5e-17 61.2 0.0 5.8e-17 60.9 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Ribosomal_S11 PF00411.19 gi|336252153|ref|YP_004595260.1| - 3.8e-47 159.2 2.5 4.9e-47 158.9 2.5 1.1 1 0 0 1 1 1 1 Ribosomal protein S11 Ribosomal_L18p PF00861.22 gi|336252153|ref|YP_004595260.1| - 0.016 15.6 0.1 0.022 15.1 0.1 1.2 1 0 0 1 1 1 0 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast S4 PF01479.25 gi|336252154|ref|YP_004595261.1| - 4.7e-14 51.8 1.9 5.7e-14 51.6 0.3 1.9 2 0 0 2 2 2 1 S4 domain Ribosomal_S4 PF00163.19 gi|336252154|ref|YP_004595261.1| - 0.00084 20.2 1.6 0.0011 19.8 1.0 1.6 1 1 1 2 2 2 1 Ribosomal protein S4/S9 N-terminal domain Ribosomal_S13 PF00416.22 gi|336252155|ref|YP_004595262.1| - 2.7e-45 153.9 3.1 3.4e-45 153.6 3.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S13/S18 FbpA PF05833.11 gi|336252155|ref|YP_004595262.1| - 0.013 14.3 0.0 0.013 14.3 0.0 1.1 1 0 0 1 1 1 0 Fibronectin-binding protein A N-terminus (FbpA) DUF4129 PF13559.6 gi|336252156|ref|YP_004595263.1| - 2.7e-09 37.2 2.3 2.7e-09 37.2 2.3 2.2 2 1 1 3 3 2 1 Domain of unknown function (DUF4129) MARVEL PF01284.23 gi|336252156|ref|YP_004595263.1| - 0.00022 21.3 0.2 0.00066 19.7 0.1 1.7 2 0 0 2 2 2 1 Membrane-associating domain Cyt_bd_oxida_II PF02322.15 gi|336252156|ref|YP_004595263.1| - 0.00043 19.8 0.2 0.00061 19.3 0.2 1.3 1 1 0 1 1 1 1 Cytochrome bd terminal oxidase subunit II Glucos_trans_II PF14264.6 gi|336252156|ref|YP_004595263.1| - 0.014 14.8 0.7 0.014 14.8 0.7 1.4 2 0 0 2 2 2 0 Glucosyl transferase GtrII DUF983 PF06170.12 gi|336252156|ref|YP_004595263.1| - 0.06 13.8 3.9 1.9 8.9 4.4 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF983) DUF2070 PF09843.9 gi|336252156|ref|YP_004595263.1| - 0.26 9.5 0.3 0.39 8.9 0.3 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) DUF2157 PF09925.9 gi|336252156|ref|YP_004595263.1| - 0.55 10.0 4.4 6.9 6.4 4.1 2.4 3 0 0 3 3 3 0 Predicted membrane protein (DUF2157) MFS_1 PF07690.16 gi|336252156|ref|YP_004595263.1| - 0.58 9.0 6.9 0.14 11.0 0.7 2.3 3 0 0 3 3 3 0 Major Facilitator Superfamily DUF4131 PF13567.6 gi|336252156|ref|YP_004595263.1| - 0.67 9.6 4.1 0.42 10.2 1.7 1.9 3 0 0 3 3 3 0 Domain of unknown function (DUF4131) PTPS_related PF10131.9 gi|336252156|ref|YP_004595263.1| - 0.98 7.7 2.6 1.5 7.0 2.6 1.2 1 0 0 1 1 1 0 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein Oxidored_q2 PF00420.24 gi|336252156|ref|YP_004595263.1| - 1.2 8.8 6.6 0.23 11.1 0.7 2.2 2 0 0 2 2 2 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF2569 PF10754.9 gi|336252156|ref|YP_004595263.1| - 2 8.9 6.8 0.11 12.9 0.9 1.9 3 0 0 3 3 3 0 Protein of unknown function (DUF2569) Wzy_C PF04932.15 gi|336252156|ref|YP_004595263.1| - 2.6 7.7 6.6 27 4.4 7.6 1.8 2 1 0 2 2 2 0 O-Antigen ligase DUF58 PF01882.18 gi|336252157|ref|YP_004595264.1| - 2.1e-19 69.6 0.4 6.2e-19 68.1 0.2 1.9 2 0 0 2 2 2 1 Protein of unknown function DUF58 DUF11 PF01345.18 gi|336252157|ref|YP_004595264.1| - 1.2e-09 38.4 0.0 6.6e-09 36.0 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function DUF11 Glyco_transf_4 PF13439.6 gi|336252157|ref|YP_004595264.1| - 0.05 13.6 0.1 0.16 12.0 0.1 1.8 1 0 0 1 1 1 0 Glycosyltransferase Family 4 Phage_holin_3_6 PF07332.11 gi|336252157|ref|YP_004595264.1| - 0.64 10.1 11.0 0.047 13.7 3.5 2.6 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III Sensor PF13796.6 gi|336252157|ref|YP_004595264.1| - 1.9 8.5 14.0 0.17 11.9 7.5 2.3 2 0 0 2 2 2 0 Putative sensor VPDSG-CTERM PF18205.1 gi|336252157|ref|YP_004595264.1| - 7.6 6.5 11.1 0.46 10.3 2.0 3.4 2 0 0 2 2 2 0 VPDSG-CTERM motif Radical_SAM PF04055.21 gi|336252159|ref|YP_004595266.1| - 6.2e-24 85.2 0.0 1.2e-23 84.3 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Mob_synth_C PF06463.13 gi|336252159|ref|YP_004595266.1| - 2.6e-15 56.5 0.1 1.1e-14 54.5 0.1 2.0 1 1 0 1 1 1 1 Molybdenum Cofactor Synthesis C Fer4_12 PF13353.6 gi|336252159|ref|YP_004595266.1| - 1.7e-07 31.6 0.0 3.5e-07 30.6 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|336252159|ref|YP_004595266.1| - 1.5e-06 28.4 0.0 3.6e-06 27.1 0.0 1.6 1 0 0 1 1 1 1 4Fe-4S single cluster domain PAS_3 PF08447.12 gi|336252159|ref|YP_004595266.1| - 0.013 15.7 0.0 0.039 14.2 0.0 1.7 1 0 0 1 1 1 0 PAS fold Cytochrom_C PF00034.21 gi|336252159|ref|YP_004595266.1| - 0.22 12.7 1.0 14 6.9 0.0 3.1 3 1 0 3 3 3 0 Cytochrome c HTH_10 PF04967.12 gi|336252160|ref|YP_004595267.1| - 1.7e-17 62.9 0.1 3.4e-17 62.0 0.1 1.5 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|336252160|ref|YP_004595267.1| - 2.4e-11 43.8 2.6 3.5e-11 43.2 2.6 1.2 1 0 0 1 1 1 1 GAF and HTH_10 associated domain MarR_2 PF12802.7 gi|336252160|ref|YP_004595267.1| - 0.022 14.6 0.1 0.084 12.8 0.0 2.0 2 0 0 2 2 2 0 MarR family DUF1463 PF07316.11 gi|336252160|ref|YP_004595267.1| - 0.099 12.5 0.0 0.17 11.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1463) RtcB PF01139.17 gi|336252162|ref|YP_004595269.1| - 2.1e-157 524.5 0.1 2.4e-157 524.4 0.1 1.0 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB DoxX PF07681.12 gi|336252163|ref|YP_004595270.1| - 9.2e-08 32.6 9.9 9.2e-08 32.6 9.9 3.9 3 1 0 3 3 3 2 DoxX DoxD PF04173.13 gi|336252163|ref|YP_004595270.1| - 0.0048 16.8 9.4 0.045 13.6 1.2 3.5 3 1 0 3 3 3 2 TQO small subunit DoxD Wzy_C PF04932.15 gi|336252163|ref|YP_004595270.1| - 0.041 13.5 5.6 1.9 8.1 2.6 2.6 2 0 0 2 2 2 0 O-Antigen ligase DUF4321 PF14209.6 gi|336252163|ref|YP_004595270.1| - 0.074 12.9 1.3 0.22 11.4 1.3 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF4321) DoxX_3 PF13781.6 gi|336252163|ref|YP_004595270.1| - 6.7 7.4 18.8 4.4 8.0 5.6 2.9 2 1 0 2 2 2 0 DoxX-like family Archease PF01951.16 gi|336252165|ref|YP_004595272.1| - 3.7e-37 127.6 0.1 4.2e-37 127.5 0.1 1.0 1 0 0 1 1 1 1 Archease protein family (MTH1598/TM1083) Acetyltransf_7 PF13508.7 gi|336252166|ref|YP_004595273.1| - 2.8e-15 56.5 0.1 4.6e-15 55.8 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|336252166|ref|YP_004595273.1| - 3.7e-15 56.0 0.1 4.5e-15 55.7 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|336252166|ref|YP_004595273.1| - 3.9e-14 52.9 0.2 5.5e-14 52.4 0.2 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family FR47 PF08445.10 gi|336252166|ref|YP_004595273.1| - 7.9e-10 38.6 0.0 1.2e-09 38.0 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.7 gi|336252166|ref|YP_004595273.1| - 0.00061 20.0 0.1 0.0012 19.0 0.1 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|336252166|ref|YP_004595273.1| - 0.00081 19.6 0.1 0.0014 18.8 0.1 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|336252166|ref|YP_004595273.1| - 0.0025 17.9 0.0 0.0083 16.2 0.0 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|336252166|ref|YP_004595273.1| - 0.0038 17.3 0.0 0.0065 16.6 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_18 PF18014.1 gi|336252166|ref|YP_004595273.1| - 0.055 13.3 0.0 0.12 12.2 0.0 1.5 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain NTS_2 PF15448.6 gi|336252166|ref|YP_004595273.1| - 2.9 8.3 5.5 1.8 9.1 3.3 1.7 2 0 0 2 2 2 0 N-terminal segments of P. falciparum erythrocyte membrane protein HTH_20 PF12840.7 gi|336252167|ref|YP_004595274.1| - 1.4e-12 47.5 1.2 3.2e-12 46.3 1.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|336252167|ref|YP_004595274.1| - 4e-06 26.6 0.3 5.4e-05 23.0 0.3 2.3 1 1 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_12 PF08461.10 gi|336252167|ref|YP_004595274.1| - 0.0026 17.7 0.4 0.0048 16.8 0.4 1.5 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain PadR PF03551.14 gi|336252167|ref|YP_004595274.1| - 0.0026 17.7 0.2 0.0051 16.7 0.2 1.5 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family TFIIE_alpha PF02002.17 gi|336252167|ref|YP_004595274.1| - 0.0031 17.3 0.0 0.005 16.7 0.0 1.4 1 0 0 1 1 1 1 TFIIE alpha subunit PqqD PF05402.12 gi|336252167|ref|YP_004595274.1| - 0.0048 17.2 1.9 0.33 11.3 0.0 2.6 2 1 0 2 2 2 1 Coenzyme PQQ synthesis protein D (PqqD) TrmB PF01978.19 gi|336252167|ref|YP_004595274.1| - 0.04 13.8 0.0 0.1 12.5 0.0 1.7 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Cdc6_C PF09079.11 gi|336252167|ref|YP_004595274.1| - 0.1 12.6 0.1 0.2 11.6 0.1 1.5 1 0 0 1 1 1 0 CDC6, C terminal winged helix domain HTH_24 PF13412.6 gi|336252167|ref|YP_004595274.1| - 0.17 11.5 0.1 0.44 10.1 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HMA PF00403.26 gi|336252168|ref|YP_004595275.1| - 1.4e-12 47.8 0.1 1.6e-12 47.7 0.1 1.0 1 0 0 1 1 1 1 Heavy-metal-associated domain Tox-PL-2 PF15643.6 gi|336252168|ref|YP_004595275.1| - 0.001 19.1 0.0 0.0011 19.1 0.0 1.0 1 0 0 1 1 1 1 Papain fold toxin 2 Thioredoxin_4 PF13462.6 gi|336252168|ref|YP_004595275.1| - 0.0037 17.4 0.0 0.0039 17.4 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin E1-E2_ATPase PF00122.20 gi|336252169|ref|YP_004595276.1| - 1.3e-45 155.1 2.0 1.3e-45 155.1 2.0 1.9 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.26 gi|336252169|ref|YP_004595276.1| - 7.2e-40 137.5 6.5 7.2e-40 137.5 6.5 1.7 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|336252169|ref|YP_004595276.1| - 0.00082 19.8 0.4 0.00082 19.8 0.4 2.6 3 1 0 3 3 3 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|336252169|ref|YP_004595276.1| - 0.0013 18.5 1.4 0.13 12.0 1.3 2.3 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|336252169|ref|YP_004595276.1| - 0.003 17.6 0.8 0.019 15.1 0.0 2.7 4 0 0 4 4 4 1 Haloacid dehalogenase-like hydrolase CBS PF00571.28 gi|336252169|ref|YP_004595276.1| - 0.04 14.4 0.2 0.18 12.3 0.0 2.3 2 0 0 2 2 2 0 CBS domain FmdE PF02663.14 gi|336252170|ref|YP_004595277.1| - 3.9e-05 23.7 0.0 9.5e-05 22.5 0.0 1.6 1 1 0 1 1 1 1 FmdE, Molybdenum formylmethanofuran dehydrogenase operon DNA_primase_S PF01896.19 gi|336252171|ref|YP_004595278.1| - 2e-23 83.3 0.0 4.8e-23 82.1 0.0 1.6 1 1 0 1 1 1 1 DNA primase small subunit Sld5 PF05916.11 gi|336252172|ref|YP_004595279.1| - 0.00042 20.8 0.1 0.00067 20.1 0.1 1.3 1 0 0 1 1 1 1 GINS complex protein CorA PF01544.18 gi|336252172|ref|YP_004595279.1| - 0.15 11.3 1.0 0.26 10.6 0.6 1.5 2 0 0 2 2 2 0 CorA-like Mg2+ transporter protein AhpC-TSA PF00578.21 gi|336252173|ref|YP_004595280.1| - 5.3e-34 116.8 0.0 6.4e-34 116.5 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|336252173|ref|YP_004595280.1| - 4.3e-17 62.2 0.0 5.1e-17 61.9 0.0 1.0 1 0 0 1 1 1 1 Redoxin SCO1-SenC PF02630.14 gi|336252173|ref|YP_004595280.1| - 7.5e-07 29.1 0.0 1e-06 28.7 0.0 1.3 1 0 0 1 1 1 1 SCO1/SenC DUF899 PF05988.12 gi|336252173|ref|YP_004595280.1| - 0.0016 18.0 0.0 0.0018 17.8 0.0 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF899) HTH_24 PF13412.6 gi|336252174|ref|YP_004595281.1| - 3.7e-13 48.8 0.1 5.7e-13 48.2 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|336252174|ref|YP_004595281.1| - 4.8e-12 45.5 0.9 8.9e-12 44.6 0.9 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.7 gi|336252174|ref|YP_004595281.1| - 0.00011 22.0 0.1 0.00029 20.7 0.0 1.7 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.7 gi|336252174|ref|YP_004595281.1| - 0.0002 21.4 0.0 0.00035 20.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain BAT PF15915.5 gi|336252174|ref|YP_004595281.1| - 0.00022 21.1 1.8 0.00041 20.3 1.8 1.3 1 0 0 1 1 1 1 GAF and HTH_10 associated domain HTH_11 PF08279.12 gi|336252174|ref|YP_004595281.1| - 0.0013 18.6 0.1 0.0035 17.2 0.0 1.6 2 0 0 2 2 2 1 HTH domain HTH_CodY PF08222.11 gi|336252174|ref|YP_004595281.1| - 0.0015 18.1 0.3 0.0034 16.9 0.3 1.6 1 0 0 1 1 1 1 CodY helix-turn-helix domain TrmB PF01978.19 gi|336252174|ref|YP_004595281.1| - 0.005 16.7 0.0 4.2 7.3 0.0 2.4 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|336252174|ref|YP_004595281.1| - 0.0068 16.3 0.0 0.016 15.1 0.0 1.6 2 0 0 2 2 2 1 MarR family HTH_Crp_2 PF13545.6 gi|336252174|ref|YP_004595281.1| - 0.0094 15.9 0.0 0.023 14.7 0.0 1.7 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_27 PF13463.6 gi|336252174|ref|YP_004595281.1| - 0.0097 16.4 0.1 0.028 14.9 0.0 1.8 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_IclR PF09339.10 gi|336252174|ref|YP_004595281.1| - 0.011 15.5 0.0 0.018 14.8 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain Glyco_hydro_101 PF12905.7 gi|336252174|ref|YP_004595281.1| - 0.017 14.6 0.0 0.023 14.1 0.0 1.2 1 0 0 1 1 1 0 Endo-alpha-N-acetylgalactosaminidase P2 PF07194.11 gi|336252174|ref|YP_004595281.1| - 0.022 14.8 0.3 0.094 12.8 0.0 1.9 2 0 0 2 2 2 0 P2 response regulator binding domain HTH_23 PF13384.6 gi|336252174|ref|YP_004595281.1| - 0.041 13.7 0.0 0.13 12.1 0.0 1.8 2 0 0 2 2 2 0 Homeodomain-like domain AsnC_trans_reg2 PF17805.1 gi|336252174|ref|YP_004595281.1| - 0.043 14.0 0.0 0.092 12.9 0.0 1.6 1 0 0 1 1 1 0 AsnC-like ligand binding domain DprA_WH PF17782.1 gi|336252174|ref|YP_004595281.1| - 0.045 13.9 0.3 0.13 12.4 0.1 1.8 2 0 0 2 2 2 0 DprA winged helix domain ALS_ss_C PF10369.9 gi|336252174|ref|YP_004595281.1| - 0.085 13.1 0.6 0.15 12.3 0.6 1.4 1 0 0 1 1 1 0 Small subunit of acetolactate synthase LexA_DNA_bind PF01726.16 gi|336252174|ref|YP_004595281.1| - 0.17 11.7 0.0 0.29 10.9 0.0 1.4 1 0 0 1 1 1 0 LexA DNA binding domain HalOD1 PF18545.1 gi|336252175|ref|YP_004595282.1| - 1e-20 73.8 0.2 1.4e-20 73.4 0.2 1.2 1 0 0 1 1 1 1 Halobacterial output domain 1 AAA PF00004.29 gi|336252176|ref|YP_004595283.1| - 1.7e-100 332.6 0.0 3.1e-49 166.8 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|336252176|ref|YP_004595283.1| - 3.8e-29 100.2 2.9 4.1e-16 58.5 0.2 2.9 2 1 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|336252176|ref|YP_004595283.1| - 2.2e-24 85.4 0.1 1.8e-23 82.5 0.1 2.5 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), N-terminal domain AAA_2 PF07724.14 gi|336252176|ref|YP_004595283.1| - 8.6e-17 61.8 0.1 4.5e-08 33.4 0.0 2.5 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) RuvB_N PF05496.12 gi|336252176|ref|YP_004595283.1| - 3.2e-16 59.5 0.0 7.3e-08 32.3 0.0 2.7 3 0 0 3 3 2 2 Holliday junction DNA helicase RuvB P-loop domain CDC48_2 PF02933.17 gi|336252176|ref|YP_004595283.1| - 4.4e-15 55.2 0.2 1.5e-14 53.5 0.2 1.9 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 AAA_16 PF13191.6 gi|336252176|ref|YP_004595283.1| - 2.2e-13 50.9 0.5 1e-05 26.0 0.1 3.7 2 2 0 2 2 2 2 AAA ATPase domain AAA_33 PF13671.6 gi|336252176|ref|YP_004595283.1| - 2.2e-11 44.1 0.0 0.00012 22.2 0.0 2.9 2 1 0 2 2 2 2 AAA domain AAA_5 PF07728.14 gi|336252176|ref|YP_004595283.1| - 1.3e-10 41.4 1.4 0.0006 19.8 0.1 4.6 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|336252176|ref|YP_004595283.1| - 1.3e-10 41.7 1.2 0.0026 18.1 0.0 4.0 3 2 2 5 5 4 2 AAA domain TIP49 PF06068.13 gi|336252176|ref|YP_004595283.1| - 3e-10 39.9 0.0 0.00027 20.3 0.0 2.3 2 0 0 2 2 2 2 TIP49 P-loop domain AAA_14 PF13173.6 gi|336252176|ref|YP_004595283.1| - 4.1e-09 36.6 0.0 0.0012 18.9 0.0 2.6 3 0 0 3 3 2 2 AAA domain RNA_helicase PF00910.22 gi|336252176|ref|YP_004595283.1| - 2.6e-08 34.2 0.0 0.0054 17.1 0.0 2.7 2 1 0 2 2 2 2 RNA helicase IstB_IS21 PF01695.17 gi|336252176|ref|YP_004595283.1| - 1.1e-07 31.8 0.0 0.0046 16.7 0.0 2.3 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_7 PF12775.7 gi|336252176|ref|YP_004595283.1| - 1.8e-07 30.9 0.0 0.022 14.3 0.0 2.6 2 1 0 2 2 2 2 P-loop containing dynein motor region DUF815 PF05673.13 gi|336252176|ref|YP_004595283.1| - 3.5e-07 29.6 0.0 0.0022 17.2 0.0 2.8 2 1 0 2 2 2 2 Protein of unknown function (DUF815) Mg_chelatase PF01078.21 gi|336252176|ref|YP_004595283.1| - 4.4e-07 29.5 0.5 0.013 14.8 0.1 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_25 PF13481.6 gi|336252176|ref|YP_004595283.1| - 8.7e-07 28.7 0.8 0.38 10.3 0.1 4.0 4 0 0 4 4 4 1 AAA domain AAA_3 PF07726.11 gi|336252176|ref|YP_004595283.1| - 1.5e-06 28.1 0.0 0.016 15.0 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 gi|336252176|ref|YP_004595283.1| - 2.1e-06 28.1 0.0 0.043 14.1 0.0 2.8 2 0 0 2 2 2 2 AAA domain TsaE PF02367.17 gi|336252176|ref|YP_004595283.1| - 2.8e-06 27.4 0.0 0.11 12.5 0.0 2.4 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE Sigma54_activat PF00158.26 gi|336252176|ref|YP_004595283.1| - 4.2e-06 26.6 0.1 0.12 12.1 0.0 3.4 4 1 0 4 4 3 2 Sigma-54 interaction domain AAA_18 PF13238.6 gi|336252176|ref|YP_004595283.1| - 5.1e-06 27.1 0.0 0.2 12.2 0.0 3.1 3 1 0 3 3 2 2 AAA domain ABC_tran PF00005.27 gi|336252176|ref|YP_004595283.1| - 5.2e-06 27.0 0.0 0.11 13.0 0.0 2.6 2 0 0 2 2 2 2 ABC transporter AAA_11 PF13086.6 gi|336252176|ref|YP_004595283.1| - 1.2e-05 25.2 0.0 0.13 12.1 0.0 2.4 2 0 0 2 2 2 2 AAA domain PhoH PF02562.16 gi|336252176|ref|YP_004595283.1| - 1.8e-05 24.3 0.1 0.065 12.7 0.0 2.4 2 0 0 2 2 2 2 PhoH-like protein NACHT PF05729.12 gi|336252176|ref|YP_004595283.1| - 1.9e-05 24.6 0.3 0.89 9.5 0.0 4.0 3 1 0 3 3 3 2 NACHT domain ATPase PF06745.13 gi|336252176|ref|YP_004595283.1| - 2e-05 24.1 0.2 0.23 10.8 0.0 3.4 2 1 1 3 3 3 2 KaiC AAA_24 PF13479.6 gi|336252176|ref|YP_004595283.1| - 2.1e-05 24.4 0.1 0.15 11.8 0.1 2.9 2 1 0 2 2 2 2 AAA domain AAA_30 PF13604.6 gi|336252176|ref|YP_004595283.1| - 2.8e-05 23.9 0.1 0.15 11.8 0.0 2.5 2 0 0 2 2 2 2 AAA domain NB-ARC PF00931.22 gi|336252176|ref|YP_004595283.1| - 3.5e-05 23.1 0.0 0.2 10.8 0.0 2.6 2 0 0 2 2 2 2 NB-ARC domain Zeta_toxin PF06414.12 gi|336252176|ref|YP_004595283.1| - 5.6e-05 22.5 0.1 0.18 11.1 0.0 2.5 2 0 0 2 2 2 2 Zeta toxin DUF2075 PF09848.9 gi|336252176|ref|YP_004595283.1| - 8.1e-05 22.0 0.0 0.27 10.4 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) Vps4_C PF09336.10 gi|336252176|ref|YP_004595283.1| - 0.00017 21.5 0.1 0.25 11.3 0.0 2.7 2 0 0 2 2 2 1 Vps4 C terminal oligomerisation domain ATPase_2 PF01637.18 gi|336252176|ref|YP_004595283.1| - 0.00018 21.5 0.0 1.1 9.2 0.0 3.6 2 2 2 4 4 4 1 ATPase domain predominantly from Archaea Bac_DnaA PF00308.18 gi|336252176|ref|YP_004595283.1| - 0.00033 20.6 0.0 0.16 11.8 0.0 2.5 2 0 0 2 2 2 1 Bacterial dnaA protein Parvo_NS1 PF01057.17 gi|336252176|ref|YP_004595283.1| - 0.00039 19.6 0.1 0.55 9.3 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 AAA_17 PF13207.6 gi|336252176|ref|YP_004595283.1| - 0.00095 19.6 0.0 2.8 8.4 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.6 gi|336252176|ref|YP_004595283.1| - 0.00095 19.5 0.3 2.5 8.4 0.2 2.7 2 1 1 3 3 2 1 AAA domain Sigma54_activ_2 PF14532.6 gi|336252176|ref|YP_004595283.1| - 0.00098 19.3 0.0 3 8.0 0.0 3.0 3 0 0 3 3 3 1 Sigma-54 interaction domain NTPase_1 PF03266.15 gi|336252176|ref|YP_004595283.1| - 0.001 19.0 0.5 1.9 8.4 0.0 3.7 3 2 1 4 4 2 1 NTPase Rad17 PF03215.15 gi|336252176|ref|YP_004595283.1| - 0.0063 16.5 0.0 5.4 6.9 0.0 3.0 3 0 0 3 3 3 0 Rad17 P-loop domain T2SSE PF00437.20 gi|336252176|ref|YP_004595283.1| - 0.0064 15.6 0.0 1.5 7.8 0.0 2.3 2 0 0 2 2 2 1 Type II/IV secretion system protein ResIII PF04851.15 gi|336252176|ref|YP_004595283.1| - 0.0078 16.2 0.1 3.3 7.7 0.0 2.9 2 2 0 2 2 2 0 Type III restriction enzyme, res subunit AFG1_ATPase PF03969.16 gi|336252176|ref|YP_004595283.1| - 0.0078 15.1 0.0 2.9 6.7 0.0 2.5 2 0 0 2 2 2 1 AFG1-like ATPase Zot PF05707.12 gi|336252176|ref|YP_004595283.1| - 0.012 15.3 0.0 0.58 9.8 0.0 2.6 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) Cytidylate_kin PF02224.18 gi|336252176|ref|YP_004595283.1| - 0.025 14.3 0.1 10 5.8 0.0 2.9 3 0 0 3 3 3 0 Cytidylate kinase HJURP_C PF12347.8 gi|336252176|ref|YP_004595283.1| - 0.029 14.4 0.3 0.068 13.2 0.3 1.6 1 0 0 1 1 1 0 Holliday junction regulator protein family C-terminal repeat TniB PF05621.11 gi|336252176|ref|YP_004595283.1| - 0.043 13.2 0.1 20 4.5 0.0 3.5 2 2 2 4 4 4 0 Bacterial TniB protein Torsin PF06309.11 gi|336252176|ref|YP_004595283.1| - 0.086 12.9 0.0 5.9 7.0 0.0 2.5 2 0 0 2 2 2 0 Torsin cobW PF02492.19 gi|336252176|ref|YP_004595283.1| - 0.093 12.3 0.1 56 3.3 0.0 3.3 3 0 0 3 3 3 0 CobW/HypB/UreG, nucleotide-binding domain DnaG_DnaB_bind PF08278.11 gi|336252176|ref|YP_004595283.1| - 0.1 13.2 0.0 22 5.7 0.0 3.0 2 1 0 2 2 2 0 DNA primase DnaG DnaB-binding AAA_29 PF13555.6 gi|336252176|ref|YP_004595283.1| - 0.12 12.1 0.0 22 4.9 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain PIF1 PF05970.14 gi|336252176|ref|YP_004595283.1| - 0.15 11.2 0.0 8 5.5 0.0 2.5 3 0 0 3 3 2 0 PIF1-like helicase Viral_helicase1 PF01443.18 gi|336252176|ref|YP_004595283.1| - 0.21 11.3 0.0 16 5.2 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase COOH-NH2_lig PF14395.6 gi|336252176|ref|YP_004595283.1| - 0.37 10.0 1.1 6.7 5.8 0.0 2.6 3 0 0 3 3 3 0 Phage phiEco32-like COOH.NH2 ligase-type 2 HMA PF00403.26 gi|336252177|ref|YP_004595284.1| - 0.12 12.9 1.5 0.15 12.5 0.9 1.6 1 1 1 2 2 2 0 Heavy-metal-associated domain TatD_DNase PF01026.21 gi|336252178|ref|YP_004595285.1| - 6.3e-17 61.8 0.1 2.4e-14 53.3 0.0 2.0 1 1 1 2 2 2 2 TatD related DNase DUF2150 PF09920.9 gi|336252179|ref|YP_004595286.1| - 8.6e-72 241.1 7.8 9.8e-72 240.9 7.8 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2150) zf-HC2 PF13490.6 gi|336252179|ref|YP_004595286.1| - 9.6 6.5 6.8 2.1 8.7 0.2 3.0 3 0 0 3 3 3 0 Putative zinc-finger HMG_CoA_synt_N PF01154.17 gi|336252181|ref|YP_004595288.1| - 1e-26 93.9 0.0 1.7e-26 93.2 0.0 1.4 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal HMG_CoA_synt_C PF08540.10 gi|336252181|ref|YP_004595288.1| - 2.4e-24 86.4 0.0 3.9e-24 85.8 0.0 1.2 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase C terminal ACP_syn_III PF08545.10 gi|336252181|ref|YP_004595288.1| - 0.069 13.0 0.2 0.16 11.8 0.2 1.5 1 0 0 1 1 1 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III MAF_flag10 PF01973.18 gi|336252181|ref|YP_004595288.1| - 0.098 12.4 0.0 1 9.0 0.0 2.1 1 1 1 2 2 2 0 Protein of unknown function DUF115 DsbD_2 PF13386.6 gi|336252183|ref|YP_004595290.1| - 5.6e-51 173.3 12.8 6.8e-51 173.1 12.8 1.1 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region PIRT PF15099.6 gi|336252183|ref|YP_004595290.1| - 0.17 11.4 1.5 0.28 10.8 0.3 1.9 2 0 0 2 2 2 0 Phosphoinositide-interacting protein family E1-E2_ATPase PF00122.20 gi|336252184|ref|YP_004595291.1| - 4.2e-43 147.0 4.6 4.2e-43 147.0 4.6 2.6 3 0 0 3 3 3 1 E1-E2 ATPase Hydrolase PF00702.26 gi|336252184|ref|YP_004595291.1| - 4.7e-33 115.3 8.7 8.9e-33 114.3 8.7 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|336252184|ref|YP_004595291.1| - 4.6e-12 46.2 0.0 2.3e-11 44.0 0.0 2.3 1 0 0 1 1 1 1 Heavy-metal-associated domain Hydrolase_3 PF08282.12 gi|336252184|ref|YP_004595291.1| - 0.0042 16.9 0.8 0.008 15.9 0.8 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase ATPase-cat_bd PF12156.8 gi|336252184|ref|YP_004595291.1| - 0.0067 17.1 0.9 0.013 16.2 0.2 1.8 1 1 0 1 1 1 1 Putative metal-binding domain of cation transport ATPase DUF5612 PF18462.1 gi|336252184|ref|YP_004595291.1| - 0.029 14.2 2.3 0.11 12.3 2.3 2.1 1 0 0 1 1 1 0 Domain of unknown function (DUF5612) AI-2E_transport PF01594.16 gi|336252185|ref|YP_004595292.1| - 5e-34 117.9 32.3 6.5e-34 117.6 32.3 1.1 1 0 0 1 1 1 1 AI-2E family transporter DUF2270 PF10028.9 gi|336252186|ref|YP_004595293.1| - 1.9e-68 229.7 1.7 2.2e-68 229.5 1.7 1.0 1 0 0 1 1 1 1 Predicted integral membrane protein (DUF2270) DUF998 PF06197.13 gi|336252186|ref|YP_004595293.1| - 0.011 15.3 3.8 0.015 14.9 0.9 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF998) CPP1-like PF11833.8 gi|336252186|ref|YP_004595293.1| - 0.12 12.0 0.0 0.23 11.1 0.0 1.5 1 0 0 1 1 1 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like DUF2516 PF10724.9 gi|336252186|ref|YP_004595293.1| - 0.13 12.5 0.1 0.13 12.5 0.1 1.8 2 1 0 2 2 2 0 Protein of unknown function (DUF2516) FtsK_4TM PF13491.6 gi|336252186|ref|YP_004595293.1| - 0.21 11.3 0.1 0.21 11.3 0.1 2.2 2 1 0 2 2 2 0 4TM region of DNA translocase FtsK/SpoIIIE DUF4131 PF13567.6 gi|336252186|ref|YP_004595293.1| - 0.41 10.3 6.6 6.2 6.4 3.2 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) Trp_oprn_chp PF09534.10 gi|336252186|ref|YP_004595293.1| - 0.41 10.4 3.2 1.1 9.0 1.1 2.2 2 1 0 2 2 2 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) DUF4199 PF13858.6 gi|336252186|ref|YP_004595293.1| - 3.6 8.0 6.7 18 5.7 0.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4199) GDC-P PF02347.16 gi|336252187|ref|YP_004595294.1| - 1.2e-98 330.7 0.0 1.5e-98 330.5 0.0 1.0 1 0 0 1 1 1 1 Glycine cleavage system P-protein Aminotran_5 PF00266.19 gi|336252187|ref|YP_004595294.1| - 0.00043 19.3 0.0 0.00068 18.7 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|336252187|ref|YP_004595294.1| - 0.037 12.6 0.0 0.051 12.1 0.0 1.2 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.19 gi|336252188|ref|YP_004595295.1| - 6.3e-10 38.6 0.0 9.4e-10 38.0 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|336252188|ref|YP_004595295.1| - 5.7e-05 22.5 0.0 9.3e-05 21.8 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase GDC-P PF02347.16 gi|336252188|ref|YP_004595295.1| - 5.8e-05 22.1 0.0 0.0016 17.4 0.0 2.1 2 0 0 2 2 2 1 Glycine cleavage system P-protein Cys_Met_Meta_PP PF01053.20 gi|336252188|ref|YP_004595295.1| - 0.21 10.1 0.0 0.35 9.3 0.0 1.2 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme zf-H2C2_2 PF13465.6 gi|336252189|ref|YP_004595296.1| - 4.9e-05 23.6 2.8 0.013 15.9 0.3 2.1 2 0 0 2 2 2 2 Zinc-finger double domain Rubredoxin PF00301.20 gi|336252189|ref|YP_004595296.1| - 0.00034 20.6 1.3 0.47 10.5 0.2 2.2 2 0 0 2 2 2 2 Rubredoxin zf-C2H2 PF00096.26 gi|336252189|ref|YP_004595296.1| - 0.00071 19.9 2.2 0.17 12.4 0.1 2.2 2 0 0 2 2 2 2 Zinc finger, C2H2 type Zn_Tnp_IS1595 PF12760.7 gi|336252189|ref|YP_004595296.1| - 0.00087 19.2 0.7 0.0013 18.7 0.7 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain zinc_ribbon_9 PF14369.6 gi|336252189|ref|YP_004595296.1| - 0.0015 18.7 0.3 0.12 12.6 0.0 2.2 2 0 0 2 2 2 1 zinc-ribbon Lar_restr_allev PF14354.6 gi|336252189|ref|YP_004595296.1| - 0.0027 18.1 0.8 0.0034 17.7 0.8 1.1 1 0 0 1 1 1 1 Restriction alleviation protein Lar zf-ribbon_3 PF13248.6 gi|336252189|ref|YP_004595296.1| - 0.009 15.4 3.0 0.39 10.2 0.5 2.2 2 0 0 2 2 2 1 zinc-ribbon domain DUF983 PF06170.12 gi|336252189|ref|YP_004595296.1| - 0.012 16.1 2.2 0.23 11.9 0.2 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF983) Zn_ribbon_SprT PF17283.2 gi|336252189|ref|YP_004595296.1| - 0.017 15.0 2.4 1.1 9.2 0.3 2.1 2 0 0 2 2 2 0 SprT-like zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|336252189|ref|YP_004595296.1| - 0.02 14.4 1.1 0.15 11.6 0.1 2.1 2 0 0 2 2 2 0 TFIIB zinc-binding zf_Rg PF17915.1 gi|336252189|ref|YP_004595296.1| - 0.026 13.9 0.2 0.32 10.4 0.0 2.0 2 0 0 2 2 2 0 Reverse gyrase zinc finger TFIIS_C PF01096.18 gi|336252189|ref|YP_004595296.1| - 0.028 14.3 2.4 0.098 12.5 0.2 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Rubredoxin_2 PF18073.1 gi|336252189|ref|YP_004595296.1| - 0.029 14.1 3.5 0.94 9.3 0.2 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain zf-LITAF-like PF10601.9 gi|336252189|ref|YP_004595296.1| - 0.032 14.5 0.8 0.69 10.2 0.1 2.1 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain DUF1272 PF06906.11 gi|336252189|ref|YP_004595296.1| - 0.037 14.1 2.2 1.7 8.8 0.5 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1272) Ribosomal_S27e PF01667.17 gi|336252189|ref|YP_004595296.1| - 0.052 13.3 1.1 0.45 10.2 0.0 2.0 1 1 1 2 2 2 0 Ribosomal protein S27 DUF3268 PF11672.8 gi|336252189|ref|YP_004595296.1| - 0.056 13.8 0.2 0.059 13.7 0.2 1.1 1 0 0 1 1 1 0 zinc-finger-containing domain DUF1610 PF07754.11 gi|336252189|ref|YP_004595296.1| - 0.12 12.3 2.3 0.12 12.3 2.3 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) HypA PF01155.19 gi|336252189|ref|YP_004595296.1| - 0.12 12.4 0.4 0.18 11.8 0.4 1.4 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ISL3 PF14690.6 gi|336252189|ref|YP_004595296.1| - 0.13 12.9 4.3 0.94 10.2 0.2 2.1 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 CpXC PF14353.6 gi|336252189|ref|YP_004595296.1| - 0.15 12.1 2.5 12 5.9 2.5 2.1 1 1 0 1 1 1 0 CpXC protein DNA_ligase_ZBD PF03119.16 gi|336252189|ref|YP_004595296.1| - 0.2 11.7 3.3 6.2 6.9 0.1 2.2 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Zn-ribbon_8 PF09723.10 gi|336252189|ref|YP_004595296.1| - 0.36 11.0 4.6 2.7 8.2 0.7 2.1 1 1 1 2 2 2 0 Zinc ribbon domain zinc_ribbon_5 PF13719.6 gi|336252189|ref|YP_004595296.1| - 0.4 10.5 3.0 4.9 7.0 0.3 2.2 1 1 1 2 2 2 0 zinc-ribbon domain DUF3797 PF12677.7 gi|336252189|ref|YP_004595296.1| - 1 9.3 5.8 16 5.4 2.0 2.7 1 1 2 3 3 3 0 Domain of unknown function (DUF3797) Cob_adeno_trans PF01923.18 gi|336252190|ref|YP_004595297.1| - 7.2e-57 192.1 0.0 8.1e-57 191.9 0.0 1.0 1 0 0 1 1 1 1 Cobalamin adenosyltransferase ABATE PF07336.11 gi|336252190|ref|YP_004595297.1| - 0.19 12.4 7.4 0.57 10.9 7.3 1.8 1 1 0 1 1 1 0 Putative stress-induced transcription regulator HTH_20 PF12840.7 gi|336252191|ref|YP_004595298.1| - 0.00011 22.2 0.9 0.00068 19.6 0.9 2.0 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_10 PF04967.12 gi|336252192|ref|YP_004595299.1| - 9.9e-17 60.5 0.0 1.7e-16 59.7 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|336252192|ref|YP_004595299.1| - 5.1e-12 45.9 3.1 8.1e-12 45.3 3.1 1.3 1 0 0 1 1 1 1 GAF and HTH_10 associated domain Sigma70_r4 PF04545.16 gi|336252192|ref|YP_004595299.1| - 8.7e-05 22.0 0.3 0.00017 21.0 0.3 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_24 PF13412.6 gi|336252192|ref|YP_004595299.1| - 0.00029 20.3 0.5 0.00087 18.8 0.2 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|336252192|ref|YP_004595299.1| - 0.00095 19.0 0.0 0.0026 17.6 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_AsnC-type PF13404.6 gi|336252192|ref|YP_004595299.1| - 0.0026 17.5 0.9 0.0026 17.5 0.9 2.1 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|336252192|ref|YP_004595299.1| - 0.016 14.8 0.2 0.15 11.8 0.2 2.4 1 1 0 1 1 1 0 Sigma-70, region 4 HTH_Crp_2 PF13545.6 gi|336252192|ref|YP_004595299.1| - 0.017 15.1 0.0 0.13 12.3 0.0 2.3 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_3 PF01381.22 gi|336252192|ref|YP_004595299.1| - 0.11 12.6 0.3 0.46 10.6 0.1 2.2 2 1 1 3 3 3 0 Helix-turn-helix Apolipoprotein PF01442.18 gi|336252193|ref|YP_004595300.1| - 0.011 15.7 2.4 0.047 13.6 1.7 1.9 1 1 1 2 2 2 0 Apolipoprotein A1/A4/E domain DUF883 PF05957.13 gi|336252193|ref|YP_004595300.1| - 0.15 12.6 2.9 0.42 11.2 0.7 2.0 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) Exotox-A_target PF09102.10 gi|336252193|ref|YP_004595300.1| - 0.16 12.0 2.0 0.26 11.3 1.5 1.5 1 1 0 1 1 1 0 Exotoxin A, targeting DUF1490 PF07371.12 gi|336252193|ref|YP_004595300.1| - 0.35 11.0 3.8 0.67 10.1 0.2 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1490) Sensor PF13796.6 gi|336252194|ref|YP_004595301.1| - 0.0082 16.2 8.5 0.17 11.9 1.5 2.3 2 0 0 2 2 2 2 Putative sensor RVT_3 PF13456.6 gi|336252198|ref|YP_004595305.1| - 1.5e-26 92.6 0.0 2.1e-26 92.1 0.0 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like RNase_H PF00075.24 gi|336252198|ref|YP_004595305.1| - 2.5e-11 43.9 0.0 7.5e-11 42.4 0.0 1.8 1 1 0 1 1 1 1 RNase H Radical_SAM PF04055.21 gi|336252198|ref|YP_004595305.1| - 0.074 13.4 0.0 0.13 12.6 0.0 1.4 1 1 0 1 1 1 0 Radical SAM superfamily TFIIB PF00382.19 gi|336252199|ref|YP_004595306.1| - 9.6e-47 156.9 2.9 8.4e-26 89.8 0.2 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|336252199|ref|YP_004595306.1| - 4.3e-19 67.7 3.4 8.6e-19 66.8 3.4 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding A2L_zn_ribbon PF08792.10 gi|336252199|ref|YP_004595306.1| - 0.0036 17.0 0.5 0.0082 15.8 0.5 1.6 1 0 0 1 1 1 1 A2L zinc ribbon domain HARE-HTH PF05066.13 gi|336252199|ref|YP_004595306.1| - 0.011 16.1 0.1 0.52 10.7 0.1 2.4 2 0 0 2 2 2 0 HB1, ASXL, restriction endonuclease HTH domain PhnA_Zn_Ribbon PF08274.12 gi|336252199|ref|YP_004595306.1| - 0.039 13.9 2.1 0.084 12.8 2.1 1.5 1 0 0 1 1 1 0 PhnA Zinc-Ribbon Cyclin_C PF02984.19 gi|336252199|ref|YP_004595306.1| - 0.058 13.5 0.0 0.56 10.3 0.0 2.1 2 0 0 2 2 2 0 Cyclin, C-terminal domain Sigma70_r4 PF04545.16 gi|336252199|ref|YP_004595306.1| - 0.076 12.5 2.9 0.37 10.3 0.1 3.4 3 1 1 4 4 4 0 Sigma-70, region 4 RB_B PF01857.20 gi|336252199|ref|YP_004595306.1| - 0.078 13.0 0.0 1.7 8.6 0.0 2.3 2 0 0 2 2 2 0 Retinoblastoma-associated protein B domain Zn_Tnp_IS1595 PF12760.7 gi|336252199|ref|YP_004595306.1| - 0.079 13.0 0.1 0.18 11.8 0.1 1.6 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Lar_restr_allev PF14354.6 gi|336252199|ref|YP_004595306.1| - 0.095 13.1 1.3 0.17 12.3 0.4 1.9 2 0 0 2 2 2 0 Restriction alleviation protein Lar HTH_23 PF13384.6 gi|336252199|ref|YP_004595306.1| - 0.096 12.5 0.8 0.7 9.8 0.1 2.8 3 0 0 3 3 3 0 Homeodomain-like domain RPA_interact_C PF14768.6 gi|336252199|ref|YP_004595306.1| - 0.12 12.9 0.0 0.29 11.7 0.0 1.8 1 0 0 1 1 1 0 Replication protein A interacting C-terminal Zn-ribbon_8 PF09723.10 gi|336252199|ref|YP_004595306.1| - 0.87 9.8 3.4 6.6 6.9 0.4 2.5 1 1 0 2 2 2 0 Zinc ribbon domain Pribosyltran PF00156.27 gi|336252200|ref|YP_004595307.1| - 3e-15 56.1 0.0 5.3e-15 55.3 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain HTH_23 PF13384.6 gi|336252200|ref|YP_004595307.1| - 0.00014 21.5 0.0 0.0023 17.6 0.0 2.2 2 0 0 2 2 2 1 Homeodomain-like domain HTH_7 PF02796.15 gi|336252200|ref|YP_004595307.1| - 0.0026 17.8 0.0 0.0056 16.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_38 PF13936.6 gi|336252200|ref|YP_004595307.1| - 0.011 15.5 0.3 0.38 10.6 0.0 2.9 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_11 PF08279.12 gi|336252200|ref|YP_004595307.1| - 0.012 15.5 0.2 0.091 12.7 0.1 2.3 2 0 0 2 2 2 0 HTH domain Sigma70_r4 PF04545.16 gi|336252200|ref|YP_004595307.1| - 0.024 14.1 0.1 0.048 13.2 0.1 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_24 PF13412.6 gi|336252200|ref|YP_004595307.1| - 0.027 14.0 0.0 0.11 12.1 0.0 2.0 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|336252200|ref|YP_004595307.1| - 0.053 13.4 0.0 0.31 11.0 0.0 2.1 2 0 0 2 2 2 0 MarR family PRTase_2 PF15609.6 gi|336252200|ref|YP_004595307.1| - 0.074 12.5 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 Phosphoribosyl transferase GerE PF00196.19 gi|336252200|ref|YP_004595307.1| - 0.12 12.0 0.0 0.26 10.8 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family UPRTase PF14681.6 gi|336252200|ref|YP_004595307.1| - 0.15 11.5 0.0 0.22 10.9 0.0 1.2 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase CENP-B_N PF04218.13 gi|336252200|ref|YP_004595307.1| - 0.16 11.6 0.2 0.5 10.0 0.0 1.8 2 0 0 2 2 2 0 CENP-B N-terminal DNA-binding domain HTH_Crp_2 PF13545.6 gi|336252200|ref|YP_004595307.1| - 0.16 11.9 0.0 0.38 10.7 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_3 PF01381.22 gi|336252200|ref|YP_004595307.1| - 0.17 12.0 0.1 0.64 10.1 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix Hydrolase_3 PF08282.12 gi|336252201|ref|YP_004595308.1| - 2.2e-11 44.0 0.0 9.4e-05 22.3 0.0 2.2 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|336252201|ref|YP_004595308.1| - 0.0019 18.6 4.2 2.1 8.7 0.1 3.6 2 1 1 3 3 3 2 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|336252201|ref|YP_004595308.1| - 0.0089 16.3 0.1 0.032 14.5 0.1 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HTH_10 PF04967.12 gi|336252202|ref|YP_004595309.1| - 4.9e-19 67.9 0.2 8.6e-19 67.1 0.2 1.4 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|336252202|ref|YP_004595309.1| - 3.4e-08 33.5 7.6 5.5e-08 32.8 7.6 1.4 1 0 0 1 1 1 1 GAF and HTH_10 associated domain UPF0122 PF04297.14 gi|336252202|ref|YP_004595309.1| - 0.0014 18.8 0.0 0.0031 17.7 0.0 1.5 1 0 0 1 1 1 1 Putative helix-turn-helix protein, YlxM / p13 like Sigma70_r4 PF04545.16 gi|336252202|ref|YP_004595309.1| - 0.0022 17.5 0.3 0.0056 16.2 0.3 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 MarR_2 PF12802.7 gi|336252202|ref|YP_004595309.1| - 0.021 14.7 0.2 0.07 13.0 0.0 2.0 2 0 0 2 2 2 0 MarR family HTH_30 PF13556.6 gi|336252202|ref|YP_004595309.1| - 0.021 14.6 0.1 0.31 10.9 0.1 2.6 3 0 0 3 3 3 0 PucR C-terminal helix-turn-helix domain HTH_24 PF13412.6 gi|336252202|ref|YP_004595309.1| - 0.022 14.3 0.2 0.051 13.1 0.1 1.7 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Sigma70_r3 PF04539.16 gi|336252202|ref|YP_004595309.1| - 0.028 14.5 1.1 0.028 14.5 1.1 2.0 2 0 0 2 2 2 0 Sigma-70 region 3 HTH_11 PF08279.12 gi|336252202|ref|YP_004595309.1| - 0.053 13.5 0.1 0.69 9.9 0.0 2.5 2 0 0 2 2 2 0 HTH domain HTH_20 PF12840.7 gi|336252202|ref|YP_004595309.1| - 0.065 13.3 0.3 0.24 11.5 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain DUF4250 PF14056.6 gi|336252202|ref|YP_004595309.1| - 0.18 11.8 0.4 0.88 9.6 0.1 2.3 3 0 0 3 3 3 0 Domain of unknown function (DUF4250) HAD_2 PF13419.6 gi|336252203|ref|YP_004595310.1| - 1.2e-20 74.3 0.0 4.3e-19 69.3 0.0 2.1 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|336252203|ref|YP_004595310.1| - 8.7e-12 45.8 1.6 2.3e-08 34.6 0.2 2.2 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|336252203|ref|YP_004595310.1| - 7.8e-07 29.7 0.5 1.1e-06 29.3 0.5 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|336252203|ref|YP_004595310.1| - 1.2e-06 28.5 0.0 2.6e-06 27.4 0.0 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like Acid_PPase PF12689.7 gi|336252203|ref|YP_004595310.1| - 0.03 14.2 0.0 0.28 11.0 0.0 2.1 1 1 0 1 1 1 0 Acid Phosphatase Pantoate_transf PF02548.15 gi|336252205|ref|YP_004595312.1| - 3.5e-104 347.8 0.9 4.3e-104 347.5 0.9 1.0 1 0 0 1 1 1 1 Ketopantoate hydroxymethyltransferase PEP_mutase PF13714.6 gi|336252205|ref|YP_004595312.1| - 9.4e-06 25.2 1.8 1.4e-05 24.6 1.6 1.4 1 1 0 1 1 1 1 Phosphoenolpyruvate phosphomutase DUF2244 PF10003.9 gi|336252206|ref|YP_004595313.1| - 0.04 13.6 1.7 0.046 13.4 1.7 1.0 1 0 0 1 1 1 0 Integral membrane protein (DUF2244) Tetraspanin PF00335.20 gi|336252206|ref|YP_004595313.1| - 0.089 12.5 1.3 0.12 12.1 1.3 1.3 1 0 0 1 1 1 0 Tetraspanin family DUF4342 PF14242.6 gi|336252206|ref|YP_004595313.1| - 3.7 7.6 6.6 7 6.7 2.5 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4342) UbiA PF01040.18 gi|336252207|ref|YP_004595314.1| - 0.001 18.4 0.8 0.0012 18.2 0.8 1.0 1 0 0 1 1 1 1 UbiA prenyltransferase family Phage_holin_3_6 PF07332.11 gi|336252207|ref|YP_004595314.1| - 0.034 14.2 1.2 0.052 13.6 1.2 1.3 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III Abhydrolase_6 PF12697.7 gi|336252208|ref|YP_004595315.1| - 9.1e-20 72.2 9.1 1.1e-19 71.9 9.1 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|336252208|ref|YP_004595315.1| - 5.5e-14 52.4 1.1 1.5e-07 31.3 0.4 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|336252208|ref|YP_004595315.1| - 3.1e-12 46.3 0.7 6.6e-12 45.2 0.7 1.5 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_4 PF08386.10 gi|336252208|ref|YP_004595315.1| - 0.00027 21.0 0.0 0.00063 19.8 0.0 1.7 1 0 0 1 1 1 1 TAP-like protein Esterase PF00756.20 gi|336252208|ref|YP_004595315.1| - 0.036 13.7 0.0 0.079 12.6 0.0 1.7 1 1 0 1 1 1 0 Putative esterase NitrOD2 PF18550.1 gi|336252208|ref|YP_004595315.1| - 0.065 13.4 0.0 0.12 12.5 0.0 1.6 1 0 0 1 1 1 0 Nitrososphaera output domain 2 Thioesterase PF00975.20 gi|336252208|ref|YP_004595315.1| - 0.082 13.0 0.0 0.15 12.2 0.0 1.4 1 0 0 1 1 1 0 Thioesterase domain FAD_binding_4 PF01565.23 gi|336252208|ref|YP_004595315.1| - 0.083 12.6 0.2 0.47 10.2 0.1 1.9 1 1 1 2 2 2 0 FAD binding domain NYN PF01936.18 gi|336252209|ref|YP_004595316.1| - 1.9e-18 67.3 0.0 2.2e-18 67.1 0.0 1.0 1 0 0 1 1 1 1 NYN domain CoA_binding_2 PF13380.6 gi|336252209|ref|YP_004595316.1| - 0.06 13.8 0.1 4.9 7.7 0.0 2.0 1 1 1 2 2 2 0 CoA binding domain ADH_zinc_N PF00107.26 gi|336252209|ref|YP_004595316.1| - 0.13 12.3 0.3 0.26 11.2 0.3 1.6 1 1 0 1 1 1 0 Zinc-binding dehydrogenase Peptidase_S8 PF00082.22 gi|336252210|ref|YP_004595317.1| - 1.6e-48 165.5 11.7 2.6e-48 164.8 11.7 1.3 1 0 0 1 1 1 1 Subtilase family GCV_T PF01571.21 gi|336252211|ref|YP_004595318.1| - 1e-80 270.9 0.0 1.3e-80 270.5 0.0 1.2 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.11 gi|336252211|ref|YP_004595318.1| - 1.5e-21 76.1 0.1 3e-21 75.1 0.1 1.5 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain SoxG PF04268.12 gi|336252211|ref|YP_004595318.1| - 0.16 12.1 0.4 3.8 7.7 0.1 2.2 2 0 0 2 2 2 0 Sarcosine oxidase, gamma subunit family GCV_H PF01597.19 gi|336252212|ref|YP_004595319.1| - 6.1e-44 148.8 0.0 6.7e-44 148.7 0.0 1.0 1 0 0 1 1 1 1 Glycine cleavage H-protein Biotin_lipoyl PF00364.22 gi|336252212|ref|YP_004595319.1| - 0.0071 16.1 0.2 0.013 15.3 0.2 1.4 1 0 0 1 1 1 1 Biotin-requiring enzyme RnfC_N PF13375.6 gi|336252212|ref|YP_004595319.1| - 0.16 12.0 0.0 0.23 11.5 0.0 1.2 1 0 0 1 1 1 0 RnfC Barrel sandwich hybrid domain GIDE PF12483.8 gi|336252213|ref|YP_004595320.1| - 4.1e-10 39.3 0.0 7.2e-10 38.5 0.0 1.3 1 0 0 1 1 1 1 E3 Ubiquitin ligase HTH_31 PF13560.6 gi|336252215|ref|YP_004595322.1| - 1.6e-09 38.0 0.2 3.9e-09 36.7 0.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|336252215|ref|YP_004595322.1| - 1.2e-08 34.8 0.0 3.3e-08 33.4 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix HTH_19 PF12844.7 gi|336252215|ref|YP_004595322.1| - 3.1e-06 27.1 0.0 7.8e-06 25.8 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|336252215|ref|YP_004595322.1| - 0.024 14.2 0.0 0.12 11.9 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|336252215|ref|YP_004595322.1| - 0.032 14.1 0.0 0.08 12.8 0.0 1.7 1 0 0 1 1 1 0 MarR family HTH_11 PF08279.12 gi|336252215|ref|YP_004595322.1| - 0.067 13.2 0.0 0.19 11.7 0.0 1.8 1 0 0 1 1 1 0 HTH domain YdaS_antitoxin PF15943.5 gi|336252215|ref|YP_004595322.1| - 0.07 13.0 0.0 0.17 11.7 0.0 1.6 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_26 PF13443.6 gi|336252215|ref|YP_004595322.1| - 0.085 13.3 0.0 0.21 12.1 0.0 1.7 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain MoCF_biosynth PF00994.24 gi|336252216|ref|YP_004595323.1| - 1.6e-29 102.4 0.1 2.5e-29 101.8 0.1 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain DUF5132 PF17195.4 gi|336252216|ref|YP_004595323.1| - 6.3 7.0 7.7 15 5.8 0.9 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF5132) SBP_bac_8 PF13416.6 gi|336252217|ref|YP_004595324.1| - 2.1e-15 57.3 0.1 2.8e-15 56.9 0.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|336252217|ref|YP_004595324.1| - 1.2e-13 51.1 0.0 1.7e-13 50.6 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|336252217|ref|YP_004595324.1| - 8.1e-11 42.4 0.2 1.2e-10 41.9 0.2 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|336252217|ref|YP_004595324.1| - 4.5e-08 33.1 0.0 6.9e-08 32.5 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein ABC_tran PF00005.27 gi|336252218|ref|YP_004595325.1| - 1.4e-34 119.5 0.0 2.6e-34 118.7 0.0 1.4 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 gi|336252218|ref|YP_004595325.1| - 1.8e-15 56.8 2.3 1.6e-14 53.8 0.2 3.0 1 1 1 2 2 2 2 TOBE domain AAA_21 PF13304.6 gi|336252218|ref|YP_004595325.1| - 2.2e-07 31.0 0.2 0.0015 18.4 0.0 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|336252218|ref|YP_004595325.1| - 0.0056 17.1 0.1 0.0099 16.3 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|336252218|ref|YP_004595325.1| - 0.0057 16.9 0.8 0.028 14.7 0.7 2.0 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|336252218|ref|YP_004595325.1| - 0.0059 16.1 0.0 0.34 10.3 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|336252218|ref|YP_004595325.1| - 0.012 15.5 0.0 0.022 14.6 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_29 PF13555.6 gi|336252218|ref|YP_004595325.1| - 0.015 15.1 0.0 0.035 13.8 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain G-alpha PF00503.20 gi|336252218|ref|YP_004595325.1| - 0.028 13.6 0.0 0.033 13.4 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit AAA_30 PF13604.6 gi|336252218|ref|YP_004595325.1| - 0.059 13.1 0.4 0.2 11.4 0.0 2.0 3 0 0 3 3 3 0 AAA domain AAA_24 PF13479.6 gi|336252218|ref|YP_004595325.1| - 0.094 12.4 0.0 0.16 11.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|336252218|ref|YP_004595325.1| - 0.098 12.8 0.1 0.21 11.8 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|336252218|ref|YP_004595325.1| - 0.11 13.1 0.1 0.31 11.6 0.1 2.1 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|336252218|ref|YP_004595325.1| - 0.11 12.9 1.0 1.3 9.5 1.0 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.15 gi|336252218|ref|YP_004595325.1| - 0.18 11.7 0.1 0.31 11.0 0.1 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain BPD_transp_1 PF00528.22 gi|336252219|ref|YP_004595326.1| - 1.1e-13 51.3 15.7 1.1e-13 51.3 15.7 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|336252220|ref|YP_004595327.1| - 1.6e-16 60.6 15.9 1.6e-16 60.6 15.9 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF3439 PF11921.8 gi|336252220|ref|YP_004595327.1| - 0.042 13.8 0.3 0.092 12.7 0.3 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF3439) DUF1129 PF06570.11 gi|336252220|ref|YP_004595327.1| - 0.64 9.5 4.4 1 8.8 0.1 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF1129) EamA PF00892.20 gi|336252221|ref|YP_004595328.1| - 7.5e-07 29.4 22.8 8.3e-07 29.2 22.8 1.0 1 0 0 1 1 1 1 EamA-like transporter family TMEM234 PF10639.9 gi|336252221|ref|YP_004595328.1| - 0.017 15.1 4.0 0.017 15.1 4.0 1.4 1 1 0 1 1 1 0 Putative transmembrane family 234 PNTB_4TM PF12769.7 gi|336252221|ref|YP_004595328.1| - 0.99 9.9 14.5 6.4 7.3 0.3 3.3 2 1 1 3 3 3 0 4TM region of pyridine nucleotide transhydrogenase, mitoch ABC2_membrane_5 PF13346.6 gi|336252221|ref|YP_004595328.1| - 2.3 7.7 11.5 1.5 8.4 10.2 1.4 1 1 0 1 1 1 0 ABC-2 family transporter protein KH_7 PF17214.3 gi|336252222|ref|YP_004595329.1| - 3.7e-33 113.3 1.0 2.2e-29 101.2 0.1 2.9 3 0 0 3 3 3 2 KH domain Beta-Casp PF10996.8 gi|336252222|ref|YP_004595329.1| - 5.4e-22 78.2 0.0 1.2e-21 77.0 0.0 1.6 1 0 0 1 1 1 1 Beta-Casp domain RMMBL PF07521.12 gi|336252222|ref|YP_004595329.1| - 7.2e-17 61.1 0.0 1.9e-16 59.7 0.0 1.8 1 0 0 1 1 1 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B PF00753.27 gi|336252222|ref|YP_004595329.1| - 1.6e-14 54.3 3.1 5.8e-14 52.6 3.1 1.9 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_6 PF16661.5 gi|336252222|ref|YP_004595329.1| - 1.9e-12 47.0 0.0 3.4e-12 46.2 0.0 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|336252222|ref|YP_004595329.1| - 1.4e-09 37.7 0.1 2.6e-09 36.9 0.1 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain KH_2 PF07650.17 gi|336252222|ref|YP_004595329.1| - 1.7e-07 31.0 0.1 1.6e-06 27.9 0.0 2.3 2 0 0 2 2 2 1 KH domain Lactamase_B_3 PF13483.6 gi|336252222|ref|YP_004595329.1| - 6.1e-05 23.0 0.1 0.00023 21.1 0.0 1.8 2 0 0 2 2 2 1 Beta-lactamase superfamily domain KH_4 PF13083.6 gi|336252222|ref|YP_004595329.1| - 0.059 13.3 0.1 0.14 12.1 0.1 1.6 1 0 0 1 1 1 0 KH domain KH_1 PF00013.29 gi|336252222|ref|YP_004595329.1| - 0.084 12.7 0.0 0.32 10.9 0.0 2.0 1 0 0 1 1 1 0 KH domain SAICAR_synt PF01259.18 gi|336252224|ref|YP_004595331.1| - 0.043 13.4 0.3 0.055 13.1 0.3 1.1 1 0 0 1 1 1 0 SAICAR synthetase Spt20 PF12090.8 gi|336252224|ref|YP_004595331.1| - 0.15 11.6 12.9 0.24 11.0 12.9 1.3 1 0 0 1 1 1 0 Spt20 family Presenilin PF01080.17 gi|336252224|ref|YP_004595331.1| - 1.8 7.3 6.3 2.1 7.0 6.3 1.1 1 0 0 1 1 1 0 Presenilin TAT_signal PF10518.9 gi|336252224|ref|YP_004595331.1| - 2.6 8.0 8.5 0.15 11.9 2.2 2.0 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence DivIC PF04977.15 gi|336252224|ref|YP_004595331.1| - 7.1 6.5 12.3 1.3 8.9 6.9 2.1 2 0 0 2 2 2 0 Septum formation initiator NucS PF01939.16 gi|336252225|ref|YP_004595332.1| - 7.3e-70 234.9 0.0 8.4e-70 234.7 0.0 1.0 1 0 0 1 1 1 1 Endonuclease NucS YhcG_C PF06250.11 gi|336252225|ref|YP_004595332.1| - 0.0083 16.0 0.0 0.013 15.4 0.0 1.2 1 0 0 1 1 1 1 YhcG PDDEXK nuclease domain PBP PF01161.20 gi|336252226|ref|YP_004595333.1| - 3.1e-33 114.9 0.2 3.6e-33 114.7 0.2 1.0 1 0 0 1 1 1 1 Phosphatidylethanolamine-binding protein Calreticulin PF00262.18 gi|336252226|ref|YP_004595333.1| - 5.5 5.7 8.7 7.2 5.3 8.7 1.2 1 0 0 1 1 1 0 Calreticulin family Acetyltransf_1 PF00583.25 gi|336252227|ref|YP_004595334.1| - 1.7e-15 57.2 0.2 2.3e-15 56.8 0.2 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|336252227|ref|YP_004595334.1| - 2.2e-09 37.3 0.1 4.6e-09 36.3 0.1 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|336252227|ref|YP_004595334.1| - 7.9e-09 35.4 0.1 1.3e-08 34.7 0.1 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_7 PF13508.7 gi|336252227|ref|YP_004595334.1| - 1.4e-08 35.0 0.0 2.2e-08 34.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|336252227|ref|YP_004595334.1| - 0.00027 21.1 0.0 0.00068 19.8 0.0 1.7 1 1 1 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|336252227|ref|YP_004595334.1| - 0.00031 20.8 1.3 0.0019 18.3 1.3 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|336252227|ref|YP_004595334.1| - 0.018 15.1 0.0 0.03 14.4 0.0 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Acetyltransf_8 PF13523.6 gi|336252227|ref|YP_004595334.1| - 0.022 14.4 1.5 0.074 12.7 0.2 2.1 1 1 1 2 2 2 0 Acetyltransferase (GNAT) domain MutS_V PF00488.21 gi|336252228|ref|YP_004595335.1| - 2.1e-78 262.7 0.2 3.2e-78 262.1 0.2 1.3 1 0 0 1 1 1 1 MutS domain V MutS_III PF05192.18 gi|336252228|ref|YP_004595335.1| - 1.6e-41 142.7 3.0 2.9e-41 141.8 3.0 1.4 1 0 0 1 1 1 1 MutS domain III MutS_I PF01624.20 gi|336252228|ref|YP_004595335.1| - 2.9e-36 124.1 0.0 5.8e-36 123.2 0.0 1.5 1 0 0 1 1 1 1 MutS domain I MutS_IV PF05190.18 gi|336252228|ref|YP_004595335.1| - 2e-32 111.4 0.1 5.8e-32 109.9 0.1 1.9 1 0 0 1 1 1 1 MutS family domain IV MutS_II PF05188.17 gi|336252228|ref|YP_004595335.1| - 3.9e-10 40.2 0.0 2.4e-09 37.6 0.0 2.3 3 0 0 3 3 3 1 MutS domain II PLU-1 PF08429.11 gi|336252228|ref|YP_004595335.1| - 0.015 14.5 0.0 0.038 13.2 0.0 1.6 1 1 0 1 1 1 0 PLU-1-like protein AAA_14 PF13173.6 gi|336252228|ref|YP_004595335.1| - 0.029 14.4 0.0 0.12 12.5 0.0 2.0 1 1 0 1 1 1 0 AAA domain AAA_27 PF13514.6 gi|336252228|ref|YP_004595335.1| - 0.082 12.5 0.0 0.18 11.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|336252228|ref|YP_004595335.1| - 0.17 12.3 1.2 0.43 11.1 0.0 2.1 2 1 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|336252228|ref|YP_004595335.1| - 0.2 11.4 0.0 0.55 10.0 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain HTH_20 PF12840.7 gi|336252229|ref|YP_004595336.1| - 1.8e-18 66.4 4.6 9.9e-10 38.3 1.7 2.5 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_5 PF01022.20 gi|336252229|ref|YP_004595336.1| - 4.5e-16 58.4 0.0 4.1e-10 39.4 0.0 2.5 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|336252229|ref|YP_004595336.1| - 2.3e-14 52.7 0.0 2.4e-06 27.0 0.0 2.3 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|336252229|ref|YP_004595336.1| - 2.9e-11 43.1 4.1 1.3e-07 31.3 0.3 2.8 3 0 0 3 3 2 2 MarR family MarR PF01047.22 gi|336252229|ref|YP_004595336.1| - 7.7e-11 41.8 0.0 1.3e-06 28.2 0.0 2.6 2 0 0 2 2 2 2 MarR family HTH_IclR PF09339.10 gi|336252229|ref|YP_004595336.1| - 3.6e-09 36.3 0.1 0.00059 19.6 0.0 2.5 2 0 0 2 2 2 2 IclR helix-turn-helix domain Fe_dep_repress PF01325.19 gi|336252229|ref|YP_004595336.1| - 1.2e-07 31.8 0.0 0.00015 21.9 0.0 2.6 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain Penicillinase_R PF03965.16 gi|336252229|ref|YP_004595336.1| - 4.7e-07 30.2 0.0 0.00068 20.0 0.0 2.4 2 0 0 2 2 2 2 Penicillinase repressor HTH_11 PF08279.12 gi|336252229|ref|YP_004595336.1| - 2.8e-06 27.2 0.0 0.071 13.1 0.0 2.4 2 0 0 2 2 2 2 HTH domain TrmB PF01978.19 gi|336252229|ref|YP_004595336.1| - 9.3e-06 25.4 0.0 0.0017 18.2 0.0 2.4 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|336252229|ref|YP_004595336.1| - 7.2e-05 22.7 0.4 0.0051 16.8 0.0 2.4 1 1 1 2 2 2 1 Crp-like helix-turn-helix domain HTH_12 PF08461.10 gi|336252229|ref|YP_004595336.1| - 0.00022 21.1 0.1 0.63 10.0 0.0 2.6 2 0 0 2 2 2 2 Ribonuclease R winged-helix domain HTH_DeoR PF08220.12 gi|336252229|ref|YP_004595336.1| - 0.00061 19.5 0.1 0.095 12.5 0.0 2.4 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_27 PF13463.6 gi|336252229|ref|YP_004595336.1| - 0.00086 19.8 0.2 0.066 13.7 0.0 2.4 2 0 0 2 2 2 1 Winged helix DNA-binding domain GntR PF00392.21 gi|336252229|ref|YP_004595336.1| - 0.0014 18.2 0.1 1 9.0 0.0 2.5 2 0 0 2 2 2 2 Bacterial regulatory proteins, gntR family HTH_38 PF13936.6 gi|336252229|ref|YP_004595336.1| - 0.0034 17.1 0.0 0.14 12.0 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain RP-C PF03428.13 gi|336252229|ref|YP_004595336.1| - 0.0036 17.0 0.1 1.5 8.5 0.0 2.3 1 1 0 2 2 2 1 Replication protein C N-terminal domain FUR PF01475.19 gi|336252229|ref|YP_004595336.1| - 0.0041 17.3 0.0 0.01 16.0 0.0 1.6 1 0 0 1 1 1 1 Ferric uptake regulator family Rrf2 PF02082.20 gi|336252229|ref|YP_004595336.1| - 0.0046 17.3 0.0 0.92 9.9 0.0 2.4 2 0 0 2 2 2 1 Transcriptional regulator Apolipoprotein PF01442.18 gi|336252229|ref|YP_004595336.1| - 0.0085 16.0 5.5 0.0085 16.0 5.5 1.8 2 0 0 2 2 2 1 Apolipoprotein A1/A4/E domain HTH_29 PF13551.6 gi|336252229|ref|YP_004595336.1| - 0.024 14.7 0.1 10 6.2 0.0 2.6 2 0 0 2 2 2 0 Winged helix-turn helix HTH_1 PF00126.27 gi|336252229|ref|YP_004595336.1| - 0.036 14.0 0.1 1.1 9.3 0.0 3.0 3 0 0 3 3 3 0 Bacterial regulatory helix-turn-helix protein, lysR family B-block_TFIIIC PF04182.12 gi|336252229|ref|YP_004595336.1| - 0.037 14.2 0.0 3.3 7.9 0.0 2.4 2 0 0 2 2 2 0 B-block binding subunit of TFIIIC DUF2250 PF10007.9 gi|336252229|ref|YP_004595336.1| - 0.042 14.0 0.0 7.4 6.8 0.0 2.3 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) LexA_DNA_bind PF01726.16 gi|336252229|ref|YP_004595336.1| - 0.06 13.1 0.0 2.1 8.2 0.0 2.4 2 0 0 2 2 2 0 LexA DNA binding domain MerR_1 PF13411.6 gi|336252229|ref|YP_004595336.1| - 0.071 13.2 0.0 0.88 9.7 0.0 2.2 2 0 0 2 2 2 0 MerR HTH family regulatory protein BLACT_WH PF17778.1 gi|336252229|ref|YP_004595336.1| - 0.082 12.9 6.2 0.48 10.4 0.0 3.3 3 0 0 3 3 3 0 Beta-lactamase associated winged helix domain DUF2300 PF10062.9 gi|336252229|ref|YP_004595336.1| - 0.14 12.2 0.0 0.28 11.3 0.0 1.5 1 0 0 1 1 1 0 Predicted secreted protein (DUF2300) Cdc6_C PF09079.11 gi|336252229|ref|YP_004595336.1| - 0.16 11.9 0.1 23 5.1 0.0 2.4 2 0 0 2 2 2 0 CDC6, C terminal winged helix domain DprA_WH PF17782.1 gi|336252229|ref|YP_004595336.1| - 8.6 6.6 11.9 0.1 12.7 2.0 3.0 4 0 0 4 4 2 0 DprA winged helix domain zf-CHY PF05495.12 gi|336252230|ref|YP_004595337.1| - 7.3e-13 48.8 5.7 1e-12 48.3 5.7 1.2 1 0 0 1 1 1 1 CHY zinc finger C1_2 PF03107.16 gi|336252230|ref|YP_004595337.1| - 0.0019 18.5 0.4 0.0019 18.5 0.4 2.4 1 1 1 2 2 2 1 C1 domain DZR PF12773.7 gi|336252230|ref|YP_004595337.1| - 0.0073 16.3 6.9 0.009 16.0 4.3 2.2 1 1 0 1 1 1 1 Double zinc ribbon HypA PF01155.19 gi|336252230|ref|YP_004595337.1| - 0.1 12.6 0.8 0.1 12.6 0.8 1.8 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-HIT PF04438.16 gi|336252230|ref|YP_004595337.1| - 0.23 11.4 7.8 0.22 11.4 3.6 2.8 2 1 0 2 2 2 0 HIT zinc finger GvpO PF05800.11 gi|336252231|ref|YP_004595338.1| - 1.8e-28 98.4 1.6 4.1e-28 97.2 1.6 1.6 1 0 0 1 1 1 1 Gas vesicle synthesis protein GvpO zf-SAP30 PF13866.6 gi|336252231|ref|YP_004595338.1| - 0.15 12.2 0.4 0.28 11.3 0.4 1.4 1 0 0 1 1 1 0 SAP30 zinc-finger AAA_5 PF07728.14 gi|336252232|ref|YP_004595339.1| - 4.2e-16 59.2 0.0 1.5e-14 54.2 0.0 2.3 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_25 PF13481.6 gi|336252232|ref|YP_004595339.1| - 2.3e-05 24.1 0.3 7.4e-05 22.4 0.3 1.9 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|336252232|ref|YP_004595339.1| - 5.3e-05 23.6 0.0 9.8e-05 22.8 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.17 gi|336252232|ref|YP_004595339.1| - 0.00025 20.8 0.0 0.00048 19.9 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_3 PF07726.11 gi|336252232|ref|YP_004595339.1| - 0.0051 16.7 0.0 0.011 15.6 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) PhoH PF02562.16 gi|336252232|ref|YP_004595339.1| - 0.0065 16.0 0.0 0.015 14.8 0.0 1.6 1 0 0 1 1 1 1 PhoH-like protein Sigma54_activat PF00158.26 gi|336252232|ref|YP_004595339.1| - 0.0077 15.9 0.0 1.3 8.7 0.0 2.2 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_16 PF13191.6 gi|336252232|ref|YP_004595339.1| - 0.027 14.9 0.0 0.058 13.8 0.0 1.6 1 0 0 1 1 1 0 AAA ATPase domain Sigma54_activ_2 PF14532.6 gi|336252232|ref|YP_004595339.1| - 0.03 14.4 0.0 0.068 13.3 0.0 1.6 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_7 PF12775.7 gi|336252232|ref|YP_004595339.1| - 0.034 13.7 0.0 0.059 12.9 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_33 PF13671.6 gi|336252232|ref|YP_004595339.1| - 0.035 14.3 0.0 0.11 12.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain IPT PF01745.16 gi|336252232|ref|YP_004595339.1| - 0.038 13.4 0.0 0.058 12.8 0.0 1.2 1 0 0 1 1 1 0 Isopentenyl transferase Zeta_toxin PF06414.12 gi|336252232|ref|YP_004595339.1| - 0.044 13.1 0.1 0.47 9.7 0.0 2.6 3 0 0 3 3 3 0 Zeta toxin ATPase_2 PF01637.18 gi|336252232|ref|YP_004595339.1| - 0.048 13.6 0.0 0.11 12.4 0.0 1.5 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea ABC_tran PF00005.27 gi|336252232|ref|YP_004595339.1| - 0.12 12.9 0.0 0.19 12.3 0.0 1.6 1 1 0 1 1 1 0 ABC transporter AAA_9 PF12781.7 gi|336252232|ref|YP_004595339.1| - 0.14 11.2 0.0 0.22 10.6 0.0 1.2 1 0 0 1 1 1 0 ATP-binding dynein motor region Gas_vesicle PF00741.18 gi|336252233|ref|YP_004595340.1| - 9.8e-17 60.8 6.7 1.3e-16 60.4 6.7 1.2 1 0 0 1 1 1 1 Gas vesicle protein GvpL_GvpF PF06386.11 gi|336252234|ref|YP_004595341.1| - 7.7e-45 153.7 2.2 1e-25 91.1 0.3 2.0 1 1 1 2 2 2 2 Gas vesicle synthesis protein GvpL/GvpF GvpG PF05120.12 gi|336252235|ref|YP_004595342.1| - 7.6e-06 25.8 2.0 9.2e-06 25.6 2.0 1.1 1 0 0 1 1 1 1 Gas vesicle protein G THOC7 PF05615.13 gi|336252235|ref|YP_004595342.1| - 0.00056 20.2 2.1 0.00064 20.0 2.1 1.1 1 0 0 1 1 1 1 Tho complex subunit 7 HSP20 PF00011.21 gi|336252236|ref|YP_004595343.1| - 0.00037 20.6 0.2 0.13 12.4 0.0 2.4 1 1 1 2 2 2 2 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|336252236|ref|YP_004595343.1| - 0.003 17.1 0.2 0.02 14.4 0.2 2.1 1 1 0 1 1 1 1 HSP20-like domain found in ArsA MscS_TM PF12794.7 gi|336252237|ref|YP_004595344.1| - 6.6 5.5 11.0 10 4.9 11.0 1.2 1 0 0 1 1 1 0 Mechanosensitive ion channel inner membrane domain 1 Gas_vesicle PF00741.18 gi|336252238|ref|YP_004595345.1| - 8.2e-14 51.5 4.4 1.5e-13 50.7 4.4 1.4 1 0 0 1 1 1 1 Gas vesicle protein GvpK PF05121.12 gi|336252239|ref|YP_004595346.1| - 1.8e-24 85.6 6.8 2.3e-24 85.3 6.8 1.1 1 0 0 1 1 1 1 Gas vesicle protein K Jnk-SapK_ap_N PF09744.9 gi|336252239|ref|YP_004595346.1| - 0.0014 18.9 0.7 0.0018 18.6 0.7 1.1 1 0 0 1 1 1 1 JNK_SAPK-associated protein-1 DUF2730 PF10805.8 gi|336252239|ref|YP_004595346.1| - 0.026 14.6 0.1 0.033 14.3 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2730) Glu-tRNAGln PF02686.15 gi|336252239|ref|YP_004595346.1| - 0.037 14.3 1.1 0.057 13.7 1.1 1.4 1 0 0 1 1 1 0 Glu-tRNAGln amidotransferase C subunit DLP_helical PF18709.1 gi|336252239|ref|YP_004595346.1| - 0.044 13.0 0.3 0.05 12.8 0.3 1.0 1 0 0 1 1 1 0 Dynamin-like helical domain Csm1_N PF18504.1 gi|336252239|ref|YP_004595346.1| - 0.046 14.1 0.7 0.069 13.5 0.7 1.3 1 0 0 1 1 1 0 Csm1 N-terminal domain Rx_N PF18052.1 gi|336252239|ref|YP_004595346.1| - 0.059 13.6 1.4 0.073 13.4 1.4 1.1 1 0 0 1 1 1 0 Rx N-terminal domain FlxA PF14282.6 gi|336252239|ref|YP_004595346.1| - 0.061 13.3 0.0 0.074 13.1 0.0 1.2 1 0 0 1 1 1 0 FlxA-like protein FlaC_arch PF05377.11 gi|336252239|ref|YP_004595346.1| - 0.099 13.1 0.2 0.21 12.0 0.2 1.6 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) TetR_C_24 PF17932.1 gi|336252239|ref|YP_004595346.1| - 0.13 12.6 1.4 0.2 12.0 1.3 1.3 1 1 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain MobC PF05713.11 gi|336252239|ref|YP_004595346.1| - 0.15 12.6 0.1 0.3 11.6 0.1 1.6 1 0 0 1 1 1 0 Bacterial mobilisation protein (MobC) GvpL_GvpF PF06386.11 gi|336252240|ref|YP_004595347.1| - 4.4e-80 269.1 0.7 5.3e-80 268.9 0.7 1.1 1 0 0 1 1 1 1 Gas vesicle synthesis protein GvpL/GvpF Gas_vesicle PF00741.18 gi|336252241|ref|YP_004595348.1| - 7.1e-13 48.5 9.7 8.8e-13 48.2 9.7 1.1 1 0 0 1 1 1 1 Gas vesicle protein zf-CCHC_2 PF13696.6 gi|336252242|ref|YP_004595349.1| - 0.086 12.7 1.8 0.12 12.2 0.2 1.9 2 0 0 2 2 2 0 Zinc knuckle Kp4 PF09044.10 gi|336252242|ref|YP_004595349.1| - 0.092 12.8 0.2 0.11 12.6 0.2 1.1 1 0 0 1 1 1 0 Kp4 Lar_restr_allev PF14354.6 gi|336252242|ref|YP_004595349.1| - 0.11 12.9 1.8 2 8.8 0.1 2.1 1 1 1 2 2 2 0 Restriction alleviation protein Lar MqsA_antitoxin PF15731.5 gi|336252242|ref|YP_004595349.1| - 0.14 12.3 0.4 0.17 12.0 0.4 1.0 1 0 0 1 1 1 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA ABATE PF07336.11 gi|336252245|ref|YP_004595352.1| - 0.0056 17.3 2.3 0.0084 16.8 2.3 1.3 1 0 0 1 1 1 1 Putative stress-induced transcription regulator DUF5346 PF17281.2 gi|336252245|ref|YP_004595352.1| - 0.021 14.9 0.3 0.081 13.0 0.6 1.7 2 0 0 2 2 2 0 Family of unknown function (DUF5346) Molybdopterin PF00384.22 gi|336252246|ref|YP_004595353.1| - 3e-75 253.8 0.0 3.8e-75 253.5 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|336252246|ref|YP_004595353.1| - 5.6e-29 100.4 0.1 1.3e-28 99.3 0.1 1.6 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|336252246|ref|YP_004595353.1| - 3.4e-14 52.6 0.6 8.3e-14 51.3 0.6 1.7 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain CSD PF00313.22 gi|336252247|ref|YP_004595354.1| - 4.6e-19 68.0 0.4 5e-19 67.9 0.4 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain OB_RNB PF08206.11 gi|336252247|ref|YP_004595354.1| - 0.081 12.6 2.7 0.11 12.2 2.7 1.3 1 0 0 1 1 1 0 Ribonuclease B OB domain S1-like PF14444.6 gi|336252247|ref|YP_004595354.1| - 0.15 12.0 1.9 0.36 10.8 1.9 1.7 1 1 0 1 1 1 0 S1-like Glyoxalase PF00903.25 gi|336252248|ref|YP_004595355.1| - 1.6e-10 41.3 0.5 3.1e-10 40.4 0.5 1.5 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 gi|336252248|ref|YP_004595355.1| - 1.4e-06 29.0 0.3 2e-06 28.6 0.3 1.2 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_2 PF12681.7 gi|336252248|ref|YP_004595355.1| - 0.00046 20.1 0.0 0.0018 18.2 0.0 1.8 1 1 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_4 PF13669.6 gi|336252248|ref|YP_004595355.1| - 0.0077 16.5 0.1 0.011 16.0 0.1 1.2 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily NMT1 PF09084.11 gi|336252249|ref|YP_004595356.1| - 7.7e-33 114.3 0.0 1.3e-32 113.5 0.0 1.4 1 0 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.7 gi|336252249|ref|YP_004595356.1| - 1.7e-06 27.8 0.2 2.4e-06 27.3 0.2 1.4 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein NMT1_2 PF13379.6 gi|336252249|ref|YP_004595356.1| - 2.1e-05 24.4 0.1 0.00044 20.0 0.1 2.4 1 1 0 1 1 1 1 NMT1-like family NMT1 PF09084.11 gi|336252250|ref|YP_004595357.1| - 1.1e-08 35.3 0.0 1.7e-08 34.7 0.0 1.3 1 0 0 1 1 1 1 NMT1/THI5 like SBP_bac_3 PF00497.20 gi|336252250|ref|YP_004595357.1| - 0.00071 19.1 0.0 0.0011 18.5 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Phosphonate-bd PF12974.7 gi|336252250|ref|YP_004595357.1| - 0.0069 16.0 0.0 0.0096 15.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein NMT1 PF09084.11 gi|336252251|ref|YP_004595358.1| - 4.9e-11 43.0 0.0 8.3e-09 35.7 0.0 3.1 1 1 0 1 1 1 1 NMT1/THI5 like SBP_bac_3 PF00497.20 gi|336252251|ref|YP_004595358.1| - 0.0017 17.8 0.0 0.0033 16.9 0.0 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 NMT1_2 PF13379.6 gi|336252251|ref|YP_004595358.1| - 0.0051 16.6 0.0 0.74 9.5 0.0 2.4 2 1 0 2 2 2 2 NMT1-like family Cupin_2 PF07883.11 gi|336252252|ref|YP_004595359.1| - 2.3e-21 75.3 0.8 3e-21 74.9 0.8 1.1 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|336252252|ref|YP_004595359.1| - 4.5e-07 29.8 0.1 5.6e-07 29.5 0.1 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_3 PF05899.12 gi|336252252|ref|YP_004595359.1| - 7.9e-06 25.5 0.0 1e-05 25.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF861) Cupin_1 PF00190.22 gi|336252252|ref|YP_004595359.1| - 4.5e-05 23.1 0.0 5.8e-05 22.7 0.0 1.1 1 0 0 1 1 1 1 Cupin MannoseP_isomer PF01050.18 gi|336252252|ref|YP_004595359.1| - 0.0027 17.6 0.0 0.0035 17.3 0.0 1.2 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Cupin_7 PF12973.7 gi|336252252|ref|YP_004595359.1| - 0.0095 15.8 0.0 0.012 15.5 0.0 1.3 1 0 0 1 1 1 1 ChrR Cupin-like domain CENP-C_C PF11699.8 gi|336252252|ref|YP_004595359.1| - 0.031 14.5 0.0 0.041 14.1 0.0 1.1 1 0 0 1 1 1 0 Mif2/CENP-C like EutQ PF06249.12 gi|336252252|ref|YP_004595359.1| - 0.051 13.3 0.0 0.066 13.0 0.0 1.2 1 0 0 1 1 1 0 Ethanolamine utilisation protein EutQ AraC_binding_2 PF14525.6 gi|336252252|ref|YP_004595359.1| - 0.052 13.2 0.1 0.056 13.1 0.1 1.1 1 0 0 1 1 1 0 AraC-binding-like domain CDO_I PF05995.12 gi|336252252|ref|YP_004595359.1| - 0.078 12.3 0.0 0.099 12.0 0.0 1.3 1 0 0 1 1 1 0 Cysteine dioxygenase type I NMT1 PF09084.11 gi|336252254|ref|YP_004595361.1| - 4.9e-34 118.2 0.0 7.3e-34 117.6 0.0 1.2 1 0 0 1 1 1 1 NMT1/THI5 like NMT1_2 PF13379.6 gi|336252254|ref|YP_004595361.1| - 0.0096 15.6 1.2 0.21 11.2 0.2 3.1 2 1 0 2 2 2 1 NMT1-like family TAT_signal PF10518.9 gi|336252254|ref|YP_004595361.1| - 0.091 12.6 3.4 0.24 11.3 3.4 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.9 gi|336252254|ref|YP_004595361.1| - 0.31 10.4 2.6 0.82 9.1 2.6 1.7 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal BPD_transp_1 PF00528.22 gi|336252255|ref|YP_004595362.1| - 4.6e-21 75.4 12.7 4.6e-21 75.4 12.7 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|336252256|ref|YP_004595363.1| - 6.5e-18 65.1 10.9 6.5e-18 65.1 10.9 1.5 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component PC_rep PF01851.22 gi|336252256|ref|YP_004595363.1| - 0.92 10.1 3.2 1.1e+02 3.5 0.2 4.0 4 0 0 4 4 4 0 Proteasome/cyclosome repeat DUF2070 PF09843.9 gi|336252256|ref|YP_004595363.1| - 0.99 7.6 5.0 2.7 6.2 5.0 1.6 1 1 0 1 1 1 0 Predicted membrane protein (DUF2070) ABC_tran PF00005.27 gi|336252257|ref|YP_004595364.1| - 5.5e-30 104.7 0.0 1e-29 103.8 0.0 1.4 2 0 0 2 2 1 1 ABC transporter AAA_16 PF13191.6 gi|336252257|ref|YP_004595364.1| - 2.5e-06 28.0 0.1 4.3e-06 27.2 0.1 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_21 PF13304.6 gi|336252257|ref|YP_004595364.1| - 7.1e-06 26.0 0.0 0.0047 16.8 0.0 2.4 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|336252257|ref|YP_004595364.1| - 0.0003 21.1 0.4 0.0013 19.1 0.4 2.0 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|336252257|ref|YP_004595364.1| - 0.00058 19.6 0.1 0.0016 18.2 0.1 1.8 2 1 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|336252257|ref|YP_004595364.1| - 0.00074 19.7 0.0 0.0015 18.7 0.0 1.6 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|336252257|ref|YP_004595364.1| - 0.0037 17.2 0.0 0.0061 16.5 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase ABC_ATPase PF09818.9 gi|336252257|ref|YP_004595364.1| - 0.0048 15.8 0.1 0.69 8.6 0.0 2.4 2 1 0 2 2 2 1 Predicted ATPase of the ABC class NB-ARC PF00931.22 gi|336252257|ref|YP_004595364.1| - 0.012 14.9 0.0 0.022 14.0 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain AAA_25 PF13481.6 gi|336252257|ref|YP_004595364.1| - 0.014 15.0 0.0 0.038 13.6 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|336252257|ref|YP_004595364.1| - 0.018 15.5 0.1 0.097 13.1 0.1 2.1 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 gi|336252257|ref|YP_004595364.1| - 0.02 14.8 0.1 0.049 13.6 0.1 1.6 1 0 0 1 1 1 0 NACHT domain AAA_29 PF13555.6 gi|336252257|ref|YP_004595364.1| - 0.023 14.4 0.0 0.042 13.6 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain ATPase_2 PF01637.18 gi|336252257|ref|YP_004595364.1| - 0.026 14.4 0.0 0.051 13.5 0.0 1.5 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea SMC_N PF02463.19 gi|336252257|ref|YP_004595364.1| - 0.035 13.5 0.0 0.86 9.0 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_14 PF13173.6 gi|336252257|ref|YP_004595364.1| - 0.036 14.1 0.0 0.19 11.8 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|336252257|ref|YP_004595364.1| - 0.048 13.9 0.7 0.31 11.3 0.0 2.4 2 1 1 3 3 3 0 AAA domain AAA_23 PF13476.6 gi|336252257|ref|YP_004595364.1| - 0.058 13.9 0.1 0.09 13.3 0.1 1.2 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|336252257|ref|YP_004595364.1| - 0.12 12.1 0.0 0.23 11.2 0.0 1.5 2 0 0 2 2 2 0 AAA domain PIG-L PF02585.17 gi|336252257|ref|YP_004595364.1| - 0.12 13.0 0.0 0.22 12.2 0.0 1.5 1 1 0 1 1 1 0 GlcNAc-PI de-N-acetylase Rad17 PF03215.15 gi|336252257|ref|YP_004595364.1| - 0.14 12.1 0.0 0.22 11.4 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain cobW PF02492.19 gi|336252257|ref|YP_004595364.1| - 0.21 11.1 0.1 0.34 10.5 0.1 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_7 PF12775.7 gi|336252257|ref|YP_004595364.1| - 0.25 10.9 0.0 0.51 9.8 0.0 1.5 2 0 0 2 2 1 0 P-loop containing dynein motor region PduV-EutP PF10662.9 gi|336252257|ref|YP_004595364.1| - 0.25 11.1 0.1 0.43 10.3 0.1 1.3 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation NTPase_1 PF03266.15 gi|336252257|ref|YP_004595364.1| - 0.28 11.1 0.7 4.8 7.1 0.2 2.2 2 0 0 2 2 2 0 NTPase AAA_15 PF13175.6 gi|336252257|ref|YP_004595364.1| - 0.32 10.7 0.0 0.46 10.1 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain NMT1 PF09084.11 gi|336252258|ref|YP_004595365.1| - 6.9e-29 101.3 0.0 9.6e-29 100.9 0.0 1.1 1 0 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.7 gi|336252258|ref|YP_004595365.1| - 2.1e-06 27.5 0.0 3.4e-06 26.8 0.0 1.4 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein MarR_2 PF12802.7 gi|336252258|ref|YP_004595365.1| - 0.0032 17.3 3.2 0.028 14.3 1.4 2.8 2 0 0 2 2 2 1 MarR family NMT1_2 PF13379.6 gi|336252258|ref|YP_004595365.1| - 0.027 14.2 0.0 0.054 13.2 0.0 1.5 1 0 0 1 1 1 0 NMT1-like family PQQ PF01011.21 gi|336252260|ref|YP_004595367.1| - 1.3e-27 94.4 7.3 6.8e-05 22.6 0.1 7.7 7 0 0 7 7 7 5 PQQ enzyme repeat PQQ_2 PF13360.6 gi|336252260|ref|YP_004595367.1| - 4.6e-22 78.8 5.5 1.5e-11 44.3 0.0 3.4 2 1 1 3 3 3 3 PQQ-like domain PQQ_3 PF13570.6 gi|336252260|ref|YP_004595367.1| - 2.8e-10 40.4 30.7 0.001 19.5 0.2 7.6 7 1 0 7 7 7 4 PQQ-like domain Copper-bind PF00127.20 gi|336252261|ref|YP_004595368.1| - 1.7e-09 38.0 0.2 6.1e-08 33.0 0.0 2.9 2 1 0 2 2 2 1 Copper binding proteins, plastocyanin/azurin family TAT_signal PF10518.9 gi|336252261|ref|YP_004595368.1| - 0.004 16.9 2.8 0.0073 16.1 2.8 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Gp5_C PF06715.12 gi|336252261|ref|YP_004595368.1| - 0.014 15.4 5.3 0.014 15.4 5.3 5.9 5 2 2 7 7 7 0 Gp5 C-terminal repeat (3 copies) PEGA PF08308.11 gi|336252261|ref|YP_004595368.1| - 0.36 10.7 0.0 0.36 10.7 0.0 3.6 5 0 0 5 5 5 0 PEGA domain Haem_degrading PF03928.14 gi|336252262|ref|YP_004595369.1| - 3.6e-34 117.4 0.3 4e-34 117.2 0.3 1.0 1 0 0 1 1 1 1 Haem-degrading ADH_N PF08240.12 gi|336252263|ref|YP_004595370.1| - 2.1e-27 95.1 0.3 3.7e-27 94.4 0.3 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|336252263|ref|YP_004595370.1| - 8.6e-11 41.9 0.0 3.1e-10 40.1 0.0 1.8 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_N_assoc PF13823.6 gi|336252263|ref|YP_004595370.1| - 5.5e-10 39.0 0.9 1.5e-09 37.6 0.9 1.8 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-associated Glu_dehyd_C PF16912.5 gi|336252263|ref|YP_004595370.1| - 0.0033 16.9 0.0 0.017 14.6 0.0 2.1 2 0 0 2 2 2 1 Glucose dehydrogenase C-terminus HI0933_like PF03486.14 gi|336252263|ref|YP_004595370.1| - 0.0043 15.8 0.1 0.028 13.1 0.1 1.9 2 0 0 2 2 2 1 HI0933-like protein AlaDh_PNT_C PF01262.21 gi|336252263|ref|YP_004595370.1| - 0.0065 15.8 0.0 0.011 15.0 0.0 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox_3 PF13738.6 gi|336252263|ref|YP_004595370.1| - 0.17 11.1 0.0 0.28 10.4 0.0 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase HATPase_c PF02518.26 gi|336252264|ref|YP_004595371.1| - 8.9e-30 103.5 0.1 4.3e-29 101.3 0.0 2.1 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|336252264|ref|YP_004595371.1| - 1.3e-13 51.1 0.0 4e-13 49.5 0.0 1.9 1 0 0 1 1 1 1 PAS domain GAF_3 PF13492.6 gi|336252264|ref|YP_004595371.1| - 2.3e-11 44.2 0.1 6.6e-11 42.7 0.0 1.9 2 0 0 2 2 1 1 GAF domain PAS_4 PF08448.10 gi|336252264|ref|YP_004595371.1| - 7.6e-10 39.0 0.1 2.8e-09 37.2 0.1 2.0 1 0 0 1 1 1 1 PAS fold GAF PF01590.26 gi|336252264|ref|YP_004595371.1| - 1.1e-09 39.0 0.2 2.8e-09 37.7 0.2 1.7 1 0 0 1 1 1 1 GAF domain PAS PF00989.25 gi|336252264|ref|YP_004595371.1| - 3.1e-09 36.8 0.0 1.1e-08 35.1 0.0 2.0 1 0 0 1 1 1 1 PAS fold GAF_2 PF13185.6 gi|336252264|ref|YP_004595371.1| - 3.4e-09 37.1 1.1 1.3e-08 35.3 1.1 2.1 1 0 0 1 1 1 1 GAF domain HisKA PF00512.25 gi|336252264|ref|YP_004595371.1| - 4.4e-09 36.3 5.2 1.5e-08 34.5 0.0 3.8 2 1 1 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_3 PF08447.12 gi|336252264|ref|YP_004595371.1| - 1.4e-07 31.7 0.1 1.3e-05 25.4 0.0 3.2 3 0 0 3 3 3 1 PAS fold HisKA_4TM PF16926.5 gi|336252264|ref|YP_004595371.1| - 1.2e-06 28.2 2.6 3e-06 26.9 2.6 1.7 1 0 0 1 1 1 1 Archaeal 4TM region of histidine kinase HATPase_c_5 PF14501.6 gi|336252264|ref|YP_004595371.1| - 0.00014 21.7 0.0 0.00048 20.0 0.0 1.8 2 0 0 2 2 1 1 GHKL domain HATPase_c_2 PF13581.6 gi|336252264|ref|YP_004595371.1| - 0.0002 21.3 0.0 0.00052 20.0 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain DUF327 PF03885.13 gi|336252264|ref|YP_004595371.1| - 0.0017 18.3 3.0 0.28 11.1 0.4 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF327) Syntaxin-6_N PF09177.11 gi|336252264|ref|YP_004595371.1| - 0.022 15.3 0.6 0.022 15.3 0.6 2.7 3 0 0 3 3 2 0 Syntaxin 6, N-terminal Tektin PF03148.14 gi|336252264|ref|YP_004595371.1| - 0.034 12.9 7.1 0.035 12.9 4.0 2.2 2 0 0 2 2 2 0 Tektin family RasGAP_C PF03836.15 gi|336252264|ref|YP_004595371.1| - 0.066 13.4 1.9 0.081 13.1 0.2 2.0 2 0 0 2 2 2 0 RasGAP C-terminus PAS_8 PF13188.7 gi|336252264|ref|YP_004595371.1| - 0.098 12.7 0.1 0.41 10.7 0.1 2.1 1 0 0 1 1 1 0 PAS domain bZIP_1 PF00170.21 gi|336252264|ref|YP_004595371.1| - 0.11 12.6 14.6 0.46 10.6 0.2 3.1 3 1 1 4 4 3 0 bZIP transcription factor HATPase_c_3 PF13589.6 gi|336252264|ref|YP_004595371.1| - 0.11 12.3 0.0 0.27 11.1 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 23S_rRNA_IVP PF05635.11 gi|336252264|ref|YP_004595371.1| - 0.2 11.9 2.2 9 6.6 0.3 2.3 2 0 0 2 2 2 0 23S rRNA-intervening sequence protein Ax_dynein_light PF10211.9 gi|336252264|ref|YP_004595371.1| - 0.26 11.2 8.4 4 7.3 3.4 2.5 2 0 0 2 2 2 0 Axonemal dynein light chain Streptin-Immun PF11083.8 gi|336252264|ref|YP_004595371.1| - 0.3 11.5 7.3 5.3 7.5 0.3 2.5 2 0 0 2 2 2 0 Lantibiotic streptin immunity protein HemX PF04375.14 gi|336252264|ref|YP_004595371.1| - 0.37 10.0 7.0 0.16 11.3 0.2 2.8 3 0 0 3 3 3 0 HemX, putative uroporphyrinogen-III C-methyltransferase Fmp27_WPPW PF10359.9 gi|336252264|ref|YP_004595371.1| - 0.44 9.3 3.8 0.14 11.0 0.7 1.6 2 0 0 2 2 2 0 RNA pol II promoter Fmp27 protein domain OmpH PF03938.14 gi|336252264|ref|YP_004595371.1| - 0.5 10.7 11.6 3.1 8.1 2.3 3.2 3 0 0 3 3 3 0 Outer membrane protein (OmpH-like) Spc7 PF08317.11 gi|336252264|ref|YP_004595371.1| - 0.51 9.2 8.3 0.18 10.6 2.5 2.4 2 0 0 2 2 2 0 Spc7 kinetochore protein DUF5082 PF16888.5 gi|336252264|ref|YP_004595371.1| - 0.81 10.0 6.7 3.4 8.0 2.3 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF5082) DUF2205 PF10224.9 gi|336252264|ref|YP_004595371.1| - 3.7 7.6 9.2 0.58 10.2 4.2 2.2 2 0 0 2 2 1 0 Short coiled-coil protein Exonuc_VII_S PF02609.16 gi|336252264|ref|YP_004595371.1| - 4 7.6 9.8 13 6.0 3.6 2.5 2 0 0 2 2 2 0 Exonuclease VII small subunit UPF0242 PF06785.11 gi|336252264|ref|YP_004595371.1| - 4.9 7.2 12.2 0.76 9.8 0.7 2.6 3 0 0 3 3 2 0 Uncharacterised protein family (UPF0242) N-terminus DUF3450 PF11932.8 gi|336252264|ref|YP_004595371.1| - 5.9 6.1 13.1 0.039 13.3 0.5 2.6 3 0 0 3 3 2 0 Protein of unknown function (DUF3450) Spc24 PF08286.11 gi|336252264|ref|YP_004595371.1| - 7.8 6.8 7.0 4.2 7.6 1.9 2.5 2 0 0 2 2 2 0 Spc24 subunit of Ndc80 DUF4200 PF13863.6 gi|336252264|ref|YP_004595371.1| - 8.7 6.8 12.8 1.1 9.6 2.4 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF4200) HNOBA PF07701.14 gi|336252264|ref|YP_004595371.1| - 9.6 5.6 8.4 0.45 9.9 0.4 2.3 3 0 0 3 3 2 0 Heme NO binding associated PGBA_C PF15437.6 gi|336252264|ref|YP_004595371.1| - 10 6.6 11.4 26 5.3 4.4 2.4 2 0 0 2 2 2 0 Plasminogen-binding protein pgbA C-terminal APOC4 PF15119.6 gi|336252265|ref|YP_004595372.1| - 0.06 13.6 0.1 0.062 13.6 0.1 1.1 1 0 0 1 1 1 0 Apolipoprotein C4 cobW PF02492.19 gi|336252267|ref|YP_004595374.1| - 1.7e-51 174.3 0.0 2.2e-51 173.9 0.0 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain CobW_C PF07683.14 gi|336252267|ref|YP_004595374.1| - 1.3e-28 98.7 0.0 2.4e-28 97.9 0.0 1.5 1 0 0 1 1 1 1 Cobalamin synthesis protein cobW C-terminal domain GTP_EFTU PF00009.27 gi|336252267|ref|YP_004595374.1| - 0.00028 20.5 0.0 0.084 12.4 0.0 2.2 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain RsgA_GTPase PF03193.16 gi|336252267|ref|YP_004595374.1| - 0.0028 17.6 0.0 0.4 10.6 0.0 2.3 2 0 0 2 2 2 1 RsgA GTPase AAA_16 PF13191.6 gi|336252267|ref|YP_004595374.1| - 0.0082 16.5 0.0 0.023 15.1 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain T2SSE PF00437.20 gi|336252267|ref|YP_004595374.1| - 0.0095 15.0 0.0 0.016 14.3 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_33 PF13671.6 gi|336252267|ref|YP_004595374.1| - 0.085 13.0 0.0 0.18 12.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|336252267|ref|YP_004595374.1| - 0.11 12.6 0.0 0.35 11.0 0.0 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase PfaD_N PF18328.1 gi|336252267|ref|YP_004595374.1| - 0.17 11.8 0.1 0.44 10.5 0.1 1.7 1 0 0 1 1 1 0 Fatty acid synthase subunit PfaD N-terminal domain HTH_5 PF01022.20 gi|336252268|ref|YP_004595375.1| - 3.2e-14 52.5 0.0 7.7e-14 51.3 0.0 1.6 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|336252268|ref|YP_004595375.1| - 9.1e-13 48.1 0.2 1.2e-12 47.7 0.2 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|336252268|ref|YP_004595375.1| - 8.4e-06 25.6 0.0 1.1e-05 25.2 0.0 1.3 1 1 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|336252268|ref|YP_004595375.1| - 1.4e-05 24.8 0.3 2.4e-05 24.0 0.3 1.5 1 1 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|336252268|ref|YP_004595375.1| - 9e-05 22.0 0.0 0.00057 19.4 0.0 2.0 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding PadR PF03551.14 gi|336252268|ref|YP_004595375.1| - 0.00023 21.0 0.2 0.0012 18.7 0.2 1.9 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family DprA_WH PF17782.1 gi|336252268|ref|YP_004595375.1| - 0.00028 20.9 0.1 0.00052 20.1 0.1 1.4 1 0 0 1 1 1 1 DprA winged helix domain MarR PF01047.22 gi|336252268|ref|YP_004595375.1| - 0.00099 19.0 0.0 0.0014 18.5 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|336252268|ref|YP_004595375.1| - 0.0016 18.9 0.1 0.0021 18.5 0.1 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.19 gi|336252268|ref|YP_004595375.1| - 0.0021 17.9 0.1 0.003 17.4 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF2250 PF10007.9 gi|336252268|ref|YP_004595375.1| - 0.0041 17.2 0.4 0.025 14.7 0.6 1.8 1 1 1 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_45 PF14947.6 gi|336252268|ref|YP_004595375.1| - 0.014 15.4 0.0 0.02 14.9 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_11 PF08279.12 gi|336252268|ref|YP_004595375.1| - 0.032 14.2 0.0 0.044 13.7 0.0 1.3 1 0 0 1 1 1 0 HTH domain Rrf2 PF02082.20 gi|336252268|ref|YP_004595375.1| - 0.033 14.5 0.0 0.046 14.1 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator RP-C PF03428.13 gi|336252268|ref|YP_004595375.1| - 0.034 13.8 0.0 0.046 13.4 0.0 1.2 1 0 0 1 1 1 0 Replication protein C N-terminal domain PaaX PF07848.12 gi|336252268|ref|YP_004595375.1| - 0.062 13.5 0.0 0.09 13.0 0.0 1.2 1 0 0 1 1 1 0 PaaX-like protein Fe_dep_repress PF01325.19 gi|336252268|ref|YP_004595375.1| - 0.094 12.9 0.0 0.14 12.3 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_36 PF13730.6 gi|336252268|ref|YP_004595375.1| - 0.095 12.7 0.0 0.13 12.3 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain PadR PF03551.14 gi|336252272|ref|YP_004595379.1| - 2.7e-17 62.5 1.0 4.1e-17 61.9 1.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.6 gi|336252272|ref|YP_004595379.1| - 1.3e-05 25.6 0.1 9.6e-05 22.8 0.0 2.0 2 0 0 2 2 2 1 Winged helix DNA-binding domain RTP PF02334.16 gi|336252272|ref|YP_004595379.1| - 0.00031 21.4 0.0 0.0004 21.0 0.0 1.3 1 0 0 1 1 1 1 Replication terminator protein DUF1495 PF07381.11 gi|336252272|ref|YP_004595379.1| - 0.0013 18.5 0.0 0.0019 18.0 0.0 1.4 1 1 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) HTH_45 PF14947.6 gi|336252272|ref|YP_004595379.1| - 0.028 14.4 0.1 0.046 13.7 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix Pyrophosphatase PF00719.19 gi|336252273|ref|YP_004595380.1| - 1.3e-51 174.6 1.6 1.4e-51 174.4 1.6 1.0 1 0 0 1 1 1 1 Inorganic pyrophosphatase AAA_31 PF13614.6 gi|336252274|ref|YP_004595381.1| - 3e-31 108.7 0.0 4e-31 108.3 0.0 1.1 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|336252274|ref|YP_004595381.1| - 2e-18 66.7 0.0 4.4e-18 65.6 0.0 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain CBP_BcsQ PF06564.12 gi|336252274|ref|YP_004595381.1| - 5.7e-09 35.8 0.1 1.3e-08 34.6 0.1 1.6 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ ParA PF10609.9 gi|336252274|ref|YP_004595381.1| - 7.7e-09 35.4 0.4 1.8e-08 34.1 0.1 1.7 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 gi|336252274|ref|YP_004595381.1| - 1.2e-08 34.5 0.3 1.6e-07 30.8 0.3 2.1 1 1 0 1 1 1 1 Anion-transporting ATPase MipZ PF09140.11 gi|336252274|ref|YP_004595381.1| - 1.4e-07 31.0 0.9 0.0035 16.7 0.2 3.1 3 0 0 3 3 3 2 ATPase MipZ Fer4_NifH PF00142.18 gi|336252274|ref|YP_004595381.1| - 0.00014 21.4 0.0 0.00026 20.5 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CLP1_P PF16575.5 gi|336252274|ref|YP_004595381.1| - 0.00015 21.6 0.0 0.0003 20.6 0.0 1.4 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop MeaB PF03308.16 gi|336252274|ref|YP_004595381.1| - 0.0031 16.6 0.1 0.0045 16.0 0.1 1.2 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB adh_short_C2 PF13561.6 gi|336252274|ref|YP_004595381.1| - 0.0049 16.4 0.1 0.01 15.4 0.1 1.5 2 0 0 2 2 2 1 Enoyl-(Acyl carrier protein) reductase SRP54 PF00448.22 gi|336252274|ref|YP_004595381.1| - 0.011 15.4 0.1 0.019 14.6 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain VirC1 PF07015.11 gi|336252274|ref|YP_004595381.1| - 0.014 14.7 0.0 0.022 14.1 0.0 1.2 1 0 0 1 1 1 0 VirC1 protein Glyco_transf_4 PF13439.6 gi|336252274|ref|YP_004595381.1| - 0.016 15.2 0.1 0.025 14.6 0.1 1.5 1 1 0 1 1 1 0 Glycosyltransferase Family 4 Thymidylate_kin PF02223.17 gi|336252274|ref|YP_004595381.1| - 0.028 14.1 0.0 0.05 13.3 0.0 1.4 1 0 0 1 1 1 0 Thymidylate kinase Glyco_trans_4_4 PF13579.6 gi|336252274|ref|YP_004595381.1| - 0.064 13.7 4.8 0.24 11.8 4.6 1.9 1 1 0 1 1 1 0 Glycosyl transferase 4-like domain adh_short PF00106.25 gi|336252274|ref|YP_004595381.1| - 0.071 12.6 0.0 0.12 11.8 0.0 1.2 1 0 0 1 1 1 0 short chain dehydrogenase AAA_16 PF13191.6 gi|336252274|ref|YP_004595381.1| - 0.073 13.5 0.2 0.16 12.4 0.2 1.9 1 1 0 1 1 1 0 AAA ATPase domain ATP_bind_1 PF03029.17 gi|336252274|ref|YP_004595381.1| - 0.12 12.1 0.0 0.4 10.4 0.0 1.7 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_18 PF13238.6 gi|336252274|ref|YP_004595381.1| - 0.12 12.9 0.0 0.21 12.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain TrwB_AAD_bind PF10412.9 gi|336252274|ref|YP_004595381.1| - 0.18 10.7 0.0 0.25 10.2 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain Phosphodiest PF01663.22 gi|336252276|ref|YP_004595383.1| - 1.8e-60 205.4 0.1 2.1e-60 205.2 0.1 1.0 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase DUF2990 PF11693.8 gi|336252276|ref|YP_004595383.1| - 0.039 14.1 0.0 0.083 13.1 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2990) Sulfatase PF00884.23 gi|336252276|ref|YP_004595383.1| - 0.043 13.2 1.2 0.42 9.9 0.1 2.3 2 0 0 2 2 2 0 Sulfatase OppC_N PF12911.7 gi|336252277|ref|YP_004595384.1| - 0.29 11.2 1.1 0.35 10.9 1.0 1.5 1 1 0 1 1 1 0 N-terminal TM domain of oligopeptide transport permease C Phage_holin_3_6 PF07332.11 gi|336252277|ref|YP_004595384.1| - 0.5 10.4 8.5 0.55 10.3 8.5 1.0 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III DUF4407 PF14362.6 gi|336252277|ref|YP_004595384.1| - 8.4 5.6 5.8 9.6 5.5 5.8 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) DUF1072 PF06380.11 gi|336252277|ref|YP_004595384.1| - 8.7 6.3 10.5 1.6 8.7 1.6 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF1072) DUF371 PF04027.13 gi|336252278|ref|YP_004595385.1| - 1.5e-52 177.0 0.1 1.7e-52 176.9 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF371) Zn_Tnp_IS1595 PF12760.7 gi|336252279|ref|YP_004595386.1| - 0.00049 20.0 2.8 0.048 13.6 0.1 2.1 2 0 0 2 2 2 2 Transposase zinc-ribbon domain CpXC PF14353.6 gi|336252279|ref|YP_004595386.1| - 0.0012 18.9 1.4 0.0015 18.6 1.4 1.1 1 0 0 1 1 1 1 CpXC protein Cys_rich_CPXG PF14255.6 gi|336252279|ref|YP_004595386.1| - 0.0051 16.7 0.8 0.18 11.7 0.0 2.1 2 0 0 2 2 2 1 Cysteine-rich CPXCG zinc_ribbon_4 PF13717.6 gi|336252279|ref|YP_004595386.1| - 0.0093 15.9 2.8 2.1 8.4 0.3 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_9 PF14369.6 gi|336252279|ref|YP_004595386.1| - 0.011 16.0 1.1 0.49 10.7 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon zf-C2HC_2 PF13913.6 gi|336252279|ref|YP_004595386.1| - 0.015 15.2 6.4 0.26 11.2 1.0 2.2 2 0 0 2 2 2 0 zinc-finger of a C2HC-type zf-ribbon_3 PF13248.6 gi|336252279|ref|YP_004595386.1| - 0.016 14.6 1.9 3.2 7.3 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-C2H2_4 PF13894.6 gi|336252279|ref|YP_004595386.1| - 0.043 14.7 4.9 2.4 9.2 0.1 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger Nudix_N_2 PF14803.6 gi|336252279|ref|YP_004595386.1| - 0.048 13.6 6.5 1.3 9.0 0.4 2.2 2 0 0 2 2 2 0 Nudix N-terminal zf-ISL3 PF14690.6 gi|336252279|ref|YP_004595386.1| - 0.061 14.0 8.0 0.22 12.2 0.6 2.1 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Elf1 PF05129.13 gi|336252279|ref|YP_004595386.1| - 0.068 13.2 4.5 0.19 11.8 4.5 1.7 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like zf-H2C2_2 PF13465.6 gi|336252279|ref|YP_004595386.1| - 0.075 13.5 2.4 4.5 7.9 0.3 2.2 2 0 0 2 2 2 0 Zinc-finger double domain zinc_ribbon_2 PF13240.6 gi|336252279|ref|YP_004595386.1| - 0.079 12.7 4.6 0.83 9.5 0.4 2.3 2 0 0 2 2 2 0 zinc-ribbon domain GFA PF04828.14 gi|336252279|ref|YP_004595386.1| - 0.11 12.8 3.8 0.25 11.7 0.1 2.0 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme OrfB_Zn_ribbon PF07282.11 gi|336252279|ref|YP_004595386.1| - 0.12 12.3 4.5 0.32 11.0 0.7 2.1 1 1 1 2 2 2 0 Putative transposase DNA-binding domain DUF35_N PF12172.8 gi|336252279|ref|YP_004595386.1| - 0.13 12.2 2.5 1.3 9.0 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Zn-ribbon_8 PF09723.10 gi|336252279|ref|YP_004595386.1| - 0.13 12.4 2.6 7.2 6.8 0.1 2.3 2 0 0 2 2 2 0 Zinc ribbon domain zf_UBZ PF18439.1 gi|336252279|ref|YP_004595386.1| - 0.45 10.2 4.5 2 8.1 0.6 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger TF_Zn_Ribbon PF08271.12 gi|336252279|ref|YP_004595386.1| - 0.47 10.0 5.6 6.6 6.3 5.6 2.1 1 1 0 1 1 1 0 TFIIB zinc-binding zf-C2H2 PF00096.26 gi|336252279|ref|YP_004595386.1| - 0.55 10.8 4.4 14 6.4 0.2 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type ADK_lid PF05191.14 gi|336252279|ref|YP_004595386.1| - 0.56 10.2 5.0 2.5 8.1 4.9 2.0 1 1 0 1 1 1 0 Adenylate kinase, active site lid zf-LITAF-like PF10601.9 gi|336252279|ref|YP_004595386.1| - 1.1 9.6 6.6 0.6 10.4 0.8 2.1 1 1 1 2 2 2 0 LITAF-like zinc ribbon domain RseC_MucC PF04246.12 gi|336252279|ref|YP_004595386.1| - 5.6 6.9 6.3 0.77 9.7 1.5 1.8 1 1 1 2 2 2 0 Positive regulator of sigma(E), RseC/MucC HhH-GPD PF00730.25 gi|336252280|ref|YP_004595387.1| - 3.8e-17 62.7 0.0 7.8e-17 61.7 0.0 1.5 2 0 0 2 2 2 1 HhH-GPD superfamily base excision DNA repair protein EndIII_4Fe-2S PF10576.9 gi|336252280|ref|YP_004595387.1| - 1.2e-05 25.5 7.4 2.7e-05 24.4 7.4 1.6 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH PF00633.23 gi|336252280|ref|YP_004595387.1| - 4.8e-05 23.0 0.0 0.00014 21.5 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|336252280|ref|YP_004595387.1| - 0.079 13.6 0.1 0.22 12.2 0.0 1.8 2 0 0 2 2 2 0 Helix-hairpin-helix domain MEDS PF14417.6 gi|336252281|ref|YP_004595388.1| - 1.6e-50 171.1 4.1 1.9e-50 170.8 1.3 2.4 3 0 0 3 3 3 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain HATPase_c PF02518.26 gi|336252281|ref|YP_004595388.1| - 2.1e-29 102.3 0.0 1.4e-28 99.7 0.0 2.2 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|336252281|ref|YP_004595388.1| - 1e-08 35.1 3.5 1.9e-08 34.2 0.0 2.8 3 0 0 3 3 2 1 His Kinase A (phospho-acceptor) domain ATPase PF06745.13 gi|336252281|ref|YP_004595388.1| - 1.3e-07 31.2 0.1 2.7e-07 30.2 0.1 1.4 1 0 0 1 1 1 1 KaiC GAF_2 PF13185.6 gi|336252281|ref|YP_004595388.1| - 3e-07 30.8 0.8 1.4e-06 28.7 0.0 2.6 3 0 0 3 3 3 1 GAF domain GAF_3 PF13492.6 gi|336252281|ref|YP_004595388.1| - 1.1e-05 25.8 0.0 2.2e-05 24.8 0.0 1.6 1 0 0 1 1 1 1 GAF domain HATPase_c_5 PF14501.6 gi|336252281|ref|YP_004595388.1| - 1.4e-05 24.9 0.0 8.6e-05 22.4 0.0 2.1 2 0 0 2 2 2 1 GHKL domain GAF PF01590.26 gi|336252281|ref|YP_004595388.1| - 2e-05 25.2 0.0 0.00012 22.7 0.0 2.3 2 0 0 2 2 2 1 GAF domain HATPase_c_2 PF13581.6 gi|336252281|ref|YP_004595388.1| - 0.014 15.3 0.0 0.033 14.1 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 gi|336252281|ref|YP_004595388.1| - 0.041 13.7 0.0 0.076 12.8 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HEM4 PF02602.15 gi|336252281|ref|YP_004595388.1| - 0.05 12.9 0.0 0.096 12.0 0.0 1.4 1 0 0 1 1 1 0 Uroporphyrinogen-III synthase HemD DUF5380 PF17351.2 gi|336252281|ref|YP_004595388.1| - 0.19 11.6 0.0 0.95 9.4 0.0 2.0 1 1 1 2 2 2 0 Family of unknown function (DUF5380) AAA PF00004.29 gi|336252282|ref|YP_004595389.1| - 8.3e-11 42.4 0.0 3.3e-10 40.5 0.0 2.1 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|336252282|ref|YP_004595389.1| - 2.3e-06 27.4 0.0 4.6e-06 26.5 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_assoc_2 PF16193.5 gi|336252282|ref|YP_004595389.1| - 0.00011 22.5 0.2 0.00038 20.7 0.2 2.0 1 0 0 1 1 1 1 AAA C-terminal domain AAA_25 PF13481.6 gi|336252282|ref|YP_004595389.1| - 0.00041 20.0 0.2 0.13 11.8 0.0 2.9 3 0 0 3 3 3 1 AAA domain AAA_22 PF13401.6 gi|336252282|ref|YP_004595389.1| - 0.00094 19.5 0.0 0.33 11.2 0.0 3.0 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|336252282|ref|YP_004595389.1| - 0.0017 18.1 0.3 0.0047 16.7 0.3 1.8 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|336252282|ref|YP_004595389.1| - 0.0029 18.0 0.4 0.018 15.4 0.0 2.4 2 1 0 3 3 3 1 AAA ATPase domain AAA_28 PF13521.6 gi|336252282|ref|YP_004595389.1| - 0.0061 16.8 0.1 0.023 14.9 0.1 2.1 1 0 0 1 1 1 1 AAA domain Rad17 PF03215.15 gi|336252282|ref|YP_004595389.1| - 0.0075 16.2 0.0 0.015 15.3 0.0 1.4 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_33 PF13671.6 gi|336252282|ref|YP_004595389.1| - 0.0077 16.4 0.2 0.028 14.6 0.0 2.1 2 0 0 2 2 1 1 AAA domain RsgA_GTPase PF03193.16 gi|336252282|ref|YP_004595389.1| - 0.01 15.8 0.0 0.031 14.2 0.0 1.8 2 0 0 2 2 2 1 RsgA GTPase AAA_5 PF07728.14 gi|336252282|ref|YP_004595389.1| - 0.021 14.8 0.0 0.065 13.2 0.0 1.9 2 0 0 2 2 1 0 AAA domain (dynein-related subfamily) Zeta_toxin PF06414.12 gi|336252282|ref|YP_004595389.1| - 0.021 14.1 0.0 0.044 13.1 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin Hydin_ADK PF17213.3 gi|336252282|ref|YP_004595389.1| - 0.022 15.0 0.1 0.022 15.0 0.1 2.6 3 0 0 3 3 3 0 Hydin Adenylate kinase-like domain IstB_IS21 PF01695.17 gi|336252282|ref|YP_004595389.1| - 0.031 14.0 0.0 0.058 13.1 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_18 PF13238.6 gi|336252282|ref|YP_004595389.1| - 0.035 14.7 0.0 0.18 12.4 0.0 2.3 1 0 0 1 1 1 0 AAA domain DNA_pol3_delta PF06144.13 gi|336252282|ref|YP_004595389.1| - 0.056 13.2 0.0 0.099 12.4 0.0 1.4 1 0 0 1 1 1 0 DNA polymerase III, delta subunit RNA_helicase PF00910.22 gi|336252282|ref|YP_004595389.1| - 0.058 13.8 0.0 0.13 12.6 0.0 1.7 1 0 0 1 1 1 0 RNA helicase Bac_DnaA PF00308.18 gi|336252282|ref|YP_004595389.1| - 0.066 13.0 0.1 5.7 6.7 0.0 3.2 3 1 0 3 3 3 0 Bacterial dnaA protein IPT PF01745.16 gi|336252282|ref|YP_004595389.1| - 0.073 12.4 0.0 0.13 11.6 0.0 1.4 1 0 0 1 1 1 0 Isopentenyl transferase DEAD PF00270.29 gi|336252282|ref|YP_004595389.1| - 0.084 12.6 0.0 8.5 6.1 0.0 2.9 3 0 0 3 3 3 0 DEAD/DEAH box helicase DUF2075 PF09848.9 gi|336252282|ref|YP_004595389.1| - 0.12 11.6 0.9 3.8 6.7 0.0 2.8 2 1 1 3 3 3 0 Uncharacterized conserved protein (DUF2075) NACHT PF05729.12 gi|336252282|ref|YP_004595389.1| - 0.16 11.9 0.0 0.5 10.3 0.0 1.8 2 0 0 2 2 1 0 NACHT domain TraH_2 PF06871.11 gi|336252282|ref|YP_004595389.1| - 0.36 10.5 5.0 0.88 9.2 5.0 1.7 1 0 0 1 1 1 0 TraH_2 RNF220 PF15926.5 gi|336252283|ref|YP_004595390.1| - 0.00021 21.0 0.6 0.00024 20.8 0.6 1.0 1 0 0 1 1 1 1 E3 ubiquitin-protein ligase RNF220 zf-Di19 PF05605.12 gi|336252283|ref|YP_004595390.1| - 0.002 18.3 0.7 0.0032 17.7 0.5 1.4 1 1 0 1 1 1 1 Drought induced 19 protein (Di19), zinc-binding zf-C2H2_4 PF13894.6 gi|336252283|ref|YP_004595390.1| - 0.028 15.3 0.5 0.061 14.2 0.2 1.7 2 0 0 2 2 2 0 C2H2-type zinc finger GAGA PF09237.11 gi|336252283|ref|YP_004595390.1| - 0.44 10.4 2.1 0.57 10.0 0.5 1.8 2 0 0 2 2 2 0 GAGA factor Aminotran_1_2 PF00155.21 gi|336252284|ref|YP_004595391.1| - 1.2e-55 189.2 0.0 1.3e-55 189.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|336252284|ref|YP_004595391.1| - 0.0038 15.8 0.0 0.007 15.0 0.0 1.4 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|336252284|ref|YP_004595391.1| - 0.014 14.7 1.4 0.059 12.7 1.4 1.9 1 1 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family OKR_DC_1 PF01276.20 gi|336252284|ref|YP_004595391.1| - 0.036 12.8 0.0 0.068 11.9 0.0 1.4 1 1 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain DUF992 PF06186.11 gi|336252284|ref|YP_004595391.1| - 0.075 12.9 0.1 6.8 6.5 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF992) Aminotran_5 PF00266.19 gi|336252284|ref|YP_004595391.1| - 0.11 11.4 0.0 0.17 10.8 0.0 1.2 1 0 0 1 1 1 0 Aminotransferase class-V Flg_hook PF02120.16 gi|336252284|ref|YP_004595391.1| - 0.15 12.0 0.0 5.3 7.0 0.0 2.4 2 0 0 2 2 2 0 Flagellar hook-length control protein FliK BATS PF06968.13 gi|336252285|ref|YP_004595392.1| - 2.2e-16 59.8 0.0 4.3e-16 58.8 0.0 1.5 1 0 0 1 1 1 1 Biotin and Thiamin Synthesis associated domain Radical_SAM PF04055.21 gi|336252285|ref|YP_004595392.1| - 4e-15 56.6 0.9 2.5e-13 50.8 0.2 2.3 2 0 0 2 2 2 2 Radical SAM superfamily STN PF07660.14 gi|336252285|ref|YP_004595392.1| - 0.19 11.5 0.0 0.41 10.5 0.0 1.5 1 0 0 1 1 1 0 Secretin and TonB N terminus short domain CoA_binding PF02629.19 gi|336252287|ref|YP_004595394.1| - 5.5e-26 91.1 0.8 5.5e-26 91.1 0.8 2.3 2 1 0 2 2 2 1 CoA binding domain Ligase_CoA PF00549.19 gi|336252287|ref|YP_004595394.1| - 2.5e-15 56.6 0.5 5.5e-15 55.5 0.5 1.5 1 0 0 1 1 1 1 CoA-ligase Succ_CoA_lig PF13607.6 gi|336252287|ref|YP_004595394.1| - 5.6e-12 45.6 0.0 8.5e-12 45.0 0.0 1.3 1 0 0 1 1 1 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|336252287|ref|YP_004595394.1| - 2.3e-06 28.1 0.0 1.4e-05 25.5 0.0 2.1 2 0 0 2 2 2 1 CoA binding domain IlvN PF07991.12 gi|336252287|ref|YP_004595394.1| - 0.04 13.5 0.1 0.072 12.7 0.1 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain ATP-grasp_2 PF08442.10 gi|336252288|ref|YP_004595395.1| - 2.6e-62 210.0 0.2 4.2e-62 209.3 0.2 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_5 PF13549.6 gi|336252288|ref|YP_004595395.1| - 7e-20 71.4 3.9 1.3e-18 67.3 3.3 2.5 2 1 0 2 2 2 1 ATP-grasp domain Ligase_CoA PF00549.19 gi|336252288|ref|YP_004595395.1| - 1.7e-13 50.6 0.3 4.7e-13 49.2 0.3 1.6 1 0 0 1 1 1 1 CoA-ligase CPSase_L_D2 PF02786.17 gi|336252288|ref|YP_004595395.1| - 3.3e-13 49.6 0.7 2e-10 40.6 0.4 2.3 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp PF02222.22 gi|336252288|ref|YP_004595395.1| - 1.2e-07 31.5 0.1 2.4e-07 30.5 0.1 1.5 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.19 gi|336252288|ref|YP_004595395.1| - 3e-06 27.1 0.2 6.9e-06 26.0 0.2 1.6 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Succ_CoA_lig PF13607.6 gi|336252288|ref|YP_004595395.1| - 0.084 12.7 0.0 0.15 11.8 0.0 1.4 1 0 0 1 1 1 0 Succinyl-CoA ligase like flavodoxin domain DUF4891 PF16232.5 gi|336252288|ref|YP_004595395.1| - 0.13 12.8 0.0 0.46 11.0 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4891) Dala_Dala_lig_C PF07478.13 gi|336252288|ref|YP_004595395.1| - 0.24 10.9 3.8 0.13 11.8 0.7 2.1 2 1 0 2 2 2 0 D-ala D-ala ligase C-terminus UbiA PF01040.18 gi|336252289|ref|YP_004595396.1| - 2e-22 79.8 18.7 2.9e-22 79.2 18.7 1.3 1 0 0 1 1 1 1 UbiA prenyltransferase family Zn-ribbon_8 PF09723.10 gi|336252290|ref|YP_004595397.1| - 0.0031 17.6 0.9 0.024 14.7 0.1 2.1 2 0 0 2 2 2 1 Zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|336252290|ref|YP_004595397.1| - 0.0098 15.8 0.2 0.013 15.4 0.2 1.3 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DiS_P_DiS PF06750.13 gi|336252290|ref|YP_004595397.1| - 0.025 14.7 0.0 0.029 14.5 0.0 1.1 1 0 0 1 1 1 0 Bacterial Peptidase A24 N-terminal domain DraK_HK_N PF18092.1 gi|336252290|ref|YP_004595397.1| - 0.029 14.8 0.1 0.029 14.8 0.1 1.2 1 0 0 1 1 1 0 DraK Histidine Kinase N-terminal domain HalOD1 PF18545.1 gi|336252292|ref|YP_004595399.1| - 6.5e-20 71.2 0.3 7.6e-20 71.0 0.3 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 DUF4567 PF15131.6 gi|336252293|ref|YP_004595400.1| - 0.021 14.8 0.0 0.022 14.8 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4567) Aldo_ket_red PF00248.21 gi|336252294|ref|YP_004595401.1| - 1.3e-54 185.5 0.0 2.2e-52 178.1 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family FAD_binding_4 PF01565.23 gi|336252294|ref|YP_004595401.1| - 0.14 11.9 0.0 11 5.7 0.0 2.2 2 0 0 2 2 2 0 FAD binding domain Glyco_transf_5 PF08323.11 gi|336252295|ref|YP_004595402.1| - 0.047 13.4 0.1 0.066 12.9 0.1 1.2 1 0 0 1 1 1 0 Starch synthase catalytic domain SLATT_1 PF18181.1 gi|336252295|ref|YP_004595402.1| - 1.3 9.0 5.0 0.8 9.6 2.2 2.0 1 1 1 2 2 2 0 SMODS and SLOG-associating 2TM effector domain 1 GPHR_N PF12537.8 gi|336252295|ref|YP_004595402.1| - 8.4 6.6 6.8 3.8 7.7 2.4 2.2 1 1 1 2 2 2 0 The Golgi pH Regulator (GPHR) Family N-terminal SLAC1 PF03595.17 gi|336252296|ref|YP_004595403.1| - 0.002 17.5 4.6 0.0023 17.3 4.6 1.0 1 0 0 1 1 1 1 Voltage-dependent anion channel Phage_holin_5_2 PF16079.5 gi|336252296|ref|YP_004595403.1| - 0.028 14.7 2.4 0.032 14.5 2.4 1.1 1 0 0 1 1 1 0 Phage holin family Hol44, in holin superfamily V Aconitase PF00330.20 gi|336252296|ref|YP_004595403.1| - 0.38 9.7 1.0 0.41 9.6 1.0 1.0 1 0 0 1 1 1 0 Aconitase family (aconitate hydratase) PAPS_reduct PF01507.19 gi|336252297|ref|YP_004595404.1| - 2e-18 67.1 0.0 1.7e-14 54.2 0.0 3.1 2 1 0 2 2 2 2 Phosphoadenosine phosphosulfate reductase family Diphthami_syn_2 PF01902.17 gi|336252297|ref|YP_004595404.1| - 0.04 13.4 0.0 0.086 12.3 0.0 1.6 2 0 0 2 2 2 0 Diphthamide synthase Epimerase_2 PF02350.19 gi|336252298|ref|YP_004595405.1| - 4.1e-107 358.0 0.0 4.8e-107 357.8 0.0 1.0 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase Glyco_trans_4_4 PF13579.6 gi|336252298|ref|YP_004595405.1| - 0.0081 16.6 0.0 0.021 15.2 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain baeRF_family2 PF18844.1 gi|336252298|ref|YP_004595405.1| - 0.031 14.3 1.2 0.078 13.0 0.8 1.9 1 1 0 1 1 1 0 Bacterial archaeo-eukaryotic release factor family 2 MutL PF13941.6 gi|336252298|ref|YP_004595405.1| - 0.15 10.6 0.0 0.22 10.0 0.0 1.2 1 0 0 1 1 1 0 MutL protein DUF354 PF04007.12 gi|336252299|ref|YP_004595406.1| - 2.7e-07 30.0 0.0 5.2e-07 29.1 0.0 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF354) Glyco_trans_4_4 PF13579.6 gi|336252299|ref|YP_004595406.1| - 0.00015 22.3 0.8 0.0017 18.8 0.8 2.2 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.6 gi|336252299|ref|YP_004595406.1| - 0.0021 18.0 0.1 0.0042 17.1 0.1 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_transf_28 PF03033.20 gi|336252299|ref|YP_004595406.1| - 0.074 13.1 0.0 0.25 11.4 0.0 1.9 1 1 1 2 2 2 0 Glycosyltransferase family 28 N-terminal domain CytB6-F_Fe-S PF08802.10 gi|336252300|ref|YP_004595407.1| - 0.03 14.3 0.1 0.065 13.3 0.1 1.5 1 0 0 1 1 1 0 Cytochrome B6-F complex Fe-S subunit HEPN PF05168.14 gi|336252300|ref|YP_004595407.1| - 0.061 13.4 0.1 0.061 13.4 0.1 2.4 3 1 0 3 3 3 0 HEPN domain CRT10 PF08728.10 gi|336252301|ref|YP_004595408.1| - 0.18 9.9 0.1 0.2 9.8 0.1 1.0 1 0 0 1 1 1 0 CRT10 Glutaredoxin PF00462.24 gi|336252302|ref|YP_004595409.1| - 2.3e-16 59.7 0.0 5.1e-16 58.6 0.0 1.6 2 0 0 2 2 2 1 Glutaredoxin Abhydrolase_1 PF00561.20 gi|336252302|ref|YP_004595409.1| - 0.11 12.1 0.0 0.16 11.6 0.0 1.1 1 0 0 1 1 1 0 alpha/beta hydrolase fold Methyltransf_25 PF13649.6 gi|336252303|ref|YP_004595410.1| - 7e-21 74.7 0.1 2.1e-20 73.2 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|336252303|ref|YP_004595410.1| - 1.1e-18 67.6 0.1 3e-18 66.3 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|336252303|ref|YP_004595410.1| - 6.4e-15 55.3 0.0 7.8e-15 55.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|336252303|ref|YP_004595410.1| - 8.4e-15 55.0 0.0 1.1e-14 54.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|336252303|ref|YP_004595410.1| - 1.6e-10 41.6 0.0 3e-10 40.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|336252303|ref|YP_004595410.1| - 2.2e-07 30.4 0.0 3e-07 30.0 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family CMAS PF02353.20 gi|336252303|ref|YP_004595410.1| - 1.2e-06 28.1 0.0 1.4e-06 27.8 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MetW PF07021.12 gi|336252303|ref|YP_004595410.1| - 7.9e-06 25.6 0.0 1.1e-05 25.1 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW MTS PF05175.14 gi|336252303|ref|YP_004595410.1| - 0.00063 19.3 0.0 0.00092 18.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain CheR PF01739.18 gi|336252303|ref|YP_004595410.1| - 0.00072 19.1 0.0 0.0051 16.3 0.0 2.2 2 1 1 3 3 3 1 CheR methyltransferase, SAM binding domain Methyltransf_8 PF05148.15 gi|336252303|ref|YP_004595410.1| - 0.00072 19.5 0.0 0.0015 18.4 0.0 1.6 1 1 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_29 PF03141.16 gi|336252303|ref|YP_004595410.1| - 0.024 13.2 0.0 0.03 12.9 0.0 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_9 PF08003.11 gi|336252303|ref|YP_004595410.1| - 0.052 12.5 0.0 0.058 12.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) TPMT PF05724.11 gi|336252303|ref|YP_004595410.1| - 0.061 13.0 0.0 0.21 11.2 0.0 1.7 1 1 1 2 2 2 0 Thiopurine S-methyltransferase (TPMT) DUF5348 PF17295.2 gi|336252303|ref|YP_004595410.1| - 0.11 12.4 0.0 0.2 11.6 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF5348) Methyltransf_4 PF02390.17 gi|336252303|ref|YP_004595410.1| - 0.21 11.1 0.0 1.2 8.6 0.0 2.0 1 1 0 1 1 1 0 Putative methyltransferase DUF3948 PF13134.6 gi|336252304|ref|YP_004595411.1| - 0.093 12.4 0.3 0.39 10.5 0.2 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3948) AstE_AspA PF04952.14 gi|336252305|ref|YP_004595412.1| - 1e-16 60.9 0.2 1.8e-16 60.1 0.2 1.4 1 1 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family Peptidase_M99 PF17033.5 gi|336252305|ref|YP_004595412.1| - 0.0023 17.4 0.0 0.004 16.6 0.0 1.3 1 0 0 1 1 1 1 Carboxypeptidase controlling helical cell shape catalytic DUF309 PF03745.14 gi|336252306|ref|YP_004595413.1| - 1.4e-14 53.5 0.2 2.4e-14 52.8 0.2 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF309) OrfB_Zn_ribbon PF07282.11 gi|336252307|ref|YP_004595414.1| - 0.00011 22.1 1.1 0.00014 21.8 1.1 1.1 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zf-HIT PF04438.16 gi|336252307|ref|YP_004595414.1| - 0.00019 21.2 4.0 0.015 15.1 0.3 2.1 2 0 0 2 2 2 2 HIT zinc finger TF_Zn_Ribbon PF08271.12 gi|336252307|ref|YP_004595414.1| - 0.00044 19.7 5.5 0.00074 19.0 5.5 1.6 1 1 0 1 1 1 1 TFIIB zinc-binding DZR PF12773.7 gi|336252307|ref|YP_004595414.1| - 0.00057 19.8 0.7 0.00081 19.4 0.7 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|336252307|ref|YP_004595414.1| - 0.00067 19.0 2.8 0.21 11.1 0.4 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|336252307|ref|YP_004595414.1| - 0.0024 17.8 3.0 0.11 12.5 0.2 2.2 2 0 0 2 2 2 1 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|336252307|ref|YP_004595414.1| - 0.0038 16.9 3.7 0.24 11.2 0.4 2.2 2 0 0 2 2 2 1 zinc-ribbon domain FYDLN_acid PF09538.10 gi|336252307|ref|YP_004595414.1| - 0.0051 17.5 0.2 0.0061 17.2 0.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (FYDLN_acid) Rep_fac-A_C PF08646.10 gi|336252307|ref|YP_004595414.1| - 0.0072 16.1 0.1 0.0073 16.1 0.1 1.1 1 0 0 1 1 1 1 Replication factor-A C terminal domain DUF35_N PF12172.8 gi|336252307|ref|YP_004595414.1| - 0.011 15.6 2.3 0.76 9.7 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc-ribbons_6 PF07191.12 gi|336252307|ref|YP_004595414.1| - 0.012 15.5 0.2 0.015 15.3 0.2 1.2 1 0 0 1 1 1 0 zinc-ribbons Rubredoxin_2 PF18073.1 gi|336252307|ref|YP_004595414.1| - 0.014 15.1 7.0 0.068 12.9 0.8 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain C1_1 PF00130.22 gi|336252307|ref|YP_004595414.1| - 0.015 15.2 0.3 0.019 14.8 0.3 1.1 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DUF4589 PF15252.6 gi|336252307|ref|YP_004595414.1| - 0.018 15.0 1.2 0.019 15.0 1.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4589) NRDD PF13597.6 gi|336252307|ref|YP_004595414.1| - 0.019 13.8 0.8 0.02 13.7 0.8 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase zf-ACC PF17848.1 gi|336252307|ref|YP_004595414.1| - 0.026 14.6 1.1 1.9 8.7 0.2 2.3 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain HypA PF01155.19 gi|336252307|ref|YP_004595414.1| - 0.029 14.4 0.2 0.03 14.3 0.2 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-RRN7 PF11781.8 gi|336252307|ref|YP_004595414.1| - 0.053 13.2 6.4 0.077 12.7 6.4 1.2 1 0 0 1 1 1 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Zn_Tnp_IS1595 PF12760.7 gi|336252307|ref|YP_004595414.1| - 0.053 13.5 5.2 0.13 12.2 5.3 1.6 1 1 0 1 1 1 0 Transposase zinc-ribbon domain zf-NADH-PPase PF09297.11 gi|336252307|ref|YP_004595414.1| - 0.059 13.0 4.0 0.99 9.1 0.5 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-LITAF-like PF10601.9 gi|336252307|ref|YP_004595414.1| - 0.08 13.2 0.5 11 6.3 0.2 2.1 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain zf_UBZ PF18439.1 gi|336252307|ref|YP_004595414.1| - 0.088 12.4 0.5 9 6.0 0.1 2.3 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger Zn_ribbon_SprT PF17283.2 gi|336252307|ref|YP_004595414.1| - 0.11 12.5 6.9 1.4 8.9 1.4 2.1 2 0 0 2 2 2 0 SprT-like zinc ribbon domain Auto_anti-p27 PF06677.12 gi|336252307|ref|YP_004595414.1| - 0.11 12.7 1.5 0.14 12.3 1.5 1.2 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Sgf11 PF08209.11 gi|336252307|ref|YP_004595414.1| - 0.12 12.0 3.1 3.5 7.3 0.3 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Zn-ribbon_8 PF09723.10 gi|336252307|ref|YP_004595414.1| - 0.13 12.4 4.2 5.6 7.2 0.1 2.3 2 1 0 2 2 2 0 Zinc ribbon domain NESP55 PF06390.12 gi|336252307|ref|YP_004595414.1| - 0.14 11.8 2.4 0.14 11.8 2.4 1.1 1 0 0 1 1 1 0 Neuroendocrine-specific golgi protein P55 (NESP55) zinc_ribbon_5 PF13719.6 gi|336252307|ref|YP_004595414.1| - 0.15 11.9 1.7 3 7.7 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zf-IS66 PF13005.7 gi|336252307|ref|YP_004595414.1| - 0.16 12.4 6.3 0.39 11.1 0.3 2.3 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 zf-TFIIB PF13453.6 gi|336252307|ref|YP_004595414.1| - 0.23 10.8 3.6 0.63 9.4 3.5 1.7 1 1 0 1 1 1 0 Transcription factor zinc-finger Ogr_Delta PF04606.12 gi|336252307|ref|YP_004595414.1| - 0.25 11.4 3.2 3 7.9 0.2 2.1 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-RING_4 PF14570.6 gi|336252307|ref|YP_004595414.1| - 0.26 11.1 8.6 6.6 6.6 8.3 2.2 1 1 1 2 2 2 0 RING/Ubox like zinc-binding domain DUF983 PF06170.12 gi|336252307|ref|YP_004595414.1| - 0.28 11.6 3.5 8 6.9 0.2 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF983) zf_C2H2_10 PF18414.1 gi|336252307|ref|YP_004595414.1| - 0.29 10.7 3.3 8.6 6.0 0.1 2.6 3 0 0 3 3 2 0 C2H2 type zinc-finger DUF1610 PF07754.11 gi|336252307|ref|YP_004595414.1| - 0.33 11.0 10.8 0.76 9.8 3.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf-ISL3 PF14690.6 gi|336252307|ref|YP_004595414.1| - 0.53 11.0 6.5 0.7 10.6 0.4 2.1 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zinc_ribbon_10 PF10058.9 gi|336252307|ref|YP_004595414.1| - 1.1 9.1 4.7 38 4.1 0.4 2.2 1 1 1 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein zf_Rg PF17915.1 gi|336252307|ref|YP_004595414.1| - 1.1 8.7 7.4 5.6 6.4 0.5 2.1 1 1 1 2 2 2 0 Reverse gyrase zinc finger DNA_ligase_ZBD PF03119.16 gi|336252307|ref|YP_004595414.1| - 4.2 7.5 9.8 0.76 9.9 5.7 1.9 2 1 0 2 2 1 0 NAD-dependent DNA ligase C4 zinc finger domain zf-RING_7 PF02591.15 gi|336252307|ref|YP_004595414.1| - 6 7.1 8.6 16 5.8 0.2 2.6 3 0 0 3 3 3 0 C4-type zinc ribbon domain DUF3797 PF12677.7 gi|336252307|ref|YP_004595414.1| - 7.7 6.5 8.1 2.8 7.9 0.8 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) VKG_Carbox PF05090.14 gi|336252308|ref|YP_004595415.1| - 1.4e-12 47.2 0.0 1.7e-12 46.9 0.0 1.1 1 0 0 1 1 1 1 Vitamin K-dependent gamma-carboxylase LysR_substrate PF03466.20 gi|336252308|ref|YP_004595415.1| - 0.0011 18.4 1.1 0.0027 17.1 0.0 2.2 3 0 0 3 3 3 1 LysR substrate binding domain Flavi_M PF01004.19 gi|336252308|ref|YP_004595415.1| - 0.063 13.0 0.0 0.17 11.7 0.0 1.7 1 0 0 1 1 1 0 Flavivirus envelope glycoprotein M Inositol_P PF00459.25 gi|336252309|ref|YP_004595416.1| - 1.4e-56 192.1 0.7 1.6e-56 191.9 0.7 1.0 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.20 gi|336252309|ref|YP_004595416.1| - 0.021 14.3 0.0 0.03 13.8 0.0 1.2 1 0 0 1 1 1 0 Fructose-1-6-bisphosphatase, N-terminal domain DUF63 PF01889.17 gi|336252310|ref|YP_004595417.1| - 1e-33 117.7 12.0 1.4e-31 110.7 9.1 3.1 2 1 0 2 2 2 1 Membrane protein of unknown function DUF63 DUF2206 PF09971.9 gi|336252310|ref|YP_004595417.1| - 0.06 12.1 1.1 0.081 11.7 0.3 1.6 1 1 0 1 1 1 0 Predicted membrane protein (DUF2206) AA_permease_2 PF13520.6 gi|336252311|ref|YP_004595418.1| - 3.9e-45 154.4 42.9 5e-45 154.1 42.9 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|336252311|ref|YP_004595418.1| - 4e-41 141.1 39.0 5.4e-41 140.7 39.0 1.1 1 0 0 1 1 1 1 Amino acid permease Usp PF00582.26 gi|336252311|ref|YP_004595418.1| - 1.2e-19 71.2 15.4 7.5e-11 42.7 0.7 3.7 3 1 0 3 3 3 2 Universal stress protein family Spore_permease PF03845.13 gi|336252311|ref|YP_004595418.1| - 2.4e-05 23.3 11.6 2.4e-05 23.3 11.6 2.3 2 1 0 2 2 2 1 Spore germination protein MIG-14_Wnt-bd PF06664.12 gi|336252311|ref|YP_004595418.1| - 0.14 11.4 6.5 0.33 10.1 6.5 1.6 1 0 0 1 1 1 0 Wnt-binding factor required for Wnt secretion DUF3810 PF12725.7 gi|336252311|ref|YP_004595418.1| - 0.62 9.4 2.9 2.9 7.2 0.0 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF3810) AA_permease_C PF13906.6 gi|336252311|ref|YP_004595418.1| - 1.1 9.3 7.9 1.1 9.4 4.7 2.7 2 0 0 2 2 2 0 C-terminus of AA_permease DUF5373 PF17343.2 gi|336252311|ref|YP_004595418.1| - 8.5 6.2 8.4 0.26 11.1 2.1 1.6 2 0 0 2 2 2 0 Family of unknown function (DUF5373) AA_permease_2 PF13520.6 gi|336252312|ref|YP_004595419.1| - 8.8e-45 153.3 43.4 1.1e-44 152.9 43.4 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|336252312|ref|YP_004595419.1| - 4.7e-37 127.7 39.6 6.2e-37 127.3 39.6 1.1 1 0 0 1 1 1 1 Amino acid permease Usp PF00582.26 gi|336252312|ref|YP_004595419.1| - 9.6e-23 81.3 8.7 3e-10 40.8 3.5 3.2 2 1 0 2 2 2 2 Universal stress protein family AA_permease_C PF13906.6 gi|336252312|ref|YP_004595419.1| - 0.0074 16.3 3.7 0.0074 16.3 3.7 2.6 3 0 0 3 3 3 1 C-terminus of AA_permease BNR_4 PF15892.5 gi|336252313|ref|YP_004595420.1| - 6.2e-87 291.4 1.4 1.1e-86 290.6 1.4 1.4 1 0 0 1 1 1 1 BNR repeat-containing family member Usp PF00582.26 gi|336252315|ref|YP_004595422.1| - 7.3e-23 81.6 0.2 7.3e-23 81.6 0.2 1.5 2 0 0 2 2 2 1 Universal stress protein family HTH_10 PF04967.12 gi|336252316|ref|YP_004595423.1| - 1.1e-17 63.5 0.1 1.9e-17 62.8 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|336252316|ref|YP_004595423.1| - 3.5e-11 43.2 0.4 3.5e-11 43.2 0.4 1.8 2 0 0 2 2 2 1 GAF and HTH_10 associated domain Sigma70_r4 PF04545.16 gi|336252316|ref|YP_004595423.1| - 0.00022 20.7 0.2 0.00054 19.4 0.2 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 MarR_2 PF12802.7 gi|336252316|ref|YP_004595423.1| - 0.0014 18.5 1.0 0.0044 16.9 0.6 2.0 2 0 0 2 2 2 1 MarR family HTH_AsnC-type PF13404.6 gi|336252316|ref|YP_004595423.1| - 0.024 14.5 0.7 0.054 13.3 0.7 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|336252316|ref|YP_004595423.1| - 0.026 14.1 0.2 0.047 13.3 0.2 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Arg_decarbox_C PF17944.1 gi|336252316|ref|YP_004595423.1| - 0.055 14.0 0.2 14 6.3 0.0 3.1 3 0 0 3 3 3 0 Arginine decarboxylase C-terminal helical extension Sigma70_r4_2 PF08281.12 gi|336252316|ref|YP_004595423.1| - 0.081 12.6 0.3 6.8 6.5 0.0 2.3 2 0 0 2 2 2 0 Sigma-70, region 4 UPF0122 PF04297.14 gi|336252316|ref|YP_004595423.1| - 0.17 12.1 0.0 0.32 11.3 0.0 1.3 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like Nop PF01798.18 gi|336252317|ref|YP_004595424.1| - 1.4e-40 139.2 0.0 2.3e-40 138.5 0.0 1.3 1 0 0 1 1 1 1 snoRNA binding domain, fibrillarin HutP PF09021.11 gi|336252317|ref|YP_004595424.1| - 0.023 15.0 0.1 0.39 11.0 0.0 2.2 2 0 0 2 2 2 0 HutP Fibrillarin PF01269.17 gi|336252318|ref|YP_004595425.1| - 2.2e-53 180.7 0.0 2.6e-53 180.5 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin RTP1_C2 PF10304.9 gi|336252318|ref|YP_004595425.1| - 0.86 9.4 3.5 8.5 6.2 1.8 3.2 3 1 0 3 3 3 0 Required for nuclear transport of RNA pol II C-terminus 2 Trp_oprn_chp PF09534.10 gi|336252319|ref|YP_004595426.1| - 0.0031 17.3 0.5 0.0055 16.5 0.5 1.4 1 0 0 1 1 1 1 Tryptophan-associated transmembrane protein (Trp_oprn_chp) PAS_7 PF12860.7 gi|336252319|ref|YP_004595426.1| - 0.016 15.4 0.1 0.029 14.5 0.1 1.4 1 0 0 1 1 1 0 PAS fold Attachment_P66 PF11263.8 gi|336252319|ref|YP_004595426.1| - 0.57 9.4 3.3 1.7 7.9 1.8 2.0 2 0 0 2 2 2 0 Borrelia burgdorferi attachment protein P66 DUF5422 PF17459.2 gi|336252320|ref|YP_004595427.1| - 0.059 13.5 1.0 0.059 13.5 1.0 2.4 1 1 0 2 2 2 0 Family of unknown function (DUF5422) GCS2 PF04107.13 gi|336252321|ref|YP_004595428.1| - 3.5e-78 262.9 0.3 4.1e-78 262.7 0.3 1.0 1 0 0 1 1 1 1 Glutamate-cysteine ligase family 2(GCS2) Amidoligase_2 PF12224.8 gi|336252321|ref|YP_004595428.1| - 0.081 12.6 0.7 12 5.5 0.0 2.6 2 1 0 2 2 2 0 Putative amidoligase enzyme GCS PF03074.16 gi|336252321|ref|YP_004595428.1| - 0.12 11.7 0.0 0.19 11.0 0.0 1.2 1 0 0 1 1 1 0 Glutamate-cysteine ligase p6 PF17548.2 gi|336252322|ref|YP_004595429.1| - 0.16 11.9 0.1 0.6 10.1 0.0 1.9 2 0 0 2 2 2 0 Histone-like Protein p6 DNA_ligase_IV PF11411.8 gi|336252322|ref|YP_004595429.1| - 2.1 8.6 4.6 11 6.3 1.2 2.7 2 0 0 2 2 2 0 DNA ligase IV Amino_oxidase PF01593.24 gi|336252323|ref|YP_004595430.1| - 3.3e-23 82.7 1.6 5.7e-23 81.9 1.6 1.4 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|336252323|ref|YP_004595430.1| - 1.5e-14 53.9 0.8 3.2e-14 52.9 0.3 1.9 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|336252323|ref|YP_004595430.1| - 3e-10 39.8 3.8 6.3e-08 32.1 2.2 2.2 2 0 0 2 2 2 2 FAD binding domain DAO PF01266.24 gi|336252323|ref|YP_004595430.1| - 5.3e-10 39.4 6.9 5.3e-10 39.4 6.9 2.8 2 2 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|336252323|ref|YP_004595430.1| - 3.7e-09 36.2 0.3 1.4e-06 27.7 0.3 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|336252323|ref|YP_004595430.1| - 9.3e-07 27.9 0.4 1.8e-05 23.6 0.7 2.1 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_3 PF01494.19 gi|336252323|ref|YP_004595430.1| - 1.6e-06 27.6 0.8 2.8e-06 26.8 0.8 1.4 1 0 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.7 gi|336252323|ref|YP_004595430.1| - 2.1e-06 27.3 0.4 3.5e-06 26.6 0.4 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|336252323|ref|YP_004595430.1| - 2.7e-06 27.8 0.2 3.9e-05 24.1 0.8 2.5 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase MCRA PF06100.11 gi|336252323|ref|YP_004595430.1| - 3.4e-06 26.2 0.0 0.22 10.2 0.0 3.2 3 0 0 3 3 3 3 MCRA family Thi4 PF01946.17 gi|336252323|ref|YP_004595430.1| - 3e-05 23.4 0.6 4.6e-05 22.8 0.6 1.2 1 0 0 1 1 1 1 Thi4 family Lycopene_cycl PF05834.12 gi|336252323|ref|YP_004595430.1| - 0.0025 16.9 0.6 0.0046 16.1 0.6 1.4 1 0 0 1 1 1 1 Lycopene cyclase protein GIDA PF01134.22 gi|336252323|ref|YP_004595430.1| - 0.0056 15.8 2.1 0.0066 15.6 1.2 1.5 2 0 0 2 2 2 1 Glucose inhibited division protein A TetR_C_16 PF17920.1 gi|336252323|ref|YP_004595430.1| - 0.018 15.2 0.9 0.38 11.0 0.0 3.1 3 0 0 3 3 3 0 Tetracyclin repressor-like, C-terminal domain AlaDh_PNT_C PF01262.21 gi|336252323|ref|YP_004595430.1| - 0.022 14.1 1.2 0.033 13.5 1.2 1.2 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox_3 PF13738.6 gi|336252323|ref|YP_004595430.1| - 0.029 13.6 0.5 0.047 12.9 0.5 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 gi|336252323|ref|YP_004595430.1| - 0.038 12.8 0.5 0.061 12.2 0.5 1.3 1 0 0 1 1 1 0 Tryptophan halogenase NAD_binding_9 PF13454.6 gi|336252323|ref|YP_004595430.1| - 0.13 12.2 2.6 0.44 10.5 0.7 2.5 3 0 0 3 3 3 0 FAD-NAD(P)-binding Usp PF00582.26 gi|336252324|ref|YP_004595431.1| - 5.3e-35 121.0 0.8 6e-35 120.8 0.8 1.0 1 0 0 1 1 1 1 Universal stress protein family TauE PF01925.19 gi|336252325|ref|YP_004595432.1| - 4.3e-29 101.8 43.2 5.4e-29 101.5 43.2 1.1 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE AI-2E_transport PF01594.16 gi|336252326|ref|YP_004595433.1| - 5.2e-35 121.1 28.6 6.4e-35 120.8 28.6 1.0 1 0 0 1 1 1 1 AI-2E family transporter Nramp PF01566.18 gi|336252327|ref|YP_004595434.1| - 2.7e-34 118.7 25.9 2.7e-34 118.7 25.9 1.5 1 1 0 1 1 1 1 Natural resistance-associated macrophage protein DNA_gyraseB PF00204.25 gi|336252328|ref|YP_004595435.1| - 4.4e-62 208.6 1.5 8.8e-62 207.6 1.5 1.5 1 0 0 1 1 1 1 DNA gyrase B DNA_gyraseB_C PF00986.21 gi|336252328|ref|YP_004595435.1| - 2.9e-29 101.0 0.0 5.9e-29 100.0 0.0 1.5 1 0 0 1 1 1 1 DNA gyrase B subunit, carboxyl terminus HATPase_c PF02518.26 gi|336252328|ref|YP_004595435.1| - 8.8e-24 84.2 0.1 2.8e-23 82.6 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Toprim PF01751.22 gi|336252328|ref|YP_004595435.1| - 4.6e-18 65.3 0.0 1.3e-17 63.9 0.0 1.8 1 0 0 1 1 1 1 Toprim domain HATPase_c_3 PF13589.6 gi|336252328|ref|YP_004595435.1| - 0.0017 18.2 0.0 0.0035 17.2 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DNA_topoisoIV PF00521.20 gi|336252329|ref|YP_004595436.1| - 1e-156 522.2 0.0 1.2e-156 521.9 0.0 1.1 1 0 0 1 1 1 1 DNA gyrase/topoisomerase IV, subunit A DNA_gyraseA_C PF03989.13 gi|336252329|ref|YP_004595436.1| - 5.5e-77 253.1 14.9 5.4e-14 51.4 0.2 6.4 6 0 0 6 6 6 6 DNA gyrase C-terminal domain, beta-propeller IKI3 PF04762.12 gi|336252329|ref|YP_004595436.1| - 0.0022 16.1 0.2 0.0097 14.0 0.0 2.0 1 1 0 2 2 2 1 IKI3 family DUF745 PF05335.13 gi|336252329|ref|YP_004595436.1| - 0.063 13.0 3.8 0.11 12.2 3.8 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF745) HrcA_DNA-bdg PF03444.15 gi|336252330|ref|YP_004595437.1| - 7.9e-37 124.8 0.1 1.1e-36 124.3 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Rrf2 PF02082.20 gi|336252330|ref|YP_004595437.1| - 1.1e-08 35.3 0.0 1.9e-08 34.6 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator HTH_11 PF08279.12 gi|336252330|ref|YP_004595437.1| - 1.4e-06 28.2 0.0 2.2e-06 27.5 0.0 1.3 1 0 0 1 1 1 1 HTH domain TrmB PF01978.19 gi|336252330|ref|YP_004595437.1| - 0.026 14.4 0.0 0.047 13.6 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|336252330|ref|YP_004595437.1| - 0.033 14.2 0.0 0.065 13.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Put_DNA-bind_N PF06971.13 gi|336252330|ref|YP_004595437.1| - 0.065 13.3 0.0 0.12 12.4 0.0 1.4 1 0 0 1 1 1 0 Putative DNA-binding protein N-terminus HTH_24 PF13412.6 gi|336252330|ref|YP_004595437.1| - 0.074 12.6 0.3 0.16 11.5 0.3 1.6 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding Fe_dep_repr_C PF02742.15 gi|336252331|ref|YP_004595438.1| - 1.7e-28 98.5 0.7 3.3e-28 97.6 0.7 1.5 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.19 gi|336252331|ref|YP_004595438.1| - 2.7e-20 72.3 0.4 6e-20 71.2 0.4 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain FeoA PF04023.14 gi|336252331|ref|YP_004595438.1| - 6.9e-13 48.7 0.7 2.1e-12 47.1 0.1 2.0 2 0 0 2 2 2 1 FeoA domain MarR PF01047.22 gi|336252331|ref|YP_004595438.1| - 4.6e-09 36.1 0.0 9.5e-09 35.1 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|336252331|ref|YP_004595438.1| - 1.5e-08 34.4 0.0 5.1e-08 32.7 0.0 1.9 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|336252331|ref|YP_004595438.1| - 5.6e-07 29.0 0.2 1.2e-06 27.9 0.0 1.7 2 0 0 2 2 1 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|336252331|ref|YP_004595438.1| - 9.3e-06 25.5 0.1 2e-05 24.5 0.1 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain DUF2250 PF10007.9 gi|336252331|ref|YP_004595438.1| - 3.8e-05 23.7 0.2 8.5e-05 22.6 0.1 1.5 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) TrmB PF01978.19 gi|336252331|ref|YP_004595438.1| - 4e-05 23.4 0.0 9.2e-05 22.3 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|336252331|ref|YP_004595438.1| - 4e-05 23.9 0.1 9.6e-05 22.7 0.1 1.7 1 0 0 1 1 1 1 Transcriptional regulator GntR PF00392.21 gi|336252331|ref|YP_004595438.1| - 7.3e-05 22.3 0.0 0.00019 21.0 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_27 PF13463.6 gi|336252331|ref|YP_004595438.1| - 9.3e-05 22.8 0.2 0.00024 21.6 0.2 1.7 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_IclR PF09339.10 gi|336252331|ref|YP_004595438.1| - 0.00013 21.7 0.0 0.0006 19.6 0.0 2.2 2 0 0 2 2 1 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|336252331|ref|YP_004595438.1| - 0.00014 21.9 0.0 0.002 18.1 0.0 2.7 3 1 0 3 3 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|336252331|ref|YP_004595438.1| - 0.00016 21.5 0.0 0.00047 20.0 0.0 1.8 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HrcA_DNA-bdg PF03444.15 gi|336252331|ref|YP_004595438.1| - 0.0018 17.9 0.0 0.0032 17.1 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_11 PF08279.12 gi|336252331|ref|YP_004595438.1| - 0.0026 17.7 0.1 0.0048 16.8 0.1 1.4 1 0 0 1 1 1 1 HTH domain Penicillinase_R PF03965.16 gi|336252331|ref|YP_004595438.1| - 0.0028 18.0 0.1 0.006 16.9 0.1 1.6 1 0 0 1 1 1 1 Penicillinase repressor HTH_12 PF08461.10 gi|336252331|ref|YP_004595438.1| - 0.0036 17.2 0.2 0.0097 15.8 0.2 1.8 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_1 PF00126.27 gi|336252331|ref|YP_004595438.1| - 0.0049 16.8 0.0 0.015 15.2 0.0 1.8 1 1 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HxlR PF01638.17 gi|336252331|ref|YP_004595438.1| - 0.0084 15.9 0.1 0.019 14.8 0.1 1.7 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_23 PF13384.6 gi|336252331|ref|YP_004595438.1| - 0.0088 15.8 0.0 0.059 13.2 0.0 2.4 2 1 1 3 3 3 1 Homeodomain-like domain HTH_45 PF14947.6 gi|336252331|ref|YP_004595438.1| - 0.012 15.5 0.0 0.018 15.0 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix FeoC PF09012.10 gi|336252331|ref|YP_004595438.1| - 0.014 15.5 0.0 0.03 14.4 0.0 1.5 1 0 0 1 1 1 0 FeoC like transcriptional regulator DUF4423 PF14394.6 gi|336252331|ref|YP_004595438.1| - 0.025 14.3 0.0 0.039 13.7 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) Topoisom_bac PF01131.20 gi|336252331|ref|YP_004595438.1| - 0.025 13.6 0.0 0.042 12.9 0.0 1.3 1 0 0 1 1 1 0 DNA topoisomerase Put_DNA-bind_N PF06971.13 gi|336252331|ref|YP_004595438.1| - 0.029 14.4 0.0 0.081 13.0 0.0 1.8 1 0 0 1 1 1 0 Putative DNA-binding protein N-terminus HTH_AsnC-type PF13404.6 gi|336252331|ref|YP_004595438.1| - 0.074 12.9 0.1 0.18 11.6 0.0 1.8 2 0 0 2 2 1 0 AsnC-type helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|336252331|ref|YP_004595438.1| - 0.077 12.8 0.0 0.42 10.4 0.0 2.1 2 0 0 2 2 2 0 LexA DNA binding domain HTH_13 PF11972.8 gi|336252331|ref|YP_004595438.1| - 0.082 13.0 0.0 0.18 11.9 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain HTH_Tnp_ISL3 PF13542.6 gi|336252331|ref|YP_004595438.1| - 0.11 11.9 0.2 40 3.7 0.0 3.5 4 0 0 4 4 4 0 Helix-turn-helix domain of transposase family ISL3 HTH_10 PF04967.12 gi|336252331|ref|YP_004595438.1| - 0.17 11.7 0.0 0.34 10.7 0.0 1.5 1 0 0 1 1 1 0 HTH DNA binding domain Arginase PF00491.21 gi|336252332|ref|YP_004595439.1| - 9.7e-77 258.2 2.2 1.1e-76 258.0 2.2 1.0 1 0 0 1 1 1 1 Arginase family Pyr_redox_2 PF07992.14 gi|336252333|ref|YP_004595440.1| - 1.5e-41 142.6 0.1 1.8e-41 142.3 0.1 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|336252333|ref|YP_004595440.1| - 8.6e-10 39.0 0.7 3.1e-08 34.1 0.0 2.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|336252333|ref|YP_004595440.1| - 0.00021 21.3 1.1 0.73 9.8 0.0 3.1 3 0 0 3 3 3 2 FAD-NAD(P)-binding Spore_SspJ PF09575.10 gi|336252333|ref|YP_004595440.1| - 0.25 11.8 4.0 1.1 9.6 0.1 3.2 3 0 0 3 3 3 0 Small spore protein J (Spore_SspJ) Hexapep_2 PF14602.6 gi|336252334|ref|YP_004595441.1| - 8.5e-08 31.8 4.7 4.3e-07 29.6 0.4 2.7 3 0 0 3 3 3 2 Hexapeptide repeat of succinyl-transferase Hexapep PF00132.24 gi|336252334|ref|YP_004595441.1| - 2.5e-07 30.2 0.3 2.5e-07 30.2 0.3 2.9 4 0 0 4 4 4 1 Bacterial transferase hexapeptide (six repeats) Nmad3 PF18754.1 gi|336252335|ref|YP_004595442.1| - 5.3e-36 124.5 0.0 6.1e-36 124.3 0.0 1.0 1 0 0 1 1 1 1 Nucleotide modification associated domain 3 TraW_N PF12477.8 gi|336252335|ref|YP_004595442.1| - 0.17 11.8 0.3 0.33 10.9 0.3 1.4 1 0 0 1 1 1 0 Sex factor F TraW protein N terminal TruB_N PF01509.18 gi|336252338|ref|YP_004595445.1| - 3.9e-21 76.0 0.3 9.4e-13 48.8 0.0 3.2 1 1 1 2 2 2 2 TruB family pseudouridylate synthase (N terminal domain) TruB_C_2 PF16198.5 gi|336252338|ref|YP_004595445.1| - 2.3e-18 66.1 0.0 4.5e-18 65.2 0.0 1.5 1 0 0 1 1 1 1 tRNA pseudouridylate synthase B C-terminal domain PUA PF01472.20 gi|336252338|ref|YP_004595445.1| - 1.5e-09 37.7 0.2 2.9e-09 36.8 0.2 1.4 1 0 0 1 1 1 1 PUA domain DKCLD PF08068.12 gi|336252338|ref|YP_004595445.1| - 1.1e-08 35.1 0.1 2.1e-08 34.1 0.1 1.5 1 0 0 1 1 1 1 DKCLD (NUC011) domain DUF3701 PF12482.8 gi|336252338|ref|YP_004595445.1| - 0.0042 17.1 0.1 0.012 15.7 0.0 1.8 2 0 0 2 2 2 1 Phage integrase protein Cytidylate_kin2 PF13189.6 gi|336252339|ref|YP_004595446.1| - 2.7e-21 76.5 0.3 3.4e-19 69.7 0.3 2.0 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.6 gi|336252339|ref|YP_004595446.1| - 1.4e-16 61.3 0.1 1.7e-16 60.9 0.1 1.1 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|336252339|ref|YP_004595446.1| - 4.3e-13 49.8 0.0 7.4e-13 49.1 0.0 1.5 1 1 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.18 gi|336252339|ref|YP_004595446.1| - 1.1e-09 38.3 0.5 0.00027 20.8 0.0 2.1 1 1 1 2 2 2 2 Cytidylate kinase ADK PF00406.22 gi|336252339|ref|YP_004595446.1| - 2.3e-07 31.0 0.0 5e-07 29.9 0.0 1.5 1 1 0 1 1 1 1 Adenylate kinase AAA_33 PF13671.6 gi|336252339|ref|YP_004595446.1| - 1.3e-06 28.7 0.2 1.2e-05 25.5 0.2 2.0 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|336252339|ref|YP_004595446.1| - 0.00051 20.3 0.1 0.0015 18.8 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|336252339|ref|YP_004595446.1| - 0.0022 18.4 0.9 0.0035 17.8 0.9 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|336252339|ref|YP_004595446.1| - 0.0034 17.6 0.0 0.0056 17.0 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|336252339|ref|YP_004595446.1| - 0.0074 16.7 0.0 0.011 16.1 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) SKI PF01202.22 gi|336252339|ref|YP_004595446.1| - 0.0096 16.1 0.5 0.077 13.1 0.5 2.1 1 1 0 1 1 1 1 Shikimate kinase KTI12 PF08433.10 gi|336252339|ref|YP_004595446.1| - 0.024 14.1 0.0 0.032 13.7 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 Thymidylate_kin PF02223.17 gi|336252339|ref|YP_004595446.1| - 0.024 14.3 0.1 5 6.8 0.0 2.4 2 1 1 3 3 3 0 Thymidylate kinase Zeta_toxin PF06414.12 gi|336252339|ref|YP_004595446.1| - 0.027 13.7 0.0 0.07 12.4 0.0 1.7 2 0 0 2 2 2 0 Zeta toxin AAA_30 PF13604.6 gi|336252339|ref|YP_004595446.1| - 0.054 13.2 0.3 0.71 9.6 0.1 2.2 1 1 1 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|336252339|ref|YP_004595446.1| - 0.059 13.8 0.0 0.093 13.1 0.0 1.3 1 0 0 1 1 1 0 RNA helicase AAA_5 PF07728.14 gi|336252339|ref|YP_004595446.1| - 0.063 13.3 0.0 0.1 12.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) dNK PF01712.19 gi|336252339|ref|YP_004595446.1| - 0.083 12.7 0.0 0.21 11.4 0.0 1.7 2 0 0 2 2 2 0 Deoxynucleoside kinase ABC_tran PF00005.27 gi|336252339|ref|YP_004595446.1| - 0.16 12.5 0.0 0.21 12.1 0.0 1.4 1 1 0 1 1 1 0 ABC transporter Rad17 PF03215.15 gi|336252339|ref|YP_004595446.1| - 0.18 11.7 0.0 0.27 11.2 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain EMC3_TMCO1 PF01956.16 gi|336252340|ref|YP_004595447.1| - 7.7e-41 139.7 3.8 1.1e-40 139.2 3.8 1.2 1 0 0 1 1 1 1 Integral membrane protein EMC3/TMCO1-like DUF2937 PF11157.8 gi|336252340|ref|YP_004595447.1| - 7.8e-05 22.4 0.3 0.19 11.4 1.4 2.5 1 1 1 2 2 2 2 Protein of unknown function (DUF2937) Pinin_SDK_memA PF04696.13 gi|336252340|ref|YP_004595447.1| - 0.0033 17.5 0.3 0.0055 16.8 0.3 1.4 1 0 0 1 1 1 1 pinin/SDK/memA/ protein conserved region DUF4746 PF15928.5 gi|336252340|ref|YP_004595447.1| - 0.019 14.4 0.3 0.036 13.5 0.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4746) HemX PF04375.14 gi|336252340|ref|YP_004595447.1| - 0.022 14.0 0.4 0.044 13.1 0.4 1.4 1 0 0 1 1 1 0 HemX, putative uroporphyrinogen-III C-methyltransferase Tho2 PF11262.8 gi|336252340|ref|YP_004595447.1| - 0.049 12.8 1.1 0.077 12.2 1.1 1.2 1 0 0 1 1 1 0 Transcription factor/nuclear export subunit protein 2 Golgin_A5 PF09787.9 gi|336252340|ref|YP_004595447.1| - 0.074 12.5 7.9 0.11 11.9 7.9 1.2 1 0 0 1 1 1 0 Golgin subfamily A member 5 60KD_IMP PF02096.20 gi|336252340|ref|YP_004595447.1| - 0.081 12.8 8.9 5.9 6.8 8.9 2.3 1 1 0 1 1 1 0 60Kd inner membrane protein T3SS_needle_F PF09392.10 gi|336252340|ref|YP_004595447.1| - 0.13 12.5 1.7 1.2 9.4 0.2 3.0 2 1 2 4 4 4 0 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF DUF4407 PF14362.6 gi|336252340|ref|YP_004595447.1| - 0.2 11.0 1.0 0.36 10.1 1.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) DUF4175 PF13779.6 gi|336252340|ref|YP_004595447.1| - 0.22 9.4 8.8 0.4 8.5 8.8 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4175) DUF4199 PF13858.6 gi|336252340|ref|YP_004595447.1| - 0.54 10.6 8.9 0.97 9.8 7.1 2.4 1 1 0 1 1 1 0 Protein of unknown function (DUF4199) MIF4G_like_2 PF09090.11 gi|336252340|ref|YP_004595447.1| - 0.58 9.6 5.3 0.42 10.1 2.7 1.8 2 0 0 2 2 2 0 MIF4G like CCDC-167 PF15188.6 gi|336252340|ref|YP_004595447.1| - 0.86 10.0 5.0 0.37 11.2 1.3 2.1 2 0 0 2 2 2 0 Coiled-coil domain-containing protein 167 Helo_like_N PF17111.5 gi|336252340|ref|YP_004595447.1| - 0.94 8.8 4.0 0.78 9.1 2.2 1.6 2 0 0 2 2 2 0 Fungal N-terminal domain of STAND proteins Remorin_C PF03763.13 gi|336252340|ref|YP_004595447.1| - 1 9.3 10.6 0.22 11.4 6.8 1.8 2 0 0 2 2 2 0 Remorin, C-terminal region Stevor PF17410.2 gi|336252340|ref|YP_004595447.1| - 1.6 8.2 3.7 2.9 7.4 3.7 1.3 1 0 0 1 1 1 0 Subtelomeric Variable Open Reading frame ABC_tran_CTD PF16326.5 gi|336252340|ref|YP_004595447.1| - 3.4 8.0 16.4 0.46 10.8 3.4 2.9 3 0 0 3 3 3 0 ABC transporter C-terminal domain Latarcin PF10279.9 gi|336252340|ref|YP_004595447.1| - 4.6 7.7 13.4 3.7 8.0 7.6 2.9 2 1 1 3 3 3 0 Latarcin precursor Ntox1 PF15500.6 gi|336252340|ref|YP_004595447.1| - 6.6 7.2 6.3 2.4 8.5 3.1 1.8 2 0 0 2 2 2 0 Putative RNase-like toxin, toxin_1 VWA PF00092.28 gi|336252341|ref|YP_004595448.1| - 3.3e-18 66.5 1.1 1.1e-17 64.8 1.1 1.9 1 1 0 1 1 1 1 von Willebrand factor type A domain VWA_2 PF13519.6 gi|336252341|ref|YP_004595448.1| - 5.3e-11 43.1 0.1 1.2e-10 42.0 0.1 1.6 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_3 PF13768.6 gi|336252341|ref|YP_004595448.1| - 0.00022 21.2 0.0 0.00084 19.3 0.0 2.0 1 1 0 1 1 1 1 von Willebrand factor type A domain Pilin_N PF07790.11 gi|336252341|ref|YP_004595448.1| - 0.0024 18.7 2.6 0.0044 17.9 1.3 2.2 2 0 0 2 2 2 1 Archaeal Type IV pilin, N-terminal VWA_CoxE PF05762.14 gi|336252341|ref|YP_004595448.1| - 0.014 14.8 0.2 0.57 9.5 0.0 2.2 2 0 0 2 2 2 0 VWA domain containing CoxE-like protein Bactofilin PF04519.13 gi|336252341|ref|YP_004595448.1| - 0.026 14.8 7.3 0.81 10.0 0.1 3.7 2 1 1 3 3 3 0 Polymer-forming cytoskeletal Bactofilin PF04519.13 gi|336252342|ref|YP_004595449.1| - 0.24 11.7 2.8 26 5.2 0.0 3.4 3 0 0 3 3 3 0 Polymer-forming cytoskeletal ADK PF00406.22 gi|336252343|ref|YP_004595450.1| - 5.3e-46 156.5 0.0 6.5e-46 156.2 0.0 1.1 1 0 0 1 1 1 1 Adenylate kinase AAA_17 PF13207.6 gi|336252343|ref|YP_004595450.1| - 4e-24 85.6 0.7 9.8e-24 84.3 0.1 1.8 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|336252343|ref|YP_004595450.1| - 4.7e-08 33.6 0.1 1.3e-07 32.2 0.0 1.7 1 1 1 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|336252343|ref|YP_004595450.1| - 1.7e-05 25.0 0.1 0.00098 19.3 0.0 2.5 1 1 2 3 3 3 1 AAA domain PduV-EutP PF10662.9 gi|336252343|ref|YP_004595450.1| - 0.0062 16.3 0.0 0.01 15.6 0.0 1.3 1 0 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation Thymidylate_kin PF02223.17 gi|336252343|ref|YP_004595450.1| - 0.012 15.3 3.3 12 5.5 0.3 3.1 3 0 0 3 3 3 0 Thymidylate kinase ADK_lid PF05191.14 gi|336252343|ref|YP_004595450.1| - 0.023 14.7 0.3 0.11 12.5 0.3 2.1 1 1 0 1 1 1 0 Adenylate kinase, active site lid Zeta_toxin PF06414.12 gi|336252343|ref|YP_004595450.1| - 0.076 12.3 0.1 0.19 11.0 0.1 1.8 1 1 0 1 1 1 0 Zeta toxin Ploopntkinase3 PF18751.1 gi|336252343|ref|YP_004595450.1| - 0.11 12.4 0.0 0.21 11.5 0.0 1.5 1 0 0 1 1 1 0 P-loop Nucleotide Kinase3 dNK PF01712.19 gi|336252343|ref|YP_004595450.1| - 0.16 11.8 1.2 6.3 6.6 0.0 2.8 2 1 1 3 3 3 0 Deoxynucleoside kinase COX2 PF00116.20 gi|336252345|ref|YP_004595452.1| - 8.3e-16 58.0 0.0 1.8e-15 56.9 0.0 1.5 2 0 0 2 2 2 1 Cytochrome C oxidase subunit II, periplasmic domain DUF5048 PF16467.5 gi|336252345|ref|YP_004595452.1| - 0.008 16.4 0.0 0.02 15.2 0.0 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF5048) FixH PF05751.11 gi|336252345|ref|YP_004595452.1| - 0.017 15.1 0.3 0.32 11.0 0.1 2.3 2 0 0 2 2 2 0 FixH Cupredoxin_1 PF13473.6 gi|336252345|ref|YP_004595452.1| - 0.023 14.8 0.0 0.29 11.3 0.0 2.4 2 1 0 2 2 2 0 Cupredoxin-like domain UL2 PF08196.11 gi|336252345|ref|YP_004595452.1| - 0.15 12.0 0.2 0.46 10.5 0.0 1.9 2 0 0 2 2 2 0 UL2 protein COX1 PF00115.20 gi|336252346|ref|YP_004595453.1| - 2e-124 415.7 77.8 2e-124 415.7 77.8 3.0 2 1 1 3 3 3 1 Cytochrome C and Quinol oxidase polypeptide I COX3 PF00510.18 gi|336252346|ref|YP_004595453.1| - 6.4e-20 72.1 20.4 6.4e-20 72.1 20.4 3.1 3 0 0 3 3 3 1 Cytochrome c oxidase subunit III Peptidase_S8 PF00082.22 gi|336252347|ref|YP_004595454.1| - 4.7e-47 160.7 2.8 1e-46 159.6 2.8 1.6 1 0 0 1 1 1 1 Subtilase family Blo-t-5 PF11642.8 gi|336252347|ref|YP_004595454.1| - 0.23 11.4 0.0 0.38 10.7 0.0 1.2 1 0 0 1 1 1 0 Mite allergen Blo t 5 TPPK_C PF12555.8 gi|336252347|ref|YP_004595454.1| - 1.5 8.9 4.7 1.2 9.2 0.1 2.7 2 0 0 2 2 2 0 Thiamine pyrophosphokinase C terminal COX4_pro PF03626.14 gi|336252348|ref|YP_004595455.1| - 3.3e-07 30.6 11.0 4e-07 30.4 11.0 1.1 1 0 0 1 1 1 1 Prokaryotic Cytochrome C oxidase subunit IV DUF4793 PF16041.5 gi|336252348|ref|YP_004595455.1| - 0.26 11.5 0.4 0.26 11.5 0.4 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4793) AAA_14 PF13173.6 gi|336252349|ref|YP_004595456.1| - 6.5e-12 45.6 0.0 1e-11 45.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain DUF4143 PF13635.6 gi|336252349|ref|YP_004595456.1| - 1.5e-06 28.4 0.0 3e-06 27.4 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4143) AAA_19 PF13245.6 gi|336252349|ref|YP_004595456.1| - 0.0013 19.0 0.0 0.0034 17.7 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|336252349|ref|YP_004595456.1| - 0.0026 17.4 0.0 0.022 14.3 0.0 2.3 2 0 0 2 2 2 1 AAA domain DUF853 PF05872.12 gi|336252349|ref|YP_004595456.1| - 0.0041 15.8 0.0 0.0065 15.1 0.0 1.2 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF853) NACHT PF05729.12 gi|336252349|ref|YP_004595456.1| - 0.0045 16.9 0.0 0.0085 16.0 0.0 1.4 1 0 0 1 1 1 1 NACHT domain HTH_Mga PF08280.11 gi|336252349|ref|YP_004595456.1| - 0.0067 16.4 0.1 0.015 15.3 0.1 1.5 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_11 PF08279.12 gi|336252349|ref|YP_004595456.1| - 0.0093 15.9 0.0 0.026 14.5 0.0 1.7 1 0 0 1 1 1 1 HTH domain AAA_30 PF13604.6 gi|336252349|ref|YP_004595456.1| - 0.013 15.2 0.0 0.03 14.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|336252349|ref|YP_004595456.1| - 0.015 15.7 0.1 0.059 13.7 0.1 2.1 1 1 0 1 1 1 0 AAA ATPase domain UvrD-helicase PF00580.21 gi|336252349|ref|YP_004595456.1| - 0.04 13.4 0.0 0.068 12.7 0.0 1.3 1 0 0 1 1 1 0 UvrD/REP helicase N-terminal domain Viral_helicase1 PF01443.18 gi|336252349|ref|YP_004595456.1| - 0.048 13.4 0.0 0.08 12.7 0.0 1.4 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase AAA_22 PF13401.6 gi|336252349|ref|YP_004595456.1| - 0.062 13.6 0.0 0.86 9.9 0.0 2.2 1 1 0 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|336252349|ref|YP_004595456.1| - 0.071 12.3 0.0 0.12 11.5 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain ResIII PF04851.15 gi|336252349|ref|YP_004595456.1| - 0.077 13.0 0.0 0.81 9.7 0.0 2.1 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit RNA_helicase PF00910.22 gi|336252349|ref|YP_004595456.1| - 0.1 13.0 0.0 0.76 10.2 0.0 2.2 2 0 0 2 2 2 0 RNA helicase Zeta_toxin PF06414.12 gi|336252349|ref|YP_004595456.1| - 0.11 11.8 0.0 0.2 10.9 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA PF00004.29 gi|336252349|ref|YP_004595456.1| - 0.11 13.0 0.0 0.21 12.0 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) T2SSE PF00437.20 gi|336252349|ref|YP_004595456.1| - 0.15 11.1 0.0 0.25 10.4 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein RuvB_C PF05491.13 gi|336252349|ref|YP_004595456.1| - 0.15 11.9 0.0 0.36 10.7 0.0 1.6 1 0 0 1 1 1 0 RuvB C-terminal winged helix domain FtsK_SpoIIIE PF01580.18 gi|336252349|ref|YP_004595456.1| - 0.19 11.0 0.0 0.35 10.2 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family DUF2075 PF09848.9 gi|336252349|ref|YP_004595456.1| - 0.23 10.7 0.0 0.37 10.0 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Metallophos PF00149.28 gi|336252350|ref|YP_004595457.1| - 8e-14 52.6 0.6 1.4e-13 51.9 0.6 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|336252350|ref|YP_004595457.1| - 6.2e-08 33.0 5.7 6.5e-08 32.9 2.1 2.4 2 1 0 2 2 2 1 Calcineurin-like phosphoesterase superfamily domain HGTP_anticodon PF03129.20 gi|336252350|ref|YP_004595457.1| - 0.027 14.6 0.2 0.3 11.3 0.0 2.2 2 0 0 2 2 2 0 Anticodon binding domain AAA_23 PF13476.6 gi|336252351|ref|YP_004595458.1| - 8.6e-17 62.3 18.2 8.6e-17 62.3 18.2 8.1 1 1 4 5 5 1 1 AAA domain AAA_15 PF13175.6 gi|336252351|ref|YP_004595458.1| - 1.4e-10 41.5 2.6 1.4e-10 41.5 2.6 4.2 2 2 1 3 3 1 1 AAA ATPase domain Spc7 PF08317.11 gi|336252351|ref|YP_004595458.1| - 2e-09 36.8 128.5 0.0013 17.7 13.4 6.9 3 2 4 7 7 7 5 Spc7 kinetochore protein AAA_27 PF13514.6 gi|336252351|ref|YP_004595458.1| - 1.1e-07 31.6 0.2 1.1e-07 31.6 0.2 6.6 5 3 4 9 9 9 1 AAA domain MscS_porin PF12795.7 gi|336252351|ref|YP_004595458.1| - 2.3e-07 30.6 111.5 0.0039 16.8 22.6 7.0 2 2 5 7 7 7 4 Mechanosensitive ion channel porin domain AAA_29 PF13555.6 gi|336252351|ref|YP_004595458.1| - 4.1e-07 29.6 0.0 8.1e-07 28.7 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SbcCD_C PF13558.6 gi|336252351|ref|YP_004595458.1| - 4.7e-07 30.0 0.0 1.5e-06 28.3 0.0 1.9 1 0 0 1 1 1 1 Putative exonuclease SbcCD, C subunit TPR_MLP1_2 PF07926.12 gi|336252351|ref|YP_004595458.1| - 7.5e-07 29.3 142.2 0.0003 20.9 8.7 10.4 3 2 6 10 10 9 5 TPR/MLP1/MLP2-like protein FliJ PF02050.16 gi|336252351|ref|YP_004595458.1| - 4e-05 23.8 91.9 0.13 12.5 1.8 9.1 3 2 6 10 10 10 6 Flagellar FliJ protein Atg14 PF10186.9 gi|336252351|ref|YP_004595458.1| - 0.00018 20.7 87.5 0.041 13.0 9.2 7.0 2 2 4 6 6 6 5 Vacuolar sorting 38 and autophagy-related subunit 14 AAA_13 PF13166.6 gi|336252351|ref|YP_004595458.1| - 0.00028 19.7 99.7 0.0091 14.7 10.8 6.3 2 1 3 6 6 6 2 AAA domain CENP-F_leu_zip PF10473.9 gi|336252351|ref|YP_004595458.1| - 0.00034 20.7 11.0 0.00034 20.7 11.0 8.2 2 2 7 9 9 7 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Exonuc_VII_L PF02601.15 gi|336252351|ref|YP_004595458.1| - 0.00035 20.2 62.8 0.02 14.4 2.8 5.4 1 1 2 3 3 2 1 Exonuclease VII, large subunit Prefoldin_2 PF01920.20 gi|336252351|ref|YP_004595458.1| - 0.00071 19.5 9.1 0.00071 19.5 9.1 13.6 5 3 5 12 12 12 2 Prefoldin subunit Filament PF00038.21 gi|336252351|ref|YP_004595458.1| - 0.0017 18.0 123.0 0.15 11.7 9.0 7.7 1 1 5 6 6 6 3 Intermediate filament protein Fib_alpha PF08702.10 gi|336252351|ref|YP_004595458.1| - 0.0029 17.8 2.3 0.0029 17.8 2.3 8.4 5 2 3 9 9 7 1 Fibrinogen alpha/beta chain family MukB PF04310.12 gi|336252351|ref|YP_004595458.1| - 0.0033 17.3 1.9 0.018 14.8 0.0 3.2 2 0 0 2 2 2 1 MukB N-terminal EzrA PF06160.12 gi|336252351|ref|YP_004595458.1| - 0.004 15.4 100.7 0.072 11.3 13.2 6.4 2 2 3 5 5 5 4 Septation ring formation regulator, EzrA AAA_21 PF13304.6 gi|336252351|ref|YP_004595458.1| - 0.004 17.0 1.8 0.004 17.0 1.8 3.9 2 2 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 gi|336252351|ref|YP_004595458.1| - 0.0082 16.1 0.3 0.058 13.3 0.0 2.7 2 0 0 2 2 1 1 RsgA GTPase RNA_helicase PF00910.22 gi|336252351|ref|YP_004595458.1| - 0.021 15.2 0.4 0.47 10.9 0.0 2.8 2 1 0 2 2 2 0 RNA helicase Allexi_40kDa PF05549.11 gi|336252351|ref|YP_004595458.1| - 0.021 14.3 0.3 0.021 14.3 0.3 6.9 2 2 6 8 8 8 0 Allexivirus 40kDa protein V-SNARE_C PF12352.8 gi|336252351|ref|YP_004595458.1| - 0.025 14.9 0.0 0.025 14.9 0.0 4.6 6 1 0 6 6 2 0 Snare region anchored in the vesicle membrane C-terminus DUF4407 PF14362.6 gi|336252351|ref|YP_004595458.1| - 0.037 13.4 114.1 0.079 12.3 17.5 6.1 1 1 5 6 6 6 0 Domain of unknown function (DUF4407) DUF724 PF05266.14 gi|336252351|ref|YP_004595458.1| - 0.16 11.8 96.2 0.027 14.3 11.3 7.8 2 2 6 9 9 8 0 Protein of unknown function (DUF724) AAA_22 PF13401.6 gi|336252351|ref|YP_004595458.1| - 0.26 11.6 0.0 0.26 11.6 0.0 4.8 4 2 0 4 4 2 0 AAA domain AAA PF00004.29 gi|336252351|ref|YP_004595458.1| - 0.4 11.1 0.0 0.4 11.1 0.0 4.5 5 1 0 5 5 3 0 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 gi|336252351|ref|YP_004595458.1| - 0.47 10.6 0.0 0.47 10.6 0.0 5.4 4 2 3 7 7 7 0 AAA domain DUF3450 PF11932.8 gi|336252351|ref|YP_004595458.1| - 0.61 9.4 110.1 0.072 12.4 4.0 8.4 2 2 5 8 8 8 0 Protein of unknown function (DUF3450) Fusion_gly PF00523.18 gi|336252351|ref|YP_004595458.1| - 0.61 8.3 5.8 0.17 10.1 0.6 2.7 2 1 1 3 3 3 0 Fusion glycoprotein F0 Baculo_PEP_C PF04513.12 gi|336252351|ref|YP_004595458.1| - 0.74 9.9 39.9 0.087 12.9 4.0 8.6 3 2 2 8 8 8 0 Baculovirus polyhedron envelope protein, PEP, C terminus Fez1 PF06818.15 gi|336252351|ref|YP_004595458.1| - 1.3 9.5 112.8 0.67 10.4 16.6 7.2 1 1 7 8 8 8 0 Fez1 Laminin_II PF06009.12 gi|336252351|ref|YP_004595458.1| - 1.7 8.7 74.3 0.014 15.4 5.1 8.6 4 2 6 10 10 9 0 Laminin Domain II GAS PF13851.6 gi|336252351|ref|YP_004595458.1| - 2.9 7.2 103.6 0.067 12.5 8.5 7.4 3 2 3 7 7 7 0 Growth-arrest specific micro-tubule binding DUF1664 PF07889.12 gi|336252351|ref|YP_004595458.1| - 4.1 7.4 74.7 0.7 9.9 7.2 9.7 3 2 7 10 10 9 0 Protein of unknown function (DUF1664) ABC_tran PF00005.27 gi|336252351|ref|YP_004595458.1| - 4.9 7.7 38.4 0.0078 16.7 11.3 6.6 3 2 0 3 3 1 0 ABC transporter DUF4201 PF13870.6 gi|336252351|ref|YP_004595458.1| - 7.4 6.3 86.4 1.4 8.6 2.8 8.5 3 2 1 6 6 6 0 Domain of unknown function (DUF4201) DUF87 PF01935.17 gi|336252353|ref|YP_004595460.1| - 7.1e-07 29.6 0.0 1.7e-06 28.3 0.0 1.6 2 0 0 2 2 2 1 Helicase HerA, central domain DUF853 PF05872.12 gi|336252353|ref|YP_004595460.1| - 0.00013 20.7 0.4 0.0027 16.4 0.0 2.1 2 0 0 2 2 2 1 Bacterial protein of unknown function (DUF853) AAA_10 PF12846.7 gi|336252353|ref|YP_004595460.1| - 0.00037 19.5 0.0 0.0073 15.3 0.0 2.2 2 0 0 2 2 2 1 AAA-like domain FtsK_SpoIIIE PF01580.18 gi|336252353|ref|YP_004595460.1| - 0.021 14.2 0.0 0.29 10.5 0.0 2.1 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_22 PF13401.6 gi|336252353|ref|YP_004595460.1| - 0.038 14.3 0.0 1.7 8.9 0.0 2.3 2 0 0 2 2 2 0 AAA domain Zot PF05707.12 gi|336252353|ref|YP_004595460.1| - 0.062 12.9 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 Zonular occludens toxin (Zot) PLDc_2 PF13091.6 gi|336252354|ref|YP_004595461.1| - 7.2e-07 29.2 0.0 1.7e-06 28.0 0.0 1.6 1 0 0 1 1 1 1 PLD-like domain RE_NgoFVII PF09565.10 gi|336252354|ref|YP_004595461.1| - 0.0023 17.3 0.0 0.0037 16.6 0.0 1.3 1 0 0 1 1 1 1 NgoFVII restriction endonuclease AAA_16 PF13191.6 gi|336252354|ref|YP_004595461.1| - 0.0074 16.7 0.0 0.06 13.7 0.0 2.5 2 0 0 2 2 2 1 AAA ATPase domain Tyr-DNA_phospho PF06087.12 gi|336252354|ref|YP_004595461.1| - 0.015 14.2 0.0 0.025 13.5 0.0 1.4 1 0 0 1 1 1 0 Tyrosyl-DNA phosphodiesterase AAA PF00004.29 gi|336252354|ref|YP_004595461.1| - 0.041 14.3 1.1 3.9 7.9 0.0 3.2 3 1 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|336252354|ref|YP_004595461.1| - 0.045 14.0 0.0 0.22 11.8 0.0 2.2 2 0 0 2 2 2 0 AAA domain Piwi PF02171.17 gi|336252355|ref|YP_004595462.1| - 1.5e-15 57.2 0.0 2.7e-15 56.4 0.0 1.3 1 0 0 1 1 1 1 Piwi domain Phage_integrase PF00589.22 gi|336252357|ref|YP_004595464.1| - 3.8e-29 101.7 0.1 6.1e-29 101.0 0.1 1.3 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.17 gi|336252357|ref|YP_004595464.1| - 0.0083 16.4 0.0 0.023 15.0 0.0 1.8 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Ribosomal_L2 PF00181.23 gi|336252357|ref|YP_004595464.1| - 0.03 14.3 0.2 0.25 11.3 0.0 2.2 2 0 0 2 2 2 0 Ribosomal Proteins L2, RNA binding domain DUF4238 PF14022.6 gi|336252367|ref|YP_004595474.1| - 5.1e-43 147.6 0.0 6e-43 147.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF4238) CARD_2 PF16739.5 gi|336252367|ref|YP_004595474.1| - 0.13 12.2 0.1 0.25 11.3 0.1 1.5 1 0 0 1 1 1 0 Caspase recruitment domain Resolvase PF00239.21 gi|336252369|ref|YP_004595476.1| - 2.9e-25 89.1 0.2 4.4e-25 88.5 0.2 1.3 1 0 0 1 1 1 1 Resolvase, N terminal domain HTH_23 PF13384.6 gi|336252369|ref|YP_004595476.1| - 9.1e-05 22.1 0.1 0.00024 20.8 0.1 1.7 1 0 0 1 1 1 1 Homeodomain-like domain Ketoacyl-synt_C PF02801.22 gi|336252369|ref|YP_004595476.1| - 0.05 13.6 0.0 0.1 12.6 0.0 1.5 1 0 0 1 1 1 0 Beta-ketoacyl synthase, C-terminal domain DUF3006 PF11213.8 gi|336252370|ref|YP_004595477.1| - 0.025 14.8 0.0 0.033 14.4 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3006) ParBc PF02195.18 gi|336252374|ref|YP_004595481.1| - 4.5e-10 39.7 0.1 9.6e-10 38.6 0.1 1.6 1 0 0 1 1 1 1 ParB-like nuclease domain N6_N4_Mtase PF01555.18 gi|336252374|ref|YP_004595481.1| - 8.9e-05 22.3 0.5 0.00024 20.9 0.0 2.0 2 0 0 2 2 2 1 DNA methylase Nop14 PF04147.12 gi|336252374|ref|YP_004595481.1| - 0.0033 15.7 21.3 0.0046 15.3 21.3 1.1 1 0 0 1 1 1 1 Nop14-like family Methyltransf_11 PF08241.12 gi|336252374|ref|YP_004595481.1| - 0.0063 17.1 0.2 1.8 9.3 0.1 2.9 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|336252374|ref|YP_004595481.1| - 0.052 14.3 0.1 12 6.7 0.0 3.7 4 0 0 4 4 4 0 Methyltransferase domain UPF0020 PF01170.18 gi|336252374|ref|YP_004595481.1| - 0.055 13.1 0.1 3.2 7.4 0.0 2.4 2 0 0 2 2 2 0 Putative RNA methylase family UPF0020 DUF1819 PF08849.11 gi|336252375|ref|YP_004595482.1| - 3.5e-05 23.7 0.0 6.3e-05 22.9 0.0 1.4 1 1 0 1 1 1 1 Putative inner membrane protein (DUF1819) DUF3645 PF12359.8 gi|336252375|ref|YP_004595482.1| - 0.15 11.5 0.1 0.26 10.7 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3645) ABC_tran PF00005.27 gi|336252376|ref|YP_004595483.1| - 0.06 13.9 0.0 0.21 12.1 0.0 1.9 1 0 0 1 1 1 0 ABC transporter HWE_HK PF07536.14 gi|336252376|ref|YP_004595483.1| - 1.2 9.9 3.2 9.4 7.0 0.4 3.1 3 0 0 3 3 3 0 HWE histidine kinase DUF1788 PF08747.11 gi|336252377|ref|YP_004595484.1| - 2.1e-14 53.6 0.0 2.8e-14 53.2 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1788) EIIA-man PF03610.16 gi|336252377|ref|YP_004595484.1| - 0.0018 18.5 0.0 0.0028 17.9 0.0 1.3 1 0 0 1 1 1 1 PTS system fructose IIA component Tautomerase PF01361.21 gi|336252377|ref|YP_004595484.1| - 0.11 12.5 0.4 0.32 10.9 0.3 1.8 2 0 0 2 2 2 0 Tautomerase enzyme AAA_22 PF13401.6 gi|336252378|ref|YP_004595485.1| - 0.0032 17.7 0.1 7.3 6.9 0.0 4.1 3 1 0 3 3 3 2 AAA domain AAA_21 PF13304.6 gi|336252378|ref|YP_004595485.1| - 0.04 13.7 0.3 1.6 8.5 0.0 2.9 2 0 0 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system SKA2 PF16740.5 gi|336252378|ref|YP_004595485.1| - 0.087 12.6 0.0 2.2 8.1 0.0 3.2 2 0 0 2 2 2 0 Spindle and kinetochore-associated protein 2 DUF948 PF06103.11 gi|336252378|ref|YP_004595485.1| - 0.2 12.0 0.8 2.7 8.3 0.1 3.1 3 0 0 3 3 3 0 Bacterial protein of unknown function (DUF948) PaaB PF06243.11 gi|336252379|ref|YP_004595486.1| - 0.02 15.1 0.0 0.042 14.1 0.0 1.5 1 0 0 1 1 1 0 Phenylacetic acid degradation B TrmB PF01978.19 gi|336252380|ref|YP_004595487.1| - 4.8e-16 58.4 0.6 7.1e-07 29.0 0.0 2.5 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|336252380|ref|YP_004595487.1| - 9.2e-16 57.5 0.7 1.5e-08 34.4 0.3 2.5 2 0 0 2 2 2 2 MarR family MarR PF01047.22 gi|336252380|ref|YP_004595487.1| - 3.4e-13 49.3 0.1 2.5e-05 24.1 0.0 2.4 2 0 0 2 2 2 2 MarR family HTH_IclR PF09339.10 gi|336252380|ref|YP_004595487.1| - 4.7e-11 42.3 2.9 3.4e-06 26.8 0.1 2.9 3 0 0 3 3 3 2 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|336252380|ref|YP_004595487.1| - 5.9e-10 38.9 0.3 5.4e-05 23.0 0.0 2.5 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|336252380|ref|YP_004595487.1| - 6.3e-10 38.5 0.1 0.00089 18.8 0.0 2.5 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding Fe_dep_repress PF01325.19 gi|336252380|ref|YP_004595487.1| - 6.4e-10 39.1 1.1 0.00061 19.9 0.3 2.6 2 0 0 2 2 2 2 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.20 gi|336252380|ref|YP_004595487.1| - 6.9e-09 35.9 0.4 0.00077 19.8 0.0 2.4 2 0 0 2 2 2 2 Transcriptional regulator HTH_11 PF08279.12 gi|336252380|ref|YP_004595487.1| - 1.2e-08 34.7 0.1 6.4e-05 22.8 0.0 2.7 2 0 0 2 2 2 2 HTH domain HTH_20 PF12840.7 gi|336252380|ref|YP_004595487.1| - 4.7e-08 33.0 1.8 0.0024 17.9 0.0 2.5 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|336252380|ref|YP_004595487.1| - 2.7e-07 30.5 0.8 0.00041 20.3 0.0 3.0 3 0 0 3 3 3 1 Crp-like helix-turn-helix domain HTH_27 PF13463.6 gi|336252380|ref|YP_004595487.1| - 4.6e-07 30.2 0.7 0.0054 17.2 0.2 2.5 2 0 0 2 2 2 2 Winged helix DNA-binding domain HTH_29 PF13551.6 gi|336252380|ref|YP_004595487.1| - 6.9e-06 26.0 0.2 0.0082 16.1 0.1 2.7 2 0 0 2 2 2 1 Winged helix-turn helix GntR PF00392.21 gi|336252380|ref|YP_004595487.1| - 8.5e-06 25.3 0.3 0.032 13.9 0.0 3.1 3 0 0 3 3 3 2 Bacterial regulatory proteins, gntR family HTH_28 PF13518.6 gi|336252380|ref|YP_004595487.1| - 0.00026 21.0 0.2 0.14 12.3 0.0 3.0 3 0 0 3 3 2 1 Helix-turn-helix domain Penicillinase_R PF03965.16 gi|336252380|ref|YP_004595487.1| - 0.00052 20.4 0.0 0.28 11.5 0.0 2.5 2 0 0 2 2 2 1 Penicillinase repressor HTH_23 PF13384.6 gi|336252380|ref|YP_004595487.1| - 0.00098 18.9 0.2 1.9 8.4 0.0 2.7 2 0 0 2 2 2 2 Homeodomain-like domain DUF4423 PF14394.6 gi|336252380|ref|YP_004595487.1| - 0.0021 17.8 0.1 2.3 7.9 0.1 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF4423) HTH_45 PF14947.6 gi|336252380|ref|YP_004595487.1| - 0.0042 17.0 0.0 0.03 14.3 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix HTH_1 PF00126.27 gi|336252380|ref|YP_004595487.1| - 0.0052 16.7 0.9 0.25 11.3 0.2 2.5 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_AsnC-type PF13404.6 gi|336252380|ref|YP_004595487.1| - 0.008 16.0 2.3 0.073 12.9 0.1 2.7 3 0 0 3 3 2 1 AsnC-type helix-turn-helix domain DUF2250 PF10007.9 gi|336252380|ref|YP_004595487.1| - 0.0083 16.2 0.1 3 8.0 0.1 2.6 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) PaaX PF07848.12 gi|336252380|ref|YP_004595487.1| - 0.016 15.4 0.1 7.7 6.8 0.0 2.5 2 0 0 2 2 2 0 PaaX-like protein HTH_10 PF04967.12 gi|336252380|ref|YP_004595487.1| - 0.021 14.6 0.0 3.5 7.5 0.0 3.0 3 0 0 3 3 3 0 HTH DNA binding domain HTH_DeoR PF08220.12 gi|336252380|ref|YP_004595487.1| - 0.022 14.5 0.0 0.092 12.5 0.0 2.1 2 0 0 2 2 1 0 DeoR-like helix-turn-helix domain FeoC PF09012.10 gi|336252380|ref|YP_004595487.1| - 0.029 14.4 0.4 0.19 11.8 0.1 2.3 3 0 0 3 3 2 0 FeoC like transcriptional regulator HTH_17 PF12728.7 gi|336252380|ref|YP_004595487.1| - 0.048 13.8 0.2 5.3 7.3 0.0 3.1 3 0 0 3 3 2 0 Helix-turn-helix domain HTH_38 PF13936.6 gi|336252380|ref|YP_004595487.1| - 0.055 13.2 0.0 1.8 8.4 0.0 2.8 3 0 0 3 3 3 0 Helix-turn-helix domain Phage_rep_org_N PF09681.10 gi|336252380|ref|YP_004595487.1| - 0.061 13.2 0.0 0.99 9.3 0.0 2.1 2 0 0 2 2 2 0 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_7 PF02796.15 gi|336252380|ref|YP_004595487.1| - 0.064 13.3 0.0 0.4 10.8 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase YdaS_antitoxin PF15943.5 gi|336252380|ref|YP_004595487.1| - 0.065 13.1 0.1 17 5.4 0.0 3.0 3 0 0 3 3 3 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT z-alpha PF02295.17 gi|336252380|ref|YP_004595487.1| - 0.094 12.8 0.0 0.35 10.9 0.0 2.0 2 0 0 2 2 1 0 Adenosine deaminase z-alpha domain HTH_CodY PF08222.11 gi|336252380|ref|YP_004595487.1| - 0.11 12.1 0.0 6.9 6.3 0.0 2.3 2 0 0 2 2 2 0 CodY helix-turn-helix domain Phage_rep_O PF04492.13 gi|336252380|ref|YP_004595487.1| - 0.11 13.1 0.0 0.55 10.8 0.0 2.1 2 0 0 2 2 2 0 Bacteriophage replication protein O LexA_DNA_bind PF01726.16 gi|336252380|ref|YP_004595487.1| - 0.13 12.0 0.0 1.7 8.5 0.0 2.4 2 0 0 2 2 2 0 LexA DNA binding domain SpoIIID PF12116.8 gi|336252380|ref|YP_004595487.1| - 0.15 12.1 0.0 0.8 9.8 0.0 2.2 2 1 1 3 3 1 0 Stage III sporulation protein D DUF903 PF06004.12 gi|336252380|ref|YP_004595487.1| - 0.18 11.7 0.1 2 8.3 0.0 2.2 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF903) NTP_transf_5 PF14907.6 gi|336252381|ref|YP_004595488.1| - 0.0025 17.5 0.8 0.0079 15.8 0.1 2.0 1 1 1 2 2 2 1 Uncharacterised nucleotidyltransferase Glyoxalase PF00903.25 gi|336252381|ref|YP_004595488.1| - 0.0051 17.0 0.1 0.078 13.2 0.0 2.5 2 2 1 3 3 3 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Rio2_N PF09202.11 gi|336252381|ref|YP_004595488.1| - 0.13 12.5 0.3 0.89 9.8 0.1 2.2 2 0 0 2 2 2 0 Rio2, N-terminal Phi-29_GP16_7 PF06720.11 gi|336252381|ref|YP_004595488.1| - 0.43 10.4 6.1 0.4 10.5 2.3 2.6 1 1 2 3 3 3 0 Bacteriophage phi-29 early protein GP16.7 YkuI_C PF10388.9 gi|336252382|ref|YP_004595489.1| - 0.026 14.3 0.0 0.045 13.6 0.0 1.3 1 0 0 1 1 1 0 EAL-domain associated signalling protein domain HNH_repeat PF18780.1 gi|336252383|ref|YP_004595490.1| - 1.1e-05 25.1 0.4 0.0031 17.3 0.0 2.3 2 0 0 2 2 2 2 Homing endonuclease repeat DUF3018 PF11455.8 gi|336252383|ref|YP_004595490.1| - 0.024 14.6 0.4 0.21 11.5 0.2 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3018) Sigma70_r3 PF04539.16 gi|336252383|ref|YP_004595490.1| - 0.17 12.0 1.1 19 5.4 0.1 2.3 2 0 0 2 2 2 0 Sigma-70 region 3 NucS PF01939.16 gi|336252384|ref|YP_004595491.1| - 4.2e-05 23.0 0.0 7.5e-05 22.2 0.0 1.3 1 0 0 1 1 1 1 Endonuclease NucS DUF4868 PF16162.5 gi|336252385|ref|YP_004595492.1| - 2.2e-19 70.1 0.3 3.4e-19 69.5 0.3 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4868) Pox_A31 PF05771.11 gi|336252385|ref|YP_004595492.1| - 0.076 13.0 0.7 0.62 10.1 0.1 2.4 2 1 0 2 2 2 0 Poxvirus A31 protein N6_Mtase PF02384.16 gi|336252387|ref|YP_004595494.1| - 4.4e-10 39.3 0.0 3e-05 23.4 0.0 3.1 3 0 0 3 3 3 2 N-6 DNA Methylase Methyltransf_31 PF13847.6 gi|336252387|ref|YP_004595494.1| - 0.003 17.4 0.1 0.009 15.8 0.1 1.8 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.18 gi|336252387|ref|YP_004595494.1| - 0.0072 16.0 0.0 0.22 11.2 0.0 2.4 2 0 0 2 2 2 1 Putative RNA methylase family UPF0020 PSK_trans_fac PF07704.11 gi|336252388|ref|YP_004595495.1| - 0.34 11.7 1.8 0.54 11.1 0.7 1.8 2 0 0 2 2 2 0 Rv0623-like transcription factor AAA PF00004.29 gi|336252389|ref|YP_004595496.1| - 6.5e-42 143.1 0.0 1.4e-41 142.0 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|336252389|ref|YP_004595496.1| - 9.4e-07 28.5 0.1 2.6e-06 27.1 0.1 1.8 1 0 0 1 1 1 1 AAA+ lid domain RuvB_N PF05496.12 gi|336252389|ref|YP_004595496.1| - 1e-05 25.4 0.0 1.9e-05 24.4 0.0 1.4 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_2 PF07724.14 gi|336252389|ref|YP_004595496.1| - 1.2e-05 25.5 0.0 2.4e-05 24.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_16 PF13191.6 gi|336252389|ref|YP_004595496.1| - 5.7e-05 23.6 0.2 0.0012 19.3 0.2 2.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_18 PF13238.6 gi|336252389|ref|YP_004595496.1| - 0.002 18.7 0.0 0.01 16.4 0.0 2.2 1 1 1 2 2 2 1 AAA domain AAA_5 PF07728.14 gi|336252389|ref|YP_004595496.1| - 0.0031 17.5 0.2 0.065 13.2 0.0 3.0 3 1 0 3 3 3 1 AAA domain (dynein-related subfamily) RNA_helicase PF00910.22 gi|336252389|ref|YP_004595496.1| - 0.005 17.2 0.0 0.011 16.1 0.0 1.6 1 0 0 1 1 1 1 RNA helicase TIP49 PF06068.13 gi|336252389|ref|YP_004595496.1| - 0.0068 15.6 0.0 0.011 14.9 0.0 1.3 1 0 0 1 1 1 1 TIP49 P-loop domain AAA_22 PF13401.6 gi|336252389|ref|YP_004595496.1| - 0.01 16.1 0.1 0.48 10.7 0.0 2.5 1 1 1 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|336252389|ref|YP_004595496.1| - 0.01 16.0 0.0 0.021 15.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|336252389|ref|YP_004595496.1| - 0.033 13.9 0.0 0.068 12.9 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_3 PF07726.11 gi|336252389|ref|YP_004595496.1| - 0.053 13.4 0.0 0.13 12.2 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|336252389|ref|YP_004595496.1| - 0.056 13.2 0.0 0.11 12.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|336252389|ref|YP_004595496.1| - 0.058 13.1 0.0 0.13 12.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|336252389|ref|YP_004595496.1| - 0.071 13.0 0.0 5.1 6.9 0.0 2.2 1 1 1 2 2 2 0 ATPase domain predominantly from Archaea AAA_11 PF13086.6 gi|336252389|ref|YP_004595496.1| - 0.1 12.4 0.0 0.16 11.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain Thymidylate_kin PF02223.17 gi|336252389|ref|YP_004595496.1| - 0.11 12.2 0.0 11 5.6 0.0 2.4 1 1 1 2 2 2 0 Thymidylate kinase PglZ PF08665.12 gi|336252390|ref|YP_004595497.1| - 1.4e-09 38.3 0.0 2.8e-09 37.3 0.0 1.5 1 0 0 1 1 1 1 PglZ domain Helicase_C PF00271.31 gi|336252392|ref|YP_004595499.1| - 8.7e-23 80.8 0.0 2.1e-22 79.6 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain SNF2_N PF00176.23 gi|336252392|ref|YP_004595499.1| - 2.9e-18 65.7 0.0 2.6e-16 59.3 0.0 2.4 1 1 1 2 2 2 1 SNF2 family N-terminal domain ResIII PF04851.15 gi|336252392|ref|YP_004595499.1| - 7.2e-12 45.6 0.0 2.1e-11 44.1 0.0 1.9 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|336252392|ref|YP_004595499.1| - 1.5e-05 24.8 0.0 4e-05 23.5 0.0 1.7 1 0 0 1 1 1 1 DEAD/DEAH box helicase RapA_C PF12137.8 gi|336252392|ref|YP_004595499.1| - 0.00024 20.3 0.1 0.00024 20.3 0.1 2.7 2 0 0 2 2 2 1 RNA polymerase recycling family C-terminal Helicase_C_4 PF13871.6 gi|336252392|ref|YP_004595499.1| - 0.00088 19.0 0.0 0.098 12.3 0.0 2.4 2 0 0 2 2 2 1 C-terminal domain on Strawberry notch homologue AAA_34 PF13872.6 gi|336252392|ref|YP_004595499.1| - 0.0034 16.3 0.6 0.017 14.1 0.6 1.9 1 1 0 1 1 1 1 P-loop containing NTP hydrolase pore-1 DUF2075 PF09848.9 gi|336252392|ref|YP_004595499.1| - 0.076 12.2 3.2 0.078 12.2 0.0 2.6 4 0 0 4 4 4 0 Uncharacterized conserved protein (DUF2075) KxDL PF10241.9 gi|336252392|ref|YP_004595499.1| - 0.33 11.3 1.9 9.1 6.6 1.6 2.9 2 0 0 2 2 2 0 Uncharacterized conserved protein Exonuc_VII_L PF02601.15 gi|336252392|ref|YP_004595499.1| - 7.2 6.1 11.0 0.35 10.4 2.4 2.8 3 1 0 3 3 3 0 Exonuclease VII, large subunit Atg14 PF10186.9 gi|336252392|ref|YP_004595499.1| - 8.5 5.4 7.4 23 3.9 7.4 1.7 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 Metallophos PF00149.28 gi|336252394|ref|YP_004595501.1| - 1.5e-13 51.7 0.7 7.5e-13 49.4 0.1 2.2 3 0 0 3 3 3 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|336252394|ref|YP_004595501.1| - 7.8e-08 32.7 2.0 1.7e-07 31.6 2.1 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain RIG-I_C-RD PF11648.8 gi|336252395|ref|YP_004595502.1| - 0.008 16.4 0.1 0.014 15.6 0.1 1.4 1 0 0 1 1 1 1 C-terminal domain of RIG-I ESSS PF10183.9 gi|336252395|ref|YP_004595502.1| - 0.086 13.1 1.7 0.54 10.5 0.0 2.4 2 0 0 2 2 2 0 ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) Lar_restr_allev PF14354.6 gi|336252397|ref|YP_004595504.1| - 0.0029 17.9 0.8 0.0041 17.5 0.8 1.3 1 0 0 1 1 1 1 Restriction alleviation protein Lar DinB PF05163.12 gi|336252397|ref|YP_004595504.1| - 0.029 14.3 0.2 0.032 14.2 0.2 1.0 1 0 0 1 1 1 0 DinB family zf-C2H2_3 PF13878.6 gi|336252397|ref|YP_004595504.1| - 0.08 12.8 1.6 0.16 11.8 0.1 2.0 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO Zn_Tnp_IS91 PF14319.6 gi|336252397|ref|YP_004595504.1| - 0.15 12.1 4.9 0.22 11.6 3.2 1.8 1 1 1 2 2 2 0 Transposase zinc-binding domain Zn-ribbon_8 PF09723.10 gi|336252397|ref|YP_004595504.1| - 6.2 7.0 6.8 2.7 8.2 2.5 2.3 2 2 0 2 2 2 0 Zinc ribbon domain Anti-TRAP PF15777.5 gi|336252398|ref|YP_004595505.1| - 0.0071 16.3 0.9 0.0078 16.2 0.9 1.1 1 0 0 1 1 1 1 Tryptophan RNA-binding attenuator protein inhibitory protein ScdA_N PF04405.14 gi|336252400|ref|YP_004595507.1| - 0.0052 16.4 0.2 0.14 11.8 0.0 2.7 3 0 0 3 3 3 1 Domain of Unknown function (DUF542) TcdB_N PF12918.7 gi|336252400|ref|YP_004595507.1| - 0.038 14.3 0.1 0.32 11.3 0.1 2.2 2 0 0 2 2 2 0 TcdB toxin N-terminal helical domain DUF2205 PF10224.9 gi|336252400|ref|YP_004595507.1| - 0.075 13.0 0.9 0.075 13.0 0.9 2.3 2 0 0 2 2 2 0 Short coiled-coil protein Rrf2 PF02082.20 gi|336252400|ref|YP_004595507.1| - 0.1 13.0 0.0 1.3 9.4 0.0 2.3 2 0 0 2 2 2 0 Transcriptional regulator HTH_Tnp_1 PF01527.20 gi|336252400|ref|YP_004595507.1| - 0.38 11.1 0.0 0.38 11.1 0.0 3.5 3 2 0 3 3 3 0 Transposase Arm-DNA-bind_5 PF17293.2 gi|336252400|ref|YP_004595507.1| - 0.45 11.0 6.1 0.11 13.0 1.5 2.1 2 0 0 2 2 2 0 Arm DNA-binding domain DUF4140 PF13600.6 gi|336252400|ref|YP_004595507.1| - 1.3 9.5 6.8 7 7.2 0.8 2.6 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) CALCOCO1 PF07888.11 gi|336252401|ref|YP_004595508.1| - 7.8e-06 25.0 12.3 1.1e-05 24.6 12.3 1.1 1 0 0 1 1 1 1 Calcium binding and coiled-coil domain (CALCOCO1) like ATG16 PF08614.11 gi|336252401|ref|YP_004595508.1| - 6.6e-05 23.2 10.5 9e-05 22.8 10.5 1.2 1 0 0 1 1 1 1 Autophagy protein 16 (ATG16) TPR_MLP1_2 PF07926.12 gi|336252401|ref|YP_004595508.1| - 0.00037 20.6 9.6 0.00037 20.6 9.6 1.7 1 1 0 1 1 1 1 TPR/MLP1/MLP2-like protein FapA PF03961.13 gi|336252401|ref|YP_004595508.1| - 0.00049 18.8 1.1 0.00059 18.6 1.1 1.1 1 0 0 1 1 1 1 Flagellar Assembly Protein A DUF4618 PF15397.6 gi|336252401|ref|YP_004595508.1| - 0.00089 18.8 5.8 0.079 12.4 1.1 2.1 1 1 1 2 2 2 2 Domain of unknown function (DUF4618) Fez1 PF06818.15 gi|336252401|ref|YP_004595508.1| - 0.0011 19.5 4.1 0.0013 19.2 4.1 1.2 1 0 0 1 1 1 1 Fez1 IFT57 PF10498.9 gi|336252401|ref|YP_004595508.1| - 0.0017 17.4 7.1 0.0024 16.9 7.1 1.1 1 0 0 1 1 1 1 Intra-flagellar transport protein 57 Snapin_Pallidin PF14712.6 gi|336252401|ref|YP_004595508.1| - 0.0031 17.9 5.6 0.073 13.5 1.1 2.3 1 1 1 2 2 2 1 Snapin/Pallidin HALZ PF02183.18 gi|336252401|ref|YP_004595508.1| - 0.0033 17.6 1.3 0.0078 16.4 1.3 1.7 1 0 0 1 1 1 1 Homeobox associated leucine zipper DUF948 PF06103.11 gi|336252401|ref|YP_004595508.1| - 0.0056 16.9 1.2 0.54 10.5 0.1 2.3 2 0 0 2 2 2 1 Bacterial protein of unknown function (DUF948) T3SSipB PF16535.5 gi|336252401|ref|YP_004595508.1| - 0.0066 16.9 0.4 0.012 16.1 0.4 1.4 1 0 0 1 1 1 1 Type III cell invasion protein SipB bZIP_1 PF00170.21 gi|336252401|ref|YP_004595508.1| - 0.0086 16.1 5.6 0.0086 16.1 5.6 2.4 1 1 1 2 2 2 1 bZIP transcription factor DUF812 PF05667.11 gi|336252401|ref|YP_004595508.1| - 0.0087 15.0 3.9 0.01 14.8 3.9 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF812) Uso1_p115_C PF04871.13 gi|336252401|ref|YP_004595508.1| - 0.011 16.1 11.4 0.017 15.5 11.4 1.4 1 0 0 1 1 1 0 Uso1 / p115 like vesicle tethering protein, C terminal region Sigma70_ner PF04546.13 gi|336252401|ref|YP_004595508.1| - 0.012 15.5 6.9 0.016 15.1 6.9 1.2 1 0 0 1 1 1 0 Sigma-70, non-essential region FlaC_arch PF05377.11 gi|336252401|ref|YP_004595508.1| - 0.018 15.4 11.0 0.4 11.1 2.7 2.4 1 1 1 2 2 2 0 Flagella accessory protein C (FlaC) HAP1_N PF04849.13 gi|336252401|ref|YP_004595508.1| - 0.019 14.2 12.3 0.027 13.7 12.3 1.2 1 0 0 1 1 1 0 HAP1 N-terminal conserved region DUF1043 PF06295.12 gi|336252401|ref|YP_004595508.1| - 0.021 14.8 0.8 0.033 14.2 0.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1043) DUF1664 PF07889.12 gi|336252401|ref|YP_004595508.1| - 0.022 14.8 4.7 0.069 13.2 4.7 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) Tmemb_cc2 PF10267.9 gi|336252401|ref|YP_004595508.1| - 0.025 13.7 6.8 0.032 13.4 6.8 1.2 1 0 0 1 1 1 0 Predicted transmembrane and coiled-coil 2 protein Fmp27_WPPW PF10359.9 gi|336252401|ref|YP_004595508.1| - 0.028 13.3 3.2 0.038 12.8 3.2 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain CENP-F_leu_zip PF10473.9 gi|336252401|ref|YP_004595508.1| - 0.037 14.1 14.5 0.069 13.2 14.5 1.4 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Spc7 PF08317.11 gi|336252401|ref|YP_004595508.1| - 0.041 12.8 12.6 0.059 12.2 12.6 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein HOOK PF05622.12 gi|336252401|ref|YP_004595508.1| - 0.048 11.8 10.3 0.061 11.5 10.3 1.0 1 0 0 1 1 1 0 HOOK protein Jnk-SapK_ap_N PF09744.9 gi|336252401|ref|YP_004595508.1| - 0.05 13.8 15.3 0.1 12.8 15.3 1.5 2 0 0 2 2 1 0 JNK_SAPK-associated protein-1 RmuC PF02646.16 gi|336252401|ref|YP_004595508.1| - 0.063 12.4 5.1 0.2 10.8 3.0 2.0 1 1 1 2 2 2 0 RmuC family YabA PF06156.13 gi|336252401|ref|YP_004595508.1| - 0.064 13.9 10.5 0.13 12.9 8.6 2.1 1 1 1 2 2 2 0 Initiation control protein YabA DUF4337 PF14235.6 gi|336252401|ref|YP_004595508.1| - 0.072 13.2 5.1 0.12 12.5 5.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4337) Prominin PF05478.11 gi|336252401|ref|YP_004595508.1| - 0.075 11.0 4.7 0.42 8.5 4.4 1.7 1 1 1 2 2 2 0 Prominin DUF5082 PF16888.5 gi|336252401|ref|YP_004595508.1| - 0.083 13.2 8.3 0.22 11.8 3.0 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF5082) MbeD_MobD PF04899.12 gi|336252401|ref|YP_004595508.1| - 0.098 12.8 0.8 0.23 11.6 0.8 1.7 1 0 0 1 1 1 0 MbeD/MobD like LMBR1 PF04791.16 gi|336252401|ref|YP_004595508.1| - 0.11 11.4 0.3 0.12 11.3 0.3 1.0 1 0 0 1 1 1 0 LMBR1-like membrane protein DUF4407 PF14362.6 gi|336252401|ref|YP_004595508.1| - 0.12 11.7 4.1 0.17 11.2 4.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) Nup88 PF10168.9 gi|336252401|ref|YP_004595508.1| - 0.14 9.9 5.8 0.18 9.6 5.8 1.0 1 0 0 1 1 1 0 Nuclear pore component HemX PF04375.14 gi|336252401|ref|YP_004595508.1| - 0.15 11.3 5.2 0.23 10.7 5.2 1.2 1 0 0 1 1 1 0 HemX, putative uroporphyrinogen-III C-methyltransferase Sas10_Utp3 PF04000.15 gi|336252401|ref|YP_004595508.1| - 0.16 12.7 1.1 2.7 8.7 0.2 2.3 2 0 0 2 2 2 0 Sas10/Utp3/C1D family Golgin_A5 PF09787.9 gi|336252401|ref|YP_004595508.1| - 0.17 11.3 10.4 0.24 10.8 10.4 1.1 1 0 0 1 1 1 0 Golgin subfamily A member 5 LPP PF04728.13 gi|336252401|ref|YP_004595508.1| - 0.17 12.3 4.0 3.5 8.1 0.6 2.4 2 0 0 2 2 2 0 Lipoprotein leucine-zipper Fungal_TACC PF12709.7 gi|336252401|ref|YP_004595508.1| - 0.18 12.3 9.0 0.058 13.8 5.3 2.0 1 1 1 2 2 2 0 Fungal Transforming acidic coiled-coil (TACC) proteins DUF3734 PF12536.8 gi|336252401|ref|YP_004595508.1| - 0.2 12.0 2.7 3.9 7.8 0.3 2.4 2 0 0 2 2 2 0 Patatin phospholipase Atg14 PF10186.9 gi|336252401|ref|YP_004595508.1| - 0.23 10.5 4.0 0.36 9.9 4.0 1.3 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 DUF2203 PF09969.9 gi|336252401|ref|YP_004595508.1| - 0.31 11.8 6.0 0.69 10.6 5.9 1.6 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) DUF724 PF05266.14 gi|336252401|ref|YP_004595508.1| - 0.33 10.8 7.1 0.54 10.1 7.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF724) HAUS6_N PF14661.6 gi|336252401|ref|YP_004595508.1| - 0.33 10.5 7.6 0.69 9.5 7.6 1.5 1 1 0 1 1 1 0 HAUS augmin-like complex subunit 6 N-terminus AAA_11 PF13086.6 gi|336252401|ref|YP_004595508.1| - 0.34 10.7 3.5 0.44 10.3 3.5 1.1 1 0 0 1 1 1 0 AAA domain V_ATPase_I PF01496.19 gi|336252401|ref|YP_004595508.1| - 0.36 8.7 3.1 0.44 8.4 3.1 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Ax_dynein_light PF10211.9 gi|336252401|ref|YP_004595508.1| - 0.43 10.5 16.4 0.049 13.6 8.5 2.0 1 1 1 2 2 2 0 Axonemal dynein light chain Kre28 PF17097.5 gi|336252401|ref|YP_004595508.1| - 0.44 9.4 9.7 0.59 9.0 9.7 1.1 1 0 0 1 1 1 0 Spindle pole body component Fib_alpha PF08702.10 gi|336252401|ref|YP_004595508.1| - 0.45 10.7 6.2 1.7 8.8 6.3 1.8 1 1 0 1 1 1 0 Fibrinogen alpha/beta chain family DivIC PF04977.15 gi|336252401|ref|YP_004595508.1| - 0.47 10.3 12.1 0.16 11.8 4.6 2.4 1 1 1 2 2 2 0 Septum formation initiator DUF3450 PF11932.8 gi|336252401|ref|YP_004595508.1| - 0.47 9.7 8.5 0.86 8.9 8.5 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3450) COG6 PF06419.11 gi|336252401|ref|YP_004595508.1| - 0.63 8.2 6.3 0.83 7.8 2.2 1.9 1 1 1 2 2 2 0 Conserved oligomeric complex COG6 Fzo_mitofusin PF04799.13 gi|336252401|ref|YP_004595508.1| - 0.64 9.6 7.4 0.67 9.5 2.7 2.1 1 1 0 2 2 2 0 fzo-like conserved region UPF0242 PF06785.11 gi|336252401|ref|YP_004595508.1| - 0.66 10.0 7.4 1.1 9.3 7.4 1.4 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus Occludin_ELL PF07303.13 gi|336252401|ref|YP_004595508.1| - 0.73 10.6 7.0 0.39 11.5 2.1 2.6 3 1 1 4 4 2 0 Occludin homology domain AAA_13 PF13166.6 gi|336252401|ref|YP_004595508.1| - 0.78 8.3 7.3 0.98 8.0 7.3 1.1 1 0 0 1 1 1 0 AAA domain BST2 PF16716.5 gi|336252401|ref|YP_004595508.1| - 0.84 10.3 7.0 9.3 6.9 6.7 2.2 1 1 0 1 1 1 0 Bone marrow stromal antigen 2 KfrA_N PF11740.8 gi|336252401|ref|YP_004595508.1| - 0.87 10.3 7.0 4.5 8.0 5.2 2.5 2 1 0 2 2 2 0 Plasmid replication region DNA-binding N-term ADIP PF11559.8 gi|336252401|ref|YP_004595508.1| - 0.93 9.6 8.8 1.4 9.0 8.8 1.2 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding GCIP PF13324.6 gi|336252401|ref|YP_004595508.1| - 1 8.9 7.7 1.5 8.4 7.7 1.1 1 0 0 1 1 1 0 Grap2 and cyclin-D-interacting YtxH PF12732.7 gi|336252401|ref|YP_004595508.1| - 1.2 9.7 6.7 66 4.1 6.7 2.6 1 1 0 1 1 1 0 YtxH-like protein CREPT PF16566.5 gi|336252401|ref|YP_004595508.1| - 1.3 9.2 6.1 2 8.6 6.1 1.3 1 0 0 1 1 1 0 Cell-cycle alteration and expression-elevated protein in tumour DUF4446 PF14584.6 gi|336252401|ref|YP_004595508.1| - 1.3 9.0 4.2 3.4 7.6 3.7 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF4446) TMCO5 PF14992.6 gi|336252401|ref|YP_004595508.1| - 1.6 8.3 10.9 2.2 7.8 10.9 1.1 1 0 0 1 1 1 0 TMCO5 family Cauli_AT PF03233.13 gi|336252401|ref|YP_004595508.1| - 1.7 8.5 6.1 3.6 7.5 6.1 1.5 1 1 0 1 1 1 0 Aphid transmission protein TMPIT PF07851.13 gi|336252401|ref|YP_004595508.1| - 1.8 7.8 4.1 2.4 7.3 4.1 1.2 1 0 0 1 1 1 0 TMPIT-like protein Laminin_II PF06009.12 gi|336252401|ref|YP_004595508.1| - 1.8 8.6 7.2 3.2 7.8 7.2 1.3 1 0 0 1 1 1 0 Laminin Domain II FlxA PF14282.6 gi|336252401|ref|YP_004595508.1| - 2 8.4 5.9 0.82 9.7 2.8 1.8 1 1 1 2 2 2 0 FlxA-like protein IFP_35_N PF07334.13 gi|336252401|ref|YP_004595508.1| - 2.3 8.4 10.0 8.6 6.5 0.9 2.3 2 0 0 2 2 2 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus Seryl_tRNA_N PF02403.22 gi|336252401|ref|YP_004595508.1| - 2.4 8.5 13.1 9 6.6 13.1 1.8 1 1 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain Cep57_MT_bd PF06657.13 gi|336252401|ref|YP_004595508.1| - 2.9 8.4 8.9 3.2 8.3 2.5 2.5 1 1 2 3 3 3 0 Centrosome microtubule-binding domain of Cep57 CCDC24 PF15669.5 gi|336252401|ref|YP_004595508.1| - 3.2 7.6 10.9 3.5 7.5 1.4 2.1 1 1 1 2 2 2 0 Coiled-coil domain-containing protein 24 family OmpH PF03938.14 gi|336252401|ref|YP_004595508.1| - 3.5 7.9 10.8 11 6.4 10.8 1.7 1 1 0 1 1 1 0 Outer membrane protein (OmpH-like) ZapB PF06005.12 gi|336252401|ref|YP_004595508.1| - 4.1 7.9 18.2 3.4 8.2 10.5 2.4 1 1 1 2 2 2 0 Cell division protein ZapB BLOC1_2 PF10046.9 gi|336252401|ref|YP_004595508.1| - 4.1 7.8 9.4 2.9 8.2 3.0 2.2 1 1 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Syntaxin_2 PF14523.6 gi|336252401|ref|YP_004595508.1| - 4.6 7.7 8.1 6.8 7.1 6.4 2.2 2 1 0 2 2 1 0 Syntaxin-like protein COG2 PF06148.11 gi|336252401|ref|YP_004595508.1| - 4.7 7.3 8.5 23 5.1 8.3 2.0 1 1 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 Swi5 PF07061.11 gi|336252401|ref|YP_004595508.1| - 5.6 7.1 9.3 2.2 8.4 3.6 2.6 3 0 0 3 3 2 0 Swi5 PDDEXK_1 PF12705.7 gi|336252402|ref|YP_004595509.1| - 3.1e-13 50.2 0.0 1.4e-12 48.1 0.0 1.9 1 1 1 2 2 2 1 PD-(D/E)XK nuclease superfamily Sel_put PF04328.13 gi|336252402|ref|YP_004595509.1| - 0.17 12.0 0.1 0.95 9.5 0.0 2.3 2 0 0 2 2 2 0 Selenoprotein, putative UvrD-helicase PF00580.21 gi|336252403|ref|YP_004595510.1| - 7.8e-52 176.7 0.1 2.3e-51 175.2 0.1 1.7 1 1 0 1 1 1 1 UvrD/REP helicase N-terminal domain UvrD_C PF13361.6 gi|336252403|ref|YP_004595510.1| - 5.6e-30 104.9 0.0 1.2e-18 67.6 0.0 2.2 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain AAA_19 PF13245.6 gi|336252403|ref|YP_004595510.1| - 1.1e-27 97.1 0.0 9.2e-27 94.2 0.0 2.3 1 1 0 1 1 1 1 AAA domain PDDEXK_1 PF12705.7 gi|336252403|ref|YP_004595510.1| - 3.8e-10 40.1 0.8 4.3e-09 36.7 0.5 2.3 1 1 1 2 2 2 1 PD-(D/E)XK nuclease superfamily UvrD_C_2 PF13538.6 gi|336252403|ref|YP_004595510.1| - 4.5e-09 36.0 0.1 0.00085 19.1 0.0 2.9 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain AAA_30 PF13604.6 gi|336252403|ref|YP_004595510.1| - 1.1e-05 25.2 0.0 7.7e-05 22.5 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_11 PF13086.6 gi|336252403|ref|YP_004595510.1| - 0.00052 19.9 0.0 0.3 10.9 0.0 2.2 2 0 0 2 2 2 2 AAA domain Viral_helicase1 PF01443.18 gi|336252403|ref|YP_004595510.1| - 0.0008 19.2 0.2 4.1 7.1 0.1 3.5 3 0 0 3 3 3 1 Viral (Superfamily 1) RNA helicase AAA_12 PF13087.6 gi|336252403|ref|YP_004595510.1| - 0.0039 16.8 0.1 0.24 11.0 0.0 3.0 2 1 0 2 2 2 1 AAA domain DUF2800 PF10926.8 gi|336252403|ref|YP_004595510.1| - 0.005 16.2 0.0 0.0092 15.3 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2800) PhoH PF02562.16 gi|336252403|ref|YP_004595510.1| - 0.0058 16.1 0.1 3.2 7.2 0.0 2.6 2 1 0 2 2 2 2 PhoH-like protein HopW1-1 PF15457.6 gi|336252404|ref|YP_004595511.1| - 0.00069 19.0 0.8 0.001 18.4 0.8 1.2 1 0 0 1 1 1 1 Type III T3SS secreted effector HopW1-1/HopPmaA TMF_TATA_bd PF12325.8 gi|336252404|ref|YP_004595511.1| - 0.00082 19.6 9.0 0.00082 19.6 9.0 2.6 2 1 1 3 3 3 1 TATA element modulatory factor 1 TATA binding GAS PF13851.6 gi|336252404|ref|YP_004595511.1| - 0.0011 18.4 4.7 0.0011 18.4 4.7 1.8 2 0 0 2 2 1 1 Growth-arrest specific micro-tubule binding NOG1_N PF17835.1 gi|336252404|ref|YP_004595511.1| - 0.003 17.5 3.1 1.2 9.0 0.0 2.9 2 1 0 2 2 2 2 NOG1 N-terminal helical domain SEN1_N PF12726.7 gi|336252404|ref|YP_004595511.1| - 0.0061 14.9 0.6 0.0079 14.5 0.6 1.1 1 0 0 1 1 1 1 SEN1 N terminal Golgin_A5 PF09787.9 gi|336252404|ref|YP_004595511.1| - 0.0076 15.7 13.1 0.011 15.2 13.1 1.3 1 0 0 1 1 1 1 Golgin subfamily A member 5 Tup_N PF08581.10 gi|336252404|ref|YP_004595511.1| - 0.013 15.8 5.7 0.013 15.8 5.7 2.6 1 1 1 2 2 2 0 Tup N-terminal DASH_Spc19 PF08287.11 gi|336252404|ref|YP_004595511.1| - 0.04 13.8 6.5 0.083 12.8 6.5 1.6 1 0 0 1 1 1 0 Spc19 Nup188_C PF18378.1 gi|336252404|ref|YP_004595511.1| - 0.053 12.4 4.3 0.077 11.8 4.3 1.2 1 0 0 1 1 1 0 Nuclear pore protein NUP188 C-terminal domain Spc7 PF08317.11 gi|336252404|ref|YP_004595511.1| - 0.061 12.2 14.2 0.096 11.5 14.2 1.4 1 0 0 1 1 1 0 Spc7 kinetochore protein FIN1 PF17300.2 gi|336252404|ref|YP_004595511.1| - 0.12 11.9 4.5 0.21 11.0 4.5 1.5 1 0 0 1 1 1 0 Filaments in between nuclei protein-1 Synaptobrevin PF00957.21 gi|336252404|ref|YP_004595511.1| - 0.14 12.0 6.9 0.081 12.7 3.6 2.2 1 1 1 2 2 2 0 Synaptobrevin Herpes_UL25 PF01499.16 gi|336252404|ref|YP_004595511.1| - 0.14 10.6 1.3 0.17 10.4 1.3 1.1 1 0 0 1 1 1 0 Herpesvirus UL25 family AcylCoA_dehyd_C PF12186.8 gi|336252404|ref|YP_004595511.1| - 0.3 11.2 4.7 0.88 9.7 0.4 3.0 2 1 0 3 3 3 0 Acyl-CoA dehydrogenase C terminal LMBR1 PF04791.16 gi|336252404|ref|YP_004595511.1| - 0.36 9.7 5.1 0.44 9.4 5.1 1.2 1 0 0 1 1 1 0 LMBR1-like membrane protein GrpE PF01025.19 gi|336252404|ref|YP_004595511.1| - 0.52 10.0 11.9 0.082 12.6 7.9 1.6 2 0 0 2 2 1 0 GrpE DUF4047 PF13256.6 gi|336252404|ref|YP_004595511.1| - 0.62 10.3 8.1 0.33 11.1 5.4 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4047) Uds1 PF15456.6 gi|336252404|ref|YP_004595511.1| - 0.63 10.2 11.5 0.3 11.2 3.6 2.9 2 1 1 3 3 3 0 Up-regulated During Septation Atg14 PF10186.9 gi|336252404|ref|YP_004595511.1| - 0.64 9.0 8.1 0.88 8.6 8.1 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 Syntaxin_2 PF14523.6 gi|336252404|ref|YP_004595511.1| - 0.71 10.3 5.1 1.4 9.3 3.8 2.2 1 1 0 1 1 1 0 Syntaxin-like protein TMPIT PF07851.13 gi|336252404|ref|YP_004595511.1| - 0.77 8.9 4.4 1.1 8.4 4.4 1.2 1 0 0 1 1 1 0 TMPIT-like protein COG2 PF06148.11 gi|336252404|ref|YP_004595511.1| - 0.89 9.6 11.9 0.27 11.3 7.0 2.6 2 1 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 TrmO_C PF18389.1 gi|336252404|ref|YP_004595511.1| - 1 9.5 6.2 12 6.1 0.2 3.2 3 0 0 3 3 3 0 TrmO C-terminal domain DUF1664 PF07889.12 gi|336252404|ref|YP_004595511.1| - 1.1 9.4 6.4 0.8 9.7 3.2 2.3 1 1 2 3 3 3 0 Protein of unknown function (DUF1664) Occludin_ELL PF07303.13 gi|336252404|ref|YP_004595511.1| - 1.1 10.1 6.7 2.1 9.1 3.3 2.9 1 1 2 3 3 3 0 Occludin homology domain Ead_Ea22 PF13935.6 gi|336252404|ref|YP_004595511.1| - 1.3 9.7 14.8 0.34 11.6 8.7 2.5 2 1 0 2 2 2 0 Ead/Ea22-like protein DUF932 PF06067.11 gi|336252404|ref|YP_004595511.1| - 1.8 8.2 8.2 3.5 7.3 5.1 2.6 2 1 1 3 3 3 0 Domain of unknown function (DUF932) APG6_N PF17675.1 gi|336252404|ref|YP_004595511.1| - 2.3 8.7 22.9 0.092 13.3 16.0 2.0 2 1 1 3 3 2 0 Apg6 coiled-coil region Iron_permease PF04120.12 gi|336252404|ref|YP_004595511.1| - 2.6 7.8 4.5 4 7.2 3.6 1.8 1 1 0 1 1 1 0 Low affinity iron permease Fib_alpha PF08702.10 gi|336252404|ref|YP_004595511.1| - 2.7 8.2 6.4 2.7 8.2 4.9 1.8 2 0 0 2 2 1 0 Fibrinogen alpha/beta chain family Nup54 PF13874.6 gi|336252404|ref|YP_004595511.1| - 3.1 7.9 10.8 1.4 9.0 7.0 2.2 2 1 1 3 3 3 0 Nucleoporin complex subunit 54 DUF4407 PF14362.6 gi|336252404|ref|YP_004595511.1| - 3.7 6.8 6.8 5.5 6.3 6.6 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) ZapA PF05164.13 gi|336252404|ref|YP_004595511.1| - 4.3 7.8 16.5 7.1 7.1 0.3 4.0 3 1 1 4 4 4 0 Cell division protein ZapA YtxH PF12732.7 gi|336252404|ref|YP_004595511.1| - 5 7.7 5.0 33 5.1 2.5 3.3 2 1 0 2 2 2 0 YtxH-like protein DUF3782 PF12644.7 gi|336252404|ref|YP_004595511.1| - 6.6 7.0 10.3 14 6.0 7.4 2.9 2 1 0 2 2 2 0 Protein of unknown function (DUF3782) DivIC PF04977.15 gi|336252404|ref|YP_004595511.1| - 8.4 6.3 10.6 44 3.9 10.6 2.3 1 1 0 1 1 1 0 Septum formation initiator FapA PF03961.13 gi|336252404|ref|YP_004595511.1| - 8.6 4.8 8.7 15 4.1 8.7 1.4 1 1 0 1 1 1 0 Flagellar Assembly Protein A zinc_ribbon_9 PF14369.6 gi|336252407|ref|YP_004595514.1| - 0.095 13.0 0.4 19 5.6 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon T2SS-T3SS_pil_N PF13629.6 gi|336252407|ref|YP_004595514.1| - 0.14 11.9 0.0 0.43 10.3 0.0 1.8 2 0 0 2 2 2 0 Pilus formation protein N terminal region zf-Di19 PF05605.12 gi|336252407|ref|YP_004595514.1| - 2 8.8 3.8 37 4.7 3.9 2.3 1 1 1 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding DUF4268 PF14088.6 gi|336252408|ref|YP_004595515.1| - 0.088 12.7 0.0 0.3 11.0 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4268) Phage_integrase PF00589.22 gi|336252409|ref|YP_004595516.1| - 5.5e-16 58.8 0.0 1.7e-15 57.2 0.0 1.7 2 0 0 2 2 2 1 Phage integrase family DZR PF12773.7 gi|336252409|ref|YP_004595516.1| - 0.00025 21.0 8.4 0.00055 19.9 8.4 1.6 1 1 0 1 1 1 1 Double zinc ribbon UPF0236 PF06782.11 gi|336252409|ref|YP_004595516.1| - 0.0042 15.8 0.0 0.0089 14.7 0.0 1.4 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0236) PqqD PF05402.12 gi|336252409|ref|YP_004595516.1| - 0.056 13.8 0.0 0.16 12.3 0.0 1.8 1 0 0 1 1 1 0 Coenzyme PQQ synthesis protein D (PqqD) USP8_interact PF08941.10 gi|336252409|ref|YP_004595516.1| - 0.094 12.5 0.2 0.2 11.4 0.1 1.6 1 1 0 1 1 1 0 USP8 interacting DUF2614 PF11023.8 gi|336252409|ref|YP_004595516.1| - 0.49 10.5 1.3 0.81 9.8 1.3 1.2 1 0 0 1 1 1 0 Zinc-ribbon containing domain C1_1 PF00130.22 gi|336252409|ref|YP_004595516.1| - 1.2 9.0 9.6 0.65 9.9 7.2 1.8 2 0 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-ribbon_3 PF13248.6 gi|336252409|ref|YP_004595516.1| - 2.5 7.6 5.8 20 4.7 2.8 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zf-C3HC4_3 PF13920.6 gi|336252409|ref|YP_004595516.1| - 9.2 6.2 10.7 6.1 6.8 5.6 2.2 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) AAA_22 PF13401.6 gi|336252410|ref|YP_004595517.1| - 1.5e-05 25.2 0.0 8.1e-05 22.9 0.0 2.0 2 0 0 2 2 2 1 AAA domain KAP_NTPase PF07693.14 gi|336252410|ref|YP_004595517.1| - 0.0012 18.1 0.1 0.07 12.4 0.2 2.6 1 1 2 3 3 3 1 KAP family P-loop domain AAA_16 PF13191.6 gi|336252410|ref|YP_004595517.1| - 0.011 16.1 1.7 0.011 16.1 1.7 2.0 2 1 0 2 2 2 0 AAA ATPase domain PTPlike_phytase PF14566.6 gi|336252410|ref|YP_004595517.1| - 0.1 12.7 0.2 2.9 8.0 0.0 2.3 1 1 1 2 2 2 0 Inositol hexakisphosphate ThiS PF02597.20 gi|336252411|ref|YP_004595518.1| - 0.0018 18.9 0.3 0.012 16.3 0.1 2.0 2 0 0 2 2 2 1 ThiS family DUF3600 PF12207.8 gi|336252411|ref|YP_004595518.1| - 0.0095 15.9 0.3 0.011 15.7 0.3 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF3600) DUF3235 PF11574.8 gi|336252411|ref|YP_004595518.1| - 0.036 14.9 0.2 0.052 14.4 0.2 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3235) PPP1R35_C PF15503.6 gi|336252411|ref|YP_004595518.1| - 0.066 13.0 0.1 0.084 12.7 0.1 1.1 1 0 0 1 1 1 0 Protein phosphatase 1 regulatory subunit 35 C-terminus Metallophos_2 PF12850.7 gi|336252412|ref|YP_004595519.1| - 7.9e-12 45.7 0.1 1.3e-11 45.0 0.1 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|336252412|ref|YP_004595519.1| - 9.5e-07 29.5 3.6 1.4e-05 25.7 3.6 2.1 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 gi|336252412|ref|YP_004595519.1| - 0.084 12.2 0.0 0.12 11.7 0.0 1.2 1 0 0 1 1 1 0 Metallophosphoesterase, calcineurin superfamily DUF3458_C PF17432.2 gi|336252414|ref|YP_004595521.1| - 0.043 13.2 0.1 0.045 13.1 0.1 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF3458_C) ARM repeats ATP-synt_F PF01990.17 gi|336252416|ref|YP_004595523.1| - 0.016 15.5 0.0 0.02 15.2 0.0 1.2 1 0 0 1 1 1 0 ATP synthase (F/14-kDa) subunit PUA PF01472.20 gi|336252416|ref|YP_004595523.1| - 0.021 14.8 0.1 0.032 14.2 0.1 1.2 1 0 0 1 1 1 0 PUA domain TGS PF02824.21 gi|336252416|ref|YP_004595523.1| - 0.041 13.9 0.0 0.072 13.2 0.0 1.4 1 0 0 1 1 1 0 TGS domain DUF4180 PF13788.6 gi|336252416|ref|YP_004595523.1| - 0.12 12.3 0.1 0.16 11.9 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4180) SecY PF00344.20 gi|336252417|ref|YP_004595524.1| - 3.7e-69 233.3 20.3 4.4e-69 233.1 20.3 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.9 gi|336252417|ref|YP_004595524.1| - 4.4e-12 45.6 2.1 1.7e-11 43.7 2.1 2.2 1 0 0 1 1 1 1 Plug domain of Sec61p Ribosomal_L27A PF00828.19 gi|336252418|ref|YP_004595525.1| - 9.5e-17 61.9 0.3 9.5e-17 61.9 0.3 1.5 2 0 0 2 2 2 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Ribosomal_L30 PF00327.20 gi|336252419|ref|YP_004595526.1| - 1.2e-10 41.1 0.0 2.1e-10 40.3 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e Ribosomal_S5 PF00333.20 gi|336252420|ref|YP_004595527.1| - 1.6e-23 82.4 0.5 4.6e-23 81.0 0.1 1.9 2 0 0 2 2 2 1 Ribosomal protein S5, N-terminal domain Ribosomal_S5_C PF03719.15 gi|336252420|ref|YP_004595527.1| - 3.5e-22 77.6 0.2 6.3e-22 76.8 0.0 1.5 2 0 0 2 2 2 1 Ribosomal protein S5, C-terminal domain Ribosomal_L5e PF17144.4 gi|336252421|ref|YP_004595528.1| - 4.3e-31 108.1 0.0 1.4e-19 70.7 0.0 2.2 1 1 1 2 2 2 2 Ribosomal large subunit proteins 60S L5, and 50S L18 Ribosomal_L18p PF00861.22 gi|336252421|ref|YP_004595528.1| - 1.4e-09 38.3 0.0 2.2e-09 37.7 0.0 1.2 1 0 0 1 1 1 1 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Ribosomal_L19e PF01280.20 gi|336252422|ref|YP_004595529.1| - 2.9e-57 192.8 6.3 3.2e-57 192.6 6.3 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e SHOCT PF09851.9 gi|336252422|ref|YP_004595529.1| - 0.0013 18.4 1.1 0.0013 18.4 1.1 2.1 2 0 0 2 2 2 1 Short C-terminal domain AbiEi_4 PF13338.6 gi|336252422|ref|YP_004595529.1| - 0.03 14.5 0.9 2.4 8.4 0.3 2.4 2 0 0 2 2 2 0 Transcriptional regulator, AbiEi antitoxin Lant_dehydr_C PF14028.6 gi|336252422|ref|YP_004595529.1| - 0.042 13.4 0.4 0.047 13.2 0.4 1.1 1 0 0 1 1 1 0 Lantibiotic biosynthesis dehydratase C-term CDC45 PF02724.14 gi|336252422|ref|YP_004595529.1| - 2.9 6.1 5.5 3.1 6.0 5.5 1.0 1 0 0 1 1 1 0 CDC45-like protein Ribosomal_L32e PF01655.18 gi|336252423|ref|YP_004595530.1| - 4e-32 110.8 0.2 8.2e-32 109.9 0.2 1.5 1 0 0 1 1 1 1 Ribosomal protein L32 HHH_5 PF14520.6 gi|336252423|ref|YP_004595530.1| - 4.5e-13 49.6 4.4 5.5e-13 49.3 0.9 2.8 2 1 0 2 2 2 1 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.9 gi|336252423|ref|YP_004595530.1| - 1.1e-06 28.3 0.0 7e-06 25.8 0.0 2.2 2 0 0 2 2 2 1 Fingers domain of DNA polymerase lambda HHH PF00633.23 gi|336252423|ref|YP_004595530.1| - 1.4e-06 27.8 1.8 0.061 13.2 0.0 3.2 3 0 0 3 3 3 2 Helix-hairpin-helix motif HHH_2 PF12826.7 gi|336252423|ref|YP_004595530.1| - 1.2e-05 25.2 0.6 2.9e-05 24.1 0.6 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif Cdd1 PF11731.8 gi|336252423|ref|YP_004595530.1| - 0.00034 20.8 0.0 0.0019 18.4 0.0 2.2 2 0 0 2 2 2 1 Pathogenicity locus HHH_8 PF14716.6 gi|336252423|ref|YP_004595530.1| - 0.044 14.1 2.2 1 9.7 0.2 2.9 2 1 1 3 3 3 0 Helix-hairpin-helix domain HHH_3 PF12836.7 gi|336252423|ref|YP_004595530.1| - 0.054 13.8 0.1 5.7 7.3 0.1 2.7 1 1 1 2 2 2 0 Helix-hairpin-helix motif LytR_C PF13399.6 gi|336252423|ref|YP_004595530.1| - 0.13 13.3 2.3 0.96 10.5 0.4 2.8 2 1 1 3 3 3 0 LytR cell envelope-related transcriptional attenuator Ribosomal_L6 PF00347.23 gi|336252424|ref|YP_004595531.1| - 1.5e-29 102.4 1.0 2.8e-14 53.5 0.1 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 HSP20 PF00011.21 gi|336252424|ref|YP_004595531.1| - 0.51 10.5 4.2 2 8.6 0.2 3.1 3 1 1 4 4 4 0 Hsp20/alpha crystallin family Ribosomal_S8 PF00410.19 gi|336252425|ref|YP_004595532.1| - 7.3e-24 84.1 0.0 9.4e-24 83.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_S14 PF00253.21 gi|336252426|ref|YP_004595533.1| - 1.7e-11 43.7 2.2 2e-11 43.5 2.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e DUF4428 PF14471.6 gi|336252426|ref|YP_004595533.1| - 0.0067 16.3 0.4 0.0085 16.0 0.4 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4428) Ribosomal_L5_C PF00673.21 gi|336252427|ref|YP_004595534.1| - 3.4e-21 75.2 0.0 1.1e-20 73.6 0.0 1.9 1 1 1 2 2 2 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.19 gi|336252427|ref|YP_004595534.1| - 1.7e-16 60.2 0.1 2.7e-16 59.6 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein L5 Hva1_TUDOR PF11160.8 gi|336252427|ref|YP_004595534.1| - 0.094 12.9 0.5 0.21 11.8 0.5 1.6 1 0 0 1 1 1 0 Hypervirulence associated proteins TUDOR domain Ribosomal_S4e PF00900.20 gi|336252428|ref|YP_004595535.1| - 1.8e-22 79.0 0.0 3.6e-22 78.0 0.0 1.5 1 0 0 1 1 1 1 Ribosomal family S4e RS4NT PF08071.12 gi|336252428|ref|YP_004595535.1| - 5.5e-11 42.4 0.2 7.9e-11 41.9 0.2 1.3 1 0 0 1 1 1 1 RS4NT (NUC023) domain S4 PF01479.25 gi|336252428|ref|YP_004595535.1| - 2.6e-05 23.9 0.0 4.5e-05 23.1 0.0 1.4 1 0 0 1 1 1 1 S4 domain S4_2 PF13275.6 gi|336252428|ref|YP_004595535.1| - 0.027 14.3 0.0 0.079 12.8 0.0 1.8 2 0 0 2 2 2 0 S4 domain KOW PF00467.29 gi|336252428|ref|YP_004595535.1| - 0.055 13.4 0.5 0.16 11.9 0.5 1.9 1 0 0 1 1 1 0 KOW motif Ribosomal_L26 PF16906.5 gi|336252429|ref|YP_004595536.1| - 2.5e-23 82.3 0.0 3.2e-23 82.0 0.0 1.1 1 0 0 1 1 1 1 Ribosomal proteins L26 eukaryotic, L24P archaeal KOW PF00467.29 gi|336252429|ref|YP_004595536.1| - 2.8e-06 27.1 1.9 5.8e-06 26.1 1.9 1.6 1 0 0 1 1 1 1 KOW motif Ribosomal_L14 PF00238.19 gi|336252430|ref|YP_004595537.1| - 5.3e-37 126.6 0.4 6.4e-37 126.4 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e Ribosomal_S17 PF00366.20 gi|336252431|ref|YP_004595538.1| - 2.2e-25 88.6 1.9 2.8e-25 88.2 1.9 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 Ribosomal_S17_N PF16205.5 gi|336252431|ref|YP_004595538.1| - 0.00011 22.5 0.0 0.00019 21.7 0.0 1.4 1 0 0 1 1 1 1 Ribosomal_S17 N-terminal UPF0086 PF01868.16 gi|336252432|ref|YP_004595539.1| - 8.8e-28 96.1 0.0 1e-27 95.9 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function UPF0086 Ribosomal_L29 PF00831.23 gi|336252433|ref|YP_004595540.1| - 4.8e-19 68.1 0.3 6.1e-19 67.7 0.3 1.1 1 0 0 1 1 1 1 Ribosomal L29 protein Med9 PF07544.13 gi|336252433|ref|YP_004595540.1| - 0.028 14.5 0.2 0.32 11.1 0.1 2.0 2 0 0 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 FUSC-like PF12805.7 gi|336252433|ref|YP_004595540.1| - 0.069 12.2 0.0 0.079 12.0 0.0 1.0 1 0 0 1 1 1 0 FUSC-like inner membrane protein yccS Ribosomal_S3_C PF00189.20 gi|336252434|ref|YP_004595541.1| - 3.5e-22 78.7 0.7 1.4e-21 76.8 0.6 2.1 3 0 0 3 3 3 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.17 gi|336252434|ref|YP_004595541.1| - 6e-17 61.2 0.1 1.4e-16 60.0 0.1 1.7 1 0 0 1 1 1 1 KH domain KH_1 PF00013.29 gi|336252434|ref|YP_004595541.1| - 0.034 14.0 1.3 0.092 12.6 0.2 2.4 3 0 0 3 3 3 0 KH domain KH_5 PF13184.6 gi|336252434|ref|YP_004595541.1| - 0.054 13.6 0.0 0.66 10.1 0.0 2.6 2 0 0 2 2 2 0 NusA-like KH domain Ribosomal_L22 PF00237.19 gi|336252435|ref|YP_004595542.1| - 5e-20 71.7 0.0 6e-20 71.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Ribosomal_S19 PF00203.21 gi|336252436|ref|YP_004595543.1| - 4.4e-32 109.8 0.0 6e-32 109.4 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S19 Siah-Interact_N PF09032.11 gi|336252436|ref|YP_004595543.1| - 0.012 15.9 1.6 0.017 15.4 1.6 1.3 1 0 0 1 1 1 0 Siah interacting protein, N terminal Citrate_synt PF00285.21 gi|336252436|ref|YP_004595543.1| - 0.083 11.9 0.1 0.091 11.8 0.1 1.1 1 0 0 1 1 1 0 Citrate synthase, C-terminal domain Ribosomal_L2_C PF03947.18 gi|336252437|ref|YP_004595544.1| - 1.9e-45 154.1 2.7 3e-45 153.5 2.7 1.3 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.23 gi|336252437|ref|YP_004595544.1| - 1.2e-18 66.9 0.0 4.9e-18 64.8 0.0 2.1 2 0 0 2 2 2 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_L23 PF00276.20 gi|336252438|ref|YP_004595545.1| - 1.4e-16 60.6 2.0 4.8e-16 58.9 2.0 1.7 1 1 0 1 1 1 1 Ribosomal protein L23 CE2_N PF17996.1 gi|336252438|ref|YP_004595545.1| - 0.063 13.3 0.1 0.075 13.0 0.1 1.2 1 0 0 1 1 1 0 Carbohydrate esterase 2 N-terminal SSrecog PF03531.14 gi|336252438|ref|YP_004595545.1| - 0.12 12.3 0.9 0.21 11.5 0.9 1.5 1 1 0 1 1 1 0 Structure-specific recognition protein (SSRP1) Ribosomal_L4 PF00573.22 gi|336252439|ref|YP_004595546.1| - 5.4e-46 156.7 0.1 6.2e-46 156.5 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L3 PF00297.22 gi|336252440|ref|YP_004595547.1| - 3.1e-108 362.1 0.1 1.4e-107 359.9 0.1 1.8 1 1 0 1 1 1 1 Ribosomal protein L3 Methyltrn_RNA_3 PF02598.17 gi|336252441|ref|YP_004595548.1| - 6.8e-71 239.1 0.0 7.7e-71 238.9 0.0 1.0 1 0 0 1 1 1 1 Putative RNA methyltransferase DUF4112 PF13430.6 gi|336252442|ref|YP_004595549.1| - 5.5e-30 103.7 0.4 6.4e-30 103.5 0.4 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4112) Phage_holin_2_4 PF16082.5 gi|336252442|ref|YP_004595549.1| - 0.021 14.5 0.4 0.03 14.1 0.4 1.3 1 0 0 1 1 1 0 Bacteriophage holin family, superfamily II-like HalOD1 PF18545.1 gi|336252443|ref|YP_004595550.1| - 9.1e-23 80.3 0.4 1.2e-22 79.9 0.4 1.2 1 0 0 1 1 1 1 Halobacterial output domain 1 Thiamine_BP PF01910.17 gi|336252444|ref|YP_004595551.1| - 4.5e-24 84.2 0.6 5.2e-24 84.0 0.6 1.0 1 0 0 1 1 1 1 Thiamine-binding protein HalOD1 PF18545.1 gi|336252444|ref|YP_004595551.1| - 0.017 15.4 1.6 0.028 14.7 0.8 1.8 1 1 1 2 2 2 0 Halobacterial output domain 1 HMA PF00403.26 gi|336252445|ref|YP_004595552.1| - 3.4e-13 49.8 0.4 3.7e-13 49.7 0.4 1.0 1 0 0 1 1 1 1 Heavy-metal-associated domain MCH PF02289.16 gi|336252446|ref|YP_004595553.1| - 9.6e-116 386.4 0.0 1.1e-115 386.3 0.0 1.0 1 0 0 1 1 1 1 Cyclohydrolase (MCH) HAD_2 PF13419.6 gi|336252447|ref|YP_004595554.1| - 5.9e-21 75.3 0.0 1.3e-20 74.2 0.0 1.6 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|336252447|ref|YP_004595554.1| - 3.2e-15 57.0 0.3 1.7e-13 51.3 0.1 2.1 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|336252447|ref|YP_004595554.1| - 1.9e-10 40.7 0.0 4.2e-10 39.6 0.0 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|336252447|ref|YP_004595554.1| - 0.00014 22.3 0.3 0.00029 21.3 0.3 1.6 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase GTP_EFTU PF00009.27 gi|336252448|ref|YP_004595555.1| - 2.3e-35 121.9 0.0 3.4e-35 121.4 0.0 1.1 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D2 PF03144.25 gi|336252448|ref|YP_004595555.1| - 1.2e-11 44.9 0.4 3.6e-11 43.3 0.4 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 2 GTP_EFTU_D3 PF03143.17 gi|336252448|ref|YP_004595555.1| - 6.4e-07 29.7 0.0 5.4e-06 26.7 0.0 2.4 1 1 0 1 1 1 1 Elongation factor Tu C-terminal domain RsgA_GTPase PF03193.16 gi|336252448|ref|YP_004595555.1| - 0.012 15.6 0.1 0.38 10.6 0.0 2.3 2 0 0 2 2 2 0 RsgA GTPase MMR_HSR1 PF01926.23 gi|336252448|ref|YP_004595555.1| - 0.029 14.5 0.0 0.11 12.5 0.0 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase Polysacc_deac_1 PF01522.21 gi|336252448|ref|YP_004595555.1| - 0.052 13.4 0.0 0.087 12.7 0.0 1.3 1 0 0 1 1 1 0 Polysaccharide deacetylase ATP_bind_1 PF03029.17 gi|336252448|ref|YP_004595555.1| - 0.055 13.2 0.3 0.5 10.1 0.0 2.0 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein DUF2120 PF09893.9 gi|336252448|ref|YP_004595555.1| - 0.14 12.3 0.2 0.26 11.4 0.2 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2120) zf-HIT PF04438.16 gi|336252449|ref|YP_004595556.1| - 0.016 15.0 1.7 0.016 15.0 1.7 1.9 2 0 0 2 2 2 0 HIT zinc finger zf-B_box PF00643.24 gi|336252449|ref|YP_004595556.1| - 0.023 14.9 12.0 0.026 14.7 5.9 2.1 1 1 1 2 2 2 0 B-box zinc finger DZR PF12773.7 gi|336252449|ref|YP_004595556.1| - 0.49 10.5 12.5 2.9 8.0 1.2 2.1 1 1 1 2 2 2 0 Double zinc ribbon Prok-RING_2 PF14445.6 gi|336252449|ref|YP_004595556.1| - 0.65 10.2 7.1 0.92 9.7 7.1 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 2 DNA_RNApol_7kD PF03604.13 gi|336252449|ref|YP_004595556.1| - 0.88 9.3 7.6 2.1 8.1 0.1 2.6 2 1 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit PolC_DP2 PF03833.13 gi|336252449|ref|YP_004595556.1| - 0.89 7.3 4.1 0.89 7.3 4.1 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 OMPdecase PF00215.24 gi|336252450|ref|YP_004595557.1| - 7.2e-33 114.1 0.0 8.1e-33 113.9 0.0 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family DUF2859 PF11072.8 gi|336252450|ref|YP_004595557.1| - 0.14 11.9 0.0 0.31 10.8 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2859) zf-ribbon_3 PF13248.6 gi|336252451|ref|YP_004595558.1| - 0.0002 20.6 0.9 0.00035 19.9 0.9 1.4 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|336252451|ref|YP_004595558.1| - 0.00084 19.3 2.1 0.0015 18.5 2.1 1.4 1 0 0 1 1 1 1 Double zinc ribbon zinc-ribbons_6 PF07191.12 gi|336252451|ref|YP_004595558.1| - 0.001 19.0 1.6 0.0015 18.5 1.6 1.2 1 0 0 1 1 1 1 zinc-ribbons NOB1_Zn_bind PF08772.11 gi|336252451|ref|YP_004595558.1| - 0.0025 17.9 2.5 0.0041 17.3 2.5 1.3 1 0 0 1 1 1 1 Nin one binding (NOB1) Zn-ribbon like zf-C3HC4_3 PF13920.6 gi|336252451|ref|YP_004595558.1| - 0.012 15.5 0.3 0.022 14.6 0.3 1.4 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) RecR PF02132.15 gi|336252451|ref|YP_004595558.1| - 0.034 13.7 0.7 0.075 12.6 0.7 1.5 1 0 0 1 1 1 0 RecR protein HypA PF01155.19 gi|336252451|ref|YP_004595558.1| - 0.039 14.0 0.6 0.049 13.6 0.6 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Auto_anti-p27 PF06677.12 gi|336252451|ref|YP_004595558.1| - 0.05 13.8 1.4 0.074 13.2 1.4 1.2 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Zn-ribbon_8 PF09723.10 gi|336252451|ref|YP_004595558.1| - 0.17 12.1 4.2 0.55 10.4 4.2 1.8 1 1 0 1 1 1 0 Zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|336252451|ref|YP_004595558.1| - 0.24 11.4 1.9 3.9 7.5 0.1 2.2 2 0 0 2 2 2 0 Putative transposase DNA-binding domain zf-NADH-PPase PF09297.11 gi|336252451|ref|YP_004595558.1| - 0.3 10.8 3.4 4.3 7.1 0.2 2.4 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Nudix_N_2 PF14803.6 gi|336252451|ref|YP_004595558.1| - 0.93 9.5 4.4 16 5.5 0.2 2.4 2 0 0 2 2 2 0 Nudix N-terminal RNA_POL_M_15KD PF02150.16 gi|336252451|ref|YP_004595558.1| - 0.97 9.4 6.4 10 6.1 0.0 2.8 2 1 0 2 2 2 0 RNA polymerases M/15 Kd subunit UPF0547 PF10571.9 gi|336252451|ref|YP_004595558.1| - 1.3 9.2 5.3 15 5.8 0.2 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zinc_ribbon_2 PF13240.6 gi|336252451|ref|YP_004595558.1| - 1.6 8.5 5.1 7.6 6.4 4.6 2.1 1 1 2 3 3 3 0 zinc-ribbon domain HypA PF01155.19 gi|336252452|ref|YP_004595559.1| - 0.0026 17.8 0.9 0.0029 17.6 0.9 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TFIIS_C PF01096.18 gi|336252452|ref|YP_004595559.1| - 0.0043 16.9 1.4 0.92 9.4 0.3 2.4 2 1 0 2 2 2 2 Transcription factor S-II (TFIIS) zinc_ribbon_15 PF17032.5 gi|336252452|ref|YP_004595559.1| - 0.016 16.0 1.6 0.024 15.4 1.6 1.3 1 0 0 1 1 1 0 zinc-ribbon family Rubredoxin_2 PF18073.1 gi|336252452|ref|YP_004595559.1| - 0.059 13.1 5.3 0.1 12.3 5.3 1.5 1 1 0 1 1 1 0 Rubredoxin metal binding domain Desulfoferrod_N PF06397.12 gi|336252452|ref|YP_004595559.1| - 0.096 12.3 0.9 2.7 7.7 0.2 2.2 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain zf-ribbon_3 PF13248.6 gi|336252452|ref|YP_004595559.1| - 0.11 12.0 5.1 2.6 7.6 0.7 2.4 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.9 gi|336252452|ref|YP_004595559.1| - 0.12 12.5 0.6 0.12 12.5 0.6 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Zn-ribbon_8 PF09723.10 gi|336252452|ref|YP_004595559.1| - 0.54 10.4 10.7 0.76 9.9 9.3 2.0 1 1 0 1 1 1 0 Zinc ribbon domain zf-C2H2_4 PF13894.6 gi|336252452|ref|YP_004595559.1| - 0.91 10.5 5.9 2.4 9.2 0.9 2.2 1 1 1 2 2 2 0 C2H2-type zinc finger zf-RRN7 PF11781.8 gi|336252452|ref|YP_004595559.1| - 8.9 6.1 11.7 0.78 9.5 0.7 2.4 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 TrkA_C PF02080.21 gi|336252453|ref|YP_004595560.1| - 4.2e-14 52.1 0.9 9.7e-14 51.0 0.9 1.6 1 0 0 1 1 1 1 TrkA-C domain HTH_AsnC-type PF13404.6 gi|336252453|ref|YP_004595560.1| - 4e-10 39.4 1.4 7.3e-10 38.5 0.2 2.0 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|336252453|ref|YP_004595560.1| - 4.4e-10 38.9 0.1 4.2e-09 35.8 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|336252453|ref|YP_004595560.1| - 2.8e-05 24.1 0.0 6.4e-05 22.9 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|336252453|ref|YP_004595560.1| - 3e-05 23.9 0.0 7.3e-05 22.6 0.0 1.6 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.7 gi|336252453|ref|YP_004595560.1| - 0.00028 20.7 0.1 0.00098 19.0 0.1 1.9 1 1 1 2 2 2 1 MarR family HTH_DeoR PF08220.12 gi|336252453|ref|YP_004595560.1| - 0.00048 19.8 0.0 0.0011 18.7 0.0 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_5 PF01022.20 gi|336252453|ref|YP_004595560.1| - 0.0019 18.0 0.0 0.0033 17.2 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_28 PF13518.6 gi|336252453|ref|YP_004595560.1| - 0.0055 16.8 0.1 0.011 15.8 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|336252453|ref|YP_004595560.1| - 0.0072 16.2 0.0 0.017 15.0 0.0 1.6 1 0 0 1 1 1 1 MarR family PTase_Orf2 PF11468.8 gi|336252453|ref|YP_004595560.1| - 0.02 14.3 0.0 0.026 13.9 0.0 1.1 1 0 0 1 1 1 0 Aromatic prenyltransferase Orf2 Fe_dep_repress PF01325.19 gi|336252453|ref|YP_004595560.1| - 0.022 14.9 0.0 0.042 14.1 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.20 gi|336252453|ref|YP_004595560.1| - 0.026 14.9 0.0 0.055 13.8 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator HTH_CodY PF08222.11 gi|336252453|ref|YP_004595560.1| - 0.062 12.9 0.1 0.13 11.8 0.1 1.4 1 0 0 1 1 1 0 CodY helix-turn-helix domain HTH_23 PF13384.6 gi|336252453|ref|YP_004595560.1| - 0.099 12.5 0.0 0.19 11.6 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain HTH_30 PF13556.6 gi|336252453|ref|YP_004595560.1| - 0.19 11.5 1.2 0.25 11.2 0.1 1.7 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain TrkH PF02386.16 gi|336252454|ref|YP_004595561.1| - 2.7e-60 204.3 14.6 2.4e-32 112.1 1.6 2.0 2 0 0 2 2 2 2 Cation transport protein Form-deh_trans PF09163.11 gi|336252454|ref|YP_004595561.1| - 0.03 14.1 0.0 0.03 14.1 0.0 3.5 3 0 0 3 3 3 0 Formate dehydrogenase N, transmembrane DUF575 PF04746.12 gi|336252454|ref|YP_004595561.1| - 0.11 12.8 0.2 0.32 11.3 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF575) TrkA_N PF02254.18 gi|336252455|ref|YP_004595562.1| - 1.6e-49 167.0 8.0 2.7e-24 85.6 1.2 2.7 2 0 0 2 2 2 2 TrkA-N domain TrkA_C PF02080.21 gi|336252455|ref|YP_004595562.1| - 3e-27 94.3 13.1 1e-14 54.1 0.1 3.6 4 0 0 4 4 3 2 TrkA-C domain Shikimate_DH PF01488.20 gi|336252455|ref|YP_004595562.1| - 2.5e-12 47.0 0.1 1.7e-05 24.9 0.1 2.6 2 0 0 2 2 2 2 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.6 gi|336252455|ref|YP_004595562.1| - 6.6e-11 42.6 6.4 5.8e-06 26.7 1.1 2.9 2 1 1 3 3 3 2 Putative NAD(P)-binding Sacchrp_dh_NADP PF03435.18 gi|336252455|ref|YP_004595562.1| - 1.7e-07 31.6 3.6 0.00042 20.6 0.9 2.6 2 0 0 2 2 2 2 Saccharopine dehydrogenase NADP binding domain F420_oxidored PF03807.17 gi|336252455|ref|YP_004595562.1| - 2.8e-07 31.0 1.2 0.013 16.1 0.0 3.6 3 1 1 4 4 4 2 NADP oxidoreductase coenzyme F420-dependent Pyr_redox_2 PF07992.14 gi|336252455|ref|YP_004595562.1| - 2.9e-07 30.0 0.4 9.3e-07 28.4 0.4 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|336252455|ref|YP_004595562.1| - 7.8e-06 25.3 3.6 0.012 15.0 0.0 2.4 2 0 0 2 2 2 2 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_3 PF01494.19 gi|336252455|ref|YP_004595562.1| - 2.1e-05 24.0 0.0 0.049 12.9 0.0 2.5 2 0 0 2 2 2 2 FAD binding domain 3HCDH_N PF02737.18 gi|336252455|ref|YP_004595562.1| - 5.5e-05 23.1 0.1 0.14 12.0 0.1 2.5 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.16 gi|336252455|ref|YP_004595562.1| - 9.5e-05 22.1 0.1 0.0017 18.0 0.0 2.6 2 1 0 2 2 2 1 Ketopantoate reductase PanE/ApbA Castor_Poll_mid PF06241.12 gi|336252455|ref|YP_004595562.1| - 0.00018 21.4 0.0 0.027 14.4 0.0 2.5 2 0 0 2 2 2 1 Castor and Pollux, part of voltage-gated ion channel NAD_binding_2 PF03446.15 gi|336252455|ref|YP_004595562.1| - 0.00082 19.6 0.0 1 9.5 0.0 2.9 2 0 0 2 2 2 2 NAD binding domain of 6-phosphogluconate dehydrogenase Pyr_redox_3 PF13738.6 gi|336252455|ref|YP_004595562.1| - 0.00088 18.6 1.2 0.83 8.8 0.0 3.1 2 1 1 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|336252455|ref|YP_004595562.1| - 0.0011 19.5 4.3 0.15 12.6 0.0 3.7 4 0 0 4 4 3 1 Pyridine nucleotide-disulphide oxidoreductase adh_short PF00106.25 gi|336252455|ref|YP_004595562.1| - 0.0017 17.8 0.5 0.047 13.1 0.0 2.4 2 0 0 2 2 2 1 short chain dehydrogenase UDPG_MGDP_dh_N PF03721.14 gi|336252455|ref|YP_004595562.1| - 0.0021 17.6 2.0 0.17 11.4 0.3 2.8 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain GFO_IDH_MocA PF01408.22 gi|336252455|ref|YP_004595562.1| - 0.0029 18.4 0.4 1.2 10.0 0.1 2.7 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold ADH_zinc_N PF00107.26 gi|336252455|ref|YP_004595562.1| - 0.0051 16.8 2.4 0.029 14.3 0.1 3.1 4 1 0 4 4 3 1 Zinc-binding dehydrogenase Semialdhyde_dh PF01118.24 gi|336252455|ref|YP_004595562.1| - 0.0068 16.8 0.5 2.3 8.7 0.1 2.8 2 1 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain IlvN PF07991.12 gi|336252455|ref|YP_004595562.1| - 0.0092 15.6 1.1 0.041 13.5 0.1 2.3 2 1 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain 2-Hacid_dh_C PF02826.19 gi|336252455|ref|YP_004595562.1| - 0.017 14.5 0.0 2.8 7.3 0.0 2.5 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|336252455|ref|YP_004595562.1| - 0.058 13.4 0.0 0.64 10.0 0.0 2.3 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Toprim PF01751.22 gi|336252455|ref|YP_004595562.1| - 0.12 12.7 0.9 1.6 9.0 0.1 2.6 2 0 0 2 2 2 0 Toprim domain LTD PF00932.19 gi|336252455|ref|YP_004595562.1| - 0.18 12.1 0.3 97 3.4 0.0 3.3 3 0 0 3 3 3 0 Lamin Tail Domain DAO PF01266.24 gi|336252455|ref|YP_004595562.1| - 0.24 11.0 5.4 0.19 11.3 0.7 2.7 2 1 1 3 3 3 0 FAD dependent oxidoreductase ThiF PF00899.21 gi|336252455|ref|YP_004595562.1| - 0.74 9.1 7.8 2.6 7.4 0.5 3.6 2 2 2 4 4 4 0 ThiF family adh_short_C2 PF13561.6 gi|336252455|ref|YP_004595562.1| - 1 8.8 5.5 0.18 11.3 0.1 2.4 3 0 0 3 3 3 0 Enoyl-(Acyl carrier protein) reductase Rossmann-like PF10727.9 gi|336252455|ref|YP_004595562.1| - 5.2 6.9 9.7 1.7 8.5 1.3 3.7 3 2 0 3 3 3 0 Rossmann-like domain TrkH PF02386.16 gi|336252456|ref|YP_004595563.1| - 6.7e-68 229.4 7.9 2.6e-66 224.1 7.9 2.0 1 1 0 1 1 1 1 Cation transport protein Glyoxalase PF00903.25 gi|336252457|ref|YP_004595564.1| - 5e-13 49.4 0.1 6.2e-13 49.1 0.1 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|336252457|ref|YP_004595564.1| - 2.7e-10 40.5 0.1 3.3e-10 40.2 0.1 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.7 gi|336252457|ref|YP_004595564.1| - 6.2e-07 29.4 0.0 2.2e-05 24.4 0.0 2.1 1 1 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_3 PF13468.6 gi|336252457|ref|YP_004595564.1| - 0.00053 20.1 0.2 0.0012 19.0 0.2 1.6 1 1 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_6 PF18029.1 gi|336252457|ref|YP_004595564.1| - 0.0021 18.8 0.5 0.0046 17.7 0.5 1.6 1 1 0 1 1 1 1 Glyoxalase-like domain MGS PF02142.22 gi|336252458|ref|YP_004595565.1| - 7.4e-14 51.7 0.0 8.8e-14 51.5 0.0 1.1 1 0 0 1 1 1 1 MGS-like domain TrkA_C PF02080.21 gi|336252459|ref|YP_004595566.1| - 8.2e-18 64.0 0.3 2.8e-17 62.3 0.0 1.9 2 1 0 2 2 2 1 TrkA-C domain Castor_Poll_mid PF06241.12 gi|336252459|ref|YP_004595566.1| - 0.0031 17.5 0.0 0.1 12.6 0.0 2.2 1 1 1 2 2 2 1 Castor and Pollux, part of voltage-gated ion channel ArsA_HSP20 PF17886.1 gi|336252459|ref|YP_004595566.1| - 0.1 12.2 0.1 1.2 8.7 0.0 2.3 2 0 0 2 2 2 0 HSP20-like domain found in ArsA Na_H_Exchanger PF00999.21 gi|336252460|ref|YP_004595567.1| - 9.2e-48 162.9 41.9 1.1e-47 162.6 41.9 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family HAD_2 PF13419.6 gi|336252461|ref|YP_004595568.1| - 2.4e-25 89.7 0.0 2.9e-25 89.4 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|336252461|ref|YP_004595568.1| - 6.6e-16 59.2 1.6 2.2e-15 57.5 1.6 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|336252461|ref|YP_004595568.1| - 7.8e-11 41.9 0.3 1.6e-10 40.9 0.3 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|336252461|ref|YP_004595568.1| - 1.1e-07 32.5 2.2 1.5e-07 32.0 2.2 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Acid_PPase PF12689.7 gi|336252461|ref|YP_004595568.1| - 0.057 13.3 0.0 0.074 12.9 0.0 1.4 1 0 0 1 1 1 0 Acid Phosphatase Hydrolase_6 PF13344.6 gi|336252461|ref|YP_004595568.1| - 0.071 13.2 0.0 0.17 12.0 0.0 1.6 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase Abhydrolase_6 PF12697.7 gi|336252462|ref|YP_004595569.1| - 1.4e-25 91.2 15.3 1.6e-25 91.0 15.3 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|336252462|ref|YP_004595569.1| - 3.1e-18 66.4 0.0 6.3e-14 52.2 0.1 2.1 2 0 0 2 2 2 2 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|336252462|ref|YP_004595569.1| - 3.7e-10 39.5 0.0 6.4e-10 38.7 0.0 1.3 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Thioesterase PF00975.20 gi|336252462|ref|YP_004595569.1| - 0.00044 20.4 0.0 0.00064 19.9 0.0 1.2 1 0 0 1 1 1 1 Thioesterase domain DLH PF01738.18 gi|336252462|ref|YP_004595569.1| - 0.012 15.2 0.0 0.26 10.8 0.0 2.1 2 0 0 2 2 2 0 Dienelactone hydrolase family PGAP1 PF07819.13 gi|336252462|ref|YP_004595569.1| - 0.13 12.0 0.0 9.7 5.8 0.0 2.1 2 0 0 2 2 2 0 PGAP1-like protein TFA2_Winged_2 PF18121.1 gi|336252462|ref|YP_004595569.1| - 0.16 11.6 0.0 0.34 10.6 0.0 1.5 1 0 0 1 1 1 0 TFA2 Winged helix domain 2 Se-cys_synth_N PF12390.8 gi|336252462|ref|YP_004595569.1| - 1.3 9.3 6.6 4.1 7.7 0.0 3.6 4 0 0 4 4 4 0 Selenocysteine synthase N terminal DUF2240 PF09999.9 gi|336252464|ref|YP_004595571.1| - 1.9e-51 173.5 0.1 2.2e-51 173.3 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2240) ABATE PF07336.11 gi|336252464|ref|YP_004595571.1| - 0.011 16.4 3.4 0.017 15.8 3.3 1.5 1 1 0 1 1 1 0 Putative stress-induced transcription regulator RVT_3 PF13456.6 gi|336252465|ref|YP_004595572.1| - 0.00016 21.5 0.0 0.00026 20.8 0.0 1.3 1 0 0 1 1 1 1 Reverse transcriptase-like RNase_H PF00075.24 gi|336252465|ref|YP_004595572.1| - 0.02 15.1 0.0 0.027 14.7 0.0 1.2 1 0 0 1 1 1 0 RNase H SBP_bac_5 PF00496.22 gi|336252466|ref|YP_004595573.1| - 2.6e-68 230.7 1.2 3.3e-68 230.4 1.2 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle ORF_12_N PF18042.1 gi|336252466|ref|YP_004595573.1| - 0.2 12.1 4.0 2.9 8.4 0.2 3.3 3 0 0 3 3 3 0 ORF 12 gene product N-terminal BPD_transp_1 PF00528.22 gi|336252467|ref|YP_004595574.1| - 6.6e-40 136.8 12.0 1.2e-39 136.0 12.0 1.4 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component Sigma_reg_N PF13800.6 gi|336252467|ref|YP_004595574.1| - 2 8.7 4.4 8.4 6.8 0.2 3.0 3 0 0 3 3 3 0 Sigma factor regulator N-terminal BPD_transp_1 PF00528.22 gi|336252468|ref|YP_004595575.1| - 1.1e-33 116.6 9.1 1.1e-33 116.6 9.1 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|336252468|ref|YP_004595575.1| - 0.0022 17.9 0.0 0.0022 17.9 0.0 3.1 4 0 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C ABC_tran PF00005.27 gi|336252469|ref|YP_004595576.1| - 8.9e-24 84.6 0.0 1.6e-23 83.8 0.0 1.4 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|336252469|ref|YP_004595576.1| - 2.8e-17 63.0 0.0 6e-17 61.9 0.0 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|336252469|ref|YP_004595576.1| - 1.7e-07 31.4 0.2 0.00016 21.6 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|336252469|ref|YP_004595576.1| - 0.00087 19.6 0.3 0.12 12.7 0.3 2.3 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.14 gi|336252469|ref|YP_004595576.1| - 0.0056 16.7 0.0 0.026 14.5 0.0 1.9 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) DUF87 PF01935.17 gi|336252469|ref|YP_004595576.1| - 0.019 15.0 0.0 0.062 13.4 0.0 1.7 2 0 0 2 2 2 0 Helicase HerA, central domain AAA_16 PF13191.6 gi|336252469|ref|YP_004595576.1| - 0.021 15.2 0.4 0.061 13.7 0.4 1.9 1 1 0 1 1 1 0 AAA ATPase domain AAA_29 PF13555.6 gi|336252469|ref|YP_004595576.1| - 0.077 12.8 0.0 0.15 11.8 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain SMC_N PF02463.19 gi|336252469|ref|YP_004595576.1| - 0.091 12.2 0.0 6.3 6.2 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain NACHT PF05729.12 gi|336252469|ref|YP_004595576.1| - 0.13 12.2 0.2 0.48 10.3 0.0 2.0 2 1 0 2 2 2 0 NACHT domain DUF2075 PF09848.9 gi|336252469|ref|YP_004595576.1| - 0.13 11.5 0.0 0.23 10.7 0.0 1.4 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_25 PF13481.6 gi|336252469|ref|YP_004595576.1| - 0.14 11.7 0.0 7.3 6.1 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_7 PF12775.7 gi|336252469|ref|YP_004595576.1| - 0.24 10.9 0.0 0.4 10.2 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region ABC_tran PF00005.27 gi|336252470|ref|YP_004595577.1| - 9.5e-33 113.6 0.0 1.5e-32 113.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|336252470|ref|YP_004595577.1| - 1.5e-17 63.8 0.1 3.6e-17 62.6 0.1 1.7 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|336252470|ref|YP_004595577.1| - 8.6e-07 29.0 0.5 0.00026 20.9 0.5 2.4 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|336252470|ref|YP_004595577.1| - 0.00044 20.5 0.7 0.0036 17.6 0.7 2.2 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|336252470|ref|YP_004595577.1| - 0.00098 18.6 0.1 0.0031 17.0 0.1 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_5 PF07728.14 gi|336252470|ref|YP_004595577.1| - 0.096 12.7 0.1 2.7 8.0 0.0 2.4 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_18 PF13238.6 gi|336252470|ref|YP_004595577.1| - 0.1 13.2 0.2 0.56 10.8 0.0 2.4 3 0 0 3 3 3 0 AAA domain AAA_25 PF13481.6 gi|336252470|ref|YP_004595577.1| - 0.12 12.0 0.6 6.4 6.3 0.1 2.5 2 0 0 2 2 2 0 AAA domain AIG1 PF04548.16 gi|336252470|ref|YP_004595577.1| - 0.16 11.3 0.0 0.26 10.6 0.0 1.3 1 0 0 1 1 1 0 AIG1 family TrwB_AAD_bind PF10412.9 gi|336252470|ref|YP_004595577.1| - 0.17 10.7 0.0 0.24 10.3 0.0 1.1 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_16 PF13191.6 gi|336252470|ref|YP_004595577.1| - 0.2 12.0 8.1 0.035 14.5 1.1 2.7 2 2 1 3 3 3 0 AAA ATPase domain Nup96 PF12110.8 gi|336252471|ref|YP_004595578.1| - 0.005 16.0 0.0 0.005 16.0 0.0 1.1 1 0 0 1 1 1 1 Nuclear protein 96 HTH_5 PF01022.20 gi|336252471|ref|YP_004595578.1| - 0.076 12.9 0.1 0.42 10.5 0.0 2.0 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family Peptidase_S76 PF13611.6 gi|336252471|ref|YP_004595578.1| - 0.14 12.5 0.0 0.17 12.2 0.0 1.3 1 0 0 1 1 1 0 Serine peptidase of plant viral polyprotein, P1 EamA PF00892.20 gi|336252472|ref|YP_004595579.1| - 4.6e-37 127.2 25.1 1.4e-20 73.9 9.2 2.1 2 0 0 2 2 2 2 EamA-like transporter family TMEM234 PF10639.9 gi|336252472|ref|YP_004595579.1| - 8.5 6.4 8.8 0.84 9.7 0.4 2.6 3 0 0 3 3 3 0 Putative transmembrane family 234 AAA PF00004.29 gi|336252474|ref|YP_004595581.1| - 2.2e-100 332.3 0.0 2.1e-49 167.3 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.18 gi|336252474|ref|YP_004595581.1| - 1.2e-30 105.5 0.0 6.7e-30 103.1 0.1 2.3 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain AAA_lid_3 PF17862.1 gi|336252474|ref|YP_004595581.1| - 6.5e-30 102.7 2.3 1.4e-14 53.6 1.0 2.6 2 0 0 2 2 2 2 AAA+ lid domain CDC48_2 PF02933.17 gi|336252474|ref|YP_004595581.1| - 1.4e-15 56.8 0.2 8e-15 54.4 0.2 2.2 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), domain 2 RuvB_N PF05496.12 gi|336252474|ref|YP_004595581.1| - 3.2e-15 56.2 0.0 8e-07 28.9 0.0 2.9 3 0 0 3 3 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|336252474|ref|YP_004595581.1| - 8.1e-14 52.4 1.1 1.3e-05 25.7 0.2 4.3 2 2 1 3 3 3 2 AAA ATPase domain AAA_2 PF07724.14 gi|336252474|ref|YP_004595581.1| - 1e-12 48.5 0.0 1.8e-05 24.9 0.0 2.8 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_5 PF07728.14 gi|336252474|ref|YP_004595581.1| - 1.3e-12 47.9 1.9 0.0001 22.3 0.1 4.2 3 2 0 3 3 2 2 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|336252474|ref|YP_004595581.1| - 4.3e-11 43.2 0.5 0.0011 19.2 0.1 4.1 2 2 1 4 4 4 2 AAA domain AAA_33 PF13671.6 gi|336252474|ref|YP_004595581.1| - 1e-10 41.9 0.0 6.8e-05 23.1 0.0 2.7 2 0 0 2 2 2 2 AAA domain TIP49 PF06068.13 gi|336252474|ref|YP_004595581.1| - 1.2e-10 41.2 0.0 0.00041 19.7 0.0 3.2 3 0 0 3 3 3 2 TIP49 P-loop domain IstB_IS21 PF01695.17 gi|336252474|ref|YP_004595581.1| - 8.4e-08 32.2 0.0 0.017 14.9 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_14 PF13173.6 gi|336252474|ref|YP_004595581.1| - 1.2e-07 31.9 0.0 0.005 16.9 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_18 PF13238.6 gi|336252474|ref|YP_004595581.1| - 5.7e-07 30.1 0.0 0.067 13.7 0.0 3.0 3 0 0 3 3 2 2 AAA domain RNA_helicase PF00910.22 gi|336252474|ref|YP_004595581.1| - 6.8e-07 29.6 0.0 0.057 13.8 0.0 2.5 2 0 0 2 2 2 2 RNA helicase Mg_chelatase PF01078.21 gi|336252474|ref|YP_004595581.1| - 1.2e-06 28.0 0.1 0.055 12.8 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_25 PF13481.6 gi|336252474|ref|YP_004595581.1| - 1.4e-06 28.0 1.6 2.1 7.9 0.0 4.4 4 0 0 4 4 4 1 AAA domain AAA_7 PF12775.7 gi|336252474|ref|YP_004595581.1| - 4.9e-06 26.2 0.0 0.12 11.8 0.0 2.5 2 0 0 2 2 2 2 P-loop containing dynein motor region Sigma54_activat PF00158.26 gi|336252474|ref|YP_004595581.1| - 7e-06 25.8 0.0 0.2 11.3 0.0 3.1 3 0 0 3 3 2 2 Sigma-54 interaction domain AAA_3 PF07726.11 gi|336252474|ref|YP_004595581.1| - 7.2e-06 25.9 0.0 0.085 12.7 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 gi|336252474|ref|YP_004595581.1| - 9e-06 26.0 0.0 0.038 14.2 0.0 2.6 2 0 0 2 2 2 2 AAA domain ATPase PF06745.13 gi|336252474|ref|YP_004595581.1| - 2.1e-05 24.0 0.9 0.5 9.7 0.0 3.5 4 0 0 4 4 3 2 KaiC TsaE PF02367.17 gi|336252474|ref|YP_004595581.1| - 2.4e-05 24.3 0.0 0.18 11.8 0.0 2.4 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_24 PF13479.6 gi|336252474|ref|YP_004595581.1| - 3.7e-05 23.6 0.0 0.14 11.9 0.0 2.5 2 0 0 2 2 2 2 AAA domain DUF815 PF05673.13 gi|336252474|ref|YP_004595581.1| - 4.4e-05 22.8 0.0 0.24 10.5 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF815) Vps4_C PF09336.10 gi|336252474|ref|YP_004595581.1| - 5e-05 23.2 0.6 0.015 15.2 0.0 2.9 3 0 0 3 3 2 1 Vps4 C terminal oligomerisation domain PhoH PF02562.16 gi|336252474|ref|YP_004595581.1| - 6.2e-05 22.5 0.8 0.44 10.0 0.0 3.1 3 0 0 3 3 3 2 PhoH-like protein ABC_tran PF00005.27 gi|336252474|ref|YP_004595581.1| - 6.7e-05 23.4 0.0 0.46 11.0 0.0 2.6 2 0 0 2 2 2 2 ABC transporter AAA_30 PF13604.6 gi|336252474|ref|YP_004595581.1| - 7.2e-05 22.6 0.5 0.51 10.0 0.0 3.0 3 0 0 3 3 2 2 AAA domain AAA_11 PF13086.6 gi|336252474|ref|YP_004595581.1| - 7.3e-05 22.7 0.0 0.31 10.8 0.0 2.4 2 0 0 2 2 2 2 AAA domain NB-ARC PF00931.22 gi|336252474|ref|YP_004595581.1| - 0.00013 21.3 0.0 0.12 11.5 0.0 2.4 2 0 0 2 2 2 2 NB-ARC domain ATPase_2 PF01637.18 gi|336252474|ref|YP_004595581.1| - 0.00025 21.1 0.0 0.88 9.4 0.0 3.5 2 2 1 3 3 3 1 ATPase domain predominantly from Archaea DUF2075 PF09848.9 gi|336252474|ref|YP_004595581.1| - 0.0003 20.2 0.0 0.34 10.1 0.0 2.2 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) AAA_17 PF13207.6 gi|336252474|ref|YP_004595581.1| - 0.00038 20.9 0.0 1 9.8 0.0 3.5 4 0 0 4 4 2 1 AAA domain Parvo_NS1 PF01057.17 gi|336252474|ref|YP_004595581.1| - 0.00044 19.4 0.2 0.51 9.4 0.1 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 NACHT PF05729.12 gi|336252474|ref|YP_004595581.1| - 0.00046 20.1 0.2 0.57 10.1 0.0 3.1 3 0 0 3 3 2 1 NACHT domain Zeta_toxin PF06414.12 gi|336252474|ref|YP_004595581.1| - 0.00053 19.3 0.3 0.89 8.8 0.0 2.6 2 0 0 2 2 2 2 Zeta toxin Sigma54_activ_2 PF14532.6 gi|336252474|ref|YP_004595581.1| - 0.0017 18.5 0.0 2.9 8.0 0.0 2.5 2 0 0 2 2 2 1 Sigma-54 interaction domain IPT PF01745.16 gi|336252474|ref|YP_004595581.1| - 0.0018 17.8 0.9 0.54 9.6 0.0 2.8 3 0 0 3 3 3 1 Isopentenyl transferase NTPase_1 PF03266.15 gi|336252474|ref|YP_004595581.1| - 0.0021 18.0 0.3 3.9 7.3 0.0 3.2 2 1 1 3 3 2 0 NTPase AAA_19 PF13245.6 gi|336252474|ref|YP_004595581.1| - 0.0028 18.0 0.8 4.2 7.7 0.0 2.9 2 1 0 3 3 2 0 AAA domain Bac_DnaA PF00308.18 gi|336252474|ref|YP_004595581.1| - 0.0056 16.5 0.0 4.1 7.2 0.0 2.7 2 0 0 2 2 2 0 Bacterial dnaA protein Cytidylate_kin PF02224.18 gi|336252474|ref|YP_004595581.1| - 0.0074 16.0 0.1 4.4 7.0 0.0 2.4 2 0 0 2 2 2 0 Cytidylate kinase Viral_helicase1 PF01443.18 gi|336252474|ref|YP_004595581.1| - 0.015 15.0 0.0 1.2 8.8 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase ResIII PF04851.15 gi|336252474|ref|YP_004595581.1| - 0.021 14.8 0.0 8.8 6.3 0.0 2.5 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit KAP_NTPase PF07693.14 gi|336252474|ref|YP_004595581.1| - 0.023 13.9 0.1 4.6 6.4 0.0 2.8 2 2 0 3 3 3 0 KAP family P-loop domain SKI PF01202.22 gi|336252474|ref|YP_004595581.1| - 0.033 14.3 0.0 7.8 6.6 0.0 2.5 2 0 0 2 2 2 0 Shikimate kinase Hydin_ADK PF17213.3 gi|336252474|ref|YP_004595581.1| - 0.034 14.4 0.0 4.1 7.6 0.0 2.4 2 0 0 2 2 2 0 Hydin Adenylate kinase-like domain Zot PF05707.12 gi|336252474|ref|YP_004595581.1| - 0.042 13.5 0.0 4.3 6.9 0.0 2.6 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) CPT PF07931.12 gi|336252474|ref|YP_004595581.1| - 0.047 13.5 0.0 3.8 7.3 0.0 2.4 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein Rad17 PF03215.15 gi|336252474|ref|YP_004595581.1| - 0.054 13.4 0.0 11 5.9 0.0 2.7 2 1 0 2 2 2 0 Rad17 P-loop domain Torsin PF06309.11 gi|336252474|ref|YP_004595581.1| - 0.056 13.6 0.0 4.6 7.4 0.0 2.4 2 0 0 2 2 2 0 Torsin AFG1_ATPase PF03969.16 gi|336252474|ref|YP_004595581.1| - 0.07 12.0 0.0 1.9 7.3 0.0 2.2 2 0 0 2 2 2 0 AFG1-like ATPase Cytidylate_kin2 PF13189.6 gi|336252474|ref|YP_004595581.1| - 0.092 12.9 0.0 8.8 6.4 0.0 2.4 2 0 0 2 2 2 0 Cytidylate kinase-like family Guanylate_kin PF00625.21 gi|336252474|ref|YP_004595581.1| - 0.25 11.0 0.5 68 3.1 0.0 3.4 3 1 1 4 4 3 0 Guanylate kinase DUF111 PF01969.17 gi|336252475|ref|YP_004595582.1| - 5.9e-135 450.1 5.9 9e-135 449.5 5.9 1.3 1 1 0 1 1 1 1 Protein of unknown function DUF111 Transcrip_reg PF01709.20 gi|336252475|ref|YP_004595582.1| - 0.0067 15.9 0.1 0.032 13.6 0.1 2.1 2 0 0 2 2 2 1 Transcriptional regulator Zip PF02535.22 gi|336252475|ref|YP_004595582.1| - 0.1 11.8 6.3 0.14 11.4 6.3 1.1 1 0 0 1 1 1 0 ZIP Zinc transporter SelP_N PF04592.14 gi|336252475|ref|YP_004595582.1| - 4.7 6.5 19.1 8.2 5.8 19.1 1.3 1 0 0 1 1 1 0 Selenoprotein P, N terminal region DUF460 PF04312.13 gi|336252481|ref|YP_004595588.1| - 0.026 14.2 0.2 0.06 13.0 0.2 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF460) Big_3_3 PF13750.6 gi|336252481|ref|YP_004595588.1| - 0.064 12.9 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 Bacterial Ig-like domain (group 3) Rad51 PF08423.11 gi|336252482|ref|YP_004595589.1| - 5.5e-27 94.6 0.1 2.6e-26 92.4 0.1 1.8 1 1 0 1 1 1 1 Rad51 AAA_25 PF13481.6 gi|336252482|ref|YP_004595589.1| - 2.9e-12 46.6 0.6 4.7e-12 45.9 0.6 1.2 1 0 0 1 1 1 1 AAA domain RecA PF00154.21 gi|336252482|ref|YP_004595589.1| - 5.9e-11 42.3 0.5 2.6e-09 36.9 0.1 2.1 1 1 0 2 2 2 1 recA bacterial DNA recombination protein ATPase PF06745.13 gi|336252482|ref|YP_004595589.1| - 1.8e-09 37.3 0.0 6.3e-09 35.5 0.0 1.8 1 1 0 1 1 1 1 KaiC Zot PF05707.12 gi|336252482|ref|YP_004595589.1| - 7.1e-08 32.3 0.0 1.1e-07 31.6 0.0 1.3 1 0 0 1 1 1 1 Zonular occludens toxin (Zot) AAA_24 PF13479.6 gi|336252482|ref|YP_004595589.1| - 1.1e-06 28.5 0.0 5.6e-06 26.2 0.0 2.1 1 1 0 1 1 1 1 AAA domain DnaB_C PF03796.15 gi|336252482|ref|YP_004595589.1| - 2.6e-06 27.0 0.0 3.5e-06 26.5 0.0 1.1 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 gi|336252482|ref|YP_004595589.1| - 0.05 13.3 0.1 0.15 11.8 0.0 1.7 2 0 0 2 2 2 0 IstB-like ATP binding protein Isochorismatase PF00857.20 gi|336252482|ref|YP_004595589.1| - 0.075 13.2 0.0 0.14 12.3 0.0 1.4 1 0 0 1 1 1 0 Isochorismatase family DUF1805 PF08827.11 gi|336252482|ref|YP_004595589.1| - 0.14 12.5 0.2 0.36 11.2 0.2 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF1805) ATPase_2 PF01637.18 gi|336252482|ref|YP_004595589.1| - 0.16 11.9 0.0 0.21 11.5 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea BAT PF15915.5 gi|336252483|ref|YP_004595590.1| - 1.1e-31 109.8 1.4 1.7e-31 109.2 1.4 1.2 1 0 0 1 1 1 1 GAF and HTH_10 associated domain HTH_10 PF04967.12 gi|336252483|ref|YP_004595590.1| - 1.8e-21 75.7 0.0 2.6e-21 75.2 0.0 1.2 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4_2 PF08281.12 gi|336252483|ref|YP_004595590.1| - 0.0006 19.4 0.2 0.0081 15.8 0.2 2.2 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_Tnp_1_2 PF13022.6 gi|336252483|ref|YP_004595590.1| - 0.048 13.8 0.0 0.088 13.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase CBS PF00571.28 gi|336252484|ref|YP_004595591.1| - 8.6e-36 122.2 11.9 6.9e-12 45.6 1.4 4.5 4 0 0 4 4 4 4 CBS domain Ribosomal_S30AE PF02482.19 gi|336252484|ref|YP_004595591.1| - 0.0031 18.3 0.2 0.01 16.6 0.1 1.9 1 1 0 1 1 1 1 Sigma 54 modulation protein / S30EA ribosomal protein GAF PF01590.26 gi|336252484|ref|YP_004595591.1| - 0.017 15.8 0.1 8.8 7.0 0.0 3.1 2 2 1 3 3 3 0 GAF domain DUF3126 PF11324.8 gi|336252484|ref|YP_004595591.1| - 0.038 13.8 0.4 0.85 9.5 0.2 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3126) CAP PF00188.26 gi|336252486|ref|YP_004595593.1| - 3.8e-12 47.2 0.1 5.7e-12 46.6 0.1 1.3 1 0 0 1 1 1 1 Cysteine-rich secretory protein family Virul_fac_BrkB PF03631.15 gi|336252487|ref|YP_004595594.1| - 2.4e-45 155.2 26.2 2.7e-45 155.0 26.2 1.0 1 0 0 1 1 1 1 Virulence factor BrkB PRCC PF10253.9 gi|336252488|ref|YP_004595595.1| - 1.4 9.7 10.6 2 9.2 10.6 1.3 1 0 0 1 1 1 0 Mitotic checkpoint regulator, MAD2B-interacting Mem_trans PF03547.18 gi|336252489|ref|YP_004595596.1| - 2.4e-23 82.2 23.0 3.6e-14 52.0 12.2 2.0 1 1 1 2 2 2 2 Membrane transport protein DUF412 PF04217.13 gi|336252489|ref|YP_004595596.1| - 0.55 10.1 2.5 0.74 9.7 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function, DUF412 Glycos_transf_3 PF00591.21 gi|336252490|ref|YP_004595597.1| - 3.7e-98 328.1 2.9 4.9e-98 327.7 2.9 1.1 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.17 gi|336252490|ref|YP_004595597.1| - 1.1e-16 60.4 7.0 2.1e-16 59.5 4.4 2.3 2 0 0 2 2 2 1 Glycosyl transferase family, helical bundle domain DUF2717 PF10911.8 gi|336252490|ref|YP_004595597.1| - 0.0094 15.6 0.0 0.025 14.3 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF2717) PRAI PF00697.22 gi|336252491|ref|YP_004595598.1| - 1e-41 142.9 0.0 1.2e-41 142.7 0.0 1.0 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase FMN_dh PF01070.18 gi|336252491|ref|YP_004595598.1| - 0.059 12.4 0.0 0.23 10.5 0.0 1.9 1 1 0 1 1 1 0 FMN-dependent dehydrogenase TMP-TENI PF02581.17 gi|336252491|ref|YP_004595598.1| - 0.07 12.5 0.1 0.21 10.9 0.0 1.9 2 0 0 2 2 2 0 Thiamine monophosphate synthase Chorismate_bind PF00425.18 gi|336252492|ref|YP_004595599.1| - 4.4e-91 305.0 0.0 8.8e-90 300.7 0.0 2.1 2 0 0 2 2 2 1 chorismate binding enzyme Anth_synt_I_N PF04715.13 gi|336252492|ref|YP_004595599.1| - 4.2e-18 65.9 0.1 1.9e-15 57.3 0.0 3.5 2 1 0 2 2 2 1 Anthranilate synthase component I, N terminal region GATase PF00117.28 gi|336252493|ref|YP_004595600.1| - 1.9e-45 155.0 0.0 2.1e-45 154.8 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|336252493|ref|YP_004595600.1| - 7e-07 29.2 0.1 3.3e-06 27.0 0.1 1.8 1 1 0 1 1 1 1 Peptidase C26 HTH_CodY PF08222.11 gi|336252494|ref|YP_004595601.1| - 0.18 11.4 1.6 0.27 10.8 1.6 1.3 1 1 0 1 1 1 0 CodY helix-turn-helix domain VPDSG-CTERM PF18205.1 gi|336252494|ref|YP_004595601.1| - 6.1 6.8 9.2 1.9 8.4 5.8 2.0 2 0 0 2 2 2 0 VPDSG-CTERM motif Ribonuc_red_lgC PF02867.15 gi|336252495|ref|YP_004595602.1| - 2.3e-155 518.1 0.0 2.8e-155 517.8 0.0 1.1 1 0 0 1 1 1 1 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.21 gi|336252495|ref|YP_004595602.1| - 5.2e-25 87.3 0.1 2e-24 85.4 0.0 2.1 2 0 0 2 2 2 1 Ribonucleotide reductase, all-alpha domain DUF2461 PF09365.10 gi|336252495|ref|YP_004595602.1| - 0.00087 19.3 0.1 0.042 13.8 0.0 3.1 3 0 0 3 3 3 1 Conserved hypothetical protein (DUF2461) zf-ACC PF17848.1 gi|336252496|ref|YP_004595603.1| - 0.083 13.0 4.0 0.83 9.8 4.0 2.1 1 1 0 1 1 1 0 Acetyl-coA carboxylase zinc finger domain zf-Mss51 PF13824.6 gi|336252496|ref|YP_004595603.1| - 0.14 12.3 8.1 0.16 12.1 8.1 1.1 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Ogr_Delta PF04606.12 gi|336252496|ref|YP_004595603.1| - 0.19 11.7 6.2 0.29 11.1 6.2 1.5 1 1 0 1 1 1 0 Ogr/Delta-like zinc finger ATPase PF06745.13 gi|336252497|ref|YP_004595604.1| - 2.7e-45 154.5 0.0 3e-45 154.4 0.0 1.0 1 0 0 1 1 1 1 KaiC GvpD PF07088.11 gi|336252497|ref|YP_004595604.1| - 9.7e-08 31.1 0.1 0.0011 17.7 0.0 2.7 2 1 1 3 3 3 2 GvpD gas vesicle protein DnaB_C PF03796.15 gi|336252497|ref|YP_004595604.1| - 1.7e-06 27.5 0.0 3e-06 26.8 0.0 1.3 1 1 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_25 PF13481.6 gi|336252497|ref|YP_004595604.1| - 0.0002 21.0 0.0 0.0007 19.2 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.6 gi|336252497|ref|YP_004595604.1| - 0.00045 20.2 0.0 0.0021 18.1 0.0 2.1 3 0 0 3 3 2 1 AAA domain AAA_24 PF13479.6 gi|336252497|ref|YP_004595604.1| - 0.00053 19.8 0.0 0.0021 17.8 0.0 1.8 1 1 1 2 2 2 1 AAA domain AAA PF00004.29 gi|336252497|ref|YP_004595604.1| - 0.00095 19.6 0.2 0.0073 16.7 0.2 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|336252497|ref|YP_004595604.1| - 0.0051 17.1 0.0 0.0071 16.6 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|336252497|ref|YP_004595604.1| - 0.0057 16.9 0.0 0.17 12.1 0.0 2.1 2 0 0 2 2 2 1 AAA domain ATP_bind_1 PF03029.17 gi|336252497|ref|YP_004595604.1| - 0.0071 16.2 0.0 0.015 15.1 0.0 1.6 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein AAA_33 PF13671.6 gi|336252497|ref|YP_004595604.1| - 0.0091 16.2 0.0 0.018 15.2 0.0 1.7 1 1 0 1 1 1 1 AAA domain Rad51 PF08423.11 gi|336252497|ref|YP_004595604.1| - 0.012 14.9 0.1 0.022 14.0 0.1 1.4 1 0 0 1 1 1 0 Rad51 AAA_18 PF13238.6 gi|336252497|ref|YP_004595604.1| - 0.015 15.9 0.0 0.028 15.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain RecA PF00154.21 gi|336252497|ref|YP_004595604.1| - 0.016 14.7 0.1 0.45 9.9 0.0 2.6 3 0 0 3 3 3 0 recA bacterial DNA recombination protein AAA_16 PF13191.6 gi|336252497|ref|YP_004595604.1| - 0.019 15.3 0.0 0.032 14.6 0.0 1.4 1 0 0 1 1 1 0 AAA ATPase domain ATPase_2 PF01637.18 gi|336252497|ref|YP_004595604.1| - 0.019 14.9 0.0 0.026 14.4 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea T2SSE PF00437.20 gi|336252497|ref|YP_004595604.1| - 0.031 13.3 0.0 0.049 12.7 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein PAXNEB PF05625.11 gi|336252497|ref|YP_004595604.1| - 0.033 13.3 0.1 0.62 9.1 0.0 2.0 1 1 0 2 2 2 0 PAXNEB protein cobW PF02492.19 gi|336252497|ref|YP_004595604.1| - 0.044 13.4 0.0 0.14 11.7 0.0 1.8 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain IstB_IS21 PF01695.17 gi|336252497|ref|YP_004595604.1| - 0.046 13.5 0.0 0.078 12.7 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein NB-ARC PF00931.22 gi|336252497|ref|YP_004595604.1| - 0.056 12.6 0.0 0.084 12.1 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain DUF2075 PF09848.9 gi|336252497|ref|YP_004595604.1| - 0.058 12.6 0.0 0.071 12.3 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) NTPase_1 PF03266.15 gi|336252497|ref|YP_004595604.1| - 0.066 13.1 0.3 0.19 11.6 0.1 1.8 2 0 0 2 2 2 0 NTPase RNA_helicase PF00910.22 gi|336252497|ref|YP_004595604.1| - 0.067 13.6 0.1 0.14 12.6 0.0 1.6 1 1 0 1 1 1 0 RNA helicase Viral_helicase1 PF01443.18 gi|336252497|ref|YP_004595604.1| - 0.083 12.6 0.0 0.12 12.1 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase NACHT PF05729.12 gi|336252497|ref|YP_004595604.1| - 0.12 12.3 0.0 0.18 11.7 0.0 1.3 1 0 0 1 1 1 0 NACHT domain AAA_30 PF13604.6 gi|336252497|ref|YP_004595604.1| - 0.12 12.1 0.0 0.23 11.1 0.0 1.4 2 0 0 2 2 1 0 AAA domain AAA_17 PF13207.6 gi|336252497|ref|YP_004595604.1| - 0.13 12.7 0.2 0.24 11.8 0.2 1.4 1 0 0 1 1 1 0 AAA domain AAA_11 PF13086.6 gi|336252497|ref|YP_004595604.1| - 0.15 11.8 0.0 0.2 11.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain MEDS PF14417.6 gi|336252497|ref|YP_004595604.1| - 0.16 11.8 0.0 0.38 10.6 0.0 1.4 1 1 0 1 1 1 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain GspL_C PF12693.7 gi|336252498|ref|YP_004595605.1| - 0.13 12.1 0.1 0.21 11.4 0.1 1.3 1 0 0 1 1 1 0 GspL periplasmic domain SNARE_assoc PF09335.11 gi|336252499|ref|YP_004595606.1| - 9.9e-14 51.9 0.7 9.9e-14 51.9 0.7 1.9 2 0 0 2 2 2 1 SNARE associated Golgi protein bPH_1 PF08000.11 gi|336252501|ref|YP_004595608.1| - 0.092 12.8 0.0 0.18 11.9 0.0 1.4 1 0 0 1 1 1 0 Bacterial PH domain SlyX PF04102.12 gi|336252501|ref|YP_004595608.1| - 0.12 13.0 4.1 0.43 11.2 4.1 2.0 1 0 0 1 1 1 0 SlyX HalOD1 PF18545.1 gi|336252502|ref|YP_004595609.1| - 6.3e-22 77.6 1.9 8.8e-22 77.2 1.9 1.2 1 0 0 1 1 1 1 Halobacterial output domain 1 N6_N4_Mtase PF01555.18 gi|336252503|ref|YP_004595610.1| - 1.3e-34 119.9 0.0 1.7e-34 119.6 0.0 1.1 1 0 0 1 1 1 1 DNA methylase UPF0020 PF01170.18 gi|336252503|ref|YP_004595610.1| - 0.078 12.7 0.0 5.4 6.6 0.0 2.3 2 0 0 2 2 2 0 Putative RNA methylase family UPF0020 Methyltransf_11 PF08241.12 gi|336252503|ref|YP_004595610.1| - 0.13 12.9 0.3 11 6.7 0.2 3.1 2 1 0 2 2 2 0 Methyltransferase domain Peptidase_S46 PF10459.9 gi|336252504|ref|YP_004595611.1| - 0.0032 16.2 0.2 0.0048 15.6 0.2 1.1 1 0 0 1 1 1 1 Peptidase S46 PEP-CTERM PF07589.11 gi|336252504|ref|YP_004595611.1| - 7.6 6.8 11.3 2.1 8.6 1.8 2.5 2 0 0 2 2 2 0 PEP-CTERM motif FMN_red PF03358.15 gi|336252506|ref|YP_004595613.1| - 3.9e-35 120.9 0.0 4.6e-35 120.7 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|336252506|ref|YP_004595613.1| - 1.1e-10 41.5 0.0 1.6e-10 41.0 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold ABC_tran PF00005.27 gi|336252507|ref|YP_004595614.1| - 9.4e-30 103.9 0.0 1.4e-29 103.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|336252507|ref|YP_004595614.1| - 1.2e-14 54.9 0.0 8.6e-10 38.9 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|336252507|ref|YP_004595614.1| - 9.1e-08 32.7 0.0 1.7e-07 31.9 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_29 PF13555.6 gi|336252507|ref|YP_004595614.1| - 0.0033 17.1 0.0 0.0072 16.1 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|336252507|ref|YP_004595614.1| - 0.0096 15.7 0.0 2.2 7.9 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.19 gi|336252507|ref|YP_004595614.1| - 0.012 15.0 0.0 1.5 8.2 0.0 2.3 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain Rad17 PF03215.15 gi|336252507|ref|YP_004595614.1| - 0.023 14.6 0.0 0.032 14.1 0.0 1.1 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_23 PF13476.6 gi|336252507|ref|YP_004595614.1| - 0.029 14.9 0.8 0.053 14.0 0.7 1.3 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|336252507|ref|YP_004595614.1| - 0.029 14.8 0.0 0.15 12.5 0.0 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|336252507|ref|YP_004595614.1| - 0.031 14.7 0.1 0.073 13.5 0.1 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.6 gi|336252507|ref|YP_004595614.1| - 0.04 13.6 0.0 0.072 12.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain Erythro_esteras PF05139.14 gi|336252507|ref|YP_004595614.1| - 0.079 12.8 0.1 0.14 12.0 0.1 1.3 1 0 0 1 1 1 0 Erythromycin esterase SRP54 PF00448.22 gi|336252507|ref|YP_004595614.1| - 0.08 12.6 0.0 0.12 12.0 0.0 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Mg_chelatase PF01078.21 gi|336252507|ref|YP_004595614.1| - 0.2 11.0 0.0 0.31 10.4 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI ABC2_membrane PF01061.24 gi|336252508|ref|YP_004595615.1| - 2.7e-33 115.2 10.8 3.3e-33 114.9 10.8 1.1 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|336252508|ref|YP_004595615.1| - 8.5e-17 61.3 8.9 8.5e-17 61.3 8.9 1.5 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|336252508|ref|YP_004595615.1| - 0.0045 16.3 16.8 0.013 14.8 16.8 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein Fusion_gly PF00523.18 gi|336252508|ref|YP_004595615.1| - 0.12 10.6 2.5 0.17 10.1 2.5 1.3 1 0 0 1 1 1 0 Fusion glycoprotein F0 HhH-GPD PF00730.25 gi|336252509|ref|YP_004595616.1| - 7.5e-17 61.7 0.0 1.2e-16 61.0 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|336252509|ref|YP_004595616.1| - 1.7e-09 37.0 0.0 3.7e-09 36.0 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif CitG PF01874.16 gi|336252510|ref|YP_004595617.1| - 3e-67 227.2 4.6 3.3e-67 227.1 4.6 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase DUF447 PF04289.12 gi|336252511|ref|YP_004595618.1| - 2.2e-40 138.3 0.0 2.7e-40 138.0 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF447) DUF5337 PF17272.2 gi|336252512|ref|YP_004595619.1| - 0.39 10.6 8.1 1.3 8.9 8.1 1.9 1 0 0 1 1 1 0 Family of unknown function (DUF5337) Phage_holin_3_6 PF07332.11 gi|336252512|ref|YP_004595619.1| - 0.84 9.7 26.1 0.1 12.7 10.8 2.4 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III DUF2628 PF10947.8 gi|336252512|ref|YP_004595619.1| - 5.1 7.5 17.6 0.34 11.3 0.9 3.1 2 2 0 3 3 3 0 Protein of unknown function (DUF2628) DUF4131 PF13567.6 gi|336252512|ref|YP_004595619.1| - 10 5.8 9.1 0.35 10.5 2.2 2.0 2 1 0 2 2 2 0 Domain of unknown function (DUF4131) Ribosomal_S17e PF00833.18 gi|336252513|ref|YP_004595620.1| - 1.7e-12 47.3 0.1 2.1e-12 47.0 0.1 1.0 1 0 0 1 1 1 1 Ribosomal S17 HNF-1_N PF04814.13 gi|336252513|ref|YP_004595620.1| - 0.067 13.8 0.0 0.067 13.8 0.0 1.0 1 0 0 1 1 1 0 Hepatocyte nuclear factor 1 (HNF-1), N terminus DUF4019 PF13211.6 gi|336252513|ref|YP_004595620.1| - 0.079 13.4 0.0 0.099 13.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4019) DctQ PF04290.12 gi|336252514|ref|YP_004595621.1| - 0.22 11.5 6.2 0.31 11.0 6.2 1.2 1 0 0 1 1 1 0 Tripartite ATP-independent periplasmic transporters, DctQ component OppC_N PF12911.7 gi|336252514|ref|YP_004595621.1| - 3.1 7.8 7.6 8.2 6.5 2.6 2.1 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C Semialdhyde_dh PF01118.24 gi|336252515|ref|YP_004595622.1| - 2.2e-35 121.7 0.0 3.6e-35 121.0 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 gi|336252515|ref|YP_004595622.1| - 6.5e-29 101.3 0.0 1e-28 100.7 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain DapB_N PF01113.20 gi|336252515|ref|YP_004595622.1| - 8.9e-05 22.6 0.0 0.00016 21.8 0.0 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus DXP_reductoisom PF02670.16 gi|336252515|ref|YP_004595622.1| - 9.7e-05 23.1 0.0 0.00018 22.2 0.0 1.4 1 0 0 1 1 1 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase Gp_dh_C PF02800.20 gi|336252515|ref|YP_004595622.1| - 0.0019 17.8 0.0 0.0039 16.8 0.0 1.5 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain GFO_IDH_MocA PF01408.22 gi|336252515|ref|YP_004595622.1| - 0.027 15.3 0.0 0.054 14.3 0.0 1.5 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold HTH_20 PF12840.7 gi|336252516|ref|YP_004595623.1| - 8.8e-06 25.7 0.5 8.6e-05 22.5 0.5 2.3 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|336252516|ref|YP_004595623.1| - 0.061 13.2 0.0 0.13 12.2 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Usp PF00582.26 gi|336252517|ref|YP_004595624.1| - 1.2e-10 42.0 0.4 1.4e-10 41.8 0.4 1.0 1 0 0 1 1 1 1 Universal stress protein family 2-Hacid_dh_C PF02826.19 gi|336252518|ref|YP_004595625.1| - 1.5e-53 180.8 0.0 2.2e-53 180.3 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|336252518|ref|YP_004595625.1| - 7.3e-12 45.1 0.0 8.6e-12 44.9 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IlvN PF07991.12 gi|336252518|ref|YP_004595625.1| - 0.0073 15.9 0.0 0.096 12.3 0.0 2.1 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain ThiF PF00899.21 gi|336252518|ref|YP_004595625.1| - 0.0084 15.5 0.0 0.013 14.8 0.0 1.3 1 0 0 1 1 1 1 ThiF family NAD_binding_7 PF13241.6 gi|336252518|ref|YP_004595625.1| - 0.013 15.9 0.0 0.03 14.8 0.0 1.6 1 0 0 1 1 1 0 Putative NAD(P)-binding F420_oxidored PF03807.17 gi|336252518|ref|YP_004595625.1| - 0.02 15.4 0.0 0.043 14.4 0.0 1.6 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent DUF4440 PF14534.6 gi|336252518|ref|YP_004595625.1| - 0.021 15.2 0.1 0.26 11.7 0.0 2.6 2 1 1 3 3 3 0 Domain of unknown function (DUF4440) TrkA_N PF02254.18 gi|336252518|ref|YP_004595625.1| - 0.052 13.8 0.8 0.96 9.7 0.1 2.8 3 0 0 3 3 3 0 TrkA-N domain DAO PF01266.24 gi|336252519|ref|YP_004595626.1| - 6.3e-11 42.4 2.7 1.7e-05 24.6 0.0 2.4 1 1 1 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|336252519|ref|YP_004595626.1| - 8.9e-11 41.6 0.0 6.3e-06 25.6 0.2 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|336252519|ref|YP_004595626.1| - 2.9e-08 33.3 0.1 0.00097 18.5 0.1 2.1 2 0 0 2 2 2 2 FAD binding domain NAD_binding_9 PF13454.6 gi|336252519|ref|YP_004595626.1| - 2.2e-06 27.8 0.3 0.023 14.7 0.0 2.5 3 0 0 3 3 3 2 FAD-NAD(P)-binding HI0933_like PF03486.14 gi|336252519|ref|YP_004595626.1| - 6.6e-06 25.1 0.5 0.00071 18.4 1.3 2.1 2 0 0 2 2 2 1 HI0933-like protein FAD_oxidored PF12831.7 gi|336252519|ref|YP_004595626.1| - 6.9e-06 25.7 0.0 1.2e-05 24.9 0.0 1.5 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|336252519|ref|YP_004595626.1| - 8.5e-05 21.8 0.4 0.00018 20.7 0.4 1.6 2 0 0 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.6 gi|336252519|ref|YP_004595626.1| - 0.00012 22.2 0.2 0.00035 20.7 0.2 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Trp_halogenase PF04820.14 gi|336252519|ref|YP_004595626.1| - 0.0003 19.8 0.2 0.039 12.8 0.0 2.1 2 0 0 2 2 2 1 Tryptophan halogenase GIDA PF01134.22 gi|336252519|ref|YP_004595626.1| - 0.00034 19.8 3.4 0.00051 19.2 0.1 2.3 3 0 0 3 3 3 1 Glucose inhibited division protein A Lycopene_cycl PF05834.12 gi|336252519|ref|YP_004595626.1| - 0.024 13.7 0.2 0.1 11.6 0.2 1.8 2 0 0 2 2 2 0 Lycopene cyclase protein Thi4 PF01946.17 gi|336252519|ref|YP_004595626.1| - 0.041 13.1 0.0 0.074 12.3 0.0 1.4 1 0 0 1 1 1 0 Thi4 family AlaDh_PNT_C PF01262.21 gi|336252519|ref|YP_004595626.1| - 0.046 13.0 0.1 0.069 12.4 0.1 1.2 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox PF00070.27 gi|336252519|ref|YP_004595626.1| - 0.065 13.8 0.1 1.3 9.6 0.3 2.3 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Amino_oxidase PF01593.24 gi|336252519|ref|YP_004595626.1| - 0.091 12.0 0.0 0.17 11.2 0.0 1.3 1 0 0 1 1 1 0 Flavin containing amine oxidoreductase Pyr_redox_3 PF13738.6 gi|336252519|ref|YP_004595626.1| - 0.2 10.8 0.3 0.54 9.5 0.4 1.6 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase HTH_20 PF12840.7 gi|336252521|ref|YP_004595628.1| - 1.6e-12 47.3 0.7 2.5e-12 46.7 0.3 1.5 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|336252521|ref|YP_004595628.1| - 0.00033 20.4 0.1 0.00062 19.5 0.1 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|336252521|ref|YP_004595628.1| - 0.0017 18.2 0.2 0.0041 17.0 0.1 1.6 2 0 0 2 2 2 1 MarR family pXO2-72 PF17443.2 gi|336252521|ref|YP_004595628.1| - 0.0029 17.8 0.0 0.0042 17.3 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized protein pXO2-72 TrmB PF01978.19 gi|336252521|ref|YP_004595628.1| - 0.0036 17.1 0.0 0.007 16.2 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|336252521|ref|YP_004595628.1| - 0.0062 16.4 0.6 0.0086 15.9 0.1 1.6 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_7 PF02796.15 gi|336252521|ref|YP_004595628.1| - 0.016 15.3 0.0 0.033 14.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_11 PF08279.12 gi|336252521|ref|YP_004595628.1| - 0.022 14.7 0.1 0.045 13.7 0.1 1.5 1 0 0 1 1 1 0 HTH domain FUR PF01475.19 gi|336252521|ref|YP_004595628.1| - 0.066 13.4 0.0 0.1 12.7 0.0 1.5 1 1 0 1 1 1 0 Ferric uptake regulator family Rax2 PF12768.7 gi|336252522|ref|YP_004595629.1| - 0.066 12.7 0.6 0.13 11.7 0.6 1.4 1 0 0 1 1 1 0 Cortical protein marker for cell polarity DUF485 PF04341.12 gi|336252522|ref|YP_004595629.1| - 8.8 6.4 9.7 0.96 9.4 4.3 1.9 1 1 1 2 2 2 0 Protein of unknown function, DUF485 Cu-oxidase_2 PF07731.14 gi|336252523|ref|YP_004595630.1| - 7.2e-29 100.3 6.9 6.4e-16 58.3 0.1 2.9 2 1 0 2 2 2 2 Multicopper oxidase Cu-oxidase_3 PF07732.15 gi|336252523|ref|YP_004595630.1| - 6.2e-23 81.1 2.1 7.9e-17 61.4 0.3 2.4 2 1 0 2 2 2 2 Multicopper oxidase Cu-oxidase PF00394.22 gi|336252523|ref|YP_004595630.1| - 3.9e-11 43.3 0.0 9.6e-11 42.0 0.0 1.7 2 0 0 2 2 2 1 Multicopper oxidase Cupredoxin_1 PF13473.6 gi|336252523|ref|YP_004595630.1| - 0.016 15.3 0.0 1.1 9.5 0.0 2.7 2 1 0 2 2 2 0 Cupredoxin-like domain Pyr_redox_2 PF07992.14 gi|336252524|ref|YP_004595631.1| - 5.4e-66 222.8 3.9 5.4e-66 222.8 3.9 1.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|336252524|ref|YP_004595631.1| - 8.1e-37 125.8 0.8 1.5e-36 125.0 0.1 1.9 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 gi|336252524|ref|YP_004595631.1| - 3.3e-24 85.3 1.5 2.7e-20 72.7 0.0 3.4 4 0 0 4 4 3 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|336252524|ref|YP_004595631.1| - 3e-11 43.0 1.4 4.5e-08 32.6 0.7 2.4 2 0 0 2 2 2 2 Glucose inhibited division protein A Pyr_redox_3 PF13738.6 gi|336252524|ref|YP_004595631.1| - 2.3e-08 33.7 0.1 0.0041 16.4 0.1 3.1 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|336252524|ref|YP_004595631.1| - 2.4e-08 33.5 7.2 4.5e-06 26.0 0.4 3.2 3 0 0 3 3 3 1 FAD binding domain NAD_binding_8 PF13450.6 gi|336252524|ref|YP_004595631.1| - 3.5e-08 33.5 0.5 0.003 17.7 0.2 2.5 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|336252524|ref|YP_004595631.1| - 9.6e-08 31.1 3.1 1.3e-05 24.1 0.1 2.6 3 0 0 3 3 3 2 HI0933-like protein AlaDh_PNT_C PF01262.21 gi|336252524|ref|YP_004595631.1| - 6e-07 29.0 2.9 0.0096 15.2 0.6 3.2 3 0 0 3 3 3 2 Alanine dehydrogenase/PNT, C-terminal domain FAD_oxidored PF12831.7 gi|336252524|ref|YP_004595631.1| - 3.9e-06 26.5 0.4 3.9e-06 26.5 0.4 1.9 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|336252524|ref|YP_004595631.1| - 1.5e-05 24.4 2.3 0.036 13.3 0.2 2.3 2 0 0 2 2 2 2 FAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|336252524|ref|YP_004595631.1| - 2.1e-05 24.2 0.6 0.00098 18.7 0.0 2.4 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.18 gi|336252524|ref|YP_004595631.1| - 0.00016 21.6 0.2 0.0011 18.9 0.0 2.2 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Thi4 PF01946.17 gi|336252524|ref|YP_004595631.1| - 0.00022 20.6 2.8 0.048 12.9 0.3 3.0 3 0 0 3 3 3 2 Thi4 family DAO PF01266.24 gi|336252524|ref|YP_004595631.1| - 0.00031 20.4 14.9 0.027 14.1 1.1 3.6 3 1 1 4 4 4 3 FAD dependent oxidoreductase NAD_binding_7 PF13241.6 gi|336252524|ref|YP_004595631.1| - 0.00083 19.8 0.2 1.2 9.7 0.0 2.7 2 0 0 2 2 2 2 Putative NAD(P)-binding Lycopene_cycl PF05834.12 gi|336252524|ref|YP_004595631.1| - 0.00089 18.4 3.2 0.13 11.3 0.6 2.4 2 1 0 2 2 2 2 Lycopene cyclase protein TrkA_N PF02254.18 gi|336252524|ref|YP_004595631.1| - 0.0015 18.7 0.2 0.44 10.8 0.0 2.8 2 0 0 2 2 2 1 TrkA-N domain Trp_halogenase PF04820.14 gi|336252524|ref|YP_004595631.1| - 0.0066 15.4 1.5 0.029 13.2 0.1 2.1 2 0 0 2 2 2 1 Tryptophan halogenase 2-Hacid_dh_C PF02826.19 gi|336252524|ref|YP_004595631.1| - 0.028 13.8 0.2 0.87 8.9 0.0 2.8 3 0 0 3 3 3 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain XdhC_C PF13478.6 gi|336252524|ref|YP_004595631.1| - 0.037 14.5 5.4 0.26 11.8 1.5 3.3 3 1 0 3 3 2 0 XdhC Rossmann domain 2-oxoacid_dh PF00198.23 gi|336252525|ref|YP_004595632.1| - 3.1e-89 298.4 0.0 4.1e-89 298.0 0.0 1.2 1 0 0 1 1 1 1 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Biotin_lipoyl PF00364.22 gi|336252525|ref|YP_004595632.1| - 4.6e-24 84.0 2.0 9.2e-24 83.1 2.0 1.5 1 0 0 1 1 1 1 Biotin-requiring enzyme E3_binding PF02817.17 gi|336252525|ref|YP_004595632.1| - 1.6e-22 79.6 0.8 5.7e-16 58.6 0.1 3.1 3 0 0 3 3 3 2 e3 binding domain Biotin_lipoyl_2 PF13533.6 gi|336252525|ref|YP_004595632.1| - 5.4e-07 29.3 0.9 0.003 17.3 0.4 2.7 1 1 1 2 2 2 2 Biotin-lipoyl like GCV_H PF01597.19 gi|336252525|ref|YP_004595632.1| - 2.1e-05 24.4 0.8 5.4e-05 23.1 0.8 1.8 1 0 0 1 1 1 1 Glycine cleavage H-protein RnfC_N PF13375.6 gi|336252525|ref|YP_004595632.1| - 0.002 18.1 0.5 0.0043 17.0 0.5 1.6 1 0 0 1 1 1 1 RnfC Barrel sandwich hybrid domain HlyD_3 PF13437.6 gi|336252525|ref|YP_004595632.1| - 0.008 16.9 2.7 0.15 12.8 0.3 2.6 1 1 1 2 2 2 1 HlyD family secretion protein HlyD_D23 PF16576.5 gi|336252525|ref|YP_004595632.1| - 0.027 13.7 0.0 0.07 12.3 0.0 1.7 1 0 0 1 1 1 0 Barrel-sandwich domain of CusB or HlyD membrane-fusion PTS_EIIA_1 PF00358.20 gi|336252525|ref|YP_004595632.1| - 0.05 13.4 0.3 6.2 6.6 0.0 2.5 1 1 1 2 2 2 0 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 Transket_pyr PF02779.24 gi|336252526|ref|YP_004595633.1| - 1.1e-52 178.3 0.0 1.4e-52 177.9 0.0 1.1 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.20 gi|336252526|ref|YP_004595633.1| - 2e-35 121.4 0.0 3.5e-35 120.6 0.0 1.4 1 0 0 1 1 1 1 Transketolase, C-terminal domain E1_dh PF00676.20 gi|336252527|ref|YP_004595634.1| - 4e-88 295.2 0.0 4.7e-88 295.0 0.0 1.0 1 0 0 1 1 1 1 Dehydrogenase E1 component DXP_synthase_N PF13292.6 gi|336252527|ref|YP_004595634.1| - 2.2e-07 30.4 0.0 3.2e-07 29.8 0.0 1.2 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase TPP_enzyme_C PF02775.21 gi|336252527|ref|YP_004595634.1| - 0.00043 20.1 0.3 0.0015 18.3 0.1 2.0 2 1 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HTH_41 PF14502.6 gi|336252527|ref|YP_004595634.1| - 0.014 15.1 0.0 0.032 13.9 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Band_7 PF01145.25 gi|336252528|ref|YP_004595635.1| - 0.00018 21.6 0.0 0.0002 21.4 0.0 1.1 1 0 0 1 1 1 1 SPFH domain / Band 7 family Radical_SAM PF04055.21 gi|336252529|ref|YP_004595636.1| - 1.5e-13 51.5 0.3 4.2e-13 50.0 0.2 1.8 2 0 0 2 2 2 1 Radical SAM superfamily LIAS_N PF16881.5 gi|336252529|ref|YP_004595636.1| - 2.3e-10 40.8 0.0 5e-10 39.8 0.0 1.5 1 0 0 1 1 1 1 N-terminal domain of lipoyl synthase of Radical_SAM family B12-binding PF02310.19 gi|336252529|ref|YP_004595636.1| - 0.013 15.5 0.1 3.9 7.5 0.0 3.0 1 1 2 3 3 3 0 B12 binding domain MatE PF01554.18 gi|336252530|ref|YP_004595637.1| - 1.6e-47 161.2 25.5 6.9e-27 94.1 10.0 2.4 2 0 0 2 2 2 2 MatE Polysacc_synt_C PF14667.6 gi|336252530|ref|YP_004595637.1| - 1.2e-08 35.2 3.2 1.2e-08 35.2 3.2 4.5 4 1 0 4 4 4 2 Polysaccharide biosynthesis C-terminal domain Methyltransf_11 PF08241.12 gi|336252531|ref|YP_004595638.1| - 5.7e-28 97.4 0.0 9e-28 96.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|336252531|ref|YP_004595638.1| - 7.1e-25 87.6 0.0 1.1e-24 86.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|336252531|ref|YP_004595638.1| - 1.1e-23 83.7 0.0 1.5e-23 83.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|336252531|ref|YP_004595638.1| - 8.1e-22 77.8 0.0 1.1e-21 77.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|336252531|ref|YP_004595638.1| - 7.2e-19 68.0 0.0 1.1e-18 67.5 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|336252531|ref|YP_004595638.1| - 4.7e-16 59.4 0.0 7.1e-16 58.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_29 PF03141.16 gi|336252531|ref|YP_004595638.1| - 1.3e-05 24.0 0.0 1.5e-05 23.8 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase MTS PF05175.14 gi|336252531|ref|YP_004595638.1| - 1.7e-05 24.4 0.0 3.7e-05 23.4 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|336252531|ref|YP_004595638.1| - 4.9e-05 22.9 0.0 6.4e-05 22.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) PCMT PF01135.19 gi|336252531|ref|YP_004595638.1| - 6e-05 22.9 0.0 9.9e-05 22.2 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_9 PF08003.11 gi|336252531|ref|YP_004595638.1| - 9e-05 21.5 0.0 0.0001 21.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) TehB PF03848.14 gi|336252531|ref|YP_004595638.1| - 0.00029 20.3 0.0 0.00041 19.8 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_32 PF13679.6 gi|336252531|ref|YP_004595638.1| - 0.00037 20.5 0.0 0.00049 20.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain GidB PF02527.15 gi|336252531|ref|YP_004595638.1| - 0.001 18.5 0.0 0.0019 17.5 0.0 1.4 1 1 0 1 1 1 1 rRNA small subunit methyltransferase G NodS PF05401.11 gi|336252531|ref|YP_004595638.1| - 0.0013 18.4 0.0 0.0017 18.0 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) TPMT PF05724.11 gi|336252531|ref|YP_004595638.1| - 0.0016 18.2 0.0 0.0022 17.7 0.0 1.3 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) MetW PF07021.12 gi|336252531|ref|YP_004595638.1| - 0.0027 17.3 0.0 0.0045 16.6 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW UPF0020 PF01170.18 gi|336252531|ref|YP_004595638.1| - 0.0055 16.4 0.0 0.01 15.5 0.0 1.5 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_2 PF00891.18 gi|336252531|ref|YP_004595638.1| - 0.0095 15.2 0.0 0.014 14.7 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase domain Methyltransf_18 PF12847.7 gi|336252531|ref|YP_004595638.1| - 0.024 14.6 0.0 0.038 13.9 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_16 PF10294.9 gi|336252531|ref|YP_004595638.1| - 0.027 14.2 0.0 0.039 13.7 0.0 1.2 1 0 0 1 1 1 0 Lysine methyltransferase DREV PF05219.12 gi|336252531|ref|YP_004595638.1| - 0.033 13.3 0.0 0.064 12.3 0.0 1.5 1 1 0 1 1 1 0 DREV methyltransferase CMAS PF02353.20 gi|336252531|ref|YP_004595638.1| - 0.048 13.0 0.0 0.062 12.6 0.0 1.3 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase AdoMet_MTase PF07757.13 gi|336252531|ref|YP_004595638.1| - 0.14 12.5 0.0 0.24 11.7 0.0 1.4 1 0 0 1 1 1 0 Predicted AdoMet-dependent methyltransferase Mur_ligase PF01225.25 gi|336252531|ref|YP_004595638.1| - 0.14 12.5 0.0 0.29 11.5 0.0 1.6 1 0 0 1 1 1 0 Mur ligase family, catalytic domain Methyltransf_15 PF09445.10 gi|336252531|ref|YP_004595638.1| - 0.17 11.5 0.0 0.21 11.2 0.0 1.1 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase bPH_2 PF03703.14 gi|336252532|ref|YP_004595639.1| - 1.3e-16 60.6 0.0 2.5e-16 59.6 0.0 1.4 1 0 0 1 1 1 1 Bacterial PH domain DEAD PF00270.29 gi|336252533|ref|YP_004595640.1| - 6.4e-25 87.9 0.0 2.2e-24 86.2 0.0 1.9 3 0 0 3 3 3 1 DEAD/DEAH box helicase Sec63 PF02889.16 gi|336252533|ref|YP_004595640.1| - 1e-14 54.3 0.0 1.4e-14 53.9 0.0 1.2 1 0 0 1 1 1 1 Sec63 Brl domain ResIII PF04851.15 gi|336252533|ref|YP_004595640.1| - 1.7e-11 44.4 0.0 2.8e-11 43.7 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|336252533|ref|YP_004595640.1| - 5.3e-09 36.4 0.0 2.2e-08 34.4 0.0 2.1 1 1 0 1 1 1 1 Helicase conserved C-terminal domain HHH_5 PF14520.6 gi|336252533|ref|YP_004595640.1| - 6.7e-05 23.4 2.1 0.0001 22.9 0.7 2.1 2 0 0 2 2 2 1 Helix-hairpin-helix domain UTP25 PF06862.12 gi|336252533|ref|YP_004595640.1| - 0.12 11.2 0.0 0.17 10.6 0.0 1.1 1 0 0 1 1 1 0 Utp25, U3 small nucleolar RNA-associated SSU processome protein 25 HAD_2 PF13419.6 gi|336252534|ref|YP_004595641.1| - 5.7e-30 104.7 0.0 6.8e-30 104.5 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|336252534|ref|YP_004595641.1| - 1.8e-17 64.4 0.3 8.5e-17 62.1 0.3 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|336252534|ref|YP_004595641.1| - 7.7e-10 39.5 0.5 8.9e-10 39.3 0.5 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|336252534|ref|YP_004595641.1| - 1.7e-09 37.6 0.2 7.6e-09 35.5 0.1 2.1 2 0 0 2 2 2 1 HAD-hyrolase-like Ufm1 PF03671.14 gi|336252534|ref|YP_004595641.1| - 0.17 12.0 0.0 0.37 10.9 0.0 1.5 1 0 0 1 1 1 0 Ubiquitin fold modifier 1 protein Methyltransf_11 PF08241.12 gi|336252535|ref|YP_004595642.1| - 1e-09 38.9 0.1 1.6e-09 38.3 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|336252535|ref|YP_004595642.1| - 1.5e-09 38.4 0.1 2.7e-09 37.6 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|336252535|ref|YP_004595642.1| - 2.4e-08 34.0 0.0 3.4e-08 33.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|336252535|ref|YP_004595642.1| - 1.5e-05 24.7 0.0 2.9e-05 23.7 0.0 1.4 1 1 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_12 PF08242.12 gi|336252535|ref|YP_004595642.1| - 0.0001 23.0 0.1 0.00025 21.7 0.1 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_9 PF08003.11 gi|336252535|ref|YP_004595642.1| - 0.00016 20.8 0.0 0.0002 20.4 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_31 PF13847.6 gi|336252535|ref|YP_004595642.1| - 0.00025 20.9 0.1 0.00033 20.5 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.14 gi|336252535|ref|YP_004595642.1| - 0.0033 16.9 0.0 0.084 12.3 0.0 2.1 2 0 0 2 2 2 1 Tellurite resistance protein TehB DUF123 PF01986.16 gi|336252535|ref|YP_004595642.1| - 0.039 14.5 1.2 0.16 12.5 0.1 2.0 1 1 1 2 2 2 0 Domain of unknown function DUF123 AF-4 PF05110.13 gi|336252535|ref|YP_004595642.1| - 7.2 4.5 7.2 9.2 4.2 7.2 1.0 1 0 0 1 1 1 0 AF-4 proto-oncoprotein CSD PF00313.22 gi|336252536|ref|YP_004595643.1| - 1.1e-19 70.1 0.2 1.2e-19 69.9 0.2 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain OB_RNB PF08206.11 gi|336252536|ref|YP_004595643.1| - 0.037 13.7 2.4 0.05 13.3 2.4 1.3 1 0 0 1 1 1 0 Ribonuclease B OB domain Peptidase_M10_C PF08548.11 gi|336252536|ref|YP_004595643.1| - 0.089 12.7 0.7 0.092 12.6 0.7 1.1 1 0 0 1 1 1 0 Peptidase M10 serralysin C terminal DJ-1_PfpI PF01965.24 gi|336252537|ref|YP_004595644.1| - 2.2e-28 99.2 0.5 2.6e-28 98.9 0.5 1.1 1 0 0 1 1 1 1 DJ-1/PfpI family GATase_3 PF07685.14 gi|336252537|ref|YP_004595644.1| - 0.00037 20.1 0.0 0.016 14.8 0.0 2.1 1 1 1 2 2 2 2 CobB/CobQ-like glutamine amidotransferase domain DUF2749 PF10907.8 gi|336252538|ref|YP_004595645.1| - 0.018 15.2 0.3 0.046 13.9 0.3 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2749) BUD22 PF09073.10 gi|336252538|ref|YP_004595645.1| - 0.6 9.4 18.0 0.79 9.0 18.0 1.2 1 0 0 1 1 1 0 BUD22 DUF4148 PF13663.6 gi|336252538|ref|YP_004595645.1| - 7.4 6.8 7.4 0.28 11.4 1.4 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4148) DUF4897 PF16238.5 gi|336252539|ref|YP_004595646.1| - 0.0068 16.3 0.0 0.01 15.7 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4897) HTH_27 PF13463.6 gi|336252539|ref|YP_004595646.1| - 0.02 15.4 0.0 0.046 14.2 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_39 PF14090.6 gi|336252539|ref|YP_004595646.1| - 0.098 12.4 0.0 0.19 11.5 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain CdvA PF18822.1 gi|336252540|ref|YP_004595647.1| - 2.3e-07 30.7 2.0 3.8e-07 30.0 1.6 1.6 1 1 0 1 1 1 1 CdvA-like coiled-coil domain AAA_13 PF13166.6 gi|336252540|ref|YP_004595647.1| - 0.006 15.3 1.3 0.0075 15.0 1.3 1.0 1 0 0 1 1 1 1 AAA domain Fmp27_WPPW PF10359.9 gi|336252540|ref|YP_004595647.1| - 0.028 13.3 0.4 0.034 13.0 0.4 1.0 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain DUF724 PF05266.14 gi|336252540|ref|YP_004595647.1| - 0.032 14.1 0.7 0.042 13.7 0.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF724) DUF3450 PF11932.8 gi|336252540|ref|YP_004595647.1| - 0.037 13.3 1.7 0.059 12.7 1.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) DUF2802 PF10975.8 gi|336252540|ref|YP_004595647.1| - 0.063 13.4 0.6 0.69 10.1 0.1 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF2802) ABC_tran_CTD PF16326.5 gi|336252540|ref|YP_004595647.1| - 0.16 12.2 5.8 0.69 10.2 5.1 2.1 1 1 1 2 2 2 0 ABC transporter C-terminal domain SlyX PF04102.12 gi|336252540|ref|YP_004595647.1| - 0.58 10.8 3.4 5.5 7.7 2.5 2.7 1 1 1 2 2 2 0 SlyX FUSC PF04632.12 gi|336252540|ref|YP_004595647.1| - 1.1 7.7 7.2 1.3 7.4 7.2 1.1 1 0 0 1 1 1 0 Fusaric acid resistance protein family MazG PF03819.17 gi|336252541|ref|YP_004595648.1| - 1.5e-07 31.4 0.3 2.3e-07 30.9 0.3 1.2 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain MazG-like PF12643.7 gi|336252541|ref|YP_004595648.1| - 0.0037 17.5 0.1 0.0045 17.2 0.1 1.3 1 0 0 1 1 1 1 MazG-like family Hemerythrin PF01814.23 gi|336252541|ref|YP_004595648.1| - 0.07 13.8 0.7 0.11 13.1 0.6 1.4 1 1 0 1 1 1 0 Hemerythrin HHE cation binding domain HD PF01966.22 gi|336252542|ref|YP_004595649.1| - 1.3e-10 41.6 3.8 3.4e-10 40.2 3.8 1.8 1 1 0 1 1 1 1 HD domain Clp_N PF02861.20 gi|336252542|ref|YP_004595649.1| - 0.0043 17.1 0.1 0.016 15.3 0.1 2.0 1 0 0 1 1 1 1 Clp amino terminal domain, pathogenicity island component AAA_33 PF13671.6 gi|336252543|ref|YP_004595650.1| - 3.6e-20 72.6 0.0 4.5e-20 72.3 0.0 1.1 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|336252543|ref|YP_004595650.1| - 4.4e-06 26.1 0.1 7.1e-06 25.4 0.1 1.4 1 1 0 1 1 1 1 Zeta toxin KTI12 PF08433.10 gi|336252543|ref|YP_004595650.1| - 0.00077 19.0 0.0 0.00086 18.8 0.0 1.1 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_17 PF13207.6 gi|336252543|ref|YP_004595650.1| - 0.0026 18.2 0.1 0.0077 16.7 0.1 1.7 1 1 0 1 1 1 1 AAA domain 6PF2K PF01591.18 gi|336252543|ref|YP_004595650.1| - 0.0079 15.5 0.9 0.64 9.3 0.9 2.4 1 1 0 1 1 1 1 6-phosphofructo-2-kinase AAA_22 PF13401.6 gi|336252543|ref|YP_004595650.1| - 0.01 16.1 0.0 0.026 14.8 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|336252543|ref|YP_004595650.1| - 0.035 14.7 0.1 0.34 11.5 0.1 2.5 1 1 1 2 2 2 0 AAA domain DUF3275 PF11679.8 gi|336252543|ref|YP_004595650.1| - 0.051 13.6 0.1 0.072 13.1 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3275) CPT PF07931.12 gi|336252543|ref|YP_004595650.1| - 0.072 12.9 0.0 0.091 12.6 0.0 1.2 1 0 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein Phosphonate-bd PF12974.7 gi|336252544|ref|YP_004595651.1| - 2.8e-49 167.9 0.1 3.4e-49 167.7 0.1 1.1 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein PTN13_u3 PF16599.5 gi|336252544|ref|YP_004595651.1| - 0.033 14.3 1.8 0.054 13.5 1.8 1.2 1 0 0 1 1 1 0 Unstructured linker region on PTN13 protein between PDZ DUF4177 PF13783.6 gi|336252544|ref|YP_004595651.1| - 0.12 12.7 0.0 1.1 9.6 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4177) ABC_tran PF00005.27 gi|336252545|ref|YP_004595652.1| - 9e-33 113.7 0.1 1.2e-32 113.2 0.1 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|336252545|ref|YP_004595652.1| - 1.3e-06 28.5 0.0 0.018 14.9 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|336252545|ref|YP_004595652.1| - 1.2e-05 25.8 0.1 1.7e-05 25.2 0.1 1.2 1 0 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 gi|336252545|ref|YP_004595652.1| - 5.8e-05 22.6 0.1 0.0029 17.1 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|336252545|ref|YP_004595652.1| - 9.6e-05 22.3 0.0 0.00025 21.0 0.0 1.6 2 0 0 2 2 2 1 RsgA GTPase AAA_30 PF13604.6 gi|336252545|ref|YP_004595652.1| - 0.00071 19.3 1.2 0.0016 18.2 1.2 1.6 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|336252545|ref|YP_004595652.1| - 0.00097 18.8 0.0 0.0019 17.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain MMR_HSR1 PF01926.23 gi|336252545|ref|YP_004595652.1| - 0.0052 16.8 0.1 0.02 15.0 0.1 2.0 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_25 PF13481.6 gi|336252545|ref|YP_004595652.1| - 0.0062 16.1 0.0 0.015 14.9 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_5 PF07728.14 gi|336252545|ref|YP_004595652.1| - 0.026 14.5 0.3 0.14 12.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) IstB_IS21 PF01695.17 gi|336252545|ref|YP_004595652.1| - 0.028 14.2 0.0 0.18 11.5 0.0 2.0 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_18 PF13238.6 gi|336252545|ref|YP_004595652.1| - 0.04 14.5 0.0 0.067 13.7 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|336252545|ref|YP_004595652.1| - 0.066 13.5 0.2 0.16 12.3 0.2 1.9 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|336252545|ref|YP_004595652.1| - 0.069 13.3 0.1 0.096 12.8 0.1 1.5 1 1 0 1 1 1 0 AAA domain AAA_27 PF13514.6 gi|336252545|ref|YP_004595652.1| - 0.07 12.7 0.1 0.16 11.5 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|336252545|ref|YP_004595652.1| - 0.086 13.3 0.0 0.15 12.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 gi|336252545|ref|YP_004595652.1| - 0.096 12.9 0.5 1.5 9.1 0.5 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_13 PF13166.6 gi|336252545|ref|YP_004595652.1| - 0.15 10.7 0.0 6.3 5.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.6 gi|336252545|ref|YP_004595652.1| - 0.24 11.1 0.0 14 5.3 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain MMPL PF03176.15 gi|336252546|ref|YP_004595653.1| - 0.0018 17.3 0.5 0.003 16.6 0.5 1.4 1 0 0 1 1 1 1 MMPL family NucS PF01939.16 gi|336252547|ref|YP_004595654.1| - 4.5e-06 26.2 0.0 6.2e-06 25.7 0.0 1.2 1 0 0 1 1 1 1 Endonuclease NucS zf-C4_Topoisom PF01396.19 gi|336252547|ref|YP_004595654.1| - 0.00026 20.7 4.5 0.035 13.9 0.4 2.6 2 0 0 2 2 2 2 Topoisomerase DNA binding C4 zinc finger Auto_anti-p27 PF06677.12 gi|336252547|ref|YP_004595654.1| - 0.15 12.2 15.2 0.18 12.0 1.6 3.8 3 0 0 3 3 3 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zinc_ribbon_4 PF13717.6 gi|336252547|ref|YP_004595654.1| - 0.82 9.6 3.3 1.2 9.2 0.3 2.6 3 0 0 3 3 3 0 zinc-ribbon domain tRNA_int_endo PF01974.17 gi|336252548|ref|YP_004595655.1| - 9.8e-32 108.9 0.4 2e-26 91.9 0.1 3.7 2 1 0 2 2 2 2 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.14 gi|336252548|ref|YP_004595655.1| - 8.1e-24 83.1 0.2 7.6e-11 41.5 0.0 2.7 3 0 0 3 3 3 2 tRNA intron endonuclease, N-terminal domain tRNA_int_end_N2 PF12928.7 gi|336252548|ref|YP_004595655.1| - 0.0055 16.9 0.1 3.1 8.0 0.1 2.5 2 0 0 2 2 2 2 tRNA-splicing endonuclease subunit sen54 N-term TPR_9 PF13371.6 gi|336252548|ref|YP_004595655.1| - 0.13 12.5 1.5 0.3 11.3 0.1 2.4 3 0 0 3 3 3 0 Tetratricopeptide repeat Tubulin PF00091.25 gi|336252549|ref|YP_004595656.1| - 8e-13 49.0 0.0 1.7e-09 38.1 0.0 2.3 2 0 0 2 2 2 2 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.6 gi|336252549|ref|YP_004595656.1| - 0.0035 16.6 0.2 2.4 7.3 0.0 2.2 1 1 0 2 2 2 2 Tubulin like DUF4129 PF13559.6 gi|336252550|ref|YP_004595657.1| - 0.00014 22.1 4.1 0.00014 22.1 4.1 2.9 3 0 0 3 3 3 1 Domain of unknown function (DUF4129) DUF4198 PF10670.9 gi|336252550|ref|YP_004595657.1| - 0.00046 20.6 7.6 0.25 11.7 0.3 3.4 3 0 0 3 3 3 2 Domain of unknown function (DUF4198) CarbopepD_reg_2 PF13715.6 gi|336252550|ref|YP_004595657.1| - 0.0029 17.6 7.9 0.47 10.5 0.6 3.6 3 0 0 3 3 3 2 CarboxypepD_reg-like domain DUF58 PF01882.18 gi|336252552|ref|YP_004595659.1| - 1.8e-15 57.0 0.0 4.2e-15 55.8 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function DUF58 DUF11 PF01345.18 gi|336252552|ref|YP_004595659.1| - 1.1e-07 32.0 0.0 3.6e-07 30.4 0.0 1.9 1 0 0 1 1 1 1 Domain of unknown function DUF11 NPCBM_assoc PF10633.9 gi|336252552|ref|YP_004595659.1| - 0.017 15.3 0.4 0.048 13.9 0.1 2.0 2 0 0 2 2 2 0 NPCBM-associated, NEW3 domain of alpha-galactosidase AAA_3 PF07726.11 gi|336252554|ref|YP_004595661.1| - 1.9e-64 215.4 0.2 3e-64 214.7 0.2 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|336252554|ref|YP_004595661.1| - 2.4e-19 68.9 2.7 6e-19 67.7 2.7 1.7 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|336252554|ref|YP_004595661.1| - 2.6e-16 59.9 0.0 5.9e-16 58.7 0.0 1.6 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|336252554|ref|YP_004595661.1| - 8.5e-07 29.5 0.0 2.1e-06 28.2 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|336252554|ref|YP_004595661.1| - 2.5e-06 27.3 0.0 1.5e-05 24.8 0.0 2.0 1 1 0 1 1 1 1 Sigma-54 interaction domain RuvB_N PF05496.12 gi|336252554|ref|YP_004595661.1| - 0.0014 18.4 0.0 0.019 14.7 0.0 2.2 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain MCM PF00493.23 gi|336252554|ref|YP_004595661.1| - 0.019 14.1 0.0 0.025 13.7 0.0 1.3 1 0 0 1 1 1 0 MCM P-loop domain Mg_chelatase PF01078.21 gi|336252554|ref|YP_004595661.1| - 0.02 14.3 0.1 2.2 7.6 0.0 2.3 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_2 PF07724.14 gi|336252554|ref|YP_004595661.1| - 0.04 14.0 0.0 0.073 13.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) tRNA-synt_1b PF00579.25 gi|336252555|ref|YP_004595662.1| - 4.3e-44 151.0 0.0 2.1e-26 92.9 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (W and Y) Phage_connect_1 PF05135.13 gi|336252556|ref|YP_004595663.1| - 0.076 13.5 0.2 0.33 11.5 0.2 2.1 2 0 0 2 2 2 0 Phage gp6-like head-tail connector protein LPP20 PF02169.16 gi|336252556|ref|YP_004595663.1| - 1.6 9.1 7.3 0.62 10.4 0.6 3.0 3 0 0 3 3 3 0 LPP20 lipoprotein tRNA-synt_2d PF01409.20 gi|336252557|ref|YP_004595664.1| - 2.3e-80 269.6 0.0 2.9e-80 269.3 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) DprA_WH PF17782.1 gi|336252557|ref|YP_004595664.1| - 8.3e-05 22.6 2.4 8.3e-05 22.6 2.4 4.1 4 0 0 4 4 4 1 DprA winged helix domain HTH_24 PF13412.6 gi|336252557|ref|YP_004595664.1| - 0.0008 18.9 0.0 0.0031 17.1 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding tRNA_synthFbeta PF17759.1 gi|336252557|ref|YP_004595664.1| - 0.0033 16.9 0.1 0.15 11.5 0.0 2.5 2 0 0 2 2 2 1 Phenylalanyl tRNA synthetase beta chain CLM domain tRNA-synt_2 PF00152.20 gi|336252557|ref|YP_004595664.1| - 0.0054 15.9 0.2 0.61 9.1 0.1 2.5 2 0 0 2 2 2 1 tRNA synthetases class II (D, K and N) MarR_2 PF12802.7 gi|336252557|ref|YP_004595664.1| - 0.008 16.1 0.3 0.027 14.3 0.1 2.0 2 0 0 2 2 2 1 MarR family MarR PF01047.22 gi|336252557|ref|YP_004595664.1| - 0.0082 16.0 0.0 0.02 14.8 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|336252557|ref|YP_004595664.1| - 0.025 14.4 0.0 0.07 13.0 0.0 1.8 1 0 0 1 1 1 0 IclR helix-turn-helix domain LPD22 PF18834.1 gi|336252557|ref|YP_004595664.1| - 0.027 14.7 3.4 1.7 8.9 0.3 2.4 2 0 0 2 2 2 0 Large polyvalent protein associated domain 22 TrmB PF01978.19 gi|336252557|ref|YP_004595664.1| - 0.033 14.1 0.1 0.97 9.4 0.0 2.8 3 0 0 3 3 3 0 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|336252557|ref|YP_004595664.1| - 0.13 12.6 0.0 0.32 11.4 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator tRNA_synthFbeta PF17759.1 gi|336252558|ref|YP_004595665.1| - 4e-42 144.1 0.0 5.5e-42 143.6 0.0 1.2 1 0 0 1 1 1 1 Phenylalanyl tRNA synthetase beta chain CLM domain B5 PF03484.15 gi|336252558|ref|YP_004595665.1| - 1.4e-16 60.6 1.1 6.8e-16 58.3 0.7 2.4 2 0 0 2 2 2 1 tRNA synthetase B5 domain B3_4 PF03483.17 gi|336252558|ref|YP_004595665.1| - 3.4e-13 49.7 0.0 5.5e-13 49.0 0.0 1.3 1 0 0 1 1 1 1 B3/4 domain PhetRS_B1 PF18262.1 gi|336252558|ref|YP_004595665.1| - 2.1e-06 27.8 2.2 0.0011 19.1 0.1 3.6 3 1 0 3 3 3 2 Phe-tRNA synthetase beta subunit B1 domain tRNA-synt_2d PF01409.20 gi|336252558|ref|YP_004595665.1| - 3.4e-06 26.7 0.0 5.4e-06 26.1 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) SymE_toxin PF08845.10 gi|336252559|ref|YP_004595666.1| - 0.0012 18.9 0.0 0.0012 18.8 0.0 1.1 1 0 0 1 1 1 1 Toxin SymE, type I toxin-antitoxin system MazE_antitoxin PF04014.18 gi|336252559|ref|YP_004595666.1| - 0.013 15.4 0.4 0.02 14.8 0.4 1.3 1 0 0 1 1 1 0 Antidote-toxin recognition MazE, bacterial antitoxin MC1 PF05854.11 gi|336252560|ref|YP_004595667.1| - 4.7e-48 161.4 0.3 5.6e-48 161.2 0.3 1.0 1 0 0 1 1 1 1 Non-histone chromosomal protein MC1 MFS_1 PF07690.16 gi|336252562|ref|YP_004595669.1| - 8.3e-32 110.5 41.0 8.3e-32 110.5 41.0 1.4 2 0 0 2 2 2 1 Major Facilitator Superfamily Bac_rhodopsin PF01036.18 gi|336252563|ref|YP_004595670.1| - 1.8e-25 89.9 23.9 2.1e-25 89.6 23.9 1.0 1 0 0 1 1 1 1 Bacteriorhodopsin-like protein GRA6 PF05084.13 gi|336252563|ref|YP_004595670.1| - 0.46 10.4 2.2 1.1 9.1 0.1 2.1 2 0 0 2 2 2 0 Granule antigen protein (GRA6) Cytochrom_B_C PF00032.17 gi|336252563|ref|YP_004595670.1| - 0.99 9.7 6.3 0.82 10.0 0.9 2.6 1 1 1 2 2 2 0 Cytochrome b(C-terminal)/b6/petD PetG PF02529.15 gi|336252563|ref|YP_004595670.1| - 1.8 8.5 9.7 0.5 10.3 2.4 3.0 2 0 0 2 2 2 0 Cytochrome B6-F complex subunit 5 MCPsignal PF00015.21 gi|336252564|ref|YP_004595671.1| - 1.2e-37 129.4 25.6 1.2e-37 129.4 25.6 5.0 1 1 4 5 5 5 3 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 gi|336252564|ref|YP_004595671.1| - 3e-16 59.5 13.4 3.4e-09 36.9 0.2 5.7 4 1 0 4 4 4 2 HAMP domain DUF1664 PF07889.12 gi|336252564|ref|YP_004595671.1| - 3.9e-06 26.9 35.9 0.0073 16.3 1.1 5.5 1 1 3 5 5 5 2 Protein of unknown function (DUF1664) DUF3450 PF11932.8 gi|336252564|ref|YP_004595671.1| - 0.00016 21.0 48.9 0.039 13.2 0.8 5.0 1 1 4 5 5 5 3 Protein of unknown function (DUF3450) GAS PF13851.6 gi|336252564|ref|YP_004595671.1| - 0.0023 17.3 21.4 0.26 10.6 0.3 3.4 3 0 0 3 3 3 3 Growth-arrest specific micro-tubule binding DUF948 PF06103.11 gi|336252564|ref|YP_004595671.1| - 0.0037 17.5 47.0 0.083 13.2 3.0 7.4 1 1 7 8 8 8 5 Bacterial protein of unknown function (DUF948) TMF_TATA_bd PF12325.8 gi|336252564|ref|YP_004595671.1| - 0.0055 16.9 35.6 0.034 14.4 0.8 5.0 3 2 1 4 4 4 1 TATA element modulatory factor 1 TATA binding BLOC1_2 PF10046.9 gi|336252564|ref|YP_004595671.1| - 0.0056 16.9 28.4 0.4 11.0 1.9 6.2 3 2 1 5 5 5 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 Laminin_II PF06009.12 gi|336252564|ref|YP_004595671.1| - 0.0061 16.6 45.7 0.38 10.8 1.5 5.2 2 2 3 6 6 6 4 Laminin Domain II RPW8 PF05659.11 gi|336252564|ref|YP_004595671.1| - 0.0092 15.7 11.6 1.3 8.7 0.1 5.0 4 1 1 5 5 5 1 Arabidopsis broad-spectrum mildew resistance protein RPW8 Spc7 PF08317.11 gi|336252564|ref|YP_004595671.1| - 0.0093 14.9 45.0 0.6 8.9 9.3 3.5 1 1 2 3 3 3 2 Spc7 kinetochore protein I_LWEQ PF01608.17 gi|336252564|ref|YP_004595671.1| - 0.01 16.1 3.2 0.01 16.1 3.2 4.6 1 1 2 4 4 4 0 I/LWEQ domain ATG16 PF08614.11 gi|336252564|ref|YP_004595671.1| - 0.011 15.9 3.5 0.011 15.9 3.5 4.2 1 1 3 4 4 4 0 Autophagy protein 16 (ATG16) RmuC PF02646.16 gi|336252564|ref|YP_004595671.1| - 0.013 14.6 27.9 1.6 7.8 0.6 5.7 2 1 5 7 7 7 0 RmuC family DUF4201 PF13870.6 gi|336252564|ref|YP_004595671.1| - 0.017 14.9 9.5 0.028 14.1 3.4 3.2 3 1 0 3 3 3 0 Domain of unknown function (DUF4201) Fib_alpha PF08702.10 gi|336252564|ref|YP_004595671.1| - 0.024 14.8 22.6 0.54 10.4 2.1 4.7 3 2 2 5 5 5 0 Fibrinogen alpha/beta chain family CENP-Q PF13094.6 gi|336252564|ref|YP_004595671.1| - 0.053 13.7 30.7 0.046 13.9 10.5 3.2 2 1 1 3 3 3 0 CENP-Q, a CENPA-CAD centromere complex subunit DUF2203 PF09969.9 gi|336252564|ref|YP_004595671.1| - 0.12 13.1 36.5 1.4 9.7 0.8 5.3 1 1 4 6 6 6 0 Uncharacterized conserved protein (DUF2203) Sec34 PF04136.15 gi|336252564|ref|YP_004595671.1| - 0.12 12.2 25.5 2 8.3 2.3 5.6 3 2 3 6 6 6 0 Sec34-like family Rota_NSP4 PF01452.16 gi|336252564|ref|YP_004595671.1| - 0.14 11.8 3.1 4.1 7.0 0.2 2.6 2 0 0 2 2 2 0 Rotavirus non structural protein DCB PF16213.5 gi|336252564|ref|YP_004595671.1| - 0.16 11.6 0.1 0.16 11.6 0.1 3.4 4 1 0 4 4 4 0 Dimerisation and cyclophilin-binding domain of Mon2 Hormone_1 PF00103.20 gi|336252564|ref|YP_004595671.1| - 0.18 11.5 11.6 2.3 7.9 0.3 4.5 2 2 4 6 6 6 0 Somatotropin hormone family EzrA PF06160.12 gi|336252564|ref|YP_004595671.1| - 0.22 9.7 32.4 0.16 10.1 1.2 2.8 1 1 0 2 2 2 0 Septation ring formation regulator, EzrA MscS_porin PF12795.7 gi|336252564|ref|YP_004595671.1| - 0.27 10.7 43.3 0.41 10.2 11.5 3.4 3 0 0 3 3 3 0 Mechanosensitive ion channel porin domain Syntaxin_2 PF14523.6 gi|336252564|ref|YP_004595671.1| - 0.34 11.3 19.0 0.55 10.6 0.4 5.2 3 2 2 5 5 5 0 Syntaxin-like protein DUF5082 PF16888.5 gi|336252564|ref|YP_004595671.1| - 0.41 10.9 28.1 0.19 12.0 2.5 4.2 3 1 1 4 4 4 0 Domain of unknown function (DUF5082) TPR_MLP1_2 PF07926.12 gi|336252564|ref|YP_004595671.1| - 0.73 9.9 46.7 0.021 14.9 8.7 4.4 3 2 1 4 4 4 0 TPR/MLP1/MLP2-like protein DASH_Duo1 PF08651.10 gi|336252564|ref|YP_004595671.1| - 1.1 9.0 17.9 2.1 8.2 0.2 6.5 5 2 2 7 7 7 0 DASH complex subunit Duo1 AAA_13 PF13166.6 gi|336252564|ref|YP_004595671.1| - 1.1 7.8 37.5 54 2.2 23.4 2.9 1 1 1 2 2 2 0 AAA domain BST2 PF16716.5 gi|336252564|ref|YP_004595671.1| - 1.2 9.8 26.7 0.56 10.8 0.1 5.0 3 2 2 5 5 4 0 Bone marrow stromal antigen 2 COG6 PF06419.11 gi|336252564|ref|YP_004595671.1| - 1.5 6.9 23.7 0.17 10.0 2.7 4.1 2 1 1 4 4 4 0 Conserved oligomeric complex COG6 ERM PF00769.19 gi|336252564|ref|YP_004595671.1| - 1.7 8.4 56.5 0.044 13.6 21.3 3.6 2 1 0 3 3 3 0 Ezrin/radixin/moesin family Fez1 PF06818.15 gi|336252564|ref|YP_004595671.1| - 1.7 9.0 36.6 0.55 10.6 1.1 3.2 2 1 1 3 3 3 0 Fez1 LMBR1 PF04791.16 gi|336252564|ref|YP_004595671.1| - 1.8 7.4 16.1 92 1.7 16.1 2.8 1 1 0 1 1 1 0 LMBR1-like membrane protein Atg14 PF10186.9 gi|336252564|ref|YP_004595671.1| - 2 7.5 17.8 1.1 8.3 2.8 3.6 3 1 0 3 3 3 0 Vacuolar sorting 38 and autophagy-related subunit 14 CorA PF01544.18 gi|336252564|ref|YP_004595671.1| - 2.3 7.5 30.8 0.28 10.5 1.7 3.6 2 1 0 3 3 3 0 CorA-like Mg2+ transporter protein Vip3A_N PF12495.8 gi|336252564|ref|YP_004595671.1| - 2.7 7.9 6.7 23 4.8 0.3 3.5 2 1 2 4 4 4 0 Vegetative insecticide protein 3A N terminal SLX9 PF15341.6 gi|336252564|ref|YP_004595671.1| - 2.8 8.3 18.3 1.5 9.2 13.9 2.7 2 1 0 2 2 2 0 Ribosome biogenesis protein SLX9 Jnk-SapK_ap_N PF09744.9 gi|336252564|ref|YP_004595671.1| - 2.8 8.1 37.4 2.6 8.2 15.9 4.0 2 1 1 3 3 3 0 JNK_SAPK-associated protein-1 Seryl_tRNA_N PF02403.22 gi|336252564|ref|YP_004595671.1| - 3.5 7.9 32.5 9.8 6.5 2.8 5.5 2 1 4 6 6 6 0 Seryl-tRNA synthetase N-terminal domain Mod_r PF07200.13 gi|336252564|ref|YP_004595671.1| - 3.7 7.7 34.8 1.2 9.2 9.9 4.0 1 1 3 4 4 4 0 Modifier of rudimentary (Mod(r)) protein TBCA PF02970.16 gi|336252564|ref|YP_004595671.1| - 4.1 7.8 30.5 0.047 14.0 7.8 4.5 4 1 1 5 5 4 0 Tubulin binding cofactor A DUF3584 PF12128.8 gi|336252564|ref|YP_004595671.1| - 4.2 4.8 48.4 0.36 8.3 26.3 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3584) Spectrin PF00435.21 gi|336252564|ref|YP_004595671.1| - 4.5 7.8 30.2 5.8 7.5 1.1 4.8 3 2 1 4 4 4 0 Spectrin repeat CENP-H PF05837.12 gi|336252564|ref|YP_004595671.1| - 5.2 7.5 37.9 2.7 8.4 1.4 5.0 3 2 2 5 5 5 0 Centromere protein H (CENP-H) Sec8_exocyst PF04048.14 gi|336252564|ref|YP_004595671.1| - 6.3 6.7 18.0 9.5 6.1 0.1 4.8 3 2 1 5 5 4 0 Sec8 exocyst complex component specific domain Tweety PF04906.13 gi|336252564|ref|YP_004595671.1| - 6.4 5.3 11.7 3.2 6.3 0.7 3.3 2 1 0 3 3 3 0 Tweety APG6_N PF17675.1 gi|336252564|ref|YP_004595671.1| - 6.6 7.3 54.4 1.5 9.4 19.1 4.7 2 2 1 4 4 4 0 Apg6 coiled-coil region Occludin_ELL PF07303.13 gi|336252564|ref|YP_004595671.1| - 6.9 7.5 9.5 27 5.5 1.7 4.6 3 2 1 4 4 3 0 Occludin homology domain TMPIT PF07851.13 gi|336252564|ref|YP_004595671.1| - 7.4 5.7 22.7 5.7 6.1 0.4 4.0 1 1 2 4 4 4 0 TMPIT-like protein YabA PF06156.13 gi|336252564|ref|YP_004595671.1| - 7.6 7.2 21.7 30 5.3 4.3 5.2 2 2 2 4 4 4 0 Initiation control protein YabA ADIP PF11559.8 gi|336252564|ref|YP_004595671.1| - 8.6 6.4 31.7 1.3 9.1 10.7 4.1 3 1 1 4 4 4 0 Afadin- and alpha -actinin-Binding NPV_P10 PF05531.12 gi|336252564|ref|YP_004595671.1| - 9.7 6.7 40.1 8.4 6.9 0.1 7.3 2 2 3 6 6 6 0 Nucleopolyhedrovirus P10 protein HATPase_c PF02518.26 gi|336252565|ref|YP_004595672.1| - 3.4e-16 59.7 0.0 6.4e-16 58.9 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|336252565|ref|YP_004595672.1| - 2.8e-13 49.7 3.4 3.8e-13 49.3 2.0 2.0 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain GAF_2 PF13185.6 gi|336252565|ref|YP_004595672.1| - 1.2e-06 28.9 1.6 2.9e-05 24.4 0.0 3.1 3 1 0 3 3 3 1 GAF domain GAF_3 PF13492.6 gi|336252565|ref|YP_004595672.1| - 1.3e-06 28.7 0.0 0.00041 20.7 0.0 2.7 2 0 0 2 2 2 1 GAF domain GAF PF01590.26 gi|336252565|ref|YP_004595672.1| - 2.5e-06 28.1 0.0 1.4e-05 25.7 0.0 2.2 1 1 0 1 1 1 1 GAF domain HATPase_c_3 PF13589.6 gi|336252565|ref|YP_004595672.1| - 0.063 13.1 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA_4TM PF16926.5 gi|336252565|ref|YP_004595672.1| - 0.17 11.4 0.4 0.39 10.3 0.0 1.8 2 0 0 2 2 2 0 Archaeal 4TM region of histidine kinase PDT PF00800.18 gi|336252566|ref|YP_004595673.1| - 1e-46 159.0 0.0 1.3e-46 158.7 0.0 1.1 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.25 gi|336252566|ref|YP_004595673.1| - 5.3e-06 26.1 0.0 1.7e-05 24.5 0.0 1.9 1 1 0 1 1 1 1 ACT domain CBS PF00571.28 gi|336252567|ref|YP_004595674.1| - 4.1e-24 84.8 3.4 1.5e-11 44.6 0.4 2.1 2 0 0 2 2 2 2 CBS domain AhpC-TSA PF00578.21 gi|336252568|ref|YP_004595675.1| - 2.9e-29 101.5 0.0 3.5e-29 101.3 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|336252568|ref|YP_004595675.1| - 5e-18 65.2 0.0 5.6e-18 65.1 0.0 1.0 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.6 gi|336252568|ref|YP_004595675.1| - 8.1e-06 25.9 0.0 1.4e-05 25.2 0.0 1.3 1 1 0 1 1 1 1 AhpC/TSA antioxidant enzyme DUF899 PF05988.12 gi|336252568|ref|YP_004595675.1| - 0.0083 15.7 0.0 0.01 15.4 0.0 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF899) HSP20 PF00011.21 gi|336252569|ref|YP_004595676.1| - 2.1e-18 66.4 0.0 2.6e-18 66.0 0.0 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|336252569|ref|YP_004595676.1| - 2.7e-13 49.3 0.0 4.4e-13 48.6 0.0 1.4 1 0 0 1 1 1 1 HSP20-like domain found in ArsA GvpH PF05455.11 gi|336252569|ref|YP_004595676.1| - 0.0031 17.6 0.8 0.0043 17.1 0.8 1.3 1 0 0 1 1 1 1 GvpH CS PF04969.16 gi|336252569|ref|YP_004595676.1| - 0.16 13.0 0.0 0.21 12.6 0.0 1.2 1 0 0 1 1 1 0 CS domain PIH1_CS PF18201.1 gi|336252569|ref|YP_004595676.1| - 0.19 12.2 0.0 0.36 11.3 0.0 1.4 1 1 0 1 1 1 0 PIH1 CS-like domain LapA_dom PF06305.11 gi|336252570|ref|YP_004595677.1| - 0.26 11.1 0.1 0.26 11.1 0.1 2.4 2 0 0 2 2 2 0 Lipopolysaccharide assembly protein A domain tRNA-synt_1 PF00133.22 gi|336252571|ref|YP_004595678.1| - 1.3e-72 244.9 3.5 3.5e-26 91.6 0.6 4.9 2 2 2 4 4 4 4 tRNA synthetases class I (I, L, M and V) tRNA-synt_1_2 PF13603.6 gi|336252571|ref|YP_004595678.1| - 9.5e-55 185.0 0.0 2e-54 183.9 0.0 1.5 2 0 0 2 2 2 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1g PF09334.11 gi|336252571|ref|YP_004595678.1| - 7.5e-40 136.9 1.4 1.9e-22 79.6 0.0 4.6 4 1 1 5 5 5 4 tRNA synthetases class I (M) Anticodon_1 PF08264.13 gi|336252571|ref|YP_004595678.1| - 4.8e-18 65.6 0.0 8.6e-18 64.7 0.0 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.19 gi|336252571|ref|YP_004595678.1| - 5.1e-09 35.9 0.1 1.9e-06 27.5 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|336252571|ref|YP_004595678.1| - 1.1e-05 24.6 0.0 0.0015 17.6 0.0 2.7 2 1 0 2 2 2 1 tRNA synthetases class I (K) DZR PF12773.7 gi|336252571|ref|YP_004595678.1| - 0.0012 18.8 4.2 0.38 10.8 0.3 2.6 2 1 0 2 2 2 2 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|336252571|ref|YP_004595678.1| - 0.0089 15.4 5.9 2 8.0 0.1 4.0 4 0 0 4 4 4 2 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|336252571|ref|YP_004595678.1| - 0.11 12.6 7.9 3.4 7.9 4.8 3.3 2 1 0 2 2 2 0 Zinc ribbon domain Phage-MuB_C PF09077.11 gi|336252571|ref|YP_004595678.1| - 0.17 11.8 0.2 0.44 10.5 0.1 1.7 2 0 0 2 2 1 0 Mu B transposition protein, C terminal tRNA-synt_1b PF00579.25 gi|336252571|ref|YP_004595678.1| - 0.18 11.1 0.1 0.53 9.6 0.0 1.8 2 0 0 2 2 2 0 tRNA synthetases class I (W and Y) DNA_ligase_ZBD PF03119.16 gi|336252571|ref|YP_004595678.1| - 0.5 10.4 7.1 0.91 9.6 0.0 3.6 3 1 1 4 4 4 0 NAD-dependent DNA ligase C4 zinc finger domain TF_Zn_Ribbon PF08271.12 gi|336252571|ref|YP_004595678.1| - 5 6.7 11.5 4.7 6.8 0.4 3.6 3 0 0 3 3 3 0 TFIIB zinc-binding Na_Ca_ex PF01699.24 gi|336252572|ref|YP_004595679.1| - 6.3e-20 71.7 49.1 8e-18 64.8 14.5 2.4 3 0 0 3 3 3 2 Sodium/calcium exchanger protein GST_N_3 PF13417.6 gi|336252573|ref|YP_004595680.1| - 3.2e-12 46.7 0.0 4.8e-12 46.1 0.0 1.3 1 1 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_2 PF13409.6 gi|336252573|ref|YP_004595680.1| - 7.2e-05 23.0 0.0 0.00012 22.3 0.0 1.4 1 1 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Glutaredoxin PF00462.24 gi|336252573|ref|YP_004595680.1| - 0.00039 20.6 0.0 0.00076 19.6 0.0 1.4 1 0 0 1 1 1 1 Glutaredoxin CCG PF02754.16 gi|336252574|ref|YP_004595681.1| - 3.2e-16 59.3 0.0 6.2e-12 45.6 0.2 2.5 2 0 0 2 2 2 2 Cysteine-rich domain Fer4 PF00037.27 gi|336252574|ref|YP_004595681.1| - 7.9e-10 38.1 12.4 1.9e-05 24.3 1.3 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|336252574|ref|YP_004595681.1| - 1e-09 38.3 10.2 5.8e-08 32.7 10.6 2.9 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|336252574|ref|YP_004595681.1| - 4.5e-09 36.6 5.6 4.5e-09 36.6 5.6 1.9 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|336252574|ref|YP_004595681.1| - 1.6e-08 34.6 8.7 1.9e-08 34.4 6.5 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|336252574|ref|YP_004595681.1| - 6.5e-08 33.0 9.0 6.5e-08 33.0 9.0 2.0 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|336252574|ref|YP_004595681.1| - 1e-07 31.6 11.6 0.00019 21.3 1.7 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|336252574|ref|YP_004595681.1| - 5.4e-05 23.2 10.9 0.012 15.7 0.4 2.9 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|336252574|ref|YP_004595681.1| - 0.00025 21.0 23.2 0.00039 20.4 4.3 2.9 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|336252574|ref|YP_004595681.1| - 0.00028 21.7 13.3 0.0007 20.5 11.5 2.4 2 1 1 3 3 2 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|336252574|ref|YP_004595681.1| - 0.00041 20.8 13.7 0.00045 20.7 10.9 2.5 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|336252574|ref|YP_004595681.1| - 0.0005 20.9 4.3 0.049 14.5 0.2 2.9 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|336252574|ref|YP_004595681.1| - 0.00078 19.8 18.1 0.004 17.5 0.8 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain Acid_PPase PF12689.7 gi|336252574|ref|YP_004595681.1| - 0.052 13.4 0.0 0.092 12.6 0.0 1.3 1 0 0 1 1 1 0 Acid Phosphatase Fer4_18 PF13746.6 gi|336252574|ref|YP_004595681.1| - 0.17 12.1 11.2 0.73 10.0 1.2 2.8 2 1 1 3 3 3 0 4Fe-4S dicluster domain CopD PF05425.13 gi|336252574|ref|YP_004595681.1| - 0.41 11.0 3.1 1.7 9.1 0.8 2.4 2 0 0 2 2 2 0 Copper resistance protein D Fer4_15 PF13459.6 gi|336252574|ref|YP_004595681.1| - 0.47 11.2 10.3 0.52 11.1 0.4 3.2 2 1 0 2 2 2 0 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|336252574|ref|YP_004595681.1| - 0.5 10.9 17.5 0.45 11.1 1.5 3.2 3 0 0 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|336252574|ref|YP_004595681.1| - 2.8 9.1 25.5 0.69 11.0 5.3 2.9 3 0 0 3 3 2 0 4Fe-4S binding domain DUF1451 PF07295.11 gi|336252575|ref|YP_004595682.1| - 0.028 14.4 1.2 0.028 14.4 1.2 2.3 2 0 0 2 2 2 0 Zinc-ribbon containing domain HTH_Tnp_1 PF01527.20 gi|336252575|ref|YP_004595682.1| - 0.03 14.7 0.3 0.1 12.9 0.1 2.0 2 0 0 2 2 2 0 Transposase HTH_23 PF13384.6 gi|336252575|ref|YP_004595682.1| - 0.073 12.9 0.1 4 7.4 0.0 2.5 2 0 0 2 2 2 0 Homeodomain-like domain ApoO PF09769.9 gi|336252575|ref|YP_004595682.1| - 0.29 11.1 1.1 1.2 9.1 0.1 2.1 2 0 0 2 2 2 0 Apolipoprotein O UPF0193 PF05250.11 gi|336252575|ref|YP_004595682.1| - 0.42 10.4 6.1 0.057 13.2 2.1 1.5 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0193) zf-C4H2 PF10146.9 gi|336252575|ref|YP_004595682.1| - 2.7 8.2 7.5 2.4 8.4 5.8 1.8 1 1 0 1 1 1 0 Zinc finger-containing protein PDDEXK_1 PF12705.7 gi|336252576|ref|YP_004595683.1| - 5.4e-05 23.2 2.8 0.049 13.5 0.3 2.3 1 1 0 2 2 2 2 PD-(D/E)XK nuclease superfamily Cas_Cas4 PF01930.17 gi|336252576|ref|YP_004595683.1| - 0.0015 18.7 0.0 0.005 17.0 0.0 1.8 2 0 0 2 2 2 1 Domain of unknown function DUF83 Exo5 PF09810.9 gi|336252576|ref|YP_004595683.1| - 0.27 10.7 0.1 2.2 7.7 0.2 2.0 2 0 0 2 2 2 0 Exonuclease V - a 5' deoxyribonuclease Abhydrolase_1 PF00561.20 gi|336252577|ref|YP_004595684.1| - 2e-27 96.5 0.0 2.6e-27 96.1 0.0 1.1 1 0 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|336252577|ref|YP_004595684.1| - 0.01 15.1 0.0 0.018 14.3 0.0 1.3 1 0 0 1 1 1 0 Serine aminopeptidase, S33 Peptidase_S9 PF00326.21 gi|336252577|ref|YP_004595684.1| - 0.088 12.3 0.2 5.5 6.4 0.1 2.5 3 0 0 3 3 3 0 Prolyl oligopeptidase family Cys_Met_Meta_PP PF01053.20 gi|336252578|ref|YP_004595685.1| - 3.7e-137 456.9 0.0 4.2e-137 456.7 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|336252578|ref|YP_004595685.1| - 4.5e-08 32.8 0.8 6.6e-08 32.2 0.4 1.4 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.21 gi|336252578|ref|YP_004595685.1| - 4.7e-08 32.6 0.0 8e-08 31.8 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|336252578|ref|YP_004595685.1| - 7.6e-05 21.8 0.0 0.00013 21.1 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|336252578|ref|YP_004595685.1| - 0.00031 20.1 0.0 0.00055 19.3 0.0 1.5 1 1 0 1 1 1 1 Beta-eliminating lyase Sugarporin_N PF11471.8 gi|336252578|ref|YP_004595685.1| - 0.061 13.3 0.3 0.31 11.0 0.0 2.2 2 0 0 2 2 2 0 Maltoporin periplasmic N-terminal extension IGPD PF00475.18 gi|336252580|ref|YP_004595687.1| - 2.1e-60 203.2 1.2 3.2e-60 202.6 1.2 1.3 1 0 0 1 1 1 1 Imidazoleglycerol-phosphate dehydratase ClpS PF02617.17 gi|336252580|ref|YP_004595687.1| - 0.095 12.5 0.7 2.3 8.0 0.1 2.4 2 0 0 2 2 2 0 ATP-dependent Clp protease adaptor protein ClpS Lar_restr_allev PF14354.6 gi|336252581|ref|YP_004595688.1| - 0.025 14.9 0.0 0.053 13.9 0.0 1.6 1 0 0 1 1 1 0 Restriction alleviation protein Lar SPX PF03105.19 gi|336252581|ref|YP_004595688.1| - 2.4 8.0 8.8 3.1 7.6 8.8 1.2 1 0 0 1 1 1 0 SPX domain ACT PF01842.25 gi|336252582|ref|YP_004595689.1| - 0.00038 20.2 0.6 0.0011 18.7 0.1 2.1 2 1 0 2 2 2 1 ACT domain ACT_7 PF13840.6 gi|336252582|ref|YP_004595689.1| - 0.00057 19.6 0.1 0.0017 18.1 0.0 1.8 2 0 0 2 2 2 1 ACT domain UPF0029 PF01205.19 gi|336252584|ref|YP_004595691.1| - 3.1e-30 104.6 0.0 4e-30 104.3 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein family UPF0029 DUF1949 PF09186.11 gi|336252584|ref|YP_004595691.1| - 9.2e-13 47.9 1.2 1.1e-12 47.6 0.1 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF1949) EFG_C PF00679.24 gi|336252584|ref|YP_004595691.1| - 0.0021 18.1 0.0 0.0038 17.2 0.0 1.4 1 0 0 1 1 1 1 Elongation factor G C-terminus bPH_6 PF10756.9 gi|336252585|ref|YP_004595692.1| - 0.0085 16.2 0.2 0.0085 16.2 0.2 2.2 3 0 0 3 3 3 1 Bacterial PH domain DctM PF06808.12 gi|336252586|ref|YP_004595693.1| - 4.4e-78 262.9 51.4 2.8e-54 184.5 26.6 2.6 2 0 0 2 2 2 2 Tripartite ATP-independent periplasmic transporter, DctM component DUF1850 PF08905.11 gi|336252587|ref|YP_004595694.1| - 2.4e-23 82.3 0.0 3.6e-23 81.7 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1850) VirB8 PF04335.13 gi|336252587|ref|YP_004595694.1| - 0.16 11.8 0.7 0.23 11.2 0.7 1.2 1 0 0 1 1 1 0 VirB8 protein NMT1_3 PF16868.5 gi|336252588|ref|YP_004595695.1| - 2.1e-71 240.7 1.2 2.6e-71 240.4 1.2 1.0 1 0 0 1 1 1 1 NMT1-like family NMT1 PF09084.11 gi|336252588|ref|YP_004595695.1| - 3.8e-09 36.8 1.6 5.9e-08 32.9 0.1 2.2 2 0 0 2 2 2 1 NMT1/THI5 like Phosphonate-bd PF12974.7 gi|336252588|ref|YP_004595695.1| - 1.4e-08 34.6 2.8 2.6e-08 33.8 2.8 1.5 1 1 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein TAT_signal PF10518.9 gi|336252588|ref|YP_004595695.1| - 0.018 14.9 0.3 0.038 13.8 0.3 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Peptidase_S9 PF00326.21 gi|336252589|ref|YP_004595696.1| - 6.4e-57 192.5 0.2 9e-57 192.0 0.2 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family PD40 PF07676.12 gi|336252589|ref|YP_004595696.1| - 3.5e-18 65.0 7.3 3.4e-08 33.2 0.1 5.2 5 0 0 5 5 5 3 WD40-like Beta Propeller Repeat Abhydrolase_1 PF00561.20 gi|336252589|ref|YP_004595696.1| - 9.3e-08 32.0 0.1 1.7e-06 27.9 0.2 2.1 1 1 0 2 2 2 1 alpha/beta hydrolase fold DLH PF01738.18 gi|336252589|ref|YP_004595696.1| - 3.8e-07 29.9 0.0 6.7e-07 29.1 0.0 1.3 1 0 0 1 1 1 1 Dienelactone hydrolase family AXE1 PF05448.12 gi|336252589|ref|YP_004595696.1| - 4e-07 29.0 0.4 0.0045 15.7 0.0 2.2 1 1 1 2 2 2 2 Acetyl xylan esterase (AXE1) Hydrolase_4 PF12146.8 gi|336252589|ref|YP_004595696.1| - 1.8e-05 24.2 0.9 0.032 13.5 0.3 2.2 2 0 0 2 2 2 2 Serine aminopeptidase, S33 DPPIV_N PF00930.21 gi|336252589|ref|YP_004595696.1| - 0.002 16.9 0.0 0.41 9.4 0.0 3.5 2 1 2 4 4 4 1 Dipeptidyl peptidase IV (DPP IV) N-terminal region Abhydrolase_4 PF08386.10 gi|336252589|ref|YP_004595696.1| - 0.11 12.7 0.0 0.36 11.0 0.0 1.8 2 0 0 2 2 2 0 TAP-like protein Peptidase_S28 PF05577.12 gi|336252589|ref|YP_004595696.1| - 0.26 10.0 0.0 0.39 9.5 0.0 1.1 1 0 0 1 1 1 0 Serine carboxypeptidase S28 BAAT_C PF08840.11 gi|336252589|ref|YP_004595696.1| - 0.27 11.1 0.0 6.6 6.6 0.0 2.1 1 1 0 1 1 1 0 BAAT / Acyl-CoA thioester hydrolase C terminal DUF2892 PF11127.8 gi|336252590|ref|YP_004595697.1| - 7.9e-15 54.6 0.4 8.5e-15 54.6 0.4 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF2892) UxuA PF03786.13 gi|336252591|ref|YP_004595698.1| - 4.8e-77 259.2 0.3 1e-59 202.2 0.1 2.0 1 1 1 2 2 2 2 D-mannonate dehydratase (UxuA) AP_endonuc_2 PF01261.24 gi|336252591|ref|YP_004595698.1| - 2.8e-21 76.0 0.2 3.6e-21 75.6 0.2 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Cupin_2 PF07883.11 gi|336252592|ref|YP_004595699.1| - 3.8e-11 42.5 0.1 6.3e-11 41.8 0.1 1.4 1 0 0 1 1 1 1 Cupin domain MannoseP_isomer PF01050.18 gi|336252592|ref|YP_004595699.1| - 0.00017 21.5 0.0 0.0002 21.3 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase KduI PF04962.12 gi|336252592|ref|YP_004595699.1| - 0.0032 16.8 0.0 0.0038 16.6 0.0 1.1 1 0 0 1 1 1 1 KduI/IolB family Cupin_7 PF12973.7 gi|336252592|ref|YP_004595699.1| - 0.0043 16.9 0.0 0.0056 16.6 0.0 1.1 1 0 0 1 1 1 1 ChrR Cupin-like domain AraC_binding PF02311.19 gi|336252592|ref|YP_004595699.1| - 0.0096 15.8 0.0 0.013 15.4 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain DMSP_lyase PF16867.5 gi|336252592|ref|YP_004595699.1| - 0.045 13.4 0.0 0.064 12.9 0.0 1.1 1 0 0 1 1 1 0 Dimethlysulfonioproprionate lyase Cupin_1 PF00190.22 gi|336252592|ref|YP_004595699.1| - 0.061 12.9 0.0 0.11 12.1 0.0 1.3 1 1 0 1 1 1 0 Cupin Ppnp PF06865.11 gi|336252592|ref|YP_004595699.1| - 0.24 11.9 0.0 0.39 11.2 0.0 1.4 1 0 0 1 1 1 0 Pyrimidine/purine nucleoside phosphorylase UPRTase PF14681.6 gi|336252593|ref|YP_004595700.1| - 7.7e-48 162.7 0.0 9.1e-48 162.4 0.0 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.27 gi|336252593|ref|YP_004595700.1| - 7e-10 38.6 0.1 9.5e-10 38.2 0.1 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain Tape_meas_lam_C PF09718.10 gi|336252595|ref|YP_004595702.1| - 0.032 14.4 0.3 0.083 13.0 0.3 1.6 1 0 0 1 1 1 0 Lambda phage tail tape-measure protein (Tape_meas_lam_C) CDC45 PF02724.14 gi|336252595|ref|YP_004595702.1| - 3.7 5.7 10.0 5.6 5.1 10.0 1.2 1 0 0 1 1 1 0 CDC45-like protein BPD_transp_1 PF00528.22 gi|336252596|ref|YP_004595703.1| - 2.3e-17 63.3 7.7 2.3e-17 63.3 7.7 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|336252597|ref|YP_004595704.1| - 7.6e-33 113.9 0.0 1e-32 113.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|336252597|ref|YP_004595704.1| - 2.4e-12 47.3 0.0 4.7e-05 23.4 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|336252597|ref|YP_004595704.1| - 7.9e-07 28.7 0.0 2.9e-06 26.9 0.0 1.7 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|336252597|ref|YP_004595704.1| - 6.1e-05 22.7 0.0 0.00013 21.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|336252597|ref|YP_004595704.1| - 0.00058 19.7 0.0 0.01 15.6 0.0 2.0 1 1 1 2 2 2 1 AAA ATPase domain AAA_16 PF13191.6 gi|336252597|ref|YP_004595704.1| - 0.00079 19.9 0.1 0.0015 18.9 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|336252597|ref|YP_004595704.1| - 0.00088 19.8 0.0 0.0011 19.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|336252597|ref|YP_004595704.1| - 0.0021 18.0 0.0 0.0043 17.0 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_22 PF13401.6 gi|336252597|ref|YP_004595704.1| - 0.0027 18.0 0.0 0.0043 17.3 0.0 1.6 1 1 0 1 1 1 1 AAA domain ABC_ATPase PF09818.9 gi|336252597|ref|YP_004595704.1| - 0.0059 15.5 0.0 1.6 7.4 0.0 2.3 2 1 0 2 2 2 2 Predicted ATPase of the ABC class AAA_30 PF13604.6 gi|336252597|ref|YP_004595704.1| - 0.012 15.4 0.0 0.019 14.7 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|336252597|ref|YP_004595704.1| - 0.013 15.1 0.2 0.048 13.2 0.2 2.0 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|336252597|ref|YP_004595704.1| - 0.016 14.6 0.0 0.26 10.6 0.0 2.1 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_33 PF13671.6 gi|336252597|ref|YP_004595704.1| - 0.024 14.8 0.1 0.042 14.0 0.1 1.6 1 1 0 1 1 1 0 AAA domain Adeno_IVa2 PF02456.15 gi|336252597|ref|YP_004595704.1| - 0.052 12.3 0.1 0.34 9.6 0.0 1.9 2 0 0 2 2 2 0 Adenovirus IVa2 protein AAA_24 PF13479.6 gi|336252597|ref|YP_004595704.1| - 0.079 12.7 0.0 0.55 9.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.14 gi|336252597|ref|YP_004595704.1| - 0.12 12.4 0.0 0.4 10.7 0.0 1.8 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) BPD_transp_1 PF00528.22 gi|336252598|ref|YP_004595705.1| - 3.1e-16 59.7 10.1 3.1e-16 59.7 10.1 1.5 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component DUF1232 PF06803.12 gi|336252598|ref|YP_004595705.1| - 1 9.2 6.4 4.4 7.2 3.3 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1232) SBP_bac_3 PF00497.20 gi|336252599|ref|YP_004595706.1| - 4.3e-54 183.3 0.6 5e-54 183.1 0.6 1.0 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Lig_chan-Glu_bd PF10613.9 gi|336252599|ref|YP_004595706.1| - 5.6e-08 33.0 0.0 4.2e-07 30.2 0.0 2.2 1 1 0 1 1 1 1 Ligated ion channel L-glutamate- and glycine-binding site TAT_signal PF10518.9 gi|336252599|ref|YP_004595706.1| - 0.023 14.5 0.0 0.05 13.5 0.0 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence NMT1 PF09084.11 gi|336252599|ref|YP_004595706.1| - 0.027 14.4 0.1 0.87 9.5 0.0 2.2 1 1 1 2 2 2 0 NMT1/THI5 like PHO4 PF01384.20 gi|336252600|ref|YP_004595707.1| - 4.5e-44 150.9 34.7 4.5e-44 150.9 34.7 1.6 1 1 1 2 2 2 1 Phosphate transporter family DUF1449 PF07290.11 gi|336252601|ref|YP_004595708.1| - 0.0081 15.8 1.0 0.0081 15.8 1.0 1.6 1 1 1 2 2 2 1 Protein of unknown function (DUF1449) DUF2975 PF11188.8 gi|336252601|ref|YP_004595708.1| - 7.1 6.5 8.5 7.8 6.4 3.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2975) DUF21 PF01595.20 gi|336252602|ref|YP_004595709.1| - 2.8e-49 167.2 0.7 4.7e-49 166.5 0.7 1.4 1 0 0 1 1 1 1 Cyclin M transmembrane N-terminal domain CorC_HlyC PF03471.17 gi|336252602|ref|YP_004595709.1| - 6.9e-21 74.1 3.3 6.9e-21 74.1 3.3 2.0 2 0 0 2 2 2 1 Transporter associated domain CBS PF00571.28 gi|336252602|ref|YP_004595709.1| - 1.3e-13 51.1 3.1 1.7e-06 28.4 0.2 3.1 2 0 0 2 2 2 2 CBS domain WSS_VP PF12175.8 gi|336252602|ref|YP_004595709.1| - 0.056 12.9 0.1 0.056 12.9 0.1 1.8 2 0 0 2 2 2 0 White spot syndrome virus structural envelope protein VP DUF4233 PF14017.6 gi|336252602|ref|YP_004595709.1| - 7.7 6.9 6.8 3.9 7.9 2.9 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF4233) GST_N_3 PF13417.6 gi|336252603|ref|YP_004595710.1| - 1.2e-13 51.2 0.0 1.4e-13 51.0 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Glutaredoxin PF00462.24 gi|336252603|ref|YP_004595710.1| - 3.8e-12 46.2 0.1 5.6e-12 45.7 0.1 1.2 1 0 0 1 1 1 1 Glutaredoxin GST_N_2 PF13409.6 gi|336252603|ref|YP_004595710.1| - 2.6e-11 43.7 0.0 3.1e-11 43.4 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N PF02798.20 gi|336252603|ref|YP_004595710.1| - 1.5e-05 25.3 0.0 1.9e-05 24.9 0.0 1.2 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain DUF836 PF05768.14 gi|336252603|ref|YP_004595710.1| - 0.028 14.8 0.1 0.038 14.4 0.1 1.5 1 1 0 1 1 1 0 Glutaredoxin-like domain (DUF836) TraF PF13728.6 gi|336252603|ref|YP_004595710.1| - 0.077 12.8 0.1 0.12 12.1 0.1 1.5 1 1 0 1 1 1 0 F plasmid transfer operon protein Redoxin PF08534.10 gi|336252603|ref|YP_004595710.1| - 0.14 11.9 0.0 0.19 11.4 0.0 1.3 1 1 0 1 1 1 0 Redoxin AhpC-TSA PF00578.21 gi|336252604|ref|YP_004595711.1| - 1.5e-13 50.8 0.0 1.8e-13 50.5 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|336252604|ref|YP_004595711.1| - 3.5e-07 30.0 0.0 5.6e-07 29.4 0.0 1.4 1 1 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.6 gi|336252604|ref|YP_004595711.1| - 0.00035 20.7 0.0 0.00048 20.2 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA antioxidant enzyme DUF4082 PF13313.6 gi|336252604|ref|YP_004595711.1| - 0.075 13.1 0.0 0.1 12.6 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4082) Sua5_yciO_yrdC PF01300.18 gi|336252605|ref|YP_004595712.1| - 5.4e-48 162.8 0.0 6.3e-48 162.6 0.0 1.0 1 0 0 1 1 1 1 Telomere recombination Amidohydro_1 PF01979.20 gi|336252607|ref|YP_004595714.1| - 5e-39 134.6 0.0 2.3e-38 132.4 0.0 1.8 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|336252607|ref|YP_004595714.1| - 4.1e-17 62.8 4.0 7.5e-12 45.5 0.3 2.3 1 1 1 2 2 2 2 Amidohydrolase family HTH_10 PF04967.12 gi|336252608|ref|YP_004595715.1| - 8.7e-14 51.1 0.1 1.4e-13 50.5 0.1 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4_2 PF08281.12 gi|336252608|ref|YP_004595715.1| - 6.3e-06 25.8 0.4 8e-05 22.2 0.4 2.2 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_psq PF05225.16 gi|336252608|ref|YP_004595715.1| - 0.007 16.1 0.1 0.015 15.0 0.1 1.5 1 0 0 1 1 1 1 helix-turn-helix, Psq domain HTH_30 PF13556.6 gi|336252608|ref|YP_004595715.1| - 0.011 15.6 0.0 0.024 14.4 0.0 1.6 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain HTH_24 PF13412.6 gi|336252608|ref|YP_004595715.1| - 0.052 13.1 0.0 0.097 12.2 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_Tnp_1_2 PF13022.6 gi|336252608|ref|YP_004595715.1| - 0.061 13.5 0.0 0.11 12.7 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase HAD PF12710.7 gi|336252609|ref|YP_004595716.1| - 2.2e-24 86.9 1.3 2.6e-24 86.7 1.3 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|336252609|ref|YP_004595716.1| - 6.8e-15 55.9 11.6 7.4e-13 49.3 5.7 2.1 1 1 0 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|336252609|ref|YP_004595716.1| - 7.7e-11 42.2 1.3 6.7e-09 35.9 0.1 2.9 3 0 0 3 3 3 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|336252609|ref|YP_004595716.1| - 6.7e-07 29.6 0.2 7.1e-05 23.0 0.0 2.4 2 1 0 2 2 2 1 Haloacid dehalogenase-like hydrolase UMPH-1 PF05822.12 gi|336252609|ref|YP_004595716.1| - 0.0029 17.2 0.0 0.0051 16.3 0.0 1.4 1 1 0 1 1 1 1 Pyrimidine 5'-nucleotidase (UMPH-1) Put_Phosphatase PF06888.12 gi|336252609|ref|YP_004595716.1| - 0.065 12.6 0.0 0.83 9.0 0.0 2.0 2 0 0 2 2 2 0 Putative Phosphatase HXXSHH PF07586.11 gi|336252609|ref|YP_004595716.1| - 0.14 11.7 0.0 0.17 11.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1552) S6PP PF05116.13 gi|336252609|ref|YP_004595716.1| - 0.2 11.2 0.0 0.42 10.1 0.0 1.5 1 0 0 1 1 1 0 Sucrose-6F-phosphate phosphohydrolase PAS_4 PF08448.10 gi|336252610|ref|YP_004595717.1| - 2.1e-22 79.5 1.7 2.1e-10 40.8 0.1 2.9 3 1 1 4 4 4 2 PAS fold PAS_9 PF13426.7 gi|336252610|ref|YP_004595717.1| - 6.9e-21 74.5 0.0 3.2e-10 40.2 0.0 2.7 3 0 0 3 3 3 2 PAS domain HATPase_c PF02518.26 gi|336252610|ref|YP_004595717.1| - 5.1e-17 62.4 0.0 9.7e-17 61.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.25 gi|336252610|ref|YP_004595717.1| - 2e-16 60.0 0.0 1.9e-11 43.9 0.0 2.8 2 1 0 2 2 2 2 PAS fold PAS_8 PF13188.7 gi|336252610|ref|YP_004595717.1| - 6.6e-14 51.5 0.0 3e-07 30.3 0.0 3.6 3 0 0 3 3 3 2 PAS domain HATPase_c_2 PF13581.6 gi|336252610|ref|YP_004595717.1| - 1.2e-07 31.7 0.2 1.2e-07 31.7 0.2 2.0 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain PAS_3 PF08447.12 gi|336252610|ref|YP_004595717.1| - 1e-05 25.7 0.0 0.00013 22.2 0.0 2.4 2 0 0 2 2 2 1 PAS fold HisKA PF00512.25 gi|336252610|ref|YP_004595717.1| - 0.0035 17.3 0.3 0.011 15.8 0.1 2.0 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.6 gi|336252610|ref|YP_004595717.1| - 0.0061 16.5 0.0 0.011 15.6 0.0 1.4 1 0 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.6 gi|336252610|ref|YP_004595717.1| - 0.023 14.5 0.0 0.041 13.7 0.0 1.3 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA_4TM PF16926.5 gi|336252610|ref|YP_004595717.1| - 0.044 13.3 0.1 0.075 12.6 0.1 1.3 1 0 0 1 1 1 0 Archaeal 4TM region of histidine kinase PAS_7 PF12860.7 gi|336252610|ref|YP_004595717.1| - 0.068 13.3 0.0 1.5 9.0 0.0 2.6 2 0 0 2 2 2 0 PAS fold PAS_12 PF18095.1 gi|336252610|ref|YP_004595717.1| - 0.13 11.9 0.0 0.22 11.1 0.0 1.3 1 0 0 1 1 1 0 UPF0242 C-terminal PAS-like domain 2-Hacid_dh_C PF02826.19 gi|336252611|ref|YP_004595718.1| - 1.5e-60 203.6 0.0 3e-60 202.6 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|336252611|ref|YP_004595718.1| - 2.9e-37 127.3 0.4 5e-37 126.6 0.4 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IlvN PF07991.12 gi|336252611|ref|YP_004595718.1| - 1.1e-05 25.0 0.0 7.4e-05 22.4 0.0 2.2 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain ACT PF01842.25 gi|336252611|ref|YP_004595718.1| - 2.3e-05 24.1 0.6 6.4e-05 22.6 0.0 2.2 2 0 0 2 2 2 1 ACT domain UDPG_MGDP_dh_C PF03720.15 gi|336252611|ref|YP_004595718.1| - 0.00016 22.0 0.0 0.00072 19.9 0.0 2.1 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_binding_7 PF13241.6 gi|336252611|ref|YP_004595718.1| - 0.0014 19.1 0.0 0.0037 17.7 0.0 1.8 1 0 0 1 1 1 1 Putative NAD(P)-binding NAD_binding_2 PF03446.15 gi|336252611|ref|YP_004595718.1| - 0.0031 17.7 2.2 0.018 15.2 0.0 3.0 4 0 0 4 4 4 1 NAD binding domain of 6-phosphogluconate dehydrogenase TrkA_N PF02254.18 gi|336252611|ref|YP_004595718.1| - 0.017 15.4 0.0 0.096 13.0 0.0 2.4 1 0 0 1 1 1 0 TrkA-N domain AdoHcyase_NAD PF00670.21 gi|336252611|ref|YP_004595718.1| - 0.018 15.1 0.1 0.11 12.6 0.0 2.1 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ELFV_dehydrog PF00208.21 gi|336252611|ref|YP_004595718.1| - 0.027 14.2 0.1 0.098 12.4 0.0 1.9 2 0 0 2 2 2 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase PDZ PF00595.24 gi|336252611|ref|YP_004595718.1| - 0.027 14.8 1.3 0.078 13.3 0.2 2.4 2 0 0 2 2 2 0 PDZ domain Lipase_GDSL_3 PF14606.6 gi|336252613|ref|YP_004595720.1| - 1.2e-27 97.2 0.0 1.5e-27 96.8 0.0 1.1 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family Lipase_GDSL_2 PF13472.6 gi|336252613|ref|YP_004595720.1| - 4.6e-15 56.5 0.2 7.1e-15 55.9 0.2 1.3 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family His_Phos_1 PF00300.22 gi|336252613|ref|YP_004595720.1| - 0.033 13.9 0.0 0.061 13.0 0.0 1.3 1 0 0 1 1 1 0 Histidine phosphatase superfamily (branch 1) PRA-CH PF01502.18 gi|336252614|ref|YP_004595721.1| - 2.9e-35 119.9 0.1 4.5e-35 119.3 0.1 1.3 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase EcoR124_C PF12008.8 gi|336252615|ref|YP_004595722.1| - 0.0081 15.8 1.0 0.013 15.2 0.2 1.7 2 0 0 2 2 2 1 Type I restriction and modification enzyme - subunit R C terminal Spc7 PF08317.11 gi|336252615|ref|YP_004595722.1| - 0.028 13.3 13.1 0.03 13.2 2.0 3.5 4 0 0 4 4 4 0 Spc7 kinetochore protein Mu-like_Pro PF10123.9 gi|336252615|ref|YP_004595722.1| - 0.12 11.9 0.2 0.12 11.9 0.2 2.8 2 1 1 3 3 3 0 Mu-like prophage I protein DLP_helical PF18709.1 gi|336252615|ref|YP_004595722.1| - 1.3 8.1 4.2 1.2 8.3 0.1 2.3 1 1 0 2 2 2 0 Dynamin-like helical domain DUF3106 PF11304.8 gi|336252615|ref|YP_004595722.1| - 6.1 7.4 7.9 2.4 8.6 0.3 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF3106) DASH_Spc19 PF08287.11 gi|336252615|ref|YP_004595722.1| - 6.7 6.6 8.1 9.5 6.1 0.3 3.3 4 0 0 4 4 4 0 Spc19 Usp PF00582.26 gi|336252616|ref|YP_004595723.1| - 4.9e-33 114.6 0.6 5.6e-33 114.4 0.6 1.0 1 0 0 1 1 1 1 Universal stress protein family HPP PF04982.13 gi|336252617|ref|YP_004595724.1| - 1e-18 67.7 8.2 1.7e-18 67.0 8.2 1.3 1 0 0 1 1 1 1 HPP family PGM_PMM_I PF02878.16 gi|336252618|ref|YP_004595725.1| - 6.4e-34 116.6 0.0 1.1e-33 115.9 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|336252618|ref|YP_004595725.1| - 6.8e-30 103.7 2.7 4.8e-29 101.0 0.3 2.6 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.20 gi|336252618|ref|YP_004595725.1| - 1.3e-15 57.3 0.1 4.3e-15 55.7 0.1 1.9 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain PGM_PMM_III PF02880.16 gi|336252618|ref|YP_004595725.1| - 1.7e-15 57.2 0.0 3.5e-15 56.2 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Usp PF00582.26 gi|336252618|ref|YP_004595725.1| - 0.24 11.9 5.0 2.1 8.8 0.1 2.9 3 0 0 3 3 3 0 Universal stress protein family SBP_bac_11 PF13531.6 gi|336252619|ref|YP_004595726.1| - 0.02 14.7 0.8 0.086 12.6 0.8 2.0 1 1 0 1 1 1 0 Bacterial extracellular solute-binding protein Pribosyltran_N PF13793.6 gi|336252621|ref|YP_004595728.1| - 1.2e-18 67.1 0.0 1.2e-17 63.9 0.0 2.1 2 0 0 2 2 2 1 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.27 gi|336252621|ref|YP_004595728.1| - 1.1e-11 44.5 0.9 6.5e-11 42.0 0.2 2.2 2 1 0 2 2 2 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.6 gi|336252621|ref|YP_004595728.1| - 5.1e-08 33.2 0.5 9.7e-08 32.3 0.5 1.4 1 0 0 1 1 1 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.6 gi|336252621|ref|YP_004595728.1| - 5.5e-05 22.7 0.0 0.0001 21.8 0.0 1.4 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Terminase_1 PF03354.15 gi|336252621|ref|YP_004595728.1| - 0.16 10.5 0.0 0.21 10.1 0.0 1.1 1 0 0 1 1 1 0 Phage Terminase HNOB PF07700.15 gi|336252622|ref|YP_004595729.1| - 1.7e-23 83.4 0.0 1.9e-23 83.2 0.0 1.0 1 0 0 1 1 1 1 Haem-NO-binding Thyroglob_assoc PF16597.5 gi|336252622|ref|YP_004595729.1| - 0.16 12.3 0.2 16 5.9 0.1 2.3 2 0 0 2 2 2 0 Thyroglobulin_1 repeat associated disordered domain CARDB PF07705.11 gi|336252623|ref|YP_004595730.1| - 7.2e-08 32.6 2.0 1.9e-06 28.0 0.2 3.2 2 1 1 3 3 3 1 CARDB ALF PF03752.13 gi|336252623|ref|YP_004595730.1| - 0.06 13.3 3.0 0.67 10.0 0.3 3.4 2 0 0 2 2 2 0 Short repeats of unknown function Chorion_3 PF05387.11 gi|336252623|ref|YP_004595730.1| - 0.28 10.8 4.7 2.2 7.8 1.0 2.6 2 0 0 2 2 2 0 Chorion family 3 tRNA-synt_1 PF00133.22 gi|336252624|ref|YP_004595731.1| - 1e-177 592.1 1.1 1.4e-177 591.6 1.1 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|336252624|ref|YP_004595731.1| - 8e-29 100.6 0.2 1.7e-28 99.5 0.2 1.6 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|336252624|ref|YP_004595731.1| - 2e-25 89.4 0.3 1.3e-09 37.3 0.0 3.7 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.6 gi|336252624|ref|YP_004595731.1| - 2.3e-05 24.0 0.0 6.4e-05 22.6 0.0 1.7 1 1 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.19 gi|336252624|ref|YP_004595731.1| - 0.0071 15.7 0.0 0.84 8.9 0.0 2.6 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain DUF2892 PF11127.8 gi|336252625|ref|YP_004595732.1| - 0.66 10.1 5.4 0.97 9.5 5.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2892) UDG PF03167.19 gi|336252626|ref|YP_004595733.1| - 3.2e-27 95.4 0.0 4e-27 95.1 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily HIT PF01230.23 gi|336252627|ref|YP_004595734.1| - 3e-28 98.4 0.0 3.7e-28 98.1 0.0 1.1 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.8 gi|336252627|ref|YP_004595734.1| - 5.9e-16 59.0 0.0 7.3e-16 58.7 0.0 1.1 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.15 gi|336252627|ref|YP_004595734.1| - 0.033 14.0 0.0 0.048 13.5 0.0 1.2 1 0 0 1 1 1 0 Protein similar to CwfJ C-terminus 1 Arc_PepC_II PF06847.11 gi|336252629|ref|YP_004595736.1| - 3.3e-10 40.3 1.4 5.8e-08 33.2 0.1 2.9 4 0 0 4 4 4 2 Archaeal Peptidase A24 C-terminus Type II Peptidase_A24 PF01478.18 gi|336252629|ref|YP_004595736.1| - 7.2e-07 29.6 10.0 7.2e-07 29.6 10.0 1.8 2 1 0 2 2 2 1 Type IV leader peptidase family MCPsignal PF00015.21 gi|336252630|ref|YP_004595737.1| - 8.8e-46 155.9 45.9 1.1e-43 149.1 27.9 3.2 1 1 2 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF948 PF06103.11 gi|336252630|ref|YP_004595737.1| - 1.1e-06 28.8 32.3 0.0048 17.1 4.3 4.2 2 2 1 4 4 4 2 Bacterial protein of unknown function (DUF948) DUF1664 PF07889.12 gi|336252630|ref|YP_004595737.1| - 9.7e-05 22.4 25.7 0.09 12.8 0.7 4.1 2 1 2 4 4 4 4 Protein of unknown function (DUF1664) Laminin_II PF06009.12 gi|336252630|ref|YP_004595737.1| - 0.00021 21.3 37.0 0.029 14.4 5.2 4.1 3 1 1 4 4 4 3 Laminin Domain II Syntaxin-6_N PF09177.11 gi|336252630|ref|YP_004595737.1| - 0.0036 17.8 24.7 2.3 8.8 1.0 4.0 2 2 1 3 3 3 3 Syntaxin 6, N-terminal CREPT PF16566.5 gi|336252630|ref|YP_004595737.1| - 0.0089 16.2 13.7 0.23 11.6 1.4 2.8 1 1 1 3 3 3 2 Cell-cycle alteration and expression-elevated protein in tumour COG2 PF06148.11 gi|336252630|ref|YP_004595737.1| - 0.01 16.0 2.4 0.01 16.0 2.4 4.4 2 2 2 4 4 4 1 COG (conserved oligomeric Golgi) complex component, COG2 RmuC PF02646.16 gi|336252630|ref|YP_004595737.1| - 0.019 14.1 15.6 0.24 10.5 1.5 3.9 2 2 2 4 4 4 0 RmuC family PIN_6 PF17146.4 gi|336252630|ref|YP_004595737.1| - 0.032 14.7 11.9 0.047 14.2 0.4 3.7 2 1 2 4 4 4 0 PIN domain of ribonuclease Spectrin PF00435.21 gi|336252630|ref|YP_004595737.1| - 0.041 14.4 1.0 0.041 14.4 1.0 3.8 1 1 3 4 4 4 0 Spectrin repeat BLOC1_2 PF10046.9 gi|336252630|ref|YP_004595737.1| - 0.064 13.6 25.5 2.2 8.6 0.5 4.8 3 1 1 4 4 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Fib_alpha PF08702.10 gi|336252630|ref|YP_004595737.1| - 0.077 13.2 17.7 0.14 12.3 2.1 3.1 2 2 0 2 2 2 0 Fibrinogen alpha/beta chain family DASH_Dam1 PF08653.10 gi|336252630|ref|YP_004595737.1| - 0.15 11.9 6.8 0.51 10.2 0.1 4.0 4 1 0 4 4 3 0 DASH complex subunit Dam1 FlgN PF05130.12 gi|336252630|ref|YP_004595737.1| - 0.15 12.5 20.1 0.11 13.1 3.0 3.3 1 1 3 4 4 4 0 FlgN protein MAD PF05557.13 gi|336252630|ref|YP_004595737.1| - 0.34 9.2 20.9 1.1 7.5 14.3 2.2 1 1 1 2 2 2 0 Mitotic checkpoint protein STAT_alpha PF01017.20 gi|336252630|ref|YP_004595737.1| - 0.34 10.8 8.6 3 7.7 3.2 2.7 1 1 2 3 3 3 0 STAT protein, all-alpha domain HisK_N PF09385.10 gi|336252630|ref|YP_004595737.1| - 0.44 10.5 5.2 0.19 11.7 0.5 2.5 2 1 0 3 3 3 0 Histidine kinase N terminal LXG PF04740.12 gi|336252630|ref|YP_004595737.1| - 0.58 9.8 26.6 0.054 13.2 4.9 3.6 1 1 2 3 3 3 0 LXG domain of WXG superfamily Mod_r PF07200.13 gi|336252630|ref|YP_004595737.1| - 0.63 10.1 16.6 0.36 10.9 0.6 3.4 1 1 1 3 3 3 0 Modifier of rudimentary (Mod(r)) protein CorA PF01544.18 gi|336252630|ref|YP_004595737.1| - 0.75 9.0 17.0 1.5 8.1 4.1 2.2 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein Laminin_I PF06008.14 gi|336252630|ref|YP_004595737.1| - 0.84 9.3 29.4 0.25 11.0 3.6 3.4 1 1 2 3 3 3 0 Laminin Domain I YkyA PF10368.9 gi|336252630|ref|YP_004595737.1| - 0.93 9.1 34.3 0.11 12.2 2.1 3.9 1 1 3 4 4 4 0 Putative cell-wall binding lipoprotein Snapin_Pallidin PF14712.6 gi|336252630|ref|YP_004595737.1| - 0.96 9.9 14.1 5.7 7.4 1.5 4.0 1 1 5 6 6 6 0 Snapin/Pallidin DUF2203 PF09969.9 gi|336252630|ref|YP_004595737.1| - 1 10.1 23.0 3 8.6 2.8 3.6 1 1 2 4 4 4 0 Uncharacterized conserved protein (DUF2203) Spc7 PF08317.11 gi|336252630|ref|YP_004595737.1| - 1.1 8.0 28.5 0.34 9.7 7.2 2.6 1 1 2 3 3 3 0 Spc7 kinetochore protein ISG65-75 PF11727.8 gi|336252630|ref|YP_004595737.1| - 1.2 8.3 29.4 3.1 6.9 3.0 2.9 1 1 2 3 3 3 0 Invariant surface glycoprotein SKA1 PF07160.12 gi|336252630|ref|YP_004595737.1| - 1.2 8.9 16.3 3 7.6 8.1 2.6 2 1 0 2 2 2 0 Spindle and kinetochore-associated protein 1 Seryl_tRNA_N PF02403.22 gi|336252630|ref|YP_004595737.1| - 1.5 9.0 27.1 2.7 8.2 0.9 4.2 2 2 2 4 4 4 0 Seryl-tRNA synthetase N-terminal domain SesA PF17107.5 gi|336252630|ref|YP_004595737.1| - 1.6 9.0 19.0 5 7.3 6.7 3.9 1 1 2 3 3 3 0 N-terminal domain on NACHT_NTPase and P-loop NTPases Sec34 PF04136.15 gi|336252630|ref|YP_004595737.1| - 2 8.3 17.0 15 5.4 4.2 4.0 2 2 1 4 4 4 0 Sec34-like family Fzo_mitofusin PF04799.13 gi|336252630|ref|YP_004595737.1| - 2.2 7.8 15.4 2.5 7.7 0.4 3.9 2 2 2 4 4 4 0 fzo-like conserved region CheZ PF04344.13 gi|336252630|ref|YP_004595737.1| - 2.6 7.9 21.9 4 7.3 8.3 3.0 1 1 1 2 2 2 0 Chemotaxis phosphatase, CheZ SKA2 PF16740.5 gi|336252630|ref|YP_004595737.1| - 2.8 7.7 18.0 0.55 10.0 0.7 3.9 1 1 1 3 3 3 0 Spindle and kinetochore-associated protein 2 COG5 PF10392.9 gi|336252630|ref|YP_004595737.1| - 3.3 7.9 14.1 0.34 11.1 0.5 3.4 2 2 1 3 3 3 0 Golgi transport complex subunit 5 Atg14 PF10186.9 gi|336252630|ref|YP_004595737.1| - 3.4 6.7 11.7 6.9 5.7 2.1 3.1 1 1 2 3 3 3 0 Vacuolar sorting 38 and autophagy-related subunit 14 Dor1 PF04124.12 gi|336252630|ref|YP_004595737.1| - 3.5 6.2 15.1 3 6.4 3.2 2.9 2 1 0 2 2 2 0 Dor1-like family Prominin PF05478.11 gi|336252630|ref|YP_004595737.1| - 3.9 5.3 14.4 3.2 5.6 4.7 2.2 1 1 1 2 2 2 0 Prominin T3SSipB PF16535.5 gi|336252630|ref|YP_004595737.1| - 4 7.9 29.1 1.3 9.5 9.7 2.6 1 1 2 3 3 3 0 Type III cell invasion protein SipB FUSC PF04632.12 gi|336252630|ref|YP_004595737.1| - 4.8 5.6 9.8 31 2.9 9.8 2.0 1 1 0 1 1 1 0 Fusaric acid resistance protein family DUF489 PF04356.12 gi|336252630|ref|YP_004595737.1| - 5.1 7.1 8.3 4.7 7.2 2.0 3.2 1 1 2 3 3 3 0 Protein of unknown function (DUF489) Med9 PF07544.13 gi|336252630|ref|YP_004595737.1| - 5.2 7.2 11.3 14 5.9 1.4 4.2 1 1 2 3 3 3 0 RNA polymerase II transcription mediator complex subunit 9 APG17 PF04108.12 gi|336252630|ref|YP_004595737.1| - 6.4 5.8 29.6 6.8 5.7 14.6 3.0 1 1 2 3 3 3 0 Autophagy protein Apg17 TMPIT PF07851.13 gi|336252630|ref|YP_004595737.1| - 6.5 5.9 16.6 2.4 7.3 1.1 3.1 1 1 3 4 4 4 0 TMPIT-like protein CENP-H PF05837.12 gi|336252630|ref|YP_004595737.1| - 7.6 7.0 27.1 5.4 7.5 2.3 3.8 1 1 3 4 4 4 0 Centromere protein H (CENP-H) V_ATPase_I PF01496.19 gi|336252630|ref|YP_004595737.1| - 7.9 4.3 18.8 1.8 6.4 12.0 2.0 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family Peptidase_M9_N PF08453.10 gi|336252630|ref|YP_004595737.1| - 7.9 6.1 9.5 1 9.1 1.1 2.9 1 1 3 4 4 4 0 Peptidase family M9 N-terminal SpoIIAA-like PF11964.8 gi|336252631|ref|YP_004595738.1| - 0.079 14.0 0.9 0.13 13.3 0.9 1.5 1 1 0 1 1 1 0 SpoIIAA-like Fer2 PF00111.27 gi|336252632|ref|YP_004595739.1| - 4.7e-15 55.3 0.4 6.3e-15 54.9 0.4 1.2 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.6 gi|336252632|ref|YP_004595739.1| - 0.074 13.1 0.2 0.14 12.3 0.2 1.6 1 1 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain PHO4 PF01384.20 gi|336252633|ref|YP_004595740.1| - 7.6e-39 133.7 33.9 8.8e-39 133.5 32.4 1.8 1 1 1 2 2 2 1 Phosphate transporter family Usp PF00582.26 gi|336252634|ref|YP_004595741.1| - 8e-24 84.7 2.7 9.3e-24 84.5 2.7 1.1 1 0 0 1 1 1 1 Universal stress protein family AA_permease_2 PF13520.6 gi|336252635|ref|YP_004595742.1| - 3.6e-44 151.3 36.3 4.3e-44 151.0 36.3 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|336252635|ref|YP_004595742.1| - 1.9e-35 122.4 33.3 2.5e-35 122.0 33.3 1.2 1 0 0 1 1 1 1 Amino acid permease Spore_permease PF03845.13 gi|336252635|ref|YP_004595742.1| - 0.0022 16.9 6.7 0.011 14.6 6.7 2.0 1 1 0 1 1 1 1 Spore germination protein AA_permease_C PF13906.6 gi|336252635|ref|YP_004595742.1| - 0.029 14.5 1.8 0.029 14.5 1.8 2.9 3 0 0 3 3 3 0 C-terminus of AA_permease Usp PF00582.26 gi|336252636|ref|YP_004595743.1| - 1.9e-06 28.5 5.3 7.5e-05 23.3 2.8 2.9 2 1 0 2 2 2 1 Universal stress protein family Usp PF00582.26 gi|336252637|ref|YP_004595744.1| - 6.9e-06 26.6 5.0 2.2e-05 25.0 4.3 2.0 2 0 0 2 2 2 1 Universal stress protein family PHO4 PF01384.20 gi|336252638|ref|YP_004595745.1| - 6.8e-40 137.1 27.4 1.5e-39 136.0 27.4 1.5 1 1 0 1 1 1 1 Phosphate transporter family SpoVS PF04232.12 gi|336252638|ref|YP_004595745.1| - 0.13 12.0 0.5 1.1 9.0 0.1 2.7 2 1 0 2 2 2 0 Stage V sporulation protein S (SpoVS) ATP-cone PF03477.16 gi|336252639|ref|YP_004595746.1| - 0.026 15.1 1.3 0.037 14.6 1.3 1.2 1 0 0 1 1 1 0 ATP cone domain DUF2884 PF11101.8 gi|336252639|ref|YP_004595746.1| - 0.032 13.7 0.2 0.044 13.3 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2884) DUF5082 PF16888.5 gi|336252639|ref|YP_004595746.1| - 0.037 14.3 0.2 0.049 13.9 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF5082) CobD_Cbib PF03186.13 gi|336252639|ref|YP_004595746.1| - 0.12 11.6 0.2 0.14 11.4 0.2 1.0 1 0 0 1 1 1 0 CobD/Cbib protein CSN4_RPN5_eIF3a PF18420.1 gi|336252639|ref|YP_004595746.1| - 0.17 12.1 1.1 0.37 11.0 0.3 1.8 2 0 0 2 2 2 0 CSN4/RPN5/eIF3a helix turn helix domain GCIP PF13324.6 gi|336252639|ref|YP_004595746.1| - 1.3 8.6 4.9 1.7 8.2 4.9 1.1 1 0 0 1 1 1 0 Grap2 and cyclin-D-interacting CitMHS PF03600.16 gi|336252640|ref|YP_004595747.1| - 2.5e-58 197.6 14.6 4.1e-58 196.9 14.6 1.3 1 0 0 1 1 1 1 Citrate transporter Na_sulph_symp PF00939.19 gi|336252640|ref|YP_004595747.1| - 6.7e-24 84.8 37.4 2.7e-16 59.7 18.6 3.1 2 1 1 3 3 3 3 Sodium:sulfate symporter transmembrane region TrkA_C PF02080.21 gi|336252640|ref|YP_004595747.1| - 1.6e-18 66.2 6.6 5.7e-11 42.1 0.9 2.4 2 0 0 2 2 2 2 TrkA-C domain His_biosynth PF00977.21 gi|336252641|ref|YP_004595748.1| - 1e-78 264.0 4.0 1.1e-78 263.8 4.0 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.17 gi|336252641|ref|YP_004595748.1| - 9.9e-13 47.8 0.1 5.1e-06 25.8 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) DHO_dh PF01180.21 gi|336252641|ref|YP_004595748.1| - 5e-12 45.6 0.6 4.2e-08 32.8 0.1 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase ThiG PF05690.14 gi|336252641|ref|YP_004595748.1| - 1.3e-10 41.0 6.1 5.9e-05 22.5 0.3 2.1 1 1 0 2 2 2 2 Thiazole biosynthesis protein ThiG Trp_syntA PF00290.20 gi|336252641|ref|YP_004595748.1| - 5.7e-08 31.9 1.3 0.00099 18.0 0.2 2.2 2 0 0 2 2 2 2 Tryptophan synthase alpha chain NMO PF03060.15 gi|336252641|ref|YP_004595748.1| - 2e-07 30.7 13.5 1.5e-05 24.6 4.8 2.1 1 1 1 2 2 2 2 Nitronate monooxygenase IMPDH PF00478.25 gi|336252641|ref|YP_004595748.1| - 5.7e-06 25.6 2.0 0.0016 17.5 0.3 2.2 2 0 0 2 2 2 2 IMP dehydrogenase / GMP reductase domain IGPS PF00218.21 gi|336252641|ref|YP_004595748.1| - 5.7e-06 25.7 1.0 0.0013 18.0 0.0 3.3 2 2 2 4 4 4 1 Indole-3-glycerol phosphate synthase PcrB PF01884.17 gi|336252641|ref|YP_004595748.1| - 1.2e-05 24.9 5.1 0.0088 15.5 0.3 2.3 2 1 0 2 2 2 2 PcrB family NanE PF04131.14 gi|336252641|ref|YP_004595748.1| - 3.2e-05 23.2 3.2 0.0077 15.4 0.5 2.6 1 1 2 3 3 3 2 Putative N-acetylmannosamine-6-phosphate epimerase G3P_antiterm PF04309.12 gi|336252641|ref|YP_004595748.1| - 3.5e-05 23.3 1.2 0.002 17.5 0.1 2.2 2 0 0 2 2 2 1 Glycerol-3-phosphate responsive antiterminator TMP-TENI PF02581.17 gi|336252641|ref|YP_004595748.1| - 9e-05 21.9 3.6 0.0033 16.8 0.7 2.2 2 0 0 2 2 2 2 Thiamine monophosphate synthase B12-binding PF02310.19 gi|336252641|ref|YP_004595748.1| - 0.0028 17.7 4.3 0.6 10.2 0.1 2.6 1 1 1 2 2 2 2 B12 binding domain FMN_dh PF01070.18 gi|336252641|ref|YP_004595748.1| - 0.0058 15.7 10.8 0.042 12.9 2.1 2.1 2 0 0 2 2 2 2 FMN-dependent dehydrogenase DNA_pol_lambd_f PF10391.9 gi|336252641|ref|YP_004595748.1| - 0.096 12.5 0.0 16 5.4 0.0 2.9 3 0 0 3 3 3 0 Fingers domain of DNA polymerase lambda TBP-binding PF09247.11 gi|336252641|ref|YP_004595748.1| - 0.13 12.5 0.0 0.25 11.6 0.0 1.4 1 0 0 1 1 1 0 TATA box-binding protein binding Ribul_P_3_epim PF00834.19 gi|336252641|ref|YP_004595748.1| - 0.17 11.3 1.4 0.43 9.9 0.1 2.2 2 1 0 2 2 2 0 Ribulose-phosphate 3 epimerase family Glyco_trans_4_4 PF13579.6 gi|336252641|ref|YP_004595748.1| - 5.1 7.5 8.3 14 6.1 2.4 2.8 3 1 0 3 3 2 0 Glycosyl transferase 4-like domain MFS_1 PF07690.16 gi|336252642|ref|YP_004595749.1| - 2e-34 119.1 56.5 1.9e-21 76.4 26.3 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Copper-bind PF00127.20 gi|336252643|ref|YP_004595750.1| - 1.4e-07 31.9 0.0 2.3e-07 31.2 0.0 1.4 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family TAT_signal PF10518.9 gi|336252643|ref|YP_004595750.1| - 0.0086 15.9 7.5 0.012 15.4 7.5 1.2 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Secretin_N_2 PF07655.13 gi|336252643|ref|YP_004595750.1| - 0.011 16.3 0.8 0.011 16.3 0.8 1.7 2 0 0 2 2 2 0 Secretin N-terminal domain Aminotran_5 PF00266.19 gi|336252644|ref|YP_004595751.1| - 8.5e-29 100.6 0.0 1.1e-28 100.3 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Glyco_hydro_1 PF00232.18 gi|336252644|ref|YP_004595751.1| - 0.02 13.3 0.1 0.14 10.6 0.0 2.0 2 0 0 2 2 2 0 Glycosyl hydrolase family 1 Peptidase_S8 PF00082.22 gi|336252645|ref|YP_004595752.1| - 1.7e-49 168.7 2.6 2.6e-49 168.1 2.6 1.2 1 0 0 1 1 1 1 Subtilase family eIF-1a PF01176.19 gi|336252646|ref|YP_004595753.1| - 6.1e-25 86.8 0.2 7.6e-25 86.5 0.2 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 ChapFlgA_N PF17656.1 gi|336252646|ref|YP_004595753.1| - 0.0099 16.0 0.0 0.018 15.2 0.0 1.4 1 0 0 1 1 1 1 FlgA N-terminal domain Sclerostin PF05463.11 gi|336252646|ref|YP_004595753.1| - 0.076 12.7 0.0 0.098 12.4 0.0 1.1 1 0 0 1 1 1 0 Sclerostin (SOST) zinc_ribbon_5 PF13719.6 gi|336252646|ref|YP_004595753.1| - 0.13 12.0 0.0 0.24 11.2 0.0 1.4 1 0 0 1 1 1 0 zinc-ribbon domain MS_channel PF00924.18 gi|336252647|ref|YP_004595754.1| - 2.2 7.8 10.2 2.4 7.6 10.2 1.0 1 0 0 1 1 1 0 Mechanosensitive ion channel DUF460 PF04312.13 gi|336252649|ref|YP_004595756.1| - 3.7e-51 172.5 0.4 1.6e-50 170.5 0.1 2.2 3 0 0 3 3 2 1 Protein of unknown function (DUF460) acVLRF1 PF18859.1 gi|336252649|ref|YP_004595756.1| - 0.00036 20.8 2.1 0.00036 20.8 2.1 4.3 3 1 1 4 4 3 1 Actinobacteria/chloroflexi VLRF1 release factor FPP PF05911.11 gi|336252649|ref|YP_004595756.1| - 0.001 17.4 11.1 0.0014 16.9 11.1 1.1 1 0 0 1 1 1 1 Filament-like plant protein, long coiled-coil MAD PF05557.13 gi|336252649|ref|YP_004595756.1| - 0.0018 16.7 20.4 0.0032 15.9 20.4 1.3 1 0 0 1 1 1 1 Mitotic checkpoint protein Exonuc_VII_L PF02601.15 gi|336252649|ref|YP_004595756.1| - 0.0032 17.1 5.2 0.0062 16.1 5.2 1.5 1 0 0 1 1 1 1 Exonuclease VII, large subunit DUF5082 PF16888.5 gi|336252649|ref|YP_004595756.1| - 0.0037 17.5 6.4 0.53 10.6 1.5 2.5 2 0 0 2 2 2 2 Domain of unknown function (DUF5082) HMMR_N PF15905.5 gi|336252649|ref|YP_004595756.1| - 0.0049 16.4 19.6 0.0089 15.5 19.6 1.3 1 0 0 1 1 1 1 Hyaluronan mediated motility receptor N-terminal DUF812 PF05667.11 gi|336252649|ref|YP_004595756.1| - 0.0051 15.8 11.0 0.01 14.8 11.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF812) DUF4407 PF14362.6 gi|336252649|ref|YP_004595756.1| - 0.0053 16.2 12.3 0.012 14.9 12.3 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4407) DUF4094 PF13334.6 gi|336252649|ref|YP_004595756.1| - 0.02 15.3 2.4 0.02 15.3 2.4 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4094) FAM76 PF16046.5 gi|336252649|ref|YP_004595756.1| - 0.064 12.6 8.4 0.1 12.0 8.4 1.2 1 0 0 1 1 1 0 FAM76 protein BtrH_N PF14399.6 gi|336252649|ref|YP_004595756.1| - 0.085 13.1 0.1 9.9 6.4 0.0 3.2 2 1 1 3 3 3 0 Butirosin biosynthesis protein H, N-terminal Prefoldin PF02996.17 gi|336252649|ref|YP_004595756.1| - 0.085 12.8 7.7 0.4 10.6 2.9 2.5 2 0 0 2 2 2 0 Prefoldin subunit HOOK PF05622.12 gi|336252649|ref|YP_004595756.1| - 0.17 10.0 23.1 0.42 8.7 22.9 1.6 1 1 1 2 2 2 0 HOOK protein YPEB PF14620.6 gi|336252649|ref|YP_004595756.1| - 0.17 11.2 6.0 0.3 10.4 6.0 1.3 1 0 0 1 1 1 0 YpeB sporulation AAA_13 PF13166.6 gi|336252649|ref|YP_004595756.1| - 0.21 10.2 7.0 0.35 9.5 7.0 1.3 1 0 0 1 1 1 0 AAA domain DUF1664 PF07889.12 gi|336252649|ref|YP_004595756.1| - 0.22 11.6 11.0 0.38 10.8 7.1 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) Atg14 PF10186.9 gi|336252649|ref|YP_004595756.1| - 0.3 10.1 14.9 0.5 9.4 14.9 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 DUF2968 PF11180.8 gi|336252649|ref|YP_004595756.1| - 0.36 10.5 16.5 0.092 12.4 12.7 1.9 2 0 0 2 2 1 0 Protein of unknown function (DUF2968) Fungal_TACC PF12709.7 gi|336252649|ref|YP_004595756.1| - 0.38 11.2 11.8 1.3 9.5 2.1 2.6 1 1 1 2 2 2 0 Fungal Transforming acidic coiled-coil (TACC) proteins DUF724 PF05266.14 gi|336252649|ref|YP_004595756.1| - 0.4 10.5 12.4 0.92 9.3 12.4 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF724) DUF948 PF06103.11 gi|336252649|ref|YP_004595756.1| - 0.49 10.7 2.1 1.6 9.0 0.9 2.4 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) NPV_P10 PF05531.12 gi|336252649|ref|YP_004595756.1| - 0.51 10.8 3.7 1.5 9.3 1.4 2.7 2 1 1 3 3 2 0 Nucleopolyhedrovirus P10 protein Herpes_UL6 PF01763.16 gi|336252649|ref|YP_004595756.1| - 0.53 8.7 4.4 0.82 8.1 4.4 1.2 1 0 0 1 1 1 0 Herpesvirus UL6 like FlaC_arch PF05377.11 gi|336252649|ref|YP_004595756.1| - 0.72 10.3 12.3 1.8 9.0 2.8 3.0 3 0 0 3 3 2 0 Flagella accessory protein C (FlaC) FapA PF03961.13 gi|336252649|ref|YP_004595756.1| - 1.1 7.8 7.7 2.1 6.9 7.7 1.4 1 0 0 1 1 1 0 Flagellar Assembly Protein A CENP-F_leu_zip PF10473.9 gi|336252649|ref|YP_004595756.1| - 1.2 9.2 26.9 1.6 8.7 4.4 3.0 2 1 1 3 3 3 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Lectin_N PF03954.14 gi|336252649|ref|YP_004595756.1| - 1.2 8.9 4.4 7.6 6.3 1.1 2.7 3 0 0 3 3 3 0 Hepatic lectin, N-terminal domain BLOC1_2 PF10046.9 gi|336252649|ref|YP_004595756.1| - 1.2 9.4 9.9 1.2 9.5 3.8 2.7 1 1 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF641 PF04859.12 gi|336252649|ref|YP_004595756.1| - 1.3 9.4 16.9 0.18 12.1 7.0 2.7 1 1 1 2 2 2 0 Plant protein of unknown function (DUF641) TMF_DNA_bd PF12329.8 gi|336252649|ref|YP_004595756.1| - 1.3 9.0 28.1 0.24 11.4 12.1 3.3 3 1 1 4 4 2 0 TATA element modulatory factor 1 DNA binding FlaG PF03646.15 gi|336252649|ref|YP_004595756.1| - 1.5 9.1 10.0 1.2 9.3 1.8 2.7 2 0 0 2 2 2 0 FlaG protein Spc7 PF08317.11 gi|336252649|ref|YP_004595756.1| - 1.7 7.5 22.2 6.2 5.6 22.1 1.9 1 1 0 1 1 1 0 Spc7 kinetochore protein V_ATPase_I PF01496.19 gi|336252649|ref|YP_004595756.1| - 1.9 6.3 8.5 2.8 5.7 8.5 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family UPF0242 PF06785.11 gi|336252649|ref|YP_004595756.1| - 2.5 8.2 19.4 5.2 7.1 19.4 1.5 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus bZIP_1 PF00170.21 gi|336252649|ref|YP_004595756.1| - 2.8 8.1 19.3 1.4 9.1 1.0 2.6 1 1 1 2 2 2 0 bZIP transcription factor BRE1 PF08647.11 gi|336252649|ref|YP_004595756.1| - 3.3 7.8 18.0 14 5.8 7.8 2.5 1 1 1 2 2 2 0 BRE1 E3 ubiquitin ligase HeLo PF14479.6 gi|336252649|ref|YP_004595756.1| - 4.8 7.0 9.7 10 5.9 9.7 1.5 1 0 0 1 1 1 0 Prion-inhibition and propagation FlxA PF14282.6 gi|336252649|ref|YP_004595756.1| - 4.9 7.2 6.4 13 5.8 5.6 1.9 1 1 1 2 2 2 0 FlxA-like protein SlyX PF04102.12 gi|336252649|ref|YP_004595756.1| - 5.3 7.7 13.2 2.5 8.8 5.5 3.0 1 1 2 3 3 3 0 SlyX DASH_Spc19 PF08287.11 gi|336252649|ref|YP_004595756.1| - 5.3 6.9 18.5 14 5.5 18.5 1.8 1 0 0 1 1 1 0 Spc19 XhlA PF10779.9 gi|336252649|ref|YP_004595756.1| - 6 7.2 17.1 2.4 8.4 5.1 3.2 3 0 0 3 3 2 0 Haemolysin XhlA TRAF_BIRC3_bd PF16673.5 gi|336252649|ref|YP_004595756.1| - 6.1 6.7 18.0 0.76 9.6 4.2 3.1 2 0 0 2 2 2 0 TNF receptor-associated factor BIRC3 binding domain CorA PF01544.18 gi|336252649|ref|YP_004595756.1| - 6.5 6.0 8.8 19 4.5 8.7 1.7 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein Laminin_II PF06009.12 gi|336252649|ref|YP_004595756.1| - 6.5 6.8 9.2 9.1 6.3 4.3 2.5 1 1 1 2 2 2 0 Laminin Domain II Fib_alpha PF08702.10 gi|336252649|ref|YP_004595756.1| - 7.7 6.7 8.0 4.1 7.6 3.4 2.2 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family TMF_TATA_bd PF12325.8 gi|336252649|ref|YP_004595756.1| - 9.1 6.5 29.3 0.39 11.0 6.3 2.9 2 1 1 3 3 2 0 TATA element modulatory factor 1 TATA binding Tropomyosin_1 PF12718.7 gi|336252649|ref|YP_004595756.1| - 9.2 6.4 31.9 23 5.1 27.5 3.1 2 1 0 2 2 2 0 Tropomyosin like DUF5113 PF17140.4 gi|336252650|ref|YP_004595757.1| - 0.14 12.0 0.0 0.18 11.6 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5113) Aldo_ket_red PF00248.21 gi|336252651|ref|YP_004595758.1| - 3.9e-73 246.2 0.0 4.4e-73 246.0 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family RHH_5 PF07878.11 gi|336252651|ref|YP_004595758.1| - 0.016 15.1 0.1 0.039 13.8 0.1 1.7 1 0 0 1 1 1 0 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 Lactamase_B_2 PF12706.7 gi|336252652|ref|YP_004595759.1| - 6.1e-20 71.6 2.9 2.6e-17 63.0 2.9 2.2 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|336252652|ref|YP_004595759.1| - 9.7e-13 48.6 6.1 1.9e-11 44.3 1.1 2.2 1 1 1 2 2 2 2 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.6 gi|336252652|ref|YP_004595759.1| - 0.022 14.4 0.0 0.042 13.5 0.0 1.4 1 0 0 1 1 1 0 tRNase Z endonuclease Transglut_C PF00927.22 gi|336252653|ref|YP_004595760.1| - 0.14 12.3 0.2 0.6 10.3 0.0 2.1 2 0 0 2 2 2 0 Transglutaminase family, C-terminal ig like domain fn3_5 PF06280.12 gi|336252653|ref|YP_004595760.1| - 0.18 12.5 9.8 3.1 8.5 2.7 3.5 1 1 2 3 3 3 0 Fn3-like domain AAA PF00004.29 gi|336252654|ref|YP_004595761.1| - 7e-14 52.4 0.1 3.1e-13 50.3 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.6 gi|336252654|ref|YP_004595761.1| - 2.9e-12 46.7 0.0 5.3e-12 45.8 0.0 1.4 1 0 0 1 1 1 1 DNA polymerase III, delta subunit Rep_fac_C PF08542.11 gi|336252654|ref|YP_004595761.1| - 4e-11 43.2 0.3 9.6e-11 42.0 0.1 1.7 2 0 0 2 2 1 1 Replication factor C C-terminal domain AAA_22 PF13401.6 gi|336252654|ref|YP_004595761.1| - 9.5e-08 32.4 0.0 2.6e-07 31.0 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|336252654|ref|YP_004595761.1| - 2.8e-06 27.8 0.3 5.5e-05 23.6 0.0 2.7 2 1 0 2 2 2 1 AAA ATPase domain AAA_18 PF13238.6 gi|336252654|ref|YP_004595761.1| - 1.5e-05 25.5 0.0 4.8e-05 23.9 0.0 1.8 1 1 0 1 1 1 1 AAA domain Sigma54_activat PF00158.26 gi|336252654|ref|YP_004595761.1| - 1.6e-05 24.6 0.0 0.00054 19.7 0.0 2.6 3 0 0 3 3 3 1 Sigma-54 interaction domain Mg_chelatase PF01078.21 gi|336252654|ref|YP_004595761.1| - 0.0001 21.8 0.0 0.00017 21.0 0.0 1.3 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_5 PF07728.14 gi|336252654|ref|YP_004595761.1| - 0.00015 21.8 2.0 0.0014 18.6 0.4 2.8 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) NACHT PF05729.12 gi|336252654|ref|YP_004595761.1| - 0.00022 21.2 0.0 0.00064 19.7 0.0 1.9 1 1 0 1 1 1 1 NACHT domain AAA_19 PF13245.6 gi|336252654|ref|YP_004595761.1| - 0.00044 20.6 0.1 0.003 17.9 0.0 2.1 2 1 0 2 2 2 1 AAA domain AAA_11 PF13086.6 gi|336252654|ref|YP_004595761.1| - 0.00045 20.1 0.0 0.0012 18.7 0.0 1.6 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|336252654|ref|YP_004595761.1| - 0.0006 19.2 0.0 0.0033 16.7 0.0 2.0 2 0 0 2 2 2 1 Zeta toxin AAA_14 PF13173.6 gi|336252654|ref|YP_004595761.1| - 0.0007 19.6 0.0 0.0019 18.2 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|336252654|ref|YP_004595761.1| - 0.0008 19.2 0.0 0.0013 18.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain Sigma54_activ_2 PF14532.6 gi|336252654|ref|YP_004595761.1| - 0.0019 18.3 0.0 0.012 15.8 0.0 1.9 2 0 0 2 2 2 1 Sigma-54 interaction domain T2SSE PF00437.20 gi|336252654|ref|YP_004595761.1| - 0.0026 16.8 0.0 0.0062 15.6 0.0 1.6 1 0 0 1 1 1 1 Type II/IV secretion system protein His_Phos_1 PF00300.22 gi|336252654|ref|YP_004595761.1| - 0.0079 15.9 0.2 0.25 11.0 0.0 2.4 1 1 1 2 2 2 1 Histidine phosphatase superfamily (branch 1) Rad17 PF03215.15 gi|336252654|ref|YP_004595761.1| - 0.008 16.1 0.0 0.013 15.4 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain IstB_IS21 PF01695.17 gi|336252654|ref|YP_004595761.1| - 0.0094 15.7 0.0 0.026 14.3 0.0 1.7 2 0 0 2 2 1 1 IstB-like ATP binding protein AAA_2 PF07724.14 gi|336252654|ref|YP_004595761.1| - 0.0098 16.0 0.0 0.022 14.9 0.0 1.6 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) Bac_DnaA PF00308.18 gi|336252654|ref|YP_004595761.1| - 0.015 15.2 0.2 0.086 12.7 0.0 2.2 3 0 0 3 3 2 0 Bacterial dnaA protein AAA_33 PF13671.6 gi|336252654|ref|YP_004595761.1| - 0.015 15.4 0.0 0.03 14.5 0.0 1.6 1 1 0 1 1 1 0 AAA domain RuvB_N PF05496.12 gi|336252654|ref|YP_004595761.1| - 0.024 14.4 0.2 0.091 12.5 0.0 2.0 3 0 0 3 3 1 0 Holliday junction DNA helicase RuvB P-loop domain TIP49 PF06068.13 gi|336252654|ref|YP_004595761.1| - 0.046 12.9 0.0 0.073 12.3 0.0 1.2 1 0 0 1 1 1 0 TIP49 P-loop domain AAA_30 PF13604.6 gi|336252654|ref|YP_004595761.1| - 0.054 13.2 0.0 0.11 12.2 0.0 1.6 1 1 0 1 1 1 0 AAA domain Lipoprotein_16 PF03923.13 gi|336252654|ref|YP_004595761.1| - 0.061 13.0 0.0 6.9 6.3 0.0 2.6 2 0 0 2 2 2 0 Uncharacterized lipoprotein AAA_25 PF13481.6 gi|336252654|ref|YP_004595761.1| - 0.072 12.7 0.0 3.1 7.3 0.0 2.3 2 0 0 2 2 2 0 AAA domain Metal_resist PF13801.6 gi|336252654|ref|YP_004595761.1| - 0.075 13.2 0.3 0.075 13.2 0.3 2.9 3 0 0 3 3 3 0 Heavy-metal resistance DEAD PF00270.29 gi|336252654|ref|YP_004595761.1| - 0.091 12.5 0.2 6.3 6.5 0.0 2.3 1 1 0 2 2 2 0 DEAD/DEAH box helicase TsaE PF02367.17 gi|336252654|ref|YP_004595761.1| - 0.11 12.5 0.0 0.23 11.5 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_7 PF12775.7 gi|336252654|ref|YP_004595761.1| - 0.16 11.4 0.0 0.54 9.7 0.0 1.8 2 0 0 2 2 2 0 P-loop containing dynein motor region 4HBT PF03061.22 gi|336252655|ref|YP_004595762.1| - 4e-18 65.6 0.0 6.1e-18 64.9 0.0 1.3 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_2 PF13279.6 gi|336252655|ref|YP_004595762.1| - 0.15 12.6 0.0 0.18 12.3 0.0 1.2 1 0 0 1 1 1 0 Thioesterase-like superfamily TrmB PF01978.19 gi|336252656|ref|YP_004595763.1| - 9.2e-17 60.7 0.0 2.8e-16 59.2 0.0 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Regulator_TrmB PF11495.8 gi|336252656|ref|YP_004595763.1| - 5.9e-09 35.4 0.0 8.4e-09 34.9 0.0 1.3 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB HRDC PF00570.23 gi|336252656|ref|YP_004595763.1| - 0.0089 16.0 0.1 4.3 7.4 0.0 3.2 3 0 0 3 3 3 1 HRDC domain Radical_SAM PF04055.21 gi|336252656|ref|YP_004595763.1| - 0.0098 16.3 0.4 0.79 10.1 0.1 2.3 1 1 1 2 2 2 1 Radical SAM superfamily HTH_27 PF13463.6 gi|336252656|ref|YP_004595763.1| - 0.013 16.0 1.2 0.26 11.8 0.1 3.2 2 1 2 4 4 4 0 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|336252656|ref|YP_004595763.1| - 0.019 14.8 0.1 0.053 13.4 0.1 1.8 1 0 0 1 1 1 0 MarR family HTH_IclR PF09339.10 gi|336252656|ref|YP_004595763.1| - 0.042 13.7 0.2 2.8 7.8 0.0 2.7 2 0 0 2 2 2 0 IclR helix-turn-helix domain UPF0020 PF01170.18 gi|336252657|ref|YP_004595764.1| - 8.2e-21 74.6 0.1 6.3e-20 71.7 0.1 2.2 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_25 PF13649.6 gi|336252657|ref|YP_004595764.1| - 6.1e-06 26.9 0.0 1.5e-05 25.6 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain THUMP PF02926.17 gi|336252657|ref|YP_004595764.1| - 1.8e-05 24.8 0.0 8e-05 22.8 0.0 1.9 1 1 0 1 1 1 1 THUMP domain Methyltransf_11 PF08241.12 gi|336252657|ref|YP_004595764.1| - 0.00016 22.2 0.0 0.00043 20.9 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain AviRa PF11599.8 gi|336252657|ref|YP_004595764.1| - 0.00087 18.8 0.0 0.45 9.9 0.0 2.2 2 0 0 2 2 2 2 RRNA methyltransferase AviRa Methyltransf_23 PF13489.6 gi|336252657|ref|YP_004595764.1| - 0.033 14.0 0.0 0.4 10.5 0.0 2.3 2 1 0 2 2 2 0 Methyltransferase domain Methyltransf_15 PF09445.10 gi|336252657|ref|YP_004595764.1| - 0.16 11.5 0.0 0.24 10.9 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase N6_Mtase PF02384.16 gi|336252657|ref|YP_004595764.1| - 0.24 10.6 0.0 0.38 10.0 0.0 1.2 1 0 0 1 1 1 0 N-6 DNA Methylase TBP PF00352.21 gi|336252658|ref|YP_004595765.1| - 4.8e-58 193.1 0.0 5.1e-28 96.9 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) T4bSS_IcmS PF12608.8 gi|336252658|ref|YP_004595765.1| - 1.2e-05 25.5 0.0 0.01 16.1 0.0 2.2 2 0 0 2 2 2 2 Type IVb secretion, IcmS, effector-recruitment DUF3378 PF11858.8 gi|336252658|ref|YP_004595765.1| - 0.00025 21.1 0.0 0.69 10.1 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) Ribosomal_S30AE PF02482.19 gi|336252658|ref|YP_004595765.1| - 0.11 13.2 0.0 12 6.8 0.0 2.2 2 0 0 2 2 2 0 Sigma 54 modulation protein / S30EA ribosomal protein Ion_trans_2 PF07885.16 gi|336252659|ref|YP_004595766.1| - 4.3e-05 23.4 8.7 4.3e-05 23.4 8.7 1.8 2 0 0 2 2 2 1 Ion channel Cation_ATPase_C PF00689.21 gi|336252659|ref|YP_004595766.1| - 0.053 13.2 0.1 0.11 12.2 0.1 1.4 1 0 0 1 1 1 0 Cation transporting ATPase, C-terminus MarR PF01047.22 gi|336252660|ref|YP_004595767.1| - 3.2e-06 27.0 0.0 4.3e-06 26.6 0.0 1.2 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|336252660|ref|YP_004595767.1| - 6.3e-06 26.0 0.0 7.3e-06 25.8 0.0 1.2 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.19 gi|336252660|ref|YP_004595767.1| - 6.8e-05 23.0 0.0 0.00011 22.3 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_IclR PF09339.10 gi|336252660|ref|YP_004595767.1| - 0.0049 16.6 0.5 0.011 15.6 0.0 1.7 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_11 PF08279.12 gi|336252660|ref|YP_004595767.1| - 0.0062 16.5 0.0 0.0075 16.2 0.0 1.2 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.6 gi|336252660|ref|YP_004595767.1| - 0.064 12.8 0.0 0.091 12.3 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HisG PF01634.18 gi|336252662|ref|YP_004595769.1| - 2.7e-49 167.2 0.2 3.9e-49 166.7 0.2 1.2 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.11 gi|336252662|ref|YP_004595769.1| - 2.2e-25 88.6 0.1 5.2e-25 87.4 0.1 1.7 1 0 0 1 1 1 1 HisG, C-terminal domain NMT1 PF09084.11 gi|336252662|ref|YP_004595769.1| - 0.00027 21.0 0.0 0.0024 17.9 0.0 2.2 2 1 0 2 2 2 1 NMT1/THI5 like Phosphonate-bd PF12974.7 gi|336252662|ref|YP_004595769.1| - 0.016 14.8 0.1 0.058 13.0 0.0 2.0 2 0 0 2 2 2 0 ABC transporter, phosphonate, periplasmic substrate-binding protein LysR_substrate PF03466.20 gi|336252662|ref|YP_004595769.1| - 0.033 13.5 0.2 0.054 12.9 0.2 1.3 1 0 0 1 1 1 0 LysR substrate binding domain DUF1281 PF06924.11 gi|336252663|ref|YP_004595770.1| - 0.11 12.1 0.1 0.26 10.8 0.0 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF1281) E1-E2_ATPase PF00122.20 gi|336252664|ref|YP_004595771.1| - 1.9e-48 164.4 5.1 3.9e-48 163.4 1.3 2.5 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.26 gi|336252664|ref|YP_004595771.1| - 1.4e-43 149.7 6.1 2.7e-43 148.7 6.1 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|336252664|ref|YP_004595771.1| - 0.00011 22.1 0.0 0.0015 18.3 0.0 2.1 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|336252664|ref|YP_004595771.1| - 0.0022 18.4 1.2 0.0051 17.2 0.3 2.1 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase DUF1198 PF06711.11 gi|336252664|ref|YP_004595771.1| - 0.12 12.5 0.0 0.24 11.4 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1198) DUF2796 PF10986.8 gi|336252664|ref|YP_004595771.1| - 0.14 12.1 0.8 0.24 11.3 0.8 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2796) DUF1980 PF09323.10 gi|336252664|ref|YP_004595771.1| - 0.23 11.4 0.1 36 4.2 0.0 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF1980) ATPase PF06745.13 gi|336252665|ref|YP_004595772.1| - 2e-45 155.0 0.0 2.2e-45 154.8 0.0 1.0 1 0 0 1 1 1 1 KaiC GvpD PF07088.11 gi|336252665|ref|YP_004595772.1| - 3.9e-08 32.4 0.1 9.9e-07 27.7 0.1 2.9 1 1 0 1 1 1 1 GvpD gas vesicle protein DnaB_C PF03796.15 gi|336252665|ref|YP_004595772.1| - 8.6e-07 28.5 0.0 1.3e-06 28.0 0.0 1.2 1 0 0 1 1 1 1 DnaB-like helicase C terminal domain AAA_25 PF13481.6 gi|336252665|ref|YP_004595772.1| - 5.1e-06 26.2 0.0 1.1e-05 25.1 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|336252665|ref|YP_004595772.1| - 0.00044 20.4 0.0 0.0011 19.1 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|336252665|ref|YP_004595772.1| - 0.0017 18.6 0.0 0.0039 17.5 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|336252665|ref|YP_004595772.1| - 0.0018 18.7 0.3 0.016 15.7 0.3 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.6 gi|336252665|ref|YP_004595772.1| - 0.0024 17.9 0.0 0.012 15.7 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_24 PF13479.6 gi|336252665|ref|YP_004595772.1| - 0.0028 17.4 0.0 0.0065 16.2 0.0 1.6 1 1 1 2 2 2 1 AAA domain MEDS PF14417.6 gi|336252665|ref|YP_004595772.1| - 0.0041 17.0 0.0 0.0069 16.2 0.0 1.4 1 0 0 1 1 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain AAA_16 PF13191.6 gi|336252665|ref|YP_004595772.1| - 0.0043 17.5 0.0 0.0073 16.7 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain Rad51 PF08423.11 gi|336252665|ref|YP_004595772.1| - 0.0087 15.4 0.1 0.02 14.2 0.0 1.6 2 0 0 2 2 2 1 Rad51 ATP_bind_1 PF03029.17 gi|336252665|ref|YP_004595772.1| - 0.01 15.6 0.4 0.027 14.3 0.1 1.9 2 1 1 3 3 3 0 Conserved hypothetical ATP binding protein ATPase_2 PF01637.18 gi|336252665|ref|YP_004595772.1| - 0.011 15.7 0.0 0.016 15.2 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_18 PF13238.6 gi|336252665|ref|YP_004595772.1| - 0.015 15.9 0.1 0.022 15.3 0.1 1.6 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|336252665|ref|YP_004595772.1| - 0.039 13.9 0.0 0.065 13.2 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_30 PF13604.6 gi|336252665|ref|YP_004595772.1| - 0.041 13.6 0.0 0.087 12.5 0.0 1.7 1 1 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|336252665|ref|YP_004595772.1| - 0.043 12.9 0.0 0.069 12.2 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein RecA PF00154.21 gi|336252665|ref|YP_004595772.1| - 0.049 13.1 0.2 0.63 9.5 0.0 2.3 3 0 0 3 3 2 0 recA bacterial DNA recombination protein cobW PF02492.19 gi|336252665|ref|YP_004595772.1| - 0.051 13.2 0.1 0.13 11.8 0.0 1.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain DUF835 PF05763.12 gi|336252665|ref|YP_004595772.1| - 0.053 13.3 0.0 0.078 12.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF835) AAA_28 PF13521.6 gi|336252665|ref|YP_004595772.1| - 0.056 13.7 0.0 0.41 10.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.6 gi|336252665|ref|YP_004595772.1| - 0.091 13.2 0.2 0.19 12.2 0.2 1.5 1 0 0 1 1 1 0 AAA domain Viral_helicase1 PF01443.18 gi|336252665|ref|YP_004595772.1| - 0.098 12.4 0.0 0.23 11.2 0.0 1.6 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase NTPase_1 PF03266.15 gi|336252665|ref|YP_004595772.1| - 0.11 12.4 0.0 0.21 11.5 0.0 1.5 1 0 0 1 1 1 0 NTPase AAA_11 PF13086.6 gi|336252665|ref|YP_004595772.1| - 0.12 12.1 0.0 0.16 11.7 0.0 1.2 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|336252665|ref|YP_004595772.1| - 0.13 12.7 0.0 0.21 12.0 0.0 1.5 1 0 0 1 1 1 0 RNA helicase NB-ARC PF00931.22 gi|336252665|ref|YP_004595772.1| - 0.17 11.1 0.0 0.3 10.2 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain IstB_IS21 PF01695.17 gi|336252665|ref|YP_004595772.1| - 0.17 11.6 0.0 0.33 10.7 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein Zeta_toxin PF06414.12 gi|336252665|ref|YP_004595772.1| - 0.18 11.1 0.0 0.68 9.2 0.0 1.8 2 0 0 2 2 2 0 Zeta toxin DUF716 PF04819.12 gi|336252667|ref|YP_004595774.1| - 0.13 11.9 0.8 0.18 11.5 0.8 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF716) PalH PF08733.10 gi|336252667|ref|YP_004595774.1| - 1.2 8.1 3.2 1.5 7.7 3.2 1.1 1 0 0 1 1 1 0 PalH/RIM21 SpoIIM PF01944.17 gi|336252668|ref|YP_004595775.1| - 2.2e-26 92.7 17.7 2.2e-26 92.7 17.7 1.9 2 0 0 2 2 2 1 Stage II sporulation protein M Amidohydro_1 PF01979.20 gi|336252669|ref|YP_004595776.1| - 1.2e-64 218.9 3.6 1.4e-64 218.6 3.6 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|336252669|ref|YP_004595776.1| - 1.2e-24 87.7 17.1 1.8e-18 67.3 13.4 2.9 1 1 1 2 2 2 2 Amidohydrolase family A_deaminase PF00962.22 gi|336252669|ref|YP_004595776.1| - 0.00019 20.9 0.0 0.00039 19.8 0.0 1.5 1 0 0 1 1 1 1 Adenosine/AMP deaminase CYTH PF01928.21 gi|336252669|ref|YP_004595776.1| - 0.0028 17.6 0.0 0.0059 16.6 0.0 1.6 1 0 0 1 1 1 1 CYTH domain Invasin_D3 PF09134.10 gi|336252670|ref|YP_004595777.1| - 0.00078 19.7 14.3 0.0013 19.0 14.3 1.4 1 0 0 1 1 1 1 Invasin, domain 3 DUF824 PF05688.11 gi|336252670|ref|YP_004595777.1| - 0.0029 17.4 0.6 0.0085 15.9 0.6 1.8 1 0 0 1 1 1 1 Salmonella repeat of unknown function (DUF824) CarboxypepD_reg PF13620.6 gi|336252670|ref|YP_004595777.1| - 0.006 16.8 6.6 0.016 15.5 6.6 1.7 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain MG4 PF17789.1 gi|336252670|ref|YP_004595777.1| - 0.019 15.1 0.9 0.033 14.3 0.9 1.3 1 0 0 1 1 1 0 Macroglobulin domain MG4 YtkA PF13115.6 gi|336252670|ref|YP_004595777.1| - 0.2 12.3 2.4 0.34 11.6 1.6 1.8 1 1 0 1 1 1 0 YtkA-like DUF4179 PF13786.6 gi|336252670|ref|YP_004595777.1| - 0.69 10.4 3.6 0.63 10.5 1.9 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4179) AdoHcyase PF05221.17 gi|336252671|ref|YP_004595778.1| - 1.1e-51 175.8 0.0 6.1e-27 94.5 0.4 2.0 1 1 1 2 2 2 2 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.21 gi|336252671|ref|YP_004595778.1| - 7.5e-48 162.6 1.1 1.7e-47 161.5 0.4 1.8 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|336252671|ref|YP_004595778.1| - 6.4e-10 38.7 0.1 1.2e-09 37.8 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|336252671|ref|YP_004595778.1| - 4.9e-06 26.2 0.1 1.3e-05 24.9 0.1 1.7 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain TrkA_N PF02254.18 gi|336252671|ref|YP_004595778.1| - 0.015 15.5 0.1 0.035 14.3 0.1 1.6 1 0 0 1 1 1 0 TrkA-N domain Shikimate_DH PF01488.20 gi|336252671|ref|YP_004595778.1| - 0.019 15.0 0.0 0.038 14.1 0.0 1.5 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase MG2 PF01835.19 gi|336252672|ref|YP_004595779.1| - 0.082 13.4 0.0 0.72 10.3 0.0 2.1 1 1 0 2 2 2 0 MG2 domain PAS_4 PF08448.10 gi|336252673|ref|YP_004595780.1| - 6e-11 42.6 0.3 1.9e-10 40.9 0.3 1.8 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 gi|336252673|ref|YP_004595780.1| - 4.4e-09 36.5 0.0 7.9e-09 35.7 0.0 1.4 1 0 0 1 1 1 1 PAS domain PAS_3 PF08447.12 gi|336252673|ref|YP_004595780.1| - 0.0042 17.4 0.0 0.0069 16.7 0.0 1.3 1 0 0 1 1 1 1 PAS fold Response_reg PF00072.24 gi|336252673|ref|YP_004595780.1| - 0.074 13.2 0.0 0.18 11.9 0.0 1.7 2 0 0 2 2 2 0 Response regulator receiver domain OKR_DC_1_N PF03709.15 gi|336252673|ref|YP_004595780.1| - 0.11 12.7 0.0 0.23 11.7 0.0 1.5 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain PAS PF00989.25 gi|336252673|ref|YP_004595780.1| - 0.14 12.1 0.0 0.27 11.2 0.0 1.5 1 0 0 1 1 1 0 PAS fold HEAT_2 PF13646.6 gi|336252673|ref|YP_004595780.1| - 1.4 9.4 8.2 0.72 10.3 0.4 3.1 1 1 0 2 2 2 0 HEAT repeats HalOD1 PF18545.1 gi|336252674|ref|YP_004595781.1| - 2.3e-23 82.2 0.4 2.8e-23 82.0 0.4 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 PAS_3 PF08447.12 gi|336252675|ref|YP_004595782.1| - 3e-66 219.7 10.0 3.1e-20 72.3 0.1 7.1 7 0 0 7 7 7 6 PAS fold PAS_4 PF08448.10 gi|336252675|ref|YP_004595782.1| - 1.1e-53 180.1 32.0 7.9e-18 64.7 0.1 7.1 7 0 0 7 7 6 6 PAS fold PAS_9 PF13426.7 gi|336252675|ref|YP_004595782.1| - 6.3e-52 174.2 1.1 3.5e-13 49.7 0.0 6.5 6 0 0 6 6 6 6 PAS domain BAT PF15915.5 gi|336252675|ref|YP_004595782.1| - 1.4e-51 174.5 18.8 1.4e-51 174.5 18.8 3.9 3 0 0 3 3 2 1 GAF and HTH_10 associated domain PAS PF00989.25 gi|336252675|ref|YP_004595782.1| - 1.6e-46 157.0 4.1 1.2e-19 70.3 0.0 6.0 6 0 0 6 6 6 4 PAS fold PAS_8 PF13188.7 gi|336252675|ref|YP_004595782.1| - 5.5e-23 80.5 5.7 5.7e-10 39.0 0.1 4.9 4 0 0 4 4 4 3 PAS domain GAF_2 PF13185.6 gi|336252675|ref|YP_004595782.1| - 9.2e-23 81.1 15.2 2.9e-15 56.8 0.6 5.8 5 0 0 5 5 5 2 GAF domain HTH_10 PF04967.12 gi|336252675|ref|YP_004595782.1| - 2.4e-16 59.3 0.0 5.9e-16 58.0 0.0 1.7 1 0 0 1 1 1 1 HTH DNA binding domain GAF_3 PF13492.6 gi|336252675|ref|YP_004595782.1| - 3.8e-09 37.0 0.0 0.001 19.4 0.0 4.8 4 0 0 4 4 4 1 GAF domain GAF PF01590.26 gi|336252675|ref|YP_004595782.1| - 4e-08 34.0 0.0 0.082 13.5 0.0 4.6 4 0 0 4 4 4 2 GAF domain PAS_7 PF12860.7 gi|336252675|ref|YP_004595782.1| - 3.8e-06 27.1 8.9 1.6 8.9 0.1 7.8 6 2 0 6 6 6 1 PAS fold PAS_10 PF13596.6 gi|336252675|ref|YP_004595782.1| - 3.6e-05 24.3 0.0 0.0002 21.9 0.0 2.4 2 0 0 2 2 2 1 PAS domain PAS_11 PF14598.6 gi|336252675|ref|YP_004595782.1| - 7.5e-05 22.8 0.0 0.055 13.6 0.0 3.2 3 0 0 3 3 3 1 PAS domain dCache_1 PF02743.18 gi|336252675|ref|YP_004595782.1| - 0.00062 19.6 0.3 2.8 7.7 0.0 4.0 3 1 2 5 5 4 2 Cache domain Sigma70_r4 PF04545.16 gi|336252675|ref|YP_004595782.1| - 0.0013 18.2 0.2 0.0053 16.2 0.2 2.1 1 0 0 1 1 1 1 Sigma-70, region 4 DUF2111 PF09884.9 gi|336252675|ref|YP_004595782.1| - 0.019 15.0 0.0 0.051 13.6 0.0 1.7 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2111) Sigma70_ECF PF07638.11 gi|336252675|ref|YP_004595782.1| - 0.022 14.7 2.2 0.027 14.4 0.2 2.3 2 0 0 2 2 1 0 ECF sigma factor HTH_1 PF00126.27 gi|336252675|ref|YP_004595782.1| - 0.025 14.5 0.2 0.088 12.8 0.2 2.0 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Sigma70_r4_2 PF08281.12 gi|336252675|ref|YP_004595782.1| - 0.068 12.8 0.7 0.31 10.7 0.0 2.7 2 1 0 2 2 1 0 Sigma-70, region 4 HTH_5 PF01022.20 gi|336252675|ref|YP_004595782.1| - 0.14 12.0 0.0 0.38 10.6 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family DUF4051 PF13260.6 gi|336252675|ref|YP_004595782.1| - 0.2 11.4 1.2 0.52 10.1 1.2 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF4051) Trypan_PARP PF05887.11 gi|336252675|ref|YP_004595782.1| - 2.8 7.9 12.6 0.12 12.3 5.3 2.4 2 0 0 2 2 2 0 Procyclic acidic repetitive protein (PARP) CPBP PF02517.16 gi|336252676|ref|YP_004595783.1| - 1.8e-16 60.2 4.5 1.8e-16 60.2 4.5 2.7 2 1 0 2 2 2 1 CPBP intramembrane metalloprotease EI24 PF07264.11 gi|336252676|ref|YP_004595783.1| - 0.29 11.4 13.6 0.56 10.4 13.4 1.6 1 1 0 1 1 1 0 Etoposide-induced protein 2.4 (EI24) PDR_CDR PF06422.12 gi|336252676|ref|YP_004595783.1| - 0.46 10.4 0.1 0.46 10.4 0.1 2.2 2 1 0 2 2 2 0 CDR ABC transporter Hjc PF01870.18 gi|336252677|ref|YP_004595784.1| - 1e-30 105.6 0.0 1.4e-30 105.1 0.0 1.2 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) NHL PF01436.21 gi|336252677|ref|YP_004595784.1| - 0.15 12.2 0.0 0.31 11.1 0.0 1.5 1 0 0 1 1 1 0 NHL repeat SWIM PF04434.17 gi|336252679|ref|YP_004595786.1| - 0.00021 20.9 0.7 0.00034 20.2 0.0 1.7 2 0 0 2 2 2 1 SWIM zinc finger DUF3341 PF11821.8 gi|336252680|ref|YP_004595787.1| - 3.8e-05 23.4 0.3 4.2e-05 23.2 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3341) PQQ_2 PF13360.6 gi|336252682|ref|YP_004595789.1| - 1.4e-41 142.7 13.8 3.3e-21 76.0 3.7 3.1 1 1 1 2 2 2 2 PQQ-like domain PQQ_3 PF13570.6 gi|336252682|ref|YP_004595789.1| - 1.7e-41 139.7 36.0 2.4e-08 34.2 0.1 8.2 8 0 0 8 8 8 8 PQQ-like domain PQQ PF01011.21 gi|336252682|ref|YP_004595789.1| - 6.3e-22 76.4 14.1 5.3e-07 29.3 0.0 8.1 9 0 0 9 9 9 5 PQQ enzyme repeat ANAPC4_WD40 PF12894.7 gi|336252682|ref|YP_004595789.1| - 0.015 15.6 0.0 0.61 10.4 0.0 3.2 3 1 0 3 3 3 0 Anaphase-promoting complex subunit 4 WD40 domain Rad51 PF08423.11 gi|336252683|ref|YP_004595790.1| - 9.1e-75 251.2 0.1 8e-74 248.1 0.1 1.9 1 1 0 1 1 1 1 Rad51 HHH_5 PF14520.6 gi|336252683|ref|YP_004595790.1| - 2.4e-11 44.1 0.0 8.2e-11 42.3 0.0 2.0 2 0 0 2 2 2 1 Helix-hairpin-helix domain RecA PF00154.21 gi|336252683|ref|YP_004595790.1| - 3.2e-08 33.4 0.0 0.0069 15.9 0.0 2.2 1 1 1 2 2 2 2 recA bacterial DNA recombination protein HHH PF00633.23 gi|336252683|ref|YP_004595790.1| - 3.3e-07 29.8 1.9 0.0027 17.5 0.2 2.9 3 0 0 3 3 3 2 Helix-hairpin-helix motif HHH_2 PF12826.7 gi|336252683|ref|YP_004595790.1| - 1e-06 28.7 0.1 4e-06 26.8 0.0 2.1 2 0 0 2 2 1 1 Helix-hairpin-helix motif AAA_25 PF13481.6 gi|336252683|ref|YP_004595790.1| - 3e-06 26.9 0.1 6.3e-06 25.9 0.1 1.5 1 1 0 1 1 1 1 AAA domain Cdd1 PF11731.8 gi|336252683|ref|YP_004595790.1| - 3.4e-05 24.0 0.0 0.0001 22.4 0.0 1.8 1 0 0 1 1 1 1 Pathogenicity locus ATPase PF06745.13 gi|336252683|ref|YP_004595790.1| - 0.00029 20.3 0.3 0.0014 18.0 0.1 2.0 2 1 0 2 2 2 1 KaiC DNA_pol_lambd_f PF10391.9 gi|336252683|ref|YP_004595790.1| - 0.0004 20.1 0.0 0.0024 17.7 0.0 2.3 1 1 0 1 1 1 1 Fingers domain of DNA polymerase lambda HHH_3 PF12836.7 gi|336252683|ref|YP_004595790.1| - 0.0055 16.9 0.0 2.6 8.4 0.0 2.9 2 1 1 3 3 3 1 Helix-hairpin-helix motif DUF4332 PF14229.6 gi|336252683|ref|YP_004595790.1| - 0.0071 16.6 0.0 0.019 15.2 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4332) AAA_22 PF13401.6 gi|336252683|ref|YP_004595790.1| - 0.017 15.4 0.4 0.072 13.4 0.4 2.0 1 1 0 1 1 1 0 AAA domain IMS_HHH PF11798.8 gi|336252683|ref|YP_004595790.1| - 0.031 14.6 0.0 0.15 12.4 0.0 2.2 2 0 0 2 2 2 0 IMS family HHH motif BAF PF02961.14 gi|336252683|ref|YP_004595790.1| - 0.067 13.6 0.0 0.19 12.2 0.0 1.8 1 0 0 1 1 1 0 Barrier to autointegration factor DUF2520 PF10728.9 gi|336252683|ref|YP_004595790.1| - 0.11 12.3 0.6 0.34 10.7 0.4 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF2520) ATPase_2 PF01637.18 gi|336252683|ref|YP_004595790.1| - 0.11 12.5 0.0 0.16 11.9 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea NifU_N PF01592.16 gi|336252685|ref|YP_004595792.1| - 2.6e-25 89.0 0.1 3.3e-25 88.7 0.1 1.1 1 0 0 1 1 1 1 NifU-like N terminal domain SufE PF02657.15 gi|336252685|ref|YP_004595792.1| - 0.039 13.8 0.0 0.055 13.3 0.0 1.2 1 0 0 1 1 1 0 Fe-S metabolism associated domain HNOB PF07700.15 gi|336252686|ref|YP_004595793.1| - 2.5e-36 125.1 0.0 2.9e-36 124.9 0.0 1.0 1 0 0 1 1 1 1 Haem-NO-binding V4R PF02830.18 gi|336252686|ref|YP_004595793.1| - 5.4e-09 35.9 0.1 9.1e-09 35.2 0.1 1.4 1 0 0 1 1 1 1 V4R domain MetOD1 PF18546.1 gi|336252686|ref|YP_004595793.1| - 0.0018 18.3 0.0 0.0027 17.7 0.0 1.3 1 0 0 1 1 1 1 Metanogen output domain 1 HD PF01966.22 gi|336252688|ref|YP_004595795.1| - 5.5e-13 49.2 3.5 1.1e-12 48.3 3.5 1.4 1 0 0 1 1 1 1 HD domain DUF4202 PF13875.6 gi|336252688|ref|YP_004595795.1| - 0.074 13.0 0.0 0.15 11.9 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4202) DUF2817 PF10994.8 gi|336252688|ref|YP_004595795.1| - 0.15 11.4 0.0 0.21 10.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2817) HTH_20 PF12840.7 gi|336252689|ref|YP_004595796.1| - 0.061 13.4 0.1 9.4 6.4 0.1 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain Aminotran_5 PF00266.19 gi|336252690|ref|YP_004595797.1| - 3.7e-151 503.3 0.0 4.2e-151 503.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|336252690|ref|YP_004595797.1| - 3.4e-09 36.5 0.3 5.9e-09 35.7 0.3 1.5 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|336252690|ref|YP_004595797.1| - 5.8e-08 32.4 0.0 6.7e-08 32.1 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase SelA PF03841.13 gi|336252690|ref|YP_004595797.1| - 0.00018 20.6 0.1 0.00051 19.1 0.1 1.6 1 1 0 1 1 1 1 L-seryl-tRNA selenium transferase Cys_Met_Meta_PP PF01053.20 gi|336252690|ref|YP_004595797.1| - 0.0042 15.7 0.0 0.0095 14.5 0.0 1.6 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Lar_restr_allev PF14354.6 gi|336252691|ref|YP_004595798.1| - 0.0038 17.6 3.9 0.081 13.3 3.3 2.6 2 0 0 2 2 2 1 Restriction alleviation protein Lar Mut7-C PF01927.16 gi|336252691|ref|YP_004595798.1| - 0.037 14.1 0.4 0.072 13.2 0.4 1.5 1 0 0 1 1 1 0 Mut7-C RNAse domain ABC_tran PF00005.27 gi|336252692|ref|YP_004595799.1| - 8.4e-25 87.9 0.0 1.2e-24 87.4 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|336252692|ref|YP_004595799.1| - 7e-12 45.8 0.1 3.1e-08 33.8 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system BAT PF15915.5 gi|336252692|ref|YP_004595799.1| - 0.0018 18.2 4.4 0.0031 17.4 3.4 1.9 1 1 0 1 1 1 1 GAF and HTH_10 associated domain DUF4162 PF13732.6 gi|336252692|ref|YP_004595799.1| - 0.0019 18.8 0.0 0.006 17.3 0.0 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF4162) AAA_23 PF13476.6 gi|336252692|ref|YP_004595799.1| - 0.025 15.1 0.1 0.037 14.5 0.1 1.2 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|336252692|ref|YP_004595799.1| - 0.034 14.1 0.0 0.057 13.3 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_29 PF13555.6 gi|336252692|ref|YP_004595799.1| - 0.038 13.7 0.0 0.09 12.5 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|336252692|ref|YP_004595799.1| - 0.038 14.2 0.0 0.1 12.9 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_27 PF13514.6 gi|336252692|ref|YP_004595799.1| - 0.14 11.7 0.0 0.36 10.4 0.0 1.6 2 0 0 2 2 2 0 AAA domain ABC2_membrane_2 PF12679.7 gi|336252693|ref|YP_004595800.1| - 1.6e-42 145.8 10.0 1.8e-41 142.3 10.0 1.9 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|336252693|ref|YP_004595800.1| - 2.9e-10 40.4 11.3 3.7e-10 40.1 9.3 2.0 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|336252693|ref|YP_004595800.1| - 1.7e-06 27.4 9.8 1.7e-06 27.4 9.8 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|336252693|ref|YP_004595800.1| - 1e-05 25.1 11.2 1.7e-05 24.3 11.2 1.4 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_5 PF13346.6 gi|336252693|ref|YP_004595800.1| - 0.00032 20.3 8.3 0.001 18.6 8.3 1.8 1 1 0 1 1 1 1 ABC-2 family transporter protein DUF4564 PF15169.6 gi|336252693|ref|YP_004595800.1| - 0.092 12.5 0.4 0.092 12.5 0.4 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4564) DUF3464 PF11947.8 gi|336252693|ref|YP_004595800.1| - 4.1 7.1 6.4 10 5.9 6.4 1.6 1 0 0 1 1 1 0 Photosynthesis affected mutant 68 DUF424 PF04242.13 gi|336252694|ref|YP_004595801.1| - 1.6e-30 105.2 0.3 1.7e-30 105.1 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF424) TPR_1 PF00515.28 gi|336252695|ref|YP_004595802.1| - 7.1e-21 73.1 7.2 5e-05 22.9 0.0 5.8 6 0 0 6 6 6 5 Tetratricopeptide repeat TPR_2 PF07719.17 gi|336252695|ref|YP_004595802.1| - 6.3e-17 60.3 15.6 0.004 17.2 0.0 5.8 6 0 0 6 6 6 5 Tetratricopeptide repeat TPR_8 PF13181.6 gi|336252695|ref|YP_004595802.1| - 5.9e-14 51.0 4.0 0.014 15.5 0.3 5.3 5 0 0 5 5 5 3 Tetratricopeptide repeat TPR_16 PF13432.6 gi|336252695|ref|YP_004595802.1| - 1e-13 51.7 13.3 1.2e-06 29.1 0.4 3.9 3 1 1 4 4 4 3 Tetratricopeptide repeat TPR_12 PF13424.6 gi|336252695|ref|YP_004595802.1| - 1.2e-12 48.0 19.9 2.3e-09 37.4 4.8 4.1 3 1 0 3 3 3 2 Tetratricopeptide repeat TPR_7 PF13176.6 gi|336252695|ref|YP_004595802.1| - 1.4e-09 37.3 11.1 0.00058 19.7 0.1 4.8 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_17 PF13431.6 gi|336252695|ref|YP_004595802.1| - 4e-09 36.2 0.1 0.011 16.1 0.0 4.3 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_9 PF13371.6 gi|336252695|ref|YP_004595802.1| - 7.7e-08 32.4 11.5 0.0079 16.3 0.2 4.4 1 1 3 4 4 4 4 Tetratricopeptide repeat TPR_10 PF13374.6 gi|336252695|ref|YP_004595802.1| - 5.4e-07 29.3 20.9 0.004 17.0 0.7 5.2 5 0 0 5 5 5 3 Tetratricopeptide repeat TPR_14 PF13428.6 gi|336252695|ref|YP_004595802.1| - 1.2e-06 28.8 20.8 0.002 18.8 0.9 5.2 2 1 4 6 6 5 3 Tetratricopeptide repeat TPR_11 PF13414.6 gi|336252695|ref|YP_004595802.1| - 2.6e-06 27.0 3.4 0.18 11.5 0.0 4.7 2 1 3 5 5 5 2 TPR repeat TPR_19 PF14559.6 gi|336252695|ref|YP_004595802.1| - 3.2e-05 24.3 10.1 0.5 10.9 0.0 4.5 2 1 2 5 5 5 2 Tetratricopeptide repeat TPR_4 PF07721.14 gi|336252695|ref|YP_004595802.1| - 7.1e-05 23.1 16.3 0.013 16.1 1.8 5.7 6 0 0 6 6 5 2 Tetratricopeptide repeat NARP1 PF12569.8 gi|336252695|ref|YP_004595802.1| - 0.0003 19.8 0.2 0.00062 18.8 0.1 1.5 1 1 0 1 1 1 1 NMDA receptor-regulated protein 1 ANAPC3 PF12895.7 gi|336252695|ref|YP_004595802.1| - 0.00065 19.9 1.8 0.067 13.4 0.1 2.7 1 1 0 2 2 2 1 Anaphase-promoting complex, cyclosome, subunit 3 ANAPC5 PF12862.7 gi|336252695|ref|YP_004595802.1| - 0.0074 16.3 5.8 0.37 10.9 0.7 3.4 1 1 1 2 2 2 1 Anaphase-promoting complex subunit 5 TPR_6 PF13174.6 gi|336252695|ref|YP_004595802.1| - 0.04 14.6 5.4 27 5.7 0.1 4.6 5 0 0 5 5 4 0 Tetratricopeptide repeat LisH PF08513.11 gi|336252695|ref|YP_004595802.1| - 0.097 12.7 0.4 0.4 10.7 0.1 2.1 2 0 0 2 2 2 0 LisH SPOB_a PF14689.6 gi|336252695|ref|YP_004595802.1| - 0.12 12.1 1.3 14 5.5 0.0 2.7 2 0 0 2 2 2 0 Sensor_kinase_SpoOB-type, alpha-helical domain Acetyltransf_11 PF13720.6 gi|336252695|ref|YP_004595802.1| - 0.14 12.6 0.3 0.41 11.1 0.3 1.8 1 0 0 1 1 1 0 Udp N-acetylglucosamine O-acyltransferase; Domain 2 TPR_20 PF14561.6 gi|336252695|ref|YP_004595802.1| - 0.21 11.9 4.5 1.3 9.4 0.6 2.6 1 1 1 2 2 2 0 Tetratricopeptide repeat LigT_PEase PF02834.16 gi|336252696|ref|YP_004595803.1| - 4.6e-29 100.5 0.0 1.6e-15 57.0 0.0 2.1 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.6 gi|336252696|ref|YP_004595803.1| - 2.3e-20 73.0 0.1 2.6e-20 72.9 0.1 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.9 gi|336252696|ref|YP_004595803.1| - 1.7e-08 34.6 0.0 2.2e-08 34.3 0.0 1.2 1 0 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain HVSL PF09749.9 gi|336252696|ref|YP_004595803.1| - 0.0021 17.6 0.0 0.0026 17.3 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised conserved protein PLDc_N PF13396.6 gi|336252697|ref|YP_004595804.1| - 1.5e-07 31.2 5.1 1.5e-07 31.2 5.1 2.2 1 1 1 2 2 2 1 Phospholipase_D-nuclease N-terminal Wzy_C_2 PF11846.8 gi|336252697|ref|YP_004595804.1| - 0.57 10.1 5.7 1.2 9.1 5.6 1.5 1 1 0 1 1 1 0 Virulence factor membrane-bound polymerase, C-terminal Phage_holin_3_6 PF07332.11 gi|336252697|ref|YP_004595804.1| - 1.1 9.3 10.0 1.7 8.7 10.0 1.2 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III CcmD PF04995.14 gi|336252697|ref|YP_004595804.1| - 1.3 9.2 9.8 0.95 9.6 1.2 2.4 2 1 0 2 2 2 0 Heme exporter protein D (CcmD) DUF2207 PF09972.9 gi|336252697|ref|YP_004595804.1| - 4.7 5.9 5.1 5.5 5.6 5.1 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Ribosomal_L39 PF00832.20 gi|336252699|ref|YP_004595806.1| - 1.1e-20 72.9 7.1 1.3e-20 72.7 7.1 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein Ribosomal_L31e PF01198.19 gi|336252700|ref|YP_004595807.1| - 3e-08 33.8 0.1 3.8e-08 33.5 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L31e Rap1a PF18602.1 gi|336252700|ref|YP_004595807.1| - 0.16 12.3 0.0 14 6.1 0.0 2.2 2 0 0 2 2 2 0 Rap1a immunity proteins eIF-6 PF01912.18 gi|336252701|ref|YP_004595808.1| - 8e-75 250.6 0.3 9.4e-75 250.3 0.3 1.1 1 0 0 1 1 1 1 eIF-6 family ASCH PF04266.14 gi|336252703|ref|YP_004595810.1| - 0.0014 19.2 0.1 0.0023 18.5 0.1 1.3 1 1 0 1 1 1 1 ASCH domain Ribosomal_L18A PF01775.17 gi|336252704|ref|YP_004595811.1| - 1.2e-09 38.3 0.0 1.3e-09 38.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A YhzD PF14120.6 gi|336252704|ref|YP_004595811.1| - 0.033 14.3 0.2 0.042 13.9 0.2 1.2 1 0 0 1 1 1 0 YhzD-like protein Prefoldin PF02996.17 gi|336252705|ref|YP_004595812.1| - 1.7e-26 92.5 10.4 1.7e-26 92.5 10.4 2.0 1 1 1 2 2 2 2 Prefoldin subunit ZapB PF06005.12 gi|336252705|ref|YP_004595812.1| - 3.3e-07 30.6 28.1 0.00059 20.2 6.2 2.2 2 0 0 2 2 2 2 Cell division protein ZapB Prefoldin_2 PF01920.20 gi|336252705|ref|YP_004595812.1| - 7e-07 29.2 27.0 0.00046 20.1 7.1 2.6 1 1 0 2 2 2 2 Prefoldin subunit Spc7 PF08317.11 gi|336252705|ref|YP_004595812.1| - 3e-05 23.1 23.1 0.0014 17.5 7.5 2.1 2 0 0 2 2 2 2 Spc7 kinetochore protein Spc24 PF08286.11 gi|336252705|ref|YP_004595812.1| - 5.5e-05 23.4 16.4 0.0037 17.5 1.1 2.2 2 0 0 2 2 2 2 Spc24 subunit of Ndc80 NPV_P10 PF05531.12 gi|336252705|ref|YP_004595812.1| - 6.9e-05 23.2 21.1 0.0043 17.5 5.7 2.5 2 1 0 2 2 2 2 Nucleopolyhedrovirus P10 protein APG6_N PF17675.1 gi|336252705|ref|YP_004595812.1| - 9.9e-05 22.9 30.2 0.019 15.5 10.9 2.1 2 0 0 2 2 2 2 Apg6 coiled-coil region Ax_dynein_light PF10211.9 gi|336252705|ref|YP_004595812.1| - 0.00015 21.8 15.3 0.016 15.1 1.3 2.1 2 0 0 2 2 2 2 Axonemal dynein light chain TSC22 PF01166.18 gi|336252705|ref|YP_004595812.1| - 0.00024 21.3 4.8 0.00024 21.3 4.8 3.3 3 1 0 3 3 2 1 TSC-22/dip/bun family GAS PF13851.6 gi|336252705|ref|YP_004595812.1| - 0.00032 20.1 18.7 0.023 14.0 6.0 2.1 2 0 0 2 2 2 2 Growth-arrest specific micro-tubule binding YabA PF06156.13 gi|336252705|ref|YP_004595812.1| - 0.00035 21.2 16.0 0.024 15.2 1.9 2.2 2 0 0 2 2 2 2 Initiation control protein YabA DUF4337 PF14235.6 gi|336252705|ref|YP_004595812.1| - 0.00054 20.1 16.5 0.0065 16.6 5.7 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4337) DUF4618 PF15397.6 gi|336252705|ref|YP_004595812.1| - 0.00068 19.1 16.4 0.054 12.9 2.8 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF4618) DUF3287 PF11690.8 gi|336252705|ref|YP_004595812.1| - 0.00079 19.1 1.0 0.72 9.6 0.0 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF3287) DUF1664 PF07889.12 gi|336252705|ref|YP_004595812.1| - 0.0008 19.4 14.9 0.04 14.0 3.1 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF1664) CENP-F_leu_zip PF10473.9 gi|336252705|ref|YP_004595812.1| - 0.00088 19.3 21.6 0.067 13.2 6.2 2.2 2 0 0 2 2 2 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF3450 PF11932.8 gi|336252705|ref|YP_004595812.1| - 0.001 18.5 24.5 0.017 14.4 8.4 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF3450) SlyX PF04102.12 gi|336252705|ref|YP_004595812.1| - 0.0011 19.5 32.9 0.27 11.9 15.2 3.1 3 0 0 3 3 3 2 SlyX DUF5082 PF16888.5 gi|336252705|ref|YP_004595812.1| - 0.0018 18.6 22.5 0.012 15.9 5.8 2.5 2 1 0 2 2 2 1 Domain of unknown function (DUF5082) MIS13 PF08202.11 gi|336252705|ref|YP_004595812.1| - 0.0018 17.6 9.0 0.0021 17.4 9.0 1.1 1 0 0 1 1 1 1 Mis12-Mtw1 protein family LRRFIP PF09738.9 gi|336252705|ref|YP_004595812.1| - 0.0019 17.8 16.7 0.094 12.2 4.9 2.1 2 0 0 2 2 2 2 LRRFIP family DUF4795 PF16043.5 gi|336252705|ref|YP_004595812.1| - 0.0019 17.8 15.0 0.12 11.9 3.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF4795) Jnk-SapK_ap_N PF09744.9 gi|336252705|ref|YP_004595812.1| - 0.0024 18.1 21.4 0.0072 16.6 6.5 2.1 2 0 0 2 2 2 1 JNK_SAPK-associated protein-1 BLOC1_2 PF10046.9 gi|336252705|ref|YP_004595812.1| - 0.0025 18.1 24.2 0.085 13.2 9.0 2.7 2 1 1 3 3 2 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF812 PF05667.11 gi|336252705|ref|YP_004595812.1| - 0.0027 16.7 24.0 0.082 11.8 9.7 2.0 2 0 0 2 2 2 2 Protein of unknown function (DUF812) DASH_Spc19 PF08287.11 gi|336252705|ref|YP_004595812.1| - 0.0028 17.6 12.8 0.092 12.6 5.4 2.2 2 0 0 2 2 2 2 Spc19 DUF4201 PF13870.6 gi|336252705|ref|YP_004595812.1| - 0.0028 17.4 15.0 0.033 13.9 2.8 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4201) DUF4349 PF14257.6 gi|336252705|ref|YP_004595812.1| - 0.0031 17.0 25.2 0.0067 15.9 10.6 2.1 1 1 1 2 2 2 1 Domain of unknown function (DUF4349) Laminin_II PF06009.12 gi|336252705|ref|YP_004595812.1| - 0.0032 17.5 12.5 0.11 12.5 3.3 2.2 2 0 0 2 2 2 2 Laminin Domain II Tropomyosin_1 PF12718.7 gi|336252705|ref|YP_004595812.1| - 0.0032 17.6 22.8 0.022 14.9 6.8 2.2 2 0 0 2 2 2 1 Tropomyosin like Synaptobrevin PF00957.21 gi|336252705|ref|YP_004595812.1| - 0.0039 16.9 16.3 0.01 15.6 4.1 2.3 2 0 0 2 2 2 1 Synaptobrevin MscS_porin PF12795.7 gi|336252705|ref|YP_004595812.1| - 0.0044 16.6 29.0 0.037 13.6 10.6 2.1 2 0 0 2 2 2 2 Mechanosensitive ion channel porin domain SKA2 PF16740.5 gi|336252705|ref|YP_004595812.1| - 0.0048 16.7 20.6 0.0059 16.4 3.7 2.3 2 1 0 2 2 2 1 Spindle and kinetochore-associated protein 2 Sec34 PF04136.15 gi|336252705|ref|YP_004595812.1| - 0.0052 16.7 17.5 0.071 13.0 5.6 2.2 2 0 0 2 2 2 2 Sec34-like family FlaC_arch PF05377.11 gi|336252705|ref|YP_004595812.1| - 0.0053 17.1 18.2 0.66 10.4 5.9 3.7 3 2 0 3 3 3 1 Flagella accessory protein C (FlaC) DUF4407 PF14362.6 gi|336252705|ref|YP_004595812.1| - 0.0055 16.1 20.0 0.055 12.8 19.7 1.9 1 1 0 1 1 1 1 Domain of unknown function (DUF4407) Fib_alpha PF08702.10 gi|336252705|ref|YP_004595812.1| - 0.0055 16.9 16.2 0.086 13.0 1.4 2.2 1 1 0 2 2 2 1 Fibrinogen alpha/beta chain family Uds1 PF15456.6 gi|336252705|ref|YP_004595812.1| - 0.0073 16.5 11.4 0.021 15.0 11.4 2.0 1 1 0 1 1 1 1 Up-regulated During Septation AAA_13 PF13166.6 gi|336252705|ref|YP_004595812.1| - 0.0077 14.9 19.7 0.061 12.0 5.7 2.0 2 0 0 2 2 2 2 AAA domain ATG16 PF08614.11 gi|336252705|ref|YP_004595812.1| - 0.0077 16.5 19.7 0.16 12.2 6.7 2.1 2 0 0 2 2 2 2 Autophagy protein 16 (ATG16) GPS2_interact PF15784.5 gi|336252705|ref|YP_004595812.1| - 0.0081 16.6 5.7 0.0081 16.6 5.7 2.1 2 0 0 2 2 2 1 G-protein pathway suppressor 2-interacting domain Tektin PF03148.14 gi|336252705|ref|YP_004595812.1| - 0.0083 14.9 18.4 0.02 13.6 3.2 2.2 2 0 0 2 2 2 1 Tektin family DASH_Dam1 PF08653.10 gi|336252705|ref|YP_004595812.1| - 0.0084 15.9 9.9 0.082 12.7 1.1 3.2 3 1 0 3 3 2 1 DASH complex subunit Dam1 HAUS-augmin3 PF14932.6 gi|336252705|ref|YP_004595812.1| - 0.0093 15.6 19.3 0.2 11.2 6.1 2.1 2 0 0 2 2 2 2 HAUS augmin-like complex subunit 3 Nmad5 PF18757.1 gi|336252705|ref|YP_004595812.1| - 0.011 16.0 4.2 0.019 15.2 4.2 1.5 1 1 0 1 1 1 0 Nucleotide modification associated domain 5 Vps51 PF08700.11 gi|336252705|ref|YP_004595812.1| - 0.011 15.8 8.6 0.13 12.3 1.1 2.9 2 0 0 2 2 2 0 Vps51/Vps67 Muted PF14942.6 gi|336252705|ref|YP_004595812.1| - 0.012 16.0 16.6 0.32 11.3 4.5 2.1 2 0 0 2 2 2 0 Organelle biogenesis, Muted-like protein Not3 PF04065.15 gi|336252705|ref|YP_004595812.1| - 0.012 15.0 15.2 0.076 12.4 3.9 2.1 2 0 0 2 2 2 0 Not1 N-terminal domain, CCR4-Not complex component DHR10 PF18595.1 gi|336252705|ref|YP_004595812.1| - 0.013 15.5 27.2 0.086 12.9 9.3 2.2 2 0 0 2 2 2 0 Designed helical repeat protein 10 domain PI3K_P85_iSH2 PF16454.5 gi|336252705|ref|YP_004595812.1| - 0.019 14.6 15.7 0.36 10.4 3.6 2.1 2 0 0 2 2 2 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain GCN5L1 PF06320.13 gi|336252705|ref|YP_004595812.1| - 0.02 15.0 4.8 0.02 15.0 4.8 2.2 2 0 0 2 2 2 0 GCN5-like protein 1 (GCN5L1) Cob_adeno_trans PF01923.18 gi|336252705|ref|YP_004595812.1| - 0.022 14.9 13.3 0.027 14.6 1.6 2.2 1 1 1 2 2 2 0 Cobalamin adenosyltransferase Syntaxin PF00804.25 gi|336252705|ref|YP_004595812.1| - 0.023 14.4 15.1 0.037 13.7 3.0 2.1 1 1 1 2 2 2 0 Syntaxin Mod_r PF07200.13 gi|336252705|ref|YP_004595812.1| - 0.023 14.8 19.4 0.24 11.5 5.4 2.1 2 0 0 2 2 2 0 Modifier of rudimentary (Mod(r)) protein DivIC PF04977.15 gi|336252705|ref|YP_004595812.1| - 0.024 14.4 30.5 0.027 14.2 9.5 3.2 2 1 1 3 3 3 0 Septum formation initiator SAS4 PF15460.6 gi|336252705|ref|YP_004595812.1| - 0.026 14.6 3.9 0.026 14.6 3.9 2.7 2 2 0 2 2 2 0 Something about silencing, SAS, complex subunit 4 SHE3 PF17078.5 gi|336252705|ref|YP_004595812.1| - 0.033 13.9 13.7 0.16 11.7 2.0 2.1 2 0 0 2 2 2 0 SWI5-dependent HO expression protein 3 UPF0242 PF06785.11 gi|336252705|ref|YP_004595812.1| - 0.035 14.2 24.0 0.032 14.3 7.8 2.1 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus TolA_bind_tri PF16331.5 gi|336252705|ref|YP_004595812.1| - 0.035 14.2 10.8 0.035 14.2 10.8 3.2 2 1 0 2 2 1 0 TolA binding protein trimerisation DUF4988 PF16378.5 gi|336252705|ref|YP_004595812.1| - 0.037 13.7 10.0 0.47 10.1 1.1 2.4 1 1 0 2 2 2 0 Domain of unknown function CdvA PF18822.1 gi|336252705|ref|YP_004595812.1| - 0.038 13.8 17.6 0.086 12.7 2.9 3.1 2 2 0 2 2 2 0 CdvA-like coiled-coil domain RPW8 PF05659.11 gi|336252705|ref|YP_004595812.1| - 0.039 13.6 6.9 0.92 9.2 0.7 2.4 2 1 0 2 2 2 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 Baculo_PEP_C PF04513.12 gi|336252705|ref|YP_004595812.1| - 0.047 13.7 18.0 0.34 11.0 5.3 2.4 1 1 2 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus FapA PF03961.13 gi|336252705|ref|YP_004595812.1| - 0.047 12.3 16.3 0.12 11.0 3.5 2.0 1 1 0 2 2 2 0 Flagellar Assembly Protein A IFT57 PF10498.9 gi|336252705|ref|YP_004595812.1| - 0.047 12.6 19.1 0.061 12.3 6.5 2.1 2 0 0 2 2 2 0 Intra-flagellar transport protein 57 Allexi_40kDa PF05549.11 gi|336252705|ref|YP_004595812.1| - 0.049 13.1 5.7 0.9 9.0 0.4 2.0 2 0 0 2 2 2 0 Allexivirus 40kDa protein MtrB PF05440.12 gi|336252705|ref|YP_004595812.1| - 0.049 14.0 3.0 2.4 8.6 0.5 2.4 2 0 0 2 2 2 0 Tetrahydromethanopterin S-methyltransferase subunit B XhlA PF10779.9 gi|336252705|ref|YP_004595812.1| - 0.05 13.8 2.7 0.05 13.8 2.7 2.8 2 1 1 3 3 2 0 Haemolysin XhlA PRTP PF01366.18 gi|336252705|ref|YP_004595812.1| - 0.059 11.4 6.5 0.072 11.1 6.5 1.1 1 0 0 1 1 1 0 Herpesvirus processing and transport protein V_ATPase_I PF01496.19 gi|336252705|ref|YP_004595812.1| - 0.066 11.1 15.5 0.13 10.2 3.5 2.0 2 0 0 2 2 2 0 V-type ATPase 116kDa subunit family HBM PF16591.5 gi|336252705|ref|YP_004595812.1| - 0.068 12.6 17.6 0.35 10.3 3.2 2.2 2 0 0 2 2 2 0 Helical bimodular sensor domain Dor1 PF04124.12 gi|336252705|ref|YP_004595812.1| - 0.069 11.8 11.8 0.22 10.2 1.5 2.1 2 0 0 2 2 2 0 Dor1-like family kleA_kleC PF17383.2 gi|336252705|ref|YP_004595812.1| - 0.071 13.4 11.8 0.12 12.7 2.7 2.5 2 1 0 2 2 2 0 Uncharacterized KorC regulated protein A Dynamitin PF04912.14 gi|336252705|ref|YP_004595812.1| - 0.076 12.3 18.2 0.25 10.6 3.9 2.0 2 0 0 2 2 2 0 Dynamitin Cytochrom_C_2 PF01322.20 gi|336252705|ref|YP_004595812.1| - 0.098 13.5 12.5 0.074 13.9 4.3 2.1 1 1 1 2 2 2 0 Cytochrome C' ERM PF00769.19 gi|336252705|ref|YP_004595812.1| - 0.1 12.4 26.7 0.084 12.7 9.3 2.1 2 0 0 2 2 2 0 Ezrin/radixin/moesin family MAD PF05557.13 gi|336252705|ref|YP_004595812.1| - 0.12 10.8 20.5 0.054 11.8 5.4 2.0 2 0 0 2 2 2 0 Mitotic checkpoint protein DUF4515 PF14988.6 gi|336252705|ref|YP_004595812.1| - 0.12 12.2 23.4 0.1 12.4 4.5 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4515) Golgin_A5 PF09787.9 gi|336252705|ref|YP_004595812.1| - 0.12 11.8 24.8 0.1 12.1 9.6 2.0 2 0 0 2 2 2 0 Golgin subfamily A member 5 MCU PF04678.13 gi|336252705|ref|YP_004595812.1| - 0.12 12.4 15.2 0.84 9.7 2.9 2.1 1 1 1 2 2 2 0 Mitochondrial calcium uniporter FbpA PF05833.11 gi|336252705|ref|YP_004595812.1| - 0.13 11.0 17.6 0.32 9.7 5.2 2.1 2 0 0 2 2 2 0 Fibronectin-binding protein A N-terminus (FbpA) DUF1465 PF07323.12 gi|336252705|ref|YP_004595812.1| - 0.15 11.9 9.4 0.86 9.4 1.7 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1465) ORF6C PF10552.9 gi|336252705|ref|YP_004595812.1| - 0.15 12.2 15.1 0.33 11.0 3.7 2.4 2 0 0 2 2 2 0 ORF6C domain Occludin_ELL PF07303.13 gi|336252705|ref|YP_004595812.1| - 0.15 12.8 15.2 0.84 10.4 1.9 2.5 2 1 0 2 2 2 0 Occludin homology domain T3SSipB PF16535.5 gi|336252705|ref|YP_004595812.1| - 0.15 12.5 19.9 1.1 9.7 3.5 2.1 2 0 0 2 2 2 0 Type III cell invasion protein SipB Atg14 PF10186.9 gi|336252705|ref|YP_004595812.1| - 0.16 11.0 12.7 0.56 9.2 3.2 2.0 2 0 0 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 Cas_DxTHG PF09455.10 gi|336252705|ref|YP_004595812.1| - 0.17 11.5 2.0 0.22 11.1 2.0 1.1 1 0 0 1 1 1 0 CRISPR-associated (Cas) DxTHG family Sipho_Gp157 PF05565.11 gi|336252705|ref|YP_004595812.1| - 0.17 11.9 18.9 0.5 10.4 7.6 2.2 2 0 0 2 2 2 0 Siphovirus Gp157 YkyA PF10368.9 gi|336252705|ref|YP_004595812.1| - 0.17 11.6 21.8 0.47 10.1 6.5 2.3 2 0 0 2 2 2 0 Putative cell-wall binding lipoprotein DUF4200 PF13863.6 gi|336252705|ref|YP_004595812.1| - 0.17 12.3 21.8 1.5 9.3 6.7 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4200) TFR_dimer PF04253.15 gi|336252705|ref|YP_004595812.1| - 0.17 12.0 6.2 5.8 7.0 1.7 2.5 2 1 0 2 2 2 0 Transferrin receptor-like dimerisation domain TPR_MLP1_2 PF07926.12 gi|336252705|ref|YP_004595812.1| - 0.18 11.9 28.0 1.7 8.7 9.1 2.5 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein ADIP PF11559.8 gi|336252705|ref|YP_004595812.1| - 0.18 11.9 20.2 0.51 10.4 6.1 2.2 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding Cluap1 PF10234.9 gi|336252705|ref|YP_004595812.1| - 0.19 11.1 16.6 0.32 10.4 4.5 2.1 2 0 0 2 2 2 0 Clusterin-associated protein-1 TACC_C PF05010.14 gi|336252705|ref|YP_004595812.1| - 0.19 11.5 19.2 0.43 10.3 4.8 2.1 2 0 0 2 2 2 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal COG6 PF06419.11 gi|336252705|ref|YP_004595812.1| - 0.2 9.8 15.4 0.34 9.1 4.2 2.0 2 0 0 2 2 2 0 Conserved oligomeric complex COG6 DUF2353 PF09789.9 gi|336252705|ref|YP_004595812.1| - 0.21 10.9 17.0 0.48 9.7 17.0 1.5 1 1 0 1 1 1 0 Uncharacterized coiled-coil protein (DUF2353) Csm1_N PF18504.1 gi|336252705|ref|YP_004595812.1| - 0.23 11.8 24.9 0.99 9.8 8.2 3.0 3 1 0 3 3 2 0 Csm1 N-terminal domain FliJ PF02050.16 gi|336252705|ref|YP_004595812.1| - 0.23 11.7 29.2 0.075 13.3 8.2 2.3 2 1 0 2 2 2 0 Flagellar FliJ protein Sec8_exocyst PF04048.14 gi|336252705|ref|YP_004595812.1| - 0.24 11.3 10.9 0.18 11.7 3.2 2.2 2 0 0 2 2 2 0 Sec8 exocyst complex component specific domain AAA_lid_9 PF17871.1 gi|336252705|ref|YP_004595812.1| - 0.25 11.3 15.9 0.2 11.6 4.9 2.3 2 0 0 2 2 2 0 AAA lid domain Tmemb_cc2 PF10267.9 gi|336252705|ref|YP_004595812.1| - 0.25 10.4 17.3 0.13 11.4 5.2 2.0 2 0 0 2 2 2 0 Predicted transmembrane and coiled-coil 2 protein YlqD PF11068.8 gi|336252705|ref|YP_004595812.1| - 0.27 11.6 28.6 0.88 9.9 11.1 2.4 2 0 0 2 2 2 0 YlqD protein JIP_LZII PF16471.5 gi|336252705|ref|YP_004595812.1| - 0.27 11.4 17.4 0.54 10.5 3.9 2.6 2 0 0 2 2 2 0 JNK-interacting protein leucine zipper II DUF2730 PF10805.8 gi|336252705|ref|YP_004595812.1| - 0.28 11.3 10.1 2 8.5 2.2 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2730) AAA_23 PF13476.6 gi|336252705|ref|YP_004595812.1| - 0.28 11.7 23.3 0.063 13.8 4.5 2.1 2 0 0 2 2 2 0 AAA domain Med14 PF08638.11 gi|336252705|ref|YP_004595812.1| - 0.28 10.6 3.8 0.17 11.3 0.1 2.0 1 1 1 2 2 2 0 Mediator complex subunit MED14 TLE_N PF03920.15 gi|336252705|ref|YP_004595812.1| - 0.29 11.2 15.5 0.087 12.9 3.7 2.3 2 0 0 2 2 2 0 Groucho/TLE N-terminal Q-rich domain THOC7 PF05615.13 gi|336252705|ref|YP_004595812.1| - 0.3 11.4 20.9 0.26 11.6 4.3 2.7 2 1 0 2 2 2 0 Tho complex subunit 7 Seryl_tRNA_N PF02403.22 gi|336252705|ref|YP_004595812.1| - 0.3 11.3 19.0 0.37 11.1 3.9 2.5 2 1 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain DUF948 PF06103.11 gi|336252705|ref|YP_004595812.1| - 0.31 11.3 15.3 0.64 10.3 3.2 2.5 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF948) DivIVA PF05103.13 gi|336252705|ref|YP_004595812.1| - 0.31 11.1 21.5 0.52 10.4 6.3 2.2 2 0 0 2 2 2 0 DivIVA protein FliD_C PF07195.12 gi|336252705|ref|YP_004595812.1| - 0.33 10.3 17.0 0.29 10.5 7.9 2.4 2 1 0 2 2 2 0 Flagellar hook-associated protein 2 C-terminus TMF_TATA_bd PF12325.8 gi|336252705|ref|YP_004595812.1| - 0.34 11.1 24.8 0.45 10.7 7.1 2.3 2 1 0 2 2 2 0 TATA element modulatory factor 1 TATA binding Spectrin PF00435.21 gi|336252705|ref|YP_004595812.1| - 0.35 11.4 22.1 0.93 10.0 6.9 2.3 2 0 0 2 2 2 0 Spectrin repeat EzrA PF06160.12 gi|336252705|ref|YP_004595812.1| - 0.4 8.8 21.2 0.87 7.7 5.6 2.1 2 0 0 2 2 2 0 Septation ring formation regulator, EzrA End3 PF12761.7 gi|336252705|ref|YP_004595812.1| - 0.44 10.7 14.4 1.9 8.6 2.7 2.3 2 0 0 2 2 2 0 Actin cytoskeleton-regulatory complex protein END3 LMBR1 PF04791.16 gi|336252705|ref|YP_004595812.1| - 0.47 9.3 5.6 0.59 9.0 5.6 1.1 1 0 0 1 1 1 0 LMBR1-like membrane protein RmuC PF02646.16 gi|336252705|ref|YP_004595812.1| - 0.51 9.4 19.0 1.6 7.8 7.1 2.1 2 0 0 2 2 2 0 RmuC family Hemerythrin PF01814.23 gi|336252705|ref|YP_004595812.1| - 0.56 10.8 8.2 2.1e+02 2.5 8.2 2.5 1 1 0 1 1 1 0 Hemerythrin HHE cation binding domain HOOK PF05622.12 gi|336252705|ref|YP_004595812.1| - 0.56 8.3 26.9 1.2e+02 0.6 26.9 2.0 1 1 0 1 1 1 0 HOOK protein Phage_GP20 PF06810.11 gi|336252705|ref|YP_004595812.1| - 0.57 10.0 27.4 2.8 7.8 12.4 2.7 1 1 2 3 3 3 0 Phage minor structural protein GP20 FH2 PF02181.23 gi|336252705|ref|YP_004595812.1| - 0.6 9.2 11.5 0.86 8.6 2.5 2.1 2 0 0 2 2 2 0 Formin Homology 2 Domain Plk4_PB2 PF18409.1 gi|336252705|ref|YP_004595812.1| - 0.66 10.7 6.2 6.3 7.5 0.7 2.1 2 0 0 2 2 2 0 Polo-like Kinase 4 Polo Box 2 ISG65-75 PF11727.8 gi|336252705|ref|YP_004595812.1| - 0.66 9.2 9.4 0.56 9.4 2.2 2.0 2 0 0 2 2 2 0 Invariant surface glycoprotein SKA1 PF07160.12 gi|336252705|ref|YP_004595812.1| - 0.68 9.7 14.7 2.2 8.1 4.7 2.1 2 0 0 2 2 2 0 Spindle and kinetochore-associated protein 1 GrpE PF01025.19 gi|336252705|ref|YP_004595812.1| - 0.7 9.5 21.1 2.5 7.8 8.2 2.2 2 0 0 2 2 2 0 GrpE Acyl-CoA_dh_C PF12806.7 gi|336252705|ref|YP_004595812.1| - 0.7 10.1 9.7 6 7.1 0.4 2.3 1 1 1 2 2 2 0 Acetyl-CoA dehydrogenase C-terminal like FlxA PF14282.6 gi|336252705|ref|YP_004595812.1| - 0.74 9.8 44.6 0.6 10.1 14.7 2.8 2 1 0 2 2 2 0 FlxA-like protein T2SSM PF04612.12 gi|336252705|ref|YP_004595812.1| - 0.77 9.8 15.9 1.2 9.2 2.0 2.2 2 0 0 2 2 2 0 Type II secretion system (T2SS), protein M HemX PF04375.14 gi|336252705|ref|YP_004595812.1| - 0.84 8.9 31.0 1.1 8.5 11.3 2.1 1 1 1 2 2 2 0 HemX, putative uroporphyrinogen-III C-methyltransferase DUF4763 PF15960.5 gi|336252705|ref|YP_004595812.1| - 0.89 8.8 21.3 0.58 9.4 4.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4763) Prominin PF05478.11 gi|336252705|ref|YP_004595812.1| - 0.9 7.4 14.0 1 7.2 3.2 1.8 1 1 0 2 2 2 0 Prominin GIT_CC PF16559.5 gi|336252705|ref|YP_004595812.1| - 0.97 9.3 23.5 0.36 10.7 9.2 2.3 2 0 0 2 2 2 0 GIT coiled-coil Rho guanine nucleotide exchange factor DUF4446 PF14584.6 gi|336252705|ref|YP_004595812.1| - 0.97 9.4 14.0 2.9 7.8 2.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4446) NBD94 PF16830.5 gi|336252705|ref|YP_004595812.1| - 1 9.8 10.6 2.3 8.7 0.6 2.6 3 0 0 3 3 2 0 Nucleotide-Binding Domain 94 of RH Fzo_mitofusin PF04799.13 gi|336252705|ref|YP_004595812.1| - 1.1 8.8 14.9 1.2 8.7 2.7 2.2 2 0 0 2 2 2 0 fzo-like conserved region Vps5 PF09325.10 gi|336252705|ref|YP_004595812.1| - 1.1 8.8 14.3 9.9 5.6 14.3 2.0 1 1 0 1 1 1 0 Vps5 C terminal like CC2-LZ PF16516.5 gi|336252705|ref|YP_004595812.1| - 1.1 9.7 21.8 0.5 10.8 7.1 2.4 2 0 0 2 2 2 0 Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator GTP-bdg_M PF16360.5 gi|336252705|ref|YP_004595812.1| - 1.1 9.9 12.4 0.55 10.9 0.3 3.0 2 1 1 3 3 3 0 GTP-binding GTPase Middle Region COG2 PF06148.11 gi|336252705|ref|YP_004595812.1| - 1.2 9.2 19.9 0.36 10.9 5.3 2.2 1 1 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 Spc29 PF17082.5 gi|336252705|ref|YP_004595812.1| - 1.2 8.9 9.0 4.8 7.0 1.7 2.0 2 0 0 2 2 2 0 Spindle Pole Component 29 DUF932 PF06067.11 gi|336252705|ref|YP_004595812.1| - 1.2 8.8 15.2 2.2 8.0 4.1 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF932) Cauli_AT PF03233.13 gi|336252705|ref|YP_004595812.1| - 1.3 8.9 9.5 1.7 8.5 1.8 2.2 2 0 0 2 2 2 0 Aphid transmission protein FUSC PF04632.12 gi|336252705|ref|YP_004595812.1| - 1.4 7.4 9.3 1.9 6.9 9.3 1.2 1 0 0 1 1 1 0 Fusaric acid resistance protein family CENP-Q PF13094.6 gi|336252705|ref|YP_004595812.1| - 1.5 9.0 21.7 0.65 10.2 5.2 2.2 2 0 0 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit bZIP_Maf PF03131.17 gi|336252705|ref|YP_004595812.1| - 1.5 9.4 22.6 3.8 8.1 8.5 2.4 2 0 0 2 2 2 0 bZIP Maf transcription factor Osmo_CC PF08946.10 gi|336252705|ref|YP_004595812.1| - 1.6 9.0 30.8 7.3 6.9 9.6 4.3 3 2 1 4 4 4 0 Osmosensory transporter coiled coil SPT16 PF08644.11 gi|336252705|ref|YP_004595812.1| - 1.6 8.9 11.2 1.4 9.1 0.5 2.1 2 0 0 2 2 2 0 FACT complex subunit (SPT16/CDC68) Mt_ATP-synt_D PF05873.12 gi|336252705|ref|YP_004595812.1| - 1.7 8.5 12.1 0.95 9.3 2.6 2.1 2 0 0 2 2 2 0 ATP synthase D chain, mitochondrial (ATP5H) bZIP_1 PF00170.21 gi|336252705|ref|YP_004595812.1| - 1.8 8.7 18.4 1.3 9.1 0.4 3.4 2 2 1 3 3 3 0 bZIP transcription factor L31 PF09784.9 gi|336252705|ref|YP_004595812.1| - 2 8.9 8.0 8.4 6.9 2.1 2.3 2 1 0 2 2 2 0 Mitochondrial ribosomal protein L31 PRKG1_interact PF15898.5 gi|336252705|ref|YP_004595812.1| - 2.1 9.3 20.0 1.4 9.9 4.0 2.3 2 1 0 2 2 2 0 cGMP-dependent protein kinase interacting domain CENP-H PF05837.12 gi|336252705|ref|YP_004595812.1| - 2.3 8.6 24.4 6.7 7.2 9.8 2.2 1 1 0 2 2 2 0 Centromere protein H (CENP-H) DUF2968 PF11180.8 gi|336252705|ref|YP_004595812.1| - 2.3 7.8 30.0 2.4 7.7 10.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2968) Sas10_Utp3 PF04000.15 gi|336252705|ref|YP_004595812.1| - 2.4 8.8 13.6 0.34 11.5 1.8 2.6 2 1 0 2 2 2 0 Sas10/Utp3/C1D family DUF3552 PF12072.8 gi|336252705|ref|YP_004595812.1| - 2.5 7.5 24.7 0.46 9.9 9.3 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF3552) DUF3138 PF11336.8 gi|336252705|ref|YP_004595812.1| - 2.7 6.5 9.4 0.17 10.5 3.3 1.8 1 1 1 2 2 1 0 Protein of unknown function (DUF3138) USP8_interact PF08941.10 gi|336252705|ref|YP_004595812.1| - 2.7 7.8 11.3 0.52 10.1 0.6 2.2 2 0 0 2 2 2 0 USP8 interacting Vps53_N PF04100.12 gi|336252705|ref|YP_004595812.1| - 2.7 6.8 12.5 0.65 8.9 1.7 2.1 2 0 0 2 2 2 0 Vps53-like, N-terminal PspA_IM30 PF04012.12 gi|336252705|ref|YP_004595812.1| - 2.8 7.5 28.1 4.2 6.9 7.2 2.3 2 1 0 2 2 2 0 PspA/IM30 family Tho2 PF11262.8 gi|336252705|ref|YP_004595812.1| - 2.8 7.1 11.9 1.2 8.3 2.1 2.0 2 0 0 2 2 2 0 Transcription factor/nuclear export subunit protein 2 DUF4140 PF13600.6 gi|336252705|ref|YP_004595812.1| - 2.8 8.4 25.6 13 6.3 9.6 3.2 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) MtrG PF04210.13 gi|336252705|ref|YP_004595812.1| - 2.9 7.8 8.2 8.4 6.3 0.5 2.8 2 2 1 3 3 2 0 Tetrahydromethanopterin S-methyltransferase, subunit G DUF641 PF04859.12 gi|336252705|ref|YP_004595812.1| - 2.9 8.2 13.5 5.2 7.4 3.9 2.3 2 0 0 2 2 2 0 Plant protein of unknown function (DUF641) DUF724 PF05266.14 gi|336252705|ref|YP_004595812.1| - 2.9 7.7 20.8 4.8 7.0 8.4 2.2 1 1 0 2 2 2 0 Protein of unknown function (DUF724) zf-CpG_bind_C PF12269.8 gi|336252705|ref|YP_004595812.1| - 2.9 7.6 15.2 4.8 6.9 4.3 2.1 2 0 0 2 2 2 0 CpG binding protein zinc finger C terminal domain TMPIT PF07851.13 gi|336252705|ref|YP_004595812.1| - 3 7.0 16.4 0.6 9.3 1.7 2.0 1 1 1 2 2 2 0 TMPIT-like protein CASP_C PF08172.12 gi|336252705|ref|YP_004595812.1| - 3 7.1 18.0 9.4 5.5 17.7 1.8 1 1 0 1 1 1 0 CASP C terminal EMP24_GP25L PF01105.24 gi|336252705|ref|YP_004595812.1| - 3.1 7.7 15.8 3.4 7.6 4.4 2.1 2 0 0 2 2 2 0 emp24/gp25L/p24 family/GOLD HalX PF08663.10 gi|336252705|ref|YP_004595812.1| - 3.3 8.1 26.0 0.12 12.7 4.8 3.8 2 2 2 4 4 4 0 HalX domain DUF1192 PF06698.11 gi|336252705|ref|YP_004595812.1| - 3.7 7.7 17.4 1.9 8.6 3.7 2.9 2 1 0 3 3 2 0 Protein of unknown function (DUF1192) Fmp27_WPPW PF10359.9 gi|336252705|ref|YP_004595812.1| - 3.7 6.3 19.0 3 6.6 3.9 2.0 1 1 1 2 2 2 0 RNA pol II promoter Fmp27 protein domain Nsp1_C PF05064.13 gi|336252705|ref|YP_004595812.1| - 3.7 7.4 19.8 2.6 7.9 7.0 2.2 2 0 0 2 2 2 0 Nsp1-like C-terminal region DLP_helical PF18709.1 gi|336252705|ref|YP_004595812.1| - 3.8 6.6 15.9 3.5 6.7 4.8 2.1 2 0 0 2 2 2 0 Dynamin-like helical domain Syntaxin-6_N PF09177.11 gi|336252705|ref|YP_004595812.1| - 3.9 8.1 16.2 0.94 10.1 2.0 2.7 2 1 0 2 2 2 0 Syntaxin 6, N-terminal DUF1515 PF07439.11 gi|336252705|ref|YP_004595812.1| - 3.9 7.5 11.6 1.1 9.3 2.3 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF1515) Med9 PF07544.13 gi|336252705|ref|YP_004595812.1| - 4 7.6 22.0 1.8 8.7 4.8 2.3 2 1 0 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 MRP-L28 PF09812.9 gi|336252705|ref|YP_004595812.1| - 4.1 7.5 16.2 0.42 10.7 3.5 2.3 2 0 0 2 2 2 0 Mitochondrial ribosomal protein L28 Med10 PF09748.9 gi|336252705|ref|YP_004595812.1| - 4.2 7.4 14.1 0.44 10.5 3.1 2.4 2 1 0 2 2 2 0 Transcription factor subunit Med10 of Mediator complex UPF0449 PF15136.6 gi|336252705|ref|YP_004595812.1| - 4.2 7.9 20.9 6.4 7.3 6.9 2.4 2 1 0 2 2 2 0 Uncharacterised protein family UPF0449 Tweety PF04906.13 gi|336252705|ref|YP_004595812.1| - 4.5 5.8 6.8 1.6 7.3 0.4 2.0 2 0 0 2 2 2 0 Tweety FAD-SLDH PF12318.8 gi|336252705|ref|YP_004595812.1| - 4.5 7.3 9.1 4.7 7.3 1.4 2.3 2 0 0 2 2 2 0 Membrane bound FAD containing D-sorbitol dehydrogenase Nup54 PF13874.6 gi|336252705|ref|YP_004595812.1| - 4.6 7.3 19.2 6.7 6.8 3.9 2.2 2 0 0 2 2 2 0 Nucleoporin complex subunit 54 Hemagglutinin PF00509.18 gi|336252705|ref|YP_004595812.1| - 4.9 5.4 8.0 3.6 5.9 0.4 2.0 2 0 0 2 2 2 0 Haemagglutinin KfrA_N PF11740.8 gi|336252705|ref|YP_004595812.1| - 5 7.8 33.3 1.6 9.4 10.7 3.0 1 1 1 3 3 2 0 Plasmid replication region DNA-binding N-term DUF4665 PF15679.5 gi|336252705|ref|YP_004595812.1| - 5.2 7.8 13.1 2.2 8.9 1.4 2.6 2 1 1 3 3 2 0 Domain of unknown function (DUF4665) DUF2203 PF09969.9 gi|336252705|ref|YP_004595812.1| - 5.3 7.8 17.3 3.8 8.3 3.8 2.4 1 1 0 2 2 2 0 Uncharacterized conserved protein (DUF2203) PHM7_cyt PF14703.6 gi|336252705|ref|YP_004595812.1| - 5.4 7.2 12.9 11 6.2 1.0 2.5 2 1 0 2 2 2 0 Cytosolic domain of 10TM putative phosphate transporter Cep57_MT_bd PF06657.13 gi|336252705|ref|YP_004595812.1| - 5.6 7.5 22.6 3.3 8.2 5.4 3.0 2 1 1 3 3 3 0 Centrosome microtubule-binding domain of Cep57 LPP PF04728.13 gi|336252705|ref|YP_004595812.1| - 5.8 7.4 26.4 0.54 10.7 5.6 2.9 3 1 0 3 3 2 0 Lipoprotein leucine-zipper WXG100 PF06013.12 gi|336252705|ref|YP_004595812.1| - 6.6 7.0 24.2 6.6 7.1 4.0 3.3 2 2 1 3 3 3 0 Proteins of 100 residues with WXG CorA PF01544.18 gi|336252705|ref|YP_004595812.1| - 6.6 6.0 18.2 2e+02 1.1 18.2 2.2 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein DUF16 PF01519.16 gi|336252705|ref|YP_004595812.1| - 6.8 7.2 27.3 6.1 7.4 6.8 2.2 2 1 0 2 2 2 0 Protein of unknown function DUF16 Rho_Binding PF08912.11 gi|336252705|ref|YP_004595812.1| - 6.8 7.6 27.2 6.8 7.6 8.1 2.7 2 1 0 2 2 2 0 Rho Binding DUF2205 PF10224.9 gi|336252705|ref|YP_004595812.1| - 7.3 6.7 25.7 7.4 6.6 6.6 2.9 2 1 1 3 3 3 0 Short coiled-coil protein Vps52 PF04129.12 gi|336252705|ref|YP_004595812.1| - 7.4 5.2 10.5 0.46 9.2 1.3 2.0 2 0 0 2 2 2 0 Vps52 / Sac2 family CCDC106 PF15794.5 gi|336252705|ref|YP_004595812.1| - 7.6 6.2 13.6 2.8 7.6 5.6 2.1 2 0 0 2 2 2 0 Coiled-coil domain-containing protein 106 BRE1 PF08647.11 gi|336252705|ref|YP_004595812.1| - 7.7 6.7 24.7 1.2 9.3 6.9 2.4 2 1 0 2 2 2 0 BRE1 E3 ubiquitin ligase Swi5 PF07061.11 gi|336252705|ref|YP_004595812.1| - 7.8 6.7 24.2 2.6 8.2 6.4 3.1 2 1 1 3 3 3 0 Swi5 FAM76 PF16046.5 gi|336252705|ref|YP_004595812.1| - 8.2 5.7 11.0 7.5 5.8 1.8 2.1 2 0 0 2 2 2 0 FAM76 protein Fungal_TACC PF12709.7 gi|336252705|ref|YP_004595812.1| - 9.7 6.7 20.2 4.9 7.7 6.8 2.5 2 1 0 2 2 2 0 Fungal Transforming acidic coiled-coil (TACC) proteins Pro_CA PF00484.19 gi|336252705|ref|YP_004595812.1| - 9.8 6.4 7.4 19 5.5 2.2 2.1 2 0 0 2 2 2 0 Carbonic anhydrase SRP54 PF00448.22 gi|336252706|ref|YP_004595813.1| - 6.5e-68 228.2 0.2 9.3e-68 227.7 0.2 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.19 gi|336252706|ref|YP_004595813.1| - 4.8e-13 49.1 0.7 4.8e-13 49.1 0.7 2.4 2 0 0 2 2 2 1 SRP54-type protein, helical bundle domain APS_kinase PF01583.20 gi|336252706|ref|YP_004595813.1| - 2.4e-05 24.3 0.0 4.3e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 Adenylylsulphate kinase AAA_30 PF13604.6 gi|336252706|ref|YP_004595813.1| - 0.0005 19.8 0.7 0.0023 17.7 0.7 2.1 1 1 0 1 1 1 1 AAA domain Thymidylate_kin PF02223.17 gi|336252706|ref|YP_004595813.1| - 0.00063 19.5 0.8 0.019 14.6 0.0 2.8 3 0 0 3 3 2 1 Thymidylate kinase CbiA PF01656.23 gi|336252706|ref|YP_004595813.1| - 0.0008 19.5 0.1 0.0016 18.5 0.1 1.6 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Zeta_toxin PF06414.12 gi|336252706|ref|YP_004595813.1| - 0.00092 18.5 1.4 0.00098 18.4 0.1 1.7 2 0 0 2 2 2 1 Zeta toxin NTPase_1 PF03266.15 gi|336252706|ref|YP_004595813.1| - 0.0024 17.8 0.3 0.0095 15.9 0.1 2.0 2 0 0 2 2 2 1 NTPase 6PF2K PF01591.18 gi|336252706|ref|YP_004595813.1| - 0.003 16.9 0.0 0.0056 16.0 0.0 1.4 1 0 0 1 1 1 1 6-phosphofructo-2-kinase AAA_33 PF13671.6 gi|336252706|ref|YP_004595813.1| - 0.006 16.8 0.0 0.015 15.4 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|336252706|ref|YP_004595813.1| - 0.0069 16.6 0.3 0.0069 16.6 0.3 3.4 3 1 0 3 3 3 1 AAA domain LytR_C PF13399.6 gi|336252706|ref|YP_004595813.1| - 0.0077 17.2 0.2 0.051 14.5 0.2 2.4 1 0 0 1 1 1 1 LytR cell envelope-related transcriptional attenuator AAA_16 PF13191.6 gi|336252706|ref|YP_004595813.1| - 0.0079 16.6 0.0 0.0079 16.6 0.0 2.8 2 1 0 2 2 1 1 AAA ATPase domain cobW PF02492.19 gi|336252706|ref|YP_004595813.1| - 0.0083 15.7 0.2 0.017 14.7 0.2 1.5 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_22 PF13401.6 gi|336252706|ref|YP_004595813.1| - 0.01 16.1 0.1 0.12 12.6 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_17 PF13207.6 gi|336252706|ref|YP_004595813.1| - 0.011 16.2 0.1 0.011 16.2 0.1 2.8 3 0 0 3 3 2 0 AAA domain ATP_bind_1 PF03029.17 gi|336252706|ref|YP_004595813.1| - 0.02 14.7 0.0 0.036 13.9 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein KTI12 PF08433.10 gi|336252706|ref|YP_004595813.1| - 0.022 14.2 0.0 0.034 13.6 0.0 1.2 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_24 PF13479.6 gi|336252706|ref|YP_004595813.1| - 0.027 14.2 0.0 0.048 13.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain MeaB PF03308.16 gi|336252706|ref|YP_004595813.1| - 0.031 13.3 0.0 0.064 12.2 0.0 1.4 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB PPK2 PF03976.14 gi|336252706|ref|YP_004595813.1| - 0.05 13.1 0.0 0.08 12.4 0.0 1.2 1 0 0 1 1 1 0 Polyphosphate kinase 2 (PPK2) AAA_19 PF13245.6 gi|336252706|ref|YP_004595813.1| - 0.054 13.8 0.1 0.1 12.9 0.1 1.5 1 0 0 1 1 1 0 AAA domain ArsA_ATPase PF02374.15 gi|336252706|ref|YP_004595813.1| - 0.098 11.8 0.3 0.32 10.1 0.1 1.9 1 1 1 2 2 2 0 Anion-transporting ATPase AAA_29 PF13555.6 gi|336252706|ref|YP_004595813.1| - 0.11 12.3 0.1 0.38 10.5 0.0 1.9 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_7 PF12775.7 gi|336252706|ref|YP_004595813.1| - 0.2 11.1 0.0 0.33 10.5 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region NIR_SIR PF01077.22 gi|336252707|ref|YP_004595814.1| - 1.7e-51 173.9 0.0 1.6e-37 128.5 0.0 2.3 2 0 0 2 2 2 2 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 gi|336252707|ref|YP_004595814.1| - 1.8e-27 95.0 0.1 1.8e-12 46.9 0.0 3.3 3 1 0 3 3 3 2 Nitrite/Sulfite reductase ferredoxin-like half domain DGC PF08859.11 gi|336252707|ref|YP_004595814.1| - 0.0063 16.6 0.1 0.24 11.5 0.0 2.5 2 0 0 2 2 2 1 DGC domain zf-HC2 PF13490.6 gi|336252707|ref|YP_004595814.1| - 0.013 15.7 3.7 2.5 8.4 0.9 2.9 2 0 0 2 2 2 0 Putative zinc-finger Toxin_TOLIP PF00087.21 gi|336252707|ref|YP_004595814.1| - 0.17 12.2 1.6 15 5.9 0.0 3.1 3 0 0 3 3 3 0 Snake toxin and toxin-like protein FrhB_FdhB_C PF04432.13 gi|336252708|ref|YP_004595815.1| - 2.4e-29 102.2 0.0 5.3e-29 101.0 0.0 1.5 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|336252708|ref|YP_004595815.1| - 6.5e-20 71.1 0.1 1.4e-19 70.0 0.1 1.5 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_21 PF14697.6 gi|336252708|ref|YP_004595815.1| - 1.3e-09 38.1 5.9 1.3e-09 38.1 5.9 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|336252708|ref|YP_004595815.1| - 3.2e-09 36.2 18.0 5.6e-07 29.1 4.2 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|336252708|ref|YP_004595815.1| - 3.6e-09 37.4 2.1 0.0057 17.6 0.1 3.7 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.6 gi|336252708|ref|YP_004595815.1| - 2.1e-08 34.1 6.5 2.1e-08 34.1 6.5 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|336252708|ref|YP_004595815.1| - 3.3e-08 33.5 7.6 6.8e-08 32.5 4.9 2.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|336252708|ref|YP_004595815.1| - 6.3e-06 26.7 21.3 0.00029 21.4 10.9 3.3 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|336252708|ref|YP_004595815.1| - 7.8e-06 25.7 3.7 7.8e-06 25.7 3.7 3.2 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_2 PF12797.7 gi|336252708|ref|YP_004595815.1| - 4.8e-05 23.2 3.3 4.8e-05 23.2 3.3 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|336252708|ref|YP_004595815.1| - 9.6e-05 22.9 7.3 0.014 15.9 0.2 2.9 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|336252708|ref|YP_004595815.1| - 0.0015 18.9 21.3 0.0015 18.9 4.2 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|336252708|ref|YP_004595815.1| - 0.0057 16.8 2.0 0.0057 16.8 2.0 1.8 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|336252708|ref|YP_004595815.1| - 0.0067 16.9 13.7 0.11 13.1 4.3 3.1 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_3 PF12798.7 gi|336252708|ref|YP_004595815.1| - 0.048 14.6 4.7 0.048 14.6 4.7 3.1 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|336252708|ref|YP_004595815.1| - 0.092 13.2 14.6 0.55 10.7 3.9 3.2 2 1 2 4 4 4 0 4Fe-4S dicluster domain PAP2 PF01569.21 gi|336252709|ref|YP_004595816.1| - 1.2e-17 63.9 2.2 1.2e-17 63.9 2.2 2.2 2 0 0 2 2 2 1 PAP2 superfamily PAP2_3 PF14378.6 gi|336252709|ref|YP_004595816.1| - 2.1e-08 34.1 6.4 2.1e-08 34.1 6.4 1.9 2 0 0 2 2 2 1 PAP2 superfamily PAP2_C PF14360.6 gi|336252709|ref|YP_004595816.1| - 0.04 14.5 0.3 0.11 13.1 0.3 1.7 1 0 0 1 1 1 0 PAP2 superfamily C-terminal LPG_synthase_TM PF03706.13 gi|336252709|ref|YP_004595816.1| - 0.26 10.8 27.3 0.69 9.4 5.8 2.5 1 1 1 2 2 2 0 Lysylphosphatidylglycerol synthase TM region Bactofilin PF04519.13 gi|336252710|ref|YP_004595817.1| - 3.8e-10 39.9 9.3 1.2e-08 35.1 9.2 2.2 1 1 0 1 1 1 1 Polymer-forming cytoskeletal Phage_spike PF18715.1 gi|336252710|ref|YP_004595817.1| - 0.00031 20.8 1.7 0.65 10.1 0.0 2.8 2 1 0 2 2 2 2 Phage spike trimer FapA PF03961.13 gi|336252710|ref|YP_004595817.1| - 0.16 10.6 9.9 0.35 9.4 8.9 1.7 1 1 0 1 1 1 0 Flagellar Assembly Protein A Hexapep PF00132.24 gi|336252710|ref|YP_004595817.1| - 0.54 10.1 4.7 0.53 10.1 0.9 2.7 3 0 0 3 3 3 0 Bacterial transferase hexapeptide (six repeats) TAT_signal PF10518.9 gi|336252710|ref|YP_004595817.1| - 6.3 6.8 9.3 0.88 9.5 4.0 2.3 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence Acetyltransf_4 PF13420.7 gi|336252711|ref|YP_004595818.1| - 3.1e-34 118.4 0.0 3.6e-34 118.1 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|336252711|ref|YP_004595818.1| - 2.2e-14 53.7 0.1 3.4e-14 53.1 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|336252711|ref|YP_004595818.1| - 3.1e-10 40.1 0.0 4.4e-10 39.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|336252711|ref|YP_004595818.1| - 3.2e-09 37.1 0.1 4.8e-09 36.5 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|336252711|ref|YP_004595818.1| - 4.2e-09 37.2 0.0 5.7e-09 36.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|336252711|ref|YP_004595818.1| - 0.003 17.5 0.0 0.0055 16.6 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Abhydrolase_2 PF02230.16 gi|336252712|ref|YP_004595819.1| - 1.2e-22 80.8 0.0 4.9e-22 78.8 0.0 1.7 1 1 0 1 1 1 1 Phospholipase/Carboxylesterase DLH PF01738.18 gi|336252712|ref|YP_004595819.1| - 5e-10 39.3 0.0 6.9e-10 38.8 0.0 1.2 1 0 0 1 1 1 1 Dienelactone hydrolase family Hydrolase_4 PF12146.8 gi|336252712|ref|YP_004595819.1| - 8.9e-08 31.7 0.8 0.094 12.0 0.0 3.1 2 1 1 3 3 3 3 Serine aminopeptidase, S33 Peptidase_S9 PF00326.21 gi|336252712|ref|YP_004595819.1| - 1.3e-05 24.8 0.8 0.049 13.1 0.0 3.1 3 0 0 3 3 3 2 Prolyl oligopeptidase family Abhydrolase_1 PF00561.20 gi|336252712|ref|YP_004595819.1| - 0.00048 19.8 0.0 0.0016 18.1 0.0 1.8 2 1 0 2 2 2 1 alpha/beta hydrolase fold Esterase_phd PF10503.9 gi|336252712|ref|YP_004595819.1| - 0.00082 18.9 0.0 0.00098 18.7 0.0 1.2 1 0 0 1 1 1 1 Esterase PHB depolymerase FSH1 PF03959.13 gi|336252712|ref|YP_004595819.1| - 0.0019 17.9 0.0 0.0033 17.1 0.0 1.3 1 1 0 1 1 1 1 Serine hydrolase (FSH1) Abhydrolase_3 PF07859.13 gi|336252712|ref|YP_004595819.1| - 0.0021 18.0 0.2 1.6 8.5 0.0 2.4 1 1 0 2 2 2 2 alpha/beta hydrolase fold PE-PPE PF08237.11 gi|336252712|ref|YP_004595819.1| - 0.0028 17.2 0.0 0.0041 16.7 0.0 1.3 1 0 0 1 1 1 1 PE-PPE domain Palm_thioest PF02089.15 gi|336252712|ref|YP_004595819.1| - 0.022 14.6 0.0 0.025 14.4 0.0 1.2 1 0 0 1 1 1 0 Palmitoyl protein thioesterase DUF829 PF05705.14 gi|336252712|ref|YP_004595819.1| - 0.18 11.6 0.0 0.59 10.0 0.0 1.6 1 1 1 2 2 2 0 Eukaryotic protein of unknown function (DUF829) DUF3243 PF11588.8 gi|336252712|ref|YP_004595819.1| - 0.19 12.0 0.0 3.9 7.9 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3243) Cutinase PF01083.22 gi|336252712|ref|YP_004595819.1| - 0.2 11.6 0.0 0.26 11.2 0.0 1.3 1 0 0 1 1 1 0 Cutinase Glyoxalase PF00903.25 gi|336252713|ref|YP_004595820.1| - 6.8e-10 39.2 0.1 1e-09 38.6 0.1 1.3 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|336252713|ref|YP_004595820.1| - 1.4e-05 25.3 0.0 2.5e-05 24.5 0.0 1.6 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DUF3880 PF12996.7 gi|336252713|ref|YP_004595820.1| - 0.086 12.9 0.0 0.21 11.7 0.0 1.7 2 0 0 2 2 2 0 DUF based on E. rectale Gene description (DUF3880) Pyr_redox_2 PF07992.14 gi|336252714|ref|YP_004595821.1| - 2.4e-23 82.8 13.5 5.2e-13 48.9 2.6 2.1 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|336252714|ref|YP_004595821.1| - 5.8e-12 45.5 1.4 1.5e-06 27.8 0.1 2.6 1 1 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|336252714|ref|YP_004595821.1| - 4.6e-11 42.9 1.9 5.7e-05 22.9 0.1 2.1 1 1 1 2 2 2 2 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|336252714|ref|YP_004595821.1| - 9.8e-10 37.7 0.3 3.5e-05 22.7 0.1 2.2 1 1 1 2 2 2 2 HI0933-like protein FAD_binding_3 PF01494.19 gi|336252714|ref|YP_004595821.1| - 7e-09 35.4 1.5 4.2e-05 22.9 0.0 2.1 2 0 0 2 2 2 2 FAD binding domain FAD_binding_2 PF00890.24 gi|336252714|ref|YP_004595821.1| - 5.6e-07 29.0 3.2 5.9e-06 25.6 0.3 2.2 1 1 1 2 2 2 1 FAD binding domain GIDA PF01134.22 gi|336252714|ref|YP_004595821.1| - 7.6e-07 28.6 3.7 2.2e-05 23.7 0.3 2.7 1 1 1 3 3 3 1 Glucose inhibited division protein A NAD_binding_9 PF13454.6 gi|336252714|ref|YP_004595821.1| - 5.5e-06 26.5 0.9 0.0049 16.9 0.1 2.3 2 0 0 2 2 2 2 FAD-NAD(P)-binding NAD_binding_8 PF13450.6 gi|336252714|ref|YP_004595821.1| - 2.8e-05 24.3 0.0 6.4e-05 23.1 0.0 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 gi|336252714|ref|YP_004595821.1| - 0.00011 21.5 0.2 0.00018 20.8 0.2 1.6 1 1 0 1 1 1 1 Thi4 family FAD_oxidored PF12831.7 gi|336252714|ref|YP_004595821.1| - 0.00028 20.3 0.2 0.00028 20.3 0.2 1.7 2 1 0 3 3 3 1 FAD dependent oxidoreductase Lycopene_cycl PF05834.12 gi|336252714|ref|YP_004595821.1| - 0.00064 18.9 1.1 0.062 12.3 0.1 2.1 1 1 1 2 2 2 2 Lycopene cyclase protein AlaDh_PNT_C PF01262.21 gi|336252714|ref|YP_004595821.1| - 0.002 17.4 0.3 0.0037 16.6 0.2 1.5 1 1 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox PF00070.27 gi|336252714|ref|YP_004595821.1| - 0.0036 17.8 0.4 0.019 15.5 0.4 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Amino_oxidase PF01593.24 gi|336252714|ref|YP_004595821.1| - 0.015 14.6 0.1 0.11 11.7 0.0 1.9 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase Trp_halogenase PF04820.14 gi|336252714|ref|YP_004595821.1| - 0.02 13.8 3.9 0.83 8.4 0.4 2.2 2 0 0 2 2 2 0 Tryptophan halogenase K_oxygenase PF13434.6 gi|336252714|ref|YP_004595821.1| - 0.032 13.4 0.2 2.2 7.3 0.0 2.1 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) XdhC_C PF13478.6 gi|336252714|ref|YP_004595821.1| - 0.073 13.6 0.0 0.16 12.5 0.0 1.5 1 1 0 1 1 1 0 XdhC Rossmann domain GCS2 PF04107.13 gi|336252715|ref|YP_004595822.1| - 4.6e-11 42.6 0.8 1.4e-10 41.0 0.8 1.6 1 1 0 1 1 1 1 Glutamate-cysteine ligase family 2(GCS2) AAT PF03417.16 gi|336252716|ref|YP_004595823.1| - 6.3e-16 58.8 0.0 9.5e-16 58.2 0.0 1.2 1 0 0 1 1 1 1 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase CBAH PF02275.18 gi|336252716|ref|YP_004595823.1| - 0.0096 15.6 0.0 0.029 14.0 0.0 1.7 1 1 0 1 1 1 1 Linear amide C-N hydrolases, choloylglycine hydrolase family PSK_trans_fac PF07704.11 gi|336252716|ref|YP_004595823.1| - 2.6 8.9 7.9 5.3 7.9 4.0 2.6 2 0 0 2 2 2 0 Rv0623-like transcription factor Pilin_N PF07790.11 gi|336252717|ref|YP_004595824.1| - 1.9e-16 60.7 5.2 3.9e-16 59.7 5.2 1.7 1 1 0 1 1 1 1 Archaeal Type IV pilin, N-terminal Phage_integrase PF00589.22 gi|336252718|ref|YP_004595825.1| - 1.8e-10 40.9 0.0 6.7e-10 39.0 0.0 1.9 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.17 gi|336252718|ref|YP_004595825.1| - 2.1e-06 27.9 0.1 5.8e-06 26.5 0.1 1.7 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 gi|336252718|ref|YP_004595825.1| - 0.026 15.0 0.1 0.18 12.3 0.1 2.3 1 1 1 2 2 2 0 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 gi|336252718|ref|YP_004595825.1| - 0.099 13.0 0.0 0.42 11.0 0.0 1.9 2 0 0 2 2 2 0 Phage integrase SAM-like domain HTH_27 PF13463.6 gi|336252719|ref|YP_004595826.1| - 8.2e-05 23.0 0.0 0.00038 20.9 0.0 1.9 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_20 PF12840.7 gi|336252719|ref|YP_004595826.1| - 0.0016 18.5 0.1 0.0024 17.9 0.1 1.4 1 1 0 1 1 1 1 Helix-turn-helix domain RQC PF09382.10 gi|336252719|ref|YP_004595826.1| - 0.013 15.3 0.0 0.017 14.9 0.0 1.1 1 0 0 1 1 1 0 RQC domain PaaX PF07848.12 gi|336252719|ref|YP_004595826.1| - 0.018 15.2 0.0 0.029 14.6 0.0 1.4 1 1 0 1 1 1 0 PaaX-like protein HTH_45 PF14947.6 gi|336252719|ref|YP_004595826.1| - 0.022 14.8 0.0 0.033 14.2 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DUF4364 PF14277.6 gi|336252719|ref|YP_004595826.1| - 0.023 14.5 0.0 0.033 14.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) HTH_24 PF13412.6 gi|336252719|ref|YP_004595826.1| - 0.034 13.7 0.0 0.11 12.0 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Mrr_N PF14338.6 gi|336252719|ref|YP_004595826.1| - 0.046 13.9 0.0 0.077 13.1 0.0 1.5 1 0 0 1 1 1 0 Mrr N-terminal domain Replic_Relax PF13814.6 gi|336252719|ref|YP_004595826.1| - 0.048 13.7 0.0 0.057 13.5 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation PadR PF03551.14 gi|336252719|ref|YP_004595826.1| - 0.052 13.5 0.0 0.086 12.8 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family YjhX_toxin PF09857.9 gi|336252719|ref|YP_004595826.1| - 0.086 12.8 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 Putative toxin of bacterial toxin-antitoxin pair HTH_28 PF13518.6 gi|336252720|ref|YP_004595827.1| - 0.11 12.6 0.5 0.45 10.7 0.1 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain Pilin_N PF07790.11 gi|336252721|ref|YP_004595828.1| - 2e-16 60.6 6.0 2.9e-16 60.1 6.0 1.6 1 1 0 1 1 1 1 Archaeal Type IV pilin, N-terminal PGF-CTERM PF18204.1 gi|336252724|ref|YP_004595831.1| - 0.012 15.6 3.4 0.012 15.6 3.4 1.9 2 0 0 2 2 2 0 PGF-CTERM motif DUF4019 PF13211.6 gi|336252724|ref|YP_004595831.1| - 0.074 13.5 0.2 0.12 12.8 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4019) DUF1177 PF06675.11 gi|336252724|ref|YP_004595831.1| - 0.1 11.4 0.7 0.17 10.7 0.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1177) DUF2099 PF09872.9 gi|336252726|ref|YP_004595833.1| - 0.076 12.2 0.1 0.21 10.8 0.0 1.6 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2099) DUF2244 PF10003.9 gi|336252726|ref|YP_004595833.1| - 0.43 10.3 2.1 0.43 10.2 0.1 1.9 2 0 0 2 2 2 0 Integral membrane protein (DUF2244) T4_Rnl2_C PF18043.1 gi|336252727|ref|YP_004595834.1| - 0.018 15.2 0.2 0.042 14.0 0.1 1.8 1 1 0 1 1 1 0 T4 RNA ligase 2 C-terminal Arc_PepC_II PF06847.11 gi|336252727|ref|YP_004595834.1| - 0.93 10.1 2.8 13 6.3 1.2 2.4 2 0 0 2 2 2 0 Archaeal Peptidase A24 C-terminus Type II Sigma54_activ_2 PF14532.6 gi|336252728|ref|YP_004595835.1| - 0.018 15.2 0.0 0.031 14.4 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain HTH_28 PF13518.6 gi|336252728|ref|YP_004595835.1| - 0.11 12.6 0.0 0.26 11.5 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|336252730|ref|YP_004595837.1| - 0.0005 19.8 0.3 0.0009 19.0 0.3 1.4 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_r4_2 PF08281.12 gi|336252730|ref|YP_004595837.1| - 0.0084 15.8 0.0 0.019 14.7 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_Tnp_1_2 PF13022.6 gi|336252730|ref|YP_004595837.1| - 0.14 12.3 0.0 0.35 11.0 0.0 1.6 2 0 0 2 2 2 0 Helix-turn-helix of insertion element transposase DUF4330 PF14221.6 gi|336252732|ref|YP_004595839.1| - 0.037 14.3 0.0 0.047 13.9 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4330) LptC PF06835.13 gi|336252732|ref|YP_004595839.1| - 0.068 12.7 0.0 0.078 12.5 0.0 1.2 1 0 0 1 1 1 0 Lipopolysaccharide-assembly, LptC-related HTH_38 PF13936.6 gi|336252733|ref|YP_004595840.1| - 0.082 12.7 0.0 0.19 11.5 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain zf-ribbon_3 PF13248.6 gi|336252734|ref|YP_004595841.1| - 0.00013 21.2 2.6 0.042 13.3 0.1 2.1 1 1 1 2 2 2 2 zinc-ribbon domain zf-C2H2_6 PF13912.6 gi|336252734|ref|YP_004595841.1| - 0.0011 18.9 0.9 0.29 11.2 0.1 2.1 2 0 0 2 2 2 2 C2H2-type zinc finger C1_2 PF03107.16 gi|336252734|ref|YP_004595841.1| - 0.0036 17.6 0.9 0.0042 17.4 0.9 1.1 1 0 0 1 1 1 1 C1 domain zf-HIT PF04438.16 gi|336252734|ref|YP_004595841.1| - 0.0069 16.2 1.1 0.0082 16.0 1.1 1.2 1 0 0 1 1 1 1 HIT zinc finger Rubredoxin_2 PF18073.1 gi|336252734|ref|YP_004595841.1| - 0.0074 16.0 2.2 0.12 12.1 0.3 2.1 2 0 0 2 2 2 1 Rubredoxin metal binding domain zinc-ribbons_6 PF07191.12 gi|336252734|ref|YP_004595841.1| - 0.015 15.3 0.9 0.016 15.2 0.9 1.1 1 0 0 1 1 1 0 zinc-ribbons Ogr_Delta PF04606.12 gi|336252734|ref|YP_004595841.1| - 0.017 15.1 0.9 1.6 8.8 0.0 2.1 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-C4_Topoisom PF01396.19 gi|336252734|ref|YP_004595841.1| - 0.02 14.7 1.2 0.34 10.7 0.0 2.1 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger tRNA-synt_1g PF09334.11 gi|336252734|ref|YP_004595841.1| - 0.031 13.0 0.9 0.031 13.0 0.9 1.0 1 0 0 1 1 1 0 tRNA synthetases class I (M) Zn-ribbon_8 PF09723.10 gi|336252734|ref|YP_004595841.1| - 0.056 13.6 5.7 1 9.5 0.5 2.1 1 1 1 2 2 2 0 Zinc ribbon domain DNA_ligase_ZBD PF03119.16 gi|336252734|ref|YP_004595841.1| - 0.41 10.7 8.7 14 5.9 0.8 2.9 1 1 1 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Nudix_N_2 PF14803.6 gi|336252734|ref|YP_004595841.1| - 0.7 9.9 6.2 0.19 11.7 1.3 1.9 2 0 0 2 2 2 0 Nudix N-terminal zf-H2C2_2 PF13465.6 gi|336252734|ref|YP_004595841.1| - 1.7 9.2 4.6 16 6.1 0.2 2.1 1 1 1 2 2 2 0 Zinc-finger double domain Chlam_OMP3 PF03503.13 gi|336252735|ref|YP_004595842.1| - 0.074 13.4 0.0 7 7.0 0.0 2.4 2 0 0 2 2 2 0 Chlamydia cysteine-rich outer membrane protein 3 zinc_ribbon_9 PF14369.6 gi|336252736|ref|YP_004595843.1| - 0.014 15.6 0.9 2.6 8.4 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon FdhE PF04216.12 gi|336252736|ref|YP_004595843.1| - 0.15 11.9 0.0 0.17 11.8 0.0 1.0 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation DUF373 PF04123.13 gi|336252737|ref|YP_004595844.1| - 5.4 6.4 8.1 5.7 6.3 8.1 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF373) Adeno_E3_CR2 PF02439.15 gi|336252737|ref|YP_004595844.1| - 6.1 6.7 7.1 9.7 6.1 2.9 2.1 2 0 0 2 2 2 0 Adenovirus E3 region protein CR2 AAA_17 PF13207.6 gi|336252738|ref|YP_004595845.1| - 9.7e-17 61.7 0.2 1.7e-16 60.9 0.2 1.4 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|336252738|ref|YP_004595845.1| - 3.8e-10 40.4 0.0 5.8e-10 39.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain ADK PF00406.22 gi|336252738|ref|YP_004595845.1| - 7e-05 23.0 0.1 0.0001 22.5 0.1 1.2 1 0 0 1 1 1 1 Adenylate kinase AAA_33 PF13671.6 gi|336252738|ref|YP_004595845.1| - 0.00012 22.3 0.0 0.00026 21.2 0.0 1.6 1 1 0 1 1 1 1 AAA domain PEP-utilizers PF00391.23 gi|336252738|ref|YP_004595845.1| - 0.042 13.6 0.2 0.12 12.2 0.2 1.7 1 1 0 1 1 1 0 PEP-utilising enzyme, mobile domain RNA_binding PF01877.17 gi|336252739|ref|YP_004595846.1| - 1.8e-10 41.1 0.3 1.4e-09 38.3 0.3 2.1 1 1 0 1 1 1 1 RNA binding YkyA PF10368.9 gi|336252740|ref|YP_004595847.1| - 0.0031 17.2 1.6 0.16 11.6 0.0 3.0 2 1 1 3 3 3 1 Putative cell-wall binding lipoprotein Spc7 PF08317.11 gi|336252740|ref|YP_004595847.1| - 0.0065 15.4 6.4 0.3 9.9 1.1 2.3 1 1 1 2 2 2 2 Spc7 kinetochore protein DUF4200 PF13863.6 gi|336252740|ref|YP_004595847.1| - 0.069 13.6 0.4 17 5.8 0.0 3.2 3 0 0 3 3 3 0 Domain of unknown function (DUF4200) Prefoldin_2 PF01920.20 gi|336252740|ref|YP_004595847.1| - 0.1 12.6 1.4 1.1 9.3 0.2 2.4 1 1 0 2 2 2 0 Prefoldin subunit CENP-F_leu_zip PF10473.9 gi|336252740|ref|YP_004595847.1| - 0.21 11.6 8.5 0.11 12.5 1.1 2.7 2 1 1 3 3 3 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Phage_holin_7_1 PF16081.5 gi|336252740|ref|YP_004595847.1| - 4 7.6 12.1 3.3 7.9 1.9 3.2 3 1 0 3 3 3 0 Mycobacterial 2 TMS Phage Holin (M2 Hol) Family SRP54 PF00448.22 gi|336252741|ref|YP_004595848.1| - 7.1e-64 215.1 0.1 1.4e-63 214.1 0.1 1.5 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.19 gi|336252741|ref|YP_004595848.1| - 2.8e-28 98.4 5.3 2.8e-28 98.4 5.3 3.2 2 1 1 3 3 3 1 Signal peptide binding domain SRP54_N PF02881.19 gi|336252741|ref|YP_004595848.1| - 3.3e-17 62.5 1.6 6.3e-17 61.6 0.2 2.3 2 0 0 2 2 2 1 SRP54-type protein, helical bundle domain CARD PF00619.21 gi|336252741|ref|YP_004595848.1| - 0.0011 19.0 0.3 0.26 11.3 0.1 2.5 2 0 0 2 2 2 1 Caspase recruitment domain CbiA PF01656.23 gi|336252741|ref|YP_004595848.1| - 0.0013 18.8 0.0 0.0042 17.1 0.0 2.0 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Zeta_toxin PF06414.12 gi|336252741|ref|YP_004595848.1| - 0.0018 17.6 0.4 0.018 14.3 0.0 2.6 3 0 0 3 3 3 1 Zeta toxin cobW PF02492.19 gi|336252741|ref|YP_004595848.1| - 0.0019 17.8 0.8 0.023 14.3 0.8 2.4 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_22 PF13401.6 gi|336252741|ref|YP_004595848.1| - 0.0055 17.0 0.0 0.38 11.0 0.0 2.7 2 0 0 2 2 2 1 AAA domain DUF2202 PF09968.9 gi|336252741|ref|YP_004595848.1| - 0.01 15.7 0.1 0.028 14.3 0.1 1.8 1 0 0 1 1 1 0 Uncharacterized protein domain (DUF2202) AAA_24 PF13479.6 gi|336252741|ref|YP_004595848.1| - 0.02 14.6 0.1 0.063 13.0 0.0 2.0 2 1 0 2 2 2 0 AAA domain APS_kinase PF01583.20 gi|336252741|ref|YP_004595848.1| - 0.041 13.8 0.0 0.096 12.6 0.0 1.6 1 0 0 1 1 1 0 Adenylylsulphate kinase SMC_N PF02463.19 gi|336252741|ref|YP_004595848.1| - 0.049 13.1 0.0 0.086 12.3 0.0 1.4 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain KdpC PF02669.15 gi|336252741|ref|YP_004595848.1| - 0.054 13.3 0.1 0.12 12.2 0.1 1.5 1 0 0 1 1 1 0 K+-transporting ATPase, c chain ArsA_ATPase PF02374.15 gi|336252741|ref|YP_004595848.1| - 0.076 12.2 0.0 0.076 12.2 0.0 2.8 3 0 0 3 3 3 0 Anion-transporting ATPase AAA_33 PF13671.6 gi|336252741|ref|YP_004595848.1| - 0.11 12.6 0.0 0.32 11.1 0.0 1.7 1 0 0 1 1 1 0 AAA domain Tex_YqgF PF16921.5 gi|336252741|ref|YP_004595848.1| - 0.15 12.5 0.3 0.35 11.3 0.0 1.8 2 0 0 2 2 1 0 Tex protein YqgF-like domain AAA_25 PF13481.6 gi|336252741|ref|YP_004595848.1| - 0.25 10.9 2.0 1.2 8.7 2.0 2.2 1 1 0 1 1 1 0 AAA domain DUF4618 PF15397.6 gi|336252741|ref|YP_004595848.1| - 2.6 7.4 8.4 0.1 12.0 1.1 2.2 3 0 0 3 3 3 0 Domain of unknown function (DUF4618) HAD_2 PF13419.6 gi|336252742|ref|YP_004595849.1| - 1.9e-12 47.6 0.0 2.5e-12 47.2 0.0 1.3 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|336252742|ref|YP_004595849.1| - 1.5e-11 45.0 2.8 4.2e-11 43.5 2.8 1.6 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|336252742|ref|YP_004595849.1| - 0.00019 21.9 0.4 0.00022 21.7 0.4 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|336252742|ref|YP_004595849.1| - 0.00038 20.5 0.0 0.0013 18.7 0.0 2.0 1 0 0 1 1 1 1 HAD-hyrolase-like Usp PF00582.26 gi|336252744|ref|YP_004595851.1| - 1.6e-61 206.9 13.8 3.6e-32 111.8 2.1 2.0 2 0 0 2 2 2 2 Universal stress protein family Glyco_trans_4_5 PF16994.5 gi|336252744|ref|YP_004595851.1| - 0.12 12.0 0.0 0.2 11.2 0.0 1.4 1 0 0 1 1 1 0 Glycosyl-transferase family 4 EMC3_TMCO1 PF01956.16 gi|336252745|ref|YP_004595852.1| - 2.9e-20 72.7 0.0 4e-20 72.2 0.0 1.1 1 0 0 1 1 1 1 Integral membrane protein EMC3/TMCO1-like Pyr_redox_2 PF07992.14 gi|336252746|ref|YP_004595853.1| - 2.3e-47 161.7 0.9 4.1e-47 160.8 0.7 1.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|336252746|ref|YP_004595853.1| - 5e-27 94.3 0.0 8.5e-27 93.6 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 gi|336252746|ref|YP_004595853.1| - 1.1e-16 61.1 0.8 2.6e-13 50.3 0.0 2.6 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|336252746|ref|YP_004595853.1| - 1.5e-07 30.9 0.2 3e-05 23.5 0.0 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase K_oxygenase PF13434.6 gi|336252746|ref|YP_004595853.1| - 4.1e-07 29.5 0.0 2.1e-05 23.8 0.0 2.8 2 1 1 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) GIDA PF01134.22 gi|336252746|ref|YP_004595853.1| - 1.6e-06 27.5 1.0 3.8e-06 26.2 0.1 1.9 2 0 0 2 2 2 1 Glucose inhibited division protein A FAD_binding_2 PF00890.24 gi|336252746|ref|YP_004595853.1| - 0.00038 19.7 4.2 0.66 9.0 0.0 2.4 2 0 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.7 gi|336252746|ref|YP_004595853.1| - 0.0052 16.2 1.1 0.0084 15.5 1.1 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase 3HCDH_N PF02737.18 gi|336252746|ref|YP_004595853.1| - 0.0081 16.1 1.7 0.82 9.5 0.1 3.1 3 0 0 3 3 3 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|336252746|ref|YP_004595853.1| - 0.13 11.8 0.1 0.25 10.9 0.1 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DAO PF01266.24 gi|336252746|ref|YP_004595853.1| - 0.15 11.6 7.1 1.1 8.8 2.5 2.7 2 0 0 2 2 2 0 FAD dependent oxidoreductase Aldo_ket_red PF00248.21 gi|336252747|ref|YP_004595854.1| - 2e-52 178.3 0.0 2.2e-50 171.5 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family Ish1 PF10281.9 gi|336252747|ref|YP_004595854.1| - 0.029 14.7 0.1 1.5 9.2 0.0 2.7 2 0 0 2 2 2 0 Putative stress-responsive nuclear envelope protein DoxX PF07681.12 gi|336252748|ref|YP_004595855.1| - 4.9e-09 36.7 12.9 4.9e-09 36.7 12.9 2.2 1 1 1 2 2 2 1 DoxX DoxD PF04173.13 gi|336252748|ref|YP_004595855.1| - 0.00032 20.7 5.0 0.00051 20.0 5.0 1.3 1 0 0 1 1 1 1 TQO small subunit DoxD VKG_Carbox PF05090.14 gi|336252748|ref|YP_004595855.1| - 1.1 8.0 5.5 2 7.2 5.5 1.5 1 1 0 1 1 1 0 Vitamin K-dependent gamma-carboxylase HTH_20 PF12840.7 gi|336252749|ref|YP_004595856.1| - 1.8e-09 37.5 0.0 3.1e-09 36.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|336252749|ref|YP_004595856.1| - 0.00018 21.3 0.0 0.00037 20.3 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|336252749|ref|YP_004595856.1| - 0.00088 19.0 0.2 0.0026 17.5 0.0 1.9 3 0 0 3 3 3 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|336252749|ref|YP_004595856.1| - 0.039 13.8 0.0 0.077 12.9 0.0 1.5 1 0 0 1 1 1 0 MarR family DUF742 PF05331.11 gi|336252749|ref|YP_004595856.1| - 0.06 13.2 0.1 0.092 12.6 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF742) HTH_7 PF02796.15 gi|336252749|ref|YP_004595856.1| - 0.08 13.0 0.0 0.18 11.9 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_11 PF08279.12 gi|336252749|ref|YP_004595856.1| - 0.11 12.5 0.0 0.22 11.5 0.0 1.5 1 0 0 1 1 1 0 HTH domain HTH_5 PF01022.20 gi|336252749|ref|YP_004595856.1| - 0.12 12.3 0.0 0.22 11.4 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|336252749|ref|YP_004595856.1| - 0.14 11.7 0.0 0.33 10.5 0.0 1.8 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding Rhodanese PF00581.20 gi|336252750|ref|YP_004595857.1| - 2e-41 140.9 0.0 8.4e-21 74.5 0.0 2.1 2 0 0 2 2 2 2 Rhodanese-like domain Rhodanese PF00581.20 gi|336252751|ref|YP_004595858.1| - 1.1e-36 125.6 0.5 6.7e-19 68.4 0.0 2.1 2 0 0 2 2 2 2 Rhodanese-like domain TrmB PF01978.19 gi|336252752|ref|YP_004595859.1| - 0.0015 18.4 0.0 0.0026 17.6 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|336252752|ref|YP_004595859.1| - 0.0024 17.9 0.1 0.029 14.5 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|336252752|ref|YP_004595859.1| - 0.062 13.0 0.1 3.8 7.3 0.2 2.4 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain RP-C PF03428.13 gi|336252752|ref|YP_004595859.1| - 0.079 12.6 4.2 0.2 11.3 0.5 2.4 2 1 0 2 2 2 0 Replication protein C N-terminal domain Rubrerythrin PF02915.17 gi|336252755|ref|YP_004595862.1| - 0.00071 20.0 1.6 0.03 14.7 0.3 2.3 2 0 0 2 2 2 2 Rubrerythrin HEAT_2 PF13646.6 gi|336252755|ref|YP_004595862.1| - 0.082 13.3 2.2 15 6.1 0.1 3.1 2 1 1 3 3 3 0 HEAT repeats TPR_7 PF13176.6 gi|336252755|ref|YP_004595862.1| - 1.4 9.1 4.3 1 9.5 0.4 2.5 2 1 0 2 2 2 0 Tetratricopeptide repeat HK PF02110.15 gi|336252758|ref|YP_004595865.1| - 1.4e-66 224.4 1.4 1.6e-66 224.2 1.4 1.0 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Carb_kinase PF01256.17 gi|336252758|ref|YP_004595865.1| - 1.6e-06 27.8 0.6 2.1e-06 27.4 0.6 1.1 1 0 0 1 1 1 1 Carbohydrate kinase Phos_pyr_kin PF08543.12 gi|336252758|ref|YP_004595865.1| - 1.9e-05 24.2 0.2 2.9e-05 23.6 0.2 1.3 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase AP_endonuc_2 PF01261.24 gi|336252758|ref|YP_004595865.1| - 0.038 13.4 0.0 0.056 12.9 0.0 1.4 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel TMP-TENI PF02581.17 gi|336252759|ref|YP_004595866.1| - 2e-62 209.7 4.0 2.5e-62 209.4 4.0 1.1 1 0 0 1 1 1 1 Thiamine monophosphate synthase NMO PF03060.15 gi|336252759|ref|YP_004595866.1| - 2.9e-07 30.2 8.4 3.8e-07 29.8 8.4 1.1 1 0 0 1 1 1 1 Nitronate monooxygenase ThiG PF05690.14 gi|336252759|ref|YP_004595866.1| - 0.00017 21.0 4.4 0.0004 19.8 4.4 1.6 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG DHO_dh PF01180.21 gi|336252759|ref|YP_004595866.1| - 0.012 14.8 1.4 0.021 14.1 1.4 1.3 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase DUF561 PF04481.12 gi|336252759|ref|YP_004595866.1| - 0.079 12.1 0.6 0.17 11.0 0.6 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF561) Copper-bind PF00127.20 gi|336252760|ref|YP_004595867.1| - 0.19 12.2 0.0 0.28 11.7 0.0 1.2 1 0 0 1 1 1 0 Copper binding proteins, plastocyanin/azurin family Usp PF00582.26 gi|336252761|ref|YP_004595868.1| - 6.1e-34 117.5 6.1 7.3e-34 117.3 6.1 1.1 1 0 0 1 1 1 1 Universal stress protein family baeRF_family10 PF18854.1 gi|336252761|ref|YP_004595868.1| - 0.027 14.7 4.0 0.048 13.9 3.9 1.4 1 1 0 1 1 1 0 Bacterial archaeo-eukaryotic release factor family 10 PSK_trans_fac PF07704.11 gi|336252761|ref|YP_004595868.1| - 0.32 11.8 6.0 0.44 11.3 4.7 1.9 1 1 1 2 2 2 0 Rv0623-like transcription factor Peptidase_M29 PF02073.15 gi|336252762|ref|YP_004595869.1| - 1.8e-69 234.5 0.1 2.3e-69 234.2 0.1 1.0 1 0 0 1 1 1 1 Thermophilic metalloprotease (M29) HTH_10 PF04967.12 gi|336252765|ref|YP_004595872.1| - 2.6e-11 43.1 0.0 5.3e-11 42.1 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain Ribo_biogen_C PF04034.13 gi|336252765|ref|YP_004595872.1| - 0.092 12.5 0.0 0.14 11.9 0.0 1.2 1 0 0 1 1 1 0 Ribosome biogenesis protein, C-terminal Methyltransf_31 PF13847.6 gi|336252766|ref|YP_004595873.1| - 3.8e-20 72.2 0.0 4.4e-20 72.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|336252766|ref|YP_004595873.1| - 1.1e-19 70.9 0.0 1.9e-19 70.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|336252766|ref|YP_004595873.1| - 4.1e-16 59.5 0.0 6.3e-16 58.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|336252766|ref|YP_004595873.1| - 9.2e-16 58.3 0.0 2.1e-15 57.2 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|336252766|ref|YP_004595873.1| - 1.4e-13 51.0 0.0 1.9e-13 50.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|336252766|ref|YP_004595873.1| - 2.4e-13 50.3 0.0 4.4e-13 49.5 0.0 1.4 2 0 0 2 2 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Ubie_methyltran PF01209.18 gi|336252766|ref|YP_004595873.1| - 1.1e-12 47.8 0.0 1.3e-12 47.5 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family NodS PF05401.11 gi|336252766|ref|YP_004595873.1| - 9.4e-07 28.6 0.0 1.3e-06 28.2 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) GCD14 PF08704.10 gi|336252766|ref|YP_004595873.1| - 4.3e-06 26.6 0.0 5.6e-06 26.2 0.0 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit CMAS PF02353.20 gi|336252766|ref|YP_004595873.1| - 9.6e-06 25.1 0.0 1.3e-05 24.7 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltr_RsmB-F PF01189.17 gi|336252766|ref|YP_004595873.1| - 4.1e-05 23.3 0.0 6e-05 22.8 0.0 1.1 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F MTS PF05175.14 gi|336252766|ref|YP_004595873.1| - 7.5e-05 22.3 0.0 0.00015 21.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase small domain FtsJ PF01728.19 gi|336252766|ref|YP_004595873.1| - 0.0024 18.0 0.0 0.0039 17.3 0.0 1.4 1 1 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_4 PF02390.17 gi|336252766|ref|YP_004595873.1| - 0.0025 17.3 0.0 0.0035 16.8 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase RrnaAD PF00398.20 gi|336252766|ref|YP_004595873.1| - 0.0025 16.9 0.0 0.0034 16.5 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase TehB PF03848.14 gi|336252766|ref|YP_004595873.1| - 0.0044 16.4 0.0 0.0072 15.8 0.0 1.3 1 0 0 1 1 1 1 Tellurite resistance protein TehB PrmA PF06325.13 gi|336252766|ref|YP_004595873.1| - 0.0049 16.3 0.0 0.0067 15.9 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Fibrillarin PF01269.17 gi|336252766|ref|YP_004595873.1| - 0.0097 15.0 0.0 0.014 14.5 0.0 1.2 1 0 0 1 1 1 1 Fibrillarin Methyltransf_3 PF01596.17 gi|336252766|ref|YP_004595873.1| - 0.014 14.6 0.0 0.019 14.2 0.0 1.1 1 0 0 1 1 1 0 O-methyltransferase Methyltransf_18 PF12847.7 gi|336252766|ref|YP_004595873.1| - 0.045 13.7 0.0 0.07 13.1 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain MetW PF07021.12 gi|336252766|ref|YP_004595873.1| - 0.072 12.7 0.0 0.095 12.3 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Methyltransf_32 PF13679.6 gi|336252766|ref|YP_004595873.1| - 0.1 12.6 0.0 0.14 12.1 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain UPF0020 PF01170.18 gi|336252766|ref|YP_004595873.1| - 0.12 12.1 0.0 0.15 11.8 0.0 1.2 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 Pox_MCEL PF03291.16 gi|336252766|ref|YP_004595873.1| - 0.25 10.4 0.0 0.31 10.1 0.0 1.2 1 0 0 1 1 1 0 mRNA capping enzyme Beta_elim_lyase PF01212.21 gi|336252767|ref|YP_004595874.1| - 3.9e-86 289.0 0.3 4.5e-86 288.7 0.3 1.0 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|336252767|ref|YP_004595874.1| - 2.1e-05 24.0 0.1 0.0073 15.7 0.0 2.8 3 0 0 3 3 3 2 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|336252767|ref|YP_004595874.1| - 0.28 9.7 0.5 0.39 9.2 0.0 1.5 2 0 0 2 2 2 0 Cys/Met metabolism PLP-dependent enzyme DUF4083 PF13314.6 gi|336252768|ref|YP_004595875.1| - 0.095 12.7 4.0 0.12 12.4 4.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4083) Metallophos_2 PF12850.7 gi|336252769|ref|YP_004595876.1| - 9.5e-26 91.0 1.3 1.2e-25 90.7 1.3 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|336252769|ref|YP_004595876.1| - 2.9e-06 27.9 0.5 0.013 16.0 0.0 2.2 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase Cation_efflux PF01545.21 gi|336252770|ref|YP_004595877.1| - 6.8e-28 97.8 5.7 1.1e-27 97.0 5.7 1.4 1 1 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|336252770|ref|YP_004595877.1| - 5.5e-07 29.6 0.0 9.6e-07 28.8 0.0 1.4 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter PKcGMP_CC PF16808.5 gi|336252770|ref|YP_004595877.1| - 0.13 12.2 1.9 0.22 11.4 1.9 1.3 1 0 0 1 1 1 0 Coiled-coil N-terminus of cGMP-dependent protein kinase Helicase_C_2 PF13307.6 gi|336252772|ref|YP_004595879.1| - 4.5e-29 101.8 0.0 1.3e-28 100.3 0.0 1.8 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.15 gi|336252772|ref|YP_004595879.1| - 2e-20 73.1 0.2 4.2e-20 72.1 0.2 1.5 1 0 0 1 1 1 1 DEAD_2 DEAD PF00270.29 gi|336252772|ref|YP_004595879.1| - 2.3e-07 30.8 0.1 0.00046 20.0 0.0 3.3 3 0 0 3 3 3 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|336252772|ref|YP_004595879.1| - 5.1e-07 29.9 0.1 4.1e-05 23.7 0.1 2.3 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit ATPase PF06745.13 gi|336252772|ref|YP_004595879.1| - 0.00042 19.7 0.0 0.00084 18.8 0.0 1.6 1 0 0 1 1 1 1 KaiC HBB PF06777.11 gi|336252772|ref|YP_004595879.1| - 0.00058 19.6 0.0 0.0014 18.3 0.0 1.7 1 0 0 1 1 1 1 Helical and beta-bridge domain AAA_25 PF13481.6 gi|336252772|ref|YP_004595879.1| - 0.0061 16.2 2.0 0.62 9.6 0.0 3.9 4 0 0 4 4 4 1 AAA domain PhoH PF02562.16 gi|336252772|ref|YP_004595879.1| - 0.023 14.2 0.0 0.068 12.6 0.0 1.7 2 0 0 2 2 2 0 PhoH-like protein DUF815 PF05673.13 gi|336252772|ref|YP_004595879.1| - 0.027 13.6 0.0 0.052 12.7 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_34 PF13872.6 gi|336252772|ref|YP_004595879.1| - 0.029 13.3 0.0 0.061 12.2 0.0 1.5 1 0 0 1 1 1 0 P-loop containing NTP hydrolase pore-1 DUF2075 PF09848.9 gi|336252772|ref|YP_004595879.1| - 0.046 13.0 0.3 1.9 7.7 0.0 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) ArsA_ATPase PF02374.15 gi|336252772|ref|YP_004595879.1| - 0.18 10.9 0.3 0.48 9.5 0.1 1.8 2 1 0 2 2 2 0 Anion-transporting ATPase CENP-H PF05837.12 gi|336252772|ref|YP_004595879.1| - 0.8 10.1 3.8 2.7 8.4 3.8 1.8 1 0 0 1 1 1 0 Centromere protein H (CENP-H) DUF3247 PF11607.8 gi|336252773|ref|YP_004595880.1| - 0.024 14.9 0.1 0.031 14.5 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3247) Rhodanese PF00581.20 gi|336252774|ref|YP_004595881.1| - 1.7e-15 57.4 0.1 2.2e-15 57.1 0.1 1.1 1 0 0 1 1 1 1 Rhodanese-like domain TusA PF01206.17 gi|336252775|ref|YP_004595882.1| - 5e-12 45.5 0.0 7.2e-12 45.0 0.0 1.2 1 0 0 1 1 1 1 Sulfurtransferase TusA Sulf_transp PF04143.14 gi|336252776|ref|YP_004595883.1| - 4.4e-57 194.0 31.5 4.4e-57 194.0 31.5 1.9 2 1 0 2 2 2 1 Sulphur transport 2_5_RNA_ligase2 PF13563.6 gi|336252777|ref|YP_004595884.1| - 1.5e-16 60.7 0.1 1.8e-16 60.4 0.1 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily LigT_PEase PF02834.16 gi|336252777|ref|YP_004595884.1| - 1.2e-07 31.8 0.0 0.00014 21.9 0.0 2.4 3 0 0 3 3 3 2 LigT like Phosphoesterase DUF2244 PF10003.9 gi|336252778|ref|YP_004595885.1| - 0.062 13.0 3.1 0.066 12.9 3.1 1.0 1 0 0 1 1 1 0 Integral membrane protein (DUF2244) DUF1654 PF07867.11 gi|336252779|ref|YP_004595886.1| - 0.035 13.8 0.4 0.12 12.1 0.4 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF1654) DUF4897 PF16238.5 gi|336252779|ref|YP_004595886.1| - 0.042 13.7 0.1 0.066 13.0 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4897) Trp_oprn_chp PF09534.10 gi|336252779|ref|YP_004595886.1| - 0.042 13.6 2.3 3.1 7.6 0.3 2.3 2 0 0 2 2 2 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) DUF3117 PF11314.8 gi|336252779|ref|YP_004595886.1| - 0.11 12.4 1.0 0.87 9.4 0.5 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3117) Arginosuc_synth PF00764.19 gi|336252780|ref|YP_004595887.1| - 4.3e-142 474.0 0.0 5e-142 473.8 0.0 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase QueC PF06508.13 gi|336252780|ref|YP_004595887.1| - 2.6e-05 23.8 0.0 5e-05 22.9 0.0 1.4 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|336252780|ref|YP_004595887.1| - 0.0026 16.6 0.0 0.0041 15.9 0.0 1.4 1 0 0 1 1 1 1 tRNA methyl transferase Asn_synthase PF00733.21 gi|336252780|ref|YP_004595887.1| - 0.0043 16.8 0.6 0.019 14.7 0.0 2.0 2 0 0 2 2 2 1 Asparagine synthase NAD_synthase PF02540.17 gi|336252780|ref|YP_004595887.1| - 0.03 13.4 0.0 0.047 12.8 0.0 1.3 1 0 0 1 1 1 0 NAD synthase SMC_hinge PF06470.13 gi|336252780|ref|YP_004595887.1| - 0.25 11.6 1.4 2.6 8.4 0.1 2.7 3 0 0 3 3 3 0 SMC proteins Flexible Hinge Domain Lyase_1 PF00206.20 gi|336252781|ref|YP_004595888.1| - 7.2e-59 199.7 0.1 1.6e-58 198.5 0.0 1.6 2 0 0 2 2 2 1 Lyase ASL_C2 PF14698.6 gi|336252781|ref|YP_004595888.1| - 1.3e-16 61.0 0.6 1.3e-16 61.0 0.6 2.9 4 0 0 4 4 4 1 Argininosuccinate lyase C-terminal Phage_fiber_2 PF03406.13 gi|336252781|ref|YP_004595888.1| - 0.055 13.0 0.0 0.25 10.9 0.0 2.2 1 0 0 1 1 1 0 Phage tail fibre repeat DNA_RNApol_7kD PF03604.13 gi|336252782|ref|YP_004595889.1| - 0.0014 18.2 1.8 0.0042 16.7 1.8 1.7 1 1 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_2 PF13240.6 gi|336252782|ref|YP_004595889.1| - 0.0037 16.9 0.5 2.3 8.1 0.0 2.2 2 0 0 2 2 2 2 zinc-ribbon domain Lar_restr_allev PF14354.6 gi|336252782|ref|YP_004595889.1| - 0.0087 16.4 0.3 0.013 15.9 0.3 1.3 1 1 0 1 1 1 1 Restriction alleviation protein Lar ADD_ATRX PF17981.1 gi|336252782|ref|YP_004595889.1| - 0.014 15.2 1.0 0.052 13.4 0.0 2.0 1 1 1 2 2 2 0 Cysteine Rich ADD domain PhnA_Zn_Ribbon PF08274.12 gi|336252782|ref|YP_004595889.1| - 0.015 15.3 1.3 0.061 13.3 1.4 1.8 1 1 1 2 2 2 0 PhnA Zinc-Ribbon zf-ribbon_3 PF13248.6 gi|336252782|ref|YP_004595889.1| - 0.019 14.3 0.2 0.91 9.0 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.7 gi|336252782|ref|YP_004595889.1| - 0.026 14.5 0.8 0.28 11.3 0.8 1.9 1 1 0 1 1 1 0 Double zinc ribbon HypA PF01155.19 gi|336252782|ref|YP_004595889.1| - 0.035 14.1 0.3 0.036 14.1 0.3 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-HYPF PF07503.12 gi|336252782|ref|YP_004595889.1| - 0.04 13.7 0.0 6.8 6.6 0.0 2.1 2 0 0 2 2 2 0 HypF finger TF_Zn_Ribbon PF08271.12 gi|336252782|ref|YP_004595889.1| - 0.042 13.4 3.6 0.057 12.9 3.6 1.3 1 0 0 1 1 1 0 TFIIB zinc-binding Zn-ribbon_8 PF09723.10 gi|336252782|ref|YP_004595889.1| - 0.064 13.4 2.4 0.22 11.7 2.3 1.8 1 1 1 2 2 2 0 Zinc ribbon domain RNA_POL_M_15KD PF02150.16 gi|336252782|ref|YP_004595889.1| - 0.07 13.0 1.5 0.38 10.7 1.5 1.9 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit zf_UBZ PF18439.1 gi|336252782|ref|YP_004595889.1| - 0.073 12.7 0.9 4.6 6.9 0.1 2.3 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger YhfH PF14149.6 gi|336252782|ref|YP_004595889.1| - 0.086 12.8 2.2 7.3 6.7 0.1 2.2 2 0 0 2 2 2 0 YhfH-like protein Desulfoferrod_N PF06397.12 gi|336252782|ref|YP_004595889.1| - 0.1 12.2 2.3 0.89 9.2 0.2 2.1 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain DUF1451 PF07295.11 gi|336252782|ref|YP_004595889.1| - 0.12 12.4 0.9 0.15 12.1 0.9 1.1 1 0 0 1 1 1 0 Zinc-ribbon containing domain zf-C3HC PF07967.13 gi|336252782|ref|YP_004595889.1| - 0.27 11.3 1.2 2 8.5 0.1 2.0 1 1 1 2 2 2 0 C3HC zinc finger-like Prok-RING_1 PF14446.6 gi|336252782|ref|YP_004595889.1| - 0.65 10.0 4.9 1.2 9.2 4.9 1.4 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 Eapp_C PF10238.9 gi|336252782|ref|YP_004595889.1| - 1.3 9.1 4.1 6.6 6.8 0.4 2.0 1 1 1 2 2 2 0 E2F-associated phosphoprotein RimK PF08443.11 gi|336252783|ref|YP_004595890.1| - 1.5e-27 96.4 0.0 1.9e-27 96.1 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_3 PF02655.14 gi|336252783|ref|YP_004595890.1| - 1e-11 45.2 0.0 1.4e-11 44.7 0.0 1.1 1 0 0 1 1 1 1 ATP-grasp domain GSH-S_ATP PF02955.16 gi|336252783|ref|YP_004595890.1| - 3.3e-08 33.1 0.0 4.9e-08 32.6 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp PF02222.22 gi|336252783|ref|YP_004595890.1| - 2.1e-07 30.7 0.3 4.5e-06 26.3 0.1 2.7 2 1 0 2 2 2 1 ATP-grasp domain ATP-grasp_5 PF13549.6 gi|336252783|ref|YP_004595890.1| - 4.2e-06 26.4 0.1 0.00012 21.6 0.0 2.6 1 1 1 2 2 2 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|336252783|ref|YP_004595890.1| - 6.9e-06 25.7 0.0 1.3e-05 24.8 0.0 1.7 1 1 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATPgrasp_ST PF14397.6 gi|336252783|ref|YP_004595890.1| - 2e-05 24.0 0.0 0.0053 16.1 0.0 2.5 3 1 0 3 3 3 2 Sugar-transfer associated ATP-grasp Rimk_N PF18030.1 gi|336252783|ref|YP_004595890.1| - 0.044 14.2 0.0 0.16 12.4 0.0 2.0 1 1 0 1 1 1 0 RimK PreATP-grasp domain DUF287 PF03384.14 gi|336252783|ref|YP_004595890.1| - 0.46 10.9 2.3 0.86 10.0 0.3 2.5 3 0 0 3 3 3 0 Drosophila protein of unknown function, DUF287 Semialdhyde_dh PF01118.24 gi|336252784|ref|YP_004595891.1| - 1.6e-26 93.1 0.0 3.6e-26 92.0 0.0 1.6 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 gi|336252784|ref|YP_004595891.1| - 5.3e-08 33.2 0.0 8.8e-08 32.4 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain AA_kinase PF00696.28 gi|336252785|ref|YP_004595892.1| - 1.3e-32 113.4 4.8 1.5e-32 113.1 4.8 1.1 1 0 0 1 1 1 1 Amino acid kinase family Aminotran_3 PF00202.21 gi|336252786|ref|YP_004595893.1| - 1.9e-101 339.7 0.0 2.6e-101 339.2 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 gi|336252786|ref|YP_004595893.1| - 0.0026 17.0 0.0 0.0036 16.5 0.0 1.3 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|336252786|ref|YP_004595893.1| - 0.025 13.8 0.0 0.041 13.1 0.0 1.3 1 0 0 1 1 1 0 Beta-eliminating lyase Cupin_6 PF12852.7 gi|336252786|ref|YP_004595893.1| - 0.028 14.1 0.5 0.4 10.4 0.0 2.2 2 0 0 2 2 2 0 Cupin Asparaginase_C PF17763.1 gi|336252786|ref|YP_004595893.1| - 0.11 12.7 0.0 0.62 10.3 0.0 2.0 2 0 0 2 2 2 0 Glutaminase/Asparaginase C-terminal domain PP2C_2 PF13672.6 gi|336252786|ref|YP_004595893.1| - 0.45 10.1 3.3 0.91 9.1 0.3 2.6 3 0 0 3 3 3 0 Protein phosphatase 2C Peptidase_M20 PF01546.28 gi|336252787|ref|YP_004595894.1| - 1.6e-24 86.7 0.8 2.3e-24 86.3 0.8 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|336252787|ref|YP_004595894.1| - 6.5e-06 26.0 0.0 1.3e-05 25.0 0.0 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|336252787|ref|YP_004595894.1| - 0.026 14.2 0.3 0.32 10.7 0.2 2.2 1 1 0 1 1 1 0 Peptidase family M28 OTCace_N PF02729.21 gi|336252788|ref|YP_004595895.1| - 6.4e-53 178.8 0.0 9.7e-53 178.2 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.24 gi|336252788|ref|YP_004595895.1| - 4.5e-52 176.3 0.0 6.7e-52 175.7 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain PALP PF00291.25 gi|336252789|ref|YP_004595896.1| - 9.1e-71 238.7 4.7 1.1e-70 238.4 4.7 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme C1_2 PF03107.16 gi|336252789|ref|YP_004595896.1| - 0.12 12.7 0.1 0.19 12.1 0.1 1.3 1 0 0 1 1 1 0 C1 domain CENP-F_leu_zip PF10473.9 gi|336252790|ref|YP_004595897.1| - 0.0052 16.8 0.9 0.0079 16.2 0.9 1.2 1 0 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 GATase PF00117.28 gi|336252791|ref|YP_004595898.1| - 4.2e-22 78.8 0.0 5.8e-22 78.4 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|336252791|ref|YP_004595898.1| - 5e-07 29.7 0.2 1e-05 25.4 0.2 2.3 1 1 0 1 1 1 1 Peptidase C26 HTS PF04204.16 gi|336252791|ref|YP_004595898.1| - 0.0012 17.8 0.0 0.011 14.7 0.0 2.3 1 1 0 1 1 1 1 Homoserine O-succinyltransferase DJ-1_PfpI PF01965.24 gi|336252791|ref|YP_004595898.1| - 0.029 14.2 0.0 0.11 12.3 0.0 1.8 2 0 0 2 2 2 0 DJ-1/PfpI family GATase_3 PF07685.14 gi|336252791|ref|YP_004595898.1| - 0.14 11.7 0.0 0.26 10.9 0.0 1.5 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain AMP-binding PF00501.28 gi|336252792|ref|YP_004595899.1| - 9.6e-40 136.4 0.0 1.7e-39 135.6 0.0 1.4 1 1 0 1 1 1 1 AMP-binding enzyme FeoA PF04023.14 gi|336252792|ref|YP_004595899.1| - 0.054 13.8 0.0 0.34 11.2 0.0 2.2 2 0 0 2 2 2 0 FeoA domain Abhydrolase_1 PF00561.20 gi|336252793|ref|YP_004595900.1| - 4.5e-17 62.5 0.0 7.5e-10 38.9 0.0 2.1 2 0 0 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|336252793|ref|YP_004595900.1| - 9.9e-15 55.7 12.6 1.2e-14 55.5 12.6 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|336252793|ref|YP_004595900.1| - 9.4e-08 31.6 0.0 0.0016 17.8 0.0 2.0 2 0 0 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_4 PF08386.10 gi|336252793|ref|YP_004595900.1| - 0.00031 20.8 0.0 0.00056 20.0 0.0 1.4 1 0 0 1 1 1 1 TAP-like protein tRNA-synt_2c PF01411.19 gi|336252794|ref|YP_004595901.1| - 5.6e-117 391.6 0.0 7e-117 391.2 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) DHHA1 PF02272.19 gi|336252794|ref|YP_004595901.1| - 4.1e-17 62.9 4.1 1.1e-16 61.6 4.1 1.8 1 0 0 1 1 1 1 DHHA1 domain tRNA_SAD PF07973.14 gi|336252794|ref|YP_004595901.1| - 2e-12 47.0 1.1 2e-12 47.0 1.1 1.8 2 0 0 2 2 2 1 Threonyl and Alanyl tRNA synthetase second additional domain GAF_2 PF13185.6 gi|336252795|ref|YP_004595902.1| - 9e-12 45.5 0.4 9e-12 45.5 0.4 4.5 5 1 0 5 5 5 1 GAF domain GAF PF01590.26 gi|336252795|ref|YP_004595902.1| - 1.1e-05 26.1 0.1 3.7e-05 24.4 0.1 2.0 1 0 0 1 1 1 1 GAF domain PAS_4 PF08448.10 gi|336252795|ref|YP_004595902.1| - 0.00067 19.9 0.9 0.00067 19.9 0.9 3.3 3 1 0 3 3 3 1 PAS fold TMF_TATA_bd PF12325.8 gi|336252795|ref|YP_004595902.1| - 0.01 16.0 3.0 0.062 13.5 0.3 2.5 2 0 0 2 2 2 0 TATA element modulatory factor 1 TATA binding GAF_3 PF13492.6 gi|336252795|ref|YP_004595902.1| - 0.085 13.2 0.4 4.3 7.7 0.0 2.9 2 0 0 2 2 2 0 GAF domain Rep_fac_C PF08542.11 gi|336252796|ref|YP_004595903.1| - 3.9e-23 81.7 0.0 9.9e-23 80.4 0.0 1.7 1 0 0 1 1 1 1 Replication factor C C-terminal domain AAA PF00004.29 gi|336252796|ref|YP_004595903.1| - 6.5e-20 71.9 0.1 1.2e-17 64.6 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.6 gi|336252796|ref|YP_004595903.1| - 1.9e-15 57.1 0.0 3.5e-11 43.1 0.0 2.2 1 1 1 2 2 2 2 DNA polymerase III, delta subunit Rad17 PF03215.15 gi|336252796|ref|YP_004595903.1| - 6.4e-07 29.5 0.0 1.5e-06 28.2 0.0 1.6 2 0 0 2 2 2 1 Rad17 P-loop domain AAA_16 PF13191.6 gi|336252796|ref|YP_004595903.1| - 1.1e-06 29.2 0.4 0.0026 18.2 0.0 2.9 2 2 1 3 3 3 2 AAA ATPase domain AAA_assoc_2 PF16193.5 gi|336252796|ref|YP_004595903.1| - 1.2e-06 28.8 1.0 4.2e-06 27.0 0.4 2.2 2 1 0 2 2 1 1 AAA C-terminal domain AAA_14 PF13173.6 gi|336252796|ref|YP_004595903.1| - 2.1e-06 27.8 0.1 1.2e-05 25.3 0.0 2.0 1 1 1 2 2 2 1 AAA domain RuvB_N PF05496.12 gi|336252796|ref|YP_004595903.1| - 3.1e-06 27.0 0.3 4e-05 23.4 0.0 2.5 2 1 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain DNA_pol3_delta PF06144.13 gi|336252796|ref|YP_004595903.1| - 3.6e-05 23.6 0.0 7.7e-05 22.5 0.0 1.5 1 0 0 1 1 1 1 DNA polymerase III, delta subunit AAA_22 PF13401.6 gi|336252796|ref|YP_004595903.1| - 3.8e-05 24.0 0.1 0.47 10.7 0.0 2.5 1 1 1 2 2 2 2 AAA domain Sigma54_activat PF00158.26 gi|336252796|ref|YP_004595903.1| - 0.00033 20.4 0.0 0.019 14.7 0.0 2.5 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_3 PF07726.11 gi|336252796|ref|YP_004595903.1| - 0.0005 19.9 0.0 0.0031 17.4 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 gi|336252796|ref|YP_004595903.1| - 0.00052 20.6 0.0 0.002 18.7 0.0 2.0 2 1 1 3 3 1 1 AAA domain AAA_5 PF07728.14 gi|336252796|ref|YP_004595903.1| - 0.00059 19.9 0.0 0.011 15.7 0.0 2.8 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.21 gi|336252796|ref|YP_004595903.1| - 0.00095 18.6 0.0 0.17 11.3 0.0 2.3 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_7 PF12775.7 gi|336252796|ref|YP_004595903.1| - 0.0011 18.5 0.0 0.0019 17.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing dynein motor region ResIII PF04851.15 gi|336252796|ref|YP_004595903.1| - 0.0013 18.7 0.0 0.008 16.2 0.0 2.0 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit PhoH PF02562.16 gi|336252796|ref|YP_004595903.1| - 0.0047 16.4 0.0 0.2 11.1 0.0 2.3 2 0 0 2 2 2 1 PhoH-like protein Viral_helicase1 PF01443.18 gi|336252796|ref|YP_004595903.1| - 0.0066 16.2 0.0 0.013 15.3 0.0 1.4 1 0 0 1 1 1 1 Viral (Superfamily 1) RNA helicase AAA_30 PF13604.6 gi|336252796|ref|YP_004595903.1| - 0.0074 16.0 0.9 0.016 14.9 0.1 2.0 2 1 0 2 2 2 1 AAA domain IstB_IS21 PF01695.17 gi|336252796|ref|YP_004595903.1| - 0.009 15.8 0.0 0.022 14.5 0.0 1.7 1 0 0 1 1 1 1 IstB-like ATP binding protein RNA_helicase PF00910.22 gi|336252796|ref|YP_004595903.1| - 0.016 15.6 0.0 0.037 14.4 0.0 1.7 1 1 0 1 1 1 0 RNA helicase TIP49 PF06068.13 gi|336252796|ref|YP_004595903.1| - 0.017 14.4 0.0 0.06 12.5 0.0 1.9 2 0 0 2 2 2 0 TIP49 P-loop domain DEAD PF00270.29 gi|336252796|ref|YP_004595903.1| - 0.02 14.7 0.8 9.8 5.9 0.0 3.0 2 1 0 3 3 3 0 DEAD/DEAH box helicase AAA_25 PF13481.6 gi|336252796|ref|YP_004595903.1| - 0.03 13.9 0.3 0.1 12.2 0.0 2.1 1 1 1 2 2 2 0 AAA domain AAA_2 PF07724.14 gi|336252796|ref|YP_004595903.1| - 0.032 14.4 0.0 0.1 12.7 0.0 1.9 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) NACHT PF05729.12 gi|336252796|ref|YP_004595903.1| - 0.034 14.0 0.0 0.13 12.2 0.0 1.9 2 0 0 2 2 2 0 NACHT domain AAA_33 PF13671.6 gi|336252796|ref|YP_004595903.1| - 0.038 14.2 0.1 0.11 12.6 0.1 1.9 2 1 0 2 2 1 0 AAA domain Sigma54_activ_2 PF14532.6 gi|336252796|ref|YP_004595903.1| - 0.041 14.0 0.0 0.12 12.5 0.0 1.7 1 1 0 1 1 1 0 Sigma-54 interaction domain T2SSE PF00437.20 gi|336252796|ref|YP_004595903.1| - 0.044 12.8 0.0 0.089 11.8 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_11 PF13086.6 gi|336252796|ref|YP_004595903.1| - 0.098 12.4 0.0 0.13 12.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain TPR_14 PF13428.6 gi|336252796|ref|YP_004595903.1| - 0.12 13.2 2.2 28 5.9 0.1 3.7 3 0 0 3 3 2 0 Tetratricopeptide repeat TetR_C_12 PF16914.5 gi|336252796|ref|YP_004595903.1| - 0.13 12.4 0.3 0.33 11.1 0.1 1.8 2 0 0 2 2 1 0 Bacterial transcriptional repressor C-terminal TniB PF05621.11 gi|336252796|ref|YP_004595903.1| - 0.14 11.6 0.0 0.71 9.3 0.0 2.0 2 0 0 2 2 2 0 Bacterial TniB protein NB-ARC PF00931.22 gi|336252796|ref|YP_004595903.1| - 0.14 11.3 0.0 0.23 10.6 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain Torsin PF06309.11 gi|336252796|ref|YP_004595903.1| - 0.18 11.9 0.0 0.34 11.0 0.0 1.4 1 0 0 1 1 1 0 Torsin TPR_6 PF13174.6 gi|336252796|ref|YP_004595903.1| - 7.6 7.4 6.1 86 4.1 0.5 3.7 4 0 0 4 4 3 0 Tetratricopeptide repeat Bactofilin PF04519.13 gi|336252797|ref|YP_004595904.1| - 2.8e-09 37.2 21.3 2.6e-07 30.8 9.5 2.6 1 1 1 2 2 2 2 Polymer-forming cytoskeletal FapA PF03961.13 gi|336252797|ref|YP_004595904.1| - 0.013 14.1 11.0 0.019 13.6 11.0 1.2 1 0 0 1 1 1 0 Flagellar Assembly Protein A Phage_spike PF18715.1 gi|336252797|ref|YP_004595904.1| - 0.32 11.1 0.2 0.32 11.1 0.2 4.3 1 1 1 2 2 2 0 Phage spike trimer Ribonuc_L-PSP PF01042.21 gi|336252799|ref|YP_004595906.1| - 1.6e-39 134.7 0.1 1.8e-39 134.5 0.1 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP YjgF_endoribonc PF14588.6 gi|336252799|ref|YP_004595906.1| - 0.0095 16.1 0.0 0.012 15.8 0.0 1.2 1 0 0 1 1 1 1 YjgF/chorismate_mutase-like, putative endoribonuclease SHMT PF00464.19 gi|336252800|ref|YP_004595907.1| - 2.6e-155 516.9 0.0 3.1e-155 516.7 0.0 1.0 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_1_2 PF00155.21 gi|336252800|ref|YP_004595907.1| - 5.9e-09 35.6 0.0 9.1e-09 34.9 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|336252800|ref|YP_004595907.1| - 1.6e-05 24.4 0.0 0.0003 20.2 0.0 2.1 1 1 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|336252800|ref|YP_004595907.1| - 0.15 11.3 0.3 0.21 10.9 0.3 1.2 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family BCCT PF02028.17 gi|336252801|ref|YP_004595908.1| - 2.5e-155 517.6 47.4 3.2e-155 517.3 47.4 1.0 1 0 0 1 1 1 1 BCCT, betaine/carnitine/choline family transporter PALP PF00291.25 gi|336252802|ref|YP_004595909.1| - 3.4e-86 289.3 8.2 5.1e-86 288.7 8.2 1.2 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACT PF01842.25 gi|336252802|ref|YP_004595909.1| - 0.00017 21.3 0.1 0.00017 21.3 0.1 3.2 3 0 0 3 3 3 1 ACT domain ACT_4 PF13291.6 gi|336252802|ref|YP_004595909.1| - 0.0019 18.8 0.0 0.013 16.1 0.0 2.5 2 0 0 2 2 2 1 ACT domain GCV_T PF01571.21 gi|336252803|ref|YP_004595910.1| - 1.3e-75 254.1 0.0 2.2e-75 253.4 0.0 1.3 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain DAO PF01266.24 gi|336252803|ref|YP_004595910.1| - 1.1e-51 176.5 1.0 1.9e-51 175.7 1.0 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAO_M PF16350.5 gi|336252803|ref|YP_004595910.1| - 3.7e-16 59.2 0.4 9.3e-16 57.9 0.4 1.8 1 0 0 1 1 1 1 FAD dependent oxidoreductase central domain GCV_T_C PF08669.11 gi|336252803|ref|YP_004595910.1| - 1.8e-15 56.6 0.1 4.8e-15 55.2 0.1 1.8 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain FAD_binding_2 PF00890.24 gi|336252803|ref|YP_004595910.1| - 1.3e-07 31.1 2.5 0.00043 19.5 0.3 2.6 3 0 0 3 3 3 2 FAD binding domain SoxG PF04268.12 gi|336252803|ref|YP_004595910.1| - 9.5e-07 29.1 0.0 6.6e-06 26.3 0.0 2.1 1 1 1 2 2 2 1 Sarcosine oxidase, gamma subunit family NAD_binding_8 PF13450.6 gi|336252803|ref|YP_004595910.1| - 1.5e-06 28.3 0.6 1.6e-05 25.0 0.2 3.0 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 gi|336252803|ref|YP_004595910.1| - 1.9e-05 24.1 3.5 0.012 14.8 0.2 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|336252803|ref|YP_004595910.1| - 3e-05 24.5 1.3 0.015 15.8 0.4 2.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|336252803|ref|YP_004595910.1| - 0.00044 19.6 0.2 0.046 13.0 0.0 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase ThiF PF00899.21 gi|336252803|ref|YP_004595910.1| - 0.0097 15.3 0.2 0.017 14.5 0.2 1.2 1 0 0 1 1 1 1 ThiF family NAD_binding_9 PF13454.6 gi|336252803|ref|YP_004595910.1| - 0.039 13.9 3.2 3.5 7.6 0.1 2.7 3 0 0 3 3 2 0 FAD-NAD(P)-binding ApbA PF02558.16 gi|336252803|ref|YP_004595910.1| - 0.057 13.1 0.1 0.11 12.2 0.1 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Thi4 PF01946.17 gi|336252803|ref|YP_004595910.1| - 0.08 12.2 0.2 0.91 8.7 0.1 2.1 2 0 0 2 2 2 0 Thi4 family HI0933_like PF03486.14 gi|336252803|ref|YP_004595910.1| - 0.081 11.6 0.2 3.7 6.2 0.0 2.1 2 0 0 2 2 2 0 HI0933-like protein GIDA PF01134.22 gi|336252803|ref|YP_004595910.1| - 0.098 11.7 1.4 0.39 9.7 0.3 2.1 2 0 0 2 2 2 0 Glucose inhibited division protein A AlaDh_PNT_C PF01262.21 gi|336252803|ref|YP_004595910.1| - 0.17 11.1 0.1 0.35 10.1 0.1 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain FAD_oxidored PF12831.7 gi|336252803|ref|YP_004595910.1| - 0.34 10.2 3.5 0.23 10.8 0.7 2.0 2 1 0 2 2 2 0 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|336252803|ref|YP_004595910.1| - 0.36 10.0 2.8 1.7 7.8 0.2 2.2 2 0 0 2 2 2 0 FAD binding domain EamA PF00892.20 gi|336252804|ref|YP_004595911.1| - 1.8e-15 57.3 16.7 1.9e-15 57.2 16.7 1.0 1 0 0 1 1 1 1 EamA-like transporter family DAO PF01266.24 gi|336252805|ref|YP_004595912.1| - 1e-50 173.3 0.2 1.2e-50 173.1 0.2 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|336252805|ref|YP_004595912.1| - 0.00047 19.5 0.0 0.0042 16.4 0.0 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|336252805|ref|YP_004595912.1| - 0.0012 17.7 0.0 0.022 13.5 0.0 2.1 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_3 PF13738.6 gi|336252805|ref|YP_004595912.1| - 0.0022 17.3 0.0 0.024 13.9 0.0 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase SUKH-4 PF14435.6 gi|336252805|ref|YP_004595912.1| - 0.0031 17.6 0.0 0.0068 16.5 0.0 1.6 1 0 0 1 1 1 1 SUKH-4 immunity protein FAD_binding_3 PF01494.19 gi|336252805|ref|YP_004595912.1| - 0.013 14.7 0.3 0.022 14.0 0.3 1.3 1 0 0 1 1 1 0 FAD binding domain 3HCDH_N PF02737.18 gi|336252805|ref|YP_004595912.1| - 0.041 13.8 0.2 0.072 13.0 0.2 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.16 gi|336252805|ref|YP_004595912.1| - 0.045 13.4 0.3 0.075 12.7 0.3 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NAD_binding_9 PF13454.6 gi|336252805|ref|YP_004595912.1| - 0.085 12.9 0.2 0.085 12.9 0.2 2.6 3 0 0 3 3 3 0 FAD-NAD(P)-binding Amino_oxidase PF01593.24 gi|336252805|ref|YP_004595912.1| - 0.13 11.5 0.0 0.21 10.9 0.0 1.4 1 0 0 1 1 1 0 Flavin containing amine oxidoreductase DUF1990 PF09348.10 gi|336252805|ref|YP_004595912.1| - 0.14 12.2 0.1 0.5 10.4 0.1 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF1990) FAD_binding_2 PF00890.24 gi|336252805|ref|YP_004595912.1| - 0.14 11.2 0.7 0.62 9.1 0.1 1.9 2 0 0 2 2 2 0 FAD binding domain Thi4 PF01946.17 gi|336252805|ref|YP_004595912.1| - 0.15 11.3 0.4 0.29 10.3 0.0 1.6 2 0 0 2 2 2 0 Thi4 family Ring_hydroxyl_A PF00848.19 gi|336252806|ref|YP_004595913.1| - 1.7e-18 67.4 7.1 1.5e-16 61.0 7.1 2.2 1 1 0 1 1 1 1 Ring hydroxylating alpha subunit (catalytic domain) Rieske PF00355.26 gi|336252806|ref|YP_004595913.1| - 4.4e-16 58.6 0.0 9.5e-16 57.5 0.0 1.5 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.6 gi|336252806|ref|YP_004595913.1| - 0.12 12.3 0.0 0.34 10.9 0.0 1.7 2 0 0 2 2 2 0 Rieske-like [2Fe-2S] domain HTH_10 PF04967.12 gi|336252808|ref|YP_004595915.1| - 1.3e-15 57.0 0.0 2.1e-15 56.2 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|336252808|ref|YP_004595915.1| - 3e-10 40.2 0.7 4.2e-10 39.7 0.3 1.4 1 1 0 1 1 1 1 GAF and HTH_10 associated domain HTH_AsnC-type PF13404.6 gi|336252808|ref|YP_004595915.1| - 0.0014 18.4 0.1 0.0033 17.2 0.1 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|336252808|ref|YP_004595915.1| - 0.008 15.8 0.0 0.096 12.4 0.0 2.4 1 1 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 gi|336252808|ref|YP_004595915.1| - 0.0091 15.5 0.1 0.024 14.2 0.1 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_24 PF13412.6 gi|336252808|ref|YP_004595915.1| - 0.013 15.1 0.0 0.024 14.2 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_3 PF01381.22 gi|336252808|ref|YP_004595915.1| - 0.16 12.1 0.0 0.32 11.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix Homeodomain PF00046.29 gi|336252808|ref|YP_004595915.1| - 0.19 11.6 0.0 0.49 10.3 0.0 1.6 1 0 0 1 1 1 0 Homeodomain AhpC-TSA PF00578.21 gi|336252809|ref|YP_004595916.1| - 1.1e-16 60.8 0.0 1.5e-16 60.4 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|336252809|ref|YP_004595916.1| - 8.4e-09 35.3 0.0 1.1e-08 35.0 0.0 1.2 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.6 gi|336252809|ref|YP_004595916.1| - 2e-05 24.7 0.0 2.8e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA antioxidant enzyme Acetyltransf_7 PF13508.7 gi|336252810|ref|YP_004595917.1| - 2.5e-09 37.4 1.2 8.4e-09 35.7 1.2 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|336252810|ref|YP_004595917.1| - 3.5e-08 33.7 2.5 1.9e-07 31.3 2.5 1.8 1 1 1 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|336252810|ref|YP_004595917.1| - 1.4e-06 28.3 0.0 1.7e-06 28.0 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|336252810|ref|YP_004595917.1| - 0.0019 18.1 2.1 0.011 15.7 1.3 2.3 1 1 1 2 2 2 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|336252810|ref|YP_004595917.1| - 0.0046 17.0 0.7 0.022 14.8 0.7 2.2 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|336252810|ref|YP_004595917.1| - 0.096 12.8 0.2 0.2 11.8 0.1 1.6 1 1 0 1 1 1 0 GCN5-related N-acetyl-transferase PanZ PF12568.8 gi|336252810|ref|YP_004595917.1| - 0.48 10.2 5.9 1.1 9.0 5.8 1.6 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain, PanZ CPP1-like PF11833.8 gi|336252811|ref|YP_004595918.1| - 0.11 12.1 3.2 0.14 11.8 3.2 1.2 1 0 0 1 1 1 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like CTP_transf_like PF01467.26 gi|336252812|ref|YP_004595919.1| - 1.1e-15 58.1 0.0 1.3e-15 57.8 0.0 1.1 1 0 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 gi|336252812|ref|YP_004595919.1| - 0.025 14.5 0.0 0.057 13.3 0.0 1.6 2 0 0 2 2 2 0 FAD synthetase SHOCT PF09851.9 gi|336252813|ref|YP_004595920.1| - 7.6e-05 22.3 4.1 0.00013 21.5 2.4 2.1 1 1 1 2 2 2 2 Short C-terminal domain DUF1707 PF08044.11 gi|336252813|ref|YP_004595920.1| - 0.027 14.5 0.4 0.05 13.7 0.4 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1707) GvpG PF05120.12 gi|336252813|ref|YP_004595920.1| - 0.16 12.0 0.3 0.26 11.3 0.3 1.3 1 0 0 1 1 1 0 Gas vesicle protein G Helicase_C_2 PF13307.6 gi|336252814|ref|YP_004595921.1| - 2.7e-33 115.5 0.0 5.7e-33 114.5 0.0 1.4 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.15 gi|336252814|ref|YP_004595921.1| - 1.9e-06 27.6 0.0 7.1e-06 25.8 0.0 2.0 1 1 0 1 1 1 1 DEAD_2 DEAD PF00270.29 gi|336252814|ref|YP_004595921.1| - 6.6e-05 22.7 0.0 0.13 12.0 0.0 2.4 2 0 0 2 2 2 2 DEAD/DEAH box helicase ResIII PF04851.15 gi|336252814|ref|YP_004595921.1| - 0.0011 19.1 0.0 0.023 14.7 0.0 2.1 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit PhoH PF02562.16 gi|336252814|ref|YP_004595921.1| - 0.0013 18.2 0.0 0.0026 17.2 0.0 1.4 1 0 0 1 1 1 1 PhoH-like protein DUF2075 PF09848.9 gi|336252814|ref|YP_004595921.1| - 0.0045 16.3 0.0 0.036 13.3 0.0 2.0 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) HBB PF06777.11 gi|336252814|ref|YP_004595921.1| - 0.054 13.2 0.0 0.12 12.1 0.0 1.5 1 0 0 1 1 1 0 Helical and beta-bridge domain AAA_19 PF13245.6 gi|336252814|ref|YP_004595921.1| - 0.062 13.6 0.0 0.25 11.7 0.0 1.9 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|336252814|ref|YP_004595921.1| - 0.082 12.6 0.0 1.2 8.8 0.0 2.3 2 0 0 2 2 2 0 AAA domain UvrD-helicase PF00580.21 gi|336252814|ref|YP_004595921.1| - 0.19 11.2 0.0 0.29 10.6 0.0 1.2 1 0 0 1 1 1 0 UvrD/REP helicase N-terminal domain CPBP PF02517.16 gi|336252815|ref|YP_004595922.1| - 1.3e-11 44.7 7.9 1.3e-11 44.7 7.9 2.3 2 1 0 2 2 2 1 CPBP intramembrane metalloprotease DUF1684 PF07920.11 gi|336252817|ref|YP_004595924.1| - 1.5e-49 167.9 0.1 2e-49 167.5 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1684) Methyltransf_11 PF08241.12 gi|336252818|ref|YP_004595925.1| - 6.4e-24 84.4 0.0 1.1e-23 83.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|336252818|ref|YP_004595925.1| - 6.6e-20 71.6 0.0 1.3e-19 70.7 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|336252818|ref|YP_004595925.1| - 1.7e-15 57.2 0.0 2.1e-15 56.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|336252818|ref|YP_004595925.1| - 1e-13 51.4 0.0 1.3e-13 51.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|336252818|ref|YP_004595925.1| - 4.9e-11 42.4 0.0 1e-10 41.3 0.0 1.4 1 1 1 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|336252818|ref|YP_004595925.1| - 5.8e-11 43.0 0.0 9.6e-11 42.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_32 PF13679.6 gi|336252818|ref|YP_004595925.1| - 0.00013 22.0 0.0 0.00022 21.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|336252818|ref|YP_004595925.1| - 0.00015 21.1 0.0 0.00022 20.6 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MetW PF07021.12 gi|336252818|ref|YP_004595925.1| - 0.00033 20.3 0.0 0.00054 19.6 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_9 PF08003.11 gi|336252818|ref|YP_004595925.1| - 0.00043 19.3 0.0 0.00095 18.2 0.0 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF1698) MTS PF05175.14 gi|336252818|ref|YP_004595925.1| - 0.0012 18.4 0.0 0.0033 17.0 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_2 PF00891.18 gi|336252818|ref|YP_004595925.1| - 0.0022 17.3 0.0 0.0031 16.9 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase domain Methyltransf_8 PF05148.15 gi|336252818|ref|YP_004595925.1| - 0.0031 17.4 0.0 0.0099 15.7 0.0 1.7 1 1 0 1 1 1 1 Hypothetical methyltransferase PCMT PF01135.19 gi|336252818|ref|YP_004595925.1| - 0.0034 17.1 0.0 0.0059 16.4 0.0 1.6 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) N6_N4_Mtase PF01555.18 gi|336252818|ref|YP_004595925.1| - 0.0047 16.7 0.0 0.8 9.4 0.0 2.3 2 1 0 2 2 2 1 DNA methylase Fibrillarin PF01269.17 gi|336252818|ref|YP_004595925.1| - 0.02 14.0 0.0 0.034 13.2 0.0 1.3 1 0 0 1 1 1 0 Fibrillarin FtsJ PF01728.19 gi|336252818|ref|YP_004595925.1| - 0.035 14.2 0.0 0.44 10.6 0.0 2.0 1 1 0 2 2 2 0 FtsJ-like methyltransferase PrmA PF06325.13 gi|336252818|ref|YP_004595925.1| - 0.16 11.3 0.0 0.31 10.4 0.0 1.5 2 0 0 2 2 2 0 Ribosomal protein L11 methyltransferase (PrmA) ATPase PF06745.13 gi|336252819|ref|YP_004595926.1| - 0.00028 20.3 0.0 0.00037 19.9 0.0 1.1 1 0 0 1 1 1 1 KaiC SIP PF04954.13 gi|336252819|ref|YP_004595926.1| - 0.032 14.8 0.1 0.072 13.6 0.0 1.6 2 0 0 2 2 2 0 Siderophore-interacting protein Dabb PF07876.12 gi|336252819|ref|YP_004595926.1| - 0.051 14.2 0.0 0.14 12.8 0.0 1.8 1 1 0 1 1 1 0 Stress responsive A/B Barrel Domain EF-hand_5 PF13202.6 gi|336252819|ref|YP_004595926.1| - 3.3 7.3 5.8 3.4 7.3 1.7 2.9 2 0 0 2 2 2 0 EF hand DUF3515 PF12028.8 gi|336252820|ref|YP_004595927.1| - 2.2 8.0 5.4 3.3 7.4 0.3 2.9 2 2 1 3 3 3 0 Protein of unknown function (DUF3515) DUF2072 PF09845.9 gi|336252821|ref|YP_004595928.1| - 4.1e-32 111.2 4.2 5.6e-16 59.0 0.0 2.7 3 1 0 3 3 3 2 Zn-ribbon containing protein DUF1451 PF07295.11 gi|336252821|ref|YP_004595928.1| - 0.19 11.8 1.3 0.37 10.8 1.3 1.4 1 0 0 1 1 1 0 Zinc-ribbon containing domain HypA PF01155.19 gi|336252821|ref|YP_004595928.1| - 0.2 11.7 0.3 0.32 11.0 0.3 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|336252821|ref|YP_004595928.1| - 0.22 11.7 3.1 0.46 10.6 3.1 1.5 1 0 0 1 1 1 0 Zinc ribbon domain zf-C2HC_2 PF13913.6 gi|336252821|ref|YP_004595928.1| - 0.38 10.7 1.0 0.66 10.0 1.0 1.4 1 0 0 1 1 1 0 zinc-finger of a C2HC-type Anti-TRAP PF15777.5 gi|336252821|ref|YP_004595928.1| - 0.72 9.9 3.1 2 8.4 3.1 1.7 1 0 0 1 1 1 0 Tryptophan RNA-binding attenuator protein inhibitory protein zinc_ribbon_2 PF13240.6 gi|336252821|ref|YP_004595928.1| - 1.2 9.0 5.0 2.3 8.1 5.0 1.5 1 0 0 1 1 1 0 zinc-ribbon domain zf-C2H2 PF00096.26 gi|336252821|ref|YP_004595928.1| - 7.7 7.2 5.1 2.8 8.6 0.6 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type DUF2073 PF09846.9 gi|336252822|ref|YP_004595929.1| - 2.5e-45 152.7 0.5 2.9e-45 152.4 0.5 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2073) MMR_HSR1 PF01926.23 gi|336252823|ref|YP_004595930.1| - 2.7e-15 56.5 0.0 3.6e-15 56.0 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU PF00009.27 gi|336252823|ref|YP_004595930.1| - 1.4e-11 44.3 0.4 0.0001 21.9 0.0 3.2 2 2 0 2 2 2 2 Elongation factor Tu GTP binding domain Arf PF00025.21 gi|336252823|ref|YP_004595930.1| - 5.9e-08 32.4 0.1 0.00015 21.3 0.1 2.5 2 1 1 3 3 3 2 ADP-ribosylation factor family FeoB_N PF02421.18 gi|336252823|ref|YP_004595930.1| - 9.4e-06 25.2 0.1 6.3e-05 22.5 0.1 2.2 1 1 0 1 1 1 1 Ferrous iron transport protein B RsgA_GTPase PF03193.16 gi|336252823|ref|YP_004595930.1| - 1.7e-05 24.8 0.0 0.16 11.9 0.0 2.2 2 0 0 2 2 2 2 RsgA GTPase Septin PF00735.18 gi|336252823|ref|YP_004595930.1| - 0.00011 21.6 0.0 0.00019 20.8 0.0 1.3 1 1 0 1 1 1 1 Septin MMR_HSR1_Xtn PF16897.5 gi|336252823|ref|YP_004595930.1| - 0.00017 21.6 0.0 0.0003 20.8 0.0 1.5 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain NB-ARC PF00931.22 gi|336252823|ref|YP_004595930.1| - 0.00023 20.4 0.0 0.00038 19.7 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain SRPRB PF09439.10 gi|336252823|ref|YP_004595930.1| - 0.00035 20.1 0.0 0.072 12.5 0.0 2.2 2 0 0 2 2 2 1 Signal recognition particle receptor beta subunit AAA PF00004.29 gi|336252823|ref|YP_004595930.1| - 0.00087 19.7 0.1 0.021 15.2 0.0 2.3 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Ras PF00071.22 gi|336252823|ref|YP_004595930.1| - 0.001 18.7 0.0 0.43 10.2 0.0 2.5 2 1 0 2 2 2 1 Ras family AAA_18 PF13238.6 gi|336252823|ref|YP_004595930.1| - 0.0011 19.6 0.0 0.004 17.7 0.0 2.0 1 1 0 1 1 1 1 AAA domain Roc PF08477.13 gi|336252823|ref|YP_004595930.1| - 0.0013 18.9 0.0 0.012 15.8 0.0 2.1 2 0 0 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase AAA_24 PF13479.6 gi|336252823|ref|YP_004595930.1| - 0.0015 18.3 0.0 0.0028 17.4 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|336252823|ref|YP_004595930.1| - 0.0048 17.3 0.0 0.0088 16.4 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_28 PF13521.6 gi|336252823|ref|YP_004595930.1| - 0.0049 17.1 0.4 0.02 15.2 0.4 2.0 1 1 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|336252823|ref|YP_004595930.1| - 0.0053 16.7 0.0 0.011 15.6 0.0 1.8 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea Dynamin_N PF00350.23 gi|336252823|ref|YP_004595930.1| - 0.01 15.9 0.0 0.89 9.6 0.0 2.3 1 1 0 2 2 2 0 Dynamin family RNA_helicase PF00910.22 gi|336252823|ref|YP_004595930.1| - 0.011 16.1 0.0 0.017 15.5 0.0 1.4 1 0 0 1 1 1 0 RNA helicase ABC_tran PF00005.27 gi|336252823|ref|YP_004595930.1| - 0.012 16.2 0.0 0.017 15.6 0.0 1.4 1 0 0 1 1 1 0 ABC transporter cobW PF02492.19 gi|336252823|ref|YP_004595930.1| - 0.024 14.2 0.5 6.6 6.3 0.1 2.4 2 1 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_25 PF13481.6 gi|336252823|ref|YP_004595930.1| - 0.036 13.7 0.2 0.089 12.4 0.2 1.7 1 1 0 1 1 1 0 AAA domain RuvB_N PF05496.12 gi|336252823|ref|YP_004595930.1| - 0.038 13.7 0.0 0.074 12.8 0.0 1.5 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain NACHT PF05729.12 gi|336252823|ref|YP_004595930.1| - 0.064 13.2 0.0 0.11 12.5 0.0 1.3 1 0 0 1 1 1 0 NACHT domain TniB PF05621.11 gi|336252823|ref|YP_004595930.1| - 0.12 11.7 0.0 0.2 11.1 0.0 1.4 1 0 0 1 1 1 0 Bacterial TniB protein Parvo_NS1 PF01057.17 gi|336252823|ref|YP_004595930.1| - 0.13 11.4 0.0 0.21 10.6 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 AAA_22 PF13401.6 gi|336252823|ref|YP_004595930.1| - 0.14 12.5 0.0 0.28 11.4 0.0 1.7 1 1 0 1 1 1 0 AAA domain Gtr1_RagA PF04670.12 gi|336252823|ref|YP_004595930.1| - 0.16 11.3 0.0 1.2 8.4 0.0 2.1 1 1 0 1 1 1 0 Gtr1/RagA G protein conserved region Cdc6_C PF09079.11 gi|336252824|ref|YP_004595931.1| - 6.3e-24 83.8 0.1 1.5e-23 82.5 0.1 1.7 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_16 PF13191.6 gi|336252824|ref|YP_004595931.1| - 1.7e-09 38.3 0.3 1.4e-08 35.3 0.0 2.5 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|336252824|ref|YP_004595931.1| - 2.4e-09 37.7 0.1 0.0021 18.5 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|336252824|ref|YP_004595931.1| - 9.2e-09 35.7 0.1 3.2e-06 27.5 0.0 2.6 2 0 0 2 2 2 1 AAA domain RuvB_N PF05496.12 gi|336252824|ref|YP_004595931.1| - 0.00054 19.7 0.0 0.0017 18.1 0.0 1.9 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain TniB PF05621.11 gi|336252824|ref|YP_004595931.1| - 0.00065 19.2 0.2 0.0054 16.2 0.0 2.3 2 0 0 2 2 2 1 Bacterial TniB protein DUF815 PF05673.13 gi|336252824|ref|YP_004595931.1| - 0.0026 16.9 0.0 0.0064 15.7 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF815) Sigma54_activat PF00158.26 gi|336252824|ref|YP_004595931.1| - 0.0027 17.4 0.0 0.0065 16.2 0.0 1.6 1 0 0 1 1 1 1 Sigma-54 interaction domain ATPase_2 PF01637.18 gi|336252824|ref|YP_004595931.1| - 0.0065 16.4 0.2 0.15 11.9 0.0 2.4 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea T2SSE PF00437.20 gi|336252824|ref|YP_004595931.1| - 0.0069 15.5 0.0 0.012 14.7 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_2 PF07724.14 gi|336252824|ref|YP_004595931.1| - 0.0072 16.5 0.1 5.1 7.2 0.1 2.4 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_18 PF13238.6 gi|336252824|ref|YP_004595931.1| - 0.0082 16.7 0.1 0.027 15.0 0.0 1.9 2 0 0 2 2 2 1 AAA domain Rad17 PF03215.15 gi|336252824|ref|YP_004595931.1| - 0.012 15.5 0.0 0.11 12.4 0.0 2.2 2 0 0 2 2 2 0 Rad17 P-loop domain AAA_32 PF13654.6 gi|336252824|ref|YP_004595931.1| - 0.016 14.0 0.4 1.3 7.8 0.0 2.2 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|336252824|ref|YP_004595931.1| - 0.027 15.0 0.0 0.093 13.2 0.0 1.9 1 0 0 1 1 1 0 ABC transporter TIP49 PF06068.13 gi|336252824|ref|YP_004595931.1| - 0.036 13.3 0.0 0.075 12.2 0.0 1.5 1 0 0 1 1 1 0 TIP49 P-loop domain AAA_assoc_2 PF16193.5 gi|336252824|ref|YP_004595931.1| - 0.039 14.3 1.0 0.099 13.0 0.3 2.0 2 0 0 2 2 1 0 AAA C-terminal domain AAA_7 PF12775.7 gi|336252824|ref|YP_004595931.1| - 0.04 13.4 0.0 0.066 12.7 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region DNA_pol3_delta2 PF13177.6 gi|336252824|ref|YP_004595931.1| - 0.058 13.2 0.0 0.17 11.7 0.0 1.8 2 1 0 2 2 2 0 DNA polymerase III, delta subunit AAA_24 PF13479.6 gi|336252824|ref|YP_004595931.1| - 0.087 12.5 0.1 0.31 10.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain MutS_III PF05192.18 gi|336252824|ref|YP_004595931.1| - 0.093 12.9 2.9 0.13 12.5 0.5 2.2 2 2 0 2 2 2 0 MutS domain III DEAD PF00270.29 gi|336252824|ref|YP_004595931.1| - 0.094 12.5 0.7 8.3 6.1 0.0 2.7 3 0 0 3 3 3 0 DEAD/DEAH box helicase KAP_NTPase PF07693.14 gi|336252824|ref|YP_004595931.1| - 0.1 11.8 0.1 0.33 10.1 0.0 1.7 1 1 0 2 2 2 0 KAP family P-loop domain NB-ARC PF00931.22 gi|336252824|ref|YP_004595931.1| - 0.11 11.7 0.0 0.17 11.0 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain RNA_helicase PF00910.22 gi|336252824|ref|YP_004595931.1| - 0.11 12.9 0.0 0.24 11.8 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA_lid_10 PF17872.1 gi|336252824|ref|YP_004595931.1| - 0.15 12.2 0.0 1.2 9.3 0.0 2.2 2 0 0 2 2 2 0 AAA lid domain ABC_tran_CTD PF16326.5 gi|336252824|ref|YP_004595931.1| - 0.52 10.6 2.6 14 6.0 0.2 2.6 2 0 0 2 2 2 0 ABC transporter C-terminal domain TAT_signal PF10518.9 gi|336252825|ref|YP_004595932.1| - 0.012 15.4 1.6 0.017 15.0 1.6 1.2 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF4115 PF13464.6 gi|336252825|ref|YP_004595932.1| - 0.17 12.1 0.0 6.4 7.0 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4115) Peptidase_S24 PF00717.23 gi|336252826|ref|YP_004595933.1| - 1.2e-05 25.1 0.4 3.3e-05 23.8 0.4 1.8 1 1 0 1 1 1 1 Peptidase S24-like DNA_pol_E_B PF04042.16 gi|336252827|ref|YP_004595934.1| - 2.5e-12 46.6 0.0 3.8e-12 46.0 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase alpha/epsilon subunit B Metallophos_2 PF12850.7 gi|336252827|ref|YP_004595934.1| - 1e-10 42.0 3.0 2.7e-10 40.7 3.0 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|336252827|ref|YP_004595934.1| - 5.1e-10 40.2 0.6 9.3e-10 39.3 0.6 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase DUF1249 PF06853.12 gi|336252827|ref|YP_004595934.1| - 0.19 11.8 0.0 0.37 10.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1249) HTH_20 PF12840.7 gi|336252828|ref|YP_004595935.1| - 4.1e-09 36.3 0.2 6.7e-09 35.7 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|336252828|ref|YP_004595935.1| - 3.1e-07 30.2 0.0 4.2e-07 29.7 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|336252828|ref|YP_004595935.1| - 4.2e-07 29.7 0.1 7.1e-07 29.0 0.1 1.3 1 0 0 1 1 1 1 MarR family PadR PF03551.14 gi|336252828|ref|YP_004595935.1| - 5.8e-06 26.2 0.0 6.9e-05 22.7 0.0 2.1 2 0 0 2 2 2 1 Transcriptional regulator PadR-like family HTH_11 PF08279.12 gi|336252828|ref|YP_004595935.1| - 2.8e-05 24.0 0.0 4.6e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_Crp_2 PF13545.6 gi|336252828|ref|YP_004595935.1| - 9.6e-05 22.3 0.1 0.00015 21.7 0.1 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_5 PF01022.20 gi|336252828|ref|YP_004595935.1| - 0.00014 21.7 0.0 0.00021 21.1 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|336252828|ref|YP_004595935.1| - 0.0018 17.8 0.2 0.0071 15.9 0.2 1.9 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.20 gi|336252828|ref|YP_004595935.1| - 0.022 15.1 0.0 0.038 14.3 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator HxlR PF01638.17 gi|336252828|ref|YP_004595935.1| - 0.03 14.2 0.0 0.038 13.8 0.0 1.3 1 0 0 1 1 1 0 HxlR-like helix-turn-helix Replic_Relax PF13814.6 gi|336252828|ref|YP_004595935.1| - 0.048 13.7 0.0 0.06 13.4 0.0 1.2 1 0 0 1 1 1 0 Replication-relaxation HTH_36 PF13730.6 gi|336252828|ref|YP_004595935.1| - 0.05 13.6 0.0 0.079 12.9 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain MarR PF01047.22 gi|336252828|ref|YP_004595935.1| - 0.056 13.4 0.0 0.087 12.8 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_IclR PF09339.10 gi|336252828|ref|YP_004595935.1| - 0.062 13.1 0.0 0.099 12.5 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain GntR PF00392.21 gi|336252828|ref|YP_004595935.1| - 0.065 12.9 0.1 0.12 12.0 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family FUR PF01475.19 gi|336252828|ref|YP_004595935.1| - 0.066 13.4 0.0 0.089 12.9 0.0 1.4 1 0 0 1 1 1 0 Ferric uptake regulator family ArsR PF09824.9 gi|336252828|ref|YP_004595935.1| - 0.067 12.8 0.0 0.082 12.5 0.0 1.1 1 0 0 1 1 1 0 ArsR transcriptional regulator DUF1887 PF09002.11 gi|336252829|ref|YP_004595936.1| - 0.022 13.5 0.0 0.031 13.0 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1887) TetR_C_6 PF13977.6 gi|336252830|ref|YP_004595937.1| - 1.5e-13 50.9 6.4 3.1e-13 50.0 6.4 1.5 1 0 0 1 1 1 1 BetI-type transcriptional repressor, C-terminal TetR_N PF00440.23 gi|336252830|ref|YP_004595937.1| - 1.9e-08 33.9 0.0 3.5e-08 33.1 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_24 PF17932.1 gi|336252830|ref|YP_004595937.1| - 1.7e-06 28.2 0.8 4.9e-06 26.8 0.2 2.2 1 1 2 3 3 3 1 Tetracyclin repressor-like, C-terminal domain TetR_C_27 PF17935.1 gi|336252830|ref|YP_004595937.1| - 3.8e-05 23.7 0.6 0.00011 22.2 0.3 2.0 2 0 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_7 PF14246.6 gi|336252830|ref|YP_004595937.1| - 0.013 15.6 0.7 0.028 14.4 0.7 1.6 1 0 0 1 1 1 0 AefR-like transcriptional repressor, C-terminal domain RLL PF10036.9 gi|336252830|ref|YP_004595937.1| - 0.099 12.5 0.0 0.14 12.0 0.0 1.2 1 0 0 1 1 1 0 RNA transcription, translation and transport factor protein AA_kinase PF00696.28 gi|336252832|ref|YP_004595939.1| - 1.1e-46 159.4 2.7 1.1e-46 159.4 2.7 1.7 2 0 0 2 2 2 1 Amino acid kinase family ACT_7 PF13840.6 gi|336252832|ref|YP_004595939.1| - 1.9e-13 50.0 0.0 8.7e-07 28.6 0.0 2.5 2 0 0 2 2 2 2 ACT domain ACT PF01842.25 gi|336252832|ref|YP_004595939.1| - 2.9e-07 30.1 2.5 0.064 13.0 0.0 3.5 3 0 0 3 3 3 2 ACT domain ACT_4 PF13291.6 gi|336252832|ref|YP_004595939.1| - 0.00087 19.8 0.0 1.7 9.3 0.0 2.7 2 0 0 2 2 2 2 ACT domain Zn_Tnp_IS1595 PF12760.7 gi|336252833|ref|YP_004595940.1| - 9.2e-05 22.3 2.5 9.9e-05 22.2 2.5 1.1 1 0 0 1 1 1 1 Transposase zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|336252833|ref|YP_004595940.1| - 0.006 16.5 1.9 0.033 14.1 1.9 1.9 1 1 0 1 1 1 1 zinc-ribbon domain zf-C2HC_2 PF13913.6 gi|336252833|ref|YP_004595940.1| - 0.013 15.4 3.6 0.79 9.7 0.1 2.4 2 0 0 2 2 2 0 zinc-finger of a C2HC-type Zn-ribbon_8 PF09723.10 gi|336252833|ref|YP_004595940.1| - 0.05 13.7 3.7 2.4 8.4 0.3 2.1 2 0 0 2 2 2 0 Zinc ribbon domain Beta_elim_lyase PF01212.21 gi|336252834|ref|YP_004595941.1| - 3e-76 256.5 0.1 4.2e-76 256.0 0.1 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|336252834|ref|YP_004595941.1| - 2.3e-05 23.9 0.4 0.00014 21.3 0.4 2.0 1 1 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family SBP_bac_6 PF13343.6 gi|336252836|ref|YP_004595943.1| - 3e-22 79.2 0.0 4e-22 78.8 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|336252836|ref|YP_004595943.1| - 4e-10 40.0 0.0 5.5e-10 39.5 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|336252836|ref|YP_004595943.1| - 1.2e-07 31.7 0.3 1.9e-07 31.1 0.3 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|336252836|ref|YP_004595943.1| - 0.014 15.4 0.0 0.018 15.0 0.0 1.3 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein AI-2E_transport PF01594.16 gi|336252837|ref|YP_004595944.1| - 7.1e-30 104.3 37.0 1.7e-29 103.0 37.0 1.5 1 1 0 1 1 1 1 AI-2E family transporter DUF456 PF04306.13 gi|336252837|ref|YP_004595944.1| - 0.0015 18.8 15.4 0.0015 18.8 15.4 3.4 3 1 0 3 3 3 2 Protein of unknown function (DUF456) DUF5518 PF17647.1 gi|336252838|ref|YP_004595945.1| - 3.2e-18 66.0 36.8 3.8e-18 65.7 36.8 1.1 1 0 0 1 1 1 1 Family of unknown function (DUF5518) PT-VENN PF04829.13 gi|336252838|ref|YP_004595945.1| - 0.43 10.7 3.5 0.49 10.5 0.9 2.2 2 0 0 2 2 2 0 Pre-toxin domain with VENN motif Rick_17kDa_Anti PF05433.15 gi|336252838|ref|YP_004595945.1| - 4.1 7.3 20.4 32 4.5 0.6 3.8 3 1 0 3 3 3 0 Glycine zipper 2TM domain FecCD PF01032.18 gi|336252839|ref|YP_004595946.1| - 1.1e-90 303.9 36.0 2.3e-90 302.8 36.0 1.5 1 1 0 1 1 1 1 FecCD transport family ABC-3 PF00950.17 gi|336252839|ref|YP_004595946.1| - 0.0022 17.5 19.9 0.008 15.7 19.9 1.9 1 1 0 1 1 1 1 ABC 3 transport family ABC_tran PF00005.27 gi|336252840|ref|YP_004595947.1| - 2.2e-31 109.2 0.0 2.9e-31 108.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|336252840|ref|YP_004595947.1| - 1.4e-11 44.8 3.9 9.3e-06 25.7 0.4 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|336252840|ref|YP_004595947.1| - 1.1e-10 41.4 0.3 2.3e-08 33.7 0.3 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|336252840|ref|YP_004595947.1| - 1.5e-05 24.7 0.0 2.9e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|336252840|ref|YP_004595947.1| - 0.00015 21.6 0.0 0.0009 19.1 0.0 1.8 1 1 1 2 2 2 1 AAA ATPase domain ABC_ATPase PF09818.9 gi|336252840|ref|YP_004595947.1| - 0.00041 19.3 0.4 0.026 13.3 0.0 2.6 2 1 0 2 2 2 1 Predicted ATPase of the ABC class AAA_23 PF13476.6 gi|336252840|ref|YP_004595947.1| - 0.0005 20.6 0.0 0.00077 20.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|336252840|ref|YP_004595947.1| - 0.0012 18.5 0.6 0.0021 17.7 0.0 1.7 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|336252840|ref|YP_004595947.1| - 0.0023 18.2 1.6 0.017 15.4 1.6 2.1 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|336252840|ref|YP_004595947.1| - 0.0024 18.0 1.7 0.0058 16.8 0.1 2.4 2 1 0 2 2 2 1 AAA domain NACHT PF05729.12 gi|336252840|ref|YP_004595947.1| - 0.0061 16.5 0.5 0.017 15.1 0.1 1.8 2 0 0 2 2 2 1 NACHT domain RsgA_GTPase PF03193.16 gi|336252840|ref|YP_004595947.1| - 0.0069 16.3 0.4 0.016 15.1 0.4 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_16 PF13191.6 gi|336252840|ref|YP_004595947.1| - 0.0073 16.7 0.8 0.014 15.8 0.8 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|336252840|ref|YP_004595947.1| - 0.0079 15.9 0.4 0.014 15.1 0.4 1.6 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|336252840|ref|YP_004595947.1| - 0.013 16.0 0.0 0.029 14.8 0.0 1.7 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.6 gi|336252840|ref|YP_004595947.1| - 0.043 13.5 0.2 0.28 10.9 0.0 2.0 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.22 gi|336252840|ref|YP_004595947.1| - 0.047 13.3 0.0 0.11 12.1 0.0 1.6 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain TsaE PF02367.17 gi|336252840|ref|YP_004595947.1| - 0.052 13.6 0.0 0.1 12.6 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_14 PF13173.6 gi|336252840|ref|YP_004595947.1| - 0.067 13.2 0.0 0.22 11.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain TIP49 PF06068.13 gi|336252840|ref|YP_004595947.1| - 0.087 12.0 0.0 0.15 11.2 0.0 1.3 1 0 0 1 1 1 0 TIP49 P-loop domain RecA PF00154.21 gi|336252840|ref|YP_004595947.1| - 0.095 12.2 0.0 0.31 10.5 0.0 1.7 2 0 0 2 2 2 0 recA bacterial DNA recombination protein ATP_bind_1 PF03029.17 gi|336252840|ref|YP_004595947.1| - 0.12 12.1 0.5 2.8 7.6 0.0 2.1 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_18 PF13238.6 gi|336252840|ref|YP_004595947.1| - 0.13 12.9 0.0 0.36 11.4 0.0 1.8 1 0 0 1 1 1 0 AAA domain cobW PF02492.19 gi|336252840|ref|YP_004595947.1| - 0.13 11.8 0.2 0.32 10.6 0.0 1.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Cytidylate_kin PF02224.18 gi|336252840|ref|YP_004595947.1| - 0.15 11.8 0.1 0.3 10.8 0.1 1.5 1 0 0 1 1 1 0 Cytidylate kinase NTPase_1 PF03266.15 gi|336252840|ref|YP_004595947.1| - 0.17 11.8 0.3 2.2 8.2 0.0 2.1 2 0 0 2 2 2 0 NTPase RNA_helicase PF00910.22 gi|336252840|ref|YP_004595947.1| - 0.17 12.3 0.0 0.32 11.4 0.0 1.5 1 0 0 1 1 1 0 RNA helicase NB-ARC PF00931.22 gi|336252840|ref|YP_004595947.1| - 0.17 11.0 0.1 0.36 10.0 0.1 1.4 1 0 0 1 1 1 0 NB-ARC domain MMR_HSR1 PF01926.23 gi|336252840|ref|YP_004595947.1| - 0.29 11.2 0.5 2 8.5 0.1 2.1 2 0 0 2 2 2 0 50S ribosome-binding GTPase Peripla_BP_2 PF01497.18 gi|336252841|ref|YP_004595948.1| - 1.8e-14 53.9 0.1 2.7e-14 53.3 0.1 1.2 1 0 0 1 1 1 1 Periplasmic binding protein MacB_PCD PF12704.7 gi|336252842|ref|YP_004595949.1| - 5.1e-19 69.4 5.4 5.1e-19 69.4 5.4 2.2 2 2 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|336252842|ref|YP_004595949.1| - 4.6e-15 55.9 0.8 4.6e-15 55.9 0.8 3.0 3 0 0 3 3 3 1 FtsX-like permease family ABC_tran PF00005.27 gi|336252843|ref|YP_004595950.1| - 3.4e-33 115.1 0.0 4.9e-33 114.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|336252843|ref|YP_004595950.1| - 1.7e-07 30.9 0.1 0.0015 18.0 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|336252843|ref|YP_004595950.1| - 5.7e-05 22.8 0.1 5.7e-05 22.8 0.1 1.7 2 0 0 2 2 1 1 P-loop containing region of AAA domain AAA_21 PF13304.6 gi|336252843|ref|YP_004595950.1| - 5.8e-05 23.0 0.3 0.2 11.4 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|336252843|ref|YP_004595950.1| - 0.0011 19.3 0.3 0.0026 18.2 0.2 1.6 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|336252843|ref|YP_004595950.1| - 0.0021 18.0 0.1 0.0052 16.7 0.0 1.6 2 0 0 2 2 2 1 RsgA GTPase AAA_22 PF13401.6 gi|336252843|ref|YP_004595950.1| - 0.0061 16.8 0.4 0.08 13.2 0.1 2.2 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.6 gi|336252843|ref|YP_004595950.1| - 0.026 15.0 0.0 0.04 14.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|336252843|ref|YP_004595950.1| - 0.04 14.0 0.1 0.43 10.7 0.0 2.3 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_25 PF13481.6 gi|336252843|ref|YP_004595950.1| - 0.045 13.3 1.9 0.24 10.9 1.9 2.2 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|336252843|ref|YP_004595950.1| - 0.062 13.0 0.5 0.16 11.6 0.5 1.9 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|336252843|ref|YP_004595950.1| - 0.067 13.3 1.0 0.28 11.3 1.0 2.0 1 1 0 1 1 1 0 AAA domain DUF3987 PF13148.6 gi|336252843|ref|YP_004595950.1| - 0.096 11.7 0.0 0.16 10.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) AAA_24 PF13479.6 gi|336252843|ref|YP_004595950.1| - 0.17 11.6 0.0 0.32 10.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain Peptidase_S24 PF00717.23 gi|336252844|ref|YP_004595951.1| - 9.4e-07 28.7 2.4 1.2e-06 28.4 1.1 1.7 2 1 0 2 2 2 1 Peptidase S24-like TAT_signal PF10518.9 gi|336252845|ref|YP_004595952.1| - 0.031 14.1 7.2 0.052 13.4 7.2 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Rib_5-P_isom_A PF06026.14 gi|336252846|ref|YP_004595953.1| - 2.7e-63 212.7 0.0 3.2e-63 212.4 0.0 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.22 gi|336252846|ref|YP_004595953.1| - 9.3e-07 28.9 0.3 3.9e-05 23.6 0.1 2.2 2 0 0 2 2 2 1 DeoR C terminal sensor domain CoA_trans PF01144.23 gi|336252846|ref|YP_004595953.1| - 0.037 13.4 0.1 0.13 11.6 0.0 1.9 3 0 0 3 3 3 0 Coenzyme A transferase DUF5518 PF17647.1 gi|336252847|ref|YP_004595954.1| - 0.0027 17.8 21.6 0.0027 17.8 21.6 3.0 2 1 1 3 3 3 1 Family of unknown function (DUF5518) DUF1931 PF09123.11 gi|336252850|ref|YP_004595957.1| - 2.3e-05 24.5 1.5 2.6e-05 24.4 1.5 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1931) CBFD_NFYB_HMF PF00808.23 gi|336252850|ref|YP_004595957.1| - 0.0012 19.1 0.1 0.0018 18.5 0.1 1.5 1 1 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.24 gi|336252850|ref|YP_004595957.1| - 0.064 13.6 0.0 0.064 13.6 0.0 1.2 1 0 0 1 1 1 0 Core histone H2A/H2B/H3/H4 Glutaredoxin PF00462.24 gi|336252850|ref|YP_004595957.1| - 0.19 12.0 0.4 0.23 11.7 0.4 1.1 1 0 0 1 1 1 0 Glutaredoxin AIRC PF00731.20 gi|336252851|ref|YP_004595958.1| - 6.8e-13 48.5 2.8 6.8e-13 48.5 2.8 1.6 2 0 0 2 2 2 1 AIR carboxylase TraB PF01963.17 gi|336252851|ref|YP_004595958.1| - 0.033 14.1 0.0 0.051 13.5 0.0 1.2 1 0 0 1 1 1 0 TraB family DUF1463 PF07316.11 gi|336252851|ref|YP_004595958.1| - 0.035 14.0 0.0 0.052 13.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1463) DUF2267 PF10025.9 gi|336252851|ref|YP_004595958.1| - 0.04 14.2 0.9 0.071 13.4 0.9 1.5 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2267) DZR PF12773.7 gi|336252852|ref|YP_004595959.1| - 0.016 15.3 0.5 0.02 14.9 0.5 1.2 1 0 0 1 1 1 0 Double zinc ribbon Lar_restr_allev PF14354.6 gi|336252852|ref|YP_004595959.1| - 0.031 14.6 1.2 0.035 14.5 1.2 1.1 1 0 0 1 1 1 0 Restriction alleviation protein Lar DUF3268 PF11672.8 gi|336252852|ref|YP_004595959.1| - 0.036 14.4 0.3 0.036 14.4 0.3 1.0 1 0 0 1 1 1 0 zinc-finger-containing domain Zn-ribbon_8 PF09723.10 gi|336252852|ref|YP_004595959.1| - 0.2 11.8 2.8 0.44 10.7 2.8 1.6 1 1 0 1 1 1 0 Zinc ribbon domain GIY-YIG PF01541.24 gi|336252853|ref|YP_004595960.1| - 1.9e-16 60.1 0.1 2.1e-16 59.9 0.1 1.0 1 0 0 1 1 1 1 GIY-YIG catalytic domain FMN_red PF03358.15 gi|336252854|ref|YP_004595961.1| - 1.3e-31 109.4 0.0 1.6e-31 109.1 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|336252854|ref|YP_004595961.1| - 5.6e-11 42.5 0.0 7.4e-11 42.1 0.0 1.3 1 1 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.7 gi|336252854|ref|YP_004595961.1| - 0.083 13.1 0.0 0.15 12.3 0.0 1.3 1 0 0 1 1 1 0 Flavodoxin domain PGM_PMM_I PF02878.16 gi|336252855|ref|YP_004595962.1| - 2.4e-38 130.9 0.0 4.8e-38 130.0 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_III PF02880.16 gi|336252855|ref|YP_004595962.1| - 1.8e-23 82.9 0.0 3.1e-23 82.1 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_II PF02879.16 gi|336252855|ref|YP_004595962.1| - 5e-23 81.7 0.2 5e-23 81.7 0.2 2.1 2 1 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.20 gi|336252855|ref|YP_004595962.1| - 7.8e-16 58.0 0.1 2.3e-15 56.5 0.1 1.9 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain EndoU_bacteria PF14436.6 gi|336252856|ref|YP_004595963.1| - 0.013 15.9 0.1 0.029 14.7 0.1 1.6 1 0 0 1 1 1 0 Bacterial EndoU nuclease GAT PF03127.14 gi|336252856|ref|YP_004595963.1| - 0.15 12.4 2.1 0.37 11.1 2.1 1.7 1 0 0 1 1 1 0 GAT domain RXLR PF16810.5 gi|336252856|ref|YP_004595963.1| - 0.45 10.9 3.0 0.72 10.3 0.2 2.4 2 0 0 2 2 2 0 RXLR phytopathogen effector protein, Avirulence activity Terminase_GpA PF05876.12 gi|336252861|ref|YP_004595968.1| - 0.078 11.5 0.2 0.087 11.4 0.2 1.1 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) DNA_ligase_ZBD PF03119.16 gi|336252861|ref|YP_004595968.1| - 0.73 9.9 3.2 1.8 8.7 3.2 1.9 1 1 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain Hexapep PF00132.24 gi|336252862|ref|YP_004595969.1| - 7.1e-14 50.9 8.4 9.9e-09 34.6 0.4 3.3 3 1 1 4 4 4 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|336252862|ref|YP_004595969.1| - 2.4e-07 30.4 8.1 9.2e-07 28.5 1.8 3.1 2 1 0 2 2 2 1 Hexapeptide repeat of succinyl-transferase SATase_N PF06426.14 gi|336252862|ref|YP_004595969.1| - 0.00011 22.6 0.0 0.00018 21.8 0.0 1.4 1 0 0 1 1 1 1 Serine acetyltransferase, N-terminal Bactofilin PF04519.13 gi|336252862|ref|YP_004595969.1| - 0.036 14.4 2.6 0.069 13.5 2.6 1.4 1 1 0 1 1 1 0 Polymer-forming cytoskeletal Metallophos_2 PF12850.7 gi|336252863|ref|YP_004595970.1| - 1.6e-32 113.0 0.0 1.9e-32 112.7 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|336252863|ref|YP_004595970.1| - 6.6e-13 49.6 0.4 9.3e-12 45.9 0.4 2.0 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 gi|336252863|ref|YP_004595970.1| - 0.062 12.6 0.3 0.24 10.7 0.1 1.9 2 1 0 2 2 2 0 Metallophosphoesterase, calcineurin superfamily DUF4418 PF14387.6 gi|336252864|ref|YP_004595971.1| - 0.11 12.8 2.9 0.19 12.0 2.9 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4418) IMP_cyclohyd PF07826.11 gi|336252865|ref|YP_004595972.1| - 7.9e-65 218.1 0.0 9.1e-65 217.8 0.0 1.0 1 0 0 1 1 1 1 IMP cyclohydrolase-like protein HNH PF01844.23 gi|336252866|ref|YP_004595973.1| - 0.038 14.2 23.0 3.2 8.0 8.6 3.9 2 2 0 2 2 2 0 HNH endonuclease NinF PF05810.12 gi|336252866|ref|YP_004595973.1| - 1.2 9.0 6.1 5.4 7.0 0.3 3.0 3 0 0 3 3 3 0 NinF protein Rhodanese PF00581.20 gi|336252867|ref|YP_004595974.1| - 1.7e-06 28.5 0.1 4.8e-06 27.1 0.1 1.7 1 1 0 1 1 1 1 Rhodanese-like domain TAT_signal PF10518.9 gi|336252867|ref|YP_004595974.1| - 0.005 16.6 2.1 0.0084 15.9 2.1 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Oxidored_FMN PF00724.20 gi|336252868|ref|YP_004595975.1| - 4e-39 134.9 0.0 4.2e-34 118.3 0.0 2.1 1 1 0 2 2 2 2 NADH:flavin oxidoreductase / NADH oxidase family Dus PF01207.17 gi|336252868|ref|YP_004595975.1| - 0.0024 17.0 0.0 0.0055 15.8 0.0 1.5 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) His_biosynth PF00977.21 gi|336252868|ref|YP_004595975.1| - 0.02 14.3 0.0 0.044 13.3 0.0 1.5 1 0 0 1 1 1 0 Histidine biosynthesis protein NMO PF03060.15 gi|336252868|ref|YP_004595975.1| - 0.062 12.7 0.0 0.11 11.9 0.0 1.3 1 0 0 1 1 1 0 Nitronate monooxygenase zf_UBZ PF18439.1 gi|336252869|ref|YP_004595976.1| - 0.43 10.2 3.1 1.9 8.1 0.2 2.3 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger ADH_N PF08240.12 gi|336252870|ref|YP_004595977.1| - 3.3e-28 97.7 1.1 5.2e-28 97.1 0.3 1.7 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|336252870|ref|YP_004595977.1| - 1.3e-20 73.7 0.4 2.1e-20 73.0 0.4 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|336252870|ref|YP_004595977.1| - 1.7e-08 35.6 1.0 2.9e-08 34.8 1.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase TP_methylase PF00590.20 gi|336252870|ref|YP_004595977.1| - 0.01 15.8 0.9 0.09 12.7 0.5 2.2 2 0 0 2 2 2 0 Tetrapyrrole (Corrin/Porphyrin) Methylases Methyltransf_31 PF13847.6 gi|336252870|ref|YP_004595977.1| - 0.046 13.5 0.1 0.069 12.9 0.1 1.3 1 0 0 1 1 1 0 Methyltransferase domain Amidohydro_2 PF04909.14 gi|336252871|ref|YP_004595978.1| - 4.5e-41 141.5 4.7 5.6e-41 141.2 4.7 1.1 1 0 0 1 1 1 1 Amidohydrolase FeS_assembly_P PF01883.19 gi|336252872|ref|YP_004595979.1| - 6.5e-17 61.5 0.1 2.2e-16 59.8 0.1 1.9 1 0 0 1 1 1 1 Iron-sulfur cluster assembly protein LEA_2 PF03168.13 gi|336252873|ref|YP_004595980.1| - 1e-13 51.7 0.0 2.7e-08 34.3 0.0 2.6 2 1 0 2 2 2 2 Late embryogenesis abundant protein DUF3426 PF11906.8 gi|336252873|ref|YP_004595980.1| - 0.16 12.1 0.0 0.28 11.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3426) CGI-121 PF08617.10 gi|336252874|ref|YP_004595981.1| - 4.3e-09 36.7 0.0 5e-09 36.5 0.0 1.0 1 0 0 1 1 1 1 Kinase binding protein CGI-121 PGDYG PF14083.6 gi|336252874|ref|YP_004595981.1| - 0.069 13.4 0.1 0.12 12.7 0.1 1.4 1 0 0 1 1 1 0 PGDYG protein Stk19 PF10494.9 gi|336252874|ref|YP_004595981.1| - 0.16 11.7 0.0 0.23 11.1 0.0 1.2 1 0 0 1 1 1 0 Serine-threonine protein kinase 19 DEAD PF00270.29 gi|336252875|ref|YP_004595982.1| - 7.5e-23 81.2 0.0 1.4e-22 80.3 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase HHH_5 PF14520.6 gi|336252875|ref|YP_004595982.1| - 4.9e-09 36.7 1.8 1e-08 35.6 0.2 2.4 2 0 0 2 2 2 1 Helix-hairpin-helix domain ResIII PF04851.15 gi|336252875|ref|YP_004595982.1| - 6.8e-08 32.7 0.0 1.4e-07 31.7 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|336252875|ref|YP_004595982.1| - 1.7e-07 31.6 0.0 1.7e-06 28.3 0.0 2.5 2 1 0 2 2 2 1 Helicase conserved C-terminal domain DNA_pol_lambd_f PF10391.9 gi|336252875|ref|YP_004595982.1| - 0.00033 20.4 0.0 0.001 18.9 0.0 1.8 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda HHH PF00633.23 gi|336252875|ref|YP_004595982.1| - 0.038 13.9 0.0 1.9 8.5 0.0 3.3 2 0 0 2 2 2 0 Helix-hairpin-helix motif FCD PF07729.12 gi|336252875|ref|YP_004595982.1| - 0.8 10.1 5.1 0.47 10.9 0.8 2.6 2 0 0 2 2 2 0 FCD domain MgtE PF01769.16 gi|336252876|ref|YP_004595983.1| - 4e-26 91.8 11.3 6.6e-26 91.1 11.3 1.3 1 0 0 1 1 1 1 Divalent cation transporter MgtE_N PF03448.17 gi|336252876|ref|YP_004595983.1| - 3.9e-14 53.1 2.2 3.9e-14 53.1 2.2 2.3 3 0 0 3 3 3 1 MgtE intracellular N domain CBS PF00571.28 gi|336252876|ref|YP_004595983.1| - 1.7e-07 31.6 5.4 0.00059 20.2 0.6 3.0 3 0 0 3 3 3 2 CBS domain FliG_M PF14841.6 gi|336252876|ref|YP_004595983.1| - 0.12 12.6 0.0 0.4 10.9 0.0 1.9 1 0 0 1 1 1 0 FliG middle domain FliG_C PF01706.16 gi|336252876|ref|YP_004595983.1| - 0.13 12.5 0.0 0.81 9.9 0.0 2.2 2 0 0 2 2 2 0 FliG C-terminal domain PHO4 PF01384.20 gi|336252877|ref|YP_004595984.1| - 1.2e-12 47.6 10.3 1.2e-12 47.6 10.3 1.3 1 1 0 1 1 1 1 Phosphate transporter family Alk_phosphatase PF00245.20 gi|336252878|ref|YP_004595985.1| - 5e-76 256.3 5.0 6.9e-76 255.8 5.0 1.2 1 0 0 1 1 1 1 Alkaline phosphatase Metalloenzyme PF01676.18 gi|336252878|ref|YP_004595985.1| - 0.00094 18.6 1.1 0.0012 18.3 0.1 1.6 2 0 0 2 2 2 1 Metalloenzyme superfamily Phosphodiest PF01663.22 gi|336252878|ref|YP_004595985.1| - 0.054 13.1 0.2 0.14 11.7 0.2 1.8 1 1 0 1 1 1 0 Type I phosphodiesterase / nucleotide pyrophosphatase EF-hand_6 PF13405.6 gi|336252878|ref|YP_004595985.1| - 0.14 12.2 0.2 0.42 10.7 0.2 1.8 1 0 0 1 1 1 0 EF-hand domain Fer4_15 PF13459.6 gi|336252879|ref|YP_004595986.1| - 1.7e-20 73.5 4.7 2e-20 73.3 4.7 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|336252879|ref|YP_004595986.1| - 6.6e-06 26.6 1.0 1.2e-05 25.7 1.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4 PF00037.27 gi|336252879|ref|YP_004595986.1| - 0.041 13.7 1.6 3.2 7.7 0.1 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_19 PF06902.11 gi|336252879|ref|YP_004595986.1| - 0.067 13.3 0.2 0.44 10.7 0.2 2.0 1 1 0 1 1 1 0 Divergent 4Fe-4S mono-cluster Fer4_6 PF12837.7 gi|336252879|ref|YP_004595986.1| - 0.23 11.6 1.6 2.7 8.2 0.2 2.3 2 0 0 2 2 2 0 4Fe-4S binding domain Ldh_1_N PF00056.23 gi|336252880|ref|YP_004595987.1| - 6.6e-40 136.5 0.4 9.9e-40 135.9 0.4 1.3 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.18 gi|336252880|ref|YP_004595987.1| - 1.3e-29 103.3 0.0 2e-29 102.7 0.0 1.3 1 0 0 1 1 1 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain LDcluster4 PF18306.1 gi|336252881|ref|YP_004595988.1| - 4e-37 127.2 4.8 4.5e-37 127.1 4.8 1.0 1 0 0 1 1 1 1 SLOG cluster4 family Lysine_decarbox PF03641.14 gi|336252881|ref|YP_004595988.1| - 3.8e-07 30.3 0.1 6.7e-07 29.5 0.1 1.4 1 0 0 1 1 1 1 Possible lysine decarboxylase DNA_processg_A PF02481.15 gi|336252881|ref|YP_004595988.1| - 0.00043 19.6 3.6 0.0006 19.1 3.6 1.2 1 0 0 1 1 1 1 DNA recombination-mediator protein A Acetyltransf_10 PF13673.7 gi|336252882|ref|YP_004595989.1| - 4.6e-14 52.5 0.0 6.5e-14 52.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|336252882|ref|YP_004595989.1| - 1.6e-12 47.6 0.0 2.3e-12 47.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|336252882|ref|YP_004595989.1| - 8.2e-12 45.4 0.0 1e-11 45.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_9 PF13527.7 gi|336252882|ref|YP_004595989.1| - 9.1e-07 29.0 0.0 1.3e-06 28.5 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|336252882|ref|YP_004595989.1| - 0.00029 20.7 0.0 0.00065 19.6 0.0 1.6 1 1 0 1 1 1 1 FR47-like protein GNAT_acetyltr_2 PF13718.6 gi|336252882|ref|YP_004595989.1| - 0.024 14.1 0.0 0.032 13.6 0.0 1.1 1 0 0 1 1 1 0 GNAT acetyltransferase 2 NodA PF02474.15 gi|336252882|ref|YP_004595989.1| - 0.051 13.3 0.0 0.067 12.9 0.0 1.1 1 0 0 1 1 1 0 Nodulation protein A (NodA) Acetyltransf_3 PF13302.7 gi|336252882|ref|YP_004595989.1| - 0.12 13.1 0.0 0.12 13.0 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|336252882|ref|YP_004595989.1| - 0.14 12.3 0.1 0.2 11.8 0.1 1.2 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Auto_anti-p27 PF06677.12 gi|336252883|ref|YP_004595990.1| - 1.3e-13 50.9 1.3 1.8e-13 50.4 1.3 1.2 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DZR PF12773.7 gi|336252883|ref|YP_004595990.1| - 0.011 15.8 1.0 0.026 14.5 1.0 1.6 1 0 0 1 1 1 0 Double zinc ribbon Prok-RING_1 PF14446.6 gi|336252883|ref|YP_004595990.1| - 0.063 13.2 0.8 0.11 12.4 0.8 1.4 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zf-RRN7 PF11781.8 gi|336252883|ref|YP_004595990.1| - 0.56 9.9 4.1 2.2 8.0 4.1 1.9 1 1 0 1 1 1 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zinc_ribbon_2 PF13240.6 gi|336252883|ref|YP_004595990.1| - 1.6 8.5 5.8 5.1 7.0 5.7 1.9 1 1 0 1 1 1 0 zinc-ribbon domain SPX PF03105.19 gi|336252883|ref|YP_004595990.1| - 2.4 8.0 11.4 2.9 7.7 11.4 1.3 1 0 0 1 1 1 0 SPX domain SOG2 PF10428.9 gi|336252883|ref|YP_004595990.1| - 2.9 7.0 11.4 3.6 6.7 11.4 1.2 1 0 0 1 1 1 0 RAM signalling pathway protein Cu-oxidase_2 PF07731.14 gi|336252884|ref|YP_004595991.1| - 4.8e-30 104.1 12.6 1.1e-19 70.6 1.6 3.2 2 1 0 2 2 2 2 Multicopper oxidase Cu-oxidase_3 PF07732.15 gi|336252884|ref|YP_004595991.1| - 1.1e-22 80.3 7.7 8.6e-19 67.7 1.8 2.6 2 1 0 2 2 2 2 Multicopper oxidase Cu-oxidase PF00394.22 gi|336252884|ref|YP_004595991.1| - 1.1e-13 51.6 0.1 2.8e-13 50.3 0.0 1.7 2 0 0 2 2 2 1 Multicopper oxidase Cupredoxin_1 PF13473.6 gi|336252884|ref|YP_004595991.1| - 0.00035 20.6 0.0 0.23 11.6 0.0 2.8 2 1 0 2 2 2 2 Cupredoxin-like domain TAT_signal PF10518.9 gi|336252884|ref|YP_004595991.1| - 0.029 14.2 3.9 0.049 13.5 3.9 1.3 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Helicase_C PF00271.31 gi|336252885|ref|YP_004595992.1| - 3.8e-23 82.0 0.0 9e-22 77.5 0.0 2.6 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ERCC4 PF02732.15 gi|336252885|ref|YP_004595992.1| - 4.6e-23 82.2 0.0 1.1e-22 80.9 0.0 1.7 1 0 0 1 1 1 1 ERCC4 domain DEAD PF00270.29 gi|336252885|ref|YP_004595992.1| - 2.2e-15 56.9 0.0 6.5e-15 55.3 0.0 1.7 1 0 0 1 1 1 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|336252885|ref|YP_004595992.1| - 1.1e-12 48.4 0.0 3e-12 46.9 0.0 1.8 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HHH_5 PF14520.6 gi|336252885|ref|YP_004595992.1| - 1.1e-08 35.6 0.9 1.8e-07 31.6 0.2 3.0 3 0 0 3 3 2 1 Helix-hairpin-helix domain HHH_2 PF12826.7 gi|336252885|ref|YP_004595992.1| - 1.4e-08 34.7 0.6 7.4e-08 32.4 0.2 2.4 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH PF00633.23 gi|336252885|ref|YP_004595992.1| - 1e-05 25.1 0.5 0.0016 18.2 0.1 3.0 2 0 0 2 2 2 1 Helix-hairpin-helix motif Helicase_C_2 PF13307.6 gi|336252885|ref|YP_004595992.1| - 0.011 15.9 0.3 0.088 13.0 0.0 2.6 1 1 1 2 2 2 0 Helicase C-terminal domain 5_3_exonuc PF01367.20 gi|336252885|ref|YP_004595992.1| - 0.039 14.5 0.0 0.19 12.4 0.0 2.3 1 0 0 1 1 1 0 5'-3' exonuclease, C-terminal SAM fold MEDS PF14417.6 gi|336252885|ref|YP_004595992.1| - 0.062 13.1 0.4 19 5.1 0.0 3.0 2 0 0 2 2 2 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain MtrB PF05440.12 gi|336252885|ref|YP_004595992.1| - 0.089 13.2 0.1 0.32 11.4 0.1 1.9 1 0 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase subunit B OAM_dimer PF16554.5 gi|336252885|ref|YP_004595992.1| - 0.12 12.9 0.0 0.32 11.5 0.0 1.7 1 0 0 1 1 1 0 Dimerisation domain of d-ornithine 4,5-aminomutase DUF4407 PF14362.6 gi|336252885|ref|YP_004595992.1| - 0.29 10.4 9.5 0.8 9.0 2.2 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4407) DUF4618 PF15397.6 gi|336252885|ref|YP_004595992.1| - 0.36 10.2 6.5 0.25 10.7 3.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4618) RsbRD_N PF14361.6 gi|336252885|ref|YP_004595992.1| - 1.4 9.6 6.9 0.26 12.0 0.2 3.2 3 0 0 3 3 3 0 RsbT co-antagonist protein rsbRD N-terminal domain TolA_bind_tri PF16331.5 gi|336252885|ref|YP_004595992.1| - 7.2 6.8 9.4 4.4 7.5 1.3 2.6 2 0 0 2 2 2 0 TolA binding protein trimerisation Metallophos PF00149.28 gi|336252887|ref|YP_004595994.1| - 1.1e-09 39.1 0.0 1.4e-09 38.7 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|336252887|ref|YP_004595994.1| - 9e-07 29.2 0.0 1.4e-06 28.6 0.0 1.3 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.6 gi|336252887|ref|YP_004595994.1| - 0.14 11.5 0.0 0.19 11.0 0.0 1.2 1 0 0 1 1 1 0 Metallophosphoesterase, calcineurin superfamily PP_kinase_C_1 PF17941.1 gi|336252888|ref|YP_004595995.1| - 3.8e-73 244.5 0.7 1.5e-72 242.5 0.4 2.1 3 0 0 3 3 3 1 Polyphosphate kinase C-terminal domain 1 PP_kinase_C PF13090.6 gi|336252888|ref|YP_004595995.1| - 5.1e-66 221.4 0.0 3.8e-64 215.3 0.0 2.3 2 0 0 2 2 2 1 Polyphosphate kinase C-terminal domain 2 PP_kinase PF02503.17 gi|336252888|ref|YP_004595995.1| - 1.9e-65 220.3 3.1 3.9e-65 219.2 3.1 1.6 1 0 0 1 1 1 1 Polyphosphate kinase middle domain PP_kinase_N PF13089.6 gi|336252888|ref|YP_004595995.1| - 2.6e-36 124.2 0.0 8.3e-36 122.6 0.0 1.9 1 0 0 1 1 1 1 Polyphosphate kinase N-terminal domain PLDc_2 PF13091.6 gi|336252888|ref|YP_004595995.1| - 1.7e-15 57.1 0.0 4.3e-07 29.9 0.1 2.5 2 0 0 2 2 2 2 PLD-like domain MR_MLE_C PF13378.6 gi|336252888|ref|YP_004595995.1| - 0.04 13.5 3.2 0.042 13.4 0.4 2.2 2 0 0 2 2 2 0 Enolase C-terminal domain-like PP2C_C PF07830.13 gi|336252889|ref|YP_004595996.1| - 0.42 11.1 2.3 12 6.4 0.2 2.1 2 0 0 2 2 2 0 Protein serine/threonine phosphatase 2C, C-terminal domain Glyco_trans_2_3 PF13632.6 gi|336252890|ref|YP_004595997.1| - 8.1e-11 42.2 3.8 8.1e-11 42.2 3.8 2.4 2 1 0 2 2 2 1 Glycosyl transferase family group 2 Glyco_tranf_2_3 PF13641.6 gi|336252890|ref|YP_004595997.1| - 0.091 12.6 7.4 0.74 9.6 7.4 2.0 1 1 0 1 1 1 0 Glycosyltransferase like family 2 HGTP_anticodon PF03129.20 gi|336252892|ref|YP_004595999.1| - 1.2e-23 83.1 0.1 2.6e-23 82.0 0.1 1.6 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|336252892|ref|YP_004595999.1| - 1.7e-09 37.9 0.0 1.1e-08 35.3 0.0 2.1 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) zf-ribbon_3 PF13248.6 gi|336252892|ref|YP_004595999.1| - 0.002 17.5 0.3 2 7.9 0.0 2.4 2 0 0 2 2 2 2 zinc-ribbon domain Ribosomal_L32p PF01783.23 gi|336252892|ref|YP_004595999.1| - 0.019 15.2 0.1 0.48 10.7 0.0 2.8 3 0 0 3 3 3 0 Ribosomal L32p protein family Zn-ribbon_8 PF09723.10 gi|336252892|ref|YP_004595999.1| - 0.052 13.7 0.4 9.8 6.4 0.0 2.5 2 0 0 2 2 2 0 Zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|336252892|ref|YP_004595999.1| - 0.055 13.0 2.2 1 8.9 2.2 2.6 1 1 0 1 1 1 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.6 gi|336252892|ref|YP_004595999.1| - 0.11 12.3 1.5 12 5.8 0.1 2.5 2 0 0 2 2 2 0 zinc-ribbon domain zf-NADH-PPase PF09297.11 gi|336252892|ref|YP_004595999.1| - 0.17 11.6 1.7 1.1 8.9 0.0 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Prok-RING_1 PF14446.6 gi|336252892|ref|YP_004595999.1| - 0.48 10.4 1.6 6.7 6.7 0.1 2.4 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 zf-ACC PF17848.1 gi|336252892|ref|YP_004595999.1| - 1.2 9.3 2.5 17 5.6 0.0 2.4 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain CBS PF00571.28 gi|336252893|ref|YP_004596000.1| - 1.7e-33 114.8 6.7 6.9e-11 42.4 0.1 4.1 4 0 0 4 4 4 4 CBS domain DUF2288 PF10052.9 gi|336252893|ref|YP_004596000.1| - 0.79 9.8 2.8 0.91 9.7 0.3 2.3 3 0 0 3 3 3 0 Protein of unknown function (DUF2288) DoxX PF07681.12 gi|336252895|ref|YP_004596002.1| - 2.4e-14 53.7 14.4 1e-13 51.6 10.1 2.2 2 0 0 2 2 2 2 DoxX HR_lesion PF05514.11 gi|336252895|ref|YP_004596002.1| - 8.3e-05 22.8 0.2 0.00089 19.5 0.1 2.0 1 1 1 2 2 2 1 HR-like lesion-inducing YtpI PF14007.6 gi|336252895|ref|YP_004596002.1| - 1.1 9.5 4.6 45 4.3 2.6 2.5 1 1 1 2 2 2 0 YtpI-like protein BsuPI PF12690.7 gi|336252896|ref|YP_004596003.1| - 0.069 13.2 0.0 4.3 7.4 0.0 2.2 2 0 0 2 2 2 0 Intracellular proteinase inhibitor ABC_tran PF00005.27 gi|336252898|ref|YP_004596005.1| - 2.6e-32 112.2 0.0 4e-32 111.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|336252898|ref|YP_004596005.1| - 4.1e-18 65.7 0.1 9.2e-18 64.5 0.1 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region SMC_N PF02463.19 gi|336252898|ref|YP_004596005.1| - 2e-06 27.4 0.0 2.8e-06 26.9 0.0 1.1 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|336252898|ref|YP_004596005.1| - 0.00047 20.6 0.0 0.00086 19.7 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|336252898|ref|YP_004596005.1| - 0.0036 17.6 0.3 0.031 14.5 0.3 2.2 1 1 0 1 1 1 1 AAA domain AAA_21 PF13304.6 gi|336252898|ref|YP_004596005.1| - 0.0088 15.9 0.1 1.8 8.3 0.0 2.5 2 1 1 3 3 3 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|336252898|ref|YP_004596005.1| - 0.012 15.4 0.0 0.024 14.4 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA PF00004.29 gi|336252898|ref|YP_004596005.1| - 0.022 15.2 0.0 0.098 13.1 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) RsgA_GTPase PF03193.16 gi|336252898|ref|YP_004596005.1| - 0.025 14.5 0.0 0.046 13.6 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase PRK PF00485.18 gi|336252898|ref|YP_004596005.1| - 0.055 13.2 0.0 0.089 12.5 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family ATP-synt_ab PF00006.25 gi|336252898|ref|YP_004596005.1| - 0.082 12.6 0.0 0.087 12.5 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_5 PF07728.14 gi|336252898|ref|YP_004596005.1| - 0.11 12.5 0.1 0.21 11.6 0.1 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) ABC_tran PF00005.27 gi|336252899|ref|YP_004596006.1| - 2.1e-26 93.0 0.0 3.5e-26 92.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|336252899|ref|YP_004596006.1| - 1.2e-19 70.6 0.4 2.3e-19 69.7 0.4 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|336252899|ref|YP_004596006.1| - 1.5e-05 24.9 0.1 0.00014 21.8 0.0 2.0 1 1 1 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|336252899|ref|YP_004596006.1| - 0.038 13.4 0.0 0.15 11.5 0.0 1.7 1 1 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_5 PF07728.14 gi|336252899|ref|YP_004596006.1| - 0.064 13.3 0.0 0.12 12.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_25 PF13481.6 gi|336252899|ref|YP_004596006.1| - 0.15 11.6 0.1 1.3 8.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|336252899|ref|YP_004596006.1| - 0.21 11.5 0.0 0.35 10.8 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase BPD_transp_1 PF00528.22 gi|336252900|ref|YP_004596007.1| - 3.3e-32 111.7 11.6 4.6e-32 111.2 8.6 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|336252900|ref|YP_004596007.1| - 0.044 13.8 0.0 0.044 13.8 0.0 3.3 4 0 0 4 4 4 0 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.22 gi|336252901|ref|YP_004596008.1| - 1.3e-41 142.4 9.0 1.3e-41 142.4 9.0 1.9 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component HTH_psq PF05225.16 gi|336252901|ref|YP_004596008.1| - 0.12 12.1 0.0 0.28 10.9 0.0 1.6 1 0 0 1 1 1 0 helix-turn-helix, Psq domain Renin_r PF07850.14 gi|336252901|ref|YP_004596008.1| - 2.7 8.6 5.3 1.4 9.6 1.3 2.2 2 0 0 2 2 2 0 Renin receptor-like protein SBP_bac_5 PF00496.22 gi|336252902|ref|YP_004596009.1| - 6.7e-70 235.9 3.1 8.9e-70 235.5 3.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.9 gi|336252902|ref|YP_004596009.1| - 0.18 11.7 3.6 0.36 10.7 3.6 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF296 PF03479.15 gi|336252903|ref|YP_004596010.1| - 2e-17 63.5 0.0 2.5e-17 63.2 0.0 1.0 1 0 0 1 1 1 1 Plants and Prokaryotes Conserved (PCC) domain PolC_DP2 PF03833.13 gi|336252904|ref|YP_004596011.1| - 0 1322.4 0.0 0 1319.9 0.0 1.8 2 0 0 2 2 2 1 DNA polymerase II large subunit DP2 HypA PF01155.19 gi|336252904|ref|YP_004596011.1| - 0.0078 16.2 16.0 0.85 9.7 0.1 3.5 2 1 1 3 3 3 3 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc-ribbons_6 PF07191.12 gi|336252904|ref|YP_004596011.1| - 0.094 12.7 16.3 5.4 7.1 0.1 2.6 2 0 0 2 2 2 0 zinc-ribbons DZR PF12773.7 gi|336252904|ref|YP_004596011.1| - 0.19 11.8 18.1 2.4 8.3 0.5 2.9 2 1 0 2 2 2 0 Double zinc ribbon Calycin_like PF13944.6 gi|336252905|ref|YP_004596012.1| - 0.078 13.3 1.4 2.9 8.2 0.3 3.3 3 0 0 3 3 3 0 Calycin-like beta-barrel domain Fn3-like PF14310.6 gi|336252905|ref|YP_004596012.1| - 0.9 9.7 3.0 8.2 6.6 0.1 3.6 2 2 1 3 3 3 0 Fibronectin type III-like domain Big_1 PF02369.16 gi|336252905|ref|YP_004596012.1| - 3 7.9 12.3 15 5.7 0.4 4.3 4 1 0 4 4 4 0 Bacterial Ig-like domain (group 1) HypA PF01155.19 gi|336252906|ref|YP_004596013.1| - 0.0024 17.9 0.1 0.004 17.2 0.0 1.4 2 0 0 2 2 2 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Rubredoxin_2 PF18073.1 gi|336252906|ref|YP_004596013.1| - 0.0044 16.7 1.9 0.12 12.1 0.1 2.2 2 0 0 2 2 2 1 Rubredoxin metal binding domain NRDD PF13597.6 gi|336252906|ref|YP_004596013.1| - 0.022 13.5 0.3 0.029 13.2 0.3 1.1 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase DNA_RNApol_7kD PF03604.13 gi|336252906|ref|YP_004596013.1| - 0.054 13.2 1.3 0.093 12.4 1.3 1.3 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit DZR PF12773.7 gi|336252906|ref|YP_004596013.1| - 0.054 13.5 1.3 0.13 12.3 1.3 1.7 1 1 0 1 1 1 0 Double zinc ribbon Rubredoxin PF00301.20 gi|336252906|ref|YP_004596013.1| - 0.063 13.3 1.1 8.1 6.6 0.5 2.4 1 1 1 2 2 2 0 Rubredoxin Zn-ribbon_8 PF09723.10 gi|336252906|ref|YP_004596013.1| - 0.2 11.8 3.5 0.46 10.7 3.2 1.8 1 1 0 1 1 1 0 Zinc ribbon domain HalOD2 PF18547.1 gi|336252906|ref|YP_004596013.1| - 0.38 10.7 7.9 6.3 6.8 1.3 3.1 2 1 1 3 3 3 0 Halobacterial output domain 2 zinc_ribbon_2 PF13240.6 gi|336252906|ref|YP_004596013.1| - 0.48 10.2 5.1 0.82 9.5 1.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain HypA PF01155.19 gi|336252907|ref|YP_004596014.1| - 0.00019 21.4 0.0 0.00025 21.0 0.0 1.2 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ribbon_3 PF13248.6 gi|336252907|ref|YP_004596014.1| - 0.0015 17.9 1.2 0.6 9.6 0.3 2.4 2 0 0 2 2 2 2 zinc-ribbon domain Rubredoxin PF00301.20 gi|336252907|ref|YP_004596014.1| - 0.0042 17.1 2.0 1 9.5 0.7 2.3 1 1 1 2 2 2 2 Rubredoxin Rubredoxin_2 PF18073.1 gi|336252907|ref|YP_004596014.1| - 0.0093 15.7 3.9 0.18 11.6 0.6 2.2 2 0 0 2 2 2 1 Rubredoxin metal binding domain PRC PF05239.16 gi|336252907|ref|YP_004596014.1| - 0.021 14.9 0.1 0.028 14.5 0.1 1.3 1 0 0 1 1 1 0 PRC-barrel domain DZR PF12773.7 gi|336252907|ref|YP_004596014.1| - 0.021 14.8 0.3 0.029 14.4 0.3 1.4 1 1 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|336252907|ref|YP_004596014.1| - 0.056 13.2 4.3 0.44 10.3 0.6 2.1 1 1 1 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|336252907|ref|YP_004596014.1| - 0.17 12.0 3.1 0.41 10.8 3.2 1.6 1 1 0 1 1 1 0 Zinc ribbon domain Gar1 PF04410.14 gi|336252907|ref|YP_004596014.1| - 0.21 11.3 0.0 0.29 10.9 0.0 1.2 1 0 0 1 1 1 0 Gar1/Naf1 RNA binding region Anti-TRAP PF15777.5 gi|336252907|ref|YP_004596014.1| - 0.75 9.8 4.4 0.52 10.3 2.8 1.6 2 0 0 2 2 2 0 Tryptophan RNA-binding attenuator protein inhibitory protein HscB_4_cys PF18256.1 gi|336252907|ref|YP_004596014.1| - 0.76 9.6 7.5 8.8 6.2 8.0 2.3 1 1 1 2 2 2 0 Co-chaperone HscB tetracysteine metal binding motif HalOD2 PF18547.1 gi|336252907|ref|YP_004596014.1| - 0.99 9.4 6.8 3.6 7.6 0.5 2.6 3 0 0 3 3 3 0 Halobacterial output domain 2 ApbA_C PF08546.11 gi|336252908|ref|YP_004596015.1| - 2.8e-34 118.0 1.0 4.2e-34 117.4 1.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA C terminal ApbA PF02558.16 gi|336252908|ref|YP_004596015.1| - 3.1e-30 104.8 0.1 5.3e-30 104.1 0.1 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA DUF4392 PF14336.6 gi|336252908|ref|YP_004596015.1| - 0.028 13.9 0.9 0.044 13.2 0.4 1.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4392) NifU PF01106.17 gi|336252909|ref|YP_004596016.1| - 1.2e-13 51.0 0.0 1.8e-13 50.4 0.0 1.4 1 0 0 1 1 1 1 NifU-like domain DUF5605 PF18310.1 gi|336252910|ref|YP_004596017.1| - 0.025 14.5 0.0 0.039 13.8 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF5605) DUF2891 PF11199.8 gi|336252910|ref|YP_004596017.1| - 0.081 11.9 0.2 4.8 6.0 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2891) OmpH PF03938.14 gi|336252912|ref|YP_004596019.1| - 0.032 14.6 1.8 0.055 13.8 1.8 1.3 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) FadA PF09403.10 gi|336252912|ref|YP_004596019.1| - 0.11 13.0 1.7 0.21 12.1 1.2 1.6 2 0 0 2 2 2 0 Adhesion protein FadA GIT1_C PF12205.8 gi|336252912|ref|YP_004596019.1| - 0.31 11.2 2.1 0.35 11.0 0.1 2.1 3 0 0 3 3 3 0 G protein-coupled receptor kinase-interacting protein 1 C term DUF4164 PF13747.6 gi|336252912|ref|YP_004596019.1| - 0.37 11.1 12.8 4.3 7.7 2.7 3.7 4 1 0 4 4 4 0 Domain of unknown function (DUF4164) Syntaxin-6_N PF09177.11 gi|336252912|ref|YP_004596019.1| - 0.43 11.2 3.1 2.8 8.6 1.7 2.5 2 1 0 2 2 2 0 Syntaxin 6, N-terminal ZapB PF06005.12 gi|336252912|ref|YP_004596019.1| - 1 9.9 6.2 20 5.7 0.2 3.0 3 0 0 3 3 3 0 Cell division protein ZapB THOC7 PF05615.13 gi|336252912|ref|YP_004596019.1| - 1.1 9.6 8.3 0.28 11.5 4.3 1.9 2 0 0 2 2 2 0 Tho complex subunit 7 T7SS_ESX_EspC PF10824.8 gi|336252912|ref|YP_004596019.1| - 1.5 9.4 7.7 0.24 11.9 2.3 2.4 2 2 0 2 2 2 0 Excreted virulence factor EspC, type VII ESX diderm PHP_C PF13263.6 gi|336252914|ref|YP_004596021.1| - 3.6e-22 77.9 0.3 1.9e-21 75.5 0.2 2.1 2 0 0 2 2 2 1 PHP-associated PHP PF02811.19 gi|336252914|ref|YP_004596021.1| - 2.8e-05 24.5 0.0 6.5e-05 23.3 0.0 1.5 1 1 0 1 1 1 1 PHP domain DHHA1 PF02272.19 gi|336252915|ref|YP_004596022.1| - 4.4e-19 69.3 1.2 1e-18 68.0 1.2 1.7 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.20 gi|336252915|ref|YP_004596022.1| - 0.014 15.7 0.4 0.055 13.7 0.4 2.0 1 1 0 1 1 1 0 DHH family PGDYG PF14083.6 gi|336252915|ref|YP_004596022.1| - 0.062 13.5 0.0 0.15 12.3 0.0 1.6 1 0 0 1 1 1 0 PGDYG protein HEM4 PF02602.15 gi|336252916|ref|YP_004596023.1| - 1e-42 146.1 2.4 1.3e-42 145.8 2.4 1.0 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD TP_methylase PF00590.20 gi|336252917|ref|YP_004596024.1| - 1.9e-55 188.1 0.6 2.5e-55 187.7 0.6 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Porphobil_deam PF01379.20 gi|336252918|ref|YP_004596025.1| - 4.1e-66 222.4 0.5 1.7e-52 177.9 0.2 2.1 2 0 0 2 2 2 2 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.15 gi|336252918|ref|YP_004596025.1| - 5.3e-09 36.3 0.0 1.3e-08 35.1 0.0 1.6 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain DUF917 PF06032.12 gi|336252918|ref|YP_004596025.1| - 0.021 13.7 0.0 0.39 9.5 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF917) Bac_globin PF01152.21 gi|336252919|ref|YP_004596026.1| - 4.1e-23 81.8 0.2 4.6e-23 81.7 0.2 1.0 1 0 0 1 1 1 1 Bacterial-like globin Protoglobin PF11563.8 gi|336252919|ref|YP_004596026.1| - 0.00013 21.9 0.2 0.0003 20.7 0.2 1.7 1 1 0 1 1 1 1 Protoglobin Imm74 PF15603.6 gi|336252919|ref|YP_004596026.1| - 0.1 12.8 0.3 1.1 9.5 0.1 2.3 1 1 1 2 2 2 0 Immunity protein 74 COX1 PF00115.20 gi|336252920|ref|YP_004596027.1| - 3.2e-59 200.9 48.9 3.2e-59 200.9 48.9 1.5 2 0 0 2 2 2 1 Cytochrome C and Quinol oxidase polypeptide I DUF2871 PF11070.8 gi|336252920|ref|YP_004596027.1| - 0.0071 16.6 2.6 0.0071 16.6 2.6 2.6 2 0 0 2 2 2 1 Protein of unknown function (DUF2871) HATPase_c PF02518.26 gi|336252921|ref|YP_004596028.1| - 1.9e-15 57.3 0.0 3.3e-15 56.6 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA_4TM PF16926.5 gi|336252921|ref|YP_004596028.1| - 1.1e-08 34.9 3.0 2.4e-08 33.7 3.0 1.6 1 0 0 1 1 1 1 Archaeal 4TM region of histidine kinase HATPase_c_2 PF13581.6 gi|336252921|ref|YP_004596028.1| - 1.9e-08 34.3 0.0 4.8e-08 33.0 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HisKA PF00512.25 gi|336252921|ref|YP_004596028.1| - 7.1e-05 22.8 1.0 0.00014 21.8 0.2 1.9 1 1 1 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.6 gi|336252921|ref|YP_004596028.1| - 0.00077 19.3 0.0 0.0014 18.5 0.0 1.3 1 0 0 1 1 1 1 GHKL domain SPOB_a PF14689.6 gi|336252921|ref|YP_004596028.1| - 0.0082 15.8 0.2 0.016 14.9 0.2 1.4 1 0 0 1 1 1 1 Sensor_kinase_SpoOB-type, alpha-helical domain HATPase_c_3 PF13589.6 gi|336252921|ref|YP_004596028.1| - 0.0097 15.7 0.0 0.018 14.9 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OATP PF03137.20 gi|336252921|ref|YP_004596028.1| - 0.59 8.3 0.9 0.85 7.8 0.9 1.2 1 0 0 1 1 1 0 Organic Anion Transporter Polypeptide (OATP) family 2TM PF13239.6 gi|336252921|ref|YP_004596028.1| - 3.3 8.1 4.5 3.2 8.1 3.3 1.6 1 1 0 1 1 1 0 2TM domain DUF4381 PF14316.6 gi|336252921|ref|YP_004596028.1| - 4.4 7.5 9.5 1.3 9.2 4.9 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4381) Aminotran_3 PF00202.21 gi|336252922|ref|YP_004596029.1| - 1.3e-68 231.6 0.0 1.5e-68 231.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 gi|336252922|ref|YP_004596029.1| - 0.031 13.4 0.0 0.047 12.9 0.0 1.2 1 0 0 1 1 1 0 Aminotransferase class I and II Ammonium_transp PF00909.21 gi|336252923|ref|YP_004596030.1| - 1.1e-94 317.4 38.0 1.3e-94 317.2 38.0 1.0 1 0 0 1 1 1 1 Ammonium Transporter Family P-II PF00543.22 gi|336252923|ref|YP_004596030.1| - 5.6e-34 116.8 1.0 7.8e-34 116.3 0.1 1.8 2 0 0 2 2 2 1 Nitrogen regulatory protein P-II PsbY PF06298.11 gi|336252923|ref|YP_004596030.1| - 0.71 9.8 5.8 0.19 11.7 0.2 2.6 2 0 0 2 2 2 0 Photosystem II protein Y (PsbY) ALAD PF00490.21 gi|336252924|ref|YP_004596031.1| - 8.7e-142 471.9 0.0 1e-141 471.7 0.0 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase TrmB PF01978.19 gi|336252926|ref|YP_004596033.1| - 4.7e-21 74.4 0.4 9.4e-21 73.5 0.1 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Regulator_TrmB PF11495.8 gi|336252926|ref|YP_004596033.1| - 6.2e-05 22.3 0.1 8.5e-05 21.8 0.1 1.2 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB HTH_27 PF13463.6 gi|336252926|ref|YP_004596033.1| - 0.00018 21.9 0.4 0.0095 16.4 0.1 2.7 1 1 1 2 2 2 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.19 gi|336252926|ref|YP_004596033.1| - 0.00092 19.4 0.0 0.082 13.1 0.0 2.3 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.7 gi|336252926|ref|YP_004596033.1| - 0.0021 17.9 2.2 0.0025 17.6 0.3 2.1 2 1 1 3 3 3 1 MarR family HTH_IclR PF09339.10 gi|336252926|ref|YP_004596033.1| - 0.006 16.4 0.0 0.31 10.9 0.0 2.5 2 0 0 2 2 2 1 IclR helix-turn-helix domain RuvA_C PF07499.13 gi|336252926|ref|YP_004596033.1| - 0.038 14.5 3.0 2.3 8.8 0.1 3.4 3 0 0 3 3 3 0 RuvA, C-terminal domain Rrf2 PF02082.20 gi|336252926|ref|YP_004596033.1| - 0.049 14.0 0.0 0.1 13.0 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator LexA_DNA_bind PF01726.16 gi|336252926|ref|YP_004596033.1| - 0.067 13.0 0.0 0.33 10.7 0.0 2.2 3 0 0 3 3 3 0 LexA DNA binding domain HTH_23 PF13384.6 gi|336252926|ref|YP_004596033.1| - 0.075 12.9 0.1 0.19 11.6 0.1 1.7 1 0 0 1 1 1 0 Homeodomain-like domain HTH_20 PF12840.7 gi|336252926|ref|YP_004596033.1| - 0.12 12.5 0.3 0.34 11.0 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain PadR PF03551.14 gi|336252926|ref|YP_004596033.1| - 0.13 12.3 0.0 0.28 11.2 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family DUF2250 PF10007.9 gi|336252926|ref|YP_004596033.1| - 0.13 12.3 0.0 1.5 8.9 0.0 2.3 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) MCPVI PF02993.14 gi|336252926|ref|YP_004596033.1| - 0.15 11.9 0.1 0.2 11.4 0.1 1.2 1 0 0 1 1 1 0 Minor capsid protein VI Acetyltransf_1 PF00583.25 gi|336252927|ref|YP_004596034.1| - 3.6e-14 53.0 0.0 4.3e-14 52.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|336252927|ref|YP_004596034.1| - 2.1e-08 34.5 0.0 2.6e-08 34.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|336252927|ref|YP_004596034.1| - 7.9e-06 25.8 0.0 9.5e-06 25.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|336252927|ref|YP_004596034.1| - 0.0018 18.2 0.0 0.0028 17.6 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_CG PF14542.6 gi|336252927|ref|YP_004596034.1| - 0.0077 16.3 0.1 0.099 12.8 0.0 2.0 1 1 1 2 2 2 1 GCN5-related N-acetyl-transferase Fer4 PF00037.27 gi|336252928|ref|YP_004596035.1| - 7.1e-11 41.5 13.8 3.4e-07 29.8 5.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|336252928|ref|YP_004596035.1| - 6.9e-10 39.4 1.8 7.1e-05 23.3 0.4 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|336252928|ref|YP_004596035.1| - 3.6e-08 33.4 4.8 5.5e-08 32.9 4.8 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|336252928|ref|YP_004596035.1| - 3e-07 30.5 17.7 2.7e-05 24.2 7.4 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|336252928|ref|YP_004596035.1| - 3e-06 27.0 13.6 4e-05 23.5 5.3 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|336252928|ref|YP_004596035.1| - 6.3e-06 26.2 10.3 4.5e-05 23.5 10.4 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|336252928|ref|YP_004596035.1| - 7.2e-06 26.8 4.7 0.00029 21.7 1.1 2.4 2 0 0 2 2 2 1 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|336252928|ref|YP_004596035.1| - 1.3e-05 25.6 1.1 0.024 15.2 0.5 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|336252928|ref|YP_004596035.1| - 0.0001 22.7 6.4 0.0033 17.8 6.7 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|336252928|ref|YP_004596035.1| - 0.00033 20.6 11.1 0.0093 16.0 4.1 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|336252928|ref|YP_004596035.1| - 0.00064 20.0 1.6 0.00064 20.0 1.6 2.2 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_18 PF13746.6 gi|336252928|ref|YP_004596035.1| - 0.00075 19.7 3.1 0.00075 19.7 3.1 2.0 1 1 1 2 2 2 1 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|336252928|ref|YP_004596035.1| - 0.0023 18.7 4.1 0.0023 18.7 4.1 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain ETF_QO PF05187.13 gi|336252928|ref|YP_004596035.1| - 0.0024 18.0 0.1 0.003 17.6 0.1 1.1 1 0 0 1 1 1 1 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_13 PF13370.6 gi|336252928|ref|YP_004596035.1| - 0.0075 16.8 14.1 0.24 11.9 14.1 2.6 1 1 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I E3_UbLigase_RBR PF18091.1 gi|336252929|ref|YP_004596036.1| - 0.038 14.1 0.1 0.042 14.0 0.1 1.2 1 0 0 1 1 1 0 E3 Ubiquitin Ligase RBR C-terminal domain PHP PF02811.19 gi|336252930|ref|YP_004596037.1| - 3.9e-05 24.0 0.0 4.5e-05 23.8 0.0 1.3 1 1 0 1 1 1 1 PHP domain PHP_C PF13263.6 gi|336252930|ref|YP_004596037.1| - 0.0041 16.8 0.1 0.01 15.6 0.1 1.6 1 0 0 1 1 1 1 PHP-associated DUF2795 PF11387.8 gi|336252931|ref|YP_004596038.1| - 1.7e-05 24.9 0.0 3.2e-05 24.1 0.0 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF2795) GvpG PF05120.12 gi|336252933|ref|YP_004596040.1| - 3.6 7.7 6.2 11 6.1 0.3 2.3 1 1 1 2 2 2 0 Gas vesicle protein G CxxCxxCC PF03692.15 gi|336252934|ref|YP_004596041.1| - 0.0002 22.0 2.5 0.0074 17.0 2.5 2.3 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain CMD PF02627.20 gi|336252934|ref|YP_004596041.1| - 2.6 8.2 5.8 3.7 7.7 0.3 2.4 2 0 0 2 2 2 0 Carboxymuconolactone decarboxylase family Helicase_C_2 PF13307.6 gi|336252936|ref|YP_004596043.1| - 3.5e-21 76.1 0.0 5.2e-21 75.6 0.0 1.2 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.15 gi|336252936|ref|YP_004596043.1| - 5.3e-06 26.2 0.0 8.7e-06 25.5 0.0 1.3 1 0 0 1 1 1 1 DEAD_2 AAA_22 PF13401.6 gi|336252936|ref|YP_004596043.1| - 7.6e-05 23.0 0.0 0.00029 21.1 0.0 1.9 1 1 0 1 1 1 1 AAA domain ResIII PF04851.15 gi|336252936|ref|YP_004596043.1| - 9e-05 22.5 0.0 0.034 14.2 0.0 2.7 3 0 0 3 3 3 1 Type III restriction enzyme, res subunit AAA_30 PF13604.6 gi|336252936|ref|YP_004596043.1| - 0.00033 20.4 0.2 0.72 9.5 0.0 2.4 2 0 0 2 2 2 2 AAA domain DEAD PF00270.29 gi|336252936|ref|YP_004596043.1| - 0.00035 20.4 0.0 0.14 11.9 0.0 2.4 2 0 0 2 2 2 2 DEAD/DEAH box helicase AAA_16 PF13191.6 gi|336252936|ref|YP_004596043.1| - 0.0028 18.1 0.2 0.028 14.8 0.1 2.6 2 1 0 2 2 2 1 AAA ATPase domain OrsD PF12013.8 gi|336252936|ref|YP_004596043.1| - 0.02 15.3 0.1 0.046 14.2 0.1 1.5 1 0 0 1 1 1 0 Orsellinic acid/F9775 biosynthesis cluster protein D Mg_chelatase PF01078.21 gi|336252936|ref|YP_004596043.1| - 0.02 14.3 0.0 0.034 13.5 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI DXP_redisom_C PF08436.12 gi|336252936|ref|YP_004596043.1| - 0.037 14.2 0.0 0.11 12.7 0.0 1.7 2 0 0 2 2 2 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain PhoH PF02562.16 gi|336252936|ref|YP_004596043.1| - 0.046 13.2 0.0 0.086 12.3 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein PRO8NT PF08082.11 gi|336252936|ref|YP_004596043.1| - 0.075 13.0 0.1 0.15 12.0 0.1 1.4 1 0 0 1 1 1 0 PRO8NT (NUC069), PrP8 N-terminal domain AAA_19 PF13245.6 gi|336252936|ref|YP_004596043.1| - 0.1 13.0 0.0 0.26 11.6 0.0 1.6 1 1 0 1 1 1 0 AAA domain DUF2075 PF09848.9 gi|336252936|ref|YP_004596043.1| - 0.16 11.2 0.0 3.7 6.7 0.0 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) gpUL132 PF11359.8 gi|336252937|ref|YP_004596044.1| - 0.11 12.1 0.1 0.11 12.1 0.1 1.0 1 0 0 1 1 1 0 Glycoprotein UL132 Met_10 PF02475.16 gi|336252938|ref|YP_004596045.1| - 8.9e-49 165.9 0.0 2.2e-47 161.4 0.0 2.1 2 0 0 2 2 2 1 Met-10+ like-protein Methyltransf_25 PF13649.6 gi|336252938|ref|YP_004596045.1| - 6.6e-05 23.5 0.0 0.00018 22.1 0.0 1.8 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|336252938|ref|YP_004596045.1| - 0.00011 21.8 0.0 0.00016 21.3 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase MTS PF05175.14 gi|336252938|ref|YP_004596045.1| - 0.00043 19.9 0.0 0.0017 17.9 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase small domain tRNA_U5-meth_tr PF05958.11 gi|336252938|ref|YP_004596045.1| - 0.019 14.0 0.0 0.028 13.4 0.0 1.2 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase DNA_methylase PF00145.17 gi|336252938|ref|YP_004596045.1| - 0.023 14.1 0.0 0.031 13.6 0.0 1.2 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase Trm5_N PF18093.1 gi|336252938|ref|YP_004596045.1| - 0.023 14.6 1.3 0.089 12.7 1.3 2.0 1 1 0 1 1 1 0 tRNA methyltransferase 5 N-terminal domain PrmA PF06325.13 gi|336252938|ref|YP_004596045.1| - 0.056 12.8 0.0 0.096 12.1 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_11 PF08241.12 gi|336252938|ref|YP_004596045.1| - 0.071 13.8 0.0 0.24 12.1 0.0 2.0 1 1 0 1 1 1 0 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|336252938|ref|YP_004596045.1| - 0.11 12.1 0.0 0.2 11.3 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 95 NMD3 PF04981.13 gi|336252939|ref|YP_004596046.1| - 1.9e-64 217.4 0.1 2.4e-64 217.1 0.1 1.1 1 0 0 1 1 1 1 NMD3 family Rpr2 PF04032.16 gi|336252939|ref|YP_004596046.1| - 0.00046 20.4 0.4 0.043 14.1 0.0 3.1 3 0 0 3 3 3 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain DZR PF12773.7 gi|336252939|ref|YP_004596046.1| - 0.0036 17.3 5.9 0.17 11.9 3.8 3.0 2 1 0 2 2 2 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|336252939|ref|YP_004596046.1| - 0.0053 16.4 4.4 0.65 9.8 0.1 3.5 3 0 0 3 3 3 1 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|336252939|ref|YP_004596046.1| - 0.037 13.4 4.4 3.9 7.0 0.2 3.4 3 0 0 3 3 3 0 zinc-ribbon domain PknG_rubred PF16919.5 gi|336252939|ref|YP_004596046.1| - 0.039 14.1 5.3 0.21 11.8 0.7 3.0 2 1 1 3 3 3 0 Protein kinase G rubredoxin domain FYVE PF01363.21 gi|336252939|ref|YP_004596046.1| - 0.054 13.6 1.7 5.3 7.2 1.0 2.9 2 1 0 2 2 2 0 FYVE zinc finger DUF2703 PF10865.8 gi|336252939|ref|YP_004596046.1| - 0.087 13.0 0.1 0.27 11.4 0.0 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF2703) NOB1_Zn_bind PF08772.11 gi|336252939|ref|YP_004596046.1| - 0.13 12.4 1.7 4.1 7.6 0.0 3.2 3 0 0 3 3 3 0 Nin one binding (NOB1) Zn-ribbon like zf_UBZ PF18439.1 gi|336252939|ref|YP_004596046.1| - 0.22 11.2 6.5 2.4 7.8 0.1 3.4 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger GFA PF04828.14 gi|336252939|ref|YP_004596046.1| - 0.27 11.6 3.7 11 6.5 0.1 3.4 2 1 1 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme Nudix_N_2 PF14803.6 gi|336252939|ref|YP_004596046.1| - 6.8 6.7 21.9 2.3 8.2 0.1 4.5 6 0 0 6 6 6 0 Nudix N-terminal UPF0547 PF10571.9 gi|336252939|ref|YP_004596046.1| - 9.2 6.5 8.6 29 4.9 0.7 3.3 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 Peptidase_M48 PF01435.18 gi|336252940|ref|YP_004596047.1| - 2.3e-44 151.6 0.0 3.6e-44 150.9 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|336252940|ref|YP_004596047.1| - 3.9e-10 39.4 0.3 1.2e-08 34.5 0.0 2.2 2 0 0 2 2 2 1 BlaR1 peptidase M56 SprT-like PF10263.9 gi|336252940|ref|YP_004596047.1| - 0.013 15.3 0.0 0.02 14.7 0.0 1.3 1 0 0 1 1 1 0 SprT-like family DUF996 PF06195.13 gi|336252940|ref|YP_004596047.1| - 0.023 15.0 0.5 0.023 15.0 0.5 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF996) DUF4157 PF13699.6 gi|336252940|ref|YP_004596047.1| - 0.084 13.1 0.1 0.19 12.0 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4157) Tetraspanin PF00335.20 gi|336252941|ref|YP_004596048.1| - 0.12 12.1 0.0 0.16 11.7 0.0 1.2 1 0 0 1 1 1 0 Tetraspanin family SecE PF00584.20 gi|336252941|ref|YP_004596048.1| - 0.3 11.1 3.9 1.6 8.7 0.1 2.1 2 0 0 2 2 2 0 SecE/Sec61-gamma subunits of protein translocation complex GRA6 PF05084.13 gi|336252942|ref|YP_004596049.1| - 3.9 7.4 8.8 0.26 11.2 0.9 2.5 2 1 1 3 3 3 0 Granule antigen protein (GRA6) DNA_primase_lrg PF04104.14 gi|336252943|ref|YP_004596050.1| - 8.6e-34 117.1 0.0 1.4e-33 116.4 0.0 1.3 1 0 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit Abhydrolase_1 PF00561.20 gi|336252944|ref|YP_004596051.1| - 2.1e-26 93.1 0.0 5.6e-24 85.2 0.0 2.0 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|336252944|ref|YP_004596051.1| - 7.4e-22 79.0 7.8 8.8e-22 78.8 7.8 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|336252944|ref|YP_004596051.1| - 6.9e-18 64.8 0.0 1.8e-17 63.4 0.0 1.5 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_4 PF08386.10 gi|336252944|ref|YP_004596051.1| - 0.00017 21.7 0.0 0.00028 20.9 0.0 1.3 1 0 0 1 1 1 1 TAP-like protein Peptidase_S9 PF00326.21 gi|336252944|ref|YP_004596051.1| - 0.0014 18.2 0.0 0.012 15.1 0.0 2.3 3 0 0 3 3 3 1 Prolyl oligopeptidase family Abhydrolase_5 PF12695.7 gi|336252944|ref|YP_004596051.1| - 0.0016 18.2 0.0 0.72 9.6 0.0 2.2 2 0 0 2 2 2 2 Alpha/beta hydrolase family DLH PF01738.18 gi|336252944|ref|YP_004596051.1| - 0.0088 15.6 0.0 0.079 12.5 0.0 2.0 2 0 0 2 2 2 1 Dienelactone hydrolase family FSH1 PF03959.13 gi|336252944|ref|YP_004596051.1| - 0.018 14.7 0.0 0.032 13.9 0.0 1.3 1 0 0 1 1 1 0 Serine hydrolase (FSH1) DUF2048 PF09752.9 gi|336252944|ref|YP_004596051.1| - 0.022 13.8 0.0 0.98 8.5 0.0 2.0 2 0 0 2 2 2 0 Abhydrolase domain containing 18 Patatin PF01734.22 gi|336252944|ref|YP_004596051.1| - 0.032 14.4 0.0 0.045 13.9 0.0 1.3 1 0 0 1 1 1 0 Patatin-like phospholipase UPF0227 PF05728.12 gi|336252944|ref|YP_004596051.1| - 0.034 14.1 0.0 0.28 11.1 0.1 2.0 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0227) Ndr PF03096.14 gi|336252944|ref|YP_004596051.1| - 0.11 11.2 0.0 0.16 10.6 0.0 1.2 1 0 0 1 1 1 0 Ndr family LIP PF03583.14 gi|336252944|ref|YP_004596051.1| - 0.16 11.2 0.2 14 4.9 0.2 2.2 2 0 0 2 2 2 0 Secretory lipase HalOD1 PF18545.1 gi|336252945|ref|YP_004596052.1| - 2.4e-26 91.8 0.8 3.3e-26 91.4 0.8 1.2 1 0 0 1 1 1 1 Halobacterial output domain 1 HTH_10 PF04967.12 gi|336252946|ref|YP_004596053.1| - 1e-15 57.2 0.0 1.5e-15 56.7 0.0 1.2 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|336252946|ref|YP_004596053.1| - 0.0011 18.9 0.0 0.0013 18.6 0.0 1.2 1 0 0 1 1 1 1 GAF and HTH_10 associated domain PCNA_N PF00705.18 gi|336252947|ref|YP_004596054.1| - 7.4e-09 35.4 0.1 1.3e-08 34.6 0.1 1.4 1 0 0 1 1 1 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.15 gi|336252947|ref|YP_004596054.1| - 2.1e-05 24.7 0.0 6.4e-05 23.1 0.0 1.9 2 1 0 2 2 2 1 Proliferating cell nuclear antigen, C-terminal domain Rad9 PF04139.13 gi|336252947|ref|YP_004596054.1| - 0.094 12.1 0.0 0.16 11.4 0.0 1.3 1 0 0 1 1 1 0 Rad9 PYRIN PF02758.16 gi|336252948|ref|YP_004596055.1| - 0.064 13.4 0.0 0.081 13.1 0.0 1.1 1 0 0 1 1 1 0 PAAD/DAPIN/Pyrin domain Usp PF00582.26 gi|336252949|ref|YP_004596056.1| - 1.7e-34 119.4 2.3 1.9e-34 119.2 2.3 1.0 1 0 0 1 1 1 1 Universal stress protein family baeRF_family10 PF18854.1 gi|336252949|ref|YP_004596056.1| - 0.0045 17.2 0.7 0.0069 16.6 0.7 1.6 1 1 0 1 1 1 1 Bacterial archaeo-eukaryotic release factor family 10 OmpH PF03938.14 gi|336252949|ref|YP_004596056.1| - 0.066 13.5 0.0 0.079 13.3 0.0 1.2 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) pPIWI_RE_Y PF18156.1 gi|336252949|ref|YP_004596056.1| - 0.13 12.7 1.3 2 8.9 1.2 2.6 1 1 1 2 2 2 0 pPIWI_RE three-gene island domain Y UDG PF03167.19 gi|336252950|ref|YP_004596057.1| - 1.3e-38 132.4 0.0 1.7e-38 132.1 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily FtsJ PF01728.19 gi|336252952|ref|YP_004596059.1| - 6.3e-56 189.3 0.0 7.5e-56 189.0 0.0 1.1 1 0 0 1 1 1 1 FtsJ-like methyltransferase TRAM PF01938.20 gi|336252952|ref|YP_004596059.1| - 3.3e-12 46.2 0.5 3.3e-12 46.2 0.5 1.8 2 0 0 2 2 2 1 TRAM domain Methyltransf_31 PF13847.6 gi|336252952|ref|YP_004596059.1| - 4.7e-05 23.2 0.0 0.00028 20.7 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|336252952|ref|YP_004596059.1| - 0.00032 21.4 0.0 0.00072 20.2 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|336252952|ref|YP_004596059.1| - 0.019 14.8 0.0 0.041 13.7 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain PCMT PF01135.19 gi|336252952|ref|YP_004596059.1| - 0.033 14.0 0.0 0.29 10.9 0.0 2.1 2 1 0 2 2 2 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MaoC_dehydratas PF01575.19 gi|336252952|ref|YP_004596059.1| - 0.044 13.4 0.0 0.085 12.4 0.0 1.4 1 0 0 1 1 1 0 MaoC like domain PrmA PF06325.13 gi|336252952|ref|YP_004596059.1| - 0.1 12.0 0.2 0.15 11.4 0.2 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) RHH_1 PF01402.21 gi|336252953|ref|YP_004596060.1| - 0.00029 20.7 1.5 0.00074 19.4 0.1 2.1 1 1 1 2 2 2 1 Ribbon-helix-helix protein, copG family RHH_8 PF17723.1 gi|336252953|ref|YP_004596060.1| - 0.0043 17.2 0.0 0.0043 17.2 0.0 1.1 1 0 0 1 1 1 1 Ribbon-Helix-Helix transcriptional regulator family TatC PF00902.18 gi|336252954|ref|YP_004596061.1| - 5.9e-74 248.4 37.6 1.5e-41 142.5 14.7 2.6 3 0 0 3 3 3 2 Sec-independent protein translocase protein (TatC) TatC PF00902.18 gi|336252955|ref|YP_004596062.1| - 4.3e-37 128.0 18.1 5.3e-37 127.7 18.1 1.1 1 0 0 1 1 1 1 Sec-independent protein translocase protein (TatC) AF-4 PF05110.13 gi|336252955|ref|YP_004596062.1| - 0.02 13.0 15.0 0.025 12.7 15.0 1.0 1 0 0 1 1 1 0 AF-4 proto-oncoprotein IMUP PF15761.5 gi|336252955|ref|YP_004596062.1| - 1 10.1 11.6 1.8 9.3 11.6 1.3 1 0 0 1 1 1 0 Immortalisation up-regulated protein Molybdopterin PF00384.22 gi|336252956|ref|YP_004596063.1| - 3.7e-50 171.2 0.0 4.6e-50 170.8 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|336252956|ref|YP_004596063.1| - 2.5e-15 56.5 0.1 7.1e-14 51.8 0.1 2.5 1 1 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|336252956|ref|YP_004596063.1| - 3.5e-06 26.9 2.1 9.5e-06 25.5 2.1 1.8 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain MFS_1 PF07690.16 gi|336252957|ref|YP_004596064.1| - 2.9e-26 92.2 69.8 5.6e-19 68.3 35.2 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily PapC_C PF13953.6 gi|336252957|ref|YP_004596064.1| - 0.063 13.1 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 PapC C-terminal domain NIR_SIR PF01077.22 gi|336252958|ref|YP_004596065.1| - 6.6e-47 159.0 0.1 3.4e-31 107.9 0.0 2.4 2 0 0 2 2 2 2 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 gi|336252958|ref|YP_004596065.1| - 2.4e-35 120.2 0.1 2.7e-16 59.2 0.0 3.2 2 1 0 2 2 2 2 Nitrite/Sulfite reductase ferredoxin-like half domain DGC PF08859.11 gi|336252958|ref|YP_004596065.1| - 0.073 13.2 0.5 0.98 9.6 0.0 2.4 2 0 0 2 2 2 0 DGC domain Asn_synthase PF00733.21 gi|336252961|ref|YP_004596068.1| - 4.1e-11 43.2 1.5 4.8e-11 42.9 1.5 1.3 1 1 0 1 1 1 1 Asparagine synthase tRNA_Me_trans PF03054.16 gi|336252961|ref|YP_004596068.1| - 4.6e-09 35.5 0.0 4.2e-06 25.8 0.0 2.3 2 0 0 2 2 2 2 tRNA methyl transferase NAD_synthase PF02540.17 gi|336252961|ref|YP_004596068.1| - 1.7e-08 33.9 0.0 2.9e-08 33.1 0.0 1.3 1 0 0 1 1 1 1 NAD synthase QueC PF06508.13 gi|336252961|ref|YP_004596068.1| - 8.2e-06 25.5 0.0 4.5e-05 23.0 0.0 2.0 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.20 gi|336252961|ref|YP_004596068.1| - 0.0011 18.7 0.0 0.0026 17.5 0.0 1.6 1 0 0 1 1 1 1 PP-loop family QueH PF02677.14 gi|336252961|ref|YP_004596068.1| - 0.0092 16.1 0.1 0.016 15.3 0.1 1.4 1 0 0 1 1 1 1 Epoxyqueuosine reductase QueH Arginosuc_synth PF00764.19 gi|336252961|ref|YP_004596068.1| - 0.012 14.9 0.1 0.021 14.2 0.1 1.3 1 0 0 1 1 1 0 Arginosuccinate synthase PAPS_reduct PF01507.19 gi|336252961|ref|YP_004596068.1| - 0.12 12.4 0.0 0.24 11.4 0.0 1.5 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family GFO_IDH_MocA PF01408.22 gi|336252962|ref|YP_004596069.1| - 7e-25 88.2 0.0 2.5e-24 86.4 0.0 2.0 3 0 0 3 3 3 1 Oxidoreductase family, NAD-binding Rossmann fold F420_oxidored PF03807.17 gi|336252962|ref|YP_004596069.1| - 0.036 14.7 0.0 0.077 13.6 0.0 1.6 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent ThuA PF06283.11 gi|336252963|ref|YP_004596070.1| - 2.7e-31 109.4 0.0 8.4e-31 107.8 0.0 1.7 1 1 0 1 1 1 1 Trehalose utilisation MarR_2 PF12802.7 gi|336252965|ref|YP_004596072.1| - 0.013 15.3 0.0 0.042 13.7 0.0 1.8 2 0 0 2 2 2 0 MarR family DUF505 PF04458.12 gi|336252965|ref|YP_004596072.1| - 0.025 13.0 0.0 0.031 12.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) HTH_IclR PF09339.10 gi|336252965|ref|YP_004596072.1| - 0.056 13.3 0.0 0.1 12.4 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF4148 PF13663.6 gi|336252965|ref|YP_004596072.1| - 0.11 12.7 0.1 0.44 10.8 0.1 2.2 1 1 0 1 1 1 0 Domain of unknown function (DUF4148) HTH_Crp_2 PF13545.6 gi|336252965|ref|YP_004596072.1| - 0.11 12.5 0.0 0.18 11.8 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain DUF326 PF03860.16 gi|336252967|ref|YP_004596074.1| - 3.3e-07 30.1 50.7 0.0013 18.6 4.1 4.9 4 1 1 5 5 5 4 Domain of Unknown Function (DUF326) HDOD PF08668.12 gi|336252967|ref|YP_004596074.1| - 0.086 12.3 1.5 0.4 10.1 1.1 1.9 1 1 1 2 2 2 0 HDOD domain GAT PF03127.14 gi|336252967|ref|YP_004596074.1| - 0.1 12.9 0.1 0.1 12.9 0.1 2.0 2 0 0 2 2 2 0 GAT domain SPW PF03779.14 gi|336252968|ref|YP_004596075.1| - 3.2e-10 39.4 24.7 1.3e-05 24.7 8.9 2.3 2 0 0 2 2 2 2 SPW repeat ThrE PF06738.12 gi|336252968|ref|YP_004596075.1| - 0.04 13.3 3.4 0.058 12.7 3.1 1.4 1 1 0 1 1 1 0 Putative threonine/serine exporter Glyco_hydro_15 PF00723.21 gi|336252969|ref|YP_004596076.1| - 8.3e-49 166.6 0.0 1.1e-43 149.7 0.0 2.1 1 1 1 2 2 2 2 Glycosyl hydrolases family 15 TPR_4 PF07721.14 gi|336252969|ref|YP_004596076.1| - 0.0018 18.7 0.6 0.051 14.2 0.2 3.4 3 0 0 3 3 3 1 Tetratricopeptide repeat TPR_12 PF13424.6 gi|336252969|ref|YP_004596076.1| - 0.047 14.0 0.1 7 7.0 0.0 2.7 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_2 PF07719.17 gi|336252969|ref|YP_004596076.1| - 0.11 12.6 0.7 8.5 6.8 0.1 2.8 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_9 PF13371.6 gi|336252969|ref|YP_004596076.1| - 0.79 9.9 3.3 4.9 7.4 0.1 3.5 4 0 0 4 4 4 0 Tetratricopeptide repeat VKOR PF07884.14 gi|336252970|ref|YP_004596077.1| - 9.1e-15 54.9 6.7 9.1e-15 54.9 6.7 3.1 3 2 0 3 3 3 1 Vitamin K epoxide reductase family SPW PF03779.14 gi|336252970|ref|YP_004596077.1| - 3.1e-05 23.5 48.7 0.0015 18.0 6.7 5.3 5 0 0 5 5 5 4 SPW repeat Holin_SPP1 PF04688.13 gi|336252970|ref|YP_004596077.1| - 0.53 10.5 3.1 4.1 7.6 0.1 2.8 2 0 0 2 2 2 0 SPP1 phage holin adh_short PF00106.25 gi|336252971|ref|YP_004596078.1| - 2.9e-43 147.6 0.2 3.9e-43 147.2 0.2 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|336252971|ref|YP_004596078.1| - 1.4e-30 106.6 0.1 1.7e-30 106.3 0.1 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|336252971|ref|YP_004596078.1| - 7.8e-15 55.2 0.2 1.1e-14 54.8 0.2 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|336252971|ref|YP_004596078.1| - 0.14 11.6 0.3 0.39 10.1 0.3 1.8 1 1 0 1 1 1 0 NAD dependent epimerase/dehydratase family DUF892 PF05974.12 gi|336252973|ref|YP_004596080.1| - 4e-26 91.9 1.8 4.9e-26 91.6 1.8 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF892) SlyX PF04102.12 gi|336252973|ref|YP_004596080.1| - 0.04 14.5 1.3 0.87 10.3 0.2 2.7 2 1 0 2 2 2 0 SlyX GDH_N PF12466.8 gi|336252973|ref|YP_004596080.1| - 0.041 14.1 0.0 0.06 13.6 0.0 1.3 1 0 0 1 1 1 0 Glutamate dehydrogenase N terminal DUF892 PF05974.12 gi|336252974|ref|YP_004596081.1| - 1.2e-15 57.8 0.7 1.4e-14 54.4 0.7 1.9 1 1 0 1 1 1 1 Domain of unknown function (DUF892) DASH_Dad3 PF08656.10 gi|336252974|ref|YP_004596081.1| - 0.032 14.3 0.5 0.088 12.9 0.3 1.9 2 0 0 2 2 2 0 DASH complex subunit Dad3 MOSC_N PF03476.16 gi|336252976|ref|YP_004596083.1| - 3.2e-14 52.8 0.0 5.1e-14 52.2 0.0 1.5 1 1 0 1 1 1 1 MOSC N-terminal beta barrel domain MOSC PF03473.17 gi|336252976|ref|YP_004596083.1| - 5e-07 29.8 0.0 7.3e-07 29.3 0.0 1.3 1 0 0 1 1 1 1 MOSC domain DUF368 PF04018.13 gi|336252978|ref|YP_004596085.1| - 6.2e-57 193.0 19.3 7.8e-57 192.7 19.3 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF368) MutS_V PF00488.21 gi|336252979|ref|YP_004596086.1| - 3.1e-09 37.1 0.6 5e-09 36.5 0.1 1.6 2 0 0 2 2 2 1 MutS domain V HHH_5 PF14520.6 gi|336252979|ref|YP_004596086.1| - 6.7e-08 33.0 5.3 1.1e-07 32.3 0.4 3.1 3 0 0 3 3 3 1 Helix-hairpin-helix domain HHH PF00633.23 gi|336252979|ref|YP_004596086.1| - 1.8e-05 24.4 0.8 0.0013 18.5 0.1 3.2 2 0 0 2 2 2 1 Helix-hairpin-helix motif AAA_21 PF13304.6 gi|336252979|ref|YP_004596086.1| - 0.017 14.9 0.0 0.32 10.8 0.0 2.2 2 0 0 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system Transposase_20 PF02371.16 gi|336252979|ref|YP_004596086.1| - 0.13 12.6 0.0 0.51 10.7 0.0 2.0 2 0 0 2 2 2 0 Transposase IS116/IS110/IS902 family AAA PF00004.29 gi|336252979|ref|YP_004596086.1| - 0.26 11.7 0.9 0.62 10.5 0.0 2.1 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) DUF1059 PF06348.11 gi|336252980|ref|YP_004596087.1| - 1.9e-07 31.2 0.1 2.7e-07 30.7 0.1 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF1059) GFO_IDH_MocA PF01408.22 gi|336252981|ref|YP_004596088.1| - 4e-22 79.3 0.0 7.8e-22 78.4 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_3 PF03447.16 gi|336252981|ref|YP_004596088.1| - 2.2e-06 28.3 0.1 4.9e-06 27.2 0.1 1.5 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|336252981|ref|YP_004596088.1| - 0.029 13.7 0.0 0.063 12.6 0.0 1.7 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|336252981|ref|YP_004596088.1| - 0.064 13.5 0.2 0.18 12.1 0.2 1.8 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain GFO_IDH_MocA_C PF02894.17 gi|336252981|ref|YP_004596088.1| - 0.079 13.0 0.0 0.18 11.8 0.0 1.7 1 0 0 1 1 1 0 Oxidoreductase family, C-terminal alpha/beta domain Cpn60_TCP1 PF00118.24 gi|336252982|ref|YP_004596089.1| - 2.7e-133 445.2 0.4 3.2e-133 444.9 0.4 1.1 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family DUF3509 PF12021.8 gi|336252982|ref|YP_004596089.1| - 0.025 14.3 0.0 0.069 12.9 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3509) FmdA_AmdA PF03069.15 gi|336252983|ref|YP_004596090.1| - 5.4e-156 519.1 0.0 6.2e-156 518.9 0.0 1.0 1 0 0 1 1 1 1 Acetamidase/Formamidase family AAA_16 PF13191.6 gi|336252984|ref|YP_004596091.1| - 4.7e-14 53.1 0.1 1.2e-11 45.3 0.0 2.7 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|336252984|ref|YP_004596091.1| - 4.9e-10 39.8 0.0 1e-09 38.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA PF00004.29 gi|336252984|ref|YP_004596091.1| - 9.3e-06 26.1 0.0 2.4e-05 24.8 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 gi|336252984|ref|YP_004596091.1| - 1.3e-05 24.8 0.0 0.00039 20.0 0.0 2.2 2 0 0 2 2 2 1 P-loop containing dynein motor region MarR_2 PF12802.7 gi|336252984|ref|YP_004596091.1| - 0.00074 19.3 0.0 0.0025 17.6 0.0 1.9 1 1 0 1 1 1 1 MarR family AAA_11 PF13086.6 gi|336252984|ref|YP_004596091.1| - 0.00084 19.2 0.0 0.0016 18.3 0.0 1.5 2 0 0 2 2 1 1 AAA domain Cdc6_C PF09079.11 gi|336252984|ref|YP_004596091.1| - 0.0009 19.2 0.0 0.0032 17.4 0.0 2.0 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_35 PF14516.6 gi|336252984|ref|YP_004596091.1| - 0.001 18.0 0.0 0.037 12.9 0.0 2.3 2 0 0 2 2 2 1 AAA-like domain AAA_33 PF13671.6 gi|336252984|ref|YP_004596091.1| - 0.0013 18.9 0.0 0.0031 17.7 0.0 1.8 1 1 0 1 1 1 1 AAA domain T2SSE PF00437.20 gi|336252984|ref|YP_004596091.1| - 0.0016 17.6 0.0 0.0025 16.9 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein IstB_IS21 PF01695.17 gi|336252984|ref|YP_004596091.1| - 0.002 17.9 0.0 1.3 8.7 0.0 2.6 2 0 0 2 2 2 1 IstB-like ATP binding protein Viral_helicase1 PF01443.18 gi|336252984|ref|YP_004596091.1| - 0.0029 17.4 0.0 0.0044 16.8 0.0 1.3 1 0 0 1 1 1 1 Viral (Superfamily 1) RNA helicase AAA_32 PF13654.6 gi|336252984|ref|YP_004596091.1| - 0.0039 16.0 0.0 1.1 7.9 0.0 2.2 2 0 0 2 2 2 1 AAA domain TIP49_C PF17856.1 gi|336252984|ref|YP_004596091.1| - 0.004 17.2 0.0 0.01 16.0 0.0 1.7 1 0 0 1 1 1 1 TIP49 AAA-lid domain AAA_30 PF13604.6 gi|336252984|ref|YP_004596091.1| - 0.0051 16.6 0.2 0.014 15.1 0.0 1.8 3 0 0 3 3 1 1 AAA domain HTH_27 PF13463.6 gi|336252984|ref|YP_004596091.1| - 0.0059 17.1 0.1 0.014 15.8 0.1 1.7 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF815 PF05673.13 gi|336252984|ref|YP_004596091.1| - 0.0062 15.7 0.0 0.029 13.5 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF815) NTPase_1 PF03266.15 gi|336252984|ref|YP_004596091.1| - 0.0065 16.4 0.0 0.015 15.2 0.0 1.6 1 0 0 1 1 1 1 NTPase Sigma54_activat PF00158.26 gi|336252984|ref|YP_004596091.1| - 0.0066 16.2 0.0 0.012 15.4 0.0 1.3 1 0 0 1 1 1 1 Sigma-54 interaction domain NACHT PF05729.12 gi|336252984|ref|YP_004596091.1| - 0.0074 16.2 0.0 0.018 14.9 0.0 1.7 1 1 0 1 1 1 1 NACHT domain AAA_14 PF13173.6 gi|336252984|ref|YP_004596091.1| - 0.008 16.2 0.1 0.092 12.8 0.1 2.3 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|336252984|ref|YP_004596091.1| - 0.0092 16.5 0.0 0.023 15.2 0.0 1.8 1 1 0 1 1 1 1 AAA domain TniB PF05621.11 gi|336252984|ref|YP_004596091.1| - 0.011 15.2 0.0 0.023 14.1 0.0 1.5 1 0 0 1 1 1 0 Bacterial TniB protein AAA_19 PF13245.6 gi|336252984|ref|YP_004596091.1| - 0.016 15.5 0.0 0.036 14.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|336252984|ref|YP_004596091.1| - 0.016 14.5 0.0 0.031 13.5 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin Bac_DnaA PF00308.18 gi|336252984|ref|YP_004596091.1| - 0.027 14.3 0.0 0.099 12.5 0.0 1.8 2 0 0 2 2 2 0 Bacterial dnaA protein DUF2075 PF09848.9 gi|336252984|ref|YP_004596091.1| - 0.03 13.6 0.0 0.047 12.9 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) RNA_helicase PF00910.22 gi|336252984|ref|YP_004596091.1| - 0.034 14.6 0.0 0.075 13.4 0.0 1.6 1 0 0 1 1 1 0 RNA helicase Rad17 PF03215.15 gi|336252984|ref|YP_004596091.1| - 0.05 13.5 0.0 0.08 12.9 0.0 1.5 1 1 0 1 1 1 0 Rad17 P-loop domain AAA_28 PF13521.6 gi|336252984|ref|YP_004596091.1| - 0.063 13.5 0.0 0.17 12.1 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_6 PF12774.7 gi|336252984|ref|YP_004596091.1| - 0.075 12.0 0.0 0.15 11.0 0.0 1.4 1 0 0 1 1 1 0 Hydrolytic ATP binding site of dynein motor region AAA_24 PF13479.6 gi|336252984|ref|YP_004596091.1| - 0.081 12.6 0.0 0.16 11.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain RuvB_N PF05496.12 gi|336252984|ref|YP_004596091.1| - 0.099 12.4 0.0 0.19 11.5 0.0 1.4 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain AAA_17 PF13207.6 gi|336252984|ref|YP_004596091.1| - 0.1 13.0 0.1 0.63 10.5 0.0 2.2 2 0 0 2 2 2 0 AAA domain TsaE PF02367.17 gi|336252984|ref|YP_004596091.1| - 0.12 12.4 0.0 0.22 11.5 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Septin PF00735.18 gi|336252984|ref|YP_004596091.1| - 0.13 11.6 0.0 0.2 10.9 0.0 1.2 1 0 0 1 1 1 0 Septin SRP54 PF00448.22 gi|336252984|ref|YP_004596091.1| - 0.14 11.8 0.0 0.37 10.4 0.0 1.7 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain TrwB_AAD_bind PF10412.9 gi|336252984|ref|YP_004596091.1| - 0.18 10.7 0.0 0.28 10.0 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain KAP_NTPase PF07693.14 gi|336252984|ref|YP_004596091.1| - 0.19 11.0 0.0 2.5 7.3 0.0 2.1 1 1 1 2 2 2 0 KAP family P-loop domain DUF2267 PF10025.9 gi|336252985|ref|YP_004596092.1| - 2.3e-22 79.5 4.2 2.9e-22 79.2 4.2 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2267) DUF2267 PF10025.9 gi|336252986|ref|YP_004596093.1| - 8.4e-23 81.0 7.0 1.1e-22 80.6 7.0 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2267) PSD1 PF07587.11 gi|336252986|ref|YP_004596093.1| - 0.051 13.1 0.1 0.058 12.9 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1553) CHDCT2 PF08074.11 gi|336252986|ref|YP_004596093.1| - 0.12 12.6 0.2 1.3 9.1 0.1 2.0 1 1 1 2 2 2 0 CHDCT2 (NUC038) domain MgtE_N PF03448.17 gi|336252986|ref|YP_004596093.1| - 0.18 12.4 6.1 4.1 8.1 0.1 2.8 2 1 0 2 2 2 0 MgtE intracellular N domain TruB_C PF09142.11 gi|336252986|ref|YP_004596093.1| - 0.64 9.8 4.2 1.7 8.4 0.3 2.4 2 0 0 2 2 2 0 tRNA Pseudouridine synthase II, C terminal Halo_GVPC PF05465.13 gi|336252987|ref|YP_004596094.1| - 0.0014 18.8 1.9 0.0014 18.8 1.9 2.0 2 0 0 2 2 2 1 Halobacterial gas vesicle protein C (GVPC) repeat HBM PF16591.5 gi|336252987|ref|YP_004596094.1| - 0.0026 17.2 5.6 0.11 11.9 0.2 2.0 1 1 1 2 2 2 2 Helical bimodular sensor domain Apolipoprotein PF01442.18 gi|336252987|ref|YP_004596094.1| - 0.015 15.2 7.9 0.026 14.4 7.9 1.4 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain Cytochrom_B562 PF07361.11 gi|336252987|ref|YP_004596094.1| - 0.018 15.7 1.0 0.046 14.4 1.0 1.6 1 1 0 1 1 1 0 Cytochrome b562 DUF883 PF05957.13 gi|336252987|ref|YP_004596094.1| - 0.033 14.8 7.5 0.24 12.0 1.6 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) SCAB_CC PF16712.5 gi|336252987|ref|YP_004596094.1| - 0.042 13.7 0.5 0.095 12.5 0.0 1.7 2 0 0 2 2 2 0 Coiled-coil regions of plant-specific actin-binding protein DUF3450 PF11932.8 gi|336252987|ref|YP_004596094.1| - 0.063 12.6 2.5 0.079 12.3 2.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) PBP-Tp47_c PF14888.6 gi|336252987|ref|YP_004596094.1| - 0.069 13.1 0.1 0.077 12.9 0.1 1.2 1 0 0 1 1 1 0 Penicillin-binding protein Tp47 domain C YtxH PF12732.7 gi|336252987|ref|YP_004596094.1| - 0.097 13.2 5.7 5.9 7.5 5.7 2.1 1 1 0 1 1 1 0 YtxH-like protein DUF2564 PF10819.8 gi|336252987|ref|YP_004596094.1| - 0.24 11.8 4.6 3.9 7.9 0.1 2.5 1 1 2 3 3 3 0 Protein of unknown function (DUF2564) MT0933_antitox PF14013.6 gi|336252987|ref|YP_004596094.1| - 0.27 11.6 5.9 1 9.8 0.1 2.9 2 1 1 3 3 3 0 MT0933-like antitoxin protein CorA PF01544.18 gi|336252987|ref|YP_004596094.1| - 0.8 9.0 6.9 0.86 8.9 6.9 1.0 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein DUF4397 PF14344.6 gi|336252988|ref|YP_004596095.1| - 6.1e-42 143.2 0.5 5.3e-20 72.4 0.0 2.2 1 1 1 2 2 2 2 Domain of unknown function (DUF4397) TAT_signal PF10518.9 gi|336252988|ref|YP_004596095.1| - 0.022 14.6 3.6 0.046 13.6 3.6 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence AlgF PF11182.8 gi|336252988|ref|YP_004596095.1| - 0.049 13.4 0.0 0.29 10.9 0.0 2.0 2 0 0 2 2 2 0 Alginate O-acetyl transferase AlgF DUF4493 PF14900.6 gi|336252988|ref|YP_004596095.1| - 0.12 12.2 1.7 1.4 8.8 0.2 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4493) UvrB_inter PF17757.1 gi|336252989|ref|YP_004596096.1| - 8.8e-32 109.2 0.0 3.5e-31 107.2 0.0 2.1 1 0 0 1 1 1 1 UvrB interaction domain UvrB PF12344.8 gi|336252989|ref|YP_004596096.1| - 1.2e-18 66.6 0.1 2.9e-18 65.4 0.1 1.7 1 0 0 1 1 1 1 Ultra-violet resistance protein B Helicase_C PF00271.31 gi|336252989|ref|YP_004596096.1| - 6.1e-17 62.0 0.1 1.5e-16 60.7 0.1 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain UVR PF02151.19 gi|336252989|ref|YP_004596096.1| - 1.4e-09 37.4 6.5 1.4e-09 37.4 6.5 2.9 3 0 0 3 3 3 1 UvrB/uvrC motif ResIII PF04851.15 gi|336252989|ref|YP_004596096.1| - 7.6e-09 35.8 0.0 5.8e-08 32.9 0.0 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|336252989|ref|YP_004596096.1| - 0.001 18.9 0.1 0.009 15.8 0.0 2.6 3 1 0 3 3 3 1 DEAD/DEAH box helicase AAA_19 PF13245.6 gi|336252989|ref|YP_004596096.1| - 0.0087 16.4 0.2 6.8 7.0 0.0 2.9 3 1 0 3 3 3 2 AAA domain AAA_30 PF13604.6 gi|336252989|ref|YP_004596096.1| - 0.01 15.5 0.0 0.24 11.1 0.0 2.7 3 0 0 3 3 3 0 AAA domain UB2H PF14814.6 gi|336252989|ref|YP_004596096.1| - 0.013 15.5 0.1 0.039 14.0 0.0 1.9 2 0 0 2 2 2 0 Bifunctional transglycosylase second domain DUF87 PF01935.17 gi|336252989|ref|YP_004596096.1| - 0.032 14.3 0.1 0.032 14.3 0.1 2.9 4 0 0 4 4 4 0 Helicase HerA, central domain AAA PF00004.29 gi|336252989|ref|YP_004596096.1| - 0.3 11.5 1.0 3.2 8.2 0.0 3.2 5 0 0 5 5 5 0 ATPase family associated with various cellular activities (AAA) Cofilin_ADF PF00241.20 gi|336252989|ref|YP_004596096.1| - 0.4 10.5 2.2 0.49 10.2 0.2 2.2 2 0 0 2 2 2 0 Cofilin/tropomyosin-type actin-binding protein EF-hand_5 PF13202.6 gi|336252990|ref|YP_004596097.1| - 0.013 15.0 0.3 0.038 13.5 0.3 1.9 1 0 0 1 1 1 0 EF hand PapC_N PF13954.6 gi|336252990|ref|YP_004596097.1| - 0.019 15.0 0.1 0.039 14.0 0.0 1.6 2 0 0 2 2 2 0 PapC N-terminal domain ArsP_2 PF11449.8 gi|336252991|ref|YP_004596098.1| - 2.2e-134 448.2 14.2 2.5e-134 448.0 14.2 1.0 1 0 0 1 1 1 1 Putative, 10TM heavy-metal exporter CCB1 PF12046.8 gi|336252991|ref|YP_004596098.1| - 3.3 7.0 6.5 0.26 10.6 1.2 1.9 2 0 0 2 2 2 0 Cofactor assembly of complex C subunit B Acetyltransf_10 PF13673.7 gi|336252992|ref|YP_004596099.1| - 9e-16 58.0 0.0 1.1e-15 57.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|336252992|ref|YP_004596099.1| - 3.3e-14 53.1 0.0 3.9e-14 52.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|336252992|ref|YP_004596099.1| - 2.2e-13 50.4 0.0 3.3e-13 49.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|336252992|ref|YP_004596099.1| - 2.6e-07 31.4 0.1 3.1e-07 31.1 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|336252992|ref|YP_004596099.1| - 2.2e-06 27.5 0.0 3.3e-06 27.0 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.7 gi|336252992|ref|YP_004596099.1| - 7.2e-06 26.2 0.0 9.4e-06 25.8 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|336252992|ref|YP_004596099.1| - 9.8e-05 22.4 0.1 0.0049 17.0 0.1 2.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|336252992|ref|YP_004596099.1| - 0.00083 19.5 0.5 0.0012 19.1 0.5 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF2156 PF09924.9 gi|336252992|ref|YP_004596099.1| - 0.044 12.8 0.1 0.055 12.5 0.1 1.3 1 1 0 1 1 1 0 Uncharacterised conserved protein (DUF2156) SUI1 PF01253.22 gi|336252993|ref|YP_004596100.1| - 1.2e-17 64.2 0.0 1.8e-17 63.6 0.0 1.3 1 0 0 1 1 1 1 Translation initiation factor SUI1 Img2 PF05046.14 gi|336252993|ref|YP_004596100.1| - 0.00093 19.5 0.0 0.0015 18.8 0.0 1.5 1 1 0 1 1 1 1 Mitochondrial large subunit ribosomal protein (Img2) HEM4 PF02602.15 gi|336252993|ref|YP_004596100.1| - 0.18 11.1 0.0 0.33 10.3 0.0 1.4 1 1 0 1 1 1 0 Uroporphyrinogen-III synthase HemD DUF192 PF02643.15 gi|336252994|ref|YP_004596101.1| - 3.7e-25 87.9 0.0 4.8e-25 87.5 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 GOLD_2 PF13897.6 gi|336252994|ref|YP_004596101.1| - 0.56 10.7 7.3 9.4 6.7 0.0 2.7 2 1 1 3 3 3 0 Golgi-dynamics membrane-trafficking BUD22 PF09073.10 gi|336252994|ref|YP_004596101.1| - 2.5 7.3 9.3 2.6 7.3 9.3 1.1 1 0 0 1 1 1 0 BUD22 Nop14 PF04147.12 gi|336252994|ref|YP_004596101.1| - 3.2 5.8 11.7 3.8 5.6 11.7 1.0 1 0 0 1 1 1 0 Nop14-like family UvrC_HhH_N PF08459.11 gi|336252995|ref|YP_004596102.1| - 1.2e-41 142.2 0.0 2.5e-41 141.2 0.0 1.5 1 0 0 1 1 1 1 UvrC Helix-hairpin-helix N-terminal HHH_5 PF14520.6 gi|336252995|ref|YP_004596102.1| - 8.6e-13 48.7 0.1 2.7e-12 47.1 0.1 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH PF00633.23 gi|336252995|ref|YP_004596102.1| - 9.2e-12 44.2 0.2 8.4e-09 34.9 0.1 2.7 2 0 0 2 2 2 2 Helix-hairpin-helix motif HHH_2 PF12826.7 gi|336252995|ref|YP_004596102.1| - 1e-09 38.3 0.0 3.2e-09 36.8 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif UVR PF02151.19 gi|336252995|ref|YP_004596102.1| - 2.2e-09 36.7 2.3 5.4e-09 35.5 2.3 1.7 1 0 0 1 1 1 1 UvrB/uvrC motif GIY-YIG PF01541.24 gi|336252995|ref|YP_004596102.1| - 5.7e-09 36.1 0.0 1.1e-08 35.3 0.0 1.5 1 0 0 1 1 1 1 GIY-YIG catalytic domain 5_3_exonuc PF01367.20 gi|336252995|ref|YP_004596102.1| - 0.0012 19.4 0.1 0.65 10.6 0.0 3.0 2 1 1 3 3 3 1 5'-3' exonuclease, C-terminal SAM fold HHH_3 PF12836.7 gi|336252995|ref|YP_004596102.1| - 0.0023 18.2 0.0 0.019 15.2 0.0 2.4 2 0 0 2 2 2 1 Helix-hairpin-helix motif FbpA PF05833.11 gi|336252995|ref|YP_004596102.1| - 0.013 14.2 0.0 0.021 13.6 0.0 1.3 1 0 0 1 1 1 0 Fibronectin-binding protein A N-terminus (FbpA) IMS_HHH PF11798.8 gi|336252995|ref|YP_004596102.1| - 0.041 14.2 0.1 0.4 11.1 0.0 2.4 2 0 0 2 2 2 0 IMS family HHH motif HHH_8 PF14716.6 gi|336252995|ref|YP_004596102.1| - 0.06 13.7 0.0 0.49 10.8 0.0 2.4 2 0 0 2 2 2 0 Helix-hairpin-helix domain ABC_tran PF00005.27 gi|336252998|ref|YP_004596105.1| - 9.2e-29 100.7 0.0 1.6e-28 99.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|336252998|ref|YP_004596105.1| - 6.2e-10 39.4 0.1 8.7e-06 25.8 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|336252998|ref|YP_004596105.1| - 2.1e-09 37.9 0.0 7.1e-09 36.3 0.0 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF4162) AAA_30 PF13604.6 gi|336252998|ref|YP_004596105.1| - 6.5e-06 26.0 0.0 1.1e-05 25.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain MeaB PF03308.16 gi|336252998|ref|YP_004596105.1| - 0.0021 17.1 0.0 0.0044 16.1 0.0 1.4 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB SMC_N PF02463.19 gi|336252998|ref|YP_004596105.1| - 0.003 17.0 0.0 0.84 9.0 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|336252998|ref|YP_004596105.1| - 0.0046 17.5 0.1 0.0082 16.7 0.1 1.3 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|336252998|ref|YP_004596105.1| - 0.0095 15.8 0.0 0.016 15.2 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_29 PF13555.6 gi|336252998|ref|YP_004596105.1| - 0.026 14.3 0.0 0.052 13.3 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|336252998|ref|YP_004596105.1| - 0.047 14.1 0.1 0.086 13.2 0.0 1.5 2 0 0 2 2 2 0 AAA ATPase domain AAA_27 PF13514.6 gi|336252998|ref|YP_004596105.1| - 0.066 12.8 0.0 0.18 11.4 0.0 1.7 1 0 0 1 1 1 0 AAA domain ABC2_membrane_2 PF12679.7 gi|336252999|ref|YP_004596106.1| - 9.6e-57 192.5 16.3 1.2e-56 192.2 16.3 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|336252999|ref|YP_004596106.1| - 4.1e-08 32.7 18.1 4.1e-08 32.7 18.1 2.1 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|336252999|ref|YP_004596106.1| - 3.5e-07 30.4 12.3 3.5e-07 30.4 12.3 1.9 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|336252999|ref|YP_004596106.1| - 1.2e-06 28.2 14.1 1.2e-06 28.2 14.1 2.4 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|336252999|ref|YP_004596106.1| - 0.00039 19.9 14.8 0.00039 19.9 14.8 1.6 2 0 0 2 2 2 1 ABC-2 type transporter Thymidylate_kin PF02223.17 gi|336252999|ref|YP_004596106.1| - 0.14 11.8 0.0 0.21 11.2 0.0 1.2 1 0 0 1 1 1 0 Thymidylate kinase DNA_ligase_aden PF01653.18 gi|336253000|ref|YP_004596107.1| - 2.6e-107 358.6 0.0 4e-107 358.0 0.0 1.3 1 0 0 1 1 1 1 NAD-dependent DNA ligase adenylation domain DNA_ligase_OB PF03120.16 gi|336253000|ref|YP_004596107.1| - 3.9e-30 103.6 2.9 3.9e-30 103.6 2.9 2.1 2 0 0 2 2 2 1 NAD-dependent DNA ligase OB-fold domain HHH_2 PF12826.7 gi|336253000|ref|YP_004596107.1| - 2.6e-20 72.3 0.5 2.7e-19 69.0 0.1 2.5 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|336253000|ref|YP_004596107.1| - 3.1e-16 59.7 0.0 3e-07 31.0 0.1 2.6 2 0 0 2 2 2 2 Helix-hairpin-helix domain BRCT PF00533.26 gi|336253000|ref|YP_004596107.1| - 4.2e-13 49.5 0.0 7.8e-13 48.6 0.0 1.5 1 0 0 1 1 1 1 BRCA1 C Terminus (BRCT) domain DNA_ligase_ZBD PF03119.16 gi|336253000|ref|YP_004596107.1| - 1.7e-05 24.7 1.8 1.7e-05 24.7 1.8 3.0 3 0 0 3 3 3 1 NAD-dependent DNA ligase C4 zinc finger domain HHH PF00633.23 gi|336253000|ref|YP_004596107.1| - 0.00042 20.0 0.3 2.7 8.0 0.0 4.4 4 0 0 4 4 4 1 Helix-hairpin-helix motif 5_3_exonuc PF01367.20 gi|336253000|ref|YP_004596107.1| - 0.011 16.3 0.0 0.082 13.5 0.0 2.4 2 1 0 2 2 2 0 5'-3' exonuclease, C-terminal SAM fold HHH_8 PF14716.6 gi|336253000|ref|YP_004596107.1| - 0.014 15.7 0.0 13 6.2 0.0 3.6 2 1 0 2 2 2 0 Helix-hairpin-helix domain E1-E2_ATPase PF00122.20 gi|336253000|ref|YP_004596107.1| - 0.069 12.7 0.1 0.13 11.8 0.1 1.3 1 0 0 1 1 1 0 E1-E2 ATPase YebG PF07130.12 gi|336253000|ref|YP_004596107.1| - 0.17 11.8 0.7 4 7.3 0.3 2.9 3 0 0 3 3 3 0 YebG protein Fer2 PF00111.27 gi|336253001|ref|YP_004596108.1| - 3e-11 43.1 0.5 1.7e-10 40.7 0.5 1.9 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain SBP56 PF05694.11 gi|336253002|ref|YP_004596109.1| - 1.3e-197 657.2 0.1 1.5e-197 657.0 0.1 1.0 1 0 0 1 1 1 1 56kDa selenium binding protein (SBP56) Lactonase PF10282.9 gi|336253002|ref|YP_004596109.1| - 0.036 13.3 0.0 0.19 11.0 0.0 2.0 2 1 0 2 2 2 0 Lactonase, 7-bladed beta-propeller Fer2 PF00111.27 gi|336253003|ref|YP_004596110.1| - 3.5e-12 46.1 1.1 3e-11 43.1 1.1 2.1 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.6 gi|336253003|ref|YP_004596110.1| - 0.016 15.2 0.1 0.037 14.1 0.1 1.6 1 1 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Na_H_antiporter PF03553.14 gi|336253004|ref|YP_004596111.1| - 1.3e-59 201.9 37.3 1.6e-52 178.6 19.4 2.1 1 1 1 2 2 2 2 Na+/H+ antiporter family Gate PF07670.14 gi|336253004|ref|YP_004596111.1| - 0.062 13.6 10.7 0.16 12.3 1.0 3.3 2 1 0 2 2 2 0 Nucleoside recognition RIO1 PF01163.22 gi|336253005|ref|YP_004596112.1| - 4.8e-60 202.4 0.1 2.6e-59 200.0 0.0 1.8 2 0 0 2 2 2 1 RIO1 family APH PF01636.23 gi|336253005|ref|YP_004596112.1| - 8.4e-11 42.2 0.3 6.1e-05 23.1 0.0 2.7 1 1 1 2 2 2 2 Phosphotransferase enzyme family Pkinase PF00069.25 gi|336253005|ref|YP_004596112.1| - 3.4e-05 23.3 0.0 0.00021 20.7 0.0 1.9 2 0 0 2 2 2 1 Protein kinase domain Kdo PF06293.14 gi|336253005|ref|YP_004596112.1| - 0.00029 20.2 0.2 0.0041 16.5 0.0 2.4 2 1 0 2 2 2 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase_fungal PF17667.1 gi|336253005|ref|YP_004596112.1| - 0.008 15.0 0.0 0.013 14.3 0.0 1.2 1 0 0 1 1 1 1 Fungal protein kinase VQ PF05678.14 gi|336253005|ref|YP_004596112.1| - 0.05 13.1 0.1 0.091 12.3 0.1 1.5 1 0 0 1 1 1 0 VQ motif 5_nucleotid_C PF02872.18 gi|336253006|ref|YP_004596113.1| - 6.8e-47 159.6 0.0 1.2e-46 158.9 0.0 1.4 1 0 0 1 1 1 1 5'-nucleotidase, C-terminal domain CoA_binding_2 PF13380.6 gi|336253006|ref|YP_004596113.1| - 0.057 13.9 1.2 0.11 13.1 0.4 1.8 2 0 0 2 2 2 0 CoA binding domain tRNA-synt_1b PF00579.25 gi|336253007|ref|YP_004596114.1| - 7.9e-22 77.9 0.0 3e-21 76.0 0.0 1.8 1 1 0 1 1 1 1 tRNA synthetases class I (W and Y) Metallophos_2 PF12850.7 gi|336253008|ref|YP_004596115.1| - 3.3e-31 108.7 0.5 3.8e-31 108.5 0.5 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|336253008|ref|YP_004596115.1| - 0.00016 22.2 4.1 0.00048 20.7 4.1 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase KH_1 PF00013.29 gi|336253009|ref|YP_004596116.1| - 9e-14 51.1 0.7 1.8e-07 30.8 0.1 2.3 2 0 0 2 2 2 2 KH domain KH_2 PF07650.17 gi|336253009|ref|YP_004596116.1| - 3.2e-05 23.7 2.2 0.0046 16.8 0.1 2.5 2 1 0 2 2 2 2 KH domain KH_8 PF17903.1 gi|336253009|ref|YP_004596116.1| - 0.00014 21.9 0.0 0.00022 21.3 0.0 1.3 1 0 0 1 1 1 1 Krr1 KH1 domain KH_4 PF13083.6 gi|336253009|ref|YP_004596116.1| - 0.0081 16.0 3.0 1.8 8.5 0.3 3.1 2 1 1 3 3 3 2 KH domain Cpn60_TCP1 PF00118.24 gi|336253010|ref|YP_004596117.1| - 1e-175 585.1 15.0 1.2e-175 584.9 15.0 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family P-II PF00543.22 gi|336253010|ref|YP_004596117.1| - 0.37 11.4 3.7 8.6 7.0 0.0 3.6 3 0 0 3 3 3 0 Nitrogen regulatory protein P-II OCD_Mu_crystall PF02423.15 gi|336253011|ref|YP_004596118.1| - 3.6e-93 312.0 1.4 4.1e-93 311.8 1.4 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.20 gi|336253011|ref|YP_004596118.1| - 0.038 14.0 0.0 0.072 13.1 0.0 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase GFO_IDH_MocA PF01408.22 gi|336253011|ref|YP_004596118.1| - 0.053 14.3 0.2 0.13 13.1 0.1 1.8 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold TrkA_N PF02254.18 gi|336253011|ref|YP_004596118.1| - 0.068 13.4 1.4 2.1 8.6 0.1 2.6 2 0 0 2 2 2 0 TrkA-N domain Sugar_tr PF00083.24 gi|336253012|ref|YP_004596119.1| - 5.3e-131 437.6 19.4 6.1e-131 437.4 19.4 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|336253012|ref|YP_004596119.1| - 5.6e-45 153.8 70.5 8.8e-36 123.5 39.8 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily TRI12 PF06609.13 gi|336253012|ref|YP_004596119.1| - 1.1e-07 30.7 3.4 1.1e-07 30.7 3.4 2.1 1 1 1 2 2 2 2 Fungal trichothecene efflux pump (TRI12) OATP PF03137.20 gi|336253012|ref|YP_004596119.1| - 0.00065 18.1 7.4 0.011 14.1 0.5 3.0 1 1 1 2 2 2 2 Organic Anion Transporter Polypeptide (OATP) family MFS_2 PF13347.6 gi|336253012|ref|YP_004596119.1| - 0.00073 18.2 37.0 0.00084 18.0 4.8 4.1 3 1 1 4 4 4 2 MFS/sugar transport protein MFS_1_like PF12832.7 gi|336253012|ref|YP_004596119.1| - 0.34 9.7 13.5 0.072 11.9 0.3 2.9 1 1 1 2 2 2 0 MFS_1 like family Gly-zipper_Omp PF13488.6 gi|336253012|ref|YP_004596119.1| - 0.89 9.6 11.6 0.032 14.2 4.2 2.6 2 0 0 2 2 2 0 Glycine zipper Gly-zipper_YMGG PF13441.6 gi|336253012|ref|YP_004596119.1| - 4.7 7.0 9.7 0.28 11.0 3.2 2.4 2 0 0 2 2 2 0 YMGG-like Gly-zipper DUF2071 PF09844.9 gi|336253013|ref|YP_004596120.1| - 1.4e-67 227.4 0.1 1.6e-67 227.2 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (COG2071) ADC PF06314.11 gi|336253013|ref|YP_004596120.1| - 1.2e-05 25.0 0.1 3.8e-05 23.4 0.1 1.9 1 1 0 1 1 1 1 Acetoacetate decarboxylase (ADC) TFIIB PF00382.19 gi|336253014|ref|YP_004596121.1| - 1.8e-23 82.4 1.6 4.6e-14 52.2 0.4 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|336253014|ref|YP_004596121.1| - 1.9e-10 40.1 4.6 3e-10 39.4 4.6 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding DZR PF12773.7 gi|336253014|ref|YP_004596121.1| - 0.013 15.5 1.1 0.028 14.5 1.1 1.4 1 0 0 1 1 1 0 Double zinc ribbon RB_B PF01857.20 gi|336253014|ref|YP_004596121.1| - 0.026 14.6 0.0 0.041 13.9 0.0 1.2 1 0 0 1 1 1 0 Retinoblastoma-associated protein B domain OrfB_Zn_ribbon PF07282.11 gi|336253014|ref|YP_004596121.1| - 0.11 12.5 1.5 0.27 11.2 1.5 1.6 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.10 gi|336253014|ref|YP_004596121.1| - 0.27 11.4 3.3 3.4 7.9 0.2 2.6 1 1 1 2 2 2 0 Zinc ribbon domain HNH PF01844.23 gi|336253014|ref|YP_004596121.1| - 0.88 9.8 4.0 0.36 11.0 0.6 2.0 1 1 0 2 2 2 0 HNH endonuclease MCM PF00493.23 gi|336253015|ref|YP_004596122.1| - 1.7e-92 308.6 0.0 2.8e-92 307.9 0.0 1.3 1 0 0 1 1 1 1 MCM P-loop domain MCM_OB PF17207.3 gi|336253015|ref|YP_004596122.1| - 6.6e-37 126.2 0.2 1.1e-36 125.4 0.2 1.4 1 0 0 1 1 1 1 MCM OB domain MCM_lid PF17855.1 gi|336253015|ref|YP_004596122.1| - 1.1e-28 99.5 0.4 2.4e-28 98.4 0.4 1.6 1 0 0 1 1 1 1 MCM AAA-lid domain Mg_chelatase PF01078.21 gi|336253015|ref|YP_004596122.1| - 9.1e-10 38.3 0.0 1e-05 25.1 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI MCM_N PF14551.6 gi|336253015|ref|YP_004596122.1| - 3.6e-09 37.1 0.9 3.6e-09 37.1 0.9 2.8 2 1 0 2 2 2 1 MCM N-terminal domain AAA_5 PF07728.14 gi|336253015|ref|YP_004596122.1| - 3.9e-06 26.9 0.0 1.1e-05 25.5 0.0 1.8 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|336253015|ref|YP_004596122.1| - 0.00055 20.4 1.4 0.0019 18.6 0.1 2.4 2 1 0 2 2 2 1 AAA ATPase domain Sigma54_activat PF00158.26 gi|336253015|ref|YP_004596122.1| - 0.001 18.8 0.1 0.02 14.6 0.1 2.3 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA PF00004.29 gi|336253015|ref|YP_004596122.1| - 0.031 14.7 0.1 0.16 12.4 0.0 2.4 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_3 PF07726.11 gi|336253015|ref|YP_004596122.1| - 0.035 14.0 0.0 0.14 12.0 0.0 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|336253015|ref|YP_004596122.1| - 0.038 13.7 0.2 0.094 12.4 0.2 1.6 1 0 0 1 1 1 0 AAA domain DUF5631 PF18645.1 gi|336253015|ref|YP_004596122.1| - 0.062 13.7 0.2 1.3 9.4 0.0 2.6 2 0 0 2 2 2 0 Family of unknown function (DUF5631) SurA_N_2 PF13623.6 gi|336253015|ref|YP_004596122.1| - 2.3 8.1 4.7 8.7 6.2 0.3 3.4 4 0 0 4 4 4 0 SurA N-terminal domain DUF502 PF04367.13 gi|336253016|ref|YP_004596123.1| - 6.7e-25 87.0 0.8 8.9e-25 86.6 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF502) FtsX PF02687.21 gi|336253016|ref|YP_004596123.1| - 0.0075 16.7 1.7 0.013 16.0 1.7 1.2 1 0 0 1 1 1 1 FtsX-like permease family zf-CSL PF05207.13 gi|336253017|ref|YP_004596124.1| - 0.0073 16.0 0.3 0.31 10.8 0.1 2.2 2 0 0 2 2 2 2 CSL zinc finger Aldo_ket_red PF00248.21 gi|336253018|ref|YP_004596125.1| - 4.2e-59 200.2 0.0 3.7e-47 160.9 0.0 2.0 1 1 1 2 2 2 2 Aldo/keto reductase family HTH_Tnp_1 PF01527.20 gi|336253018|ref|YP_004596125.1| - 0.01 16.2 0.1 2.6 8.4 0.0 3.2 3 0 0 3 3 3 0 Transposase IP_trans PF02121.18 gi|336253018|ref|YP_004596125.1| - 0.15 11.6 0.0 0.23 11.0 0.0 1.2 1 0 0 1 1 1 0 Phosphatidylinositol transfer protein BofA PF07441.11 gi|336253019|ref|YP_004596126.1| - 4.8e-08 33.1 18.6 6.5e-08 32.7 18.6 1.2 1 0 0 1 1 1 1 SigmaK-factor processing regulatory protein BofA GTA_holin_3TM PF11351.8 gi|336253019|ref|YP_004596126.1| - 0.71 10.4 3.8 0.94 10.0 3.8 1.2 1 0 0 1 1 1 0 Holin of 3TMs, for gene-transfer release 7TMR-DISM_7TM PF07695.11 gi|336253020|ref|YP_004596127.1| - 0.004 17.1 0.6 0.0045 16.9 0.6 1.0 1 0 0 1 1 1 1 7TM diverse intracellular signalling MBOAT PF03062.19 gi|336253020|ref|YP_004596127.1| - 0.0071 15.7 1.3 0.0089 15.4 1.3 1.0 1 0 0 1 1 1 1 MBOAT, membrane-bound O-acyltransferase family DUF4131 PF13567.6 gi|336253020|ref|YP_004596127.1| - 0.014 15.1 0.1 0.014 15.1 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) Herpes_LMP1 PF05297.11 gi|336253020|ref|YP_004596127.1| - 0.028 13.6 0.2 0.032 13.5 0.2 1.1 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) DUF4175 PF13779.6 gi|336253020|ref|YP_004596127.1| - 0.045 11.7 0.9 0.047 11.6 0.9 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4175) Conotoxin PF02950.17 gi|336253020|ref|YP_004596127.1| - 0.21 12.6 0.6 2.3 9.3 0.0 2.1 2 0 0 2 2 2 0 Conotoxin DUF2721 PF11026.8 gi|336253020|ref|YP_004596127.1| - 0.5 10.3 6.0 0.64 9.9 6.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2721) DUF2299 PF10061.9 gi|336253021|ref|YP_004596128.1| - 0.054 13.2 0.0 0.086 12.6 0.0 1.3 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2299) LRV PF01816.17 gi|336253021|ref|YP_004596128.1| - 0.27 11.7 2.2 18 6.0 0.2 2.5 2 0 0 2 2 2 0 Leucine rich repeat variant DEAD PF00270.29 gi|336253022|ref|YP_004596129.1| - 9.6e-22 77.6 0.0 2e-21 76.6 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|336253022|ref|YP_004596129.1| - 3.8e-15 56.2 0.0 9.2e-15 54.9 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|336253022|ref|YP_004596129.1| - 3.1e-10 40.3 0.0 5.6e-10 39.5 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit MCPsignal PF00015.21 gi|336253023|ref|YP_004596130.1| - 1.5e-29 103.0 26.8 1.5e-29 103.0 26.8 4.9 1 1 4 5 5 5 3 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 gi|336253023|ref|YP_004596130.1| - 4.2e-09 36.6 1.7 4.2e-09 36.6 1.7 5.2 5 1 0 5 5 5 2 HAMP domain dCache_1 PF02743.18 gi|336253023|ref|YP_004596130.1| - 1.9e-07 31.1 0.4 1.9e-07 31.1 0.4 4.1 3 2 1 4 4 4 1 Cache domain Spc7 PF08317.11 gi|336253023|ref|YP_004596130.1| - 0.016 14.1 29.8 0.0068 15.3 5.5 3.6 2 1 1 3 3 3 0 Spc7 kinetochore protein DUF1664 PF07889.12 gi|336253023|ref|YP_004596130.1| - 0.031 14.3 22.7 0.29 11.2 0.5 5.4 3 2 2 5 5 5 0 Protein of unknown function (DUF1664) DUF948 PF06103.11 gi|336253023|ref|YP_004596130.1| - 0.081 13.2 31.4 1.3 9.3 0.4 6.7 3 1 2 6 6 6 0 Bacterial protein of unknown function (DUF948) Laminin_II PF06009.12 gi|336253023|ref|YP_004596130.1| - 0.16 12.0 33.8 0.12 12.4 2.4 5.4 3 2 2 5 5 5 0 Laminin Domain II AAA_13 PF13166.6 gi|336253023|ref|YP_004596130.1| - 0.18 10.4 30.9 0.01 14.5 7.9 2.3 1 1 1 2 2 2 0 AAA domain Fzo_mitofusin PF04799.13 gi|336253023|ref|YP_004596130.1| - 0.63 9.6 21.0 0.12 11.9 2.3 4.3 4 1 1 5 5 5 0 fzo-like conserved region DUF2203 PF09969.9 gi|336253023|ref|YP_004596130.1| - 0.98 10.2 31.6 0.081 13.6 0.8 5.2 2 1 3 5 5 5 0 Uncharacterized conserved protein (DUF2203) Fib_alpha PF08702.10 gi|336253023|ref|YP_004596130.1| - 6.1 7.0 14.4 15 5.7 0.2 4.0 3 2 2 5 5 5 0 Fibrinogen alpha/beta chain family CorA PF01544.18 gi|336253023|ref|YP_004596130.1| - 6.5 6.0 29.7 0.89 8.8 5.9 3.9 2 1 1 4 4 4 0 CorA-like Mg2+ transporter protein Syntaxin_2 PF14523.6 gi|336253023|ref|YP_004596130.1| - 8.8 6.8 6.5 8.5 6.8 0.3 3.8 4 2 0 4 4 3 0 Syntaxin-like protein Peripla_BP_2 PF01497.18 gi|336253024|ref|YP_004596131.1| - 5.5e-22 78.5 0.2 7.3e-22 78.1 0.2 1.3 1 0 0 1 1 1 1 Periplasmic binding protein TAT_signal PF10518.9 gi|336253024|ref|YP_004596131.1| - 0.078 12.9 1.9 0.12 12.3 1.9 1.3 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence TP6A_N PF04406.14 gi|336253024|ref|YP_004596131.1| - 0.2 11.7 0.0 0.52 10.3 0.0 1.6 1 0 0 1 1 1 0 Type IIB DNA topoisomerase ABC_tran PF00005.27 gi|336253025|ref|YP_004596132.1| - 8.5e-31 107.3 0.0 1.2e-30 106.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|336253025|ref|YP_004596132.1| - 1.5e-13 51.2 0.9 1.2e-05 25.3 0.2 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|336253025|ref|YP_004596132.1| - 1.4e-11 44.3 0.2 4.4e-09 36.1 0.2 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|336253025|ref|YP_004596132.1| - 3.6e-06 26.6 0.0 8.9e-06 25.4 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_ATPase PF09818.9 gi|336253025|ref|YP_004596132.1| - 8.5e-06 24.8 0.1 0.02 13.7 0.0 2.9 2 1 0 2 2 2 2 Predicted ATPase of the ABC class AAA_16 PF13191.6 gi|336253025|ref|YP_004596132.1| - 1.2e-05 25.8 0.1 2.4e-05 24.8 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|336253025|ref|YP_004596132.1| - 1.2e-05 25.6 0.0 3.8e-05 24.0 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|336253025|ref|YP_004596132.1| - 5.7e-05 23.0 0.0 0.00031 20.6 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.6 gi|336253025|ref|YP_004596132.1| - 0.00027 21.5 0.0 0.00037 21.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain ATP_bind_1 PF03029.17 gi|336253025|ref|YP_004596132.1| - 0.00057 19.8 0.1 0.032 14.0 0.0 2.2 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein AAA_33 PF13671.6 gi|336253025|ref|YP_004596132.1| - 0.001 19.3 0.0 0.0024 18.0 0.0 1.7 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|336253025|ref|YP_004596132.1| - 0.0012 18.2 0.0 0.002 17.4 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_25 PF13481.6 gi|336253025|ref|YP_004596132.1| - 0.0015 18.2 0.6 0.02 14.5 0.6 2.5 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|336253025|ref|YP_004596132.1| - 0.0019 17.9 0.1 0.0049 16.6 0.1 1.9 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|336253025|ref|YP_004596132.1| - 0.0022 17.9 0.0 0.0045 16.9 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_18 PF13238.6 gi|336253025|ref|YP_004596132.1| - 0.0025 18.4 0.0 0.0079 16.7 0.0 1.9 2 1 0 2 2 1 1 AAA domain HD PF01966.22 gi|336253025|ref|YP_004596132.1| - 0.0042 17.3 0.0 0.01 16.1 0.0 1.6 1 0 0 1 1 1 1 HD domain Mg_chelatase PF01078.21 gi|336253025|ref|YP_004596132.1| - 0.0055 16.1 0.1 3.2 7.1 0.0 2.2 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Rad17 PF03215.15 gi|336253025|ref|YP_004596132.1| - 0.0072 16.3 0.1 0.017 15.1 0.0 1.6 2 0 0 2 2 1 1 Rad17 P-loop domain MukB PF04310.12 gi|336253025|ref|YP_004596132.1| - 0.0085 15.9 0.0 0.016 15.0 0.0 1.3 1 0 0 1 1 1 1 MukB N-terminal AAA PF00004.29 gi|336253025|ref|YP_004596132.1| - 0.02 15.3 0.0 0.05 14.0 0.0 1.6 2 0 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.6 gi|336253025|ref|YP_004596132.1| - 0.022 14.8 0.0 0.053 13.5 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_27 PF13514.6 gi|336253025|ref|YP_004596132.1| - 0.028 14.0 0.0 0.047 13.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain AviRa PF11599.8 gi|336253025|ref|YP_004596132.1| - 0.028 13.9 0.0 0.052 13.0 0.0 1.4 1 0 0 1 1 1 0 RRNA methyltransferase AviRa DUF2813 PF11398.8 gi|336253025|ref|YP_004596132.1| - 0.055 12.7 0.0 0.08 12.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2813) AAA_28 PF13521.6 gi|336253025|ref|YP_004596132.1| - 0.055 13.7 0.0 0.13 12.5 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|336253025|ref|YP_004596132.1| - 0.083 12.9 0.0 0.2 11.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) RNA_helicase PF00910.22 gi|336253025|ref|YP_004596132.1| - 0.093 13.1 0.0 0.16 12.3 0.0 1.4 1 0 0 1 1 1 0 RNA helicase AAA_7 PF12775.7 gi|336253025|ref|YP_004596132.1| - 0.1 12.1 0.0 0.17 11.4 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region MMR_HSR1 PF01926.23 gi|336253025|ref|YP_004596132.1| - 0.1 12.7 0.0 0.68 10.0 0.0 2.1 2 0 0 2 2 2 0 50S ribosome-binding GTPase APS_kinase PF01583.20 gi|336253025|ref|YP_004596132.1| - 0.17 11.7 0.0 0.3 11.0 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase DUF815 PF05673.13 gi|336253025|ref|YP_004596132.1| - 0.18 11.0 0.0 0.32 10.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) FecCD PF01032.18 gi|336253026|ref|YP_004596133.1| - 3e-84 282.7 37.9 3.8e-84 282.3 37.9 1.1 1 0 0 1 1 1 1 FecCD transport family Cupin_2 PF07883.11 gi|336253027|ref|YP_004596134.1| - 4.4e-18 64.8 0.3 6.4e-18 64.2 0.3 1.3 1 0 0 1 1 1 1 Cupin domain Cupin_1 PF00190.22 gi|336253027|ref|YP_004596134.1| - 6.6e-10 38.8 0.0 9.3e-10 38.3 0.0 1.2 1 0 0 1 1 1 1 Cupin AraC_binding PF02311.19 gi|336253027|ref|YP_004596134.1| - 4.5e-06 26.6 0.0 6.1e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain MannoseP_isomer PF01050.18 gi|336253027|ref|YP_004596134.1| - 0.00017 21.5 0.0 0.00023 21.1 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase CENP-C_C PF11699.8 gi|336253027|ref|YP_004596134.1| - 0.0026 17.9 0.0 0.0035 17.5 0.0 1.1 1 0 0 1 1 1 1 Mif2/CENP-C like Cupin_3 PF05899.12 gi|336253027|ref|YP_004596134.1| - 0.012 15.3 0.1 0.019 14.7 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF861) ARD PF03079.14 gi|336253027|ref|YP_004596134.1| - 0.024 14.8 0.0 0.034 14.3 0.0 1.2 1 0 0 1 1 1 0 ARD/ARD' family CSD PF00313.22 gi|336253028|ref|YP_004596135.1| - 2.2e-20 72.3 0.1 2.4e-20 72.1 0.1 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain OB_RNB PF08206.11 gi|336253028|ref|YP_004596135.1| - 0.039 13.6 2.2 0.049 13.3 2.2 1.2 1 0 0 1 1 1 0 Ribonuclease B OB domain S1-like PF14444.6 gi|336253028|ref|YP_004596135.1| - 0.14 12.1 0.2 0.18 11.7 0.2 1.4 1 1 0 1 1 1 0 S1-like HTH_24 PF13412.6 gi|336253029|ref|YP_004596136.1| - 1.1e-14 53.7 0.4 1.8e-14 53.0 0.4 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|336253029|ref|YP_004596136.1| - 2.2e-10 40.2 1.6 3.7e-10 39.5 1.6 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|336253029|ref|YP_004596136.1| - 1.1e-08 34.9 0.1 2.5e-08 33.7 0.1 1.6 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.7 gi|336253029|ref|YP_004596136.1| - 2.5e-06 27.3 0.1 9.1e-06 25.5 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.10 gi|336253029|ref|YP_004596136.1| - 8.3e-06 25.5 0.0 1.5e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain Fe_dep_repress PF01325.19 gi|336253029|ref|YP_004596136.1| - 1.1e-05 25.6 0.1 5.8e-05 23.2 0.1 2.0 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.20 gi|336253029|ref|YP_004596136.1| - 2.1e-05 24.3 0.0 4.4e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|336253029|ref|YP_004596136.1| - 4.4e-05 23.5 0.1 9.9e-05 22.3 0.0 1.6 2 0 0 2 2 1 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|336253029|ref|YP_004596136.1| - 0.00022 20.8 0.2 0.00042 19.9 0.2 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 Rrf2 PF02082.20 gi|336253029|ref|YP_004596136.1| - 0.00023 21.5 0.0 0.00045 20.5 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator HTH_DeoR PF08220.12 gi|336253029|ref|YP_004596136.1| - 0.00065 19.4 0.1 0.0048 16.6 0.1 2.1 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_Mga PF08280.11 gi|336253029|ref|YP_004596136.1| - 0.0022 18.0 0.0 0.0041 17.1 0.0 1.4 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_12 PF08461.10 gi|336253029|ref|YP_004596136.1| - 0.0029 17.5 0.5 0.018 15.0 0.3 2.4 2 1 0 2 2 2 1 Ribonuclease R winged-helix domain HTH_Crp_2 PF13545.6 gi|336253029|ref|YP_004596136.1| - 0.0032 17.4 0.1 0.0068 16.4 0.1 1.5 2 0 0 2 2 1 1 Crp-like helix-turn-helix domain GntR PF00392.21 gi|336253029|ref|YP_004596136.1| - 0.0034 17.0 0.1 0.0056 16.3 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_28 PF13518.6 gi|336253029|ref|YP_004596136.1| - 0.0042 17.2 0.1 0.0075 16.4 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HrcA_DNA-bdg PF03444.15 gi|336253029|ref|YP_004596136.1| - 0.0055 16.3 0.0 0.0091 15.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Put_DNA-bind_N PF06971.13 gi|336253029|ref|YP_004596136.1| - 0.0057 16.7 0.2 0.013 15.5 0.2 1.5 1 0 0 1 1 1 1 Putative DNA-binding protein N-terminus DUF2250 PF10007.9 gi|336253029|ref|YP_004596136.1| - 0.0062 16.6 0.1 0.11 12.6 0.1 2.1 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) Nuc_N PF14448.6 gi|336253029|ref|YP_004596136.1| - 0.0068 16.2 0.5 0.013 15.4 0.1 1.6 2 0 0 2 2 2 1 Nuclease N terminal HTH_27 PF13463.6 gi|336253029|ref|YP_004596136.1| - 0.0076 16.7 0.0 0.015 15.7 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.22 gi|336253029|ref|YP_004596136.1| - 0.0077 16.1 0.0 0.014 15.3 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_23 PF13384.6 gi|336253029|ref|YP_004596136.1| - 0.013 15.3 0.2 0.022 14.5 0.2 1.3 1 0 0 1 1 1 0 Homeodomain-like domain Sigma70_r4 PF04545.16 gi|336253029|ref|YP_004596136.1| - 0.013 15.0 0.5 0.026 14.1 0.5 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 TrmB PF01978.19 gi|336253029|ref|YP_004596136.1| - 0.02 14.8 0.1 0.038 13.9 0.1 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Phage_antitermQ PF06530.12 gi|336253029|ref|YP_004596136.1| - 0.15 12.0 0.0 0.23 11.4 0.0 1.3 1 0 0 1 1 1 0 Phage antitermination protein Q HTH_10 PF04967.12 gi|336253029|ref|YP_004596136.1| - 0.17 11.8 0.3 0.37 10.6 0.3 1.5 1 0 0 1 1 1 0 HTH DNA binding domain Proton_antipo_M PF00361.20 gi|336253030|ref|YP_004596137.1| - 7.8e-39 133.6 19.2 7.8e-39 133.6 19.2 1.7 1 1 0 1 1 1 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|336253030|ref|YP_004596137.1| - 4.1e-10 39.6 0.9 4.1e-10 39.6 0.9 3.3 3 0 0 3 3 3 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DUF2309 PF10070.9 gi|336253031|ref|YP_004596138.1| - 1.5e-269 896.5 0.0 1.8e-269 896.3 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2309) LptF_LptG PF03739.14 gi|336253032|ref|YP_004596139.1| - 0.024 13.5 2.4 0.025 13.4 2.4 1.0 1 0 0 1 1 1 0 Lipopolysaccharide export system permease LptF/LptG YqzM PF14141.6 gi|336253032|ref|YP_004596139.1| - 0.074 13.1 10.9 0.71 10.0 1.8 2.1 2 0 0 2 2 2 0 YqzM-like protein LPG_synthase_TM PF03706.13 gi|336253032|ref|YP_004596139.1| - 0.45 10.0 9.7 0.94 8.9 9.8 1.5 1 1 0 1 1 1 0 Lysylphosphatidylglycerol synthase TM region MtrF PF09472.10 gi|336253032|ref|YP_004596139.1| - 1.8 8.0 8.8 3 7.3 2.0 2.1 2 0 0 2 2 2 0 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) FixQ PF05545.11 gi|336253032|ref|YP_004596139.1| - 3.3 7.8 5.8 4 7.5 0.2 2.2 2 0 0 2 2 2 0 Cbb3-type cytochrome oxidase component FixQ Pro_CA PF00484.19 gi|336253033|ref|YP_004596140.1| - 4.3e-26 92.1 0.0 5.8e-26 91.6 0.0 1.1 1 0 0 1 1 1 1 Carbonic anhydrase TetR_C_11 PF16859.5 gi|336253033|ref|YP_004596140.1| - 0.032 14.6 0.3 0.1 12.9 0.2 1.9 2 1 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain ADH_N_2 PF16884.5 gi|336253034|ref|YP_004596141.1| - 7.6e-42 141.6 0.1 1.3e-41 140.8 0.1 1.4 1 0 0 1 1 1 1 N-terminal domain of oxidoreductase ADH_zinc_N PF00107.26 gi|336253034|ref|YP_004596141.1| - 1.7e-23 83.0 0.0 2.4e-23 82.5 0.0 1.2 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|336253034|ref|YP_004596141.1| - 1.2e-09 39.3 0.0 2.2e-09 38.4 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Abhydrolase_1 PF00561.20 gi|336253035|ref|YP_004596142.1| - 3.3e-16 59.7 0.0 5.6e-16 58.9 0.0 1.5 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|336253035|ref|YP_004596142.1| - 2.3e-11 44.8 10.2 2.9e-11 44.4 10.2 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|336253035|ref|YP_004596142.1| - 3.9e-06 26.3 0.0 1e-05 24.9 0.0 1.6 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Esterase PF00756.20 gi|336253035|ref|YP_004596142.1| - 0.018 14.7 0.0 0.02 14.5 0.0 1.2 1 0 0 1 1 1 0 Putative esterase DUF2244 PF10003.9 gi|336253036|ref|YP_004596143.1| - 0.086 12.5 3.3 0.1 12.3 3.3 1.0 1 0 0 1 1 1 0 Integral membrane protein (DUF2244) SLATT_3 PF18184.1 gi|336253036|ref|YP_004596143.1| - 0.2 11.8 2.2 0.21 11.7 2.2 1.2 1 0 0 1 1 1 0 SMODS and SLOG-associating 2TM effector domain 3 ABC2_membrane PF01061.24 gi|336253037|ref|YP_004596144.1| - 3.2e-30 105.1 15.4 4.1e-30 104.8 15.4 1.2 1 0 0 1 1 1 1 ABC-2 type transporter ABC_tran PF00005.27 gi|336253038|ref|YP_004596145.1| - 2.1e-30 106.0 0.0 3.3e-30 105.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|336253038|ref|YP_004596145.1| - 1.1e-14 55.0 2.7 7.8e-10 39.0 0.1 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|336253038|ref|YP_004596145.1| - 1.3e-09 38.6 0.0 4.6e-09 36.9 0.0 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF4162) AAA_30 PF13604.6 gi|336253038|ref|YP_004596145.1| - 0.0006 19.6 0.0 0.0014 18.3 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|336253038|ref|YP_004596145.1| - 0.0052 17.3 0.4 0.011 16.3 0.1 1.6 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.17 gi|336253038|ref|YP_004596145.1| - 0.0088 15.8 0.1 2.4 7.9 0.0 2.3 2 0 0 2 2 2 1 IstB-like ATP binding protein SMC_N PF02463.19 gi|336253038|ref|YP_004596145.1| - 0.012 15.1 0.0 1.7 8.0 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|336253038|ref|YP_004596145.1| - 0.018 14.9 0.0 0.036 14.0 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_15 PF13175.6 gi|336253038|ref|YP_004596145.1| - 0.023 14.4 0.0 1.8 8.2 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain AAA_24 PF13479.6 gi|336253038|ref|YP_004596145.1| - 0.041 13.6 0.1 0.41 10.3 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|336253038|ref|YP_004596145.1| - 0.047 13.4 0.0 0.097 12.4 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain ATP_bind_1 PF03029.17 gi|336253038|ref|YP_004596145.1| - 0.048 13.4 0.0 0.27 11.0 0.0 1.9 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein MMR_HSR1 PF01926.23 gi|336253038|ref|YP_004596145.1| - 0.074 13.1 0.1 0.19 11.8 0.1 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase ATPase_2 PF01637.18 gi|336253038|ref|YP_004596145.1| - 0.1 12.5 0.0 0.2 11.5 0.0 1.5 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea NTPase_1 PF03266.15 gi|336253038|ref|YP_004596145.1| - 0.12 12.3 0.2 1.6 8.6 0.0 2.4 2 1 0 2 2 2 0 NTPase SRP54 PF00448.22 gi|336253038|ref|YP_004596145.1| - 0.15 11.7 0.0 0.26 10.9 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain FlbD PF06289.11 gi|336253038|ref|YP_004596145.1| - 0.27 10.9 1.2 1.2 8.8 0.3 2.2 2 0 0 2 2 2 0 Flagellar and Swarming motility proteins CBS PF00571.28 gi|336253039|ref|YP_004596146.1| - 1.8e-24 85.9 4.7 1.8e-12 47.5 0.7 2.5 2 0 0 2 2 2 2 CBS domain Peptidase_M50 PF02163.22 gi|336253039|ref|YP_004596146.1| - 1.5e-15 57.1 5.5 3.8e-08 32.9 0.1 3.2 2 1 1 3 3 3 2 Peptidase family M50 Peptidase_M50B PF13398.6 gi|336253039|ref|YP_004596146.1| - 0.00033 20.3 1.3 0.00033 20.3 1.3 2.3 1 1 1 3 3 3 1 Peptidase M50B-like DUF3267 PF11667.8 gi|336253039|ref|YP_004596146.1| - 0.002 18.4 0.7 0.002 18.4 0.7 2.2 2 0 0 2 2 2 1 Putative zincin peptidase ThrE PF06738.12 gi|336253039|ref|YP_004596146.1| - 6.6 6.0 10.1 0.14 11.5 1.9 2.0 2 0 0 2 2 2 0 Putative threonine/serine exporter TrmB PF01978.19 gi|336253040|ref|YP_004596147.1| - 6.2e-06 26.0 0.1 1.8e-05 24.5 0.0 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|336253040|ref|YP_004596147.1| - 6.9e-05 22.7 0.1 8.6e-05 22.3 0.1 1.2 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|336253040|ref|YP_004596147.1| - 0.00021 21.1 0.0 0.00029 20.7 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|336253040|ref|YP_004596147.1| - 0.00096 19.6 0.0 0.0013 19.1 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_IclR PF09339.10 gi|336253040|ref|YP_004596147.1| - 0.0027 17.5 0.4 0.004 16.9 0.4 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|336253040|ref|YP_004596147.1| - 0.032 14.1 0.1 0.046 13.6 0.1 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family B-block_TFIIIC PF04182.12 gi|336253040|ref|YP_004596147.1| - 0.04 14.1 0.0 0.054 13.7 0.0 1.2 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_20 PF12840.7 gi|336253040|ref|YP_004596147.1| - 0.059 13.4 0.1 0.089 12.9 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Ribosomal_L16 PF00252.18 gi|336253041|ref|YP_004596148.1| - 7.8e-32 110.1 0.0 8.9e-32 109.9 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e RimK PF08443.11 gi|336253043|ref|YP_004596150.1| - 3.1e-22 79.1 0.0 4.3e-22 78.6 0.0 1.1 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.16 gi|336253043|ref|YP_004596150.1| - 5.5e-12 45.4 0.0 8.2e-12 44.9 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.14 gi|336253043|ref|YP_004596150.1| - 2.5e-06 27.6 0.0 4.7e-06 26.7 0.0 1.4 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|336253043|ref|YP_004596150.1| - 1.4e-05 24.5 0.0 0.008 15.5 0.0 2.2 2 0 0 2 2 2 2 Sugar-transfer associated ATP-grasp Dala_Dala_lig_C PF07478.13 gi|336253043|ref|YP_004596150.1| - 0.0042 16.6 0.0 0.009 15.6 0.0 1.5 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus TTL PF03133.15 gi|336253043|ref|YP_004596150.1| - 0.0047 16.1 0.0 0.024 13.8 0.0 1.8 2 0 0 2 2 2 1 Tubulin-tyrosine ligase family ATPgrasp_TupA PF14305.6 gi|336253043|ref|YP_004596150.1| - 0.0082 16.0 0.0 0.018 14.9 0.0 1.5 2 0 0 2 2 2 1 TupA-like ATPgrasp R2K_3 PF14243.6 gi|336253043|ref|YP_004596150.1| - 0.042 13.9 0.3 0.061 13.3 0.3 1.3 1 0 0 1 1 1 0 ATP-grasp domain, R2K clade family 3 CPSase_L_D2 PF02786.17 gi|336253043|ref|YP_004596150.1| - 0.067 12.7 0.0 0.12 11.8 0.0 1.4 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain ArsA_HSP20 PF17886.1 gi|336253044|ref|YP_004596151.1| - 1.1e-20 73.0 0.0 1.5e-20 72.5 0.0 1.2 1 0 0 1 1 1 1 HSP20-like domain found in ArsA HSP20 PF00011.21 gi|336253044|ref|YP_004596151.1| - 5.6e-10 39.3 0.1 1.1e-08 35.1 0.1 2.0 1 1 0 1 1 1 1 Hsp20/alpha crystallin family GvpH PF05455.11 gi|336253044|ref|YP_004596151.1| - 6.4e-07 29.6 1.1 7.4e-07 29.4 1.1 1.2 1 0 0 1 1 1 1 GvpH PIH1_CS PF18201.1 gi|336253044|ref|YP_004596151.1| - 0.04 14.3 0.0 0.058 13.8 0.0 1.2 1 0 0 1 1 1 0 PIH1 CS-like domain Gp_dh_C PF02800.20 gi|336253045|ref|YP_004596152.1| - 1e-17 64.2 0.0 1.6e-17 63.6 0.0 1.3 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DapB_N PF01113.20 gi|336253045|ref|YP_004596152.1| - 1.8e-09 37.8 0.0 4.1e-09 36.6 0.0 1.7 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Gp_dh_N PF00044.24 gi|336253045|ref|YP_004596152.1| - 0.00013 22.2 0.0 0.00033 20.9 0.0 1.7 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|336253045|ref|YP_004596152.1| - 0.0013 18.2 0.3 0.11 11.8 0.2 2.3 1 1 1 2 2 2 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_3 PF03447.16 gi|336253045|ref|YP_004596152.1| - 0.0027 18.4 0.4 0.064 13.9 0.4 2.8 2 1 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|336253045|ref|YP_004596152.1| - 0.049 14.5 0.2 0.14 12.9 0.1 1.9 1 1 1 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold TrkA_N PF02254.18 gi|336253045|ref|YP_004596152.1| - 0.13 12.5 0.1 0.32 11.3 0.1 1.6 1 0 0 1 1 1 0 TrkA-N domain Gp_dh_C PF02800.20 gi|336253046|ref|YP_004596153.1| - 3.6e-62 208.6 0.0 4.9e-62 208.2 0.0 1.2 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Gp_dh_N PF00044.24 gi|336253046|ref|YP_004596153.1| - 6.7e-34 116.3 0.0 1.3e-33 115.3 0.0 1.5 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DapB_N PF01113.20 gi|336253046|ref|YP_004596153.1| - 0.011 15.8 0.0 0.043 13.9 0.0 2.0 2 0 0 2 2 2 0 Dihydrodipicolinate reductase, N-terminus ADH_zinc_N PF00107.26 gi|336253046|ref|YP_004596153.1| - 0.032 14.2 0.0 0.055 13.5 0.0 1.4 1 0 0 1 1 1 0 Zinc-binding dehydrogenase PGK PF00162.19 gi|336253047|ref|YP_004596154.1| - 1.2e-99 333.9 0.0 1.4e-99 333.6 0.0 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase DUF2048 PF09752.9 gi|336253048|ref|YP_004596155.1| - 0.047 12.8 0.0 0.058 12.5 0.0 1.1 1 0 0 1 1 1 0 Abhydrolase domain containing 18 CcmH PF03918.14 gi|336253048|ref|YP_004596155.1| - 0.061 12.6 0.0 0.13 11.5 0.0 1.5 1 0 0 1 1 1 0 Cytochrome C biogenesis protein CoA_binding_3 PF13727.6 gi|336253048|ref|YP_004596155.1| - 0.074 13.1 0.7 0.12 12.4 0.1 1.6 1 1 1 2 2 2 0 CoA-binding domain Peptidase_M29 PF02073.15 gi|336253049|ref|YP_004596156.1| - 6.6e-12 44.9 0.0 7.1e-11 41.5 0.0 1.9 2 0 0 2 2 2 1 Thermophilic metalloprotease (M29) Spore_YhcN_YlaJ PF09580.10 gi|336253049|ref|YP_004596156.1| - 0.93 9.6 4.2 11 6.1 0.1 3.0 3 0 0 3 3 3 0 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) HTH_20 PF12840.7 gi|336253050|ref|YP_004596157.1| - 2.7e-05 24.1 0.0 7.9e-05 22.6 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain DZR PF12773.7 gi|336253050|ref|YP_004596157.1| - 0.085 12.9 2.8 2.2 8.4 0.4 2.5 2 1 0 2 2 2 0 Double zinc ribbon Se-cys_synth_N PF12390.8 gi|336253050|ref|YP_004596157.1| - 0.65 10.3 2.5 0.57 10.4 0.2 2.2 3 0 0 3 3 3 0 Selenocysteine synthase N terminal Peptidase_M23 PF01551.22 gi|336253051|ref|YP_004596158.1| - 3.1e-21 75.4 0.1 1.5e-20 73.2 0.0 1.9 2 0 0 2 2 2 1 Peptidase family M23 Lar_restr_allev PF14354.6 gi|336253052|ref|YP_004596159.1| - 0.044 14.2 1.4 0.073 13.5 0.5 1.9 2 0 0 2 2 2 0 Restriction alleviation protein Lar DraK_HK_N PF18092.1 gi|336253052|ref|YP_004596159.1| - 0.11 13.0 11.7 0.59 10.6 1.2 3.3 2 1 1 3 3 3 0 DraK Histidine Kinase N-terminal domain zinc_ribbon_4 PF13717.6 gi|336253052|ref|YP_004596159.1| - 0.14 12.1 4.1 0.75 9.8 4.1 2.1 1 1 0 1 1 1 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|336253052|ref|YP_004596159.1| - 0.14 11.6 0.1 0.14 11.6 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-DNL PF05180.12 gi|336253052|ref|YP_004596159.1| - 0.15 12.0 0.3 0.29 11.1 0.3 1.4 1 0 0 1 1 1 0 DNL zinc finger Zn-ribbon_8 PF09723.10 gi|336253052|ref|YP_004596159.1| - 0.25 11.5 3.0 9.9 6.4 0.1 2.5 2 0 0 2 2 2 0 Zinc ribbon domain zinc_ribbon_5 PF13719.6 gi|336253052|ref|YP_004596159.1| - 2.8 7.8 4.3 7.9 6.3 4.3 1.8 1 1 0 1 1 1 0 zinc-ribbon domain SBF_like PF13593.6 gi|336253053|ref|YP_004596160.1| - 9.1e-10 38.3 21.8 8.8e-09 35.1 21.8 2.0 1 1 0 1 1 1 1 SBF-like CPA transporter family (DUF4137) SBF PF01758.16 gi|336253053|ref|YP_004596160.1| - 5.6e-08 32.7 12.1 5.6e-08 32.7 12.1 2.2 1 1 1 3 3 3 1 Sodium Bile acid symporter family Tox-WTIP PF15654.6 gi|336253053|ref|YP_004596160.1| - 2.5 8.6 5.2 5.9 7.4 0.4 2.8 3 0 0 3 3 3 0 Toxin with a conserved tryptophan and TIP tripeptide motif PCMT PF01135.19 gi|336253054|ref|YP_004596161.1| - 1.9e-62 210.7 0.0 2.2e-62 210.5 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_25 PF13649.6 gi|336253054|ref|YP_004596161.1| - 1.2e-06 29.1 0.0 2.5e-06 28.1 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|336253054|ref|YP_004596161.1| - 5.3e-05 23.1 0.0 7.1e-05 22.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|336253054|ref|YP_004596161.1| - 0.00012 21.3 0.0 0.00016 20.9 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase CMAS PF02353.20 gi|336253054|ref|YP_004596161.1| - 0.00014 21.3 0.0 0.00021 20.7 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase GCD14 PF08704.10 gi|336253054|ref|YP_004596161.1| - 0.00019 21.2 0.0 0.00033 20.4 0.0 1.3 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Fibrillarin PF01269.17 gi|336253054|ref|YP_004596161.1| - 0.016 14.4 0.0 0.022 13.9 0.0 1.1 1 0 0 1 1 1 0 Fibrillarin DUF938 PF06080.12 gi|336253054|ref|YP_004596161.1| - 0.02 14.6 0.0 0.028 14.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF938) Methyltransf_18 PF12847.7 gi|336253054|ref|YP_004596161.1| - 0.025 14.5 0.0 0.04 13.8 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_32 PF13679.6 gi|336253054|ref|YP_004596161.1| - 0.054 13.5 0.0 0.082 12.9 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain DOT1 PF08123.13 gi|336253054|ref|YP_004596161.1| - 0.089 12.3 0.0 0.14 11.7 0.0 1.2 1 0 0 1 1 1 0 Histone methylation protein DOT1 Methyltransf_23 PF13489.6 gi|336253054|ref|YP_004596161.1| - 0.13 12.1 0.0 0.15 11.9 0.0 1.4 1 1 0 1 1 1 0 Methyltransferase domain MTS PF05175.14 gi|336253054|ref|YP_004596161.1| - 0.16 11.5 0.0 0.26 10.8 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain DUF2795 PF11387.8 gi|336253054|ref|YP_004596161.1| - 0.2 11.9 0.2 0.2 11.9 0.2 2.0 3 0 0 3 3 2 0 Protein of unknown function (DUF2795) PCMT PF01135.19 gi|336253055|ref|YP_004596162.1| - 1.6e-36 126.1 0.0 2.1e-36 125.7 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.6 gi|336253055|ref|YP_004596162.1| - 2.9e-08 33.7 0.0 4.2e-08 33.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|336253055|ref|YP_004596162.1| - 1.4e-05 24.7 0.0 2.2e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|336253055|ref|YP_004596162.1| - 2.3e-05 25.0 0.1 5.6e-05 23.8 0.0 1.7 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|336253055|ref|YP_004596162.1| - 0.022 15.5 0.0 0.058 14.1 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain PrmA PF06325.13 gi|336253055|ref|YP_004596162.1| - 0.029 13.8 0.0 0.044 13.2 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Sacchrp_dh_NADP PF03435.18 gi|336253055|ref|YP_004596162.1| - 0.034 14.4 0.1 0.074 13.3 0.0 1.6 2 0 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain Methyltr_RsmB-F PF01189.17 gi|336253055|ref|YP_004596162.1| - 0.038 13.6 0.0 0.072 12.7 0.0 1.4 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F CMAS PF02353.20 gi|336253055|ref|YP_004596162.1| - 0.039 13.2 0.0 0.061 12.6 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Fibrillarin PF01269.17 gi|336253055|ref|YP_004596162.1| - 0.049 12.8 0.0 0.064 12.4 0.0 1.2 1 0 0 1 1 1 0 Fibrillarin Met_10 PF02475.16 gi|336253055|ref|YP_004596162.1| - 0.052 13.3 0.1 0.093 12.5 0.1 1.3 1 0 0 1 1 1 0 Met-10+ like-protein ACP_syn_III_C PF08541.10 gi|336253055|ref|YP_004596162.1| - 0.079 13.1 0.1 0.18 12.0 0.1 1.5 1 0 0 1 1 1 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BAT PF15915.5 gi|336253056|ref|YP_004596163.1| - 2.9e-32 111.7 10.9 2.9e-32 111.7 10.9 2.9 2 0 0 2 2 2 1 GAF and HTH_10 associated domain GAF_2 PF13185.6 gi|336253056|ref|YP_004596163.1| - 1.1e-25 90.6 7.7 1.5e-14 54.5 0.9 2.6 2 0 0 2 2 2 2 GAF domain Response_reg PF00072.24 gi|336253056|ref|YP_004596163.1| - 1.3e-22 80.1 0.0 3.3e-22 78.8 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain HTH_10 PF04967.12 gi|336253056|ref|YP_004596163.1| - 6.6e-20 70.7 0.1 2.1e-19 69.0 0.1 2.0 1 0 0 1 1 1 1 HTH DNA binding domain GAF_3 PF13492.6 gi|336253056|ref|YP_004596163.1| - 3.1e-09 37.3 0.2 0.00041 20.7 0.0 2.9 2 1 0 2 2 2 2 GAF domain OKR_DC_1_N PF03709.15 gi|336253056|ref|YP_004596163.1| - 5e-06 26.8 0.3 4.1e-05 23.8 0.0 2.6 3 0 0 3 3 3 1 Orn/Lys/Arg decarboxylase, N-terminal domain GAF PF01590.26 gi|336253056|ref|YP_004596163.1| - 2.4e-05 24.9 0.1 0.00035 21.2 0.0 2.5 2 0 0 2 2 2 1 GAF domain RasGAP_C PF03836.15 gi|336253056|ref|YP_004596163.1| - 0.39 10.9 2.3 0.89 9.7 0.1 2.2 2 0 0 2 2 2 0 RasGAP C-terminus MCPsignal PF00015.21 gi|336253057|ref|YP_004596164.1| - 5.7e-41 140.2 25.5 5.7e-41 140.2 25.5 5.9 2 1 4 6 6 6 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 gi|336253057|ref|YP_004596164.1| - 4.9e-08 33.2 16.0 7.5e-06 26.2 0.1 5.2 5 1 0 5 5 5 2 HAMP domain dCache_1 PF02743.18 gi|336253057|ref|YP_004596164.1| - 1.1e-06 28.6 0.4 1.1e-06 28.6 0.4 5.1 3 2 1 5 5 5 2 Cache domain ATP-synt_B PF00430.18 gi|336253057|ref|YP_004596164.1| - 0.0021 18.2 27.9 0.0021 18.2 27.9 5.4 4 1 0 5 5 4 1 ATP synthase B/B' CF(0) TPR_MLP1_2 PF07926.12 gi|336253057|ref|YP_004596164.1| - 0.0096 16.0 12.0 0.0096 16.0 12.0 5.6 2 1 3 5 5 5 3 TPR/MLP1/MLP2-like protein SnoaL_2 PF12680.7 gi|336253057|ref|YP_004596164.1| - 0.15 12.7 7.8 8.6 7.1 0.0 4.5 3 1 2 5 5 5 0 SnoaL-like domain DUF948 PF06103.11 gi|336253057|ref|YP_004596164.1| - 0.34 11.2 51.9 0.75 10.1 1.1 8.2 2 1 7 9 9 9 0 Bacterial protein of unknown function (DUF948) Mod_r PF07200.13 gi|336253057|ref|YP_004596164.1| - 0.43 10.7 45.2 0.6 10.2 0.0 5.3 2 2 2 4 4 4 0 Modifier of rudimentary (Mod(r)) protein SnoaL PF07366.12 gi|336253057|ref|YP_004596164.1| - 0.54 10.1 4.8 2.9 7.7 0.1 3.9 3 1 0 4 4 4 0 SnoaL-like polyketide cyclase DASH_Dam1 PF08653.10 gi|336253057|ref|YP_004596164.1| - 0.86 9.5 10.6 3.6 7.4 0.2 5.3 5 1 1 6 6 6 0 DASH complex subunit Dam1 Fib_alpha PF08702.10 gi|336253057|ref|YP_004596164.1| - 4.4 7.5 41.0 0.029 14.6 3.5 5.3 3 2 3 6 6 6 0 Fibrinogen alpha/beta chain family Laminin_II PF06009.12 gi|336253057|ref|YP_004596164.1| - 4.8 7.2 57.3 0.041 13.9 6.9 6.6 2 1 5 7 7 7 0 Laminin Domain II NAD_synthase PF02540.17 gi|336253058|ref|YP_004596165.1| - 3.8e-81 271.8 0.0 4.4e-81 271.6 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.16 gi|336253058|ref|YP_004596165.1| - 8.1e-05 21.6 0.0 0.011 14.6 0.0 2.2 2 0 0 2 2 2 2 tRNA methyl transferase HTH_23 PF13384.6 gi|336253058|ref|YP_004596165.1| - 0.0043 16.8 0.1 1.6 8.6 0.1 3.6 4 0 0 4 4 4 1 Homeodomain-like domain HTH_Tnp_ISL3 PF13542.6 gi|336253058|ref|YP_004596165.1| - 0.043 13.2 0.1 0.32 10.4 0.1 2.5 2 1 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 FLYWCH_N PF15423.6 gi|336253058|ref|YP_004596165.1| - 0.047 13.8 0.0 0.13 12.4 0.0 1.6 2 0 0 2 2 2 0 FLYWCH-type zinc finger-containing protein QueC PF06508.13 gi|336253058|ref|YP_004596165.1| - 0.084 12.4 0.0 0.28 10.6 0.0 1.8 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC Acetyltransf_3 PF13302.7 gi|336253059|ref|YP_004596166.1| - 4e-27 95.6 0.0 4.7e-27 95.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|336253059|ref|YP_004596166.1| - 1.4e-13 51.1 0.1 1.8e-13 50.7 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.7 gi|336253059|ref|YP_004596166.1| - 4.4e-12 46.4 0.0 5e-12 46.2 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|336253059|ref|YP_004596166.1| - 2e-07 30.8 0.0 6.9e-07 29.0 0.0 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|336253059|ref|YP_004596166.1| - 0.00031 21.1 0.0 0.0005 20.5 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain TetR_N PF00440.23 gi|336253059|ref|YP_004596166.1| - 0.055 13.3 0.1 0.11 12.3 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family Mrr_cat PF04471.12 gi|336253061|ref|YP_004596168.1| - 3.4e-27 94.8 0.2 4.6e-27 94.3 0.2 1.2 1 0 0 1 1 1 1 Restriction endonuclease Mrr_cat_2 PF13156.6 gi|336253061|ref|YP_004596168.1| - 4.7e-15 55.6 0.5 6.3e-15 55.2 0.5 1.2 1 0 0 1 1 1 1 Restriction endonuclease Epimerase PF01370.21 gi|336253062|ref|YP_004596169.1| - 2.7e-32 112.2 0.2 1.1e-31 110.2 0.2 1.8 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|336253062|ref|YP_004596169.1| - 5.1e-22 78.7 0.0 8.6e-21 74.7 0.0 2.5 2 2 0 2 2 2 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|336253062|ref|YP_004596169.1| - 9.5e-16 57.7 0.3 1.9e-15 56.8 0.3 1.4 1 1 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|336253062|ref|YP_004596169.1| - 2.3e-10 40.1 0.0 2.6e-08 33.3 0.0 2.2 1 1 1 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.6 gi|336253062|ref|YP_004596169.1| - 2e-08 34.3 0.8 2.8e-08 33.9 0.8 1.2 1 0 0 1 1 1 1 NAD(P)H-binding 3Beta_HSD PF01073.19 gi|336253062|ref|YP_004596169.1| - 2.8e-08 33.1 0.0 3.9e-08 32.6 0.0 1.3 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|336253062|ref|YP_004596169.1| - 2.5e-06 26.8 0.1 0.00022 20.5 0.1 2.9 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein adh_short PF00106.25 gi|336253062|ref|YP_004596169.1| - 0.00029 20.4 0.3 0.0033 16.9 0.2 2.5 2 1 0 2 2 2 1 short chain dehydrogenase NmrA PF05368.13 gi|336253062|ref|YP_004596169.1| - 0.047 13.2 0.2 0.2 11.2 0.0 2.1 3 0 0 3 3 3 0 NmrA-like family KR PF08659.10 gi|336253062|ref|YP_004596169.1| - 0.09 12.7 0.1 0.3 11.0 0.1 1.9 1 1 0 1 1 1 0 KR domain AAA_33 PF13671.6 gi|336253063|ref|YP_004596170.1| - 1.3e-12 48.1 0.5 2.4e-12 47.2 0.5 1.5 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|336253063|ref|YP_004596170.1| - 1e-08 35.8 0.1 8.6e-05 23.1 0.0 2.3 1 1 1 2 2 2 2 AAA domain KTI12 PF08433.10 gi|336253063|ref|YP_004596170.1| - 4.2e-07 29.7 0.0 9.7e-06 25.2 0.0 2.0 1 1 0 1 1 1 1 Chromatin associated protein KTI12 AAA_22 PF13401.6 gi|336253063|ref|YP_004596170.1| - 2.8e-06 27.6 0.0 1.2e-05 25.6 0.0 2.0 1 1 1 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|336253063|ref|YP_004596170.1| - 3.9e-05 24.1 0.0 5.8e-05 23.5 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain NTPase_1 PF03266.15 gi|336253063|ref|YP_004596170.1| - 7.9e-05 22.6 0.0 0.00018 21.5 0.0 2.0 1 1 0 1 1 1 1 NTPase dNK PF01712.19 gi|336253063|ref|YP_004596170.1| - 0.00012 22.0 0.0 0.23 11.3 0.0 2.4 1 1 0 2 2 2 2 Deoxynucleoside kinase AAA_28 PF13521.6 gi|336253063|ref|YP_004596170.1| - 0.00036 20.8 0.2 0.00074 19.8 0.2 2.0 1 1 0 1 1 1 1 AAA domain CPT PF07931.12 gi|336253063|ref|YP_004596170.1| - 0.00045 20.1 0.2 0.017 15.0 0.3 2.0 1 1 1 2 2 2 1 Chloramphenicol phosphotransferase-like protein AAA_30 PF13604.6 gi|336253063|ref|YP_004596170.1| - 0.00072 19.3 0.0 0.0026 17.5 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_5 PF07728.14 gi|336253063|ref|YP_004596170.1| - 0.0016 18.5 0.0 0.0045 17.0 0.0 1.7 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) Zeta_toxin PF06414.12 gi|336253063|ref|YP_004596170.1| - 0.0025 17.1 0.0 0.014 14.7 0.0 2.1 1 1 1 2 2 2 1 Zeta toxin APS_kinase PF01583.20 gi|336253063|ref|YP_004596170.1| - 0.0026 17.6 0.0 0.06 13.2 0.0 2.5 1 1 0 1 1 1 1 Adenylylsulphate kinase cobW PF02492.19 gi|336253063|ref|YP_004596170.1| - 0.0034 17.0 0.0 0.0051 16.4 0.0 1.4 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA PF00004.29 gi|336253063|ref|YP_004596170.1| - 0.004 17.6 0.0 0.0077 16.7 0.0 1.5 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) PRK PF00485.18 gi|336253063|ref|YP_004596170.1| - 0.005 16.6 0.0 0.0095 15.7 0.0 1.5 1 1 1 2 2 2 1 Phosphoribulokinase / Uridine kinase family AAA_19 PF13245.6 gi|336253063|ref|YP_004596170.1| - 0.0077 16.6 0.0 0.0085 16.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|336253063|ref|YP_004596170.1| - 0.008 16.6 0.0 0.18 12.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.6 gi|336253063|ref|YP_004596170.1| - 0.0088 16.1 0.0 0.011 15.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|336253063|ref|YP_004596170.1| - 0.011 15.6 0.0 0.022 14.7 0.0 1.4 1 1 0 1 1 1 0 RsgA GTPase MMR_HSR1 PF01926.23 gi|336253063|ref|YP_004596170.1| - 0.012 15.7 0.0 0.018 15.1 0.0 1.5 1 1 0 1 1 1 0 50S ribosome-binding GTPase RNA_helicase PF00910.22 gi|336253063|ref|YP_004596170.1| - 0.016 15.6 0.0 0.023 15.1 0.0 1.3 1 0 0 1 1 1 0 RNA helicase Thymidylate_kin PF02223.17 gi|336253063|ref|YP_004596170.1| - 0.018 14.8 0.0 0.27 10.9 0.0 2.1 2 0 0 2 2 2 0 Thymidylate kinase ABC_tran PF00005.27 gi|336253063|ref|YP_004596170.1| - 0.022 15.3 0.0 0.025 15.1 0.0 1.4 1 1 0 1 1 1 0 ABC transporter RuvB_N PF05496.12 gi|336253063|ref|YP_004596170.1| - 0.022 14.5 0.0 0.076 12.8 0.0 1.8 1 1 1 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain ATP_bind_1 PF03029.17 gi|336253063|ref|YP_004596170.1| - 0.022 14.5 0.0 0.038 13.8 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein MobB PF03205.14 gi|336253063|ref|YP_004596170.1| - 0.03 14.2 0.0 0.089 12.7 0.0 1.8 1 1 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Mg_chelatase PF01078.21 gi|336253063|ref|YP_004596170.1| - 0.034 13.5 0.0 0.052 12.9 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI TsaE PF02367.17 gi|336253063|ref|YP_004596170.1| - 0.035 14.1 0.0 0.055 13.5 0.0 1.5 1 1 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Lactamase_B_2 PF12706.7 gi|336253063|ref|YP_004596170.1| - 0.047 13.2 0.1 0.082 12.4 0.1 1.4 1 1 0 1 1 1 0 Beta-lactamase superfamily domain AAA_24 PF13479.6 gi|336253063|ref|YP_004596170.1| - 0.049 13.4 0.0 0.07 12.8 0.0 1.5 1 1 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|336253063|ref|YP_004596170.1| - 0.054 13.4 0.0 0.054 13.4 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_25 PF13481.6 gi|336253063|ref|YP_004596170.1| - 0.066 12.8 0.1 0.1 12.2 0.1 1.5 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|336253063|ref|YP_004596170.1| - 0.067 13.1 0.0 0.095 12.6 0.0 1.3 1 0 0 1 1 1 0 NACHT domain IstB_IS21 PF01695.17 gi|336253063|ref|YP_004596170.1| - 0.088 12.5 0.0 0.3 10.8 0.1 1.9 2 1 0 2 2 2 0 IstB-like ATP binding protein AAA_7 PF12775.7 gi|336253063|ref|YP_004596170.1| - 0.097 12.2 0.0 0.47 9.9 0.0 1.9 2 0 0 2 2 2 0 P-loop containing dynein motor region T2SSE PF00437.20 gi|336253063|ref|YP_004596170.1| - 0.1 11.7 0.0 0.14 11.1 0.0 1.5 1 1 0 1 1 1 0 Type II/IV secretion system protein NB-ARC PF00931.22 gi|336253063|ref|YP_004596170.1| - 0.11 11.7 0.0 0.13 11.4 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_23 PF13476.6 gi|336253063|ref|YP_004596170.1| - 0.11 13.0 0.0 0.21 12.0 0.0 1.5 2 0 0 2 2 1 0 AAA domain Guanylate_kin PF00625.21 gi|336253063|ref|YP_004596170.1| - 0.11 12.1 0.0 0.2 11.3 0.0 1.5 2 0 0 2 2 1 0 Guanylate kinase MeaB PF03308.16 gi|336253063|ref|YP_004596170.1| - 0.12 11.3 0.0 0.17 10.8 0.0 1.2 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB Rad17 PF03215.15 gi|336253063|ref|YP_004596170.1| - 0.13 12.2 0.0 0.17 11.8 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain Roc PF08477.13 gi|336253063|ref|YP_004596170.1| - 0.2 11.9 0.0 0.38 11.0 0.0 1.5 1 1 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase SRP54 PF00448.22 gi|336253063|ref|YP_004596170.1| - 0.21 11.2 0.0 0.61 9.7 0.0 1.7 1 1 1 2 2 2 0 SRP54-type protein, GTPase domain TAT_signal PF10518.9 gi|336253064|ref|YP_004596171.1| - 0.2 11.5 2.7 0.37 10.7 2.7 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence MR_MLE_C PF13378.6 gi|336253065|ref|YP_004596172.1| - 2e-42 145.2 0.2 2.9e-42 144.7 0.2 1.3 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|336253065|ref|YP_004596172.1| - 1.6e-12 47.7 0.0 2.6e-12 47.0 0.0 1.3 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MAAL_C PF07476.11 gi|336253065|ref|YP_004596172.1| - 0.0012 18.0 0.0 0.0021 17.3 0.0 1.3 1 0 0 1 1 1 1 Methylaspartate ammonia-lyase C-terminus Enolase_N PF03952.16 gi|336253065|ref|YP_004596172.1| - 0.047 13.9 0.0 0.11 12.7 0.0 1.5 1 1 0 1 1 1 0 Enolase, N-terminal domain HMGL-like PF00682.19 gi|336253065|ref|YP_004596172.1| - 0.1 12.1 0.1 0.98 8.9 0.0 2.2 3 0 0 3 3 3 0 HMGL-like DUF1611 PF07755.11 gi|336253066|ref|YP_004596173.1| - 7.7e-72 240.8 0.2 1.1e-71 240.3 0.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1611_C) P-loop domain DUF1611_N PF17396.2 gi|336253066|ref|YP_004596173.1| - 4.4e-31 107.0 0.0 8e-30 102.9 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF1611_N) Rossmann-like domain acVLRF1 PF18859.1 gi|336253067|ref|YP_004596174.1| - 6.6e-36 123.5 1.4 6.6e-36 123.5 1.4 2.5 2 1 0 2 2 1 1 Actinobacteria/chloroflexi VLRF1 release factor baeRF_family10 PF18854.1 gi|336253067|ref|YP_004596174.1| - 7.8e-08 32.7 0.3 7.8e-08 32.7 0.3 2.1 2 1 0 2 2 1 1 Bacterial archaeo-eukaryotic release factor family 10 eRF1_2 PF03464.15 gi|336253067|ref|YP_004596174.1| - 4.4e-06 27.0 0.1 8.9e-05 22.8 0.0 2.2 2 0 0 2 2 2 1 eRF1 domain 2 ERM PF00769.19 gi|336253067|ref|YP_004596174.1| - 0.0022 17.9 5.7 0.0022 17.9 5.7 1.5 2 0 0 2 2 2 1 Ezrin/radixin/moesin family DUF1192 PF06698.11 gi|336253067|ref|YP_004596174.1| - 0.0038 17.3 16.5 0.075 13.1 8.0 3.5 2 1 0 3 3 3 2 Protein of unknown function (DUF1192) DUF3450 PF11932.8 gi|336253067|ref|YP_004596174.1| - 0.0046 16.3 4.2 0.0046 16.3 4.2 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF3450) Taxilin PF09728.9 gi|336253067|ref|YP_004596174.1| - 0.0053 16.0 3.2 0.0088 15.3 3.2 1.2 1 0 0 1 1 1 1 Myosin-like coiled-coil protein GAS PF13851.6 gi|336253067|ref|YP_004596174.1| - 0.0069 15.8 1.5 0.029 13.7 1.2 1.9 2 0 0 2 2 2 1 Growth-arrest specific micro-tubule binding TPR_MLP1_2 PF07926.12 gi|336253067|ref|YP_004596174.1| - 0.0094 16.0 6.3 0.0094 16.0 6.3 1.9 2 0 0 2 2 2 1 TPR/MLP1/MLP2-like protein Tropomyosin PF00261.20 gi|336253067|ref|YP_004596174.1| - 0.011 15.1 10.2 0.011 15.1 10.2 2.0 2 1 0 2 2 2 0 Tropomyosin DUF1664 PF07889.12 gi|336253067|ref|YP_004596174.1| - 0.026 14.6 2.7 0.037 14.1 1.3 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) ADIP PF11559.8 gi|336253067|ref|YP_004596174.1| - 0.032 14.3 3.4 0.054 13.6 3.4 1.4 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding YlqD PF11068.8 gi|336253067|ref|YP_004596174.1| - 0.037 14.4 0.7 0.072 13.5 0.7 1.4 1 0 0 1 1 1 0 YlqD protein AAA_13 PF13166.6 gi|336253067|ref|YP_004596174.1| - 0.037 12.7 0.4 0.05 12.3 0.4 1.2 1 0 0 1 1 1 0 AAA domain Cep57_MT_bd PF06657.13 gi|336253067|ref|YP_004596174.1| - 0.064 13.7 7.2 3 8.4 2.3 2.6 1 1 1 2 2 2 0 Centrosome microtubule-binding domain of Cep57 ATG16 PF08614.11 gi|336253067|ref|YP_004596174.1| - 0.089 13.0 9.2 0.16 12.2 9.2 1.4 1 0 0 1 1 1 0 Autophagy protein 16 (ATG16) FapA PF03961.13 gi|336253067|ref|YP_004596174.1| - 0.11 11.0 2.0 0.093 11.3 0.9 1.3 2 0 0 2 2 1 0 Flagellar Assembly Protein A DUF724 PF05266.14 gi|336253067|ref|YP_004596174.1| - 0.11 12.3 0.4 0.19 11.6 0.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF724) TraF_2 PF13729.6 gi|336253067|ref|YP_004596174.1| - 0.14 11.5 10.5 0.11 11.9 3.3 2.3 1 1 1 2 2 2 0 F plasmid transfer operon, TraF, protein Atg14 PF10186.9 gi|336253067|ref|YP_004596174.1| - 0.16 11.0 1.6 0.27 10.3 1.6 1.4 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 EzrA PF06160.12 gi|336253067|ref|YP_004596174.1| - 0.17 10.1 3.4 0.099 10.8 1.4 1.5 2 0 0 2 2 2 0 Septation ring formation regulator, EzrA Dynamitin PF04912.14 gi|336253067|ref|YP_004596174.1| - 0.17 11.1 5.3 0.11 11.9 3.2 1.5 2 0 0 2 2 2 0 Dynamitin Spc7 PF08317.11 gi|336253067|ref|YP_004596174.1| - 0.2 10.5 4.8 0.34 9.7 4.8 1.4 1 0 0 1 1 1 0 Spc7 kinetochore protein PDCD7 PF16021.5 gi|336253067|ref|YP_004596174.1| - 0.21 10.7 6.4 0.37 9.8 6.4 1.3 1 0 0 1 1 1 0 Programmed cell death protein 7 HSP70 PF00012.20 gi|336253067|ref|YP_004596174.1| - 0.21 9.7 1.9 1.9 6.6 1.3 2.0 2 0 0 2 2 2 0 Hsp70 protein Golgin_A5 PF09787.9 gi|336253067|ref|YP_004596174.1| - 0.24 10.8 5.2 0.42 10.0 5.2 1.4 1 0 0 1 1 1 0 Golgin subfamily A member 5 DUF1515 PF07439.11 gi|336253067|ref|YP_004596174.1| - 0.25 11.4 3.1 0.63 10.1 3.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1515) bZIP_2 PF07716.15 gi|336253067|ref|YP_004596174.1| - 0.34 11.0 19.1 0.11 12.6 2.4 3.1 3 0 0 3 3 2 0 Basic region leucine zipper TMF_DNA_bd PF12329.8 gi|336253067|ref|YP_004596174.1| - 0.4 10.7 7.5 7.1 6.7 6.8 2.4 1 1 0 1 1 1 0 TATA element modulatory factor 1 DNA binding Prefoldin PF02996.17 gi|336253067|ref|YP_004596174.1| - 0.43 10.5 6.9 9.4 6.2 0.9 3.7 3 1 1 4 4 4 0 Prefoldin subunit Nup188_C PF18378.1 gi|336253067|ref|YP_004596174.1| - 0.58 8.9 4.5 0.85 8.4 4.5 1.2 1 0 0 1 1 1 0 Nuclear pore protein NUP188 C-terminal domain Ax_dynein_light PF10211.9 gi|336253067|ref|YP_004596174.1| - 0.6 10.0 6.0 1.2 9.1 6.0 1.4 1 0 0 1 1 1 0 Axonemal dynein light chain APG6_N PF17675.1 gi|336253067|ref|YP_004596174.1| - 1 9.9 17.2 1.8 9.1 13.5 2.5 2 1 0 2 2 2 0 Apg6 coiled-coil region Tropomyosin_1 PF12718.7 gi|336253067|ref|YP_004596174.1| - 1.4 9.1 18.5 2.5 8.2 14.4 2.3 2 1 0 2 2 2 0 Tropomyosin like LPP PF04728.13 gi|336253067|ref|YP_004596174.1| - 1.4 9.4 5.4 16 6.0 0.1 2.7 1 1 1 2 2 2 0 Lipoprotein leucine-zipper TSC22 PF01166.18 gi|336253067|ref|YP_004596174.1| - 2.6 8.4 5.4 15 6.0 0.4 2.5 2 0 0 2 2 2 0 TSC-22/dip/bun family HAUS5 PF14817.6 gi|336253067|ref|YP_004596174.1| - 2.8 6.6 6.8 4.1 6.0 6.8 1.2 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 5 Spc24 PF08286.11 gi|336253067|ref|YP_004596174.1| - 3.5 7.9 5.9 3.9 7.8 1.5 2.4 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 Fmp27_WPPW PF10359.9 gi|336253067|ref|YP_004596174.1| - 4.6 6.0 5.4 1.5 7.6 2.4 1.6 2 0 0 2 2 2 0 RNA pol II promoter Fmp27 protein domain Phage_Mu_Gam PF07352.12 gi|336253067|ref|YP_004596174.1| - 4.8 7.1 10.1 2.1 8.2 6.5 2.2 2 1 0 2 2 2 0 Bacteriophage Mu Gam like protein DivIC PF04977.15 gi|336253067|ref|YP_004596174.1| - 5.8 6.8 11.9 22 4.9 3.3 2.8 1 1 1 2 2 2 0 Septum formation initiator OmpH PF03938.14 gi|336253067|ref|YP_004596174.1| - 5.9 7.2 7.1 0.96 9.8 3.5 1.5 2 0 0 2 2 1 0 Outer membrane protein (OmpH-like) DUF4140 PF13600.6 gi|336253067|ref|YP_004596174.1| - 7.4 7.1 16.6 17 5.9 4.3 3.5 2 1 2 4 4 3 0 N-terminal domain of unknown function (DUF4140) FUSC PF04632.12 gi|336253067|ref|YP_004596174.1| - 7.8 4.9 8.8 1.4 7.4 5.2 1.5 2 0 0 2 2 2 0 Fusaric acid resistance protein family DUF883 PF05957.13 gi|336253067|ref|YP_004596174.1| - 8.2 7.1 15.7 23 5.7 0.1 3.0 2 1 1 3 3 3 0 Bacterial protein of unknown function (DUF883) PSD2 PF07624.11 gi|336253068|ref|YP_004596175.1| - 0.11 12.3 0.0 8 6.3 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1585) Collagen PF01391.18 gi|336253069|ref|YP_004596176.1| - 0.014 15.2 30.1 0.014 15.2 30.1 4.5 2 1 2 4 4 4 0 Collagen triple helix repeat (20 copies) DUF4349 PF14257.6 gi|336253069|ref|YP_004596176.1| - 0.016 14.7 4.4 0.032 13.7 4.4 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4349) PilJ PF13675.6 gi|336253069|ref|YP_004596176.1| - 0.055 13.5 1.8 0.1 12.6 1.8 1.5 1 0 0 1 1 1 0 Type IV pili methyl-accepting chemotaxis transducer N-term SlyX PF04102.12 gi|336253069|ref|YP_004596176.1| - 0.089 13.4 2.3 0.4 11.3 2.3 2.3 1 0 0 1 1 1 0 SlyX FUSC PF04632.12 gi|336253069|ref|YP_004596176.1| - 0.13 10.8 3.6 0.17 10.4 3.6 1.2 1 0 0 1 1 1 0 Fusaric acid resistance protein family ABC_tran_CTD PF16326.5 gi|336253069|ref|YP_004596176.1| - 0.14 12.4 4.4 0.2 11.9 3.2 1.7 1 1 1 2 2 2 0 ABC transporter C-terminal domain CENP-F_leu_zip PF10473.9 gi|336253069|ref|YP_004596176.1| - 0.15 12.1 1.9 0.2 11.6 1.9 1.2 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 PRKG1_interact PF15898.5 gi|336253069|ref|YP_004596176.1| - 0.24 12.3 3.3 0.38 11.7 3.3 1.3 1 0 0 1 1 1 0 cGMP-dependent protein kinase interacting domain Spc7 PF08317.11 gi|336253069|ref|YP_004596176.1| - 0.37 9.6 2.2 0.51 9.2 2.2 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein CLZ PF16526.5 gi|336253069|ref|YP_004596176.1| - 1.1 9.6 3.4 2.4 8.6 2.9 1.8 1 1 0 1 1 1 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels HTH_5 PF01022.20 gi|336253070|ref|YP_004596177.1| - 7.7e-21 73.7 0.2 5e-17 61.5 0.1 2.5 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|336253070|ref|YP_004596177.1| - 3.4e-15 55.8 1.8 4.5e-12 45.8 0.3 2.5 2 0 0 2 2 2 2 Helix-turn-helix domain TrmB PF01978.19 gi|336253070|ref|YP_004596177.1| - 3.6e-14 52.4 0.2 6.8e-06 25.9 0.0 2.3 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|336253070|ref|YP_004596177.1| - 5.2e-13 48.7 0.6 2.7e-07 30.3 0.1 2.4 2 0 0 2 2 2 2 MarR family HTH_24 PF13412.6 gi|336253070|ref|YP_004596177.1| - 2.5e-09 36.5 0.6 5.1e-07 29.1 0.3 3.0 2 1 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|336253070|ref|YP_004596177.1| - 4e-09 36.3 0.4 0.00011 22.0 0.1 2.5 2 0 0 2 2 2 2 Crp-like helix-turn-helix domain MarR PF01047.22 gi|336253070|ref|YP_004596177.1| - 5.8e-09 35.8 0.1 2.5e-06 27.3 0.0 2.4 2 0 0 2 2 2 1 MarR family Rrf2 PF02082.20 gi|336253070|ref|YP_004596177.1| - 6e-07 29.7 0.0 0.0069 16.7 0.0 2.5 2 0 0 2 2 2 2 Transcriptional regulator HTH_IclR PF09339.10 gi|336253070|ref|YP_004596177.1| - 1.2e-06 28.2 1.5 0.024 14.4 0.1 3.1 3 1 0 3 3 2 2 IclR helix-turn-helix domain Fe_dep_repress PF01325.19 gi|336253070|ref|YP_004596177.1| - 3.4e-06 27.1 0.0 0.00014 22.0 0.0 2.2 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain DprA_WH PF17782.1 gi|336253070|ref|YP_004596177.1| - 1.4e-05 25.1 3.0 0.00025 21.1 0.0 3.0 3 1 0 3 3 2 1 DprA winged helix domain HTH_27 PF13463.6 gi|336253070|ref|YP_004596177.1| - 2.6e-05 24.6 0.3 0.00066 20.1 0.1 2.4 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_11 PF08279.12 gi|336253070|ref|YP_004596177.1| - 3.5e-05 23.7 0.0 8.9e-05 22.4 0.0 1.7 1 0 0 1 1 1 1 HTH domain DUF742 PF05331.11 gi|336253070|ref|YP_004596177.1| - 4.7e-05 23.2 0.0 0.11 12.3 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF742) PadR PF03551.14 gi|336253070|ref|YP_004596177.1| - 5.9e-05 22.9 0.4 0.0024 17.8 0.0 3.3 3 1 0 3 3 3 1 Transcriptional regulator PadR-like family GntR PF00392.21 gi|336253070|ref|YP_004596177.1| - 0.0002 21.0 0.2 0.26 11.0 0.0 2.9 2 1 0 2 2 2 1 Bacterial regulatory proteins, gntR family DUF2250 PF10007.9 gi|336253070|ref|YP_004596177.1| - 0.00041 20.4 0.1 0.1 12.7 0.0 2.4 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_10 PF04967.12 gi|336253070|ref|YP_004596177.1| - 0.0015 18.3 0.0 0.0052 16.6 0.0 1.9 1 0 0 1 1 1 1 HTH DNA binding domain LexA_DNA_bind PF01726.16 gi|336253070|ref|YP_004596177.1| - 0.0016 18.2 0.0 0.012 15.4 0.0 2.3 2 0 0 2 2 2 1 LexA DNA binding domain HTH_CodY PF08222.11 gi|336253070|ref|YP_004596177.1| - 0.0016 17.9 0.0 0.0038 16.7 0.0 1.6 1 0 0 1 1 1 1 CodY helix-turn-helix domain HxlR PF01638.17 gi|336253070|ref|YP_004596177.1| - 0.0029 17.4 0.0 0.065 13.1 0.0 2.3 2 0 0 2 2 2 1 HxlR-like helix-turn-helix DDRGK PF09756.9 gi|336253070|ref|YP_004596177.1| - 0.0049 16.5 0.0 0.011 15.4 0.0 1.5 2 0 0 2 2 1 1 DDRGK domain HTH_AsnC-type PF13404.6 gi|336253070|ref|YP_004596177.1| - 0.005 16.6 0.2 0.036 13.9 0.2 2.5 1 1 0 1 1 1 1 AsnC-type helix-turn-helix domain FeoC PF09012.10 gi|336253070|ref|YP_004596177.1| - 0.0051 16.8 0.0 0.82 9.8 0.0 2.5 2 0 0 2 2 2 1 FeoC like transcriptional regulator IF2_N PF04760.15 gi|336253070|ref|YP_004596177.1| - 0.0055 16.5 0.0 0.49 10.3 0.0 2.6 2 0 0 2 2 2 1 Translation initiation factor IF-2, N-terminal region HTH_1 PF00126.27 gi|336253070|ref|YP_004596177.1| - 0.014 15.3 2.0 2.2 8.3 0.0 2.7 3 0 0 3 3 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_36 PF13730.6 gi|336253070|ref|YP_004596177.1| - 0.016 15.1 0.0 0.033 14.1 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2513 PF10711.9 gi|336253070|ref|YP_004596177.1| - 0.017 15.4 0.2 0.1 12.9 0.0 2.2 2 0 0 2 2 2 0 Hypothetical protein (DUF2513) Cdc6_C PF09079.11 gi|336253070|ref|YP_004596177.1| - 0.019 14.9 0.0 0.48 10.4 0.0 2.5 2 0 0 2 2 2 0 CDC6, C terminal winged helix domain SMC_ScpB PF04079.16 gi|336253070|ref|YP_004596177.1| - 0.027 14.1 0.1 3.2 7.4 0.0 2.3 2 0 0 2 2 2 0 Segregation and condensation complex subunit ScpB HTH_45 PF14947.6 gi|336253070|ref|YP_004596177.1| - 0.039 13.9 0.0 4.4 7.4 0.0 2.4 2 0 0 2 2 2 0 Winged helix-turn-helix ArsR PF09824.9 gi|336253070|ref|YP_004596177.1| - 0.055 13.1 0.0 0.3 10.7 0.0 2.1 2 1 0 2 2 2 0 ArsR transcriptional regulator RP-C PF03428.13 gi|336253070|ref|YP_004596177.1| - 0.06 13.0 0.0 0.25 11.0 0.0 2.0 2 0 0 2 2 2 0 Replication protein C N-terminal domain HTH_DeoR PF08220.12 gi|336253070|ref|YP_004596177.1| - 0.065 13.0 0.0 0.21 11.4 0.0 1.9 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain GPP34 PF05719.11 gi|336253070|ref|YP_004596177.1| - 0.075 13.1 0.8 0.19 11.8 0.2 2.0 1 1 1 2 2 2 0 Golgi phosphoprotein 3 (GPP34) HTH_38 PF13936.6 gi|336253070|ref|YP_004596177.1| - 0.077 12.8 0.1 0.23 11.2 0.1 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_34 PF13601.6 gi|336253070|ref|YP_004596177.1| - 0.082 13.1 0.0 0.39 10.9 0.0 1.9 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_47 PF16221.5 gi|336253070|ref|YP_004596177.1| - 0.11 12.1 0.0 4.5 6.9 0.0 2.4 2 0 0 2 2 2 0 winged helix-turn-helix FaeA PF04703.12 gi|336253070|ref|YP_004596177.1| - 0.16 12.4 0.1 0.41 11.1 0.0 1.7 2 0 0 2 2 1 0 FaeA-like protein TetR_C_11 PF16859.5 gi|336253070|ref|YP_004596177.1| - 0.16 12.3 1.5 0.2 12.0 0.1 1.8 2 0 0 2 2 1 0 Tetracyclin repressor-like, C-terminal domain BLACT_WH PF17778.1 gi|336253070|ref|YP_004596177.1| - 0.37 10.8 7.6 0.51 10.4 0.3 3.0 4 0 0 4 4 2 0 Beta-lactamase associated winged helix domain DUF2062 PF09835.9 gi|336253071|ref|YP_004596178.1| - 0.039 13.8 2.7 0.29 11.0 0.1 2.2 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2062) DUF456 PF04306.13 gi|336253071|ref|YP_004596178.1| - 0.49 10.7 16.0 0.26 11.6 12.8 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF456) DUF202 PF02656.15 gi|336253072|ref|YP_004596179.1| - 0.87 10.1 6.6 2.3 8.7 6.6 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF202) Asparaginase PF00710.20 gi|336253073|ref|YP_004596180.1| - 4.3e-59 199.3 0.2 1.3e-58 197.8 0.2 1.7 2 0 0 2 2 2 1 Asparaginase, N-terminal Asparaginase_C PF17763.1 gi|336253073|ref|YP_004596180.1| - 1.7e-26 92.7 0.0 1.2e-25 89.9 0.0 2.1 2 0 0 2 2 2 1 Glutaminase/Asparaginase C-terminal domain GatD_N PF18195.1 gi|336253073|ref|YP_004596180.1| - 1e-17 63.2 0.0 1.8e-17 62.4 0.0 1.4 1 0 0 1 1 1 1 GatD N-terminal domain Acetyltransf_1 PF00583.25 gi|336253074|ref|YP_004596181.1| - 4.4e-10 39.8 0.6 5.4e-09 36.3 0.1 2.3 2 1 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_9 PF13527.7 gi|336253074|ref|YP_004596181.1| - 5.3e-05 23.3 0.4 0.11 12.6 0.0 2.9 3 0 0 3 3 3 2 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|336253074|ref|YP_004596181.1| - 0.00025 21.1 0.1 0.00064 19.8 0.1 1.7 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase PknH_C PF14032.6 gi|336253074|ref|YP_004596181.1| - 0.00059 19.7 1.4 0.0012 18.8 1.4 1.5 1 0 0 1 1 1 1 PknH-like extracellular domain Acetyltransf_7 PF13508.7 gi|336253074|ref|YP_004596181.1| - 0.00092 19.6 0.0 0.002 18.5 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|336253074|ref|YP_004596181.1| - 0.0023 18.6 0.6 0.0023 18.6 0.6 2.4 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|336253074|ref|YP_004596181.1| - 0.0024 17.8 0.0 0.013 15.4 0.0 2.1 3 0 0 3 3 3 1 Acetyltransferase (GNAT) domain PanZ PF12568.8 gi|336253074|ref|YP_004596181.1| - 0.014 15.1 0.0 0.03 14.1 0.0 1.5 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain, PanZ FoP_duplication PF13865.6 gi|336253074|ref|YP_004596181.1| - 0.04 14.5 0.1 0.097 13.2 0.1 1.7 1 1 0 1 1 1 0 C-terminal duplication domain of Friend of PRMT1 DUF883 PF05957.13 gi|336253074|ref|YP_004596181.1| - 0.083 13.5 0.0 0.26 11.9 0.0 1.8 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF883) Acetyltransf_4 PF13420.7 gi|336253074|ref|YP_004596181.1| - 0.16 12.1 0.0 1.6 8.8 0.0 2.0 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain ThiS PF02597.20 gi|336253075|ref|YP_004596182.1| - 3.2e-19 69.3 0.5 3.6e-19 69.2 0.5 1.0 1 0 0 1 1 1 1 ThiS family Flagellin_IN PF07196.13 gi|336253075|ref|YP_004596182.1| - 0.027 14.6 1.6 0.54 10.5 0.4 2.1 2 0 0 2 2 2 0 Flagellin hook IN motif TrkA_C PF02080.21 gi|336253076|ref|YP_004596183.1| - 1.3e-06 28.2 0.5 1.9e-05 24.4 0.1 2.5 2 0 0 2 2 2 1 TrkA-C domain PDZ_6 PF17820.1 gi|336253076|ref|YP_004596183.1| - 0.071 13.0 0.1 0.84 9.5 0.1 2.5 2 0 0 2 2 2 0 PDZ domain TrkA_C PF02080.21 gi|336253077|ref|YP_004596184.1| - 0.0049 16.7 0.3 0.038 13.8 0.1 2.5 2 0 0 2 2 2 1 TrkA-C domain 5TM-5TMR_LYT PF07694.12 gi|336253077|ref|YP_004596184.1| - 0.079 12.5 9.3 0.13 11.8 9.3 1.2 1 0 0 1 1 1 0 5TMR of 5TMR-LYT TrkA_N PF02254.18 gi|336253078|ref|YP_004596185.1| - 1.9e-26 92.6 0.9 3.1e-26 91.9 0.9 1.3 1 0 0 1 1 1 1 TrkA-N domain Ion_trans_2 PF07885.16 gi|336253078|ref|YP_004596185.1| - 1.1e-12 47.8 3.7 1.1e-12 47.8 3.7 2.4 2 0 0 2 2 2 1 Ion channel Ion_trans PF00520.31 gi|336253078|ref|YP_004596185.1| - 0.00012 21.4 0.4 0.0002 20.7 0.4 1.4 1 0 0 1 1 1 1 Ion transport protein IRK PF01007.20 gi|336253078|ref|YP_004596185.1| - 0.013 15.3 0.1 0.024 14.4 0.1 1.3 1 0 0 1 1 1 0 Inward rectifier potassium channel transmembrane domain NTP_transf_3 PF12804.7 gi|336253078|ref|YP_004596185.1| - 0.048 14.0 0.8 0.12 12.7 0.8 1.6 1 0 0 1 1 1 0 MobA-like NTP transferase domain HPP PF04982.13 gi|336253079|ref|YP_004596186.1| - 3.7e-17 62.6 3.6 7.2e-17 61.7 3.6 1.5 1 0 0 1 1 1 1 HPP family Usp PF00582.26 gi|336253079|ref|YP_004596186.1| - 6.9e-06 26.6 0.5 0.00072 20.1 0.1 2.8 3 0 0 3 3 3 2 Universal stress protein family HalOD1 PF18545.1 gi|336253080|ref|YP_004596187.1| - 2.6e-16 59.6 0.4 3.1e-16 59.4 0.4 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 TrmB PF01978.19 gi|336253081|ref|YP_004596188.1| - 7.3e-20 70.6 0.2 3e-19 68.7 0.0 2.2 3 0 0 3 3 3 1 Sugar-specific transcriptional regulator TrmB Regulator_TrmB PF11495.8 gi|336253081|ref|YP_004596188.1| - 9e-05 21.8 0.1 0.00012 21.4 0.1 1.2 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB HTH_20 PF12840.7 gi|336253081|ref|YP_004596188.1| - 0.002 18.2 1.1 0.015 15.4 0.1 2.9 3 1 0 3 3 3 1 Helix-turn-helix domain E2F_TDP PF02319.20 gi|336253081|ref|YP_004596188.1| - 0.0023 17.9 0.0 0.0055 16.7 0.0 1.7 1 1 0 1 1 1 1 E2F/DP family winged-helix DNA-binding domain MarR_2 PF12802.7 gi|336253081|ref|YP_004596188.1| - 0.0032 17.3 0.5 0.035 14.0 0.1 2.6 3 0 0 3 3 3 1 MarR family HTH_IclR PF09339.10 gi|336253081|ref|YP_004596188.1| - 0.019 14.8 0.2 0.053 13.3 0.1 2.0 2 0 0 2 2 2 0 IclR helix-turn-helix domain Cdc6_C PF09079.11 gi|336253081|ref|YP_004596188.1| - 0.065 13.2 0.0 0.19 11.7 0.0 1.8 1 0 0 1 1 1 0 CDC6, C terminal winged helix domain PadR PF03551.14 gi|336253081|ref|YP_004596188.1| - 0.11 12.5 0.0 0.47 10.4 0.0 2.1 2 0 0 2 2 2 0 Transcriptional regulator PadR-like family HTH_20 PF12840.7 gi|336253082|ref|YP_004596189.1| - 0.0036 17.3 0.2 0.013 15.5 0.2 1.9 1 1 0 1 1 1 1 Helix-turn-helix domain DeoC PF01791.9 gi|336253083|ref|YP_004596190.1| - 5.8e-09 35.9 1.3 7.7e-09 35.5 1.3 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase CRA_rpt PF07046.11 gi|336253083|ref|YP_004596190.1| - 0.019 15.1 2.9 0.048 13.8 2.9 1.6 1 0 0 1 1 1 0 Cytoplasmic repetitive antigen (CRA) like repeat IF-2B PF01008.17 gi|336253084|ref|YP_004596191.1| - 3.3e-75 252.9 0.1 3.8e-75 252.7 0.1 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family PEP-utilizers PF00391.23 gi|336253084|ref|YP_004596191.1| - 0.01 15.5 0.6 2.2 8.1 0.3 3.5 2 1 1 3 3 3 0 PEP-utilising enzyme, mobile domain DUF2849 PF11011.8 gi|336253084|ref|YP_004596191.1| - 0.019 15.6 7.4 5 7.9 3.6 3.3 3 0 0 3 3 3 0 Protein of unknown function (DUF2849) PRP4 PF08799.11 gi|336253084|ref|YP_004596191.1| - 0.16 11.5 2.3 0.82 9.3 0.1 3.0 3 0 0 3 3 3 0 pre-mRNA processing factor 4 (PRP4) like BtrH_N PF14399.6 gi|336253084|ref|YP_004596191.1| - 0.2 11.9 0.3 3.1 8.0 0.0 2.5 3 0 0 3 3 3 0 Butirosin biosynthesis protein H, N-terminal DUF63 PF01889.17 gi|336253085|ref|YP_004596192.1| - 2.2e-17 64.2 8.5 2.8e-17 63.8 8.5 1.1 1 0 0 1 1 1 1 Membrane protein of unknown function DUF63 Phage_Coat_Gp8 PF05371.12 gi|336253085|ref|YP_004596192.1| - 0.21 11.4 0.2 0.21 11.4 0.2 2.9 3 0 0 3 3 3 0 Phage major coat protein, Gp8 PfkB PF00294.24 gi|336253086|ref|YP_004596193.1| - 9.9e-50 169.5 4.8 1.3e-49 169.2 4.8 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase HalOD1 PF18545.1 gi|336253087|ref|YP_004596194.1| - 2.1e-20 72.7 2.2 2.8e-20 72.4 2.2 1.2 1 0 0 1 1 1 1 Halobacterial output domain 1 PNP_UDP_1 PF01048.20 gi|336253088|ref|YP_004596195.1| - 1.9e-47 161.5 2.4 2.3e-47 161.2 2.4 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily Fzo_mitofusin PF04799.13 gi|336253089|ref|YP_004596196.1| - 0.0046 16.5 1.8 0.0046 16.5 1.8 1.1 1 0 0 1 1 1 1 fzo-like conserved region DZR PF12773.7 gi|336253091|ref|YP_004596198.1| - 0.0013 18.7 2.6 0.21 11.6 0.3 2.4 2 1 0 2 2 2 2 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|336253091|ref|YP_004596198.1| - 0.064 12.7 3.1 0.92 9.0 0.0 3.1 3 0 0 3 3 3 0 zinc-ribbon domain zf-C3HC4_3 PF13920.6 gi|336253091|ref|YP_004596198.1| - 0.55 10.1 6.4 0.32 10.9 0.6 2.7 3 0 0 3 3 3 0 Zinc finger, C3HC4 type (RING finger) RecR PF02132.15 gi|336253091|ref|YP_004596198.1| - 4.9 6.8 10.9 3.4 7.3 3.9 3.3 3 0 0 3 3 3 0 RecR protein Prok-RING_4 PF14447.6 gi|336253091|ref|YP_004596198.1| - 8.8 6.3 8.3 1.6 8.7 0.7 2.5 3 0 0 3 3 3 0 Prokaryotic RING finger family 4 DUF1508 PF07411.12 gi|336253092|ref|YP_004596199.1| - 2.1e-18 65.9 0.1 3.4e-18 65.2 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1508) DUF547 PF04784.14 gi|336253093|ref|YP_004596200.1| - 3.5e-23 82.0 0.0 4.6e-23 81.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF547 AI-2E_transport PF01594.16 gi|336253094|ref|YP_004596201.1| - 2.3e-48 165.0 28.1 2.9e-48 164.7 28.1 1.0 1 0 0 1 1 1 1 AI-2E family transporter CrgA PF06781.12 gi|336253094|ref|YP_004596201.1| - 1.3 9.1 0.0 1.3 9.1 0.0 3.1 3 0 0 3 3 3 0 Cell division protein CrgA SUR7 PF06687.12 gi|336253094|ref|YP_004596201.1| - 9.1 5.8 12.6 3.4 7.3 0.8 2.5 1 1 1 2 2 2 0 SUR7/PalI family DUF4350 PF14258.6 gi|336253095|ref|YP_004596202.1| - 0.00014 22.2 3.2 0.003 18.0 0.2 2.6 2 1 0 2 2 2 2 Domain of unknown function (DUF4350) ABC_transp_aux PF09822.9 gi|336253095|ref|YP_004596202.1| - 0.017 14.6 0.0 0.028 13.9 0.0 1.6 1 1 0 1 1 1 0 ABC-type uncharacterized transport system Peptidase_S49 PF01343.18 gi|336253096|ref|YP_004596203.1| - 1.2e-17 64.3 1.0 3e-10 40.2 0.4 2.3 2 0 0 2 2 2 2 Peptidase family S49 CLP_protease PF00574.23 gi|336253096|ref|YP_004596203.1| - 1.8e-07 31.2 0.4 1e-05 25.5 0.4 2.3 1 1 0 1 1 1 1 Clp protease ECH_1 PF00378.20 gi|336253096|ref|YP_004596203.1| - 0.038 13.3 0.1 6 6.1 0.0 2.4 2 0 0 2 2 2 0 Enoyl-CoA hydratase/isomerase OKR_DC_1_N PF03709.15 gi|336253096|ref|YP_004596203.1| - 0.052 13.8 0.0 0.11 12.8 0.0 1.5 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain DUF2884 PF11101.8 gi|336253096|ref|YP_004596203.1| - 0.14 11.7 0.2 0.23 10.9 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2884) Radical_SAM PF04055.21 gi|336253097|ref|YP_004596204.1| - 7.8e-17 62.2 0.6 1.7e-16 61.0 0.2 1.9 2 0 0 2 2 2 1 Radical SAM superfamily MCPsignal PF00015.21 gi|336253098|ref|YP_004596205.1| - 3.5e-40 137.6 56.1 2.5e-39 134.8 24.3 5.3 2 1 4 6 6 6 3 Methyl-accepting chemotaxis protein (MCP) signalling domain dCache_1 PF02743.18 gi|336253098|ref|YP_004596205.1| - 6.5e-07 29.4 2.4 6.5e-07 29.4 2.4 3.2 3 2 1 4 4 2 1 Cache domain Laminin_II PF06009.12 gi|336253098|ref|YP_004596205.1| - 3.8e-06 27.0 31.2 0.0018 18.3 2.8 5.3 3 2 2 5 5 5 2 Laminin Domain II DUF948 PF06103.11 gi|336253098|ref|YP_004596205.1| - 3.6e-05 23.9 36.4 0.022 15.0 2.6 6.7 2 2 2 4 4 4 1 Bacterial protein of unknown function (DUF948) Med30 PF11315.8 gi|336253098|ref|YP_004596205.1| - 0.00079 19.6 10.6 0.13 12.5 0.2 3.5 3 1 0 3 3 3 1 Mediator complex subunit 30 CENP-F_leu_zip PF10473.9 gi|336253098|ref|YP_004596205.1| - 0.0018 18.3 4.7 0.0018 18.3 4.7 4.9 2 2 2 4 4 4 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 RPW8 PF05659.11 gi|336253098|ref|YP_004596205.1| - 0.0018 17.9 10.6 0.61 9.8 0.0 5.2 3 2 2 5 5 5 1 Arabidopsis broad-spectrum mildew resistance protein RPW8 DUF1664 PF07889.12 gi|336253098|ref|YP_004596205.1| - 0.0022 18.0 28.6 0.48 10.5 1.7 5.5 3 2 2 5 5 5 3 Protein of unknown function (DUF1664) CALCOCO1 PF07888.11 gi|336253098|ref|YP_004596205.1| - 0.0033 16.4 17.9 0.0033 16.4 17.9 2.9 1 1 2 3 3 3 1 Calcium binding and coiled-coil domain (CALCOCO1) like Laminin_I PF06008.14 gi|336253098|ref|YP_004596205.1| - 0.0046 16.7 27.7 0.34 10.6 0.2 4.6 3 2 1 4 4 4 2 Laminin Domain I HAMP PF00672.25 gi|336253098|ref|YP_004596205.1| - 0.0082 16.5 0.8 0.0082 16.5 0.8 6.4 6 2 1 7 7 4 2 HAMP domain NPV_P10 PF05531.12 gi|336253098|ref|YP_004596205.1| - 0.0096 16.4 24.8 0.041 14.3 2.1 5.9 3 2 1 4 4 4 1 Nucleopolyhedrovirus P10 protein Spc7 PF08317.11 gi|336253098|ref|YP_004596205.1| - 0.01 14.7 33.3 0.12 11.3 7.6 3.4 2 1 1 3 3 3 0 Spc7 kinetochore protein YabA PF06156.13 gi|336253098|ref|YP_004596205.1| - 0.022 15.4 16.7 3.3 8.4 0.1 5.4 3 2 3 6 6 6 0 Initiation control protein YabA Sec34 PF04136.15 gi|336253098|ref|YP_004596205.1| - 0.026 14.4 14.4 1.2 9.0 0.5 5.2 3 2 4 7 7 7 0 Sec34-like family AAA_13 PF13166.6 gi|336253098|ref|YP_004596205.1| - 0.038 12.7 30.5 0.15 10.7 11.3 2.3 1 1 1 2 2 2 0 AAA domain PI3K_P85_iSH2 PF16454.5 gi|336253098|ref|YP_004596205.1| - 0.047 13.3 8.5 0.22 11.1 0.6 3.2 3 0 0 3 3 3 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain TSNAXIP1_N PF15739.5 gi|336253098|ref|YP_004596205.1| - 0.059 13.8 0.5 0.059 13.8 0.5 4.9 4 1 0 5 5 5 0 Translin-associated factor X-interacting N-terminus Antimicrobial24 PF16049.5 gi|336253098|ref|YP_004596205.1| - 0.083 12.9 2.0 0.16 12.0 2.0 1.5 1 0 0 1 1 1 0 Frog antimicrobial peptide Rootletin PF15035.6 gi|336253098|ref|YP_004596205.1| - 0.087 12.8 0.0 0.087 12.8 0.0 4.1 1 1 1 3 3 2 0 Ciliary rootlet component, centrosome cohesion Ran-binding PF05508.11 gi|336253098|ref|YP_004596205.1| - 0.12 11.3 16.3 1.1 8.2 1.7 3.5 2 1 0 3 3 3 0 RanGTP-binding protein DUF2913 PF11140.8 gi|336253098|ref|YP_004596205.1| - 0.12 12.1 2.4 0.17 11.6 0.2 2.4 2 0 0 2 2 1 0 Protein of unknown function (DUF2913) DASH_Duo1 PF08651.10 gi|336253098|ref|YP_004596205.1| - 0.16 11.8 7.7 24 4.8 0.0 5.6 5 1 1 6 6 6 0 DASH complex subunit Duo1 HMMR_N PF15905.5 gi|336253098|ref|YP_004596205.1| - 0.17 11.3 28.9 1.2 8.5 2.7 4.3 2 2 3 5 5 5 0 Hyaluronan mediated motility receptor N-terminal BLOC1_2 PF10046.9 gi|336253098|ref|YP_004596205.1| - 0.23 11.8 32.9 0.049 13.9 2.0 6.7 3 3 4 7 7 7 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 bZIP_1 PF00170.21 gi|336253098|ref|YP_004596205.1| - 0.43 10.7 0.1 0.43 10.7 0.1 3.5 4 0 0 4 4 2 0 bZIP transcription factor DUF4200 PF13863.6 gi|336253098|ref|YP_004596205.1| - 0.45 10.9 27.9 0.028 14.8 3.5 4.0 3 1 1 4 4 3 0 Domain of unknown function (DUF4200) DUF2203 PF09969.9 gi|336253098|ref|YP_004596205.1| - 0.46 11.2 30.1 2.6 8.8 1.6 5.6 2 1 3 5 5 5 0 Uncharacterized conserved protein (DUF2203) TPR_MLP1_2 PF07926.12 gi|336253098|ref|YP_004596205.1| - 0.65 10.1 40.8 0.75 9.9 3.6 4.8 3 1 1 4 4 4 0 TPR/MLP1/MLP2-like protein DASH_Dam1 PF08653.10 gi|336253098|ref|YP_004596205.1| - 0.86 9.4 4.7 28 4.6 0.4 4.1 5 0 0 5 5 3 0 DASH complex subunit Dam1 Baculo_PEP_C PF04513.12 gi|336253098|ref|YP_004596205.1| - 1.3 9.0 18.6 2.2 8.3 0.4 5.0 2 2 3 5 5 5 0 Baculovirus polyhedron envelope protein, PEP, C terminus AIP3 PF03915.13 gi|336253098|ref|YP_004596205.1| - 1.4 7.9 23.7 3.7 6.5 10.4 3.1 1 1 1 2 2 2 0 Actin interacting protein 3 Mce4_CUP1 PF11887.8 gi|336253098|ref|YP_004596205.1| - 1.6 8.1 20.1 0.51 9.7 2.2 3.6 1 1 2 4 4 4 0 Cholesterol uptake porter CUP1 of Mce4, putative TMPIT PF07851.13 gi|336253098|ref|YP_004596205.1| - 1.7 7.8 15.0 0.41 9.8 0.3 4.1 2 2 2 5 5 5 0 TMPIT-like protein Spectrin PF00435.21 gi|336253098|ref|YP_004596205.1| - 1.9 9.0 23.8 0.59 10.6 1.4 5.9 3 2 4 7 7 7 0 Spectrin repeat ApoLp-III PF07464.11 gi|336253098|ref|YP_004596205.1| - 1.9 8.6 31.2 0.18 11.9 0.8 4.4 3 2 1 4 4 4 0 Apolipophorin-III precursor (apoLp-III) Fib_alpha PF08702.10 gi|336253098|ref|YP_004596205.1| - 2.1 8.5 16.4 4.8 7.4 1.4 4.8 2 2 3 5 5 5 0 Fibrinogen alpha/beta chain family Dor1 PF04124.12 gi|336253098|ref|YP_004596205.1| - 3.1 6.4 14.8 3.7 6.1 1.4 3.7 2 1 1 3 3 3 0 Dor1-like family Occludin_ELL PF07303.13 gi|336253098|ref|YP_004596205.1| - 3.1 8.6 6.2 6.6 7.5 0.0 4.2 3 2 1 5 5 3 0 Occludin homology domain Mod_r PF07200.13 gi|336253098|ref|YP_004596205.1| - 3.3 7.8 20.6 1.9 8.6 1.4 4.4 1 1 1 3 3 3 0 Modifier of rudimentary (Mod(r)) protein Seryl_tRNA_N PF02403.22 gi|336253098|ref|YP_004596205.1| - 4.7 7.5 30.6 1.7 8.9 1.4 5.5 3 2 3 6 6 6 0 Seryl-tRNA synthetase N-terminal domain Syntaxin PF00804.25 gi|336253098|ref|YP_004596205.1| - 4.8 6.8 22.5 2.5 7.7 1.7 4.9 2 2 2 5 5 5 0 Syntaxin Fzo_mitofusin PF04799.13 gi|336253098|ref|YP_004596205.1| - 6.2 6.3 17.5 14 5.2 0.1 5.1 3 2 0 5 5 5 0 fzo-like conserved region DUF812 PF05667.11 gi|336253098|ref|YP_004596205.1| - 6.5 5.5 30.6 1.2 7.9 3.8 3.4 1 1 2 3 3 3 0 Protein of unknown function (DUF812) SAICAR_synt PF01259.18 gi|336253099|ref|YP_004596206.1| - 8.9e-25 87.7 0.0 4.3e-24 85.5 0.0 1.8 1 1 0 1 1 1 1 SAICAR synthetase DUF4110 PF13422.6 gi|336253099|ref|YP_004596206.1| - 0.031 14.4 0.0 0.066 13.3 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4110) SPW PF03779.14 gi|336253100|ref|YP_004596207.1| - 0.00013 21.4 8.0 0.00013 21.4 8.0 3.3 3 2 0 3 3 3 1 SPW repeat Trp_oprn_chp PF09534.10 gi|336253100|ref|YP_004596207.1| - 3.1 7.5 25.0 1.1 9.0 7.2 2.8 1 1 2 3 3 3 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) Fumarate_red_C PF02300.17 gi|336253100|ref|YP_004596207.1| - 5.4 7.1 7.5 12 6.0 0.5 3.0 2 2 0 2 2 2 0 Fumarate reductase subunit C DUF2267 PF10025.9 gi|336253101|ref|YP_004596208.1| - 1.7e-29 102.6 1.2 1.9e-29 102.4 1.2 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2267) DUF2116 PF09889.9 gi|336253102|ref|YP_004596209.1| - 0.016 15.1 0.8 1.4 9.0 0.1 2.1 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) YHS PF04945.13 gi|336253102|ref|YP_004596209.1| - 0.11 12.6 3.0 0.32 11.1 1.8 2.1 1 1 0 1 1 1 0 YHS domain Formyl_trans_N PF00551.19 gi|336253104|ref|YP_004596211.1| - 1.2e-43 148.9 0.0 1.8e-43 148.4 0.0 1.2 1 0 0 1 1 1 1 Formyl transferase ACT_6 PF13740.6 gi|336253104|ref|YP_004596211.1| - 2.5e-09 37.0 0.2 5.1e-09 36.0 0.2 1.5 1 0 0 1 1 1 1 ACT domain ACT PF01842.25 gi|336253104|ref|YP_004596211.1| - 1.6e-05 24.6 0.1 7.9e-05 22.3 0.1 2.2 2 0 0 2 2 2 1 ACT domain ACT_4 PF13291.6 gi|336253104|ref|YP_004596211.1| - 9.4e-05 22.9 0.1 0.00025 21.6 0.1 1.7 1 0 0 1 1 1 1 ACT domain HalOD1 PF18545.1 gi|336253105|ref|YP_004596212.1| - 1.7e-22 79.5 0.5 2.2e-22 79.1 0.5 1.2 1 0 0 1 1 1 1 Halobacterial output domain 1 AbiJ_NTD5 PF18865.1 gi|336253105|ref|YP_004596212.1| - 0.096 12.5 0.0 0.13 12.1 0.0 1.2 1 0 0 1 1 1 0 AbiJ N-terminal domain 5 SHOCT PF09851.9 gi|336253106|ref|YP_004596213.1| - 7.8e-08 31.8 2.0 1.6e-07 30.9 2.0 1.5 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.11 gi|336253106|ref|YP_004596213.1| - 1.2e-06 28.5 3.2 2.5e-06 27.4 3.2 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1707) PurS PF02700.14 gi|336253107|ref|YP_004596214.1| - 1.7e-26 92.2 0.0 1.9e-26 92.1 0.0 1.0 1 0 0 1 1 1 1 Phosphoribosylformylglycinamidine (FGAM) synthase DUF2184 PF09950.9 gi|336253107|ref|YP_004596214.1| - 0.033 13.6 0.0 0.035 13.5 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2184) SIMPL PF04402.14 gi|336253107|ref|YP_004596214.1| - 0.092 13.2 0.6 0.1 13.1 0.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF541) GATase_5 PF13507.6 gi|336253108|ref|YP_004596215.1| - 1.3e-42 145.7 0.0 1.6e-42 145.4 0.0 1.1 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.28 gi|336253108|ref|YP_004596215.1| - 8.6e-08 32.2 0.0 1.1e-07 31.8 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.14 gi|336253108|ref|YP_004596215.1| - 6.7e-05 22.6 0.0 0.00011 21.9 0.0 1.4 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.24 gi|336253108|ref|YP_004596215.1| - 0.0002 21.2 0.0 0.00028 20.8 0.0 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family Peptidase_C26 PF07722.13 gi|336253108|ref|YP_004596215.1| - 0.1 12.3 0.1 0.17 11.6 0.1 1.2 1 0 0 1 1 1 0 Peptidase C26 PAS PF00989.25 gi|336253109|ref|YP_004596216.1| - 3.3e-21 75.4 0.1 1e-13 51.2 0.1 2.7 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|336253109|ref|YP_004596216.1| - 1e-19 70.7 0.0 2.9e-12 46.8 0.0 2.7 2 0 0 2 2 2 2 PAS domain GAF_2 PF13185.6 gi|336253109|ref|YP_004596216.1| - 4.7e-18 65.8 12.0 8.9e-12 45.5 0.7 3.1 3 0 0 3 3 2 2 GAF domain PAS_8 PF13188.7 gi|336253109|ref|YP_004596216.1| - 1.4e-16 60.0 0.0 1.9e-07 31.0 0.0 3.0 2 0 0 2 2 2 2 PAS domain PAS_4 PF08448.10 gi|336253109|ref|YP_004596216.1| - 1.4e-13 51.0 8.4 3.5e-08 33.7 0.4 4.6 4 1 0 4 4 4 2 PAS fold HATPase_c PF02518.26 gi|336253109|ref|YP_004596216.1| - 1.6e-11 44.7 0.0 3.3e-11 43.7 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF PF01590.26 gi|336253109|ref|YP_004596216.1| - 2e-10 41.4 1.7 1.7e-07 32.0 0.1 3.1 2 0 0 2 2 2 2 GAF domain PAS_3 PF08447.12 gi|336253109|ref|YP_004596216.1| - 5.5e-10 39.4 0.0 9.3e-06 25.9 0.0 2.6 2 0 0 2 2 2 2 PAS fold GAF_3 PF13492.6 gi|336253109|ref|YP_004596216.1| - 2e-06 28.1 1.4 5.9e-06 26.7 0.3 2.4 3 0 0 3 3 3 1 GAF domain HisKA_4TM PF16926.5 gi|336253109|ref|YP_004596216.1| - 0.00018 21.2 0.0 0.00046 19.8 0.0 1.7 1 0 0 1 1 1 1 Archaeal 4TM region of histidine kinase PAS_7 PF12860.7 gi|336253109|ref|YP_004596216.1| - 0.00044 20.4 0.9 0.18 12.0 0.1 4.1 3 0 0 3 3 3 1 PAS fold Response_reg PF00072.24 gi|336253109|ref|YP_004596216.1| - 0.0054 16.9 0.0 0.021 15.0 0.0 2.0 1 0 0 1 1 1 1 Response regulator receiver domain MEKHLA PF08670.11 gi|336253109|ref|YP_004596216.1| - 0.14 12.0 0.0 0.8 9.6 0.0 2.2 3 0 0 3 3 3 0 MEKHLA domain HisKA PF00512.25 gi|336253109|ref|YP_004596216.1| - 0.58 10.2 6.3 0.077 13.0 0.5 2.6 3 0 0 3 3 3 0 His Kinase A (phospho-acceptor) domain YqaH PF17448.2 gi|336253109|ref|YP_004596216.1| - 2.2 8.6 4.8 2 8.8 0.1 3.2 3 1 0 3 3 3 0 Uncharacterized YqaH-like Radical_SAM PF04055.21 gi|336253110|ref|YP_004596217.1| - 0.0044 17.4 0.1 0.0082 16.5 0.1 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Zn-ribbon_8 PF09723.10 gi|336253111|ref|YP_004596218.1| - 0.00021 21.4 0.7 0.39 10.9 0.1 2.2 2 0 0 2 2 2 2 Zinc ribbon domain RNA_POL_M_15KD PF02150.16 gi|336253111|ref|YP_004596218.1| - 0.00041 20.2 0.6 0.09 12.7 0.1 2.2 2 0 0 2 2 2 2 RNA polymerases M/15 Kd subunit TF_Zn_Ribbon PF08271.12 gi|336253111|ref|YP_004596218.1| - 0.0017 17.8 0.5 1.6 8.3 0.1 2.1 2 0 0 2 2 2 2 TFIIB zinc-binding Nudix_N_2 PF14803.6 gi|336253111|ref|YP_004596218.1| - 0.0078 16.1 3.1 0.071 13.0 3.1 2.1 1 1 0 1 1 1 1 Nudix N-terminal TackOD1 PF18551.1 gi|336253111|ref|YP_004596218.1| - 0.0099 15.6 0.6 0.11 12.1 0.6 1.9 1 1 0 1 1 1 1 Thaumarchaeal output domain 1 A2L_zn_ribbon PF08792.10 gi|336253111|ref|YP_004596218.1| - 0.012 15.3 2.6 1.4 8.7 0.1 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain Rubredoxin PF00301.20 gi|336253111|ref|YP_004596218.1| - 0.013 15.5 3.5 0.081 13.0 3.5 2.0 1 1 0 1 1 1 0 Rubredoxin Zn_Tnp_IS1595 PF12760.7 gi|336253111|ref|YP_004596218.1| - 0.013 15.4 0.6 0.46 10.5 0.1 2.2 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|336253111|ref|YP_004596218.1| - 0.022 14.2 0.3 0.8 9.2 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain HypA PF01155.19 gi|336253111|ref|YP_004596218.1| - 0.029 14.4 0.1 0.037 14.0 0.1 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA GATA PF00320.27 gi|336253111|ref|YP_004596218.1| - 0.034 13.7 0.6 0.36 10.5 0.1 2.1 2 0 0 2 2 2 0 GATA zinc finger Rubredoxin_2 PF18073.1 gi|336253111|ref|YP_004596218.1| - 0.035 13.8 2.3 2.5 7.9 0.5 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain zinc_ribbon_10 PF10058.9 gi|336253111|ref|YP_004596218.1| - 0.054 13.2 0.5 1.6 8.5 0.1 2.1 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein zf-Mss51 PF13824.6 gi|336253111|ref|YP_004596218.1| - 0.059 13.5 0.2 5.7 7.1 0.0 2.2 2 0 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Elf1 PF05129.13 gi|336253111|ref|YP_004596218.1| - 0.065 13.3 0.8 3.8 7.6 0.0 2.1 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like OrfB_Zn_ribbon PF07282.11 gi|336253111|ref|YP_004596218.1| - 0.18 11.7 1.7 0.72 9.8 1.2 1.8 1 1 2 3 3 3 0 Putative transposase DNA-binding domain zf-RRN7 PF11781.8 gi|336253111|ref|YP_004596218.1| - 0.32 10.7 0.1 0.32 10.7 0.1 2.4 2 1 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 BAT PF15915.5 gi|336253112|ref|YP_004596219.1| - 9.6e-49 165.2 15.1 9.6e-49 165.2 15.1 3.7 3 1 0 3 3 3 1 GAF and HTH_10 associated domain PAS_9 PF13426.7 gi|336253112|ref|YP_004596219.1| - 2.1e-25 89.0 0.0 2e-23 82.6 0.1 2.7 2 0 0 2 2 2 1 PAS domain HTH_10 PF04967.12 gi|336253112|ref|YP_004596219.1| - 2.6e-19 68.7 0.0 5.6e-19 67.7 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain PAS PF00989.25 gi|336253112|ref|YP_004596219.1| - 3.7e-16 59.1 0.0 7.7e-12 45.2 0.0 2.5 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.10 gi|336253112|ref|YP_004596219.1| - 1.6e-14 54.1 2.2 3.9e-10 39.9 0.1 3.1 3 0 0 3 3 3 2 PAS fold PAS_3 PF08447.12 gi|336253112|ref|YP_004596219.1| - 4.9e-10 39.6 0.0 2.6e-09 37.3 0.0 2.3 3 0 0 3 3 3 1 PAS fold PAS_8 PF13188.7 gi|336253112|ref|YP_004596219.1| - 7.7e-08 32.2 0.0 0.00014 21.8 0.0 3.0 2 0 0 2 2 2 2 PAS domain GAF_2 PF13185.6 gi|336253112|ref|YP_004596219.1| - 0.01 16.1 1.7 0.01 16.1 1.7 3.0 3 2 0 4 4 4 0 GAF domain HTH_11 PF08279.12 gi|336253112|ref|YP_004596219.1| - 0.095 12.7 0.0 0.22 11.5 0.0 1.5 1 0 0 1 1 1 0 HTH domain GAF_3 PF13492.6 gi|336253112|ref|YP_004596219.1| - 0.1 12.9 0.1 0.27 11.6 0.1 1.8 1 0 0 1 1 1 0 GAF domain DUF1328 PF07043.13 gi|336253113|ref|YP_004596220.1| - 3.2e-11 43.2 19.9 5.4e-11 42.5 19.9 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1328) DUF2973 PF11189.8 gi|336253113|ref|YP_004596220.1| - 4 7.6 10.2 0.58 10.3 0.6 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2973) AFOR_C PF01314.18 gi|336253114|ref|YP_004596221.1| - 2.6e-118 395.4 2.1 3.1e-118 395.1 2.1 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|336253114|ref|YP_004596221.1| - 5.1e-72 241.9 0.0 7.8e-72 241.3 0.0 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain HTH_20 PF12840.7 gi|336253115|ref|YP_004596222.1| - 1.1e-10 41.4 0.9 1.6e-10 40.9 0.9 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|336253115|ref|YP_004596222.1| - 5.9e-06 26.0 0.1 9.5e-06 25.3 0.1 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|336253115|ref|YP_004596222.1| - 1.8e-05 24.5 0.0 2.7e-05 24.0 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB ArsR PF09824.9 gi|336253115|ref|YP_004596222.1| - 4.6e-05 23.1 0.0 5.5e-05 22.8 0.0 1.1 1 0 0 1 1 1 1 ArsR transcriptional regulator MarR_2 PF12802.7 gi|336253115|ref|YP_004596222.1| - 0.0011 18.8 0.1 0.0018 18.1 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|336253115|ref|YP_004596222.1| - 0.0011 18.5 0.0 0.002 17.7 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.20 gi|336253115|ref|YP_004596222.1| - 0.027 14.8 0.0 0.044 14.1 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator HTH_5 PF01022.20 gi|336253115|ref|YP_004596222.1| - 0.033 14.0 0.0 0.044 13.6 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family FUR PF01475.19 gi|336253115|ref|YP_004596222.1| - 0.055 13.6 0.0 0.067 13.3 0.0 1.2 1 0 0 1 1 1 0 Ferric uptake regulator family HTH_11 PF08279.12 gi|336253115|ref|YP_004596222.1| - 0.068 13.1 0.1 0.1 12.5 0.1 1.2 1 0 0 1 1 1 0 HTH domain DprA_WH PF17782.1 gi|336253115|ref|YP_004596222.1| - 0.071 13.2 1.9 0.65 10.1 1.9 2.3 1 1 0 1 1 1 0 DprA winged helix domain HTH_10 PF04967.12 gi|336253116|ref|YP_004596223.1| - 9.4e-21 73.4 0.1 1.5e-20 72.8 0.1 1.3 1 0 0 1 1 1 1 HTH DNA binding domain GerE PF00196.19 gi|336253116|ref|YP_004596223.1| - 0.05 13.2 0.1 2.3 7.8 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family LexA_DNA_bind PF01726.16 gi|336253116|ref|YP_004596223.1| - 0.064 13.0 0.1 0.26 11.1 0.1 1.9 1 1 0 1 1 1 0 LexA DNA binding domain HTH_24 PF13412.6 gi|336253116|ref|YP_004596223.1| - 0.14 11.8 0.0 0.32 10.6 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Homeodomain PF00046.29 gi|336253116|ref|YP_004596223.1| - 0.14 12.0 0.0 0.35 10.8 0.0 1.7 1 0 0 1 1 1 0 Homeodomain Zn-ribbon_8 PF09723.10 gi|336253117|ref|YP_004596224.1| - 2.3e-10 40.4 1.8 2.8e-10 40.1 1.8 1.1 1 0 0 1 1 1 1 Zinc ribbon domain Sgf11 PF08209.11 gi|336253117|ref|YP_004596224.1| - 5.1e-05 22.8 0.6 0.049 13.2 0.1 2.1 2 0 0 2 2 2 2 Sgf11 (transcriptional regulation protein) zf_UBZ PF18439.1 gi|336253117|ref|YP_004596224.1| - 6.2e-05 22.5 1.0 0.0035 16.9 0.4 2.1 2 0 0 2 2 2 1 Ubiquitin-Binding Zinc Finger DNA_ligase_ZBD PF03119.16 gi|336253117|ref|YP_004596224.1| - 8.9e-05 22.4 4.4 0.046 13.8 0.1 2.2 2 0 0 2 2 2 2 NAD-dependent DNA ligase C4 zinc finger domain zf-Di19 PF05605.12 gi|336253117|ref|YP_004596224.1| - 0.00027 21.1 1.1 0.0082 16.4 1.1 2.0 1 1 0 1 1 1 1 Drought induced 19 protein (Di19), zinc-binding Zn_ribbon_SprT PF17283.2 gi|336253117|ref|YP_004596224.1| - 0.0003 20.6 0.0 0.00043 20.1 0.0 1.3 1 0 0 1 1 1 1 SprT-like zinc ribbon domain zf-ribbon_3 PF13248.6 gi|336253117|ref|YP_004596224.1| - 0.00032 20.0 1.6 0.17 11.3 0.0 2.2 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.7 gi|336253117|ref|YP_004596224.1| - 0.00033 20.6 0.7 0.00043 20.3 0.7 1.2 1 0 0 1 1 1 1 Double zinc ribbon YhfH PF14149.6 gi|336253117|ref|YP_004596224.1| - 0.00039 20.3 1.3 0.092 12.7 0.3 2.2 2 0 0 2 2 2 1 YhfH-like protein zf_Rg PF17915.1 gi|336253117|ref|YP_004596224.1| - 0.00046 19.5 0.1 0.39 10.2 0.0 2.1 2 0 0 2 2 2 2 Reverse gyrase zinc finger zinc_ribbon_2 PF13240.6 gi|336253117|ref|YP_004596224.1| - 0.00069 19.2 2.7 0.19 11.5 0.3 2.1 2 0 0 2 2 2 2 zinc-ribbon domain UPF0547 PF10571.9 gi|336253117|ref|YP_004596224.1| - 0.00075 19.5 4.9 0.11 12.6 0.7 2.2 2 0 0 2 2 2 2 Uncharacterised protein family UPF0547 TF_Zn_Ribbon PF08271.12 gi|336253117|ref|YP_004596224.1| - 0.00092 18.7 5.0 0.0075 15.8 0.5 2.1 1 1 0 2 2 2 1 TFIIB zinc-binding zf-dskA_traR PF01258.17 gi|336253117|ref|YP_004596224.1| - 0.0011 18.8 2.8 0.19 11.7 0.5 2.2 2 0 0 2 2 2 1 Prokaryotic dksA/traR C4-type zinc finger Nop10p PF04135.12 gi|336253117|ref|YP_004596224.1| - 0.0012 18.8 0.7 0.099 12.7 0.0 2.1 1 1 1 2 2 2 1 Nucleolar RNA-binding protein, Nop10p family Elf1 PF05129.13 gi|336253117|ref|YP_004596224.1| - 0.0018 18.3 0.5 0.002 18.2 0.5 1.1 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like YacG PF03884.14 gi|336253117|ref|YP_004596224.1| - 0.003 17.3 0.9 0.47 10.2 0.1 2.1 2 0 0 2 2 2 1 DNA gyrase inhibitor YacG DUF1610 PF07754.11 gi|336253117|ref|YP_004596224.1| - 0.0033 17.3 2.9 0.13 12.3 0.5 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF1610) zf-IS66 PF13005.7 gi|336253117|ref|YP_004596224.1| - 0.0034 17.7 1.3 0.97 9.9 0.2 2.1 2 0 0 2 2 2 1 zinc-finger binding domain of transposase IS66 CpXC PF14353.6 gi|336253117|ref|YP_004596224.1| - 0.0034 17.4 1.4 0.095 12.8 0.1 2.0 1 1 1 2 2 2 1 CpXC protein HypA PF01155.19 gi|336253117|ref|YP_004596224.1| - 0.004 17.2 0.7 0.004 17.1 0.7 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc-ribbons_6 PF07191.12 gi|336253117|ref|YP_004596224.1| - 0.004 17.1 1.1 0.017 15.1 1.1 1.8 1 1 0 1 1 1 1 zinc-ribbons OrfB_Zn_ribbon PF07282.11 gi|336253117|ref|YP_004596224.1| - 0.0053 16.6 1.6 0.13 12.2 1.4 2.0 1 1 1 2 2 2 2 Putative transposase DNA-binding domain zf-ISL3 PF14690.6 gi|336253117|ref|YP_004596224.1| - 0.0058 17.3 0.3 2.1 9.1 0.0 2.1 2 0 0 2 2 2 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Ogr_Delta PF04606.12 gi|336253117|ref|YP_004596224.1| - 0.0064 16.4 1.1 0.72 9.9 0.1 2.2 2 0 0 2 2 2 1 Ogr/Delta-like zinc finger zinc_ribbon_4 PF13717.6 gi|336253117|ref|YP_004596224.1| - 0.0093 15.9 0.3 0.015 15.2 0.3 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zf-C4_Topoisom PF01396.19 gi|336253117|ref|YP_004596224.1| - 0.01 15.6 1.8 0.53 10.1 0.1 2.1 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Zn_Tnp_IS1595 PF12760.7 gi|336253117|ref|YP_004596224.1| - 0.011 15.7 2.1 0.64 10.0 0.2 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Prok-RING_4 PF14447.6 gi|336253117|ref|YP_004596224.1| - 0.012 15.4 0.8 0.43 10.5 1.0 2.0 1 1 1 2 2 2 0 Prokaryotic RING finger family 4 zf-C3HC4_3 PF13920.6 gi|336253117|ref|YP_004596224.1| - 0.012 15.4 0.9 0.073 12.9 0.9 1.9 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) PhnA_Zn_Ribbon PF08274.12 gi|336253117|ref|YP_004596224.1| - 0.013 15.4 3.2 0.22 11.5 0.8 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon Rubredoxin PF00301.20 gi|336253117|ref|YP_004596224.1| - 0.013 15.5 0.4 4 7.5 0.1 2.1 2 0 0 2 2 2 0 Rubredoxin zf-NADH-PPase PF09297.11 gi|336253117|ref|YP_004596224.1| - 0.017 14.8 0.3 1.3 8.7 0.3 2.2 1 1 1 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Zn_Tnp_IS91 PF14319.6 gi|336253117|ref|YP_004596224.1| - 0.017 15.1 0.5 0.019 15.0 0.5 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain DUF2072 PF09845.9 gi|336253117|ref|YP_004596224.1| - 0.019 15.2 0.4 0.023 15.0 0.4 1.3 1 0 0 1 1 1 0 Zn-ribbon containing protein zf-TFIIB PF13453.6 gi|336253117|ref|YP_004596224.1| - 0.022 14.1 2.2 0.067 12.5 2.7 1.5 1 1 1 2 2 2 0 Transcription factor zinc-finger zf-LITAF-like PF10601.9 gi|336253117|ref|YP_004596224.1| - 0.022 15.0 1.6 1.5 9.2 0.1 2.1 1 1 0 2 2 2 0 LITAF-like zinc ribbon domain RNHCP PF12647.7 gi|336253117|ref|YP_004596224.1| - 0.027 14.4 1.0 0.075 13.0 0.9 1.6 1 1 1 2 2 2 0 RNHCP domain Nudix_N_2 PF14803.6 gi|336253117|ref|YP_004596224.1| - 0.03 14.3 1.4 3.7 7.5 0.1 2.1 2 0 0 2 2 2 0 Nudix N-terminal zf-Mss51 PF13824.6 gi|336253117|ref|YP_004596224.1| - 0.031 14.4 3.3 0.77 9.9 0.3 2.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-HYPF PF07503.12 gi|336253117|ref|YP_004596224.1| - 0.033 14.0 1.6 0.076 12.8 1.6 1.6 1 1 0 1 1 1 0 HypF finger TFIIS_C PF01096.18 gi|336253117|ref|YP_004596224.1| - 0.042 13.7 1.3 4.8 7.1 0.1 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DUF983 PF06170.12 gi|336253117|ref|YP_004596224.1| - 0.052 13.9 1.5 6 7.3 0.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF983) zf-DNA_Pol PF08996.10 gi|336253117|ref|YP_004596224.1| - 0.062 13.0 0.6 0.063 13.0 0.6 1.1 1 0 0 1 1 1 0 DNA Polymerase alpha zinc finger zf_C2H2_10 PF18414.1 gi|336253117|ref|YP_004596224.1| - 0.07 12.7 1.5 3.2 7.4 0.1 2.1 2 0 0 2 2 2 0 C2H2 type zinc-finger DUF4379 PF14311.6 gi|336253117|ref|YP_004596224.1| - 0.077 13.4 0.4 0.095 13.1 0.4 1.2 1 0 0 1 1 1 0 Probable Zinc-ribbon domain Acetone_carb_G PF08882.11 gi|336253117|ref|YP_004596224.1| - 0.078 13.1 2.0 0.13 12.5 0.4 1.8 1 1 1 2 2 2 0 Acetone carboxylase gamma subunit Terminase_GpA PF05876.12 gi|336253117|ref|YP_004596224.1| - 0.078 11.5 0.7 0.076 11.6 0.7 1.0 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) FYDLN_acid PF09538.10 gi|336253117|ref|YP_004596224.1| - 0.08 13.6 0.7 2.2 9.0 0.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (FYDLN_acid) zf-C2H2_4 PF13894.6 gi|336253117|ref|YP_004596224.1| - 0.09 13.7 0.5 13 6.9 0.1 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger DUF2116 PF09889.9 gi|336253117|ref|YP_004596224.1| - 0.09 12.8 1.8 4.1 7.5 0.3 2.1 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) Rad50_zn_hook PF04423.14 gi|336253117|ref|YP_004596224.1| - 0.091 12.6 2.3 1.1 9.1 0.1 2.1 1 1 1 2 2 2 0 Rad50 zinc hook motif Cys_rich_CPXG PF14255.6 gi|336253117|ref|YP_004596224.1| - 0.093 12.6 3.1 0.46 10.4 3.2 1.9 1 1 1 2 2 2 0 Cysteine-rich CPXCG zf-RRN7 PF11781.8 gi|336253117|ref|YP_004596224.1| - 0.1 12.3 4.0 3.7 7.3 0.3 2.1 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Lar_restr_allev PF14354.6 gi|336253117|ref|YP_004596224.1| - 0.11 12.9 2.6 0.21 12.0 2.6 1.5 1 1 0 1 1 1 0 Restriction alleviation protein Lar zinc_ribbon_10 PF10058.9 gi|336253117|ref|YP_004596224.1| - 0.14 11.9 1.0 0.27 11.0 1.0 1.5 1 1 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein zf-tcix PF14952.6 gi|336253117|ref|YP_004596224.1| - 0.17 11.5 2.1 9.9 5.9 0.0 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding TerY_C PF15616.6 gi|336253117|ref|YP_004596224.1| - 0.38 10.9 3.1 5.8 7.0 0.1 2.0 1 1 1 2 2 2 0 TerY-C metal binding domain DUF3797 PF12677.7 gi|336253117|ref|YP_004596224.1| - 0.62 10.0 4.1 4.3 7.3 0.3 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) Prim_Zn_Ribbon PF08273.12 gi|336253117|ref|YP_004596224.1| - 0.7 10.2 5.7 12 6.3 1.5 2.1 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase Pyridox_ox_2 PF12900.7 gi|336253118|ref|YP_004596225.1| - 3.7e-16 59.4 0.0 4.9e-16 59.0 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Putative_PNPOx PF01243.20 gi|336253118|ref|YP_004596225.1| - 5.8e-05 23.2 0.0 7.5e-05 22.8 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyrid_ox_like PF16242.5 gi|336253118|ref|YP_004596225.1| - 0.013 15.1 0.0 0.025 14.1 0.0 1.4 1 1 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase like Apocytochr_F_C PF01333.19 gi|336253120|ref|YP_004596227.1| - 0.16 12.1 0.0 0.19 11.8 0.0 1.1 1 0 0 1 1 1 0 Apocytochrome F, C-terminal AzlD PF05437.12 gi|336253121|ref|YP_004596228.1| - 2.7e-15 56.3 8.7 3.1e-15 56.1 8.7 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport protein (AzlD) AzlC PF03591.14 gi|336253122|ref|YP_004596229.1| - 5.9e-39 133.6 11.5 5.9e-39 133.6 11.5 1.6 2 0 0 2 2 2 1 AzlC protein DUF202 PF02656.15 gi|336253123|ref|YP_004596230.1| - 2 8.9 7.7 10 6.7 0.5 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF202) YiaAB PF05360.14 gi|336253123|ref|YP_004596230.1| - 5.2 7.4 11.4 3.7 7.9 2.6 2.2 2 0 0 2 2 2 0 yiaA/B two helix domain ThiS PF02597.20 gi|336253124|ref|YP_004596231.1| - 4.4e-18 65.7 0.2 5e-18 65.5 0.2 1.0 1 0 0 1 1 1 1 ThiS family Ub-Mut7C PF14451.6 gi|336253124|ref|YP_004596231.1| - 0.11 12.4 0.1 1.1 9.1 0.0 2.1 2 0 0 2 2 2 0 Mut7-C ubiquitin TFIIF_alpha PF05793.12 gi|336253126|ref|YP_004596233.1| - 4.9 5.6 22.4 5.4 5.5 22.4 1.1 1 0 0 1 1 1 0 Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) Trypan_PARP PF05887.11 gi|336253126|ref|YP_004596233.1| - 6.9 6.6 20.5 9.5 6.2 20.5 1.3 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) NAD_kinase PF01513.21 gi|336253127|ref|YP_004596234.1| - 5.9e-39 134.0 1.3 1.2e-37 129.7 0.5 2.0 2 0 0 2 2 2 2 ATP-NAD kinase Secretin_N PF03958.17 gi|336253127|ref|YP_004596234.1| - 0.00077 19.8 0.2 0.011 16.2 0.2 2.3 1 1 0 1 1 1 1 Bacterial type II/III secretion system short domain CW_binding_2 PF04122.12 gi|336253127|ref|YP_004596234.1| - 0.13 12.9 3.3 0.26 12.0 0.9 2.5 2 1 0 2 2 2 0 Putative cell wall binding repeat 2 ATPase PF06745.13 gi|336253128|ref|YP_004596235.1| - 3.8e-50 170.4 0.0 4.5e-50 170.1 0.0 1.1 1 0 0 1 1 1 1 KaiC DnaB_C PF03796.15 gi|336253128|ref|YP_004596235.1| - 4.5e-06 26.2 0.0 0.019 14.3 0.0 2.2 1 1 0 2 2 2 2 DnaB-like helicase C terminal domain AAA_25 PF13481.6 gi|336253128|ref|YP_004596235.1| - 4.8e-06 26.3 0.0 8e-06 25.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain GvpD PF07088.11 gi|336253128|ref|YP_004596235.1| - 1.7e-05 23.6 0.1 2.5e-05 23.1 0.1 1.2 1 0 0 1 1 1 1 GvpD gas vesicle protein AAA_24 PF13479.6 gi|336253128|ref|YP_004596235.1| - 0.00021 21.1 0.0 0.00057 19.7 0.0 1.7 1 1 0 1 1 1 1 AAA domain MEDS PF14417.6 gi|336253128|ref|YP_004596235.1| - 0.00032 20.6 0.0 0.00077 19.3 0.0 1.6 1 0 0 1 1 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain Rad51 PF08423.11 gi|336253128|ref|YP_004596235.1| - 0.012 14.9 0.1 0.02 14.2 0.1 1.4 1 1 0 1 1 1 0 Rad51 RecA PF00154.21 gi|336253128|ref|YP_004596235.1| - 0.042 13.3 0.0 0.11 12.0 0.0 1.6 2 0 0 2 2 2 0 recA bacterial DNA recombination protein AAA_30 PF13604.6 gi|336253128|ref|YP_004596235.1| - 0.11 12.3 0.0 0.16 11.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain TrwB_AAD_bind PF10412.9 gi|336253128|ref|YP_004596235.1| - 0.15 10.9 0.0 0.23 10.3 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain PhoH PF02562.16 gi|336253128|ref|YP_004596235.1| - 0.17 11.3 0.0 0.28 10.6 0.0 1.2 1 0 0 1 1 1 0 PhoH-like protein Usp PF00582.26 gi|336253130|ref|YP_004596237.1| - 8.1e-32 110.7 4.3 9e-32 110.5 4.3 1.0 1 0 0 1 1 1 1 Universal stress protein family DNA_photolyase PF00875.18 gi|336253130|ref|YP_004596237.1| - 0.051 13.6 0.1 0.078 13.0 0.1 1.3 1 1 0 1 1 1 0 DNA photolyase ParBc PF02195.18 gi|336253131|ref|YP_004596238.1| - 0.077 13.3 0.1 0.29 11.5 0.0 2.0 2 1 0 2 2 2 0 ParB-like nuclease domain YadA_head PF05658.14 gi|336253131|ref|YP_004596238.1| - 1.8 9.1 5.9 0.15 12.5 0.7 2.0 2 0 0 2 2 2 0 Head domain of trimeric autotransporter adhesin RNA_pol_Rpb5_C PF01191.19 gi|336253132|ref|YP_004596239.1| - 1.4e-25 88.9 0.7 1.6e-25 88.7 0.7 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain DUF3006 PF11213.8 gi|336253132|ref|YP_004596239.1| - 0.0072 16.5 2.2 1.1 9.5 2.2 2.2 1 1 0 1 1 1 1 Protein of unknown function (DUF3006) RNA_pol_Rpb2_1 PF04563.15 gi|336253133|ref|YP_004596240.1| - 1.5e-50 171.6 0.1 1.8e-50 171.3 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_2 PF04561.14 gi|336253133|ref|YP_004596240.1| - 5.4e-27 94.7 0.1 8.2e-27 94.1 0.1 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_3 PF04565.16 gi|336253133|ref|YP_004596240.1| - 8.6e-24 83.5 0.0 1.6e-23 82.6 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb2_6 PF00562.28 gi|336253134|ref|YP_004596241.1| - 1.2e-128 429.5 0.0 1.6e-128 429.1 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_7 PF04560.20 gi|336253134|ref|YP_004596241.1| - 1.9e-29 101.9 0.1 3.5e-29 101.1 0.1 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_4 PF04566.13 gi|336253134|ref|YP_004596241.1| - 4e-21 75.1 0.4 7.3e-21 74.2 0.4 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.17 gi|336253134|ref|YP_004596241.1| - 4.3e-10 40.0 5.4 1.3e-09 38.5 5.4 1.9 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 5 OrfB_Zn_ribbon PF07282.11 gi|336253134|ref|YP_004596241.1| - 0.0077 16.1 0.8 0.015 15.2 0.8 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain NOB1_Zn_bind PF08772.11 gi|336253134|ref|YP_004596241.1| - 0.18 12.0 0.1 0.35 11.0 0.1 1.4 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like Auto_anti-p27 PF06677.12 gi|336253134|ref|YP_004596241.1| - 0.41 10.8 2.5 0.72 10.1 2.5 1.4 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-ribbon_3 PF13248.6 gi|336253134|ref|YP_004596241.1| - 1.6 8.2 3.4 17 5.0 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain RNA_pol_Rpb1_1 PF04997.12 gi|336253135|ref|YP_004596242.1| - 1.4e-112 376.1 0.0 3.8e-112 374.7 0.0 1.7 2 0 0 2 2 2 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.20 gi|336253135|ref|YP_004596242.1| - 2.4e-68 229.6 0.3 3.8e-68 228.9 0.3 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_4 PF05000.17 gi|336253135|ref|YP_004596242.1| - 7.8e-32 109.4 0.0 1.8e-31 108.3 0.0 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_3 PF04983.18 gi|336253135|ref|YP_004596242.1| - 2.2e-28 99.2 0.0 4e-28 98.3 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_5 PF04998.17 gi|336253135|ref|YP_004596242.1| - 2.1e-26 92.9 0.0 4.1e-26 92.0 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 HTH_3 PF01381.22 gi|336253135|ref|YP_004596242.1| - 0.0087 16.1 0.0 0.025 14.6 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix RNA_pol_Rpb1_5 PF04998.17 gi|336253136|ref|YP_004596243.1| - 1.5e-54 185.2 0.3 1.8e-54 185.0 0.3 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 KH_5 PF13184.6 gi|336253137|ref|YP_004596244.1| - 3.5e-11 43.0 0.1 2.1e-10 40.5 0.0 2.0 2 0 0 2 2 2 1 NusA-like KH domain KH_2 PF07650.17 gi|336253137|ref|YP_004596244.1| - 1.2e-10 41.0 0.1 8.1e-05 22.4 0.0 2.2 1 1 1 2 2 2 2 KH domain KH_4 PF13083.6 gi|336253137|ref|YP_004596244.1| - 9.1e-08 31.9 0.1 0.0009 19.1 0.0 2.2 2 0 0 2 2 2 2 KH domain KH_1 PF00013.29 gi|336253137|ref|YP_004596244.1| - 0.00054 19.7 0.0 0.019 14.7 0.0 2.3 1 1 1 2 2 2 1 KH domain Ribosom_S12_S23 PF00164.25 gi|336253138|ref|YP_004596245.1| - 5.5e-50 167.8 0.4 6.8e-50 167.5 0.4 1.1 1 0 0 1 1 1 1 Ribosomal protein S12/S23 Ribosomal_S7 PF00177.21 gi|336253139|ref|YP_004596246.1| - 3.4e-36 124.1 4.2 4.2e-36 123.8 4.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e DUF2420 PF10336.9 gi|336253139|ref|YP_004596246.1| - 0.12 12.5 0.0 0.18 11.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2420) GTP_EFTU PF00009.27 gi|336253141|ref|YP_004596248.1| - 6.4e-65 218.3 0.3 1.1e-64 217.5 0.3 1.4 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.18 gi|336253141|ref|YP_004596248.1| - 3.5e-24 84.9 0.0 1.1e-23 83.3 0.0 1.9 1 0 0 1 1 1 1 Elongation factor G, domain IV EFG_C PF00679.24 gi|336253141|ref|YP_004596248.1| - 5.8e-24 83.9 0.1 6.8e-23 80.5 0.0 2.6 2 0 0 2 2 2 1 Elongation factor G C-terminus EFG_II PF14492.6 gi|336253141|ref|YP_004596248.1| - 7.2e-22 77.3 0.4 2.4e-21 75.6 0.4 2.0 1 0 0 1 1 1 1 Elongation Factor G, domain II GTP_EFTU_D2 PF03144.25 gi|336253141|ref|YP_004596248.1| - 8.4e-19 67.7 1.7 9.7e-18 64.3 0.8 3.0 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|336253141|ref|YP_004596248.1| - 2.9e-05 24.1 0.3 0.00021 21.4 0.1 2.5 2 0 0 2 2 2 1 50S ribosome-binding GTPase RF3_C PF16658.5 gi|336253141|ref|YP_004596248.1| - 0.041 13.7 0.0 0.092 12.6 0.0 1.6 1 0 0 1 1 1 0 Class II release factor RF3, C-terminal domain RsgA_GTPase PF03193.16 gi|336253141|ref|YP_004596248.1| - 0.087 12.7 0.2 1.3 8.9 0.0 2.7 3 0 0 3 3 3 0 RsgA GTPase Ras PF00071.22 gi|336253141|ref|YP_004596248.1| - 0.17 11.5 0.0 0.39 10.3 0.0 1.5 1 0 0 1 1 1 0 Ras family Seryl_tRNA_N PF02403.22 gi|336253142|ref|YP_004596249.1| - 4.5e-29 100.9 10.0 9e-29 99.9 10.0 1.5 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain tRNA-synt_2b PF00587.25 gi|336253142|ref|YP_004596249.1| - 6e-27 94.8 0.0 1.1e-26 93.9 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) LUC7 PF03194.15 gi|336253142|ref|YP_004596249.1| - 0.0078 15.9 0.3 0.011 15.4 0.3 1.2 1 0 0 1 1 1 1 LUC7 N_terminus FapA PF03961.13 gi|336253142|ref|YP_004596249.1| - 0.02 13.6 3.0 0.031 12.9 3.0 1.2 1 0 0 1 1 1 0 Flagellar Assembly Protein A LidA_Long_CC PF18641.1 gi|336253142|ref|YP_004596249.1| - 0.052 13.6 1.6 0.098 12.7 1.6 1.5 1 0 0 1 1 1 0 LidA long coiled-coil domain Vps54_N PF10475.9 gi|336253142|ref|YP_004596249.1| - 0.13 11.6 1.1 0.19 11.0 1.1 1.2 1 0 0 1 1 1 0 Vacuolar-sorting protein 54, of GARP complex Atg14 PF10186.9 gi|336253142|ref|YP_004596249.1| - 0.17 11.0 5.2 0.25 10.4 5.2 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 OmpH PF03938.14 gi|336253142|ref|YP_004596249.1| - 0.21 11.9 3.2 0.38 11.1 3.2 1.4 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) Golgin_A5 PF09787.9 gi|336253142|ref|YP_004596249.1| - 0.28 10.6 6.2 0.43 10.0 5.6 1.5 1 1 0 1 1 1 0 Golgin subfamily A member 5 V-SNARE PF05008.15 gi|336253142|ref|YP_004596249.1| - 0.32 11.4 10.7 30 5.1 6.2 3.4 2 1 0 2 2 2 0 Vesicle transport v-SNARE protein N-terminus HAUS5 PF14817.6 gi|336253142|ref|YP_004596249.1| - 0.38 9.4 5.0 0.54 9.0 5.0 1.2 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 5 AAA_11 PF13086.6 gi|336253142|ref|YP_004596249.1| - 0.49 10.1 3.7 0.72 9.6 3.7 1.2 1 0 0 1 1 1 0 AAA domain CENP-F_leu_zip PF10473.9 gi|336253142|ref|YP_004596249.1| - 1.3 9.1 15.4 0.12 12.4 10.2 2.0 2 1 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 zf-C4H2 PF10146.9 gi|336253142|ref|YP_004596249.1| - 1.5 9.1 4.4 2.8 8.2 4.4 1.4 1 0 0 1 1 1 0 Zinc finger-containing protein ZapB PF06005.12 gi|336253142|ref|YP_004596249.1| - 1.9 9.0 15.4 0.51 10.8 0.7 3.1 2 1 1 3 3 3 0 Cell division protein ZapB CENP-H PF05837.12 gi|336253142|ref|YP_004596249.1| - 2.2 8.8 6.9 4.1 7.8 6.9 1.4 1 0 0 1 1 1 0 Centromere protein H (CENP-H) DUF4363 PF14276.6 gi|336253142|ref|YP_004596249.1| - 3 8.0 9.2 9.5 6.4 7.3 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF4363) HlyD_2 PF12700.7 gi|336253142|ref|YP_004596249.1| - 7.4 5.2 6.4 10 4.7 6.4 1.1 1 0 0 1 1 1 0 HlyD family secretion protein UPF0242 PF06785.11 gi|336253142|ref|YP_004596249.1| - 7.5 6.6 8.1 1.6 8.8 4.7 1.6 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus Sigma70_r4_2 PF08281.12 gi|336253143|ref|YP_004596250.1| - 0.077 12.7 0.0 0.17 11.6 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 TrkA_C PF02080.21 gi|336253144|ref|YP_004596251.1| - 1.7e-20 72.6 3.0 1.2e-12 47.4 0.2 2.6 2 0 0 2 2 2 2 TrkA-C domain PhoU PF01895.19 gi|336253144|ref|YP_004596251.1| - 1.7e-17 63.6 7.2 4.3e-08 33.5 0.4 2.4 2 0 0 2 2 2 2 PhoU domain PhoU_div PF01865.16 gi|336253144|ref|YP_004596251.1| - 0.0011 18.4 2.9 0.79 9.0 0.0 3.1 3 1 0 3 3 3 2 Protein of unknown function DUF47 CLZ PF16526.5 gi|336253144|ref|YP_004596251.1| - 0.089 13.2 0.8 14 6.1 0.2 2.3 2 0 0 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels KfrA_N PF11740.8 gi|336253144|ref|YP_004596251.1| - 0.097 13.4 3.5 0.22 12.2 0.1 3.0 4 0 0 4 4 4 0 Plasmid replication region DNA-binding N-term CRCB PF02537.15 gi|336253146|ref|YP_004596253.1| - 3e-22 78.7 5.0 3.6e-22 78.5 5.0 1.1 1 0 0 1 1 1 1 CrcB-like protein, Camphor Resistance (CrcB) DUF3956 PF13104.6 gi|336253146|ref|YP_004596253.1| - 2.7 8.3 5.0 2.3 8.5 0.4 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF3956) CRCB PF02537.15 gi|336253147|ref|YP_004596254.1| - 1.4e-15 57.3 5.5 1.9e-15 57.0 5.5 1.1 1 0 0 1 1 1 1 CrcB-like protein, Camphor Resistance (CrcB) Cation_efflux PF01545.21 gi|336253148|ref|YP_004596255.1| - 2.1e-41 141.9 8.1 2.6e-41 141.6 8.1 1.1 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|336253148|ref|YP_004596255.1| - 6.6e-17 61.4 1.5 1.3e-16 60.5 1.5 1.5 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter EI24 PF07264.11 gi|336253148|ref|YP_004596255.1| - 0.037 14.3 3.5 0.047 13.9 2.6 1.6 1 1 1 2 2 2 0 Etoposide-induced protein 2.4 (EI24) ASL_C2 PF14698.6 gi|336253148|ref|YP_004596255.1| - 0.055 14.2 0.0 0.18 12.6 0.0 1.9 1 0 0 1 1 1 0 Argininosuccinate lyase C-terminal DUF2634 PF10934.8 gi|336253148|ref|YP_004596255.1| - 0.2 11.8 0.0 0.34 11.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2634) Lactamase_B PF00753.27 gi|336253149|ref|YP_004596256.1| - 4.5e-24 85.5 6.4 6.7e-24 85.0 6.4 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|336253149|ref|YP_004596256.1| - 1.4e-07 31.2 0.5 6.2e-07 29.1 0.3 2.0 1 1 0 2 2 2 1 Beta-lactamase superfamily domain AMP-binding PF00501.28 gi|336253150|ref|YP_004596257.1| - 6.8e-94 314.8 0.0 8e-94 314.6 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme MgtE PF01769.16 gi|336253151|ref|YP_004596258.1| - 1.8e-21 76.8 13.2 1.8e-21 76.8 13.2 1.7 2 0 0 2 2 2 1 Divalent cation transporter MgtE PF01769.16 gi|336253152|ref|YP_004596259.1| - 1.5e-20 73.8 6.8 1.5e-20 73.8 6.8 1.7 2 0 0 2 2 2 1 Divalent cation transporter Transmemb_17 PF09799.9 gi|336253152|ref|YP_004596259.1| - 0.0037 17.8 4.1 0.0099 16.5 4.1 1.7 1 0 0 1 1 1 1 Predicted membrane protein Yip1 PF04893.17 gi|336253152|ref|YP_004596259.1| - 0.2 11.3 19.3 0.67 9.6 19.3 1.7 1 1 0 1 1 1 0 Yip1 domain Clostridium_P47 PF06597.11 gi|336253152|ref|YP_004596259.1| - 0.35 9.6 2.3 0.46 9.1 2.3 1.2 1 0 0 1 1 1 0 Clostridium P-47 protein UT PF03253.14 gi|336253154|ref|YP_004596261.1| - 0.00072 18.8 0.5 0.006 15.8 0.1 1.9 2 0 0 2 2 2 1 Urea transporter Sensor_TM1 PF13755.6 gi|336253154|ref|YP_004596261.1| - 0.015 15.0 0.1 0.029 14.1 0.1 1.4 1 0 0 1 1 1 0 Sensor N-terminal transmembrane domain CorA PF01544.18 gi|336253154|ref|YP_004596261.1| - 0.2 10.9 0.9 0.44 9.8 0.9 1.5 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein Peripla_BP_2 PF01497.18 gi|336253155|ref|YP_004596262.1| - 2.1e-12 47.1 0.0 3.9e-12 46.3 0.0 1.5 1 1 0 1 1 1 1 Periplasmic binding protein TAT_signal PF10518.9 gi|336253155|ref|YP_004596262.1| - 0.014 15.3 0.2 0.027 14.3 0.2 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence PLDc_N PF13396.6 gi|336253156|ref|YP_004596263.1| - 0.033 14.1 5.1 0.033 14.1 5.1 1.8 1 1 1 2 2 2 0 Phospholipase_D-nuclease N-terminal DUF4499 PF14934.6 gi|336253156|ref|YP_004596263.1| - 0.041 14.2 0.7 0.054 13.8 0.7 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4499) Thiolase_N PF00108.23 gi|336253157|ref|YP_004596264.1| - 6.4e-76 255.1 3.4 9.7e-76 254.5 3.4 1.3 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|336253157|ref|YP_004596264.1| - 7.8e-43 145.0 0.1 2e-42 143.7 0.1 1.8 2 0 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|336253157|ref|YP_004596264.1| - 4.5e-06 26.4 0.9 1.1e-05 25.1 0.9 1.7 1 0 0 1 1 1 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.10 gi|336253157|ref|YP_004596264.1| - 0.056 13.3 6.7 0.2 11.5 0.1 2.6 3 0 0 3 3 3 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AFOR_C PF01314.18 gi|336253158|ref|YP_004596265.1| - 0.07 12.1 0.1 0.087 11.8 0.1 1.2 1 0 0 1 1 1 0 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 BPL_LplA_LipB PF03099.19 gi|336253160|ref|YP_004596267.1| - 0.094 12.6 0.0 0.14 12.1 0.0 1.2 1 0 0 1 1 1 0 Biotin/lipoate A/B protein ligase family Peptidase_M23 PF01551.22 gi|336253161|ref|YP_004596268.1| - 0.0058 16.8 0.0 0.012 15.7 0.0 1.6 1 0 0 1 1 1 1 Peptidase family M23 Serpin PF00079.20 gi|336253162|ref|YP_004596269.1| - 2.6e-107 359.4 0.0 3e-107 359.2 0.0 1.0 1 0 0 1 1 1 1 Serpin (serine protease inhibitor) p450 PF00067.22 gi|336253163|ref|YP_004596270.1| - 1.1e-85 288.1 0.0 1.4e-85 287.9 0.0 1.0 1 0 0 1 1 1 1 Cytochrome P450 Sdh5 PF03937.16 gi|336253163|ref|YP_004596270.1| - 0.0049 16.8 0.2 0.012 15.6 0.2 1.6 1 0 0 1 1 1 1 Flavinator of succinate dehydrogenase 4HBT PF03061.22 gi|336253164|ref|YP_004596271.1| - 2e-13 50.5 0.0 3.6e-13 49.7 0.0 1.4 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.6 gi|336253164|ref|YP_004596271.1| - 2.4e-05 24.5 0.0 4.8e-05 23.5 0.0 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF4442) nos_propeller_2 PF18793.1 gi|336253165|ref|YP_004596272.1| - 2.6e-31 107.7 0.2 1.1e-30 105.8 0.2 2.0 2 0 0 2 2 2 1 Nitrous oxide reductase propeller repeat 2 nos_propeller PF18764.1 gi|336253165|ref|YP_004596272.1| - 4.4e-31 106.6 0.4 3.7e-29 100.4 0.1 3.3 3 0 0 3 3 3 1 Nitrous oxide reductase propeller repeat Cupredoxin_1 PF13473.6 gi|336253165|ref|YP_004596272.1| - 2.5e-08 34.0 0.0 5.7e-08 32.8 0.0 1.6 1 0 0 1 1 1 1 Cupredoxin-like domain TAT_signal PF10518.9 gi|336253165|ref|YP_004596272.1| - 3.5e-07 29.8 4.0 5.4e-07 29.2 4.0 1.3 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence COX2 PF00116.20 gi|336253165|ref|YP_004596272.1| - 2.8e-06 27.2 0.0 6.5e-06 26.0 0.0 1.6 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, periplasmic domain DUF5336 PF17270.2 gi|336253166|ref|YP_004596273.1| - 0.024 14.3 1.0 0.044 13.4 0.1 1.8 2 0 0 2 2 2 0 Family of unknown function (DUF5336) NosD PF05048.13 gi|336253167|ref|YP_004596274.1| - 1.7e-54 184.7 15.0 3.2e-53 180.5 14.2 2.0 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|336253167|ref|YP_004596274.1| - 1.6e-30 106.1 16.6 1.1e-22 80.6 3.4 2.9 2 1 1 3 3 3 2 Right handed beta helix region DUF1565 PF07602.11 gi|336253167|ref|YP_004596274.1| - 1.6e-07 30.9 11.9 0.0023 17.3 0.2 2.6 1 1 1 2 2 2 2 Protein of unknown function (DUF1565) eIF-6 PF01912.18 gi|336253167|ref|YP_004596274.1| - 0.00031 20.2 2.0 0.00064 19.2 2.0 1.5 1 0 0 1 1 1 1 eIF-6 family ABC_tran PF00005.27 gi|336253168|ref|YP_004596275.1| - 2.1e-28 99.6 0.0 3.4e-28 98.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|336253168|ref|YP_004596275.1| - 4e-11 43.3 0.1 6.9e-07 29.4 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|336253168|ref|YP_004596275.1| - 0.036 13.5 0.1 4.6 6.6 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|336253168|ref|YP_004596275.1| - 0.065 13.7 0.3 0.11 12.9 0.3 1.3 1 0 0 1 1 1 0 AAA domain DLIC PF05783.11 gi|336253168|ref|YP_004596275.1| - 0.11 11.2 0.0 0.17 10.7 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) ABC2_membrane_2 PF12679.7 gi|336253169|ref|YP_004596276.1| - 3.5e-26 92.2 21.1 1.1e-24 87.3 21.1 2.0 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|336253169|ref|YP_004596276.1| - 0.0029 17.2 1.3 0.011 15.3 1.5 1.8 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|336253169|ref|YP_004596276.1| - 0.34 10.0 10.5 0.42 9.7 10.5 1.2 1 0 0 1 1 1 0 ABC-2 family transporter protein NosL PF05573.12 gi|336253170|ref|YP_004596277.1| - 1.4e-40 138.7 0.5 1.7e-40 138.4 0.5 1.0 1 0 0 1 1 1 1 NosL DUF2244 PF10003.9 gi|336253172|ref|YP_004596279.1| - 0.56 9.9 4.2 0.58 9.8 4.2 1.0 1 0 0 1 1 1 0 Integral membrane protein (DUF2244) Isochorismatase PF00857.20 gi|336253173|ref|YP_004596280.1| - 2.4e-49 167.9 0.0 2.7e-49 167.7 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family Peptidase_M76 PF09768.9 gi|336253174|ref|YP_004596281.1| - 0.028 14.2 0.0 0.044 13.6 0.0 1.3 1 0 0 1 1 1 0 Peptidase M76 family Peptidase_M78 PF06114.13 gi|336253174|ref|YP_004596281.1| - 0.16 11.9 0.0 0.3 11.0 0.0 1.4 1 0 0 1 1 1 0 IrrE N-terminal-like domain DUF4956 PF16316.5 gi|336253174|ref|YP_004596281.1| - 1.6 8.3 3.1 3 7.5 3.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4956) Peptidase_M76 PF09768.9 gi|336253175|ref|YP_004596282.1| - 0.0084 15.9 0.0 0.013 15.2 0.0 1.2 1 0 0 1 1 1 1 Peptidase M76 family Glyco_hydro_20b PF02838.15 gi|336253175|ref|YP_004596282.1| - 0.0087 16.8 0.0 0.019 15.7 0.0 1.5 1 0 0 1 1 1 1 Glycosyl hydrolase family 20, domain 2 DUF4157 PF13699.6 gi|336253175|ref|YP_004596282.1| - 0.096 12.9 0.0 0.33 11.2 0.0 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4157) QRPTase_C PF01729.19 gi|336253176|ref|YP_004596283.1| - 1.5e-16 60.6 0.0 2.1e-16 60.2 0.0 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 gi|336253176|ref|YP_004596283.1| - 0.012 15.6 0.0 0.041 13.9 0.0 2.0 2 0 0 2 2 2 0 Quinolinate phosphoribosyl transferase, N-terminal domain NAPRTase_N PF17767.1 gi|336253176|ref|YP_004596283.1| - 0.19 12.2 0.0 0.52 10.7 0.0 1.8 1 1 0 1 1 1 0 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain AMMECR1 PF01871.17 gi|336253177|ref|YP_004596284.1| - 3.2e-40 137.5 0.0 3.7e-40 137.3 0.0 1.0 1 0 0 1 1 1 1 AMMECR1 DprA_WH PF17782.1 gi|336253178|ref|YP_004596285.1| - 0.027 14.6 1.6 0.046 13.8 1.6 1.4 1 0 0 1 1 1 0 DprA winged helix domain HalOD1 PF18545.1 gi|336253179|ref|YP_004596286.1| - 9.5e-24 83.5 2.5 1.3e-23 83.0 2.5 1.2 1 0 0 1 1 1 1 Halobacterial output domain 1 HalOD1 PF18545.1 gi|336253180|ref|YP_004596287.1| - 6.9e-24 83.9 1.4 1e-23 83.3 1.2 1.4 1 1 0 1 1 1 1 Halobacterial output domain 1 DUF1833 PF08875.11 gi|336253180|ref|YP_004596287.1| - 0.074 12.6 0.1 0.088 12.3 0.1 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF1833) Cadherin-like PF12733.7 gi|336253180|ref|YP_004596287.1| - 0.097 13.2 3.2 0.28 11.7 3.2 1.7 1 1 0 1 1 1 0 Cadherin-like beta sandwich domain BAT PF15915.5 gi|336253181|ref|YP_004596288.1| - 2.2e-16 60.1 2.3 3.3e-16 59.5 2.3 1.2 1 0 0 1 1 1 1 GAF and HTH_10 associated domain HTH_10 PF04967.12 gi|336253181|ref|YP_004596288.1| - 6.5e-09 35.5 0.1 1.1e-08 34.7 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_AraC PF00165.23 gi|336253181|ref|YP_004596288.1| - 0.0074 16.4 0.0 0.015 15.4 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix proteins, AraC family UPF0122 PF04297.14 gi|336253181|ref|YP_004596288.1| - 0.014 15.6 0.0 0.028 14.7 0.0 1.4 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like MarR_2 PF12802.7 gi|336253181|ref|YP_004596288.1| - 0.045 13.6 0.1 0.12 12.2 0.0 1.8 2 0 0 2 2 2 0 MarR family HTH_1 PF00126.27 gi|336253181|ref|YP_004596288.1| - 0.1 12.6 0.0 0.31 11.0 0.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family AgrD PF05931.11 gi|336253181|ref|YP_004596288.1| - 0.21 11.7 0.1 0.61 10.2 0.1 1.7 2 0 0 2 2 2 0 Staphylococcal AgrD protein HTH_20 PF12840.7 gi|336253182|ref|YP_004596289.1| - 0.0013 18.7 1.1 0.01 15.9 1.1 2.1 1 1 0 1 1 1 1 Helix-turn-helix domain tRNA_anti-codon PF01336.25 gi|336253183|ref|YP_004596290.1| - 8.6e-32 109.0 8.5 2.4e-13 49.9 0.5 3.5 3 0 0 3 3 3 3 OB-fold nucleic acid binding domain REPA_OB_2 PF16900.5 gi|336253183|ref|YP_004596290.1| - 1.8e-14 53.4 3.7 5.4e-06 26.2 0.1 3.3 3 0 0 3 3 3 3 Replication protein A OB domain CDC24_OB3 PF17244.2 gi|336253183|ref|YP_004596290.1| - 8.1e-11 42.1 0.1 0.00019 21.2 0.0 3.2 3 0 0 3 3 3 2 Cell division control protein 24, OB domain 3 SSB PF00436.25 gi|336253183|ref|YP_004596290.1| - 0.00015 21.7 0.2 2.9 8.0 0.0 3.4 3 0 0 3 3 3 2 Single-strand binding protein family POT1PC PF16686.5 gi|336253183|ref|YP_004596290.1| - 0.0032 17.3 0.0 0.85 9.5 0.0 2.7 2 1 0 2 2 2 1 ssDNA-binding domain of telomere protection protein tRNA_anti_2 PF13742.6 gi|336253183|ref|YP_004596290.1| - 0.0042 17.3 0.1 0.43 10.8 0.0 2.8 3 0 0 3 3 3 1 OB-fold nucleic acid binding domain DUF4131 PF13567.6 gi|336253183|ref|YP_004596290.1| - 0.0048 16.6 0.9 7.1 6.2 0.1 3.4 3 0 0 3 3 3 1 Domain of unknown function (DUF4131) Rep_fac-A_C PF08646.10 gi|336253183|ref|YP_004596290.1| - 0.0089 15.8 0.0 12 5.6 0.0 3.1 3 0 0 3 3 3 1 Replication factor-A C terminal domain DUF4539 PF15072.6 gi|336253183|ref|YP_004596290.1| - 0.034 14.2 0.1 0.27 11.3 0.0 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4539) CBFD_NFYB_HMF PF00808.23 gi|336253184|ref|YP_004596291.1| - 9.1e-27 93.1 0.3 4e-13 49.4 0.1 2.0 2 0 0 2 2 2 2 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.24 gi|336253184|ref|YP_004596291.1| - 4.7e-16 59.3 0.7 2.3e-11 44.2 0.1 2.0 1 1 1 2 2 2 2 Core histone H2A/H2B/H3/H4 CENP-T_C PF15511.6 gi|336253184|ref|YP_004596291.1| - 5.1e-07 29.8 1.1 7.4e-05 22.8 0.1 2.1 1 1 1 2 2 2 2 Centromere kinetochore component CENP-T histone fold CENP-S PF15630.6 gi|336253184|ref|YP_004596291.1| - 0.00026 21.3 0.9 0.00057 20.2 0.3 1.8 2 0 0 2 2 2 1 CENP-S protein TAF PF02969.17 gi|336253184|ref|YP_004596291.1| - 0.016 15.3 2.1 0.28 11.4 0.3 2.3 2 0 0 2 2 2 0 TATA box binding protein associated factor (TAF) TFIID-31kDa PF02291.15 gi|336253184|ref|YP_004596291.1| - 0.028 14.5 0.9 0.066 13.3 0.3 1.7 2 0 0 2 2 2 0 Transcription initiation factor IID, 31kD subunit TFIID-18kDa PF02269.16 gi|336253184|ref|YP_004596291.1| - 0.039 14.0 0.3 4.5 7.4 0.0 2.1 2 0 0 2 2 2 0 Transcription initiation factor IID, 18kD subunit DUF1931 PF09123.11 gi|336253184|ref|YP_004596291.1| - 0.068 13.3 2.0 0.22 11.6 0.1 2.0 1 1 0 2 2 2 0 Domain of unknown function (DUF1931) Hist_deacetyl PF00850.19 gi|336253185|ref|YP_004596292.1| - 5e-80 269.3 0.2 7.2e-80 268.7 0.2 1.2 1 0 0 1 1 1 1 Histone deacetylase domain tRNA_NucTransf2 PF09249.11 gi|336253186|ref|YP_004596293.1| - 4.9e-45 152.4 0.0 7.6e-45 151.8 0.0 1.3 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.23 gi|336253186|ref|YP_004596293.1| - 5.2e-13 49.1 0.0 9.7e-13 48.2 0.0 1.5 1 0 0 1 1 1 1 Nucleotidyltransferase domain SMODS PF18144.1 gi|336253186|ref|YP_004596293.1| - 0.0019 18.4 0.0 0.011 15.9 0.0 2.0 1 1 0 1 1 1 1 Second Messenger Oligonucleotide or Dinucleotide Synthetase domain PDDEXK_5 PF11645.8 gi|336253187|ref|YP_004596294.1| - 4.4e-25 88.3 0.0 4.9e-25 88.1 0.0 1.0 1 0 0 1 1 1 1 PD-(D/E)XK endonuclease MoCF_biosynth PF00994.24 gi|336253188|ref|YP_004596295.1| - 7e-33 113.3 0.0 9e-33 113.0 0.0 1.1 1 0 0 1 1 1 1 Probable molybdopterin binding domain tRNA_anti-codon PF01336.25 gi|336253189|ref|YP_004596296.1| - 0.04 13.9 0.1 0.18 11.8 0.0 2.1 2 0 0 2 2 2 0 OB-fold nucleic acid binding domain RMI1_C PF16099.5 gi|336253189|ref|YP_004596296.1| - 0.053 13.4 0.0 0.13 12.1 0.0 1.6 1 0 0 1 1 1 0 Recq-mediated genome instability protein 1, C-terminal OB-fold Notch PF00066.17 gi|336253189|ref|YP_004596296.1| - 0.15 12.5 0.6 0.24 11.9 0.6 1.3 1 0 0 1 1 1 0 LNR domain Fn3-like PF14310.6 gi|336253190|ref|YP_004596297.1| - 0.46 10.6 2.7 0.49 10.5 0.5 2.0 2 0 0 2 2 2 0 Fibronectin type III-like domain Abhydrolase_2 PF02230.16 gi|336253191|ref|YP_004596298.1| - 3.8e-18 66.1 0.0 2.1e-17 63.7 0.0 1.9 1 1 0 1 1 1 1 Phospholipase/Carboxylesterase Hydrolase_4 PF12146.8 gi|336253191|ref|YP_004596298.1| - 3.1e-07 29.9 0.1 0.0026 17.1 0.0 2.8 2 1 0 2 2 2 2 Serine aminopeptidase, S33 Peptidase_S9 PF00326.21 gi|336253191|ref|YP_004596298.1| - 6.3e-07 29.1 0.0 0.00099 18.6 0.0 2.3 1 1 0 1 1 1 1 Prolyl oligopeptidase family FSH1 PF03959.13 gi|336253191|ref|YP_004596298.1| - 0.00013 21.7 0.0 0.00046 19.9 0.0 1.7 1 1 0 1 1 1 1 Serine hydrolase (FSH1) Abhydrolase_6 PF12697.7 gi|336253191|ref|YP_004596298.1| - 0.00087 20.0 5.9 0.014 16.0 1.1 2.1 1 1 1 2 2 2 2 Alpha/beta hydrolase family DLH PF01738.18 gi|336253191|ref|YP_004596298.1| - 0.0014 18.2 0.0 0.0031 17.1 0.0 1.5 1 1 0 1 1 1 1 Dienelactone hydrolase family Abhydrolase_3 PF07859.13 gi|336253191|ref|YP_004596298.1| - 0.017 15.0 0.1 2.3 8.0 0.0 2.2 1 1 1 2 2 2 0 alpha/beta hydrolase fold Abhydrolase_1 PF00561.20 gi|336253191|ref|YP_004596298.1| - 0.024 14.3 0.0 2.8 7.5 0.0 2.5 1 1 1 2 2 2 0 alpha/beta hydrolase fold Esterase PF00756.20 gi|336253191|ref|YP_004596298.1| - 0.048 13.3 0.0 0.063 12.9 0.0 1.3 1 0 0 1 1 1 0 Putative esterase Glyoxalase PF00903.25 gi|336253192|ref|YP_004596299.1| - 3.7e-26 91.8 3.2 2.1e-12 47.4 0.2 2.2 2 0 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|336253192|ref|YP_004596299.1| - 0.0006 20.1 1.3 0.29 11.4 0.1 2.9 1 1 1 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.6 gi|336253192|ref|YP_004596299.1| - 4.8 7.3 5.9 39 4.3 0.8 3.3 2 1 1 3 3 3 0 Glyoxalase-like domain RHH_1 PF01402.21 gi|336253193|ref|YP_004596300.1| - 0.00035 20.4 0.1 0.00035 20.4 0.1 2.4 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family DUF3562 PF12085.8 gi|336253193|ref|YP_004596300.1| - 0.0063 16.1 0.1 0.012 15.2 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3562) CopG_antitoxin PF12441.8 gi|336253193|ref|YP_004596300.1| - 0.013 16.1 0.0 0.028 14.9 0.0 1.6 1 0 0 1 1 1 0 CopG antitoxin of type II toxin-antitoxin system DUF2238 PF09997.9 gi|336253195|ref|YP_004596302.1| - 0.2 11.4 18.3 0.041 13.7 3.8 4.0 2 2 0 2 2 2 0 Predicted membrane protein (DUF2238) Aldo_ket_red PF00248.21 gi|336253196|ref|YP_004596303.1| - 2.9e-61 207.3 0.0 3.8e-59 200.3 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family DpaA_N PF16924.5 gi|336253196|ref|YP_004596303.1| - 0.037 14.1 0.0 0.084 13.0 0.0 1.5 1 0 0 1 1 1 0 Dipicolinate synthase subunit A N-terminal domain ABC_membrane PF00664.23 gi|336253197|ref|YP_004596304.1| - 2.8e-41 142.0 0.1 3.5e-41 141.7 0.1 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 gi|336253197|ref|YP_004596304.1| - 1.5e-34 119.5 0.0 2.4e-34 118.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter Zeta_toxin PF06414.12 gi|336253197|ref|YP_004596304.1| - 0.00099 18.4 0.0 0.0018 17.6 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin AAA_22 PF13401.6 gi|336253197|ref|YP_004596304.1| - 0.0033 17.7 0.2 0.016 15.5 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|336253197|ref|YP_004596304.1| - 0.0048 17.3 0.9 0.013 15.9 0.9 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_21 PF13304.6 gi|336253197|ref|YP_004596304.1| - 0.0068 16.3 0.0 0.014 15.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_30 PF13604.6 gi|336253197|ref|YP_004596304.1| - 0.0095 15.7 0.1 0.022 14.5 0.1 1.6 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|336253197|ref|YP_004596304.1| - 0.015 14.8 0.3 0.37 10.2 0.1 2.1 1 1 1 2 2 2 0 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|336253197|ref|YP_004596304.1| - 0.023 14.6 0.0 0.043 13.7 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_29 PF13555.6 gi|336253197|ref|YP_004596304.1| - 0.03 14.1 0.9 0.055 13.2 0.0 1.9 2 0 0 2 2 1 0 P-loop containing region of AAA domain HR_lesion PF05514.11 gi|336253197|ref|YP_004596304.1| - 0.068 13.4 0.1 0.14 12.4 0.1 1.5 1 0 0 1 1 1 0 HR-like lesion-inducing AAA_33 PF13671.6 gi|336253197|ref|YP_004596304.1| - 0.068 13.3 0.0 0.15 12.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain DUF87 PF01935.17 gi|336253197|ref|YP_004596304.1| - 0.075 13.1 0.1 0.16 12.1 0.1 1.5 1 0 0 1 1 1 0 Helicase HerA, central domain AAA_24 PF13479.6 gi|336253197|ref|YP_004596304.1| - 0.077 12.7 0.0 0.14 11.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|336253197|ref|YP_004596304.1| - 0.082 13.5 0.0 0.24 12.0 0.0 1.8 2 0 0 2 2 1 0 AAA domain MMR_HSR1 PF01926.23 gi|336253197|ref|YP_004596304.1| - 0.1 12.7 0.0 0.27 11.3 0.0 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase ABC_ATPase PF09818.9 gi|336253197|ref|YP_004596304.1| - 0.16 10.7 0.1 0.29 9.9 0.1 1.3 1 0 0 1 1 1 0 Predicted ATPase of the ABC class HTH_20 PF12840.7 gi|336253198|ref|YP_004596305.1| - 0.063 13.3 0.1 0.18 11.9 0.1 1.8 1 1 0 1 1 1 0 Helix-turn-helix domain DUF192 PF02643.15 gi|336253199|ref|YP_004596306.1| - 6e-28 96.8 0.0 7.9e-28 96.5 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 CDP-OH_P_tran_2 PF08009.11 gi|336253199|ref|YP_004596306.1| - 0.084 12.8 5.2 0.14 12.1 5.2 1.4 1 0 0 1 1 1 0 CDP-alcohol phosphatidyltransferase 2 ABC_membrane PF00664.23 gi|336253200|ref|YP_004596307.1| - 7.3e-46 157.0 1.2 9.3e-46 156.7 1.2 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 gi|336253200|ref|YP_004596307.1| - 7.4e-38 130.2 0.0 1.5e-37 129.1 0.0 1.6 1 0 0 1 1 1 1 ABC transporter AAA_22 PF13401.6 gi|336253200|ref|YP_004596307.1| - 8.3e-05 22.9 0.1 0.00038 20.7 0.1 2.0 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|336253200|ref|YP_004596307.1| - 0.00048 20.1 0.0 0.00097 19.1 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_21 PF13304.6 gi|336253200|ref|YP_004596307.1| - 0.00059 19.7 0.0 0.0016 18.3 0.0 1.7 1 1 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_24 PF13479.6 gi|336253200|ref|YP_004596307.1| - 0.0019 18.0 0.1 0.0034 17.1 0.1 1.4 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|336253200|ref|YP_004596307.1| - 0.0019 18.8 0.0 0.0047 17.5 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|336253200|ref|YP_004596307.1| - 0.0021 18.5 0.2 0.005 17.2 0.2 1.7 1 1 0 1 1 1 1 AAA ATPase domain DUF2107 PF09880.9 gi|336253200|ref|YP_004596307.1| - 0.0047 17.0 0.5 0.013 15.6 0.5 1.7 1 0 0 1 1 1 1 Predicted membrane protein (DUF2107) SMC_N PF02463.19 gi|336253200|ref|YP_004596307.1| - 0.0052 16.3 1.1 0.14 11.5 0.2 2.1 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain Zeta_toxin PF06414.12 gi|336253200|ref|YP_004596307.1| - 0.0064 15.8 0.0 0.014 14.7 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_29 PF13555.6 gi|336253200|ref|YP_004596307.1| - 0.012 15.3 0.1 0.036 13.8 0.1 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|336253200|ref|YP_004596307.1| - 0.018 14.8 0.2 0.048 13.4 0.2 1.7 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|336253200|ref|YP_004596307.1| - 0.035 14.3 0.2 0.09 12.9 0.0 1.8 2 0 0 2 2 1 0 AAA domain Guanylate_kin PF00625.21 gi|336253200|ref|YP_004596307.1| - 0.038 13.7 0.0 0.28 10.8 0.1 2.4 2 1 0 2 2 2 0 Guanylate kinase AAA_23 PF13476.6 gi|336253200|ref|YP_004596307.1| - 0.063 13.8 0.0 0.13 12.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|336253200|ref|YP_004596307.1| - 0.095 13.1 0.0 0.68 10.4 0.0 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|336253200|ref|YP_004596307.1| - 0.11 12.5 0.1 0.67 10.0 0.0 2.2 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) ABC_ATPase PF09818.9 gi|336253200|ref|YP_004596307.1| - 0.15 10.8 0.2 0.27 10.0 0.2 1.4 1 0 0 1 1 1 0 Predicted ATPase of the ABC class DUF1385 PF07136.11 gi|336253200|ref|YP_004596307.1| - 0.16 11.2 0.3 0.29 10.4 0.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1385) MMR_HSR1 PF01926.23 gi|336253200|ref|YP_004596307.1| - 0.18 11.9 0.0 0.43 10.7 0.0 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase Mg_chelatase PF01078.21 gi|336253200|ref|YP_004596307.1| - 0.19 11.1 0.0 0.35 10.2 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI DUF2157 PF09925.9 gi|336253200|ref|YP_004596307.1| - 0.54 10.0 4.9 0.82 9.5 0.1 2.8 3 0 0 3 3 3 0 Predicted membrane protein (DUF2157) Creatininase PF02633.14 gi|336253202|ref|YP_004596309.1| - 2e-70 237.0 1.0 2.3e-70 236.8 1.0 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase Alba PF01918.21 gi|336253202|ref|YP_004596309.1| - 0.14 12.0 0.0 0.21 11.5 0.0 1.3 1 0 0 1 1 1 0 Alba Phe_tRNA-synt_N PF02912.18 gi|336253203|ref|YP_004596310.1| - 0.1 12.5 0.1 0.6 10.1 0.0 2.2 2 0 0 2 2 2 0 Aminoacyl tRNA synthetase class II, N-terminal domain DHNA PF04038.12 gi|336253204|ref|YP_004596311.1| - 4.1e-40 136.6 0.0 4.7e-40 136.5 0.0 1.0 1 0 0 1 1 1 1 Dihydroneopterin aldolase Epimerase PF01370.21 gi|336253205|ref|YP_004596312.1| - 6e-26 91.4 0.0 7.5e-26 91.1 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|336253205|ref|YP_004596312.1| - 2.1e-13 49.9 0.0 2.9e-13 49.5 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.12 gi|336253205|ref|YP_004596312.1| - 2.7e-13 49.7 0.0 8.3e-13 48.1 0.0 1.6 2 0 0 2 2 2 1 Male sterility protein NAD_binding_10 PF13460.6 gi|336253205|ref|YP_004596312.1| - 2.5e-12 47.1 0.0 4.4e-12 46.3 0.0 1.3 1 1 0 1 1 1 1 NAD(P)H-binding Polysacc_synt_2 PF02719.15 gi|336253205|ref|YP_004596312.1| - 2.4e-11 43.3 0.2 1.8e-07 30.6 0.1 2.7 2 1 0 3 3 3 2 Polysaccharide biosynthesis protein GDP_Man_Dehyd PF16363.5 gi|336253205|ref|YP_004596312.1| - 9.2e-11 41.7 0.0 2.8e-10 40.1 0.0 1.9 1 1 0 2 2 2 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|336253205|ref|YP_004596312.1| - 6.9e-05 22.1 0.0 0.00016 20.9 0.0 1.5 1 1 0 1 1 1 1 RmlD substrate binding domain NmrA PF05368.13 gi|336253205|ref|YP_004596312.1| - 9.2e-05 22.1 0.0 0.00017 21.3 0.0 1.4 1 0 0 1 1 1 1 NmrA-like family zf-FCS PF06467.14 gi|336253206|ref|YP_004596313.1| - 0.008 16.1 0.9 0.056 13.4 0.9 1.9 1 1 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif OrfB_Zn_ribbon PF07282.11 gi|336253206|ref|YP_004596313.1| - 0.051 13.5 0.2 0.052 13.5 0.2 1.0 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DUF309 PF03745.14 gi|336253207|ref|YP_004596314.1| - 4.1e-18 64.8 4.1 6e-18 64.3 4.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF309) Peptidase_M29 PF02073.15 gi|336253208|ref|YP_004596315.1| - 9.7e-62 209.0 0.0 1.1e-61 208.8 0.0 1.0 1 0 0 1 1 1 1 Thermophilic metalloprotease (M29) Vut_1 PF02592.15 gi|336253209|ref|YP_004596316.1| - 1.6e-50 171.3 8.9 1.6e-50 171.3 8.9 1.4 2 0 0 2 2 2 1 Putative vitamin uptake transporter CSD PF00313.22 gi|336253210|ref|YP_004596317.1| - 6.3e-19 67.6 0.1 7e-19 67.5 0.1 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain OB_RNB PF08206.11 gi|336253210|ref|YP_004596317.1| - 0.052 13.2 1.9 0.073 12.8 1.9 1.3 1 0 0 1 1 1 0 Ribonuclease B OB domain S1-like PF14444.6 gi|336253210|ref|YP_004596317.1| - 0.076 13.0 0.2 0.086 12.8 0.2 1.3 1 1 0 1 1 1 0 S1-like PadR PF03551.14 gi|336253211|ref|YP_004596318.1| - 4.8e-13 48.9 0.1 5.7e-13 48.6 0.1 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.6 gi|336253211|ref|YP_004596318.1| - 0.0013 18.7 0.0 0.0017 18.3 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DUF1495 PF07381.11 gi|336253211|ref|YP_004596318.1| - 0.0028 17.4 0.0 0.0036 17.1 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) FUR PF01475.19 gi|336253211|ref|YP_004596318.1| - 0.063 13.4 0.0 0.071 13.3 0.0 1.1 1 0 0 1 1 1 0 Ferric uptake regulator family TrmB PF01978.19 gi|336253211|ref|YP_004596318.1| - 0.1 12.5 0.0 0.14 12.1 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|336253211|ref|YP_004596318.1| - 0.11 12.4 0.3 3.1 7.8 0.1 2.5 2 1 0 2 2 2 0 MarR family TFX_C PF14601.6 gi|336253212|ref|YP_004596319.1| - 4.2e-31 106.8 0.0 5.7e-31 106.3 0.0 1.2 1 0 0 1 1 1 1 DNA_binding protein, TFX, C-term Sigma70_r4 PF04545.16 gi|336253212|ref|YP_004596319.1| - 1e-06 28.2 0.2 2e-06 27.2 0.2 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_19 PF12844.7 gi|336253212|ref|YP_004596319.1| - 2.2e-05 24.4 0.0 5.2e-05 23.2 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|336253212|ref|YP_004596319.1| - 4e-05 23.9 2.8 8.9e-05 22.8 2.8 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain GerE PF00196.19 gi|336253212|ref|YP_004596319.1| - 0.00019 20.9 0.1 0.00028 20.4 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_3 PF01381.22 gi|336253212|ref|YP_004596319.1| - 0.00052 20.0 0.2 0.0011 19.0 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix Sigma70_r4_2 PF08281.12 gi|336253212|ref|YP_004596319.1| - 0.0031 17.2 0.1 0.0054 16.4 0.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.6 gi|336253212|ref|YP_004596319.1| - 0.0066 16.2 0.1 0.012 15.4 0.1 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_7 PF02796.15 gi|336253212|ref|YP_004596319.1| - 0.011 15.7 0.0 0.021 14.9 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase HTH_Crp_2 PF13545.6 gi|336253212|ref|YP_004596319.1| - 0.023 14.7 0.1 0.044 13.8 0.1 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_38 PF13936.6 gi|336253212|ref|YP_004596319.1| - 0.045 13.5 0.1 0.082 12.7 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain TAL_effector PF03377.13 gi|336253212|ref|YP_004596319.1| - 0.045 14.1 0.2 0.17 12.2 0.0 2.0 2 0 0 2 2 2 0 TAL effector repeat HTH_24 PF13412.6 gi|336253212|ref|YP_004596319.1| - 0.047 13.2 0.1 0.086 12.4 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|336253212|ref|YP_004596319.1| - 0.061 13.2 0.2 0.17 11.8 0.2 1.7 1 1 0 1 1 1 0 MarR family RepB PF07506.11 gi|336253212|ref|YP_004596319.1| - 0.072 13.2 0.1 0.11 12.6 0.1 1.2 1 0 0 1 1 1 0 RepB plasmid partitioning protein HTH_37 PF13744.6 gi|336253212|ref|YP_004596319.1| - 0.096 12.7 0.0 0.16 12.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain TRAM PF01938.20 gi|336253213|ref|YP_004596320.1| - 1.4e-08 34.6 0.0 2e-08 34.1 0.0 1.2 1 0 0 1 1 1 1 TRAM domain FYDLN_acid PF09538.10 gi|336253213|ref|YP_004596320.1| - 0.026 15.2 6.6 0.55 10.9 6.7 2.1 2 0 0 2 2 2 0 Protein of unknown function (FYDLN_acid) CDC45 PF02724.14 gi|336253213|ref|YP_004596320.1| - 0.28 9.4 3.2 0.29 9.4 3.2 1.1 1 0 0 1 1 1 0 CDC45-like protein ETF PF01012.21 gi|336253214|ref|YP_004596321.1| - 8.7e-40 136.5 1.9 8.7e-40 136.5 1.9 1.4 2 0 0 2 2 2 1 Electron transfer flavoprotein domain ETF_alpha PF00766.19 gi|336253215|ref|YP_004596322.1| - 8.8e-36 121.8 0.1 1.7e-35 120.9 0.1 1.5 1 0 0 1 1 1 1 Electron transfer flavoprotein FAD-binding domain ETF PF01012.21 gi|336253215|ref|YP_004596322.1| - 4.4e-33 114.7 3.0 6.6e-33 114.1 3.0 1.2 1 0 0 1 1 1 1 Electron transfer flavoprotein domain PBP_like PF12727.7 gi|336253215|ref|YP_004596322.1| - 0.032 13.4 0.1 1.1 8.4 0.0 2.2 2 0 0 2 2 2 0 PBP superfamily domain MCPsignal PF00015.21 gi|336253216|ref|YP_004596323.1| - 5.8e-34 117.4 60.5 8.7e-34 116.8 24.1 4.5 1 1 3 4 4 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 gi|336253216|ref|YP_004596323.1| - 1.2e-10 41.6 13.8 7.2e-09 35.9 0.0 5.0 6 1 0 6 6 6 2 HAMP domain DUF948 PF06103.11 gi|336253216|ref|YP_004596323.1| - 0.00026 21.2 41.5 0.0057 16.9 3.3 6.5 2 2 3 6 6 6 3 Bacterial protein of unknown function (DUF948) LMBR1 PF04791.16 gi|336253216|ref|YP_004596323.1| - 0.002 17.1 4.2 0.002 17.1 4.2 2.5 1 1 1 2 2 2 1 LMBR1-like membrane protein Laminin_II PF06009.12 gi|336253216|ref|YP_004596323.1| - 0.021 14.8 48.6 0.15 12.0 3.3 6.0 2 1 3 6 6 6 0 Laminin Domain II Spc7 PF08317.11 gi|336253216|ref|YP_004596323.1| - 0.096 11.6 46.5 0.21 10.4 12.8 3.5 1 1 2 3 3 3 0 Spc7 kinetochore protein DUF1664 PF07889.12 gi|336253216|ref|YP_004596323.1| - 0.22 11.5 33.5 0.026 14.5 2.5 5.5 2 2 5 7 7 7 0 Protein of unknown function (DUF1664) GM_CSF PF01109.17 gi|336253216|ref|YP_004596323.1| - 0.34 11.1 1.1 1.3 9.2 1.1 2.0 1 0 0 1 1 1 0 Granulocyte-macrophage colony-stimulating factor DUF2203 PF09969.9 gi|336253216|ref|YP_004596323.1| - 0.57 10.9 38.0 0.21 12.3 3.1 5.2 2 2 3 5 5 5 0 Uncharacterized conserved protein (DUF2203) MAD PF05557.13 gi|336253216|ref|YP_004596323.1| - 1.3 7.3 44.3 0.025 13.0 23.0 2.2 1 1 1 2 2 2 0 Mitotic checkpoint protein Med9 PF07544.13 gi|336253216|ref|YP_004596323.1| - 1.5 9.0 12.9 0.6 10.2 1.0 4.1 4 0 0 4 4 4 0 RNA polymerase II transcription mediator complex subunit 9 Syntaxin_2 PF14523.6 gi|336253216|ref|YP_004596323.1| - 2.2 8.7 16.2 33 4.9 0.0 5.4 1 1 3 4 4 4 0 Syntaxin-like protein Seryl_tRNA_N PF02403.22 gi|336253216|ref|YP_004596323.1| - 3.1 8.1 40.9 2.2 8.5 1.4 5.8 2 2 2 5 5 5 0 Seryl-tRNA synthetase N-terminal domain ERM PF00769.19 gi|336253216|ref|YP_004596323.1| - 3.2 7.5 63.3 0.034 14.0 15.5 3.4 1 1 2 3 3 3 0 Ezrin/radixin/moesin family TMPIT PF07851.13 gi|336253216|ref|YP_004596323.1| - 3.7 6.7 28.8 0.2 10.8 3.0 4.3 1 1 3 5 5 5 0 TMPIT-like protein XH PF03469.14 gi|336253216|ref|YP_004596323.1| - 4.7 7.1 6.2 6.3 6.7 0.3 2.9 2 0 0 2 2 2 0 XH domain Fib_alpha PF08702.10 gi|336253216|ref|YP_004596323.1| - 4.9 7.3 26.8 2.5 8.3 3.4 4.7 2 2 3 5 5 5 0 Fibrinogen alpha/beta chain family NPV_P10 PF05531.12 gi|336253216|ref|YP_004596323.1| - 7.5 7.1 27.1 1.6 9.3 1.5 6.2 2 2 4 6 6 6 0 Nucleopolyhedrovirus P10 protein TMP_2 PF06791.13 gi|336253216|ref|YP_004596323.1| - 7.5 6.2 39.0 3.4 7.3 13.8 3.9 2 2 1 3 3 3 0 Prophage tail length tape measure protein polyprenyl_synt PF00348.17 gi|336253217|ref|YP_004596324.1| - 6.5e-54 182.7 0.0 7.8e-54 182.4 0.0 1.0 1 0 0 1 1 1 1 Polyprenyl synthetase DUF373 PF04123.13 gi|336253218|ref|YP_004596325.1| - 5.3e-119 397.6 6.2 6.1e-119 397.4 6.2 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) EI24 PF07264.11 gi|336253218|ref|YP_004596325.1| - 1.3 9.3 7.6 12 6.1 7.7 2.0 1 1 0 1 1 1 0 Etoposide-induced protein 2.4 (EI24) Radical_SAM PF04055.21 gi|336253220|ref|YP_004596327.1| - 2.6e-06 27.9 2.7 0.00026 21.4 0.2 2.8 2 1 0 2 2 2 2 Radical SAM superfamily Fer4_14 PF13394.6 gi|336253220|ref|YP_004596327.1| - 0.00011 22.3 0.1 0.0002 21.5 0.1 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|336253220|ref|YP_004596327.1| - 0.07 13.4 0.1 0.16 12.2 0.1 1.6 1 0 0 1 1 1 0 4Fe-4S single cluster domain HypA PF01155.19 gi|336253221|ref|YP_004596328.1| - 0.0038 17.2 0.4 0.0047 16.9 0.4 1.2 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA ArfGap PF01412.18 gi|336253221|ref|YP_004596328.1| - 0.011 15.8 0.3 0.014 15.5 0.3 1.1 1 0 0 1 1 1 0 Putative GTPase activating protein for Arf Rubredoxin_2 PF18073.1 gi|336253221|ref|YP_004596328.1| - 0.028 14.1 2.8 3.1 7.6 0.2 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain zinc-ribbon_6 PF10005.9 gi|336253221|ref|YP_004596328.1| - 0.031 14.9 0.0 0.04 14.6 0.0 1.1 1 0 0 1 1 1 0 zinc-ribbon domain Nudix_N_2 PF14803.6 gi|336253221|ref|YP_004596328.1| - 0.037 14.0 0.6 1.2 9.1 0.1 2.4 2 0 0 2 2 2 0 Nudix N-terminal TF_Zn_Ribbon PF08271.12 gi|336253221|ref|YP_004596328.1| - 0.052 13.1 7.0 1.3 8.6 0.6 2.9 1 1 2 3 3 3 0 TFIIB zinc-binding zf_UBZ PF18439.1 gi|336253221|ref|YP_004596328.1| - 0.075 12.6 0.3 5 6.8 0.1 2.2 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger DUF1258 PF06869.12 gi|336253221|ref|YP_004596328.1| - 0.098 12.1 0.2 0.11 11.9 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1258) zinc_ribbon_2 PF13240.6 gi|336253221|ref|YP_004596328.1| - 0.24 11.2 3.6 0.36 10.6 3.6 1.3 1 0 0 1 1 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|336253221|ref|YP_004596328.1| - 0.44 10.7 2.0 1.2 9.3 2.0 1.7 1 1 0 1 1 1 0 Zinc ribbon domain HTH_IclR PF09339.10 gi|336253222|ref|YP_004596329.1| - 0.058 13.2 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain MDMPI_N PF11716.8 gi|336253223|ref|YP_004596330.1| - 0.033 14.9 0.9 0.069 13.8 0.9 1.5 1 0 0 1 1 1 0 Mycothiol maleylpyruvate isomerase N-terminal domain Pilin_N PF07790.11 gi|336253224|ref|YP_004596331.1| - 3e-09 37.7 2.5 4.6e-09 37.1 2.5 1.3 1 0 0 1 1 1 1 Archaeal Type IV pilin, N-terminal Methyltransf_11 PF08241.12 gi|336253225|ref|YP_004596332.1| - 8.5e-25 87.2 0.0 1.4e-24 86.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|336253225|ref|YP_004596332.1| - 1.3e-24 86.7 0.0 1.9e-24 86.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|336253225|ref|YP_004596332.1| - 6.1e-19 68.3 0.0 3.1e-14 52.9 0.0 2.1 1 1 1 2 2 2 2 ubiE/COQ5 methyltransferase family Methyltransf_31 PF13847.6 gi|336253225|ref|YP_004596332.1| - 7.3e-19 68.1 0.0 8.7e-19 67.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|336253225|ref|YP_004596332.1| - 2.3e-15 57.1 0.0 3.3e-15 56.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|336253225|ref|YP_004596332.1| - 3.4e-15 56.3 0.0 4.8e-15 55.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|336253225|ref|YP_004596332.1| - 6.9e-07 29.2 0.0 8.7e-07 28.9 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_9 PF08003.11 gi|336253225|ref|YP_004596332.1| - 3e-05 23.1 0.0 4e-05 22.7 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) RrnaAD PF00398.20 gi|336253225|ref|YP_004596332.1| - 3.1e-05 23.2 0.0 3.9e-05 22.9 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_29 PF03141.16 gi|336253225|ref|YP_004596332.1| - 4.8e-05 22.1 0.0 6.1e-05 21.8 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase MetW PF07021.12 gi|336253225|ref|YP_004596332.1| - 0.00032 20.4 0.0 0.00041 20.0 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW MTS PF05175.14 gi|336253225|ref|YP_004596332.1| - 0.00042 19.9 0.0 0.0017 18.0 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase small domain CMAS PF02353.20 gi|336253225|ref|YP_004596332.1| - 0.0038 16.5 0.0 0.0057 16.0 0.0 1.4 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase DREV PF05219.12 gi|336253225|ref|YP_004596332.1| - 0.0041 16.2 0.0 0.0064 15.6 0.0 1.4 1 1 0 1 1 1 1 DREV methyltransferase Methyltransf_2 PF00891.18 gi|336253225|ref|YP_004596332.1| - 0.005 16.2 0.0 0.01 15.1 0.0 1.4 1 1 0 1 1 1 1 O-methyltransferase domain Methyltransf_33 PF10017.9 gi|336253225|ref|YP_004596332.1| - 0.035 13.3 0.0 0.093 11.9 0.0 1.6 2 1 0 2 2 2 0 Histidine-specific methyltransferase, SAM-dependent Methyltransf_32 PF13679.6 gi|336253225|ref|YP_004596332.1| - 0.057 13.4 0.0 0.075 13.0 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain FtsJ PF01728.19 gi|336253225|ref|YP_004596332.1| - 0.058 13.5 0.0 0.074 13.1 0.0 1.4 1 0 0 1 1 1 0 FtsJ-like methyltransferase Methyltransf_PK PF05891.12 gi|336253225|ref|YP_004596332.1| - 0.064 12.8 0.0 0.077 12.5 0.0 1.1 1 0 0 1 1 1 0 AdoMet dependent proline di-methyltransferase Methyltransf_8 PF05148.15 gi|336253225|ref|YP_004596332.1| - 0.074 12.9 0.0 0.44 10.4 0.0 1.9 1 1 0 1 1 1 0 Hypothetical methyltransferase NodS PF05401.11 gi|336253225|ref|YP_004596332.1| - 0.13 11.8 0.0 0.17 11.5 0.0 1.1 1 0 0 1 1 1 0 Nodulation protein S (NodS) ATP-synt_B PF00430.18 gi|336253226|ref|YP_004596333.1| - 2.3e-05 24.5 20.4 3.3e-05 24.0 20.4 1.3 1 0 0 1 1 1 1 ATP synthase B/B' CF(0) V-ATPase_G_2 PF16999.5 gi|336253226|ref|YP_004596333.1| - 7e-05 23.2 25.3 0.00011 22.6 25.3 1.3 1 1 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit vATP-synt_E PF01991.18 gi|336253226|ref|YP_004596333.1| - 0.0013 18.2 13.3 0.0013 18.2 13.3 2.2 1 1 1 2 2 2 1 ATP synthase (E/31 kDa) subunit V-ATPase_G PF03179.15 gi|336253226|ref|YP_004596333.1| - 0.0013 19.2 20.6 0.059 13.9 20.0 2.1 1 1 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit HrpE PF06188.12 gi|336253226|ref|YP_004596333.1| - 0.0062 16.4 12.5 0.012 15.5 12.5 1.5 1 1 0 1 1 1 1 HrpE/YscL/FliH and V-type ATPase subunit E DUF883 PF05957.13 gi|336253226|ref|YP_004596333.1| - 0.008 16.8 17.7 0.42 11.2 7.0 2.1 1 1 1 2 2 2 2 Bacterial protein of unknown function (DUF883) DivIVA PF05103.13 gi|336253226|ref|YP_004596333.1| - 0.01 15.9 16.2 0.43 10.7 0.9 2.0 1 1 1 2 2 2 0 DivIVA protein DUF3552 PF12072.8 gi|336253226|ref|YP_004596333.1| - 0.022 14.1 26.1 0.24 10.8 19.5 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF3552) PIN_8 PF18476.1 gi|336253226|ref|YP_004596333.1| - 0.058 13.2 6.4 0.064 13.1 6.4 1.1 1 0 0 1 1 1 0 PIN like domain dCache_2 PF08269.11 gi|336253226|ref|YP_004596333.1| - 0.072 12.3 2.4 0.059 12.5 1.3 1.4 1 1 0 1 1 1 0 Cache domain Apolipoprotein PF01442.18 gi|336253226|ref|YP_004596333.1| - 0.08 12.8 22.5 0.11 12.3 22.5 1.2 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain DUF3435 PF11917.8 gi|336253226|ref|YP_004596333.1| - 0.3 10.0 8.7 0.34 9.8 8.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3435) DUF4407 PF14362.6 gi|336253226|ref|YP_004596333.1| - 0.4 10.0 11.4 0.44 9.8 11.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) Inositol_P PF00459.25 gi|336253226|ref|YP_004596333.1| - 0.43 10.1 5.0 0.46 10.0 5.0 1.1 1 0 0 1 1 1 0 Inositol monophosphatase family YtxH PF12732.7 gi|336253226|ref|YP_004596333.1| - 0.49 11.0 10.8 1.6 9.3 0.6 2.3 1 1 1 2 2 2 0 YtxH-like protein Histidinol_dh PF00815.20 gi|336253226|ref|YP_004596333.1| - 0.61 9.0 6.6 0.67 8.9 6.6 1.0 1 0 0 1 1 1 0 Histidinol dehydrogenase GBP_C PF02841.14 gi|336253226|ref|YP_004596333.1| - 0.71 9.2 13.4 0.79 9.1 13.4 1.0 1 0 0 1 1 1 0 Guanylate-binding protein, C-terminal domain Golgin_A5 PF09787.9 gi|336253226|ref|YP_004596333.1| - 0.74 9.2 15.6 0.86 9.0 15.6 1.0 1 0 0 1 1 1 0 Golgin subfamily A member 5 Remorin_C PF03763.13 gi|336253226|ref|YP_004596333.1| - 0.74 9.7 16.3 0.21 11.5 5.2 2.1 1 1 1 2 2 2 0 Remorin, C-terminal region Merozoite_SPAM PF07133.11 gi|336253226|ref|YP_004596333.1| - 0.88 9.5 20.9 1.1 9.2 20.9 1.1 1 0 0 1 1 1 0 Merozoite surface protein (SPAM) CdvA PF18822.1 gi|336253226|ref|YP_004596333.1| - 0.99 9.2 13.4 0.81 9.5 1.8 2.1 1 1 1 2 2 2 0 CdvA-like coiled-coil domain Caudo_TAP PF02413.17 gi|336253226|ref|YP_004596333.1| - 1 9.5 12.8 2.2 8.4 8.7 2.5 1 1 1 2 2 2 0 Caudovirales tail fibre assembly protein, lambda gpK Peptidase_M41 PF01434.18 gi|336253226|ref|YP_004596333.1| - 1.3 8.8 8.0 1.2 9.0 0.8 2.0 1 1 1 2 2 2 0 Peptidase family M41 Borrelia_P83 PF05262.11 gi|336253226|ref|YP_004596333.1| - 1.6 7.1 12.7 1.8 6.9 12.7 1.0 1 0 0 1 1 1 0 Borrelia P83/100 protein OmpH PF03938.14 gi|336253226|ref|YP_004596333.1| - 2.4 8.5 12.9 3.5 8.0 12.9 1.3 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) HSP70 PF00012.20 gi|336253226|ref|YP_004596333.1| - 7 4.7 12.5 8.5 4.4 12.5 1.0 1 0 0 1 1 1 0 Hsp70 protein V_ATPase_I PF01496.19 gi|336253227|ref|YP_004596334.1| - 1.5e-23 82.7 10.6 5.1e-11 41.3 1.8 5.1 4 2 0 5 5 5 3 V-type ATPase 116kDa subunit family Prefoldin_2 PF01920.20 gi|336253227|ref|YP_004596334.1| - 0.0011 18.9 0.9 0.2 11.6 0.2 2.3 2 0 0 2 2 2 1 Prefoldin subunit FlaC_arch PF05377.11 gi|336253227|ref|YP_004596334.1| - 0.0019 18.5 1.9 0.13 12.6 0.1 2.9 3 0 0 3 3 2 1 Flagella accessory protein C (FlaC) Tektin PF03148.14 gi|336253227|ref|YP_004596334.1| - 0.0054 15.5 0.6 0.069 11.9 0.1 2.0 2 0 0 2 2 2 1 Tektin family DUF4140 PF13600.6 gi|336253227|ref|YP_004596334.1| - 0.07 13.6 6.2 1.6 9.2 2.6 2.6 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) Spc24 PF08286.11 gi|336253227|ref|YP_004596334.1| - 0.074 13.3 2.4 3.4 8.0 0.1 2.4 2 0 0 2 2 2 0 Spc24 subunit of Ndc80 MscS_porin PF12795.7 gi|336253227|ref|YP_004596334.1| - 0.081 12.5 2.1 0.39 10.2 0.4 2.1 2 0 0 2 2 2 0 Mechanosensitive ion channel porin domain DUF3450 PF11932.8 gi|336253227|ref|YP_004596334.1| - 0.093 12.0 0.4 1.6 8.0 0.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) EMP24_GP25L PF01105.24 gi|336253227|ref|YP_004596334.1| - 0.11 12.4 0.4 0.77 9.7 0.0 2.1 2 0 0 2 2 2 0 emp24/gp25L/p24 family/GOLD CENP-F_leu_zip PF10473.9 gi|336253227|ref|YP_004596334.1| - 0.15 12.1 6.1 1.8 8.6 0.5 2.3 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF1664 PF07889.12 gi|336253227|ref|YP_004596334.1| - 0.16 12.0 1.1 6.7 6.8 0.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) Spc7 PF08317.11 gi|336253227|ref|YP_004596334.1| - 0.36 9.7 2.8 0.85 8.4 0.2 2.0 2 0 0 2 2 2 0 Spc7 kinetochore protein Apolipoprotein PF01442.18 gi|336253227|ref|YP_004596334.1| - 0.62 9.9 6.3 0.44 10.4 1.8 2.1 2 0 0 2 2 2 0 Apolipoprotein A1/A4/E domain XhlA PF10779.9 gi|336253227|ref|YP_004596334.1| - 0.67 10.2 5.4 2.8 8.2 1.5 2.7 2 0 0 2 2 2 0 Haemolysin XhlA Helo_like_N PF17111.5 gi|336253227|ref|YP_004596334.1| - 1 8.7 2.5 1.3 8.3 0.1 2.0 2 0 0 2 2 2 0 Fungal N-terminal domain of STAND proteins Filament PF00038.21 gi|336253227|ref|YP_004596334.1| - 2.1 7.9 6.3 13 5.2 6.3 1.9 1 1 0 1 1 1 0 Intermediate filament protein Ax_dynein_light PF10211.9 gi|336253227|ref|YP_004596334.1| - 2.3 8.1 4.5 18 5.2 0.3 2.1 2 0 0 2 2 2 0 Axonemal dynein light chain CCDC-167 PF15188.6 gi|336253227|ref|YP_004596334.1| - 5.4 7.4 5.2 24 5.4 0.4 2.5 2 0 0 2 2 2 0 Coiled-coil domain-containing protein 167 ATP-synt_C PF00137.21 gi|336253228|ref|YP_004596335.1| - 4.2e-13 49.4 8.0 5.4e-13 49.1 8.0 1.2 1 0 0 1 1 1 1 ATP synthase subunit C vATP-synt_E PF01991.18 gi|336253229|ref|YP_004596336.1| - 1.5e-41 142.0 10.1 2.1e-41 141.6 10.1 1.2 1 0 0 1 1 1 1 ATP synthase (E/31 kDa) subunit V_ATPase_I PF01496.19 gi|336253229|ref|YP_004596336.1| - 0.0057 14.7 1.6 0.0061 14.6 1.6 1.0 1 0 0 1 1 1 1 V-type ATPase 116kDa subunit family DUF3535 PF12054.8 gi|336253229|ref|YP_004596336.1| - 0.088 12.0 1.7 0.12 11.6 1.7 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3535) Peptidase_C58 PF03543.14 gi|336253229|ref|YP_004596336.1| - 0.16 11.6 1.7 0.24 11.1 1.7 1.3 1 0 0 1 1 1 0 Yersinia/Haemophilus virulence surface antigen OmpH PF03938.14 gi|336253229|ref|YP_004596336.1| - 0.23 11.8 9.0 0.41 11.0 9.0 1.5 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) HAUS5 PF14817.6 gi|336253229|ref|YP_004596336.1| - 0.28 9.9 10.3 0.36 9.5 10.3 1.1 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 5 Nbl1_Borealin_N PF10444.9 gi|336253229|ref|YP_004596336.1| - 0.3 10.8 7.5 0.22 11.2 0.3 2.6 1 1 1 2 2 2 0 Nbl1 / Borealin N terminal HAUS-augmin3 PF14932.6 gi|336253229|ref|YP_004596336.1| - 0.4 10.2 9.6 0.57 9.7 9.6 1.2 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 3 V-ATPase_G PF03179.15 gi|336253229|ref|YP_004596336.1| - 0.49 11.0 14.5 0.23 12.0 12.1 1.7 1 1 0 1 1 1 0 Vacuolar (H+)-ATPase G subunit HSP70 PF00012.20 gi|336253229|ref|YP_004596336.1| - 2.1 6.4 8.0 2.4 6.2 8.0 1.1 1 0 0 1 1 1 0 Hsp70 protein MRP-S26 PF14943.6 gi|336253229|ref|YP_004596336.1| - 3.6 7.5 13.1 5.7 6.8 13.1 1.3 1 0 0 1 1 1 0 Mitochondrial ribosome subunit S26 Phasin PF05597.11 gi|336253229|ref|YP_004596336.1| - 4.1 7.4 13.3 2.9 7.9 7.0 2.5 2 1 1 3 3 3 0 Poly(hydroxyalcanoate) granule associated protein (phasin) DUF883 PF05957.13 gi|336253229|ref|YP_004596336.1| - 6.1 7.5 15.8 2.7 8.7 2.2 2.8 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) vATP-synt_AC39 PF01992.16 gi|336253230|ref|YP_004596337.1| - 8.1e-82 275.4 5.9 9.1e-82 275.2 5.9 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit ATP-synt_F PF01990.17 gi|336253231|ref|YP_004596338.1| - 2.6e-15 56.5 0.1 3e-15 56.3 0.1 1.1 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit ATP-synt_ab PF00006.25 gi|336253232|ref|YP_004596339.1| - 3.3e-92 308.0 0.0 4.3e-92 307.6 0.0 1.1 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_Xtn PF16886.5 gi|336253232|ref|YP_004596339.1| - 1.8e-39 134.4 0.1 3.1e-39 133.6 0.1 1.4 1 0 0 1 1 1 1 ATPsynthase alpha/beta subunit N-term extension ATP-synt_ab_N PF02874.23 gi|336253232|ref|YP_004596339.1| - 1.1e-11 45.1 3.9 1.1e-11 45.1 3.9 2.3 3 0 0 3 3 3 1 ATP synthase alpha/beta family, beta-barrel domain AAA_22 PF13401.6 gi|336253232|ref|YP_004596339.1| - 0.027 14.8 0.0 0.08 13.2 0.0 1.8 1 0 0 1 1 1 0 AAA domain QRPTase_N PF02749.16 gi|336253232|ref|YP_004596339.1| - 0.15 12.1 0.3 16 5.7 0.0 2.8 3 0 0 3 3 3 0 Quinolinate phosphoribosyl transferase, N-terminal domain Npun_R1517 PF18068.1 gi|336253232|ref|YP_004596339.1| - 0.15 12.4 0.0 0.45 10.9 0.0 1.7 1 0 0 1 1 1 0 Npun R1517 ATP-synt_ab PF00006.25 gi|336253233|ref|YP_004596340.1| - 7.7e-66 221.8 0.0 1.2e-65 221.2 0.0 1.3 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_N PF02874.23 gi|336253233|ref|YP_004596340.1| - 5.5e-14 52.4 1.2 1.5e-13 51.0 1.2 1.8 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.10 gi|336253233|ref|YP_004596340.1| - 0.0013 18.8 0.5 0.0042 17.2 0.5 2.0 1 0 0 1 1 1 1 HAS barrel domain zinc_ribbon_13 PF09855.9 gi|336253235|ref|YP_004596342.1| - 4.1e-29 100.5 0.4 4.5e-29 100.4 0.4 1.0 1 0 0 1 1 1 1 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Lar_restr_allev PF14354.6 gi|336253235|ref|YP_004596342.1| - 0.0012 19.1 0.3 0.0016 18.8 0.3 1.2 1 0 0 1 1 1 1 Restriction alleviation protein Lar TF_Zn_Ribbon PF08271.12 gi|336253235|ref|YP_004596342.1| - 0.0026 17.2 0.6 0.32 10.5 0.1 2.2 2 0 0 2 2 2 1 TFIIB zinc-binding zinc_ribbon_2 PF13240.6 gi|336253235|ref|YP_004596342.1| - 0.0049 16.5 3.4 1 9.1 0.5 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|336253235|ref|YP_004596342.1| - 0.005 16.2 2.3 0.56 9.7 0.2 2.2 2 0 0 2 2 2 2 zinc-ribbon domain TFIIS_C PF01096.18 gi|336253235|ref|YP_004596342.1| - 0.0056 16.5 1.2 0.87 9.5 0.1 2.3 2 0 0 2 2 2 1 Transcription factor S-II (TFIIS) A2L_zn_ribbon PF08792.10 gi|336253235|ref|YP_004596342.1| - 0.0062 16.2 0.6 1.9 8.3 0.0 2.3 2 0 0 2 2 2 2 A2L zinc ribbon domain CpXC PF14353.6 gi|336253235|ref|YP_004596342.1| - 0.007 16.4 0.1 0.01 15.9 0.1 1.2 1 0 0 1 1 1 1 CpXC protein DUF2387 PF09526.10 gi|336253235|ref|YP_004596342.1| - 0.0093 16.1 1.2 0.53 10.5 1.2 2.1 1 1 0 1 1 1 1 Probable metal-binding protein (DUF2387) Zn_Tnp_IS1595 PF12760.7 gi|336253235|ref|YP_004596342.1| - 0.011 15.7 2.9 1.6 8.8 0.5 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain DZR PF12773.7 gi|336253235|ref|YP_004596342.1| - 0.014 15.4 0.2 0.019 15.0 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|336253235|ref|YP_004596342.1| - 0.015 15.4 0.8 0.92 9.7 0.3 2.3 2 0 0 2 2 2 0 Zinc ribbon domain zf-IS66 PF13005.7 gi|336253235|ref|YP_004596342.1| - 0.016 15.6 1.4 0.09 13.2 0.0 2.1 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 Ribosomal_S27e PF01667.17 gi|336253235|ref|YP_004596342.1| - 0.047 13.4 0.9 3.5 7.4 0.1 2.1 2 0 0 2 2 2 0 Ribosomal protein S27 Elf1 PF05129.13 gi|336253235|ref|YP_004596342.1| - 0.074 13.1 0.6 0.3 11.2 0.6 1.8 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like DNA_RNApol_7kD PF03604.13 gi|336253235|ref|YP_004596342.1| - 0.11 12.1 2.8 1 9.1 0.1 2.2 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit GcpE PF04551.14 gi|336253235|ref|YP_004596342.1| - 0.12 11.5 0.5 1.7 7.7 0.0 1.9 1 1 1 2 2 2 0 GcpE protein Zn_Tnp_IS91 PF14319.6 gi|336253235|ref|YP_004596342.1| - 0.21 11.7 2.3 2.8 8.0 0.2 2.1 1 1 1 2 2 2 0 Transposase zinc-binding domain OrfB_Zn_ribbon PF07282.11 gi|336253235|ref|YP_004596342.1| - 0.42 10.6 2.4 3.7 7.5 2.4 2.0 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zinc_ribbon_4 PF13717.6 gi|336253235|ref|YP_004596342.1| - 0.72 9.8 5.7 7.2 6.6 0.3 2.4 2 1 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.9 gi|336253235|ref|YP_004596342.1| - 0.91 9.7 5.5 12 6.1 1.2 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-HYPF PF07503.12 gi|336253235|ref|YP_004596342.1| - 5.8 6.8 8.6 1 9.2 0.8 2.5 2 1 0 2 2 2 0 HypF finger ATP-synt_D PF01813.17 gi|336253236|ref|YP_004596343.1| - 4.5e-53 180.0 8.8 4.5e-53 180.0 8.8 1.5 2 0 0 2 2 2 1 ATP synthase subunit D DUF1168 PF06658.12 gi|336253236|ref|YP_004596343.1| - 2.4 8.0 18.3 4.2 7.2 15.3 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1168) RICH PF05062.12 gi|336253236|ref|YP_004596343.1| - 4.5 7.7 14.2 1.3e+02 3.0 14.2 2.7 1 1 0 1 1 1 0 RICH domain DZR PF12773.7 gi|336253237|ref|YP_004596344.1| - 0.25 11.4 2.5 0.56 10.3 2.5 1.6 1 1 0 1 1 1 0 Double zinc ribbon zf-TFIIB PF13453.6 gi|336253237|ref|YP_004596344.1| - 0.27 10.6 1.3 9.3 5.7 0.1 2.3 2 0 0 2 2 2 0 Transcription factor zinc-finger Zn-ribbon_8 PF09723.10 gi|336253237|ref|YP_004596344.1| - 0.42 10.8 2.4 15 5.8 0.2 2.4 2 0 0 2 2 2 0 Zinc ribbon domain PvlArgDC PF01862.16 gi|336253239|ref|YP_004596346.1| - 1.3e-38 132.4 0.1 1.4e-38 132.2 0.1 1.0 1 0 0 1 1 1 1 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) AAA PF00004.29 gi|336253240|ref|YP_004596347.1| - 5.2e-45 153.1 1.1 1.1e-44 152.1 0.1 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|336253240|ref|YP_004596347.1| - 8e-16 57.6 0.3 2.9e-15 55.8 0.3 2.0 1 0 0 1 1 1 1 AAA+ lid domain AAA_2 PF07724.14 gi|336253240|ref|YP_004596347.1| - 1.7e-08 34.8 0.0 4.8e-08 33.3 0.0 1.8 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.12 gi|336253240|ref|YP_004596347.1| - 9.4e-07 28.7 0.0 4.3e-06 26.6 0.0 2.1 2 0 0 2 2 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_5 PF07728.14 gi|336253240|ref|YP_004596347.1| - 2.1e-06 27.8 2.1 5.1e-06 26.5 0.2 2.6 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|336253240|ref|YP_004596347.1| - 8.3e-06 26.3 1.8 0.00016 22.1 0.1 3.1 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|336253240|ref|YP_004596347.1| - 2.6e-05 24.5 2.6 0.0011 19.3 0.5 3.1 2 1 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|336253240|ref|YP_004596347.1| - 5e-05 23.8 0.4 0.0043 17.6 0.0 2.6 2 1 0 2 2 2 1 AAA domain Prot_ATP_ID_OB PF16450.5 gi|336253240|ref|YP_004596347.1| - 6e-05 22.9 2.8 6.2e-05 22.9 1.1 2.0 2 0 0 2 2 1 1 Proteasomal ATPase OB C-terminal domain DUF815 PF05673.13 gi|336253240|ref|YP_004596347.1| - 0.00019 20.7 0.1 0.00049 19.3 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF815) AAA_13 PF13166.6 gi|336253240|ref|YP_004596347.1| - 0.00076 18.3 0.4 0.058 12.0 0.6 2.2 2 0 0 2 2 2 1 AAA domain AAA_28 PF13521.6 gi|336253240|ref|YP_004596347.1| - 0.00096 19.4 1.2 0.0037 17.5 0.0 2.5 2 1 0 2 2 2 1 AAA domain AAA_14 PF13173.6 gi|336253240|ref|YP_004596347.1| - 0.0013 18.7 0.0 0.0036 17.3 0.0 1.7 1 0 0 1 1 1 1 AAA domain TIP49 PF06068.13 gi|336253240|ref|YP_004596347.1| - 0.0015 17.9 0.0 0.003 16.8 0.0 1.5 1 0 0 1 1 1 1 TIP49 P-loop domain Prot_ATP_OB_N PF17758.1 gi|336253240|ref|YP_004596347.1| - 0.0015 18.2 0.9 0.0036 16.9 0.9 1.6 1 0 0 1 1 1 1 Proteasomal ATPase OB N-terminal domain Mg_chelatase PF01078.21 gi|336253240|ref|YP_004596347.1| - 0.0017 17.8 0.0 0.0039 16.6 0.0 1.6 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_24 PF13479.6 gi|336253240|ref|YP_004596347.1| - 0.0039 16.9 0.2 0.013 15.2 0.2 2.0 1 1 0 1 1 1 1 AAA domain IstB_IS21 PF01695.17 gi|336253240|ref|YP_004596347.1| - 0.004 16.9 0.1 0.014 15.1 0.0 1.9 2 0 0 2 2 1 1 IstB-like ATP binding protein Sigma54_activat PF00158.26 gi|336253240|ref|YP_004596347.1| - 0.0043 16.8 0.1 0.071 12.8 0.0 2.4 2 1 0 2 2 2 1 Sigma-54 interaction domain AAA_33 PF13671.6 gi|336253240|ref|YP_004596347.1| - 0.0044 17.2 0.0 0.011 15.9 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|336253240|ref|YP_004596347.1| - 0.005 17.3 0.3 0.005 17.3 0.3 2.6 2 1 0 2 2 2 1 AAA domain NB-ARC PF00931.22 gi|336253240|ref|YP_004596347.1| - 0.008 15.4 0.0 0.044 13.0 0.0 2.1 2 1 0 2 2 1 1 NB-ARC domain RNA_helicase PF00910.22 gi|336253240|ref|YP_004596347.1| - 0.0094 16.3 0.0 0.019 15.3 0.0 1.5 1 0 0 1 1 1 1 RNA helicase NACHT PF05729.12 gi|336253240|ref|YP_004596347.1| - 0.011 15.7 1.0 0.099 12.6 0.1 2.6 3 0 0 3 3 2 0 NACHT domain AAA_7 PF12775.7 gi|336253240|ref|YP_004596347.1| - 0.013 15.0 0.0 0.036 13.6 0.0 1.6 2 0 0 2 2 1 0 P-loop containing dynein motor region DUF3287 PF11690.8 gi|336253240|ref|YP_004596347.1| - 0.015 15.1 0.6 0.059 13.1 0.8 1.9 2 0 0 2 2 1 0 Protein of unknown function (DUF3287) AAA_11 PF13086.6 gi|336253240|ref|YP_004596347.1| - 0.017 15.0 0.6 0.22 11.2 0.0 2.4 2 1 0 2 2 2 0 AAA domain APG6_N PF17675.1 gi|336253240|ref|YP_004596347.1| - 0.018 15.6 2.5 0.06 13.9 2.5 1.8 1 0 0 1 1 1 0 Apg6 coiled-coil region Parvo_NS1 PF01057.17 gi|336253240|ref|YP_004596347.1| - 0.027 13.6 0.2 0.064 12.3 0.0 1.6 2 0 0 2 2 2 0 Parvovirus non-structural protein NS1 AAA_3 PF07726.11 gi|336253240|ref|YP_004596347.1| - 0.039 13.8 0.0 0.076 12.9 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ATPase_2 PF01637.18 gi|336253240|ref|YP_004596347.1| - 0.04 13.8 1.1 0.19 11.6 0.1 2.4 2 1 0 2 2 1 0 ATPase domain predominantly from Archaea TsaE PF02367.17 gi|336253240|ref|YP_004596347.1| - 0.042 13.9 0.0 0.078 13.0 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE ABC_tran PF00005.27 gi|336253240|ref|YP_004596347.1| - 0.044 14.3 0.2 0.37 11.3 0.0 2.4 2 0 0 2 2 2 0 ABC transporter GAS PF13851.6 gi|336253240|ref|YP_004596347.1| - 0.047 13.0 3.2 0.088 12.2 3.2 1.4 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding TniB PF05621.11 gi|336253240|ref|YP_004596347.1| - 0.055 12.9 0.0 1.7 8.0 0.0 2.4 1 1 1 2 2 2 0 Bacterial TniB protein ATPase PF06745.13 gi|336253240|ref|YP_004596347.1| - 0.087 12.2 6.1 0.18 11.2 0.5 3.0 2 1 0 2 2 2 0 KaiC ZapB PF06005.12 gi|336253240|ref|YP_004596347.1| - 0.15 12.5 8.1 0.041 14.3 4.0 2.2 3 0 0 3 3 1 0 Cell division protein ZapB AAA_25 PF13481.6 gi|336253240|ref|YP_004596347.1| - 0.21 11.1 0.1 0.21 11.1 0.1 3.3 2 1 1 3 3 3 0 AAA domain Med28 PF11594.8 gi|336253240|ref|YP_004596347.1| - 0.23 11.5 2.4 2.9 8.0 1.6 2.6 2 1 0 2 2 2 0 Mediator complex subunit 28 CENP-Q PF13094.6 gi|336253240|ref|YP_004596347.1| - 0.56 10.4 9.5 4.1 7.6 9.5 2.2 1 1 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit NTPase_1 PF03266.15 gi|336253240|ref|YP_004596347.1| - 0.57 10.1 0.1 0.57 10.1 0.1 2.9 4 1 1 5 5 4 0 NTPase AAA_23 PF13476.6 gi|336253240|ref|YP_004596347.1| - 0.86 10.1 3.1 41 4.6 0.0 2.7 2 1 0 2 2 2 0 AAA domain GvpL_GvpF PF06386.11 gi|336253240|ref|YP_004596347.1| - 1.4 8.8 9.0 1 9.2 0.4 2.5 1 1 1 2 2 2 0 Gas vesicle synthesis protein GvpL/GvpF Peptidase_M3 PF01432.20 gi|336253241|ref|YP_004596348.1| - 1e-67 229.4 4.1 1e-67 229.4 4.1 2.2 2 0 0 2 2 2 2 Peptidase family M3 Peptidase_M3_N PF08439.10 gi|336253241|ref|YP_004596348.1| - 7.5e-22 77.4 0.5 7.5e-22 77.4 0.5 3.3 3 0 0 3 3 3 1 Oligopeptidase F DASH_Dad2 PF08654.10 gi|336253241|ref|YP_004596348.1| - 0.038 14.4 3.0 0.81 10.1 0.7 3.1 2 1 0 2 2 2 0 DASH complex subunit Dad2 RmuC PF02646.16 gi|336253241|ref|YP_004596348.1| - 4.1 6.5 8.1 1.2 8.2 0.1 3.1 3 0 0 3 3 3 0 RmuC family Peptidase_M28 PF04389.17 gi|336253242|ref|YP_004596349.1| - 3.1e-33 115.1 0.0 4.6e-33 114.6 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M28 PA PF02225.22 gi|336253242|ref|YP_004596349.1| - 3.3e-10 39.8 0.5 6.3e-10 39.0 0.5 1.5 1 0 0 1 1 1 1 PA domain Peptidase_M20 PF01546.28 gi|336253242|ref|YP_004596349.1| - 4.5e-05 23.2 0.5 0.00044 20.0 0.5 2.2 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M42 PF05343.14 gi|336253242|ref|YP_004596349.1| - 0.014 14.4 0.3 0.024 13.7 0.3 1.3 1 0 0 1 1 1 0 M42 glutamyl aminopeptidase RlaP PF10127.9 gi|336253244|ref|YP_004596351.1| - 3e-27 95.8 0.0 4.1e-27 95.4 0.0 1.2 1 0 0 1 1 1 1 RNA repair pathway DNA polymerase beta family Polbeta PF18765.1 gi|336253244|ref|YP_004596351.1| - 0.00041 20.4 0.0 0.00094 19.2 0.0 1.6 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|336253244|ref|YP_004596351.1| - 0.04 14.2 0.0 0.066 13.5 0.0 1.4 1 0 0 1 1 1 0 Nucleotidyltransferase domain Sulfolobus_pRN PF05584.11 gi|336253244|ref|YP_004596351.1| - 0.049 13.7 0.8 0.2 11.7 0.1 2.1 2 0 0 2 2 2 0 Sulfolobus plasmid regulatory protein Hemerythrin PF01814.23 gi|336253244|ref|YP_004596351.1| - 0.089 13.4 0.4 0.54 10.9 0.0 2.3 2 0 0 2 2 2 0 Hemerythrin HHE cation binding domain Glutaredoxin PF00462.24 gi|336253245|ref|YP_004596352.1| - 3.5e-15 55.9 0.1 4.8e-15 55.5 0.1 1.2 1 0 0 1 1 1 1 Glutaredoxin GST_N_3 PF13417.6 gi|336253245|ref|YP_004596352.1| - 2.7e-14 53.3 0.0 2.9e-14 53.2 0.0 1.0 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_2 PF13409.6 gi|336253245|ref|YP_004596352.1| - 7.2e-10 39.0 0.0 8.1e-10 38.9 0.0 1.0 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N PF02798.20 gi|336253245|ref|YP_004596352.1| - 3.1e-05 24.2 0.0 3.3e-05 24.1 0.0 1.0 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain DUF836 PF05768.14 gi|336253245|ref|YP_004596352.1| - 0.001 19.4 0.1 0.0013 19.1 0.1 1.3 1 1 0 1 1 1 1 Glutaredoxin-like domain (DUF836) NTP_transf_3 PF12804.7 gi|336253245|ref|YP_004596352.1| - 0.014 15.8 0.0 0.015 15.6 0.0 1.0 1 0 0 1 1 1 0 MobA-like NTP transferase domain Trans_coact PF16805.5 gi|336253245|ref|YP_004596352.1| - 0.16 12.1 0.1 0.3 11.2 0.1 1.4 1 0 0 1 1 1 0 Phage late-transcription coactivator HIT PF01230.23 gi|336253246|ref|YP_004596353.1| - 1.7e-12 47.9 0.0 2.9e-12 47.2 0.0 1.3 1 0 0 1 1 1 1 HIT domain CwfJ_C_1 PF04677.15 gi|336253246|ref|YP_004596353.1| - 1.7e-05 24.7 0.0 3.1e-05 23.8 0.0 1.4 1 0 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 DcpS_C PF11969.8 gi|336253246|ref|YP_004596353.1| - 7.3e-05 23.2 0.0 0.00013 22.4 0.0 1.4 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding NOB1_Zn_bind PF08772.11 gi|336253247|ref|YP_004596354.1| - 0.0023 18.1 1.6 0.3 11.3 0.1 2.1 1 1 1 2 2 2 2 Nin one binding (NOB1) Zn-ribbon like DUF983 PF06170.12 gi|336253247|ref|YP_004596354.1| - 0.49 10.8 1.2 8 7.0 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF983) Peptidase_M24 PF00557.24 gi|336253248|ref|YP_004596355.1| - 7.4e-43 146.7 0.8 9.5e-43 146.3 0.8 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Asparaginase_2 PF01112.18 gi|336253249|ref|YP_004596356.1| - 2.4e-62 210.7 8.8 2.7e-62 210.5 8.8 1.0 1 0 0 1 1 1 1 Asparaginase AbrB PF05145.12 gi|336253250|ref|YP_004596357.1| - 0.15 11.0 8.5 0.23 10.4 8.5 1.3 1 1 0 1 1 1 0 Transition state regulatory protein AbrB PRA1 PF03208.19 gi|336253250|ref|YP_004596357.1| - 0.73 9.4 5.3 0.89 9.2 5.3 1.1 1 0 0 1 1 1 0 PRA1 family protein DUF2613 PF11021.8 gi|336253250|ref|YP_004596357.1| - 3.3 7.9 13.7 3.5 7.8 3.0 2.8 2 1 1 3 3 3 0 Protein of unknown function (DUF2613) Iso_dh PF00180.20 gi|336253251|ref|YP_004596358.1| - 5.4e-104 348.1 0.0 7.3e-104 347.6 0.0 1.1 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Acetyltransf_10 PF13673.7 gi|336253252|ref|YP_004596359.1| - 1.3e-23 83.3 0.2 1.5e-23 83.2 0.2 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|336253252|ref|YP_004596359.1| - 6.1e-12 45.8 0.2 7.4e-12 45.5 0.2 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|336253252|ref|YP_004596359.1| - 1.2e-11 44.9 0.2 1.9e-11 44.2 0.2 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|336253252|ref|YP_004596359.1| - 4.4e-07 30.0 0.3 5.5e-07 29.7 0.3 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_5 PF13444.6 gi|336253252|ref|YP_004596359.1| - 0.0038 17.9 2.0 0.0068 17.1 1.1 2.0 1 1 1 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|336253252|ref|YP_004596359.1| - 0.0076 16.4 0.2 0.013 15.6 0.2 1.5 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase FR47 PF08445.10 gi|336253252|ref|YP_004596359.1| - 0.04 13.9 0.1 0.079 12.9 0.1 1.5 1 0 0 1 1 1 0 FR47-like protein Acetyltransf_13 PF13880.6 gi|336253252|ref|YP_004596359.1| - 0.15 12.1 0.0 0.25 11.4 0.0 1.3 1 0 0 1 1 1 0 ESCO1/2 acetyl-transferase Nramp PF01566.18 gi|336253253|ref|YP_004596360.1| - 1.9e-61 208.1 29.0 1.9e-61 208.1 29.0 1.6 2 0 0 2 2 2 1 Natural resistance-associated macrophage protein Cupin_2 PF07883.11 gi|336253254|ref|YP_004596361.1| - 1.3e-17 63.3 1.1 1.6e-17 63.0 1.1 1.1 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|336253254|ref|YP_004596361.1| - 4.5e-05 23.4 0.7 6.1e-05 22.9 0.7 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_1 PF00190.22 gi|336253254|ref|YP_004596361.1| - 0.028 14.0 0.0 0.037 13.6 0.0 1.2 1 0 0 1 1 1 0 Cupin MannoseP_isomer PF01050.18 gi|336253254|ref|YP_004596361.1| - 0.1 12.5 0.0 0.13 12.1 0.0 1.1 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase CENP-C_C PF11699.8 gi|336253254|ref|YP_004596361.1| - 0.11 12.8 0.0 0.14 12.4 0.0 1.2 1 0 0 1 1 1 0 Mif2/CENP-C like PaaX PF07848.12 gi|336253255|ref|YP_004596362.1| - 0.068 13.4 0.2 0.18 12.1 0.2 1.6 1 0 0 1 1 1 0 PaaX-like protein TerY_C PF15616.6 gi|336253255|ref|YP_004596362.1| - 0.078 13.1 0.3 0.12 12.5 0.3 1.3 1 0 0 1 1 1 0 TerY-C metal binding domain HypA PF01155.19 gi|336253255|ref|YP_004596362.1| - 0.12 12.4 0.7 0.25 11.4 0.7 1.5 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn_Tnp_IS91 PF14319.6 gi|336253255|ref|YP_004596362.1| - 0.13 12.4 0.7 0.19 11.8 0.7 1.3 1 0 0 1 1 1 0 Transposase zinc-binding domain CpXC PF14353.6 gi|336253255|ref|YP_004596362.1| - 0.14 12.2 0.5 0.24 11.5 0.3 1.8 1 1 0 1 1 1 0 CpXC protein RNA_POL_M_15KD PF02150.16 gi|336253255|ref|YP_004596362.1| - 0.16 11.9 1.0 0.33 10.9 1.0 1.5 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit zf-CSL PF05207.13 gi|336253255|ref|YP_004596362.1| - 0.21 11.3 2.3 4 7.2 0.4 2.6 2 0 0 2 2 2 0 CSL zinc finger TFIIS_C PF01096.18 gi|336253255|ref|YP_004596362.1| - 0.22 11.4 2.8 0.93 9.4 0.5 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zinc_ribbon_4 PF13717.6 gi|336253255|ref|YP_004596362.1| - 0.25 11.3 1.5 23 5.0 0.3 2.5 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|336253255|ref|YP_004596362.1| - 0.47 10.6 2.5 1.2 9.3 2.5 1.7 1 1 0 1 1 1 0 Zinc ribbon domain HMG-CoA_red PF00368.18 gi|336253256|ref|YP_004596363.1| - 1.1e-131 439.2 4.3 1.3e-131 439.0 4.3 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase Amidohydro_3 PF07969.11 gi|336253258|ref|YP_004596365.1| - 6.9e-99 332.5 17.4 7.9e-99 332.2 17.4 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_1 PF01979.20 gi|336253258|ref|YP_004596365.1| - 3e-19 69.5 0.4 6.5e-14 52.0 0.1 2.8 2 1 0 2 2 2 2 Amidohydrolase family DinB_2 PF12867.7 gi|336253258|ref|YP_004596365.1| - 1.5 9.3 8.3 1.1 9.7 1.2 3.0 1 1 1 2 2 2 0 DinB superfamily HTH_10 PF04967.12 gi|336253259|ref|YP_004596366.1| - 2.9e-19 68.6 0.5 1.5e-18 66.3 0.1 2.0 2 0 0 2 2 2 1 HTH DNA binding domain BAT PF15915.5 gi|336253259|ref|YP_004596366.1| - 4.2e-11 43.0 1.0 6.2e-11 42.4 1.0 1.3 1 0 0 1 1 1 1 GAF and HTH_10 associated domain MarR_2 PF12802.7 gi|336253259|ref|YP_004596366.1| - 2.5e-06 27.3 0.2 1.1e-05 25.2 0.2 2.1 1 0 0 1 1 1 1 MarR family Sigma70_r4 PF04545.16 gi|336253259|ref|YP_004596366.1| - 2.1e-05 23.9 0.1 6e-05 22.5 0.0 1.8 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_24 PF13412.6 gi|336253259|ref|YP_004596366.1| - 9.1e-05 21.9 0.0 0.00017 21.1 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Sigma70_r4_2 PF08281.12 gi|336253259|ref|YP_004596366.1| - 0.00095 18.8 0.2 0.0019 17.8 0.2 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_AsnC-type PF13404.6 gi|336253259|ref|YP_004596366.1| - 0.001 18.9 0.9 0.0027 17.5 0.9 1.7 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_AraC PF00165.23 gi|336253259|ref|YP_004596366.1| - 0.03 14.4 0.0 0.06 13.5 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix proteins, AraC family HalOD1 PF18545.1 gi|336253260|ref|YP_004596367.1| - 1.9e-13 50.5 4.6 3.3e-13 49.7 4.6 1.4 1 0 0 1 1 1 1 Halobacterial output domain 1 DUF2267 PF10025.9 gi|336253261|ref|YP_004596368.1| - 1.9e-35 121.8 0.5 2.3e-35 121.5 0.5 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2267) LTD PF00932.19 gi|336253262|ref|YP_004596369.1| - 3.2e-06 27.5 0.0 4e-06 27.2 0.0 1.1 1 0 0 1 1 1 1 Lamin Tail Domain TAT_signal PF10518.9 gi|336253262|ref|YP_004596369.1| - 0.15 12.0 0.6 0.15 12.0 0.6 2.4 3 0 0 3 3 3 0 TAT (twin-arginine translocation) pathway signal sequence GFO_IDH_MocA PF01408.22 gi|336253263|ref|YP_004596370.1| - 1e-24 87.6 0.0 1.6e-24 87.0 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|336253263|ref|YP_004596370.1| - 6.7e-08 32.5 0.0 1.9e-07 31.1 0.0 1.7 2 0 0 2 2 2 1 Oxidoreductase family, C-terminal alpha/beta domain NadA PF02445.16 gi|336253264|ref|YP_004596371.1| - 2.8e-104 348.5 0.1 3.3e-104 348.3 0.1 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein FAD_binding_2 PF00890.24 gi|336253265|ref|YP_004596372.1| - 2.7e-74 250.7 3.4 3.3e-74 250.4 3.4 1.1 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|336253265|ref|YP_004596372.1| - 4.5e-12 45.8 1.6 4.7e-06 26.0 1.0 3.0 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|336253265|ref|YP_004596372.1| - 1.5e-09 37.4 0.2 7.7e-07 28.5 0.3 2.2 2 0 0 2 2 2 2 Glucose inhibited division protein A FAD_oxidored PF12831.7 gi|336253265|ref|YP_004596372.1| - 1.4e-08 34.5 6.2 8.8e-08 31.9 2.5 2.4 2 1 0 2 2 2 1 FAD dependent oxidoreductase DAO PF01266.24 gi|336253265|ref|YP_004596372.1| - 1.9e-08 34.3 4.4 9.5e-08 32.0 0.8 2.6 1 1 0 3 3 3 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|336253265|ref|YP_004596372.1| - 5.7e-05 23.3 0.4 0.00018 21.7 0.4 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Succ_DH_flav_C PF02910.20 gi|336253265|ref|YP_004596372.1| - 0.00015 21.7 0.0 0.00044 20.3 0.0 1.7 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term HI0933_like PF03486.14 gi|336253265|ref|YP_004596372.1| - 0.00026 19.8 0.2 0.017 13.8 0.6 2.1 2 0 0 2 2 2 1 HI0933-like protein AlaDh_PNT_C PF01262.21 gi|336253265|ref|YP_004596372.1| - 0.00065 19.1 0.2 0.0011 18.3 0.2 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_3 PF01494.19 gi|336253265|ref|YP_004596372.1| - 0.0014 17.9 0.1 0.0027 17.0 0.1 1.4 1 0 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.27 gi|336253265|ref|YP_004596372.1| - 0.013 16.0 0.0 0.036 14.6 0.0 1.7 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|336253265|ref|YP_004596372.1| - 0.045 13.0 0.1 0.094 12.0 0.1 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|336253265|ref|YP_004596372.1| - 0.085 11.9 0.7 0.15 11.1 0.7 1.4 1 0 0 1 1 1 0 Lycopene cyclase protein NAD_binding_7 PF13241.6 gi|336253265|ref|YP_004596372.1| - 0.15 12.5 0.1 0.32 11.5 0.1 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding ApbA PF02558.16 gi|336253265|ref|YP_004596372.1| - 0.17 11.5 0.0 0.35 10.5 0.0 1.6 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA QRPTase_C PF01729.19 gi|336253266|ref|YP_004596373.1| - 8.6e-56 188.3 2.1 1.1e-55 188.0 2.1 1.1 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 gi|336253266|ref|YP_004596373.1| - 3.3e-19 68.7 0.2 6.9e-19 67.7 0.2 1.6 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain PTS_2-RNA PF01885.16 gi|336253267|ref|YP_004596374.1| - 8.2e-31 107.4 0.0 1e-30 107.1 0.0 1.0 1 0 0 1 1 1 1 RNA 2'-phosphotransferase, Tpt1 / KptA family TrkA_N PF02254.18 gi|336253268|ref|YP_004596375.1| - 2.6e-27 95.4 2.5 4.9e-27 94.5 2.5 1.4 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.21 gi|336253268|ref|YP_004596375.1| - 2.9e-13 49.5 0.2 2.8e-12 46.3 0.0 2.3 2 0 0 2 2 2 1 TrkA-C domain F420_oxidored PF03807.17 gi|336253268|ref|YP_004596375.1| - 8.1e-07 29.5 0.2 1.6e-06 28.6 0.2 1.6 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Sacchrp_dh_NADP PF03435.18 gi|336253268|ref|YP_004596375.1| - 1.5e-06 28.5 0.4 2.5e-06 27.8 0.4 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain NAD_binding_7 PF13241.6 gi|336253268|ref|YP_004596375.1| - 3.6e-06 27.3 2.1 2.5e-05 24.6 0.3 2.4 2 1 0 2 2 2 1 Putative NAD(P)-binding NAD_binding_10 PF13460.6 gi|336253268|ref|YP_004596375.1| - 3.5e-05 23.8 1.4 0.00017 21.5 1.6 2.0 1 1 1 2 2 2 1 NAD(P)H-binding 3HCDH_N PF02737.18 gi|336253268|ref|YP_004596375.1| - 7.7e-05 22.7 0.2 0.00012 22.0 0.2 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|336253268|ref|YP_004596375.1| - 0.00015 21.1 1.2 0.00024 20.5 1.2 1.2 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain NmrA PF05368.13 gi|336253268|ref|YP_004596375.1| - 0.00031 20.4 0.5 0.00069 19.2 0.5 1.5 1 1 0 1 1 1 1 NmrA-like family Shikimate_DH PF01488.20 gi|336253268|ref|YP_004596375.1| - 0.0029 17.7 0.2 0.0043 17.1 0.2 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase Epimerase PF01370.21 gi|336253268|ref|YP_004596375.1| - 0.0036 16.8 0.2 0.0057 16.2 0.2 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family XdhC_C PF13478.6 gi|336253268|ref|YP_004596375.1| - 0.0089 16.5 0.1 0.019 15.5 0.1 1.6 1 0 0 1 1 1 1 XdhC Rossmann domain NAD_binding_2 PF03446.15 gi|336253268|ref|YP_004596375.1| - 0.01 16.0 0.1 0.023 14.8 0.0 1.7 2 0 0 2 2 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase GFO_IDH_MocA PF01408.22 gi|336253268|ref|YP_004596375.1| - 0.024 15.5 1.6 0.045 14.6 1.6 1.6 1 1 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold adh_short PF00106.25 gi|336253268|ref|YP_004596375.1| - 0.04 13.4 0.5 0.15 11.5 0.5 1.9 1 1 0 1 1 1 0 short chain dehydrogenase ApbA PF02558.16 gi|336253268|ref|YP_004596375.1| - 0.041 13.5 0.0 0.067 12.8 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Peripla_BP_3 PF13377.6 gi|336253268|ref|YP_004596375.1| - 0.065 13.6 0.4 0.13 12.6 0.2 1.6 2 0 0 2 2 2 0 Periplasmic binding protein-like domain NAD_Gly3P_dh_N PF01210.23 gi|336253268|ref|YP_004596375.1| - 0.08 12.9 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus TrkH PF02386.16 gi|336253269|ref|YP_004596376.1| - 3.7e-71 240.1 14.6 3e-70 237.1 14.6 2.0 1 1 0 1 1 1 1 Cation transport protein DUF2871 PF11070.8 gi|336253269|ref|YP_004596376.1| - 0.022 15.0 0.3 0.45 10.8 0.1 2.9 2 1 0 2 2 2 0 Protein of unknown function (DUF2871) Flp_Fap PF04964.14 gi|336253269|ref|YP_004596376.1| - 0.75 9.7 0.0 0.75 9.7 0.0 3.7 4 0 0 4 4 4 0 Flp/Fap pilin component Fer4_15 PF13459.6 gi|336253270|ref|YP_004596377.1| - 0.00037 21.2 3.1 0.00057 20.6 1.0 2.3 2 1 1 3 3 3 1 4Fe-4S single cluster domain adh_short PF00106.25 gi|336253271|ref|YP_004596378.1| - 1.3e-22 80.3 0.0 6.8e-22 77.9 0.0 1.9 1 1 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|336253271|ref|YP_004596378.1| - 3.7e-12 46.3 0.9 2.8e-11 43.4 0.9 2.0 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|336253271|ref|YP_004596378.1| - 2.9e-07 30.6 0.1 4.9e-07 29.8 0.1 1.3 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|336253271|ref|YP_004596378.1| - 0.0004 19.9 0.0 0.00063 19.3 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 gi|336253271|ref|YP_004596378.1| - 0.026 13.6 0.1 0.038 13.1 0.1 1.2 1 0 0 1 1 1 0 RmlD substrate binding domain NAD_binding_10 PF13460.6 gi|336253271|ref|YP_004596378.1| - 0.09 12.7 0.9 0.14 12.0 0.9 1.6 1 1 0 1 1 1 0 NAD(P)H-binding MutL PF13941.6 gi|336253271|ref|YP_004596378.1| - 0.15 10.6 0.3 0.22 10.1 0.3 1.2 1 0 0 1 1 1 0 MutL protein PAS_4 PF08448.10 gi|336253272|ref|YP_004596379.1| - 1.2e-79 263.7 38.3 7e-13 48.8 0.1 9.0 8 1 0 8 8 8 8 PAS fold PAS_9 PF13426.7 gi|336253272|ref|YP_004596379.1| - 2.9e-58 194.6 0.0 6.9e-11 42.3 0.0 8.6 8 0 0 8 8 8 7 PAS domain PAS_3 PF08447.12 gi|336253272|ref|YP_004596379.1| - 2.8e-52 174.9 1.7 4e-17 62.3 0.0 9.0 9 0 0 9 9 9 5 PAS fold PAS PF00989.25 gi|336253272|ref|YP_004596379.1| - 6.4e-44 148.6 2.9 4e-13 49.3 0.0 9.5 9 0 0 9 9 9 6 PAS fold HATPase_c PF02518.26 gi|336253272|ref|YP_004596379.1| - 6.4e-29 100.7 0.0 8.3e-28 97.1 0.0 2.4 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 gi|336253272|ref|YP_004596379.1| - 4.2e-22 77.7 6.9 5.9e-10 38.9 0.1 7.7 7 0 0 7 7 7 4 PAS domain PAS_7 PF12860.7 gi|336253272|ref|YP_004596379.1| - 4.2e-11 43.0 4.3 0.019 15.1 0.0 8.0 7 1 0 7 7 7 2 PAS fold GAF_3 PF13492.6 gi|336253272|ref|YP_004596379.1| - 1.6e-10 41.4 0.6 7.5e-10 39.2 0.2 2.4 3 0 0 3 3 2 1 GAF domain HisKA PF00512.25 gi|336253272|ref|YP_004596379.1| - 1.3e-09 38.0 0.1 1.3e-09 38.0 0.1 3.3 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain GAF_2 PF13185.6 gi|336253272|ref|YP_004596379.1| - 1.7e-09 38.1 3.9 1.7e-09 38.1 3.9 4.4 5 0 0 5 5 5 1 GAF domain GAF PF01590.26 gi|336253272|ref|YP_004596379.1| - 1.9e-09 38.3 0.0 1.8e-08 35.1 0.4 2.6 3 0 0 3 3 2 1 GAF domain PAS_10 PF13596.6 gi|336253272|ref|YP_004596379.1| - 4.1e-05 24.1 0.1 2.8 8.6 0.0 4.8 5 0 0 5 5 4 2 PAS domain sCache_3_3 PF17202.4 gi|336253272|ref|YP_004596379.1| - 0.0018 18.6 0.1 0.93 9.9 0.0 3.5 3 0 0 3 3 3 1 Single cache domain 3 HATPase_c_5 PF14501.6 gi|336253272|ref|YP_004596379.1| - 0.003 17.4 0.0 0.0062 16.4 0.0 1.5 1 0 0 1 1 1 1 GHKL domain HATPase_c_2 PF13581.6 gi|336253272|ref|YP_004596379.1| - 0.0081 16.1 0.0 0.034 14.1 0.0 2.1 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_6 PF08348.11 gi|336253272|ref|YP_004596379.1| - 0.013 15.4 0.0 1.1 9.1 0.0 3.5 3 1 0 3 3 3 0 YheO-like PAS domain dCache_3 PF14827.6 gi|336253272|ref|YP_004596379.1| - 0.093 12.4 0.0 3.4 7.2 0.0 2.7 2 0 0 2 2 2 0 Double sensory domain of two-component sensor kinase Pro_isomerase PF00160.21 gi|336253273|ref|YP_004596380.1| - 8.7e-50 169.1 0.0 1.1e-49 168.8 0.0 1.1 1 0 0 1 1 1 1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Pro_isomerase PF00160.21 gi|336253274|ref|YP_004596381.1| - 1.6e-49 168.2 0.0 1.8e-49 168.1 0.0 1.0 1 0 0 1 1 1 1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AstE_AspA PF04952.14 gi|336253275|ref|YP_004596382.1| - 7.1e-34 117.2 0.0 8.3e-34 117.0 0.0 1.0 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family Peptidase_M14 PF00246.24 gi|336253275|ref|YP_004596382.1| - 0.18 11.5 0.0 0.48 10.2 0.0 1.6 1 0 0 1 1 1 0 Zinc carboxypeptidase DUF3006 PF11213.8 gi|336253276|ref|YP_004596383.1| - 0.001 19.3 5.1 0.0015 18.7 5.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3006) S-layer PF07752.11 gi|336253276|ref|YP_004596383.1| - 0.045 12.8 0.5 0.057 12.5 0.5 1.1 1 0 0 1 1 1 0 S-layer protein AAA_23 PF13476.6 gi|336253277|ref|YP_004596384.1| - 3.7e-09 37.4 26.3 3.7e-09 37.4 26.3 5.6 1 1 2 3 3 2 1 AAA domain Spc7 PF08317.11 gi|336253277|ref|YP_004596384.1| - 9.4e-06 24.7 81.0 0.0022 17.0 23.2 4.3 2 2 2 4 4 4 4 Spc7 kinetochore protein GAS PF13851.6 gi|336253277|ref|YP_004596384.1| - 0.00049 19.5 64.8 0.026 13.9 22.3 3.8 3 1 0 3 3 3 3 Growth-arrest specific micro-tubule binding NPV_P10 PF05531.12 gi|336253277|ref|YP_004596384.1| - 0.0028 18.1 27.1 2.1 8.9 1.2 6.3 3 3 2 5 5 5 2 Nucleopolyhedrovirus P10 protein DUF3584 PF12128.8 gi|336253277|ref|YP_004596384.1| - 0.013 13.0 60.4 0.054 11.0 29.4 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3584) DUF5082 PF16888.5 gi|336253277|ref|YP_004596384.1| - 0.015 15.6 56.1 4.1 7.7 11.0 6.2 2 2 1 4 4 4 0 Domain of unknown function (DUF5082) DHR10 PF18595.1 gi|336253277|ref|YP_004596384.1| - 0.018 15.1 12.8 0.018 15.1 12.8 5.8 2 2 2 4 4 3 0 Designed helical repeat protein 10 domain Atg14 PF10186.9 gi|336253277|ref|YP_004596384.1| - 0.022 13.9 58.8 0.027 13.6 15.8 3.9 2 2 0 3 3 3 0 Vacuolar sorting 38 and autophagy-related subunit 14 DUF4407 PF14362.6 gi|336253277|ref|YP_004596384.1| - 0.055 12.8 56.4 0.38 10.1 4.7 3.9 1 1 3 4 4 4 0 Domain of unknown function (DUF4407) WXG100 PF06013.12 gi|336253277|ref|YP_004596384.1| - 0.15 12.3 21.8 2.9 8.2 0.0 7.1 5 2 1 6 6 6 0 Proteins of 100 residues with WXG MitMem_reg PF13012.6 gi|336253277|ref|YP_004596384.1| - 0.17 12.3 0.2 0.17 12.3 0.2 4.2 3 2 1 4 4 3 0 Maintenance of mitochondrial structure and function Baculo_PEP_C PF04513.12 gi|336253277|ref|YP_004596384.1| - 0.18 11.9 20.9 3.4 7.7 0.9 5.0 2 2 2 4 4 4 0 Baculovirus polyhedron envelope protein, PEP, C terminus ALIX_LYPXL_bnd PF13949.6 gi|336253277|ref|YP_004596384.1| - 0.32 10.2 50.8 0.22 10.8 18.6 2.5 2 0 0 2 2 2 0 ALIX V-shaped domain binding to HIV Laminin_II PF06009.12 gi|336253277|ref|YP_004596384.1| - 0.42 10.6 36.9 0.042 13.9 7.9 5.0 2 2 1 4 4 4 0 Laminin Domain II FlxA PF14282.6 gi|336253277|ref|YP_004596384.1| - 0.79 9.7 54.1 0.23 11.5 3.2 5.4 3 1 2 5 5 5 0 FlxA-like protein CENP-F_leu_zip PF10473.9 gi|336253277|ref|YP_004596384.1| - 0.98 9.4 92.6 4.5 7.3 16.6 5.1 2 2 2 4 4 4 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 HemX PF04375.14 gi|336253277|ref|YP_004596384.1| - 1.3 8.3 43.5 0.022 14.0 7.8 4.2 2 2 1 4 4 4 0 HemX, putative uroporphyrinogen-III C-methyltransferase DUF1664 PF07889.12 gi|336253277|ref|YP_004596384.1| - 1.3 9.0 43.6 1.8 8.6 7.8 5.1 3 2 2 5 5 5 0 Protein of unknown function (DUF1664) Spectrin PF00435.21 gi|336253277|ref|YP_004596384.1| - 2.1 8.9 61.7 2.8 8.5 4.3 6.1 2 2 4 6 6 6 0 Spectrin repeat DUF4201 PF13870.6 gi|336253277|ref|YP_004596384.1| - 2.8 7.7 57.6 4.3 7.0 17.2 3.8 2 2 0 3 3 3 0 Domain of unknown function (DUF4201) HIP1_clath_bdg PF16515.5 gi|336253277|ref|YP_004596384.1| - 2.9 8.6 74.8 1.1 10.0 19.3 6.4 3 2 3 6 6 6 0 Clathrin-binding domain of Huntingtin-interacting protein 1 MAD PF05557.13 gi|336253277|ref|YP_004596384.1| - 3 6.1 64.1 2.3 6.5 22.1 2.4 2 0 0 2 2 2 0 Mitotic checkpoint protein COG5 PF10392.9 gi|336253277|ref|YP_004596384.1| - 3 8.0 29.0 0.041 14.0 2.8 4.4 3 1 0 4 4 4 0 Golgi transport complex subunit 5 TPR_MLP1_2 PF07926.12 gi|336253277|ref|YP_004596384.1| - 3.5 7.7 80.7 3.8 7.6 20.3 5.4 4 1 1 5 5 5 0 TPR/MLP1/MLP2-like protein Prefoldin PF02996.17 gi|336253277|ref|YP_004596384.1| - 3.7 7.5 61.3 0.2 11.6 3.7 9.2 3 3 8 11 11 11 0 Prefoldin subunit YPEB PF14620.6 gi|336253277|ref|YP_004596384.1| - 5 6.4 29.9 0.72 9.1 7.2 3.3 2 1 1 3 3 3 0 YpeB sporulation Seryl_tRNA_N PF02403.22 gi|336253277|ref|YP_004596384.1| - 5.7 7.2 66.8 0.32 11.2 7.2 5.7 2 2 3 5 5 4 0 Seryl-tRNA synthetase N-terminal domain Med9 PF07544.13 gi|336253277|ref|YP_004596384.1| - 8.3 6.6 51.8 1.8 8.7 5.7 5.8 3 2 3 6 6 6 0 RNA polymerase II transcription mediator complex subunit 9 Acyl-CoA_dh_1 PF00441.24 gi|336253278|ref|YP_004596385.1| - 1e-33 116.6 1.3 1.8e-33 115.8 1.3 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|336253278|ref|YP_004596385.1| - 2.5e-25 89.3 0.1 1.8e-24 86.6 0.1 2.3 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|336253278|ref|YP_004596385.1| - 4.3e-24 84.5 0.0 8.4e-24 83.6 0.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|336253278|ref|YP_004596385.1| - 9.9e-10 38.8 0.6 1.6e-09 38.2 0.6 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain HpaB_N PF11794.8 gi|336253278|ref|YP_004596385.1| - 0.0057 16.4 0.0 0.022 14.4 0.0 1.9 1 1 0 1 1 1 1 4-hydroxyphenylacetate 3-hydroxylase N terminal FAD-oxidase_C PF02913.19 gi|336253279|ref|YP_004596386.1| - 1.1e-63 215.3 0.0 2.2e-63 214.2 0.0 1.6 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.23 gi|336253279|ref|YP_004596386.1| - 5.5e-42 142.8 0.0 1.3e-41 141.6 0.0 1.7 1 0 0 1 1 1 1 FAD binding domain Fer4_8 PF13183.6 gi|336253279|ref|YP_004596386.1| - 4.5e-09 36.6 4.4 1e-08 35.5 4.4 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|336253279|ref|YP_004596386.1| - 1.5e-08 35.1 3.8 2.9e-08 34.1 3.8 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain CCG PF02754.16 gi|336253279|ref|YP_004596386.1| - 4e-08 33.3 0.0 0.00014 22.0 0.1 2.7 2 0 0 2 2 2 2 Cysteine-rich domain Cytokin-bind PF09265.10 gi|336253279|ref|YP_004596386.1| - 4.1e-05 23.1 0.2 6.3e-05 22.5 0.2 1.2 1 0 0 1 1 1 1 Cytokinin dehydrogenase 1, FAD and cytokinin binding Fer4_10 PF13237.6 gi|336253279|ref|YP_004596386.1| - 0.0035 17.4 4.7 0.022 14.9 5.3 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|336253279|ref|YP_004596386.1| - 0.0035 17.5 1.5 0.22 11.7 0.3 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|336253279|ref|YP_004596386.1| - 0.045 13.9 1.9 0.51 10.5 0.3 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|336253279|ref|YP_004596386.1| - 2 9.1 8.1 13 6.4 8.1 2.3 1 1 1 2 2 2 0 4Fe-4S dicluster domain Glycos_transf_3 PF00591.21 gi|336253281|ref|YP_004596388.1| - 5.3e-35 121.2 0.0 8.6e-35 120.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.17 gi|336253281|ref|YP_004596388.1| - 6.4e-09 35.5 0.1 5.9e-08 32.4 0.0 2.6 2 0 0 2 2 2 1 Glycosyl transferase family, helical bundle domain YfhO PF09586.10 gi|336253282|ref|YP_004596389.1| - 1.4 7.0 4.6 1.6 6.9 4.6 1.1 1 0 0 1 1 1 0 Bacterial membrane protein YfhO Mem_trans PF03547.18 gi|336253282|ref|YP_004596389.1| - 1.4 7.2 5.8 1.6 7.0 5.8 1.1 1 0 0 1 1 1 0 Membrane transport protein FxsA PF04186.13 gi|336253283|ref|YP_004596390.1| - 5.9e-28 97.2 10.8 7.6e-28 96.8 10.8 1.1 1 0 0 1 1 1 1 FxsA cytoplasmic membrane protein DNA_ligase_IV PF11411.8 gi|336253283|ref|YP_004596390.1| - 0.28 11.3 1.1 0.45 10.7 1.1 1.2 1 0 0 1 1 1 0 DNA ligase IV Thioredox_DsbH PF03190.15 gi|336253284|ref|YP_004596391.1| - 1.3e-24 87.0 0.0 2.6e-24 86.0 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.6 gi|336253284|ref|YP_004596391.1| - 1.4e-11 44.4 0.0 3.1e-11 43.3 0.0 1.6 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin PF00085.20 gi|336253284|ref|YP_004596391.1| - 1.9e-08 34.2 0.0 3.3e-08 33.4 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|336253284|ref|YP_004596391.1| - 6e-06 26.7 0.0 1e-05 25.9 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin-like domain GlcNAc_2-epim PF07221.11 gi|336253284|ref|YP_004596391.1| - 0.0037 16.6 1.2 1.9 7.6 0.1 2.2 2 0 0 2 2 2 2 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) RTP1_C1 PF10363.9 gi|336253284|ref|YP_004596391.1| - 0.0068 16.6 0.0 0.028 14.6 0.0 2.0 2 0 0 2 2 2 1 Required for nuclear transport of RNA pol II C-terminus 1 Glyco_hydro_88 PF07470.13 gi|336253284|ref|YP_004596391.1| - 0.0079 15.3 0.1 2.6 7.0 0.0 2.6 2 1 0 2 2 2 2 Glycosyl Hydrolase Family 88 Glyco_hydro_76 PF03663.14 gi|336253284|ref|YP_004596391.1| - 0.023 14.2 0.1 5.9 6.3 0.0 2.2 2 0 0 2 2 2 0 Glycosyl hydrolase family 76 C5-epim_C PF06662.13 gi|336253284|ref|YP_004596391.1| - 0.16 11.4 0.1 1.8 8.1 0.0 2.2 2 0 0 2 2 2 0 D-glucuronyl C5-epimerase C-terminus TrmB PF01978.19 gi|336253285|ref|YP_004596392.1| - 2e-20 72.5 0.2 3.5e-20 71.6 0.2 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Regulator_TrmB PF11495.8 gi|336253285|ref|YP_004596392.1| - 0.032 13.4 0.0 0.052 12.7 0.0 1.3 1 0 0 1 1 1 0 Archaeal transcriptional regulator TrmB PadR PF03551.14 gi|336253285|ref|YP_004596392.1| - 0.12 12.3 0.0 0.26 11.3 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family PLDc_2 PF13091.6 gi|336253285|ref|YP_004596392.1| - 0.17 11.8 0.0 0.34 10.8 0.0 1.5 1 0 0 1 1 1 0 PLD-like domain GCHY-1 PF02649.14 gi|336253286|ref|YP_004596393.1| - 3.1e-76 256.3 3.0 3.5e-76 256.1 3.0 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 RecX PF02631.16 gi|336253286|ref|YP_004596393.1| - 0.042 14.3 0.6 1.2 9.6 0.0 2.7 3 0 0 3 3 3 0 RecX family PASTA PF03793.19 gi|336253286|ref|YP_004596393.1| - 0.072 13.0 0.0 0.21 11.4 0.0 1.8 1 0 0 1 1 1 0 PASTA domain LppX_LprAFG PF07161.13 gi|336253287|ref|YP_004596394.1| - 0.0052 16.7 0.0 0.019 14.8 0.0 1.9 2 1 0 2 2 2 1 LppX_LprAFG lipoprotein Adeno_PIX PF03955.14 gi|336253287|ref|YP_004596394.1| - 0.01 16.0 0.2 0.46 10.7 0.0 2.3 2 0 0 2 2 2 0 Adenovirus hexon-associated protein (IX) TetR_C_6 PF13977.6 gi|336253287|ref|YP_004596394.1| - 0.025 14.8 0.3 0.06 13.6 0.3 1.6 1 1 0 1 1 1 0 BetI-type transcriptional repressor, C-terminal Radical_SAM PF04055.21 gi|336253288|ref|YP_004596395.1| - 4.7e-24 85.7 0.4 8.6e-24 84.8 0.2 1.6 2 0 0 2 2 2 1 Radical SAM superfamily UPF0004 PF00919.20 gi|336253288|ref|YP_004596395.1| - 7.9e-19 67.5 0.1 2e-18 66.3 0.1 1.7 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 TRAM PF01938.20 gi|336253288|ref|YP_004596395.1| - 0.11 12.5 0.0 0.24 11.4 0.0 1.5 1 0 0 1 1 1 0 TRAM domain Peptidase_M48 PF01435.18 gi|336253289|ref|YP_004596396.1| - 1.1e-27 97.0 0.0 1.6e-27 96.5 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|336253289|ref|YP_004596396.1| - 0.00084 18.6 3.9 0.0026 17.0 0.0 2.6 3 0 0 3 3 3 1 BlaR1 peptidase M56 SprT-like PF10263.9 gi|336253289|ref|YP_004596396.1| - 0.0036 17.2 0.0 0.0062 16.4 0.0 1.4 1 0 0 1 1 1 1 SprT-like family DUF2268 PF10026.9 gi|336253289|ref|YP_004596396.1| - 0.043 13.4 0.0 0.068 12.7 0.0 1.2 1 0 0 1 1 1 0 Predicted Zn-dependent protease (DUF2268) DUF4129 PF13559.6 gi|336253290|ref|YP_004596397.1| - 1e-06 28.9 9.3 1e-06 28.9 9.3 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF4129) DUF4198 PF10670.9 gi|336253290|ref|YP_004596397.1| - 0.00027 21.4 1.1 0.11 12.9 0.0 2.4 2 0 0 2 2 2 2 Domain of unknown function (DUF4198) CarboxypepD_reg PF13620.6 gi|336253290|ref|YP_004596397.1| - 0.0034 17.6 6.7 0.018 15.3 0.8 3.7 5 0 0 5 5 5 2 Carboxypeptidase regulatory-like domain Big_1 PF02369.16 gi|336253290|ref|YP_004596397.1| - 0.093 12.8 12.6 0.66 10.0 0.2 4.0 4 0 0 4 4 4 0 Bacterial Ig-like domain (group 1) CarbopepD_reg_2 PF13715.6 gi|336253290|ref|YP_004596397.1| - 0.12 12.3 0.6 10 6.2 0.1 2.5 2 0 0 2 2 2 0 CarboxypepD_reg-like domain AglB_L1 PF18079.1 gi|336253290|ref|YP_004596397.1| - 2.3 8.6 6.4 1.9 8.8 1.6 2.8 2 1 1 3 3 3 0 Archaeal glycosylation protein B long peripheral domain Phage_holin_3_6 PF07332.11 gi|336253291|ref|YP_004596398.1| - 2.6 8.1 7.1 5.4 7.1 7.1 1.5 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III DUF58 PF01882.18 gi|336253292|ref|YP_004596399.1| - 3.8e-15 55.9 1.0 8.5e-15 54.8 1.0 1.6 1 0 0 1 1 1 1 Protein of unknown function DUF58 DUF11 PF01345.18 gi|336253292|ref|YP_004596399.1| - 9e-09 35.5 2.6 2.3e-08 34.2 1.9 2.1 1 1 0 1 1 1 1 Domain of unknown function DUF11 NPCBM_assoc PF10633.9 gi|336253292|ref|YP_004596399.1| - 1.4e-06 28.4 0.9 1.4e-06 28.4 0.9 2.6 3 0 0 3 3 3 1 NPCBM-associated, NEW3 domain of alpha-galactosidase Acetyltransf_6 PF13480.7 gi|336253292|ref|YP_004596399.1| - 0.023 14.8 0.4 0.023 14.8 0.4 2.7 3 1 0 3 3 3 0 Acetyltransferase (GNAT) domain ACD PF16671.5 gi|336253292|ref|YP_004596399.1| - 0.063 11.6 0.0 0.089 11.1 0.0 1.1 1 0 0 1 1 1 0 Actin cross-linking domain TRAP_beta PF05753.14 gi|336253292|ref|YP_004596399.1| - 0.14 11.5 0.1 0.23 10.9 0.1 1.2 1 0 0 1 1 1 0 Translocon-associated protein beta (TRAPB) Glyco_transf_4 PF13439.6 gi|336253292|ref|YP_004596399.1| - 2.6 8.0 5.6 4.2 7.4 0.1 3.3 4 0 0 4 4 4 0 Glycosyltransferase Family 4 AAA_3 PF07726.11 gi|336253294|ref|YP_004596401.1| - 3.4e-65 217.8 0.1 5.1e-65 217.2 0.1 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|336253294|ref|YP_004596401.1| - 1.3e-16 60.2 2.9 3e-16 59.0 2.9 1.6 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|336253294|ref|YP_004596401.1| - 1.8e-15 57.2 0.0 3.5e-15 56.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|336253294|ref|YP_004596401.1| - 6.2e-06 26.7 0.0 2e-05 25.1 0.0 1.9 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|336253294|ref|YP_004596401.1| - 6.1e-05 22.8 0.0 0.001 18.8 0.0 2.1 1 1 0 1 1 1 1 Sigma-54 interaction domain MCM PF00493.23 gi|336253294|ref|YP_004596401.1| - 0.027 13.6 0.0 0.036 13.2 0.0 1.3 1 0 0 1 1 1 0 MCM P-loop domain RuvB_N PF05496.12 gi|336253294|ref|YP_004596401.1| - 0.073 12.8 0.0 2.7 7.7 0.0 2.3 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain Mg_chelatase PF01078.21 gi|336253294|ref|YP_004596401.1| - 0.11 11.8 0.1 3.5 7.0 0.0 2.1 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI ATPase PF06745.13 gi|336253294|ref|YP_004596401.1| - 0.13 11.5 0.0 0.21 10.9 0.0 1.2 1 0 0 1 1 1 0 KaiC Radical_SAM PF04055.21 gi|336253295|ref|YP_004596402.1| - 1e-10 42.3 0.1 1.8e-10 41.5 0.1 1.4 1 0 0 1 1 1 1 Radical SAM superfamily CofC PF01983.16 gi|336253297|ref|YP_004596404.1| - 1.2e-40 139.0 0.0 1.5e-40 138.7 0.0 1.1 1 0 0 1 1 1 1 Guanylyl transferase CofC like NTP_transf_3 PF12804.7 gi|336253297|ref|YP_004596404.1| - 0.024 15.0 5.6 0.038 14.4 5.4 1.4 1 1 0 1 1 1 0 MobA-like NTP transferase domain Tubulin PF00091.25 gi|336253298|ref|YP_004596405.1| - 9.6e-28 97.7 0.0 1.8e-27 96.9 0.0 1.5 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.6 gi|336253298|ref|YP_004596405.1| - 0.036 13.3 0.1 0.055 12.6 0.1 1.4 1 0 0 1 1 1 0 Tubulin like Endotoxin_C2 PF18449.1 gi|336253298|ref|YP_004596405.1| - 0.13 12.6 1.1 0.28 11.6 0.0 2.0 2 0 0 2 2 2 0 Delta endotoxin NAD_binding_10 PF13460.6 gi|336253299|ref|YP_004596406.1| - 7.6e-28 97.6 0.0 1.6e-27 96.6 0.0 1.5 1 0 0 1 1 1 1 NAD(P)H-binding Epimerase PF01370.21 gi|336253299|ref|YP_004596406.1| - 4.4e-19 68.9 0.0 9.2e-18 64.6 0.0 2.2 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 gi|336253299|ref|YP_004596406.1| - 5.2e-12 45.5 0.0 1.9e-07 30.5 0.0 2.3 2 1 0 2 2 2 2 RmlD substrate binding domain 3Beta_HSD PF01073.19 gi|336253299|ref|YP_004596406.1| - 1.2e-10 40.9 0.0 2.5e-09 36.6 0.0 2.1 1 1 1 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family NmrA PF05368.13 gi|336253299|ref|YP_004596406.1| - 1.5e-09 37.8 0.0 2.1e-09 37.3 0.0 1.4 1 0 0 1 1 1 1 NmrA-like family GDP_Man_Dehyd PF16363.5 gi|336253299|ref|YP_004596406.1| - 1.3e-08 34.6 0.0 2.4e-08 33.8 0.0 1.4 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase NAD_binding_4 PF07993.12 gi|336253299|ref|YP_004596406.1| - 0.0012 18.1 0.0 0.57 9.3 0.0 2.3 2 0 0 2 2 2 2 Male sterility protein Polysacc_synt_2 PF02719.15 gi|336253299|ref|YP_004596406.1| - 0.0019 17.4 0.1 0.031 13.4 0.1 2.3 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein adh_short PF00106.25 gi|336253299|ref|YP_004596406.1| - 0.0082 15.6 0.0 0.012 15.1 0.0 1.3 1 0 0 1 1 1 1 short chain dehydrogenase Glyco_trans_4_4 PF13579.6 gi|336253299|ref|YP_004596406.1| - 0.01 16.3 0.7 0.051 14.0 0.1 2.3 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.6 gi|336253299|ref|YP_004596406.1| - 0.011 15.8 0.0 0.021 14.8 0.0 1.5 1 0 0 1 1 1 0 Glycosyltransferase Family 4 NAD_binding_2 PF03446.15 gi|336253299|ref|YP_004596406.1| - 0.013 15.7 0.0 0.026 14.7 0.0 1.4 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|336253299|ref|YP_004596406.1| - 0.021 15.4 0.0 0.081 13.5 0.0 1.9 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent KR PF08659.10 gi|336253299|ref|YP_004596406.1| - 0.022 14.7 0.0 0.045 13.7 0.0 1.5 1 0 0 1 1 1 0 KR domain UDPG_MGDP_dh_N PF03721.14 gi|336253299|ref|YP_004596406.1| - 0.047 13.3 0.0 0.091 12.3 0.0 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Pyr_redox PF00070.27 gi|336253299|ref|YP_004596406.1| - 0.077 13.6 0.0 0.36 11.4 0.0 2.1 3 0 0 3 3 2 0 Pyridine nucleotide-disulphide oxidoreductase Thymidylate_kin PF02223.17 gi|336253300|ref|YP_004596407.1| - 3.4e-36 124.6 0.0 6.4e-36 123.8 0.0 1.4 1 1 0 1 1 1 1 Thymidylate kinase dNK PF01712.19 gi|336253300|ref|YP_004596407.1| - 2.4e-06 27.6 0.0 9.8e-06 25.6 0.0 1.8 1 1 0 1 1 1 1 Deoxynucleoside kinase AAA_33 PF13671.6 gi|336253300|ref|YP_004596407.1| - 3e-06 27.5 0.0 1.4e-05 25.3 0.0 2.0 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|336253300|ref|YP_004596407.1| - 7.2e-06 26.6 0.0 4e-05 24.2 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|336253300|ref|YP_004596407.1| - 0.0029 17.9 0.2 0.0037 17.5 0.2 1.4 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|336253300|ref|YP_004596407.1| - 0.012 16.1 0.0 1.7 9.1 0.0 2.5 2 1 0 2 2 2 0 AAA domain DUF3179 PF11376.8 gi|336253300|ref|YP_004596407.1| - 0.032 13.6 0.1 0.037 13.4 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3179) AAA_16 PF13191.6 gi|336253300|ref|YP_004596407.1| - 0.038 14.4 0.0 0.064 13.6 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain AAA_5 PF07728.14 gi|336253300|ref|YP_004596407.1| - 0.054 13.5 0.0 0.087 12.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|336253300|ref|YP_004596407.1| - 0.14 12.4 0.0 0.48 10.7 0.0 1.9 2 0 0 2 2 2 0 AAA domain AsnC_trans_reg PF01037.21 gi|336253301|ref|YP_004596408.1| - 6.1e-12 45.3 0.1 6.8e-12 45.2 0.1 1.0 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain NapD PF03927.13 gi|336253301|ref|YP_004596408.1| - 0.064 13.3 1.3 0.11 12.6 1.3 1.3 1 1 0 1 1 1 0 NapD protein TrkA_N PF02254.18 gi|336253302|ref|YP_004596409.1| - 8.4e-27 93.7 0.3 1.3e-26 93.1 0.3 1.3 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.21 gi|336253302|ref|YP_004596409.1| - 1.5e-13 50.4 0.4 3.4e-13 49.2 0.4 1.6 1 0 0 1 1 1 1 TrkA-C domain UDPG_MGDP_dh_N PF03721.14 gi|336253302|ref|YP_004596409.1| - 7.5e-07 28.9 0.0 1.3e-06 28.1 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_10 PF13460.6 gi|336253302|ref|YP_004596409.1| - 3.5e-06 27.0 0.1 6.7e-06 26.1 0.1 1.5 1 0 0 1 1 1 1 NAD(P)H-binding NAD_binding_7 PF13241.6 gi|336253302|ref|YP_004596409.1| - 3.8e-06 27.3 0.1 6.7e-06 26.5 0.1 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding ApbA PF02558.16 gi|336253302|ref|YP_004596409.1| - 6.6e-06 25.8 0.0 1.1e-05 25.1 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA FAD_binding_3 PF01494.19 gi|336253302|ref|YP_004596409.1| - 7.4e-06 25.4 0.0 8.8e-06 25.2 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.27 gi|336253302|ref|YP_004596409.1| - 2.4e-05 24.8 0.1 4.7e-05 23.9 0.1 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|336253302|ref|YP_004596409.1| - 4.6e-05 23.2 0.0 7e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|336253302|ref|YP_004596409.1| - 0.00022 20.5 0.0 0.00033 20.0 0.0 1.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|336253302|ref|YP_004596409.1| - 0.00022 21.4 0.0 0.00043 20.5 0.0 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain 3HCDH_N PF02737.18 gi|336253302|ref|YP_004596409.1| - 0.00046 20.1 0.0 0.00067 19.6 0.0 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Epimerase PF01370.21 gi|336253302|ref|YP_004596409.1| - 0.0005 19.6 0.1 0.001 18.6 0.1 1.5 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family FAD_binding_2 PF00890.24 gi|336253302|ref|YP_004596409.1| - 0.0016 17.6 0.0 0.025 13.7 0.0 2.0 2 0 0 2 2 2 1 FAD binding domain NAD_binding_2 PF03446.15 gi|336253302|ref|YP_004596409.1| - 0.0019 18.4 0.0 0.022 14.9 0.0 2.1 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|336253302|ref|YP_004596409.1| - 0.0025 18.1 0.1 0.0043 17.3 0.1 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain 2-Hacid_dh_C PF02826.19 gi|336253302|ref|YP_004596409.1| - 0.0039 16.6 0.0 0.021 14.2 0.0 1.9 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|336253302|ref|YP_004596409.1| - 0.0044 16.6 0.0 0.0084 15.7 0.0 1.5 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain F420_oxidored PF03807.17 gi|336253302|ref|YP_004596409.1| - 0.0058 17.2 0.0 0.046 14.3 0.0 2.1 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent XdhC_C PF13478.6 gi|336253302|ref|YP_004596409.1| - 0.017 15.6 0.0 0.033 14.7 0.0 1.5 1 0 0 1 1 1 0 XdhC Rossmann domain AlaDh_PNT_C PF01262.21 gi|336253302|ref|YP_004596409.1| - 0.022 14.0 0.1 0.032 13.5 0.1 1.2 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain HI0933_like PF03486.14 gi|336253302|ref|YP_004596409.1| - 0.024 13.4 0.0 0.033 12.9 0.0 1.2 1 0 0 1 1 1 0 HI0933-like protein Shikimate_DH PF01488.20 gi|336253302|ref|YP_004596409.1| - 0.072 13.2 0.0 0.12 12.4 0.0 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Glyco_transf_4 PF13439.6 gi|336253302|ref|YP_004596409.1| - 0.086 12.8 0.4 0.15 12.0 0.2 1.5 2 0 0 2 2 1 0 Glycosyltransferase Family 4 NAD_Gly3P_dh_N PF01210.23 gi|336253302|ref|YP_004596409.1| - 0.089 12.8 0.0 0.17 11.9 0.0 1.5 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Glyco_trans_4_4 PF13579.6 gi|336253302|ref|YP_004596409.1| - 0.1 13.1 0.4 0.23 11.9 0.4 1.6 1 0 0 1 1 1 0 Glycosyl transferase 4-like domain Pyr_redox_3 PF13738.6 gi|336253302|ref|YP_004596409.1| - 0.11 11.8 0.0 0.16 11.2 0.0 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Castor_Poll_mid PF06241.12 gi|336253302|ref|YP_004596409.1| - 0.17 11.9 0.0 0.33 10.9 0.0 1.4 1 0 0 1 1 1 0 Castor and Pollux, part of voltage-gated ion channel AsnC_trans_reg PF01037.21 gi|336253303|ref|YP_004596410.1| - 1.5e-09 37.7 0.1 1.7e-09 37.5 0.1 1.0 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain Cys_Met_Meta_PP PF01053.20 gi|336253307|ref|YP_004596414.1| - 1.3e-137 458.4 0.0 1.5e-137 458.2 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.21 gi|336253307|ref|YP_004596414.1| - 5.8e-08 32.3 0.0 8.1e-08 31.8 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|336253307|ref|YP_004596414.1| - 1.6e-05 24.4 0.7 4.4e-05 22.9 0.4 1.7 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family SepSecS PF05889.13 gi|336253307|ref|YP_004596414.1| - 0.01 14.5 0.0 0.016 13.9 0.0 1.2 1 0 0 1 1 1 0 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS Aminotran_5 PF00266.19 gi|336253307|ref|YP_004596414.1| - 0.014 14.4 0.0 0.027 13.4 0.0 1.5 1 0 0 1 1 1 0 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|336253307|ref|YP_004596414.1| - 0.037 13.3 0.0 0.064 12.5 0.0 1.4 1 0 0 1 1 1 0 Beta-eliminating lyase DUF4115 PF13464.6 gi|336253308|ref|YP_004596415.1| - 0.21 11.8 1.4 0.76 10.0 0.1 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF4115) DUF839 PF05787.13 gi|336253309|ref|YP_004596416.1| - 4.8e-22 78.8 2.9 9.6e-20 71.2 1.4 3.6 2 1 1 3 3 3 1 Bacterial protein of unknown function (DUF839) Dockerin_1 PF00404.18 gi|336253309|ref|YP_004596416.1| - 0.00012 22.2 1.5 0.00012 22.2 1.5 2.1 2 0 0 2 2 2 1 Dockerin type I domain EF-hand_7 PF13499.6 gi|336253309|ref|YP_004596416.1| - 0.14 12.7 6.8 0.37 11.3 2.7 3.3 2 1 0 2 2 2 0 EF-hand domain pair EF-hand_1 PF00036.32 gi|336253309|ref|YP_004596416.1| - 0.15 11.7 9.3 1.3 8.8 0.1 4.2 3 1 1 4 4 4 0 EF hand EF-hand_6 PF13405.6 gi|336253309|ref|YP_004596416.1| - 0.31 11.1 5.0 2.4 8.3 0.1 3.7 3 0 0 3 3 3 0 EF-hand domain iPGM_N PF06415.13 gi|336253311|ref|YP_004596418.1| - 4.1e-79 265.0 0.7 5.7e-79 264.5 0.7 1.2 1 0 0 1 1 1 1 BPG-independent PGAM N-terminus (iPGM_N) Metalloenzyme PF01676.18 gi|336253311|ref|YP_004596418.1| - 1.3e-72 244.1 0.2 1.5e-72 243.9 0.2 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.22 gi|336253311|ref|YP_004596418.1| - 9.7e-09 35.3 0.2 1e-07 31.9 0.2 2.3 2 0 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.23 gi|336253311|ref|YP_004596418.1| - 3.5e-05 23.4 0.4 0.00016 21.2 0.1 2.3 2 1 0 2 2 2 1 Sulfatase PglZ PF08665.12 gi|336253311|ref|YP_004596418.1| - 0.00059 20.0 0.1 0.0016 18.6 0.1 1.7 1 0 0 1 1 1 1 PglZ domain PGM_PMM_II PF02879.16 gi|336253311|ref|YP_004596418.1| - 0.22 12.2 1.4 10 6.8 0.2 3.0 2 1 1 3 3 3 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II VKG_Carbox PF05090.14 gi|336253312|ref|YP_004596419.1| - 1.6e-15 56.9 0.0 2.4e-15 56.3 0.0 1.4 1 1 0 1 1 1 1 Vitamin K-dependent gamma-carboxylase DEC1 PF15859.5 gi|336253312|ref|YP_004596419.1| - 0.01 15.8 0.1 0.029 14.4 0.1 1.7 1 0 0 1 1 1 0 Deleted in esophageal cancer 1 family DUF2613 PF11021.8 gi|336253312|ref|YP_004596419.1| - 0.11 12.6 0.1 0.54 10.4 0.1 2.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2613) DUF393 PF04134.12 gi|336253313|ref|YP_004596420.1| - 9.4e-34 117.1 0.0 1.1e-33 116.9 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function, DUF393 NurA PF09376.10 gi|336253314|ref|YP_004596421.1| - 1.8e-17 63.9 0.0 2.3e-17 63.5 0.0 1.1 1 0 0 1 1 1 1 NurA domain 5_nucleotid_C PF02872.18 gi|336253315|ref|YP_004596422.1| - 4.3e-26 92.0 0.0 8.3e-26 91.1 0.0 1.4 1 0 0 1 1 1 1 5'-nucleotidase, C-terminal domain UCR_Fe-S_N PF10399.9 gi|336253315|ref|YP_004596422.1| - 0.18 11.2 2.5 0.42 10.0 2.5 1.6 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Cohesin PF00963.18 gi|336253316|ref|YP_004596423.1| - 1.2e-05 25.5 0.0 3.4e-05 24.1 0.0 1.6 1 0 0 1 1 1 1 Cohesin domain Cohesin PF00963.18 gi|336253319|ref|YP_004596426.1| - 1.4e-05 25.4 0.3 5.4e-05 23.5 0.3 1.9 1 1 0 1 1 1 1 Cohesin domain DUF87 PF01935.17 gi|336253320|ref|YP_004596427.1| - 1.9e-08 34.7 0.0 3.5e-08 33.8 0.0 1.4 1 0 0 1 1 1 1 Helicase HerA, central domain DUF853 PF05872.12 gi|336253320|ref|YP_004596427.1| - 3e-07 29.4 0.3 0.00066 18.4 0.1 2.6 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) HAS-barrel PF09378.10 gi|336253320|ref|YP_004596427.1| - 8.8e-05 22.6 0.0 0.00035 20.7 0.0 2.0 1 0 0 1 1 1 1 HAS barrel domain AAA_10 PF12846.7 gi|336253320|ref|YP_004596427.1| - 0.0011 18.0 0.0 0.088 11.7 0.0 2.1 2 0 0 2 2 2 1 AAA-like domain TrwB_AAD_bind PF10412.9 gi|336253320|ref|YP_004596427.1| - 0.0082 15.1 0.0 0.014 14.3 0.0 1.3 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain T2SSE PF00437.20 gi|336253320|ref|YP_004596427.1| - 0.023 13.8 0.0 0.042 12.9 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_22 PF13401.6 gi|336253320|ref|YP_004596427.1| - 0.029 14.6 0.0 0.18 12.1 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|336253320|ref|YP_004596427.1| - 0.041 14.3 0.2 1.2 9.5 0.1 2.3 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) FtsK_SpoIIIE PF01580.18 gi|336253320|ref|YP_004596427.1| - 0.064 12.6 0.0 0.16 11.3 0.0 1.6 2 0 0 2 2 2 0 FtsK/SpoIIIE family ResIII PF04851.15 gi|336253320|ref|YP_004596427.1| - 0.067 13.2 0.0 9.7 6.2 0.0 2.2 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit AAA_16 PF13191.6 gi|336253320|ref|YP_004596427.1| - 0.099 13.0 0.0 0.39 11.1 0.0 2.2 1 1 0 1 1 1 0 AAA ATPase domain FRG PF08867.11 gi|336253322|ref|YP_004596429.1| - 3.6e-22 79.1 0.0 5.8e-22 78.5 0.0 1.3 1 0 0 1 1 1 1 FRG domain adh_short_C2 PF13561.6 gi|336253323|ref|YP_004596430.1| - 1.3e-71 240.9 1.6 1.4e-71 240.7 1.6 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|336253323|ref|YP_004596430.1| - 1.7e-55 187.5 2.3 2e-55 187.3 2.3 1.0 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|336253323|ref|YP_004596430.1| - 4.9e-11 42.9 0.5 6.9e-11 42.4 0.5 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|336253323|ref|YP_004596430.1| - 1.9e-08 34.1 0.4 2.4e-08 33.8 0.4 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Cadherin_4 PF17803.1 gi|336253323|ref|YP_004596430.1| - 0.16 12.6 1.9 0.42 11.3 1.9 1.8 1 1 0 1 1 1 0 Bacterial cadherin-like domain 3HCDH_N PF02737.18 gi|336253323|ref|YP_004596430.1| - 0.61 9.9 4.0 1.2 9.0 4.1 1.5 1 1 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain SpoIIAA-like PF11964.8 gi|336253324|ref|YP_004596431.1| - 2.4e-08 34.9 0.0 2.9e-08 34.6 0.0 1.1 1 0 0 1 1 1 1 SpoIIAA-like DLH PF01738.18 gi|336253325|ref|YP_004596432.1| - 5.1e-08 32.7 0.0 6.1e-08 32.5 0.0 1.1 1 0 0 1 1 1 1 Dienelactone hydrolase family Peptidase_S15 PF02129.18 gi|336253325|ref|YP_004596432.1| - 5.1e-05 23.0 0.1 5.7e-05 22.8 0.1 1.2 1 0 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) BAAT_C PF08840.11 gi|336253325|ref|YP_004596432.1| - 0.0011 19.0 0.0 0.0025 17.8 0.0 1.6 1 1 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal Thioesterase PF00975.20 gi|336253325|ref|YP_004596432.1| - 0.01 15.9 0.2 0.78 9.8 0.3 2.1 1 1 1 2 2 2 0 Thioesterase domain Abhydrolase_6 PF12697.7 gi|336253325|ref|YP_004596432.1| - 0.014 16.0 7.0 0.045 14.3 6.8 1.9 1 1 0 1 1 1 0 Alpha/beta hydrolase family FSH1 PF03959.13 gi|336253325|ref|YP_004596432.1| - 0.018 14.7 0.0 0.051 13.2 0.0 1.7 1 1 0 1 1 1 0 Serine hydrolase (FSH1) Abhydrolase_1 PF00561.20 gi|336253326|ref|YP_004596433.1| - 8.7e-23 81.3 0.0 6.6e-19 68.5 0.0 2.1 2 0 0 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|336253326|ref|YP_004596433.1| - 9.1e-22 78.7 10.7 1.1e-21 78.4 10.7 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|336253326|ref|YP_004596433.1| - 4.5e-19 68.7 0.0 7.6e-19 67.9 0.0 1.3 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_4 PF08386.10 gi|336253326|ref|YP_004596433.1| - 5.4e-06 26.5 0.0 2.9e-05 24.1 0.0 2.0 2 0 0 2 2 2 1 TAP-like protein Peptidase_S9 PF00326.21 gi|336253326|ref|YP_004596433.1| - 0.0024 17.4 0.2 0.014 14.9 0.0 2.2 2 2 0 2 2 2 1 Prolyl oligopeptidase family Peptidase_S15 PF02129.18 gi|336253326|ref|YP_004596433.1| - 0.0041 16.8 0.3 0.011 15.3 0.3 1.6 1 1 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) NTS_2 PF15448.6 gi|336253326|ref|YP_004596433.1| - 0.023 15.1 0.7 0.099 13.1 0.4 2.2 2 0 0 2 2 2 0 N-terminal segments of P. falciparum erythrocyte membrane protein Thioesterase PF00975.20 gi|336253326|ref|YP_004596433.1| - 0.039 14.1 0.6 0.32 11.1 0.6 2.0 1 1 0 1 1 1 0 Thioesterase domain Abhydrolase_5 PF12695.7 gi|336253326|ref|YP_004596433.1| - 0.17 11.6 0.0 1.3 8.8 0.0 2.1 1 1 0 1 1 1 0 Alpha/beta hydrolase family PspA_IM30 PF04012.12 gi|336253327|ref|YP_004596434.1| - 7e-35 120.6 32.2 7e-35 120.6 32.2 2.1 2 0 0 2 2 2 1 PspA/IM30 family Spc7 PF08317.11 gi|336253327|ref|YP_004596434.1| - 0.004 16.1 26.1 0.004 16.1 26.1 2.9 1 1 2 3 3 3 1 Spc7 kinetochore protein YabA PF06156.13 gi|336253327|ref|YP_004596434.1| - 0.012 16.2 27.2 0.22 12.2 7.1 3.6 1 1 2 3 3 3 0 Initiation control protein YabA DHR10 PF18595.1 gi|336253327|ref|YP_004596434.1| - 0.016 15.3 17.5 0.016 15.3 17.5 3.6 2 2 1 3 3 3 0 Designed helical repeat protein 10 domain DUF1664 PF07889.12 gi|336253327|ref|YP_004596434.1| - 0.016 15.2 7.4 0.016 15.2 7.4 3.0 2 1 1 3 3 3 0 Protein of unknown function (DUF1664) DUF3535 PF12054.8 gi|336253327|ref|YP_004596434.1| - 0.037 13.3 10.7 0.077 12.2 10.7 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3535) Prominin PF05478.11 gi|336253327|ref|YP_004596434.1| - 0.12 10.3 13.5 0.16 9.9 13.5 1.1 1 0 0 1 1 1 0 Prominin BLOC1_2 PF10046.9 gi|336253327|ref|YP_004596434.1| - 0.25 11.7 24.2 0.79 10.1 0.4 3.8 2 1 2 4 4 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Baculo_PEP_C PF04513.12 gi|336253327|ref|YP_004596434.1| - 0.53 10.3 11.3 3.4 7.7 7.3 3.1 1 1 2 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF3584 PF12128.8 gi|336253327|ref|YP_004596434.1| - 0.63 7.5 48.0 0.17 9.4 32.9 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3584) FOXP-CC PF16159.5 gi|336253327|ref|YP_004596434.1| - 0.98 10.1 10.5 0.99 10.1 0.2 2.8 2 0 0 2 2 2 0 FOXP coiled-coil domain Dor1 PF04124.12 gi|336253327|ref|YP_004596434.1| - 1.9 7.1 19.6 8.9 4.9 16.7 2.3 1 1 1 2 2 2 0 Dor1-like family AAA_13 PF13166.6 gi|336253327|ref|YP_004596434.1| - 2.6 6.6 33.5 0.28 9.8 26.5 2.0 1 1 1 2 2 2 0 AAA domain SHE3 PF17078.5 gi|336253327|ref|YP_004596434.1| - 3.1 7.5 29.6 20 4.8 28.9 2.6 1 1 1 2 2 2 0 SWI5-dependent HO expression protein 3 COG6 PF06419.11 gi|336253327|ref|YP_004596434.1| - 3.4 5.8 22.0 0.035 12.3 1.2 2.8 1 1 1 3 3 3 0 Conserved oligomeric complex COG6 FTA4 PF13093.6 gi|336253327|ref|YP_004596434.1| - 3.6 7.4 26.0 42 3.9 0.5 3.2 1 1 1 2 2 2 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 Endotoxin_N PF03945.14 gi|336253327|ref|YP_004596434.1| - 3.8 7.2 5.1 2.4 7.8 2.9 1.7 1 1 1 2 2 2 0 delta endotoxin, N-terminal domain Sec5 PF15469.6 gi|336253327|ref|YP_004596434.1| - 4.2 7.1 16.2 17 5.2 16.2 2.0 1 1 0 1 1 1 0 Exocyst complex component Sec5 DUF948 PF06103.11 gi|336253327|ref|YP_004596434.1| - 5.5 7.3 14.1 2 8.8 2.6 3.8 1 1 1 3 3 3 0 Bacterial protein of unknown function (DUF948) CENP-F_leu_zip PF10473.9 gi|336253327|ref|YP_004596434.1| - 6.9 6.7 42.3 4.7 7.2 18.0 3.7 1 1 3 4 4 4 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF5082 PF16888.5 gi|336253327|ref|YP_004596434.1| - 7.4 6.9 27.6 2.3 8.5 12.3 3.7 1 1 2 3 3 3 0 Domain of unknown function (DUF5082) DUF3426 PF11906.8 gi|336253328|ref|YP_004596435.1| - 0.0073 16.5 0.0 0.017 15.3 0.0 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF3426) UCR_Fe-S_N PF10399.9 gi|336253328|ref|YP_004596435.1| - 0.043 13.2 2.6 0.076 12.4 2.6 1.4 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal OppC_N PF12911.7 gi|336253329|ref|YP_004596436.1| - 0.43 10.6 3.2 1.7 8.7 1.1 2.6 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C YtxH PF12732.7 gi|336253332|ref|YP_004596439.1| - 0.0021 18.6 0.1 0.02 15.4 0.0 2.4 1 1 1 2 2 2 1 YtxH-like protein DUF2207 PF09972.9 gi|336253332|ref|YP_004596439.1| - 0.0069 15.2 0.8 1.3 7.7 0.0 2.1 2 0 0 2 2 2 2 Predicted membrane protein (DUF2207) Aldedh PF00171.22 gi|336253332|ref|YP_004596439.1| - 0.077 11.5 0.1 0.5 8.8 0.0 2.0 2 0 0 2 2 2 0 Aldehyde dehydrogenase family DUF327 PF03885.13 gi|336253332|ref|YP_004596439.1| - 0.12 12.4 0.0 0.2 11.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF327) MRAP PF15183.6 gi|336253332|ref|YP_004596439.1| - 2.5 8.1 6.5 3.4 7.7 0.3 2.5 2 0 0 2 2 2 0 Melanocortin-2 receptor accessory protein family RskA PF10099.9 gi|336253333|ref|YP_004596440.1| - 9.8 6.4 7.5 2.3 8.5 0.8 2.4 2 1 0 2 2 2 0 Anti-sigma-K factor rskA Hemerythrin PF01814.23 gi|336253334|ref|YP_004596441.1| - 4.4e-21 75.9 16.2 4.4e-21 75.9 16.2 2.0 1 1 1 2 2 2 1 Hemerythrin HHE cation binding domain ScdA_N PF04405.14 gi|336253334|ref|YP_004596441.1| - 1.7e-18 66.0 0.1 3.5e-18 65.0 0.1 1.6 1 0 0 1 1 1 1 Domain of Unknown function (DUF542) Cep57_MT_bd PF06657.13 gi|336253334|ref|YP_004596441.1| - 0.11 13.0 2.1 0.19 12.2 0.3 2.2 2 0 0 2 2 2 0 Centrosome microtubule-binding domain of Cep57 FapA PF03961.13 gi|336253334|ref|YP_004596441.1| - 0.26 9.9 0.1 0.36 9.4 0.1 1.2 1 0 0 1 1 1 0 Flagellar Assembly Protein A CCDC-167 PF15188.6 gi|336253334|ref|YP_004596441.1| - 0.8 10.1 4.7 0.71 10.2 1.9 2.3 2 2 0 2 2 2 0 Coiled-coil domain-containing protein 167 APG6_N PF17675.1 gi|336253334|ref|YP_004596441.1| - 0.82 10.2 5.5 3.4 8.2 2.8 2.4 1 1 1 2 2 2 0 Apg6 coiled-coil region Cupin_2 PF07883.11 gi|336253335|ref|YP_004596442.1| - 1e-11 44.4 0.1 1.3e-11 44.1 0.1 1.1 1 0 0 1 1 1 1 Cupin domain Cupin_3 PF05899.12 gi|336253335|ref|YP_004596442.1| - 0.00097 18.8 0.1 0.0028 17.3 0.1 1.8 1 1 0 1 1 1 1 Protein of unknown function (DUF861) Ppnp PF06865.11 gi|336253335|ref|YP_004596442.1| - 0.01 16.2 0.0 0.015 15.7 0.0 1.2 1 0 0 1 1 1 0 Pyrimidine/purine nucleoside phosphorylase Pirin_C PF05726.13 gi|336253335|ref|YP_004596442.1| - 0.063 13.6 0.0 0.08 13.3 0.0 1.1 1 0 0 1 1 1 0 Pirin C-terminal cupin domain cNMP_binding PF00027.29 gi|336253335|ref|YP_004596442.1| - 0.089 12.9 0.0 0.13 12.3 0.0 1.3 1 0 0 1 1 1 0 Cyclic nucleotide-binding domain zf-CDGSH PF09360.10 gi|336253337|ref|YP_004596444.1| - 1.9e-11 44.0 0.9 3e-11 43.3 0.2 1.7 2 0 0 2 2 2 1 Iron-binding zinc finger CDGSH type E1-E2_ATPase PF00122.20 gi|336253338|ref|YP_004596445.1| - 1.4e-45 155.1 1.4 2.7e-45 154.1 1.4 1.5 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.26 gi|336253338|ref|YP_004596445.1| - 6.6e-31 108.2 7.1 1.7e-30 106.9 7.1 1.8 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|336253338|ref|YP_004596445.1| - 9.7e-08 32.3 0.0 3.2e-07 30.7 0.0 2.0 1 0 0 1 1 1 1 Heavy-metal-associated domain Hydrolase_3 PF08282.12 gi|336253338|ref|YP_004596445.1| - 3.2e-05 23.8 1.3 7.5e-05 22.6 1.3 1.5 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase ATPase-cat_bd PF12156.8 gi|336253338|ref|YP_004596445.1| - 0.067 13.9 0.4 0.067 13.9 0.4 1.7 2 0 0 2 2 2 0 Putative metal-binding domain of cation transport ATPase SPC25 PF06703.11 gi|336253340|ref|YP_004596447.1| - 0.047 13.5 0.1 0.052 13.3 0.1 1.1 1 0 0 1 1 1 0 Microsomal signal peptidase 25 kDa subunit (SPC25) Orf78 PF06024.12 gi|336253340|ref|YP_004596447.1| - 0.18 12.1 0.0 0.21 11.9 0.0 1.2 1 0 0 1 1 1 0 Orf78 (ac78) COX2 PF00116.20 gi|336253341|ref|YP_004596448.1| - 1.1e-10 41.4 0.0 1.8e-10 40.7 0.0 1.3 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, periplasmic domain Cupredoxin_1 PF13473.6 gi|336253341|ref|YP_004596448.1| - 3.3e-09 36.8 0.2 1.4e-08 34.8 0.0 2.0 2 1 1 3 3 3 1 Cupredoxin-like domain Big_3_5 PF16640.5 gi|336253341|ref|YP_004596448.1| - 0.002 18.3 1.1 0.023 14.9 0.4 2.3 2 0 0 2 2 2 1 Bacterial Ig-like domain (group 3) COX2-transmemb PF09125.10 gi|336253341|ref|YP_004596448.1| - 0.096 12.5 0.6 0.16 11.8 0.6 1.3 1 0 0 1 1 1 0 Cytochrome C oxidase subunit II, transmembrane COX1 PF00115.20 gi|336253342|ref|YP_004596449.1| - 2.4e-89 300.2 68.6 9e-89 298.3 63.6 2.0 1 1 1 2 2 2 2 Cytochrome C and Quinol oxidase polypeptide I DUF883 PF05957.13 gi|336253344|ref|YP_004596451.1| - 0.0014 19.2 2.1 0.002 18.7 2.1 1.4 1 1 0 1 1 1 1 Bacterial protein of unknown function (DUF883) LRS4 PF10422.9 gi|336253345|ref|YP_004596452.1| - 0.014 15.0 0.4 0.019 14.5 0.4 1.1 1 0 0 1 1 1 0 Monopolin complex subunit LRS4 Nup54_57_C PF18570.1 gi|336253345|ref|YP_004596452.1| - 0.1 12.2 0.9 0.2 11.3 0.9 1.5 1 0 0 1 1 1 0 NUP57/Nup54 C-terminal domain HalOD1 PF18545.1 gi|336253347|ref|YP_004596454.1| - 1.3e-25 89.5 0.1 1.5e-25 89.3 0.1 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 E1-E2_ATPase PF00122.20 gi|336253348|ref|YP_004596455.1| - 2.6e-42 144.4 0.3 2.6e-42 144.4 0.3 2.7 3 0 0 3 3 3 1 E1-E2 ATPase Hydrolase PF00702.26 gi|336253348|ref|YP_004596455.1| - 7.4e-28 98.3 4.3 1e-27 97.8 2.8 2.1 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|336253348|ref|YP_004596455.1| - 4e-07 30.4 0.0 4.7e-05 23.8 0.0 3.3 3 0 0 3 3 3 1 Heavy-metal-associated domain Hydrolase_3 PF08282.12 gi|336253348|ref|YP_004596455.1| - 6.5e-05 22.8 0.2 0.00012 21.9 0.2 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase ATPase-cat_bd PF12156.8 gi|336253348|ref|YP_004596455.1| - 0.077 13.7 0.2 0.16 12.7 0.2 1.5 1 0 0 1 1 1 0 Putative metal-binding domain of cation transport ATPase RseC_MucC PF04246.12 gi|336253348|ref|YP_004596455.1| - 0.087 12.8 2.5 0.45 10.5 2.5 2.2 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC COX3 PF00510.18 gi|336253349|ref|YP_004596456.1| - 3e-31 109.2 16.5 4.4e-31 108.7 16.5 1.3 1 1 0 1 1 1 1 Cytochrome c oxidase subunit III ThrE PF06738.12 gi|336253350|ref|YP_004596457.1| - 0.67 9.3 13.1 0.93 8.8 13.1 1.1 1 0 0 1 1 1 0 Putative threonine/serine exporter DUF2976 PF11190.8 gi|336253350|ref|YP_004596457.1| - 1.2 9.0 11.5 0.085 12.7 2.7 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2976) ABC2_membrane_3 PF12698.7 gi|336253351|ref|YP_004596458.1| - 2.4 7.2 8.0 2.9 6.9 8.0 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF2207 PF09972.9 gi|336253352|ref|YP_004596459.1| - 0.012 14.5 0.1 0.012 14.5 0.1 1.6 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) MNHE PF01899.16 gi|336253352|ref|YP_004596459.1| - 0.096 12.4 0.2 0.096 12.4 0.2 2.2 2 0 0 2 2 2 0 Na+/H+ ion antiporter subunit COX1 PF00115.20 gi|336253353|ref|YP_004596460.1| - 8.4e-140 466.4 56.8 1.3e-139 465.8 56.8 1.3 1 0 0 1 1 1 1 Cytochrome C and Quinol oxidase polypeptide I COX2 PF00116.20 gi|336253355|ref|YP_004596462.1| - 1.1e-15 57.5 0.3 1.3e-14 54.1 0.0 2.3 2 1 1 3 3 3 2 Cytochrome C oxidase subunit II, periplasmic domain COX2_TM PF02790.15 gi|336253355|ref|YP_004596462.1| - 6.9e-11 42.1 0.2 1.1e-10 41.5 0.2 1.3 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, transmembrane domain CwsA PF10814.8 gi|336253355|ref|YP_004596462.1| - 0.0081 16.3 0.8 0.013 15.6 0.5 1.5 1 1 0 1 1 1 1 Cell wall synthesis protein CwsA DUF3413 PF11893.8 gi|336253355|ref|YP_004596462.1| - 0.012 14.8 0.1 0.02 14.1 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3413) AA_permease_2 PF13520.6 gi|336253355|ref|YP_004596462.1| - 0.064 12.1 0.7 0.13 11.0 0.7 1.5 1 1 0 1 1 1 0 Amino acid permease Cupredoxin_1 PF13473.6 gi|336253355|ref|YP_004596462.1| - 0.1 12.7 0.0 0.23 11.6 0.0 1.5 1 0 0 1 1 1 0 Cupredoxin-like domain TrbC PF04956.13 gi|336253355|ref|YP_004596462.1| - 0.26 11.5 5.7 0.65 10.2 5.1 1.8 1 1 1 2 2 2 0 TrbC/VIRB2 family CitMHS PF03600.16 gi|336253355|ref|YP_004596462.1| - 0.96 8.6 7.7 6.9 5.8 8.6 1.6 1 1 1 2 2 2 0 Citrate transporter RseC_MucC PF04246.12 gi|336253356|ref|YP_004596463.1| - 0.13 12.2 0.7 0.14 12.1 0.7 1.1 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC Phage_holin_2_2 PF10746.9 gi|336253357|ref|YP_004596464.1| - 0.091 12.4 0.3 0.094 12.4 0.3 1.2 1 0 0 1 1 1 0 Phage holin T7 family, holin superfamily II Form_Nir_trans PF01226.17 gi|336253358|ref|YP_004596465.1| - 7.6e-43 146.5 20.1 8.9e-43 146.3 20.1 1.0 1 0 0 1 1 1 1 Formate/nitrite transporter OsmC PF02566.19 gi|336253359|ref|YP_004596466.1| - 3.3e-23 82.0 0.1 2.1e-22 79.5 0.0 1.8 2 0 0 2 2 2 1 OsmC-like protein Pyr_redox_2 PF07992.14 gi|336253360|ref|YP_004596467.1| - 8.5e-50 169.6 0.3 1.3e-49 169.1 0.3 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|336253360|ref|YP_004596467.1| - 5.6e-23 81.3 0.2 9.5e-23 80.6 0.2 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 gi|336253360|ref|YP_004596467.1| - 3.6e-19 69.1 0.3 1e-14 54.8 0.0 2.7 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase K_oxygenase PF13434.6 gi|336253360|ref|YP_004596467.1| - 0.00013 21.3 0.0 0.00072 18.8 0.0 2.1 3 0 0 3 3 3 1 L-lysine 6-monooxygenase (NADPH-requiring) Gcw_chp PF09694.10 gi|336253360|ref|YP_004596467.1| - 0.0074 16.3 0.1 0.018 15.0 0.1 1.6 1 1 1 2 2 2 1 Bacterial protein of unknown function (Gcw_chp) FAD_binding_2 PF00890.24 gi|336253360|ref|YP_004596467.1| - 0.013 14.6 4.8 0.014 14.5 0.9 2.4 2 1 0 2 2 2 0 FAD binding domain 3HCDH_N PF02737.18 gi|336253360|ref|YP_004596467.1| - 0.035 14.0 0.2 2.7 7.8 0.0 2.7 3 0 0 3 3 3 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Bac_transf PF02397.16 gi|336253360|ref|YP_004596467.1| - 0.16 11.6 0.0 0.25 10.9 0.0 1.2 1 0 0 1 1 1 0 Bacterial sugar transferase DrsE PF02635.15 gi|336253361|ref|YP_004596468.1| - 4.9e-07 30.1 0.1 5.6e-07 29.9 0.1 1.0 1 0 0 1 1 1 1 DsrE/DsrF-like family Molybdop_Fe4S4 PF04879.16 gi|336253361|ref|YP_004596468.1| - 0.049 13.6 0.0 0.074 13.0 0.0 1.3 1 0 0 1 1 1 0 Molybdopterin oxidoreductase Fe4S4 domain Glyco_hydro_15 PF00723.21 gi|336253362|ref|YP_004596469.1| - 2.1e-49 168.5 0.0 1.2e-44 152.9 0.0 2.0 1 1 1 2 2 2 2 Glycosyl hydrolases family 15 PepSY_2 PF13670.6 gi|336253362|ref|YP_004596469.1| - 0.075 13.0 0.1 0.21 11.6 0.1 1.7 1 0 0 1 1 1 0 Peptidase propeptide and YPEB domain TPR_4 PF07721.14 gi|336253362|ref|YP_004596469.1| - 0.64 10.8 8.0 0.31 11.8 0.2 3.7 3 0 0 3 3 3 0 Tetratricopeptide repeat Abhydrolase_1 PF00561.20 gi|336253363|ref|YP_004596470.1| - 1.6e-25 90.2 0.2 1.4e-20 74.0 0.1 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|336253363|ref|YP_004596470.1| - 1e-19 72.0 1.2 1.3e-19 71.7 1.2 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|336253363|ref|YP_004596470.1| - 5.3e-12 45.5 0.1 5.6e-11 42.2 0.1 2.0 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Ndr PF03096.14 gi|336253363|ref|YP_004596470.1| - 9.7e-05 21.2 0.0 0.00015 20.6 0.0 1.2 1 0 0 1 1 1 1 Ndr family Abhydrolase_4 PF08386.10 gi|336253363|ref|YP_004596470.1| - 0.11 12.6 0.0 0.26 11.4 0.0 1.6 1 0 0 1 1 1 0 TAP-like protein HTH_24 PF13412.6 gi|336253364|ref|YP_004596471.1| - 1.8e-07 30.6 0.0 2.8e-07 30.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|336253364|ref|YP_004596471.1| - 4.8e-07 29.6 0.3 7e-07 29.1 0.3 1.2 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|336253364|ref|YP_004596471.1| - 1.3e-06 28.2 0.0 1.6e-06 27.9 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|336253364|ref|YP_004596471.1| - 3.6e-05 23.7 0.2 6.7e-05 22.9 0.1 1.5 2 0 0 2 2 1 1 Helix-turn-helix domain PaaX PF07848.12 gi|336253364|ref|YP_004596471.1| - 4.1e-05 23.7 0.1 5.2e-05 23.4 0.1 1.2 1 0 0 1 1 1 1 PaaX-like protein TFIIE_alpha PF02002.17 gi|336253364|ref|YP_004596471.1| - 4.3e-05 23.3 0.0 5.1e-05 23.1 0.0 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit GntR PF00392.21 gi|336253364|ref|YP_004596471.1| - 0.0001 21.9 0.2 0.00013 21.5 0.2 1.2 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_27 PF13463.6 gi|336253364|ref|YP_004596471.1| - 0.00012 22.4 0.0 0.00015 22.2 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 gi|336253364|ref|YP_004596471.1| - 0.00026 20.9 0.0 0.0003 20.7 0.0 1.2 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain PadR PF03551.14 gi|336253364|ref|YP_004596471.1| - 0.00044 20.1 0.0 0.00096 19.1 0.0 1.5 1 1 1 2 2 2 1 Transcriptional regulator PadR-like family Rrf2 PF02082.20 gi|336253364|ref|YP_004596471.1| - 0.00045 20.5 0.0 0.00066 20.0 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator Replic_Relax PF13814.6 gi|336253364|ref|YP_004596471.1| - 0.00065 19.8 0.0 0.0007 19.7 0.0 1.0 1 0 0 1 1 1 1 Replication-relaxation HTH_28 PF13518.6 gi|336253364|ref|YP_004596471.1| - 0.00089 19.3 0.0 0.0018 18.3 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|336253364|ref|YP_004596471.1| - 0.0018 18.1 0.0 0.0025 17.6 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|336253364|ref|YP_004596471.1| - 0.0019 18.0 0.2 0.0029 17.4 0.2 1.4 1 1 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.12 gi|336253364|ref|YP_004596471.1| - 0.0028 17.5 0.0 0.0041 17.0 0.0 1.2 1 0 0 1 1 1 1 HTH domain HTH_23 PF13384.6 gi|336253364|ref|YP_004596471.1| - 0.0035 17.1 0.0 0.005 16.6 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain HTH_AsnC-type PF13404.6 gi|336253364|ref|YP_004596471.1| - 0.0037 17.1 0.3 0.0095 15.7 0.1 1.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain Sigma70_r4 PF04545.16 gi|336253364|ref|YP_004596471.1| - 0.0038 16.7 0.0 0.0066 15.9 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_43 PF09904.9 gi|336253364|ref|YP_004596471.1| - 0.005 16.8 0.0 0.0057 16.6 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn helix Sigma70_r4_2 PF08281.12 gi|336253364|ref|YP_004596471.1| - 0.0055 16.3 0.0 0.007 16.0 0.0 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_CodY PF08222.11 gi|336253364|ref|YP_004596471.1| - 0.0099 15.4 0.0 0.013 15.0 0.0 1.1 1 0 0 1 1 1 1 CodY helix-turn-helix domain HTH_29 PF13551.6 gi|336253364|ref|YP_004596471.1| - 0.01 15.8 0.0 0.013 15.5 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix HTH_Mga PF08280.11 gi|336253364|ref|YP_004596471.1| - 0.013 15.5 0.0 0.017 15.2 0.0 1.1 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain HxlR PF01638.17 gi|336253364|ref|YP_004596471.1| - 0.015 15.1 0.0 0.017 14.9 0.0 1.1 1 0 0 1 1 1 0 HxlR-like helix-turn-helix MarR PF01047.22 gi|336253364|ref|YP_004596471.1| - 0.022 14.7 0.0 0.026 14.4 0.0 1.2 1 0 0 1 1 1 0 MarR family HTH_47 PF16221.5 gi|336253364|ref|YP_004596471.1| - 0.028 14.0 0.0 0.037 13.6 0.0 1.2 1 0 0 1 1 1 0 winged helix-turn-helix HTH_9 PF08221.11 gi|336253364|ref|YP_004596471.1| - 0.034 14.2 0.0 0.057 13.5 0.0 1.4 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain Cdc6_C PF09079.11 gi|336253364|ref|YP_004596471.1| - 0.045 13.7 0.0 0.057 13.4 0.0 1.1 1 0 0 1 1 1 0 CDC6, C terminal winged helix domain HTH_54 PF18607.1 gi|336253364|ref|YP_004596471.1| - 0.067 13.3 0.0 0.077 13.1 0.0 1.1 1 0 0 1 1 1 0 ParA helix turn helix domain DUF2250 PF10007.9 gi|336253364|ref|YP_004596471.1| - 0.076 13.1 0.0 0.16 12.1 0.0 1.6 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_36 PF13730.6 gi|336253364|ref|YP_004596471.1| - 0.084 12.8 0.0 0.3 11.1 0.0 1.9 1 1 0 1 1 1 0 Helix-turn-helix domain Fe_dep_repress PF01325.19 gi|336253364|ref|YP_004596471.1| - 0.14 12.3 0.0 0.32 11.2 0.0 1.6 2 0 0 2 2 1 0 Iron dependent repressor, N-terminal DNA binding domain DUF505 PF04458.12 gi|336253364|ref|YP_004596471.1| - 0.2 10.0 0.0 0.2 10.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) DUF1028 PF06267.12 gi|336253365|ref|YP_004596472.1| - 2.6e-67 226.4 0.2 3e-67 226.1 0.2 1.0 1 0 0 1 1 1 1 Family of unknown function (DUF1028) SepF PF04472.12 gi|336253366|ref|YP_004596473.1| - 3.3e-16 59.3 2.3 3.3e-16 59.3 2.3 1.6 2 0 0 2 2 2 1 Cell division protein SepF Lar_N PF09861.9 gi|336253366|ref|YP_004596473.1| - 0.034 13.3 0.3 0.041 13.0 0.3 1.2 1 0 0 1 1 1 0 Lactate racemase N-terminal domain Rx_N PF18052.1 gi|336253366|ref|YP_004596473.1| - 0.07 13.4 1.4 0.15 12.3 1.2 1.7 1 1 0 1 1 1 0 Rx N-terminal domain DUF2826 PF11442.8 gi|336253367|ref|YP_004596474.1| - 0.12 12.2 1.7 0.14 12.0 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2826) MdcE PF06833.11 gi|336253367|ref|YP_004596474.1| - 0.19 11.2 2.1 0.36 10.3 2.1 1.4 1 0 0 1 1 1 0 Malonate decarboxylase gamma subunit (MdcE) Sugar_tr PF00083.24 gi|336253367|ref|YP_004596474.1| - 1.2 7.9 4.9 0.49 9.2 1.6 1.9 2 0 0 2 2 2 0 Sugar (and other) transporter NIR_SIR PF01077.22 gi|336253368|ref|YP_004596475.1| - 6.7e-43 145.9 0.0 4.3e-36 123.8 0.0 2.4 2 0 0 2 2 2 2 Nitrite and sulphite reductase 4Fe-4S domain Rhodanese PF00581.20 gi|336253368|ref|YP_004596475.1| - 1.6e-36 125.1 0.0 7.8e-17 61.7 0.0 2.5 2 0 0 2 2 2 2 Rhodanese-like domain NIR_SIR_ferr PF03460.17 gi|336253368|ref|YP_004596475.1| - 3.1e-32 110.2 4.7 1e-14 54.1 0.3 4.4 4 1 0 4 4 4 2 Nitrite/Sulfite reductase ferredoxin-like half domain DGC PF08859.11 gi|336253368|ref|YP_004596475.1| - 0.21 11.7 0.6 2.7 8.1 0.0 2.5 2 1 0 2 2 2 0 DGC domain FrhB_FdhB_C PF04432.13 gi|336253369|ref|YP_004596476.1| - 3.1e-30 105.0 0.0 3.1e-30 105.0 0.0 1.9 2 1 0 2 2 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|336253369|ref|YP_004596476.1| - 2.5e-20 72.4 0.2 5.2e-20 71.4 0.2 1.5 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_21 PF14697.6 gi|336253369|ref|YP_004596476.1| - 9.4e-10 38.5 8.6 9.4e-10 38.5 8.6 1.6 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|336253369|ref|YP_004596476.1| - 1.8e-07 31.2 14.2 3.1e-07 30.4 12.5 2.3 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|336253369|ref|YP_004596476.1| - 3.8e-07 30.2 9.6 3.8e-07 30.2 9.6 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|336253369|ref|YP_004596476.1| - 3.9e-07 30.9 7.1 0.023 15.6 2.1 3.4 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|336253369|ref|YP_004596476.1| - 7.4e-07 29.6 2.4 0.0054 17.2 0.3 2.7 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|336253369|ref|YP_004596476.1| - 9.5e-07 29.3 22.5 4.5e-05 24.0 11.9 2.7 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4 PF00037.27 gi|336253369|ref|YP_004596476.1| - 2.5e-06 27.0 18.2 0.00011 21.8 3.9 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|336253369|ref|YP_004596476.1| - 1.6e-05 25.0 17.6 0.00084 19.7 4.4 3.3 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|336253369|ref|YP_004596476.1| - 0.00055 20.1 2.0 0.0013 18.9 2.0 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|336253369|ref|YP_004596476.1| - 0.00059 19.8 4.7 0.00059 19.8 4.7 3.1 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_2 PF12797.7 gi|336253369|ref|YP_004596476.1| - 0.0008 19.4 3.8 0.0008 19.4 3.8 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_13 PF13370.6 gi|336253369|ref|YP_004596476.1| - 0.0023 18.4 12.2 0.58 10.7 5.8 3.1 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_20 PF14691.6 gi|336253369|ref|YP_004596476.1| - 0.0043 16.8 0.6 0.0043 16.8 0.6 1.8 2 0 0 2 2 1 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_15 PF13459.6 gi|336253369|ref|YP_004596476.1| - 0.011 16.5 9.4 0.28 12.0 0.9 3.7 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_8 PF13183.6 gi|336253369|ref|YP_004596476.1| - 0.025 15.0 14.2 0.49 10.9 4.0 2.7 2 1 2 4 4 3 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|336253369|ref|YP_004596476.1| - 3.4 8.8 20.9 0.22 12.6 4.4 2.9 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_22 PF17179.4 gi|336253369|ref|YP_004596476.1| - 7.6 7.5 17.6 0.77 10.6 2.7 2.7 2 1 1 3 3 3 0 4Fe-4S dicluster domain HTH_10 PF04967.12 gi|336253370|ref|YP_004596477.1| - 7.8e-21 73.6 0.1 1.4e-20 72.8 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_5 PF01022.20 gi|336253370|ref|YP_004596477.1| - 0.0076 16.1 0.0 0.33 10.9 0.0 2.3 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family GerE PF00196.19 gi|336253370|ref|YP_004596477.1| - 0.0083 15.7 0.1 0.072 12.6 0.1 2.1 1 1 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4 PF04545.16 gi|336253370|ref|YP_004596477.1| - 0.024 14.1 0.3 0.13 11.8 0.0 2.4 3 0 0 3 3 3 0 Sigma-70, region 4 HTH_IclR PF09339.10 gi|336253370|ref|YP_004596477.1| - 0.025 14.4 0.0 2.5 8.0 0.0 2.5 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_40 PF14493.6 gi|336253370|ref|YP_004596477.1| - 0.034 14.6 0.1 0.24 11.9 0.0 2.2 1 1 1 2 2 2 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|336253370|ref|YP_004596477.1| - 0.11 12.3 0.0 0.44 10.4 0.0 2.0 3 0 0 3 3 3 0 Homeodomain-like domain Citrate_synt PF00285.21 gi|336253371|ref|YP_004596478.1| - 7.8e-130 433.1 0.0 8.9e-130 432.9 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase, C-terminal domain DUF1974 PF09317.11 gi|336253371|ref|YP_004596478.1| - 0.13 11.8 0.4 13 5.3 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1974) Glyco_hydro_2 PF00703.21 gi|336253373|ref|YP_004596480.1| - 0.021 15.5 0.8 1.6 9.5 0.1 2.3 2 0 0 2 2 2 0 Glycosyl hydrolases family 2 NPCBM_assoc PF10633.9 gi|336253373|ref|YP_004596480.1| - 0.14 12.5 4.4 0.3 11.3 0.2 2.6 2 0 0 2 2 2 0 NPCBM-associated, NEW3 domain of alpha-galactosidase Calycin_like PF13944.6 gi|336253373|ref|YP_004596480.1| - 0.44 10.9 2.9 9.3 6.6 0.1 2.3 2 0 0 2 2 2 0 Calycin-like beta-barrel domain DUF4330 PF14221.6 gi|336253373|ref|YP_004596480.1| - 1.1 9.5 5.0 1.8 8.8 1.7 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4330) GGACT PF06094.12 gi|336253374|ref|YP_004596481.1| - 8.5e-17 61.9 0.0 1.1e-16 61.6 0.0 1.1 1 0 0 1 1 1 1 Gamma-glutamyl cyclotransferase, AIG2-like AIG2_2 PF13772.6 gi|336253374|ref|YP_004596481.1| - 3.1e-05 24.3 0.0 5e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 AIG2-like family PALP PF00291.25 gi|336253375|ref|YP_004596482.1| - 2.3e-84 283.3 7.3 2.8e-84 283.0 7.3 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACT PF01842.25 gi|336253375|ref|YP_004596482.1| - 0.0022 17.7 0.0 0.008 15.9 0.0 2.0 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.6 gi|336253375|ref|YP_004596482.1| - 0.0054 17.3 0.0 0.038 14.6 0.0 2.3 2 0 0 2 2 2 1 ACT domain YhfZ_C PF14503.6 gi|336253375|ref|YP_004596482.1| - 0.064 12.8 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 YhfZ C-terminal domain FtsA PF14450.6 gi|336253375|ref|YP_004596482.1| - 0.082 13.3 0.3 0.18 12.2 0.3 1.6 1 0 0 1 1 1 0 Cell division protein FtsA Pep_deformylase PF01327.21 gi|336253375|ref|YP_004596482.1| - 0.096 12.3 1.4 1.8 8.1 0.1 2.5 1 1 1 2 2 2 0 Polypeptide deformylase Ribonuc_L-PSP PF01042.21 gi|336253376|ref|YP_004596483.1| - 1.1e-38 132.0 0.0 1.2e-38 131.8 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP YjgF_endoribonc PF14588.6 gi|336253376|ref|YP_004596483.1| - 0.054 13.6 0.1 0.087 13.0 0.1 1.5 1 1 0 1 1 1 0 YjgF/chorismate_mutase-like, putative endoribonuclease DUF5493 PF17597.2 gi|336253377|ref|YP_004596484.1| - 0.073 13.3 2.0 0.12 12.6 2.0 1.5 1 1 0 1 1 1 0 Family of unknown function (DUF5493) DUF2721 PF11026.8 gi|336253377|ref|YP_004596484.1| - 0.17 11.8 3.8 0.24 11.3 3.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2721) DUF2749 PF10907.8 gi|336253377|ref|YP_004596484.1| - 1.3 9.3 4.8 0.55 10.4 1.9 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF2749) adh_short_C2 PF13561.6 gi|336253378|ref|YP_004596485.1| - 1.8e-45 155.3 0.0 2.8e-45 154.7 0.0 1.2 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|336253378|ref|YP_004596485.1| - 2.3e-36 125.1 0.0 2.9e-36 124.8 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|336253378|ref|YP_004596485.1| - 2.2e-10 40.7 0.1 3e-10 40.3 0.1 1.2 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.6 gi|336253378|ref|YP_004596485.1| - 0.0074 16.2 0.1 0.01 15.7 0.1 1.2 1 0 0 1 1 1 1 NAD(P)H-binding GDP_Man_Dehyd PF16363.5 gi|336253378|ref|YP_004596485.1| - 0.093 12.1 0.0 0.14 11.5 0.0 1.3 1 0 0 1 1 1 0 GDP-mannose 4,6 dehydratase THF_DHG_CYH_C PF02882.19 gi|336253378|ref|YP_004596485.1| - 0.13 11.5 0.0 3.8 6.8 0.0 2.2 2 0 0 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ApbA PF02558.16 gi|336253378|ref|YP_004596485.1| - 0.19 11.3 0.0 0.3 10.7 0.0 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA ThiF PF00899.21 gi|336253379|ref|YP_004596486.1| - 2.5e-67 226.8 0.0 3.3e-67 226.4 0.0 1.0 1 0 0 1 1 1 1 ThiF family Sacchrp_dh_NADP PF03435.18 gi|336253379|ref|YP_004596486.1| - 0.0059 16.9 1.0 0.022 15.0 1.0 1.8 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain Shikimate_DH PF01488.20 gi|336253379|ref|YP_004596486.1| - 0.035 14.2 0.1 0.24 11.5 0.0 2.0 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase PglD_N PF17836.1 gi|336253379|ref|YP_004596486.1| - 0.19 12.4 0.1 0.39 11.4 0.1 1.6 1 0 0 1 1 1 0 PglD N-terminal domain DZR PF12773.7 gi|336253380|ref|YP_004596487.1| - 0.0032 17.4 0.5 0.0032 17.4 0.5 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|336253380|ref|YP_004596487.1| - 0.013 14.9 5.8 0.026 13.9 5.5 1.7 1 1 1 2 2 2 0 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|336253380|ref|YP_004596487.1| - 0.019 15.7 0.4 0.021 15.6 0.4 1.1 1 0 0 1 1 1 0 zinc-ribbon family RecR PF02132.15 gi|336253380|ref|YP_004596487.1| - 0.027 14.0 0.8 0.04 13.5 0.8 1.2 1 0 0 1 1 1 0 RecR protein DUF1610 PF07754.11 gi|336253380|ref|YP_004596487.1| - 0.14 12.2 3.3 3.7 7.6 0.5 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF1610) OrfB_Zn_ribbon PF07282.11 gi|336253380|ref|YP_004596487.1| - 0.26 11.2 3.1 1.3 9.0 3.1 1.9 1 1 0 1 1 1 0 Putative transposase DNA-binding domain UPF0547 PF10571.9 gi|336253380|ref|YP_004596487.1| - 0.4 10.8 5.7 2.4 8.3 5.7 2.0 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 Zn-ribbon_8 PF09723.10 gi|336253380|ref|YP_004596487.1| - 0.67 10.1 4.2 0.41 10.8 0.5 2.1 1 1 1 2 2 2 0 Zinc ribbon domain zf-C2H2_3 PF13878.6 gi|336253380|ref|YP_004596487.1| - 3.8 7.4 5.9 7.5 6.5 1.2 2.2 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO DZR PF12773.7 gi|336253381|ref|YP_004596488.1| - 0.0024 17.9 0.4 0.0032 17.4 0.4 1.2 1 0 0 1 1 1 1 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|336253381|ref|YP_004596488.1| - 0.012 15.7 1.8 0.022 14.9 1.8 1.5 1 1 0 1 1 1 0 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|336253381|ref|YP_004596488.1| - 0.013 14.9 0.7 3.1 7.3 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-HYPF PF07503.12 gi|336253381|ref|YP_004596488.1| - 0.051 13.4 1.9 0.67 9.8 0.1 2.2 2 0 0 2 2 2 0 HypF finger zinc_ribbon_2 PF13240.6 gi|336253381|ref|YP_004596488.1| - 0.06 13.1 3.8 0.92 9.3 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DCR PF14047.6 gi|336253381|ref|YP_004596488.1| - 0.06 13.6 0.5 0.072 13.3 0.5 1.2 1 0 0 1 1 1 0 Dppa2/4 conserved region DUF4428 PF14471.6 gi|336253381|ref|YP_004596488.1| - 0.099 12.6 0.1 0.21 11.5 0.0 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4428) A2L_zn_ribbon PF08792.10 gi|336253381|ref|YP_004596488.1| - 0.41 10.4 3.8 4.7 7.1 0.1 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain XPA_N PF01286.18 gi|336253381|ref|YP_004596488.1| - 0.62 10.2 4.5 4 7.6 0.0 2.1 2 0 0 2 2 2 0 XPA protein N-terminal RecR PF02132.15 gi|336253381|ref|YP_004596488.1| - 1.6 8.4 6.0 4.7 6.9 6.0 1.7 1 1 0 1 1 1 0 RecR protein UvrD-helicase PF00580.21 gi|336253382|ref|YP_004596489.1| - 3.3e-25 89.3 0.2 2.2e-11 43.8 0.0 2.4 2 0 0 2 2 2 2 UvrD/REP helicase N-terminal domain AAA_19 PF13245.6 gi|336253382|ref|YP_004596489.1| - 2e-24 86.6 0.0 1.1e-23 84.2 0.0 2.2 2 1 0 2 2 2 1 AAA domain UvrD_C PF13361.6 gi|336253382|ref|YP_004596489.1| - 5e-14 52.4 0.1 1.5e-08 34.4 0.0 2.3 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain AAA_30 PF13604.6 gi|336253382|ref|YP_004596489.1| - 1.6e-09 37.8 0.3 2.5e-05 24.1 0.0 3.0 3 0 0 3 3 3 2 AAA domain UvrD_C_2 PF13538.6 gi|336253382|ref|YP_004596489.1| - 2.2e-09 37.0 0.3 0.0034 17.2 0.0 2.8 3 0 0 3 3 3 2 UvrD-like helicase C-terminal domain Viral_helicase1 PF01443.18 gi|336253382|ref|YP_004596489.1| - 2.8e-05 24.0 0.2 4.2 7.0 0.0 4.2 4 1 0 4 4 4 2 Viral (Superfamily 1) RNA helicase AAA_11 PF13086.6 gi|336253382|ref|YP_004596489.1| - 0.0011 18.8 0.0 0.0028 17.5 0.0 1.7 1 0 0 1 1 1 1 AAA domain Herpes_ori_bp PF02399.15 gi|336253382|ref|YP_004596489.1| - 0.0018 16.4 0.0 0.0028 15.8 0.0 1.2 1 0 0 1 1 1 1 Origin of replication binding protein DEAD PF00270.29 gi|336253382|ref|YP_004596489.1| - 0.0024 17.7 0.1 1.1 9.0 0.0 2.7 3 0 0 3 3 3 1 DEAD/DEAH box helicase AAA_22 PF13401.6 gi|336253382|ref|YP_004596489.1| - 0.0039 17.4 0.1 2.1 8.6 0.0 3.2 3 0 0 3 3 3 1 AAA domain DUF2075 PF09848.9 gi|336253382|ref|YP_004596489.1| - 0.015 14.5 0.0 1.5 8.0 0.0 3.0 3 0 0 3 3 3 0 Uncharacterized conserved protein (DUF2075) AAA_25 PF13481.6 gi|336253382|ref|YP_004596489.1| - 0.12 12.0 1.0 0.41 10.2 0.0 2.4 3 0 0 3 3 3 0 AAA domain AAA_17 PF13207.6 gi|336253382|ref|YP_004596489.1| - 0.26 11.7 1.7 1.9 8.9 0.2 2.8 1 1 1 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|336253382|ref|YP_004596489.1| - 1.2 9.5 4.2 1.3 9.4 0.6 2.9 3 2 0 3 3 3 0 AAA ATPase domain Peptidase_M24 PF00557.24 gi|336253383|ref|YP_004596490.1| - 0.0016 18.2 0.1 0.0037 17.0 0.0 1.7 2 0 0 2 2 2 1 Metallopeptidase family M24 DUF4131 PF13567.6 gi|336253384|ref|YP_004596491.1| - 0.005 16.5 0.1 0.0061 16.2 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4131) Melittin PF01372.17 gi|336253384|ref|YP_004596491.1| - 0.11 12.5 0.6 0.27 11.2 0.6 1.7 1 0 0 1 1 1 0 Melittin Lum_binding PF00677.17 gi|336253385|ref|YP_004596492.1| - 4.3e-45 151.6 0.1 5.2e-22 77.6 0.0 2.0 2 0 0 2 2 2 2 Lumazine binding domain DUF5072 PF16807.5 gi|336253385|ref|YP_004596492.1| - 0.15 12.1 0.0 0.24 11.4 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF5072) ProQ_C PF17516.2 gi|336253386|ref|YP_004596493.1| - 0.19 11.2 0.2 0.42 10.1 0.2 1.5 1 0 0 1 1 1 0 ProQ C-terminal domain PrsW-protease PF13367.6 gi|336253387|ref|YP_004596494.1| - 1.5e-43 148.6 16.9 1.5e-43 148.6 16.9 2.4 2 1 1 3 3 3 1 PrsW family intramembrane metalloprotease Cyd_oper_YbgE PF09600.10 gi|336253387|ref|YP_004596494.1| - 9.8 6.6 13.3 1.5 9.3 0.6 3.6 2 1 1 3 3 3 0 Cyd operon protein YbgE (Cyd_oper_YbgE) DUF1906 PF08924.11 gi|336253388|ref|YP_004596495.1| - 0.00065 19.9 0.1 0.00069 19.8 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1906) DUF402 PF04167.13 gi|336253389|ref|YP_004596496.1| - 6e-17 61.6 2.4 1.5e-16 60.3 2.4 1.8 1 0 0 1 1 1 1 Protein of unknown function (DUF402) Form_Nir_trans PF01226.17 gi|336253390|ref|YP_004596497.1| - 3.7e-42 144.3 14.9 4.2e-42 144.1 14.9 1.0 1 0 0 1 1 1 1 Formate/nitrite transporter NUDIX PF00293.28 gi|336253391|ref|YP_004596498.1| - 4.5e-12 46.1 0.6 5.4e-12 45.9 0.6 1.1 1 0 0 1 1 1 1 NUDIX domain SBF PF01758.16 gi|336253392|ref|YP_004596499.1| - 6.5e-37 127.1 16.2 1.1e-36 126.3 16.2 1.4 1 0 0 1 1 1 1 Sodium Bile acid symporter family SBF_like PF13593.6 gi|336253392|ref|YP_004596499.1| - 6.6e-13 48.7 20.6 8e-13 48.4 20.6 1.1 1 0 0 1 1 1 1 SBF-like CPA transporter family (DUF4137) Mem_trans PF03547.18 gi|336253392|ref|YP_004596499.1| - 0.067 11.6 8.3 0.13 10.7 8.3 1.5 1 0 0 1 1 1 0 Membrane transport protein DUF3925 PF13063.6 gi|336253392|ref|YP_004596499.1| - 1.2 9.4 4.0 8.1 6.7 0.1 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF3925) DUF3325 PF11804.8 gi|336253394|ref|YP_004596501.1| - 0.011 15.9 6.9 0.013 15.7 6.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3325) Polysacc_synt PF01943.17 gi|336253394|ref|YP_004596501.1| - 0.021 14.2 0.5 0.024 14.0 0.5 1.0 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein Hexapep PF00132.24 gi|336253395|ref|YP_004596502.1| - 0.00033 20.3 5.5 1.1 9.1 0.2 3.6 3 0 0 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|336253395|ref|YP_004596502.1| - 0.47 10.2 8.3 2.1 8.2 0.2 3.0 3 2 0 3 3 3 0 Hexapeptide repeat of succinyl-transferase zinc_ribbon_2 PF13240.6 gi|336253396|ref|YP_004596503.1| - 0.013 15.2 3.6 0.033 13.9 3.6 1.7 1 1 0 1 1 1 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|336253396|ref|YP_004596503.1| - 0.013 14.9 5.6 0.015 14.7 2.4 2.1 1 1 1 2 2 2 0 zinc-ribbon domain DZR PF12773.7 gi|336253396|ref|YP_004596503.1| - 0.019 15.0 0.2 0.024 14.7 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon DNA_RNApol_7kD PF03604.13 gi|336253396|ref|YP_004596503.1| - 0.037 13.7 0.1 0.074 12.7 0.1 1.5 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit CpXC PF14353.6 gi|336253396|ref|YP_004596503.1| - 0.069 13.2 0.2 0.087 12.9 0.2 1.2 1 0 0 1 1 1 0 CpXC protein HalOD1 PF18545.1 gi|336253397|ref|YP_004596504.1| - 4.6e-27 94.1 0.1 6.2e-27 93.7 0.1 1.2 1 0 0 1 1 1 1 Halobacterial output domain 1 TraB PF01963.17 gi|336253398|ref|YP_004596505.1| - 0.035 14.0 0.0 9.8 6.0 0.0 2.1 2 0 0 2 2 2 0 TraB family HTH_Tnp_Mu_1 PF02316.16 gi|336253398|ref|YP_004596505.1| - 0.17 12.1 0.0 0.28 11.4 0.0 1.4 1 0 0 1 1 1 0 Mu DNA-binding domain eRF1_2 PF03464.15 gi|336253400|ref|YP_004596507.1| - 4.9e-43 146.6 0.0 1e-42 145.6 0.0 1.6 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.15 gi|336253400|ref|YP_004596507.1| - 1.4e-29 102.9 0.3 5.3e-29 101.0 0.1 2.2 2 0 0 2 2 2 1 eRF1 domain 3 acVLRF1 PF18859.1 gi|336253400|ref|YP_004596507.1| - 9.3e-18 64.8 0.5 2.5e-17 63.4 0.1 1.9 2 0 0 2 2 2 1 Actinobacteria/chloroflexi VLRF1 release factor baeRF_family10 PF18854.1 gi|336253400|ref|YP_004596507.1| - 9.3e-16 58.3 0.2 1e-14 55.0 0.0 2.5 2 1 1 3 3 3 1 Bacterial archaeo-eukaryotic release factor family 10 eRF1_1 PF03463.15 gi|336253400|ref|YP_004596507.1| - 1.8e-11 44.2 0.0 2.7e-11 43.6 0.0 1.3 1 0 0 1 1 1 1 eRF1 domain 1 TF_Zn_Ribbon PF08271.12 gi|336253400|ref|YP_004596507.1| - 0.00043 19.7 2.1 0.0014 18.1 2.1 2.0 1 0 0 1 1 1 1 TFIIB zinc-binding eIF-5_eIF-2B PF01873.17 gi|336253400|ref|YP_004596507.1| - 0.021 14.7 0.3 0.081 12.8 0.1 2.0 2 0 0 2 2 2 0 Domain found in IF2B/IF5 OrfB_Zn_ribbon PF07282.11 gi|336253400|ref|YP_004596507.1| - 0.047 13.6 1.5 0.11 12.5 1.5 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.10 gi|336253400|ref|YP_004596507.1| - 0.065 13.4 3.5 0.063 13.4 1.4 2.1 2 0 0 2 2 2 0 Zinc ribbon domain zf-IS66 PF13005.7 gi|336253400|ref|YP_004596507.1| - 0.2 12.1 4.5 4 7.9 0.2 3.0 3 0 0 3 3 3 0 zinc-finger binding domain of transposase IS66 Lar_restr_allev PF14354.6 gi|336253400|ref|YP_004596507.1| - 0.21 12.0 0.8 0.45 10.9 0.8 1.5 1 0 0 1 1 1 0 Restriction alleviation protein Lar zinc_ribbon_2 PF13240.6 gi|336253400|ref|YP_004596507.1| - 0.58 10.0 3.0 19 5.2 0.1 2.6 3 0 0 3 3 3 0 zinc-ribbon domain zf-Mss51 PF13824.6 gi|336253400|ref|YP_004596507.1| - 0.62 10.2 3.6 17 5.6 0.1 2.7 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 YhfH PF14149.6 gi|336253400|ref|YP_004596507.1| - 0.86 9.6 4.8 2.6 8.1 0.1 2.9 3 0 0 3 3 3 0 YhfH-like protein CbiA PF01656.23 gi|336253401|ref|YP_004596508.1| - 3.2e-22 78.9 0.1 4.8e-22 78.4 0.1 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|336253401|ref|YP_004596508.1| - 3.3e-22 79.2 1.5 1.5e-11 44.3 1.0 2.8 2 1 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase AAA_31 PF13614.6 gi|336253401|ref|YP_004596508.1| - 8.8e-21 74.6 0.0 1.4e-20 74.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain CBP_BcsQ PF06564.12 gi|336253401|ref|YP_004596508.1| - 9.7e-14 51.4 0.0 1.9e-13 50.5 0.0 1.4 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ Fer4_NifH PF00142.18 gi|336253401|ref|YP_004596508.1| - 1.4e-12 47.7 0.1 5.4e-12 45.7 0.1 1.7 1 1 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MipZ PF09140.11 gi|336253401|ref|YP_004596508.1| - 5.2e-09 35.8 0.9 1.4e-08 34.4 0.1 2.0 2 1 0 2 2 2 1 ATPase MipZ ArsA_ATPase PF02374.15 gi|336253401|ref|YP_004596508.1| - 6.9e-07 28.7 0.8 1.9e-05 24.0 2.0 2.0 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_26 PF13500.6 gi|336253401|ref|YP_004596508.1| - 3.4e-05 23.8 1.0 0.00082 19.3 0.0 2.4 2 0 0 2 2 2 1 AAA domain MeaB PF03308.16 gi|336253401|ref|YP_004596508.1| - 0.00017 20.7 2.9 0.00056 19.0 2.9 1.7 1 1 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB VirC1 PF07015.11 gi|336253401|ref|YP_004596508.1| - 0.0007 19.0 0.4 0.0012 18.2 0.4 1.3 1 0 0 1 1 1 1 VirC1 protein CLP1_P PF16575.5 gi|336253401|ref|YP_004596508.1| - 0.0025 17.7 0.1 0.0041 17.0 0.1 1.3 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_30 PF13604.6 gi|336253401|ref|YP_004596508.1| - 0.011 15.5 0.3 0.019 14.7 0.3 1.5 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|336253401|ref|YP_004596508.1| - 0.036 13.8 0.0 0.058 13.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain FTHFS PF01268.19 gi|336253401|ref|YP_004596508.1| - 0.081 11.1 1.3 0.12 10.5 1.3 1.1 1 0 0 1 1 1 0 Formate--tetrahydrofolate ligase SRP54 PF00448.22 gi|336253401|ref|YP_004596508.1| - 0.25 11.0 1.5 0.49 10.0 1.5 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain BSP_II PF05432.11 gi|336253402|ref|YP_004596509.1| - 0.28 10.9 10.4 0.35 10.5 10.4 1.1 1 0 0 1 1 1 0 Bone sialoprotein II (BSP-II) Nop14 PF04147.12 gi|336253402|ref|YP_004596509.1| - 3.9 5.6 8.5 4.3 5.4 8.5 1.0 1 0 0 1 1 1 0 Nop14-like family tRNA-synt_1d PF00750.19 gi|336253403|ref|YP_004596510.1| - 1.3e-37 129.6 0.5 1.8e-37 129.1 0.5 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (R) DALR_1 PF05746.15 gi|336253403|ref|YP_004596510.1| - 9.8e-32 109.6 0.1 6.4e-31 107.0 0.0 2.3 2 0 0 2 2 2 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.16 gi|336253403|ref|YP_004596510.1| - 1.2e-09 38.6 0.0 3.9e-09 37.0 0.0 1.9 1 0 0 1 1 1 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1f PF01921.18 gi|336253403|ref|YP_004596510.1| - 0.0099 14.8 0.0 0.094 11.6 0.0 2.1 2 0 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1g PF09334.11 gi|336253403|ref|YP_004596510.1| - 0.1 11.3 0.0 1.4 7.6 0.0 2.6 3 0 0 3 3 3 0 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|336253403|ref|YP_004596510.1| - 0.13 11.5 0.0 0.25 10.7 0.0 1.5 1 0 0 1 1 1 0 tRNA synthetases class I (C) catalytic domain PRK PF00485.18 gi|336253404|ref|YP_004596511.1| - 1.1e-48 165.6 0.1 1.4e-48 165.3 0.1 1.1 1 0 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family dNK PF01712.19 gi|336253404|ref|YP_004596511.1| - 2e-06 27.8 0.1 9e-06 25.7 0.1 1.8 1 1 0 1 1 1 1 Deoxynucleoside kinase CoaE PF01121.20 gi|336253404|ref|YP_004596511.1| - 0.00034 20.3 0.1 0.0094 15.6 0.0 2.1 2 0 0 2 2 2 1 Dephospho-CoA kinase Zeta_toxin PF06414.12 gi|336253404|ref|YP_004596511.1| - 0.00053 19.3 0.0 0.0011 18.3 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin AAA_18 PF13238.6 gi|336253404|ref|YP_004596511.1| - 0.0007 20.2 0.1 0.0014 19.2 0.1 1.6 1 1 0 1 1 1 1 AAA domain CPT PF07931.12 gi|336253404|ref|YP_004596511.1| - 0.0017 18.3 0.0 0.0044 16.9 0.0 2.0 2 1 0 2 2 2 1 Chloramphenicol phosphotransferase-like protein AAA_28 PF13521.6 gi|336253404|ref|YP_004596511.1| - 0.0039 17.4 0.0 0.0074 16.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain T2SSE PF00437.20 gi|336253404|ref|YP_004596511.1| - 0.0052 15.9 0.1 0.066 12.3 0.0 2.1 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_17 PF13207.6 gi|336253404|ref|YP_004596511.1| - 0.0052 17.2 0.9 1.7 9.1 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|336253404|ref|YP_004596511.1| - 0.018 15.2 0.0 0.031 14.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|336253404|ref|YP_004596511.1| - 0.023 15.2 0.0 0.031 14.8 0.0 1.3 1 0 0 1 1 1 0 ABC transporter Cytidylate_kin PF02224.18 gi|336253404|ref|YP_004596511.1| - 0.026 14.3 2.2 0.81 9.4 0.1 2.1 2 0 0 2 2 2 0 Cytidylate kinase T3SS_needle_reg PF09025.10 gi|336253404|ref|YP_004596511.1| - 0.028 14.4 0.1 0.044 13.8 0.1 1.2 1 0 0 1 1 1 0 YopR, type III needle-polymerisation regulator AAA_22 PF13401.6 gi|336253404|ref|YP_004596511.1| - 0.052 13.8 0.1 0.082 13.2 0.1 1.5 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|336253404|ref|YP_004596511.1| - 0.091 11.9 0.4 0.27 10.4 0.3 1.7 2 0 0 2 2 2 0 NB-ARC domain Ribosomal_60s PF00428.19 gi|336253404|ref|YP_004596511.1| - 0.099 13.2 2.0 0.2 12.3 2.0 1.4 1 0 0 1 1 1 0 60s Acidic ribosomal protein AAA PF00004.29 gi|336253404|ref|YP_004596511.1| - 0.14 12.6 0.0 0.29 11.6 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DUF348 PF03990.14 gi|336253404|ref|YP_004596511.1| - 0.73 9.6 5.4 0.19 11.5 1.7 1.8 2 0 0 2 2 2 0 G5-linked-Ubiquitin-like domain NUDIX PF00293.28 gi|336253405|ref|YP_004596512.1| - 2.2e-17 63.3 0.3 2.7e-17 63.1 0.3 1.1 1 0 0 1 1 1 1 NUDIX domain Nudix_N_2 PF14803.6 gi|336253405|ref|YP_004596512.1| - 8.4e-05 22.4 1.3 0.00018 21.3 1.3 1.6 1 0 0 1 1 1 1 Nudix N-terminal zf-TFIIB PF13453.6 gi|336253405|ref|YP_004596512.1| - 0.00092 18.5 1.3 0.0019 17.5 1.3 1.5 1 0 0 1 1 1 1 Transcription factor zinc-finger DZR PF12773.7 gi|336253405|ref|YP_004596512.1| - 0.0049 16.9 0.8 0.0078 16.2 0.8 1.3 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|336253405|ref|YP_004596512.1| - 0.053 13.0 3.7 3.3 7.3 0.4 2.3 2 0 0 2 2 2 0 zinc-ribbon domain YhfH PF14149.6 gi|336253405|ref|YP_004596512.1| - 0.082 12.9 0.6 3.5 7.7 0.1 2.2 2 0 0 2 2 2 0 YhfH-like protein DUF35_N PF12172.8 gi|336253405|ref|YP_004596512.1| - 0.097 12.6 6.3 2.3 8.2 0.9 2.7 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) TF_Zn_Ribbon PF08271.12 gi|336253405|ref|YP_004596512.1| - 0.11 12.1 2.3 0.33 10.5 2.3 1.9 1 1 0 1 1 1 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.6 gi|336253405|ref|YP_004596512.1| - 0.24 11.2 4.8 1.7 8.5 0.7 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|336253405|ref|YP_004596512.1| - 0.36 11.0 2.8 1.1 9.4 2.2 2.0 1 1 1 2 2 2 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|336253405|ref|YP_004596512.1| - 0.45 10.5 2.7 0.37 10.8 1.3 1.7 1 1 0 1 1 1 0 Transposase zinc-ribbon domain UPF0547 PF10571.9 gi|336253405|ref|YP_004596512.1| - 6.6 6.9 7.5 3.4 7.8 0.8 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 PALP PF00291.25 gi|336253406|ref|YP_004596513.1| - 8.7e-56 189.5 1.0 1e-55 189.3 1.0 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Capsid_VP7 PF17071.5 gi|336253406|ref|YP_004596513.1| - 0.039 13.2 0.0 0.057 12.7 0.0 1.1 1 0 0 1 1 1 0 Outer capsid protein VP7 ADK_lid PF05191.14 gi|336253406|ref|YP_004596513.1| - 0.21 11.6 0.9 0.45 10.5 0.9 1.5 1 0 0 1 1 1 0 Adenylate kinase, active site lid AstE_AspA PF04952.14 gi|336253407|ref|YP_004596514.1| - 1.8e-57 194.7 0.0 2.1e-57 194.5 0.0 1.0 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family SpoIIM PF01944.17 gi|336253408|ref|YP_004596515.1| - 2.3e-29 102.4 9.4 2.3e-29 102.4 9.4 3.4 2 1 1 3 3 3 1 Stage II sporulation protein M DUF4349 PF14257.6 gi|336253408|ref|YP_004596515.1| - 0.89 9.0 0.0 0.89 9.0 0.0 4.4 4 1 1 5 5 5 0 Domain of unknown function (DUF4349) Rhodanese PF00581.20 gi|336253409|ref|YP_004596516.1| - 3e-14 53.4 0.0 5.8e-14 52.5 0.0 1.4 1 0 0 1 1 1 1 Rhodanese-like domain Lactamase_B PF00753.27 gi|336253409|ref|YP_004596516.1| - 2.7e-11 43.9 3.6 2.7e-11 43.9 3.6 1.9 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|336253409|ref|YP_004596516.1| - 0.043 13.3 0.6 0.14 11.7 0.5 1.9 1 1 1 2 2 2 0 Beta-lactamase superfamily domain PTS_IIB PF02302.17 gi|336253409|ref|YP_004596516.1| - 0.08 13.7 0.0 0.38 11.5 0.0 2.2 2 0 0 2 2 2 0 PTS system, Lactose/Cellobiose specific IIB subunit Aldedh PF00171.22 gi|336253410|ref|YP_004596517.1| - 8.9e-155 515.7 1.4 1e-154 515.5 1.4 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family DUF3456 PF11938.8 gi|336253410|ref|YP_004596517.1| - 0.2 12.1 0.1 0.47 11.0 0.1 1.6 1 0 0 1 1 1 0 TLR4 regulator and MIR-interacting MSAP SnoaL_2 PF12680.7 gi|336253411|ref|YP_004596518.1| - 8.3e-18 64.9 6.4 9.8e-18 64.7 6.4 1.1 1 0 0 1 1 1 1 SnoaL-like domain DUF4440 PF14534.6 gi|336253411|ref|YP_004596518.1| - 8.1e-09 35.9 1.0 1.1e-08 35.5 1.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4440) SnoaL PF07366.12 gi|336253411|ref|YP_004596518.1| - 3e-07 30.3 1.3 7.3e-07 29.0 1.3 1.6 1 1 0 1 1 1 1 SnoaL-like polyketide cyclase SnoaL_4 PF13577.6 gi|336253411|ref|YP_004596518.1| - 1.6e-05 25.1 0.8 1.8e-05 24.9 0.8 1.1 1 0 0 1 1 1 1 SnoaL-like domain SnoaL_3 PF13474.6 gi|336253411|ref|YP_004596518.1| - 0.0017 18.6 0.1 0.0025 18.1 0.1 1.3 1 0 0 1 1 1 1 SnoaL-like domain Lumazine_bd_2 PF12893.7 gi|336253411|ref|YP_004596518.1| - 0.016 15.9 0.1 0.021 15.5 0.1 1.3 1 0 0 1 1 1 0 Putative lumazine-binding LEH PF07858.12 gi|336253411|ref|YP_004596518.1| - 0.021 14.9 0.9 0.039 14.1 0.9 1.4 1 1 0 1 1 1 0 Limonene-1,2-epoxide hydrolase catalytic domain NTF2 PF02136.20 gi|336253411|ref|YP_004596518.1| - 0.022 15.3 0.0 0.024 15.2 0.0 1.3 1 0 0 1 1 1 0 Nuclear transport factor 2 (NTF2) domain DUF4829 PF16111.5 gi|336253411|ref|YP_004596518.1| - 0.17 12.7 0.0 0.22 12.3 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4829) Rieske PF00355.26 gi|336253412|ref|YP_004596519.1| - 1.1e-12 47.7 0.0 2.2e-12 46.7 0.0 1.5 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Rieske_2 PF13806.6 gi|336253412|ref|YP_004596519.1| - 1.9e-12 47.0 0.0 3.8e-12 46.0 0.0 1.5 1 0 0 1 1 1 1 Rieske-like [2Fe-2S] domain Ribo_biogen_C PF04034.13 gi|336253413|ref|YP_004596520.1| - 9.3e-43 145.0 0.0 1.1e-42 144.7 0.0 1.1 1 0 0 1 1 1 1 Ribosome biogenesis protein, C-terminal RLI PF04068.15 gi|336253413|ref|YP_004596520.1| - 2.8e-06 27.1 0.1 5.4e-06 26.1 0.1 1.4 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI Ribosomal_L40e PF01020.17 gi|336253414|ref|YP_004596521.1| - 6.3e-09 35.6 5.3 7.4e-09 35.4 5.3 1.1 1 0 0 1 1 1 1 Ribosomal L40e family zinc_ribbon_2 PF13240.6 gi|336253414|ref|YP_004596521.1| - 0.00034 20.2 1.7 0.00044 19.9 1.7 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|336253414|ref|YP_004596521.1| - 0.0015 18.5 1.2 0.0016 18.4 1.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-CHY PF05495.12 gi|336253414|ref|YP_004596521.1| - 0.0017 18.8 0.9 0.0018 18.7 0.9 1.1 1 0 0 1 1 1 1 CHY zinc finger DNA_RNApol_7kD PF03604.13 gi|336253414|ref|YP_004596521.1| - 0.065 12.9 7.0 0.11 12.1 7.0 1.5 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Ribosomal_L37e PF01907.19 gi|336253414|ref|YP_004596521.1| - 0.096 12.9 4.9 0.13 12.4 4.9 1.3 1 1 0 1 1 1 0 Ribosomal protein L37e HypA PF01155.19 gi|336253414|ref|YP_004596521.1| - 0.14 12.2 1.4 0.15 12.1 1.4 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Rubredoxin_2 PF18073.1 gi|336253414|ref|YP_004596521.1| - 0.33 10.7 3.0 1 9.2 0.4 2.0 1 1 1 2 2 2 0 Rubredoxin metal binding domain DHHC PF01529.20 gi|336253414|ref|YP_004596521.1| - 0.5 10.5 2.0 0.54 10.4 2.0 1.1 1 0 0 1 1 1 0 DHHC palmitoyltransferase Lactamase_B PF00753.27 gi|336253415|ref|YP_004596522.1| - 6.7e-10 39.3 10.6 1.2e-07 32.0 10.6 2.3 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|336253415|ref|YP_004596522.1| - 0.00019 21.0 4.8 0.0013 18.2 4.8 2.2 1 1 0 1 1 1 1 Beta-lactamase superfamily domain ACP PF06857.11 gi|336253415|ref|YP_004596522.1| - 0.073 13.3 0.1 26 5.2 0.0 2.9 2 1 1 3 3 3 0 Malonate decarboxylase delta subunit (MdcD) DUF3168 PF11367.8 gi|336253415|ref|YP_004596522.1| - 0.099 12.8 0.5 0.21 11.8 0.5 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3168) DUF1967 PF09269.11 gi|336253415|ref|YP_004596522.1| - 0.1 12.6 0.0 0.41 10.6 0.0 2.0 1 0 0 1 1 1 0 Domain of unknown function (DUF1967) Lactamase_B_3 PF13483.6 gi|336253415|ref|YP_004596522.1| - 0.24 11.3 1.8 1.3 8.9 1.8 2.0 1 1 0 1 1 1 0 Beta-lactamase superfamily domain DUF99 PF01949.16 gi|336253417|ref|YP_004596524.1| - 2.6e-59 199.7 0.3 3e-59 199.5 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 UDG PF03167.19 gi|336253418|ref|YP_004596525.1| - 1.7e-36 125.5 0.0 2e-36 125.3 0.0 1.0 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily SnoaL_2 PF12680.7 gi|336253419|ref|YP_004596526.1| - 2.7e-20 72.9 3.1 3.3e-20 72.6 3.1 1.1 1 0 0 1 1 1 1 SnoaL-like domain SnoaL PF07366.12 gi|336253419|ref|YP_004596526.1| - 9.3e-11 41.6 0.4 2.9e-10 40.0 0.4 1.6 1 1 0 1 1 1 1 SnoaL-like polyketide cyclase SnoaL_4 PF13577.6 gi|336253419|ref|YP_004596526.1| - 2.5e-08 34.1 0.2 3e-08 33.8 0.2 1.2 1 0 0 1 1 1 1 SnoaL-like domain NTF2 PF02136.20 gi|336253419|ref|YP_004596526.1| - 2.8e-05 24.7 0.0 3.6e-05 24.3 0.0 1.3 1 0 0 1 1 1 1 Nuclear transport factor 2 (NTF2) domain DUF4440 PF14534.6 gi|336253419|ref|YP_004596526.1| - 0.0054 17.1 0.6 0.0069 16.8 0.6 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4440) SnoaL_3 PF13474.6 gi|336253419|ref|YP_004596526.1| - 0.0069 16.6 0.0 0.0098 16.2 0.0 1.4 1 1 0 1 1 1 1 SnoaL-like domain LEH PF07858.12 gi|336253419|ref|YP_004596526.1| - 0.066 13.3 0.1 0.091 12.9 0.1 1.2 1 0 0 1 1 1 0 Limonene-1,2-epoxide hydrolase catalytic domain GATase PF00117.28 gi|336253420|ref|YP_004596527.1| - 1.5e-23 83.5 0.0 2e-23 83.2 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.14 gi|336253420|ref|YP_004596527.1| - 9.8e-08 31.8 0.0 1.6e-07 31.2 0.0 1.3 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain SNO PF01174.19 gi|336253420|ref|YP_004596527.1| - 1e-06 28.7 0.0 2.5e-06 27.5 0.0 1.6 1 1 0 1 1 1 1 SNO glutamine amidotransferase family Peptidase_C26 PF07722.13 gi|336253420|ref|YP_004596527.1| - 0.00033 20.5 0.5 0.0055 16.5 0.5 2.4 1 1 0 1 1 1 1 Peptidase C26 DJ-1_PfpI PF01965.24 gi|336253420|ref|YP_004596527.1| - 0.0014 18.4 0.0 0.0023 17.8 0.0 1.3 1 0 0 1 1 1 1 DJ-1/PfpI family GATase_5 PF13507.6 gi|336253420|ref|YP_004596527.1| - 0.036 13.2 0.0 0.13 11.4 0.0 2.0 2 1 0 2 2 2 0 CobB/CobQ-like glutamine amidotransferase domain Cdc6_C PF09079.11 gi|336253421|ref|YP_004596528.1| - 6.1e-20 71.0 0.2 2.5e-19 69.0 0.0 2.1 2 0 0 2 2 2 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|336253421|ref|YP_004596528.1| - 1e-13 51.7 0.2 3.6e-13 50.0 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|336253421|ref|YP_004596528.1| - 1.5e-09 38.5 1.9 2.5e-09 37.7 0.0 2.2 2 2 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|336253421|ref|YP_004596528.1| - 2.6e-07 31.1 0.0 8.8e-07 29.4 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF815 PF05673.13 gi|336253421|ref|YP_004596528.1| - 3.1e-05 23.3 0.0 5.4e-05 22.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) Sigma54_activ_2 PF14532.6 gi|336253421|ref|YP_004596528.1| - 9.5e-05 22.5 0.2 0.0031 17.6 0.0 2.5 3 0 0 3 3 2 1 Sigma-54 interaction domain Sigma54_activat PF00158.26 gi|336253421|ref|YP_004596528.1| - 0.00015 21.5 0.0 0.00031 20.5 0.0 1.5 1 0 0 1 1 1 1 Sigma-54 interaction domain NACHT PF05729.12 gi|336253421|ref|YP_004596528.1| - 0.00016 21.7 0.0 0.00051 20.0 0.0 1.8 2 0 0 2 2 2 1 NACHT domain TniB PF05621.11 gi|336253421|ref|YP_004596528.1| - 0.00022 20.7 0.0 0.00043 19.7 0.0 1.4 1 0 0 1 1 1 1 Bacterial TniB protein DEAD PF00270.29 gi|336253421|ref|YP_004596528.1| - 0.0023 17.7 1.5 0.093 12.5 1.5 2.3 1 1 0 1 1 1 1 DEAD/DEAH box helicase ATPase_2 PF01637.18 gi|336253421|ref|YP_004596528.1| - 0.0039 17.1 0.4 0.0086 16.0 0.1 1.7 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_10 PF12846.7 gi|336253421|ref|YP_004596528.1| - 0.0043 16.0 0.5 0.026 13.4 0.0 2.1 2 0 0 2 2 2 1 AAA-like domain ATPase PF06745.13 gi|336253421|ref|YP_004596528.1| - 0.0084 15.5 0.1 0.019 14.3 0.1 1.6 1 1 0 1 1 1 1 KaiC DUF87 PF01935.17 gi|336253421|ref|YP_004596528.1| - 0.013 15.6 1.4 0.42 10.7 0.1 2.3 2 0 0 2 2 2 0 Helicase HerA, central domain AAA_25 PF13481.6 gi|336253421|ref|YP_004596528.1| - 0.014 14.9 0.0 0.033 13.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_2 PF07724.14 gi|336253421|ref|YP_004596528.1| - 0.02 15.0 0.1 0.041 14.0 0.1 1.4 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) IstB_IS21 PF01695.17 gi|336253421|ref|YP_004596528.1| - 0.025 14.3 0.1 0.1 12.3 0.1 2.0 1 1 0 1 1 1 0 IstB-like ATP binding protein FtsK_SpoIIIE PF01580.18 gi|336253421|ref|YP_004596528.1| - 0.027 13.8 0.1 0.26 10.6 0.0 2.2 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_5 PF07728.14 gi|336253421|ref|YP_004596528.1| - 0.034 14.1 0.8 0.37 10.8 0.8 2.4 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) Zot PF05707.12 gi|336253421|ref|YP_004596528.1| - 0.069 12.8 0.0 0.18 11.4 0.0 1.6 1 0 0 1 1 1 0 Zonular occludens toxin (Zot) AAA_assoc_2 PF16193.5 gi|336253421|ref|YP_004596528.1| - 0.08 13.3 1.7 0.96 9.8 1.6 2.5 1 1 0 1 1 1 0 AAA C-terminal domain RNA_helicase PF00910.22 gi|336253421|ref|YP_004596528.1| - 0.085 13.3 0.1 0.51 10.7 0.0 2.2 2 0 0 2 2 2 0 RNA helicase E2F_TDP PF02319.20 gi|336253421|ref|YP_004596528.1| - 0.092 12.8 0.1 0.34 11.0 0.1 2.0 1 1 0 1 1 1 0 E2F/DP family winged-helix DNA-binding domain PhoH PF02562.16 gi|336253421|ref|YP_004596528.1| - 0.11 11.9 0.1 11 5.5 0.0 2.3 2 0 0 2 2 2 0 PhoH-like protein AAA_7 PF12775.7 gi|336253421|ref|YP_004596528.1| - 0.16 11.5 0.1 0.27 10.7 0.1 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region FixS PF03597.15 gi|336253422|ref|YP_004596529.1| - 0.013 15.2 1.3 0.013 15.2 1.3 3.5 4 0 0 4 4 4 0 Cytochrome oxidase maturation protein cbb3-type SWIM PF04434.17 gi|336253423|ref|YP_004596530.1| - 0.012 15.3 4.4 0.18 11.5 4.4 2.1 1 1 0 1 1 1 0 SWIM zinc finger TRM PF02005.16 gi|336253424|ref|YP_004596531.1| - 7.6e-91 305.1 0.0 8.5e-91 304.9 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase PrmA PF06325.13 gi|336253424|ref|YP_004596531.1| - 1.9e-05 24.2 0.1 2.9e-05 23.6 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.14 gi|336253424|ref|YP_004596531.1| - 3.6e-05 23.4 0.0 6.7e-05 22.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.6 gi|336253424|ref|YP_004596531.1| - 0.00014 22.5 0.3 0.00036 21.2 0.3 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|336253424|ref|YP_004596531.1| - 0.00027 20.8 0.0 0.00043 20.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|336253424|ref|YP_004596531.1| - 0.0041 16.8 0.0 0.0066 16.1 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Zn-ribbon_8 PF09723.10 gi|336253424|ref|YP_004596531.1| - 0.006 16.7 1.7 0.019 15.1 1.7 1.8 1 0 0 1 1 1 1 Zinc ribbon domain UPF0020 PF01170.18 gi|336253424|ref|YP_004596531.1| - 0.022 14.5 0.0 0.036 13.7 0.0 1.3 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 Methyltransf_12 PF08242.12 gi|336253424|ref|YP_004596531.1| - 0.045 14.5 0.1 0.092 13.5 0.1 1.5 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_11 PF08241.12 gi|336253424|ref|YP_004596531.1| - 0.08 13.6 0.2 0.22 12.2 0.2 1.8 1 0 0 1 1 1 0 Methyltransferase domain Met_10 PF02475.16 gi|336253424|ref|YP_004596531.1| - 0.15 11.8 0.0 0.19 11.5 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein Lar_restr_allev PF14354.6 gi|336253424|ref|YP_004596531.1| - 0.22 11.9 1.9 3.3 8.1 0.1 3.2 3 0 0 3 3 3 0 Restriction alleviation protein Lar Zn_Tnp_IS1595 PF12760.7 gi|336253425|ref|YP_004596532.1| - 0.00084 19.3 0.4 0.67 10.0 0.0 2.1 2 0 0 2 2 2 2 Transposase zinc-ribbon domain Auto_anti-p27 PF06677.12 gi|336253425|ref|YP_004596532.1| - 0.016 15.3 2.4 0.85 9.8 0.3 2.2 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) CxC4 PF18717.1 gi|336253425|ref|YP_004596532.1| - 0.11 12.3 0.4 0.18 11.7 0.4 1.4 1 1 0 1 1 1 0 CxC4 like cysteine cluster associated with KDZ transposases zf-TFIIB PF13453.6 gi|336253425|ref|YP_004596532.1| - 0.3 10.5 0.2 0.3 10.5 0.2 2.2 2 0 0 2 2 2 0 Transcription factor zinc-finger zf-C2H2_3 PF13878.6 gi|336253425|ref|YP_004596532.1| - 0.35 10.7 2.7 5.9 6.8 0.1 2.2 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO Virul_fac_BrkB PF03631.15 gi|336253426|ref|YP_004596533.1| - 2.1e-39 135.7 27.5 2.1e-39 135.7 27.5 2.0 2 0 0 2 2 2 1 Virulence factor BrkB MAD PF05557.13 gi|336253426|ref|YP_004596533.1| - 0.016 13.6 1.6 0.022 13.2 1.6 1.1 1 0 0 1 1 1 0 Mitotic checkpoint protein DUF4349 PF14257.6 gi|336253426|ref|YP_004596533.1| - 0.045 13.2 0.0 0.045 13.2 0.0 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF4349) VIT1 PF01988.19 gi|336253426|ref|YP_004596533.1| - 0.052 13.4 0.0 0.052 13.4 0.0 3.4 3 1 0 3 3 3 0 VIT family DUF1690 PF07956.11 gi|336253426|ref|YP_004596533.1| - 0.25 11.8 1.8 0.39 11.1 1.8 1.2 1 0 0 1 1 1 0 Protein of Unknown function (DUF1690) Tmemb_cc2 PF10267.9 gi|336253426|ref|YP_004596533.1| - 0.99 8.5 3.4 1.4 8.0 3.4 1.1 1 0 0 1 1 1 0 Predicted transmembrane and coiled-coil 2 protein Atg14 PF10186.9 gi|336253426|ref|YP_004596533.1| - 1.9 7.5 5.0 2.7 7.0 5.0 1.1 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 Gln-synt_C PF00120.24 gi|336253427|ref|YP_004596534.1| - 4.4e-139 463.3 0.1 5.7e-139 462.9 0.1 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 gi|336253427|ref|YP_004596534.1| - 3.3e-32 110.1 0.1 6.8e-32 109.1 0.1 1.6 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain Gln-synt_N_2 PF16952.5 gi|336253427|ref|YP_004596534.1| - 0.00051 19.8 0.1 0.0039 17.0 0.1 2.2 1 1 0 1 1 1 1 Glutamine synthetase N-terminal domain AsnC_trans_reg PF01037.21 gi|336253428|ref|YP_004596535.1| - 4.3e-13 49.0 0.0 7.9e-13 48.2 0.0 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|336253428|ref|YP_004596535.1| - 1.7e-10 40.3 0.0 3.1e-10 39.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|336253428|ref|YP_004596535.1| - 1.5e-07 31.2 0.1 3.2e-07 30.1 0.1 1.5 2 0 0 2 2 1 1 Bacterial regulatory protein, arsR family HTH_AsnC-type PF13404.6 gi|336253428|ref|YP_004596535.1| - 6.7e-07 29.0 0.2 1.1e-06 28.3 0.2 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|336253428|ref|YP_004596535.1| - 3.8e-06 26.8 0.0 9.4e-06 25.5 0.0 1.7 2 0 0 2 2 1 1 HTH domain HTH_20 PF12840.7 gi|336253428|ref|YP_004596535.1| - 8.9e-06 25.7 0.1 1.8e-05 24.7 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|336253428|ref|YP_004596535.1| - 6.2e-05 22.7 0.0 0.00024 20.8 0.0 1.8 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_28 PF13518.6 gi|336253428|ref|YP_004596535.1| - 0.00066 19.7 0.0 0.0011 19.1 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|336253428|ref|YP_004596535.1| - 0.00072 19.4 0.0 0.0013 18.6 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|336253428|ref|YP_004596535.1| - 0.00079 19.3 0.0 0.0013 18.6 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain GntR PF00392.21 gi|336253428|ref|YP_004596535.1| - 0.0017 18.0 0.0 0.0032 17.1 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_10 PF04967.12 gi|336253428|ref|YP_004596535.1| - 0.0022 17.7 0.0 0.0044 16.8 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain Fe_dep_repress PF01325.19 gi|336253428|ref|YP_004596535.1| - 0.0088 16.2 0.0 0.018 15.3 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR PF01047.22 gi|336253428|ref|YP_004596535.1| - 0.01 15.8 0.0 0.022 14.7 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_IclR PF09339.10 gi|336253428|ref|YP_004596535.1| - 0.01 15.6 0.0 0.017 14.9 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|336253428|ref|YP_004596535.1| - 0.024 14.5 0.0 0.043 13.7 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_40 PF14493.6 gi|336253428|ref|YP_004596535.1| - 0.025 15.0 0.0 0.062 13.8 0.0 1.7 1 1 1 2 2 2 0 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|336253428|ref|YP_004596535.1| - 0.039 13.4 0.0 0.086 12.3 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 Mga PF05043.13 gi|336253428|ref|YP_004596535.1| - 0.058 14.0 0.0 0.14 12.7 0.0 1.6 2 0 0 2 2 1 0 Mga helix-turn-helix domain HTH_50 PF18024.1 gi|336253428|ref|YP_004596535.1| - 0.087 12.5 0.0 0.18 11.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_47 PF16221.5 gi|336253428|ref|YP_004596535.1| - 0.095 12.3 0.1 0.17 11.5 0.1 1.4 1 0 0 1 1 1 0 winged helix-turn-helix HTH_27 PF13463.6 gi|336253428|ref|YP_004596535.1| - 0.099 13.1 0.0 0.23 12.0 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_29 PF13551.6 gi|336253428|ref|YP_004596535.1| - 0.1 12.7 0.0 0.16 12.0 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix HTH_36 PF13730.6 gi|336253428|ref|YP_004596535.1| - 0.1 12.6 0.0 0.17 11.9 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Rrf2 PF02082.20 gi|336253428|ref|YP_004596535.1| - 0.11 12.9 0.0 0.24 11.8 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator DprA_WH PF17782.1 gi|336253428|ref|YP_004596535.1| - 0.12 12.5 0.2 0.25 11.5 0.2 1.5 1 0 0 1 1 1 0 DprA winged helix domain HTH_23 PF13384.6 gi|336253428|ref|YP_004596535.1| - 0.14 12.0 0.0 0.22 11.4 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain ABC_membrane PF00664.23 gi|336253429|ref|YP_004596536.1| - 7.4e-42 143.9 2.0 9.1e-42 143.6 2.0 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 gi|336253429|ref|YP_004596536.1| - 7.8e-36 123.6 0.0 1.5e-35 122.7 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_22 PF13401.6 gi|336253429|ref|YP_004596536.1| - 0.00049 20.4 0.2 0.0046 17.2 0.2 2.2 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|336253429|ref|YP_004596536.1| - 0.00093 18.7 0.1 0.025 14.0 0.0 2.1 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain Zeta_toxin PF06414.12 gi|336253429|ref|YP_004596536.1| - 0.0028 16.9 0.0 0.0078 15.5 0.0 1.7 1 0 0 1 1 1 1 Zeta toxin AAA_16 PF13191.6 gi|336253429|ref|YP_004596536.1| - 0.0035 17.7 0.6 0.0095 16.3 0.6 1.7 1 0 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|336253429|ref|YP_004596536.1| - 0.0081 16.1 0.0 0.019 14.9 0.0 1.6 1 0 0 1 1 1 1 RsgA GTPase AAA_24 PF13479.6 gi|336253429|ref|YP_004596536.1| - 0.0093 15.7 0.0 0.018 14.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|336253429|ref|YP_004596536.1| - 0.01 15.6 3.5 0.014 15.1 1.3 2.3 2 1 0 2 2 2 0 AAA domain AAA_21 PF13304.6 gi|336253429|ref|YP_004596536.1| - 0.011 15.6 0.0 0.044 13.6 0.0 1.7 1 1 0 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system AAA_18 PF13238.6 gi|336253429|ref|YP_004596536.1| - 0.011 16.3 0.0 0.12 12.9 0.0 2.4 2 1 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|336253429|ref|YP_004596536.1| - 0.017 14.9 0.0 0.042 13.6 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA PF00004.29 gi|336253429|ref|YP_004596536.1| - 0.053 13.9 0.0 0.65 10.4 0.0 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NTPase_1 PF03266.15 gi|336253429|ref|YP_004596536.1| - 0.065 13.2 0.1 3 7.7 0.0 2.3 1 1 0 2 2 2 0 NTPase AAA_33 PF13671.6 gi|336253429|ref|YP_004596536.1| - 0.13 12.4 0.0 0.48 10.6 0.0 1.9 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|336253429|ref|YP_004596536.1| - 0.15 12.6 0.0 0.3 11.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|336253429|ref|YP_004596536.1| - 0.15 12.2 0.0 0.74 9.9 0.0 2.1 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_28 PF13521.6 gi|336253429|ref|YP_004596536.1| - 0.25 11.6 2.2 16 5.7 0.3 2.5 1 1 0 2 2 2 0 AAA domain DEAD PF00270.29 gi|336253429|ref|YP_004596536.1| - 0.27 11.0 0.6 3.5 7.4 0.6 2.1 1 1 0 1 1 1 0 DEAD/DEAH box helicase Na_Ca_ex PF01699.24 gi|336253430|ref|YP_004596537.1| - 9.5e-23 80.8 40.1 1.6e-17 63.9 12.8 2.1 2 0 0 2 2 2 2 Sodium/calcium exchanger protein Git3 PF11710.8 gi|336253430|ref|YP_004596537.1| - 0.038 13.8 1.8 0.081 12.7 1.8 1.6 1 0 0 1 1 1 0 G protein-coupled glucose receptor regulating Gpa2 DUF4064 PF13273.6 gi|336253431|ref|YP_004596538.1| - 0.23 11.8 3.0 0.27 11.5 3.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4064) DUF308 PF03729.13 gi|336253431|ref|YP_004596538.1| - 0.24 11.7 7.7 0.81 10.1 7.8 1.7 1 1 0 1 1 1 0 Short repeat of unknown function (DUF308) DUF3311 PF11755.8 gi|336253431|ref|YP_004596538.1| - 0.96 9.4 7.4 1.2 9.1 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3311) NikR_C PF08753.11 gi|336253432|ref|YP_004596539.1| - 2.5e-20 72.4 0.6 3.7e-20 71.9 0.2 1.4 2 0 0 2 2 2 1 NikR C terminal nickel binding domain RHH_1 PF01402.21 gi|336253432|ref|YP_004596539.1| - 0.0026 17.6 0.1 0.0041 17.0 0.1 1.3 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family NikR_C PF08753.11 gi|336253433|ref|YP_004596540.1| - 1.9e-21 76.0 0.4 2.6e-21 75.6 0.4 1.2 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.21 gi|336253433|ref|YP_004596540.1| - 8.3e-07 28.7 0.1 1.5e-06 27.9 0.1 1.5 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family HicB_lk_antitox PF15919.5 gi|336253433|ref|YP_004596540.1| - 0.0024 18.0 0.0 0.004 17.3 0.0 1.4 1 0 0 1 1 1 1 HicB_like antitoxin of bacterial toxin-antitoxin system RHH_8 PF17723.1 gi|336253433|ref|YP_004596540.1| - 0.13 12.5 0.0 0.26 11.5 0.0 1.6 1 1 0 1 1 1 0 Ribbon-Helix-Helix transcriptional regulator family cobW PF02492.19 gi|336253434|ref|YP_004596541.1| - 5.5e-49 166.1 0.0 7e-49 165.8 0.0 1.1 1 0 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain CobW_C PF07683.14 gi|336253434|ref|YP_004596541.1| - 6.7e-25 86.8 0.1 1.6e-24 85.6 0.1 1.7 1 1 0 1 1 1 1 Cobalamin synthesis protein cobW C-terminal domain GTP_EFTU PF00009.27 gi|336253434|ref|YP_004596541.1| - 0.001 18.7 0.0 0.37 10.3 0.0 2.1 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain RsgA_GTPase PF03193.16 gi|336253434|ref|YP_004596541.1| - 0.0097 15.8 0.1 1.6 8.6 0.0 2.3 2 0 0 2 2 2 1 RsgA GTPase T2SSE PF00437.20 gi|336253434|ref|YP_004596541.1| - 0.015 14.4 0.1 0.024 13.7 0.1 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein Zeta_toxin PF06414.12 gi|336253434|ref|YP_004596541.1| - 0.016 14.5 0.0 0.026 13.8 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin TrwB_AAD_bind PF10412.9 gi|336253434|ref|YP_004596541.1| - 0.017 14.1 0.0 0.025 13.5 0.0 1.1 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_16 PF13191.6 gi|336253434|ref|YP_004596541.1| - 0.044 14.2 0.0 0.092 13.1 0.0 1.6 1 0 0 1 1 1 0 AAA ATPase domain AAA_28 PF13521.6 gi|336253434|ref|YP_004596541.1| - 0.067 13.4 0.0 0.21 11.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|336253434|ref|YP_004596541.1| - 0.11 12.2 0.0 0.19 11.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain TsaE PF02367.17 gi|336253434|ref|YP_004596541.1| - 0.14 12.1 0.0 0.27 11.2 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE ZnuA PF01297.17 gi|336253435|ref|YP_004596542.1| - 1.3e-53 182.1 0.0 1.5e-53 181.8 0.0 1.0 1 0 0 1 1 1 1 Zinc-uptake complex component A periplasmic ABC_tran PF00005.27 gi|336253437|ref|YP_004596544.1| - 4.4e-32 111.5 0.0 5.9e-32 111.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|336253437|ref|YP_004596544.1| - 9.3e-11 42.1 0.0 3.5e-06 27.1 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|336253437|ref|YP_004596544.1| - 0.00016 22.2 0.0 0.00025 21.6 0.0 1.2 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|336253437|ref|YP_004596544.1| - 0.00024 20.6 0.0 0.021 14.3 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|336253437|ref|YP_004596544.1| - 0.00074 19.3 0.0 0.0011 18.8 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|336253437|ref|YP_004596544.1| - 0.00082 19.1 0.0 0.0015 18.2 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain SbcCD_C PF13558.6 gi|336253437|ref|YP_004596544.1| - 0.0069 16.6 0.6 0.15 12.3 0.6 2.4 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_16 PF13191.6 gi|336253437|ref|YP_004596544.1| - 0.0081 16.6 0.2 0.018 15.4 0.2 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.6 gi|336253437|ref|YP_004596544.1| - 0.021 15.0 0.2 0.096 12.9 0.2 2.2 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|336253437|ref|YP_004596544.1| - 0.035 14.4 0.1 0.16 12.2 0.0 1.9 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.15 gi|336253437|ref|YP_004596544.1| - 0.062 13.2 0.0 0.16 11.9 0.0 1.6 2 0 0 2 2 2 0 NTPase cobW PF02492.19 gi|336253437|ref|YP_004596544.1| - 0.12 11.9 0.1 0.21 11.2 0.1 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Dynamin_N PF00350.23 gi|336253437|ref|YP_004596544.1| - 0.15 12.1 0.0 0.23 11.5 0.0 1.3 1 0 0 1 1 1 0 Dynamin family RsgA_GTPase PF03193.16 gi|336253437|ref|YP_004596544.1| - 0.19 11.6 0.0 0.39 10.6 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase ABC-3 PF00950.17 gi|336253438|ref|YP_004596545.1| - 2.6e-58 197.5 38.6 3.1e-58 197.3 38.6 1.0 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.18 gi|336253438|ref|YP_004596545.1| - 6.5e-06 25.4 38.0 6.5e-06 25.4 38.0 1.8 1 1 0 2 2 2 1 FecCD transport family Cpn60_TCP1 PF00118.24 gi|336253439|ref|YP_004596546.1| - 2.9e-167 557.2 12.9 3.3e-167 557.0 12.9 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Epimerase PF01370.21 gi|336253440|ref|YP_004596547.1| - 3.9e-51 173.9 0.0 4.5e-51 173.6 0.0 1.0 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|336253440|ref|YP_004596547.1| - 2.1e-41 142.4 0.0 1.1e-40 140.1 0.0 1.8 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase Polysacc_synt_2 PF02719.15 gi|336253440|ref|YP_004596547.1| - 5.4e-16 58.6 0.0 2.9e-15 56.2 0.0 1.9 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.6 gi|336253440|ref|YP_004596547.1| - 2.1e-15 57.1 0.3 3.9e-15 56.2 0.1 1.5 2 0 0 2 2 2 1 NAD(P)H-binding RmlD_sub_bind PF04321.17 gi|336253440|ref|YP_004596547.1| - 6.2e-14 51.8 0.0 7.2e-14 51.5 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.19 gi|336253440|ref|YP_004596547.1| - 9.8e-14 51.0 0.0 1.2e-13 50.8 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.12 gi|336253440|ref|YP_004596547.1| - 1.5e-10 40.7 0.1 3.8e-05 23.0 0.0 2.8 1 1 0 2 2 2 2 Male sterility protein adh_short PF00106.25 gi|336253440|ref|YP_004596547.1| - 5.8e-07 29.2 0.4 2.7e-05 23.7 0.4 2.6 1 1 0 1 1 1 1 short chain dehydrogenase NmrA PF05368.13 gi|336253440|ref|YP_004596547.1| - 5.9e-06 26.0 0.1 0.0002 21.0 0.1 2.0 2 0 0 2 2 2 1 NmrA-like family NAD_binding_7 PF13241.6 gi|336253440|ref|YP_004596547.1| - 0.0041 17.5 0.0 0.0087 16.5 0.0 1.5 1 0 0 1 1 1 1 Putative NAD(P)-binding Sacchrp_dh_NADP PF03435.18 gi|336253440|ref|YP_004596547.1| - 0.0048 17.1 0.2 0.011 16.0 0.2 1.6 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain DFP PF04127.15 gi|336253440|ref|YP_004596547.1| - 0.0053 16.6 0.1 0.01 15.7 0.1 1.5 1 0 0 1 1 1 1 DNA / pantothenate metabolism flavoprotein KR PF08659.10 gi|336253440|ref|YP_004596547.1| - 0.012 15.5 0.0 0.054 13.4 0.0 2.2 3 0 0 3 3 3 0 KR domain NAD_binding_2 PF03446.15 gi|336253440|ref|YP_004596547.1| - 0.018 15.2 0.0 0.095 12.9 0.0 2.1 2 1 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase TrkA_N PF02254.18 gi|336253440|ref|YP_004596547.1| - 0.028 14.7 0.1 0.056 13.7 0.1 1.6 1 0 0 1 1 1 0 TrkA-N domain 3HCDH_N PF02737.18 gi|336253440|ref|YP_004596547.1| - 0.039 13.8 0.1 0.065 13.1 0.1 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox PF00070.27 gi|336253440|ref|YP_004596547.1| - 0.051 14.1 0.1 0.12 12.9 0.1 1.8 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Shikimate_DH PF01488.20 gi|336253440|ref|YP_004596547.1| - 0.061 13.4 0.0 0.13 12.3 0.0 1.6 1 1 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase NAD_binding_3 PF03447.16 gi|336253440|ref|YP_004596547.1| - 0.061 14.0 0.2 0.34 11.6 0.1 2.0 2 0 0 2 2 2 0 Homoserine dehydrogenase, NAD binding domain Ldh_1_N PF00056.23 gi|336253440|ref|YP_004596547.1| - 0.078 13.1 0.1 0.12 12.5 0.1 1.3 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|336253440|ref|YP_004596547.1| - 0.14 11.7 0.1 0.32 10.6 0.0 1.6 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LPG_synthase_TM PF03706.13 gi|336253441|ref|YP_004596548.1| - 2.2e-36 125.9 44.5 2.2e-36 125.9 44.5 1.5 1 1 1 2 2 2 1 Lysylphosphatidylglycerol synthase TM region RGP PF03214.13 gi|336253442|ref|YP_004596549.1| - 7.9e-18 64.7 0.0 1e-17 64.3 0.0 1.2 1 0 0 1 1 1 1 Reversibly glycosylated polypeptide SBP_bac_6 PF13343.6 gi|336253443|ref|YP_004596550.1| - 5.4e-16 58.7 0.1 7.2e-16 58.3 0.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|336253443|ref|YP_004596550.1| - 2.2e-07 31.2 7.0 5.4e-07 29.9 7.0 1.6 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|336253443|ref|YP_004596550.1| - 2.4e-07 30.9 2.7 3.3e-07 30.4 2.7 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|336253443|ref|YP_004596550.1| - 2.4e-05 24.2 1.4 3.4e-05 23.7 1.4 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.22 gi|336253444|ref|YP_004596551.1| - 9.4e-28 97.2 53.4 5.6e-15 55.5 12.2 3.8 2 2 1 3 3 3 3 Binding-protein-dependent transport system inner membrane component PMT_2 PF13231.6 gi|336253445|ref|YP_004596552.1| - 1.1e-13 51.7 12.5 1.1e-13 51.7 12.5 3.3 3 0 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase PMT PF02366.18 gi|336253445|ref|YP_004596552.1| - 0.00075 19.2 6.0 0.00075 19.2 6.0 2.0 2 0 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Gluconate_2-dh3 PF13618.6 gi|336253446|ref|YP_004596553.1| - 3e-08 34.0 0.0 3.9e-08 33.6 0.0 1.2 1 0 0 1 1 1 1 Gluconate 2-dehydrogenase subunit 3 Pentapeptide PF00805.22 gi|336253447|ref|YP_004596554.1| - 1.1e-18 66.5 13.1 8.5e-09 34.9 0.3 3.6 1 1 1 3 3 3 3 Pentapeptide repeats (8 copies) Ion_trans_2 PF07885.16 gi|336253447|ref|YP_004596554.1| - 2.8e-14 52.8 0.2 2.8e-14 52.8 0.2 1.6 2 0 0 2 2 2 1 Ion channel Pentapeptide_4 PF13599.6 gi|336253447|ref|YP_004596554.1| - 1.5e-13 50.7 1.8 2.3e-08 34.0 0.2 2.4 1 1 1 2 2 2 2 Pentapeptide repeats (9 copies) Pentapeptide_3 PF13576.6 gi|336253447|ref|YP_004596554.1| - 4.4e-10 39.5 10.3 0.00095 19.3 0.7 3.3 1 1 1 2 2 2 2 Pentapeptide repeats (9 copies) Ion_trans PF00520.31 gi|336253447|ref|YP_004596554.1| - 0.076 12.2 0.0 0.094 11.9 0.0 1.2 1 0 0 1 1 1 0 Ion transport protein DoxX PF07681.12 gi|336253448|ref|YP_004596555.1| - 5.4e-05 23.7 7.4 5.4e-05 23.7 7.4 1.4 2 0 0 2 2 2 1 DoxX HR_lesion PF05514.11 gi|336253448|ref|YP_004596555.1| - 0.016 15.4 0.0 0.029 14.6 0.0 1.4 1 1 0 1 1 1 0 HR-like lesion-inducing DoxX_2 PF13564.6 gi|336253448|ref|YP_004596555.1| - 0.023 14.8 5.5 0.033 14.3 5.5 1.2 1 0 0 1 1 1 0 DoxX-like family FA_desaturase PF00487.24 gi|336253448|ref|YP_004596555.1| - 0.042 13.7 0.0 0.048 13.5 0.0 1.1 1 0 0 1 1 1 0 Fatty acid desaturase Glycos_transf_2 PF00535.26 gi|336253449|ref|YP_004596556.1| - 4.1e-20 72.3 0.0 5.2e-20 71.9 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|336253449|ref|YP_004596556.1| - 6.1e-05 23.0 0.1 7.5e-05 22.7 0.1 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 GMC_oxred_C PF05199.13 gi|336253450|ref|YP_004596557.1| - 2.3e-23 83.3 0.2 8.4e-23 81.5 0.2 2.0 1 1 0 1 1 1 1 GMC oxidoreductase GMC_oxred_N PF00732.19 gi|336253450|ref|YP_004596557.1| - 1.8e-14 53.9 0.0 2.9e-14 53.1 0.0 1.4 1 0 0 1 1 1 1 GMC oxidoreductase FAD_binding_2 PF00890.24 gi|336253450|ref|YP_004596557.1| - 6.4e-09 35.4 0.5 0.0018 17.5 0.2 2.2 2 0 0 2 2 2 2 FAD binding domain FAD_binding_3 PF01494.19 gi|336253450|ref|YP_004596557.1| - 2.8e-07 30.1 1.6 0.00053 19.3 0.1 2.1 2 0 0 2 2 2 2 FAD binding domain DAO PF01266.24 gi|336253450|ref|YP_004596557.1| - 1e-06 28.6 5.8 1.4e-05 24.9 3.8 3.0 3 1 0 3 3 3 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|336253450|ref|YP_004596557.1| - 6.7e-06 25.1 0.4 0.00072 18.4 0.2 2.1 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_2 PF07992.14 gi|336253450|ref|YP_004596557.1| - 3.4e-05 23.2 0.0 0.0012 18.1 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|336253450|ref|YP_004596557.1| - 0.0001 22.5 0.2 0.00047 20.3 0.2 2.2 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.12 gi|336253450|ref|YP_004596557.1| - 0.00025 20.2 0.3 0.00035 19.7 0.3 1.2 1 0 0 1 1 1 1 Lycopene cyclase protein ApbA PF02558.16 gi|336253450|ref|YP_004596557.1| - 0.0072 16.0 0.0 0.026 14.2 0.0 1.9 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA Fer4_7 PF12838.7 gi|336253450|ref|YP_004596557.1| - 0.026 15.1 2.3 0.065 13.8 2.3 1.7 1 0 0 1 1 1 0 4Fe-4S dicluster domain TrkA_N PF02254.18 gi|336253450|ref|YP_004596557.1| - 0.033 14.4 0.0 0.42 10.9 0.0 2.4 2 0 0 2 2 2 0 TrkA-N domain 3HCDH_N PF02737.18 gi|336253450|ref|YP_004596557.1| - 0.041 13.8 0.0 0.074 12.9 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|336253450|ref|YP_004596557.1| - 0.046 14.3 0.1 0.35 11.5 0.0 2.3 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent Pyr_redox PF00070.27 gi|336253450|ref|YP_004596557.1| - 0.051 14.1 0.1 0.71 10.5 0.1 2.6 3 0 0 3 3 2 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|336253450|ref|YP_004596557.1| - 0.058 12.7 0.0 0.12 11.6 0.0 1.4 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Fer4_10 PF13237.6 gi|336253450|ref|YP_004596557.1| - 0.06 13.5 0.1 0.12 12.5 0.1 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4 PF00037.27 gi|336253450|ref|YP_004596557.1| - 0.076 12.9 1.0 0.2 11.6 1.0 1.8 1 0 0 1 1 1 0 4Fe-4S binding domain Thi4 PF01946.17 gi|336253450|ref|YP_004596557.1| - 0.17 11.1 0.0 0.29 10.3 0.0 1.3 1 0 0 1 1 1 0 Thi4 family Shikimate_DH PF01488.20 gi|336253450|ref|YP_004596557.1| - 0.19 11.8 0.0 0.49 10.4 0.0 1.6 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Fer4_21 PF14697.6 gi|336253450|ref|YP_004596557.1| - 0.2 11.8 0.6 0.38 10.9 0.6 1.4 1 0 0 1 1 1 0 4Fe-4S dicluster domain UDPG_MGDP_dh_N PF03721.14 gi|336253450|ref|YP_004596557.1| - 0.23 11.0 0.1 0.42 10.2 0.1 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain SRAP PF02586.14 gi|336253451|ref|YP_004596558.1| - 1.8e-67 227.1 0.0 2e-67 226.9 0.0 1.0 1 0 0 1 1 1 1 SOS response associated peptidase (SRAP) PUA PF01472.20 gi|336253452|ref|YP_004596559.1| - 1.2e-16 60.4 1.3 1.9e-16 59.8 1.3 1.3 1 0 0 1 1 1 1 PUA domain UPF0113 PF03657.13 gi|336253452|ref|YP_004596559.1| - 0.016 15.4 0.0 0.024 14.9 0.0 1.2 1 0 0 1 1 1 0 UPF0113 PUA domain Inhibitor_I24 PF10465.9 gi|336253452|ref|YP_004596559.1| - 0.086 12.8 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 PinA peptidase inhibitor ADD_ATRX PF17981.1 gi|336253453|ref|YP_004596560.1| - 0.016 15.1 0.3 0.67 9.9 0.1 2.1 2 0 0 2 2 2 0 Cysteine Rich ADD domain Tnp_zf-ribbon_2 PF13842.6 gi|336253453|ref|YP_004596560.1| - 0.041 14.7 4.1 2.4 9.0 0.6 2.2 2 0 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon DUF1930 PF09122.10 gi|336253453|ref|YP_004596560.1| - 0.053 13.5 0.0 0.084 12.9 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1930) DUF3268 PF11672.8 gi|336253453|ref|YP_004596560.1| - 0.091 13.1 0.4 0.12 12.7 0.4 1.2 1 0 0 1 1 1 0 zinc-finger-containing domain Zn-ribbon_8 PF09723.10 gi|336253453|ref|YP_004596560.1| - 0.17 12.0 3.8 10 6.3 0.1 2.3 2 0 0 2 2 2 0 Zinc ribbon domain ABC2_membrane_2 PF12679.7 gi|336253454|ref|YP_004596561.1| - 5.7e-38 130.8 13.5 8e-37 127.1 13.5 1.9 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|336253454|ref|YP_004596561.1| - 1.9e-09 37.1 4.2 2.6e-09 36.6 4.2 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|336253454|ref|YP_004596561.1| - 9.9e-07 28.4 5.0 1.4e-06 27.9 5.0 1.2 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_5 PF13346.6 gi|336253454|ref|YP_004596561.1| - 2.1e-06 27.4 1.6 2.1e-06 27.4 1.6 1.6 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|336253454|ref|YP_004596561.1| - 0.00035 20.6 4.1 0.00051 20.0 4.1 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein Kinocilin PF15033.6 gi|336253454|ref|YP_004596561.1| - 0.13 11.9 5.5 0.26 10.9 5.5 1.5 1 0 0 1 1 1 0 Kinocilin protein DUF1129 PF06570.11 gi|336253454|ref|YP_004596561.1| - 0.92 9.0 6.0 2.6 7.5 3.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1129) MTABC_N PF16185.5 gi|336253454|ref|YP_004596561.1| - 1.8 8.0 9.3 2.1 7.8 6.8 2.1 1 1 1 2 2 2 0 Mitochondrial ABC-transporter N-terminal five TM region ABC_tran PF00005.27 gi|336253455|ref|YP_004596562.1| - 1.9e-28 99.7 0.0 6.7e-28 97.9 0.0 1.8 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|336253455|ref|YP_004596562.1| - 1.4e-12 48.0 0.1 2.8e-08 34.0 0.0 2.4 2 1 1 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|336253455|ref|YP_004596562.1| - 2.9e-06 27.9 0.0 1.1e-05 26.0 0.0 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF4162) AAA_30 PF13604.6 gi|336253455|ref|YP_004596562.1| - 0.0011 18.7 0.2 0.0044 16.8 0.0 1.9 1 1 1 2 2 2 1 AAA domain SMC_N PF02463.19 gi|336253455|ref|YP_004596562.1| - 0.0084 15.6 0.0 3.6 7.0 0.0 2.3 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|336253455|ref|YP_004596562.1| - 0.016 15.7 0.0 0.025 15.1 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|336253455|ref|YP_004596562.1| - 0.024 14.3 0.0 0.047 13.4 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|336253455|ref|YP_004596562.1| - 0.031 14.2 0.0 0.05 13.5 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_16 PF13191.6 gi|336253455|ref|YP_004596562.1| - 0.08 13.3 0.4 0.17 12.3 0.4 1.8 1 1 0 1 1 1 0 AAA ATPase domain IstB_IS21 PF01695.17 gi|336253455|ref|YP_004596562.1| - 0.13 12.0 0.0 12 5.6 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein RNB PF00773.19 gi|336253456|ref|YP_004596563.1| - 9e-83 278.3 0.0 1.7e-81 274.1 0.0 2.1 1 1 0 1 1 1 1 RNB domain Acetyltransf_1 PF00583.25 gi|336253457|ref|YP_004596564.1| - 5.1e-11 42.8 0.0 6.6e-11 42.5 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|336253457|ref|YP_004596564.1| - 1.3e-08 34.8 0.0 1.9e-08 34.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|336253457|ref|YP_004596564.1| - 2.3e-06 27.9 0.0 3e-06 27.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|336253457|ref|YP_004596564.1| - 0.027 14.5 0.0 0.043 13.8 0.0 1.3 1 0 0 1 1 1 0 FR47-like protein Acetyltransf_1 PF00583.25 gi|336253458|ref|YP_004596565.1| - 7.9e-13 48.7 0.0 9.4e-13 48.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|336253458|ref|YP_004596565.1| - 4.5e-06 26.6 0.0 6.3e-06 26.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|336253458|ref|YP_004596565.1| - 5.9e-05 23.4 0.0 9.3e-05 22.8 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|336253458|ref|YP_004596565.1| - 0.0025 18.5 0.0 0.0031 18.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|336253458|ref|YP_004596565.1| - 0.012 15.6 0.0 0.028 14.4 0.0 1.6 2 0 0 2 2 2 0 FR47-like protein NAT PF04768.13 gi|336253458|ref|YP_004596565.1| - 0.058 13.1 0.0 0.13 11.9 0.0 1.4 1 1 0 1 1 1 0 NAT, N-acetyltransferase, of N-acetylglutamate synthase Pyr_redox_2 PF07992.14 gi|336253459|ref|YP_004596566.1| - 1.3e-34 119.8 0.1 1.8e-34 119.3 0.1 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|336253459|ref|YP_004596566.1| - 1.1e-08 35.5 0.9 2.1e-07 31.4 0.0 2.7 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|336253459|ref|YP_004596566.1| - 8.5e-08 32.4 0.0 4.1e-07 30.2 0.0 1.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NAD_binding_9 PF13454.6 gi|336253459|ref|YP_004596566.1| - 0.00017 21.6 3.1 0.069 13.1 0.1 2.7 3 0 0 3 3 3 2 FAD-NAD(P)-binding GIDA PF01134.22 gi|336253459|ref|YP_004596566.1| - 0.11 11.5 0.0 1.7 7.6 0.0 2.1 2 0 0 2 2 2 0 Glucose inhibited division protein A Peptidase_M43 PF05572.13 gi|336253460|ref|YP_004596567.1| - 0.33 10.9 3.2 0.41 10.5 1.8 2.0 2 0 0 2 2 2 0 Pregnancy-associated plasma protein-A PfkB PF00294.24 gi|336253461|ref|YP_004596568.1| - 5.9e-50 170.3 0.0 7.2e-50 170.0 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase RTC PF01137.21 gi|336253462|ref|YP_004596569.1| - 1.1e-64 217.6 0.0 1.4e-64 217.3 0.0 1.1 1 0 0 1 1 1 1 RNA 3'-terminal phosphate cyclase RTC_insert PF05189.13 gi|336253462|ref|YP_004596569.1| - 2.3e-10 40.9 0.3 3.4e-09 37.2 0.3 2.3 2 0 0 2 2 2 1 RNA 3'-terminal phosphate cyclase (RTC), insert domain SRP_TPR_like PF17004.5 gi|336253463|ref|YP_004596570.1| - 0.042 13.9 0.0 0.095 12.7 0.0 1.6 1 0 0 1 1 1 0 Putative TPR-like repeat CBM_17_28 PF03424.14 gi|336253463|ref|YP_004596570.1| - 0.13 11.9 0.0 0.2 11.3 0.0 1.3 1 0 0 1 1 1 0 Carbohydrate binding domain (family 17/28) tRNA-synt_1 PF00133.22 gi|336253464|ref|YP_004596571.1| - 2.3e-124 415.9 0.1 4.7e-123 411.5 0.1 2.0 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|336253464|ref|YP_004596571.1| - 8e-35 120.0 0.9 1.2e-34 119.5 0.2 1.7 2 0 0 2 2 2 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|336253464|ref|YP_004596571.1| - 7.6e-21 74.3 0.5 1.1e-09 37.5 0.0 3.4 3 0 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.6 gi|336253464|ref|YP_004596571.1| - 7e-07 28.9 0.0 1.6e-06 27.7 0.0 1.5 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.19 gi|336253464|ref|YP_004596571.1| - 4.6e-05 22.9 0.0 0.004 16.5 0.0 2.4 2 0 0 2 2 2 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|336253464|ref|YP_004596571.1| - 0.00076 18.5 0.0 0.0025 16.8 0.0 1.9 2 0 0 2 2 2 1 tRNA synthetases class I (K) Zn-ribbon_8 PF09723.10 gi|336253464|ref|YP_004596571.1| - 0.0034 17.5 3.1 0.044 13.9 0.8 2.7 2 0 0 2 2 2 1 Zinc ribbon domain SpecificRecomb PF10136.9 gi|336253464|ref|YP_004596571.1| - 0.096 11.0 0.0 0.15 10.3 0.0 1.2 1 0 0 1 1 1 0 Site-specific recombinase UPF0547 PF10571.9 gi|336253464|ref|YP_004596571.1| - 7.6 6.7 8.3 2 8.6 0.4 3.0 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 HalOD1 PF18545.1 gi|336253465|ref|YP_004596572.1| - 8.5e-17 61.2 0.0 9.7e-17 61.0 0.0 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 RVT_3 PF13456.6 gi|336253466|ref|YP_004596573.1| - 5.8e-10 39.0 0.0 7.9e-10 38.6 0.0 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like RNase_H PF00075.24 gi|336253466|ref|YP_004596573.1| - 1e-08 35.5 0.0 1.8e-08 34.7 0.0 1.3 1 0 0 1 1 1 1 RNase H PAS_4 PF08448.10 gi|336253467|ref|YP_004596574.1| - 4.3e-31 107.4 7.3 3.6e-14 52.9 0.3 3.9 3 1 0 3 3 3 3 PAS fold HATPase_c PF02518.26 gi|336253467|ref|YP_004596574.1| - 9.8e-29 100.1 0.0 4.8e-28 97.9 0.0 2.1 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|336253467|ref|YP_004596574.1| - 3.8e-18 65.6 0.0 2.2e-06 27.8 0.0 4.2 4 0 0 4 4 4 3 PAS domain PAS PF00989.25 gi|336253467|ref|YP_004596574.1| - 2.8e-13 49.9 1.6 8.7e-05 22.5 0.0 5.4 5 1 0 5 5 5 2 PAS fold PAS_3 PF08447.12 gi|336253467|ref|YP_004596574.1| - 8.4e-11 42.0 1.5 0.00021 21.5 0.0 5.4 6 0 0 6 6 6 2 PAS fold PAS_8 PF13188.7 gi|336253467|ref|YP_004596574.1| - 1e-10 41.4 0.5 0.00012 22.0 0.0 4.2 3 1 0 3 3 3 2 PAS domain HisKA PF00512.25 gi|336253467|ref|YP_004596574.1| - 3.5e-10 39.8 1.4 8.5e-10 38.5 0.1 2.4 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_2 PF13581.6 gi|336253467|ref|YP_004596574.1| - 0.0037 17.2 1.8 0.0044 17.0 0.1 2.1 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain PAS_7 PF12860.7 gi|336253467|ref|YP_004596574.1| - 0.0046 17.1 0.1 19 5.4 0.0 4.5 4 2 0 4 4 4 0 PAS fold HATPase_c_5 PF14501.6 gi|336253467|ref|YP_004596574.1| - 0.029 14.3 0.0 0.07 13.0 0.0 1.6 1 0 0 1 1 1 0 GHKL domain HTH_11 PF08279.12 gi|336253467|ref|YP_004596574.1| - 0.038 13.9 0.0 0.12 12.3 0.0 1.8 1 0 0 1 1 1 0 HTH domain Phage_GP20 PF06810.11 gi|336253467|ref|YP_004596574.1| - 0.2 11.5 1.3 11 5.9 0.2 2.6 2 1 0 2 2 2 0 Phage minor structural protein GP20 DUF1405 PF07187.11 gi|336253468|ref|YP_004596575.1| - 2.9e-49 167.1 16.7 4e-49 166.6 16.7 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1405) ADC PF06314.11 gi|336253469|ref|YP_004596576.1| - 1.5e-15 57.4 0.1 2.6e-15 56.6 0.1 1.3 1 0 0 1 1 1 1 Acetoacetate decarboxylase (ADC) SOR_SNZ PF01680.17 gi|336253470|ref|YP_004596577.1| - 3.6e-102 340.5 9.2 4.4e-102 340.2 9.2 1.1 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.14 gi|336253470|ref|YP_004596577.1| - 1.6e-10 40.7 6.6 3.8e-07 29.7 1.0 2.2 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG Dus PF01207.17 gi|336253470|ref|YP_004596577.1| - 4.6e-05 22.7 1.3 0.015 14.4 0.1 2.4 2 1 0 2 2 2 2 Dihydrouridine synthase (Dus) OMPdecase PF00215.24 gi|336253470|ref|YP_004596577.1| - 0.00083 19.0 0.2 0.79 9.3 0.0 2.4 1 1 1 2 2 2 2 Orotidine 5'-phosphate decarboxylase / HUMPS family IGPS PF00218.21 gi|336253470|ref|YP_004596577.1| - 0.0055 15.9 0.1 0.15 11.2 0.0 2.4 2 1 0 2 2 2 1 Indole-3-glycerol phosphate synthase NanE PF04131.14 gi|336253470|ref|YP_004596577.1| - 0.014 14.5 1.6 0.36 10.0 0.1 2.8 2 1 1 3 3 3 0 Putative N-acetylmannosamine-6-phosphate epimerase FMN_dh PF01070.18 gi|336253470|ref|YP_004596577.1| - 0.015 14.3 0.6 0.13 11.2 0.0 2.2 2 1 0 2 2 2 0 FMN-dependent dehydrogenase His_biosynth PF00977.21 gi|336253470|ref|YP_004596577.1| - 0.055 12.9 0.4 0.59 9.6 0.0 2.6 2 1 0 2 2 2 0 Histidine biosynthesis protein TMP-TENI PF02581.17 gi|336253470|ref|YP_004596577.1| - 0.064 12.6 1.2 0.36 10.1 0.1 2.2 2 0 0 2 2 2 0 Thiamine monophosphate synthase MttA_Hcf106 PF02416.16 gi|336253470|ref|YP_004596577.1| - 0.17 11.3 2.5 1.4 8.3 0.1 2.7 3 0 0 3 3 3 0 mttA/Hcf106 family zf-C2HC5 PF06221.13 gi|336253471|ref|YP_004596578.1| - 0.00027 20.8 0.5 0.00027 20.8 0.5 1.1 1 0 0 1 1 1 1 Putative zinc finger motif, C2HC5-type DZR PF12773.7 gi|336253471|ref|YP_004596578.1| - 0.00028 20.8 0.9 0.00033 20.6 0.9 1.1 1 0 0 1 1 1 1 Double zinc ribbon zf_UBZ PF18439.1 gi|336253471|ref|YP_004596578.1| - 0.00034 20.1 0.7 0.086 12.4 0.1 2.1 2 0 0 2 2 2 2 Ubiquitin-Binding Zinc Finger zinc_ribbon_2 PF13240.6 gi|336253471|ref|YP_004596578.1| - 0.00066 19.3 1.7 0.025 14.3 0.4 2.1 2 0 0 2 2 2 1 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|336253471|ref|YP_004596578.1| - 0.00093 18.5 1.6 0.24 10.9 0.4 2.1 2 0 0 2 2 2 2 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|336253471|ref|YP_004596578.1| - 0.0045 17.1 2.5 0.0085 16.2 2.5 1.5 1 1 0 1 1 1 1 Zinc ribbon domain DUF1272 PF06906.11 gi|336253471|ref|YP_004596578.1| - 0.0088 16.1 0.8 0.01 15.9 0.8 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1272) YhfH PF14149.6 gi|336253471|ref|YP_004596578.1| - 0.014 15.3 1.8 0.88 9.6 0.2 2.1 1 1 1 2 2 2 0 YhfH-like protein Rubredoxin_2 PF18073.1 gi|336253471|ref|YP_004596578.1| - 0.016 15.0 2.0 0.036 13.8 2.0 1.6 1 1 0 1 1 1 0 Rubredoxin metal binding domain zinc-ribbons_6 PF07191.12 gi|336253471|ref|YP_004596578.1| - 0.017 15.1 0.3 0.021 14.8 0.3 1.1 1 0 0 1 1 1 0 zinc-ribbons HypA PF01155.19 gi|336253471|ref|YP_004596578.1| - 0.03 14.3 0.8 0.032 14.2 0.8 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_9 PF14369.6 gi|336253471|ref|YP_004596578.1| - 0.052 13.8 1.4 0.11 12.7 1.3 1.6 1 1 1 2 2 2 0 zinc-ribbon MCM_OB PF17207.3 gi|336253471|ref|YP_004596578.1| - 0.06 13.2 0.2 0.06 13.2 0.2 1.0 1 0 0 1 1 1 0 MCM OB domain OrfB_Zn_ribbon PF07282.11 gi|336253471|ref|YP_004596578.1| - 0.11 12.5 0.9 0.13 12.2 0.9 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-CCHC_5 PF14787.6 gi|336253471|ref|YP_004596578.1| - 0.13 12.0 4.1 5.1 6.9 0.2 2.2 2 0 0 2 2 2 0 GAG-polyprotein viral zinc-finger Zn_ribbon_SprT PF17283.2 gi|336253471|ref|YP_004596578.1| - 0.29 11.1 2.7 1.7 8.6 2.7 1.9 1 1 0 1 1 1 0 SprT-like zinc ribbon domain zf-Mss51 PF13824.6 gi|336253471|ref|YP_004596578.1| - 0.74 10.0 3.7 3.7 7.7 0.1 2.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-C2H2_11 PF16622.5 gi|336253471|ref|YP_004596578.1| - 1.1 9.0 3.5 1.3 8.8 0.4 2.1 1 1 1 2 2 2 0 zinc-finger C2H2-type ELFV_dehydrog PF00208.21 gi|336253472|ref|YP_004596579.1| - 3.6e-72 243.0 0.1 5.1e-72 242.5 0.1 1.2 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 gi|336253472|ref|YP_004596579.1| - 2.9e-56 188.9 0.0 4.8e-56 188.2 0.0 1.4 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.19 gi|336253472|ref|YP_004596579.1| - 0.0008 18.8 0.0 0.0014 18.0 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Bac_GDH PF05088.12 gi|336253472|ref|YP_004596579.1| - 0.025 12.1 0.1 0.083 10.4 0.0 1.7 2 0 0 2 2 2 0 Bacterial NAD-glutamate dehydrogenase Gp_dh_N PF00044.24 gi|336253472|ref|YP_004596579.1| - 0.1 12.9 0.0 0.7 10.3 0.0 2.3 2 0 0 2 2 2 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ATP-synt_I PF03899.15 gi|336253473|ref|YP_004596580.1| - 0.032 14.6 2.6 0.032 14.6 2.6 2.0 2 0 0 2 2 2 0 ATP synthase I chain DUF2070 PF09843.9 gi|336253473|ref|YP_004596580.1| - 0.081 11.2 2.5 0.092 11.0 2.5 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) VirB3 PF05101.13 gi|336253473|ref|YP_004596580.1| - 0.9 9.8 0.0 0.9 9.8 0.0 2.5 1 1 1 2 2 2 0 Type IV secretory pathway, VirB3-like protein GHMP_kinases_N PF00288.26 gi|336253474|ref|YP_004596581.1| - 4e-15 55.8 3.8 7.4e-15 54.9 1.6 2.4 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|336253474|ref|YP_004596581.1| - 1.3e-07 31.9 0.0 2.9e-07 30.7 0.0 1.6 1 0 0 1 1 1 1 GHMP kinases C terminal MFS_1 PF07690.16 gi|336253475|ref|YP_004596582.1| - 2.3e-30 105.7 64.3 1.1e-29 103.5 37.9 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily LHC PF00556.20 gi|336253475|ref|YP_004596582.1| - 0.074 13.3 0.7 0.074 13.3 0.7 3.4 4 0 0 4 4 4 0 Antenna complex alpha/beta subunit Pyr_redox_2 PF07992.14 gi|336253477|ref|YP_004596584.1| - 1.7e-47 162.1 0.3 2.2e-47 161.7 0.3 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|336253477|ref|YP_004596584.1| - 5.2e-13 48.9 0.0 6.3e-10 38.8 0.0 2.2 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|336253477|ref|YP_004596584.1| - 2.3e-11 44.1 0.3 1.5e-05 25.4 0.0 3.4 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Rubredoxin_C PF18267.1 gi|336253477|ref|YP_004596584.1| - 4.3e-09 36.2 0.0 1.4e-07 31.3 0.0 2.6 2 0 0 2 2 2 1 Rubredoxin NAD+ reductase C-terminal domain NAD_binding_8 PF13450.6 gi|336253477|ref|YP_004596584.1| - 0.00069 19.8 0.2 0.22 11.8 0.0 3.3 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|336253477|ref|YP_004596584.1| - 0.00089 18.1 0.1 0.06 12.0 0.0 3.0 3 1 1 4 4 4 1 HI0933-like protein Thi4 PF01946.17 gi|336253477|ref|YP_004596584.1| - 0.0087 15.3 0.1 0.099 11.9 0.0 2.3 2 0 0 2 2 2 1 Thi4 family K_oxygenase PF13434.6 gi|336253477|ref|YP_004596584.1| - 0.058 12.5 0.0 0.97 8.5 0.0 2.1 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) Reductase_C PF14759.6 gi|336253477|ref|YP_004596584.1| - 0.12 13.0 0.0 0.39 11.3 0.0 1.9 1 0 0 1 1 1 0 Reductase C-terminal DAO PF01266.24 gi|336253477|ref|YP_004596584.1| - 0.22 11.0 4.9 1.7 8.1 0.0 3.1 4 0 0 4 4 4 0 FAD dependent oxidoreductase NAD_binding_9 PF13454.6 gi|336253477|ref|YP_004596584.1| - 0.34 10.9 4.0 3.7 7.5 0.0 2.8 3 0 0 3 3 3 0 FAD-NAD(P)-binding NrfD PF03916.14 gi|336253478|ref|YP_004596585.1| - 1.9e-20 73.8 21.2 1.9e-20 73.8 21.2 1.8 2 0 0 2 2 2 1 Polysulphide reductase, NrfD DUF996 PF06195.13 gi|336253478|ref|YP_004596585.1| - 0.18 12.1 0.2 0.18 12.1 0.2 3.9 2 2 3 5 5 5 0 Protein of unknown function (DUF996) DUF2583 PF10762.9 gi|336253478|ref|YP_004596585.1| - 3.1 8.3 7.2 1.7 9.1 3.8 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2583) RHH_1 PF01402.21 gi|336253479|ref|YP_004596586.1| - 0.015 15.2 0.3 0.028 14.4 0.3 1.4 1 1 0 1 1 1 0 Ribbon-helix-helix protein, copG family Vac_Fusion PF02346.16 gi|336253479|ref|YP_004596586.1| - 0.18 11.4 0.1 0.34 10.6 0.0 1.5 2 0 0 2 2 2 0 Chordopoxvirus multifunctional envelope protein A27 YihI PF04220.12 gi|336253480|ref|YP_004596587.1| - 0.013 15.2 0.0 0.015 15.1 0.0 1.1 1 0 0 1 1 1 0 Der GTPase activator (YihI) CheD PF03975.13 gi|336253481|ref|YP_004596588.1| - 1.5e-28 99.0 0.0 2.1e-28 98.6 0.0 1.2 1 0 0 1 1 1 1 CheD chemotactic sensory transduction Aminotran_5 PF00266.19 gi|336253482|ref|YP_004596589.1| - 8.1e-54 183.0 0.0 1.4e-53 182.2 0.0 1.4 1 1 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|336253482|ref|YP_004596589.1| - 0.2 10.2 0.0 0.28 9.7 0.0 1.2 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme Lar_restr_allev PF14354.6 gi|336253483|ref|YP_004596590.1| - 0.02 15.2 0.3 0.024 15.0 0.3 1.1 1 0 0 1 1 1 0 Restriction alleviation protein Lar TMF_TATA_bd PF12325.8 gi|336253484|ref|YP_004596591.1| - 0.002 18.3 3.3 0.002 18.3 3.3 2.2 2 0 0 2 2 2 1 TATA element modulatory factor 1 TATA binding Med10 PF09748.9 gi|336253484|ref|YP_004596591.1| - 0.0074 16.2 0.1 0.077 13.0 0.0 2.1 2 0 0 2 2 2 1 Transcription factor subunit Med10 of Mediator complex Spc7 PF08317.11 gi|336253484|ref|YP_004596591.1| - 0.046 12.6 5.9 0.072 12.0 5.7 1.4 1 1 1 2 2 2 0 Spc7 kinetochore protein DUF948 PF06103.11 gi|336253484|ref|YP_004596591.1| - 0.059 13.6 1.8 0.34 11.2 0.0 2.3 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) HlyD_2 PF12700.7 gi|336253484|ref|YP_004596591.1| - 0.092 11.5 0.2 0.2 10.4 0.0 1.5 2 0 0 2 2 2 0 HlyD family secretion protein CLZ PF16526.5 gi|336253484|ref|YP_004596591.1| - 0.67 10.3 5.2 4.4 7.7 0.1 2.6 2 1 0 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Mobilization_B PF17511.2 gi|336253484|ref|YP_004596591.1| - 1.6 9.1 5.8 3 8.2 1.6 2.2 1 1 1 2 2 2 0 Mobilization protein B ARGLU PF15346.6 gi|336253484|ref|YP_004596591.1| - 2.2 8.1 10.0 7.8 6.4 3.5 2.3 1 1 1 2 2 2 0 Arginine and glutamate-rich 1 DUF3073 PF11273.8 gi|336253484|ref|YP_004596591.1| - 2.9 8.7 5.4 1.3 9.8 2.2 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3073) DUF2203 PF09969.9 gi|336253484|ref|YP_004596591.1| - 3.2 8.5 5.7 11 6.8 5.7 1.9 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) Osmo_CC PF08946.10 gi|336253484|ref|YP_004596591.1| - 4.8 7.5 8.2 9 6.6 0.9 2.6 2 1 0 2 2 2 0 Osmosensory transporter coiled coil DUF3391 PF11871.8 gi|336253484|ref|YP_004596591.1| - 6.3 7.3 10.7 0.53 10.8 5.2 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF3391) Histone_HNS PF00816.21 gi|336253484|ref|YP_004596591.1| - 7.9 7.4 7.6 2e+02 2.9 7.3 2.3 1 1 0 1 1 1 0 H-NS histone family UvrA_inter PF17760.1 gi|336253485|ref|YP_004596592.1| - 1.4e-32 112.0 0.9 5.6e-32 110.1 0.0 2.5 3 0 0 3 3 2 1 UvrA interaction domain UvrA_DNA-bind PF17755.1 gi|336253485|ref|YP_004596592.1| - 2.1e-30 105.3 0.6 5.4e-28 97.5 0.1 3.6 4 0 0 4 4 4 1 UvrA DNA-binding domain ABC_tran PF00005.27 gi|336253485|ref|YP_004596592.1| - 5.5e-22 78.7 0.0 1.2e-11 45.3 0.0 4.2 3 2 0 3 3 3 3 ABC transporter SMC_N PF02463.19 gi|336253485|ref|YP_004596592.1| - 1.1e-12 47.9 0.1 0.0094 15.4 0.1 4.1 3 1 0 3 3 3 3 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|336253485|ref|YP_004596592.1| - 1e-08 34.8 0.0 0.0024 17.5 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|336253485|ref|YP_004596592.1| - 1.4e-07 32.0 0.1 0.025 15.0 0.0 3.2 3 1 0 3 3 2 2 AAA ATPase domain AAA_22 PF13401.6 gi|336253485|ref|YP_004596592.1| - 5.6e-06 26.7 0.1 0.12 12.7 0.0 3.3 3 0 0 3 3 2 2 AAA domain AAA_21 PF13304.6 gi|336253485|ref|YP_004596592.1| - 4.8e-05 23.3 8.0 0.29 10.9 0.0 4.4 4 0 0 4 4 4 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|336253485|ref|YP_004596592.1| - 7.5e-05 22.6 0.1 0.39 10.4 0.0 4.1 4 1 0 4 4 4 1 AAA ATPase domain AAA_14 PF13173.6 gi|336253485|ref|YP_004596592.1| - 0.00016 21.7 0.1 0.19 11.7 0.0 3.5 4 0 0 4 4 3 1 AAA domain ATPase PF06745.13 gi|336253485|ref|YP_004596592.1| - 0.00018 20.9 0.1 0.11 11.8 0.0 2.8 3 0 0 3 3 3 1 KaiC RsgA_GTPase PF03193.16 gi|336253485|ref|YP_004596592.1| - 0.00018 21.4 0.0 0.53 10.2 0.0 2.4 2 0 0 2 2 2 2 RsgA GTPase DnaJ_CXXCXGXG PF00684.19 gi|336253485|ref|YP_004596592.1| - 0.00024 21.4 9.9 0.013 15.8 0.8 3.8 4 0 0 4 4 3 1 DnaJ central domain AAA_18 PF13238.6 gi|336253485|ref|YP_004596592.1| - 0.00025 21.6 0.4 0.79 10.3 0.0 3.6 3 0 0 3 3 3 1 AAA domain cobW PF02492.19 gi|336253485|ref|YP_004596592.1| - 0.00027 20.6 0.1 0.046 13.3 0.0 2.4 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_25 PF13481.6 gi|336253485|ref|YP_004596592.1| - 0.00087 18.9 0.0 1.4 8.4 0.0 3.2 2 0 0 2 2 2 2 AAA domain AAA_23 PF13476.6 gi|336253485|ref|YP_004596592.1| - 0.00092 19.8 0.1 0.53 10.8 0.0 2.9 3 0 0 3 3 2 1 AAA domain APS_kinase PF01583.20 gi|336253485|ref|YP_004596592.1| - 0.001 19.0 0.1 1.1 9.2 0.0 2.7 2 0 0 2 2 2 1 Adenylylsulphate kinase AAA_33 PF13671.6 gi|336253485|ref|YP_004596592.1| - 0.0013 18.9 0.1 1.5 9.0 0.0 3.4 4 1 0 4 4 3 1 AAA domain Viral_helicase1 PF01443.18 gi|336253485|ref|YP_004596592.1| - 0.008 15.9 0.0 0.45 10.2 0.0 2.4 2 0 0 2 2 2 1 Viral (Superfamily 1) RNA helicase NACHT PF05729.12 gi|336253485|ref|YP_004596592.1| - 0.014 15.3 0.0 0.79 9.6 0.0 2.4 2 0 0 2 2 2 0 NACHT domain DUF2075 PF09848.9 gi|336253485|ref|YP_004596592.1| - 0.022 14.0 0.1 5.8 6.1 0.0 2.4 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) ATPase_2 PF01637.18 gi|336253485|ref|YP_004596592.1| - 0.026 14.4 0.0 8.1 6.3 0.0 2.5 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea Zn_Tnp_IS91 PF14319.6 gi|336253485|ref|YP_004596592.1| - 0.033 14.2 1.9 1.9 8.6 0.0 3.2 3 0 0 3 3 3 0 Transposase zinc-binding domain NB-ARC PF00931.22 gi|336253485|ref|YP_004596592.1| - 0.046 12.9 0.0 0.81 8.8 0.0 2.5 2 0 0 2 2 2 0 NB-ARC domain AAA_30 PF13604.6 gi|336253485|ref|YP_004596592.1| - 0.061 13.0 0.4 3.3 7.4 0.0 2.9 4 0 0 4 4 2 0 AAA domain Zn-ribbon_8 PF09723.10 gi|336253485|ref|YP_004596592.1| - 0.082 13.0 15.0 5.6 7.2 1.1 4.6 4 0 0 4 4 4 0 Zinc ribbon domain AAA_24 PF13479.6 gi|336253485|ref|YP_004596592.1| - 0.095 12.4 1.3 4 7.1 0.0 3.2 4 0 0 4 4 3 0 AAA domain RNA_helicase PF00910.22 gi|336253485|ref|YP_004596592.1| - 0.1 13.0 0.1 3.7 8.0 0.0 2.3 2 0 0 2 2 2 0 RNA helicase NMDAR2_C PF10565.9 gi|336253485|ref|YP_004596592.1| - 0.17 10.7 0.0 0.27 10.1 0.0 1.2 1 0 0 1 1 1 0 N-methyl D-aspartate receptor 2B3 C-terminus DUF3987 PF13148.6 gi|336253485|ref|YP_004596592.1| - 0.18 10.8 0.1 5.9 5.8 0.0 3.0 4 0 0 4 4 4 0 Protein of unknown function (DUF3987) NTPase_1 PF03266.15 gi|336253485|ref|YP_004596592.1| - 0.21 11.5 0.6 1.6 8.6 0.0 2.5 2 0 0 2 2 2 0 NTPase DZR PF12773.7 gi|336253485|ref|YP_004596592.1| - 0.53 10.3 8.3 4.8 7.3 0.4 3.9 4 0 0 4 4 4 0 Double zinc ribbon Anti-TRAP PF15777.5 gi|336253485|ref|YP_004596592.1| - 0.79 9.7 9.8 10 6.2 0.0 4.2 4 0 0 4 4 4 0 Tryptophan RNA-binding attenuator protein inhibitory protein DUF87 PF01935.17 gi|336253485|ref|YP_004596592.1| - 1 9.4 0.0 1 9.4 0.0 3.0 4 0 0 4 4 3 0 Helicase HerA, central domain Methyltransf_11 PF08241.12 gi|336253486|ref|YP_004596593.1| - 1.4e-23 83.4 0.1 2.4e-23 82.6 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|336253486|ref|YP_004596593.1| - 1.3e-21 77.1 0.1 2.4e-21 76.2 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|336253486|ref|YP_004596593.1| - 1.3e-21 76.9 0.0 1.7e-21 76.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|336253486|ref|YP_004596593.1| - 1.1e-17 64.4 0.0 1.4e-17 64.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|336253486|ref|YP_004596593.1| - 2e-15 57.3 0.0 3.5e-15 56.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|336253486|ref|YP_004596593.1| - 6.8e-10 38.7 0.0 9.4e-10 38.2 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MetW PF07021.12 gi|336253486|ref|YP_004596593.1| - 1.8e-07 31.0 0.0 2.5e-07 30.5 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW CMAS PF02353.20 gi|336253486|ref|YP_004596593.1| - 1.1e-06 28.2 0.0 1e-05 25.0 0.0 1.9 2 0 0 2 2 2 1 Mycolic acid cyclopropane synthetase Methyltransf_9 PF08003.11 gi|336253486|ref|YP_004596593.1| - 2e-06 27.0 0.0 2.7e-06 26.5 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) TPMT PF05724.11 gi|336253486|ref|YP_004596593.1| - 1e-05 25.3 0.0 1.6e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) Methyltransf_32 PF13679.6 gi|336253486|ref|YP_004596593.1| - 6.3e-05 23.0 0.1 0.00011 22.2 0.0 1.5 2 0 0 2 2 1 1 Methyltransferase domain DREV PF05219.12 gi|336253486|ref|YP_004596593.1| - 0.00023 20.4 0.0 0.00031 19.9 0.0 1.2 1 0 0 1 1 1 1 DREV methyltransferase NodS PF05401.11 gi|336253486|ref|YP_004596593.1| - 0.00068 19.3 0.0 0.00094 18.8 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_4 PF02390.17 gi|336253486|ref|YP_004596593.1| - 0.0017 17.8 0.0 0.45 10.0 0.0 2.2 2 0 0 2 2 2 1 Putative methyltransferase Methyltransf_29 PF03141.16 gi|336253486|ref|YP_004596593.1| - 0.0027 16.3 0.0 0.0044 15.6 0.0 1.3 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase MTS PF05175.14 gi|336253486|ref|YP_004596593.1| - 0.0046 16.5 0.0 0.0072 15.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain CheR PF01739.18 gi|336253486|ref|YP_004596593.1| - 0.0092 15.5 0.0 0.56 9.6 0.0 2.4 1 1 1 2 2 2 1 CheR methyltransferase, SAM binding domain Methyltransf_24 PF13578.6 gi|336253486|ref|YP_004596593.1| - 0.014 16.4 0.1 0.039 15.0 0.1 1.8 2 0 0 2 2 1 0 Methyltransferase domain Methyltransf_8 PF05148.15 gi|336253486|ref|YP_004596593.1| - 0.038 13.8 0.0 0.094 12.5 0.0 1.6 1 1 0 1 1 1 0 Hypothetical methyltransferase TehB PF03848.14 gi|336253486|ref|YP_004596593.1| - 0.049 13.1 0.0 0.066 12.6 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB PCMT PF01135.19 gi|336253486|ref|YP_004596593.1| - 0.067 12.9 0.0 0.12 12.2 0.0 1.3 2 0 0 2 2 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PrmA PF06325.13 gi|336253486|ref|YP_004596593.1| - 0.19 11.1 0.0 0.28 10.5 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Sortilin-Vps10 PF15902.5 gi|336253487|ref|YP_004596594.1| - 2e-14 53.3 0.0 4.8e-06 25.6 0.0 3.9 1 1 2 3 3 3 3 Sortilin, neurotensin receptor 3, BNR PF02012.20 gi|336253487|ref|YP_004596594.1| - 1.1e-10 39.8 7.5 0.56 10.4 0.1 6.1 5 0 0 5 5 5 5 BNR/Asp-box repeat PSII_BNR PF14870.6 gi|336253487|ref|YP_004596594.1| - 0.00012 21.5 0.8 0.097 11.9 0.0 3.3 2 1 1 4 4 4 2 Photosynthesis system II assembly factor YCF48 MatE PF01554.18 gi|336253489|ref|YP_004596596.1| - 0.035 13.7 3.5 0.047 13.3 2.5 1.6 1 1 1 2 2 2 0 MatE DUF2157 PF09925.9 gi|336253489|ref|YP_004596596.1| - 8.5 6.2 11.5 0.37 10.6 0.6 2.3 2 1 0 2 2 2 0 Predicted membrane protein (DUF2157) Ribosomal_S24e PF01282.19 gi|336253490|ref|YP_004596597.1| - 4.8e-25 87.3 0.2 5.9e-25 87.0 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S24e Ribosomal_S27 PF01599.19 gi|336253491|ref|YP_004596598.1| - 1e-09 38.4 5.8 1.1e-09 38.3 5.5 1.3 1 1 0 1 1 1 1 Ribosomal protein S27a RNA_POL_M_15KD PF02150.16 gi|336253491|ref|YP_004596598.1| - 0.009 15.9 1.3 0.014 15.3 1.3 1.3 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit Nudix_N_2 PF14803.6 gi|336253491|ref|YP_004596598.1| - 0.063 13.2 5.0 1.8 8.5 0.2 2.1 2 0 0 2 2 2 0 Nudix N-terminal Peptidase_M22 PF00814.25 gi|336253492|ref|YP_004596599.1| - 2.1e-76 257.2 0.0 2.8e-76 256.8 0.0 1.1 1 0 0 1 1 1 1 Glycoprotease family Kdo PF06293.14 gi|336253492|ref|YP_004596599.1| - 0.0014 18.1 0.1 0.0026 17.2 0.1 1.4 1 0 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.23 gi|336253492|ref|YP_004596599.1| - 0.0029 17.6 10.0 0.013 15.4 10.0 2.1 1 1 0 1 1 1 1 Phosphotransferase enzyme family Pkinase PF00069.25 gi|336253492|ref|YP_004596599.1| - 0.15 11.4 0.0 0.22 10.8 0.0 1.2 1 0 0 1 1 1 0 Protein kinase domain DUF2071 PF09844.9 gi|336253493|ref|YP_004596600.1| - 1.7e-71 240.2 0.2 1.9e-71 240.0 0.2 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (COG2071) ADC PF06314.11 gi|336253493|ref|YP_004596600.1| - 0.0049 16.4 0.1 0.0067 16.0 0.1 1.3 1 0 0 1 1 1 1 Acetoacetate decarboxylase (ADC) GFO_IDH_MocA PF01408.22 gi|336253495|ref|YP_004596602.1| - 1.2e-24 87.4 0.2 2.4e-24 86.5 0.2 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|336253495|ref|YP_004596602.1| - 1.5e-07 31.5 0.0 2.5e-07 30.7 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain NAD_binding_2 PF03446.15 gi|336253495|ref|YP_004596602.1| - 2.1e-05 24.8 0.4 9.3e-05 22.6 0.2 2.2 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.12 gi|336253495|ref|YP_004596602.1| - 0.001 18.7 0.3 0.0021 17.7 0.0 1.6 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain F420_oxidored PF03807.17 gi|336253495|ref|YP_004596602.1| - 0.001 19.6 0.1 0.0027 18.2 0.1 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 gi|336253495|ref|YP_004596602.1| - 0.0041 16.5 0.1 0.0091 15.4 0.1 1.5 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.18 gi|336253495|ref|YP_004596602.1| - 0.078 12.9 0.1 0.13 12.1 0.1 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|336253495|ref|YP_004596602.1| - 0.12 11.9 0.2 0.45 10.1 0.1 2.0 1 1 1 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Ham1p_like PF01725.16 gi|336253496|ref|YP_004596603.1| - 2.9e-56 190.4 0.0 3.2e-56 190.2 0.0 1.0 1 0 0 1 1 1 1 Ham1 family EBV-NA3 PF05009.12 gi|336253497|ref|YP_004596604.1| - 0.014 15.0 0.6 0.019 14.5 0.6 1.2 1 0 0 1 1 1 0 Epstein-Barr virus nuclear antigen 3 (EBNA-3) SBP_bac_8 PF13416.6 gi|336253498|ref|YP_004596605.1| - 2.2e-22 80.2 0.3 2.9e-22 79.8 0.3 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|336253498|ref|YP_004596605.1| - 2.4e-13 50.7 6.0 3.3e-13 50.3 6.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.9 gi|336253498|ref|YP_004596605.1| - 0.00012 21.7 4.1 0.00027 20.7 4.1 1.6 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence SnoaL_2 PF12680.7 gi|336253498|ref|YP_004596605.1| - 0.0004 21.0 1.7 0.033 14.8 0.1 3.2 3 0 0 3 3 3 1 SnoaL-like domain MutS_V PF00488.21 gi|336253499|ref|YP_004596606.1| - 2.4e-86 288.6 0.1 7.3e-86 287.0 0.0 1.9 2 0 0 2 2 2 1 MutS domain V MutS_III PF05192.18 gi|336253499|ref|YP_004596606.1| - 3.4e-36 125.3 5.6 5.9e-36 124.5 5.6 1.4 1 0 0 1 1 1 1 MutS domain III MutS_I PF01624.20 gi|336253499|ref|YP_004596606.1| - 4.5e-28 97.7 0.0 1.5e-27 96.1 0.0 1.9 2 0 0 2 2 2 1 MutS domain I MutS_IV PF05190.18 gi|336253499|ref|YP_004596606.1| - 6.1e-26 90.6 1.9 1.4e-25 89.5 1.9 1.6 1 0 0 1 1 1 1 MutS family domain IV MutS_II PF05188.17 gi|336253499|ref|YP_004596606.1| - 2.8e-20 73.0 0.0 1.7e-19 70.5 0.0 2.4 3 0 0 3 3 3 1 MutS domain II AAA_23 PF13476.6 gi|336253499|ref|YP_004596606.1| - 0.0042 17.6 0.4 1.4 9.3 0.0 2.9 3 0 0 3 3 3 1 AAA domain AAA_14 PF13173.6 gi|336253499|ref|YP_004596606.1| - 0.1 12.6 0.0 0.47 10.5 0.0 2.2 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|336253499|ref|YP_004596606.1| - 0.13 12.0 0.0 0.28 10.9 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain APG6_N PF17675.1 gi|336253499|ref|YP_004596606.1| - 0.91 10.1 12.0 0.062 13.8 6.0 2.1 2 0 0 2 2 2 0 Apg6 coiled-coil region MCPsignal PF00015.21 gi|336253500|ref|YP_004596607.1| - 1.2e-46 158.7 48.4 5.6e-44 150.0 24.7 3.4 1 1 2 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain Protoglobin PF11563.8 gi|336253500|ref|YP_004596607.1| - 4.4e-09 36.4 0.1 1.6e-08 34.6 0.0 2.1 2 0 0 2 2 1 1 Protoglobin DUF948 PF06103.11 gi|336253500|ref|YP_004596607.1| - 4.4e-07 30.1 35.0 0.013 15.7 3.4 5.1 3 1 1 4 4 4 4 Bacterial protein of unknown function (DUF948) DUF1664 PF07889.12 gi|336253500|ref|YP_004596607.1| - 6.2e-06 26.3 29.3 0.0064 16.5 1.9 4.4 2 2 2 4 4 4 3 Protein of unknown function (DUF1664) Laminin_II PF06009.12 gi|336253500|ref|YP_004596607.1| - 5.5e-05 23.2 35.0 0.061 13.3 4.3 4.9 2 2 3 5 5 5 4 Laminin Domain II DASH_Dad2 PF08654.10 gi|336253500|ref|YP_004596607.1| - 0.00021 21.6 21.2 0.63 10.5 4.0 5.2 1 1 3 5 5 5 2 DASH complex subunit Dad2 IFT57 PF10498.9 gi|336253500|ref|YP_004596607.1| - 0.0042 16.1 3.9 0.0042 16.1 3.9 3.2 1 1 0 2 2 2 1 Intra-flagellar transport protein 57 KxDL PF10241.9 gi|336253500|ref|YP_004596607.1| - 0.0065 16.7 7.0 14 6.0 0.1 5.0 4 1 1 5 5 5 0 Uncharacterized conserved protein Spc7 PF08317.11 gi|336253500|ref|YP_004596607.1| - 0.0071 15.3 31.5 0.015 14.2 6.0 3.1 3 0 0 3 3 3 2 Spc7 kinetochore protein BLOC1_2 PF10046.9 gi|336253500|ref|YP_004596607.1| - 0.011 16.0 29.0 0.35 11.2 0.1 5.5 2 2 3 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Syntaxin_2 PF14523.6 gi|336253500|ref|YP_004596607.1| - 0.015 15.7 9.0 4 7.9 0.2 4.6 1 1 4 5 5 5 0 Syntaxin-like protein STAT_alpha PF01017.20 gi|336253500|ref|YP_004596607.1| - 0.015 15.2 6.5 1.8 8.5 0.2 3.4 3 0 0 3 3 3 0 STAT protein, all-alpha domain CorA PF01544.18 gi|336253500|ref|YP_004596607.1| - 0.016 14.5 17.3 0.13 11.6 3.1 3.3 3 1 0 3 3 3 0 CorA-like Mg2+ transporter protein DUF745 PF05335.13 gi|336253500|ref|YP_004596607.1| - 0.028 14.1 26.7 0.091 12.5 4.9 3.4 2 1 1 3 3 3 0 Protein of unknown function (DUF745) RmuC PF02646.16 gi|336253500|ref|YP_004596607.1| - 0.031 13.4 17.9 3.5 6.7 0.1 4.5 1 1 3 4 4 4 0 RmuC family Mod_r PF07200.13 gi|336253500|ref|YP_004596607.1| - 0.032 14.3 0.1 0.032 14.3 0.1 4.7 2 1 1 4 4 4 0 Modifier of rudimentary (Mod(r)) protein COG2 PF06148.11 gi|336253500|ref|YP_004596607.1| - 0.049 13.7 26.1 1 9.4 2.2 5.5 2 2 3 5 5 5 0 COG (conserved oligomeric Golgi) complex component, COG2 RecG_N PF17190.4 gi|336253500|ref|YP_004596607.1| - 0.055 14.2 8.8 0.72 10.6 0.1 4.7 3 2 1 5 5 4 0 RecG N-terminal helical domain Yuri_gagarin PF15934.5 gi|336253500|ref|YP_004596607.1| - 0.078 12.8 6.5 0.2 11.5 0.2 2.9 1 1 2 3 3 3 0 Yuri gagarin SHOCT PF09851.9 gi|336253500|ref|YP_004596607.1| - 0.091 12.5 0.6 0.31 10.8 0.6 1.9 1 0 0 1 1 1 0 Short C-terminal domain DUF4200 PF13863.6 gi|336253500|ref|YP_004596607.1| - 0.11 12.9 18.8 0.079 13.4 0.9 4.3 2 2 0 3 3 3 0 Domain of unknown function (DUF4200) DASH_Dam1 PF08653.10 gi|336253500|ref|YP_004596607.1| - 0.14 12.0 7.8 70 3.3 0.0 6.0 6 1 1 7 7 6 0 DASH complex subunit Dam1 Syntaxin-6_N PF09177.11 gi|336253500|ref|YP_004596607.1| - 0.26 11.9 27.9 0.52 10.9 1.6 5.0 2 2 2 4 4 4 0 Syntaxin 6, N-terminal ISG65-75 PF11727.8 gi|336253500|ref|YP_004596607.1| - 0.26 10.5 27.1 1.5 8.0 8.4 2.9 1 1 2 3 3 3 0 Invariant surface glycoprotein TMPIT PF07851.13 gi|336253500|ref|YP_004596607.1| - 0.29 10.4 11.3 0.78 8.9 1.1 2.8 2 2 0 2 2 2 0 TMPIT-like protein Sec5 PF15469.6 gi|336253500|ref|YP_004596607.1| - 0.3 10.9 5.4 1.4 8.7 3.3 2.8 1 1 0 1 1 1 0 Exocyst complex component Sec5 DUF489 PF04356.12 gi|336253500|ref|YP_004596607.1| - 0.31 11.0 4.9 5.1 7.1 1.9 3.0 2 1 0 2 2 2 0 Protein of unknown function (DUF489) ATG16 PF08614.11 gi|336253500|ref|YP_004596607.1| - 0.46 10.7 27.9 0.54 10.5 8.6 3.6 2 1 0 3 3 3 0 Autophagy protein 16 (ATG16) Bacillus_HBL PF05791.11 gi|336253500|ref|YP_004596607.1| - 0.48 10.2 17.6 3.6 7.4 0.6 4.9 2 1 3 5 5 5 0 Bacillus haemolytic enterotoxin (HBL) CREPT PF16566.5 gi|336253500|ref|YP_004596607.1| - 0.75 10.0 12.8 0.89 9.7 0.2 3.8 1 1 0 3 3 3 0 Cell-cycle alteration and expression-elevated protein in tumour Lipoprotein_20 PF13942.6 gi|336253500|ref|YP_004596607.1| - 0.76 9.7 5.0 1.5 8.7 0.1 3.0 3 0 0 3 3 3 0 YfhG lipoprotein Fib_alpha PF08702.10 gi|336253500|ref|YP_004596607.1| - 0.77 9.9 17.4 2.1 8.5 0.5 4.1 2 2 3 5 5 5 0 Fibrinogen alpha/beta chain family ApoO PF09769.9 gi|336253500|ref|YP_004596607.1| - 0.81 9.7 6.4 14 5.6 0.2 4.0 2 2 2 4 4 4 0 Apolipoprotein O CheZ PF04344.13 gi|336253500|ref|YP_004596607.1| - 0.83 9.5 26.0 12 5.7 12.7 3.9 1 1 2 3 3 3 0 Chemotaxis phosphatase, CheZ Fmp27_WPPW PF10359.9 gi|336253500|ref|YP_004596607.1| - 0.86 8.4 17.7 1 8.2 2.1 3.7 1 1 2 4 4 4 0 RNA pol II promoter Fmp27 protein domain Sec34 PF04136.15 gi|336253500|ref|YP_004596607.1| - 0.9 9.4 15.5 20 5.0 0.8 5.0 2 2 2 5 5 5 0 Sec34-like family HisKA PF00512.25 gi|336253500|ref|YP_004596607.1| - 0.93 9.6 15.2 3.4 7.8 0.3 5.7 3 2 0 4 4 4 0 His Kinase A (phospho-acceptor) domain FlgN PF05130.12 gi|336253500|ref|YP_004596607.1| - 0.94 10.0 20.2 3.8 8.0 3.2 3.6 1 1 3 4 4 4 0 FlgN protein Allexi_40kDa PF05549.11 gi|336253500|ref|YP_004596607.1| - 0.97 8.9 11.6 0.54 9.7 1.1 3.3 1 1 1 3 3 3 0 Allexivirus 40kDa protein Atg14 PF10186.9 gi|336253500|ref|YP_004596607.1| - 1.7 7.6 5.8 2.6 7.0 0.9 2.3 1 1 0 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 APG17 PF04108.12 gi|336253500|ref|YP_004596607.1| - 2 7.4 28.4 0.27 10.3 4.3 3.0 1 1 0 2 2 2 0 Autophagy protein Apg17 HMMR_N PF15905.5 gi|336253500|ref|YP_004596607.1| - 3.4 7.0 21.3 3.7 6.9 5.1 2.4 2 1 0 2 2 2 0 Hyaluronan mediated motility receptor N-terminal Prominin PF05478.11 gi|336253500|ref|YP_004596607.1| - 3.8 5.3 13.7 1.6 6.6 1.1 2.5 1 1 2 3 3 3 0 Prominin TPR_MLP1_2 PF07926.12 gi|336253500|ref|YP_004596607.1| - 4.9 7.2 31.7 3.5 7.7 13.7 3.8 2 2 0 2 2 2 0 TPR/MLP1/MLP2-like protein LXG PF04740.12 gi|336253500|ref|YP_004596607.1| - 5.9 6.5 24.4 2.5 7.8 2.5 4.3 2 1 3 5 5 5 0 LXG domain of WXG superfamily WXG100 PF06013.12 gi|336253500|ref|YP_004596607.1| - 5.9 7.2 26.9 5.9 7.2 3.3 6.0 1 1 5 7 7 7 0 Proteins of 100 residues with WXG Nup88 PF10168.9 gi|336253500|ref|YP_004596607.1| - 6.4 4.5 17.1 1.2 6.9 3.7 2.4 1 1 2 3 3 3 0 Nuclear pore component Cytochrom_B562 PF07361.11 gi|336253500|ref|YP_004596607.1| - 7.8 7.2 21.3 0.16 12.6 2.3 4.2 3 1 1 4 4 4 0 Cytochrome b562 AAA_13 PF13166.6 gi|336253500|ref|YP_004596607.1| - 8.4 4.9 24.9 1.6 7.3 7.2 2.3 1 1 0 2 2 2 0 AAA domain Dna2 PF08696.11 gi|336253500|ref|YP_004596607.1| - 8.7 6.1 9.0 0.94 9.2 0.5 2.8 2 1 0 2 2 2 0 DNA replication factor Dna2 SHE3 PF17078.5 gi|336253500|ref|YP_004596607.1| - 8.8 6.0 12.9 0.37 10.5 1.2 3.0 1 1 3 4 4 4 0 SWI5-dependent HO expression protein 3 tRNA_bind PF01588.20 gi|336253501|ref|YP_004596608.1| - 4.8e-14 52.3 0.0 5.8e-14 52.0 0.0 1.0 1 0 0 1 1 1 1 Putative tRNA binding domain Bac_luciferase PF00296.20 gi|336253502|ref|YP_004596609.1| - 5.1e-61 206.8 4.4 9.8e-61 205.9 4.4 1.4 1 1 0 1 1 1 1 Luciferase-like monooxygenase PEP_mutase PF13714.6 gi|336253502|ref|YP_004596609.1| - 0.058 12.9 0.1 0.13 11.6 0.0 1.6 2 0 0 2 2 2 0 Phosphoenolpyruvate phosphomutase Phos_pyr_kin PF08543.12 gi|336253503|ref|YP_004596610.1| - 8.9e-88 293.8 2.8 8.9e-88 293.8 2.8 1.7 2 0 0 2 2 2 1 Phosphomethylpyrimidine kinase ThiP_synth PF10120.9 gi|336253503|ref|YP_004596610.1| - 4.3e-56 189.1 1.2 8.7e-56 188.1 1.2 1.5 1 0 0 1 1 1 1 Thiamine-phosphate synthase PfkB PF00294.24 gi|336253503|ref|YP_004596610.1| - 1.2e-10 41.2 1.7 2.3e-10 40.3 1.7 1.4 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Carb_kinase PF01256.17 gi|336253503|ref|YP_004596610.1| - 0.00092 18.8 3.4 0.0016 18.0 3.4 1.3 1 0 0 1 1 1 1 Carbohydrate kinase HK PF02110.15 gi|336253503|ref|YP_004596610.1| - 0.078 12.4 2.3 1.2 8.5 2.3 2.3 1 1 0 1 1 1 0 Hydroxyethylthiazole kinase family AIRS_C PF02769.22 gi|336253504|ref|YP_004596611.1| - 1.4e-24 87.0 1.6 1.9e-24 86.5 1.6 1.2 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|336253504|ref|YP_004596611.1| - 1.5e-08 35.2 1.3 6.7e-08 33.1 0.1 2.2 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain YL1_C PF08265.11 gi|336253504|ref|YP_004596611.1| - 0.16 11.8 0.0 0.28 11.0 0.0 1.4 1 0 0 1 1 1 0 YL1 nuclear protein C-terminal domain MFS_MOT1 PF16983.5 gi|336253505|ref|YP_004596612.1| - 1.3e-41 141.5 32.0 3.4e-24 85.4 12.5 3.6 4 0 0 4 4 4 2 Molybdate transporter of MFS superfamily PorA PF11271.8 gi|336253505|ref|YP_004596612.1| - 1.3 8.3 9.6 0.88 8.8 4.2 2.9 2 0 0 2 2 2 0 Porin PorA DHDPS PF00701.22 gi|336253506|ref|YP_004596613.1| - 3.9e-66 222.7 0.0 4.9e-66 222.4 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family PRA-PH PF01503.17 gi|336253506|ref|YP_004596613.1| - 0.19 12.2 1.9 4.3 7.8 0.0 2.7 3 0 0 3 3 3 0 Phosphoribosyl-ATP pyrophosphohydrolase MutL_C PF08676.11 gi|336253507|ref|YP_004596614.1| - 1.2e-35 122.5 0.0 1.8e-35 121.9 0.0 1.3 1 0 0 1 1 1 1 MutL C terminal dimerisation domain DNA_mis_repair PF01119.19 gi|336253507|ref|YP_004596614.1| - 5e-33 113.3 0.0 9.2e-33 112.4 0.0 1.4 1 0 0 1 1 1 1 DNA mismatch repair protein, C-terminal domain HATPase_c_3 PF13589.6 gi|336253507|ref|YP_004596614.1| - 5e-13 49.0 0.0 1.1e-12 48.0 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.26 gi|336253507|ref|YP_004596614.1| - 1.8e-05 25.2 0.0 3.5e-05 24.3 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Macoilin PF09726.9 gi|336253507|ref|YP_004596614.1| - 2.5 6.5 5.0 3.7 6.0 5.0 1.2 1 0 0 1 1 1 0 Macoilin family SSF PF00474.17 gi|336253509|ref|YP_004596616.1| - 1.3e-42 146.1 24.2 1.9e-42 145.5 24.2 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family DUF3311 PF11755.8 gi|336253510|ref|YP_004596617.1| - 8e-15 54.5 13.6 9.3e-15 54.3 13.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3311) TRAP-gamma PF07074.12 gi|336253510|ref|YP_004596617.1| - 0.075 12.6 0.3 0.093 12.3 0.3 1.1 1 0 0 1 1 1 0 Translocon-associated protein, gamma subunit (TRAP-gamma) HTH_20 PF12840.7 gi|336253511|ref|YP_004596618.1| - 2.3e-15 56.4 0.3 5e-15 55.3 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|336253511|ref|YP_004596618.1| - 2e-05 24.1 0.0 3.6e-05 23.2 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|336253511|ref|YP_004596618.1| - 0.00014 21.6 0.0 0.00029 20.6 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|336253511|ref|YP_004596618.1| - 0.0006 19.6 0.0 0.00099 18.9 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family FaeA PF04703.12 gi|336253511|ref|YP_004596618.1| - 0.0014 19.0 0.0 0.0026 18.1 0.0 1.3 1 0 0 1 1 1 1 FaeA-like protein TrmB PF01978.19 gi|336253511|ref|YP_004596618.1| - 0.0048 16.8 0.1 0.014 15.2 0.0 1.8 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB DUF2513 PF10711.9 gi|336253511|ref|YP_004596618.1| - 0.052 13.8 0.0 0.083 13.2 0.0 1.3 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) HTH_12 PF08461.10 gi|336253511|ref|YP_004596618.1| - 0.11 12.5 0.0 0.2 11.6 0.0 1.4 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain ArsR PF09824.9 gi|336253511|ref|YP_004596618.1| - 0.2 11.2 0.0 0.3 10.7 0.0 1.2 1 0 0 1 1 1 0 ArsR transcriptional regulator Toprim_4 PF13662.6 gi|336253512|ref|YP_004596619.1| - 4.5e-12 46.3 0.4 2e-11 44.2 0.3 2.2 1 1 1 2 2 2 1 Toprim domain Toprim_2 PF13155.6 gi|336253512|ref|YP_004596619.1| - 2.3e-06 28.0 0.0 7.3e-06 26.3 0.0 2.0 1 0 0 1 1 1 1 Toprim-like Toprim PF01751.22 gi|336253512|ref|YP_004596619.1| - 0.03 14.5 0.2 0.16 12.2 0.2 2.2 1 1 0 1 1 1 0 Toprim domain Trypan_PARP PF05887.11 gi|336253513|ref|YP_004596620.1| - 0.15 12.1 6.1 0.22 11.5 6.1 1.3 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) DUF92 PF01940.16 gi|336253515|ref|YP_004596622.1| - 2.8e-50 170.9 16.6 2.8e-50 170.9 16.6 3.1 2 2 0 2 2 2 1 Integral membrane protein DUF92 Prenyltransf PF01255.19 gi|336253516|ref|YP_004596623.1| - 9.3e-24 84.2 0.0 2.5e-23 82.8 0.0 1.6 2 0 0 2 2 2 1 Putative undecaprenyl diphosphate synthase Prenyltransf PF01255.19 gi|336253518|ref|YP_004596625.1| - 6.5e-65 218.8 0.0 8.1e-65 218.5 0.0 1.1 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase Nif11 PF07862.11 gi|336253519|ref|YP_004596626.1| - 0.096 13.0 0.1 0.26 11.6 0.1 1.7 1 0 0 1 1 1 0 Nif11 domain TFIIB PF00382.19 gi|336253520|ref|YP_004596627.1| - 2e-32 111.1 0.9 2.7e-15 56.2 0.0 2.5 3 0 0 3 3 3 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|336253520|ref|YP_004596627.1| - 2e-13 49.6 0.3 3.4e-13 48.9 0.3 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding Cyclin_C PF02984.19 gi|336253520|ref|YP_004596627.1| - 0.00031 20.8 0.0 0.0063 16.6 0.0 2.2 2 0 0 2 2 2 1 Cyclin, C-terminal domain OrfB_Zn_ribbon PF07282.11 gi|336253520|ref|YP_004596627.1| - 0.0029 17.5 1.6 0.0076 16.1 0.8 2.0 2 0 0 2 2 2 1 Putative transposase DNA-binding domain Cyclin_N PF00134.23 gi|336253520|ref|YP_004596627.1| - 0.034 13.9 0.0 0.1 12.3 0.0 1.8 1 1 1 2 2 2 0 Cyclin, N-terminal domain HTH_11 PF08279.12 gi|336253520|ref|YP_004596627.1| - 0.066 13.2 0.0 0.16 12.0 0.0 1.6 1 0 0 1 1 1 0 HTH domain TFIIB_C_1 PF18542.1 gi|336253520|ref|YP_004596627.1| - 0.14 12.2 0.7 15 5.7 0.1 2.5 2 0 0 2 2 2 0 Transcription factor IIB C-terminal module 1 zinc_ribbon_9 PF14369.6 gi|336253520|ref|YP_004596627.1| - 0.21 11.9 0.3 0.21 11.9 0.3 2.0 1 1 1 2 2 2 0 zinc-ribbon zf_UBZ PF18439.1 gi|336253520|ref|YP_004596627.1| - 3.1 7.5 5.0 8.1 6.1 1.3 2.7 2 1 1 3 3 3 0 Ubiquitin-Binding Zinc Finger NAD_binding_7 PF13241.6 gi|336253521|ref|YP_004596628.1| - 7.6e-24 84.1 0.0 1.5e-23 83.2 0.0 1.5 1 0 0 1 1 1 1 Putative NAD(P)-binding Sirohm_synth_M PF14824.6 gi|336253521|ref|YP_004596628.1| - 8.6e-07 28.3 0.0 2.1e-06 27.1 0.0 1.7 1 0 0 1 1 1 1 Sirohaem biosynthesis protein central CysG_dimeriser PF10414.9 gi|336253521|ref|YP_004596628.1| - 0.028 14.1 0.6 0.16 11.7 0.0 2.3 2 0 0 2 2 2 0 Sirohaem synthase dimerisation region Peripla_BP_4 PF13407.6 gi|336253521|ref|YP_004596628.1| - 0.12 12.0 0.1 0.16 11.5 0.1 1.3 1 0 0 1 1 1 0 Periplasmic binding protein domain GlutR_N PF05201.15 gi|336253522|ref|YP_004596629.1| - 2.8e-34 118.0 0.0 6.2e-34 116.9 0.0 1.5 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, N-terminal domain Shikimate_DH PF01488.20 gi|336253522|ref|YP_004596629.1| - 3e-34 118.1 0.9 5e-34 117.3 0.2 1.7 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase GlutR_dimer PF00745.20 gi|336253522|ref|YP_004596629.1| - 7.3e-22 77.6 1.6 1.6e-21 76.6 1.6 1.6 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain F420_oxidored PF03807.17 gi|336253522|ref|YP_004596629.1| - 1.3e-06 28.9 0.2 5.8e-06 26.8 0.2 2.2 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|336253522|ref|YP_004596629.1| - 3.9e-05 23.9 0.4 0.00016 21.8 0.1 2.0 1 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase AdoHcyase_NAD PF00670.21 gi|336253522|ref|YP_004596629.1| - 0.00014 21.9 0.2 0.00032 20.8 0.2 1.5 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain OCD_Mu_crystall PF02423.15 gi|336253522|ref|YP_004596629.1| - 0.00023 20.2 0.6 0.00039 19.4 0.6 1.3 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Sacchrp_dh_NADP PF03435.18 gi|336253522|ref|YP_004596629.1| - 0.00026 21.2 1.5 0.0023 18.2 0.2 2.8 3 1 0 3 3 3 1 Saccharopine dehydrogenase NADP binding domain NAD_binding_7 PF13241.6 gi|336253522|ref|YP_004596629.1| - 0.0003 21.2 2.0 0.00065 20.1 0.3 2.3 2 0 0 2 2 2 1 Putative NAD(P)-binding Glu_dehyd_C PF16912.5 gi|336253522|ref|YP_004596629.1| - 0.00034 20.2 1.0 0.00034 20.2 1.0 2.8 4 0 0 4 4 4 1 Glucose dehydrogenase C-terminus 2-Hacid_dh_C PF02826.19 gi|336253522|ref|YP_004596629.1| - 0.001 18.5 0.1 0.002 17.5 0.1 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ThiF PF00899.21 gi|336253522|ref|YP_004596629.1| - 0.016 14.5 0.6 0.036 13.4 0.6 1.5 1 0 0 1 1 1 0 ThiF family zf-C4H2 PF10146.9 gi|336253522|ref|YP_004596629.1| - 0.078 13.3 0.2 0.13 12.5 0.2 1.3 1 0 0 1 1 1 0 Zinc finger-containing protein ApbA PF02558.16 gi|336253522|ref|YP_004596629.1| - 0.093 12.4 0.0 0.18 11.5 0.0 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA TrkA_N PF02254.18 gi|336253522|ref|YP_004596629.1| - 0.16 12.2 2.8 0.19 12.0 0.7 2.3 2 0 0 2 2 2 0 TrkA-N domain SAM_Exu PF18609.1 gi|336253522|ref|YP_004596629.1| - 0.3 11.2 1.3 1.3 9.1 1.6 2.0 2 0 0 2 2 1 0 Exuperantia SAM-like domain Pterin_4a PF01329.19 gi|336253523|ref|YP_004596630.1| - 8.5e-24 83.5 0.0 1e-23 83.3 0.0 1.0 1 0 0 1 1 1 1 Pterin 4 alpha carbinolamine dehydratase HAD_2 PF13419.6 gi|336253525|ref|YP_004596632.1| - 4.3e-10 40.0 0.0 1e-09 38.7 0.0 1.6 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|336253525|ref|YP_004596632.1| - 5.9e-08 33.3 0.1 1.1e-06 29.2 0.1 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|336253525|ref|YP_004596632.1| - 2.9e-05 24.6 0.7 4.4e-05 24.0 0.7 1.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase DUF86 PF01934.17 gi|336253525|ref|YP_004596632.1| - 0.015 15.1 0.0 0.024 14.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function DUF86 HTH_10 PF04967.12 gi|336253526|ref|YP_004596633.1| - 4.4e-18 64.8 0.1 7.3e-18 64.1 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|336253526|ref|YP_004596633.1| - 8.4e-07 29.0 4.2 1.3e-06 28.3 4.2 1.3 1 0 0 1 1 1 1 GAF and HTH_10 associated domain HTH_24 PF13412.6 gi|336253526|ref|YP_004596633.1| - 0.0005 19.6 0.0 0.0016 17.9 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|336253526|ref|YP_004596633.1| - 0.00096 19.0 0.1 0.0028 17.5 0.1 1.9 1 0 0 1 1 1 1 MarR family HTH_psq PF05225.16 gi|336253526|ref|YP_004596633.1| - 0.00098 18.8 0.2 0.0028 17.4 0.2 1.8 1 1 0 1 1 1 1 helix-turn-helix, Psq domain HTH_AsnC-type PF13404.6 gi|336253526|ref|YP_004596633.1| - 0.0011 18.8 0.3 0.0063 16.3 0.2 2.2 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_AraC PF00165.23 gi|336253526|ref|YP_004596633.1| - 0.0018 18.3 0.0 0.016 15.3 0.0 2.4 3 0 0 3 3 3 1 Bacterial regulatory helix-turn-helix proteins, AraC family GPP34 PF05719.11 gi|336253526|ref|YP_004596633.1| - 0.0035 17.4 1.4 0.0042 17.2 1.4 1.3 1 1 0 1 1 1 1 Golgi phosphoprotein 3 (GPP34) Sigma70_r4 PF04545.16 gi|336253526|ref|YP_004596633.1| - 0.0098 15.4 0.5 0.023 14.2 0.5 1.6 1 1 0 1 1 1 1 Sigma-70, region 4 Phage_CI_repr PF07022.13 gi|336253526|ref|YP_004596633.1| - 0.02 15.0 0.0 0.081 13.0 0.0 1.9 2 0 0 2 2 2 0 Bacteriophage CI repressor helix-turn-helix domain HTH_3 PF01381.22 gi|336253526|ref|YP_004596633.1| - 0.02 14.9 0.0 0.046 13.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix Malate_DH PF12434.8 gi|336253526|ref|YP_004596633.1| - 0.032 14.3 0.4 0.099 12.7 0.4 1.8 1 0 0 1 1 1 0 Malate dehydrogenase enzyme UPF0122 PF04297.14 gi|336253526|ref|YP_004596633.1| - 0.04 14.2 0.0 0.064 13.5 0.0 1.3 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like TetR_N PF00440.23 gi|336253526|ref|YP_004596633.1| - 0.04 13.7 0.1 0.11 12.3 0.1 1.9 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family Sigma70_r4_2 PF08281.12 gi|336253526|ref|YP_004596633.1| - 0.055 13.1 0.4 0.65 9.7 0.4 2.2 1 1 0 1 1 1 0 Sigma-70, region 4 GntR PF00392.21 gi|336253526|ref|YP_004596633.1| - 0.13 12.0 0.0 1.2 8.8 0.1 2.2 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_22 PF13309.6 gi|336253526|ref|YP_004596633.1| - 0.14 12.3 0.0 0.28 11.3 0.0 1.5 1 0 0 1 1 1 0 HTH domain MoeA_N PF03453.17 gi|336253527|ref|YP_004596634.1| - 1.2e-38 132.3 5.0 2.4e-38 131.4 5.0 1.5 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) PBP_like PF12727.7 gi|336253527|ref|YP_004596634.1| - 6.8e-24 84.1 0.3 5.3e-23 81.1 0.0 2.4 2 1 0 2 2 2 1 PBP superfamily domain MoCF_biosynth PF00994.24 gi|336253527|ref|YP_004596634.1| - 9.8e-24 83.7 0.0 1.7e-23 82.9 0.0 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|336253527|ref|YP_004596634.1| - 1.9e-16 60.0 0.0 7.7e-16 58.0 0.0 2.1 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) SBP_bac_11 PF13531.6 gi|336253527|ref|YP_004596634.1| - 0.071 12.8 0.0 0.15 11.8 0.0 1.5 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein Phosphonate-bd PF12974.7 gi|336253527|ref|YP_004596634.1| - 0.083 12.5 0.0 0.17 11.4 0.0 1.5 1 0 0 1 1 1 0 ABC transporter, phosphonate, periplasmic substrate-binding protein MatE PF01554.18 gi|336253528|ref|YP_004596635.1| - 2.3e-49 167.2 20.3 2e-25 89.3 5.3 2.7 2 1 0 2 2 2 2 MatE Polysacc_synt_C PF14667.6 gi|336253528|ref|YP_004596635.1| - 3.1e-09 37.0 9.6 3.1e-09 37.0 9.6 4.4 4 2 0 4 4 4 2 Polysaccharide biosynthesis C-terminal domain MurJ PF03023.14 gi|336253528|ref|YP_004596635.1| - 1.3e-08 33.9 2.4 1.3e-08 33.9 2.4 2.1 2 0 0 2 2 2 1 Lipid II flippase MurJ Lumazine_bd_2 PF12893.7 gi|336253529|ref|YP_004596636.1| - 0.19 12.4 0.0 0.25 12.0 0.0 1.2 1 0 0 1 1 1 0 Putative lumazine-binding TrkA_N PF02254.18 gi|336253530|ref|YP_004596637.1| - 3.4e-34 117.6 9.4 1e-16 61.2 2.3 2.4 2 0 0 2 2 2 2 TrkA-N domain TrkA_C PF02080.21 gi|336253530|ref|YP_004596637.1| - 3e-15 55.8 7.1 2.3e-07 30.5 0.6 3.8 4 1 0 4 4 4 2 TrkA-C domain Ion_trans_2 PF07885.16 gi|336253530|ref|YP_004596637.1| - 0.01 15.8 3.4 0.018 15.0 3.4 1.4 1 0 0 1 1 1 0 Ion channel MoeA_N PF03453.17 gi|336253531|ref|YP_004596638.1| - 8.6e-41 139.3 5.5 1.4e-40 138.6 5.5 1.4 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|336253531|ref|YP_004596638.1| - 1.8e-24 86.1 0.1 2.9e-24 85.4 0.1 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|336253531|ref|YP_004596638.1| - 8e-18 64.4 3.1 6.3e-17 61.5 0.0 3.5 3 1 0 3 3 3 1 MoeA C-terminal region (domain IV) GIDE PF12483.8 gi|336253532|ref|YP_004596639.1| - 4.3e-11 42.5 0.0 2.4e-08 33.6 0.0 3.0 2 1 0 2 2 2 1 E3 Ubiquitin ligase IncE PF17627.2 gi|336253532|ref|YP_004596639.1| - 0.13 12.2 5.2 2.7 8.0 0.1 2.3 2 0 0 2 2 2 0 Inclusion membrane protein E HSP20 PF00011.21 gi|336253533|ref|YP_004596640.1| - 8e-13 48.4 0.0 1.1e-12 48.0 0.0 1.2 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|336253533|ref|YP_004596640.1| - 0.0002 20.8 0.2 0.00036 20.0 0.2 1.5 1 1 0 1 1 1 1 HSP20-like domain found in ArsA GvpH PF05455.11 gi|336253533|ref|YP_004596640.1| - 0.065 13.3 0.6 0.065 13.3 0.6 2.3 2 1 0 2 2 2 0 GvpH Trypan_PARP PF05887.11 gi|336253533|ref|YP_004596640.1| - 0.79 9.7 8.3 1.1 9.3 8.3 1.2 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) ABC1 PF03109.16 gi|336253534|ref|YP_004596641.1| - 6.8e-27 94.0 0.0 1.8e-17 63.6 0.0 3.0 3 0 0 3 3 3 2 ABC1 family APH PF01636.23 gi|336253534|ref|YP_004596641.1| - 0.00015 21.8 0.1 0.0019 18.2 0.0 2.5 2 1 0 2 2 2 1 Phosphotransferase enzyme family Pkinase PF00069.25 gi|336253534|ref|YP_004596641.1| - 0.019 14.4 0.0 0.03 13.7 0.0 1.3 1 0 0 1 1 1 0 Protein kinase domain MR_MLE_C PF13378.6 gi|336253536|ref|YP_004596643.1| - 0.0033 17.0 0.0 0.0075 15.9 0.0 1.6 1 1 0 1 1 1 1 Enolase C-terminal domain-like EFP_N PF08207.12 gi|336253537|ref|YP_004596644.1| - 0.0001 22.3 0.0 0.011 15.7 0.0 2.2 2 0 0 2 2 2 2 Elongation factor P (EF-P) KOW-like domain EFP PF01132.20 gi|336253537|ref|YP_004596644.1| - 0.028 14.4 0.4 0.051 13.6 0.4 1.5 1 0 0 1 1 1 0 Elongation factor P (EF-P) OB domain Arginase PF00491.21 gi|336253538|ref|YP_004596645.1| - 1.8e-54 185.2 0.1 2e-54 185.0 0.1 1.0 1 0 0 1 1 1 1 Arginase family FmdA_AmdA PF03069.15 gi|336253540|ref|YP_004596647.1| - 4.9e-35 121.1 1.3 1.3e-16 60.5 0.6 2.8 1 1 1 2 2 2 2 Acetamidase/Formamidase family NIF3 PF01784.18 gi|336253541|ref|YP_004596648.1| - 5.2e-52 176.9 0.0 5.9e-52 176.7 0.0 1.0 1 0 0 1 1 1 1 NIF3 (NGG1p interacting factor 3) Glyoxalase_6 PF18029.1 gi|336253541|ref|YP_004596648.1| - 0.073 13.9 2.1 0.092 13.5 0.3 1.9 2 0 0 2 2 2 0 Glyoxalase-like domain Glyoxalase_4 PF13669.6 gi|336253541|ref|YP_004596648.1| - 0.12 12.6 1.0 0.55 10.5 0.1 2.2 2 1 1 3 3 3 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CDC45 PF02724.14 gi|336253542|ref|YP_004596649.1| - 0.46 8.7 5.8 0.56 8.4 5.8 1.1 1 0 0 1 1 1 0 CDC45-like protein NARP1 PF12569.8 gi|336253542|ref|YP_004596649.1| - 0.46 9.3 5.5 0.62 8.9 5.5 1.1 1 0 0 1 1 1 0 NMDA receptor-regulated protein 1 Zip PF02535.22 gi|336253542|ref|YP_004596649.1| - 1.2 8.3 3.6 1.6 7.9 3.6 1.2 1 0 0 1 1 1 0 ZIP Zinc transporter DS PF01916.17 gi|336253543|ref|YP_004596650.1| - 2.2e-99 332.4 0.0 2.6e-99 332.1 0.0 1.1 1 0 0 1 1 1 1 Deoxyhypusine synthase DHDPS PF00701.22 gi|336253543|ref|YP_004596650.1| - 0.14 10.8 0.0 7 5.3 0.0 2.1 2 0 0 2 2 2 0 Dihydrodipicolinate synthetase family PP2C_C PF07830.13 gi|336253544|ref|YP_004596651.1| - 0.055 13.9 1.9 0.49 10.9 0.7 2.1 1 1 1 2 2 2 0 Protein serine/threonine phosphatase 2C, C-terminal domain DUF4049 PF13258.6 gi|336253544|ref|YP_004596651.1| - 0.082 12.0 0.0 0.097 11.7 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4049) PRA-PH PF01503.17 gi|336253544|ref|YP_004596651.1| - 0.16 12.4 3.4 0.17 12.3 2.6 1.6 1 1 0 1 1 1 0 Phosphoribosyl-ATP pyrophosphohydrolase Lactamase_B_2 PF12706.7 gi|336253546|ref|YP_004596653.1| - 3e-18 66.1 0.2 4.2e-18 65.6 0.2 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|336253546|ref|YP_004596653.1| - 3e-11 43.5 0.0 1.2e-10 41.5 0.0 2.0 2 1 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|336253546|ref|YP_004596653.1| - 0.0012 18.9 7.8 0.0013 18.8 3.2 2.6 1 1 1 2 2 2 1 Metallo-beta-lactamase superfamily Pyr_redox_2 PF07992.14 gi|336253547|ref|YP_004596654.1| - 3.6e-28 98.6 0.2 4.8e-28 98.2 0.2 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|336253547|ref|YP_004596654.1| - 1.4e-12 47.5 0.0 6.4e-08 32.2 0.0 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|336253547|ref|YP_004596654.1| - 9.2e-06 25.8 0.2 2.4e-05 24.5 0.2 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|336253547|ref|YP_004596654.1| - 3.4e-05 23.6 6.4 0.00037 20.2 6.4 2.5 1 1 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|336253547|ref|YP_004596654.1| - 3.6e-05 23.0 5.0 4.3e-05 22.8 0.3 2.5 2 1 0 2 2 2 1 FAD binding domain GIDA PF01134.22 gi|336253547|ref|YP_004596654.1| - 0.00011 21.5 0.2 0.00018 20.7 0.2 1.4 1 0 0 1 1 1 1 Glucose inhibited division protein A HI0933_like PF03486.14 gi|336253547|ref|YP_004596654.1| - 0.00014 20.7 0.0 0.00047 19.0 0.1 1.7 2 0 0 2 2 2 1 HI0933-like protein FAD_oxidored PF12831.7 gi|336253547|ref|YP_004596654.1| - 0.00016 21.2 0.5 0.00026 20.5 0.5 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|336253547|ref|YP_004596654.1| - 0.00035 19.9 0.3 0.00071 18.9 0.1 1.6 2 0 0 2 2 2 1 FAD binding domain AlaDh_PNT_C PF01262.21 gi|336253547|ref|YP_004596654.1| - 0.0037 16.6 0.0 0.0062 15.9 0.0 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Thi4 PF01946.17 gi|336253547|ref|YP_004596654.1| - 0.0044 16.3 0.0 0.0084 15.4 0.0 1.4 1 0 0 1 1 1 1 Thi4 family Pyr_redox PF00070.27 gi|336253547|ref|YP_004596654.1| - 0.015 15.9 0.3 0.051 14.1 0.2 1.9 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase HAD_2 PF13419.6 gi|336253548|ref|YP_004596655.1| - 1.8e-19 70.5 0.0 2.4e-19 70.1 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|336253548|ref|YP_004596655.1| - 4.9e-13 49.8 0.6 6.6e-12 46.2 0.6 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|336253548|ref|YP_004596655.1| - 4.2e-09 37.1 1.8 5e-09 36.8 1.8 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|336253548|ref|YP_004596655.1| - 2.4e-07 30.7 0.2 5.5e-07 29.6 0.2 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase_6 PF13344.6 gi|336253548|ref|YP_004596655.1| - 0.041 14.0 0.0 0.24 11.5 0.0 2.0 2 1 0 2 2 2 0 Haloacid dehalogenase-like hydrolase DUF222 PF02720.17 gi|336253548|ref|YP_004596655.1| - 0.045 13.2 0.1 0.059 12.8 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF222) Acid_phosphat_B PF03767.14 gi|336253548|ref|YP_004596655.1| - 0.09 12.4 0.0 0.43 10.1 0.0 1.9 2 0 0 2 2 2 0 HAD superfamily, subfamily IIIB (Acid phosphatase) Putative_PNPOx PF01243.20 gi|336253549|ref|YP_004596656.1| - 5.2e-16 58.6 0.0 7.1e-16 58.2 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_ox_2 PF12900.7 gi|336253549|ref|YP_004596656.1| - 2.3e-14 53.6 0.2 2.7e-14 53.4 0.2 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyrid_ox_like PF16242.5 gi|336253549|ref|YP_004596656.1| - 0.003 17.1 0.0 0.0037 16.9 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase like F420H2_quin_red PF04075.14 gi|336253549|ref|YP_004596656.1| - 0.03 14.4 0.4 0.063 13.4 0.4 1.7 1 1 0 1 1 1 0 F420H(2)-dependent quinone reductase Glycos_transf_2 PF00535.26 gi|336253550|ref|YP_004596657.1| - 1.8e-27 96.2 0.0 4.2e-27 95.0 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|336253550|ref|YP_004596657.1| - 1.4e-12 48.0 0.0 1.2e-11 44.9 0.0 1.9 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|336253550|ref|YP_004596657.1| - 2.3e-07 30.5 0.0 3.6e-07 29.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.9 gi|336253550|ref|YP_004596657.1| - 3.4e-06 26.7 0.0 2.1e-05 24.2 0.0 1.9 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|336253550|ref|YP_004596657.1| - 1.1e-05 25.9 0.4 0.00013 22.4 0.1 2.8 2 1 1 3 3 3 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.6 gi|336253550|ref|YP_004596657.1| - 1.3e-05 25.2 0.0 0.00011 22.2 0.0 2.0 1 1 0 1 1 1 1 Glycosyl transferase family group 2 SgrT PF15894.5 gi|336253550|ref|YP_004596657.1| - 0.022 14.7 0.0 0.055 13.4 0.0 1.6 2 0 0 2 2 2 0 Inhibitor of glucose uptake transporter SgrT HhH-GPD PF00730.25 gi|336253552|ref|YP_004596659.1| - 2.6e-14 53.6 0.0 3.3e-14 53.2 0.0 1.1 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|336253552|ref|YP_004596659.1| - 6e-07 29.0 0.0 1.1e-06 28.1 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|336253552|ref|YP_004596659.1| - 0.031 14.9 0.0 0.34 11.6 0.0 2.1 2 0 0 2 2 2 0 Helix-hairpin-helix domain Opy2 PF09463.10 gi|336253552|ref|YP_004596659.1| - 0.22 11.9 3.9 0.33 11.3 3.9 1.2 1 0 0 1 1 1 0 Opy2 protein EndIII_4Fe-2S PF10576.9 gi|336253552|ref|YP_004596659.1| - 1.9 8.9 5.1 3.4 8.1 5.1 1.5 1 0 0 1 1 1 0 Iron-sulfur binding domain of endonuclease III Pectinesterase PF01095.19 gi|336253553|ref|YP_004596660.1| - 1.8e-75 253.5 0.0 2.2e-75 253.1 0.0 1.0 1 0 0 1 1 1 1 Pectinesterase Beta_helix PF13229.6 gi|336253553|ref|YP_004596660.1| - 0.022 14.6 0.0 0.033 14.0 0.0 1.3 1 0 0 1 1 1 0 Right handed beta helix region DUF2085 PF09858.9 gi|336253554|ref|YP_004596661.1| - 2.8e-12 46.9 0.3 5.6e-12 46.0 0.3 1.4 1 0 0 1 1 1 1 Predicted membrane protein (DUF2085) FUSC_2 PF13515.6 gi|336253554|ref|YP_004596661.1| - 0.0024 18.0 7.1 0.036 14.2 5.2 2.0 1 1 0 1 1 1 1 Fusaric acid resistance protein-like ThrE PF06738.12 gi|336253554|ref|YP_004596661.1| - 1.9 7.8 7.0 2.5 7.4 7.0 1.1 1 0 0 1 1 1 0 Putative threonine/serine exporter DUF543 PF04418.12 gi|336253554|ref|YP_004596661.1| - 6.5 6.8 9.1 0.91 9.6 0.3 2.7 2 1 0 3 3 3 0 Domain of unknown function (DUF543) TM2 PF05154.16 gi|336253555|ref|YP_004596662.1| - 5.4e-16 58.7 3.8 7.8e-16 58.1 3.8 1.2 1 0 0 1 1 1 1 TM2 domain zf-ribbon_3 PF13248.6 gi|336253555|ref|YP_004596662.1| - 2.7e-12 45.6 11.6 4.1e-06 26.0 2.0 2.2 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.7 gi|336253555|ref|YP_004596662.1| - 3.3e-09 36.6 7.5 5.6e-09 35.9 7.4 1.4 1 1 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|336253555|ref|YP_004596662.1| - 6.8e-07 28.8 11.4 0.0032 17.1 2.2 2.7 2 1 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|336253555|ref|YP_004596662.1| - 3.1e-05 24.6 11.3 0.0048 17.6 1.4 2.2 2 0 0 2 2 2 2 zinc-ribbon family YhfH PF14149.6 gi|336253555|ref|YP_004596662.1| - 0.00015 21.7 19.6 0.011 15.7 3.0 4.0 2 2 2 4 4 4 2 YhfH-like protein DUF2116 PF09889.9 gi|336253555|ref|YP_004596662.1| - 0.00034 20.5 7.2 0.13 12.2 3.4 2.4 2 0 0 2 2 2 2 Uncharacterized protein containing a Zn-ribbon (DUF2116) UPF0547 PF10571.9 gi|336253555|ref|YP_004596662.1| - 0.00098 19.1 13.4 0.076 13.1 1.9 2.3 2 0 0 2 2 2 2 Uncharacterised protein family UPF0547 DUF35_N PF12172.8 gi|336253555|ref|YP_004596662.1| - 0.009 15.9 5.9 0.92 9.4 0.3 2.8 2 2 0 2 2 2 2 Rubredoxin-like zinc ribbon domain (DUF35_N) HypA PF01155.19 gi|336253555|ref|YP_004596662.1| - 0.071 13.1 12.1 0.89 9.6 3.1 2.2 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-C2HC5 PF06221.13 gi|336253555|ref|YP_004596662.1| - 0.074 13.0 8.0 1.3 9.1 1.5 2.2 2 0 0 2 2 2 0 Putative zinc finger motif, C2HC5-type zf-C4H2 PF10146.9 gi|336253555|ref|YP_004596662.1| - 0.097 13.0 8.0 1.6 9.0 0.2 2.1 1 1 1 2 2 2 0 Zinc finger-containing protein TF_Zn_Ribbon PF08271.12 gi|336253555|ref|YP_004596662.1| - 0.33 10.5 12.3 1 9.0 3.9 3.3 3 1 0 3 3 3 0 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.7 gi|336253555|ref|YP_004596662.1| - 0.39 10.7 8.7 3 7.9 1.4 2.9 2 1 1 3 3 3 0 Transposase zinc-ribbon domain C1_1 PF00130.22 gi|336253555|ref|YP_004596662.1| - 0.49 10.3 9.7 2.1 8.3 0.5 2.3 2 0 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) RecR PF02132.15 gi|336253555|ref|YP_004596662.1| - 0.72 9.5 10.6 0.6 9.7 1.0 2.3 2 0 0 2 2 2 0 RecR protein Nudix_N_2 PF14803.6 gi|336253555|ref|YP_004596662.1| - 2.2 8.2 16.5 37 4.4 5.1 4.0 2 2 0 2 2 2 0 Nudix N-terminal PHF5 PF03660.14 gi|336253555|ref|YP_004596662.1| - 2.3 8.5 9.7 8.2 6.7 1.0 2.1 1 1 1 2 2 2 0 PHF5-like protein Zn_ribbon_17 PF17120.5 gi|336253555|ref|YP_004596662.1| - 2.8 7.6 9.0 2.7 7.7 0.5 2.2 2 0 0 2 2 2 0 Zinc-ribbon, C4HC2 type zinc-ribbon_6 PF10005.9 gi|336253555|ref|YP_004596662.1| - 2.8 8.7 7.2 2.5 8.8 1.4 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-C3HC4_3 PF13920.6 gi|336253555|ref|YP_004596662.1| - 4.5 7.2 10.0 8.8 6.3 2.0 2.2 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) Ribosomal_L32p PF01783.23 gi|336253555|ref|YP_004596662.1| - 7.5 6.9 5.7 6.4 7.1 1.1 2.3 2 0 0 2 2 2 0 Ribosomal L32p protein family DAO PF01266.24 gi|336253556|ref|YP_004596663.1| - 1.2e-26 94.2 0.2 1.9e-26 93.5 0.2 1.3 1 1 0 1 1 1 1 FAD dependent oxidoreductase Mqo PF06039.15 gi|336253556|ref|YP_004596663.1| - 1.4e-24 86.6 0.0 3e-23 82.1 0.0 2.0 1 1 0 1 1 1 1 Malate:quinone oxidoreductase (Mqo) Pyr_redox_2 PF07992.14 gi|336253556|ref|YP_004596663.1| - 6.8e-08 32.1 0.1 0.00043 19.6 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|336253556|ref|YP_004596663.1| - 0.00012 21.4 0.3 0.0013 18.0 0.1 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|336253556|ref|YP_004596663.1| - 0.00033 20.7 0.1 0.14 12.2 0.0 2.3 2 0 0 2 2 2 2 FAD-NAD(P)-binding Amino_oxidase PF01593.24 gi|336253556|ref|YP_004596663.1| - 0.0043 16.4 0.0 0.0077 15.6 0.0 1.5 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase FAD_binding_2 PF00890.24 gi|336253556|ref|YP_004596663.1| - 0.0045 16.1 0.0 0.0059 15.7 0.0 1.1 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.14 gi|336253556|ref|YP_004596663.1| - 0.006 15.3 0.1 0.04 12.6 0.0 1.9 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox PF00070.27 gi|336253556|ref|YP_004596663.1| - 0.012 16.2 0.2 7.6 7.2 0.0 2.7 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|336253556|ref|YP_004596663.1| - 0.024 14.9 0.2 0.11 12.8 0.0 2.2 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain Na_Ca_ex PF01699.24 gi|336253557|ref|YP_004596664.1| - 2.1e-18 66.7 29.0 7.5e-11 42.2 7.3 2.5 3 0 0 3 3 3 2 Sodium/calcium exchanger protein Zip PF02535.22 gi|336253558|ref|YP_004596665.1| - 9.5e-06 25.1 0.0 2.1e-05 23.9 0.0 1.5 1 0 0 1 1 1 1 ZIP Zinc transporter DUF2391 PF09622.10 gi|336253559|ref|YP_004596666.1| - 1.1e-06 28.1 1.1 2.2e-06 27.2 1.2 1.4 1 1 0 1 1 1 1 Putative integral membrane protein (DUF2391) 2HCT PF03390.15 gi|336253559|ref|YP_004596666.1| - 0.006 15.3 0.0 0.011 14.4 0.0 1.4 1 0 0 1 1 1 1 2-hydroxycarboxylate transporter family Acetyltransf_1 PF00583.25 gi|336253560|ref|YP_004596667.1| - 9.4e-17 61.3 0.1 2.1e-16 60.2 0.0 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|336253560|ref|YP_004596667.1| - 2.1e-12 47.1 0.1 7.6e-12 45.3 0.0 1.9 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|336253560|ref|YP_004596667.1| - 1.4e-09 38.2 0.4 9.3e-09 35.6 0.0 2.2 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|336253560|ref|YP_004596667.1| - 3.8e-06 26.8 0.0 7.3e-06 25.9 0.0 1.4 1 1 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.7 gi|336253560|ref|YP_004596667.1| - 4e-06 27.5 0.2 9.8e-06 26.3 0.0 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|336253560|ref|YP_004596667.1| - 5.2e-05 23.4 0.0 0.00019 21.6 0.0 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|336253560|ref|YP_004596667.1| - 0.00011 22.2 0.0 0.00025 21.1 0.0 1.6 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.7 gi|336253560|ref|YP_004596667.1| - 0.0084 16.2 0.0 0.018 15.1 0.0 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Mcm10 PF09332.11 gi|336253560|ref|YP_004596667.1| - 0.019 14.4 0.1 0.029 13.8 0.1 1.2 1 0 0 1 1 1 0 Mcm10 replication factor Acetyltransf_8 PF13523.6 gi|336253560|ref|YP_004596667.1| - 0.02 14.6 0.0 0.046 13.4 0.0 1.6 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain A2L_zn_ribbon PF08792.10 gi|336253560|ref|YP_004596667.1| - 0.25 11.1 1.6 8.6 6.2 0.4 2.3 2 0 0 2 2 2 0 A2L zinc ribbon domain DNA_RNApol_7kD PF03604.13 gi|336253560|ref|YP_004596667.1| - 0.26 11.0 0.6 0.47 10.2 0.6 1.5 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit AsnC_trans_reg PF01037.21 gi|336253562|ref|YP_004596669.1| - 3.5e-13 49.3 0.0 6.3e-13 48.5 0.0 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|336253562|ref|YP_004596669.1| - 2.8e-11 42.8 0.3 6.8e-11 41.6 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|336253562|ref|YP_004596669.1| - 6.2e-08 32.4 0.3 3.5e-07 30.0 0.1 2.1 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|336253562|ref|YP_004596669.1| - 2.6e-07 30.5 0.0 1e-06 28.6 0.0 2.0 2 0 0 2 2 2 1 HTH domain HTH_AsnC-type PF13404.6 gi|336253562|ref|YP_004596669.1| - 6.6e-06 25.9 0.1 9.7e-06 25.3 0.1 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_20 PF12840.7 gi|336253562|ref|YP_004596669.1| - 1.2e-05 25.3 0.6 2.7e-05 24.1 0.1 1.9 3 0 0 3 3 1 1 Helix-turn-helix domain GntR PF00392.21 gi|336253562|ref|YP_004596669.1| - 2.9e-05 23.6 0.1 7.8e-05 22.2 0.1 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_DeoR PF08220.12 gi|336253562|ref|YP_004596669.1| - 4e-05 23.3 0.1 0.00026 20.7 0.0 2.1 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_28 PF13518.6 gi|336253562|ref|YP_004596669.1| - 9.4e-05 22.5 0.0 0.00052 20.1 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|336253562|ref|YP_004596669.1| - 0.00019 21.4 0.0 0.00033 20.6 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR_2 PF12802.7 gi|336253562|ref|YP_004596669.1| - 0.00039 20.3 0.0 0.00073 19.4 0.0 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|336253562|ref|YP_004596669.1| - 0.00067 19.5 0.0 0.0012 18.6 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_10 PF04967.12 gi|336253562|ref|YP_004596669.1| - 0.00086 19.1 0.1 0.002 17.9 0.1 1.6 1 0 0 1 1 1 1 HTH DNA binding domain MarR PF01047.22 gi|336253562|ref|YP_004596669.1| - 0.0011 18.9 0.0 0.0039 17.1 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.10 gi|336253562|ref|YP_004596669.1| - 0.0017 18.1 0.1 0.0038 17.0 0.1 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain Fe_dep_repress PF01325.19 gi|336253562|ref|YP_004596669.1| - 0.0027 17.8 0.0 0.0061 16.7 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_40 PF14493.6 gi|336253562|ref|YP_004596669.1| - 0.0029 18.0 0.1 0.006 17.0 0.1 1.8 1 1 0 1 1 1 1 Helix-turn-helix domain E3_UFM1_ligase PF09743.9 gi|336253562|ref|YP_004596669.1| - 0.0039 16.8 0.1 0.0066 16.1 0.1 1.6 1 1 0 1 1 1 1 E3 UFM1-protein ligase 1 HTH_38 PF13936.6 gi|336253562|ref|YP_004596669.1| - 0.0067 16.2 0.0 0.13 12.0 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_7 PF02796.15 gi|336253562|ref|YP_004596669.1| - 0.011 15.8 0.0 0.034 14.2 0.0 1.8 2 0 0 2 2 1 0 Helix-turn-helix domain of resolvase HTH_23 PF13384.6 gi|336253562|ref|YP_004596669.1| - 0.011 15.5 0.0 0.025 14.4 0.0 1.6 2 0 0 2 2 1 0 Homeodomain-like domain GerE PF00196.19 gi|336253562|ref|YP_004596669.1| - 0.015 14.8 0.1 0.22 11.1 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family Mga PF05043.13 gi|336253562|ref|YP_004596669.1| - 0.031 14.9 0.1 0.13 12.9 0.0 1.9 2 0 0 2 2 2 0 Mga helix-turn-helix domain HTH_50 PF18024.1 gi|336253562|ref|YP_004596669.1| - 0.034 13.7 0.0 0.064 12.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|336253562|ref|YP_004596669.1| - 0.035 13.5 0.0 0.067 12.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_27 PF13463.6 gi|336253562|ref|YP_004596669.1| - 0.036 14.6 0.1 0.13 12.8 0.1 1.9 2 0 0 2 2 1 0 Winged helix DNA-binding domain Rrf2 PF02082.20 gi|336253562|ref|YP_004596669.1| - 0.038 14.3 0.1 0.14 12.5 0.0 2.0 3 0 0 3 3 1 0 Transcriptional regulator DUF742 PF05331.11 gi|336253562|ref|YP_004596669.1| - 0.074 12.9 0.1 0.26 11.1 0.0 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF742) HTH_36 PF13730.6 gi|336253562|ref|YP_004596669.1| - 0.081 12.9 0.0 0.13 12.3 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain GYD PF08734.11 gi|336253562|ref|YP_004596669.1| - 0.087 12.8 0.3 0.2 11.6 0.3 1.6 1 1 0 1 1 1 0 GYD domain HTH_41 PF14502.6 gi|336253562|ref|YP_004596669.1| - 0.093 12.4 0.1 0.53 10.0 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_1 PF00126.27 gi|336253562|ref|YP_004596669.1| - 0.11 12.5 0.0 0.28 11.2 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_29 PF13551.6 gi|336253562|ref|YP_004596669.1| - 0.12 12.4 0.0 0.2 11.7 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix Sigma70_r4_2 PF08281.12 gi|336253562|ref|YP_004596669.1| - 0.16 11.7 0.0 0.32 10.7 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 Pribosyltran PF00156.27 gi|336253563|ref|YP_004596670.1| - 9e-19 67.5 1.7 1.1e-18 67.2 1.7 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|336253563|ref|YP_004596670.1| - 0.00014 21.4 0.1 0.00022 20.8 0.1 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|336253563|ref|YP_004596670.1| - 0.0066 16.0 0.3 0.011 15.2 0.3 1.4 1 1 0 1 1 1 1 Phosphoribosyl transferase Xan_ur_permease PF00860.20 gi|336253564|ref|YP_004596671.1| - 2e-86 290.2 43.2 2.8e-86 289.7 43.2 1.2 1 0 0 1 1 1 1 Permease family Per1 PF04080.13 gi|336253564|ref|YP_004596671.1| - 0.15 11.8 0.2 0.27 11.0 0.2 1.4 1 0 0 1 1 1 0 Per1-like family adh_short_C2 PF13561.6 gi|336253565|ref|YP_004596672.1| - 2.3e-60 204.0 1.7 7.3e-59 199.2 1.7 2.0 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|336253565|ref|YP_004596672.1| - 1.3e-51 174.9 0.4 1.5e-51 174.6 0.4 1.0 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|336253565|ref|YP_004596672.1| - 7.8e-14 52.0 0.2 1e-13 51.6 0.2 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|336253565|ref|YP_004596672.1| - 3.9e-07 29.8 0.3 8.2e-07 28.7 0.2 1.5 1 1 1 2 2 2 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|336253565|ref|YP_004596672.1| - 0.00071 18.7 0.1 0.00099 18.2 0.1 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|336253565|ref|YP_004596672.1| - 0.011 14.8 0.5 0.015 14.4 0.5 1.2 1 0 0 1 1 1 0 RmlD substrate binding domain 2-Hacid_dh_C PF02826.19 gi|336253565|ref|YP_004596672.1| - 0.033 13.6 0.0 0.05 13.0 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_10 PF13460.6 gi|336253565|ref|YP_004596672.1| - 0.038 13.9 1.2 0.054 13.4 1.2 1.4 1 0 0 1 1 1 0 NAD(P)H-binding GDP_Man_Dehyd PF16363.5 gi|336253565|ref|YP_004596672.1| - 0.065 12.6 0.0 0.077 12.4 0.0 1.2 1 0 0 1 1 1 0 GDP-mannose 4,6 dehydratase NAD_binding_4 PF07993.12 gi|336253565|ref|YP_004596672.1| - 0.073 12.2 0.0 0.095 11.9 0.0 1.2 1 0 0 1 1 1 0 Male sterility protein Aldedh PF00171.22 gi|336253566|ref|YP_004596673.1| - 1e-159 532.0 1.9 1.2e-159 531.8 1.9 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family OmdA PF13376.6 gi|336253566|ref|YP_004596673.1| - 3 7.9 4.9 0.67 10.0 0.9 2.0 2 0 0 2 2 2 0 Bacteriocin-protection, YdeI or OmpD-Associated DUF1724 PF08350.10 gi|336253567|ref|YP_004596674.1| - 3.9e-06 26.9 0.0 7.1e-06 26.1 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_5 PF01022.20 gi|336253567|ref|YP_004596674.1| - 6.2e-05 22.8 0.1 0.00081 19.2 0.0 2.3 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.6 gi|336253567|ref|YP_004596674.1| - 0.0001 22.2 0.1 0.00026 20.9 0.1 1.7 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_IclR PF09339.10 gi|336253567|ref|YP_004596674.1| - 0.00051 19.8 0.4 0.002 17.9 0.0 2.1 2 0 0 2 2 2 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|336253567|ref|YP_004596674.1| - 0.00075 19.3 1.6 0.00096 19.0 0.2 1.9 2 0 0 2 2 2 1 MarR family Trp_repressor PF01371.19 gi|336253567|ref|YP_004596674.1| - 0.0042 17.2 0.1 0.04 14.0 0.0 2.2 2 0 0 2 2 2 1 Trp repressor protein HTH_23 PF13384.6 gi|336253567|ref|YP_004596674.1| - 0.0096 15.7 0.1 0.03 14.1 0.1 1.8 1 0 0 1 1 1 1 Homeodomain-like domain HTH_45 PF14947.6 gi|336253567|ref|YP_004596674.1| - 0.026 14.5 0.0 0.044 13.8 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix MarR PF01047.22 gi|336253567|ref|YP_004596674.1| - 0.028 14.3 0.0 0.064 13.2 0.0 1.6 1 0 0 1 1 1 0 MarR family HTH_26 PF13443.6 gi|336253567|ref|YP_004596674.1| - 0.03 14.7 0.0 0.087 13.3 0.0 1.8 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain HTH_7 PF02796.15 gi|336253567|ref|YP_004596674.1| - 0.049 13.7 0.0 0.14 12.3 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase HTH_24 PF13412.6 gi|336253567|ref|YP_004596674.1| - 0.059 12.9 0.0 0.16 11.6 0.0 1.8 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding EamA PF00892.20 gi|336253568|ref|YP_004596675.1| - 3.2e-33 114.8 38.3 2.6e-19 69.7 13.1 2.0 2 0 0 2 2 2 2 EamA-like transporter family TMEM234 PF10639.9 gi|336253568|ref|YP_004596675.1| - 0.16 12.0 4.1 1.1 9.4 1.0 2.4 2 0 0 2 2 2 0 Putative transmembrane family 234 PGPGW PF09656.10 gi|336253568|ref|YP_004596675.1| - 0.4 10.2 11.0 1.9 8.1 0.1 3.5 3 0 0 3 3 3 0 Putative transmembrane protein (PGPGW) eRF1_2 PF03464.15 gi|336253569|ref|YP_004596676.1| - 3.7e-23 82.3 0.0 5.9e-23 81.7 0.0 1.3 1 0 0 1 1 1 1 eRF1 domain 2 acVLRF1 PF18859.1 gi|336253569|ref|YP_004596676.1| - 9.4e-18 64.8 6.6 9.4e-18 64.8 6.6 2.2 2 1 0 2 2 2 1 Actinobacteria/chloroflexi VLRF1 release factor eRF1_3 PF03465.15 gi|336253569|ref|YP_004596676.1| - 1.9e-16 60.6 0.0 1.3e-15 57.8 0.0 2.2 1 1 0 1 1 1 1 eRF1 domain 3 baeRF_family10 PF18854.1 gi|336253569|ref|YP_004596676.1| - 3e-15 56.7 0.7 3e-15 56.7 0.7 1.9 1 1 1 2 2 2 1 Bacterial archaeo-eukaryotic release factor family 10 baeRF_family3 PF18845.1 gi|336253569|ref|YP_004596676.1| - 0.00022 21.6 2.3 0.00039 20.7 2.3 1.6 1 1 0 1 1 1 1 Bacterial archaeo-eukaryotic release factor family 3 baeRF_family2 PF18844.1 gi|336253569|ref|YP_004596676.1| - 0.00038 20.5 7.5 0.00087 19.4 7.5 1.5 1 0 0 1 1 1 1 Bacterial archaeo-eukaryotic release factor family 2 baeRF_family12 PF18856.1 gi|336253569|ref|YP_004596676.1| - 0.002 18.7 0.3 0.03 14.9 0.1 2.4 2 1 0 2 2 2 1 Bacterial archaeo-eukaryotic release factor family 12 Metal_resist PF13801.6 gi|336253569|ref|YP_004596676.1| - 8.4 6.6 12.5 0.18 12.0 4.9 2.1 3 0 0 3 3 3 0 Heavy-metal resistance zinc_ribbon_4 PF13717.6 gi|336253570|ref|YP_004596677.1| - 0.011 15.7 0.1 0.023 14.6 0.1 1.6 1 0 0 1 1 1 0 zinc-ribbon domain HTH_40 PF14493.6 gi|336253570|ref|YP_004596677.1| - 0.13 12.7 0.0 0.31 11.5 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain DUF4147 PF13660.6 gi|336253571|ref|YP_004596678.1| - 1.1e-79 267.1 2.6 1.1e-79 267.1 2.6 2.2 3 0 0 3 3 3 1 Domain of unknown function (DUF4147) MOFRL PF05161.13 gi|336253571|ref|YP_004596678.1| - 1.2e-30 105.9 4.8 1.5e-30 105.6 3.2 2.1 2 0 0 2 2 2 1 MOFRL family CbiG_N PF11760.8 gi|336253571|ref|YP_004596678.1| - 0.016 15.2 0.5 0.052 13.5 0.0 2.2 2 0 0 2 2 2 0 Cobalamin synthesis G N-terminal MFS_1 PF07690.16 gi|336253572|ref|YP_004596679.1| - 5.8e-47 160.3 54.6 3.5e-35 121.6 22.4 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_4 PF06779.14 gi|336253572|ref|YP_004596679.1| - 0.3 10.3 35.7 0.47 9.7 35.7 1.2 1 0 0 1 1 1 0 Uncharacterised MFS-type transporter YbfB MFS_1_like PF12832.7 gi|336253572|ref|YP_004596679.1| - 0.37 9.6 19.9 2.9 6.6 13.9 3.2 1 1 1 2 2 2 0 MFS_1 like family DUF4225 PF13988.6 gi|336253572|ref|YP_004596679.1| - 2.8 7.5 5.9 0.25 10.9 1.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF4225) PTA_PTB PF01515.19 gi|336253573|ref|YP_004596680.1| - 3.7e-95 318.9 0.0 5.3e-95 318.4 0.0 1.2 1 0 0 1 1 1 1 Phosphate acetyl/butaryl transferase malic PF00390.19 gi|336253573|ref|YP_004596680.1| - 1.2e-28 100.1 0.0 2.4e-26 92.7 0.0 2.5 1 1 0 1 1 1 1 Malic enzyme, N-terminal domain Malic_M PF03949.15 gi|336253573|ref|YP_004596680.1| - 2.7e-21 76.0 1.9 6.1e-21 74.9 1.9 1.6 1 1 0 1 1 1 1 Malic enzyme, NAD binding domain DUF2171 PF09939.9 gi|336253574|ref|YP_004596681.1| - 0.025 14.8 1.6 0.11 12.8 1.6 2.0 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2171) Peptidase_M14 PF00246.24 gi|336253575|ref|YP_004596682.1| - 3.3e-09 37.0 0.0 7.9e-09 35.7 0.0 1.5 1 1 0 1 1 1 1 Zinc carboxypeptidase Acyl-CoA_dh_1 PF00441.24 gi|336253576|ref|YP_004596683.1| - 4.2e-52 176.3 4.1 6.6e-52 175.7 4.1 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|336253576|ref|YP_004596683.1| - 4.1e-33 114.4 0.1 1.1e-32 113.0 0.1 1.7 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|336253576|ref|YP_004596683.1| - 4e-25 87.9 0.0 1e-24 86.5 0.0 1.8 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|336253576|ref|YP_004596683.1| - 9.6e-25 87.4 8.0 1.9e-24 86.4 8.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain DUF743 PF05332.11 gi|336253576|ref|YP_004596683.1| - 0.022 14.8 0.5 0.039 14.0 0.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF743) PDZ_5 PF17817.1 gi|336253576|ref|YP_004596683.1| - 1.3 9.3 4.1 5.5 7.3 0.1 3.2 3 0 0 3 3 3 0 PDZ domain MM_CoA_mutase PF01642.22 gi|336253577|ref|YP_004596684.1| - 7e-215 714.4 0.3 8e-215 714.2 0.3 1.0 1 0 0 1 1 1 1 Methylmalonyl-CoA mutase Met_asp_mut_E PF06368.11 gi|336253577|ref|YP_004596684.1| - 0.0039 15.7 0.1 0.0075 14.8 0.1 1.4 1 0 0 1 1 1 1 Methylaspartate mutase E chain (MutE) PrkA PF06798.12 gi|336253577|ref|YP_004596684.1| - 0.41 10.2 6.8 0.25 10.9 4.6 1.7 2 0 0 2 2 2 0 PrkA serine protein kinase C-terminal domain Abhydrolase_6 PF12697.7 gi|336253578|ref|YP_004596685.1| - 4e-25 89.7 3.5 4.9e-25 89.4 3.5 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|336253578|ref|YP_004596685.1| - 1.3e-19 70.9 0.0 1.5e-18 67.4 0.0 2.0 1 1 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|336253578|ref|YP_004596685.1| - 1.6e-15 57.0 0.1 6.2e-15 55.1 0.1 1.8 1 1 0 1 1 1 1 Serine aminopeptidase, S33 UPF0227 PF05728.12 gi|336253578|ref|YP_004596685.1| - 4.9e-05 23.4 0.0 0.00014 21.8 0.0 1.7 2 0 0 2 2 2 1 Uncharacterised protein family (UPF0227) Ndr PF03096.14 gi|336253578|ref|YP_004596685.1| - 0.00098 17.9 0.0 0.002 16.9 0.0 1.4 2 0 0 2 2 2 1 Ndr family Esterase PF00756.20 gi|336253578|ref|YP_004596685.1| - 0.021 14.5 0.0 0.028 14.0 0.0 1.4 1 1 0 1 1 1 0 Putative esterase Palm_thioest PF02089.15 gi|336253578|ref|YP_004596685.1| - 0.025 14.4 0.0 0.03 14.2 0.0 1.1 1 0 0 1 1 1 0 Palmitoyl protein thioesterase Abhydrolase_5 PF12695.7 gi|336253578|ref|YP_004596685.1| - 0.058 13.2 0.0 0.22 11.3 0.0 1.9 2 1 1 3 3 3 0 Alpha/beta hydrolase family DUF2920 PF11144.8 gi|336253578|ref|YP_004596685.1| - 0.072 12.2 0.0 0.087 12.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2920) PGAP1 PF07819.13 gi|336253578|ref|YP_004596685.1| - 0.073 12.8 0.1 2 8.1 0.1 2.1 1 1 1 2 2 2 0 PGAP1-like protein Ser_hydrolase PF06821.13 gi|336253578|ref|YP_004596685.1| - 0.1 12.5 0.0 3.8 7.3 0.0 2.1 2 0 0 2 2 2 0 Serine hydrolase Thioesterase PF00975.20 gi|336253578|ref|YP_004596685.1| - 0.16 12.1 0.0 0.24 11.5 0.0 1.3 1 0 0 1 1 1 0 Thioesterase domain Peptidase_S28 PF05577.12 gi|336253578|ref|YP_004596685.1| - 0.28 9.9 0.0 0.4 9.4 0.0 1.1 1 0 0 1 1 1 0 Serine carboxypeptidase S28 adh_short_C2 PF13561.6 gi|336253579|ref|YP_004596686.1| - 9.8e-48 162.7 0.0 1.4e-47 162.3 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|336253579|ref|YP_004596686.1| - 2.9e-38 131.3 0.0 3.4e-38 131.1 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|336253579|ref|YP_004596686.1| - 3.1e-08 33.7 0.0 5.1e-08 33.0 0.0 1.3 1 0 0 1 1 1 1 KR domain 3HCDH_N PF02737.18 gi|336253579|ref|YP_004596686.1| - 0.016 15.1 0.1 0.031 14.2 0.1 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Cupin_2 PF07883.11 gi|336253580|ref|YP_004596687.1| - 3.9e-16 58.5 0.4 5.4e-16 58.1 0.4 1.2 1 0 0 1 1 1 1 Cupin domain CDO_I PF05995.12 gi|336253580|ref|YP_004596687.1| - 0.0002 20.7 0.0 0.01 15.1 0.0 2.1 1 1 0 1 1 1 1 Cysteine dioxygenase type I Cupin_3 PF05899.12 gi|336253580|ref|YP_004596687.1| - 0.00049 19.7 0.1 0.00068 19.3 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) HutD PF05962.11 gi|336253580|ref|YP_004596687.1| - 0.0013 18.8 0.0 0.0016 18.5 0.0 1.2 1 0 0 1 1 1 1 HutD MannoseP_isomer PF01050.18 gi|336253580|ref|YP_004596687.1| - 0.0013 18.6 0.0 0.0015 18.4 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase AraC_binding PF02311.19 gi|336253580|ref|YP_004596687.1| - 0.0016 18.4 0.0 0.0021 18.0 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain PCO_ADO PF07847.12 gi|336253580|ref|YP_004596687.1| - 0.024 14.1 0.0 0.052 13.0 0.0 1.5 1 1 0 2 2 2 0 PCO_ADO Auxin_BP PF02041.16 gi|336253580|ref|YP_004596687.1| - 0.17 11.5 0.2 0.39 10.4 0.2 1.7 1 1 0 1 1 1 0 Auxin binding protein FAA_hydrolase PF01557.18 gi|336253581|ref|YP_004596688.1| - 8.1e-48 163.0 0.0 9.8e-48 162.7 0.0 1.1 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family PALP PF00291.25 gi|336253582|ref|YP_004596689.1| - 1.5e-70 238.0 4.7 1.8e-70 237.7 4.7 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Metallophos_2 PF12850.7 gi|336253583|ref|YP_004596690.1| - 1.5e-07 31.7 0.6 8.5e-07 29.3 0.5 2.0 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|336253583|ref|YP_004596690.1| - 6.5e-07 30.1 0.3 1.6e-05 25.6 0.3 2.2 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 gi|336253583|ref|YP_004596690.1| - 6.9e-06 25.6 0.0 1.3e-05 24.7 0.0 1.3 1 1 0 1 1 1 1 Metallophosphoesterase, calcineurin superfamily zinc-ribbons_6 PF07191.12 gi|336253584|ref|YP_004596691.1| - 0.00012 22.0 0.7 0.00014 21.8 0.7 1.1 1 0 0 1 1 1 1 zinc-ribbons Zn-ribbon_8 PF09723.10 gi|336253584|ref|YP_004596691.1| - 0.00061 19.9 3.8 0.00094 19.3 3.8 1.4 1 0 0 1 1 1 1 Zinc ribbon domain DZR PF12773.7 gi|336253584|ref|YP_004596691.1| - 0.0017 18.4 1.2 0.0021 18.0 1.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon HypA PF01155.19 gi|336253584|ref|YP_004596691.1| - 0.0029 17.6 1.1 0.0029 17.6 1.1 1.0 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF1272 PF06906.11 gi|336253584|ref|YP_004596691.1| - 0.01 15.9 4.6 0.023 14.8 4.6 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF1272) TackOD1 PF18551.1 gi|336253584|ref|YP_004596691.1| - 0.02 14.6 0.6 0.02 14.5 0.6 1.0 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 zf-P11 PF03854.14 gi|336253584|ref|YP_004596691.1| - 0.021 14.5 0.4 0.026 14.2 0.4 1.1 1 0 0 1 1 1 0 P-11 zinc finger Zn_Tnp_IS91 PF14319.6 gi|336253584|ref|YP_004596691.1| - 0.051 13.6 1.4 0.059 13.4 1.4 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain zf_UBZ PF18439.1 gi|336253584|ref|YP_004596691.1| - 0.069 12.7 2.4 0.81 9.3 0.2 2.1 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger Zn_ribbon_SprT PF17283.2 gi|336253584|ref|YP_004596691.1| - 0.074 13.0 2.3 0.15 11.9 2.3 1.6 1 1 0 1 1 1 0 SprT-like zinc ribbon domain zf-Mss51 PF13824.6 gi|336253584|ref|YP_004596691.1| - 0.11 12.6 4.7 0.97 9.6 4.7 2.0 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 zinc_ribbon_5 PF13719.6 gi|336253584|ref|YP_004596691.1| - 0.11 12.2 0.9 2.3 8.0 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zf-C4_Topoisom PF01396.19 gi|336253584|ref|YP_004596691.1| - 0.17 11.7 5.5 1 9.2 0.5 2.1 1 1 1 2 2 2 0 Topoisomerase DNA binding C4 zinc finger DNA_RNApol_7kD PF03604.13 gi|336253584|ref|YP_004596691.1| - 0.18 11.5 4.1 0.37 10.5 4.1 1.5 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit DUF983 PF06170.12 gi|336253584|ref|YP_004596691.1| - 0.36 11.2 0.3 0.36 11.2 0.3 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF983) AP_endonuc_2 PF01261.24 gi|336253586|ref|YP_004596693.1| - 6.6e-19 68.2 3.2 1e-18 67.6 3.2 1.3 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel UxuA PF03786.13 gi|336253586|ref|YP_004596693.1| - 0.094 11.5 0.0 0.16 10.7 0.0 1.3 1 0 0 1 1 1 0 D-mannonate dehydratase (UxuA) Rubredoxin_2 PF18073.1 gi|336253587|ref|YP_004596694.1| - 0.0012 18.6 1.8 0.036 13.8 0.2 2.4 2 0 0 2 2 2 1 Rubredoxin metal binding domain Lar_restr_allev PF14354.6 gi|336253587|ref|YP_004596694.1| - 0.0088 16.4 0.5 0.011 16.1 0.5 1.1 1 0 0 1 1 1 1 Restriction alleviation protein Lar Zn_ribbon_SprT PF17283.2 gi|336253587|ref|YP_004596694.1| - 0.12 12.3 5.2 0.28 11.1 1.1 2.4 1 1 1 2 2 2 0 SprT-like zinc ribbon domain Rubredoxin PF00301.20 gi|336253587|ref|YP_004596694.1| - 0.22 11.6 3.7 0.33 11.0 0.4 2.1 2 0 0 2 2 2 0 Rubredoxin Ogr_Delta PF04606.12 gi|336253587|ref|YP_004596694.1| - 1.1 9.4 3.9 0.67 10.0 1.7 1.9 1 1 1 2 2 2 0 Ogr/Delta-like zinc finger zf-MIZ PF02891.20 gi|336253587|ref|YP_004596694.1| - 5.9 6.7 7.0 7.8 6.3 1.4 2.2 1 1 1 2 2 2 0 MIZ/SP-RING zinc finger Spermine_synth PF01564.17 gi|336253588|ref|YP_004596695.1| - 1.3e-09 37.8 0.0 1.9e-09 37.2 0.0 1.2 1 0 0 1 1 1 1 Spermine/spermidine synthase domain MTS PF05175.14 gi|336253588|ref|YP_004596695.1| - 0.043 13.4 0.0 0.072 12.6 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_30 PF05430.11 gi|336253588|ref|YP_004596695.1| - 0.063 13.2 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 S-adenosyl-L-methionine-dependent methyltransferase PCMT PF01135.19 gi|336253588|ref|YP_004596695.1| - 0.16 11.7 0.0 0.28 10.9 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) PrgI PF12666.7 gi|336253588|ref|YP_004596695.1| - 0.2 12.4 8.0 3.2 8.5 0.8 3.4 3 0 0 3 3 3 0 PrgI family protein Polyketide_cyc2 PF10604.9 gi|336253590|ref|YP_004596697.1| - 0.00043 20.6 1.1 0.00084 19.6 1.1 1.6 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport CBM60 PF16841.5 gi|336253591|ref|YP_004596698.1| - 0.016 15.6 0.2 0.51 10.8 0.1 3.1 2 0 0 2 2 2 0 Ca-dependent carbohydrate-binding module xylan-binding Cytochrom_B559a PF00284.20 gi|336253592|ref|YP_004596699.1| - 0.16 11.8 0.1 0.27 11.0 0.1 1.4 1 0 0 1 1 1 0 Lumenal portion of Cytochrome b559, alpha (gene psbE) subunit ArsA_ATPase PF02374.15 gi|336253593|ref|YP_004596700.1| - 2.6e-69 233.7 0.0 3e-69 233.5 0.0 1.0 1 0 0 1 1 1 1 Anion-transporting ATPase CbiA PF01656.23 gi|336253593|ref|YP_004596700.1| - 1.2e-09 38.3 0.0 3.4e-09 36.8 0.0 1.8 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|336253593|ref|YP_004596700.1| - 1.9e-09 37.7 0.0 3.4e-09 36.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain ParA PF10609.9 gi|336253593|ref|YP_004596700.1| - 2.1e-05 24.1 0.0 0.0013 18.2 0.0 2.2 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase AAA_26 PF13500.6 gi|336253593|ref|YP_004596700.1| - 0.0034 17.2 0.0 0.12 12.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain ATPase PF06745.13 gi|336253593|ref|YP_004596700.1| - 0.01 15.2 0.1 0.018 14.4 0.1 1.4 1 1 0 1 1 1 0 KaiC PhoH PF02562.16 gi|336253593|ref|YP_004596700.1| - 0.012 15.1 0.1 0.025 14.0 0.0 1.5 2 0 0 2 2 2 0 PhoH-like protein AAA_16 PF13191.6 gi|336253593|ref|YP_004596700.1| - 0.014 15.8 0.3 0.051 14.0 0.3 2.0 1 1 0 1 1 1 0 AAA ATPase domain Fer4_NifH PF00142.18 gi|336253593|ref|YP_004596700.1| - 0.021 14.3 0.1 0.051 13.0 0.0 1.6 2 0 0 2 2 2 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_25 PF13481.6 gi|336253593|ref|YP_004596700.1| - 0.021 14.4 3.4 0.052 13.1 1.8 2.3 2 1 1 3 3 3 0 AAA domain CHAD PF05235.14 gi|336253593|ref|YP_004596700.1| - 0.052 13.5 2.7 0.11 12.5 0.5 2.0 2 0 0 2 2 2 0 CHAD domain Tir_receptor_N PF07490.11 gi|336253593|ref|YP_004596700.1| - 0.061 13.2 0.1 0.097 12.5 0.1 1.3 1 0 0 1 1 1 0 Translocated intimin receptor (Tir) N-terminus AAA_33 PF13671.6 gi|336253593|ref|YP_004596700.1| - 0.073 13.2 0.4 0.38 10.9 0.0 2.4 3 1 0 3 3 3 0 AAA domain CBP_BcsQ PF06564.12 gi|336253593|ref|YP_004596700.1| - 0.094 12.2 0.0 0.14 11.6 0.0 1.2 1 0 0 1 1 1 0 Cellulose biosynthesis protein BcsQ NB-ARC PF00931.22 gi|336253593|ref|YP_004596700.1| - 0.1 11.8 0.1 0.21 10.7 0.1 1.4 1 0 0 1 1 1 0 NB-ARC domain Zeta_toxin PF06414.12 gi|336253593|ref|YP_004596700.1| - 0.11 11.8 0.3 0.24 10.6 0.0 1.7 2 0 0 2 2 2 0 Zeta toxin AAA_24 PF13479.6 gi|336253593|ref|YP_004596700.1| - 0.16 11.7 0.1 1.4 8.6 0.1 2.4 2 1 0 2 2 2 0 AAA domain SRP54 PF00448.22 gi|336253593|ref|YP_004596700.1| - 0.18 11.4 0.1 0.47 10.1 0.0 1.6 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain DUF1611 PF07755.11 gi|336253593|ref|YP_004596700.1| - 0.36 10.1 2.2 21 4.3 0.2 2.9 4 0 0 4 4 4 0 Domain of unknown function (DUF1611_C) P-loop domain AAA_18 PF13238.6 gi|336253593|ref|YP_004596700.1| - 0.72 10.4 4.3 1 9.9 0.5 2.7 1 1 1 3 3 3 0 AAA domain CstA PF02554.14 gi|336253594|ref|YP_004596701.1| - 1.3e-105 353.4 20.6 1.3e-105 353.4 20.6 1.5 2 0 0 2 2 2 1 Carbon starvation protein CstA CstA_5TM PF13722.6 gi|336253594|ref|YP_004596701.1| - 3.5e-31 108.0 3.7 3.5e-31 108.0 3.7 4.4 5 1 0 5 5 5 1 5TM C-terminal transporter carbon starvation CstA MMR_HSR1_C PF08438.10 gi|336253597|ref|YP_004596704.1| - 3.7e-32 111.2 0.0 7.2e-32 110.3 0.0 1.4 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.23 gi|336253597|ref|YP_004596704.1| - 1e-19 70.7 0.0 1.4e-18 67.0 0.0 2.8 2 2 0 2 2 2 1 50S ribosome-binding GTPase TGS PF02824.21 gi|336253597|ref|YP_004596704.1| - 6.6e-08 32.5 0.0 1.5e-07 31.3 0.0 1.6 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.18 gi|336253597|ref|YP_004596704.1| - 2.2e-06 27.3 0.0 0.00039 20.0 0.0 2.6 3 0 0 3 3 3 1 Ferrous iron transport protein B GTP_EFTU PF00009.27 gi|336253597|ref|YP_004596704.1| - 0.034 13.7 0.0 0.074 12.6 0.0 1.6 1 0 0 1 1 1 0 Elongation factor Tu GTP binding domain Dynamin_N PF00350.23 gi|336253597|ref|YP_004596704.1| - 0.038 14.0 0.1 0.53 10.3 0.0 2.7 3 0 0 3 3 3 0 Dynamin family YchF-GTPase_C PF06071.13 gi|336253597|ref|YP_004596704.1| - 0.05 13.8 0.0 3.8 7.8 0.0 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF933) VWA_2 PF13519.6 gi|336253597|ref|YP_004596704.1| - 0.088 13.5 0.1 6.8 7.4 0.0 2.9 2 1 0 3 3 3 0 von Willebrand factor type A domain Roc PF08477.13 gi|336253597|ref|YP_004596704.1| - 0.14 12.4 0.0 2.2 8.5 0.0 2.6 3 0 0 3 3 3 0 Ras of Complex, Roc, domain of DAPkinase RsgA_GTPase PF03193.16 gi|336253597|ref|YP_004596704.1| - 0.16 11.8 0.2 8.8 6.2 0.0 2.3 2 0 0 2 2 2 0 RsgA GTPase Phage_Mu_Gam PF07352.12 gi|336253597|ref|YP_004596704.1| - 0.19 11.6 1.1 0.48 10.3 0.6 1.8 1 1 1 2 2 2 0 Bacteriophage Mu Gam like protein DUF2976 PF11190.8 gi|336253598|ref|YP_004596705.1| - 0.00071 19.3 0.6 0.00092 19.0 0.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2976) Cation_ATPase_C PF00689.21 gi|336253598|ref|YP_004596705.1| - 0.0033 17.1 1.3 0.0035 17.1 1.3 1.1 1 0 0 1 1 1 1 Cation transporting ATPase, C-terminus Ferric_reduct PF01794.19 gi|336253598|ref|YP_004596705.1| - 0.0097 16.0 0.2 0.013 15.6 0.2 1.3 1 0 0 1 1 1 1 Ferric reductase like transmembrane component DUF2417 PF10329.9 gi|336253598|ref|YP_004596705.1| - 0.1 12.0 0.6 0.13 11.7 0.1 1.4 1 1 0 1 1 1 0 Region of unknown function (DUF2417) Phage_holin_3_6 PF07332.11 gi|336253598|ref|YP_004596705.1| - 0.2 11.7 12.1 0.27 11.3 11.6 1.4 1 1 1 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III Aminotran_5 PF00266.19 gi|336253599|ref|YP_004596706.1| - 7.6e-21 74.5 0.0 9.4e-21 74.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-V Methyltransf_11 PF08241.12 gi|336253600|ref|YP_004596707.1| - 8.5e-22 77.6 0.0 1.3e-21 77.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|336253600|ref|YP_004596707.1| - 1.3e-16 61.0 0.0 2.1e-16 60.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|336253600|ref|YP_004596707.1| - 5.3e-16 58.9 0.0 7.1e-16 58.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|336253600|ref|YP_004596707.1| - 7.2e-13 48.6 0.0 8.7e-13 48.3 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|336253600|ref|YP_004596707.1| - 6.7e-12 46.0 0.0 1.1e-11 45.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|336253600|ref|YP_004596707.1| - 6.2e-08 32.3 0.0 8.1e-08 31.9 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MetW PF07021.12 gi|336253600|ref|YP_004596707.1| - 0.00011 21.8 0.0 0.00017 21.3 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_29 PF03141.16 gi|336253600|ref|YP_004596707.1| - 0.16 10.5 0.0 0.21 10.1 0.0 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase MEDS PF14417.6 gi|336253602|ref|YP_004596709.1| - 1.9e-53 180.6 1.3 6.3e-53 178.9 1.3 2.0 1 0 0 1 1 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain HATPase_c PF02518.26 gi|336253602|ref|YP_004596709.1| - 1.7e-30 105.8 0.0 9.9e-30 103.3 0.0 2.2 1 1 1 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_2 PF13185.6 gi|336253602|ref|YP_004596709.1| - 1.4e-10 41.6 5.3 0.0019 18.5 0.0 5.0 6 0 0 6 6 6 2 GAF domain GAF PF01590.26 gi|336253602|ref|YP_004596709.1| - 4e-10 40.4 0.0 0.00013 22.6 0.0 3.4 4 0 0 4 4 4 2 GAF domain GAF_3 PF13492.6 gi|336253602|ref|YP_004596709.1| - 1.6e-09 38.2 0.0 0.0059 17.0 0.0 4.1 3 1 0 3 3 3 3 GAF domain HisKA PF00512.25 gi|336253602|ref|YP_004596709.1| - 3.5e-09 36.6 0.1 3.5e-09 36.6 0.1 3.6 5 0 0 5 5 5 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.6 gi|336253602|ref|YP_004596709.1| - 0.00011 22.0 0.0 0.00026 20.9 0.0 1.6 1 0 0 1 1 1 1 GHKL domain ATPase PF06745.13 gi|336253602|ref|YP_004596709.1| - 0.002 17.5 0.0 0.0039 16.6 0.0 1.5 1 0 0 1 1 1 1 KaiC HATPase_c_2 PF13581.6 gi|336253602|ref|YP_004596709.1| - 0.035 14.1 0.0 0.085 12.8 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 gi|336253602|ref|YP_004596709.1| - 0.17 11.7 0.0 0.38 10.6 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase UPF0158 PF03682.13 gi|336253602|ref|YP_004596709.1| - 0.23 11.4 4.5 0.3 11.0 0.4 3.0 3 0 0 3 3 3 0 Uncharacterised protein family (UPF0158) Carb_kinase PF01256.17 gi|336253603|ref|YP_004596710.1| - 4.5e-34 118.0 1.8 6e-34 117.6 1.8 1.2 1 0 0 1 1 1 1 Carbohydrate kinase HK PF02110.15 gi|336253603|ref|YP_004596710.1| - 1.2e-05 24.8 0.9 0.0023 17.4 0.1 2.2 2 0 0 2 2 2 2 Hydroxyethylthiazole kinase family Pribosyltran PF00156.27 gi|336253604|ref|YP_004596711.1| - 1.8e-27 95.8 0.5 5.8e-26 90.9 0.5 2.0 1 1 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|336253604|ref|YP_004596711.1| - 0.0079 15.7 0.0 0.011 15.2 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|336253604|ref|YP_004596711.1| - 0.18 11.3 0.0 0.44 10.0 0.0 1.6 2 0 0 2 2 2 0 Phosphoribosyl transferase DUF412 PF04217.13 gi|336253605|ref|YP_004596712.1| - 0.19 11.6 1.7 0.41 10.5 1.7 1.5 1 1 0 1 1 1 0 Protein of unknown function, DUF412 HHH_5 PF14520.6 gi|336253606|ref|YP_004596713.1| - 1.4e-11 44.8 0.0 3.7e-11 43.5 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH_2 PF12826.7 gi|336253606|ref|YP_004596713.1| - 3.1e-11 43.2 0.0 8.9e-11 41.7 0.0 1.7 2 0 0 2 2 2 1 Helix-hairpin-helix motif ERCC4 PF02732.15 gi|336253606|ref|YP_004596713.1| - 1.3e-09 38.4 0.0 1.7e-09 38.1 0.0 1.1 1 0 0 1 1 1 1 ERCC4 domain HHH PF00633.23 gi|336253606|ref|YP_004596713.1| - 2.2e-06 27.3 0.2 0.00011 21.9 0.1 2.5 2 0 0 2 2 2 1 Helix-hairpin-helix motif APH PF01636.23 gi|336253607|ref|YP_004596714.1| - 7.6e-38 130.8 4.1 1.2e-37 130.1 4.1 1.3 1 0 0 1 1 1 1 Phosphotransferase enzyme family DUF1679 PF07914.11 gi|336253607|ref|YP_004596714.1| - 0.00046 19.2 0.0 0.00061 18.8 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1679) EcKinase PF02958.20 gi|336253607|ref|YP_004596714.1| - 0.0021 17.5 0.0 0.003 16.9 0.0 1.2 1 0 0 1 1 1 1 Ecdysteroid kinase Virul_fac_BrkB PF03631.15 gi|336253608|ref|YP_004596715.1| - 2.1e-33 116.0 29.2 2.6e-33 115.7 29.2 1.0 1 0 0 1 1 1 1 Virulence factor BrkB DUF1077 PF06417.12 gi|336253608|ref|YP_004596715.1| - 0.011 15.8 0.1 0.022 14.7 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1077) DUF2196 PF09962.9 gi|336253609|ref|YP_004596716.1| - 3.3e-17 62.2 1.7 3.6e-17 62.1 1.7 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2196) SNN_linker PF09050.10 gi|336253609|ref|YP_004596716.1| - 0.055 13.2 0.2 0.12 12.2 0.2 1.5 1 0 0 1 1 1 0 Stannin unstructured linker Lactamase_B_2 PF12706.7 gi|336253610|ref|YP_004596717.1| - 4.7e-14 52.4 0.1 6.2e-14 52.0 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|336253610|ref|YP_004596717.1| - 8.9e-13 48.4 0.1 1.1e-12 48.1 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|336253610|ref|YP_004596717.1| - 4.2e-07 30.2 3.0 3.8e-06 27.1 1.6 2.2 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily SelR PF01641.18 gi|336253611|ref|YP_004596718.1| - 6.2e-55 184.5 0.2 7.2e-55 184.3 0.2 1.0 1 0 0 1 1 1 1 SelR domain HECT_2 PF09814.9 gi|336253611|ref|YP_004596718.1| - 0.02 13.8 0.0 1.7 7.4 0.0 2.0 1 1 1 2 2 2 0 HECT-like Ubiquitin-conjugating enzyme (E2)-binding zinc_ribbon_10 PF10058.9 gi|336253611|ref|YP_004596718.1| - 0.02 14.6 0.3 1.1 9.1 0.0 2.3 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein TF_Zn_Ribbon PF08271.12 gi|336253611|ref|YP_004596718.1| - 0.025 14.1 5.1 1.9 8.0 0.2 3.2 3 0 0 3 3 3 0 TFIIB zinc-binding Yippee-Mis18 PF03226.14 gi|336253611|ref|YP_004596718.1| - 0.028 14.6 0.3 0.075 13.2 0.3 1.7 1 1 0 1 1 1 0 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly ADD_ATRX PF17981.1 gi|336253611|ref|YP_004596718.1| - 0.031 14.1 0.2 3.8 7.5 0.0 2.2 2 0 0 2 2 2 0 Cysteine Rich ADD domain DUF1610 PF07754.11 gi|336253611|ref|YP_004596718.1| - 0.062 13.3 0.3 0.062 13.3 0.3 2.4 3 0 0 3 3 3 0 Domain of unknown function (DUF1610) zf-ribbon_3 PF13248.6 gi|336253611|ref|YP_004596718.1| - 0.12 11.8 2.1 12 5.5 0.0 2.9 3 0 0 3 3 3 0 zinc-ribbon domain DUF2072 PF09845.9 gi|336253611|ref|YP_004596718.1| - 0.16 12.2 1.7 0.47 10.7 1.6 1.8 1 1 1 2 2 2 0 Zn-ribbon containing protein DZR PF12773.7 gi|336253611|ref|YP_004596718.1| - 0.22 11.6 3.8 2.4 8.3 3.8 2.3 1 1 0 1 1 1 0 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|336253611|ref|YP_004596718.1| - 0.24 11.6 2.4 19 5.5 0.0 2.5 2 0 0 2 2 2 0 Zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|336253611|ref|YP_004596718.1| - 0.26 11.1 3.4 2.3 8.1 0.5 2.6 2 0 0 2 2 2 0 zinc-ribbon domain zf-RRN7 PF11781.8 gi|336253611|ref|YP_004596718.1| - 0.31 10.8 5.4 4 7.2 0.1 3.3 3 0 0 3 3 3 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Ribosomal_L37e PF01907.19 gi|336253611|ref|YP_004596718.1| - 0.6 10.3 3.4 3.6 7.8 0.3 2.2 2 0 0 2 2 2 0 Ribosomal protein L37e TF_Zn_Ribbon PF08271.12 gi|336253612|ref|YP_004596719.1| - 0.0039 16.7 2.5 0.077 12.5 0.3 2.1 2 0 0 2 2 2 1 TFIIB zinc-binding Rubredoxin_2 PF18073.1 gi|336253612|ref|YP_004596719.1| - 0.0044 16.7 3.4 0.19 11.5 0.3 2.2 2 0 0 2 2 2 2 Rubredoxin metal binding domain HypA PF01155.19 gi|336253612|ref|YP_004596719.1| - 0.0062 16.5 0.2 0.0063 16.5 0.2 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA PADR1 PF08063.12 gi|336253612|ref|YP_004596719.1| - 0.011 15.4 0.3 0.21 11.4 0.0 2.0 2 0 0 2 2 2 0 PADR1 (NUC008) domain zinc_ribbon_4 PF13717.6 gi|336253612|ref|YP_004596719.1| - 0.014 15.3 1.6 0.42 10.6 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain NRDD PF13597.6 gi|336253612|ref|YP_004596719.1| - 0.017 14.0 0.3 0.018 13.8 0.3 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase zf-ISL3 PF14690.6 gi|336253612|ref|YP_004596719.1| - 0.037 14.7 5.0 5.2 7.8 0.2 3.0 2 1 1 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 DUF35_N PF12172.8 gi|336253612|ref|YP_004596719.1| - 0.044 13.7 2.7 4 7.4 0.3 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DNA_RNApol_7kD PF03604.13 gi|336253612|ref|YP_004596719.1| - 0.053 13.2 0.9 0.36 10.5 0.1 2.1 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-C2H2_3 PF13878.6 gi|336253612|ref|YP_004596719.1| - 0.055 13.3 0.3 6.5 6.7 0.0 2.1 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO zf-ribbon_3 PF13248.6 gi|336253612|ref|YP_004596719.1| - 0.065 12.7 2.8 1.3 8.5 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain TFIIS_C PF01096.18 gi|336253612|ref|YP_004596719.1| - 0.071 13.0 1.6 2.6 8.0 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-RING_7 PF02591.15 gi|336253612|ref|YP_004596719.1| - 0.076 13.2 2.5 0.32 11.2 3.0 1.7 1 1 1 2 2 2 0 C4-type zinc ribbon domain Zn-ribbon_8 PF09723.10 gi|336253612|ref|YP_004596719.1| - 0.088 12.9 4.3 0.28 11.3 4.3 1.7 1 1 0 1 1 1 0 Zinc ribbon domain Zn_Tnp_IS1 PF03811.13 gi|336253612|ref|YP_004596719.1| - 0.097 12.4 0.2 0.097 12.4 0.2 2.2 2 0 0 2 2 2 0 InsA N-terminal domain Ribosomal_L32p PF01783.23 gi|336253612|ref|YP_004596719.1| - 0.099 12.9 0.2 8.3 6.8 0.1 2.1 2 0 0 2 2 2 0 Ribosomal L32p protein family UPF0547 PF10571.9 gi|336253612|ref|YP_004596719.1| - 0.18 11.9 4.1 2.3 8.4 0.0 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Saccharop_dh_N PF04455.12 gi|336253613|ref|YP_004596720.1| - 2.7e-35 120.7 0.0 6.1e-35 119.6 0.0 1.6 1 0 0 1 1 1 1 LOR/SDH bifunctional enzyme conserved region TPP_enzyme_M PF00205.22 gi|336253613|ref|YP_004596720.1| - 0.0019 17.9 0.1 0.0071 16.1 0.0 2.0 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain DS PF01916.17 gi|336253613|ref|YP_004596720.1| - 0.027 13.7 0.0 0.21 10.8 0.0 2.0 1 1 1 2 2 2 0 Deoxyhypusine synthase BAT PF15915.5 gi|336253614|ref|YP_004596721.1| - 2.5e-44 150.9 10.8 2.5e-44 150.9 10.8 2.8 3 1 0 3 3 3 1 GAF and HTH_10 associated domain HTH_10 PF04967.12 gi|336253614|ref|YP_004596721.1| - 3e-20 71.7 0.0 6.8e-20 70.6 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain GAF_2 PF13185.6 gi|336253614|ref|YP_004596721.1| - 5.9e-18 65.5 0.8 5.9e-18 65.5 0.8 2.9 3 1 1 4 4 4 1 GAF domain GAF_3 PF13492.6 gi|336253614|ref|YP_004596721.1| - 8e-08 32.7 0.1 5.2e-07 30.1 0.0 2.4 2 0 0 2 2 2 1 GAF domain PAS_4 PF08448.10 gi|336253614|ref|YP_004596721.1| - 1e-07 32.2 0.7 1e-07 32.2 0.7 3.4 1 1 2 3 3 3 1 PAS fold GAF PF01590.26 gi|336253614|ref|YP_004596721.1| - 1e-07 32.6 0.1 9.5e-07 29.5 0.0 2.5 2 0 0 2 2 2 1 GAF domain Sigma70_r4 PF04545.16 gi|336253614|ref|YP_004596721.1| - 3.8e-05 23.1 0.0 0.00019 20.9 0.0 2.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_11 PF08279.12 gi|336253614|ref|YP_004596721.1| - 0.00059 19.7 0.0 0.0015 18.4 0.0 1.7 1 0 0 1 1 1 1 HTH domain PAS PF00989.25 gi|336253614|ref|YP_004596721.1| - 0.0042 17.1 0.2 0.017 15.1 0.0 2.2 2 0 0 2 2 2 1 PAS fold UPF0122 PF04297.14 gi|336253614|ref|YP_004596721.1| - 0.0089 16.3 0.0 0.024 14.9 0.0 1.7 1 0 0 1 1 1 1 Putative helix-turn-helix protein, YlxM / p13 like DUF134 PF02001.16 gi|336253614|ref|YP_004596721.1| - 0.02 15.4 0.0 0.059 13.9 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function DUF134 GerE PF00196.19 gi|336253614|ref|YP_004596721.1| - 0.025 14.1 0.0 0.25 10.9 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.12 gi|336253614|ref|YP_004596721.1| - 0.046 13.4 0.1 0.24 11.1 0.1 2.4 1 1 0 1 1 1 0 Sigma-70, region 4 HTH_24 PF13412.6 gi|336253614|ref|YP_004596721.1| - 0.089 12.4 0.0 0.36 10.4 0.0 2.1 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding SQS_PSY PF00494.19 gi|336253615|ref|YP_004596722.1| - 2.3e-67 227.3 9.0 2.8e-67 227.0 9.0 1.0 1 0 0 1 1 1 1 Squalene/phytoene synthase polyprenyl_synt PF00348.17 gi|336253615|ref|YP_004596722.1| - 0.093 11.8 0.0 0.41 9.7 0.0 1.9 2 0 0 2 2 2 0 Polyprenyl synthetase Caroten_synth PF04240.12 gi|336253617|ref|YP_004596724.1| - 1.6e-62 211.1 14.3 2.2e-62 210.7 14.3 1.2 1 0 0 1 1 1 1 Carotenoid biosynthesis protein TMEM238 PF15125.6 gi|336253617|ref|YP_004596724.1| - 0.063 13.5 0.9 0.063 13.5 0.9 2.3 2 0 0 2 2 2 0 TMEM238 protein family UbiA PF01040.18 gi|336253618|ref|YP_004596725.1| - 1.3e-27 96.8 17.6 1.8e-27 96.3 17.6 1.3 1 0 0 1 1 1 1 UbiA prenyltransferase family Amino_oxidase PF01593.24 gi|336253619|ref|YP_004596726.1| - 3.3e-30 105.8 0.0 4.1e-30 105.5 0.0 1.1 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|336253619|ref|YP_004596726.1| - 1.1e-16 60.8 0.1 2.7e-16 59.5 0.1 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|336253619|ref|YP_004596726.1| - 5.2e-12 46.0 9.1 2.2e-10 40.6 9.1 2.5 1 1 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|336253619|ref|YP_004596726.1| - 2.7e-06 26.7 2.5 4.4e-06 26.0 2.1 1.5 2 0 0 2 2 2 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|336253619|ref|YP_004596726.1| - 3.4e-06 26.5 0.4 2.2e-05 23.8 0.5 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|336253619|ref|YP_004596726.1| - 5.2e-06 26.1 0.0 1e-05 25.1 0.0 1.5 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|336253619|ref|YP_004596726.1| - 1e-05 26.0 1.6 0.00014 22.4 0.5 2.9 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|336253619|ref|YP_004596726.1| - 0.0001 21.7 0.5 0.00018 20.9 0.5 1.3 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.14 gi|336253619|ref|YP_004596726.1| - 0.00012 20.9 0.1 0.00045 19.0 1.0 1.4 2 0 0 2 2 2 1 HI0933-like protein Thi4 PF01946.17 gi|336253619|ref|YP_004596726.1| - 0.00066 19.0 0.7 0.0011 18.3 0.7 1.3 1 0 0 1 1 1 1 Thi4 family AlaDh_PNT_C PF01262.21 gi|336253619|ref|YP_004596726.1| - 0.0021 17.4 0.5 0.0031 16.8 0.5 1.2 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox_3 PF13738.6 gi|336253619|ref|YP_004596726.1| - 0.0026 17.1 0.0 0.011 15.0 0.1 1.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|336253619|ref|YP_004596726.1| - 0.016 14.3 1.7 0.025 13.7 1.7 1.2 1 0 0 1 1 1 0 Glucose inhibited division protein A IlvN PF07991.12 gi|336253619|ref|YP_004596726.1| - 0.03 13.9 0.1 0.049 13.2 0.1 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain MCRA PF06100.11 gi|336253619|ref|YP_004596726.1| - 0.039 12.8 0.0 0.05 12.4 0.0 1.1 1 0 0 1 1 1 0 MCRA family 3HCDH_N PF02737.18 gi|336253619|ref|YP_004596726.1| - 0.05 13.5 0.3 0.084 12.7 0.3 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|336253619|ref|YP_004596726.1| - 0.054 13.9 0.0 0.089 13.2 0.0 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding ApbA PF02558.16 gi|336253619|ref|YP_004596726.1| - 0.062 13.0 0.0 0.1 12.3 0.0 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA UDPG_MGDP_dh_N PF03721.14 gi|336253619|ref|YP_004596726.1| - 0.41 10.2 0.7 0.73 9.4 0.7 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Form_Nir_trans PF01226.17 gi|336253620|ref|YP_004596727.1| - 4e-45 154.0 14.6 4.9e-45 153.7 14.6 1.1 1 0 0 1 1 1 1 Formate/nitrite transporter Usp PF00582.26 gi|336253620|ref|YP_004596727.1| - 6.9e-15 55.8 14.6 9.7e-10 39.1 0.3 4.0 3 1 0 3 3 3 2 Universal stress protein family VAPB_antitox PF02697.14 gi|336253621|ref|YP_004596728.1| - 0.0092 16.7 0.2 0.01 16.6 0.2 1.1 1 0 0 1 1 1 1 Putative antitoxin eIF-1a PF01176.19 gi|336253622|ref|YP_004596729.1| - 3.2e-19 68.5 0.1 3.8e-19 68.3 0.1 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 CxxCxxCC PF03692.15 gi|336253623|ref|YP_004596730.1| - 2.8e-05 24.7 2.6 5e-05 23.9 2.6 1.5 1 0 0 1 1 1 1 Putative zinc- or iron-chelating domain FAA_hydrolase PF01557.18 gi|336253624|ref|YP_004596731.1| - 3.3e-49 167.5 0.0 3.9e-49 167.3 0.0 1.0 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family DUF2437 PF10370.9 gi|336253624|ref|YP_004596731.1| - 0.068 14.1 0.1 0.22 12.5 0.1 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF2437) HTH_39 PF14090.6 gi|336253626|ref|YP_004596733.1| - 0.0016 18.2 0.4 0.0021 17.7 0.4 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain TRM13 PF05206.14 gi|336253626|ref|YP_004596733.1| - 0.037 13.5 0.1 0.038 13.5 0.1 1.0 1 0 0 1 1 1 0 Methyltransferase TRM13 Flg_hook PF02120.16 gi|336253627|ref|YP_004596734.1| - 0.11 12.4 0.0 0.24 11.3 0.0 1.7 1 1 0 1 1 1 0 Flagellar hook-length control protein FliK CbiZ PF01955.18 gi|336253628|ref|YP_004596735.1| - 5.6e-39 134.2 1.4 9.1e-39 133.6 1.4 1.3 1 0 0 1 1 1 1 Adenosylcobinamide amidohydrolase LytR_C PF13399.6 gi|336253628|ref|YP_004596735.1| - 0.048 14.6 2.3 0.98 10.4 0.1 2.5 2 1 0 2 2 2 0 LytR cell envelope-related transcriptional attenuator Aminotran_1_2 PF00155.21 gi|336253629|ref|YP_004596736.1| - 7.7e-41 140.5 0.0 9.5e-41 140.2 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|336253629|ref|YP_004596736.1| - 0.0088 14.6 0.0 0.012 14.2 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|336253629|ref|YP_004596736.1| - 0.037 13.3 0.0 0.061 12.6 0.0 1.3 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|336253629|ref|YP_004596736.1| - 0.067 12.5 0.0 0.23 10.7 0.0 1.9 1 1 0 1 1 1 0 Beta-eliminating lyase NTP_transf_3 PF12804.7 gi|336253631|ref|YP_004596738.1| - 1.1e-18 68.1 2.3 2.1e-18 67.2 2.3 1.5 1 1 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|336253631|ref|YP_004596738.1| - 1.7e-05 24.7 0.0 2.7e-05 24.0 0.0 1.5 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NTP_transferase PF00483.23 gi|336253631|ref|YP_004596738.1| - 0.00024 20.8 0.0 0.00028 20.6 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase CTP_transf_3 PF02348.19 gi|336253631|ref|YP_004596738.1| - 0.0016 18.4 0.0 0.011 15.7 0.0 1.9 1 1 0 1 1 1 1 Cytidylyltransferase PSK_trans_fac PF07704.11 gi|336253631|ref|YP_004596738.1| - 0.036 14.8 1.7 0.99 10.2 0.7 2.4 2 0 0 2 2 2 0 Rv0623-like transcription factor CobS PF02654.15 gi|336253632|ref|YP_004596739.1| - 7.3e-41 140.6 15.8 8.4e-41 140.4 15.8 1.0 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase CobD_Cbib PF03186.13 gi|336253633|ref|YP_004596740.1| - 2.1e-79 266.6 11.9 2.1e-79 266.6 11.9 1.3 1 1 0 1 1 1 1 CobD/Cbib protein Hydrolase PF00702.26 gi|336253634|ref|YP_004596741.1| - 1.3e-09 38.7 0.3 4.7e-09 36.8 0.3 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|336253634|ref|YP_004596741.1| - 1.9e-06 28.1 0.0 2.7e-06 27.6 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|336253634|ref|YP_004596741.1| - 1.4e-05 25.1 0.1 2.9e-05 24.0 0.1 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like eIF-5_eIF-2B PF01873.17 gi|336253635|ref|YP_004596742.1| - 2.6e-32 111.1 0.0 4.1e-32 110.5 0.0 1.3 1 0 0 1 1 1 1 Domain found in IF2B/IF5 TRAM PF01938.20 gi|336253635|ref|YP_004596742.1| - 1e-08 35.0 0.9 1.8e-08 34.2 0.9 1.4 1 0 0 1 1 1 1 TRAM domain CBM_4_9 PF02018.17 gi|336253635|ref|YP_004596742.1| - 0.047 14.0 0.1 0.084 13.1 0.1 1.5 1 0 0 1 1 1 0 Carbohydrate binding domain Lar_restr_allev PF14354.6 gi|336253635|ref|YP_004596742.1| - 0.052 13.9 0.5 0.63 10.5 0.5 2.2 1 1 1 2 2 2 0 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.10 gi|336253635|ref|YP_004596742.1| - 0.14 12.3 0.7 0.3 11.2 0.7 1.6 1 1 0 1 1 1 0 Zinc ribbon domain Nudix_N_2 PF14803.6 gi|336253635|ref|YP_004596742.1| - 0.15 12.0 3.8 0.11 12.4 1.6 1.9 2 0 0 2 2 2 0 Nudix N-terminal zf-ribbon_3 PF13248.6 gi|336253635|ref|YP_004596742.1| - 0.16 11.4 0.4 5.6 6.5 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DUF2795 PF11387.8 gi|336253636|ref|YP_004596743.1| - 0.047 13.9 0.3 1 9.6 0.3 2.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2795) Bac_luciferase PF00296.20 gi|336253637|ref|YP_004596744.1| - 2.2e-53 181.7 0.1 2.6e-53 181.5 0.1 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase DZR PF12773.7 gi|336253638|ref|YP_004596745.1| - 7e-11 42.0 31.4 1.8e-07 31.0 8.9 2.2 1 1 2 3 3 3 3 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|336253638|ref|YP_004596745.1| - 1.2e-07 31.2 13.2 0.0007 19.2 5.1 2.7 2 0 0 2 2 2 2 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|336253638|ref|YP_004596745.1| - 7.3e-07 28.4 11.2 0.0049 16.2 5.1 2.8 2 1 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|336253638|ref|YP_004596745.1| - 3.9e-06 27.5 8.3 0.00034 21.3 1.5 2.3 2 0 0 2 2 2 2 zinc-ribbon family RHH_1 PF01402.21 gi|336253638|ref|YP_004596745.1| - 6.6e-05 22.7 3.4 6.6e-05 22.7 3.4 3.3 3 1 0 3 3 3 1 Ribbon-helix-helix protein, copG family zf-NADH-PPase PF09297.11 gi|336253638|ref|YP_004596745.1| - 0.00069 19.2 11.3 0.45 10.2 0.1 4.2 4 0 0 4 4 4 2 NADH pyrophosphatase zinc ribbon domain zinc-ribbons_6 PF07191.12 gi|336253638|ref|YP_004596745.1| - 0.0047 16.9 8.2 0.013 15.4 4.1 2.3 1 1 1 2 2 2 1 zinc-ribbons Nudix_N_2 PF14803.6 gi|336253638|ref|YP_004596745.1| - 0.034 14.1 12.8 0.26 11.3 1.3 3.9 4 1 0 4 4 3 0 Nudix N-terminal zf_UBZ PF18439.1 gi|336253638|ref|YP_004596745.1| - 0.034 13.7 3.3 4.4 7.0 0.1 3.3 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger DNA_ligase_ZBD PF03119.16 gi|336253638|ref|YP_004596745.1| - 0.038 14.0 2.0 4.1 7.5 0.1 3.1 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-C3HC4_3 PF13920.6 gi|336253638|ref|YP_004596745.1| - 0.22 11.4 5.0 0.52 10.2 0.5 2.2 1 1 1 2 2 2 0 Zinc finger, C3HC4 type (RING finger) Cys_rich_KTR PF14205.6 gi|336253638|ref|YP_004596745.1| - 0.24 11.2 4.1 5.1 7.0 0.3 2.3 1 1 1 2 2 2 0 Cysteine-rich KTR NOB1_Zn_bind PF08772.11 gi|336253638|ref|YP_004596745.1| - 0.31 11.2 10.9 5.9 7.1 5.0 2.6 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like HypA PF01155.19 gi|336253638|ref|YP_004596745.1| - 0.33 11.0 8.8 2.1 8.4 2.2 2.4 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA VapB_antitoxin PF09957.9 gi|336253638|ref|YP_004596745.1| - 0.35 10.8 6.6 0.2 11.6 2.9 2.4 2 1 0 2 2 2 0 Bacterial antitoxin of type II TA system, VapB Zn-ribbon_8 PF09723.10 gi|336253638|ref|YP_004596745.1| - 0.52 10.5 12.5 1.2 9.3 3.5 3.3 2 1 1 3 3 3 0 Zinc ribbon domain Lsr2 PF11774.8 gi|336253638|ref|YP_004596745.1| - 0.62 10.2 4.6 2.7 8.2 0.2 2.4 2 0 0 2 2 2 0 Lsr2 DUF3797 PF12677.7 gi|336253638|ref|YP_004596745.1| - 1.1 9.2 3.9 7.6 6.5 0.2 2.7 2 1 0 2 2 2 0 Domain of unknown function (DUF3797) zf-C2HC_2 PF13913.6 gi|336253638|ref|YP_004596745.1| - 2 8.4 5.6 23 5.0 0.3 2.6 2 0 0 2 2 2 0 zinc-finger of a C2HC-type OrfB_Zn_ribbon PF07282.11 gi|336253638|ref|YP_004596745.1| - 2.2 8.3 10.9 1.2 9.1 4.6 2.9 1 1 2 3 3 3 0 Putative transposase DNA-binding domain Sgf11 PF08209.11 gi|336253638|ref|YP_004596745.1| - 2.3 7.9 5.9 6.8 6.4 0.3 2.7 2 1 1 3 3 3 0 Sgf11 (transcriptional regulation protein) zf-RING_7 PF02591.15 gi|336253638|ref|YP_004596745.1| - 3.3 8.0 13.3 2.8 8.2 0.6 3.3 2 1 0 2 2 2 0 C4-type zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|336253638|ref|YP_004596745.1| - 3.7 7.6 9.0 8.3 6.5 0.7 3.3 2 1 1 3 3 3 0 Transposase zinc-ribbon domain HscB_4_cys PF18256.1 gi|336253638|ref|YP_004596745.1| - 4.9 7.1 16.9 1.1 9.2 5.6 2.9 2 1 0 2 2 2 0 Co-chaperone HscB tetracysteine metal binding motif Zn_ribbon_SprT PF17283.2 gi|336253638|ref|YP_004596745.1| - 5.5 7.0 13.3 15 5.6 0.4 3.7 2 1 1 3 3 3 0 SprT-like zinc ribbon domain DNA_RNApol_7kD PF03604.13 gi|336253638|ref|YP_004596745.1| - 7.3 6.4 11.1 0.45 10.2 3.0 2.5 2 1 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-ISL3 PF14690.6 gi|336253638|ref|YP_004596745.1| - 8.5 7.1 12.8 14 6.4 0.7 3.7 2 1 1 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 NRDD PF13597.6 gi|336253638|ref|YP_004596745.1| - 9.6 4.8 8.0 7.7 5.2 5.5 1.8 1 1 1 2 2 2 0 Anaerobic ribonucleoside-triphosphate reductase RHH_1 PF01402.21 gi|336253639|ref|YP_004596746.1| - 4.3e-08 32.8 0.1 6e-08 32.3 0.1 1.3 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_8 PF17723.1 gi|336253639|ref|YP_004596746.1| - 2.7e-05 24.3 0.0 2.7e-05 24.3 0.0 1.0 1 0 0 1 1 1 1 Ribbon-Helix-Helix transcriptional regulator family CHASE3 PF05227.13 gi|336253639|ref|YP_004596746.1| - 0.022 14.7 0.8 0.024 14.5 0.8 1.1 1 0 0 1 1 1 0 CHASE3 domain PSK_trans_fac PF07704.11 gi|336253639|ref|YP_004596746.1| - 0.053 14.3 0.3 0.084 13.6 0.3 1.4 1 1 0 1 1 1 0 Rv0623-like transcription factor Tubulin PF00091.25 gi|336253640|ref|YP_004596747.1| - 8.4e-38 130.5 3.0 8.4e-38 130.5 3.0 2.2 2 1 0 2 2 2 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.8 gi|336253640|ref|YP_004596747.1| - 2e-35 121.0 0.7 2e-35 121.0 0.7 3.0 2 1 1 3 3 3 1 FtsZ family, C-terminal domain ZT_dimer PF16916.5 gi|336253640|ref|YP_004596747.1| - 0.045 13.9 0.0 0.12 12.5 0.0 1.7 1 0 0 1 1 1 0 Dimerisation domain of Zinc Transporter ThiF PF00899.21 gi|336253640|ref|YP_004596747.1| - 0.085 12.2 0.0 0.17 11.2 0.0 1.5 1 0 0 1 1 1 0 ThiF family Csm1_B PF18211.1 gi|336253640|ref|YP_004596747.1| - 0.13 12.1 0.0 0.48 10.3 0.0 1.9 1 0 0 1 1 1 0 Csm1 subunit domain B zf-ribbon_3 PF13248.6 gi|336253641|ref|YP_004596748.1| - 3.9e-10 38.8 13.4 0.00064 19.0 3.6 3.3 3 0 0 3 3 3 3 zinc-ribbon domain DZR PF12773.7 gi|336253641|ref|YP_004596748.1| - 3.1e-09 36.7 7.3 5.1e-07 29.6 2.7 2.3 2 1 0 2 2 2 2 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|336253641|ref|YP_004596748.1| - 9.6e-08 31.5 13.1 0.049 13.4 5.1 3.3 3 0 0 3 3 3 3 zinc-ribbon domain zf-NADH-PPase PF09297.11 gi|336253641|ref|YP_004596748.1| - 1.8e-06 27.5 7.5 0.064 12.9 0.2 3.7 3 1 0 3 3 3 3 NADH pyrophosphatase zinc ribbon domain Nudix_N_2 PF14803.6 gi|336253641|ref|YP_004596748.1| - 3.2e-06 26.9 10.4 0.098 12.6 0.0 4.3 3 1 0 3 3 3 2 Nudix N-terminal DUF35_N PF12172.8 gi|336253641|ref|YP_004596748.1| - 7e-05 22.6 10.4 0.24 11.3 1.8 3.3 3 0 0 3 3 3 3 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc_ribbon_15 PF17032.5 gi|336253641|ref|YP_004596748.1| - 0.019 15.7 11.1 1.8 9.3 8.3 2.6 1 1 1 2 2 2 0 zinc-ribbon family zinc-ribbons_6 PF07191.12 gi|336253641|ref|YP_004596748.1| - 0.035 14.1 8.0 0.47 10.5 0.3 3.1 2 1 1 3 3 3 0 zinc-ribbons Lar_restr_allev PF14354.6 gi|336253641|ref|YP_004596748.1| - 0.07 13.5 9.1 4.3 7.8 0.3 3.1 1 1 1 2 2 2 0 Restriction alleviation protein Lar Auto_anti-p27 PF06677.12 gi|336253641|ref|YP_004596748.1| - 0.073 13.2 11.5 5.4 7.3 0.1 3.4 3 0 0 3 3 3 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) RecR PF02132.15 gi|336253641|ref|YP_004596748.1| - 0.11 12.1 10.2 3.9 7.1 0.0 3.3 3 0 0 3 3 3 0 RecR protein zf_C2H2_13 PF18508.1 gi|336253641|ref|YP_004596748.1| - 0.21 11.2 8.3 1.3 8.7 0.1 3.3 2 1 1 3 3 3 0 Zinc finger domain zf-tcix PF14952.6 gi|336253641|ref|YP_004596748.1| - 0.34 10.6 10.7 4.9 6.8 0.1 3.2 3 0 0 3 3 3 0 Putative treble-clef, zinc-finger, Zn-binding Zn-ribbon_8 PF09723.10 gi|336253641|ref|YP_004596748.1| - 0.4 10.8 17.2 1.9 8.7 0.7 4.0 2 2 3 5 5 5 0 Zinc ribbon domain zf-RanBP PF00641.18 gi|336253641|ref|YP_004596748.1| - 0.52 9.7 13.4 0.21 10.9 2.8 3.3 3 0 0 3 3 3 0 Zn-finger in Ran binding protein and others DUF2116 PF09889.9 gi|336253641|ref|YP_004596748.1| - 0.55 10.3 4.8 32 4.6 0.0 3.2 3 0 0 3 3 3 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) Ribosomal_L32p PF01783.23 gi|336253641|ref|YP_004596748.1| - 0.6 10.4 7.5 3.5 8.0 0.2 2.9 3 0 0 3 3 3 0 Ribosomal L32p protein family zf-dskA_traR PF01258.17 gi|336253641|ref|YP_004596748.1| - 0.63 10.0 9.0 21 5.2 0.2 4.0 4 0 0 4 4 4 0 Prokaryotic dksA/traR C4-type zinc finger DUF2321 PF10083.9 gi|336253641|ref|YP_004596748.1| - 0.89 9.2 6.1 0.61 9.7 0.5 2.4 1 1 2 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2321) OrfB_Zn_ribbon PF07282.11 gi|336253641|ref|YP_004596748.1| - 0.95 9.4 11.9 4 7.4 3.2 3.1 1 1 2 3 3 3 0 Putative transposase DNA-binding domain Rpr2 PF04032.16 gi|336253641|ref|YP_004596748.1| - 1.1 9.6 7.1 20 5.6 3.6 2.9 2 1 0 2 2 2 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain zf-IS66 PF13005.7 gi|336253641|ref|YP_004596748.1| - 2.4 8.6 11.2 9.7 6.7 0.0 4.1 3 1 1 4 4 4 0 zinc-finger binding domain of transposase IS66 DUF3090 PF11290.8 gi|336253641|ref|YP_004596748.1| - 3.4 7.4 7.1 3.4 7.5 0.1 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF3090) HypA PF01155.19 gi|336253641|ref|YP_004596748.1| - 4.4 7.3 9.6 20 5.2 0.7 2.4 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF1610 PF07754.11 gi|336253641|ref|YP_004596748.1| - 5.1 7.1 14.7 0.8 9.7 1.7 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF1610) Zn_ribbon_recom PF13408.6 gi|336253641|ref|YP_004596748.1| - 5.2 7.7 8.6 37 4.9 0.2 3.5 2 1 1 3 3 3 0 Recombinase zinc beta ribbon domain zf-RING_7 PF02591.15 gi|336253641|ref|YP_004596748.1| - 9.7 6.5 11.0 8.7 6.6 0.5 3.8 4 0 0 4 4 4 0 C4-type zinc ribbon domain ATP_bind_3 PF01171.20 gi|336253642|ref|YP_004596749.1| - 1.8e-12 47.4 0.0 2.6e-12 46.8 0.0 1.3 1 0 0 1 1 1 1 PP-loop family PAPS_reduct PF01507.19 gi|336253642|ref|YP_004596749.1| - 3.5e-05 23.9 0.0 5.9e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family zn-ribbon_14 PF16503.5 gi|336253642|ref|YP_004596749.1| - 8.9e-05 21.9 3.3 8.9e-05 21.9 3.3 3.0 4 0 0 4 4 4 1 Zinc-ribbon NAD_synthase PF02540.17 gi|336253642|ref|YP_004596749.1| - 0.0015 17.7 0.0 0.0026 16.9 0.0 1.4 1 0 0 1 1 1 1 NAD synthase RecR PF02132.15 gi|336253642|ref|YP_004596749.1| - 0.037 13.6 2.1 0.037 13.6 2.1 3.2 4 0 0 4 4 4 0 RecR protein tRNA_Me_trans PF03054.16 gi|336253642|ref|YP_004596749.1| - 0.055 12.3 0.0 0.08 11.7 0.0 1.3 1 0 0 1 1 1 0 tRNA methyl transferase ThiI PF02568.14 gi|336253642|ref|YP_004596749.1| - 0.2 11.2 0.0 0.37 10.4 0.0 1.4 1 0 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) zf-ribbon_3 PF13248.6 gi|336253642|ref|YP_004596749.1| - 1.6 8.3 5.5 15 5.1 0.2 3.0 2 0 0 2 2 2 0 zinc-ribbon domain Abhydrolase_6 PF12697.7 gi|336253644|ref|YP_004596751.1| - 1.1e-05 26.2 5.0 1.4e-05 25.8 5.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.7 gi|336253644|ref|YP_004596751.1| - 0.0007 19.4 0.0 0.00084 19.1 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family HTH_20 PF12840.7 gi|336253646|ref|YP_004596753.1| - 0.00025 21.1 3.0 0.00043 20.3 0.6 2.4 2 1 0 2 2 2 1 Helix-turn-helix domain Exo_endo_phos PF03372.23 gi|336253646|ref|YP_004596753.1| - 0.028 13.9 0.0 0.031 13.8 0.0 1.1 1 0 0 1 1 1 0 Endonuclease/Exonuclease/phosphatase family HTH_10 PF04967.12 gi|336253647|ref|YP_004596754.1| - 1.8e-14 53.3 0.0 2.8e-14 52.6 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|336253647|ref|YP_004596754.1| - 2.9e-09 37.0 2.4 4.3e-09 36.4 2.4 1.2 1 0 0 1 1 1 1 GAF and HTH_10 associated domain ABC2_membrane_2 PF12679.7 gi|336253648|ref|YP_004596755.1| - 5.2e-14 52.2 16.8 1e-13 51.2 16.8 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|336253648|ref|YP_004596755.1| - 1.1e-06 28.1 6.7 1.1e-06 28.1 6.7 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|336253648|ref|YP_004596755.1| - 3.4e-05 23.5 4.9 3.4e-05 23.5 4.9 1.9 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|336253648|ref|YP_004596755.1| - 0.054 12.9 12.5 0.009 15.5 8.5 1.7 1 1 0 1 1 1 0 ABC-2 type transporter ABC2_membrane_4 PF12730.7 gi|336253648|ref|YP_004596755.1| - 2.3 8.2 11.0 1 9.3 8.0 2.0 2 1 0 2 2 2 0 ABC-2 family transporter protein ABC_tran PF00005.27 gi|336253649|ref|YP_004596756.1| - 3.6e-22 79.4 0.0 4.9e-22 78.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|336253649|ref|YP_004596756.1| - 1.6e-13 51.2 1.6 7.7e-10 39.1 0.1 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 gi|336253649|ref|YP_004596756.1| - 0.074 12.9 0.0 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_23 PF13476.6 gi|336253649|ref|YP_004596756.1| - 0.24 11.9 0.1 0.45 11.0 0.1 1.4 1 0 0 1 1 1 0 AAA domain Methyltransf_25 PF13649.6 gi|336253650|ref|YP_004596757.1| - 5.2e-17 62.3 0.5 4.1e-16 59.5 0.1 2.4 2 1 1 3 3 3 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|336253650|ref|YP_004596757.1| - 1.2e-16 61.2 0.1 3.1e-16 59.8 0.1 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|336253650|ref|YP_004596757.1| - 1.2e-15 57.6 0.0 1.8e-15 57.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|336253650|ref|YP_004596757.1| - 4.7e-11 42.8 0.0 9.1e-11 41.9 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|336253650|ref|YP_004596757.1| - 3.6e-10 40.5 0.1 1.6e-09 38.4 0.0 2.0 1 1 1 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|336253650|ref|YP_004596757.1| - 1.4e-07 31.1 0.0 2.6e-07 30.2 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MetW PF07021.12 gi|336253650|ref|YP_004596757.1| - 1.1e-06 28.3 0.0 2.3e-06 27.4 0.0 1.4 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW MTS PF05175.14 gi|336253650|ref|YP_004596757.1| - 3.3e-05 23.5 0.0 6.9e-05 22.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase small domain PCMT PF01135.19 gi|336253650|ref|YP_004596757.1| - 5.3e-05 23.1 0.0 9.9e-05 22.2 0.0 1.4 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_32 PF13679.6 gi|336253650|ref|YP_004596757.1| - 0.00046 20.2 0.0 0.00087 19.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.19 gi|336253650|ref|YP_004596757.1| - 0.0027 17.9 0.0 0.0038 17.3 0.0 1.3 1 0 0 1 1 1 1 FtsJ-like methyltransferase PrmA PF06325.13 gi|336253650|ref|YP_004596757.1| - 0.0028 17.1 0.1 0.0041 16.5 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) CMAS PF02353.20 gi|336253650|ref|YP_004596757.1| - 0.031 13.6 0.0 0.049 12.9 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_29 PF03141.16 gi|336253650|ref|YP_004596757.1| - 0.17 10.4 0.1 0.23 10.0 0.1 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase RrnaAD PF00398.20 gi|336253650|ref|YP_004596757.1| - 0.27 10.3 0.0 0.89 8.6 0.0 1.7 2 0 0 2 2 2 0 Ribosomal RNA adenine dimethylase AP_endonuc_2 PF01261.24 gi|336253651|ref|YP_004596758.1| - 9e-27 93.9 1.6 2.3e-26 92.5 0.6 2.0 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel BPL_LplA_LipB PF03099.19 gi|336253652|ref|YP_004596759.1| - 1.3e-05 25.1 0.0 4.9e-05 23.2 0.0 2.0 2 1 0 2 2 2 1 Biotin/lipoate A/B protein ligase family Epimerase PF01370.21 gi|336253654|ref|YP_004596761.1| - 2.2e-21 76.4 0.1 2.8e-19 69.5 0.1 2.4 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 gi|336253654|ref|YP_004596761.1| - 6.4e-11 41.9 0.8 0.00016 20.9 0.0 3.0 2 1 0 2 2 2 2 RmlD substrate binding domain NAD_binding_10 PF13460.6 gi|336253654|ref|YP_004596761.1| - 7.6e-09 35.7 0.1 5.9e-08 32.8 0.1 2.2 1 1 0 1 1 1 1 NAD(P)H-binding GDP_Man_Dehyd PF16363.5 gi|336253654|ref|YP_004596761.1| - 2.9e-08 33.5 0.1 0.0023 17.4 0.1 2.9 2 2 0 2 2 2 2 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|336253654|ref|YP_004596761.1| - 4.2e-06 26.0 0.0 0.00016 20.8 0.0 2.1 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NmrA PF05368.13 gi|336253654|ref|YP_004596761.1| - 0.00015 21.4 0.0 0.0006 19.4 0.0 2.0 3 0 0 3 3 3 1 NmrA-like family Glyco_transf_4 PF13439.6 gi|336253654|ref|YP_004596761.1| - 0.003 17.6 0.6 0.038 14.0 0.1 2.6 3 1 0 3 3 3 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|336253654|ref|YP_004596761.1| - 0.0079 16.7 2.0 0.051 14.0 0.6 2.6 2 2 1 3 3 3 1 Glycosyl transferase 4-like domain AP_endonuc_2 PF01261.24 gi|336253655|ref|YP_004596762.1| - 1.9e-18 66.7 1.7 3.6e-18 65.8 1.5 1.6 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel UxuA PF03786.13 gi|336253655|ref|YP_004596762.1| - 0.00024 20.1 0.0 0.00036 19.5 0.0 1.2 1 0 0 1 1 1 1 D-mannonate dehydratase (UxuA) AvrPtoB_bdg PF16847.5 gi|336253655|ref|YP_004596762.1| - 0.027 14.9 0.7 12 6.5 0.0 3.0 2 1 1 3 3 3 0 Avirulence AvrPtoB, BAK1-binding domain HEAT_2 PF13646.6 gi|336253656|ref|YP_004596763.1| - 3.5e-20 72.2 16.3 1.8e-10 41.1 3.2 4.1 1 1 3 4 4 4 4 HEAT repeats HEAT_EZ PF13513.6 gi|336253656|ref|YP_004596763.1| - 1.2e-10 41.6 10.3 0.15 12.6 0.1 5.7 3 2 3 6 6 5 4 HEAT-like repeat HEAT PF02985.22 gi|336253656|ref|YP_004596763.1| - 4.5e-08 32.7 6.6 0.66 10.4 0.1 5.7 5 0 0 5 5 5 1 HEAT repeat Cnd1 PF12717.7 gi|336253656|ref|YP_004596763.1| - 2.1e-07 31.1 0.0 2.5e-05 24.4 0.0 2.6 1 1 1 3 3 3 1 non-SMC mitotic condensation complex subunit 1 zinc_ribbon_2 PF13240.6 gi|336253656|ref|YP_004596763.1| - 2.5e-05 23.8 3.0 4.8e-05 22.9 3.0 1.5 1 0 0 1 1 1 1 zinc-ribbon domain CLASP_N PF12348.8 gi|336253656|ref|YP_004596763.1| - 0.002 17.8 0.0 1.1 8.7 0.0 2.5 2 1 1 3 3 3 2 CLASP N terminal Adaptin_N PF01602.20 gi|336253656|ref|YP_004596763.1| - 0.0045 15.6 0.0 0.039 12.5 0.0 2.0 1 1 1 2 2 2 1 Adaptin N terminal region RTP1_C1 PF10363.9 gi|336253656|ref|YP_004596763.1| - 0.011 16.0 0.0 0.037 14.2 0.0 2.0 2 1 0 2 2 2 0 Required for nuclear transport of RNA pol II C-terminus 1 DZR PF12773.7 gi|336253656|ref|YP_004596763.1| - 0.012 15.6 0.9 0.024 14.6 0.9 1.5 1 0 0 1 1 1 0 Double zinc ribbon Prok-RING_1 PF14446.6 gi|336253656|ref|YP_004596763.1| - 0.21 11.5 1.5 0.4 10.6 1.5 1.4 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zf-ribbon_3 PF13248.6 gi|336253656|ref|YP_004596763.1| - 0.29 10.6 5.7 0.85 9.1 5.7 1.7 1 1 0 1 1 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|336253656|ref|YP_004596763.1| - 3.3 7.9 7.9 9.4 6.5 0.8 2.6 1 1 1 2 2 2 0 Zinc ribbon domain zinc_ribbon_9 PF14369.6 gi|336253656|ref|YP_004596763.1| - 8.1 6.8 8.7 11 6.4 1.7 2.8 1 1 1 2 2 2 0 zinc-ribbon Peripla_BP_2 PF01497.18 gi|336253658|ref|YP_004596765.1| - 1.3e-16 60.9 0.0 2e-16 60.3 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein TAT_signal PF10518.9 gi|336253658|ref|YP_004596765.1| - 0.0019 18.0 1.3 0.0031 17.3 1.3 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence RIO1 PF01163.22 gi|336253659|ref|YP_004596766.1| - 1.4e-45 155.2 0.2 2e-45 154.7 0.2 1.1 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.11 gi|336253659|ref|YP_004596766.1| - 3.1e-28 97.8 0.1 6.2e-28 96.9 0.1 1.5 1 0 0 1 1 1 1 Rio2, N-terminal APH PF01636.23 gi|336253659|ref|YP_004596766.1| - 6.6e-05 23.0 1.2 0.011 15.7 1.1 2.9 1 1 0 1 1 1 1 Phosphotransferase enzyme family Pkinase PF00069.25 gi|336253659|ref|YP_004596766.1| - 0.0051 16.2 0.1 0.0088 15.4 0.1 1.4 1 1 0 1 1 1 1 Protein kinase domain WaaY PF06176.11 gi|336253659|ref|YP_004596766.1| - 0.11 12.1 0.0 0.18 11.4 0.0 1.2 1 0 0 1 1 1 0 Lipopolysaccharide core biosynthesis protein (WaaY) Peripla_BP_2 PF01497.18 gi|336253660|ref|YP_004596767.1| - 2.3e-22 79.8 0.0 3.9e-22 79.0 0.0 1.3 1 1 0 1 1 1 1 Periplasmic binding protein Ribosomal_L15e PF00827.17 gi|336253661|ref|YP_004596768.1| - 9.3e-83 276.6 6.0 1.1e-82 276.4 6.0 1.0 1 0 0 1 1 1 1 Ribosomal L15 YjbF PF11102.8 gi|336253661|ref|YP_004596768.1| - 0.12 12.1 0.3 0.85 9.4 0.3 2.0 1 1 0 1 1 1 0 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF Usp PF00582.26 gi|336253662|ref|YP_004596769.1| - 2.6e-34 118.7 0.4 3e-34 118.6 0.4 1.0 1 0 0 1 1 1 1 Universal stress protein family AA_permease_N PF08403.10 gi|336253662|ref|YP_004596769.1| - 0.13 11.8 0.0 0.21 11.1 0.0 1.3 1 0 0 1 1 1 0 Amino acid permease N-terminal Pribosyltran PF00156.27 gi|336253663|ref|YP_004596770.1| - 9.5e-11 41.5 0.2 1.5e-10 40.9 0.2 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain HTH_3 PF01381.22 gi|336253663|ref|YP_004596770.1| - 0.00075 19.5 0.0 0.0025 17.8 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix HTH_IclR PF09339.10 gi|336253663|ref|YP_004596770.1| - 0.064 13.1 0.0 0.18 11.6 0.0 1.8 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF4992 PF16383.5 gi|336253663|ref|YP_004596770.1| - 0.12 11.9 0.0 16 5.0 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function HTH_10 PF04967.12 gi|336253664|ref|YP_004596771.1| - 7e-15 54.6 0.1 1.1e-14 54.0 0.1 1.3 1 0 0 1 1 1 1 HTH DNA binding domain VWA_3 PF13768.6 gi|336253664|ref|YP_004596771.1| - 0.019 14.9 0.0 0.069 13.1 0.0 1.7 1 1 1 2 2 2 0 von Willebrand factor type A domain PEMT PF04191.13 gi|336253665|ref|YP_004596772.1| - 1.8e-17 63.7 0.2 1.8e-17 63.7 0.2 2.3 3 0 0 3 3 3 1 Phospholipid methyltransferase ICMT PF04140.14 gi|336253665|ref|YP_004596772.1| - 5e-05 23.6 0.1 0.0001 22.6 0.1 1.4 1 0 0 1 1 1 1 Isoprenylcysteine carboxyl methyltransferase (ICMT) family ERG4_ERG24 PF01222.17 gi|336253665|ref|YP_004596772.1| - 9.2e-05 21.4 0.1 0.00015 20.7 0.1 1.2 1 0 0 1 1 1 1 Ergosterol biosynthesis ERG4/ERG24 family Steroid_dh PF02544.16 gi|336253665|ref|YP_004596772.1| - 0.0004 20.4 0.0 0.00055 20.0 0.0 1.3 1 0 0 1 1 1 1 3-oxo-5-alpha-steroid 4-dehydrogenase DUF1295 PF06966.12 gi|336253665|ref|YP_004596772.1| - 0.00055 19.5 0.4 0.00069 19.2 0.4 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1295) Zincin_2 PF10103.9 gi|336253665|ref|YP_004596772.1| - 0.13 11.5 0.1 9.1 5.4 0.0 2.1 2 0 0 2 2 2 0 Zincin-like metallopeptidase EzrA PF06160.12 gi|336253666|ref|YP_004596773.1| - 0.083 11.1 0.1 0.63 8.2 0.0 2.4 2 0 0 2 2 2 0 Septation ring formation regulator, EzrA Fez1 PF06818.15 gi|336253666|ref|YP_004596773.1| - 3 8.2 6.7 7.9 6.9 6.0 2.1 1 1 0 1 1 1 0 Fez1 tRNA-synt_2b PF00587.25 gi|336253667|ref|YP_004596774.1| - 4.2e-32 111.5 0.0 8.4e-32 110.6 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|336253667|ref|YP_004596774.1| - 2.8e-16 59.4 0.6 2.8e-16 59.4 0.6 2.4 3 0 0 3 3 3 1 Anticodon binding domain tRNA_SAD PF07973.14 gi|336253667|ref|YP_004596774.1| - 1.9e-13 50.3 0.0 3.5e-13 49.4 0.0 1.5 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain TGS PF02824.21 gi|336253667|ref|YP_004596774.1| - 1.2e-12 47.6 0.1 2.5e-12 46.6 0.1 1.6 1 0 0 1 1 1 1 TGS domain HGTP_anticodon2 PF12745.7 gi|336253667|ref|YP_004596774.1| - 0.089 12.3 0.9 0.16 11.5 0.9 1.3 1 0 0 1 1 1 0 Anticodon binding domain of tRNAs tRNA-synt_His PF13393.6 gi|336253667|ref|YP_004596774.1| - 0.091 12.0 0.0 0.21 10.8 0.0 1.6 2 0 0 2 2 2 0 Histidyl-tRNA synthetase HAD_2 PF13419.6 gi|336253668|ref|YP_004596775.1| - 2.1e-25 89.9 0.0 3.1e-25 89.3 0.0 1.3 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|336253668|ref|YP_004596775.1| - 2.9e-15 57.1 0.1 5.6e-15 56.2 0.1 1.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|336253668|ref|YP_004596775.1| - 1.6e-12 47.3 0.1 6.4e-12 45.4 0.1 1.9 2 0 0 2 2 2 1 HAD-hyrolase-like Hydrolase_6 PF13344.6 gi|336253668|ref|YP_004596775.1| - 0.0028 17.8 0.0 0.01 15.9 0.0 1.8 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Acid_PPase PF12689.7 gi|336253668|ref|YP_004596775.1| - 0.0041 17.0 0.0 1.5 8.6 0.0 2.2 2 0 0 2 2 2 2 Acid Phosphatase HAD PF12710.7 gi|336253668|ref|YP_004596775.1| - 0.008 16.6 1.0 0.074 13.4 1.0 2.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Acid_phosphat_B PF03767.14 gi|336253668|ref|YP_004596775.1| - 0.018 14.6 0.0 1.4 8.5 0.0 2.2 2 0 0 2 2 2 0 HAD superfamily, subfamily IIIB (Acid phosphatase) Aldolase_II PF00596.21 gi|336253669|ref|YP_004596776.1| - 1.7e-42 145.5 0.2 2e-42 145.2 0.2 1.0 1 0 0 1 1 1 1 Class II Aldolase and Adducin N-terminal domain NUDIX PF00293.28 gi|336253670|ref|YP_004596777.1| - 1.3e-17 64.0 0.2 1.8e-17 63.6 0.2 1.1 1 0 0 1 1 1 1 NUDIX domain Pribosyltran PF00156.27 gi|336253671|ref|YP_004596778.1| - 7e-16 58.1 1.3 1e-15 57.6 1.3 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|336253671|ref|YP_004596778.1| - 0.00049 19.6 0.0 0.00061 19.3 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.6 gi|336253671|ref|YP_004596778.1| - 0.019 14.5 0.2 0.028 13.9 0.2 1.3 1 0 0 1 1 1 0 Phosphoribosyl transferase Abhydrolase_3 PF07859.13 gi|336253672|ref|YP_004596779.1| - 1.3e-75 253.8 0.3 1.7e-75 253.5 0.3 1.1 1 0 0 1 1 1 1 alpha/beta hydrolase fold COesterase PF00135.28 gi|336253672|ref|YP_004596779.1| - 1.1e-07 31.2 0.0 3.6e-07 29.4 0.0 1.6 1 1 0 1 1 1 1 Carboxylesterase family Abhydrolase_6 PF12697.7 gi|336253672|ref|YP_004596779.1| - 0.0011 19.6 10.0 0.002 18.8 10.0 1.4 1 0 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S9 PF00326.21 gi|336253672|ref|YP_004596779.1| - 0.0017 17.9 0.0 0.028 13.9 0.0 2.1 2 0 0 2 2 2 1 Prolyl oligopeptidase family Say1_Mug180 PF10340.9 gi|336253672|ref|YP_004596779.1| - 0.011 14.7 0.0 0.016 14.1 0.0 1.1 1 0 0 1 1 1 0 Steryl acetyl hydrolase DLH PF01738.18 gi|336253672|ref|YP_004596779.1| - 0.055 13.0 0.0 1.6 8.2 0.0 2.7 3 0 0 3 3 3 0 Dienelactone hydrolase family AXE1 PF05448.12 gi|336253672|ref|YP_004596779.1| - 0.084 11.5 0.1 0.31 9.7 0.0 1.8 1 1 1 2 2 2 0 Acetyl xylan esterase (AXE1) Chlorophyllase2 PF12740.7 gi|336253672|ref|YP_004596779.1| - 0.085 11.7 0.0 0.14 11.0 0.0 1.3 1 0 0 1 1 1 0 Chlorophyllase enzyme CarS-like PF01864.17 gi|336253673|ref|YP_004596780.1| - 5.5e-47 160.0 0.6 6.7e-47 159.7 0.6 1.0 1 0 0 1 1 1 1 CDP-archaeol synthase CTP_transf_1 PF01148.20 gi|336253673|ref|YP_004596780.1| - 1.9e-06 27.8 0.7 1.9e-06 27.8 0.7 1.6 1 1 0 1 1 1 1 Cytidylyltransferase family Gly-zipper_YMGG PF13441.6 gi|336253673|ref|YP_004596780.1| - 0.31 10.8 7.8 2.6 7.9 0.7 2.4 2 0 0 2 2 2 0 YMGG-like Gly-zipper Pro_dh PF01619.18 gi|336253674|ref|YP_004596781.1| - 2.1e-24 86.6 0.0 3.7e-24 85.8 0.0 1.4 1 1 0 1 1 1 1 Proline dehydrogenase PqqD PF05402.12 gi|336253674|ref|YP_004596781.1| - 0.15 12.4 0.7 1.1 9.6 0.0 2.7 3 0 0 3 3 3 0 Coenzyme PQQ synthesis protein D (PqqD) DUF502 PF04367.13 gi|336253675|ref|YP_004596782.1| - 5.4e-19 68.0 0.2 8.7e-19 67.4 0.2 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF502) DoxX PF07681.12 gi|336253676|ref|YP_004596783.1| - 1.4e-05 25.6 0.4 2.1e-05 25.0 0.4 1.3 1 0 0 1 1 1 1 DoxX HR_lesion PF05514.11 gi|336253676|ref|YP_004596783.1| - 2.7e-05 24.4 0.0 0.00059 20.0 0.0 2.0 1 1 0 2 2 2 1 HR-like lesion-inducing Aminotran_4 PF01063.19 gi|336253677|ref|YP_004596784.1| - 1.8e-49 168.6 0.0 2.2e-49 168.4 0.0 1.1 1 0 0 1 1 1 1 Amino-transferase class IV HTH_24 PF13412.6 gi|336253678|ref|YP_004596785.1| - 1.5e-11 43.7 0.0 4.5e-06 26.1 0.0 2.2 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|336253678|ref|YP_004596785.1| - 3.1e-11 43.2 1.0 1.2e-07 31.7 0.2 2.2 2 0 0 2 2 2 2 Helix-turn-helix domain MarR_2 PF12802.7 gi|336253678|ref|YP_004596785.1| - 3.6e-08 33.2 0.8 1.7e-05 24.6 0.2 2.4 2 0 0 2 2 2 2 MarR family HTH_5 PF01022.20 gi|336253678|ref|YP_004596785.1| - 4e-07 29.8 0.0 1.9e-05 24.4 0.0 2.3 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|336253678|ref|YP_004596785.1| - 0.00025 20.9 0.0 0.0015 18.4 0.0 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.6 gi|336253678|ref|YP_004596785.1| - 0.00081 19.8 0.1 0.0033 17.9 0.1 2.0 2 0 0 2 2 2 1 Winged helix DNA-binding domain MarR PF01047.22 gi|336253678|ref|YP_004596785.1| - 0.0025 17.7 0.0 0.016 15.1 0.0 2.1 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.10 gi|336253678|ref|YP_004596785.1| - 0.003 17.3 0.0 0.0072 16.1 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain RusA PF05866.11 gi|336253678|ref|YP_004596785.1| - 0.0076 16.8 0.0 1.1 9.9 0.0 2.2 2 0 0 2 2 2 1 Endodeoxyribonuclease RusA RP-C PF03428.13 gi|336253678|ref|YP_004596785.1| - 0.011 15.4 0.0 0.2 11.3 0.0 2.2 2 0 0 2 2 2 0 Replication protein C N-terminal domain Penicillinase_R PF03965.16 gi|336253678|ref|YP_004596785.1| - 0.012 16.0 0.0 1.2 9.5 0.0 2.2 1 1 0 2 2 2 0 Penicillinase repressor HTH_30 PF13556.6 gi|336253678|ref|YP_004596785.1| - 0.015 15.1 0.1 0.041 13.7 0.1 1.8 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain HTH_10 PF04967.12 gi|336253678|ref|YP_004596785.1| - 0.018 14.9 0.0 0.055 13.3 0.0 1.8 2 0 0 2 2 2 0 HTH DNA binding domain GPP34 PF05719.11 gi|336253678|ref|YP_004596785.1| - 0.06 13.4 1.0 0.28 11.2 0.2 1.9 1 1 1 2 2 2 0 Golgi phosphoprotein 3 (GPP34) HTH_34 PF13601.6 gi|336253678|ref|YP_004596785.1| - 0.12 12.6 0.0 0.82 9.9 0.0 1.9 2 0 0 2 2 2 0 Winged helix DNA-binding domain BLACT_WH PF17778.1 gi|336253678|ref|YP_004596785.1| - 0.14 12.1 0.0 1.1 9.3 0.0 2.2 2 0 0 2 2 2 0 Beta-lactamase associated winged helix domain RPA_C PF08784.11 gi|336253678|ref|YP_004596785.1| - 0.17 12.5 0.0 0.64 10.7 0.0 1.8 2 0 0 2 2 2 0 Replication protein A C terminal 7TMR-DISM_7TM PF07695.11 gi|336253679|ref|YP_004596786.1| - 0.04 13.8 4.7 0.048 13.6 4.7 1.1 1 0 0 1 1 1 0 7TM diverse intracellular signalling ABC2_membrane_4 PF12730.7 gi|336253679|ref|YP_004596786.1| - 0.063 13.2 3.1 0.08 12.9 3.1 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF3481 PF11980.8 gi|336253679|ref|YP_004596786.1| - 0.079 12.7 4.3 0.27 11.0 2.2 2.3 2 1 1 3 3 3 0 C-terminal domain of neuropilin glycoprotein SUR7 PF06687.12 gi|336253679|ref|YP_004596786.1| - 0.14 11.8 3.4 0.16 11.5 3.4 1.2 1 0 0 1 1 1 0 SUR7/PalI family TctB PF07331.11 gi|336253679|ref|YP_004596786.1| - 0.17 12.2 5.4 0.25 11.6 5.4 1.3 1 0 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family DUF2530 PF10745.9 gi|336253679|ref|YP_004596786.1| - 0.45 10.8 6.6 0.34 11.2 4.1 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF2530) DHBP_synthase PF00926.19 gi|336253680|ref|YP_004596787.1| - 1.1e-58 197.9 0.1 1.3e-58 197.7 0.1 1.1 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase CTP-dep_RFKase PF01982.16 gi|336253681|ref|YP_004596788.1| - 4.1e-48 162.5 0.0 6.2e-48 161.9 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF120 HTH_20 PF12840.7 gi|336253681|ref|YP_004596788.1| - 1.4e-07 31.4 1.3 2.4e-07 30.7 1.3 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|336253681|ref|YP_004596788.1| - 1.6e-05 24.4 0.2 2.7e-05 23.6 0.2 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|336253681|ref|YP_004596788.1| - 2.9e-05 23.9 0.5 6e-05 22.9 0.5 1.5 1 0 0 1 1 1 1 MarR family HTH_AsnC-type PF13404.6 gi|336253681|ref|YP_004596788.1| - 9.1e-05 22.2 0.7 9.1e-05 22.2 0.7 2.0 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|336253681|ref|YP_004596788.1| - 0.00053 19.9 0.1 0.0011 18.9 0.1 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR PF01047.22 gi|336253681|ref|YP_004596788.1| - 0.0011 18.9 0.1 0.0025 17.7 0.1 1.6 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|336253681|ref|YP_004596788.1| - 0.0016 18.3 0.1 0.0028 17.6 0.1 1.4 1 0 0 1 1 1 1 HTH domain Fe_dep_repress PF01325.19 gi|336253681|ref|YP_004596788.1| - 0.0025 18.0 0.0 0.0056 16.9 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.6 gi|336253681|ref|YP_004596788.1| - 0.0031 18.0 0.1 0.0049 17.3 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_DeoR PF08220.12 gi|336253681|ref|YP_004596788.1| - 0.011 15.4 0.1 0.02 14.6 0.1 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_1 PF00126.27 gi|336253681|ref|YP_004596788.1| - 0.017 15.0 0.1 0.037 14.0 0.1 1.6 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_IclR PF09339.10 gi|336253681|ref|YP_004596788.1| - 0.093 12.6 0.9 0.15 11.9 0.9 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain GntR PF00392.21 gi|336253681|ref|YP_004596788.1| - 0.17 11.5 0.4 0.33 10.6 0.4 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family DUF4423 PF14394.6 gi|336253681|ref|YP_004596788.1| - 0.21 11.3 0.0 0.3 10.8 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) MarR PF01047.22 gi|336253683|ref|YP_004596790.1| - 4.3e-08 33.0 0.0 9.5e-08 31.9 0.0 1.6 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|336253683|ref|YP_004596790.1| - 6.1e-07 29.2 0.0 1.1e-06 28.4 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|336253683|ref|YP_004596790.1| - 7.2e-07 29.0 0.4 4.3e-06 26.5 0.2 2.2 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.6 gi|336253683|ref|YP_004596790.1| - 1.6e-06 27.6 0.0 2.6e-06 26.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|336253683|ref|YP_004596790.1| - 2.1e-06 27.5 0.0 4.5e-06 26.4 0.0 1.6 2 0 0 2 2 1 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|336253683|ref|YP_004596790.1| - 1.4e-05 24.8 0.3 8.3e-05 22.3 0.1 2.1 2 0 0 2 2 2 1 IclR helix-turn-helix domain GntR PF00392.21 gi|336253683|ref|YP_004596790.1| - 2.2e-05 24.0 0.1 4.9e-05 22.9 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family DUF1724 PF08350.10 gi|336253683|ref|YP_004596790.1| - 0.0005 20.2 0.0 0.00081 19.5 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_11 PF08279.12 gi|336253683|ref|YP_004596790.1| - 0.00085 19.2 0.0 0.0019 18.1 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.7 gi|336253683|ref|YP_004596790.1| - 0.0013 18.8 0.3 0.0025 17.8 0.3 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.6 gi|336253683|ref|YP_004596790.1| - 0.0019 18.7 0.0 0.0035 17.8 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 gi|336253683|ref|YP_004596790.1| - 0.0024 17.8 0.1 0.0046 16.9 0.1 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Penicillinase_R PF03965.16 gi|336253683|ref|YP_004596790.1| - 0.0035 17.7 0.0 0.006 16.9 0.0 1.4 1 0 0 1 1 1 1 Penicillinase repressor HTH_34 PF13601.6 gi|336253683|ref|YP_004596790.1| - 0.013 15.6 0.0 0.021 15.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain Fe_dep_repress PF01325.19 gi|336253683|ref|YP_004596790.1| - 0.031 14.5 0.0 0.069 13.4 0.0 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Ribosomal_S19e PF01090.19 gi|336253683|ref|YP_004596790.1| - 0.07 12.8 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein S19e HTH_36 PF13730.6 gi|336253683|ref|YP_004596790.1| - 0.12 12.4 0.0 0.2 11.6 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|336253683|ref|YP_004596790.1| - 0.12 12.1 0.0 0.21 11.4 0.0 1.3 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain RepL PF05732.11 gi|336253683|ref|YP_004596790.1| - 0.28 10.6 0.0 0.44 9.9 0.0 1.2 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) HTH_20 PF12840.7 gi|336253684|ref|YP_004596791.1| - 0.025 14.6 0.7 0.22 11.6 0.7 2.3 1 1 0 1 1 1 0 Helix-turn-helix domain Wyosine_form PF08608.12 gi|336253685|ref|YP_004596792.1| - 3.4e-20 72.2 0.1 2.3e-19 69.5 0.0 2.3 2 0 0 2 2 2 1 Wyosine base formation Radical_SAM PF04055.21 gi|336253685|ref|YP_004596792.1| - 1e-19 71.5 1.3 3.5e-19 69.8 1.3 1.8 1 1 0 1 1 1 1 Radical SAM superfamily DUF4831 PF16115.5 gi|336253686|ref|YP_004596793.1| - 0.0041 16.2 0.5 2.3 7.2 0.0 2.6 1 1 2 3 3 3 2 Domain of unknown function (DUF4831) DUF3370 PF11850.8 gi|336253686|ref|YP_004596793.1| - 0.017 14.1 5.7 1.4 7.7 0.1 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF3370) CXCR4_N PF12109.8 gi|336253686|ref|YP_004596793.1| - 1.2 9.4 8.5 33 4.8 0.4 3.5 3 0 0 3 3 3 0 CXCR4 Chemokine receptor N terminal Phycoerythr_ab PF02972.14 gi|336253686|ref|YP_004596793.1| - 1.6 8.6 4.5 30 4.5 0.2 3.0 3 0 0 3 3 3 0 Phycoerythrin, alpha/beta chain HTH_20 PF12840.7 gi|336253687|ref|YP_004596794.1| - 1e-06 28.7 0.1 3.1e-06 27.2 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|336253687|ref|YP_004596794.1| - 3.9e-05 23.5 0.0 8e-05 22.5 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|336253687|ref|YP_004596794.1| - 0.00013 21.8 0.1 0.00025 20.8 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_DeoR PF08220.12 gi|336253687|ref|YP_004596794.1| - 0.0047 16.6 0.5 0.0088 15.8 0.5 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_34 PF13601.6 gi|336253687|ref|YP_004596794.1| - 0.0054 16.9 0.0 0.0096 16.1 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain GntR PF00392.21 gi|336253687|ref|YP_004596794.1| - 0.0054 16.4 0.2 0.013 15.1 0.2 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HxlR PF01638.17 gi|336253687|ref|YP_004596794.1| - 0.016 15.0 0.2 0.04 13.8 0.2 1.6 1 1 0 1 1 1 0 HxlR-like helix-turn-helix HTH_5 PF01022.20 gi|336253687|ref|YP_004596794.1| - 0.03 14.2 0.1 0.056 13.3 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|336253687|ref|YP_004596794.1| - 0.033 14.1 0.3 0.065 13.2 0.3 1.5 1 0 0 1 1 1 0 HTH domain HTH_27 PF13463.6 gi|336253687|ref|YP_004596794.1| - 0.12 12.9 0.1 0.28 11.7 0.1 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_24 PF13412.6 gi|336253687|ref|YP_004596794.1| - 0.17 11.5 0.1 1.3 8.7 0.1 2.2 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Ribosomal_L12_N PF16320.5 gi|336253687|ref|YP_004596794.1| - 0.2 11.4 2.1 37 4.1 0.0 3.3 3 0 0 3 3 3 0 Ribosomal protein L7/L12 dimerisation domain DUF1772 PF08592.11 gi|336253688|ref|YP_004596795.1| - 0.029 14.7 0.1 0.034 14.5 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1772) HIG_1_N PF04588.13 gi|336253688|ref|YP_004596795.1| - 2.7 8.3 5.4 0.46 10.8 0.5 2.0 1 1 1 2 2 2 0 Hypoxia induced protein conserved region Fe-ADH PF00465.19 gi|336253689|ref|YP_004596796.1| - 9.2e-118 393.2 4.8 1e-117 393.0 4.8 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.6 gi|336253689|ref|YP_004596796.1| - 2.8e-16 60.0 2.8 5.5e-12 45.9 0.4 2.1 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase Peripla_BP_6 PF13458.6 gi|336253689|ref|YP_004596796.1| - 0.0025 17.5 0.6 0.0048 16.6 0.6 1.5 1 0 0 1 1 1 1 Periplasmic binding protein Borrelia_P83 PF05262.11 gi|336253689|ref|YP_004596796.1| - 0.12 10.9 0.0 0.21 10.0 0.0 1.3 1 0 0 1 1 1 0 Borrelia P83/100 protein Putative_PNPOx PF01243.20 gi|336253691|ref|YP_004596798.1| - 0.006 16.8 0.0 0.0087 16.2 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Hydrolase_3 PF08282.12 gi|336253692|ref|YP_004596799.1| - 7.6e-24 84.8 0.0 1.5e-16 60.9 0.1 2.0 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|336253692|ref|YP_004596799.1| - 4.2e-08 33.7 0.4 4.3e-07 30.4 0.1 2.3 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|336253692|ref|YP_004596799.1| - 8.3e-06 25.5 0.0 0.00016 21.3 0.1 2.0 2 0 0 2 2 2 1 Sucrose-6F-phosphate phosphohydrolase HAD PF12710.7 gi|336253692|ref|YP_004596799.1| - 4.9e-05 23.8 4.4 0.036 14.5 0.1 3.2 2 1 1 3 3 3 2 haloacid dehalogenase-like hydrolase SBP_bac_8 PF13416.6 gi|336253693|ref|YP_004596800.1| - 8.7e-43 147.1 1.6 1.1e-42 146.8 1.6 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|336253693|ref|YP_004596800.1| - 1.4e-32 114.0 2.8 1.7e-32 113.7 2.8 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein LGFP PF08310.11 gi|336253693|ref|YP_004596800.1| - 0.0061 17.1 0.0 0.022 15.3 0.0 2.0 1 0 0 1 1 1 1 LGFP repeat SBP_bac_11 PF13531.6 gi|336253693|ref|YP_004596800.1| - 0.0069 16.1 0.0 0.09 12.5 0.0 2.6 3 0 0 3 3 3 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|336253693|ref|YP_004596800.1| - 0.03 13.7 0.0 0.48 9.8 0.0 2.2 2 0 0 2 2 2 0 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.22 gi|336253694|ref|YP_004596801.1| - 3.2e-17 62.9 11.8 3.2e-17 62.9 11.8 2.3 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SKG6 PF08693.10 gi|336253694|ref|YP_004596801.1| - 1 8.8 8.0 0.065 12.7 1.0 2.7 2 0 0 2 2 2 0 Transmembrane alpha-helix domain BPD_transp_1 PF00528.22 gi|336253695|ref|YP_004596802.1| - 5.3e-13 49.1 17.7 5.3e-13 49.1 17.7 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DDE_Tnp_IS66_C PF13817.6 gi|336253695|ref|YP_004596802.1| - 0.0066 16.6 0.0 0.013 15.7 0.0 1.5 1 0 0 1 1 1 1 IS66 C-terminal element UPF0182 PF03699.13 gi|336253695|ref|YP_004596802.1| - 0.13 10.4 3.8 0.13 10.3 3.8 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0182) ABC_tran PF00005.27 gi|336253696|ref|YP_004596803.1| - 1e-31 110.3 0.0 1.5e-31 109.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter OB_MalK PF17912.1 gi|336253696|ref|YP_004596803.1| - 2.1e-11 44.4 0.3 2.4e-10 41.1 0.2 2.8 2 0 0 2 2 2 1 MalK OB fold domain TOBE_2 PF08402.10 gi|336253696|ref|YP_004596803.1| - 2.9e-08 33.7 1.6 2e-07 31.1 0.5 2.8 2 1 0 2 2 2 1 TOBE domain AAA_21 PF13304.6 gi|336253696|ref|YP_004596803.1| - 5.7e-07 29.6 0.0 0.0086 15.9 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system CysA_C_terminal PF17850.1 gi|336253696|ref|YP_004596803.1| - 1.4e-06 28.7 3.2 0.00012 22.5 0.1 3.4 4 0 0 4 4 3 1 CysA C-terminal regulatory domain SMC_N PF02463.19 gi|336253696|ref|YP_004596803.1| - 3.2e-05 23.5 0.0 6.3e-05 22.5 0.0 1.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|336253696|ref|YP_004596803.1| - 0.00015 22.2 0.3 0.00039 20.8 0.3 1.7 1 1 0 1 1 1 1 AAA ATPase domain Rad17 PF03215.15 gi|336253696|ref|YP_004596803.1| - 0.00029 20.8 0.0 0.00044 20.2 0.0 1.2 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_22 PF13401.6 gi|336253696|ref|YP_004596803.1| - 0.0024 18.2 0.3 0.0045 17.3 0.3 1.6 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|336253696|ref|YP_004596803.1| - 0.028 14.3 0.0 0.052 13.5 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_23 PF13476.6 gi|336253696|ref|YP_004596803.1| - 0.037 14.5 0.0 0.067 13.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|336253696|ref|YP_004596803.1| - 0.053 13.3 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain CRISPR_Cse2 PF09485.10 gi|336253696|ref|YP_004596803.1| - 0.055 14.0 0.0 0.099 13.2 0.0 1.4 1 0 0 1 1 1 0 CRISPR-associated protein Cse2 (CRISPR_cse2) MMR_HSR1 PF01926.23 gi|336253696|ref|YP_004596803.1| - 0.061 13.4 0.0 0.16 12.1 0.0 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_27 PF13514.6 gi|336253696|ref|YP_004596803.1| - 0.15 11.6 0.0 0.32 10.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|336253696|ref|YP_004596803.1| - 0.17 12.0 0.3 0.42 10.8 0.3 1.8 1 1 0 1 1 1 0 AAA domain G-alpha PF00503.20 gi|336253696|ref|YP_004596803.1| - 0.29 10.2 0.0 0.36 9.9 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit GDPD PF03009.17 gi|336253697|ref|YP_004596804.1| - 1.4e-29 103.6 0.0 6.7e-19 68.6 0.0 2.0 2 0 0 2 2 2 2 Glycerophosphoryl diester phosphodiesterase family PAP2 PF01569.21 gi|336253698|ref|YP_004596805.1| - 0.01 15.6 0.5 0.01 15.6 0.5 2.3 2 1 0 2 2 2 0 PAP2 superfamily RTX PF02382.15 gi|336253698|ref|YP_004596805.1| - 0.042 13.5 2.0 0.082 12.6 2.0 1.4 1 0 0 1 1 1 0 N-terminal domain in RTX protein FGGY_N PF00370.21 gi|336253699|ref|YP_004596806.1| - 1.2e-80 270.6 0.0 1.6e-80 270.2 0.0 1.1 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.16 gi|336253699|ref|YP_004596806.1| - 9.6e-59 198.4 0.3 2.3e-58 197.2 0.2 1.6 2 0 0 2 2 2 1 FGGY family of carbohydrate kinases, C-terminal domain BcrAD_BadFG PF01869.20 gi|336253699|ref|YP_004596806.1| - 0.00037 20.1 0.1 0.0017 17.9 0.0 1.9 2 0 0 2 2 2 1 BadF/BadG/BcrA/BcrD ATPase family DAO PF01266.24 gi|336253700|ref|YP_004596807.1| - 4.4e-54 184.4 1.7 6.2e-54 183.9 1.7 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Fer2_BFD PF04324.15 gi|336253700|ref|YP_004596807.1| - 4.8e-11 42.8 3.6 4.8e-11 42.8 3.6 2.3 2 0 0 2 2 1 1 BFD-like [2Fe-2S] binding domain Pyr_redox_2 PF07992.14 gi|336253700|ref|YP_004596807.1| - 1e-07 31.5 0.2 8.7e-07 28.4 0.2 2.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|336253700|ref|YP_004596807.1| - 1.9e-07 30.5 3.0 9.1e-07 28.3 2.9 1.9 1 1 0 1 1 1 1 FAD binding domain FAD_binding_3 PF01494.19 gi|336253700|ref|YP_004596807.1| - 2.6e-07 30.2 6.5 3.1e-06 26.7 6.5 2.1 1 1 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.27 gi|336253700|ref|YP_004596807.1| - 0.00018 22.0 1.4 0.00081 19.9 0.5 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|336253700|ref|YP_004596807.1| - 0.0022 18.2 0.3 0.0078 16.4 0.3 2.0 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.6 gi|336253700|ref|YP_004596807.1| - 0.0059 15.9 0.3 0.01 15.1 0.0 1.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|336253700|ref|YP_004596807.1| - 0.013 15.4 0.2 0.021 14.7 0.2 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Lycopene_cycl PF05834.12 gi|336253700|ref|YP_004596807.1| - 0.014 14.5 0.9 0.039 13.0 0.2 2.0 2 0 0 2 2 2 0 Lycopene cyclase protein ApbA PF02558.16 gi|336253700|ref|YP_004596807.1| - 0.02 14.5 0.2 0.038 13.6 0.2 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA DAO_C PF16901.5 gi|336253700|ref|YP_004596807.1| - 0.035 14.0 0.0 0.071 13.0 0.0 1.6 1 0 0 1 1 1 0 C-terminal domain of alpha-glycerophosphate oxidase FAD_oxidored PF12831.7 gi|336253700|ref|YP_004596807.1| - 0.051 12.9 6.1 0.54 9.5 6.2 2.1 1 1 0 1 1 1 0 FAD dependent oxidoreductase GIDA PF01134.22 gi|336253700|ref|YP_004596807.1| - 0.056 12.5 0.4 0.092 11.8 0.4 1.3 1 0 0 1 1 1 0 Glucose inhibited division protein A YbjQ_1 PF01906.17 gi|336253700|ref|YP_004596807.1| - 0.062 13.9 0.0 0.16 12.6 0.0 1.6 1 0 0 1 1 1 0 Putative heavy-metal-binding DUF3606 PF12244.8 gi|336253700|ref|YP_004596807.1| - 0.071 13.1 0.0 0.25 11.3 0.0 2.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3606) Thi4 PF01946.17 gi|336253700|ref|YP_004596807.1| - 0.072 12.3 0.1 0.16 11.2 0.1 1.5 1 0 0 1 1 1 0 Thi4 family HI0933_like PF03486.14 gi|336253700|ref|YP_004596807.1| - 0.091 11.4 0.5 0.2 10.3 0.2 1.7 2 0 0 2 2 2 0 HI0933-like protein NAD_binding_7 PF13241.6 gi|336253700|ref|YP_004596807.1| - 0.15 12.5 0.0 0.29 11.6 0.0 1.6 1 0 0 1 1 1 0 Putative NAD(P)-binding FAD_binding_2 PF00890.24 gi|336253701|ref|YP_004596808.1| - 5.6e-37 127.8 3.1 6.6e-37 127.6 3.1 1.0 1 0 0 1 1 1 1 FAD binding domain GIDA PF01134.22 gi|336253701|ref|YP_004596808.1| - 8.9e-08 31.6 0.1 8.9e-08 31.6 0.1 2.1 3 0 0 3 3 3 1 Glucose inhibited division protein A Pyr_redox_2 PF07992.14 gi|336253701|ref|YP_004596808.1| - 1.7e-06 27.5 0.2 0.0003 20.1 0.0 2.7 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|336253701|ref|YP_004596808.1| - 2.5e-06 27.1 2.7 4.4e-06 26.3 2.0 1.7 2 0 0 2 2 2 1 FAD dependent oxidoreductase DAO PF01266.24 gi|336253701|ref|YP_004596808.1| - 1.6e-05 24.7 7.9 0.00011 21.9 7.9 2.1 1 1 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|336253701|ref|YP_004596808.1| - 1.9e-05 24.1 0.6 0.00014 21.2 0.6 2.0 2 0 0 2 2 2 1 FAD binding domain HI0933_like PF03486.14 gi|336253701|ref|YP_004596808.1| - 2.1e-05 23.4 0.3 2.1e-05 23.4 0.3 2.0 3 0 0 3 3 3 1 HI0933-like protein Pyr_redox PF00070.27 gi|336253701|ref|YP_004596808.1| - 8.5e-05 23.0 0.2 0.0041 17.6 0.3 2.6 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|336253701|ref|YP_004596808.1| - 0.0006 19.2 1.0 0.0011 18.3 1.0 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.18 gi|336253701|ref|YP_004596808.1| - 0.013 15.4 0.2 0.022 14.6 0.2 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Trp_halogenase PF04820.14 gi|336253701|ref|YP_004596808.1| - 0.077 11.8 0.3 0.077 11.8 0.3 1.4 2 0 0 2 2 2 0 Tryptophan halogenase Pyr_redox_3 PF13738.6 gi|336253701|ref|YP_004596808.1| - 0.11 11.7 0.2 0.24 10.6 0.2 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|336253701|ref|YP_004596808.1| - 0.52 10.6 5.4 0.13 12.5 0.8 2.4 3 0 0 3 3 3 0 NAD(P)-binding Rossmann-like domain CCG PF02754.16 gi|336253702|ref|YP_004596809.1| - 7e-23 80.7 0.9 3.7e-11 43.1 0.1 2.7 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.6 gi|336253702|ref|YP_004596809.1| - 1.8e-08 34.7 8.1 1.8e-08 34.7 8.1 3.0 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|336253702|ref|YP_004596809.1| - 4.9e-06 27.0 9.0 4.9e-06 27.0 9.0 3.0 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|336253702|ref|YP_004596809.1| - 0.013 15.7 16.7 0.019 15.1 12.9 3.1 3 1 1 4 4 4 0 4Fe-4S dicluster domain DDE_Tnp_ISAZ013 PF07592.11 gi|336253702|ref|YP_004596809.1| - 0.016 14.2 0.0 0.029 13.3 0.0 1.3 1 0 0 1 1 1 0 Rhodopirellula transposase DDE domain Fer4_10 PF13237.6 gi|336253702|ref|YP_004596809.1| - 0.017 15.2 18.1 0.034 14.2 13.1 3.3 3 1 1 4 4 4 0 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|336253702|ref|YP_004596809.1| - 0.031 14.9 20.0 0.061 13.9 15.0 3.2 3 1 1 4 4 4 0 4Fe-4S dicluster domain DUF3390 PF11870.8 gi|336253702|ref|YP_004596809.1| - 0.049 14.0 0.1 0.088 13.2 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3390) zf-CSL PF05207.13 gi|336253702|ref|YP_004596809.1| - 0.063 13.0 12.3 0.2 11.4 0.0 4.1 3 1 0 3 3 2 0 CSL zinc finger Fer4_16 PF13484.6 gi|336253702|ref|YP_004596809.1| - 0.57 11.1 15.6 0.32 12.0 10.6 3.1 3 1 1 4 4 4 0 4Fe-4S double cluster binding domain ETF_QO PF05187.13 gi|336253702|ref|YP_004596809.1| - 1.3 9.2 5.0 0.38 10.9 0.3 2.4 1 1 1 2 2 2 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4 PF00037.27 gi|336253702|ref|YP_004596809.1| - 2.1 8.3 15.2 1.4 8.8 3.3 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_21 PF14697.6 gi|336253702|ref|YP_004596809.1| - 2.6 8.3 13.2 0.75 10.0 0.8 3.0 4 0 0 4 4 3 0 4Fe-4S dicluster domain AAA_16 PF13191.6 gi|336253703|ref|YP_004596810.1| - 1.6e-09 38.4 0.7 6.2e-09 36.5 0.1 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|336253703|ref|YP_004596810.1| - 2.9e-05 24.4 0.0 8.3e-05 22.9 0.0 1.7 2 0 0 2 2 2 1 AAA domain HTH_Crp_2 PF13545.6 gi|336253703|ref|YP_004596810.1| - 0.0016 18.4 0.1 0.0037 17.2 0.1 1.7 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_IclR PF09339.10 gi|336253703|ref|YP_004596810.1| - 0.0026 17.5 0.0 0.0084 15.9 0.0 2.0 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.22 gi|336253703|ref|YP_004596810.1| - 0.0066 16.3 0.0 0.013 15.4 0.0 1.5 1 0 0 1 1 1 1 MarR family DprA_WH PF17782.1 gi|336253703|ref|YP_004596810.1| - 0.0077 16.3 3.5 0.12 12.6 0.5 3.4 2 1 1 3 3 3 1 DprA winged helix domain HTH_24 PF13412.6 gi|336253703|ref|YP_004596810.1| - 0.013 15.0 0.0 0.03 13.9 0.0 1.6 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding FaeA PF04703.12 gi|336253703|ref|YP_004596810.1| - 0.018 15.4 0.0 0.035 14.5 0.0 1.4 1 0 0 1 1 1 0 FaeA-like protein TrmB PF01978.19 gi|336253703|ref|YP_004596810.1| - 0.027 14.4 0.0 0.059 13.3 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|336253703|ref|YP_004596810.1| - 0.028 14.3 3.5 0.035 14.0 0.6 2.6 2 0 0 2 2 2 0 MarR family Guanylate_kin PF00625.21 gi|336253703|ref|YP_004596810.1| - 0.095 12.4 0.0 0.18 11.5 0.0 1.4 1 0 0 1 1 1 0 Guanylate kinase TmoB PF06234.12 gi|336253703|ref|YP_004596810.1| - 0.15 12.2 2.0 4.4 7.5 0.7 3.0 2 2 0 2 2 2 0 Toluene-4-monooxygenase system protein B (TmoB) YdjM PF04307.14 gi|336253706|ref|YP_004596813.1| - 4.6e-10 39.1 10.0 7.9e-10 38.3 10.0 1.4 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase Rick_17kDa_Anti PF05433.15 gi|336253706|ref|YP_004596813.1| - 0.013 15.3 1.1 0.013 15.3 1.1 2.2 3 0 0 3 3 3 0 Glycine zipper 2TM domain DUF4229 PF14012.6 gi|336253706|ref|YP_004596813.1| - 0.044 13.9 0.1 0.044 13.9 0.1 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF4229) tRNA_anti-codon PF01336.25 gi|336253707|ref|YP_004596814.1| - 0.11 12.5 0.1 0.18 11.8 0.1 1.4 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain VanZ PF04892.12 gi|336253708|ref|YP_004596815.1| - 3.6e-06 27.6 0.2 5.3e-06 27.1 0.2 1.3 1 0 0 1 1 1 1 VanZ like family DUF1072 PF06380.11 gi|336253708|ref|YP_004596815.1| - 0.15 11.9 2.3 0.54 10.2 0.1 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF1072) Polysacc_deac_1 PF01522.21 gi|336253709|ref|YP_004596816.1| - 1.4e-22 79.9 0.0 2.5e-22 79.1 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide deacetylase PIN PF01850.21 gi|336253710|ref|YP_004596817.1| - 1.6e-08 35.1 2.1 1.9e-08 34.8 2.1 1.0 1 0 0 1 1 1 1 PIN domain SQS_PSY PF00494.19 gi|336253711|ref|YP_004596818.1| - 0.031 13.8 0.1 0.036 13.6 0.1 1.1 1 0 0 1 1 1 0 Squalene/phytoene synthase Aldo_ket_red PF00248.21 gi|336253712|ref|YP_004596819.1| - 6.8e-69 232.3 0.0 8.1e-69 232.0 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family Sigma70_r3 PF04539.16 gi|336253713|ref|YP_004596820.1| - 0.0031 17.6 0.5 0.0034 17.5 0.5 1.2 1 0 0 1 1 1 1 Sigma-70 region 3 HTH_15 PF12324.8 gi|336253713|ref|YP_004596820.1| - 0.0076 16.2 0.3 0.0085 16.0 0.3 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain of alkylmercury lyase HTH_26 PF13443.6 gi|336253713|ref|YP_004596820.1| - 0.13 12.7 0.0 0.16 12.4 0.0 1.1 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain CBM_4_9 PF02018.17 gi|336253715|ref|YP_004596822.1| - 0.014 15.7 0.2 0.019 15.2 0.2 1.3 1 0 0 1 1 1 0 Carbohydrate binding domain Glycos_transf_2 PF00535.26 gi|336253717|ref|YP_004596824.1| - 6.2e-24 84.7 0.2 9.1e-24 84.2 0.2 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|336253717|ref|YP_004596824.1| - 5.3e-18 65.8 0.2 1.1e-17 64.8 0.2 1.4 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|336253717|ref|YP_004596824.1| - 2.6e-09 37.0 0.0 3.2e-09 36.7 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|336253717|ref|YP_004596824.1| - 0.00034 20.6 0.3 0.0016 18.4 0.3 1.9 1 1 0 1 1 1 1 Glycosyl transferase family group 2 PD40 PF07676.12 gi|336253718|ref|YP_004596825.1| - 0.0022 17.9 1.0 0.76 9.8 0.1 3.7 4 0 0 4 4 4 2 WD40-like Beta Propeller Repeat Glyco_trans_1_4 PF13692.6 gi|336253719|ref|YP_004596826.1| - 1.6e-17 64.2 0.0 2.9e-17 63.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|336253719|ref|YP_004596826.1| - 6.6e-16 58.3 0.0 1e-15 57.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|336253719|ref|YP_004596826.1| - 4.1e-15 56.2 0.0 6.4e-15 55.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|336253719|ref|YP_004596826.1| - 4.3e-06 27.3 0.0 6.6e-06 26.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|336253719|ref|YP_004596826.1| - 0.0079 16.2 0.0 0.016 15.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.6 gi|336253719|ref|YP_004596826.1| - 0.096 13.1 0.0 0.19 12.2 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferases group 1 Cytochrom_B_C PF00032.17 gi|336253720|ref|YP_004596827.1| - 2.5 8.5 16.2 0.15 12.3 5.1 3.4 3 1 0 3 3 3 0 Cytochrome b(C-terminal)/b6/petD Glycos_transf_1 PF00534.20 gi|336253721|ref|YP_004596828.1| - 2.1e-37 128.3 0.0 3.5e-37 127.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|336253721|ref|YP_004596828.1| - 2.5e-30 105.6 0.0 5.2e-30 104.6 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|336253721|ref|YP_004596828.1| - 3.8e-20 72.6 0.0 6.3e-20 71.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|336253721|ref|YP_004596828.1| - 3.2e-08 34.2 0.0 5.3e-08 33.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|336253721|ref|YP_004596828.1| - 1.6e-07 31.7 0.0 2.9e-07 30.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_5 PF16994.5 gi|336253721|ref|YP_004596828.1| - 0.0007 19.2 0.1 0.0011 18.6 0.1 1.4 1 0 0 1 1 1 1 Glycosyl-transferase family 4 Type_ISP_C PF18135.1 gi|336253721|ref|YP_004596828.1| - 0.015 14.3 0.0 0.024 13.7 0.0 1.4 1 0 0 1 1 1 0 Type ISP C-terminal specificity domain PhdYeFM_antitox PF02604.19 gi|336253721|ref|YP_004596828.1| - 0.029 14.2 0.0 0.094 12.5 0.0 1.9 1 0 0 1 1 1 0 Antitoxin Phd_YefM, type II toxin-antitoxin system DUF3732 PF12532.8 gi|336253721|ref|YP_004596828.1| - 0.033 13.8 0.2 0.31 10.6 0.0 2.4 3 0 0 3 3 3 0 Protein of unknown function (DUF3732) Glyco_trans_4_2 PF13477.6 gi|336253721|ref|YP_004596828.1| - 0.13 12.3 0.3 0.31 11.1 0.0 1.8 2 0 0 2 2 2 0 Glycosyl transferase 4-like YjeF_N PF03853.15 gi|336253721|ref|YP_004596828.1| - 0.19 11.6 0.1 17 5.3 0.0 2.5 2 1 0 2 2 2 0 YjeF-related protein N-terminus Glycos_transf_1 PF00534.20 gi|336253722|ref|YP_004596829.1| - 1.8e-27 96.0 0.0 3.1e-27 95.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|336253722|ref|YP_004596829.1| - 1.7e-21 77.1 0.0 2.7e-21 76.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|336253722|ref|YP_004596829.1| - 9.5e-10 38.7 0.2 0.00045 20.3 0.0 2.5 3 0 0 3 3 3 2 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|336253722|ref|YP_004596829.1| - 5.1e-06 27.0 0.0 1.1e-05 25.9 0.0 1.6 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|336253722|ref|YP_004596829.1| - 0.00091 19.6 0.0 0.0017 18.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Polysacc_synt_C PF14667.6 gi|336253723|ref|YP_004596830.1| - 8.7e-18 64.8 19.3 8.7e-18 64.8 19.3 3.7 2 1 1 3 3 3 1 Polysaccharide biosynthesis C-terminal domain Polysacc_synt PF01943.17 gi|336253723|ref|YP_004596830.1| - 2.2e-13 50.3 22.1 2.2e-13 50.3 22.1 2.6 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.6 gi|336253723|ref|YP_004596830.1| - 3.4e-13 49.5 13.5 3.4e-13 49.5 13.5 2.1 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein MurJ PF03023.14 gi|336253723|ref|YP_004596830.1| - 5.5e-05 22.0 17.5 5.5e-05 22.0 17.5 2.9 3 1 0 3 3 3 1 Lipid II flippase MurJ Methyltransf_21 PF05050.12 gi|336253724|ref|YP_004596831.1| - 1.1e-18 67.9 0.0 8.6e-18 64.9 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase FkbM domain Met_10 PF02475.16 gi|336253724|ref|YP_004596831.1| - 0.00089 19.1 0.0 0.0015 18.3 0.0 1.3 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_25 PF13649.6 gi|336253724|ref|YP_004596831.1| - 0.0029 18.3 0.0 0.0081 16.9 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|336253724|ref|YP_004596831.1| - 0.016 15.0 0.0 0.025 14.4 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain MTS PF05175.14 gi|336253724|ref|YP_004596831.1| - 0.047 13.2 0.0 0.092 12.3 0.0 1.5 2 0 0 2 2 2 0 Methyltransferase small domain V_cholerae_RfbT PF05575.11 gi|336253724|ref|YP_004596831.1| - 0.052 12.8 0.0 0.21 10.8 0.0 1.8 2 0 0 2 2 2 0 Vibrio cholerae RfbT protein Methyltransf_23 PF13489.6 gi|336253724|ref|YP_004596831.1| - 0.097 12.5 0.0 0.49 10.2 0.0 2.0 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_3 PF01596.17 gi|336253724|ref|YP_004596831.1| - 0.14 11.3 0.0 0.21 10.7 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase DUF1601 PF07671.11 gi|336253724|ref|YP_004596831.1| - 0.21 11.5 0.1 0.37 10.7 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1601) Epimerase PF01370.21 gi|336253726|ref|YP_004596833.1| - 4.9e-64 216.1 0.1 6.2e-64 215.7 0.1 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|336253726|ref|YP_004596833.1| - 2.6e-62 211.2 0.0 5e-62 210.2 0.0 1.4 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|336253726|ref|YP_004596833.1| - 6.6e-27 94.2 0.0 9.1e-27 93.8 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|336253726|ref|YP_004596833.1| - 1.2e-23 83.6 0.1 1.5e-23 83.3 0.1 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|336253726|ref|YP_004596833.1| - 1.5e-21 76.9 0.3 2.4e-20 72.9 0.3 2.4 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|336253726|ref|YP_004596833.1| - 2.2e-16 59.8 0.1 2.6e-13 49.7 0.1 2.4 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.6 gi|336253726|ref|YP_004596833.1| - 1.4e-10 41.3 0.0 2.4e-10 40.6 0.0 1.5 1 0 0 1 1 1 1 NAD(P)H-binding NmrA PF05368.13 gi|336253726|ref|YP_004596833.1| - 0.00017 21.2 0.1 0.00037 20.1 0.0 1.6 2 0 0 2 2 2 1 NmrA-like family Methyltransf_31 PF13847.6 gi|336253726|ref|YP_004596833.1| - 0.0011 18.8 0.0 0.0093 15.8 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain adh_short PF00106.25 gi|336253726|ref|YP_004596833.1| - 0.0048 16.4 0.2 0.017 14.6 0.1 2.1 2 1 0 2 2 2 1 short chain dehydrogenase KR PF08659.10 gi|336253726|ref|YP_004596833.1| - 0.085 12.8 1.7 0.38 10.6 0.4 2.6 2 1 0 2 2 2 0 KR domain TrkA_N PF02254.18 gi|336253726|ref|YP_004596833.1| - 0.1 12.9 1.1 0.59 10.4 0.2 2.4 2 1 0 2 2 2 0 TrkA-N domain Bac_transf PF02397.16 gi|336253727|ref|YP_004596834.1| - 2e-59 200.3 0.0 3.2e-59 199.6 0.0 1.3 1 0 0 1 1 1 1 Bacterial sugar transferase DUF1970 PF09301.10 gi|336253727|ref|YP_004596834.1| - 3.4e-12 46.6 0.0 7.7e-12 45.5 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF1970) DUF4330 PF14221.6 gi|336253728|ref|YP_004596835.1| - 3.8e-22 79.3 14.4 7.4e-12 45.8 4.4 3.9 2 1 1 3 3 3 2 Domain of unknown function (DUF4330) Sugarporin_N PF11471.8 gi|336253729|ref|YP_004596836.1| - 0.038 14.0 0.4 0.1 12.6 0.4 1.8 1 0 0 1 1 1 0 Maltoporin periplasmic N-terminal extension BacA PF02673.18 gi|336253730|ref|YP_004596837.1| - 6.6e-51 173.5 13.4 8e-51 173.2 13.4 1.0 1 0 0 1 1 1 1 Bacitracin resistance protein BacA DUF3767 PF12597.8 gi|336253730|ref|YP_004596837.1| - 0.071 12.9 2.4 0.71 9.7 0.1 3.0 2 1 1 3 3 3 0 Protein of unknown function (DUF3767) AglB_L1 PF18079.1 gi|336253732|ref|YP_004596839.1| - 2.7e-05 24.4 2.0 0.00044 20.5 2.0 2.6 1 1 0 1 1 1 1 Archaeal glycosylation protein B long peripheral domain Mannosyl_trans4 PF15971.5 gi|336253732|ref|YP_004596839.1| - 0.00088 19.1 2.7 0.0031 17.4 2.7 1.9 1 0 0 1 1 1 1 DolP-mannose mannosyltransferase STT3 PF02516.14 gi|336253732|ref|YP_004596839.1| - 0.041 12.8 5.1 0.068 12.1 5.1 1.5 1 1 0 1 1 1 0 Oligosaccharyl transferase STT3 subunit PGF-CTERM PF18204.1 gi|336253733|ref|YP_004596840.1| - 3.9e-06 26.6 7.9 3.9e-06 26.6 7.9 1.8 2 0 0 2 2 2 1 PGF-CTERM motif CARDB PF07705.11 gi|336253733|ref|YP_004596840.1| - 0.0013 18.9 0.1 0.0013 18.9 0.1 4.3 6 0 0 6 6 6 1 CARDB AglB_L1 PF18079.1 gi|336253734|ref|YP_004596841.1| - 3e-26 91.5 6.2 8.7e-26 90.0 6.2 1.9 1 0 0 1 1 1 1 Archaeal glycosylation protein B long peripheral domain STT3 PF02516.14 gi|336253734|ref|YP_004596841.1| - 2.5e-20 72.9 15.4 1.3e-19 70.5 15.4 2.0 1 1 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit Transmemb_17 PF09799.9 gi|336253734|ref|YP_004596841.1| - 0.14 12.8 4.2 0.86 10.2 4.2 2.4 1 0 0 1 1 1 0 Predicted membrane protein Glycos_transf_2 PF00535.26 gi|336253735|ref|YP_004596842.1| - 3.4e-23 82.3 0.3 4.9e-23 81.8 0.3 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|336253735|ref|YP_004596842.1| - 8.2e-14 52.0 0.4 1.3e-13 51.3 0.4 1.3 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|336253735|ref|YP_004596842.1| - 6.2e-07 29.2 2.8 6.6e-07 29.1 0.4 1.9 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|336253735|ref|YP_004596842.1| - 1e-05 25.6 0.0 1.4e-05 25.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family group 2 PDZ_2 PF13180.6 gi|336253735|ref|YP_004596842.1| - 0.12 12.7 0.8 0.88 9.9 0.1 2.1 1 1 1 2 2 2 0 PDZ domain Glyco_trans_1_4 PF13692.6 gi|336253736|ref|YP_004596843.1| - 1.4e-13 51.4 0.0 3.5e-13 50.2 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|336253736|ref|YP_004596843.1| - 8.4e-09 35.2 0.0 1.6e-08 34.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|336253736|ref|YP_004596843.1| - 0.0042 17.5 3.4 0.0044 17.5 0.5 2.3 1 1 1 2 2 2 1 Glycosyl transferase 4-like domain B12-binding PF02310.19 gi|336253736|ref|YP_004596843.1| - 0.0052 16.8 0.1 0.38 10.8 0.0 2.8 2 1 0 2 2 2 1 B12 binding domain Glyco_transf_4 PF13439.6 gi|336253736|ref|YP_004596843.1| - 0.008 16.2 0.1 0.06 13.4 0.0 2.0 1 1 1 2 2 2 1 Glycosyltransferase Family 4 Sulfatase PF00884.23 gi|336253737|ref|YP_004596844.1| - 2.9e-43 148.4 0.7 6.9e-43 147.2 0.3 1.7 2 0 0 2 2 2 1 Sulfatase DUF4976 PF16347.5 gi|336253737|ref|YP_004596844.1| - 2.7e-05 24.4 0.5 0.0012 19.1 0.0 2.5 2 0 0 2 2 2 1 Domain of unknown function (DUF4976) DUF4994 PF16385.5 gi|336253737|ref|YP_004596844.1| - 0.00056 19.8 0.2 0.05 13.5 0.2 2.4 1 1 0 1 1 1 1 Domain of unknown function Sulfatase_C PF14707.6 gi|336253737|ref|YP_004596844.1| - 0.0064 17.2 0.0 0.016 15.9 0.0 1.7 1 0 0 1 1 1 1 C-terminal region of aryl-sulfatase Metalloenzyme PF01676.18 gi|336253737|ref|YP_004596844.1| - 0.086 12.2 0.1 0.38 10.1 0.1 1.9 2 0 0 2 2 2 0 Metalloenzyme superfamily Glycos_transf_2 PF00535.26 gi|336253738|ref|YP_004596845.1| - 1.3e-33 116.2 0.3 1.9e-33 115.6 0.3 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|336253738|ref|YP_004596845.1| - 4e-23 82.5 0.2 6.3e-23 81.9 0.1 1.3 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|336253738|ref|YP_004596845.1| - 5.7e-13 49.0 0.0 7.3e-13 48.6 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 EGF_CA PF07645.15 gi|336253738|ref|YP_004596845.1| - 0.21 11.8 0.0 0.45 10.8 0.0 1.4 1 0 0 1 1 1 0 Calcium-binding EGF domain TPR_14 PF13428.6 gi|336253738|ref|YP_004596845.1| - 3 8.9 5.4 1.3 10.1 1.5 2.6 3 0 0 3 3 3 0 Tetratricopeptide repeat PALP PF00291.25 gi|336253739|ref|YP_004596846.1| - 1.4e-61 208.5 0.2 1.6e-61 208.3 0.2 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme CbiG_N PF11760.8 gi|336253739|ref|YP_004596846.1| - 0.073 13.1 1.5 0.73 9.9 0.0 2.6 3 0 0 3 3 3 0 Cobalamin synthesis G N-terminal GATase_7 PF13537.6 gi|336253740|ref|YP_004596847.1| - 1.2e-08 34.9 0.0 2.5e-08 33.9 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain Asn_synthase PF00733.21 gi|336253740|ref|YP_004596847.1| - 1.3e-06 28.4 0.7 1.1e-05 25.3 0.7 2.1 1 1 0 1 1 1 1 Asparagine synthase GATase_6 PF13522.6 gi|336253740|ref|YP_004596847.1| - 0.00032 20.9 0.1 0.0034 17.6 0.0 2.2 2 0 0 2 2 2 1 Glutamine amidotransferase domain Methyltransf_21 PF05050.12 gi|336253741|ref|YP_004596848.1| - 1.7e-14 54.2 0.0 2.7e-14 53.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase FkbM domain V_cholerae_RfbT PF05575.11 gi|336253741|ref|YP_004596848.1| - 1.5e-05 24.4 0.0 3.9e-05 23.1 0.0 1.5 1 1 0 1 1 1 1 Vibrio cholerae RfbT protein Polysacc_synt_C PF14667.6 gi|336253742|ref|YP_004596849.1| - 1e-16 61.3 14.7 1e-16 61.3 14.7 3.6 3 1 0 3 3 3 1 Polysaccharide biosynthesis C-terminal domain Polysacc_synt_3 PF13440.6 gi|336253742|ref|YP_004596849.1| - 2.4e-16 59.8 6.4 2.4e-16 59.8 6.4 1.8 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt PF01943.17 gi|336253742|ref|YP_004596849.1| - 3.7e-15 56.1 21.4 3.7e-15 56.1 21.4 2.4 3 0 0 3 3 3 1 Polysaccharide biosynthesis protein MurJ PF03023.14 gi|336253742|ref|YP_004596849.1| - 1.7e-06 27.0 16.7 1.7e-06 27.0 16.7 2.9 2 1 0 2 2 2 1 Lipid II flippase MurJ NTP_transferase PF00483.23 gi|336253743|ref|YP_004596850.1| - 4.4e-40 137.8 0.0 5.3e-40 137.6 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|336253743|ref|YP_004596850.1| - 2.4e-14 54.0 0.0 2.9e-14 53.7 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|336253743|ref|YP_004596850.1| - 7.2e-07 29.2 0.0 5.4e-06 26.3 0.0 2.0 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Glycos_transf_2 PF00535.26 gi|336253743|ref|YP_004596850.1| - 0.021 14.6 0.0 0.029 14.2 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase family 2 TrmB PF01978.19 gi|336253744|ref|YP_004596851.1| - 9.5e-20 70.3 0.0 1.8e-19 69.4 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|336253744|ref|YP_004596851.1| - 0.0033 17.2 0.0 0.0059 16.4 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|336253744|ref|YP_004596851.1| - 0.0051 16.7 0.3 0.038 13.9 0.0 2.4 3 0 0 3 3 3 1 MarR family HTH_20 PF12840.7 gi|336253744|ref|YP_004596851.1| - 0.024 14.7 0.1 0.087 12.9 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain Rrf2 PF02082.20 gi|336253744|ref|YP_004596851.1| - 0.075 13.4 0.0 0.13 12.6 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator HTH_9 PF08221.11 gi|336253744|ref|YP_004596851.1| - 0.15 12.2 0.0 0.26 11.4 0.0 1.3 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain Epimerase PF01370.21 gi|336253745|ref|YP_004596852.1| - 1e-39 136.4 0.0 1.5e-39 135.9 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|336253745|ref|YP_004596852.1| - 6.9e-30 104.6 0.0 7.9e-30 104.4 0.0 1.0 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|336253745|ref|YP_004596852.1| - 2.1e-25 89.4 0.1 2.6e-25 89.1 0.1 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.19 gi|336253745|ref|YP_004596852.1| - 4.4e-21 75.1 0.0 1.1e-20 73.8 0.0 1.7 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|336253745|ref|YP_004596852.1| - 2.1e-16 60.0 0.0 1.3e-15 57.3 0.0 2.2 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|336253745|ref|YP_004596852.1| - 3.2e-08 33.1 0.0 4.5e-05 22.7 0.0 2.6 2 1 0 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.6 gi|336253745|ref|YP_004596852.1| - 8.2e-08 32.3 0.0 2.3e-07 30.9 0.0 1.9 1 1 0 1 1 1 1 NAD(P)H-binding NmrA PF05368.13 gi|336253745|ref|YP_004596852.1| - 9.3e-05 22.1 0.1 0.00065 19.3 0.0 2.2 2 1 0 2 2 2 1 NmrA-like family Semialdhyde_dh PF01118.24 gi|336253745|ref|YP_004596852.1| - 0.0011 19.3 0.1 0.01 16.3 0.0 2.2 2 0 0 2 2 2 1 Semialdehyde dehydrogenase, NAD binding domain DapB_N PF01113.20 gi|336253745|ref|YP_004596852.1| - 0.0054 16.9 0.2 0.014 15.5 0.0 1.8 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus Sacchrp_dh_NADP PF03435.18 gi|336253745|ref|YP_004596852.1| - 0.0077 16.5 0.0 0.021 15.1 0.0 1.7 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain Calsequestrin PF01216.17 gi|336253745|ref|YP_004596852.1| - 0.012 14.7 0.3 0.018 14.1 0.3 1.2 1 0 0 1 1 1 0 Calsequestrin Ldh_1_N PF00056.23 gi|336253745|ref|YP_004596852.1| - 0.014 15.5 0.0 0.025 14.7 0.0 1.3 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain Epimerase PF01370.21 gi|336253746|ref|YP_004596853.1| - 4.3e-49 167.2 0.0 5.1e-49 166.9 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|336253746|ref|YP_004596853.1| - 7.2e-35 120.9 0.0 1.5e-34 119.9 0.0 1.5 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|336253746|ref|YP_004596853.1| - 5.2e-26 91.3 0.0 6.8e-26 90.9 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|336253746|ref|YP_004596853.1| - 5e-13 48.8 0.0 6.2e-13 48.5 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|336253746|ref|YP_004596853.1| - 1.1e-11 44.4 0.0 1.8e-11 43.7 0.0 1.6 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|336253746|ref|YP_004596853.1| - 6.2e-11 41.9 0.0 8e-07 28.5 0.0 2.3 2 0 0 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.6 gi|336253746|ref|YP_004596853.1| - 1.1e-10 41.7 0.0 1.5e-10 41.3 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding Sacchrp_dh_NADP PF03435.18 gi|336253746|ref|YP_004596853.1| - 0.0004 20.6 0.0 0.00076 19.7 0.0 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain KR PF08659.10 gi|336253746|ref|YP_004596853.1| - 0.0011 18.9 0.2 0.0032 17.4 0.2 1.8 1 1 0 1 1 1 1 KR domain adh_short PF00106.25 gi|336253746|ref|YP_004596853.1| - 0.017 14.5 0.0 0.026 14.0 0.0 1.3 1 0 0 1 1 1 0 short chain dehydrogenase Ldh_1_N PF00056.23 gi|336253746|ref|YP_004596853.1| - 0.041 14.0 0.1 0.061 13.4 0.1 1.3 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain NmrA PF05368.13 gi|336253746|ref|YP_004596853.1| - 0.091 12.3 0.0 1.8 8.1 0.0 2.4 1 1 0 1 1 1 0 NmrA-like family Epimerase PF01370.21 gi|336253747|ref|YP_004596854.1| - 1.8e-20 73.5 0.1 3.9e-20 72.4 0.1 1.6 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|336253747|ref|YP_004596854.1| - 4.6e-16 59.1 0.1 2.4e-15 56.8 0.1 2.0 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|336253747|ref|YP_004596854.1| - 0.00012 21.4 0.0 0.021 14.0 0.1 2.9 2 1 0 2 2 2 2 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|336253747|ref|YP_004596854.1| - 0.00018 20.7 0.0 0.001 18.3 0.0 2.1 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein KR PF08659.10 gi|336253747|ref|YP_004596854.1| - 0.016 15.1 0.0 0.025 14.5 0.0 1.3 1 0 0 1 1 1 0 KR domain 3Beta_HSD PF01073.19 gi|336253747|ref|YP_004596854.1| - 0.032 13.3 0.0 0.11 11.5 0.0 1.8 2 1 0 2 2 2 0 3-beta hydroxysteroid dehydrogenase/isomerase family Glycos_transf_2 PF00535.26 gi|336253749|ref|YP_004596856.1| - 5.3e-22 78.4 0.0 9e-22 77.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|336253749|ref|YP_004596856.1| - 3.9e-14 53.1 0.1 1.5e-13 51.2 0.1 1.7 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|336253749|ref|YP_004596856.1| - 2.4e-07 30.5 0.2 5.9e-06 26.0 0.1 2.1 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|336253749|ref|YP_004596856.1| - 1.9e-05 24.7 0.0 3.2e-05 23.9 0.0 1.4 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.6 gi|336253749|ref|YP_004596856.1| - 0.0024 17.4 0.0 0.0045 16.5 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 21 Sulfatase PF00884.23 gi|336253750|ref|YP_004596857.1| - 2.9e-23 82.7 0.3 7.3e-23 81.4 0.3 1.6 1 1 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 gi|336253750|ref|YP_004596857.1| - 1.3e-08 34.8 1.5 1.3e-06 28.3 0.1 2.2 1 1 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase Epimerase PF01370.21 gi|336253751|ref|YP_004596858.1| - 6.8e-64 215.6 0.0 8.4e-64 215.3 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|336253751|ref|YP_004596858.1| - 4.6e-62 210.4 0.0 3.4e-61 207.5 0.0 1.8 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|336253751|ref|YP_004596858.1| - 1.3e-30 106.4 0.0 1.6e-30 106.1 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|336253751|ref|YP_004596858.1| - 1.9e-17 63.3 0.0 1.2e-16 60.8 0.0 1.8 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.6 gi|336253751|ref|YP_004596858.1| - 1.1e-13 51.5 0.0 1.5e-13 51.0 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding RmlD_sub_bind PF04321.17 gi|336253751|ref|YP_004596858.1| - 9.7e-12 44.6 0.0 1.1e-11 44.3 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|336253751|ref|YP_004596858.1| - 2.5e-10 40.0 0.1 4.4e-08 32.6 0.1 2.5 1 1 0 1 1 1 1 Male sterility protein NmrA PF05368.13 gi|336253751|ref|YP_004596858.1| - 1.8e-06 27.7 0.1 3e-06 27.0 0.1 1.3 1 0 0 1 1 1 1 NmrA-like family adh_short PF00106.25 gi|336253751|ref|YP_004596858.1| - 0.00029 20.3 0.1 0.0005 19.6 0.1 1.4 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|336253751|ref|YP_004596858.1| - 0.00041 20.3 1.1 0.0013 18.7 1.1 1.7 1 1 0 1 1 1 1 KR domain TrkA_N PF02254.18 gi|336253751|ref|YP_004596858.1| - 0.0076 16.5 0.0 0.017 15.4 0.0 1.7 1 0 0 1 1 1 1 TrkA-N domain Glycos_transf_1 PF00534.20 gi|336253752|ref|YP_004596859.1| - 2.5e-30 105.3 0.0 3.7e-30 104.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|336253752|ref|YP_004596859.1| - 1.1e-27 97.1 0.0 2.5e-27 95.9 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|336253752|ref|YP_004596859.1| - 9.5e-08 32.3 0.0 2e-07 31.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|336253752|ref|YP_004596859.1| - 0.016 15.6 1.1 0.027 14.9 0.3 1.8 2 0 0 2 2 2 0 Glycosyl transferase 4-like domain Sulfatase PF00884.23 gi|336253753|ref|YP_004596860.1| - 1e-31 110.5 0.0 1.6e-31 109.9 0.0 1.2 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 gi|336253753|ref|YP_004596860.1| - 8.2e-15 55.2 1.4 2.9e-14 53.4 1.4 1.9 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase DUF229 PF02995.17 gi|336253753|ref|YP_004596860.1| - 3.8e-05 22.5 0.0 9.1e-05 21.2 0.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF229) Metalloenzyme PF01676.18 gi|336253753|ref|YP_004596860.1| - 0.0011 18.4 0.0 0.0046 16.3 0.0 1.8 2 0 0 2 2 2 1 Metalloenzyme superfamily DUF1501 PF07394.12 gi|336253753|ref|YP_004596860.1| - 0.0053 15.9 0.0 0.0085 15.2 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1501) DUF3974 PF13120.6 gi|336253753|ref|YP_004596860.1| - 0.061 13.4 0.0 0.11 12.6 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3974) Hexapep PF00132.24 gi|336253754|ref|YP_004596861.1| - 3.2e-12 45.7 5.1 1.3e-09 37.4 2.0 3.8 4 0 0 4 4 4 2 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|336253754|ref|YP_004596861.1| - 4.5e-09 35.9 15.6 6e-09 35.5 3.3 3.3 4 0 0 4 4 4 2 Hexapeptide repeat of succinyl-transferase Mso1_Sec1_bdg PF14475.6 gi|336253754|ref|YP_004596861.1| - 0.1 12.2 0.1 0.18 11.4 0.1 1.4 1 0 0 1 1 1 0 Sec1-binding region of Mso1 Capsule_synth PF05159.14 gi|336253755|ref|YP_004596862.1| - 8.1e-09 35.3 0.0 1.2e-08 34.8 0.0 1.2 1 0 0 1 1 1 1 Capsule polysaccharide biosynthesis protein Epimerase_2 PF02350.19 gi|336253755|ref|YP_004596862.1| - 0.00097 18.1 0.0 0.0016 17.3 0.0 1.3 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase CTP_transf_3 PF02348.19 gi|336253756|ref|YP_004596863.1| - 2.1e-17 63.8 0.0 2.8e-17 63.4 0.0 1.2 1 0 0 1 1 1 1 Cytidylyltransferase NTP_transf_3 PF12804.7 gi|336253756|ref|YP_004596863.1| - 2.1e-11 44.4 0.0 3.2e-11 43.9 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain DUF2064 PF09837.9 gi|336253756|ref|YP_004596863.1| - 0.077 12.8 0.0 0.13 12.1 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2064) FAA_hydrolase PF01557.18 gi|336253757|ref|YP_004596864.1| - 1.9e-31 109.5 0.1 2.1e-31 109.3 0.1 1.0 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family Glyco_trans_1_4 PF13692.6 gi|336253758|ref|YP_004596865.1| - 0.0096 16.3 0.4 0.02 15.3 0.4 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_tran_28_C PF04101.16 gi|336253758|ref|YP_004596865.1| - 0.022 14.7 0.0 0.031 14.3 0.0 1.2 1 0 0 1 1 1 0 Glycosyltransferase family 28 C-terminal domain DUF4778 PF16008.5 gi|336253758|ref|YP_004596865.1| - 0.19 11.8 0.0 0.24 11.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4778) Glyco_trans_1_2 PF13524.6 gi|336253758|ref|YP_004596865.1| - 2.1 8.8 4.2 0.79 10.2 0.3 2.4 2 1 0 2 2 2 0 Glycosyl transferases group 1 N_formyltrans_C PF18216.1 gi|336253759|ref|YP_004596866.1| - 6.1e-23 80.2 0.4 1.2e-22 79.3 0.4 1.5 1 0 0 1 1 1 1 N-formyltransferase dimerization C-terminal domain Formyl_trans_N PF00551.19 gi|336253759|ref|YP_004596866.1| - 4e-21 75.6 0.0 5.6e-21 75.1 0.0 1.1 1 0 0 1 1 1 1 Formyl transferase NeuB PF03102.14 gi|336253760|ref|YP_004596867.1| - 1.6e-85 286.4 0.0 1.9e-85 286.2 0.0 1.0 1 0 0 1 1 1 1 NeuB family SAF PF08666.12 gi|336253760|ref|YP_004596867.1| - 1e-10 42.1 0.1 2.3e-10 40.9 0.1 1.7 1 0 0 1 1 1 1 SAF domain DUF3486 PF11985.8 gi|336253760|ref|YP_004596867.1| - 0.074 13.5 0.4 0.14 12.5 0.1 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3486) DegT_DnrJ_EryC1 PF01041.17 gi|336253761|ref|YP_004596868.1| - 3e-120 401.8 0.0 3.4e-120 401.7 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.21 gi|336253761|ref|YP_004596868.1| - 2.2e-08 33.7 0.0 1e-07 31.5 0.0 1.9 2 0 0 2 2 2 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|336253761|ref|YP_004596868.1| - 1.4e-07 31.1 0.0 3.4e-07 29.8 0.0 1.5 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.19 gi|336253761|ref|YP_004596868.1| - 8.3e-07 28.3 0.0 1.3e-06 27.6 0.0 1.3 1 1 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|336253761|ref|YP_004596868.1| - 3.8e-06 25.7 0.0 5.2e-06 25.2 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme OKR_DC_1 PF01276.20 gi|336253761|ref|YP_004596868.1| - 0.0097 14.7 0.1 0.018 13.8 0.1 1.4 1 1 0 1 1 1 1 Orn/Lys/Arg decarboxylase, major domain GDP_Man_Dehyd PF16363.5 gi|336253762|ref|YP_004596869.1| - 8.2e-59 199.7 0.0 1.3e-58 199.0 0.0 1.3 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|336253762|ref|YP_004596869.1| - 1.8e-54 184.8 0.0 2.1e-54 184.5 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|336253762|ref|YP_004596869.1| - 4.5e-19 68.5 0.0 6.6e-19 68.0 0.0 1.3 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|336253762|ref|YP_004596869.1| - 1.1e-16 60.8 0.0 1.4e-16 60.4 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|336253762|ref|YP_004596869.1| - 2.7e-13 49.7 0.0 4.9e-09 35.7 0.0 2.2 2 0 0 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.6 gi|336253762|ref|YP_004596869.1| - 1.7e-10 41.1 0.0 3.9e-10 39.9 0.0 1.6 2 0 0 2 2 2 1 NAD(P)H-binding Polysacc_synt_2 PF02719.15 gi|336253762|ref|YP_004596869.1| - 5.3e-10 38.9 0.0 5.5e-09 35.6 0.0 2.1 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein adh_short PF00106.25 gi|336253762|ref|YP_004596869.1| - 4.9e-06 26.1 0.0 8.5e-05 22.1 0.0 2.3 2 0 0 2 2 2 1 short chain dehydrogenase NmrA PF05368.13 gi|336253762|ref|YP_004596869.1| - 0.0004 20.0 0.0 0.00071 19.2 0.0 1.4 1 0 0 1 1 1 1 NmrA-like family KR PF08659.10 gi|336253762|ref|YP_004596869.1| - 0.02 14.8 0.2 0.076 12.9 0.0 2.0 2 1 0 2 2 2 0 KR domain adh_short_C2 PF13561.6 gi|336253762|ref|YP_004596869.1| - 0.1 12.1 0.0 0.23 11.0 0.0 1.5 1 1 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase Polysacc_synt_2 PF02719.15 gi|336253763|ref|YP_004596870.1| - 2.8e-90 302.4 0.0 3.4e-90 302.2 0.0 1.0 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein Epimerase PF01370.21 gi|336253763|ref|YP_004596870.1| - 2.5e-22 79.5 0.0 2.6e-21 76.2 0.0 2.0 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|336253763|ref|YP_004596870.1| - 7.5e-22 77.6 0.0 1.2e-21 76.9 0.0 1.4 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family GDP_Man_Dehyd PF16363.5 gi|336253763|ref|YP_004596870.1| - 1.5e-16 60.7 0.0 3.3e-16 59.6 0.0 1.7 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|336253763|ref|YP_004596870.1| - 1e-14 54.3 0.0 1.9e-13 50.2 0.0 2.1 1 1 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.6 gi|336253763|ref|YP_004596870.1| - 1.1e-12 48.3 0.3 2.3e-12 47.2 0.1 1.7 2 0 0 2 2 2 1 NAD(P)H-binding NAD_binding_4 PF07993.12 gi|336253763|ref|YP_004596870.1| - 7.4e-09 35.2 0.1 2.6e-05 23.5 0.1 3.2 1 1 1 2 2 2 2 Male sterility protein adh_short PF00106.25 gi|336253763|ref|YP_004596870.1| - 1.2e-08 34.7 0.0 1.8e-08 34.1 0.0 1.3 1 0 0 1 1 1 1 short chain dehydrogenase NmrA PF05368.13 gi|336253763|ref|YP_004596870.1| - 3.8e-05 23.4 0.0 6.3e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 NmrA-like family Sacchrp_dh_NADP PF03435.18 gi|336253763|ref|YP_004596870.1| - 7.1e-05 23.1 0.0 0.00014 22.1 0.0 1.5 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain adh_short_C2 PF13561.6 gi|336253763|ref|YP_004596870.1| - 0.0019 17.8 0.0 0.0036 16.9 0.0 1.4 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase TrkA_N PF02254.18 gi|336253763|ref|YP_004596870.1| - 0.0033 17.7 0.1 0.011 16.0 0.0 1.9 2 1 0 2 2 2 1 TrkA-N domain Methyltransf_25 PF13649.6 gi|336253763|ref|YP_004596870.1| - 0.0039 17.9 0.0 0.043 14.5 0.0 2.3 2 0 0 2 2 2 1 Methyltransferase domain Ldh_1_N PF00056.23 gi|336253763|ref|YP_004596870.1| - 0.015 15.4 0.1 0.027 14.6 0.1 1.5 1 0 0 1 1 1 0 lactate/malate dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|336253763|ref|YP_004596870.1| - 0.14 12.7 0.0 0.46 11.1 0.0 1.9 2 0 0 2 2 1 0 NADP oxidoreductase coenzyme F420-dependent ABC_tran PF00005.27 gi|336253764|ref|YP_004596871.1| - 1.5e-33 116.2 0.0 2.5e-33 115.5 0.0 1.4 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.23 gi|336253764|ref|YP_004596871.1| - 9.4e-13 48.4 8.5 1.5e-12 47.7 8.5 1.3 1 0 0 1 1 1 1 ABC transporter transmembrane region SMC_N PF02463.19 gi|336253764|ref|YP_004596871.1| - 4.1e-08 32.9 0.1 2.7e-06 27.0 0.0 2.4 3 0 0 3 3 3 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|336253764|ref|YP_004596871.1| - 0.00017 21.5 0.0 0.00035 20.5 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_29 PF13555.6 gi|336253764|ref|YP_004596871.1| - 0.0012 18.5 0.0 0.0029 17.3 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|336253764|ref|YP_004596871.1| - 0.0055 17.1 0.1 0.016 15.6 0.1 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|336253764|ref|YP_004596871.1| - 0.012 15.9 0.1 0.094 13.0 0.1 2.3 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|336253764|ref|YP_004596871.1| - 0.054 13.1 1.8 0.27 10.8 0.0 2.9 4 0 0 4 4 4 0 AAA domain AAA_23 PF13476.6 gi|336253764|ref|YP_004596871.1| - 0.07 13.6 0.0 0.13 12.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain G-alpha PF00503.20 gi|336253764|ref|YP_004596871.1| - 0.071 12.3 0.0 0.11 11.6 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit AAA_30 PF13604.6 gi|336253764|ref|YP_004596871.1| - 0.083 12.6 0.1 0.43 10.3 0.0 2.1 3 0 0 3 3 3 0 AAA domain Reticulon PF02453.17 gi|336253764|ref|YP_004596871.1| - 0.11 12.5 2.8 0.36 10.8 2.0 2.0 1 1 1 2 2 2 0 Reticulon MMR_HSR1 PF01926.23 gi|336253764|ref|YP_004596871.1| - 0.15 12.1 0.0 0.37 10.9 0.0 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase SIS PF01380.22 gi|336253765|ref|YP_004596872.1| - 2e-37 128.0 0.2 4.5e-20 71.8 0.1 2.4 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.6 gi|336253765|ref|YP_004596872.1| - 5.9e-22 78.3 0.0 1.2e-21 77.3 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|336253765|ref|YP_004596872.1| - 4.6e-19 68.5 0.0 7.5e-19 67.9 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.6 gi|336253765|ref|YP_004596872.1| - 0.078 11.9 0.0 0.23 10.3 0.0 1.7 2 0 0 2 2 2 0 Glutamine amidotransferases class-II NTP_transferase PF00483.23 gi|336253766|ref|YP_004596873.1| - 4.2e-45 154.3 0.0 6.1e-45 153.7 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|336253766|ref|YP_004596873.1| - 3.7e-18 66.4 0.1 5.3e-18 65.9 0.1 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.24 gi|336253766|ref|YP_004596873.1| - 3.5e-14 51.9 27.6 1.2e-08 34.3 4.3 4.1 2 1 2 4 4 4 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|336253766|ref|YP_004596873.1| - 2.1e-08 33.8 23.9 3.4e-05 23.5 3.5 4.3 3 1 0 3 3 3 2 Hexapeptide repeat of succinyl-transferase IspD PF01128.19 gi|336253766|ref|YP_004596873.1| - 8.9e-08 32.1 0.9 8.9e-08 32.1 0.9 1.8 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Fucokinase PF07959.12 gi|336253766|ref|YP_004596873.1| - 0.007 15.4 0.0 0.021 13.8 0.1 1.8 2 0 0 2 2 2 1 L-fucokinase DUF4954 PF16314.5 gi|336253766|ref|YP_004596873.1| - 0.067 11.3 6.5 0.035 12.3 4.2 1.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4954) GDP_Man_Dehyd PF16363.5 gi|336253767|ref|YP_004596874.1| - 2e-67 228.0 0.0 2.3e-67 227.8 0.0 1.0 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|336253767|ref|YP_004596874.1| - 2.1e-61 207.4 0.0 3.3e-61 206.8 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|336253767|ref|YP_004596874.1| - 2e-21 76.2 0.0 2.8e-21 75.7 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|336253767|ref|YP_004596874.1| - 7.8e-20 71.1 0.0 9.8e-20 70.8 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|336253767|ref|YP_004596874.1| - 1.1e-15 57.6 0.0 5.1e-15 55.4 0.0 1.8 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|336253767|ref|YP_004596874.1| - 5.5e-09 35.6 1.2 8.2e-08 31.7 1.2 2.3 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.6 gi|336253767|ref|YP_004596874.1| - 4.3e-07 30.0 0.0 2.9e-06 27.3 0.0 2.2 1 1 0 1 1 1 1 NAD(P)H-binding NmrA PF05368.13 gi|336253767|ref|YP_004596874.1| - 0.0016 18.1 0.0 0.0021 17.6 0.0 1.5 1 1 0 1 1 1 1 NmrA-like family KR PF08659.10 gi|336253767|ref|YP_004596874.1| - 0.0023 17.9 0.0 0.0059 16.5 0.0 1.7 1 1 0 1 1 1 1 KR domain adh_short PF00106.25 gi|336253767|ref|YP_004596874.1| - 0.0037 16.7 0.1 0.015 14.8 0.0 2.1 2 1 0 2 2 2 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|336253767|ref|YP_004596874.1| - 0.069 12.7 0.0 1.2 8.6 0.0 2.1 2 0 0 2 2 2 0 Enoyl-(Acyl carrier protein) reductase NTP_transferase PF00483.23 gi|336253768|ref|YP_004596875.1| - 1.2e-42 146.2 0.0 1.4e-42 146.0 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|336253768|ref|YP_004596875.1| - 8.7e-15 55.4 0.0 1e-14 55.2 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|336253768|ref|YP_004596875.1| - 2.2e-06 27.6 0.0 1.2e-05 25.2 0.0 1.9 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase oligo_HPY PF08352.12 gi|336253769|ref|YP_004596876.1| - 0.18 12.4 0.0 0.23 12.0 0.0 1.2 1 0 0 1 1 1 0 Oligopeptide/dipeptide transporter, C-terminal region Epimerase PF01370.21 gi|336253770|ref|YP_004596877.1| - 5.2e-47 160.3 0.3 6.1e-47 160.1 0.3 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|336253770|ref|YP_004596877.1| - 2e-41 142.5 0.2 7.5e-41 140.6 0.2 1.9 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|336253770|ref|YP_004596877.1| - 4.3e-12 45.7 0.2 5.8e-12 45.3 0.2 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.19 gi|336253770|ref|YP_004596877.1| - 5.8e-12 45.2 0.8 1.7e-11 43.7 0.8 1.8 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.15 gi|336253770|ref|YP_004596877.1| - 3e-09 36.4 0.0 3.6e-06 26.3 0.0 2.2 2 0 0 2 2 2 2 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|336253770|ref|YP_004596877.1| - 1.8e-08 33.9 0.1 1.5e-05 24.4 0.1 2.5 2 1 0 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.6 gi|336253770|ref|YP_004596877.1| - 0.0086 16.0 0.0 0.016 15.1 0.0 1.4 1 0 0 1 1 1 1 NAD(P)H-binding KR PF08659.10 gi|336253770|ref|YP_004596877.1| - 0.049 13.5 0.0 3 7.7 0.0 2.4 2 0 0 2 2 2 0 KR domain adh_short PF00106.25 gi|336253770|ref|YP_004596877.1| - 0.089 12.2 0.4 3.1 7.2 0.1 2.6 1 1 1 2 2 2 0 short chain dehydrogenase UDPG_MGDP_dh_N PF03721.14 gi|336253771|ref|YP_004596878.1| - 4.7e-51 173.0 0.1 8e-51 172.3 0.1 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 gi|336253771|ref|YP_004596878.1| - 1.7e-33 114.7 0.0 2.9e-33 113.9 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 gi|336253771|ref|YP_004596878.1| - 4.9e-26 91.2 0.0 1.4e-25 89.7 0.0 1.8 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_Gly3P_dh_N PF01210.23 gi|336253771|ref|YP_004596878.1| - 1.4e-05 25.1 0.0 5.6e-05 23.2 0.0 2.0 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.16 gi|336253771|ref|YP_004596878.1| - 2.8e-05 23.8 0.0 9.1e-05 22.1 0.0 1.8 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.18 gi|336253771|ref|YP_004596878.1| - 3.9e-05 23.6 0.1 7.6e-05 22.7 0.1 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox PF00070.27 gi|336253771|ref|YP_004596878.1| - 0.0004 20.9 1.0 0.0068 16.9 0.3 3.1 3 1 1 4 4 4 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 gi|336253771|ref|YP_004596878.1| - 0.0011 18.2 0.1 0.002 17.4 0.1 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase F420_oxidored PF03807.17 gi|336253771|ref|YP_004596878.1| - 0.0024 18.4 0.8 0.67 10.6 0.0 3.8 3 1 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent TrkA_N PF02254.18 gi|336253771|ref|YP_004596878.1| - 0.015 15.5 5.4 0.049 13.9 0.3 3.3 3 1 0 3 3 3 0 TrkA-N domain NAD_binding_8 PF13450.6 gi|336253771|ref|YP_004596878.1| - 0.034 14.4 0.1 0.11 12.7 0.1 2.0 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Rossmann-like PF10727.9 gi|336253771|ref|YP_004596878.1| - 0.045 13.6 0.3 0.13 12.1 0.3 1.9 1 0 0 1 1 1 0 Rossmann-like domain ThiS PF02597.20 gi|336253771|ref|YP_004596878.1| - 0.053 14.2 0.1 3.7 8.3 0.0 3.4 3 0 0 3 3 3 0 ThiS family DUF3320 PF11784.8 gi|336253771|ref|YP_004596878.1| - 0.054 13.5 0.3 0.17 11.9 0.3 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF3320) 2-Hacid_dh_C PF02826.19 gi|336253771|ref|YP_004596878.1| - 0.1 12.0 0.1 0.57 9.5 0.0 2.1 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Glycos_transf_2 PF00535.26 gi|336253772|ref|YP_004596879.1| - 1.6e-18 67.1 0.1 2.3e-18 66.6 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|336253772|ref|YP_004596879.1| - 2.2e-10 40.8 0.0 3.4e-10 40.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|336253772|ref|YP_004596879.1| - 0.0034 17.9 0.0 0.0071 16.8 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase family 2 UPF0060 PF02694.15 gi|336253772|ref|YP_004596879.1| - 0.0064 16.7 1.8 0.011 16.0 1.8 1.3 1 0 0 1 1 1 1 Uncharacterised BCR, YnfA/UPF0060 family CoA_binding_2 PF13380.6 gi|336253772|ref|YP_004596879.1| - 0.1 13.1 0.0 0.26 11.8 0.0 1.6 1 0 0 1 1 1 0 CoA binding domain CobD_Cbib PF03186.13 gi|336253772|ref|YP_004596879.1| - 0.11 11.6 0.0 0.18 11.0 0.0 1.2 1 0 0 1 1 1 0 CobD/Cbib protein RHH_1 PF01402.21 gi|336253774|ref|YP_004596881.1| - 0.00064 19.6 0.1 0.0011 18.8 0.0 1.5 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family PG_binding_2 PF08823.11 gi|336253774|ref|YP_004596881.1| - 0.083 13.2 0.1 0.19 12.0 0.1 1.6 2 0 0 2 2 2 0 Putative peptidoglycan binding domain SHOCT PF09851.9 gi|336253774|ref|YP_004596881.1| - 0.18 11.6 2.7 0.34 10.7 2.7 1.5 1 1 0 1 1 1 0 Short C-terminal domain Glyoxalase PF00903.25 gi|336253777|ref|YP_004596884.1| - 3.7e-10 40.1 0.1 4.1e-06 27.0 0.0 3.0 2 1 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 gi|336253777|ref|YP_004596884.1| - 1.9e-08 35.1 4.6 0.00037 21.3 0.8 2.2 2 0 0 2 2 2 2 Glyoxalase-like domain Glyoxalase_2 PF12681.7 gi|336253777|ref|YP_004596884.1| - 0.014 15.4 0.0 3.3 7.7 0.0 3.4 4 0 0 4 4 4 0 Glyoxalase-like domain DUF397 PF04149.12 gi|336253777|ref|YP_004596884.1| - 0.058 13.5 0.2 37 4.5 0.0 3.5 3 1 0 3 3 3 0 Domain of unknown function (DUF397) Acetyltransf_10 PF13673.7 gi|336253777|ref|YP_004596884.1| - 0.17 11.8 0.0 0.35 10.8 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain DUF892 PF05974.12 gi|336253778|ref|YP_004596885.1| - 3.5e-41 140.9 5.2 4.3e-41 140.6 5.2 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF892) Ferritin PF00210.24 gi|336253778|ref|YP_004596885.1| - 0.0011 19.0 9.1 0.0032 17.4 9.1 1.9 1 1 0 1 1 1 1 Ferritin-like domain TraB PF01963.17 gi|336253778|ref|YP_004596885.1| - 0.021 14.8 1.7 0.028 14.3 1.7 1.2 1 0 0 1 1 1 0 TraB family DUF4142 PF13628.6 gi|336253778|ref|YP_004596885.1| - 0.034 14.4 4.9 0.12 12.6 0.3 2.6 2 1 1 3 3 3 0 Domain of unknown function (DUF4142) Vir_act_alpha_C PF10400.9 gi|336253778|ref|YP_004596885.1| - 0.088 13.5 2.4 8.8 7.1 1.0 2.4 2 1 0 2 2 2 0 Virulence activator alpha C-term Rubrerythrin PF02915.17 gi|336253778|ref|YP_004596885.1| - 0.095 13.1 4.8 0.15 12.4 4.5 1.5 1 1 0 1 1 1 0 Rubrerythrin FKBP_N PF01346.18 gi|336253778|ref|YP_004596885.1| - 0.45 11.5 5.3 0.4 11.7 1.2 2.3 1 1 2 3 3 3 0 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase MerR-DNA-bind PF09278.11 gi|336253778|ref|YP_004596885.1| - 0.64 10.6 3.3 0.49 11.0 0.7 2.0 2 0 0 2 2 2 0 MerR, DNA binding CHIP_TPR_N PF18391.1 gi|336253778|ref|YP_004596885.1| - 0.81 10.5 6.2 0.14 12.9 1.4 2.0 2 1 0 2 2 2 0 CHIP N-terminal tetratricopeptide repeat domain CdiI_2 PF18593.1 gi|336253778|ref|YP_004596885.1| - 2.2 9.0 8.5 52 4.6 0.2 3.2 1 1 2 3 3 3 0 CdiI immunity protein DUF4337 PF14235.6 gi|336253778|ref|YP_004596885.1| - 3 7.9 4.9 16 5.6 4.9 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4337) DUF3188 PF11384.8 gi|336253779|ref|YP_004596886.1| - 0.043 13.5 0.3 1.6 8.5 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3188) DUF2892 PF11127.8 gi|336253779|ref|YP_004596886.1| - 0.066 13.3 0.7 0.078 13.0 0.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2892) DUF4131 PF13567.6 gi|336253779|ref|YP_004596886.1| - 0.13 11.9 2.5 0.15 11.7 2.5 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) Ferritin PF00210.24 gi|336253781|ref|YP_004596888.1| - 1.7e-24 86.4 0.5 2e-24 86.2 0.5 1.0 1 0 0 1 1 1 1 Ferritin-like domain Rubrerythrin PF02915.17 gi|336253781|ref|YP_004596888.1| - 1.7e-10 41.5 0.1 1.9e-10 41.3 0.1 1.0 1 0 0 1 1 1 1 Rubrerythrin DUF4439 PF14530.6 gi|336253781|ref|YP_004596888.1| - 0.00013 22.6 0.1 0.00021 22.0 0.1 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF4439) DUF892 PF05974.12 gi|336253781|ref|YP_004596888.1| - 0.00055 20.0 2.0 0.0015 18.6 2.0 1.8 1 1 0 1 1 1 1 Domain of unknown function (DUF892) Ferritin_2 PF13668.6 gi|336253781|ref|YP_004596888.1| - 0.0028 17.8 0.1 0.0038 17.4 0.1 1.3 1 0 0 1 1 1 1 Ferritin-like domain Ferritin-like PF12902.7 gi|336253781|ref|YP_004596888.1| - 0.0052 16.7 0.0 0.0059 16.5 0.0 1.1 1 0 0 1 1 1 1 Ferritin-like DUF2383 PF09537.10 gi|336253781|ref|YP_004596888.1| - 0.0055 17.0 0.8 2.7 8.4 0.1 2.3 2 1 0 2 2 2 2 Domain of unknown function (DUF2383) GatB_Yqey PF02637.18 gi|336253781|ref|YP_004596888.1| - 0.045 13.6 0.3 0.11 12.3 0.2 1.8 1 1 0 1 1 1 0 GatB domain T3SSipB PF16535.5 gi|336253781|ref|YP_004596888.1| - 0.063 13.7 0.3 0.082 13.4 0.3 1.3 1 0 0 1 1 1 0 Type III cell invasion protein SipB DUF349 PF03993.12 gi|336253781|ref|YP_004596888.1| - 0.076 13.3 0.4 3.4 8.0 0.0 2.2 2 0 0 2 2 2 0 Domain of Unknown Function (DUF349) HMGL-like PF00682.19 gi|336253782|ref|YP_004596889.1| - 3.9e-82 275.7 6.6 6.4e-82 275.1 6.6 1.3 1 0 0 1 1 1 1 HMGL-like AP_endonuc_2 PF01261.24 gi|336253782|ref|YP_004596889.1| - 0.0074 15.7 0.5 0.027 13.9 0.1 2.2 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel TPP_enzyme_N PF02776.18 gi|336253783|ref|YP_004596890.1| - 5.8e-52 175.8 0.6 3.2e-51 173.4 0.2 2.4 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|336253783|ref|YP_004596890.1| - 5.3e-50 169.2 1.8 1e-49 168.2 0.1 2.4 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|336253783|ref|YP_004596890.1| - 7.1e-46 155.4 0.1 2.6e-45 153.5 0.0 2.0 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, central domain CO_dh PF02552.16 gi|336253783|ref|YP_004596890.1| - 0.0018 18.1 0.0 0.0032 17.3 0.0 1.3 1 0 0 1 1 1 1 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit ALS_ss_C PF10369.9 gi|336253784|ref|YP_004596891.1| - 5.3e-21 74.6 0.1 9e-21 73.9 0.1 1.4 1 0 0 1 1 1 1 Small subunit of acetolactate synthase ACT_5 PF13710.6 gi|336253784|ref|YP_004596891.1| - 1.8e-14 53.3 0.0 3.1e-14 52.6 0.0 1.4 1 0 0 1 1 1 1 ACT domain ACT PF01842.25 gi|336253784|ref|YP_004596891.1| - 6.3e-14 51.5 0.1 1.6e-13 50.2 0.0 1.7 2 0 0 2 2 2 1 ACT domain ACT_4 PF13291.6 gi|336253784|ref|YP_004596891.1| - 0.0061 17.1 0.0 0.012 16.2 0.0 1.4 1 0 0 1 1 1 1 ACT domain SbcD_C PF12320.8 gi|336253784|ref|YP_004596891.1| - 0.031 14.6 0.2 0.22 11.8 0.1 2.1 2 0 0 2 2 2 0 Type 5 capsule protein repressor C-terminal domain IlvN PF07991.12 gi|336253785|ref|YP_004596892.1| - 9.4e-71 236.7 0.0 1.4e-70 236.1 0.0 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain IlvC PF01450.19 gi|336253785|ref|YP_004596892.1| - 1.9e-63 213.1 0.5 2.6e-63 212.6 0.5 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain 2-Hacid_dh_C PF02826.19 gi|336253785|ref|YP_004596892.1| - 2.3e-05 23.9 0.0 4.2e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|336253785|ref|YP_004596892.1| - 5.8e-05 23.3 0.0 0.00011 22.5 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|336253785|ref|YP_004596892.1| - 0.00011 22.7 0.0 0.00024 21.6 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.16 gi|336253785|ref|YP_004596892.1| - 0.0028 17.3 0.1 0.0052 16.4 0.1 1.5 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Mur_ligase PF01225.25 gi|336253785|ref|YP_004596892.1| - 0.013 15.8 0.1 0.031 14.6 0.1 1.7 1 0 0 1 1 1 0 Mur ligase family, catalytic domain Aconitase PF00330.20 gi|336253787|ref|YP_004596894.1| - 5.7e-146 487.2 0.0 6.4e-146 487.0 0.0 1.0 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) DUF521 PF04412.13 gi|336253787|ref|YP_004596894.1| - 0.00054 18.8 0.0 0.001 17.9 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF521) DUF3944 PF13099.6 gi|336253787|ref|YP_004596894.1| - 0.11 12.4 0.0 0.29 11.1 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF3944) Aconitase_C PF00694.19 gi|336253788|ref|YP_004596895.1| - 1.3e-19 70.9 0.0 2.1e-19 70.2 0.0 1.3 1 0 0 1 1 1 1 Aconitase C-terminal domain HMG-CoA_red PF00368.18 gi|336253788|ref|YP_004596895.1| - 0.094 11.7 0.0 0.14 11.2 0.0 1.3 1 0 0 1 1 1 0 Hydroxymethylglutaryl-coenzyme A reductase VWA_2 PF13519.6 gi|336253789|ref|YP_004596896.1| - 5.6e-13 49.5 0.0 1.1e-12 48.5 0.0 1.5 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA PF00092.28 gi|336253789|ref|YP_004596896.1| - 1.4e-12 48.3 0.2 3.2e-12 47.1 0.2 1.6 1 1 0 1 1 1 1 von Willebrand factor type A domain VWA_3 PF13768.6 gi|336253789|ref|YP_004596896.1| - 8.5e-09 35.5 0.4 7.5e-08 32.5 0.0 2.1 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA_CoxE PF05762.14 gi|336253789|ref|YP_004596896.1| - 0.011 15.1 0.2 0.89 8.9 0.0 2.3 2 0 0 2 2 2 0 VWA domain containing CoxE-like protein Peptidase_S8 PF00082.22 gi|336253790|ref|YP_004596897.1| - 1.8e-35 122.7 5.7 5.2e-35 121.1 5.7 1.8 1 1 0 1 1 1 1 Subtilase family CarboxypepD_reg PF13620.6 gi|336253790|ref|YP_004596897.1| - 9e-33 112.4 26.5 4.2e-18 65.4 3.8 3.8 3 0 0 3 3 3 3 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|336253790|ref|YP_004596897.1| - 7.4e-17 61.1 3.7 6.9e-11 42.0 0.3 3.4 1 1 2 3 3 3 2 CarboxypepD_reg-like domain PEGA PF08308.11 gi|336253790|ref|YP_004596897.1| - 1e-06 28.5 0.3 0.055 13.4 0.1 3.7 4 0 0 4 4 4 2 PEGA domain Big_1 PF02369.16 gi|336253790|ref|YP_004596897.1| - 2.7e-06 27.3 9.5 0.00051 20.0 1.5 4.0 3 0 0 3 3 3 2 Bacterial Ig-like domain (group 1) bMG3 PF11974.8 gi|336253790|ref|YP_004596897.1| - 7.1e-05 22.8 2.9 0.0043 17.1 0.2 2.7 2 0 0 2 2 2 1 Bacterial alpha-2-macroglobulin MG3 domain DUF4249 PF14054.6 gi|336253790|ref|YP_004596897.1| - 0.00027 20.7 7.0 0.064 12.9 0.5 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF4249) MG4 PF17789.1 gi|336253790|ref|YP_004596897.1| - 0.0004 20.5 0.4 0.026 14.7 0.1 2.8 2 0 0 2 2 2 1 Macroglobulin domain MG4 DUF3869 PF12985.7 gi|336253790|ref|YP_004596897.1| - 0.004 17.5 15.8 0.048 14.0 1.9 4.1 1 1 2 3 3 3 2 Domain of unknown function (DUF3869) DUF824 PF05688.11 gi|336253790|ref|YP_004596897.1| - 0.015 15.1 2.7 3.5 7.5 0.1 3.1 3 0 0 3 3 3 0 Salmonella repeat of unknown function (DUF824) SdrD_B PF17210.3 gi|336253790|ref|YP_004596897.1| - 0.086 13.1 10.4 0.23 11.7 1.4 3.3 1 1 1 3 3 3 0 SdrD B-like domain YtkA PF13115.6 gi|336253790|ref|YP_004596897.1| - 1.6 9.4 5.0 8.7 7.0 0.1 3.6 3 2 0 3 3 3 0 YtkA-like Iso_dh PF00180.20 gi|336253791|ref|YP_004596898.1| - 2.6e-89 299.8 0.0 3.2e-89 299.5 0.0 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Glyco_hydro_3_C PF01915.22 gi|336253792|ref|YP_004596899.1| - 1.2e-58 198.5 0.0 3.2e-58 197.1 0.0 1.7 1 1 0 1 1 1 1 Glycosyl hydrolase family 3 C-terminal domain Glyco_hydro_3 PF00933.21 gi|336253792|ref|YP_004596899.1| - 5e-52 177.2 0.0 3.8e-51 174.4 0.0 1.9 2 0 0 2 2 2 1 Glycosyl hydrolase family 3 N terminal domain Fn3-like PF14310.6 gi|336253792|ref|YP_004596899.1| - 1.4e-18 66.7 0.1 2.9e-18 65.7 0.1 1.6 1 0 0 1 1 1 1 Fibronectin type III-like domain TP_methylase PF00590.20 gi|336253793|ref|YP_004596900.1| - 1.6e-22 80.5 3.1 2e-22 80.2 3.1 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Ribonuc_L-PSP PF01042.21 gi|336253794|ref|YP_004596901.1| - 2.8e-28 98.4 0.1 3.2e-28 98.2 0.1 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP Rieske PF00355.26 gi|336253795|ref|YP_004596902.1| - 4.1e-07 29.8 0.1 5.4e-07 29.5 0.1 1.3 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Met_10 PF02475.16 gi|336253796|ref|YP_004596903.1| - 1.4e-56 191.5 0.0 1.8e-56 191.1 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Trm5_N PF18093.1 gi|336253796|ref|YP_004596903.1| - 1.3e-13 50.5 0.0 3.5e-13 49.2 0.0 1.7 1 0 0 1 1 1 1 tRNA methyltransferase 5 N-terminal domain Methyltransf_25 PF13649.6 gi|336253796|ref|YP_004596903.1| - 6.9e-07 29.9 0.0 2.3e-06 28.2 0.0 1.9 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|336253796|ref|YP_004596903.1| - 3e-06 26.9 0.0 4.2e-06 26.4 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_11 PF08241.12 gi|336253796|ref|YP_004596903.1| - 2.5e-05 24.8 0.0 6.7e-05 23.5 0.0 1.8 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|336253796|ref|YP_004596903.1| - 0.00014 21.7 0.0 0.00023 21.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|336253796|ref|YP_004596903.1| - 0.00048 19.6 0.0 0.00073 19.0 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) MTS PF05175.14 gi|336253796|ref|YP_004596903.1| - 0.0015 18.1 0.0 0.003 17.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_23 PF13489.6 gi|336253796|ref|YP_004596903.1| - 0.0021 17.9 0.1 0.0071 16.2 0.1 1.7 1 1 1 2 2 2 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|336253796|ref|YP_004596903.1| - 0.0065 16.1 0.0 0.012 15.2 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical protein 95 UPF0020 PF01170.18 gi|336253796|ref|YP_004596903.1| - 0.0093 15.7 0.0 0.016 14.9 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_12 PF08242.12 gi|336253796|ref|YP_004596903.1| - 0.13 13.1 0.0 0.39 11.5 0.0 1.9 2 0 0 2 2 2 0 Methyltransferase domain DNA_methylase PF00145.17 gi|336253796|ref|YP_004596903.1| - 0.14 11.4 0.0 0.22 10.9 0.0 1.2 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase Methyltransf_18 PF12847.7 gi|336253796|ref|YP_004596903.1| - 0.22 11.4 0.0 0.38 10.7 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain CbiQ PF02361.16 gi|336253797|ref|YP_004596904.1| - 3.2e-19 69.4 5.2 4.1e-19 69.1 5.2 1.2 1 0 0 1 1 1 1 Cobalt transport protein ABC_tran PF00005.27 gi|336253798|ref|YP_004596905.1| - 5.5e-30 104.7 0.0 7.2e-30 104.3 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|336253798|ref|YP_004596905.1| - 1.1e-09 38.6 0.1 0.00062 19.7 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|336253798|ref|YP_004596905.1| - 8.5e-05 22.1 0.0 0.00047 19.7 0.0 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|336253798|ref|YP_004596905.1| - 0.00011 22.6 0.2 0.00017 22.0 0.2 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|336253798|ref|YP_004596905.1| - 0.00035 20.3 0.1 0.00058 19.5 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain SbcCD_C PF13558.6 gi|336253798|ref|YP_004596905.1| - 0.00042 20.5 0.2 0.005 17.0 0.2 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.6 gi|336253798|ref|YP_004596905.1| - 0.0028 18.2 0.0 0.0038 17.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|336253798|ref|YP_004596905.1| - 0.0095 15.2 0.0 0.016 14.5 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin AAA_25 PF13481.6 gi|336253798|ref|YP_004596905.1| - 0.012 15.1 2.7 0.055 13.0 0.0 2.6 2 1 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|336253798|ref|YP_004596905.1| - 0.015 15.1 0.0 0.031 14.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|336253798|ref|YP_004596905.1| - 0.026 14.5 0.1 0.044 13.7 0.1 1.3 1 0 0 1 1 1 0 NACHT domain T2SSE PF00437.20 gi|336253798|ref|YP_004596905.1| - 0.027 13.5 0.5 0.079 12.0 0.0 1.9 3 0 0 3 3 3 0 Type II/IV secretion system protein cobW PF02492.19 gi|336253798|ref|YP_004596905.1| - 0.033 13.8 0.1 0.062 12.9 0.1 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_22 PF13401.6 gi|336253798|ref|YP_004596905.1| - 0.041 14.2 0.2 0.078 13.2 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|336253798|ref|YP_004596905.1| - 0.054 13.7 0.1 0.12 12.6 0.0 1.8 2 0 0 2 2 1 0 AAA domain AAA_33 PF13671.6 gi|336253798|ref|YP_004596905.1| - 0.068 13.3 0.4 0.11 12.6 0.4 1.8 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|336253798|ref|YP_004596905.1| - 0.11 12.2 0.0 0.15 11.8 0.0 1.1 1 0 0 1 1 1 0 AAA ATPase domain AAA_5 PF07728.14 gi|336253798|ref|YP_004596905.1| - 0.14 12.2 0.1 0.4 10.7 0.0 1.8 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.21 gi|336253798|ref|YP_004596905.1| - 0.14 11.5 0.0 0.22 10.9 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI DUF3584 PF12128.8 gi|336253798|ref|YP_004596905.1| - 0.16 9.4 0.0 0.21 9.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) RsgA_GTPase PF03193.16 gi|336253798|ref|YP_004596905.1| - 0.17 11.8 0.0 0.3 11.0 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase TsaE PF02367.17 gi|336253798|ref|YP_004596905.1| - 0.2 11.7 0.0 0.33 10.9 0.0 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE BioY PF02632.14 gi|336253799|ref|YP_004596906.1| - 1.7e-38 131.7 20.3 2.7e-38 131.1 20.3 1.2 1 0 0 1 1 1 1 BioY family DUF2269 PF10027.9 gi|336253799|ref|YP_004596906.1| - 0.013 15.6 0.9 0.013 15.6 0.9 2.3 2 0 0 2 2 2 0 Predicted integral membrane protein (DUF2269) ECF_trnsprt PF12822.7 gi|336253799|ref|YP_004596906.1| - 0.035 14.2 24.4 0.058 13.5 24.4 1.3 1 1 0 1 1 1 0 ECF transporter, substrate-specific component CARDB PF07705.11 gi|336253800|ref|YP_004596907.1| - 1.3e-06 28.5 5.4 6.9e-06 26.3 2.5 3.5 2 0 0 2 2 2 1 CARDB EMP24_GP25L PF01105.24 gi|336253800|ref|YP_004596907.1| - 0.00051 20.0 0.2 13 5.6 0.0 4.4 4 0 0 4 4 4 2 emp24/gp25L/p24 family/GOLD DUF4981 PF16353.5 gi|336253800|ref|YP_004596907.1| - 0.17 12.4 9.7 3 8.4 0.2 5.2 4 1 1 5 5 5 0 Domain of unknown function(DUF4981) DUF2536 PF10750.9 gi|336253800|ref|YP_004596907.1| - 0.18 11.7 1.0 2.3 8.2 0.1 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2536) VAPB_antitox PF02697.14 gi|336253802|ref|YP_004596909.1| - 0.0011 19.6 0.7 0.0011 19.6 0.7 1.0 1 0 0 1 1 1 1 Putative antitoxin RHH_1 PF01402.21 gi|336253802|ref|YP_004596909.1| - 0.029 14.3 3.3 0.1 12.6 1.3 2.0 1 1 1 2 2 2 0 Ribbon-helix-helix protein, copG family Chorion_3 PF05387.11 gi|336253803|ref|YP_004596910.1| - 0.083 12.5 5.0 0.089 12.4 5.0 1.1 1 0 0 1 1 1 0 Chorion family 3 Serglycin PF04360.12 gi|336253803|ref|YP_004596910.1| - 0.22 11.4 7.4 0.16 11.9 2.0 2.2 1 1 1 2 2 2 0 Serglycin Tubulin PF00091.25 gi|336253803|ref|YP_004596910.1| - 0.44 10.7 4.9 1.5 8.9 1.1 2.1 1 1 1 2 2 2 0 Tubulin/FtsZ family, GTPase domain Hexapep PF00132.24 gi|336253804|ref|YP_004596911.1| - 1.4e-17 62.6 2.6 2.5e-06 27.0 0.3 3.4 2 1 1 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|336253804|ref|YP_004596911.1| - 5e-07 29.4 4.2 6.2e-06 25.9 0.4 3.0 3 0 0 3 3 3 2 Hexapeptide repeat of succinyl-transferase Lactamase_B PF00753.27 gi|336253805|ref|YP_004596912.1| - 1.2e-11 45.1 13.4 2.8e-11 43.8 10.0 2.8 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|336253805|ref|YP_004596912.1| - 1.4e-05 24.7 1.0 2.7e-05 23.8 1.0 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|336253805|ref|YP_004596912.1| - 0.0028 17.1 0.0 0.0059 16.1 0.0 1.5 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain OsmC PF02566.19 gi|336253806|ref|YP_004596913.1| - 6.2e-11 42.7 0.0 8.1e-11 42.3 0.0 1.2 1 0 0 1 1 1 1 OsmC-like protein YdjM PF04307.14 gi|336253807|ref|YP_004596914.1| - 1.6e-12 47.1 11.5 2.3e-12 46.6 11.5 1.3 1 0 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase Voltage_CLC PF00654.20 gi|336253807|ref|YP_004596914.1| - 0.0048 16.2 3.0 0.006 15.9 3.0 1.2 1 0 0 1 1 1 1 Voltage gated chloride channel DUF2227 PF09988.9 gi|336253807|ref|YP_004596914.1| - 0.028 14.3 0.4 0.058 13.3 0.2 1.6 1 1 0 1 1 1 0 Uncharacterized metal-binding protein (DUF2227) DUF1614 PF07758.11 gi|336253807|ref|YP_004596914.1| - 0.053 13.5 0.9 0.065 13.2 0.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1614) Lactamase_B_3 PF13483.6 gi|336253808|ref|YP_004596915.1| - 1e-18 67.7 0.9 1.7e-18 67.1 0.9 1.3 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|336253808|ref|YP_004596915.1| - 1.1e-14 54.4 1.3 1.6e-14 53.9 1.3 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|336253808|ref|YP_004596915.1| - 2.1e-07 31.2 3.8 2.1e-07 31.2 3.8 1.9 1 1 0 2 2 2 1 Metallo-beta-lactamase superfamily Ribosomal_L12_N PF16320.5 gi|336253808|ref|YP_004596915.1| - 0.031 14.0 0.0 0.11 12.2 0.0 1.9 2 0 0 2 2 2 0 Ribosomal protein L7/L12 dimerisation domain tRNA_anti-codon PF01336.25 gi|336253809|ref|YP_004596916.1| - 0.098 12.7 0.1 0.21 11.6 0.1 1.7 1 1 0 1 1 1 0 OB-fold nucleic acid binding domain Complex1_LYR_2 PF13233.6 gi|336253809|ref|YP_004596916.1| - 0.11 13.2 0.0 0.12 13.1 0.0 1.1 1 0 0 1 1 1 0 Complex1_LYR-like tRNA_anti-codon PF01336.25 gi|336253810|ref|YP_004596917.1| - 4e-11 42.8 0.1 1.1e-10 41.3 0.1 1.9 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain S1 PF00575.23 gi|336253810|ref|YP_004596917.1| - 1.9e-08 34.5 0.0 5.7e-08 33.0 0.0 1.9 1 0 0 1 1 1 1 S1 RNA binding domain tRNA_anti_2 PF13742.6 gi|336253810|ref|YP_004596917.1| - 5.8e-05 23.2 0.0 0.00014 22.0 0.0 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain S1_2 PF13509.6 gi|336253810|ref|YP_004596917.1| - 0.0092 16.0 0.0 0.029 14.4 0.0 1.9 1 0 0 1 1 1 1 S1 domain SHOCT PF09851.9 gi|336253811|ref|YP_004596918.1| - 2.2e-09 36.8 5.0 4.1e-09 35.9 5.0 1.5 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.11 gi|336253811|ref|YP_004596918.1| - 4e-06 26.8 7.2 8.5e-06 25.7 7.2 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1707) GvpG PF05120.12 gi|336253811|ref|YP_004596918.1| - 0.035 14.1 0.9 0.035 14.1 0.9 1.5 2 0 0 2 2 2 0 Gas vesicle protein G DUF2631 PF10939.8 gi|336253811|ref|YP_004596918.1| - 0.15 11.9 0.1 0.37 10.7 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2631) PhaG_MnhG_YufB PF03334.14 gi|336253812|ref|YP_004596919.1| - 8.6e-25 86.8 7.1 1.1e-24 86.5 7.1 1.1 1 0 0 1 1 1 1 Na+/H+ antiporter subunit MrpF_PhaF PF04066.13 gi|336253813|ref|YP_004596920.1| - 6.7e-18 64.8 8.9 6.7e-18 64.8 8.9 1.9 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) DUF5336 PF17270.2 gi|336253813|ref|YP_004596920.1| - 0.12 11.9 5.9 0.14 11.8 5.9 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5336) IncF PF17626.2 gi|336253813|ref|YP_004596920.1| - 0.18 12.2 5.2 0.13 12.6 3.5 1.6 1 1 0 1 1 1 0 Inclusion membrane protein F MNHE PF01899.16 gi|336253814|ref|YP_004596921.1| - 2.8e-37 127.7 0.6 3.5e-37 127.4 0.6 1.1 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit Proton_antipo_M PF00361.20 gi|336253815|ref|YP_004596922.1| - 1.7e-51 175.2 19.0 1.1e-25 90.4 5.0 2.6 2 0 0 2 2 2 2 Proton-conducting membrane transporter NADHdeh_related PF10125.9 gi|336253815|ref|YP_004596922.1| - 0.00063 19.2 2.8 0.00063 19.2 2.8 3.0 3 0 0 3 3 3 2 NADH dehydrogenase I, subunit N related protein Proton_antipo_N PF00662.20 gi|336253815|ref|YP_004596922.1| - 0.0042 17.1 0.3 0.014 15.4 0.3 1.9 1 0 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q2 PF00420.24 gi|336253816|ref|YP_004596923.1| - 3.1e-30 103.9 1.2 3.7e-30 103.6 1.2 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Herpes_glycop PF01528.16 gi|336253816|ref|YP_004596923.1| - 0.091 11.6 0.3 0.11 11.3 0.3 1.1 1 0 0 1 1 1 0 Herpesvirus glycoprotein M Phage_holin_2_3 PF16080.5 gi|336253816|ref|YP_004596923.1| - 0.18 11.5 0.9 8.1 6.3 0.2 2.4 2 0 0 2 2 2 0 Bacteriophage holin family HP1 MnhB PF04039.13 gi|336253817|ref|YP_004596924.1| - 1e-35 122.7 7.8 1.3e-35 122.4 7.8 1.1 1 0 0 1 1 1 1 Domain related to MnhB subunit of Na+/H+ antiporter Proton_antipo_M PF00361.20 gi|336253818|ref|YP_004596925.1| - 1.1e-69 234.9 16.0 1.1e-69 234.9 16.0 2.6 3 1 0 3 3 3 1 Proton-conducting membrane transporter DUF4040 PF13244.6 gi|336253818|ref|YP_004596925.1| - 4e-15 55.7 11.1 4e-15 55.7 11.1 5.4 4 1 1 5 5 5 1 Domain of unknown function (DUF4040) Proton_antipo_N PF00662.20 gi|336253818|ref|YP_004596925.1| - 4.2e-12 45.9 0.9 4.2e-12 45.9 0.9 2.8 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q3 PF00499.20 gi|336253818|ref|YP_004596925.1| - 0.0025 17.5 7.5 0.0025 17.5 7.5 5.7 3 2 0 4 4 4 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 Radical_SAM PF04055.21 gi|336253819|ref|YP_004596926.1| - 7.9e-27 94.7 0.1 9e-26 91.2 0.0 2.3 2 0 0 2 2 2 1 Radical SAM superfamily Radical_SAM_C PF16199.5 gi|336253819|ref|YP_004596926.1| - 1.4e-24 85.9 0.0 2.4e-24 85.1 0.0 1.4 1 0 0 1 1 1 1 Radical_SAM C-terminal domain Acetyltransf_1 PF00583.25 gi|336253819|ref|YP_004596926.1| - 2.6e-09 37.4 0.0 6.4e-09 36.1 0.0 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|336253819|ref|YP_004596926.1| - 1.4e-05 25.1 0.2 3e-05 24.0 0.2 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|336253819|ref|YP_004596926.1| - 0.08 13.4 0.1 0.17 12.3 0.1 1.5 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Glyco_hydro_43 PF04616.14 gi|336253820|ref|YP_004596927.1| - 3.9e-09 36.2 0.1 5.8e-09 35.7 0.1 1.3 1 0 0 1 1 1 1 Glycosyl hydrolases family 43 HpcH_HpaI PF03328.14 gi|336253822|ref|YP_004596929.1| - 5.6e-45 153.2 0.7 6.7e-45 152.9 0.7 1.0 1 0 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family LUD_dom PF02589.15 gi|336253823|ref|YP_004596930.1| - 6.3e-28 97.8 0.2 7.7e-28 97.5 0.2 1.1 1 0 0 1 1 1 1 LUD domain Zip PF02535.22 gi|336253824|ref|YP_004596931.1| - 1.1e-16 61.0 3.0 1.1e-16 61.0 3.0 2.1 2 0 0 2 2 2 2 ZIP Zinc transporter FbpA PF05833.11 gi|336253827|ref|YP_004596934.1| - 4.8e-82 276.1 0.0 6.6e-82 275.7 0.0 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) NFACT-R_1 PF05670.13 gi|336253827|ref|YP_004596934.1| - 1.5e-22 80.3 0.0 2.9e-22 79.4 0.0 1.5 1 0 0 1 1 1 1 NFACT protein RNA binding domain NFACT-R_2 PF18297.1 gi|336253827|ref|YP_004596934.1| - 0.00028 21.0 0.0 0.0018 18.5 0.0 2.4 2 1 0 2 2 2 1 NFACT protein RNA binding domain DUF2786 PF10979.8 gi|336253827|ref|YP_004596934.1| - 0.012 15.5 0.1 0.061 13.2 0.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2786) LEDGF PF11467.8 gi|336253827|ref|YP_004596934.1| - 0.093 12.4 0.7 3 7.5 0.0 2.9 2 1 1 3 3 3 0 Lens epithelium-derived growth factor (LEDGF) DUF5590 PF17881.1 gi|336253827|ref|YP_004596934.1| - 0.16 12.1 0.1 0.67 10.1 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF5590) MFS_1 PF07690.16 gi|336253829|ref|YP_004596936.1| - 8.3e-40 136.8 76.2 6.9e-31 107.5 45.5 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|336253829|ref|YP_004596936.1| - 2.4e-05 23.4 22.5 5.1e-05 22.3 12.2 2.2 1 1 1 2 2 2 2 MFS_1 like family Colicin PF01024.19 gi|336253830|ref|YP_004596937.1| - 0.038 13.9 6.7 0.87 9.5 0.7 2.1 2 0 0 2 2 2 0 Colicin pore forming domain eRF1_1 PF03463.15 gi|336253831|ref|YP_004596938.1| - 1.9e-24 86.1 0.1 3.2e-24 85.4 0.1 1.3 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.15 gi|336253831|ref|YP_004596938.1| - 1.3e-23 83.6 0.5 3.6e-23 82.2 0.0 2.0 3 0 0 3 3 3 1 eRF1 domain 3 eRF1_2 PF03464.15 gi|336253831|ref|YP_004596938.1| - 1e-08 35.6 0.2 3.2e-07 30.7 0.2 2.3 1 1 0 1 1 1 1 eRF1 domain 2 Tetraspanin PF00335.20 gi|336253832|ref|YP_004596939.1| - 0.38 10.4 1.0 0.56 9.9 1.0 1.3 1 0 0 1 1 1 0 Tetraspanin family TrmB PF01978.19 gi|336253833|ref|YP_004596940.1| - 1.8e-19 69.3 0.0 3.4e-19 68.5 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|336253833|ref|YP_004596940.1| - 0.00052 19.8 0.0 0.00091 19.0 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain DUF2250 PF10007.9 gi|336253833|ref|YP_004596940.1| - 0.00059 19.9 0.0 0.0011 19.0 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) MarR_2 PF12802.7 gi|336253833|ref|YP_004596940.1| - 0.00087 19.1 0.0 0.0021 17.9 0.0 1.6 1 0 0 1 1 1 1 MarR family Penicillinase_R PF03965.16 gi|336253833|ref|YP_004596940.1| - 0.013 15.8 0.1 0.038 14.3 0.0 1.8 2 0 0 2 2 2 0 Penicillinase repressor HTH_27 PF13463.6 gi|336253833|ref|YP_004596940.1| - 0.019 15.5 0.0 0.09 13.3 0.0 2.2 2 0 0 2 2 2 0 Winged helix DNA-binding domain Cdc6_C PF09079.11 gi|336253833|ref|YP_004596940.1| - 0.036 14.0 0.0 0.18 11.8 0.0 2.1 2 0 0 2 2 2 0 CDC6, C terminal winged helix domain HTH_20 PF12840.7 gi|336253833|ref|YP_004596940.1| - 0.053 13.6 0.0 0.16 12.1 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain MarR PF01047.22 gi|336253833|ref|YP_004596940.1| - 0.058 13.3 0.1 0.17 11.8 0.0 1.8 2 0 0 2 2 2 0 MarR family MMPL PF03176.15 gi|336253834|ref|YP_004596941.1| - 8e-29 100.6 44.7 2.1e-17 63.1 18.8 3.7 2 2 0 2 2 2 2 MMPL family Sterol-sensing PF12349.8 gi|336253834|ref|YP_004596941.1| - 1.8e-05 24.6 14.9 0.0039 17.0 2.8 2.3 2 0 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation Patched PF02460.18 gi|336253834|ref|YP_004596941.1| - 5.4e-05 21.5 32.6 0.00083 17.6 8.8 3.2 3 0 0 3 3 3 2 Patched family SecD_SecF PF02355.16 gi|336253834|ref|YP_004596941.1| - 0.00082 18.8 8.6 0.00082 18.8 8.6 2.5 2 0 0 2 2 2 1 Protein export membrane protein ACR_tran PF00873.19 gi|336253834|ref|YP_004596941.1| - 0.045 11.4 25.9 0.016 12.9 10.0 2.2 2 0 0 2 2 2 0 AcrB/AcrD/AcrF family RseC_MucC PF04246.12 gi|336253834|ref|YP_004596941.1| - 0.087 12.8 12.0 1.5 8.8 2.2 3.5 2 1 1 3 3 3 0 Positive regulator of sigma(E), RseC/MucC BLOC1_2 PF10046.9 gi|336253834|ref|YP_004596941.1| - 0.35 11.2 8.4 18 5.7 1.0 3.7 3 0 0 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Formyl_trans_N PF00551.19 gi|336253835|ref|YP_004596942.1| - 3.6e-09 36.6 0.0 4.8e-09 36.2 0.0 1.2 1 0 0 1 1 1 1 Formyl transferase Lactamase_B_2 PF12706.7 gi|336253836|ref|YP_004596943.1| - 2.2e-15 56.7 0.3 2.7e-15 56.4 0.3 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|336253836|ref|YP_004596943.1| - 2.6e-14 53.7 3.0 2.6e-14 53.7 3.0 1.7 1 1 1 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|336253836|ref|YP_004596943.1| - 0.033 14.1 0.0 0.059 13.3 0.0 1.5 1 0 0 1 1 1 0 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|336253836|ref|YP_004596943.1| - 0.041 13.3 0.0 0.066 12.6 0.0 1.2 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain PDEase_II PF02112.15 gi|336253836|ref|YP_004596943.1| - 0.3 10.2 0.3 0.44 9.6 0.3 1.2 1 0 0 1 1 1 0 cAMP phosphodiesterases class-II Bac_rhodopsin PF01036.18 gi|336253837|ref|YP_004596944.1| - 1.6e-58 197.9 22.4 1.8e-58 197.8 22.4 1.0 1 0 0 1 1 1 1 Bacteriorhodopsin-like protein MCPsignal PF00015.21 gi|336253838|ref|YP_004596945.1| - 4.3e-40 137.3 59.0 5.7e-39 133.7 26.8 4.2 2 1 2 4 4 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain Htr2 PF17909.1 gi|336253838|ref|YP_004596945.1| - 2e-30 104.9 20.3 2e-30 104.9 20.3 4.2 5 1 0 5 5 3 1 Htr2 transmembrane domain HAMP PF00672.25 gi|336253838|ref|YP_004596945.1| - 1.4e-12 47.8 14.1 6e-10 39.3 0.4 4.6 5 2 0 5 5 3 2 HAMP domain NPV_P10 PF05531.12 gi|336253838|ref|YP_004596945.1| - 0.00078 19.9 20.6 0.12 12.9 4.6 4.5 3 1 1 4 4 4 2 Nucleopolyhedrovirus P10 protein DUF1664 PF07889.12 gi|336253838|ref|YP_004596945.1| - 0.00098 19.2 31.7 0.014 15.4 2.4 5.3 3 2 2 5 5 5 2 Protein of unknown function (DUF1664) DUF948 PF06103.11 gi|336253838|ref|YP_004596945.1| - 0.0018 18.5 41.9 0.0091 16.2 3.6 6.8 4 2 4 8 8 7 2 Bacterial protein of unknown function (DUF948) Syntaxin-6_N PF09177.11 gi|336253838|ref|YP_004596945.1| - 0.012 16.1 4.8 0.012 16.1 4.8 4.6 3 2 1 4 4 4 0 Syntaxin 6, N-terminal Spc7 PF08317.11 gi|336253838|ref|YP_004596945.1| - 0.013 14.4 36.2 0.18 10.7 6.4 3.1 2 1 1 3 3 3 0 Spc7 kinetochore protein Laminin_II PF06009.12 gi|336253838|ref|YP_004596945.1| - 0.098 12.7 33.4 0.6 10.1 2.2 5.2 3 2 2 5 5 5 0 Laminin Domain II DUF489 PF04356.12 gi|336253838|ref|YP_004596945.1| - 0.12 12.3 9.2 1.1 9.2 0.6 3.8 2 2 3 5 5 5 0 Protein of unknown function (DUF489) Atg14 PF10186.9 gi|336253838|ref|YP_004596945.1| - 0.19 10.8 15.5 0.43 9.6 0.9 3.1 2 1 1 3 3 3 0 Vacuolar sorting 38 and autophagy-related subunit 14 Sec34 PF04136.15 gi|336253838|ref|YP_004596945.1| - 0.48 10.3 19.8 4.2 7.3 1.1 5.0 3 2 3 6 6 6 0 Sec34-like family ApoO PF09769.9 gi|336253838|ref|YP_004596945.1| - 0.52 10.3 7.0 1.8 8.5 0.1 3.6 3 2 1 4 4 4 0 Apolipoprotein O Fib_alpha PF08702.10 gi|336253838|ref|YP_004596945.1| - 0.65 10.2 18.8 3 8.0 2.6 4.1 3 2 1 4 4 4 0 Fibrinogen alpha/beta chain family Cytomega_UL84 PF06284.11 gi|336253838|ref|YP_004596945.1| - 1.1 7.6 7.7 2.2 6.6 7.7 1.4 1 0 0 1 1 1 0 Cytomegalovirus UL84 protein YabA PF06156.13 gi|336253838|ref|YP_004596945.1| - 1.4 9.6 20.6 0.37 11.5 2.6 4.9 2 1 1 3 3 3 0 Initiation control protein YabA DUF3584 PF12128.8 gi|336253838|ref|YP_004596945.1| - 1.9 5.9 43.6 0.081 10.4 23.4 2.2 1 1 0 2 2 2 0 Protein of unknown function (DUF3584) COG2 PF06148.11 gi|336253838|ref|YP_004596945.1| - 3.2 7.8 28.6 4 7.5 0.2 5.7 2 2 4 6 6 6 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF4201 PF13870.6 gi|336253838|ref|YP_004596945.1| - 3.2 7.4 10.4 11 5.7 4.4 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF4201) DUF4200 PF13863.6 gi|336253838|ref|YP_004596945.1| - 3.8 7.9 33.6 0.42 11.0 11.9 3.6 3 1 0 3 3 3 0 Domain of unknown function (DUF4200) LOH1CR12 PF10158.9 gi|336253838|ref|YP_004596945.1| - 4.1 7.4 9.9 2.6 8.1 0.5 3.1 2 2 0 2 2 2 0 Tumour suppressor protein Mod_r PF07200.13 gi|336253838|ref|YP_004596945.1| - 4.7 7.3 31.9 0.15 12.2 8.6 3.9 1 1 2 4 4 4 0 Modifier of rudimentary (Mod(r)) protein DUF5089 PF17002.5 gi|336253838|ref|YP_004596945.1| - 4.9 7.0 34.9 2.8 7.8 14.1 3.3 1 1 1 2 2 2 0 Domain of unknown function (DUF5089) DUF883 PF05957.13 gi|336253838|ref|YP_004596945.1| - 5.2 7.8 40.3 8.4 7.1 7.9 5.9 3 2 1 5 5 5 0 Bacterial protein of unknown function (DUF883) LXG PF04740.12 gi|336253838|ref|YP_004596945.1| - 5.4 6.7 29.2 0.99 9.1 7.0 3.5 2 2 1 3 3 3 0 LXG domain of WXG superfamily Seryl_tRNA_N PF02403.22 gi|336253838|ref|YP_004596945.1| - 5.8 7.2 35.2 4.7 7.5 1.4 5.1 3 2 3 6 6 6 0 Seryl-tRNA synthetase N-terminal domain RPW8 PF05659.11 gi|336253838|ref|YP_004596945.1| - 6.5 6.4 9.3 6.1 6.5 0.4 4.0 3 1 0 4 4 4 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 TMPIT PF07851.13 gi|336253838|ref|YP_004596945.1| - 7 5.8 21.6 3.9 6.6 2.4 3.7 2 1 2 4 4 4 0 TMPIT-like protein CPBP PF02517.16 gi|336253839|ref|YP_004596946.1| - 1.9e-10 41.0 8.0 1.9e-10 41.0 8.0 2.1 2 1 0 2 2 2 1 CPBP intramembrane metalloprotease Glycophorin_A PF01102.18 gi|336253839|ref|YP_004596946.1| - 0.072 13.3 0.6 0.38 11.0 0.1 2.2 3 0 0 3 3 3 0 Glycophorin A NDUF_B12 PF08122.12 gi|336253839|ref|YP_004596946.1| - 0.2 11.8 1.1 8.9 6.4 0.1 3.0 2 0 0 2 2 2 0 NADH-ubiquinone oxidoreductase B12 subunit family DEAD_assoc PF08494.11 gi|336253840|ref|YP_004596947.1| - 7.9e-51 172.6 0.6 1.6e-50 171.6 0.6 1.5 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.29 gi|336253840|ref|YP_004596947.1| - 1.4e-29 103.1 0.0 2e-28 99.3 0.0 2.2 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|336253840|ref|YP_004596947.1| - 2.9e-18 66.2 0.1 1.6e-16 60.6 0.0 2.4 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|336253840|ref|YP_004596947.1| - 7e-08 32.7 0.0 4.1e-07 30.2 0.0 2.0 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_22 PF13401.6 gi|336253840|ref|YP_004596947.1| - 0.00028 21.2 0.0 0.0029 17.9 0.0 2.6 1 1 0 1 1 1 1 AAA domain SNF2_N PF00176.23 gi|336253840|ref|YP_004596947.1| - 0.013 14.3 0.0 0.025 13.3 0.0 1.4 1 0 0 1 1 1 0 SNF2 family N-terminal domain AAA_19 PF13245.6 gi|336253840|ref|YP_004596947.1| - 0.019 15.3 0.0 0.11 12.8 0.0 2.2 2 0 0 2 2 2 0 AAA domain UvrD-helicase PF00580.21 gi|336253840|ref|YP_004596947.1| - 0.094 12.2 0.0 3.8 6.9 0.0 2.4 2 0 0 2 2 2 0 UvrD/REP helicase N-terminal domain YdjM PF04307.14 gi|336253841|ref|YP_004596948.1| - 0.02 14.2 2.3 0.044 13.1 2.3 1.6 1 1 0 1 1 1 0 LexA-binding, inner membrane-associated putative hydrolase AIRS_C PF02769.22 gi|336253842|ref|YP_004596949.1| - 1.8e-27 96.4 2.6 3.3e-27 95.5 2.6 1.4 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|336253842|ref|YP_004596949.1| - 3.8e-16 59.5 0.6 3.8e-16 59.5 0.6 2.0 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain PAP2 PF01569.21 gi|336253845|ref|YP_004596952.1| - 4e-19 68.7 1.2 4e-19 68.7 1.2 2.1 2 1 0 2 2 2 1 PAP2 superfamily PAP2_3 PF14378.6 gi|336253845|ref|YP_004596952.1| - 3.3e-07 30.2 16.5 1.3e-06 28.2 11.2 3.0 2 1 0 2 2 2 1 PAP2 superfamily CoA_transf_3 PF02515.17 gi|336253846|ref|YP_004596953.1| - 2.3e-124 415.3 0.0 2.7e-124 415.0 0.0 1.0 1 0 0 1 1 1 1 CoA-transferase family III Aldedh PF00171.22 gi|336253847|ref|YP_004596954.1| - 1.6e-19 69.8 0.2 1.1e-17 63.7 0.2 2.1 2 0 0 2 2 2 2 Aldehyde dehydrogenase family TctA PF01970.16 gi|336253848|ref|YP_004596955.1| - 1.1e-126 422.9 38.8 1.5e-126 422.5 38.8 1.1 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family TctB PF07331.11 gi|336253849|ref|YP_004596956.1| - 4.1e-15 56.2 4.4 7.1e-15 55.5 4.4 1.4 1 1 0 1 1 1 1 Tripartite tricarboxylate transporter TctB family TctC PF03401.14 gi|336253850|ref|YP_004596957.1| - 5.9e-16 58.3 0.0 8.2e-16 57.9 0.0 1.1 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter family receptor Phosphonate-bd PF12974.7 gi|336253850|ref|YP_004596957.1| - 0.0035 17.0 0.0 0.0071 16.0 0.0 1.5 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein UCR_Fe-S_N PF10399.9 gi|336253850|ref|YP_004596957.1| - 0.058 12.7 1.2 0.13 11.6 1.2 1.6 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Aldo_ket_red PF00248.21 gi|336253851|ref|YP_004596958.1| - 6.5e-68 229.1 0.0 7.3e-68 228.9 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family Trimer_CC PF08954.11 gi|336253851|ref|YP_004596958.1| - 0.15 11.6 1.0 10 5.8 0.1 2.6 2 0 0 2 2 2 0 Trimerisation motif AAA_11 PF13086.6 gi|336253852|ref|YP_004596959.1| - 4.8e-39 134.7 0.5 1.2e-18 67.8 0.4 2.6 1 1 1 2 2 2 2 AAA domain AAA_12 PF13087.6 gi|336253852|ref|YP_004596959.1| - 1.2e-38 132.7 0.0 1.9e-38 132.1 0.0 1.3 1 0 0 1 1 1 1 AAA domain Dna2 PF08696.11 gi|336253852|ref|YP_004596959.1| - 1.9e-19 70.3 0.0 6.6e-18 65.3 0.0 2.2 1 1 0 1 1 1 1 DNA replication factor Dna2 AAA_30 PF13604.6 gi|336253852|ref|YP_004596959.1| - 3.1e-17 62.9 0.8 9.6e-17 61.3 0.4 2.1 2 0 0 2 2 2 1 AAA domain PDDEXK_1 PF12705.7 gi|336253852|ref|YP_004596959.1| - 5.6e-14 52.7 0.1 3.7e-13 50.0 0.0 2.1 2 0 0 2 2 2 1 PD-(D/E)XK nuclease superfamily AAA_19 PF13245.6 gi|336253852|ref|YP_004596959.1| - 5.1e-13 49.6 0.1 2.5e-12 47.3 0.2 2.2 2 1 0 2 2 2 1 AAA domain Viral_helicase1 PF01443.18 gi|336253852|ref|YP_004596959.1| - 8.3e-07 29.0 0.0 0.0033 17.2 0.0 3.1 3 0 0 3 3 3 2 Viral (Superfamily 1) RNA helicase UvrD-helicase PF00580.21 gi|336253852|ref|YP_004596959.1| - 1.1e-05 25.2 0.0 1.8e-05 24.4 0.0 1.4 1 0 0 1 1 1 1 UvrD/REP helicase N-terminal domain Cas_Cas4 PF01930.17 gi|336253852|ref|YP_004596959.1| - 5.2e-05 23.4 0.0 0.00032 20.9 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function DUF83 Helicase_RecD PF05127.14 gi|336253852|ref|YP_004596959.1| - 7.2e-05 22.7 0.1 0.00027 20.8 0.0 2.0 2 0 0 2 2 2 1 Helicase AAA_22 PF13401.6 gi|336253852|ref|YP_004596959.1| - 0.00047 20.4 0.0 0.0017 18.6 0.0 2.0 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|336253852|ref|YP_004596959.1| - 0.00088 19.7 0.4 0.00088 19.7 0.4 2.6 2 1 0 2 2 2 1 AAA ATPase domain ResIII PF04851.15 gi|336253852|ref|YP_004596959.1| - 0.0015 18.6 0.0 0.0032 17.5 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DUF4350 PF14258.6 gi|336253852|ref|YP_004596959.1| - 0.0072 16.7 0.1 57 4.2 0.0 4.8 4 0 0 4 4 4 0 Domain of unknown function (DUF4350) PhoH PF02562.16 gi|336253852|ref|YP_004596959.1| - 0.0086 15.5 0.1 0.033 13.6 0.1 1.8 1 1 1 2 2 2 1 PhoH-like protein AAA PF00004.29 gi|336253852|ref|YP_004596959.1| - 0.011 16.2 0.1 0.037 14.5 0.1 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 gi|336253852|ref|YP_004596959.1| - 0.012 15.1 0.0 0.03 13.8 0.0 1.6 2 0 0 2 2 2 0 P-loop containing dynein motor region IstB_IS21 PF01695.17 gi|336253852|ref|YP_004596959.1| - 0.021 14.5 0.0 0.042 13.6 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein UvrD_C_2 PF13538.6 gi|336253852|ref|YP_004596959.1| - 0.029 14.2 0.0 0.058 13.2 0.0 1.5 1 0 0 1 1 1 0 UvrD-like helicase C-terminal domain T2SSE PF00437.20 gi|336253852|ref|YP_004596959.1| - 0.067 12.2 0.0 0.15 11.1 0.0 1.6 1 0 0 1 1 1 0 Type II/IV secretion system protein PDZ_6 PF17820.1 gi|336253852|ref|YP_004596959.1| - 0.069 13.0 0.0 0.2 11.5 0.0 1.8 1 0 0 1 1 1 0 PDZ domain AAA_24 PF13479.6 gi|336253852|ref|YP_004596959.1| - 0.081 12.6 0.0 0.42 10.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|336253852|ref|YP_004596959.1| - 0.085 13.4 0.1 4.8 7.7 0.0 3.0 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.22 gi|336253852|ref|YP_004596959.1| - 0.09 12.4 0.1 0.36 10.4 0.0 2.1 3 0 0 3 3 3 0 SRP54-type protein, GTPase domain AAA_25 PF13481.6 gi|336253852|ref|YP_004596959.1| - 0.099 12.2 0.8 0.23 11.0 0.0 2.1 2 0 0 2 2 1 0 AAA domain DUF2075 PF09848.9 gi|336253852|ref|YP_004596959.1| - 0.1 11.8 0.0 0.41 9.8 0.0 1.9 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_5 PF07728.14 gi|336253852|ref|YP_004596959.1| - 0.1 12.6 0.1 0.39 10.7 0.0 2.0 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) RuvB_N PF05496.12 gi|336253852|ref|YP_004596959.1| - 0.13 12.0 0.0 0.29 10.8 0.0 1.6 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain PIF1 PF05970.14 gi|336253852|ref|YP_004596959.1| - 0.21 10.7 0.0 4 6.5 0.0 2.1 2 0 0 2 2 2 0 PIF1-like helicase SPW PF03779.14 gi|336253853|ref|YP_004596960.1| - 2.8e-05 23.6 24.0 0.0003 20.3 6.5 2.5 2 1 0 2 2 2 2 SPW repeat NVEALA PF14055.6 gi|336253853|ref|YP_004596960.1| - 0.33 11.0 2.4 3.3 7.8 0.0 2.5 3 0 0 3 3 3 0 NVEALA protein Phage_holin_5_2 PF16079.5 gi|336253853|ref|YP_004596960.1| - 0.34 11.3 7.1 0.45 10.9 0.2 2.1 2 0 0 2 2 2 0 Phage holin family Hol44, in holin superfamily V FeoB_associated PF12669.7 gi|336253853|ref|YP_004596960.1| - 0.71 10.3 0.0 0.71 10.3 0.0 3.0 3 1 1 4 4 4 0 FeoB-associated Cys-rich membrane protein PGPGW PF09656.10 gi|336253854|ref|YP_004596961.1| - 0.0034 16.9 0.5 0.0056 16.2 0.0 1.6 2 0 0 2 2 2 1 Putative transmembrane protein (PGPGW) HHH_2 PF12826.7 gi|336253855|ref|YP_004596962.1| - 0.00027 21.0 1.0 0.025 14.6 0.7 2.4 2 0 0 2 2 2 2 Helix-hairpin-helix motif COG2 PF06148.11 gi|336253855|ref|YP_004596962.1| - 0.041 14.0 0.1 0.086 12.9 0.1 1.3 1 1 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF5595 PF18077.1 gi|336253855|ref|YP_004596962.1| - 0.35 11.0 3.6 0.21 11.7 1.2 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF5595) Peripla_BP_2 PF01497.18 gi|336253856|ref|YP_004596963.1| - 6.4e-16 58.6 0.0 9.3e-16 58.1 0.0 1.3 1 1 0 1 1 1 1 Periplasmic binding protein Clenterotox PF03505.14 gi|336253856|ref|YP_004596963.1| - 0.091 12.4 0.1 0.15 11.6 0.1 1.2 1 0 0 1 1 1 0 Clostridium enterotoxin B12-binding PF02310.19 gi|336253856|ref|YP_004596963.1| - 0.12 12.5 0.0 0.84 9.7 0.0 2.1 2 0 0 2 2 2 0 B12 binding domain DUF3225 PF11533.8 gi|336253857|ref|YP_004596964.1| - 6e-05 22.8 0.1 9.6e-05 22.1 0.1 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF3225) SnoaL_3 PF13474.6 gi|336253857|ref|YP_004596964.1| - 0.016 15.4 2.1 0.028 14.7 0.7 2.0 2 1 0 2 2 2 0 SnoaL-like domain Zincin_2 PF10103.9 gi|336253859|ref|YP_004596966.1| - 9.4e-64 215.8 2.9 1.5e-33 116.5 0.7 2.0 1 1 1 2 2 2 2 Zincin-like metallopeptidase BLOC1S3 PF15753.5 gi|336253860|ref|YP_004596967.1| - 0.12 12.5 1.8 0.15 12.2 1.8 1.1 1 0 0 1 1 1 0 Biogenesis of lysosome-related organelles complex 1 subunit 3 LSM PF01423.22 gi|336253861|ref|YP_004596968.1| - 4e-19 68.1 0.0 4.6e-19 67.9 0.0 1.1 1 0 0 1 1 1 1 LSM domain SM-ATX PF14438.6 gi|336253861|ref|YP_004596968.1| - 1.5e-07 31.4 0.0 1.9e-07 31.1 0.0 1.1 1 0 0 1 1 1 1 Ataxin 2 SM domain Ribosomal_L37e PF01907.19 gi|336253862|ref|YP_004596969.1| - 5e-23 81.0 12.1 5.5e-23 80.9 12.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e zinc_ribbon_6 PF14599.6 gi|336253862|ref|YP_004596969.1| - 0.061 13.3 2.1 0.086 12.9 2.1 1.2 1 0 0 1 1 1 0 Zinc-ribbon HypA PF01155.19 gi|336253862|ref|YP_004596969.1| - 0.064 13.3 2.3 0.07 13.1 2.3 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ribbon_3 PF13248.6 gi|336253862|ref|YP_004596969.1| - 0.068 12.6 2.5 3 7.4 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|336253862|ref|YP_004596969.1| - 0.099 12.4 5.5 0.58 9.9 0.6 2.2 2 0 0 2 2 2 0 zinc-ribbon domain RNA_POL_M_15KD PF02150.16 gi|336253862|ref|YP_004596969.1| - 0.49 10.3 5.9 1.2 9.0 0.5 2.2 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit OrfB_Zn_ribbon PF07282.11 gi|336253862|ref|YP_004596969.1| - 0.72 9.8 7.1 1.3 9.0 7.0 1.5 1 1 1 2 2 2 0 Putative transposase DNA-binding domain DUF4013 PF13197.6 gi|336253863|ref|YP_004596970.1| - 1.5e-33 116.0 15.5 1.5e-33 116.0 15.5 1.8 1 1 1 2 2 2 1 Protein of unknown function (DUF4013) DUF2189 PF09955.9 gi|336253863|ref|YP_004596970.1| - 0.0042 17.3 11.9 0.0084 16.4 0.3 3.0 2 1 1 3 3 3 2 Predicted integral membrane protein (DUF2189) PALP PF00291.25 gi|336253864|ref|YP_004596971.1| - 6.4e-64 216.2 1.9 7.5e-64 216.0 1.9 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme TF_Zn_Ribbon PF08271.12 gi|336253864|ref|YP_004596971.1| - 0.023 14.2 2.5 0.064 12.8 2.5 1.8 1 0 0 1 1 1 0 TFIIB zinc-binding DZR PF12773.7 gi|336253864|ref|YP_004596971.1| - 0.028 14.4 0.3 0.051 13.6 0.3 1.4 1 0 0 1 1 1 0 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|336253864|ref|YP_004596971.1| - 0.032 14.3 1.7 0.032 14.3 1.7 2.2 2 0 0 2 2 2 0 Zinc ribbon domain HypA PF01155.19 gi|336253864|ref|YP_004596971.1| - 0.095 12.7 0.2 0.18 11.8 0.2 1.4 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-LYAR PF08790.11 gi|336253864|ref|YP_004596971.1| - 0.19 11.7 0.8 0.4 10.6 0.1 2.0 2 0 0 2 2 2 0 LYAR-type C2HC zinc finger PcrB PF01884.17 gi|336253865|ref|YP_004596972.1| - 1.2e-53 181.9 0.4 1.4e-53 181.7 0.4 1.0 1 0 0 1 1 1 1 PcrB family HTH_10 PF04967.12 gi|336253866|ref|YP_004596973.1| - 1.6e-15 56.6 0.0 2.6e-15 56.0 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|336253866|ref|YP_004596973.1| - 0.0021 17.9 4.8 0.0026 17.6 0.9 2.6 2 1 0 2 2 2 1 GAF and HTH_10 associated domain Sigma70_r4 PF04545.16 gi|336253866|ref|YP_004596973.1| - 0.029 13.9 0.4 0.066 12.7 0.4 1.7 1 1 0 1 1 1 0 Sigma-70, region 4 HTH_AsnC-type PF13404.6 gi|336253866|ref|YP_004596973.1| - 0.034 14.0 0.2 0.079 12.8 0.2 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain UPF0122 PF04297.14 gi|336253866|ref|YP_004596973.1| - 0.22 11.8 0.0 0.34 11.2 0.0 1.3 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like HalOD1 PF18545.1 gi|336253867|ref|YP_004596974.1| - 5.9e-24 84.1 0.0 7.1e-24 83.9 0.0 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 DUF1499 PF07386.11 gi|336253867|ref|YP_004596974.1| - 0.085 13.4 0.0 0.1 13.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1499) HTH_10 PF04967.12 gi|336253869|ref|YP_004596976.1| - 1.8e-15 56.5 0.3 2.9e-15 55.8 0.3 1.4 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4_2 PF08281.12 gi|336253869|ref|YP_004596976.1| - 0.00059 19.4 1.5 0.0095 15.6 0.6 2.8 2 1 0 2 2 2 1 Sigma-70, region 4 LexA_DNA_bind PF01726.16 gi|336253869|ref|YP_004596976.1| - 0.011 15.5 0.1 0.032 14.0 0.1 1.8 1 1 0 1 1 1 0 LexA DNA binding domain Sigma70_r4 PF04545.16 gi|336253869|ref|YP_004596976.1| - 0.011 15.3 0.1 0.028 13.9 0.1 1.8 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_24 PF13412.6 gi|336253869|ref|YP_004596976.1| - 0.016 14.8 0.0 0.03 13.9 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding GerE PF00196.19 gi|336253869|ref|YP_004596976.1| - 0.033 13.7 0.0 0.17 11.5 0.0 2.0 1 1 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_5 PF01022.20 gi|336253869|ref|YP_004596976.1| - 0.051 13.5 0.0 0.11 12.4 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family p450 PF00067.22 gi|336253870|ref|YP_004596977.1| - 1.9e-95 320.3 0.0 2.3e-95 320.1 0.0 1.0 1 0 0 1 1 1 1 Cytochrome P450 PIN PF01850.21 gi|336253872|ref|YP_004596979.1| - 6.4e-05 23.5 0.2 0.0001 22.8 0.2 1.3 1 0 0 1 1 1 1 PIN domain tRNA-synt_2 PF00152.20 gi|336253873|ref|YP_004596980.1| - 4.8e-85 285.4 0.0 5.7e-85 285.1 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|336253873|ref|YP_004596980.1| - 5.4e-15 55.1 0.3 1e-14 54.3 0.3 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 gi|336253873|ref|YP_004596980.1| - 0.0011 18.6 0.1 0.2 11.1 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class II core domain (F) BOF PF04076.13 gi|336253873|ref|YP_004596980.1| - 0.15 12.2 0.4 0.73 9.9 0.1 2.3 3 0 0 3 3 3 0 Bacterial OB fold (BOF) protein Na_H_Exchanger PF00999.21 gi|336253874|ref|YP_004596981.1| - 2.6e-38 131.8 26.5 3.3e-38 131.5 26.5 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Acatn PF13000.7 gi|336253874|ref|YP_004596981.1| - 0.048 12.2 0.1 0.064 11.7 0.1 1.1 1 0 0 1 1 1 0 Acetyl-coenzyme A transporter 1 Usp PF00582.26 gi|336253875|ref|YP_004596982.1| - 2e-38 132.1 0.2 2.3e-38 131.9 0.2 1.0 1 0 0 1 1 1 1 Universal stress protein family DNA_photolyase PF00875.18 gi|336253875|ref|YP_004596982.1| - 0.0045 17.0 0.0 0.007 16.4 0.0 1.2 1 0 0 1 1 1 1 DNA photolyase GHMP_kinases_N PF00288.26 gi|336253877|ref|YP_004596984.1| - 1.9e-11 44.0 2.3 1.1e-10 41.5 1.6 2.2 2 0 0 2 2 2 1 GHMP kinases N terminal domain DUF1508 PF07411.12 gi|336253878|ref|YP_004596985.1| - 7.9e-71 233.7 7.2 2e-10 40.4 0.0 13.4 13 0 0 13 13 13 12 Domain of unknown function (DUF1508) FtsQ PF03799.15 gi|336253878|ref|YP_004596985.1| - 0.00081 20.2 4.8 3.6 8.4 0.1 5.3 3 2 1 4 4 4 1 Cell division protein FtsQ Nucleoporin2 PF04096.14 gi|336253878|ref|YP_004596985.1| - 0.0012 19.0 0.2 13 5.9 0.0 4.2 5 0 0 5 5 4 1 Nucleoporin autopeptidase DDE_Tnp_IS240 PF13610.6 gi|336253878|ref|YP_004596985.1| - 0.0017 18.6 6.6 38 4.5 0.0 6.9 6 1 2 8 8 8 0 DDE domain PPC PF04151.15 gi|336253878|ref|YP_004596985.1| - 0.048 14.8 0.1 0.33 12.1 0.0 2.5 2 0 0 2 2 1 0 Bacterial pre-peptidase C-terminal domain LtrA PF06772.11 gi|336253878|ref|YP_004596985.1| - 0.087 12.0 2.1 0.13 11.4 2.1 1.2 1 0 0 1 1 1 0 Bacterial low temperature requirement A protein (LtrA) TolB_like PF15869.5 gi|336253878|ref|YP_004596985.1| - 0.25 10.5 0.0 0.46 9.7 0.0 1.3 1 0 0 1 1 1 0 TolB-like 6-blade propeller-like DUF2914 PF11141.8 gi|336253878|ref|YP_004596985.1| - 0.34 10.7 0.0 0.34 10.7 0.0 4.2 5 0 0 5 5 5 0 Protein of unknown function (DUF2914) DUF2188 PF09954.9 gi|336253878|ref|YP_004596985.1| - 0.45 10.7 0.0 0.45 10.7 0.0 6.9 6 1 1 7 7 7 0 Uncharacterized protein conserved in bacteria (DUF2188) DMRT-like PF15791.5 gi|336253878|ref|YP_004596985.1| - 0.55 10.7 2.5 1.9 9.0 0.3 2.3 2 0 0 2 2 2 0 Doublesex-and mab-3-related transcription factor C1 and C2 SPOR PF05036.13 gi|336253878|ref|YP_004596985.1| - 1.4 9.3 10.2 38 4.7 0.0 5.7 7 0 0 7 7 6 0 Sporulation related domain DUF615 PF04751.14 gi|336253878|ref|YP_004596985.1| - 6.6 6.7 6.8 11 6.0 0.1 3.8 3 1 1 4 4 4 0 Protein of unknown function (DUF615) PPS_PS PF02006.16 gi|336253879|ref|YP_004596986.1| - 6.4e-77 257.1 2.5 8.1e-77 256.7 2.5 1.1 1 0 0 1 1 1 1 Phosphopantothenate/pantothenate synthetase RTT107_BRCT_6 PF16771.5 gi|336253879|ref|YP_004596986.1| - 0.077 13.2 0.0 0.13 12.4 0.0 1.4 1 0 0 1 1 1 0 Regulator of Ty1 transposition protein 107 BRCT domain SBF PF01758.16 gi|336253880|ref|YP_004596987.1| - 1.2e-34 119.7 6.5 2.3e-34 118.8 6.5 1.4 1 0 0 1 1 1 1 Sodium Bile acid symporter family Gly-zipper_YMGG PF13441.6 gi|336253882|ref|YP_004596989.1| - 4.8e-05 23.0 21.2 5.7e-05 22.8 21.2 1.1 1 0 0 1 1 1 1 YMGG-like Gly-zipper Gly-zipper_Omp PF13488.6 gi|336253882|ref|YP_004596989.1| - 0.00031 20.7 18.8 0.00039 20.4 18.8 1.2 1 0 0 1 1 1 1 Glycine zipper DUF1269 PF06897.12 gi|336253882|ref|YP_004596989.1| - 0.048 13.9 8.2 0.055 13.8 8.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1269) Gly-zipper_OmpA PF13436.6 gi|336253882|ref|YP_004596989.1| - 0.093 12.5 27.9 0.45 10.3 27.9 1.8 1 1 0 1 1 1 0 Glycine-zipper domain TraT PF05818.12 gi|336253882|ref|YP_004596989.1| - 3.7 7.2 7.2 4.3 7.0 7.2 1.0 1 0 0 1 1 1 0 Enterobacterial TraT complement resistance protein Romo1 PF10247.9 gi|336253882|ref|YP_004596989.1| - 8.2 6.9 14.9 3.4 8.1 5.0 2.1 1 1 1 2 2 2 0 Reactive mitochondrial oxygen species modulator 1 tRNA-synt_1b PF00579.25 gi|336253883|ref|YP_004596990.1| - 4.4e-47 160.8 0.0 5.6e-47 160.5 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) DUF2156 PF09924.9 gi|336253883|ref|YP_004596990.1| - 0.077 12.0 0.3 0.15 11.1 0.2 1.5 1 1 0 1 1 1 0 Uncharacterised conserved protein (DUF2156) tRNA-synt_1f PF01921.18 gi|336253883|ref|YP_004596990.1| - 0.12 11.3 0.0 13 4.6 0.0 2.2 2 0 0 2 2 2 0 tRNA synthetases class I (K) PHD PF00628.29 gi|336253884|ref|YP_004596991.1| - 0.00017 21.4 8.3 0.0014 18.5 8.3 1.9 1 1 0 1 1 1 1 PHD-finger C1_1 PF00130.22 gi|336253884|ref|YP_004596991.1| - 0.00087 19.1 6.5 0.0011 18.9 3.9 1.9 1 1 1 2 2 2 1 Phorbol esters/diacylglycerol binding domain (C1 domain) DZR PF12773.7 gi|336253884|ref|YP_004596991.1| - 0.0041 17.1 8.1 0.0083 16.1 8.1 1.5 1 1 0 1 1 1 1 Double zinc ribbon DUF35_N PF12172.8 gi|336253884|ref|YP_004596991.1| - 0.007 16.2 4.3 1.1 9.2 0.1 3.1 3 0 0 3 3 3 1 Rubredoxin-like zinc ribbon domain (DUF35_N) Prok-RING_1 PF14446.6 gi|336253884|ref|YP_004596991.1| - 0.0076 16.2 8.3 0.023 14.6 8.3 1.7 1 1 0 1 1 1 1 Prokaryotic RING finger family 1 zinc_ribbon_2 PF13240.6 gi|336253884|ref|YP_004596991.1| - 0.013 15.1 2.8 0.013 15.1 2.8 2.5 2 1 0 2 2 2 0 zinc-ribbon domain NOB1_Zn_bind PF08772.11 gi|336253884|ref|YP_004596991.1| - 0.017 15.2 1.4 0.017 15.2 1.4 1.9 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-RING_9 PF13901.6 gi|336253884|ref|YP_004596991.1| - 0.018 15.0 6.3 0.021 14.8 6.3 1.1 1 0 0 1 1 1 0 Putative zinc-RING and/or ribbon YhfH PF14149.6 gi|336253884|ref|YP_004596991.1| - 0.028 14.4 14.8 0.26 11.3 6.1 2.8 1 1 2 3 3 3 0 YhfH-like protein zinc_ribbon_15 PF17032.5 gi|336253884|ref|YP_004596991.1| - 0.029 15.1 6.5 0.039 14.7 1.8 2.0 2 0 0 2 2 2 0 zinc-ribbon family zf_UBZ PF18439.1 gi|336253884|ref|YP_004596991.1| - 0.043 13.4 9.1 0.21 11.2 0.2 3.1 2 1 1 3 3 3 0 Ubiquitin-Binding Zinc Finger C1_2 PF03107.16 gi|336253884|ref|YP_004596991.1| - 0.062 13.6 2.2 0.062 13.6 2.2 2.0 1 1 1 2 2 2 0 C1 domain Ribosomal_L37e PF01907.19 gi|336253884|ref|YP_004596991.1| - 0.07 13.3 7.8 1.9 8.7 0.9 2.2 1 1 1 2 2 2 0 Ribosomal protein L37e RNA_POL_M_15KD PF02150.16 gi|336253884|ref|YP_004596991.1| - 0.19 11.6 8.0 0.64 10.0 4.3 2.5 2 1 0 2 2 2 0 RNA polymerases M/15 Kd subunit OrfB_Zn_ribbon PF07282.11 gi|336253884|ref|YP_004596991.1| - 0.29 11.1 9.5 0.99 9.4 2.6 2.1 1 1 1 2 2 2 0 Putative transposase DNA-binding domain HypA PF01155.19 gi|336253884|ref|YP_004596991.1| - 0.31 11.1 10.1 9.9 6.2 10.1 2.0 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA NinF PF05810.12 gi|336253884|ref|YP_004596991.1| - 0.47 10.4 5.9 0.099 12.5 2.8 1.5 1 1 0 1 1 1 0 NinF protein Cript PF10235.9 gi|336253884|ref|YP_004596991.1| - 0.55 10.8 6.5 2.1 9.0 6.5 1.9 1 1 0 1 1 1 0 Microtubule-associated protein CRIPT zf-dskA_traR PF01258.17 gi|336253884|ref|YP_004596991.1| - 1.4 8.9 18.3 0.51 10.3 1.2 3.1 2 1 1 3 3 3 0 Prokaryotic dksA/traR C4-type zinc finger Ribosomal_S27e PF01667.17 gi|336253884|ref|YP_004596991.1| - 1.8 8.4 8.5 19 5.1 0.2 2.9 1 1 1 2 2 2 0 Ribosomal protein S27 Chordopox_RPO7 PF05864.12 gi|336253884|ref|YP_004596991.1| - 2 8.7 5.2 9.8 6.5 0.1 2.4 1 1 1 2 2 2 0 Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7) ADD_ATRX PF17981.1 gi|336253884|ref|YP_004596991.1| - 2.7 7.9 8.2 3.7 7.5 0.1 2.9 1 1 2 3 3 3 0 Cysteine Rich ADD domain DUF2688 PF10892.8 gi|336253884|ref|YP_004596991.1| - 5.4 6.6 15.4 3.2 7.3 1.5 2.9 1 1 2 3 3 3 0 Protein of unknown function (DUF2688) zf-CCHC PF00098.23 gi|336253884|ref|YP_004596991.1| - 5.5 7.2 11.2 13 6.1 0.2 3.3 3 0 0 3 3 3 0 Zinc knuckle Zn-ribbon_8 PF09723.10 gi|336253884|ref|YP_004596991.1| - 5.8 7.1 13.1 1.7 8.9 3.7 2.4 1 1 1 2 2 2 0 Zinc ribbon domain DUF305 PF03713.13 gi|336253885|ref|YP_004596992.1| - 1.7e-30 106.1 0.0 2.4e-30 105.7 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF305) DUF4142 PF13628.6 gi|336253885|ref|YP_004596992.1| - 1.8e-10 41.2 0.0 5.3e-10 39.7 0.0 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF4142) BPL_LplA_LipB PF03099.19 gi|336253886|ref|YP_004596993.1| - 2.1e-15 56.8 0.0 3.1e-15 56.2 0.0 1.2 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family HTH_11 PF08279.12 gi|336253886|ref|YP_004596993.1| - 8.7e-13 48.0 0.0 1.6e-12 47.2 0.0 1.4 1 0 0 1 1 1 1 HTH domain BPL_C PF02237.17 gi|336253886|ref|YP_004596993.1| - 1.4e-12 47.3 0.3 2.5e-12 46.5 0.3 1.5 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain HTH_20 PF12840.7 gi|336253886|ref|YP_004596993.1| - 1.8e-07 31.1 0.1 3.4e-06 27.0 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|336253886|ref|YP_004596993.1| - 1.7e-06 27.4 0.0 3.4e-06 26.5 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|336253886|ref|YP_004596993.1| - 1.3e-05 24.9 0.0 2.2e-05 24.2 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|336253886|ref|YP_004596993.1| - 0.00037 20.3 0.1 0.0013 18.6 0.0 2.0 2 0 0 2 2 2 1 MarR family Rrf2 PF02082.20 gi|336253886|ref|YP_004596993.1| - 0.007 16.7 0.0 0.012 15.9 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator HTH_AsnC-type PF13404.6 gi|336253886|ref|YP_004596993.1| - 0.014 15.2 0.1 0.06 13.2 0.1 2.2 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Fe_dep_repress PF01325.19 gi|336253886|ref|YP_004596993.1| - 0.079 13.2 0.0 0.36 11.0 0.0 2.0 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain NYN PF01936.18 gi|336253887|ref|YP_004596994.1| - 0.013 16.0 0.2 0.23 11.9 0.1 2.0 1 1 1 2 2 2 0 NYN domain HTH_20 PF12840.7 gi|336253887|ref|YP_004596994.1| - 0.075 13.1 0.1 1.2 9.3 0.1 2.2 1 1 0 1 1 1 0 Helix-turn-helix domain DUF2587 PF10759.9 gi|336253887|ref|YP_004596994.1| - 0.1 12.1 0.1 0.15 11.6 0.1 1.2 1 1 0 1 1 1 0 Protein of unknown function (DUF2587) DUF2551 PF10826.8 gi|336253887|ref|YP_004596994.1| - 0.13 12.5 0.8 0.21 11.9 0.8 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2551) HTH_10 PF04967.12 gi|336253888|ref|YP_004596995.1| - 2.4e-15 56.1 0.0 5e-15 55.0 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|336253888|ref|YP_004596995.1| - 4.1e-13 49.5 1.9 6e-13 48.9 1.9 1.2 1 0 0 1 1 1 1 GAF and HTH_10 associated domain Sigma70_r4 PF04545.16 gi|336253888|ref|YP_004596995.1| - 0.00016 21.1 0.1 0.00068 19.1 0.0 2.0 2 0 0 2 2 2 1 Sigma-70, region 4 MarR_2 PF12802.7 gi|336253888|ref|YP_004596995.1| - 0.017 15.0 0.2 0.045 13.6 0.1 1.8 2 0 0 2 2 2 0 MarR family HTH_AsnC-type PF13404.6 gi|336253888|ref|YP_004596995.1| - 0.02 14.7 0.1 0.042 13.7 0.1 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|336253888|ref|YP_004596995.1| - 0.026 14.2 0.0 0.4 10.4 0.0 2.3 2 0 0 2 2 2 0 Sigma-70, region 4 SnoaL_2 PF12680.7 gi|336253888|ref|YP_004596995.1| - 0.068 13.8 2.4 2.1 9.0 1.1 2.3 1 1 1 2 2 2 0 SnoaL-like domain HTH_24 PF13412.6 gi|336253888|ref|YP_004596995.1| - 0.085 12.4 0.0 0.17 11.5 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Usp PF00582.26 gi|336253889|ref|YP_004596996.1| - 5.8e-38 130.6 0.3 6.8e-38 130.3 0.3 1.1 1 0 0 1 1 1 1 Universal stress protein family Nuc_deoxyrib_tr PF05014.15 gi|336253890|ref|YP_004596997.1| - 5.6e-15 55.5 0.0 6.1e-15 55.4 0.0 1.1 1 0 0 1 1 1 1 Nucleoside 2-deoxyribosyltransferase Glyco_trans_1_4 PF13692.6 gi|336253890|ref|YP_004596997.1| - 0.0037 17.7 0.0 0.0046 17.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 HD PF01966.22 gi|336253891|ref|YP_004596998.1| - 5.2e-11 42.8 2.8 9.9e-11 41.9 2.8 1.4 1 0 0 1 1 1 1 HD domain Amidohydro_1 PF01979.20 gi|336253892|ref|YP_004596999.1| - 6.5e-27 94.7 0.0 1.8e-24 86.8 0.0 2.2 1 1 0 1 1 1 1 Amidohydrolase family A_deaminase PF00962.22 gi|336253892|ref|YP_004596999.1| - 7.8e-06 25.4 0.0 1.1e-05 24.9 0.0 1.1 1 0 0 1 1 1 1 Adenosine/AMP deaminase Amidohydro_3 PF07969.11 gi|336253892|ref|YP_004596999.1| - 1.9e-05 24.3 2.9 0.00069 19.2 0.5 2.6 1 1 2 3 3 3 2 Amidohydrolase family MFS_1 PF07690.16 gi|336253893|ref|YP_004597000.1| - 1.3e-26 93.3 40.8 1.3e-26 93.3 40.8 1.6 1 1 0 2 2 2 1 Major Facilitator Superfamily MFS_2 PF13347.6 gi|336253893|ref|YP_004597000.1| - 4.1e-05 22.3 16.2 0.00014 20.5 2.7 2.2 1 1 1 2 2 2 2 MFS/sugar transport protein OATP PF03137.20 gi|336253893|ref|YP_004597000.1| - 0.032 12.5 1.5 1.8 6.7 0.5 2.4 2 0 0 2 2 2 0 Organic Anion Transporter Polypeptide (OATP) family COX1 PF00115.20 gi|336253894|ref|YP_004597001.1| - 3.6e-124 414.9 70.9 3.6e-124 414.9 70.9 2.9 2 1 1 3 3 3 1 Cytochrome C and Quinol oxidase polypeptide I COX3 PF00510.18 gi|336253894|ref|YP_004597001.1| - 6.3e-18 65.5 18.2 6.3e-18 65.5 18.2 2.9 3 0 0 3 3 3 1 Cytochrome c oxidase subunit III Aminotran_1_2 PF00155.21 gi|336253895|ref|YP_004597002.1| - 7.6e-66 222.7 0.0 9.4e-66 222.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II FTR PF01913.18 gi|336253895|ref|YP_004597002.1| - 0.0016 18.4 0.1 0.004 17.1 0.1 1.7 1 0 0 1 1 1 1 Formylmethanofuran-tetrahydromethanopterin formyltransferase Alliinase_C PF04864.13 gi|336253895|ref|YP_004597002.1| - 0.0092 14.9 0.0 0.031 13.2 0.0 1.7 1 1 0 1 1 1 1 Allinase Cys_Met_Meta_PP PF01053.20 gi|336253895|ref|YP_004597002.1| - 0.017 13.7 0.0 0.03 12.8 0.0 1.3 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme HTH_38 PF13936.6 gi|336253895|ref|YP_004597002.1| - 0.18 11.6 0.0 0.37 10.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain AAA_18 PF13238.6 gi|336253896|ref|YP_004597003.1| - 9.8e-25 87.6 0.3 1.4e-24 87.1 0.3 1.2 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|336253896|ref|YP_004597003.1| - 0.00022 21.5 5.3 0.0016 18.7 5.3 2.2 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|336253896|ref|YP_004597003.1| - 0.00039 20.6 1.2 0.33 11.1 0.0 2.3 1 1 1 2 2 2 2 AAA domain AAA_22 PF13401.6 gi|336253896|ref|YP_004597003.1| - 0.00097 19.4 0.0 0.0025 18.1 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.6 gi|336253896|ref|YP_004597003.1| - 0.0011 19.4 2.1 1.5 9.2 0.4 2.6 1 1 2 3 3 3 2 AAA domain NTPase_1 PF03266.15 gi|336253896|ref|YP_004597003.1| - 0.0071 16.3 0.0 0.016 15.1 0.0 1.6 1 0 0 1 1 1 1 NTPase AAA_16 PF13191.6 gi|336253896|ref|YP_004597003.1| - 0.014 15.8 4.9 0.039 14.3 4.9 1.7 1 1 0 1 1 1 0 AAA ATPase domain MeaB PF03308.16 gi|336253896|ref|YP_004597003.1| - 0.015 14.3 0.0 0.034 13.1 0.0 1.6 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB KTI12 PF08433.10 gi|336253896|ref|YP_004597003.1| - 0.018 14.5 0.0 0.023 14.1 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_5 PF07728.14 gi|336253896|ref|YP_004597003.1| - 0.022 14.7 0.0 0.069 13.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_30 PF13604.6 gi|336253896|ref|YP_004597003.1| - 0.024 14.4 0.0 0.054 13.2 0.0 1.6 2 0 0 2 2 2 0 AAA domain Thymidylate_kin PF02223.17 gi|336253896|ref|YP_004597003.1| - 0.047 13.4 0.7 0.41 10.3 0.1 2.1 2 0 0 2 2 2 0 Thymidylate kinase APS_kinase PF01583.20 gi|336253896|ref|YP_004597003.1| - 0.061 13.2 0.0 0.095 12.6 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_24 PF13479.6 gi|336253896|ref|YP_004597003.1| - 0.065 13.0 0.1 0.12 12.1 0.1 1.5 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|336253896|ref|YP_004597003.1| - 0.065 13.6 0.0 0.14 12.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain dNK PF01712.19 gi|336253896|ref|YP_004597003.1| - 0.071 12.9 0.1 4.8 7.0 0.1 2.1 1 1 1 2 2 2 0 Deoxynucleoside kinase DUF87 PF01935.17 gi|336253896|ref|YP_004597003.1| - 0.084 13.0 0.0 0.31 11.1 0.0 1.8 2 0 0 2 2 2 0 Helicase HerA, central domain Zeta_toxin PF06414.12 gi|336253896|ref|YP_004597003.1| - 0.11 11.8 0.1 0.58 9.4 0.0 2.0 2 1 0 2 2 2 0 Zeta toxin CoaE PF01121.20 gi|336253896|ref|YP_004597003.1| - 0.16 11.7 1.4 3.2 7.4 0.1 2.4 1 1 1 3 3 3 0 Dephospho-CoA kinase ABC_tran PF00005.27 gi|336253896|ref|YP_004597003.1| - 0.16 12.5 0.1 0.4 11.2 0.1 2.0 1 1 0 1 1 1 0 ABC transporter AAA PF00004.29 gi|336253896|ref|YP_004597003.1| - 0.2 12.1 0.9 0.28 11.6 0.2 1.8 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) CDP-OH_P_transf PF01066.21 gi|336253897|ref|YP_004597004.1| - 3.4e-10 40.5 7.5 5.8e-10 39.8 0.7 2.8 3 0 0 3 3 3 2 CDP-alcohol phosphatidyltransferase QCR10 PF09796.9 gi|336253897|ref|YP_004597004.1| - 1.3 9.1 4.6 0.81 9.8 0.8 2.5 2 0 0 2 2 2 0 Ubiquinol-cytochrome-c reductase complex subunit (QCR10) HTH_3 PF01381.22 gi|336253898|ref|YP_004597005.1| - 2.1e-10 40.5 0.3 2.9e-10 40.1 0.3 1.2 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|336253898|ref|YP_004597005.1| - 7.9e-09 35.4 0.5 1.3e-08 34.8 0.5 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|336253898|ref|YP_004597005.1| - 6.2e-08 32.9 0.3 1e-07 32.2 0.3 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|336253898|ref|YP_004597005.1| - 3.5e-05 23.6 0.4 5.6e-05 22.9 0.4 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain PI3K_1B_p101 PF10486.9 gi|336253898|ref|YP_004597005.1| - 0.0026 15.6 11.2 0.89 7.2 11.5 2.0 2 0 0 2 2 2 2 Phosphoinositide 3-kinase gamma adapter protein p101 subunit HTH_37 PF13744.6 gi|336253898|ref|YP_004597005.1| - 0.055 13.4 0.0 0.085 12.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain NOA36 PF06524.12 gi|336253898|ref|YP_004597005.1| - 0.2 11.0 4.8 0.23 10.7 4.8 1.1 1 0 0 1 1 1 0 NOA36 protein Macoilin PF09726.9 gi|336253898|ref|YP_004597005.1| - 0.92 8.0 8.7 0.97 7.9 8.7 1.1 1 0 0 1 1 1 0 Macoilin family Period_C PF12114.8 gi|336253898|ref|YP_004597005.1| - 5 6.7 28.4 1.6 8.3 20.5 2.1 2 0 0 2 2 2 0 Period protein 2/3C-terminal region Apt1 PF10351.9 gi|336253898|ref|YP_004597005.1| - 6.1 5.6 12.3 7.1 5.4 12.3 1.1 1 0 0 1 1 1 0 Golgi-body localisation protein domain TIM PF00121.18 gi|336253899|ref|YP_004597006.1| - 1.1e-08 34.8 0.0 2.6e-08 33.6 0.0 1.6 1 1 1 2 2 2 1 Triosephosphate isomerase ThiG PF05690.14 gi|336253899|ref|YP_004597006.1| - 5.1e-05 22.7 1.9 5.1e-05 22.7 1.9 1.7 1 1 0 2 2 2 1 Thiazole biosynthesis protein ThiG FMN_dh PF01070.18 gi|336253899|ref|YP_004597006.1| - 0.0016 17.6 3.7 0.0016 17.6 3.7 1.8 2 1 0 2 2 2 1 FMN-dependent dehydrogenase IGPS PF00218.21 gi|336253899|ref|YP_004597006.1| - 0.0034 16.6 0.0 0.0089 15.2 0.0 1.7 1 1 0 1 1 1 1 Indole-3-glycerol phosphate synthase Hydrolase_like PF13242.6 gi|336253899|ref|YP_004597006.1| - 0.063 13.4 2.8 0.11 12.6 0.4 2.4 2 0 0 2 2 2 0 HAD-hyrolase-like Glu_synthase PF01645.17 gi|336253899|ref|YP_004597006.1| - 0.078 12.1 2.2 0.12 11.5 0.5 1.8 1 1 1 2 2 2 0 Conserved region in glutamate synthase NMO PF03060.15 gi|336253899|ref|YP_004597006.1| - 0.15 11.4 10.2 0.066 12.6 7.3 1.6 1 1 1 2 2 2 0 Nitronate monooxygenase Repressor_Mnt PF11423.8 gi|336253900|ref|YP_004597007.1| - 0.073 12.9 1.3 0.28 11.0 0.3 2.2 2 0 0 2 2 2 0 Regulatory protein Mnt TIR_2 PF13676.6 gi|336253901|ref|YP_004597008.1| - 5.2e-08 33.5 0.0 7.4e-08 33.0 0.0 1.2 1 0 0 1 1 1 1 TIR domain Nuc_deoxyrib_tr PF05014.15 gi|336253901|ref|YP_004597008.1| - 2.1e-05 24.5 0.0 3e-05 24.0 0.0 1.3 1 0 0 1 1 1 1 Nucleoside 2-deoxyribosyltransferase DUF1863 PF08937.11 gi|336253901|ref|YP_004597008.1| - 0.0013 19.1 0.0 0.0019 18.5 0.0 1.2 1 0 0 1 1 1 1 MTH538 TIR-like domain (DUF1863) TIR PF01582.20 gi|336253901|ref|YP_004597008.1| - 0.11 12.3 0.0 0.18 11.6 0.0 1.2 1 0 0 1 1 1 0 TIR domain DUF4062 PF13271.6 gi|336253901|ref|YP_004597008.1| - 0.18 12.2 0.0 0.31 11.4 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4062) DnaJ PF00226.31 gi|336253902|ref|YP_004597009.1| - 6.3e-11 42.2 0.0 1.2e-10 41.4 0.0 1.3 1 0 0 1 1 1 1 DnaJ domain Arc_trans_TRASH PF08394.10 gi|336253902|ref|YP_004597009.1| - 0.02 15.2 0.1 0.02 15.2 0.1 3.2 4 0 0 4 4 4 0 Archaeal TRASH domain ATPase-cat_bd PF12156.8 gi|336253902|ref|YP_004597009.1| - 0.037 14.8 1.5 0.037 14.8 1.5 3.5 2 1 2 4 4 4 0 Putative metal-binding domain of cation transport ATPase C1_1 PF00130.22 gi|336253902|ref|YP_004597009.1| - 0.16 11.9 9.4 0.63 10.0 0.0 3.3 3 0 0 3 3 3 0 Phorbol esters/diacylglycerol binding domain (C1 domain) GPR15L PF15854.5 gi|336253902|ref|YP_004597009.1| - 0.59 10.4 0.0 0.59 10.4 0.0 2.3 2 1 0 2 2 2 0 G-protein coupled receptor ligand 15 DUF3054 PF11255.8 gi|336253903|ref|YP_004597010.1| - 6.1e-24 84.6 10.3 7.5e-24 84.4 10.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3054) DUF3185 PF11381.8 gi|336253903|ref|YP_004597010.1| - 0.088 12.8 0.6 0.088 12.8 0.6 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3185) PetG PF02529.15 gi|336253904|ref|YP_004597011.1| - 0.07 13.0 5.5 0.38 10.6 5.5 2.1 1 1 0 1 1 1 0 Cytochrome B6-F complex subunit 5 OCD_Mu_crystall PF02423.15 gi|336253905|ref|YP_004597012.1| - 1.8e-66 224.3 0.2 2.1e-66 224.0 0.2 1.1 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family F420_oxidored PF03807.17 gi|336253905|ref|YP_004597012.1| - 3.4e-05 24.3 0.0 8.3e-05 23.1 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.20 gi|336253905|ref|YP_004597012.1| - 0.00018 21.6 0.0 0.00028 20.9 0.0 1.2 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase NAD_binding_2 PF03446.15 gi|336253905|ref|YP_004597012.1| - 0.0062 16.7 0.0 0.01 16.0 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase HTH_10 PF04967.12 gi|336253906|ref|YP_004597013.1| - 1.8e-17 62.9 0.0 2.4e-17 62.4 0.0 1.2 1 0 0 1 1 1 1 HTH DNA binding domain Serglycin PF04360.12 gi|336253906|ref|YP_004597013.1| - 0.0011 18.9 0.7 0.0016 18.4 0.7 1.3 1 0 0 1 1 1 1 Serglycin AF-4 PF05110.13 gi|336253906|ref|YP_004597013.1| - 0.013 13.7 4.1 0.015 13.5 4.1 1.0 1 0 0 1 1 1 0 AF-4 proto-oncoprotein MarR_2 PF12802.7 gi|336253906|ref|YP_004597013.1| - 0.014 15.3 0.1 0.03 14.2 0.1 1.6 1 0 0 1 1 1 0 MarR family HTH_1 PF00126.27 gi|336253906|ref|YP_004597013.1| - 0.049 13.6 0.4 0.11 12.5 0.4 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Sigma70_r4 PF04545.16 gi|336253906|ref|YP_004597013.1| - 0.05 13.1 0.2 0.11 12.1 0.2 1.6 1 1 0 1 1 1 0 Sigma-70, region 4 P22_Cro PF14549.6 gi|336253906|ref|YP_004597013.1| - 0.11 12.3 0.0 0.2 11.5 0.0 1.3 1 0 0 1 1 1 0 DNA-binding transcriptional regulator Cro HTH_11 PF08279.12 gi|336253906|ref|YP_004597013.1| - 0.14 12.1 0.2 0.24 11.4 0.2 1.3 1 0 0 1 1 1 0 HTH domain Cu-oxidase_3 PF07732.15 gi|336253907|ref|YP_004597014.1| - 2.5e-08 33.9 0.0 5.6e-08 32.8 0.0 1.6 1 0 0 1 1 1 1 Multicopper oxidase Cu-oxidase_2 PF07731.14 gi|336253907|ref|YP_004597014.1| - 1.1e-06 28.4 0.0 7.7e-06 25.7 0.0 2.4 2 1 0 2 2 2 1 Multicopper oxidase TAT_signal PF10518.9 gi|336253907|ref|YP_004597014.1| - 0.005 16.6 5.3 0.018 14.9 5.3 2.0 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.9 gi|336253907|ref|YP_004597014.1| - 0.13 11.6 0.8 0.28 10.5 0.8 1.6 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal DHHA1 PF02272.19 gi|336253908|ref|YP_004597015.1| - 2.4e-12 47.5 0.1 4.2e-12 46.7 0.1 1.3 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.20 gi|336253908|ref|YP_004597015.1| - 1.4e-10 41.3 0.1 2.3e-10 40.6 0.1 1.3 1 0 0 1 1 1 1 DHH family HSP20 PF00011.21 gi|336253909|ref|YP_004597016.1| - 4.1e-24 84.7 0.1 5.5e-24 84.3 0.1 1.2 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|336253909|ref|YP_004597016.1| - 1.9e-12 46.5 0.0 3e-12 45.9 0.0 1.3 1 0 0 1 1 1 1 HSP20-like domain found in ArsA CS PF04969.16 gi|336253909|ref|YP_004597016.1| - 0.00057 20.9 0.0 0.0008 20.4 0.0 1.3 1 0 0 1 1 1 1 CS domain GvpH PF05455.11 gi|336253909|ref|YP_004597016.1| - 0.016 15.3 1.4 5 7.1 0.0 2.8 2 1 1 3 3 3 0 GvpH DUF2807 PF10988.8 gi|336253909|ref|YP_004597016.1| - 0.041 13.7 0.2 2.1 8.1 0.0 2.1 1 1 1 2 2 2 0 Putative auto-transporter adhesin, head GIN domain FKBP26_C PF18046.1 gi|336253909|ref|YP_004597016.1| - 0.16 12.1 0.0 25 5.1 0.0 2.2 2 0 0 2 2 2 0 FKBP26_C-terminal DJ-1_PfpI PF01965.24 gi|336253910|ref|YP_004597017.1| - 5.5e-14 52.3 0.3 3e-12 46.6 0.3 2.1 1 1 0 1 1 1 1 DJ-1/PfpI family ThiJ_like PF17124.5 gi|336253910|ref|YP_004597017.1| - 5.3e-09 36.0 0.0 1e-08 35.1 0.0 1.5 1 1 0 1 1 1 1 ThiJ/PfpI family-like ThuA PF06283.11 gi|336253910|ref|YP_004597017.1| - 0.027 14.7 0.0 0.028 14.7 0.0 1.2 1 0 0 1 1 1 0 Trehalose utilisation TFIIB PF00382.19 gi|336253911|ref|YP_004597018.1| - 2.7e-05 24.1 0.2 7.2e-05 22.8 0.2 1.6 1 1 0 1 1 1 1 Transcription factor TFIIB repeat Sigma70_r4 PF04545.16 gi|336253911|ref|YP_004597018.1| - 0.054 13.0 0.0 9.1 5.9 0.0 2.2 2 0 0 2 2 2 0 Sigma-70, region 4 SPW PF03779.14 gi|336253913|ref|YP_004597020.1| - 0.0011 18.5 11.9 0.2 11.2 5.9 2.6 2 2 0 2 2 2 2 SPW repeat QueT PF06177.11 gi|336253913|ref|YP_004597020.1| - 0.097 13.1 3.1 0.12 12.7 3.1 1.1 1 0 0 1 1 1 0 QueT transporter DUF2892 PF11127.8 gi|336253913|ref|YP_004597020.1| - 4.4 7.4 8.5 2.1 8.4 3.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2892) Usp PF00582.26 gi|336253914|ref|YP_004597021.1| - 5.6e-10 39.9 0.5 6.6e-10 39.6 0.5 1.1 1 0 0 1 1 1 1 Universal stress protein family ETF PF01012.21 gi|336253914|ref|YP_004597021.1| - 0.0071 16.3 0.0 1.3 8.9 0.0 2.2 2 0 0 2 2 2 2 Electron transfer flavoprotein domain Na_H_Exchanger PF00999.21 gi|336253915|ref|YP_004597022.1| - 3.5e-50 170.9 49.9 4.5e-50 170.5 49.9 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Usp PF00582.26 gi|336253915|ref|YP_004597022.1| - 1e-06 29.3 0.9 2e-06 28.4 0.2 1.8 2 0 0 2 2 2 1 Universal stress protein family AMP-binding PF00501.28 gi|336253916|ref|YP_004597023.1| - 1.1e-92 310.8 0.0 1.4e-92 310.5 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|336253916|ref|YP_004597023.1| - 4.1e-19 69.3 0.1 8e-19 68.4 0.1 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|336253916|ref|YP_004597023.1| - 4.2e-14 52.2 2.3 9.8e-14 51.0 2.3 1.7 1 0 0 1 1 1 1 Acetyl-coenzyme A synthetase N-terminus BAT PF15915.5 gi|336253917|ref|YP_004597024.1| - 1.1e-45 155.3 7.8 1.1e-45 155.3 7.8 2.9 3 0 0 3 3 3 1 GAF and HTH_10 associated domain HTH_10 PF04967.12 gi|336253917|ref|YP_004597024.1| - 1.4e-19 69.6 0.0 3.7e-19 68.3 0.0 1.8 1 0 0 1 1 1 1 HTH DNA binding domain PAS_9 PF13426.7 gi|336253917|ref|YP_004597024.1| - 1.1e-12 48.1 0.0 2.7e-12 46.9 0.0 1.6 1 0 0 1 1 1 1 PAS domain Phage_integrase PF00589.22 gi|336253917|ref|YP_004597024.1| - 2e-11 44.0 0.0 5.6e-11 42.5 0.0 1.7 2 0 0 2 2 2 1 Phage integrase family PAS_4 PF08448.10 gi|336253917|ref|YP_004597024.1| - 5.6e-10 39.4 1.5 2.6e-09 37.3 0.5 2.8 2 0 0 2 2 1 1 PAS fold PAS PF00989.25 gi|336253917|ref|YP_004597024.1| - 7.7e-10 38.8 0.0 4e-09 36.5 0.0 2.3 2 0 0 2 2 2 1 PAS fold GAF_2 PF13185.6 gi|336253917|ref|YP_004597024.1| - 4.3e-08 33.5 2.4 1.7e-06 28.4 0.3 3.2 2 1 0 2 2 2 1 GAF domain GAF_3 PF13492.6 gi|336253917|ref|YP_004597024.1| - 1.6e-07 31.7 0.0 2.8e-06 27.7 0.0 2.4 2 0 0 2 2 2 1 GAF domain PAS_10 PF13596.6 gi|336253917|ref|YP_004597024.1| - 0.0017 18.9 0.0 0.004 17.7 0.0 1.7 1 0 0 1 1 1 1 PAS domain PAS_3 PF08447.12 gi|336253917|ref|YP_004597024.1| - 0.0035 17.6 0.1 0.0095 16.2 0.1 1.8 1 0 0 1 1 1 1 PAS fold GAF PF01590.26 gi|336253917|ref|YP_004597024.1| - 0.0064 17.1 0.0 0.021 15.5 0.0 1.9 1 0 0 1 1 1 1 GAF domain HTH_20 PF12840.7 gi|336253917|ref|YP_004597024.1| - 0.0087 16.1 0.3 0.05 13.7 0.1 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain PAS_8 PF13188.7 gi|336253917|ref|YP_004597024.1| - 0.0097 15.9 0.0 0.043 13.9 0.0 2.2 1 0 0 1 1 1 1 PAS domain Sigma70_r4 PF04545.16 gi|336253917|ref|YP_004597024.1| - 0.018 14.5 0.0 0.05 13.1 0.0 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 Sigma70_r4_2 PF08281.12 gi|336253917|ref|YP_004597024.1| - 0.021 14.5 0.0 0.065 12.9 0.0 1.8 1 0 0 1 1 1 0 Sigma-70, region 4 Cep57_CLD_2 PF14197.6 gi|336253917|ref|YP_004597024.1| - 0.049 13.7 0.8 0.13 12.4 0.8 1.6 1 0 0 1 1 1 0 Centrosome localisation domain of PPC89 GntR PF00392.21 gi|336253917|ref|YP_004597024.1| - 0.07 12.8 0.4 12 5.7 0.0 3.1 3 0 0 3 3 3 0 Bacterial regulatory proteins, gntR family Ribosomal_L13e PF01294.18 gi|336253917|ref|YP_004597024.1| - 0.074 12.9 0.1 0.15 11.9 0.1 1.4 1 0 0 1 1 1 0 Ribosomal protein L13e HTH_5 PF01022.20 gi|336253917|ref|YP_004597024.1| - 0.085 12.7 0.0 0.2 11.5 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_23 PF13384.6 gi|336253917|ref|YP_004597024.1| - 0.27 11.1 2.5 2 8.3 0.0 3.5 3 0 0 3 3 2 0 Homeodomain-like domain AMP-binding PF00501.28 gi|336253918|ref|YP_004597025.1| - 9.1e-91 304.5 0.1 1.1e-90 304.3 0.1 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|336253918|ref|YP_004597025.1| - 3.8e-22 79.1 2.5 9.3e-22 77.8 2.5 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|336253918|ref|YP_004597025.1| - 2.1e-14 53.1 2.2 6.4e-14 51.6 2.2 1.9 1 0 0 1 1 1 1 Acetyl-coenzyme A synthetase N-terminus DUF4212 PF13937.6 gi|336253919|ref|YP_004597026.1| - 8e-22 77.4 0.7 9.9e-22 77.1 0.7 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4212) SSF PF00474.17 gi|336253920|ref|YP_004597027.1| - 1.2e-51 175.9 31.1 1.8e-51 175.3 31.1 1.3 1 0 0 1 1 1 1 Sodium:solute symporter family Usp PF00582.26 gi|336253921|ref|YP_004597028.1| - 7.5e-36 123.7 1.3 8.7e-36 123.5 1.3 1.0 1 0 0 1 1 1 1 Universal stress protein family MGS PF02142.22 gi|336253921|ref|YP_004597028.1| - 0.073 13.3 0.0 0.19 11.9 0.0 1.7 2 0 0 2 2 2 0 MGS-like domain CBS PF00571.28 gi|336253921|ref|YP_004597028.1| - 0.39 11.2 2.3 11 6.6 0.0 2.6 2 1 1 3 3 3 0 CBS domain HalOD1 PF18545.1 gi|336253923|ref|YP_004597030.1| - 7.3e-22 77.4 0.1 1.1e-21 76.8 0.1 1.3 1 0 0 1 1 1 1 Halobacterial output domain 1 HTH_10 PF04967.12 gi|336253924|ref|YP_004597031.1| - 3.5e-15 55.6 0.1 5.3e-15 55.0 0.1 1.3 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|336253924|ref|YP_004597031.1| - 4.8e-09 36.3 0.0 7.6e-09 35.6 0.0 1.2 1 0 0 1 1 1 1 GAF and HTH_10 associated domain Sigma70_r4 PF04545.16 gi|336253924|ref|YP_004597031.1| - 2.2e-08 33.5 0.1 4.6e-08 32.5 0.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.12 gi|336253924|ref|YP_004597031.1| - 2.5e-05 23.8 0.0 0.00024 20.7 0.0 2.1 2 0 0 2 2 2 1 Sigma-70, region 4 MarR_2 PF12802.7 gi|336253924|ref|YP_004597031.1| - 6.9e-05 22.7 1.1 0.00022 21.1 1.1 1.9 1 1 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|336253924|ref|YP_004597031.1| - 0.0091 15.5 0.0 0.017 14.7 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_23 PF13384.6 gi|336253924|ref|YP_004597031.1| - 0.025 14.4 0.1 0.039 13.7 0.1 1.3 1 0 0 1 1 1 0 Homeodomain-like domain HTH_AsnC-type PF13404.6 gi|336253924|ref|YP_004597031.1| - 0.036 13.9 0.2 0.071 13.0 0.2 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|336253924|ref|YP_004597031.1| - 0.051 13.6 0.1 0.12 12.4 0.1 1.7 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_11 PF08279.12 gi|336253924|ref|YP_004597031.1| - 0.061 13.3 0.0 0.061 13.3 0.0 2.1 3 0 0 3 3 3 0 HTH domain DUF2270 PF10028.9 gi|336253926|ref|YP_004597033.1| - 1e-75 253.4 5.7 1.2e-75 253.2 5.7 1.0 1 0 0 1 1 1 1 Predicted integral membrane protein (DUF2270) 7TM_GPCR_Str PF10326.9 gi|336253926|ref|YP_004597033.1| - 0.12 11.7 0.0 0.21 10.9 0.0 1.3 1 0 0 1 1 1 0 Serpentine type 7TM GPCR chemoreceptor Str DUF485 PF04341.12 gi|336253926|ref|YP_004597033.1| - 5.5 7.0 6.9 0.74 9.8 0.6 2.4 2 1 0 2 2 2 0 Protein of unknown function, DUF485 MASE3 PF17159.4 gi|336253926|ref|YP_004597033.1| - 6.1 6.4 7.9 3.2 7.3 0.7 2.1 2 0 0 2 2 2 0 Membrane-associated sensor domain HalOD1 PF18545.1 gi|336253927|ref|YP_004597034.1| - 3.9e-22 78.3 0.1 5.4e-22 77.9 0.1 1.2 1 0 0 1 1 1 1 Halobacterial output domain 1 DUF2587 PF10759.9 gi|336253928|ref|YP_004597035.1| - 0.083 12.4 0.1 0.12 11.9 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2587) HTH_10 PF04967.12 gi|336253929|ref|YP_004597036.1| - 8.2e-15 54.3 0.0 1.3e-14 53.7 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|336253929|ref|YP_004597036.1| - 7.5e-13 48.6 3.3 9.6e-13 48.3 3.3 1.2 1 0 0 1 1 1 1 GAF and HTH_10 associated domain Sigma70_r4 PF04545.16 gi|336253929|ref|YP_004597036.1| - 1.4e-05 24.5 0.1 2.8e-05 23.5 0.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_AsnC-type PF13404.6 gi|336253929|ref|YP_004597036.1| - 0.04 13.7 0.1 0.075 12.9 0.1 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain ProRS-C_2 PF09181.10 gi|336253930|ref|YP_004597037.1| - 0.078 13.1 0.1 0.11 12.7 0.1 1.2 1 0 0 1 1 1 0 Prolyl-tRNA synthetase, C-terminal FA_desaturase PF00487.24 gi|336253931|ref|YP_004597038.1| - 0.11 12.3 2.2 0.13 12.1 2.2 1.0 1 0 0 1 1 1 0 Fatty acid desaturase Cupin_2 PF07883.11 gi|336253932|ref|YP_004597039.1| - 5.9e-17 61.1 0.0 8.8e-17 60.6 0.0 1.3 1 0 0 1 1 1 1 Cupin domain Cupin_3 PF05899.12 gi|336253932|ref|YP_004597039.1| - 3.5e-05 23.4 0.0 6.5e-05 22.5 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF861) AraC_binding PF02311.19 gi|336253932|ref|YP_004597039.1| - 0.0083 16.0 0.0 0.012 15.6 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_1 PF00190.22 gi|336253932|ref|YP_004597039.1| - 0.23 11.1 0.0 0.39 10.3 0.0 1.3 1 1 0 1 1 1 0 Cupin Trm56 PF01994.16 gi|336253933|ref|YP_004597040.1| - 4.4e-46 155.7 0.0 6.1e-46 155.2 0.0 1.2 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 TAT_signal PF10518.9 gi|336253934|ref|YP_004597041.1| - 0.022 14.6 0.7 0.052 13.4 0.7 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Dyp_perox PF04261.12 gi|336253935|ref|YP_004597042.1| - 0.02 13.9 0.0 0.084 11.9 0.0 1.9 1 1 0 1 1 1 0 Dyp-type peroxidase family TAT_signal PF10518.9 gi|336253935|ref|YP_004597042.1| - 0.063 13.1 5.6 0.14 12.0 5.6 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence TFIIE_alpha PF02002.17 gi|336253938|ref|YP_004597045.1| - 3.3e-19 68.7 0.0 7.3e-19 67.6 0.1 1.6 2 0 0 2 2 2 1 TFIIE alpha subunit Sigma70_r3 PF04539.16 gi|336253938|ref|YP_004597045.1| - 0.0033 17.5 0.1 0.0074 16.4 0.1 1.7 1 0 0 1 1 1 1 Sigma-70 region 3 Rad50_zn_hook PF04423.14 gi|336253938|ref|YP_004597045.1| - 0.0054 16.5 1.0 0.027 14.3 0.1 2.3 2 0 0 2 2 2 1 Rad50 zinc hook motif DNA_ligase_ZBD PF03119.16 gi|336253938|ref|YP_004597045.1| - 0.0088 16.0 0.0 0.017 15.1 0.0 1.6 1 0 0 1 1 1 1 NAD-dependent DNA ligase C4 zinc finger domain Zn-ribbon_8 PF09723.10 gi|336253938|ref|YP_004597045.1| - 0.049 13.8 1.8 0.095 12.8 1.8 1.5 1 0 0 1 1 1 0 Zinc ribbon domain zinc-ribbons_6 PF07191.12 gi|336253938|ref|YP_004597045.1| - 0.05 13.6 0.3 0.087 12.8 0.3 1.3 1 0 0 1 1 1 0 zinc-ribbons zf-ribbon_3 PF13248.6 gi|336253938|ref|YP_004597045.1| - 0.054 12.9 0.1 0.1 12.1 0.1 1.4 1 0 0 1 1 1 0 zinc-ribbon domain HTH_20 PF12840.7 gi|336253938|ref|YP_004597045.1| - 0.077 13.1 0.5 0.48 10.5 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain HypA PF01155.19 gi|336253938|ref|YP_004597045.1| - 0.11 12.5 0.1 0.17 12.0 0.1 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf_UBZ PF18439.1 gi|336253938|ref|YP_004597045.1| - 0.12 12.0 0.9 7.5 6.2 0.1 2.5 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-Mss51 PF13824.6 gi|336253938|ref|YP_004597045.1| - 0.22 11.7 2.2 0.76 9.9 1.5 2.3 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 TF_Zn_Ribbon PF08271.12 gi|336253938|ref|YP_004597045.1| - 0.46 10.0 3.4 2.6 7.6 2.9 2.5 1 1 1 2 2 2 0 TFIIB zinc-binding DUF2110 PF09883.9 gi|336253939|ref|YP_004597046.1| - 4e-95 317.6 0.0 4.6e-95 317.5 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2110) DUF4307 PF14155.6 gi|336253940|ref|YP_004597047.1| - 0.002 17.9 0.0 0.57 10.0 0.0 2.9 4 0 0 4 4 4 2 Domain of unknown function (DUF4307) CheW PF01584.19 gi|336253941|ref|YP_004597048.1| - 4.6e-14 52.2 0.0 5.5e-14 52.0 0.0 1.0 1 0 0 1 1 1 1 CheW-like domain Cytomega_US3 PF05963.11 gi|336253941|ref|YP_004597048.1| - 0.083 12.5 0.0 0.1 12.3 0.0 1.3 1 0 0 1 1 1 0 Cytomegalovirus US3 protein CheW PF01584.19 gi|336253942|ref|YP_004597049.1| - 1.1e-17 63.9 0.0 1.9e-17 63.2 0.0 1.3 1 0 0 1 1 1 1 CheW-like domain Response_reg PF00072.24 gi|336253943|ref|YP_004597050.1| - 4.1e-31 107.4 0.1 4.6e-31 107.3 0.1 1.0 1 0 0 1 1 1 1 Response regulator receiver domain B12-binding PF02310.19 gi|336253943|ref|YP_004597050.1| - 0.021 14.8 0.0 0.027 14.5 0.0 1.2 1 0 0 1 1 1 0 B12 binding domain CheB_methylest PF01339.17 gi|336253944|ref|YP_004597051.1| - 6.1e-54 182.3 0.1 1.1e-53 181.5 0.1 1.4 1 0 0 1 1 1 1 CheB methylesterase Response_reg PF00072.24 gi|336253944|ref|YP_004597051.1| - 2.1e-23 82.6 0.2 4.2e-23 81.7 0.2 1.5 1 0 0 1 1 1 1 Response regulator receiver domain SRRM_C PF15230.6 gi|336253944|ref|YP_004597051.1| - 0.24 12.0 7.3 0.41 11.3 7.3 1.4 1 0 0 1 1 1 0 Serine/arginine repetitive matrix protein C-terminus Hpt PF01627.23 gi|336253945|ref|YP_004597052.1| - 7e-20 71.1 3.9 2.8e-19 69.2 0.2 3.6 3 0 0 3 3 3 1 Hpt domain HATPase_c PF02518.26 gi|336253945|ref|YP_004597052.1| - 3.8e-18 66.0 0.1 1.2e-17 64.5 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CheW PF01584.19 gi|336253945|ref|YP_004597052.1| - 7.5e-08 32.1 0.6 2.4e-07 30.5 0.6 1.9 1 1 0 1 1 1 1 CheW-like domain H-kinase_dim PF02895.14 gi|336253945|ref|YP_004597052.1| - 1.7e-07 31.5 5.3 4.8e-07 30.1 5.3 1.9 1 0 0 1 1 1 1 Signal transducing histidine kinase, homodimeric domain P2 PF07194.11 gi|336253945|ref|YP_004597052.1| - 9.6e-06 25.6 2.1 0.00011 22.2 0.0 3.1 2 0 0 2 2 2 1 P2 response regulator binding domain HATPase_c_2 PF13581.6 gi|336253945|ref|YP_004597052.1| - 0.0011 18.9 0.8 0.0011 18.9 0.8 4.1 6 0 0 6 6 6 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 gi|336253945|ref|YP_004597052.1| - 0.004 17.0 0.0 0.015 15.1 0.0 2.0 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Serglycin PF04360.12 gi|336253945|ref|YP_004597052.1| - 0.19 11.7 3.7 0.63 10.0 3.7 1.9 1 0 0 1 1 1 0 Serglycin CheC PF04509.12 gi|336253946|ref|YP_004597053.1| - 2.3e-13 49.8 0.1 8.9e-13 47.9 0.0 2.0 2 0 0 2 2 2 1 CheC-like family CheX PF13690.6 gi|336253946|ref|YP_004597053.1| - 1.4e-06 28.4 0.1 2.7e-06 27.5 0.1 1.5 1 0 0 1 1 1 1 Chemotaxis phosphatase CheX CheC PF04509.12 gi|336253947|ref|YP_004597054.1| - 2.7e-19 68.8 0.7 4.9e-13 48.8 0.0 2.5 2 0 0 2 2 2 2 CheC-like family CheX PF13690.6 gi|336253947|ref|YP_004597054.1| - 1.4e-14 54.0 0.9 8.3e-07 29.1 0.2 2.3 2 0 0 2 2 2 2 Chemotaxis phosphatase CheX CheD PF03975.13 gi|336253948|ref|YP_004597055.1| - 3.1e-32 110.9 0.0 3.9e-32 110.6 0.0 1.1 1 0 0 1 1 1 1 CheD chemotactic sensory transduction CheR PF01739.18 gi|336253949|ref|YP_004597056.1| - 2e-47 161.2 0.0 2.7e-47 160.8 0.0 1.2 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain CheR_N PF03705.15 gi|336253949|ref|YP_004597056.1| - 7.3e-11 41.6 3.5 1.2e-10 40.9 1.6 2.3 2 0 0 2 2 2 1 CheR methyltransferase, all-alpha domain Methyltransf_12 PF08242.12 gi|336253949|ref|YP_004597056.1| - 9e-09 36.0 0.1 3.9e-06 27.5 0.1 2.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|336253949|ref|YP_004597056.1| - 2e-07 31.6 0.1 0.00091 19.9 0.0 3.0 2 2 1 3 3 3 2 Methyltransferase domain Methyltransf_31 PF13847.6 gi|336253949|ref|YP_004597056.1| - 4.8e-06 26.4 0.0 0.00023 21.0 0.0 2.2 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|336253949|ref|YP_004597056.1| - 7.4e-06 26.5 0.1 0.0041 17.8 0.1 2.7 1 1 0 1 1 1 1 Methyltransferase domain NodS PF05401.11 gi|336253949|ref|YP_004597056.1| - 0.041 13.5 0.0 0.062 12.9 0.0 1.3 1 0 0 1 1 1 0 Nodulation protein S (NodS) TMEM171 PF15471.6 gi|336253951|ref|YP_004597058.1| - 0.012 14.7 0.0 0.019 14.0 0.0 1.2 1 0 0 1 1 1 0 Transmembrane protein family 171 DUF2976 PF11190.8 gi|336253951|ref|YP_004597058.1| - 0.023 14.5 0.1 0.048 13.5 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2976) EF-hand_5 PF13202.6 gi|336253952|ref|YP_004597059.1| - 0.22 11.1 1.2 0.45 10.1 0.1 1.9 2 0 0 2 2 2 0 EF hand Nramp PF01566.18 gi|336253954|ref|YP_004597061.1| - 0.024 13.6 0.0 0.03 13.3 0.0 1.1 1 0 0 1 1 1 0 Natural resistance-associated macrophage protein PXT1 PF15214.6 gi|336253954|ref|YP_004597061.1| - 0.026 14.9 0.1 0.051 13.9 0.1 1.4 1 0 0 1 1 1 0 Peroxisomal testis-specific protein 1 DUF1918 PF08940.11 gi|336253954|ref|YP_004597061.1| - 0.039 13.6 0.0 0.11 12.1 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF1918) DUF1923 PF09083.10 gi|336253955|ref|YP_004597062.1| - 0.2 11.4 0.0 0.33 10.7 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1923) T2SSF PF00482.23 gi|336253956|ref|YP_004597063.1| - 9.5e-30 103.1 10.5 2.3e-16 59.9 0.5 3.1 3 0 0 3 3 3 2 Type II secretion system (T2SS), protein F MnmE_helical PF12631.7 gi|336253956|ref|YP_004597063.1| - 0.087 13.0 0.0 0.2 11.8 0.0 1.6 1 0 0 1 1 1 0 MnmE helical domain Orf78 PF06024.12 gi|336253956|ref|YP_004597063.1| - 0.3 11.4 1.5 1.9 8.8 0.2 2.5 2 0 0 2 2 2 0 Orf78 (ac78) PMP1_2 PF08114.11 gi|336253956|ref|YP_004597063.1| - 0.61 9.9 0.0 0.61 9.9 0.0 3.0 3 0 0 3 3 3 0 ATPase proteolipid family DUF2524 PF10732.9 gi|336253956|ref|YP_004597063.1| - 0.87 9.9 3.7 0.66 10.3 0.4 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2524) EMP24_GP25L PF01105.24 gi|336253956|ref|YP_004597063.1| - 1.6 8.6 3.8 7.7 6.4 0.2 2.3 2 0 0 2 2 2 0 emp24/gp25L/p24 family/GOLD T2SSE PF00437.20 gi|336253957|ref|YP_004597064.1| - 8.5e-43 146.4 0.0 1.3e-42 145.7 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.6 gi|336253957|ref|YP_004597064.1| - 0.011 15.5 0.1 0.022 14.5 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain GerPC PF10737.9 gi|336253957|ref|YP_004597064.1| - 0.014 15.4 0.5 0.038 14.0 0.5 1.7 1 0 0 1 1 1 0 Spore germination protein GerPC MttA_Hcf106 PF02416.16 gi|336253958|ref|YP_004597065.1| - 4.8e-14 51.4 2.4 5.6e-14 51.2 2.4 1.3 1 1 0 1 1 1 1 mttA/Hcf106 family GP24_25 PF17388.2 gi|336253958|ref|YP_004597065.1| - 0.098 12.6 0.7 0.12 12.4 0.7 1.2 1 0 0 1 1 1 0 Tail assembly gene products 24 & 25 AhpC-TSA PF00578.21 gi|336253959|ref|YP_004597066.1| - 5.2e-31 107.2 0.0 6e-31 106.9 0.0 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|336253959|ref|YP_004597066.1| - 2.7e-21 75.8 0.0 3.2e-21 75.6 0.0 1.0 1 0 0 1 1 1 1 Redoxin DUF899 PF05988.12 gi|336253959|ref|YP_004597066.1| - 0.0012 18.4 0.0 0.0017 18.0 0.0 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF899) HD PF01966.22 gi|336253960|ref|YP_004597067.1| - 1e-08 35.4 3.2 1.8e-08 34.7 3.2 1.4 1 0 0 1 1 1 1 HD domain TrmB PF01978.19 gi|336253961|ref|YP_004597068.1| - 6.6e-06 25.9 0.1 7.7e-06 25.7 0.1 1.1 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|336253961|ref|YP_004597068.1| - 0.004 17.0 0.1 0.0051 16.7 0.1 1.2 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|336253961|ref|YP_004597068.1| - 0.0086 15.9 0.2 0.014 15.2 0.2 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.22 gi|336253961|ref|YP_004597068.1| - 0.013 15.4 0.0 0.017 15.0 0.0 1.2 1 0 0 1 1 1 0 MarR family Rrf2 PF02082.20 gi|336253961|ref|YP_004597068.1| - 0.022 15.1 0.0 0.028 14.7 0.0 1.1 1 0 0 1 1 1 0 Transcriptional regulator HTH_42 PF06224.12 gi|336253961|ref|YP_004597068.1| - 0.033 13.8 0.0 0.033 13.7 0.0 1.0 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_36 PF13730.6 gi|336253961|ref|YP_004597068.1| - 0.12 12.4 0.1 0.36 10.8 0.1 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain Penicillinase_R PF03965.16 gi|336253961|ref|YP_004597068.1| - 0.14 12.6 0.0 0.16 12.3 0.0 1.1 1 0 0 1 1 1 0 Penicillinase repressor DUF1427 PF07235.11 gi|336253962|ref|YP_004597069.1| - 8e-06 25.7 1.8 9.7e-06 25.5 1.8 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1427) DUF5313 PF17240.2 gi|336253963|ref|YP_004597070.1| - 0.11 13.0 0.7 0.12 12.8 0.7 1.0 1 0 0 1 1 1 0 Family of unknown function (DUF5313) FAD_binding_2 PF00890.24 gi|336253964|ref|YP_004597071.1| - 1.4e-121 406.5 8.3 2.3e-121 405.8 8.3 1.3 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.20 gi|336253964|ref|YP_004597071.1| - 2.8e-37 127.6 0.2 4.6e-37 126.9 0.2 1.4 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term Pyr_redox_2 PF07992.14 gi|336253964|ref|YP_004597071.1| - 7.5e-09 35.2 5.4 0.0021 17.4 3.0 2.8 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|336253964|ref|YP_004597071.1| - 0.00083 18.2 0.4 0.00083 18.2 0.4 2.0 2 0 0 2 2 2 1 HI0933-like protein FAD_oxidored PF12831.7 gi|336253964|ref|YP_004597071.1| - 0.0011 18.4 4.1 0.0011 18.4 4.1 2.0 3 0 0 3 3 3 1 FAD dependent oxidoreductase GIDA PF01134.22 gi|336253964|ref|YP_004597071.1| - 0.0015 17.7 4.4 0.0029 16.8 4.4 1.5 1 0 0 1 1 1 1 Glucose inhibited division protein A FAD_binding_3 PF01494.19 gi|336253964|ref|YP_004597071.1| - 0.0025 17.1 1.1 0.0061 15.9 1.1 1.6 1 0 0 1 1 1 1 FAD binding domain DAO PF01266.24 gi|336253964|ref|YP_004597071.1| - 0.0049 16.5 8.7 0.033 13.8 8.0 2.4 1 1 0 1 1 1 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|336253964|ref|YP_004597071.1| - 0.0074 15.6 1.9 0.071 12.3 0.4 2.5 2 0 0 2 2 2 1 Thi4 family Pyr_redox_3 PF13738.6 gi|336253964|ref|YP_004597071.1| - 0.01 15.1 1.6 0.017 14.4 0.5 1.9 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|336253964|ref|YP_004597071.1| - 0.059 12.7 1.3 0.13 11.5 1.3 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Fer2_3 PF13085.6 gi|336253965|ref|YP_004597072.1| - 1.2e-33 115.4 0.5 3.6e-33 113.8 0.0 2.0 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer4_8 PF13183.6 gi|336253965|ref|YP_004597072.1| - 4.8e-13 49.4 3.5 1.2e-12 48.0 3.5 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|336253965|ref|YP_004597072.1| - 4.4e-08 33.1 3.7 1.1e-07 31.8 3.7 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|336253965|ref|YP_004597072.1| - 1e-06 29.2 1.2 2.8e-06 27.8 0.3 2.2 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|336253965|ref|YP_004597072.1| - 3.1e-05 24.4 3.7 7.7e-05 23.2 3.7 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|336253965|ref|YP_004597072.1| - 0.0011 19.1 6.6 0.0011 19.1 6.6 2.3 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|336253965|ref|YP_004597072.1| - 0.0092 15.7 7.2 0.58 9.9 0.5 2.7 1 1 1 2 2 2 2 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_16 PF13484.6 gi|336253965|ref|YP_004597072.1| - 0.023 15.6 11.5 0.063 14.2 7.3 3.0 2 1 1 3 3 3 0 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|336253965|ref|YP_004597072.1| - 0.33 11.5 8.7 0.65 10.6 2.4 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|336253965|ref|YP_004597072.1| - 0.83 9.9 9.5 4.1 7.6 0.2 2.7 2 1 0 3 3 3 0 4Fe-4S dicluster domain Fer4 PF00037.27 gi|336253965|ref|YP_004597072.1| - 0.98 9.3 9.5 3.1 7.8 2.9 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_6 PF12837.7 gi|336253965|ref|YP_004597072.1| - 1.8 8.8 7.4 3.1 8.0 2.0 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|336253965|ref|YP_004597072.1| - 3.6 8.7 11.9 2.1 9.5 0.4 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.6 gi|336253965|ref|YP_004597072.1| - 5.4 7.8 9.8 22 5.9 0.1 3.8 3 1 0 3 3 3 0 4Fe-4S single cluster domain Fer4_21 PF14697.6 gi|336253965|ref|YP_004597072.1| - 6.3 7.0 10.1 1.2e+02 3.0 10.1 2.4 1 1 0 1 1 1 0 4Fe-4S dicluster domain Sdh_cyt PF01127.22 gi|336253966|ref|YP_004597073.1| - 5.2e-10 39.4 6.3 6.5e-10 39.1 6.3 1.1 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DUF4536 PF15055.6 gi|336253966|ref|YP_004597073.1| - 0.29 11.4 2.7 1 9.7 2.7 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF4536) Sdh_cyt PF01127.22 gi|336253967|ref|YP_004597074.1| - 8.8e-23 80.6 3.7 1.1e-22 80.4 3.7 1.1 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AstE_AspA PF04952.14 gi|336253968|ref|YP_004597075.1| - 9.4e-67 225.1 0.0 1.2e-66 224.8 0.0 1.0 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family Biotin_lipoyl PF00364.22 gi|336253968|ref|YP_004597075.1| - 0.13 12.1 0.0 0.41 10.5 0.0 1.8 1 1 0 1 1 1 0 Biotin-requiring enzyme Acetyltransf_1 PF00583.25 gi|336253969|ref|YP_004597076.1| - 4e-10 40.0 0.0 6.5e-10 39.3 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|336253969|ref|YP_004597076.1| - 2.2e-09 37.3 0.0 3.2e-09 36.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|336253969|ref|YP_004597076.1| - 7.1e-09 36.0 0.1 1.5e-08 34.9 0.1 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|336253969|ref|YP_004597076.1| - 9.6e-06 25.7 0.0 2.1e-05 24.6 0.0 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|336253969|ref|YP_004597076.1| - 0.00045 20.1 0.0 0.0015 18.5 0.0 1.8 2 0 0 2 2 2 1 FR47-like protein Acetyltransf_4 PF13420.7 gi|336253969|ref|YP_004597076.1| - 0.0036 17.4 0.0 0.0055 16.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|336253969|ref|YP_004597076.1| - 0.013 15.6 2.7 0.21 11.7 0.5 2.2 1 1 1 2 2 2 0 Acetyltransferase (GNAT) domain AstA PF04958.12 gi|336253969|ref|YP_004597076.1| - 0.074 11.6 0.0 1.6 7.2 0.0 2.3 2 1 1 3 3 3 0 Arginine N-succinyltransferase beta subunit Polysacc_synt PF01943.17 gi|336253970|ref|YP_004597077.1| - 5.7e-30 104.6 14.5 5.7e-30 104.6 14.5 2.4 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.6 gi|336253970|ref|YP_004597077.1| - 2.1e-24 86.3 2.9 2.1e-24 86.3 2.9 2.2 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|336253970|ref|YP_004597077.1| - 1.8e-19 70.2 20.1 1.8e-19 70.2 20.1 4.0 3 1 0 4 4 4 2 Polysaccharide biosynthesis C-terminal domain MatE PF01554.18 gi|336253970|ref|YP_004597077.1| - 5.7e-06 26.1 1.0 5.7e-06 26.1 1.0 3.7 3 2 0 3 3 3 2 MatE Mn_catalase PF05067.12 gi|336253972|ref|YP_004597079.1| - 3.5e-80 269.0 0.1 4.2e-80 268.8 0.1 1.0 1 0 0 1 1 1 1 Manganese containing catalase Rubrerythrin PF02915.17 gi|336253972|ref|YP_004597079.1| - 0.011 16.1 0.1 0.027 14.9 0.2 1.6 2 0 0 2 2 2 0 Rubrerythrin Foie-gras_1 PF11817.8 gi|336253972|ref|YP_004597079.1| - 0.029 14.0 0.1 0.04 13.5 0.1 1.2 1 0 0 1 1 1 0 Foie gras liver health family 1 Ferritin PF00210.24 gi|336253972|ref|YP_004597079.1| - 0.11 12.5 4.2 0.054 13.4 1.3 2.0 2 1 0 2 2 2 0 Ferritin-like domain RimK PF08443.11 gi|336253973|ref|YP_004597080.1| - 2.1e-22 79.7 0.0 3.6e-22 78.9 0.0 1.4 1 0 0 1 1 1 1 RimK-like ATP-grasp domain Zn_protease PF05618.11 gi|336253973|ref|YP_004597080.1| - 6.6e-10 39.0 0.7 1.6e-07 31.3 0.1 2.3 1 1 1 2 2 2 2 Putative ATP-dependant zinc protease GSH-S_ATP PF02955.16 gi|336253973|ref|YP_004597080.1| - 3.6e-08 33.0 0.0 6.1e-08 32.3 0.0 1.4 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.14 gi|336253973|ref|YP_004597080.1| - 3.4e-07 30.4 0.0 1.5e-06 28.4 0.0 2.1 2 0 0 2 2 2 1 ATP-grasp domain R2K_3 PF14243.6 gi|336253973|ref|YP_004597080.1| - 3.5e-05 23.9 1.1 8.4e-05 22.7 1.1 1.6 1 0 0 1 1 1 1 ATP-grasp domain, R2K clade family 3 gag-asp_proteas PF13975.6 gi|336253973|ref|YP_004597080.1| - 0.00063 20.3 0.4 0.0021 18.6 0.2 2.0 2 0 0 2 2 2 1 gag-polyprotein putative aspartyl protease R2K_2 PF18299.1 gi|336253973|ref|YP_004597080.1| - 0.0064 16.4 0.2 0.013 15.3 0.2 1.4 1 0 0 1 1 1 1 ATP-grasp domain, R2K clade family 2 DUF5488 PF17590.2 gi|336253973|ref|YP_004597080.1| - 0.024 14.4 0.3 0.076 12.8 0.0 2.0 2 0 0 2 2 2 0 Family of unknown function (DUF5488) Asp_protease_2 PF13650.6 gi|336253973|ref|YP_004597080.1| - 0.046 14.4 2.7 0.066 13.9 0.8 2.3 3 0 0 3 3 3 0 Aspartyl protease ATPgrasp_YheCD PF14398.6 gi|336253973|ref|YP_004597080.1| - 0.18 11.0 0.0 0.75 9.0 0.0 2.1 1 1 0 1 1 1 0 YheC/D like ATP-grasp PRC PF05239.16 gi|336253974|ref|YP_004597081.1| - 9.9e-10 38.4 0.0 1.2e-09 38.1 0.0 1.1 1 0 0 1 1 1 1 PRC-barrel domain Cadherin_4 PF17803.1 gi|336253974|ref|YP_004597081.1| - 0.1 13.2 0.4 0.19 12.4 0.2 1.5 2 0 0 2 2 2 0 Bacterial cadherin-like domain peroxidase PF00141.23 gi|336253975|ref|YP_004597082.1| - 6.9e-88 294.2 0.0 9.1e-50 169.5 0.0 2.2 2 0 0 2 2 2 2 Peroxidase ChapFlgA PF13144.6 gi|336253976|ref|YP_004597083.1| - 0.14 12.2 5.1 3.9 7.6 0.3 2.7 2 0 0 2 2 2 0 Chaperone for flagella basal body P-ring formation HhH-GPD PF00730.25 gi|336253977|ref|YP_004597084.1| - 1.3e-15 57.8 0.0 1.7e-15 57.4 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein DUF2238 PF09997.9 gi|336253978|ref|YP_004597085.1| - 2.2e-05 24.3 2.1 0.00059 19.7 2.0 2.2 1 1 0 1 1 1 1 Predicted membrane protein (DUF2238) SK_channel PF03530.14 gi|336253979|ref|YP_004597086.1| - 0.56 10.2 5.8 4.7 7.2 2.7 2.4 2 1 0 2 2 2 0 Calcium-activated SK potassium channel DUF5357 PF17310.2 gi|336253979|ref|YP_004597086.1| - 2.3 6.7 7.6 0.22 10.0 2.2 1.8 2 0 0 2 2 2 0 Family of unknown function (DUF5357) YdjM PF04307.14 gi|336253980|ref|YP_004597087.1| - 6.8e-06 25.5 19.5 3.3e-05 23.3 14.1 2.9 1 1 1 2 2 2 1 LexA-binding, inner membrane-associated putative hydrolase DUF4184 PF13803.6 gi|336253980|ref|YP_004597087.1| - 3.5 7.3 9.7 1.1 8.9 3.7 2.6 2 1 1 3 3 3 0 Domain of unknown function (DUF4184) Astro_capsid_p PF12226.8 gi|336253981|ref|YP_004597088.1| - 1.2 8.2 9.9 1.4 8.0 9.9 1.1 1 0 0 1 1 1 0 Turkey astrovirus capsid protein Cwf_Cwc_15 PF04889.12 gi|336253981|ref|YP_004597088.1| - 7.5 6.2 15.8 8.7 6.0 15.8 1.1 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein Acyl-CoA_dh_1 PF00441.24 gi|336253982|ref|YP_004597089.1| - 4e-52 176.4 3.5 6.7e-52 175.7 3.5 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|336253982|ref|YP_004597089.1| - 4.1e-36 124.1 0.1 1.3e-35 122.4 0.1 1.9 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.11 gi|336253982|ref|YP_004597089.1| - 1.4e-28 99.8 4.6 2.2e-28 99.2 4.6 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|336253982|ref|YP_004597089.1| - 3.8e-26 91.1 0.0 7.8e-26 90.1 0.0 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain HpaB PF03241.13 gi|336253982|ref|YP_004597089.1| - 0.035 13.2 0.0 0.059 12.5 0.0 1.3 1 0 0 1 1 1 0 4-hydroxyphenylacetate 3-hydroxylase C terminal Acetyltransf_CG PF14542.6 gi|336253982|ref|YP_004597089.1| - 0.036 14.2 0.7 0.37 11.0 0.2 2.6 2 1 0 3 3 3 0 GCN5-related N-acetyl-transferase S-l_SbsC_C PF18316.1 gi|336253982|ref|YP_004597089.1| - 0.082 13.4 0.4 20 5.8 0.2 2.7 2 0 0 2 2 2 0 S-layer protein SbsC C-terminal domain 2OG-FeII_Oxy_2 PF13532.6 gi|336253982|ref|YP_004597089.1| - 0.17 12.0 0.0 0.4 10.8 0.0 1.5 1 0 0 1 1 1 0 2OG-Fe(II) oxygenase superfamily 3HCDH_N PF02737.18 gi|336253983|ref|YP_004597090.1| - 1.2e-68 230.6 1.6 1.7e-68 230.0 1.6 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ECH_1 PF00378.20 gi|336253983|ref|YP_004597090.1| - 1.9e-61 207.6 0.0 4.2e-61 206.5 0.0 1.5 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase 3HCDH PF00725.22 gi|336253983|ref|YP_004597090.1| - 1.6e-50 169.7 1.1 1.9e-31 108.6 0.0 3.7 3 0 0 3 3 3 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ECH_2 PF16113.5 gi|336253983|ref|YP_004597090.1| - 1e-36 127.2 0.9 1.7e-32 113.3 0.0 3.1 2 1 1 3 3 3 2 Enoyl-CoA hydratase/isomerase NAD_Gly3P_dh_N PF01210.23 gi|336253983|ref|YP_004597090.1| - 4e-08 33.4 0.1 7.8e-08 32.4 0.1 1.5 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_2 PF03446.15 gi|336253983|ref|YP_004597090.1| - 1.7e-07 31.6 0.9 5.8e-07 29.8 0.9 2.0 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|336253983|ref|YP_004597090.1| - 5.2e-05 23.7 3.3 0.00013 22.5 2.0 2.3 2 1 0 2 2 1 1 NADP oxidoreductase coenzyme F420-dependent UDPG_MGDP_dh_N PF03721.14 gi|336253983|ref|YP_004597090.1| - 0.0067 16.0 0.1 0.011 15.3 0.1 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain OTCace PF00185.24 gi|336253983|ref|YP_004597090.1| - 0.0069 16.5 0.4 0.015 15.4 0.4 1.5 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Pyr_redox_2 PF07992.14 gi|336253983|ref|YP_004597090.1| - 0.032 13.5 0.1 0.055 12.7 0.1 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase 2-Hacid_dh_C PF02826.19 gi|336253983|ref|YP_004597090.1| - 0.063 12.6 3.9 0.55 9.6 1.9 2.7 2 1 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|336253983|ref|YP_004597090.1| - 0.066 12.5 2.0 0.25 10.6 0.6 2.5 2 1 1 3 3 3 0 Alanine dehydrogenase/PNT, C-terminal domain XdhC_C PF13478.6 gi|336253983|ref|YP_004597090.1| - 0.073 13.6 0.0 0.14 12.7 0.0 1.5 1 0 0 1 1 1 0 XdhC Rossmann domain PALP PF00291.25 gi|336253983|ref|YP_004597090.1| - 0.083 12.3 0.2 0.21 11.0 0.2 1.6 1 0 0 1 1 1 0 Pyridoxal-phosphate dependent enzyme DUF3645 PF12359.8 gi|336253983|ref|YP_004597090.1| - 0.086 12.2 0.0 0.23 10.9 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3645) DLH PF01738.18 gi|336253983|ref|YP_004597090.1| - 0.21 11.1 2.0 5.2 6.5 0.3 2.2 2 0 0 2 2 2 0 Dienelactone hydrolase family IlvN PF07991.12 gi|336253983|ref|YP_004597090.1| - 0.3 10.6 5.9 6.8 6.2 5.9 2.2 1 1 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain Shikimate_DH PF01488.20 gi|336253983|ref|YP_004597090.1| - 0.34 11.0 4.1 36 4.4 3.7 3.0 2 1 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase HalX PF08663.10 gi|336253984|ref|YP_004597091.1| - 6.6e-24 84.0 4.3 1.6e-23 82.8 4.3 1.7 1 0 0 1 1 1 1 HalX domain Response_reg PF00072.24 gi|336253984|ref|YP_004597091.1| - 2.5e-21 75.9 1.1 3e-21 75.7 0.1 1.6 2 0 0 2 2 2 1 Response regulator receiver domain MtrB PF05440.12 gi|336253984|ref|YP_004597091.1| - 0.072 13.5 0.3 0.26 11.7 0.0 2.0 2 0 0 2 2 2 0 Tetrahydromethanopterin S-methyltransferase subunit B DUF772 PF05598.11 gi|336253984|ref|YP_004597091.1| - 0.14 12.2 0.1 0.39 10.8 0.0 1.8 2 0 0 2 2 2 0 Transposase domain (DUF772) SPW PF03779.14 gi|336253985|ref|YP_004597092.1| - 2.9e-12 45.9 10.3 1.7e-06 27.5 0.2 2.3 2 0 0 2 2 2 2 SPW repeat 7TMR-DISM_7TM PF07695.11 gi|336253985|ref|YP_004597092.1| - 0.0041 17.0 2.4 0.067 13.1 3.1 1.9 1 1 0 1 1 1 1 7TM diverse intracellular signalling Cation_efflux PF01545.21 gi|336253985|ref|YP_004597092.1| - 0.027 14.2 4.5 0.044 13.5 0.2 2.0 1 1 1 2 2 2 0 Cation efflux family OppC_N PF12911.7 gi|336253985|ref|YP_004597092.1| - 3.2 7.8 6.7 1.1 9.3 0.7 2.6 1 1 1 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C Acyl-CoA_dh_1 PF00441.24 gi|336253986|ref|YP_004597093.1| - 4.2e-41 140.7 4.0 8.5e-41 139.7 4.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|336253986|ref|YP_004597093.1| - 1.3e-27 95.8 0.0 3.7e-27 94.3 0.0 1.8 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_N PF02771.16 gi|336253986|ref|YP_004597093.1| - 3.2e-24 85.7 0.4 8.5e-24 84.4 0.4 1.8 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.11 gi|336253986|ref|YP_004597093.1| - 1.1e-16 61.3 6.8 1.9e-16 60.5 6.8 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Mor PF08765.11 gi|336253986|ref|YP_004597093.1| - 0.13 12.3 0.0 7.3 6.6 0.0 2.5 2 0 0 2 2 2 0 Mor transcription activator family HTH_10 PF04967.12 gi|336253987|ref|YP_004597094.1| - 6e-15 54.8 0.0 9.5e-15 54.1 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|336253987|ref|YP_004597094.1| - 2.3e-12 47.1 2.0 3.2e-12 46.6 2.0 1.2 1 0 0 1 1 1 1 GAF and HTH_10 associated domain Sigma70_r4 PF04545.16 gi|336253987|ref|YP_004597094.1| - 5e-06 25.9 0.1 1.1e-05 24.8 0.1 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 MarR_2 PF12802.7 gi|336253987|ref|YP_004597094.1| - 0.00026 20.8 0.0 0.00049 19.9 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_AsnC-type PF13404.6 gi|336253987|ref|YP_004597094.1| - 0.00031 20.5 0.1 0.00058 19.6 0.1 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|336253987|ref|YP_004597094.1| - 0.0019 17.7 0.0 0.0035 16.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Sigma70_r4_2 PF08281.12 gi|336253987|ref|YP_004597094.1| - 0.01 15.5 0.0 0.11 12.2 0.0 2.2 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_50 PF18024.1 gi|336253987|ref|YP_004597094.1| - 0.086 12.5 0.0 0.19 11.4 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_11 PF08279.12 gi|336253987|ref|YP_004597094.1| - 0.12 12.3 0.0 0.26 11.2 0.0 1.6 1 0 0 1 1 1 0 HTH domain UPF0122 PF04297.14 gi|336253987|ref|YP_004597094.1| - 0.21 11.8 0.0 0.36 11.1 0.0 1.3 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like HATPase_c PF02518.26 gi|336253988|ref|YP_004597095.1| - 2.7e-28 98.7 0.0 4.8e-28 97.9 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|336253988|ref|YP_004597095.1| - 7.1e-11 42.0 3.3 4.3e-10 39.5 0.0 3.0 2 1 1 3 3 3 1 His Kinase A (phospho-acceptor) domain TMEM100 PF16311.5 gi|336253988|ref|YP_004597095.1| - 0.0016 18.1 0.5 0.028 14.0 0.1 2.2 2 0 0 2 2 2 1 Transmembrane protein 100 HATPase_c_5 PF14501.6 gi|336253988|ref|YP_004597095.1| - 0.0017 18.3 0.0 0.048 13.6 0.0 2.3 1 1 0 1 1 1 1 GHKL domain HisKA_4TM PF16926.5 gi|336253988|ref|YP_004597095.1| - 0.003 17.1 6.6 0.0069 16.0 6.6 1.6 1 0 0 1 1 1 1 Archaeal 4TM region of histidine kinase ZapB PF06005.12 gi|336253988|ref|YP_004597095.1| - 0.018 15.5 4.0 0.038 14.4 4.0 1.5 1 0 0 1 1 1 0 Cell division protein ZapB adh_short PF00106.25 gi|336253988|ref|YP_004597095.1| - 0.05 13.1 0.1 7.4 6.0 0.1 2.4 2 0 0 2 2 2 0 short chain dehydrogenase KASH_CCD PF14662.6 gi|336253988|ref|YP_004597095.1| - 0.066 13.0 2.7 0.11 12.4 2.7 1.2 1 0 0 1 1 1 0 Coiled-coil region of CCDC155 or KASH Cupin_2 PF07883.11 gi|336253990|ref|YP_004597097.1| - 7.6e-13 48.0 0.2 1e-12 47.5 0.2 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|336253990|ref|YP_004597097.1| - 8e-06 25.8 0.0 1e-05 25.4 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_3 PF05899.12 gi|336253990|ref|YP_004597097.1| - 0.0002 21.0 0.1 0.0003 20.4 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF861) EutQ PF06249.12 gi|336253990|ref|YP_004597097.1| - 0.00046 20.0 0.0 0.00056 19.7 0.0 1.2 1 0 0 1 1 1 1 Ethanolamine utilisation protein EutQ AraC_binding_2 PF14525.6 gi|336253990|ref|YP_004597097.1| - 0.0034 17.1 0.0 0.004 16.9 0.0 1.1 1 0 0 1 1 1 1 AraC-binding-like domain MannoseP_isomer PF01050.18 gi|336253990|ref|YP_004597097.1| - 0.0034 17.3 0.0 0.0041 17.0 0.0 1.2 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase KduI PF04962.12 gi|336253990|ref|YP_004597097.1| - 0.0071 15.7 0.0 0.0089 15.4 0.0 1.2 1 0 0 1 1 1 1 KduI/IolB family CENP-C_C PF11699.8 gi|336253990|ref|YP_004597097.1| - 0.022 15.0 0.0 0.03 14.5 0.0 1.2 1 0 0 1 1 1 0 Mif2/CENP-C like Cupin_1 PF00190.22 gi|336253990|ref|YP_004597097.1| - 0.031 13.9 0.0 0.037 13.6 0.0 1.1 1 0 0 1 1 1 0 Cupin Pirin_C PF05726.13 gi|336253990|ref|YP_004597097.1| - 0.063 13.6 0.0 0.087 13.2 0.0 1.2 1 0 0 1 1 1 0 Pirin C-terminal cupin domain FdtA PF05523.11 gi|336253990|ref|YP_004597097.1| - 0.07 12.9 0.0 0.11 12.3 0.0 1.2 1 0 0 1 1 1 0 WxcM-like, C-terminal CTP_synth_N PF06418.14 gi|336253990|ref|YP_004597097.1| - 0.079 12.3 0.0 0.11 11.9 0.0 1.2 1 0 0 1 1 1 0 CTP synthase N-terminus Cupin_6 PF12852.7 gi|336253990|ref|YP_004597097.1| - 0.091 12.5 0.0 0.15 11.8 0.0 1.3 1 1 0 1 1 1 0 Cupin NikR_C PF08753.11 gi|336253991|ref|YP_004597098.1| - 7.8e-21 74.0 2.2 1.2e-20 73.4 2.2 1.3 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.21 gi|336253991|ref|YP_004597098.1| - 3.1e-07 30.1 0.0 5e-07 29.4 0.0 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_5 PF07878.11 gi|336253991|ref|YP_004597098.1| - 0.0016 18.3 0.0 0.0029 17.5 0.0 1.3 1 0 0 1 1 1 1 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 HicB_lk_antitox PF15919.5 gi|336253991|ref|YP_004597098.1| - 0.022 14.9 0.0 0.041 14.0 0.0 1.5 1 0 0 1 1 1 0 HicB_like antitoxin of bacterial toxin-antitoxin system DUF4276 PF14103.6 gi|336253991|ref|YP_004597098.1| - 0.12 12.6 0.1 0.13 12.5 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4276) Creatininase PF02633.14 gi|336253992|ref|YP_004597099.1| - 1.2e-65 221.4 1.0 1.3e-65 221.2 1.0 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase TM_helix PF05552.12 gi|336253993|ref|YP_004597100.1| - 2.2e-21 75.6 3.8 9.9e-14 51.1 0.2 3.0 3 0 0 3 3 3 2 Conserved TM helix Bacillus_PapR PF05968.11 gi|336253993|ref|YP_004597100.1| - 0.11 12.4 0.3 0.25 11.2 0.3 1.6 1 0 0 1 1 1 0 Bacillus PapR protein PMT_4TMC PF16192.5 gi|336253993|ref|YP_004597100.1| - 3.1 7.3 5.9 0.53 9.8 1.6 1.8 2 1 0 2 2 2 0 C-terminal four TMM region of protein-O-mannosyltransferase DUF1467 PF07330.12 gi|336253995|ref|YP_004597102.1| - 0.065 13.2 0.5 0.14 12.1 0.5 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1467) DUF4131 PF13567.6 gi|336253995|ref|YP_004597102.1| - 7.2 6.2 8.9 48 3.6 4.9 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) PAS_4 PF08448.10 gi|336253996|ref|YP_004597103.1| - 1.5e-36 125.0 19.8 3.9e-14 52.8 0.1 5.0 6 0 0 6 6 5 4 PAS fold PAS PF00989.25 gi|336253996|ref|YP_004597103.1| - 1.7e-27 95.7 0.3 1.8e-07 31.2 0.0 5.3 4 1 0 4 4 4 3 PAS fold HATPase_c PF02518.26 gi|336253996|ref|YP_004597103.1| - 1.1e-26 93.6 0.1 2.2e-26 92.5 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|336253996|ref|YP_004597103.1| - 1.8e-23 82.8 0.0 1.4e-05 25.3 0.0 4.7 4 0 0 4 4 4 4 PAS domain PAS_8 PF13188.7 gi|336253996|ref|YP_004597103.1| - 3.2e-20 71.7 2.6 4.4e-06 26.6 0.0 5.1 4 0 0 4 4 4 3 PAS domain PAS_7 PF12860.7 gi|336253996|ref|YP_004597103.1| - 3e-14 53.2 0.4 7.2e-06 26.2 0.0 5.4 4 1 0 4 4 4 2 PAS fold GAF_2 PF13185.6 gi|336253996|ref|YP_004597103.1| - 3.1e-13 50.2 0.6 1.5e-12 48.0 0.1 2.5 2 0 0 2 2 2 1 GAF domain HisKA PF00512.25 gi|336253996|ref|YP_004597103.1| - 1.9e-11 43.8 0.2 1.9e-11 43.8 0.2 2.8 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain GAF_3 PF13492.6 gi|336253996|ref|YP_004597103.1| - 2.5e-07 31.1 0.0 6.4e-07 29.8 0.0 1.8 2 0 0 2 2 1 1 GAF domain HATPase_c_5 PF14501.6 gi|336253996|ref|YP_004597103.1| - 1.6e-05 24.7 0.0 2.9e-05 23.9 0.0 1.4 1 0 0 1 1 1 1 GHKL domain HATPase_c_2 PF13581.6 gi|336253996|ref|YP_004597103.1| - 0.00019 21.4 0.9 0.00045 20.2 0.1 2.2 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain PAS_3 PF08447.12 gi|336253996|ref|YP_004597103.1| - 0.0019 18.4 0.4 0.28 11.5 0.1 4.2 5 1 0 5 5 4 1 PAS fold PAS_11 PF14598.6 gi|336253996|ref|YP_004597103.1| - 0.0091 16.1 0.0 0.02 15.0 0.0 1.5 1 0 0 1 1 1 1 PAS domain HATPase_c_3 PF13589.6 gi|336253996|ref|YP_004597103.1| - 0.032 14.1 0.0 0.066 13.0 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Holin_BhlA PF10960.8 gi|336253996|ref|YP_004597103.1| - 0.38 10.8 1.4 2.1 8.4 0.2 2.3 2 0 0 2 2 2 0 BhlA holin family DUF4293 PF14126.6 gi|336253997|ref|YP_004597104.1| - 0.0059 16.9 0.7 0.0091 16.3 0.6 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF4293) Methyltransf_3 PF01596.17 gi|336253998|ref|YP_004597105.1| - 2.6e-23 82.3 0.0 3.6e-23 81.9 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_24 PF13578.6 gi|336253998|ref|YP_004597105.1| - 1.7e-13 51.5 0.0 3e-13 50.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|336253998|ref|YP_004597105.1| - 8.7e-06 25.6 0.0 1.3e-05 25.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|336253998|ref|YP_004597105.1| - 0.00022 21.9 0.0 0.00037 21.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|336253998|ref|YP_004597105.1| - 0.00092 18.8 0.0 0.0018 17.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain PCMT PF01135.19 gi|336253998|ref|YP_004597105.1| - 0.011 15.5 0.0 0.016 15.0 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_12 PF08242.12 gi|336253998|ref|YP_004597105.1| - 0.018 15.8 0.0 0.039 14.7 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain DUF938 PF06080.12 gi|336253998|ref|YP_004597105.1| - 0.14 11.9 0.0 0.19 11.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF938) ROK PF00480.20 gi|336254000|ref|YP_004597107.1| - 7.9e-44 150.3 0.0 9.1e-44 150.1 0.0 1.0 1 0 0 1 1 1 1 ROK family BcrAD_BadFG PF01869.20 gi|336254000|ref|YP_004597107.1| - 0.00044 19.8 0.5 0.0055 16.2 0.1 2.1 2 0 0 2 2 2 1 BadF/BadG/BcrA/BcrD ATPase family FGGY_N PF00370.21 gi|336254000|ref|YP_004597107.1| - 0.029 14.0 0.1 0.1 12.2 0.1 1.8 1 1 0 1 1 1 0 FGGY family of carbohydrate kinases, N-terminal domain LVIVD PF08309.11 gi|336254001|ref|YP_004597108.1| - 7.4e-18 63.6 0.4 0.00054 19.2 0.0 6.3 6 0 0 6 6 6 5 LVIVD repeat Beta_propel PF09826.9 gi|336254001|ref|YP_004597108.1| - 2.3e-08 33.4 0.0 0.0019 17.2 0.0 3.9 4 0 0 4 4 4 2 Beta propeller domain SBP56 PF05694.11 gi|336254001|ref|YP_004597108.1| - 0.007 15.2 0.2 4.9 5.9 0.0 3.8 3 1 0 4 4 4 1 56kDa selenium binding protein (SBP56) Putative_PNPOx PF01243.20 gi|336254002|ref|YP_004597109.1| - 3.4e-18 65.6 0.0 4.4e-18 65.2 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_ox_2 PF12900.7 gi|336254002|ref|YP_004597109.1| - 1.1e-10 41.6 0.2 1.4e-10 41.3 0.2 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyrid_ox_like PF16242.5 gi|336254002|ref|YP_004597109.1| - 8.7e-06 25.4 0.0 1e-05 25.2 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase like UspB PF10625.9 gi|336254002|ref|YP_004597109.1| - 0.058 13.4 0.0 0.084 12.8 0.0 1.2 1 0 0 1 1 1 0 Universal stress protein B (UspB) tRNA-synt_1 PF00133.22 gi|336254003|ref|YP_004597110.1| - 8.9e-60 202.6 0.0 1.2e-40 139.4 0.9 4.6 1 1 1 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1_2 PF13603.6 gi|336254003|ref|YP_004597110.1| - 4.3e-58 195.9 0.0 7.2e-58 195.1 0.0 1.4 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1g PF09334.11 gi|336254003|ref|YP_004597110.1| - 4.2e-30 104.8 0.0 1.6e-21 76.5 0.0 4.5 3 1 0 3 3 3 3 tRNA synthetases class I (M) Anticodon_1 PF08264.13 gi|336254003|ref|YP_004597110.1| - 1.9e-17 63.6 0.0 3.3e-17 62.8 0.0 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1f PF01921.18 gi|336254003|ref|YP_004597110.1| - 0.00058 18.9 0.0 0.5 9.2 0.0 3.2 3 0 0 3 3 3 1 tRNA synthetases class I (K) tRNA-synt_1e PF01406.19 gi|336254003|ref|YP_004597110.1| - 0.0023 17.3 0.0 1.2 8.4 0.1 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain PknG_rubred PF16919.5 gi|336254003|ref|YP_004597110.1| - 0.0032 17.6 0.7 0.0067 16.6 0.0 1.9 2 0 0 2 2 2 1 Protein kinase G rubredoxin domain DZR PF12773.7 gi|336254003|ref|YP_004597110.1| - 0.013 15.5 3.3 2.5 8.2 0.5 2.5 2 0 0 2 2 2 0 Double zinc ribbon TF_Zn_Ribbon PF08271.12 gi|336254003|ref|YP_004597110.1| - 0.016 14.7 10.2 0.83 9.2 0.6 4.1 3 0 0 3 3 3 0 TFIIB zinc-binding Zn-ribbon_8 PF09723.10 gi|336254003|ref|YP_004597110.1| - 0.062 13.4 6.9 0.17 12.0 0.3 3.2 3 0 0 3 3 3 0 Zinc ribbon domain DNA_ligase_ZBD PF03119.16 gi|336254003|ref|YP_004597110.1| - 0.42 10.7 6.5 0.45 10.6 0.1 3.2 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-ribbon_3 PF13248.6 gi|336254003|ref|YP_004597110.1| - 1.5 8.4 7.3 12 5.4 0.2 3.9 4 0 0 4 4 4 0 zinc-ribbon domain Auto_anti-p27 PF06677.12 gi|336254003|ref|YP_004597110.1| - 1.8 8.8 8.2 4.2 7.6 0.3 3.2 3 0 0 3 3 3 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) HalOD1 PF18545.1 gi|336254004|ref|YP_004597111.1| - 5.6e-26 90.6 0.1 7e-26 90.3 0.1 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 HTH_31 PF13560.6 gi|336254004|ref|YP_004597111.1| - 0.099 13.0 0.1 0.19 12.1 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Mago-bind PF09282.10 gi|336254004|ref|YP_004597111.1| - 1.6 8.7 5.5 13 5.8 0.1 3.0 3 0 0 3 3 3 0 Mago binding DUF420 PF04238.12 gi|336254005|ref|YP_004597112.1| - 9.1e-38 129.5 12.0 9.1e-38 129.5 12.0 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF420) Cytochrom_B561 PF03188.16 gi|336254005|ref|YP_004597112.1| - 0.004 17.3 1.1 0.004 17.3 1.1 2.2 2 1 0 2 2 2 1 Eukaryotic cytochrome b561 TM140 PF14985.6 gi|336254005|ref|YP_004597112.1| - 0.0079 15.8 1.3 0.0079 15.8 1.3 2.2 2 1 0 2 2 2 1 TM140 protein family DUF2306 PF10067.9 gi|336254005|ref|YP_004597112.1| - 0.012 15.8 14.0 0.022 15.0 2.2 2.3 2 1 0 2 2 2 0 Predicted membrane protein (DUF2306) DUF3413 PF11893.8 gi|336254005|ref|YP_004597112.1| - 0.12 11.6 8.9 0.55 9.4 1.2 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF3413) DUF1240 PF06836.12 gi|336254005|ref|YP_004597112.1| - 1.5 9.4 5.2 0.23 12.0 0.5 2.0 2 1 0 2 2 2 0 Protein of unknown function (DUF1240) Pyridox_ox_2 PF12900.7 gi|336254006|ref|YP_004597113.1| - 0.00053 20.0 0.1 0.00074 19.5 0.1 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Putative_PNPOx PF01243.20 gi|336254006|ref|YP_004597113.1| - 0.00055 20.1 0.0 0.0009 19.4 0.0 1.3 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase PB1 PF00564.24 gi|336254006|ref|YP_004597113.1| - 0.082 12.8 0.0 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 PB1 domain ABC2_membrane PF01061.24 gi|336254007|ref|YP_004597114.1| - 9.1e-28 97.1 7.1 9.1e-28 97.1 7.1 1.3 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|336254007|ref|YP_004597114.1| - 3.1e-15 56.1 2.6 3.1e-15 56.1 2.6 2.0 1 1 1 2 2 2 2 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|336254007|ref|YP_004597114.1| - 4.2e-07 29.5 10.3 4.2e-07 29.5 10.3 2.0 1 1 1 2 2 2 1 ABC-2 family transporter protein 12TM_1 PF09847.9 gi|336254007|ref|YP_004597114.1| - 0.0011 18.2 1.1 0.0016 17.6 1.1 1.2 1 0 0 1 1 1 1 Membrane protein of 12 TMs OppC_N PF12911.7 gi|336254007|ref|YP_004597114.1| - 0.024 14.6 0.2 0.024 14.6 0.2 3.4 3 1 0 3 3 3 0 N-terminal TM domain of oligopeptide transport permease C ABC_tran PF00005.27 gi|336254008|ref|YP_004597115.1| - 9e-29 100.7 0.0 1.5e-28 100.0 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|336254008|ref|YP_004597115.1| - 1e-16 61.6 0.0 1.2e-09 38.4 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|336254008|ref|YP_004597115.1| - 0.00016 22.2 0.1 0.00024 21.7 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|336254008|ref|YP_004597115.1| - 0.00016 21.4 0.6 0.0029 17.4 0.1 2.2 1 1 1 2 2 2 1 AAA domain AAA_15 PF13175.6 gi|336254008|ref|YP_004597115.1| - 0.00018 21.3 0.0 0.11 12.2 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_28 PF13521.6 gi|336254008|ref|YP_004597115.1| - 0.00022 21.5 0.0 0.00057 20.2 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|336254008|ref|YP_004597115.1| - 0.00029 20.5 0.1 0.00051 19.7 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain IstB_IS21 PF01695.17 gi|336254008|ref|YP_004597115.1| - 0.0066 16.2 0.0 0.13 11.9 0.0 2.1 2 0 0 2 2 2 1 IstB-like ATP binding protein TsaE PF02367.17 gi|336254008|ref|YP_004597115.1| - 0.0077 16.2 0.3 0.017 15.1 0.1 1.6 2 0 0 2 2 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_22 PF13401.6 gi|336254008|ref|YP_004597115.1| - 0.0096 16.2 0.0 0.017 15.4 0.0 1.5 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|336254008|ref|YP_004597115.1| - 0.013 15.4 0.0 0.024 14.6 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_18 PF13238.6 gi|336254008|ref|YP_004597115.1| - 0.019 15.5 0.1 1.5 9.4 0.0 2.9 3 0 0 3 3 3 0 AAA domain AAA_16 PF13191.6 gi|336254008|ref|YP_004597115.1| - 0.02 15.3 0.3 0.037 14.4 0.1 1.8 1 1 0 1 1 1 0 AAA ATPase domain AAA_33 PF13671.6 gi|336254008|ref|YP_004597115.1| - 0.021 15.0 1.0 0.057 13.6 0.2 2.3 2 1 0 2 2 1 0 AAA domain cobW PF02492.19 gi|336254008|ref|YP_004597115.1| - 0.021 14.4 0.0 0.061 12.9 0.0 1.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain SMC_N PF02463.19 gi|336254008|ref|YP_004597115.1| - 0.022 14.2 0.0 0.2 11.0 0.0 2.0 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain MMR_HSR1 PF01926.23 gi|336254008|ref|YP_004597115.1| - 0.029 14.5 0.0 0.085 12.9 0.0 1.8 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_5 PF07728.14 gi|336254008|ref|YP_004597115.1| - 0.029 14.4 0.1 1.1 9.2 0.0 2.5 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_24 PF13479.6 gi|336254008|ref|YP_004597115.1| - 0.033 13.9 0.0 0.18 11.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|336254008|ref|YP_004597115.1| - 0.037 14.5 0.0 0.095 13.1 0.0 1.7 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.6 gi|336254008|ref|YP_004597115.1| - 0.057 13.0 0.3 0.23 11.0 0.1 2.0 2 0 0 2 2 2 0 AAA domain ABC_ATPase PF09818.9 gi|336254008|ref|YP_004597115.1| - 0.1 11.4 0.1 0.15 10.8 0.1 1.2 1 0 0 1 1 1 0 Predicted ATPase of the ABC class AAA_27 PF13514.6 gi|336254008|ref|YP_004597115.1| - 0.12 11.9 0.1 0.25 10.9 0.1 1.4 1 0 0 1 1 1 0 AAA domain DUF2228 PF10228.9 gi|336254008|ref|YP_004597115.1| - 0.25 11.0 0.0 0.35 10.6 0.0 1.1 1 0 0 1 1 1 0 Uncharacterised conserved protein (DUF2228) Acetyltransf_9 PF13527.7 gi|336254009|ref|YP_004597116.1| - 5e-19 68.7 0.0 4.7e-18 65.5 0.0 2.1 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|336254009|ref|YP_004597116.1| - 0.00046 20.4 0.0 0.0085 16.3 0.0 2.3 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family Acetyltransf_6 PF13480.7 gi|336254009|ref|YP_004597116.1| - 0.0006 20.0 2.1 0.018 15.2 0.4 2.7 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|336254009|ref|YP_004597116.1| - 0.073 13.5 0.0 0.22 11.9 0.0 1.8 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|336254009|ref|YP_004597116.1| - 0.1 12.5 0.0 1.1 9.2 0.0 2.2 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|336254009|ref|YP_004597116.1| - 0.1 12.6 0.1 0.78 9.8 0.0 2.4 3 0 0 3 3 3 0 FR47-like protein Bac_luciferase PF00296.20 gi|336254010|ref|YP_004597117.1| - 7.9e-52 176.6 4.3 2.1e-51 175.3 4.3 1.5 1 1 0 1 1 1 1 Luciferase-like monooxygenase DUF4142 PF13628.6 gi|336254010|ref|YP_004597117.1| - 0.0029 17.8 0.2 0.0047 17.2 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4142) DpnD-PcfM PF14207.6 gi|336254010|ref|YP_004597117.1| - 0.24 11.3 0.3 0.24 11.3 0.3 2.0 2 0 0 2 2 2 0 DpnD/PcfM-like protein Complex1_51K PF01512.17 gi|336254011|ref|YP_004597118.1| - 6.1e-18 65.1 0.0 1e-17 64.4 0.0 1.4 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase 51 Kd subunit RnfC_N PF13375.6 gi|336254011|ref|YP_004597118.1| - 7e-07 29.1 0.0 1.2e-06 28.4 0.0 1.4 1 0 0 1 1 1 1 RnfC Barrel sandwich hybrid domain SLBB PF10531.9 gi|336254011|ref|YP_004597118.1| - 0.00019 21.2 0.0 0.00046 20.0 0.0 1.7 1 0 0 1 1 1 1 SLBB domain HTH_10 PF04967.12 gi|336254012|ref|YP_004597119.1| - 2.6e-11 43.1 0.0 4e-11 42.5 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4_2 PF08281.12 gi|336254012|ref|YP_004597119.1| - 0.19 11.5 0.0 0.36 10.5 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 Raffinose_syn PF05691.12 gi|336254012|ref|YP_004597119.1| - 0.27 9.0 0.0 0.49 8.1 0.0 1.4 2 0 0 2 2 2 0 Raffinose synthase or seed imbibition protein Sip1 HTH_31 PF13560.6 gi|336254012|ref|YP_004597119.1| - 0.27 11.6 3.2 9.4 6.7 0.3 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain Aldo_ket_red PF00248.21 gi|336254013|ref|YP_004597120.1| - 3.8e-56 190.5 0.0 4.6e-56 190.2 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family HBS1_N PF08938.10 gi|336254013|ref|YP_004597120.1| - 0.02 15.2 0.2 0.32 11.3 0.0 2.5 2 0 0 2 2 2 0 HBS1 N-terminus DUF418 PF04235.12 gi|336254014|ref|YP_004597121.1| - 1.9e-48 164.5 12.3 1.9e-48 164.5 12.3 1.9 2 1 0 2 2 2 1 Protein of unknown function (DUF418) Pterin_bind PF00809.22 gi|336254015|ref|YP_004597122.1| - 3.1e-79 266.1 1.3 4.5e-79 265.6 1.3 1.2 1 0 0 1 1 1 1 Pterin binding enzyme Mur_ligase_M PF08245.12 gi|336254015|ref|YP_004597122.1| - 7.4e-12 45.7 0.0 1.2e-11 45.0 0.0 1.4 1 0 0 1 1 1 1 Mur ligase middle domain Mur_ligase_C PF02875.21 gi|336254015|ref|YP_004597122.1| - 2.5e-09 37.3 0.0 9.9e-09 35.3 0.0 2.0 2 0 0 2 2 2 1 Mur ligase family, glutamate ligase domain PEP_mutase PF13714.6 gi|336254015|ref|YP_004597122.1| - 0.00076 19.0 5.1 0.043 13.3 0.2 4.1 3 2 0 4 4 4 2 Phosphoenolpyruvate phosphomutase CAT_RBD PF03123.15 gi|336254015|ref|YP_004597122.1| - 0.08 12.9 0.0 0.15 12.0 0.0 1.4 1 0 0 1 1 1 0 CAT RNA binding domain DFP PF04127.15 gi|336254015|ref|YP_004597122.1| - 0.72 9.6 3.1 15 5.3 0.0 2.9 3 0 0 3 3 3 0 DNA / pantothenate metabolism flavoprotein Cupin_2 PF07883.11 gi|336254016|ref|YP_004597123.1| - 9.1e-10 38.1 0.7 1.4e-09 37.5 0.7 1.2 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|336254016|ref|YP_004597123.1| - 0.0011 18.8 0.0 0.0014 18.5 0.0 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_3 PF05899.12 gi|336254016|ref|YP_004597123.1| - 0.0061 16.2 0.1 0.0087 15.7 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF861) Pirin_C PF05726.13 gi|336254016|ref|YP_004597123.1| - 0.16 12.3 0.0 0.24 11.8 0.0 1.2 1 0 0 1 1 1 0 Pirin C-terminal cupin domain Phage_holin_3_3 PF16083.5 gi|336254017|ref|YP_004597124.1| - 0.096 12.8 10.6 1.9 8.7 3.7 2.8 2 1 0 2 2 2 0 LydA holin phage, holin superfamily III ABC_tran PF00005.27 gi|336254018|ref|YP_004597125.1| - 3.4e-28 98.9 0.0 4.5e-28 98.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|336254018|ref|YP_004597125.1| - 2.3e-12 47.4 0.0 2.9e-08 33.9 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|336254018|ref|YP_004597125.1| - 0.0019 18.0 0.0 2.3 7.9 0.0 2.2 1 1 0 2 2 2 2 AAA ATPase domain AAA_16 PF13191.6 gi|336254018|ref|YP_004597125.1| - 0.0089 16.4 0.1 0.016 15.6 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|336254018|ref|YP_004597125.1| - 0.018 15.6 2.0 0.02 15.4 0.3 1.7 1 1 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|336254018|ref|YP_004597125.1| - 0.021 14.5 0.7 0.041 13.6 0.7 1.4 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|336254018|ref|YP_004597125.1| - 0.088 12.6 0.4 0.15 11.8 0.4 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|336254018|ref|YP_004597125.1| - 0.088 13.1 0.8 0.43 10.9 0.8 2.1 1 1 0 1 1 1 0 AAA domain AAA_27 PF13514.6 gi|336254018|ref|YP_004597125.1| - 0.094 12.3 0.0 0.17 11.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|336254018|ref|YP_004597125.1| - 0.13 12.7 0.0 0.35 11.3 0.0 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.12 gi|336254018|ref|YP_004597125.1| - 0.16 11.2 0.2 3.7 6.8 0.1 2.1 1 1 0 2 2 2 0 Zeta toxin AAA_13 PF13166.6 gi|336254018|ref|YP_004597125.1| - 0.25 10.0 0.0 0.63 8.6 0.0 1.6 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.22 gi|336254018|ref|YP_004597125.1| - 0.35 10.5 1.4 0.57 9.8 1.4 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Aldo_ket_red PF00248.21 gi|336254020|ref|YP_004597127.1| - 2e-74 250.5 0.0 2.3e-74 250.2 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family Terminase_1 PF03354.15 gi|336254020|ref|YP_004597127.1| - 0.014 13.9 0.0 0.021 13.4 0.0 1.1 1 0 0 1 1 1 0 Phage Terminase UbiA PF01040.18 gi|336254023|ref|YP_004597130.1| - 1.6e-56 191.5 26.8 1.6e-56 191.5 26.8 3.0 2 1 0 2 2 2 1 UbiA prenyltransferase family COX15-CtaA PF02628.15 gi|336254023|ref|YP_004597130.1| - 3.8e-08 32.8 14.5 4.8e-06 25.9 7.8 3.6 3 1 1 4 4 4 2 Cytochrome oxidase assembly protein Hexapep_2 PF14602.6 gi|336254023|ref|YP_004597130.1| - 0.05 13.4 1.3 0.23 11.3 0.4 2.4 2 0 0 2 2 2 0 Hexapeptide repeat of succinyl-transferase DUF3267 PF11667.8 gi|336254025|ref|YP_004597132.1| - 2.3e-25 89.0 1.7 2.3e-25 89.0 1.7 2.5 2 0 0 2 2 2 1 Putative zincin peptidase PadR PF03551.14 gi|336254026|ref|YP_004597133.1| - 2.8e-07 30.4 0.0 4.1e-07 29.9 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family DUF1495 PF07381.11 gi|336254026|ref|YP_004597133.1| - 0.0015 18.4 0.0 0.0027 17.5 0.0 1.6 1 1 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) DUF4364 PF14277.6 gi|336254026|ref|YP_004597133.1| - 0.0085 15.8 0.0 0.021 14.6 0.0 1.5 1 1 1 2 2 2 1 Domain of unknown function (DUF4364) HTH_20 PF12840.7 gi|336254026|ref|YP_004597133.1| - 0.017 15.2 0.0 0.026 14.6 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Mrr_N PF14338.6 gi|336254026|ref|YP_004597133.1| - 0.019 15.1 0.1 0.95 9.6 0.0 2.2 1 1 1 2 2 2 0 Mrr N-terminal domain TrmB PF01978.19 gi|336254026|ref|YP_004597133.1| - 0.05 13.5 0.0 0.066 13.1 0.0 1.4 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HicA_toxin PF07927.12 gi|336254026|ref|YP_004597133.1| - 0.067 13.2 0.0 0.17 11.9 0.0 1.6 2 0 0 2 2 2 0 HicA toxin of bacterial toxin-antitoxin, HTH_34 PF13601.6 gi|336254026|ref|YP_004597133.1| - 0.15 12.2 0.0 0.3 11.3 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain Acyl-CoA_dh_1 PF00441.24 gi|336254027|ref|YP_004597134.1| - 3e-48 163.8 0.7 4.3e-48 163.3 0.7 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|336254027|ref|YP_004597134.1| - 2.6e-38 131.2 0.1 6.3e-38 129.9 0.0 1.7 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.11 gi|336254027|ref|YP_004597134.1| - 1.3e-25 90.2 0.3 2e-25 89.6 0.3 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|336254027|ref|YP_004597134.1| - 1.3e-24 86.2 0.0 2.7e-24 85.2 0.0 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain AMP-binding PF00501.28 gi|336254028|ref|YP_004597135.1| - 3.6e-90 302.6 0.0 4.3e-90 302.3 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|336254028|ref|YP_004597135.1| - 1.6e-23 83.4 0.1 3.1e-23 82.5 0.1 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain NAD_binding_10 PF13460.6 gi|336254029|ref|YP_004597136.1| - 2.8e-47 161.0 0.1 3.4e-47 160.7 0.1 1.1 1 0 0 1 1 1 1 NAD(P)H-binding NmrA PF05368.13 gi|336254029|ref|YP_004597136.1| - 1.6e-16 60.6 0.0 2.2e-16 60.1 0.0 1.1 1 0 0 1 1 1 1 NmrA-like family Epimerase PF01370.21 gi|336254029|ref|YP_004597136.1| - 4e-10 39.6 0.0 7.2e-10 38.7 0.0 1.4 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|336254029|ref|YP_004597136.1| - 7.5e-07 28.4 0.0 1e-06 28.0 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family TrkA_N PF02254.18 gi|336254029|ref|YP_004597136.1| - 0.00023 21.4 0.1 0.0059 16.9 0.0 2.5 2 1 0 2 2 2 1 TrkA-N domain KR PF08659.10 gi|336254029|ref|YP_004597136.1| - 0.007 16.3 0.0 1.3 8.9 0.0 2.5 1 1 1 2 2 2 2 KR domain Polysacc_synt_2 PF02719.15 gi|336254029|ref|YP_004597136.1| - 0.044 12.9 0.0 0.25 10.5 0.0 2.1 1 1 0 1 1 1 0 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 gi|336254029|ref|YP_004597136.1| - 0.14 11.2 0.1 0.23 10.5 0.1 1.2 1 0 0 1 1 1 0 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|336254029|ref|YP_004597136.1| - 0.16 11.1 0.0 0.22 10.7 0.0 1.2 1 0 0 1 1 1 0 Male sterility protein SQS_PSY PF00494.19 gi|336254030|ref|YP_004597137.1| - 6.3e-54 183.2 2.1 7.7e-54 182.9 2.1 1.1 1 0 0 1 1 1 1 Squalene/phytoene synthase UPF0149 PF03695.13 gi|336254030|ref|YP_004597137.1| - 0.0096 16.2 0.7 0.071 13.4 0.0 2.4 1 1 1 2 2 2 1 Uncharacterised protein family (UPF0149) Myco_19_kDa PF05481.12 gi|336254031|ref|YP_004597138.1| - 0.076 13.3 0.6 0.45 10.8 0.1 2.1 2 0 0 2 2 2 0 Mycobacterium 19 kDa lipoprotein antigen Aminotran_1_2 PF00155.21 gi|336254032|ref|YP_004597139.1| - 6.3e-68 229.6 0.0 7.2e-68 229.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|336254032|ref|YP_004597139.1| - 2.2e-12 46.6 0.0 7.1e-11 41.7 0.0 2.1 2 0 0 2 2 2 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|336254032|ref|YP_004597139.1| - 1.5e-08 34.4 0.4 2.5e-08 33.6 0.4 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|336254032|ref|YP_004597139.1| - 3.4e-05 22.5 0.0 6.5e-05 21.6 0.0 1.5 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme CPT PF07931.12 gi|336254032|ref|YP_004597139.1| - 0.0025 17.7 0.2 0.29 10.9 0.1 2.5 1 1 1 2 2 2 1 Chloramphenicol phosphotransferase-like protein Beta_elim_lyase PF01212.21 gi|336254032|ref|YP_004597139.1| - 0.0045 16.3 0.0 0.0079 15.5 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_MocR PF12897.7 gi|336254032|ref|YP_004597139.1| - 0.019 13.8 0.0 0.047 12.5 0.0 1.7 1 1 0 1 1 1 0 Alanine-glyoxylate amino-transferase 3HCDH_N PF02737.18 gi|336254033|ref|YP_004597140.1| - 7.6e-60 201.9 0.0 9.3e-60 201.6 0.0 1.1 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.22 gi|336254033|ref|YP_004597140.1| - 3.5e-32 110.9 0.0 1.1e-31 109.3 0.0 1.8 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_binding_2 PF03446.15 gi|336254033|ref|YP_004597140.1| - 0.00037 20.7 0.3 0.00081 19.6 0.2 1.7 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.23 gi|336254033|ref|YP_004597140.1| - 0.00099 19.1 0.0 0.0015 18.5 0.0 1.3 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus F420_oxidored PF03807.17 gi|336254033|ref|YP_004597140.1| - 0.0057 17.2 1.8 0.032 14.8 0.7 2.5 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 gi|336254033|ref|YP_004597140.1| - 0.091 12.1 0.1 0.16 11.3 0.1 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|336254033|ref|YP_004597140.1| - 0.11 12.1 0.2 0.55 9.8 0.1 2.0 1 1 1 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Lipase_GDSL_3 PF14606.6 gi|336254034|ref|YP_004597141.1| - 8.7e-25 87.9 0.0 1.1e-24 87.5 0.0 1.1 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family Lipase_GDSL_2 PF13472.6 gi|336254034|ref|YP_004597141.1| - 4.1e-08 33.8 0.1 6e-08 33.3 0.1 1.2 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family GxDLY PF14607.6 gi|336254034|ref|YP_004597141.1| - 0.075 12.8 0.0 0.12 12.2 0.0 1.2 1 0 0 1 1 1 0 N-terminus of Esterase_SGNH_hydro-type HHH_5 PF14520.6 gi|336254035|ref|YP_004597142.1| - 0.028 15.0 0.1 0.1 13.2 0.1 1.9 1 0 0 1 1 1 0 Helix-hairpin-helix domain DUF4332 PF14229.6 gi|336254035|ref|YP_004597142.1| - 0.04 14.1 0.0 0.071 13.3 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4332) DNA_pol_lambd_f PF10391.9 gi|336254035|ref|YP_004597142.1| - 0.096 12.5 0.0 0.22 11.4 0.0 1.6 1 0 0 1 1 1 0 Fingers domain of DNA polymerase lambda DUF3306 PF11748.8 gi|336254035|ref|YP_004597142.1| - 0.47 11.3 4.0 0.16 12.8 0.9 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3306) DeoC PF01791.9 gi|336254036|ref|YP_004597143.1| - 1e-41 143.1 0.0 1.2e-41 142.9 0.0 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase FBPase PF00316.20 gi|336254037|ref|YP_004597144.1| - 5.3e-28 97.8 0.1 8e-28 97.2 0.1 1.2 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase, N-terminal domain Inositol_P PF00459.25 gi|336254037|ref|YP_004597144.1| - 0.0054 16.3 0.0 0.0075 15.8 0.0 1.2 1 0 0 1 1 1 1 Inositol monophosphatase family Carboxyl_trans PF01039.22 gi|336254040|ref|YP_004597147.1| - 5.3e-130 434.4 0.0 6.5e-130 434.1 0.0 1.0 1 0 0 1 1 1 1 Carboxyl transferase domain Acetyltransf_3 PF13302.7 gi|336254042|ref|YP_004597149.1| - 1e-17 65.1 0.1 1.3e-17 64.8 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|336254042|ref|YP_004597149.1| - 0.00013 22.2 0.1 0.00018 21.7 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family bPH_2 PF03703.14 gi|336254043|ref|YP_004597150.1| - 2.7e-13 49.9 0.1 4.1e-13 49.3 0.1 1.2 1 0 0 1 1 1 1 Bacterial PH domain bPH_2 PF03703.14 gi|336254044|ref|YP_004597151.1| - 1.2e-16 60.6 0.0 2.1e-16 59.8 0.0 1.4 1 0 0 1 1 1 1 Bacterial PH domain MaoC_dehydratas PF01575.19 gi|336254045|ref|YP_004597152.1| - 1.6e-25 89.0 0.1 2.2e-25 88.6 0.1 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 gi|336254045|ref|YP_004597152.1| - 2.9e-05 24.2 0.2 0.00014 22.0 0.2 1.8 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase Sm_multidrug_ex PF06695.11 gi|336254046|ref|YP_004597153.1| - 5.8e-10 39.8 1.6 9.6e-10 39.1 0.9 1.7 1 1 1 2 2 2 1 Putative small multi-drug export protein Aldedh PF00171.22 gi|336254047|ref|YP_004597154.1| - 1.1e-141 472.5 0.0 1.2e-141 472.4 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.14 gi|336254047|ref|YP_004597154.1| - 0.018 14.1 0.0 0.029 13.4 0.0 1.2 1 0 0 1 1 1 0 Acyl-CoA reductase (LuxC) ELFV_dehydrog PF00208.21 gi|336254048|ref|YP_004597155.1| - 2.6e-70 236.9 0.0 3.7e-70 236.4 0.0 1.2 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 gi|336254048|ref|YP_004597155.1| - 1.2e-54 183.6 0.0 2.2e-54 182.8 0.0 1.4 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.19 gi|336254048|ref|YP_004597155.1| - 0.0079 15.6 0.0 0.014 14.8 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Bac_GDH PF05088.12 gi|336254048|ref|YP_004597155.1| - 0.014 12.9 0.0 0.027 12.0 0.0 1.3 1 0 0 1 1 1 0 Bacterial NAD-glutamate dehydrogenase Cdc6_C PF09079.11 gi|336254049|ref|YP_004597156.1| - 1.1e-15 57.3 0.1 2.9e-15 56.0 0.1 1.7 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|336254049|ref|YP_004597156.1| - 1.1e-12 48.4 0.0 2.6e-12 47.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|336254049|ref|YP_004597156.1| - 2e-11 44.6 0.2 6.3e-11 43.0 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain NACHT PF05729.12 gi|336254049|ref|YP_004597156.1| - 2.9e-07 30.6 0.0 4.7e-07 29.9 0.0 1.3 1 0 0 1 1 1 1 NACHT domain AAA PF00004.29 gi|336254049|ref|YP_004597156.1| - 4.4e-07 30.4 0.0 1.2e-06 28.9 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TniB PF05621.11 gi|336254049|ref|YP_004597156.1| - 2.4e-06 27.1 0.0 4.4e-06 26.2 0.0 1.4 1 0 0 1 1 1 1 Bacterial TniB protein AAA_5 PF07728.14 gi|336254049|ref|YP_004597156.1| - 5.6e-06 26.4 0.0 1.5e-05 25.0 0.0 1.8 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) DUF815 PF05673.13 gi|336254049|ref|YP_004597156.1| - 4e-05 22.9 0.0 0.00011 21.5 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF815) Sigma54_activat PF00158.26 gi|336254049|ref|YP_004597156.1| - 0.00013 21.7 0.0 0.00029 20.6 0.0 1.6 1 0 0 1 1 1 1 Sigma-54 interaction domain ATPase_2 PF01637.18 gi|336254049|ref|YP_004597156.1| - 0.0014 18.6 0.0 0.0036 17.3 0.0 1.8 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_32 PF13654.6 gi|336254049|ref|YP_004597156.1| - 0.0022 16.9 1.0 0.15 10.8 0.7 2.1 2 0 0 2 2 2 1 AAA domain AAA_2 PF07724.14 gi|336254049|ref|YP_004597156.1| - 0.0027 17.9 0.0 0.0053 16.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) DUF2791 PF10923.8 gi|336254049|ref|YP_004597156.1| - 0.0058 15.5 0.0 0.014 14.2 0.0 1.6 1 1 1 2 2 2 1 P-loop Domain of unknown function (DUF2791) NB-ARC PF00931.22 gi|336254049|ref|YP_004597156.1| - 0.0069 15.6 0.0 0.011 14.9 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain PhoH PF02562.16 gi|336254049|ref|YP_004597156.1| - 0.012 15.1 0.1 0.92 8.9 0.0 2.3 2 0 0 2 2 2 0 PhoH-like protein AAA_7 PF12775.7 gi|336254049|ref|YP_004597156.1| - 0.04 13.4 0.0 0.072 12.6 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region DUF2075 PF09848.9 gi|336254049|ref|YP_004597156.1| - 0.052 12.8 0.0 0.072 12.3 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) RNA_helicase PF00910.22 gi|336254049|ref|YP_004597156.1| - 0.081 13.3 0.0 0.26 11.7 0.0 2.0 2 0 0 2 2 2 0 RNA helicase ABC_tran PF00005.27 gi|336254049|ref|YP_004597156.1| - 0.1 13.1 0.1 0.37 11.3 0.1 2.1 1 1 0 1 1 1 0 ABC transporter AAA_33 PF13671.6 gi|336254049|ref|YP_004597156.1| - 1.5 9.0 3.5 20 5.3 0.1 2.9 2 1 1 3 3 3 0 AAA domain HpcH_HpaI PF03328.14 gi|336254050|ref|YP_004597157.1| - 1.1e-52 178.3 5.4 2.4e-52 177.3 5.4 1.5 1 1 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family C-C_Bond_Lyase PF15617.6 gi|336254050|ref|YP_004597157.1| - 1.5e-10 40.8 0.0 5.4e-05 22.5 0.0 2.3 1 1 0 2 2 2 2 C-C_Bond_Lyase of the TIM-Barrel fold ELFV_dehydrog PF00208.21 gi|336254051|ref|YP_004597158.1| - 3.5e-74 249.6 0.4 5e-74 249.1 0.4 1.2 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 gi|336254051|ref|YP_004597158.1| - 3.8e-53 178.8 0.0 6.4e-53 178.1 0.0 1.4 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain Oxidored_nitro PF00148.19 gi|336254051|ref|YP_004597158.1| - 0.0022 16.8 0.1 0.0034 16.2 0.1 1.2 1 0 0 1 1 1 1 Nitrogenase component 1 type Oxidoreductase 2-Hacid_dh_C PF02826.19 gi|336254051|ref|YP_004597158.1| - 0.0027 17.1 0.1 0.008 15.6 0.1 1.8 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HCV_NS5a_C PF12941.7 gi|336254051|ref|YP_004597158.1| - 0.016 15.1 0.3 4.7 7.0 0.0 2.2 2 0 0 2 2 2 0 HCV NS5a protein C-terminal region ABC_membrane PF00664.23 gi|336254052|ref|YP_004597159.1| - 3.9e-40 138.2 0.8 4.8e-40 137.9 0.8 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 gi|336254052|ref|YP_004597159.1| - 1.4e-28 100.1 0.0 2.5e-28 99.3 0.0 1.4 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|336254052|ref|YP_004597159.1| - 3.5e-05 23.3 0.0 0.0002 20.9 0.0 1.9 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|336254052|ref|YP_004597159.1| - 0.013 15.2 0.2 0.028 14.2 0.2 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF3584 PF12128.8 gi|336254052|ref|YP_004597159.1| - 0.015 12.9 0.0 0.023 12.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) RsgA_GTPase PF03193.16 gi|336254052|ref|YP_004597159.1| - 0.043 13.7 0.0 0.13 12.2 0.0 1.7 2 0 0 2 2 2 0 RsgA GTPase AAA_18 PF13238.6 gi|336254052|ref|YP_004597159.1| - 0.052 14.1 0.0 0.14 12.7 0.0 1.8 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|336254052|ref|YP_004597159.1| - 0.11 12.8 1.6 0.71 10.2 1.6 2.2 1 1 0 1 1 1 0 AAA ATPase domain DUF2062 PF09835.9 gi|336254053|ref|YP_004597160.1| - 5.4e-21 75.0 2.4 6.1e-21 74.8 2.4 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2062) RIC3 PF15361.6 gi|336254053|ref|YP_004597160.1| - 0.1 13.0 0.0 0.15 12.5 0.0 1.2 1 0 0 1 1 1 0 Resistance to inhibitors of cholinesterase homologue 3 DUF2207 PF09972.9 gi|336254053|ref|YP_004597160.1| - 0.18 10.5 0.1 0.24 10.1 0.1 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Sec61_beta PF03911.16 gi|336254053|ref|YP_004597160.1| - 3.2 7.8 5.4 16 5.6 1.0 2.8 3 0 0 3 3 3 0 Sec61beta family HupF_HypC PF01455.18 gi|336254054|ref|YP_004597161.1| - 0.0064 16.6 0.2 0.014 15.6 0.2 1.6 1 0 0 1 1 1 1 HupF/HypC family DNA_pol_B_N PF18094.1 gi|336254054|ref|YP_004597161.1| - 0.034 14.7 0.0 0.074 13.6 0.0 1.6 1 0 0 1 1 1 0 DNA polymerase beta N-terminal domain Acyl-CoA_dh_1 PF00441.24 gi|336254055|ref|YP_004597162.1| - 2.2e-47 161.0 0.4 3.2e-47 160.5 0.4 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|336254055|ref|YP_004597162.1| - 2.6e-38 131.1 0.2 5.8e-38 130.0 0.1 1.7 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|336254055|ref|YP_004597162.1| - 4.3e-25 87.8 0.0 6.7e-25 87.1 0.0 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|336254055|ref|YP_004597162.1| - 3.1e-15 56.6 0.9 4.9e-15 56.0 0.9 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain RIO1 PF01163.22 gi|336254057|ref|YP_004597164.1| - 5e-10 39.3 0.0 7.4e-10 38.7 0.0 1.2 1 0 0 1 1 1 1 RIO1 family APH PF01636.23 gi|336254057|ref|YP_004597164.1| - 8.2e-09 35.7 0.3 0.0025 17.8 0.3 2.3 1 1 1 2 2 2 2 Phosphotransferase enzyme family Kdo PF06293.14 gi|336254057|ref|YP_004597164.1| - 5.5e-06 25.9 0.0 1.1e-05 24.9 0.0 1.4 1 0 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase PF00069.25 gi|336254057|ref|YP_004597164.1| - 0.00026 20.4 0.0 0.00036 20.0 0.0 1.1 1 0 0 1 1 1 1 Protein kinase domain APH_6_hur PF04655.14 gi|336254057|ref|YP_004597164.1| - 0.015 14.7 0.0 0.02 14.3 0.0 1.3 1 0 0 1 1 1 0 Aminoglycoside/hydroxyurea antibiotic resistance kinase Kinase-PolyVal PF18762.1 gi|336254057|ref|YP_004597164.1| - 0.038 13.9 0.0 0.058 13.4 0.0 1.2 1 0 0 1 1 1 0 Serine/Threonine/Tyrosine Kinase found in polyvalent proteins WaaY PF06176.11 gi|336254057|ref|YP_004597164.1| - 0.12 12.0 0.0 0.18 11.4 0.0 1.3 1 0 0 1 1 1 0 Lipopolysaccharide core biosynthesis protein (WaaY) Fructosamin_kin PF03881.14 gi|336254057|ref|YP_004597164.1| - 0.14 11.3 0.0 3.7 6.6 0.0 2.4 2 1 1 3 3 3 0 Fructosamine kinase Aldedh PF00171.22 gi|336254058|ref|YP_004597165.1| - 1.3e-143 478.9 0.0 1.5e-143 478.7 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family OmdA PF13376.6 gi|336254058|ref|YP_004597165.1| - 0.026 14.5 0.9 0.054 13.5 0.9 1.4 1 0 0 1 1 1 0 Bacteriocin-protection, YdeI or OmpD-Associated SPOUT_MTase_2 PF14419.6 gi|336254058|ref|YP_004597165.1| - 0.034 13.5 0.0 0.15 11.4 0.0 1.9 2 0 0 2 2 2 0 AF2226-like SPOUT RNA Methylase fused to THUMP LuxC PF05893.14 gi|336254058|ref|YP_004597165.1| - 0.15 11.1 0.0 0.3 10.1 0.0 1.5 1 1 0 1 1 1 0 Acyl-CoA reductase (LuxC) CN_hydrolase PF00795.22 gi|336254059|ref|YP_004597166.1| - 5.6e-50 170.1 0.0 6.4e-50 169.9 0.0 1.0 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase DUF3875 PF12991.7 gi|336254059|ref|YP_004597166.1| - 0.05 13.6 0.0 2.1 8.4 0.0 2.6 2 0 0 2 2 2 0 Domain of unknown function, B. Theta Gene description (DUF3875) Polyketide_cyc2 PF10604.9 gi|336254060|ref|YP_004597167.1| - 1.5e-17 64.2 1.7 1.7e-17 64.0 1.7 1.0 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport COXG PF06240.13 gi|336254060|ref|YP_004597167.1| - 1.7e-06 27.9 0.0 2.2e-06 27.5 0.0 1.2 1 0 0 1 1 1 1 Carbon monoxide dehydrogenase subunit G (CoxG) Polyketide_cyc PF03364.20 gi|336254060|ref|YP_004597167.1| - 0.00016 21.9 0.2 0.00021 21.5 0.2 1.2 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport AHSA1 PF08327.11 gi|336254060|ref|YP_004597167.1| - 0.083 13.1 0.5 0.42 10.8 0.5 2.0 1 1 0 1 1 1 0 Activator of Hsp90 ATPase homolog 1-like protein FaeA PF04703.12 gi|336254061|ref|YP_004597168.1| - 0.0038 17.6 0.0 0.005 17.2 0.0 1.2 1 0 0 1 1 1 1 FaeA-like protein Put_DNA-bind_N PF06971.13 gi|336254061|ref|YP_004597168.1| - 0.0076 16.2 0.0 0.013 15.5 0.0 1.3 1 0 0 1 1 1 1 Putative DNA-binding protein N-terminus z-alpha PF02295.17 gi|336254061|ref|YP_004597168.1| - 0.08 13.0 0.0 0.13 12.3 0.0 1.4 1 1 0 1 1 1 0 Adenosine deaminase z-alpha domain HTH_AsnC-type PF13404.6 gi|336254061|ref|YP_004597168.1| - 0.097 12.5 0.1 0.38 10.6 0.1 2.0 1 1 0 1 1 1 0 AsnC-type helix-turn-helix domain DUF3767 PF12597.8 gi|336254062|ref|YP_004597169.1| - 1.6 8.6 3.5 2 8.3 3.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3767) PhoU PF01895.19 gi|336254063|ref|YP_004597170.1| - 3.1e-15 56.4 2.7 2.8e-11 43.7 0.0 2.6 2 0 0 2 2 2 2 PhoU domain MazE_antitoxin PF04014.18 gi|336254063|ref|YP_004597170.1| - 9e-07 28.7 0.0 2e-06 27.6 0.0 1.6 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin NAD_kinase PF01513.21 gi|336254064|ref|YP_004597171.1| - 2.5e-41 141.8 1.7 7.2e-41 140.3 1.7 1.6 1 1 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|336254064|ref|YP_004597171.1| - 4.1e-06 26.4 0.7 1e-05 25.1 0.1 2.0 2 0 0 2 2 2 1 Diacylglycerol kinase catalytic domain MoCF_biosynth PF00994.24 gi|336254066|ref|YP_004597173.1| - 7.2e-38 129.5 0.1 1.2e-37 128.8 0.1 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain HTH_15 PF12324.8 gi|336254066|ref|YP_004597173.1| - 0.024 14.6 0.3 0.096 12.6 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain of alkylmercury lyase HTH_20 PF12840.7 gi|336254067|ref|YP_004597174.1| - 5.2e-07 29.6 0.1 1.1e-06 28.5 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.19 gi|336254067|ref|YP_004597174.1| - 0.00022 21.1 0.0 0.00042 20.1 0.0 1.6 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|336254067|ref|YP_004597174.1| - 0.00042 19.8 0.0 0.00097 18.7 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding RP-C PF03428.13 gi|336254067|ref|YP_004597174.1| - 0.003 17.2 0.0 0.0055 16.4 0.0 1.4 1 1 0 1 1 1 1 Replication protein C N-terminal domain PadR PF03551.14 gi|336254067|ref|YP_004597174.1| - 0.066 13.2 0.0 0.11 12.5 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family PTPS PF01242.19 gi|336254068|ref|YP_004597175.1| - 6.8e-23 81.0 0.0 1e-22 80.4 0.0 1.1 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase GYD PF08734.11 gi|336254068|ref|YP_004597175.1| - 0.12 12.4 0.1 0.19 11.7 0.1 1.4 1 0 0 1 1 1 0 GYD domain HHH_7 PF14635.6 gi|336254068|ref|YP_004597175.1| - 0.13 12.6 0.1 0.19 12.1 0.1 1.2 1 0 0 1 1 1 0 Helix-hairpin-helix motif Radical_SAM PF04055.21 gi|336254069|ref|YP_004597176.1| - 9.1e-27 94.5 0.6 1.7e-26 93.6 0.6 1.5 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|336254069|ref|YP_004597176.1| - 4e-15 56.0 0.0 6.3e-15 55.4 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|336254069|ref|YP_004597176.1| - 1.2e-11 45.0 0.0 1.8e-11 44.4 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain TP_methylase PF00590.20 gi|336254069|ref|YP_004597176.1| - 0.075 13.0 0.1 0.37 10.7 0.0 1.9 2 0 0 2 2 2 0 Tetrapyrrole (Corrin/Porphyrin) Methylases Pho86 PF11124.8 gi|336254069|ref|YP_004597176.1| - 0.25 10.8 0.0 0.34 10.3 0.0 1.1 1 0 0 1 1 1 0 Inorganic phosphate transporter Pho86 QueC PF06508.13 gi|336254070|ref|YP_004597177.1| - 5.9e-74 248.1 0.0 6.8e-74 247.9 0.0 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ThiI PF02568.14 gi|336254070|ref|YP_004597177.1| - 5.3e-07 29.4 0.0 1.4e-06 28.1 0.0 1.7 2 1 0 2 2 2 1 Thiamine biosynthesis protein (ThiI) tRNA_Me_trans PF03054.16 gi|336254070|ref|YP_004597177.1| - 0.00016 20.6 0.0 0.00021 20.2 0.0 1.1 1 0 0 1 1 1 1 tRNA methyl transferase NAD_synthase PF02540.17 gi|336254070|ref|YP_004597177.1| - 0.022 13.9 0.0 0.038 13.1 0.0 1.4 1 1 0 1 1 1 0 NAD synthase Asn_synthase PF00733.21 gi|336254070|ref|YP_004597177.1| - 0.026 14.2 0.2 0.037 13.7 0.2 1.2 1 0 0 1 1 1 0 Asparagine synthase ADH_zinc_N PF00107.26 gi|336254072|ref|YP_004597179.1| - 1e-22 80.5 0.1 2.3e-22 79.4 0.1 1.6 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|336254072|ref|YP_004597179.1| - 1.1e-22 81.5 0.5 2e-22 80.7 0.2 1.6 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_N PF08240.12 gi|336254072|ref|YP_004597179.1| - 1.4e-06 28.1 0.4 4.3e-06 26.6 0.0 2.0 2 1 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain adh_short PF00106.25 gi|336254072|ref|YP_004597179.1| - 0.073 12.5 0.2 0.14 11.6 0.2 1.4 1 0 0 1 1 1 0 short chain dehydrogenase ADH_N_2 PF16884.5 gi|336254072|ref|YP_004597179.1| - 0.084 12.8 0.1 0.21 11.5 0.1 1.6 1 1 0 1 1 1 0 N-terminal domain of oxidoreductase Fe-ADH PF00465.19 gi|336254074|ref|YP_004597181.1| - 4.6e-61 206.6 3.4 5.7e-61 206.3 3.4 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.6 gi|336254074|ref|YP_004597181.1| - 6.9e-10 39.1 0.3 8e-07 29.0 0.0 2.2 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase AAA_12 PF13087.6 gi|336254075|ref|YP_004597182.1| - 1.4e-46 158.6 0.0 1.3e-45 155.5 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_11 PF13086.6 gi|336254075|ref|YP_004597182.1| - 8.6e-34 117.5 0.3 1.3e-15 58.0 0.1 2.3 2 0 0 2 2 2 2 AAA domain AAA_30 PF13604.6 gi|336254075|ref|YP_004597182.1| - 7.5e-15 55.1 0.1 2.1e-14 53.7 0.1 1.7 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.6 gi|336254075|ref|YP_004597182.1| - 1.5e-09 38.3 0.0 3.4e-09 37.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain Viral_helicase1 PF01443.18 gi|336254075|ref|YP_004597182.1| - 1.5e-08 34.7 0.0 0.0005 19.9 0.0 3.2 3 0 0 3 3 3 2 Viral (Superfamily 1) RNA helicase AAA_22 PF13401.6 gi|336254075|ref|YP_004597182.1| - 0.00028 21.1 0.2 0.03 14.6 0.0 2.8 2 1 0 2 2 2 1 AAA domain AAA_24 PF13479.6 gi|336254075|ref|YP_004597182.1| - 0.001 18.8 0.0 0.0027 17.5 0.0 1.6 1 0 0 1 1 1 1 AAA domain DUF2075 PF09848.9 gi|336254075|ref|YP_004597182.1| - 0.0046 16.3 0.0 0.012 14.8 0.0 1.8 1 1 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_16 PF13191.6 gi|336254075|ref|YP_004597182.1| - 0.0059 17.0 0.2 0.069 13.5 0.0 2.4 2 0 0 2 2 2 1 AAA ATPase domain ResIII PF04851.15 gi|336254075|ref|YP_004597182.1| - 0.0061 16.6 0.0 0.022 14.7 0.0 1.9 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_RecD PF05127.14 gi|336254075|ref|YP_004597182.1| - 0.0065 16.3 0.0 0.014 15.2 0.0 1.6 1 0 0 1 1 1 1 Helicase UvrD-helicase PF00580.21 gi|336254075|ref|YP_004597182.1| - 0.015 14.8 0.0 0.032 13.7 0.0 1.5 2 0 0 2 2 2 0 UvrD/REP helicase N-terminal domain AAA PF00004.29 gi|336254075|ref|YP_004597182.1| - 0.022 15.2 2.6 0.2 12.1 0.1 3.1 3 1 0 3 3 3 0 ATPase family associated with various cellular activities (AAA) UvrD_C_2 PF13538.6 gi|336254075|ref|YP_004597182.1| - 0.034 14.0 0.2 0.22 11.4 0.2 2.3 1 1 0 1 1 1 0 UvrD-like helicase C-terminal domain PhoH PF02562.16 gi|336254075|ref|YP_004597182.1| - 0.2 11.1 0.0 2.5 7.5 0.0 2.2 2 0 0 2 2 2 0 PhoH-like protein tRNA_anti-codon PF01336.25 gi|336254076|ref|YP_004597183.1| - 0.00015 21.7 8.3 0.13 12.2 0.1 4.3 4 0 0 4 4 4 3 OB-fold nucleic acid binding domain DUF4777 PF16007.5 gi|336254077|ref|YP_004597184.1| - 0.14 12.5 0.0 0.44 10.8 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4777) Metallophos_2 PF12850.7 gi|336254078|ref|YP_004597185.1| - 1.9e-07 31.4 0.0 3e-07 30.8 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|336254078|ref|YP_004597185.1| - 1e-05 26.1 0.5 7.7e-05 23.3 0.0 2.0 1 1 1 2 2 2 1 Calcineurin-like phosphoesterase Oxidored_molyb PF00174.19 gi|336254079|ref|YP_004597186.1| - 1.5e-10 40.9 0.0 5.3e-10 39.2 0.0 1.7 1 1 0 1 1 1 1 Oxidoreductase molybdopterin binding domain DUF3910 PF13049.6 gi|336254080|ref|YP_004597187.1| - 0.11 12.8 0.1 0.18 12.1 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3910) SNF PF00209.18 gi|336254081|ref|YP_004597188.1| - 7.2e-57 193.2 35.3 3.9e-31 108.4 18.4 2.0 2 0 0 2 2 2 2 Sodium:neurotransmitter symporter family Carboxyl_trans PF01039.22 gi|336254082|ref|YP_004597189.1| - 1.3e-197 657.4 0.0 1.4e-197 657.2 0.0 1.0 1 0 0 1 1 1 1 Carboxyl transferase domain MdcE PF06833.11 gi|336254082|ref|YP_004597189.1| - 4.5e-05 23.1 0.0 0.0001 21.9 0.0 1.5 2 0 0 2 2 2 1 Malonate decarboxylase gamma subunit (MdcE) BIV_Env PF05858.12 gi|336254082|ref|YP_004597189.1| - 0.39 8.9 1.0 0.52 8.4 1.0 1.1 1 0 0 1 1 1 0 Bovine immunodeficiency virus surface protein (SU) Methyltransf_25 PF13649.6 gi|336254084|ref|YP_004597191.1| - 1.7e-10 41.5 0.0 5.8e-10 39.7 0.0 1.9 3 0 0 3 3 3 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|336254084|ref|YP_004597191.1| - 1.1e-09 38.8 0.1 8.1e-09 36.0 0.0 2.4 3 1 0 3 3 3 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|336254084|ref|YP_004597191.1| - 1.2e-05 26.0 0.0 2.4e-05 25.0 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|336254084|ref|YP_004597191.1| - 7.9e-05 21.8 0.0 0.00011 21.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_2 PF00891.18 gi|336254084|ref|YP_004597191.1| - 0.019 14.3 0.0 0.023 14.0 0.0 1.1 1 0 0 1 1 1 0 O-methyltransferase domain Cons_hypoth95 PF03602.15 gi|336254084|ref|YP_004597191.1| - 0.13 11.8 0.0 0.21 11.2 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 95 CPSase_L_D2 PF02786.17 gi|336254085|ref|YP_004597192.1| - 2.7e-72 242.7 0.1 1.2e-71 240.6 0.1 2.0 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Biotin_carb_N PF00289.22 gi|336254085|ref|YP_004597192.1| - 3e-45 153.3 0.8 7e-45 152.1 0.5 1.8 2 0 0 2 2 1 1 Biotin carboxylase, N-terminal domain Biotin_carb_C PF02785.19 gi|336254085|ref|YP_004597192.1| - 1.1e-34 118.7 0.0 2.2e-34 117.8 0.0 1.5 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain Biotin_lipoyl PF00364.22 gi|336254085|ref|YP_004597192.1| - 7.1e-16 57.8 7.3 2.1e-15 56.3 7.3 1.8 1 0 0 1 1 1 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 gi|336254085|ref|YP_004597192.1| - 1e-07 31.6 3.4 0.0012 18.7 0.4 2.7 1 1 1 2 2 2 2 Biotin-lipoyl like ATP-grasp PF02222.22 gi|336254085|ref|YP_004597192.1| - 2.4e-06 27.3 0.0 4.7e-06 26.3 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|336254085|ref|YP_004597192.1| - 4.6e-06 26.3 0.0 1.1e-05 25.0 0.0 1.6 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus GARS_A PF01071.19 gi|336254085|ref|YP_004597192.1| - 5.4e-05 23.0 0.0 0.00011 22.1 0.0 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain HlyD_3 PF13437.6 gi|336254085|ref|YP_004597192.1| - 0.0089 16.7 1.8 5.1 7.8 0.1 2.8 2 0 0 2 2 2 2 HlyD family secretion protein HlyD_D23 PF16576.5 gi|336254085|ref|YP_004597192.1| - 0.029 13.6 0.7 1.6 7.9 0.1 2.4 1 1 1 2 2 2 0 Barrel-sandwich domain of CusB or HlyD membrane-fusion RnfC_N PF13375.6 gi|336254085|ref|YP_004597192.1| - 0.035 14.0 0.8 0.12 12.3 0.4 2.1 2 0 0 2 2 2 0 RnfC Barrel sandwich hybrid domain GCV_H PF01597.19 gi|336254085|ref|YP_004597192.1| - 0.044 13.7 2.3 0.12 12.2 1.6 2.0 2 0 0 2 2 2 0 Glycine cleavage H-protein Radical_SAM PF04055.21 gi|336254086|ref|YP_004597193.1| - 9.8e-21 74.8 0.0 1.5e-20 74.2 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|336254086|ref|YP_004597193.1| - 2.9e-05 24.4 0.0 4.4e-05 23.8 0.0 1.2 1 0 0 1 1 1 1 4Fe-4S single cluster domain SPASM PF13186.6 gi|336254086|ref|YP_004597193.1| - 0.00022 21.6 0.0 0.00056 20.4 0.0 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain Fer4_14 PF13394.6 gi|336254086|ref|YP_004597193.1| - 0.0013 18.9 0.0 0.0019 18.3 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain TP_methylase PF00590.20 gi|336254086|ref|YP_004597193.1| - 0.019 14.9 0.1 0.035 14.0 0.1 1.6 1 1 0 1 1 1 0 Tetrapyrrole (Corrin/Porphyrin) Methylases DUF1906 PF08924.11 gi|336254086|ref|YP_004597193.1| - 0.057 13.6 0.0 0.1 12.7 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1906) PaaB PF06243.11 gi|336254087|ref|YP_004597194.1| - 1.5e-08 34.8 0.0 1.9e-08 34.4 0.0 1.3 1 0 0 1 1 1 1 Phenylacetic acid degradation B Pilin_N PF07790.11 gi|336254088|ref|YP_004597195.1| - 1.2e-17 64.6 0.5 1.9e-17 64.0 0.5 1.3 1 0 0 1 1 1 1 Archaeal Type IV pilin, N-terminal DUF4443 PF14544.6 gi|336254089|ref|YP_004597196.1| - 0.14 12.4 0.1 0.18 12.0 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4443) ThiS PF02597.20 gi|336254090|ref|YP_004597197.1| - 6.1e-06 26.8 0.1 5.3e-05 23.8 0.1 2.1 1 1 0 1 1 1 1 ThiS family Sugarporin_N PF11471.8 gi|336254091|ref|YP_004597198.1| - 2 8.5 7.5 0.086 12.8 0.8 2.3 2 0 0 2 2 2 0 Maltoporin periplasmic N-terminal extension DUF4519 PF15012.6 gi|336254093|ref|YP_004597200.1| - 0.75 10.0 4.0 1.1 9.5 4.0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4519) OppC_N PF12911.7 gi|336254093|ref|YP_004597200.1| - 0.85 9.6 3.8 0.94 9.5 3.8 1.1 1 0 0 1 1 1 0 N-terminal TM domain of oligopeptide transport permease C HD PF01966.22 gi|336254094|ref|YP_004597201.1| - 3.6e-12 46.6 1.7 8.6e-12 45.4 1.7 1.7 1 0 0 1 1 1 1 HD domain DNA_ligase_A_M PF01068.21 gi|336254095|ref|YP_004597202.1| - 3e-46 157.6 0.0 5.8e-46 156.7 0.0 1.5 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.14 gi|336254095|ref|YP_004597202.1| - 3.7e-39 134.8 0.0 8e-38 130.5 0.0 2.3 1 1 1 2 2 2 2 DNA ligase N terminus DNA_ligase_A_C PF04679.15 gi|336254095|ref|YP_004597202.1| - 6.2e-18 65.2 0.0 1.8e-17 63.7 0.0 1.8 1 0 0 1 1 1 1 ATP dependent DNA ligase C terminal region mRNA_cap_enzyme PF01331.19 gi|336254095|ref|YP_004597202.1| - 0.031 14.1 0.0 4.8 7.0 0.0 2.2 2 0 0 2 2 2 0 mRNA capping enzyme, catalytic domain GCS PF03074.16 gi|336254096|ref|YP_004597203.1| - 0.1 12.0 0.1 0.92 8.8 0.0 2.1 2 0 0 2 2 2 0 Glutamate-cysteine ligase UPF0052 PF01933.18 gi|336254097|ref|YP_004597204.1| - 1e-45 156.3 0.0 1.3e-45 156.0 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0052 Dus PF01207.17 gi|336254098|ref|YP_004597205.1| - 8.2e-09 35.0 0.4 5.1e-08 32.4 0.4 1.8 1 1 0 1 1 1 1 Dihydrouridine synthase (Dus) His_biosynth PF00977.21 gi|336254098|ref|YP_004597205.1| - 0.0014 18.1 0.0 0.0025 17.3 0.0 1.5 1 1 0 1 1 1 1 Histidine biosynthesis protein Radical_SAM PF04055.21 gi|336254098|ref|YP_004597205.1| - 0.0071 16.7 0.2 0.085 13.2 0.1 2.4 1 1 1 2 2 2 1 Radical SAM superfamily NmrA PF05368.13 gi|336254098|ref|YP_004597205.1| - 0.01 15.4 0.5 0.075 12.6 0.4 1.9 2 0 0 2 2 2 0 NmrA-like family DUF1633 PF07794.11 gi|336254098|ref|YP_004597205.1| - 0.023 12.9 2.3 0.028 12.6 2.3 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1633) IGPS PF00218.21 gi|336254098|ref|YP_004597205.1| - 0.17 11.0 0.0 0.52 9.4 0.0 1.9 2 1 0 2 2 2 0 Indole-3-glycerol phosphate synthase SpoIIAA-like PF11964.8 gi|336254099|ref|YP_004597206.1| - 0.098 13.7 0.1 0.14 13.2 0.1 1.4 1 1 0 1 1 1 0 SpoIIAA-like SBP_bac_6 PF13343.6 gi|336254099|ref|YP_004597206.1| - 0.099 12.0 0.0 0.12 11.7 0.0 1.2 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein DUF3695 PF12494.8 gi|336254100|ref|YP_004597207.1| - 0.15 12.0 0.5 0.3 11.0 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3695) tRNA_anti-codon PF01336.25 gi|336254102|ref|YP_004597209.1| - 9.2e-09 35.2 0.1 1.9e-08 34.1 0.1 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain DHH PF01368.20 gi|336254102|ref|YP_004597209.1| - 0.0021 18.3 0.3 0.0039 17.4 0.3 1.4 1 0 0 1 1 1 1 DHH family tRNA_anti_2 PF13742.6 gi|336254102|ref|YP_004597209.1| - 0.0051 17.0 0.0 0.011 16.0 0.0 1.5 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain S1 PF00575.23 gi|336254102|ref|YP_004597209.1| - 0.013 15.8 1.5 0.026 14.9 0.1 2.2 2 0 0 2 2 2 0 S1 RNA binding domain Rib_5-P_isom_A PF06026.14 gi|336254102|ref|YP_004597209.1| - 0.072 12.7 0.0 0.17 11.5 0.0 1.6 1 0 0 1 1 1 0 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) S1_2 PF13509.6 gi|336254102|ref|YP_004597209.1| - 0.12 12.5 0.1 0.35 11.0 0.1 1.8 1 0 0 1 1 1 0 S1 domain Phe_tRNA-synt_N PF02912.18 gi|336254102|ref|YP_004597209.1| - 3.6 7.6 5.2 14 5.7 0.1 3.1 3 0 0 3 3 3 0 Aminoacyl tRNA synthetase class II, N-terminal domain Usp PF00582.26 gi|336254103|ref|YP_004597210.1| - 1.4e-16 61.3 0.7 1.6e-16 61.1 0.7 1.1 1 0 0 1 1 1 1 Universal stress protein family GntP_permease PF02447.16 gi|336254104|ref|YP_004597211.1| - 2.4e-95 319.8 33.4 2.8e-95 319.6 33.4 1.0 1 0 0 1 1 1 1 GntP family permease CitMHS PF03600.16 gi|336254104|ref|YP_004597211.1| - 1e-14 54.5 38.6 1e-14 54.5 38.6 2.1 1 1 1 2 2 2 1 Citrate transporter Na_H_antiport_2 PF13726.6 gi|336254104|ref|YP_004597211.1| - 0.025 14.7 2.8 0.025 14.7 2.8 3.6 4 1 0 4 4 4 0 Na+-H+ antiporter family Pox_A14 PF05767.12 gi|336254104|ref|YP_004597211.1| - 0.69 10.1 11.4 2.9 8.1 0.0 4.0 4 0 0 4 4 4 0 Poxvirus virion envelope protein A14 DUF3007 PF11460.8 gi|336254104|ref|YP_004597211.1| - 1.7 9.0 6.1 0.43 10.9 1.1 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3007) Prok-JAB PF14464.6 gi|336254105|ref|YP_004597212.1| - 3.1e-09 36.6 0.0 4.4e-09 36.2 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain RadC PF04002.15 gi|336254105|ref|YP_004597212.1| - 0.02 14.9 0.0 0.034 14.1 0.0 1.4 1 0 0 1 1 1 0 RadC-like JAB domain CTP_transf_like PF01467.26 gi|336254106|ref|YP_004597213.1| - 1.9e-17 63.8 0.2 2.2e-17 63.6 0.2 1.1 1 0 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 gi|336254106|ref|YP_004597213.1| - 0.08 12.8 0.1 0.15 12.0 0.1 1.5 1 0 0 1 1 1 0 FAD synthetase ILVD_EDD PF00920.21 gi|336254108|ref|YP_004597215.1| - 6.6e-197 655.2 0.7 7.5e-197 655.0 0.7 1.0 1 0 0 1 1 1 1 Dehydratase family DGC PF08859.11 gi|336254108|ref|YP_004597215.1| - 0.16 12.1 0.2 1.7 8.8 0.0 2.3 2 0 0 2 2 2 0 DGC domain NTP_transf_3 PF12804.7 gi|336254109|ref|YP_004597216.1| - 1.2e-31 110.2 2.9 1.6e-31 109.8 2.9 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.19 gi|336254109|ref|YP_004597216.1| - 0.0019 18.2 0.0 0.0088 16.0 0.0 1.9 2 1 1 3 3 3 1 Cytidylyltransferase CdiA_C_tRNase PF18664.1 gi|336254109|ref|YP_004597216.1| - 0.072 13.3 0.0 0.12 12.6 0.0 1.3 1 0 0 1 1 1 0 CdiA C-terminal tRNase domain GHMP_kinases_N PF00288.26 gi|336254111|ref|YP_004597218.1| - 2.2e-07 31.0 1.1 4.3e-07 30.1 0.4 1.9 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|336254111|ref|YP_004597218.1| - 1.3e-05 25.5 0.2 2.2e-05 24.7 0.2 1.4 1 0 0 1 1 1 1 GHMP kinases C terminal ATPase PF06745.13 gi|336254112|ref|YP_004597219.1| - 1.6e-06 27.7 0.0 0.0011 18.4 0.1 2.2 2 0 0 2 2 2 2 KaiC Rad51 PF08423.11 gi|336254112|ref|YP_004597219.1| - 0.00011 21.5 0.0 0.0076 15.5 0.0 2.3 2 0 0 2 2 2 2 Rad51 AAA_25 PF13481.6 gi|336254112|ref|YP_004597219.1| - 0.031 13.8 3.0 0.51 9.9 3.0 2.2 1 1 0 1 1 1 0 AAA domain Erp_C PF06780.11 gi|336254113|ref|YP_004597220.1| - 0.0018 18.3 1.2 0.0032 17.5 1.2 1.4 1 0 0 1 1 1 1 Erp protein C-terminus Syntaxin-6_N PF09177.11 gi|336254113|ref|YP_004597220.1| - 0.0029 18.1 1.5 0.019 15.5 1.3 2.4 1 1 1 2 2 2 1 Syntaxin 6, N-terminal DUF2746 PF10874.8 gi|336254113|ref|YP_004597220.1| - 0.0081 16.6 0.9 0.034 14.5 0.2 2.2 1 1 1 2 2 2 1 Protein of unknown function (DUF2746) PSD2 PF07624.11 gi|336254113|ref|YP_004597220.1| - 0.01 15.6 1.8 0.1 12.4 0.3 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1585) TPR_MLP1_2 PF07926.12 gi|336254113|ref|YP_004597220.1| - 0.026 14.6 1.4 0.026 14.6 1.4 2.0 2 1 0 2 2 2 0 TPR/MLP1/MLP2-like protein HypA PF01155.19 gi|336254113|ref|YP_004597220.1| - 0.035 14.1 0.0 0.067 13.2 0.0 1.6 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA MAP65_ASE1 PF03999.12 gi|336254113|ref|YP_004597220.1| - 0.038 12.7 0.5 0.05 12.3 0.5 1.1 1 0 0 1 1 1 0 Microtubule associated protein (MAP65/ASE1 family) TackOD1 PF18551.1 gi|336254113|ref|YP_004597220.1| - 0.042 13.5 0.0 0.066 12.9 0.0 1.2 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 DUF713 PF05218.14 gi|336254113|ref|YP_004597220.1| - 0.05 13.3 0.2 0.08 12.7 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF713) Zn-ribbon_8 PF09723.10 gi|336254113|ref|YP_004597220.1| - 0.058 13.5 1.0 0.15 12.2 1.0 1.7 1 0 0 1 1 1 0 Zinc ribbon domain TolA_bind_tri PF16331.5 gi|336254113|ref|YP_004597220.1| - 0.09 12.9 2.9 0.49 10.5 0.4 2.5 2 0 0 2 2 2 0 TolA binding protein trimerisation FlaC_arch PF05377.11 gi|336254113|ref|YP_004597220.1| - 0.1 13.0 0.1 4.7 7.7 0.0 2.4 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) XPA_N PF01286.18 gi|336254113|ref|YP_004597220.1| - 0.12 12.4 0.7 5.6 7.1 0.1 2.5 2 0 0 2 2 2 0 XPA protein N-terminal Spc7 PF08317.11 gi|336254113|ref|YP_004597220.1| - 0.26 10.2 3.7 0.46 9.3 3.5 1.5 1 1 0 1 1 1 0 Spc7 kinetochore protein FUSC PF04632.12 gi|336254113|ref|YP_004597220.1| - 0.27 9.7 9.0 0.19 10.2 7.3 1.6 1 1 1 2 2 2 0 Fusaric acid resistance protein family PhnA_Zn_Ribbon PF08274.12 gi|336254113|ref|YP_004597220.1| - 0.29 11.1 2.8 3.9 7.5 0.4 2.3 2 0 0 2 2 2 0 PhnA Zinc-Ribbon Latarcin PF10279.9 gi|336254113|ref|YP_004597220.1| - 0.58 10.6 6.3 1.8 9.0 0.2 2.4 2 0 0 2 2 2 0 Latarcin precursor DUF4200 PF13863.6 gi|336254113|ref|YP_004597220.1| - 0.71 10.3 4.4 12 6.4 3.3 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4200) DUF2205 PF10224.9 gi|336254113|ref|YP_004597220.1| - 1.4 8.9 3.9 1.5 8.8 0.7 2.4 2 1 1 3 3 3 0 Short coiled-coil protein DinB_2 PF12867.7 gi|336254113|ref|YP_004597220.1| - 4.2 7.9 9.2 2.7 8.5 0.6 2.6 2 1 1 3 3 2 0 DinB superfamily MIF4G_like_2 PF09090.11 gi|336254113|ref|YP_004597220.1| - 8.3 5.8 8.6 1.3 8.5 3.3 2.2 2 1 0 2 2 2 0 MIF4G like TFIIS_C PF01096.18 gi|336254115|ref|YP_004597222.1| - 1e-16 60.5 4.0 1e-16 60.5 4.0 3.0 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.16 gi|336254115|ref|YP_004597222.1| - 9.3e-08 31.8 8.6 1.1e-07 31.5 1.6 3.0 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit zf-ribbon_3 PF13248.6 gi|336254115|ref|YP_004597222.1| - 1.3e-05 24.4 12.5 0.0024 17.2 0.9 3.4 3 0 0 3 3 3 2 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|336254115|ref|YP_004597222.1| - 3.8e-05 23.5 12.7 0.0026 17.7 3.1 2.6 2 1 0 2 2 2 2 Putative transposase DNA-binding domain DZR PF12773.7 gi|336254115|ref|YP_004597222.1| - 5.2e-05 23.2 11.1 0.0015 18.5 1.3 2.7 2 1 0 2 2 2 2 Double zinc ribbon Prok-RING_1 PF14446.6 gi|336254115|ref|YP_004597222.1| - 0.00039 20.3 12.4 0.0052 16.7 2.2 3.2 3 1 0 3 3 3 2 Prokaryotic RING finger family 1 zinc_ribbon_2 PF13240.6 gi|336254115|ref|YP_004597222.1| - 0.0012 18.5 10.0 2.5 8.0 0.1 4.3 4 0 0 4 4 4 1 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|336254115|ref|YP_004597222.1| - 0.0026 17.7 6.5 0.0037 17.2 0.4 2.7 2 1 1 3 3 3 1 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|336254115|ref|YP_004597222.1| - 0.0031 17.0 16.0 1.5 8.4 0.7 4.3 3 2 0 3 3 3 1 TFIIB zinc-binding HypA PF01155.19 gi|336254115|ref|YP_004597222.1| - 0.006 16.6 8.8 0.51 10.4 0.8 2.4 1 1 1 2 2 2 2 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-RRN7 PF11781.8 gi|336254115|ref|YP_004597222.1| - 0.0061 16.2 10.7 0.31 10.8 0.3 4.1 4 0 0 4 4 4 1 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 ADK_lid PF05191.14 gi|336254115|ref|YP_004597222.1| - 0.0097 15.9 12.0 3 7.9 0.3 4.1 4 0 0 4 4 4 1 Adenylate kinase, active site lid PhnA_Zn_Ribbon PF08274.12 gi|336254115|ref|YP_004597222.1| - 0.022 14.7 10.3 4.4 7.4 0.1 4.1 4 0 0 4 4 4 0 PhnA Zinc-Ribbon zinc_ribbon_4 PF13717.6 gi|336254115|ref|YP_004597222.1| - 0.025 14.5 9.0 0.39 10.7 0.3 3.5 3 1 0 3 3 3 0 zinc-ribbon domain TackOD1 PF18551.1 gi|336254115|ref|YP_004597222.1| - 0.03 14.0 6.0 0.37 10.4 1.3 2.2 1 1 1 2 2 2 0 Thaumarchaeal output domain 1 Zn-ribbon_8 PF09723.10 gi|336254115|ref|YP_004597222.1| - 0.039 14.1 16.4 0.88 9.7 2.9 3.7 2 2 0 3 3 3 0 Zinc ribbon domain Nudix_N_2 PF14803.6 gi|336254115|ref|YP_004597222.1| - 0.039 13.9 16.0 0.25 11.3 2.7 4.1 2 2 1 4 4 4 0 Nudix N-terminal YhfH PF14149.6 gi|336254115|ref|YP_004597222.1| - 0.079 13.0 12.2 18 5.4 0.1 4.2 4 0 0 4 4 4 0 YhfH-like protein zf-ACC PF17848.1 gi|336254115|ref|YP_004597222.1| - 0.089 12.9 12.9 7.2 6.8 0.3 4.1 3 1 1 4 4 4 0 Acetyl-coA carboxylase zinc finger domain zf_UBZ PF18439.1 gi|336254115|ref|YP_004597222.1| - 0.091 12.4 14.5 1.1 8.9 0.1 4.1 3 1 1 4 4 4 0 Ubiquitin-Binding Zinc Finger DNA_RNApol_7kD PF03604.13 gi|336254115|ref|YP_004597222.1| - 0.11 12.3 12.1 0.39 10.4 0.2 3.7 3 1 1 4 4 4 0 DNA directed RNA polymerase, 7 kDa subunit Rubredoxin_2 PF18073.1 gi|336254115|ref|YP_004597222.1| - 0.15 11.8 14.6 8.4 6.2 0.1 4.3 4 0 0 4 4 4 0 Rubredoxin metal binding domain zf-piccolo PF05715.13 gi|336254115|ref|YP_004597222.1| - 0.22 11.7 9.8 4.8 7.4 0.1 3.7 1 1 2 3 3 3 0 Piccolo Zn-finger DUF2318 PF10080.9 gi|336254115|ref|YP_004597222.1| - 0.28 11.3 9.5 1 9.5 2.1 2.9 1 1 1 3 3 3 0 Predicted membrane protein (DUF2318) zf-RING_7 PF02591.15 gi|336254115|ref|YP_004597222.1| - 0.33 11.2 6.0 38 4.6 0.1 4.0 4 0 0 4 4 4 0 C4-type zinc ribbon domain GATA PF00320.27 gi|336254115|ref|YP_004597222.1| - 0.34 10.5 10.6 4.5 7.0 0.2 4.0 3 1 1 4 4 4 0 GATA zinc finger PHD PF00628.29 gi|336254115|ref|YP_004597222.1| - 0.67 9.9 11.5 1.6 8.7 1.5 2.5 2 1 0 2 2 2 0 PHD-finger zinc-ribbons_6 PF07191.12 gi|336254115|ref|YP_004597222.1| - 0.69 9.9 11.0 0.32 11.0 1.7 2.5 2 1 0 2 2 2 0 zinc-ribbons A2L_zn_ribbon PF08792.10 gi|336254115|ref|YP_004597222.1| - 1 9.1 13.1 16 5.3 2.4 4.1 3 1 0 3 3 3 0 A2L zinc ribbon domain zf-RING_5 PF14634.6 gi|336254115|ref|YP_004597222.1| - 1.1 9.3 11.0 3 7.9 1.0 3.1 2 1 0 2 2 2 0 zinc-RING finger domain Lar_restr_allev PF14354.6 gi|336254115|ref|YP_004597222.1| - 1.5 9.2 14.1 7.8 7.0 2.1 3.5 1 1 1 2 2 2 0 Restriction alleviation protein Lar UPF0547 PF10571.9 gi|336254115|ref|YP_004597222.1| - 2.1 8.5 14.4 1.9 8.6 1.1 3.8 4 0 0 4 4 4 0 Uncharacterised protein family UPF0547 C1_1 PF00130.22 gi|336254115|ref|YP_004597222.1| - 2.2 8.2 9.3 1.1 9.2 1.1 2.8 2 1 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DnaJ_CXXCXGXG PF00684.19 gi|336254115|ref|YP_004597222.1| - 4.4 7.7 10.7 6.3 7.2 6.1 2.4 1 1 1 2 2 2 0 DnaJ central domain zf-trcl PF13451.6 gi|336254115|ref|YP_004597222.1| - 6.1 6.8 16.3 29 4.7 0.1 4.1 3 1 1 4 4 4 0 Probable zinc-ribbon domain zf-NADH-PPase PF09297.11 gi|336254115|ref|YP_004597222.1| - 7.2 6.4 15.7 3 7.6 3.4 3.8 3 1 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain Zn_ribbon_recom PF13408.6 gi|336254115|ref|YP_004597222.1| - 9 6.9 12.1 31 5.2 0.2 3.8 3 1 1 4 4 4 0 Recombinase zinc beta ribbon domain Fer4_2 PF12797.7 gi|336254115|ref|YP_004597222.1| - 9.3 6.6 10.2 59 4.1 0.2 4.0 4 0 0 4 4 4 0 4Fe-4S binding domain zinc_ribbon_15 PF17032.5 gi|336254115|ref|YP_004597222.1| - 9.4 7.1 12.9 38 5.1 7.5 2.9 1 1 1 2 2 2 0 zinc-ribbon family Copper-bind PF00127.20 gi|336254116|ref|YP_004597223.1| - 7.3e-07 29.6 0.0 1.5e-06 28.6 0.0 1.5 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family TAT_signal PF10518.9 gi|336254116|ref|YP_004597223.1| - 0.008 16.0 2.6 0.014 15.2 2.6 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence DUF5518 PF17647.1 gi|336254117|ref|YP_004597224.1| - 1.6e-17 63.7 35.2 1.8e-17 63.5 35.2 1.0 1 0 0 1 1 1 1 Family of unknown function (DUF5518) DUF4013 PF13197.6 gi|336254117|ref|YP_004597224.1| - 0.19 11.5 18.8 0.023 14.5 5.9 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF4013) Rick_17kDa_Anti PF05433.15 gi|336254117|ref|YP_004597224.1| - 1.2 9.1 23.6 1.1 9.2 0.7 3.8 4 1 0 4 4 4 0 Glycine zipper 2TM domain IMS PF00817.20 gi|336254118|ref|YP_004597225.1| - 6.3e-38 130.1 0.0 1.1e-37 129.4 0.0 1.4 1 0 0 1 1 1 1 impB/mucB/samB family IMS_C PF11799.8 gi|336254118|ref|YP_004597225.1| - 1.3e-13 51.7 0.0 1.6e-12 48.2 0.0 2.3 2 1 0 2 2 2 1 impB/mucB/samB family C-terminal domain IMS_HHH PF11798.8 gi|336254118|ref|YP_004597225.1| - 1.5e-05 25.0 0.0 3.5e-05 23.9 0.0 1.6 1 0 0 1 1 1 1 IMS family HHH motif HHH_5 PF14520.6 gi|336254118|ref|YP_004597225.1| - 0.0036 17.9 0.0 0.016 15.8 0.0 2.1 1 0 0 1 1 1 1 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.9 gi|336254118|ref|YP_004597225.1| - 0.025 14.4 0.0 0.055 13.3 0.0 1.5 1 0 0 1 1 1 0 Fingers domain of DNA polymerase lambda Cdd1 PF11731.8 gi|336254118|ref|YP_004597225.1| - 0.035 14.3 0.0 0.079 13.2 0.0 1.6 1 0 0 1 1 1 0 Pathogenicity locus UDG PF03167.19 gi|336254120|ref|YP_004597227.1| - 1.3e-10 41.4 0.0 1.7e-10 41.1 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily DUF4918 PF16265.5 gi|336254120|ref|YP_004597227.1| - 0.085 12.4 0.0 0.13 11.8 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4918) HTH_10 PF04967.12 gi|336254121|ref|YP_004597228.1| - 3.9e-16 58.6 0.0 6.2e-16 57.9 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|336254121|ref|YP_004597228.1| - 1.5e-13 50.9 7.3 2.3e-13 50.3 7.3 1.2 1 0 0 1 1 1 1 GAF and HTH_10 associated domain Sigma70_r4 PF04545.16 gi|336254121|ref|YP_004597228.1| - 1.3e-07 31.1 0.2 3.2e-07 29.8 0.0 1.7 2 0 0 2 2 2 1 Sigma-70, region 4 MarR_2 PF12802.7 gi|336254121|ref|YP_004597228.1| - 0.0012 18.7 0.3 0.0039 17.0 0.0 2.0 2 0 0 2 2 2 1 MarR family HTH_AsnC-type PF13404.6 gi|336254121|ref|YP_004597228.1| - 0.0013 18.5 0.4 0.0033 17.2 0.4 1.7 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|336254121|ref|YP_004597228.1| - 0.0022 17.5 0.1 0.0043 16.6 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Sigma70_r4_2 PF08281.12 gi|336254121|ref|YP_004597228.1| - 0.0075 15.9 0.0 0.018 14.7 0.0 1.6 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_50 PF18024.1 gi|336254121|ref|YP_004597228.1| - 0.074 12.7 0.0 0.19 11.4 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain YdjM PF04307.14 gi|336254122|ref|YP_004597229.1| - 6.8e-17 61.3 14.4 3.9e-16 58.8 14.4 1.9 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase hemP PF10636.9 gi|336254122|ref|YP_004597229.1| - 0.83 9.5 2.6 7.6 6.4 0.5 2.4 2 0 0 2 2 2 0 Hemin uptake protein hemP COX15-CtaA PF02628.15 gi|336254123|ref|YP_004597230.1| - 1.5e-10 40.7 26.0 6.3e-07 28.8 9.4 3.3 1 1 3 4 4 4 4 Cytochrome oxidase assembly protein E1-E2_ATPase PF00122.20 gi|336254123|ref|YP_004597230.1| - 0.5 9.9 13.0 0.37 10.3 2.3 3.6 1 1 2 4 4 4 0 E1-E2 ATPase Peptidase_M24 PF00557.24 gi|336254124|ref|YP_004597231.1| - 2e-11 44.0 2.5 2.8e-11 43.5 2.5 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|336254124|ref|YP_004597231.1| - 9.4e-06 26.3 0.1 3.4e-05 24.5 0.0 2.0 2 0 0 2 2 2 1 Creatinase/Prolidase N-terminal domain TrmB PF01978.19 gi|336254125|ref|YP_004597232.1| - 7.5e-08 32.1 0.1 1.2e-07 31.5 0.1 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|336254125|ref|YP_004597232.1| - 4.1e-06 26.2 0.0 8.5e-06 25.2 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|336254125|ref|YP_004597232.1| - 0.0024 17.9 0.1 0.0047 17.0 0.1 1.5 1 1 0 1 1 1 1 Helix-turn-helix domain GntR PF00392.21 gi|336254125|ref|YP_004597232.1| - 0.0061 16.2 0.1 0.015 14.9 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_IclR PF09339.10 gi|336254125|ref|YP_004597232.1| - 0.01 15.6 0.0 0.016 15.0 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain TFIIE_alpha PF02002.17 gi|336254125|ref|YP_004597232.1| - 0.021 14.7 0.0 0.032 14.1 0.0 1.3 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_40 PF14493.6 gi|336254125|ref|YP_004597232.1| - 0.081 13.4 0.0 0.13 12.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_9 PF08221.11 gi|336254125|ref|YP_004597232.1| - 0.13 12.3 0.0 0.21 11.7 0.0 1.3 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain Topo-VIb_trans PF09239.11 gi|336254126|ref|YP_004597233.1| - 2.2e-62 209.6 0.0 4e-62 208.7 0.0 1.4 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer Top6b_C PF18000.1 gi|336254126|ref|YP_004597233.1| - 2.2e-39 134.1 3.9 2.2e-39 134.1 3.9 2.3 3 0 0 3 3 3 1 Type 2 DNA topoisomerase 6 subunit B C-terminal domain HATPase_c PF02518.26 gi|336254126|ref|YP_004597233.1| - 2e-13 50.8 0.5 7.9e-13 48.9 0.0 2.2 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 gi|336254126|ref|YP_004597233.1| - 2.7e-12 46.7 0.0 9.7e-12 44.9 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|336254126|ref|YP_004597233.1| - 0.02 14.9 2.7 0.11 12.4 0.0 3.3 3 1 0 3 3 3 0 Histidine kinase-like ATPase domain TP6A_N PF04406.14 gi|336254127|ref|YP_004597234.1| - 3.5e-15 55.7 0.1 6.5e-15 54.9 0.1 1.5 1 0 0 1 1 1 1 Type IIB DNA topoisomerase cpYpsA PF12694.7 gi|336254127|ref|YP_004597234.1| - 0.0069 16.2 0.0 0.012 15.4 0.0 1.3 1 0 0 1 1 1 1 Circularly permutated YpsA SLOG family zf_Rg PF17915.1 gi|336254128|ref|YP_004597235.1| - 0.058 12.8 0.1 0.082 12.3 0.1 1.3 1 0 0 1 1 1 0 Reverse gyrase zinc finger zinc_ribbon_2 PF13240.6 gi|336254129|ref|YP_004597236.1| - 5.5e-07 29.1 3.3 5.5e-07 29.1 3.3 2.7 3 0 0 3 3 3 1 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|336254129|ref|YP_004597236.1| - 4.7e-05 22.6 2.6 4.7e-05 22.6 2.6 2.5 2 0 0 2 2 2 1 zinc-ribbon domain DZR PF12773.7 gi|336254129|ref|YP_004597236.1| - 0.00034 20.6 0.8 0.00034 20.6 0.8 2.7 2 1 0 2 2 2 1 Double zinc ribbon DUF35_N PF12172.8 gi|336254129|ref|YP_004597236.1| - 0.00065 19.5 2.6 0.002 18.0 2.6 1.9 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) Nudix_N_2 PF14803.6 gi|336254129|ref|YP_004597236.1| - 0.00085 19.2 10.9 0.34 10.9 0.1 4.4 4 0 0 4 4 4 2 Nudix N-terminal zinc_ribbon_15 PF17032.5 gi|336254129|ref|YP_004597236.1| - 0.0012 19.6 1.5 0.0012 19.6 1.5 2.4 2 1 0 2 2 2 1 zinc-ribbon family zf-NADH-PPase PF09297.11 gi|336254129|ref|YP_004597236.1| - 0.015 14.9 7.1 1.4 8.7 0.3 3.7 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain Apt1 PF10351.9 gi|336254129|ref|YP_004597236.1| - 0.035 13.0 0.5 0.055 12.3 0.5 1.3 1 0 0 1 1 1 0 Golgi-body localisation protein domain DUF2321 PF10083.9 gi|336254129|ref|YP_004597236.1| - 0.11 12.2 1.4 0.15 11.7 0.1 1.8 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2321) zinc-ribbons_6 PF07191.12 gi|336254129|ref|YP_004597236.1| - 0.26 11.3 0.2 0.26 11.3 0.2 2.4 2 1 0 2 2 2 0 zinc-ribbons Prok-RING_1 PF14446.6 gi|336254129|ref|YP_004597236.1| - 0.3 11.0 2.4 0.57 10.2 0.6 2.2 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 C1_1 PF00130.22 gi|336254129|ref|YP_004597236.1| - 0.53 10.2 3.7 1.3 9.0 0.2 2.6 2 1 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DUF1272 PF06906.11 gi|336254129|ref|YP_004597236.1| - 0.57 10.3 5.6 0.5 10.5 1.9 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1272) DHHC PF01529.20 gi|336254129|ref|YP_004597236.1| - 1.2 9.3 3.8 1.2 9.2 0.3 2.5 3 0 0 3 3 3 0 DHHC palmitoyltransferase C1_2 PF03107.16 gi|336254129|ref|YP_004597236.1| - 1.5 9.2 6.6 32 4.9 0.8 3.2 3 0 0 3 3 3 0 C1 domain Zn_ribbon_SprT PF17283.2 gi|336254129|ref|YP_004597236.1| - 1.5 8.8 10.1 9.1 6.3 0.1 3.8 3 1 0 3 3 3 0 SprT-like zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|336254129|ref|YP_004597236.1| - 4.1 7.0 5.8 16 5.1 2.1 3.1 2 1 1 3 3 3 0 TFIIB zinc-binding zf-C3HC4_3 PF13920.6 gi|336254129|ref|YP_004597236.1| - 8.5 6.3 11.5 0.61 10.0 1.4 2.9 2 1 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) Lactamase_B_3 PF13483.6 gi|336254130|ref|YP_004597237.1| - 4.3e-32 111.3 0.0 5.8e-32 110.8 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|336254130|ref|YP_004597237.1| - 9.1e-09 35.1 0.3 1.3e-08 34.7 0.3 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain TFIIB PF00382.19 gi|336254131|ref|YP_004597238.1| - 2e-38 130.3 0.1 7.6e-20 70.7 0.0 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|336254131|ref|YP_004597238.1| - 4.1e-17 61.4 3.3 8.4e-17 60.4 3.3 1.6 1 0 0 1 1 1 1 TFIIB zinc-binding Cyclin_C PF02984.19 gi|336254131|ref|YP_004597238.1| - 0.00095 19.2 0.0 0.02 15.0 0.0 2.2 2 0 0 2 2 2 1 Cyclin, C-terminal domain OrfB_Zn_ribbon PF07282.11 gi|336254131|ref|YP_004597238.1| - 0.013 15.4 0.9 0.032 14.1 0.9 1.6 2 0 0 2 2 1 0 Putative transposase DNA-binding domain DZR PF12773.7 gi|336254131|ref|YP_004597238.1| - 0.02 14.9 0.8 0.034 14.2 0.8 1.3 1 0 0 1 1 1 0 Double zinc ribbon YopD PF05844.12 gi|336254131|ref|YP_004597238.1| - 0.046 12.7 0.2 0.082 11.9 0.2 1.3 1 0 0 1 1 1 0 YopD protein Sigma70_r4 PF04545.16 gi|336254131|ref|YP_004597238.1| - 0.05 13.1 4.5 0.1 12.2 0.1 3.2 4 0 0 4 4 4 0 Sigma-70, region 4 Zn-ribbon_8 PF09723.10 gi|336254131|ref|YP_004597238.1| - 0.19 11.8 6.1 0.99 9.6 1.2 2.4 1 1 1 2 2 2 0 Zinc ribbon domain Auto_anti-p27 PF06677.12 gi|336254131|ref|YP_004597238.1| - 0.39 10.9 1.2 0.78 9.9 1.2 1.5 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DNA_ligase_ZBD PF03119.16 gi|336254131|ref|YP_004597238.1| - 0.43 10.6 2.9 1.4 9.1 2.9 2.0 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain zf_UBZ PF18439.1 gi|336254131|ref|YP_004597238.1| - 0.87 9.2 3.3 8.5 6.1 0.2 2.4 1 1 1 2 2 2 0 Ubiquitin-Binding Zinc Finger A2L_zn_ribbon PF08792.10 gi|336254131|ref|YP_004597238.1| - 0.98 9.2 2.4 4.8 7.0 2.4 1.9 1 1 0 1 1 1 0 A2L zinc ribbon domain Lar_restr_allev PF14354.6 gi|336254131|ref|YP_004597238.1| - 1.1 9.6 4.4 0.37 11.2 1.0 2.0 2 0 0 2 2 1 0 Restriction alleviation protein Lar zf-ribbon_3 PF13248.6 gi|336254131|ref|YP_004597238.1| - 1.2 8.6 3.0 12 5.5 3.0 2.1 1 1 0 1 1 1 0 zinc-ribbon domain zf-C4_Topoisom PF01396.19 gi|336254131|ref|YP_004597238.1| - 1.8 8.4 3.7 0.49 10.2 0.4 1.7 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger PhnA_Zn_Ribbon PF08274.12 gi|336254132|ref|YP_004597239.1| - 0.0025 17.7 3.5 0.21 11.5 0.3 2.1 2 0 0 2 2 2 2 PhnA Zinc-Ribbon zinc_ribbon_4 PF13717.6 gi|336254132|ref|YP_004597239.1| - 0.0035 17.2 6.3 0.027 14.4 1.7 1.9 1 1 2 3 3 3 2 zinc-ribbon domain Zn_Tnp_IS1 PF03811.13 gi|336254132|ref|YP_004597239.1| - 0.0042 16.8 0.7 0.71 9.6 0.2 2.2 2 0 0 2 2 2 1 InsA N-terminal domain TF_Zn_Ribbon PF08271.12 gi|336254132|ref|YP_004597239.1| - 0.0053 16.2 0.6 0.81 9.3 0.1 2.1 2 0 0 2 2 2 1 TFIIB zinc-binding zinc_ribbon_10 PF10058.9 gi|336254132|ref|YP_004597239.1| - 0.0061 16.3 0.1 0.0073 16.0 0.1 1.2 1 0 0 1 1 1 1 Predicted integral membrane zinc-ribbon metal-binding protein HypA PF01155.19 gi|336254132|ref|YP_004597239.1| - 0.0072 16.3 0.3 0.0077 16.2 0.3 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF1610 PF07754.11 gi|336254132|ref|YP_004597239.1| - 0.015 15.2 2.9 1.1 9.3 1.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) NMD3 PF04981.13 gi|336254132|ref|YP_004597239.1| - 0.025 14.1 0.2 0.025 14.1 0.2 1.0 1 0 0 1 1 1 0 NMD3 family RNHCP PF12647.7 gi|336254132|ref|YP_004597239.1| - 0.026 14.5 0.3 0.031 14.3 0.3 1.2 1 0 0 1 1 1 0 RNHCP domain Stc1 PF12898.7 gi|336254132|ref|YP_004597239.1| - 0.036 14.6 0.4 0.046 14.3 0.4 1.2 1 0 0 1 1 1 0 Stc1 domain TFIIS_C PF01096.18 gi|336254132|ref|YP_004597239.1| - 0.04 13.8 1.8 2.8 7.8 0.2 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DZR PF12773.7 gi|336254132|ref|YP_004597239.1| - 0.047 13.7 2.2 0.077 13.0 2.2 1.3 1 1 0 1 1 1 0 Double zinc ribbon zinc-ribbons_6 PF07191.12 gi|336254132|ref|YP_004597239.1| - 0.047 13.7 2.0 0.17 11.9 1.8 1.8 1 1 1 2 2 2 0 zinc-ribbons zf-CHY PF05495.12 gi|336254132|ref|YP_004597239.1| - 0.062 13.8 2.5 0.17 12.4 0.3 1.9 1 1 1 2 2 2 0 CHY zinc finger HscB_4_cys PF18256.1 gi|336254132|ref|YP_004597239.1| - 0.067 13.0 1.7 0.5 10.2 0.2 2.2 2 0 0 2 2 2 0 Co-chaperone HscB tetracysteine metal binding motif CpXC PF14353.6 gi|336254132|ref|YP_004597239.1| - 0.081 13.0 0.4 1.2 9.2 0.0 2.0 2 0 0 2 2 2 0 CpXC protein HalOD2 PF18547.1 gi|336254132|ref|YP_004597239.1| - 0.2 11.6 2.1 2.9 7.8 2.1 2.1 1 1 0 1 1 1 0 Halobacterial output domain 2 Rubredoxin PF00301.20 gi|336254132|ref|YP_004597239.1| - 0.27 11.3 4.8 0.38 10.8 0.2 2.1 1 1 1 2 2 2 0 Rubredoxin zf_Rg PF17915.1 gi|336254132|ref|YP_004597239.1| - 0.35 10.3 3.2 17 4.9 1.8 2.4 2 1 0 2 2 2 0 Reverse gyrase zinc finger Zn_Tnp_IS1595 PF12760.7 gi|336254132|ref|YP_004597239.1| - 0.43 10.6 4.8 0.52 10.3 0.6 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain UPF0058 PF01893.16 gi|336254133|ref|YP_004597240.1| - 5.6e-21 74.6 0.0 5.9e-21 74.5 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 NinB PF05772.12 gi|336254133|ref|YP_004597240.1| - 0.048 13.5 0.0 0.052 13.4 0.0 1.1 1 0 0 1 1 1 0 NinB protein DUF555 PF04475.12 gi|336254134|ref|YP_004597241.1| - 1.3e-37 128.2 0.2 1.8e-37 127.7 0.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF555) CNDH2_C PF16858.5 gi|336254134|ref|YP_004597241.1| - 0.04 13.8 5.1 0.041 13.8 5.1 1.1 1 0 0 1 1 1 0 Condensin II complex subunit CAP-H2 or CNDH2, C-term Cwf_Cwc_15 PF04889.12 gi|336254134|ref|YP_004597241.1| - 0.24 11.1 15.4 0.33 10.6 15.4 1.2 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein DUF2076 PF09849.9 gi|336254134|ref|YP_004597241.1| - 0.38 10.8 5.3 0.45 10.5 5.3 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2076) SDA1 PF05285.12 gi|336254134|ref|YP_004597241.1| - 8 5.8 17.3 10 5.5 17.3 1.1 1 0 0 1 1 1 0 SDA1 Nop14 PF04147.12 gi|336254134|ref|YP_004597241.1| - 8.1 4.5 19.3 9.7 4.3 19.3 1.0 1 0 0 1 1 1 0 Nop14-like family HhH-GPD PF00730.25 gi|336254135|ref|YP_004597242.1| - 3.7e-15 56.3 0.0 1.2e-14 54.6 0.0 1.8 2 0 0 2 2 2 1 HhH-GPD superfamily base excision DNA repair protein OGG_N PF07934.12 gi|336254135|ref|YP_004597242.1| - 1.7e-06 28.1 0.0 6.8e-06 26.2 0.0 1.8 1 1 0 1 1 1 1 8-oxoguanine DNA glycosylase, N-terminal domain AlkA_N PF06029.11 gi|336254135|ref|YP_004597242.1| - 0.038 14.3 0.1 0.14 12.5 0.1 1.9 2 0 0 2 2 2 0 AlkA N-terminal domain DUF3784 PF12650.7 gi|336254136|ref|YP_004597243.1| - 2.3e-05 24.5 0.1 3.1e-05 24.1 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF3784) FUSC_2 PF13515.6 gi|336254137|ref|YP_004597244.1| - 0.0069 16.5 4.3 0.0088 16.2 4.3 1.0 1 0 0 1 1 1 1 Fusaric acid resistance protein-like Acylphosphatase PF00708.18 gi|336254139|ref|YP_004597246.1| - 1.3e-25 89.6 0.1 1.5e-25 89.4 0.1 1.0 1 0 0 1 1 1 1 Acylphosphatase Acyl_transf_1 PF00698.21 gi|336254139|ref|YP_004597246.1| - 0.068 12.7 0.1 0.079 12.5 0.1 1.0 1 0 0 1 1 1 0 Acyl transferase domain Carb_kinase PF01256.17 gi|336254141|ref|YP_004597248.1| - 1.2e-41 142.8 1.9 1.9e-41 142.1 1.9 1.3 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.15 gi|336254141|ref|YP_004597248.1| - 1.3e-39 135.8 0.7 2.6e-39 134.9 0.7 1.5 1 0 0 1 1 1 1 YjeF-related protein N-terminus HK PF02110.15 gi|336254141|ref|YP_004597248.1| - 5.7e-08 32.4 0.1 1e-07 31.6 0.1 1.5 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Phos_pyr_kin PF08543.12 gi|336254141|ref|YP_004597248.1| - 8.4e-08 31.9 0.1 2.1e-07 30.6 0.2 1.6 2 0 0 2 2 2 1 Phosphomethylpyrimidine kinase MoaC PF01967.21 gi|336254142|ref|YP_004597249.1| - 1.4e-48 164.4 0.4 1.7e-48 164.2 0.4 1.0 1 0 0 1 1 1 1 MoaC family NMO PF03060.15 gi|336254143|ref|YP_004597250.1| - 2.6e-64 217.7 3.1 5.5e-63 213.3 3.1 2.0 1 1 0 1 1 1 1 Nitronate monooxygenase FMN_dh PF01070.18 gi|336254143|ref|YP_004597250.1| - 5e-09 35.6 8.8 5e-09 35.6 8.8 1.5 2 0 0 2 2 2 1 FMN-dependent dehydrogenase IMPDH PF00478.25 gi|336254143|ref|YP_004597250.1| - 6.8e-09 35.2 6.6 6e-08 32.1 6.6 2.1 1 1 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain His_biosynth PF00977.21 gi|336254143|ref|YP_004597250.1| - 0.013 14.9 0.6 0.028 13.9 0.6 1.5 1 0 0 1 1 1 0 Histidine biosynthesis protein DHO_dh PF01180.21 gi|336254143|ref|YP_004597250.1| - 0.078 12.2 0.9 0.13 11.4 0.9 1.3 1 0 0 1 1 1 0 Dihydroorotate dehydrogenase Glu_synthase PF01645.17 gi|336254143|ref|YP_004597250.1| - 0.13 11.4 2.8 0.23 10.6 2.8 1.5 1 1 0 1 1 1 0 Conserved region in glutamate synthase Lar_restr_allev PF14354.6 gi|336254144|ref|YP_004597251.1| - 0.00052 20.3 5.0 0.003 17.9 0.2 2.8 2 1 0 2 2 2 1 Restriction alleviation protein Lar HTH_20 PF12840.7 gi|336254144|ref|YP_004597251.1| - 0.0043 17.1 0.0 0.0093 16.0 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Elf1 PF05129.13 gi|336254144|ref|YP_004597251.1| - 0.0068 16.4 0.1 1.7 8.7 0.0 2.4 2 0 0 2 2 2 2 Transcription elongation factor Elf1 like Zn_Tnp_IS1595 PF12760.7 gi|336254144|ref|YP_004597251.1| - 3.2 7.8 5.0 17 5.5 0.5 2.7 2 1 0 2 2 2 0 Transposase zinc-ribbon domain DUF1272 PF06906.11 gi|336254144|ref|YP_004597251.1| - 5.5 7.2 9.5 1.5 8.9 0.2 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF1272) CpXC PF14353.6 gi|336254144|ref|YP_004597251.1| - 6.7 6.8 5.6 3.2 7.8 0.9 2.7 2 1 1 3 3 3 0 CpXC protein Zn-ribbon_8 PF09723.10 gi|336254144|ref|YP_004597251.1| - 7.4 6.8 10.9 12 6.1 0.0 3.6 3 1 0 3 3 3 0 Zinc ribbon domain zf-TFIIB PF13453.6 gi|336254144|ref|YP_004597251.1| - 7.6 6.0 7.7 7 6.1 1.5 2.7 2 0 0 2 2 2 0 Transcription factor zinc-finger zf-Mss51 PF13824.6 gi|336254144|ref|YP_004597251.1| - 8.9 6.5 7.4 5.6 7.2 0.2 3.0 3 0 0 3 3 3 0 Zinc-finger of mitochondrial splicing suppressor 51 Proteasome PF00227.26 gi|336254145|ref|YP_004597252.1| - 3.7e-53 179.9 0.0 4.5e-53 179.6 0.0 1.1 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.9 gi|336254145|ref|YP_004597252.1| - 3.5e-12 45.8 0.1 5.6e-12 45.1 0.1 1.3 1 0 0 1 1 1 1 Proteasome subunit A N-terminal signature Proteasome PF00227.26 gi|336254146|ref|YP_004597253.1| - 1.8e-41 141.8 0.4 2.1e-41 141.5 0.4 1.1 1 0 0 1 1 1 1 Proteasome subunit YvrJ PF12841.7 gi|336254147|ref|YP_004597254.1| - 0.066 12.8 0.3 0.17 11.5 0.3 1.6 1 0 0 1 1 1 0 YvrJ protein family TatC PF00902.18 gi|336254147|ref|YP_004597254.1| - 0.11 12.3 0.9 0.11 12.3 0.9 2.0 2 0 0 2 2 2 0 Sec-independent protein translocase protein (TatC) DUF2207 PF09972.9 gi|336254147|ref|YP_004597254.1| - 2.9 6.6 5.6 2 7.1 0.2 2.0 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) adh_short_C2 PF13561.6 gi|336254148|ref|YP_004597255.1| - 7.2e-65 218.8 2.2 8.1e-65 218.6 2.2 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|336254148|ref|YP_004597255.1| - 1.1e-57 194.6 0.8 1.3e-57 194.4 0.8 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|336254148|ref|YP_004597255.1| - 1.2e-21 77.4 0.2 1.6e-21 77.1 0.2 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|336254148|ref|YP_004597255.1| - 0.0038 16.7 0.1 0.0057 16.1 0.1 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Sacchrp_dh_NADP PF03435.18 gi|336254148|ref|YP_004597255.1| - 0.022 15.0 0.0 0.042 14.1 0.0 1.4 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain Abhydrolase_1 PF00561.20 gi|336254149|ref|YP_004597256.1| - 1.4e-24 87.2 0.0 2e-24 86.6 0.0 1.2 1 0 0 1 1 1 1 alpha/beta hydrolase fold PhaC_N PF07167.13 gi|336254149|ref|YP_004597256.1| - 4.7e-14 52.4 0.1 7.7e-14 51.7 0.1 1.3 1 0 0 1 1 1 1 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus HHH_5 PF14520.6 gi|336254149|ref|YP_004597256.1| - 2.8e-11 43.9 0.0 7.5e-11 42.5 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix domain Hydrolase_4 PF12146.8 gi|336254149|ref|YP_004597256.1| - 9.7e-09 34.8 0.0 7.4e-05 22.1 0.0 2.5 2 0 0 2 2 2 2 Serine aminopeptidase, S33 DUF3141 PF11339.8 gi|336254149|ref|YP_004597256.1| - 7.8e-07 27.9 0.0 4.5e-06 25.4 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF3141) DLH PF01738.18 gi|336254149|ref|YP_004597256.1| - 1.3e-05 24.8 0.0 0.0028 17.2 0.0 2.5 2 0 0 2 2 2 1 Dienelactone hydrolase family DUF4332 PF14229.6 gi|336254149|ref|YP_004597256.1| - 9.4e-05 22.6 0.5 0.001 19.3 0.5 2.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4332) PHB_depo_C PF06850.11 gi|336254149|ref|YP_004597256.1| - 0.00018 21.0 0.1 0.00051 19.6 0.0 1.8 2 0 0 2 2 2 1 PHB de-polymerase C-terminus Abhydrolase_6 PF12697.7 gi|336254149|ref|YP_004597256.1| - 0.00074 20.2 0.1 0.0015 19.2 0.1 1.5 1 0 0 1 1 1 1 Alpha/beta hydrolase family Cdd1 PF11731.8 gi|336254149|ref|YP_004597256.1| - 0.002 18.3 0.0 0.0044 17.2 0.0 1.6 1 0 0 1 1 1 1 Pathogenicity locus DNA_pol_lambd_f PF10391.9 gi|336254149|ref|YP_004597256.1| - 0.0025 17.6 0.0 0.0059 16.4 0.0 1.6 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda Homez PF11569.8 gi|336254149|ref|YP_004597256.1| - 0.071 12.6 0.2 0.49 9.9 0.0 2.2 2 0 0 2 2 2 0 Homeodomain leucine-zipper encoding, Homez FSH1 PF03959.13 gi|336254149|ref|YP_004597256.1| - 0.076 12.7 0.0 8 6.0 0.0 2.3 2 0 0 2 2 2 0 Serine hydrolase (FSH1) HHH PF00633.23 gi|336254149|ref|YP_004597256.1| - 0.16 11.9 0.3 0.82 9.7 0.0 2.4 2 0 0 2 2 2 0 Helix-hairpin-helix motif PHA_synth_III_E PF09712.10 gi|336254150|ref|YP_004597257.1| - 1.1e-06 28.0 12.0 1.6e-05 24.2 0.3 2.1 1 1 1 2 2 2 2 Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E) XFP PF03894.15 gi|336254150|ref|YP_004597257.1| - 0.0064 16.2 0.3 0.012 15.4 0.3 1.4 1 0 0 1 1 1 1 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase BAR_3 PF16746.5 gi|336254150|ref|YP_004597257.1| - 0.028 14.2 0.3 0.06 13.0 0.2 1.7 1 1 0 1 1 1 0 BAR domain of APPL family Mt_ATP-synt_D PF05873.12 gi|336254150|ref|YP_004597257.1| - 0.031 14.1 1.9 0.061 13.2 1.7 1.7 1 1 0 1 1 1 0 ATP synthase D chain, mitochondrial (ATP5H) Phasin PF05597.11 gi|336254150|ref|YP_004597257.1| - 0.048 13.7 6.8 0.23 11.4 3.9 2.4 1 1 1 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) COG2 PF06148.11 gi|336254150|ref|YP_004597257.1| - 0.065 13.3 5.2 3.2 7.8 0.2 2.8 1 1 2 3 3 3 0 COG (conserved oligomeric Golgi) complex component, COG2 Hs1pro-1_C PF07014.12 gi|336254150|ref|YP_004597257.1| - 0.079 12.4 0.6 0.15 11.5 0.6 1.8 1 1 0 1 1 1 0 Hs1pro-1 protein C-terminus QIL1 PF15884.5 gi|336254150|ref|YP_004597257.1| - 0.1 13.2 0.3 23 5.7 0.1 2.4 2 0 0 2 2 2 0 MICOS complex subunit MIC13, QIL1 5_nucleotid_C PF02872.18 gi|336254150|ref|YP_004597257.1| - 0.1 12.8 0.1 0.28 11.4 0.0 1.6 1 1 0 2 2 2 0 5'-nucleotidase, C-terminal domain Mating_N PF12731.7 gi|336254150|ref|YP_004597257.1| - 0.13 12.4 3.6 0.27 11.4 1.0 2.6 2 2 1 3 3 3 0 Mating-type protein beta 1 DUF948 PF06103.11 gi|336254150|ref|YP_004597257.1| - 0.2 11.9 4.4 12 6.3 0.6 3.1 1 1 2 3 3 3 0 Bacterial protein of unknown function (DUF948) DUF5344 PF17279.2 gi|336254150|ref|YP_004597257.1| - 0.36 11.4 6.5 10 6.8 0.2 3.3 2 2 1 3 3 3 0 Family of unknown function (DUF5344) Laminin_II PF06009.12 gi|336254150|ref|YP_004597257.1| - 0.92 9.5 5.0 4 7.4 0.7 2.4 1 1 2 3 3 3 0 Laminin Domain II Phasin_2 PF09361.10 gi|336254150|ref|YP_004597257.1| - 1.5 9.1 10.8 2.5 8.4 1.6 3.0 1 1 0 2 2 2 0 Phasin protein DUF4795 PF16043.5 gi|336254151|ref|YP_004597258.1| - 0.0024 17.5 0.5 0.0038 16.8 0.5 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4795) ApoLp-III PF07464.11 gi|336254151|ref|YP_004597258.1| - 0.0026 17.8 3.6 0.0066 16.6 1.1 2.0 1 1 1 2 2 2 2 Apolipophorin-III precursor (apoLp-III) ADH_zinc_N_2 PF13602.6 gi|336254151|ref|YP_004597258.1| - 0.0062 17.6 2.1 0.067 14.3 0.2 2.1 2 0 0 2 2 2 1 Zinc-binding dehydrogenase DUF148 PF02520.17 gi|336254151|ref|YP_004597258.1| - 0.011 15.8 3.1 2.2 8.4 3.4 2.3 1 1 1 2 2 2 0 Domain of unknown function DUF148 YkyA PF10368.9 gi|336254151|ref|YP_004597258.1| - 0.012 15.3 6.7 0.093 12.4 6.7 2.3 1 1 0 1 1 1 0 Putative cell-wall binding lipoprotein Apolipoprotein PF01442.18 gi|336254151|ref|YP_004597258.1| - 0.017 15.0 10.4 0.089 12.7 10.5 1.9 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain Phasin_2 PF09361.10 gi|336254151|ref|YP_004597258.1| - 0.026 14.8 16.3 1.5 9.2 2.0 3.0 1 1 0 2 2 2 0 Phasin protein DUF1664 PF07889.12 gi|336254151|ref|YP_004597258.1| - 0.041 13.9 1.3 0.18 11.8 1.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) BMFP PF04380.13 gi|336254151|ref|YP_004597258.1| - 0.073 13.6 5.4 4.3 7.9 0.1 3.3 3 0 0 3 3 3 0 Membrane fusogenic activity DUF885 PF05960.11 gi|336254151|ref|YP_004597258.1| - 0.12 12.0 5.7 0.14 11.8 5.7 1.0 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF885) DUF2959 PF11172.8 gi|336254151|ref|YP_004597258.1| - 0.15 12.2 9.1 0.34 11.0 5.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2959) CorA PF01544.18 gi|336254151|ref|YP_004597258.1| - 0.19 11.0 1.2 0.25 10.6 1.2 1.1 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein DUF5344 PF17279.2 gi|336254151|ref|YP_004597258.1| - 0.2 12.3 4.9 0.3 11.7 1.7 2.6 2 2 1 3 3 3 0 Family of unknown function (DUF5344) CAP_N PF01213.19 gi|336254151|ref|YP_004597258.1| - 0.46 9.9 6.6 1.1 8.7 6.6 1.7 1 1 0 1 1 1 0 Adenylate cyclase associated (CAP) N terminal Cdh1_DBD_1 PF18196.1 gi|336254151|ref|YP_004597258.1| - 0.52 10.6 4.1 6 7.2 0.9 2.6 1 1 2 3 3 3 0 Chromodomain helicase DNA-binding domain 1 Phasin PF05597.11 gi|336254151|ref|YP_004597258.1| - 1 9.3 7.5 17 5.4 1.4 2.8 1 1 1 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) TBCC_N PF16752.5 gi|336254151|ref|YP_004597258.1| - 1.8 9.0 7.2 0.96 9.9 1.4 2.3 1 1 0 2 2 2 0 Tubulin-specific chaperone C N-terminal domain MazE_antitoxin PF04014.18 gi|336254152|ref|YP_004597259.1| - 0.049 13.6 0.7 0.073 13.0 0.7 1.2 1 0 0 1 1 1 0 Antidote-toxin recognition MazE, bacterial antitoxin MaoC_dehydratas PF01575.19 gi|336254153|ref|YP_004597260.1| - 3.2e-23 81.6 0.0 8.8e-23 80.2 0.0 1.6 2 0 0 2 2 2 1 MaoC like domain MaoC_dehydrat_N PF13452.6 gi|336254153|ref|YP_004597260.1| - 1.6e-07 31.5 0.0 6.2e-07 29.6 0.0 2.0 1 1 1 2 2 2 1 N-terminal half of MaoC dehydratase 4HBT PF03061.22 gi|336254153|ref|YP_004597260.1| - 0.0014 18.9 0.1 0.0071 16.7 0.0 2.3 3 0 0 3 3 3 1 Thioesterase superfamily 4HBT_2 PF13279.6 gi|336254153|ref|YP_004597260.1| - 0.005 17.3 0.0 0.011 16.3 0.0 1.4 1 1 0 1 1 1 1 Thioesterase-like superfamily PGM_PMM_I PF02878.16 gi|336254154|ref|YP_004597261.1| - 1e-31 109.5 0.1 6.3e-31 106.9 0.0 2.1 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|336254154|ref|YP_004597261.1| - 3.5e-17 62.9 0.1 9.4e-17 61.5 0.1 1.8 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.20 gi|336254154|ref|YP_004597261.1| - 1e-10 41.6 0.0 4.2e-10 39.6 0.0 2.1 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain PGM_PMM_III PF02880.16 gi|336254154|ref|YP_004597261.1| - 0.00038 20.6 0.1 0.001 19.3 0.1 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Bmp PF02608.14 gi|336254155|ref|YP_004597262.1| - 5.2e-58 196.4 5.8 7.6e-58 195.9 5.8 1.2 1 0 0 1 1 1 1 ABC transporter substrate-binding protein PnrA-like Peripla_BP_4 PF13407.6 gi|336254155|ref|YP_004597262.1| - 1.6e-05 24.6 9.4 4.5e-05 23.2 9.4 1.7 1 1 0 1 1 1 1 Periplasmic binding protein domain TAT_signal PF10518.9 gi|336254155|ref|YP_004597262.1| - 0.14 12.1 2.8 0.31 11.0 2.8 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence ABC_tran PF00005.27 gi|336254156|ref|YP_004597263.1| - 1.2e-47 161.9 0.0 1.4e-30 106.6 0.0 2.3 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|336254156|ref|YP_004597263.1| - 1.8e-09 37.8 0.0 0.00017 21.5 0.0 2.3 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|336254156|ref|YP_004597263.1| - 0.00026 20.7 0.1 0.027 14.2 0.0 2.7 3 0 0 3 3 3 1 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|336254156|ref|YP_004597263.1| - 0.0015 18.3 0.2 0.011 15.5 0.2 2.1 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|336254156|ref|YP_004597263.1| - 0.0089 15.9 0.0 0.08 12.8 0.0 2.4 3 0 0 3 3 3 1 RsgA GTPase AAA_22 PF13401.6 gi|336254156|ref|YP_004597263.1| - 0.0097 16.2 0.1 3.2 8.0 0.0 2.5 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.19 gi|336254156|ref|YP_004597263.1| - 0.011 15.2 0.1 4.1 6.8 0.0 2.7 3 0 0 3 3 3 0 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|336254156|ref|YP_004597263.1| - 0.017 15.6 0.0 0.032 14.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|336254156|ref|YP_004597263.1| - 0.021 14.5 0.0 1.1 8.9 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain AAA_16 PF13191.6 gi|336254156|ref|YP_004597263.1| - 0.034 14.5 0.0 0.12 12.8 0.0 1.9 1 1 0 1 1 1 0 AAA ATPase domain MMR_HSR1 PF01926.23 gi|336254156|ref|YP_004597263.1| - 0.048 13.8 0.0 0.17 12.0 0.0 2.2 2 1 0 2 2 2 0 50S ribosome-binding GTPase AAA_27 PF13514.6 gi|336254156|ref|YP_004597263.1| - 0.096 12.3 0.0 0.18 11.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain DLIC PF05783.11 gi|336254156|ref|YP_004597263.1| - 0.13 11.1 1.9 0.16 10.8 0.0 2.0 3 0 0 3 3 3 0 Dynein light intermediate chain (DLIC) BPD_transp_2 PF02653.16 gi|336254157|ref|YP_004597264.1| - 6.7e-45 153.3 30.4 6.7e-45 153.3 30.4 2.0 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component DUF1269 PF06897.12 gi|336254157|ref|YP_004597264.1| - 8.9 6.7 12.1 0.19 12.0 4.4 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1269) BPD_transp_2 PF02653.16 gi|336254158|ref|YP_004597265.1| - 9.5e-34 116.8 31.7 9.5e-34 116.8 31.7 1.5 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component dCMP_cyt_deam_1 PF00383.23 gi|336254159|ref|YP_004597266.1| - 4.5e-17 61.8 0.2 5.6e-17 61.5 0.2 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region dCMP_cyt_deam_2 PF08211.12 gi|336254159|ref|YP_004597266.1| - 4.8e-11 43.0 1.3 6.4e-11 42.6 1.3 1.2 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region HTH_10 PF04967.12 gi|336254159|ref|YP_004597266.1| - 0.12 12.1 0.0 0.26 11.1 0.0 1.6 1 0 0 1 1 1 0 HTH DNA binding domain DUF488 PF04343.13 gi|336254160|ref|YP_004597267.1| - 1.6e-09 38.4 0.7 4e-09 37.1 0.7 1.8 1 1 0 1 1 1 1 Protein of unknown function, DUF488 PNP_UDP_1 PF01048.20 gi|336254161|ref|YP_004597268.1| - 6.3e-47 159.8 1.9 7.7e-47 159.5 1.9 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily DAO_C PF16901.5 gi|336254161|ref|YP_004597268.1| - 0.0037 17.1 0.1 0.0064 16.4 0.1 1.4 1 0 0 1 1 1 1 C-terminal domain of alpha-glycerophosphate oxidase MS_channel PF00924.18 gi|336254162|ref|YP_004597269.1| - 7.5e-17 61.6 0.8 7.5e-17 61.6 0.8 1.7 2 0 0 2 2 2 1 Mechanosensitive ion channel TM_helix PF05552.12 gi|336254162|ref|YP_004597269.1| - 2.4e-07 30.6 15.1 3.9e-07 29.9 0.1 3.2 3 0 0 3 3 3 2 Conserved TM helix DisA_N PF02457.16 gi|336254163|ref|YP_004597270.1| - 6.6e-21 74.1 0.0 1e-20 73.5 0.0 1.3 1 0 0 1 1 1 1 DisA bacterial checkpoint controller nucleotide-binding PK_C PF02887.16 gi|336254163|ref|YP_004597270.1| - 0.061 13.6 0.0 0.37 11.0 0.0 2.3 1 1 1 2 2 2 0 Pyruvate kinase, alpha/beta domain Abhydrolase_6 PF12697.7 gi|336254164|ref|YP_004597271.1| - 4.9e-23 82.9 6.4 5.9e-23 82.6 6.4 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|336254164|ref|YP_004597271.1| - 8.8e-19 68.1 0.0 1.6e-14 54.2 0.1 2.1 2 0 0 2 2 2 2 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|336254164|ref|YP_004597271.1| - 4.8e-12 45.7 0.1 6.2e-11 42.0 0.1 2.0 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Ndr PF03096.14 gi|336254164|ref|YP_004597271.1| - 0.21 10.2 0.0 7.4 5.2 0.0 2.0 2 0 0 2 2 2 0 Ndr family Xan_ur_permease PF00860.20 gi|336254165|ref|YP_004597272.1| - 2.5e-79 266.8 37.5 5.2e-79 265.7 37.5 1.5 1 1 0 1 1 1 1 Permease family AAA_lid_2 PF17863.1 gi|336254166|ref|YP_004597273.1| - 1.1e-20 73.2 3.7 2.9e-20 71.9 0.3 3.0 2 0 0 2 2 2 1 AAA lid domain VWA_2 PF13519.6 gi|336254166|ref|YP_004597273.1| - 1.1e-12 48.5 0.0 2.2e-12 47.6 0.0 1.5 1 0 0 1 1 1 1 von Willebrand factor type A domain Mg_chelatase PF01078.21 gi|336254166|ref|YP_004597273.1| - 7.9e-12 45.0 0.0 4.2e-09 36.1 0.0 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI VWA PF00092.28 gi|336254166|ref|YP_004597273.1| - 1.6e-10 41.5 0.0 2.6e-10 40.8 0.0 1.3 1 0 0 1 1 1 1 von Willebrand factor type A domain AAA_5 PF07728.14 gi|336254166|ref|YP_004597273.1| - 1.3e-07 31.7 0.0 5.9e-05 23.1 0.0 2.5 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) VWA_CoxE PF05762.14 gi|336254166|ref|YP_004597273.1| - 2.8e-06 26.9 6.8 4.8e-06 26.1 6.8 1.3 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein MCM PF00493.23 gi|336254166|ref|YP_004597273.1| - 1.2e-05 24.5 0.0 8.9e-05 21.7 0.0 2.2 2 1 0 2 2 2 1 MCM P-loop domain adh_short_C2 PF13561.6 gi|336254166|ref|YP_004597273.1| - 0.01 15.4 0.9 0.02 14.5 0.9 1.5 1 0 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase VWA_3 PF13768.6 gi|336254166|ref|YP_004597273.1| - 0.018 15.0 0.1 0.035 14.1 0.1 1.4 1 0 0 1 1 1 0 von Willebrand factor type A domain Sigma54_activat PF00158.26 gi|336254166|ref|YP_004597273.1| - 0.019 14.6 0.0 0.23 11.1 0.0 2.1 2 0 0 2 2 2 0 Sigma-54 interaction domain AAA_16 PF13191.6 gi|336254166|ref|YP_004597273.1| - 0.31 11.4 6.1 1.2 9.5 0.2 3.4 3 1 0 3 3 3 0 AAA ATPase domain CobN-Mg_chel PF02514.16 gi|336254167|ref|YP_004597274.1| - 0 1251.4 0.0 0 1251.1 0.0 1.0 1 0 0 1 1 1 1 CobN/Magnesium Chelatase LexA_DNA_bind PF01726.16 gi|336254167|ref|YP_004597274.1| - 0.0057 16.4 0.0 0.016 14.9 0.0 1.7 1 0 0 1 1 1 1 LexA DNA binding domain CbiC PF02570.15 gi|336254168|ref|YP_004597275.1| - 1.4e-51 175.0 1.2 1.7e-51 174.7 1.2 1.1 1 0 0 1 1 1 1 Precorrin-8X methylmutase DUF3531 PF12049.8 gi|336254168|ref|YP_004597275.1| - 0.19 11.6 0.0 0.32 10.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3531) TP_methylase PF00590.20 gi|336254169|ref|YP_004597276.1| - 1.2e-36 126.7 0.7 1.4e-36 126.5 0.7 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Methyltransf_11 PF08241.12 gi|336254170|ref|YP_004597277.1| - 2.5e-26 92.2 0.0 4e-26 91.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|336254170|ref|YP_004597277.1| - 5.3e-25 88.0 0.0 1e-24 87.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|336254170|ref|YP_004597277.1| - 3.5e-23 82.1 0.0 4.7e-23 81.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|336254170|ref|YP_004597277.1| - 8.1e-20 71.3 0.0 1.1e-19 70.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|336254170|ref|YP_004597277.1| - 1.7e-18 66.9 0.0 2.6e-18 66.2 0.0 1.3 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|336254170|ref|YP_004597277.1| - 1.8e-14 54.2 0.0 3e-14 53.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|336254170|ref|YP_004597277.1| - 3.6e-07 29.9 0.0 5.5e-07 29.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain TehB PF03848.14 gi|336254170|ref|YP_004597277.1| - 2.5e-05 23.8 0.0 3.4e-05 23.3 0.0 1.1 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_32 PF13679.6 gi|336254170|ref|YP_004597277.1| - 6.5e-05 23.0 0.0 0.00017 21.6 0.0 1.6 1 1 1 2 2 2 1 Methyltransferase domain MetW PF07021.12 gi|336254170|ref|YP_004597277.1| - 9.2e-05 22.1 0.0 0.00013 21.7 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW TPMT PF05724.11 gi|336254170|ref|YP_004597277.1| - 0.00029 20.6 0.0 0.00069 19.3 0.0 1.6 2 0 0 2 2 2 1 Thiopurine S-methyltransferase (TPMT) DREV PF05219.12 gi|336254170|ref|YP_004597277.1| - 0.00049 19.3 0.0 0.0006 19.0 0.0 1.2 1 0 0 1 1 1 1 DREV methyltransferase NodS PF05401.11 gi|336254170|ref|YP_004597277.1| - 0.00062 19.4 0.0 0.00081 19.1 0.0 1.2 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_2 PF00891.18 gi|336254170|ref|YP_004597277.1| - 0.00065 19.1 0.0 0.00088 18.6 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase domain AdoMet_MTase PF07757.13 gi|336254170|ref|YP_004597277.1| - 0.0011 19.3 0.0 0.0017 18.7 0.0 1.3 1 0 0 1 1 1 1 Predicted AdoMet-dependent methyltransferase GidB PF02527.15 gi|336254170|ref|YP_004597277.1| - 0.0013 18.1 0.0 0.0027 17.0 0.0 1.4 1 1 0 1 1 1 1 rRNA small subunit methyltransferase G PrmA PF06325.13 gi|336254170|ref|YP_004597277.1| - 0.0013 18.2 0.0 0.0018 17.8 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) PCMT PF01135.19 gi|336254170|ref|YP_004597277.1| - 0.0019 18.0 0.0 0.0031 17.3 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CMAS PF02353.20 gi|336254170|ref|YP_004597277.1| - 0.0028 17.0 0.0 0.0035 16.7 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_18 PF12847.7 gi|336254170|ref|YP_004597277.1| - 0.0053 16.7 0.0 0.01 15.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_29 PF03141.16 gi|336254170|ref|YP_004597277.1| - 0.056 12.0 0.0 0.12 10.9 0.0 1.6 1 1 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase ADH_zinc_N PF00107.26 gi|336254170|ref|YP_004597277.1| - 0.19 11.7 0.0 0.39 10.7 0.0 1.5 1 0 0 1 1 1 0 Zinc-binding dehydrogenase DUF1802 PF08819.11 gi|336254172|ref|YP_004597279.1| - 5e-40 137.2 0.0 5.7e-40 137.0 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF1802) GATase_3 PF07685.14 gi|336254173|ref|YP_004597280.1| - 1.2e-31 109.8 0.0 1.6e-31 109.5 0.0 1.1 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.23 gi|336254173|ref|YP_004597280.1| - 2.2e-11 43.9 0.0 3.7e-11 43.2 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 gi|336254173|ref|YP_004597280.1| - 6.5e-11 42.4 0.0 1.9e-06 27.9 0.0 2.2 2 0 0 2 2 2 2 AAA domain CTP_synth_N PF06418.14 gi|336254173|ref|YP_004597280.1| - 0.0023 17.3 0.1 0.0044 16.4 0.1 1.4 1 0 0 1 1 1 1 CTP synthase N-terminus SNO PF01174.19 gi|336254173|ref|YP_004597280.1| - 0.0097 15.8 0.0 0.021 14.6 0.0 1.5 1 0 0 1 1 1 1 SNO glutamine amidotransferase family Methyltransf_25 PF13649.6 gi|336254174|ref|YP_004597281.1| - 0.0005 20.7 0.1 0.00081 20.1 0.1 1.5 1 1 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|336254174|ref|YP_004597281.1| - 0.0024 17.5 0.0 0.0037 16.9 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_11 PF08241.12 gi|336254174|ref|YP_004597281.1| - 0.0031 18.1 0.1 0.0093 16.6 0.1 1.7 1 1 1 2 2 2 1 Methyltransferase domain PCMT PF01135.19 gi|336254174|ref|YP_004597281.1| - 0.0077 16.0 0.0 0.013 15.2 0.0 1.3 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) GATase_3 PF07685.14 gi|336254174|ref|YP_004597281.1| - 0.022 14.3 0.0 0.037 13.6 0.0 1.4 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain MTS PF05175.14 gi|336254174|ref|YP_004597281.1| - 0.027 14.0 0.1 0.058 12.9 0.0 1.5 2 0 0 2 2 2 0 Methyltransferase small domain DOT1 PF08123.13 gi|336254174|ref|YP_004597281.1| - 0.086 12.4 0.0 0.13 11.8 0.0 1.3 1 0 0 1 1 1 0 Histone methylation protein DOT1 CMAS PF02353.20 gi|336254174|ref|YP_004597281.1| - 0.089 12.1 0.0 0.14 11.4 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_31 PF13847.6 gi|336254174|ref|YP_004597281.1| - 0.1 12.4 0.0 0.12 12.2 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_16 PF10294.9 gi|336254174|ref|YP_004597281.1| - 0.17 11.6 0.0 0.24 11.1 0.0 1.2 1 0 0 1 1 1 0 Lysine methyltransferase TP_methylase PF00590.20 gi|336254175|ref|YP_004597282.1| - 1.8e-36 126.1 1.1 3.1e-36 125.3 1.1 1.4 1 1 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases TP_methylase PF00590.20 gi|336254176|ref|YP_004597283.1| - 1.3e-38 133.1 0.2 1.8e-38 132.7 0.2 1.2 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Radical_SAM PF04055.21 gi|336254176|ref|YP_004597283.1| - 0.00068 20.0 0.1 0.0016 18.8 0.1 1.8 1 1 0 1 1 1 1 Radical SAM superfamily RraB PF06877.11 gi|336254176|ref|YP_004597283.1| - 0.01 16.5 0.0 0.036 14.8 0.0 1.9 2 0 0 2 2 2 0 Regulator of ribonuclease activity B CbiA PF01656.23 gi|336254177|ref|YP_004597284.1| - 2.3e-10 40.6 0.0 5.3e-10 39.5 0.0 1.6 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 gi|336254177|ref|YP_004597284.1| - 8.6e-08 32.2 0.1 9.9e-06 25.5 0.0 2.3 2 0 0 2 2 2 1 AAA domain ParA PF10609.9 gi|336254177|ref|YP_004597284.1| - 1.8e-07 30.9 0.0 1e-06 28.4 0.0 2.0 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase AAA_25 PF13481.6 gi|336254177|ref|YP_004597284.1| - 1.4e-06 28.1 2.9 0.00063 19.4 0.0 3.4 3 1 1 4 4 4 2 AAA domain AAA_31 PF13614.6 gi|336254177|ref|YP_004597284.1| - 5.7e-05 23.1 0.0 0.0042 17.0 0.0 2.2 2 0 0 2 2 2 1 AAA domain AP_endonuc_2 PF01261.24 gi|336254177|ref|YP_004597284.1| - 9e-05 22.0 0.0 0.14 11.6 0.0 2.4 2 1 0 2 2 2 2 Xylose isomerase-like TIM barrel MipZ PF09140.11 gi|336254177|ref|YP_004597284.1| - 0.00011 21.6 0.0 0.00029 20.2 0.0 1.6 2 0 0 2 2 2 1 ATPase MipZ Acetyltransf_6 PF13480.7 gi|336254177|ref|YP_004597284.1| - 0.011 15.8 2.2 0.021 15.0 1.1 2.0 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain TPP_enzyme_M PF00205.22 gi|336254177|ref|YP_004597284.1| - 0.037 13.8 0.0 0.092 12.5 0.0 1.6 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, central domain CBP_BcsQ PF06564.12 gi|336254177|ref|YP_004597284.1| - 0.046 13.2 0.0 0.65 9.4 0.0 2.2 2 0 0 2 2 2 0 Cellulose biosynthesis protein BcsQ RcpC PF16976.5 gi|336254178|ref|YP_004597285.1| - 0.05 13.6 0.8 0.11 12.6 0.1 2.0 2 0 0 2 2 2 0 Flp pilus assembly protein RcpC/CpaB 5TM-5TMR_LYT PF07694.12 gi|336254178|ref|YP_004597285.1| - 1.3 8.5 6.0 2.1 7.8 6.0 1.2 1 0 0 1 1 1 0 5TMR of 5TMR-LYT TrkA_C PF02080.21 gi|336254179|ref|YP_004597286.1| - 0.019 14.8 0.0 0.039 13.8 0.0 1.6 1 0 0 1 1 1 0 TrkA-C domain ParA PF10609.9 gi|336254181|ref|YP_004597288.1| - 7.5e-10 38.7 2.3 3.8e-05 23.3 0.3 2.4 2 1 1 3 3 3 2 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|336254181|ref|YP_004597288.1| - 2.4e-09 37.3 0.0 3.1e-09 37.0 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|336254181|ref|YP_004597288.1| - 8.6e-08 32.3 0.0 0.0021 18.0 0.2 2.1 2 0 0 2 2 2 2 AAA domain Fer4_NifH PF00142.18 gi|336254181|ref|YP_004597288.1| - 1.5e-06 27.9 0.1 0.0085 15.6 0.0 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CBP_BcsQ PF06564.12 gi|336254181|ref|YP_004597288.1| - 1.6e-06 27.7 2.9 5.8e-05 22.7 0.2 2.7 2 1 0 2 2 2 1 Cellulose biosynthesis protein BcsQ MipZ PF09140.11 gi|336254181|ref|YP_004597288.1| - 0.0001 21.7 0.3 0.06 12.6 0.0 2.2 2 0 0 2 2 2 2 ATPase MipZ AAA_33 PF13671.6 gi|336254181|ref|YP_004597288.1| - 0.00021 21.5 0.8 0.002 18.3 0.8 2.3 1 1 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.15 gi|336254181|ref|YP_004597288.1| - 0.12 11.5 0.6 0.21 10.7 0.6 1.4 1 0 0 1 1 1 0 Anion-transporting ATPase Aldo_ket_red PF00248.21 gi|336254182|ref|YP_004597289.1| - 4.2e-72 242.8 0.0 4.7e-72 242.7 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family TENA_THI-4 PF03070.16 gi|336254183|ref|YP_004597290.1| - 1.5e-50 172.0 1.1 1.7e-50 171.8 1.1 1.0 1 0 0 1 1 1 1 TENA/THI-4/PQQC family Haem_oxygenas_2 PF14518.6 gi|336254183|ref|YP_004597290.1| - 0.019 14.8 1.4 0.032 14.0 1.4 1.5 1 1 0 1 1 1 0 Iron-containing redox enzyme CBS PF00571.28 gi|336254185|ref|YP_004597292.1| - 1.5e-23 83.0 3.1 3e-11 43.6 0.4 2.1 2 0 0 2 2 2 2 CBS domain His_biosynth PF00977.21 gi|336254185|ref|YP_004597292.1| - 0.11 12.0 0.0 1.5 8.2 0.0 2.0 1 1 1 2 2 2 0 Histidine biosynthesis protein MFS_1 PF07690.16 gi|336254186|ref|YP_004597293.1| - 1e-22 80.6 59.5 1.8e-17 63.3 40.8 2.4 1 1 1 2 2 2 2 Major Facilitator Superfamily Molybdopterin PF00384.22 gi|336254187|ref|YP_004597294.1| - 4.5e-80 269.7 0.0 5.6e-80 269.4 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|336254187|ref|YP_004597294.1| - 2.8e-28 98.1 0.1 5.5e-28 97.2 0.1 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Fer2_4 PF13510.6 gi|336254187|ref|YP_004597294.1| - 8.6e-24 83.4 0.2 2.1e-23 82.2 0.2 1.7 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain NADH-G_4Fe-4S_3 PF10588.9 gi|336254187|ref|YP_004597294.1| - 2.1e-12 46.4 1.8 2.1e-12 46.4 1.8 2.2 2 0 0 2 2 1 1 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Molybdop_Fe4S4 PF04879.16 gi|336254187|ref|YP_004597294.1| - 1.4e-11 44.2 0.3 1.4e-11 44.2 0.3 2.3 2 0 0 2 2 1 1 Molybdopterin oxidoreductase Fe4S4 domain Fer4_6 PF12837.7 gi|336254187|ref|YP_004597294.1| - 3.8e-10 39.4 20.2 4.9e-07 29.5 1.0 3.4 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|336254187|ref|YP_004597294.1| - 4.4e-09 36.3 8.3 4.4e-09 36.3 8.3 3.2 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|336254187|ref|YP_004597294.1| - 1.2e-08 35.3 9.9 1.2e-08 35.3 9.9 4.0 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|336254187|ref|YP_004597294.1| - 4.6e-08 32.6 12.9 8.9e-07 28.5 1.4 3.7 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|336254187|ref|YP_004597294.1| - 4.2e-07 30.0 6.2 4.2e-07 30.0 6.2 4.0 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|336254187|ref|YP_004597294.1| - 3.1e-05 24.0 22.5 0.00029 20.9 14.1 4.2 3 2 1 4 4 4 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|336254187|ref|YP_004597294.1| - 7.3e-05 23.1 8.6 7.3e-05 23.1 8.6 3.5 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|336254187|ref|YP_004597294.1| - 0.0001 23.0 12.0 0.015 16.1 0.6 4.3 4 0 0 4 4 3 2 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|336254187|ref|YP_004597294.1| - 0.00032 21.2 8.5 0.082 13.5 0.4 3.1 2 0 0 2 2 2 2 4Fe-4S single cluster domain of Ferredoxin I Fer4_16 PF13484.6 gi|336254187|ref|YP_004597294.1| - 0.00058 20.7 0.3 0.00058 20.7 0.3 4.1 5 0 0 5 5 3 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.7 gi|336254187|ref|YP_004597294.1| - 0.0019 18.2 15.4 0.0032 17.5 4.5 4.4 5 0 0 5 5 4 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|336254187|ref|YP_004597294.1| - 0.0042 17.9 8.4 0.098 13.5 0.8 3.3 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|336254187|ref|YP_004597294.1| - 0.017 15.3 14.0 0.023 14.9 0.8 3.0 2 1 1 3 3 3 0 4Fe-4S dicluster domain Complex1_51K PF01512.17 gi|336254188|ref|YP_004597295.1| - 9.9e-19 67.7 0.0 1.8e-18 66.9 0.0 1.4 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase 51 Kd subunit NADH_4Fe-4S PF10589.9 gi|336254188|ref|YP_004597295.1| - 3.2e-18 65.6 1.1 3.2e-18 65.6 1.1 1.7 2 0 0 2 2 2 1 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Glyco_tranf_2_3 PF13641.6 gi|336254188|ref|YP_004597295.1| - 0.025 14.5 0.9 0.14 12.0 0.5 2.4 2 0 0 2 2 2 0 Glycosyltransferase like family 2 RTP1_C2 PF10304.9 gi|336254188|ref|YP_004597295.1| - 0.034 13.8 0.4 0.088 12.5 0.4 1.8 1 0 0 1 1 1 0 Required for nuclear transport of RNA pol II C-terminus 2 acVLRF1 PF18859.1 gi|336254188|ref|YP_004597295.1| - 0.31 11.3 6.0 0.8 10.0 0.1 3.5 3 0 0 3 3 3 0 Actinobacteria/chloroflexi VLRF1 release factor PMSR PF01625.21 gi|336254189|ref|YP_004597296.1| - 4.4e-66 221.8 1.3 5.1e-66 221.6 1.3 1.0 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase DUF4298 PF14131.6 gi|336254189|ref|YP_004597296.1| - 0.084 12.8 0.4 0.14 12.2 0.4 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4298) HMA PF00403.26 gi|336254189|ref|YP_004597296.1| - 0.13 12.8 0.0 1.2 9.6 0.0 2.4 3 0 0 3 3 3 0 Heavy-metal-associated domain RibD_C PF01872.17 gi|336254190|ref|YP_004597297.1| - 3e-55 187.2 0.2 3.3e-55 187.0 0.2 1.0 1 0 0 1 1 1 1 RibD C-terminal domain EamA PF00892.20 gi|336254192|ref|YP_004597299.1| - 2.3e-27 95.9 29.9 9.8e-15 54.9 11.8 2.0 2 0 0 2 2 2 2 EamA-like transporter family TPT PF03151.16 gi|336254192|ref|YP_004597299.1| - 0.1 11.9 9.9 0.046 13.1 1.8 2.3 1 1 1 3 3 3 0 Triose-phosphate Transporter family NosL PF05573.12 gi|336254193|ref|YP_004597300.1| - 2.4e-13 50.5 0.0 3.4e-13 50.1 0.0 1.2 1 0 0 1 1 1 1 NosL TAT_signal PF10518.9 gi|336254193|ref|YP_004597300.1| - 0.062 13.2 3.8 0.11 12.4 3.8 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Polyketide_cyc PF03364.20 gi|336254194|ref|YP_004597301.1| - 3e-07 30.7 0.1 4.3e-07 30.2 0.1 1.3 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc2 PF10604.9 gi|336254194|ref|YP_004597301.1| - 0.00016 22.0 1.5 0.00017 21.9 1.5 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport PhoU PF01895.19 gi|336254195|ref|YP_004597302.1| - 3.5e-20 72.3 9.1 1.8e-17 63.6 1.8 2.5 2 0 0 2 2 2 2 PhoU domain MazE_antitoxin PF04014.18 gi|336254195|ref|YP_004597302.1| - 4.4e-09 36.1 0.0 1.3e-08 34.6 0.0 1.8 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin CorA PF01544.18 gi|336254196|ref|YP_004597303.1| - 4.6e-05 22.9 1.6 4.6e-05 22.9 1.6 1.8 2 0 0 2 2 2 1 CorA-like Mg2+ transporter protein BLOC1_2 PF10046.9 gi|336254196|ref|YP_004597303.1| - 0.00063 20.0 0.2 0.22 11.8 0.1 2.8 2 1 0 2 2 2 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 Spectrin PF00435.21 gi|336254196|ref|YP_004597303.1| - 0.0029 18.1 0.8 1.2 9.6 0.1 3.2 1 1 3 4 4 4 1 Spectrin repeat Laminin_II PF06009.12 gi|336254196|ref|YP_004597303.1| - 0.0067 16.4 0.1 1.9 8.5 0.1 2.3 2 0 0 2 2 2 2 Laminin Domain II Snapin_Pallidin PF14712.6 gi|336254196|ref|YP_004597303.1| - 0.009 16.4 0.0 1.4 9.4 0.0 3.3 3 1 0 3 3 3 1 Snapin/Pallidin NPV_P10 PF05531.12 gi|336254196|ref|YP_004597303.1| - 0.045 14.2 0.2 14 6.3 0.5 3.8 2 1 0 2 2 2 0 Nucleopolyhedrovirus P10 protein DUF1664 PF07889.12 gi|336254196|ref|YP_004597303.1| - 0.096 12.7 0.0 3.3 7.8 0.0 2.9 2 1 0 3 3 3 0 Protein of unknown function (DUF1664) KASH_CCD PF14662.6 gi|336254196|ref|YP_004597303.1| - 0.17 11.7 0.0 0.35 10.7 0.0 1.6 1 0 0 1 1 1 0 Coiled-coil region of CCDC155 or KASH ATG16 PF08614.11 gi|336254196|ref|YP_004597303.1| - 0.87 9.8 7.1 0.28 11.4 0.6 2.8 2 2 0 2 2 2 0 Autophagy protein 16 (ATG16) Rbsn PF11464.8 gi|336254196|ref|YP_004597303.1| - 1.2 8.9 3.4 1 9.1 0.5 2.4 2 0 0 2 2 2 0 Rabenosyn Rab binding domain PhoU PF01895.19 gi|336254197|ref|YP_004597304.1| - 8.2e-39 132.0 10.3 3.8e-22 78.5 0.7 2.1 2 0 0 2 2 2 2 PhoU domain Kre28 PF17097.5 gi|336254197|ref|YP_004597304.1| - 0.083 11.8 0.3 5.2 5.9 0.0 2.1 2 0 0 2 2 2 0 Spindle pole body component HSCB_C PF07743.13 gi|336254197|ref|YP_004597304.1| - 1.2 9.7 5.4 0.63 10.6 0.7 2.4 2 0 0 2 2 2 0 HSCB C-terminal oligomerisation domain ABC_tran PF00005.27 gi|336254198|ref|YP_004597305.1| - 1.5e-31 109.7 0.0 2.5e-31 109.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|336254198|ref|YP_004597305.1| - 1e-11 45.2 0.0 8.2e-05 22.5 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|336254198|ref|YP_004597305.1| - 2.3e-08 33.8 0.0 1.3e-06 28.0 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|336254198|ref|YP_004597305.1| - 1.8e-05 24.6 0.0 9.3e-05 22.3 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|336254198|ref|YP_004597305.1| - 0.00016 22.0 0.0 0.00047 20.4 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|336254198|ref|YP_004597305.1| - 0.00016 22.1 0.2 0.00051 20.5 0.2 1.9 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|336254198|ref|YP_004597305.1| - 0.00019 21.4 0.0 0.00044 20.2 0.0 1.6 1 0 0 1 1 1 1 RsgA GTPase AAA_29 PF13555.6 gi|336254198|ref|YP_004597305.1| - 0.00046 19.9 0.0 0.00096 18.8 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.6 gi|336254198|ref|YP_004597305.1| - 0.00075 19.1 0.1 0.022 14.4 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.6 gi|336254198|ref|YP_004597305.1| - 0.0017 18.9 0.0 0.0038 17.7 0.0 1.6 1 0 0 1 1 1 1 AAA domain Rad17 PF03215.15 gi|336254198|ref|YP_004597305.1| - 0.0027 17.7 0.0 0.0044 17.0 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain DeoRC PF00455.22 gi|336254198|ref|YP_004597305.1| - 0.011 15.7 0.0 0.019 14.9 0.0 1.3 1 0 0 1 1 1 0 DeoR C terminal sensor domain AAA_30 PF13604.6 gi|336254198|ref|YP_004597305.1| - 0.014 15.2 0.0 0.36 10.5 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|336254198|ref|YP_004597305.1| - 0.035 14.3 0.0 0.097 12.8 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|336254198|ref|YP_004597305.1| - 0.046 14.3 0.2 0.17 12.5 0.0 2.1 3 0 0 3 3 2 0 AAA domain NB-ARC PF00931.22 gi|336254198|ref|YP_004597305.1| - 0.059 12.5 0.0 0.077 12.2 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain Adeno_IVa2 PF02456.15 gi|336254198|ref|YP_004597305.1| - 0.071 11.9 0.0 1.6 7.4 0.0 2.1 2 0 0 2 2 2 0 Adenovirus IVa2 protein BPD_transp_1 PF00528.22 gi|336254199|ref|YP_004597306.1| - 4.5e-19 68.9 15.4 4.5e-19 68.9 15.4 4.8 1 1 4 5 5 5 1 Binding-protein-dependent transport system inner membrane component TNFR_16_TM PF18422.1 gi|336254199|ref|YP_004597306.1| - 5.6 7.0 5.4 25 4.9 5.4 2.2 1 0 0 1 1 1 0 Tumor necrosis factor receptor member 16 trans-membrane domain BPD_transp_1 PF00528.22 gi|336254200|ref|YP_004597307.1| - 1.4e-17 64.0 11.6 1.4e-17 64.0 11.6 2.7 1 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component DUF2048 PF09752.9 gi|336254200|ref|YP_004597307.1| - 0.039 13.0 0.1 0.06 12.4 0.1 1.2 1 0 0 1 1 1 0 Abhydrolase domain containing 18 Abhydrolase_6 PF12697.7 gi|336254200|ref|YP_004597307.1| - 0.25 11.9 6.9 0.35 11.5 6.2 1.8 1 1 0 1 1 1 0 Alpha/beta hydrolase family YlaC PF10777.9 gi|336254200|ref|YP_004597307.1| - 1 9.2 3.9 0.92 9.3 0.1 2.5 3 0 0 3 3 3 0 Inner membrane protein YlaC PBP_like_2 PF12849.7 gi|336254201|ref|YP_004597308.1| - 7.9e-22 78.2 0.6 7.9e-22 78.2 0.6 1.8 2 1 0 2 2 2 1 PBP superfamily domain PBP_like PF12727.7 gi|336254201|ref|YP_004597308.1| - 1.1e-11 44.2 0.1 1.8e-11 43.6 0.1 1.2 1 0 0 1 1 1 1 PBP superfamily domain Hydrolase PF00702.26 gi|336254201|ref|YP_004597308.1| - 0.03 14.6 0.1 0.067 13.5 0.0 1.6 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase TAT_signal PF10518.9 gi|336254201|ref|YP_004597308.1| - 0.083 12.8 3.1 0.16 11.8 3.1 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Metallophos PF00149.28 gi|336254202|ref|YP_004597309.1| - 2.7e-18 67.2 0.2 3.6e-18 66.8 0.2 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|336254202|ref|YP_004597309.1| - 1.2e-10 41.8 0.6 3.8e-10 40.2 0.6 1.7 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain zf-Di19 PF05605.12 gi|336254203|ref|YP_004597310.1| - 0.023 15.0 0.1 0.034 14.4 0.1 1.2 1 0 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding zf-C2H2_2 PF12756.7 gi|336254203|ref|YP_004597310.1| - 0.089 13.1 0.1 0.11 12.8 0.1 1.1 1 0 0 1 1 1 0 C2H2 type zinc-finger (2 copies) YlqD PF11068.8 gi|336254204|ref|YP_004597311.1| - 0.016 15.6 4.9 0.016 15.6 4.9 2.4 2 1 1 3 3 3 0 YlqD protein LuxC PF05893.14 gi|336254204|ref|YP_004597311.1| - 0.039 13.0 0.7 0.054 12.5 0.7 1.1 1 0 0 1 1 1 0 Acyl-CoA reductase (LuxC) DUF3584 PF12128.8 gi|336254204|ref|YP_004597311.1| - 0.04 11.4 10.0 0.0079 13.8 6.1 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3584) Exonuc_VII_L PF02601.15 gi|336254204|ref|YP_004597311.1| - 0.086 12.4 5.2 0.033 13.7 2.6 1.6 2 0 0 2 2 2 0 Exonuclease VII, large subunit Laminin_II PF06009.12 gi|336254204|ref|YP_004597311.1| - 0.11 12.6 2.3 0.25 11.3 2.3 1.6 1 0 0 1 1 1 0 Laminin Domain II YkyA PF10368.9 gi|336254204|ref|YP_004597311.1| - 0.16 11.6 2.0 0.39 10.4 2.0 1.7 1 1 0 1 1 1 0 Putative cell-wall binding lipoprotein Baculo_PEP_C PF04513.12 gi|336254204|ref|YP_004597311.1| - 1 9.4 3.8 5.9 6.9 0.3 2.6 2 1 1 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF4407 PF14362.6 gi|336254204|ref|YP_004597311.1| - 1.7 7.9 13.1 13 5.0 0.1 2.1 1 1 0 2 2 2 0 Domain of unknown function (DUF4407) HTH_24 PF13412.6 gi|336254206|ref|YP_004597313.1| - 7.1e-14 51.1 0.0 1.3e-13 50.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.21 gi|336254206|ref|YP_004597313.1| - 7.7e-12 45.0 0.0 1.3e-11 44.3 0.0 1.3 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_AsnC-type PF13404.6 gi|336254206|ref|YP_004597313.1| - 1.2e-09 37.9 0.0 2.1e-09 37.0 0.0 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_IclR PF09339.10 gi|336254206|ref|YP_004597313.1| - 5.6e-08 32.5 0.0 1e-07 31.6 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.12 gi|336254206|ref|YP_004597313.1| - 9.6e-08 31.9 0.2 3.1e-07 30.2 0.0 2.0 2 1 0 2 2 1 1 HTH domain HTH_36 PF13730.6 gi|336254206|ref|YP_004597313.1| - 4.1e-07 29.9 0.0 7.5e-07 29.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|336254206|ref|YP_004597313.1| - 1e-06 28.3 0.0 2.3e-06 27.2 0.0 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain Fe_dep_repress PF01325.19 gi|336254206|ref|YP_004597313.1| - 5.6e-06 26.5 0.1 1.6e-05 25.0 0.1 1.7 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_23 PF13384.6 gi|336254206|ref|YP_004597313.1| - 7.7e-06 25.5 0.0 1.7e-05 24.5 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_5 PF01022.20 gi|336254206|ref|YP_004597313.1| - 8.3e-06 25.6 0.0 1.7e-05 24.6 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|336254206|ref|YP_004597313.1| - 9.5e-06 25.4 0.0 0.00012 21.9 0.0 2.2 2 0 0 2 2 2 1 MarR family FaeA PF04703.12 gi|336254206|ref|YP_004597313.1| - 1.3e-05 25.5 0.0 2.1e-05 24.8 0.0 1.3 1 0 0 1 1 1 1 FaeA-like protein LacI PF00356.21 gi|336254206|ref|YP_004597313.1| - 4e-05 23.3 0.0 0.00066 19.4 0.0 2.3 2 0 0 2 2 2 1 Bacterial regulatory proteins, lacI family MarR PF01047.22 gi|336254206|ref|YP_004597313.1| - 4.2e-05 23.4 0.0 9.6e-05 22.2 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|336254206|ref|YP_004597313.1| - 4.4e-05 23.4 0.0 8e-05 22.5 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_20 PF12840.7 gi|336254206|ref|YP_004597313.1| - 6.1e-05 23.0 0.0 0.00013 21.9 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_28 PF13518.6 gi|336254206|ref|YP_004597313.1| - 7.5e-05 22.8 0.0 0.00017 21.6 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_29 PF13551.6 gi|336254206|ref|YP_004597313.1| - 8.9e-05 22.4 0.0 0.00016 21.6 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn helix Rrf2 PF02082.20 gi|336254206|ref|YP_004597313.1| - 0.00012 22.4 0.1 0.00062 20.1 0.0 2.0 1 1 1 2 2 2 1 Transcriptional regulator TrmB PF01978.19 gi|336254206|ref|YP_004597313.1| - 0.00018 21.3 0.1 0.00033 20.5 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB GntR PF00392.21 gi|336254206|ref|YP_004597313.1| - 0.00048 19.7 0.1 0.0012 18.4 0.0 1.7 2 0 0 2 2 1 1 Bacterial regulatory proteins, gntR family HTH_10 PF04967.12 gi|336254206|ref|YP_004597313.1| - 0.0019 18.0 0.1 0.0049 16.6 0.0 1.7 2 0 0 2 2 1 1 HTH DNA binding domain HTH_47 PF16221.5 gi|336254206|ref|YP_004597313.1| - 0.0026 17.3 0.0 0.005 16.4 0.0 1.5 1 0 0 1 1 1 1 winged helix-turn-helix Sigma70_r4_2 PF08281.12 gi|336254206|ref|YP_004597313.1| - 0.0031 17.1 0.0 0.0064 16.1 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 DUF1670 PF07900.11 gi|336254206|ref|YP_004597313.1| - 0.0053 16.1 0.1 0.0071 15.7 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1670) HTH_Mga PF08280.11 gi|336254206|ref|YP_004597313.1| - 0.0056 16.7 0.0 0.012 15.6 0.0 1.6 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain TetR_N PF00440.23 gi|336254206|ref|YP_004597313.1| - 0.0071 16.1 0.1 0.013 15.2 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TFIIE_alpha PF02002.17 gi|336254206|ref|YP_004597313.1| - 0.008 16.0 0.0 0.011 15.6 0.0 1.3 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_Tnp_ISL3 PF13542.6 gi|336254206|ref|YP_004597313.1| - 0.015 14.7 0.0 0.022 14.2 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_3 PF01381.22 gi|336254206|ref|YP_004597313.1| - 0.017 15.2 0.0 0.039 14.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix HTH_6 PF01418.17 gi|336254206|ref|YP_004597313.1| - 0.025 14.5 0.0 0.046 13.7 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family HTH_1 PF00126.27 gi|336254206|ref|YP_004597313.1| - 0.027 14.4 0.0 0.05 13.6 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_45 PF14947.6 gi|336254206|ref|YP_004597313.1| - 0.034 14.1 0.0 0.068 13.2 0.0 1.6 1 1 0 1 1 1 0 Winged helix-turn-helix DUF4110 PF13422.6 gi|336254206|ref|YP_004597313.1| - 0.038 14.0 0.0 0.065 13.3 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4110) HTH_27 PF13463.6 gi|336254206|ref|YP_004597313.1| - 0.053 14.0 0.0 0.14 12.7 0.0 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_40 PF14493.6 gi|336254206|ref|YP_004597313.1| - 0.064 13.7 0.0 0.14 12.6 0.0 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_31 PF13560.6 gi|336254206|ref|YP_004597313.1| - 0.076 13.4 0.0 0.13 12.6 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain DUF3659 PF12396.8 gi|336254206|ref|YP_004597313.1| - 0.076 12.9 0.2 10 6.1 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3659) HTH_17 PF12728.7 gi|336254206|ref|YP_004597313.1| - 0.1 12.8 0.0 0.17 12.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|336254206|ref|YP_004597313.1| - 0.1 12.1 0.0 0.23 11.0 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 AbiEi_4 PF13338.6 gi|336254206|ref|YP_004597313.1| - 0.12 12.6 0.0 0.23 11.7 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator, AbiEi antitoxin TnsD PF15978.5 gi|336254206|ref|YP_004597313.1| - 0.12 11.3 0.0 0.14 11.1 0.0 1.1 1 0 0 1 1 1 0 Tn7-like transposition protein D RPA_C PF08784.11 gi|336254206|ref|YP_004597313.1| - 0.12 13.0 0.0 0.25 12.0 0.0 1.5 1 0 0 1 1 1 0 Replication protein A C terminal HTH_30 PF13556.6 gi|336254206|ref|YP_004597313.1| - 0.13 12.1 0.0 0.25 11.2 0.0 1.5 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain MerR PF00376.23 gi|336254206|ref|YP_004597313.1| - 0.13 12.0 0.0 0.3 10.9 0.0 1.6 1 0 0 1 1 1 0 MerR family regulatory protein HTH_32 PF13565.6 gi|336254206|ref|YP_004597313.1| - 0.14 12.8 0.1 0.46 11.1 0.1 1.9 1 1 1 2 2 2 0 Homeodomain-like domain Tetraspanin PF00335.20 gi|336254207|ref|YP_004597314.1| - 0.0033 17.2 1.2 0.0039 16.9 1.2 1.0 1 0 0 1 1 1 1 Tetraspanin family DZR PF12773.7 gi|336254208|ref|YP_004597315.1| - 5e-10 39.2 16.1 9.6e-10 38.3 10.5 3.0 3 0 0 3 3 3 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|336254208|ref|YP_004597315.1| - 1.3e-09 37.4 19.5 2.1e-06 27.2 2.7 3.4 3 0 0 3 3 3 2 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|336254208|ref|YP_004597315.1| - 6.5e-08 31.7 27.1 2.7e-05 23.4 3.4 3.9 4 0 0 4 4 4 2 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|336254208|ref|YP_004597315.1| - 0.00038 21.2 15.9 0.018 15.8 0.5 3.3 3 1 0 3 3 3 2 zinc-ribbon family UPF0547 PF10571.9 gi|336254208|ref|YP_004597315.1| - 0.003 17.6 5.2 0.003 17.6 5.2 3.2 4 0 0 4 4 3 1 Uncharacterised protein family UPF0547 DUF35_N PF12172.8 gi|336254208|ref|YP_004597315.1| - 0.0037 17.1 17.0 0.029 14.3 3.5 3.2 3 0 0 3 3 3 2 Rubredoxin-like zinc ribbon domain (DUF35_N) RseC_MucC PF04246.12 gi|336254208|ref|YP_004597315.1| - 0.0067 16.4 0.7 0.0067 16.4 0.7 2.2 2 0 0 2 2 2 1 Positive regulator of sigma(E), RseC/MucC Phage_holin_2_4 PF16082.5 gi|336254208|ref|YP_004597315.1| - 0.022 14.5 2.3 0.022 14.5 0.4 2.1 2 0 0 2 2 2 0 Bacteriophage holin family, superfamily II-like Nudix_N_2 PF14803.6 gi|336254208|ref|YP_004597315.1| - 0.031 14.2 15.9 1.6 8.7 0.2 5.4 5 0 0 5 5 5 0 Nudix N-terminal NinG PF05766.12 gi|336254208|ref|YP_004597315.1| - 0.061 13.3 0.1 0.25 11.3 0.0 1.9 2 0 0 2 2 2 0 Bacteriophage Lambda NinG protein Phage_holin_2_3 PF16080.5 gi|336254208|ref|YP_004597315.1| - 0.45 10.3 3.7 1.6 8.5 3.7 1.9 1 1 0 1 1 1 0 Bacteriophage holin family HP1 Prok-RING_1 PF14446.6 gi|336254208|ref|YP_004597315.1| - 0.69 9.9 13.5 0.28 11.1 1.7 3.5 3 0 0 3 3 3 0 Prokaryotic RING finger family 1 Mut7-C PF01927.16 gi|336254208|ref|YP_004597315.1| - 0.81 9.8 0.0 0.81 9.8 0.0 2.1 2 0 0 2 2 2 0 Mut7-C RNAse domain zinc-ribbon_6 PF10005.9 gi|336254208|ref|YP_004597315.1| - 2.3 8.9 9.1 2.6 8.8 0.1 3.0 2 1 1 3 3 3 0 zinc-ribbon domain IBR PF01485.21 gi|336254208|ref|YP_004597315.1| - 3.2 8.0 11.4 1.3 9.3 6.0 2.8 3 1 0 3 3 3 0 IBR domain, a half RING-finger domain DUF1272 PF06906.11 gi|336254208|ref|YP_004597315.1| - 4.5 7.4 12.0 6 7.0 8.5 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1272) PHF5 PF03660.14 gi|336254208|ref|YP_004597315.1| - 4.8 7.4 12.0 8.6 6.6 2.4 3.0 2 1 0 2 2 2 0 PHF5-like protein C1_1 PF00130.22 gi|336254208|ref|YP_004597315.1| - 5.1 7.1 10.8 29 4.6 3.8 3.7 2 2 1 3 3 3 0 Phorbol esters/diacylglycerol binding domain (C1 domain) HypA PF01155.19 gi|336254208|ref|YP_004597315.1| - 6.4 6.8 12.7 2.5 8.1 2.2 3.1 2 1 1 3 3 3 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TPP_enzyme_C PF02775.21 gi|336254209|ref|YP_004597316.1| - 1.1e-31 109.6 0.1 1.7e-31 109.1 0.1 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.8 gi|336254209|ref|YP_004597316.1| - 0.0079 16.3 2.0 0.025 14.7 2.0 1.9 1 1 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal DUF2487 PF10673.9 gi|336254209|ref|YP_004597316.1| - 0.071 13.1 0.0 0.12 12.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2487) POR_N PF01855.19 gi|336254210|ref|YP_004597317.1| - 5.7e-50 170.2 0.0 1e-49 169.3 0.0 1.4 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.18 gi|336254210|ref|YP_004597317.1| - 6.6e-47 159.8 0.0 1.4e-46 158.8 0.0 1.5 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase PFOR_II PF17147.4 gi|336254210|ref|YP_004597317.1| - 6.4e-12 45.7 0.0 1.2e-11 44.8 0.0 1.5 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II TPP_enzyme_N PF02776.18 gi|336254210|ref|YP_004597317.1| - 0.00086 19.0 0.0 0.0017 18.0 0.0 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Transketolase_C PF02780.20 gi|336254210|ref|YP_004597317.1| - 0.0044 16.9 0.0 0.011 15.6 0.0 1.6 1 0 0 1 1 1 1 Transketolase, C-terminal domain DUF1664 PF07889.12 gi|336254210|ref|YP_004597317.1| - 0.14 12.2 0.1 1.3 9.1 0.0 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) Usp PF00582.26 gi|336254210|ref|YP_004597317.1| - 0.17 12.4 0.2 0.84 10.1 0.0 2.3 2 0 0 2 2 2 0 Universal stress protein family OsmC PF02566.19 gi|336254211|ref|YP_004597318.1| - 1.1e-16 61.1 0.0 1.8e-16 60.4 0.0 1.3 1 0 0 1 1 1 1 OsmC-like protein Biotin_lipoyl PF00364.22 gi|336254211|ref|YP_004597318.1| - 8.5e-08 31.9 0.0 1.9e-07 30.8 0.0 1.6 2 0 0 2 2 2 1 Biotin-requiring enzyme HlyD_3 PF13437.6 gi|336254211|ref|YP_004597318.1| - 0.014 16.0 0.3 0.12 13.1 0.1 2.4 2 1 1 3 3 3 0 HlyD family secretion protein Biotin_lipoyl_2 PF13533.6 gi|336254211|ref|YP_004597318.1| - 0.049 13.5 0.0 0.12 12.2 0.0 1.6 1 0 0 1 1 1 0 Biotin-lipoyl like PHP PF02811.19 gi|336254212|ref|YP_004597319.1| - 2.1e-05 24.9 0.0 2.5e-05 24.6 0.0 1.3 1 1 0 1 1 1 1 PHP domain PHP_C PF13263.6 gi|336254212|ref|YP_004597319.1| - 0.003 17.3 0.0 0.11 12.3 0.0 2.6 2 0 0 2 2 2 1 PHP-associated Chorismate_synt PF01264.21 gi|336254213|ref|YP_004597320.1| - 1.2e-122 408.7 0.0 1.4e-122 408.5 0.0 1.0 1 0 0 1 1 1 1 Chorismate synthase HIT PF01230.23 gi|336254214|ref|YP_004597321.1| - 1.4e-17 64.2 0.0 1.7e-17 63.9 0.0 1.1 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.8 gi|336254214|ref|YP_004597321.1| - 3.6e-09 37.1 0.0 4.7e-09 36.7 0.0 1.1 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.15 gi|336254214|ref|YP_004597321.1| - 0.0006 19.7 0.0 0.00077 19.3 0.0 1.2 1 0 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 Phosphodiest PF01663.22 gi|336254215|ref|YP_004597322.1| - 2.4e-32 112.9 1.0 7e-32 111.4 1.0 1.6 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase PglZ PF08665.12 gi|336254215|ref|YP_004597322.1| - 1.8e-05 24.9 0.0 0.014 15.5 0.1 2.2 2 0 0 2 2 2 2 PglZ domain Sulfatase PF00884.23 gi|336254215|ref|YP_004597322.1| - 0.00011 21.8 0.3 0.38 10.1 0.0 2.2 2 0 0 2 2 2 2 Sulfatase Alk_phosphatase PF00245.20 gi|336254215|ref|YP_004597322.1| - 0.0083 15.1 2.2 0.013 14.4 2.2 1.2 1 0 0 1 1 1 1 Alkaline phosphatase 2_5_RNA_ligase2 PF13563.6 gi|336254215|ref|YP_004597322.1| - 0.011 15.7 0.3 0.022 14.7 0.3 1.5 1 0 0 1 1 1 0 2'-5' RNA ligase superfamily Metalloenzyme PF01676.18 gi|336254215|ref|YP_004597322.1| - 0.073 12.4 0.3 0.2 11.0 0.2 1.7 2 0 0 2 2 2 0 Metalloenzyme superfamily YqjK PF13997.6 gi|336254215|ref|YP_004597322.1| - 0.2 11.9 0.5 0.43 10.9 0.5 1.5 1 0 0 1 1 1 0 YqjK-like protein EPSP_synthase PF00275.20 gi|336254216|ref|YP_004597323.1| - 9.5e-112 373.7 0.0 1.2e-111 373.5 0.0 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Cu_amine_oxidN1 PF07833.11 gi|336254216|ref|YP_004597323.1| - 0.038 14.5 0.1 0.17 12.4 0.1 2.1 1 1 0 1 1 1 0 Copper amine oxidase N-terminal domain DUF389 PF04087.14 gi|336254217|ref|YP_004597324.1| - 2.1e-31 108.9 20.8 2.1e-31 108.9 20.8 2.3 3 0 0 3 3 3 1 Domain of unknown function (DUF389) CPP1-like PF11833.8 gi|336254217|ref|YP_004597324.1| - 2 8.1 13.1 0.18 11.5 1.6 2.8 1 1 2 3 3 3 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like DUF2092 PF09865.9 gi|336254218|ref|YP_004597325.1| - 0.038 13.3 0.0 0.79 9.0 0.0 2.6 2 1 1 3 3 3 0 Predicted periplasmic protein (DUF2092) LolA_like PF17131.4 gi|336254218|ref|YP_004597325.1| - 0.098 12.4 0.0 0.5 10.1 0.0 1.9 1 1 0 1 1 1 0 Outer membrane lipoprotein-sorting protein Peptidase_M24 PF00557.24 gi|336254219|ref|YP_004597326.1| - 1.9e-51 174.7 0.4 2.6e-51 174.3 0.4 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|336254219|ref|YP_004597326.1| - 3.9e-08 34.0 0.0 7.5e-08 33.1 0.0 1.5 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain Trypsin_2 PF13365.6 gi|336254220|ref|YP_004597327.1| - 2.4e-27 96.7 4.0 4.6e-27 95.8 4.0 1.5 1 0 0 1 1 1 1 Trypsin-like peptidase domain PDZ_2 PF13180.6 gi|336254220|ref|YP_004597327.1| - 5.7e-15 55.4 0.2 1.3e-14 54.3 0.2 1.6 1 0 0 1 1 1 1 PDZ domain Trypsin PF00089.26 gi|336254220|ref|YP_004597327.1| - 4.9e-12 46.1 0.4 2e-11 44.2 0.4 1.8 1 1 0 1 1 1 1 Trypsin PDZ_6 PF17820.1 gi|336254220|ref|YP_004597327.1| - 0.0049 16.7 0.9 0.01 15.7 0.0 2.0 2 0 0 2 2 2 1 PDZ domain TAT_signal PF10518.9 gi|336254220|ref|YP_004597327.1| - 0.03 14.2 1.2 0.086 12.7 1.2 1.8 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Amino_oxidase PF01593.24 gi|336254221|ref|YP_004597328.1| - 8.8e-17 61.5 0.8 1.4e-08 34.5 0.1 2.0 1 1 1 2 2 2 2 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|336254221|ref|YP_004597328.1| - 1.2e-15 57.4 0.2 3e-15 56.2 0.2 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|336254221|ref|YP_004597328.1| - 0.00019 21.2 7.9 0.00032 20.4 5.5 2.1 1 1 1 2 2 2 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|336254221|ref|YP_004597328.1| - 0.034 13.4 0.4 0.061 12.5 0.4 1.4 1 0 0 1 1 1 0 Thi4 family Pyr_redox_2 PF07992.14 gi|336254221|ref|YP_004597328.1| - 0.054 12.7 2.2 0.82 8.8 0.9 2.5 2 1 1 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase DUF2285 PF10074.9 gi|336254221|ref|YP_004597328.1| - 0.11 13.1 3.5 15 6.3 0.0 3.0 3 0 0 3 3 3 0 Uncharacterized conserved protein (DUF2285) Pyr_redox PF00070.27 gi|336254221|ref|YP_004597328.1| - 0.13 12.9 0.5 11 6.7 0.2 2.4 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|336254221|ref|YP_004597328.1| - 0.15 12.0 0.5 1.1 9.3 0.5 2.1 1 1 0 1 1 1 0 FAD-NAD(P)-binding FAD_binding_2 PF00890.24 gi|336254221|ref|YP_004597328.1| - 0.2 10.7 9.0 0.65 9.0 1.9 2.8 2 1 0 3 3 3 0 FAD binding domain Trp_halogenase PF04820.14 gi|336254221|ref|YP_004597328.1| - 0.23 10.2 0.9 0.4 9.5 0.9 1.3 1 0 0 1 1 1 0 Tryptophan halogenase HTH_20 PF12840.7 gi|336254222|ref|YP_004597329.1| - 0.11 12.6 1.8 1.7 8.7 1.8 2.1 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.6 gi|336254223|ref|YP_004597330.1| - 1.5e-13 50.1 0.1 2.8e-13 49.2 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|336254223|ref|YP_004597330.1| - 4.5e-12 45.6 1.5 1.2e-11 44.3 1.5 1.7 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|336254223|ref|YP_004597330.1| - 2.3e-08 33.8 0.1 6.1e-08 32.5 0.0 1.7 2 0 0 2 2 1 1 HTH domain MarR_2 PF12802.7 gi|336254223|ref|YP_004597330.1| - 4.2e-06 26.6 0.0 9.6e-06 25.4 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|336254223|ref|YP_004597330.1| - 5e-06 26.5 1.2 1.5e-05 25.0 0.0 2.3 3 1 0 3 3 2 1 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|336254223|ref|YP_004597330.1| - 1.3e-05 24.8 2.5 0.00018 21.1 0.1 2.6 3 0 0 3 3 3 1 DeoR-like helix-turn-helix domain Fe_dep_repress PF01325.19 gi|336254223|ref|YP_004597330.1| - 4e-05 23.7 0.0 8.1e-05 22.7 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_30 PF13556.6 gi|336254223|ref|YP_004597330.1| - 0.00023 20.9 0.1 0.00055 19.7 0.1 1.6 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain HTH_28 PF13518.6 gi|336254223|ref|YP_004597330.1| - 0.00034 20.7 0.0 0.0007 19.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|336254223|ref|YP_004597330.1| - 0.00061 19.6 0.0 0.0021 17.9 0.0 1.8 2 0 0 2 2 1 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|336254223|ref|YP_004597330.1| - 0.00091 19.0 0.1 0.0022 17.7 0.0 1.7 2 0 0 2 2 1 1 IclR helix-turn-helix domain MarR PF01047.22 gi|336254223|ref|YP_004597330.1| - 0.0012 18.7 0.0 0.0031 17.4 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_10 PF04967.12 gi|336254223|ref|YP_004597330.1| - 0.0019 17.9 0.1 0.0043 16.8 0.1 1.5 1 0 0 1 1 1 1 HTH DNA binding domain HTH_23 PF13384.6 gi|336254223|ref|YP_004597330.1| - 0.0027 17.4 0.1 0.0085 15.9 0.0 1.9 3 0 0 3 3 1 1 Homeodomain-like domain HTH_29 PF13551.6 gi|336254223|ref|YP_004597330.1| - 0.003 17.5 0.0 0.0056 16.7 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn helix Sigma70_r4_2 PF08281.12 gi|336254223|ref|YP_004597330.1| - 0.0051 16.4 0.1 0.014 15.0 0.1 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 AsnC_trans_reg PF01037.21 gi|336254223|ref|YP_004597330.1| - 0.01 15.7 0.2 0.02 14.9 0.2 1.4 1 0 0 1 1 1 0 Lrp/AsnC ligand binding domain Sigma70_r3 PF04539.16 gi|336254223|ref|YP_004597330.1| - 0.012 15.7 0.2 0.079 13.1 0.0 2.2 2 0 0 2 2 2 0 Sigma-70 region 3 GntR PF00392.21 gi|336254223|ref|YP_004597330.1| - 0.019 14.6 1.2 0.046 13.4 0.1 2.1 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_Tnp_ISL3 PF13542.6 gi|336254223|ref|YP_004597330.1| - 0.019 14.3 0.0 0.041 13.3 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_8 PF02954.19 gi|336254223|ref|YP_004597330.1| - 0.022 14.5 0.0 0.064 13.1 0.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family HTH_Mga PF08280.11 gi|336254223|ref|YP_004597330.1| - 0.029 14.4 0.0 0.067 13.2 0.0 1.5 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_1 PF00126.27 gi|336254223|ref|YP_004597330.1| - 0.034 14.1 0.0 0.089 12.8 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_38 PF13936.6 gi|336254223|ref|YP_004597330.1| - 0.044 13.5 0.0 0.11 12.3 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|336254223|ref|YP_004597330.1| - 0.045 13.7 0.2 0.1 12.6 0.0 1.7 2 0 0 2 2 1 0 Crp-like helix-turn-helix domain Rrf2 PF02082.20 gi|336254223|ref|YP_004597330.1| - 0.05 14.0 0.0 0.13 12.6 0.0 1.7 2 0 0 2 2 2 0 Transcriptional regulator HTH_17 PF12728.7 gi|336254223|ref|YP_004597330.1| - 0.07 13.3 0.1 0.27 11.4 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain MerR PF00376.23 gi|336254223|ref|YP_004597330.1| - 0.075 12.8 0.0 0.17 11.7 0.0 1.6 1 0 0 1 1 1 0 MerR family regulatory protein PaaX PF07848.12 gi|336254223|ref|YP_004597330.1| - 0.076 13.2 0.0 0.14 12.4 0.0 1.4 1 0 0 1 1 1 0 PaaX-like protein LexA_DNA_bind PF01726.16 gi|336254223|ref|YP_004597330.1| - 0.08 12.7 0.1 0.37 10.6 0.0 2.0 2 0 0 2 2 2 0 LexA DNA binding domain HTH_3 PF01381.22 gi|336254223|ref|YP_004597330.1| - 0.12 12.5 0.0 0.25 11.4 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix HTH_36 PF13730.6 gi|336254223|ref|YP_004597330.1| - 0.21 11.6 0.0 0.37 10.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Acetyltransf_1 PF00583.25 gi|336254224|ref|YP_004597331.1| - 4e-14 52.9 0.1 7.1e-14 52.1 0.1 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.7 gi|336254224|ref|YP_004597331.1| - 1.6e-08 34.8 0.0 2.9e-08 34.0 0.0 1.4 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|336254224|ref|YP_004597331.1| - 1.1e-07 32.1 0.0 2.6e-07 31.0 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|336254224|ref|YP_004597331.1| - 3e-05 24.0 0.0 6.3e-05 22.9 0.0 1.5 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|336254224|ref|YP_004597331.1| - 4.8e-05 23.4 0.1 0.0017 18.4 0.0 2.4 1 1 1 2 2 2 1 GCN5-related N-acetyl-transferase Acetyltransf_3 PF13302.7 gi|336254224|ref|YP_004597331.1| - 0.00028 21.5 0.1 0.00049 20.8 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|336254224|ref|YP_004597331.1| - 0.004 17.3 0.7 0.0098 16.0 0.7 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|336254224|ref|YP_004597331.1| - 0.018 15.1 0.0 0.054 13.6 0.0 1.9 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain PanZ PF12568.8 gi|336254224|ref|YP_004597331.1| - 0.15 11.8 1.1 0.42 10.4 0.6 1.9 1 1 1 2 2 2 0 Acetyltransferase (GNAT) domain, PanZ PDH PF02153.17 gi|336254225|ref|YP_004597332.1| - 6.3e-11 41.8 0.7 1.3e-09 37.5 0.7 2.1 1 1 0 1 1 1 1 Prephenate dehydrogenase F420_oxidored PF03807.17 gi|336254225|ref|YP_004597332.1| - 7.8e-05 23.2 5.2 0.00027 21.5 0.3 2.7 3 0 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent GFO_IDH_MocA PF01408.22 gi|336254225|ref|YP_004597332.1| - 0.02 15.7 2.5 0.02 15.7 0.3 2.2 2 1 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold Methyltransf_12 PF08242.12 gi|336254226|ref|YP_004597333.1| - 3e-11 43.9 0.0 6.9e-11 42.8 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|336254226|ref|YP_004597333.1| - 1.1e-09 38.4 0.0 1.8e-09 37.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Rsm22 PF09243.10 gi|336254226|ref|YP_004597333.1| - 6.2e-05 22.4 0.0 0.0001 21.7 0.0 1.2 1 0 0 1 1 1 1 Mitochondrial small ribosomal subunit Rsm22 Methyltransf_11 PF08241.12 gi|336254226|ref|YP_004597333.1| - 6.7e-05 23.5 0.1 0.00043 20.9 0.0 2.4 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|336254226|ref|YP_004597333.1| - 0.00026 21.6 0.0 0.00098 19.8 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|336254226|ref|YP_004597333.1| - 0.0012 18.7 0.0 0.017 14.9 0.0 2.6 2 1 0 2 2 2 1 Methyltransferase domain PBP_like_2 PF12849.7 gi|336254227|ref|YP_004597334.1| - 1.2e-07 31.7 0.1 2.2e-07 30.8 0.0 1.4 1 1 0 1 1 1 1 PBP superfamily domain SurE PF01975.17 gi|336254228|ref|YP_004597335.1| - 2.9e-48 164.2 0.1 3.6e-48 163.9 0.1 1.1 1 0 0 1 1 1 1 Survival protein SurE Rdx PF10262.9 gi|336254229|ref|YP_004597336.1| - 1.7e-18 66.5 0.0 2e-18 66.3 0.0 1.0 1 0 0 1 1 1 1 Rdx family EAP30 PF04157.16 gi|336254230|ref|YP_004597337.1| - 0.0037 16.6 0.2 0.0046 16.3 0.2 1.2 1 0 0 1 1 1 1 EAP30/Vps36 family DUF1328 PF07043.13 gi|336254231|ref|YP_004597338.1| - 1.3e-13 50.9 20.1 1.5e-13 50.7 20.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1328) Nop14 PF04147.12 gi|336254232|ref|YP_004597339.1| - 5.4 5.1 17.5 5.5 5.1 17.5 1.0 1 0 0 1 1 1 0 Nop14-like family TAT_signal PF10518.9 gi|336254233|ref|YP_004597340.1| - 0.00018 21.2 0.2 0.00027 20.6 0.2 1.3 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.9 gi|336254233|ref|YP_004597340.1| - 0.0066 15.8 0.7 0.015 14.6 0.7 1.6 1 0 0 1 1 1 1 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Ribosomal_S13_N PF08069.12 gi|336254234|ref|YP_004597341.1| - 1.5e-21 76.2 0.0 2.4e-21 75.5 0.0 1.3 1 0 0 1 1 1 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.22 gi|336254234|ref|YP_004597341.1| - 3.1e-15 56.1 0.4 4.7e-15 55.6 0.4 1.2 1 0 0 1 1 1 1 Ribosomal protein S15 DUF1465 PF07323.12 gi|336254234|ref|YP_004597341.1| - 0.074 12.9 0.3 0.13 12.1 0.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1465) NLBH PF05211.12 gi|336254236|ref|YP_004597343.1| - 0.0097 15.5 0.3 0.011 15.4 0.3 1.0 1 0 0 1 1 1 1 Neuraminyllactose-binding hemagglutinin precursor (NLBH) DUF4604 PF15377.6 gi|336254236|ref|YP_004597343.1| - 0.17 12.3 2.4 0.27 11.7 2.4 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4604) Ribosomal_S3Ae PF01015.18 gi|336254237|ref|YP_004597344.1| - 2.7e-60 203.4 0.2 3.3e-60 203.1 0.2 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family FlaG PF03646.15 gi|336254237|ref|YP_004597344.1| - 0.24 11.6 0.1 0.24 11.6 0.1 2.4 3 0 0 3 3 3 0 FlaG protein Acetyltransf_1 PF00583.25 gi|336254238|ref|YP_004597345.1| - 2.6e-07 30.9 0.0 3.4e-07 30.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|336254238|ref|YP_004597345.1| - 3.5e-07 30.2 0.0 4.3e-07 29.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|336254238|ref|YP_004597345.1| - 8.2e-07 29.4 0.0 1.1e-06 29.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|336254238|ref|YP_004597345.1| - 0.039 14.1 0.0 0.053 13.7 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain TruD PF01142.18 gi|336254239|ref|YP_004597346.1| - 1e-166 554.9 0.0 1.2e-166 554.7 0.0 1.0 1 0 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) EcoEI_R_C PF08463.10 gi|336254239|ref|YP_004597346.1| - 0.15 12.2 0.0 0.28 11.3 0.0 1.4 1 0 0 1 1 1 0 EcoEI R protein C-terminal Spore_III_AB PF09548.10 gi|336254239|ref|YP_004597346.1| - 0.17 12.0 0.6 0.59 10.2 0.3 1.8 2 0 0 2 2 2 0 Stage III sporulation protein AB (spore_III_AB) PTH2 PF01981.16 gi|336254240|ref|YP_004597347.1| - 1e-40 138.7 0.0 1.1e-40 138.6 0.0 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 DCD PF06559.11 gi|336254242|ref|YP_004597349.1| - 1.3e-16 60.3 0.0 3.5e-14 52.4 0.0 2.1 1 1 0 1 1 1 1 2'-deoxycytidine 5'-triphosphate deaminase (DCD) dUTPase PF00692.19 gi|336254242|ref|YP_004597349.1| - 1.7e-13 50.3 0.0 2.5e-13 49.8 0.0 1.2 1 0 0 1 1 1 1 dUTPase ThiP_synth PF10120.9 gi|336254244|ref|YP_004597351.1| - 1.2e-53 181.2 0.2 1.7e-53 180.6 0.2 1.3 1 0 0 1 1 1 1 Thiamine-phosphate synthase HTH_3 PF01381.22 gi|336254244|ref|YP_004597351.1| - 1.2e-07 31.6 0.0 2.8e-07 30.5 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix Sigma70_r4 PF04545.16 gi|336254244|ref|YP_004597351.1| - 0.0001 21.7 0.1 0.00026 20.4 0.1 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_31 PF13560.6 gi|336254244|ref|YP_004597351.1| - 0.00014 22.1 2.0 0.00029 21.1 0.4 2.4 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_37 PF13744.6 gi|336254244|ref|YP_004597351.1| - 0.00034 20.5 0.0 0.00069 19.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|336254244|ref|YP_004597351.1| - 0.00046 19.7 0.0 0.0015 18.1 0.0 1.9 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Sigma70_r4_2 PF08281.12 gi|336254244|ref|YP_004597351.1| - 0.00055 19.6 0.1 0.0014 18.3 0.1 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.6 gi|336254244|ref|YP_004597351.1| - 0.00076 19.2 0.0 0.0021 17.8 0.0 1.7 1 0 0 1 1 1 1 Homeodomain-like domain MarR_2 PF12802.7 gi|336254244|ref|YP_004597351.1| - 0.0011 18.8 0.3 0.0056 16.5 0.0 2.3 2 0 0 2 2 2 1 MarR family YdaS_antitoxin PF15943.5 gi|336254244|ref|YP_004597351.1| - 0.014 15.2 0.0 0.037 13.9 0.0 1.8 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT P22_Cro PF14549.6 gi|336254244|ref|YP_004597351.1| - 0.017 15.0 0.0 0.05 13.5 0.0 1.8 1 0 0 1 1 1 0 DNA-binding transcriptional regulator Cro HTH_19 PF12844.7 gi|336254244|ref|YP_004597351.1| - 0.037 14.1 0.0 0.078 13.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_IclR PF09339.10 gi|336254244|ref|YP_004597351.1| - 0.039 13.7 0.7 0.48 10.3 0.0 2.8 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_17 PF12728.7 gi|336254244|ref|YP_004597351.1| - 0.046 13.9 0.0 0.13 12.5 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_26 PF13443.6 gi|336254244|ref|YP_004597351.1| - 0.056 13.9 0.0 0.11 12.9 0.0 1.5 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain HTH_28 PF13518.6 gi|336254244|ref|YP_004597351.1| - 0.063 13.4 1.8 0.3 11.2 0.0 2.8 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_5 PF01022.20 gi|336254244|ref|YP_004597351.1| - 0.069 13.0 2.0 0.074 12.9 0.1 2.1 3 0 0 3 3 2 0 Bacterial regulatory protein, arsR family HTH_38 PF13936.6 gi|336254244|ref|YP_004597351.1| - 0.11 12.2 0.0 0.27 11.0 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HNF-1_N PF04814.13 gi|336254244|ref|YP_004597351.1| - 0.15 12.7 0.1 0.5 11.0 0.0 1.8 2 0 0 2 2 2 0 Hepatocyte nuclear factor 1 (HNF-1), N terminus HTH_7 PF02796.15 gi|336254244|ref|YP_004597351.1| - 0.15 12.2 0.0 0.35 11.0 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase Methyltransf_11 PF08241.12 gi|336254245|ref|YP_004597352.1| - 2.6e-10 40.8 0.0 9.3e-07 29.4 0.0 2.3 1 1 0 2 2 2 2 Methyltransferase domain Methyltransf_23 PF13489.6 gi|336254245|ref|YP_004597352.1| - 4.3e-10 39.7 0.0 5.3e-10 39.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|336254245|ref|YP_004597352.1| - 2.6e-09 37.7 0.0 7.5e-09 36.2 0.0 1.8 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|336254245|ref|YP_004597352.1| - 1.9e-08 34.3 0.0 3.5e-08 33.4 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|336254245|ref|YP_004597352.1| - 1.6e-07 32.0 0.0 3.1e-07 31.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|336254245|ref|YP_004597352.1| - 2e-05 24.5 0.0 3e-05 23.9 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) FtsJ PF01728.19 gi|336254245|ref|YP_004597352.1| - 0.00012 22.3 0.0 0.00018 21.6 0.0 1.3 1 1 0 1 1 1 1 FtsJ-like methyltransferase Ubie_methyltran PF01209.18 gi|336254245|ref|YP_004597352.1| - 0.0016 17.8 0.0 0.0024 17.3 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family GCD14 PF08704.10 gi|336254245|ref|YP_004597352.1| - 0.08 12.6 0.0 0.12 12.1 0.0 1.2 1 0 0 1 1 1 0 tRNA methyltransferase complex GCD14 subunit Methyltransf_4 PF02390.17 gi|336254245|ref|YP_004597352.1| - 0.13 11.7 0.0 0.2 11.1 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase Fibrillarin PF01269.17 gi|336254245|ref|YP_004597352.1| - 0.17 11.0 0.0 0.26 10.4 0.0 1.2 1 0 0 1 1 1 0 Fibrillarin 4HBT PF03061.22 gi|336254246|ref|YP_004597353.1| - 2.7e-14 53.3 0.1 4.1e-14 52.7 0.1 1.3 1 0 0 1 1 1 1 Thioesterase superfamily Acyl-ACP_TE PF01643.17 gi|336254246|ref|YP_004597353.1| - 2.9e-14 53.0 0.1 1.7e-06 27.5 0.0 2.0 1 1 1 2 2 2 2 Acyl-ACP thioesterase 4HBT_2 PF13279.6 gi|336254246|ref|YP_004597353.1| - 3.1e-13 50.3 0.0 3.9e-13 50.0 0.0 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily 4HBT_3 PF13622.6 gi|336254246|ref|YP_004597353.1| - 0.097 12.9 0.0 0.11 12.7 0.0 1.1 1 0 0 1 1 1 0 Thioesterase-like superfamily Abhydrolase_1 PF00561.20 gi|336254247|ref|YP_004597354.1| - 5.7e-31 108.1 0.1 7e-29 101.2 0.1 2.0 1 1 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|336254247|ref|YP_004597354.1| - 3.3e-19 69.1 0.1 7.1e-18 64.7 0.1 2.0 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 gi|336254247|ref|YP_004597354.1| - 3e-18 67.2 0.5 3.7e-18 67.0 0.5 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S15 PF02129.18 gi|336254247|ref|YP_004597354.1| - 0.0069 16.0 0.2 0.064 12.8 0.2 2.1 1 1 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_4 PF08386.10 gi|336254247|ref|YP_004597354.1| - 0.022 14.9 0.0 0.037 14.1 0.0 1.4 1 0 0 1 1 1 0 TAP-like protein FSH1 PF03959.13 gi|336254247|ref|YP_004597354.1| - 0.051 13.2 0.0 2 8.0 0.0 2.7 2 1 0 2 2 2 0 Serine hydrolase (FSH1) DUF1057 PF06342.12 gi|336254247|ref|YP_004597354.1| - 0.098 11.7 0.0 0.14 11.2 0.0 1.1 1 0 0 1 1 1 0 Alpha/beta hydrolase of unknown function (DUF1057) DLH PF01738.18 gi|336254247|ref|YP_004597354.1| - 0.18 11.3 0.0 2.9 7.4 0.0 2.1 2 0 0 2 2 2 0 Dienelactone hydrolase family Abhydrolase_2 PF02230.16 gi|336254247|ref|YP_004597354.1| - 0.2 11.5 0.1 1.3 8.8 0.0 2.2 3 0 0 3 3 3 0 Phospholipase/Carboxylesterase DUF5059 PF16502.5 gi|336254249|ref|YP_004597356.1| - 5.8e-89 299.5 55.8 5.2e-66 223.7 37.3 2.4 1 1 1 2 2 2 2 Domain of unknown function (DUF5059) Copper-bind PF00127.20 gi|336254249|ref|YP_004597356.1| - 1.2e-09 38.5 0.0 3e-09 37.2 0.0 1.7 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.6 gi|336254249|ref|YP_004597356.1| - 0.071 13.2 0.1 0.37 10.9 0.1 2.0 1 1 0 1 1 1 0 Cupredoxin-like domain AAA PF00004.29 gi|336254250|ref|YP_004597357.1| - 1.3e-79 265.1 0.0 6.3e-39 133.4 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|336254250|ref|YP_004597357.1| - 8.6e-11 41.8 0.0 0.00049 19.9 0.0 2.6 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_lid_3 PF17862.1 gi|336254250|ref|YP_004597357.1| - 5.4e-10 38.9 3.7 0.00041 20.1 0.2 2.7 2 0 0 2 2 2 2 AAA+ lid domain AAA_5 PF07728.14 gi|336254250|ref|YP_004597357.1| - 1.1e-09 38.4 0.0 0.00038 20.5 0.0 3.2 2 1 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_2 PF07724.14 gi|336254250|ref|YP_004597357.1| - 9.9e-09 35.5 0.0 0.00094 19.3 0.0 2.7 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_33 PF13671.6 gi|336254250|ref|YP_004597357.1| - 1e-08 35.5 0.0 0.0052 16.9 0.0 3.7 3 1 0 3 3 3 2 AAA domain AAA_16 PF13191.6 gi|336254250|ref|YP_004597357.1| - 1.2e-08 35.6 11.8 0.0033 17.8 0.7 5.3 4 2 0 4 4 3 2 AAA ATPase domain AAA_18 PF13238.6 gi|336254250|ref|YP_004597357.1| - 7.7e-08 33.0 0.0 0.011 16.3 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_22 PF13401.6 gi|336254250|ref|YP_004597357.1| - 1.8e-07 31.5 0.7 0.055 13.8 0.0 3.7 2 2 0 2 2 2 2 AAA domain AAA_14 PF13173.6 gi|336254250|ref|YP_004597357.1| - 2.5e-07 30.8 0.0 0.035 14.1 0.0 2.4 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.17 gi|336254250|ref|YP_004597357.1| - 2.7e-07 30.5 0.4 0.026 14.3 0.2 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein RNA_helicase PF00910.22 gi|336254250|ref|YP_004597357.1| - 1.8e-06 28.3 0.0 0.081 13.3 0.0 2.5 2 0 0 2 2 2 2 RNA helicase NACHT PF05729.12 gi|336254250|ref|YP_004597357.1| - 1.4e-05 25.1 0.6 2.9 7.8 0.0 4.3 2 2 2 4 4 4 1 NACHT domain Viral_helicase1 PF01443.18 gi|336254250|ref|YP_004597357.1| - 5e-05 23.2 0.0 0.088 12.5 0.0 2.2 2 0 0 2 2 2 2 Viral (Superfamily 1) RNA helicase AAA_11 PF13086.6 gi|336254250|ref|YP_004597357.1| - 5.7e-05 23.0 0.1 0.18 11.6 0.0 2.5 3 0 0 3 3 2 2 AAA domain AAA_28 PF13521.6 gi|336254250|ref|YP_004597357.1| - 7.6e-05 23.0 0.5 1.9 8.7 0.0 4.2 3 1 1 4 4 3 2 AAA domain AAA_17 PF13207.6 gi|336254250|ref|YP_004597357.1| - 9.1e-05 22.9 0.2 0.79 10.2 0.0 2.8 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.21 gi|336254250|ref|YP_004597357.1| - 0.0001 21.7 0.4 0.38 10.1 0.0 2.8 3 0 0 3 3 2 2 Magnesium chelatase, subunit ChlI Rad17 PF03215.15 gi|336254250|ref|YP_004597357.1| - 0.00013 21.9 0.0 0.48 10.3 0.0 2.3 2 0 0 2 2 2 2 Rad17 P-loop domain TIP49 PF06068.13 gi|336254250|ref|YP_004597357.1| - 0.00029 20.2 0.0 0.58 9.3 0.0 2.2 2 0 0 2 2 2 2 TIP49 P-loop domain AAA_3 PF07726.11 gi|336254250|ref|YP_004597357.1| - 0.00073 19.4 0.0 0.8 9.6 0.0 2.6 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.12 gi|336254250|ref|YP_004597357.1| - 0.00078 18.8 0.1 1.2 8.4 0.0 2.6 2 0 0 2 2 2 2 Zeta toxin AAA_24 PF13479.6 gi|336254250|ref|YP_004597357.1| - 0.0011 18.8 0.0 0.81 9.4 0.0 3.1 3 0 0 3 3 3 1 AAA domain ABC_tran PF00005.27 gi|336254250|ref|YP_004597357.1| - 0.0014 19.2 0.0 2.5 8.6 0.0 2.7 2 1 0 2 2 2 1 ABC transporter SKI PF01202.22 gi|336254250|ref|YP_004597357.1| - 0.0033 17.6 0.0 3 7.9 0.0 2.7 2 0 0 2 2 2 1 Shikimate kinase Hydin_ADK PF17213.3 gi|336254250|ref|YP_004597357.1| - 0.0049 17.2 0.2 2.2 8.5 0.0 2.4 2 0 0 2 2 2 1 Hydin Adenylate kinase-like domain TsaE PF02367.17 gi|336254250|ref|YP_004597357.1| - 0.0052 16.8 0.0 3 7.9 0.0 2.4 2 0 0 2 2 2 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE Cytidylate_kin PF02224.18 gi|336254250|ref|YP_004597357.1| - 0.008 15.9 0.2 3.6 7.3 0.0 2.6 3 0 0 3 3 2 1 Cytidylate kinase AAA_7 PF12775.7 gi|336254250|ref|YP_004597357.1| - 0.01 15.4 0.0 4.5 6.7 0.0 2.5 2 0 0 2 2 2 0 P-loop containing dynein motor region AAA_25 PF13481.6 gi|336254250|ref|YP_004597357.1| - 0.01 15.4 6.3 3.1 7.3 0.1 4.4 2 2 1 4 4 4 0 AAA domain Sigma54_activ_2 PF14532.6 gi|336254250|ref|YP_004597357.1| - 0.011 15.8 0.0 3 8.0 0.0 2.5 2 0 0 2 2 2 0 Sigma-54 interaction domain Bac_DnaA PF00308.18 gi|336254250|ref|YP_004597357.1| - 0.013 15.3 0.0 13 5.5 0.0 3.3 3 1 0 3 3 3 0 Bacterial dnaA protein Cytidylate_kin2 PF13189.6 gi|336254250|ref|YP_004597357.1| - 0.015 15.5 0.0 2.2 8.3 0.0 2.6 2 0 0 2 2 2 0 Cytidylate kinase-like family Sigma54_activat PF00158.26 gi|336254250|ref|YP_004597357.1| - 0.017 14.8 0.1 28 4.4 0.0 3.7 4 0 0 4 4 4 0 Sigma-54 interaction domain AAA_19 PF13245.6 gi|336254250|ref|YP_004597357.1| - 0.029 14.7 0.3 18 5.7 0.0 2.9 3 0 0 3 3 2 0 AAA domain ATPase_2 PF01637.18 gi|336254250|ref|YP_004597357.1| - 0.037 14.0 0.0 9.1 6.1 0.1 3.1 2 1 1 3 3 3 0 ATPase domain predominantly from Archaea GLTSCR1 PF15249.6 gi|336254250|ref|YP_004597357.1| - 0.062 13.7 0.8 0.43 11.0 0.0 2.5 3 0 0 3 3 2 0 Conserved region of unknown function on GLTSCR protein SMC_N PF02463.19 gi|336254250|ref|YP_004597357.1| - 0.12 11.8 0.6 38 3.6 0.0 3.7 4 0 0 4 4 4 0 RecF/RecN/SMC N terminal domain ATPase PF06745.13 gi|336254250|ref|YP_004597357.1| - 0.22 10.8 0.1 34 3.7 0.0 2.8 3 0 0 3 3 3 0 KaiC Adeno_IVa2 PF02456.15 gi|336254250|ref|YP_004597357.1| - 0.26 10.0 0.1 3.6 6.3 0.0 2.1 2 0 0 2 2 2 0 Adenovirus IVa2 protein Parvo_NS1 PF01057.17 gi|336254250|ref|YP_004597357.1| - 0.27 10.3 0.1 9.4 5.2 0.1 2.1 2 0 0 2 2 2 0 Parvovirus non-structural protein NS1 PhoH PF02562.16 gi|336254250|ref|YP_004597357.1| - 0.67 9.4 1.8 22 4.4 0.0 2.2 2 0 0 2 2 2 0 PhoH-like protein Thi4 PF01946.17 gi|336254251|ref|YP_004597358.1| - 2.2e-60 203.8 0.3 1.8e-48 164.8 0.2 2.2 2 0 0 2 2 2 2 Thi4 family FAD_oxidored PF12831.7 gi|336254251|ref|YP_004597358.1| - 2.9e-11 43.4 0.2 4.5e-11 42.7 0.2 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|336254251|ref|YP_004597358.1| - 5e-11 42.3 0.2 7.7e-08 31.8 0.2 2.3 1 1 1 2 2 2 2 FAD binding domain DAO PF01266.24 gi|336254251|ref|YP_004597358.1| - 3.4e-10 40.1 0.4 1.2e-05 25.0 0.2 2.3 1 1 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|336254251|ref|YP_004597358.1| - 1.5e-09 37.6 0.0 3.1e-09 36.5 0.0 1.5 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.6 gi|336254251|ref|YP_004597358.1| - 2.3e-08 34.2 0.1 4.8e-08 33.1 0.1 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 gi|336254251|ref|YP_004597358.1| - 3.2e-08 33.2 0.1 7.5e-08 31.9 0.0 1.7 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|336254251|ref|YP_004597358.1| - 5.2e-07 28.7 0.0 7.2e-07 28.3 0.0 1.2 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox_3 PF13738.6 gi|336254251|ref|YP_004597358.1| - 4.3e-05 22.9 0.0 8.7e-05 21.9 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|336254251|ref|YP_004597358.1| - 0.0002 20.5 0.1 0.0096 15.0 0.0 2.1 2 0 0 2 2 2 1 Lycopene cyclase protein Pyr_redox PF00070.27 gi|336254251|ref|YP_004597358.1| - 0.0002 21.8 0.7 0.00054 20.5 0.2 2.0 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 gi|336254251|ref|YP_004597358.1| - 0.00029 19.8 0.1 0.075 11.9 0.1 2.1 2 0 0 2 2 2 2 Tryptophan halogenase Shikimate_DH PF01488.20 gi|336254251|ref|YP_004597358.1| - 0.0007 19.7 0.0 0.06 13.4 0.0 2.3 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase Amino_oxidase PF01593.24 gi|336254251|ref|YP_004597358.1| - 0.00077 18.9 0.0 0.0028 17.0 0.0 1.8 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase GIDA PF01134.22 gi|336254251|ref|YP_004597358.1| - 0.0012 18.0 0.1 0.0021 17.2 0.1 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A NAD_binding_7 PF13241.6 gi|336254251|ref|YP_004597358.1| - 0.0016 18.8 0.0 0.0038 17.7 0.0 1.7 1 1 0 1 1 1 1 Putative NAD(P)-binding NAD_binding_9 PF13454.6 gi|336254251|ref|YP_004597358.1| - 0.0022 18.0 0.2 0.0067 16.4 0.1 1.8 2 0 0 2 2 2 1 FAD-NAD(P)-binding Glu_dehyd_C PF16912.5 gi|336254251|ref|YP_004597358.1| - 0.0033 16.9 0.1 0.75 9.2 0.1 2.5 2 0 0 2 2 2 1 Glucose dehydrogenase C-terminus TrkA_N PF02254.18 gi|336254251|ref|YP_004597358.1| - 0.025 14.9 0.3 0.056 13.7 0.1 1.8 2 0 0 2 2 2 0 TrkA-N domain NMO PF03060.15 gi|336254251|ref|YP_004597358.1| - 0.13 11.6 1.7 0.19 11.1 0.5 1.8 2 0 0 2 2 2 0 Nitronate monooxygenase Copper-bind PF00127.20 gi|336254253|ref|YP_004597360.1| - 3.6e-14 53.0 0.1 7.8e-14 51.9 0.1 1.5 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.6 gi|336254253|ref|YP_004597360.1| - 0.00092 19.3 0.0 0.39 10.9 0.0 2.1 2 0 0 2 2 2 2 Cupredoxin-like domain ERO1 PF04137.15 gi|336254253|ref|YP_004597360.1| - 0.25 10.5 0.0 0.29 10.3 0.0 1.0 1 0 0 1 1 1 0 Endoplasmic Reticulum Oxidoreductin 1 (ERO1) CDP-OH_P_transf PF01066.21 gi|336254254|ref|YP_004597361.1| - 1.2e-10 42.0 3.6 1.2e-10 42.0 3.6 2.8 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase HEAT_2 PF13646.6 gi|336254255|ref|YP_004597362.1| - 2.9e-20 72.4 7.7 3.3e-13 49.8 5.3 3.6 1 1 2 3 3 3 3 HEAT repeats HEAT_PBS PF03130.16 gi|336254255|ref|YP_004597362.1| - 2.2e-17 61.9 7.8 4.4e-06 26.9 0.3 6.0 5 0 0 5 5 5 4 PBS lyase HEAT-like repeat HEAT PF02985.22 gi|336254255|ref|YP_004597362.1| - 1.8e-06 27.7 0.2 0.062 13.6 0.1 3.3 3 0 0 3 3 3 2 HEAT repeat HEAT_EZ PF13513.6 gi|336254255|ref|YP_004597362.1| - 7.6e-06 26.3 3.7 0.011 16.2 0.1 3.4 2 1 1 3 3 3 2 HEAT-like repeat HsbA PF12296.8 gi|336254255|ref|YP_004597362.1| - 0.0017 18.7 0.0 3.1 8.2 0.0 3.3 3 0 0 3 3 3 2 Hydrophobic surface binding protein A AATF-Che1 PF13339.6 gi|336254255|ref|YP_004597362.1| - 0.0044 17.7 3.3 0.01 16.5 3.3 1.6 1 0 0 1 1 1 1 Apoptosis antagonizing transcription factor Arm PF00514.23 gi|336254255|ref|YP_004597362.1| - 0.019 15.0 0.0 1.7 8.8 0.0 3.1 1 1 2 3 3 3 0 Armadillo/beta-catenin-like repeat LPP PF04728.13 gi|336254255|ref|YP_004597362.1| - 0.049 14.0 3.3 2.6 8.5 1.0 3.3 2 1 0 2 2 2 0 Lipoprotein leucine-zipper FlxA PF14282.6 gi|336254255|ref|YP_004597362.1| - 0.087 12.8 2.2 0.27 11.2 1.7 2.0 1 1 1 2 2 2 0 FlxA-like protein NPV_P10 PF05531.12 gi|336254255|ref|YP_004597362.1| - 0.13 12.8 0.5 0.13 12.8 0.5 3.3 4 0 0 4 4 4 0 Nucleopolyhedrovirus P10 protein Cytochrom_B562 PF07361.11 gi|336254255|ref|YP_004597362.1| - 0.13 12.9 0.7 9.4 7.0 0.2 2.9 2 1 1 3 3 3 0 Cytochrome b562 FlaG PF03646.15 gi|336254255|ref|YP_004597362.1| - 1.9 8.7 9.2 7.3 6.8 1.8 2.7 2 0 0 2 2 2 0 FlaG protein Lactamase_B_3 PF13483.6 gi|336254256|ref|YP_004597363.1| - 2.8e-28 98.8 0.1 4.5e-28 98.2 0.1 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|336254256|ref|YP_004597363.1| - 4.3e-09 36.2 0.3 5.6e-09 35.8 0.3 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain PLDc_2 PF13091.6 gi|336254257|ref|YP_004597364.1| - 5.7e-40 136.3 0.0 7.9e-23 80.8 0.0 2.2 2 0 0 2 2 2 2 PLD-like domain PLDc PF00614.22 gi|336254257|ref|YP_004597364.1| - 1.9e-08 34.1 0.1 7.6e-06 25.9 0.1 2.6 2 0 0 2 2 2 2 Phospholipase D Active site motif Regulator_TrmB PF11495.8 gi|336254257|ref|YP_004597364.1| - 4.3e-06 26.1 0.1 0.073 12.2 0.1 2.4 2 0 0 2 2 2 2 Archaeal transcriptional regulator TrmB FAM83 PF07894.12 gi|336254257|ref|YP_004597364.1| - 0.015 14.9 0.0 0.21 11.1 0.0 2.1 2 0 0 2 2 2 0 FAM83 A-H Fe_dep_repress PF01325.19 gi|336254258|ref|YP_004597365.1| - 2.6e-17 62.8 0.1 5.7e-17 61.7 0.1 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repr_C PF02742.15 gi|336254258|ref|YP_004597365.1| - 1.5e-13 50.6 0.9 3.2e-13 49.6 0.5 1.7 2 0 0 2 2 2 1 Iron dependent repressor, metal binding and dimerisation domain HTH_Crp_2 PF13545.6 gi|336254258|ref|YP_004597365.1| - 0.00012 22.0 0.0 0.00018 21.4 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR PF01047.22 gi|336254258|ref|YP_004597365.1| - 0.00014 21.7 0.0 0.00023 21.0 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|336254258|ref|YP_004597365.1| - 0.00017 21.4 0.0 0.00035 20.4 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|336254258|ref|YP_004597365.1| - 0.00031 20.7 0.0 0.00073 19.5 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|336254258|ref|YP_004597365.1| - 0.00035 20.4 0.0 0.00058 19.7 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|336254258|ref|YP_004597365.1| - 0.00088 18.8 0.0 0.0016 18.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.6 gi|336254258|ref|YP_004597365.1| - 0.0011 19.4 0.0 0.0021 18.5 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain Rrf2 PF02082.20 gi|336254258|ref|YP_004597365.1| - 0.0037 17.6 0.0 0.0057 17.0 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator HTH_12 PF08461.10 gi|336254258|ref|YP_004597365.1| - 0.0054 16.6 0.2 0.011 15.6 0.2 1.6 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_5 PF01022.20 gi|336254258|ref|YP_004597365.1| - 0.018 14.9 0.0 0.15 11.9 0.0 2.1 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family GntR PF00392.21 gi|336254258|ref|YP_004597365.1| - 0.019 14.6 0.0 0.052 13.2 0.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family DS PF01916.17 gi|336254258|ref|YP_004597365.1| - 0.072 12.3 0.1 0.084 12.1 0.1 1.1 1 0 0 1 1 1 0 Deoxyhypusine synthase Rio2_N PF09202.11 gi|336254258|ref|YP_004597365.1| - 0.1 12.8 0.0 0.16 12.2 0.0 1.3 1 0 0 1 1 1 0 Rio2, N-terminal HTH_11 PF08279.12 gi|336254258|ref|YP_004597365.1| - 0.11 12.5 0.0 0.23 11.4 0.0 1.7 1 0 0 1 1 1 0 HTH domain DUF4423 PF14394.6 gi|336254258|ref|YP_004597365.1| - 0.11 12.2 0.0 0.18 11.5 0.0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4423) YkyA PF10368.9 gi|336254259|ref|YP_004597366.1| - 0.0022 17.7 7.8 0.0034 17.1 7.1 1.7 1 1 1 2 2 2 2 Putative cell-wall binding lipoprotein DUF4226 PF10774.9 gi|336254259|ref|YP_004597366.1| - 0.1 12.9 5.0 0.25 11.6 2.2 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF4226) hnRNP_Q_AcD PF18360.1 gi|336254259|ref|YP_004597366.1| - 0.21 11.6 1.3 1.2 9.2 0.2 2.6 2 1 1 3 3 3 0 Heterogeneous nuclear ribonucleoprotein Q acidic domain FUSC PF04632.12 gi|336254259|ref|YP_004597366.1| - 0.33 9.4 1.5 0.34 9.4 1.5 1.1 1 0 0 1 1 1 0 Fusaric acid resistance protein family DUF1690 PF07956.11 gi|336254259|ref|YP_004597366.1| - 0.41 11.1 4.7 1.3 9.4 1.6 2.2 2 0 0 2 2 2 0 Protein of Unknown function (DUF1690) Cdh1_DBD_1 PF18196.1 gi|336254259|ref|YP_004597366.1| - 1.9 8.8 6.1 4 7.8 0.8 2.1 1 1 1 2 2 2 0 Chromodomain helicase DNA-binding domain 1 UPF0051 PF01458.17 gi|336254260|ref|YP_004597367.1| - 2.4e-63 213.7 2.0 3e-63 213.4 2.0 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) UPF0051 PF01458.17 gi|336254261|ref|YP_004597368.1| - 1e-70 237.9 0.4 1.4e-70 237.4 0.4 1.2 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) ABC_tran PF00005.27 gi|336254262|ref|YP_004597369.1| - 1.3e-15 58.1 0.1 5.1e-15 56.2 0.1 1.8 1 1 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|336254262|ref|YP_004597369.1| - 4.1e-06 26.4 0.3 0.029 13.8 0.1 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA PF00004.29 gi|336254262|ref|YP_004597369.1| - 0.00017 22.0 0.1 0.17 12.3 0.0 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_21 PF13304.6 gi|336254262|ref|YP_004597369.1| - 0.0002 21.3 0.5 0.16 11.7 0.1 2.3 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_5 PF07728.14 gi|336254262|ref|YP_004597369.1| - 0.0028 17.7 0.6 2.3 8.2 0.0 2.6 2 1 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_29 PF13555.6 gi|336254262|ref|YP_004597369.1| - 0.0035 17.0 0.0 0.0066 16.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|336254262|ref|YP_004597369.1| - 0.039 14.2 0.1 0.92 9.8 0.0 2.3 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.15 gi|336254262|ref|YP_004597369.1| - 0.065 13.1 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_33 PF13671.6 gi|336254262|ref|YP_004597369.1| - 0.092 12.9 0.0 0.15 12.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|336254262|ref|YP_004597369.1| - 0.13 12.8 0.4 0.39 11.3 0.1 2.1 1 1 1 2 2 2 0 AAA domain Sortase PF04203.13 gi|336254262|ref|YP_004597369.1| - 0.13 12.0 0.0 0.21 11.4 0.0 1.3 1 0 0 1 1 1 0 Sortase domain AAA_15 PF13175.6 gi|336254262|ref|YP_004597369.1| - 0.15 11.7 1.2 0.51 10.0 0.0 1.9 1 1 0 2 2 2 0 AAA ATPase domain AAA_23 PF13476.6 gi|336254262|ref|YP_004597369.1| - 0.16 12.5 6.2 0.33 11.4 0.0 2.3 2 1 0 2 2 2 0 AAA domain DNA_pol_B PF00136.21 gi|336254263|ref|YP_004597370.1| - 9.7e-48 163.0 0.0 1.7e-47 162.2 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase family B DNA_pol_B_exo1 PF03104.19 gi|336254263|ref|YP_004597370.1| - 1e-28 100.5 0.0 1.8e-28 99.7 0.0 1.4 1 0 0 1 1 1 1 DNA polymerase family B, exonuclease domain DNA_pol_B_2 PF03175.13 gi|336254263|ref|YP_004597370.1| - 0.0079 15.1 0.0 0.088 11.6 0.0 2.1 2 0 0 2 2 2 1 DNA polymerase type B, organellar and viral DUF4131 PF13567.6 gi|336254265|ref|YP_004597372.1| - 0.057 13.1 0.0 0.077 12.6 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) AAA_23 PF13476.6 gi|336254267|ref|YP_004597374.1| - 2.9e-22 80.2 5.4 2.9e-22 80.2 5.4 7.5 1 1 2 3 3 1 1 AAA domain AAA_15 PF13175.6 gi|336254267|ref|YP_004597374.1| - 2e-17 64.0 0.0 3.6e-11 43.4 0.0 3.5 1 1 0 2 2 2 1 AAA ATPase domain AAA_13 PF13166.6 gi|336254267|ref|YP_004597374.1| - 2.3e-12 46.4 63.0 4.7e-08 32.2 4.3 5.1 2 1 3 5 5 5 4 AAA domain SMC_N PF02463.19 gi|336254267|ref|YP_004597374.1| - 2.4e-10 40.3 52.7 4.7e-09 36.0 52.7 2.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain Spc7 PF08317.11 gi|336254267|ref|YP_004597374.1| - 1.5e-08 33.9 111.1 0.0029 16.6 0.8 6.0 2 2 4 6 6 6 6 Spc7 kinetochore protein Atg14 PF10186.9 gi|336254267|ref|YP_004597374.1| - 1.5e-06 27.5 73.3 0.00023 20.4 10.6 5.2 2 2 3 5 5 5 3 Vacuolar sorting 38 and autophagy-related subunit 14 AAA_21 PF13304.6 gi|336254267|ref|YP_004597374.1| - 1.7e-06 28.1 3.9 0.0019 18.0 5.6 4.2 2 1 2 4 4 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|336254267|ref|YP_004597374.1| - 1.3e-05 24.9 0.0 2.5e-05 23.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain Laminin_II PF06009.12 gi|336254267|ref|YP_004597374.1| - 0.00017 21.7 58.6 0.0051 16.8 5.0 6.6 2 2 2 6 6 6 3 Laminin Domain II ABC_ATPase PF09818.9 gi|336254267|ref|YP_004597374.1| - 0.0002 20.3 0.6 0.056 12.2 0.1 2.6 2 0 0 2 2 2 1 Predicted ATPase of the ABC class AAA_27 PF13514.6 gi|336254267|ref|YP_004597374.1| - 0.00024 20.8 0.0 0.00024 20.8 0.0 6.2 4 2 4 8 8 8 1 AAA domain APG6_N PF17675.1 gi|336254267|ref|YP_004597374.1| - 0.00067 20.2 24.4 0.00067 20.2 24.4 8.7 1 1 6 7 7 5 1 Apg6 coiled-coil region CENP-F_leu_zip PF10473.9 gi|336254267|ref|YP_004597374.1| - 0.0064 16.5 6.4 0.0064 16.5 6.4 6.8 2 2 4 6 6 6 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 zf-C4H2 PF10146.9 gi|336254267|ref|YP_004597374.1| - 0.0064 16.8 1.4 0.0064 16.8 1.4 6.6 3 2 4 7 7 6 1 Zinc finger-containing protein Laminin_I PF06008.14 gi|336254267|ref|YP_004597374.1| - 0.007 16.1 12.0 0.007 16.1 12.0 7.1 2 2 3 6 6 6 4 Laminin Domain I DUF1664 PF07889.12 gi|336254267|ref|YP_004597374.1| - 0.014 15.4 50.9 0.027 14.5 2.3 7.0 2 2 5 7 7 7 0 Protein of unknown function (DUF1664) DUF3584 PF12128.8 gi|336254267|ref|YP_004597374.1| - 0.018 12.6 112.0 0.041 11.4 24.3 4.5 2 1 3 5 5 5 0 Protein of unknown function (DUF3584) Exonuc_VII_L PF02601.15 gi|336254267|ref|YP_004597374.1| - 0.02 14.5 52.6 0.031 13.9 6.1 4.4 1 1 2 3 3 2 0 Exonuclease VII, large subunit Viral_helicase1 PF01443.18 gi|336254267|ref|YP_004597374.1| - 0.025 14.3 0.3 0.16 11.6 0.0 2.3 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase TPR_MLP1_2 PF07926.12 gi|336254267|ref|YP_004597374.1| - 0.04 14.0 113.7 0.062 13.4 11.6 7.5 1 1 6 8 8 8 0 TPR/MLP1/MLP2-like protein FliJ PF02050.16 gi|336254267|ref|YP_004597374.1| - 0.048 13.9 0.5 0.048 13.9 0.5 7.8 2 2 7 9 9 8 0 Flagellar FliJ protein AAA_33 PF13671.6 gi|336254267|ref|YP_004597374.1| - 0.11 12.7 0.0 0.11 12.7 0.0 4.3 5 1 0 5 5 3 0 AAA domain FIVAR PF07554.13 gi|336254267|ref|YP_004597374.1| - 0.12 13.2 5.7 11 6.8 0.1 3.9 4 0 0 4 4 3 0 FIVAR domain MukB PF04310.12 gi|336254267|ref|YP_004597374.1| - 0.14 12.0 0.0 0.14 12.0 0.0 3.1 4 1 1 5 5 4 0 MukB N-terminal NACHT PF05729.12 gi|336254267|ref|YP_004597374.1| - 0.14 12.1 0.0 0.14 12.1 0.0 2.2 2 0 0 2 2 2 0 NACHT domain CEP63 PF17045.5 gi|336254267|ref|YP_004597374.1| - 0.68 9.8 97.3 0.011 15.7 19.7 4.5 2 2 3 5 5 5 0 Centrosomal protein of 63 kDa RepA_C PF04796.12 gi|336254267|ref|YP_004597374.1| - 1.4 8.9 6.4 0.17 11.9 0.4 2.4 2 1 0 2 2 2 0 Plasmid encoded RepA protein DUF4407 PF14362.6 gi|336254267|ref|YP_004597374.1| - 2.7 7.3 94.5 1.1 8.6 16.1 4.7 1 1 4 5 5 4 0 Domain of unknown function (DUF4407) YhzD PF14120.6 gi|336254267|ref|YP_004597374.1| - 3.6 7.8 0.0 3.6 7.8 0.0 5.1 6 0 0 6 6 3 0 YhzD-like protein GAS PF13851.6 gi|336254267|ref|YP_004597374.1| - 8 5.8 95.6 0.64 9.3 4.9 6.1 2 2 4 6 6 6 0 Growth-arrest specific micro-tubule binding FapA PF03961.13 gi|336254267|ref|YP_004597374.1| - 9.3 4.7 66.0 0.13 10.8 0.8 5.9 1 1 3 5 5 5 0 Flagellar Assembly Protein A Metallophos PF00149.28 gi|336254268|ref|YP_004597375.1| - 9.4e-12 45.9 0.2 1.5e-11 45.2 0.2 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|336254268|ref|YP_004597375.1| - 2.4e-11 44.1 0.1 4.7e-11 43.2 0.1 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Response_reg PF00072.24 gi|336254268|ref|YP_004597375.1| - 0.012 15.8 0.0 0.026 14.7 0.0 1.5 1 0 0 1 1 1 0 Response regulator receiver domain HTH_24 PF13412.6 gi|336254269|ref|YP_004597376.1| - 2e-06 27.3 0.0 2.8e-06 26.8 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|336254269|ref|YP_004597376.1| - 0.00058 19.7 0.0 0.00076 19.3 0.0 1.2 1 0 0 1 1 1 1 MarR family GntR PF00392.21 gi|336254269|ref|YP_004597376.1| - 0.0011 18.6 0.0 0.0016 18.0 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family TFIIE_alpha PF02002.17 gi|336254269|ref|YP_004597376.1| - 0.002 18.0 0.1 0.0027 17.5 0.1 1.3 1 1 0 1 1 1 1 TFIIE alpha subunit Sigma70_r4_2 PF08281.12 gi|336254269|ref|YP_004597376.1| - 0.004 16.8 0.0 0.0066 16.1 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_28 PF13518.6 gi|336254269|ref|YP_004597376.1| - 0.012 15.7 0.0 0.021 15.0 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|336254269|ref|YP_004597376.1| - 0.016 15.2 0.0 0.018 15.0 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain MarR PF01047.22 gi|336254269|ref|YP_004597376.1| - 0.079 12.9 0.0 0.11 12.4 0.0 1.2 1 0 0 1 1 1 0 MarR family RepL PF05732.11 gi|336254269|ref|YP_004597376.1| - 0.099 12.1 0.0 0.13 11.7 0.0 1.1 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) HTH_23 PF13384.6 gi|336254269|ref|YP_004597376.1| - 0.099 12.5 0.0 0.18 11.7 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain Rrf2 PF02082.20 gi|336254269|ref|YP_004597376.1| - 0.11 12.8 0.0 0.15 12.5 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator HTH_12 PF08461.10 gi|336254269|ref|YP_004597376.1| - 0.12 12.4 0.1 0.36 10.8 0.1 2.0 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain Sigma70_r4 PF04545.16 gi|336254269|ref|YP_004597376.1| - 0.14 11.7 0.1 0.39 10.3 0.1 1.8 1 1 1 2 2 2 0 Sigma-70, region 4 AAA PF00004.29 gi|336254270|ref|YP_004597377.1| - 5.7e-45 153.0 1.8 7.6e-45 152.6 0.1 2.1 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|336254270|ref|YP_004597377.1| - 1e-14 54.0 2.2 3.2e-14 52.4 2.2 1.9 1 0 0 1 1 1 1 AAA+ lid domain AAA_2 PF07724.14 gi|336254270|ref|YP_004597377.1| - 4.8e-09 36.6 0.0 1.7e-08 34.7 0.0 2.0 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.12 gi|336254270|ref|YP_004597377.1| - 6.4e-07 29.3 0.0 1.6e-06 27.9 0.0 1.6 2 0 0 2 2 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_22 PF13401.6 gi|336254270|ref|YP_004597377.1| - 4e-06 27.1 0.3 0.00085 19.6 0.0 2.8 1 1 1 2 2 2 1 AAA domain AAA_5 PF07728.14 gi|336254270|ref|YP_004597377.1| - 5.6e-06 26.4 1.9 1.9e-05 24.6 0.3 2.6 2 1 0 2 2 1 1 AAA domain (dynein-related subfamily) AAA_17 PF13207.6 gi|336254270|ref|YP_004597377.1| - 1.6e-05 25.4 3.6 0.017 15.6 0.0 2.8 2 1 0 2 2 2 2 AAA domain AAA_16 PF13191.6 gi|336254270|ref|YP_004597377.1| - 4e-05 24.1 6.6 0.00035 21.0 0.0 3.4 3 2 1 4 4 3 1 AAA ATPase domain GrpE PF01025.19 gi|336254270|ref|YP_004597377.1| - 9.1e-05 22.2 8.3 9.1e-05 22.2 8.3 2.2 3 0 0 3 3 1 1 GrpE AAA_18 PF13238.6 gi|336254270|ref|YP_004597377.1| - 0.00026 21.5 0.5 0.0092 16.5 0.0 3.0 2 1 0 3 3 2 1 AAA domain Prot_ATP_ID_OB PF16450.5 gi|336254270|ref|YP_004597377.1| - 0.00032 20.6 0.8 0.0007 19.5 0.2 2.0 2 0 0 2 2 1 1 Proteasomal ATPase OB C-terminal domain DUF815 PF05673.13 gi|336254270|ref|YP_004597377.1| - 0.00051 19.3 0.0 0.0011 18.2 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF815) TIP49 PF06068.13 gi|336254270|ref|YP_004597377.1| - 0.00084 18.6 1.0 0.0026 17.0 0.0 2.2 2 0 0 2 2 2 1 TIP49 P-loop domain Mg_chelatase PF01078.21 gi|336254270|ref|YP_004597377.1| - 0.0014 18.0 0.2 0.0046 16.4 0.1 1.8 1 1 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_14 PF13173.6 gi|336254270|ref|YP_004597377.1| - 0.0015 18.5 0.4 0.0098 15.9 0.0 2.2 2 1 0 2 2 2 1 AAA domain Sigma54_activat PF00158.26 gi|336254270|ref|YP_004597377.1| - 0.0016 18.2 0.1 0.045 13.5 0.0 2.6 2 1 0 2 2 2 1 Sigma-54 interaction domain RNA_helicase PF00910.22 gi|336254270|ref|YP_004597377.1| - 0.0034 17.8 0.0 0.0096 16.3 0.0 1.9 1 0 0 1 1 1 1 RNA helicase IstB_IS21 PF01695.17 gi|336254270|ref|YP_004597377.1| - 0.0035 17.1 0.0 0.0097 15.6 0.0 1.8 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_33 PF13671.6 gi|336254270|ref|YP_004597377.1| - 0.0067 16.6 1.2 0.023 14.9 0.0 2.4 2 2 0 3 3 1 1 AAA domain AAA_24 PF13479.6 gi|336254270|ref|YP_004597377.1| - 0.0078 16.0 0.1 0.0078 16.0 0.1 2.9 3 2 0 3 3 3 1 AAA domain NACHT PF05729.12 gi|336254270|ref|YP_004597377.1| - 0.011 15.7 0.1 0.12 12.3 0.0 2.4 1 1 0 2 2 2 0 NACHT domain TsaE PF02367.17 gi|336254270|ref|YP_004597377.1| - 0.011 15.7 0.0 0.024 14.7 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_3 PF07726.11 gi|336254270|ref|YP_004597377.1| - 0.013 15.4 0.2 0.059 13.2 0.0 2.3 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Atg14 PF10186.9 gi|336254270|ref|YP_004597377.1| - 0.014 14.5 1.4 0.021 13.9 1.4 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 AAA_7 PF12775.7 gi|336254270|ref|YP_004597377.1| - 0.017 14.6 1.0 0.03 13.8 0.0 2.0 2 1 0 2 2 1 0 P-loop containing dynein motor region AAA_28 PF13521.6 gi|336254270|ref|YP_004597377.1| - 0.018 15.3 0.0 0.018 15.3 0.0 2.7 3 0 0 3 3 2 0 AAA domain Fmp27_WPPW PF10359.9 gi|336254270|ref|YP_004597377.1| - 0.019 13.8 6.2 0.042 12.7 6.2 1.6 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain TniB PF05621.11 gi|336254270|ref|YP_004597377.1| - 0.024 14.0 0.0 1.7 8.0 0.0 2.6 1 1 0 2 2 2 0 Bacterial TniB protein Parvo_NS1 PF01057.17 gi|336254270|ref|YP_004597377.1| - 0.027 13.6 0.0 0.059 12.4 0.0 1.5 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 NB-ARC PF00931.22 gi|336254270|ref|YP_004597377.1| - 0.034 13.3 0.0 0.12 11.5 0.0 2.1 1 1 0 1 1 1 0 NB-ARC domain Fungal_TACC PF12709.7 gi|336254270|ref|YP_004597377.1| - 0.039 14.4 4.7 0.13 12.8 4.7 1.9 1 0 0 1 1 1 0 Fungal Transforming acidic coiled-coil (TACC) proteins SHE3 PF17078.5 gi|336254270|ref|YP_004597377.1| - 0.041 13.6 9.0 0.079 12.7 9.0 1.4 1 0 0 1 1 1 0 SWI5-dependent HO expression protein 3 CPT PF07931.12 gi|336254270|ref|YP_004597377.1| - 0.045 13.6 0.0 0.11 12.3 0.0 1.8 1 0 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein DUF2334 PF10096.9 gi|336254270|ref|YP_004597377.1| - 0.059 13.0 0.0 0.1 12.3 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2334) bZIP_1 PF00170.21 gi|336254270|ref|YP_004597377.1| - 0.085 13.0 13.7 0.19 11.8 2.9 2.8 1 1 1 2 2 2 0 bZIP transcription factor ADIP PF11559.8 gi|336254270|ref|YP_004597377.1| - 0.09 12.9 8.6 0.28 11.3 8.6 1.7 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding AAA_25 PF13481.6 gi|336254270|ref|YP_004597377.1| - 0.09 12.3 9.7 0.22 11.1 0.1 3.6 3 1 1 4 4 3 0 AAA domain ATPase PF06745.13 gi|336254270|ref|YP_004597377.1| - 0.1 11.9 9.7 0.34 10.2 0.0 3.7 3 1 0 4 4 3 0 KaiC Sigma54_activ_2 PF14532.6 gi|336254270|ref|YP_004597377.1| - 0.12 12.5 0.1 0.73 9.9 0.0 2.3 2 0 0 2 2 2 0 Sigma-54 interaction domain Occludin_ELL PF07303.13 gi|336254270|ref|YP_004597377.1| - 0.16 12.7 2.9 2.9 8.6 3.1 2.6 2 0 0 2 2 2 0 Occludin homology domain CLZ PF16526.5 gi|336254270|ref|YP_004597377.1| - 0.21 11.9 6.6 1.2 9.5 6.6 2.4 1 0 0 1 1 1 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels NTPase_1 PF03266.15 gi|336254270|ref|YP_004597377.1| - 0.24 11.3 4.6 1.9 8.4 0.0 3.5 3 1 1 4 4 4 0 NTPase ATPase_2 PF01637.18 gi|336254270|ref|YP_004597377.1| - 0.25 11.2 5.1 0.73 9.7 0.0 3.3 3 1 2 5 5 5 0 ATPase domain predominantly from Archaea ABC_tran PF00005.27 gi|336254270|ref|YP_004597377.1| - 0.29 11.7 4.9 0.35 11.4 0.0 2.7 2 1 0 2 2 1 0 ABC transporter GAS PF13851.6 gi|336254270|ref|YP_004597377.1| - 0.39 10.1 14.5 0.96 8.8 14.5 1.8 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding DUF4241 PF14025.6 gi|336254270|ref|YP_004597377.1| - 0.49 10.7 2.6 2.1 8.6 0.2 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF4241) Cep57_CLD_2 PF14197.6 gi|336254270|ref|YP_004597377.1| - 0.57 10.3 11.9 1.6 8.9 11.9 1.7 1 0 0 1 1 1 0 Centrosome localisation domain of PPC89 VSG_B PF13206.6 gi|336254270|ref|YP_004597377.1| - 0.73 9.0 5.6 0.19 10.9 0.3 2.2 2 0 0 2 2 2 0 Trypanosomal VSG domain AAA_11 PF13086.6 gi|336254270|ref|YP_004597377.1| - 1.1 8.9 9.5 0.43 10.3 0.1 2.5 1 1 1 2 2 2 0 AAA domain Swi5 PF07061.11 gi|336254270|ref|YP_004597377.1| - 1.9 8.7 7.1 6.6 6.9 6.1 2.6 1 1 0 1 1 1 0 Swi5 APG6_N PF17675.1 gi|336254270|ref|YP_004597377.1| - 1.9 9.0 15.8 0.72 10.4 12.2 2.1 2 0 0 2 2 1 0 Apg6 coiled-coil region SlyX PF04102.12 gi|336254270|ref|YP_004597377.1| - 2.1 9.0 9.8 8.7 7.1 8.2 2.8 2 1 0 2 2 1 0 SlyX DUF4407 PF14362.6 gi|336254270|ref|YP_004597377.1| - 2.3 7.5 8.0 0.78 9.0 4.8 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4407) Mgr1 PF08602.10 gi|336254270|ref|YP_004597377.1| - 2.4 6.9 5.7 1.2 7.8 3.6 1.6 2 0 0 2 2 2 0 Mgr1-like, i-AAA protease complex subunit YabA PF06156.13 gi|336254270|ref|YP_004597377.1| - 3.2 8.4 10.0 61 4.3 8.8 2.9 3 1 0 3 3 2 0 Initiation control protein YabA FlaC_arch PF05377.11 gi|336254270|ref|YP_004597377.1| - 3.5 8.1 8.7 42 4.7 0.1 3.4 2 1 0 2 2 2 0 Flagella accessory protein C (FlaC) DUF3987 PF13148.6 gi|336254270|ref|YP_004597377.1| - 7.7 5.4 10.1 2.2 7.2 5.5 2.3 3 0 0 3 3 3 0 Protein of unknown function (DUF3987) MAP17 PF15807.5 gi|336254271|ref|YP_004597378.1| - 0.43 10.8 1.6 0.46 10.7 1.6 1.2 1 0 0 1 1 1 0 Membrane-associated protein 117 kDa, PDZK1-interacting protein 1 DUF3742 PF12553.8 gi|336254271|ref|YP_004597378.1| - 0.47 10.6 2.4 0.46 10.6 2.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3742) GATase PF00117.28 gi|336254272|ref|YP_004597379.1| - 1.9e-35 122.4 0.0 2.3e-35 122.1 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|336254272|ref|YP_004597379.1| - 9.1e-14 51.7 2.8 2.4e-06 27.5 0.0 2.9 2 1 0 3 3 3 2 Peptidase C26 GATase_3 PF07685.14 gi|336254272|ref|YP_004597379.1| - 0.037 13.6 0.4 0.084 12.5 0.4 1.8 1 1 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain DUF3194 PF11419.8 gi|336254273|ref|YP_004597380.1| - 3.7e-05 24.0 0.4 5.6e-05 23.4 0.4 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF3194) Prefoldin_2 PF01920.20 gi|336254274|ref|YP_004597381.1| - 9.3e-27 93.1 18.4 1e-26 92.9 18.4 1.0 1 0 0 1 1 1 1 Prefoldin subunit FlaC_arch PF05377.11 gi|336254274|ref|YP_004597381.1| - 0.00025 21.3 4.4 0.00025 21.3 4.4 2.6 2 1 0 2 2 2 1 Flagella accessory protein C (FlaC) DUF5082 PF16888.5 gi|336254274|ref|YP_004597381.1| - 0.00033 20.9 11.2 0.00043 20.5 11.2 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF5082) ALIX_LYPXL_bnd PF13949.6 gi|336254274|ref|YP_004597381.1| - 0.00053 19.4 6.5 0.00063 19.1 6.5 1.0 1 0 0 1 1 1 1 ALIX V-shaped domain binding to HIV Prefoldin PF02996.17 gi|336254274|ref|YP_004597381.1| - 0.00068 19.5 16.6 0.032 14.1 16.6 2.6 1 1 0 1 1 1 1 Prefoldin subunit CLZ PF16526.5 gi|336254274|ref|YP_004597381.1| - 0.00079 19.7 3.8 0.00079 19.7 3.8 2.5 2 1 1 3 3 3 1 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Laminin_II PF06009.12 gi|336254274|ref|YP_004597381.1| - 0.0038 17.2 9.4 0.0051 16.8 9.4 1.2 1 0 0 1 1 1 1 Laminin Domain II DHR10 PF18595.1 gi|336254274|ref|YP_004597381.1| - 0.0074 16.3 6.4 0.0074 16.3 6.4 2.1 1 1 1 2 2 2 1 Designed helical repeat protein 10 domain XhlA PF10779.9 gi|336254274|ref|YP_004597381.1| - 0.01 16.0 1.6 0.01 16.0 1.6 2.3 2 0 0 2 2 2 0 Haemolysin XhlA CENP-F_leu_zip PF10473.9 gi|336254274|ref|YP_004597381.1| - 0.018 15.1 7.4 0.018 15.1 7.4 2.2 1 1 1 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF3584 PF12128.8 gi|336254274|ref|YP_004597381.1| - 0.018 12.6 8.3 0.023 12.2 8.3 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) DUF2379 PF09543.10 gi|336254274|ref|YP_004597381.1| - 0.022 15.0 2.1 0.022 15.0 2.1 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF2379) DUF5344 PF17279.2 gi|336254274|ref|YP_004597381.1| - 0.027 15.1 10.4 0.2 12.2 1.9 2.7 1 1 2 3 3 3 0 Family of unknown function (DUF5344) PAF-AH_p_II PF03403.13 gi|336254274|ref|YP_004597381.1| - 0.027 13.0 0.7 0.034 12.6 0.7 1.1 1 0 0 1 1 1 0 Platelet-activating factor acetylhydrolase, isoform II DUF4988 PF16378.5 gi|336254274|ref|YP_004597381.1| - 0.028 14.1 0.8 0.028 14.1 0.8 1.8 2 0 0 2 2 2 0 Domain of unknown function ERM PF00769.19 gi|336254274|ref|YP_004597381.1| - 0.046 13.5 15.6 0.068 13.0 15.6 1.2 1 0 0 1 1 1 0 Ezrin/radixin/moesin family Cep57_CLD PF14073.6 gi|336254274|ref|YP_004597381.1| - 0.054 13.5 15.4 0.28 11.2 4.8 2.1 2 0 0 2 2 2 0 Centrosome localisation domain of Cep57 WXG100 PF06013.12 gi|336254274|ref|YP_004597381.1| - 0.079 13.2 7.2 3.1 8.1 0.1 2.8 2 1 1 3 3 3 0 Proteins of 100 residues with WXG BRI3BP PF14965.6 gi|336254274|ref|YP_004597381.1| - 0.11 12.0 0.1 0.22 11.0 0.1 1.5 1 0 0 1 1 1 0 Negative regulator of p53/TP53 HMMR_N PF15905.5 gi|336254274|ref|YP_004597381.1| - 0.15 11.5 14.3 0.19 11.1 14.3 1.1 1 0 0 1 1 1 0 Hyaluronan mediated motility receptor N-terminal BRE1 PF08647.11 gi|336254274|ref|YP_004597381.1| - 0.19 11.8 15.0 0.86 9.7 4.7 2.1 1 1 1 2 2 2 0 BRE1 E3 ubiquitin ligase SASP PF00269.20 gi|336254274|ref|YP_004597381.1| - 0.25 11.4 3.4 0.57 10.3 3.4 1.9 1 1 0 1 1 1 0 Small, acid-soluble spore proteins, alpha/beta type Fijivirus_P9-2 PF06837.11 gi|336254274|ref|YP_004597381.1| - 0.26 10.7 0.4 0.33 10.4 0.4 1.1 1 0 0 1 1 1 0 Fijivirus P9-2 protein HemX PF04375.14 gi|336254274|ref|YP_004597381.1| - 0.32 10.2 16.4 0.23 10.7 1.7 2.0 1 1 1 2 2 2 0 HemX, putative uroporphyrinogen-III C-methyltransferase Sec34 PF04136.15 gi|336254274|ref|YP_004597381.1| - 0.33 10.8 11.9 0.095 12.6 1.8 2.1 1 1 1 2 2 2 0 Sec34-like family TPR_MLP1_2 PF07926.12 gi|336254274|ref|YP_004597381.1| - 0.36 10.9 20.7 1.3 9.1 7.0 2.1 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein TraF_2 PF13729.6 gi|336254274|ref|YP_004597381.1| - 0.36 10.1 10.8 0.045 13.1 1.2 2.0 1 1 1 2 2 2 0 F plasmid transfer operon, TraF, protein FapA PF03961.13 gi|336254274|ref|YP_004597381.1| - 0.61 8.6 6.0 0.88 8.1 6.0 1.2 1 0 0 1 1 1 0 Flagellar Assembly Protein A FUSC PF04632.12 gi|336254274|ref|YP_004597381.1| - 0.63 8.5 2.1 0.78 8.2 2.1 1.1 1 0 0 1 1 1 0 Fusaric acid resistance protein family DUF724 PF05266.14 gi|336254274|ref|YP_004597381.1| - 0.63 9.8 10.6 0.83 9.5 10.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF724) Exonuc_VII_L PF02601.15 gi|336254274|ref|YP_004597381.1| - 0.64 9.5 4.4 0.8 9.2 4.4 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit EzrA PF06160.12 gi|336254274|ref|YP_004597381.1| - 0.83 7.7 16.3 1.1 7.3 16.3 1.1 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA DUF3450 PF11932.8 gi|336254274|ref|YP_004597381.1| - 1 8.6 20.6 0.23 10.7 5.3 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) NPV_P10 PF05531.12 gi|336254274|ref|YP_004597381.1| - 1.4 9.5 9.9 0.81 10.2 1.1 2.2 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein Prominin PF05478.11 gi|336254274|ref|YP_004597381.1| - 1.7 6.5 5.9 2.1 6.2 5.9 1.1 1 0 0 1 1 1 0 Prominin Spc24 PF08286.11 gi|336254274|ref|YP_004597381.1| - 1.8 8.8 18.7 1 9.6 4.3 2.2 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 DUF1664 PF07889.12 gi|336254274|ref|YP_004597381.1| - 2.2 8.4 9.8 1.3 9.1 1.2 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) Spc7 PF08317.11 gi|336254274|ref|YP_004597381.1| - 2.6 6.8 19.3 1.9 7.3 6.6 2.0 1 1 0 2 2 2 0 Spc7 kinetochore protein DUF4164 PF13747.6 gi|336254274|ref|YP_004597381.1| - 2.6 8.4 16.1 0.3 11.4 2.8 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF4164) Syntaxin-6_N PF09177.11 gi|336254274|ref|YP_004597381.1| - 2.6 8.6 14.0 5.7 7.5 2.8 2.4 1 1 1 2 2 2 0 Syntaxin 6, N-terminal DUF4140 PF13600.6 gi|336254274|ref|YP_004597381.1| - 2.8 8.4 18.3 9.4e+02 0.3 18.3 2.2 1 1 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) Snapin_Pallidin PF14712.6 gi|336254274|ref|YP_004597381.1| - 3.2 8.2 13.3 2.4 8.6 2.9 2.2 2 0 0 2 2 2 0 Snapin/Pallidin Seryl_tRNA_N PF02403.22 gi|336254274|ref|YP_004597381.1| - 3.7 7.8 15.0 1.1 9.5 1.6 2.2 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain Med21 PF11221.8 gi|336254274|ref|YP_004597381.1| - 4 7.7 17.0 1.7 8.9 5.1 2.1 2 0 0 2 2 2 0 Subunit 21 of Mediator complex Fzo_mitofusin PF04799.13 gi|336254274|ref|YP_004597381.1| - 4 7.0 11.7 6.8 6.2 2.7 2.1 1 1 1 2 2 2 0 fzo-like conserved region DUF572 PF04502.13 gi|336254274|ref|YP_004597381.1| - 4.5 6.8 10.6 7.2 6.1 10.6 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF572) V-SNARE PF05008.15 gi|336254274|ref|YP_004597381.1| - 4.6 7.7 13.6 5 7.6 3.1 2.3 2 0 0 2 2 2 0 Vesicle transport v-SNARE protein N-terminus DUF2508 PF10704.9 gi|336254275|ref|YP_004597382.1| - 0.082 13.1 1.2 0.14 12.4 1.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2508) PAP2_3 PF14378.6 gi|336254276|ref|YP_004597383.1| - 2.1e-18 66.7 15.6 2.1e-18 66.7 15.6 1.8 2 0 0 2 2 2 1 PAP2 superfamily PAP2 PF01569.21 gi|336254276|ref|YP_004597383.1| - 2.5e-12 46.7 5.8 2.5e-12 46.7 5.8 2.7 2 1 1 3 3 3 1 PAP2 superfamily NADH_dh_m_C1 PF15088.6 gi|336254276|ref|YP_004597383.1| - 0.086 12.5 0.1 0.18 11.5 0.1 1.5 1 0 0 1 1 1 0 NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial DUF423 PF04241.15 gi|336254276|ref|YP_004597383.1| - 1 9.6 8.4 1 9.6 0.1 3.0 3 1 0 3 3 3 0 Protein of unknown function (DUF423) YfhO PF09586.10 gi|336254276|ref|YP_004597383.1| - 1.1 7.4 12.3 0.26 9.5 6.5 1.9 1 1 1 2 2 2 0 Bacterial membrane protein YfhO Pox_A14 PF05767.12 gi|336254276|ref|YP_004597383.1| - 5 7.3 11.8 0.35 11.0 1.1 3.1 2 2 1 3 3 3 0 Poxvirus virion envelope protein A14 SBP_bac_5 PF00496.22 gi|336254277|ref|YP_004597384.1| - 5.4e-46 157.3 0.0 4e-41 141.2 0.0 2.1 2 0 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 5 Middle Rpr2 PF04032.16 gi|336254278|ref|YP_004597385.1| - 6.3e-13 48.8 0.0 7.7e-13 48.6 0.0 1.1 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain DUF1771 PF08590.10 gi|336254278|ref|YP_004597385.1| - 0.038 14.4 0.6 0.056 13.8 0.6 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1771) zf-RING_7 PF02591.15 gi|336254278|ref|YP_004597385.1| - 0.057 13.6 2.4 0.9 9.8 0.4 2.5 1 1 1 2 2 2 0 C4-type zinc ribbon domain CRS1_YhbY PF01985.21 gi|336254279|ref|YP_004597386.1| - 1.2e-14 54.2 0.0 1.4e-14 54.0 0.0 1.0 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain MS_channel PF00924.18 gi|336254280|ref|YP_004597387.1| - 1.7e-47 161.7 0.1 1.7e-47 161.7 0.1 1.5 2 0 0 2 2 2 1 Mechanosensitive ion channel HAS-barrel PF09378.10 gi|336254280|ref|YP_004597387.1| - 0.068 13.3 0.5 0.35 11.1 0.1 2.3 3 0 0 3 3 3 0 HAS barrel domain DUF2092 PF09865.9 gi|336254281|ref|YP_004597388.1| - 1.3e-07 31.2 0.0 5.6e-07 29.1 0.0 2.0 1 1 0 1 1 1 1 Predicted periplasmic protein (DUF2092) LolA_like PF17131.4 gi|336254281|ref|YP_004597388.1| - 2.9e-06 27.2 1.1 3.6e-05 23.6 1.1 2.5 1 1 0 1 1 1 1 Outer membrane lipoprotein-sorting protein MucB_RseB PF03888.14 gi|336254281|ref|YP_004597388.1| - 0.0001 21.9 0.1 0.00084 18.9 0.0 2.1 2 0 0 2 2 2 1 MucB/RseB N-terminal domain EamA PF00892.20 gi|336254282|ref|YP_004597389.1| - 1.6e-41 141.7 35.2 6.1e-23 81.5 11.0 2.0 2 0 0 2 2 2 2 EamA-like transporter family TPT PF03151.16 gi|336254282|ref|YP_004597389.1| - 0.12 11.7 5.3 0.22 10.9 5.3 1.6 1 1 0 1 1 1 0 Triose-phosphate Transporter family DUF2270 PF10028.9 gi|336254283|ref|YP_004597390.1| - 1.6e-69 233.2 2.2 1.9e-69 232.9 2.2 1.0 1 0 0 1 1 1 1 Predicted integral membrane protein (DUF2270) PRT_C PF08372.10 gi|336254283|ref|YP_004597390.1| - 0.03 14.1 0.4 0.058 13.1 0.1 1.7 2 0 0 2 2 2 0 Plant phosphoribosyltransferase C-terminal Acyl_transf_3 PF01757.22 gi|336254283|ref|YP_004597390.1| - 0.033 13.3 1.9 0.048 12.7 0.1 1.9 2 0 0 2 2 2 0 Acyltransferase family Peripla_BP_2 PF01497.18 gi|336254284|ref|YP_004597391.1| - 1.9e-15 57.1 0.0 2.6e-15 56.7 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein TAT_signal PF10518.9 gi|336254284|ref|YP_004597391.1| - 0.93 9.4 4.5 1.5 8.8 4.5 1.3 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence SNF PF00209.18 gi|336254285|ref|YP_004597392.1| - 1.4e-50 172.5 21.7 2.1e-25 89.4 7.9 2.1 1 1 1 2 2 2 2 Sodium:neurotransmitter symporter family HTH_IclR PF09339.10 gi|336254286|ref|YP_004597393.1| - 0.00046 19.9 0.0 0.0046 16.7 0.0 2.3 2 0 0 2 2 2 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|336254286|ref|YP_004597393.1| - 0.00064 19.6 0.0 0.0015 18.4 0.0 1.6 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|336254286|ref|YP_004597393.1| - 0.022 14.6 0.0 0.04 13.8 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Pro-kuma_activ PF09286.11 gi|336254286|ref|YP_004597393.1| - 0.053 13.8 0.0 0.081 13.2 0.0 1.2 1 0 0 1 1 1 0 Pro-kumamolisin, activation domain HTH_45 PF14947.6 gi|336254286|ref|YP_004597393.1| - 0.08 12.9 0.0 0.15 12.1 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_5 PF01022.20 gi|336254286|ref|YP_004597393.1| - 0.084 12.7 0.0 0.15 11.9 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|336254286|ref|YP_004597393.1| - 0.099 12.7 0.1 0.23 11.5 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HemN_C PF06969.16 gi|336254286|ref|YP_004597393.1| - 0.12 12.5 0.2 0.52 10.4 0.1 2.0 2 0 0 2 2 2 0 HemN C-terminal domain Methyltransf_31 PF13847.6 gi|336254287|ref|YP_004597394.1| - 4.6e-16 59.0 0.0 6.1e-16 58.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|336254287|ref|YP_004597394.1| - 3.6e-12 46.8 0.3 5.7e-12 46.2 0.3 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|336254287|ref|YP_004597394.1| - 1.8e-11 44.7 0.0 3.3e-11 43.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|336254287|ref|YP_004597394.1| - 2.7e-10 40.3 0.0 4.1e-10 39.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|336254287|ref|YP_004597394.1| - 1.3e-09 38.6 0.1 2e-09 38.0 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|336254287|ref|YP_004597394.1| - 5.5e-07 29.3 0.0 8.8e-07 28.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_18 PF12847.7 gi|336254287|ref|YP_004597394.1| - 1.1e-06 28.7 0.0 5e-06 26.5 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_4 PF02390.17 gi|336254287|ref|YP_004597394.1| - 1.3e-05 24.7 0.0 2e-05 24.1 0.0 1.2 1 0 0 1 1 1 1 Putative methyltransferase Methyltransf_2 PF00891.18 gi|336254287|ref|YP_004597394.1| - 5.9e-05 22.4 0.1 8.8e-05 21.9 0.1 1.2 1 0 0 1 1 1 1 O-methyltransferase domain CMAS PF02353.20 gi|336254287|ref|YP_004597394.1| - 8e-05 22.1 0.0 0.00011 21.6 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase GCD14 PF08704.10 gi|336254287|ref|YP_004597394.1| - 8.5e-05 22.3 0.1 0.00012 21.8 0.1 1.1 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit PrmA PF06325.13 gi|336254287|ref|YP_004597394.1| - 0.00038 19.9 0.1 0.00056 19.4 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_24 PF13578.6 gi|336254287|ref|YP_004597394.1| - 0.00077 20.5 0.9 0.0021 19.0 0.7 1.8 2 0 0 2 2 1 1 Methyltransferase domain PCMT PF01135.19 gi|336254287|ref|YP_004597394.1| - 0.0012 18.7 0.0 0.0019 18.0 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Ubie_methyltran PF01209.18 gi|336254287|ref|YP_004597394.1| - 0.0018 17.6 0.0 0.003 16.9 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_32 PF13679.6 gi|336254287|ref|YP_004597394.1| - 0.003 17.6 0.0 0.0042 17.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.17 gi|336254287|ref|YP_004597394.1| - 0.005 16.0 0.0 0.0078 15.4 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase UPF0020 PF01170.18 gi|336254287|ref|YP_004597394.1| - 0.0079 15.9 0.0 0.012 15.3 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 MarR_2 PF12802.7 gi|336254287|ref|YP_004597394.1| - 0.019 14.9 0.0 0.13 12.2 0.0 2.1 2 0 0 2 2 2 0 MarR family HTH_20 PF12840.7 gi|336254287|ref|YP_004597394.1| - 0.099 12.7 0.1 0.38 10.8 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain HAP1_N PF04849.13 gi|336254288|ref|YP_004597395.1| - 0.00069 18.9 2.4 0.00083 18.7 2.4 1.1 1 0 0 1 1 1 1 HAP1 N-terminal conserved region DUF1465 PF07323.12 gi|336254288|ref|YP_004597395.1| - 0.0013 18.6 1.5 0.0021 17.9 0.3 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF1465) AAA_13 PF13166.6 gi|336254288|ref|YP_004597395.1| - 0.0054 15.4 2.9 0.0057 15.4 2.9 1.1 1 0 0 1 1 1 1 AAA domain BLOC1_2 PF10046.9 gi|336254288|ref|YP_004597395.1| - 0.0084 16.4 0.9 0.011 16.0 0.9 1.2 1 0 0 1 1 1 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 Arfaptin PF06456.13 gi|336254288|ref|YP_004597395.1| - 0.011 15.3 0.1 0.012 15.1 0.1 1.1 1 0 0 1 1 1 0 Arfaptin-like domain DUF1664 PF07889.12 gi|336254288|ref|YP_004597395.1| - 0.021 14.9 0.8 0.03 14.4 0.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) GIT_CC PF16559.5 gi|336254288|ref|YP_004597395.1| - 0.038 13.9 0.1 0.062 13.2 0.1 1.3 1 0 0 1 1 1 0 GIT coiled-coil Rho guanine nucleotide exchange factor DUF4988 PF16378.5 gi|336254288|ref|YP_004597395.1| - 0.048 13.3 1.0 0.075 12.7 0.8 1.4 1 1 0 1 1 1 0 Domain of unknown function PspB PF06667.12 gi|336254288|ref|YP_004597395.1| - 0.064 13.3 0.3 0.16 12.0 0.3 1.7 1 0 0 1 1 1 0 Phage shock protein B DUF16 PF01519.16 gi|336254288|ref|YP_004597395.1| - 0.076 13.5 2.1 0.1 13.1 2.0 1.3 1 1 0 1 1 1 0 Protein of unknown function DUF16 NPV_P10 PF05531.12 gi|336254288|ref|YP_004597395.1| - 0.084 13.3 0.7 0.11 13.0 0.7 1.4 1 0 0 1 1 1 0 Nucleopolyhedrovirus P10 protein Herpes_UL6 PF01763.16 gi|336254288|ref|YP_004597395.1| - 0.091 11.3 0.5 0.095 11.2 0.5 1.0 1 0 0 1 1 1 0 Herpesvirus UL6 like Tho2 PF11262.8 gi|336254288|ref|YP_004597395.1| - 0.091 11.9 0.5 0.1 11.8 0.5 1.1 1 0 0 1 1 1 0 Transcription factor/nuclear export subunit protein 2 CCDC85 PF10226.9 gi|336254288|ref|YP_004597395.1| - 0.16 11.7 4.8 0.28 10.8 4.8 1.5 1 1 0 1 1 1 0 CCDC85 family Spc24 PF08286.11 gi|336254288|ref|YP_004597395.1| - 0.21 11.8 5.2 0.32 11.2 5.2 1.4 1 1 0 1 1 1 0 Spc24 subunit of Ndc80 YabA PF06156.13 gi|336254288|ref|YP_004597395.1| - 0.28 11.8 2.0 0.33 11.6 2.0 1.4 1 1 0 1 1 1 0 Initiation control protein YabA DivIC PF04977.15 gi|336254288|ref|YP_004597395.1| - 0.3 10.9 6.1 0.046 13.5 2.2 1.7 2 0 0 2 2 2 0 Septum formation initiator SlyX PF04102.12 gi|336254288|ref|YP_004597395.1| - 2.1 9.0 10.2 1.8 9.2 6.2 2.4 1 1 1 2 2 2 0 SlyX PALP PF00291.25 gi|336254289|ref|YP_004597396.1| - 1.2e-61 208.7 1.6 1.4e-61 208.5 1.6 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme CoA_binding_2 PF13380.6 gi|336254291|ref|YP_004597398.1| - 1.9e-38 131.5 0.3 2.3e-38 131.3 0.3 1.1 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.19 gi|336254291|ref|YP_004597398.1| - 7.3e-08 33.0 0.0 1.2e-07 32.4 0.0 1.3 1 0 0 1 1 1 1 CoA binding domain TusA PF01206.17 gi|336254291|ref|YP_004597398.1| - 0.081 12.8 0.0 0.15 11.9 0.0 1.5 1 0 0 1 1 1 0 Sulfurtransferase TusA ATPase PF06745.13 gi|336254292|ref|YP_004597399.1| - 8.3e-09 35.1 0.0 1.2e-08 34.6 0.0 1.2 1 0 0 1 1 1 1 KaiC DUF835 PF05763.12 gi|336254292|ref|YP_004597399.1| - 1.2e-06 28.3 0.0 1.8e-06 27.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF835) PAXNEB PF05625.11 gi|336254292|ref|YP_004597399.1| - 0.0094 15.1 0.0 0.0098 15.1 0.0 1.1 1 0 0 1 1 1 1 PAXNEB protein DUF1477 PF07346.11 gi|336254292|ref|YP_004597399.1| - 0.035 14.3 0.1 0.079 13.2 0.1 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1477) IstB_IS21 PF01695.17 gi|336254292|ref|YP_004597399.1| - 0.1 12.3 0.0 0.27 10.9 0.0 1.6 2 0 0 2 2 2 0 IstB-like ATP binding protein UbiA PF01040.18 gi|336254293|ref|YP_004597400.1| - 1.4e-46 158.8 18.2 1.6e-46 158.6 18.2 1.0 1 0 0 1 1 1 1 UbiA prenyltransferase family HTH_IclR PF09339.10 gi|336254295|ref|YP_004597402.1| - 3.5e-06 26.7 0.0 5.4e-06 26.1 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|336254295|ref|YP_004597402.1| - 1.6e-05 24.8 0.0 3e-05 24.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|336254295|ref|YP_004597402.1| - 0.0018 17.8 0.3 0.0039 16.7 0.1 1.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_23 PF13384.6 gi|336254295|ref|YP_004597402.1| - 0.0027 17.5 0.1 0.0071 16.1 0.1 1.7 1 1 0 1 1 1 1 Homeodomain-like domain HTH_11 PF08279.12 gi|336254295|ref|YP_004597402.1| - 0.0036 17.2 0.5 0.0068 16.3 0.1 1.6 2 0 0 2 2 2 1 HTH domain TrmB PF01978.19 gi|336254295|ref|YP_004597402.1| - 0.013 15.4 0.0 0.021 14.7 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|336254295|ref|YP_004597402.1| - 0.017 15.0 0.1 0.025 14.5 0.1 1.2 1 0 0 1 1 1 0 MarR family HTH_28 PF13518.6 gi|336254295|ref|YP_004597402.1| - 0.023 14.8 0.1 0.052 13.7 0.1 1.7 1 1 1 2 2 2 0 Helix-turn-helix domain HTH_17 PF12728.7 gi|336254295|ref|YP_004597402.1| - 0.041 14.1 0.0 0.073 13.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain FUR PF01475.19 gi|336254295|ref|YP_004597402.1| - 0.044 13.9 0.0 0.061 13.5 0.0 1.3 1 0 0 1 1 1 0 Ferric uptake regulator family HTH_29 PF13551.6 gi|336254295|ref|YP_004597402.1| - 0.052 13.6 0.0 0.085 12.9 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix HTH_5 PF01022.20 gi|336254295|ref|YP_004597402.1| - 0.066 13.1 0.0 0.1 12.5 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.6 gi|336254295|ref|YP_004597402.1| - 0.075 13.0 0.0 0.12 12.4 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_27 PF13463.6 gi|336254295|ref|YP_004597402.1| - 0.095 13.2 0.0 0.2 12.1 0.0 1.6 2 0 0 2 2 1 0 Winged helix DNA-binding domain TetR_N PF00440.23 gi|336254295|ref|YP_004597402.1| - 0.1 12.4 0.0 0.17 11.7 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family UPF0122 PF04297.14 gi|336254295|ref|YP_004597402.1| - 0.12 12.6 0.0 0.21 11.8 0.0 1.4 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like HATPase_c_3 PF13589.6 gi|336254297|ref|YP_004597404.1| - 9.9e-18 64.3 0.0 1.9e-17 63.4 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.26 gi|336254297|ref|YP_004597404.1| - 0.00035 21.1 0.0 0.00094 19.7 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PaRep2b PF07775.11 gi|336254297|ref|YP_004597404.1| - 0.001 17.6 0.0 0.0017 16.9 0.0 1.2 1 0 0 1 1 1 1 PaRep2b protein Phage_integrase PF00589.22 gi|336254302|ref|YP_004597409.1| - 3.5e-08 33.4 0.0 6.7e-08 32.5 0.0 1.4 1 1 0 1 1 1 1 Phage integrase family Mrr_cat PF04471.12 gi|336254303|ref|YP_004597410.1| - 2.6e-06 27.4 0.2 1.3e-05 25.2 0.1 2.1 2 0 0 2 2 2 1 Restriction endonuclease HTH_9 PF08221.11 gi|336254303|ref|YP_004597410.1| - 0.11 12.6 0.0 0.56 10.3 0.0 2.1 2 0 0 2 2 2 0 RNA polymerase III subunit RPC82 helix-turn-helix domain N6_N4_Mtase PF01555.18 gi|336254304|ref|YP_004597411.1| - 7.9e-35 120.6 0.0 1e-34 120.3 0.0 1.1 1 0 0 1 1 1 1 DNA methylase Transglut_core2 PF13369.6 gi|336254304|ref|YP_004597411.1| - 0.13 11.8 0.0 0.23 11.0 0.0 1.3 1 0 0 1 1 1 0 Transglutaminase-like superfamily PapJ PF14855.6 gi|336254305|ref|YP_004597412.1| - 0.029 14.0 0.1 0.41 10.3 0.0 2.0 1 1 1 2 2 2 0 Pilus-assembly fibrillin subunit, chaperone HTH_IclR PF09339.10 gi|336254305|ref|YP_004597412.1| - 0.08 12.8 0.0 0.18 11.7 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|336254307|ref|YP_004597414.1| - 5.8e-07 29.0 0.0 3.4e-06 26.5 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_23 PF13384.6 gi|336254307|ref|YP_004597414.1| - 5.5e-06 26.0 0.1 2e-05 24.2 0.0 1.9 2 0 0 2 2 2 1 Homeodomain-like domain HTH_29 PF13551.6 gi|336254307|ref|YP_004597414.1| - 1.1e-05 25.4 0.0 3.2e-05 23.8 0.0 1.8 1 0 0 1 1 1 1 Winged helix-turn helix HTH_28 PF13518.6 gi|336254307|ref|YP_004597414.1| - 0.0013 18.8 0.0 0.003 17.7 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|336254307|ref|YP_004597414.1| - 0.0016 18.3 0.0 0.0057 16.5 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_45 PF14947.6 gi|336254307|ref|YP_004597414.1| - 0.0039 17.1 0.0 0.0083 16.1 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_11 PF08279.12 gi|336254307|ref|YP_004597414.1| - 0.014 15.4 0.0 0.028 14.4 0.0 1.4 1 0 0 1 1 1 0 HTH domain HTH_20 PF12840.7 gi|336254307|ref|YP_004597414.1| - 0.054 13.6 0.0 0.13 12.3 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain TrmB PF01978.19 gi|336254307|ref|YP_004597414.1| - 0.11 12.3 0.0 0.23 11.3 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB FaeA PF04703.12 gi|336254307|ref|YP_004597414.1| - 0.13 12.7 0.1 0.59 10.5 0.0 2.1 2 0 0 2 2 2 0 FaeA-like protein Phage_integrase PF00589.22 gi|336254308|ref|YP_004597415.1| - 7.2e-07 29.2 0.0 2.9e-06 27.2 0.0 2.0 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.6 gi|336254308|ref|YP_004597415.1| - 0.066 13.7 2.6 40 4.8 0.0 3.9 4 1 1 5 5 5 0 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.17 gi|336254308|ref|YP_004597415.1| - 0.082 13.2 0.3 2.6 8.4 0.0 3.0 3 0 0 3 3 3 0 Phage integrase, N-terminal SAM-like domain Phage_integrase PF00589.22 gi|336254309|ref|YP_004597416.1| - 3.7e-06 26.8 0.1 4.6e-05 23.3 0.1 2.2 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.17 gi|336254309|ref|YP_004597416.1| - 6.3e-06 26.4 0.3 2.6e-05 24.4 0.1 2.2 1 1 1 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 gi|336254309|ref|YP_004597416.1| - 3.1e-05 24.3 0.1 0.00067 20.1 0.1 2.5 1 1 1 2 2 2 2 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 gi|336254309|ref|YP_004597416.1| - 0.00014 22.1 0.0 0.00035 20.8 0.0 1.7 1 0 0 1 1 1 1 Phage integrase SAM-like domain Usp PF00582.26 gi|336254312|ref|YP_004597419.1| - 1.4e-34 119.6 2.7 1.5e-34 119.5 2.7 1.0 1 0 0 1 1 1 1 Universal stress protein family AP_endonuc_2 PF01261.24 gi|336254312|ref|YP_004597419.1| - 0.0081 15.6 0.3 0.0099 15.3 0.3 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel PTS_IIB PF02302.17 gi|336254312|ref|YP_004597419.1| - 0.051 14.3 0.1 0.12 13.0 0.0 1.8 2 0 0 2 2 2 0 PTS system, Lactose/Cellobiose specific IIB subunit Nop14 PF04147.12 gi|336254314|ref|YP_004597421.1| - 8.4 4.5 13.4 13 3.8 13.4 1.3 1 0 0 1 1 1 0 Nop14-like family BUD22 PF09073.10 gi|336254316|ref|YP_004597423.1| - 2.4 7.4 50.8 3.4 6.9 50.8 1.3 1 0 0 1 1 1 0 BUD22 Lin-8 PF03353.15 gi|336254316|ref|YP_004597423.1| - 2.7 7.5 19.5 2.9 7.3 19.5 1.2 1 0 0 1 1 1 0 Ras-mediated vulval-induction antagonist PQQ_2 PF13360.6 gi|336254318|ref|YP_004597425.1| - 5.6e-13 49.0 8.6 2.6e-07 30.5 1.2 2.6 1 1 1 2 2 2 2 PQQ-like domain PQQ PF01011.21 gi|336254318|ref|YP_004597425.1| - 7.6e-09 35.1 6.2 7.4e-05 22.5 0.1 4.7 5 0 0 5 5 5 2 PQQ enzyme repeat PQQ_3 PF13570.6 gi|336254318|ref|YP_004597425.1| - 1e-06 29.0 21.2 0.04 14.4 0.1 7.3 8 0 0 8 8 8 3 PQQ-like domain DUF3209 PF11483.8 gi|336254319|ref|YP_004597426.1| - 1.5e-55 187.0 2.7 1.6e-55 186.8 2.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3209) IcmF-related PF06761.12 gi|336254319|ref|YP_004597426.1| - 0.028 13.9 0.0 0.033 13.7 0.0 1.0 1 0 0 1 1 1 0 Intracellular multiplication and human macrophage-killing CbiX PF01903.17 gi|336254320|ref|YP_004597427.1| - 6.3e-42 142.3 0.0 1.2e-19 70.6 0.1 2.6 3 0 0 3 3 3 2 CbiX 2Fe-2S_thioredx PF01257.19 gi|336254320|ref|YP_004597427.1| - 2.4e-08 33.9 0.1 4.3e-08 33.1 0.1 1.3 1 0 0 1 1 1 1 Thioredoxin-like [2Fe-2S] ferredoxin CbiK PF06180.11 gi|336254320|ref|YP_004597427.1| - 0.00014 21.3 0.0 0.19 11.0 0.0 2.1 2 0 0 2 2 2 2 Cobalt chelatase (CbiK) Suc_Fer-like PF06999.12 gi|336254320|ref|YP_004597427.1| - 0.00076 19.4 0.0 0.0019 18.1 0.0 1.7 1 1 0 2 2 2 1 Sucrase/ferredoxin-like ETF_alpha PF00766.19 gi|336254320|ref|YP_004597427.1| - 0.16 12.0 0.0 10 6.2 0.0 2.9 2 1 1 3 3 3 0 Electron transfer flavoprotein FAD-binding domain DUF1636 PF07845.11 gi|336254320|ref|YP_004597427.1| - 0.18 12.2 0.5 8.1 6.9 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1636) Castor1_N PF18700.1 gi|336254321|ref|YP_004597428.1| - 0.27 11.1 0.7 0.46 10.4 0.7 1.3 1 0 0 1 1 1 0 Cytosolic arginine sensor for mTORC1 subunit 1 N-terminal domain Fer4_15 PF13459.6 gi|336254322|ref|YP_004597429.1| - 5.8e-18 65.4 8.9 7.3e-18 65.1 8.9 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|336254322|ref|YP_004597429.1| - 0.0019 18.7 5.9 0.0037 17.8 5.9 1.6 1 1 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_19 PF06902.11 gi|336254322|ref|YP_004597429.1| - 0.0086 16.1 0.2 1.8 8.7 0.1 2.1 1 1 1 2 2 2 2 Divergent 4Fe-4S mono-cluster Fer4_6 PF12837.7 gi|336254322|ref|YP_004597429.1| - 1.4 9.1 7.2 8 6.7 0.1 3.5 4 0 0 4 4 4 0 4Fe-4S binding domain TP_methylase PF00590.20 gi|336254323|ref|YP_004597430.1| - 1.6e-39 136.1 0.2 1.9e-39 135.8 0.2 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Macoilin PF09726.9 gi|336254323|ref|YP_004597430.1| - 0.14 10.7 7.7 0.17 10.5 7.7 1.1 1 0 0 1 1 1 0 Macoilin family SPX PF03105.19 gi|336254323|ref|YP_004597430.1| - 0.67 9.8 5.6 0.74 9.7 5.6 1.1 1 0 0 1 1 1 0 SPX domain Apt1 PF10351.9 gi|336254323|ref|YP_004597430.1| - 0.87 8.4 9.7 1 8.1 9.7 1.1 1 0 0 1 1 1 0 Golgi-body localisation protein domain TP_methylase PF00590.20 gi|336254324|ref|YP_004597431.1| - 8.8e-45 153.3 0.3 1.1e-44 153.0 0.3 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases CbiG_N PF11760.8 gi|336254325|ref|YP_004597432.1| - 4.1e-27 94.0 0.0 1.4e-26 92.3 0.0 2.0 1 0 0 1 1 1 1 Cobalamin synthesis G N-terminal CbiG_C PF01890.16 gi|336254325|ref|YP_004597432.1| - 1.1e-22 80.8 0.1 2.6e-22 79.5 0.0 1.7 2 0 0 2 2 2 1 Cobalamin synthesis G C-terminus AIRS PF00586.24 gi|336254325|ref|YP_004597432.1| - 0.00084 20.0 1.4 0.0026 18.4 1.4 1.9 1 1 0 1 1 1 1 AIR synthase related protein, N-terminal domain PQQ_2 PF13360.6 gi|336254326|ref|YP_004597433.1| - 1.6e-65 221.0 15.3 2.3e-41 141.9 1.7 3.5 1 1 2 3 3 3 3 PQQ-like domain PQQ_3 PF13570.6 gi|336254326|ref|YP_004597433.1| - 1.7e-58 193.7 44.8 5e-12 45.9 0.4 9.4 10 0 0 10 10 10 8 PQQ-like domain PQQ PF01011.21 gi|336254326|ref|YP_004597433.1| - 5.4e-42 139.8 14.9 2.9e-09 36.4 0.0 8.5 8 0 0 8 8 8 7 PQQ enzyme repeat Me-amine-dh_H PF06433.11 gi|336254326|ref|YP_004597433.1| - 0.023 13.5 0.1 2 7.2 0.0 3.0 2 1 0 3 3 3 0 Methylamine dehydrogenase heavy chain (MADH) DUF4905 PF16248.5 gi|336254326|ref|YP_004597433.1| - 0.057 13.3 0.1 13 5.7 0.0 3.6 4 0 0 4 4 4 0 Domain of unknown function (DUF4905) PGF-CTERM PF18204.1 gi|336254326|ref|YP_004597433.1| - 0.095 12.7 0.4 0.18 11.8 0.4 1.5 1 0 0 1 1 1 0 PGF-CTERM motif Glyco_hyd_101C PF17451.2 gi|336254326|ref|YP_004597433.1| - 4.6 7.6 6.9 64 3.9 0.3 4.6 4 1 1 6 6 6 0 Glycosyl hydrolase 101 beta sandwich domain Wtap PF17098.5 gi|336254327|ref|YP_004597434.1| - 0.74 9.7 4.0 13 5.7 0.0 2.6 2 0 0 2 2 2 0 WTAP/Mum2p family RNase_II_C_S1 PF18614.1 gi|336254329|ref|YP_004597436.1| - 0.32 11.0 5.8 0.16 11.9 0.7 2.4 2 1 1 3 3 3 0 RNase II-type exonuclease C-terminal S1 domain CHD5 PF04420.14 gi|336254331|ref|YP_004597438.1| - 0.21 11.5 0.3 0.4 10.5 0.3 1.5 1 0 0 1 1 1 0 CHD5-like protein Phage_holin_2_2 PF10746.9 gi|336254331|ref|YP_004597438.1| - 1.1 8.9 3.6 0.58 9.9 0.5 2.1 2 0 0 2 2 2 0 Phage holin T7 family, holin superfamily II LapA_dom PF06305.11 gi|336254331|ref|YP_004597438.1| - 1.2 9.1 0.0 1.2 9.1 0.0 3.3 3 0 0 3 3 3 0 Lipopolysaccharide assembly protein A domain T2SSF PF00482.23 gi|336254331|ref|YP_004597438.1| - 2.1 8.3 20.5 0.055 13.4 2.5 3.9 4 1 1 5 5 5 0 Type II secretion system (T2SS), protein F T2SSE PF00437.20 gi|336254332|ref|YP_004597439.1| - 5e-35 120.9 0.0 8.3e-35 120.2 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein ABC_tran PF00005.27 gi|336254332|ref|YP_004597439.1| - 0.0003 21.3 0.0 0.00054 20.5 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_16 PF13191.6 gi|336254332|ref|YP_004597439.1| - 0.0049 17.3 0.5 0.032 14.6 0.1 2.3 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|336254332|ref|YP_004597439.1| - 0.0088 15.8 0.1 0.024 14.4 0.1 1.8 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.6 gi|336254332|ref|YP_004597439.1| - 0.024 14.2 0.2 0.12 11.9 0.1 2.3 3 0 0 3 3 3 0 AAA domain cobW PF02492.19 gi|336254332|ref|YP_004597439.1| - 0.039 13.5 0.0 0.072 12.7 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Zeta_toxin PF06414.12 gi|336254332|ref|YP_004597439.1| - 0.059 12.7 0.0 0.11 11.7 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin TrwB_AAD_bind PF10412.9 gi|336254332|ref|YP_004597439.1| - 0.07 12.0 0.0 0.11 11.4 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_14 PF13173.6 gi|336254332|ref|YP_004597439.1| - 0.087 12.9 0.0 0.18 11.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain DUF1449 PF07290.11 gi|336254333|ref|YP_004597440.1| - 0.046 13.3 0.0 0.064 12.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1449) SecE PF00584.20 gi|336254333|ref|YP_004597440.1| - 0.22 11.4 0.4 0.43 10.5 0.4 1.5 1 0 0 1 1 1 0 SecE/Sec61-gamma subunits of protein translocation complex Dynamitin PF04912.14 gi|336254334|ref|YP_004597441.1| - 0.0012 18.3 2.4 0.17 11.1 0.1 2.2 1 1 1 2 2 2 2 Dynamitin BLOC1_2 PF10046.9 gi|336254334|ref|YP_004597441.1| - 0.0014 18.9 1.2 0.076 13.3 0.1 2.4 1 1 1 2 2 2 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 ABC_tran_CTD PF16326.5 gi|336254334|ref|YP_004597441.1| - 0.003 17.8 1.5 0.051 13.8 0.7 2.5 1 1 1 2 2 2 2 ABC transporter C-terminal domain Lebercilin PF15619.6 gi|336254334|ref|YP_004597441.1| - 0.004 16.8 0.3 0.006 16.3 0.3 1.3 1 0 0 1 1 1 1 Ciliary protein causing Leber congenital amaurosis disease Tropomyosin_1 PF12718.7 gi|336254334|ref|YP_004597441.1| - 0.0049 17.0 2.4 0.0076 16.4 1.7 1.6 1 1 0 1 1 1 1 Tropomyosin like Cep57_CLD_2 PF14197.6 gi|336254334|ref|YP_004597441.1| - 0.007 16.4 4.9 0.022 14.9 3.1 2.2 2 1 0 2 2 2 1 Centrosome localisation domain of PPC89 XhlA PF10779.9 gi|336254334|ref|YP_004597441.1| - 0.0076 16.4 5.9 0.25 11.6 0.3 3.2 2 1 1 3 3 3 1 Haemolysin XhlA FPP PF05911.11 gi|336254334|ref|YP_004597441.1| - 0.0081 14.4 0.0 0.01 14.1 0.0 1.1 1 0 0 1 1 1 1 Filament-like plant protein, long coiled-coil FlaC_arch PF05377.11 gi|336254334|ref|YP_004597441.1| - 0.009 16.4 0.3 9.7 6.7 0.0 3.1 2 1 1 3 3 3 0 Flagella accessory protein C (FlaC) HSBP1 PF06825.12 gi|336254334|ref|YP_004597441.1| - 0.01 15.7 0.9 4.7 7.2 0.0 2.8 3 0 0 3 3 3 0 Heat shock factor binding protein 1 TMF_TATA_bd PF12325.8 gi|336254334|ref|YP_004597441.1| - 0.011 15.9 1.4 3 8.1 0.4 2.2 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding DHR10 PF18595.1 gi|336254334|ref|YP_004597441.1| - 0.017 15.1 3.7 0.025 14.6 3.7 1.3 1 0 0 1 1 1 0 Designed helical repeat protein 10 domain DUF745 PF05335.13 gi|336254334|ref|YP_004597441.1| - 0.018 14.8 0.5 0.029 14.1 0.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF745) Syntaxin-6_N PF09177.11 gi|336254334|ref|YP_004597441.1| - 0.019 15.5 1.0 0.047 14.2 1.1 1.6 1 1 0 1 1 1 0 Syntaxin 6, N-terminal Trimer_CC PF08954.11 gi|336254334|ref|YP_004597441.1| - 0.02 14.4 10.6 0.87 9.2 1.0 3.5 3 0 0 3 3 3 0 Trimerisation motif Spectrin PF00435.21 gi|336254334|ref|YP_004597441.1| - 0.027 15.0 0.7 0.076 13.5 0.7 1.7 1 1 0 1 1 1 0 Spectrin repeat DUF3450 PF11932.8 gi|336254334|ref|YP_004597441.1| - 0.028 13.8 0.3 0.11 11.8 0.2 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3450) DUF1664 PF07889.12 gi|336254334|ref|YP_004597441.1| - 0.029 14.4 0.5 0.063 13.3 0.4 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) TolA_bind_tri PF16331.5 gi|336254334|ref|YP_004597441.1| - 0.037 14.1 2.5 6.4 6.9 0.5 2.6 1 1 2 3 3 3 0 TolA binding protein trimerisation DASH_Spc19 PF08287.11 gi|336254334|ref|YP_004597441.1| - 0.041 13.8 0.4 1.6 8.6 0.0 2.2 1 1 1 2 2 2 0 Spc19 Myosin_tail_1 PF01576.19 gi|336254334|ref|YP_004597441.1| - 0.043 11.6 2.8 0.079 10.8 2.8 1.3 1 1 0 1 1 1 0 Myosin tail PspA_IM30 PF04012.12 gi|336254334|ref|YP_004597441.1| - 0.047 13.3 6.2 0.42 10.1 0.4 2.2 1 1 1 2 2 2 0 PspA/IM30 family MutS_III PF05192.18 gi|336254334|ref|YP_004597441.1| - 0.055 13.7 0.1 0.055 13.7 0.1 1.2 1 0 0 1 1 1 0 MutS domain III ERM PF00769.19 gi|336254334|ref|YP_004597441.1| - 0.056 13.3 0.1 0.059 13.2 0.1 1.1 1 0 0 1 1 1 0 Ezrin/radixin/moesin family Lzipper-MIP1 PF14389.6 gi|336254334|ref|YP_004597441.1| - 0.06 13.7 1.7 0.15 12.3 0.9 2.2 1 1 1 2 2 2 0 Leucine-zipper of ternary complex factor MIP1 NPV_P10 PF05531.12 gi|336254334|ref|YP_004597441.1| - 0.061 13.8 3.1 1.2 9.7 0.6 2.8 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein Spc7 PF08317.11 gi|336254334|ref|YP_004597441.1| - 0.07 12.0 0.7 0.099 11.5 0.7 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein SlyX PF04102.12 gi|336254334|ref|YP_004597441.1| - 0.074 13.7 4.8 1.9 9.2 1.7 3.1 1 1 1 2 2 2 0 SlyX Prefoldin_2 PF01920.20 gi|336254334|ref|YP_004597441.1| - 0.076 13.0 0.5 6.9 6.7 0.3 2.5 1 1 1 2 2 2 0 Prefoldin subunit TMF_DNA_bd PF12329.8 gi|336254334|ref|YP_004597441.1| - 0.083 12.9 1.5 1.7 8.7 0.1 2.6 2 1 1 3 3 3 0 TATA element modulatory factor 1 DNA binding Baculo_PEP_C PF04513.12 gi|336254334|ref|YP_004597441.1| - 0.1 12.6 0.1 0.42 10.7 0.1 1.7 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus DivIC PF04977.15 gi|336254334|ref|YP_004597441.1| - 0.11 12.3 2.0 9.4 6.1 0.1 2.3 1 1 1 2 2 2 0 Septum formation initiator Golgin_A5 PF09787.9 gi|336254334|ref|YP_004597441.1| - 0.13 11.7 0.6 0.16 11.4 0.6 1.1 1 0 0 1 1 1 0 Golgin subfamily A member 5 DUF1515 PF07439.11 gi|336254334|ref|YP_004597441.1| - 0.13 12.3 1.1 0.35 10.9 0.7 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF1515) DUF3138 PF11336.8 gi|336254334|ref|YP_004597441.1| - 0.13 10.8 0.0 0.13 10.8 0.0 1.4 2 0 0 2 2 1 0 Protein of unknown function (DUF3138) Fez1 PF06818.15 gi|336254334|ref|YP_004597441.1| - 0.14 12.5 0.1 0.17 12.3 0.1 1.2 1 0 0 1 1 1 0 Fez1 Phage_GP20 PF06810.11 gi|336254334|ref|YP_004597441.1| - 0.15 11.9 0.2 0.34 10.7 0.1 1.6 1 1 0 1 1 1 0 Phage minor structural protein GP20 TRAF_BIRC3_bd PF16673.5 gi|336254334|ref|YP_004597441.1| - 0.16 11.8 2.6 0.22 11.3 1.3 1.9 2 0 0 2 2 2 0 TNF receptor-associated factor BIRC3 binding domain Vir_act_alpha_C PF10400.9 gi|336254334|ref|YP_004597441.1| - 0.17 12.6 3.1 3.7 8.3 0.4 2.4 1 1 1 2 2 2 0 Virulence activator alpha C-term Streptin-Immun PF11083.8 gi|336254334|ref|YP_004597441.1| - 0.19 12.1 0.4 0.31 11.5 0.4 1.3 1 0 0 1 1 1 0 Lantibiotic streptin immunity protein DUF4407 PF14362.6 gi|336254334|ref|YP_004597441.1| - 0.2 11.0 1.6 0.35 10.2 1.5 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) DUF2730 PF10805.8 gi|336254334|ref|YP_004597441.1| - 0.27 11.3 0.8 2.6 8.2 0.3 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF2730) Tropomyosin PF00261.20 gi|336254334|ref|YP_004597441.1| - 0.33 10.3 9.5 4.6 6.5 9.3 2.3 1 1 0 1 1 1 0 Tropomyosin ATG16 PF08614.11 gi|336254334|ref|YP_004597441.1| - 0.37 11.0 3.9 1.3 9.2 4.0 1.8 1 1 0 1 1 1 0 Autophagy protein 16 (ATG16) CLZ PF16526.5 gi|336254334|ref|YP_004597441.1| - 0.38 11.1 6.6 7 7.1 0.1 2.9 2 1 1 3 3 3 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels MRF_C1 PF13887.6 gi|336254334|ref|YP_004597441.1| - 0.49 9.6 4.7 27 4.0 0.1 3.4 3 0 0 3 3 3 0 Myelin gene regulatory factor -C-terminal domain 1 FUSC PF04632.12 gi|336254334|ref|YP_004597441.1| - 0.69 8.4 2.7 0.9 8.0 2.7 1.1 1 0 0 1 1 1 0 Fusaric acid resistance protein family HalX PF08663.10 gi|336254334|ref|YP_004597441.1| - 1.9 8.8 17.2 3.1 8.2 1.5 3.3 1 1 2 3 3 3 0 HalX domain CENP-Q PF13094.6 gi|336254334|ref|YP_004597441.1| - 5.1 7.3 6.5 58 3.8 6.4 2.3 1 1 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit DUF87 PF01935.17 gi|336254335|ref|YP_004597442.1| - 4.1e-06 27.1 0.0 2.1e-05 24.8 0.0 2.0 1 1 0 1 1 1 1 Helicase HerA, central domain DUF853 PF05872.12 gi|336254335|ref|YP_004597442.1| - 6.4e-05 21.7 0.3 0.032 12.8 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) AAA_16 PF13191.6 gi|336254335|ref|YP_004597442.1| - 0.0022 18.4 3.2 0.0097 16.3 0.3 2.4 1 1 1 2 2 2 1 AAA ATPase domain TrwB_AAD_bind PF10412.9 gi|336254335|ref|YP_004597442.1| - 0.0038 16.2 0.0 0.3 9.9 0.0 2.1 2 0 0 2 2 2 2 Type IV secretion-system coupling protein DNA-binding domain AAA PF00004.29 gi|336254335|ref|YP_004597442.1| - 0.0049 17.3 0.0 4.4 7.7 0.1 2.7 3 0 0 3 3 3 2 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|336254335|ref|YP_004597442.1| - 0.011 16.1 0.1 5 7.4 0.0 2.7 2 1 0 3 3 3 0 AAA domain FtsK_SpoIIIE PF01580.18 gi|336254335|ref|YP_004597442.1| - 0.02 14.3 0.4 4.5 6.6 0.1 2.5 3 0 0 3 3 3 0 FtsK/SpoIIIE family Zot PF05707.12 gi|336254335|ref|YP_004597442.1| - 0.03 14.0 0.0 0.94 9.1 0.0 2.4 2 1 1 3 3 3 0 Zonular occludens toxin (Zot) Zeta_toxin PF06414.12 gi|336254335|ref|YP_004597442.1| - 0.079 12.2 0.0 0.17 11.1 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin YtkA PF13115.6 gi|336254336|ref|YP_004597443.1| - 0.014 16.0 2.5 0.032 14.8 2.5 1.7 1 1 0 1 1 1 0 YtkA-like CarboxypepD_reg PF13620.6 gi|336254336|ref|YP_004597443.1| - 0.12 12.6 2.7 0.13 12.5 1.0 1.9 3 0 0 3 3 3 0 Carboxypeptidase regulatory-like domain DUF4604 PF15377.6 gi|336254336|ref|YP_004597443.1| - 1.1 9.7 5.2 0.54 10.7 3.4 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4604) ABC2_membrane_3 PF12698.7 gi|336254337|ref|YP_004597444.1| - 6.2e-11 42.0 0.0 9.6e-11 41.4 0.0 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|336254337|ref|YP_004597444.1| - 1.5e-06 27.7 7.6 1.9e-06 27.4 7.2 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|336254337|ref|YP_004597444.1| - 1.8e-05 24.3 7.7 1.8e-05 24.3 7.7 1.5 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_4 PF12730.7 gi|336254337|ref|YP_004597444.1| - 8.8e-05 22.5 4.0 8.8e-05 22.5 4.0 1.8 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|336254338|ref|YP_004597445.1| - 2.4e-06 27.0 3.9 2.4e-06 27.0 3.9 2.6 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|336254338|ref|YP_004597445.1| - 2.8 7.0 29.2 0.011 14.9 17.0 2.2 1 1 1 2 2 2 0 ABC-2 family transporter protein ABC_tran PF00005.27 gi|336254339|ref|YP_004597446.1| - 5.7e-29 101.4 0.0 1.6e-28 99.9 0.0 1.7 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|336254339|ref|YP_004597446.1| - 2.2e-14 54.0 0.0 8.6e-09 35.6 0.0 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|336254339|ref|YP_004597446.1| - 2.6e-12 47.3 0.2 4.8e-12 46.4 0.2 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_30 PF13604.6 gi|336254339|ref|YP_004597446.1| - 0.00021 21.1 0.4 0.001 18.8 0.1 2.2 2 1 0 2 2 2 1 AAA domain AAA_23 PF13476.6 gi|336254339|ref|YP_004597446.1| - 0.0069 16.9 0.5 0.029 14.9 0.1 2.0 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|336254339|ref|YP_004597446.1| - 0.014 15.6 0.0 0.049 13.9 0.0 1.9 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|336254339|ref|YP_004597446.1| - 0.016 15.0 0.0 0.78 9.4 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain SMC_N PF02463.19 gi|336254339|ref|YP_004597446.1| - 0.016 14.7 0.0 4.2 6.8 0.0 2.3 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_24 PF13479.6 gi|336254339|ref|YP_004597446.1| - 0.019 14.7 1.2 0.61 9.8 0.1 2.8 3 0 0 3 3 3 0 AAA domain SRP54 PF00448.22 gi|336254339|ref|YP_004597446.1| - 0.026 14.1 0.5 0.053 13.2 0.5 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_13 PF13166.6 gi|336254339|ref|YP_004597446.1| - 0.073 11.7 0.1 8.3 4.9 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|336254339|ref|YP_004597446.1| - 0.1 12.4 0.1 0.19 11.5 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_27 PF13514.6 gi|336254339|ref|YP_004597446.1| - 0.14 11.8 0.0 0.3 10.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA PF00004.29 gi|336254339|ref|YP_004597446.1| - 0.19 12.1 0.8 0.91 10.0 0.8 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 gi|336254339|ref|YP_004597446.1| - 0.37 11.0 4.2 0.53 10.5 0.4 2.7 2 1 1 3 3 3 0 AAA domain HxlR PF01638.17 gi|336254340|ref|YP_004597447.1| - 2.6e-20 72.0 0.0 3.2e-20 71.8 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_34 PF13601.6 gi|336254340|ref|YP_004597447.1| - 2.4e-06 27.6 0.0 3.3e-06 27.2 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_27 PF13463.6 gi|336254340|ref|YP_004597447.1| - 3.9e-05 24.1 0.0 5.5e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_5 PF01022.20 gi|336254340|ref|YP_004597447.1| - 0.00041 20.1 0.0 0.00054 19.8 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family PadR PF03551.14 gi|336254340|ref|YP_004597447.1| - 0.002 18.1 0.0 0.0031 17.5 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family MarR PF01047.22 gi|336254340|ref|YP_004597447.1| - 0.0089 15.9 0.0 0.014 15.3 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|336254340|ref|YP_004597447.1| - 0.013 15.4 0.0 0.019 14.8 0.0 1.2 1 0 0 1 1 1 0 MarR family HTH_20 PF12840.7 gi|336254340|ref|YP_004597447.1| - 0.015 15.3 0.1 0.022 14.8 0.1 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain Trp_repressor PF01371.19 gi|336254340|ref|YP_004597447.1| - 0.023 14.8 0.0 0.034 14.3 0.0 1.2 1 0 0 1 1 1 0 Trp repressor protein HTH_45 PF14947.6 gi|336254340|ref|YP_004597447.1| - 0.034 14.1 0.0 0.049 13.6 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix TrmB PF01978.19 gi|336254340|ref|YP_004597447.1| - 0.042 13.7 0.0 0.057 13.3 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB OGFr_N PF04664.13 gi|336254340|ref|YP_004597447.1| - 0.11 12.0 0.0 0.15 11.6 0.0 1.1 1 0 0 1 1 1 0 Opioid growth factor receptor (OGFr) conserved region Replic_Relax PF13814.6 gi|336254340|ref|YP_004597447.1| - 0.12 12.4 0.0 0.16 12.0 0.0 1.2 1 0 0 1 1 1 0 Replication-relaxation DUF4364 PF14277.6 gi|336254340|ref|YP_004597447.1| - 0.24 11.1 0.0 0.33 10.7 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) UPF0179 PF03684.13 gi|336254341|ref|YP_004597448.1| - 1.7e-48 164.1 0.0 1.9e-48 163.9 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0179) DDE_Tnp_1_6 PF13751.6 gi|336254341|ref|YP_004597448.1| - 0.012 15.9 0.2 0.021 15.0 0.0 1.5 2 0 0 2 2 2 0 Transposase DDE domain MelC1 PF06236.11 gi|336254341|ref|YP_004597448.1| - 0.015 15.4 0.0 0.024 14.7 0.0 1.4 1 0 0 1 1 1 0 Tyrosinase co-factor MelC1 DUF2188 PF09954.9 gi|336254342|ref|YP_004597449.1| - 0.11 12.7 0.3 0.19 11.9 0.0 1.6 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2188) PrkA PF06798.12 gi|336254343|ref|YP_004597450.1| - 9.7e-72 241.7 8.2 9.7e-72 241.7 8.2 1.9 2 0 0 2 2 2 1 PrkA serine protein kinase C-terminal domain AAA_PrkA PF08298.11 gi|336254343|ref|YP_004597450.1| - 3.1e-63 213.9 0.0 4.8e-63 213.2 0.0 1.3 1 0 0 1 1 1 1 PrkA AAA domain RasGAP_C PF03836.15 gi|336254343|ref|YP_004597450.1| - 0.057 13.6 0.7 9.1 6.4 0.1 2.7 2 0 0 2 2 2 0 RasGAP C-terminus AAA_18 PF13238.6 gi|336254343|ref|YP_004597450.1| - 0.19 12.2 1.1 1.5 9.4 0.0 2.8 2 1 0 2 2 2 0 AAA domain PrkA PF06798.12 gi|336254344|ref|YP_004597451.1| - 6.5e-54 183.3 1.0 6.5e-54 183.3 1.0 2.6 3 0 0 3 3 3 1 PrkA serine protein kinase C-terminal domain AAA_PrkA PF08298.11 gi|336254344|ref|YP_004597451.1| - 1e-13 51.0 0.0 1.9e-10 40.2 0.0 3.2 2 1 0 2 2 2 2 PrkA AAA domain DUF444 PF04285.12 gi|336254345|ref|YP_004597452.1| - 1.4e-128 429.6 0.1 1.6e-128 429.4 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF444) Tautomerase_2 PF14552.6 gi|336254345|ref|YP_004597452.1| - 0.15 12.2 0.3 2.4 8.3 0.1 2.7 3 0 0 3 3 3 0 Tautomerase enzyme SpoVR PF04293.13 gi|336254346|ref|YP_004597453.1| - 8.5e-92 308.0 4.8 3.3e-77 259.9 0.9 2.2 2 0 0 2 2 2 2 SpoVR like protein SOAR PF16533.5 gi|336254346|ref|YP_004597453.1| - 0.098 12.6 0.0 0.44 10.5 0.0 2.1 1 0 0 1 1 1 0 STIM1 Orai1-activating region HEAT_2 PF13646.6 gi|336254347|ref|YP_004597454.1| - 1e-10 41.9 16.1 1.1e-06 29.0 6.5 2.4 2 1 0 2 2 2 2 HEAT repeats HEAT PF02985.22 gi|336254347|ref|YP_004597454.1| - 2.1e-06 27.5 13.5 0.084 13.2 0.2 4.8 5 0 0 5 5 5 3 HEAT repeat HEAT_EZ PF13513.6 gi|336254347|ref|YP_004597454.1| - 3.2e-06 27.5 15.1 2.8e-05 24.5 2.5 4.2 3 1 1 4 4 4 2 HEAT-like repeat Arm PF00514.23 gi|336254347|ref|YP_004597454.1| - 4.3e-06 26.6 3.1 0.34 11.0 0.2 3.4 3 0 0 3 3 3 2 Armadillo/beta-catenin-like repeat IFRD PF05004.13 gi|336254347|ref|YP_004597454.1| - 0.049 12.7 3.1 2.8 7.0 0.9 2.9 1 1 0 2 2 2 0 Interferon-related developmental regulator (IFRD) MMS19_N PF14500.6 gi|336254347|ref|YP_004597454.1| - 0.05 13.2 0.1 8.6 5.8 0.0 2.6 2 1 1 3 3 3 0 Dos2-interacting transcription regulator of RNA-Pol-II Cnd1 PF12717.7 gi|336254347|ref|YP_004597454.1| - 0.21 11.6 0.3 6.4 6.8 0.1 2.6 1 1 1 2 2 2 0 non-SMC mitotic condensation complex subunit 1 UPF0047 PF01894.17 gi|336254348|ref|YP_004597455.1| - 4.7e-36 123.4 0.0 5.7e-36 123.2 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 GDPD PF03009.17 gi|336254349|ref|YP_004597456.1| - 1.6e-26 93.6 0.1 4.7e-25 88.8 0.1 2.0 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family Response_reg PF00072.24 gi|336254350|ref|YP_004597457.1| - 1.1e-21 77.0 0.0 1.3e-21 76.8 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain adh_short_C2 PF13561.6 gi|336254351|ref|YP_004597458.1| - 7.6e-40 136.9 0.0 1.5e-39 135.9 0.0 1.4 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|336254351|ref|YP_004597458.1| - 4.9e-37 127.3 0.0 5.8e-37 127.0 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase Epimerase PF01370.21 gi|336254351|ref|YP_004597458.1| - 6e-08 32.4 0.0 2.4e-07 30.5 0.0 1.9 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family KR PF08659.10 gi|336254351|ref|YP_004597458.1| - 3.1e-05 24.0 0.0 4.7e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 KR domain GDP_Man_Dehyd PF16363.5 gi|336254351|ref|YP_004597458.1| - 0.0025 17.3 0.0 0.0037 16.7 0.0 1.2 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|336254351|ref|YP_004597458.1| - 0.009 15.1 0.1 0.011 14.8 0.1 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.6 gi|336254351|ref|YP_004597458.1| - 0.019 14.8 0.1 0.038 13.9 0.1 1.5 1 0 0 1 1 1 0 NAD(P)H-binding 3Beta_HSD PF01073.19 gi|336254351|ref|YP_004597458.1| - 0.091 11.7 0.0 0.13 11.2 0.0 1.2 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family LAT PF15234.6 gi|336254352|ref|YP_004597459.1| - 0.0083 15.9 1.5 0.011 15.5 1.5 1.1 1 0 0 1 1 1 1 Linker for activation of T-cells HTH_32 PF13565.6 gi|336254352|ref|YP_004597459.1| - 0.021 15.4 0.1 0.045 14.4 0.1 1.5 1 0 0 1 1 1 0 Homeodomain-like domain TrmB PF01978.19 gi|336254353|ref|YP_004597460.1| - 1.9e-06 27.7 0.5 2.6e-06 27.2 0.5 1.1 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.6 gi|336254353|ref|YP_004597460.1| - 0.053 14.0 0.1 0.067 13.7 0.1 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain Gln-synt_C PF00120.24 gi|336254354|ref|YP_004597461.1| - 2.1e-140 467.7 0.0 2.7e-140 467.3 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 gi|336254354|ref|YP_004597461.1| - 3.6e-32 109.9 0.0 8.6e-32 108.7 0.0 1.7 1 0 0 1 1 1 1 Glutamine synthetase, beta-Grasp domain Gln-synt_N_2 PF16952.5 gi|336254354|ref|YP_004597461.1| - 3.9e-05 23.4 0.1 0.0003 20.6 0.1 2.2 1 1 0 1 1 1 1 Glutamine synthetase N-terminal domain Terminase_GpA PF05876.12 gi|336254355|ref|YP_004597462.1| - 0.0013 17.4 0.4 0.0013 17.4 0.4 1.0 1 0 0 1 1 1 1 Phage terminase large subunit (GpA) zinc_ribbon_10 PF10058.9 gi|336254355|ref|YP_004597462.1| - 0.0049 16.6 0.1 0.009 15.7 0.1 1.4 1 1 0 1 1 1 1 Predicted integral membrane zinc-ribbon metal-binding protein DUF2197 PF09963.9 gi|336254355|ref|YP_004597462.1| - 0.035 14.4 4.4 0.31 11.3 3.9 2.1 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2197) Thioredoxin PF00085.20 gi|336254356|ref|YP_004597463.1| - 1.2e-10 41.3 0.0 1.5e-10 41.0 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin TraF PF13728.6 gi|336254356|ref|YP_004597463.1| - 3.9e-05 23.6 0.0 0.00029 20.8 0.0 1.9 1 1 0 1 1 1 1 F plasmid transfer operon protein Thioredoxin_2 PF13098.6 gi|336254356|ref|YP_004597463.1| - 0.00086 19.7 0.0 0.049 14.1 0.0 2.2 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_3 PF13192.6 gi|336254356|ref|YP_004597463.1| - 0.011 15.8 0.0 0.015 15.3 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin domain HyaE PF07449.11 gi|336254356|ref|YP_004597463.1| - 0.048 13.6 0.0 0.081 12.9 0.0 1.4 1 0 0 1 1 1 0 Hydrogenase-1 expression protein HyaE Phosducin PF02114.16 gi|336254356|ref|YP_004597463.1| - 0.065 12.2 0.0 0.074 12.0 0.0 1.1 1 0 0 1 1 1 0 Phosducin Mrr_N PF14338.6 gi|336254357|ref|YP_004597464.1| - 0.0021 18.2 0.0 0.0043 17.1 0.0 1.5 2 0 0 2 2 2 1 Mrr N-terminal domain HTH_20 PF12840.7 gi|336254357|ref|YP_004597464.1| - 0.0071 16.4 0.0 0.01 15.9 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain PGF-CTERM PF18204.1 gi|336254360|ref|YP_004597467.1| - 0.0011 18.9 3.0 0.0027 17.6 3.0 1.7 1 0 0 1 1 1 1 PGF-CTERM motif DUF4091 PF13320.6 gi|336254360|ref|YP_004597467.1| - 0.16 12.1 1.7 0.75 10.0 0.3 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4091) SDA1 PF05285.12 gi|336254360|ref|YP_004597467.1| - 9.1 5.6 11.9 13 5.1 11.9 1.1 1 0 0 1 1 1 0 SDA1 DEAD_assoc PF08494.11 gi|336254362|ref|YP_004597469.1| - 8.7e-37 126.8 0.4 2.8e-36 125.1 0.1 2.1 2 0 0 2 2 2 1 DEAD/H associated DEAD PF00270.29 gi|336254362|ref|YP_004597469.1| - 2.4e-29 102.3 0.0 5.7e-29 101.1 0.0 1.6 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|336254362|ref|YP_004597469.1| - 1.9e-22 79.7 0.0 2.3e-21 76.2 0.1 2.5 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|336254362|ref|YP_004597469.1| - 3.7e-07 30.3 0.0 7.7e-07 29.3 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_25 PF13481.6 gi|336254362|ref|YP_004597469.1| - 6e-05 22.7 1.7 0.00028 20.5 0.1 2.5 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.6 gi|336254362|ref|YP_004597469.1| - 0.00047 20.5 0.0 0.0041 17.5 0.0 2.4 2 1 0 2 2 2 1 AAA domain UvrD-helicase PF00580.21 gi|336254362|ref|YP_004597469.1| - 0.0064 16.1 0.0 0.011 15.2 0.0 1.3 1 0 0 1 1 1 1 UvrD/REP helicase N-terminal domain SNF2_N PF00176.23 gi|336254362|ref|YP_004597469.1| - 0.042 12.6 0.0 0.15 10.7 0.0 1.8 2 0 0 2 2 2 0 SNF2 family N-terminal domain HypA PF01155.19 gi|336254362|ref|YP_004597469.1| - 0.06 13.4 0.5 0.3 11.1 0.2 2.2 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA AAA_22 PF13401.6 gi|336254362|ref|YP_004597469.1| - 0.078 13.2 0.3 0.96 9.7 0.3 2.6 1 1 0 1 1 1 0 AAA domain Zn-ribbon_8 PF09723.10 gi|336254362|ref|YP_004597469.1| - 0.15 12.2 0.5 0.39 10.9 0.5 1.7 1 0 0 1 1 1 0 Zinc ribbon domain DUF116 PF01976.17 gi|336254362|ref|YP_004597469.1| - 0.19 11.2 0.2 0.37 10.3 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function DUF116 HATPase_c PF02518.26 gi|336254363|ref|YP_004597470.1| - 2.6e-28 98.8 0.0 2.6e-27 95.6 0.0 2.2 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.25 gi|336254363|ref|YP_004597470.1| - 9.9e-25 86.7 0.0 1.3e-14 54.1 0.0 2.9 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|336254363|ref|YP_004597470.1| - 6.6e-22 77.7 0.0 5.6e-10 39.4 0.0 2.6 2 0 0 2 2 2 2 PAS domain PAS_4 PF08448.10 gi|336254363|ref|YP_004597470.1| - 8.1e-17 61.5 0.0 5.6e-13 49.1 0.0 3.0 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.7 gi|336254363|ref|YP_004597470.1| - 1.5e-15 56.7 0.0 7.4e-09 35.4 0.0 2.9 2 0 0 2 2 2 2 PAS domain GAF_2 PF13185.6 gi|336254363|ref|YP_004597470.1| - 1.7e-14 54.3 0.4 7.4e-14 52.2 0.4 2.2 1 0 0 1 1 1 1 GAF domain PAS_3 PF08447.12 gi|336254363|ref|YP_004597470.1| - 2.4e-11 43.8 0.0 6.7e-06 26.3 0.0 4.0 3 1 0 3 3 3 2 PAS fold HisKA PF00512.25 gi|336254363|ref|YP_004597470.1| - 2.1e-10 40.5 0.1 2.1e-10 40.5 0.1 2.7 2 1 1 3 3 3 1 His Kinase A (phospho-acceptor) domain GAF PF01590.26 gi|336254363|ref|YP_004597470.1| - 7.3e-10 39.6 0.1 1.5e-09 38.5 0.1 1.6 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.6 gi|336254363|ref|YP_004597470.1| - 8.7e-10 39.0 0.0 2e-09 37.9 0.0 1.7 1 0 0 1 1 1 1 GAF domain HATPase_c_5 PF14501.6 gi|336254363|ref|YP_004597470.1| - 0.00021 21.1 0.0 0.00039 20.3 0.0 1.4 1 0 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.6 gi|336254363|ref|YP_004597470.1| - 0.0014 18.4 0.0 0.0028 17.5 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|336254363|ref|YP_004597470.1| - 0.0027 17.7 0.0 0.0059 16.6 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain ApoLp-III PF07464.11 gi|336254363|ref|YP_004597470.1| - 0.074 13.1 0.3 11 6.1 0.0 2.3 2 0 0 2 2 2 0 Apolipophorin-III precursor (apoLp-III) GlnD_UR_UTase PF08335.11 gi|336254363|ref|YP_004597470.1| - 0.24 11.5 1.2 0.43 10.7 1.2 1.4 1 0 0 1 1 1 0 GlnD PII-uridylyltransferase bZIP_2 PF07716.15 gi|336254363|ref|YP_004597470.1| - 9.5 6.4 6.9 13 6.0 2.3 2.3 2 0 0 2 2 2 0 Basic region leucine zipper Response_reg PF00072.24 gi|336254364|ref|YP_004597471.1| - 1.9e-13 50.6 0.0 2.2e-13 50.3 0.0 1.0 1 0 0 1 1 1 1 Response regulator receiver domain OKR_DC_1_N PF03709.15 gi|336254364|ref|YP_004597471.1| - 0.015 15.5 0.1 0.022 15.0 0.1 1.3 1 1 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain Methyltransf_25 PF13649.6 gi|336254364|ref|YP_004597471.1| - 0.022 15.4 0.1 0.032 14.9 0.1 1.3 1 0 0 1 1 1 0 Methyltransferase domain PS_Dcarbxylase PF02666.15 gi|336254365|ref|YP_004597472.1| - 2.7e-20 72.8 0.4 3.4e-17 62.7 0.4 2.8 1 1 0 1 1 1 1 Phosphatidylserine decarboxylase Peptidase_M23 PF01551.22 gi|336254365|ref|YP_004597472.1| - 0.044 14.0 0.4 60 3.9 0.0 3.8 3 1 1 4 4 4 0 Peptidase family M23 RnfC_N PF13375.6 gi|336254365|ref|YP_004597472.1| - 0.06 13.3 0.2 15 5.7 0.0 2.8 2 1 0 2 2 2 0 RnfC Barrel sandwich hybrid domain Catalase PF00199.19 gi|336254366|ref|YP_004597473.1| - 6.2e-172 572.0 0.3 8.1e-172 571.6 0.3 1.1 1 0 0 1 1 1 1 Catalase Catalase-rel PF06628.12 gi|336254366|ref|YP_004597473.1| - 1.3e-22 79.8 0.3 2.8e-22 78.7 0.3 1.6 1 0 0 1 1 1 1 Catalase-related immune-responsive Catalase_C PF18011.1 gi|336254366|ref|YP_004597473.1| - 1.6e-21 76.6 0.2 2.5e-21 75.9 0.2 1.3 1 0 0 1 1 1 1 C-terminal domain found in long catalases DJ-1_PfpI PF01965.24 gi|336254366|ref|YP_004597473.1| - 3.4e-10 40.0 0.6 6.3e-10 39.1 0.6 1.4 1 0 0 1 1 1 1 DJ-1/PfpI family BAT PF15915.5 gi|336254368|ref|YP_004597475.1| - 3.5e-23 82.2 0.4 7.5e-23 81.1 0.1 1.6 2 0 0 2 2 2 1 GAF and HTH_10 associated domain HTH_10 PF04967.12 gi|336254368|ref|YP_004597475.1| - 8.8e-18 63.9 0.1 1.9e-17 62.8 0.1 1.6 1 0 0 1 1 1 1 HTH DNA binding domain HTH_AraC PF00165.23 gi|336254368|ref|YP_004597475.1| - 0.00054 20.0 0.1 0.0029 17.7 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix proteins, AraC family TetR_N PF00440.23 gi|336254368|ref|YP_004597475.1| - 0.0019 17.9 0.0 0.0047 16.7 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family MarR_2 PF12802.7 gi|336254368|ref|YP_004597475.1| - 0.0032 17.3 0.1 0.0067 16.3 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_3 PF01381.22 gi|336254368|ref|YP_004597475.1| - 0.0042 17.1 0.0 0.0088 16.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix HTH_Crp_2 PF13545.6 gi|336254368|ref|YP_004597475.1| - 0.0045 16.9 0.0 0.0095 15.9 0.0 1.6 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_24 PF13412.6 gi|336254368|ref|YP_004597475.1| - 0.006 16.1 0.0 0.011 15.3 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Phage_CI_repr PF07022.13 gi|336254368|ref|YP_004597475.1| - 0.017 15.2 0.0 0.037 14.1 0.0 1.5 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain HTH_20 PF12840.7 gi|336254368|ref|YP_004597475.1| - 0.021 14.9 0.0 0.044 13.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_38 PF13936.6 gi|336254368|ref|YP_004597475.1| - 0.025 14.4 0.0 0.22 11.3 0.0 2.5 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|336254368|ref|YP_004597475.1| - 0.026 14.3 0.0 0.063 13.1 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain HTH_AsnC-type PF13404.6 gi|336254368|ref|YP_004597475.1| - 0.03 14.1 0.1 0.055 13.3 0.1 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_psq PF05225.16 gi|336254368|ref|YP_004597475.1| - 0.038 13.7 0.1 0.11 12.3 0.1 1.8 1 1 0 1 1 1 0 helix-turn-helix, Psq domain Sigma70_r4 PF04545.16 gi|336254368|ref|YP_004597475.1| - 0.042 13.4 0.1 0.11 12.1 0.1 1.7 1 1 0 1 1 1 0 Sigma-70, region 4 HTH_11 PF08279.12 gi|336254368|ref|YP_004597475.1| - 0.087 12.8 0.0 0.18 11.8 0.0 1.4 1 0 0 1 1 1 0 HTH domain HTH_17 PF12728.7 gi|336254368|ref|YP_004597475.1| - 0.13 12.5 0.0 0.29 11.4 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain AAA PF00004.29 gi|336254369|ref|YP_004597476.1| - 6.2e-95 314.6 0.0 1.6e-46 158.0 0.0 2.3 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|336254369|ref|YP_004597476.1| - 3e-26 90.9 3.5 7.3e-13 48.1 1.8 2.8 2 0 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|336254369|ref|YP_004597476.1| - 9.3e-23 80.2 1.0 5.2e-22 77.8 0.6 2.5 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.12 gi|336254369|ref|YP_004597476.1| - 1.2e-15 57.6 0.0 3.6e-07 30.1 0.0 3.5 4 0 0 4 4 3 2 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|336254369|ref|YP_004597476.1| - 2.1e-14 54.2 0.8 1.3e-05 25.6 0.1 4.0 2 2 0 2 2 2 2 AAA ATPase domain AAA_2 PF07724.14 gi|336254369|ref|YP_004597476.1| - 6.1e-14 52.5 0.0 5.7e-07 29.8 0.0 2.4 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_33 PF13671.6 gi|336254369|ref|YP_004597476.1| - 1.2e-13 51.4 0.0 6.3e-07 29.6 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_5 PF07728.14 gi|336254369|ref|YP_004597476.1| - 2.7e-12 46.8 0.5 6.7e-05 22.9 0.0 3.8 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|336254369|ref|YP_004597476.1| - 8.3e-10 39.1 0.1 0.0037 17.5 0.0 3.4 2 2 0 2 2 2 2 AAA domain AAA_14 PF13173.6 gi|336254369|ref|YP_004597476.1| - 8e-09 35.6 0.0 0.0031 17.6 0.0 2.3 2 0 0 2 2 2 2 AAA domain TIP49 PF06068.13 gi|336254369|ref|YP_004597476.1| - 1.8e-08 34.0 0.0 0.0025 17.1 0.0 2.3 2 0 0 2 2 2 2 TIP49 P-loop domain AAA_18 PF13238.6 gi|336254369|ref|YP_004597476.1| - 5.5e-08 33.4 0.0 0.012 16.1 0.0 3.0 3 0 0 3 3 2 2 AAA domain CDC48_2 PF02933.17 gi|336254369|ref|YP_004597476.1| - 8.1e-08 31.9 0.3 8.1e-08 31.9 0.3 2.0 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), domain 2 AAA_28 PF13521.6 gi|336254369|ref|YP_004597476.1| - 1.4e-07 31.9 1.2 0.016 15.5 0.0 3.5 3 0 0 3 3 2 2 AAA domain AAA_3 PF07726.11 gi|336254369|ref|YP_004597476.1| - 3.1e-07 30.3 0.0 0.025 14.4 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.22 gi|336254369|ref|YP_004597476.1| - 6.2e-07 29.8 0.0 0.02 15.3 0.0 2.4 2 0 0 2 2 2 2 RNA helicase IstB_IS21 PF01695.17 gi|336254369|ref|YP_004597476.1| - 8.8e-07 28.8 0.0 0.033 13.9 0.0 2.6 2 0 0 2 2 2 2 IstB-like ATP binding protein Mg_chelatase PF01078.21 gi|336254369|ref|YP_004597476.1| - 1.5e-06 27.7 0.3 0.062 12.7 0.2 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI ABC_tran PF00005.27 gi|336254369|ref|YP_004597476.1| - 1.6e-06 28.6 0.0 0.044 14.3 0.0 2.5 2 0 0 2 2 2 2 ABC transporter TsaE PF02367.17 gi|336254369|ref|YP_004597476.1| - 2.5e-06 27.5 0.0 0.11 12.6 0.0 2.4 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE Zeta_toxin PF06414.12 gi|336254369|ref|YP_004597476.1| - 1.4e-05 24.5 0.0 0.032 13.5 0.0 2.6 2 0 0 2 2 2 2 Zeta toxin Sigma54_activat PF00158.26 gi|336254369|ref|YP_004597476.1| - 1.6e-05 24.7 0.0 0.31 10.7 0.0 2.9 3 0 0 3 3 2 2 Sigma-54 interaction domain AAA_11 PF13086.6 gi|336254369|ref|YP_004597476.1| - 3.7e-05 23.6 0.0 0.26 11.0 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_7 PF12775.7 gi|336254369|ref|YP_004597476.1| - 4.2e-05 23.1 0.0 0.076 12.5 0.0 2.3 2 0 0 2 2 2 2 P-loop containing dynein motor region AAA_24 PF13479.6 gi|336254369|ref|YP_004597476.1| - 4.8e-05 23.2 0.0 0.3 10.8 0.0 2.7 2 1 0 2 2 2 2 AAA domain AAA_19 PF13245.6 gi|336254369|ref|YP_004597476.1| - 0.0001 22.7 0.0 0.07 13.5 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|336254369|ref|YP_004597476.1| - 0.00012 21.9 0.1 0.76 9.5 0.0 3.0 3 0 0 3 3 2 2 AAA domain DUF815 PF05673.13 gi|336254369|ref|YP_004597476.1| - 0.00015 21.0 0.0 0.29 10.3 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF815) Parvo_NS1 PF01057.17 gi|336254369|ref|YP_004597476.1| - 0.00018 20.7 0.0 0.19 10.8 0.0 2.3 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 DUF2075 PF09848.9 gi|336254369|ref|YP_004597476.1| - 0.0002 20.8 0.0 0.42 9.8 0.0 2.4 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) NACHT PF05729.12 gi|336254369|ref|YP_004597476.1| - 0.0002 21.3 0.3 0.7 9.8 0.1 3.6 4 0 0 4 4 3 1 NACHT domain PhoH PF02562.16 gi|336254369|ref|YP_004597476.1| - 0.00021 20.8 0.0 0.79 9.1 0.0 2.5 2 0 0 2 2 2 2 PhoH-like protein Sigma54_activ_2 PF14532.6 gi|336254369|ref|YP_004597476.1| - 0.00029 21.0 0.0 1.2 9.3 0.0 2.4 2 0 0 2 2 2 2 Sigma-54 interaction domain NB-ARC PF00931.22 gi|336254369|ref|YP_004597476.1| - 0.00057 19.1 0.0 0.44 9.7 0.0 2.3 2 0 0 2 2 2 2 NB-ARC domain ATPase PF06745.13 gi|336254369|ref|YP_004597476.1| - 0.0012 18.3 0.0 1.7 7.9 0.0 2.8 2 0 0 2 2 2 2 KaiC DEAD PF00270.29 gi|336254369|ref|YP_004597476.1| - 0.0018 18.1 0.4 11 5.8 0.0 3.9 2 2 2 4 4 4 0 DEAD/DEAH box helicase AAA_17 PF13207.6 gi|336254369|ref|YP_004597476.1| - 0.0034 17.8 0.0 2.1 8.8 0.0 3.6 3 1 0 3 3 2 1 AAA domain AAA_25 PF13481.6 gi|336254369|ref|YP_004597476.1| - 0.0034 17.0 9.3 1.7 8.2 0.1 4.5 4 1 0 5 5 4 2 AAA domain SKI PF01202.22 gi|336254369|ref|YP_004597476.1| - 0.0091 16.1 0.0 1.3 9.1 0.0 2.6 2 0 0 2 2 2 1 Shikimate kinase ATPase_2 PF01637.18 gi|336254369|ref|YP_004597476.1| - 0.0094 15.9 0.0 4.5 7.1 0.0 3.4 2 2 1 3 3 3 0 ATPase domain predominantly from Archaea AFG1_ATPase PF03969.16 gi|336254369|ref|YP_004597476.1| - 0.015 14.2 0.0 1.3 7.9 0.0 2.2 2 0 0 2 2 2 0 AFG1-like ATPase TniB PF05621.11 gi|336254369|ref|YP_004597476.1| - 0.016 14.6 0.0 12 5.2 0.0 3.5 3 1 1 4 4 4 0 Bacterial TniB protein CPT PF07931.12 gi|336254369|ref|YP_004597476.1| - 0.019 14.8 0.1 6.1 6.7 0.0 3.4 4 0 0 4 4 3 0 Chloramphenicol phosphotransferase-like protein Cytidylate_kin PF02224.18 gi|336254369|ref|YP_004597476.1| - 0.024 14.4 0.0 8.6 6.0 0.0 2.6 2 0 0 2 2 2 0 Cytidylate kinase NTPase_1 PF03266.15 gi|336254369|ref|YP_004597476.1| - 0.049 13.5 0.0 8.6 6.2 0.0 2.7 2 1 0 2 2 2 0 NTPase Viral_helicase1 PF01443.18 gi|336254369|ref|YP_004597476.1| - 0.059 13.1 0.0 5.8 6.6 0.0 2.3 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase Torsin PF06309.11 gi|336254369|ref|YP_004597476.1| - 0.074 13.1 0.0 6.4 6.9 0.0 2.4 2 0 0 2 2 2 0 Torsin Zot PF05707.12 gi|336254369|ref|YP_004597476.1| - 0.075 12.7 0.0 6.5 6.4 0.0 2.9 2 1 1 3 3 3 0 Zonular occludens toxin (Zot) Hydin_ADK PF17213.3 gi|336254369|ref|YP_004597476.1| - 0.082 13.2 0.0 4.7 7.4 0.0 2.5 2 0 0 2 2 2 0 Hydin Adenylate kinase-like domain Rad17 PF03215.15 gi|336254369|ref|YP_004597476.1| - 0.084 12.8 0.0 6.7 6.6 0.0 2.2 2 0 0 2 2 2 0 Rad17 P-loop domain ResIII PF04851.15 gi|336254369|ref|YP_004597476.1| - 0.14 12.2 0.0 25 4.8 0.0 2.7 2 1 0 2 2 2 0 Type III restriction enzyme, res subunit zf-C2H2_3 PF13878.6 gi|336254370|ref|YP_004597477.1| - 0.029 14.2 3.7 0.051 13.4 3.7 1.5 1 1 0 1 1 1 0 zinc-finger of acetyl-transferase ESCO GHMP_kinases_N PF00288.26 gi|336254373|ref|YP_004597480.1| - 2.1e-11 43.9 1.7 2.1e-11 43.9 1.7 1.9 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|336254373|ref|YP_004597480.1| - 0.0014 18.9 0.0 0.0038 17.6 0.0 1.8 1 0 0 1 1 1 1 GHMP kinases C terminal CM_2 PF01817.21 gi|336254374|ref|YP_004597481.1| - 2.3e-16 59.9 4.5 2.8e-16 59.6 4.5 1.1 1 0 0 1 1 1 1 Chorismate mutase type II GPS2_interact PF15784.5 gi|336254374|ref|YP_004597481.1| - 0.02 15.3 0.9 0.035 14.5 0.9 1.4 1 0 0 1 1 1 0 G-protein pathway suppressor 2-interacting domain tRNA_synt_1c_R2 PF04557.15 gi|336254374|ref|YP_004597481.1| - 0.044 14.7 0.3 0.075 14.0 0.3 1.3 1 0 0 1 1 1 0 Glutaminyl-tRNA synthetase, non-specific RNA binding region part 2 HxlR PF01638.17 gi|336254375|ref|YP_004597482.1| - 2.7e-14 52.8 0.0 3.1e-14 52.6 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_20 PF12840.7 gi|336254375|ref|YP_004597482.1| - 3.3e-06 27.0 0.1 5.1e-06 26.5 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|336254375|ref|YP_004597482.1| - 4.7e-06 26.4 0.0 7.9e-06 25.7 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|336254375|ref|YP_004597482.1| - 2.4e-05 24.1 0.0 3.5e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|336254375|ref|YP_004597482.1| - 0.00011 22.0 0.1 0.00018 21.2 0.1 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|336254375|ref|YP_004597482.1| - 0.00015 21.3 0.0 0.00022 20.7 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|336254375|ref|YP_004597482.1| - 0.06 13.2 0.0 0.085 12.7 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family MAGSP PF03082.14 gi|336254375|ref|YP_004597482.1| - 0.061 12.9 0.0 0.077 12.6 0.0 1.1 1 0 0 1 1 1 0 Male accessory gland secretory protein HTH_11 PF08279.12 gi|336254375|ref|YP_004597482.1| - 0.096 12.7 0.1 0.15 12.0 0.1 1.3 1 0 0 1 1 1 0 HTH domain HTH_DeoR PF08220.12 gi|336254375|ref|YP_004597482.1| - 0.12 12.2 0.1 0.19 11.5 0.1 1.3 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_34 PF13601.6 gi|336254375|ref|YP_004597482.1| - 0.12 12.6 0.0 0.15 12.2 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_36 PF13730.6 gi|336254375|ref|YP_004597482.1| - 0.16 11.9 0.0 0.25 11.3 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain F420_oxidored PF03807.17 gi|336254376|ref|YP_004597483.1| - 8.2e-17 61.6 0.1 1.8e-16 60.5 0.1 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent HTH_10 PF04967.12 gi|336254376|ref|YP_004597483.1| - 2.3e-11 43.3 0.1 5.2e-11 42.2 0.1 1.6 1 0 0 1 1 1 1 HTH DNA binding domain NAD_binding_2 PF03446.15 gi|336254376|ref|YP_004597483.1| - 0.00062 20.0 0.0 0.0013 18.9 0.0 1.6 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase HTH_5 PF01022.20 gi|336254376|ref|YP_004597483.1| - 0.0011 18.8 0.1 0.016 15.0 0.1 2.4 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_3 PF01381.22 gi|336254376|ref|YP_004597483.1| - 0.0053 16.8 0.1 0.11 12.6 0.1 2.4 1 1 0 1 1 1 1 Helix-turn-helix IlvN PF07991.12 gi|336254376|ref|YP_004597483.1| - 0.0074 15.9 0.1 0.012 15.2 0.1 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain HTH_20 PF12840.7 gi|336254376|ref|YP_004597483.1| - 0.011 15.8 0.1 0.039 14.0 0.1 1.9 1 1 0 1 1 1 0 Helix-turn-helix domain 3HCDH_N PF02737.18 gi|336254376|ref|YP_004597483.1| - 0.025 14.5 0.1 0.052 13.4 0.1 1.6 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Shikimate_DH PF01488.20 gi|336254376|ref|YP_004597483.1| - 0.036 14.1 0.0 0.063 13.3 0.0 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Sigma70_r3 PF04539.16 gi|336254376|ref|YP_004597483.1| - 0.038 14.1 0.5 0.089 12.9 0.1 1.8 2 0 0 2 2 2 0 Sigma-70 region 3 Sigma70_r4 PF04545.16 gi|336254376|ref|YP_004597483.1| - 0.046 13.3 0.1 0.11 12.1 0.1 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 MarR_2 PF12802.7 gi|336254376|ref|YP_004597483.1| - 0.073 13.0 0.1 0.7 9.8 0.1 2.5 1 1 0 1 1 1 0 MarR family HTH_11 PF08279.12 gi|336254376|ref|YP_004597483.1| - 0.12 12.3 0.0 0.39 10.7 0.0 1.9 2 0 0 2 2 2 0 HTH domain HTH_24 PF13412.6 gi|336254376|ref|YP_004597483.1| - 0.17 11.5 0.0 0.32 10.6 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Mga PF05043.13 gi|336254376|ref|YP_004597483.1| - 0.17 12.5 0.0 1.5 9.5 0.1 2.2 3 0 0 3 3 3 0 Mga helix-turn-helix domain NAD_binding_7 PF13241.6 gi|336254376|ref|YP_004597483.1| - 0.2 12.1 0.2 0.78 10.2 0.2 2.0 1 1 0 1 1 1 0 Putative NAD(P)-binding PIN PF01850.21 gi|336254377|ref|YP_004597484.1| - 1.3e-13 51.6 0.1 1.4e-13 51.4 0.1 1.0 1 0 0 1 1 1 1 PIN domain VAPB_antitox PF02697.14 gi|336254378|ref|YP_004597485.1| - 3e-20 72.8 3.9 4.1e-20 72.3 3.9 1.2 1 0 0 1 1 1 1 Putative antitoxin TraY PF05509.11 gi|336254378|ref|YP_004597485.1| - 0.099 12.7 1.0 11 6.1 0.2 2.3 2 0 0 2 2 2 0 TraY domain RHH_1 PF01402.21 gi|336254378|ref|YP_004597485.1| - 4 7.5 10.4 0.27 11.2 0.5 2.9 3 1 0 3 3 3 0 Ribbon-helix-helix protein, copG family Trypsin_2 PF13365.6 gi|336254379|ref|YP_004597486.1| - 6.8e-17 62.8 1.9 1.1e-16 62.0 1.9 1.4 1 0 0 1 1 1 1 Trypsin-like peptidase domain Trypsin PF00089.26 gi|336254379|ref|YP_004597486.1| - 8.1e-06 25.8 0.4 0.0013 18.6 0.1 2.2 2 0 0 2 2 2 2 Trypsin Peptidase_S46 PF10459.9 gi|336254379|ref|YP_004597486.1| - 0.0048 15.6 0.5 0.28 9.8 0.2 2.3 2 1 1 3 3 3 2 Peptidase S46 Peptidase_S29 PF02907.15 gi|336254379|ref|YP_004597486.1| - 0.024 14.4 0.1 0.16 11.7 0.0 2.0 2 0 0 2 2 2 0 Hepatitis C virus NS3 protease Peptidase_S32 PF05579.13 gi|336254379|ref|YP_004597486.1| - 0.024 13.8 4.5 1 8.5 0.3 2.2 2 0 0 2 2 2 0 Equine arteritis virus serine endopeptidase S32 DUF1059 PF06348.11 gi|336254381|ref|YP_004597488.1| - 0.0012 19.1 1.1 0.0016 18.6 1.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1059) MmoB_DmpM PF02406.17 gi|336254381|ref|YP_004597488.1| - 0.01 16.0 0.1 0.014 15.6 0.1 1.3 1 0 0 1 1 1 0 MmoB/DmpM family DUF5055 PF16478.5 gi|336254381|ref|YP_004597488.1| - 0.054 13.7 0.1 0.068 13.4 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5055) MarR_2 PF12802.7 gi|336254382|ref|YP_004597489.1| - 2.3e-07 30.6 0.7 7.2e-07 29.0 0.4 2.0 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.10 gi|336254382|ref|YP_004597489.1| - 1.2e-05 25.0 0.7 2.3e-05 24.1 0.1 1.8 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|336254382|ref|YP_004597489.1| - 0.00011 22.0 0.0 0.00021 21.1 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.6 gi|336254382|ref|YP_004597489.1| - 0.00017 21.5 0.2 0.00031 20.6 0.2 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain DprA_WH PF17782.1 gi|336254382|ref|YP_004597489.1| - 0.00018 21.6 0.2 0.002 18.2 0.1 2.2 2 0 0 2 2 2 1 DprA winged helix domain MarR PF01047.22 gi|336254382|ref|YP_004597489.1| - 0.00095 19.1 0.1 0.002 18.0 0.1 1.6 1 1 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|336254382|ref|YP_004597489.1| - 0.001 19.1 1.5 0.0044 17.0 0.4 2.5 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_27 PF13463.6 gi|336254382|ref|YP_004597489.1| - 0.0034 17.8 0.0 0.007 16.8 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF1724 PF08350.10 gi|336254382|ref|YP_004597489.1| - 0.0038 17.3 0.0 0.0061 16.7 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) HTH_24 PF13412.6 gi|336254382|ref|YP_004597489.1| - 0.021 14.4 0.1 0.021 14.4 0.1 1.8 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Trp_repressor PF01371.19 gi|336254382|ref|YP_004597489.1| - 0.035 14.2 0.2 0.065 13.4 0.2 1.3 1 0 0 1 1 1 0 Trp repressor protein HTH_Tnp_ISL3 PF13542.6 gi|336254382|ref|YP_004597489.1| - 0.059 12.8 0.4 0.15 11.5 0.4 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_23 PF13384.6 gi|336254382|ref|YP_004597489.1| - 0.13 12.1 1.2 0.39 10.6 1.2 1.8 1 0 0 1 1 1 0 Homeodomain-like domain DUF4928 PF16280.5 gi|336254382|ref|YP_004597489.1| - 0.16 11.2 0.0 0.28 10.4 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4928) HTH_34 PF13601.6 gi|336254382|ref|YP_004597489.1| - 0.19 11.9 0.0 0.32 11.2 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain UPF0561 PF10573.9 gi|336254384|ref|YP_004597491.1| - 0.039 14.1 0.2 0.074 13.2 0.2 1.5 1 0 0 1 1 1 0 Uncharacterised protein family UPF0561 Usp PF00582.26 gi|336254385|ref|YP_004597492.1| - 1.7e-14 54.5 1.5 2e-14 54.3 1.5 1.2 1 0 0 1 1 1 1 Universal stress protein family DUF4271 PF14093.6 gi|336254386|ref|YP_004597493.1| - 0.0013 18.7 3.4 0.0015 18.5 3.4 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF4271) Glucos_trans_II PF14264.6 gi|336254386|ref|YP_004597493.1| - 0.011 15.1 4.1 0.013 14.9 4.1 1.2 1 0 0 1 1 1 0 Glucosyl transferase GtrII DUF5353 PF17304.2 gi|336254386|ref|YP_004597493.1| - 0.083 12.6 0.1 0.17 11.6 0.1 1.6 1 0 0 1 1 1 0 Family of unknown function (DUF5353) OppC_N PF12911.7 gi|336254386|ref|YP_004597493.1| - 0.21 11.6 1.6 0.3 11.1 0.2 1.9 1 1 1 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C YpmT PF17431.2 gi|336254386|ref|YP_004597493.1| - 2.1 8.4 4.6 5.3 7.2 0.1 2.3 2 1 0 2 2 2 0 Uncharacterized YmpT-like HTH_20 PF12840.7 gi|336254387|ref|YP_004597494.1| - 1.1e-07 31.8 0.9 1.7e-07 31.2 0.9 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|336254387|ref|YP_004597494.1| - 0.00031 20.5 0.1 0.00043 20.1 0.1 1.2 1 0 0 1 1 1 1 MarR family FUR PF01475.19 gi|336254387|ref|YP_004597494.1| - 0.001 19.2 0.0 0.0012 18.9 0.0 1.2 1 0 0 1 1 1 1 Ferric uptake regulator family HTH_IclR PF09339.10 gi|336254387|ref|YP_004597494.1| - 0.0033 17.2 0.1 0.0053 16.5 0.1 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|336254387|ref|YP_004597494.1| - 0.0094 15.5 0.0 0.017 14.7 0.0 1.6 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|336254387|ref|YP_004597494.1| - 0.011 15.6 0.0 0.015 15.2 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|336254387|ref|YP_004597494.1| - 0.025 14.5 0.0 0.042 13.8 0.0 1.3 1 0 0 1 1 1 0 HTH domain PadR PF03551.14 gi|336254387|ref|YP_004597494.1| - 0.03 14.3 0.0 0.043 13.8 0.0 1.4 1 1 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_5 PF01022.20 gi|336254387|ref|YP_004597494.1| - 0.049 13.5 0.0 0.077 12.9 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_AsnC-type PF13404.6 gi|336254387|ref|YP_004597494.1| - 0.053 13.4 0.0 0.091 12.6 0.0 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain YdjM PF04307.14 gi|336254388|ref|YP_004597495.1| - 2.5e-11 43.2 1.6 3.5e-11 42.7 1.6 1.3 1 0 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase DUF2334 PF10096.9 gi|336254389|ref|YP_004597496.1| - 0.0057 16.3 0.0 0.011 15.4 0.0 1.4 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2334) Prenyltrans PF00432.21 gi|336254389|ref|YP_004597496.1| - 0.016 14.9 1.2 0.056 13.2 0.1 2.2 2 0 0 2 2 2 0 Prenyltransferase and squalene oxidase repeat DUF2254 PF10011.9 gi|336254391|ref|YP_004597498.1| - 3.1 6.5 5.6 0.8 8.5 2.5 1.5 2 0 0 2 2 2 0 Predicted membrane protein (DUF2254) DUF354 PF04007.12 gi|336254392|ref|YP_004597499.1| - 8.9e-08 31.6 0.0 3.3e-07 29.7 0.0 2.0 1 1 0 1 1 1 1 Protein of unknown function (DUF354) Glyco_transf_4 PF13439.6 gi|336254392|ref|YP_004597499.1| - 1.3e-05 25.3 0.4 2.3e-05 24.5 0.4 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|336254392|ref|YP_004597499.1| - 0.0042 17.5 0.8 0.0042 17.5 0.8 2.3 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_28 PF03033.20 gi|336254392|ref|YP_004597499.1| - 0.095 12.7 0.0 0.18 11.8 0.0 1.4 1 0 0 1 1 1 0 Glycosyltransferase family 28 N-terminal domain Paralemmin PF03285.15 gi|336254392|ref|YP_004597499.1| - 0.2 11.2 0.0 0.28 10.7 0.0 1.1 1 0 0 1 1 1 0 Paralemmin Glyco_hydro_76 PF03663.14 gi|336254393|ref|YP_004597500.1| - 1.5e-07 31.3 0.0 4.9e-05 23.0 0.0 2.3 2 0 0 2 2 2 2 Glycosyl hydrolase family 76 Pec_lyase PF09492.10 gi|336254393|ref|YP_004597500.1| - 0.00028 20.3 0.1 0.0069 15.8 0.0 2.3 1 1 1 2 2 2 1 Pectic acid lyase Glyco_hydro_88 PF07470.13 gi|336254393|ref|YP_004597500.1| - 0.00061 19.0 0.4 0.0015 17.7 0.4 1.8 1 1 0 1 1 1 1 Glycosyl Hydrolase Family 88 LANC_like PF05147.13 gi|336254393|ref|YP_004597500.1| - 0.022 13.4 0.1 4.7 5.7 0.0 2.8 2 1 0 2 2 2 0 Lanthionine synthetase C-like protein Glycos_transf_1 PF00534.20 gi|336254394|ref|YP_004597501.1| - 2.5e-31 108.5 0.0 3.5e-31 108.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|336254394|ref|YP_004597501.1| - 3.6e-26 92.2 0.0 5.8e-26 91.5 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|336254394|ref|YP_004597501.1| - 1.3e-07 31.8 0.1 3.7e-07 30.3 0.1 1.8 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|336254394|ref|YP_004597501.1| - 4.9e-07 30.3 1.4 4.9e-07 30.3 1.4 2.3 2 1 0 3 3 3 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|336254394|ref|YP_004597501.1| - 2.1e-06 28.0 0.0 4.2e-06 27.0 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Acetyltransf_6 PF13480.7 gi|336254395|ref|YP_004597502.1| - 5.4e-21 75.2 0.0 1.1e-20 74.3 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Beta_helix PF13229.6 gi|336254396|ref|YP_004597503.1| - 0.19 11.5 9.7 1.3 8.9 9.7 2.1 1 1 0 1 1 1 0 Right handed beta helix region Polysacc_synt PF01943.17 gi|336254397|ref|YP_004597504.1| - 2.1e-28 99.5 12.8 2.1e-28 99.5 12.8 2.6 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.6 gi|336254397|ref|YP_004597504.1| - 4.5e-19 68.8 21.1 1.8e-15 56.9 0.1 3.1 2 1 1 3 3 3 2 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|336254397|ref|YP_004597504.1| - 1.2e-18 67.6 17.8 1.2e-18 67.6 17.8 3.6 2 1 1 3 3 3 2 Polysaccharide biosynthesis C-terminal domain MatE PF01554.18 gi|336254397|ref|YP_004597504.1| - 1.1e-08 34.9 1.4 1.1e-08 34.9 1.4 4.0 3 1 1 4 4 4 1 MatE MurJ PF03023.14 gi|336254397|ref|YP_004597504.1| - 0.027 13.1 28.4 0.034 12.7 7.0 3.6 2 1 1 3 3 3 0 Lipid II flippase MurJ DUF2206 PF09971.9 gi|336254398|ref|YP_004597505.1| - 3.1 6.5 12.3 11 4.6 12.3 1.9 1 1 0 1 1 1 0 Predicted membrane protein (DUF2206) DUF1616 PF07760.11 gi|336254399|ref|YP_004597506.1| - 1.6e-83 280.5 4.2 1.9e-83 280.3 4.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) SQAPI PF16845.5 gi|336254399|ref|YP_004597506.1| - 0.0011 19.2 0.1 0.0027 18.0 0.1 1.6 1 0 0 1 1 1 1 Aspartic acid proteinase inhibitor Acetyltransf_6 PF13480.7 gi|336254400|ref|YP_004597507.1| - 1.2e-20 74.1 0.0 3.1e-20 72.8 0.0 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FemAB PF02388.16 gi|336254400|ref|YP_004597507.1| - 0.0013 17.8 0.0 1.1 8.1 0.0 2.2 2 0 0 2 2 2 2 FemAB family RDD PF06271.12 gi|336254401|ref|YP_004597508.1| - 1e-23 84.1 1.6 1.1e-23 84.0 1.6 1.0 1 0 0 1 1 1 1 RDD family Pex2_Pex12 PF04757.14 gi|336254401|ref|YP_004597508.1| - 0.25 10.9 0.0 0.4 10.2 0.0 1.4 1 0 0 1 1 1 0 Pex2 / Pex12 amino terminal region DUF2628 PF10947.8 gi|336254401|ref|YP_004597508.1| - 2.4 8.6 5.0 0.54 10.6 1.9 1.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2628) Phosphodiest PF01663.22 gi|336254402|ref|YP_004597509.1| - 3.8e-37 128.7 0.0 3.4e-35 122.3 0.0 2.1 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Zip PF02535.22 gi|336254403|ref|YP_004597510.1| - 1.9e-13 50.3 20.1 2.4e-12 46.7 8.6 3.2 1 1 0 2 2 2 2 ZIP Zinc transporter Phage_int_SAM_1 PF02899.17 gi|336254404|ref|YP_004597511.1| - 2e-05 24.8 0.1 7.5e-05 23.0 0.1 2.0 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 gi|336254404|ref|YP_004597511.1| - 0.011 16.1 0.0 0.068 13.6 0.0 2.0 1 1 0 1 1 1 0 Phage integrase, N-terminal SAM-like domain DUF5333 PF17267.2 gi|336254404|ref|YP_004597511.1| - 0.084 13.1 0.0 0.19 11.9 0.0 1.6 1 0 0 1 1 1 0 Family of unknown function (DUF5333) Phage_int_SAM_5 PF13102.6 gi|336254404|ref|YP_004597511.1| - 0.099 13.0 0.0 0.34 11.3 0.0 1.8 1 1 0 1 1 1 0 Phage integrase SAM-like domain Proton_antipo_M PF00361.20 gi|336254405|ref|YP_004597512.1| - 8.3e-33 113.8 14.6 8.3e-33 113.8 14.6 2.2 2 0 0 2 2 2 1 Proton-conducting membrane transporter Proton_antipo_M PF00361.20 gi|336254406|ref|YP_004597513.1| - 2.1e-52 178.2 18.5 9.8e-52 176.0 18.5 2.0 1 1 0 1 1 1 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|336254406|ref|YP_004597513.1| - 1e-05 25.5 0.2 3.1e-05 23.9 0.2 1.9 1 0 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Proton_antipo_M PF00361.20 gi|336254407|ref|YP_004597514.1| - 4.7e-58 196.7 15.2 4.7e-58 196.7 15.2 1.9 2 0 0 2 2 2 1 Proton-conducting membrane transporter NADHdeh_related PF10125.9 gi|336254407|ref|YP_004597514.1| - 3.9e-05 23.1 5.8 3.9e-05 23.1 5.8 3.1 3 1 0 3 3 3 2 NADH dehydrogenase I, subunit N related protein Oxidored_q2 PF00420.24 gi|336254408|ref|YP_004597515.1| - 1.3e-28 98.6 4.8 1.7e-28 98.3 4.8 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Phage_holin_3_6 PF07332.11 gi|336254408|ref|YP_004597515.1| - 0.0099 15.9 2.6 0.0099 15.9 2.6 2.0 1 1 1 2 2 2 1 Putative Actinobacterial Holin-X, holin superfamily III UNC-50 PF05216.13 gi|336254408|ref|YP_004597515.1| - 0.38 10.3 5.1 0.49 9.9 5.1 1.2 1 0 0 1 1 1 0 UNC-50 family Saf_2TM PF18303.1 gi|336254408|ref|YP_004597515.1| - 4 7.0 6.5 3.6 7.2 3.5 2.1 1 1 1 2 2 2 0 SAVED-fused 2TM effector domain MnhB PF04039.13 gi|336254409|ref|YP_004597516.1| - 7.8e-21 74.7 14.3 1e-20 74.3 14.3 1.1 1 0 0 1 1 1 1 Domain related to MnhB subunit of Na+/H+ antiporter DUF998 PF06197.13 gi|336254409|ref|YP_004597516.1| - 1 9.0 12.7 6.2 6.4 12.7 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF998) DUF4040 PF13244.6 gi|336254410|ref|YP_004597517.1| - 1e-18 67.2 14.3 1e-18 67.2 14.3 2.8 3 0 0 3 3 3 1 Domain of unknown function (DUF4040) Virul_fac_BrkB PF03631.15 gi|336254410|ref|YP_004597517.1| - 1.4 8.5 14.1 0.35 10.4 9.2 2.1 1 1 1 2 2 2 0 Virulence factor BrkB PhaG_MnhG_YufB PF03334.14 gi|336254411|ref|YP_004597518.1| - 2.4e-24 85.4 9.7 3e-24 85.0 9.7 1.1 1 0 0 1 1 1 1 Na+/H+ antiporter subunit Amastin PF07344.11 gi|336254411|ref|YP_004597518.1| - 0.065 13.1 0.9 0.085 12.7 0.7 1.3 1 1 0 1 1 1 0 Amastin surface glycoprotein SAYSvFN PF10260.9 gi|336254411|ref|YP_004597518.1| - 3.2 7.7 5.5 18 5.3 0.7 2.1 2 0 0 2 2 2 0 Uncharacterized conserved domain (SAYSvFN) MrpF_PhaF PF04066.13 gi|336254412|ref|YP_004597519.1| - 1.8e-18 66.6 5.5 1.8e-18 66.6 5.5 2.0 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) MNHE PF01899.16 gi|336254413|ref|YP_004597520.1| - 7.2e-34 116.6 2.5 1.1e-33 116.1 2.5 1.3 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit CbtB PF09489.10 gi|336254414|ref|YP_004597521.1| - 2.3e-16 59.6 4.0 2.6e-16 59.4 4.0 1.1 1 0 0 1 1 1 1 Probable cobalt transporter subunit (CbtB) CbtA PF09490.10 gi|336254415|ref|YP_004597522.1| - 1.2e-48 166.1 29.6 1.3e-48 165.9 29.6 1.0 1 0 0 1 1 1 1 Probable cobalt transporter subunit (CbtA) DUF4064 PF13273.6 gi|336254415|ref|YP_004597522.1| - 0.017 15.3 0.2 0.017 15.3 0.2 2.4 2 1 1 3 3 3 0 Protein of unknown function (DUF4064) Thiolase_N PF00108.23 gi|336254416|ref|YP_004597523.1| - 1.9e-76 256.9 0.0 3.1e-76 256.2 0.0 1.3 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|336254416|ref|YP_004597523.1| - 1.9e-27 95.3 0.0 3.3e-27 94.6 0.0 1.4 1 0 0 1 1 1 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|336254416|ref|YP_004597523.1| - 5.1e-05 23.0 0.3 0.00053 19.6 0.1 2.4 2 0 0 2 2 2 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III_C PF08541.10 gi|336254416|ref|YP_004597523.1| - 0.082 13.1 0.1 1 9.6 0.0 2.3 2 1 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DUF4689 PF15755.5 gi|336254417|ref|YP_004597524.1| - 0.089 12.4 0.3 0.14 11.7 0.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4689) DHO_dh PF01180.21 gi|336254418|ref|YP_004597525.1| - 9.5e-86 287.6 0.0 1.1e-85 287.4 0.0 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase NMO PF03060.15 gi|336254418|ref|YP_004597525.1| - 0.018 14.4 0.0 0.03 13.7 0.0 1.3 1 0 0 1 1 1 0 Nitronate monooxygenase AP_endonuc_2 PF01261.24 gi|336254418|ref|YP_004597525.1| - 0.027 13.9 0.0 0.062 12.7 0.0 1.7 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel zf-AN1 PF01428.16 gi|336254419|ref|YP_004597526.1| - 2.2e-12 46.9 5.3 2.6e-12 46.7 5.3 1.1 1 0 0 1 1 1 1 AN1-like Zinc finger Transp_Tc5_C PF04236.15 gi|336254419|ref|YP_004597526.1| - 0.072 13.5 1.8 0.091 13.1 1.8 1.2 1 0 0 1 1 1 0 Tc5 transposase C-terminal domain Amidohydro_1 PF01979.20 gi|336254420|ref|YP_004597527.1| - 4e-22 79.0 0.0 5.6e-22 78.5 0.0 1.2 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|336254420|ref|YP_004597527.1| - 7.4e-19 68.6 0.8 6.5e-09 35.8 0.0 3.2 3 1 0 3 3 3 2 Amidohydrolase family Urease_alpha PF00449.20 gi|336254420|ref|YP_004597527.1| - 0.024 15.0 0.3 0.4 11.0 0.2 2.4 2 0 0 2 2 2 0 Urease alpha-subunit, N-terminal domain Epimerase PF01370.21 gi|336254421|ref|YP_004597528.1| - 2.4e-57 194.2 0.0 2.9e-57 193.9 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|336254421|ref|YP_004597528.1| - 4.9e-54 184.0 0.0 1.3e-53 182.6 0.0 1.6 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase Polysacc_synt_2 PF02719.15 gi|336254421|ref|YP_004597528.1| - 3.5e-19 69.1 0.0 4.2e-18 65.5 0.0 2.4 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.19 gi|336254421|ref|YP_004597528.1| - 4.8e-19 68.4 0.0 1.2e-18 67.1 0.0 1.6 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|336254421|ref|YP_004597528.1| - 8.4e-13 48.1 0.0 1e-12 47.7 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|336254421|ref|YP_004597528.1| - 6.5e-09 35.3 0.3 1.7e-05 24.2 0.0 2.5 1 1 1 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.6 gi|336254421|ref|YP_004597528.1| - 1e-06 28.8 0.8 2.6e-06 27.5 0.0 1.9 2 0 0 2 2 2 1 NAD(P)H-binding NmrA PF05368.13 gi|336254421|ref|YP_004597528.1| - 0.002 17.7 0.0 0.004 16.7 0.0 1.5 1 0 0 1 1 1 1 NmrA-like family KR PF08659.10 gi|336254421|ref|YP_004597528.1| - 0.017 15.0 0.4 0.41 10.5 0.4 2.4 1 1 0 1 1 1 0 KR domain TrkA_N PF02254.18 gi|336254421|ref|YP_004597528.1| - 0.025 14.8 0.0 0.1 12.9 0.0 2.0 1 1 1 2 2 2 0 TrkA-N domain HTH_IclR PF09339.10 gi|336254423|ref|YP_004597530.1| - 7.4e-05 22.5 0.0 0.00014 21.5 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|336254423|ref|YP_004597530.1| - 0.0006 19.3 0.1 0.00095 18.7 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|336254423|ref|YP_004597530.1| - 0.0074 16.2 0.0 0.014 15.3 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|336254423|ref|YP_004597530.1| - 0.0092 15.9 0.0 0.016 15.1 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|336254423|ref|YP_004597530.1| - 0.063 13.3 0.1 0.12 12.4 0.1 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain BRCT_2 PF16589.5 gi|336254423|ref|YP_004597530.1| - 0.097 13.1 0.0 0.14 12.6 0.0 1.3 1 0 0 1 1 1 0 BRCT domain, a BRCA1 C-terminus domain TrmB PF01978.19 gi|336254423|ref|YP_004597530.1| - 0.17 11.8 0.1 0.44 10.5 0.0 1.6 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB Big_3_5 PF16640.5 gi|336254424|ref|YP_004597531.1| - 0.001 19.2 1.2 0.001 19.2 1.2 5.0 4 1 1 5 5 5 1 Bacterial Ig-like domain (group 3) Fn3-like PF14310.6 gi|336254424|ref|YP_004597531.1| - 0.006 16.7 0.1 0.11 12.6 0.0 2.7 2 0 0 2 2 2 1 Fibronectin type III-like domain Transglut_C PF00927.22 gi|336254424|ref|YP_004597531.1| - 0.064 13.4 0.0 0.19 11.9 0.0 1.8 1 0 0 1 1 1 0 Transglutaminase family, C-terminal ig like domain Glutenin_hmw PF03157.13 gi|336254424|ref|YP_004597531.1| - 0.076 11.4 63.2 0.0064 15.0 45.2 2.4 2 0 0 2 2 2 0 High molecular weight glutenin subunit HTH_20 PF12840.7 gi|336254425|ref|YP_004597532.1| - 0.038 14.0 0.0 0.19 11.8 0.0 2.1 1 1 0 1 1 1 0 Helix-turn-helix domain zf-DNL PF05180.12 gi|336254426|ref|YP_004597533.1| - 0.0033 17.3 0.4 0.0037 17.2 0.4 1.1 1 0 0 1 1 1 1 DNL zinc finger DUF3268 PF11672.8 gi|336254426|ref|YP_004597533.1| - 0.0088 16.4 0.4 0.01 16.1 0.4 1.0 1 0 0 1 1 1 1 zinc-finger-containing domain HypA PF01155.19 gi|336254426|ref|YP_004597533.1| - 0.013 15.5 0.4 0.015 15.3 0.4 1.0 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|336254426|ref|YP_004597533.1| - 0.018 15.2 1.0 0.03 14.4 1.0 1.4 1 1 0 1 1 1 0 Zinc ribbon domain DUF35_N PF12172.8 gi|336254426|ref|YP_004597533.1| - 0.27 11.2 0.8 0.27 11.2 0.8 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-LITAF-like PF10601.9 gi|336254426|ref|YP_004597533.1| - 0.3 11.4 3.3 3.6 7.9 0.1 2.1 1 1 0 2 2 2 0 LITAF-like zinc ribbon domain HTH_20 PF12840.7 gi|336254428|ref|YP_004597535.1| - 2.8e-06 27.3 0.1 5e-06 26.5 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|336254428|ref|YP_004597535.1| - 0.0015 18.0 0.1 0.0027 17.2 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|336254428|ref|YP_004597535.1| - 0.0026 17.6 0.1 0.0039 17.0 0.1 1.4 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|336254428|ref|YP_004597535.1| - 0.0032 17.4 0.1 0.0058 16.5 0.1 1.4 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.7 gi|336254428|ref|YP_004597535.1| - 0.0036 17.2 0.0 0.0069 16.2 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|336254428|ref|YP_004597535.1| - 0.0079 16.7 0.1 0.013 16.0 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_5 PF01022.20 gi|336254428|ref|YP_004597535.1| - 0.019 14.8 0.0 0.03 14.2 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|336254428|ref|YP_004597535.1| - 0.025 14.4 0.0 0.04 13.7 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|336254428|ref|YP_004597535.1| - 0.036 13.9 0.0 0.066 13.1 0.0 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain PadR PF03551.14 gi|336254429|ref|YP_004597536.1| - 3.2e-14 52.6 0.3 3.7e-14 52.4 0.3 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.6 gi|336254429|ref|YP_004597536.1| - 0.0042 17.0 0.1 0.0058 16.6 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_27 PF13463.6 gi|336254429|ref|YP_004597536.1| - 0.012 16.0 0.0 0.015 15.7 0.0 1.3 1 1 0 1 1 1 0 Winged helix DNA-binding domain DUF4358 PF14270.6 gi|336254429|ref|YP_004597536.1| - 0.03 14.6 0.0 0.054 13.8 0.0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4358) B-block_TFIIIC PF04182.12 gi|336254429|ref|YP_004597536.1| - 0.069 13.3 0.0 0.088 13.0 0.0 1.1 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_34 PF13601.6 gi|336254429|ref|YP_004597536.1| - 0.074 13.2 0.0 0.086 13.0 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF1495 PF07381.11 gi|336254429|ref|YP_004597536.1| - 0.083 12.7 0.0 0.1 12.5 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) DUF4364 PF14277.6 gi|336254429|ref|YP_004597536.1| - 0.096 12.4 0.0 0.12 12.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) DUF1616 PF07760.11 gi|336254430|ref|YP_004597537.1| - 5.4e-85 285.3 1.3 6.2e-85 285.1 1.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) DUF4981 PF16353.5 gi|336254430|ref|YP_004597537.1| - 0.073 13.6 0.9 1.1 9.7 0.1 2.4 1 1 1 2 2 2 0 Domain of unknown function(DUF4981) DUF3040 PF11239.8 gi|336254431|ref|YP_004597538.1| - 0.013 15.8 1.9 0.018 15.3 0.8 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3040) SLATT_1 PF18181.1 gi|336254431|ref|YP_004597538.1| - 0.25 11.3 2.7 0.16 11.9 0.9 1.6 2 0 0 2 2 2 0 SMODS and SLOG-associating 2TM effector domain 1 Hexapep PF00132.24 gi|336254432|ref|YP_004597539.1| - 4.6e-28 95.9 14.7 2.6e-09 36.4 0.2 5.2 5 0 0 5 5 5 5 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|336254432|ref|YP_004597539.1| - 8e-18 63.9 12.7 1.8e-07 30.8 0.5 4.8 4 1 1 5 5 5 5 Hexapeptide repeat of succinyl-transferase DegT_DnrJ_EryC1 PF01041.17 gi|336254433|ref|YP_004597540.1| - 1.7e-127 425.7 0.0 1.9e-127 425.5 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.21 gi|336254433|ref|YP_004597540.1| - 1.7e-08 34.1 0.0 2.5e-08 33.5 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|336254433|ref|YP_004597540.1| - 6e-05 22.5 0.0 0.00015 21.1 0.0 1.6 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.19 gi|336254433|ref|YP_004597540.1| - 0.00032 19.8 0.0 0.00049 19.2 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|336254433|ref|YP_004597540.1| - 0.015 13.9 0.0 0.024 13.2 0.0 1.3 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme GFO_IDH_MocA PF01408.22 gi|336254434|ref|YP_004597541.1| - 1.2e-26 93.9 0.2 2.3e-26 93.0 0.2 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold 2-Hacid_dh_C PF02826.19 gi|336254434|ref|YP_004597541.1| - 4e-07 29.6 0.0 8.1e-07 28.6 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|336254434|ref|YP_004597541.1| - 2.9e-06 27.7 0.0 7.2e-06 26.5 0.0 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|336254434|ref|YP_004597541.1| - 4.9e-05 23.6 0.4 0.0005 20.3 0.1 2.2 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.12 gi|336254434|ref|YP_004597541.1| - 7e-05 22.5 0.0 0.00015 21.4 0.0 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain Semialdhyde_dh PF01118.24 gi|336254434|ref|YP_004597541.1| - 0.001 19.5 0.1 0.0022 18.4 0.1 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain DapB_N PF01113.20 gi|336254434|ref|YP_004597541.1| - 0.01 16.0 0.4 0.01 16.0 0.4 1.7 2 0 0 2 2 2 0 Dihydrodipicolinate reductase, N-terminus DUF5340 PF17275.2 gi|336254434|ref|YP_004597541.1| - 0.033 14.3 0.3 0.26 11.4 0.1 2.2 2 0 0 2 2 2 0 Family of unknown function (DUF5340) Sacchrp_dh_NADP PF03435.18 gi|336254434|ref|YP_004597541.1| - 0.056 13.7 1.3 0.26 11.5 1.3 2.2 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain UDPG_MGDP_dh_N PF03721.14 gi|336254435|ref|YP_004597542.1| - 3.9e-41 140.7 0.1 6.5e-41 140.0 0.1 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh_C PF03720.15 gi|336254435|ref|YP_004597542.1| - 4e-20 72.2 0.1 1.8e-19 70.1 0.0 2.1 3 0 0 3 3 3 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain UDPG_MGDP_dh PF00984.19 gi|336254435|ref|YP_004597542.1| - 3.1e-18 65.8 0.0 5.9e-18 64.9 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain NAD_binding_2 PF03446.15 gi|336254435|ref|YP_004597542.1| - 8.4e-07 29.3 0.1 2.7e-06 27.6 0.1 1.9 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase TrkA_N PF02254.18 gi|336254435|ref|YP_004597542.1| - 0.00059 20.1 0.7 0.0038 17.5 0.7 2.5 1 0 0 1 1 1 1 TrkA-N domain NAD_Gly3P_dh_N PF01210.23 gi|336254435|ref|YP_004597542.1| - 0.00067 19.7 0.1 0.0034 17.4 0.0 2.1 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.18 gi|336254435|ref|YP_004597542.1| - 0.011 15.6 0.2 0.02 14.8 0.2 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Glycos_transf_2 PF00535.26 gi|336254436|ref|YP_004597543.1| - 4.1e-19 69.0 0.0 7.2e-19 68.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|336254436|ref|YP_004597543.1| - 6.3e-05 23.0 0.2 0.0002 21.3 0.2 1.7 1 1 0 1 1 1 1 Glycosyltransferase like family 2 zf-ribbon_3 PF13248.6 gi|336254437|ref|YP_004597544.1| - 6.1e-06 25.4 4.4 1e-05 24.8 4.4 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|336254437|ref|YP_004597544.1| - 3.2e-05 23.5 3.6 4.5e-05 23.0 3.6 1.2 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|336254437|ref|YP_004597544.1| - 5.8e-05 23.0 0.7 6.6e-05 22.9 0.7 1.1 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_15 PF17032.5 gi|336254437|ref|YP_004597544.1| - 0.00024 21.8 0.2 0.00025 21.8 0.2 1.1 1 0 0 1 1 1 1 zinc-ribbon family HypA PF01155.19 gi|336254437|ref|YP_004597544.1| - 0.00058 19.9 0.6 0.00073 19.5 0.6 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TFIIS_C PF01096.18 gi|336254437|ref|YP_004597544.1| - 0.0037 17.1 0.4 2.7 7.9 0.0 2.2 2 0 0 2 2 2 2 Transcription factor S-II (TFIIS) Zn-ribbon_8 PF09723.10 gi|336254437|ref|YP_004597544.1| - 0.019 15.1 4.7 0.062 13.4 4.7 1.8 1 1 0 1 1 1 0 Zinc ribbon domain UPF0547 PF10571.9 gi|336254437|ref|YP_004597544.1| - 0.029 14.5 1.7 0.048 13.7 1.7 1.3 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 TackOD1 PF18551.1 gi|336254437|ref|YP_004597544.1| - 0.043 13.5 0.2 0.053 13.2 0.2 1.1 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 TF_Zn_Ribbon PF08271.12 gi|336254437|ref|YP_004597544.1| - 0.046 13.2 2.7 0.81 9.2 0.1 2.3 1 1 1 2 2 2 0 TFIIB zinc-binding RNA_POL_M_15KD PF02150.16 gi|336254437|ref|YP_004597544.1| - 0.072 13.0 1.6 0.33 10.8 0.1 2.1 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit NRDD PF13597.6 gi|336254437|ref|YP_004597544.1| - 0.076 11.8 1.1 0.092 11.5 1.1 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase OrfB_Zn_ribbon PF07282.11 gi|336254437|ref|YP_004597544.1| - 0.097 12.6 4.2 0.28 11.1 4.0 1.7 1 1 1 2 2 2 0 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.7 gi|336254437|ref|YP_004597544.1| - 0.099 12.6 2.0 0.92 9.5 0.0 2.2 1 1 0 2 2 2 0 Transposase zinc-ribbon domain zf-RRN7 PF11781.8 gi|336254437|ref|YP_004597544.1| - 0.12 12.1 3.2 1.3 8.8 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Prim_Zn_Ribbon PF08273.12 gi|336254437|ref|YP_004597544.1| - 0.32 11.3 5.7 1.9 8.9 0.8 2.4 1 1 1 2 2 2 0 Zinc-binding domain of primase-helicase DUF35_N PF12172.8 gi|336254437|ref|YP_004597544.1| - 0.42 10.5 5.0 2.2 8.2 5.0 1.9 1 1 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Rubredoxin_2 PF18073.1 gi|336254437|ref|YP_004597544.1| - 2.3 8.0 6.1 10 5.9 6.1 1.9 1 1 0 1 1 1 0 Rubredoxin metal binding domain zf-ISL3 PF14690.6 gi|336254437|ref|YP_004597544.1| - 2.8 8.7 5.1 8.8 7.1 0.3 2.2 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Glyco_trans_1_4 PF13692.6 gi|336254438|ref|YP_004597545.1| - 4e-11 43.5 0.0 7.6e-11 42.6 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|336254438|ref|YP_004597545.1| - 1.7e-10 40.7 0.0 2.8e-10 40.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|336254438|ref|YP_004597545.1| - 2.3e-08 34.2 0.0 5.8e-08 32.9 0.0 1.7 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|336254438|ref|YP_004597545.1| - 2.8e-08 34.4 0.3 7.5e-08 33.0 0.1 1.8 1 1 1 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|336254438|ref|YP_004597545.1| - 0.00046 20.2 0.0 0.00098 19.2 0.0 1.6 1 1 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.6 gi|336254438|ref|YP_004597545.1| - 0.0038 17.6 0.0 0.0077 16.6 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 DUF1129 PF06570.11 gi|336254440|ref|YP_004597547.1| - 0.017 14.6 0.2 0.021 14.3 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) ADH_N PF08240.12 gi|336254441|ref|YP_004597548.1| - 1.1e-28 99.3 0.1 2.5e-28 98.1 0.1 1.6 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|336254441|ref|YP_004597548.1| - 7.2e-20 71.3 0.1 8.2e-15 54.9 0.0 2.3 2 0 0 2 2 2 2 Zinc-binding dehydrogenase ADH_N_assoc PF13823.6 gi|336254441|ref|YP_004597548.1| - 9e-10 38.3 0.4 2e-09 37.2 0.4 1.6 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-associated AlaDh_PNT_C PF01262.21 gi|336254441|ref|YP_004597548.1| - 0.04 13.2 0.0 0.063 12.6 0.0 1.2 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Methyltransf_25 PF13649.6 gi|336254441|ref|YP_004597548.1| - 0.059 14.1 0.1 0.16 12.7 0.1 1.8 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_11 PF08241.12 gi|336254441|ref|YP_004597548.1| - 0.12 13.0 0.0 0.94 10.2 0.0 2.2 1 1 0 1 1 1 0 Methyltransferase domain Epimerase PF01370.21 gi|336254442|ref|YP_004597549.1| - 1.2e-32 113.3 0.0 2e-32 112.6 0.0 1.4 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|336254442|ref|YP_004597549.1| - 3.7e-24 85.2 0.0 4.9e-24 84.8 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family GDP_Man_Dehyd PF16363.5 gi|336254442|ref|YP_004597549.1| - 4.8e-22 78.8 0.0 9.3e-22 77.8 0.0 1.4 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase NAD_binding_10 PF13460.6 gi|336254442|ref|YP_004597549.1| - 2.6e-19 69.8 0.0 3.7e-19 69.3 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding NAD_binding_4 PF07993.12 gi|336254442|ref|YP_004597549.1| - 3.2e-18 65.8 0.0 3.7e-11 42.7 0.0 2.2 2 0 0 2 2 2 2 Male sterility protein RmlD_sub_bind PF04321.17 gi|336254442|ref|YP_004597549.1| - 8.7e-11 41.4 0.0 1.3e-10 40.9 0.0 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain NmrA PF05368.13 gi|336254442|ref|YP_004597549.1| - 1.7e-08 34.3 0.0 3.3e-08 33.4 0.0 1.5 2 0 0 2 2 2 1 NmrA-like family Polysacc_synt_2 PF02719.15 gi|336254442|ref|YP_004597549.1| - 4.1e-07 29.4 0.0 8.8e-07 28.3 0.0 1.5 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein adh_short PF00106.25 gi|336254442|ref|YP_004597549.1| - 1.5e-05 24.6 0.0 0.00017 21.1 0.0 2.3 1 1 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|336254442|ref|YP_004597549.1| - 0.098 12.6 0.0 0.23 11.4 0.0 1.5 1 1 0 1 1 1 0 KR domain TrkA_N PF02254.18 gi|336254442|ref|YP_004597549.1| - 0.13 12.6 0.0 0.39 11.0 0.0 1.7 2 0 0 2 2 2 0 TrkA-N domain DUF362 PF04015.12 gi|336254443|ref|YP_004597550.1| - 2e-06 28.2 0.0 3.3e-06 27.5 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF362) GFO_IDH_MocA PF01408.22 gi|336254444|ref|YP_004597551.1| - 2.2e-23 83.4 0.4 4.3e-23 82.4 0.4 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|336254444|ref|YP_004597551.1| - 1.6e-08 34.6 0.0 5.6e-08 32.8 0.0 1.9 2 0 0 2 2 2 1 Oxidoreductase family, C-terminal alpha/beta domain Sacchrp_dh_NADP PF03435.18 gi|336254444|ref|YP_004597551.1| - 0.0018 18.5 0.1 0.0051 17.1 0.1 1.8 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain 2-Hacid_dh_C PF02826.19 gi|336254444|ref|YP_004597551.1| - 0.007 15.7 0.2 0.051 12.9 0.0 2.2 1 1 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CoA_binding PF02629.19 gi|336254444|ref|YP_004597551.1| - 0.011 16.4 0.1 0.029 15.1 0.1 1.7 1 0 0 1 1 1 0 CoA binding domain ADH_zinc_N PF00107.26 gi|336254444|ref|YP_004597551.1| - 0.024 14.6 0.6 0.056 13.4 0.5 1.7 1 1 1 2 2 2 0 Zinc-binding dehydrogenase Gp_dh_N PF00044.24 gi|336254444|ref|YP_004597551.1| - 0.11 12.9 0.0 0.18 12.2 0.0 1.4 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Semialdhyde_dh PF01118.24 gi|336254444|ref|YP_004597551.1| - 0.12 12.8 0.1 0.21 12.0 0.1 1.5 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain CoA_binding_2 PF13380.6 gi|336254444|ref|YP_004597551.1| - 0.14 12.7 0.5 0.29 11.6 0.5 1.5 1 0 0 1 1 1 0 CoA binding domain NAD_binding_3 PF03447.16 gi|336254444|ref|YP_004597551.1| - 0.16 12.6 1.4 0.32 11.7 1.4 1.5 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain Polysacc_deac_1 PF01522.21 gi|336254445|ref|YP_004597552.1| - 2e-06 27.7 0.0 4e-06 26.7 0.0 1.5 1 0 0 1 1 1 1 Polysaccharide deacetylase Phosphodiest PF01663.22 gi|336254446|ref|YP_004597553.1| - 4.2e-48 164.7 0.6 2e-46 159.2 0.6 2.1 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase OppC_N PF12911.7 gi|336254448|ref|YP_004597555.1| - 0.11 12.5 0.0 0.11 12.5 0.0 4.5 5 0 0 5 5 5 0 N-terminal TM domain of oligopeptide transport permease C CoA_transf_3 PF02515.17 gi|336254449|ref|YP_004597556.1| - 1.5e-124 415.9 0.0 1.7e-124 415.7 0.0 1.0 1 0 0 1 1 1 1 CoA-transferase family III Acetyltransf_9 PF13527.7 gi|336254450|ref|YP_004597557.1| - 1e-20 74.1 0.0 3.1e-19 69.3 0.0 2.4 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|336254450|ref|YP_004597557.1| - 0.0059 16.8 0.0 0.32 11.3 0.0 2.4 2 0 0 2 2 2 1 Acetyltransferase (GNAT) family SPDY PF03771.16 gi|336254450|ref|YP_004597557.1| - 0.27 11.2 3.1 0.19 11.7 0.6 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF317) TAT_signal PF10518.9 gi|336254451|ref|YP_004597558.1| - 0.21 11.5 4.4 0.41 10.6 4.4 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence TAT_signal PF10518.9 gi|336254452|ref|YP_004597559.1| - 0.055 13.3 6.7 0.12 12.2 6.7 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence MRP-S35 PF10246.9 gi|336254452|ref|YP_004597559.1| - 0.11 12.5 0.0 0.22 11.5 0.0 1.4 1 0 0 1 1 1 0 Mitochondrial ribosomal protein MRP-S35 DUF4957 PF16318.5 gi|336254452|ref|YP_004597559.1| - 0.23 11.4 0.4 0.52 10.3 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4957) TFIIB PF00382.19 gi|336254453|ref|YP_004597560.1| - 2.6e-36 123.5 0.1 9.1e-18 64.1 0.0 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|336254453|ref|YP_004597560.1| - 1.1e-16 60.0 3.4 2.2e-16 59.1 3.4 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding Cyclin_N PF00134.23 gi|336254453|ref|YP_004597560.1| - 0.0055 16.5 0.0 0.012 15.4 0.0 1.6 1 0 0 1 1 1 1 Cyclin, N-terminal domain Ribosomal_S27e PF01667.17 gi|336254453|ref|YP_004597560.1| - 0.016 14.9 0.2 0.034 13.9 0.2 1.4 1 0 0 1 1 1 0 Ribosomal protein S27 A2L_zn_ribbon PF08792.10 gi|336254453|ref|YP_004597560.1| - 0.065 13.0 0.6 0.21 11.3 0.6 1.9 1 1 0 1 1 1 0 A2L zinc ribbon domain zf-ribbon_3 PF13248.6 gi|336254453|ref|YP_004597560.1| - 0.11 11.9 0.5 4.7 6.8 0.0 2.4 2 0 0 2 2 2 0 zinc-ribbon domain HIP1_clath_bdg PF16515.5 gi|336254453|ref|YP_004597560.1| - 0.16 12.6 0.7 41 4.9 0.1 2.9 3 0 0 3 3 3 0 Clathrin-binding domain of Huntingtin-interacting protein 1 DZR PF12773.7 gi|336254453|ref|YP_004597560.1| - 0.18 11.8 1.0 0.59 10.2 1.0 1.8 1 1 0 1 1 1 0 Double zinc ribbon GATA PF00320.27 gi|336254453|ref|YP_004597560.1| - 1.4 8.6 4.2 9 6.0 1.0 2.9 2 1 1 3 3 3 0 GATA zinc finger HUN PF08729.10 gi|336254454|ref|YP_004597561.1| - 0.023 14.7 1.7 0.028 14.4 1.7 1.1 1 0 0 1 1 1 0 HPC2 and ubinuclein domain TAT_signal PF10518.9 gi|336254455|ref|YP_004597562.1| - 0.067 13.1 1.1 0.14 12.1 1.1 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Colicin_E5 PF12106.8 gi|336254455|ref|YP_004597562.1| - 0.11 12.8 0.1 0.17 12.2 0.1 1.2 1 0 0 1 1 1 0 Colicin E5 ribonuclease domain ERCC3_RAD25_C PF16203.5 gi|336254456|ref|YP_004597563.1| - 2.1e-25 89.4 0.0 3.4e-25 88.7 0.0 1.2 1 0 0 1 1 1 1 ERCC3/RAD25/XPB C-terminal helicase ResIII PF04851.15 gi|336254456|ref|YP_004597563.1| - 3.6e-13 49.9 0.0 8.3e-13 48.7 0.0 1.7 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|336254456|ref|YP_004597563.1| - 2.7e-12 47.0 0.0 1.7e-11 44.5 0.0 2.1 2 0 0 2 2 2 1 Helicase conserved C-terminal domain SNF2_N PF00176.23 gi|336254456|ref|YP_004597563.1| - 3.1e-12 45.9 0.0 3.9e-12 45.6 0.0 1.2 1 0 0 1 1 1 1 SNF2 family N-terminal domain DEAD PF00270.29 gi|336254456|ref|YP_004597563.1| - 7.7e-07 29.0 0.0 7.5e-06 25.8 0.0 2.3 2 1 0 2 2 2 1 DEAD/DEAH box helicase AAA_33 PF13671.6 gi|336254456|ref|YP_004597563.1| - 0.0024 18.1 0.8 0.052 13.7 0.0 3.3 4 0 0 4 4 4 1 AAA domain MarR_2 PF12802.7 gi|336254456|ref|YP_004597563.1| - 0.0029 17.5 1.1 0.0077 16.1 0.5 2.1 2 0 0 2 2 2 1 MarR family AAA_30 PF13604.6 gi|336254456|ref|YP_004597563.1| - 0.0079 15.9 0.0 0.054 13.2 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_25 PF13481.6 gi|336254456|ref|YP_004597563.1| - 0.012 15.2 0.4 0.17 11.4 0.0 2.9 3 0 0 3 3 3 0 AAA domain AAA PF00004.29 gi|336254456|ref|YP_004597563.1| - 0.14 12.6 0.0 0.31 11.5 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DUF4283 PF14111.6 gi|336254456|ref|YP_004597563.1| - 0.17 11.4 0.0 0.3 10.6 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4283) DUF87 PF01935.17 gi|336254458|ref|YP_004597565.1| - 1.2e-10 41.9 0.0 1.2e-10 41.9 0.0 2.7 2 1 0 2 2 1 1 Helicase HerA, central domain SlyX PF04102.12 gi|336254458|ref|YP_004597565.1| - 1.4e-06 28.8 19.8 4.7e-06 27.1 6.3 2.9 2 0 0 2 2 2 1 SlyX DUF853 PF05872.12 gi|336254458|ref|YP_004597565.1| - 5.8e-06 25.2 0.1 0.00055 18.7 0.0 2.4 2 1 0 2 2 2 1 Bacterial protein of unknown function (DUF853) TMF_DNA_bd PF12329.8 gi|336254458|ref|YP_004597565.1| - 0.00078 19.4 4.7 0.00078 19.4 4.7 3.0 3 0 0 3 3 2 1 TATA element modulatory factor 1 DNA binding FlaC_arch PF05377.11 gi|336254458|ref|YP_004597565.1| - 0.00088 19.6 12.4 0.049 14.0 0.5 3.0 3 0 0 3 3 2 2 Flagella accessory protein C (FlaC) CbiA PF01656.23 gi|336254458|ref|YP_004597565.1| - 0.0015 18.6 0.0 0.0029 17.7 0.0 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain APS_kinase PF01583.20 gi|336254458|ref|YP_004597565.1| - 0.0032 17.4 0.1 0.011 15.7 0.0 1.9 2 0 0 2 2 1 1 Adenylylsulphate kinase Fib_alpha PF08702.10 gi|336254458|ref|YP_004597565.1| - 0.0067 16.6 5.2 0.014 15.6 4.4 1.9 1 1 0 1 1 1 1 Fibrinogen alpha/beta chain family AAA_16 PF13191.6 gi|336254458|ref|YP_004597565.1| - 0.0077 16.6 0.0 0.0077 16.6 0.0 2.9 2 1 0 2 2 1 1 AAA ATPase domain AAA PF00004.29 gi|336254458|ref|YP_004597565.1| - 0.013 16.0 0.0 0.082 13.3 0.0 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_13 PF13166.6 gi|336254458|ref|YP_004597565.1| - 0.014 14.0 7.8 0.028 13.1 7.8 1.4 1 0 0 1 1 1 0 AAA domain Wtap PF17098.5 gi|336254458|ref|YP_004597565.1| - 0.016 15.1 15.5 0.051 13.5 14.9 2.0 1 1 0 1 1 1 0 WTAP/Mum2p family DUF4795 PF16043.5 gi|336254458|ref|YP_004597565.1| - 0.022 14.4 6.4 0.67 9.5 0.5 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4795) Med9 PF07544.13 gi|336254458|ref|YP_004597565.1| - 0.039 14.0 11.8 0.37 10.9 0.9 3.0 3 0 0 3 3 2 0 RNA polymerase II transcription mediator complex subunit 9 KxDL PF10241.9 gi|336254458|ref|YP_004597565.1| - 0.043 14.1 6.0 2.7 8.3 0.6 2.5 2 0 0 2 2 2 0 Uncharacterized conserved protein AAA_10 PF12846.7 gi|336254458|ref|YP_004597565.1| - 0.048 12.6 2.1 0.45 9.4 0.0 2.8 2 1 1 3 3 3 0 AAA-like domain AAA_31 PF13614.6 gi|336254458|ref|YP_004597565.1| - 0.072 13.0 0.4 0.17 11.8 0.0 1.8 2 0 0 2 2 1 0 AAA domain ATPase_2 PF01637.18 gi|336254458|ref|YP_004597565.1| - 0.073 13.0 0.6 12 5.8 0.0 2.6 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea Phage_GP20 PF06810.11 gi|336254458|ref|YP_004597565.1| - 0.14 11.9 13.3 0.067 13.0 2.5 3.0 3 0 0 3 3 3 0 Phage minor structural protein GP20 CLP1_P PF16575.5 gi|336254458|ref|YP_004597565.1| - 0.19 11.5 0.0 1 9.1 0.0 2.2 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop BRE1 PF08647.11 gi|336254458|ref|YP_004597565.1| - 0.23 11.6 11.4 1.4 9.0 0.5 2.7 2 0 0 2 2 2 0 BRE1 E3 ubiquitin ligase AAA_18 PF13238.6 gi|336254458|ref|YP_004597565.1| - 0.25 11.9 0.0 0.25 11.9 0.0 2.7 2 1 0 2 2 1 0 AAA domain DUF4407 PF14362.6 gi|336254458|ref|YP_004597565.1| - 0.29 10.4 18.1 0.013 14.9 12.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4407) AAA_22 PF13401.6 gi|336254458|ref|YP_004597565.1| - 0.3 11.4 1.5 0.45 10.8 0.0 2.0 3 0 0 3 3 1 0 AAA domain ArsA_ATPase PF02374.15 gi|336254458|ref|YP_004597565.1| - 0.32 10.1 0.0 0.32 10.1 0.0 2.0 2 1 0 2 2 2 0 Anion-transporting ATPase DUF16 PF01519.16 gi|336254458|ref|YP_004597565.1| - 0.39 11.2 10.9 0.99 9.9 0.8 2.7 1 1 1 2 2 2 0 Protein of unknown function DUF16 Baculo_PEP_C PF04513.12 gi|336254458|ref|YP_004597565.1| - 0.52 10.3 2.2 7.4 6.6 0.1 2.5 2 0 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus ABC_tran_CTD PF16326.5 gi|336254458|ref|YP_004597565.1| - 0.55 10.5 30.7 0.96 9.7 8.5 3.2 2 1 0 2 2 2 0 ABC transporter C-terminal domain TMPIT PF07851.13 gi|336254458|ref|YP_004597565.1| - 0.87 8.8 3.1 16 4.7 0.1 2.1 2 0 0 2 2 2 0 TMPIT-like protein DUF1664 PF07889.12 gi|336254458|ref|YP_004597565.1| - 0.99 9.4 11.6 3.5 7.7 2.1 2.4 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) DUF2570 PF10828.8 gi|336254458|ref|YP_004597565.1| - 1 9.2 4.3 0.34 10.8 0.3 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2570) Ead_Ea22 PF13935.6 gi|336254458|ref|YP_004597565.1| - 1.1 10.0 20.4 77 3.9 15.1 3.2 2 1 0 2 2 2 0 Ead/Ea22-like protein SHE3 PF17078.5 gi|336254458|ref|YP_004597565.1| - 1.1 9.0 18.3 0.17 11.6 5.4 2.4 1 1 1 2 2 2 0 SWI5-dependent HO expression protein 3 Prefoldin_2 PF01920.20 gi|336254458|ref|YP_004597565.1| - 1.4 8.9 22.7 1.9 8.5 8.7 3.2 2 1 1 3 3 3 0 Prefoldin subunit CENP-F_leu_zip PF10473.9 gi|336254458|ref|YP_004597565.1| - 1.6 8.7 27.3 60 3.6 27.3 2.5 1 1 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF4094 PF13334.6 gi|336254458|ref|YP_004597565.1| - 1.8 9.1 3.4 27 5.3 0.2 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4094) MscS_porin PF12795.7 gi|336254458|ref|YP_004597565.1| - 1.9 8.0 25.9 0.03 13.9 18.2 1.7 2 0 0 2 2 2 0 Mechanosensitive ion channel porin domain TSNAXIP1_N PF15739.5 gi|336254458|ref|YP_004597565.1| - 2 8.9 9.8 3.4 8.1 1.0 3.6 3 0 0 3 3 3 0 Translin-associated factor X-interacting N-terminus ADIP PF11559.8 gi|336254458|ref|YP_004597565.1| - 3.1 7.9 20.6 4.2 7.4 6.9 2.7 1 1 1 2 2 2 0 Afadin- and alpha -actinin-Binding COG2 PF06148.11 gi|336254458|ref|YP_004597565.1| - 3.2 7.9 11.3 6.1 6.9 1.6 2.7 2 0 0 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 YabA PF06156.13 gi|336254458|ref|YP_004597565.1| - 3.2 8.4 10.7 0.14 12.8 0.4 2.7 3 0 0 3 3 2 0 Initiation control protein YabA DUF4446 PF14584.6 gi|336254458|ref|YP_004597565.1| - 3.7 7.5 6.2 4.8 7.2 0.8 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF4446) CorA PF01544.18 gi|336254458|ref|YP_004597565.1| - 5.4 6.2 11.7 7.8 5.7 4.7 2.4 2 0 0 2 2 2 0 CorA-like Mg2+ transporter protein V_ATPase_I PF01496.19 gi|336254458|ref|YP_004597565.1| - 6 4.7 10.9 9 4.1 1.1 2.0 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family Prefoldin PF02996.17 gi|336254458|ref|YP_004597565.1| - 6.5 6.7 14.5 8.6 6.3 3.4 3.2 2 1 1 3 3 3 0 Prefoldin subunit PilO PF04350.13 gi|336254458|ref|YP_004597565.1| - 6.7 6.9 7.6 57 3.9 1.1 3.2 2 1 0 3 3 3 0 Pilus assembly protein, PilO Exonuc_VII_L PF02601.15 gi|336254458|ref|YP_004597565.1| - 6.8 6.2 9.7 0.31 10.6 4.0 1.6 2 0 0 2 2 1 0 Exonuclease VII, large subunit RasGAP_C PF03836.15 gi|336254458|ref|YP_004597565.1| - 7.2 6.8 9.3 1.3 9.2 1.8 2.4 2 0 0 2 2 2 0 RasGAP C-terminus KLRAQ PF10205.9 gi|336254458|ref|YP_004597565.1| - 7.3 6.9 9.9 14 6.0 1.9 2.6 2 0 0 2 2 2 0 Predicted coiled-coil domain-containing protein HPP PF04982.13 gi|336254459|ref|YP_004597566.1| - 0.0017 18.6 0.4 0.0017 18.6 0.4 1.0 1 0 0 1 1 1 1 HPP family DegT_DnrJ_EryC1 PF01041.17 gi|336254460|ref|YP_004597567.1| - 5.7e-15 55.5 0.0 4.5e-12 46.0 0.0 2.1 2 0 0 2 2 2 2 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.21 gi|336254460|ref|YP_004597567.1| - 0.00032 20.0 0.0 0.00058 19.1 0.0 1.3 1 1 0 1 1 1 1 Aminotransferase class I and II Phosphodiest PF01663.22 gi|336254461|ref|YP_004597568.1| - 2.6e-37 129.2 0.0 9.9e-36 124.1 0.0 2.0 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Acetyltransf_6 PF13480.7 gi|336254462|ref|YP_004597569.1| - 3.1e-19 69.5 1.3 4.3e-19 69.1 0.1 1.9 3 0 0 3 3 3 1 Acetyltransferase (GNAT) domain FemAB PF02388.16 gi|336254462|ref|YP_004597569.1| - 5.1e-06 25.6 0.0 0.00058 18.9 0.0 2.1 2 0 0 2 2 2 2 FemAB family bPH_2 PF03703.14 gi|336254463|ref|YP_004597570.1| - 0.003 17.7 0.3 0.0059 16.8 0.3 1.4 1 0 0 1 1 1 1 Bacterial PH domain MarR PF01047.22 gi|336254464|ref|YP_004597571.1| - 0.00025 20.9 0.0 0.00034 20.5 0.0 1.2 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|336254464|ref|YP_004597571.1| - 0.00049 19.9 0.1 0.00065 19.5 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|336254464|ref|YP_004597571.1| - 0.0022 17.5 0.0 0.0034 16.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TFIIE_alpha PF02002.17 gi|336254464|ref|YP_004597571.1| - 0.0065 16.3 0.0 0.0079 16.0 0.0 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_Crp_2 PF13545.6 gi|336254464|ref|YP_004597571.1| - 0.011 15.7 0.0 0.013 15.4 0.0 1.2 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_20 PF12840.7 gi|336254464|ref|YP_004597571.1| - 0.013 15.6 0.0 0.02 15.0 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_36 PF13730.6 gi|336254464|ref|YP_004597571.1| - 0.026 14.5 0.0 0.49 10.4 0.0 2.1 1 1 0 1 1 1 0 Helix-turn-helix domain TrmB PF01978.19 gi|336254464|ref|YP_004597571.1| - 0.042 13.7 0.1 0.058 13.3 0.1 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_28 PF13518.6 gi|336254464|ref|YP_004597571.1| - 0.09 12.9 0.0 0.17 12.1 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2582 PF10771.9 gi|336254464|ref|YP_004597571.1| - 0.12 12.6 0.0 0.16 12.1 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix domain (DUF2582) RecA PF00154.21 gi|336254464|ref|YP_004597571.1| - 0.16 11.4 0.0 0.17 11.3 0.0 1.1 1 0 0 1 1 1 0 recA bacterial DNA recombination protein PGM_PMM_I PF02878.16 gi|336254465|ref|YP_004597572.1| - 2.3e-33 114.8 0.0 5.9e-33 113.5 0.0 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_III PF02880.16 gi|336254465|ref|YP_004597572.1| - 8.3e-22 77.5 0.0 1.6e-21 76.7 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_II PF02879.16 gi|336254465|ref|YP_004597572.1| - 2.9e-21 76.0 2.1 8.3e-21 74.6 0.2 2.5 3 0 0 3 3 3 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.20 gi|336254465|ref|YP_004597572.1| - 2.6e-14 53.1 1.1 1e-13 51.2 1.1 2.0 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain Asp_protease_2 PF13650.6 gi|336254465|ref|YP_004597572.1| - 0.089 13.4 0.0 0.26 12.0 0.0 1.8 1 0 0 1 1 1 0 Aspartyl protease CinA_KH PF18146.1 gi|336254465|ref|YP_004597572.1| - 0.093 12.9 0.3 0.31 11.2 0.3 1.9 1 0 0 1 1 1 0 Damage-inducible protein CinA KH domain UPF0146 PF03686.13 gi|336254465|ref|YP_004597572.1| - 1.4 8.8 5.6 32 4.4 0.0 3.7 3 1 1 4 4 4 0 Uncharacterised protein family (UPF0146) DUF1610 PF07754.11 gi|336254466|ref|YP_004597573.1| - 0.0092 15.9 1.6 0.34 10.9 0.1 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF1610) Zn-ribbon_8 PF09723.10 gi|336254466|ref|YP_004597573.1| - 0.018 15.1 2.7 0.073 13.2 2.4 1.9 1 1 1 2 2 2 0 Zinc ribbon domain Vps36-NZF-N PF16988.5 gi|336254466|ref|YP_004597573.1| - 0.034 13.5 0.9 0.043 13.2 0.1 1.6 1 1 1 2 2 2 0 Vacuolar protein sorting 36 NZF-N zinc-finger domain RecR PF02132.15 gi|336254466|ref|YP_004597573.1| - 0.038 13.5 1.1 0.3 10.7 0.0 2.1 2 0 0 2 2 2 0 RecR protein DUF3268 PF11672.8 gi|336254466|ref|YP_004597573.1| - 0.05 13.9 0.2 0.063 13.6 0.2 1.1 1 0 0 1 1 1 0 zinc-finger-containing domain FdhE PF04216.12 gi|336254466|ref|YP_004597573.1| - 0.054 13.4 0.2 0.059 13.2 0.2 1.0 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation zinc_ribbon_9 PF14369.6 gi|336254466|ref|YP_004597573.1| - 0.075 13.3 1.3 5.8 7.3 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon Zn_ribbon_SprT PF17283.2 gi|336254466|ref|YP_004597573.1| - 0.085 12.8 5.1 0.35 10.8 0.4 2.1 2 0 0 2 2 2 0 SprT-like zinc ribbon domain DZR PF12773.7 gi|336254466|ref|YP_004597573.1| - 0.093 12.8 2.6 0.19 11.8 2.6 1.6 1 1 0 1 1 1 0 Double zinc ribbon zf-LITAF-like PF10601.9 gi|336254466|ref|YP_004597573.1| - 0.11 12.8 3.6 0.7 10.2 0.2 2.1 1 1 1 2 2 2 0 LITAF-like zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|336254466|ref|YP_004597573.1| - 0.12 12.1 2.6 1.4 8.8 0.3 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|336254466|ref|YP_004597573.1| - 0.14 11.7 2.7 0.57 9.7 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain NTP_transferase PF00483.23 gi|336254467|ref|YP_004597574.1| - 3.2e-37 128.4 0.0 8.3e-37 127.1 0.0 1.6 2 0 0 2 2 2 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|336254467|ref|YP_004597574.1| - 3.8e-16 59.9 0.4 5.5e-16 59.3 0.4 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.24 gi|336254467|ref|YP_004597574.1| - 2.2e-12 46.2 9.8 0.00037 20.1 0.4 4.6 5 1 1 6 6 6 3 Bacterial transferase hexapeptide (six repeats) IspD PF01128.19 gi|336254467|ref|YP_004597574.1| - 0.0017 18.2 0.0 0.0024 17.6 0.0 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Hexapep_2 PF14602.6 gi|336254467|ref|YP_004597574.1| - 0.0028 17.4 4.8 0.35 10.7 0.3 3.7 3 1 1 4 4 4 2 Hexapeptide repeat of succinyl-transferase Bactofilin PF04519.13 gi|336254467|ref|YP_004597574.1| - 0.04 14.2 1.5 0.085 13.2 1.5 1.5 1 0 0 1 1 1 0 Polymer-forming cytoskeletal Fucokinase PF07959.12 gi|336254467|ref|YP_004597574.1| - 0.041 12.8 0.0 0.1 11.5 0.0 1.5 1 1 1 2 2 2 0 L-fucokinase DUF4954 PF16314.5 gi|336254467|ref|YP_004597574.1| - 0.26 9.4 0.1 0.37 8.9 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4954) SIS PF01380.22 gi|336254468|ref|YP_004597575.1| - 3e-51 172.7 0.1 1.1e-24 86.8 0.6 2.6 3 0 0 3 3 3 2 SIS domain GATase_6 PF13522.6 gi|336254468|ref|YP_004597575.1| - 4.8e-22 78.6 0.2 1.6e-21 76.9 0.1 1.9 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|336254468|ref|YP_004597575.1| - 4e-18 65.5 0.0 8e-18 64.5 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.21 gi|336254468|ref|YP_004597575.1| - 0.012 14.4 0.0 0.029 13.1 0.0 1.6 1 1 1 2 2 2 0 Glutamine amidotransferases class-II GATase_4 PF13230.6 gi|336254468|ref|YP_004597575.1| - 0.014 14.3 0.0 0.023 13.6 0.0 1.2 1 0 0 1 1 1 0 Glutamine amidotransferases class-II SIS_2 PF13580.6 gi|336254468|ref|YP_004597575.1| - 0.028 14.4 0.1 2.6 8.0 0.0 2.4 2 0 0 2 2 2 0 SIS domain Na_H_Exchanger PF00999.21 gi|336254469|ref|YP_004597576.1| - 1.1e-45 156.1 50.8 1.5e-45 155.7 50.8 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Usp PF00582.26 gi|336254469|ref|YP_004597576.1| - 1.7e-13 51.3 2.5 1.7e-13 51.3 2.5 2.4 2 0 0 2 2 2 1 Universal stress protein family HTH_10 PF04967.12 gi|336254471|ref|YP_004597578.1| - 8.2e-19 67.2 0.0 1.4e-18 66.4 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|336254471|ref|YP_004597578.1| - 1e-12 48.2 6.0 1e-12 48.2 6.0 2.4 1 1 1 2 2 2 1 GAF and HTH_10 associated domain Sigma70_r4 PF04545.16 gi|336254471|ref|YP_004597578.1| - 2.7e-07 30.0 0.1 8.4e-07 28.4 0.1 1.8 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_24 PF13412.6 gi|336254471|ref|YP_004597578.1| - 7.7e-07 28.6 0.0 4.4e-06 26.1 0.1 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|336254471|ref|YP_004597578.1| - 2.5e-06 27.3 0.0 6.9e-06 25.9 0.0 1.8 1 0 0 1 1 1 1 MarR family HTH_3 PF01381.22 gi|336254471|ref|YP_004597578.1| - 3.2e-05 23.9 0.0 9.2e-05 22.4 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix HTH_AsnC-type PF13404.6 gi|336254471|ref|YP_004597578.1| - 0.00035 20.3 0.2 0.001 18.9 0.2 1.8 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|336254471|ref|YP_004597578.1| - 0.00037 20.1 0.2 0.0016 18.1 0.2 2.0 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_31 PF13560.6 gi|336254471|ref|YP_004597578.1| - 0.00038 20.8 1.0 0.012 15.9 0.1 3.1 3 0 0 3 3 3 1 Helix-turn-helix domain Phage_CI_repr PF07022.13 gi|336254471|ref|YP_004597578.1| - 0.00089 19.3 0.0 0.002 18.2 0.0 1.5 1 0 0 1 1 1 1 Bacteriophage CI repressor helix-turn-helix domain HTH_11 PF08279.12 gi|336254471|ref|YP_004597578.1| - 0.0033 17.3 0.0 0.0064 16.4 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_Crp_2 PF13545.6 gi|336254471|ref|YP_004597578.1| - 0.0037 17.2 0.0 0.011 15.7 0.0 1.8 2 0 0 2 2 1 1 Crp-like helix-turn-helix domain HTH_23 PF13384.6 gi|336254471|ref|YP_004597578.1| - 0.004 16.9 0.0 0.01 15.6 0.0 1.7 1 0 0 1 1 1 1 Homeodomain-like domain HTH_50 PF18024.1 gi|336254471|ref|YP_004597578.1| - 0.017 14.7 0.0 0.035 13.7 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain MarR PF01047.22 gi|336254471|ref|YP_004597578.1| - 0.022 14.6 0.0 0.042 13.8 0.0 1.5 1 0 0 1 1 1 0 MarR family P22_Cro PF14549.6 gi|336254471|ref|YP_004597578.1| - 0.038 13.8 0.0 0.081 12.8 0.0 1.5 1 0 0 1 1 1 0 DNA-binding transcriptional regulator Cro YdaS_antitoxin PF15943.5 gi|336254471|ref|YP_004597578.1| - 0.038 13.8 0.0 0.08 12.8 0.0 1.4 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT Sigma70_ECF PF07638.11 gi|336254471|ref|YP_004597578.1| - 0.041 13.8 0.0 0.064 13.1 0.0 1.3 1 0 0 1 1 1 0 ECF sigma factor Fe_dep_repress PF01325.19 gi|336254471|ref|YP_004597578.1| - 0.043 14.0 0.0 0.089 13.0 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_37 PF13744.6 gi|336254471|ref|YP_004597578.1| - 0.048 13.6 0.0 0.095 12.7 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain KORA PF16509.5 gi|336254471|ref|YP_004597578.1| - 0.048 13.9 0.0 0.13 12.6 0.0 1.7 1 0 0 1 1 1 0 TrfB plasmid transcriptional repressor HTH_5 PF01022.20 gi|336254471|ref|YP_004597578.1| - 0.048 13.5 0.0 0.12 12.3 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_1 PF00126.27 gi|336254471|ref|YP_004597578.1| - 0.082 12.9 0.0 0.3 11.1 0.0 1.9 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_36 PF13730.6 gi|336254471|ref|YP_004597578.1| - 0.12 12.4 0.0 0.28 11.2 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_38 PF13936.6 gi|336254471|ref|YP_004597578.1| - 0.12 12.2 0.3 0.38 10.6 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain UPF0122 PF04297.14 gi|336254471|ref|YP_004597578.1| - 0.12 12.6 0.0 0.22 11.8 0.0 1.3 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like LacI PF00356.21 gi|336254471|ref|YP_004597578.1| - 0.13 12.0 0.0 0.38 10.6 0.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory proteins, lacI family HTH_22 PF13309.6 gi|336254471|ref|YP_004597578.1| - 0.15 12.2 0.0 0.31 11.1 0.0 1.6 1 0 0 1 1 1 0 HTH domain HTH_19 PF12844.7 gi|336254471|ref|YP_004597578.1| - 0.2 11.7 0.0 0.74 9.9 0.0 2.0 2 0 0 2 2 1 0 Helix-turn-helix domain BAT PF15915.5 gi|336254472|ref|YP_004597579.1| - 3.3e-45 153.8 12.6 3.3e-45 153.8 12.6 5.9 6 1 0 6 6 6 1 GAF and HTH_10 associated domain PAS_4 PF08448.10 gi|336254472|ref|YP_004597579.1| - 3.2e-20 72.4 10.2 3.7e-07 30.4 0.2 4.6 3 0 0 3 3 3 3 PAS fold HTH_10 PF04967.12 gi|336254472|ref|YP_004597579.1| - 1.6e-17 63.0 0.0 5e-17 61.5 0.0 1.9 1 0 0 1 1 1 1 HTH DNA binding domain PAS PF00989.25 gi|336254472|ref|YP_004597579.1| - 1.5e-13 50.7 0.0 1.7e-10 40.9 0.0 2.8 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|336254472|ref|YP_004597579.1| - 2.1e-12 47.2 0.0 2.4e-06 27.7 0.0 3.6 3 1 0 3 3 3 2 PAS domain PAS_8 PF13188.7 gi|336254472|ref|YP_004597579.1| - 3.3e-12 46.1 0.3 0.00062 19.7 0.0 3.8 3 0 0 3 3 3 3 PAS domain PAS_3 PF08447.12 gi|336254472|ref|YP_004597579.1| - 1e-11 45.0 0.0 3.7e-10 39.9 0.0 2.6 2 0 0 2 2 2 1 PAS fold GAF_2 PF13185.6 gi|336254472|ref|YP_004597579.1| - 1.1e-11 45.2 16.6 6.9e-10 39.4 0.9 3.9 3 1 1 4 4 4 2 GAF domain GAF_3 PF13492.6 gi|336254472|ref|YP_004597579.1| - 6.1e-07 29.8 3.6 0.0073 16.7 0.1 3.4 2 2 0 2 2 2 2 GAF domain GAF PF01590.26 gi|336254472|ref|YP_004597579.1| - 0.00011 22.8 0.2 0.001 19.7 0.0 2.6 2 0 0 2 2 2 1 GAF domain Sigma70_ECF PF07638.11 gi|336254472|ref|YP_004597579.1| - 0.0048 16.8 0.0 0.017 15.0 0.0 2.0 1 0 0 1 1 1 1 ECF sigma factor Sigma70_r4 PF04545.16 gi|336254472|ref|YP_004597579.1| - 0.013 15.0 0.0 0.061 12.9 0.0 2.3 1 0 0 1 1 1 0 Sigma-70, region 4 PAS_11 PF14598.6 gi|336254472|ref|YP_004597579.1| - 0.028 14.5 0.0 0.056 13.6 0.0 1.4 1 0 0 1 1 1 0 PAS domain Response_reg PF00072.24 gi|336254472|ref|YP_004597579.1| - 0.038 14.2 0.2 0.1 12.8 0.0 1.8 2 0 0 2 2 1 0 Response regulator receiver domain Stealth_CR3 PF17102.5 gi|336254472|ref|YP_004597579.1| - 0.078 12.9 0.1 12 5.9 0.0 3.0 2 0 0 2 2 2 0 Stealth protein CR3, conserved region 3 HTH_5 PF01022.20 gi|336254472|ref|YP_004597579.1| - 0.13 12.2 0.0 0.32 10.9 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Usp PF00582.26 gi|336254473|ref|YP_004597580.1| - 1.7e-33 116.1 5.3 2e-33 115.9 5.3 1.0 1 0 0 1 1 1 1 Universal stress protein family DXP_reductoisom PF02670.16 gi|336254473|ref|YP_004597580.1| - 0.019 15.7 0.2 0.027 15.2 0.2 1.5 1 1 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase ProQ PF04352.13 gi|336254473|ref|YP_004597580.1| - 0.044 13.7 0.3 0.06 13.2 0.3 1.4 1 0 0 1 1 1 0 ProQ/FINO family DsbD PF02683.15 gi|336254475|ref|YP_004597582.1| - 4.1e-08 33.4 15.4 5.7e-08 32.9 15.4 1.2 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region Redoxin PF08534.10 gi|336254476|ref|YP_004597583.1| - 5.8e-13 48.8 0.0 7.3e-13 48.5 0.0 1.1 1 0 0 1 1 1 1 Redoxin AhpC-TSA PF00578.21 gi|336254476|ref|YP_004597583.1| - 1.8e-11 44.1 0.0 2.4e-11 43.6 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Thioredoxin PF00085.20 gi|336254476|ref|YP_004597583.1| - 2.1e-06 27.6 0.0 1.2e-05 25.2 0.0 1.9 2 0 0 2 2 2 1 Thioredoxin Thioredoxin_8 PF13905.6 gi|336254476|ref|YP_004597583.1| - 7.8e-06 26.1 0.0 1.5e-05 25.2 0.0 1.5 1 1 0 1 1 1 1 Thioredoxin-like Thioredoxin_7 PF13899.6 gi|336254476|ref|YP_004597583.1| - 0.019 15.1 0.0 0.029 14.6 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin-like TAT_signal PF10518.9 gi|336254476|ref|YP_004597583.1| - 1.6 8.7 5.0 2.8 7.9 5.0 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence SCO1-SenC PF02630.14 gi|336254477|ref|YP_004597584.1| - 1.6e-16 60.4 0.1 6.1e-15 55.3 0.0 2.1 2 0 0 2 2 2 1 SCO1/SenC AhpC-TSA PF00578.21 gi|336254477|ref|YP_004597584.1| - 0.0011 18.8 0.0 0.0016 18.3 0.0 1.3 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|336254477|ref|YP_004597584.1| - 0.0032 17.2 0.0 0.0046 16.7 0.0 1.2 1 0 0 1 1 1 1 Redoxin TAT_signal PF10518.9 gi|336254477|ref|YP_004597584.1| - 0.075 12.9 0.1 0.15 11.9 0.1 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence zf-ribbon_3 PF13248.6 gi|336254478|ref|YP_004597585.1| - 0.0011 18.3 3.4 0.048 13.1 0.6 2.1 2 0 0 2 2 2 2 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|336254478|ref|YP_004597585.1| - 0.012 15.8 3.4 1.7 8.9 0.6 2.2 2 0 0 2 2 2 0 Zinc ribbon domain zf-LITAF-like PF10601.9 gi|336254478|ref|YP_004597585.1| - 0.016 15.5 1.0 3.5 7.9 0.4 2.0 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain UPF0547 PF10571.9 gi|336254478|ref|YP_004597585.1| - 0.046 13.8 6.1 0.062 13.4 0.2 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 E7 PF00527.18 gi|336254478|ref|YP_004597585.1| - 0.11 12.7 2.2 2 8.7 0.1 2.0 1 1 1 2 2 2 0 E7 protein, Early protein CpXC PF14353.6 gi|336254478|ref|YP_004597585.1| - 0.14 12.2 1.5 11 6.0 0.0 2.0 2 0 0 2 2 2 0 CpXC protein Sgf11 PF08209.11 gi|336254478|ref|YP_004597585.1| - 0.15 11.6 4.2 2.3 7.9 0.1 2.3 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Peptidase_M24 PF00557.24 gi|336254479|ref|YP_004597586.1| - 2.3e-57 194.1 1.2 5.2e-57 192.9 1.2 1.6 1 1 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|336254479|ref|YP_004597586.1| - 2.2e-22 80.1 0.0 5e-22 79.0 0.0 1.6 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain Glyco_transf_20 PF00982.21 gi|336254480|ref|YP_004597587.1| - 1.7e-117 393.0 0.0 2e-117 392.8 0.0 1.0 1 0 0 1 1 1 1 Glycosyltransferase family 20 Glyco_trans_1_4 PF13692.6 gi|336254480|ref|YP_004597587.1| - 0.0012 19.2 0.0 0.0026 18.2 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|336254480|ref|YP_004597587.1| - 0.0041 16.7 0.0 0.019 14.5 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferases group 1 Trehalose_PPase PF02358.16 gi|336254481|ref|YP_004597588.1| - 1.5e-38 132.2 0.0 1.9e-38 131.9 0.0 1.1 1 0 0 1 1 1 1 Trehalose-phosphatase HTH_24 PF13412.6 gi|336254482|ref|YP_004597589.1| - 3.6e-08 32.8 0.0 5.4e-08 32.3 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|336254482|ref|YP_004597589.1| - 6e-05 22.8 0.0 0.00011 22.0 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|336254482|ref|YP_004597589.1| - 0.0011 18.8 0.0 0.0018 18.1 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF2250 PF10007.9 gi|336254482|ref|YP_004597589.1| - 0.002 18.2 0.0 0.0033 17.5 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_20 PF12840.7 gi|336254482|ref|YP_004597589.1| - 0.0073 16.3 0.0 0.01 15.8 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|336254482|ref|YP_004597589.1| - 0.0076 16.1 0.0 0.012 15.5 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_AsnC-type PF13404.6 gi|336254482|ref|YP_004597589.1| - 0.032 14.1 0.0 0.048 13.5 0.0 1.3 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain B-block_TFIIIC PF04182.12 gi|336254482|ref|YP_004597589.1| - 0.095 12.9 0.0 0.25 11.5 0.0 1.7 1 1 0 1 1 1 0 B-block binding subunit of TFIIIC MarR PF01047.22 gi|336254482|ref|YP_004597589.1| - 0.15 12.0 0.0 0.23 11.4 0.0 1.3 1 0 0 1 1 1 0 MarR family RelB_N PF18506.1 gi|336254482|ref|YP_004597589.1| - 1.1 9.2 3.9 6.3 6.7 0.1 2.6 3 0 0 3 3 3 0 RelB Antitoxin alpha helical domain Peptidase_M10 PF00413.24 gi|336254483|ref|YP_004597590.1| - 0.00019 21.3 0.0 0.00024 21.0 0.0 1.2 1 0 0 1 1 1 1 Matrixin Astacin PF01400.24 gi|336254483|ref|YP_004597590.1| - 0.00098 18.8 0.0 0.0014 18.2 0.0 1.2 1 0 0 1 1 1 1 Astacin (Peptidase family M12A) Peptidase_M66 PF10462.9 gi|336254483|ref|YP_004597590.1| - 0.0041 16.1 0.0 0.0056 15.7 0.0 1.2 1 0 0 1 1 1 1 Peptidase M66 Reprolysin_5 PF13688.6 gi|336254483|ref|YP_004597590.1| - 0.0052 17.0 0.0 0.008 16.3 0.0 1.3 1 0 0 1 1 1 1 Metallo-peptidase family M12 DUF4953 PF16313.5 gi|336254483|ref|YP_004597590.1| - 0.0075 15.5 1.3 0.012 14.9 1.3 1.2 1 0 0 1 1 1 1 Met-zincin Peptidase_M43 PF05572.13 gi|336254483|ref|YP_004597590.1| - 0.0083 16.0 0.0 0.013 15.4 0.0 1.2 1 0 0 1 1 1 1 Pregnancy-associated plasma protein-A Reprolysin_3 PF13582.6 gi|336254483|ref|YP_004597590.1| - 0.012 16.1 0.1 0.017 15.6 0.1 1.5 1 1 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Reprolysin_4 PF13583.6 gi|336254483|ref|YP_004597590.1| - 0.029 14.0 0.0 0.047 13.3 0.0 1.2 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Reprolysin_2 PF13574.6 gi|336254483|ref|YP_004597590.1| - 0.032 14.1 0.1 0.062 13.2 0.1 1.5 1 1 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Metallopep PF12044.8 gi|336254483|ref|YP_004597590.1| - 0.071 11.7 0.3 0.097 11.3 0.3 1.1 1 0 0 1 1 1 0 Putative peptidase family Peptidase_M57 PF12388.8 gi|336254483|ref|YP_004597590.1| - 0.19 11.3 1.3 0.31 10.6 1.3 1.2 1 0 0 1 1 1 0 Dual-action HEIGH metallo-peptidase AF-4 PF05110.13 gi|336254486|ref|YP_004597593.1| - 0.26 9.3 0.3 0.26 9.3 0.3 1.0 1 0 0 1 1 1 0 AF-4 proto-oncoprotein PALP PF00291.25 gi|336254488|ref|YP_004597595.1| - 3.1e-64 217.2 0.2 4.1e-64 216.8 0.2 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ADH_zinc_N PF00107.26 gi|336254488|ref|YP_004597595.1| - 0.005 16.8 0.2 0.011 15.8 0.2 1.7 1 1 0 1 1 1 1 Zinc-binding dehydrogenase Thioredoxin PF00085.20 gi|336254489|ref|YP_004597596.1| - 1.7e-07 31.2 0.0 2.1e-07 30.9 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_9 PF14595.6 gi|336254489|ref|YP_004597596.1| - 0.00085 19.1 0.0 0.0015 18.3 0.0 1.3 1 1 0 1 1 1 1 Thioredoxin Thioredoxin_3 PF13192.6 gi|336254489|ref|YP_004597596.1| - 0.022 14.8 0.0 0.035 14.2 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin domain Thioredoxin_7 PF13899.6 gi|336254489|ref|YP_004597596.1| - 0.046 13.9 0.0 0.062 13.5 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin-like Thioredoxin_8 PF13905.6 gi|336254489|ref|YP_004597596.1| - 0.048 14.0 0.0 3.7 7.9 0.0 2.2 1 1 1 2 2 2 0 Thioredoxin-like Thioredoxin_2 PF13098.6 gi|336254489|ref|YP_004597596.1| - 0.086 13.3 0.1 0.37 11.2 0.1 1.9 1 1 0 1 1 1 0 Thioredoxin-like domain AhpC-TSA PF00578.21 gi|336254489|ref|YP_004597596.1| - 0.12 12.3 0.0 0.32 10.9 0.0 1.8 1 1 0 1 1 1 0 AhpC/TSA family Metallophos_2 PF12850.7 gi|336254490|ref|YP_004597597.1| - 2.7e-11 43.9 0.0 0.00026 21.2 0.0 2.2 2 0 0 2 2 2 2 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|336254490|ref|YP_004597597.1| - 1.2e-09 39.0 0.2 4.8e-08 33.7 0.1 2.1 2 0 0 2 2 2 1 Calcineurin-like phosphoesterase Thioredox_DsbH PF03190.15 gi|336254491|ref|YP_004597598.1| - 1.5e-73 246.1 0.0 2.6e-73 245.4 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.6 gi|336254491|ref|YP_004597598.1| - 9.4e-11 41.7 0.0 2e-10 40.7 0.0 1.6 1 0 0 1 1 1 1 Thioredoxin-like GlcNAc_2-epim PF07221.11 gi|336254491|ref|YP_004597598.1| - 3.6e-08 33.0 0.2 0.0033 16.7 0.0 3.1 2 1 1 3 3 3 2 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) Glyco_hydro_88 PF07470.13 gi|336254491|ref|YP_004597598.1| - 0.00013 21.2 0.3 0.0018 17.4 0.0 2.6 3 1 0 3 3 3 1 Glycosyl Hydrolase Family 88 Glyco_hydro_76 PF03663.14 gi|336254491|ref|YP_004597598.1| - 0.0085 15.6 0.1 0.2 11.2 0.0 2.5 2 1 1 3 3 3 1 Glycosyl hydrolase family 76 C5-epim_C PF06662.13 gi|336254491|ref|YP_004597598.1| - 0.02 14.4 0.1 1.6 8.2 0.0 2.9 3 0 0 3 3 3 0 D-glucuronyl C5-epimerase C-terminus RNA_GG_bind PF10258.9 gi|336254491|ref|YP_004597598.1| - 0.11 12.6 0.0 0.23 11.6 0.0 1.5 1 0 0 1 1 1 0 PHAX RNA-binding domain cwf21 PF08312.12 gi|336254491|ref|YP_004597598.1| - 2 8.6 7.1 0.99 9.6 0.9 3.4 4 0 0 4 4 4 0 cwf21 domain Fructosamin_kin PF03881.14 gi|336254492|ref|YP_004597599.1| - 4.1e-54 183.7 0.0 5.5e-54 183.3 0.0 1.0 1 0 0 1 1 1 1 Fructosamine kinase APH PF01636.23 gi|336254492|ref|YP_004597599.1| - 3.9e-16 59.7 5.6 5e-16 59.3 5.6 1.2 1 0 0 1 1 1 1 Phosphotransferase enzyme family EcKinase PF02958.20 gi|336254492|ref|YP_004597599.1| - 0.11 11.8 0.0 0.19 11.0 0.0 1.4 1 0 0 1 1 1 0 Ecdysteroid kinase RIO1 PF01163.22 gi|336254492|ref|YP_004597599.1| - 0.14 11.7 0.0 4.4 6.9 0.0 2.1 2 0 0 2 2 2 0 RIO1 family DHFR_1 PF00186.19 gi|336254493|ref|YP_004597600.1| - 7.2e-49 165.6 0.0 8.5e-49 165.3 0.0 1.1 1 0 0 1 1 1 1 Dihydrofolate reductase ArAE_2 PF10334.9 gi|336254493|ref|YP_004597600.1| - 0.25 11.2 0.0 0.34 10.7 0.0 1.1 1 0 0 1 1 1 0 Aromatic acid exporter family member 2 Thymidylat_synt PF00303.19 gi|336254494|ref|YP_004597601.1| - 1.4e-95 319.4 0.0 1.8e-95 319.1 0.0 1.0 1 0 0 1 1 1 1 Thymidylate synthase RNase_H_2 PF13482.6 gi|336254495|ref|YP_004597602.1| - 2.7e-38 131.6 0.0 3.6e-38 131.2 0.0 1.2 1 0 0 1 1 1 1 RNase_H superfamily HHH_5 PF14520.6 gi|336254495|ref|YP_004597602.1| - 1.6e-10 41.4 0.0 3.9e-10 40.2 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix domain HHH PF00633.23 gi|336254495|ref|YP_004597602.1| - 0.00018 21.2 0.2 0.014 15.2 0.0 2.9 2 0 0 2 2 2 1 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.9 gi|336254495|ref|YP_004597602.1| - 0.02 14.7 0.0 0.072 12.9 0.0 1.9 1 1 0 1 1 1 0 Fingers domain of DNA polymerase lambda SnoaL_2 PF12680.7 gi|336254495|ref|YP_004597602.1| - 0.023 15.3 8.5 0.11 13.1 2.7 3.5 2 1 1 3 3 3 0 SnoaL-like domain HHH_2 PF12826.7 gi|336254495|ref|YP_004597602.1| - 0.067 13.3 0.0 0.15 12.2 0.0 1.5 1 0 0 1 1 1 0 Helix-hairpin-helix motif DEAD PF00270.29 gi|336254496|ref|YP_004597603.1| - 1.7e-20 73.5 0.0 2.2e-19 69.9 0.0 2.2 2 0 0 2 2 2 1 DEAD/DEAH box helicase DUF1998 PF09369.10 gi|336254496|ref|YP_004597603.1| - 7.6e-15 55.4 0.2 7.2e-14 52.3 0.2 2.5 1 1 0 1 1 1 1 Domain of unknown function (DUF1998) Helicase_C PF00271.31 gi|336254496|ref|YP_004597603.1| - 7.9e-11 42.3 0.0 4.1e-10 40.0 0.0 2.1 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|336254496|ref|YP_004597603.1| - 7.5e-09 35.8 0.0 1.1e-08 35.2 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Methyltransf_24 PF13578.6 gi|336254496|ref|YP_004597603.1| - 0.1 13.6 3.8 0.16 13.0 0.1 3.1 3 1 0 3 3 3 0 Methyltransferase domain TPR_10 PF13374.6 gi|336254496|ref|YP_004597603.1| - 0.16 11.8 0.8 0.57 10.1 0.8 2.0 1 0 0 1 1 1 0 Tetratricopeptide repeat DUF2304 PF10066.9 gi|336254497|ref|YP_004597604.1| - 0.036 14.3 1.7 0.047 13.9 1.7 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2304) EutH PF04346.12 gi|336254498|ref|YP_004597605.1| - 0.022 13.9 1.3 0.032 13.4 1.3 1.2 1 0 0 1 1 1 0 Ethanolamine utilisation protein, EutH Peptidase_U4 PF03419.13 gi|336254498|ref|YP_004597605.1| - 0.28 10.4 4.3 0.33 10.2 4.3 1.2 1 0 0 1 1 1 0 Sporulation factor SpoIIGA TraQ PF09679.10 gi|336254498|ref|YP_004597605.1| - 0.53 10.2 0.0 0.53 10.2 0.0 2.6 2 1 1 3 3 3 0 Type-F conjugative transfer system pilin chaperone (TraQ) DUF2238 PF09997.9 gi|336254499|ref|YP_004597606.1| - 0.024 14.4 4.6 0.26 11.1 4.6 2.1 1 1 0 1 1 1 0 Predicted membrane protein (DUF2238) DUF4233 PF14017.6 gi|336254499|ref|YP_004597606.1| - 0.098 13.0 17.7 0.052 13.9 4.8 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF4233) MitoNEET_N PF10660.9 gi|336254499|ref|YP_004597606.1| - 0.43 10.6 2.4 0.45 10.6 0.1 2.3 2 1 0 2 2 2 0 Iron-containing outer mitochondrial membrane protein N-terminus DUF983 PF06170.12 gi|336254499|ref|YP_004597606.1| - 1.8 9.0 6.1 18 5.8 0.4 2.8 2 1 0 2 2 2 0 Protein of unknown function (DUF983) TAT_signal PF10518.9 gi|336254500|ref|YP_004597607.1| - 0.0032 17.2 8.2 0.0056 16.5 8.2 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.9 gi|336254500|ref|YP_004597607.1| - 0.0055 16.0 1.3 0.011 15.0 1.3 1.5 1 0 0 1 1 1 1 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal GARS_A PF01071.19 gi|336254501|ref|YP_004597608.1| - 8.7e-54 182.3 0.2 1.6e-53 181.4 0.0 1.5 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.15 gi|336254501|ref|YP_004597608.1| - 6.5e-22 78.1 0.1 1.3e-21 77.1 0.1 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.16 gi|336254501|ref|YP_004597608.1| - 2.5e-13 50.1 0.1 5.9e-13 48.9 0.1 1.7 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp_3 PF02655.14 gi|336254501|ref|YP_004597608.1| - 2.2e-05 24.5 0.0 4.1e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|336254501|ref|YP_004597608.1| - 0.01 15.1 0.0 0.03 13.6 0.0 1.7 2 0 0 2 2 2 0 Sugar-transfer associated ATP-grasp CPSase_L_D2 PF02786.17 gi|336254501|ref|YP_004597608.1| - 0.011 15.3 0.0 0.02 14.4 0.0 1.4 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_4 PF13535.6 gi|336254501|ref|YP_004597608.1| - 0.55 9.8 2.1 0.63 9.6 0.1 2.2 3 0 0 3 3 3 0 ATP-grasp domain DUF2939 PF11159.8 gi|336254502|ref|YP_004597609.1| - 0.036 14.5 1.2 0.34 11.3 0.5 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2939) Aminotran_3 PF00202.21 gi|336254503|ref|YP_004597610.1| - 1.4e-72 244.6 0.0 1.9e-71 240.8 0.0 1.9 1 1 0 1 1 1 1 Aminotransferase class-III DUF4010 PF13194.6 gi|336254504|ref|YP_004597611.1| - 4.5e-50 170.3 32.6 4.5e-50 170.3 32.6 2.4 2 1 0 2 2 2 1 Domain of unknown function (DUF4010) MgtC PF02308.16 gi|336254504|ref|YP_004597611.1| - 3.8e-24 85.4 12.7 3.8e-24 85.4 12.7 3.8 2 1 1 3 3 3 1 MgtC family zf-NADH-PPase PF09297.11 gi|336254505|ref|YP_004597612.1| - 0.0013 18.3 0.3 0.91 9.2 0.2 2.3 2 0 0 2 2 2 2 NADH pyrophosphatase zinc ribbon domain UPF0547 PF10571.9 gi|336254505|ref|YP_004597612.1| - 0.017 15.2 0.3 0.041 14.0 0.3 1.6 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 DZR PF12773.7 gi|336254505|ref|YP_004597612.1| - 0.023 14.7 0.2 0.04 13.9 0.2 1.4 1 1 0 1 1 1 0 Double zinc ribbon zinc_ribbon_15 PF17032.5 gi|336254505|ref|YP_004597612.1| - 0.05 14.3 0.8 0.05 14.3 0.8 1.8 1 1 1 2 2 2 0 zinc-ribbon family S_4TM PF18159.1 gi|336254505|ref|YP_004597612.1| - 0.06 12.6 0.3 0.069 12.4 0.3 1.0 1 0 0 1 1 1 0 SMODS-associating 4TM effector domain A2L_zn_ribbon PF08792.10 gi|336254505|ref|YP_004597612.1| - 0.11 12.2 1.7 0.94 9.3 0.2 2.1 1 1 1 2 2 2 0 A2L zinc ribbon domain PadR PF03551.14 gi|336254506|ref|YP_004597613.1| - 1.4e-18 66.6 1.9 1.7e-18 66.4 1.9 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family DUF1495 PF07381.11 gi|336254506|ref|YP_004597613.1| - 0.0044 16.8 0.0 0.0065 16.3 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) HTH_45 PF14947.6 gi|336254506|ref|YP_004597613.1| - 0.0072 16.3 0.0 0.011 15.8 0.0 1.4 1 1 0 1 1 1 1 Winged helix-turn-helix HTH_27 PF13463.6 gi|336254506|ref|YP_004597613.1| - 0.0084 16.6 0.2 0.011 16.3 0.2 1.3 1 1 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|336254506|ref|YP_004597613.1| - 0.02 14.8 0.5 2.1 8.3 0.1 2.6 3 0 0 3 3 3 0 MarR family DUF4364 PF14277.6 gi|336254506|ref|YP_004597613.1| - 0.1 12.4 0.0 0.17 11.6 0.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4364) DUF2172 PF09940.9 gi|336254507|ref|YP_004597614.1| - 0.012 16.0 0.1 0.013 15.9 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF2172) NMT PF01233.19 gi|336254507|ref|YP_004597614.1| - 0.1 12.4 0.3 0.11 12.4 0.3 1.0 1 0 0 1 1 1 0 Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain CarboxypepD_reg PF13620.6 gi|336254508|ref|YP_004597615.1| - 2.3e-10 40.6 1.5 4.3e-05 23.7 0.1 2.6 2 0 0 2 2 2 2 Carboxypeptidase regulatory-like domain Big_1 PF02369.16 gi|336254508|ref|YP_004597615.1| - 8.8e-07 28.8 2.5 2.4e-05 24.2 0.6 3.0 2 0 0 2 2 2 1 Bacterial Ig-like domain (group 1) CarbopepD_reg_2 PF13715.6 gi|336254508|ref|YP_004597615.1| - 3.2e-06 27.0 0.6 0.057 13.4 0.1 2.8 2 1 0 2 2 2 2 CarboxypepD_reg-like domain Invasin_D3 PF09134.10 gi|336254508|ref|YP_004597615.1| - 0.00017 21.8 8.8 0.00038 20.7 1.4 2.7 1 1 1 2 2 2 1 Invasin, domain 3 DUF824 PF05688.11 gi|336254508|ref|YP_004597615.1| - 0.0046 16.7 0.1 0.0092 15.8 0.1 1.5 1 0 0 1 1 1 1 Salmonella repeat of unknown function (DUF824) MG4 PF17789.1 gi|336254508|ref|YP_004597615.1| - 0.0077 16.4 0.3 0.037 14.2 0.1 2.2 2 0 0 2 2 2 1 Macroglobulin domain MG4 Y_Y_Y PF07495.13 gi|336254508|ref|YP_004597615.1| - 0.013 15.4 0.0 0.12 12.3 0.0 2.4 2 0 0 2 2 2 0 Y_Y_Y domain DUF2606 PF10794.9 gi|336254508|ref|YP_004597615.1| - 0.022 14.5 2.5 1 9.1 0.9 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2606) Dioxygenase_C PF00775.21 gi|336254508|ref|YP_004597615.1| - 0.15 11.5 2.9 0.18 11.3 1.5 1.7 2 0 0 2 2 2 0 Dioxygenase UPF0560 PF10577.9 gi|336254508|ref|YP_004597615.1| - 2.1 6.8 15.2 3 6.3 15.2 1.2 1 0 0 1 1 1 0 Uncharacterised protein family UPF0560 HypA PF01155.19 gi|336254509|ref|YP_004597616.1| - 0.0024 17.9 0.2 0.012 15.6 0.2 2.1 2 0 0 2 2 2 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TF_Zn_Ribbon PF08271.12 gi|336254509|ref|YP_004597616.1| - 0.018 14.6 1.5 0.046 13.2 1.5 1.7 1 0 0 1 1 1 0 TFIIB zinc-binding DZR PF12773.7 gi|336254509|ref|YP_004597616.1| - 0.019 15.0 0.2 0.034 14.2 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon DUF2072 PF09845.9 gi|336254509|ref|YP_004597616.1| - 0.09 13.0 0.1 0.19 12.0 0.1 1.5 1 0 0 1 1 1 0 Zn-ribbon containing protein DUF1451 PF07295.11 gi|336254509|ref|YP_004597616.1| - 0.091 12.8 0.4 0.3 11.1 0.4 1.9 1 0 0 1 1 1 0 Zinc-ribbon containing domain zf-IS66 PF13005.7 gi|336254509|ref|YP_004597616.1| - 0.16 12.4 1.8 3.4 8.2 0.1 2.7 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Zn_Tnp_IS91 PF14319.6 gi|336254509|ref|YP_004597616.1| - 0.17 12.0 0.2 0.35 10.9 0.2 1.5 1 0 0 1 1 1 0 Transposase zinc-binding domain Zn-ribbon_8 PF09723.10 gi|336254509|ref|YP_004597616.1| - 0.25 11.5 1.5 0.69 10.1 1.5 1.7 1 1 0 1 1 1 0 Zinc ribbon domain UPF0547 PF10571.9 gi|336254509|ref|YP_004597616.1| - 1.9 8.6 4.7 1.3 9.2 0.4 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Zn_Tnp_IS1595 PF12760.7 gi|336254509|ref|YP_004597616.1| - 1.9 8.5 5.6 8.3 6.5 0.1 2.7 2 1 1 3 3 3 0 Transposase zinc-ribbon domain THF_DHG_CYH_C PF02882.19 gi|336254510|ref|YP_004597617.1| - 1.8e-67 225.7 1.1 2.4e-67 225.2 1.1 1.2 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain THF_DHG_CYH PF00763.23 gi|336254510|ref|YP_004597617.1| - 2.3e-36 124.6 0.0 3.5e-36 124.0 0.0 1.3 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AlaDh_PNT_C PF01262.21 gi|336254510|ref|YP_004597617.1| - 0.027 13.8 0.6 0.042 13.1 0.6 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Osteopontin PF00865.18 gi|336254511|ref|YP_004597618.1| - 0.47 9.9 3.8 0.71 9.3 3.8 1.2 1 0 0 1 1 1 0 Osteopontin Methyltransf_25 PF13649.6 gi|336254512|ref|YP_004597619.1| - 0.0015 19.2 0.1 0.0026 18.4 0.1 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|336254512|ref|YP_004597619.1| - 0.023 14.5 0.0 0.031 14.1 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_11 PF08241.12 gi|336254512|ref|YP_004597619.1| - 0.037 14.7 0.0 0.062 14.0 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain SHMT PF00464.19 gi|336254513|ref|YP_004597620.1| - 1.1e-155 518.2 0.0 1.3e-155 518.0 0.0 1.0 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Beta_elim_lyase PF01212.21 gi|336254513|ref|YP_004597620.1| - 8.1e-09 35.2 0.1 0.0021 17.4 0.1 2.1 2 0 0 2 2 2 2 Beta-eliminating lyase Aminotran_1_2 PF00155.21 gi|336254513|ref|YP_004597620.1| - 3.4e-08 33.1 0.0 1.2e-07 31.3 0.0 1.7 1 1 1 2 2 2 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|336254513|ref|YP_004597620.1| - 0.021 14.2 0.1 0.028 13.7 0.1 1.2 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family RNase_P_p30 PF01876.16 gi|336254516|ref|YP_004597623.1| - 4e-35 121.2 0.0 4.9e-35 120.9 0.0 1.0 1 0 0 1 1 1 1 RNase P subunit p30 Methyltransf_25 PF13649.6 gi|336254517|ref|YP_004597624.1| - 1.2e-17 64.3 0.0 2.5e-17 63.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|336254517|ref|YP_004597624.1| - 1.2e-13 51.5 0.1 7e-13 49.0 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|336254517|ref|YP_004597624.1| - 1.8e-13 50.6 0.0 2.7e-13 50.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|336254517|ref|YP_004597624.1| - 1.5e-10 41.7 0.0 2.6e-10 40.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|336254517|ref|YP_004597624.1| - 2.1e-10 40.4 0.0 3.6e-10 39.6 0.0 1.4 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|336254517|ref|YP_004597624.1| - 1.4e-07 31.5 0.0 6e-07 29.4 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.14 gi|336254517|ref|YP_004597624.1| - 2.8e-06 27.0 0.0 3.8e-06 26.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|336254517|ref|YP_004597624.1| - 0.0066 15.9 0.0 0.0092 15.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) RrnaAD PF00398.20 gi|336254517|ref|YP_004597624.1| - 0.0086 15.2 0.0 0.01 14.9 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_18 PF12847.7 gi|336254517|ref|YP_004597624.1| - 0.0093 15.9 0.0 0.013 15.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain DREV PF05219.12 gi|336254517|ref|YP_004597624.1| - 0.0098 15.0 0.0 0.014 14.5 0.0 1.2 1 0 0 1 1 1 1 DREV methyltransferase Methyltransf_32 PF13679.6 gi|336254517|ref|YP_004597624.1| - 0.013 15.5 0.0 0.018 15.0 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain CMAS PF02353.20 gi|336254517|ref|YP_004597624.1| - 0.023 14.0 0.0 0.031 13.6 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase PCMT PF01135.19 gi|336254517|ref|YP_004597624.1| - 0.065 13.0 0.0 0.089 12.5 0.0 1.1 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) tRNA_U5-meth_tr PF05958.11 gi|336254517|ref|YP_004597624.1| - 0.086 11.8 0.0 0.2 10.6 0.0 1.4 1 1 1 2 2 2 0 tRNA (Uracil-5-)-methyltransferase Methyltransf_4 PF02390.17 gi|336254517|ref|YP_004597624.1| - 0.16 11.4 0.0 0.25 10.8 0.0 1.3 1 0 0 1 1 1 0 Putative methyltransferase RNase_P_Rpp14 PF01900.19 gi|336254518|ref|YP_004597625.1| - 7.3e-19 67.9 0.0 9.8e-19 67.5 0.0 1.2 1 0 0 1 1 1 1 Rpp14/Pop5 family Proteasome PF00227.26 gi|336254519|ref|YP_004597626.1| - 9.5e-56 188.3 0.0 1.2e-55 188.0 0.0 1.1 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.9 gi|336254519|ref|YP_004597626.1| - 8.9e-14 50.9 0.1 1.5e-13 50.1 0.1 1.4 1 0 0 1 1 1 1 Proteasome subunit A N-terminal signature SBDS PF01172.18 gi|336254520|ref|YP_004597627.1| - 1.7e-20 72.9 0.0 2.8e-20 72.2 0.0 1.4 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.10 gi|336254520|ref|YP_004597627.1| - 1.2e-18 67.2 0.0 3.3e-18 65.8 0.0 1.7 2 0 0 2 2 2 1 SBDS protein C-terminal domain RCDG1 PF15725.5 gi|336254520|ref|YP_004597627.1| - 0.042 14.3 0.1 0.11 12.9 0.1 1.8 1 0 0 1 1 1 0 Renal cancer differentiation gene 1 protein YbjN PF10722.9 gi|336254520|ref|YP_004597627.1| - 0.049 13.7 0.2 0.82 9.7 0.0 2.2 2 0 0 2 2 2 0 Putative bacterial sensory transduction regulator FUN14 PF04930.15 gi|336254521|ref|YP_004597628.1| - 2.6e-16 59.8 5.7 3.6e-16 59.4 5.7 1.2 1 0 0 1 1 1 1 FUN14 family GTP-bdg_N PF13167.6 gi|336254522|ref|YP_004597629.1| - 6.3e-23 81.3 0.0 1.6e-22 80.0 0.0 1.7 1 0 0 1 1 1 1 GTP-binding GTPase N-terminal MMR_HSR1 PF01926.23 gi|336254522|ref|YP_004597629.1| - 2.3e-18 66.3 0.0 5.2e-18 65.2 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP-bdg_M PF16360.5 gi|336254522|ref|YP_004597629.1| - 1.7e-16 60.6 7.9 3.5e-16 59.6 7.9 1.6 1 0 0 1 1 1 1 GTP-binding GTPase Middle Region GTP_EFTU PF00009.27 gi|336254522|ref|YP_004597629.1| - 1e-10 41.5 0.2 3.2e-10 39.9 0.2 1.8 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain RsgA_GTPase PF03193.16 gi|336254522|ref|YP_004597629.1| - 2e-08 34.3 0.1 0.0011 18.9 0.1 2.4 2 0 0 2 2 2 2 RsgA GTPase MMR_HSR1_Xtn PF16897.5 gi|336254522|ref|YP_004597629.1| - 4.9e-06 26.5 0.1 9.8e-06 25.5 0.1 1.5 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain cobW PF02492.19 gi|336254522|ref|YP_004597629.1| - 9.9e-06 25.3 0.4 0.0019 17.8 0.1 2.4 1 1 1 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain FeoB_N PF02421.18 gi|336254522|ref|YP_004597629.1| - 0.00013 21.5 0.2 0.099 12.2 0.1 2.6 3 0 0 3 3 3 2 Ferrous iron transport protein B Arf PF00025.21 gi|336254522|ref|YP_004597629.1| - 0.0033 16.9 0.2 1.1 8.6 0.1 2.5 2 0 0 2 2 2 2 ADP-ribosylation factor family MnmE_helical PF12631.7 gi|336254522|ref|YP_004597629.1| - 0.0082 16.3 0.1 0.014 15.6 0.1 1.3 1 0 0 1 1 1 1 MnmE helical domain DUF2046 PF09755.9 gi|336254522|ref|YP_004597629.1| - 0.0097 15.2 1.2 0.06 12.6 0.0 2.1 2 0 0 2 2 2 1 Uncharacterized conserved protein H4 (DUF2046) AAA_16 PF13191.6 gi|336254522|ref|YP_004597629.1| - 0.017 15.5 3.0 0.018 15.4 0.7 2.2 1 1 1 2 2 2 0 AAA ATPase domain Roc PF08477.13 gi|336254522|ref|YP_004597629.1| - 0.034 14.4 0.1 10 6.4 0.0 2.4 2 0 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase AAA_14 PF13173.6 gi|336254522|ref|YP_004597629.1| - 0.04 14.0 0.0 0.12 12.4 0.0 1.8 2 0 0 2 2 1 0 AAA domain AAA_18 PF13238.6 gi|336254522|ref|YP_004597629.1| - 0.046 14.3 0.0 0.38 11.3 0.0 2.5 1 1 1 2 2 2 0 AAA domain DUF2408 PF10303.9 gi|336254522|ref|YP_004597629.1| - 0.048 14.2 0.8 4.3 7.9 0.2 3.1 2 1 0 2 2 2 0 Protein of unknown function (DUF2408) ABC_tran PF00005.27 gi|336254522|ref|YP_004597629.1| - 0.05 14.1 0.0 0.13 12.7 0.0 1.9 2 0 0 2 2 2 0 ABC transporter NOG1 PF06858.14 gi|336254522|ref|YP_004597629.1| - 0.05 13.4 0.2 0.16 11.8 0.2 1.9 1 0 0 1 1 1 0 Nucleolar GTP-binding protein 1 (NOG1) AAA_25 PF13481.6 gi|336254522|ref|YP_004597629.1| - 0.054 13.1 1.1 1.5 8.4 0.3 3.0 2 1 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|336254522|ref|YP_004597629.1| - 0.11 13.0 1.8 17 5.8 0.0 2.3 2 0 0 2 2 2 0 AAA domain Thiolase_N PF00108.23 gi|336254523|ref|YP_004597630.1| - 2.5e-56 190.9 0.0 3.3e-56 190.5 0.0 1.1 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|336254523|ref|YP_004597630.1| - 1.2e-07 31.4 0.1 4.2e-07 29.7 0.1 1.8 2 0 0 2 2 2 1 Thiolase, C-terminal domain Ketoacyl-synt_C PF02801.22 gi|336254523|ref|YP_004597630.1| - 0.0072 16.3 0.1 13 5.8 0.0 3.3 3 0 0 3 3 3 2 Beta-ketoacyl synthase, C-terminal domain ketoacyl-synt PF00109.26 gi|336254523|ref|YP_004597630.1| - 0.17 11.4 4.1 0.58 9.7 0.8 2.4 1 1 2 3 3 3 0 Beta-ketoacyl synthase, N-terminal domain OB_aCoA_assoc PF01796.17 gi|336254524|ref|YP_004597631.1| - 5.3e-06 26.3 0.9 7.7e-06 25.8 0.9 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF3268 PF11672.8 gi|336254525|ref|YP_004597632.1| - 0.03 14.6 0.0 0.046 14.1 0.0 1.3 1 0 0 1 1 1 0 zinc-finger-containing domain APG17 PF04108.12 gi|336254526|ref|YP_004597633.1| - 0.0047 16.1 0.1 0.029 13.5 0.0 1.9 1 1 1 2 2 2 2 Autophagy protein Apg17 COMP PF11598.8 gi|336254526|ref|YP_004597633.1| - 0.78 10.3 2.8 1.8 9.1 0.9 2.3 2 0 0 2 2 2 0 Cartilage oligomeric matrix protein Cnn_1N PF07989.11 gi|336254526|ref|YP_004597633.1| - 0.89 9.8 6.9 8 6.7 0.4 3.3 3 1 0 3 3 3 0 Centrosomin N-terminal motif 1 DUF4148 PF13663.6 gi|336254526|ref|YP_004597633.1| - 8.2 6.7 7.2 7.7 6.8 0.4 3.3 4 0 0 4 4 4 0 Domain of unknown function (DUF4148) RNase_H_2 PF13482.6 gi|336254528|ref|YP_004597635.1| - 2e-34 119.0 0.0 2.5e-34 118.6 0.0 1.1 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_A_exo1 PF01612.20 gi|336254528|ref|YP_004597635.1| - 0.017 14.8 0.0 0.022 14.5 0.0 1.3 1 1 0 1 1 1 0 3'-5' exonuclease 4HBT_2 PF13279.6 gi|336254529|ref|YP_004597636.1| - 2e-16 60.6 0.0 2.5e-16 60.3 0.0 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily 4HBT PF03061.22 gi|336254529|ref|YP_004597636.1| - 9.8e-14 51.5 0.1 1.3e-13 51.1 0.1 1.2 1 0 0 1 1 1 1 Thioesterase superfamily Acyl-ACP_TE PF01643.17 gi|336254529|ref|YP_004597636.1| - 2.2e-09 37.0 0.0 4.3e-09 36.0 0.0 1.5 1 1 0 1 1 1 1 Acyl-ACP thioesterase 3-alpha PF03475.14 gi|336254529|ref|YP_004597636.1| - 0.072 13.0 1.4 0.22 11.4 0.1 2.1 2 0 0 2 2 2 0 3-alpha domain HalOD1 PF18545.1 gi|336254530|ref|YP_004597637.1| - 1.1e-30 105.7 1.5 1.3e-30 105.5 1.5 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 baeRF_family5 PF18846.1 gi|336254531|ref|YP_004597638.1| - 0.17 12.1 0.0 0.31 11.2 0.0 1.3 1 0 0 1 1 1 0 Bacterial archaeo-eukaryotic release factor family 5 Acetyltransf_1 PF00583.25 gi|336254533|ref|YP_004597640.1| - 1.5e-20 73.6 0.1 1.9e-20 73.2 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|336254533|ref|YP_004597640.1| - 9.5e-14 51.4 0.0 1.5e-13 50.8 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|336254533|ref|YP_004597640.1| - 2.8e-12 46.9 0.0 3.6e-12 46.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|336254533|ref|YP_004597640.1| - 1.1e-09 38.1 0.0 1.8e-09 37.4 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.7 gi|336254533|ref|YP_004597640.1| - 1.3e-08 35.6 0.1 1.6e-08 35.4 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|336254533|ref|YP_004597640.1| - 2.1e-07 31.1 0.1 4.1e-07 30.1 0.1 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|336254533|ref|YP_004597640.1| - 4.6e-06 26.7 0.0 1e-05 25.5 0.0 1.6 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_8 PF13523.6 gi|336254533|ref|YP_004597640.1| - 4.8e-05 23.1 0.2 6.4e-05 22.7 0.2 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_13 PF13880.6 gi|336254533|ref|YP_004597640.1| - 0.0018 18.2 0.0 0.0038 17.2 0.0 1.5 1 0 0 1 1 1 1 ESCO1/2 acetyl-transferase PanZ PF12568.8 gi|336254533|ref|YP_004597640.1| - 0.0024 17.6 0.1 0.0054 16.4 0.0 1.6 1 1 1 2 2 2 1 Acetyltransferase (GNAT) domain, PanZ Acetyltransf_4 PF13420.7 gi|336254533|ref|YP_004597640.1| - 0.027 14.6 0.0 0.029 14.5 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain ZNRF_3_ecto PF18212.1 gi|336254533|ref|YP_004597640.1| - 0.048 13.7 0.0 0.081 12.9 0.0 1.4 1 0 0 1 1 1 0 ZNRF-3 Ectodomain Acetyltransf_15 PF17013.5 gi|336254533|ref|YP_004597640.1| - 0.15 11.5 0.0 0.46 9.9 0.0 1.8 1 1 0 1 1 1 0 Putative acetyl-transferase Acetyltransf_6 PF13480.7 gi|336254533|ref|YP_004597640.1| - 0.16 12.1 9.0 0.037 14.2 4.3 2.0 1 1 1 2 2 2 0 Acetyltransferase (GNAT) domain CBS PF00571.28 gi|336254534|ref|YP_004597641.1| - 1.8e-22 79.5 7.2 3.2e-14 53.1 1.2 2.2 2 0 0 2 2 2 2 CBS domain zf-RRN7 PF11781.8 gi|336254534|ref|YP_004597641.1| - 0.012 15.3 0.8 0.019 14.6 0.8 1.4 1 0 0 1 1 1 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 OrfB_Zn_ribbon PF07282.11 gi|336254534|ref|YP_004597641.1| - 0.036 14.0 1.3 0.062 13.2 0.3 1.9 2 0 0 2 2 2 0 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.10 gi|336254534|ref|YP_004597641.1| - 0.062 13.4 1.0 0.12 12.5 1.0 1.4 1 0 0 1 1 1 0 Zinc ribbon domain Thi4 PF01946.17 gi|336254534|ref|YP_004597641.1| - 0.089 12.0 0.2 0.21 10.8 0.1 1.5 1 1 0 1 1 1 0 Thi4 family Desulfoferrod_N PF06397.12 gi|336254534|ref|YP_004597641.1| - 0.12 12.1 1.0 0.22 11.2 1.0 1.3 1 0 0 1 1 1 0 Desulfoferrodoxin, N-terminal domain TF_Zn_Ribbon PF08271.12 gi|336254534|ref|YP_004597641.1| - 0.46 10.0 7.2 1.6 8.3 3.6 3.0 2 1 1 3 3 3 0 TFIIB zinc-binding PhnA_Zn_Ribbon PF08274.12 gi|336254534|ref|YP_004597641.1| - 0.47 10.4 2.8 1.3 9.0 2.8 1.7 1 1 0 1 1 1 0 PhnA Zinc-Ribbon GCH_III PF05165.12 gi|336254535|ref|YP_004597642.1| - 3e-94 314.9 0.2 3.8e-94 314.6 0.2 1.0 1 0 0 1 1 1 1 GTP cyclohydrolase III GGDEF_2 PF17853.1 gi|336254535|ref|YP_004597642.1| - 1.2e-10 41.7 0.1 2.7e-05 24.4 0.0 2.1 2 0 0 2 2 2 2 GGDEF-like domain mCpol PF18182.1 gi|336254535|ref|YP_004597642.1| - 0.002 18.5 0.0 0.036 14.4 0.0 2.1 2 0 0 2 2 2 1 minimal CRISPR polymerase domain HOCHOB PF17943.1 gi|336254536|ref|YP_004597643.1| - 0.071 13.8 0.0 0.092 13.5 0.0 1.1 1 0 0 1 1 1 0 Homeobox-cysteine loop-homeobox RNA_pol_Rpb2_5 PF04567.17 gi|336254536|ref|YP_004597643.1| - 0.11 13.0 0.7 0.11 13.0 0.7 1.9 2 0 0 2 2 2 0 RNA polymerase Rpb2, domain 5 G_glu_transpept PF01019.21 gi|336254537|ref|YP_004597644.1| - 7.7e-141 470.3 0.0 9.1e-141 470.1 0.0 1.1 1 0 0 1 1 1 1 Gamma-glutamyltranspeptidase UCR_Fe-S_N PF10399.9 gi|336254537|ref|YP_004597644.1| - 0.072 12.5 2.4 0.18 11.2 2.4 1.7 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal CoA_transf_3 PF02515.17 gi|336254539|ref|YP_004597646.1| - 3.4e-125 418.0 0.0 3.8e-125 417.8 0.0 1.0 1 0 0 1 1 1 1 CoA-transferase family III DUF3850 PF12961.7 gi|336254539|ref|YP_004597646.1| - 0.081 13.0 0.7 0.19 11.8 0.1 1.9 3 0 0 3 3 3 0 Domain of unknown function (DUF3850) MPTase-PolyVal PF18818.1 gi|336254539|ref|YP_004597646.1| - 0.18 11.9 0.1 0.3 11.1 0.1 1.3 1 0 0 1 1 1 0 Metallopeptidase superfamily domain B12-binding PF02310.19 gi|336254540|ref|YP_004597647.1| - 2.4e-17 63.1 1.4 3e-17 62.8 1.4 1.1 1 0 0 1 1 1 1 B12 binding domain ADH_zinc_N PF00107.26 gi|336254540|ref|YP_004597647.1| - 0.011 15.6 0.2 0.25 11.3 0.0 2.1 1 1 1 2 2 2 0 Zinc-binding dehydrogenase Met_asp_mut_E PF06368.11 gi|336254541|ref|YP_004597648.1| - 1.5e-206 686.1 0.0 1.7e-206 685.9 0.0 1.0 1 0 0 1 1 1 1 Methylaspartate mutase E chain (MutE) MAAL_C PF07476.11 gi|336254542|ref|YP_004597649.1| - 1.2e-114 381.7 0.0 1.7e-114 381.1 0.0 1.2 1 0 0 1 1 1 1 Methylaspartate ammonia-lyase C-terminus MAAL_N PF05034.13 gi|336254542|ref|YP_004597649.1| - 4.6e-69 231.1 0.4 8.1e-69 230.3 0.4 1.4 1 0 0 1 1 1 1 Methylaspartate ammonia-lyase N-terminus MR_MLE_C PF13378.6 gi|336254542|ref|YP_004597649.1| - 4.6e-13 49.2 0.1 7.9e-13 48.5 0.1 1.4 1 0 0 1 1 1 1 Enolase C-terminal domain-like ASL_C2 PF14698.6 gi|336254542|ref|YP_004597649.1| - 0.026 15.3 0.6 0.4 11.5 0.3 2.8 2 0 0 2 2 2 0 Argininosuccinate lyase C-terminal DUF2514 PF10721.9 gi|336254542|ref|YP_004597649.1| - 4.7 7.2 9.1 1.5 8.9 1.8 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF2514) MaoC_dehydratas PF01575.19 gi|336254543|ref|YP_004597650.1| - 5e-08 32.5 0.0 5.3e-05 22.8 0.0 2.3 2 0 0 2 2 2 2 MaoC like domain MaoC_dehydrat_N PF13452.6 gi|336254543|ref|YP_004597650.1| - 4.5e-06 26.8 0.0 0.022 14.9 0.0 2.5 2 0 0 2 2 2 2 N-terminal half of MaoC dehydratase HpcH_HpaI PF03328.14 gi|336254544|ref|YP_004597651.1| - 3.6e-15 55.7 0.0 1.4e-14 53.8 0.0 2.0 1 1 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family Malate_synthase PF01274.22 gi|336254544|ref|YP_004597651.1| - 0.058 11.6 0.0 0.63 8.2 0.0 2.1 2 1 1 3 3 3 0 Malate synthase OsmC PF02566.19 gi|336254545|ref|YP_004597652.1| - 1.7e-17 63.7 0.0 3.8e-17 62.6 0.0 1.5 2 0 0 2 2 2 1 OsmC-like protein CARM1 PF11531.8 gi|336254545|ref|YP_004597652.1| - 0.1 12.8 0.1 0.21 11.8 0.1 1.5 1 0 0 1 1 1 0 Coactivator-associated arginine methyltransferase 1 N terminal DUF21 PF01595.20 gi|336254546|ref|YP_004597653.1| - 6e-47 159.6 1.5 7.8e-47 159.2 1.5 1.1 1 0 0 1 1 1 1 Cyclin M transmembrane N-terminal domain CorC_HlyC PF03471.17 gi|336254546|ref|YP_004597653.1| - 4.3e-21 74.7 1.1 1.5e-20 73.0 1.1 2.0 1 0 0 1 1 1 1 Transporter associated domain CBS PF00571.28 gi|336254546|ref|YP_004597653.1| - 3.6e-16 59.3 5.4 1.1e-08 35.3 1.0 2.7 2 0 0 2 2 2 2 CBS domain DUF2064 PF09837.9 gi|336254547|ref|YP_004597654.1| - 0.00013 21.8 0.0 0.00028 20.7 0.0 1.4 1 1 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2064) Abhydrolase_6 PF12697.7 gi|336254549|ref|YP_004597656.1| - 3.2e-23 83.5 7.2 3.7e-23 83.3 7.2 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|336254549|ref|YP_004597656.1| - 3.4e-23 82.6 0.0 1.4e-20 74.1 0.0 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|336254549|ref|YP_004597656.1| - 4.6e-19 68.6 0.1 7.6e-19 67.9 0.1 1.4 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Ser_hydrolase PF06821.13 gi|336254549|ref|YP_004597656.1| - 0.031 14.1 0.1 0.07 13.0 0.0 1.6 2 0 0 2 2 2 0 Serine hydrolase Abhydro_lipase PF04083.16 gi|336254549|ref|YP_004597656.1| - 0.079 12.5 0.0 0.2 11.2 0.0 1.7 1 0 0 1 1 1 0 Partial alpha/beta-hydrolase lipase region Thioesterase PF00975.20 gi|336254549|ref|YP_004597656.1| - 0.11 12.7 0.0 0.16 12.1 0.0 1.4 1 0 0 1 1 1 0 Thioesterase domain Peptidase_S9 PF00326.21 gi|336254549|ref|YP_004597656.1| - 0.14 11.6 0.0 0.6 9.5 0.0 2.0 1 1 1 2 2 2 0 Prolyl oligopeptidase family Esterase PF00756.20 gi|336254549|ref|YP_004597656.1| - 0.15 11.7 0.2 0.39 10.3 0.1 1.7 1 1 0 1 1 1 0 Putative esterase UDG PF03167.19 gi|336254550|ref|YP_004597657.1| - 2.7e-18 66.4 0.0 3.6e-18 66.0 0.0 1.2 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily ParA PF10609.9 gi|336254552|ref|YP_004597659.1| - 1.3e-100 335.9 0.0 1.6e-100 335.7 0.0 1.1 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase FeS_assembly_P PF01883.19 gi|336254552|ref|YP_004597659.1| - 1.1e-15 57.5 1.5 2.1e-15 56.7 0.8 1.9 2 0 0 2 2 2 1 Iron-sulfur cluster assembly protein CbiA PF01656.23 gi|336254552|ref|YP_004597659.1| - 6.2e-15 55.4 0.0 4.7e-14 52.5 0.0 2.1 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|336254552|ref|YP_004597659.1| - 2.4e-10 40.6 0.2 9.3e-09 35.4 0.1 2.1 2 0 0 2 2 2 1 AAA domain MipZ PF09140.11 gi|336254552|ref|YP_004597659.1| - 6e-08 32.3 0.0 8.2e-08 31.9 0.0 1.2 1 0 0 1 1 1 1 ATPase MipZ Fer4_NifH PF00142.18 gi|336254552|ref|YP_004597659.1| - 3.1e-06 26.8 0.0 0.01 15.3 0.1 2.2 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family VirC1 PF07015.11 gi|336254552|ref|YP_004597659.1| - 0.00015 21.2 0.0 0.00025 20.4 0.0 1.3 1 0 0 1 1 1 1 VirC1 protein ArsA_ATPase PF02374.15 gi|336254552|ref|YP_004597659.1| - 0.00023 20.4 3.6 0.00058 19.1 1.0 2.1 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_25 PF13481.6 gi|336254552|ref|YP_004597659.1| - 0.0058 16.2 0.0 0.013 15.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain DUF1610 PF07754.11 gi|336254552|ref|YP_004597659.1| - 0.017 15.1 0.1 0.063 13.2 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) CBP_BcsQ PF06564.12 gi|336254552|ref|YP_004597659.1| - 0.041 13.4 0.8 0.26 10.7 0.3 2.0 2 0 0 2 2 2 0 Cellulose biosynthesis protein BcsQ AAA_26 PF13500.6 gi|336254552|ref|YP_004597659.1| - 0.05 13.4 0.0 4 7.2 0.1 2.4 2 0 0 2 2 2 0 AAA domain CLP1_P PF16575.5 gi|336254552|ref|YP_004597659.1| - 0.11 12.2 0.0 0.22 11.3 0.0 1.4 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop APS_kinase PF01583.20 gi|336254552|ref|YP_004597659.1| - 0.15 11.9 0.0 0.41 10.5 0.0 1.7 2 0 0 2 2 2 0 Adenylylsulphate kinase zf-Mss51 PF13824.6 gi|336254553|ref|YP_004597660.1| - 0.044 13.9 0.0 0.42 10.7 0.1 2.1 2 0 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-ribbon_3 PF13248.6 gi|336254553|ref|YP_004597660.1| - 0.045 13.2 0.1 0.12 11.8 0.1 1.7 1 0 0 1 1 1 0 zinc-ribbon domain Nudix_N_2 PF14803.6 gi|336254553|ref|YP_004597660.1| - 0.055 13.4 0.3 0.17 11.8 0.1 2.0 2 0 0 2 2 2 0 Nudix N-terminal zinc_ribbon_10 PF10058.9 gi|336254553|ref|YP_004597660.1| - 0.071 12.9 0.1 0.22 11.3 0.0 1.8 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein Acetone_carb_G PF08882.11 gi|336254553|ref|YP_004597660.1| - 0.16 12.2 0.2 2.4 8.3 0.1 2.1 1 1 1 2 2 2 0 Acetone carboxylase gamma subunit IF-2B PF01008.17 gi|336254555|ref|YP_004597662.1| - 1.1e-48 165.9 0.7 1.3e-48 165.7 0.7 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family ApoLp-III PF07464.11 gi|336254555|ref|YP_004597662.1| - 0.047 13.8 2.4 0.068 13.3 1.9 1.5 1 1 0 1 1 1 0 Apolipophorin-III precursor (apoLp-III) MerR-DNA-bind PF09278.11 gi|336254555|ref|YP_004597662.1| - 0.46 11.1 2.2 2.8 8.5 0.5 2.3 2 0 0 2 2 2 0 MerR, DNA binding ThuA PF06283.11 gi|336254556|ref|YP_004597663.1| - 3e-32 112.6 0.1 3.6e-32 112.3 0.1 1.0 1 0 0 1 1 1 1 Trehalose utilisation GFO_IDH_MocA PF01408.22 gi|336254557|ref|YP_004597664.1| - 1.7e-28 99.8 0.9 3.8e-28 98.7 0.3 1.8 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|336254557|ref|YP_004597664.1| - 2.5e-08 33.9 0.0 4.8e-08 33.0 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain NAD_binding_2 PF03446.15 gi|336254557|ref|YP_004597664.1| - 0.00044 20.5 0.1 0.00099 19.3 0.1 1.7 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|336254557|ref|YP_004597664.1| - 0.0017 18.9 0.0 0.0036 17.8 0.0 1.6 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_3 PF03447.16 gi|336254557|ref|YP_004597664.1| - 0.0027 18.3 0.5 0.0046 17.6 0.5 1.4 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|336254557|ref|YP_004597664.1| - 0.0028 17.0 0.0 0.0057 16.0 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|336254557|ref|YP_004597664.1| - 0.021 14.4 0.1 0.041 13.4 0.1 1.5 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain Sacchrp_dh_NADP PF03435.18 gi|336254557|ref|YP_004597664.1| - 0.094 13.0 0.1 0.29 11.4 0.1 1.8 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain CoA_binding PF02629.19 gi|336254557|ref|YP_004597664.1| - 0.095 13.4 0.2 0.36 11.5 0.1 2.0 2 0 0 2 2 2 0 CoA binding domain Proteasome PF00227.26 gi|336254558|ref|YP_004597665.1| - 1.1e-44 152.2 0.1 1.3e-44 152.0 0.1 1.0 1 0 0 1 1 1 1 Proteasome subunit Ost4 PF10215.9 gi|336254559|ref|YP_004597666.1| - 0.046 13.5 0.5 0.081 12.8 0.5 1.4 1 0 0 1 1 1 0 Oligosaccaryltransferase DUF555 PF04475.12 gi|336254560|ref|YP_004597667.1| - 5.9e-47 158.1 0.1 7e-47 157.9 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF555) CBS PF00571.28 gi|336254561|ref|YP_004597668.1| - 3.3e-22 78.7 0.1 7.2e-11 42.4 0.0 2.3 2 0 0 2 2 2 2 CBS domain HTH_31 PF13560.6 gi|336254561|ref|YP_004597668.1| - 6.3e-12 45.7 2.5 1.2e-11 44.8 2.5 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|336254561|ref|YP_004597668.1| - 8.3e-12 45.0 0.3 2e-11 43.8 0.3 1.6 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|336254561|ref|YP_004597668.1| - 1.6e-07 31.3 0.0 3e-07 30.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|336254561|ref|YP_004597668.1| - 7.3e-05 22.6 1.1 0.00036 20.3 0.1 2.5 2 1 1 3 3 3 1 Helix-turn-helix domain HTH_37 PF13744.6 gi|336254561|ref|YP_004597668.1| - 0.0001 22.2 0.1 0.00031 20.6 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain Pou PF00157.17 gi|336254561|ref|YP_004597668.1| - 0.0037 17.2 0.1 0.012 15.5 0.0 2.0 2 1 0 2 2 2 1 Pou domain - N-terminal to homeobox domain HTH_26 PF13443.6 gi|336254561|ref|YP_004597668.1| - 0.0046 17.4 0.1 0.01 16.3 0.0 1.7 2 0 0 2 2 2 1 Cro/C1-type HTH DNA-binding domain HTH_24 PF13412.6 gi|336254561|ref|YP_004597668.1| - 0.053 13.1 0.2 1.2 8.8 0.0 2.6 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Sigma70_r4 PF04545.16 gi|336254561|ref|YP_004597668.1| - 0.099 12.2 0.1 1.3 8.6 0.1 2.7 3 0 0 3 3 3 0 Sigma-70, region 4 DUF3618 PF12277.8 gi|336254561|ref|YP_004597668.1| - 0.27 11.5 3.0 0.28 11.5 0.9 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3618) HTH_20 PF12840.7 gi|336254562|ref|YP_004597669.1| - 2.3e-10 40.4 0.2 3.4e-10 39.8 0.2 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|336254562|ref|YP_004597669.1| - 2e-06 27.6 0.0 2.8e-06 27.1 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|336254562|ref|YP_004597669.1| - 0.013 15.2 0.0 0.023 14.5 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|336254562|ref|YP_004597669.1| - 0.013 15.3 0.0 0.023 14.6 0.0 1.4 1 0 0 1 1 1 0 MarR family Rrf2 PF02082.20 gi|336254562|ref|YP_004597669.1| - 0.036 14.4 0.0 0.058 13.7 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator HTH_5 PF01022.20 gi|336254562|ref|YP_004597669.1| - 0.044 13.7 0.0 0.065 13.1 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family DUF742 PF05331.11 gi|336254562|ref|YP_004597669.1| - 0.082 12.7 0.1 0.12 12.2 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF742) CobA_CobO_BtuR PF02572.15 gi|336254563|ref|YP_004597670.1| - 5.6e-52 176.5 0.0 6.8e-52 176.2 0.0 1.1 1 0 0 1 1 1 1 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CbiA PF01656.23 gi|336254563|ref|YP_004597670.1| - 0.06 13.4 0.0 0.077 13.1 0.0 1.4 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain ABC_tran PF00005.27 gi|336254564|ref|YP_004597671.1| - 2.5e-23 83.1 0.0 4.6e-23 82.3 0.0 1.4 2 0 0 2 2 1 1 ABC transporter AAA_21 PF13304.6 gi|336254564|ref|YP_004597671.1| - 7.6e-11 42.4 0.1 4.1e-05 23.5 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|336254564|ref|YP_004597671.1| - 0.00025 21.6 0.1 0.00039 21.0 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|336254564|ref|YP_004597671.1| - 0.0016 18.2 0.0 1 9.0 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.6 gi|336254564|ref|YP_004597671.1| - 0.0088 15.8 0.0 0.02 14.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|336254564|ref|YP_004597671.1| - 0.023 14.4 0.0 0.05 13.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain MukB PF04310.12 gi|336254564|ref|YP_004597671.1| - 0.026 14.4 0.0 0.044 13.6 0.0 1.3 1 0 0 1 1 1 0 MukB N-terminal MeaB PF03308.16 gi|336254564|ref|YP_004597671.1| - 0.031 13.3 0.1 0.046 12.7 0.1 1.2 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB RsgA_GTPase PF03193.16 gi|336254564|ref|YP_004597671.1| - 0.034 14.0 0.0 0.38 10.6 0.0 2.1 2 0 0 2 2 2 0 RsgA GTPase AAA_27 PF13514.6 gi|336254564|ref|YP_004597671.1| - 0.059 12.9 0.0 0.098 12.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.6 gi|336254564|ref|YP_004597671.1| - 0.066 11.9 0.1 6.4 5.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|336254564|ref|YP_004597671.1| - 0.073 13.4 0.0 0.13 12.6 0.0 1.8 1 1 0 1 1 1 0 AAA ATPase domain AAA_33 PF13671.6 gi|336254564|ref|YP_004597671.1| - 0.074 13.2 0.0 0.24 11.6 0.0 1.8 1 1 0 1 1 1 0 AAA domain SMC_N PF02463.19 gi|336254564|ref|YP_004597671.1| - 0.091 12.2 0.0 8.2 5.8 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain SRP54 PF00448.22 gi|336254564|ref|YP_004597671.1| - 0.11 12.1 0.0 0.21 11.2 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_28 PF13521.6 gi|336254564|ref|YP_004597671.1| - 0.15 12.3 0.1 0.48 10.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain Sigma_M_inh PF17453.2 gi|336254565|ref|YP_004597672.1| - 0.76 10.3 6.1 0.23 11.9 1.9 2.3 2 0 0 2 2 2 0 Sigma-M inhibitor Iron_transport PF10634.9 gi|336254566|ref|YP_004597673.1| - 5.3e-06 26.7 0.0 1.8e-05 25.0 0.0 1.8 2 0 0 2 2 2 1 Fe2+ transport protein DUF2243 PF10002.9 gi|336254567|ref|YP_004597674.1| - 8.2e-41 139.4 11.4 9.4e-41 139.2 11.4 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2243) Peptidase_A8 PF01252.18 gi|336254567|ref|YP_004597674.1| - 0.39 11.0 4.6 0.23 11.7 2.9 1.5 1 1 0 1 1 1 0 Signal peptidase (SPase) II GATase_3 PF07685.14 gi|336254568|ref|YP_004597675.1| - 1.1e-38 132.8 0.0 2.1e-38 131.9 0.0 1.5 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.23 gi|336254568|ref|YP_004597675.1| - 3.1e-22 79.0 0.0 5.1e-22 78.3 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 gi|336254568|ref|YP_004597675.1| - 1.4e-18 67.4 0.0 9.5e-18 64.7 0.0 2.2 1 1 0 1 1 1 1 AAA domain RHH_1 PF01402.21 gi|336254569|ref|YP_004597676.1| - 0.08 12.9 0.0 0.18 11.8 0.0 1.6 1 0 0 1 1 1 0 Ribbon-helix-helix protein, copG family MTH865 PF07747.11 gi|336254570|ref|YP_004597677.1| - 2.3e-31 107.4 0.1 2.6e-31 107.2 0.1 1.0 1 0 0 1 1 1 1 MTH865-like family BAT PF15915.5 gi|336254571|ref|YP_004597678.1| - 4.4e-44 150.1 8.3 4.4e-44 150.1 8.3 3.8 4 1 1 5 5 4 1 GAF and HTH_10 associated domain HTH_10 PF04967.12 gi|336254571|ref|YP_004597678.1| - 1.1e-18 66.7 0.0 5.4e-18 64.5 0.0 2.2 2 0 0 2 2 2 1 HTH DNA binding domain PAS_4 PF08448.10 gi|336254571|ref|YP_004597678.1| - 4.4e-14 52.7 0.7 4.4e-14 52.7 0.7 3.7 4 0 0 4 4 4 1 PAS fold GAF_2 PF13185.6 gi|336254571|ref|YP_004597678.1| - 4.1e-13 49.8 1.0 4.1e-13 49.8 1.0 3.0 3 1 0 4 4 4 1 GAF domain H_kinase_N PF12282.8 gi|336254571|ref|YP_004597678.1| - 9.2e-05 22.4 0.8 0.0031 17.5 0.1 2.8 2 0 0 2 2 2 1 Signal transduction histidine kinase GAF PF01590.26 gi|336254571|ref|YP_004597678.1| - 0.00017 22.3 0.0 0.00058 20.5 0.0 2.1 1 1 0 1 1 1 1 GAF domain GAF_3 PF13492.6 gi|336254571|ref|YP_004597678.1| - 0.00021 21.7 0.1 0.0005 20.4 0.1 1.6 1 0 0 1 1 1 1 GAF domain PAS_9 PF13426.7 gi|336254571|ref|YP_004597678.1| - 0.00084 19.6 0.0 0.0027 17.9 0.0 2.0 1 0 0 1 1 1 1 PAS domain Sigma70_r4 PF04545.16 gi|336254571|ref|YP_004597678.1| - 0.0015 18.0 0.0 0.0082 15.6 0.0 2.3 2 0 0 2 2 2 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.12 gi|336254571|ref|YP_004597678.1| - 0.0017 18.0 0.0 0.006 16.2 0.0 2.0 2 0 0 2 2 2 1 Sigma-70, region 4 Autoind_bind PF03472.15 gi|336254571|ref|YP_004597678.1| - 0.066 12.7 0.0 0.19 11.2 0.0 1.8 1 0 0 1 1 1 0 Autoinducer binding domain HTH_5 PF01022.20 gi|336254571|ref|YP_004597678.1| - 0.15 11.9 0.3 0.95 9.4 0.0 2.4 3 0 0 3 3 3 0 Bacterial regulatory protein, arsR family ThiI PF02568.14 gi|336254572|ref|YP_004597679.1| - 2e-43 148.3 0.0 3e-43 147.7 0.0 1.2 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.17 gi|336254572|ref|YP_004597679.1| - 6.4e-17 62.0 0.0 1.3e-16 61.0 0.0 1.5 1 0 0 1 1 1 1 THUMP domain QueC PF06508.13 gi|336254572|ref|YP_004597679.1| - 2.3e-05 24.0 0.0 0.23 10.9 0.0 2.5 2 1 0 2 2 2 2 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|336254572|ref|YP_004597679.1| - 0.00058 18.8 0.0 0.00081 18.3 0.0 1.2 1 0 0 1 1 1 1 tRNA methyl transferase ATP_bind_3 PF01171.20 gi|336254572|ref|YP_004597679.1| - 0.049 13.4 0.1 0.59 9.9 0.1 2.3 1 1 0 1 1 1 0 PP-loop family MFS_1 PF07690.16 gi|336254573|ref|YP_004597680.1| - 6e-44 150.4 54.4 3.1e-26 92.1 27.6 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|336254573|ref|YP_004597680.1| - 0.0019 17.1 19.5 0.022 13.7 0.1 3.3 1 1 2 3 3 3 3 MFS_1 like family OATP PF03137.20 gi|336254573|ref|YP_004597680.1| - 0.0027 16.1 2.2 0.003 15.9 0.7 1.7 1 1 1 2 2 2 1 Organic Anion Transporter Polypeptide (OATP) family AdoMet_Synthase PF01941.19 gi|336254574|ref|YP_004597681.1| - 2.1e-173 576.7 6.9 2.4e-173 576.5 6.9 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) S-AdoMet_synt_N PF00438.20 gi|336254574|ref|YP_004597681.1| - 0.0055 17.4 1.0 0.015 16.0 0.0 2.3 3 0 0 3 3 3 1 S-adenosylmethionine synthetase, N-terminal domain DUF961 PF06125.11 gi|336254574|ref|YP_004597681.1| - 0.011 16.0 0.3 0.34 11.3 0.1 2.4 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF961) Asp23 PF03780.13 gi|336254574|ref|YP_004597681.1| - 0.73 10.3 7.1 4.7 7.7 1.8 3.4 2 1 0 2 2 2 0 Asp23 family, cell envelope-related function CYTH PF01928.21 gi|336254575|ref|YP_004597682.1| - 3e-34 118.5 8.4 1.2e-33 116.5 8.4 1.8 1 1 0 1 1 1 1 CYTH domain FKBP_C PF00254.28 gi|336254576|ref|YP_004597683.1| - 1.6e-07 31.5 0.3 4.4e-07 30.1 0.2 1.8 1 1 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase ScdA_N PF04405.14 gi|336254576|ref|YP_004597683.1| - 0.06 13.0 0.2 0.16 11.7 0.2 1.7 1 0 0 1 1 1 0 Domain of Unknown function (DUF542) ATPase PF06745.13 gi|336254577|ref|YP_004597684.1| - 3.5e-07 29.8 0.0 0.0004 19.8 0.0 2.2 2 1 0 2 2 2 2 KaiC OTCace_N PF02729.21 gi|336254578|ref|YP_004597685.1| - 1.6e-45 154.8 0.0 7.6e-45 152.6 0.0 2.0 2 1 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.24 gi|336254578|ref|YP_004597685.1| - 1.8e-31 109.4 0.0 2.4e-31 108.9 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DUF2586 PF10758.9 gi|336254578|ref|YP_004597685.1| - 0.2 10.8 0.0 0.28 10.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2586) PyrI PF01948.18 gi|336254579|ref|YP_004597686.1| - 6.4e-33 112.9 0.5 8.1e-33 112.5 0.5 1.1 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.15 gi|336254579|ref|YP_004597686.1| - 5.4e-12 45.4 0.2 1.1e-11 44.5 0.2 1.5 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain HTH_10 PF04967.12 gi|336254584|ref|YP_004597691.1| - 2.6e-18 65.6 0.1 4.4e-18 64.8 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|336254584|ref|YP_004597691.1| - 7.7e-12 45.3 0.8 1.3e-11 44.6 0.8 1.5 1 0 0 1 1 1 1 GAF and HTH_10 associated domain MarR_2 PF12802.7 gi|336254584|ref|YP_004597691.1| - 0.00032 20.5 0.3 0.0012 18.6 0.0 2.0 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.6 gi|336254584|ref|YP_004597691.1| - 0.0013 18.3 0.0 0.0024 17.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|336254584|ref|YP_004597691.1| - 0.021 14.6 0.1 0.045 13.6 0.1 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Phage_CI_repr PF07022.13 gi|336254584|ref|YP_004597691.1| - 0.026 14.6 0.0 0.079 13.1 0.0 1.8 2 0 0 2 2 2 0 Bacteriophage CI repressor helix-turn-helix domain UPF0122 PF04297.14 gi|336254584|ref|YP_004597691.1| - 0.033 14.4 0.0 0.055 13.7 0.0 1.3 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_psq PF05225.16 gi|336254584|ref|YP_004597691.1| - 0.035 13.8 0.0 0.087 12.6 0.0 1.7 1 0 0 1 1 1 0 helix-turn-helix, Psq domain Sigma70_r4 PF04545.16 gi|336254584|ref|YP_004597691.1| - 0.036 13.6 0.1 0.069 12.7 0.1 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 BPD_transp_1 PF00528.22 gi|336254585|ref|YP_004597692.1| - 6.4e-16 58.6 13.7 6.4e-16 58.6 13.7 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_11 PF13531.6 gi|336254586|ref|YP_004597693.1| - 1.5e-28 100.1 0.2 2.1e-28 99.6 0.2 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|336254586|ref|YP_004597693.1| - 1.6e-05 25.0 0.0 0.00035 20.6 0.0 2.2 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein MobB PF03205.14 gi|336254587|ref|YP_004597694.1| - 5.5e-23 81.3 0.0 1.9e-17 63.4 0.0 2.1 2 0 0 2 2 2 2 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.6 gi|336254587|ref|YP_004597694.1| - 0.00014 22.3 0.1 0.0044 17.4 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain GTP_EFTU PF00009.27 gi|336254587|ref|YP_004597694.1| - 0.00065 19.3 0.0 0.0012 18.4 0.0 1.5 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain SRPRB PF09439.10 gi|336254587|ref|YP_004597694.1| - 0.0045 16.5 0.0 0.0066 15.9 0.0 1.3 1 0 0 1 1 1 1 Signal recognition particle receptor beta subunit cobW PF02492.19 gi|336254587|ref|YP_004597694.1| - 0.0049 16.5 0.0 0.021 14.4 0.0 1.8 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_18 PF13238.6 gi|336254587|ref|YP_004597694.1| - 0.005 17.4 0.0 0.025 15.1 0.0 1.9 2 0 0 2 2 2 1 AAA domain PduV-EutP PF10662.9 gi|336254587|ref|YP_004597694.1| - 0.0098 15.6 0.0 0.017 14.8 0.0 1.4 1 0 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation RsgA_GTPase PF03193.16 gi|336254587|ref|YP_004597694.1| - 0.036 14.0 0.0 0.098 12.6 0.0 1.7 2 1 0 2 2 2 0 RsgA GTPase AAA_33 PF13671.6 gi|336254587|ref|YP_004597694.1| - 0.045 13.9 0.0 0.11 12.7 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|336254587|ref|YP_004597694.1| - 0.091 13.0 0.0 0.15 12.4 0.0 1.5 1 1 1 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|336254587|ref|YP_004597694.1| - 0.1 12.3 0.0 0.15 11.8 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|336254587|ref|YP_004597694.1| - 0.1 12.3 0.0 0.21 11.3 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain MMR_HSR1 PF01926.23 gi|336254587|ref|YP_004597694.1| - 0.1 12.7 0.0 0.24 11.5 0.0 1.5 1 1 0 1 1 1 0 50S ribosome-binding GTPase Roc PF08477.13 gi|336254587|ref|YP_004597694.1| - 0.11 12.7 0.0 0.16 12.2 0.0 1.3 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase T2SSE PF00437.20 gi|336254587|ref|YP_004597694.1| - 0.12 11.4 0.0 0.17 10.9 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein NACHT PF05729.12 gi|336254587|ref|YP_004597694.1| - 0.13 12.2 0.0 0.26 11.2 0.0 1.5 1 0 0 1 1 1 0 NACHT domain TniB PF05621.11 gi|336254587|ref|YP_004597694.1| - 0.14 11.6 0.0 0.18 11.2 0.0 1.2 1 0 0 1 1 1 0 Bacterial TniB protein AAA_14 PF13173.6 gi|336254587|ref|YP_004597694.1| - 0.14 12.2 0.0 0.25 11.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|336254587|ref|YP_004597694.1| - 0.17 11.8 0.0 0.29 11.0 0.0 1.4 2 0 0 2 2 1 0 ATPase domain predominantly from Archaea AAA_5 PF07728.14 gi|336254587|ref|YP_004597694.1| - 0.17 11.9 0.0 0.26 11.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) RNA_helicase PF00910.22 gi|336254587|ref|YP_004597694.1| - 0.17 12.3 0.0 0.24 11.8 0.0 1.3 1 0 0 1 1 1 0 RNA helicase PRK PF00485.18 gi|336254587|ref|YP_004597694.1| - 0.17 11.6 0.0 0.26 11.0 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family Nitrate_red_del PF02613.15 gi|336254588|ref|YP_004597695.1| - 5.9e-20 71.7 0.2 1.4e-19 70.4 0.3 1.6 1 1 1 2 2 2 1 Nitrate reductase delta subunit Fer4_11 PF13247.6 gi|336254589|ref|YP_004597696.1| - 6.9e-32 109.6 7.0 6.9e-32 109.6 7.0 1.8 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|336254589|ref|YP_004597696.1| - 2e-07 31.5 18.3 8.6e-05 23.1 7.0 3.5 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|336254589|ref|YP_004597696.1| - 1.5e-05 25.0 21.2 0.0018 18.3 7.4 3.3 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|336254589|ref|YP_004597696.1| - 1.5e-05 25.0 16.7 0.016 15.4 5.1 3.4 2 1 2 4 4 4 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|336254589|ref|YP_004597696.1| - 0.00041 20.3 23.4 0.013 15.6 1.2 4.6 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4 PF00037.27 gi|336254589|ref|YP_004597696.1| - 0.00066 19.4 18.9 0.036 13.9 0.9 4.7 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_21 PF14697.6 gi|336254589|ref|YP_004597696.1| - 0.00098 19.2 20.2 0.019 15.1 0.7 3.3 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|336254589|ref|YP_004597696.1| - 0.0014 19.1 8.4 0.061 13.9 0.2 3.7 3 0 0 3 3 3 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_6 PF12837.7 gi|336254589|ref|YP_004597696.1| - 0.0076 16.3 25.4 0.27 11.4 0.7 4.6 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_16 PF13484.6 gi|336254589|ref|YP_004597696.1| - 0.31 12.0 16.5 4.9 8.2 0.7 3.7 3 0 0 3 3 3 0 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|336254589|ref|YP_004597696.1| - 0.4 11.2 0.0 0.4 11.2 0.0 3.9 3 2 0 3 3 2 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|336254589|ref|YP_004597696.1| - 0.55 10.8 19.4 0.75 10.4 0.1 3.9 3 1 1 4 4 4 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|336254589|ref|YP_004597696.1| - 1.8 8.8 9.3 31 4.8 0.0 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_19 PF06902.11 gi|336254589|ref|YP_004597696.1| - 2 8.6 8.4 0.056 13.5 1.3 2.1 2 0 0 2 2 1 0 Divergent 4Fe-4S mono-cluster Molybdopterin PF00384.22 gi|336254590|ref|YP_004597697.1| - 1.9e-34 119.4 0.1 4e-30 105.1 0.0 2.2 2 0 0 2 2 2 2 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|336254590|ref|YP_004597697.1| - 0.00016 21.7 0.3 0.00087 19.3 0.0 2.4 3 0 0 3 3 3 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|336254590|ref|YP_004597697.1| - 0.0062 16.5 0.1 0.017 15.1 0.1 1.8 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain ParA PF10609.9 gi|336254591|ref|YP_004597698.1| - 4.1e-51 173.8 0.0 5.3e-51 173.4 0.0 1.1 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|336254591|ref|YP_004597698.1| - 5.5e-11 42.6 0.0 9.9e-11 41.8 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|336254591|ref|YP_004597698.1| - 6.7e-07 29.4 1.0 1.9e-06 27.9 0.4 1.8 2 0 0 2 2 2 1 AAA domain MipZ PF09140.11 gi|336254591|ref|YP_004597698.1| - 0.00036 19.9 0.3 0.00057 19.2 0.3 1.2 1 0 0 1 1 1 1 ATPase MipZ VirC1 PF07015.11 gi|336254591|ref|YP_004597698.1| - 0.0025 17.1 0.1 0.0064 15.8 0.1 1.6 2 0 0 2 2 2 1 VirC1 protein ArsA_ATPase PF02374.15 gi|336254591|ref|YP_004597698.1| - 0.0029 16.9 0.8 0.0044 16.2 0.8 1.2 1 0 0 1 1 1 1 Anion-transporting ATPase FeS_assembly_P PF01883.19 gi|336254591|ref|YP_004597698.1| - 0.0054 16.9 1.4 0.0054 16.9 1.4 2.9 3 0 0 3 3 3 1 Iron-sulfur cluster assembly protein CBP_BcsQ PF06564.12 gi|336254591|ref|YP_004597698.1| - 0.0063 16.0 0.4 0.013 15.0 0.2 1.5 2 0 0 2 2 2 1 Cellulose biosynthesis protein BcsQ LpxK PF02606.14 gi|336254591|ref|YP_004597698.1| - 0.012 14.7 0.2 0.018 14.2 0.2 1.2 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase AAA_26 PF13500.6 gi|336254591|ref|YP_004597698.1| - 0.024 14.4 0.3 0.21 11.4 0.2 2.2 2 0 0 2 2 2 0 AAA domain Polyketide_cyc2 PF10604.9 gi|336254592|ref|YP_004597699.1| - 0.015 15.6 0.9 0.02 15.2 0.9 1.2 1 0 0 1 1 1 0 Polyketide cyclase / dehydrase and lipid transport UbiA PF01040.18 gi|336254593|ref|YP_004597700.1| - 6.9e-29 100.9 19.8 9.6e-29 100.4 19.8 1.2 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF3742 PF12553.8 gi|336254593|ref|YP_004597700.1| - 0.42 10.7 6.1 3.7 7.7 0.8 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3742) HTH_20 PF12840.7 gi|336254594|ref|YP_004597701.1| - 7.4e-05 22.7 4.2 0.00012 22.1 2.3 2.3 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|336254594|ref|YP_004597701.1| - 0.075 12.9 0.1 12 5.9 0.0 2.5 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family YyzF PF14116.6 gi|336254594|ref|YP_004597701.1| - 7.1 6.7 6.0 1.3 9.1 1.2 2.2 2 0 0 2 2 2 0 YyzF-like protein HalOD1 PF18545.1 gi|336254595|ref|YP_004597702.1| - 1.8e-18 66.5 0.2 2.5e-18 66.1 0.2 1.2 1 0 0 1 1 1 1 Halobacterial output domain 1 NQRA PF05896.11 gi|336254596|ref|YP_004597703.1| - 0.13 11.7 0.0 0.17 11.3 0.0 1.1 1 0 0 1 1 1 0 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) TrkA_N PF02254.18 gi|336254597|ref|YP_004597704.1| - 1.2e-20 73.9 1.8 2.2e-20 73.1 0.8 2.0 2 0 0 2 2 1 1 TrkA-N domain DHH PF01368.20 gi|336254597|ref|YP_004597704.1| - 1.2e-13 51.1 2.9 3.8e-12 46.3 1.2 2.4 2 0 0 2 2 2 1 DHH family F420_oxidored PF03807.17 gi|336254597|ref|YP_004597704.1| - 2.2e-09 37.8 0.3 8.2e-09 35.9 0.1 2.1 2 0 0 2 2 1 1 NADP oxidoreductase coenzyme F420-dependent Sacchrp_dh_NADP PF03435.18 gi|336254597|ref|YP_004597704.1| - 3.8e-08 33.6 0.1 1.5e-07 31.8 0.1 2.1 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain ApbA PF02558.16 gi|336254597|ref|YP_004597704.1| - 4.3e-07 29.7 0.0 1.2e-06 28.2 0.0 1.8 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA DHHA1 PF02272.19 gi|336254597|ref|YP_004597704.1| - 1e-05 26.0 0.2 5e-05 23.7 0.0 2.2 2 1 0 2 2 2 1 DHHA1 domain NAD_binding_2 PF03446.15 gi|336254597|ref|YP_004597704.1| - 4.5e-05 23.7 0.0 9.4e-05 22.6 0.0 1.6 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_7 PF13241.6 gi|336254597|ref|YP_004597704.1| - 6.2e-05 23.4 0.2 0.00022 21.6 0.2 2.0 1 0 0 1 1 1 1 Putative NAD(P)-binding Shikimate_DH PF01488.20 gi|336254597|ref|YP_004597704.1| - 6.2e-05 23.1 0.0 0.00018 21.6 0.0 1.7 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase NAD_binding_10 PF13460.6 gi|336254597|ref|YP_004597704.1| - 0.0001 22.2 1.7 0.0001 22.2 1.7 1.8 2 1 0 2 2 2 1 NAD(P)H-binding UDPG_MGDP_dh_N PF03721.14 gi|336254597|ref|YP_004597704.1| - 0.00014 21.5 0.0 0.00036 20.2 0.0 1.7 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain IlvN PF07991.12 gi|336254597|ref|YP_004597704.1| - 0.00015 21.4 0.2 0.0003 20.4 0.2 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain Epimerase PF01370.21 gi|336254597|ref|YP_004597704.1| - 0.0002 20.9 0.2 0.00047 19.7 0.1 1.6 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family FAD_binding_3 PF01494.19 gi|336254597|ref|YP_004597704.1| - 0.00052 19.4 0.0 0.0012 18.2 0.0 1.5 1 0 0 1 1 1 1 FAD binding domain 2-Hacid_dh_C PF02826.19 gi|336254597|ref|YP_004597704.1| - 0.0025 17.2 0.0 0.0072 15.7 0.0 1.7 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.18 gi|336254597|ref|YP_004597704.1| - 0.0058 16.5 0.0 0.014 15.3 0.0 1.7 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|336254597|ref|YP_004597704.1| - 0.0063 16.5 0.0 0.012 15.6 0.0 1.5 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AlaDh_PNT_C PF01262.21 gi|336254597|ref|YP_004597704.1| - 0.0075 15.6 0.2 0.02 14.2 0.2 1.7 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain adh_short PF00106.25 gi|336254597|ref|YP_004597704.1| - 0.01 15.3 1.0 0.034 13.6 0.1 2.4 3 1 1 4 4 4 0 short chain dehydrogenase XdhC_C PF13478.6 gi|336254597|ref|YP_004597704.1| - 0.03 14.8 0.4 0.11 13.0 0.0 2.2 2 1 0 2 2 2 0 XdhC Rossmann domain adh_short_C2 PF13561.6 gi|336254597|ref|YP_004597704.1| - 0.034 13.7 5.0 0.041 13.4 0.4 2.9 3 0 0 3 3 3 0 Enoyl-(Acyl carrier protein) reductase DAO PF01266.24 gi|336254597|ref|YP_004597704.1| - 0.04 13.5 0.7 0.089 12.3 0.1 1.8 2 1 0 2 2 2 0 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|336254597|ref|YP_004597704.1| - 0.15 12.3 0.0 0.39 11.0 0.0 1.7 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain UPF0126 PF03458.13 gi|336254598|ref|YP_004597705.1| - 4.3e-33 113.0 25.9 1.3e-18 66.6 8.3 2.6 2 1 0 2 2 2 2 UPF0126 domain PRC PF05239.16 gi|336254599|ref|YP_004597706.1| - 4.8e-11 42.6 1.9 6.3e-11 42.2 1.9 1.1 1 0 0 1 1 1 1 PRC-barrel domain RcnB PF11776.8 gi|336254599|ref|YP_004597706.1| - 0.014 15.5 0.4 0.026 14.6 0.4 1.4 1 0 0 1 1 1 0 Nickel/cobalt transporter regulator AAA_26 PF13500.6 gi|336254600|ref|YP_004597707.1| - 7.4e-37 127.1 0.0 1.3e-36 126.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain DRTGG PF07085.12 gi|336254600|ref|YP_004597707.1| - 3.7e-29 100.6 0.1 1.3e-28 98.8 0.0 1.9 2 0 0 2 2 2 1 DRTGG domain CbiA PF01656.23 gi|336254600|ref|YP_004597707.1| - 0.00091 19.3 0.0 0.003 17.6 0.0 1.9 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ATP-grasp_5 PF13549.6 gi|336254601|ref|YP_004597708.1| - 6.6e-74 248.1 0.1 1.5e-73 246.9 0.1 1.6 1 0 0 1 1 1 1 ATP-grasp domain Succ_CoA_lig PF13607.6 gi|336254601|ref|YP_004597708.1| - 3.4e-54 182.4 1.2 2.2e-52 176.5 0.1 2.7 3 0 0 3 3 3 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|336254601|ref|YP_004597708.1| - 2.1e-24 86.2 0.8 2.7e-23 82.7 0.1 3.1 3 0 0 3 3 3 1 CoA binding domain CoA_binding PF02629.19 gi|336254601|ref|YP_004597708.1| - 3.3e-12 46.9 0.1 1.3e-11 45.0 0.1 2.1 1 0 0 1 1 1 1 CoA binding domain ATP-grasp_2 PF08442.10 gi|336254601|ref|YP_004597708.1| - 0.0002 21.0 0.0 0.00045 19.8 0.0 1.6 1 0 0 1 1 1 1 ATP-grasp domain Lipase_GDSL_2 PF13472.6 gi|336254601|ref|YP_004597708.1| - 0.045 14.2 0.3 17 5.7 0.0 3.9 2 2 0 4 4 4 0 GDSL-like Lipase/Acylhydrolase family HRDC PF00570.23 gi|336254601|ref|YP_004597708.1| - 0.065 13.2 0.0 0.17 11.9 0.0 1.7 1 0 0 1 1 1 0 HRDC domain ABC-3 PF00950.17 gi|336254602|ref|YP_004597709.1| - 7.4e-56 189.5 33.4 7.4e-56 189.5 33.4 1.5 2 0 0 2 2 2 1 ABC 3 transport family FecCD PF01032.18 gi|336254602|ref|YP_004597709.1| - 5.3e-06 25.6 33.4 5.3e-06 25.6 33.4 1.9 1 1 0 2 2 2 1 FecCD transport family DUF2407_C PF13373.6 gi|336254602|ref|YP_004597709.1| - 5.1 7.3 5.7 0.85 9.8 0.9 2.1 2 0 0 2 2 2 0 DUF2407 C-terminal domain ABC_tran PF00005.27 gi|336254603|ref|YP_004597710.1| - 4.2e-31 108.3 0.0 5.7e-31 107.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|336254603|ref|YP_004597710.1| - 1.1e-12 48.5 0.2 1.2e-05 25.3 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|336254603|ref|YP_004597710.1| - 0.00025 20.6 0.1 0.15 11.5 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|336254603|ref|YP_004597710.1| - 0.00044 20.7 0.5 0.00093 19.6 0.5 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|336254603|ref|YP_004597710.1| - 0.00082 19.7 0.5 0.0084 16.4 0.5 2.1 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|336254603|ref|YP_004597710.1| - 0.0011 18.7 0.2 0.0021 17.8 0.2 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain Peripla_BP_4 PF13407.6 gi|336254603|ref|YP_004597710.1| - 0.0034 17.0 0.0 0.0056 16.3 0.0 1.3 1 0 0 1 1 1 1 Periplasmic binding protein domain AAA_23 PF13476.6 gi|336254603|ref|YP_004597710.1| - 0.0038 17.7 0.0 0.0054 17.3 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|336254603|ref|YP_004597710.1| - 0.005 16.6 0.0 0.017 14.9 0.0 1.6 1 1 0 2 2 2 1 AAA ATPase domain AAA_33 PF13671.6 gi|336254603|ref|YP_004597710.1| - 0.011 16.0 0.1 0.051 13.7 0.1 2.0 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|336254603|ref|YP_004597710.1| - 0.03 14.2 0.1 0.098 12.6 0.0 1.8 2 0 0 2 2 2 0 NTPase MobB PF03205.14 gi|336254603|ref|YP_004597710.1| - 0.053 13.4 0.0 0.28 11.1 0.0 2.1 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B Mg_chelatase PF01078.21 gi|336254603|ref|YP_004597710.1| - 0.055 12.8 0.0 0.1 12.0 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI SbcCD_C PF13558.6 gi|336254603|ref|YP_004597710.1| - 0.085 13.1 2.0 0.62 10.3 0.4 2.5 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit AAA_5 PF07728.14 gi|336254603|ref|YP_004597710.1| - 0.086 12.8 0.1 0.21 11.6 0.1 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) cobW PF02492.19 gi|336254603|ref|YP_004597710.1| - 0.15 11.6 0.7 0.29 10.7 0.2 1.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA PF00004.29 gi|336254603|ref|YP_004597710.1| - 0.16 12.4 0.0 0.95 9.9 0.0 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.6 gi|336254603|ref|YP_004597710.1| - 0.25 10.9 5.8 2.8 7.5 0.0 2.9 3 0 0 3 3 3 0 AAA domain ZnuA PF01297.17 gi|336254604|ref|YP_004597711.1| - 1.1e-41 143.0 4.9 1.4e-41 142.7 4.9 1.1 1 0 0 1 1 1 1 Zinc-uptake complex component A periplasmic TAT_signal PF10518.9 gi|336254604|ref|YP_004597711.1| - 0.048 13.5 3.2 0.1 12.5 3.2 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Zip PF02535.22 gi|336254604|ref|YP_004597711.1| - 0.15 11.3 15.7 0.21 10.8 15.7 1.1 1 0 0 1 1 1 0 ZIP Zinc transporter SAPS PF04499.15 gi|336254604|ref|YP_004597711.1| - 0.17 10.6 5.1 0.25 10.1 5.1 1.3 1 0 0 1 1 1 0 SIT4 phosphatase-associated protein BUD22 PF09073.10 gi|336254604|ref|YP_004597711.1| - 1 8.6 14.7 1.4 8.2 14.7 1.1 1 0 0 1 1 1 0 BUD22 CDC45 PF02724.14 gi|336254604|ref|YP_004597711.1| - 1.4 7.1 15.1 1.7 6.8 15.1 1.1 1 0 0 1 1 1 0 CDC45-like protein SDA1 PF05285.12 gi|336254604|ref|YP_004597711.1| - 2.3 7.6 22.2 3.1 7.1 22.2 1.1 1 0 0 1 1 1 0 SDA1 Virul_fac_BrkB PF03631.15 gi|336254605|ref|YP_004597712.1| - 2.2e-45 155.3 25.1 2.7e-45 155.0 25.1 1.1 1 0 0 1 1 1 1 Virulence factor BrkB CENP-F_leu_zip PF10473.9 gi|336254605|ref|YP_004597712.1| - 4.6e-06 26.7 4.7 7.4e-06 26.0 4.7 1.2 1 0 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 ERM PF00769.19 gi|336254605|ref|YP_004597712.1| - 0.00013 21.8 8.0 0.0002 21.2 8.0 1.1 1 0 0 1 1 1 1 Ezrin/radixin/moesin family ZapB PF06005.12 gi|336254605|ref|YP_004597712.1| - 0.00016 22.0 7.1 0.00016 22.0 7.1 2.2 1 1 1 2 2 2 1 Cell division protein ZapB Filament PF00038.21 gi|336254605|ref|YP_004597712.1| - 0.00078 19.1 6.3 0.001 18.7 6.3 1.1 1 0 0 1 1 1 1 Intermediate filament protein bZIP_1 PF00170.21 gi|336254605|ref|YP_004597712.1| - 0.00094 19.2 5.7 0.0016 18.5 5.7 1.4 1 0 0 1 1 1 1 bZIP transcription factor YabA PF06156.13 gi|336254605|ref|YP_004597712.1| - 0.002 18.7 3.1 0.0041 17.7 2.8 1.7 1 1 1 2 2 2 1 Initiation control protein YabA Enkurin PF13864.6 gi|336254605|ref|YP_004597712.1| - 0.0052 17.2 0.9 0.0052 17.2 0.9 2.1 1 1 1 2 2 2 1 Calmodulin-binding ADIP PF11559.8 gi|336254605|ref|YP_004597712.1| - 0.016 15.3 8.6 0.023 14.8 8.6 1.2 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding Rootletin PF15035.6 gi|336254605|ref|YP_004597712.1| - 0.019 15.0 8.7 0.027 14.5 8.7 1.1 1 0 0 1 1 1 0 Ciliary rootlet component, centrosome cohesion TSC22 PF01166.18 gi|336254605|ref|YP_004597712.1| - 0.029 14.7 2.4 0.055 13.8 2.4 1.4 1 0 0 1 1 1 0 TSC-22/dip/bun family EzrA PF06160.12 gi|336254605|ref|YP_004597712.1| - 0.041 12.1 1.3 0.055 11.6 1.3 1.1 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA GAS PF13851.6 gi|336254605|ref|YP_004597712.1| - 0.086 12.2 7.9 0.25 10.7 7.9 1.6 1 1 0 1 1 1 0 Growth-arrest specific micro-tubule binding JIP_LZII PF16471.5 gi|336254605|ref|YP_004597712.1| - 0.093 12.9 0.4 0.093 12.9 0.4 2.3 1 1 1 2 2 2 0 JNK-interacting protein leucine zipper II FlaC_arch PF05377.11 gi|336254605|ref|YP_004597712.1| - 0.11 12.8 0.5 0.81 10.1 0.3 2.1 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) DUF2053 PF09767.9 gi|336254605|ref|YP_004597712.1| - 0.13 12.4 0.8 0.28 11.3 0.1 1.7 2 0 0 2 2 2 0 Predicted membrane protein (DUF2053) Cnn_1N PF07989.11 gi|336254605|ref|YP_004597712.1| - 0.16 12.2 6.3 0.59 10.3 5.0 2.0 1 1 1 2 2 2 0 Centrosomin N-terminal motif 1 KASH_CCD PF14662.6 gi|336254605|ref|YP_004597712.1| - 0.16 11.8 6.3 0.11 12.3 3.0 1.9 1 1 1 2 2 2 0 Coiled-coil region of CCDC155 or KASH DUF1664 PF07889.12 gi|336254605|ref|YP_004597712.1| - 0.17 12.0 0.4 0.33 11.0 0.4 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) Fungal_TACC PF12709.7 gi|336254605|ref|YP_004597712.1| - 0.22 12.0 3.1 2.8 8.4 0.6 2.2 2 0 0 2 2 2 0 Fungal Transforming acidic coiled-coil (TACC) proteins Perilipin PF03036.16 gi|336254605|ref|YP_004597712.1| - 0.24 10.4 1.0 0.34 9.9 1.0 1.1 1 0 0 1 1 1 0 Perilipin family CortBP2 PF09727.9 gi|336254605|ref|YP_004597712.1| - 0.86 9.5 12.9 2.5 7.9 12.9 1.6 1 1 0 1 1 1 0 Cortactin-binding protein-2 HALZ PF02183.18 gi|336254605|ref|YP_004597712.1| - 0.92 9.8 4.7 0.46 10.7 1.0 2.1 2 0 0 2 2 2 0 Homeobox associated leucine zipper UPF0242 PF06785.11 gi|336254605|ref|YP_004597712.1| - 1.1 9.3 7.4 4 7.5 7.5 2.0 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus TPR_MLP1_2 PF07926.12 gi|336254605|ref|YP_004597712.1| - 1.6 8.8 11.0 1 9.4 7.1 2.0 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein APG6_N PF17675.1 gi|336254605|ref|YP_004597712.1| - 1.8 9.1 17.2 1.4 9.4 14.2 1.9 1 1 1 2 2 2 0 Apg6 coiled-coil region CENP-H PF05837.12 gi|336254605|ref|YP_004597712.1| - 2.9 8.3 7.8 4.2 7.8 5.9 1.7 1 1 0 1 1 1 0 Centromere protein H (CENP-H) DivIC PF04977.15 gi|336254605|ref|YP_004597712.1| - 3.9 7.3 13.1 1.7 8.5 4.2 2.7 2 1 1 3 3 2 0 Septum formation initiator Cep57_CLD_2 PF14197.6 gi|336254605|ref|YP_004597712.1| - 5.8 7.1 16.2 8.4 6.6 5.5 2.5 1 1 0 2 2 2 0 Centrosome localisation domain of PPC89 PRKG1_interact PF15898.5 gi|336254605|ref|YP_004597712.1| - 6.9 7.6 11.3 10 7.1 2.0 2.2 1 1 1 2 2 2 0 cGMP-dependent protein kinase interacting domain Atg14 PF10186.9 gi|336254605|ref|YP_004597712.1| - 9.1 5.3 7.3 13 4.7 7.3 1.1 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 betaPIX_CC PF16523.5 gi|336254605|ref|YP_004597712.1| - 9.5 6.1 8.1 16 5.4 0.6 2.7 2 1 1 3 3 2 0 betaPIX coiled coil Ferritin PF00210.24 gi|336254606|ref|YP_004597713.1| - 1.2e-32 112.8 3.0 1.6e-32 112.4 3.0 1.1 1 0 0 1 1 1 1 Ferritin-like domain DUF2383 PF09537.10 gi|336254606|ref|YP_004597713.1| - 0.0068 16.7 0.5 3.2 8.2 0.0 2.7 2 1 1 3 3 3 2 Domain of unknown function (DUF2383) Macro PF01661.21 gi|336254608|ref|YP_004597715.1| - 4.6e-29 100.9 0.0 6.8e-29 100.3 0.0 1.3 1 0 0 1 1 1 1 Macro domain CytB6-F_Fe-S PF08802.10 gi|336254609|ref|YP_004597716.1| - 0.061 13.4 0.2 0.11 12.5 0.2 1.4 1 0 0 1 1 1 0 Cytochrome B6-F complex Fe-S subunit TAT_signal PF10518.9 gi|336254609|ref|YP_004597716.1| - 0.067 13.1 0.9 0.067 13.1 0.9 1.9 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence AIRS_C PF02769.22 gi|336254610|ref|YP_004597717.1| - 6e-22 78.4 0.2 1.3e-21 77.4 0.0 1.6 2 0 0 2 2 2 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|336254610|ref|YP_004597717.1| - 2.5e-13 50.5 0.8 4.8e-13 49.6 0.8 1.4 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain YdjM PF04307.14 gi|336254611|ref|YP_004597718.1| - 6e-06 25.7 20.0 4.3e-05 22.9 16.2 2.7 2 1 0 2 2 2 1 LexA-binding, inner membrane-associated putative hydrolase Acetyltransf_1 PF00583.25 gi|336254612|ref|YP_004597719.1| - 1.1e-12 48.2 0.0 1.4e-12 47.9 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|336254612|ref|YP_004597719.1| - 5e-09 36.5 0.0 7.9e-09 35.8 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|336254612|ref|YP_004597719.1| - 2.5e-07 31.4 0.0 3.5e-07 31.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|336254612|ref|YP_004597719.1| - 3.6e-06 26.9 0.0 1.2e-05 25.2 0.0 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|336254612|ref|YP_004597719.1| - 6.1e-06 26.1 0.0 1e-05 25.4 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|336254612|ref|YP_004597719.1| - 0.00034 20.7 0.0 0.00047 20.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_15 PF17013.5 gi|336254612|ref|YP_004597719.1| - 0.0035 16.9 0.0 0.0042 16.6 0.0 1.3 1 1 0 1 1 1 1 Putative acetyl-transferase Acetyltransf_CG PF14542.6 gi|336254612|ref|YP_004597719.1| - 0.0052 16.9 0.0 0.0096 16.0 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_4 PF13420.7 gi|336254612|ref|YP_004597719.1| - 0.0076 16.4 0.0 0.011 15.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Big_3_4 PF13754.6 gi|336254612|ref|YP_004597719.1| - 0.19 11.5 0.0 0.29 10.9 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function CDP-OH_P_transf PF01066.21 gi|336254613|ref|YP_004597720.1| - 1.7e-06 28.7 1.4 1.7e-06 28.7 1.4 2.5 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase Ketoacyl-synt_C PF02801.22 gi|336254613|ref|YP_004597720.1| - 0.16 12.0 0.0 0.24 11.4 0.0 1.3 1 0 0 1 1 1 0 Beta-ketoacyl synthase, C-terminal domain PHP_C PF13263.6 gi|336254614|ref|YP_004597721.1| - 2.1e-15 56.2 1.4 4.4e-15 55.2 1.4 1.6 1 0 0 1 1 1 1 PHP-associated PHP PF02811.19 gi|336254614|ref|YP_004597721.1| - 1e-07 32.4 0.0 1.9e-07 31.6 0.0 1.5 1 1 0 1 1 1 1 PHP domain Peptidase_M50 PF02163.22 gi|336254615|ref|YP_004597722.1| - 5e-06 26.0 15.8 0.0032 16.8 0.8 3.2 1 1 1 2 2 2 2 Peptidase family M50 DUF3021 PF11457.8 gi|336254615|ref|YP_004597722.1| - 0.93 9.8 6.6 0.87 9.9 5.5 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF3021) TraB PF01963.17 gi|336254616|ref|YP_004597723.1| - 3.6e-27 95.9 0.0 1.5e-16 61.1 0.0 2.1 2 0 0 2 2 2 2 TraB family RRM_4 PF10598.9 gi|336254616|ref|YP_004597723.1| - 0.031 14.6 0.5 0.086 13.2 0.5 1.7 1 0 0 1 1 1 0 RNA recognition motif of the spliceosomal PrP8 PAP2 PF01569.21 gi|336254616|ref|YP_004597723.1| - 0.6 9.9 0.0 0.6 9.9 0.0 3.1 3 1 0 3 3 3 0 PAP2 superfamily 4HBT PF03061.22 gi|336254617|ref|YP_004597724.1| - 2.9e-15 56.4 0.3 4.1e-15 55.9 0.3 1.2 1 0 0 1 1 1 1 Thioesterase superfamily Peptidase_S66 PF02016.15 gi|336254618|ref|YP_004597725.1| - 1e-25 90.2 0.0 1.4e-25 89.7 0.0 1.2 1 0 0 1 1 1 1 LD-carboxypeptidase N-terminal domain Peptidase_S66C PF17676.1 gi|336254618|ref|YP_004597725.1| - 3.4e-24 85.7 0.0 5.3e-24 85.1 0.0 1.3 1 0 0 1 1 1 1 LD-carboxypeptidase C-terminal domain Gly-zipper_YMGG PF13441.6 gi|336254619|ref|YP_004597726.1| - 3.2e-07 30.0 15.1 4.3e-07 29.6 15.1 1.2 1 0 0 1 1 1 1 YMGG-like Gly-zipper Rick_17kDa_Anti PF05433.15 gi|336254619|ref|YP_004597726.1| - 5.6e-06 26.1 15.0 8.1e-06 25.6 15.0 1.3 1 0 0 1 1 1 1 Glycine zipper 2TM domain Gly-zipper_Omp PF13488.6 gi|336254619|ref|YP_004597726.1| - 0.0012 18.8 33.9 0.011 15.7 6.1 2.0 1 1 1 2 2 2 2 Glycine zipper DUF456 PF04306.13 gi|336254619|ref|YP_004597726.1| - 0.0064 16.8 1.1 0.0067 16.7 1.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF456) DUF3482 PF11981.8 gi|336254619|ref|YP_004597726.1| - 0.066 12.6 7.5 0.075 12.4 7.5 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF3482) TraT PF05818.12 gi|336254619|ref|YP_004597726.1| - 0.095 12.4 3.6 0.1 12.3 3.6 1.1 1 0 0 1 1 1 0 Enterobacterial TraT complement resistance protein ATP-synt_E PF05680.12 gi|336254619|ref|YP_004597726.1| - 0.14 12.5 0.2 0.14 12.5 0.2 1.5 2 0 0 2 2 2 0 ATP synthase E chain Gly-zipper_OmpA PF13436.6 gi|336254619|ref|YP_004597726.1| - 1.4 8.8 20.4 1.5 8.6 19.1 1.7 1 1 0 1 1 1 0 Glycine-zipper domain Bacteriocin_IIc PF10439.9 gi|336254619|ref|YP_004597726.1| - 1.7 8.8 11.2 2.6 8.2 11.2 1.3 1 0 0 1 1 1 0 Bacteriocin class II with double-glycine leader peptide Hydrolase_6 PF13344.6 gi|336254620|ref|YP_004597727.1| - 1.3e-24 86.2 0.0 4.5e-24 84.5 0.0 1.9 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|336254620|ref|YP_004597727.1| - 2.9e-21 75.3 0.7 9.3e-21 73.7 0.5 2.0 2 0 0 2 2 2 1 HAD-hyrolase-like Hydrolase PF00702.26 gi|336254620|ref|YP_004597727.1| - 1.6e-07 31.9 1.3 1.8e-06 28.4 1.3 2.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|336254620|ref|YP_004597727.1| - 5.7e-05 23.3 0.1 0.00051 20.2 0.0 2.2 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase PGP_phosphatase PF09419.10 gi|336254620|ref|YP_004597727.1| - 0.0073 15.9 0.0 0.012 15.2 0.0 1.3 1 0 0 1 1 1 1 Mitochondrial PGP phosphatase Hydrolase_3 PF08282.12 gi|336254620|ref|YP_004597727.1| - 0.027 14.2 0.0 0.059 13.1 0.0 1.5 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase SHOCT PF09851.9 gi|336254621|ref|YP_004597728.1| - 9e-09 34.8 0.3 1.5e-08 34.1 0.3 1.4 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.11 gi|336254621|ref|YP_004597728.1| - 0.0014 18.7 7.5 0.0078 16.3 7.3 2.1 1 1 0 1 1 1 1 Domain of unknown function (DUF1707) Ric8 PF10165.9 gi|336254621|ref|YP_004597728.1| - 0.03 13.4 0.0 0.036 13.1 0.0 1.0 1 0 0 1 1 1 0 Guanine nucleotide exchange factor synembryn GvpG PF05120.12 gi|336254621|ref|YP_004597728.1| - 0.058 13.4 1.5 0.097 12.7 1.4 1.5 1 1 0 1 1 1 0 Gas vesicle protein G Peptidase_M48 PF01435.18 gi|336254621|ref|YP_004597728.1| - 0.11 12.3 0.1 0.14 11.9 0.1 1.2 1 0 0 1 1 1 0 Peptidase family M48 tRNA_anti-like PF12869.7 gi|336254621|ref|YP_004597728.1| - 0.16 11.6 0.0 0.23 11.1 0.0 1.2 1 0 0 1 1 1 0 tRNA_anti-like Peptidase_C57 PF03290.13 gi|336254622|ref|YP_004597729.1| - 0.14 10.8 0.0 0.19 10.4 0.0 1.1 1 0 0 1 1 1 0 Vaccinia virus I7 processing peptidase Zn-ribbon_8 PF09723.10 gi|336254623|ref|YP_004597730.1| - 0.005 16.9 5.1 0.011 15.9 5.1 1.5 1 1 0 1 1 1 1 Zinc ribbon domain HypA PF01155.19 gi|336254623|ref|YP_004597730.1| - 0.0059 16.6 0.8 0.0059 16.6 0.8 1.0 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TFIIS_C PF01096.18 gi|336254623|ref|YP_004597730.1| - 0.014 15.2 1.6 0.13 12.1 0.1 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) UPF0547 PF10571.9 gi|336254623|ref|YP_004597730.1| - 0.024 14.7 3.9 2.1 8.5 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 A2L_zn_ribbon PF08792.10 gi|336254623|ref|YP_004597730.1| - 0.088 12.5 4.4 2.8 7.8 0.5 2.1 1 1 1 2 2 2 0 A2L zinc ribbon domain NRDD PF13597.6 gi|336254623|ref|YP_004597730.1| - 0.23 10.2 0.8 0.21 10.4 0.8 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase Rubredoxin_2 PF18073.1 gi|336254623|ref|YP_004597730.1| - 0.53 10.1 5.9 5.3 6.8 5.9 2.0 1 1 0 1 1 1 0 Rubredoxin metal binding domain zf-Di19 PF05605.12 gi|336254624|ref|YP_004597731.1| - 0.021 15.1 0.1 0.029 14.7 0.1 1.3 1 0 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding Zn_Tnp_IS1595 PF12760.7 gi|336254624|ref|YP_004597731.1| - 0.074 13.0 0.3 0.12 12.3 0.1 1.5 2 0 0 2 2 2 0 Transposase zinc-ribbon domain MFS_1 PF07690.16 gi|336254625|ref|YP_004597732.1| - 8.5e-38 130.2 58.2 2.9e-34 118.6 46.3 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily LacY_symp PF01306.19 gi|336254625|ref|YP_004597732.1| - 1.2e-06 27.5 12.6 0.0012 17.7 0.4 3.5 2 1 1 3 3 3 3 LacY proton/sugar symporter MFS_2 PF13347.6 gi|336254625|ref|YP_004597732.1| - 0.83 8.1 32.1 1.7 7.1 26.1 2.4 1 1 1 2 2 2 0 MFS/sugar transport protein PEPCK_ATP PF01293.20 gi|336254626|ref|YP_004597733.1| - 1.3e-59 202.1 0.0 2.6e-59 201.1 0.0 1.5 1 1 0 1 1 1 1 Phosphoenolpyruvate carboxykinase PBP1_TM PF14812.6 gi|336254627|ref|YP_004597734.1| - 0.044 14.2 0.3 0.049 14.0 0.3 1.1 1 0 0 1 1 1 0 Transmembrane domain of transglycosylase PBP1 at N-terminal DUF2505 PF10698.9 gi|336254627|ref|YP_004597734.1| - 0.049 13.7 0.1 0.052 13.6 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2505) DCAF15_WD40 PF14939.6 gi|336254627|ref|YP_004597734.1| - 0.18 11.5 0.0 0.2 11.3 0.0 1.0 1 0 0 1 1 1 0 DDB1-and CUL4-substrate receptor 15, WD repeat CutA1 PF03091.15 gi|336254628|ref|YP_004597735.1| - 3.4e-29 100.6 0.0 3.8e-29 100.5 0.0 1.0 1 0 0 1 1 1 1 CutA1 divalent ion tolerance protein Ribosomal_L11 PF00298.19 gi|336254629|ref|YP_004597736.1| - 1.8e-21 76.4 0.0 2.7e-21 75.8 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain Ribosomal_L11_N PF03946.14 gi|336254629|ref|YP_004597736.1| - 3.9e-17 61.9 0.1 6e-17 61.2 0.1 1.3 1 0 0 1 1 1 1 Ribosomal protein L11, N-terminal domain Ribosomal_L1 PF00687.21 gi|336254631|ref|YP_004597738.1| - 9.6e-41 139.8 0.0 1.2e-40 139.5 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family Ribosomal_L10 PF00466.20 gi|336254632|ref|YP_004597739.1| - 1.3e-23 83.0 0.0 2.3e-23 82.2 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein L10 RL10P_insert PF17777.1 gi|336254632|ref|YP_004597739.1| - 1.9e-16 59.8 0.0 3.8e-16 58.8 0.0 1.5 1 0 0 1 1 1 1 Insertion domain in 60S ribosomal protein L10P Cwf_Cwc_15 PF04889.12 gi|336254632|ref|YP_004597739.1| - 0.58 9.9 9.6 0.86 9.3 9.6 1.3 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein RNA_pol_3_Rpc31 PF11705.8 gi|336254632|ref|YP_004597739.1| - 0.69 10.1 13.0 1.3 9.3 13.0 1.5 1 0 0 1 1 1 0 DNA-directed RNA polymerase III subunit Rpc31 PPP4R2 PF09184.11 gi|336254632|ref|YP_004597739.1| - 1.5 8.4 5.4 2.2 7.8 5.4 1.2 1 0 0 1 1 1 0 PPP4R2 Ribosomal_60s PF00428.19 gi|336254633|ref|YP_004597740.1| - 2.5e-16 60.0 17.1 3.3e-16 59.7 17.1 1.1 1 0 0 1 1 1 1 60s Acidic ribosomal protein RRN3 PF05327.11 gi|336254633|ref|YP_004597740.1| - 0.0076 14.8 2.6 0.0089 14.6 2.6 1.0 1 0 0 1 1 1 1 RNA polymerase I specific transcription initiation factor RRN3 Cwf_Cwc_15 PF04889.12 gi|336254633|ref|YP_004597740.1| - 2.4 7.8 6.9 3 7.5 6.9 1.2 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein NOA36 PF06524.12 gi|336254633|ref|YP_004597740.1| - 4 6.7 8.6 4.6 6.5 8.6 1.1 1 0 0 1 1 1 0 NOA36 protein Sigma70_ner PF04546.13 gi|336254633|ref|YP_004597740.1| - 5.7 6.8 9.5 7.3 6.4 9.5 1.2 1 0 0 1 1 1 0 Sigma-70, non-essential region DUF2457 PF10446.9 gi|336254633|ref|YP_004597740.1| - 6.5 5.8 9.4 6.8 5.7 9.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2457) Trypan_PARP PF05887.11 gi|336254634|ref|YP_004597741.1| - 0.032 14.2 4.9 0.065 13.2 4.9 1.5 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) SLAC1 PF03595.17 gi|336254634|ref|YP_004597741.1| - 0.063 12.5 11.1 0.15 11.3 11.2 1.7 1 1 0 1 1 1 0 Voltage-dependent anion channel DUF2070 PF09843.9 gi|336254634|ref|YP_004597741.1| - 0.14 10.4 3.3 0.19 10.0 3.3 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) BCD PF15461.6 gi|336254635|ref|YP_004597742.1| - 5.3e-83 278.6 19.6 7e-83 278.2 19.6 1.2 1 0 0 1 1 1 1 Beta-carotene 15,15'-dioxygenase Patatin PF01734.22 gi|336254635|ref|YP_004597742.1| - 0.002 18.3 1.7 0.0032 17.7 1.7 1.5 1 0 0 1 1 1 1 Patatin-like phospholipase TctA PF01970.16 gi|336254636|ref|YP_004597743.1| - 1.7e-64 218.1 45.6 2e-64 217.8 45.6 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family BtpA PF03437.15 gi|336254637|ref|YP_004597744.1| - 3.3e-83 279.0 4.7 3.8e-83 278.8 4.7 1.0 1 0 0 1 1 1 1 BtpA family 4HFCP_synth PF04476.13 gi|336254637|ref|YP_004597744.1| - 0.0026 17.5 0.6 0.018 14.8 0.0 2.0 1 1 0 2 2 2 1 4-HFC-P synthase TGT PF01702.18 gi|336254637|ref|YP_004597744.1| - 0.0077 15.4 0.1 0.017 14.3 0.1 1.4 1 1 0 1 1 1 1 Queuine tRNA-ribosyltransferase PcrB PF01884.17 gi|336254637|ref|YP_004597744.1| - 0.012 15.1 5.6 0.088 12.2 1.3 2.6 2 1 1 3 3 3 0 PcrB family Trp_syntA PF00290.20 gi|336254637|ref|YP_004597744.1| - 0.023 13.6 1.2 0.037 12.9 1.2 1.4 1 0 0 1 1 1 0 Tryptophan synthase alpha chain Asparaginase_C PF17763.1 gi|336254637|ref|YP_004597744.1| - 0.12 12.6 3.3 1.2 9.4 0.3 2.8 2 2 1 3 3 3 0 Glutaminase/Asparaginase C-terminal domain Oxidored_FMN PF00724.20 gi|336254638|ref|YP_004597745.1| - 7.4e-65 219.5 0.0 9.9e-65 219.0 0.0 1.2 1 0 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family Dus PF01207.17 gi|336254638|ref|YP_004597745.1| - 0.077 12.1 0.0 0.14 11.2 0.0 1.5 1 1 0 1 1 1 0 Dihydrouridine synthase (Dus) AhpC-TSA PF00578.21 gi|336254639|ref|YP_004597746.1| - 1.2e-16 60.8 0.0 1.5e-16 60.4 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|336254639|ref|YP_004597746.1| - 1.5e-13 50.7 0.0 1.8e-13 50.4 0.0 1.1 1 0 0 1 1 1 1 Redoxin TatD_DNase PF01026.21 gi|336254639|ref|YP_004597746.1| - 0.0034 16.8 0.0 0.0044 16.4 0.0 1.1 1 0 0 1 1 1 1 TatD related DNase TraF PF13728.6 gi|336254639|ref|YP_004597746.1| - 0.0047 16.8 0.0 0.025 14.4 0.0 1.9 1 1 0 1 1 1 1 F plasmid transfer operon protein Thioredoxin_2 PF13098.6 gi|336254639|ref|YP_004597746.1| - 0.0079 16.6 0.0 0.013 15.9 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.6 gi|336254639|ref|YP_004597746.1| - 0.026 14.8 0.0 0.038 14.3 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin-like T4_deiodinase PF00837.17 gi|336254639|ref|YP_004597746.1| - 0.064 12.5 0.0 0.083 12.2 0.0 1.2 1 0 0 1 1 1 0 Iodothyronine deiodinase SeqA_N PF17206.3 gi|336254640|ref|YP_004597747.1| - 0.39 10.1 0.2 0.39 10.1 0.2 2.4 3 0 0 3 3 3 0 SeqA protein N-terminal domain SAPS PF04499.15 gi|336254640|ref|YP_004597747.1| - 0.64 8.7 7.5 0.74 8.5 7.5 1.1 1 0 0 1 1 1 0 SIT4 phosphatase-associated protein DUF4407 PF14362.6 gi|336254640|ref|YP_004597747.1| - 0.66 9.3 3.7 0.83 8.9 3.7 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) RRN3 PF05327.11 gi|336254640|ref|YP_004597747.1| - 2.2 6.7 11.4 2.3 6.7 11.4 1.1 1 0 0 1 1 1 0 RNA polymerase I specific transcription initiation factor RRN3 Nop14 PF04147.12 gi|336254640|ref|YP_004597747.1| - 2.8 6.0 19.0 3 6.0 19.0 1.0 1 0 0 1 1 1 0 Nop14-like family AsnC_trans_reg PF01037.21 gi|336254641|ref|YP_004597748.1| - 1.4e-12 47.4 0.7 2.5e-12 46.6 0.1 1.7 2 0 0 2 2 2 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|336254641|ref|YP_004597748.1| - 1.2e-06 28.0 0.1 3.9e-06 26.3 0.1 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.6 gi|336254641|ref|YP_004597748.1| - 1.5e-05 25.3 0.1 0.00049 20.5 0.2 2.4 2 1 0 2 2 2 1 Winged helix DNA-binding domain HTH_AsnC-type PF13404.6 gi|336254641|ref|YP_004597748.1| - 3.9e-05 23.4 0.9 7.8e-05 22.4 0.3 1.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.7 gi|336254641|ref|YP_004597748.1| - 0.0021 17.9 1.1 0.0027 17.6 0.1 1.7 2 0 0 2 2 2 1 MarR family FeoC PF09012.10 gi|336254641|ref|YP_004597748.1| - 0.014 15.4 0.0 0.025 14.7 0.0 1.3 1 0 0 1 1 1 0 FeoC like transcriptional regulator HTH_Crp_2 PF13545.6 gi|336254641|ref|YP_004597748.1| - 0.015 15.3 0.1 0.033 14.2 0.1 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain DprA_WH PF17782.1 gi|336254641|ref|YP_004597748.1| - 0.03 14.4 0.4 0.053 13.7 0.4 1.3 1 0 0 1 1 1 0 DprA winged helix domain TrmB PF01978.19 gi|336254641|ref|YP_004597748.1| - 0.037 13.9 0.4 0.066 13.1 0.4 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|336254641|ref|YP_004597748.1| - 0.057 13.8 0.0 0.13 12.6 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator She9_MDM33 PF05546.11 gi|336254641|ref|YP_004597748.1| - 0.089 12.6 0.3 0.29 10.9 0.1 2.0 1 1 1 2 2 2 0 She9 / Mdm33 family HTH_54 PF18607.1 gi|336254641|ref|YP_004597748.1| - 0.13 12.3 0.1 0.78 9.8 0.0 2.0 2 0 0 2 2 2 0 ParA helix turn helix domain Aminotran_1_2 PF00155.21 gi|336254642|ref|YP_004597749.1| - 7.2e-69 232.7 0.0 8.2e-69 232.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|336254642|ref|YP_004597749.1| - 5.5e-07 29.1 0.0 1.3e-06 27.9 0.0 1.5 2 0 0 2 2 2 1 Beta-eliminating lyase Aminotran_5 PF00266.19 gi|336254642|ref|YP_004597749.1| - 4.2e-05 22.7 0.0 7.5e-05 21.9 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|336254642|ref|YP_004597749.1| - 0.017 14.4 0.0 0.034 13.5 0.0 1.4 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family OKR_DC_1 PF01276.20 gi|336254642|ref|YP_004597749.1| - 0.076 11.7 0.0 0.11 11.2 0.0 1.1 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain Acetyltransf_17 PF17668.1 gi|336254643|ref|YP_004597750.1| - 1.2e-23 84.1 0.4 3.3e-23 82.7 0.4 1.8 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain SCP2_2 PF13530.6 gi|336254643|ref|YP_004597750.1| - 1.9e-23 82.9 0.0 2.9e-23 82.2 0.0 1.3 1 0 0 1 1 1 1 Sterol carrier protein domain Acetyltransf_9 PF13527.7 gi|336254643|ref|YP_004597750.1| - 3.9e-22 78.7 0.0 7.8e-22 77.7 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|336254643|ref|YP_004597750.1| - 0.0052 17.0 0.0 2.2 8.5 0.0 2.4 2 0 0 2 2 2 2 Acetyltransferase (GNAT) family DJ-1_PfpI PF01965.24 gi|336254644|ref|YP_004597751.1| - 2.6e-47 160.7 0.5 2.9e-47 160.5 0.5 1.0 1 0 0 1 1 1 1 DJ-1/PfpI family Catalase_C PF18011.1 gi|336254644|ref|YP_004597751.1| - 4.2e-06 26.5 0.5 2.3e-05 24.1 0.5 1.9 1 1 0 1 1 1 1 C-terminal domain found in long catalases ThiJ_like PF17124.5 gi|336254644|ref|YP_004597751.1| - 0.021 14.5 0.0 0.036 13.7 0.0 1.4 1 1 0 1 1 1 0 ThiJ/PfpI family-like GATase_3 PF07685.14 gi|336254644|ref|YP_004597751.1| - 0.023 14.3 0.0 0.033 13.8 0.0 1.3 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain PAS_4 PF08448.10 gi|336254645|ref|YP_004597752.1| - 3e-25 88.6 9.5 2e-14 53.8 0.2 3.2 3 0 0 3 3 3 2 PAS fold PAS PF00989.25 gi|336254645|ref|YP_004597752.1| - 1e-17 64.1 0.2 3.4e-09 36.7 0.1 2.7 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|336254645|ref|YP_004597752.1| - 3.5e-15 56.1 0.0 5.5e-09 36.2 0.1 2.7 2 0 0 2 2 2 2 PAS domain GAF_2 PF13185.6 gi|336254645|ref|YP_004597752.1| - 6.3e-13 49.2 1.3 1.1e-12 48.4 0.3 2.0 2 0 0 2 2 2 1 GAF domain PAS_8 PF13188.7 gi|336254645|ref|YP_004597752.1| - 2.6e-12 46.4 0.5 5e-07 29.6 0.2 2.9 2 0 0 2 2 2 2 PAS domain GAF_3 PF13492.6 gi|336254645|ref|YP_004597752.1| - 5.8e-06 26.7 0.0 1.5e-05 25.3 0.0 1.7 1 0 0 1 1 1 1 GAF domain HATPase_c PF02518.26 gi|336254645|ref|YP_004597752.1| - 0.00022 21.7 0.0 0.00046 20.7 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_7 PF12860.7 gi|336254645|ref|YP_004597752.1| - 0.066 13.4 3.6 1.7 8.8 0.1 3.8 3 1 0 3 3 3 0 PAS fold HEXIM PF15313.6 gi|336254645|ref|YP_004597752.1| - 0.07 13.3 0.5 0.26 11.5 0.0 2.1 2 0 0 2 2 2 0 Hexamethylene bis-acetamide-inducible protein HalX PF08663.10 gi|336254646|ref|YP_004597753.1| - 1.2e-16 60.7 8.7 2.8e-16 59.6 8.7 1.6 1 0 0 1 1 1 1 HalX domain AIRS_C PF02769.22 gi|336254647|ref|YP_004597754.1| - 4.3e-41 140.6 9.6 1.8e-32 112.7 1.6 2.6 3 0 0 3 3 3 2 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|336254647|ref|YP_004597754.1| - 2.4e-39 133.9 9.0 1.5e-22 80.1 0.1 3.0 3 0 0 3 3 3 2 AIR synthase related protein, N-terminal domain FGAR-AT_linker PF18072.1 gi|336254647|ref|YP_004597754.1| - 4.3e-07 30.4 0.1 1.1e-06 29.0 0.1 1.8 1 0 0 1 1 1 1 Formylglycinamide ribonucleotide amidotransferase linker domain GHMP_kinases_C PF08544.13 gi|336254647|ref|YP_004597754.1| - 0.35 11.3 2.2 1.3 9.4 0.0 2.5 2 0 0 2 2 2 0 GHMP kinases C terminal DUF2975 PF11188.8 gi|336254648|ref|YP_004597755.1| - 0.008 16.1 4.8 0.008 16.1 4.8 1.9 1 1 1 2 2 2 1 Protein of unknown function (DUF2975) BofA PF07441.11 gi|336254648|ref|YP_004597755.1| - 0.014 15.5 0.8 0.014 15.5 0.8 2.3 1 1 1 2 2 2 0 SigmaK-factor processing regulatory protein BofA MFS_1 PF07690.16 gi|336254649|ref|YP_004597756.1| - 2.9e-14 52.8 55.0 2.8e-08 33.1 29.5 2.4 1 1 2 3 3 3 3 Major Facilitator Superfamily SH3_12 PF18129.1 gi|336254649|ref|YP_004597756.1| - 0.16 12.1 0.4 7.8 6.7 0.1 2.4 2 0 0 2 2 2 0 Xrn1 SH3-like domain HTH_20 PF12840.7 gi|336254650|ref|YP_004597757.1| - 9.1e-12 44.9 0.9 1.8e-11 43.9 0.9 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|336254650|ref|YP_004597757.1| - 1.1e-08 34.8 0.4 2.1e-08 33.9 0.3 1.6 1 1 1 2 2 2 1 Bacterial regulatory protein, arsR family GntR PF00392.21 gi|336254650|ref|YP_004597757.1| - 0.0013 18.3 0.1 0.0029 17.2 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family DUF4423 PF14394.6 gi|336254650|ref|YP_004597757.1| - 0.0019 17.9 0.0 0.0035 17.1 0.0 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4423) TrmB PF01978.19 gi|336254650|ref|YP_004597757.1| - 0.004 17.0 0.0 0.0086 15.9 0.0 1.6 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|336254650|ref|YP_004597757.1| - 0.0074 16.2 0.3 0.023 14.6 0.3 1.9 1 1 0 1 1 1 1 MarR family RP-C PF03428.13 gi|336254650|ref|YP_004597757.1| - 0.013 15.2 0.9 0.052 13.2 0.7 2.0 1 1 0 1 1 1 0 Replication protein C N-terminal domain Nnf1 PF03980.14 gi|336254650|ref|YP_004597757.1| - 1.1 9.7 5.0 4 7.9 3.2 2.3 1 1 1 2 2 2 0 Nnf1 LMWPc PF01451.21 gi|336254651|ref|YP_004597758.1| - 1.2e-28 100.3 0.1 1.6e-28 99.8 0.1 1.2 1 0 0 1 1 1 1 Low molecular weight phosphotyrosine protein phosphatase DUF2526 PF10735.9 gi|336254651|ref|YP_004597758.1| - 0.17 12.1 0.2 0.17 12.1 0.2 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF2526) PHP_C PF13263.6 gi|336254652|ref|YP_004597759.1| - 1.2e-22 79.4 1.3 2.6e-22 78.3 1.3 1.6 1 0 0 1 1 1 1 PHP-associated PHP PF02811.19 gi|336254652|ref|YP_004597759.1| - 2.3e-08 34.5 0.1 3.2e-08 34.0 0.1 1.5 1 1 0 1 1 1 1 PHP domain Glyco_tranf_2_4 PF13704.6 gi|336254652|ref|YP_004597759.1| - 0.14 12.7 0.1 0.33 11.5 0.1 1.9 1 1 0 1 1 1 0 Glycosyl transferase family 2 Asn_synthase PF00733.21 gi|336254653|ref|YP_004597760.1| - 1.1e-33 117.4 6.8 1.1e-21 77.9 1.4 2.1 1 1 1 2 2 2 2 Asparagine synthase tRNA_Me_trans PF03054.16 gi|336254653|ref|YP_004597760.1| - 0.037 12.8 0.0 0.051 12.4 0.0 1.2 1 0 0 1 1 1 0 tRNA methyl transferase NAD_synthase PF02540.17 gi|336254653|ref|YP_004597760.1| - 0.059 12.5 0.0 0.12 11.5 0.0 1.5 1 0 0 1 1 1 0 NAD synthase SIMPL PF04402.14 gi|336254653|ref|YP_004597760.1| - 0.32 11.4 1.7 1.1 9.6 1.6 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF541) Cupin_2 PF07883.11 gi|336254654|ref|YP_004597761.1| - 5.2e-10 38.9 2.3 7.8e-10 38.3 2.3 1.2 1 0 0 1 1 1 1 Cupin domain PCO_ADO PF07847.12 gi|336254654|ref|YP_004597761.1| - 0.0093 15.4 0.0 0.0094 15.4 0.0 1.1 1 0 0 1 1 1 1 PCO_ADO Cupin_1 PF00190.22 gi|336254654|ref|YP_004597761.1| - 0.012 15.3 0.0 0.012 15.2 0.0 1.2 1 0 0 1 1 1 0 Cupin DMSP_lyase PF16867.5 gi|336254654|ref|YP_004597761.1| - 0.016 14.9 0.1 0.02 14.6 0.1 1.1 1 0 0 1 1 1 0 Dimethlysulfonioproprionate lyase Cupin_3 PF05899.12 gi|336254654|ref|YP_004597761.1| - 0.03 14.0 0.2 0.047 13.4 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF861) ParA PF10609.9 gi|336254655|ref|YP_004597762.1| - 7e-90 300.8 0.1 8.8e-90 300.4 0.1 1.1 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|336254655|ref|YP_004597762.1| - 1.1e-12 48.1 0.0 1.9e-12 47.3 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|336254655|ref|YP_004597762.1| - 3.2e-11 43.5 0.2 3.9e-08 33.4 0.3 2.2 2 0 0 2 2 2 2 AAA domain ArsA_ATPase PF02374.15 gi|336254655|ref|YP_004597762.1| - 7.4e-07 28.6 2.6 0.00029 20.1 0.7 2.9 2 1 1 3 3 3 2 Anion-transporting ATPase FeS_assembly_P PF01883.19 gi|336254655|ref|YP_004597762.1| - 1.7e-06 28.1 0.3 8e-06 25.9 0.1 2.1 2 0 0 2 2 2 1 Iron-sulfur cluster assembly protein MipZ PF09140.11 gi|336254655|ref|YP_004597762.1| - 0.00012 21.5 0.3 0.00022 20.6 0.2 1.5 2 0 0 2 2 2 1 ATPase MipZ AAA_26 PF13500.6 gi|336254655|ref|YP_004597762.1| - 0.00056 19.8 0.1 0.68 9.7 0.0 2.3 2 0 0 2 2 2 2 AAA domain VirC1 PF07015.11 gi|336254655|ref|YP_004597762.1| - 0.0016 17.8 0.0 0.0031 16.9 0.0 1.4 1 0 0 1 1 1 1 VirC1 protein CBP_BcsQ PF06564.12 gi|336254655|ref|YP_004597762.1| - 0.0079 15.7 0.4 0.6 9.5 0.8 2.1 2 0 0 2 2 2 1 Cellulose biosynthesis protein BcsQ SRP54 PF00448.22 gi|336254655|ref|YP_004597762.1| - 0.032 13.9 0.2 0.051 13.2 0.2 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Fer4_NifH PF00142.18 gi|336254655|ref|YP_004597762.1| - 0.034 13.6 0.1 0.088 12.2 0.2 1.6 2 0 0 2 2 2 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family DUF1490 PF07371.12 gi|336254655|ref|YP_004597762.1| - 0.049 13.7 0.8 0.15 12.2 0.3 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1490) NB-ARC PF00931.22 gi|336254655|ref|YP_004597762.1| - 0.087 12.0 0.1 0.23 10.6 0.1 1.6 2 0 0 2 2 2 0 NB-ARC domain APS_kinase PF01583.20 gi|336254655|ref|YP_004597762.1| - 0.097 12.6 0.0 0.18 11.7 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase NTPase_1 PF03266.15 gi|336254655|ref|YP_004597762.1| - 0.15 11.9 0.2 0.37 10.7 0.2 1.6 1 0 0 1 1 1 0 NTPase Ubie_methyltran PF01209.18 gi|336254655|ref|YP_004597762.1| - 0.16 11.3 0.0 0.27 10.5 0.0 1.3 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family Bax1-I PF01027.20 gi|336254656|ref|YP_004597763.1| - 0.07 12.9 7.0 0.083 12.7 7.0 1.1 1 0 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 DUF997 PF06196.12 gi|336254656|ref|YP_004597763.1| - 0.9 9.6 6.2 0.17 11.9 1.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF997) Bax1-I PF01027.20 gi|336254657|ref|YP_004597764.1| - 0.032 14.1 9.4 0.037 13.9 9.4 1.1 1 0 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 DUF996 PF06195.13 gi|336254657|ref|YP_004597764.1| - 0.081 13.2 5.1 0.091 13.0 5.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF996) Lig_chan PF00060.26 gi|336254657|ref|YP_004597764.1| - 3.3 7.5 5.1 2.9 7.7 0.2 2.1 2 0 0 2 2 2 0 Ligand-gated ion channel Ost5 PF05251.12 gi|336254657|ref|YP_004597764.1| - 8.5 6.7 10.2 0.16 12.2 3.2 1.7 2 0 0 2 2 2 0 Oligosaccharyltransferase subunit 5 NrfD PF03916.14 gi|336254658|ref|YP_004597765.1| - 3.5e-19 69.6 17.7 3.5e-19 69.6 17.7 1.7 1 1 1 2 2 2 2 Polysulphide reductase, NrfD Ferredoxin_N PF16947.5 gi|336254659|ref|YP_004597766.1| - 1.8e-36 124.0 6.4 1.8e-36 124.0 6.4 2.7 2 0 0 2 2 2 1 N-terminal region of 4Fe-4S ferredoxin iron-sulfur binding Fer4_7 PF12838.7 gi|336254659|ref|YP_004597766.1| - 3.9e-14 53.0 23.0 1.1e-05 25.9 1.6 4.2 3 1 1 4 4 4 4 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|336254659|ref|YP_004597766.1| - 1.3e-12 47.7 17.6 3.2e-08 33.5 0.3 3.6 2 2 1 3 3 3 3 4Fe-4S dicluster domain Fer4_11 PF13247.6 gi|336254659|ref|YP_004597766.1| - 2.5e-11 43.6 6.0 2.5e-11 43.6 6.0 2.9 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4 PF00037.27 gi|336254659|ref|YP_004597766.1| - 1.7e-07 30.7 34.1 0.00013 21.7 3.5 5.0 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_9 PF13187.6 gi|336254659|ref|YP_004597766.1| - 6e-07 29.5 26.7 0.00054 20.1 8.3 3.7 2 2 3 5 5 5 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|336254659|ref|YP_004597766.1| - 1.1e-06 28.5 37.0 0.0015 18.5 2.9 4.8 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_2 PF12797.7 gi|336254659|ref|YP_004597766.1| - 1.2e-05 25.1 10.1 0.00034 20.5 1.9 4.6 4 1 0 4 4 4 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|336254659|ref|YP_004597766.1| - 0.00024 21.5 23.8 0.053 14.0 8.4 3.5 2 2 1 3 3 3 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|336254659|ref|YP_004597766.1| - 0.0012 19.7 40.7 0.17 12.9 2.2 4.3 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_16 PF13484.6 gi|336254659|ref|YP_004597766.1| - 0.0062 17.5 25.9 1 10.4 0.0 4.8 3 1 0 4 4 4 2 4Fe-4S double cluster binding domain Fer4_4 PF12800.7 gi|336254659|ref|YP_004597766.1| - 0.019 15.4 30.3 0.16 12.6 3.3 4.4 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_21 PF14697.6 gi|336254659|ref|YP_004597766.1| - 0.022 14.9 21.9 0.33 11.1 8.6 3.7 3 0 0 3 3 3 0 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|336254659|ref|YP_004597766.1| - 0.024 15.2 26.1 0.84 10.2 7.5 4.1 1 1 2 3 3 3 0 4Fe-4S dicluster domain SHOCT PF09851.9 gi|336254659|ref|YP_004597766.1| - 0.094 12.5 0.7 1.3 8.8 0.1 3.0 2 0 0 2 2 2 0 Short C-terminal domain Fer4_15 PF13459.6 gi|336254659|ref|YP_004597766.1| - 4.9 8.0 22.1 0.38 11.5 0.4 4.7 5 1 0 5 5 4 0 4Fe-4S single cluster domain Cupin_2 PF07883.11 gi|336254660|ref|YP_004597767.1| - 1.7e-08 34.0 0.2 2.3e-08 33.6 0.2 1.3 1 0 0 1 1 1 1 Cupin domain Pirin_C_2 PF17954.1 gi|336254660|ref|YP_004597767.1| - 0.023 14.9 0.0 0.032 14.4 0.0 1.2 1 0 0 1 1 1 0 Quercetinase C-terminal cupin domain Cupin_3 PF05899.12 gi|336254660|ref|YP_004597767.1| - 0.026 14.2 0.0 0.06 13.0 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF861) DUF2917 PF11142.8 gi|336254660|ref|YP_004597767.1| - 0.028 13.8 0.0 0.05 13.0 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2917) CENP-C_C PF11699.8 gi|336254660|ref|YP_004597767.1| - 0.045 14.0 0.0 0.063 13.5 0.0 1.2 1 0 0 1 1 1 0 Mif2/CENP-C like HutD PF05962.11 gi|336254660|ref|YP_004597767.1| - 0.095 12.7 0.0 0.11 12.4 0.0 1.2 1 0 0 1 1 1 0 HutD Pirin_C PF05726.13 gi|336254660|ref|YP_004597767.1| - 0.12 12.7 0.0 0.17 12.3 0.0 1.2 1 0 0 1 1 1 0 Pirin C-terminal cupin domain HTH_10 PF04967.12 gi|336254661|ref|YP_004597768.1| - 3.1e-19 68.5 0.4 7.6e-19 67.3 0.0 1.8 2 0 0 2 2 2 1 HTH DNA binding domain HTH_Tnp_1_2 PF13022.6 gi|336254661|ref|YP_004597768.1| - 0.00016 21.8 0.0 0.085 13.0 0.1 2.2 2 0 0 2 2 2 2 Helix-turn-helix of insertion element transposase BAT PF15915.5 gi|336254661|ref|YP_004597768.1| - 0.0014 18.5 0.8 0.0034 17.3 0.2 1.9 1 1 0 2 2 2 1 GAF and HTH_10 associated domain PuR_N PF09182.10 gi|336254661|ref|YP_004597768.1| - 0.005 16.7 0.0 0.011 15.6 0.0 1.6 1 0 0 1 1 1 1 Bacterial purine repressor, N-terminal NYD-SP28 PF14772.6 gi|336254661|ref|YP_004597768.1| - 0.0061 16.6 0.1 0.013 15.6 0.1 1.5 1 1 0 1 1 1 1 Sperm tail HTH_IclR PF09339.10 gi|336254661|ref|YP_004597768.1| - 0.0082 15.9 0.3 0.069 13.0 0.0 2.3 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|336254661|ref|YP_004597768.1| - 0.0091 15.5 0.3 0.02 14.4 0.0 1.8 2 0 0 2 2 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|336254661|ref|YP_004597768.1| - 0.012 15.5 0.1 0.037 13.9 0.0 1.9 2 0 0 2 2 1 0 MarR family HTH_Tnp_Tc3_2 PF01498.18 gi|336254661|ref|YP_004597768.1| - 0.022 15.0 0.1 19 5.6 0.0 3.4 4 0 0 4 4 4 0 Transposase Fe_dep_repress PF01325.19 gi|336254661|ref|YP_004597768.1| - 0.027 14.7 0.0 0.059 13.6 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain UPF0122 PF04297.14 gi|336254661|ref|YP_004597768.1| - 0.058 13.6 0.0 0.11 12.7 0.0 1.5 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_20 PF12840.7 gi|336254661|ref|YP_004597768.1| - 0.073 13.1 0.5 0.22 11.6 0.2 1.9 1 1 0 1 1 1 0 Helix-turn-helix domain Phage_CI_repr PF07022.13 gi|336254661|ref|YP_004597768.1| - 0.079 13.1 0.0 0.19 11.8 0.0 1.6 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain MarR PF01047.22 gi|336254661|ref|YP_004597768.1| - 0.1 12.5 0.0 0.25 11.3 0.0 1.7 1 0 0 1 1 1 0 MarR family HTH_35 PF13693.6 gi|336254661|ref|YP_004597768.1| - 0.11 12.5 0.0 0.23 11.5 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding PilN PF05137.13 gi|336254661|ref|YP_004597768.1| - 0.12 12.5 0.2 5.1 7.3 0.0 2.6 2 2 0 2 2 2 0 Fimbrial assembly protein (PilN) DUF2249 PF10006.9 gi|336254662|ref|YP_004597769.1| - 4.6e-19 68.1 0.1 5.2e-19 67.9 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) TusA PF01206.17 gi|336254662|ref|YP_004597769.1| - 0.00037 20.3 0.0 0.00051 19.8 0.0 1.4 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.9 gi|336254663|ref|YP_004597770.1| - 4.7e-26 90.5 0.9 5.1e-26 90.3 0.9 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) DUF2249 PF10006.9 gi|336254664|ref|YP_004597771.1| - 1.7e-13 50.2 0.2 2.1e-13 49.9 0.2 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) TusA PF01206.17 gi|336254664|ref|YP_004597771.1| - 0.0052 16.6 0.0 0.0077 16.0 0.0 1.3 1 0 0 1 1 1 1 Sulfurtransferase TusA Abhydrolase_1 PF00561.20 gi|336254665|ref|YP_004597772.1| - 6.2e-25 88.3 0.1 2e-24 86.7 0.1 1.7 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|336254665|ref|YP_004597772.1| - 3e-20 73.8 12.2 3.8e-20 73.4 12.2 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|336254665|ref|YP_004597772.1| - 1.2e-12 47.7 0.1 9.2e-12 44.7 0.1 1.9 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Thioesterase PF00975.20 gi|336254665|ref|YP_004597772.1| - 0.089 12.9 0.0 0.12 12.4 0.0 1.3 1 0 0 1 1 1 0 Thioesterase domain Cu-oxidase_3 PF07732.15 gi|336254666|ref|YP_004597773.1| - 9.9e-10 38.5 0.0 2.3e-09 37.3 0.0 1.6 2 0 0 2 2 2 1 Multicopper oxidase Cu-oxidase_2 PF07731.14 gi|336254666|ref|YP_004597773.1| - 1.4e-06 28.0 0.0 5.1e-06 26.3 0.0 2.0 2 1 0 2 2 2 1 Multicopper oxidase TAT_signal PF10518.9 gi|336254666|ref|YP_004597773.1| - 0.0046 16.7 0.2 0.011 15.5 0.2 1.7 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Copper-bind PF00127.20 gi|336254666|ref|YP_004597773.1| - 0.015 15.7 0.2 0.054 14.0 0.0 2.0 2 0 0 2 2 2 0 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.6 gi|336254666|ref|YP_004597773.1| - 0.09 12.9 0.0 0.17 12.0 0.0 1.5 1 0 0 1 1 1 0 Cupredoxin-like domain VATC PF18716.1 gi|336254667|ref|YP_004597774.1| - 9.1e-05 22.2 1.2 0.00013 21.7 1.2 1.3 1 1 0 1 1 1 1 Vms1-associating treble clef domain TFIIB PF00382.19 gi|336254668|ref|YP_004597775.1| - 3.8e-40 135.8 0.0 7.7e-19 67.5 0.0 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|336254668|ref|YP_004597775.1| - 1.1e-15 56.8 2.6 2.3e-15 55.8 2.6 1.6 1 0 0 1 1 1 1 TFIIB zinc-binding DZR PF12773.7 gi|336254668|ref|YP_004597775.1| - 0.015 15.3 0.5 0.026 14.6 0.5 1.3 1 0 0 1 1 1 0 Double zinc ribbon OrfB_Zn_ribbon PF07282.11 gi|336254668|ref|YP_004597775.1| - 0.03 14.2 1.7 0.056 13.4 1.3 1.7 2 0 0 2 2 2 0 Putative transposase DNA-binding domain Sigma70_r4 PF04545.16 gi|336254668|ref|YP_004597775.1| - 0.058 12.9 6.0 0.11 12.1 0.0 3.8 4 0 0 4 4 4 0 Sigma-70, region 4 YopD PF05844.12 gi|336254668|ref|YP_004597775.1| - 0.1 11.6 0.2 0.19 10.7 0.2 1.3 1 0 0 1 1 1 0 YopD protein zf-IS66 PF13005.7 gi|336254668|ref|YP_004597775.1| - 0.61 10.5 3.7 4.5 7.8 0.2 2.8 3 0 0 3 3 3 0 zinc-finger binding domain of transposase IS66 Zn-ribbon_8 PF09723.10 gi|336254668|ref|YP_004597775.1| - 1.2 9.3 5.6 2.7 8.2 0.9 2.4 1 1 1 2 2 2 0 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|336254668|ref|YP_004597775.1| - 1.2 8.7 3.7 10 5.7 3.6 2.1 1 1 0 1 1 1 0 zinc-ribbon domain DNA_ligase_ZBD PF03119.16 gi|336254668|ref|YP_004597775.1| - 1.2 9.2 4.0 3.6 7.7 4.0 1.8 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain Glu-tRNAGln PF02686.15 gi|336254669|ref|YP_004597776.1| - 3.5e-16 59.2 4.7 3.5e-16 59.2 4.7 1.4 2 0 0 2 2 2 1 Glu-tRNAGln amidotransferase C subunit Ferritin PF00210.24 gi|336254669|ref|YP_004597776.1| - 0.048 13.6 0.7 0.062 13.2 0.7 1.2 1 1 0 1 1 1 0 Ferritin-like domain Amidase PF01425.21 gi|336254670|ref|YP_004597777.1| - 1.4e-146 489.1 0.3 1.6e-146 488.8 0.3 1.0 1 0 0 1 1 1 1 Amidase MarR PF01047.22 gi|336254672|ref|YP_004597779.1| - 6.7e-05 22.7 0.0 9.7e-05 22.2 0.0 1.2 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|336254672|ref|YP_004597779.1| - 0.00013 21.8 0.0 0.00021 21.1 0.0 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|336254672|ref|YP_004597779.1| - 0.00084 19.2 0.0 0.0011 18.8 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB B-block_TFIIIC PF04182.12 gi|336254672|ref|YP_004597779.1| - 0.0012 19.0 0.0 0.0016 18.5 0.0 1.2 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_27 PF13463.6 gi|336254672|ref|YP_004597779.1| - 0.0055 17.2 0.0 0.0073 16.8 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF1495 PF07381.11 gi|336254672|ref|YP_004597779.1| - 0.15 11.9 0.0 0.2 11.5 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) HTH_24 PF13412.6 gi|336254672|ref|YP_004597779.1| - 0.16 11.6 0.0 0.27 10.8 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding TANGO2 PF05742.12 gi|336254673|ref|YP_004597780.1| - 2.3e-24 86.8 0.0 7.2e-24 85.2 0.0 1.7 1 1 0 1 1 1 1 Transport and Golgi organisation 2 AMP-binding PF00501.28 gi|336254674|ref|YP_004597781.1| - 1.9e-88 296.9 0.0 2.3e-88 296.6 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|336254674|ref|YP_004597781.1| - 9.6e-17 61.7 2.2 9.1e-16 58.6 0.6 2.4 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain MR_MLE_C PF13378.6 gi|336254675|ref|YP_004597782.1| - 9.7e-37 126.7 8.4 9.7e-37 126.7 8.4 1.7 2 0 0 2 2 2 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|336254675|ref|YP_004597782.1| - 1.2e-07 32.0 0.0 1.1e-06 28.9 0.0 2.4 1 1 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain UbiA PF01040.18 gi|336254676|ref|YP_004597783.1| - 3e-40 138.1 18.0 3e-40 138.1 18.0 1.2 1 1 0 1 1 1 1 UbiA prenyltransferase family Iron_transport PF10634.9 gi|336254677|ref|YP_004597784.1| - 0.00072 19.8 0.0 0.0034 17.6 0.0 2.0 2 0 0 2 2 2 1 Fe2+ transport protein TAT_signal PF10518.9 gi|336254677|ref|YP_004597784.1| - 0.16 11.9 2.4 0.28 11.1 2.4 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence TAT_signal PF10518.9 gi|336254678|ref|YP_004597785.1| - 0.15 12.0 0.1 0.15 12.0 0.1 1.8 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence ECH_1 PF00378.20 gi|336254679|ref|YP_004597786.1| - 3.8e-55 186.9 0.0 4.6e-55 186.6 0.0 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|336254679|ref|YP_004597786.1| - 7.1e-14 52.0 0.0 9.8e-14 51.6 0.0 1.3 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase Beta_helix PF13229.6 gi|336254680|ref|YP_004597787.1| - 3e-25 88.9 5.9 2.5e-24 85.9 2.6 2.5 2 1 0 2 2 2 2 Right handed beta helix region TAT_signal PF10518.9 gi|336254680|ref|YP_004597787.1| - 8.1 6.5 11.7 0.055 13.3 2.7 2.1 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence EamA PF00892.20 gi|336254682|ref|YP_004597789.1| - 8.1e-26 90.8 22.1 1.9e-14 54.0 10.8 2.1 2 0 0 2 2 2 2 EamA-like transporter family TPT PF03151.16 gi|336254682|ref|YP_004597789.1| - 0.082 12.2 8.0 0.53 9.6 1.4 2.4 2 1 0 2 2 2 0 Triose-phosphate Transporter family TMEM234 PF10639.9 gi|336254682|ref|YP_004597789.1| - 0.1 12.6 0.6 0.1 12.6 0.6 3.6 3 1 0 3 3 3 0 Putative transmembrane family 234 TPP_enzyme_N PF02776.18 gi|336254683|ref|YP_004597790.1| - 3e-36 124.6 0.1 1.2e-35 122.7 0.0 2.0 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|336254683|ref|YP_004597790.1| - 5.9e-09 35.9 0.0 1.3e-08 34.8 0.0 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|336254683|ref|YP_004597790.1| - 0.00012 21.8 0.0 0.00026 20.7 0.0 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain TPP_enzyme_M_2 PF16582.5 gi|336254683|ref|YP_004597790.1| - 0.00065 19.5 0.0 0.0013 18.5 0.0 1.4 1 1 0 1 1 1 1 Middle domain of thiamine pyrophosphate Chorismate_bind PF00425.18 gi|336254684|ref|YP_004597791.1| - 1.5e-74 250.8 0.0 2.2e-74 250.3 0.0 1.2 1 0 0 1 1 1 1 chorismate binding enzyme Oxidored_molyb PF00174.19 gi|336254685|ref|YP_004597792.1| - 6.2e-38 130.1 0.0 7.7e-38 129.8 0.0 1.1 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain RHH_1 PF01402.21 gi|336254687|ref|YP_004597794.1| - 0.0034 17.3 0.1 0.0045 16.9 0.1 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family IclR PF01614.18 gi|336254687|ref|YP_004597794.1| - 0.015 15.1 0.0 0.019 14.8 0.0 1.1 1 0 0 1 1 1 0 Bacterial transcriptional regulator YjbE PF11106.8 gi|336254688|ref|YP_004597795.1| - 0.045 14.0 3.4 0.065 13.5 3.4 1.4 1 1 0 1 1 1 0 Exopolysaccharide production protein YjbE TAT_signal PF10518.9 gi|336254690|ref|YP_004597797.1| - 0.028 14.3 3.9 0.069 13.0 3.9 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.9 gi|336254690|ref|YP_004597797.1| - 0.029 13.7 0.3 0.11 11.9 0.3 1.9 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal DUF4407 PF14362.6 gi|336254690|ref|YP_004597797.1| - 0.24 10.7 5.4 0.11 11.9 1.8 2.2 2 1 0 2 2 2 0 Domain of unknown function (DUF4407) His_biosynth PF00977.21 gi|336254691|ref|YP_004597798.1| - 3.3e-80 268.8 0.1 3.8e-80 268.6 0.1 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.17 gi|336254691|ref|YP_004597798.1| - 9.9e-08 31.4 0.0 6.2e-07 28.8 0.0 1.9 2 0 0 2 2 2 1 Dihydrouridine synthase (Dus) NMO PF03060.15 gi|336254691|ref|YP_004597798.1| - 7.3e-06 25.6 1.2 0.00021 20.8 0.1 2.1 2 0 0 2 2 2 1 Nitronate monooxygenase G3P_antiterm PF04309.12 gi|336254691|ref|YP_004597798.1| - 9.8e-05 21.8 0.0 0.0002 20.8 0.0 1.5 2 0 0 2 2 2 1 Glycerol-3-phosphate responsive antiterminator ThiG PF05690.14 gi|336254691|ref|YP_004597798.1| - 0.00028 20.3 0.1 0.0094 15.3 0.0 2.2 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG DHO_dh PF01180.21 gi|336254691|ref|YP_004597798.1| - 0.00059 19.1 0.1 0.0014 17.9 0.0 1.5 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase TMP-TENI PF02581.17 gi|336254691|ref|YP_004597798.1| - 0.011 15.1 0.2 0.12 11.7 0.0 2.1 2 0 0 2 2 2 0 Thiamine monophosphate synthase PcrB PF01884.17 gi|336254691|ref|YP_004597798.1| - 0.013 15.0 0.1 0.022 14.2 0.1 1.4 1 0 0 1 1 1 0 PcrB family IMPDH PF00478.25 gi|336254691|ref|YP_004597798.1| - 0.022 13.7 0.0 0.034 13.1 0.0 1.2 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain Glu_synthase PF01645.17 gi|336254691|ref|YP_004597798.1| - 0.031 13.4 0.1 0.048 12.8 0.1 1.2 1 0 0 1 1 1 0 Conserved region in glutamate synthase FMN_dh PF01070.18 gi|336254691|ref|YP_004597798.1| - 0.043 12.8 0.2 0.094 11.7 0.2 1.5 1 0 0 1 1 1 0 FMN-dependent dehydrogenase zinc_ribbon_2 PF13240.6 gi|336254692|ref|YP_004597799.1| - 3.3e-08 33.0 18.3 0.00036 20.1 5.0 2.3 2 0 0 2 2 2 2 zinc-ribbon domain NOB1_Zn_bind PF08772.11 gi|336254692|ref|YP_004597799.1| - 0.00028 21.0 2.7 0.31 11.2 0.2 2.5 2 1 0 2 2 2 2 Nin one binding (NOB1) Zn-ribbon like ARL6IP6 PF15062.6 gi|336254692|ref|YP_004597799.1| - 0.028 14.5 0.4 0.045 13.9 0.4 1.3 1 0 0 1 1 1 0 Haemopoietic lineage transmembrane helix DUF3797 PF12677.7 gi|336254692|ref|YP_004597799.1| - 0.059 13.3 0.2 0.059 13.3 0.2 2.5 2 1 1 3 3 3 0 Domain of unknown function (DUF3797) DZR PF12773.7 gi|336254692|ref|YP_004597799.1| - 0.1 12.6 13.3 0.37 10.8 2.6 2.2 1 1 1 2 2 2 0 Double zinc ribbon HypA PF01155.19 gi|336254692|ref|YP_004597799.1| - 0.22 11.6 6.9 1.5 8.9 0.5 2.3 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Cytochrom_c3_2 PF14537.6 gi|336254692|ref|YP_004597799.1| - 1.1 9.7 5.4 26 5.4 0.1 2.3 2 0 0 2 2 2 0 Cytochrome c3 zf-RING_7 PF02591.15 gi|336254692|ref|YP_004597799.1| - 1.6 9.0 5.1 1.8 8.8 0.2 2.9 2 0 0 2 2 2 0 C4-type zinc ribbon domain Nudix_N_2 PF14803.6 gi|336254692|ref|YP_004597799.1| - 1.8 8.5 8.9 27 4.8 0.1 4.1 3 1 1 4 4 4 0 Nudix N-terminal Zn-ribbon_8 PF09723.10 gi|336254692|ref|YP_004597799.1| - 1.9 8.7 12.9 3.5 7.8 2.3 2.9 2 2 0 2 2 2 0 Zinc ribbon domain Zn_ribbon_SprT PF17283.2 gi|336254692|ref|YP_004597799.1| - 2.7 8.0 13.0 0.79 9.7 4.7 2.7 2 1 0 2 2 2 0 SprT-like zinc ribbon domain HalOD2 PF18547.1 gi|336254692|ref|YP_004597799.1| - 3.6 7.6 16.4 0.26 11.2 1.1 3.3 2 2 2 4 4 4 0 Halobacterial output domain 2 zf-ribbon_3 PF13248.6 gi|336254692|ref|YP_004597799.1| - 4.9 6.7 18.3 4.2 6.9 0.3 3.7 3 1 0 3 3 3 0 zinc-ribbon domain RNA_pol_L_2 PF13656.6 gi|336254693|ref|YP_004597800.1| - 1.1e-17 63.6 0.0 1.3e-17 63.4 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.24 gi|336254693|ref|YP_004597800.1| - 1.7e-07 30.5 0.0 3.4e-07 29.6 0.0 1.5 1 1 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Rhomboid PF01694.22 gi|336254694|ref|YP_004597801.1| - 6.9e-09 35.9 17.0 7.4e-06 26.0 7.6 2.8 3 0 0 3 3 3 2 Rhomboid family DUF4131 PF13567.6 gi|336254694|ref|YP_004597801.1| - 4.3 6.9 20.5 1 9.0 0.9 4.2 4 1 1 5 5 5 0 Domain of unknown function (DUF4131) ABC_tran PF00005.27 gi|336254695|ref|YP_004597802.1| - 1.2e-33 116.5 0.0 1.6e-33 116.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_29 PF13555.6 gi|336254695|ref|YP_004597802.1| - 9.9e-07 28.4 0.1 1.7e-06 27.6 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|336254695|ref|YP_004597802.1| - 9.7e-06 25.2 0.0 0.00017 21.1 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|336254695|ref|YP_004597802.1| - 0.00047 20.6 0.2 0.00074 19.9 0.2 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_21 PF13304.6 gi|336254695|ref|YP_004597802.1| - 0.00053 19.9 0.1 1.1 9.0 0.1 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system NTPase_1 PF03266.15 gi|336254695|ref|YP_004597802.1| - 0.0053 16.7 0.3 0.46 10.4 0.1 2.2 2 0 0 2 2 2 1 NTPase AAA_22 PF13401.6 gi|336254695|ref|YP_004597802.1| - 0.012 15.9 0.1 0.12 12.6 0.1 2.1 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|336254695|ref|YP_004597802.1| - 0.013 15.3 1.9 0.11 12.2 1.9 2.1 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|336254695|ref|YP_004597802.1| - 0.018 14.4 0.0 0.027 13.8 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_23 PF13476.6 gi|336254695|ref|YP_004597802.1| - 0.025 15.1 0.0 0.036 14.6 0.0 1.2 1 0 0 1 1 1 0 AAA domain MeaB PF03308.16 gi|336254695|ref|YP_004597802.1| - 0.036 13.0 0.3 0.059 12.4 0.3 1.3 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA PF00004.29 gi|336254695|ref|YP_004597802.1| - 0.05 14.0 0.0 0.12 12.8 0.0 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) PRK PF00485.18 gi|336254695|ref|YP_004597802.1| - 0.18 11.6 0.0 0.25 11.0 0.0 1.2 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family Rad17 PF03215.15 gi|336254695|ref|YP_004597802.1| - 0.25 11.2 0.0 0.34 10.8 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_33 PF13671.6 gi|336254695|ref|YP_004597802.1| - 0.29 11.3 1.9 1.4 9.0 1.4 2.2 1 1 0 1 1 1 0 AAA domain FtsX PF02687.21 gi|336254696|ref|YP_004597803.1| - 0.00023 21.6 3.4 0.00023 21.6 3.4 2.8 3 0 0 3 3 3 1 FtsX-like permease family EutK_C PF16365.5 gi|336254696|ref|YP_004597803.1| - 2.8 8.1 5.9 2.3 8.3 0.2 3.3 2 1 1 3 3 3 0 Ethanolamine utilization protein EutK C-terminus MacB_PCD PF12704.7 gi|336254697|ref|YP_004597804.1| - 2.5e-17 63.9 4.0 2.5e-17 63.9 4.0 2.1 2 1 1 3 3 3 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|336254697|ref|YP_004597804.1| - 9.5e-10 38.8 1.1 9.5e-10 38.8 1.1 2.7 3 0 0 3 3 3 1 FtsX-like permease family LptF_LptG PF03739.14 gi|336254697|ref|YP_004597804.1| - 0.011 14.6 0.8 0.011 14.6 0.8 2.1 2 0 0 2 2 2 0 Lipopolysaccharide export system permease LptF/LptG MTS PF05175.14 gi|336254698|ref|YP_004597805.1| - 6.4e-13 48.6 0.0 9.5e-13 48.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|336254698|ref|YP_004597805.1| - 1e-11 44.8 0.2 1.4e-11 44.4 0.2 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_25 PF13649.6 gi|336254698|ref|YP_004597805.1| - 7.2e-10 39.4 0.0 1.3e-09 38.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|336254698|ref|YP_004597805.1| - 4.5e-09 36.3 0.0 6.9e-09 35.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|336254698|ref|YP_004597805.1| - 7.4e-07 29.7 0.0 1.4e-06 28.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.18 gi|336254698|ref|YP_004597805.1| - 7.7e-07 29.0 0.1 2.8e-06 27.2 0.1 1.9 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Cons_hypoth95 PF03602.15 gi|336254698|ref|YP_004597805.1| - 0.00048 19.8 0.0 0.00061 19.5 0.0 1.1 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Met_10 PF02475.16 gi|336254698|ref|YP_004597805.1| - 0.00057 19.7 0.0 0.00086 19.1 0.0 1.2 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_32 PF13679.6 gi|336254698|ref|YP_004597805.1| - 0.00082 19.4 0.0 0.001 19.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|336254698|ref|YP_004597805.1| - 0.0014 18.2 0.0 0.0017 18.0 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Ubie_methyltran PF01209.18 gi|336254698|ref|YP_004597805.1| - 0.0015 17.9 0.0 0.0035 16.7 0.0 1.5 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|336254698|ref|YP_004597805.1| - 0.0022 18.7 0.0 0.0043 17.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain N6_Mtase PF02384.16 gi|336254698|ref|YP_004597805.1| - 0.0043 16.3 0.0 0.006 15.9 0.0 1.2 1 0 0 1 1 1 1 N-6 DNA Methylase Methyltransf_3 PF01596.17 gi|336254698|ref|YP_004597805.1| - 0.0059 15.8 0.0 0.0077 15.4 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_23 PF13489.6 gi|336254698|ref|YP_004597805.1| - 0.0074 16.1 0.0 0.0078 16.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|336254698|ref|YP_004597805.1| - 0.026 14.3 0.0 0.035 13.9 0.0 1.1 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CbiA PF01656.23 gi|336254698|ref|YP_004597805.1| - 0.048 13.7 0.0 0.065 13.3 0.0 1.3 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain Methyltransf_4 PF02390.17 gi|336254698|ref|YP_004597805.1| - 0.14 11.6 0.0 0.28 10.6 0.0 1.4 1 0 0 1 1 1 0 Putative methyltransferase Methyltr_RsmB-F PF01189.17 gi|336254698|ref|YP_004597805.1| - 0.15 11.7 0.0 0.2 11.3 0.0 1.1 1 0 0 1 1 1 0 16S rRNA methyltransferase RsmB/F AP_endonuc_2 PF01261.24 gi|336254699|ref|YP_004597806.1| - 0.031 13.7 0.1 0.039 13.4 0.1 1.1 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel zf-TFIIB PF13453.6 gi|336254700|ref|YP_004597807.1| - 5.9e-05 22.3 2.9 8.9e-05 21.7 2.9 1.3 1 0 0 1 1 1 1 Transcription factor zinc-finger zf-FPG_IleRS PF06827.14 gi|336254700|ref|YP_004597807.1| - 9.5e-05 22.2 0.7 0.00014 21.6 0.7 1.3 1 0 0 1 1 1 1 Zinc finger found in FPG and IleRS DUF4776 PF16003.5 gi|336254700|ref|YP_004597807.1| - 0.01 14.9 0.5 0.011 14.8 0.5 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4776) UPF0547 PF10571.9 gi|336254700|ref|YP_004597807.1| - 0.017 15.2 2.1 0.62 10.2 0.1 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 TRAF6_Z2 PF18048.1 gi|336254700|ref|YP_004597807.1| - 0.041 14.0 2.9 1.3 9.2 0.4 2.2 2 0 0 2 2 2 0 TNF receptor-associated factor 6 zinc finger 2 Zn-ribbon_8 PF09723.10 gi|336254700|ref|YP_004597807.1| - 0.059 13.5 2.0 0.13 12.4 2.0 1.6 1 1 0 1 1 1 0 Zinc ribbon domain Anti-TRAP PF15777.5 gi|336254700|ref|YP_004597807.1| - 0.077 13.0 0.7 0.13 12.2 0.7 1.3 1 0 0 1 1 1 0 Tryptophan RNA-binding attenuator protein inhibitory protein Zn_Tnp_IS1 PF03811.13 gi|336254700|ref|YP_004597807.1| - 0.33 10.7 6.2 1.8 8.4 0.8 2.2 2 0 0 2 2 2 0 InsA N-terminal domain Zn_Tnp_IS1595 PF12760.7 gi|336254700|ref|YP_004597807.1| - 0.33 10.9 4.2 1.9 8.5 0.1 2.2 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|336254700|ref|YP_004597807.1| - 0.4 10.2 3.5 4.2 6.9 0.6 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Actin PF00022.19 gi|336254701|ref|YP_004597808.1| - 0.00075 18.2 0.0 0.32 9.5 0.0 2.2 2 0 0 2 2 2 2 Actin FtsA PF14450.6 gi|336254701|ref|YP_004597808.1| - 0.021 15.2 0.0 0.1 13.0 0.0 1.9 2 0 0 2 2 2 0 Cell division protein FtsA Aegerolysin PF06355.13 gi|336254702|ref|YP_004597809.1| - 0.073 13.2 0.2 0.14 12.2 0.2 1.4 1 0 0 1 1 1 0 Aegerolysin DUF417 PF04224.12 gi|336254702|ref|YP_004597809.1| - 0.077 12.6 0.4 0.13 11.8 0.4 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF417 Diphthamide_syn PF01866.17 gi|336254703|ref|YP_004597810.1| - 1.8e-78 264.1 0.0 2.3e-78 263.7 0.0 1.0 1 0 0 1 1 1 1 Putative diphthamide synthesis protein GTP-bdg_N PF13167.6 gi|336254703|ref|YP_004597810.1| - 0.067 13.9 0.0 2.5 8.8 0.0 2.4 1 1 0 2 2 2 0 GTP-binding GTPase N-terminal CCB1 PF12046.8 gi|336254703|ref|YP_004597810.1| - 0.25 10.7 0.0 0.41 10.0 0.0 1.2 1 0 0 1 1 1 0 Cofactor assembly of complex C subunit B HTH_20 PF12840.7 gi|336254704|ref|YP_004597811.1| - 0.047 13.8 10.0 8.6 6.5 2.5 4.3 3 1 1 4 4 4 0 Helix-turn-helix domain HTH_5 PF01022.20 gi|336254704|ref|YP_004597811.1| - 0.73 9.8 4.2 8.9 6.3 0.2 2.9 4 0 0 4 4 4 0 Bacterial regulatory protein, arsR family Lactamase_B_2 PF12706.7 gi|336254705|ref|YP_004597812.1| - 3.6e-17 62.6 0.5 4.8e-17 62.1 0.5 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|336254705|ref|YP_004597812.1| - 9.8e-11 41.8 0.0 1.5e-10 41.2 0.0 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|336254705|ref|YP_004597812.1| - 0.0058 16.7 9.6 0.026 14.6 9.6 1.9 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Laminin_II PF06009.12 gi|336254706|ref|YP_004597813.1| - 1.3e-07 31.7 7.5 0.0009 19.3 2.4 2.5 1 1 1 2 2 2 2 Laminin Domain II EzrA PF06160.12 gi|336254706|ref|YP_004597813.1| - 2.4e-07 29.3 6.2 3.6e-07 28.8 6.2 1.3 1 0 0 1 1 1 1 Septation ring formation regulator, EzrA Lebercilin PF15619.6 gi|336254706|ref|YP_004597813.1| - 7e-07 29.1 0.7 3.8e-06 26.7 0.5 2.1 1 1 1 2 2 2 1 Ciliary protein causing Leber congenital amaurosis disease AAA_13 PF13166.6 gi|336254706|ref|YP_004597813.1| - 2.6e-06 26.4 2.3 2.6e-06 26.4 2.3 1.4 2 0 0 2 2 1 1 AAA domain GAS PF13851.6 gi|336254706|ref|YP_004597813.1| - 4e-06 26.3 1.4 5.8e-05 22.5 0.1 2.5 2 1 0 2 2 1 1 Growth-arrest specific micro-tubule binding DUF1664 PF07889.12 gi|336254706|ref|YP_004597813.1| - 6.7e-06 26.2 12.1 0.0026 17.8 2.1 3.4 1 1 2 3 3 3 2 Protein of unknown function (DUF1664) NPV_P10 PF05531.12 gi|336254706|ref|YP_004597813.1| - 1.1e-05 25.8 22.0 0.0027 18.2 6.2 4.2 1 1 2 3 3 3 2 Nucleopolyhedrovirus P10 protein Spc7 PF08317.11 gi|336254706|ref|YP_004597813.1| - 1.2e-05 24.4 13.2 0.00077 18.4 6.9 3.1 1 1 1 2 2 2 2 Spc7 kinetochore protein CENP-F_leu_zip PF10473.9 gi|336254706|ref|YP_004597813.1| - 1.5e-05 25.1 20.4 2.7e-05 24.2 3.7 2.8 2 1 1 3 3 2 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 TMF_TATA_bd PF12325.8 gi|336254706|ref|YP_004597813.1| - 2.9e-05 24.3 12.3 0.00067 19.9 0.1 3.4 1 1 2 3 3 3 1 TATA element modulatory factor 1 TATA binding Baculo_PEP_C PF04513.12 gi|336254706|ref|YP_004597813.1| - 4.9e-05 23.4 7.4 0.003 17.6 2.5 2.5 1 1 1 2 2 2 2 Baculovirus polyhedron envelope protein, PEP, C terminus FlaC_arch PF05377.11 gi|336254706|ref|YP_004597813.1| - 7e-05 23.1 17.3 0.034 14.6 1.0 4.8 2 1 3 5 5 4 2 Flagella accessory protein C (FlaC) XhlA PF10779.9 gi|336254706|ref|YP_004597813.1| - 9.1e-05 22.6 17.9 0.0037 17.4 2.3 4.0 2 1 1 4 4 3 2 Haemolysin XhlA Mod_r PF07200.13 gi|336254706|ref|YP_004597813.1| - 0.0001 22.5 1.5 0.2 11.7 0.1 3.3 1 1 1 2 2 2 1 Modifier of rudimentary (Mod(r)) protein MscS_porin PF12795.7 gi|336254706|ref|YP_004597813.1| - 0.00011 21.9 7.6 0.064 12.8 0.1 3.7 3 1 1 4 4 3 2 Mechanosensitive ion channel porin domain ADIP PF11559.8 gi|336254706|ref|YP_004597813.1| - 0.0004 20.5 0.3 0.14 12.3 0.0 2.5 1 1 1 2 2 2 1 Afadin- and alpha -actinin-Binding Prefoldin_2 PF01920.20 gi|336254706|ref|YP_004597813.1| - 0.00058 19.8 9.6 0.0034 17.3 3.8 3.4 1 1 2 3 3 3 1 Prefoldin subunit HsbA PF12296.8 gi|336254706|ref|YP_004597813.1| - 0.00066 20.1 1.2 0.00066 20.1 1.2 2.1 2 0 0 2 2 1 1 Hydrophobic surface binding protein A DUF2730 PF10805.8 gi|336254706|ref|YP_004597813.1| - 0.00069 19.7 13.1 0.068 13.3 1.2 3.3 2 1 2 4 4 3 3 Protein of unknown function (DUF2730) Sec34 PF04136.15 gi|336254706|ref|YP_004597813.1| - 0.0014 18.5 8.5 0.095 12.6 0.3 3.0 2 1 2 4 4 3 3 Sec34-like family DUF724 PF05266.14 gi|336254706|ref|YP_004597813.1| - 0.0021 17.9 1.5 0.13 12.1 0.3 2.3 1 1 1 2 2 2 1 Protein of unknown function (DUF724) BLOC1_2 PF10046.9 gi|336254706|ref|YP_004597813.1| - 0.0023 18.2 12.8 0.23 11.8 0.9 3.8 2 1 0 3 3 3 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 HMMR_N PF15905.5 gi|336254706|ref|YP_004597813.1| - 0.0028 17.2 7.5 0.03 13.8 7.4 2.2 1 1 0 1 1 1 1 Hyaluronan mediated motility receptor N-terminal DUF3450 PF11932.8 gi|336254706|ref|YP_004597813.1| - 0.0028 17.0 9.5 0.07 12.4 0.9 3.3 1 1 2 3 3 3 2 Protein of unknown function (DUF3450) APG6_N PF17675.1 gi|336254706|ref|YP_004597813.1| - 0.0039 17.7 11.9 0.014 16.0 2.4 3.9 2 1 2 4 4 4 2 Apg6 coiled-coil region Prefoldin PF02996.17 gi|336254706|ref|YP_004597813.1| - 0.0054 16.6 7.1 2.7 7.9 0.2 4.2 2 1 1 4 4 4 0 Prefoldin subunit DUF948 PF06103.11 gi|336254706|ref|YP_004597813.1| - 0.0075 16.5 14.9 0.011 16.0 5.0 3.2 1 1 1 2 2 2 1 Bacterial protein of unknown function (DUF948) UPF0242 PF06785.11 gi|336254706|ref|YP_004597813.1| - 0.0076 16.4 8.9 0.03 14.4 1.7 2.4 1 1 1 2 2 2 1 Uncharacterised protein family (UPF0242) N-terminus DegS PF05384.11 gi|336254706|ref|YP_004597813.1| - 0.0079 15.7 5.0 0.13 11.7 0.3 2.6 2 0 0 2 2 2 1 Sensor protein DegS FH2 PF02181.23 gi|336254706|ref|YP_004597813.1| - 0.009 15.2 5.7 0.026 13.7 0.7 2.4 1 1 1 2 2 2 1 Formin Homology 2 Domain DUF4618 PF15397.6 gi|336254706|ref|YP_004597813.1| - 0.0099 15.3 1.1 0.17 11.3 1.9 2.4 2 1 0 2 2 1 1 Domain of unknown function (DUF4618) Spectrin PF00435.21 gi|336254706|ref|YP_004597813.1| - 0.01 16.3 2.5 0.01 16.3 2.5 3.9 2 1 3 5 5 4 0 Spectrin repeat SHE3 PF17078.5 gi|336254706|ref|YP_004597813.1| - 0.011 15.4 2.7 0.019 14.7 2.7 1.3 1 0 0 1 1 1 0 SWI5-dependent HO expression protein 3 COG6 PF06419.11 gi|336254706|ref|YP_004597813.1| - 0.013 13.8 3.6 0.78 7.9 0.3 2.4 1 1 0 2 2 2 0 Conserved oligomeric complex COG6 TPR_MLP1_2 PF07926.12 gi|336254706|ref|YP_004597813.1| - 0.013 15.6 1.3 0.013 15.6 1.3 3.5 2 1 2 4 4 3 0 TPR/MLP1/MLP2-like protein COG2 PF06148.11 gi|336254706|ref|YP_004597813.1| - 0.014 15.5 8.9 1.5 8.9 2.4 3.3 1 1 2 3 3 3 0 COG (conserved oligomeric Golgi) complex component, COG2 RmuC PF02646.16 gi|336254706|ref|YP_004597813.1| - 0.014 14.5 0.6 1.8 7.6 0.1 2.7 1 1 1 2 2 2 0 RmuC family Leu_zip PF15294.6 gi|336254706|ref|YP_004597813.1| - 0.015 14.9 6.9 0.044 13.3 1.1 2.4 1 1 1 2 2 2 0 Leucine zipper DUF16 PF01519.16 gi|336254706|ref|YP_004597813.1| - 0.016 15.7 6.6 0.64 10.5 0.6 2.6 1 1 1 2 2 2 0 Protein of unknown function DUF16 YabA PF06156.13 gi|336254706|ref|YP_004597813.1| - 0.017 15.7 1.7 6.9 7.4 0.2 3.1 1 1 1 2 2 2 0 Initiation control protein YabA TMPIT PF07851.13 gi|336254706|ref|YP_004597813.1| - 0.018 14.3 0.6 0.83 8.8 0.1 2.1 1 1 1 2 2 2 0 TMPIT-like protein TBCC_N PF16752.5 gi|336254706|ref|YP_004597813.1| - 0.018 15.4 9.3 0.077 13.4 0.8 3.3 2 1 2 4 4 3 0 Tubulin-specific chaperone C N-terminal domain DUF4795 PF16043.5 gi|336254706|ref|YP_004597813.1| - 0.019 14.6 15.2 0.033 13.8 14.0 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4795) DUF4349 PF14257.6 gi|336254706|ref|YP_004597813.1| - 0.02 14.4 22.2 0.045 13.2 1.2 3.6 1 1 2 3 3 3 0 Domain of unknown function (DUF4349) Cob_adeno_trans PF01923.18 gi|336254706|ref|YP_004597813.1| - 0.023 14.8 6.1 0.17 12.0 1.0 2.7 1 1 1 2 2 2 0 Cobalamin adenosyltransferase Atg14 PF10186.9 gi|336254706|ref|YP_004597813.1| - 0.029 13.5 0.0 3 6.8 0.0 2.1 1 1 1 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 Fib_alpha PF08702.10 gi|336254706|ref|YP_004597813.1| - 0.031 14.4 2.8 0.49 10.6 0.7 2.5 1 1 2 3 3 3 0 Fibrinogen alpha/beta chain family Filament PF00038.21 gi|336254706|ref|YP_004597813.1| - 0.034 13.7 11.5 0.93 9.0 5.8 2.5 1 1 0 1 1 1 0 Intermediate filament protein Laminin_I PF06008.14 gi|336254706|ref|YP_004597813.1| - 0.04 13.6 3.6 0.26 11.0 0.2 2.3 1 1 1 2 2 2 0 Laminin Domain I Nsp1_C PF05064.13 gi|336254706|ref|YP_004597813.1| - 0.047 13.5 9.4 0.78 9.6 2.4 2.7 1 1 1 2 2 2 0 Nsp1-like C-terminal region PI3K_P85_iSH2 PF16454.5 gi|336254706|ref|YP_004597813.1| - 0.05 13.2 1.0 6.5 6.3 1.0 2.7 1 1 0 1 1 1 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain SKA1 PF07160.12 gi|336254706|ref|YP_004597813.1| - 0.055 13.3 7.0 2.4 7.9 0.1 3.4 2 1 1 3 3 2 0 Spindle and kinetochore-associated protein 1 CREPT PF16566.5 gi|336254706|ref|YP_004597813.1| - 0.056 13.6 0.9 0.44 10.7 0.2 2.3 1 1 2 3 3 3 0 Cell-cycle alteration and expression-elevated protein in tumour SYCE1 PF15233.6 gi|336254706|ref|YP_004597813.1| - 0.059 13.4 0.3 0.13 12.3 0.3 1.6 1 0 0 1 1 1 0 Synaptonemal complex central element protein 1 DUF5082 PF16888.5 gi|336254706|ref|YP_004597813.1| - 0.071 13.4 6.3 0.64 10.3 6.3 2.9 1 1 0 1 1 1 0 Domain of unknown function (DUF5082) DUF4201 PF13870.6 gi|336254706|ref|YP_004597813.1| - 0.075 12.8 1.5 0.67 9.7 0.2 2.6 1 1 2 3 3 3 0 Domain of unknown function (DUF4201) DUF3552 PF12072.8 gi|336254706|ref|YP_004597813.1| - 0.077 12.4 6.4 0.77 9.1 0.8 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF3552) Prominin PF05478.11 gi|336254706|ref|YP_004597813.1| - 0.082 10.8 0.7 0.13 10.2 0.7 1.2 1 0 0 1 1 1 0 Prominin HOOK PF05622.12 gi|336254706|ref|YP_004597813.1| - 0.09 10.9 12.7 0.29 9.2 12.8 1.7 1 1 0 1 1 1 0 HOOK protein CCDC-167 PF15188.6 gi|336254706|ref|YP_004597813.1| - 0.11 12.8 13.7 2.8 8.3 0.6 3.9 2 1 3 5 5 4 0 Coiled-coil domain-containing protein 167 CENP-H PF05837.12 gi|336254706|ref|YP_004597813.1| - 0.12 12.8 1.9 7.4 7.0 0.1 3.1 2 1 0 2 2 2 0 Centromere protein H (CENP-H) MCPsignal PF00015.21 gi|336254706|ref|YP_004597813.1| - 0.15 11.8 8.6 1.5 8.6 3.7 2.6 1 1 1 2 2 2 0 Methyl-accepting chemotaxis protein (MCP) signalling domain Fzo_mitofusin PF04799.13 gi|336254706|ref|YP_004597813.1| - 0.16 11.6 3.5 0.41 10.2 0.2 2.7 1 1 1 3 3 3 0 fzo-like conserved region ZapB PF06005.12 gi|336254706|ref|YP_004597813.1| - 0.19 12.2 1.6 12 6.4 0.1 3.7 1 1 1 2 2 2 0 Cell division protein ZapB Golgin_A5 PF09787.9 gi|336254706|ref|YP_004597813.1| - 0.23 10.9 12.8 0.43 10.0 3.6 2.3 1 1 1 2 2 2 0 Golgin subfamily A member 5 Rx_N PF18052.1 gi|336254706|ref|YP_004597813.1| - 0.24 11.7 16.9 0.032 14.5 2.0 4.0 2 1 1 3 3 3 0 Rx N-terminal domain Snapin_Pallidin PF14712.6 gi|336254706|ref|YP_004597813.1| - 0.25 11.8 1.2 20 5.7 0.1 3.0 2 1 1 3 3 2 0 Snapin/Pallidin TMF_DNA_bd PF12329.8 gi|336254706|ref|YP_004597813.1| - 0.26 11.3 5.4 34 4.5 0.2 4.1 1 1 1 3 3 3 0 TATA element modulatory factor 1 DNA binding YscO-like PF16789.5 gi|336254706|ref|YP_004597813.1| - 0.28 11.2 6.4 0.29 11.1 0.7 2.4 1 1 1 2 2 2 0 YscO-like protein V_ATPase_I PF01496.19 gi|336254706|ref|YP_004597813.1| - 0.3 9.0 3.4 1.8 6.4 2.4 2.2 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family Tropomyosin_1 PF12718.7 gi|336254706|ref|YP_004597813.1| - 0.3 11.2 28.9 0.036 14.2 7.3 4.0 2 1 2 4 4 3 0 Tropomyosin like Swi5 PF07061.11 gi|336254706|ref|YP_004597813.1| - 0.39 10.8 4.3 3.3 7.9 0.0 3.7 3 1 1 4 4 3 0 Swi5 CLZ PF16526.5 gi|336254706|ref|YP_004597813.1| - 0.42 11.0 7.7 22 5.5 0.1 4.7 1 1 4 5 5 5 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels CdvA PF18822.1 gi|336254706|ref|YP_004597813.1| - 0.45 10.3 6.1 7.2 6.5 0.6 4.0 1 1 1 3 3 3 0 CdvA-like coiled-coil domain Cluap1 PF10234.9 gi|336254706|ref|YP_004597813.1| - 0.61 9.4 6.0 2.7 7.3 5.5 2.2 1 1 0 1 1 1 0 Clusterin-associated protein-1 LXG PF04740.12 gi|336254706|ref|YP_004597813.1| - 0.62 9.7 11.4 7.9 6.1 11.0 2.6 1 1 1 2 2 1 0 LXG domain of WXG superfamily Cauli_AT PF03233.13 gi|336254706|ref|YP_004597813.1| - 0.63 10.0 1.7 98 2.8 1.5 3.3 2 1 1 3 3 2 0 Aphid transmission protein Phage_HK97_TLTM PF06120.11 gi|336254706|ref|YP_004597813.1| - 0.63 9.2 3.7 4.2 6.5 3.8 2.2 1 1 1 2 2 2 0 Tail length tape measure protein Zw10 PF06248.13 gi|336254706|ref|YP_004597813.1| - 0.64 8.5 7.3 1.5 7.3 7.3 1.6 1 1 0 1 1 1 0 Centromere/kinetochore Zw10 Sec2p PF06428.11 gi|336254706|ref|YP_004597813.1| - 0.68 9.9 6.9 10 6.2 0.5 3.0 2 0 0 2 2 2 0 GDP/GTP exchange factor Sec2p PspA_IM30 PF04012.12 gi|336254706|ref|YP_004597813.1| - 0.68 9.5 10.9 0.37 10.3 0.6 3.3 2 1 1 3 3 2 0 PspA/IM30 family Cnn_1N PF07989.11 gi|336254706|ref|YP_004597813.1| - 0.75 10.0 7.1 7.5 6.8 0.2 3.6 2 1 0 2 2 2 0 Centrosomin N-terminal motif 1 Phage_GP20 PF06810.11 gi|336254706|ref|YP_004597813.1| - 0.89 9.3 19.4 0.43 10.4 3.2 3.3 2 1 1 3 3 2 0 Phage minor structural protein GP20 Sec3_C PF09763.9 gi|336254706|ref|YP_004597813.1| - 1 7.7 12.2 0.085 11.2 2.6 2.3 1 1 1 2 2 2 0 Exocyst complex component Sec3 Phage_tail_NK PF16532.5 gi|336254706|ref|YP_004597813.1| - 1.1 8.9 8.9 0.13 11.9 0.6 2.7 2 1 1 3 3 2 0 Sf6-type phage tail needle knob or tip of some Caudovirales AIP3 PF03915.13 gi|336254706|ref|YP_004597813.1| - 1.1 8.3 17.3 7.5 5.5 16.9 2.3 1 1 0 1 1 1 0 Actin interacting protein 3 THOC7 PF05615.13 gi|336254706|ref|YP_004597813.1| - 1.2 9.4 6.4 1.7 8.9 1.9 2.7 1 1 1 2 2 2 0 Tho complex subunit 7 MIP-T3_C PF17749.1 gi|336254706|ref|YP_004597813.1| - 1.2 9.1 7.6 5 7.1 4.0 2.8 1 1 1 2 2 2 0 Microtubule-binding protein MIP-T3 C-terminal region Not3 PF04065.15 gi|336254706|ref|YP_004597813.1| - 1.5 8.2 6.7 5.5 6.4 4.6 2.4 1 1 1 2 2 2 0 Not1 N-terminal domain, CCR4-Not complex component CAMP_factor PF07373.11 gi|336254706|ref|YP_004597813.1| - 2 7.9 6.9 0.11 12.0 1.4 1.8 2 0 0 2 2 1 0 CAMP factor (Cfa) MtrB PF05440.12 gi|336254706|ref|YP_004597813.1| - 2.5 8.6 7.4 31 5.1 2.3 3.5 2 1 2 4 4 2 0 Tetrahydromethanopterin S-methyltransferase subunit B Fez1 PF06818.15 gi|336254706|ref|YP_004597813.1| - 2.6 8.5 14.0 0.26 11.7 6.0 2.9 1 1 1 2 2 1 0 Fez1 Seryl_tRNA_N PF02403.22 gi|336254706|ref|YP_004597813.1| - 2.7 8.3 12.5 3.2 8.0 0.5 3.6 2 1 2 4 4 3 0 Seryl-tRNA synthetase N-terminal domain CC2-LZ PF16516.5 gi|336254706|ref|YP_004597813.1| - 3.1 8.2 11.8 9.5 6.7 0.4 4.0 2 1 2 4 4 4 0 Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator LPP PF04728.13 gi|336254706|ref|YP_004597813.1| - 3.6 8.1 26.5 0.14 12.5 1.5 5.1 3 1 4 7 7 4 0 Lipoprotein leucine-zipper DivIC PF04977.15 gi|336254706|ref|YP_004597813.1| - 4 7.3 13.6 0.68 9.7 0.1 4.5 2 1 4 6 6 5 0 Septum formation initiator CorA PF01544.18 gi|336254706|ref|YP_004597813.1| - 5.1 6.3 14.0 1.9 7.7 4.5 2.5 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein Bacillus_HBL PF05791.11 gi|336254706|ref|YP_004597813.1| - 5.4 6.8 5.7 4.6 7.0 1.4 2.3 1 1 2 3 3 3 0 Bacillus haemolytic enterotoxin (HBL) Csm1_N PF18504.1 gi|336254706|ref|YP_004597813.1| - 5.7 7.4 10.2 16 5.9 0.7 3.9 2 1 1 4 4 3 0 Csm1 N-terminal domain DASH_Dad2 PF08654.10 gi|336254706|ref|YP_004597813.1| - 5.9 7.4 12.7 2.8 8.4 0.1 4.5 2 1 3 5 5 4 0 DASH complex subunit Dad2 Syntaxin-6_N PF09177.11 gi|336254706|ref|YP_004597813.1| - 7.6 7.2 17.3 4.3e+02 1.5 0.4 3.8 1 1 1 2 2 2 0 Syntaxin 6, N-terminal JIP_LZII PF16471.5 gi|336254706|ref|YP_004597813.1| - 8.1 6.7 16.8 15 5.8 0.4 4.3 2 1 1 4 4 3 0 JNK-interacting protein leucine zipper II HisG PF01634.18 gi|336254707|ref|YP_004597814.1| - 0.077 13.0 0.0 0.1 12.5 0.0 1.3 1 0 0 1 1 1 0 ATP phosphoribosyltransferase Lambda_CIII PF02061.16 gi|336254707|ref|YP_004597814.1| - 0.096 12.8 0.3 0.3 11.2 0.1 1.9 2 0 0 2 2 2 0 Lambda Phage CIII HTH_20 PF12840.7 gi|336254709|ref|YP_004597816.1| - 1.3e-11 44.4 0.1 2.5e-11 43.5 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|336254709|ref|YP_004597816.1| - 7.7e-10 38.5 0.0 1.3e-09 37.7 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|336254709|ref|YP_004597816.1| - 3.9e-05 23.5 0.0 5.9e-05 22.9 0.0 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|336254709|ref|YP_004597816.1| - 0.00016 21.5 0.0 0.00025 20.9 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|336254709|ref|YP_004597816.1| - 0.00091 19.1 0.0 0.0016 18.3 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|336254709|ref|YP_004597816.1| - 0.0029 17.1 0.0 0.0059 16.2 0.0 1.4 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|336254709|ref|YP_004597816.1| - 0.0031 17.3 0.1 0.0061 16.3 0.1 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_12 PF08461.10 gi|336254709|ref|YP_004597816.1| - 0.015 15.3 0.5 0.026 14.5 0.1 1.6 2 0 0 2 2 2 0 Ribonuclease R winged-helix domain Replic_Relax PF13814.6 gi|336254709|ref|YP_004597816.1| - 0.036 14.1 0.0 0.049 13.7 0.0 1.2 1 0 0 1 1 1 0 Replication-relaxation TFIIE_alpha PF02002.17 gi|336254709|ref|YP_004597816.1| - 0.04 13.8 0.0 0.055 13.3 0.0 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit BBP2_2 PF10082.9 gi|336254709|ref|YP_004597816.1| - 0.044 12.6 0.0 0.053 12.4 0.0 1.1 1 0 0 1 1 1 0 Putative beta-barrel porin 2 HTH_27 PF13463.6 gi|336254709|ref|YP_004597816.1| - 0.058 13.9 0.0 0.11 13.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_34 PF13601.6 gi|336254709|ref|YP_004597816.1| - 0.13 12.5 0.0 0.17 12.1 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain Phage_integrase PF00589.22 gi|336254710|ref|YP_004597817.1| - 8.2e-16 58.3 0.0 1.6e-15 57.3 0.0 1.4 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.17 gi|336254710|ref|YP_004597817.1| - 1.7e-08 34.6 0.7 4.3e-08 33.3 0.7 1.7 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 gi|336254710|ref|YP_004597817.1| - 1.7e-05 25.2 0.6 4.2e-05 23.9 0.6 1.6 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_integr_3 PF16795.5 gi|336254710|ref|YP_004597817.1| - 0.043 13.7 0.0 0.1 12.5 0.0 1.6 1 0 0 1 1 1 0 Archaeal phage integrase SF3A3 PF16837.5 gi|336254710|ref|YP_004597817.1| - 0.065 13.8 1.3 2.6 8.6 1.3 2.4 1 1 0 1 1 1 0 Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9 Hydantoinase_B PF02538.14 gi|336254711|ref|YP_004597818.1| - 0.01 14.3 0.2 0.01 14.3 0.2 1.1 1 0 0 1 1 1 1 Hydantoinase B/oxoprolinase DUF2064 PF09837.9 gi|336254711|ref|YP_004597818.1| - 0.019 14.8 1.1 0.076 12.8 1.1 1.8 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2064) zf-C2HC_2 PF13913.6 gi|336254712|ref|YP_004597819.1| - 0.0015 18.4 2.9 0.072 13.0 0.1 2.4 2 0 0 2 2 2 1 zinc-finger of a C2HC-type zf-C2H2 PF00096.26 gi|336254712|ref|YP_004597819.1| - 0.0042 17.5 7.8 0.11 12.9 0.3 3.2 3 0 0 3 3 3 1 Zinc finger, C2H2 type zf-C2H2_6 PF13912.6 gi|336254712|ref|YP_004597819.1| - 0.0092 16.0 9.2 0.48 10.5 0.1 2.8 3 0 0 3 3 3 2 C2H2-type zinc finger HNH_5 PF14279.6 gi|336254712|ref|YP_004597819.1| - 0.027 14.3 3.4 0.66 9.9 0.7 2.3 2 0 0 2 2 2 0 HNH endonuclease zf-C2H2_jaz PF12171.8 gi|336254712|ref|YP_004597819.1| - 0.064 13.6 3.7 0.86 10.0 0.5 2.5 2 1 0 2 2 2 0 Zinc-finger double-stranded RNA-binding FYVE PF01363.21 gi|336254712|ref|YP_004597819.1| - 0.07 13.3 3.4 0.088 13.0 3.4 1.3 1 0 0 1 1 1 0 FYVE zinc finger zf-C2H2_4 PF13894.6 gi|336254712|ref|YP_004597819.1| - 0.088 13.7 7.8 1 10.4 1.1 2.9 3 0 0 3 3 3 0 C2H2-type zinc finger DZR PF12773.7 gi|336254712|ref|YP_004597819.1| - 0.11 12.5 7.1 1 9.4 7.1 2.0 1 1 0 1 1 1 0 Double zinc ribbon zf_UBZ PF18439.1 gi|336254712|ref|YP_004597819.1| - 0.14 11.7 6.0 0.63 9.7 0.2 2.7 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger Elf1 PF05129.13 gi|336254712|ref|YP_004597819.1| - 0.19 11.8 4.5 2.2 8.4 3.8 2.1 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like zf-HIT PF04438.16 gi|336254712|ref|YP_004597819.1| - 0.24 11.3 4.0 9.2 6.2 0.2 3.1 3 0 0 3 3 3 0 HIT zinc finger Rhodanese_C PF12368.8 gi|336254712|ref|YP_004597819.1| - 0.31 11.5 7.2 10 6.6 7.9 2.1 1 1 1 2 2 2 0 Rhodanase C-terminal zf-H2C2_2 PF13465.6 gi|336254712|ref|YP_004597819.1| - 0.62 10.6 4.3 32 5.2 0.1 3.2 3 0 0 3 3 3 0 Zinc-finger double domain DUF983 PF06170.12 gi|336254712|ref|YP_004597819.1| - 1.5 9.3 3.0 9.4 6.7 0.4 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF983) C1_2 PF03107.16 gi|336254712|ref|YP_004597819.1| - 1.5 9.2 9.3 0.12 12.7 2.9 2.0 1 1 1 2 2 2 0 C1 domain Lyase_1 PF00206.20 gi|336254713|ref|YP_004597820.1| - 1.2e-110 369.8 0.3 1.7e-110 369.3 0.3 1.2 1 0 0 1 1 1 1 Lyase FumaraseC_C PF10415.9 gi|336254713|ref|YP_004597820.1| - 9.8e-23 80.3 2.8 1.3e-22 80.0 0.5 2.4 2 0 0 2 2 2 1 Fumarase C C-terminus SBP_bac_8 PF13416.6 gi|336254714|ref|YP_004597821.1| - 2.2e-20 73.6 2.2 2.9e-20 73.2 2.2 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.9 gi|336254714|ref|YP_004597821.1| - 0.008 16.0 7.9 0.019 14.8 7.9 1.7 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_1 PF00528.22 gi|336254715|ref|YP_004597822.1| - 8.4e-20 71.3 17.4 8.4e-20 71.3 17.4 2.3 1 1 1 2 2 2 2 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|336254716|ref|YP_004597823.1| - 2.7e-15 56.6 15.8 5.2e-15 55.7 15.8 1.5 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|336254717|ref|YP_004597824.1| - 3e-33 115.2 0.0 5.1e-33 114.5 0.0 1.4 1 0 0 1 1 1 1 ABC transporter OB_MalK PF17912.1 gi|336254717|ref|YP_004597824.1| - 9.6e-10 39.2 0.0 4.2e-09 37.1 0.0 2.2 1 0 0 1 1 1 1 MalK OB fold domain TOBE_2 PF08402.10 gi|336254717|ref|YP_004597824.1| - 7.1e-07 29.3 0.9 2.4e-05 24.4 0.5 3.0 2 1 0 2 2 2 1 TOBE domain AAA_21 PF13304.6 gi|336254717|ref|YP_004597824.1| - 7.1e-07 29.3 0.0 0.013 15.4 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|336254717|ref|YP_004597824.1| - 0.00015 21.3 0.3 0.003 17.0 0.3 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain Rad17 PF03215.15 gi|336254717|ref|YP_004597824.1| - 0.0011 18.9 0.0 0.0018 18.2 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_22 PF13401.6 gi|336254717|ref|YP_004597824.1| - 0.0012 19.2 0.0 0.0036 17.6 0.0 1.7 2 0 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 gi|336254717|ref|YP_004597824.1| - 0.0013 18.6 0.0 0.0029 17.5 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase CysA_C_terminal PF17850.1 gi|336254717|ref|YP_004597824.1| - 0.0018 18.8 1.8 0.0069 16.9 0.2 2.9 3 0 0 3 3 2 1 CysA C-terminal regulatory domain AAA_15 PF13175.6 gi|336254717|ref|YP_004597824.1| - 0.0035 17.1 0.0 0.009 15.8 0.0 1.6 2 0 0 2 2 2 1 AAA ATPase domain AAA_16 PF13191.6 gi|336254717|ref|YP_004597824.1| - 0.0038 17.6 0.5 0.01 16.2 0.5 1.8 1 1 0 1 1 1 1 AAA ATPase domain TOBE PF03459.17 gi|336254717|ref|YP_004597824.1| - 0.011 16.0 1.3 0.14 12.5 0.4 2.9 2 1 0 2 2 1 0 TOBE domain AAA_29 PF13555.6 gi|336254717|ref|YP_004597824.1| - 0.015 15.0 0.0 0.036 13.8 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA PF00004.29 gi|336254717|ref|YP_004597824.1| - 0.019 15.4 0.0 0.14 12.6 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.6 gi|336254717|ref|YP_004597824.1| - 0.032 14.8 0.1 0.12 12.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain Cytidylate_kin PF02224.18 gi|336254717|ref|YP_004597824.1| - 0.049 13.3 0.2 0.21 11.3 0.2 1.9 1 1 0 1 1 1 0 Cytidylate kinase MIT_C PF16565.5 gi|336254717|ref|YP_004597824.1| - 0.055 13.5 0.0 0.11 12.5 0.0 1.4 1 0 0 1 1 1 0 Phospholipase D-like domain at C-terminus of MIT AAA_25 PF13481.6 gi|336254717|ref|YP_004597824.1| - 0.063 12.8 0.1 0.69 9.4 0.0 2.5 2 1 0 2 2 2 0 AAA domain PhoH PF02562.16 gi|336254717|ref|YP_004597824.1| - 0.063 12.7 0.0 3.5 7.0 0.0 2.2 2 0 0 2 2 2 0 PhoH-like protein AAA_33 PF13671.6 gi|336254717|ref|YP_004597824.1| - 0.16 12.1 0.2 0.33 11.1 0.2 1.8 1 1 0 1 1 1 0 AAA domain DUF4013 PF13197.6 gi|336254718|ref|YP_004597825.1| - 1.6e-07 31.4 12.8 1.6e-07 31.4 12.8 2.4 1 1 1 2 2 2 1 Protein of unknown function (DUF4013) bPH_2 PF03703.14 gi|336254719|ref|YP_004597826.1| - 1.2e-51 172.8 3.3 1.1e-20 73.6 0.3 3.3 3 0 0 3 3 3 3 Bacterial PH domain bPH_4 PF06713.11 gi|336254719|ref|YP_004597826.1| - 4.6e-06 26.6 0.0 0.0096 16.0 0.0 3.1 3 0 0 3 3 3 2 Bacterial PH domain bPH_3 PF14470.6 gi|336254719|ref|YP_004597826.1| - 0.0078 16.5 0.0 4.3 7.8 0.0 2.3 2 0 0 2 2 2 2 Bacterial PH domain bPH_5 PF10882.8 gi|336254719|ref|YP_004597826.1| - 0.014 15.5 0.0 2.9 8.0 0.0 2.6 3 0 0 3 3 3 0 Bacterial PH domain NuDC PF16273.5 gi|336254719|ref|YP_004597826.1| - 0.36 11.4 2.9 0.73 10.4 2.9 1.4 1 0 0 1 1 1 0 Nuclear distribution C domain Trypan_PARP PF05887.11 gi|336254719|ref|YP_004597826.1| - 1.3 9.0 7.7 2.6 8.0 7.7 1.5 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) bPH_2 PF03703.14 gi|336254720|ref|YP_004597827.1| - 4.4e-14 52.4 0.0 6.4e-14 51.9 0.0 1.2 1 0 0 1 1 1 1 Bacterial PH domain Mntp PF02659.15 gi|336254720|ref|YP_004597827.1| - 0.041 13.6 2.7 0.057 13.2 2.1 1.5 1 1 1 2 2 2 0 Putative manganese efflux pump Phage_r1t_holin PF16945.5 gi|336254720|ref|YP_004597827.1| - 0.9 9.8 8.9 7 6.9 6.2 2.3 2 0 0 2 2 2 0 Putative lactococcus lactis phage r1t holin BolA PF01722.18 gi|336254721|ref|YP_004597828.1| - 2.3e-19 69.5 0.3 2.7e-19 69.2 0.3 1.1 1 0 0 1 1 1 1 BolA-like protein NifU PF01106.17 gi|336254722|ref|YP_004597829.1| - 1.2e-10 41.3 0.0 1.6e-10 41.0 0.0 1.3 1 0 0 1 1 1 1 NifU-like domain PSK_trans_fac PF07704.11 gi|336254723|ref|YP_004597830.1| - 1 10.2 5.1 4.2 8.2 0.1 2.9 3 0 0 3 3 3 0 Rv0623-like transcription factor MEDS PF14417.6 gi|336254724|ref|YP_004597831.1| - 1.8e-52 177.4 1.3 5.6e-52 175.8 0.1 2.4 2 1 0 2 2 2 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain HATPase_c PF02518.26 gi|336254724|ref|YP_004597831.1| - 3.7e-26 91.8 0.0 5.8e-26 91.2 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|336254724|ref|YP_004597831.1| - 5.6e-11 42.3 2.5 1.1e-10 41.4 0.2 2.6 2 1 0 2 2 2 1 His Kinase A (phospho-acceptor) domain ATPase PF06745.13 gi|336254724|ref|YP_004597831.1| - 6.5e-05 22.4 0.0 0.00013 21.4 0.0 1.4 1 0 0 1 1 1 1 KaiC GAF_2 PF13185.6 gi|336254724|ref|YP_004597831.1| - 0.0002 21.6 0.1 0.00083 19.7 0.1 2.1 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.6 gi|336254724|ref|YP_004597831.1| - 0.0038 17.6 0.0 0.029 14.7 0.0 2.3 1 1 0 1 1 1 1 GAF domain HATPase_c_5 PF14501.6 gi|336254724|ref|YP_004597831.1| - 0.0072 16.2 0.0 0.017 15.0 0.0 1.6 1 0 0 1 1 1 1 GHKL domain GAF PF01590.26 gi|336254724|ref|YP_004597831.1| - 0.011 16.3 0.0 0.044 14.4 0.0 2.1 1 1 0 1 1 1 0 GAF domain PEP-utilisers_N PF05524.13 gi|336254724|ref|YP_004597831.1| - 0.12 12.6 0.9 35 4.6 0.5 3.0 2 0 0 2 2 2 0 PEP-utilising enzyme, N-terminal PAS_4 PF08448.10 gi|336254725|ref|YP_004597832.1| - 2.3e-56 188.8 18.1 6.8e-13 48.8 0.3 5.6 5 0 0 5 5 5 5 PAS fold PAS_9 PF13426.7 gi|336254725|ref|YP_004597832.1| - 4.3e-45 152.2 0.0 3.2e-14 53.1 0.0 5.4 5 0 0 5 5 5 5 PAS domain PAS PF00989.25 gi|336254725|ref|YP_004597832.1| - 6.9e-41 138.8 1.5 5.2e-14 52.2 0.0 5.8 5 1 1 6 6 6 5 PAS fold HATPase_c PF02518.26 gi|336254725|ref|YP_004597832.1| - 5.2e-27 94.6 0.0 1.5e-26 93.1 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 gi|336254725|ref|YP_004597832.1| - 4.3e-23 80.8 9.8 9.5e-08 31.9 0.1 5.6 5 0 0 5 5 5 3 PAS domain PAS_3 PF08447.12 gi|336254725|ref|YP_004597832.1| - 2.5e-17 62.9 1.7 2.6e-06 27.6 0.1 5.8 6 0 0 6 6 6 3 PAS fold PAS_7 PF12860.7 gi|336254725|ref|YP_004597832.1| - 2.8e-12 46.8 1.6 0.0023 18.1 0.0 6.0 5 1 0 5 5 5 3 PAS fold HisKA PF00512.25 gi|336254725|ref|YP_004597832.1| - 1.5e-10 40.9 2.1 3.6e-10 39.7 0.1 2.8 2 1 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.6 gi|336254725|ref|YP_004597832.1| - 0.00075 19.4 0.0 0.0014 18.5 0.0 1.4 1 0 0 1 1 1 1 GHKL domain PAS_10 PF13596.6 gi|336254725|ref|YP_004597832.1| - 0.0015 19.1 0.0 2.4 8.8 0.0 4.0 4 1 0 4 4 4 1 PAS domain HATPase_c_2 PF13581.6 gi|336254725|ref|YP_004597832.1| - 0.0065 16.4 0.0 0.026 14.5 0.1 2.0 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain ApoLp-III PF07464.11 gi|336254725|ref|YP_004597832.1| - 0.0082 16.2 0.7 0.48 10.5 0.0 2.4 2 0 0 2 2 2 1 Apolipophorin-III precursor (apoLp-III) Wtap PF17098.5 gi|336254725|ref|YP_004597832.1| - 0.13 12.1 2.6 12 5.8 0.8 2.9 3 0 0 3 3 3 0 WTAP/Mum2p family MLTR_LBD PF17765.1 gi|336254725|ref|YP_004597832.1| - 0.21 11.7 3.6 1.9 8.6 0.0 3.5 4 0 0 4 4 4 0 MmyB-like transcription regulator ligand binding domain bZIP_2 PF07716.15 gi|336254725|ref|YP_004597832.1| - 6.6 6.9 8.0 4.1 7.5 4.0 2.5 2 0 0 2 2 2 0 Basic region leucine zipper tRNA-synt_1e PF01406.19 gi|336254726|ref|YP_004597833.1| - 4.5e-107 357.9 0.1 1.1e-105 353.3 0.1 2.1 1 1 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain DALR_2 PF09190.11 gi|336254726|ref|YP_004597833.1| - 8.5e-16 58.2 1.6 7.7e-15 55.1 0.4 2.4 1 1 1 2 2 2 1 DALR domain tRNA-synt_1g PF09334.11 gi|336254726|ref|YP_004597833.1| - 3e-11 42.7 0.0 0.00013 20.9 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1f PF01921.18 gi|336254726|ref|YP_004597833.1| - 7.8e-10 38.2 0.0 7.5e-06 25.1 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1 PF00133.22 gi|336254726|ref|YP_004597833.1| - 0.00061 18.2 0.0 0.004 15.5 0.0 2.2 3 0 0 3 3 3 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1d PF00750.19 gi|336254726|ref|YP_004597833.1| - 0.0015 17.5 0.1 0.017 14.1 0.0 2.5 3 0 0 3 3 3 1 tRNA synthetases class I (R) FTO_CTD PF12934.7 gi|336254726|ref|YP_004597833.1| - 0.024 14.4 0.0 0.044 13.6 0.0 1.4 1 0 0 1 1 1 0 FTO C-terminal domain UVR PF02151.19 gi|336254726|ref|YP_004597833.1| - 0.028 14.2 0.4 0.028 14.2 0.4 2.1 2 0 0 2 2 2 0 UvrB/uvrC motif tRNA-synt_1c PF00749.21 gi|336254726|ref|YP_004597833.1| - 0.057 12.3 0.0 0.15 10.9 0.0 1.7 1 0 0 1 1 1 0 tRNA synthetases class I (E and Q), catalytic domain SPP PF06550.11 gi|336254727|ref|YP_004597834.1| - 6.4e-89 298.2 15.4 8.1e-89 297.8 15.4 1.0 1 0 0 1 1 1 1 Signal-peptide peptidase, presenilin aspartyl protease Peptidase_A22B PF04258.13 gi|336254727|ref|YP_004597834.1| - 3e-05 23.7 9.9 0.0014 18.3 5.1 2.6 2 1 0 2 2 2 2 Signal peptide peptidase Presenilin PF01080.17 gi|336254727|ref|YP_004597834.1| - 0.00014 20.7 8.8 0.11 11.2 7.2 2.3 2 0 0 2 2 2 2 Presenilin DUF1700 PF08006.11 gi|336254727|ref|YP_004597834.1| - 0.082 12.4 2.8 2.4 7.7 1.6 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1700) Gar1 PF04410.14 gi|336254728|ref|YP_004597835.1| - 5.3e-05 23.0 0.0 5.6e-05 22.9 0.0 1.2 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region SRP19 PF01922.17 gi|336254729|ref|YP_004597836.1| - 3.1e-25 89.0 0.0 3.6e-25 88.7 0.0 1.1 1 0 0 1 1 1 1 SRP19 protein HMA PF00403.26 gi|336254729|ref|YP_004597836.1| - 0.12 12.9 0.1 19 5.8 0.0 2.2 2 0 0 2 2 2 0 Heavy-metal-associated domain Peripla_BP_2 PF01497.18 gi|336254730|ref|YP_004597837.1| - 1.7e-23 83.4 3.4 1.7e-23 83.4 3.4 1.5 2 0 0 2 2 2 1 Periplasmic binding protein PGF-CTERM PF18204.1 gi|336254730|ref|YP_004597837.1| - 0.0032 17.4 5.4 0.0073 16.2 5.4 1.7 1 0 0 1 1 1 1 PGF-CTERM motif Pilin_N PF07790.11 gi|336254730|ref|YP_004597837.1| - 0.076 13.9 0.1 0.26 12.2 0.1 1.9 1 0 0 1 1 1 0 Archaeal Type IV pilin, N-terminal DUF2457 PF10446.9 gi|336254730|ref|YP_004597837.1| - 0.95 8.5 13.4 1.7 7.7 13.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2457) PT-VENN PF04829.13 gi|336254730|ref|YP_004597837.1| - 2.1 8.5 8.8 1.5 8.9 5.3 2.4 2 0 0 2 2 2 0 Pre-toxin domain with VENN motif FecCD PF01032.18 gi|336254731|ref|YP_004597838.1| - 2e-94 316.1 30.9 2.5e-94 315.8 30.9 1.0 1 0 0 1 1 1 1 FecCD transport family ABC-3 PF00950.17 gi|336254731|ref|YP_004597838.1| - 0.00029 20.4 17.2 0.00061 19.4 17.2 1.7 1 1 0 1 1 1 1 ABC 3 transport family DUF3482 PF11981.8 gi|336254731|ref|YP_004597838.1| - 5.3 6.4 5.1 11 5.3 5.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3482) ABC_tran PF00005.27 gi|336254732|ref|YP_004597839.1| - 6.2e-35 120.7 0.0 1.2e-34 119.8 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|336254732|ref|YP_004597839.1| - 2.5e-08 34.1 0.7 4e-05 23.6 0.1 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|336254732|ref|YP_004597839.1| - 0.00018 21.1 0.1 0.026 14.0 0.1 2.3 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|336254732|ref|YP_004597839.1| - 0.00022 21.8 0.0 0.0003 21.4 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|336254732|ref|YP_004597839.1| - 0.0007 20.0 1.5 0.0013 19.1 0.5 2.1 2 1 0 2 2 2 1 AAA ATPase domain Zeta_toxin PF06414.12 gi|336254732|ref|YP_004597839.1| - 0.0019 17.5 0.0 0.0045 16.3 0.0 1.7 1 0 0 1 1 1 1 Zeta toxin AAA PF00004.29 gi|336254732|ref|YP_004597839.1| - 0.004 17.6 0.0 0.012 16.0 0.0 1.8 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 gi|336254732|ref|YP_004597839.1| - 0.0056 16.4 0.1 0.012 15.4 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|336254732|ref|YP_004597839.1| - 0.0061 16.3 0.0 0.017 14.9 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|336254732|ref|YP_004597839.1| - 0.015 15.6 0.1 0.051 13.9 0.1 1.9 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|336254732|ref|YP_004597839.1| - 0.023 14.4 0.0 0.26 10.9 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain cobW PF02492.19 gi|336254732|ref|YP_004597839.1| - 0.034 13.7 0.3 0.11 12.1 0.1 2.0 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain RsgA_GTPase PF03193.16 gi|336254732|ref|YP_004597839.1| - 0.039 13.9 0.0 0.12 12.3 0.0 1.9 2 0 0 2 2 2 0 RsgA GTPase NTPase_1 PF03266.15 gi|336254732|ref|YP_004597839.1| - 0.05 13.5 0.0 0.15 11.9 0.0 1.8 2 0 0 2 2 2 0 NTPase AAA_33 PF13671.6 gi|336254732|ref|YP_004597839.1| - 0.068 13.3 1.2 0.53 10.4 1.2 2.6 1 1 0 1 1 1 0 AAA domain DUF3584 PF12128.8 gi|336254732|ref|YP_004597839.1| - 0.069 10.7 0.1 0.092 10.3 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) NACHT PF05729.12 gi|336254732|ref|YP_004597839.1| - 0.086 12.8 0.0 0.23 11.4 0.0 1.7 1 0 0 1 1 1 0 NACHT domain TsaE PF02367.17 gi|336254732|ref|YP_004597839.1| - 0.091 12.8 0.0 0.16 12.0 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE MMR_HSR1 PF01926.23 gi|336254732|ref|YP_004597839.1| - 0.11 12.6 0.0 0.25 11.5 0.0 1.6 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_27 PF13514.6 gi|336254732|ref|YP_004597839.1| - 0.12 12.0 0.0 0.22 11.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|336254732|ref|YP_004597839.1| - 0.12 11.6 0.0 0.19 10.9 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_5 PF07728.14 gi|336254732|ref|YP_004597839.1| - 0.14 12.2 0.0 0.41 10.7 0.0 1.8 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_24 PF13479.6 gi|336254732|ref|YP_004597839.1| - 0.2 11.4 0.0 0.39 10.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain MukB PF04310.12 gi|336254732|ref|YP_004597839.1| - 0.22 11.3 0.2 0.8 9.5 0.1 1.9 2 0 0 2 2 2 0 MukB N-terminal Peripla_BP_2 PF01497.18 gi|336254733|ref|YP_004597840.1| - 2.9e-16 59.8 0.0 6.1e-16 58.7 0.0 1.5 2 0 0 2 2 2 1 Periplasmic binding protein TAT_signal PF10518.9 gi|336254733|ref|YP_004597840.1| - 0.17 11.8 0.0 0.28 11.1 0.0 1.3 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF3558 PF12079.8 gi|336254733|ref|YP_004597840.1| - 0.32 11.0 2.1 0.51 10.3 2.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3558) GatB_N PF02934.15 gi|336254734|ref|YP_004597841.1| - 1.2e-64 218.4 0.0 1.9e-64 217.7 0.0 1.2 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|336254734|ref|YP_004597841.1| - 1.6e-24 86.5 0.0 3.2e-24 85.5 0.0 1.5 1 0 0 1 1 1 1 GatB domain GAD PF02938.14 gi|336254734|ref|YP_004597841.1| - 7.9e-16 58.1 0.0 1.5e-15 57.2 0.0 1.5 1 0 0 1 1 1 1 GAD domain YqeY PF09424.10 gi|336254734|ref|YP_004597841.1| - 0.00067 19.8 0.3 0.0018 18.4 0.3 1.7 1 0 0 1 1 1 1 Yqey-like protein PsbQ PF05757.11 gi|336254735|ref|YP_004597842.1| - 0.0071 16.1 0.0 0.0084 15.9 0.0 1.1 1 0 0 1 1 1 1 Oxygen evolving enhancer protein 3 (PsbQ) TAT_signal PF10518.9 gi|336254735|ref|YP_004597842.1| - 0.055 13.3 0.2 0.1 12.5 0.2 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Big_9 PF17963.1 gi|336254735|ref|YP_004597842.1| - 0.082 13.7 2.3 0.71 10.6 0.4 2.1 1 1 1 2 2 2 0 Bacterial Ig domain DUF5429 PF17494.2 gi|336254735|ref|YP_004597842.1| - 0.16 12.0 0.1 0.23 11.5 0.1 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5429) AsnC_trans_reg PF01037.21 gi|336254736|ref|YP_004597843.1| - 3.1e-11 43.1 0.5 5.3e-11 42.3 0.5 1.3 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|336254736|ref|YP_004597843.1| - 4e-07 29.5 0.3 1.1e-06 28.0 0.3 1.8 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|336254736|ref|YP_004597843.1| - 3.5e-06 26.7 0.0 6.8e-06 25.8 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|336254736|ref|YP_004597843.1| - 0.00011 22.2 0.0 0.00043 20.3 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|336254736|ref|YP_004597843.1| - 0.00036 20.3 0.0 0.00062 19.6 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|336254736|ref|YP_004597843.1| - 0.0017 18.2 0.2 0.004 17.0 0.0 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|336254736|ref|YP_004597843.1| - 0.023 14.6 0.0 0.064 13.2 0.0 1.8 2 0 0 2 2 2 0 MarR family B-block_TFIIIC PF04182.12 gi|336254736|ref|YP_004597843.1| - 0.082 13.1 0.0 0.15 12.3 0.0 1.3 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_27 PF13463.6 gi|336254736|ref|YP_004597843.1| - 0.083 13.4 0.1 0.25 11.9 0.1 1.8 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_AsnC-type PF13404.6 gi|336254736|ref|YP_004597843.1| - 0.096 12.5 0.0 0.26 11.2 0.0 1.8 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_23 PF13384.6 gi|336254736|ref|YP_004597843.1| - 0.11 12.3 0.0 0.62 9.9 0.0 2.1 2 0 0 2 2 2 0 Homeodomain-like domain Nfu_N PF08712.11 gi|336254736|ref|YP_004597843.1| - 0.12 12.5 0.0 0.18 11.9 0.0 1.4 1 0 0 1 1 1 0 Scaffold protein Nfu/NifU N terminal EamA PF00892.20 gi|336254737|ref|YP_004597844.1| - 1.2e-37 129.1 35.2 3.5e-19 69.3 10.4 2.0 2 0 0 2 2 2 2 EamA-like transporter family Amj PF10997.8 gi|336254737|ref|YP_004597844.1| - 0.0088 15.4 2.8 0.014 14.8 2.3 1.6 1 1 0 1 1 1 1 Alternate to MurJ MFS_1 PF07690.16 gi|336254738|ref|YP_004597845.1| - 1e-24 87.1 67.8 2.3e-15 56.4 32.2 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|336254738|ref|YP_004597845.1| - 0.019 13.8 14.3 0.041 12.8 13.7 1.9 1 1 0 1 1 1 0 MFS_1 like family SpoU_methylase PF00588.19 gi|336254740|ref|YP_004597847.1| - 1.6e-28 99.7 0.0 2.1e-28 99.3 0.0 1.2 1 0 0 1 1 1 1 SpoU rRNA Methylase family Cdc6_C PF09079.11 gi|336254741|ref|YP_004597848.1| - 2.5e-19 69.1 0.1 5.1e-19 68.0 0.1 1.6 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|336254741|ref|YP_004597848.1| - 3.2e-13 50.1 0.0 1.1e-12 48.4 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|336254741|ref|YP_004597848.1| - 1.9e-07 31.6 0.1 1.9e-07 31.6 0.1 2.6 2 2 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|336254741|ref|YP_004597848.1| - 5.4e-05 23.6 0.0 0.00019 21.8 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|336254741|ref|YP_004597848.1| - 0.00025 21.1 0.3 0.0024 17.9 0.3 2.4 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.26 gi|336254741|ref|YP_004597848.1| - 0.00072 19.3 0.2 0.0023 17.7 0.0 1.9 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_32 PF13654.6 gi|336254741|ref|YP_004597848.1| - 0.00092 18.1 0.6 0.21 10.4 0.5 2.4 2 0 0 2 2 2 2 AAA domain DUF815 PF05673.13 gi|336254741|ref|YP_004597848.1| - 0.0015 17.8 0.0 0.0032 16.6 0.0 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF815) PhoH PF02562.16 gi|336254741|ref|YP_004597848.1| - 0.0034 16.9 0.0 0.13 11.7 0.0 2.3 2 0 0 2 2 2 1 PhoH-like protein ATP-synt_ab PF00006.25 gi|336254741|ref|YP_004597848.1| - 0.0038 16.9 0.0 0.0063 16.2 0.0 1.4 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain TniB PF05621.11 gi|336254741|ref|YP_004597848.1| - 0.005 16.3 0.0 0.024 14.1 0.0 2.0 2 0 0 2 2 2 1 Bacterial TniB protein PIF1 PF05970.14 gi|336254741|ref|YP_004597848.1| - 0.0056 15.9 0.1 0.026 13.7 0.0 2.0 2 0 0 2 2 2 1 PIF1-like helicase NB-ARC PF00931.22 gi|336254741|ref|YP_004597848.1| - 0.0096 15.1 0.0 0.018 14.3 0.0 1.5 1 0 0 1 1 1 1 NB-ARC domain DUF87 PF01935.17 gi|336254741|ref|YP_004597848.1| - 0.016 15.3 2.4 0.072 13.2 0.0 2.4 2 0 0 2 2 2 0 Helicase HerA, central domain AAA_assoc_2 PF16193.5 gi|336254741|ref|YP_004597848.1| - 0.034 14.5 1.5 0.1 13.0 0.7 2.1 1 1 1 2 2 2 0 AAA C-terminal domain PCP_red PF08369.10 gi|336254741|ref|YP_004597848.1| - 0.045 14.0 0.5 0.14 12.4 0.2 2.0 2 0 0 2 2 1 0 Proto-chlorophyllide reductase 57 kD subunit IstB_IS21 PF01695.17 gi|336254741|ref|YP_004597848.1| - 0.06 13.1 0.1 1.1 9.0 0.0 2.4 2 0 0 2 2 2 0 IstB-like ATP binding protein DEAD PF00270.29 gi|336254741|ref|YP_004597848.1| - 0.067 13.0 0.7 2.6 7.8 0.1 2.5 1 1 1 2 2 2 0 DEAD/DEAH box helicase Arf PF00025.21 gi|336254741|ref|YP_004597848.1| - 0.082 12.4 0.0 0.14 11.6 0.0 1.3 1 0 0 1 1 1 0 ADP-ribosylation factor family ResIII PF04851.15 gi|336254741|ref|YP_004597848.1| - 0.098 12.7 0.1 0.24 11.4 0.0 1.8 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit AAA_7 PF12775.7 gi|336254741|ref|YP_004597848.1| - 0.13 11.8 0.0 0.26 10.8 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region RNA_helicase PF00910.22 gi|336254741|ref|YP_004597848.1| - 0.18 12.2 0.0 0.67 10.4 0.0 2.0 2 0 0 2 2 2 0 RNA helicase Pterin_bind PF00809.22 gi|336254742|ref|YP_004597849.1| - 7.3e-41 140.4 0.0 1e-40 140.0 0.0 1.2 1 0 0 1 1 1 1 Pterin binding enzyme MAF_flag10 PF01973.18 gi|336254743|ref|YP_004597850.1| - 2.9e-21 75.9 0.0 3.6e-21 75.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF115 TrkA_N PF02254.18 gi|336254743|ref|YP_004597850.1| - 0.015 15.6 0.1 0.054 13.8 0.0 1.9 1 1 1 2 2 2 0 TrkA-N domain Polysacc_deac_1 PF01522.21 gi|336254743|ref|YP_004597850.1| - 0.14 12.1 0.0 0.25 11.3 0.0 1.5 1 0 0 1 1 1 0 Polysaccharide deacetylase zinc_ribbon_15 PF17032.5 gi|336254744|ref|YP_004597851.1| - 0.00091 19.9 0.5 0.0011 19.7 0.5 1.2 1 0 0 1 1 1 1 zinc-ribbon family zinc_ribbon_2 PF13240.6 gi|336254744|ref|YP_004597851.1| - 0.0079 15.9 5.7 0.011 15.5 5.7 1.2 1 0 0 1 1 1 1 zinc-ribbon domain NRDD PF13597.6 gi|336254744|ref|YP_004597851.1| - 0.086 11.6 1.2 0.076 11.8 1.2 1.1 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase HypA PF01155.19 gi|336254744|ref|YP_004597851.1| - 0.13 12.2 4.8 0.14 12.2 4.8 1.2 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-RRN7 PF11781.8 gi|336254744|ref|YP_004597851.1| - 0.46 10.2 6.6 0.72 9.6 0.8 2.2 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Zn-ribbon_8 PF09723.10 gi|336254744|ref|YP_004597851.1| - 0.52 10.5 7.1 2.5 8.3 7.2 1.9 1 1 1 2 2 2 0 Zinc ribbon domain Bac_luciferase PF00296.20 gi|336254745|ref|YP_004597852.1| - 3.5e-79 266.5 8.6 4.5e-79 266.1 8.6 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase Tubulin PF00091.25 gi|336254747|ref|YP_004597854.1| - 8.6e-27 94.6 0.0 1.6e-26 93.8 0.0 1.4 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.6 gi|336254747|ref|YP_004597854.1| - 0.023 13.9 0.2 0.053 12.7 0.2 1.5 1 1 0 1 1 1 0 Tubulin like DivIVA PF05103.13 gi|336254747|ref|YP_004597854.1| - 0.14 12.2 0.2 0.39 10.8 0.2 1.7 1 0 0 1 1 1 0 DivIVA protein SBP_bac_5 PF00496.22 gi|336254748|ref|YP_004597855.1| - 3.9e-38 131.4 0.0 1.1e-34 120.0 0.0 2.1 2 0 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 5 Middle PAP2_3 PF14378.6 gi|336254749|ref|YP_004597856.1| - 8.2e-21 74.6 9.9 8.2e-21 74.6 9.9 1.8 2 1 0 2 2 2 1 PAP2 superfamily PAP2 PF01569.21 gi|336254749|ref|YP_004597856.1| - 1.1e-11 44.7 5.1 1.1e-11 44.7 5.1 2.3 2 1 1 3 3 3 1 PAP2 superfamily Nucleos_tra2_N PF01773.20 gi|336254749|ref|YP_004597856.1| - 0.14 12.7 4.7 0.12 13.0 1.2 2.5 2 0 0 2 2 2 0 Na+ dependent nucleoside transporter N-terminus PAP2_C PF14360.6 gi|336254749|ref|YP_004597856.1| - 1.2 9.7 8.1 0.12 12.9 2.5 2.3 2 1 0 2 2 2 0 PAP2 superfamily C-terminal DUF2070 PF09843.9 gi|336254749|ref|YP_004597856.1| - 2.8 6.1 16.7 0.84 7.9 7.5 2.0 1 1 0 2 2 2 0 Predicted membrane protein (DUF2070) FAD_binding_7 PF03441.14 gi|336254750|ref|YP_004597857.1| - 4.2e-75 251.7 1.7 5.7e-75 251.2 1.7 1.2 1 0 0 1 1 1 1 FAD binding domain of DNA photolyase DNA_photolyase PF00875.18 gi|336254750|ref|YP_004597857.1| - 1.9e-40 138.6 0.6 1.5e-39 135.7 0.1 2.2 2 0 0 2 2 2 1 DNA photolyase HalOD1 PF18545.1 gi|336254751|ref|YP_004597858.1| - 2.2e-22 79.1 0.8 2.8e-22 78.7 0.8 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 CarboxypepD_reg PF13620.6 gi|336254752|ref|YP_004597859.1| - 3.3e-07 30.5 0.2 4.4e-07 30.1 0.2 1.2 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain DUF4198 PF10670.9 gi|336254752|ref|YP_004597859.1| - 0.00024 21.6 0.0 0.0003 21.3 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4198) Big_1 PF02369.16 gi|336254752|ref|YP_004597859.1| - 0.013 15.5 0.0 0.076 13.0 0.0 2.2 1 1 0 1 1 1 0 Bacterial Ig-like domain (group 1) MG4 PF17789.1 gi|336254752|ref|YP_004597859.1| - 0.094 12.9 0.0 0.12 12.5 0.0 1.1 1 0 0 1 1 1 0 Macroglobulin domain MG4 GFO_IDH_MocA PF01408.22 gi|336254753|ref|YP_004597860.1| - 1e-23 84.4 0.0 1.6e-23 83.8 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|336254753|ref|YP_004597860.1| - 1.7e-10 40.9 0.0 3.5e-10 39.9 0.0 1.7 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain 2-Hacid_dh_C PF02826.19 gi|336254753|ref|YP_004597860.1| - 6.5e-05 22.4 0.0 0.00011 21.6 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|336254753|ref|YP_004597860.1| - 0.00014 22.4 0.0 0.00037 21.0 0.0 1.7 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent CoA_binding PF02629.19 gi|336254753|ref|YP_004597860.1| - 0.0014 19.3 0.0 0.0027 18.3 0.0 1.5 1 0 0 1 1 1 1 CoA binding domain IlvN PF07991.12 gi|336254753|ref|YP_004597860.1| - 0.01 15.4 0.0 0.017 14.7 0.0 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_binding_2 PF03446.15 gi|336254753|ref|YP_004597860.1| - 0.011 15.9 0.0 0.027 14.7 0.0 1.6 1 1 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase ox_reductase_C PF08635.10 gi|336254753|ref|YP_004597860.1| - 0.099 12.3 0.0 0.19 11.4 0.0 1.4 1 0 0 1 1 1 0 Putative oxidoreductase C terminal domain ABC_tran PF00005.27 gi|336254754|ref|YP_004597861.1| - 3.2e-33 115.1 0.0 5.7e-33 114.3 0.0 1.4 1 0 0 1 1 1 1 ABC transporter OB_MalK PF17912.1 gi|336254754|ref|YP_004597861.1| - 1.7e-13 51.1 0.0 4.9e-13 49.7 0.0 1.8 1 0 0 1 1 1 1 MalK OB fold domain AAA_21 PF13304.6 gi|336254754|ref|YP_004597861.1| - 1.4e-06 28.3 0.0 0.025 14.4 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system CysA_C_terminal PF17850.1 gi|336254754|ref|YP_004597861.1| - 1e-05 26.0 0.6 5.6e-05 23.6 0.2 2.5 2 0 0 2 2 2 1 CysA C-terminal regulatory domain SMC_N PF02463.19 gi|336254754|ref|YP_004597861.1| - 8.2e-05 22.1 0.1 0.00037 20.0 0.1 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain TOBE_2 PF08402.10 gi|336254754|ref|YP_004597861.1| - 0.00014 22.0 0.1 0.0035 17.5 0.1 2.8 1 1 0 1 1 1 1 TOBE domain Rad17 PF03215.15 gi|336254754|ref|YP_004597861.1| - 0.0038 17.2 0.0 0.0056 16.6 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain RsgA_GTPase PF03193.16 gi|336254754|ref|YP_004597861.1| - 0.004 17.1 0.2 0.015 15.2 0.0 1.8 2 0 0 2 2 2 1 RsgA GTPase AAA_22 PF13401.6 gi|336254754|ref|YP_004597861.1| - 0.0049 17.2 0.0 0.013 15.8 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|336254754|ref|YP_004597861.1| - 0.0055 17.1 0.0 0.015 15.7 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|336254754|ref|YP_004597861.1| - 0.0084 15.8 0.0 0.025 14.3 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.6 gi|336254754|ref|YP_004597861.1| - 0.01 15.6 0.0 1.5 8.5 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain TOBE PF03459.17 gi|336254754|ref|YP_004597861.1| - 0.01 16.1 0.0 5.7 7.3 0.0 3.2 2 1 0 2 2 2 0 TOBE domain AAA_29 PF13555.6 gi|336254754|ref|YP_004597861.1| - 0.011 15.4 0.0 0.025 14.3 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain Zeta_toxin PF06414.12 gi|336254754|ref|YP_004597861.1| - 0.013 14.8 0.1 0.033 13.5 0.0 1.7 2 0 0 2 2 2 0 Zeta toxin AAA_33 PF13671.6 gi|336254754|ref|YP_004597861.1| - 0.035 14.3 0.4 0.098 12.8 0.4 1.9 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|336254754|ref|YP_004597861.1| - 0.036 14.1 0.1 0.097 12.7 0.0 1.8 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) RNA_helicase PF00910.22 gi|336254754|ref|YP_004597861.1| - 0.047 14.1 0.0 0.11 12.9 0.0 1.6 1 0 0 1 1 1 0 RNA helicase AAA PF00004.29 gi|336254754|ref|YP_004597861.1| - 0.068 13.6 0.5 0.16 12.4 0.5 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 gi|336254754|ref|YP_004597861.1| - 0.13 12.8 0.0 0.27 11.8 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|336254754|ref|YP_004597861.1| - 0.27 10.8 2.7 0.91 9.1 0.3 2.7 2 1 0 2 2 2 0 AAA domain BPD_transp_1 PF00528.22 gi|336254755|ref|YP_004597862.1| - 5.3e-11 42.6 20.9 5.3e-11 42.6 20.9 2.5 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|336254756|ref|YP_004597863.1| - 5.7e-16 58.8 21.4 5.7e-16 58.8 21.4 2.9 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component ThiW PF09512.10 gi|336254756|ref|YP_004597863.1| - 0.2 11.7 12.1 0.087 12.9 5.5 2.5 2 0 0 2 2 2 0 Thiamine-precursor transporter protein (ThiW) TraP PF07296.11 gi|336254756|ref|YP_004597863.1| - 0.3 10.2 3.1 1.3 8.2 0.3 2.2 2 0 0 2 2 2 0 TraP protein SBP_bac_8 PF13416.6 gi|336254757|ref|YP_004597864.1| - 4.4e-19 69.4 0.2 6.7e-19 68.8 0.2 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|336254757|ref|YP_004597864.1| - 4.9e-10 39.9 0.6 1.7e-09 38.1 0.6 1.8 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein Regulator_TrmB PF11495.8 gi|336254758|ref|YP_004597865.1| - 1e-66 224.5 0.7 1.4e-66 224.0 0.4 1.4 2 0 0 2 2 2 1 Archaeal transcriptional regulator TrmB TrmB PF01978.19 gi|336254758|ref|YP_004597865.1| - 1.2e-20 73.1 0.0 3.1e-20 71.8 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|336254758|ref|YP_004597865.1| - 1.5e-06 27.9 0.1 5.7e-06 26.1 0.1 1.9 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|336254758|ref|YP_004597865.1| - 5.8e-06 26.3 0.3 4e-05 23.6 0.1 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|336254758|ref|YP_004597865.1| - 5.2e-05 23.0 0.2 0.00019 21.2 0.1 2.0 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|336254758|ref|YP_004597865.1| - 0.00026 20.5 0.1 0.0055 16.2 0.0 2.7 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|336254758|ref|YP_004597865.1| - 0.00053 19.8 0.0 0.0037 17.1 0.0 2.2 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_CodY PF08222.11 gi|336254758|ref|YP_004597865.1| - 0.0022 17.5 0.0 0.0076 15.8 0.0 2.0 1 0 0 1 1 1 1 CodY helix-turn-helix domain Rrf2 PF02082.20 gi|336254758|ref|YP_004597865.1| - 0.0057 17.0 0.0 0.012 15.9 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator DUF2250 PF10007.9 gi|336254758|ref|YP_004597865.1| - 0.031 14.4 0.0 0.13 12.4 0.0 1.9 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) MarR PF01047.22 gi|336254758|ref|YP_004597865.1| - 0.062 13.2 0.0 0.15 12.0 0.0 1.6 1 0 0 1 1 1 0 MarR family HTH_Crp_2 PF13545.6 gi|336254758|ref|YP_004597865.1| - 0.075 13.0 0.0 0.18 11.8 0.0 1.7 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_9 PF08221.11 gi|336254758|ref|YP_004597865.1| - 0.11 12.6 0.0 0.26 11.4 0.0 1.5 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_37 PF13744.6 gi|336254758|ref|YP_004597865.1| - 0.13 12.3 0.0 0.4 10.7 0.0 1.8 2 0 0 2 2 1 0 Helix-turn-helix domain HTH_29 PF13551.6 gi|336254758|ref|YP_004597865.1| - 0.18 11.9 0.4 9.7 6.3 0.0 3.4 3 1 1 4 4 4 0 Winged helix-turn helix MS_channel PF00924.18 gi|336254759|ref|YP_004597866.1| - 3.3e-35 121.5 0.4 4.6e-35 121.0 0.4 1.1 1 0 0 1 1 1 1 Mechanosensitive ion channel TM_helix PF05552.12 gi|336254759|ref|YP_004597866.1| - 0.00082 19.3 2.8 0.00082 19.3 2.8 2.0 3 0 0 3 3 3 1 Conserved TM helix EI24 PF07264.11 gi|336254759|ref|YP_004597866.1| - 0.0036 17.6 1.3 0.01 16.1 1.2 1.7 1 1 1 2 2 2 1 Etoposide-induced protein 2.4 (EI24) DUF3611 PF12263.8 gi|336254759|ref|YP_004597866.1| - 0.068 13.1 5.8 0.11 12.4 5.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3611) IncE PF17627.2 gi|336254759|ref|YP_004597866.1| - 0.29 11.1 3.3 0.48 10.4 3.3 1.3 1 0 0 1 1 1 0 Inclusion membrane protein E Usp PF00582.26 gi|336254760|ref|YP_004597867.1| - 8.4e-32 110.6 1.4 9.4e-32 110.5 1.4 1.0 1 0 0 1 1 1 1 Universal stress protein family Usp PF00582.26 gi|336254761|ref|YP_004597868.1| - 1.5e-10 41.7 1.4 6.3e-09 36.5 1.4 2.1 1 1 0 1 1 1 1 Universal stress protein family DUF1803 PF08820.10 gi|336254761|ref|YP_004597868.1| - 0.12 12.4 0.1 0.31 11.1 0.1 1.6 1 1 1 2 2 2 0 Domain of unknown function (DUF1803) zf-FPG_IleRS PF06827.14 gi|336254762|ref|YP_004597869.1| - 0.14 12.1 3.7 1.9 8.4 0.5 2.3 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS CLIP1_ZNF PF16641.5 gi|336254762|ref|YP_004597869.1| - 0.16 11.9 1.0 0.16 11.9 1.0 1.9 2 0 0 2 2 2 0 CLIP1 zinc knuckle Aminotran_5 PF00266.19 gi|336254764|ref|YP_004597871.1| - 1.9e-33 116.0 0.0 2.4e-33 115.6 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|336254764|ref|YP_004597871.1| - 0.00069 18.3 0.0 0.00098 17.7 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|336254764|ref|YP_004597871.1| - 0.00092 18.6 0.2 0.0015 17.9 0.2 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family YdjM PF04307.14 gi|336254765|ref|YP_004597872.1| - 9.1e-15 54.4 22.8 9.1e-15 54.4 22.8 2.9 1 1 0 2 2 2 1 LexA-binding, inner membrane-associated putative hydrolase DUF2238 PF09997.9 gi|336254766|ref|YP_004597873.1| - 0.26 11.1 5.9 0.25 11.1 4.7 1.7 1 1 0 1 1 1 0 Predicted membrane protein (DUF2238) DUF5336 PF17270.2 gi|336254766|ref|YP_004597873.1| - 1.5 8.5 19.9 3 7.5 19.9 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5336) DUF2070 PF09843.9 gi|336254766|ref|YP_004597873.1| - 2.8 6.1 10.7 3.4 5.8 10.7 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) DUF2238 PF09997.9 gi|336254767|ref|YP_004597874.1| - 0.00059 19.6 1.9 0.0011 18.8 1.9 1.6 1 1 0 1 1 1 1 Predicted membrane protein (DUF2238) Dodecin PF07311.12 gi|336254768|ref|YP_004597875.1| - 6.3e-22 77.6 0.1 6.8e-22 77.5 0.1 1.0 1 0 0 1 1 1 1 Dodecin Fe-S_biosyn PF01521.20 gi|336254769|ref|YP_004597876.1| - 1.5e-18 67.0 0.0 1.8e-18 66.8 0.0 1.0 1 0 0 1 1 1 1 Iron-sulphur cluster biosynthesis MCPsignal PF00015.21 gi|336254771|ref|YP_004597878.1| - 1.7e-45 155.0 54.4 1.9e-41 141.8 26.2 3.7 1 1 3 4 4 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain PAS PF00989.25 gi|336254771|ref|YP_004597878.1| - 4.9e-13 49.1 0.1 1.7e-12 47.3 0.1 1.9 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 gi|336254771|ref|YP_004597878.1| - 1.9e-11 44.1 0.4 6.9e-11 42.3 0.0 2.2 2 1 1 3 3 1 1 PAS domain DUF948 PF06103.11 gi|336254771|ref|YP_004597878.1| - 2.1e-07 31.1 36.9 0.00066 19.9 4.4 5.4 2 2 2 4 4 4 2 Bacterial protein of unknown function (DUF948) Laminin_II PF06009.12 gi|336254771|ref|YP_004597878.1| - 2e-06 27.8 37.9 0.0002 21.4 4.1 4.7 3 2 2 5 5 4 3 Laminin Domain II PAS_4 PF08448.10 gi|336254771|ref|YP_004597878.1| - 3.1e-06 27.4 2.6 3.9e-05 23.9 2.6 3.0 1 1 0 1 1 1 1 PAS fold DUF1664 PF07889.12 gi|336254771|ref|YP_004597878.1| - 5.1e-06 26.5 27.8 0.0003 20.8 3.8 4.9 2 2 3 5 5 5 3 Protein of unknown function (DUF1664) BLOC1_2 PF10046.9 gi|336254771|ref|YP_004597878.1| - 5.5e-06 26.6 31.0 0.45 10.8 2.0 5.3 2 2 2 5 5 5 3 Biogenesis of lysosome-related organelles complex-1 subunit 2 PAS_8 PF13188.7 gi|336254771|ref|YP_004597878.1| - 3.2e-05 23.8 0.0 0.00014 21.8 0.0 2.1 1 0 0 1 1 1 1 PAS domain MLTR_LBD PF17765.1 gi|336254771|ref|YP_004597878.1| - 0.0021 18.2 0.3 0.0021 18.2 0.3 3.3 3 1 1 4 4 2 1 MmyB-like transcription regulator ligand binding domain ING PF12998.7 gi|336254771|ref|YP_004597878.1| - 0.0026 18.3 7.3 0.26 11.9 0.9 3.3 1 1 1 2 2 2 1 Inhibitor of growth proteins N-terminal histone-binding AAA_13 PF13166.6 gi|336254771|ref|YP_004597878.1| - 0.0027 16.4 30.7 0.008 14.9 13.6 2.1 1 1 0 2 2 2 2 AAA domain YkyA PF10368.9 gi|336254771|ref|YP_004597878.1| - 0.0028 17.4 33.5 0.021 14.5 13.1 3.2 1 1 2 3 3 3 2 Putative cell-wall binding lipoprotein Spc7 PF08317.11 gi|336254771|ref|YP_004597878.1| - 0.0067 15.3 10.9 0.0067 15.3 10.9 3.1 1 1 2 3 3 3 2 Spc7 kinetochore protein Syntaxin-6_N PF09177.11 gi|336254771|ref|YP_004597878.1| - 0.0096 16.5 26.9 0.2 12.2 5.2 4.6 2 2 2 4 4 4 2 Syntaxin 6, N-terminal Seryl_tRNA_N PF02403.22 gi|336254771|ref|YP_004597878.1| - 0.012 15.8 25.6 0.4 10.9 3.2 4.4 2 2 2 4 4 3 0 Seryl-tRNA synthetase N-terminal domain Bacillus_HBL PF05791.11 gi|336254771|ref|YP_004597878.1| - 0.024 14.5 0.5 0.024 14.5 0.5 3.3 3 1 0 3 3 3 0 Bacillus haemolytic enterotoxin (HBL) T3SSipB PF16535.5 gi|336254771|ref|YP_004597878.1| - 0.024 15.1 31.5 0.2 12.1 13.1 2.8 2 0 0 2 2 2 0 Type III cell invasion protein SipB Fib_alpha PF08702.10 gi|336254771|ref|YP_004597878.1| - 0.027 14.6 21.8 0.47 10.6 2.8 4.7 2 2 4 6 6 6 0 Fibrinogen alpha/beta chain family Med30 PF11315.8 gi|336254771|ref|YP_004597878.1| - 0.053 13.7 9.2 0.094 12.9 2.0 3.2 2 1 1 3 3 3 0 Mediator complex subunit 30 PAS_3 PF08447.12 gi|336254771|ref|YP_004597878.1| - 0.091 13.1 0.2 2.8 8.3 0.2 2.6 1 1 0 1 1 1 0 PAS fold Mod_r PF07200.13 gi|336254771|ref|YP_004597878.1| - 0.092 12.8 19.0 2.4 8.2 4.3 3.5 2 2 1 3 3 3 0 Modifier of rudimentary (Mod(r)) protein KxDL PF10241.9 gi|336254771|ref|YP_004597878.1| - 0.097 13.0 2.4 17 5.8 0.1 3.5 2 1 1 3 3 2 0 Uncharacterized conserved protein FH2 PF02181.23 gi|336254771|ref|YP_004597878.1| - 0.11 11.5 10.4 3.7 6.6 0.7 3.4 3 1 0 3 3 3 0 Formin Homology 2 Domain Sec34 PF04136.15 gi|336254771|ref|YP_004597878.1| - 0.18 11.7 17.0 12 5.8 0.1 4.5 2 2 4 6 6 6 0 Sec34-like family Syntaxin_2 PF14523.6 gi|336254771|ref|YP_004597878.1| - 0.21 12.0 12.1 4.1 7.8 1.3 4.4 2 2 1 3 3 3 0 Syntaxin-like protein ApoLp-III PF07464.11 gi|336254771|ref|YP_004597878.1| - 0.22 11.6 31.7 1.6 8.8 11.8 4.3 1 1 1 2 2 2 0 Apolipophorin-III precursor (apoLp-III) PAS_7 PF12860.7 gi|336254771|ref|YP_004597878.1| - 0.23 11.6 7.1 0.49 10.6 0.1 4.0 3 2 1 4 4 4 0 PAS fold FlgN PF05130.12 gi|336254771|ref|YP_004597878.1| - 0.32 11.5 27.2 0.7 10.4 8.7 4.0 1 1 3 4 4 4 0 FlgN protein Not3 PF04065.15 gi|336254771|ref|YP_004597878.1| - 0.43 10.0 24.6 1.3 8.4 7.6 3.1 1 1 2 3 3 3 0 Not1 N-terminal domain, CCR4-Not complex component Nup88 PF10168.9 gi|336254771|ref|YP_004597878.1| - 0.51 8.1 16.8 0.034 12.0 4.9 2.2 2 0 0 2 2 2 0 Nuclear pore component Sec5 PF15469.6 gi|336254771|ref|YP_004597878.1| - 0.54 10.0 7.8 0.4 10.5 4.9 2.2 1 1 1 2 2 2 0 Exocyst complex component Sec5 PhaP_Bmeg PF09602.10 gi|336254771|ref|YP_004597878.1| - 0.64 9.9 16.1 0.12 12.3 3.0 3.3 1 1 2 3 3 3 0 Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg) Nmad5 PF18757.1 gi|336254771|ref|YP_004597878.1| - 0.81 9.9 18.9 0.73 10.0 0.6 3.7 1 1 3 4 4 4 0 Nucleotide modification associated domain 5 DUF3450 PF11932.8 gi|336254771|ref|YP_004597878.1| - 0.88 8.8 33.3 1 8.6 2.8 3.9 1 1 4 5 5 5 0 Protein of unknown function (DUF3450) Tup_N PF08581.10 gi|336254771|ref|YP_004597878.1| - 0.9 9.9 8.8 2.1 8.7 0.2 3.3 2 1 1 3 3 3 0 Tup N-terminal DUF3584 PF12128.8 gi|336254771|ref|YP_004597878.1| - 1.1 6.7 39.4 1.3 6.4 17.2 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3584) DUF745 PF05335.13 gi|336254771|ref|YP_004597878.1| - 1.1 8.9 36.5 0.65 9.7 10.7 3.5 2 1 1 4 4 4 0 Protein of unknown function (DUF745) UPF0242 PF06785.11 gi|336254771|ref|YP_004597878.1| - 1.2 9.3 25.4 1.8 8.6 1.7 3.9 1 1 2 3 3 3 0 Uncharacterised protein family (UPF0242) N-terminus DUF16 PF01519.16 gi|336254771|ref|YP_004597878.1| - 1.5 9.4 24.9 17 6.0 7.4 5.0 2 2 1 3 3 3 0 Protein of unknown function DUF16 TMPIT PF07851.13 gi|336254771|ref|YP_004597878.1| - 1.5 8.0 15.2 8.5 5.5 2.9 3.1 1 1 1 2 2 2 0 TMPIT-like protein CREPT PF16566.5 gi|336254771|ref|YP_004597878.1| - 1.8 8.7 16.4 0.57 10.4 3.7 3.0 2 1 0 3 3 2 0 Cell-cycle alteration and expression-elevated protein in tumour Herpes_U30 PF04523.13 gi|336254771|ref|YP_004597878.1| - 2 6.2 9.6 0.64 7.8 0.7 2.2 1 1 0 2 2 2 0 Herpes virus tegument protein U30 AIP3 PF03915.13 gi|336254771|ref|YP_004597878.1| - 2.2 7.3 24.9 2.3 7.2 9.3 2.5 1 1 1 2 2 2 0 Actin interacting protein 3 DASH_Dam1 PF08653.10 gi|336254771|ref|YP_004597878.1| - 2.4 8.0 7.7 25 4.8 0.3 4.5 5 1 0 5 5 4 0 DASH complex subunit Dam1 Kre28 PF17097.5 gi|336254771|ref|YP_004597878.1| - 2.5 7.0 29.2 2.3 7.1 10.1 3.2 1 1 2 3 3 3 0 Spindle pole body component CorA PF01544.18 gi|336254771|ref|YP_004597878.1| - 2.5 7.3 25.6 0.9 8.8 6.0 3.1 1 1 2 3 3 3 0 CorA-like Mg2+ transporter protein DUF4795 PF16043.5 gi|336254771|ref|YP_004597878.1| - 2.7 7.5 25.9 1 8.9 6.6 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4795) Spectrin PF00435.21 gi|336254771|ref|YP_004597878.1| - 3.2 8.3 27.9 2.4 8.7 7.2 5.2 1 1 5 6 6 6 0 Spectrin repeat Gp-FAR-1 PF05823.12 gi|336254771|ref|YP_004597878.1| - 3.4 8.0 7.5 5.1 7.4 1.0 2.8 1 1 1 2 2 2 0 Nematode fatty acid retinoid binding protein (Gp-FAR-1) BORCS7 PF16088.5 gi|336254771|ref|YP_004597878.1| - 3.8 7.8 11.8 0.96 9.7 3.4 2.9 2 1 0 2 2 2 0 BLOC-1-related complex sub-unit 7 Goodbye PF17109.5 gi|336254771|ref|YP_004597878.1| - 4 7.9 10.4 16 6.0 1.2 3.9 2 2 0 2 2 2 0 fungal STAND N-terminal Goodbye domain FUSC PF04632.12 gi|336254771|ref|YP_004597878.1| - 4 5.9 25.7 3.2 6.2 21.4 2.5 1 1 0 1 1 1 0 Fusaric acid resistance protein family Hormone_1 PF00103.20 gi|336254771|ref|YP_004597878.1| - 5.5 6.7 8.7 8.7 6.0 0.2 3.3 3 0 0 3 3 3 0 Somatotropin hormone family IFT20 PF14931.6 gi|336254771|ref|YP_004597878.1| - 5.9 7.1 18.2 1.1 9.5 3.2 4.6 2 2 2 4 4 4 0 Intraflagellar transport complex B, subunit 20 APG17 PF04108.12 gi|336254771|ref|YP_004597878.1| - 6.5 5.8 38.2 1.1 8.4 10.4 3.6 1 1 2 3 3 3 0 Autophagy protein Apg17 Laminin_I PF06008.14 gi|336254771|ref|YP_004597878.1| - 7.3 6.2 32.9 4.7 6.8 9.2 3.6 2 2 1 3 3 3 0 Laminin Domain I Prominin PF05478.11 gi|336254771|ref|YP_004597878.1| - 8.3 4.2 13.7 11 3.8 8.7 2.1 1 1 1 2 2 2 0 Prominin LUC7 PF03194.15 gi|336254771|ref|YP_004597878.1| - 8.7 5.9 27.3 0.18 11.4 5.7 3.4 2 1 1 3 3 3 0 LUC7 N_terminus Histidinol_dh PF00815.20 gi|336254772|ref|YP_004597879.1| - 1.3e-157 525.0 7.3 1.6e-157 524.8 7.3 1.0 1 0 0 1 1 1 1 Histidinol dehydrogenase GGDEF_2 PF17853.1 gi|336254772|ref|YP_004597879.1| - 3.7 7.8 8.2 0.84 9.9 2.0 3.0 3 1 0 3 3 3 0 GGDEF-like domain DUF4233 PF14017.6 gi|336254773|ref|YP_004597880.1| - 0.0064 16.8 3.5 0.0072 16.6 3.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF4233) Trp_oprn_chp PF09534.10 gi|336254773|ref|YP_004597880.1| - 0.49 10.2 7.6 0.53 10.1 7.6 1.2 1 0 0 1 1 1 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) DUF4032 PF13224.6 gi|336254776|ref|YP_004597883.1| - 0.0048 16.8 0.2 0.0062 16.4 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4032) DUF892 PF05974.12 gi|336254777|ref|YP_004597884.1| - 7.1e-45 152.9 11.4 8e-45 152.7 11.4 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF892) Ferritin PF00210.24 gi|336254777|ref|YP_004597884.1| - 0.00092 19.2 13.3 0.0023 17.9 13.2 1.7 1 1 0 1 1 1 1 Ferritin-like domain Vir_act_alpha_C PF10400.9 gi|336254777|ref|YP_004597884.1| - 0.13 13.0 8.1 2.1 9.1 0.6 3.1 2 1 0 2 2 2 0 Virulence activator alpha C-term DUF2383 PF09537.10 gi|336254777|ref|YP_004597884.1| - 0.21 12.0 4.8 0.92 9.9 0.4 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF2383) FlgN PF05130.12 gi|336254777|ref|YP_004597884.1| - 0.28 11.7 6.6 3.8 8.0 0.5 2.4 2 1 0 2 2 2 0 FlgN protein Acetyltransf_1 PF00583.25 gi|336254779|ref|YP_004597886.1| - 2.1e-18 66.7 0.0 2.6e-18 66.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|336254779|ref|YP_004597886.1| - 3.2e-12 46.5 0.0 3.5e-12 46.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|336254779|ref|YP_004597886.1| - 6.2e-12 45.8 0.0 9.2e-12 45.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|336254779|ref|YP_004597886.1| - 2.4e-08 34.1 0.0 5.4e-08 33.0 0.0 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|336254779|ref|YP_004597886.1| - 5.8e-08 32.6 0.0 1.6e-07 31.2 0.0 1.8 2 0 0 2 2 2 1 FR47-like protein Acetyltransf_8 PF13523.6 gi|336254779|ref|YP_004597886.1| - 0.0022 17.7 0.0 0.0034 17.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|336254779|ref|YP_004597886.1| - 0.011 16.4 0.0 0.016 15.9 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain GNAT_acetyltran PF12746.7 gi|336254779|ref|YP_004597886.1| - 0.14 11.7 0.0 0.15 11.6 0.0 1.1 1 0 0 1 1 1 0 GNAT acetyltransferase Acetyltransf_4 PF13420.7 gi|336254779|ref|YP_004597886.1| - 0.18 11.9 0.0 0.23 11.6 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain zf-C2H2_9 PF16293.5 gi|336254780|ref|YP_004597887.1| - 0.0025 17.6 0.1 0.0048 16.7 0.1 1.4 1 0 0 1 1 1 1 C2H2 type zinc-finger (1 copy) PSK_trans_fac PF07704.11 gi|336254780|ref|YP_004597887.1| - 1.2 9.9 5.6 0.45 11.3 2.2 2.0 2 1 0 2 2 2 0 Rv0623-like transcription factor Reductase_C PF14759.6 gi|336254781|ref|YP_004597888.1| - 0.1 13.2 1.5 0.19 12.3 0.4 1.8 2 0 0 2 2 2 0 Reductase C-terminal NUDIX PF00293.28 gi|336254782|ref|YP_004597889.1| - 1.5e-15 57.4 1.5 2.7e-15 56.6 1.5 1.4 1 0 0 1 1 1 1 NUDIX domain Rhodanese PF00581.20 gi|336254783|ref|YP_004597890.1| - 3.9e-12 46.6 0.0 4.7e-12 46.4 0.0 1.1 1 0 0 1 1 1 1 Rhodanese-like domain SUI1 PF01253.22 gi|336254784|ref|YP_004597891.1| - 3.9e-22 78.6 0.0 4.7e-22 78.3 0.0 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 Img2 PF05046.14 gi|336254784|ref|YP_004597891.1| - 0.0022 18.3 0.0 0.0028 17.9 0.0 1.4 1 1 0 1 1 1 1 Mitochondrial large subunit ribosomal protein (Img2) DTW PF03942.15 gi|336254784|ref|YP_004597891.1| - 0.0081 15.9 0.4 0.01 15.6 0.4 1.1 1 0 0 1 1 1 1 DTW domain Transglut_core PF01841.19 gi|336254785|ref|YP_004597892.1| - 1.6e-28 99.4 0.0 3.6e-28 98.2 0.0 1.6 1 0 0 1 1 1 1 Transglutaminase-like superfamily DUF4129 PF13559.6 gi|336254785|ref|YP_004597892.1| - 6.5e-09 35.9 8.1 6.5e-09 35.9 8.1 2.9 3 0 0 3 3 2 1 Domain of unknown function (DUF4129) Transglut_core3 PF13471.6 gi|336254785|ref|YP_004597892.1| - 3.3e-05 23.8 0.2 0.00034 20.5 0.0 2.4 2 0 0 2 2 2 1 Transglutaminase-like superfamily DUF3488 PF11992.8 gi|336254785|ref|YP_004597892.1| - 0.0002 20.4 0.0 0.0002 20.4 0.0 2.8 3 0 0 3 3 3 1 Domain of unknown function (DUF3488) SPX PF03105.19 gi|336254785|ref|YP_004597892.1| - 0.37 10.7 7.7 0.6 10.0 7.7 1.3 1 0 0 1 1 1 0 SPX domain Apt1 PF10351.9 gi|336254785|ref|YP_004597892.1| - 0.45 9.3 3.7 0.62 8.8 3.7 1.1 1 0 0 1 1 1 0 Golgi-body localisation protein domain SOG2 PF10428.9 gi|336254785|ref|YP_004597892.1| - 0.89 8.7 4.1 1.5 7.9 4.1 1.3 1 0 0 1 1 1 0 RAM signalling pathway protein CDC45 PF02724.14 gi|336254785|ref|YP_004597892.1| - 0.93 7.7 5.6 1.3 7.2 5.6 1.1 1 0 0 1 1 1 0 CDC45-like protein Presenilin PF01080.17 gi|336254785|ref|YP_004597892.1| - 1.5 7.5 3.8 2.5 6.8 3.8 1.3 1 0 0 1 1 1 0 Presenilin Trypan_PARP PF05887.11 gi|336254785|ref|YP_004597892.1| - 5.9 6.9 14.3 17 5.4 14.3 1.8 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) 7tm_3 PF00003.22 gi|336254785|ref|YP_004597892.1| - 7.3 6.3 7.9 4.3 7.0 5.8 1.7 2 1 0 2 2 2 0 7 transmembrane sweet-taste receptor of 3 GCPR DUF58 PF01882.18 gi|336254786|ref|YP_004597893.1| - 6.5e-16 58.4 1.3 4.8e-15 55.6 0.3 2.6 2 0 0 2 2 2 1 Protein of unknown function DUF58 AAA_3 PF07726.11 gi|336254787|ref|YP_004597894.1| - 1.1e-60 203.3 0.1 2.3e-60 202.2 0.1 1.6 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|336254787|ref|YP_004597894.1| - 4.9e-18 64.7 3.9 1.4e-17 63.3 3.9 1.8 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|336254787|ref|YP_004597894.1| - 7.2e-14 52.0 0.0 1.3e-13 51.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|336254787|ref|YP_004597894.1| - 3.7e-06 27.4 0.0 8.1e-06 26.3 0.0 1.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|336254787|ref|YP_004597894.1| - 4.1e-05 23.4 0.0 0.0012 18.6 0.0 2.1 1 1 0 1 1 1 1 Sigma-54 interaction domain RuvB_N PF05496.12 gi|336254787|ref|YP_004597894.1| - 0.00026 20.8 0.0 0.0022 17.8 0.0 2.1 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain MCM PF00493.23 gi|336254787|ref|YP_004597894.1| - 0.00034 19.8 0.0 0.00083 18.5 0.0 1.6 1 1 0 1 1 1 1 MCM P-loop domain Mg_chelatase PF01078.21 gi|336254787|ref|YP_004597894.1| - 0.002 17.6 0.0 0.029 13.8 0.0 2.1 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI MCM_lid PF17855.1 gi|336254787|ref|YP_004597894.1| - 0.27 11.7 1.1 0.46 10.9 1.1 1.5 1 0 0 1 1 1 0 MCM AAA-lid domain CSD PF00313.22 gi|336254788|ref|YP_004597895.1| - 1.8e-21 75.7 0.3 2e-21 75.6 0.3 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain S1-like PF14444.6 gi|336254788|ref|YP_004597895.1| - 0.0086 16.0 0.7 0.011 15.7 0.7 1.4 1 1 0 1 1 1 1 S1-like OB_RNB PF08206.11 gi|336254788|ref|YP_004597895.1| - 0.017 14.8 1.5 0.026 14.2 1.5 1.4 1 0 0 1 1 1 0 Ribonuclease B OB domain CusF_Ec PF11604.8 gi|336254788|ref|YP_004597895.1| - 0.044 13.7 0.0 0.057 13.4 0.0 1.3 1 0 0 1 1 1 0 Copper binding periplasmic protein CusF Zn-ribbon_8 PF09723.10 gi|336254789|ref|YP_004597896.1| - 0.0095 16.0 3.3 0.018 15.2 3.3 1.4 1 0 0 1 1 1 1 Zinc ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|336254789|ref|YP_004597896.1| - 0.059 13.3 2.7 0.5 10.4 2.7 2.1 1 1 0 1 1 1 0 PhnA Zinc-Ribbon zf_UBZ PF18439.1 gi|336254789|ref|YP_004597896.1| - 0.087 12.4 3.9 2.9 7.6 0.2 2.3 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger Zn_Tnp_IS1595 PF12760.7 gi|336254789|ref|YP_004597896.1| - 0.12 12.4 4.0 0.27 11.3 0.3 2.3 1 1 1 2 2 2 0 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|336254789|ref|YP_004597896.1| - 0.13 12.2 0.7 0.25 11.3 0.7 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.12 gi|336254789|ref|YP_004597896.1| - 0.18 11.3 5.0 3.8 7.1 0.2 2.6 1 1 1 2 2 2 0 TFIIB zinc-binding Rubredoxin_2 PF18073.1 gi|336254789|ref|YP_004597896.1| - 0.22 11.3 5.8 4.1 7.2 1.3 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain Bac_luciferase PF00296.20 gi|336254791|ref|YP_004597898.1| - 5e-63 213.4 11.9 6.6e-63 213.0 11.9 1.1 1 0 0 1 1 1 1 Luciferase-like monooxygenase VitK2_biosynth PF02621.14 gi|336254791|ref|YP_004597898.1| - 0.1 12.1 0.0 0.17 11.3 0.0 1.3 1 0 0 1 1 1 0 Menaquinone biosynthesis Methyltransf_25 PF13649.6 gi|336254792|ref|YP_004597899.1| - 4e-23 81.9 0.1 6.9e-23 81.2 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|336254792|ref|YP_004597899.1| - 2.5e-21 76.1 0.1 4e-21 75.5 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|336254792|ref|YP_004597899.1| - 2.8e-17 62.9 0.0 3.7e-17 62.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|336254792|ref|YP_004597899.1| - 8.3e-15 54.8 0.0 7.5e-14 51.6 0.0 2.0 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|336254792|ref|YP_004597899.1| - 2.8e-14 53.6 0.0 4.7e-14 52.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|336254792|ref|YP_004597899.1| - 5e-12 46.0 0.0 6.5e-12 45.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_29 PF03141.16 gi|336254792|ref|YP_004597899.1| - 1e-06 27.7 0.0 1.3e-06 27.3 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase MetW PF07021.12 gi|336254792|ref|YP_004597899.1| - 0.00021 21.0 0.0 0.00031 20.4 0.0 1.1 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW CMAS PF02353.20 gi|336254792|ref|YP_004597899.1| - 0.0076 15.6 0.0 0.0098 15.2 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_32 PF13679.6 gi|336254792|ref|YP_004597899.1| - 0.023 14.7 0.0 0.032 14.2 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_8 PF05148.15 gi|336254792|ref|YP_004597899.1| - 0.024 14.5 0.2 0.068 13.0 0.2 1.6 1 1 0 1 1 1 0 Hypothetical methyltransferase MTS PF05175.14 gi|336254792|ref|YP_004597899.1| - 0.026 14.1 0.1 0.041 13.4 0.1 1.2 1 0 0 1 1 1 0 Methyltransferase small domain zf-NADH-PPase PF09297.11 gi|336254792|ref|YP_004597899.1| - 0.04 13.6 0.6 0.37 10.5 0.6 2.4 1 1 0 1 1 1 0 NADH pyrophosphatase zinc ribbon domain Zn-ribbon_8 PF09723.10 gi|336254792|ref|YP_004597899.1| - 0.08 13.1 0.0 0.22 11.7 0.0 1.7 1 0 0 1 1 1 0 Zinc ribbon domain Thump_like PF18096.1 gi|336254792|ref|YP_004597899.1| - 0.093 12.7 0.0 0.19 11.7 0.0 1.4 1 0 0 1 1 1 0 THUMP domain-like F420_ligase PF01996.16 gi|336254793|ref|YP_004597900.1| - 1.6e-61 207.7 0.0 2e-61 207.5 0.0 1.0 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase Hydantoinase_B PF02538.14 gi|336254794|ref|YP_004597901.1| - 1.7e-209 696.5 5.7 1.9e-209 696.4 5.7 1.0 1 0 0 1 1 1 1 Hydantoinase B/oxoprolinase Hydantoinase_A PF01968.18 gi|336254795|ref|YP_004597902.1| - 1.1e-99 333.4 11.7 1.4e-99 333.0 5.3 2.5 3 0 0 3 3 3 2 Hydantoinase/oxoprolinase Hydant_A_N PF05378.13 gi|336254795|ref|YP_004597902.1| - 1.7e-50 171.2 2.6 4.1e-50 170.0 0.1 2.5 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase N-terminal region IF-2B PF01008.17 gi|336254796|ref|YP_004597903.1| - 1.6e-47 162.1 0.2 2.1e-47 161.7 0.2 1.1 1 0 0 1 1 1 1 Initiation factor 2 subunit family NUDIX PF00293.28 gi|336254796|ref|YP_004597903.1| - 2e-09 37.6 0.2 4.7e-09 36.4 0.2 1.6 1 0 0 1 1 1 1 NUDIX domain Titin_Z PF09042.11 gi|336254796|ref|YP_004597903.1| - 2.3 8.2 8.3 0.15 12.0 1.6 2.6 2 1 0 2 2 2 0 Titin Z 2-Hacid_dh_C PF02826.19 gi|336254797|ref|YP_004597904.1| - 2.1e-53 180.3 0.0 2.6e-53 180.0 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|336254797|ref|YP_004597904.1| - 3.8e-06 26.6 0.0 5.3e-06 26.1 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.15 gi|336254797|ref|YP_004597904.1| - 1.3e-05 25.4 0.0 2.1e-05 24.7 0.0 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Pyr_redox PF00070.27 gi|336254797|ref|YP_004597904.1| - 6.6e-05 23.4 0.5 0.0029 18.1 0.2 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase AdoHcyase_NAD PF00670.21 gi|336254797|ref|YP_004597904.1| - 7.9e-05 22.8 0.1 0.00073 19.6 0.0 2.1 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain F420_oxidored PF03807.17 gi|336254797|ref|YP_004597904.1| - 0.013 16.1 0.0 0.029 15.0 0.0 1.6 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.18 gi|336254797|ref|YP_004597904.1| - 0.041 13.8 1.7 0.096 12.6 1.7 1.7 1 1 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|336254797|ref|YP_004597904.1| - 0.045 13.7 2.6 5.6 6.9 0.4 2.5 2 1 1 3 3 3 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus XdhC_C PF13478.6 gi|336254797|ref|YP_004597904.1| - 0.05 14.1 0.2 1.1 9.8 0.0 2.3 2 0 0 2 2 2 0 XdhC Rossmann domain DpaA_N PF16924.5 gi|336254797|ref|YP_004597904.1| - 0.12 12.5 0.0 0.27 11.3 0.0 1.6 2 0 0 2 2 2 0 Dipicolinate synthase subunit A N-terminal domain IlvN PF07991.12 gi|336254797|ref|YP_004597904.1| - 0.13 11.8 0.0 0.2 11.2 0.0 1.2 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain Acetyltransf_10 PF13673.7 gi|336254798|ref|YP_004597905.1| - 1.6e-14 53.9 0.0 2.4e-14 53.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|336254798|ref|YP_004597905.1| - 1.1e-12 48.2 0.0 1.4e-12 47.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|336254798|ref|YP_004597905.1| - 4.6e-10 39.8 0.0 7.4e-10 39.1 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|336254798|ref|YP_004597905.1| - 7.3e-06 25.9 0.0 1.6e-05 24.8 0.0 1.5 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|336254798|ref|YP_004597905.1| - 5e-05 23.4 0.0 0.0003 20.9 0.0 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|336254798|ref|YP_004597905.1| - 0.00093 19.4 0.0 0.0038 17.4 0.0 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain NUDIX PF00293.28 gi|336254799|ref|YP_004597906.1| - 6.3e-11 42.4 0.1 1e-10 41.8 0.1 1.4 1 1 0 1 1 1 1 NUDIX domain GrpB PF04229.14 gi|336254800|ref|YP_004597907.1| - 4.2e-50 170.0 0.2 4.9e-50 169.8 0.2 1.0 1 0 0 1 1 1 1 GrpB protein TPR_14 PF13428.6 gi|336254800|ref|YP_004597907.1| - 0.13 13.2 1.2 2.1 9.4 0.2 2.9 1 1 1 2 2 2 0 Tetratricopeptide repeat DGC PF08859.11 gi|336254801|ref|YP_004597908.1| - 5.2e-33 113.3 0.4 6e-33 113.1 0.4 1.0 1 0 0 1 1 1 1 DGC domain MMR_HSR1 PF01926.23 gi|336254802|ref|YP_004597909.1| - 9.7e-20 70.8 0.0 1.6e-19 70.1 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|336254802|ref|YP_004597909.1| - 1.2e-13 50.9 0.2 2.5e-12 46.6 0.2 2.0 1 1 0 1 1 1 1 Ferrous iron transport protein B GTP_EFTU PF00009.27 gi|336254802|ref|YP_004597909.1| - 8.6e-07 28.7 0.3 2.5e-05 23.9 0.3 2.1 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain RsgA_GTPase PF03193.16 gi|336254802|ref|YP_004597909.1| - 7.1e-05 22.8 0.2 0.049 13.5 0.1 2.5 2 1 0 2 2 2 2 RsgA GTPase Dynamin_N PF00350.23 gi|336254802|ref|YP_004597909.1| - 0.00081 19.5 0.0 0.033 14.3 0.0 2.2 1 1 1 2 2 2 1 Dynamin family ATP_bind_1 PF03029.17 gi|336254802|ref|YP_004597909.1| - 0.00083 19.2 1.1 0.055 13.2 0.1 2.5 2 1 0 2 2 2 1 Conserved hypothetical ATP binding protein Roc PF08477.13 gi|336254802|ref|YP_004597909.1| - 0.0019 18.4 0.1 0.013 15.7 0.0 2.1 2 1 0 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase RBD-FIP PF09457.10 gi|336254802|ref|YP_004597909.1| - 0.0026 17.6 0.3 0.0059 16.5 0.3 1.5 1 0 0 1 1 1 1 FIP domain ABC_tran PF00005.27 gi|336254802|ref|YP_004597909.1| - 0.0031 18.0 0.0 0.0041 17.6 0.0 1.5 1 1 0 1 1 1 1 ABC transporter AIG1 PF04548.16 gi|336254802|ref|YP_004597909.1| - 0.0047 16.3 0.0 0.0071 15.7 0.0 1.3 1 0 0 1 1 1 1 AIG1 family MeaB PF03308.16 gi|336254802|ref|YP_004597909.1| - 0.012 14.6 0.3 2.4 7.1 0.0 2.2 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_18 PF13238.6 gi|336254802|ref|YP_004597909.1| - 0.016 15.8 0.0 0.032 14.8 0.0 1.6 1 1 1 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|336254802|ref|YP_004597909.1| - 0.044 14.1 0.3 0.61 10.4 0.2 2.7 1 1 1 2 2 2 0 AAA domain Ras PF00071.22 gi|336254802|ref|YP_004597909.1| - 0.044 13.4 0.0 0.12 11.9 0.0 1.7 2 0 0 2 2 2 0 Ras family Arf PF00025.21 gi|336254802|ref|YP_004597909.1| - 0.064 12.7 0.0 3.4 7.1 0.0 2.3 2 1 0 2 2 2 0 ADP-ribosylation factor family AAA_24 PF13479.6 gi|336254802|ref|YP_004597909.1| - 0.15 11.8 0.0 0.49 10.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|336254802|ref|YP_004597909.1| - 0.15 11.8 0.0 0.29 10.9 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF389 PF04087.14 gi|336254803|ref|YP_004597910.1| - 1.3e-34 119.2 17.9 1.3e-34 119.2 17.9 2.3 3 0 0 3 3 3 1 Domain of unknown function (DUF389) HPP PF04982.13 gi|336254803|ref|YP_004597910.1| - 2 8.6 22.8 1.6 9.0 1.6 2.5 1 1 1 2 2 2 0 HPP family DUF4536 PF15055.6 gi|336254804|ref|YP_004597911.1| - 0.6 10.4 5.6 0.47 10.7 3.5 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4536) NOG1_N PF17835.1 gi|336254805|ref|YP_004597912.1| - 2.3e-44 151.2 0.2 3.2e-44 150.7 0.2 1.2 1 0 0 1 1 1 1 NOG1 N-terminal helical domain NOG1 PF06858.14 gi|336254805|ref|YP_004597912.1| - 7.2e-22 76.9 0.0 1.5e-21 75.9 0.0 1.6 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) MMR_HSR1 PF01926.23 gi|336254805|ref|YP_004597912.1| - 1.2e-18 67.2 0.0 2.2e-18 66.4 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|336254805|ref|YP_004597912.1| - 3.1e-09 36.5 0.0 5.6e-09 35.7 0.0 1.4 1 0 0 1 1 1 1 Ferrous iron transport protein B MMR_HSR1_Xtn PF16897.5 gi|336254805|ref|YP_004597912.1| - 0.0034 17.4 0.0 0.0085 16.1 0.0 1.6 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain Dynamin_N PF00350.23 gi|336254805|ref|YP_004597912.1| - 0.0065 16.5 1.5 3.8 7.6 0.0 3.0 2 1 1 3 3 3 2 Dynamin family RsgA_GTPase PF03193.16 gi|336254805|ref|YP_004597912.1| - 0.0066 16.4 0.0 0.022 14.7 0.0 1.8 1 1 0 1 1 1 1 RsgA GTPase APP_E2 PF12925.7 gi|336254805|ref|YP_004597912.1| - 0.01 15.6 0.1 0.017 14.9 0.1 1.3 1 0 0 1 1 1 0 E2 domain of amyloid precursor protein AIG1 PF04548.16 gi|336254805|ref|YP_004597912.1| - 0.022 14.1 0.0 0.043 13.1 0.0 1.5 1 0 0 1 1 1 0 AIG1 family DUF5518 PF17647.1 gi|336254806|ref|YP_004597913.1| - 1.8e-16 60.4 49.3 2e-16 60.2 49.3 1.0 1 0 0 1 1 1 1 Family of unknown function (DUF5518) Ldr_toxin PF13940.6 gi|336254806|ref|YP_004597913.1| - 0.65 10.1 5.3 0.43 10.7 1.5 2.5 1 1 1 2 2 2 0 Toxin Ldr, type I toxin-antitoxin system DUF326 PF03860.16 gi|336254807|ref|YP_004597914.1| - 1.4e-09 37.6 47.5 0.00015 21.6 5.2 4.7 4 1 0 4 4 4 4 Domain of Unknown Function (DUF326) Helicase_IV_N PF12462.8 gi|336254807|ref|YP_004597914.1| - 0.18 11.7 0.3 0.29 11.1 0.0 1.5 2 0 0 2 2 2 0 DNA helicase IV / RNA helicase N terminal PRA-PH PF01503.17 gi|336254808|ref|YP_004597915.1| - 1.3e-17 64.0 2.5 1.5e-17 63.8 2.5 1.0 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG PF03819.17 gi|336254808|ref|YP_004597915.1| - 0.0001 22.4 3.8 0.00015 21.9 3.8 1.2 1 0 0 1 1 1 1 MazG nucleotide pyrophosphohydrolase domain DUF3839 PF12943.7 gi|336254808|ref|YP_004597915.1| - 0.076 12.4 0.1 0.076 12.4 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3839) DNase-RNase PF02577.14 gi|336254809|ref|YP_004597916.1| - 4.6e-38 129.8 0.0 5.1e-38 129.6 0.0 1.0 1 0 0 1 1 1 1 Bifunctional nuclease SNO PF01174.19 gi|336254810|ref|YP_004597917.1| - 1.6e-44 152.1 0.0 2.9e-44 151.2 0.0 1.4 1 1 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.14 gi|336254810|ref|YP_004597917.1| - 3e-09 36.7 0.0 6.2e-09 35.7 0.0 1.5 2 0 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_S51 PF03575.17 gi|336254810|ref|YP_004597917.1| - 0.00056 19.6 0.0 0.00081 19.1 0.0 1.2 1 0 0 1 1 1 1 Peptidase family S51 DJ-1_PfpI PF01965.24 gi|336254810|ref|YP_004597917.1| - 0.00062 19.6 0.1 0.00094 19.0 0.1 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family BPL_N PF09825.9 gi|336254810|ref|YP_004597917.1| - 0.0071 15.5 0.0 0.041 13.0 0.0 1.9 2 0 0 2 2 2 1 Biotin-protein ligase, N terminal GATase PF00117.28 gi|336254810|ref|YP_004597917.1| - 0.026 14.3 0.0 5.5 6.7 0.0 2.1 2 0 0 2 2 2 0 Glutamine amidotransferase class-I Sec61_beta PF03911.16 gi|336254811|ref|YP_004597918.1| - 3.1e-17 62.3 0.1 4.2e-17 61.9 0.1 1.2 1 0 0 1 1 1 1 Sec61beta family Thioredoxin PF00085.20 gi|336254812|ref|YP_004597919.1| - 5.7e-22 77.6 0.0 6.6e-22 77.5 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|336254812|ref|YP_004597919.1| - 4.3e-08 33.6 0.3 6.4e-07 29.8 0.3 2.0 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.6 gi|336254812|ref|YP_004597919.1| - 3.1e-06 27.4 0.0 0.0046 17.2 0.0 2.1 1 1 1 2 2 2 2 Thioredoxin-like TraF PF13728.6 gi|336254812|ref|YP_004597919.1| - 4.2e-05 23.5 0.0 4.2e-05 23.5 0.0 1.1 1 0 0 1 1 1 1 F plasmid transfer operon protein Thioredoxin_3 PF13192.6 gi|336254812|ref|YP_004597919.1| - 0.0001 22.3 0.0 0.00012 22.1 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin_9 PF14595.6 gi|336254812|ref|YP_004597919.1| - 0.00014 21.6 0.0 0.00016 21.5 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin DUF836 PF05768.14 gi|336254812|ref|YP_004597919.1| - 0.00016 22.0 0.1 0.00021 21.6 0.1 1.2 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Redoxin PF08534.10 gi|336254812|ref|YP_004597919.1| - 0.0012 18.5 0.3 0.095 12.4 0.1 2.0 1 1 1 2 2 2 2 Redoxin Thioredoxin_5 PF13743.6 gi|336254812|ref|YP_004597919.1| - 0.0013 18.4 0.0 0.0014 18.4 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin KaiB PF07689.12 gi|336254812|ref|YP_004597919.1| - 0.0017 18.0 0.0 0.0021 17.8 0.0 1.2 1 0 0 1 1 1 1 KaiB domain DSBA PF01323.20 gi|336254812|ref|YP_004597919.1| - 0.0024 17.7 0.1 0.027 14.2 0.0 1.9 1 1 1 2 2 2 1 DSBA-like thioredoxin domain AhpC-TSA PF00578.21 gi|336254812|ref|YP_004597919.1| - 0.003 17.5 0.1 0.0058 16.5 0.1 1.4 1 1 0 1 1 1 1 AhpC/TSA family Glutaredoxin PF00462.24 gi|336254812|ref|YP_004597919.1| - 0.0098 16.1 0.1 0.024 14.8 0.0 1.7 1 1 1 2 2 2 1 Glutaredoxin HyaE PF07449.11 gi|336254812|ref|YP_004597919.1| - 0.077 13.0 0.0 0.098 12.6 0.0 1.2 1 0 0 1 1 1 0 Hydrogenase-1 expression protein HyaE F420_oxidored PF03807.17 gi|336254813|ref|YP_004597920.1| - 4.9e-17 62.3 0.0 8.3e-17 61.6 0.0 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|336254813|ref|YP_004597920.1| - 0.0018 18.5 0.0 0.0038 17.4 0.0 1.5 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase Semialdhyde_dh PF01118.24 gi|336254813|ref|YP_004597920.1| - 0.0032 17.9 0.1 0.0047 17.4 0.1 1.5 1 1 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain ApbA PF02558.16 gi|336254813|ref|YP_004597920.1| - 0.0032 17.1 0.0 0.0049 16.5 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA PDH PF02153.17 gi|336254813|ref|YP_004597920.1| - 0.033 13.2 0.1 0.057 12.4 0.1 1.3 1 0 0 1 1 1 0 Prephenate dehydrogenase CoA_binding PF02629.19 gi|336254813|ref|YP_004597920.1| - 0.034 14.8 0.0 0.12 13.1 0.0 2.0 2 0 0 2 2 2 0 CoA binding domain NAD_Gly3P_dh_N PF01210.23 gi|336254813|ref|YP_004597920.1| - 0.064 13.2 0.0 0.13 12.2 0.0 1.5 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CARDB PF07705.11 gi|336254814|ref|YP_004597921.1| - 1e-05 25.7 0.0 0.027 14.7 0.0 2.6 2 0 0 2 2 2 2 CARDB DUF11 PF01345.18 gi|336254814|ref|YP_004597921.1| - 0.00059 20.1 1.2 1.8 8.9 0.1 3.4 3 0 0 3 3 3 2 Domain of unknown function DUF11 DUF4352 PF11611.8 gi|336254814|ref|YP_004597921.1| - 0.0043 17.3 0.0 6.5 7.1 0.0 3.1 3 0 0 3 3 3 2 Domain of unknown function (DUF4352) DUF3052 PF11253.8 gi|336254815|ref|YP_004597922.1| - 0.03 14.2 0.7 0.041 13.8 0.5 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3052) dCache_1 PF02743.18 gi|336254815|ref|YP_004597922.1| - 0.083 12.7 0.3 0.096 12.5 0.3 1.0 1 0 0 1 1 1 0 Cache domain Nup192 PF11894.8 gi|336254815|ref|YP_004597922.1| - 0.28 8.3 0.2 0.33 8.0 0.2 1.0 1 0 0 1 1 1 0 Nuclear pore complex scaffold, nucleoporins 186/192/205 DUF4404 PF14357.6 gi|336254815|ref|YP_004597922.1| - 0.68 10.6 4.5 1 10.0 4.5 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4404) GDPD PF03009.17 gi|336254816|ref|YP_004597923.1| - 1.8e-24 86.9 0.0 2.9e-24 86.2 0.0 1.3 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family GDPD_2 PF13653.6 gi|336254816|ref|YP_004597923.1| - 0.016 15.6 0.5 0.037 14.5 0.5 1.6 1 0 0 1 1 1 0 Glycerophosphoryl diester phosphodiesterase family Response_reg PF00072.24 gi|336254817|ref|YP_004597924.1| - 3.6e-18 65.7 0.0 4.4e-18 65.5 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain Hydrolase PF00702.26 gi|336254818|ref|YP_004597925.1| - 6.1e-11 43.0 0.7 2e-10 41.3 0.7 1.7 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|336254818|ref|YP_004597925.1| - 1.1e-08 35.4 0.0 3.8e-07 30.4 0.0 2.2 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|336254818|ref|YP_004597925.1| - 6.6e-07 29.3 0.1 2.1e-06 27.7 0.1 1.9 1 1 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|336254818|ref|YP_004597925.1| - 5.3e-05 23.7 4.3 0.00018 22.0 0.9 2.2 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase NIF PF03031.18 gi|336254818|ref|YP_004597925.1| - 0.015 15.0 0.0 0.46 10.3 0.0 2.2 2 0 0 2 2 2 0 NLI interacting factor-like phosphatase HD_3 PF13023.6 gi|336254819|ref|YP_004597926.1| - 0.00042 20.3 0.0 0.00052 20.0 0.0 1.2 1 0 0 1 1 1 1 HD domain HD_2 PF12917.7 gi|336254819|ref|YP_004597926.1| - 0.00083 19.2 0.0 0.0012 18.6 0.0 1.3 1 0 0 1 1 1 1 HD containing hydrolase-like enzyme HD PF01966.22 gi|336254819|ref|YP_004597926.1| - 0.01 16.0 0.1 0.014 15.7 0.1 1.4 1 0 0 1 1 1 0 HD domain UPF0146 PF03686.13 gi|336254820|ref|YP_004597927.1| - 1.4e-29 102.6 0.2 1.6e-29 102.4 0.2 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0146) Nucleotid_trans PF03407.16 gi|336254820|ref|YP_004597927.1| - 0.039 13.9 0.0 4 7.4 0.0 2.0 2 0 0 2 2 2 0 Nucleotide-diphospho-sugar transferase HEM4 PF02602.15 gi|336254820|ref|YP_004597927.1| - 0.067 12.5 0.1 0.07 12.5 0.1 1.2 1 0 0 1 1 1 0 Uroporphyrinogen-III synthase HemD Peptidase_M54 PF07998.11 gi|336254821|ref|YP_004597928.1| - 6.6e-22 78.5 0.0 7.9e-22 78.2 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M54 Reprolysin_4 PF13583.6 gi|336254821|ref|YP_004597928.1| - 3.2e-06 26.9 0.0 4e-06 26.6 0.0 1.0 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_2 PF13574.6 gi|336254821|ref|YP_004597928.1| - 0.00018 21.5 0.0 0.00024 21.1 0.0 1.2 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Peptidase_M10 PF00413.24 gi|336254821|ref|YP_004597928.1| - 0.00038 20.3 0.0 0.00042 20.2 0.0 1.3 1 0 0 1 1 1 1 Matrixin Reprolysin_5 PF13688.6 gi|336254821|ref|YP_004597928.1| - 0.0011 19.2 0.0 0.0012 19.0 0.0 1.2 1 0 0 1 1 1 1 Metallo-peptidase family M12 Reprolysin_3 PF13582.6 gi|336254821|ref|YP_004597928.1| - 0.0012 19.3 0.0 0.0016 19.0 0.0 1.3 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Peptidase_M66 PF10462.9 gi|336254821|ref|YP_004597928.1| - 0.0056 15.7 0.0 0.0075 15.3 0.0 1.2 1 0 0 1 1 1 1 Peptidase M66 DUF4953 PF16313.5 gi|336254821|ref|YP_004597928.1| - 0.012 14.9 0.0 0.018 14.3 0.0 1.2 1 0 0 1 1 1 0 Met-zincin Zincin_1 PF06262.11 gi|336254821|ref|YP_004597928.1| - 0.081 13.0 0.0 0.13 12.4 0.0 1.3 1 0 0 1 1 1 0 Zincin-like metallopeptidase Methyltransf_11 PF08241.12 gi|336254822|ref|YP_004597929.1| - 1.5e-12 48.0 0.1 3.1e-12 47.0 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|336254822|ref|YP_004597929.1| - 6.6e-08 33.1 0.1 3.1e-07 31.0 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|336254822|ref|YP_004597929.1| - 4.1e-07 30.0 0.0 7.7e-07 29.1 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|336254822|ref|YP_004597929.1| - 9e-05 23.2 0.0 0.00025 21.7 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|336254822|ref|YP_004597929.1| - 0.0034 17.2 0.0 0.0058 16.4 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|336254822|ref|YP_004597929.1| - 0.004 16.5 0.0 0.0077 15.6 0.0 1.5 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_8 PF05148.15 gi|336254822|ref|YP_004597929.1| - 0.0046 16.8 0.0 0.0065 16.4 0.0 1.2 1 0 0 1 1 1 1 Hypothetical methyltransferase PASTA PF03793.19 gi|336254822|ref|YP_004597929.1| - 0.067 13.1 0.0 0.73 9.7 0.0 2.2 2 0 0 2 2 2 0 PASTA domain N6_N4_Mtase PF01555.18 gi|336254822|ref|YP_004597929.1| - 0.084 12.6 0.0 0.13 12.0 0.0 1.3 1 0 0 1 1 1 0 DNA methylase ABC_tran PF00005.27 gi|336254823|ref|YP_004597930.1| - 6.7e-42 143.3 0.0 1.7e-21 77.2 0.0 2.5 2 0 0 2 2 2 2 ABC transporter SMC_N PF02463.19 gi|336254823|ref|YP_004597930.1| - 5.5e-13 48.9 8.6 8.9e-05 22.0 1.0 4.1 3 1 0 3 3 3 3 RecF/RecN/SMC N terminal domain RLI PF04068.15 gi|336254823|ref|YP_004597930.1| - 3.8e-12 45.8 1.4 7.6e-12 44.9 1.4 1.5 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI AAA_21 PF13304.6 gi|336254823|ref|YP_004597930.1| - 4.6e-12 46.3 0.4 0.083 12.7 0.0 4.2 4 0 0 4 4 4 3 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|336254823|ref|YP_004597930.1| - 1.2e-07 32.3 0.6 0.0098 16.3 0.0 3.3 2 1 1 3 3 3 2 AAA ATPase domain AAA_22 PF13401.6 gi|336254823|ref|YP_004597930.1| - 2.8e-06 27.7 0.2 0.0073 16.6 0.0 3.0 2 2 0 2 2 2 2 AAA domain AAA_23 PF13476.6 gi|336254823|ref|YP_004597930.1| - 3.4e-06 27.7 1.7 0.066 13.7 0.0 2.7 2 1 0 2 2 2 2 AAA domain AAA PF00004.29 gi|336254823|ref|YP_004597930.1| - 1.1e-05 25.8 0.0 0.03 14.8 0.0 2.8 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) AAA_24 PF13479.6 gi|336254823|ref|YP_004597930.1| - 5.9e-05 22.9 0.0 0.069 12.9 0.0 2.4 2 0 0 2 2 2 2 AAA domain Rad17 PF03215.15 gi|336254823|ref|YP_004597930.1| - 6.1e-05 23.0 0.0 0.16 11.9 0.0 2.8 2 1 1 3 3 3 2 Rad17 P-loop domain RNA_helicase PF00910.22 gi|336254823|ref|YP_004597930.1| - 9.4e-05 22.8 0.0 0.61 10.5 0.0 2.7 2 0 0 2 2 2 2 RNA helicase AAA_33 PF13671.6 gi|336254823|ref|YP_004597930.1| - 0.00018 21.7 0.0 0.39 10.9 0.0 2.8 2 1 0 2 2 2 2 AAA domain RsgA_GTPase PF03193.16 gi|336254823|ref|YP_004597930.1| - 0.00038 20.4 0.0 0.73 9.7 0.0 2.4 2 0 0 2 2 2 2 RsgA GTPase AAA_14 PF13173.6 gi|336254823|ref|YP_004597930.1| - 0.00048 20.2 0.1 2.6 8.1 0.0 3.6 3 1 0 3 3 3 1 AAA domain Fer4 PF00037.27 gi|336254823|ref|YP_004597930.1| - 0.00057 19.6 1.6 0.00057 19.6 1.6 2.7 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_6 PF12837.7 gi|336254823|ref|YP_004597930.1| - 0.0017 18.3 12.2 0.0086 16.1 2.1 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain AAA_29 PF13555.6 gi|336254823|ref|YP_004597930.1| - 0.0019 17.9 0.4 1.5 8.6 0.1 2.4 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|336254823|ref|YP_004597930.1| - 0.0024 17.7 0.8 0.63 9.7 0.2 2.6 2 1 0 3 3 3 1 AAA ATPase domain NACHT PF05729.12 gi|336254823|ref|YP_004597930.1| - 0.0025 17.7 0.0 3 7.7 0.0 2.7 2 0 0 2 2 2 1 NACHT domain RuvB_N PF05496.12 gi|336254823|ref|YP_004597930.1| - 0.0032 17.2 0.2 1.8 8.3 0.1 3.0 3 0 0 3 3 3 1 Holliday junction DNA helicase RuvB P-loop domain AAA_18 PF13238.6 gi|336254823|ref|YP_004597930.1| - 0.0046 17.5 0.0 3.2 8.3 0.0 2.8 2 0 0 2 2 2 1 AAA domain NB-ARC PF00931.22 gi|336254823|ref|YP_004597930.1| - 0.012 14.9 0.0 0.9 8.7 0.0 2.4 2 0 0 2 2 2 0 NB-ARC domain AAA_25 PF13481.6 gi|336254823|ref|YP_004597930.1| - 0.02 14.5 0.7 13 5.3 0.0 3.5 3 0 0 3 3 3 0 AAA domain AAA_28 PF13521.6 gi|336254823|ref|YP_004597930.1| - 0.023 15.0 0.2 5 7.3 0.0 3.3 3 0 0 3 3 3 0 AAA domain MMR_HSR1 PF01926.23 gi|336254823|ref|YP_004597930.1| - 0.043 13.9 0.5 0.93 9.6 0.1 2.8 2 1 0 2 2 2 0 50S ribosome-binding GTPase Fer4_7 PF12838.7 gi|336254823|ref|YP_004597930.1| - 0.045 14.3 11.1 0.099 13.2 11.1 1.6 1 0 0 1 1 1 0 4Fe-4S dicluster domain AAA_5 PF07728.14 gi|336254823|ref|YP_004597930.1| - 0.049 13.6 0.1 11 6.0 0.0 2.9 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) DUF87 PF01935.17 gi|336254823|ref|YP_004597930.1| - 0.051 13.7 0.5 18 5.3 0.0 3.3 3 1 0 3 3 3 0 Helicase HerA, central domain SRP54 PF00448.22 gi|336254823|ref|YP_004597930.1| - 0.081 12.6 0.2 5.8 6.5 0.0 2.5 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_30 PF13604.6 gi|336254823|ref|YP_004597930.1| - 0.1 12.3 0.2 8.3 6.1 0.0 2.7 3 0 0 3 3 3 0 AAA domain NTPase_1 PF03266.15 gi|336254823|ref|YP_004597930.1| - 0.12 12.2 3.1 14 5.6 0.0 3.3 4 0 0 4 4 4 0 NTPase CLP1_P PF16575.5 gi|336254823|ref|YP_004597930.1| - 0.14 12.0 0.0 6.2 6.6 0.0 2.5 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop Fer4_10 PF13237.6 gi|336254823|ref|YP_004597930.1| - 0.21 11.7 12.2 0.56 10.4 1.6 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain IstB_IS21 PF01695.17 gi|336254823|ref|YP_004597930.1| - 0.25 11.0 0.6 2.8 7.6 0.0 2.3 2 0 0 2 2 2 0 IstB-like ATP binding protein Fer4_21 PF14697.6 gi|336254823|ref|YP_004597930.1| - 0.63 10.2 8.6 1.1 9.4 8.6 1.4 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|336254823|ref|YP_004597930.1| - 1.2 9.3 11.1 2.6 8.3 11.1 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|336254823|ref|YP_004597930.1| - 1.4 9.1 11.0 0.13 12.4 1.1 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.6 gi|336254823|ref|YP_004597930.1| - 4.5 8.1 7.1 21 5.9 7.1 2.3 1 1 0 1 1 1 0 4Fe-4S single cluster domain DUF2070 PF09843.9 gi|336254824|ref|YP_004597931.1| - 0.024 12.9 0.5 0.028 12.7 0.5 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) AMP-binding PF00501.28 gi|336254825|ref|YP_004597932.1| - 6.2e-99 331.5 0.2 7.2e-99 331.2 0.2 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|336254825|ref|YP_004597932.1| - 2e-19 70.3 0.1 4.6e-19 69.2 0.1 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain HTH_24 PF13412.6 gi|336254826|ref|YP_004597933.1| - 2.9e-06 26.7 0.0 4.1e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|336254826|ref|YP_004597933.1| - 0.00074 19.4 0.0 0.00085 19.2 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|336254826|ref|YP_004597933.1| - 0.00087 19.2 0.0 0.0013 18.7 0.0 1.2 1 0 0 1 1 1 1 HTH domain GntR PF00392.21 gi|336254826|ref|YP_004597933.1| - 0.0011 18.6 0.1 0.0019 17.8 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family MarR PF01047.22 gi|336254826|ref|YP_004597933.1| - 0.0018 18.1 0.0 0.0024 17.8 0.0 1.2 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|336254826|ref|YP_004597933.1| - 0.0025 17.7 0.1 0.0033 17.3 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.6 gi|336254826|ref|YP_004597933.1| - 0.0032 17.9 0.0 0.0045 17.4 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain TFIIE_alpha PF02002.17 gi|336254826|ref|YP_004597933.1| - 0.016 15.0 0.1 0.02 14.8 0.1 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_28 PF13518.6 gi|336254826|ref|YP_004597933.1| - 0.019 15.1 0.0 0.041 14.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_36 PF13730.6 gi|336254826|ref|YP_004597933.1| - 0.024 14.6 0.0 0.63 10.0 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_IclR PF09339.10 gi|336254826|ref|YP_004597933.1| - 0.024 14.4 0.0 0.054 13.3 0.0 1.5 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|336254826|ref|YP_004597933.1| - 0.026 14.6 0.0 0.04 14.0 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_12 PF08461.10 gi|336254826|ref|YP_004597933.1| - 0.035 14.1 0.1 0.09 12.7 0.1 1.7 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain PaaX PF07848.12 gi|336254826|ref|YP_004597933.1| - 0.037 14.2 0.0 0.054 13.7 0.0 1.2 1 0 0 1 1 1 0 PaaX-like protein HTH_5 PF01022.20 gi|336254826|ref|YP_004597933.1| - 0.047 13.6 0.0 0.065 13.1 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Replic_Relax PF13814.6 gi|336254826|ref|YP_004597933.1| - 0.18 11.8 0.0 0.21 11.6 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation Sulf_transp PF04143.14 gi|336254827|ref|YP_004597934.1| - 0.0027 17.3 3.3 0.0034 17.0 3.3 1.0 1 0 0 1 1 1 1 Sulphur transport Babuvirus_MP PF07234.11 gi|336254827|ref|YP_004597934.1| - 0.014 15.6 0.2 0.026 14.7 0.2 1.4 1 0 0 1 1 1 0 Movement and RNA silencing protein DUF3093 PF11292.8 gi|336254827|ref|YP_004597934.1| - 0.29 11.4 4.6 0.14 12.4 0.5 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3093) DUF805 PF05656.14 gi|336254827|ref|YP_004597934.1| - 6.4 7.2 8.0 30 5.1 5.3 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF805) NAD_synthase PF02540.17 gi|336254828|ref|YP_004597935.1| - 3e-72 242.7 0.0 3.5e-72 242.4 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.16 gi|336254828|ref|YP_004597935.1| - 1.3e-06 27.5 0.0 0.001 18.0 0.0 2.2 2 0 0 2 2 2 2 tRNA methyl transferase QueC PF06508.13 gi|336254828|ref|YP_004597935.1| - 0.00024 20.6 0.0 0.00079 19.0 0.0 1.7 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 gi|336254828|ref|YP_004597935.1| - 0.042 13.5 0.0 0.065 12.9 0.0 1.2 1 0 0 1 1 1 0 Asparagine synthase PAPS_reduct PF01507.19 gi|336254828|ref|YP_004597935.1| - 0.15 12.1 0.0 0.24 11.4 0.0 1.3 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family T2SSE PF00437.20 gi|336254829|ref|YP_004597936.1| - 8.2e-12 44.7 0.0 1.4e-11 44.0 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_16 PF13191.6 gi|336254829|ref|YP_004597936.1| - 0.00036 21.0 0.0 0.00094 19.6 0.0 1.7 1 0 0 1 1 1 1 AAA ATPase domain KH_1 PF00013.29 gi|336254829|ref|YP_004597936.1| - 0.00048 19.9 0.1 0.0016 18.2 0.1 1.9 1 0 0 1 1 1 1 KH domain Thymidylate_kin PF02223.17 gi|336254829|ref|YP_004597936.1| - 0.00082 19.1 0.0 0.0019 17.9 0.0 1.6 1 1 0 1 1 1 1 Thymidylate kinase AAA_25 PF13481.6 gi|336254829|ref|YP_004597936.1| - 0.0049 16.5 0.1 0.016 14.8 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|336254829|ref|YP_004597936.1| - 0.0074 16.5 0.0 0.075 13.2 0.0 2.3 2 0 0 2 2 2 1 AAA domain KH_2 PF07650.17 gi|336254829|ref|YP_004597936.1| - 0.0085 15.9 1.3 0.027 14.3 1.3 1.8 1 0 0 1 1 1 1 KH domain NTPase_1 PF03266.15 gi|336254829|ref|YP_004597936.1| - 0.012 15.5 0.0 0.033 14.1 0.0 1.7 1 0 0 1 1 1 0 NTPase AAA_18 PF13238.6 gi|336254829|ref|YP_004597936.1| - 0.013 16.1 0.7 0.026 15.1 0.0 1.9 2 0 0 2 2 1 0 AAA domain AAA_29 PF13555.6 gi|336254829|ref|YP_004597936.1| - 0.014 15.1 0.0 0.038 13.7 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain KH_5 PF13184.6 gi|336254829|ref|YP_004597936.1| - 0.016 15.3 0.2 0.043 13.9 0.2 1.7 1 0 0 1 1 1 0 NusA-like KH domain ATPase PF06745.13 gi|336254829|ref|YP_004597936.1| - 0.022 14.1 0.0 0.079 12.3 0.0 1.8 2 0 0 2 2 2 0 KaiC AAA_7 PF12775.7 gi|336254829|ref|YP_004597936.1| - 0.025 14.1 0.0 0.042 13.4 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_30 PF13604.6 gi|336254829|ref|YP_004597936.1| - 0.026 14.2 0.0 0.06 13.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|336254829|ref|YP_004597936.1| - 0.03 14.3 0.0 0.067 13.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) Zeta_toxin PF06414.12 gi|336254829|ref|YP_004597936.1| - 0.03 13.6 0.0 0.065 12.5 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_28 PF13521.6 gi|336254829|ref|YP_004597936.1| - 0.034 14.4 0.0 0.34 11.1 0.0 2.5 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|336254829|ref|YP_004597936.1| - 0.037 13.7 0.0 0.066 12.9 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA PF00004.29 gi|336254829|ref|YP_004597936.1| - 0.055 13.9 0.0 0.12 12.7 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 gi|336254829|ref|YP_004597936.1| - 0.063 13.2 0.0 0.14 12.0 0.0 1.6 1 0 0 1 1 1 0 NACHT domain Viral_helicase1 PF01443.18 gi|336254829|ref|YP_004597936.1| - 0.078 12.7 0.0 0.13 12.0 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase KTI12 PF08433.10 gi|336254829|ref|YP_004597936.1| - 0.079 12.4 0.0 0.14 11.5 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 Sigma54_activat PF00158.26 gi|336254829|ref|YP_004597936.1| - 0.083 12.6 0.0 0.18 11.5 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain AAA_17 PF13207.6 gi|336254829|ref|YP_004597936.1| - 0.1 13.1 0.3 2.5 8.6 0.0 3.2 3 1 1 4 4 4 0 AAA domain TsaE PF02367.17 gi|336254829|ref|YP_004597936.1| - 0.11 12.6 0.0 0.22 11.5 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE ZT_dimer PF16916.5 gi|336254829|ref|YP_004597936.1| - 0.11 12.6 0.0 0.47 10.6 0.0 2.1 1 0 0 1 1 1 0 Dimerisation domain of Zinc Transporter ABC_tran PF00005.27 gi|336254829|ref|YP_004597936.1| - 0.14 12.7 0.0 0.31 11.6 0.0 1.6 1 0 0 1 1 1 0 ABC transporter ATP_bind_1 PF03029.17 gi|336254829|ref|YP_004597936.1| - 0.16 11.7 0.0 0.27 11.0 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein RNA_helicase PF00910.22 gi|336254829|ref|YP_004597936.1| - 0.22 11.9 0.0 0.44 11.0 0.0 1.5 1 0 0 1 1 1 0 RNA helicase NB-ARC PF00931.22 gi|336254829|ref|YP_004597936.1| - 0.22 10.7 0.0 0.4 9.8 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain HTH_20 PF12840.7 gi|336254830|ref|YP_004597937.1| - 0.00048 20.1 1.3 0.0055 16.7 0.5 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|336254830|ref|YP_004597937.1| - 0.0015 18.4 0.0 0.0033 17.3 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|336254830|ref|YP_004597937.1| - 0.0029 17.4 0.1 0.0047 16.8 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|336254830|ref|YP_004597937.1| - 0.037 13.6 0.0 0.072 12.7 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|336254830|ref|YP_004597937.1| - 0.06 13.3 0.0 0.1 12.6 0.0 1.3 1 0 0 1 1 1 0 HTH domain HTH_DeoR PF08220.12 gi|336254830|ref|YP_004597937.1| - 0.066 13.0 0.0 0.11 12.3 0.0 1.3 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain DUF1724 PF08350.10 gi|336254830|ref|YP_004597937.1| - 0.12 12.5 0.1 2.1 8.6 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1724) RP-C PF03428.13 gi|336254830|ref|YP_004597937.1| - 0.15 11.7 0.0 0.29 10.8 0.0 1.5 1 0 0 1 1 1 0 Replication protein C N-terminal domain Dimerisation2 PF16864.5 gi|336254830|ref|YP_004597937.1| - 0.18 11.8 0.0 0.29 11.2 0.0 1.3 1 0 0 1 1 1 0 Dimerisation domain TrmB PF01978.19 gi|336254830|ref|YP_004597937.1| - 0.2 11.6 0.0 0.46 10.4 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Peptidase_M20 PF01546.28 gi|336254831|ref|YP_004597938.1| - 1.6e-27 96.5 4.9 2.1e-27 96.2 4.9 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|336254831|ref|YP_004597938.1| - 1.4e-14 53.9 0.5 1.2e-13 50.9 0.1 2.2 2 0 0 2 2 2 1 Peptidase dimerisation domain TFIIS_C PF01096.18 gi|336254832|ref|YP_004597939.1| - 8.2e-05 22.4 3.3 0.019 14.8 0.5 2.3 2 0 0 2 2 2 2 Transcription factor S-II (TFIIS) HypA PF01155.19 gi|336254832|ref|YP_004597939.1| - 0.00022 21.2 0.7 0.00027 21.0 0.7 1.2 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF35_N PF12172.8 gi|336254832|ref|YP_004597939.1| - 0.00062 19.6 1.8 0.00098 19.0 1.8 1.3 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) TackOD1 PF18551.1 gi|336254832|ref|YP_004597939.1| - 0.001 18.8 0.2 0.0012 18.5 0.2 1.1 1 0 0 1 1 1 1 Thaumarchaeal output domain 1 Zn-ribbon_8 PF09723.10 gi|336254832|ref|YP_004597939.1| - 0.0011 19.0 4.6 0.0028 17.7 4.6 1.7 1 1 0 1 1 1 1 Zinc ribbon domain YhfH PF14149.6 gi|336254832|ref|YP_004597939.1| - 0.0019 18.1 3.2 1.4 9.0 0.1 3.1 2 1 1 3 3 3 1 YhfH-like protein Nop10p PF04135.12 gi|336254832|ref|YP_004597939.1| - 0.0022 18.0 0.4 0.0036 17.3 0.4 1.3 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family DZR PF12773.7 gi|336254832|ref|YP_004597939.1| - 0.0051 16.8 1.7 0.0072 16.3 1.7 1.3 1 0 0 1 1 1 1 Double zinc ribbon Lar_restr_allev PF14354.6 gi|336254832|ref|YP_004597939.1| - 0.013 15.9 2.5 0.54 10.7 0.1 2.3 1 1 1 2 2 2 0 Restriction alleviation protein Lar DNA_ligase_ZBD PF03119.16 gi|336254832|ref|YP_004597939.1| - 0.014 15.4 3.8 0.018 15.1 0.2 2.3 2 1 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-C3HC4_3 PF13920.6 gi|336254832|ref|YP_004597939.1| - 0.017 15.0 0.6 0.024 14.5 0.6 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) TF_Zn_Ribbon PF08271.12 gi|336254832|ref|YP_004597939.1| - 0.027 14.0 1.6 5.7 6.5 0.2 2.6 2 1 0 2 2 2 0 TFIIB zinc-binding zinc-ribbons_6 PF07191.12 gi|336254832|ref|YP_004597939.1| - 0.028 14.4 1.5 0.036 14.0 1.5 1.2 1 0 0 1 1 1 0 zinc-ribbons zf-ribbon_3 PF13248.6 gi|336254832|ref|YP_004597939.1| - 0.028 13.8 1.3 1.3 8.5 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_9 PF14369.6 gi|336254832|ref|YP_004597939.1| - 0.028 14.7 0.6 9.6 6.6 0.1 2.5 2 0 0 2 2 2 0 zinc-ribbon Rubredoxin_2 PF18073.1 gi|336254832|ref|YP_004597939.1| - 0.041 13.6 2.9 0.064 13.0 2.9 1.3 1 0 0 1 1 1 0 Rubredoxin metal binding domain Nudix_N_2 PF14803.6 gi|336254832|ref|YP_004597939.1| - 0.059 13.3 1.4 5 7.1 0.2 2.3 2 0 0 2 2 2 0 Nudix N-terminal GFA PF04828.14 gi|336254832|ref|YP_004597939.1| - 0.069 13.5 1.6 0.74 10.2 1.6 2.0 1 1 0 1 1 1 0 Glutathione-dependent formaldehyde-activating enzyme zf-C3HC4_2 PF13923.6 gi|336254832|ref|YP_004597939.1| - 0.071 13.0 1.4 0.1 12.5 1.4 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) RE_MamI PF09567.10 gi|336254832|ref|YP_004597939.1| - 0.094 12.3 0.2 0.1 12.2 0.2 1.2 1 0 0 1 1 1 0 MamI restriction endonuclease Ogr_Delta PF04606.12 gi|336254832|ref|YP_004597939.1| - 0.099 12.6 1.9 2.4 8.2 0.2 2.2 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf_UBZ PF18439.1 gi|336254832|ref|YP_004597939.1| - 0.24 11.0 2.7 0.61 9.7 0.2 2.1 1 1 1 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-Mss51 PF13824.6 gi|336254832|ref|YP_004597939.1| - 0.34 11.0 3.4 2.4 8.3 0.2 2.2 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 OrfB_Zn_ribbon PF07282.11 gi|336254832|ref|YP_004597939.1| - 0.45 10.5 3.4 9.9 6.2 0.5 2.2 1 1 1 2 2 2 0 Putative transposase DNA-binding domain Zn_ribbon_SprT PF17283.2 gi|336254832|ref|YP_004597939.1| - 0.72 9.8 3.7 1.9 8.5 0.8 2.1 2 0 0 2 2 2 0 SprT-like zinc ribbon domain zf-C2H2 PF00096.26 gi|336254832|ref|YP_004597939.1| - 4.8 7.8 4.5 1.1 9.9 0.5 1.9 1 1 1 2 2 2 0 Zinc finger, C2H2 type Yip1 PF04893.17 gi|336254833|ref|YP_004597940.1| - 1.9 8.2 28.3 2.2 8.0 28.3 1.1 1 0 0 1 1 1 0 Yip1 domain Peptidase_M32 PF02074.15 gi|336254834|ref|YP_004597941.1| - 1.6e-180 601.1 0.0 1.8e-180 600.9 0.0 1.0 1 0 0 1 1 1 1 Carboxypeptidase Taq (M32) metallopeptidase DsrC PF04358.13 gi|336254834|ref|YP_004597941.1| - 0.19 12.2 0.2 0.75 10.3 0.1 2.0 2 0 0 2 2 2 0 DsrC like protein adh_short PF00106.25 gi|336254836|ref|YP_004597943.1| - 4.6e-52 176.3 0.1 6.1e-52 175.9 0.1 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|336254836|ref|YP_004597943.1| - 1.7e-41 142.4 0.4 2.2e-41 142.0 0.4 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|336254836|ref|YP_004597943.1| - 1.3e-12 48.0 0.0 2e-12 47.4 0.0 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|336254836|ref|YP_004597943.1| - 0.0006 19.4 0.1 0.0014 18.1 0.1 1.7 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family ADH_zinc_N PF00107.26 gi|336254836|ref|YP_004597943.1| - 0.00072 19.5 0.3 0.0029 17.6 0.2 2.1 1 1 0 1 1 1 1 Zinc-binding dehydrogenase Polysacc_synt_2 PF02719.15 gi|336254836|ref|YP_004597943.1| - 0.0069 15.6 0.0 0.012 14.8 0.0 1.4 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein FeS PF04060.13 gi|336254836|ref|YP_004597943.1| - 0.44 10.2 1.2 0.95 9.2 1.2 1.5 1 0 0 1 1 1 0 Putative Fe-S cluster CSD PF00313.22 gi|336254838|ref|YP_004597945.1| - 2.7e-19 68.8 0.4 2.9e-19 68.7 0.4 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain OB_RNB PF08206.11 gi|336254838|ref|YP_004597945.1| - 0.0052 16.5 1.7 0.007 16.0 1.7 1.3 1 0 0 1 1 1 1 Ribonuclease B OB domain S1-like PF14444.6 gi|336254838|ref|YP_004597945.1| - 0.066 13.2 0.2 0.096 12.6 0.2 1.3 1 1 0 1 1 1 0 S1-like Peptidase_M10_C PF08548.11 gi|336254838|ref|YP_004597945.1| - 0.067 13.1 0.3 0.074 12.9 0.3 1.1 1 0 0 1 1 1 0 Peptidase M10 serralysin C terminal Rho_RNA_bind PF07497.12 gi|336254838|ref|YP_004597945.1| - 0.081 12.8 0.0 0.092 12.6 0.0 1.1 1 0 0 1 1 1 0 Rho termination factor, RNA-binding domain Peripla_BP_2 PF01497.18 gi|336254839|ref|YP_004597946.1| - 1.2e-22 80.7 0.6 1.6e-22 80.3 0.6 1.2 1 0 0 1 1 1 1 Periplasmic binding protein DUF883 PF05957.13 gi|336254839|ref|YP_004597946.1| - 0.059 14.0 0.5 0.12 13.0 0.5 1.5 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF883) DUF2070 PF09843.9 gi|336254839|ref|YP_004597946.1| - 0.34 9.2 0.3 0.46 8.7 0.3 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) Prok-JAB PF14464.6 gi|336254840|ref|YP_004597947.1| - 3.2e-20 72.0 0.1 5.1e-20 71.4 0.1 1.3 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain JAB PF01398.21 gi|336254840|ref|YP_004597947.1| - 2e-06 27.8 0.0 2.9e-06 27.3 0.0 1.2 1 0 0 1 1 1 1 JAB1/Mov34/MPN/PAD-1 ubiquitin protease ZapB PF06005.12 gi|336254842|ref|YP_004597949.1| - 0.048 14.1 1.7 8.3 6.9 0.0 2.1 2 0 0 2 2 2 0 Cell division protein ZapB Sulfatase PF00884.23 gi|336254843|ref|YP_004597950.1| - 2.1e-47 162.0 0.1 2.9e-47 161.5 0.1 1.2 1 0 0 1 1 1 1 Sulfatase DUF4976 PF16347.5 gi|336254843|ref|YP_004597950.1| - 3.4e-12 46.5 0.0 6e-12 45.7 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4976) Phosphodiest PF01663.22 gi|336254843|ref|YP_004597950.1| - 4.1e-10 39.8 0.3 0.00011 21.9 0.0 2.3 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF229 PF02995.17 gi|336254843|ref|YP_004597950.1| - 0.01 14.5 0.1 0.015 14.0 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF229) DUF1501 PF07394.12 gi|336254843|ref|YP_004597950.1| - 0.16 11.0 1.2 0.63 9.0 0.4 2.2 3 0 0 3 3 3 0 Protein of unknown function (DUF1501) DoxX PF07681.12 gi|336254845|ref|YP_004597952.1| - 2e-07 31.5 10.6 2e-07 31.5 10.6 1.6 2 0 0 2 2 2 1 DoxX DoxD PF04173.13 gi|336254845|ref|YP_004597952.1| - 8.4e-06 25.8 7.9 4.8e-05 23.3 7.9 1.9 1 1 0 1 1 1 1 TQO small subunit DoxD tRNA-synt_His PF13393.6 gi|336254846|ref|YP_004597953.1| - 3.2e-53 181.0 0.1 3.9e-53 180.7 0.1 1.1 1 0 0 1 1 1 1 Histidyl-tRNA synthetase HGTP_anticodon PF03129.20 gi|336254846|ref|YP_004597953.1| - 1.1e-13 51.2 1.1 2e-13 50.3 0.2 1.8 2 0 0 2 2 2 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|336254846|ref|YP_004597953.1| - 1e-08 35.4 0.0 1.3e-08 35.1 0.0 1.3 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) tRNA-synt_2d PF01409.20 gi|336254846|ref|YP_004597953.1| - 0.0031 17.0 0.0 0.006 16.1 0.0 1.4 1 1 0 1 1 1 1 tRNA synthetases class II core domain (F) Asn_synthase PF00733.21 gi|336254847|ref|YP_004597954.1| - 0.0014 18.3 0.1 0.0018 18.0 0.1 1.2 1 0 0 1 1 1 1 Asparagine synthase dsDNA_bind PF01984.20 gi|336254848|ref|YP_004597955.1| - 2.1e-26 92.4 14.2 2.4e-26 92.2 14.2 1.0 1 0 0 1 1 1 1 Double-stranded DNA-binding domain PCI PF01399.27 gi|336254848|ref|YP_004597955.1| - 0.011 16.2 0.1 0.02 15.4 0.1 1.8 1 1 0 1 1 1 0 PCI domain T3SSipB PF16535.5 gi|336254848|ref|YP_004597955.1| - 0.12 12.8 10.3 0.057 13.9 7.6 1.6 1 1 1 2 2 2 0 Type III cell invasion protein SipB VAPB_antitox PF02697.14 gi|336254848|ref|YP_004597955.1| - 2.3 9.1 6.5 71 4.3 0.4 3.0 3 0 0 3 3 3 0 Putative antitoxin Ribosomal_S19e PF01090.19 gi|336254849|ref|YP_004597956.1| - 3.1e-46 156.5 0.0 3.6e-46 156.3 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e GntR PF00392.21 gi|336254849|ref|YP_004597956.1| - 0.016 14.8 0.2 0.094 12.4 0.1 2.3 3 0 0 3 3 3 0 Bacterial regulatory proteins, gntR family Rrf2 PF02082.20 gi|336254849|ref|YP_004597956.1| - 0.036 14.4 0.0 0.33 11.3 0.0 2.1 2 0 0 2 2 2 0 Transcriptional regulator HTH_12 PF08461.10 gi|336254849|ref|YP_004597956.1| - 0.13 12.2 1.0 0.67 9.9 0.1 2.4 3 0 0 3 3 3 0 Ribonuclease R winged-helix domain AIRS PF00586.24 gi|336254850|ref|YP_004597957.1| - 4.4e-19 68.9 1.9 1e-18 67.7 1.9 1.6 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.22 gi|336254850|ref|YP_004597957.1| - 3.8e-16 59.6 0.7 9.9e-16 58.3 0.1 1.8 2 0 0 2 2 2 1 AIR synthase related protein, C-terminal domain Peptidase_M50 PF02163.22 gi|336254851|ref|YP_004597958.1| - 2.1e-13 50.1 10.1 6.4e-07 28.9 0.3 2.3 1 1 1 2 2 2 2 Peptidase family M50 MoaE PF02391.17 gi|336254854|ref|YP_004597961.1| - 1.9e-24 86.1 0.4 3.7e-24 85.2 0.4 1.5 1 0 0 1 1 1 1 MoaE protein DUF3906 PF13046.6 gi|336254854|ref|YP_004597961.1| - 0.035 14.2 0.1 0.072 13.2 0.1 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3906) PGA_cap PF09587.10 gi|336254855|ref|YP_004597962.1| - 2.8e-65 220.3 0.0 3.3e-65 220.1 0.0 1.1 1 0 0 1 1 1 1 Bacterial capsule synthesis protein PGA_cap Glyco_transf_4 PF13439.6 gi|336254855|ref|YP_004597962.1| - 0.013 15.5 0.0 0.032 14.2 0.0 1.7 1 0 0 1 1 1 0 Glycosyltransferase Family 4 AA_kinase PF00696.28 gi|336254856|ref|YP_004597963.1| - 1.4e-26 93.5 5.2 3.2e-26 92.4 5.2 1.5 1 1 0 1 1 1 1 Amino acid kinase family DUF2844 PF11005.8 gi|336254856|ref|YP_004597963.1| - 0.015 15.4 0.0 0.083 12.9 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2844) tRNA-synt_1f PF01921.18 gi|336254857|ref|YP_004597964.1| - 1.1e-99 333.8 0.0 1.5e-99 333.4 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (K) tRNA-synt_1g PF09334.11 gi|336254857|ref|YP_004597964.1| - 9.4e-09 34.5 0.0 6.4e-07 28.4 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|336254857|ref|YP_004597964.1| - 0.0011 18.3 0.0 0.013 14.8 0.0 2.3 3 0 0 3 3 3 1 tRNA synthetases class I (C) catalytic domain tRNA-synt_1b PF00579.25 gi|336254857|ref|YP_004597964.1| - 0.04 13.2 0.0 4.8 6.4 0.0 2.2 2 0 0 2 2 2 0 tRNA synthetases class I (W and Y) Peptidase_M50 PF02163.22 gi|336254858|ref|YP_004597965.1| - 1.7e-22 79.9 0.0 5.3e-22 78.3 0.0 1.8 1 1 0 1 1 1 1 Peptidase family M50 PDZ_2 PF13180.6 gi|336254858|ref|YP_004597965.1| - 4.8e-22 78.1 2.9 2.3e-07 31.0 0.1 3.3 1 1 2 3 3 3 3 PDZ domain PDZ_6 PF17820.1 gi|336254858|ref|YP_004597965.1| - 5.6e-13 48.5 10.3 2.3e-08 33.8 0.6 3.1 4 0 0 4 4 4 2 PDZ domain PDZ PF00595.24 gi|336254858|ref|YP_004597965.1| - 5e-10 39.6 1.6 3.9e-06 27.1 0.2 2.5 1 1 0 2 2 2 2 PDZ domain Tricorn_PDZ PF14685.6 gi|336254858|ref|YP_004597965.1| - 2.1e-08 34.0 3.8 0.0024 17.8 0.2 3.4 2 1 1 3 3 3 3 Tricorn protease PDZ domain GRASP55_65 PF04495.14 gi|336254858|ref|YP_004597965.1| - 0.0048 17.2 0.0 0.44 10.9 0.0 2.5 1 1 0 2 2 2 1 GRASP55/65 PDZ-like domain Arteri_nsp7a PF16749.5 gi|336254858|ref|YP_004597965.1| - 0.036 14.3 0.3 0.12 12.6 0.1 1.9 2 0 0 2 2 2 0 Arterivirus nonstructural protein 7 alpha PadR PF03551.14 gi|336254859|ref|YP_004597966.1| - 1.5e-24 85.7 0.3 2.4e-24 85.1 0.3 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family RTP PF02334.16 gi|336254859|ref|YP_004597966.1| - 0.0086 16.7 0.1 0.013 16.1 0.1 1.3 1 0 0 1 1 1 1 Replication terminator protein CDT1 PF08839.11 gi|336254859|ref|YP_004597966.1| - 0.054 13.8 0.0 0.095 13.0 0.0 1.3 1 1 0 1 1 1 0 DNA replication factor CDT1 like TrmB PF01978.19 gi|336254859|ref|YP_004597966.1| - 0.062 13.2 0.0 0.22 11.5 0.0 2.0 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF505 PF04458.12 gi|336254859|ref|YP_004597966.1| - 0.15 10.4 0.3 0.19 10.0 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) Chlor_dismutase PF06778.12 gi|336254860|ref|YP_004597967.1| - 4.1e-64 215.8 0.0 7.1e-64 215.0 0.0 1.4 1 0 0 1 1 1 1 Chlorite dismutase ABM PF03992.16 gi|336254860|ref|YP_004597967.1| - 2.8e-07 30.6 0.2 2.8e-07 30.6 0.2 4.0 4 0 0 4 4 4 1 Antibiotic biosynthesis monooxygenase DUF5493 PF17597.2 gi|336254861|ref|YP_004597968.1| - 0.088 13.1 1.1 0.1 12.9 1.1 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5493) DUF2933 PF11666.8 gi|336254861|ref|YP_004597968.1| - 0.35 10.9 3.8 0.65 10.1 0.4 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF2933) DUF5611 PF18446.1 gi|336254862|ref|YP_004597969.1| - 1.2e-30 106.4 0.1 1.4e-30 106.2 0.1 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF5611) zinc_ribbon_9 PF14369.6 gi|336254863|ref|YP_004597970.1| - 3.1 8.2 6.3 2.4 8.5 2.7 2.7 2 1 1 3 3 3 0 zinc-ribbon GntR PF00392.21 gi|336254864|ref|YP_004597971.1| - 0.019 14.6 0.0 0.033 13.9 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family FANCI_S1-cap PF14674.6 gi|336254864|ref|YP_004597971.1| - 0.15 12.2 0.1 0.24 11.5 0.1 1.3 1 0 0 1 1 1 0 FANCI solenoid 1 cap DUF2122 PF09895.9 gi|336254864|ref|YP_004597971.1| - 0.22 11.9 1.2 0.62 10.5 0.2 1.9 1 1 0 2 2 2 0 RecB-family nuclease (DUF2122) GCV_T PF01571.21 gi|336254865|ref|YP_004597972.1| - 6.9e-40 137.0 0.0 9.3e-40 136.6 0.0 1.1 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.11 gi|336254865|ref|YP_004597972.1| - 4.3e-14 52.2 0.0 9.1e-14 51.1 0.0 1.6 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain DUF389 PF04087.14 gi|336254867|ref|YP_004597974.1| - 1.5e-31 109.4 17.6 1.5e-31 109.4 17.6 1.9 3 0 0 3 3 3 1 Domain of unknown function (DUF389) Bacteriocin_IIc PF10439.9 gi|336254868|ref|YP_004597975.1| - 0.0019 18.3 6.7 0.0026 17.9 6.7 1.2 1 0 0 1 1 1 1 Bacteriocin class II with double-glycine leader peptide DUF3482 PF11981.8 gi|336254868|ref|YP_004597975.1| - 0.091 12.1 4.0 0.097 12.0 4.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3482) Romo1 PF10247.9 gi|336254868|ref|YP_004597975.1| - 2.1 8.8 6.4 3.9 7.9 2.1 2.1 2 0 0 2 2 2 0 Reactive mitochondrial oxygen species modulator 1 FAD_binding_4 PF01565.23 gi|336254869|ref|YP_004597976.1| - 1.5e-34 118.7 4.0 2.1e-34 118.2 4.0 1.2 1 0 0 1 1 1 1 FAD binding domain BBE PF08031.12 gi|336254869|ref|YP_004597976.1| - 5.1e-10 39.3 0.0 9.9e-10 38.4 0.0 1.5 1 0 0 1 1 1 1 Berberine and berberine like FAD_binding_3 PF01494.19 gi|336254870|ref|YP_004597977.1| - 1.4e-10 41.0 5.3 2.2e-08 33.8 1.9 2.8 2 1 0 2 2 2 2 FAD binding domain Lycopene_cycl PF05834.12 gi|336254870|ref|YP_004597977.1| - 1.2e-07 31.2 0.2 0.0018 17.4 0.0 2.1 2 0 0 2 2 2 2 Lycopene cyclase protein Pyr_redox_2 PF07992.14 gi|336254870|ref|YP_004597977.1| - 1.5e-05 24.4 0.7 0.00031 20.1 0.1 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|336254870|ref|YP_004597977.1| - 0.00046 19.9 7.3 0.0012 18.5 0.5 2.8 1 1 1 3 3 3 1 FAD dependent oxidoreductase FAD_oxidored PF12831.7 gi|336254870|ref|YP_004597977.1| - 0.0024 17.3 0.5 0.0033 16.9 0.5 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|336254870|ref|YP_004597977.1| - 0.0097 15.0 1.1 0.031 13.4 0.2 2.0 2 0 0 2 2 2 1 FAD binding domain HI0933_like PF03486.14 gi|336254870|ref|YP_004597977.1| - 0.026 13.2 0.1 0.12 11.1 0.0 1.8 2 0 0 2 2 2 0 HI0933-like protein Trp_halogenase PF04820.14 gi|336254870|ref|YP_004597977.1| - 0.043 12.6 0.5 0.26 10.1 0.1 2.0 2 0 0 2 2 2 0 Tryptophan halogenase Pyr_redox_3 PF13738.6 gi|336254870|ref|YP_004597977.1| - 0.049 12.9 0.3 0.68 9.1 0.1 2.0 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|336254870|ref|YP_004597977.1| - 0.075 13.3 1.1 1.2 9.4 0.3 3.0 3 1 0 3 3 3 0 NAD(P)-binding Rossmann-like domain DUF359 PF04019.12 gi|336254872|ref|YP_004597979.1| - 2.3e-41 140.4 0.2 3.1e-41 139.9 0.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF359) DUF2939 PF11159.8 gi|336254872|ref|YP_004597979.1| - 0.011 16.2 0.1 0.024 15.0 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2939) Spt4 PF06093.13 gi|336254873|ref|YP_004597980.1| - 1e-13 51.1 0.1 1.3e-13 50.9 0.1 1.1 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger DZR PF12773.7 gi|336254873|ref|YP_004597980.1| - 0.0019 18.2 0.7 0.0024 17.9 0.7 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-RRN7 PF11781.8 gi|336254873|ref|YP_004597980.1| - 0.061 13.0 3.9 2.2 8.0 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 SHS2_Rpb7-N PF03876.17 gi|336254874|ref|YP_004597981.1| - 2.5e-15 56.6 0.0 4e-15 55.9 0.0 1.3 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.23 gi|336254874|ref|YP_004597981.1| - 6.4e-12 45.7 0.2 1.3e-11 44.6 0.2 1.6 1 0 0 1 1 1 1 S1 RNA binding domain RNA_pol_Rbc25 PF08292.12 gi|336254874|ref|YP_004597981.1| - 0.068 13.4 0.0 0.1 12.8 0.0 1.3 1 0 0 1 1 1 0 RNA polymerase III subunit Rpc25 PIN_9 PF18477.1 gi|336254875|ref|YP_004597982.1| - 1.2e-38 131.9 0.5 1.4e-38 131.7 0.5 1.0 1 0 0 1 1 1 1 PIN like domain DUF188 PF02639.14 gi|336254875|ref|YP_004597982.1| - 2.3e-07 30.5 0.1 3.2e-07 30.1 0.1 1.2 1 0 0 1 1 1 1 Uncharacterized BCR, YaiI/YqxD family COG1671 PIN_3 PF13470.6 gi|336254875|ref|YP_004597982.1| - 0.019 15.7 0.9 0.042 14.6 0.9 1.6 1 1 0 1 1 1 0 PIN domain PIN PF01850.21 gi|336254875|ref|YP_004597982.1| - 0.082 13.4 0.1 0.28 11.7 0.1 1.7 1 1 1 2 2 2 0 PIN domain GTP_EFTU PF00009.27 gi|336254876|ref|YP_004597983.1| - 5.5e-30 104.3 0.9 3.7e-29 101.7 0.9 1.9 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.11 gi|336254876|ref|YP_004597983.1| - 1.8e-29 101.8 0.0 3.7e-29 100.8 0.0 1.5 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU_D2 PF03144.25 gi|336254876|ref|YP_004597983.1| - 3e-08 34.0 1.2 3e-08 34.0 1.2 2.0 2 0 0 2 2 2 1 Elongation factor Tu domain 2 RsgA_GTPase PF03193.16 gi|336254876|ref|YP_004597983.1| - 7.3e-05 22.7 0.2 0.0067 16.3 0.0 2.2 2 0 0 2 2 2 1 RsgA GTPase MMR_HSR1 PF01926.23 gi|336254876|ref|YP_004597983.1| - 0.00012 22.1 0.0 0.00023 21.2 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase PduV-EutP PF10662.9 gi|336254876|ref|YP_004597983.1| - 0.043 13.5 0.1 0.25 11.1 0.0 2.1 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation FeoB_N PF02421.18 gi|336254876|ref|YP_004597983.1| - 0.071 12.6 0.5 4.2 6.9 0.0 2.5 1 1 1 2 2 2 0 Ferrous iron transport protein B MMR_HSR1_Xtn PF16897.5 gi|336254876|ref|YP_004597983.1| - 0.1 12.6 0.0 0.19 11.8 0.0 1.4 1 0 0 1 1 1 0 C-terminal region of MMR_HSR1 domain SRPRB PF09439.10 gi|336254876|ref|YP_004597983.1| - 0.12 11.7 0.0 7.5 5.9 0.0 2.2 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit DUF2171 PF09939.9 gi|336254878|ref|YP_004597985.1| - 2.9e-05 24.3 1.2 0.00011 22.5 1.2 1.8 1 1 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2171) PRC PF05239.16 gi|336254878|ref|YP_004597985.1| - 0.045 13.8 0.8 0.077 13.1 0.8 1.6 1 1 0 1 1 1 0 PRC-barrel domain Lactamase_B_2 PF12706.7 gi|336254879|ref|YP_004597986.1| - 5.9e-22 78.2 0.3 7.6e-22 77.8 0.3 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|336254879|ref|YP_004597986.1| - 0.00023 21.2 4.0 0.00037 20.6 4.0 1.5 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Mur_ligase_M PF08245.12 gi|336254879|ref|YP_004597986.1| - 0.14 12.1 0.0 0.23 11.4 0.0 1.2 1 0 0 1 1 1 0 Mur ligase middle domain NTP_transf_2 PF01909.23 gi|336254880|ref|YP_004597987.1| - 0.13 12.5 0.1 0.16 12.3 0.1 1.2 1 0 0 1 1 1 0 Nucleotidyltransferase domain AAA PF00004.29 gi|336254882|ref|YP_004597989.1| - 1.7e-38 132.0 0.0 4e-38 130.8 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|336254882|ref|YP_004597989.1| - 9.6e-10 38.1 0.1 2.8e-09 36.6 0.1 1.8 1 0 0 1 1 1 1 AAA+ lid domain AAA_5 PF07728.14 gi|336254882|ref|YP_004597989.1| - 3.8e-05 23.7 0.0 0.00015 21.8 0.0 2.1 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_18 PF13238.6 gi|336254882|ref|YP_004597989.1| - 0.00016 22.2 0.3 0.0055 17.2 0.0 2.8 3 0 0 3 3 2 1 AAA domain AAA_22 PF13401.6 gi|336254882|ref|YP_004597989.1| - 0.00026 21.3 1.4 0.13 12.5 0.4 3.2 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|336254882|ref|YP_004597989.1| - 0.00039 20.9 1.1 0.012 15.9 0.7 3.1 1 1 1 2 2 2 1 AAA ATPase domain AAA_7 PF12775.7 gi|336254882|ref|YP_004597989.1| - 0.00042 19.9 0.0 0.0011 18.5 0.0 1.7 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_2 PF07724.14 gi|336254882|ref|YP_004597989.1| - 0.00049 20.2 0.6 0.0015 18.7 0.0 2.1 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.12 gi|336254882|ref|YP_004597989.1| - 0.00098 18.9 0.0 0.0019 17.9 0.0 1.6 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_28 PF13521.6 gi|336254882|ref|YP_004597989.1| - 0.0016 18.7 0.0 0.0061 16.8 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|336254882|ref|YP_004597989.1| - 0.003 17.2 0.0 0.026 14.1 0.0 2.3 1 1 1 2 2 2 1 AAA domain AAA_33 PF13671.6 gi|336254882|ref|YP_004597989.1| - 0.0041 17.3 0.4 0.023 14.8 0.0 2.5 2 2 0 2 2 2 1 AAA domain TIP49 PF06068.13 gi|336254882|ref|YP_004597989.1| - 0.012 14.8 0.0 0.025 13.8 0.0 1.5 1 0 0 1 1 1 0 TIP49 P-loop domain AAA_17 PF13207.6 gi|336254882|ref|YP_004597989.1| - 0.013 15.9 0.2 0.055 13.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|336254882|ref|YP_004597989.1| - 0.014 15.1 0.1 0.073 12.8 0.0 2.3 1 1 2 3 3 3 0 IstB-like ATP binding protein DUF815 PF05673.13 gi|336254882|ref|YP_004597989.1| - 0.022 14.0 0.1 0.041 13.0 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_11 PF13086.6 gi|336254882|ref|YP_004597989.1| - 0.025 14.3 0.0 0.047 13.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|336254882|ref|YP_004597989.1| - 0.051 14.0 0.0 0.097 13.1 0.0 1.5 1 0 0 1 1 1 0 RNA helicase Mg_chelatase PF01078.21 gi|336254882|ref|YP_004597989.1| - 0.052 12.9 0.0 0.095 12.1 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI T2SSE PF00437.20 gi|336254882|ref|YP_004597989.1| - 0.055 12.5 0.0 0.14 11.2 0.0 1.6 1 0 0 1 1 1 0 Type II/IV secretion system protein TniB PF05621.11 gi|336254882|ref|YP_004597989.1| - 0.06 12.8 0.0 6.4 6.1 0.0 2.4 1 1 0 2 2 2 0 Bacterial TniB protein AAA_3 PF07726.11 gi|336254882|ref|YP_004597989.1| - 0.061 13.2 0.3 0.14 12.0 0.0 1.8 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) ABC_tran PF00005.27 gi|336254882|ref|YP_004597989.1| - 0.066 13.7 0.0 0.31 11.6 0.0 2.2 2 1 0 2 2 2 0 ABC transporter MMR_HSR1 PF01926.23 gi|336254882|ref|YP_004597989.1| - 0.1 12.7 0.0 0.24 11.5 0.0 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase ResIII PF04851.15 gi|336254882|ref|YP_004597989.1| - 0.12 12.4 0.0 0.22 11.5 0.0 1.5 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit Usp PF00582.26 gi|336254883|ref|YP_004597990.1| - 9.7e-14 52.1 0.0 2.6e-12 47.4 0.0 2.0 1 1 0 1 1 1 1 Universal stress protein family DAGK_cat PF00781.24 gi|336254883|ref|YP_004597990.1| - 0.041 13.5 0.1 0.11 12.2 0.0 1.6 1 1 1 2 2 2 0 Diacylglycerol kinase catalytic domain SBP_bac_5 PF00496.22 gi|336254883|ref|YP_004597990.1| - 0.049 12.6 0.0 0.055 12.4 0.0 1.0 1 0 0 1 1 1 0 Bacterial extracellular solute-binding proteins, family 5 Middle FMN_red PF03358.15 gi|336254883|ref|YP_004597990.1| - 0.051 13.3 0.0 0.074 12.8 0.0 1.3 1 0 0 1 1 1 0 NADPH-dependent FMN reductase Z1 PF10593.9 gi|336254883|ref|YP_004597990.1| - 0.074 12.5 0.0 0.092 12.2 0.0 1.1 1 0 0 1 1 1 0 Z1 domain Acetyltransf_1 PF00583.25 gi|336254884|ref|YP_004597991.1| - 1.9e-19 70.0 0.0 2.5e-19 69.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|336254884|ref|YP_004597991.1| - 1.2e-12 47.9 0.0 2e-12 47.2 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|336254884|ref|YP_004597991.1| - 6.2e-12 45.8 0.0 9.1e-12 45.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|336254884|ref|YP_004597991.1| - 4.2e-08 34.0 0.0 5e-08 33.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|336254884|ref|YP_004597991.1| - 5.5e-06 26.3 0.0 8.3e-06 25.7 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|336254884|ref|YP_004597991.1| - 0.00017 21.7 0.0 0.00042 20.4 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|336254884|ref|YP_004597991.1| - 0.00031 20.9 0.0 0.00042 20.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_13 PF13880.6 gi|336254884|ref|YP_004597991.1| - 0.1 12.6 0.0 0.43 10.6 0.0 1.9 1 1 1 2 2 2 0 ESCO1/2 acetyl-transferase Usp PF00582.26 gi|336254885|ref|YP_004597992.1| - 1.5e-11 45.0 2.9 4e-11 43.6 2.9 1.7 1 1 0 1 1 1 1 Universal stress protein family Usp PF00582.26 gi|336254886|ref|YP_004597993.1| - 3.7e-35 121.5 6.6 4.6e-35 121.2 6.6 1.1 1 0 0 1 1 1 1 Universal stress protein family DrsE PF02635.15 gi|336254887|ref|YP_004597994.1| - 0.0075 16.6 0.0 0.017 15.5 0.0 1.6 1 0 0 1 1 1 1 DsrE/DsrF-like family DHH PF01368.20 gi|336254887|ref|YP_004597994.1| - 0.0096 16.1 0.9 0.019 15.2 0.9 1.5 1 0 0 1 1 1 1 DHH family Glyco_hydro_57 PF03065.15 gi|336254887|ref|YP_004597994.1| - 0.014 14.6 0.0 0.02 14.1 0.0 1.2 1 0 0 1 1 1 0 Glycosyl hydrolase family 57 PGM_PMM_II PF02879.16 gi|336254887|ref|YP_004597994.1| - 0.015 15.9 0.6 0.083 13.5 0.1 2.5 3 0 0 3 3 3 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DHHA1 PF02272.19 gi|336254887|ref|YP_004597994.1| - 0.021 15.2 0.3 0.077 13.4 0.1 2.2 2 1 0 2 2 2 0 DHHA1 domain PrpR_N PF06506.11 gi|336254887|ref|YP_004597994.1| - 0.058 13.0 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 Propionate catabolism activator CoA_binding_2 PF13380.6 gi|336254887|ref|YP_004597994.1| - 0.42 11.1 2.1 0.93 10.0 0.5 2.6 2 1 0 2 2 2 0 CoA binding domain TFIIB PF00382.19 gi|336254888|ref|YP_004597995.1| - 4.6e-43 145.1 2.2 8.6e-23 80.2 0.3 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|336254888|ref|YP_004597995.1| - 4e-16 58.2 2.7 7.1e-16 57.4 2.7 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding A2L_zn_ribbon PF08792.10 gi|336254888|ref|YP_004597995.1| - 0.003 17.2 0.7 0.0083 15.8 0.7 1.8 1 1 0 1 1 1 1 A2L zinc ribbon domain Cyclin_N PF00134.23 gi|336254888|ref|YP_004597995.1| - 0.0064 16.2 0.0 0.016 14.9 0.0 1.7 1 0 0 1 1 1 1 Cyclin, N-terminal domain PhnA_Zn_Ribbon PF08274.12 gi|336254888|ref|YP_004597995.1| - 0.02 14.8 2.9 0.041 13.9 2.9 1.5 1 0 0 1 1 1 0 PhnA Zinc-Ribbon Zn_Tnp_IS1595 PF12760.7 gi|336254888|ref|YP_004597995.1| - 0.027 14.4 0.1 0.064 13.2 0.1 1.5 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Sigma70_r4 PF04545.16 gi|336254888|ref|YP_004597995.1| - 0.036 13.6 2.2 0.22 11.1 0.1 3.1 3 1 0 3 3 3 0 Sigma-70, region 4 Ribosomal_S27e PF01667.17 gi|336254888|ref|YP_004597995.1| - 0.059 13.1 0.4 0.12 12.1 0.4 1.4 1 0 0 1 1 1 0 Ribosomal protein S27 DUF2318 PF10080.9 gi|336254888|ref|YP_004597995.1| - 0.1 12.7 0.3 0.23 11.6 0.3 1.5 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) Zn-ribbon_8 PF09723.10 gi|336254888|ref|YP_004597995.1| - 0.15 12.2 3.0 1.9 8.7 0.6 2.5 1 1 0 2 2 2 0 Zinc ribbon domain eIF-6 PF01912.18 gi|336254888|ref|YP_004597995.1| - 0.15 11.4 0.1 0.27 10.6 0.1 1.3 1 0 0 1 1 1 0 eIF-6 family zf-ribbon_3 PF13248.6 gi|336254888|ref|YP_004597995.1| - 0.31 10.5 1.5 1 8.8 1.5 1.9 1 1 0 1 1 1 0 zinc-ribbon domain zf-NADH-PPase PF09297.11 gi|336254888|ref|YP_004597995.1| - 4.9 6.9 9.5 1.8 8.3 0.0 3.1 2 1 1 3 3 3 0 NADH pyrophosphatase zinc ribbon domain DUF202 PF02656.15 gi|336254889|ref|YP_004597996.1| - 0.0027 18.1 5.0 0.0027 18.1 5.0 4.2 2 2 1 3 3 3 1 Domain of unknown function (DUF202) Herpes_LMP1 PF05297.11 gi|336254889|ref|YP_004597996.1| - 1.4 8.1 5.6 0.45 9.7 2.5 1.8 2 0 0 2 2 2 0 Herpesvirus latent membrane protein 1 (LMP1) DPM3 PF08285.11 gi|336254889|ref|YP_004597996.1| - 2.4 8.4 4.9 91 3.4 2.2 3.3 2 1 0 2 2 2 0 Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) MCPsignal PF00015.21 gi|336254891|ref|YP_004597998.1| - 9.9e-47 158.9 49.7 4.1e-44 150.4 25.2 4.0 1 1 3 4 4 4 3 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF948 PF06103.11 gi|336254891|ref|YP_004597998.1| - 1.5e-05 25.1 33.1 0.045 14.0 3.5 4.8 2 2 2 4 4 4 3 Bacterial protein of unknown function (DUF948) Laminin_II PF06009.12 gi|336254891|ref|YP_004597998.1| - 0.00015 21.8 36.6 0.0055 16.7 6.6 5.1 2 2 3 5 5 5 3 Laminin Domain II DUF812 PF05667.11 gi|336254891|ref|YP_004597998.1| - 0.0013 17.7 35.1 0.0069 15.3 7.4 3.4 3 1 1 4 4 4 3 Protein of unknown function (DUF812) DUF1664 PF07889.12 gi|336254891|ref|YP_004597998.1| - 0.0031 17.5 31.8 0.017 15.1 1.6 5.1 3 2 3 6 6 5 2 Protein of unknown function (DUF1664) CorA PF01544.18 gi|336254891|ref|YP_004597998.1| - 0.0081 15.5 25.2 0.052 12.9 4.3 3.4 2 1 1 3 3 3 3 CorA-like Mg2+ transporter protein Mod_r PF07200.13 gi|336254891|ref|YP_004597998.1| - 0.024 14.7 0.8 0.024 14.7 0.8 3.6 2 2 1 3 3 3 0 Modifier of rudimentary (Mod(r)) protein Fib_alpha PF08702.10 gi|336254891|ref|YP_004597998.1| - 0.03 14.5 19.7 0.24 11.6 0.5 4.3 2 2 2 4 4 4 0 Fibrinogen alpha/beta chain family DASH_Dad2 PF08654.10 gi|336254891|ref|YP_004597998.1| - 0.046 14.1 21.5 0.11 13.0 3.5 4.4 1 1 2 3 3 3 0 DASH complex subunit Dad2 ING PF12998.7 gi|336254891|ref|YP_004597998.1| - 0.22 12.1 9.1 0.73 10.5 0.5 3.6 1 1 3 4 4 4 0 Inhibitor of growth proteins N-terminal histone-binding DUF3450 PF11932.8 gi|336254891|ref|YP_004597998.1| - 0.3 10.3 39.3 0.37 10.0 10.1 3.7 1 1 2 3 3 3 0 Protein of unknown function (DUF3450) BLOC1_2 PF10046.9 gi|336254891|ref|YP_004597998.1| - 0.5 10.7 33.5 0.4 11.0 0.7 5.1 2 2 2 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Sec34 PF04136.15 gi|336254891|ref|YP_004597998.1| - 0.6 10.0 16.7 8.1 6.3 3.2 4.7 2 2 3 5 5 5 0 Sec34-like family Syntaxin-6_N PF09177.11 gi|336254891|ref|YP_004597998.1| - 0.71 10.5 31.8 3.3 8.3 2.8 5.1 2 2 2 5 5 5 0 Syntaxin 6, N-terminal DASH_Duo1 PF08651.10 gi|336254891|ref|YP_004597998.1| - 0.79 9.5 10.2 8.5 6.2 0.1 4.4 5 0 0 5 5 3 0 DASH complex subunit Duo1 ATG16 PF08614.11 gi|336254891|ref|YP_004597998.1| - 0.95 9.6 41.6 0.31 11.2 11.3 4.1 2 1 2 4 4 4 0 Autophagy protein 16 (ATG16) Spc7 PF08317.11 gi|336254891|ref|YP_004597998.1| - 0.95 8.3 39.9 2.2 7.1 15.9 3.5 2 1 1 4 4 4 0 Spc7 kinetochore protein Syntaxin_2 PF14523.6 gi|336254891|ref|YP_004597998.1| - 0.99 9.8 8.4 21 5.6 0.3 4.3 1 1 2 3 3 3 0 Syntaxin-like protein MscS_porin PF12795.7 gi|336254891|ref|YP_004597998.1| - 1.4 8.4 36.1 0.033 13.7 18.2 3.5 1 1 2 3 3 3 0 Mechanosensitive ion channel porin domain HOOK PF05622.12 gi|336254891|ref|YP_004597998.1| - 1.4 6.9 30.3 0.52 8.4 9.5 2.7 1 1 1 2 2 2 0 HOOK protein FlaC_arch PF05377.11 gi|336254891|ref|YP_004597998.1| - 1.5 9.3 29.7 0.66 10.4 1.5 6.3 3 2 1 5 5 5 0 Flagella accessory protein C (FlaC) GAS PF13851.6 gi|336254891|ref|YP_004597998.1| - 1.6 8.0 20.6 1 8.7 10.4 3.2 1 1 2 3 3 3 0 Growth-arrest specific micro-tubule binding Dynactin_p22 PF07426.11 gi|336254891|ref|YP_004597998.1| - 2.4 8.0 12.5 2.9 7.7 7.7 2.5 2 1 0 2 2 2 0 Dynactin subunit p22 Prominin PF05478.11 gi|336254891|ref|YP_004597998.1| - 2.4 6.0 13.3 0.79 7.6 9.0 2.0 1 1 1 2 2 2 0 Prominin DUF745 PF05335.13 gi|336254891|ref|YP_004597998.1| - 2.6 7.8 38.1 0.31 10.7 3.8 4.5 1 1 2 4 4 4 0 Protein of unknown function (DUF745) DUF3037 PF11236.8 gi|336254891|ref|YP_004597998.1| - 2.6 8.5 14.0 0.99 9.8 0.7 4.0 1 1 2 4 4 4 0 Protein of unknown function (DUF3037) TMPIT PF07851.13 gi|336254891|ref|YP_004597998.1| - 3.1 7.0 17.4 0.46 9.7 1.2 3.2 2 1 1 3 3 3 0 TMPIT-like protein RecG_N PF17190.4 gi|336254891|ref|YP_004597998.1| - 3.2 8.6 8.6 56 4.5 0.1 4.8 3 2 1 5 5 5 0 RecG N-terminal helical domain Goodbye PF17109.5 gi|336254891|ref|YP_004597998.1| - 3.6 8.1 14.0 17 5.9 0.5 4.2 2 2 3 5 5 5 0 fungal STAND N-terminal Goodbye domain Lebercilin PF15619.6 gi|336254891|ref|YP_004597998.1| - 4.3 6.9 21.4 0.35 10.5 11.0 2.6 2 1 0 2 2 2 0 Ciliary protein causing Leber congenital amaurosis disease FH2 PF02181.23 gi|336254891|ref|YP_004597998.1| - 5.5 6.0 19.2 0.38 9.8 3.5 3.6 1 1 3 4 4 4 0 Formin Homology 2 Domain Spectrin PF00435.21 gi|336254891|ref|YP_004597998.1| - 5.5 7.5 24.2 0.96 10.0 2.7 4.5 1 1 2 4 4 4 0 Spectrin repeat LXG PF04740.12 gi|336254891|ref|YP_004597998.1| - 6.1 6.5 29.9 4.5 6.9 5.1 4.3 2 2 1 3 3 3 0 LXG domain of WXG superfamily AAA_13 PF13166.6 gi|336254891|ref|YP_004597998.1| - 6.9 5.2 32.5 1.4 7.5 16.6 2.4 1 1 1 2 2 2 0 AAA domain IFT57 PF10498.9 gi|336254891|ref|YP_004597998.1| - 7.8 5.3 26.4 2 7.3 4.8 2.6 1 1 1 2 2 2 0 Intra-flagellar transport protein 57 TPR_MLP1_2 PF07926.12 gi|336254891|ref|YP_004597998.1| - 9.1 6.4 42.1 2.3 8.3 9.5 3.8 2 1 1 3 3 3 0 TPR/MLP1/MLP2-like protein DUF677 PF05055.12 gi|336254891|ref|YP_004597998.1| - 9.2 5.0 26.1 0.034 13.0 6.5 3.0 2 1 1 3 3 3 0 Protein of unknown function (DUF677) DUF4200 PF13863.6 gi|336254891|ref|YP_004597998.1| - 9.5 6.6 25.1 0.19 12.2 7.2 4.1 2 2 2 4 4 4 0 Domain of unknown function (DUF4200) CheW PF01584.19 gi|336254892|ref|YP_004597999.1| - 1.8e-25 89.2 0.1 2.1e-25 89.0 0.1 1.0 1 0 0 1 1 1 1 CheW-like domain MCPsignal PF00015.21 gi|336254893|ref|YP_004598000.1| - 7.2e-40 136.6 19.6 7.2e-40 136.6 19.6 3.7 1 1 1 3 3 3 1 Methyl-accepting chemotaxis protein (MCP) signalling domain PAS PF00989.25 gi|336254893|ref|YP_004598000.1| - 1.2e-12 47.9 0.0 3.7e-12 46.2 0.0 1.9 1 0 0 1 1 1 1 PAS fold PAS_4 PF08448.10 gi|336254893|ref|YP_004598000.1| - 6.6e-12 45.6 1.8 1.4e-10 41.4 1.8 3.1 1 1 0 1 1 1 1 PAS fold PAS_9 PF13426.7 gi|336254893|ref|YP_004598000.1| - 2.1e-08 34.3 0.1 1.6e-07 31.6 0.0 2.5 3 0 0 3 3 2 1 PAS domain PAS_8 PF13188.7 gi|336254893|ref|YP_004598000.1| - 2.7e-06 27.3 0.1 3e-05 23.9 0.0 2.5 2 0 0 2 2 2 1 PAS domain DUF948 PF06103.11 gi|336254893|ref|YP_004598000.1| - 1.4e-05 25.2 36.2 9.2e-05 22.6 4.7 5.0 2 2 2 4 4 4 1 Bacterial protein of unknown function (DUF948) EzrA PF06160.12 gi|336254893|ref|YP_004598000.1| - 7.3e-05 21.1 18.1 0.0008 17.7 10.6 2.3 2 0 0 2 2 2 2 Septation ring formation regulator, EzrA Mod_r PF07200.13 gi|336254893|ref|YP_004598000.1| - 0.00044 20.4 13.7 0.23 11.5 0.0 3.3 2 2 1 3 3 3 1 Modifier of rudimentary (Mod(r)) protein DUF3450 PF11932.8 gi|336254893|ref|YP_004598000.1| - 0.00048 19.5 22.0 0.0016 17.8 10.0 3.4 1 1 1 3 3 3 2 Protein of unknown function (DUF3450) DUF745 PF05335.13 gi|336254893|ref|YP_004598000.1| - 0.0016 18.2 30.9 0.25 11.0 4.5 3.3 1 1 1 3 3 3 3 Protein of unknown function (DUF745) YkyA PF10368.9 gi|336254893|ref|YP_004598000.1| - 0.0026 17.4 25.5 0.008 15.9 9.8 3.7 1 1 1 3 3 3 2 Putative cell-wall binding lipoprotein DUF1664 PF07889.12 gi|336254893|ref|YP_004598000.1| - 0.0027 17.8 25.4 0.22 11.6 4.9 4.3 2 2 2 4 4 4 2 Protein of unknown function (DUF1664) PilJ PF13675.6 gi|336254893|ref|YP_004598000.1| - 0.0053 16.8 18.4 3.7 7.6 2.0 5.3 3 2 2 5 5 5 0 Type IV pili methyl-accepting chemotaxis transducer N-term MLTR_LBD PF17765.1 gi|336254893|ref|YP_004598000.1| - 0.0086 16.2 0.0 0.0086 16.2 0.0 3.6 4 1 0 4 4 3 1 MmyB-like transcription regulator ligand binding domain Baculo_PEP_C PF04513.12 gi|336254893|ref|YP_004598000.1| - 0.01 15.9 18.9 0.044 13.8 5.5 3.5 2 1 1 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus Spc7 PF08317.11 gi|336254893|ref|YP_004598000.1| - 0.013 14.4 29.5 0.13 11.1 16.1 3.1 1 1 2 3 3 3 0 Spc7 kinetochore protein Laminin_II PF06009.12 gi|336254893|ref|YP_004598000.1| - 0.014 15.4 30.9 0.021 14.8 4.3 4.7 2 2 1 4 4 4 0 Laminin Domain II HAMP PF00672.25 gi|336254893|ref|YP_004598000.1| - 0.016 15.6 1.1 0.016 15.6 1.1 4.8 4 2 0 4 4 3 0 HAMP domain SesA PF17107.5 gi|336254893|ref|YP_004598000.1| - 0.017 15.3 4.8 0.017 15.3 4.8 3.7 1 1 3 4 4 4 0 N-terminal domain on NACHT_NTPase and P-loop NTPases DUF4047 PF13256.6 gi|336254893|ref|YP_004598000.1| - 0.021 15.0 2.9 0.049 13.8 2.4 1.9 2 0 0 2 2 1 0 Domain of unknown function (DUF4047) Seryl_tRNA_N PF02403.22 gi|336254893|ref|YP_004598000.1| - 0.024 14.8 19.9 0.082 13.1 0.6 4.4 2 2 1 4 4 4 0 Seryl-tRNA synthetase N-terminal domain DUF2009 PF09418.10 gi|336254893|ref|YP_004598000.1| - 0.031 13.4 2.6 0.045 12.8 2.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2009) RecG_N PF17190.4 gi|336254893|ref|YP_004598000.1| - 0.062 14.0 3.1 73 4.2 0.0 4.7 3 2 3 6 6 6 0 RecG N-terminal helical domain ATG16 PF08614.11 gi|336254893|ref|YP_004598000.1| - 0.069 13.4 20.5 0.058 13.6 11.8 2.6 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) IFT57 PF10498.9 gi|336254893|ref|YP_004598000.1| - 0.075 12.0 15.6 0.43 9.5 13.2 2.4 1 1 3 4 4 4 0 Intra-flagellar transport protein 57 DUF489 PF04356.12 gi|336254893|ref|YP_004598000.1| - 0.093 12.7 6.2 0.042 13.9 3.5 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF489) RmuC PF02646.16 gi|336254893|ref|YP_004598000.1| - 0.11 11.6 14.6 0.9 8.6 2.3 4.3 1 1 3 5 5 5 0 RmuC family CdvA PF18822.1 gi|336254893|ref|YP_004598000.1| - 0.12 12.2 17.8 2.2 8.1 0.4 4.6 1 1 3 4 4 4 0 CdvA-like coiled-coil domain Fib_alpha PF08702.10 gi|336254893|ref|YP_004598000.1| - 0.14 12.3 16.0 0.23 11.7 6.5 4.0 2 2 3 5 5 5 0 Fibrinogen alpha/beta chain family DUF677 PF05055.12 gi|336254893|ref|YP_004598000.1| - 0.16 10.8 18.5 0.17 10.7 3.4 2.9 2 1 1 3 3 3 0 Protein of unknown function (DUF677) TMPIT PF07851.13 gi|336254893|ref|YP_004598000.1| - 0.2 10.9 11.8 1.1 8.4 5.6 3.1 2 1 1 3 3 3 0 TMPIT-like protein Syntaxin-6_N PF09177.11 gi|336254893|ref|YP_004598000.1| - 0.21 12.2 25.1 0.29 11.7 0.2 4.5 2 2 1 3 3 3 0 Syntaxin 6, N-terminal COG2 PF06148.11 gi|336254893|ref|YP_004598000.1| - 0.26 11.4 20.6 0.32 11.1 0.6 4.6 2 2 3 5 5 5 0 COG (conserved oligomeric Golgi) complex component, COG2 Gp-FAR-1 PF05823.12 gi|336254893|ref|YP_004598000.1| - 0.27 11.6 2.5 1.9 8.9 0.7 2.7 1 1 0 2 2 2 0 Nematode fatty acid retinoid binding protein (Gp-FAR-1) ApoLp-III PF07464.11 gi|336254893|ref|YP_004598000.1| - 0.28 11.3 25.6 0.44 10.6 2.1 4.1 1 1 3 4 4 4 0 Apolipophorin-III precursor (apoLp-III) WXG100 PF06013.12 gi|336254893|ref|YP_004598000.1| - 0.3 11.3 27.4 0.39 11.0 3.5 6.7 1 1 5 7 7 7 0 Proteins of 100 residues with WXG AAA_13 PF13166.6 gi|336254893|ref|YP_004598000.1| - 0.37 9.4 22.6 1.2 7.7 17.6 2.2 1 1 1 2 2 2 0 AAA domain T7SS_ESX_EspC PF10824.8 gi|336254893|ref|YP_004598000.1| - 0.52 10.8 39.7 0.1 13.1 0.7 6.0 4 2 1 6 6 5 0 Excreted virulence factor EspC, type VII ESX diderm MCC-bdg_PDZ PF10506.9 gi|336254893|ref|YP_004598000.1| - 0.6 10.2 4.1 1.6 8.8 0.1 3.3 2 1 1 3 3 3 0 PDZ domain of MCC-2 bdg protein for Usher syndrome Ferritin PF00210.24 gi|336254893|ref|YP_004598000.1| - 0.62 10.0 18.9 0.25 11.3 4.8 3.7 1 1 2 3 3 3 0 Ferritin-like domain P4Ha_N PF08336.11 gi|336254893|ref|YP_004598000.1| - 0.86 9.6 10.0 41 4.2 0.0 3.6 2 2 1 3 3 3 0 Prolyl 4-Hydroxylase alpha-subunit, N-terminal region Mobilization_B PF17511.2 gi|336254893|ref|YP_004598000.1| - 0.9 9.9 26.1 0.093 13.1 2.9 4.5 3 1 2 5 5 4 0 Mobilization protein B APG17 PF04108.12 gi|336254893|ref|YP_004598000.1| - 1 8.4 25.6 0.098 11.8 4.7 3.3 1 1 2 3 3 2 0 Autophagy protein Apg17 BLOC1_2 PF10046.9 gi|336254893|ref|YP_004598000.1| - 1.2 9.5 22.4 2.3 8.6 4.9 4.5 3 1 1 4 4 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 T3SSipB PF16535.5 gi|336254893|ref|YP_004598000.1| - 1.6 9.2 32.1 5.6 7.4 9.3 3.7 1 1 1 3 3 3 0 Type III cell invasion protein SipB DUF16 PF01519.16 gi|336254893|ref|YP_004598000.1| - 1.7 9.2 20.6 2 8.9 0.9 4.5 1 1 3 4 4 4 0 Protein of unknown function DUF16 Prominin PF05478.11 gi|336254893|ref|YP_004598000.1| - 1.7 6.5 9.3 4.4 5.1 8.2 2.0 1 1 0 1 1 1 0 Prominin Goodbye PF17109.5 gi|336254893|ref|YP_004598000.1| - 1.8 9.1 10.2 1 9.8 1.2 3.5 2 2 1 3 3 3 0 fungal STAND N-terminal Goodbye domain DUF4795 PF16043.5 gi|336254893|ref|YP_004598000.1| - 1.9 8.0 22.1 1.7 8.2 12.2 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4795) TMP_2 PF06791.13 gi|336254893|ref|YP_004598000.1| - 2.1 8.0 21.0 2.2 7.9 8.0 3.2 1 1 0 2 2 2 0 Prophage tail length tape measure protein TPR_MLP1_2 PF07926.12 gi|336254893|ref|YP_004598000.1| - 2.4 8.2 31.1 1.6 8.8 4.9 3.3 1 1 2 3 3 3 0 TPR/MLP1/MLP2-like protein COG5 PF10392.9 gi|336254893|ref|YP_004598000.1| - 2.5 8.3 6.7 6 7.1 1.5 3.3 2 2 2 4 4 4 0 Golgi transport complex subunit 5 Nmad5 PF18757.1 gi|336254893|ref|YP_004598000.1| - 2.9 8.0 11.8 0.31 11.2 4.6 2.8 1 1 1 3 3 3 0 Nucleotide modification associated domain 5 DinB PF05163.12 gi|336254893|ref|YP_004598000.1| - 3.6 7.5 9.8 4.4 7.2 0.2 2.7 2 1 0 2 2 2 0 DinB family FUSC PF04632.12 gi|336254893|ref|YP_004598000.1| - 3.9 5.9 21.3 1.9 6.9 5.2 2.2 1 1 0 2 2 2 0 Fusaric acid resistance protein family UPF0242 PF06785.11 gi|336254893|ref|YP_004598000.1| - 4.2 7.4 17.2 6.4 6.8 11.3 2.7 1 1 2 3 3 3 0 Uncharacterised protein family (UPF0242) N-terminus DUF4200 PF13863.6 gi|336254893|ref|YP_004598000.1| - 4.2 7.8 13.3 1.5 9.2 7.3 3.0 2 2 1 3 3 3 0 Domain of unknown function (DUF4200) HMMR_N PF15905.5 gi|336254893|ref|YP_004598000.1| - 4.5 6.7 19.2 1.2 8.5 12.0 2.6 1 1 0 2 2 2 0 Hyaluronan mediated motility receptor N-terminal Atg14 PF10186.9 gi|336254893|ref|YP_004598000.1| - 5.1 6.1 7.5 19 4.2 7.5 1.9 1 1 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 Syntaxin_2 PF14523.6 gi|336254893|ref|YP_004598000.1| - 5.2 7.5 15.7 7 7.1 2.2 4.5 2 2 2 5 5 5 0 Syntaxin-like protein DUF2203 PF09969.9 gi|336254893|ref|YP_004598000.1| - 7.5 7.3 26.7 9.9 6.9 2.2 4.5 2 2 2 4 4 4 0 Uncharacterized conserved protein (DUF2203) DUF4665 PF15679.5 gi|336254893|ref|YP_004598000.1| - 7.6 7.2 5.9 7.6 7.2 1.8 2.9 3 1 1 4 4 3 0 Domain of unknown function (DUF4665) CorA PF01544.18 gi|336254893|ref|YP_004598000.1| - 8.7 5.6 24.1 1.7 7.9 1.2 3.7 1 1 2 3 3 3 0 CorA-like Mg2+ transporter protein CREPT PF16566.5 gi|336254893|ref|YP_004598000.1| - 9.7 6.4 11.8 3.1 8.0 3.7 3.2 1 1 2 3 3 3 0 Cell-cycle alteration and expression-elevated protein in tumour CheW PF01584.19 gi|336254894|ref|YP_004598001.1| - 3.1e-23 82.0 0.2 4.7e-23 81.4 0.2 1.3 1 0 0 1 1 1 1 CheW-like domain AAA_31 PF13614.6 gi|336254895|ref|YP_004598002.1| - 3.4e-39 134.6 0.0 4.9e-39 134.1 0.0 1.1 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|336254895|ref|YP_004598002.1| - 1.3e-21 77.0 0.0 7.6e-16 58.3 0.0 2.2 2 0 0 2 2 2 2 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|336254895|ref|YP_004598002.1| - 7.8e-10 38.6 0.1 1.7e-09 37.5 0.1 1.8 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase MipZ PF09140.11 gi|336254895|ref|YP_004598002.1| - 3.6e-09 36.3 0.5 1.4e-05 24.5 0.1 2.3 2 0 0 2 2 2 2 ATPase MipZ CBP_BcsQ PF06564.12 gi|336254895|ref|YP_004598002.1| - 4.4e-07 29.6 0.1 1.3e-06 28.1 0.0 1.7 2 1 0 2 2 2 1 Cellulose biosynthesis protein BcsQ ArsA_ATPase PF02374.15 gi|336254895|ref|YP_004598002.1| - 4.6e-07 29.3 0.1 1.5e-06 27.7 0.1 1.8 1 1 0 1 1 1 1 Anion-transporting ATPase Fer4_NifH PF00142.18 gi|336254895|ref|YP_004598002.1| - 1.4e-05 24.7 0.0 9.6e-05 22.0 0.0 2.0 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ATP_bind_1 PF03029.17 gi|336254895|ref|YP_004598002.1| - 8.1e-05 22.5 0.2 0.083 12.7 0.0 2.3 2 1 0 2 2 2 2 Conserved hypothetical ATP binding protein CLP1_P PF16575.5 gi|336254895|ref|YP_004598002.1| - 0.0014 18.4 0.0 0.0033 17.2 0.0 1.5 2 0 0 2 2 2 1 mRNA cleavage and polyadenylation factor CLP1 P-loop YcaO PF02624.16 gi|336254895|ref|YP_004598002.1| - 0.0026 17.1 0.1 0.037 13.3 0.0 2.2 1 1 1 2 2 2 1 YcaO cyclodehydratase, ATP-ad Mg2+-binding Thymidylate_kin PF02223.17 gi|336254895|ref|YP_004598002.1| - 0.033 13.9 0.2 2 8.1 0.0 2.2 2 0 0 2 2 2 0 Thymidylate kinase AAA_24 PF13479.6 gi|336254895|ref|YP_004598002.1| - 0.05 13.3 0.0 1.1 9.0 0.0 2.4 1 1 1 2 2 2 0 AAA domain VirC1 PF07015.11 gi|336254895|ref|YP_004598002.1| - 0.053 12.8 0.1 0.19 11.0 0.0 1.8 2 0 0 2 2 2 0 VirC1 protein AAA_25 PF13481.6 gi|336254895|ref|YP_004598002.1| - 0.063 12.8 0.4 0.73 9.4 0.4 2.3 1 1 0 1 1 1 0 AAA domain LpxK PF02606.14 gi|336254895|ref|YP_004598002.1| - 0.12 11.5 0.1 0.44 9.6 0.1 1.8 2 0 0 2 2 2 0 Tetraacyldisaccharide-1-P 4'-kinase SRP54 PF00448.22 gi|336254895|ref|YP_004598002.1| - 0.13 11.9 0.1 0.49 10.0 0.0 1.8 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain MeaB PF03308.16 gi|336254895|ref|YP_004598002.1| - 0.14 11.1 0.1 0.25 10.3 0.1 1.4 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB CheB_methylest PF01339.17 gi|336254897|ref|YP_004598004.1| - 2.7e-52 176.9 0.4 4.9e-52 176.1 0.4 1.4 1 0 0 1 1 1 1 CheB methylesterase Response_reg PF00072.24 gi|336254897|ref|YP_004598004.1| - 8.3e-23 80.7 0.2 2e-22 79.4 0.2 1.7 1 0 0 1 1 1 1 Response regulator receiver domain DUF2023 PF09633.10 gi|336254897|ref|YP_004598004.1| - 0.021 14.9 0.0 1.3 9.2 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2023) CheW PF01584.19 gi|336254898|ref|YP_004598005.1| - 1.1e-19 70.5 0.7 2.8e-19 69.1 0.7 1.8 1 0 0 1 1 1 1 CheW-like domain HATPase_c PF02518.26 gi|336254898|ref|YP_004598005.1| - 4.7e-19 69.0 0.3 4.7e-19 69.0 0.3 2.5 3 0 0 3 3 3 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Hpt PF01627.23 gi|336254898|ref|YP_004598005.1| - 2e-18 66.4 1.0 2.6e-17 62.8 0.0 2.7 2 0 0 2 2 2 1 Hpt domain H-kinase_dim PF02895.14 gi|336254898|ref|YP_004598005.1| - 9.2e-08 32.4 3.4 2.7e-07 30.9 3.4 1.9 1 0 0 1 1 1 1 Signal transducing histidine kinase, homodimeric domain HATPase_c_3 PF13589.6 gi|336254898|ref|YP_004598005.1| - 0.0024 17.7 0.4 0.0069 16.2 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase P2 PF07194.11 gi|336254898|ref|YP_004598005.1| - 0.003 17.6 0.1 0.024 14.7 0.0 2.7 2 0 0 2 2 2 1 P2 response regulator binding domain HATPase_c_2 PF13581.6 gi|336254898|ref|YP_004598005.1| - 0.06 13.3 2.2 0.15 12.0 0.1 2.8 2 1 0 2 2 2 0 Histidine kinase-like ATPase domain DUF4530 PF15039.6 gi|336254898|ref|YP_004598005.1| - 7.7 6.7 6.4 0.75 10.0 0.8 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4530) Sigma70_ner PF04546.13 gi|336254898|ref|YP_004598005.1| - 9.6 6.0 21.2 0.1 12.4 2.2 3.1 3 0 0 3 3 3 0 Sigma-70, non-essential region Response_reg PF00072.24 gi|336254899|ref|YP_004598006.1| - 3.4e-29 101.3 1.2 3.8e-29 101.1 1.2 1.0 1 0 0 1 1 1 1 Response regulator receiver domain CheC PF04509.12 gi|336254900|ref|YP_004598007.1| - 9.1e-21 73.5 0.4 2.4e-09 36.9 0.0 3.5 3 0 0 3 3 3 2 CheC-like family CheX PF13690.6 gi|336254900|ref|YP_004598007.1| - 3.3e-15 56.0 0.1 1.1e-06 28.7 0.0 2.4 2 0 0 2 2 2 2 Chemotaxis phosphatase CheX CheF-arch PF04283.12 gi|336254901|ref|YP_004598008.1| - 1e-67 228.1 1.9 2.5e-67 226.8 0.9 1.9 2 1 1 3 3 3 1 Chemotaxis signal transduction system protein F from archaea HTH_45 PF14947.6 gi|336254901|ref|YP_004598008.1| - 0.054 13.5 0.0 0.11 12.5 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix T2SSE PF00437.20 gi|336254902|ref|YP_004598009.1| - 1.7e-42 145.4 0.0 2.5e-42 144.8 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_16 PF13191.6 gi|336254902|ref|YP_004598009.1| - 2.8e-05 24.6 0.1 0.0011 19.3 0.0 2.3 2 0 0 2 2 2 1 AAA ATPase domain AAA_15 PF13175.6 gi|336254902|ref|YP_004598009.1| - 0.00081 19.2 0.1 0.59 9.8 0.0 2.2 2 0 0 2 2 2 2 AAA ATPase domain ABC_tran PF00005.27 gi|336254902|ref|YP_004598009.1| - 0.0056 17.2 0.0 0.041 14.4 0.0 2.3 2 1 0 2 2 2 1 ABC transporter AAA_7 PF12775.7 gi|336254902|ref|YP_004598009.1| - 0.0094 15.5 0.0 0.016 14.7 0.0 1.3 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_29 PF13555.6 gi|336254902|ref|YP_004598009.1| - 0.016 15.0 0.0 0.033 13.9 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Dynamin_N PF00350.23 gi|336254902|ref|YP_004598009.1| - 0.032 14.3 0.0 0.077 13.1 0.0 1.6 1 0 0 1 1 1 0 Dynamin family AAA_22 PF13401.6 gi|336254902|ref|YP_004598009.1| - 0.068 13.4 0.0 0.19 12.0 0.0 1.7 1 0 0 1 1 1 0 AAA domain AIG1 PF04548.16 gi|336254902|ref|YP_004598009.1| - 0.085 12.2 0.0 0.24 10.7 0.0 1.8 1 0 0 1 1 1 0 AIG1 family Microtub_bd PF16796.5 gi|336254902|ref|YP_004598009.1| - 0.14 12.1 0.0 0.39 10.6 0.0 1.7 1 1 0 1 1 1 0 Microtubule binding AAA_23 PF13476.6 gi|336254902|ref|YP_004598009.1| - 0.51 10.8 2.1 3.3 8.1 0.0 2.3 2 0 0 2 2 2 0 AAA domain ATPase PF06745.13 gi|336254903|ref|YP_004598010.1| - 1.9e-15 56.8 0.2 2.9e-15 56.2 0.2 1.2 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|336254903|ref|YP_004598010.1| - 8e-05 22.3 0.1 0.00021 20.9 0.1 1.7 1 1 0 1 1 1 1 AAA domain Rad51 PF08423.11 gi|336254903|ref|YP_004598010.1| - 0.00018 20.9 0.8 0.0012 18.2 0.8 2.0 1 1 0 1 1 1 1 Rad51 TsaE PF02367.17 gi|336254903|ref|YP_004598010.1| - 0.0008 19.4 0.1 0.0071 16.3 0.0 2.1 1 1 0 2 2 2 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE NACHT PF05729.12 gi|336254903|ref|YP_004598010.1| - 0.0014 18.6 0.2 0.0097 15.8 0.2 2.1 1 1 0 1 1 1 1 NACHT domain PAXNEB PF05625.11 gi|336254903|ref|YP_004598010.1| - 0.0064 15.7 0.0 1.9 7.6 0.0 2.1 2 0 0 2 2 2 2 PAXNEB protein TIP49 PF06068.13 gi|336254903|ref|YP_004598010.1| - 0.011 14.9 0.0 2 7.5 0.0 2.2 2 0 0 2 2 2 0 TIP49 P-loop domain AAA_22 PF13401.6 gi|336254903|ref|YP_004598010.1| - 0.016 15.5 0.1 0.032 14.5 0.1 1.5 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|336254903|ref|YP_004598010.1| - 0.043 13.4 0.1 0.49 10.0 0.1 2.2 1 1 0 1 1 1 0 SRP54-type protein, GTPase domain IstB_IS21 PF01695.17 gi|336254903|ref|YP_004598010.1| - 0.049 13.4 0.1 0.13 12.0 0.0 1.5 1 1 0 1 1 1 0 IstB-like ATP binding protein AAA_16 PF13191.6 gi|336254903|ref|YP_004598010.1| - 0.061 13.7 0.1 0.12 12.8 0.1 1.5 1 1 0 1 1 1 0 AAA ATPase domain APS_kinase PF01583.20 gi|336254903|ref|YP_004598010.1| - 0.069 13.1 0.2 0.23 11.3 0.0 1.9 2 0 0 2 2 2 0 Adenylylsulphate kinase AAA PF00004.29 gi|336254903|ref|YP_004598010.1| - 0.074 13.5 0.3 0.19 12.1 0.3 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) MipZ PF09140.11 gi|336254903|ref|YP_004598010.1| - 0.094 12.0 0.0 0.16 11.2 0.0 1.4 1 0 0 1 1 1 0 ATPase MipZ ArsA_ATPase PF02374.15 gi|336254903|ref|YP_004598010.1| - 0.11 11.6 0.0 0.16 11.1 0.0 1.4 1 0 0 1 1 1 0 Anion-transporting ATPase FF PF01846.19 gi|336254903|ref|YP_004598010.1| - 0.17 12.1 0.1 0.36 11.0 0.1 1.5 1 0 0 1 1 1 0 FF domain Arch_fla_DE PF04659.13 gi|336254904|ref|YP_004598011.1| - 1.4e-24 85.7 0.0 2.8e-24 84.8 0.0 1.5 1 0 0 1 1 1 1 Archaeal flagella protein FlaC_arch PF05377.11 gi|336254904|ref|YP_004598011.1| - 1.2e-20 73.7 4.9 2.1e-20 72.8 4.9 1.5 1 0 0 1 1 1 1 Flagella accessory protein C (FlaC) Sec34 PF04136.15 gi|336254904|ref|YP_004598011.1| - 0.0022 17.9 0.0 0.0035 17.2 0.0 1.2 1 0 0 1 1 1 1 Sec34-like family Dynactin_p22 PF07426.11 gi|336254904|ref|YP_004598011.1| - 0.021 14.7 0.5 0.033 14.1 0.5 1.2 1 0 0 1 1 1 0 Dynactin subunit p22 CcmH PF03918.14 gi|336254904|ref|YP_004598011.1| - 0.046 13.0 0.0 0.081 12.2 0.0 1.3 1 0 0 1 1 1 0 Cytochrome C biogenesis protein CENP-F_leu_zip PF10473.9 gi|336254904|ref|YP_004598011.1| - 0.059 13.4 0.8 0.1 12.6 0.8 1.3 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 ZapB PF06005.12 gi|336254904|ref|YP_004598011.1| - 0.078 13.4 1.5 0.14 12.7 1.5 1.3 1 0 0 1 1 1 0 Cell division protein ZapB Fmp27_WPPW PF10359.9 gi|336254904|ref|YP_004598011.1| - 0.1 11.5 0.0 0.17 10.7 0.0 1.3 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain XhlA PF10779.9 gi|336254904|ref|YP_004598011.1| - 0.18 12.0 2.6 0.53 10.5 2.6 1.8 1 0 0 1 1 1 0 Haemolysin XhlA LPP PF04728.13 gi|336254904|ref|YP_004598011.1| - 0.52 10.8 3.1 0.59 10.6 0.4 2.6 2 0 0 2 2 2 0 Lipoprotein leucine-zipper bZIP_1 PF00170.21 gi|336254904|ref|YP_004598011.1| - 0.72 10.0 1.4 1.6 8.9 0.5 1.7 1 1 1 2 2 2 0 bZIP transcription factor T2SSF PF00482.23 gi|336254907|ref|YP_004598014.1| - 1.8e-16 60.2 2.4 4.6e-12 46.0 0.7 3.6 4 0 0 4 4 4 2 Type II secretion system (T2SS), protein F DUF599 PF04654.12 gi|336254907|ref|YP_004598014.1| - 0.0013 18.2 2.8 0.0049 16.3 2.8 1.9 1 0 0 1 1 1 1 Protein of unknown function, DUF599 AAA_32 PF13654.6 gi|336254907|ref|YP_004598014.1| - 0.048 12.5 0.2 0.074 11.8 0.2 1.2 1 0 0 1 1 1 0 AAA domain Arch_fla_DE PF04659.13 gi|336254908|ref|YP_004598015.1| - 1.9e-27 95.0 0.0 3.5e-27 94.1 0.0 1.5 1 0 0 1 1 1 1 Archaeal flagella protein FlaC_arch PF05377.11 gi|336254908|ref|YP_004598015.1| - 3.1e-20 72.3 1.4 6.6e-20 71.3 1.4 1.6 1 0 0 1 1 1 1 Flagella accessory protein C (FlaC) Fmp27_WPPW PF10359.9 gi|336254908|ref|YP_004598015.1| - 0.056 12.3 0.0 0.081 11.8 0.0 1.2 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain bZIP_1 PF00170.21 gi|336254908|ref|YP_004598015.1| - 0.062 13.4 0.1 0.11 12.6 0.1 1.3 1 0 0 1 1 1 0 bZIP transcription factor Prefoldin PF02996.17 gi|336254908|ref|YP_004598015.1| - 0.13 12.2 2.2 0.63 10.0 0.1 2.2 2 0 0 2 2 2 0 Prefoldin subunit DUF812 PF05667.11 gi|336254908|ref|YP_004598015.1| - 0.21 10.4 0.2 0.32 9.8 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF812) XhlA PF10779.9 gi|336254908|ref|YP_004598015.1| - 10 6.4 6.6 0.6 10.4 1.0 1.9 2 0 0 2 2 2 0 Haemolysin XhlA Arch_flagellin PF01917.16 gi|336254909|ref|YP_004598016.1| - 3.5e-13 50.1 11.7 4.1e-13 49.8 11.7 1.0 1 0 0 1 1 1 1 Archaebacterial flagellin F420H2_quin_red PF04075.14 gi|336254909|ref|YP_004598016.1| - 0.027 14.6 0.2 0.032 14.3 0.2 1.3 1 0 0 1 1 1 0 F420H(2)-dependent quinone reductase Arch_flagellin PF01917.16 gi|336254910|ref|YP_004598017.1| - 6.3e-09 36.2 9.9 7.6e-09 36.0 9.9 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin Arch_flagellin PF01917.16 gi|336254911|ref|YP_004598018.1| - 2.7e-42 144.7 7.2 3.1e-42 144.5 7.2 1.0 1 0 0 1 1 1 1 Archaebacterial flagellin Arch_flagellin PF01917.16 gi|336254912|ref|YP_004598019.1| - 3.6e-43 147.6 12.7 4.2e-43 147.4 12.7 1.0 1 0 0 1 1 1 1 Archaebacterial flagellin DUF296 PF03479.15 gi|336254912|ref|YP_004598019.1| - 0.067 13.6 0.4 0.15 12.4 0.4 1.7 1 1 0 1 1 1 0 Plants and Prokaryotes Conserved (PCC) domain Pilin_N PF07790.11 gi|336254912|ref|YP_004598019.1| - 2.5 9.1 9.3 0.35 11.8 3.0 2.6 2 1 1 3 3 3 0 Archaeal Type IV pilin, N-terminal DUF2197 PF09963.9 gi|336254913|ref|YP_004598020.1| - 0.0024 18.1 0.4 0.003 17.8 0.4 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2197) zinc_ribbon_12 PF11331.8 gi|336254913|ref|YP_004598020.1| - 0.015 15.1 0.1 1.5 8.7 0.0 2.1 2 0 0 2 2 2 0 Probable zinc-ribbon domain zf_UBZ PF18439.1 gi|336254913|ref|YP_004598020.1| - 0.051 13.2 1.1 0.52 9.9 0.1 2.1 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger CheF-arch PF04283.12 gi|336254914|ref|YP_004598021.1| - 8.9e-71 238.1 2.7 1.2e-70 237.7 2.7 1.2 1 0 0 1 1 1 1 Chemotaxis signal transduction system protein F from archaea Vps36_ESCRT-II PF11605.8 gi|336254914|ref|YP_004598021.1| - 0.016 15.4 0.0 0.049 13.8 0.0 1.8 1 0 0 1 1 1 0 Vacuolar protein sorting protein 36 Vps36 DUF903 PF06004.12 gi|336254914|ref|YP_004598021.1| - 0.027 14.4 2.4 0.55 10.2 0.0 3.8 4 0 0 4 4 4 0 Bacterial protein of unknown function (DUF903) bPH_4 PF06713.11 gi|336254914|ref|YP_004598021.1| - 0.051 13.7 0.1 0.13 12.3 0.1 1.8 1 0 0 1 1 1 0 Bacterial PH domain HEAT_2 PF13646.6 gi|336254915|ref|YP_004598022.1| - 4.9e-54 180.7 27.0 3.9e-15 56.0 0.5 5.6 2 1 4 6 6 6 6 HEAT repeats HEAT PF02985.22 gi|336254915|ref|YP_004598022.1| - 1.4e-24 84.1 10.7 0.0032 17.6 0.0 9.6 10 0 0 10 10 10 6 HEAT repeat HEAT_EZ PF13513.6 gi|336254915|ref|YP_004598022.1| - 2.3e-21 75.9 17.3 0.00057 20.3 0.0 7.5 7 1 1 8 8 8 6 HEAT-like repeat HEAT_PBS PF03130.16 gi|336254915|ref|YP_004598022.1| - 5e-21 73.2 28.7 0.0023 18.4 0.8 10.3 10 0 0 10 10 10 6 PBS lyase HEAT-like repeat Arm PF00514.23 gi|336254915|ref|YP_004598022.1| - 1.6e-15 56.5 2.7 0.00058 19.8 0.0 7.8 7 2 3 10 10 10 3 Armadillo/beta-catenin-like repeat Adaptin_N PF01602.20 gi|336254915|ref|YP_004598022.1| - 1.3e-08 33.9 0.0 0.00015 20.5 0.1 4.2 3 1 1 4 4 4 2 Adaptin N terminal region Cnd1 PF12717.7 gi|336254915|ref|YP_004598022.1| - 1.2e-07 31.9 4.6 0.09 12.8 0.0 5.3 1 1 4 6 6 6 2 non-SMC mitotic condensation complex subunit 1 RasGEF_N_2 PF14663.6 gi|336254915|ref|YP_004598022.1| - 0.00045 20.6 0.4 5.4 7.5 0.0 4.5 3 1 1 5 5 5 1 Rapamycin-insensitive companion of mTOR RasGEF_N domain DUF3458_C PF17432.2 gi|336254915|ref|YP_004598022.1| - 0.014 14.8 0.6 0.014 14.8 0.6 1.9 2 1 1 3 3 3 0 Domain of unknown function (DUF3458_C) ARM repeats CLASP_N PF12348.8 gi|336254915|ref|YP_004598022.1| - 0.096 12.2 0.1 25 4.3 0.0 3.2 3 0 0 3 3 3 0 CLASP N terminal ALF PF03752.13 gi|336254915|ref|YP_004598022.1| - 2.4 8.2 12.1 2.3 8.2 1.9 4.2 4 0 0 4 4 4 0 Short repeats of unknown function HTH_31 PF13560.6 gi|336254915|ref|YP_004598022.1| - 5 7.6 7.6 8.2 6.9 0.1 3.7 3 1 1 4 4 4 0 Helix-turn-helix domain IMUP PF15761.5 gi|336254916|ref|YP_004598023.1| - 0.11 13.1 5.1 0.18 12.5 5.1 1.4 1 0 0 1 1 1 0 Immortalisation up-regulated protein CARDB PF07705.11 gi|336254917|ref|YP_004598024.1| - 1.5e-07 31.6 18.7 0.00094 19.4 1.0 5.4 3 2 3 6 6 6 4 CARDB YacG PF03884.14 gi|336254918|ref|YP_004598025.1| - 0.92 9.3 3.3 14 5.5 3.3 2.2 1 1 0 1 1 1 0 DNA gyrase inhibitor YacG PadR PF03551.14 gi|336254919|ref|YP_004598026.1| - 1.1e-08 34.9 0.1 2.1e-08 34.0 0.1 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family RTP PF02334.16 gi|336254919|ref|YP_004598026.1| - 0.11 13.2 0.1 0.23 12.1 0.1 1.6 2 0 0 2 2 2 0 Replication terminator protein DUF3708 PF12501.8 gi|336254919|ref|YP_004598026.1| - 0.2 11.4 0.6 0.31 10.8 0.6 1.6 1 1 0 1 1 1 0 Phosphate ATP-binding cassette transporter Ribosomal_S6e PF01092.19 gi|336254921|ref|YP_004598028.1| - 1.7e-41 141.1 0.0 1.9e-41 140.9 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S6e TetR_C_6 PF13977.6 gi|336254923|ref|YP_004598030.1| - 6e-14 52.3 3.4 6e-14 52.3 3.4 1.8 2 0 0 2 2 2 1 BetI-type transcriptional repressor, C-terminal TetR_N PF00440.23 gi|336254923|ref|YP_004598030.1| - 5.1e-10 39.0 0.0 1.4e-09 37.6 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory proteins, tetR family TetR_C_31 PF17940.1 gi|336254923|ref|YP_004598030.1| - 4e-06 27.0 5.9 4e-06 27.0 5.9 2.2 1 1 1 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_24 PF17932.1 gi|336254923|ref|YP_004598030.1| - 1.1e-05 25.7 0.3 2.9e-05 24.3 0.3 1.9 1 1 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_27 PF17935.1 gi|336254923|ref|YP_004598030.1| - 5.9e-05 23.1 0.1 0.00013 22.0 0.1 1.6 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_17 PF17922.1 gi|336254923|ref|YP_004598030.1| - 0.00017 21.6 0.0 0.00044 20.3 0.0 1.6 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_5 PF08360.11 gi|336254923|ref|YP_004598030.1| - 0.00035 20.7 0.0 0.00057 20.1 0.0 1.3 1 0 0 1 1 1 1 QacR-like protein, C-terminal region TetR_C_11 PF16859.5 gi|336254923|ref|YP_004598030.1| - 0.0075 16.6 1.6 0.0075 16.6 1.6 3.1 2 1 0 3 3 3 1 Tetracyclin repressor-like, C-terminal domain TetR_C_7 PF14246.6 gi|336254923|ref|YP_004598030.1| - 0.067 13.2 0.3 0.16 12.0 0.3 1.6 1 0 0 1 1 1 0 AefR-like transcriptional repressor, C-terminal domain TetR_C_13 PF16925.5 gi|336254923|ref|YP_004598030.1| - 0.091 12.7 0.0 0.15 12.0 0.0 1.5 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain TetR_C_37 PF18665.1 gi|336254923|ref|YP_004598030.1| - 0.091 13.4 0.0 0.18 12.4 0.0 1.5 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain TetR_C_29 PF17938.1 gi|336254923|ref|YP_004598030.1| - 0.13 12.4 0.0 0.25 11.5 0.0 1.4 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain TM2 PF05154.16 gi|336254925|ref|YP_004598032.1| - 0.039 14.3 1.3 0.039 14.3 1.3 1.6 2 0 0 2 2 2 0 TM2 domain SHOCT PF09851.9 gi|336254926|ref|YP_004598033.1| - 2.6e-06 27.0 0.2 4.1e-06 26.4 0.2 1.4 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.11 gi|336254926|ref|YP_004598033.1| - 0.0089 16.1 0.3 0.018 15.1 0.3 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1707) CCB1 PF12046.8 gi|336254926|ref|YP_004598033.1| - 0.024 14.0 1.5 0.059 12.7 0.0 1.9 1 1 1 2 2 2 0 Cofactor assembly of complex C subunit B DUF4834 PF16118.5 gi|336254926|ref|YP_004598033.1| - 0.057 14.4 1.8 1.3 10.0 1.8 2.2 1 1 0 1 1 1 0 Domain of unknown function (DUF4834) DUF4083 PF13314.6 gi|336254926|ref|YP_004598033.1| - 0.065 13.2 5.9 0.24 11.4 0.1 3.0 2 1 1 3 3 3 0 Domain of unknown function (DUF4083) FtsH_ext PF06480.15 gi|336254926|ref|YP_004598033.1| - 0.066 13.6 0.1 0.16 12.3 0.1 1.8 1 1 0 1 1 1 0 FtsH Extracellular GvpG PF05120.12 gi|336254926|ref|YP_004598033.1| - 0.067 13.2 0.2 0.1 12.6 0.2 1.2 1 0 0 1 1 1 0 Gas vesicle protein G Halogen_Hydrol PF10112.9 gi|336254926|ref|YP_004598033.1| - 0.15 12.0 0.0 0.18 11.8 0.0 1.2 1 0 0 1 1 1 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein DUF2207 PF09972.9 gi|336254926|ref|YP_004598033.1| - 0.21 10.3 0.0 0.21 10.3 0.0 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Trp_oprn_chp PF09534.10 gi|336254926|ref|YP_004598033.1| - 0.3 10.9 3.0 0.46 10.3 1.3 1.8 1 1 1 2 2 2 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) IncF PF17626.2 gi|336254926|ref|YP_004598033.1| - 0.72 10.2 7.1 1 9.7 7.1 1.2 1 0 0 1 1 1 0 Inclusion membrane protein F Phage_holin_3_6 PF07332.11 gi|336254926|ref|YP_004598033.1| - 0.75 9.9 10.6 1 9.4 10.6 1.2 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III Beta-Casp PF10996.8 gi|336254927|ref|YP_004598034.1| - 6.9e-13 48.9 0.0 1.4e-12 47.9 0.0 1.5 1 0 0 1 1 1 1 Beta-Casp domain RMMBL PF07521.12 gi|336254927|ref|YP_004598034.1| - 8.7e-11 41.6 0.0 3.5e-10 39.7 0.0 1.9 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B PF00753.27 gi|336254927|ref|YP_004598034.1| - 2.8e-09 37.3 9.1 3.4e-09 37.0 7.2 2.0 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|336254927|ref|YP_004598034.1| - 1.5e-07 31.2 1.0 5e-07 29.4 0.3 2.0 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|336254927|ref|YP_004598034.1| - 0.0011 18.4 0.0 0.002 17.6 0.0 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|336254927|ref|YP_004598034.1| - 0.028 14.3 0.0 0.093 12.6 0.0 1.8 1 1 0 1 1 1 0 Beta-lactamase superfamily domain DAO PF01266.24 gi|336254930|ref|YP_004598037.1| - 2.7e-43 148.9 2.4 3e-43 148.8 2.4 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase Amino_oxidase PF01593.24 gi|336254930|ref|YP_004598037.1| - 0.00025 20.5 0.0 0.00038 19.9 0.0 1.2 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase HI0933_like PF03486.14 gi|336254930|ref|YP_004598037.1| - 0.0039 15.9 0.2 0.014 14.1 0.0 1.8 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_2 PF07992.14 gi|336254930|ref|YP_004598037.1| - 0.05 12.8 0.0 0.81 8.9 0.0 2.5 2 1 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|336254930|ref|YP_004598037.1| - 0.18 11.0 0.3 0.45 9.7 0.3 1.6 2 0 0 2 2 2 0 FAD binding domain Pyr_redox_3 PF13738.6 gi|336254930|ref|YP_004598037.1| - 0.19 10.9 0.0 0.37 10.0 0.0 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|336254930|ref|YP_004598037.1| - 0.21 11.6 0.1 0.21 11.6 0.1 3.0 3 0 0 3 3 3 0 FAD-NAD(P)-binding NAD_binding_8 PF13450.6 gi|336254930|ref|YP_004598037.1| - 1.4 9.2 5.1 1.3 9.3 0.6 2.6 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain DUF5305 PF17231.2 gi|336254931|ref|YP_004598038.1| - 2.3e-51 174.3 0.0 7.8e-51 172.6 0.0 1.8 2 0 0 2 2 2 1 Family of unknown function (DUF5305) Peptidase_S24 PF00717.23 gi|336254932|ref|YP_004598039.1| - 2.8e-07 30.4 0.0 7.3e-07 29.1 0.0 1.7 1 1 0 1 1 1 1 Peptidase S24-like DUF1102 PF06510.11 gi|336254935|ref|YP_004598042.1| - 0.00016 21.9 1.5 0.00023 21.4 1.5 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF1102) Cupin_3 PF05899.12 gi|336254935|ref|YP_004598042.1| - 0.07 12.8 1.7 0.41 10.4 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF861) DUF4906 PF16249.5 gi|336254936|ref|YP_004598043.1| - 0.051 13.4 2.6 0.052 13.4 0.3 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4906) ASH PF15780.5 gi|336254936|ref|YP_004598043.1| - 0.065 13.4 1.1 0.11 12.7 1.1 1.4 1 0 0 1 1 1 0 Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin POC3_POC4 PF10448.9 gi|336254936|ref|YP_004598043.1| - 0.89 9.6 5.6 0.82 9.7 0.3 2.3 1 1 0 2 2 2 0 20S proteasome chaperone assembly proteins 3 and 4 SLAIN PF15301.6 gi|336254936|ref|YP_004598043.1| - 1.1 8.5 2.8 1.2 8.3 2.8 1.1 1 0 0 1 1 1 0 SLAIN motif-containing family Gp5_C PF06715.12 gi|336254936|ref|YP_004598043.1| - 7.2 7.0 14.4 18 5.7 5.5 3.7 4 0 0 4 4 4 0 Gp5 C-terminal repeat (3 copies) HTH_20 PF12840.7 gi|336254937|ref|YP_004598044.1| - 0.13 12.4 0.2 0.42 10.7 0.2 2.0 1 1 0 1 1 1 0 Helix-turn-helix domain Bac_luciferase PF00296.20 gi|336254939|ref|YP_004598046.1| - 1.4e-43 149.5 6.3 1.8e-43 149.2 6.3 1.1 1 0 0 1 1 1 1 Luciferase-like monooxygenase Radical_SAM PF04055.21 gi|336254939|ref|YP_004598046.1| - 0.0049 17.3 0.1 4.2 7.7 0.0 2.3 1 1 0 2 2 2 2 Radical SAM superfamily TetR_C_16 PF17920.1 gi|336254939|ref|YP_004598046.1| - 0.096 12.9 0.1 0.28 11.4 0.0 1.8 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain Peptidase_M42 PF05343.14 gi|336254940|ref|YP_004598047.1| - 4.4e-80 268.8 0.1 5.1e-80 268.6 0.1 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M18 PF02127.15 gi|336254940|ref|YP_004598047.1| - 0.12 11.1 0.0 4.6 5.9 0.0 2.1 1 1 0 2 2 2 0 Aminopeptidase I zinc metalloprotease (M18) Aconitase PF00330.20 gi|336254941|ref|YP_004598048.1| - 1.3e-108 364.0 0.2 7.4e-107 358.2 0.2 2.2 1 1 0 1 1 1 1 Aconitase family (aconitate hydratase) Aconitase_C PF00694.19 gi|336254941|ref|YP_004598048.1| - 4e-20 72.5 0.0 8e-20 71.5 0.0 1.5 1 0 0 1 1 1 1 Aconitase C-terminal domain DUF521 PF04412.13 gi|336254941|ref|YP_004598048.1| - 0.0023 16.7 0.0 0.0035 16.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF521) dUTPase PF00692.19 gi|336254942|ref|YP_004598049.1| - 1.1e-11 44.6 0.0 1.6e-11 44.0 0.0 1.3 1 0 0 1 1 1 1 dUTPase DCD PF06559.11 gi|336254942|ref|YP_004598049.1| - 0.0069 15.2 0.0 0.0086 14.9 0.0 1.3 1 1 0 1 1 1 1 2'-deoxycytidine 5'-triphosphate deaminase (DCD) YdjM PF04307.14 gi|336254943|ref|YP_004598050.1| - 0.25 10.6 21.1 9.6 5.5 20.9 2.6 1 1 0 1 1 1 0 LexA-binding, inner membrane-associated putative hydrolase CopD PF05425.13 gi|336254944|ref|YP_004598051.1| - 4e-05 24.0 8.5 4e-05 24.0 8.5 1.9 2 0 0 2 2 2 1 Copper resistance protein D IncD PF17628.2 gi|336254944|ref|YP_004598051.1| - 0.66 9.8 7.5 0.13 12.1 2.9 2.1 1 1 2 3 3 3 0 Inclusion membrane protein D NAD_binding_2 PF03446.15 gi|336254946|ref|YP_004598053.1| - 2.1e-38 132.0 0.0 3e-38 131.5 0.0 1.2 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 6PGD PF00393.19 gi|336254946|ref|YP_004598053.1| - 4.3e-24 85.4 0.0 6.4e-24 84.8 0.0 1.3 1 0 0 1 1 1 1 6-phosphogluconate dehydrogenase, C-terminal domain F420_oxidored PF03807.17 gi|336254946|ref|YP_004598053.1| - 3e-06 27.7 0.0 4.6e-06 27.1 0.0 1.3 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_11 PF14833.6 gi|336254946|ref|YP_004598053.1| - 2.4e-05 24.5 0.1 0.0049 17.1 0.0 3.1 2 1 1 3 3 3 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 3HCDH_N PF02737.18 gi|336254946|ref|YP_004598053.1| - 0.00028 20.8 0.1 0.00038 20.4 0.1 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|336254946|ref|YP_004598053.1| - 0.00037 20.7 0.2 0.00074 19.8 0.0 1.6 2 0 0 2 2 2 1 TrkA-N domain 2-Hacid_dh_C PF02826.19 gi|336254946|ref|YP_004598053.1| - 0.00096 18.5 0.0 0.0013 18.1 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|336254946|ref|YP_004598053.1| - 0.022 14.3 0.0 0.061 12.9 0.1 1.7 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DapB_N PF01113.20 gi|336254946|ref|YP_004598053.1| - 0.34 11.0 1.2 0.83 9.8 1.2 1.7 1 1 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Cdc6_C PF09079.11 gi|336254947|ref|YP_004598054.1| - 3.3e-21 75.0 0.6 1.3e-20 73.1 0.1 2.4 3 0 0 3 3 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|336254947|ref|YP_004598054.1| - 1.2e-11 45.1 0.0 2.7e-11 43.9 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|336254947|ref|YP_004598054.1| - 8e-10 39.4 0.0 2.7e-08 34.4 0.0 2.9 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|336254947|ref|YP_004598054.1| - 1.1e-06 29.1 0.0 3e-06 27.7 0.0 1.8 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TniB PF05621.11 gi|336254947|ref|YP_004598054.1| - 0.00082 18.8 0.0 0.0014 18.1 0.0 1.3 1 0 0 1 1 1 1 Bacterial TniB protein ATPase_2 PF01637.18 gi|336254947|ref|YP_004598054.1| - 0.00091 19.2 0.0 0.0018 18.3 0.0 1.5 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea NACHT PF05729.12 gi|336254947|ref|YP_004598054.1| - 0.0019 18.2 0.0 0.0036 17.2 0.0 1.5 1 0 0 1 1 1 1 NACHT domain AAA_5 PF07728.14 gi|336254947|ref|YP_004598054.1| - 0.0059 16.6 0.0 0.041 13.9 0.0 2.2 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) DUF815 PF05673.13 gi|336254947|ref|YP_004598054.1| - 0.012 14.8 0.0 0.02 14.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) NB-ARC PF00931.22 gi|336254947|ref|YP_004598054.1| - 0.015 14.5 0.0 0.1 11.8 0.0 2.2 3 0 0 3 3 3 0 NB-ARC domain AAA_18 PF13238.6 gi|336254947|ref|YP_004598054.1| - 0.019 15.5 0.2 0.32 11.5 0.0 2.5 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|336254947|ref|YP_004598054.1| - 0.044 13.4 0.1 0.47 10.0 0.0 2.4 2 1 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|336254947|ref|YP_004598054.1| - 0.048 14.1 0.0 0.094 13.1 0.0 1.5 1 0 0 1 1 1 0 RNA helicase KAP_NTPase PF07693.14 gi|336254947|ref|YP_004598054.1| - 0.048 12.9 0.0 1.4 8.0 0.0 2.2 1 1 1 2 2 2 0 KAP family P-loop domain TrwB_AAD_bind PF10412.9 gi|336254947|ref|YP_004598054.1| - 0.05 12.5 0.0 0.2 10.5 0.0 1.8 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain AAA_7 PF12775.7 gi|336254947|ref|YP_004598054.1| - 0.071 12.6 0.0 0.13 11.8 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_2 PF07724.14 gi|336254947|ref|YP_004598054.1| - 0.094 12.8 0.0 0.24 11.5 0.0 1.7 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) AAA_32 PF13654.6 gi|336254947|ref|YP_004598054.1| - 0.095 11.5 0.1 7 5.3 0.0 2.2 2 0 0 2 2 2 0 AAA domain TsaE PF02367.17 gi|336254947|ref|YP_004598054.1| - 0.14 12.1 0.0 0.35 10.9 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_24 PF13479.6 gi|336254947|ref|YP_004598054.1| - 0.15 11.7 0.1 0.32 10.7 0.1 1.5 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|336254947|ref|YP_004598054.1| - 0.16 11.9 0.0 0.7 9.8 0.0 2.0 2 0 0 2 2 2 0 RsgA GTPase HNH_2 PF13391.6 gi|336254948|ref|YP_004598055.1| - 4.4e-10 39.5 0.1 9.7e-10 38.4 0.1 1.6 1 0 0 1 1 1 1 HNH endonuclease AAA_assoc_C PF09821.9 gi|336254948|ref|YP_004598055.1| - 0.00098 19.6 0.0 0.082 13.4 0.0 2.5 2 0 0 2 2 2 1 C-terminal AAA-associated domain HemN_C PF06969.16 gi|336254948|ref|YP_004598055.1| - 0.0016 18.5 0.4 0.011 15.8 0.1 2.3 2 0 0 2 2 2 1 HemN C-terminal domain Mrr_N PF14338.6 gi|336254948|ref|YP_004598055.1| - 0.037 14.2 0.1 21 5.3 0.0 3.4 3 0 0 3 3 3 0 Mrr N-terminal domain DUF4423 PF14394.6 gi|336254948|ref|YP_004598055.1| - 0.075 12.7 0.0 0.16 11.6 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HNH PF01844.23 gi|336254948|ref|YP_004598055.1| - 0.085 13.0 0.2 0.16 12.2 0.2 1.4 1 0 0 1 1 1 0 HNH endonuclease HTH_45 PF14947.6 gi|336254948|ref|YP_004598055.1| - 0.16 12.0 0.0 3.8 7.6 0.0 2.3 2 0 0 2 2 2 0 Winged helix-turn-helix FokI_C PF02980.16 gi|336254948|ref|YP_004598055.1| - 0.19 11.8 0.0 0.43 10.6 0.0 1.6 2 0 0 2 2 2 0 Restriction endonuclease FokI, catalytic domain VRR_NUC PF08774.11 gi|336254949|ref|YP_004598056.1| - 0.17 11.9 0.0 0.48 10.5 0.0 1.7 2 0 0 2 2 2 0 VRR-NUC domain Cuticle_1 PF08140.11 gi|336254950|ref|YP_004598057.1| - 0.11 12.5 0.0 7.8 6.6 0.0 2.3 2 0 0 2 2 2 0 Crustacean cuticle protein repeat DUF4225 PF13988.6 gi|336254951|ref|YP_004598058.1| - 0.05 13.1 2.4 0.057 13.0 2.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4225) DUF393 PF04134.12 gi|336254952|ref|YP_004598059.1| - 1.5e-10 42.4 0.1 1.8e-10 42.2 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function, DUF393 LMF1 PF06762.14 gi|336254954|ref|YP_004598061.1| - 2.4e-126 422.4 15.3 4.5e-67 227.1 0.3 2.7 2 1 1 3 3 3 2 Lipase maturation factor Nrap_D5 PF17406.2 gi|336254954|ref|YP_004598061.1| - 0.01 15.6 0.3 0.018 14.8 0.3 1.3 1 0 0 1 1 1 0 Nrap protein PAP/OAS1-like domain 5 HpcH_HpaI PF03328.14 gi|336254955|ref|YP_004598062.1| - 5.2e-28 97.7 0.0 6.9e-28 97.3 0.0 1.1 1 0 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family Sulfatase PF00884.23 gi|336254958|ref|YP_004598065.1| - 1.5e-44 152.6 0.0 1.9e-44 152.3 0.0 1.1 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 gi|336254958|ref|YP_004598065.1| - 2.2e-17 63.7 3.5 5.2e-17 62.5 0.8 2.4 2 1 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase DUF1501 PF07394.12 gi|336254958|ref|YP_004598065.1| - 0.0015 17.7 0.0 0.0041 16.2 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF1501) Phosphoesterase PF04185.14 gi|336254958|ref|YP_004598065.1| - 0.032 13.4 0.2 0.17 11.1 0.1 1.9 2 0 0 2 2 2 0 Phosphoesterase family DUF4994 PF16385.5 gi|336254958|ref|YP_004598065.1| - 0.061 13.3 0.0 0.2 11.6 0.0 1.9 1 1 0 1 1 1 0 Domain of unknown function DUF229 PF02995.17 gi|336254958|ref|YP_004598065.1| - 0.3 9.6 0.0 0.37 9.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF229) Sulfatase PF00884.23 gi|336254959|ref|YP_004598066.1| - 3.3e-47 161.4 0.0 4.3e-47 161.0 0.0 1.2 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 gi|336254959|ref|YP_004598066.1| - 1.2e-08 34.9 0.3 0.0038 16.9 0.2 2.4 2 1 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF4976 PF16347.5 gi|336254959|ref|YP_004598066.1| - 7.8e-07 29.3 1.1 0.025 14.8 0.4 2.4 1 1 1 2 2 2 2 Domain of unknown function (DUF4976) DUF1501 PF07394.12 gi|336254959|ref|YP_004598066.1| - 0.0017 17.5 0.7 0.003 16.7 0.3 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF1501) Sulfatase_C PF14707.6 gi|336254959|ref|YP_004598066.1| - 0.015 16.0 0.0 0.037 14.7 0.0 1.6 1 0 0 1 1 1 0 C-terminal region of aryl-sulfatase DUF4994 PF16385.5 gi|336254959|ref|YP_004598066.1| - 0.019 14.8 0.6 0.67 9.9 0.6 2.3 1 1 0 1 1 1 0 Domain of unknown function DUF229 PF02995.17 gi|336254959|ref|YP_004598066.1| - 0.23 10.0 0.0 0.32 9.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF229) IU_nuc_hydro PF01156.19 gi|336254961|ref|YP_004598068.1| - 1.4e-78 264.5 0.7 1.7e-78 264.3 0.7 1.0 1 0 0 1 1 1 1 Inosine-uridine preferring nucleoside hydrolase CMD PF02627.20 gi|336254962|ref|YP_004598069.1| - 3.6e-13 49.4 0.2 5.1e-13 48.9 0.2 1.2 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family PseudoU_synth_1 PF01416.20 gi|336254963|ref|YP_004598070.1| - 7.5e-15 55.3 0.0 4.4e-11 43.2 0.0 2.4 2 0 0 2 2 2 2 tRNA pseudouridine synthase DUF4212 PF13937.6 gi|336254964|ref|YP_004598071.1| - 0.068 13.6 0.3 0.068 13.6 0.3 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4212) DUF4397 PF14344.6 gi|336254965|ref|YP_004598072.1| - 1.7e-32 112.7 2.0 1.5e-18 67.7 0.3 3.5 3 0 0 3 3 3 3 Domain of unknown function (DUF4397) TAT_signal PF10518.9 gi|336254965|ref|YP_004598072.1| - 0.037 13.9 0.3 0.067 13.1 0.3 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence PadR PF03551.14 gi|336254966|ref|YP_004598073.1| - 2.1e-13 50.1 0.2 2.4e-13 49.8 0.2 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.6 gi|336254966|ref|YP_004598073.1| - 9.6e-05 22.8 0.0 0.00012 22.5 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_45 PF14947.6 gi|336254966|ref|YP_004598073.1| - 0.00015 21.7 0.0 0.0019 18.1 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DUF4364 PF14277.6 gi|336254966|ref|YP_004598073.1| - 0.0045 16.8 0.0 0.0048 16.7 0.0 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4364) DUF1495 PF07381.11 gi|336254966|ref|YP_004598073.1| - 0.0047 16.7 0.0 0.007 16.2 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) HTH_34 PF13601.6 gi|336254966|ref|YP_004598073.1| - 0.0086 16.2 0.0 0.012 15.8 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF505 PF04458.12 gi|336254966|ref|YP_004598073.1| - 0.0086 14.5 0.0 0.0096 14.3 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF505) Replic_Relax PF13814.6 gi|336254966|ref|YP_004598073.1| - 0.012 15.6 0.1 0.015 15.4 0.1 1.1 1 0 0 1 1 1 0 Replication-relaxation HxlR PF01638.17 gi|336254966|ref|YP_004598073.1| - 0.027 14.3 0.0 0.032 14.1 0.0 1.2 1 0 0 1 1 1 0 HxlR-like helix-turn-helix Penicillinase_R PF03965.16 gi|336254966|ref|YP_004598073.1| - 0.071 13.5 0.0 0.071 13.5 0.0 1.2 1 0 0 1 1 1 0 Penicillinase repressor NUDIX PF00293.28 gi|336254967|ref|YP_004598074.1| - 4.4e-11 43.0 0.5 6e-11 42.5 0.5 1.2 1 0 0 1 1 1 1 NUDIX domain Pentapeptide_4 PF13599.6 gi|336254968|ref|YP_004598075.1| - 0.0042 17.2 0.2 0.024 14.8 0.0 2.3 2 1 0 2 2 2 1 Pentapeptide repeats (9 copies) DUF5629 PF18629.1 gi|336254968|ref|YP_004598075.1| - 0.39 11.3 4.8 3.8 8.1 0.1 3.0 2 1 0 2 2 2 0 Family of unknown function (DUF5629) TGT PF01702.18 gi|336254970|ref|YP_004598077.1| - 3e-78 263.4 0.0 4.4e-78 262.9 0.0 1.2 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase TGT_C1 PF14809.6 gi|336254970|ref|YP_004598077.1| - 0.0006 20.1 0.2 0.049 14.0 0.0 2.5 2 0 0 2 2 2 1 C1 domain of tRNA-guanine transglycosylase dimerisation HalOD1 PF18545.1 gi|336254971|ref|YP_004598078.1| - 1.7e-24 85.9 0.0 2.6e-24 85.3 0.0 1.3 1 0 0 1 1 1 1 Halobacterial output domain 1 HTH_24 PF13412.6 gi|336254972|ref|YP_004598079.1| - 3.9e-14 51.9 0.1 1.6e-13 50.0 0.1 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|336254972|ref|YP_004598079.1| - 1e-13 50.9 3.2 1.5e-13 50.4 2.0 1.9 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_20 PF12840.7 gi|336254972|ref|YP_004598079.1| - 2.8e-07 30.5 0.1 1.3e-06 28.4 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|336254972|ref|YP_004598079.1| - 4.2e-06 26.6 0.0 7.9e-06 25.7 0.0 1.4 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.7 gi|336254972|ref|YP_004598079.1| - 2.3e-05 24.2 0.1 0.00037 20.3 0.0 2.2 2 0 0 2 2 2 1 MarR family HTH_28 PF13518.6 gi|336254972|ref|YP_004598079.1| - 4.6e-05 23.5 0.1 0.00011 22.3 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_CodY PF08222.11 gi|336254972|ref|YP_004598079.1| - 4.7e-05 22.8 0.3 0.00013 21.5 0.3 1.7 1 0 0 1 1 1 1 CodY helix-turn-helix domain HTH_27 PF13463.6 gi|336254972|ref|YP_004598079.1| - 0.00031 21.2 0.2 0.0011 19.5 0.1 1.9 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 gi|336254972|ref|YP_004598079.1| - 0.0007 19.5 0.0 0.0038 17.2 0.0 2.0 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_23 PF13384.6 gi|336254972|ref|YP_004598079.1| - 0.001 18.8 0.1 0.0019 18.0 0.1 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_10 PF04967.12 gi|336254972|ref|YP_004598079.1| - 0.0026 17.5 0.1 0.0047 16.7 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_Tnp_ISL3 PF13542.6 gi|336254972|ref|YP_004598079.1| - 0.0037 16.7 0.2 0.0081 15.6 0.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_DeoR PF08220.12 gi|336254972|ref|YP_004598079.1| - 0.0081 15.9 0.1 0.018 14.7 0.1 1.6 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_30 PF13556.6 gi|336254972|ref|YP_004598079.1| - 0.0098 15.7 0.2 0.032 14.0 0.2 1.9 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain MarR PF01047.22 gi|336254972|ref|YP_004598079.1| - 0.012 15.6 0.0 0.037 13.9 0.0 1.8 2 0 0 2 2 2 0 MarR family Sigma70_r4_2 PF08281.12 gi|336254972|ref|YP_004598079.1| - 0.012 15.3 0.1 0.031 14.0 0.1 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 Rrf2 PF02082.20 gi|336254972|ref|YP_004598079.1| - 0.018 15.4 0.0 0.062 13.7 0.0 1.8 2 0 0 2 2 1 0 Transcriptional regulator Fe_dep_repress PF01325.19 gi|336254972|ref|YP_004598079.1| - 0.023 14.9 0.0 0.066 13.4 0.0 1.7 2 0 0 2 2 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_36 PF13730.6 gi|336254972|ref|YP_004598079.1| - 0.023 14.6 0.0 0.039 13.9 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain TxDE PF18711.1 gi|336254972|ref|YP_004598079.1| - 0.03 14.4 0.0 5.5 7.2 0.0 2.3 2 0 0 2 2 2 0 Toxoflavin-degrading enzyme GntR PF00392.21 gi|336254972|ref|YP_004598079.1| - 0.033 13.8 1.9 0.057 13.1 0.1 2.2 3 0 0 3 3 3 0 Bacterial regulatory proteins, gntR family HTH_5 PF01022.20 gi|336254972|ref|YP_004598079.1| - 0.04 13.8 0.0 0.072 13.0 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family PaaX PF07848.12 gi|336254972|ref|YP_004598079.1| - 0.05 13.8 0.1 0.9 9.8 0.1 2.2 2 0 0 2 2 2 0 PaaX-like protein TrmB PF01978.19 gi|336254972|ref|YP_004598079.1| - 0.05 13.5 0.0 0.13 12.1 0.0 1.7 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Nkap_C PF06047.11 gi|336254972|ref|YP_004598079.1| - 0.053 13.6 0.1 0.98 9.6 0.0 2.1 1 1 0 2 2 2 0 NF-kappa-B-activating protein C-terminal domain HTH_47 PF16221.5 gi|336254972|ref|YP_004598079.1| - 0.074 12.6 0.1 1.3 8.6 0.0 2.2 2 0 0 2 2 2 0 winged helix-turn-helix LexA_DNA_bind PF01726.16 gi|336254972|ref|YP_004598079.1| - 0.098 12.4 0.0 0.19 11.5 0.0 1.5 1 0 0 1 1 1 0 LexA DNA binding domain HTH_IclR PF09339.10 gi|336254972|ref|YP_004598079.1| - 0.11 12.3 0.1 0.26 11.1 0.1 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain Get5_C PF18514.1 gi|336254972|ref|YP_004598079.1| - 0.13 12.0 0.2 5 6.9 0.0 2.9 3 0 0 3 3 3 0 Get5 C-terminal domain DDRGK PF09756.9 gi|336254972|ref|YP_004598079.1| - 0.17 11.4 0.0 0.29 10.7 0.0 1.3 1 0 0 1 1 1 0 DDRGK domain HemY_N PF07219.13 gi|336254973|ref|YP_004598080.1| - 0.046 13.9 1.5 0.069 13.3 1.5 1.2 1 0 0 1 1 1 0 HemY protein N-terminus NfeD PF01957.18 gi|336254973|ref|YP_004598080.1| - 0.092 13.1 2.6 0.82 10.1 2.6 2.1 1 1 0 1 1 1 0 NfeD-like C-terminal, partner-binding DUF5591 PF17884.1 gi|336254974|ref|YP_004598081.1| - 2.6e-60 202.8 0.6 3.8e-60 202.2 0.6 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF5591) TGT_C2 PF14810.6 gi|336254974|ref|YP_004598081.1| - 1.2e-22 79.8 0.0 3.7e-22 78.2 0.0 1.9 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase TGT PF01702.18 gi|336254974|ref|YP_004598081.1| - 1.8e-13 50.4 0.1 5e-13 48.9 0.1 1.8 2 1 0 2 2 2 1 Queuine tRNA-ribosyltransferase PUA PF01472.20 gi|336254974|ref|YP_004598081.1| - 2.6e-12 46.5 0.8 7.4e-12 45.1 0.6 1.8 2 0 0 2 2 2 1 PUA domain PRP21_like_P PF12230.8 gi|336254975|ref|YP_004598082.1| - 0.16 11.8 0.0 0.17 11.8 0.0 1.1 1 0 0 1 1 1 0 Pre-mRNA splicing factor PRP21 like protein Fe_dep_repress PF01325.19 gi|336254976|ref|YP_004598083.1| - 2.8e-13 49.9 0.1 7.1e-13 48.6 0.0 1.7 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.7 gi|336254976|ref|YP_004598083.1| - 6.4e-07 29.2 0.0 1.4e-06 28.1 0.0 1.6 1 0 0 1 1 1 1 MarR family Fe_dep_repr_C PF02742.15 gi|336254976|ref|YP_004598083.1| - 9.1e-05 22.5 0.2 0.00014 21.8 0.2 1.3 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain HTH_IclR PF09339.10 gi|336254976|ref|YP_004598083.1| - 0.0012 18.6 0.1 0.0028 17.4 0.1 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.22 gi|336254976|ref|YP_004598083.1| - 0.0026 17.6 0.0 0.0048 16.8 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_12 PF08461.10 gi|336254976|ref|YP_004598083.1| - 0.012 15.6 0.6 0.2 11.6 0.1 2.5 2 1 0 2 2 2 0 Ribonuclease R winged-helix domain HTH_27 PF13463.6 gi|336254976|ref|YP_004598083.1| - 0.023 15.2 0.0 0.043 14.3 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain TrmB PF01978.19 gi|336254976|ref|YP_004598083.1| - 0.033 14.1 0.2 0.16 11.9 0.0 2.3 2 2 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|336254976|ref|YP_004598083.1| - 0.034 13.7 0.0 0.078 12.6 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|336254976|ref|YP_004598083.1| - 0.047 13.7 0.0 1.1 9.3 0.0 2.2 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|336254976|ref|YP_004598083.1| - 0.058 13.2 0.0 0.1 12.4 0.0 1.4 1 0 0 1 1 1 0 LexA DNA binding domain Ferritin PF00210.24 gi|336254977|ref|YP_004598084.1| - 5.9e-34 117.0 8.5 7e-34 116.8 8.5 1.1 1 0 0 1 1 1 1 Ferritin-like domain CorA PF01544.18 gi|336254977|ref|YP_004598084.1| - 0.088 12.1 2.6 0.1 11.9 2.0 1.3 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein DUF1451 PF07295.11 gi|336254977|ref|YP_004598084.1| - 0.094 12.7 7.4 0.096 12.7 1.3 2.5 1 1 1 2 2 2 0 Zinc-ribbon containing domain Osmo_CC PF08946.10 gi|336254977|ref|YP_004598084.1| - 0.34 11.2 8.7 0.34 11.2 0.1 3.1 3 0 0 3 3 3 0 Osmosensory transporter coiled coil DUF308 PF03729.13 gi|336254978|ref|YP_004598085.1| - 1.3e-17 63.9 36.6 4.9e-08 33.2 8.9 3.1 1 1 2 3 3 3 3 Short repeat of unknown function (DUF308) DUF4538 PF15061.6 gi|336254978|ref|YP_004598085.1| - 0.14 11.9 8.5 1 9.2 0.2 3.6 3 0 0 3 3 3 0 Domain of unknown function (DUF4538) DUF2070 PF09843.9 gi|336254978|ref|YP_004598085.1| - 7.5 4.7 8.6 1.7 6.8 5.5 1.4 1 1 0 1 1 1 0 Predicted membrane protein (DUF2070) Bac_luciferase PF00296.20 gi|336254979|ref|YP_004598086.1| - 4.5e-40 138.0 5.5 6e-40 137.6 5.4 1.3 1 1 0 1 1 1 1 Luciferase-like monooxygenase EF-1_beta_acid PF10587.9 gi|336254979|ref|YP_004598086.1| - 4.3 7.9 5.3 10 6.7 5.3 1.6 1 0 0 1 1 1 0 Eukaryotic elongation factor 1 beta central acidic region BAT PF15915.5 gi|336254980|ref|YP_004598087.1| - 6.1e-38 130.1 11.4 6.1e-38 130.1 11.4 2.7 3 0 0 3 3 3 1 GAF and HTH_10 associated domain GAF_2 PF13185.6 gi|336254980|ref|YP_004598087.1| - 1.2e-21 77.5 0.9 2.9e-21 76.2 0.2 2.1 2 0 0 2 2 2 1 GAF domain HTH_10 PF04967.12 gi|336254980|ref|YP_004598087.1| - 9.3e-21 73.4 0.0 2.4e-20 72.1 0.0 1.8 1 0 0 1 1 1 1 HTH DNA binding domain Response_reg PF00072.24 gi|336254980|ref|YP_004598087.1| - 1.7e-17 63.6 0.2 3.7e-16 59.3 0.2 2.8 2 1 0 2 2 2 1 Response regulator receiver domain GAF PF01590.26 gi|336254980|ref|YP_004598087.1| - 6.8e-10 39.7 0.0 1.7e-09 38.4 0.0 1.7 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.6 gi|336254980|ref|YP_004598087.1| - 2.4e-05 24.7 0.0 0.00012 22.5 0.0 2.2 2 0 0 2 2 2 1 GAF domain Sigma70_r4_2 PF08281.12 gi|336254980|ref|YP_004598087.1| - 0.001 18.7 0.1 0.024 14.3 0.0 3.0 2 1 0 2 2 2 1 Sigma-70, region 4 HTH_24 PF13412.6 gi|336254980|ref|YP_004598087.1| - 0.0066 16.0 0.0 0.015 14.8 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding GerE PF00196.19 gi|336254980|ref|YP_004598087.1| - 0.076 12.6 0.0 0.16 11.5 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family Response_reg PF00072.24 gi|336254981|ref|YP_004598088.1| - 3.4e-22 78.7 0.0 4e-22 78.5 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain PAS_4 PF08448.10 gi|336254982|ref|YP_004598089.1| - 1.4e-72 240.9 30.2 2.5e-13 50.2 0.8 7.6 8 0 0 8 8 8 6 PAS fold PAS PF00989.25 gi|336254982|ref|YP_004598089.1| - 1.4e-58 195.8 0.6 5.5e-13 48.9 0.0 7.0 7 0 0 7 7 7 5 PAS fold PAS_9 PF13426.7 gi|336254982|ref|YP_004598089.1| - 4.6e-49 165.0 0.0 2e-11 44.0 0.0 7.5 7 0 0 7 7 7 6 PAS domain PAS_8 PF13188.7 gi|336254982|ref|YP_004598089.1| - 6.6e-34 115.4 7.4 8.7e-10 38.4 0.0 7.0 6 0 0 6 6 6 5 PAS domain HATPase_c PF02518.26 gi|336254982|ref|YP_004598089.1| - 5.4e-27 94.5 0.1 6.5e-26 91.0 0.0 2.5 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.12 gi|336254982|ref|YP_004598089.1| - 2.5e-21 75.8 1.4 0.00041 20.6 0.0 6.6 7 0 0 7 7 6 5 PAS fold PAS_7 PF12860.7 gi|336254982|ref|YP_004598089.1| - 1.8e-19 70.0 6.1 3.2e-06 27.3 0.0 8.9 7 2 0 7 7 7 3 PAS fold GAF_3 PF13492.6 gi|336254982|ref|YP_004598089.1| - 3.8e-17 62.8 0.0 1.5e-06 28.6 0.1 3.9 4 0 0 4 4 3 2 GAF domain GAF_2 PF13185.6 gi|336254982|ref|YP_004598089.1| - 5.3e-12 46.2 10.6 3.2e-09 37.2 1.2 4.9 4 1 0 4 4 4 2 GAF domain GAF PF01590.26 gi|336254982|ref|YP_004598089.1| - 1.5e-10 41.8 0.5 7.8e-05 23.3 0.2 3.4 3 0 0 3 3 3 2 GAF domain HisKA PF00512.25 gi|336254982|ref|YP_004598089.1| - 8.7e-10 38.5 0.1 8.7e-10 38.5 0.1 4.0 3 1 1 4 4 4 1 His Kinase A (phospho-acceptor) domain sCache_like PF16736.5 gi|336254982|ref|YP_004598089.1| - 0.00031 20.8 0.6 1.4 9.0 0.0 3.5 4 0 0 4 4 4 2 Single Cache-like HATPase_c_5 PF14501.6 gi|336254982|ref|YP_004598089.1| - 0.00059 19.7 0.0 0.0014 18.5 0.0 1.6 1 0 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.6 gi|336254982|ref|YP_004598089.1| - 0.015 15.2 0.0 0.032 14.0 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GCN5L1 PF06320.13 gi|336254982|ref|YP_004598089.1| - 0.076 13.2 0.2 0.47 10.6 0.1 2.4 2 0 0 2 2 1 0 GCN5-like protein 1 (GCN5L1) Peripla_BP_6 PF13458.6 gi|336254983|ref|YP_004598090.1| - 9.6e-29 101.1 10.5 1.2e-28 100.7 10.5 1.1 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.28 gi|336254983|ref|YP_004598090.1| - 4.1e-19 68.9 0.0 5.4e-19 68.5 0.0 1.1 1 0 0 1 1 1 1 Receptor family ligand binding region MCPsignal PF00015.21 gi|336254984|ref|YP_004598091.1| - 1.4e-37 129.2 25.2 1.4e-37 129.2 25.2 4.7 1 1 3 4 4 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 gi|336254984|ref|YP_004598091.1| - 2.1e-13 50.4 1.6 2.1e-13 50.4 1.6 5.2 6 0 0 6 6 5 2 HAMP domain dCache_1 PF02743.18 gi|336254984|ref|YP_004598091.1| - 4.5e-09 36.5 0.3 4.5e-09 36.5 0.3 3.9 3 2 0 3 3 2 1 Cache domain DUF948 PF06103.11 gi|336254984|ref|YP_004598091.1| - 2.7e-06 27.5 53.3 0.00018 21.7 3.4 7.4 4 3 3 7 7 7 3 Bacterial protein of unknown function (DUF948) Laminin_II PF06009.12 gi|336254984|ref|YP_004598091.1| - 0.082 12.9 49.4 0.98 9.4 8.0 5.7 2 2 3 5 5 5 0 Laminin Domain II DUF3584 PF12128.8 gi|336254984|ref|YP_004598091.1| - 0.11 9.9 56.2 0.21 9.0 30.5 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3584) Retrotrans_gag PF03732.17 gi|336254984|ref|YP_004598091.1| - 0.17 12.2 1.2 6.4 7.1 0.1 3.5 3 0 0 3 3 2 0 Retrotransposon gag protein Fez1 PF06818.15 gi|336254984|ref|YP_004598091.1| - 0.21 12.0 45.9 0.41 11.1 10.4 3.6 2 1 1 3 3 3 0 Fez1 DUF1664 PF07889.12 gi|336254984|ref|YP_004598091.1| - 0.22 11.6 39.5 0.071 13.2 2.9 6.5 2 2 3 5 5 5 0 Protein of unknown function (DUF1664) BLOC1_2 PF10046.9 gi|336254984|ref|YP_004598091.1| - 0.47 10.8 34.2 0.081 13.2 4.0 6.0 3 2 1 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 MbeD_MobD PF04899.12 gi|336254984|ref|YP_004598091.1| - 0.77 9.9 5.2 13 5.9 0.3 3.3 2 0 0 2 2 2 0 MbeD/MobD like Syntaxin_2 PF14523.6 gi|336254984|ref|YP_004598091.1| - 0.92 9.9 12.7 16 6.0 2.1 5.0 2 1 3 5 5 5 0 Syntaxin-like protein MAD PF05557.13 gi|336254984|ref|YP_004598091.1| - 1.7 6.9 43.1 0.047 12.1 10.7 2.4 1 1 1 2 2 2 0 Mitotic checkpoint protein DUF1759 PF03564.15 gi|336254984|ref|YP_004598091.1| - 3.1 7.7 13.8 5.2 7.0 0.6 4.8 2 2 2 5 5 5 0 Protein of unknown function (DUF1759) DUF2203 PF09969.9 gi|336254984|ref|YP_004598091.1| - 3.5 8.4 45.7 0.26 12.0 2.0 5.8 4 2 2 6 6 5 0 Uncharacterized conserved protein (DUF2203) Baculo_PEP_C PF04513.12 gi|336254984|ref|YP_004598091.1| - 3.5 7.6 28.3 0.085 12.9 4.9 4.9 3 2 1 5 5 5 0 Baculovirus polyhedron envelope protein, PEP, C terminus STAT_alpha PF01017.20 gi|336254984|ref|YP_004598091.1| - 5.6 6.8 12.1 3.4 7.6 4.1 3.8 1 1 2 3 3 3 0 STAT protein, all-alpha domain NPV_P10 PF05531.12 gi|336254984|ref|YP_004598091.1| - 7.4 7.1 25.4 13 6.3 4.0 5.8 3 2 2 5 5 5 0 Nucleopolyhedrovirus P10 protein Mce4_CUP1 PF11887.8 gi|336254984|ref|YP_004598091.1| - 7.6 5.9 14.1 0.44 9.9 2.9 3.0 2 1 0 3 3 3 0 Cholesterol uptake porter CUP1 of Mce4, putative AIP3 PF03915.13 gi|336254984|ref|YP_004598091.1| - 8 5.4 37.5 1.8 7.6 8.0 3.3 1 1 2 3 3 3 0 Actin interacting protein 3 LMBR1 PF04791.16 gi|336254984|ref|YP_004598091.1| - 9.5 5.0 21.6 0.092 11.6 7.4 2.4 1 1 1 2 2 2 0 LMBR1-like membrane protein DHR10 PF18595.1 gi|336254985|ref|YP_004598092.1| - 0.014 15.4 0.7 0.014 15.4 0.7 1.8 2 0 0 2 2 2 0 Designed helical repeat protein 10 domain GPW_gp25 PF04965.14 gi|336254985|ref|YP_004598092.1| - 0.032 14.0 0.5 4.5 7.1 0.0 2.4 1 1 1 2 2 2 0 Gene 25-like lysozyme FUSC PF04632.12 gi|336254985|ref|YP_004598092.1| - 1.5 7.3 3.8 1.8 7.0 3.8 1.1 1 0 0 1 1 1 0 Fusaric acid resistance protein family Putative_PNPOx PF01243.20 gi|336254986|ref|YP_004598093.1| - 2.1e-17 63.1 0.0 2.6e-17 62.8 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_ox_2 PF12900.7 gi|336254986|ref|YP_004598093.1| - 2.8e-06 27.4 0.0 3.8e-06 26.9 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyrid_ox_like PF16242.5 gi|336254986|ref|YP_004598093.1| - 4.4e-05 23.1 0.0 4.8e-05 23.0 0.0 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase like Aldolase PF01081.19 gi|336254987|ref|YP_004598094.1| - 1.5e-44 151.8 2.0 1.8e-44 151.5 2.0 1.0 1 0 0 1 1 1 1 KDPG and KHG aldolase PEP_hydrolase PF09370.10 gi|336254987|ref|YP_004598094.1| - 0.01 15.1 0.8 0.056 12.6 0.1 2.1 1 1 1 2 2 2 0 Phosphoenolpyruvate hydrolase-like Ribul_P_3_epim PF00834.19 gi|336254987|ref|YP_004598094.1| - 5.8 6.2 6.5 2.8 7.3 0.4 3.0 1 1 0 2 2 2 0 Ribulose-phosphate 3 epimerase family PfkB PF00294.24 gi|336254988|ref|YP_004598095.1| - 1.5e-51 175.5 0.2 1.8e-51 175.2 0.2 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase MR_MLE_C PF13378.6 gi|336254989|ref|YP_004598096.1| - 2.9e-66 223.2 0.3 3.9e-66 222.8 0.3 1.2 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|336254989|ref|YP_004598096.1| - 1e-25 90.2 0.0 1.9e-25 89.4 0.0 1.4 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Glyco_hydro_4C PF11975.8 gi|336254990|ref|YP_004598097.1| - 1.1e-65 221.6 0.0 2.3e-65 220.6 0.0 1.5 2 0 0 2 2 2 1 Family 4 glycosyl hydrolase C-terminal domain Glyco_hydro_4 PF02056.16 gi|336254990|ref|YP_004598097.1| - 1.3e-63 213.8 0.0 2.2e-63 213.1 0.0 1.3 1 0 0 1 1 1 1 Family 4 glycosyl hydrolase Ldh_1_N PF00056.23 gi|336254990|ref|YP_004598097.1| - 0.051 13.7 0.1 6.8 6.8 0.0 2.6 3 0 0 3 3 3 0 lactate/malate dehydrogenase, NAD binding domain OTCace PF00185.24 gi|336254990|ref|YP_004598097.1| - 0.16 12.1 0.0 0.36 10.9 0.0 1.5 1 0 0 1 1 1 0 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Methyltrn_RNA_2 PF04013.12 gi|336254992|ref|YP_004598099.1| - 1.6e-54 184.6 0.0 1.8e-54 184.5 0.0 1.0 1 0 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase YdjM PF04307.14 gi|336254993|ref|YP_004598100.1| - 4.8e-13 48.8 4.1 5.6e-13 48.6 4.1 1.2 1 0 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase Prok-RING_1 PF14446.6 gi|336254994|ref|YP_004598101.1| - 1.6e-07 31.1 0.9 2.4e-07 30.6 0.9 1.2 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 zf-ribbon_3 PF13248.6 gi|336254994|ref|YP_004598101.1| - 5.5e-05 22.4 2.4 0.092 12.2 0.3 2.3 2 0 0 2 2 2 2 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|336254994|ref|YP_004598101.1| - 0.002 18.2 9.0 0.065 13.4 3.8 2.1 1 1 1 2 2 2 2 Zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|336254994|ref|YP_004598101.1| - 0.0025 17.5 2.2 0.4 10.5 0.2 2.2 2 0 0 2 2 2 2 zinc-ribbon domain Lar_restr_allev PF14354.6 gi|336254994|ref|YP_004598101.1| - 0.004 17.5 1.0 0.0055 17.0 1.0 1.3 1 0 0 1 1 1 1 Restriction alleviation protein Lar TF_Zn_Ribbon PF08271.12 gi|336254994|ref|YP_004598101.1| - 0.004 16.6 2.8 0.0057 16.1 2.8 1.2 1 0 0 1 1 1 1 TFIIB zinc-binding DZR PF12773.7 gi|336254994|ref|YP_004598101.1| - 0.0051 16.8 1.4 0.038 14.0 1.7 1.7 1 1 1 2 2 2 2 Double zinc ribbon Nudix_N_2 PF14803.6 gi|336254994|ref|YP_004598101.1| - 0.0078 16.1 2.6 0.044 13.7 2.6 2.0 1 1 1 2 2 2 1 Nudix N-terminal A2L_zn_ribbon PF08792.10 gi|336254994|ref|YP_004598101.1| - 0.011 15.4 1.6 0.041 13.6 1.6 1.8 1 1 0 1 1 1 0 A2L zinc ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|336254994|ref|YP_004598101.1| - 0.013 15.5 2.2 0.066 13.2 2.2 1.9 1 1 0 1 1 1 0 PhnA Zinc-Ribbon OrfB_Zn_ribbon PF07282.11 gi|336254994|ref|YP_004598101.1| - 0.013 15.4 0.2 0.018 14.9 0.2 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain UPF0547 PF10571.9 gi|336254994|ref|YP_004598101.1| - 0.026 14.6 3.3 0.86 9.7 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf_Rg PF17915.1 gi|336254994|ref|YP_004598101.1| - 0.028 13.8 1.6 0.04 13.3 1.6 1.4 1 1 0 1 1 1 0 Reverse gyrase zinc finger DNA_ligase_ZBD PF03119.16 gi|336254994|ref|YP_004598101.1| - 0.031 14.3 0.5 0.031 14.3 0.5 2.7 2 1 1 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain Zn_Tnp_IS1595 PF12760.7 gi|336254994|ref|YP_004598101.1| - 0.041 13.9 1.9 0.11 12.5 1.6 1.7 1 1 0 1 1 1 0 Transposase zinc-ribbon domain zinc_ribbon_9 PF14369.6 gi|336254994|ref|YP_004598101.1| - 0.052 13.8 0.5 4 7.8 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon zf-IS66 PF13005.7 gi|336254994|ref|YP_004598101.1| - 0.058 13.8 1.9 0.98 9.9 0.2 2.2 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 HypA PF01155.19 gi|336254994|ref|YP_004598101.1| - 0.061 13.3 0.3 0.067 13.2 0.3 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Auto_anti-p27 PF06677.12 gi|336254994|ref|YP_004598101.1| - 0.07 13.3 1.7 0.16 12.1 1.4 1.7 1 1 1 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-NADH-PPase PF09297.11 gi|336254994|ref|YP_004598101.1| - 0.072 12.8 3.1 3.4 7.4 0.3 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zf-C4_Topoisom PF01396.19 gi|336254994|ref|YP_004598101.1| - 0.12 12.2 2.1 0.23 11.3 0.1 2.0 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger FlhC PF05280.11 gi|336254994|ref|YP_004598101.1| - 0.2 11.4 0.1 0.24 11.1 0.1 1.1 1 0 0 1 1 1 0 Flagellar transcriptional activator (FlhC) DUF1272 PF06906.11 gi|336254994|ref|YP_004598101.1| - 0.27 11.3 0.3 0.27 11.3 0.3 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1272) DUF2752 PF10825.8 gi|336254994|ref|YP_004598101.1| - 0.39 10.8 1.8 3.7 7.7 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2752) zf-tcix PF14952.6 gi|336254994|ref|YP_004598101.1| - 0.83 9.3 4.8 4.2 7.1 0.4 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding YhfH PF14149.6 gi|336254994|ref|YP_004598101.1| - 3.1 7.9 5.9 9.1 6.4 0.5 2.2 1 1 1 2 2 2 0 YhfH-like protein PsbL PF02419.17 gi|336254995|ref|YP_004598102.1| - 0.14 12.2 2.2 0.3 11.1 2.2 1.5 1 0 0 1 1 1 0 PsbL protein Trypsin_2 PF13365.6 gi|336254997|ref|YP_004598104.1| - 1.5e-28 100.6 2.7 2.3e-28 100.0 2.7 1.3 1 0 0 1 1 1 1 Trypsin-like peptidase domain Trypsin PF00089.26 gi|336254997|ref|YP_004598104.1| - 1.7e-13 50.9 0.2 1.3e-12 48.0 0.2 1.9 1 1 0 1 1 1 1 Trypsin PDZ_2 PF13180.6 gi|336254997|ref|YP_004598104.1| - 1.3e-08 35.0 0.0 2.6e-08 34.0 0.0 1.5 1 0 0 1 1 1 1 PDZ domain PDZ PF00595.24 gi|336254997|ref|YP_004598104.1| - 0.00012 22.4 0.0 0.042 14.2 0.0 2.6 2 0 0 2 2 2 2 PDZ domain PDZ_6 PF17820.1 gi|336254997|ref|YP_004598104.1| - 0.0011 18.7 0.1 0.2 11.5 0.0 2.9 2 0 0 2 2 2 1 PDZ domain Peptidase_S32 PF05579.13 gi|336254997|ref|YP_004598104.1| - 0.027 13.7 0.8 0.91 8.6 0.2 2.1 2 0 0 2 2 2 0 Equine arteritis virus serine endopeptidase S32 Tricorn_PDZ PF14685.6 gi|336254997|ref|YP_004598104.1| - 0.088 12.8 0.0 0.63 10.0 0.0 2.3 2 0 0 2 2 2 0 Tricorn protease PDZ domain THUMP PF02926.17 gi|336254998|ref|YP_004598105.1| - 1e-08 35.4 0.0 5.5e-08 33.0 0.0 2.0 2 0 0 2 2 2 1 THUMP domain DnaJ_CXXCXGXG PF00684.19 gi|336254998|ref|YP_004598105.1| - 0.0016 18.7 2.1 0.0016 18.7 2.1 2.5 3 0 0 3 3 3 1 DnaJ central domain SpaA PF17802.1 gi|336254998|ref|YP_004598105.1| - 0.091 13.1 0.0 0.56 10.6 0.0 2.3 1 1 0 1 1 1 0 Prealbumin-like fold domain Anti-TRAP PF15777.5 gi|336254998|ref|YP_004598105.1| - 0.48 10.4 7.2 0.082 12.9 1.9 2.4 2 0 0 2 2 2 0 Tryptophan RNA-binding attenuator protein inhibitory protein Peptidase_S9 PF00326.21 gi|336254999|ref|YP_004598106.1| - 9.1e-48 162.5 0.0 1.3e-47 162.0 0.0 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family Peptidase_S15 PF02129.18 gi|336254999|ref|YP_004598106.1| - 1e-09 38.4 0.3 1e-05 25.3 0.5 2.3 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) DLH PF01738.18 gi|336254999|ref|YP_004598106.1| - 9.5e-09 35.1 0.0 1.7e-08 34.3 0.0 1.3 1 0 0 1 1 1 1 Dienelactone hydrolase family Hydrolase_4 PF12146.8 gi|336254999|ref|YP_004598106.1| - 2.4e-08 33.5 0.2 0.00027 20.3 0.0 2.2 2 0 0 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 gi|336254999|ref|YP_004598106.1| - 0.00012 21.8 0.4 0.45 10.1 0.0 2.3 2 0 0 2 2 2 2 alpha/beta hydrolase fold FSH1 PF03959.13 gi|336254999|ref|YP_004598106.1| - 0.00062 19.5 0.0 0.0011 18.7 0.0 1.3 1 0 0 1 1 1 1 Serine hydrolase (FSH1) Peptidase_S9_N PF02897.15 gi|336254999|ref|YP_004598106.1| - 0.0022 16.9 0.0 0.028 13.2 0.0 2.1 2 0 0 2 2 2 1 Prolyl oligopeptidase, N-terminal beta-propeller domain Gmad1 PF10647.9 gi|336254999|ref|YP_004598106.1| - 0.0023 17.7 10.3 0.45 10.2 1.4 4.2 3 2 0 3 3 3 2 Lipoprotein LpqB beta-propeller domain Esterase_phd PF10503.9 gi|336254999|ref|YP_004598106.1| - 0.0055 16.2 0.0 0.012 15.1 0.0 1.5 1 0 0 1 1 1 1 Esterase PHB depolymerase ANAPC4_WD40 PF12894.7 gi|336254999|ref|YP_004598106.1| - 0.15 12.3 0.0 28 5.1 0.0 3.8 4 1 0 4 4 4 0 Anaphase-promoting complex subunit 4 WD40 domain AF-4 PF05110.13 gi|336254999|ref|YP_004598106.1| - 8.3 4.3 14.1 11 3.9 14.1 1.1 1 0 0 1 1 1 0 AF-4 proto-oncoprotein RNase_HII PF01351.18 gi|336255000|ref|YP_004598107.1| - 2e-35 122.4 0.0 5.3e-35 121.1 0.0 1.6 1 1 0 1 1 1 1 Ribonuclease HII SecD_SecF PF02355.16 gi|336255001|ref|YP_004598108.1| - 3e-13 49.6 3.3 3e-13 49.6 3.3 1.7 2 0 0 2 2 2 1 Protein export membrane protein MMPL PF03176.15 gi|336255001|ref|YP_004598108.1| - 0.0055 15.7 11.2 0.012 14.6 11.2 1.4 1 0 0 1 1 1 1 MMPL family Sterol-sensing PF12349.8 gi|336255001|ref|YP_004598108.1| - 0.01 15.7 1.4 0.018 14.8 1.4 1.3 1 0 0 1 1 1 0 Sterol-sensing domain of SREBP cleavage-activation SecD_SecF PF02355.16 gi|336255002|ref|YP_004598109.1| - 4.9e-29 101.1 12.3 7.7e-29 100.4 12.3 1.3 1 0 0 1 1 1 1 Protein export membrane protein Sec_GG PF07549.14 gi|336255002|ref|YP_004598109.1| - 0.00022 20.6 0.0 0.00066 19.1 0.0 1.9 1 0 0 1 1 1 1 SecD/SecF GG Motif ACR_tran PF00873.19 gi|336255002|ref|YP_004598109.1| - 0.0027 15.5 7.7 0.0034 15.1 7.7 1.2 1 0 0 1 1 1 1 AcrB/AcrD/AcrF family Patched PF02460.18 gi|336255002|ref|YP_004598109.1| - 0.2 9.7 12.4 0.42 8.6 12.4 1.5 1 1 0 1 1 1 0 Patched family PGI PF00342.19 gi|336255005|ref|YP_004598112.1| - 3.4e-29 101.8 0.0 5.2e-25 88.0 0.0 2.1 2 0 0 2 2 2 2 Phosphoglucose isomerase CPBP PF02517.16 gi|336255006|ref|YP_004598113.1| - 8.9e-14 51.6 1.4 8.9e-14 51.6 1.4 3.0 3 1 0 3 3 3 1 CPBP intramembrane metalloprotease PIN_6 PF17146.4 gi|336255007|ref|YP_004598114.1| - 2.1e-13 50.6 0.1 6e-13 49.1 0.1 1.6 2 0 0 2 2 2 1 PIN domain of ribonuclease PIN_5 PF08745.11 gi|336255007|ref|YP_004598114.1| - 0.0021 17.5 0.8 0.0034 16.8 0.4 1.6 1 1 1 2 2 2 1 PINc domain ribonuclease Zn-ribbon_8 PF09723.10 gi|336255007|ref|YP_004598114.1| - 0.0022 18.1 3.0 0.006 16.7 3.0 1.7 1 0 0 1 1 1 1 Zinc ribbon domain DNA_ligase_ZBD PF03119.16 gi|336255007|ref|YP_004598114.1| - 0.0027 17.7 1.5 0.037 14.0 0.2 2.5 2 0 0 2 2 2 1 NAD-dependent DNA ligase C4 zinc finger domain HypA PF01155.19 gi|336255007|ref|YP_004598114.1| - 0.0051 16.8 1.9 0.0072 16.3 1.9 1.5 1 1 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-C3HC4_3 PF13920.6 gi|336255007|ref|YP_004598114.1| - 0.0054 16.6 1.3 0.008 16.0 1.3 1.2 1 0 0 1 1 1 1 Zinc finger, C3HC4 type (RING finger) DUF4411 PF14367.6 gi|336255007|ref|YP_004598114.1| - 0.0076 16.2 0.1 0.071 13.0 0.0 2.1 1 1 1 2 2 2 1 Domain of unknown function (DUF4411) zinc-ribbons_6 PF07191.12 gi|336255007|ref|YP_004598114.1| - 0.0077 16.2 0.7 0.012 15.5 0.7 1.3 1 0 0 1 1 1 1 zinc-ribbons Prok-RING_4 PF14447.6 gi|336255007|ref|YP_004598114.1| - 0.0093 15.8 0.5 0.036 13.9 1.1 1.6 2 0 0 2 2 2 1 Prokaryotic RING finger family 4 zf-C3HC4_2 PF13923.6 gi|336255007|ref|YP_004598114.1| - 0.012 15.4 2.2 0.021 14.6 2.2 1.4 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) DZR PF12773.7 gi|336255007|ref|YP_004598114.1| - 0.013 15.5 0.3 0.02 14.9 0.3 1.3 1 0 0 1 1 1 0 Double zinc ribbon DUF3663 PF12404.8 gi|336255007|ref|YP_004598114.1| - 0.017 15.1 0.0 0.047 13.7 0.0 1.8 1 0 0 1 1 1 0 Peptidase Rad50_zn_hook PF04423.14 gi|336255007|ref|YP_004598114.1| - 0.021 14.7 2.0 0.27 11.1 1.1 2.4 1 1 1 2 2 2 0 Rad50 zinc hook motif zinc_ribbon_15 PF17032.5 gi|336255007|ref|YP_004598114.1| - 0.024 15.4 0.1 0.035 14.9 0.1 1.3 1 0 0 1 1 1 0 zinc-ribbon family zf-RING_5 PF14634.6 gi|336255007|ref|YP_004598114.1| - 0.04 13.9 0.6 0.06 13.3 0.6 1.3 1 0 0 1 1 1 0 zinc-RING finger domain DUF2710 PF10921.8 gi|336255007|ref|YP_004598114.1| - 0.047 14.1 0.5 0.18 12.3 0.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2710) C1_2 PF03107.16 gi|336255007|ref|YP_004598114.1| - 0.048 14.0 0.1 0.093 13.1 0.1 1.5 1 0 0 1 1 1 0 C1 domain NOB1_Zn_bind PF08772.11 gi|336255007|ref|YP_004598114.1| - 0.054 13.6 0.4 0.11 12.7 0.4 1.5 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like Ribosomal_L37e PF01907.19 gi|336255007|ref|YP_004598114.1| - 0.057 13.6 0.6 0.092 12.9 0.6 1.3 1 0 0 1 1 1 0 Ribosomal protein L37e Prok-RING_1 PF14446.6 gi|336255007|ref|YP_004598114.1| - 0.11 12.4 3.2 0.24 11.3 3.2 1.5 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 Zn_ribbon_SprT PF17283.2 gi|336255007|ref|YP_004598114.1| - 0.21 11.5 3.8 3.1 7.8 3.8 2.2 1 1 0 1 1 1 0 SprT-like zinc ribbon domain zf-C2HC_2 PF13913.6 gi|336255007|ref|YP_004598114.1| - 0.31 11.0 0.4 0.31 11.0 0.4 2.3 2 0 0 2 2 2 0 zinc-finger of a C2HC-type PRC PF05239.16 gi|336255008|ref|YP_004598115.1| - 6.3e-11 42.2 0.1 7.6e-11 42.0 0.1 1.1 1 0 0 1 1 1 1 PRC-barrel domain RalF_SCD PF18248.1 gi|336255008|ref|YP_004598115.1| - 0.19 11.7 0.0 0.24 11.4 0.0 1.1 1 0 0 1 1 1 0 RalF C-terminal Sec-7 capping domain GTP_EFTU PF00009.27 gi|336255009|ref|YP_004598116.1| - 4.2e-31 108.0 0.0 3.9e-30 104.9 0.0 2.4 2 1 0 2 2 2 1 Elongation factor Tu GTP binding domain GTP_EFTU_D4 PF14578.6 gi|336255009|ref|YP_004598116.1| - 5.7e-25 87.0 2.6 1.3e-24 85.9 0.1 2.7 3 0 0 3 3 3 1 Elongation factor Tu domain 4 IF-2 PF11987.8 gi|336255009|ref|YP_004598116.1| - 3.2e-23 81.8 1.2 9.1e-23 80.4 0.5 2.2 2 0 0 2 2 2 1 Translation-initiation factor 2 GTP_EFTU_D2 PF03144.25 gi|336255009|ref|YP_004598116.1| - 6.6e-14 52.1 8.0 7.8e-10 39.0 0.1 3.1 3 0 0 3 3 3 2 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|336255009|ref|YP_004598116.1| - 2e-08 34.3 0.0 7.3e-08 32.5 0.0 2.0 1 0 0 1 1 1 1 50S ribosome-binding GTPase Dynamin_N PF00350.23 gi|336255009|ref|YP_004598116.1| - 0.0018 18.3 0.1 0.22 11.5 0.0 2.6 2 0 0 2 2 2 1 Dynamin family ATP_bind_1 PF03029.17 gi|336255009|ref|YP_004598116.1| - 0.009 15.8 0.0 0.034 13.9 0.0 2.0 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein Roc PF08477.13 gi|336255009|ref|YP_004598116.1| - 0.09 13.0 0.0 0.39 10.9 0.0 2.1 2 1 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase Delta_lysin PF05372.11 gi|336255009|ref|YP_004598116.1| - 0.25 10.7 0.9 0.91 8.9 0.9 2.0 1 0 0 1 1 1 0 Delta lysin family DUF4133 PF13571.6 gi|336255010|ref|YP_004598117.1| - 0.037 14.4 1.5 0.045 14.1 1.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4133) SPC12 PF06645.13 gi|336255010|ref|YP_004598117.1| - 0.068 13.3 0.6 0.088 12.9 0.6 1.2 1 0 0 1 1 1 0 Microsomal signal peptidase 12 kDa subunit (SPC12) DUF4191 PF13829.6 gi|336255010|ref|YP_004598117.1| - 0.61 9.4 2.3 0.63 9.3 2.3 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) Cyclophil_like PF04126.13 gi|336255011|ref|YP_004598118.1| - 5.4e-27 94.0 0.0 5.8e-27 93.9 0.0 1.0 1 0 0 1 1 1 1 Cyclophilin-like Cyclophil_like2 PF18050.1 gi|336255011|ref|YP_004598118.1| - 0.012 15.6 0.0 0.017 15.1 0.0 1.2 1 0 0 1 1 1 0 Cyclophilin-like family DUF3830 PF12903.7 gi|336255011|ref|YP_004598118.1| - 0.079 12.7 0.1 0.11 12.1 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3830) bPH_6 PF10756.9 gi|336255012|ref|YP_004598119.1| - 0.002 18.2 0.3 0.0063 16.6 0.3 1.9 1 0 0 1 1 1 1 Bacterial PH domain CTP_synth_N PF06418.14 gi|336255014|ref|YP_004598121.1| - 1.4e-125 417.9 0.2 1.8e-125 417.6 0.2 1.1 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.28 gi|336255014|ref|YP_004598121.1| - 3.2e-54 183.6 0.0 5.5e-54 182.8 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|336255014|ref|YP_004598121.1| - 3.3e-07 30.3 0.0 7.8e-06 25.8 0.0 2.3 1 1 0 1 1 1 1 Peptidase C26 CbiA PF01656.23 gi|336255014|ref|YP_004598121.1| - 0.0019 18.2 0.0 0.0032 17.5 0.0 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain GATase_3 PF07685.14 gi|336255014|ref|YP_004598121.1| - 0.067 12.8 0.0 0.13 11.9 0.0 1.4 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain GMP_synt_C PF00958.22 gi|336255015|ref|YP_004598122.1| - 7.8e-29 99.6 0.4 5.8e-28 96.8 0.2 2.1 2 0 0 2 2 2 1 GMP synthase C terminal domain NAD_synthase PF02540.17 gi|336255015|ref|YP_004598122.1| - 1.5e-08 34.1 0.0 3.8e-05 22.9 0.0 2.2 2 0 0 2 2 2 2 NAD synthase tRNA_Me_trans PF03054.16 gi|336255015|ref|YP_004598122.1| - 3e-05 23.0 0.0 0.0017 17.2 0.0 2.2 2 0 0 2 2 2 2 tRNA methyl transferase PAPS_reduct PF01507.19 gi|336255015|ref|YP_004598122.1| - 0.0036 17.4 0.0 0.0066 16.5 0.0 1.5 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family QueC PF06508.13 gi|336255015|ref|YP_004598122.1| - 0.011 15.3 0.0 0.034 13.7 0.0 1.8 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC ThiI PF02568.14 gi|336255015|ref|YP_004598122.1| - 0.021 14.4 0.0 0.14 11.8 0.0 2.1 1 1 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) Asn_synthase PF00733.21 gi|336255015|ref|YP_004598122.1| - 0.029 14.1 0.0 0.051 13.2 0.0 1.5 1 0 0 1 1 1 0 Asparagine synthase 5-FTHF_cyc-lig PF01812.20 gi|336255017|ref|YP_004598124.1| - 2.2e-29 102.7 0.0 2.6e-29 102.4 0.0 1.1 1 0 0 1 1 1 1 5-formyltetrahydrofolate cyclo-ligase family MoCF_biosynth PF00994.24 gi|336255018|ref|YP_004598125.1| - 4.7e-22 78.2 0.3 6.5e-22 77.7 0.3 1.2 1 0 0 1 1 1 1 Probable molybdopterin binding domain ADH_zinc_N PF00107.26 gi|336255019|ref|YP_004598126.1| - 1.5e-34 118.7 0.0 3e-34 117.8 0.0 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.12 gi|336255019|ref|YP_004598126.1| - 1.2e-26 92.7 0.1 2.1e-26 91.9 0.1 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N_2 PF13602.6 gi|336255019|ref|YP_004598126.1| - 4.3e-21 76.4 0.0 7.1e-21 75.7 0.0 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase AlaDh_PNT_C PF01262.21 gi|336255019|ref|YP_004598126.1| - 0.0084 15.4 0.3 0.0084 15.4 0.3 1.6 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain Semialdhyde_dh PF01118.24 gi|336255019|ref|YP_004598126.1| - 0.0087 16.5 0.1 0.017 15.5 0.1 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain adh_short PF00106.25 gi|336255019|ref|YP_004598126.1| - 0.021 14.3 0.3 0.037 13.5 0.3 1.5 1 1 0 1 1 1 0 short chain dehydrogenase NADH_4Fe-4S PF10589.9 gi|336255019|ref|YP_004598126.1| - 0.2 11.7 0.5 0.38 10.9 0.5 1.4 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region NUDIX PF00293.28 gi|336255021|ref|YP_004598128.1| - 3.8e-16 59.3 0.7 5.1e-16 58.9 0.7 1.2 1 0 0 1 1 1 1 NUDIX domain DAGK_cat PF00781.24 gi|336255022|ref|YP_004598129.1| - 1.9e-22 79.2 0.7 4.5e-22 78.0 0.6 1.7 2 0 0 2 2 2 1 Diacylglycerol kinase catalytic domain PHP_C PF13263.6 gi|336255023|ref|YP_004598130.1| - 7.3e-18 64.1 0.4 2.3e-17 62.5 0.0 2.1 2 0 0 2 2 2 1 PHP-associated RraA-like PF03737.15 gi|336255023|ref|YP_004598130.1| - 0.088 13.0 0.0 3 8.0 0.0 2.4 2 1 1 3 3 3 0 Aldolase/RraA HTH_AsnC-type PF13404.6 gi|336255024|ref|YP_004598131.1| - 1.3e-19 69.7 2.1 1.2e-17 63.4 1.1 2.3 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|336255024|ref|YP_004598131.1| - 7.9e-16 57.4 0.1 5.8e-15 54.6 0.1 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.21 gi|336255024|ref|YP_004598131.1| - 4.9e-11 42.4 0.6 4.9e-11 42.4 0.6 1.6 2 0 0 2 2 2 1 Lrp/AsnC ligand binding domain Sigma70_r4_2 PF08281.12 gi|336255024|ref|YP_004598131.1| - 4.1e-05 23.2 0.0 0.00011 21.8 0.0 1.7 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4 PF04545.16 gi|336255024|ref|YP_004598131.1| - 0.00027 20.4 0.0 0.00051 19.5 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_20 PF12840.7 gi|336255024|ref|YP_004598131.1| - 0.0004 20.4 0.0 0.00073 19.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|336255024|ref|YP_004598131.1| - 0.0043 17.0 0.1 0.011 15.6 0.0 1.7 1 1 0 1 1 1 1 HTH domain NapD PF03927.13 gi|336255024|ref|YP_004598131.1| - 0.0044 17.0 0.5 0.0098 15.9 0.5 1.5 1 0 0 1 1 1 1 NapD protein HTH_IclR PF09339.10 gi|336255024|ref|YP_004598131.1| - 0.0051 16.6 0.0 0.0081 15.9 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|336255024|ref|YP_004598131.1| - 0.0054 16.1 0.1 0.012 15.0 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 GerE PF00196.19 gi|336255024|ref|YP_004598131.1| - 0.0066 16.0 0.0 0.026 14.1 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory proteins, luxR family MarR_2 PF12802.7 gi|336255024|ref|YP_004598131.1| - 0.0067 16.3 0.0 0.012 15.5 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_23 PF13384.6 gi|336255024|ref|YP_004598131.1| - 0.015 15.1 0.1 0.026 14.3 0.1 1.5 1 0 0 1 1 1 0 Homeodomain-like domain HTH_38 PF13936.6 gi|336255024|ref|YP_004598131.1| - 0.022 14.5 0.1 0.033 14.0 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HrcA_DNA-bdg PF03444.15 gi|336255024|ref|YP_004598131.1| - 0.022 14.4 0.0 0.048 13.3 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_DeoR PF08220.12 gi|336255024|ref|YP_004598131.1| - 0.023 14.4 0.2 0.12 12.1 0.1 2.1 1 1 1 2 2 2 0 DeoR-like helix-turn-helix domain GYD PF08734.11 gi|336255024|ref|YP_004598131.1| - 0.025 14.5 1.1 0.093 12.7 0.3 2.1 1 1 0 2 2 2 0 GYD domain MarR PF01047.22 gi|336255024|ref|YP_004598131.1| - 0.027 14.4 0.0 0.044 13.7 0.0 1.3 1 0 0 1 1 1 0 MarR family DUF746 PF05344.11 gi|336255024|ref|YP_004598131.1| - 0.054 13.3 0.1 0.37 10.6 0.0 2.1 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) HTH_Mga PF08280.11 gi|336255024|ref|YP_004598131.1| - 0.084 12.9 0.0 0.13 12.3 0.0 1.3 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain CPSase_sm_chain PF00988.22 gi|336255025|ref|YP_004598132.1| - 8.3e-36 122.6 0.1 1.6e-34 118.5 0.0 2.4 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.28 gi|336255025|ref|YP_004598132.1| - 9.9e-36 123.3 0.0 1.8e-35 122.4 0.0 1.4 2 0 0 2 2 2 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|336255025|ref|YP_004598132.1| - 1.3e-06 28.3 0.2 0.0024 17.7 0.0 2.2 1 1 1 2 2 2 2 Peptidase C26 DJ-1_PfpI PF01965.24 gi|336255025|ref|YP_004598132.1| - 5.5e-06 26.3 0.1 9.2e-06 25.6 0.1 1.5 1 0 0 1 1 1 1 DJ-1/PfpI family DUF5518 PF17647.1 gi|336255026|ref|YP_004598133.1| - 7.4e-22 77.7 13.8 8.5e-22 77.5 13.8 1.0 1 0 0 1 1 1 1 Family of unknown function (DUF5518) Pyr_redox_2 PF07992.14 gi|336255027|ref|YP_004598134.1| - 6.1e-07 29.0 0.5 2.6e-05 23.6 0.1 2.2 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|336255027|ref|YP_004598134.1| - 8.5e-06 25.2 2.2 0.00079 18.8 0.2 2.5 2 1 1 3 3 3 2 FAD binding domain FAD_oxidored PF12831.7 gi|336255027|ref|YP_004598134.1| - 0.00018 21.0 1.2 0.0014 18.1 0.8 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase GIDA PF01134.22 gi|336255027|ref|YP_004598134.1| - 0.00027 20.2 0.8 0.00036 19.7 0.1 1.5 2 0 0 2 2 2 1 Glucose inhibited division protein A FAD_binding_2 PF00890.24 gi|336255027|ref|YP_004598134.1| - 0.00052 19.2 3.5 0.0017 17.6 0.4 2.4 2 1 0 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.6 gi|336255027|ref|YP_004598134.1| - 0.00065 19.9 0.0 0.0016 18.6 0.0 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|336255027|ref|YP_004598134.1| - 0.0021 16.9 0.1 0.006 15.3 0.1 1.7 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_3 PF13738.6 gi|336255027|ref|YP_004598134.1| - 0.0023 17.3 0.1 0.044 13.0 0.0 2.4 2 1 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|336255027|ref|YP_004598134.1| - 0.0048 16.0 0.2 0.11 11.5 0.2 2.1 2 0 0 2 2 2 1 Lycopene cyclase protein Pyr_redox PF00070.27 gi|336255027|ref|YP_004598134.1| - 0.019 15.5 0.0 0.05 14.2 0.0 1.7 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|336255027|ref|YP_004598134.1| - 0.023 14.0 0.0 0.035 13.4 0.0 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain NUDIX PF00293.28 gi|336255027|ref|YP_004598134.1| - 0.054 13.5 0.7 0.098 12.7 0.7 1.4 1 0 0 1 1 1 0 NUDIX domain Trp_halogenase PF04820.14 gi|336255027|ref|YP_004598134.1| - 0.09 11.6 2.0 0.34 9.7 0.0 2.2 2 0 0 2 2 2 0 Tryptophan halogenase DAO PF01266.24 gi|336255027|ref|YP_004598134.1| - 0.13 11.8 10.5 0.1 12.2 0.5 3.3 2 1 1 4 4 4 0 FAD dependent oxidoreductase ACAS_N PF16177.5 gi|336255027|ref|YP_004598134.1| - 0.22 11.4 0.9 0.4 10.6 0.9 1.4 1 0 0 1 1 1 0 Acetyl-coenzyme A synthetase N-terminus Peripla_BP_2 PF01497.18 gi|336255028|ref|YP_004598135.1| - 4.3e-20 72.3 0.0 5.9e-20 71.9 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein TAT_signal PF10518.9 gi|336255028|ref|YP_004598135.1| - 0.012 15.4 1.2 0.024 14.5 1.2 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence SIMPL PF04402.14 gi|336255029|ref|YP_004598136.1| - 3.4e-37 128.8 4.1 4.3e-37 128.5 4.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF541) TAT_signal PF10518.9 gi|336255029|ref|YP_004598136.1| - 0.00048 19.9 4.5 0.0012 18.6 4.5 1.6 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence OsmC PF02566.19 gi|336255029|ref|YP_004598136.1| - 0.063 13.8 2.1 0.45 11.0 0.1 2.4 2 1 0 2 2 2 0 OsmC-like protein PALP PF00291.25 gi|336255030|ref|YP_004598137.1| - 1.3e-56 192.1 6.3 1.5e-56 191.9 6.3 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme AICARFT_IMPCHas PF01808.18 gi|336255031|ref|YP_004598138.1| - 3.4e-86 289.3 0.0 4.5e-86 289.0 0.0 1.1 1 0 0 1 1 1 1 AICARFT/IMPCHase bienzyme Formyl_trans_N PF00551.19 gi|336255031|ref|YP_004598138.1| - 1.5e-35 122.5 0.0 2.9e-34 118.4 0.0 2.4 1 1 0 1 1 1 1 Formyl transferase CoA_binding_2 PF13380.6 gi|336255031|ref|YP_004598138.1| - 0.0087 16.5 0.2 1.4 9.4 0.0 3.1 3 0 0 3 3 3 1 CoA binding domain Toxin_25 PF08095.11 gi|336255031|ref|YP_004598138.1| - 0.14 12.1 0.2 0.36 10.8 0.2 1.7 1 0 0 1 1 1 0 Hefutoxin family Lyase_1 PF00206.20 gi|336255032|ref|YP_004598139.1| - 3.2e-51 174.6 0.0 4.2e-51 174.2 0.0 1.1 1 0 0 1 1 1 1 Lyase ASL_C PF08328.11 gi|336255032|ref|YP_004598139.1| - 6.2e-42 142.3 0.0 1.1e-41 141.6 0.0 1.4 1 0 0 1 1 1 1 Adenylosuccinate lyase C-terminal DUF3944 PF13099.6 gi|336255032|ref|YP_004598139.1| - 0.2 11.6 1.5 25 4.9 0.0 2.9 2 0 0 2 2 2 0 Domain of unknown function (DUF3944) EamA PF00892.20 gi|336255033|ref|YP_004598140.1| - 4.2e-10 39.9 15.4 4.6e-10 39.8 15.4 1.0 1 0 0 1 1 1 1 EamA-like transporter family Sugar_transport PF06800.12 gi|336255033|ref|YP_004598140.1| - 0.0045 16.4 2.7 0.0056 16.0 2.5 1.4 1 1 0 1 1 1 1 Sugar transport protein Mg_trans_NIPA PF05653.14 gi|336255033|ref|YP_004598140.1| - 0.058 12.5 3.2 0.069 12.3 2.6 1.3 1 1 0 1 1 1 0 Magnesium transporter NIPA Chloroplast_duf PF14476.6 gi|336255033|ref|YP_004598140.1| - 5.1 6.0 5.1 2 7.3 0.4 1.9 2 0 0 2 2 2 0 Petal formation-expressed EamA PF00892.20 gi|336255034|ref|YP_004598141.1| - 3.2e-08 33.8 13.5 5.2e-08 33.1 13.5 1.3 1 1 0 1 1 1 1 EamA-like transporter family Sugar_transport PF06800.12 gi|336255034|ref|YP_004598141.1| - 0.00087 18.7 4.1 0.0011 18.4 4.1 1.1 1 0 0 1 1 1 1 Sugar transport protein Multi_Drug_Res PF00893.19 gi|336255034|ref|YP_004598141.1| - 0.23 12.1 9.3 0.51 11.0 3.1 2.2 1 1 1 2 2 2 0 Small Multidrug Resistance protein 7TMR-DISM_7TM PF07695.11 gi|336255034|ref|YP_004598141.1| - 1 9.2 14.6 2.7 7.8 3.3 2.0 1 1 1 2 2 2 0 7TM diverse intracellular signalling Peptidase_M20 PF01546.28 gi|336255035|ref|YP_004598142.1| - 1.4e-24 86.9 0.0 4.1e-24 85.5 0.0 1.8 2 1 0 2 2 2 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|336255035|ref|YP_004598142.1| - 8.9e-18 64.2 0.0 1.6e-17 63.4 0.0 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain Orn_Arg_deC_N PF02784.16 gi|336255036|ref|YP_004598143.1| - 4.3e-41 140.9 0.0 5.3e-41 140.6 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.22 gi|336255036|ref|YP_004598143.1| - 9.1e-21 73.9 0.0 1e-20 73.7 0.0 1.3 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Ala_racemase_N PF01168.20 gi|336255036|ref|YP_004598143.1| - 2.1e-07 30.8 0.0 3.4e-07 30.1 0.0 1.4 1 0 0 1 1 1 1 Alanine racemase, N-terminal domain THDPS_N_2 PF14805.6 gi|336255038|ref|YP_004598145.1| - 1.5e-24 86.0 1.5 2.4e-24 85.3 1.5 1.3 1 0 0 1 1 1 1 Tetrahydrodipicolinate N-succinyltransferase N-terminal Hexapep PF00132.24 gi|336255038|ref|YP_004598145.1| - 2e-12 46.3 5.8 6e-05 22.6 0.4 3.4 3 0 0 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|336255038|ref|YP_004598145.1| - 4.5e-07 29.5 11.0 4e-06 26.5 1.0 3.2 3 1 0 3 3 3 2 Hexapeptide repeat of succinyl-transferase DapB_C PF05173.14 gi|336255039|ref|YP_004598146.1| - 1.2e-36 125.4 0.0 1.6e-36 124.9 0.0 1.2 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, C-terminus DapB_N PF01113.20 gi|336255039|ref|YP_004598146.1| - 2.5e-30 105.1 0.0 7.5e-30 103.6 0.0 1.7 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus Sacchrp_dh_NADP PF03435.18 gi|336255039|ref|YP_004598146.1| - 1.9e-06 28.1 0.3 1.6e-05 25.2 0.1 2.5 2 1 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain NAD_binding_3 PF03447.16 gi|336255039|ref|YP_004598146.1| - 5e-05 23.9 0.1 9.8e-05 23.0 0.1 1.4 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|336255039|ref|YP_004598146.1| - 0.00048 20.9 0.0 0.00086 20.1 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold Semialdhyde_dh PF01118.24 gi|336255039|ref|YP_004598146.1| - 0.00086 19.7 0.0 0.0014 19.1 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Epimerase PF01370.21 gi|336255039|ref|YP_004598146.1| - 0.00089 18.8 0.1 0.0033 16.9 0.0 1.9 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family CoA_binding PF02629.19 gi|336255039|ref|YP_004598146.1| - 0.0011 19.7 0.1 0.0025 18.4 0.1 1.6 1 0 0 1 1 1 1 CoA binding domain CoA_binding_2 PF13380.6 gi|336255039|ref|YP_004598146.1| - 0.0025 18.3 0.1 0.0045 17.5 0.1 1.5 1 0 0 1 1 1 1 CoA binding domain RmlD_sub_bind PF04321.17 gi|336255039|ref|YP_004598146.1| - 0.0036 16.5 0.0 0.0074 15.4 0.0 1.4 1 1 0 1 1 1 1 RmlD substrate binding domain NmrA PF05368.13 gi|336255039|ref|YP_004598146.1| - 0.004 16.7 0.0 0.0085 15.7 0.0 1.6 1 0 0 1 1 1 1 NmrA-like family ADH_zinc_N PF00107.26 gi|336255039|ref|YP_004598146.1| - 0.0083 16.1 0.2 0.015 15.3 0.2 1.6 1 0 0 1 1 1 1 Zinc-binding dehydrogenase NAD_binding_10 PF13460.6 gi|336255039|ref|YP_004598146.1| - 0.022 14.7 0.9 0.044 13.7 0.3 1.9 1 1 1 2 2 2 0 NAD(P)H-binding Gp_dh_N PF00044.24 gi|336255039|ref|YP_004598146.1| - 0.14 12.5 0.4 0.46 10.8 0.0 2.0 2 0 0 2 2 2 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DHDPS PF00701.22 gi|336255040|ref|YP_004598147.1| - 1.1e-93 313.2 0.0 1.2e-93 313.0 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family ThiG PF05690.14 gi|336255040|ref|YP_004598147.1| - 0.019 14.3 0.0 0.031 13.6 0.0 1.2 1 0 0 1 1 1 0 Thiazole biosynthesis protein ThiG Peptidase_M48 PF01435.18 gi|336255041|ref|YP_004598148.1| - 2.8e-37 128.4 0.0 3.4e-37 128.1 0.0 1.1 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|336255041|ref|YP_004598148.1| - 2.2e-07 30.4 0.1 2.1e-06 27.2 0.0 2.1 2 0 0 2 2 2 1 BlaR1 peptidase M56 MFS_2 PF13347.6 gi|336255041|ref|YP_004598148.1| - 0.0028 16.3 0.1 0.0028 16.3 0.1 2.0 2 0 0 2 2 2 1 MFS/sugar transport protein SprT-like PF10263.9 gi|336255041|ref|YP_004598148.1| - 0.012 15.5 0.0 0.017 14.9 0.0 1.2 1 0 0 1 1 1 0 SprT-like family DUF2207 PF09972.9 gi|336255041|ref|YP_004598148.1| - 0.23 10.2 3.9 2 7.1 0.2 2.0 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) RhodobacterPufX PF11511.8 gi|336255041|ref|YP_004598148.1| - 0.25 11.0 5.6 1.3 8.6 1.8 2.6 2 0 0 2 2 2 0 Intrinsic membrane protein PufX Orai-1 PF07856.12 gi|336255041|ref|YP_004598148.1| - 0.35 10.5 5.5 1.3 8.7 0.6 2.2 2 0 0 2 2 2 0 Mediator of CRAC channel activity LptF_LptG PF03739.14 gi|336255041|ref|YP_004598148.1| - 3.4 6.4 7.0 3.6 6.3 2.6 2.1 2 0 0 2 2 2 0 Lipopolysaccharide export system permease LptF/LptG NYN PF01936.18 gi|336255042|ref|YP_004598149.1| - 1e-38 133.1 0.3 1.2e-38 132.9 0.3 1.0 1 0 0 1 1 1 1 NYN domain TGT_C2 PF14810.6 gi|336255044|ref|YP_004598151.1| - 1.6e-25 89.0 0.1 3.3e-25 88.0 0.1 1.5 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.20 gi|336255044|ref|YP_004598151.1| - 1.2e-18 66.8 0.3 1.9e-18 66.2 0.3 1.3 1 0 0 1 1 1 1 PUA domain UPF0113 PF03657.13 gi|336255044|ref|YP_004598151.1| - 0.012 15.9 0.0 0.021 15.1 0.0 1.5 1 1 0 1 1 1 0 UPF0113 PUA domain DUF1700 PF08006.11 gi|336255045|ref|YP_004598152.1| - 0.37 10.3 2.4 0.42 10.1 2.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1700) NAC PF01849.18 gi|336255046|ref|YP_004598153.1| - 1.2e-16 60.4 0.1 1.7e-16 59.9 0.1 1.2 1 0 0 1 1 1 1 NAC domain UBA_4 PF14555.6 gi|336255046|ref|YP_004598153.1| - 0.0034 17.2 0.6 0.0077 16.0 0.6 1.5 1 0 0 1 1 1 1 UBA-like domain CUE PF02845.16 gi|336255046|ref|YP_004598153.1| - 0.02 14.6 0.1 0.02 14.6 0.1 2.0 2 0 0 2 2 2 0 CUE domain TFIID_30kDa PF03540.13 gi|336255046|ref|YP_004598153.1| - 0.093 12.7 0.0 1 9.3 0.0 2.3 2 1 0 2 2 2 0 Transcription initiation factor TFIID 23-30kDa subunit LptC PF06835.13 gi|336255046|ref|YP_004598153.1| - 0.19 11.3 0.0 0.43 10.1 0.0 1.5 2 0 0 2 2 2 0 Lipopolysaccharide-assembly, LptC-related GCD14 PF08704.10 gi|336255047|ref|YP_004598154.1| - 6.6e-18 65.3 0.1 2e-14 53.9 0.0 2.1 1 1 1 2 2 2 2 tRNA methyltransferase complex GCD14 subunit Methyltransf_31 PF13847.6 gi|336255047|ref|YP_004598154.1| - 3.2e-09 36.8 0.0 4.1e-09 36.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|336255047|ref|YP_004598154.1| - 1.9e-08 34.9 0.6 3.9e-08 33.9 0.6 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|336255047|ref|YP_004598154.1| - 1.4e-07 32.0 0.4 2.5e-07 31.2 0.4 1.5 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|336255047|ref|YP_004598154.1| - 2.3e-07 30.5 0.5 2.9e-07 30.2 0.5 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_24 PF13578.6 gi|336255047|ref|YP_004598154.1| - 1.8e-06 28.9 0.4 4e-06 27.8 0.4 1.6 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|336255047|ref|YP_004598154.1| - 2.1e-06 27.4 0.2 4.9e-06 26.2 0.2 1.6 1 1 0 1 1 1 1 Methyltransferase small domain PCMT PF01135.19 gi|336255047|ref|YP_004598154.1| - 3.2e-05 23.8 0.1 4.1e-05 23.4 0.1 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_23 PF13489.6 gi|336255047|ref|YP_004598154.1| - 7e-05 22.7 0.0 0.00013 21.9 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_3 PF01596.17 gi|336255047|ref|YP_004598154.1| - 0.00015 21.0 0.0 0.00019 20.7 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase RrnaAD PF00398.20 gi|336255047|ref|YP_004598154.1| - 0.00034 19.8 0.0 0.00045 19.4 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Cons_hypoth95 PF03602.15 gi|336255047|ref|YP_004598154.1| - 0.00067 19.3 0.0 0.00089 18.9 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_12 PF08242.12 gi|336255047|ref|YP_004598154.1| - 0.0014 19.3 0.2 0.0029 18.3 0.2 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|336255047|ref|YP_004598154.1| - 0.0023 17.5 0.0 0.0032 17.0 0.0 1.1 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase ADH_zinc_N PF00107.26 gi|336255047|ref|YP_004598154.1| - 0.005 16.8 0.5 0.0071 16.3 0.5 1.2 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|336255047|ref|YP_004598154.1| - 0.0052 17.8 1.2 0.02 16.0 0.2 2.0 2 0 0 2 2 2 1 Zinc-binding dehydrogenase MetW PF07021.12 gi|336255047|ref|YP_004598154.1| - 0.0097 15.5 0.2 0.015 14.9 0.2 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Met_10 PF02475.16 gi|336255047|ref|YP_004598154.1| - 0.014 15.2 0.0 0.02 14.7 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein CMAS PF02353.20 gi|336255047|ref|YP_004598154.1| - 0.02 14.2 0.0 0.025 13.9 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_18 PF12847.7 gi|336255047|ref|YP_004598154.1| - 0.025 14.5 0.1 0.041 13.8 0.1 1.3 1 0 0 1 1 1 0 Methyltransferase domain TFIIS_C PF01096.18 gi|336255048|ref|YP_004598155.1| - 2.8e-19 68.7 5.0 2.8e-19 68.7 5.0 3.0 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.16 gi|336255048|ref|YP_004598155.1| - 1.9e-08 34.0 1.3 1.9e-08 34.0 1.3 3.1 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit Zn_Tnp_IS1595 PF12760.7 gi|336255048|ref|YP_004598155.1| - 2.8e-06 27.2 4.3 0.0015 18.4 0.3 2.4 2 0 0 2 2 2 2 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|336255048|ref|YP_004598155.1| - 2.2e-05 23.8 7.2 0.001 18.6 0.3 3.5 3 1 0 3 3 3 1 TFIIB zinc-binding DZR PF12773.7 gi|336255048|ref|YP_004598155.1| - 0.00019 21.4 9.3 0.011 15.8 0.5 2.8 2 1 0 2 2 2 2 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|336255048|ref|YP_004598155.1| - 0.00034 19.9 10.3 0.16 11.5 2.6 3.3 3 1 0 3 3 3 2 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|336255048|ref|YP_004598155.1| - 0.00049 20.0 10.6 0.027 14.4 0.8 2.6 2 1 0 2 2 2 2 Putative transposase DNA-binding domain PhnA_Zn_Ribbon PF08274.12 gi|336255048|ref|YP_004598155.1| - 0.00091 19.1 1.2 0.00091 19.1 1.2 3.2 3 0 0 3 3 3 1 PhnA Zinc-Ribbon FdhE PF04216.12 gi|336255048|ref|YP_004598155.1| - 0.0034 17.3 1.5 0.0049 16.8 0.1 1.8 2 0 0 2 2 2 1 Protein involved in formate dehydrogenase formation DUF3797 PF12677.7 gi|336255048|ref|YP_004598155.1| - 0.063 13.2 0.2 0.063 13.2 0.2 2.6 2 2 1 3 3 3 0 Domain of unknown function (DUF3797) Ribosomal_L37ae PF01780.19 gi|336255048|ref|YP_004598155.1| - 0.066 13.3 0.3 0.066 13.3 0.3 2.6 1 1 1 2 2 2 0 Ribosomal L37ae protein family HalOD2 PF18547.1 gi|336255048|ref|YP_004598155.1| - 0.091 12.7 12.3 0.18 11.7 0.2 3.9 3 1 1 4 4 4 0 Halobacterial output domain 2 ArfGap PF01412.18 gi|336255048|ref|YP_004598155.1| - 0.1 12.7 0.3 0.1 12.7 0.3 2.1 2 1 0 2 2 2 0 Putative GTPase activating protein for Arf Nudix_N_2 PF14803.6 gi|336255048|ref|YP_004598155.1| - 0.1 12.5 12.4 2.3 8.2 3.0 3.8 3 1 0 3 3 3 0 Nudix N-terminal DUF3268 PF11672.8 gi|336255048|ref|YP_004598155.1| - 0.12 12.7 0.6 0.12 12.7 0.6 2.1 2 1 0 2 2 2 0 zinc-finger-containing domain TackOD1 PF18551.1 gi|336255048|ref|YP_004598155.1| - 0.14 11.8 6.3 2.5 7.8 6.3 2.5 1 1 0 1 1 1 0 Thaumarchaeal output domain 1 zf-UBP PF02148.19 gi|336255048|ref|YP_004598155.1| - 0.18 12.2 4.6 1.8 8.9 0.3 2.4 2 1 0 2 2 2 0 Zn-finger in ubiquitin-hydrolases and other protein zf-RRN7 PF11781.8 gi|336255048|ref|YP_004598155.1| - 0.22 11.2 12.8 8.9 6.1 0.1 4.1 3 1 0 3 3 3 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 DUF2387 PF09526.10 gi|336255048|ref|YP_004598155.1| - 0.26 11.5 7.6 3.9 7.7 2.6 2.4 2 0 0 2 2 2 0 Probable metal-binding protein (DUF2387) zinc-ribbons_6 PF07191.12 gi|336255048|ref|YP_004598155.1| - 0.31 11.0 9.2 2.9 8.0 0.4 2.7 2 1 0 2 2 2 0 zinc-ribbons zf-IS66 PF13005.7 gi|336255048|ref|YP_004598155.1| - 0.43 11.0 6.9 9.2 6.8 0.0 3.9 4 0 0 4 4 4 0 zinc-finger binding domain of transposase IS66 HypA PF01155.19 gi|336255048|ref|YP_004598155.1| - 0.49 10.4 10.1 94 3.1 0.3 3.0 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|336255048|ref|YP_004598155.1| - 0.61 10.3 12.1 1.1 9.5 0.2 3.9 3 1 0 3 3 3 0 Zinc ribbon domain zf-RRPl_C4 PF17026.5 gi|336255048|ref|YP_004598155.1| - 0.65 10.1 4.9 3.3 7.8 4.9 1.9 1 1 0 1 1 1 0 Putative ribonucleoprotein zinc-finger pf C4 type zinc_ribbon_2 PF13240.6 gi|336255048|ref|YP_004598155.1| - 0.74 9.6 15.4 0.79 9.5 0.2 3.9 3 1 0 4 4 4 0 zinc-ribbon domain zf-ACC PF17848.1 gi|336255048|ref|YP_004598155.1| - 1.3 9.2 15.2 4.2 7.5 0.3 4.1 4 0 0 4 4 4 0 Acetyl-coA carboxylase zinc finger domain Prok-RING_1 PF14446.6 gi|336255048|ref|YP_004598155.1| - 1.4 8.9 8.8 1.5 8.8 0.7 3.0 3 0 0 3 3 3 0 Prokaryotic RING finger family 1 zf-RING_7 PF02591.15 gi|336255048|ref|YP_004598155.1| - 2.1 8.6 13.9 5.7 7.2 1.1 4.0 4 1 0 4 4 4 0 C4-type zinc ribbon domain Rubredoxin_2 PF18073.1 gi|336255048|ref|YP_004598155.1| - 2.4 8.0 17.6 6.8 6.5 1.7 4.0 3 1 1 4 4 4 0 Rubredoxin metal binding domain A2L_zn_ribbon PF08792.10 gi|336255048|ref|YP_004598155.1| - 2.4 7.9 12.9 28 4.6 0.7 4.1 3 1 1 4 4 4 0 A2L zinc ribbon domain Ribosomal_S27 PF01599.19 gi|336255048|ref|YP_004598155.1| - 2.5 8.4 7.3 5.1 7.3 3.0 2.5 2 0 0 2 2 2 0 Ribosomal protein S27a zf_UBZ PF18439.1 gi|336255048|ref|YP_004598155.1| - 2.8 7.6 12.1 1.3 8.7 0.1 3.8 4 0 0 4 4 4 0 Ubiquitin-Binding Zinc Finger zf-RING_5 PF14634.6 gi|336255048|ref|YP_004598155.1| - 4.8 7.2 8.8 3.2 7.8 1.2 2.8 2 2 1 3 3 3 0 zinc-RING finger domain Zn_ribbon_recom PF13408.6 gi|336255048|ref|YP_004598155.1| - 5 7.7 10.3 39 4.9 0.1 3.6 3 1 0 3 3 3 0 Recombinase zinc beta ribbon domain Rdx PF10262.9 gi|336255048|ref|YP_004598155.1| - 5.3 7.3 5.5 39 4.5 0.0 3.3 3 1 1 4 4 4 0 Rdx family DNA_RNApol_7kD PF03604.13 gi|336255048|ref|YP_004598155.1| - 7.8 6.3 11.7 38 4.1 0.1 3.9 3 1 0 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_15 PF17032.5 gi|336255048|ref|YP_004598155.1| - 9 7.1 11.3 2.8e+03 -0.8 11.3 3.1 1 1 0 1 1 1 0 zinc-ribbon family Zn_ribbon_SprT PF17283.2 gi|336255048|ref|YP_004598155.1| - 9.4 6.2 8.1 14 5.7 0.5 3.0 3 0 0 3 3 3 0 SprT-like zinc ribbon domain FliD_N PF02465.18 gi|336255049|ref|YP_004598156.1| - 0.11 13.2 0.0 0.38 11.5 0.0 1.9 2 0 0 2 2 2 0 Flagellar hook-associated protein 2 N-terminus ABC_tran_CTD PF16326.5 gi|336255049|ref|YP_004598156.1| - 8.5 6.7 13.9 1.5 9.1 0.8 4.2 4 1 1 5 5 5 0 ABC transporter C-terminal domain MFS_1 PF07690.16 gi|336255051|ref|YP_004598158.1| - 3.7e-48 164.2 52.1 4e-25 88.5 25.9 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|336255051|ref|YP_004598158.1| - 3.9e-10 39.2 27.5 3.8e-08 32.6 4.5 3.1 1 1 1 3 3 3 2 Sugar (and other) transporter MFS_1_like PF12832.7 gi|336255051|ref|YP_004598158.1| - 1.4e-06 27.5 10.7 6.3e-06 25.3 10.7 2.0 1 1 0 1 1 1 1 MFS_1 like family ALMT PF11744.8 gi|336255051|ref|YP_004598158.1| - 0.015 14.1 0.0 0.024 13.5 0.0 1.2 1 0 0 1 1 1 0 Aluminium activated malate transporter PqqD PF05402.12 gi|336255052|ref|YP_004598159.1| - 0.02 15.2 0.1 0.059 13.7 0.1 1.9 1 0 0 1 1 1 0 Coenzyme PQQ synthesis protein D (PqqD) HTH_32 PF13565.6 gi|336255052|ref|YP_004598159.1| - 0.021 15.5 0.3 6.3 7.5 0.0 2.4 2 1 0 2 2 2 0 Homeodomain-like domain Abhydrolase_6 PF12697.7 gi|336255053|ref|YP_004598160.1| - 1.3e-26 94.6 4.5 1.8e-26 94.1 4.5 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|336255053|ref|YP_004598160.1| - 2e-12 47.3 0.0 2.2e-10 40.7 0.0 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|336255053|ref|YP_004598160.1| - 5.4e-09 35.7 0.0 8.9e-09 35.0 0.0 1.4 1 1 0 1 1 1 1 Serine aminopeptidase, S33 DUF4198 PF10670.9 gi|336255053|ref|YP_004598160.1| - 0.029 14.8 0.0 0.04 14.3 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4198) CBM_35 PF16990.5 gi|336255054|ref|YP_004598161.1| - 0.0075 16.5 0.0 0.0093 16.2 0.0 1.2 1 0 0 1 1 1 1 Carbohydrate binding module (family 35) HEAT_2 PF13646.6 gi|336255055|ref|YP_004598162.1| - 1.3e-05 25.4 1.4 0.00044 20.6 0.8 3.0 2 1 0 2 2 2 1 HEAT repeats HEAT_EZ PF13513.6 gi|336255055|ref|YP_004598162.1| - 0.04 14.4 0.3 0.13 12.8 0.0 1.9 2 0 0 2 2 2 0 HEAT-like repeat MeaB PF03308.16 gi|336255056|ref|YP_004598163.1| - 4e-88 294.9 4.2 5e-88 294.6 4.2 1.1 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB cobW PF02492.19 gi|336255056|ref|YP_004598163.1| - 9.2e-07 28.6 1.3 9.4e-06 25.3 1.3 2.3 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain SRP54 PF00448.22 gi|336255056|ref|YP_004598163.1| - 1.7e-05 24.5 0.3 5.9e-05 22.8 0.3 1.8 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain ATP_bind_1 PF03029.17 gi|336255056|ref|YP_004598163.1| - 6e-05 22.9 0.0 0.00018 21.4 0.0 1.7 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein AAA_30 PF13604.6 gi|336255056|ref|YP_004598163.1| - 9.4e-05 22.2 0.0 0.00025 20.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain NTPase_1 PF03266.15 gi|336255056|ref|YP_004598163.1| - 0.00013 22.0 0.1 0.00036 20.5 0.1 1.8 1 0 0 1 1 1 1 NTPase GTP_EFTU PF00009.27 gi|336255056|ref|YP_004598163.1| - 0.0002 20.9 0.0 0.45 10.0 0.0 2.3 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain ABC_tran PF00005.27 gi|336255056|ref|YP_004598163.1| - 0.00043 20.8 0.1 0.00083 19.9 0.1 1.5 1 0 0 1 1 1 1 ABC transporter AAA_16 PF13191.6 gi|336255056|ref|YP_004598163.1| - 0.00053 20.4 0.4 0.0032 17.9 0.1 2.5 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|336255056|ref|YP_004598163.1| - 0.0019 18.5 0.0 0.0077 16.5 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|336255056|ref|YP_004598163.1| - 0.002 18.7 0.3 0.012 16.1 0.1 2.3 3 0 0 3 3 3 1 AAA domain AAA_29 PF13555.6 gi|336255056|ref|YP_004598163.1| - 0.0035 17.0 0.1 0.0079 15.9 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain Zeta_toxin PF06414.12 gi|336255056|ref|YP_004598163.1| - 0.0055 16.0 0.0 0.015 14.6 0.0 1.7 1 0 0 1 1 1 1 Zeta toxin MobB PF03205.14 gi|336255056|ref|YP_004598163.1| - 0.0087 16.0 0.1 0.031 14.2 0.1 2.1 1 1 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.6 gi|336255056|ref|YP_004598163.1| - 0.011 15.9 0.2 0.22 11.7 0.0 2.2 2 0 0 2 2 2 0 AAA domain TrwB_AAD_bind PF10412.9 gi|336255056|ref|YP_004598163.1| - 0.012 14.6 0.0 0.035 13.0 0.0 1.7 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain AAA_28 PF13521.6 gi|336255056|ref|YP_004598163.1| - 0.013 15.7 1.5 0.019 15.2 0.1 1.9 2 0 0 2 2 2 0 AAA domain KAP_NTPase PF07693.14 gi|336255056|ref|YP_004598163.1| - 0.016 14.5 0.0 0.026 13.8 0.0 1.3 1 0 0 1 1 1 0 KAP family P-loop domain MMR_HSR1 PF01926.23 gi|336255056|ref|YP_004598163.1| - 0.026 14.6 0.3 0.059 13.5 0.1 2.0 2 1 0 2 2 1 0 50S ribosome-binding GTPase PRK PF00485.18 gi|336255056|ref|YP_004598163.1| - 0.036 13.8 0.1 0.077 12.7 0.1 1.5 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family KTI12 PF08433.10 gi|336255056|ref|YP_004598163.1| - 0.043 13.3 0.0 0.074 12.5 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 RsgA_GTPase PF03193.16 gi|336255056|ref|YP_004598163.1| - 0.048 13.6 0.1 0.12 12.3 0.0 1.8 2 0 0 2 2 1 0 RsgA GTPase NACHT PF05729.12 gi|336255056|ref|YP_004598163.1| - 0.065 13.2 0.0 0.14 12.0 0.0 1.6 1 0 0 1 1 1 0 NACHT domain NB-ARC PF00931.22 gi|336255056|ref|YP_004598163.1| - 0.082 12.1 0.0 0.13 11.4 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain Ploopntkinase3 PF18751.1 gi|336255056|ref|YP_004598163.1| - 0.083 12.8 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 P-loop Nucleotide Kinase3 AAA_17 PF13207.6 gi|336255056|ref|YP_004598163.1| - 0.084 13.3 0.0 0.084 13.3 0.0 2.3 3 0 0 3 3 1 0 AAA domain AAA_19 PF13245.6 gi|336255056|ref|YP_004598163.1| - 0.088 13.1 0.1 0.3 11.4 0.0 1.9 2 0 0 2 2 1 0 AAA domain CbiA PF01656.23 gi|336255056|ref|YP_004598163.1| - 0.097 12.7 0.0 0.18 11.8 0.0 1.4 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|336255056|ref|YP_004598163.1| - 0.19 11.1 1.9 0.74 9.2 0.2 2.1 2 0 0 2 2 2 0 NUBPL iron-transfer P-loop NTPase DUF815 PF05673.13 gi|336255056|ref|YP_004598163.1| - 0.2 10.8 0.0 0.33 10.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF815) Rnk_N PF14760.6 gi|336255056|ref|YP_004598163.1| - 6 7.4 9.1 6.7 7.3 1.6 3.2 2 1 0 2 2 2 0 Rnk N-terminus B12-binding PF02310.19 gi|336255057|ref|YP_004598164.1| - 3.3e-23 82.0 0.9 3.8e-23 81.8 0.9 1.0 1 0 0 1 1 1 1 B12 binding domain Staph_haemo PF05480.11 gi|336255057|ref|YP_004598164.1| - 0.0074 16.0 0.2 0.33 10.8 0.0 2.4 2 0 0 2 2 2 1 Staphylococcus haemolytic protein DUF1611_N PF17396.2 gi|336255057|ref|YP_004598164.1| - 0.028 14.6 0.2 1 9.6 0.1 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF1611_N) Rossmann-like domain BcrAD_BadFG PF01869.20 gi|336255057|ref|YP_004598164.1| - 0.096 12.2 0.0 0.15 11.5 0.0 1.3 1 1 0 1 1 1 0 BadF/BadG/BcrA/BcrD ATPase family Peripla_BP_6 PF13458.6 gi|336255057|ref|YP_004598164.1| - 0.11 12.2 0.0 0.21 11.2 0.0 1.5 1 1 0 1 1 1 0 Periplasmic binding protein HD PF01966.22 gi|336255058|ref|YP_004598165.1| - 1.2e-15 57.8 1.0 2.1e-15 57.0 1.0 1.4 1 0 0 1 1 1 1 HD domain HD_4 PF13328.6 gi|336255058|ref|YP_004598165.1| - 0.017 14.9 0.1 0.037 13.8 0.1 1.5 1 0 0 1 1 1 0 HD domain TraI_2 PF07514.11 gi|336255058|ref|YP_004598165.1| - 0.041 12.8 0.1 1.4 7.7 0.1 2.3 2 1 0 2 2 2 0 Putative helicase LysE PF01810.18 gi|336255059|ref|YP_004598166.1| - 1.1e-23 83.7 3.1 1.1e-23 83.7 3.1 2.1 1 1 1 2 2 2 2 LysE type translocator MFS_1 PF07690.16 gi|336255060|ref|YP_004598167.1| - 1.2e-27 96.8 67.4 4.1e-16 58.9 41.2 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_4 PF06779.14 gi|336255060|ref|YP_004598167.1| - 1.6e-07 31.0 44.0 2e-07 30.6 44.0 1.0 1 0 0 1 1 1 1 Uncharacterised MFS-type transporter YbfB Methyltransf_25 PF13649.6 gi|336255061|ref|YP_004598168.1| - 2.7e-15 56.8 0.1 4.6e-15 56.1 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|336255061|ref|YP_004598168.1| - 1.7e-12 47.8 0.1 2.9e-12 47.1 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|336255061|ref|YP_004598168.1| - 6.9e-11 41.9 0.0 9e-11 41.5 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|336255061|ref|YP_004598168.1| - 7.2e-11 42.2 0.0 9.4e-11 41.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|336255061|ref|YP_004598168.1| - 2.3e-09 37.2 0.0 2.9e-09 36.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|336255061|ref|YP_004598168.1| - 3.8e-09 37.2 0.1 6.1e-09 36.5 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.14 gi|336255061|ref|YP_004598168.1| - 5.3e-09 35.8 0.0 6.9e-09 35.4 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB Methyltransf_15 PF09445.10 gi|336255061|ref|YP_004598168.1| - 3.5e-05 23.4 0.0 3.5e-05 23.4 0.0 1.1 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase MTS PF05175.14 gi|336255061|ref|YP_004598168.1| - 5.6e-05 22.8 0.0 8.9e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain TPMT PF05724.11 gi|336255061|ref|YP_004598168.1| - 0.00068 19.4 0.0 0.00088 19.0 0.0 1.2 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) NodS PF05401.11 gi|336255061|ref|YP_004598168.1| - 0.0012 18.6 0.0 0.0016 18.1 0.0 1.3 1 0 0 1 1 1 1 Nodulation protein S (NodS) CMAS PF02353.20 gi|336255061|ref|YP_004598168.1| - 0.0016 17.8 0.0 0.0023 17.3 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_18 PF12847.7 gi|336255061|ref|YP_004598168.1| - 0.045 13.7 0.0 0.062 13.2 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain DUF938 PF06080.12 gi|336255061|ref|YP_004598168.1| - 0.048 13.4 0.0 0.076 12.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF938) Methyltransf_24 PF13578.6 gi|336255061|ref|YP_004598168.1| - 0.06 14.4 0.2 0.12 13.4 0.2 1.5 1 0 0 1 1 1 0 Methyltransferase domain 3HCDH_N PF02737.18 gi|336255061|ref|YP_004598168.1| - 0.066 13.1 0.1 0.12 12.2 0.0 1.4 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UPF0020 PF01170.18 gi|336255061|ref|YP_004598168.1| - 0.067 12.9 0.0 0.096 12.4 0.0 1.2 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 PCMT PF01135.19 gi|336255061|ref|YP_004598168.1| - 0.086 12.6 0.0 0.12 12.1 0.0 1.1 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) AhpC-TSA PF00578.21 gi|336255062|ref|YP_004598169.1| - 2.9e-05 24.0 0.0 3.9e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 AhpC/TSA family Thioredoxin_8 PF13905.6 gi|336255062|ref|YP_004598169.1| - 0.00047 20.4 0.0 0.00065 20.0 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like Redoxin PF08534.10 gi|336255062|ref|YP_004598169.1| - 0.0011 18.7 0.0 0.0014 18.4 0.0 1.1 1 0 0 1 1 1 1 Redoxin Thioredoxin PF00085.20 gi|336255062|ref|YP_004598169.1| - 0.0023 17.9 0.0 0.013 15.4 0.0 1.9 2 0 0 2 2 2 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|336255062|ref|YP_004598169.1| - 0.066 13.7 0.0 0.089 13.2 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin-like domain Topoisom_bac PF01131.20 gi|336255063|ref|YP_004598170.1| - 2.2e-123 412.3 0.0 2.7e-123 412.0 0.0 1.1 1 0 0 1 1 1 1 DNA topoisomerase zf-C4_Topoisom PF01396.19 gi|336255063|ref|YP_004598170.1| - 7.8e-20 70.4 14.4 2.4e-13 49.6 1.0 3.6 4 0 0 4 4 4 2 Topoisomerase DNA binding C4 zinc finger Toprim PF01751.22 gi|336255063|ref|YP_004598170.1| - 1.3e-16 60.7 0.1 2.6e-16 59.7 0.1 1.5 1 0 0 1 1 1 1 Toprim domain HHH_5 PF14520.6 gi|336255063|ref|YP_004598170.1| - 1.4e-08 35.2 2.1 1.8e-08 34.9 0.2 2.3 2 0 0 2 2 1 1 Helix-hairpin-helix domain Cdd1 PF11731.8 gi|336255063|ref|YP_004598170.1| - 0.028 14.7 0.0 0.079 13.2 0.0 1.8 1 0 0 1 1 1 0 Pathogenicity locus DNA_pol_lambd_f PF10391.9 gi|336255063|ref|YP_004598170.1| - 0.042 13.7 0.0 0.16 11.9 0.0 2.0 2 0 0 2 2 2 0 Fingers domain of DNA polymerase lambda DUF4332 PF14229.6 gi|336255063|ref|YP_004598170.1| - 0.17 12.2 0.0 0.38 11.0 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4332) zinc_ribbon_2 PF13240.6 gi|336255063|ref|YP_004598170.1| - 0.23 11.2 3.1 18 5.2 0.1 2.9 2 0 0 2 2 2 0 zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|336255063|ref|YP_004598170.1| - 0.72 9.6 2.2 30 4.4 0.2 2.7 2 0 0 2 2 2 0 Rubredoxin metal binding domain TF_Zn_Ribbon PF08271.12 gi|336255063|ref|YP_004598170.1| - 1.4 8.5 8.9 0.81 9.2 0.1 3.9 3 1 0 3 3 3 0 TFIIB zinc-binding Ogr_Delta PF04606.12 gi|336255063|ref|YP_004598170.1| - 5.6 7.0 6.3 2.3 8.2 0.0 3.1 3 0 0 3 3 3 0 Ogr/Delta-like zinc finger Glyco_hydro_97 PF10566.9 gi|336255065|ref|YP_004598172.1| - 5.5e-90 301.5 0.0 8.2e-90 300.9 0.0 1.2 1 0 0 1 1 1 1 Glycoside hydrolase 97 GH97_N PF14508.6 gi|336255065|ref|YP_004598172.1| - 9.1e-62 208.6 0.0 2.1e-61 207.4 0.0 1.6 2 0 0 2 2 2 1 Glycosyl-hydrolase 97 N-terminal Glucodextran_C PF09985.9 gi|336255065|ref|YP_004598172.1| - 3.1e-56 190.4 0.0 8.2e-56 189.0 0.0 1.7 1 0 0 1 1 1 1 C-terminal binding-module, SLH-like, of glucodextranase GH97_C PF14509.6 gi|336255065|ref|YP_004598172.1| - 5.9e-30 103.4 0.0 1.5e-29 102.0 0.0 1.8 1 0 0 1 1 1 1 Glycosyl-hydrolase 97 C-terminal, oligomerisation CBM_35 PF16990.5 gi|336255065|ref|YP_004598172.1| - 0.022 15.0 0.0 0.079 13.2 0.0 1.8 1 1 0 1 1 1 0 Carbohydrate binding module (family 35) Polysacc_synt_3 PF13440.6 gi|336255066|ref|YP_004598173.1| - 9.1e-28 97.3 16.8 1.9e-27 96.2 16.8 1.5 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein Polysacc_synt PF01943.17 gi|336255066|ref|YP_004598173.1| - 2.3e-24 86.2 41.0 9.5e-24 84.2 25.0 2.0 1 1 1 2 2 2 2 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|336255066|ref|YP_004598173.1| - 1.4e-11 44.6 11.5 1.4e-11 44.6 11.5 4.4 2 2 0 3 3 3 2 Polysaccharide biosynthesis C-terminal domain DUF3426 PF11906.8 gi|336255067|ref|YP_004598174.1| - 0.00021 21.5 0.0 0.00039 20.6 0.0 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF3426) DUF2393 PF09624.10 gi|336255067|ref|YP_004598174.1| - 0.066 13.2 0.0 0.08 12.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2393) DUF2103 PF09876.9 gi|336255068|ref|YP_004598175.1| - 1.6e-39 133.8 0.2 2.9e-39 133.0 0.2 1.4 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2103) Ribosomal_L37ae PF01780.19 gi|336255070|ref|YP_004598177.1| - 2.1e-22 79.0 0.1 2.5e-22 78.8 0.1 1.1 1 0 0 1 1 1 1 Ribosomal L37ae protein family DNA_RNApol_7kD PF03604.13 gi|336255071|ref|YP_004598178.1| - 1.9e-10 40.2 6.8 2.3e-10 39.9 6.8 1.1 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit zf-ribbon_3 PF13248.6 gi|336255071|ref|YP_004598178.1| - 5.9e-05 22.3 0.2 0.0044 16.4 0.0 2.1 2 0 0 2 2 2 1 zinc-ribbon domain HypA PF01155.19 gi|336255071|ref|YP_004598178.1| - 0.00072 19.6 0.5 0.00074 19.5 0.5 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf_UBZ PF18439.1 gi|336255071|ref|YP_004598178.1| - 0.00094 18.7 1.7 0.21 11.2 0.4 2.1 1 1 1 2 2 2 2 Ubiquitin-Binding Zinc Finger Zn_Tnp_IS1595 PF12760.7 gi|336255071|ref|YP_004598178.1| - 0.0036 17.3 4.6 0.077 13.0 0.1 2.1 2 0 0 2 2 2 1 Transposase zinc-ribbon domain zf-CHCC PF10276.9 gi|336255071|ref|YP_004598178.1| - 0.0037 17.3 0.5 0.0065 16.5 0.5 1.4 1 0 0 1 1 1 1 Zinc-finger domain zinc_ribbon_2 PF13240.6 gi|336255071|ref|YP_004598178.1| - 0.0057 16.3 2.2 0.17 11.6 0.3 2.1 2 0 0 2 2 2 1 zinc-ribbon domain DZR PF12773.7 gi|336255071|ref|YP_004598178.1| - 0.0067 16.4 1.1 0.014 15.4 1.1 1.6 1 1 0 1 1 1 1 Double zinc ribbon A2L_zn_ribbon PF08792.10 gi|336255071|ref|YP_004598178.1| - 0.0078 15.9 1.0 0.7 9.7 2.3 2.1 1 1 1 2 2 2 2 A2L zinc ribbon domain YacG PF03884.14 gi|336255071|ref|YP_004598178.1| - 0.012 15.3 0.2 0.33 10.7 0.0 2.0 2 0 0 2 2 2 0 DNA gyrase inhibitor YacG RNHCP PF12647.7 gi|336255071|ref|YP_004598178.1| - 0.014 15.4 0.3 0.015 15.3 0.3 1.1 1 0 0 1 1 1 0 RNHCP domain Sgf11 PF08209.11 gi|336255071|ref|YP_004598178.1| - 0.017 14.7 2.2 0.84 9.2 0.3 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Cys_rich_CPXG PF14255.6 gi|336255071|ref|YP_004598178.1| - 0.023 14.6 0.2 0.092 12.7 0.0 2.0 2 0 0 2 2 2 0 Cysteine-rich CPXCG Lar_restr_allev PF14354.6 gi|336255071|ref|YP_004598178.1| - 0.03 14.7 0.7 0.081 13.3 0.0 1.8 1 1 1 2 2 2 0 Restriction alleviation protein Lar zinc-ribbons_6 PF07191.12 gi|336255071|ref|YP_004598178.1| - 0.036 14.0 0.8 0.056 13.4 0.8 1.3 1 1 0 1 1 1 0 zinc-ribbons Anti-TRAP PF15777.5 gi|336255071|ref|YP_004598178.1| - 0.043 13.8 0.1 0.049 13.6 0.1 1.2 1 0 0 1 1 1 0 Tryptophan RNA-binding attenuator protein inhibitory protein DUF951 PF06107.11 gi|336255071|ref|YP_004598178.1| - 0.051 13.5 0.5 3 7.8 0.1 2.1 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF951) zf-Di19 PF05605.12 gi|336255071|ref|YP_004598178.1| - 0.059 13.7 0.1 0.48 10.8 0.0 2.0 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding zinc_ribbon_13 PF09855.9 gi|336255071|ref|YP_004598178.1| - 0.06 13.5 0.7 0.15 12.2 0.1 1.8 1 1 1 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) DUF3268 PF11672.8 gi|336255071|ref|YP_004598178.1| - 0.092 13.1 1.1 0.39 11.1 0.1 1.9 1 1 1 2 2 2 0 zinc-finger-containing domain OrfB_Zn_ribbon PF07282.11 gi|336255071|ref|YP_004598178.1| - 0.12 12.4 3.3 0.19 11.7 2.9 1.6 1 1 0 1 1 1 0 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.12 gi|336255071|ref|YP_004598178.1| - 0.12 11.9 3.4 0.81 9.3 3.9 1.8 1 1 1 2 2 2 0 TFIIB zinc-binding CpXC PF14353.6 gi|336255071|ref|YP_004598178.1| - 0.17 12.0 1.2 0.43 10.6 0.2 1.8 1 1 1 2 2 2 0 CpXC protein Zn-ribbon_8 PF09723.10 gi|336255071|ref|YP_004598178.1| - 0.22 11.7 4.2 0.52 10.5 4.2 1.7 1 1 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_4 PF13717.6 gi|336255071|ref|YP_004598178.1| - 0.4 10.6 5.7 17 5.4 5.7 2.2 1 1 0 1 1 1 0 zinc-ribbon domain Thioredoxin_4 PF13462.6 gi|336255071|ref|YP_004598178.1| - 0.58 10.3 1.8 0.68 10.1 0.0 1.8 1 1 1 2 2 2 0 Thioredoxin Pcc1 PF09341.10 gi|336255072|ref|YP_004598179.1| - 2.9e-11 43.3 0.7 3.2e-11 43.2 0.7 1.0 1 0 0 1 1 1 1 Transcription factor Pcc1 Beta-lactamase PF00144.24 gi|336255073|ref|YP_004598180.1| - 2.4e-68 230.8 0.5 3.1e-68 230.4 0.5 1.1 1 0 0 1 1 1 1 Beta-lactamase Pab87_oct PF13969.6 gi|336255073|ref|YP_004598180.1| - 9.6e-08 32.0 0.0 2e-07 31.0 0.0 1.5 1 0 0 1 1 1 1 Pab87 octamerisation domain MDMPI_N PF11716.8 gi|336255073|ref|YP_004598180.1| - 9.6 6.9 10.2 6.5 7.4 1.6 3.3 2 1 1 3 3 3 0 Mycothiol maleylpyruvate isomerase N-terminal domain VEGFR-2_TMD PF17988.1 gi|336255076|ref|YP_004598183.1| - 0.35 10.3 4.6 0.87 9.1 4.6 1.7 1 0 0 1 1 1 0 VEGFR-2 Transmembrane domain DUF2797 PF10977.8 gi|336255077|ref|YP_004598184.1| - 1.2e-30 107.2 8.9 1.1e-28 100.8 8.9 2.2 1 1 0 1 1 1 1 Protein of unknown function (DUF2797) SoxG PF04268.12 gi|336255077|ref|YP_004598184.1| - 0.064 13.4 0.0 0.21 11.7 0.0 1.7 2 0 0 2 2 2 0 Sarcosine oxidase, gamma subunit family BsuPI PF12690.7 gi|336255078|ref|YP_004598185.1| - 3.8e-33 113.5 0.1 4.2e-33 113.4 0.1 1.1 1 0 0 1 1 1 1 Intracellular proteinase inhibitor CPT_N PF16484.5 gi|336255078|ref|YP_004598185.1| - 0.029 14.4 0.1 0.055 13.5 0.1 1.5 1 0 0 1 1 1 0 Carnitine O-palmitoyltransferase N-terminus DUF11 PF01345.18 gi|336255078|ref|YP_004598185.1| - 0.036 14.4 0.0 0.052 13.9 0.0 1.4 1 1 0 1 1 1 0 Domain of unknown function DUF11 DUF4232 PF14016.6 gi|336255078|ref|YP_004598185.1| - 0.055 13.6 0.1 0.086 13.0 0.1 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF4232) Glyco_hydr_116N PF12215.8 gi|336255078|ref|YP_004598185.1| - 0.084 12.3 0.0 0.09 12.2 0.0 1.1 1 0 0 1 1 1 0 beta-glucosidase 2, glycosyl-hydrolase family 116 N-term DUF5067 PF16729.5 gi|336255078|ref|YP_004598185.1| - 0.2 11.6 0.0 0.24 11.3 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5067) CbiX PF01903.17 gi|336255081|ref|YP_004598188.1| - 3.7e-44 149.4 0.6 6.8e-22 77.8 0.1 2.2 2 0 0 2 2 2 2 CbiX CbiK PF06180.11 gi|336255081|ref|YP_004598188.1| - 3.1e-08 33.3 0.1 0.00019 20.8 0.2 2.1 1 1 0 2 2 2 2 Cobalt chelatase (CbiK) LTV PF04180.14 gi|336255081|ref|YP_004598188.1| - 0.011 15.5 0.5 0.13 12.0 0.0 2.0 1 1 1 2 2 2 0 Low temperature viability protein DR2241 PF18069.1 gi|336255082|ref|YP_004598189.1| - 7.4e-46 154.6 0.4 7.4e-46 154.6 0.4 2.3 2 0 0 2 2 2 1 DR2241 stabilising domain Fer4_23 PF18009.1 gi|336255082|ref|YP_004598189.1| - 3.3e-31 107.6 0.4 6.6e-31 106.6 0.4 1.5 1 0 0 1 1 1 1 4Fe-4S iron-sulfur cluster binding domain Trm112p PF03966.16 gi|336255084|ref|YP_004598191.1| - 2.2e-09 37.8 1.0 4.8e-09 36.7 1.0 1.6 1 1 0 1 1 1 1 Trm112p-like protein DUF1451 PF07295.11 gi|336255084|ref|YP_004598191.1| - 0.012 15.6 0.1 0.014 15.4 0.1 1.1 1 0 0 1 1 1 0 Zinc-ribbon containing domain Adenylsucc_synt PF00709.21 gi|336255085|ref|YP_004598192.1| - 2.5e-154 514.2 0.1 2.9e-154 514.0 0.1 1.0 1 0 0 1 1 1 1 Adenylosuccinate synthetase HTH_12 PF08461.10 gi|336255086|ref|YP_004598193.1| - 0.009 15.9 0.1 0.017 15.1 0.0 1.6 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_24 PF13412.6 gi|336255086|ref|YP_004598193.1| - 0.012 15.2 0.4 0.021 14.4 0.0 1.6 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|336255086|ref|YP_004598193.1| - 0.026 14.4 0.1 0.056 13.3 0.1 1.5 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|336255086|ref|YP_004598193.1| - 0.029 14.3 0.3 0.044 13.7 0.1 1.4 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB DUF977 PF06163.11 gi|336255086|ref|YP_004598193.1| - 0.031 14.2 0.0 0.035 14.1 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) Phage_rep_org_N PF09681.10 gi|336255086|ref|YP_004598193.1| - 0.049 13.6 0.0 0.092 12.7 0.0 1.5 1 1 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) DUF3450 PF11932.8 gi|336255087|ref|YP_004598194.1| - 6.9e-05 22.3 4.0 0.00014 21.2 4.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF3450) DUF3552 PF12072.8 gi|336255087|ref|YP_004598194.1| - 0.00052 19.5 9.3 0.00098 18.6 9.3 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF3552) CENP-Q PF13094.6 gi|336255087|ref|YP_004598194.1| - 0.0011 19.2 2.1 0.0033 17.6 2.1 1.8 1 0 0 1 1 1 1 CENP-Q, a CENPA-CAD centromere complex subunit HMMR_N PF15905.5 gi|336255087|ref|YP_004598194.1| - 0.0014 18.2 7.6 0.0023 17.4 7.6 1.2 1 0 0 1 1 1 1 Hyaluronan mediated motility receptor N-terminal FlxA PF14282.6 gi|336255087|ref|YP_004598194.1| - 0.0019 18.1 3.1 0.0019 18.1 3.1 2.3 2 1 1 3 3 1 1 FlxA-like protein DUF812 PF05667.11 gi|336255087|ref|YP_004598194.1| - 0.0021 17.0 9.0 0.0029 16.6 9.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF812) Tektin PF03148.14 gi|336255087|ref|YP_004598194.1| - 0.0032 16.3 3.1 0.0032 16.3 3.1 1.8 2 0 0 2 2 2 1 Tektin family Spc29 PF17082.5 gi|336255087|ref|YP_004598194.1| - 0.0033 17.3 0.0 0.006 16.5 0.0 1.3 1 0 0 1 1 1 1 Spindle Pole Component 29 Fmp27_WPPW PF10359.9 gi|336255087|ref|YP_004598194.1| - 0.0034 16.3 0.5 0.0054 15.6 0.5 1.2 1 0 0 1 1 1 1 RNA pol II promoter Fmp27 protein domain CENP-F_leu_zip PF10473.9 gi|336255087|ref|YP_004598194.1| - 0.0043 17.1 11.2 0.0081 16.2 11.2 1.4 1 0 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Pox_A_type_inc PF04508.12 gi|336255087|ref|YP_004598194.1| - 0.0065 16.3 0.6 0.0065 16.3 0.6 2.5 2 0 0 2 2 1 1 Viral A-type inclusion protein repeat Rootletin PF15035.6 gi|336255087|ref|YP_004598194.1| - 0.0073 16.4 6.8 0.013 15.5 6.8 1.4 1 0 0 1 1 1 1 Ciliary rootlet component, centrosome cohesion DUF1664 PF07889.12 gi|336255087|ref|YP_004598194.1| - 0.0086 16.1 2.1 0.017 15.2 2.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1664) Cep57_CLD_2 PF14197.6 gi|336255087|ref|YP_004598194.1| - 0.0097 16.0 15.1 0.02 15.0 15.1 1.5 1 0 0 1 1 1 1 Centrosome localisation domain of PPC89 TMF_TATA_bd PF12325.8 gi|336255087|ref|YP_004598194.1| - 0.01 16.1 10.1 0.02 15.1 10.1 1.4 1 0 0 1 1 1 0 TATA element modulatory factor 1 TATA binding FapA PF03961.13 gi|336255087|ref|YP_004598194.1| - 0.014 14.0 0.2 0.02 13.5 0.2 1.1 1 0 0 1 1 1 0 Flagellar Assembly Protein A Atg14 PF10186.9 gi|336255087|ref|YP_004598194.1| - 0.014 14.5 7.6 0.027 13.5 7.6 1.4 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 AAA_23 PF13476.6 gi|336255087|ref|YP_004598194.1| - 0.016 15.7 1.9 0.026 15.0 1.9 1.4 1 0 0 1 1 1 0 AAA domain DUF4094 PF13334.6 gi|336255087|ref|YP_004598194.1| - 0.017 15.5 2.7 0.035 14.5 2.7 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4094) bZIP_1 PF00170.21 gi|336255087|ref|YP_004598194.1| - 0.019 15.1 10.3 0.19 11.8 4.9 2.4 1 1 1 2 2 2 0 bZIP transcription factor ZapB PF06005.12 gi|336255087|ref|YP_004598194.1| - 0.02 15.4 13.5 0.02 15.4 13.5 2.2 2 1 0 2 2 1 0 Cell division protein ZapB BLOC1_2 PF10046.9 gi|336255087|ref|YP_004598194.1| - 0.023 15.0 6.5 0.059 13.7 6.5 1.7 1 0 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Syntaxin-6_N PF09177.11 gi|336255087|ref|YP_004598194.1| - 0.024 15.2 1.5 0.78 10.3 1.8 2.6 2 0 0 2 2 2 0 Syntaxin 6, N-terminal Tropomyosin_1 PF12718.7 gi|336255087|ref|YP_004598194.1| - 0.028 14.6 10.4 0.072 13.3 10.4 1.6 1 0 0 1 1 1 0 Tropomyosin like DUF2884 PF11101.8 gi|336255087|ref|YP_004598194.1| - 0.03 13.8 0.7 0.05 13.1 0.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2884) Syntaxin_2 PF14523.6 gi|336255087|ref|YP_004598194.1| - 0.032 14.6 1.3 0.059 13.8 1.3 1.3 1 0 0 1 1 1 0 Syntaxin-like protein ABC_tran_CTD PF16326.5 gi|336255087|ref|YP_004598194.1| - 0.04 14.2 14.9 0.4 11.0 14.8 2.6 1 1 0 1 1 1 0 ABC transporter C-terminal domain Herpes_UL25 PF01499.16 gi|336255087|ref|YP_004598194.1| - 0.044 12.3 2.2 0.084 11.4 2.2 1.4 1 0 0 1 1 1 0 Herpesvirus UL25 family FAM76 PF16046.5 gi|336255087|ref|YP_004598194.1| - 0.054 12.8 4.4 0.081 12.3 4.4 1.1 1 0 0 1 1 1 0 FAM76 protein CENP-H PF05837.12 gi|336255087|ref|YP_004598194.1| - 0.072 13.5 9.8 0.16 12.4 9.8 1.5 1 0 0 1 1 1 0 Centromere protein H (CENP-H) TMF_DNA_bd PF12329.8 gi|336255087|ref|YP_004598194.1| - 0.081 12.9 13.9 0.23 11.5 13.9 1.7 1 1 0 1 1 1 0 TATA element modulatory factor 1 DNA binding HOOK PF05622.12 gi|336255087|ref|YP_004598194.1| - 0.09 10.9 6.5 0.13 10.4 6.5 1.1 1 0 0 1 1 1 0 HOOK protein TMPIT PF07851.13 gi|336255087|ref|YP_004598194.1| - 0.091 12.0 0.5 0.13 11.5 0.5 1.1 1 0 0 1 1 1 0 TMPIT-like protein DUF2968 PF11180.8 gi|336255087|ref|YP_004598194.1| - 0.11 12.2 9.9 0.19 11.3 9.9 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2968) Spc7 PF08317.11 gi|336255087|ref|YP_004598194.1| - 0.11 11.3 8.3 0.19 10.6 8.3 1.3 1 0 0 1 1 1 0 Spc7 kinetochore protein PspA_IM30 PF04012.12 gi|336255087|ref|YP_004598194.1| - 0.12 12.0 9.3 0.043 13.4 4.1 2.5 2 0 0 2 2 2 0 PspA/IM30 family YabA PF06156.13 gi|336255087|ref|YP_004598194.1| - 0.12 13.1 5.1 0.69 10.6 4.9 2.2 2 0 0 2 2 1 0 Initiation control protein YabA HemX PF04375.14 gi|336255087|ref|YP_004598194.1| - 0.12 11.6 2.7 0.22 10.8 2.7 1.3 1 0 0 1 1 1 0 HemX, putative uroporphyrinogen-III C-methyltransferase Macoilin PF09726.9 gi|336255087|ref|YP_004598194.1| - 0.17 10.4 10.2 0.24 9.9 10.2 1.1 1 0 0 1 1 1 0 Macoilin family V_ATPase_I PF01496.19 gi|336255087|ref|YP_004598194.1| - 0.18 9.7 0.1 0.29 9.0 0.1 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Prefoldin_2 PF01920.20 gi|336255087|ref|YP_004598194.1| - 0.22 11.5 12.7 1.5 8.8 6.6 2.4 1 1 1 2 2 2 0 Prefoldin subunit ADIP PF11559.8 gi|336255087|ref|YP_004598194.1| - 0.23 11.5 11.9 0.84 9.7 11.9 1.8 1 1 0 1 1 1 0 Afadin- and alpha -actinin-Binding DUF16 PF01519.16 gi|336255087|ref|YP_004598194.1| - 0.24 11.9 2.9 0.49 10.9 2.9 1.4 1 0 0 1 1 1 0 Protein of unknown function DUF16 Nup54 PF13874.6 gi|336255087|ref|YP_004598194.1| - 0.25 11.5 3.7 0.49 10.5 3.7 1.4 1 0 0 1 1 1 0 Nucleoporin complex subunit 54 Laminin_II PF06009.12 gi|336255087|ref|YP_004598194.1| - 0.39 10.7 4.4 1 9.4 4.4 1.6 1 0 0 1 1 1 0 Laminin Domain II GAS PF13851.6 gi|336255087|ref|YP_004598194.1| - 0.41 10.0 8.1 0.91 8.8 8.1 1.5 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding DUF724 PF05266.14 gi|336255087|ref|YP_004598194.1| - 0.42 10.4 4.4 0.82 9.5 4.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF724) Tmemb_cc2 PF10267.9 gi|336255087|ref|YP_004598194.1| - 0.42 9.7 9.5 0.67 9.0 9.5 1.3 1 0 0 1 1 1 0 Predicted transmembrane and coiled-coil 2 protein DUF4795 PF16043.5 gi|336255087|ref|YP_004598194.1| - 0.44 10.1 4.4 0.75 9.4 4.4 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4795) Mod_r PF07200.13 gi|336255087|ref|YP_004598194.1| - 0.45 10.6 7.6 0.89 9.6 7.6 1.4 1 0 0 1 1 1 0 Modifier of rudimentary (Mod(r)) protein JIP_LZII PF16471.5 gi|336255087|ref|YP_004598194.1| - 0.51 10.5 10.7 2 8.7 10.7 1.9 1 1 0 1 1 1 0 JNK-interacting protein leucine zipper II DUF3375 PF11855.8 gi|336255087|ref|YP_004598194.1| - 0.58 9.0 15.5 1.6 7.6 15.5 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF3375) Nsp1_C PF05064.13 gi|336255087|ref|YP_004598194.1| - 0.65 9.8 3.9 1.4 8.7 3.9 1.5 1 0 0 1 1 1 0 Nsp1-like C-terminal region CtIP_N PF10482.9 gi|336255087|ref|YP_004598194.1| - 0.71 9.9 6.6 1.6 8.8 6.6 1.5 1 0 0 1 1 1 0 Tumour-suppressor protein CtIP N-terminal domain UPF0242 PF06785.11 gi|336255087|ref|YP_004598194.1| - 0.82 9.7 6.9 1.5 8.9 6.9 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus EzrA PF06160.12 gi|336255087|ref|YP_004598194.1| - 0.85 7.7 7.2 1.2 7.2 7.2 1.1 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA DUF3287 PF11690.8 gi|336255087|ref|YP_004598194.1| - 0.91 9.3 2.5 1.4 8.6 2.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3287) SHE3 PF17078.5 gi|336255087|ref|YP_004598194.1| - 1.1 8.9 7.0 2 8.1 7.0 1.3 1 0 0 1 1 1 0 SWI5-dependent HO expression protein 3 Sec34 PF04136.15 gi|336255087|ref|YP_004598194.1| - 1.2 9.0 3.5 2.1 8.2 3.5 1.3 1 0 0 1 1 1 0 Sec34-like family DivIC PF04977.15 gi|336255087|ref|YP_004598194.1| - 1.2 8.9 13.7 0.59 9.9 5.2 2.4 1 1 1 2 2 2 0 Septum formation initiator JAKMIP_CC3 PF16034.5 gi|336255087|ref|YP_004598194.1| - 1.3 8.9 11.9 0.041 13.8 4.7 2.1 2 0 0 2 2 1 0 JAKMIP CC3 domain HSBP1 PF06825.12 gi|336255087|ref|YP_004598194.1| - 1.6 8.7 5.5 2.6 8.0 0.5 2.5 2 0 0 2 2 2 0 Heat shock factor binding protein 1 Cnn_1N PF07989.11 gi|336255087|ref|YP_004598194.1| - 1.7 8.8 8.3 3.9 7.7 8.3 1.6 1 0 0 1 1 1 0 Centrosomin N-terminal motif 1 Shugoshin_N PF07558.11 gi|336255087|ref|YP_004598194.1| - 2.6 8.0 5.3 3.4 7.6 0.4 2.3 1 1 1 2 2 2 0 Shugoshin N-terminal coiled-coil region DUF3584 PF12128.8 gi|336255087|ref|YP_004598194.1| - 2.7 5.4 12.6 3.7 4.9 12.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) APG6_N PF17675.1 gi|336255087|ref|YP_004598194.1| - 2.8 8.5 16.6 0.032 14.7 8.7 1.8 2 0 0 2 2 1 0 Apg6 coiled-coil region ERM PF00769.19 gi|336255087|ref|YP_004598194.1| - 3.7 7.3 17.2 0.19 11.5 11.5 1.6 2 0 0 2 2 1 0 Ezrin/radixin/moesin family Prefoldin PF02996.17 gi|336255087|ref|YP_004598194.1| - 3.7 7.5 7.8 4.2 7.3 4.1 2.2 1 1 1 2 2 2 0 Prefoldin subunit bZIP_2 PF07716.15 gi|336255087|ref|YP_004598194.1| - 3.8 7.7 14.7 2 8.6 4.6 2.5 1 1 1 2 2 2 0 Basic region leucine zipper FemAB PF02388.16 gi|336255087|ref|YP_004598194.1| - 4.6 6.0 4.7 6.6 5.5 4.7 1.1 1 0 0 1 1 1 0 FemAB family FUSC PF04632.12 gi|336255087|ref|YP_004598194.1| - 4.8 5.6 4.5 7.2 5.0 4.5 1.2 1 0 0 1 1 1 0 Fusaric acid resistance protein family AAA_13 PF13166.6 gi|336255087|ref|YP_004598194.1| - 6.4 5.3 5.9 9.8 4.7 5.9 1.1 1 0 0 1 1 1 0 AAA domain UPF0449 PF15136.6 gi|336255087|ref|YP_004598194.1| - 6.6 7.3 8.4 1.8 9.1 4.7 2.0 2 0 0 2 2 1 0 Uncharacterised protein family UPF0449 DUF4337 PF14235.6 gi|336255087|ref|YP_004598194.1| - 6.6 6.8 7.3 3.4 7.8 3.6 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4337) DUF2312 PF10073.9 gi|336255087|ref|YP_004598194.1| - 7.8 6.2 11.6 0.55 9.9 3.6 2.5 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2312) SlyX PF04102.12 gi|336255087|ref|YP_004598194.1| - 8.3 7.1 8.7 37 5.0 6.7 2.8 1 1 1 2 2 2 0 SlyX Swi5 PF07061.11 gi|336255087|ref|YP_004598194.1| - 9.2 6.4 6.4 14 5.8 0.8 2.4 1 1 1 2 2 2 0 Swi5 UPF0058 PF01893.16 gi|336255088|ref|YP_004598195.1| - 1.2e-34 118.5 1.0 1.3e-34 118.3 1.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 Ada3 PF10198.9 gi|336255088|ref|YP_004598195.1| - 0.01 16.0 0.0 0.011 15.9 0.0 1.1 1 0 0 1 1 1 0 Histone acetyltransferases subunit 3 DUF998 PF06197.13 gi|336255089|ref|YP_004598196.1| - 6.6e-14 51.9 37.4 8.6e-14 51.6 36.6 1.5 1 1 1 2 2 2 2 Protein of unknown function (DUF998) Frag1 PF10277.9 gi|336255089|ref|YP_004598196.1| - 0.027 14.0 0.5 0.065 12.8 0.5 1.8 1 1 0 1 1 1 0 Frag1/DRAM/Sfk1 family ABC_tran PF00005.27 gi|336255090|ref|YP_004598197.1| - 7.7e-33 113.9 0.0 1.3e-32 113.2 0.0 1.4 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 gi|336255090|ref|YP_004598197.1| - 4.1e-09 36.5 0.7 4.1e-09 36.5 0.7 2.2 3 0 0 3 3 3 1 TOBE domain AAA_21 PF13304.6 gi|336255090|ref|YP_004598197.1| - 8e-05 22.6 0.2 0.33 10.7 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|336255090|ref|YP_004598197.1| - 0.00093 19.6 0.1 0.0021 18.5 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain Rad17 PF03215.15 gi|336255090|ref|YP_004598197.1| - 0.001 19.0 0.0 0.0016 18.4 0.0 1.2 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_33 PF13671.6 gi|336255090|ref|YP_004598197.1| - 0.0018 18.5 0.0 0.004 17.3 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|336255090|ref|YP_004598197.1| - 0.0081 16.4 0.6 0.026 14.8 0.6 1.9 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|336255090|ref|YP_004598197.1| - 0.014 15.8 0.1 0.061 13.8 0.1 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SbcCD_C PF13558.6 gi|336255090|ref|YP_004598197.1| - 0.072 13.3 0.4 0.41 10.9 0.4 2.1 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit RsgA_GTPase PF03193.16 gi|336255090|ref|YP_004598197.1| - 0.073 13.0 0.0 0.15 11.9 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase T2SSE PF00437.20 gi|336255092|ref|YP_004598199.1| - 4.1e-50 170.4 0.0 5.9e-50 169.8 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein HEM4 PF02602.15 gi|336255092|ref|YP_004598199.1| - 0.006 15.9 0.1 0.051 12.9 0.0 2.3 2 0 0 2 2 2 1 Uroporphyrinogen-III synthase HemD AAA_29 PF13555.6 gi|336255092|ref|YP_004598199.1| - 0.048 13.4 0.0 0.097 12.4 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_7 PF12775.7 gi|336255092|ref|YP_004598199.1| - 0.13 11.8 0.0 0.23 11.0 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region T2SSF PF00482.23 gi|336255093|ref|YP_004598200.1| - 1.5e-37 128.4 15.3 2.4e-21 76.0 2.5 3.4 3 0 0 3 3 3 2 Type II secretion system (T2SS), protein F DUF2207 PF09972.9 gi|336255093|ref|YP_004598200.1| - 0.00034 19.5 3.3 0.3 9.8 0.0 3.2 3 0 0 3 3 3 3 Predicted membrane protein (DUF2207) DUF4064 PF13273.6 gi|336255093|ref|YP_004598200.1| - 0.18 12.1 12.9 1.7 8.9 0.2 4.2 4 0 0 4 4 4 0 Protein of unknown function (DUF4064) Methyltransf_11 PF08241.12 gi|336255094|ref|YP_004598201.1| - 4.8e-20 72.0 0.1 8.1e-20 71.3 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|336255094|ref|YP_004598201.1| - 2.4e-19 69.8 0.1 6e-19 68.6 0.1 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|336255094|ref|YP_004598201.1| - 1.3e-12 47.8 0.0 1.8e-12 47.3 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|336255094|ref|YP_004598201.1| - 3.8e-09 37.2 0.0 7.1e-09 36.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|336255094|ref|YP_004598201.1| - 7.2e-06 25.5 0.0 9.4e-06 25.1 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|336255094|ref|YP_004598201.1| - 0.00034 20.5 0.0 0.00051 19.9 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.15 gi|336255094|ref|YP_004598201.1| - 0.0021 17.9 0.2 0.0073 16.2 0.2 1.7 1 1 0 1 1 1 1 Hypothetical methyltransferase NodS PF05401.11 gi|336255094|ref|YP_004598201.1| - 0.059 13.0 0.0 0.081 12.5 0.0 1.1 1 0 0 1 1 1 0 Nodulation protein S (NodS) PSII_BNR PF14870.6 gi|336255095|ref|YP_004598202.1| - 0.0015 17.9 10.3 0.04 13.2 0.5 3.7 1 1 3 4 4 4 4 Photosynthesis system II assembly factor YCF48 DUF4314 PF14192.6 gi|336255095|ref|YP_004598202.1| - 0.14 12.1 0.8 0.52 10.3 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4314) PAS_4 PF08448.10 gi|336255097|ref|YP_004598204.1| - 1.2e-38 131.7 9.9 1.5e-12 47.7 0.3 3.9 4 0 0 4 4 4 3 PAS fold HATPase_c PF02518.26 gi|336255097|ref|YP_004598204.1| - 5.2e-29 101.0 0.0 1.5e-27 96.3 0.0 2.5 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|336255097|ref|YP_004598204.1| - 3.8e-18 65.7 0.0 9.5e-08 32.2 0.0 3.7 3 0 0 3 3 3 3 PAS domain GAF_2 PF13185.6 gi|336255097|ref|YP_004598204.1| - 2.3e-12 47.4 3.0 5e-12 46.3 1.5 2.4 2 0 0 2 2 2 1 GAF domain GAF PF01590.26 gi|336255097|ref|YP_004598204.1| - 2.4e-11 44.4 0.1 6.3e-11 43.0 0.1 1.8 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.6 gi|336255097|ref|YP_004598204.1| - 4.7e-10 39.9 0.0 8.2e-10 39.1 0.0 1.4 1 0 0 1 1 1 1 GAF domain HisKA PF00512.25 gi|336255097|ref|YP_004598204.1| - 1.9e-09 37.4 1.5 3.2e-08 33.5 0.1 3.3 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS PF00989.25 gi|336255097|ref|YP_004598204.1| - 1.8e-05 24.7 0.1 0.19 11.8 0.0 4.0 3 1 1 4 4 4 2 PAS fold HATPase_c_5 PF14501.6 gi|336255097|ref|YP_004598204.1| - 4.2e-05 23.4 0.0 0.00011 22.1 0.0 1.7 2 0 0 2 2 2 1 GHKL domain HATPase_c_2 PF13581.6 gi|336255097|ref|YP_004598204.1| - 0.00013 21.9 0.5 0.0004 20.4 0.1 2.0 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain PAS_3 PF08447.12 gi|336255097|ref|YP_004598204.1| - 0.011 16.0 2.0 1.5 9.1 0.0 4.1 5 0 0 5 5 5 0 PAS fold HATPase_c_3 PF13589.6 gi|336255097|ref|YP_004598204.1| - 0.026 14.3 0.0 0.058 13.2 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Acetyltransf_1 PF00583.25 gi|336255100|ref|YP_004598207.1| - 8.9e-08 32.4 0.0 1.8e-07 31.4 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|336255100|ref|YP_004598207.1| - 0.013 15.4 0.0 0.021 14.8 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|336255100|ref|YP_004598207.1| - 0.03 14.5 0.0 0.055 13.6 0.0 1.5 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Acetyltransf_7 PF13508.7 gi|336255100|ref|YP_004598207.1| - 0.17 12.4 0.0 0.27 11.7 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain PQQ_2 PF13360.6 gi|336255102|ref|YP_004598209.1| - 2.3e-20 73.2 11.0 3.4e-10 39.9 4.6 2.9 1 1 0 2 2 2 2 PQQ-like domain PQQ PF01011.21 gi|336255102|ref|YP_004598209.1| - 3.1e-07 30.0 7.2 1.6 8.8 0.1 6.2 6 0 0 6 6 6 4 PQQ enzyme repeat PQQ_3 PF13570.6 gi|336255102|ref|YP_004598209.1| - 0.00039 20.8 29.4 0.08 13.5 0.4 7.8 8 1 0 8 8 8 2 PQQ-like domain XPG_I PF00867.18 gi|336255103|ref|YP_004598210.1| - 9.2e-22 77.2 0.0 1.8e-21 76.3 0.0 1.5 1 0 0 1 1 1 1 XPG I-region XPG_N PF00752.17 gi|336255103|ref|YP_004598210.1| - 1.3e-10 41.6 0.0 2.3e-10 40.9 0.0 1.4 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.20 gi|336255103|ref|YP_004598210.1| - 4.1e-05 24.1 0.0 0.00011 22.7 0.0 1.8 1 0 0 1 1 1 1 5'-3' exonuclease, C-terminal SAM fold 5_3_exonuc_N PF02739.16 gi|336255103|ref|YP_004598210.1| - 0.0086 16.0 0.0 0.032 14.1 0.0 1.9 2 0 0 2 2 2 1 5'-3' exonuclease, N-terminal resolvase-like domain Chorismate_synt PF01264.21 gi|336255103|ref|YP_004598210.1| - 0.19 10.4 1.0 0.24 10.1 0.2 1.5 2 0 0 2 2 2 0 Chorismate synthase SlyX PF04102.12 gi|336255103|ref|YP_004598210.1| - 2.7 8.7 6.0 2 9.1 0.2 2.7 2 1 1 3 3 3 0 SlyX ADH_zinc_N PF00107.26 gi|336255104|ref|YP_004598211.1| - 9.3e-25 87.1 0.1 1.9e-24 86.1 0.1 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|336255104|ref|YP_004598211.1| - 1.5e-14 55.1 0.0 4.5e-14 53.6 0.0 1.8 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.12 gi|336255104|ref|YP_004598211.1| - 3.7e-10 39.6 0.0 1.7e-09 37.5 0.0 2.0 1 1 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain AlaDh_PNT_C PF01262.21 gi|336255104|ref|YP_004598211.1| - 0.012 14.9 0.1 0.023 14.0 0.1 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain UBA PF00627.31 gi|336255104|ref|YP_004598211.1| - 0.093 12.7 0.3 0.3 11.0 0.1 2.0 2 0 0 2 2 2 0 UBA/TS-N domain Pyr_redox_2 PF07992.14 gi|336255105|ref|YP_004598212.1| - 1.5e-30 106.5 0.3 1.9e-30 106.1 0.3 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|336255105|ref|YP_004598212.1| - 3.9e-12 46.6 1.0 8.6e-09 35.8 0.1 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Sacchrp_dh_NADP PF03435.18 gi|336255105|ref|YP_004598212.1| - 8.9e-05 22.8 0.2 0.0011 19.3 0.0 2.4 2 1 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain DAO PF01266.24 gi|336255105|ref|YP_004598212.1| - 0.00056 19.6 7.7 0.73 9.4 0.1 3.6 2 1 2 4 4 4 2 FAD dependent oxidoreductase NAD_binding_9 PF13454.6 gi|336255105|ref|YP_004598212.1| - 0.00061 19.8 4.1 4.4 7.3 0.2 4.0 2 2 2 4 4 4 2 FAD-NAD(P)-binding NAD_binding_8 PF13450.6 gi|336255105|ref|YP_004598212.1| - 0.0093 16.2 0.2 1.9 8.8 0.0 2.7 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain TrkA_N PF02254.18 gi|336255105|ref|YP_004598212.1| - 0.072 13.4 0.3 0.62 10.3 0.1 2.3 2 0 0 2 2 2 0 TrkA-N domain PapC_C PF13953.6 gi|336255105|ref|YP_004598212.1| - 0.091 12.6 0.0 0.31 10.9 0.0 2.0 1 0 0 1 1 1 0 PapC C-terminal domain Thi4 PF01946.17 gi|336255105|ref|YP_004598212.1| - 0.11 11.7 0.2 2.2 7.5 0.0 2.2 2 0 0 2 2 2 0 Thi4 family Complex1_49kDa PF00346.19 gi|336255107|ref|YP_004598214.1| - 4.3e-84 281.8 0.1 1e-82 277.3 0.1 2.1 1 1 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.19 gi|336255107|ref|YP_004598214.1| - 5.9e-36 123.8 0.1 1.1e-35 122.8 0.1 1.5 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Autoind_bind PF03472.15 gi|336255107|ref|YP_004598214.1| - 0.045 13.2 0.0 0.094 12.2 0.0 1.6 1 0 0 1 1 1 0 Autoinducer binding domain PALP PF00291.25 gi|336255108|ref|YP_004598215.1| - 3.9e-45 154.5 0.8 4.7e-45 154.3 0.8 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Ni_hydr_CYTB PF01292.20 gi|336255111|ref|YP_004598218.1| - 3.2e-19 69.2 14.4 3.2e-19 69.2 14.4 2.0 2 1 0 2 2 2 1 Prokaryotic cytochrome b561 PepSY_TM PF03929.16 gi|336255111|ref|YP_004598218.1| - 0.0056 16.4 2.1 0.0056 16.4 2.1 3.1 3 0 0 3 3 3 1 PepSY-associated TM region DUF2371 PF10177.9 gi|336255111|ref|YP_004598218.1| - 0.07 13.3 0.0 0.26 11.4 0.0 1.9 2 0 0 2 2 2 0 Uncharacterised conserved protein (DUF2371) DctQ PF04290.12 gi|336255111|ref|YP_004598218.1| - 0.074 13.0 0.2 0.074 13.0 0.2 3.2 3 0 0 3 3 3 0 Tripartite ATP-independent periplasmic transporters, DctQ component SIT PF15330.6 gi|336255111|ref|YP_004598218.1| - 0.31 11.5 1.8 28 5.2 0.0 2.4 2 0 0 2 2 2 0 SHP2-interacting transmembrane adaptor protein, SIT COX14 PF14880.6 gi|336255111|ref|YP_004598218.1| - 8.2 6.4 8.5 5.4 6.9 0.2 3.4 3 0 0 3 3 3 0 Cytochrome oxidase c assembly DUF4227 PF14004.6 gi|336255111|ref|YP_004598218.1| - 9 6.4 9.0 9.9 6.2 0.9 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF4227) Fer4_11 PF13247.6 gi|336255113|ref|YP_004598220.1| - 2.5e-16 59.6 12.1 2.5e-16 59.6 12.1 2.1 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|336255113|ref|YP_004598220.1| - 1.8e-15 57.2 24.9 1.8e-07 31.6 7.3 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|336255113|ref|YP_004598220.1| - 4.3e-13 49.2 24.0 5e-06 26.6 8.3 3.2 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.27 gi|336255113|ref|YP_004598220.1| - 6.2e-11 41.6 31.9 8.2e-06 25.4 1.0 5.3 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_10 PF13237.6 gi|336255113|ref|YP_004598220.1| - 3.7e-08 33.4 30.6 3.7e-05 23.7 9.7 3.2 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|336255113|ref|YP_004598220.1| - 2.4e-07 30.7 31.7 0.056 14.0 2.3 4.4 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_2 PF12797.7 gi|336255113|ref|YP_004598220.1| - 2.5e-07 30.4 32.8 0.0024 17.9 0.8 4.3 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_16 PF13484.6 gi|336255113|ref|YP_004598220.1| - 4.2e-07 30.8 20.1 0.088 13.8 0.7 4.6 3 1 1 4 4 4 3 4Fe-4S double cluster binding domain Fer4_6 PF12837.7 gi|336255113|ref|YP_004598220.1| - 6.7e-07 29.1 38.0 0.00086 19.3 1.2 5.1 4 2 0 4 4 4 3 4Fe-4S binding domain Fer4_21 PF14697.6 gi|336255113|ref|YP_004598220.1| - 8.6e-07 29.0 26.4 1.3e-05 25.2 7.8 3.5 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|336255113|ref|YP_004598220.1| - 4.8e-06 26.9 21.6 0.00052 20.4 4.5 2.8 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|336255113|ref|YP_004598220.1| - 0.00027 21.7 41.8 0.049 14.6 5.1 4.3 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|336255113|ref|YP_004598220.1| - 0.0053 17.3 28.2 0.059 13.9 0.5 4.5 2 2 3 5 5 5 3 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|336255113|ref|YP_004598220.1| - 0.039 14.5 0.4 0.039 14.5 0.4 3.9 3 1 0 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|336255113|ref|YP_004598220.1| - 0.78 10.5 16.2 4.9 8.0 0.3 3.7 2 1 0 3 3 3 0 4Fe-4S single cluster domain Fer4_18 PF13746.6 gi|336255113|ref|YP_004598220.1| - 3 8.1 22.7 3.9 7.7 2.1 3.5 2 1 1 3 3 3 0 4Fe-4S dicluster domain Molybdopterin PF00384.22 gi|336255114|ref|YP_004598221.1| - 7.4e-52 176.7 2.0 1.2e-51 176.0 2.0 1.4 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|336255114|ref|YP_004598221.1| - 1.8e-19 69.8 0.1 1.1e-18 67.3 0.1 2.3 2 0 0 2 2 2 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|336255114|ref|YP_004598221.1| - 1.1e-12 47.8 0.2 2e-12 46.9 0.2 1.5 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain TAT_signal PF10518.9 gi|336255114|ref|YP_004598221.1| - 0.0034 17.2 1.9 0.0071 16.1 1.9 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Rieske_3 PF18465.1 gi|336255114|ref|YP_004598221.1| - 0.8 10.0 5.8 1.3 9.3 0.7 3.3 2 2 1 3 3 3 0 Rieske 3Fe-4S FlpD PF02662.16 gi|336255115|ref|YP_004598222.1| - 8.2e-26 90.4 0.0 3.8e-25 88.3 0.0 2.2 2 0 0 2 2 2 1 Methyl-viologen-reducing hydrogenase, delta subunit Fer4_7 PF12838.7 gi|336255115|ref|YP_004598222.1| - 2.5e-17 63.2 25.1 1.4e-07 32.0 9.3 5.6 5 0 0 5 5 5 4 4Fe-4S dicluster domain Fer4 PF00037.27 gi|336255115|ref|YP_004598222.1| - 1.9e-14 52.8 42.9 5.8e-06 25.9 1.1 7.3 7 0 0 7 7 7 5 4Fe-4S binding domain Fer4_16 PF13484.6 gi|336255115|ref|YP_004598222.1| - 2.9e-12 47.3 25.8 0.0013 19.6 0.5 6.7 6 0 0 6 6 6 3 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|336255115|ref|YP_004598222.1| - 1.7e-11 44.1 33.2 2.6e-06 27.5 9.0 5.0 5 0 0 5 5 5 3 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|336255115|ref|YP_004598222.1| - 2.1e-07 30.9 34.5 4.1e-05 23.6 6.4 5.3 3 2 1 5 5 5 4 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|336255115|ref|YP_004598222.1| - 3.3e-07 30.7 25.7 0.078 13.4 1.6 5.8 4 1 0 5 5 5 3 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|336255115|ref|YP_004598222.1| - 3.9e-07 30.1 41.0 4.4e-06 26.7 10.0 4.8 3 2 2 5 5 5 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|336255115|ref|YP_004598222.1| - 4.9e-07 29.5 51.2 1.9e-05 24.5 0.8 7.0 7 0 0 7 7 6 4 4Fe-4S binding domain Fer4_17 PF13534.6 gi|336255115|ref|YP_004598222.1| - 2.2e-06 28.1 25.9 0.035 14.7 0.1 6.0 4 1 2 6 6 6 4 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|336255115|ref|YP_004598222.1| - 0.00016 21.6 2.7 0.00016 21.6 2.7 6.8 7 0 0 7 7 6 4 4Fe-4S binding domain Fer4_4 PF12800.7 gi|336255115|ref|YP_004598222.1| - 0.0057 17.1 3.5 0.0057 17.1 3.5 6.4 7 0 0 7 7 6 3 4Fe-4S binding domain Fer4_18 PF13746.6 gi|336255115|ref|YP_004598222.1| - 0.022 15.0 25.9 0.027 14.7 1.4 4.4 4 1 0 4 4 4 0 4Fe-4S dicluster domain Nitrate_red_del PF02613.15 gi|336255116|ref|YP_004598223.1| - 5.6e-27 94.4 0.1 1e-26 93.6 0.1 1.4 1 0 0 1 1 1 1 Nitrate reductase delta subunit Phage_holin_3_6 PF07332.11 gi|336255119|ref|YP_004598226.1| - 0.057 13.5 4.3 0.076 13.1 4.3 1.1 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III DPM3 PF08285.11 gi|336255119|ref|YP_004598226.1| - 0.15 12.3 1.5 0.22 11.8 1.5 1.2 1 0 0 1 1 1 0 Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) OppC_N PF12911.7 gi|336255119|ref|YP_004598226.1| - 0.41 10.6 9.4 0.76 9.8 0.3 2.2 1 1 1 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C AFOR_C PF01314.18 gi|336255121|ref|YP_004598228.1| - 3.5e-99 332.4 0.0 4.9e-99 331.9 0.0 1.1 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|336255121|ref|YP_004598228.1| - 3.6e-64 216.3 0.1 5e-64 215.8 0.1 1.2 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain Glyco_transf_4 PF13439.6 gi|336255122|ref|YP_004598229.1| - 5.2e-19 68.9 1.3 8.4e-19 68.2 0.3 1.8 2 1 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|336255122|ref|YP_004598229.1| - 3.4e-17 63.3 5.4 3.4e-17 63.3 5.4 2.7 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glycos_transf_1 PF00534.20 gi|336255122|ref|YP_004598229.1| - 1.3e-11 44.3 0.0 2e-11 43.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|336255122|ref|YP_004598229.1| - 1.1e-10 42.1 0.0 5.8e-10 39.7 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|336255122|ref|YP_004598229.1| - 0.00059 19.9 0.0 0.0016 18.5 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferase 4-like Tctex-1 PF03645.13 gi|336255122|ref|YP_004598229.1| - 0.16 12.2 0.0 0.28 11.4 0.0 1.3 1 0 0 1 1 1 0 Tctex-1 family Peptidase_S9 PF00326.21 gi|336255124|ref|YP_004598231.1| - 2e-45 154.9 0.0 3.2e-45 154.2 0.0 1.4 1 0 0 1 1 1 1 Prolyl oligopeptidase family DLH PF01738.18 gi|336255124|ref|YP_004598231.1| - 4.9e-13 49.1 0.1 1.4e-12 47.7 0.1 1.6 1 1 0 1 1 1 1 Dienelactone hydrolase family Peptidase_S15 PF02129.18 gi|336255124|ref|YP_004598231.1| - 2.2e-11 43.9 0.0 1.8e-08 34.3 0.1 2.2 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_1 PF00561.20 gi|336255124|ref|YP_004598231.1| - 6.6e-11 42.3 0.1 2.2e-05 24.2 0.1 2.2 1 1 1 2 2 2 2 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|336255124|ref|YP_004598231.1| - 2.2e-08 33.6 0.2 0.00085 18.7 0.1 2.5 2 1 1 3 3 3 2 Serine aminopeptidase, S33 PD40 PF07676.12 gi|336255124|ref|YP_004598231.1| - 2.9e-06 27.0 5.5 0.0059 16.5 0.0 5.5 5 0 0 5 5 5 1 WD40-like Beta Propeller Repeat Peptidase_S9_N PF02897.15 gi|336255124|ref|YP_004598231.1| - 0.00014 20.8 0.0 0.00023 20.1 0.0 1.3 1 0 0 1 1 1 1 Prolyl oligopeptidase, N-terminal beta-propeller domain AXE1 PF05448.12 gi|336255124|ref|YP_004598231.1| - 0.00027 19.7 0.0 0.0097 14.6 0.0 2.1 1 1 0 1 1 1 1 Acetyl xylan esterase (AXE1) Abhydrolase_3 PF07859.13 gi|336255124|ref|YP_004598231.1| - 0.00091 19.1 0.0 0.032 14.1 0.0 2.2 1 1 0 1 1 1 1 alpha/beta hydrolase fold BAAT_C PF08840.11 gi|336255124|ref|YP_004598231.1| - 0.00096 19.1 0.0 0.016 15.2 0.0 2.1 1 1 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal PepSY_2 PF13670.6 gi|336255124|ref|YP_004598231.1| - 0.0017 18.3 0.1 0.22 11.5 0.0 2.6 2 0 0 2 2 2 1 Peptidase propeptide and YPEB domain Abhydrolase_2 PF02230.16 gi|336255124|ref|YP_004598231.1| - 0.012 15.5 0.0 3.6 7.3 0.0 2.2 2 0 0 2 2 2 0 Phospholipase/Carboxylesterase Esterase PF00756.20 gi|336255124|ref|YP_004598231.1| - 0.042 13.5 0.0 0.19 11.3 0.0 2.1 2 0 0 2 2 2 0 Putative esterase Abhydrolase_4 PF08386.10 gi|336255124|ref|YP_004598231.1| - 0.046 13.8 0.0 0.12 12.5 0.0 1.6 1 0 0 1 1 1 0 TAP-like protein DUF829 PF05705.14 gi|336255124|ref|YP_004598231.1| - 0.22 11.4 0.0 0.39 10.6 0.0 1.3 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF829) ABC_tran PF00005.27 gi|336255125|ref|YP_004598232.1| - 1.9e-27 96.4 0.0 3.2e-27 95.7 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|336255125|ref|YP_004598232.1| - 1.5e-11 44.6 0.0 7.5e-08 32.5 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_30 PF13604.6 gi|336255125|ref|YP_004598232.1| - 0.0014 18.4 0.0 0.003 17.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|336255125|ref|YP_004598232.1| - 0.012 15.5 0.0 0.021 14.7 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_23 PF13476.6 gi|336255125|ref|YP_004598232.1| - 0.014 15.9 0.0 0.025 15.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|336255125|ref|YP_004598232.1| - 0.035 14.5 0.0 0.097 13.1 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain AAA_29 PF13555.6 gi|336255125|ref|YP_004598232.1| - 0.082 12.7 0.0 0.17 11.6 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_27 PF13514.6 gi|336255125|ref|YP_004598232.1| - 0.18 11.4 0.0 1.2 8.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain ABC2_membrane_2 PF12679.7 gi|336255126|ref|YP_004598233.1| - 2.8e-40 138.4 14.5 2.5e-39 135.3 14.5 1.9 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|336255126|ref|YP_004598233.1| - 1.2e-11 44.9 3.6 1.2e-11 44.9 3.6 1.4 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|336255126|ref|YP_004598233.1| - 1.3e-10 41.2 6.1 3.9e-10 39.6 6.2 1.7 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|336255126|ref|YP_004598233.1| - 8e-09 35.0 12.0 8e-09 35.0 12.0 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|336255126|ref|YP_004598233.1| - 1.3e-05 24.7 13.6 2.3e-05 23.9 13.6 1.4 1 0 0 1 1 1 1 ABC-2 type transporter DUF872 PF05915.12 gi|336255126|ref|YP_004598233.1| - 0.22 11.7 2.7 0.52 10.5 2.7 1.6 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF872) DUF4293 PF14126.6 gi|336255126|ref|YP_004598233.1| - 0.97 9.7 4.1 2 8.6 0.3 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4293) Nitrate_red_del PF02613.15 gi|336255130|ref|YP_004598237.1| - 2e-28 99.1 0.1 2.7e-28 98.7 0.1 1.2 1 0 0 1 1 1 1 Nitrate reductase delta subunit FlpD PF02662.16 gi|336255131|ref|YP_004598238.1| - 5.2e-25 87.8 0.0 1.6e-24 86.2 0.0 1.9 1 0 0 1 1 1 1 Methyl-viologen-reducing hydrogenase, delta subunit Fer4 PF00037.27 gi|336255131|ref|YP_004598238.1| - 3.1e-13 48.9 51.2 1.3e-05 24.7 2.4 7.7 8 0 0 8 8 8 6 4Fe-4S binding domain Fer4_7 PF12838.7 gi|336255131|ref|YP_004598238.1| - 3.5e-13 49.9 44.0 2e-07 31.5 11.6 6.5 5 3 3 8 8 7 6 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|336255131|ref|YP_004598238.1| - 7.1e-12 46.1 30.2 0.0003 21.6 0.3 7.4 8 0 0 8 8 7 4 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|336255131|ref|YP_004598238.1| - 2.7e-11 43.5 42.0 3.6e-06 27.0 10.4 5.5 7 0 0 7 7 6 3 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|336255131|ref|YP_004598238.1| - 6.5e-09 35.8 32.3 0.00022 21.3 8.0 5.3 4 1 1 5 5 5 4 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|336255131|ref|YP_004598238.1| - 3.6e-07 30.5 21.8 0.0053 17.2 0.4 5.9 5 0 0 5 5 5 2 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|336255131|ref|YP_004598238.1| - 4.1e-07 30.0 45.0 2e-05 24.6 11.3 5.2 5 1 0 5 5 4 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|336255131|ref|YP_004598238.1| - 2.2e-06 27.5 11.6 1.2e-05 25.2 2.2 7.9 8 0 0 8 8 7 3 4Fe-4S binding domain Fer4_2 PF12797.7 gi|336255131|ref|YP_004598238.1| - 0.00056 19.8 3.3 0.00056 19.8 3.3 7.7 9 0 0 9 9 8 3 4Fe-4S binding domain Fer4_17 PF13534.6 gi|336255131|ref|YP_004598238.1| - 0.0044 17.5 33.6 0.016 15.7 0.3 5.9 5 1 1 6 6 6 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|336255131|ref|YP_004598238.1| - 0.0044 17.4 4.7 0.0044 17.4 4.7 6.4 8 0 0 8 8 4 3 4Fe-4S binding domain Fer4_18 PF13746.6 gi|336255131|ref|YP_004598238.1| - 0.014 15.6 21.3 0.11 12.7 3.8 4.4 5 0 0 5 5 4 0 4Fe-4S dicluster domain YidD PF01809.18 gi|336255131|ref|YP_004598238.1| - 0.067 13.1 0.6 0.33 10.8 0.3 2.1 2 0 0 2 2 2 0 Putative membrane protein insertion efficiency factor Fer4_11 PF13247.6 gi|336255131|ref|YP_004598238.1| - 0.38 10.9 19.2 0.34 11.1 1.8 3.7 4 0 0 4 4 3 0 4Fe-4S dicluster domain Molybdopterin PF00384.22 gi|336255132|ref|YP_004598239.1| - 1.7e-48 165.7 2.7 8.7e-48 163.3 2.7 1.9 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|336255132|ref|YP_004598239.1| - 2.9e-16 59.5 0.0 8.5e-16 58.0 0.0 1.8 2 0 0 2 2 2 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|336255132|ref|YP_004598239.1| - 2.2e-10 40.4 0.2 4.5e-10 39.4 0.2 1.6 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain TAT_signal PF10518.9 gi|336255132|ref|YP_004598239.1| - 0.069 13.0 1.9 0.17 11.8 1.9 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Rieske_3 PF18465.1 gi|336255132|ref|YP_004598239.1| - 0.083 13.2 1.3 0.9 9.8 0.2 2.8 2 0 0 2 2 2 0 Rieske 3Fe-4S Prothymosin PF03247.14 gi|336255132|ref|YP_004598239.1| - 0.44 11.0 13.9 1.8 9.1 13.9 2.0 1 0 0 1 1 1 0 Prothymosin/parathymosin family Fer4_11 PF13247.6 gi|336255133|ref|YP_004598240.1| - 2.4e-18 66.1 11.4 2.4e-18 66.1 11.4 2.2 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|336255133|ref|YP_004598240.1| - 1.6e-15 57.4 22.1 9.4e-08 32.5 6.5 2.4 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|336255133|ref|YP_004598240.1| - 7.4e-13 48.4 55.2 3.1e-06 27.3 8.8 3.2 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4 PF00037.27 gi|336255133|ref|YP_004598240.1| - 1.6e-08 34.0 40.4 2.8e-05 23.7 1.6 5.5 6 0 0 6 6 6 3 4Fe-4S binding domain Fer4_21 PF14697.6 gi|336255133|ref|YP_004598240.1| - 4e-08 33.3 26.1 5.5e-06 26.4 8.2 3.7 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|336255133|ref|YP_004598240.1| - 8.3e-08 32.0 39.0 0.00036 20.5 1.1 5.4 4 2 0 4 4 4 3 4Fe-4S binding domain Fer4_10 PF13237.6 gi|336255133|ref|YP_004598240.1| - 7.6e-07 29.2 30.1 0.00077 19.5 9.0 3.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|336255133|ref|YP_004598240.1| - 7.7e-07 28.8 33.2 0.0038 17.2 1.1 4.3 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_16 PF13484.6 gi|336255133|ref|YP_004598240.1| - 9e-06 26.5 22.2 0.017 16.0 1.0 4.6 3 1 0 4 4 4 3 4Fe-4S double cluster binding domain Fer4_8 PF13183.6 gi|336255133|ref|YP_004598240.1| - 1.6e-05 25.2 22.0 0.00097 19.5 6.0 2.7 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|336255133|ref|YP_004598240.1| - 0.00026 21.3 31.2 0.048 14.2 2.2 4.5 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|336255133|ref|YP_004598240.1| - 0.007 17.2 41.9 0.056 14.4 5.9 4.3 4 0 0 4 4 4 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|336255133|ref|YP_004598240.1| - 0.058 13.9 27.8 0.069 13.7 8.5 4.0 1 1 4 5 5 5 0 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|336255133|ref|YP_004598240.1| - 0.13 12.8 0.5 0.13 12.8 0.5 4.5 2 1 1 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|336255133|ref|YP_004598240.1| - 2 8.7 20.3 7.3 6.8 1.7 3.3 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|336255133|ref|YP_004598240.1| - 3.6 8.4 22.5 3.8 8.3 0.5 4.3 2 1 1 3 3 3 0 4Fe-4S single cluster domain SPX PF03105.19 gi|336255134|ref|YP_004598241.1| - 0.011 15.6 1.4 0.012 15.5 1.4 1.3 1 0 0 1 1 1 0 SPX domain Ni_hydr_CYTB PF01292.20 gi|336255135|ref|YP_004598242.1| - 9.9e-20 70.9 16.0 2e-19 69.9 11.9 2.0 2 0 0 2 2 2 1 Prokaryotic cytochrome b561 DUF3094 PF11293.8 gi|336255135|ref|YP_004598242.1| - 0.03 14.0 0.0 0.094 12.5 0.0 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF3094) PepSY_TM PF03929.16 gi|336255135|ref|YP_004598242.1| - 3.7 7.1 20.8 97 2.5 18.0 3.5 3 1 0 3 3 3 0 PepSY-associated TM region Metal_resist PF13801.6 gi|336255136|ref|YP_004598243.1| - 2.7 8.2 4.4 1.8 8.8 2.8 1.5 1 1 1 2 2 2 0 Heavy-metal resistance YjbE PF11106.8 gi|336255136|ref|YP_004598243.1| - 4.4 7.6 9.1 0.18 12.0 3.5 1.5 2 0 0 2 2 2 0 Exopolysaccharide production protein YjbE Fe-ADH_2 PF13685.6 gi|336255137|ref|YP_004598244.1| - 2.5e-61 207.6 2.0 3.1e-61 207.3 2.0 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.19 gi|336255137|ref|YP_004598244.1| - 2.2e-21 76.1 6.2 7.1e-21 74.4 6.2 1.6 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.20 gi|336255137|ref|YP_004598244.1| - 1.4e-07 30.9 0.1 3.8e-07 29.5 0.1 1.6 1 1 0 1 1 1 1 3-dehydroquinate synthase adh_short_C2 PF13561.6 gi|336255138|ref|YP_004598245.1| - 5.4e-63 212.7 2.2 6.5e-63 212.4 2.2 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|336255138|ref|YP_004598245.1| - 7.6e-49 165.8 0.6 1e-48 165.4 0.6 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|336255138|ref|YP_004598245.1| - 3e-15 56.6 0.7 4e-15 56.2 0.7 1.1 1 0 0 1 1 1 1 KR domain 2-Hacid_dh_C PF02826.19 gi|336255138|ref|YP_004598245.1| - 0.0067 15.8 0.1 0.01 15.2 0.1 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|336255138|ref|YP_004598245.1| - 0.0072 16.9 2.3 0.049 14.2 1.3 2.6 1 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Sacchrp_dh_NADP PF03435.18 gi|336255138|ref|YP_004598245.1| - 0.025 14.8 0.2 0.039 14.2 0.2 1.4 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain NmrA PF05368.13 gi|336255138|ref|YP_004598245.1| - 0.027 14.0 0.7 0.038 13.6 0.7 1.2 1 0 0 1 1 1 0 NmrA-like family RmlD_sub_bind PF04321.17 gi|336255138|ref|YP_004598245.1| - 0.071 12.2 0.2 0.1 11.7 0.2 1.3 1 0 0 1 1 1 0 RmlD substrate binding domain Pam16 PF03656.13 gi|336255138|ref|YP_004598245.1| - 0.11 12.5 1.4 3.4 7.7 0.3 2.3 2 0 0 2 2 2 0 Pam16 THF_DHG_CYH_C PF02882.19 gi|336255138|ref|YP_004598245.1| - 0.14 11.5 0.1 0.73 9.1 0.0 1.9 2 0 0 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 3HCDH_N PF02737.18 gi|336255138|ref|YP_004598245.1| - 0.15 12.0 0.5 0.25 11.2 0.5 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain MatE PF01554.18 gi|336255139|ref|YP_004598246.1| - 3.3e-44 150.4 25.4 4.7e-25 88.1 7.4 2.7 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.6 gi|336255139|ref|YP_004598246.1| - 2.3e-10 40.7 4.6 2.3e-10 40.7 4.6 4.3 4 1 0 4 4 4 2 Polysaccharide biosynthesis C-terminal domain MurJ PF03023.14 gi|336255139|ref|YP_004598246.1| - 2.7e-10 39.4 6.9 1.5e-08 33.7 2.0 2.8 2 1 0 2 2 2 2 Lipid II flippase MurJ Regulator_TrmB PF11495.8 gi|336255140|ref|YP_004598247.1| - 0.11 11.6 0.2 0.49 9.5 0.1 1.8 2 0 0 2 2 2 0 Archaeal transcriptional regulator TrmB MR_MLE_C PF13378.6 gi|336255141|ref|YP_004598248.1| - 1e-60 205.1 1.4 1.4e-60 204.6 1.4 1.2 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|336255141|ref|YP_004598248.1| - 5.5e-16 58.8 0.0 1e-15 58.0 0.0 1.4 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Aldedh PF00171.22 gi|336255142|ref|YP_004598249.1| - 5.7e-164 546.0 2.1 6.5e-164 545.8 2.1 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family FAA_hydrolase PF01557.18 gi|336255143|ref|YP_004598250.1| - 9.1e-24 84.3 0.1 2.1e-22 79.9 0.1 2.4 1 1 1 2 2 2 1 Fumarylacetoacetate (FAA) hydrolase family SBP_bac_5 PF00496.22 gi|336255144|ref|YP_004598251.1| - 3.2e-25 88.9 1.4 2.2e-24 86.1 1.4 2.1 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.9 gi|336255144|ref|YP_004598251.1| - 1.2 9.1 7.0 1.8 8.5 7.0 1.3 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence GFO_IDH_MocA PF01408.22 gi|336255145|ref|YP_004598252.1| - 4.4e-20 72.7 0.3 9.9e-20 71.6 0.3 1.6 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|336255145|ref|YP_004598252.1| - 0.00011 22.2 0.0 0.00028 20.9 0.0 1.7 2 0 0 2 2 2 1 Oxidoreductase family, C-terminal alpha/beta domain Semialdhyde_dh PF01118.24 gi|336255145|ref|YP_004598252.1| - 0.006 17.0 0.1 0.012 16.1 0.1 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Shikimate_DH PF01488.20 gi|336255145|ref|YP_004598252.1| - 0.16 12.1 0.1 0.4 10.7 0.0 1.7 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase ABC_tran PF00005.27 gi|336255146|ref|YP_004598253.1| - 1.8e-23 83.5 0.0 2.6e-23 83.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|336255146|ref|YP_004598253.1| - 6.3e-18 65.1 0.1 1.2e-17 64.1 0.1 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|336255146|ref|YP_004598253.1| - 3.2e-09 37.0 0.2 5.8e-07 29.6 0.2 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|336255146|ref|YP_004598253.1| - 1.4e-05 24.6 0.3 0.032 13.7 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|336255146|ref|YP_004598253.1| - 0.00013 22.3 0.2 0.29 11.4 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.6 gi|336255146|ref|YP_004598253.1| - 0.00093 18.9 0.1 0.002 17.8 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|336255146|ref|YP_004598253.1| - 0.026 14.9 0.0 0.058 13.8 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain TniB PF05621.11 gi|336255146|ref|YP_004598253.1| - 0.032 13.7 0.1 1.1 8.6 0.0 2.3 2 0 0 2 2 2 0 Bacterial TniB protein AAA_25 PF13481.6 gi|336255146|ref|YP_004598253.1| - 0.033 13.8 0.0 0.22 11.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|336255146|ref|YP_004598253.1| - 0.049 13.4 0.0 0.56 9.9 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein DUF87 PF01935.17 gi|336255146|ref|YP_004598253.1| - 0.073 13.2 0.0 0.15 12.1 0.0 1.5 1 0 0 1 1 1 0 Helicase HerA, central domain NACHT PF05729.12 gi|336255146|ref|YP_004598253.1| - 0.11 12.4 0.0 0.18 11.7 0.0 1.3 1 0 0 1 1 1 0 NACHT domain ATPase PF06745.13 gi|336255146|ref|YP_004598253.1| - 0.23 10.8 0.0 1.7 7.9 0.0 2.0 2 0 0 2 2 2 0 KaiC ABC_tran PF00005.27 gi|336255147|ref|YP_004598254.1| - 3.8e-28 98.7 0.0 5.5e-28 98.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|336255147|ref|YP_004598254.1| - 1.1e-15 57.9 0.5 2.2e-15 56.9 0.5 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|336255147|ref|YP_004598254.1| - 7.4e-05 22.7 2.0 0.072 12.9 0.2 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|336255147|ref|YP_004598254.1| - 0.00036 20.8 0.2 0.0019 18.5 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|336255147|ref|YP_004598254.1| - 0.017 14.9 0.2 0.034 13.9 0.2 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|336255147|ref|YP_004598254.1| - 0.084 12.8 0.0 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_24 PF13479.6 gi|336255147|ref|YP_004598254.1| - 0.11 12.3 0.0 0.15 11.8 0.0 1.2 1 0 0 1 1 1 0 AAA domain TsaE PF02367.17 gi|336255147|ref|YP_004598254.1| - 0.11 12.5 0.0 0.2 11.7 0.0 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE NB-ARC PF00931.22 gi|336255147|ref|YP_004598254.1| - 0.12 11.5 0.0 0.18 11.0 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain Sensor PF13796.6 gi|336255149|ref|YP_004598256.1| - 0.088 12.8 6.9 0.11 12.5 6.9 1.1 1 0 0 1 1 1 0 Putative sensor DUF3561 PF12084.8 gi|336255149|ref|YP_004598256.1| - 0.3 11.1 8.0 3.7 7.6 3.4 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3561) DUF2207 PF09972.9 gi|336255149|ref|YP_004598256.1| - 0.35 9.6 5.8 0.4 9.4 5.8 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Glyco_hydro_67M PF07488.12 gi|336255150|ref|YP_004598257.1| - 4.9e-134 446.5 0.0 6.1e-134 446.2 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolase family 67 middle domain Glyco_hydro_67C PF07477.12 gi|336255150|ref|YP_004598257.1| - 1.2e-83 280.1 0.0 1.8e-83 279.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase family 67 C-terminus Glyco_hydro_67N PF03648.14 gi|336255150|ref|YP_004598257.1| - 1.1e-26 93.5 0.0 1.7e-26 92.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase family 67 N-terminus DUF4838 PF16126.5 gi|336255150|ref|YP_004598257.1| - 0.19 11.1 0.0 0.31 10.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4838) Glyco_hydro_10 PF00331.20 gi|336255151|ref|YP_004598258.1| - 2.2e-35 122.3 0.7 2.2e-35 122.3 0.7 1.5 2 0 0 2 2 2 1 Glycosyl hydrolase family 10 CarboxypepD_reg PF13620.6 gi|336255151|ref|YP_004598258.1| - 0.00052 20.2 1.1 0.62 10.4 0.4 2.5 2 0 0 2 2 2 2 Carboxypeptidase regulatory-like domain Big_3 PF07523.12 gi|336255151|ref|YP_004598258.1| - 0.0018 18.5 3.8 0.13 12.6 0.9 2.8 2 0 0 2 2 2 2 Bacterial Ig-like domain (group 3) Invasin_D3 PF09134.10 gi|336255151|ref|YP_004598258.1| - 0.0099 16.2 1.6 0.3 11.4 0.0 2.6 2 0 0 2 2 2 1 Invasin, domain 3 Big_1 PF02369.16 gi|336255151|ref|YP_004598258.1| - 0.15 12.1 0.0 0.15 12.1 0.0 3.0 3 0 0 3 3 3 0 Bacterial Ig-like domain (group 1) bMG6 PF17962.1 gi|336255151|ref|YP_004598258.1| - 0.17 12.1 0.1 0.17 12.1 0.1 2.7 3 0 0 3 3 3 0 Bacterial macroglobulin domain 6 TipAS PF07739.13 gi|336255151|ref|YP_004598258.1| - 4.8 7.8 7.3 1.8 9.1 0.3 2.8 3 0 0 3 3 3 0 TipAS antibiotic-recognition domain Cytomega_UL20A PF05984.12 gi|336255151|ref|YP_004598258.1| - 5.8 7.3 9.9 5.2 7.4 7.2 2.4 2 0 0 2 2 2 0 Cytomegalovirus UL20A protein Glyco_hydro_10 PF00331.20 gi|336255152|ref|YP_004598259.1| - 1.3e-99 333.3 0.0 1.5e-99 333.2 0.0 1.0 1 0 0 1 1 1 1 Glycosyl hydrolase family 10 Cellulase PF00150.18 gi|336255152|ref|YP_004598259.1| - 0.0023 17.4 0.6 0.17 11.3 0.4 2.4 2 1 0 2 2 2 1 Cellulase (glycosyl hydrolase family 5) AP_endonuc_2 PF01261.24 gi|336255152|ref|YP_004598259.1| - 0.0051 16.3 0.0 0.013 14.9 0.0 1.7 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel Choline_sulf_C PF12411.8 gi|336255152|ref|YP_004598259.1| - 0.064 13.1 0.4 0.16 11.8 0.4 1.7 1 0 0 1 1 1 0 Choline sulfatase enzyme C terminal LapA_dom PF06305.11 gi|336255153|ref|YP_004598260.1| - 0.0044 16.8 0.1 0.016 15.0 0.0 1.8 2 0 0 2 2 2 1 Lipopolysaccharide assembly protein A domain DUF202 PF02656.15 gi|336255153|ref|YP_004598260.1| - 0.22 12.0 2.6 0.56 10.7 2.6 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF202) Bac_luciferase PF00296.20 gi|336255154|ref|YP_004598261.1| - 4.5e-66 223.4 5.5 5.4e-66 223.1 5.5 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase Radical_SAM PF04055.21 gi|336255154|ref|YP_004598261.1| - 0.12 12.8 1.2 0.74 10.2 0.7 2.4 2 2 0 2 2 2 0 Radical SAM superfamily UxaC PF02614.14 gi|336255155|ref|YP_004598262.1| - 2.4e-146 488.2 0.0 2.8e-146 488.1 0.0 1.0 1 0 0 1 1 1 1 Glucuronate isomerase Glyco_hydro_11 PF00457.17 gi|336255156|ref|YP_004598263.1| - 7.2e-76 253.8 13.6 7.2e-76 253.8 13.6 2.3 2 1 0 2 2 2 1 Glycosyl hydrolases family 11 RicinB_lectin_2 PF14200.6 gi|336255156|ref|YP_004598263.1| - 2.4e-39 133.9 21.5 3.9e-25 88.4 6.3 3.9 3 2 0 4 4 4 2 Ricin-type beta-trefoil lectin domain-like Ricin_B_lectin PF00652.22 gi|336255156|ref|YP_004598263.1| - 3.5e-20 72.5 2.1 9.5e-14 51.7 0.1 2.5 1 1 1 2 2 2 2 Ricin-type beta-trefoil lectin domain TAT_signal PF10518.9 gi|336255156|ref|YP_004598263.1| - 0.091 12.6 0.2 0.091 12.6 0.2 1.9 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence Glyco_hydro_3 PF00933.21 gi|336255157|ref|YP_004598264.1| - 6.1e-78 262.4 0.0 8.2e-78 262.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain Glyco_hydro_3_C PF01915.22 gi|336255157|ref|YP_004598264.1| - 8.5e-54 182.6 0.2 1.9e-53 181.4 0.2 1.6 2 0 0 2 2 2 1 Glycosyl hydrolase family 3 C-terminal domain Fn3-like PF14310.6 gi|336255157|ref|YP_004598264.1| - 4.4e-18 65.1 0.0 1.9e-17 63.1 0.0 2.2 2 0 0 2 2 2 1 Fibronectin type III-like domain BPD_transp_1 PF00528.22 gi|336255158|ref|YP_004598265.1| - 1.9e-54 184.2 33.4 1e-30 106.9 10.1 3.3 2 1 1 3 3 3 2 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|336255158|ref|YP_004598265.1| - 0.0048 16.8 2.6 0.31 11.1 0.1 3.9 3 0 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C TPR_19 PF14559.6 gi|336255158|ref|YP_004598265.1| - 0.024 15.1 0.0 0.079 13.5 0.0 1.8 2 0 0 2 2 2 0 Tetratricopeptide repeat Gp37 PF09646.10 gi|336255158|ref|YP_004598265.1| - 0.11 12.3 0.1 0.19 11.6 0.1 1.4 1 0 0 1 1 1 0 Gp37 protein Glyco_hydro_4 PF02056.16 gi|336255159|ref|YP_004598266.1| - 5.5e-42 143.4 0.0 8.1e-42 142.8 0.0 1.2 1 0 0 1 1 1 1 Family 4 glycosyl hydrolase Glyco_hydro_4C PF11975.8 gi|336255159|ref|YP_004598266.1| - 2.7e-41 142.0 0.0 3.9e-41 141.4 0.0 1.3 1 0 0 1 1 1 1 Family 4 glycosyl hydrolase C-terminal domain UDPG_MGDP_dh_C PF03720.15 gi|336255159|ref|YP_004598266.1| - 0.0084 16.5 0.1 0.03 14.8 0.0 1.9 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Ribonuc_red_sm PF00268.21 gi|336255159|ref|YP_004598266.1| - 0.021 14.3 0.1 5.2 6.4 0.0 2.2 2 0 0 2 2 2 0 Ribonucleotide reductase, small chain Ldh_1_N PF00056.23 gi|336255159|ref|YP_004598266.1| - 0.044 13.9 0.0 0.78 9.8 0.0 2.5 3 0 0 3 3 3 0 lactate/malate dehydrogenase, NAD binding domain Usp PF00582.26 gi|336255160|ref|YP_004598267.1| - 1e-12 48.8 0.3 2.9e-12 47.3 0.3 1.6 1 1 0 1 1 1 1 Universal stress protein family DUF1464 PF07318.12 gi|336255160|ref|YP_004598267.1| - 0.015 14.5 0.0 0.015 14.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1464) BPD_transp_1 PF00528.22 gi|336255161|ref|YP_004598268.1| - 1e-21 77.5 17.8 1e-21 77.5 17.8 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF2208 PF09973.9 gi|336255161|ref|YP_004598268.1| - 1.3 8.6 5.8 1.9 8.0 0.0 2.9 3 0 0 3 3 3 0 Predicted membrane protein (DUF2208) BPD_transp_1 PF00528.22 gi|336255162|ref|YP_004598269.1| - 1.1e-17 64.3 19.1 1.1e-17 64.3 19.1 2.5 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_8 PF13416.6 gi|336255163|ref|YP_004598270.1| - 4.8e-23 82.4 7.5 4.8e-23 82.4 7.5 1.5 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|336255163|ref|YP_004598270.1| - 8.9e-19 68.6 5.3 1.6e-18 67.8 5.3 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.9 gi|336255163|ref|YP_004598270.1| - 0.0001 22.0 2.2 0.0002 21.1 2.2 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Cpn60_TCP1 PF00118.24 gi|336255165|ref|YP_004598272.1| - 8.9e-89 298.3 0.0 1e-88 298.2 0.0 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family PT-VENN PF04829.13 gi|336255166|ref|YP_004598273.1| - 0.067 13.3 1.1 0.067 13.3 1.1 2.1 3 0 0 3 3 3 0 Pre-toxin domain with VENN motif ABC_tran PF00005.27 gi|336255167|ref|YP_004598274.1| - 2.2e-30 105.9 0.0 5.4e-30 104.7 0.0 1.6 2 0 0 2 2 2 1 ABC transporter OB_MalK PF17912.1 gi|336255167|ref|YP_004598274.1| - 8.7e-10 39.3 0.1 3.1e-09 37.5 0.1 2.0 1 0 0 1 1 1 1 MalK OB fold domain AAA_21 PF13304.6 gi|336255167|ref|YP_004598274.1| - 4.2e-08 33.4 0.3 0.0063 16.4 0.0 2.9 2 1 1 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE_2 PF08402.10 gi|336255167|ref|YP_004598274.1| - 5e-06 26.6 0.5 9.6e-05 22.5 0.5 2.7 1 1 0 1 1 1 1 TOBE domain AAA_22 PF13401.6 gi|336255167|ref|YP_004598274.1| - 0.00077 19.7 0.1 0.002 18.4 0.0 1.8 1 1 1 2 2 2 1 AAA domain SMC_N PF02463.19 gi|336255167|ref|YP_004598274.1| - 0.00081 18.9 0.1 0.62 9.5 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|336255167|ref|YP_004598274.1| - 0.00089 19.0 0.0 0.0022 17.7 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain CysA_C_terminal PF17850.1 gi|336255167|ref|YP_004598274.1| - 0.0016 19.0 0.3 0.088 13.4 0.1 2.7 2 0 0 2 2 2 1 CysA C-terminal regulatory domain AAA_16 PF13191.6 gi|336255167|ref|YP_004598274.1| - 0.0019 18.6 0.3 0.0053 17.2 0.3 1.8 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|336255167|ref|YP_004598274.1| - 0.0033 17.3 0.0 0.0064 16.4 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_33 PF13671.6 gi|336255167|ref|YP_004598274.1| - 0.028 14.6 0.2 0.12 12.6 0.1 1.9 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.6 gi|336255167|ref|YP_004598274.1| - 0.031 14.0 0.2 2 8.0 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain AAA_30 PF13604.6 gi|336255167|ref|YP_004598274.1| - 0.06 13.1 0.0 0.11 12.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain Cytidylate_kin PF02224.18 gi|336255167|ref|YP_004598274.1| - 0.075 12.8 0.1 0.64 9.7 0.0 2.1 2 0 0 2 2 2 0 Cytidylate kinase AAA_25 PF13481.6 gi|336255167|ref|YP_004598274.1| - 0.11 12.1 0.1 0.55 9.8 0.1 2.0 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|336255167|ref|YP_004598274.1| - 0.12 12.8 0.1 0.41 11.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.22 gi|336255167|ref|YP_004598274.1| - 0.25 10.5 0.4 0.45 9.7 0.0 1.5 2 0 0 2 2 2 0 NB-ARC domain AP_endonuc_2 PF01261.24 gi|336255168|ref|YP_004598275.1| - 3.4e-34 118.2 0.7 4.5e-34 117.7 0.7 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel AP_endonuc_2_N PF07582.12 gi|336255168|ref|YP_004598275.1| - 2.3e-20 72.1 0.1 4.9e-20 71.0 0.1 1.6 1 0 0 1 1 1 1 AP endonuclease family 2 C terminus GFO_IDH_MocA PF01408.22 gi|336255169|ref|YP_004598276.1| - 1.3e-18 68.0 0.3 2.3e-18 67.1 0.1 1.5 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|336255169|ref|YP_004598276.1| - 3.8e-05 23.7 0.0 6.9e-05 22.8 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain IlvN PF07991.12 gi|336255169|ref|YP_004598276.1| - 0.025 14.1 0.0 0.041 13.4 0.0 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain Aldedh PF00171.22 gi|336255170|ref|YP_004598277.1| - 6.5e-164 545.8 4.4 7.3e-164 545.6 4.4 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family SBP_bac_5 PF00496.22 gi|336255171|ref|YP_004598278.1| - 1.9e-21 76.4 6.4 2.4e-20 72.9 6.4 2.2 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Baseplate PF16774.5 gi|336255171|ref|YP_004598278.1| - 0.061 13.2 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 Baseplate protein FAA_hydrolase PF01557.18 gi|336255172|ref|YP_004598279.1| - 2e-23 83.2 0.1 3e-22 79.4 0.1 2.1 1 1 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family IclR PF01614.18 gi|336255173|ref|YP_004598280.1| - 6.7e-39 132.7 0.0 9.9e-39 132.1 0.0 1.3 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|336255173|ref|YP_004598280.1| - 9.9e-13 47.7 0.0 3.2e-12 46.0 0.0 1.9 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|336255173|ref|YP_004598280.1| - 1.3e-05 24.7 0.0 2.3e-05 23.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|336255173|ref|YP_004598280.1| - 3.9e-05 23.5 0.0 6.8e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|336255173|ref|YP_004598280.1| - 0.00012 22.5 0.0 0.00027 21.4 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_5 PF01022.20 gi|336255173|ref|YP_004598280.1| - 0.0016 18.3 0.0 0.0029 17.5 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|336255173|ref|YP_004598280.1| - 0.0033 17.5 0.0 0.007 16.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_45 PF14947.6 gi|336255173|ref|YP_004598280.1| - 0.0042 17.0 0.1 0.011 15.6 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix TrmB PF01978.19 gi|336255173|ref|YP_004598280.1| - 0.0052 16.6 0.0 0.017 15.0 0.0 1.8 2 0 0 2 2 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|336255173|ref|YP_004598280.1| - 0.011 15.6 0.0 0.022 14.6 0.0 1.4 1 0 0 1 1 1 0 MarR family Fe_dep_repress PF01325.19 gi|336255173|ref|YP_004598280.1| - 0.012 15.8 0.0 0.039 14.1 0.0 1.8 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain LexA_DNA_bind PF01726.16 gi|336255173|ref|YP_004598280.1| - 0.067 13.0 0.0 0.13 12.0 0.0 1.5 1 0 0 1 1 1 0 LexA DNA binding domain HTH_40 PF14493.6 gi|336255173|ref|YP_004598280.1| - 0.075 13.5 0.2 0.2 12.2 0.1 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_11 PF08279.12 gi|336255173|ref|YP_004598280.1| - 0.084 12.8 0.0 0.17 11.9 0.0 1.5 1 0 0 1 1 1 0 HTH domain UPF0122 PF04297.14 gi|336255173|ref|YP_004598280.1| - 0.098 12.9 0.0 0.25 11.6 0.0 1.6 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_10 PF04967.12 gi|336255173|ref|YP_004598280.1| - 0.1 12.4 0.0 0.25 11.2 0.0 1.7 1 0 0 1 1 1 0 HTH DNA binding domain Peripla_BP_4 PF13407.6 gi|336255174|ref|YP_004598281.1| - 1.4e-44 152.6 3.1 1.8e-44 152.3 3.1 1.1 1 0 0 1 1 1 1 Periplasmic binding protein domain Peripla_BP_1 PF00532.21 gi|336255174|ref|YP_004598281.1| - 8.2e-09 35.3 0.1 1.1e-08 34.9 0.1 1.1 1 0 0 1 1 1 1 Periplasmic binding proteins and sugar binding domain of LacI family TAT_signal PF10518.9 gi|336255174|ref|YP_004598281.1| - 0.026 14.3 0.1 0.054 13.4 0.1 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence ABC_tran PF00005.27 gi|336255175|ref|YP_004598282.1| - 4e-34 118.1 0.0 6.1e-34 117.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|336255175|ref|YP_004598282.1| - 2.8e-11 43.8 0.2 5.5e-06 26.4 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|336255175|ref|YP_004598282.1| - 1.6e-05 24.4 0.1 0.0018 17.7 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain ABC_ATPase PF09818.9 gi|336255175|ref|YP_004598282.1| - 0.00025 20.0 2.5 0.039 12.7 0.5 3.0 2 1 0 2 2 2 1 Predicted ATPase of the ABC class AAA_29 PF13555.6 gi|336255175|ref|YP_004598282.1| - 0.00066 19.4 0.0 0.0015 18.3 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|336255175|ref|YP_004598282.1| - 0.0012 18.8 0.0 0.0021 18.0 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_23 PF13476.6 gi|336255175|ref|YP_004598282.1| - 0.0017 18.9 0.0 0.0033 18.0 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|336255175|ref|YP_004598282.1| - 0.0017 18.1 0.0 0.0044 16.8 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|336255175|ref|YP_004598282.1| - 0.0048 17.2 0.3 0.051 13.8 0.3 2.1 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|336255175|ref|YP_004598282.1| - 0.006 16.3 0.0 0.016 15.0 0.0 1.6 2 0 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|336255175|ref|YP_004598282.1| - 0.0066 16.9 0.1 1.2 9.6 0.0 2.4 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) TsaE PF02367.17 gi|336255175|ref|YP_004598282.1| - 0.0094 16.0 0.1 0.022 14.7 0.1 1.6 1 1 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE TniB PF05621.11 gi|336255175|ref|YP_004598282.1| - 0.018 14.4 0.1 2.2 7.7 0.1 2.2 2 0 0 2 2 2 0 Bacterial TniB protein AAA_10 PF12846.7 gi|336255175|ref|YP_004598282.1| - 0.027 13.4 0.3 1.1 8.1 0.0 2.2 2 0 0 2 2 2 0 AAA-like domain MMR_HSR1 PF01926.23 gi|336255175|ref|YP_004598282.1| - 0.029 14.5 0.0 0.094 12.8 0.0 1.9 2 1 0 2 2 2 0 50S ribosome-binding GTPase AAA_25 PF13481.6 gi|336255175|ref|YP_004598282.1| - 0.03 13.9 0.3 0.83 9.2 0.0 2.3 2 0 0 2 2 2 0 AAA domain Dynamin_N PF00350.23 gi|336255175|ref|YP_004598282.1| - 0.039 14.0 0.0 0.068 13.2 0.0 1.4 1 0 0 1 1 1 0 Dynamin family Zeta_toxin PF06414.12 gi|336255175|ref|YP_004598282.1| - 0.044 13.1 0.0 0.087 12.1 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_24 PF13479.6 gi|336255175|ref|YP_004598282.1| - 0.069 12.9 0.0 0.29 10.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain BPD_transp_2 PF02653.16 gi|336255176|ref|YP_004598283.1| - 5.4e-49 166.7 39.1 7.7e-49 166.3 39.1 1.1 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component DUF1467 PF07330.12 gi|336255176|ref|YP_004598283.1| - 0.067 13.1 2.8 0.077 12.9 0.4 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1467) SGL PF08450.12 gi|336255177|ref|YP_004598284.1| - 3.6e-72 242.9 0.0 4.4e-72 242.6 0.0 1.1 1 0 0 1 1 1 1 SMP-30/Gluconolactonase/LRE-like region Arylesterase PF01731.20 gi|336255177|ref|YP_004598284.1| - 0.21 11.8 0.0 0.41 10.9 0.0 1.4 1 0 0 1 1 1 0 Arylesterase Epimerase PF01370.21 gi|336255178|ref|YP_004598285.1| - 1.7e-34 119.3 0.2 1.4e-18 67.2 0.0 2.1 1 1 1 2 2 2 2 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|336255178|ref|YP_004598285.1| - 2.4e-11 43.1 0.0 1.7e-09 37.1 0.0 2.1 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family GDP_Man_Dehyd PF16363.5 gi|336255178|ref|YP_004598285.1| - 3.4e-10 39.8 0.1 4.5e-05 23.0 0.0 2.2 1 1 1 2 2 2 2 GDP-mannose 4,6 dehydratase NAD_binding_10 PF13460.6 gi|336255178|ref|YP_004598285.1| - 7.5e-10 39.0 0.0 1.3e-09 38.2 0.0 1.5 1 0 0 1 1 1 1 NAD(P)H-binding NAD_binding_4 PF07993.12 gi|336255178|ref|YP_004598285.1| - 1.7e-07 30.7 0.0 0.0013 17.9 0.0 2.2 2 0 0 2 2 2 2 Male sterility protein RmlD_sub_bind PF04321.17 gi|336255178|ref|YP_004598285.1| - 9e-07 28.3 0.1 0.027 13.6 0.0 2.1 2 0 0 2 2 2 2 RmlD substrate binding domain TrkA_N PF02254.18 gi|336255178|ref|YP_004598285.1| - 0.016 15.5 0.0 0.033 14.5 0.0 1.5 1 0 0 1 1 1 0 TrkA-N domain NmrA PF05368.13 gi|336255178|ref|YP_004598285.1| - 0.057 13.0 0.0 0.12 11.9 0.0 1.5 2 0 0 2 2 2 0 NmrA-like family adh_short PF00106.25 gi|336255178|ref|YP_004598285.1| - 0.07 12.6 0.0 0.15 11.5 0.0 1.6 1 0 0 1 1 1 0 short chain dehydrogenase ATPase PF06745.13 gi|336255179|ref|YP_004598286.1| - 2.4e-16 59.8 0.0 4.7e-16 58.8 0.0 1.4 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|336255179|ref|YP_004598286.1| - 0.0044 16.6 0.5 0.018 14.7 0.5 1.9 1 1 0 1 1 1 1 AAA domain zf-FCS PF06467.14 gi|336255179|ref|YP_004598286.1| - 0.049 13.6 1.8 0.15 12.1 1.8 1.8 1 1 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif Elong_Iki1 PF10483.9 gi|336255179|ref|YP_004598286.1| - 0.22 11.0 0.0 0.37 10.3 0.0 1.3 1 1 0 1 1 1 0 Elongator subunit Iki1 DUF123 PF01986.16 gi|336255181|ref|YP_004598288.1| - 0.00012 22.5 0.9 0.00024 21.5 0.1 1.9 2 0 0 2 2 2 1 Domain of unknown function DUF123 GATase_2 PF00310.21 gi|336255182|ref|YP_004598289.1| - 8.9e-157 522.1 0.0 1.2e-156 521.7 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II Glu_synthase PF01645.17 gi|336255182|ref|YP_004598289.1| - 1.9e-151 504.4 0.1 6.7e-150 499.3 0.0 2.1 2 0 0 2 2 2 1 Conserved region in glutamate synthase Glu_syn_central PF04898.14 gi|336255182|ref|YP_004598289.1| - 2.4e-116 388.1 0.0 4.5e-116 387.2 0.0 1.5 1 0 0 1 1 1 1 Glutamate synthase central domain GXGXG PF01493.19 gi|336255182|ref|YP_004598289.1| - 1.6e-80 269.2 6.2 2.7e-80 268.5 6.2 1.4 1 0 0 1 1 1 1 GXGXG motif NMO PF03060.15 gi|336255182|ref|YP_004598289.1| - 9.5e-05 21.9 0.9 0.00018 21.0 0.9 1.3 1 0 0 1 1 1 1 Nitronate monooxygenase FMN_dh PF01070.18 gi|336255182|ref|YP_004598289.1| - 0.0046 16.0 2.9 0.0046 16.0 2.9 2.5 3 0 0 3 3 3 1 FMN-dependent dehydrogenase tRNA-synt_2b PF00587.25 gi|336255183|ref|YP_004598290.1| - 2.6e-23 82.9 0.0 5e-23 82.0 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) ProRS-C_1 PF09180.11 gi|336255183|ref|YP_004598290.1| - 2.3e-21 75.7 0.7 5.4e-21 74.6 0.7 1.7 1 0 0 1 1 1 1 Prolyl-tRNA synthetase, C-terminal HGTP_anticodon PF03129.20 gi|336255183|ref|YP_004598290.1| - 1.4e-20 73.2 0.2 2.9e-20 72.2 0.2 1.5 1 0 0 1 1 1 1 Anticodon binding domain TIR_2 PF13676.6 gi|336255183|ref|YP_004598290.1| - 0.15 12.7 0.1 4.6 7.9 0.0 2.8 3 0 0 3 3 3 0 TIR domain NUDIX PF00293.28 gi|336255184|ref|YP_004598291.1| - 3.5e-16 59.4 2.7 4.9e-16 59.0 2.7 1.2 1 0 0 1 1 1 1 NUDIX domain UvrD-helicase PF00580.21 gi|336255185|ref|YP_004598292.1| - 2.8e-49 168.4 0.0 8.6e-49 166.7 0.0 1.8 1 1 0 1 1 1 1 UvrD/REP helicase N-terminal domain UvrD_C PF13361.6 gi|336255185|ref|YP_004598292.1| - 3.5e-28 99.0 0.0 1.3e-13 51.1 0.0 3.0 3 0 0 3 3 3 2 UvrD-like helicase C-terminal domain AAA_19 PF13245.6 gi|336255185|ref|YP_004598292.1| - 1.9e-26 93.2 0.0 1.2e-25 90.5 0.0 2.5 2 1 0 2 2 2 1 AAA domain PDDEXK_1 PF12705.7 gi|336255185|ref|YP_004598292.1| - 1.9e-18 67.3 1.8 5.1e-18 65.9 0.0 2.7 3 0 0 3 3 3 1 PD-(D/E)XK nuclease superfamily UvrD_C_2 PF13538.6 gi|336255185|ref|YP_004598292.1| - 9.7e-09 34.9 0.2 0.00032 20.5 0.0 3.3 3 0 0 3 3 3 2 UvrD-like helicase C-terminal domain AAA_12 PF13087.6 gi|336255185|ref|YP_004598292.1| - 3.3e-07 30.1 0.0 0.00025 20.7 0.0 2.8 3 0 0 3 3 3 2 AAA domain AAA_30 PF13604.6 gi|336255185|ref|YP_004598292.1| - 0.00029 20.6 0.0 0.00083 19.1 0.0 1.7 1 0 0 1 1 1 1 AAA domain Viral_helicase1 PF01443.18 gi|336255185|ref|YP_004598292.1| - 0.0021 17.9 0.1 0.066 12.9 0.0 2.8 3 0 0 3 3 3 1 Viral (Superfamily 1) RNA helicase PDDEXK_1 PF12705.7 gi|336255186|ref|YP_004598293.1| - 7.1e-06 26.1 0.1 0.0026 17.7 0.0 2.3 2 0 0 2 2 2 2 PD-(D/E)XK nuclease superfamily CobT PF06213.12 gi|336255186|ref|YP_004598293.1| - 0.018 14.4 0.9 0.031 13.7 0.9 1.3 1 0 0 1 1 1 0 Cobalamin biosynthesis protein CobT HlyD_D4 PF16572.5 gi|336255187|ref|YP_004598294.1| - 0.072 13.0 3.5 5.7 6.9 0.1 4.0 3 0 0 3 3 3 0 Long alpha hairpin domain of cation efflux system protein, CusB CBS PF00571.28 gi|336255188|ref|YP_004598295.1| - 2e-27 95.4 3.9 1.1e-15 57.8 0.2 2.1 2 0 0 2 2 2 2 CBS domain HTH_33 PF13592.6 gi|336255190|ref|YP_004598297.1| - 0.0043 16.7 0.1 0.057 13.1 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn helix DSBA PF01323.20 gi|336255191|ref|YP_004598298.1| - 2.1e-32 112.5 0.0 2.3e-32 112.3 0.0 1.0 1 0 0 1 1 1 1 DSBA-like thioredoxin domain Thioredoxin_4 PF13462.6 gi|336255191|ref|YP_004598298.1| - 8.1e-13 48.9 0.1 1e-10 42.0 0.0 2.2 2 1 0 2 2 2 2 Thioredoxin Thioredoxin_2 PF13098.6 gi|336255191|ref|YP_004598298.1| - 0.0024 18.3 0.4 0.062 13.8 0.1 2.3 2 1 0 2 2 2 1 Thioredoxin-like domain zinc_ribbon_4 PF13717.6 gi|336255193|ref|YP_004598300.1| - 0.00035 20.4 1.4 0.13 12.2 0.0 2.1 2 0 0 2 2 2 2 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|336255193|ref|YP_004598300.1| - 0.0026 17.8 0.3 0.24 11.5 0.0 2.1 2 0 0 2 2 2 1 Zinc ribbon domain UPF0547 PF10571.9 gi|336255193|ref|YP_004598300.1| - 0.0032 17.5 5.1 0.022 14.8 0.8 2.1 2 0 0 2 2 2 1 Uncharacterised protein family UPF0547 TFIIS_C PF01096.18 gi|336255193|ref|YP_004598300.1| - 0.0064 16.3 1.9 0.049 13.5 0.1 2.0 2 0 0 2 2 2 1 Transcription factor S-II (TFIIS) DUF4379 PF14311.6 gi|336255193|ref|YP_004598300.1| - 0.0069 16.7 0.5 0.031 14.7 0.0 1.9 2 0 0 2 2 2 1 Probable Zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|336255193|ref|YP_004598300.1| - 0.0093 15.3 2.8 0.17 11.3 0.5 2.2 2 0 0 2 2 2 1 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|336255193|ref|YP_004598300.1| - 0.01 15.8 6.2 0.021 14.8 1.9 2.1 2 0 0 2 2 2 1 PhnA Zinc-Ribbon DUF1610 PF07754.11 gi|336255193|ref|YP_004598300.1| - 0.012 15.6 1.7 0.012 15.6 1.7 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF1610) Zn_Tnp_IS1595 PF12760.7 gi|336255193|ref|YP_004598300.1| - 0.019 14.9 0.3 0.37 10.8 0.0 2.0 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zf-H2C2_2 PF13465.6 gi|336255193|ref|YP_004598300.1| - 0.024 15.1 1.3 0.85 10.2 0.1 2.1 2 0 0 2 2 2 0 Zinc-finger double domain zinc_ribbon_5 PF13719.6 gi|336255193|ref|YP_004598300.1| - 0.026 14.3 2.5 0.43 10.4 0.5 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|336255193|ref|YP_004598300.1| - 0.033 13.9 3.8 0.087 12.6 0.1 2.4 2 1 0 2 2 2 0 zinc-ribbon domain zf_Rg PF17915.1 gi|336255193|ref|YP_004598300.1| - 0.033 13.6 0.5 0.49 9.8 0.1 2.1 2 0 0 2 2 2 0 Reverse gyrase zinc finger zf-Mss51 PF13824.6 gi|336255193|ref|YP_004598300.1| - 0.04 14.0 2.4 0.081 13.0 2.4 1.6 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 IBR PF01485.21 gi|336255193|ref|YP_004598300.1| - 0.042 14.1 0.1 0.047 13.9 0.1 1.1 1 0 0 1 1 1 0 IBR domain, a half RING-finger domain Sgf11 PF08209.11 gi|336255193|ref|YP_004598300.1| - 0.044 13.4 0.9 0.19 11.3 0.1 2.0 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) DUF1272 PF06906.11 gi|336255193|ref|YP_004598300.1| - 0.045 13.8 0.5 1.9 8.6 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1272) DpnI PF06044.12 gi|336255193|ref|YP_004598300.1| - 0.057 13.1 0.1 0.066 12.8 0.1 1.0 1 0 0 1 1 1 0 Dam-replacing family zf-RING_7 PF02591.15 gi|336255193|ref|YP_004598300.1| - 0.073 13.3 2.3 3.1 8.1 0.1 2.1 2 0 0 2 2 2 0 C4-type zinc ribbon domain CpXC PF14353.6 gi|336255193|ref|YP_004598300.1| - 0.093 12.8 2.1 0.3 11.1 0.1 2.0 1 1 1 2 2 2 0 CpXC protein DUF35_N PF12172.8 gi|336255193|ref|YP_004598300.1| - 0.1 12.5 2.7 2.9 7.8 0.2 2.1 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Rubredoxin PF00301.20 gi|336255193|ref|YP_004598300.1| - 0.13 12.3 2.9 1.9 8.6 0.3 2.1 2 0 0 2 2 2 0 Rubredoxin HypA PF01155.19 gi|336255193|ref|YP_004598300.1| - 0.18 11.9 0.5 0.3 11.1 0.5 1.5 1 1 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Elf1 PF05129.13 gi|336255193|ref|YP_004598300.1| - 0.18 11.9 1.1 0.27 11.3 0.1 1.8 1 1 1 2 2 2 0 Transcription elongation factor Elf1 like OrfB_Zn_ribbon PF07282.11 gi|336255193|ref|YP_004598300.1| - 0.23 11.4 1.2 0.43 10.5 1.2 1.5 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zf-NADH-PPase PF09297.11 gi|336255193|ref|YP_004598300.1| - 0.37 10.5 4.7 1.7 8.4 0.5 2.3 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Rubredoxin_2 PF18073.1 gi|336255193|ref|YP_004598300.1| - 1.2 8.9 6.3 2.7 7.8 0.6 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain Apolipoprotein PF01442.18 gi|336255195|ref|YP_004598302.1| - 4.4e-06 26.7 3.2 1.1e-05 25.4 3.1 1.7 1 1 0 1 1 1 1 Apolipoprotein A1/A4/E domain DUF883 PF05957.13 gi|336255195|ref|YP_004598302.1| - 0.025 15.1 3.3 0.89 10.2 0.8 2.4 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF883) Chlorosome_CsmC PF11098.8 gi|336255195|ref|YP_004598302.1| - 0.031 14.3 3.5 0.19 11.7 1.0 2.1 2 0 0 2 2 2 0 Chlorosome envelope protein C YtxH PF12732.7 gi|336255195|ref|YP_004598302.1| - 0.11 13.0 16.7 0.64 10.6 4.2 3.1 1 1 1 2 2 2 0 YtxH-like protein SseC PF04888.12 gi|336255195|ref|YP_004598302.1| - 0.74 9.3 6.3 0.9 9.1 6.3 1.4 1 1 0 1 1 1 0 Secretion system effector C (SseC) like family ATP-synt_B PF00430.18 gi|336255195|ref|YP_004598302.1| - 3.7 7.6 6.5 0.46 10.6 1.9 1.7 2 0 0 2 2 2 0 ATP synthase B/B' CF(0) HTH_10 PF04967.12 gi|336255196|ref|YP_004598303.1| - 2.5e-16 59.2 0.0 3.7e-16 58.6 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|336255196|ref|YP_004598303.1| - 1e-08 35.2 0.0 1.6e-08 34.6 0.0 1.2 1 0 0 1 1 1 1 GAF and HTH_10 associated domain Sigma70_r4 PF04545.16 gi|336255196|ref|YP_004598303.1| - 1.1e-08 34.4 0.0 2.5e-08 33.3 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 Sigma70_r4_2 PF08281.12 gi|336255196|ref|YP_004598303.1| - 3.1e-05 23.6 0.0 0.00011 21.9 0.0 1.8 2 0 0 2 2 2 1 Sigma-70, region 4 MarR_2 PF12802.7 gi|336255196|ref|YP_004598303.1| - 0.00023 21.0 0.9 0.00069 19.5 0.9 1.9 1 1 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|336255196|ref|YP_004598303.1| - 0.00057 19.4 0.0 0.0011 18.5 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_23 PF13384.6 gi|336255196|ref|YP_004598303.1| - 0.025 14.4 0.1 0.044 13.6 0.1 1.3 1 0 0 1 1 1 0 Homeodomain-like domain HTH_11 PF08279.12 gi|336255196|ref|YP_004598303.1| - 0.026 14.5 0.5 0.059 13.3 0.0 1.8 2 0 0 2 2 2 0 HTH domain HTH_AsnC-type PF13404.6 gi|336255196|ref|YP_004598303.1| - 0.026 14.3 0.1 0.055 13.3 0.1 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain AgrD PF05931.11 gi|336255196|ref|YP_004598303.1| - 0.037 14.1 0.1 1.3 9.1 0.0 2.4 2 0 0 2 2 2 0 Staphylococcal AgrD protein GerE PF00196.19 gi|336255196|ref|YP_004598303.1| - 0.042 13.4 0.0 0.07 12.7 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family Peptidase_M48 PF01435.18 gi|336255198|ref|YP_004598305.1| - 1e-22 80.9 0.0 4.8e-22 78.7 0.0 1.9 1 1 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|336255198|ref|YP_004598305.1| - 8.7e-05 21.9 0.0 0.00015 21.1 0.0 1.5 1 0 0 1 1 1 1 BlaR1 peptidase M56 SprT-like PF10263.9 gi|336255198|ref|YP_004598305.1| - 0.0014 18.4 0.0 0.0021 17.9 0.0 1.2 1 0 0 1 1 1 1 SprT-like family DUF2268 PF10026.9 gi|336255198|ref|YP_004598305.1| - 0.077 12.6 0.0 0.12 11.9 0.0 1.2 1 0 0 1 1 1 0 Predicted Zn-dependent protease (DUF2268) Rhomboid PF01694.22 gi|336255199|ref|YP_004598306.1| - 1.2e-24 87.0 16.5 1.2e-24 87.0 16.5 1.8 2 0 0 2 2 2 1 Rhomboid family DUF1751 PF08551.10 gi|336255199|ref|YP_004598306.1| - 0.0018 18.8 10.4 0.0021 18.6 0.9 2.5 2 1 1 3 3 3 2 Eukaryotic integral membrane protein (DUF1751) Ribosomal_S10 PF00338.22 gi|336255200|ref|YP_004598307.1| - 1.3e-25 89.4 0.0 1.5e-25 89.3 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e GTP_EFTU PF00009.27 gi|336255201|ref|YP_004598308.1| - 4.3e-57 192.8 0.0 5.1e-57 192.6 0.0 1.1 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.17 gi|336255201|ref|YP_004598308.1| - 3.1e-37 127.3 0.0 7.8e-37 126.0 0.0 1.7 2 0 0 2 2 2 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.25 gi|336255201|ref|YP_004598308.1| - 5e-15 55.7 3.8 1.5e-14 54.1 1.2 2.5 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|336255201|ref|YP_004598308.1| - 3.7e-07 30.2 0.1 2.8e-06 27.4 0.1 2.3 1 1 0 1 1 1 1 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|336255201|ref|YP_004598308.1| - 0.0009 19.2 1.2 0.068 13.1 0.2 2.3 1 1 1 2 2 2 1 RsgA GTPase Gtr1_RagA PF04670.12 gi|336255201|ref|YP_004598308.1| - 0.0026 17.1 0.1 0.068 12.5 0.0 2.2 2 0 0 2 2 2 1 Gtr1/RagA G protein conserved region Dynamin_N PF00350.23 gi|336255201|ref|YP_004598308.1| - 0.0073 16.4 0.0 1.4 8.9 0.0 2.4 1 1 0 1 1 1 1 Dynamin family SRPRB PF09439.10 gi|336255201|ref|YP_004598308.1| - 0.011 15.2 0.0 0.41 10.1 0.0 2.2 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit GTP_EFTU_D4 PF14578.6 gi|336255201|ref|YP_004598308.1| - 0.016 15.1 0.6 0.057 13.3 0.6 1.9 1 0 0 1 1 1 0 Elongation factor Tu domain 4 FeoB_N PF02421.18 gi|336255201|ref|YP_004598308.1| - 0.018 14.6 0.1 0.33 10.5 0.1 2.5 2 1 0 2 2 2 0 Ferrous iron transport protein B Septin PF00735.18 gi|336255201|ref|YP_004598308.1| - 0.12 11.7 0.0 0.28 10.4 0.0 1.5 1 1 0 1 1 1 0 Septin Homoserine_dh PF00742.19 gi|336255202|ref|YP_004598309.1| - 1.2e-48 165.3 0.1 1.9e-48 164.6 0.1 1.3 1 0 0 1 1 1 1 Homoserine dehydrogenase ELFV_dehydrog PF00208.21 gi|336255202|ref|YP_004598309.1| - 5.7e-08 32.8 0.1 1.1e-07 31.9 0.1 1.5 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NAD_binding_3 PF03447.16 gi|336255202|ref|YP_004598309.1| - 5.2e-07 30.3 0.1 1.2e-06 29.2 0.1 1.6 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain 3HCDH_N PF02737.18 gi|336255202|ref|YP_004598309.1| - 0.0032 17.4 0.0 0.005 16.8 0.0 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|336255202|ref|YP_004598309.1| - 0.004 16.5 0.0 0.0063 15.9 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain PglD_N PF17836.1 gi|336255202|ref|YP_004598309.1| - 0.0081 16.8 0.0 0.017 15.8 0.0 1.7 1 0 0 1 1 1 1 PglD N-terminal domain XdhC_C PF13478.6 gi|336255202|ref|YP_004598309.1| - 0.0083 16.6 0.1 0.017 15.7 0.1 1.6 1 0 0 1 1 1 1 XdhC Rossmann domain F420_oxidored PF03807.17 gi|336255202|ref|YP_004598309.1| - 0.009 16.6 0.1 0.058 14.0 0.0 2.3 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.16 gi|336255202|ref|YP_004598309.1| - 0.01 15.5 0.0 0.015 14.9 0.0 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA GFO_IDH_MocA PF01408.22 gi|336255202|ref|YP_004598309.1| - 0.021 15.6 0.0 0.04 14.8 0.0 1.4 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold TrkA_N PF02254.18 gi|336255202|ref|YP_004598309.1| - 0.072 13.3 0.1 0.67 10.2 0.0 2.4 2 0 0 2 2 2 0 TrkA-N domain ACT PF01842.25 gi|336255203|ref|YP_004598310.1| - 2.9e-06 27.0 0.5 0.00095 18.9 0.0 3.1 2 1 1 3 3 3 2 ACT domain Arg_repressor PF01316.21 gi|336255203|ref|YP_004598310.1| - 0.12 12.1 0.0 0.22 11.3 0.0 1.3 1 0 0 1 1 1 0 Arginine repressor, DNA binding domain Sigma70_r1_1 PF03979.14 gi|336255203|ref|YP_004598310.1| - 0.22 11.6 0.0 0.22 11.6 0.0 2.1 2 0 0 2 2 2 0 Sigma-70 factor, region 1.1 NifU PF01106.17 gi|336255204|ref|YP_004598311.1| - 3.9e-09 36.5 0.3 6.8e-09 35.8 0.3 1.4 1 1 0 1 1 1 1 NifU-like domain DAGK_prokar PF01219.19 gi|336255206|ref|YP_004598313.1| - 0.085 12.7 1.9 0.14 12.0 1.9 1.4 1 0 0 1 1 1 0 Prokaryotic diacylglycerol kinase EI24 PF07264.11 gi|336255206|ref|YP_004598313.1| - 0.22 11.8 12.2 0.98 9.6 12.5 1.9 1 1 0 1 1 1 0 Etoposide-induced protein 2.4 (EI24) DUF948 PF06103.11 gi|336255206|ref|YP_004598313.1| - 1.1 9.6 4.2 6.1 7.2 3.7 2.4 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF948) DMRL_synthase PF00885.19 gi|336255207|ref|YP_004598314.1| - 6.6e-30 103.8 1.4 8.2e-30 103.5 1.4 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase Rubredoxin_C PF18267.1 gi|336255207|ref|YP_004598314.1| - 0.19 11.6 0.1 0.31 11.0 0.1 1.3 1 0 0 1 1 1 0 Rubredoxin NAD+ reductase C-terminal domain Cadherin_4 PF17803.1 gi|336255207|ref|YP_004598314.1| - 0.32 11.7 7.0 2 9.1 7.0 2.2 1 1 0 1 1 1 0 Bacterial cadherin-like domain Aminotran_1_2 PF00155.21 gi|336255208|ref|YP_004598315.1| - 6.7e-65 219.6 0.0 7.6e-65 219.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|336255208|ref|YP_004598315.1| - 0.00013 20.6 0.0 0.00021 19.9 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.19 gi|336255208|ref|YP_004598315.1| - 0.00095 18.2 0.1 0.0035 16.4 0.0 1.8 2 0 0 2 2 2 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|336255208|ref|YP_004598315.1| - 0.0075 15.6 0.2 0.013 14.8 0.2 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_MocR PF12897.7 gi|336255208|ref|YP_004598315.1| - 0.017 13.9 0.1 0.023 13.5 0.1 1.2 1 0 0 1 1 1 0 Alanine-glyoxylate amino-transferase Aminotran_3 PF00202.21 gi|336255208|ref|YP_004598315.1| - 0.11 11.1 0.0 0.2 10.3 0.0 1.4 1 1 0 1 1 1 0 Aminotransferase class-III Beta_elim_lyase PF01212.21 gi|336255208|ref|YP_004598315.1| - 0.13 11.5 0.1 0.32 10.2 0.0 1.6 2 0 0 2 2 2 0 Beta-eliminating lyase Cucumopine_C PF18631.1 gi|336255208|ref|YP_004598315.1| - 0.13 12.2 0.1 0.41 10.6 0.1 1.8 1 1 0 1 1 1 0 Cucumopine synthase C-terminal helical bundle domain DZR PF12773.7 gi|336255209|ref|YP_004598316.1| - 0.00099 19.1 21.4 0.048 13.7 4.2 4.3 1 1 2 3 3 3 1 Double zinc ribbon zf-C2H2_6 PF13912.6 gi|336255209|ref|YP_004598316.1| - 0.013 15.5 0.9 0.013 15.5 0.9 4.2 4 0 0 4 4 4 0 C2H2-type zinc finger FYVE PF01363.21 gi|336255209|ref|YP_004598316.1| - 0.019 15.1 1.2 0.019 15.1 1.2 4.4 3 2 0 3 3 3 0 FYVE zinc finger C1_1 PF00130.22 gi|336255209|ref|YP_004598316.1| - 0.028 14.3 18.5 0.049 13.5 0.3 5.0 4 1 1 5 5 5 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-MYND PF01753.18 gi|336255209|ref|YP_004598316.1| - 0.057 13.5 10.7 0.61 10.2 0.1 4.5 2 1 1 3 3 3 0 MYND finger Zn-ribbon_8 PF09723.10 gi|336255209|ref|YP_004598316.1| - 0.063 13.4 24.2 0.22 11.7 0.5 5.6 4 1 0 5 5 5 0 Zinc ribbon domain Opiods_neuropep PF01160.18 gi|336255209|ref|YP_004598316.1| - 0.12 12.4 6.2 0.3 11.2 0.3 3.0 3 0 0 3 3 3 0 Vertebrate endogenous opioids neuropeptide OrfB_Zn_ribbon PF07282.11 gi|336255209|ref|YP_004598316.1| - 0.23 11.4 24.0 2.1 8.4 0.8 5.2 5 0 0 5 5 5 0 Putative transposase DNA-binding domain zinc-ribbons_6 PF07191.12 gi|336255209|ref|YP_004598316.1| - 1.1 9.3 20.5 15 5.7 5.1 4.4 3 1 1 4 4 4 0 zinc-ribbons Kp4 PF09044.10 gi|336255209|ref|YP_004598316.1| - 1.6 8.8 6.4 12 6.0 0.2 3.5 3 1 1 4 4 4 0 Kp4 FYVE_2 PF02318.16 gi|336255209|ref|YP_004598316.1| - 2 8.7 8.2 0.17 12.1 0.5 2.7 2 1 2 4 4 3 0 FYVE-type zinc finger HypA PF01155.19 gi|336255209|ref|YP_004598316.1| - 2 8.4 18.7 1.4 8.9 0.6 4.2 2 2 1 3 3 3 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA FpoO PF10621.9 gi|336255209|ref|YP_004598316.1| - 2.3 8.6 7.5 9.1 6.6 0.1 2.9 1 1 1 2 2 2 0 F420H2 dehydrogenase subunit FpoO zf-ribbon_3 PF13248.6 gi|336255209|ref|YP_004598316.1| - 2.5 7.6 27.9 3.4 7.2 0.3 6.3 6 1 0 6 6 6 0 zinc-ribbon domain zf-Di19 PF05605.12 gi|336255209|ref|YP_004598316.1| - 3.3 8.1 11.0 0.08 13.2 1.8 2.9 3 0 0 3 3 3 0 Drought induced 19 protein (Di19), zinc-binding zf-C2H2_jaz PF12171.8 gi|336255209|ref|YP_004598316.1| - 3.8 7.9 0.0 3.8 7.9 0.0 3.2 3 0 0 3 3 2 0 Zinc-finger double-stranded RNA-binding Nudix_N_2 PF14803.6 gi|336255209|ref|YP_004598316.1| - 6.9 6.7 25.1 0.51 10.3 1.5 6.5 6 1 0 6 6 6 0 Nudix N-terminal IMPDH PF00478.25 gi|336255210|ref|YP_004598317.1| - 2.2e-122 408.4 4.8 2.6e-122 408.1 4.8 1.0 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain NMO PF03060.15 gi|336255210|ref|YP_004598317.1| - 8.2e-09 35.3 11.4 0.00015 21.3 8.5 2.5 1 1 0 2 2 2 2 Nitronate monooxygenase FMN_dh PF01070.18 gi|336255210|ref|YP_004598317.1| - 4.6e-07 29.2 10.4 1.5e-06 27.5 10.4 1.8 1 1 0 1 1 1 1 FMN-dependent dehydrogenase His_biosynth PF00977.21 gi|336255210|ref|YP_004598317.1| - 2.6e-06 27.1 1.2 0.00029 20.4 0.1 2.3 2 0 0 2 2 2 2 Histidine biosynthesis protein Glu_synthase PF01645.17 gi|336255210|ref|YP_004598317.1| - 0.00065 18.9 2.5 0.00065 18.9 2.5 2.1 2 0 0 2 2 2 1 Conserved region in glutamate synthase DHO_dh PF01180.21 gi|336255210|ref|YP_004598317.1| - 0.0095 15.2 0.7 0.016 14.4 0.7 1.3 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase TMP-TENI PF02581.17 gi|336255210|ref|YP_004598317.1| - 0.021 14.2 5.4 0.037 13.4 5.1 1.5 1 1 0 1 1 1 0 Thiamine monophosphate synthase Aldolase PF01081.19 gi|336255210|ref|YP_004598317.1| - 0.077 12.4 4.4 0.15 11.5 0.9 2.4 1 1 2 3 3 3 0 KDPG and KHG aldolase ATP-grasp PF02222.22 gi|336255211|ref|YP_004598318.1| - 3.9e-52 176.3 0.0 6.2e-52 175.6 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain PurK_C PF17769.1 gi|336255211|ref|YP_004598318.1| - 7.6e-20 70.4 0.1 1.8e-19 69.2 0.1 1.6 1 0 0 1 1 1 1 Phosphoribosylaminoimidazole carboxylase C-terminal domain Dala_Dala_lig_C PF07478.13 gi|336255211|ref|YP_004598318.1| - 2.2e-08 33.9 0.1 2.9e-07 30.2 0.1 2.4 2 1 0 2 2 2 1 D-ala D-ala ligase C-terminus ATP-grasp_3 PF02655.14 gi|336255211|ref|YP_004598318.1| - 6.1e-08 32.9 0.0 9.2e-08 32.3 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain 2-Hacid_dh_C PF02826.19 gi|336255211|ref|YP_004598318.1| - 3.4e-06 26.5 0.0 6.4e-06 25.6 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CPSase_L_D2 PF02786.17 gi|336255211|ref|YP_004598318.1| - 0.00046 19.7 0.1 0.00074 19.1 0.1 1.4 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain XdhC_C PF13478.6 gi|336255211|ref|YP_004598318.1| - 0.0012 19.3 0.2 0.004 17.6 0.0 1.9 2 0 0 2 2 2 1 XdhC Rossmann domain 3HCDH_N PF02737.18 gi|336255211|ref|YP_004598318.1| - 0.0018 18.2 0.2 0.0042 17.0 0.0 1.8 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ATP-grasp_5 PF13549.6 gi|336255211|ref|YP_004598318.1| - 0.014 14.8 0.0 0.039 13.4 0.0 1.8 2 0 0 2 2 2 0 ATP-grasp domain Pyr_redox PF00070.27 gi|336255211|ref|YP_004598318.1| - 0.023 15.2 0.5 0.14 12.8 0.0 2.7 3 0 0 3 3 2 0 Pyridine nucleotide-disulphide oxidoreductase PALP PF00291.25 gi|336255211|ref|YP_004598318.1| - 0.036 13.5 0.1 0.22 10.9 0.0 2.2 2 1 0 2 2 2 0 Pyridoxal-phosphate dependent enzyme GARS_A PF01071.19 gi|336255211|ref|YP_004598318.1| - 0.04 13.7 0.0 0.066 13.0 0.0 1.4 1 0 0 1 1 1 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain NAD_binding_2 PF03446.15 gi|336255211|ref|YP_004598318.1| - 0.16 12.1 0.0 0.54 10.4 0.0 1.9 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase RRM_1 PF00076.22 gi|336255211|ref|YP_004598318.1| - 0.18 11.7 0.1 5.3 6.9 0.0 2.6 1 1 1 2 2 2 0 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) AIRC PF00731.20 gi|336255212|ref|YP_004598319.1| - 1.5e-48 164.2 0.0 1.8e-48 163.9 0.0 1.1 1 0 0 1 1 1 1 AIR carboxylase Oxidored_q4 PF00507.19 gi|336255213|ref|YP_004598320.1| - 3.4e-31 107.3 0.4 4.1e-31 107.1 0.4 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 TrbC PF04956.13 gi|336255213|ref|YP_004598320.1| - 0.041 14.1 3.2 0.35 11.1 0.2 2.3 2 0 0 2 2 2 0 TrbC/VIRB2 family Oxidored_q6 PF01058.22 gi|336255214|ref|YP_004598321.1| - 3.9e-21 75.3 0.1 5.6e-21 74.7 0.1 1.2 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Complex1_49kDa PF00346.19 gi|336255215|ref|YP_004598322.1| - 1.9e-87 292.8 0.2 4.6e-86 288.3 0.2 2.1 1 1 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.19 gi|336255215|ref|YP_004598322.1| - 1.6e-33 115.9 0.2 3e-33 115.1 0.2 1.5 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NiFeSe_Hases PF00374.19 gi|336255215|ref|YP_004598322.1| - 0.045 12.6 0.0 2.8 6.7 0.0 2.4 3 0 0 3 3 3 0 Nickel-dependent hydrogenase NADHdh PF00146.21 gi|336255216|ref|YP_004598323.1| - 2.7e-94 315.8 12.7 3.3e-94 315.6 12.7 1.0 1 0 0 1 1 1 1 NADH dehydrogenase Fer4 PF00037.27 gi|336255217|ref|YP_004598324.1| - 1.5e-12 46.7 8.9 1.9e-06 27.5 2.3 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|336255217|ref|YP_004598324.1| - 8e-12 45.6 10.6 1.2e-11 44.9 10.6 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|336255217|ref|YP_004598324.1| - 1.6e-10 41.7 3.2 1.8e-05 25.6 0.1 2.3 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_9 PF13187.6 gi|336255217|ref|YP_004598324.1| - 3.3e-09 36.8 22.8 4.7e-07 29.9 12.2 1.9 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|336255217|ref|YP_004598324.1| - 4.3e-09 36.4 8.0 6.8e-09 35.7 8.0 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|336255217|ref|YP_004598324.1| - 5.6e-06 26.4 10.7 4.7e-05 23.4 11.9 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|336255217|ref|YP_004598324.1| - 6.6e-06 26.0 12.8 0.0053 16.8 1.5 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|336255217|ref|YP_004598324.1| - 1.5e-05 25.4 12.7 0.0057 17.2 1.8 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|336255217|ref|YP_004598324.1| - 5.1e-05 23.6 11.1 0.00084 19.7 12.2 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|336255217|ref|YP_004598324.1| - 0.00011 22.1 12.8 0.0044 17.0 1.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.7 gi|336255217|ref|YP_004598324.1| - 0.00036 20.8 14.3 0.0034 17.8 3.8 2.3 1 1 1 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|336255217|ref|YP_004598324.1| - 0.001 19.8 15.2 0.018 16.0 3.6 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|336255217|ref|YP_004598324.1| - 0.0018 18.4 9.7 0.09 13.0 1.8 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|336255217|ref|YP_004598324.1| - 0.0029 18.4 4.2 0.73 10.7 0.3 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|336255217|ref|YP_004598324.1| - 0.07 13.3 7.7 0.22 11.7 7.7 1.7 1 1 0 1 1 1 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S TNFR_c6 PF00020.18 gi|336255217|ref|YP_004598324.1| - 0.16 12.4 7.5 2.5 8.6 1.2 2.5 2 0 0 2 2 2 0 TNFR/NGFR cysteine-rich region Fer4_13 PF13370.6 gi|336255217|ref|YP_004598324.1| - 1.1 9.8 13.1 2.2 8.9 3.2 2.6 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Oxidored_q3 PF00499.20 gi|336255218|ref|YP_004598325.1| - 4.4e-21 75.1 3.0 5.8e-21 74.7 3.0 1.2 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DUF4040 PF13244.6 gi|336255218|ref|YP_004598325.1| - 0.009 16.1 12.5 0.012 15.7 12.5 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4040) DUF2339 PF10101.9 gi|336255218|ref|YP_004598325.1| - 0.014 14.0 6.3 0.015 13.9 6.3 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2339) DUF2530 PF10745.9 gi|336255218|ref|YP_004598325.1| - 0.052 13.8 3.5 0.067 13.4 3.3 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2530) DUF4191 PF13829.6 gi|336255218|ref|YP_004598325.1| - 0.19 11.0 4.2 0.22 10.8 4.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) Oxidored_q2 PF00420.24 gi|336255220|ref|YP_004598327.1| - 6e-23 80.5 9.0 7.3e-23 80.2 9.0 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L NicO PF03824.16 gi|336255220|ref|YP_004598327.1| - 0.032 13.6 4.7 0.034 13.5 4.7 1.1 1 0 0 1 1 1 0 High-affinity nickel-transport protein PEP-CTERM PF07589.11 gi|336255220|ref|YP_004598327.1| - 0.18 11.9 0.5 0.18 11.9 0.5 3.3 2 1 0 2 2 2 0 PEP-CTERM motif Proton_antipo_M PF00361.20 gi|336255221|ref|YP_004598328.1| - 1.7e-75 253.9 19.8 4.4e-75 252.6 19.8 1.7 1 0 0 1 1 1 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|336255221|ref|YP_004598328.1| - 3.9e-15 55.6 3.6 4.8e-15 55.4 0.1 3.0 3 0 0 3 3 3 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus NADH5_C PF06455.11 gi|336255221|ref|YP_004598328.1| - 0.0015 18.2 2.1 0.002 17.8 0.0 2.3 2 0 0 2 2 2 1 NADH dehydrogenase subunit 5 C-terminus DUF5310 PF17237.2 gi|336255221|ref|YP_004598328.1| - 0.0075 16.1 0.1 0.039 13.8 0.1 2.3 1 0 0 1 1 1 1 Family of unknown function (DUF5310) Proton_antipo_C PF01010.19 gi|336255221|ref|YP_004598328.1| - 0.013 15.2 0.0 0.032 13.9 0.0 1.6 1 1 0 1 1 1 0 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus Proton_antipo_M PF00361.20 gi|336255222|ref|YP_004598329.1| - 9.3e-75 251.5 26.7 9.3e-75 251.5 26.7 1.8 2 0 0 2 2 2 1 Proton-conducting membrane transporter Oxidored_q5_N PF01059.17 gi|336255222|ref|YP_004598329.1| - 1.9e-05 24.7 0.2 1.9e-05 24.7 0.2 3.4 4 1 0 5 5 5 1 NADH-ubiquinone oxidoreductase chain 4, amino terminus Proton_antipo_N PF00662.20 gi|336255222|ref|YP_004598329.1| - 0.014 15.4 0.2 0.069 13.2 0.2 2.3 1 0 0 1 1 1 0 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Proton_antipo_M PF00361.20 gi|336255223|ref|YP_004598330.1| - 5.3e-69 232.6 21.5 5.3e-69 232.6 21.5 1.8 2 0 0 2 2 2 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|336255223|ref|YP_004598330.1| - 2.7e-05 24.2 4.5 0.00013 21.9 4.5 2.3 1 0 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus TrkA_N PF02254.18 gi|336255224|ref|YP_004598331.1| - 3.1e-14 53.2 0.0 1e-13 51.6 0.0 1.9 1 0 0 1 1 1 1 TrkA-N domain DHHA1 PF02272.19 gi|336255224|ref|YP_004598331.1| - 6.6e-14 52.5 1.0 3.3e-13 50.2 0.3 2.5 4 0 0 4 4 4 1 DHHA1 domain DHH PF01368.20 gi|336255224|ref|YP_004598331.1| - 1.4e-12 47.7 0.0 2.9e-12 46.7 0.0 1.6 1 0 0 1 1 1 1 DHH family Sacchrp_dh_NADP PF03435.18 gi|336255224|ref|YP_004598331.1| - 0.0012 19.0 0.0 0.003 17.8 0.0 1.6 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain NAD_binding_10 PF13460.6 gi|336255224|ref|YP_004598331.1| - 0.012 15.5 0.4 0.012 15.5 0.4 2.8 2 1 1 3 3 3 0 NAD(P)H-binding ApbA PF02558.16 gi|336255224|ref|YP_004598331.1| - 0.083 12.5 0.0 0.15 11.7 0.0 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA DRTGG PF07085.12 gi|336255224|ref|YP_004598331.1| - 0.1 12.4 0.0 0.28 11.0 0.0 1.8 1 1 0 1 1 1 0 DRTGG domain NTP_transf_3 PF12804.7 gi|336255224|ref|YP_004598331.1| - 2.4 8.5 5.9 87 3.4 1.7 3.8 2 2 0 2 2 2 0 MobA-like NTP transferase domain Zn_Tnp_IS1595 PF12760.7 gi|336255225|ref|YP_004598332.1| - 0.0032 17.4 1.3 0.0043 17.0 1.3 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain Lar_restr_allev PF14354.6 gi|336255225|ref|YP_004598332.1| - 0.011 16.1 0.7 0.012 16.0 0.7 1.2 1 0 0 1 1 1 0 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.10 gi|336255225|ref|YP_004598332.1| - 0.04 14.0 3.0 0.57 10.4 0.2 2.1 2 0 0 2 2 2 0 Zinc ribbon domain DUF35_N PF12172.8 gi|336255225|ref|YP_004598332.1| - 0.066 13.1 0.7 0.066 13.1 0.7 2.1 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) HypA PF01155.19 gi|336255225|ref|YP_004598332.1| - 0.077 13.0 1.5 2.4 8.2 0.1 2.0 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn_Tnp_IS1 PF03811.13 gi|336255225|ref|YP_004598332.1| - 0.077 12.7 3.0 0.27 11.0 3.0 1.8 1 1 0 1 1 1 0 InsA N-terminal domain eIF-5_eIF-2B PF01873.17 gi|336255225|ref|YP_004598332.1| - 0.086 12.7 0.2 0.1 12.5 0.2 1.0 1 0 0 1 1 1 0 Domain found in IF2B/IF5 zf-Dof PF02701.15 gi|336255225|ref|YP_004598332.1| - 0.18 11.9 4.8 1.1 9.5 4.8 1.9 1 1 0 1 1 1 0 Dof domain, zinc finger TFIIS_C PF01096.18 gi|336255225|ref|YP_004598332.1| - 0.18 11.6 4.3 5.8 6.9 1.3 2.2 1 1 1 2 2 2 0 Transcription factor S-II (TFIIS) CBS PF00571.28 gi|336255226|ref|YP_004598333.1| - 5.1e-26 90.9 2.2 4.4e-12 46.3 0.1 2.7 2 0 0 2 2 2 2 CBS domain ParBc PF02195.18 gi|336255226|ref|YP_004598333.1| - 3.3e-10 40.1 0.1 9.1e-10 38.7 0.1 1.8 1 1 0 1 1 1 1 ParB-like nuclease domain ParBc_2 PF08857.11 gi|336255226|ref|YP_004598333.1| - 0.014 15.5 0.0 0.11 12.6 0.0 2.0 1 1 0 1 1 1 0 Putative ParB-like nuclease Dehyd-heme_bind PF09098.10 gi|336255226|ref|YP_004598333.1| - 0.068 12.8 0.0 0.12 12.0 0.0 1.5 1 0 0 1 1 1 0 Quinohemoprotein amine dehydrogenase A, alpha subunit, haem binding AMP-binding PF00501.28 gi|336255227|ref|YP_004598334.1| - 1.3e-90 304.1 0.1 1.5e-90 303.8 0.1 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|336255227|ref|YP_004598334.1| - 1.4e-24 86.8 0.6 3.1e-24 85.7 0.6 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|336255227|ref|YP_004598334.1| - 3.7e-12 46.0 3.8 3.7e-12 46.0 3.8 2.1 2 0 0 2 2 2 1 Acetyl-coenzyme A synthetase N-terminus HalOD1 PF18545.1 gi|336255228|ref|YP_004598335.1| - 0.051 13.8 1.0 4 7.8 0.0 3.9 3 1 2 5 5 5 0 Halobacterial output domain 1 polyprenyl_synt PF00348.17 gi|336255229|ref|YP_004598336.1| - 7.7e-57 192.3 0.0 9.2e-57 192.0 0.0 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase Peptidase_M28 PF04389.17 gi|336255230|ref|YP_004598337.1| - 1.1e-35 123.1 0.3 1.5e-35 122.7 0.3 1.2 1 0 0 1 1 1 1 Peptidase family M28 PA PF02225.22 gi|336255230|ref|YP_004598337.1| - 5.1e-15 55.3 0.0 1.2e-14 54.0 0.0 1.7 1 0 0 1 1 1 1 PA domain Peptidase_M42 PF05343.14 gi|336255230|ref|YP_004598337.1| - 1.1e-05 24.6 0.8 1.9e-05 23.8 0.8 1.3 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.28 gi|336255230|ref|YP_004598337.1| - 0.0002 21.1 0.1 0.00032 20.5 0.1 1.4 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 IgG_binding_B PF01378.17 gi|336255230|ref|YP_004598337.1| - 0.1 12.6 0.1 13 6.0 0.0 2.7 2 0 0 2 2 2 0 B domain NAD_kinase PF01513.21 gi|336255231|ref|YP_004598338.1| - 6.1e-19 68.3 1.0 7.7e-19 68.0 1.0 1.1 1 0 0 1 1 1 1 ATP-NAD kinase HhH-GPD PF00730.25 gi|336255233|ref|YP_004598340.1| - 6.7e-22 78.0 0.0 1.6e-21 76.7 0.0 1.6 2 0 0 2 2 2 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|336255233|ref|YP_004598340.1| - 9.9e-10 37.8 0.0 2.4e-09 36.6 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif EndIII_4Fe-2S PF10576.9 gi|336255233|ref|YP_004598340.1| - 1.8e-06 28.1 6.5 3.1e-06 27.3 6.5 1.4 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH_5 PF14520.6 gi|336255233|ref|YP_004598340.1| - 0.008 16.8 0.4 0.02 15.5 0.0 1.8 2 0 0 2 2 2 1 Helix-hairpin-helix domain LPD29 PF18847.1 gi|336255233|ref|YP_004598340.1| - 0.013 16.4 0.0 0.021 15.7 0.0 1.4 1 0 0 1 1 1 0 Large polyvalent protein associated domain 29 5_3_exonuc PF01367.20 gi|336255233|ref|YP_004598340.1| - 0.024 15.2 0.0 0.053 14.1 0.0 1.5 1 0 0 1 1 1 0 5'-3' exonuclease, C-terminal SAM fold DUF2400 PF09674.10 gi|336255233|ref|YP_004598340.1| - 0.19 11.7 0.0 0.57 10.1 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2400) MDD_C PF18376.1 gi|336255234|ref|YP_004598341.1| - 1.5e-06 28.1 0.1 2.4e-06 27.4 0.1 1.2 1 0 0 1 1 1 1 Mevalonate 5-diphosphate decarboxylase C-terminal domain GHMP_kinases_N PF00288.26 gi|336255234|ref|YP_004598341.1| - 9.2e-06 25.8 5.3 3.7e-05 23.9 5.5 1.9 1 1 1 2 2 2 1 GHMP kinases N terminal domain TarH PF02203.15 gi|336255234|ref|YP_004598341.1| - 0.01 15.8 1.2 0.01 15.8 1.2 1.8 2 0 0 2 2 2 0 Tar ligand binding domain homologue CPSase_L_D2 PF02786.17 gi|336255236|ref|YP_004598343.1| - 7.2e-93 309.9 0.0 5.2e-57 192.8 0.0 2.7 2 1 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_D3 PF02787.19 gi|336255236|ref|YP_004598343.1| - 5.2e-24 84.9 0.1 1.4e-23 83.5 0.1 1.8 1 0 0 1 1 1 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ATPgrasp_Ter PF15632.6 gi|336255236|ref|YP_004598343.1| - 1.3e-11 44.3 0.0 0.00022 21.0 0.0 2.7 2 0 0 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp PF02222.22 gi|336255236|ref|YP_004598343.1| - 1.2e-09 38.0 0.1 0.00011 21.8 0.0 2.7 3 0 0 3 3 3 2 ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|336255236|ref|YP_004598343.1| - 7.6e-09 35.4 0.0 1.2e-05 24.9 0.0 2.5 2 0 0 2 2 2 2 D-ala D-ala ligase C-terminus ATP-grasp_3 PF02655.14 gi|336255236|ref|YP_004598343.1| - 4.9e-07 29.9 0.0 0.012 15.6 0.0 2.5 2 0 0 2 2 2 2 ATP-grasp domain HDV_ag PF01517.18 gi|336255236|ref|YP_004598343.1| - 0.012 15.4 0.1 0.025 14.4 0.1 1.4 1 0 0 1 1 1 0 Hepatitis delta virus delta antigen GFO_IDH_MocA PF01408.22 gi|336255236|ref|YP_004598343.1| - 0.13 13.1 0.7 28 5.6 0.1 3.3 3 0 0 3 3 3 0 Oxidoreductase family, NAD-binding Rossmann fold B12-binding PF02310.19 gi|336255236|ref|YP_004598343.1| - 5.2 7.1 6.1 7.4 6.6 0.0 4.0 4 1 1 5 5 5 0 B12 binding domain Methyltransf_11 PF08241.12 gi|336255239|ref|YP_004598346.1| - 8.8e-11 42.3 0.0 1.5e-10 41.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|336255239|ref|YP_004598346.1| - 2.4e-09 37.8 0.1 6.6e-09 36.4 0.1 1.7 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|336255239|ref|YP_004598346.1| - 8.4e-05 22.5 0.0 0.00012 21.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|336255239|ref|YP_004598346.1| - 0.00012 22.7 0.1 0.00026 21.7 0.1 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_24 PF13578.6 gi|336255239|ref|YP_004598346.1| - 0.048 14.7 0.3 0.098 13.7 0.3 1.5 1 0 0 1 1 1 0 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|336255239|ref|YP_004598346.1| - 0.12 12.0 0.0 0.19 11.4 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 95 Aldo_ket_red PF00248.21 gi|336255240|ref|YP_004598347.1| - 2.3e-22 79.6 0.0 2.7e-22 79.3 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family EF-hand_10 PF14788.6 gi|336255242|ref|YP_004598349.1| - 0.021 14.7 0.7 1.3 9.0 0.1 2.3 2 0 0 2 2 2 0 EF hand Chordopox_A13L PF05961.11 gi|336255242|ref|YP_004598349.1| - 0.14 12.4 0.0 0.19 12.0 0.0 1.2 1 0 0 1 1 1 0 Chordopoxvirus A13L protein PYRIN PF02758.16 gi|336255242|ref|YP_004598349.1| - 0.16 12.2 0.0 0.2 11.8 0.0 1.2 1 0 0 1 1 1 0 PAAD/DAPIN/Pyrin domain Exosortase_EpsH PF09721.10 gi|336255243|ref|YP_004598350.1| - 9e-15 54.9 13.8 9e-15 54.9 13.8 1.5 1 1 0 1 1 1 1 Transmembrane exosortase (Exosortase_EpsH) DUF5336 PF17270.2 gi|336255243|ref|YP_004598350.1| - 0.011 15.3 0.6 0.011 15.3 0.6 2.7 3 0 0 3 3 3 0 Family of unknown function (DUF5336) BACON PF13004.7 gi|336255243|ref|YP_004598350.1| - 0.014 15.4 0.0 0.044 13.8 0.0 1.8 2 0 0 2 2 2 0 Putative binding domain, N-terminal Metallophos PF00149.28 gi|336255244|ref|YP_004598351.1| - 2.6e-06 28.1 0.2 6.6e-06 26.8 0.2 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|336255244|ref|YP_004598351.1| - 1.5e-05 25.2 0.2 2.2e-05 24.7 0.2 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Aldolase PF01081.19 gi|336255244|ref|YP_004598351.1| - 0.18 11.2 0.0 0.35 10.3 0.0 1.4 1 0 0 1 1 1 0 KDPG and KHG aldolase Amino_oxidase PF01593.24 gi|336255245|ref|YP_004598352.1| - 4.6e-47 161.3 1.4 5.5e-47 161.1 1.4 1.1 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|336255245|ref|YP_004598352.1| - 3e-15 56.2 0.4 9.9e-15 54.5 0.4 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|336255245|ref|YP_004598352.1| - 2.9e-09 37.0 12.3 4.8e-08 33.0 12.2 2.0 1 1 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|336255245|ref|YP_004598352.1| - 1.1e-07 31.5 2.2 1.4e-05 24.5 1.8 2.3 2 0 0 2 2 2 1 FAD binding domain FAD_binding_2 PF00890.24 gi|336255245|ref|YP_004598352.1| - 2.6e-06 26.8 3.8 1.7e-05 24.1 2.1 2.2 2 0 0 2 2 2 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|336255245|ref|YP_004598352.1| - 4.6e-06 26.1 3.0 0.0001 21.7 0.5 2.6 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|336255245|ref|YP_004598352.1| - 7.7e-06 24.9 0.0 0.00034 19.4 0.0 2.1 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox PF00070.27 gi|336255245|ref|YP_004598352.1| - 0.00043 20.8 0.9 0.0097 16.5 1.7 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase F420_oxidored PF03807.17 gi|336255245|ref|YP_004598352.1| - 0.0029 18.2 0.5 0.0076 16.8 0.5 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Thi4 PF01946.17 gi|336255245|ref|YP_004598352.1| - 0.0037 16.5 0.2 0.0072 15.6 0.2 1.4 1 0 0 1 1 1 1 Thi4 family NAD_binding_9 PF13454.6 gi|336255245|ref|YP_004598352.1| - 0.0055 16.7 3.3 0.12 12.4 0.4 2.6 2 0 0 2 2 2 1 FAD-NAD(P)-binding NAD_binding_7 PF13241.6 gi|336255245|ref|YP_004598352.1| - 0.0058 17.1 0.3 0.13 12.7 0.0 2.3 2 0 0 2 2 2 1 Putative NAD(P)-binding FAD_oxidored PF12831.7 gi|336255245|ref|YP_004598352.1| - 0.0095 15.3 4.0 0.019 14.3 4.0 1.5 1 0 0 1 1 1 1 FAD dependent oxidoreductase AlaDh_PNT_C PF01262.21 gi|336255245|ref|YP_004598352.1| - 0.011 15.0 0.3 0.021 14.1 0.3 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Trp_halogenase PF04820.14 gi|336255245|ref|YP_004598352.1| - 0.14 10.9 1.0 0.28 10.0 1.0 1.4 1 0 0 1 1 1 0 Tryptophan halogenase FMO-like PF00743.19 gi|336255245|ref|YP_004598352.1| - 0.23 9.8 0.0 0.35 9.2 0.0 1.2 1 0 0 1 1 1 0 Flavin-binding monooxygenase-like GIDA PF01134.22 gi|336255245|ref|YP_004598352.1| - 0.24 10.4 4.2 0.077 12.1 1.2 1.6 2 0 0 2 2 2 0 Glucose inhibited division protein A Pyr_redox_3 PF13738.6 gi|336255245|ref|YP_004598352.1| - 0.35 10.1 0.6 0.72 9.0 0.1 1.7 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|336255245|ref|YP_004598352.1| - 0.77 8.7 3.5 0.88 8.5 0.3 2.1 2 0 0 2 2 2 0 Lycopene cyclase protein Gluconate_2-dh3 PF13618.6 gi|336255246|ref|YP_004598353.1| - 8.9e-44 149.0 0.1 8.9e-44 149.0 0.1 1.5 2 0 0 2 2 2 1 Gluconate 2-dehydrogenase subunit 3 GMC_oxred_C PF05199.13 gi|336255247|ref|YP_004598354.1| - 1.6e-18 67.6 0.0 2.8e-18 66.8 0.0 1.4 1 0 0 1 1 1 1 GMC oxidoreductase GMC_oxred_N PF00732.19 gi|336255247|ref|YP_004598354.1| - 1.6e-09 37.6 0.0 2.4e-07 30.4 0.0 2.2 2 0 0 2 2 2 2 GMC oxidoreductase NAD_binding_8 PF13450.6 gi|336255247|ref|YP_004598354.1| - 0.11 12.7 0.1 0.38 11.0 0.1 1.9 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 gi|336255247|ref|YP_004598354.1| - 0.15 11.2 0.0 0.25 10.5 0.0 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|336255247|ref|YP_004598354.1| - 0.22 10.7 0.1 0.46 9.7 0.1 1.5 1 0 0 1 1 1 0 Thi4 family DUF1382 PF07131.11 gi|336255249|ref|YP_004598356.1| - 0.4 10.7 1.5 0.54 10.3 1.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1382) ExoD PF06055.12 gi|336255249|ref|YP_004598356.1| - 0.6 9.5 7.5 0.63 9.4 7.5 1.0 1 0 0 1 1 1 0 Exopolysaccharide synthesis, ExoD DUF3953 PF13129.6 gi|336255249|ref|YP_004598356.1| - 2.7 7.8 8.3 6.3 6.7 2.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3953) Gram_pos_anchor PF00746.21 gi|336255249|ref|YP_004598356.1| - 4.3 7.4 7.5 1.5 8.8 1.8 2.0 2 0 0 2 2 2 0 LPXTG cell wall anchor motif Lactamase_B PF00753.27 gi|336255250|ref|YP_004598357.1| - 4.9e-23 82.2 10.6 5.9e-23 81.9 10.6 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|336255250|ref|YP_004598357.1| - 1.7e-06 27.7 0.7 2.5e-06 27.1 0.7 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain DsbD PF02683.15 gi|336255251|ref|YP_004598358.1| - 2.7e-11 43.8 12.3 3.5e-11 43.4 12.3 1.1 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DsbD_2 PF13386.6 gi|336255251|ref|YP_004598358.1| - 0.38 10.7 17.8 3.4 7.5 17.7 2.3 1 1 0 1 1 1 0 Cytochrome C biogenesis protein transmembrane region LMBR1 PF04791.16 gi|336255251|ref|YP_004598358.1| - 1.9 7.3 5.1 0.4 9.5 1.4 1.6 2 0 0 2 2 2 0 LMBR1-like membrane protein Redoxin PF08534.10 gi|336255252|ref|YP_004598359.1| - 0.00036 20.3 0.0 0.00047 19.9 0.0 1.2 1 0 0 1 1 1 1 Redoxin TAT_signal PF10518.9 gi|336255252|ref|YP_004598359.1| - 0.35 10.8 2.7 0.74 9.8 2.7 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Lactamase_B PF00753.27 gi|336255253|ref|YP_004598360.1| - 6.4e-25 88.3 7.8 6.4e-25 88.3 7.8 2.3 2 1 0 2 2 2 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|336255253|ref|YP_004598360.1| - 4.1e-06 26.5 1.9 7.2e-06 25.6 0.5 2.1 2 1 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|336255253|ref|YP_004598360.1| - 0.14 12.0 0.1 0.48 10.3 0.0 2.1 2 0 0 2 2 2 0 Beta-lactamase superfamily domain GatB_N PF02934.15 gi|336255255|ref|YP_004598362.1| - 3.5e-99 331.6 0.0 5.5e-99 331.0 0.0 1.2 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|336255255|ref|YP_004598362.1| - 1.4e-41 141.8 0.3 2.3e-41 141.1 0.0 1.5 2 0 0 2 2 2 1 GatB domain DUF3046 PF11248.8 gi|336255255|ref|YP_004598362.1| - 0.052 13.9 0.1 0.33 11.4 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3046) TAT_signal PF10518.9 gi|336255256|ref|YP_004598363.1| - 0.033 14.1 1.2 0.051 13.4 1.2 1.3 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence SDF PF00375.18 gi|336255257|ref|YP_004598364.1| - 9.6e-113 377.1 36.0 1.1e-112 377.0 36.0 1.0 1 0 0 1 1 1 1 Sodium:dicarboxylate symporter family DUF1358 PF07096.11 gi|336255257|ref|YP_004598364.1| - 0.034 14.1 0.9 0.11 12.5 0.9 1.9 1 0 0 1 1 1 0 Protein of unknown function (DUF1358) BPD_transp_1 PF00528.22 gi|336255258|ref|YP_004598365.1| - 5.3e-15 55.6 10.9 7.7e-15 55.1 10.9 1.3 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component DUF3104 PF11302.8 gi|336255258|ref|YP_004598365.1| - 0.19 11.4 1.4 0.85 9.4 0.1 2.4 3 0 0 3 3 3 0 Protein of unknown function (DUF3104) BPD_transp_1 PF00528.22 gi|336255259|ref|YP_004598366.1| - 6.2e-17 61.9 10.6 1.2e-16 61.0 10.6 1.5 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component Rossmann-like PF10727.9 gi|336255259|ref|YP_004598366.1| - 0.048 13.5 0.5 0.13 12.2 0.5 1.7 1 0 0 1 1 1 0 Rossmann-like domain MotA_ExbB PF01618.16 gi|336255259|ref|YP_004598366.1| - 0.19 11.5 3.6 0.21 11.3 0.2 2.4 2 0 0 2 2 2 0 MotA/TolQ/ExbB proton channel family ThiF PF00899.21 gi|336255259|ref|YP_004598366.1| - 0.46 9.8 2.8 0.51 9.7 1.5 1.7 1 1 1 2 2 2 0 ThiF family ABC_tran PF00005.27 gi|336255260|ref|YP_004598367.1| - 5.7e-37 127.3 0.0 7.5e-37 126.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|336255260|ref|YP_004598367.1| - 1.5e-07 31.6 0.0 0.003 17.4 0.0 2.2 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|336255260|ref|YP_004598367.1| - 0.00046 20.5 0.1 0.0057 16.9 0.1 2.2 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|336255260|ref|YP_004598367.1| - 0.0012 18.5 0.0 0.0023 17.6 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_33 PF13671.6 gi|336255260|ref|YP_004598367.1| - 0.0019 18.4 0.0 0.0079 16.4 0.0 2.0 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|336255260|ref|YP_004598367.1| - 0.0024 17.8 0.1 0.0098 15.8 0.0 1.8 2 0 0 2 2 2 1 RsgA GTPase Mg_chelatase PF01078.21 gi|336255260|ref|YP_004598367.1| - 0.0062 15.9 0.0 0.01 15.2 0.0 1.3 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_16 PF13191.6 gi|336255260|ref|YP_004598367.1| - 0.0071 16.7 0.1 0.022 15.2 0.1 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|336255260|ref|YP_004598367.1| - 0.017 14.8 0.1 0.053 13.2 0.1 1.9 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 gi|336255260|ref|YP_004598367.1| - 0.022 15.0 0.1 0.37 11.1 0.1 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit MMR_HSR1 PF01926.23 gi|336255260|ref|YP_004598367.1| - 0.032 14.3 0.0 0.65 10.1 0.0 2.3 2 1 0 2 2 2 0 50S ribosome-binding GTPase AAA PF00004.29 gi|336255260|ref|YP_004598367.1| - 0.06 13.8 0.0 3.7 8.0 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) SMC_N PF02463.19 gi|336255260|ref|YP_004598367.1| - 0.15 11.5 0.1 16 4.9 0.0 2.1 1 1 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_23 PF13476.6 gi|336255260|ref|YP_004598367.1| - 0.17 12.4 0.0 0.3 11.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain Phosphonate-bd PF12974.7 gi|336255261|ref|YP_004598368.1| - 3.5e-50 170.9 0.0 4.6e-50 170.5 0.0 1.1 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein SBP_bac_11 PF13531.6 gi|336255261|ref|YP_004598368.1| - 0.019 14.7 0.0 0.034 13.9 0.0 1.5 1 1 0 1 1 1 0 Bacterial extracellular solute-binding protein OpuAC PF04069.12 gi|336255261|ref|YP_004598368.1| - 0.026 14.1 0.0 0.12 11.9 0.0 1.9 1 1 0 2 2 2 0 Substrate binding domain of ABC-type glycine betaine transport system PT-VENN PF04829.13 gi|336255261|ref|YP_004598368.1| - 8 6.6 7.0 11 6.2 1.1 2.8 3 0 0 3 3 3 0 Pre-toxin domain with VENN motif AMP-binding PF00501.28 gi|336255262|ref|YP_004598369.1| - 1.7e-76 257.5 0.0 2.4e-76 257.1 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|336255262|ref|YP_004598369.1| - 2.7e-24 85.9 0.2 5.9e-24 84.9 0.2 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|336255262|ref|YP_004598369.1| - 4.7e-10 39.2 0.0 4.7e-10 39.2 0.0 3.8 4 0 0 4 4 4 1 Acetyl-coenzyme A synthetase N-terminus SlyX PF04102.12 gi|336255263|ref|YP_004598370.1| - 0.00016 22.2 3.9 0.00025 21.6 3.9 1.6 1 1 0 1 1 1 1 SlyX Tropomyosin PF00261.20 gi|336255263|ref|YP_004598370.1| - 0.00025 20.5 1.1 0.00025 20.5 1.1 2.0 2 0 0 2 2 2 1 Tropomyosin Lebercilin PF15619.6 gi|336255263|ref|YP_004598370.1| - 0.0057 16.3 0.6 0.0068 16.1 0.6 1.1 1 0 0 1 1 1 1 Ciliary protein causing Leber congenital amaurosis disease IFT57 PF10498.9 gi|336255263|ref|YP_004598370.1| - 0.0076 15.3 0.1 0.0079 15.2 0.1 1.1 1 0 0 1 1 1 1 Intra-flagellar transport protein 57 Striatin PF08232.12 gi|336255263|ref|YP_004598370.1| - 0.026 15.1 1.4 0.031 14.9 1.4 1.1 1 0 0 1 1 1 0 Striatin family Herpes_UL6 PF01763.16 gi|336255263|ref|YP_004598370.1| - 0.034 12.7 0.2 0.036 12.6 0.2 1.0 1 0 0 1 1 1 0 Herpesvirus UL6 like DUF4407 PF14362.6 gi|336255263|ref|YP_004598370.1| - 0.05 13.0 4.9 0.057 12.8 4.9 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) TMF_DNA_bd PF12329.8 gi|336255263|ref|YP_004598370.1| - 0.098 12.7 1.3 0.18 11.8 1.3 1.5 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding IFP_35_N PF07334.13 gi|336255263|ref|YP_004598370.1| - 0.12 12.4 0.1 0.2 11.8 0.1 1.5 1 0 0 1 1 1 0 Interferon-induced 35 kDa protein (IFP 35) N-terminus MscS_porin PF12795.7 gi|336255263|ref|YP_004598370.1| - 0.14 11.7 6.0 0.17 11.4 0.8 1.9 1 1 1 2 2 2 0 Mechanosensitive ion channel porin domain bZIP_1 PF00170.21 gi|336255263|ref|YP_004598370.1| - 0.14 12.3 0.8 0.2 11.8 0.8 1.2 1 0 0 1 1 1 0 bZIP transcription factor SKA1 PF07160.12 gi|336255263|ref|YP_004598370.1| - 0.16 11.8 0.6 0.21 11.4 0.6 1.2 1 0 0 1 1 1 0 Spindle and kinetochore-associated protein 1 PspB PF06667.12 gi|336255263|ref|YP_004598370.1| - 0.18 11.9 1.2 0.48 10.5 1.2 1.7 1 1 0 1 1 1 0 Phage shock protein B FlaC_arch PF05377.11 gi|336255263|ref|YP_004598370.1| - 0.18 12.2 1.0 0.32 11.4 1.0 1.3 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) Spc7 PF08317.11 gi|336255263|ref|YP_004598370.1| - 0.25 10.2 2.8 0.32 9.8 2.8 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein CCDC53 PF10152.9 gi|336255263|ref|YP_004598370.1| - 0.59 10.5 5.2 0.8 10.1 5.2 1.1 1 0 0 1 1 1 0 Subunit CCDC53 of WASH complex LPP PF04728.13 gi|336255263|ref|YP_004598370.1| - 1.2 9.6 0.1 1.2 9.6 0.1 2.4 2 1 0 2 2 1 0 Lipoprotein leucine-zipper DUF4140 PF13600.6 gi|336255263|ref|YP_004598370.1| - 3.9 8.0 10.1 0.64 10.5 0.9 2.1 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) ABC_tran_CTD PF16326.5 gi|336255263|ref|YP_004598370.1| - 5.6 7.3 10.1 2.6e+02 2.0 10.1 2.4 1 1 0 1 1 1 0 ABC transporter C-terminal domain SMC_N PF02463.19 gi|336255264|ref|YP_004598371.1| - 6.9e-41 140.1 85.0 7.6e-40 136.7 85.0 2.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain SMC_hinge PF06470.13 gi|336255264|ref|YP_004598371.1| - 1e-30 106.4 0.0 2.9e-30 105.0 0.0 1.9 1 0 0 1 1 1 1 SMC proteins Flexible Hinge Domain AAA_23 PF13476.6 gi|336255264|ref|YP_004598371.1| - 2.2e-13 51.1 24.4 2.2e-13 51.1 24.4 9.3 2 2 1 3 3 1 1 AAA domain AAA_21 PF13304.6 gi|336255264|ref|YP_004598371.1| - 2.1e-12 47.5 0.1 1.1e-06 28.7 0.0 5.7 4 2 2 6 6 4 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_13 PF13166.6 gi|336255264|ref|YP_004598371.1| - 6.5e-09 35.0 115.6 0.011 14.4 29.4 6.1 3 2 3 6 6 6 5 AAA domain AAA_15 PF13175.6 gi|336255264|ref|YP_004598371.1| - 1.6e-08 34.7 17.2 1.6e-08 34.7 17.2 5.2 2 2 1 4 4 2 2 AAA ATPase domain Atg14 PF10186.9 gi|336255264|ref|YP_004598371.1| - 4.1e-08 32.7 99.8 0.0077 15.4 16.4 7.3 2 2 5 7 7 7 5 Vacuolar sorting 38 and autophagy-related subunit 14 DUF3584 PF12128.8 gi|336255264|ref|YP_004598371.1| - 4.5e-08 31.2 66.4 2.9e-07 28.5 53.5 4.1 2 2 2 4 4 4 3 Protein of unknown function (DUF3584) Spc7 PF08317.11 gi|336255264|ref|YP_004598371.1| - 6.6e-08 31.8 158.3 0.011 14.7 29.1 9.0 2 2 5 8 8 8 5 Spc7 kinetochore protein AAA_29 PF13555.6 gi|336255264|ref|YP_004598371.1| - 1.9e-06 27.5 0.4 8.7e-06 25.4 0.0 2.1 2 0 0 2 2 2 1 P-loop containing region of AAA domain DUF1664 PF07889.12 gi|336255264|ref|YP_004598371.1| - 3.2e-06 27.2 87.7 0.00077 19.5 5.2 10.1 3 2 6 11 11 11 7 Protein of unknown function (DUF1664) NPV_P10 PF05531.12 gi|336255264|ref|YP_004598371.1| - 7.5e-05 23.1 55.6 0.014 15.9 2.9 10.5 5 2 5 11 11 9 3 Nucleopolyhedrovirus P10 protein EzrA PF06160.12 gi|336255264|ref|YP_004598371.1| - 0.0001 20.6 19.8 0.0001 20.6 19.8 5.2 2 2 3 5 5 5 2 Septation ring formation regulator, EzrA ZapB PF06005.12 gi|336255264|ref|YP_004598371.1| - 0.00025 21.4 6.4 0.00025 21.4 6.4 13.2 4 3 6 10 10 7 2 Cell division protein ZapB TMPIT PF07851.13 gi|336255264|ref|YP_004598371.1| - 0.00038 19.8 5.0 0.00038 19.8 5.0 7.9 2 2 6 8 8 8 3 TMPIT-like protein DUF4407 PF14362.6 gi|336255264|ref|YP_004598371.1| - 0.00081 18.8 105.9 0.015 14.6 16.3 6.2 2 2 3 5 5 5 2 Domain of unknown function (DUF4407) GAS PF13851.6 gi|336255264|ref|YP_004598371.1| - 0.00089 18.7 20.1 0.00089 18.7 20.1 8.5 3 2 4 8 8 8 4 Growth-arrest specific micro-tubule binding CENP-F_leu_zip PF10473.9 gi|336255264|ref|YP_004598371.1| - 0.00091 19.3 178.1 0.04 13.9 24.1 9.1 2 2 7 9 9 9 4 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF3450 PF11932.8 gi|336255264|ref|YP_004598371.1| - 0.0012 18.2 8.1 0.0012 18.2 8.1 9.6 3 2 7 10 10 9 1 Protein of unknown function (DUF3450) Laminin_II PF06009.12 gi|336255264|ref|YP_004598371.1| - 0.0028 17.7 5.0 0.0028 17.7 5.0 9.1 5 2 5 11 11 10 3 Laminin Domain II ATG16 PF08614.11 gi|336255264|ref|YP_004598371.1| - 0.0029 17.9 25.7 0.0029 17.9 25.7 9.1 2 2 5 8 8 8 3 Autophagy protein 16 (ATG16) UPF0242 PF06785.11 gi|336255264|ref|YP_004598371.1| - 0.0043 17.2 159.1 0.26 11.4 28.6 7.6 3 2 4 7 7 7 4 Uncharacterised protein family (UPF0242) N-terminus DUF724 PF05266.14 gi|336255264|ref|YP_004598371.1| - 0.0059 16.5 18.3 0.0059 16.5 18.3 7.8 3 2 5 8 8 8 3 Protein of unknown function (DUF724) TolA_bind_tri PF16331.5 gi|336255264|ref|YP_004598371.1| - 0.0094 16.0 2.8 0.0094 16.0 2.8 9.8 6 4 4 11 11 9 1 TolA binding protein trimerisation Baculo_PEP_C PF04513.12 gi|336255264|ref|YP_004598371.1| - 0.034 14.2 34.5 0.64 10.0 4.1 7.2 4 2 3 7 7 7 0 Baculovirus polyhedron envelope protein, PEP, C terminus APG6_N PF17675.1 gi|336255264|ref|YP_004598371.1| - 0.062 13.8 193.7 0.44 11.1 25.2 9.3 3 2 5 8 8 8 0 Apg6 coiled-coil region T3SSipB PF16535.5 gi|336255264|ref|YP_004598371.1| - 0.066 13.7 79.5 0.69 10.4 5.6 9.8 3 2 7 10 10 10 0 Type III cell invasion protein SipB DUF5082 PF16888.5 gi|336255264|ref|YP_004598371.1| - 0.087 13.1 112.4 2.6 8.4 6.4 10.1 4 2 1 6 6 6 0 Domain of unknown function (DUF5082) Fib_alpha PF08702.10 gi|336255264|ref|YP_004598371.1| - 0.098 12.8 83.4 0.41 10.8 10.3 7.7 3 2 4 7 7 7 0 Fibrinogen alpha/beta chain family Fez1 PF06818.15 gi|336255264|ref|YP_004598371.1| - 0.26 11.7 142.2 0.018 15.5 16.1 7.5 2 2 3 5 5 4 0 Fez1 MscS_porin PF12795.7 gi|336255264|ref|YP_004598371.1| - 0.69 9.4 118.1 0.015 14.9 22.1 6.5 3 2 2 6 6 5 0 Mechanosensitive ion channel porin domain DUF745 PF05335.13 gi|336255264|ref|YP_004598371.1| - 0.83 9.3 76.3 0.016 15.0 13.7 6.6 5 3 1 6 6 6 0 Protein of unknown function (DUF745) LPP PF04728.13 gi|336255264|ref|YP_004598371.1| - 0.88 10.0 54.9 8.8 6.8 0.4 11.6 8 4 3 11 11 10 0 Lipoprotein leucine-zipper Prominin PF05478.11 gi|336255264|ref|YP_004598371.1| - 0.92 7.4 58.9 0.0067 14.5 3.4 4.7 2 2 2 4 4 4 0 Prominin TPR_MLP1_2 PF07926.12 gi|336255264|ref|YP_004598371.1| - 5.2 7.1 153.3 0.034 14.2 15.2 9.6 3 2 6 9 9 9 0 TPR/MLP1/MLP2-like protein SMC_ScpA PF02616.14 gi|336255265|ref|YP_004598372.1| - 1e-13 51.7 0.0 7.1e-09 35.9 0.0 2.3 2 0 0 2 2 2 2 Segregation and condensation protein ScpA Rad21_Rec8 PF04824.16 gi|336255265|ref|YP_004598372.1| - 0.17 11.2 0.0 0.31 10.4 0.0 1.3 1 0 0 1 1 1 0 Conserved region of Rad21 / Rec8 like protein DUF4131 PF13567.6 gi|336255266|ref|YP_004598373.1| - 0.029 14.0 1.7 0.046 13.4 1.7 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) zinc_ribbon_15 PF17032.5 gi|336255266|ref|YP_004598373.1| - 0.13 13.0 0.0 0.27 12.0 0.0 1.6 2 0 0 2 2 2 0 zinc-ribbon family UPF0370 PF13980.6 gi|336255266|ref|YP_004598373.1| - 0.42 10.7 1.2 0.75 9.9 1.2 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0370) MCPsignal PF00015.21 gi|336255267|ref|YP_004598374.1| - 6e-38 130.3 56.2 2.1e-35 122.1 26.7 3.3 1 1 2 3 3 3 3 Methyl-accepting chemotaxis protein (MCP) signalling domain PAS PF00989.25 gi|336255267|ref|YP_004598374.1| - 2.6e-13 49.9 0.0 1.1e-12 48.0 0.0 2.1 1 0 0 1 1 1 1 PAS fold PAS_4 PF08448.10 gi|336255267|ref|YP_004598374.1| - 3e-12 46.8 0.5 3e-12 46.8 0.5 2.2 2 0 0 2 2 2 1 PAS fold PAS_9 PF13426.7 gi|336255267|ref|YP_004598374.1| - 1.2e-10 41.6 0.1 5.9e-10 39.3 0.0 2.3 2 1 1 3 3 2 1 PAS domain PAS_8 PF13188.7 gi|336255267|ref|YP_004598374.1| - 4e-05 23.5 0.0 0.00026 20.9 0.0 2.5 1 1 0 1 1 1 1 PAS domain DUF948 PF06103.11 gi|336255267|ref|YP_004598374.1| - 0.0021 18.3 40.6 0.28 11.4 5.4 5.5 1 1 2 3 3 2 2 Bacterial protein of unknown function (DUF948) Laminin_II PF06009.12 gi|336255267|ref|YP_004598374.1| - 0.0031 17.5 36.6 0.097 12.7 6.6 4.3 1 1 2 4 4 4 3 Laminin Domain II DUF1664 PF07889.12 gi|336255267|ref|YP_004598374.1| - 0.011 15.8 35.4 1.6 8.8 4.9 4.5 1 1 4 5 5 5 0 Protein of unknown function (DUF1664) NPV_P10 PF05531.12 gi|336255267|ref|YP_004598374.1| - 0.028 14.9 1.9 0.028 14.9 1.9 5.5 2 2 2 5 5 5 0 Nucleopolyhedrovirus P10 protein SesA PF17107.5 gi|336255267|ref|YP_004598374.1| - 0.034 14.3 22.2 0.047 13.9 2.0 3.7 1 1 2 3 3 3 0 N-terminal domain on NACHT_NTPase and P-loop NTPases GAS PF13851.6 gi|336255267|ref|YP_004598374.1| - 0.047 13.0 16.6 0.27 10.6 6.9 2.2 2 0 0 2 2 2 0 Growth-arrest specific micro-tubule binding BLOC1_2 PF10046.9 gi|336255267|ref|YP_004598374.1| - 0.055 13.8 27.4 2.2 8.7 1.7 5.0 1 1 4 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 KxDL PF10241.9 gi|336255267|ref|YP_004598374.1| - 0.072 13.4 12.7 0.62 10.4 0.7 4.6 1 1 3 6 6 6 0 Uncharacterized conserved protein Prominin PF05478.11 gi|336255267|ref|YP_004598374.1| - 0.1 10.6 20.1 0.29 9.0 12.6 2.0 1 1 1 2 2 2 0 Prominin TMPIT PF07851.13 gi|336255267|ref|YP_004598374.1| - 0.12 11.6 17.6 0.081 12.2 0.7 3.2 1 1 3 4 4 4 0 TMPIT-like protein Fib_alpha PF08702.10 gi|336255267|ref|YP_004598374.1| - 0.56 10.4 24.0 0.39 10.9 5.7 4.0 1 1 3 4 4 4 0 Fibrinogen alpha/beta chain family CdvA PF18822.1 gi|336255267|ref|YP_004598374.1| - 0.66 9.8 18.4 1 9.2 5.3 3.9 2 2 0 3 3 3 0 CdvA-like coiled-coil domain PHP_C PF13263.6 gi|336255267|ref|YP_004598374.1| - 0.98 9.2 7.6 0.58 10.0 0.3 3.7 3 0 0 3 3 3 0 PHP-associated T3SSipB PF16535.5 gi|336255267|ref|YP_004598374.1| - 0.99 9.9 33.8 2.5 8.6 1.6 3.2 1 1 2 3 3 3 0 Type III cell invasion protein SipB Vip3A_N PF12495.8 gi|336255267|ref|YP_004598374.1| - 1.1 9.1 8.4 0.71 9.7 0.2 3.1 1 1 3 4 4 4 0 Vegetative insecticide protein 3A N terminal DUF4559 PF15112.6 gi|336255267|ref|YP_004598374.1| - 1.3 8.6 25.2 2.3 7.8 10.3 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4559) DUF883 PF05957.13 gi|336255267|ref|YP_004598374.1| - 1.4 9.6 35.2 0.19 12.4 6.7 4.7 2 1 2 4 4 4 0 Bacterial protein of unknown function (DUF883) Dor1 PF04124.12 gi|336255267|ref|YP_004598374.1| - 1.8 7.2 21.2 0.41 9.3 10.3 2.9 2 2 0 2 2 2 0 Dor1-like family Spc7 PF08317.11 gi|336255267|ref|YP_004598374.1| - 3.3 6.5 35.5 1 8.2 11.7 3.1 1 1 2 3 3 3 0 Spc7 kinetochore protein FUSC PF04632.12 gi|336255267|ref|YP_004598374.1| - 3.4 6.1 18.1 1.9 6.9 7.4 2.2 1 1 0 2 2 2 0 Fusaric acid resistance protein family ING PF12998.7 gi|336255267|ref|YP_004598374.1| - 4.7 7.9 12.4 15 6.2 1.4 3.8 1 1 2 3 3 3 0 Inhibitor of growth proteins N-terminal histone-binding ApoO PF09769.9 gi|336255267|ref|YP_004598374.1| - 5.2 7.1 13.0 1.4 8.9 0.4 3.8 2 2 1 4 4 4 0 Apolipoprotein O YkyA PF10368.9 gi|336255267|ref|YP_004598374.1| - 5.2 6.7 34.6 2.7 7.6 11.8 3.5 1 1 1 3 3 3 0 Putative cell-wall binding lipoprotein Laminin_I PF06008.14 gi|336255267|ref|YP_004598374.1| - 5.5 6.6 37.0 2.6 7.7 14.4 3.8 1 1 3 4 4 4 0 Laminin Domain I APG17 PF04108.12 gi|336255267|ref|YP_004598374.1| - 6.3 5.8 30.0 4.6 6.3 4.3 3.5 1 1 2 3 3 3 0 Autophagy protein Apg17 Rx_N PF18052.1 gi|336255267|ref|YP_004598374.1| - 6.6 7.1 27.0 0.47 10.8 5.8 5.1 1 1 3 5 5 5 0 Rx N-terminal domain Spectrin PF00435.21 gi|336255267|ref|YP_004598374.1| - 6.6 7.3 25.4 1.2 9.6 2.1 4.5 1 1 4 5 5 5 0 Spectrin repeat Syntaxin-6_N PF09177.11 gi|336255267|ref|YP_004598374.1| - 8.3 7.0 30.0 1.3 9.6 3.4 4.3 2 2 2 4 4 4 0 Syntaxin 6, N-terminal AIP3 PF03915.13 gi|336255267|ref|YP_004598374.1| - 9.2 5.2 32.6 10 5.1 10.7 2.7 1 1 1 2 2 2 0 Actin interacting protein 3 DUF745 PF05335.13 gi|336255267|ref|YP_004598374.1| - 9.4 5.9 37.9 1.5 8.6 7.1 4.0 1 1 3 4 4 4 0 Protein of unknown function (DUF745) PNP_UDP_1 PF01048.20 gi|336255268|ref|YP_004598375.1| - 1.3e-45 155.5 0.2 1.5e-45 155.3 0.2 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily MatE PF01554.18 gi|336255269|ref|YP_004598376.1| - 1.1e-54 184.4 35.6 4e-30 104.6 8.7 2.8 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.6 gi|336255269|ref|YP_004598376.1| - 6.4e-12 45.7 21.2 6.3e-11 42.5 4.4 4.4 4 2 0 4 4 4 2 Polysaccharide biosynthesis C-terminal domain MurJ PF03023.14 gi|336255269|ref|YP_004598376.1| - 8.9e-06 24.6 8.0 8.9e-06 24.6 8.0 2.4 1 1 1 2 2 2 1 Lipid II flippase MurJ DUF4191 PF13829.6 gi|336255269|ref|YP_004598376.1| - 1.3 8.3 6.8 0.18 11.1 2.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4191) DUF2070 PF09843.9 gi|336255269|ref|YP_004598376.1| - 1.5 7.0 20.4 0.058 11.7 10.2 2.4 1 1 1 2 2 2 0 Predicted membrane protein (DUF2070) Hydrolase PF00702.26 gi|336255270|ref|YP_004598377.1| - 1.2e-36 127.0 1.3 1.2e-36 127.0 1.3 2.0 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase E1-E2_ATPase PF00122.20 gi|336255270|ref|YP_004598377.1| - 1.1e-35 122.8 4.0 1.1e-35 122.8 4.0 2.3 2 0 0 2 2 2 1 E1-E2 ATPase HMA PF00403.26 gi|336255270|ref|YP_004598377.1| - 2.1e-09 37.7 0.0 1e-08 35.5 0.0 2.2 2 0 0 2 2 2 1 Heavy-metal-associated domain Rad50_zn_hook PF04423.14 gi|336255270|ref|YP_004598377.1| - 0.018 14.9 0.2 0.031 14.1 0.2 1.3 1 0 0 1 1 1 0 Rad50 zinc hook motif HAD PF12710.7 gi|336255270|ref|YP_004598377.1| - 0.036 14.5 0.8 0.31 11.4 0.0 2.9 2 1 0 2 2 2 0 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|336255270|ref|YP_004598377.1| - 0.055 13.2 0.0 0.28 10.9 0.1 1.9 2 0 0 2 2 2 0 haloacid dehalogenase-like hydrolase Pribosyltran PF00156.27 gi|336255271|ref|YP_004598378.1| - 1.6e-17 63.5 0.0 2.2e-17 63.0 0.0 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|336255271|ref|YP_004598378.1| - 0.0024 17.3 0.0 0.0033 16.9 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Trypsin_2 PF13365.6 gi|336255272|ref|YP_004598379.1| - 0.019 15.9 2.5 0.068 14.1 2.5 2.0 1 1 0 1 1 1 0 Trypsin-like peptidase domain Peptidase_S32 PF05579.13 gi|336255272|ref|YP_004598379.1| - 0.023 13.9 0.1 0.052 12.7 0.1 1.5 2 0 0 2 2 2 0 Equine arteritis virus serine endopeptidase S32 Trypsin PF00089.26 gi|336255272|ref|YP_004598379.1| - 0.037 13.8 0.0 0.062 13.1 0.0 1.3 1 0 0 1 1 1 0 Trypsin ThiC_Rad_SAM PF01964.18 gi|336255273|ref|YP_004598380.1| - 3.9e-193 641.9 0.1 4.5e-193 641.7 0.1 1.0 1 0 0 1 1 1 1 Radical SAM ThiC family zinc_ribbon_2 PF13240.6 gi|336255273|ref|YP_004598380.1| - 0.15 11.8 0.2 0.3 10.9 0.2 1.5 1 0 0 1 1 1 0 zinc-ribbon domain HTH_10 PF04967.12 gi|336255274|ref|YP_004598381.1| - 1.3e-15 56.9 0.6 2.4e-15 56.1 0.6 1.4 1 0 0 1 1 1 1 HTH DNA binding domain CPBP PF02517.16 gi|336255275|ref|YP_004598382.1| - 1.1e-10 41.8 12.4 2.6e-10 40.5 12.4 1.9 1 1 0 1 1 1 1 CPBP intramembrane metalloprotease PhzC-PhzF PF02567.16 gi|336255276|ref|YP_004598383.1| - 2.1e-67 227.5 0.0 2.4e-67 227.3 0.0 1.0 1 0 0 1 1 1 1 Phenazine biosynthesis-like protein Pro_racemase PF05544.11 gi|336255276|ref|YP_004598383.1| - 0.00049 19.3 0.0 0.00073 18.7 0.0 1.2 1 0 0 1 1 1 1 Proline racemase PPDK_N PF01326.19 gi|336255277|ref|YP_004598384.1| - 8.3e-108 360.5 0.0 1.3e-107 359.9 0.0 1.3 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.18 gi|336255277|ref|YP_004598384.1| - 3.7e-82 275.7 0.1 5.8e-82 275.1 0.1 1.2 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.23 gi|336255277|ref|YP_004598384.1| - 1.4e-27 95.2 2.7 3.6e-27 93.9 2.7 1.8 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain RdRP PF05183.12 gi|336255277|ref|YP_004598384.1| - 0.0025 16.5 0.0 0.032 12.9 0.0 2.1 2 0 0 2 2 2 1 RNA dependent RNA polymerase Epimerase_2 PF02350.19 gi|336255277|ref|YP_004598384.1| - 0.044 12.6 0.1 0.17 10.7 0.1 2.0 1 0 0 1 1 1 0 UDP-N-acetylglucosamine 2-epimerase UBM PF14377.6 gi|336255277|ref|YP_004598384.1| - 0.06 12.8 0.8 0.18 11.3 0.1 2.3 2 0 0 2 2 2 0 Ubiquitin binding region Glyoxalase PF00903.25 gi|336255278|ref|YP_004598385.1| - 4.5e-16 59.2 0.4 3.5e-08 33.7 0.0 2.4 2 0 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 gi|336255278|ref|YP_004598385.1| - 3.4e-08 34.2 6.6 0.00067 20.4 0.2 2.4 2 0 0 2 2 2 2 Glyoxalase-like domain Glyoxalase_3 PF13468.6 gi|336255278|ref|YP_004598385.1| - 0.0067 16.6 7.3 1.3 9.1 0.1 3.4 2 2 1 3 3 3 2 Glyoxalase-like domain Glyoxalase_4 PF13669.6 gi|336255278|ref|YP_004598385.1| - 0.014 15.7 0.1 6.3 7.1 0.0 3.3 2 2 0 2 2 2 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CppA_C PF14507.6 gi|336255278|ref|YP_004598385.1| - 0.091 13.5 0.0 0.25 12.1 0.0 1.8 2 1 0 2 2 2 0 CppA C-terminal Glyco_tranf_2_3 PF13641.6 gi|336255279|ref|YP_004598386.1| - 2.8e-22 79.7 1.1 4.2e-22 79.2 1.1 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.26 gi|336255279|ref|YP_004598386.1| - 1.7e-18 67.0 0.0 2.2e-18 66.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.6 gi|336255279|ref|YP_004598386.1| - 1.3e-14 54.6 0.8 2.7e-14 53.6 0.8 1.5 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_transf_21 PF13506.6 gi|336255279|ref|YP_004598386.1| - 5.1e-11 42.3 0.0 7.9e-11 41.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 21 Pyridoxal_deC PF00282.19 gi|336255280|ref|YP_004598387.1| - 1.1e-26 93.5 0.0 5.4e-26 91.2 0.0 1.9 1 1 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.19 gi|336255280|ref|YP_004598387.1| - 5.4e-12 45.4 0.0 6.9e-12 45.0 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V SHMT PF00464.19 gi|336255280|ref|YP_004598387.1| - 0.0047 15.6 0.0 0.0094 14.6 0.0 1.4 1 1 0 1 1 1 1 Serine hydroxymethyltransferase Beta_elim_lyase PF01212.21 gi|336255280|ref|YP_004598387.1| - 0.01 15.2 0.0 0.017 14.4 0.0 1.4 1 1 0 1 1 1 0 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|336255280|ref|YP_004598387.1| - 0.013 14.9 0.1 0.019 14.3 0.1 1.2 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family TIR_2 PF13676.6 gi|336255280|ref|YP_004598387.1| - 0.19 12.4 0.0 0.33 11.6 0.0 1.4 1 0 0 1 1 1 0 TIR domain SepSecS PF05889.13 gi|336255280|ref|YP_004598387.1| - 0.24 10.0 0.0 0.35 9.5 0.0 1.1 1 0 0 1 1 1 0 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS CoA_binding_3 PF13727.6 gi|336255281|ref|YP_004598388.1| - 2.1 8.3 6.4 1.3 9.0 5.1 1.4 1 1 0 1 1 1 0 CoA-binding domain tRNA-synt_1g PF09334.11 gi|336255282|ref|YP_004598389.1| - 1.6e-147 491.4 0.0 2e-147 491.1 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (M) tRNA_bind PF01588.20 gi|336255282|ref|YP_004598389.1| - 1.2e-20 73.4 0.1 2.1e-20 72.6 0.1 1.4 1 0 0 1 1 1 1 Putative tRNA binding domain tRNA-synt_1 PF00133.22 gi|336255282|ref|YP_004598389.1| - 1.3e-14 53.4 0.8 5.4e-08 31.6 0.2 3.0 2 1 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1e PF01406.19 gi|336255282|ref|YP_004598389.1| - 1e-09 38.2 0.0 9.5e-07 28.4 0.0 2.3 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain Anticodon_1 PF08264.13 gi|336255282|ref|YP_004598389.1| - 2.3e-07 30.9 0.0 4.2e-07 30.0 0.0 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1f PF01921.18 gi|336255282|ref|YP_004598389.1| - 0.00091 18.2 0.1 0.43 9.4 0.0 3.1 2 1 1 3 3 3 1 tRNA synthetases class I (K) Borrelia_P83 PF05262.11 gi|336255282|ref|YP_004598389.1| - 4.8 5.6 7.3 4.4 5.7 3.1 2.1 2 0 0 2 2 2 0 Borrelia P83/100 protein Pes-10 PF07149.11 gi|336255282|ref|YP_004598389.1| - 8.6 5.3 13.3 13 4.7 13.3 1.2 1 0 0 1 1 1 0 Pes-10 Beta-lactamase PF00144.24 gi|336255283|ref|YP_004598390.1| - 4.4e-64 216.8 0.9 7.8e-64 216.0 0.9 1.3 1 0 0 1 1 1 1 Beta-lactamase Beta-lactamase2 PF13354.6 gi|336255283|ref|YP_004598390.1| - 0.0039 16.8 0.0 0.98 9.0 0.0 2.3 2 0 0 2 2 2 2 Beta-lactamase enzyme family Chloroa_b-bind PF00504.21 gi|336255283|ref|YP_004598390.1| - 0.15 12.5 1.5 12 6.4 0.2 3.0 2 1 1 3 3 3 0 Chlorophyll A-B binding protein GYD PF08734.11 gi|336255284|ref|YP_004598391.1| - 1.9e-17 63.0 0.1 2.1e-17 62.9 0.1 1.0 1 0 0 1 1 1 1 GYD domain PK PF00224.21 gi|336255285|ref|YP_004598392.1| - 1.6e-117 392.3 3.6 2.1e-117 391.9 3.6 1.2 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.16 gi|336255285|ref|YP_004598392.1| - 3.4e-30 104.7 0.6 8.1e-30 103.4 0.6 1.7 1 0 0 1 1 1 1 Pyruvate kinase, alpha/beta domain PEP-utilizers PF00391.23 gi|336255285|ref|YP_004598392.1| - 5.6e-12 45.2 0.6 4.5e-11 42.3 0.1 2.8 2 0 0 2 2 2 1 PEP-utilising enzyme, mobile domain HpcH_HpaI PF03328.14 gi|336255285|ref|YP_004598392.1| - 0.00042 19.5 1.7 0.00042 19.5 1.7 2.2 1 1 1 2 2 2 1 HpcH/HpaI aldolase/citrate lyase family DUF4645 PF15488.6 gi|336255286|ref|YP_004598393.1| - 0.096 12.1 0.1 0.11 12.0 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4645) Diphthami_syn_2 PF01902.17 gi|336255287|ref|YP_004598394.1| - 2.1e-58 197.4 0.1 5e-58 196.2 0.1 1.5 1 1 0 1 1 1 1 Diphthamide synthase DUF373 PF04123.13 gi|336255288|ref|YP_004598395.1| - 1.8e-112 376.1 12.4 2.3e-112 375.8 12.4 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF373) Trypan_PARP PF05887.11 gi|336255288|ref|YP_004598395.1| - 0.0018 18.2 8.0 0.0018 18.2 8.0 1.9 2 0 0 2 2 2 1 Procyclic acidic repetitive protein (PARP) Peptidase_S49 PF01343.18 gi|336255289|ref|YP_004598396.1| - 2.2e-39 134.9 0.0 5.7e-39 133.5 0.0 1.6 2 0 0 2 2 2 1 Peptidase family S49 SDH_sah PF01972.16 gi|336255289|ref|YP_004598396.1| - 0.028 13.4 0.0 0.041 12.9 0.0 1.2 1 0 0 1 1 1 0 Serine dehydrogenase proteinase DUF3742 PF12553.8 gi|336255289|ref|YP_004598396.1| - 8 6.6 6.6 14 5.8 6.6 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3742) T3SSipB PF16535.5 gi|336255290|ref|YP_004598397.1| - 0.0068 16.9 12.2 0.0068 16.9 12.2 3.2 1 1 2 3 3 3 1 Type III cell invasion protein SipB DUF1771 PF08590.10 gi|336255290|ref|YP_004598397.1| - 0.96 9.9 38.0 0.33 11.4 6.3 5.1 3 2 2 5 5 5 0 Domain of unknown function (DUF1771) YtxH PF12732.7 gi|336255290|ref|YP_004598397.1| - 1.8 9.1 35.8 23 5.6 4.0 5.2 1 1 1 2 2 2 0 YtxH-like protein Laminin_II PF06009.12 gi|336255290|ref|YP_004598397.1| - 8.6 6.4 34.5 1.2 9.1 10.7 3.6 1 1 4 5 5 5 0 Laminin Domain II Tubulin PF00091.25 gi|336255291|ref|YP_004598398.1| - 1.3e-25 90.7 0.1 2.4e-25 89.9 0.1 1.4 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.6 gi|336255291|ref|YP_004598398.1| - 2.3e-07 30.3 0.4 1e-06 28.2 0.2 2.0 2 1 0 2 2 2 1 Tubulin like GFO_IDH_MocA PF01408.22 gi|336255292|ref|YP_004598399.1| - 2.2e-16 60.8 0.0 3.7e-16 60.0 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|336255292|ref|YP_004598399.1| - 1.1e-11 44.8 0.1 2.8e-11 43.5 0.1 1.7 1 1 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain ox_reductase_C PF08635.10 gi|336255292|ref|YP_004598399.1| - 0.13 12.0 0.0 0.33 10.6 0.0 1.7 1 1 0 1 1 1 0 Putative oxidoreductase C terminal domain Usp PF00582.26 gi|336255294|ref|YP_004598401.1| - 7.8e-30 104.2 1.8 7.8e-30 104.2 1.8 1.6 2 0 0 2 2 2 1 Universal stress protein family TPR_14 PF13428.6 gi|336255294|ref|YP_004598401.1| - 0.2 12.6 0.6 0.2 12.6 0.6 1.8 2 0 0 2 2 2 0 Tetratricopeptide repeat Zn-ribbon_8 PF09723.10 gi|336255295|ref|YP_004598402.1| - 3.8e-06 26.9 1.4 4.6e-06 26.6 1.4 1.1 1 0 0 1 1 1 1 Zinc ribbon domain HypA PF01155.19 gi|336255295|ref|YP_004598402.1| - 0.00075 19.5 0.1 0.00084 19.3 0.1 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-dskA_traR PF01258.17 gi|336255295|ref|YP_004598402.1| - 0.0029 17.5 2.0 0.016 15.1 0.1 2.1 2 0 0 2 2 2 1 Prokaryotic dksA/traR C4-type zinc finger DNA_ligase_ZBD PF03119.16 gi|336255295|ref|YP_004598402.1| - 0.012 15.6 4.7 0.5 10.4 0.3 2.2 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Prok-RING_4 PF14447.6 gi|336255295|ref|YP_004598402.1| - 0.018 14.9 1.7 0.77 9.7 1.9 2.1 1 1 1 2 2 2 0 Prokaryotic RING finger family 4 zf-LITAF-like PF10601.9 gi|336255295|ref|YP_004598402.1| - 0.022 15.0 0.2 2.9 8.2 0.1 2.1 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain zf-Di19 PF05605.12 gi|336255295|ref|YP_004598402.1| - 0.023 15.0 0.6 1.6 9.1 0.0 2.1 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding zinc_ribbon_9 PF14369.6 gi|336255295|ref|YP_004598402.1| - 0.042 14.1 0.9 0.071 13.4 0.9 1.4 1 0 0 1 1 1 0 zinc-ribbon Zn_Tnp_IS1595 PF12760.7 gi|336255295|ref|YP_004598402.1| - 0.051 13.6 3.5 3.5 7.7 0.4 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|336255295|ref|YP_004598402.1| - 0.064 12.7 1.6 2.5 7.6 0.4 2.2 2 0 0 2 2 2 0 zinc-ribbon domain YacG PF03884.14 gi|336255295|ref|YP_004598402.1| - 0.12 12.1 1.8 4.4 7.1 2.7 2.0 1 1 1 2 2 2 0 DNA gyrase inhibitor YacG TF_Zn_Ribbon PF08271.12 gi|336255295|ref|YP_004598402.1| - 0.12 11.9 2.3 0.44 10.1 2.4 1.8 1 1 0 1 1 1 0 TFIIB zinc-binding DiS_P_DiS PF06750.13 gi|336255295|ref|YP_004598402.1| - 0.15 12.2 0.4 2.8 8.1 0.1 2.0 1 1 1 2 2 2 0 Bacterial Peptidase A24 N-terminal domain zf-ACC PF17848.1 gi|336255295|ref|YP_004598402.1| - 0.15 12.1 0.7 6 7.0 0.0 2.3 2 1 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain zf-H2C2_2 PF13465.6 gi|336255295|ref|YP_004598402.1| - 0.26 11.8 1.5 10 6.7 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger double domain zf-Mss51 PF13824.6 gi|336255295|ref|YP_004598402.1| - 0.41 10.8 2.8 8.7 6.5 0.2 2.0 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 Lar_restr_allev PF14354.6 gi|336255295|ref|YP_004598402.1| - 0.71 10.3 4.1 3.2 8.2 0.8 2.1 1 1 1 2 2 2 0 Restriction alleviation protein Lar Glyoxalase PF00903.25 gi|336255296|ref|YP_004598403.1| - 2.6e-16 60.0 0.6 2.9e-16 59.8 0.6 1.0 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|336255296|ref|YP_004598403.1| - 1.7e-13 50.8 0.2 9.8e-09 35.5 0.1 1.8 1 1 1 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.7 gi|336255296|ref|YP_004598403.1| - 2.4e-07 30.7 0.0 3.3e-07 30.3 0.0 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_6 PF18029.1 gi|336255296|ref|YP_004598403.1| - 1.2e-06 29.2 0.2 1.6e-06 28.9 0.2 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_3 PF13468.6 gi|336255296|ref|YP_004598403.1| - 1.1e-05 25.6 0.9 0.04 14.0 0.3 2.1 2 0 0 2 2 2 2 Glyoxalase-like domain Usp PF00582.26 gi|336255297|ref|YP_004598404.1| - 5.4e-17 62.6 1.1 6.9e-17 62.3 1.1 1.2 1 0 0 1 1 1 1 Universal stress protein family adh_short_C2 PF13561.6 gi|336255298|ref|YP_004598405.1| - 1.1e-43 149.5 0.0 3.2e-43 148.0 0.0 1.6 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|336255298|ref|YP_004598405.1| - 1.2e-41 142.4 0.0 1.4e-41 142.1 0.0 1.0 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|336255298|ref|YP_004598405.1| - 3.2e-07 30.4 0.1 4.5e-07 29.9 0.1 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|336255298|ref|YP_004598405.1| - 0.016 14.6 0.3 0.057 12.9 0.1 1.9 1 1 0 2 2 2 0 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.15 gi|336255298|ref|YP_004598405.1| - 0.11 11.5 0.0 0.14 11.3 0.0 1.2 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein THF_DHG_CYH_C PF02882.19 gi|336255298|ref|YP_004598405.1| - 0.15 11.4 0.3 0.28 10.5 0.1 1.6 2 0 0 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain BAT PF15915.5 gi|336255299|ref|YP_004598406.1| - 1.9e-24 86.3 1.2 1.9e-24 86.3 1.2 1.4 2 0 0 2 2 2 1 GAF and HTH_10 associated domain HTH_10 PF04967.12 gi|336255299|ref|YP_004598406.1| - 4.2e-13 48.9 0.0 8.3e-13 47.9 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain HTH_3 PF01381.22 gi|336255299|ref|YP_004598406.1| - 0.016 15.3 0.0 0.028 14.5 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix Lig_C PF18330.1 gi|336255299|ref|YP_004598406.1| - 0.022 14.7 0.1 0.29 11.2 0.1 2.6 2 1 0 2 2 2 0 Ligase Pab1020 C-terminal region HTH_24 PF13412.6 gi|336255299|ref|YP_004598406.1| - 0.034 13.7 0.0 0.066 12.8 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding SatD PF16264.5 gi|336255299|ref|YP_004598406.1| - 0.05 13.2 0.1 0.12 12.0 0.0 1.6 2 0 0 2 2 2 0 SatD family (SatD) Birna_RdRp PF04197.12 gi|336255299|ref|YP_004598406.1| - 0.06 11.7 0.0 0.2 10.0 0.0 1.7 2 0 0 2 2 2 0 Birnavirus RNA dependent RNA polymerase (VP1) MarR_2 PF12802.7 gi|336255299|ref|YP_004598406.1| - 0.066 13.1 0.0 0.12 12.3 0.0 1.5 1 0 0 1 1 1 0 MarR family DAO PF01266.24 gi|336255301|ref|YP_004598408.1| - 1.8e-56 192.3 7.7 2.1e-56 192.0 7.7 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|336255301|ref|YP_004598408.1| - 2.2e-09 37.0 3.9 5.9e-09 35.6 3.9 1.6 1 1 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|336255301|ref|YP_004598408.1| - 2.3e-07 30.4 0.4 0.00072 18.9 0.1 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|336255301|ref|YP_004598408.1| - 2.3e-05 23.7 7.6 3.6e-05 23.1 7.6 1.3 1 0 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.7 gi|336255301|ref|YP_004598408.1| - 0.0002 20.9 12.3 0.0015 18.0 12.3 2.2 1 1 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|336255301|ref|YP_004598408.1| - 0.0024 18.1 2.1 0.008 16.4 1.8 2.0 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.12 gi|336255301|ref|YP_004598408.1| - 0.013 14.6 4.9 0.37 9.8 0.2 2.2 2 0 0 2 2 2 0 Lycopene cyclase protein 3HCDH_N PF02737.18 gi|336255301|ref|YP_004598408.1| - 0.016 15.1 0.8 0.025 14.5 0.1 1.7 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HI0933_like PF03486.14 gi|336255301|ref|YP_004598408.1| - 0.018 13.8 2.0 0.19 10.4 1.2 2.0 2 0 0 2 2 2 0 HI0933-like protein Thi4 PF01946.17 gi|336255301|ref|YP_004598408.1| - 0.021 14.1 0.4 0.021 14.1 0.4 2.2 2 1 0 2 2 2 0 Thi4 family ApbA PF02558.16 gi|336255301|ref|YP_004598408.1| - 0.079 12.6 0.2 0.13 11.9 0.2 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NAD_binding_7 PF13241.6 gi|336255301|ref|YP_004598408.1| - 0.096 13.1 0.0 0.35 11.3 0.0 1.9 1 0 0 1 1 1 0 Putative NAD(P)-binding Pyr_redox PF00070.27 gi|336255301|ref|YP_004598408.1| - 0.11 13.1 0.3 0.64 10.6 0.5 2.0 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|336255301|ref|YP_004598408.1| - 0.24 10.4 0.5 0.43 9.6 0.5 1.4 1 0 0 1 1 1 0 Glucose inhibited division protein A FAD_binding_3 PF01494.19 gi|336255302|ref|YP_004598409.1| - 9.9e-09 34.9 0.1 8.3e-08 31.9 0.1 2.2 1 1 0 1 1 1 1 FAD binding domain Lycopene_cycl PF05834.12 gi|336255302|ref|YP_004598409.1| - 3.4e-08 32.9 0.0 1.6e-07 30.7 0.0 1.8 2 0 0 2 2 2 1 Lycopene cyclase protein DAO PF01266.24 gi|336255302|ref|YP_004598409.1| - 4.2e-08 33.2 0.1 0.00035 20.2 0.0 2.4 1 1 1 2 2 2 2 FAD dependent oxidoreductase Trp_halogenase PF04820.14 gi|336255302|ref|YP_004598409.1| - 3.1e-07 29.6 0.0 0.005 15.7 0.0 2.6 3 0 0 3 3 3 2 Tryptophan halogenase Pyr_redox_2 PF07992.14 gi|336255302|ref|YP_004598409.1| - 7.6e-06 25.4 0.0 1.4e-05 24.5 0.0 1.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|336255302|ref|YP_004598409.1| - 2.4e-05 23.9 1.9 0.00035 20.0 1.9 2.3 1 1 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|336255302|ref|YP_004598409.1| - 8.2e-05 21.9 0.0 0.00026 20.2 0.0 1.8 1 1 1 2 2 2 1 FAD binding domain Thi4 PF01946.17 gi|336255302|ref|YP_004598409.1| - 0.00016 21.0 0.1 0.00083 18.7 0.0 2.0 2 0 0 2 2 2 1 Thi4 family GIDA PF01134.22 gi|336255302|ref|YP_004598409.1| - 0.00044 19.5 0.0 0.25 10.4 0.0 2.3 2 0 0 2 2 2 2 Glucose inhibited division protein A HI0933_like PF03486.14 gi|336255302|ref|YP_004598409.1| - 0.00056 18.7 0.0 0.0021 16.9 0.0 1.8 2 0 0 2 2 2 1 HI0933-like protein NAD_binding_8 PF13450.6 gi|336255302|ref|YP_004598409.1| - 0.0013 18.9 0.0 0.0041 17.3 0.0 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.6 gi|336255302|ref|YP_004598409.1| - 0.02 14.2 0.0 0.029 13.6 0.0 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.18 gi|336255302|ref|YP_004598409.1| - 0.16 12.2 0.0 0.33 11.2 0.0 1.5 1 0 0 1 1 1 0 TrkA-N domain XdhC_C PF13478.6 gi|336255302|ref|YP_004598409.1| - 0.18 12.3 0.2 0.8 10.2 0.0 2.1 3 0 0 3 3 2 0 XdhC Rossmann domain HTH_24 PF13412.6 gi|336255303|ref|YP_004598410.1| - 3.8e-11 42.4 0.0 7.1e-11 41.5 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|336255303|ref|YP_004598410.1| - 1.4e-10 40.9 1.3 6.2e-10 38.8 0.2 2.5 3 0 0 3 3 3 1 MarR family MarR PF01047.22 gi|336255303|ref|YP_004598410.1| - 2.7e-08 33.6 0.0 6.5e-08 32.4 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|336255303|ref|YP_004598410.1| - 1.9e-06 27.7 0.1 4.3e-06 26.6 0.1 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_27 PF13463.6 gi|336255303|ref|YP_004598410.1| - 4.6e-06 27.0 0.1 1.4e-05 25.5 0.1 1.8 2 0 0 2 2 1 1 Winged helix DNA-binding domain HTH_IclR PF09339.10 gi|336255303|ref|YP_004598410.1| - 1.6e-05 24.6 0.0 3.3e-05 23.6 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|336255303|ref|YP_004598410.1| - 2.5e-05 24.1 0.0 4.1e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|336255303|ref|YP_004598410.1| - 3.2e-05 23.8 0.0 5.3e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_45 PF14947.6 gi|336255303|ref|YP_004598410.1| - 9.2e-05 22.4 0.0 0.00014 21.7 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_20 PF12840.7 gi|336255303|ref|YP_004598410.1| - 0.00012 22.1 0.1 0.00034 20.6 0.1 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain Mnd1 PF03962.15 gi|336255303|ref|YP_004598410.1| - 0.00014 22.0 0.1 0.00049 20.3 0.0 1.9 2 0 0 2 2 1 1 Mnd1 HTH domain TrmB PF01978.19 gi|336255303|ref|YP_004598410.1| - 0.00015 21.6 0.1 0.00028 20.7 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.19 gi|336255303|ref|YP_004598410.1| - 0.00023 21.3 0.1 0.00061 19.9 0.1 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_13 PF11972.8 gi|336255303|ref|YP_004598410.1| - 0.00025 21.0 0.1 0.00058 19.9 0.1 1.6 1 0 0 1 1 1 1 HTH DNA binding domain Rrf2 PF02082.20 gi|336255303|ref|YP_004598410.1| - 0.00097 19.4 0.0 0.0032 17.8 0.0 1.8 2 0 0 2 2 1 1 Transcriptional regulator GntR PF00392.21 gi|336255303|ref|YP_004598410.1| - 0.0022 17.6 0.1 0.0067 16.0 0.2 1.8 2 0 0 2 2 1 1 Bacterial regulatory proteins, gntR family HemN_C PF06969.16 gi|336255303|ref|YP_004598410.1| - 0.0026 17.8 0.0 0.011 15.8 0.0 1.9 2 0 0 2 2 2 1 HemN C-terminal domain SMC_ScpB PF04079.16 gi|336255303|ref|YP_004598410.1| - 0.0046 16.6 0.2 0.0089 15.7 0.2 1.4 1 0 0 1 1 1 1 Segregation and condensation complex subunit ScpB HTH_12 PF08461.10 gi|336255303|ref|YP_004598410.1| - 0.0051 16.7 0.0 0.012 15.6 0.0 1.6 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_23 PF13384.6 gi|336255303|ref|YP_004598410.1| - 0.0085 15.9 0.1 0.02 14.7 0.1 1.6 1 0 0 1 1 1 1 Homeodomain-like domain DUF4423 PF14394.6 gi|336255303|ref|YP_004598410.1| - 0.018 14.8 0.0 0.027 14.2 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_1 PF00126.27 gi|336255303|ref|YP_004598410.1| - 0.021 14.7 0.1 0.058 13.4 0.1 1.8 1 1 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family TetR_C_7 PF14246.6 gi|336255303|ref|YP_004598410.1| - 0.027 14.5 0.0 0.06 13.4 0.0 1.6 1 0 0 1 1 1 0 AefR-like transcriptional repressor, C-terminal domain AbiEi_4 PF13338.6 gi|336255303|ref|YP_004598410.1| - 0.031 14.4 0.1 0.09 12.9 0.1 1.9 1 0 0 1 1 1 0 Transcriptional regulator, AbiEi antitoxin DUF4364 PF14277.6 gi|336255303|ref|YP_004598410.1| - 0.05 13.3 0.0 0.072 12.8 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) NMD3 PF04981.13 gi|336255303|ref|YP_004598410.1| - 0.078 12.4 0.1 0.15 11.5 0.0 1.5 2 0 0 2 2 2 0 NMD3 family LacI PF00356.21 gi|336255303|ref|YP_004598410.1| - 0.078 12.8 0.0 0.42 10.4 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory proteins, lacI family HTH_10 PF04967.12 gi|336255303|ref|YP_004598410.1| - 0.081 12.7 0.0 0.16 11.8 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain HTH_28 PF13518.6 gi|336255303|ref|YP_004598410.1| - 0.082 13.1 0.1 0.19 11.9 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|336255303|ref|YP_004598410.1| - 0.087 12.7 0.1 0.2 11.5 0.1 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Rio2_N PF09202.11 gi|336255303|ref|YP_004598410.1| - 0.12 12.6 0.0 0.21 11.8 0.0 1.3 1 0 0 1 1 1 0 Rio2, N-terminal Mrr_N PF14338.6 gi|336255303|ref|YP_004598410.1| - 0.13 12.4 0.0 0.44 10.7 0.0 1.7 1 1 1 2 2 2 0 Mrr N-terminal domain LexA_DNA_bind PF01726.16 gi|336255303|ref|YP_004598410.1| - 0.15 11.9 0.0 0.41 10.5 0.0 1.7 2 0 0 2 2 2 0 LexA DNA binding domain HTH_3 PF01381.22 gi|336255303|ref|YP_004598410.1| - 0.16 12.1 0.1 0.31 11.1 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix PAC2 PF09754.9 gi|336255304|ref|YP_004598411.1| - 3.4e-52 177.6 0.2 3.9e-52 177.3 0.2 1.0 1 0 0 1 1 1 1 PAC2 family Nop10p PF04135.12 gi|336255305|ref|YP_004598412.1| - 1.2e-23 82.9 0.9 1.3e-23 82.7 0.9 1.0 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family LisH_2 PF16045.5 gi|336255305|ref|YP_004598412.1| - 0.13 11.4 0.0 0.2 10.7 0.0 1.2 1 0 0 1 1 1 0 LisH EIF_2_alpha PF07541.12 gi|336255306|ref|YP_004598413.1| - 3.4e-23 81.9 0.0 5.7e-23 81.2 0.0 1.4 1 0 0 1 1 1 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.23 gi|336255306|ref|YP_004598413.1| - 4.5e-11 42.9 1.3 9e-11 42.0 1.3 1.5 1 0 0 1 1 1 1 S1 RNA binding domain DUF2073 PF09846.9 gi|336255306|ref|YP_004598413.1| - 0.011 15.6 0.0 0.024 14.5 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2073) Ribosomal_S27e PF01667.17 gi|336255307|ref|YP_004598414.1| - 6.5e-22 77.0 0.7 6.9e-22 76.9 0.7 1.0 1 0 0 1 1 1 1 Ribosomal protein S27 Zn-ribbon_8 PF09723.10 gi|336255307|ref|YP_004598414.1| - 8.5e-05 22.6 1.1 0.00012 22.2 1.1 1.2 1 0 0 1 1 1 1 Zinc ribbon domain HypA PF01155.19 gi|336255307|ref|YP_004598414.1| - 0.025 14.6 0.9 0.03 14.4 0.9 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TF_Zn_Ribbon PF08271.12 gi|336255307|ref|YP_004598414.1| - 0.027 14.0 1.6 0.041 13.4 1.6 1.3 1 0 0 1 1 1 0 TFIIB zinc-binding zf-C2H2_3 PF13878.6 gi|336255307|ref|YP_004598414.1| - 0.055 13.3 1.0 3.3 7.6 0.1 2.1 2 0 0 2 2 2 0 zinc-finger of acetyl-transferase ESCO eIF-5_eIF-2B PF01873.17 gi|336255307|ref|YP_004598414.1| - 0.1 12.5 1.9 0.13 12.1 1.9 1.1 1 0 0 1 1 1 0 Domain found in IF2B/IF5 zinc_ribbon_6 PF14599.6 gi|336255307|ref|YP_004598414.1| - 0.12 12.4 1.9 0.22 11.6 1.9 1.5 1 1 0 1 1 1 0 Zinc-ribbon zinc_ribbon_4 PF13717.6 gi|336255307|ref|YP_004598414.1| - 0.33 10.9 3.8 13 5.9 0.3 2.3 1 1 1 2 2 2 0 zinc-ribbon domain Ribosomal_L44 PF00935.19 gi|336255308|ref|YP_004598415.1| - 1.3e-26 92.9 2.5 1.6e-26 92.6 2.5 1.1 1 0 0 1 1 1 1 Ribosomal protein L44 zf-ribbon_3 PF13248.6 gi|336255308|ref|YP_004598415.1| - 1.5e-05 24.2 0.6 0.019 14.3 0.0 2.2 2 0 0 2 2 2 2 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|336255308|ref|YP_004598415.1| - 0.0098 16.0 1.8 2.4 8.3 0.2 2.4 2 0 0 2 2 2 2 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|336255308|ref|YP_004598415.1| - 0.015 15.2 2.1 3.1 7.9 0.2 2.3 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zinc_ribbon_10 PF10058.9 gi|336255308|ref|YP_004598415.1| - 0.021 14.5 1.5 0.78 9.5 0.0 2.2 2 0 0 2 2 2 0 Predicted integral membrane zinc-ribbon metal-binding protein Zn_ribbon_SprT PF17283.2 gi|336255308|ref|YP_004598415.1| - 0.022 14.6 5.7 0.64 10.0 0.6 2.4 2 0 0 2 2 2 0 SprT-like zinc ribbon domain Terminase_GpA PF05876.12 gi|336255308|ref|YP_004598415.1| - 0.029 12.9 1.6 0.042 12.4 1.6 1.3 1 1 0 1 1 1 0 Phage terminase large subunit (GpA) zinc_ribbon_2 PF13240.6 gi|336255308|ref|YP_004598415.1| - 0.064 13.0 4.1 2.3 8.1 0.4 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-LITAF-like PF10601.9 gi|336255308|ref|YP_004598415.1| - 0.094 13.0 2.4 1.1 9.6 0.1 2.1 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain zinc_ribbon_4 PF13717.6 gi|336255308|ref|YP_004598415.1| - 0.15 12.0 1.9 12 5.9 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.7 gi|336255308|ref|YP_004598415.1| - 0.47 10.5 4.8 1.6 8.9 4.8 1.7 1 1 0 1 1 1 0 Double zinc ribbon zf-Mss51 PF13824.6 gi|336255308|ref|YP_004598415.1| - 0.49 10.5 7.6 0.87 9.7 7.6 1.5 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Rubredoxin_2 PF18073.1 gi|336255308|ref|YP_004598415.1| - 0.87 9.4 7.0 0.68 9.7 0.6 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain GtrA PF04138.14 gi|336255310|ref|YP_004598417.1| - 3.7e-22 78.8 10.1 4.3e-22 78.6 10.1 1.0 1 0 0 1 1 1 1 GtrA-like protein SPT_ssu-like PF11779.8 gi|336255312|ref|YP_004598419.1| - 0.12 12.0 1.9 1.9 8.2 0.3 2.3 2 0 0 2 2 2 0 Small subunit of serine palmitoyltransferase-like RSRP PF17069.5 gi|336255312|ref|YP_004598419.1| - 0.63 9.6 13.9 0.86 9.1 13.9 1.1 1 0 0 1 1 1 0 Arginine/Serine-Rich protein 1 AF-4 PF05110.13 gi|336255312|ref|YP_004598419.1| - 1.5 6.8 7.2 1.7 6.6 7.2 1.0 1 0 0 1 1 1 0 AF-4 proto-oncoprotein DUF2721 PF11026.8 gi|336255312|ref|YP_004598419.1| - 5.3 6.9 7.6 0.19 11.7 1.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2721) ABC_tran PF00005.27 gi|336255313|ref|YP_004598420.1| - 3.4e-33 115.0 0.0 5.8e-33 114.3 0.0 1.4 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|336255313|ref|YP_004598420.1| - 4.9e-15 55.8 0.5 9.7e-15 54.8 0.5 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|336255313|ref|YP_004598420.1| - 4.7e-06 26.6 0.4 0.0052 16.6 0.2 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|336255313|ref|YP_004598420.1| - 2e-05 24.9 0.1 0.00032 21.0 0.0 2.5 2 1 0 2 2 2 1 AAA domain SMC_N PF02463.19 gi|336255313|ref|YP_004598420.1| - 0.0016 18.0 0.0 0.0075 15.7 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|336255313|ref|YP_004598420.1| - 0.0047 17.3 0.7 0.011 16.2 0.4 1.9 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|336255313|ref|YP_004598420.1| - 0.018 15.5 0.0 0.081 13.4 0.0 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.6 gi|336255313|ref|YP_004598420.1| - 0.019 14.5 1.0 1.1 8.8 1.0 2.6 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|336255313|ref|YP_004598420.1| - 0.032 14.2 0.9 0.78 9.7 0.1 2.8 3 1 0 3 3 3 0 AAA domain (dynein-related subfamily) ATP-synt_ab PF00006.25 gi|336255313|ref|YP_004598420.1| - 0.036 13.7 0.0 0.036 13.7 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_13 PF13166.6 gi|336255313|ref|YP_004598420.1| - 0.082 11.5 0.1 2.4 6.7 0.1 2.1 2 0 0 2 2 2 0 AAA domain PduV-EutP PF10662.9 gi|336255313|ref|YP_004598420.1| - 0.17 11.7 0.3 0.62 9.8 0.1 1.9 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation RsgA_GTPase PF03193.16 gi|336255313|ref|YP_004598420.1| - 0.19 11.6 0.0 0.33 10.8 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_29 PF13555.6 gi|336255313|ref|YP_004598420.1| - 0.23 11.3 0.1 0.48 10.2 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain ABC_tran PF00005.27 gi|336255314|ref|YP_004598421.1| - 5.9e-28 98.1 0.0 2.2e-15 57.4 0.0 2.3 2 0 0 2 2 2 2 ABC transporter oligo_HPY PF08352.12 gi|336255314|ref|YP_004598421.1| - 2.1e-19 69.8 0.1 4.8e-19 68.6 0.1 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|336255314|ref|YP_004598421.1| - 3e-06 27.3 0.0 3.1e-05 23.9 0.0 2.0 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|336255314|ref|YP_004598421.1| - 0.0018 17.7 0.1 0.3 10.5 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|336255314|ref|YP_004598421.1| - 0.022 15.1 0.0 0.057 13.8 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain AAA_22 PF13401.6 gi|336255314|ref|YP_004598421.1| - 0.027 14.8 0.1 0.61 10.4 0.0 2.5 2 1 0 2 2 2 0 AAA domain AAA_29 PF13555.6 gi|336255314|ref|YP_004598421.1| - 0.06 13.1 0.0 0.13 12.0 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF87 PF01935.17 gi|336255314|ref|YP_004598421.1| - 0.1 12.7 0.0 0.19 11.8 0.0 1.4 1 0 0 1 1 1 0 Helicase HerA, central domain Sigma54_activat PF00158.26 gi|336255314|ref|YP_004598421.1| - 0.18 11.5 0.1 0.66 9.7 0.0 1.8 2 0 0 2 2 2 0 Sigma-54 interaction domain BPD_transp_1 PF00528.22 gi|336255315|ref|YP_004598422.1| - 4e-22 78.8 6.5 4e-22 78.8 6.5 3.4 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|336255315|ref|YP_004598422.1| - 0.059 13.3 0.0 0.059 13.3 0.0 3.9 4 0 0 4 4 4 0 N-terminal TM domain of oligopeptide transport permease C Abhydrolase_9_N PF15420.6 gi|336255315|ref|YP_004598422.1| - 5.3 7.0 23.6 0.63 10.0 1.2 4.3 4 1 1 5 5 5 0 Alpha/beta-hydrolase family N-terminus BPD_transp_1 PF00528.22 gi|336255316|ref|YP_004598423.1| - 6.9e-35 120.5 12.6 6.9e-35 120.5 12.6 2.1 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.22 gi|336255317|ref|YP_004598424.1| - 5e-71 239.7 0.6 7e-71 239.2 0.6 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle Pribosyltran PF00156.27 gi|336255318|ref|YP_004598425.1| - 3.1e-17 62.6 3.6 4.4e-17 62.1 3.6 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|336255318|ref|YP_004598425.1| - 0.00014 21.4 0.3 0.00016 21.2 0.3 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Reticulon PF02453.17 gi|336255319|ref|YP_004598426.1| - 0.015 15.3 0.2 0.021 14.8 0.2 1.2 1 0 0 1 1 1 0 Reticulon MHYT PF03707.16 gi|336255319|ref|YP_004598426.1| - 2.3 8.5 5.5 3.1 8.0 0.4 2.2 1 1 1 2 2 2 0 Bacterial signalling protein N terminal repeat DFP PF04127.15 gi|336255320|ref|YP_004598427.1| - 1.5e-51 174.9 2.3 2.4e-50 171.0 0.6 2.2 2 0 0 2 2 2 1 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.19 gi|336255320|ref|YP_004598427.1| - 3.4e-35 121.1 0.2 4.9e-35 120.6 0.2 1.3 1 0 0 1 1 1 1 Flavoprotein PALP PF00291.25 gi|336255320|ref|YP_004598427.1| - 0.026 13.9 7.6 0.095 12.1 2.7 2.5 1 1 1 2 2 2 0 Pyridoxal-phosphate dependent enzyme 3HCDH_N PF02737.18 gi|336255320|ref|YP_004598427.1| - 0.063 13.1 0.2 0.15 12.0 0.2 1.6 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain adh_short_C2 PF13561.6 gi|336255320|ref|YP_004598427.1| - 0.34 10.4 6.3 0.67 9.5 1.7 3.1 3 1 0 3 3 3 0 Enoyl-(Acyl carrier protein) reductase Acetyltransf_1 PF00583.25 gi|336255321|ref|YP_004598428.1| - 4.3e-18 65.7 0.1 5.3e-18 65.4 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|336255321|ref|YP_004598428.1| - 5.5e-12 45.7 0.0 2e-11 43.9 0.0 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|336255321|ref|YP_004598428.1| - 9.3e-11 42.0 0.0 1.4e-10 41.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|336255321|ref|YP_004598428.1| - 8.3e-07 28.9 0.0 1.2e-06 28.4 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.7 gi|336255321|ref|YP_004598428.1| - 0.0002 22.0 0.0 0.00026 21.7 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|336255321|ref|YP_004598428.1| - 0.00055 20.0 0.0 0.0011 19.0 0.0 1.5 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_8 PF13523.6 gi|336255321|ref|YP_004598428.1| - 0.00073 19.2 0.0 0.0014 18.4 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FGase PF05013.12 gi|336255321|ref|YP_004598428.1| - 0.0027 17.9 0.1 0.0038 17.5 0.1 1.4 1 1 0 1 1 1 1 N-formylglutamate amidohydrolase Acetyltransf_9 PF13527.7 gi|336255321|ref|YP_004598428.1| - 0.016 15.3 0.0 0.041 14.0 0.0 1.6 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|336255321|ref|YP_004598428.1| - 0.02 15.0 0.0 0.029 14.5 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_13 PF13880.6 gi|336255321|ref|YP_004598428.1| - 0.19 11.7 0.0 0.37 10.8 0.0 1.4 1 0 0 1 1 1 0 ESCO1/2 acetyl-transferase N6_N4_Mtase PF01555.18 gi|336255322|ref|YP_004598429.1| - 2.4e-18 66.7 0.0 3.8e-09 36.6 0.0 2.1 2 0 0 2 2 2 2 DNA methylase Met_10 PF02475.16 gi|336255322|ref|YP_004598429.1| - 0.0045 16.8 0.0 0.0092 15.7 0.0 1.4 1 0 0 1 1 1 1 Met-10+ like-protein Pyr_redox_2 PF07992.14 gi|336255323|ref|YP_004598430.1| - 1.2e-12 47.6 3.6 5.9e-06 25.7 0.1 2.1 1 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|336255323|ref|YP_004598430.1| - 2e-05 23.9 9.6 0.00031 20.0 4.2 2.2 1 1 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.7 gi|336255323|ref|YP_004598430.1| - 0.00016 21.2 5.2 0.00016 21.1 3.8 1.7 2 0 0 2 2 2 1 FAD dependent oxidoreductase DAO PF01266.24 gi|336255323|ref|YP_004598430.1| - 0.00019 21.2 10.4 0.087 12.4 4.4 2.6 1 1 1 2 2 2 2 FAD dependent oxidoreductase GIDA PF01134.22 gi|336255323|ref|YP_004598430.1| - 0.00031 19.9 0.4 0.00046 19.4 0.4 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A FAD_binding_3 PF01494.19 gi|336255323|ref|YP_004598430.1| - 0.002 17.4 0.8 0.0034 16.7 0.8 1.4 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.6 gi|336255323|ref|YP_004598430.1| - 0.0042 17.3 1.3 0.0065 16.7 0.3 1.8 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|336255323|ref|YP_004598430.1| - 0.0067 15.2 0.1 0.044 12.5 0.6 1.8 2 0 0 2 2 2 1 HI0933-like protein Lycopene_cycl PF05834.12 gi|336255323|ref|YP_004598430.1| - 0.012 14.7 0.8 0.088 11.8 0.3 2.0 2 0 0 2 2 2 0 Lycopene cyclase protein Pyr_redox_3 PF13738.6 gi|336255323|ref|YP_004598430.1| - 0.023 13.9 0.2 0.15 11.2 0.3 2.0 1 1 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|336255323|ref|YP_004598430.1| - 0.051 12.9 0.1 0.083 12.2 0.1 1.2 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Peptidase_M48 PF01435.18 gi|336255324|ref|YP_004598431.1| - 1.6e-19 70.4 0.0 2.7e-19 69.7 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M48 DUF2268 PF10026.9 gi|336255324|ref|YP_004598431.1| - 0.12 11.9 0.0 0.19 11.3 0.0 1.2 1 0 0 1 1 1 0 Predicted Zn-dependent protease (DUF2268) Peptidase_M43 PF05572.13 gi|336255324|ref|YP_004598431.1| - 0.19 11.6 0.0 0.32 10.9 0.0 1.3 1 0 0 1 1 1 0 Pregnancy-associated plasma protein-A DUF805 PF05656.14 gi|336255324|ref|YP_004598431.1| - 3.8 8.0 5.6 9.8 6.6 5.6 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF805) Polyketide_cyc2 PF10604.9 gi|336255325|ref|YP_004598432.1| - 1.9e-09 37.9 0.6 2.6e-09 37.5 0.6 1.2 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.20 gi|336255325|ref|YP_004598432.1| - 1.9e-05 24.8 0.1 3.7e-05 23.9 0.1 1.5 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport TrkA_N PF02254.18 gi|336255326|ref|YP_004598433.1| - 2.9e-50 169.4 10.1 3.3e-26 91.8 2.3 2.8 3 0 0 3 3 3 2 TrkA-N domain TrkA_C PF02080.21 gi|336255326|ref|YP_004598433.1| - 1.3e-26 92.2 12.8 1.6e-14 53.4 0.2 3.6 3 0 0 3 3 3 2 TrkA-C domain Shikimate_DH PF01488.20 gi|336255326|ref|YP_004598433.1| - 1.2e-11 44.8 0.6 9.5e-06 25.7 0.4 2.5 2 0 0 2 2 2 2 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.6 gi|336255326|ref|YP_004598433.1| - 1.2e-10 41.7 3.7 4.1e-05 24.0 1.3 2.8 3 0 0 3 3 2 2 Putative NAD(P)-binding NAD_binding_10 PF13460.6 gi|336255326|ref|YP_004598433.1| - 5.4e-10 39.4 6.0 0.00014 21.9 1.0 2.7 3 0 0 3 3 3 2 NAD(P)H-binding Sacchrp_dh_NADP PF03435.18 gi|336255326|ref|YP_004598433.1| - 8.3e-08 32.6 2.7 0.00018 21.8 0.9 2.8 2 1 1 3 3 3 2 Saccharopine dehydrogenase NADP binding domain 3HCDH_N PF02737.18 gi|336255326|ref|YP_004598433.1| - 5.6e-06 26.3 0.1 0.0042 17.0 0.2 2.4 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_binding_3 PF01494.19 gi|336255326|ref|YP_004598433.1| - 7.5e-06 25.4 0.4 0.0025 17.1 0.2 3.0 3 0 0 3 3 3 1 FAD binding domain F420_oxidored PF03807.17 gi|336255326|ref|YP_004598433.1| - 1.1e-05 25.9 1.6 0.02 15.5 0.2 3.1 3 1 0 3 3 2 2 NADP oxidoreductase coenzyme F420-dependent Castor_Poll_mid PF06241.12 gi|336255326|ref|YP_004598433.1| - 1.2e-05 25.2 0.0 0.0022 18.0 0.0 2.8 2 0 0 2 2 2 1 Castor and Pollux, part of voltage-gated ion channel adh_short PF00106.25 gi|336255326|ref|YP_004598433.1| - 0.0002 20.9 0.4 0.093 12.2 0.0 2.5 2 0 0 2 2 2 2 short chain dehydrogenase DAO PF01266.24 gi|336255326|ref|YP_004598433.1| - 0.00023 20.8 5.3 0.0019 17.8 1.7 2.7 2 1 0 2 2 2 1 FAD dependent oxidoreductase ADH_zinc_N PF00107.26 gi|336255326|ref|YP_004598433.1| - 0.00028 20.8 1.3 0.0037 17.2 0.0 3.1 3 1 0 3 3 2 1 Zinc-binding dehydrogenase Pyr_redox_2 PF07992.14 gi|336255326|ref|YP_004598433.1| - 0.00059 19.2 5.6 0.0065 15.7 5.6 2.4 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.14 gi|336255326|ref|YP_004598433.1| - 0.001 18.7 0.2 0.0094 15.5 0.3 2.5 3 0 0 3 3 3 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_2 PF03446.15 gi|336255326|ref|YP_004598433.1| - 0.0014 18.9 0.1 0.16 12.1 0.1 2.5 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.16 gi|336255326|ref|YP_004598433.1| - 0.0033 17.1 0.2 0.012 15.3 0.1 2.0 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.23 gi|336255326|ref|YP_004598433.1| - 0.006 16.6 0.0 0.34 10.9 0.0 2.5 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ThiF PF00899.21 gi|336255326|ref|YP_004598433.1| - 0.051 12.9 1.6 0.28 10.5 0.3 2.5 2 1 1 3 3 3 0 ThiF family 2-Hacid_dh_C PF02826.19 gi|336255326|ref|YP_004598433.1| - 0.051 12.9 0.1 5.1 6.4 0.1 2.5 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|336255326|ref|YP_004598433.1| - 0.086 13.7 1.7 13 6.6 0.2 3.4 2 1 1 3 3 3 0 Oxidoreductase family, NAD-binding Rossmann fold HAS-barrel PF09378.10 gi|336255326|ref|YP_004598433.1| - 0.11 12.6 1.7 1.7 8.9 0.1 2.9 2 0 0 2 2 2 0 HAS barrel domain YflT PF11181.8 gi|336255326|ref|YP_004598433.1| - 0.22 12.0 2.6 2.4 8.7 0.1 3.1 3 1 1 4 4 3 0 Heat induced stress protein YflT AdoHcyase_NAD PF00670.21 gi|336255326|ref|YP_004598433.1| - 0.36 10.9 2.4 2.4 8.2 1.7 2.7 3 0 0 3 3 3 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Pyr_redox PF00070.27 gi|336255326|ref|YP_004598433.1| - 0.4 11.3 7.8 5.1 7.7 0.6 3.6 4 0 0 4 4 3 0 Pyridine nucleotide-disulphide oxidoreductase Peptidase_M42 PF05343.14 gi|336255327|ref|YP_004598434.1| - 1.9e-89 299.5 0.3 2.3e-89 299.3 0.3 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M28 PF04389.17 gi|336255327|ref|YP_004598434.1| - 8.2e-10 38.7 0.4 2.8e-06 27.2 0.1 2.2 2 0 0 2 2 2 2 Peptidase family M28 Peptidase_M20 PF01546.28 gi|336255327|ref|YP_004598434.1| - 9.4e-10 38.5 0.5 1.8e-09 37.6 0.5 1.5 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M18 PF02127.15 gi|336255327|ref|YP_004598434.1| - 0.00056 18.8 0.0 0.66 8.7 0.0 2.1 1 1 0 2 2 2 2 Aminopeptidase I zinc metalloprotease (M18) Thiolase_N PF00108.23 gi|336255328|ref|YP_004598435.1| - 1.2e-26 93.6 0.4 1.3e-22 80.4 0.1 2.3 2 0 0 2 2 2 2 Thiolase, N-terminal domain ketoacyl-synt PF00109.26 gi|336255328|ref|YP_004598435.1| - 3.2e-10 40.0 8.8 3.2e-10 40.0 1.9 3.1 4 1 1 5 5 5 1 Beta-ketoacyl synthase, N-terminal domain Thiolase_C PF02803.18 gi|336255328|ref|YP_004598435.1| - 2.3e-09 36.9 0.4 5.7e-09 35.7 0.4 1.7 1 0 0 1 1 1 1 Thiolase, C-terminal domain ACP_syn_III PF08545.10 gi|336255328|ref|YP_004598435.1| - 0.003 17.4 0.7 1.2 9.0 0.2 2.7 2 0 0 2 2 2 2 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Ketoacyl-synt_C PF02801.22 gi|336255328|ref|YP_004598435.1| - 0.16 12.0 5.5 0.78 9.8 1.6 3.4 3 1 0 3 3 3 0 Beta-ketoacyl synthase, C-terminal domain OB_aCoA_assoc PF01796.17 gi|336255329|ref|YP_004598436.1| - 2.2e-12 46.8 1.4 3.2e-12 46.3 1.4 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|336255329|ref|YP_004598436.1| - 5.7e-06 26.1 0.8 9.6e-06 25.4 0.8 1.4 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) TF_Zn_Ribbon PF08271.12 gi|336255329|ref|YP_004598436.1| - 0.036 13.6 0.2 0.069 12.7 0.2 1.4 1 0 0 1 1 1 0 TFIIB zinc-binding MafB19-deam PF14437.6 gi|336255330|ref|YP_004598437.1| - 5.2e-16 58.7 0.0 6.1e-16 58.4 0.0 1.1 1 0 0 1 1 1 1 MafB19-like deaminase dCMP_cyt_deam_1 PF00383.23 gi|336255330|ref|YP_004598437.1| - 2.3e-15 56.3 0.0 2.9e-15 56.0 0.0 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region SNAD4 PF18750.1 gi|336255330|ref|YP_004598437.1| - 1.8e-05 24.8 0.0 2.7e-05 24.3 0.0 1.2 1 0 0 1 1 1 1 Secreted Novel AID/APOBEC-like Deaminase 4 NAD2 PF18782.1 gi|336255330|ref|YP_004598437.1| - 0.00032 20.8 0.0 0.00046 20.3 0.0 1.2 1 0 0 1 1 1 1 Novel AID APOBEC clade 2 NAD1 PF18778.1 gi|336255330|ref|YP_004598437.1| - 0.00075 19.6 0.0 0.0011 19.2 0.0 1.1 1 0 0 1 1 1 1 Novel AID APOBEC clade 1 APOBEC2 PF18772.1 gi|336255330|ref|YP_004598437.1| - 0.0014 18.7 0.0 0.0021 18.1 0.0 1.2 1 0 0 1 1 1 1 APOBEC2 APOBEC_N PF08210.11 gi|336255330|ref|YP_004598437.1| - 0.01 15.7 0.0 0.011 15.6 0.0 1.2 1 0 0 1 1 1 0 APOBEC-like N-terminal domain OTT_1508_deam PF14441.6 gi|336255330|ref|YP_004598437.1| - 0.018 15.0 0.0 0.033 14.2 0.0 1.5 1 0 0 1 1 1 0 OTT_1508-like deaminase Bd3614-deam PF14439.6 gi|336255330|ref|YP_004598437.1| - 0.03 14.4 0.1 0.046 13.8 0.1 1.4 1 0 0 1 1 1 0 Bd3614-like deaminase RDD PF06271.12 gi|336255332|ref|YP_004598439.1| - 2.3e-20 73.2 7.1 2.9e-20 72.9 7.1 1.1 1 0 0 1 1 1 1 RDD family DUF418 PF04235.12 gi|336255332|ref|YP_004598439.1| - 0.44 10.5 5.7 0.34 10.8 4.3 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF418) Peptidase_M48_N PF16491.5 gi|336255332|ref|YP_004598439.1| - 2.5 7.9 6.4 1.7 8.5 2.9 1.9 2 0 0 2 2 2 0 CAAX prenyl protease N-terminal, five membrane helices NUDIX PF00293.28 gi|336255333|ref|YP_004598440.1| - 5.2e-19 68.6 1.0 6.4e-19 68.3 1.0 1.1 1 0 0 1 1 1 1 NUDIX domain AAA_17 PF13207.6 gi|336255333|ref|YP_004598440.1| - 0.028 14.8 0.1 0.042 14.3 0.0 1.4 1 1 0 1 1 1 0 AAA domain Ribosomal_S10 PF00338.22 gi|336255334|ref|YP_004598441.1| - 3.2e-13 49.7 0.0 3.6e-13 49.6 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e Peptidase_M20 PF01546.28 gi|336255335|ref|YP_004598442.1| - 4.8e-25 88.5 6.0 6.9e-25 88.0 6.0 1.2 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|336255335|ref|YP_004598442.1| - 5.7e-13 48.7 0.5 1.6e-12 47.3 0.3 1.8 2 0 0 2 2 2 1 Peptidase dimerisation domain Peptidase_M48 PF01435.18 gi|336255336|ref|YP_004598443.1| - 1.9e-25 89.8 0.1 3.3e-25 89.0 0.1 1.4 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|336255336|ref|YP_004598443.1| - 0.0013 18.0 0.0 0.0025 17.1 0.0 1.5 1 0 0 1 1 1 1 BlaR1 peptidase M56 BSP PF04450.12 gi|336255336|ref|YP_004598443.1| - 0.047 13.5 0.0 0.08 12.7 0.0 1.4 1 0 0 1 1 1 0 Peptidase of plants and bacteria SprT-like PF10263.9 gi|336255336|ref|YP_004598443.1| - 0.062 13.2 0.0 0.098 12.5 0.0 1.3 1 0 0 1 1 1 0 SprT-like family DUF4781 PF16013.5 gi|336255336|ref|YP_004598443.1| - 0.2 10.5 2.6 0.38 9.5 2.6 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4781) Herpes_UL6 PF01763.16 gi|336255336|ref|YP_004598443.1| - 0.26 9.7 0.1 0.41 9.1 0.1 1.2 1 0 0 1 1 1 0 Herpesvirus UL6 like FAD_binding_2 PF00890.24 gi|336255337|ref|YP_004598444.1| - 6.7e-12 45.2 2.9 1.2e-07 31.2 0.3 2.7 3 0 0 3 3 3 2 FAD binding domain Trp_halogenase PF04820.14 gi|336255337|ref|YP_004598444.1| - 4.1e-11 42.4 0.6 7e-07 28.4 0.0 2.1 2 0 0 2 2 2 2 Tryptophan halogenase FAD_binding_3 PF01494.19 gi|336255337|ref|YP_004598444.1| - 2.1e-09 37.1 2.1 2.2e-08 33.7 2.1 2.2 1 1 0 1 1 1 1 FAD binding domain DAO PF01266.24 gi|336255337|ref|YP_004598444.1| - 2.7e-09 37.1 9.0 0.00024 20.8 1.0 2.4 2 1 0 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.7 gi|336255337|ref|YP_004598444.1| - 7.9e-09 35.4 10.2 3e-05 23.6 1.4 2.9 3 0 0 3 3 3 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|336255337|ref|YP_004598444.1| - 1.1e-08 34.7 0.1 1.1e-08 34.7 0.1 1.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|336255337|ref|YP_004598444.1| - 6.2e-08 32.1 4.4 2.2e-07 30.3 4.3 1.9 1 1 0 1 1 1 1 Glucose inhibited division protein A NAD_binding_8 PF13450.6 gi|336255337|ref|YP_004598444.1| - 3.3e-07 30.5 4.1 2.2e-06 27.8 0.5 2.7 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 gi|336255337|ref|YP_004598444.1| - 9.4e-06 25.0 2.1 2.8e-05 23.5 0.5 2.1 2 0 0 2 2 2 1 Thi4 family Lycopene_cycl PF05834.12 gi|336255337|ref|YP_004598444.1| - 1.5e-05 24.2 4.0 0.0051 15.9 0.2 2.4 3 0 0 3 3 3 2 Lycopene cyclase protein HI0933_like PF03486.14 gi|336255337|ref|YP_004598444.1| - 2.7e-05 23.1 2.0 6.6e-05 21.8 0.3 2.0 2 0 0 2 2 2 1 HI0933-like protein AlaDh_PNT_C PF01262.21 gi|336255337|ref|YP_004598444.1| - 3.4e-05 23.2 0.3 3.4e-05 23.2 0.3 1.8 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox PF00070.27 gi|336255337|ref|YP_004598444.1| - 0.00075 20.0 6.7 0.0027 18.2 0.4 2.7 3 0 0 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|336255337|ref|YP_004598444.1| - 0.0027 17.6 0.0 0.0053 16.7 0.0 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Amino_oxidase PF01593.24 gi|336255337|ref|YP_004598444.1| - 0.0039 16.5 3.7 0.01 15.1 1.4 2.5 2 1 0 2 2 2 1 Flavin containing amine oxidoreductase ApbA PF02558.16 gi|336255337|ref|YP_004598444.1| - 0.0094 15.6 0.0 0.016 14.8 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Shikimate_DH PF01488.20 gi|336255337|ref|YP_004598444.1| - 0.021 14.9 0.0 0.1 12.6 0.0 2.1 3 0 0 3 3 3 0 Shikimate / quinate 5-dehydrogenase THF_DHG_CYH_C PF02882.19 gi|336255337|ref|YP_004598444.1| - 0.022 14.1 0.1 0.79 9.0 0.0 2.3 2 0 0 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GMC_oxred_N PF00732.19 gi|336255337|ref|YP_004598444.1| - 0.026 13.9 0.1 1.2 8.4 0.0 2.1 2 0 0 2 2 2 0 GMC oxidoreductase Ferredoxin_N PF16947.5 gi|336255337|ref|YP_004598444.1| - 0.031 14.4 1.4 0.3 11.2 0.4 2.7 2 0 0 2 2 2 0 N-terminal region of 4Fe-4S ferredoxin iron-sulfur binding Pyr_redox_3 PF13738.6 gi|336255337|ref|YP_004598444.1| - 0.042 13.1 1.4 0.1 11.8 0.5 1.9 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase ThiF PF00899.21 gi|336255337|ref|YP_004598444.1| - 0.073 12.4 0.3 0.13 11.6 0.3 1.3 1 0 0 1 1 1 0 ThiF family Fer2 PF00111.27 gi|336255338|ref|YP_004598445.1| - 4e-11 42.7 4.9 5.4e-11 42.3 4.9 1.2 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.6 gi|336255338|ref|YP_004598445.1| - 0.012 15.6 0.3 0.014 15.4 0.3 1.1 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Lactamase_B PF00753.27 gi|336255339|ref|YP_004598446.1| - 2e-17 63.9 3.3 4.1e-17 62.8 3.3 1.5 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Rhodanese PF00581.20 gi|336255339|ref|YP_004598446.1| - 9.4e-09 35.8 0.0 2.8e-08 34.2 0.0 1.9 2 0 0 2 2 2 1 Rhodanese-like domain Lactamase_B_2 PF12706.7 gi|336255339|ref|YP_004598446.1| - 0.00033 20.2 1.9 0.00067 19.2 0.7 2.1 2 1 0 2 2 2 1 Beta-lactamase superfamily domain Rubrerythrin PF02915.17 gi|336255340|ref|YP_004598447.1| - 0.013 15.9 0.3 0.033 14.6 0.3 1.6 1 0 0 1 1 1 0 Rubrerythrin COQ7 PF03232.13 gi|336255340|ref|YP_004598447.1| - 0.078 12.7 0.3 0.84 9.4 0.1 2.3 2 1 0 2 2 2 0 Ubiquinone biosynthesis protein COQ7 Tubulin PF00091.25 gi|336255341|ref|YP_004598448.1| - 1.8e-41 142.5 0.5 2.7e-41 141.9 0.5 1.3 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.8 gi|336255341|ref|YP_004598448.1| - 2.2e-36 124.0 4.2 2.8e-36 123.7 2.3 2.2 2 0 0 2 2 2 1 FtsZ family, C-terminal domain NAD_binding_10 PF13460.6 gi|336255341|ref|YP_004598448.1| - 0.0058 16.5 2.7 0.0071 16.3 0.2 2.2 3 0 0 3 3 3 1 NAD(P)H-binding Tubulin_2 PF13809.6 gi|336255341|ref|YP_004598448.1| - 0.025 13.8 7.8 0.081 12.1 2.1 2.6 1 1 1 2 2 2 0 Tubulin like tRNA_deacylase PF04414.12 gi|336255342|ref|YP_004598449.1| - 2.5e-61 206.8 0.0 3.7e-61 206.2 0.0 1.2 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase DUF2201 PF09967.9 gi|336255342|ref|YP_004598449.1| - 0.052 13.7 0.0 0.12 12.5 0.0 1.6 1 0 0 1 1 1 0 VWA-like domain (DUF2201) BAT PF15915.5 gi|336255343|ref|YP_004598450.1| - 1.7e-43 148.2 7.3 1.7e-43 148.2 7.3 2.8 2 0 0 2 2 2 1 GAF and HTH_10 associated domain PAS_4 PF08448.10 gi|336255343|ref|YP_004598450.1| - 1.3e-41 141.3 12.3 1.2e-17 64.1 0.1 5.2 5 0 0 5 5 5 3 PAS fold PAS_9 PF13426.7 gi|336255343|ref|YP_004598450.1| - 1.1e-37 128.4 0.0 2e-12 47.2 0.0 3.5 3 0 0 3 3 3 3 PAS domain PAS PF00989.25 gi|336255343|ref|YP_004598450.1| - 1.1e-34 118.8 0.0 1.9e-11 44.0 0.0 3.4 3 0 0 3 3 3 3 PAS fold PAS_3 PF08447.12 gi|336255343|ref|YP_004598450.1| - 2.9e-30 104.4 0.1 2.7e-11 43.6 0.0 3.6 3 0 0 3 3 3 3 PAS fold HTH_10 PF04967.12 gi|336255343|ref|YP_004598450.1| - 9.8e-17 60.5 0.1 2.4e-16 59.2 0.1 1.7 1 0 0 1 1 1 1 HTH DNA binding domain PAS_8 PF13188.7 gi|336255343|ref|YP_004598450.1| - 2.7e-11 43.2 2.5 6.6e-05 22.8 0.0 3.7 3 0 0 3 3 3 2 PAS domain GAF_2 PF13185.6 gi|336255343|ref|YP_004598450.1| - 1.8e-09 38.0 2.7 1.8e-09 38.0 2.7 2.6 2 0 0 2 2 2 1 GAF domain GAF PF01590.26 gi|336255343|ref|YP_004598450.1| - 1.6e-06 28.8 0.0 5.7e-06 27.0 0.0 2.1 1 0 0 1 1 1 1 GAF domain PAS_7 PF12860.7 gi|336255343|ref|YP_004598450.1| - 2.3e-05 24.5 0.0 0.54 10.4 0.0 3.9 3 0 0 3 3 3 2 PAS fold GAF_3 PF13492.6 gi|336255343|ref|YP_004598450.1| - 0.00011 22.6 0.0 0.0004 20.7 0.0 2.0 1 0 0 1 1 1 1 GAF domain PAS_11 PF14598.6 gi|336255343|ref|YP_004598450.1| - 0.0051 16.9 0.0 2.3 8.4 0.0 3.2 3 0 0 3 3 3 1 PAS domain MEKHLA PF08670.11 gi|336255343|ref|YP_004598450.1| - 0.0062 16.5 0.0 0.87 9.5 0.0 2.7 3 0 0 3 3 2 1 MEKHLA domain SCP2_2 PF13530.6 gi|336255343|ref|YP_004598450.1| - 0.013 15.9 0.0 0.056 13.8 0.0 2.2 2 0 0 2 2 1 0 Sterol carrier protein domain HTH_20 PF12840.7 gi|336255343|ref|YP_004598450.1| - 0.018 15.1 0.0 0.11 12.6 0.0 2.4 1 1 0 1 1 1 0 Helix-turn-helix domain CodY PF06018.14 gi|336255343|ref|YP_004598450.1| - 0.081 12.4 0.0 0.45 10.0 0.0 2.1 2 0 0 2 2 2 0 CodY GAF-like domain SpoVT_C PF15714.5 gi|336255343|ref|YP_004598450.1| - 0.087 12.9 0.0 0.9 9.6 0.0 2.6 3 0 0 3 3 3 0 Stage V sporulation protein T C-terminal, transcription factor HTH_30 PF13556.6 gi|336255343|ref|YP_004598450.1| - 0.1 12.4 0.3 2.5 7.9 0.1 2.8 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain Sigma70_r4 PF04545.16 gi|336255343|ref|YP_004598450.1| - 0.13 11.8 1.0 0.59 9.7 0.0 2.7 2 1 0 2 2 2 0 Sigma-70, region 4 Na_Ca_ex PF01699.24 gi|336255345|ref|YP_004598452.1| - 6.3e-45 152.8 42.3 3.5e-25 88.7 16.6 2.0 2 0 0 2 2 2 2 Sodium/calcium exchanger protein Shikimate_dh_N PF08501.11 gi|336255346|ref|YP_004598453.1| - 3.9e-27 94.3 0.0 9.2e-27 93.1 0.0 1.6 2 0 0 2 2 1 1 Shikimate dehydrogenase substrate binding domain Shikimate_DH PF01488.20 gi|336255346|ref|YP_004598453.1| - 1.9e-12 47.4 0.0 3.1e-12 46.7 0.0 1.2 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase SDH_C PF18317.1 gi|336255346|ref|YP_004598453.1| - 5.2e-12 45.3 1.0 1.2e-11 44.2 1.0 1.7 1 0 0 1 1 1 1 Shikimate 5'-dehydrogenase C-terminal domain 2-Hacid_dh_C PF02826.19 gi|336255346|ref|YP_004598453.1| - 8.7e-06 25.2 0.0 1.6e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|336255346|ref|YP_004598453.1| - 0.00016 21.3 0.1 0.00027 20.6 0.1 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain F420_oxidored PF03807.17 gi|336255346|ref|YP_004598453.1| - 0.00017 22.1 0.1 0.0003 21.3 0.1 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent adh_short PF00106.25 gi|336255346|ref|YP_004598453.1| - 0.0013 18.3 0.7 0.003 17.0 0.3 1.6 1 1 1 2 2 2 1 short chain dehydrogenase NAD_binding_2 PF03446.15 gi|336255346|ref|YP_004598453.1| - 0.0021 18.3 0.1 0.0036 17.5 0.1 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase THF_DHG_CYH_C PF02882.19 gi|336255346|ref|YP_004598453.1| - 0.006 15.9 0.0 0.12 11.7 0.0 2.2 1 1 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Sacchrp_dh_NADP PF03435.18 gi|336255346|ref|YP_004598453.1| - 0.01 16.1 0.6 0.037 14.3 0.6 2.0 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain Pyr_redox_3 PF13738.6 gi|336255346|ref|YP_004598453.1| - 0.014 14.7 0.0 0.018 14.3 0.0 1.1 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.16 gi|336255346|ref|YP_004598453.1| - 0.016 14.9 0.1 0.024 14.3 0.1 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.18 gi|336255346|ref|YP_004598453.1| - 0.017 15.0 0.2 0.025 14.5 0.2 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|336255346|ref|YP_004598453.1| - 0.025 15.0 0.0 0.041 14.3 0.0 1.3 1 0 0 1 1 1 0 Putative NAD(P)-binding ThiF PF00899.21 gi|336255346|ref|YP_004598453.1| - 0.03 13.7 0.7 0.059 12.7 0.4 1.6 2 0 0 2 2 2 0 ThiF family AlaDh_PNT_C PF01262.21 gi|336255346|ref|YP_004598453.1| - 0.033 13.5 0.3 0.052 12.8 0.3 1.2 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox_2 PF07992.14 gi|336255346|ref|YP_004598453.1| - 0.034 13.4 0.1 0.045 13.0 0.1 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase AdoHcyase_NAD PF00670.21 gi|336255346|ref|YP_004598453.1| - 0.036 14.1 0.0 0.06 13.4 0.0 1.3 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|336255346|ref|YP_004598453.1| - 0.14 12.1 0.2 0.31 11.0 0.2 1.6 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus GIDA PF01134.22 gi|336255346|ref|YP_004598453.1| - 0.32 10.0 1.3 0.65 9.0 0.8 1.6 2 0 0 2 2 2 0 Glucose inhibited division protein A HHH_5 PF14520.6 gi|336255347|ref|YP_004598454.1| - 2.5e-11 44.0 0.2 4.8e-11 43.1 0.2 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix domain DUF4332 PF14229.6 gi|336255347|ref|YP_004598454.1| - 2.6e-05 24.5 0.0 7.8e-05 22.9 0.0 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF4332) DNA_pol_lambd_f PF10391.9 gi|336255347|ref|YP_004598454.1| - 0.0018 18.1 0.0 0.0028 17.4 0.0 1.2 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda Cdd1 PF11731.8 gi|336255347|ref|YP_004598454.1| - 0.0034 17.6 0.0 0.0051 17.0 0.0 1.2 1 0 0 1 1 1 1 Pathogenicity locus Trypan_PARP PF05887.11 gi|336255347|ref|YP_004598454.1| - 0.0041 17.1 38.1 0.0041 17.1 38.1 2.6 1 1 1 2 2 2 1 Procyclic acidic repetitive protein (PARP) Mitofilin PF09731.9 gi|336255347|ref|YP_004598454.1| - 8.4 5.1 27.5 9.3 5.0 27.5 1.0 1 0 0 1 1 1 0 Mitochondrial inner membrane protein Chorismate_bind PF00425.18 gi|336255348|ref|YP_004598455.1| - 2.5e-102 341.9 0.0 3.5e-102 341.4 0.0 1.2 1 0 0 1 1 1 1 chorismate binding enzyme Anth_synt_I_N PF04715.13 gi|336255348|ref|YP_004598455.1| - 3.1e-09 37.2 0.0 1.1e-08 35.4 0.0 1.9 3 0 0 3 3 3 1 Anthranilate synthase component I, N terminal region GATase PF00117.28 gi|336255349|ref|YP_004598456.1| - 7.1e-40 136.8 0.1 4.7e-39 134.1 0.1 1.8 1 1 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|336255349|ref|YP_004598456.1| - 1.2e-09 38.3 0.3 2.7e-09 37.1 0.2 1.6 1 1 0 1 1 1 1 Peptidase C26 Peripla_BP_2 PF01497.18 gi|336255349|ref|YP_004598456.1| - 0.12 12.0 0.1 0.17 11.4 0.1 1.2 1 0 0 1 1 1 0 Periplasmic binding protein Aminotran_4 PF01063.19 gi|336255350|ref|YP_004598457.1| - 6.2e-51 173.4 0.0 7.2e-51 173.2 0.0 1.0 1 0 0 1 1 1 1 Amino-transferase class IV N6-adenineMlase PF10237.9 gi|336255351|ref|YP_004598458.1| - 3.9e-06 26.8 0.0 6.1e-06 26.1 0.0 1.3 1 0 0 1 1 1 1 Probable N6-adenine methyltransferase Sacchrp_dh_NADP PF03435.18 gi|336255352|ref|YP_004598459.1| - 3e-12 46.9 0.0 6.4e-12 45.9 0.0 1.6 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain NAD_binding_10 PF13460.6 gi|336255352|ref|YP_004598459.1| - 1.5e-05 25.0 0.2 1.5e-05 25.0 0.2 1.9 2 0 0 2 2 2 1 NAD(P)H-binding Rieske PF00355.26 gi|336255353|ref|YP_004598460.1| - 5.9e-05 22.9 0.0 7.2e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain HTH_20 PF12840.7 gi|336255354|ref|YP_004598461.1| - 0.034 14.2 3.0 2 8.6 1.8 2.9 1 1 1 2 2 2 0 Helix-turn-helix domain HTH_20 PF12840.7 gi|336255355|ref|YP_004598462.1| - 3e-07 30.4 0.4 5.5e-07 29.6 0.4 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|336255355|ref|YP_004598462.1| - 0.0035 17.2 0.0 0.0054 16.6 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|336255355|ref|YP_004598462.1| - 0.005 16.7 0.3 0.0078 16.1 0.3 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|336255355|ref|YP_004598462.1| - 0.052 13.1 0.0 0.13 11.9 0.0 1.7 1 1 1 2 2 2 0 Winged helix-turn-helix DNA-binding DprA_WH PF17782.1 gi|336255355|ref|YP_004598462.1| - 0.059 13.5 0.8 0.1 12.7 0.8 1.4 1 0 0 1 1 1 0 DprA winged helix domain Sigma70_r3 PF04539.16 gi|336255355|ref|YP_004598462.1| - 0.088 12.9 0.1 0.13 12.4 0.1 1.2 1 0 0 1 1 1 0 Sigma-70 region 3 FYDLN_acid PF09538.10 gi|336255355|ref|YP_004598462.1| - 0.44 11.3 2.7 0.41 11.3 0.9 1.7 2 0 0 2 2 2 0 Protein of unknown function (FYDLN_acid) zf-trcl PF13451.6 gi|336255355|ref|YP_004598462.1| - 0.87 9.5 7.2 0.25 11.3 1.0 2.2 1 1 1 2 2 2 0 Probable zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|336255355|ref|YP_004598462.1| - 1.4 8.7 4.1 9.1 6.1 0.3 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain NTP_transferase PF00483.23 gi|336255356|ref|YP_004598463.1| - 2e-38 132.4 0.0 2.6e-38 132.0 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|336255356|ref|YP_004598463.1| - 1e-12 48.7 0.0 1e-12 48.7 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.24 gi|336255356|ref|YP_004598463.1| - 0.0051 16.5 1.9 0.13 12.0 0.0 3.1 4 0 0 4 4 4 1 Bacterial transferase hexapeptide (six repeats) IspD PF01128.19 gi|336255356|ref|YP_004598463.1| - 0.025 14.3 0.0 0.042 13.6 0.0 1.4 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Response_reg PF00072.24 gi|336255357|ref|YP_004598464.1| - 6.3e-20 71.4 0.0 1.4e-19 70.3 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.26 gi|336255357|ref|YP_004598464.1| - 5.6e-19 68.7 0.1 1.1e-18 67.8 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_2 PF13185.6 gi|336255357|ref|YP_004598464.1| - 4.4e-18 65.9 12.9 4.9e-09 36.6 0.3 4.1 5 1 1 6 6 6 2 GAF domain GAF_3 PF13492.6 gi|336255357|ref|YP_004598464.1| - 1.8e-11 44.5 0.0 2.2e-06 28.1 0.0 2.7 2 0 0 2 2 2 2 GAF domain HisKA PF00512.25 gi|336255357|ref|YP_004598464.1| - 1.7e-09 37.6 0.3 1.7e-09 37.6 0.3 3.1 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.10 gi|336255357|ref|YP_004598464.1| - 3.7e-09 36.8 1.0 2e-08 34.5 0.1 2.8 2 0 0 2 2 2 1 PAS fold PAS PF00989.25 gi|336255357|ref|YP_004598464.1| - 1.8e-08 34.4 0.0 4.3e-08 33.1 0.0 1.7 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 gi|336255357|ref|YP_004598464.1| - 7.6e-08 32.6 0.0 2.1e-07 31.1 0.0 1.8 1 0 0 1 1 1 1 PAS domain PAS_8 PF13188.7 gi|336255357|ref|YP_004598464.1| - 2.7e-06 27.3 0.0 1.6e-05 24.8 0.0 2.4 2 0 0 2 2 1 1 PAS domain CCB2_CCB4 PF11152.8 gi|336255357|ref|YP_004598464.1| - 0.00029 20.2 0.0 0.0041 16.5 0.0 2.2 2 0 0 2 2 2 1 Cofactor assembly of complex C subunit B, CCB2/CCB4 PAS_3 PF08447.12 gi|336255357|ref|YP_004598464.1| - 0.0003 21.0 0.1 0.0017 18.6 0.0 2.3 2 0 0 2 2 2 1 PAS fold HATPase_c_2 PF13581.6 gi|336255357|ref|YP_004598464.1| - 0.0012 18.8 0.1 0.0036 17.3 0.1 1.9 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain Synaptobrevin PF00957.21 gi|336255357|ref|YP_004598464.1| - 0.027 14.2 1.7 2.5 7.9 0.2 2.4 2 0 0 2 2 2 0 Synaptobrevin PAS_7 PF12860.7 gi|336255357|ref|YP_004598464.1| - 0.081 13.1 0.0 0.46 10.6 0.0 2.3 2 0 0 2 2 2 0 PAS fold HATPase_c_3 PF13589.6 gi|336255357|ref|YP_004598464.1| - 0.086 12.7 0.1 0.42 10.4 0.0 2.0 2 0 0 2 2 2 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ThiS PF02597.20 gi|336255358|ref|YP_004598465.1| - 1.1e-10 42.0 0.0 1.2e-10 41.9 0.0 1.0 1 0 0 1 1 1 1 ThiS family LUD_dom PF02589.15 gi|336255359|ref|YP_004598466.1| - 3.7e-46 157.3 0.1 5.6e-46 156.6 0.1 1.3 1 0 0 1 1 1 1 LUD domain Fer4_8 PF13183.6 gi|336255359|ref|YP_004598466.1| - 1.6e-08 34.8 4.9 3.7e-08 33.7 4.9 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|336255359|ref|YP_004598466.1| - 4.9e-07 29.8 3.9 0.0011 19.0 0.3 2.4 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|336255359|ref|YP_004598466.1| - 5.3e-07 29.7 1.6 1.5e-06 28.3 1.7 1.7 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|336255359|ref|YP_004598466.1| - 6.1e-07 29.9 3.7 1.1e-06 29.1 3.7 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|336255359|ref|YP_004598466.1| - 2.1e-05 25.0 6.7 5.3e-05 23.7 6.7 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|336255359|ref|YP_004598466.1| - 5.7e-05 23.2 6.6 0.00028 21.0 6.6 2.0 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|336255359|ref|YP_004598466.1| - 0.00039 20.1 13.0 0.0012 18.6 2.2 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_6 PF12837.7 gi|336255359|ref|YP_004598466.1| - 0.015 15.3 2.3 0.015 15.3 2.3 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.7 gi|336255359|ref|YP_004598466.1| - 0.034 14.6 13.4 0.085 13.4 3.0 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_2 PF12797.7 gi|336255359|ref|YP_004598466.1| - 0.046 13.8 14.6 0.16 12.2 3.5 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_20 PF14691.6 gi|336255359|ref|YP_004598466.1| - 0.046 13.5 0.3 0.046 13.5 0.3 2.2 2 0 0 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_22 PF17179.4 gi|336255359|ref|YP_004598466.1| - 0.1 13.4 8.1 0.081 13.8 1.1 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_18 PF13746.6 gi|336255359|ref|YP_004598466.1| - 0.13 12.5 10.1 0.098 12.9 1.5 2.4 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|336255359|ref|YP_004598466.1| - 0.22 12.5 17.5 0.072 14.1 5.1 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_16 PF13484.6 gi|336255359|ref|YP_004598466.1| - 9.8 7.2 15.5 4.5 8.3 4.0 2.5 1 1 1 2 2 2 0 4Fe-4S double cluster binding domain LUD_dom PF02589.15 gi|336255360|ref|YP_004598467.1| - 6.9e-14 52.0 0.0 9.5e-14 51.5 0.0 1.3 1 1 0 1 1 1 1 LUD domain IclR PF01614.18 gi|336255361|ref|YP_004598468.1| - 3.8e-40 136.7 0.0 5.6e-40 136.2 0.0 1.3 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|336255361|ref|YP_004598468.1| - 3.5e-10 39.5 1.5 3.7e-09 36.3 0.4 2.6 3 0 0 3 3 3 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|336255361|ref|YP_004598468.1| - 2.8e-06 27.1 0.0 7.5e-06 25.7 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|336255361|ref|YP_004598468.1| - 3.2e-06 27.1 0.8 7.8e-06 25.9 0.2 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|336255361|ref|YP_004598468.1| - 7.8e-05 22.2 0.0 0.00017 21.1 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|336255361|ref|YP_004598468.1| - 0.00012 21.9 0.1 0.00049 19.9 0.0 2.0 2 0 0 2 2 2 1 MarR family MarR PF01047.22 gi|336255361|ref|YP_004598468.1| - 0.00018 21.3 0.1 0.00084 19.2 0.0 2.1 2 0 0 2 2 2 1 MarR family TrmB PF01978.19 gi|336255361|ref|YP_004598468.1| - 0.0007 19.4 0.0 0.013 15.4 0.0 2.4 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB DUF742 PF05331.11 gi|336255361|ref|YP_004598468.1| - 0.0039 17.0 0.0 0.0091 15.8 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF742) HTH_27 PF13463.6 gi|336255361|ref|YP_004598468.1| - 0.0079 16.7 0.0 0.022 15.3 0.0 1.7 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_23 PF13384.6 gi|336255361|ref|YP_004598468.1| - 0.015 15.1 0.0 1.9 8.4 0.0 2.6 2 0 0 2 2 2 0 Homeodomain-like domain HTH_11 PF08279.12 gi|336255361|ref|YP_004598468.1| - 0.024 14.6 0.1 0.3 11.1 0.0 2.6 2 1 0 2 2 2 0 HTH domain Fe_dep_repress PF01325.19 gi|336255361|ref|YP_004598468.1| - 0.027 14.7 0.0 0.069 13.4 0.0 1.7 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Sigma70_r4_2 PF08281.12 gi|336255361|ref|YP_004598468.1| - 0.029 14.0 0.0 0.082 12.6 0.0 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_40 PF14493.6 gi|336255361|ref|YP_004598468.1| - 0.042 14.3 0.3 0.11 13.0 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_10 PF04967.12 gi|336255361|ref|YP_004598468.1| - 0.059 13.2 0.2 0.18 11.7 0.0 1.9 2 0 0 2 2 2 0 HTH DNA binding domain HTH_34 PF13601.6 gi|336255361|ref|YP_004598468.1| - 0.06 13.5 0.0 0.27 11.5 0.0 2.0 2 0 0 2 2 2 0 Winged helix DNA-binding domain Usp PF00582.26 gi|336255362|ref|YP_004598469.1| - 1.6e-21 77.3 0.9 1.8e-21 77.2 0.9 1.0 1 0 0 1 1 1 1 Universal stress protein family tify PF06200.14 gi|336255362|ref|YP_004598469.1| - 0.16 11.3 0.0 0.37 10.1 0.0 1.5 1 0 0 1 1 1 0 tify domain Glyco_hydro_2_N PF02837.18 gi|336255363|ref|YP_004598470.1| - 5.8e-18 65.4 0.1 2e-17 63.6 0.1 1.9 1 1 0 1 1 1 1 Glycosyl hydrolases family 2, sugar binding domain Glyco_hydro_2 PF00703.21 gi|336255363|ref|YP_004598470.1| - 1.2e-14 54.9 2.0 5.6e-14 52.7 0.0 2.7 3 0 0 3 3 3 1 Glycosyl hydrolases family 2 Glyco_hydro_2_C PF02836.17 gi|336255363|ref|YP_004598470.1| - 1.3e-12 47.5 0.0 1.6e-11 43.9 0.0 2.2 1 1 0 1 1 1 1 Glycosyl hydrolases family 2, TIM barrel domain BetaGal_dom4_5 PF13364.6 gi|336255363|ref|YP_004598470.1| - 0.0031 18.1 0.0 0.0081 16.7 0.0 1.7 1 0 0 1 1 1 1 Beta-galactosidase jelly roll domain Cadherin-like PF12733.7 gi|336255363|ref|YP_004598470.1| - 0.024 15.1 9.8 0.16 12.5 0.1 3.3 3 0 0 3 3 3 0 Cadherin-like beta sandwich domain CIDE-N PF02017.15 gi|336255363|ref|YP_004598470.1| - 0.034 14.2 0.5 0.16 12.0 0.1 2.2 2 0 0 2 2 2 0 CIDE-N domain ABC_tran PF00005.27 gi|336255364|ref|YP_004598471.1| - 8.6e-32 110.5 0.0 1.4e-31 109.8 0.0 1.4 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 gi|336255364|ref|YP_004598471.1| - 2.6e-14 53.1 0.1 6.9e-14 51.8 0.1 1.8 1 0 0 1 1 1 1 TOBE domain OB_MalK PF17912.1 gi|336255364|ref|YP_004598471.1| - 3.3e-11 43.8 0.0 1.6e-10 41.7 0.0 2.3 2 0 0 2 2 1 1 MalK OB fold domain TOBE PF03459.17 gi|336255364|ref|YP_004598471.1| - 2.6e-07 30.8 0.1 7.4e-07 29.4 0.1 1.8 1 0 0 1 1 1 1 TOBE domain AAA_21 PF13304.6 gi|336255364|ref|YP_004598471.1| - 2.1e-06 27.7 0.4 0.0023 17.8 0.1 2.4 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 gi|336255364|ref|YP_004598471.1| - 0.00036 20.5 0.0 0.00074 19.5 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase Cytidylate_kin PF02224.18 gi|336255364|ref|YP_004598471.1| - 0.00042 20.1 0.4 0.11 12.3 0.1 2.3 2 0 0 2 2 2 1 Cytidylate kinase AAA_22 PF13401.6 gi|336255364|ref|YP_004598471.1| - 0.00055 20.2 0.2 0.0021 18.3 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|336255364|ref|YP_004598471.1| - 0.00068 19.3 0.0 0.0016 18.2 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|336255364|ref|YP_004598471.1| - 0.00072 19.1 0.6 0.0064 16.0 0.6 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|336255364|ref|YP_004598471.1| - 0.0014 18.4 0.5 0.1 12.3 0.0 2.1 1 1 0 2 2 2 1 AAA ATPase domain AAA_16 PF13191.6 gi|336255364|ref|YP_004598471.1| - 0.0017 18.7 0.1 0.0035 17.7 0.1 1.7 1 1 0 1 1 1 1 AAA ATPase domain CysA_C_terminal PF17850.1 gi|336255364|ref|YP_004598471.1| - 0.003 18.1 0.2 0.06 13.9 0.0 3.0 3 0 0 3 3 3 1 CysA C-terminal regulatory domain AAA_23 PF13476.6 gi|336255364|ref|YP_004598471.1| - 0.0047 17.5 0.1 0.013 16.0 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|336255364|ref|YP_004598471.1| - 0.025 15.1 0.1 0.062 13.8 0.1 1.9 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|336255364|ref|YP_004598471.1| - 0.03 13.9 0.3 0.39 10.3 0.0 2.7 3 1 1 4 4 4 0 AAA domain MMR_HSR1 PF01926.23 gi|336255364|ref|YP_004598471.1| - 0.046 13.8 0.1 0.16 12.0 0.1 2.0 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_30 PF13604.6 gi|336255364|ref|YP_004598471.1| - 0.052 13.3 0.0 0.11 12.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|336255364|ref|YP_004598471.1| - 0.058 13.5 0.1 0.18 12.0 0.0 1.8 2 0 0 2 2 1 0 AAA domain NB-ARC PF00931.22 gi|336255364|ref|YP_004598471.1| - 0.077 12.2 0.0 0.14 11.3 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain NACHT PF05729.12 gi|336255364|ref|YP_004598471.1| - 0.081 12.8 0.0 0.17 11.8 0.0 1.5 1 0 0 1 1 1 0 NACHT domain ATPase_2 PF01637.18 gi|336255364|ref|YP_004598471.1| - 0.11 12.4 0.0 0.22 11.4 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea DUF624 PF04854.14 gi|336255365|ref|YP_004598472.1| - 6.8e-05 22.9 0.1 6.8e-05 22.9 0.1 2.6 2 1 1 3 3 3 1 Protein of unknown function, DUF624 Cg6151-P PF10233.9 gi|336255365|ref|YP_004598472.1| - 0.27 11.6 7.6 0.64 10.3 6.0 2.0 1 1 1 2 2 2 0 Uncharacterized conserved protein CG6151-P BPD_transp_1 PF00528.22 gi|336255366|ref|YP_004598473.1| - 3e-17 63.0 17.9 3e-17 63.0 17.9 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF3341 PF11821.8 gi|336255366|ref|YP_004598473.1| - 0.19 11.3 4.9 0.56 9.8 1.7 2.7 2 1 0 2 2 2 0 Protein of unknown function (DUF3341) BPD_transp_1 PF00528.22 gi|336255367|ref|YP_004598474.1| - 3.8e-18 65.9 19.5 3.8e-18 65.9 19.5 2.1 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_8 PF13416.6 gi|336255368|ref|YP_004598475.1| - 1.2e-19 71.2 0.0 2e-19 70.5 0.0 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|336255368|ref|YP_004598475.1| - 4.6e-16 59.7 0.0 8e-16 58.9 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.9 gi|336255368|ref|YP_004598475.1| - 0.083 12.8 2.1 0.14 12.0 2.1 1.3 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence adh_short_C2 PF13561.6 gi|336255369|ref|YP_004598476.1| - 3e-63 213.5 1.4 3.7e-63 213.2 1.4 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|336255369|ref|YP_004598476.1| - 1.6e-47 161.5 0.4 2.1e-47 161.1 0.4 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|336255369|ref|YP_004598476.1| - 1.9e-19 70.3 0.9 2.5e-19 69.9 0.9 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|336255369|ref|YP_004598476.1| - 0.0028 17.2 0.2 0.0041 16.6 0.2 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family ADH_zinc_N PF00107.26 gi|336255369|ref|YP_004598476.1| - 0.011 15.7 0.5 0.02 14.8 0.5 1.4 1 0 0 1 1 1 0 Zinc-binding dehydrogenase Dak1_2 PF13684.6 gi|336255369|ref|YP_004598476.1| - 0.016 14.3 0.3 0.03 13.4 0.3 1.5 1 1 1 2 2 2 0 Dihydroxyacetone kinase family THF_DHG_CYH_C PF02882.19 gi|336255369|ref|YP_004598476.1| - 0.022 14.1 0.9 0.11 11.8 0.9 2.1 1 1 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NmrA PF05368.13 gi|336255369|ref|YP_004598476.1| - 0.036 13.6 1.1 0.054 13.0 1.1 1.3 1 0 0 1 1 1 0 NmrA-like family 2-Hacid_dh_C PF02826.19 gi|336255369|ref|YP_004598476.1| - 0.094 12.1 0.2 0.24 10.8 0.2 1.7 1 1 1 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.22 gi|336255370|ref|YP_004598477.1| - 1e-17 65.0 0.2 4.3e-17 63.0 0.0 2.0 2 1 1 3 3 3 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|336255370|ref|YP_004598477.1| - 0.021 14.8 0.0 0.062 13.3 0.0 1.8 1 0 0 1 1 1 0 Oxidoreductase family, C-terminal alpha/beta domain Semialdhyde_dh PF01118.24 gi|336255370|ref|YP_004598477.1| - 0.021 15.3 0.0 0.055 13.9 0.0 1.7 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain Acetyltransf_1 PF00583.25 gi|336255371|ref|YP_004598478.1| - 9.1e-14 51.7 0.0 1.3e-13 51.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|336255371|ref|YP_004598478.1| - 4.6e-10 39.8 0.0 6.9e-10 39.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|336255371|ref|YP_004598478.1| - 3.8e-08 33.3 0.0 5.5e-08 32.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|336255371|ref|YP_004598478.1| - 8.8e-07 29.7 0.0 1.1e-06 29.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|336255371|ref|YP_004598478.1| - 2.7e-05 24.3 0.0 0.025 14.7 0.0 2.1 2 0 0 2 2 2 2 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|336255371|ref|YP_004598478.1| - 0.00017 21.8 0.0 0.00024 21.3 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|336255371|ref|YP_004598478.1| - 0.045 13.7 0.0 0.074 13.0 0.0 1.3 1 0 0 1 1 1 0 FR47-like protein Cation_efflux PF01545.21 gi|336255372|ref|YP_004598479.1| - 4.9e-37 127.6 15.0 5.9e-37 127.3 15.0 1.1 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|336255372|ref|YP_004598479.1| - 0.0099 16.0 0.3 0.016 15.3 0.3 1.3 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter BAT PF15915.5 gi|336255372|ref|YP_004598479.1| - 0.093 12.6 5.8 0.15 11.9 5.8 1.3 1 0 0 1 1 1 0 GAF and HTH_10 associated domain PadR PF03551.14 gi|336255373|ref|YP_004598480.1| - 1.9e-17 63.0 0.7 2.4e-17 62.7 0.7 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.6 gi|336255373|ref|YP_004598480.1| - 0.011 16.2 0.0 0.014 15.8 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|336255373|ref|YP_004598480.1| - 0.019 14.9 0.2 0.18 11.7 0.1 2.4 2 1 0 2 2 2 0 MarR family HTH_45 PF14947.6 gi|336255373|ref|YP_004598480.1| - 0.019 15.0 0.0 0.026 14.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DUF1495 PF07381.11 gi|336255373|ref|YP_004598480.1| - 0.019 14.8 0.0 0.029 14.2 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) SprT-like PF10263.9 gi|336255374|ref|YP_004598481.1| - 6.4e-14 51.8 0.0 8.5e-14 51.4 0.0 1.3 1 0 0 1 1 1 1 SprT-like family DBD_Tnp_Mut PF03108.15 gi|336255374|ref|YP_004598481.1| - 0.027 14.5 1.6 0.065 13.2 1.6 1.6 1 0 0 1 1 1 0 MuDR family transposase Zn_ribbon_SprT PF17283.2 gi|336255374|ref|YP_004598481.1| - 0.035 14.0 0.4 0.035 14.0 0.4 1.9 2 0 0 2 2 2 0 SprT-like zinc ribbon domain BSP PF04450.12 gi|336255374|ref|YP_004598481.1| - 0.036 13.9 0.0 0.044 13.6 0.0 1.3 1 0 0 1 1 1 0 Peptidase of plants and bacteria Zn-ribbon_8 PF09723.10 gi|336255374|ref|YP_004598481.1| - 0.35 11.0 1.9 1.6 8.9 0.3 2.2 1 1 1 2 2 2 0 Zinc ribbon domain DsbB PF02600.16 gi|336255376|ref|YP_004598483.1| - 0.016 15.7 0.2 0.017 15.6 0.2 1.0 1 0 0 1 1 1 0 Disulfide bond formation protein DsbB HAD_2 PF13419.6 gi|336255377|ref|YP_004598484.1| - 2.5e-21 76.5 0.0 3.4e-21 76.1 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|336255377|ref|YP_004598484.1| - 8.6e-13 49.1 0.1 2.2e-11 44.5 0.1 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|336255377|ref|YP_004598484.1| - 1.5e-09 37.7 0.1 3.3e-09 36.7 0.1 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|336255377|ref|YP_004598484.1| - 9.4e-08 32.7 0.3 1.2e-07 32.3 0.3 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase PGP_phosphatase PF09419.10 gi|336255377|ref|YP_004598484.1| - 0.007 16.0 0.0 0.035 13.7 0.0 1.9 2 0 0 2 2 2 1 Mitochondrial PGP phosphatase Hydrolase_6 PF13344.6 gi|336255377|ref|YP_004598484.1| - 0.017 15.2 0.0 0.033 14.3 0.0 1.4 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase NIF PF03031.18 gi|336255377|ref|YP_004598484.1| - 0.024 14.4 0.0 0.1 12.4 0.0 1.9 1 1 0 1 1 1 0 NLI interacting factor-like phosphatase DHQS PF01959.16 gi|336255378|ref|YP_004598485.1| - 8.3e-142 472.2 3.9 1.1e-141 471.8 3.9 1.2 1 0 0 1 1 1 1 3-dehydroquinate synthase II QRPTase_C PF01729.19 gi|336255378|ref|YP_004598485.1| - 0.0002 21.2 2.3 0.041 13.6 0.2 2.6 2 0 0 2 2 2 2 Quinolinate phosphoribosyl transferase, C-terminal domain Hint PF01079.20 gi|336255378|ref|YP_004598485.1| - 0.0012 18.4 0.0 0.0072 15.9 0.0 2.2 2 0 0 2 2 2 1 Hint module TNT PF14021.6 gi|336255378|ref|YP_004598485.1| - 0.043 14.4 0.0 0.1 13.1 0.0 1.6 1 0 0 1 1 1 0 Tuberculosis necrotizing toxin Hint_2 PF13403.6 gi|336255378|ref|YP_004598485.1| - 0.12 12.7 3.0 13 6.1 0.1 3.2 2 1 0 3 3 3 0 Hint domain DZR PF12773.7 gi|336255379|ref|YP_004598486.1| - 4.2e-05 23.5 1.1 6e-05 23.0 1.1 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|336255379|ref|YP_004598486.1| - 0.00034 20.2 0.7 0.00049 19.7 0.7 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|336255379|ref|YP_004598486.1| - 0.00078 18.8 0.4 0.0013 18.1 0.4 1.3 1 0 0 1 1 1 1 zinc-ribbon domain UPF0547 PF10571.9 gi|336255379|ref|YP_004598486.1| - 0.0021 18.1 0.3 0.0041 17.2 0.3 1.4 1 0 0 1 1 1 1 Uncharacterised protein family UPF0547 zinc_ribbon_9 PF14369.6 gi|336255379|ref|YP_004598486.1| - 0.0081 16.4 3.2 1.6 9.0 0.3 2.3 2 0 0 2 2 2 2 zinc-ribbon zinc_ribbon_15 PF17032.5 gi|336255379|ref|YP_004598486.1| - 0.024 15.4 0.0 0.029 15.1 0.0 1.2 1 0 0 1 1 1 0 zinc-ribbon family Nudix_N_2 PF14803.6 gi|336255379|ref|YP_004598486.1| - 0.037 13.9 0.4 3.6 7.6 0.1 2.2 1 1 1 2 2 2 0 Nudix N-terminal YhfH PF14149.6 gi|336255379|ref|YP_004598486.1| - 0.31 11.0 2.1 0.51 10.4 2.1 1.3 1 0 0 1 1 1 0 YhfH-like protein SafA PF17073.5 gi|336255379|ref|YP_004598486.1| - 0.34 10.9 1.3 2 8.4 0.2 2.1 2 0 0 2 2 2 0 Two-component-system connector protein zf_Rg PF17915.1 gi|336255380|ref|YP_004598487.1| - 0.1 12.0 0.0 0.2 11.1 0.0 1.4 1 0 0 1 1 1 0 Reverse gyrase zinc finger DUF1272 PF06906.11 gi|336255380|ref|YP_004598487.1| - 0.13 12.4 0.2 1.8 8.7 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1272) DHquinase_I PF01487.15 gi|336255381|ref|YP_004598488.1| - 9.1e-46 156.9 0.1 1.1e-45 156.7 0.1 1.0 1 0 0 1 1 1 1 Type I 3-dehydroquinase DUF5615 PF18480.1 gi|336255381|ref|YP_004598488.1| - 0.14 12.0 0.2 0.34 10.7 0.2 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF5615) TFIIB PF00382.19 gi|336255382|ref|YP_004598489.1| - 1.3e-39 134.1 0.6 4.6e-20 71.4 0.0 2.4 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|336255382|ref|YP_004598489.1| - 7e-16 57.5 12.8 9.7e-16 57.0 5.9 2.1 1 1 1 2 2 2 2 TFIIB zinc-binding A2L_zn_ribbon PF08792.10 gi|336255382|ref|YP_004598489.1| - 0.0014 18.3 0.7 0.0027 17.4 0.7 1.5 1 0 0 1 1 1 1 A2L zinc ribbon domain Sigma70_r4 PF04545.16 gi|336255382|ref|YP_004598489.1| - 0.0067 15.9 0.0 0.57 9.7 0.0 3.5 3 0 0 3 3 3 1 Sigma-70, region 4 Anti-TRAP PF15777.5 gi|336255382|ref|YP_004598489.1| - 0.13 12.2 0.5 0.25 11.3 0.5 1.4 1 0 0 1 1 1 0 Tryptophan RNA-binding attenuator protein inhibitory protein HTH_Tnp_ISL3 PF13542.6 gi|336255382|ref|YP_004598489.1| - 0.26 10.7 1.4 0.64 9.5 0.3 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 Trm112p PF03966.16 gi|336255382|ref|YP_004598489.1| - 2.4 8.8 5.2 8.8 7.0 3.2 2.7 2 1 0 2 2 2 0 Trm112p-like protein NTPase_I-T PF01931.18 gi|336255383|ref|YP_004598490.1| - 1.4e-50 171.2 0.0 1.6e-50 171.1 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF84 LexA_DNA_bind PF01726.16 gi|336255384|ref|YP_004598491.1| - 0.015 15.0 0.0 0.023 14.5 0.0 1.3 1 0 0 1 1 1 0 LexA DNA binding domain HAD_2 PF13419.6 gi|336255385|ref|YP_004598492.1| - 1e-06 28.9 0.0 4.5e-06 26.9 0.0 1.9 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|336255385|ref|YP_004598492.1| - 6.5e-06 26.6 0.0 0.00071 19.9 0.0 2.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|336255385|ref|YP_004598492.1| - 0.03 14.4 0.0 0.5 10.5 0.0 2.2 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase HTH_20 PF12840.7 gi|336255386|ref|YP_004598493.1| - 7.6e-10 38.7 0.3 0.0001 22.3 0.1 2.5 2 0 0 2 2 2 2 Helix-turn-helix domain HTH_5 PF01022.20 gi|336255386|ref|YP_004598493.1| - 1.8e-09 37.3 0.0 2.4e-06 27.3 0.0 2.2 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|336255386|ref|YP_004598493.1| - 2.8e-09 36.7 0.5 1.1e-07 31.6 0.1 2.5 2 1 0 2 2 2 1 MarR family HTH_34 PF13601.6 gi|336255386|ref|YP_004598493.1| - 1.3e-08 34.9 0.0 0.0042 17.2 0.0 2.2 2 0 0 2 2 2 2 Winged helix DNA-binding domain MarR PF01047.22 gi|336255386|ref|YP_004598493.1| - 3.4e-08 33.3 0.0 0.00013 21.8 0.0 2.3 2 0 0 2 2 2 2 MarR family HTH_24 PF13412.6 gi|336255386|ref|YP_004598493.1| - 7.6e-08 31.8 0.0 1.5e-06 27.6 0.0 2.4 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|336255386|ref|YP_004598493.1| - 8.5e-06 25.6 0.0 0.00098 19.0 0.0 2.2 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|336255386|ref|YP_004598493.1| - 8.9e-05 22.4 0.3 0.00031 20.7 0.0 2.0 3 0 0 3 3 2 1 Crp-like helix-turn-helix domain Fe_dep_repress PF01325.19 gi|336255386|ref|YP_004598493.1| - 0.00012 22.2 0.0 0.00024 21.2 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_IclR PF09339.10 gi|336255386|ref|YP_004598493.1| - 0.00024 20.8 0.8 0.0017 18.1 0.2 2.6 2 1 0 2 2 2 1 IclR helix-turn-helix domain HTH_11 PF08279.12 gi|336255386|ref|YP_004598493.1| - 0.00036 20.4 0.0 0.00065 19.6 0.0 1.4 1 0 0 1 1 1 1 HTH domain DUF4423 PF14394.6 gi|336255386|ref|YP_004598493.1| - 0.00055 19.7 0.0 1.2 8.8 0.0 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF4423) DUF2250 PF10007.9 gi|336255386|ref|YP_004598493.1| - 0.019 15.1 0.0 0.25 11.5 0.0 2.3 2 1 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_36 PF13730.6 gi|336255386|ref|YP_004598493.1| - 0.022 14.7 0.0 0.049 13.6 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain GntR PF00392.21 gi|336255386|ref|YP_004598493.1| - 0.024 14.3 0.0 0.081 12.6 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_AsnC-type PF13404.6 gi|336255386|ref|YP_004598493.1| - 0.034 14.0 0.0 0.11 12.4 0.0 2.0 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_27 PF13463.6 gi|336255386|ref|YP_004598493.1| - 0.063 13.8 0.1 0.3 11.6 0.0 2.2 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_10 PF04967.12 gi|336255386|ref|YP_004598493.1| - 0.081 12.7 0.1 0.8 9.5 0.0 2.3 2 0 0 2 2 2 0 HTH DNA binding domain Crp PF00325.20 gi|336255386|ref|YP_004598493.1| - 0.19 11.4 1.8 9.6 6.0 0.0 3.2 3 0 0 3 3 3 0 Bacterial regulatory proteins, crp family Band_7 PF01145.25 gi|336255387|ref|YP_004598494.1| - 1.2e-37 129.7 4.0 1.2e-37 129.7 4.0 2.0 2 0 0 2 2 2 1 SPFH domain / Band 7 family Band_7_1 PF13421.6 gi|336255387|ref|YP_004598494.1| - 0.001 18.8 0.2 0.0021 17.8 0.2 1.5 1 0 0 1 1 1 1 SPFH domain-Band 7 family NfeD PF01957.18 gi|336255388|ref|YP_004598495.1| - 1.7e-05 25.1 0.1 4.2e-05 23.8 0.0 1.8 1 1 0 1 1 1 1 NfeD-like C-terminal, partner-binding Gamma_PGA_hydro PF05908.11 gi|336255389|ref|YP_004598496.1| - 1.2e-16 60.7 0.0 1.5e-16 60.3 0.0 1.0 1 0 0 1 1 1 1 Poly-gamma-glutamate hydrolase DeoC PF01791.9 gi|336255390|ref|YP_004598497.1| - 1.9e-45 155.4 0.1 2.2e-45 155.1 0.1 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase AP_endonuc_2 PF01261.24 gi|336255390|ref|YP_004598497.1| - 2.6e-05 23.8 0.0 3.8e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel PucR PF07905.11 gi|336255390|ref|YP_004598497.1| - 0.027 14.8 0.1 0.38 11.0 0.0 2.4 1 1 0 2 2 2 0 Purine catabolism regulatory protein-like family OMPdecase PF00215.24 gi|336255390|ref|YP_004598497.1| - 0.046 13.3 0.3 0.098 12.2 0.3 1.7 1 1 0 1 1 1 0 Orotidine 5'-phosphate decarboxylase / HUMPS family URO-D PF01208.17 gi|336255390|ref|YP_004598497.1| - 0.097 11.8 0.0 0.37 9.9 0.0 1.8 1 1 1 2 2 2 0 Uroporphyrinogen decarboxylase (URO-D) Trp_syntA PF00290.20 gi|336255391|ref|YP_004598498.1| - 1.3e-87 293.0 0.1 1.4e-87 292.8 0.1 1.0 1 0 0 1 1 1 1 Tryptophan synthase alpha chain His_biosynth PF00977.21 gi|336255391|ref|YP_004598498.1| - 0.00038 20.0 0.1 0.00077 19.0 0.1 1.5 1 0 0 1 1 1 1 Histidine biosynthesis protein PucR PF07905.11 gi|336255391|ref|YP_004598498.1| - 0.0006 20.1 0.1 0.0086 16.4 0.0 2.5 3 0 0 3 3 3 1 Purine catabolism regulatory protein-like family PcrB PF01884.17 gi|336255391|ref|YP_004598498.1| - 0.002 17.6 0.6 0.088 12.3 0.2 2.2 2 0 0 2 2 2 1 PcrB family ThiG PF05690.14 gi|336255391|ref|YP_004598498.1| - 0.028 13.7 0.3 0.045 13.0 0.3 1.3 1 0 0 1 1 1 0 Thiazole biosynthesis protein ThiG PALP PF00291.25 gi|336255392|ref|YP_004598499.1| - 3.1e-38 131.9 0.9 5.1e-38 131.2 0.9 1.3 1 1 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme IGPS PF00218.21 gi|336255393|ref|YP_004598500.1| - 2.3e-70 236.7 0.0 2.7e-70 236.5 0.0 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase QRPTase_C PF01729.19 gi|336255393|ref|YP_004598500.1| - 1.3e-06 28.3 0.2 6.1e-06 26.1 0.0 2.1 3 0 0 3 3 3 1 Quinolinate phosphoribosyl transferase, C-terminal domain NanE PF04131.14 gi|336255393|ref|YP_004598500.1| - 1.6e-05 24.2 0.1 8.5e-05 21.8 0.0 2.0 1 1 1 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase FMN_dh PF01070.18 gi|336255393|ref|YP_004598500.1| - 3.2e-05 23.1 0.3 5.8e-05 22.3 0.3 1.4 1 0 0 1 1 1 1 FMN-dependent dehydrogenase His_biosynth PF00977.21 gi|336255393|ref|YP_004598500.1| - 7.4e-05 22.3 0.0 0.0012 18.4 0.0 2.4 2 0 0 2 2 2 1 Histidine biosynthesis protein ThiG PF05690.14 gi|336255393|ref|YP_004598500.1| - 0.0056 16.0 1.3 0.034 13.4 0.2 2.2 1 1 0 2 2 2 1 Thiazole biosynthesis protein ThiG Trp_syntA PF00290.20 gi|336255393|ref|YP_004598500.1| - 0.017 14.0 0.2 0.033 13.0 0.0 1.5 2 0 0 2 2 2 0 Tryptophan synthase alpha chain PDZ PF00595.24 gi|336255393|ref|YP_004598500.1| - 0.14 12.5 0.1 0.4 11.1 0.0 1.8 2 0 0 2 2 2 0 PDZ domain DNA_binding_1 PF01035.20 gi|336255394|ref|YP_004598501.1| - 5.2e-07 29.7 0.0 8.2e-07 29.1 0.0 1.3 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain COX1 PF00115.20 gi|336255395|ref|YP_004598502.1| - 1.9e-60 204.9 39.6 1.9e-60 204.9 39.6 1.5 2 0 0 2 2 2 1 Cytochrome C and Quinol oxidase polypeptide I Amidohydro_2 PF04909.14 gi|336255397|ref|YP_004598504.1| - 1.1e-08 35.3 0.7 1.5e-08 34.8 0.7 1.3 1 1 0 1 1 1 1 Amidohydrolase Cpn60_TCP1 PF00118.24 gi|336255398|ref|YP_004598505.1| - 1.7e-147 492.0 15.8 1.9e-147 491.9 15.8 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Cas_Csa5 PF09702.10 gi|336255398|ref|YP_004598505.1| - 0.11 12.7 0.8 11 6.3 0.0 3.3 3 0 0 3 3 3 0 CRISPR-associated protein (Cas_Csa5) HalOD1 PF18545.1 gi|336255399|ref|YP_004598506.1| - 2.2e-23 82.3 0.0 3e-23 81.9 0.0 1.2 1 0 0 1 1 1 1 Halobacterial output domain 1 SAM_adeno_trans PF01887.16 gi|336255400|ref|YP_004598507.1| - 6.7e-76 254.8 0.0 7.8e-76 254.6 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase CTP_transf_like PF01467.26 gi|336255401|ref|YP_004598508.1| - 9.9e-16 58.2 0.0 4.2e-15 56.2 0.0 1.9 1 1 0 1 1 1 1 Cytidylyltransferase-like Citrate_ly_lig PF08218.11 gi|336255401|ref|YP_004598508.1| - 0.0014 18.4 0.0 0.0081 15.9 0.0 2.0 1 1 1 2 2 2 1 Citrate lyase ligase C-terminal domain HIGH_NTase1 PF05636.11 gi|336255401|ref|YP_004598508.1| - 0.15 11.2 0.0 0.25 10.5 0.0 1.3 1 0 0 1 1 1 0 HIGH Nucleotidyl Transferase Lon_C PF05362.13 gi|336255402|ref|YP_004598509.1| - 1.2e-34 119.7 3.8 1.8e-34 119.1 3.8 1.3 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain AAA_32 PF13654.6 gi|336255402|ref|YP_004598509.1| - 9.6e-31 107.1 0.0 9.7e-24 84.0 0.0 2.3 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.21 gi|336255402|ref|YP_004598509.1| - 2.3e-17 63.1 0.1 4.9e-10 39.1 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 gi|336255402|ref|YP_004598509.1| - 4.3e-15 55.8 0.0 7e-09 35.6 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain ChlI PF13541.6 gi|336255402|ref|YP_004598509.1| - 3.1e-10 39.9 0.6 7.8e-10 38.6 0.6 1.7 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase AAA_5 PF07728.14 gi|336255402|ref|YP_004598509.1| - 4.4e-10 39.7 0.0 0.0012 18.8 0.0 2.6 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|336255402|ref|YP_004598509.1| - 1.4e-06 28.8 0.0 0.037 14.5 0.0 2.7 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|336255402|ref|YP_004598509.1| - 1.8e-06 27.8 0.0 0.0019 18.0 0.0 2.5 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain MCM PF00493.23 gi|336255402|ref|YP_004598509.1| - 2.4e-06 26.8 0.1 0.061 12.4 0.0 2.4 2 0 0 2 2 2 2 MCM P-loop domain TIP49 PF06068.13 gi|336255402|ref|YP_004598509.1| - 6.3e-05 22.3 0.1 0.014 14.6 0.0 2.3 2 0 0 2 2 2 1 TIP49 P-loop domain AAA_3 PF07726.11 gi|336255402|ref|YP_004598509.1| - 8.2e-05 22.5 0.1 0.13 12.1 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Sigma54_activ_2 PF14532.6 gi|336255402|ref|YP_004598509.1| - 0.00016 21.8 0.0 0.24 11.5 0.0 2.4 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_19 PF13245.6 gi|336255402|ref|YP_004598509.1| - 0.00024 21.5 0.0 0.43 10.9 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_7 PF12775.7 gi|336255402|ref|YP_004598509.1| - 0.00038 20.0 0.0 0.0012 18.4 0.0 1.7 2 0 0 2 2 2 1 P-loop containing dynein motor region AAA_22 PF13401.6 gi|336255402|ref|YP_004598509.1| - 0.00049 20.4 0.0 0.0055 17.0 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|336255402|ref|YP_004598509.1| - 0.0015 18.3 0.0 0.12 12.0 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_PrkA PF08298.11 gi|336255402|ref|YP_004598509.1| - 0.0087 15.0 0.0 0.21 10.4 0.0 2.2 2 0 0 2 2 2 1 PrkA AAA domain PhoH PF02562.16 gi|336255402|ref|YP_004598509.1| - 0.0094 15.4 0.0 0.026 14.0 0.0 1.7 2 0 0 2 2 2 1 PhoH-like protein AAA_33 PF13671.6 gi|336255402|ref|YP_004598509.1| - 0.014 15.5 0.0 0.05 13.8 0.0 2.0 2 0 0 2 2 1 0 AAA domain DUF815 PF05673.13 gi|336255402|ref|YP_004598509.1| - 0.015 14.5 0.0 0.03 13.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_2 PF07724.14 gi|336255402|ref|YP_004598509.1| - 0.028 14.6 0.0 5.3 7.1 0.0 2.6 2 0 0 2 2 2 0 AAA domain (Cdc48 subfamily) IstB_IS21 PF01695.17 gi|336255402|ref|YP_004598509.1| - 0.032 14.0 0.0 0.072 12.8 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein ABC_tran PF00005.27 gi|336255402|ref|YP_004598509.1| - 0.034 14.7 0.0 0.11 13.0 0.0 1.8 2 0 0 2 2 1 0 ABC transporter AgrB PF04647.15 gi|336255402|ref|YP_004598509.1| - 0.037 13.3 0.3 0.057 12.7 0.3 1.2 1 0 0 1 1 1 0 Accessory gene regulator B NACHT PF05729.12 gi|336255402|ref|YP_004598509.1| - 0.041 13.8 0.0 0.077 12.9 0.0 1.4 1 0 0 1 1 1 0 NACHT domain MCM_lid PF17855.1 gi|336255402|ref|YP_004598509.1| - 0.042 14.3 0.1 0.2 12.1 0.0 2.1 1 1 1 2 2 2 0 MCM AAA-lid domain AAA_10 PF12846.7 gi|336255402|ref|YP_004598509.1| - 0.065 12.1 0.1 0.17 10.8 0.0 1.7 2 0 0 2 2 2 0 AAA-like domain TrwB_AAD_bind PF10412.9 gi|336255402|ref|YP_004598509.1| - 0.068 12.1 0.0 0.11 11.4 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain CPBP PF02517.16 gi|336255403|ref|YP_004598510.1| - 6.1e-11 42.5 11.7 6.1e-11 42.5 11.7 2.3 2 0 0 2 2 2 1 CPBP intramembrane metalloprotease DUF3742 PF12553.8 gi|336255403|ref|YP_004598510.1| - 2.4 8.3 0.0 2.4 8.3 0.0 3.0 2 1 1 3 3 3 0 Protein of unknown function (DUF3742) ABC2_membrane_5 PF13346.6 gi|336255404|ref|YP_004598511.1| - 0.02 14.4 5.7 0.024 14.2 5.7 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein IspA PF04279.15 gi|336255404|ref|YP_004598511.1| - 0.046 13.9 1.8 0.059 13.5 1.5 1.3 1 1 0 1 1 1 0 Intracellular septation protein A Glycos_transf_2 PF00535.26 gi|336255405|ref|YP_004598512.1| - 2e-15 57.0 0.2 3.2e-15 56.3 0.2 1.5 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|336255405|ref|YP_004598512.1| - 3.3e-09 37.0 2.6 1.5e-07 31.5 2.6 2.2 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|336255405|ref|YP_004598512.1| - 2.4e-05 23.9 0.0 6.6e-05 22.5 0.0 1.6 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Methyltransf_25 PF13649.6 gi|336255406|ref|YP_004598513.1| - 8.2e-24 84.1 0.1 1.8e-23 83.1 0.1 1.6 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|336255406|ref|YP_004598513.1| - 1.4e-23 83.4 0.0 2.3e-23 82.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|336255406|ref|YP_004598513.1| - 8.3e-18 64.6 0.0 1.2e-17 64.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|336255406|ref|YP_004598513.1| - 1.1e-14 54.9 0.0 3.5e-14 53.4 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|336255406|ref|YP_004598513.1| - 1.8e-14 53.6 0.0 2.5e-14 53.2 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|336255406|ref|YP_004598513.1| - 3.5e-14 53.0 0.0 4.7e-14 52.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|336255406|ref|YP_004598513.1| - 3e-06 27.0 0.0 4.6e-06 26.4 0.0 1.4 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW UPF0020 PF01170.18 gi|336255406|ref|YP_004598513.1| - 4.5e-05 23.2 0.0 0.00013 21.7 0.0 1.8 2 1 0 2 2 2 1 Putative RNA methylase family UPF0020 Methyltransf_9 PF08003.11 gi|336255406|ref|YP_004598513.1| - 0.00013 21.1 0.0 0.00017 20.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) MTS PF05175.14 gi|336255406|ref|YP_004598513.1| - 0.00062 19.4 0.0 0.00092 18.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain RrnaAD PF00398.20 gi|336255406|ref|YP_004598513.1| - 0.0019 17.3 0.0 0.0024 17.0 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_4 PF02390.17 gi|336255406|ref|YP_004598513.1| - 0.0019 17.7 0.0 0.0029 17.1 0.0 1.4 1 0 0 1 1 1 1 Putative methyltransferase CMAS PF02353.20 gi|336255406|ref|YP_004598513.1| - 0.0025 17.2 0.0 0.0055 16.0 0.0 1.5 1 1 1 2 2 2 1 Mycolic acid cyclopropane synthetase TPMT PF05724.11 gi|336255406|ref|YP_004598513.1| - 0.0036 17.0 0.0 0.0058 16.3 0.0 1.3 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) Methyltransf_20 PF12147.8 gi|336255406|ref|YP_004598513.1| - 0.012 14.8 0.0 0.016 14.3 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase TehB PF03848.14 gi|336255406|ref|YP_004598513.1| - 0.013 15.0 0.0 0.018 14.5 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB NodS PF05401.11 gi|336255406|ref|YP_004598513.1| - 0.015 15.0 0.0 0.02 14.5 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) Methyltransf_32 PF13679.6 gi|336255406|ref|YP_004598513.1| - 0.024 14.7 0.0 0.033 14.2 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain tRNA_U5-meth_tr PF05958.11 gi|336255406|ref|YP_004598513.1| - 0.041 12.9 0.1 0.098 11.6 0.0 1.5 1 1 1 2 2 2 0 tRNA (Uracil-5-)-methyltransferase DUF938 PF06080.12 gi|336255406|ref|YP_004598513.1| - 0.044 13.6 0.0 0.09 12.5 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF938) Methyltransf_15 PF09445.10 gi|336255406|ref|YP_004598513.1| - 0.066 12.8 0.0 0.088 12.4 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase PCMT PF01135.19 gi|336255406|ref|YP_004598513.1| - 0.096 12.4 0.0 0.14 11.9 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) HTH_24 PF13412.6 gi|336255407|ref|YP_004598514.1| - 0.00016 21.2 0.0 0.00025 20.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding GntR PF00392.21 gi|336255407|ref|YP_004598514.1| - 0.00099 18.7 0.3 0.0025 17.4 0.1 1.7 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family MarR_2 PF12802.7 gi|336255407|ref|YP_004598514.1| - 0.0013 18.6 0.1 0.0018 18.1 0.1 1.2 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|336255407|ref|YP_004598514.1| - 0.0015 18.5 0.4 0.0036 17.3 0.4 1.8 1 1 0 1 1 1 1 Helix-turn-helix domain TFIIE_alpha PF02002.17 gi|336255407|ref|YP_004598514.1| - 0.019 14.8 0.1 0.033 14.1 0.0 1.4 1 1 0 1 1 1 0 TFIIE alpha subunit HTH_12 PF08461.10 gi|336255407|ref|YP_004598514.1| - 0.024 14.6 0.8 0.34 10.9 0.1 2.6 1 1 1 2 2 2 0 Ribonuclease R winged-helix domain TrmB PF01978.19 gi|336255407|ref|YP_004598514.1| - 0.076 12.9 0.1 0.11 12.4 0.1 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Phage_tail_APC PF16778.5 gi|336255407|ref|YP_004598514.1| - 0.084 12.8 0.8 0.19 11.7 0.1 1.8 2 0 0 2 2 2 0 Phage tail assembly chaperone protein Lactamase_B PF00753.27 gi|336255408|ref|YP_004598515.1| - 8e-17 61.9 3.7 1.2e-16 61.4 3.7 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|336255408|ref|YP_004598515.1| - 0.00018 21.1 0.3 0.00035 20.1 0.3 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain BLACT_WH PF17778.1 gi|336255408|ref|YP_004598515.1| - 0.0015 18.5 1.0 0.0029 17.5 0.2 1.9 2 0 0 2 2 2 1 Beta-lactamase associated winged helix domain FAD_binding_4 PF01565.23 gi|336255408|ref|YP_004598515.1| - 0.062 13.0 0.1 0.12 12.1 0.1 1.4 1 0 0 1 1 1 0 FAD binding domain Lactamase_B_3 PF13483.6 gi|336255408|ref|YP_004598515.1| - 0.11 12.3 0.0 0.17 11.8 0.0 1.4 1 0 0 1 1 1 0 Beta-lactamase superfamily domain CxxCxxCC PF03692.15 gi|336255409|ref|YP_004598516.1| - 2.3e-13 50.6 0.0 8.3e-13 48.8 0.0 1.9 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain Glucosamine_iso PF01182.20 gi|336255409|ref|YP_004598516.1| - 0.029 14.2 0.9 0.11 12.4 0.0 2.0 2 0 0 2 2 2 0 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase SPW PF03779.14 gi|336255410|ref|YP_004598517.1| - 0.0049 16.4 7.7 0.0049 16.4 7.7 2.8 2 2 1 3 3 3 1 SPW repeat TM2 PF05154.16 gi|336255410|ref|YP_004598517.1| - 0.041 14.2 0.3 0.041 14.2 0.3 2.5 3 0 0 3 3 3 0 TM2 domain PcrB PF01884.17 gi|336255411|ref|YP_004598518.1| - 1.9e-33 115.8 0.5 4.6e-33 114.6 0.5 1.5 1 1 0 1 1 1 1 PcrB family His_biosynth PF00977.21 gi|336255411|ref|YP_004598518.1| - 0.00013 21.5 0.0 0.00023 20.7 0.0 1.4 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.17 gi|336255411|ref|YP_004598518.1| - 0.036 13.1 0.0 0.055 12.6 0.0 1.2 1 0 0 1 1 1 0 Dihydrouridine synthase (Dus) OKR_DC_1_N PF03709.15 gi|336255411|ref|YP_004598518.1| - 0.093 13.0 0.0 3.1 8.1 0.0 2.3 2 0 0 2 2 2 0 Orn/Lys/Arg decarboxylase, N-terminal domain TRAM PF01938.20 gi|336255412|ref|YP_004598519.1| - 6.4e-15 54.9 4.2 7.4e-15 54.7 3.4 1.5 2 0 0 2 2 2 1 TRAM domain Radical_SAM PF04055.21 gi|336255413|ref|YP_004598520.1| - 2.4e-12 47.5 0.0 2.2e-11 44.4 0.0 2.6 2 1 0 2 2 2 1 Radical SAM superfamily HHH PF00633.23 gi|336255413|ref|YP_004598520.1| - 0.00013 21.6 0.0 0.00041 20.1 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_3 PF12836.7 gi|336255413|ref|YP_004598520.1| - 0.00027 21.1 0.0 0.00058 20.1 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|336255413|ref|YP_004598520.1| - 0.0053 17.3 0.0 0.014 16.0 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix domain PsbU PF06514.11 gi|336255413|ref|YP_004598520.1| - 0.021 14.8 0.0 0.057 13.4 0.0 1.7 1 0 0 1 1 1 0 Photosystem II 12 kDa extrinsic protein (PsbU) HHH_2 PF12826.7 gi|336255413|ref|YP_004598520.1| - 0.051 13.7 0.0 0.16 12.1 0.0 1.8 2 0 0 2 2 2 0 Helix-hairpin-helix motif HSP20 PF00011.21 gi|336255415|ref|YP_004598522.1| - 7.6e-05 22.8 0.0 0.00012 22.1 0.0 1.4 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|336255415|ref|YP_004598522.1| - 0.12 12.0 0.0 0.34 10.5 0.0 1.8 1 0 0 1 1 1 0 HSP20-like domain found in ArsA DAO PF01266.24 gi|336255416|ref|YP_004598523.1| - 3.9e-58 197.7 10.1 4.5e-58 197.5 10.1 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|336255416|ref|YP_004598523.1| - 6e-09 35.5 2.0 0.00068 19.0 0.4 2.3 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|336255416|ref|YP_004598523.1| - 1.2e-07 31.8 3.3 1.2e-07 31.8 3.3 2.2 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain ApbA PF02558.16 gi|336255416|ref|YP_004598523.1| - 5.6e-06 26.1 1.0 1.1e-05 25.2 1.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA FAD_binding_2 PF00890.24 gi|336255416|ref|YP_004598523.1| - 3.8e-05 23.0 1.7 3.8e-05 23.0 1.7 1.8 2 0 0 2 2 2 1 FAD binding domain FAD_oxidored PF12831.7 gi|336255416|ref|YP_004598523.1| - 3.9e-05 23.2 3.9 6.1e-05 22.6 3.9 1.5 1 1 0 1 1 1 1 FAD dependent oxidoreductase 3HCDH_N PF02737.18 gi|336255416|ref|YP_004598523.1| - 0.00017 21.5 0.7 0.00034 20.5 0.7 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox PF00070.27 gi|336255416|ref|YP_004598523.1| - 0.001 19.6 0.7 0.0028 18.2 0.7 1.8 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|336255416|ref|YP_004598523.1| - 0.0036 16.4 2.1 0.0043 16.2 1.2 1.5 2 0 0 2 2 2 1 Glucose inhibited division protein A HI0933_like PF03486.14 gi|336255416|ref|YP_004598523.1| - 0.0037 16.0 1.1 0.0073 15.0 0.8 1.6 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_3 PF13738.6 gi|336255416|ref|YP_004598523.1| - 0.0052 16.1 0.3 0.0099 15.2 0.3 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.6 gi|336255416|ref|YP_004598523.1| - 0.0055 17.1 0.0 0.011 16.2 0.0 1.6 1 0 0 1 1 1 1 Putative NAD(P)-binding ThiF PF00899.21 gi|336255416|ref|YP_004598523.1| - 0.0074 15.7 0.3 0.013 14.8 0.3 1.3 1 0 0 1 1 1 1 ThiF family Thi4 PF01946.17 gi|336255416|ref|YP_004598523.1| - 0.0093 15.2 1.1 0.02 14.2 1.1 1.5 1 0 0 1 1 1 1 Thi4 family 2-Hacid_dh_C PF02826.19 gi|336255416|ref|YP_004598523.1| - 0.02 14.3 0.2 0.035 13.5 0.2 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FAD_binding_3 PF01494.19 gi|336255416|ref|YP_004598523.1| - 0.031 13.5 1.2 0.031 13.5 1.2 2.0 2 0 0 2 2 2 0 FAD binding domain Hydant_A_N PF05378.13 gi|336255416|ref|YP_004598523.1| - 0.069 12.9 0.2 0.14 11.8 0.1 1.5 2 0 0 2 2 1 0 Hydantoinase/oxoprolinase N-terminal region NAD_binding_9 PF13454.6 gi|336255416|ref|YP_004598523.1| - 0.069 13.1 2.3 5 7.1 0.3 2.4 2 0 0 2 2 2 0 FAD-NAD(P)-binding Amino_oxidase PF01593.24 gi|336255416|ref|YP_004598523.1| - 0.069 12.4 2.2 1.9 7.7 0.3 2.4 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase NAD_binding_2 PF03446.15 gi|336255416|ref|YP_004598523.1| - 0.1 12.7 0.3 0.23 11.6 0.1 1.7 2 0 0 2 2 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase UDPG_MGDP_dh_N PF03721.14 gi|336255416|ref|YP_004598523.1| - 0.14 11.7 0.1 0.21 11.1 0.1 1.2 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NUDIX PF00293.28 gi|336255418|ref|YP_004598525.1| - 7.8e-14 51.8 0.1 1.1e-13 51.4 0.1 1.2 1 0 0 1 1 1 1 NUDIX domain DUF3943 PF13084.6 gi|336255418|ref|YP_004598525.1| - 0.15 12.0 0.0 0.23 11.3 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3943) PUB_1 PF18486.1 gi|336255419|ref|YP_004598526.1| - 0.0093 15.8 2.1 0.018 14.9 0.2 2.1 2 0 0 2 2 2 1 PNGase/UBA- or UBX-containing domain HupF_HypC PF01455.18 gi|336255420|ref|YP_004598527.1| - 0.16 12.1 0.1 0.81 9.9 0.0 2.1 2 0 0 2 2 2 0 HupF/HypC family PhnA_Zn_Ribbon PF08274.12 gi|336255421|ref|YP_004598528.1| - 0.0015 18.5 1.3 0.025 14.5 0.1 2.2 2 0 0 2 2 2 1 PhnA Zinc-Ribbon DZR PF12773.7 gi|336255421|ref|YP_004598528.1| - 0.0079 16.2 0.3 0.011 15.8 0.3 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc-ribbons_6 PF07191.12 gi|336255421|ref|YP_004598528.1| - 0.026 14.5 1.2 0.095 12.7 1.2 1.7 1 1 0 1 1 1 0 zinc-ribbons zinc_ribbon_9 PF14369.6 gi|336255421|ref|YP_004598528.1| - 0.047 13.9 1.9 0.078 13.3 1.9 1.4 1 1 0 1 1 1 0 zinc-ribbon Nudix_N_2 PF14803.6 gi|336255421|ref|YP_004598528.1| - 0.14 12.1 2.9 0.4 10.7 0.2 2.2 2 0 0 2 2 2 0 Nudix N-terminal PfkB PF00294.24 gi|336255422|ref|YP_004598529.1| - 1.7e-15 57.1 4.6 1.2e-12 47.8 2.4 2.1 2 0 0 2 2 2 2 pfkB family carbohydrate kinase DHHA1 PF02272.19 gi|336255423|ref|YP_004598530.1| - 7.2e-11 42.7 0.1 1.3e-10 41.8 0.1 1.3 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.20 gi|336255423|ref|YP_004598530.1| - 5.2e-10 39.5 0.0 8.4e-10 38.8 0.0 1.3 1 0 0 1 1 1 1 DHH family Epimerase PF01370.21 gi|336255424|ref|YP_004598531.1| - 7.4e-17 61.6 0.0 1.1e-16 61.1 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 gi|336255424|ref|YP_004598531.1| - 6.3e-15 55.5 0.0 8.6e-15 55.1 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding 3Beta_HSD PF01073.19 gi|336255424|ref|YP_004598531.1| - 3.1e-08 33.0 0.0 2.4e-07 30.1 0.0 2.0 1 1 0 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family TrkA_N PF02254.18 gi|336255424|ref|YP_004598531.1| - 3.5e-08 33.7 0.7 8e-08 32.5 0.4 1.7 2 0 0 2 2 2 1 TrkA-N domain GDP_Man_Dehyd PF16363.5 gi|336255424|ref|YP_004598531.1| - 1.4e-07 31.3 0.0 4.8e-07 29.5 0.0 1.7 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase ApbA PF02558.16 gi|336255424|ref|YP_004598531.1| - 6.5e-06 25.9 0.1 1.2e-05 25.0 0.1 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA UDPG_MGDP_dh_N PF03721.14 gi|336255424|ref|YP_004598531.1| - 4.5e-05 23.1 0.0 7.3e-05 22.4 0.0 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain F420_oxidored PF03807.17 gi|336255424|ref|YP_004598531.1| - 6.2e-05 23.5 0.1 0.00013 22.5 0.1 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Pyr_redox PF00070.27 gi|336255424|ref|YP_004598531.1| - 0.00028 21.4 0.2 0.00071 20.1 0.2 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DUF1731 PF08338.11 gi|336255424|ref|YP_004598531.1| - 0.00037 20.3 0.0 0.00078 19.2 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1731) NAD_binding_2 PF03446.15 gi|336255424|ref|YP_004598531.1| - 0.0063 16.7 0.0 0.013 15.7 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase GFO_IDH_MocA PF01408.22 gi|336255424|ref|YP_004598531.1| - 0.0096 16.7 0.1 0.025 15.4 0.0 1.7 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold RmlD_sub_bind PF04321.17 gi|336255424|ref|YP_004598531.1| - 0.016 14.3 0.2 0.083 12.0 0.1 2.0 2 1 0 2 2 2 0 RmlD substrate binding domain Pyr_redox_2 PF07992.14 gi|336255424|ref|YP_004598531.1| - 0.03 13.6 0.2 0.043 13.0 0.2 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|336255424|ref|YP_004598531.1| - 0.031 14.2 0.3 0.1 12.4 0.1 1.9 1 1 1 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain adh_short PF00106.25 gi|336255424|ref|YP_004598531.1| - 0.053 13.0 0.3 0.15 11.5 0.1 1.7 1 1 1 2 2 2 0 short chain dehydrogenase 2-Hacid_dh_C PF02826.19 gi|336255424|ref|YP_004598531.1| - 0.18 11.1 0.0 0.32 10.3 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Methyltransf_18 PF12847.7 gi|336255425|ref|YP_004598532.1| - 0.1 12.6 0.1 0.15 12.0 0.1 1.3 1 0 0 1 1 1 0 Methyltransferase domain HTH_18 PF12833.7 gi|336255426|ref|YP_004598533.1| - 0.15 12.3 1.5 0.78 10.0 0.3 2.0 1 1 1 2 2 2 0 Helix-turn-helix domain GFO_IDH_MocA PF01408.22 gi|336255427|ref|YP_004598534.1| - 3.2e-25 89.3 0.1 5.1e-25 88.6 0.1 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|336255427|ref|YP_004598534.1| - 3.9e-10 39.7 0.0 9.8e-10 38.5 0.0 1.7 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain 2-Hacid_dh_C PF02826.19 gi|336255427|ref|YP_004598534.1| - 9.2e-05 21.9 0.0 0.00015 21.1 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|336255427|ref|YP_004598534.1| - 0.00012 22.3 0.0 0.001 19.3 0.0 2.1 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|336255427|ref|YP_004598534.1| - 0.00023 21.7 0.0 0.00045 20.7 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent CoA_binding PF02629.19 gi|336255427|ref|YP_004598534.1| - 0.0028 18.3 0.0 0.0078 16.9 0.0 1.7 2 0 0 2 2 2 1 CoA binding domain IlvN PF07991.12 gi|336255427|ref|YP_004598534.1| - 0.0033 17.0 0.0 0.006 16.2 0.0 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_binding_3 PF03447.16 gi|336255427|ref|YP_004598534.1| - 0.0091 16.6 0.1 0.015 15.9 0.1 1.3 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain Oxidored_q3 PF00499.20 gi|336255428|ref|YP_004598535.1| - 0.018 14.8 0.0 0.02 14.6 0.0 1.1 1 0 0 1 1 1 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 ABC_tran PF00005.27 gi|336255429|ref|YP_004598536.1| - 1.4e-33 116.3 0.0 2.4e-33 115.5 0.0 1.4 1 0 0 1 1 1 1 ABC transporter OB_MalK PF17912.1 gi|336255429|ref|YP_004598536.1| - 3.9e-12 46.8 0.1 1.2e-11 45.2 0.1 1.9 1 0 0 1 1 1 1 MalK OB fold domain AAA_21 PF13304.6 gi|336255429|ref|YP_004598536.1| - 7.7e-07 29.2 0.0 0.013 15.3 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|336255429|ref|YP_004598536.1| - 1.4e-06 27.9 0.2 8.9e-06 25.3 0.2 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain CysA_C_terminal PF17850.1 gi|336255429|ref|YP_004598536.1| - 2e-05 25.0 0.3 0.001 19.6 0.1 2.8 2 0 0 2 2 2 1 CysA C-terminal regulatory domain TOBE_2 PF08402.10 gi|336255429|ref|YP_004598536.1| - 6.8e-05 23.0 0.2 0.0042 17.2 0.1 2.8 1 1 0 1 1 1 1 TOBE domain AAA_15 PF13175.6 gi|336255429|ref|YP_004598536.1| - 0.00055 19.8 0.0 0.2 11.3 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.6 gi|336255429|ref|YP_004598536.1| - 0.0032 17.2 0.2 0.029 14.1 0.0 2.4 2 0 0 2 2 2 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|336255429|ref|YP_004598536.1| - 0.0038 17.1 0.1 0.019 14.9 0.0 1.9 2 0 0 2 2 2 1 RsgA GTPase Rad17 PF03215.15 gi|336255429|ref|YP_004598536.1| - 0.012 15.5 0.0 0.017 15.0 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain TOBE PF03459.17 gi|336255429|ref|YP_004598536.1| - 0.017 15.4 0.1 0.55 10.6 0.0 2.9 2 1 0 2 2 2 0 TOBE domain AAA_16 PF13191.6 gi|336255429|ref|YP_004598536.1| - 0.02 15.3 0.0 0.054 13.9 0.0 1.8 1 1 0 1 1 1 0 AAA ATPase domain AAA_22 PF13401.6 gi|336255429|ref|YP_004598536.1| - 0.026 14.8 0.4 0.068 13.5 0.4 1.8 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|336255429|ref|YP_004598536.1| - 0.058 13.8 0.4 0.16 12.4 0.4 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.22 gi|336255429|ref|YP_004598536.1| - 0.078 13.4 0.0 0.19 12.1 0.0 1.7 1 0 0 1 1 1 0 RNA helicase AAA_33 PF13671.6 gi|336255429|ref|YP_004598536.1| - 0.14 12.3 1.3 0.44 10.7 1.3 1.9 1 1 0 1 1 1 0 AAA domain AAA_7 PF12775.7 gi|336255429|ref|YP_004598536.1| - 0.17 11.4 0.0 0.31 10.5 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region BPD_transp_1 PF00528.22 gi|336255430|ref|YP_004598537.1| - 1.5e-11 44.4 19.0 1.5e-11 44.4 19.0 2.3 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF2207 PF09972.9 gi|336255430|ref|YP_004598537.1| - 2.4 6.8 8.9 9.9 4.8 4.7 2.8 1 1 1 2 2 2 0 Predicted membrane protein (DUF2207) BPD_transp_1 PF00528.22 gi|336255431|ref|YP_004598538.1| - 5.6e-15 55.6 15.0 5.6e-15 55.6 15.0 2.4 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF2157 PF09925.9 gi|336255431|ref|YP_004598538.1| - 5.2 6.9 9.8 0.62 9.8 2.0 2.8 2 1 0 2 2 2 0 Predicted membrane protein (DUF2157) SBP_bac_1 PF01547.25 gi|336255432|ref|YP_004598539.1| - 1.2e-24 87.8 0.8 2.1e-24 87.1 0.8 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|336255432|ref|YP_004598539.1| - 6e-20 72.2 0.9 9.4e-20 71.6 0.9 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.9 gi|336255432|ref|YP_004598539.1| - 5.2e-06 26.1 1.2 5.2e-06 26.1 1.2 2.1 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence Glyco_hydro_18 PF00704.28 gi|336255432|ref|YP_004598539.1| - 0.0044 16.8 0.0 0.011 15.5 0.0 1.6 1 1 0 1 1 1 1 Glycosyl hydrolases family 18 Regulator_TrmB PF11495.8 gi|336255433|ref|YP_004598540.1| - 2.3e-67 226.6 0.1 2.9e-67 226.3 0.1 1.1 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.19 gi|336255433|ref|YP_004598540.1| - 6.5e-16 58.0 0.0 1.4e-15 56.9 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|336255433|ref|YP_004598540.1| - 0.00011 22.0 1.4 0.0025 17.6 0.0 3.0 3 0 0 3 3 3 1 MarR family T2SSM PF04612.12 gi|336255433|ref|YP_004598540.1| - 0.0054 16.8 0.7 0.0096 16.0 0.7 1.3 1 0 0 1 1 1 1 Type II secretion system (T2SS), protein M HTH_IclR PF09339.10 gi|336255433|ref|YP_004598540.1| - 0.014 15.2 0.1 0.058 13.2 0.0 2.0 2 0 0 2 2 2 0 IclR helix-turn-helix domain PadR PF03551.14 gi|336255433|ref|YP_004598540.1| - 0.015 15.3 0.0 0.037 14.0 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_27 PF13463.6 gi|336255433|ref|YP_004598540.1| - 0.034 14.6 0.1 0.32 11.5 0.0 2.6 2 1 1 3 3 3 0 Winged helix DNA-binding domain MarR PF01047.22 gi|336255433|ref|YP_004598540.1| - 0.058 13.3 0.0 0.16 11.9 0.0 1.9 1 0 0 1 1 1 0 MarR family DUF4159 PF13709.6 gi|336255433|ref|YP_004598540.1| - 0.16 11.4 0.0 0.25 10.7 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4159) Latarcin PF10279.9 gi|336255433|ref|YP_004598540.1| - 0.16 12.4 0.2 0.37 11.2 0.2 1.6 1 0 0 1 1 1 0 Latarcin precursor ABC_tran_CTD PF16326.5 gi|336255433|ref|YP_004598540.1| - 6.3 7.1 7.6 0.33 11.2 0.5 2.4 3 0 0 3 3 3 0 ABC transporter C-terminal domain TerY_C PF15616.6 gi|336255434|ref|YP_004598541.1| - 0.0094 16.1 1.9 0.017 15.2 1.9 1.3 1 0 0 1 1 1 1 TerY-C metal binding domain zf-NADH-PPase PF09297.11 gi|336255434|ref|YP_004598541.1| - 0.062 13.0 2.2 6.6 6.5 0.1 2.6 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|336255434|ref|YP_004598541.1| - 0.3 11.1 2.9 7.9 6.5 0.4 2.4 2 0 0 2 2 2 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|336255434|ref|YP_004598541.1| - 0.4 10.9 4.7 5.3 7.2 0.0 2.5 2 0 0 2 2 2 0 Zinc ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|336255434|ref|YP_004598541.1| - 0.57 10.2 2.9 2.9 7.9 2.9 2.0 1 1 0 1 1 1 0 PhnA Zinc-Ribbon zf-ribbon_3 PF13248.6 gi|336255434|ref|YP_004598541.1| - 0.62 9.5 6.2 0.31 10.5 1.4 2.4 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_9 PF14369.6 gi|336255434|ref|YP_004598541.1| - 0.84 9.9 3.6 25 5.2 0.0 2.5 2 0 0 2 2 2 0 zinc-ribbon Rubredoxin PF00301.20 gi|336255434|ref|YP_004598541.1| - 3.9 7.6 6.4 3.7 7.7 0.1 3.2 3 0 0 3 3 3 0 Rubredoxin GPDPase_memb PF10110.9 gi|336255435|ref|YP_004598542.1| - 1.5e-05 24.0 0.1 1.5e-05 24.0 0.1 2.1 1 1 1 2 2 2 1 Membrane domain of glycerophosphoryl diester phosphodiesterase DUF975 PF06161.11 gi|336255435|ref|YP_004598542.1| - 0.0032 17.3 4.5 0.0061 16.4 4.2 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF975) UPF0259 PF06790.11 gi|336255435|ref|YP_004598542.1| - 0.0082 15.9 4.2 0.0082 15.9 4.2 1.9 1 1 1 2 2 2 1 Uncharacterised protein family (UPF0259) DUF4271 PF14093.6 gi|336255435|ref|YP_004598542.1| - 0.089 12.7 5.5 0.16 11.9 5.5 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4271) YpmT PF17431.2 gi|336255435|ref|YP_004598542.1| - 0.17 11.9 0.3 0.17 11.9 0.3 1.9 2 0 0 2 2 2 0 Uncharacterized YmpT-like Osw5 PF17062.5 gi|336255435|ref|YP_004598542.1| - 0.44 10.7 11.1 1.2 9.3 11.1 1.7 1 0 0 1 1 1 0 Outer spore wall 5 Sec62 PF03839.16 gi|336255435|ref|YP_004598542.1| - 3.5 7.1 6.0 0.56 9.7 2.2 1.6 2 0 0 2 2 2 0 Translocation protein Sec62 PfkB PF00294.24 gi|336255436|ref|YP_004598543.1| - 3.7e-64 216.9 0.0 4.2e-64 216.7 0.0 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase SCFA_trans PF02667.14 gi|336255437|ref|YP_004598544.1| - 1.1e-37 130.2 14.3 1.3e-37 129.9 14.3 1.1 1 0 0 1 1 1 1 Short chain fatty acid transporter SCFA_trans PF02667.14 gi|336255438|ref|YP_004598545.1| - 7.2e-111 371.4 21.1 8.8e-111 371.1 21.1 1.1 1 0 0 1 1 1 1 Short chain fatty acid transporter DUF1648 PF07853.11 gi|336255438|ref|YP_004598545.1| - 0.0018 17.9 0.3 0.014 15.0 0.3 2.7 1 0 0 1 1 1 1 Protein of unknown function (DUF1648) Glyco_hydro_3 PF00933.21 gi|336255439|ref|YP_004598546.1| - 2.3e-64 217.8 0.0 3e-64 217.4 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain Glyco_hydro_3_C PF01915.22 gi|336255439|ref|YP_004598546.1| - 1e-37 130.1 0.0 2.9e-37 128.6 0.0 1.7 2 0 0 2 2 2 1 Glycosyl hydrolase family 3 C-terminal domain Fn3-like PF14310.6 gi|336255439|ref|YP_004598546.1| - 8.6e-16 57.8 1.8 2.8e-15 56.2 0.2 2.3 2 0 0 2 2 2 1 Fibronectin type III-like domain TAT_signal PF10518.9 gi|336255439|ref|YP_004598546.1| - 0.00018 21.2 6.0 0.00044 20.0 6.0 1.7 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence CAT PF00302.18 gi|336255440|ref|YP_004598547.1| - 0.17 11.8 0.0 0.24 11.3 0.0 1.2 1 0 0 1 1 1 0 Chloramphenicol acetyltransferase FliT PF05400.13 gi|336255440|ref|YP_004598547.1| - 3.7 8.4 8.1 1.5 9.7 2.3 2.6 3 0 0 3 3 3 0 Flagellar protein FliT Nitroreductase PF00881.24 gi|336255441|ref|YP_004598548.1| - 2.1e-21 76.7 0.5 1.5e-11 44.6 0.0 2.1 1 1 1 2 2 2 2 Nitroreductase family TM1586_NiRdase PF14512.6 gi|336255441|ref|YP_004598548.1| - 5.2e-06 26.2 0.0 0.0002 21.0 0.0 2.1 2 0 0 2 2 2 2 Putative TM nitroreductase Meth_synt_2 PF01717.18 gi|336255442|ref|YP_004598549.1| - 1.3e-58 198.8 0.0 2e-58 198.2 0.0 1.2 1 0 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.12 gi|336255442|ref|YP_004598549.1| - 7.2e-14 52.0 0.0 1.1e-13 51.4 0.0 1.2 1 0 0 1 1 1 1 Cobalamin-independent synthase, N-terminal domain URO-D PF01208.17 gi|336255442|ref|YP_004598549.1| - 7.3e-05 22.1 0.0 0.00011 21.4 0.0 1.3 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) YbaB_DNA_bd PF02575.16 gi|336255442|ref|YP_004598549.1| - 0.12 12.6 0.0 0.85 9.9 0.0 2.4 2 1 0 2 2 2 0 YbaB/EbfC DNA-binding family Meth_synt_1 PF08267.12 gi|336255443|ref|YP_004598550.1| - 1.2e-14 54.6 0.0 7.1e-14 52.0 0.0 1.8 1 1 1 2 2 2 1 Cobalamin-independent synthase, N-terminal domain Meth_synt_2 PF01717.18 gi|336255443|ref|YP_004598550.1| - 3.6e-11 42.9 0.0 5.1e-11 42.4 0.0 1.1 1 0 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain GntP_permease PF02447.16 gi|336255444|ref|YP_004598551.1| - 2.4e-92 309.9 25.0 2.8e-92 309.7 25.0 1.0 1 0 0 1 1 1 1 GntP family permease CitMHS PF03600.16 gi|336255444|ref|YP_004598551.1| - 9.1e-17 61.2 26.4 9.1e-17 61.2 26.4 2.1 2 1 0 2 2 2 1 Citrate transporter Methyltransf_25 PF13649.6 gi|336255445|ref|YP_004598552.1| - 5.6e-08 33.4 0.0 2.3e-07 31.4 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|336255445|ref|YP_004598552.1| - 8.3e-08 32.8 0.0 1.2e-06 29.1 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.14 gi|336255445|ref|YP_004598552.1| - 8.4e-06 25.4 0.0 2.9e-05 23.7 0.0 1.9 2 1 0 2 2 2 1 Methyltransferase small domain Methyltransf_12 PF08242.12 gi|336255445|ref|YP_004598552.1| - 0.00013 22.6 0.0 0.0018 18.9 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|336255445|ref|YP_004598552.1| - 0.00015 21.6 0.0 0.00023 21.0 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|336255445|ref|YP_004598552.1| - 0.0022 17.9 0.0 0.016 15.0 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|336255445|ref|YP_004598552.1| - 0.046 13.1 0.0 0.069 12.5 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_32 PF13679.6 gi|336255445|ref|YP_004598552.1| - 0.054 13.5 0.0 0.075 13.0 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain UPF0146 PF03686.13 gi|336255445|ref|YP_004598552.1| - 0.16 11.8 0.0 0.27 11.1 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0146) MS_channel PF00924.18 gi|336255446|ref|YP_004598553.1| - 1.5e-46 158.6 0.1 2.3e-46 157.9 0.1 1.3 1 0 0 1 1 1 1 Mechanosensitive ion channel MIG-14_Wnt-bd PF06664.12 gi|336255446|ref|YP_004598553.1| - 0.15 11.2 1.0 0.83 8.8 1.7 1.7 2 0 0 2 2 2 0 Wnt-binding factor required for Wnt secretion PAP2 PF01569.21 gi|336255446|ref|YP_004598553.1| - 9.1 6.1 6.5 1.2 8.9 0.7 2.2 1 1 1 2 2 2 0 PAP2 superfamily RrnaAD PF00398.20 gi|336255447|ref|YP_004598554.1| - 3e-49 167.5 0.0 3.8e-49 167.1 0.0 1.0 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_25 PF13649.6 gi|336255447|ref|YP_004598554.1| - 0.0014 19.3 0.1 0.0037 17.9 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain NodS PF05401.11 gi|336255447|ref|YP_004598554.1| - 0.018 14.6 0.0 0.04 13.5 0.0 1.5 1 0 0 1 1 1 0 Nodulation protein S (NodS) Methyltransf_12 PF08242.12 gi|336255447|ref|YP_004598554.1| - 0.02 15.7 0.2 0.053 14.3 0.0 1.8 2 0 0 2 2 2 0 Methyltransferase domain Glyco_hydro_4C PF11975.8 gi|336255447|ref|YP_004598554.1| - 0.02 15.0 0.0 0.029 14.4 0.0 1.3 1 0 0 1 1 1 0 Family 4 glycosyl hydrolase C-terminal domain Methyltransf_11 PF08241.12 gi|336255447|ref|YP_004598554.1| - 0.035 14.8 0.1 0.084 13.5 0.0 1.7 2 0 0 2 2 2 0 Methyltransferase domain Spermine_synth PF01564.17 gi|336255447|ref|YP_004598554.1| - 0.092 12.1 0.0 0.15 11.4 0.0 1.3 1 0 0 1 1 1 0 Spermine/spermidine synthase domain Usp PF00582.26 gi|336255448|ref|YP_004598555.1| - 1.3e-22 80.9 1.0 1.8e-22 80.4 1.0 1.2 1 0 0 1 1 1 1 Universal stress protein family AP_endonuc_2 PF01261.24 gi|336255448|ref|YP_004598555.1| - 0.031 13.7 0.7 0.14 11.6 0.7 1.8 1 1 1 2 2 2 0 Xylose isomerase-like TIM barrel TOBE PF03459.17 gi|336255448|ref|YP_004598555.1| - 0.56 10.5 3.4 1.2 9.5 0.5 2.2 2 0 0 2 2 2 0 TOBE domain DUF655 PF04919.12 gi|336255449|ref|YP_004598556.1| - 7e-63 211.8 0.3 8.1e-63 211.6 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_3 PF12836.7 gi|336255449|ref|YP_004598556.1| - 0.00074 19.7 0.0 0.0013 18.9 0.0 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_6 PF14579.6 gi|336255449|ref|YP_004598556.1| - 0.0038 17.5 0.0 0.007 16.6 0.0 1.5 1 1 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|336255449|ref|YP_004598556.1| - 0.25 12.0 0.9 2 9.1 0.4 2.5 2 1 0 2 2 2 0 Helix-hairpin-helix domain RNA_pol_Rpb4 PF03874.16 gi|336255450|ref|YP_004598557.1| - 1.3e-11 44.8 1.4 1.7e-11 44.5 1.4 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb4 Arg_decarbox_C PF17944.1 gi|336255450|ref|YP_004598557.1| - 0.024 15.2 1.1 3.8 8.1 0.3 2.5 2 0 0 2 2 2 0 Arginine decarboxylase C-terminal helical extension DUF1507 PF07408.11 gi|336255450|ref|YP_004598557.1| - 0.025 14.4 0.1 0.16 11.8 0.0 2.3 1 1 2 3 3 3 0 Protein of unknown function (DUF1507) RNA_pol_Rpb1_6 PF04992.14 gi|336255450|ref|YP_004598557.1| - 0.032 14.1 0.6 0.043 13.6 0.6 1.5 1 1 0 1 1 1 0 RNA polymerase Rpb1, domain 6 CRR7 PF12095.8 gi|336255450|ref|YP_004598557.1| - 0.037 14.5 4.5 0.77 10.2 0.4 2.2 1 1 1 2 2 2 0 Protein CHLORORESPIRATORY REDUCTION 7 DUF3106 PF11304.8 gi|336255450|ref|YP_004598557.1| - 0.048 14.1 0.1 0.61 10.6 0.1 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF3106) Cas9_a PF18470.1 gi|336255450|ref|YP_004598557.1| - 0.073 12.6 0.0 0.12 11.9 0.0 1.4 1 0 0 1 1 1 0 Cas9 alpha-helical lobe domain Ribosomal_L21e PF01157.18 gi|336255451|ref|YP_004598558.1| - 2.1e-33 114.2 0.2 2.3e-33 114.0 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e Myosin_N PF02736.19 gi|336255451|ref|YP_004598558.1| - 0.24 11.2 1.3 0.81 9.6 0.6 1.9 2 0 0 2 2 2 0 Myosin N-terminal SH3-like domain Cys_Met_Meta_PP PF01053.20 gi|336255453|ref|YP_004598560.1| - 5.5e-153 509.0 0.0 6.2e-153 508.8 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Met_gamma_lyase PF06838.11 gi|336255453|ref|YP_004598560.1| - 6.9e-05 21.5 0.0 0.0001 21.0 0.0 1.2 1 0 0 1 1 1 1 Methionine gamma-lyase Aminotran_5 PF00266.19 gi|336255453|ref|YP_004598560.1| - 0.00015 20.9 0.0 0.00023 20.2 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|336255453|ref|YP_004598560.1| - 0.0074 15.6 0.1 0.021 14.2 0.0 1.5 1 1 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family BRK PF07533.16 gi|336255453|ref|YP_004598560.1| - 0.03 14.0 0.1 0.97 9.1 0.0 2.5 2 0 0 2 2 2 0 BRK domain Lactamase_B PF00753.27 gi|336255454|ref|YP_004598561.1| - 1.2e-19 71.1 10.2 1.6e-19 70.7 10.2 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|336255454|ref|YP_004598561.1| - 0.0015 18.0 0.6 0.0015 18.0 0.6 1.9 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lig_C PF18330.1 gi|336255455|ref|YP_004598562.1| - 3.8e-42 143.2 0.3 6e-42 142.6 0.3 1.3 1 0 0 1 1 1 1 Ligase Pab1020 C-terminal region RNA_ligase PF09414.10 gi|336255455|ref|YP_004598562.1| - 1.9e-14 54.3 0.0 3.3e-14 53.5 0.0 1.3 1 0 0 1 1 1 1 RNA ligase DNA_ligase_A_M PF01068.21 gi|336255455|ref|YP_004598562.1| - 0.0064 16.2 0.0 2.8 7.6 0.0 2.4 1 1 0 2 2 2 2 ATP dependent DNA ligase domain PIN_5 PF08745.11 gi|336255457|ref|YP_004598564.1| - 5.2e-81 271.0 0.5 5.9e-81 270.8 0.5 1.0 1 0 0 1 1 1 1 PINc domain ribonuclease CorA PF01544.18 gi|336255457|ref|YP_004598564.1| - 0.018 14.3 0.4 0.029 13.7 0.4 1.3 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein MEDS PF14417.6 gi|336255457|ref|YP_004598564.1| - 0.03 14.2 0.1 0.044 13.6 0.1 1.3 1 0 0 1 1 1 0 MEDS: MEthanogen/methylotroph, DcmR Sensory domain VAPB_antitox PF02697.14 gi|336255457|ref|YP_004598564.1| - 0.14 12.9 2.2 3.6 8.4 0.0 3.2 3 1 1 4 4 4 0 Putative antitoxin MFS_1 PF07690.16 gi|336255458|ref|YP_004598565.1| - 1.2e-44 152.7 47.8 6.7e-41 140.4 44.9 2.1 2 0 0 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|336255458|ref|YP_004598565.1| - 3.9e-06 26.0 34.9 0.00052 19.0 7.7 3.3 2 1 1 3 3 3 3 Sugar (and other) transporter LacY_symp PF01306.19 gi|336255458|ref|YP_004598565.1| - 1.7 7.4 11.7 0.0082 15.0 2.1 2.0 2 1 1 3 3 3 0 LacY proton/sugar symporter MFS_1_like PF12832.7 gi|336255458|ref|YP_004598565.1| - 4.2 6.1 18.4 0.99 8.2 0.2 3.2 2 1 0 3 3 3 0 MFS_1 like family EF1_GNE PF00736.19 gi|336255459|ref|YP_004598566.1| - 6e-19 68.0 0.0 6.5e-19 67.9 0.0 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain DUF3073 PF11273.8 gi|336255459|ref|YP_004598566.1| - 0.19 12.5 0.0 0.26 12.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3073) DUF1610 PF07754.11 gi|336255460|ref|YP_004598567.1| - 2.3e-07 30.7 10.6 8.9e-07 28.8 4.3 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF1610) C1_2 PF03107.16 gi|336255460|ref|YP_004598567.1| - 0.00041 20.6 11.1 0.019 15.2 0.7 2.2 1 1 1 2 2 2 2 C1 domain zf-Mss51 PF13824.6 gi|336255460|ref|YP_004598567.1| - 0.0058 16.7 11.3 0.62 10.2 2.4 2.8 1 1 1 2 2 2 2 Zinc-finger of mitochondrial splicing suppressor 51 zf-ACC PF17848.1 gi|336255460|ref|YP_004598567.1| - 0.0061 16.6 0.4 0.0061 16.6 0.4 3.8 3 1 1 4 4 4 1 Acetyl-coA carboxylase zinc finger domain Rhodanese_C PF12368.8 gi|336255460|ref|YP_004598567.1| - 0.007 16.7 9.1 0.0077 16.6 9.1 1.1 1 0 0 1 1 1 1 Rhodanase C-terminal DZR PF12773.7 gi|336255460|ref|YP_004598567.1| - 0.012 15.6 14.6 0.059 13.4 2.2 2.2 1 1 1 2 2 2 0 Double zinc ribbon OrfB_Zn_ribbon PF07282.11 gi|336255460|ref|YP_004598567.1| - 0.015 15.2 6.6 0.015 15.2 6.6 2.0 1 1 1 2 2 2 0 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.6 gi|336255460|ref|YP_004598567.1| - 0.017 14.5 14.9 2.9 7.4 0.1 3.8 3 1 0 3 3 3 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.13 gi|336255460|ref|YP_004598567.1| - 0.018 14.7 11.3 0.33 10.7 1.0 3.1 2 1 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-CHY PF05495.12 gi|336255460|ref|YP_004598567.1| - 0.024 15.1 11.0 0.076 13.5 7.2 2.0 1 1 1 2 2 2 0 CHY zinc finger C1_1 PF00130.22 gi|336255460|ref|YP_004598567.1| - 0.028 14.3 9.6 0.87 9.5 6.4 2.4 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) HscB_4_cys PF18256.1 gi|336255460|ref|YP_004598567.1| - 0.05 13.4 1.4 0.05 13.4 1.4 2.9 2 1 1 3 3 3 0 Co-chaperone HscB tetracysteine metal binding motif HypA PF01155.19 gi|336255460|ref|YP_004598567.1| - 0.05 13.6 11.6 0.095 12.7 1.0 2.0 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc-ribbons_6 PF07191.12 gi|336255460|ref|YP_004598567.1| - 0.072 13.1 11.6 0.73 9.9 11.6 2.0 1 1 0 1 1 1 0 zinc-ribbons Zn-ribbon_8 PF09723.10 gi|336255460|ref|YP_004598567.1| - 0.086 13.0 18.8 2.9 8.1 0.6 3.8 1 1 2 3 3 3 0 Zinc ribbon domain zf-MYND PF01753.18 gi|336255460|ref|YP_004598567.1| - 0.11 12.7 10.3 1.4 9.1 0.5 2.2 2 1 0 2 2 2 0 MYND finger zf_UBZ PF18439.1 gi|336255460|ref|YP_004598567.1| - 0.14 11.8 16.0 0.27 10.8 0.5 3.9 2 1 2 4 4 4 0 Ubiquitin-Binding Zinc Finger Zn_Tnp_IS91 PF14319.6 gi|336255460|ref|YP_004598567.1| - 0.17 12.0 9.8 0.29 11.2 9.8 1.5 1 1 0 1 1 1 0 Transposase zinc-binding domain NMDAR2_C PF10565.9 gi|336255460|ref|YP_004598567.1| - 0.17 10.7 6.0 0.18 10.6 6.0 1.0 1 0 0 1 1 1 0 N-methyl D-aspartate receptor 2B3 C-terminus zf-UBP PF02148.19 gi|336255460|ref|YP_004598567.1| - 0.17 12.2 1.2 0.17 12.2 1.2 2.4 2 1 0 2 2 2 0 Zn-finger in ubiquitin-hydrolases and other protein PolC_DP2 PF03833.13 gi|336255460|ref|YP_004598567.1| - 0.18 9.7 7.5 0.19 9.5 7.5 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 Rubredoxin_2 PF18073.1 gi|336255460|ref|YP_004598567.1| - 0.27 11.0 17.6 2 8.2 0.1 3.9 3 1 0 3 3 3 0 Rubredoxin metal binding domain Zn_ribbon_SprT PF17283.2 gi|336255460|ref|YP_004598567.1| - 0.39 10.7 18.2 8 6.5 0.2 4.0 3 1 0 3 3 3 0 SprT-like zinc ribbon domain zf-C2HC5 PF06221.13 gi|336255460|ref|YP_004598567.1| - 0.39 10.7 10.4 0.29 11.1 5.4 2.1 1 1 1 2 2 2 0 Putative zinc finger motif, C2HC5-type zf-C2H2_11 PF16622.5 gi|336255460|ref|YP_004598567.1| - 0.42 10.4 9.6 6.4 6.6 0.1 3.8 4 0 0 4 4 4 0 zinc-finger C2H2-type UPF0547 PF10571.9 gi|336255460|ref|YP_004598567.1| - 0.62 10.2 17.1 1.4 9.0 0.2 3.5 3 1 0 3 3 3 0 Uncharacterised protein family UPF0547 zinc_ribbon_2 PF13240.6 gi|336255460|ref|YP_004598567.1| - 0.64 9.8 16.4 2.4 8.0 4.3 3.8 2 2 0 2 2 2 0 zinc-ribbon domain zf-AN1 PF01428.16 gi|336255460|ref|YP_004598567.1| - 0.67 10.2 11.4 3.3 8.0 1.5 2.6 1 1 1 3 3 3 0 AN1-like Zinc finger Sgf11 PF08209.11 gi|336255460|ref|YP_004598567.1| - 0.7 9.5 16.3 0.34 10.5 1.4 3.9 1 1 3 4 4 4 0 Sgf11 (transcriptional regulation protein) NMD3 PF04981.13 gi|336255460|ref|YP_004598567.1| - 0.76 9.2 9.3 0.89 9.0 9.3 1.0 1 0 0 1 1 1 0 NMD3 family zf-UBR PF02207.20 gi|336255460|ref|YP_004598567.1| - 0.84 9.9 11.7 16 5.7 11.7 2.4 1 1 0 1 1 1 0 Putative zinc finger in N-recognin (UBR box) DUF2752 PF10825.8 gi|336255460|ref|YP_004598567.1| - 0.92 9.6 5.5 22 5.2 0.4 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF2752) YhfH PF14149.6 gi|336255460|ref|YP_004598567.1| - 1.3 9.1 16.2 25 5.0 0.1 3.4 1 1 2 3 3 3 0 YhfH-like protein zinc_ribbon_10 PF10058.9 gi|336255460|ref|YP_004598567.1| - 1.4 8.8 14.3 9.2 6.1 0.6 3.6 1 1 3 4 4 4 0 Predicted integral membrane zinc-ribbon metal-binding protein zf-C2H2 PF00096.26 gi|336255460|ref|YP_004598567.1| - 1.6 9.3 15.2 3.5 8.3 0.7 3.7 4 0 0 4 4 4 0 Zinc finger, C2H2 type DUF2387 PF09526.10 gi|336255460|ref|YP_004598567.1| - 1.7 8.8 11.0 2.4 8.4 0.2 2.4 1 1 1 2 2 2 0 Probable metal-binding protein (DUF2387) NRDD PF13597.6 gi|336255460|ref|YP_004598567.1| - 2 7.1 10.3 1.6 7.4 0.6 2.0 1 1 1 2 2 2 0 Anaerobic ribonucleoside-triphosphate reductase zf-HIT PF04438.16 gi|336255460|ref|YP_004598567.1| - 2.2 8.2 17.7 6.8 6.7 3.0 3.5 1 1 2 3 3 3 0 HIT zinc finger zf-C2H2_6 PF13912.6 gi|336255460|ref|YP_004598567.1| - 2.5 8.2 7.7 5.5 7.1 0.1 3.2 3 0 0 3 3 3 0 C2H2-type zinc finger A2L_zn_ribbon PF08792.10 gi|336255460|ref|YP_004598567.1| - 5.2 6.9 15.2 4.9 7.0 4.0 3.8 1 1 2 3 3 3 0 A2L zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|336255460|ref|YP_004598567.1| - 7.4 6.6 20.9 21 5.2 4.7 3.6 1 1 1 2 2 2 0 Transposase zinc-ribbon domain DUF1451 PF07295.11 gi|336255460|ref|YP_004598567.1| - 7.7 6.5 8.9 11 6.0 6.0 2.0 1 1 1 2 2 2 0 Zinc-ribbon containing domain Anti-TRAP PF15777.5 gi|336255460|ref|YP_004598567.1| - 9.8 6.2 12.7 6 6.9 6.1 2.5 1 1 1 2 2 2 0 Tryptophan RNA-binding attenuator protein inhibitory protein Nre_N PF04894.12 gi|336255461|ref|YP_004598568.1| - 2.3e-95 319.5 0.0 2.8e-95 319.2 0.0 1.1 1 0 0 1 1 1 1 Archaeal Nre, N-terminal Nre_C PF04895.12 gi|336255461|ref|YP_004598568.1| - 7.2e-41 138.5 0.1 1.3e-40 137.7 0.1 1.4 1 0 0 1 1 1 1 Archaeal Nre, C-terminal CSD PF00313.22 gi|336255462|ref|YP_004598569.1| - 6.8e-20 70.7 0.2 7.4e-20 70.6 0.2 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain OB_RNB PF08206.11 gi|336255462|ref|YP_004598569.1| - 0.034 13.8 3.0 0.05 13.3 3.0 1.3 1 0 0 1 1 1 0 Ribonuclease B OB domain S1-like PF14444.6 gi|336255462|ref|YP_004598569.1| - 0.12 12.3 1.1 0.16 11.9 1.1 1.5 1 1 0 1 1 1 0 S1-like Na_H_antiporter PF03553.14 gi|336255464|ref|YP_004598571.1| - 1.6e-62 211.5 37.4 1.4e-55 188.7 18.0 2.1 1 1 1 2 2 2 2 Na+/H+ antiporter family Phage_holin_3_3 PF16083.5 gi|336255464|ref|YP_004598571.1| - 0.15 12.2 0.1 0.15 12.2 0.1 5.0 3 1 1 4 4 4 0 LydA holin phage, holin superfamily III DUF302 PF03625.14 gi|336255465|ref|YP_004598572.1| - 2.6e-17 62.4 0.0 4.4e-17 61.7 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF302 CPBP PF02517.16 gi|336255466|ref|YP_004598573.1| - 1.5e-06 28.5 0.4 3.3e-06 27.4 0.4 1.8 1 1 0 1 1 1 1 CPBP intramembrane metalloprotease Virul_fac_BrkB PF03631.15 gi|336255468|ref|YP_004598575.1| - 0.0034 17.1 11.2 0.0083 15.8 11.3 1.6 1 1 0 1 1 1 1 Virulence factor BrkB YdjM PF04307.14 gi|336255469|ref|YP_004598576.1| - 3.8e-11 42.6 4.2 3.8e-10 39.3 4.2 2.0 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase Zn_dep_PLPC PF00882.18 gi|336255469|ref|YP_004598576.1| - 0.14 12.2 0.4 0.32 11.0 0.4 1.5 1 1 0 1 1 1 0 Zinc dependent phospholipase C PQQ_2 PF13360.6 gi|336255470|ref|YP_004598577.1| - 5.8e-33 114.4 15.1 5.3e-20 72.0 5.0 4.0 1 1 3 4 4 4 4 PQQ-like domain PQQ PF01011.21 gi|336255470|ref|YP_004598577.1| - 1.3e-23 81.7 9.5 0.00073 19.4 0.1 7.6 7 1 0 7 7 7 7 PQQ enzyme repeat PQQ_3 PF13570.6 gi|336255470|ref|YP_004598577.1| - 3.3e-15 56.0 26.3 3.1e-05 24.3 0.1 7.9 7 1 0 7 7 7 6 PQQ-like domain CinA PF02464.17 gi|336255471|ref|YP_004598578.1| - 1e-55 187.6 1.6 1.3e-55 187.3 1.6 1.0 1 0 0 1 1 1 1 Competence-damaged protein Sensor PF13796.6 gi|336255472|ref|YP_004598579.1| - 4.4e-33 114.6 21.4 5.3e-33 114.4 21.4 1.1 1 0 0 1 1 1 1 Putative sensor Aminotran_1_2 PF00155.21 gi|336255473|ref|YP_004598580.1| - 3e-58 197.8 0.0 3.5e-58 197.5 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|336255473|ref|YP_004598580.1| - 5.5e-08 32.2 0.0 1.1e-07 31.1 0.0 1.4 1 1 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.21 gi|336255473|ref|YP_004598580.1| - 7.7e-07 28.7 0.0 1.2e-06 28.1 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|336255473|ref|YP_004598580.1| - 8.4e-06 25.3 0.0 1.4e-05 24.6 0.0 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Alliinase_C PF04864.13 gi|336255473|ref|YP_004598580.1| - 5.6e-05 22.2 0.0 8.1e-05 21.7 0.0 1.2 1 0 0 1 1 1 1 Allinase Cys_Met_Meta_PP PF01053.20 gi|336255473|ref|YP_004598580.1| - 0.00041 19.0 0.0 0.00051 18.7 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_MocR PF12897.7 gi|336255473|ref|YP_004598580.1| - 0.0023 16.8 0.4 0.049 12.4 0.2 2.4 2 1 0 2 2 2 1 Alanine-glyoxylate amino-transferase Aminotran_3 PF00202.21 gi|336255473|ref|YP_004598580.1| - 0.015 14.0 0.0 0.06 12.0 0.0 1.8 2 0 0 2 2 2 0 Aminotransferase class-III PALP PF00291.25 gi|336255473|ref|YP_004598580.1| - 0.076 12.4 0.3 11 5.4 0.0 2.4 1 1 1 2 2 2 0 Pyridoxal-phosphate dependent enzyme HRDC PF00570.23 gi|336255473|ref|YP_004598580.1| - 0.083 12.9 0.1 4.8 7.3 0.0 3.1 3 0 0 3 3 3 0 HRDC domain ArsA_ATPase PF02374.15 gi|336255474|ref|YP_004598581.1| - 3.9e-78 262.7 0.0 3.1e-51 174.4 0.0 2.6 2 1 0 2 2 2 2 Anion-transporting ATPase CbiA PF01656.23 gi|336255474|ref|YP_004598581.1| - 2e-07 31.1 0.0 3.7e-07 30.3 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|336255474|ref|YP_004598581.1| - 0.0001 22.2 0.0 0.00018 21.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain ParA PF10609.9 gi|336255474|ref|YP_004598581.1| - 0.003 17.1 1.0 0.026 14.0 0.2 2.1 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase CBP_BcsQ PF06564.12 gi|336255474|ref|YP_004598581.1| - 0.017 14.6 0.0 0.029 13.9 0.0 1.3 1 0 0 1 1 1 0 Cellulose biosynthesis protein BcsQ AAA_25 PF13481.6 gi|336255474|ref|YP_004598581.1| - 0.029 13.9 1.2 0.15 11.6 0.2 2.4 2 0 0 2 2 2 0 AAA domain PhoH PF02562.16 gi|336255474|ref|YP_004598581.1| - 0.11 12.0 0.0 0.19 11.2 0.0 1.3 1 0 0 1 1 1 0 PhoH-like protein Fer4_NifH PF00142.18 gi|336255474|ref|YP_004598581.1| - 0.13 11.7 0.0 0.22 10.9 0.0 1.4 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family SRP54 PF00448.22 gi|336255474|ref|YP_004598581.1| - 0.14 11.8 0.1 0.62 9.7 0.2 1.9 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain Zeta_toxin PF06414.12 gi|336255474|ref|YP_004598581.1| - 0.15 11.3 0.0 0.27 10.5 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin Usp PF00582.26 gi|336255475|ref|YP_004598582.1| - 4.6e-21 75.8 4.0 5.2e-21 75.6 4.0 1.0 1 0 0 1 1 1 1 Universal stress protein family Ribosomal_L14 PF00238.19 gi|336255475|ref|YP_004598582.1| - 0.056 13.5 0.1 0.084 13.0 0.1 1.2 1 0 0 1 1 1 0 Ribosomal protein L14p/L23e MFS_1 PF07690.16 gi|336255476|ref|YP_004598583.1| - 6e-38 130.7 54.7 6.9e-34 117.3 43.3 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Tautomerase PF01361.21 gi|336255477|ref|YP_004598584.1| - 5.9e-07 29.3 0.0 0.024 14.6 0.0 2.1 2 0 0 2 2 2 2 Tautomerase enzyme Tautomerase_2 PF14552.6 gi|336255477|ref|YP_004598584.1| - 0.00098 19.2 0.0 0.018 15.1 0.0 2.0 1 1 1 2 2 2 1 Tautomerase enzyme Tautomerase_3 PF14832.6 gi|336255477|ref|YP_004598584.1| - 0.029 14.6 0.0 0.074 13.3 0.0 1.6 1 1 0 2 2 2 0 Putative oxalocrotonate tautomerase enzyme MatE PF01554.18 gi|336255478|ref|YP_004598585.1| - 3.9e-58 195.7 32.2 1.5e-32 112.5 12.7 2.4 2 0 0 2 2 2 2 MatE Polysacc_synt_C PF14667.6 gi|336255478|ref|YP_004598585.1| - 3.6e-06 27.1 20.8 0.00013 22.0 8.6 5.2 4 3 0 4 4 4 2 Polysaccharide biosynthesis C-terminal domain MurJ PF03023.14 gi|336255478|ref|YP_004598585.1| - 1.6e-05 23.7 24.0 0.0045 15.7 24.0 3.3 1 1 0 1 1 1 1 Lipid II flippase MurJ DUF4191 PF13829.6 gi|336255478|ref|YP_004598585.1| - 9.3 5.5 13.0 0.075 12.4 1.3 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF4191) Na_sulph_symp PF00939.19 gi|336255479|ref|YP_004598586.1| - 1.4e-87 294.7 33.5 1.8e-87 294.4 33.5 1.0 1 0 0 1 1 1 1 Sodium:sulfate symporter transmembrane region CitMHS PF03600.16 gi|336255479|ref|YP_004598586.1| - 4e-41 141.2 33.7 4e-41 141.2 33.7 2.1 1 1 1 2 2 2 1 Citrate transporter NhaB PF06450.12 gi|336255479|ref|YP_004598586.1| - 4.8e-05 22.4 2.1 4.8e-05 22.4 2.1 1.9 2 1 0 2 2 2 1 Bacterial Na+/H+ antiporter B (NhaB) DUF5337 PF17272.2 gi|336255479|ref|YP_004598586.1| - 0.1 12.4 0.0 0.1 12.4 0.0 3.9 4 0 0 4 4 4 0 Family of unknown function (DUF5337) HTH_IclR PF09339.10 gi|336255480|ref|YP_004598587.1| - 2.7e-06 27.1 0.4 4.9e-06 26.3 0.4 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain Rrf2 PF02082.20 gi|336255480|ref|YP_004598587.1| - 6.4e-06 26.4 0.1 8.5e-06 26.0 0.1 1.1 1 0 0 1 1 1 1 Transcriptional regulator MarR PF01047.22 gi|336255480|ref|YP_004598587.1| - 6.6e-06 26.0 0.1 9.6e-06 25.4 0.1 1.2 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|336255480|ref|YP_004598587.1| - 1.9e-05 24.1 0.0 2.9e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|336255480|ref|YP_004598587.1| - 2.6e-05 24.0 0.3 3.3e-05 23.7 0.3 1.2 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|336255480|ref|YP_004598587.1| - 0.00047 20.1 0.1 0.00056 19.8 0.1 1.2 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_11 PF08279.12 gi|336255480|ref|YP_004598587.1| - 0.00098 19.0 0.0 0.0013 18.6 0.0 1.2 1 0 0 1 1 1 1 HTH domain DUF802 PF05650.11 gi|336255480|ref|YP_004598587.1| - 0.005 17.3 1.6 0.0084 16.5 1.6 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF802) HTH_DeoR PF08220.12 gi|336255480|ref|YP_004598587.1| - 0.0053 16.5 0.2 0.011 15.5 0.1 1.6 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain Fe_dep_repress PF01325.19 gi|336255480|ref|YP_004598587.1| - 0.0099 16.1 0.0 0.023 14.9 0.0 1.6 1 1 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_AsnC-type PF13404.6 gi|336255480|ref|YP_004598587.1| - 0.012 15.4 0.3 0.022 14.6 0.3 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_20 PF12840.7 gi|336255480|ref|YP_004598587.1| - 0.015 15.3 0.1 0.021 14.9 0.1 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_34 PF13601.6 gi|336255480|ref|YP_004598587.1| - 0.019 15.1 0.0 0.04 14.1 0.0 1.6 1 1 0 1 1 1 0 Winged helix DNA-binding domain GntR PF00392.21 gi|336255480|ref|YP_004598587.1| - 0.051 13.2 0.0 0.076 12.7 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_38 PF13936.6 gi|336255480|ref|YP_004598587.1| - 0.063 13.1 0.1 0.12 12.2 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_5 PF01022.20 gi|336255480|ref|YP_004598587.1| - 0.13 12.2 0.0 0.17 11.8 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family adh_short PF00106.25 gi|336255481|ref|YP_004598588.1| - 9.2e-53 178.6 0.0 1.1e-52 178.3 0.0 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|336255481|ref|YP_004598588.1| - 2.6e-44 151.5 0.0 3.8e-44 151.0 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|336255481|ref|YP_004598588.1| - 1.1e-13 51.6 0.0 1.4e-13 51.2 0.0 1.2 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.6 gi|336255481|ref|YP_004598588.1| - 2.2e-12 47.3 0.2 3.9e-12 46.4 0.2 1.5 1 1 0 1 1 1 1 NAD(P)H-binding Epimerase PF01370.21 gi|336255481|ref|YP_004598588.1| - 4.3e-08 32.9 0.0 9.5e-08 31.8 0.0 1.6 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 gi|336255481|ref|YP_004598588.1| - 3.4e-06 26.4 0.1 7.3e-06 25.3 0.1 1.5 1 1 0 1 1 1 1 RmlD substrate binding domain NmrA PF05368.13 gi|336255481|ref|YP_004598588.1| - 0.00052 19.6 0.7 0.00096 18.8 0.1 1.7 2 0 0 2 2 2 1 NmrA-like family DUF1776 PF08643.10 gi|336255481|ref|YP_004598588.1| - 0.001 18.5 0.0 0.0015 18.0 0.0 1.2 1 0 0 1 1 1 1 Fungal family of unknown function (DUF1776) TrkA_N PF02254.18 gi|336255481|ref|YP_004598588.1| - 0.0042 17.3 0.3 0.01 16.1 0.1 1.7 2 0 0 2 2 2 1 TrkA-N domain DUF5114 PF17141.4 gi|336255481|ref|YP_004598588.1| - 0.069 13.7 0.5 0.55 10.8 0.0 2.5 3 0 0 3 3 2 0 Domain of unknown function (DUF5114) Eno-Rase_NADH_b PF12242.8 gi|336255481|ref|YP_004598588.1| - 0.074 12.8 0.0 0.16 11.7 0.0 1.5 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase 2-Hacid_dh_C PF02826.19 gi|336255481|ref|YP_004598588.1| - 0.13 11.6 0.0 0.52 9.6 0.0 1.9 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain MatE PF01554.18 gi|336255482|ref|YP_004598589.1| - 9.3e-44 148.9 26.0 1.1e-24 87.0 7.5 2.6 2 1 0 2 2 2 2 MatE Polysacc_synt_C PF14667.6 gi|336255482|ref|YP_004598589.1| - 0.00018 21.6 7.2 0.00018 21.6 7.2 3.7 3 1 1 4 4 4 2 Polysaccharide biosynthesis C-terminal domain Endonuclease_5 PF04493.14 gi|336255483|ref|YP_004598590.1| - 4.3e-56 189.7 0.0 5.8e-56 189.3 0.0 1.1 1 0 0 1 1 1 1 Endonuclease V DUF99 PF01949.16 gi|336255483|ref|YP_004598590.1| - 0.04 13.3 0.2 0.3 10.5 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function DUF99 Rhomboid PF01694.22 gi|336255484|ref|YP_004598591.1| - 1.9e-26 92.9 16.2 3e-26 92.2 16.2 1.3 1 0 0 1 1 1 1 Rhomboid family zf-AN1 PF01428.16 gi|336255484|ref|YP_004598591.1| - 2e-12 47.0 8.2 2.9e-12 46.5 8.2 1.2 1 0 0 1 1 1 1 AN1-like Zinc finger DUF1751 PF08551.10 gi|336255484|ref|YP_004598591.1| - 4.9e-05 23.8 0.1 0.0001 22.8 0.1 1.4 1 0 0 1 1 1 1 Eukaryotic integral membrane protein (DUF1751) FYVE PF01363.21 gi|336255484|ref|YP_004598591.1| - 0.042 14.0 1.0 0.058 13.5 1.0 1.2 1 0 0 1 1 1 0 FYVE zinc finger zf-HIT PF04438.16 gi|336255484|ref|YP_004598591.1| - 0.23 11.4 4.3 0.32 10.9 4.3 1.2 1 0 0 1 1 1 0 HIT zinc finger DNA_pol_B_thumb PF14791.6 gi|336255486|ref|YP_004598593.1| - 9.1e-24 83.4 0.0 2.8e-23 81.8 0.0 1.9 1 0 0 1 1 1 1 DNA polymerase beta thumb HHH_8 PF14716.6 gi|336255486|ref|YP_004598593.1| - 2.5e-22 79.0 5.4 2.2e-17 63.2 0.2 3.8 2 1 1 3 3 3 3 Helix-hairpin-helix domain HHH_5 PF14520.6 gi|336255486|ref|YP_004598593.1| - 3.6e-20 72.3 4.9 1.1e-13 51.6 0.2 3.2 2 1 2 4 4 3 3 Helix-hairpin-helix domain HHH PF00633.23 gi|336255486|ref|YP_004598593.1| - 3.2e-08 33.0 1.3 0.0019 18.0 0.1 3.5 3 0 0 3 3 3 2 Helix-hairpin-helix motif PHP PF02811.19 gi|336255486|ref|YP_004598593.1| - 4.2e-08 33.7 0.0 7.3e-08 32.9 0.0 1.5 1 0 0 1 1 1 1 PHP domain HHH_2 PF12826.7 gi|336255486|ref|YP_004598593.1| - 7.1e-08 32.4 2.8 0.0038 17.3 0.0 3.3 3 0 0 3 3 3 2 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.9 gi|336255486|ref|YP_004598593.1| - 1.7e-07 31.0 0.4 6.1e-06 26.0 0.0 3.2 4 0 0 4 4 4 1 Fingers domain of DNA polymerase lambda DNA_pol_B_palm PF14792.6 gi|336255486|ref|YP_004598593.1| - 3.4e-05 24.0 0.2 9.7e-05 22.6 0.0 1.8 2 0 0 2 2 1 1 DNA polymerase beta palm HHH_3 PF12836.7 gi|336255486|ref|YP_004598593.1| - 3.4e-05 24.0 0.1 0.16 12.3 0.0 3.6 3 1 0 3 3 3 1 Helix-hairpin-helix motif IMS_HHH PF11798.8 gi|336255486|ref|YP_004598593.1| - 0.0018 18.5 0.5 4.1 7.9 0.1 3.3 4 0 0 4 4 3 2 IMS family HHH motif Cdd1 PF11731.8 gi|336255486|ref|YP_004598593.1| - 0.002 18.3 0.1 0.091 13.0 0.0 2.5 1 1 1 2 2 2 1 Pathogenicity locus 5_3_exonuc PF01367.20 gi|336255486|ref|YP_004598593.1| - 0.015 15.8 1.0 0.33 11.6 0.1 2.9 1 1 1 2 2 2 0 5'-3' exonuclease, C-terminal SAM fold Ribosomal_S13 PF00416.22 gi|336255486|ref|YP_004598593.1| - 0.018 15.4 2.5 3.2 8.2 0.0 4.1 3 1 2 5 5 5 0 Ribosomal protein S13/S18 RNA_pol_A_CTD PF03118.15 gi|336255486|ref|YP_004598593.1| - 0.17 11.7 0.1 0.41 10.4 0.1 1.7 1 0 0 1 1 1 0 Bacterial RNA polymerase, alpha chain C terminal domain Mut7-C PF01927.16 gi|336255487|ref|YP_004598594.1| - 2.6e-37 128.1 0.1 2.9e-37 128.0 0.1 1.0 1 0 0 1 1 1 1 Mut7-C RNAse domain DUF5615 PF18480.1 gi|336255487|ref|YP_004598594.1| - 0.0058 16.3 0.0 0.0096 15.7 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF5615) DUF4379 PF14311.6 gi|336255487|ref|YP_004598594.1| - 0.0089 16.4 0.9 0.015 15.7 0.9 1.4 1 0 0 1 1 1 1 Probable Zinc-ribbon domain DZR PF12773.7 gi|336255487|ref|YP_004598594.1| - 0.012 15.6 0.2 0.028 14.5 0.2 1.5 1 0 0 1 1 1 0 Double zinc ribbon RNA_POL_M_15KD PF02150.16 gi|336255487|ref|YP_004598594.1| - 0.11 12.4 0.3 13 5.7 0.0 2.4 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit PHP_C PF13263.6 gi|336255489|ref|YP_004598596.1| - 3.1e-16 58.9 0.1 6.1e-16 57.9 0.1 1.5 1 0 0 1 1 1 1 PHP-associated CTP-dep_RFKase PF01982.16 gi|336255489|ref|YP_004598596.1| - 0.21 11.7 0.0 0.36 10.9 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function DUF120 zf-C2H2 PF00096.26 gi|336255490|ref|YP_004598597.1| - 0.003 17.9 0.0 3.2 8.4 0.0 2.3 2 0 0 2 2 2 2 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 gi|336255490|ref|YP_004598597.1| - 0.1 13.5 0.1 16 6.7 0.0 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger RepB_primase PF16793.5 gi|336255490|ref|YP_004598597.1| - 0.12 12.5 0.0 0.14 12.3 0.0 1.1 1 0 0 1 1 1 0 RepB DNA-primase from phage plasmid Spt5-NGN PF03439.13 gi|336255491|ref|YP_004598598.1| - 1.1e-23 82.9 0.1 1.8e-23 82.3 0.1 1.3 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.29 gi|336255491|ref|YP_004598598.1| - 6.6e-08 32.3 0.8 1.3e-07 31.3 0.3 1.8 2 0 0 2 2 2 1 KOW motif Glyco_hydro_65C PF03633.15 gi|336255491|ref|YP_004598598.1| - 0.097 12.6 0.2 0.19 11.7 0.2 1.5 1 0 0 1 1 1 0 Glycosyl hydrolase family 65, C-terminal domain DbpA PF03880.15 gi|336255491|ref|YP_004598598.1| - 0.13 12.2 0.1 0.31 11.1 0.1 1.6 1 0 0 1 1 1 0 DbpA RNA binding domain SecE PF00584.20 gi|336255492|ref|YP_004598599.1| - 5.9e-05 22.9 0.3 6.8e-05 22.7 0.3 1.1 1 0 0 1 1 1 1 SecE/Sec61-gamma subunits of protein translocation complex Bac_luciferase PF00296.20 gi|336255494|ref|YP_004598601.1| - 3.3e-52 177.9 1.6 4.6e-52 177.4 1.6 1.1 1 0 0 1 1 1 1 Luciferase-like monooxygenase Trypsin_2 PF13365.6 gi|336255495|ref|YP_004598602.1| - 1.3e-32 113.7 1.8 2.9e-32 112.6 1.8 1.6 1 0 0 1 1 1 1 Trypsin-like peptidase domain PDZ_2 PF13180.6 gi|336255495|ref|YP_004598602.1| - 1.7e-18 66.7 0.1 3.8e-18 65.6 0.1 1.6 1 0 0 1 1 1 1 PDZ domain Trypsin PF00089.26 gi|336255495|ref|YP_004598602.1| - 8.3e-15 55.2 0.2 1.4e-14 54.4 0.2 1.3 1 0 0 1 1 1 1 Trypsin PDZ_6 PF17820.1 gi|336255495|ref|YP_004598602.1| - 7.9e-06 25.6 2.2 7.4e-05 22.5 2.2 2.4 1 1 0 1 1 1 1 PDZ domain PDZ PF00595.24 gi|336255495|ref|YP_004598602.1| - 4.6e-05 23.7 0.1 0.00015 22.0 0.1 1.9 1 1 0 1 1 1 1 PDZ domain Peptidase_S46 PF10459.9 gi|336255495|ref|YP_004598602.1| - 0.00044 19.1 0.4 0.00044 19.1 0.4 1.5 2 0 0 2 2 2 1 Peptidase S46 Tricorn_PDZ PF14685.6 gi|336255495|ref|YP_004598602.1| - 0.0008 19.3 0.2 0.0052 16.7 0.1 2.3 2 0 0 2 2 2 1 Tricorn protease PDZ domain Peptidase_S7 PF00949.21 gi|336255495|ref|YP_004598602.1| - 0.088 12.6 0.2 0.16 11.8 0.2 1.4 1 0 0 1 1 1 0 Peptidase S7, Flavivirus NS3 serine protease TAT_signal PF10518.9 gi|336255495|ref|YP_004598602.1| - 0.3 11.0 3.8 0.69 9.8 3.8 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence MR_MLE_C PF13378.6 gi|336255496|ref|YP_004598603.1| - 8.2e-57 192.3 0.8 1.1e-56 191.8 0.8 1.2 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|336255496|ref|YP_004598603.1| - 3e-14 53.2 0.0 6.1e-14 52.2 0.0 1.5 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Amidohydro_2 PF04909.14 gi|336255496|ref|YP_004598603.1| - 0.067 13.0 1.6 0.098 12.4 0.4 1.8 3 0 0 3 3 3 0 Amidohydrolase Glu_dehyd_C PF16912.5 gi|336255497|ref|YP_004598604.1| - 5.4e-99 329.9 0.0 7.3e-99 329.5 0.0 1.2 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus ADH_N PF08240.12 gi|336255497|ref|YP_004598604.1| - 9.2e-11 41.6 0.0 1.5e-10 40.9 0.0 1.4 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|336255497|ref|YP_004598604.1| - 0.00015 21.8 0.0 0.00025 21.1 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N_2 PF16884.5 gi|336255497|ref|YP_004598604.1| - 0.00021 21.1 0.1 0.00049 20.0 0.1 1.5 1 0 0 1 1 1 1 N-terminal domain of oxidoreductase Aldolase PF01081.19 gi|336255498|ref|YP_004598605.1| - 1.3e-45 155.2 1.1 1.5e-45 155.0 1.1 1.0 1 0 0 1 1 1 1 KDPG and KHG aldolase DHO_dh PF01180.21 gi|336255498|ref|YP_004598605.1| - 0.01 15.1 5.2 0.16 11.1 0.8 2.9 1 1 2 3 3 3 0 Dihydroorotate dehydrogenase PALB2_WD40 PF16756.5 gi|336255498|ref|YP_004598605.1| - 0.14 11.1 0.0 0.18 10.7 0.0 1.2 1 0 0 1 1 1 0 Partner and localizer of BRCA2 WD40 domain IMPDH PF00478.25 gi|336255498|ref|YP_004598605.1| - 0.18 10.8 8.3 0.041 12.9 2.0 2.4 2 1 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain Regulator_TrmB PF11495.8 gi|336255499|ref|YP_004598606.1| - 1.7e-56 191.0 0.1 2.3e-56 190.6 0.0 1.1 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.19 gi|336255499|ref|YP_004598606.1| - 1.2e-16 60.3 0.3 4e-16 58.7 0.0 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|336255499|ref|YP_004598606.1| - 0.0062 16.9 0.0 0.051 13.9 0.0 2.2 2 0 0 2 2 2 1 Transcriptional regulator MarR_2 PF12802.7 gi|336255499|ref|YP_004598606.1| - 0.0087 15.9 0.1 0.047 13.6 0.0 2.2 2 0 0 2 2 2 1 MarR family HTH_11 PF08279.12 gi|336255499|ref|YP_004598606.1| - 0.013 15.4 0.5 4.5 7.3 0.1 2.6 2 1 1 3 3 3 0 HTH domain HTH_IclR PF09339.10 gi|336255499|ref|YP_004598606.1| - 0.016 15.0 0.0 1.2 9.0 0.0 2.6 2 0 0 2 2 2 0 IclR helix-turn-helix domain MarR PF01047.22 gi|336255499|ref|YP_004598606.1| - 0.024 14.5 0.0 0.049 13.6 0.0 1.5 1 0 0 1 1 1 0 MarR family Glyco_hydro_15 PF00723.21 gi|336255500|ref|YP_004598607.1| - 0.0015 17.4 0.2 0.24 10.1 0.3 3.1 2 1 1 4 4 4 2 Glycosyl hydrolases family 15 Laminin_G_3 PF13385.6 gi|336255500|ref|YP_004598607.1| - 0.056 13.6 1.0 0.17 12.0 0.3 2.0 1 1 1 2 2 2 0 Concanavalin A-like lectin/glucanases superfamily HisKA PF00512.25 gi|336255500|ref|YP_004598607.1| - 3.3 7.8 5.2 3.9 7.6 0.5 2.8 3 0 0 3 3 3 0 His Kinase A (phospho-acceptor) domain Alpha-amylase PF00128.24 gi|336255501|ref|YP_004598608.1| - 2.6e-83 280.4 0.0 4.2e-83 279.7 0.0 1.3 1 0 0 1 1 1 1 Alpha amylase, catalytic domain Alpha-amylase_N PF02903.14 gi|336255501|ref|YP_004598608.1| - 3.1e-33 114.5 0.0 5.3e-33 113.7 0.0 1.4 1 0 0 1 1 1 1 Alpha amylase, N-terminal ig-like domain DUF3459 PF11941.8 gi|336255501|ref|YP_004598608.1| - 1.2e-06 28.8 0.5 3.5e-06 27.2 0.5 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF3459) Malt_amylase_C PF16657.5 gi|336255501|ref|YP_004598608.1| - 0.11 12.6 0.0 0.27 11.4 0.0 1.7 1 0 0 1 1 1 0 Maltogenic Amylase, C-terminal domain hDGE_amylase PF14701.6 gi|336255501|ref|YP_004598608.1| - 0.15 11.1 0.0 0.22 10.6 0.0 1.1 1 0 0 1 1 1 0 Glycogen debranching enzyme, glucanotransferase domain ABC_tran PF00005.27 gi|336255502|ref|YP_004598609.1| - 1.1e-31 110.1 0.0 1.9e-31 109.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 gi|336255502|ref|YP_004598609.1| - 1.7e-11 44.1 0.2 6.9e-11 42.2 0.1 2.2 2 0 0 2 2 1 1 TOBE domain OB_MalK PF17912.1 gi|336255502|ref|YP_004598609.1| - 1.2e-08 35.6 0.0 4.5e-08 33.8 0.0 2.1 1 0 0 1 1 1 1 MalK OB fold domain AAA_21 PF13304.6 gi|336255502|ref|YP_004598609.1| - 2.2e-06 27.7 0.0 0.027 14.3 0.1 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE PF03459.17 gi|336255502|ref|YP_004598609.1| - 4.1e-06 27.0 0.0 8.9e-06 25.9 0.0 1.6 1 0 0 1 1 1 1 TOBE domain AAA_16 PF13191.6 gi|336255502|ref|YP_004598609.1| - 0.00034 21.0 0.0 0.00053 20.4 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 gi|336255502|ref|YP_004598609.1| - 0.00044 19.8 0.2 0.0024 17.4 0.2 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|336255502|ref|YP_004598609.1| - 0.0022 18.3 0.2 0.004 17.4 0.2 1.5 1 1 0 1 1 1 1 AAA domain G-alpha PF00503.20 gi|336255502|ref|YP_004598609.1| - 0.0072 15.5 0.0 0.015 14.5 0.0 1.5 1 1 0 1 1 1 1 G-protein alpha subunit Rad17 PF03215.15 gi|336255502|ref|YP_004598609.1| - 0.012 15.6 0.0 0.017 15.0 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA PF00004.29 gi|336255502|ref|YP_004598609.1| - 0.018 15.5 0.0 0.044 14.2 0.0 1.7 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ATPase_2 PF01637.18 gi|336255502|ref|YP_004598609.1| - 0.022 14.7 0.0 0.088 12.7 0.0 2.0 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|336255502|ref|YP_004598609.1| - 0.027 14.5 0.0 0.072 13.1 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|336255502|ref|YP_004598609.1| - 0.028 14.1 0.0 0.054 13.2 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain RNA_helicase PF00910.22 gi|336255502|ref|YP_004598609.1| - 0.045 14.1 0.0 0.46 10.9 0.0 2.6 3 0 0 3 3 3 0 RNA helicase AAA_18 PF13238.6 gi|336255502|ref|YP_004598609.1| - 0.054 14.1 0.0 0.13 12.9 0.0 1.9 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|336255502|ref|YP_004598609.1| - 0.066 13.4 0.3 0.18 12.0 0.2 1.8 1 1 1 2 2 2 0 AAA domain Zeta_toxin PF06414.12 gi|336255502|ref|YP_004598609.1| - 0.07 12.4 0.1 0.2 10.9 0.0 1.8 2 0 0 2 2 2 0 Zeta toxin AAA_25 PF13481.6 gi|336255502|ref|YP_004598609.1| - 0.071 12.7 1.7 0.59 9.7 0.3 2.9 2 1 1 3 3 3 0 AAA domain AAA_30 PF13604.6 gi|336255502|ref|YP_004598609.1| - 0.071 12.8 0.0 0.14 11.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|336255502|ref|YP_004598609.1| - 0.093 13.2 0.0 0.2 12.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|336255502|ref|YP_004598609.1| - 0.1 12.5 0.0 0.21 11.5 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase SRP54 PF00448.22 gi|336255502|ref|YP_004598609.1| - 0.17 11.5 0.2 0.86 9.2 0.0 1.9 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain SBP_bac_8 PF13416.6 gi|336255504|ref|YP_004598611.1| - 2.4e-39 135.9 0.9 3e-39 135.6 0.9 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|336255504|ref|YP_004598611.1| - 8.5e-26 91.6 4.2 1.1e-25 91.3 4.2 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein ApoLp-III PF07464.11 gi|336255504|ref|YP_004598611.1| - 0.0017 18.5 0.2 0.043 13.9 0.0 2.2 2 0 0 2 2 2 1 Apolipophorin-III precursor (apoLp-III) TAT_signal PF10518.9 gi|336255504|ref|YP_004598611.1| - 0.0034 17.2 0.1 0.0059 16.4 0.1 1.3 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence SBP_bac_6 PF13343.6 gi|336255504|ref|YP_004598611.1| - 0.013 14.9 0.1 0.066 12.6 0.1 2.1 2 0 0 2 2 2 0 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.22 gi|336255505|ref|YP_004598612.1| - 3.3e-14 53.0 20.2 3.3e-14 53.0 20.2 2.5 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|336255506|ref|YP_004598613.1| - 1.5e-14 54.2 11.9 1.5e-14 54.2 11.9 2.5 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component MR_MLE_C PF13378.6 gi|336255507|ref|YP_004598614.1| - 4.2e-57 193.2 0.9 5.7e-57 192.8 0.9 1.2 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|336255507|ref|YP_004598614.1| - 3.9e-13 49.7 0.0 7.8e-13 48.7 0.0 1.5 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain tRNA_SAD PF07973.14 gi|336255508|ref|YP_004598615.1| - 3.5e-10 39.8 0.2 6.7e-10 38.9 0.2 1.5 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_2c PF01411.19 gi|336255508|ref|YP_004598615.1| - 3.4e-08 32.5 0.0 4.6e-08 32.0 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) HTH_31 PF13560.6 gi|336255509|ref|YP_004598616.1| - 0.00024 21.4 1.1 0.00048 20.4 1.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|336255509|ref|YP_004598616.1| - 0.00027 21.0 0.1 0.0004 20.4 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_25 PF13413.6 gi|336255509|ref|YP_004598616.1| - 0.003 17.4 0.4 0.0054 16.6 0.4 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Zn-ribbon_8 PF09723.10 gi|336255509|ref|YP_004598616.1| - 0.0086 16.2 1.0 0.016 15.3 1.0 1.4 1 0 0 1 1 1 1 Zinc ribbon domain HTH_19 PF12844.7 gi|336255509|ref|YP_004598616.1| - 0.015 15.3 0.0 0.027 14.5 0.0 1.5 1 1 0 1 1 1 0 Helix-turn-helix domain PhnA_Zn_Ribbon PF08274.12 gi|336255509|ref|YP_004598616.1| - 0.03 14.3 1.5 0.077 13.0 1.5 1.6 1 1 0 1 1 1 0 PhnA Zinc-Ribbon DUF4685 PF15737.5 gi|336255509|ref|YP_004598616.1| - 0.076 13.5 0.9 0.11 12.9 0.9 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4685) DUF1451 PF07295.11 gi|336255509|ref|YP_004598616.1| - 0.28 11.2 1.3 0.31 11.1 0.4 1.5 2 0 0 2 2 2 0 Zinc-ribbon containing domain DUF420 PF04238.12 gi|336255510|ref|YP_004598617.1| - 5.1e-37 127.1 5.8 5.1e-37 127.1 5.8 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF420) DUF2306 PF10067.9 gi|336255510|ref|YP_004598617.1| - 0.00015 22.0 2.3 0.00015 22.0 2.3 2.4 2 1 0 2 2 2 1 Predicted membrane protein (DUF2306) DUF3413 PF11893.8 gi|336255510|ref|YP_004598617.1| - 0.014 14.6 6.8 0.26 10.4 2.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF3413) DUF1240 PF06836.12 gi|336255510|ref|YP_004598617.1| - 0.066 13.7 0.8 0.066 13.7 0.8 2.1 3 0 0 3 3 3 0 Protein of unknown function (DUF1240) DUF5389 PF17364.2 gi|336255510|ref|YP_004598617.1| - 0.12 12.4 2.1 0.43 10.7 0.6 2.2 2 0 0 2 2 2 0 Family of unknown function (DUF5389) DUF3397 PF11877.8 gi|336255510|ref|YP_004598617.1| - 0.18 12.0 13.1 0.7 10.1 1.0 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF3397) Amastin PF07344.11 gi|336255510|ref|YP_004598617.1| - 1.9 8.3 7.1 0.16 11.8 0.5 2.0 2 0 0 2 2 2 0 Amastin surface glycoprotein Tad PF13400.6 gi|336255511|ref|YP_004598618.1| - 0.033 14.5 2.0 0.038 14.3 2.0 1.1 1 0 0 1 1 1 0 Putative Flp pilus-assembly TadE/G-like FixH PF05751.11 gi|336255511|ref|YP_004598618.1| - 0.31 11.0 1.3 0.31 11.1 1.3 1.0 1 0 0 1 1 1 0 FixH OppC_N PF12911.7 gi|336255511|ref|YP_004598618.1| - 0.45 10.5 5.0 0.57 10.2 5.0 1.2 1 0 0 1 1 1 0 N-terminal TM domain of oligopeptide transport permease C GATase_6 PF13522.6 gi|336255512|ref|YP_004598619.1| - 3.4e-19 69.4 0.0 6.9e-19 68.4 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|336255512|ref|YP_004598619.1| - 1e-18 67.4 0.0 2.6e-18 66.1 0.0 1.7 1 0 0 1 1 1 1 Glutamine amidotransferase domain Pribosyltran PF00156.27 gi|336255512|ref|YP_004598619.1| - 8.4e-09 35.1 0.1 1.6e-08 34.2 0.1 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain GATase_4 PF13230.6 gi|336255512|ref|YP_004598619.1| - 0.0019 17.2 0.0 0.0039 16.1 0.0 1.5 2 0 0 2 2 2 1 Glutamine amidotransferases class-II Na_sulph_symp PF00939.19 gi|336255513|ref|YP_004598620.1| - 2e-33 116.2 16.3 2.7e-33 115.8 16.3 1.0 1 0 0 1 1 1 1 Sodium:sulfate symporter transmembrane region CitMHS PF03600.16 gi|336255513|ref|YP_004598620.1| - 1.7e-17 63.6 20.7 1.7e-17 63.6 20.7 1.8 2 0 0 2 2 2 1 Citrate transporter MutS_V PF00488.21 gi|336255514|ref|YP_004598621.1| - 1.6e-07 31.6 0.0 2.8e-07 30.8 0.0 1.3 1 0 0 1 1 1 1 MutS domain V AAA_21 PF13304.6 gi|336255514|ref|YP_004598621.1| - 0.0067 16.3 0.1 0.029 14.2 0.0 2.1 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_28 PF13521.6 gi|336255514|ref|YP_004598621.1| - 0.015 15.5 1.2 0.045 14.0 0.0 2.4 2 1 1 3 3 3 0 AAA domain HHH_5 PF14520.6 gi|336255514|ref|YP_004598621.1| - 0.19 12.4 1.7 2.7 8.7 0.1 3.0 2 0 0 2 2 2 0 Helix-hairpin-helix domain AAA_14 PF13173.6 gi|336255514|ref|YP_004598621.1| - 0.19 11.8 0.0 0.34 10.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|336255514|ref|YP_004598621.1| - 0.28 11.6 0.0 0.52 10.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain HAD_2 PF13419.6 gi|336255516|ref|YP_004598623.1| - 2.7e-14 53.6 0.0 3.3e-14 53.4 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|336255516|ref|YP_004598623.1| - 5.3e-08 32.8 0.1 1.1e-07 31.8 0.1 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.26 gi|336255516|ref|YP_004598623.1| - 7.4e-07 29.7 1.4 9.1e-06 26.1 1.4 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|336255516|ref|YP_004598623.1| - 0.00019 21.9 0.3 0.00025 21.5 0.3 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase DUF3375 PF11855.8 gi|336255516|ref|YP_004598623.1| - 0.0005 19.1 0.5 0.00068 18.7 0.5 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3375) Polyketide_cyc2 PF10604.9 gi|336255517|ref|YP_004598624.1| - 1.1e-11 45.2 0.7 1.3e-11 45.0 0.7 1.0 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.20 gi|336255517|ref|YP_004598624.1| - 1.1e-05 25.6 0.2 1.3e-05 25.4 0.2 1.4 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport AHSA1 PF08327.11 gi|336255517|ref|YP_004598624.1| - 9.1e-05 22.7 0.0 0.0001 22.5 0.0 1.2 1 0 0 1 1 1 1 Activator of Hsp90 ATPase homolog 1-like protein COX7C PF02935.16 gi|336255518|ref|YP_004598625.1| - 2.3 8.5 12.0 41 4.5 0.0 3.9 4 0 0 4 4 4 0 Cytochrome c oxidase subunit VIIc Acetyltransf_6 PF13480.7 gi|336255519|ref|YP_004598626.1| - 1.5e-11 44.6 2.7 1.5e-11 44.6 2.7 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain FemAB PF02388.16 gi|336255519|ref|YP_004598626.1| - 8.5e-08 31.5 0.5 1.3e-06 27.6 0.1 2.0 2 0 0 2 2 2 1 FemAB family FemAB_like PF04339.12 gi|336255519|ref|YP_004598626.1| - 4.8e-07 29.2 0.0 0.0029 16.8 0.0 2.1 2 0 0 2 2 2 2 Peptidogalycan biosysnthesis/recognition ADH_zinc_N PF00107.26 gi|336255520|ref|YP_004598627.1| - 1.2e-26 93.2 0.3 2.1e-26 92.4 0.3 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.12 gi|336255520|ref|YP_004598627.1| - 4.4e-21 74.8 0.8 7.5e-21 74.1 0.1 1.8 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N_2 PF13602.6 gi|336255520|ref|YP_004598627.1| - 1e-18 68.7 0.1 1.9e-18 67.8 0.1 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase NADH_4Fe-4S PF10589.9 gi|336255520|ref|YP_004598627.1| - 0.00081 19.4 0.1 0.002 18.1 0.1 1.7 1 0 0 1 1 1 1 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Epimerase PF01370.21 gi|336255521|ref|YP_004598628.1| - 2.3e-16 60.0 0.0 3.4e-16 59.5 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 gi|336255521|ref|YP_004598628.1| - 1e-09 37.9 0.2 1.6e-09 37.3 0.2 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|336255521|ref|YP_004598628.1| - 5e-08 32.4 0.0 1.1e-07 31.3 0.0 1.6 2 0 0 2 2 2 1 Male sterility protein Polysacc_synt_2 PF02719.15 gi|336255521|ref|YP_004598628.1| - 7.8e-08 31.8 0.3 8.9e-05 21.8 0.3 3.0 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.19 gi|336255521|ref|YP_004598628.1| - 2.3e-07 30.1 0.0 4.6e-07 29.1 0.0 1.4 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.6 gi|336255521|ref|YP_004598628.1| - 1.2e-06 28.6 0.5 6.1e-06 26.2 0.4 2.1 1 1 1 2 2 2 1 NAD(P)H-binding DapB_N PF01113.20 gi|336255521|ref|YP_004598628.1| - 0.0021 18.1 0.0 0.0042 17.2 0.0 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus GDP_Man_Dehyd PF16363.5 gi|336255521|ref|YP_004598628.1| - 0.0037 16.7 0.0 0.009 15.4 0.0 1.6 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase KR PF08659.10 gi|336255521|ref|YP_004598628.1| - 0.15 12.0 0.0 13 5.7 0.0 2.3 1 1 1 2 2 2 0 KR domain HemY_N PF07219.13 gi|336255522|ref|YP_004598629.1| - 0.0086 16.3 0.0 0.011 15.9 0.0 1.2 1 0 0 1 1 1 1 HemY protein N-terminus Mit_KHE1 PF10173.9 gi|336255522|ref|YP_004598629.1| - 3.1 7.8 4.2 4.4 7.4 4.2 1.2 1 0 0 1 1 1 0 Mitochondrial K+-H+ exchange-related GST_N_2 PF13409.6 gi|336255523|ref|YP_004598630.1| - 3.1e-22 78.7 0.0 6.3e-22 77.7 0.0 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_C_2 PF13410.6 gi|336255523|ref|YP_004598630.1| - 1.3e-11 44.3 0.4 3.1e-11 43.1 0.4 1.6 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C PF00043.25 gi|336255523|ref|YP_004598630.1| - 2.4e-06 27.7 0.0 4.6e-06 26.8 0.0 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_N_3 PF13417.6 gi|336255523|ref|YP_004598630.1| - 1.4e-05 25.4 0.0 0.29 11.6 0.0 2.6 2 0 0 2 2 2 2 Glutathione S-transferase, N-terminal domain GST_C_6 PF17171.4 gi|336255523|ref|YP_004598630.1| - 9.6e-05 22.1 0.2 0.00018 21.2 0.2 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C_3 PF14497.6 gi|336255523|ref|YP_004598630.1| - 0.00021 21.4 0.0 0.00039 20.6 0.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain SANT_DAMP1_like PF16282.5 gi|336255523|ref|YP_004598630.1| - 0.0054 16.9 0.3 0.016 15.4 0.3 1.8 1 0 0 1 1 1 1 SANT/Myb-like domain of DAMP1 Na_H_antiporter PF03553.14 gi|336255524|ref|YP_004598631.1| - 5.9e-30 104.5 42.0 5.1e-17 62.1 24.0 2.3 2 1 0 2 2 2 2 Na+/H+ antiporter family DUF1028 PF06267.12 gi|336255524|ref|YP_004598631.1| - 0.42 10.4 3.0 0.2 11.4 0.6 1.6 2 0 0 2 2 2 0 Family of unknown function (DUF1028) TRAM PF01938.20 gi|336255525|ref|YP_004598632.1| - 3.2e-06 27.0 0.2 4.3e-06 26.6 0.2 1.2 1 0 0 1 1 1 1 TRAM domain N6_N4_Mtase PF01555.18 gi|336255526|ref|YP_004598633.1| - 3.1e-11 43.5 0.0 1.5e-07 31.4 0.0 2.2 2 0 0 2 2 2 2 DNA methylase UPF0020 PF01170.18 gi|336255526|ref|YP_004598633.1| - 0.1 12.3 0.3 2.1 8.0 0.3 2.2 1 1 0 1 1 1 0 Putative RNA methylase family UPF0020 TrkA_N PF02254.18 gi|336255527|ref|YP_004598634.1| - 4.2e-26 91.5 1.2 4.6e-26 91.4 0.2 1.5 2 0 0 2 2 2 1 TrkA-N domain TrkA_C PF02080.21 gi|336255527|ref|YP_004598634.1| - 1.3e-14 53.7 0.1 2.7e-14 52.7 0.1 1.6 1 0 0 1 1 1 1 TrkA-C domain UDPG_MGDP_dh_N PF03721.14 gi|336255527|ref|YP_004598634.1| - 8.5e-06 25.5 0.0 1.4e-05 24.7 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_7 PF13241.6 gi|336255527|ref|YP_004598634.1| - 2.4e-05 24.7 0.0 4.9e-05 23.7 0.0 1.6 1 0 0 1 1 1 1 Putative NAD(P)-binding Sacchrp_dh_NADP PF03435.18 gi|336255527|ref|YP_004598634.1| - 0.00018 21.8 0.1 0.00026 21.2 0.1 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain 3HCDH_N PF02737.18 gi|336255527|ref|YP_004598634.1| - 0.0016 18.4 0.0 0.0025 17.7 0.0 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.16 gi|336255527|ref|YP_004598634.1| - 0.0017 18.0 0.0 0.014 15.0 0.0 2.1 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA NAD_binding_2 PF03446.15 gi|336255527|ref|YP_004598634.1| - 0.0023 18.1 0.2 0.013 15.7 0.0 2.2 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.12 gi|336255527|ref|YP_004598634.1| - 0.0029 17.2 0.0 0.0049 16.5 0.0 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain 2-Hacid_dh_C PF02826.19 gi|336255527|ref|YP_004598634.1| - 0.0043 16.4 0.0 0.0069 15.8 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Epimerase PF01370.21 gi|336255527|ref|YP_004598634.1| - 0.025 14.0 0.1 0.036 13.5 0.1 1.2 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family AdoHcyase_NAD PF00670.21 gi|336255527|ref|YP_004598634.1| - 0.08 13.0 0.1 0.12 12.4 0.1 1.4 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain F420_oxidored PF03807.17 gi|336255527|ref|YP_004598634.1| - 0.11 13.1 0.1 0.29 11.7 0.0 1.8 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent Xan_ur_permease PF00860.20 gi|336255528|ref|YP_004598635.1| - 1.1e-37 129.7 45.7 1.7e-37 129.1 45.7 1.3 1 1 0 1 1 1 1 Permease family Doppel PF11466.8 gi|336255528|ref|YP_004598635.1| - 0.047 13.3 0.1 0.28 10.9 0.1 2.4 1 0 0 1 1 1 0 Prion-like protein Doppel Vma12 PF11712.8 gi|336255528|ref|YP_004598635.1| - 0.14 12.2 9.3 0.074 13.1 3.6 2.8 2 0 0 2 2 2 0 Endoplasmic reticulum-based factor for assembly of V-ATPase GST_N_3 PF13417.6 gi|336255529|ref|YP_004598636.1| - 2.2e-15 56.8 0.0 2.4e-15 56.7 0.0 1.0 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Glutaredoxin PF00462.24 gi|336255529|ref|YP_004598636.1| - 1.5e-13 50.7 0.0 2e-13 50.3 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin GST_N_2 PF13409.6 gi|336255529|ref|YP_004598636.1| - 6.5e-11 42.4 0.0 7.4e-11 42.2 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain DUF836 PF05768.14 gi|336255529|ref|YP_004598636.1| - 0.00081 19.8 0.1 0.001 19.5 0.1 1.3 1 1 0 1 1 1 1 Glutaredoxin-like domain (DUF836) GST_N PF02798.20 gi|336255529|ref|YP_004598636.1| - 0.0048 17.2 0.0 0.0075 16.6 0.0 1.4 1 1 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Thioredoxin_2 PF13098.6 gi|336255529|ref|YP_004598636.1| - 0.024 15.1 0.0 0.029 14.8 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin-like domain MFS_1 PF07690.16 gi|336255530|ref|YP_004598637.1| - 2.3e-44 151.8 76.2 4.7e-33 114.6 48.7 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|336255530|ref|YP_004598637.1| - 2.1e-09 36.8 9.9 2.1e-09 36.8 9.9 2.1 1 1 1 2 2 2 2 MFS_1 like family HTH_3 PF01381.22 gi|336255531|ref|YP_004598638.1| - 6e-07 29.4 0.0 1.1e-06 28.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|336255531|ref|YP_004598638.1| - 3.1e-05 24.2 0.1 0.00015 22.1 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|336255531|ref|YP_004598638.1| - 0.00058 19.7 0.0 0.0014 18.5 0.0 1.6 1 0 0 1 1 1 1 HTH domain HTH_19 PF12844.7 gi|336255531|ref|YP_004598638.1| - 0.00089 19.2 0.0 0.0017 18.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|336255531|ref|YP_004598638.1| - 0.0063 16.3 0.4 0.013 15.4 0.1 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|336255531|ref|YP_004598638.1| - 0.03 14.1 0.0 0.075 12.9 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain Sigma70_r4 PF04545.16 gi|336255531|ref|YP_004598638.1| - 0.033 13.7 0.0 0.079 12.5 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_AraC PF00165.23 gi|336255531|ref|YP_004598638.1| - 0.05 13.7 0.0 0.1 12.7 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_8 PF02954.19 gi|336255531|ref|YP_004598638.1| - 0.085 12.6 0.0 0.26 11.1 0.0 1.9 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family HTH_10 PF04967.12 gi|336255531|ref|YP_004598638.1| - 0.12 12.2 0.0 0.25 11.2 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain DUF1743 PF08489.11 gi|336255532|ref|YP_004598639.1| - 3.6e-40 136.7 0.0 1e-39 135.2 0.0 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF1743) IBR PF01485.21 gi|336255532|ref|YP_004598639.1| - 0.038 14.2 0.2 0.064 13.5 0.2 1.3 1 0 0 1 1 1 0 IBR domain, a half RING-finger domain C1_1 PF00130.22 gi|336255532|ref|YP_004598639.1| - 0.046 13.6 0.1 0.098 12.6 0.1 1.5 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) tRNA_anti-codon PF01336.25 gi|336255532|ref|YP_004598639.1| - 0.047 13.7 0.0 0.22 11.5 0.0 2.1 1 1 0 1 1 1 0 OB-fold nucleic acid binding domain HypA PF01155.19 gi|336255532|ref|YP_004598639.1| - 0.084 12.9 0.4 0.17 11.9 0.4 1.5 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA OrfB_Zn_ribbon PF07282.11 gi|336255532|ref|YP_004598639.1| - 0.092 12.7 0.9 0.2 11.6 0.9 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.7 gi|336255532|ref|YP_004598639.1| - 0.13 12.3 2.3 0.36 10.8 2.3 1.8 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zinc_ribbon_6 PF14599.6 gi|336255532|ref|YP_004598639.1| - 0.18 11.9 0.1 0.35 10.9 0.1 1.5 1 0 0 1 1 1 0 Zinc-ribbon zinc-ribbons_6 PF07191.12 gi|336255532|ref|YP_004598639.1| - 0.18 11.8 0.8 0.34 10.9 0.8 1.4 1 0 0 1 1 1 0 zinc-ribbons Zn-ribbon_8 PF09723.10 gi|336255532|ref|YP_004598639.1| - 0.43 10.7 2.3 31 4.8 0.3 2.8 2 0 0 2 2 2 0 Zinc ribbon domain RNA_POL_M_15KD PF02150.16 gi|336255532|ref|YP_004598639.1| - 0.67 9.9 2.2 1.3 8.9 2.2 1.5 1 0 0 1 1 1 0 RNA polymerases M/15 Kd subunit MMR_HSR1_Xtn PF16897.5 gi|336255536|ref|YP_004598643.1| - 4.2e-31 107.1 0.7 8.6e-31 106.1 0.3 1.8 2 0 0 2 2 2 1 C-terminal region of MMR_HSR1 domain MMR_HSR1 PF01926.23 gi|336255536|ref|YP_004598643.1| - 3e-23 82.1 0.0 6.9e-23 80.9 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|336255536|ref|YP_004598643.1| - 9.5e-15 54.5 0.8 2.3e-11 43.5 0.0 2.3 2 0 0 2 2 2 2 Ferrous iron transport protein B TGS PF02824.21 gi|336255536|ref|YP_004598643.1| - 2.6e-13 49.8 0.0 4.5e-13 49.0 0.0 1.4 1 0 0 1 1 1 1 TGS domain RsgA_GTPase PF03193.16 gi|336255536|ref|YP_004598643.1| - 5e-07 29.8 1.7 0.029 14.3 0.0 3.1 3 2 0 3 3 3 2 RsgA GTPase Dynamin_N PF00350.23 gi|336255536|ref|YP_004598643.1| - 3.7e-05 23.9 0.2 0.083 12.9 0.1 2.8 2 0 0 2 2 2 2 Dynamin family ABC_tran PF00005.27 gi|336255536|ref|YP_004598643.1| - 0.0019 18.7 0.1 0.15 12.6 0.0 2.4 2 0 0 2 2 2 1 ABC transporter AIG1 PF04548.16 gi|336255536|ref|YP_004598643.1| - 0.0022 17.3 0.1 0.0044 16.4 0.0 1.5 2 0 0 2 2 2 1 AIG1 family GTP_EFTU PF00009.27 gi|336255536|ref|YP_004598643.1| - 0.0025 17.4 0.1 0.027 14.0 0.0 2.5 3 0 0 3 3 3 1 Elongation factor Tu GTP binding domain MeaB PF03308.16 gi|336255536|ref|YP_004598643.1| - 0.0057 15.7 0.2 0.71 8.8 0.0 2.8 2 1 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB Arf PF00025.21 gi|336255536|ref|YP_004598643.1| - 0.026 14.0 0.1 1.5 8.3 0.0 2.6 1 1 1 2 2 2 0 ADP-ribosylation factor family ThiS PF02597.20 gi|336255536|ref|YP_004598643.1| - 0.028 15.0 0.6 0.19 12.4 0.2 2.6 2 1 0 2 2 2 0 ThiS family Ras PF00071.22 gi|336255536|ref|YP_004598643.1| - 0.037 13.6 0.0 0.61 9.7 0.0 2.4 1 1 1 2 2 2 0 Ras family AAA_16 PF13191.6 gi|336255536|ref|YP_004598643.1| - 0.063 13.6 0.0 0.14 12.5 0.0 1.6 1 0 0 1 1 1 0 AAA ATPase domain Roc PF08477.13 gi|336255536|ref|YP_004598643.1| - 0.067 13.4 0.0 0.28 11.4 0.0 2.0 3 0 0 3 3 3 0 Ras of Complex, Roc, domain of DAPkinase SRPRB PF09439.10 gi|336255536|ref|YP_004598643.1| - 0.1 12.0 0.5 0.18 11.3 0.0 1.7 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit ABC_tran_CTD PF16326.5 gi|336255536|ref|YP_004598643.1| - 0.38 11.0 8.5 0.12 12.7 3.9 2.4 2 0 0 2 2 2 0 ABC transporter C-terminal domain Na_H_antiporter PF03553.14 gi|336255537|ref|YP_004598644.1| - 2.3e-65 220.8 34.5 8e-64 215.8 25.4 3.1 1 1 1 2 2 2 2 Na+/H+ antiporter family Peptidase_S15 PF02129.18 gi|336255537|ref|YP_004598644.1| - 0.084 12.4 0.1 0.14 11.7 0.1 1.3 1 0 0 1 1 1 0 X-Pro dipeptidyl-peptidase (S15 family) TNFR_16_TM PF18422.1 gi|336255537|ref|YP_004598644.1| - 0.15 12.0 9.4 0.25 11.3 0.5 2.9 2 0 0 2 2 2 0 Tumor necrosis factor receptor member 16 trans-membrane domain COX14 PF14880.6 gi|336255537|ref|YP_004598644.1| - 0.38 10.6 1.7 34 4.4 0.0 2.9 2 0 0 2 2 2 0 Cytochrome oxidase c assembly Glyoxalase PF00903.25 gi|336255538|ref|YP_004598645.1| - 2.5e-20 73.0 4.9 1.1e-11 45.0 0.4 2.2 2 0 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|336255538|ref|YP_004598645.1| - 1.3e-10 41.5 1.4 0.0001 22.5 0.1 4.1 3 1 1 4 4 4 3 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 gi|336255538|ref|YP_004598645.1| - 3.4e-08 34.2 3.8 0.0019 19.0 0.9 2.2 2 0 0 2 2 2 2 Glyoxalase-like domain Glyoxalase_3 PF13468.6 gi|336255538|ref|YP_004598645.1| - 0.001 19.2 3.2 0.43 10.7 0.6 3.7 2 2 0 2 2 2 2 Glyoxalase-like domain Abhydrolase_3 PF07859.13 gi|336255539|ref|YP_004598646.1| - 1.3e-18 67.7 1.6 2.2e-10 40.8 0.5 2.5 2 1 0 2 2 2 2 alpha/beta hydrolase fold Peptidase_S9 PF00326.21 gi|336255539|ref|YP_004598646.1| - 3.9e-14 52.6 0.2 4.8e-09 36.0 0.0 2.2 2 0 0 2 2 2 2 Prolyl oligopeptidase family COesterase PF00135.28 gi|336255539|ref|YP_004598646.1| - 5.3e-10 38.8 0.3 0.00082 18.4 0.2 2.4 2 1 1 3 3 3 2 Carboxylesterase family Hydrolase_4 PF12146.8 gi|336255539|ref|YP_004598646.1| - 6.7e-05 22.3 0.1 0.015 14.6 0.0 2.3 1 1 1 2 2 2 2 Serine aminopeptidase, S33 Peptidase_S15 PF02129.18 gi|336255539|ref|YP_004598646.1| - 9.9e-05 22.1 0.3 0.021 14.4 0.1 3.1 3 0 0 3 3 3 1 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_6 PF12697.7 gi|336255539|ref|YP_004598646.1| - 0.0031 18.2 6.6 0.0053 17.4 6.6 1.4 1 0 0 1 1 1 1 Alpha/beta hydrolase family AXE1 PF05448.12 gi|336255539|ref|YP_004598646.1| - 0.0059 15.3 0.1 0.29 9.8 0.0 2.2 2 0 0 2 2 2 1 Acetyl xylan esterase (AXE1) DLH PF01738.18 gi|336255539|ref|YP_004598646.1| - 0.0068 16.0 0.0 0.046 13.3 0.0 2.1 1 1 1 2 2 2 1 Dienelactone hydrolase family Esterase_phd PF10503.9 gi|336255539|ref|YP_004598646.1| - 0.055 13.0 3.8 0.49 9.8 0.6 3.1 4 0 0 4 4 4 0 Esterase PHB depolymerase Abhydrolase_2 PF02230.16 gi|336255539|ref|YP_004598646.1| - 0.2 11.4 0.0 0.48 10.2 0.0 1.6 2 0 0 2 2 2 0 Phospholipase/Carboxylesterase HTH_20 PF12840.7 gi|336255540|ref|YP_004598647.1| - 9.9e-06 25.5 0.2 1.9e-05 24.7 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain ATPase_gene1 PF09527.10 gi|336255540|ref|YP_004598647.1| - 0.03 14.5 2.0 0.045 13.9 2.0 1.2 1 0 0 1 1 1 0 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter SNase PF00565.17 gi|336255541|ref|YP_004598648.1| - 8.8e-12 45.5 0.0 1.4e-11 44.8 0.0 1.3 1 0 0 1 1 1 1 Staphylococcal nuclease homologue ABC_transp_aux PF09822.9 gi|336255541|ref|YP_004598648.1| - 1.7e-09 37.6 0.1 2.4e-05 23.9 0.1 2.2 2 0 0 2 2 2 2 ABC-type uncharacterized transport system DUF4350 PF14258.6 gi|336255541|ref|YP_004598648.1| - 2.3e-07 31.1 2.6 0.00074 19.9 0.1 3.5 3 0 0 3 3 3 2 Domain of unknown function (DUF4350) DUF1102 PF06510.11 gi|336255541|ref|YP_004598648.1| - 0.0013 18.9 0.1 0.0031 17.7 0.1 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF1102) DUF2194 PF09960.9 gi|336255541|ref|YP_004598648.1| - 0.028 12.8 0.0 0.073 11.4 0.0 1.5 2 0 0 2 2 2 0 Uncharacterised protein conserved in bacteria (DUF2194) Aldo_ket_red PF00248.21 gi|336255542|ref|YP_004598649.1| - 8.9e-59 199.1 0.0 2.9e-56 190.8 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family SAM_adeno_trans PF01887.16 gi|336255543|ref|YP_004598650.1| - 0.086 12.3 0.0 0.12 11.8 0.0 1.2 1 0 0 1 1 1 0 S-adenosyl-l-methionine hydroxide adenosyltransferase PAP2_3 PF14378.6 gi|336255544|ref|YP_004598651.1| - 9.3e-19 67.9 14.3 1.5e-18 67.1 14.3 1.4 1 0 0 1 1 1 1 PAP2 superfamily PAP2 PF01569.21 gi|336255544|ref|YP_004598651.1| - 3.5e-11 43.0 8.3 3.5e-11 43.0 8.3 1.8 1 1 1 2 2 2 1 PAP2 superfamily PAP2_C PF14360.6 gi|336255544|ref|YP_004598651.1| - 0.00095 19.7 3.1 0.0031 18.0 3.1 1.8 1 0 0 1 1 1 1 PAP2 superfamily C-terminal DUF1772 PF08592.11 gi|336255544|ref|YP_004598651.1| - 1.4 9.3 18.8 0.49 10.7 4.3 2.8 2 1 1 3 3 3 0 Domain of unknown function (DUF1772) Sulfatase PF00884.23 gi|336255545|ref|YP_004598652.1| - 8.8e-48 163.3 0.0 1.2e-47 162.8 0.0 1.2 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 gi|336255545|ref|YP_004598652.1| - 7e-13 48.9 0.3 7.6e-06 25.8 0.1 2.3 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase Pr_beta_C PF12465.8 gi|336255545|ref|YP_004598652.1| - 0.045 13.2 0.2 0.076 12.4 0.2 1.4 1 0 0 1 1 1 0 Proteasome beta subunits C terminal DUF1501 PF07394.12 gi|336255545|ref|YP_004598652.1| - 0.22 10.5 0.6 0.37 9.8 0.1 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1501) LPG_synthase_TM PF03706.13 gi|336255546|ref|YP_004598653.1| - 1.7e-38 132.9 40.7 2e-38 132.6 40.7 1.0 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region Got1 PF04178.12 gi|336255546|ref|YP_004598653.1| - 0.22 12.0 10.1 0.044 14.2 4.2 2.5 3 0 0 3 3 3 0 Got1/Sft2-like family DUF2304 PF10066.9 gi|336255546|ref|YP_004598653.1| - 3.8 7.8 11.5 1.6 8.9 7.5 2.4 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2304) SNARE_assoc PF09335.11 gi|336255547|ref|YP_004598654.1| - 5.2e-12 46.3 4.0 8.2e-12 45.7 4.0 1.3 1 0 0 1 1 1 1 SNARE associated Golgi protein YdjM PF04307.14 gi|336255548|ref|YP_004598655.1| - 3.3e-14 52.6 10.8 1.4e-13 50.6 10.8 1.8 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase DUF1576 PF07613.11 gi|336255548|ref|YP_004598655.1| - 0.12 11.8 3.1 0.042 13.4 0.5 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1576) YdjM PF04307.14 gi|336255549|ref|YP_004598656.1| - 2.9e-13 49.5 9.8 4.5e-13 48.9 9.8 1.3 1 0 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase Arylsulfotran_2 PF14269.6 gi|336255550|ref|YP_004598657.1| - 1.9e-10 40.6 0.7 1e-08 34.9 0.7 2.4 1 1 0 1 1 1 1 Arylsulfotransferase (ASST) Arylsulfotrans PF05935.11 gi|336255550|ref|YP_004598657.1| - 1.3e-08 34.2 1.5 5.1e-07 28.9 1.0 2.9 1 1 2 3 3 3 2 Arylsulfotransferase (ASST) NHL PF01436.21 gi|336255550|ref|YP_004598657.1| - 0.0092 16.0 2.0 8.5 6.6 0.0 3.7 3 0 0 3 3 3 2 NHL repeat TruB_C PF09142.11 gi|336255550|ref|YP_004598657.1| - 0.052 13.3 0.7 3.3 7.5 0.0 2.5 2 0 0 2 2 2 0 tRNA Pseudouridine synthase II, C terminal Metalloenzyme PF01676.18 gi|336255553|ref|YP_004598660.1| - 0.059 12.7 0.0 0.098 12.0 0.0 1.3 1 0 0 1 1 1 0 Metalloenzyme superfamily PglZ PF08665.12 gi|336255553|ref|YP_004598660.1| - 0.14 12.2 0.0 0.29 11.2 0.0 1.5 1 0 0 1 1 1 0 PglZ domain Sulfatase PF00884.23 gi|336255553|ref|YP_004598660.1| - 0.14 11.5 0.0 0.19 11.1 0.0 1.2 1 0 0 1 1 1 0 Sulfatase Glyco_trans_1_4 PF13692.6 gi|336255554|ref|YP_004598661.1| - 1.1e-16 61.5 0.0 8.1e-15 55.4 0.0 2.5 2 1 0 2 2 2 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|336255554|ref|YP_004598661.1| - 2.9e-15 56.2 0.0 3.9e-14 52.5 0.0 2.6 2 1 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|336255554|ref|YP_004598661.1| - 2.8e-13 50.2 0.0 4.3e-13 49.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|336255554|ref|YP_004598661.1| - 4.4e-07 30.5 0.1 6.7e-07 29.9 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|336255554|ref|YP_004598661.1| - 0.092 13.2 0.0 0.28 11.6 0.0 1.8 1 1 0 1 1 1 0 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|336255555|ref|YP_004598662.1| - 7.4e-24 84.2 0.0 1.2e-23 83.5 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|336255555|ref|YP_004598662.1| - 2.2e-21 76.7 0.0 6.1e-21 75.3 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|336255555|ref|YP_004598662.1| - 5.6e-18 65.5 0.9 6.9e-18 65.2 0.2 1.5 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|336255555|ref|YP_004598662.1| - 6.3e-12 46.2 0.6 1.2e-11 45.3 0.1 1.8 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|336255555|ref|YP_004598662.1| - 3.3e-08 33.6 0.0 9.2e-08 32.2 0.0 1.7 1 1 0 1 1 1 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.6 gi|336255555|ref|YP_004598662.1| - 4.2e-06 27.1 0.1 1.2e-05 25.6 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 DUF1508 PF07411.12 gi|336255556|ref|YP_004598663.1| - 7.6e-78 256.2 10.7 3.4e-10 39.6 0.1 12.8 13 0 0 13 13 13 12 Domain of unknown function (DUF1508) DDE_Tnp_IS240 PF13610.6 gi|336255556|ref|YP_004598663.1| - 0.0076 16.5 7.7 21 5.3 0.0 6.5 7 0 0 7 7 7 1 DDE domain Trypan_PARP PF05887.11 gi|336255556|ref|YP_004598663.1| - 0.16 11.9 8.9 0.099 12.6 1.4 3.1 3 0 0 3 3 3 0 Procyclic acidic repetitive protein (PARP) FtsQ PF03799.15 gi|336255556|ref|YP_004598663.1| - 0.21 12.4 6.8 6.2 7.7 0.0 5.5 4 3 2 7 7 7 0 Cell division protein FtsQ SPOR PF05036.13 gi|336255556|ref|YP_004598663.1| - 2 8.8 16.2 27 5.3 0.1 5.9 6 0 0 6 6 6 0 Sporulation related domain Cdc6_C PF09079.11 gi|336255557|ref|YP_004598664.1| - 1.6e-17 63.2 0.1 2.8e-17 62.5 0.1 1.4 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|336255557|ref|YP_004598664.1| - 2.9e-10 40.5 0.0 7.7e-10 39.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|336255557|ref|YP_004598664.1| - 5.2e-10 40.0 1.6 5.6e-09 36.6 0.0 2.8 2 2 0 2 2 2 1 AAA ATPase domain ATPase_2 PF01637.18 gi|336255557|ref|YP_004598664.1| - 0.00055 19.9 0.0 0.00097 19.1 0.0 1.4 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea DUF815 PF05673.13 gi|336255557|ref|YP_004598664.1| - 0.00078 18.7 0.0 0.0015 17.8 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) NACHT PF05729.12 gi|336255557|ref|YP_004598664.1| - 0.00081 19.3 0.0 0.0014 18.6 0.0 1.4 1 0 0 1 1 1 1 NACHT domain AAA PF00004.29 gi|336255557|ref|YP_004598664.1| - 0.00083 19.8 0.0 0.0042 17.5 0.0 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TsaE PF02367.17 gi|336255557|ref|YP_004598664.1| - 0.0065 16.5 0.0 0.012 15.6 0.0 1.5 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE TniB PF05621.11 gi|336255557|ref|YP_004598664.1| - 0.012 15.0 0.0 0.022 14.2 0.0 1.3 1 0 0 1 1 1 0 Bacterial TniB protein RNA_helicase PF00910.22 gi|336255557|ref|YP_004598664.1| - 0.024 15.0 0.0 0.051 14.0 0.0 1.6 1 0 0 1 1 1 0 RNA helicase PIF1 PF05970.14 gi|336255557|ref|YP_004598664.1| - 0.028 13.6 0.0 0.051 12.7 0.0 1.3 1 0 0 1 1 1 0 PIF1-like helicase AAA_7 PF12775.7 gi|336255557|ref|YP_004598664.1| - 0.029 13.9 0.0 0.15 11.6 0.0 2.0 2 0 0 2 2 2 0 P-loop containing dynein motor region NB-ARC PF00931.22 gi|336255557|ref|YP_004598664.1| - 0.039 13.1 0.0 0.059 12.5 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain AAA_32 PF13654.6 gi|336255557|ref|YP_004598664.1| - 0.041 12.7 0.3 0.78 8.4 0.0 2.3 2 1 0 2 2 2 0 AAA domain AAA_lid_2 PF17863.1 gi|336255557|ref|YP_004598664.1| - 0.055 13.3 1.2 0.11 12.3 1.2 1.6 1 0 0 1 1 1 0 AAA lid domain AAA_14 PF13173.6 gi|336255557|ref|YP_004598664.1| - 0.061 13.4 0.0 0.22 11.6 0.0 1.8 1 1 0 1 1 1 0 AAA domain TrwB_AAD_bind PF10412.9 gi|336255557|ref|YP_004598664.1| - 0.062 12.2 0.0 2.2 7.1 0.0 2.2 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain AAA_24 PF13479.6 gi|336255557|ref|YP_004598664.1| - 0.12 12.1 0.0 0.25 11.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|336255557|ref|YP_004598664.1| - 0.13 12.8 0.0 9.6 6.7 0.0 2.5 2 0 0 2 2 2 0 ABC transporter MMPL PF03176.15 gi|336255558|ref|YP_004598665.1| - 7.5e-38 130.3 22.0 3.7e-20 72.1 3.6 2.7 3 0 0 3 3 3 2 MMPL family Sterol-sensing PF12349.8 gi|336255558|ref|YP_004598665.1| - 8.9e-14 51.6 10.7 4.5e-07 29.8 0.1 2.7 3 0 0 3 3 3 2 Sterol-sensing domain of SREBP cleavage-activation Patched PF02460.18 gi|336255558|ref|YP_004598665.1| - 2.5e-11 42.4 16.7 8.5e-07 27.5 4.0 2.3 2 0 0 2 2 2 2 Patched family UDPG_MGDP_dh_N PF03721.14 gi|336255558|ref|YP_004598665.1| - 0.0086 15.7 0.1 0.018 14.6 0.1 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NPCBM_assoc PF10633.9 gi|336255559|ref|YP_004598666.1| - 4.8e-18 65.2 14.3 0.00016 21.8 0.0 6.0 5 3 0 5 5 5 4 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.11 gi|336255559|ref|YP_004598666.1| - 2.8e-15 56.4 4.1 6.2e-05 23.2 0.2 4.4 4 0 0 4 4 4 3 CARDB DUF11 PF01345.18 gi|336255559|ref|YP_004598666.1| - 1.3e-07 31.8 10.5 0.019 15.3 1.8 4.8 4 1 0 4 4 4 2 Domain of unknown function DUF11 Fn3-like PF14310.6 gi|336255559|ref|YP_004598666.1| - 0.00079 19.5 5.7 1.8 8.7 0.0 5.7 7 0 0 7 7 7 2 Fibronectin type III-like domain PHTB1_C PF14728.6 gi|336255559|ref|YP_004598666.1| - 0.00084 18.5 0.0 0.033 13.3 0.0 2.4 3 0 0 3 3 3 1 PTHB1 C-terminus Transglut_C PF00927.22 gi|336255559|ref|YP_004598666.1| - 0.0015 18.6 0.0 0.56 10.4 0.0 3.3 3 0 0 3 3 3 1 Transglutaminase family, C-terminal ig like domain DUF4832 PF16116.5 gi|336255559|ref|YP_004598666.1| - 0.0017 18.3 0.6 4.7 7.0 0.0 3.8 3 1 0 3 3 3 2 Domain of unknown function (DUF4832) FAS_meander PF17951.1 gi|336255559|ref|YP_004598666.1| - 0.002 18.0 0.5 0.11 12.3 0.1 3.1 3 1 1 4 4 4 1 Fatty acid synthase meander beta sheet domain ASH PF15780.5 gi|336255559|ref|YP_004598666.1| - 0.0043 17.2 5.4 5.2 7.3 0.1 4.4 4 1 1 5 5 5 1 Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin DUF4625 PF15418.6 gi|336255559|ref|YP_004598666.1| - 0.015 15.5 0.5 0.25 11.6 0.0 3.0 3 1 0 3 3 3 0 Domain of unknown function (DUF4625) DUF1828 PF08861.10 gi|336255559|ref|YP_004598666.1| - 0.025 14.8 0.0 0.055 13.7 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function DUF1828 E1_DerP2_DerF2 PF02221.15 gi|336255559|ref|YP_004598666.1| - 0.16 12.4 0.3 4.4 7.7 0.1 3.3 4 1 0 4 4 3 0 ML domain DUF916 PF06030.12 gi|336255559|ref|YP_004598666.1| - 0.29 11.2 1.4 21 5.2 0.0 3.8 4 1 0 5 5 5 0 Bacterial protein of unknown function (DUF916) DUF4232 PF14016.6 gi|336255559|ref|YP_004598666.1| - 0.57 10.3 15.0 2 8.6 2.9 5.4 3 2 1 5 5 5 0 Protein of unknown function (DUF4232) Pyr_redox_2 PF07992.14 gi|336255560|ref|YP_004598667.1| - 5.1e-41 140.8 1.4 6.3e-41 140.5 1.4 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Glutaredoxin PF00462.24 gi|336255560|ref|YP_004598667.1| - 3.2e-18 65.7 0.0 7.3e-18 64.5 0.0 1.7 1 0 0 1 1 1 1 Glutaredoxin Pyr_redox_3 PF13738.6 gi|336255560|ref|YP_004598667.1| - 5.6e-17 61.9 1.4 2e-15 56.8 0.0 2.5 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|336255560|ref|YP_004598667.1| - 4.3e-15 56.0 2.5 4e-14 52.9 0.5 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|336255560|ref|YP_004598667.1| - 0.00011 21.9 4.3 0.018 14.7 0.0 2.9 2 1 1 4 4 4 2 FAD dependent oxidoreductase GST_N_3 PF13417.6 gi|336255560|ref|YP_004598667.1| - 0.00026 21.3 0.0 0.00049 20.4 0.0 1.4 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain NAD_binding_7 PF13241.6 gi|336255560|ref|YP_004598667.1| - 0.00042 20.7 0.0 0.0079 16.6 0.0 2.5 3 0 0 3 3 2 1 Putative NAD(P)-binding DUF836 PF05768.14 gi|336255560|ref|YP_004598667.1| - 0.00058 20.2 0.0 0.0017 18.8 0.0 1.8 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) HI0933_like PF03486.14 gi|336255560|ref|YP_004598667.1| - 0.00078 18.3 0.2 1.3 7.6 0.0 2.9 4 0 0 4 4 4 2 HI0933-like protein NAD_binding_8 PF13450.6 gi|336255560|ref|YP_004598667.1| - 0.0043 17.2 1.4 0.011 15.9 0.0 2.4 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|336255560|ref|YP_004598667.1| - 0.0052 15.9 2.2 0.33 10.0 0.0 3.2 2 1 0 3 3 3 1 FAD binding domain FAD_oxidored PF12831.7 gi|336255560|ref|YP_004598667.1| - 0.0064 15.9 0.1 0.035 13.4 0.0 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase SH3BGR PF04908.15 gi|336255560|ref|YP_004598667.1| - 0.0094 16.1 0.0 0.021 15.0 0.0 1.6 1 0 0 1 1 1 1 SH3-binding, glutamic acid-rich protein Thioredoxin_3 PF13192.6 gi|336255560|ref|YP_004598667.1| - 0.041 13.9 0.0 0.63 10.1 0.0 2.7 2 0 0 2 2 2 0 Thioredoxin domain NAD_binding_9 PF13454.6 gi|336255560|ref|YP_004598667.1| - 0.47 10.4 1.8 1.1 9.3 0.0 2.4 3 0 0 3 3 3 0 FAD-NAD(P)-binding DUF389 PF04087.14 gi|336255561|ref|YP_004598668.1| - 2.4e-25 89.3 21.3 2.4e-25 89.3 21.3 2.4 3 0 0 3 3 3 1 Domain of unknown function (DUF389) DUF357 PF04010.13 gi|336255562|ref|YP_004598669.1| - 1.4e-32 111.5 0.3 1.7e-32 111.3 0.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF357) Cas_Cas1 PF01867.16 gi|336255562|ref|YP_004598669.1| - 0.081 12.1 0.0 0.098 11.8 0.0 1.1 1 0 0 1 1 1 0 CRISPR associated protein Cas1 FAA_hydrolase PF01557.18 gi|336255563|ref|YP_004598670.1| - 3.5e-67 226.3 0.0 4e-67 226.1 0.0 1.0 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family DUF2437 PF10370.9 gi|336255563|ref|YP_004598670.1| - 0.014 16.3 0.8 0.045 14.7 0.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF2437) HHH_2 PF12826.7 gi|336255564|ref|YP_004598671.1| - 0.12 12.5 0.1 0.19 11.8 0.1 1.3 1 1 0 1 1 1 0 Helix-hairpin-helix motif TOBE PF03459.17 gi|336255565|ref|YP_004598672.1| - 1.2e-13 51.2 3.8 2.8e-13 49.9 0.3 3.1 2 2 1 3 3 3 1 TOBE domain HTH_1 PF00126.27 gi|336255565|ref|YP_004598672.1| - 1.7e-07 31.1 0.2 6.8e-07 29.1 0.1 2.1 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family ABC_tran PF00005.27 gi|336255566|ref|YP_004598673.1| - 2.2e-33 115.7 0.0 3e-33 115.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|336255566|ref|YP_004598673.1| - 5.5e-11 42.8 0.0 7.4e-05 22.7 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|336255566|ref|YP_004598673.1| - 4.4e-06 27.2 0.3 1.2e-05 25.8 0.3 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|336255566|ref|YP_004598673.1| - 7.7e-06 25.6 0.0 0.00044 19.9 0.0 2.3 2 0 0 2 2 2 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|336255566|ref|YP_004598673.1| - 0.00011 21.8 0.1 0.019 14.4 0.0 2.2 2 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|336255566|ref|YP_004598673.1| - 0.00039 20.3 0.0 0.00092 19.1 0.0 1.5 2 0 0 2 2 2 1 RsgA GTPase AAA_22 PF13401.6 gi|336255566|ref|YP_004598673.1| - 0.00083 19.6 0.0 0.0016 18.7 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|336255566|ref|YP_004598673.1| - 0.021 14.4 0.0 0.037 13.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|336255566|ref|YP_004598673.1| - 0.031 14.4 0.0 0.08 13.0 0.0 1.7 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_18 PF13238.6 gi|336255566|ref|YP_004598673.1| - 0.035 14.7 0.0 0.074 13.6 0.0 1.6 2 0 0 2 2 1 0 AAA domain AAA_28 PF13521.6 gi|336255566|ref|YP_004598673.1| - 0.035 14.4 0.0 0.13 12.5 0.0 2.0 2 1 0 2 2 2 0 AAA domain SbcCD_C PF13558.6 gi|336255566|ref|YP_004598673.1| - 0.037 14.2 0.4 0.94 9.8 0.4 2.4 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_33 PF13671.6 gi|336255566|ref|YP_004598673.1| - 0.062 13.5 0.0 0.15 12.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|336255566|ref|YP_004598673.1| - 0.081 12.6 0.0 0.14 11.9 0.0 1.5 2 0 0 2 2 2 0 AAA ATPase domain AAA_23 PF13476.6 gi|336255566|ref|YP_004598673.1| - 0.082 13.4 0.0 0.13 12.8 0.0 1.2 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|336255566|ref|YP_004598673.1| - 0.15 12.0 0.0 0.26 11.2 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_24 PF13479.6 gi|336255566|ref|YP_004598673.1| - 0.2 11.4 0.0 0.28 10.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.22 gi|336255566|ref|YP_004598673.1| - 0.2 10.8 0.0 0.39 9.8 0.0 1.4 2 0 0 2 2 2 0 NB-ARC domain Rad17 PF03215.15 gi|336255566|ref|YP_004598673.1| - 0.22 11.4 0.0 0.34 10.8 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain BPD_transp_1 PF00528.22 gi|336255567|ref|YP_004598674.1| - 8e-13 48.5 11.9 8e-13 48.5 11.9 1.4 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component PBP_like_2 PF12849.7 gi|336255568|ref|YP_004598675.1| - 7.2e-31 107.9 1.3 9e-31 107.6 1.3 1.1 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_11 PF13531.6 gi|336255568|ref|YP_004598675.1| - 2e-07 31.0 0.1 1.6e-06 28.0 0.1 2.0 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein PBP_like PF12727.7 gi|336255568|ref|YP_004598675.1| - 0.00072 18.7 0.0 0.0013 17.8 0.0 1.4 1 0 0 1 1 1 1 PBP superfamily domain Phosphonate-bd PF12974.7 gi|336255568|ref|YP_004598675.1| - 0.057 13.0 0.1 0.64 9.6 0.1 2.5 1 1 0 1 1 1 0 ABC transporter, phosphonate, periplasmic substrate-binding protein TAT_signal PF10518.9 gi|336255568|ref|YP_004598675.1| - 0.28 11.1 5.0 0.31 11.0 3.0 2.1 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence PadR PF03551.14 gi|336255569|ref|YP_004598676.1| - 3.1e-14 52.7 0.1 3.7e-14 52.4 0.1 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family DUF1495 PF07381.11 gi|336255569|ref|YP_004598676.1| - 0.00069 19.4 0.0 0.00088 19.1 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) HTH_45 PF14947.6 gi|336255569|ref|YP_004598676.1| - 0.0013 18.6 0.0 0.0017 18.3 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DUF4364 PF14277.6 gi|336255569|ref|YP_004598676.1| - 0.0023 17.7 0.0 0.0029 17.4 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) HTH_27 PF13463.6 gi|336255569|ref|YP_004598676.1| - 0.048 14.1 0.0 0.061 13.8 0.0 1.4 1 1 0 1 1 1 0 Winged helix DNA-binding domain HTH_34 PF13601.6 gi|336255569|ref|YP_004598676.1| - 0.056 13.6 0.0 0.069 13.3 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain FUR PF01475.19 gi|336255569|ref|YP_004598676.1| - 0.13 12.4 0.0 0.15 12.2 0.0 1.1 1 0 0 1 1 1 0 Ferric uptake regulator family PAC2 PF09754.9 gi|336255570|ref|YP_004598677.1| - 2.6e-42 145.3 0.0 3e-42 145.0 0.0 1.0 1 0 0 1 1 1 1 PAC2 family Methyltransf_11 PF08241.12 gi|336255571|ref|YP_004598678.1| - 0.0024 18.5 0.0 0.041 14.5 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|336255571|ref|YP_004598678.1| - 0.035 14.8 0.2 0.37 11.5 0.0 2.2 1 1 1 2 2 2 0 Methyltransferase domain Methyltr_RsmB-F PF01189.17 gi|336255572|ref|YP_004598679.1| - 1.1e-52 178.6 0.0 1.6e-52 178.1 0.0 1.2 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltr_RsmF_N PF17125.5 gi|336255572|ref|YP_004598679.1| - 3.2e-06 27.5 0.0 2.6e-05 24.6 0.0 2.1 2 0 0 2 2 2 1 N-terminal domain of 16S rRNA methyltransferase RsmF FtsJ PF01728.19 gi|336255572|ref|YP_004598679.1| - 0.0011 19.1 0.0 0.0017 18.5 0.0 1.3 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_31 PF13847.6 gi|336255572|ref|YP_004598679.1| - 0.0043 16.9 0.0 0.0062 16.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltranf_PUA PF13636.6 gi|336255573|ref|YP_004598680.1| - 2.3e-06 27.5 1.2 4.2e-05 23.4 1.2 2.2 1 1 0 1 1 1 1 RNA-binding PUA-like domain of methyltransferase RsmF DrsE PF02635.15 gi|336255574|ref|YP_004598681.1| - 1.3e-08 35.2 0.1 1.6e-08 34.9 0.1 1.1 1 0 0 1 1 1 1 DsrE/DsrF-like family DrsE_2 PF13686.6 gi|336255574|ref|YP_004598681.1| - 0.00062 19.7 0.2 0.001 19.0 0.1 1.3 1 1 0 1 1 1 1 DsrE/DsrF/DrsH-like family Abhydrolase_6 PF12697.7 gi|336255575|ref|YP_004598682.1| - 2.3e-11 44.7 4.1 2.8e-11 44.5 4.1 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|336255575|ref|YP_004598682.1| - 2.6e-07 30.5 0.0 0.00012 21.8 0.0 2.3 1 1 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|336255575|ref|YP_004598682.1| - 5.8e-06 25.7 0.0 0.0011 18.3 0.0 2.1 2 0 0 2 2 2 2 Serine aminopeptidase, S33 Thioesterase PF00975.20 gi|336255575|ref|YP_004598682.1| - 0.0077 16.4 0.0 0.012 15.7 0.0 1.2 1 0 0 1 1 1 1 Thioesterase domain Abhydrolase_4 PF08386.10 gi|336255575|ref|YP_004598682.1| - 0.031 14.4 0.0 0.053 13.6 0.0 1.3 1 0 0 1 1 1 0 TAP-like protein Abhydrolase_5 PF12695.7 gi|336255575|ref|YP_004598682.1| - 0.13 12.0 0.0 0.75 9.5 0.0 2.1 3 0 0 3 3 3 0 Alpha/beta hydrolase family DLH PF01738.18 gi|336255575|ref|YP_004598682.1| - 0.17 11.4 0.0 9.6 5.7 0.0 2.1 2 0 0 2 2 2 0 Dienelactone hydrolase family Esterase PF00756.20 gi|336255575|ref|YP_004598682.1| - 0.23 11.1 0.0 0.36 10.4 0.0 1.2 1 0 0 1 1 1 0 Putative esterase Glyoxalase PF00903.25 gi|336255576|ref|YP_004598683.1| - 3.6e-26 91.8 0.2 1.3e-15 57.7 0.0 2.5 2 1 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 gi|336255576|ref|YP_004598683.1| - 0.015 16.1 2.3 0.028 15.2 0.1 2.5 2 2 0 2 2 2 0 Glyoxalase-like domain DUF790 PF05626.11 gi|336255577|ref|YP_004598684.1| - 5.5e-145 483.0 0.0 6.5e-145 482.7 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF790) DisA_N PF02457.16 gi|336255578|ref|YP_004598685.1| - 2.7e-07 30.2 0.0 4.8e-07 29.4 0.0 1.4 1 1 0 1 1 1 1 DisA bacterial checkpoint controller nucleotide-binding ResIII PF04851.15 gi|336255579|ref|YP_004598686.1| - 2.7e-25 89.4 0.0 6.7e-25 88.1 0.0 1.7 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit ERCC3_RAD25_C PF16203.5 gi|336255579|ref|YP_004598686.1| - 7.6e-17 61.3 0.0 1.1e-16 60.9 0.0 1.2 1 0 0 1 1 1 1 ERCC3/RAD25/XPB C-terminal helicase Helicase_C PF00271.31 gi|336255579|ref|YP_004598686.1| - 5.2e-15 55.7 0.0 2.7e-14 53.5 0.0 2.1 3 0 0 3 3 3 1 Helicase conserved C-terminal domain XPB_DRD PF18458.1 gi|336255579|ref|YP_004598686.1| - 8.9e-15 54.3 1.3 2.3e-14 53.0 1.3 1.8 1 0 0 1 1 1 1 Xeroderma pigmentosum group B helicase damage recognition domain DEAD PF00270.29 gi|336255579|ref|YP_004598686.1| - 1.8e-06 27.8 0.0 1.7e-05 24.7 0.0 2.1 1 1 0 1 1 1 1 DEAD/DEAH box helicase SNF2_N PF00176.23 gi|336255579|ref|YP_004598686.1| - 0.0002 20.2 0.0 0.019 13.7 0.0 2.5 2 1 0 2 2 2 2 SNF2 family N-terminal domain Helicase_C_2 PF13307.6 gi|336255579|ref|YP_004598686.1| - 0.029 14.6 0.0 9.9 6.3 0.0 2.6 3 0 0 3 3 3 0 Helicase C-terminal domain AAA_22 PF13401.6 gi|336255579|ref|YP_004598686.1| - 0.1 12.8 0.0 2.9 8.2 0.0 2.9 2 1 0 2 2 2 0 AAA domain Response_reg PF00072.24 gi|336255580|ref|YP_004598687.1| - 3.6e-19 69.0 0.0 4.5e-19 68.7 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain Response_reg PF00072.24 gi|336255581|ref|YP_004598688.1| - 3.2e-16 59.5 0.2 3.8e-16 59.2 0.2 1.1 1 0 0 1 1 1 1 Response regulator receiver domain GrpE PF01025.19 gi|336255582|ref|YP_004598689.1| - 1.2e-43 148.6 10.5 1.2e-43 148.6 10.5 2.2 1 1 1 2 2 2 1 GrpE Atg14 PF10186.9 gi|336255582|ref|YP_004598689.1| - 6e-06 25.6 9.6 9.2e-06 25.0 9.6 1.3 1 0 0 1 1 1 1 Vacuolar sorting 38 and autophagy-related subunit 14 Exonuc_VII_L PF02601.15 gi|336255582|ref|YP_004598689.1| - 1.7e-05 24.5 4.6 2.4e-05 24.1 4.6 1.3 1 0 0 1 1 1 1 Exonuclease VII, large subunit MAD PF05557.13 gi|336255582|ref|YP_004598689.1| - 0.00031 19.3 20.8 0.00045 18.7 20.8 1.2 1 0 0 1 1 1 1 Mitotic checkpoint protein TMF_DNA_bd PF12329.8 gi|336255582|ref|YP_004598689.1| - 0.00033 20.6 10.2 0.00033 20.6 10.2 2.9 2 2 0 2 2 2 1 TATA element modulatory factor 1 DNA binding Spc7 PF08317.11 gi|336255582|ref|YP_004598689.1| - 0.00041 19.3 19.0 0.00041 19.3 19.0 1.8 1 1 1 2 2 2 1 Spc7 kinetochore protein UPF0242 PF06785.11 gi|336255582|ref|YP_004598689.1| - 0.00084 19.5 18.5 0.00084 19.5 18.5 2.5 1 1 2 3 3 3 1 Uncharacterised protein family (UPF0242) N-terminus IFT57 PF10498.9 gi|336255582|ref|YP_004598689.1| - 0.0015 17.6 4.4 0.0015 17.6 4.4 3.5 2 1 1 3 3 3 1 Intra-flagellar transport protein 57 DUF148 PF02520.17 gi|336255582|ref|YP_004598689.1| - 0.0015 18.6 10.2 0.0081 16.3 3.2 2.4 1 1 0 2 2 2 1 Domain of unknown function DUF148 DUF745 PF05335.13 gi|336255582|ref|YP_004598689.1| - 0.0023 17.7 10.5 0.0023 17.7 10.5 1.8 2 0 0 2 2 1 1 Protein of unknown function (DUF745) DUF812 PF05667.11 gi|336255582|ref|YP_004598689.1| - 0.0029 16.6 16.3 0.0047 15.9 16.3 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF812) Fez1 PF06818.15 gi|336255582|ref|YP_004598689.1| - 0.003 18.0 19.7 0.0067 16.9 19.7 1.6 1 0 0 1 1 1 1 Fez1 FAM76 PF16046.5 gi|336255582|ref|YP_004598689.1| - 0.0039 16.6 8.9 0.0074 15.7 8.9 1.4 1 0 0 1 1 1 1 FAM76 protein Bap31_Bap29_C PF18035.1 gi|336255582|ref|YP_004598689.1| - 0.0075 16.3 15.6 0.024 14.6 0.0 3.8 4 0 0 4 4 3 1 Bap31/Bap29 cytoplasmic coiled-coil domain MPS2 PF17060.5 gi|336255582|ref|YP_004598689.1| - 0.0086 15.4 18.5 0.0089 15.3 13.2 2.1 1 1 1 2 2 2 1 Monopolar spindle protein 2 Med9 PF07544.13 gi|336255582|ref|YP_004598689.1| - 0.0092 16.1 14.9 0.14 12.3 0.5 3.5 2 1 1 4 4 3 2 RNA polymerase II transcription mediator complex subunit 9 ADIP PF11559.8 gi|336255582|ref|YP_004598689.1| - 0.01 15.9 12.4 0.021 14.9 12.4 1.6 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding DUF948 PF06103.11 gi|336255582|ref|YP_004598689.1| - 0.015 15.6 7.5 0.031 14.5 1.1 3.0 1 1 2 3 3 3 0 Bacterial protein of unknown function (DUF948) DUF724 PF05266.14 gi|336255582|ref|YP_004598689.1| - 0.015 15.1 8.8 0.015 15.1 8.8 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF724) Fib_alpha PF08702.10 gi|336255582|ref|YP_004598689.1| - 0.017 15.3 11.9 0.064 13.4 0.7 2.3 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family HIP1_clath_bdg PF16515.5 gi|336255582|ref|YP_004598689.1| - 0.018 15.7 21.9 0.19 12.3 6.6 2.6 1 1 0 2 2 2 0 Clathrin-binding domain of Huntingtin-interacting protein 1 DUF3584 PF12128.8 gi|336255582|ref|YP_004598689.1| - 0.018 12.6 23.4 0.03 11.9 23.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Utp8 PF10395.9 gi|336255582|ref|YP_004598689.1| - 0.028 13.0 1.5 0.036 12.6 1.5 1.1 1 0 0 1 1 1 0 Utp8 family Mce4_CUP1 PF11887.8 gi|336255582|ref|YP_004598689.1| - 0.036 13.5 3.0 0.28 10.6 0.5 2.1 1 1 1 2 2 2 0 Cholesterol uptake porter CUP1 of Mce4, putative DHR10 PF18595.1 gi|336255582|ref|YP_004598689.1| - 0.048 13.7 25.7 0.028 14.5 22.9 2.0 1 1 0 1 1 1 0 Designed helical repeat protein 10 domain Syntaxin-6_N PF09177.11 gi|336255582|ref|YP_004598689.1| - 0.053 14.1 16.0 0.54 10.8 6.8 2.7 1 1 1 2 2 2 0 Syntaxin 6, N-terminal AAA_13 PF13166.6 gi|336255582|ref|YP_004598689.1| - 0.057 12.1 13.7 0.088 11.4 13.7 1.2 1 0 0 1 1 1 0 AAA domain HOOK PF05622.12 gi|336255582|ref|YP_004598689.1| - 0.061 11.5 23.5 0.12 10.5 23.2 1.6 1 1 0 1 1 1 0 HOOK protein Prominin PF05478.11 gi|336255582|ref|YP_004598689.1| - 0.092 10.7 3.1 0.14 10.1 3.1 1.3 1 0 0 1 1 1 0 Prominin DUF16 PF01519.16 gi|336255582|ref|YP_004598689.1| - 0.094 13.2 16.8 0.054 14.0 7.7 2.8 1 1 1 2 2 2 0 Protein of unknown function DUF16 CHASE6_C PF17150.4 gi|336255582|ref|YP_004598689.1| - 0.11 13.1 5.6 4.1 8.1 0.1 2.7 1 1 1 2 2 2 0 C-terminal domain of two-partite extracellular sensor domain BST2 PF16716.5 gi|336255582|ref|YP_004598689.1| - 0.12 13.0 13.9 0.041 14.5 6.5 2.8 1 1 2 3 3 3 0 Bone marrow stromal antigen 2 CAP_N PF01213.19 gi|336255582|ref|YP_004598689.1| - 0.13 11.8 7.3 0.18 11.3 6.0 1.9 1 1 1 2 2 2 0 Adenylate cyclase associated (CAP) N terminal Laminin_II PF06009.12 gi|336255582|ref|YP_004598689.1| - 0.13 12.3 11.7 0.88 9.6 1.4 2.4 1 1 1 2 2 2 0 Laminin Domain II DIT1_PvcA PF05141.12 gi|336255582|ref|YP_004598689.1| - 0.15 11.5 3.1 0.28 10.6 3.1 1.4 1 0 0 1 1 1 0 Pyoverdine/dityrosine biosynthesis protein CR6_interact PF10147.9 gi|336255582|ref|YP_004598689.1| - 0.18 11.5 11.9 0.3 10.8 11.9 1.4 1 0 0 1 1 1 0 Growth arrest and DNA-damage-inducible proteins-interacting protein 1 Mod_r PF07200.13 gi|336255582|ref|YP_004598689.1| - 0.19 11.8 16.4 0.62 10.2 16.1 2.0 1 1 0 1 1 1 0 Modifier of rudimentary (Mod(r)) protein Bacillus_HBL PF05791.11 gi|336255582|ref|YP_004598689.1| - 0.24 11.2 8.3 1.9 8.3 1.4 2.6 1 1 1 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) TMPIT PF07851.13 gi|336255582|ref|YP_004598689.1| - 0.34 10.1 11.9 0.042 13.1 5.4 1.9 1 1 1 2 2 2 0 TMPIT-like protein KASH_CCD PF14662.6 gi|336255582|ref|YP_004598689.1| - 0.34 10.7 20.9 0.047 13.5 15.7 1.9 1 1 1 2 2 2 0 Coiled-coil region of CCDC155 or KASH VitD-bind_III PF09164.10 gi|336255582|ref|YP_004598689.1| - 0.35 10.9 0.8 0.98 9.5 0.8 1.7 1 0 0 1 1 1 0 Vitamin D binding protein, domain III HAUS6_N PF14661.6 gi|336255582|ref|YP_004598689.1| - 0.35 10.4 8.2 0.66 9.5 8.2 1.5 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 6 N-terminus Troponin PF00992.20 gi|336255582|ref|YP_004598689.1| - 0.43 10.9 19.3 1 9.7 19.1 1.7 1 1 0 1 1 1 0 Troponin DivIVA PF05103.13 gi|336255582|ref|YP_004598689.1| - 0.51 10.4 21.1 2.6 8.1 12.9 2.6 1 1 1 2 2 2 0 DivIVA protein Sipho_Gp157 PF05565.11 gi|336255582|ref|YP_004598689.1| - 0.63 10.0 18.2 0.75 9.8 1.0 2.5 1 1 1 2 2 2 0 Siphovirus Gp157 Csm1_N PF18504.1 gi|336255582|ref|YP_004598689.1| - 0.68 10.3 22.2 9.9 6.6 2.0 3.8 1 1 2 3 3 3 0 Csm1 N-terminal domain KxDL PF10241.9 gi|336255582|ref|YP_004598689.1| - 0.8 10.0 9.0 5.5 7.4 5.8 2.6 1 1 3 4 4 4 0 Uncharacterized conserved protein COG2 PF06148.11 gi|336255582|ref|YP_004598689.1| - 0.8 9.8 13.9 0.13 12.4 6.3 2.6 1 1 2 3 3 3 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF5082 PF16888.5 gi|336255582|ref|YP_004598689.1| - 0.85 9.9 16.4 2.4 8.5 0.4 3.1 2 1 1 3 3 3 0 Domain of unknown function (DUF5082) NPV_P10 PF05531.12 gi|336255582|ref|YP_004598689.1| - 0.91 10.0 10.2 3.5 8.2 3.1 3.6 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein Erythro_esteras PF05139.14 gi|336255582|ref|YP_004598689.1| - 1 9.1 16.2 0.042 13.7 10.1 1.7 2 0 0 2 2 1 0 Erythromycin esterase Lebercilin PF15619.6 gi|336255582|ref|YP_004598689.1| - 1.1 8.9 23.3 5.8 6.5 5.0 2.5 1 1 1 2 2 2 0 Ciliary protein causing Leber congenital amaurosis disease TMF_TATA_bd PF12325.8 gi|336255582|ref|YP_004598689.1| - 1.3 9.3 24.6 1 9.6 12.7 2.5 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding YabA PF06156.13 gi|336255582|ref|YP_004598689.1| - 1.3 9.7 11.9 12 6.6 0.5 3.2 1 1 2 3 3 3 0 Initiation control protein YabA Prefoldin_2 PF01920.20 gi|336255582|ref|YP_004598689.1| - 1.4 8.9 21.0 6.3 6.8 0.6 3.6 1 1 1 3 3 3 0 Prefoldin subunit DUF1664 PF07889.12 gi|336255582|ref|YP_004598689.1| - 1.6 8.8 12.1 0.89 9.6 5.8 2.7 1 1 2 3 3 3 0 Protein of unknown function (DUF1664) ATG16 PF08614.11 gi|336255582|ref|YP_004598689.1| - 1.6 8.9 34.3 0.033 14.4 26.2 2.3 2 1 1 3 3 2 0 Autophagy protein 16 (ATG16) Spc42p PF11544.8 gi|336255582|ref|YP_004598689.1| - 1.7 8.7 8.5 0.87 9.6 0.1 3.2 2 1 0 2 2 2 0 Spindle pole body component Spc42p BLOC1_2 PF10046.9 gi|336255582|ref|YP_004598689.1| - 1.9 8.8 10.1 0.83 10.0 5.1 2.5 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DASH_Dad2 PF08654.10 gi|336255582|ref|YP_004598689.1| - 2.5 8.6 12.0 6.8 7.2 6.2 3.3 1 1 2 3 3 2 0 DASH complex subunit Dad2 DUF3450 PF11932.8 gi|336255582|ref|YP_004598689.1| - 2.7 7.2 21.6 0.74 9.1 6.0 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) FlaC_arch PF05377.11 gi|336255582|ref|YP_004598689.1| - 3.5 8.1 11.8 8.4 6.9 0.5 3.6 1 1 3 4 4 4 0 Flagella accessory protein C (FlaC) SpoVR PF04293.13 gi|336255582|ref|YP_004598689.1| - 3.9 6.1 7.5 5.6 5.5 7.5 1.2 1 0 0 1 1 1 0 SpoVR like protein DinB PF05163.12 gi|336255582|ref|YP_004598689.1| - 5.2 7.0 8.7 2.9 7.8 4.8 2.2 2 0 0 2 2 2 0 DinB family ING PF12998.7 gi|336255582|ref|YP_004598689.1| - 5.4 7.7 12.9 1 10.0 1.7 2.5 1 1 1 2 2 2 0 Inhibitor of growth proteins N-terminal histone-binding SlyX PF04102.12 gi|336255582|ref|YP_004598689.1| - 6.1 7.5 18.7 6.9 7.4 11.5 3.7 1 1 2 3 3 3 0 SlyX Jnk-SapK_ap_N PF09744.9 gi|336255582|ref|YP_004598689.1| - 7.1 6.8 25.4 11 6.3 1.4 2.5 1 1 1 2 2 2 0 JNK_SAPK-associated protein-1 FUSC PF04632.12 gi|336255582|ref|YP_004598689.1| - 7.8 4.9 10.6 11 4.3 10.6 1.2 1 0 0 1 1 1 0 Fusaric acid resistance protein family Syntaxin_2 PF14523.6 gi|336255582|ref|YP_004598689.1| - 8 6.9 11.8 45 4.5 10.4 2.6 1 1 1 2 2 2 0 Syntaxin-like protein HSP70 PF00012.20 gi|336255583|ref|YP_004598690.1| - 2.6e-242 805.3 18.7 2.4e-240 798.8 18.7 2.0 1 1 0 1 1 1 1 Hsp70 protein MreB_Mbl PF06723.13 gi|336255583|ref|YP_004598690.1| - 9.4e-20 70.7 0.3 9.4e-20 70.7 0.3 1.8 2 1 0 2 2 2 1 MreB/Mbl protein StbA PF06406.11 gi|336255583|ref|YP_004598690.1| - 0.014 14.7 0.0 0.1 11.8 0.0 2.2 2 0 0 2 2 2 0 StbA protein FGGY_C PF02782.16 gi|336255583|ref|YP_004598690.1| - 0.048 13.4 0.0 0.18 11.5 0.0 1.9 2 0 0 2 2 2 0 FGGY family of carbohydrate kinases, C-terminal domain Ydc2-catalyt PF09159.10 gi|336255583|ref|YP_004598690.1| - 0.049 13.4 0.7 5.7 6.6 0.0 2.3 2 0 0 2 2 2 0 Mitochondrial resolvase Ydc2 / RNA splicing MRS1 DMRL_synthase PF00885.19 gi|336255583|ref|YP_004598690.1| - 0.16 11.8 0.0 0.16 11.8 0.0 2.0 2 0 0 2 2 2 0 6,7-dimethyl-8-ribityllumazine synthase Pro_dh PF01619.18 gi|336255583|ref|YP_004598690.1| - 0.29 10.6 7.8 0.57 9.7 0.0 3.0 3 0 0 3 3 3 0 Proline dehydrogenase Fib_alpha PF08702.10 gi|336255583|ref|YP_004598690.1| - 0.76 10.0 8.4 2.3 8.4 8.4 1.7 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family IFT57 PF10498.9 gi|336255583|ref|YP_004598690.1| - 1.3 7.9 12.1 0.28 10.1 8.1 1.8 2 0 0 2 2 2 0 Intra-flagellar transport protein 57 PhyH PF05721.13 gi|336255583|ref|YP_004598690.1| - 2.4 8.4 4.4 3.1 8.0 2.0 2.2 2 0 0 2 2 2 0 Phytanoyl-CoA dioxygenase (PhyH) TraF_2 PF13729.6 gi|336255583|ref|YP_004598690.1| - 7 5.9 11.4 3.7 6.8 8.6 1.8 1 1 1 2 2 2 0 F plasmid transfer operon, TraF, protein DnaJ_C PF01556.18 gi|336255585|ref|YP_004598692.1| - 2.1e-44 151.2 0.0 3e-44 150.7 0.0 1.2 1 0 0 1 1 1 1 DnaJ C terminal domain DnaJ PF00226.31 gi|336255585|ref|YP_004598692.1| - 1e-25 89.6 3.4 2.2e-25 88.6 3.4 1.6 1 0 0 1 1 1 1 DnaJ domain DnaJ_CXXCXGXG PF00684.19 gi|336255585|ref|YP_004598692.1| - 8.6e-12 45.2 17.8 2e-11 44.1 17.8 1.7 1 0 0 1 1 1 1 DnaJ central domain Anti-TRAP PF15777.5 gi|336255585|ref|YP_004598692.1| - 0.00025 20.9 12.5 0.015 15.3 4.1 2.5 2 0 0 2 2 2 2 Tryptophan RNA-binding attenuator protein inhibitory protein DUF5351 PF17302.2 gi|336255585|ref|YP_004598692.1| - 0.056 13.6 27.0 2.2 8.5 0.6 4.7 4 0 0 4 4 4 0 Family of unknown function (DUF5351) A2L_zn_ribbon PF08792.10 gi|336255585|ref|YP_004598692.1| - 0.12 12.2 6.2 1.7 8.4 0.1 3.2 2 1 1 3 3 3 0 A2L zinc ribbon domain DZR PF12773.7 gi|336255585|ref|YP_004598692.1| - 0.12 12.4 13.3 0.39 10.8 13.4 1.8 1 1 1 2 2 2 0 Double zinc ribbon HypA PF01155.19 gi|336255585|ref|YP_004598692.1| - 0.27 11.3 11.0 2.9 8.0 2.5 2.3 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF2318 PF10080.9 gi|336255585|ref|YP_004598692.1| - 0.72 10.0 5.2 7.7 6.7 1.4 2.4 1 1 1 2 2 2 0 Predicted membrane protein (DUF2318) zf-ribbon_3 PF13248.6 gi|336255585|ref|YP_004598692.1| - 4.8 6.7 9.5 0.9 9.0 3.1 2.5 2 0 0 2 2 2 0 zinc-ribbon domain TackOD1 PF18551.1 gi|336255585|ref|YP_004598692.1| - 8.9 5.9 9.9 2.1 8.0 0.7 2.5 2 1 1 3 3 3 0 Thaumarchaeal output domain 1 Sensor PF13796.6 gi|336255586|ref|YP_004598693.1| - 9.6e-37 126.5 25.4 2.7e-35 121.8 23.3 1.5 1 1 1 2 2 2 2 Putative sensor DUF996 PF06195.13 gi|336255586|ref|YP_004598693.1| - 0.87 9.9 10.3 0.12 12.7 1.0 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF996) DJ-1_PfpI PF01965.24 gi|336255587|ref|YP_004598694.1| - 5.9e-52 175.8 0.0 7.4e-52 175.5 0.0 1.0 1 0 0 1 1 1 1 DJ-1/PfpI family ThiJ_like PF17124.5 gi|336255587|ref|YP_004598694.1| - 0.0021 17.8 0.1 0.022 14.4 0.0 2.1 1 1 0 2 2 2 1 ThiJ/PfpI family-like GATase PF00117.28 gi|336255587|ref|YP_004598694.1| - 0.0022 17.8 0.0 0.0028 17.4 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.14 gi|336255587|ref|YP_004598694.1| - 0.0048 16.5 0.0 0.015 14.9 0.0 1.7 1 1 1 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain Catalase_C PF18011.1 gi|336255587|ref|YP_004598694.1| - 0.015 15.0 0.0 0.021 14.4 0.0 1.2 1 0 0 1 1 1 0 C-terminal domain found in long catalases SnoaL_3 PF13474.6 gi|336255587|ref|YP_004598694.1| - 0.11 12.7 0.0 0.18 12.1 0.0 1.3 1 0 0 1 1 1 0 SnoaL-like domain Peptidase_C26 PF07722.13 gi|336255587|ref|YP_004598694.1| - 0.14 11.9 0.0 0.2 11.4 0.0 1.2 1 0 0 1 1 1 0 Peptidase C26 SNO PF01174.19 gi|336255587|ref|YP_004598694.1| - 0.22 11.3 0.0 0.3 10.9 0.0 1.2 1 0 0 1 1 1 0 SNO glutamine amidotransferase family AMP-binding PF00501.28 gi|336255588|ref|YP_004598695.1| - 0.0014 17.3 0.0 0.15 10.6 0.0 2.0 2 0 0 2 2 2 2 AMP-binding enzyme DAO PF01266.24 gi|336255589|ref|YP_004598696.1| - 7.7e-44 150.7 0.5 1.1e-43 150.2 0.5 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Rieske PF00355.26 gi|336255589|ref|YP_004598696.1| - 5.2e-15 55.2 0.0 1.2e-14 54.0 0.0 1.5 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain FAD_binding_2 PF00890.24 gi|336255589|ref|YP_004598696.1| - 2.4e-06 26.9 0.0 3.9e-06 26.2 0.0 1.4 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.6 gi|336255589|ref|YP_004598696.1| - 6.7e-06 26.2 0.0 5.8e-05 23.2 0.1 2.6 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 gi|336255589|ref|YP_004598696.1| - 2.5e-05 23.7 0.0 4e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|336255589|ref|YP_004598696.1| - 4.3e-05 22.9 0.0 0.00011 21.5 0.0 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|336255589|ref|YP_004598696.1| - 0.00028 20.2 0.1 0.002 17.5 0.1 2.2 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|336255589|ref|YP_004598696.1| - 0.0014 19.1 0.3 0.0043 17.6 0.3 1.8 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|336255589|ref|YP_004598696.1| - 0.0028 16.4 0.0 0.0045 15.8 0.0 1.4 1 0 0 1 1 1 1 HI0933-like protein FAD_oxidored PF12831.7 gi|336255589|ref|YP_004598696.1| - 0.0052 16.2 0.0 0.0076 15.6 0.0 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase Trp_halogenase PF04820.14 gi|336255589|ref|YP_004598696.1| - 0.011 14.7 0.5 0.015 14.1 0.5 1.2 1 0 0 1 1 1 0 Tryptophan halogenase Thi4 PF01946.17 gi|336255589|ref|YP_004598696.1| - 0.012 14.8 0.0 0.022 14.0 0.0 1.3 1 0 0 1 1 1 0 Thi4 family GIDA PF01134.22 gi|336255589|ref|YP_004598696.1| - 0.056 12.5 0.1 0.18 10.8 0.4 1.6 2 0 0 2 2 2 0 Glucose inhibited division protein A Amino_oxidase PF01593.24 gi|336255589|ref|YP_004598696.1| - 0.12 11.7 0.5 0.25 10.6 0.2 1.7 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase Transket_pyr PF02779.24 gi|336255590|ref|YP_004598697.1| - 7.8e-42 142.9 0.0 1.1e-41 142.4 0.0 1.2 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.20 gi|336255590|ref|YP_004598697.1| - 8.9e-36 122.5 0.1 1.6e-35 121.7 0.1 1.4 1 0 0 1 1 1 1 Transketolase, C-terminal domain PFOR_II PF17147.4 gi|336255590|ref|YP_004598697.1| - 0.0071 16.6 0.1 0.02 15.2 0.0 1.8 2 0 0 2 2 2 1 Pyruvate:ferredoxin oxidoreductase core domain II E1_dh PF00676.20 gi|336255591|ref|YP_004598698.1| - 2.7e-80 269.5 0.0 3.5e-80 269.2 0.0 1.0 1 0 0 1 1 1 1 Dehydrogenase E1 component DXP_synthase_N PF13292.6 gi|336255591|ref|YP_004598698.1| - 7.2e-05 22.1 0.1 0.00012 21.4 0.1 1.3 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase TPP_enzyme_C PF02775.21 gi|336255591|ref|YP_004598698.1| - 0.0089 15.8 0.8 0.032 14.0 0.8 1.9 1 1 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Transketolase_N PF00456.21 gi|336255591|ref|YP_004598698.1| - 0.043 12.8 0.1 0.069 12.1 0.1 1.2 1 0 0 1 1 1 0 Transketolase, thiamine diphosphate binding domain HTH_41 PF14502.6 gi|336255591|ref|YP_004598698.1| - 0.15 11.8 0.0 0.31 10.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain TraF_2 PF13729.6 gi|336255592|ref|YP_004598699.1| - 0.02 14.3 0.2 0.024 14.0 0.2 1.1 1 0 0 1 1 1 0 F plasmid transfer operon, TraF, protein CytB6-F_Fe-S PF08802.10 gi|336255592|ref|YP_004598699.1| - 1.5 8.9 3.2 6.7 6.8 0.2 2.3 2 0 0 2 2 2 0 Cytochrome B6-F complex Fe-S subunit Na_H_Exchanger PF00999.21 gi|336255593|ref|YP_004598700.1| - 3.9e-40 137.8 23.1 4.9e-40 137.5 23.1 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Pyr_redox_2 PF07992.14 gi|336255594|ref|YP_004598701.1| - 4.5e-20 72.1 3.4 2e-11 43.7 1.2 2.0 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|336255594|ref|YP_004598701.1| - 3.4e-15 56.1 0.1 4.8e-09 35.9 0.0 2.5 1 1 2 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|336255594|ref|YP_004598701.1| - 2e-12 47.4 0.7 6.7e-06 25.9 0.0 2.3 1 1 1 2 2 2 2 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|336255594|ref|YP_004598701.1| - 5.1e-11 41.9 0.1 4.3e-05 22.4 0.0 2.1 2 0 0 2 2 2 2 HI0933-like protein FAD_binding_3 PF01494.19 gi|336255594|ref|YP_004598701.1| - 7.2e-09 35.3 2.0 4.1e-06 26.3 0.1 2.1 1 1 1 2 2 2 2 FAD binding domain FAD_binding_2 PF00890.24 gi|336255594|ref|YP_004598701.1| - 7e-08 32.0 1.7 3.8e-06 26.3 0.4 2.8 1 1 2 3 3 3 1 FAD binding domain NAD_binding_9 PF13454.6 gi|336255594|ref|YP_004598701.1| - 2e-07 31.1 0.0 0.0012 18.8 0.0 2.4 2 0 0 2 2 2 2 FAD-NAD(P)-binding GIDA PF01134.22 gi|336255594|ref|YP_004598701.1| - 5.7e-07 29.0 0.1 2.5e-05 23.5 0.0 2.1 1 1 1 2 2 2 1 Glucose inhibited division protein A FAD_oxidored PF12831.7 gi|336255594|ref|YP_004598701.1| - 1.8e-05 24.3 1.1 4.3e-05 23.1 0.1 1.8 2 0 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|336255594|ref|YP_004598701.1| - 3.1e-05 24.1 0.0 7.3e-05 22.9 0.0 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 gi|336255594|ref|YP_004598701.1| - 4.2e-05 22.9 0.2 0.00014 21.2 0.0 1.8 2 1 0 2 2 2 1 Thi4 family Pyr_redox PF00070.27 gi|336255594|ref|YP_004598701.1| - 0.00013 22.5 0.3 0.0074 16.8 0.3 2.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase K_oxygenase PF13434.6 gi|336255594|ref|YP_004598701.1| - 0.0003 20.1 0.1 0.45 9.6 0.0 2.1 1 1 1 2 2 2 2 L-lysine 6-monooxygenase (NADPH-requiring) Amino_oxidase PF01593.24 gi|336255594|ref|YP_004598701.1| - 0.0036 16.7 0.0 0.0067 15.8 0.0 1.4 1 0 0 1 1 1 1 Flavin containing amine oxidoreductase Lycopene_cycl PF05834.12 gi|336255594|ref|YP_004598701.1| - 0.0038 16.3 0.0 0.0072 15.4 0.0 1.5 2 0 0 2 2 2 1 Lycopene cyclase protein AlaDh_PNT_C PF01262.21 gi|336255594|ref|YP_004598701.1| - 0.012 14.9 0.0 0.015 14.6 0.0 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.18 gi|336255594|ref|YP_004598701.1| - 0.014 15.3 0.0 0.02 14.8 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Trp_halogenase PF04820.14 gi|336255594|ref|YP_004598701.1| - 0.021 13.7 2.1 1.4 7.7 0.1 2.1 2 0 0 2 2 2 0 Tryptophan halogenase Leucyl-specific PF14795.6 gi|336255594|ref|YP_004598701.1| - 0.048 13.7 0.3 4.5 7.4 0.1 2.4 2 0 0 2 2 2 0 Leucine-tRNA synthetase-specific domain AFOR_C PF01314.18 gi|336255596|ref|YP_004598703.1| - 1.4e-75 254.7 0.3 2.7e-75 253.8 0.3 1.4 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.15 gi|336255596|ref|YP_004598703.1| - 1e-55 188.7 0.0 2.1e-55 187.6 0.0 1.5 2 0 0 2 2 2 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain Peptidase_M48 PF01435.18 gi|336255598|ref|YP_004598705.1| - 1.8e-24 86.6 0.8 4e-23 82.2 0.8 2.1 1 1 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|336255598|ref|YP_004598705.1| - 0.00099 18.4 0.0 0.0017 17.7 0.0 1.3 1 0 0 1 1 1 1 BlaR1 peptidase M56 DUF883 PF05957.13 gi|336255598|ref|YP_004598705.1| - 0.088 13.4 0.2 0.088 13.4 0.2 2.6 3 0 0 3 3 3 0 Bacterial protein of unknown function (DUF883) Phage_holin_3_6 PF07332.11 gi|336255598|ref|YP_004598705.1| - 9.3 6.3 19.9 0.18 11.9 4.4 2.5 2 1 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III DZR PF12773.7 gi|336255599|ref|YP_004598706.1| - 0.0078 16.2 9.0 0.26 11.4 9.3 2.4 1 1 0 1 1 1 1 Double zinc ribbon zf_UBZ PF18439.1 gi|336255599|ref|YP_004598706.1| - 0.028 14.0 8.3 1.7 8.3 0.1 4.0 4 0 0 4 4 4 0 Ubiquitin-Binding Zinc Finger ArfGap PF01412.18 gi|336255599|ref|YP_004598706.1| - 0.14 12.3 2.3 0.41 10.7 2.3 1.9 1 1 0 1 1 1 0 Putative GTPase activating protein for Arf TackOD1 PF18551.1 gi|336255599|ref|YP_004598706.1| - 0.18 11.5 0.5 0.18 11.5 0.5 2.3 2 1 0 2 2 2 0 Thaumarchaeal output domain 1 Zn_Tnp_IS1595 PF12760.7 gi|336255599|ref|YP_004598706.1| - 0.39 10.7 0.3 0.39 10.7 0.3 2.5 2 1 0 2 2 2 0 Transposase zinc-ribbon domain DUF3678 PF12435.8 gi|336255599|ref|YP_004598706.1| - 0.53 9.7 4.3 2.7 7.5 0.4 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3678) DnaJ_CXXCXGXG PF00684.19 gi|336255599|ref|YP_004598706.1| - 0.67 10.4 10.1 53 4.3 10.1 2.4 1 1 0 1 1 1 0 DnaJ central domain zinc-ribbons_6 PF07191.12 gi|336255599|ref|YP_004598706.1| - 0.99 9.4 8.1 2e+02 2.0 8.1 2.7 1 1 0 1 1 1 0 zinc-ribbons Auto_anti-p27 PF06677.12 gi|336255599|ref|YP_004598706.1| - 1.2 9.4 12.7 0.17 12.0 1.6 2.8 2 1 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Nudix_N_2 PF14803.6 gi|336255599|ref|YP_004598706.1| - 1.4 8.9 16.2 7.1 6.6 0.2 4.0 2 1 1 3 3 3 0 Nudix N-terminal zinc_ribbon_15 PF17032.5 gi|336255599|ref|YP_004598706.1| - 1.4 9.7 6.6 40 5.0 6.6 2.2 1 1 0 1 1 1 0 zinc-ribbon family HypA PF01155.19 gi|336255599|ref|YP_004598706.1| - 2 8.4 6.6 7.6 6.6 4.6 2.4 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TF_Zn_Ribbon PF08271.12 gi|336255599|ref|YP_004598706.1| - 5.6 6.6 13.5 0.4 10.2 3.1 2.9 2 1 0 2 2 2 0 TFIIB zinc-binding Acetyltransf_1 PF00583.25 gi|336255600|ref|YP_004598707.1| - 5.8e-08 33.0 0.1 9.5e-08 32.3 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_CG PF14542.6 gi|336255600|ref|YP_004598707.1| - 0.00011 22.2 0.0 0.00025 21.1 0.0 1.7 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_7 PF13508.7 gi|336255600|ref|YP_004598707.1| - 0.0015 18.9 0.0 0.0021 18.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|336255600|ref|YP_004598707.1| - 0.0016 19.1 0.0 0.0024 18.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|336255600|ref|YP_004598707.1| - 0.0064 16.4 0.0 0.011 15.7 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain MM_CoA_mutase PF01642.22 gi|336255601|ref|YP_004598708.1| - 1.6e-229 762.7 0.7 2e-229 762.4 0.7 1.0 1 0 0 1 1 1 1 Methylmalonyl-CoA mutase RsbRD_N PF14361.6 gi|336255601|ref|YP_004598708.1| - 4.8 7.9 5.7 3.4 8.4 1.8 2.4 2 0 0 2 2 2 0 RsbT co-antagonist protein rsbRD N-terminal domain GSDH PF07995.11 gi|336255602|ref|YP_004598709.1| - 4.2e-32 111.8 0.4 2.1e-31 109.5 0.2 2.0 2 0 0 2 2 2 1 Glucose / Sorbosone dehydrogenase Copper-bind PF00127.20 gi|336255602|ref|YP_004598709.1| - 5.5e-09 36.4 0.6 1.3e-08 35.2 0.0 1.9 2 0 0 2 2 2 1 Copper binding proteins, plastocyanin/azurin family NHL PF01436.21 gi|336255602|ref|YP_004598709.1| - 0.093 12.8 0.2 7 6.9 0.0 3.5 3 0 0 3 3 3 0 NHL repeat Aldo_ket_red PF00248.21 gi|336255603|ref|YP_004598710.1| - 1e-60 205.4 0.0 1.4e-58 198.5 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family Glyoxalase_4 PF13669.6 gi|336255604|ref|YP_004598711.1| - 1.2e-17 64.2 0.1 1.4e-17 63.9 0.1 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase PF00903.25 gi|336255604|ref|YP_004598711.1| - 1.1e-12 48.2 0.3 1.2e-12 48.1 0.3 1.0 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.6 gi|336255604|ref|YP_004598711.1| - 2e-07 31.3 1.3 2.3e-07 31.1 1.3 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_6 PF18029.1 gi|336255604|ref|YP_004598711.1| - 0.0098 16.7 0.2 0.013 16.3 0.2 1.2 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_2 PF12681.7 gi|336255604|ref|YP_004598711.1| - 0.21 11.5 0.0 0.27 11.2 0.0 1.4 1 1 0 1 1 1 0 Glyoxalase-like domain FAD_binding_6 PF00970.24 gi|336255605|ref|YP_004598712.1| - 1.3e-10 41.5 0.0 1.7e-10 41.1 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain PALP PF00291.25 gi|336255605|ref|YP_004598712.1| - 0.00094 18.7 0.2 0.0013 18.2 0.2 1.2 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Toprim_3 PF13362.6 gi|336255605|ref|YP_004598712.1| - 0.0059 16.9 1.3 0.011 16.0 1.3 1.5 1 0 0 1 1 1 1 Toprim domain ATPgrasp_N PF18130.1 gi|336255605|ref|YP_004598712.1| - 0.021 15.4 1.3 0.048 14.2 1.3 1.6 1 0 0 1 1 1 0 ATP-grasp N-terminal domain adh_short_C2 PF13561.6 gi|336255605|ref|YP_004598712.1| - 0.076 12.6 0.9 0.13 11.8 0.9 1.3 1 0 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase POR_N PF01855.19 gi|336255606|ref|YP_004598713.1| - 4.3e-58 196.8 0.2 6.9e-58 196.1 0.2 1.3 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.18 gi|336255606|ref|YP_004598713.1| - 1.2e-40 139.5 0.1 2.3e-40 138.5 0.1 1.5 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_N PF02776.18 gi|336255606|ref|YP_004598713.1| - 1.2e-06 28.2 0.1 2.4e-06 27.3 0.1 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PFOR_II PF17147.4 gi|336255606|ref|YP_004598713.1| - 0.044 14.1 0.0 0.1 12.9 0.0 1.7 1 0 0 1 1 1 0 Pyruvate:ferredoxin oxidoreductase core domain II Transketolase_C PF02780.20 gi|336255606|ref|YP_004598713.1| - 0.089 12.7 0.0 0.2 11.5 0.0 1.5 1 0 0 1 1 1 0 Transketolase, C-terminal domain TPP_enzyme_C PF02775.21 gi|336255607|ref|YP_004598714.1| - 1.4e-31 109.4 0.3 2.1e-31 108.8 0.3 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.8 gi|336255607|ref|YP_004598714.1| - 1e-19 70.4 1.5 2.3e-19 69.3 1.5 1.6 1 0 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal DUF5542 PF17696.1 gi|336255608|ref|YP_004598715.1| - 0.038 14.1 0.0 0.061 13.4 0.0 1.3 1 0 0 1 1 1 0 Family of unknown function (DUF5542) TAT_signal PF10518.9 gi|336255608|ref|YP_004598715.1| - 0.051 13.4 2.0 0.094 12.6 2.0 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Aminotran_1_2 PF00155.21 gi|336255609|ref|YP_004598716.1| - 1.3e-59 202.2 0.0 1.5e-59 202.0 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|336255609|ref|YP_004598716.1| - 3.2e-13 49.7 0.0 6.6e-13 48.7 0.0 1.4 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|336255609|ref|YP_004598716.1| - 4.7e-09 35.9 0.0 7.6e-09 35.3 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.19 gi|336255609|ref|YP_004598716.1| - 4.4e-07 29.2 0.0 5.9e-07 28.8 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|336255609|ref|YP_004598716.1| - 3.3e-06 25.9 0.0 4.2e-06 25.6 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_3 PF00202.21 gi|336255609|ref|YP_004598716.1| - 0.063 11.9 0.1 0.12 11.0 0.1 1.3 1 0 0 1 1 1 0 Aminotransferase class-III ADH_zinc_N_2 PF13602.6 gi|336255610|ref|YP_004598717.1| - 3.8e-19 70.0 0.1 7.2e-19 69.2 0.1 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N PF00107.26 gi|336255610|ref|YP_004598717.1| - 5.4e-12 45.8 0.2 1e-11 44.9 0.2 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.12 gi|336255610|ref|YP_004598717.1| - 5.7e-11 42.3 0.0 4.1e-09 36.3 0.0 2.3 1 1 1 2 2 2 2 Alcohol dehydrogenase GroES-like domain ADH_N_2 PF16884.5 gi|336255610|ref|YP_004598717.1| - 0.044 13.7 0.0 0.11 12.3 0.0 1.7 1 0 0 1 1 1 0 N-terminal domain of oxidoreductase FAD-oxidase_C PF02913.19 gi|336255612|ref|YP_004598719.1| - 1.1e-55 189.0 0.2 1.5e-55 188.6 0.2 1.2 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.23 gi|336255612|ref|YP_004598719.1| - 2.3e-40 137.5 0.1 3.8e-40 136.8 0.1 1.4 1 0 0 1 1 1 1 FAD binding domain Glyoxalase_6 PF18029.1 gi|336255612|ref|YP_004598719.1| - 0.024 15.4 0.3 0.086 13.6 0.3 2.0 1 0 0 1 1 1 0 Glyoxalase-like domain UCR_Fe-S_N PF10399.9 gi|336255613|ref|YP_004598720.1| - 0.11 11.9 0.2 0.19 11.1 0.2 1.4 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal TPP_enzyme_N PF02776.18 gi|336255614|ref|YP_004598721.1| - 3e-48 163.7 1.1 7.2e-48 162.4 0.2 2.1 3 0 0 3 3 3 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.21 gi|336255614|ref|YP_004598721.1| - 7.4e-24 84.3 0.0 4.5e-23 81.7 0.0 2.3 2 1 1 3 3 3 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|336255614|ref|YP_004598721.1| - 1.8e-17 63.3 0.1 4.4e-17 62.1 0.1 1.7 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain UbiA PF01040.18 gi|336255615|ref|YP_004598722.1| - 1.6e-08 34.2 31.7 2.6e-08 33.5 30.4 1.9 1 1 1 2 2 2 1 UbiA prenyltransferase family Acetyltransf_1 PF00583.25 gi|336255617|ref|YP_004598724.1| - 5e-15 55.8 0.1 5.8e-15 55.5 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.7 gi|336255617|ref|YP_004598724.1| - 3.5e-11 43.9 0.1 4e-11 43.8 0.1 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|336255617|ref|YP_004598724.1| - 3.3e-10 40.0 0.0 4.9e-10 39.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|336255617|ref|YP_004598724.1| - 5.4e-09 36.4 0.0 7.7e-09 35.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|336255617|ref|YP_004598724.1| - 7.8e-07 29.0 0.0 1.5e-06 28.0 0.0 1.5 1 1 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.6 gi|336255617|ref|YP_004598724.1| - 0.00046 19.9 0.2 0.0006 19.5 0.2 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|336255617|ref|YP_004598724.1| - 0.0026 17.8 0.0 0.0046 17.1 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_4 PF13420.7 gi|336255617|ref|YP_004598724.1| - 0.011 15.9 0.0 0.013 15.7 0.0 1.1 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|336255617|ref|YP_004598724.1| - 0.014 15.5 0.6 0.033 14.3 0.5 1.6 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain DUF1462 PF07315.11 gi|336255617|ref|YP_004598724.1| - 0.036 14.3 0.1 0.28 11.5 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1462) IMPa_N_2 PF18650.1 gi|336255617|ref|YP_004598724.1| - 0.19 11.0 0.0 0.26 10.5 0.0 1.1 1 0 0 1 1 1 0 Immunomodulating metalloprotease N-terminal domain MMR_HSR1_C PF08438.10 gi|336255618|ref|YP_004598725.1| - 5.1e-30 104.3 0.0 7.9e-30 103.7 0.0 1.3 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.23 gi|336255618|ref|YP_004598725.1| - 9.1e-20 70.9 0.0 6.5e-19 68.1 0.0 2.2 2 0 0 2 2 2 1 50S ribosome-binding GTPase TGS PF02824.21 gi|336255618|ref|YP_004598725.1| - 7e-13 48.4 0.0 1.6e-12 47.3 0.0 1.6 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.18 gi|336255618|ref|YP_004598725.1| - 5.3e-10 39.0 0.0 5.5e-07 29.2 0.0 3.2 3 0 0 3 3 3 1 Ferrous iron transport protein B GTP_EFTU PF00009.27 gi|336255618|ref|YP_004598725.1| - 0.02 14.4 0.1 0.54 9.8 0.0 2.8 3 0 0 3 3 3 0 Elongation factor Tu GTP binding domain DUF463 PF04317.12 gi|336255618|ref|YP_004598725.1| - 0.22 10.4 0.0 0.5 9.2 0.0 1.5 2 0 0 2 2 2 0 YcjX-like family, DUF463 DUF2267 PF10025.9 gi|336255619|ref|YP_004598726.1| - 8.2e-34 116.5 4.2 1e-33 116.2 4.2 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2267) Acetyltransf_1 PF00583.25 gi|336255620|ref|YP_004598727.1| - 3.6e-15 56.2 0.2 7.1e-15 55.3 0.2 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|336255620|ref|YP_004598727.1| - 3.2e-09 37.1 0.1 8.4e-09 35.7 0.0 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|336255620|ref|YP_004598727.1| - 3.4e-09 37.0 0.0 4.7e-09 36.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|336255620|ref|YP_004598727.1| - 7.4e-08 32.4 0.0 1.2e-07 31.7 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|336255620|ref|YP_004598727.1| - 1.2e-05 26.1 0.1 1.8e-05 25.4 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|336255620|ref|YP_004598727.1| - 0.004 17.3 0.0 0.0085 16.2 0.0 1.6 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.7 gi|336255620|ref|YP_004598727.1| - 0.025 14.6 0.0 0.057 13.5 0.0 1.7 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain DUF3267 PF11667.8 gi|336255621|ref|YP_004598728.1| - 0.011 16.0 0.7 0.031 14.6 0.7 1.7 1 1 0 1 1 1 0 Putative zincin peptidase HTH_10 PF04967.12 gi|336255622|ref|YP_004598729.1| - 1.6e-19 69.4 0.2 2.9e-19 68.6 0.2 1.4 1 0 0 1 1 1 1 HTH DNA binding domain MarR_2 PF12802.7 gi|336255622|ref|YP_004598729.1| - 0.00086 19.1 0.2 0.0039 17.1 0.0 2.2 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.7 gi|336255622|ref|YP_004598729.1| - 0.0019 18.2 0.0 0.061 13.4 0.0 2.7 2 0 0 2 2 2 1 Helix-turn-helix domain Sigma70_r3 PF04539.16 gi|336255622|ref|YP_004598729.1| - 0.013 15.6 0.2 0.53 10.4 0.1 2.5 2 0 0 2 2 2 0 Sigma-70 region 3 HTH_24 PF13412.6 gi|336255622|ref|YP_004598729.1| - 0.016 14.7 0.1 0.051 13.1 0.1 1.9 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_3 PF01381.22 gi|336255622|ref|YP_004598729.1| - 0.033 14.2 0.0 0.09 12.9 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix HTH_AsnC-type PF13404.6 gi|336255622|ref|YP_004598729.1| - 0.04 13.8 1.2 0.13 12.1 0.2 2.5 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain Sigma70_r4 PF04545.16 gi|336255622|ref|YP_004598729.1| - 0.088 12.3 0.0 0.22 11.1 0.0 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 UPF0122 PF04297.14 gi|336255622|ref|YP_004598729.1| - 0.11 12.7 0.4 1.3 9.3 0.0 2.3 2 1 1 3 3 2 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_50 PF18024.1 gi|336255622|ref|YP_004598729.1| - 0.12 12.0 0.0 0.66 9.6 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain Phage_CI_repr PF07022.13 gi|336255622|ref|YP_004598729.1| - 0.13 12.4 0.1 0.38 10.9 0.0 1.7 2 0 0 2 2 2 0 Bacteriophage CI repressor helix-turn-helix domain HTH_11 PF08279.12 gi|336255622|ref|YP_004598729.1| - 0.14 12.1 0.4 0.83 9.7 0.1 2.5 2 1 0 2 2 2 0 HTH domain RecC_C PF17946.1 gi|336255623|ref|YP_004598730.1| - 0.097 12.4 0.0 0.12 12.1 0.0 1.1 1 0 0 1 1 1 0 RecC C-terminal domain DUF1385 PF07136.11 gi|336255624|ref|YP_004598731.1| - 0.12 11.6 0.0 0.13 11.5 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1385) Phage_integrase PF00589.22 gi|336255627|ref|YP_004598734.1| - 8.9e-09 35.4 0.0 4.4e-08 33.1 0.0 2.3 3 1 0 3 3 3 1 Phage integrase family Phage_int_SAM_1 PF02899.17 gi|336255627|ref|YP_004598734.1| - 3.5e-08 33.6 0.1 8e-08 32.5 0.1 1.6 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 gi|336255627|ref|YP_004598734.1| - 0.00036 20.9 0.1 0.02 15.4 0.1 2.5 1 1 1 2 2 2 2 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 gi|336255627|ref|YP_004598734.1| - 0.097 13.0 0.0 0.26 11.7 0.0 1.8 1 1 0 1 1 1 0 Phage integrase SAM-like domain HTH_40 PF14493.6 gi|336255627|ref|YP_004598734.1| - 0.17 12.4 0.0 0.47 10.9 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain PadR PF03551.14 gi|336255628|ref|YP_004598735.1| - 4.7e-12 45.7 0.7 1.1e-11 44.6 0.7 1.5 1 1 1 2 2 2 1 Transcriptional regulator PadR-like family DUF1495 PF07381.11 gi|336255628|ref|YP_004598735.1| - 0.0016 18.2 0.0 0.0022 17.8 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) HTH_45 PF14947.6 gi|336255628|ref|YP_004598735.1| - 0.0047 16.9 0.0 0.0078 16.2 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix FUR PF01475.19 gi|336255628|ref|YP_004598735.1| - 0.028 14.6 0.0 0.037 14.2 0.0 1.3 1 0 0 1 1 1 0 Ferric uptake regulator family MarR_2 PF12802.7 gi|336255628|ref|YP_004598735.1| - 0.032 14.1 1.1 0.33 10.9 0.1 2.6 2 1 1 3 3 3 0 MarR family HxlR PF01638.17 gi|336255628|ref|YP_004598735.1| - 0.057 13.3 0.0 0.081 12.8 0.0 1.2 1 0 0 1 1 1 0 HxlR-like helix-turn-helix HTH_27 PF13463.6 gi|336255628|ref|YP_004598735.1| - 0.058 13.9 0.0 0.13 12.8 0.0 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain TrmB PF01978.19 gi|336255628|ref|YP_004598735.1| - 0.066 13.1 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB OST-HTH PF12872.7 gi|336255629|ref|YP_004598736.1| - 0.035 13.9 0.0 0.074 12.9 0.0 1.5 2 0 0 2 2 2 0 OST-HTH/LOTUS domain AAA_16 PF13191.6 gi|336255631|ref|YP_004598738.1| - 4.8e-12 46.6 5.3 6.2e-11 43.0 0.0 3.2 2 1 1 3 3 3 1 AAA ATPase domain AAA_22 PF13401.6 gi|336255631|ref|YP_004598738.1| - 8.7e-11 42.3 0.1 6.1e-10 39.5 0.0 2.2 1 1 2 3 3 3 1 AAA domain AAA PF00004.29 gi|336255631|ref|YP_004598738.1| - 3.4e-07 30.7 0.1 2.2e-06 28.1 0.1 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_assoc_2 PF16193.5 gi|336255631|ref|YP_004598738.1| - 1.2e-06 28.8 0.3 4.3e-06 27.0 0.3 2.0 1 1 0 1 1 1 1 AAA C-terminal domain Sigma54_activat PF00158.26 gi|336255631|ref|YP_004598738.1| - 3.9e-05 23.4 0.0 7.2e-05 22.6 0.0 1.5 1 0 0 1 1 1 1 Sigma-54 interaction domain ATPase_2 PF01637.18 gi|336255631|ref|YP_004598738.1| - 5.5e-05 23.2 0.1 0.003 17.5 0.0 2.4 2 0 0 2 2 2 1 ATPase domain predominantly from Archaea AAA_33 PF13671.6 gi|336255631|ref|YP_004598738.1| - 9.4e-05 22.6 0.6 0.0019 18.4 0.0 2.8 2 1 0 2 2 2 1 AAA domain AAA_5 PF07728.14 gi|336255631|ref|YP_004598738.1| - 0.00011 22.1 0.1 0.00033 20.7 0.0 1.9 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) DUF815 PF05673.13 gi|336255631|ref|YP_004598738.1| - 0.00012 21.4 0.0 0.00054 19.2 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF815) Bac_DnaA PF00308.18 gi|336255631|ref|YP_004598738.1| - 0.00017 21.5 0.1 0.001 19.0 0.1 2.0 1 1 0 1 1 1 1 Bacterial dnaA protein NACHT PF05729.12 gi|336255631|ref|YP_004598738.1| - 0.00038 20.4 0.0 0.00061 19.7 0.0 1.4 1 0 0 1 1 1 1 NACHT domain ABC_tran PF00005.27 gi|336255631|ref|YP_004598738.1| - 0.00055 20.5 0.0 0.0013 19.3 0.0 1.9 1 1 0 1 1 1 1 ABC transporter AAA_18 PF13238.6 gi|336255631|ref|YP_004598738.1| - 0.00061 20.3 0.3 0.0033 18.0 0.0 2.3 2 1 0 2 2 2 1 AAA domain IstB_IS21 PF01695.17 gi|336255631|ref|YP_004598738.1| - 0.0016 18.2 0.4 0.0072 16.1 0.0 2.2 3 0 0 3 3 2 1 IstB-like ATP binding protein TsaE PF02367.17 gi|336255631|ref|YP_004598738.1| - 0.0023 17.9 0.0 0.038 14.0 0.0 2.3 2 0 0 2 2 2 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE NTPase_1 PF03266.15 gi|336255631|ref|YP_004598738.1| - 0.0026 17.7 0.1 0.053 13.4 0.0 2.3 2 0 0 2 2 2 1 NTPase NB-ARC PF00931.22 gi|336255631|ref|YP_004598738.1| - 0.0038 16.5 0.0 0.0073 15.5 0.0 1.6 2 0 0 2 2 2 1 NB-ARC domain AAA_7 PF12775.7 gi|336255631|ref|YP_004598738.1| - 0.0047 16.5 0.0 0.0091 15.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing dynein motor region TIP49 PF06068.13 gi|336255631|ref|YP_004598738.1| - 0.0054 16.0 0.0 0.013 14.7 0.0 1.7 1 1 0 1 1 1 1 TIP49 P-loop domain RNA_helicase PF00910.22 gi|336255631|ref|YP_004598738.1| - 0.0055 17.1 0.0 0.0097 16.3 0.0 1.5 1 0 0 1 1 1 1 RNA helicase AAA_24 PF13479.6 gi|336255631|ref|YP_004598738.1| - 0.0065 16.2 0.1 0.023 14.4 0.0 1.9 2 0 0 2 2 2 1 AAA domain RuvB_N PF05496.12 gi|336255631|ref|YP_004598738.1| - 0.0072 16.1 0.1 0.039 13.7 0.0 2.1 2 1 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_30 PF13604.6 gi|336255631|ref|YP_004598738.1| - 0.012 15.3 0.0 0.034 13.9 0.0 1.8 1 1 0 1 1 1 0 AAA domain PEPCK_ATP PF01293.20 gi|336255631|ref|YP_004598738.1| - 0.022 13.4 0.0 0.034 12.8 0.0 1.2 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxykinase Mannitol_dh PF01232.23 gi|336255631|ref|YP_004598738.1| - 0.025 14.7 0.0 0.052 13.7 0.0 1.5 1 0 0 1 1 1 0 Mannitol dehydrogenase Rossmann domain AAA_29 PF13555.6 gi|336255631|ref|YP_004598738.1| - 0.032 14.0 0.1 0.063 13.0 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_17 PF13207.6 gi|336255631|ref|YP_004598738.1| - 0.033 14.6 1.8 0.2 12.1 0.4 2.7 2 1 0 2 2 2 0 AAA domain ATPase PF06745.13 gi|336255631|ref|YP_004598738.1| - 0.041 13.2 0.3 0.12 11.7 0.1 1.9 1 1 1 2 2 2 0 KaiC AAA_19 PF13245.6 gi|336255631|ref|YP_004598738.1| - 0.048 14.0 0.6 0.3 11.4 0.5 2.3 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|336255631|ref|YP_004598738.1| - 0.049 14.1 0.0 0.12 12.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|336255631|ref|YP_004598738.1| - 0.052 13.4 0.0 0.24 11.3 0.0 1.9 2 0 0 2 2 2 0 RsgA GTPase TniB PF05621.11 gi|336255631|ref|YP_004598738.1| - 0.056 12.9 0.2 0.21 11.0 0.0 2.1 2 1 0 2 2 1 0 Bacterial TniB protein AAA_28 PF13521.6 gi|336255631|ref|YP_004598738.1| - 0.064 13.5 0.0 0.14 12.4 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|336255631|ref|YP_004598738.1| - 0.065 13.3 0.1 0.18 11.8 0.1 1.8 1 1 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.25 gi|336255631|ref|YP_004598738.1| - 0.066 12.9 0.0 0.15 11.6 0.0 1.6 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain HrpB1_HrpK PF09613.10 gi|336255631|ref|YP_004598738.1| - 0.094 12.4 0.2 0.36 10.5 0.1 2.0 2 0 0 2 2 2 0 Bacterial type III secretion protein (HrpB1_HrpK) Mg_chelatase PF01078.21 gi|336255631|ref|YP_004598738.1| - 0.095 12.1 0.0 0.18 11.2 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI PduV-EutP PF10662.9 gi|336255631|ref|YP_004598738.1| - 0.11 12.2 0.0 0.97 9.2 0.0 2.2 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_13 PF13166.6 gi|336255631|ref|YP_004598738.1| - 0.18 10.4 0.0 0.28 9.8 0.0 1.2 1 0 0 1 1 1 0 AAA domain Vps36_ESCRT-II PF11605.8 gi|336255633|ref|YP_004598740.1| - 0.00011 22.4 0.0 0.00016 21.8 0.0 1.2 1 0 0 1 1 1 1 Vacuolar protein sorting protein 36 Vps36 FixQ PF05545.11 gi|336255633|ref|YP_004598740.1| - 0.46 10.5 0.1 0.46 10.5 0.1 2.2 3 0 0 3 3 3 0 Cbb3-type cytochrome oxidase component FixQ T4_Rnl2_C PF18043.1 gi|336255639|ref|YP_004598746.1| - 0.021 15.0 0.2 0.048 13.8 0.0 1.7 2 0 0 2 2 2 0 T4 RNA ligase 2 C-terminal PAP2 PF01569.21 gi|336255640|ref|YP_004598747.1| - 4.2e-14 52.5 11.1 2.7e-12 46.6 11.1 2.2 1 1 0 1 1 1 1 PAP2 superfamily PAP2_3 PF14378.6 gi|336255640|ref|YP_004598747.1| - 2.8e-07 30.4 7.6 2.8e-07 30.4 7.6 1.5 1 1 0 1 1 1 1 PAP2 superfamily PAP2_C PF14360.6 gi|336255640|ref|YP_004598747.1| - 0.043 14.3 1.1 0.043 14.3 1.1 1.7 2 0 0 2 2 2 0 PAP2 superfamily C-terminal Sigma54_activ_2 PF14532.6 gi|336255641|ref|YP_004598748.1| - 0.011 15.8 0.0 0.021 15.0 0.0 1.3 1 0 0 1 1 1 0 Sigma-54 interaction domain HTH_28 PF13518.6 gi|336255641|ref|YP_004598748.1| - 0.04 14.0 0.0 0.089 12.9 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain N6_N4_Mtase PF01555.18 gi|336255643|ref|YP_004598750.1| - 6.9e-47 160.1 5.6 9.2e-45 153.1 5.6 2.4 1 1 0 1 1 1 1 DNA methylase Mrr_cat PF04471.12 gi|336255643|ref|YP_004598750.1| - 1.5e-05 25.0 0.0 4e-05 23.6 0.0 1.8 2 0 0 2 2 2 1 Restriction endonuclease MethyltransfD12 PF02086.15 gi|336255643|ref|YP_004598750.1| - 0.0021 17.8 1.2 0.19 11.4 0.1 2.9 3 1 1 4 4 4 1 D12 class N6 adenine-specific DNA methyltransferase Methyltransf_31 PF13847.6 gi|336255643|ref|YP_004598750.1| - 0.0024 17.7 0.1 0.032 14.0 0.0 2.3 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|336255643|ref|YP_004598750.1| - 0.005 17.5 0.0 0.057 14.1 0.0 2.5 2 0 0 2 2 2 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|336255643|ref|YP_004598750.1| - 0.0072 16.0 0.1 0.029 14.0 0.0 1.9 2 0 0 2 2 2 1 Conserved hypothetical protein 95 UPF0020 PF01170.18 gi|336255643|ref|YP_004598750.1| - 0.047 13.4 0.0 0.089 12.5 0.0 1.4 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 Methyltransf_11 PF08241.12 gi|336255643|ref|YP_004598750.1| - 0.17 12.5 0.0 40 4.9 0.0 2.7 2 0 0 2 2 2 0 Methyltransferase domain HTH_38 PF13936.6 gi|336255646|ref|YP_004598753.1| - 0.001 18.8 0.0 0.0022 17.7 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_17 PF12728.7 gi|336255646|ref|YP_004598753.1| - 0.0029 17.8 0.1 0.031 14.5 0.0 2.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_29 PF13551.6 gi|336255646|ref|YP_004598753.1| - 0.0046 16.9 0.0 0.016 15.3 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn helix HTH_23 PF13384.6 gi|336255646|ref|YP_004598753.1| - 0.0086 15.8 0.0 0.027 14.2 0.0 1.8 1 0 0 1 1 1 1 Homeodomain-like domain HTH_IclR PF09339.10 gi|336255646|ref|YP_004598753.1| - 0.05 13.4 0.0 0.12 12.1 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_11 PF08279.12 gi|336255646|ref|YP_004598753.1| - 0.059 13.3 0.0 0.13 12.3 0.0 1.5 1 0 0 1 1 1 0 HTH domain HTH_36 PF13730.6 gi|336255646|ref|YP_004598753.1| - 0.16 12.0 0.0 0.36 10.8 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain TackOD1 PF18551.1 gi|336255647|ref|YP_004598754.1| - 0.022 14.4 0.2 0.028 14.1 0.2 1.0 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 DUF488 PF04343.13 gi|336255648|ref|YP_004598755.1| - 3.7e-07 30.8 0.7 7e-07 29.9 0.7 1.5 1 1 0 1 1 1 1 Protein of unknown function, DUF488 MethyltransfD12 PF02086.15 gi|336255649|ref|YP_004598756.1| - 7.6e-20 71.7 0.0 1e-19 71.3 0.0 1.2 1 0 0 1 1 1 1 D12 class N6 adenine-specific DNA methyltransferase DUF3268 PF11672.8 gi|336255651|ref|YP_004598758.1| - 0.0041 17.4 0.2 0.0049 17.2 0.2 1.1 1 0 0 1 1 1 1 zinc-finger-containing domain DZR PF12773.7 gi|336255651|ref|YP_004598758.1| - 0.012 15.7 0.4 0.018 15.0 0.4 1.3 1 0 0 1 1 1 0 Double zinc ribbon C1_1 PF00130.22 gi|336255651|ref|YP_004598758.1| - 0.012 15.5 0.3 0.018 14.9 0.3 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) OrfB_Zn_ribbon PF07282.11 gi|336255651|ref|YP_004598758.1| - 0.044 13.7 1.2 0.068 13.1 0.8 1.5 2 0 0 2 2 2 0 Putative transposase DNA-binding domain Nudix_N_2 PF14803.6 gi|336255651|ref|YP_004598758.1| - 0.058 13.3 3.5 0.12 12.3 3.5 1.5 1 0 0 1 1 1 0 Nudix N-terminal zf-ribbon_3 PF13248.6 gi|336255651|ref|YP_004598758.1| - 0.059 12.8 0.9 1.5 8.3 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|336255651|ref|YP_004598758.1| - 0.075 13.0 1.7 0.11 12.5 1.7 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|336255651|ref|YP_004598758.1| - 0.57 10.3 4.3 3.6 7.8 0.5 2.1 1 1 2 3 3 3 0 Zinc ribbon domain zf-LITAF-like PF10601.9 gi|336255651|ref|YP_004598758.1| - 1.1 9.6 4.4 9.9 6.5 0.4 2.1 1 1 1 2 2 2 0 LITAF-like zinc ribbon domain AF-4 PF05110.13 gi|336255652|ref|YP_004598759.1| - 2.4 6.1 9.4 3 5.8 9.4 1.0 1 0 0 1 1 1 0 AF-4 proto-oncoprotein HalOD1 PF18545.1 gi|336255653|ref|YP_004598760.1| - 9.5e-24 83.5 1.1 1.5e-23 82.9 1.1 1.3 1 0 0 1 1 1 1 Halobacterial output domain 1 BAT PF15915.5 gi|336255654|ref|YP_004598761.1| - 3.1e-21 75.9 6.2 3.1e-21 75.9 6.2 1.6 2 0 0 2 2 2 1 GAF and HTH_10 associated domain HTH_10 PF04967.12 gi|336255654|ref|YP_004598761.1| - 1.4e-19 69.6 0.0 2.7e-19 68.7 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain PAS_4 PF08448.10 gi|336255654|ref|YP_004598761.1| - 1.5e-10 41.3 0.1 4.4e-10 39.8 0.1 1.9 1 0 0 1 1 1 1 PAS fold PAS PF00989.25 gi|336255654|ref|YP_004598761.1| - 7.5e-09 35.6 0.0 2.2e-08 34.1 0.0 1.8 1 1 0 1 1 1 1 PAS fold PAS_9 PF13426.7 gi|336255654|ref|YP_004598761.1| - 9.2e-08 32.3 0.0 2e-07 31.2 0.0 1.6 1 0 0 1 1 1 1 PAS domain PAS_8 PF13188.7 gi|336255654|ref|YP_004598761.1| - 0.0002 21.3 0.0 0.00066 19.6 0.0 1.9 1 0 0 1 1 1 1 PAS domain MarR_2 PF12802.7 gi|336255654|ref|YP_004598761.1| - 0.0019 18.0 0.2 0.042 13.7 0.0 2.5 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.6 gi|336255654|ref|YP_004598761.1| - 0.0082 15.7 0.0 0.062 12.9 0.0 2.3 3 0 0 3 3 3 1 Winged helix-turn-helix DNA-binding UPF0122 PF04297.14 gi|336255654|ref|YP_004598761.1| - 0.0096 16.1 0.0 0.02 15.1 0.0 1.5 1 0 0 1 1 1 1 Putative helix-turn-helix protein, YlxM / p13 like HTH_20 PF12840.7 gi|336255654|ref|YP_004598761.1| - 0.018 15.1 0.5 0.29 11.2 0.0 3.0 4 0 0 4 4 4 0 Helix-turn-helix domain HTH_11 PF08279.12 gi|336255654|ref|YP_004598761.1| - 0.024 14.6 0.0 0.058 13.4 0.0 1.6 1 0 0 1 1 1 0 HTH domain HTH_Crp_2 PF13545.6 gi|336255654|ref|YP_004598761.1| - 0.027 14.5 0.0 0.067 13.2 0.0 1.7 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain PAS_3 PF08447.12 gi|336255654|ref|YP_004598761.1| - 0.033 14.5 0.0 0.095 13.0 0.0 1.9 2 0 0 2 2 2 0 PAS fold FmdA_AmdA PF03069.15 gi|336255655|ref|YP_004598762.1| - 5.1e-67 226.3 0.0 8.6e-33 113.7 0.0 2.0 1 1 1 2 2 2 2 Acetamidase/Formamidase family IMPDH PF00478.25 gi|336255656|ref|YP_004598763.1| - 2.1e-140 467.6 5.8 2.4e-140 467.5 5.8 1.0 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain CBS PF00571.28 gi|336255656|ref|YP_004598763.1| - 2.3e-23 82.4 3.7 1.1e-10 41.8 0.3 2.9 2 0 0 2 2 2 2 CBS domain NMO PF03060.15 gi|336255656|ref|YP_004598763.1| - 2.3e-14 53.5 1.3 1.3e-07 31.4 0.3 2.2 2 0 0 2 2 2 2 Nitronate monooxygenase FMN_dh PF01070.18 gi|336255656|ref|YP_004598763.1| - 9.3e-10 38.0 2.8 1.6e-09 37.3 2.8 1.4 1 0 0 1 1 1 1 FMN-dependent dehydrogenase Glu_synthase PF01645.17 gi|336255656|ref|YP_004598763.1| - 2e-05 23.9 5.5 7.6e-05 22.0 4.7 2.0 2 0 0 2 2 2 1 Conserved region in glutamate synthase ThiG PF05690.14 gi|336255656|ref|YP_004598763.1| - 0.00014 21.2 1.7 0.00014 21.2 1.7 2.3 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG His_biosynth PF00977.21 gi|336255656|ref|YP_004598763.1| - 0.0002 20.9 2.5 0.00044 19.8 2.5 1.5 1 0 0 1 1 1 1 Histidine biosynthesis protein DHO_dh PF01180.21 gi|336255656|ref|YP_004598763.1| - 0.00021 20.6 1.3 0.00036 19.8 1.3 1.4 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase Dus PF01207.17 gi|336255656|ref|YP_004598763.1| - 0.0024 17.0 0.1 0.0046 16.1 0.1 1.4 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) G3P_antiterm PF04309.12 gi|336255656|ref|YP_004598763.1| - 0.08 12.4 0.5 0.2 11.0 0.2 1.8 2 0 0 2 2 2 0 Glycerol-3-phosphate responsive antiterminator AAA_18 PF13238.6 gi|336255658|ref|YP_004598765.1| - 1.9e-20 73.7 0.0 2.5e-20 73.4 0.0 1.1 1 0 0 1 1 1 1 AAA domain Cytidylate_kin2 PF13189.6 gi|336255658|ref|YP_004598765.1| - 4.4e-20 72.5 0.1 5.3e-19 69.0 0.1 2.0 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_17 PF13207.6 gi|336255658|ref|YP_004598765.1| - 2.6e-12 47.3 0.0 5.8e-12 46.2 0.0 1.5 1 1 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.18 gi|336255658|ref|YP_004598765.1| - 5.2e-07 29.6 0.1 0.0005 19.9 0.0 2.1 1 1 1 2 2 2 2 Cytidylate kinase AAA_28 PF13521.6 gi|336255658|ref|YP_004598765.1| - 1.3e-06 28.7 0.1 3e-06 27.6 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|336255658|ref|YP_004598765.1| - 2.1e-06 28.0 0.0 3.8e-06 27.1 0.0 1.4 1 1 0 1 1 1 1 AAA domain ADK PF00406.22 gi|336255658|ref|YP_004598765.1| - 1.5e-05 25.1 0.1 6.3e-05 23.1 0.1 2.0 1 1 0 1 1 1 1 Adenylate kinase AAA PF00004.29 gi|336255658|ref|YP_004598765.1| - 9.6e-05 22.8 0.0 0.00018 21.9 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) CoaE PF01121.20 gi|336255658|ref|YP_004598765.1| - 0.00038 20.2 0.0 0.2 11.3 0.0 2.1 2 0 0 2 2 2 2 Dephospho-CoA kinase dNK PF01712.19 gi|336255658|ref|YP_004598765.1| - 0.0053 16.6 0.0 1.8 8.4 0.0 2.2 1 1 1 2 2 2 2 Deoxynucleoside kinase AAA_22 PF13401.6 gi|336255658|ref|YP_004598765.1| - 0.019 15.2 0.1 0.034 14.4 0.1 1.5 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|336255658|ref|YP_004598765.1| - 0.023 15.1 0.3 0.074 13.4 0.3 2.0 1 1 0 1 1 1 0 AAA ATPase domain SKI PF01202.22 gi|336255658|ref|YP_004598765.1| - 0.023 14.8 0.1 0.28 11.3 0.1 2.1 1 1 0 1 1 1 0 Shikimate kinase PRK PF00485.18 gi|336255658|ref|YP_004598765.1| - 0.033 13.9 0.0 0.33 10.6 0.0 2.1 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family AAA_5 PF07728.14 gi|336255658|ref|YP_004598765.1| - 0.053 13.5 0.0 0.13 12.2 0.0 1.7 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) NACHT PF05729.12 gi|336255658|ref|YP_004598765.1| - 0.1 12.5 0.0 0.42 10.5 0.0 1.8 1 1 0 2 2 2 0 NACHT domain RNA_helicase PF00910.22 gi|336255658|ref|YP_004598765.1| - 0.15 12.5 0.0 0.23 11.9 0.0 1.3 1 0 0 1 1 1 0 RNA helicase NTPase_1 PF03266.15 gi|336255658|ref|YP_004598765.1| - 0.17 11.8 0.0 0.32 10.9 0.0 1.4 1 0 0 1 1 1 0 NTPase Rad17 PF03215.15 gi|336255658|ref|YP_004598765.1| - 0.22 11.4 0.0 0.32 10.9 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain Membralin PF09746.9 gi|336255659|ref|YP_004598766.1| - 0.03 13.4 0.0 0.034 13.2 0.0 1.1 1 0 0 1 1 1 0 Tumour-associated protein TAT_signal PF10518.9 gi|336255659|ref|YP_004598766.1| - 0.12 12.2 0.3 0.19 11.6 0.3 1.3 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence YcaO PF02624.16 gi|336255660|ref|YP_004598767.1| - 3.2e-51 174.5 8.2 4.5e-51 174.0 8.2 1.2 1 0 0 1 1 1 1 YcaO cyclodehydratase, ATP-ad Mg2+-binding Na_Ca_ex PF01699.24 gi|336255661|ref|YP_004598768.1| - 9.5e-47 158.7 31.9 1e-26 93.7 12.1 2.0 2 0 0 2 2 2 2 Sodium/calcium exchanger protein LysE PF01810.18 gi|336255661|ref|YP_004598768.1| - 0.0015 18.1 11.7 0.057 12.9 4.1 2.6 2 0 0 2 2 2 2 LysE type translocator DUF4260 PF14079.6 gi|336255661|ref|YP_004598768.1| - 0.02 14.8 2.3 0.3 11.0 0.3 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4260) Band_7 PF01145.25 gi|336255662|ref|YP_004598769.1| - 3.6e-37 128.1 2.2 3.6e-37 128.1 2.2 2.1 2 1 0 2 2 2 1 SPFH domain / Band 7 family Band_7_1 PF13421.6 gi|336255662|ref|YP_004598769.1| - 0.017 14.9 0.1 0.032 13.9 0.1 1.5 1 0 0 1 1 1 0 SPFH domain-Band 7 family Na_H_Exchanger PF00999.21 gi|336255663|ref|YP_004598770.1| - 3.5e-59 200.5 50.4 3.9e-59 200.4 50.4 1.0 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family MatE PF01554.18 gi|336255664|ref|YP_004598771.1| - 6.7e-58 194.9 39.9 1.5e-34 119.0 15.3 2.6 3 1 0 3 3 3 2 MatE Polysacc_synt_C PF14667.6 gi|336255664|ref|YP_004598771.1| - 3.8e-08 33.5 14.5 3.8e-08 33.5 14.5 3.8 4 1 0 4 4 4 2 Polysaccharide biosynthesis C-terminal domain YniB PF14002.6 gi|336255664|ref|YP_004598771.1| - 0.16 11.7 0.1 0.16 11.7 0.1 1.9 2 0 0 2 2 2 0 YniB-like protein Pmp3 PF01679.17 gi|336255664|ref|YP_004598771.1| - 1 9.6 0.0 1 9.6 0.0 3.8 5 0 0 5 5 5 0 Proteolipid membrane potential modulator TetR_C_6 PF13977.6 gi|336255665|ref|YP_004598772.1| - 2.3e-20 73.0 4.6 2.3e-20 73.0 4.6 1.9 2 0 0 2 2 2 1 BetI-type transcriptional repressor, C-terminal TetR_N PF00440.23 gi|336255665|ref|YP_004598772.1| - 1.8e-13 50.0 0.1 3.1e-13 49.3 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_24 PF17932.1 gi|336255665|ref|YP_004598772.1| - 1.9e-07 31.4 0.8 5.1e-07 30.0 0.1 2.0 2 1 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_11 PF16859.5 gi|336255665|ref|YP_004598772.1| - 0.00024 21.4 4.4 0.00024 21.4 4.4 2.3 1 1 1 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_13 PF16925.5 gi|336255665|ref|YP_004598772.1| - 0.00045 20.1 0.0 0.0022 17.9 0.0 2.1 1 1 1 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_27 PF17935.1 gi|336255665|ref|YP_004598772.1| - 0.00075 19.5 1.8 0.0025 17.8 0.9 2.4 2 1 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_17 PF17922.1 gi|336255665|ref|YP_004598772.1| - 0.00087 19.3 0.0 0.0022 18.1 0.0 1.7 1 1 1 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_25 PF17933.1 gi|336255665|ref|YP_004598772.1| - 0.00092 19.5 0.3 0.0047 17.2 0.1 2.1 2 1 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain Gluconate_2-dh3 PF13618.6 gi|336255665|ref|YP_004598772.1| - 0.0046 17.2 1.6 0.034 14.4 0.6 2.2 1 1 1 2 2 2 1 Gluconate 2-dehydrogenase subunit 3 TetR_C_4 PF08359.11 gi|336255665|ref|YP_004598772.1| - 0.026 14.7 0.0 0.043 14.0 0.0 1.3 1 0 0 1 1 1 0 YsiA-like protein, C-terminal region TetR_C_29 PF17938.1 gi|336255665|ref|YP_004598772.1| - 0.028 14.5 0.0 0.052 13.6 0.0 1.6 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain Acetyltransf_6 PF13480.7 gi|336255665|ref|YP_004598772.1| - 1.8 8.7 8.4 0.32 11.1 0.3 2.5 2 1 0 3 3 3 0 Acetyltransferase (GNAT) domain RNA_binding PF01877.17 gi|336255666|ref|YP_004598773.1| - 1.2e-34 119.1 0.2 1.9e-34 118.5 0.0 1.4 2 0 0 2 2 2 1 RNA binding Get5_C PF18514.1 gi|336255666|ref|YP_004598773.1| - 0.15 11.8 1.0 13 5.6 0.1 2.3 2 0 0 2 2 2 0 Get5 C-terminal domain DUF1918 PF08940.11 gi|336255667|ref|YP_004598774.1| - 0.05 13.2 0.1 0.063 12.9 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1918) LBR_tudor PF09465.10 gi|336255667|ref|YP_004598774.1| - 0.11 12.3 0.1 0.21 11.4 0.0 1.6 2 0 0 2 2 2 0 Lamin-B receptor of TUDOR domain Tudor_3 PF18115.1 gi|336255667|ref|YP_004598774.1| - 0.18 11.7 0.0 0.26 11.2 0.0 1.4 1 1 0 1 1 1 0 DNA repair protein Crb2 Tudor domain NTP_transf_2 PF01909.23 gi|336255668|ref|YP_004598775.1| - 3e-10 40.2 0.1 4.9e-10 39.6 0.1 1.4 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|336255668|ref|YP_004598775.1| - 1.3e-07 31.6 0.0 2.3e-07 30.8 0.0 1.4 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase DNA_pol_B_palm PF14792.6 gi|336255668|ref|YP_004598775.1| - 0.042 14.1 0.0 0.066 13.4 0.0 1.3 1 0 0 1 1 1 0 DNA polymerase beta palm MarR_2 PF12802.7 gi|336255668|ref|YP_004598775.1| - 0.045 13.7 0.1 8.9 6.3 0.0 2.4 2 0 0 2 2 2 0 MarR family DUF294 PF03445.13 gi|336255668|ref|YP_004598775.1| - 0.067 13.0 0.1 0.21 11.4 0.1 1.8 1 1 0 1 1 1 0 Putative nucleotidyltransferase DUF294 CTP_transf_like PF01467.26 gi|336255670|ref|YP_004598777.1| - 8.7e-14 51.9 0.0 1.1e-13 51.6 0.0 1.1 1 0 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 gi|336255670|ref|YP_004598777.1| - 0.0012 18.8 0.2 0.029 14.3 0.2 2.2 2 0 0 2 2 2 1 FAD synthetase PTA_PTB PF01515.19 gi|336255671|ref|YP_004598778.1| - 4.1e-94 315.5 0.0 5.5e-94 315.0 0.0 1.2 1 0 0 1 1 1 1 Phosphate acetyl/butaryl transferase malic PF00390.19 gi|336255671|ref|YP_004598778.1| - 3e-30 105.4 0.1 6.8e-28 97.7 0.1 2.4 1 1 0 1 1 1 1 Malic enzyme, N-terminal domain Malic_M PF03949.15 gi|336255671|ref|YP_004598778.1| - 1e-21 77.4 0.1 2.7e-21 76.0 0.1 1.7 1 1 0 1 1 1 1 Malic enzyme, NAD binding domain HTH_31 PF13560.6 gi|336255671|ref|YP_004598778.1| - 0.046 14.1 0.0 0.12 12.7 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain PQQ_3 PF13570.6 gi|336255672|ref|YP_004598779.1| - 5.8e-36 122.1 27.3 2.1e-08 34.4 0.3 9.0 8 1 0 8 8 8 6 PQQ-like domain PQQ PF01011.21 gi|336255672|ref|YP_004598779.1| - 2e-35 119.0 18.2 1e-08 34.7 0.3 8.1 8 1 0 8 8 8 5 PQQ enzyme repeat PQQ_2 PF13360.6 gi|336255672|ref|YP_004598779.1| - 9.3e-32 110.5 4.7 1.4e-13 51.0 0.5 3.4 1 1 1 3 3 3 3 PQQ-like domain Ribosomal_S8e PF01201.22 gi|336255673|ref|YP_004598780.1| - 6.5e-32 110.6 3.2 7.5e-32 110.4 3.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S8e PhoU PF01895.19 gi|336255674|ref|YP_004598781.1| - 9.4e-20 70.9 6.9 1.9e-15 57.1 1.0 2.5 2 0 0 2 2 2 2 PhoU domain MazE_antitoxin PF04014.18 gi|336255674|ref|YP_004598781.1| - 1.2e-11 44.2 0.1 6e-11 42.0 0.0 2.3 2 0 0 2 2 2 1 Antidote-toxin recognition MazE, bacterial antitoxin NIR_SIR_ferr PF03460.17 gi|336255674|ref|YP_004598781.1| - 0.063 13.1 0.3 0.25 11.2 0.1 2.1 2 0 0 2 2 2 0 Nitrite/Sulfite reductase ferredoxin-like half domain PBP_like_2 PF12849.7 gi|336255675|ref|YP_004598782.1| - 1.1e-29 104.0 0.4 1.8e-29 103.3 0.4 1.3 1 0 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.7 gi|336255675|ref|YP_004598782.1| - 1.5e-12 47.0 0.0 2.9e-12 46.1 0.0 1.5 1 0 0 1 1 1 1 PBP superfamily domain TAT_signal PF10518.9 gi|336255675|ref|YP_004598782.1| - 0.012 15.4 0.8 0.022 14.6 0.8 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.9 gi|336255675|ref|YP_004598782.1| - 0.18 11.2 0.3 0.33 10.3 0.3 1.4 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal BPD_transp_1 PF00528.22 gi|336255676|ref|YP_004598783.1| - 5.6e-17 62.1 13.6 5.6e-17 62.1 13.6 2.2 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|336255677|ref|YP_004598784.1| - 3.5e-17 62.7 16.3 3.5e-17 62.7 16.3 4.6 1 1 2 5 5 5 2 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|336255678|ref|YP_004598785.1| - 3.1e-29 102.2 0.0 5.4e-29 101.5 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|336255678|ref|YP_004598785.1| - 5.2e-12 46.2 0.0 7.9e-05 22.6 0.0 2.4 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|336255678|ref|YP_004598785.1| - 2.6e-09 36.8 0.1 8.1e-05 22.2 0.0 2.2 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|336255678|ref|YP_004598785.1| - 2.3e-06 27.6 0.0 0.00051 19.9 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|336255678|ref|YP_004598785.1| - 7.9e-05 22.9 0.0 0.00019 21.7 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|336255678|ref|YP_004598785.1| - 0.00027 21.5 0.0 0.00055 20.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|336255678|ref|YP_004598785.1| - 0.0011 18.7 0.0 0.0024 17.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain RsgA_GTPase PF03193.16 gi|336255678|ref|YP_004598785.1| - 0.0013 18.6 0.0 0.0028 17.6 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase Rad17 PF03215.15 gi|336255678|ref|YP_004598785.1| - 0.0084 16.1 0.0 0.014 15.3 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_16 PF13191.6 gi|336255678|ref|YP_004598785.1| - 0.0087 16.5 0.0 0.036 14.4 0.0 1.8 2 0 0 2 2 2 1 AAA ATPase domain AAA_30 PF13604.6 gi|336255678|ref|YP_004598785.1| - 0.018 14.8 0.0 0.67 9.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain DeoRC PF00455.22 gi|336255678|ref|YP_004598785.1| - 0.022 14.7 0.0 0.036 14.0 0.0 1.3 1 0 0 1 1 1 0 DeoR C terminal sensor domain PRK PF00485.18 gi|336255678|ref|YP_004598785.1| - 0.025 14.3 0.0 0.045 13.5 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_25 PF13481.6 gi|336255678|ref|YP_004598785.1| - 0.028 14.0 0.0 0.18 11.4 0.0 2.0 2 0 0 2 2 2 0 AAA domain Adeno_IVa2 PF02456.15 gi|336255678|ref|YP_004598785.1| - 0.079 11.7 0.0 0.83 8.4 0.0 2.0 2 0 0 2 2 2 0 Adenovirus IVa2 protein ATPase_2 PF01637.18 gi|336255678|ref|YP_004598785.1| - 0.085 12.8 0.0 0.48 10.3 0.0 2.0 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_24 PF13479.6 gi|336255678|ref|YP_004598785.1| - 0.1 12.3 0.0 0.26 11.0 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|336255678|ref|YP_004598785.1| - 0.15 12.2 0.0 0.34 11.1 0.0 1.7 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 gi|336255678|ref|YP_004598785.1| - 0.18 11.2 0.0 0.3 10.4 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI NACHT PF05729.12 gi|336255678|ref|YP_004598785.1| - 0.2 11.5 0.0 0.37 10.7 0.0 1.4 1 0 0 1 1 1 0 NACHT domain dCache_1 PF02743.18 gi|336255679|ref|YP_004598786.1| - 3.6e-09 36.8 0.1 8.5e-09 35.6 0.0 1.6 2 0 0 2 2 2 1 Cache domain HATPase_c_2 PF13581.6 gi|336255679|ref|YP_004598786.1| - 2.3e-08 34.0 1.9 4.9e-08 33.0 0.1 2.3 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain HATPase_c PF02518.26 gi|336255679|ref|YP_004598786.1| - 2.6e-08 34.4 0.0 5.9e-08 33.2 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|336255679|ref|YP_004598786.1| - 0.066 13.3 4.8 0.47 10.5 1.1 2.8 2 0 0 2 2 2 0 His Kinase A (phospho-acceptor) domain LapA_dom PF06305.11 gi|336255679|ref|YP_004598786.1| - 1.9 8.4 4.8 2.7 7.9 0.2 2.4 2 0 0 2 2 2 0 Lipopolysaccharide assembly protein A domain HisKA_4TM PF16926.5 gi|336255679|ref|YP_004598786.1| - 9.4 5.8 11.0 0.12 11.9 2.1 2.5 4 1 0 4 4 4 0 Archaeal 4TM region of histidine kinase PhoU PF01895.19 gi|336255680|ref|YP_004598787.1| - 4.8e-39 132.7 14.6 8.2e-22 77.5 1.6 2.2 2 0 0 2 2 2 2 PhoU domain HalOD1 PF18545.1 gi|336255681|ref|YP_004598788.1| - 2.9e-09 37.0 2.1 5.5e-09 36.2 2.1 1.4 1 1 0 1 1 1 1 Halobacterial output domain 1 HTH_10 PF04967.12 gi|336255682|ref|YP_004598789.1| - 1.3e-15 57.0 0.1 2.2e-15 56.2 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|336255682|ref|YP_004598789.1| - 8.7e-07 28.9 7.9 8.7e-07 28.9 7.9 1.7 2 0 0 2 2 2 1 GAF and HTH_10 associated domain MarR_2 PF12802.7 gi|336255682|ref|YP_004598789.1| - 0.011 15.6 0.1 0.028 14.3 0.1 1.7 1 0 0 1 1 1 0 MarR family HTH_20 PF12840.7 gi|336255682|ref|YP_004598789.1| - 0.014 15.4 1.2 0.032 14.3 0.1 2.1 2 1 0 2 2 2 0 Helix-turn-helix domain MS_channel PF00924.18 gi|336255683|ref|YP_004598790.1| - 5.7e-47 159.9 0.4 1.1e-46 159.0 0.0 1.7 2 0 0 2 2 2 1 Mechanosensitive ion channel Bactofilin PF04519.13 gi|336255684|ref|YP_004598791.1| - 3e-13 49.9 6.4 4.9e-09 36.4 0.2 3.7 2 2 1 3 3 3 3 Polymer-forming cytoskeletal Hexapep PF00132.24 gi|336255684|ref|YP_004598791.1| - 3.1e-08 33.0 14.1 0.01 15.5 0.0 7.2 6 1 0 7 7 7 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|336255684|ref|YP_004598791.1| - 0.0043 16.8 12.9 0.04 13.7 0.5 4.9 4 1 0 4 4 4 2 Hexapeptide repeat of succinyl-transferase DUF3494 PF11999.8 gi|336255684|ref|YP_004598791.1| - 0.023 14.3 0.0 2.3 7.8 0.0 3.1 2 1 1 3 3 3 0 Protein of unknown function (DUF3494) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halopiger_xanaduensis_SH_6_uid68105/NC_015666.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halopiger_xanaduensis_SH_6_uid68105/NC_015666.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halopiger_xanaduensis_SH_6_uid68105/NC_015666.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halopiger_xanaduensis_SH_6_uid68105/NC_015666.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 12:56:32 2019 # [ok]