# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- CTP_transf_3 PF02348.19 gi|336251462|ref|YP_004586065.1| - 1.6e-26 93.6 0.0 2e-26 93.3 0.0 1.1 1 0 0 1 1 1 1 Cytidylyltransferase NTP_transf_3 PF12804.7 gi|336251462|ref|YP_004586065.1| - 1.8e-08 34.9 0.0 2.3e-08 34.5 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain DUF2064 PF09837.9 gi|336251462|ref|YP_004586065.1| - 7.1e-05 22.6 0.1 0.00012 21.9 0.1 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2064) CofC PF01983.16 gi|336251462|ref|YP_004586065.1| - 0.00016 20.9 0.0 0.00023 20.4 0.0 1.2 1 0 0 1 1 1 1 Guanylyl transferase CofC like IspD PF01128.19 gi|336251462|ref|YP_004586065.1| - 0.015 15.0 0.1 0.022 14.5 0.1 1.2 1 0 0 1 1 1 0 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Capsule_synth PF05159.14 gi|336251463|ref|YP_004586066.1| - 6.2e-05 22.6 0.0 9.5e-05 22.0 0.0 1.2 1 0 0 1 1 1 1 Capsule polysaccharide biosynthesis protein DUF354 PF04007.12 gi|336251463|ref|YP_004586066.1| - 0.063 12.3 0.0 0.1 11.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF354) Sulfatase PF00884.23 gi|336251464|ref|YP_004586067.1| - 1.2e-43 149.7 0.8 1.5e-43 149.4 0.8 1.1 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 gi|336251464|ref|YP_004586067.1| - 2.2e-09 37.4 0.3 4e-05 23.4 0.1 2.3 2 1 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase AAA_22 PF13401.6 gi|336251468|ref|YP_004586071.1| - 8e-13 48.8 0.0 9.4e-12 45.4 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|336251468|ref|YP_004586071.1| - 7.5e-09 36.2 1.1 1.3e-07 32.2 0.3 2.7 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|336251468|ref|YP_004586071.1| - 7.3e-05 23.2 0.0 0.00064 20.2 0.0 2.5 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Bac_DnaA PF00308.18 gi|336251468|ref|YP_004586071.1| - 0.0021 17.9 0.0 0.77 9.5 0.0 2.3 2 0 0 2 2 2 2 Bacterial dnaA protein AAA_assoc_2 PF16193.5 gi|336251468|ref|YP_004586071.1| - 0.0034 17.7 0.1 0.009 16.3 0.1 1.7 1 0 0 1 1 1 1 AAA C-terminal domain ABC_tran PF00005.27 gi|336251468|ref|YP_004586071.1| - 0.01 16.4 0.1 0.25 11.9 0.0 2.5 3 0 0 3 3 3 1 ABC transporter ATPase_2 PF01637.18 gi|336251468|ref|YP_004586071.1| - 0.011 15.7 0.0 0.15 11.9 0.0 2.6 3 0 0 3 3 3 0 ATPase domain predominantly from Archaea AAA_24 PF13479.6 gi|336251468|ref|YP_004586071.1| - 0.012 15.4 0.0 0.02 14.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|336251468|ref|YP_004586071.1| - 0.012 16.0 0.0 0.042 14.2 0.0 1.9 2 0 0 2 2 2 0 RNA helicase AAA_33 PF13671.6 gi|336251468|ref|YP_004586071.1| - 0.014 15.6 0.0 0.057 13.6 0.0 2.1 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|336251468|ref|YP_004586071.1| - 0.11 12.2 0.0 0.35 10.6 0.0 1.8 1 0 0 1 1 1 0 IstB-like ATP binding protein Myosin_head PF00063.21 gi|336251468|ref|YP_004586071.1| - 0.15 10.2 0.0 0.21 9.8 0.0 1.2 1 0 0 1 1 1 0 Myosin head (motor domain) DUF4096 PF13340.6 gi|336251469|ref|YP_004586072.1| - 0.058 13.6 0.0 0.084 13.1 0.0 1.4 1 0 0 1 1 1 0 Putative transposase of IS4/5 family (DUF4096) Sirohm_synth_C PF14823.6 gi|336251469|ref|YP_004586072.1| - 0.1 12.3 0.0 0.14 11.8 0.0 1.3 1 0 0 1 1 1 0 Sirohaem biosynthesis protein C-terminal HTH_20 PF12840.7 gi|336251471|ref|YP_004586074.1| - 6.3e-05 23.0 0.2 0.00013 21.9 0.0 1.8 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|336251471|ref|YP_004586074.1| - 0.003 17.1 0.0 0.13 11.9 0.0 2.3 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.6 gi|336251471|ref|YP_004586074.1| - 0.0066 16.9 0.0 0.014 15.8 0.0 1.6 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_5 PF01022.20 gi|336251471|ref|YP_004586074.1| - 0.0072 16.2 0.0 0.012 15.5 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|336251471|ref|YP_004586074.1| - 0.018 15.0 0.0 0.028 14.3 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_45 PF14947.6 gi|336251471|ref|YP_004586074.1| - 0.021 14.8 0.0 0.034 14.1 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix Replic_Relax PF13814.6 gi|336251471|ref|YP_004586074.1| - 0.031 14.4 0.0 0.037 14.1 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation HTH_AsnC-type PF13404.6 gi|336251471|ref|YP_004586074.1| - 0.063 13.1 0.5 0.46 10.4 0.1 2.3 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain hnRNP_Q_AcD PF18360.1 gi|336251471|ref|YP_004586074.1| - 0.098 12.6 0.0 3.3 7.8 0.0 2.2 2 0 0 2 2 2 0 Heterogeneous nuclear ribonucleoprotein Q acidic domain TilS_C PF11734.8 gi|336251471|ref|YP_004586074.1| - 0.12 11.8 0.0 0.2 11.1 0.0 1.3 1 0 0 1 1 1 0 TilS substrate C-terminal domain DUF4988 PF16378.5 gi|336251473|ref|YP_004586076.1| - 0.016 14.9 1.9 0.016 14.9 0.3 1.8 2 0 0 2 2 2 0 Domain of unknown function DUF4686 PF15742.5 gi|336251473|ref|YP_004586076.1| - 0.037 13.2 0.3 0.049 12.8 0.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4686) Syntaxin PF00804.25 gi|336251473|ref|YP_004586076.1| - 0.041 13.5 1.1 2.7 7.6 0.7 2.4 2 0 0 2 2 2 0 Syntaxin BLOC1_2 PF10046.9 gi|336251473|ref|YP_004586076.1| - 0.073 13.4 2.3 0.27 11.6 1.1 2.4 2 1 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Phage_GP20 PF06810.11 gi|336251473|ref|YP_004586076.1| - 0.12 12.1 1.5 0.24 11.2 1.1 1.7 2 0 0 2 2 2 0 Phage minor structural protein GP20 FlaC_arch PF05377.11 gi|336251473|ref|YP_004586076.1| - 0.13 12.7 1.0 2.1 8.8 0.1 2.8 3 0 0 3 3 3 0 Flagella accessory protein C (FlaC) DivIVA PF05103.13 gi|336251473|ref|YP_004586076.1| - 0.57 10.3 3.3 0.32 11.1 1.1 1.7 2 0 0 2 2 2 0 DivIVA protein XhlA PF10779.9 gi|336251473|ref|YP_004586076.1| - 0.63 10.3 2.9 3.6 7.8 2.9 2.2 1 1 0 1 1 1 0 Haemolysin XhlA HSBP1 PF06825.12 gi|336251473|ref|YP_004586076.1| - 0.72 9.7 4.4 0.16 11.9 0.8 1.8 2 0 0 2 2 2 0 Heat shock factor binding protein 1 MCM PF00493.23 gi|336251474|ref|YP_004586077.1| - 1.7e-78 262.8 0.0 2.5e-78 262.3 0.0 1.2 1 0 0 1 1 1 1 MCM P-loop domain MCM_lid PF17855.1 gi|336251474|ref|YP_004586077.1| - 1e-24 86.7 1.5 1.9e-24 85.9 1.5 1.5 1 0 0 1 1 1 1 MCM AAA-lid domain MCM_OB PF17207.3 gi|336251474|ref|YP_004586077.1| - 1.5e-19 70.0 0.1 2.9e-19 69.2 0.1 1.3 1 0 0 1 1 1 1 MCM OB domain MCM_N PF14551.6 gi|336251474|ref|YP_004586077.1| - 4.7e-10 40.0 3.8 8e-10 39.2 1.0 2.6 2 1 1 3 3 3 1 MCM N-terminal domain Mg_chelatase PF01078.21 gi|336251474|ref|YP_004586077.1| - 0.00028 20.3 0.0 0.002 17.5 0.0 2.0 1 1 0 2 2 2 1 Magnesium chelatase, subunit ChlI HTH_IclR PF09339.10 gi|336251475|ref|YP_004586078.1| - 1.3e-06 28.1 0.0 1.4e-05 24.7 0.0 2.0 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|336251475|ref|YP_004586078.1| - 3.9e-05 23.6 0.0 5.5e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|336251475|ref|YP_004586078.1| - 6.3e-05 22.8 0.0 7.2e-05 22.6 0.0 1.1 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|336251475|ref|YP_004586078.1| - 0.00057 19.7 0.0 0.00092 19.1 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_28 PF13518.6 gi|336251475|ref|YP_004586078.1| - 0.00066 19.8 0.0 0.0009 19.3 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|336251475|ref|YP_004586078.1| - 0.0027 17.5 0.0 0.0042 16.9 0.0 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain MarR PF01047.22 gi|336251475|ref|YP_004586078.1| - 0.009 15.9 0.0 0.013 15.4 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_CodY PF08222.11 gi|336251475|ref|YP_004586078.1| - 0.011 15.3 0.0 0.02 14.5 0.0 1.4 1 0 0 1 1 1 0 CodY helix-turn-helix domain HTH_24 PF13412.6 gi|336251475|ref|YP_004586078.1| - 0.012 15.2 0.0 0.017 14.7 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_30 PF13556.6 gi|336251475|ref|YP_004586078.1| - 0.023 14.5 0.0 0.029 14.2 0.0 1.3 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|336251475|ref|YP_004586078.1| - 0.025 14.4 0.0 0.034 13.9 0.0 1.2 1 0 0 1 1 1 0 LexA DNA binding domain HTH_29 PF13551.6 gi|336251475|ref|YP_004586078.1| - 0.03 14.3 0.0 0.055 13.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix Crp PF00325.20 gi|336251475|ref|YP_004586078.1| - 0.034 13.8 0.5 0.088 12.5 0.5 1.8 1 0 0 1 1 1 0 Bacterial regulatory proteins, crp family HTH_23 PF13384.6 gi|336251475|ref|YP_004586078.1| - 0.036 13.9 0.1 0.052 13.4 0.1 1.2 1 0 0 1 1 1 0 Homeodomain-like domain Fe_dep_repress PF01325.19 gi|336251475|ref|YP_004586078.1| - 0.095 12.9 0.0 0.14 12.4 0.0 1.2 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain PadR PF03551.14 gi|336251475|ref|YP_004586078.1| - 0.15 12.1 0.0 0.29 11.1 0.0 1.5 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_11 PF08279.12 gi|336251475|ref|YP_004586078.1| - 0.17 11.9 0.0 0.25 11.3 0.0 1.3 1 0 0 1 1 1 0 HTH domain DUF2387 PF09526.10 gi|336251476|ref|YP_004586079.1| - 0.0052 16.9 0.2 0.0089 16.2 0.2 1.4 1 0 0 1 1 1 1 Probable metal-binding protein (DUF2387) Nudix_N_2 PF14803.6 gi|336251476|ref|YP_004586079.1| - 0.011 15.6 1.7 0.029 14.3 1.2 2.0 1 1 1 2 2 2 0 Nudix N-terminal DZR PF12773.7 gi|336251476|ref|YP_004586079.1| - 0.032 14.3 0.5 0.062 13.3 0.5 1.4 1 0 0 1 1 1 0 Double zinc ribbon Cys_rich_CPXG PF14255.6 gi|336251476|ref|YP_004586079.1| - 0.07 13.0 0.2 0.12 12.3 0.2 1.4 1 0 0 1 1 1 0 Cysteine-rich CPXCG Lar_restr_allev PF14354.6 gi|336251476|ref|YP_004586079.1| - 0.072 13.5 0.2 0.39 11.1 0.2 2.0 2 0 0 2 2 2 0 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.10 gi|336251476|ref|YP_004586079.1| - 0.25 11.5 1.4 1.8 8.8 0.2 2.4 2 0 0 2 2 2 0 Zinc ribbon domain RNA_POL_M_15KD PF02150.16 gi|336251476|ref|YP_004586079.1| - 0.42 10.5 2.4 4.2 7.3 0.1 2.3 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit TF_Zn_Ribbon PF08271.12 gi|336251477|ref|YP_004586080.1| - 0.0062 16.0 1.8 0.0062 16.0 1.8 4.3 3 1 1 4 4 4 1 TFIIB zinc-binding HypA PF01155.19 gi|336251477|ref|YP_004586080.1| - 0.0088 16.1 8.9 2.4 8.2 0.3 3.5 3 0 0 3 3 3 2 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|336251477|ref|YP_004586080.1| - 0.01 15.9 13.5 0.29 11.3 0.4 4.5 4 0 0 4 4 4 0 Zinc ribbon domain DZR PF12773.7 gi|336251477|ref|YP_004586080.1| - 0.039 14.0 15.0 5.4 7.1 0.2 3.8 3 1 1 4 4 4 0 Double zinc ribbon Ribosomal_L37ae PF01780.19 gi|336251477|ref|YP_004586080.1| - 0.14 12.3 2.4 0.16 12.1 0.1 2.3 2 0 0 2 2 1 0 Ribosomal L37ae protein family zf-RRN7 PF11781.8 gi|336251477|ref|YP_004586080.1| - 0.25 11.0 11.9 0.33 10.7 2.3 3.3 3 0 0 3 3 3 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zf-ribbon_3 PF13248.6 gi|336251477|ref|YP_004586080.1| - 0.32 10.5 5.7 45 3.6 0.4 4.1 3 0 0 3 3 3 0 zinc-ribbon domain DUF2072 PF09845.9 gi|336251477|ref|YP_004586080.1| - 0.44 10.8 9.7 4.2 7.6 0.1 3.5 3 1 0 3 3 3 0 Zn-ribbon containing protein Cys_rich_CPCC PF14206.6 gi|336251477|ref|YP_004586080.1| - 0.91 9.4 8.8 0.096 12.5 2.6 2.3 2 0 0 2 2 2 0 Cysteine-rich CPCC OrfB_Zn_ribbon PF07282.11 gi|336251477|ref|YP_004586080.1| - 1.1 9.3 12.7 9.8 6.2 0.5 4.3 2 1 2 4 4 4 0 Putative transposase DNA-binding domain zinc-ribbons_6 PF07191.12 gi|336251477|ref|YP_004586080.1| - 3.1 7.8 11.9 13 5.9 6.6 3.2 2 1 0 2 2 2 0 zinc-ribbons DUF4379 PF14311.6 gi|336251477|ref|YP_004586080.1| - 6.7 7.2 7.8 1.4 9.3 0.4 3.0 2 1 0 2 2 2 0 Probable Zinc-ribbon domain DNA_methylase PF00145.17 gi|336251478|ref|YP_004586081.1| - 4e-36 125.0 0.0 6.2e-23 81.7 0.0 2.8 2 1 0 2 2 2 2 C-5 cytosine-specific DNA methylase TrmB PF01978.19 gi|336251479|ref|YP_004586082.1| - 7.8e-06 25.7 0.0 1e-05 25.3 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|336251479|ref|YP_004586082.1| - 1.5e-05 24.7 0.0 2.1e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.12 gi|336251479|ref|YP_004586082.1| - 0.0001 22.2 0.0 0.00014 21.7 0.0 1.2 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.7 gi|336251479|ref|YP_004586082.1| - 0.00068 19.7 0.1 0.00097 19.2 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|336251479|ref|YP_004586082.1| - 0.0012 18.7 0.1 0.0016 18.3 0.1 1.2 1 0 0 1 1 1 1 MarR family HTH_29 PF13551.6 gi|336251479|ref|YP_004586082.1| - 0.019 15.0 0.0 0.03 14.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix HTH_Crp_2 PF13545.6 gi|336251479|ref|YP_004586082.1| - 0.044 13.8 0.0 0.057 13.4 0.0 1.2 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_24 PF13412.6 gi|336251479|ref|YP_004586082.1| - 0.062 12.9 0.0 0.084 12.5 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Rrf2 PF02082.20 gi|336251479|ref|YP_004586082.1| - 0.12 12.7 0.0 0.17 12.2 0.0 1.1 1 0 0 1 1 1 0 Transcriptional regulator FUR PF01475.19 gi|336251480|ref|YP_004586083.1| - 0.0087 16.2 0.0 0.0093 16.1 0.0 1.1 1 0 0 1 1 1 1 Ferric uptake regulator family Terminase_GpA PF05876.12 gi|336251480|ref|YP_004586083.1| - 0.1 11.1 1.2 0.11 11.0 1.2 1.0 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) GST_C_2 PF13410.6 gi|336251483|ref|YP_004586086.1| - 0.054 13.5 0.4 5.6 7.1 0.0 2.3 2 0 0 2 2 2 0 Glutathione S-transferase, C-terminal domain DUF87 PF01935.17 gi|336251484|ref|YP_004586087.1| - 1.3e-10 41.7 3.2 2e-10 41.2 0.0 2.6 3 0 0 3 3 3 1 Helicase HerA, central domain ABC_tran_CTD PF16326.5 gi|336251484|ref|YP_004586087.1| - 4e-06 27.0 25.0 0.00033 20.9 2.3 4.4 4 0 0 4 4 4 2 ABC transporter C-terminal domain FPP PF05911.11 gi|336251484|ref|YP_004586087.1| - 1.5e-05 23.5 1.9 1.9e-05 23.1 1.9 1.1 1 0 0 1 1 1 1 Filament-like plant protein, long coiled-coil Phage_GP20 PF06810.11 gi|336251484|ref|YP_004586087.1| - 0.00057 19.7 12.7 0.099 12.4 0.6 4.2 3 1 1 4 4 4 1 Phage minor structural protein GP20 AAA_16 PF13191.6 gi|336251484|ref|YP_004586087.1| - 0.00068 20.1 0.0 0.00068 20.1 0.0 2.8 2 1 0 2 2 1 1 AAA ATPase domain TMF_DNA_bd PF12329.8 gi|336251484|ref|YP_004586087.1| - 0.00074 19.5 12.4 0.073 13.1 3.6 2.7 2 0 0 2 2 2 2 TATA element modulatory factor 1 DNA binding DUF812 PF05667.11 gi|336251484|ref|YP_004586087.1| - 0.001 18.1 5.4 0.0018 17.3 5.4 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF812) LexA_DNA_bind PF01726.16 gi|336251484|ref|YP_004586087.1| - 0.0016 18.2 0.0 0.0039 16.9 0.0 1.6 1 0 0 1 1 1 1 LexA DNA binding domain TrwB_AAD_bind PF10412.9 gi|336251484|ref|YP_004586087.1| - 0.0017 17.3 0.0 0.0036 16.3 0.0 1.4 1 0 0 1 1 1 1 Type IV secretion-system coupling protein DNA-binding domain CbiA PF01656.23 gi|336251484|ref|YP_004586087.1| - 0.0018 18.3 0.0 0.0037 17.3 0.0 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain APS_kinase PF01583.20 gi|336251484|ref|YP_004586087.1| - 0.002 18.0 0.2 0.0064 16.4 0.0 1.9 2 0 0 2 2 1 1 Adenylylsulphate kinase Fib_alpha PF08702.10 gi|336251484|ref|YP_004586087.1| - 0.0021 18.2 2.2 0.0054 16.9 2.1 1.7 1 1 0 1 1 1 1 Fibrinogen alpha/beta chain family MAD PF05557.13 gi|336251484|ref|YP_004586087.1| - 0.0026 16.2 13.9 0.0043 15.5 13.9 1.2 1 0 0 1 1 1 1 Mitotic checkpoint protein CCDC144C PF14915.6 gi|336251484|ref|YP_004586087.1| - 0.005 16.0 2.0 0.005 16.0 2.0 2.3 2 0 0 2 2 2 1 CCDC144C protein coiled-coil region CENP-F_leu_zip PF10473.9 gi|336251484|ref|YP_004586087.1| - 0.0082 16.2 22.9 0.3 11.1 7.7 3.0 2 1 0 2 2 2 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 YscO-like PF16789.5 gi|336251484|ref|YP_004586087.1| - 0.0097 16.0 1.4 0.0097 16.0 1.4 2.8 2 1 1 3 3 2 1 YscO-like protein FapA PF03961.13 gi|336251484|ref|YP_004586087.1| - 0.01 14.5 3.1 0.017 13.8 3.1 1.4 1 0 0 1 1 1 0 Flagellar Assembly Protein A Exonuc_VII_L PF02601.15 gi|336251484|ref|YP_004586087.1| - 0.012 15.2 3.1 0.019 14.6 3.1 1.4 1 0 0 1 1 1 0 Exonuclease VII, large subunit FTA4 PF13093.6 gi|336251484|ref|YP_004586087.1| - 0.015 15.2 5.8 0.018 15.0 4.8 1.7 1 1 0 1 1 1 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 DUF853 PF05872.12 gi|336251484|ref|YP_004586087.1| - 0.018 13.7 6.4 0.089 11.4 0.1 3.0 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF853) Macoilin PF09726.9 gi|336251484|ref|YP_004586087.1| - 0.033 12.8 11.5 0.046 12.3 11.5 1.1 1 0 0 1 1 1 0 Macoilin family Csm1_N PF18504.1 gi|336251484|ref|YP_004586087.1| - 0.034 14.5 13.7 0.13 12.6 1.0 3.4 3 0 0 3 3 2 0 Csm1 N-terminal domain AAA_10 PF12846.7 gi|336251484|ref|YP_004586087.1| - 0.039 12.9 0.3 0.24 10.3 0.0 2.4 3 0 0 3 3 3 0 AAA-like domain DUF4795 PF16043.5 gi|336251484|ref|YP_004586087.1| - 0.04 13.5 8.9 0.67 9.5 0.6 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4795) AAA_22 PF13401.6 gi|336251484|ref|YP_004586087.1| - 0.056 13.7 3.7 0.4 11.0 0.0 3.0 3 1 0 3 3 2 0 AAA domain Uds1 PF15456.6 gi|336251484|ref|YP_004586087.1| - 0.056 13.6 9.1 0.2 11.8 8.6 2.1 2 0 0 2 2 1 0 Up-regulated During Septation DUF16 PF01519.16 gi|336251484|ref|YP_004586087.1| - 0.071 13.6 3.8 1.7 9.1 1.0 2.6 2 0 0 2 2 2 0 Protein of unknown function DUF16 DUF4094 PF13334.6 gi|336251484|ref|YP_004586087.1| - 0.086 13.3 1.8 14 6.2 0.3 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4094) NPV_P10 PF05531.12 gi|336251484|ref|YP_004586087.1| - 0.1 13.1 3.1 12 6.5 0.7 2.8 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein AAA PF00004.29 gi|336251484|ref|YP_004586087.1| - 0.11 12.9 0.5 1.2 9.5 0.0 2.7 2 1 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) FlaC_arch PF05377.11 gi|336251484|ref|YP_004586087.1| - 0.11 12.9 9.2 1.1 9.7 1.9 2.9 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) DASH_Spc19 PF08287.11 gi|336251484|ref|YP_004586087.1| - 0.12 12.3 14.7 0.028 14.3 9.2 2.3 1 1 1 2 2 2 0 Spc19 DUF1151 PF06625.11 gi|336251484|ref|YP_004586087.1| - 0.13 12.2 17.2 0.037 14.0 5.3 2.7 3 0 0 3 3 2 0 Protein of unknown function (DUF1151) AAA_33 PF13671.6 gi|336251484|ref|YP_004586087.1| - 0.14 12.4 0.6 0.56 10.4 0.0 2.3 2 1 0 2 2 1 0 AAA domain DUF4201 PF13870.6 gi|336251484|ref|YP_004586087.1| - 0.14 11.8 9.5 2.1 8.1 1.9 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF4201) Cep57_CLD PF14073.6 gi|336251484|ref|YP_004586087.1| - 0.14 12.1 15.3 0.19 11.7 13.9 1.9 1 1 1 2 2 2 0 Centrosome localisation domain of Cep57 Mei5 PF10376.9 gi|336251484|ref|YP_004586087.1| - 0.15 11.9 6.6 0.26 11.1 6.6 1.3 1 0 0 1 1 1 0 Double-strand recombination repair protein DUF2408 PF10303.9 gi|336251484|ref|YP_004586087.1| - 0.17 12.4 4.3 0.43 11.1 4.3 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2408) HOOK PF05622.12 gi|336251484|ref|YP_004586087.1| - 0.2 9.8 15.8 0.049 11.8 12.2 1.8 2 0 0 2 2 2 0 HOOK protein P4Ha_N PF08336.11 gi|336251484|ref|YP_004586087.1| - 0.26 11.3 5.5 3.5 7.6 0.1 2.7 2 0 0 2 2 2 0 Prolyl 4-Hydroxylase alpha-subunit, N-terminal region Rootletin PF15035.6 gi|336251484|ref|YP_004586087.1| - 0.27 11.2 11.3 0.53 10.3 11.3 1.5 1 0 0 1 1 1 0 Ciliary rootlet component, centrosome cohesion ATG16 PF08614.11 gi|336251484|ref|YP_004586087.1| - 0.3 11.3 19.6 0.31 11.2 3.8 2.5 2 0 0 2 2 2 0 Autophagy protein 16 (ATG16) DUF2802 PF10975.8 gi|336251484|ref|YP_004586087.1| - 0.31 11.2 6.8 4.7 7.4 2.7 3.5 3 1 0 3 3 3 0 Protein of unknown function (DUF2802) DivIC PF04977.15 gi|336251484|ref|YP_004586087.1| - 0.32 10.8 18.1 0.36 10.6 0.8 3.6 3 0 0 3 3 3 0 Septum formation initiator ATPase PF06745.13 gi|336251484|ref|YP_004586087.1| - 0.32 10.3 1.4 0.57 9.5 0.0 2.1 3 0 0 3 3 1 0 KaiC TMPIT PF07851.13 gi|336251484|ref|YP_004586087.1| - 0.37 10.0 2.5 8.7 5.5 0.8 2.1 2 0 0 2 2 2 0 TMPIT-like protein DUF241 PF03087.14 gi|336251484|ref|YP_004586087.1| - 0.43 10.4 5.1 0.59 9.9 0.9 2.2 2 0 0 2 2 2 0 Arabidopsis protein of unknown function AAA_13 PF13166.6 gi|336251484|ref|YP_004586087.1| - 0.46 9.1 10.6 1.2 7.7 3.3 2.1 1 1 0 2 2 2 0 AAA domain Prefoldin_2 PF01920.20 gi|336251484|ref|YP_004586087.1| - 0.46 10.5 14.4 1.8 8.6 0.6 3.0 3 0 0 3 3 2 0 Prefoldin subunit DUF2730 PF10805.8 gi|336251484|ref|YP_004586087.1| - 0.51 10.5 4.2 4.9 7.3 0.5 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2730) DUF4349 PF14257.6 gi|336251484|ref|YP_004586087.1| - 0.53 9.7 15.7 0.54 9.7 1.0 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4349) Med4 PF10018.9 gi|336251484|ref|YP_004586087.1| - 0.61 9.7 13.4 4.9 6.8 6.2 2.6 1 1 1 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 Spc42p PF11544.8 gi|336251484|ref|YP_004586087.1| - 0.63 10.1 4.4 1.4 8.9 0.2 2.5 2 0 0 2 2 2 0 Spindle pole body component Spc42p HR1 PF02185.16 gi|336251484|ref|YP_004586087.1| - 0.73 10.0 14.4 0.45 10.6 5.2 2.8 2 0 0 2 2 2 0 Hr1 repeat XhlA PF10779.9 gi|336251484|ref|YP_004586087.1| - 0.99 9.7 15.2 0.32 11.2 3.7 3.5 3 0 0 3 3 3 0 Haemolysin XhlA AAA_29 PF13555.6 gi|336251484|ref|YP_004586087.1| - 1.1 9.0 3.6 0.27 11.0 0.2 1.7 2 0 0 2 2 1 0 P-loop containing region of AAA domain CENP-H PF05837.12 gi|336251484|ref|YP_004586087.1| - 1.3 9.5 9.3 1.2 9.6 1.8 2.6 2 0 0 2 2 2 0 Centromere protein H (CENP-H) Spc7 PF08317.11 gi|336251484|ref|YP_004586087.1| - 1.6 7.5 18.4 1.2 8.0 7.7 2.0 1 1 0 1 1 1 0 Spc7 kinetochore protein Phage_tail_NK PF16532.5 gi|336251484|ref|YP_004586087.1| - 1.6 8.3 3.0 23 4.5 0.1 2.2 2 0 0 2 2 2 0 Sf6-type phage tail needle knob or tip of some Caudovirales Seryl_tRNA_N PF02403.22 gi|336251484|ref|YP_004586087.1| - 1.7 8.9 13.7 0.56 10.5 9.4 2.4 2 0 0 2 2 1 0 Seryl-tRNA synthetase N-terminal domain DUF4407 PF14362.6 gi|336251484|ref|YP_004586087.1| - 2 7.7 16.5 8.9 5.6 16.5 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) Ead_Ea22 PF13935.6 gi|336251484|ref|YP_004586087.1| - 2.4 8.8 13.7 0.42 11.3 6.8 2.6 1 1 1 2 2 2 0 Ead/Ea22-like protein Phage_HK97_TLTM PF06120.11 gi|336251484|ref|YP_004586087.1| - 2.5 7.2 8.2 3.1 6.9 0.5 2.3 2 0 0 2 2 2 0 Tail length tape measure protein OmpH PF03938.14 gi|336251484|ref|YP_004586087.1| - 2.6 8.4 18.3 13 6.2 6.1 3.2 3 1 0 3 3 3 0 Outer membrane protein (OmpH-like) Troponin PF00992.20 gi|336251484|ref|YP_004586087.1| - 2.8 8.3 17.9 0.66 10.3 0.9 2.9 3 0 0 3 3 2 0 Troponin Com_YlbF PF06133.11 gi|336251484|ref|YP_004586087.1| - 3.2 8.4 12.7 2.2 8.9 0.3 2.8 2 0 0 2 2 2 0 Control of competence regulator ComK, YlbF/YmcA Spc24 PF08286.11 gi|336251484|ref|YP_004586087.1| - 3.3 8.0 10.7 5.3 7.3 1.1 2.8 3 0 0 3 3 2 0 Spc24 subunit of Ndc80 DivIVA PF05103.13 gi|336251484|ref|YP_004586087.1| - 3.9 7.6 13.9 1.5 8.9 3.2 2.6 2 1 0 2 2 2 0 DivIVA protein Fez1 PF06818.15 gi|336251484|ref|YP_004586087.1| - 4.5 7.7 15.3 12 6.2 15.3 1.7 1 1 0 1 1 1 0 Fez1 Tropomyosin_1 PF12718.7 gi|336251484|ref|YP_004586087.1| - 4.6 7.4 24.1 4.9 7.3 6.9 3.4 2 1 0 2 2 2 0 Tropomyosin like UPF0242 PF06785.11 gi|336251484|ref|YP_004586087.1| - 4.7 7.3 20.1 0.94 9.6 2.7 2.2 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus BRE1 PF08647.11 gi|336251484|ref|YP_004586087.1| - 5.3 7.2 10.9 6.8 6.8 0.3 2.6 2 0 0 2 2 2 0 BRE1 E3 ubiquitin ligase PilO PF04350.13 gi|336251484|ref|YP_004586087.1| - 5.4 7.2 7.5 28 4.9 3.1 3.0 2 1 1 3 3 3 0 Pilus assembly protein, PilO BST2 PF16716.5 gi|336251484|ref|YP_004586087.1| - 5.8 7.6 13.3 1.8 9.2 4.7 2.9 2 1 1 3 3 2 0 Bone marrow stromal antigen 2 NuA4 PF09340.10 gi|336251484|ref|YP_004586087.1| - 5.8 6.9 5.5 10 6.1 1.0 2.6 2 0 0 2 2 2 0 Histone acetyltransferase subunit NuA4 Taxilin PF09728.9 gi|336251484|ref|YP_004586087.1| - 6.3 5.9 14.3 0.28 10.3 0.7 2.4 1 1 1 3 3 3 0 Myosin-like coiled-coil protein Cob_adeno_trans PF01923.18 gi|336251484|ref|YP_004586087.1| - 7.5 6.7 7.9 4.8 7.3 1.7 2.5 1 1 1 2 2 2 0 Cobalamin adenosyltransferase Swi5 PF07061.11 gi|336251484|ref|YP_004586087.1| - 7.7 6.7 8.2 13 5.9 1.2 3.1 3 0 0 3 3 2 0 Swi5 BLOC1_2 PF10046.9 gi|336251484|ref|YP_004586087.1| - 8.6 6.7 9.5 6.6 7.1 0.3 2.8 3 0 0 3 3 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF3510 PF12022.8 gi|336251485|ref|YP_004586088.1| - 0.014 15.8 0.0 0.049 14.0 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF3510) PadR PF03551.14 gi|336251486|ref|YP_004586089.1| - 2.1e-13 50.0 0.1 2.6e-13 49.7 0.1 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.6 gi|336251486|ref|YP_004586089.1| - 0.00056 19.8 0.0 0.00076 19.4 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DUF1495 PF07381.11 gi|336251486|ref|YP_004586089.1| - 0.05 13.4 0.0 0.07 13.0 0.0 1.3 1 1 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) DUF4364 PF14277.6 gi|336251486|ref|YP_004586089.1| - 0.19 11.5 0.0 0.24 11.1 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) YajC PF02699.15 gi|336251488|ref|YP_004586091.1| - 0.027 14.4 0.0 0.042 13.7 0.0 1.3 1 0 0 1 1 1 0 Preprotein translocase subunit HHH_5 PF14520.6 gi|336251489|ref|YP_004586092.1| - 0.0077 16.8 0.0 0.11 13.1 0.0 2.3 2 1 0 2 2 2 1 Helix-hairpin-helix domain Lar_restr_allev PF14354.6 gi|336251494|ref|YP_004586097.1| - 0.0091 16.4 1.5 0.0091 16.4 1.5 1.5 2 0 0 2 2 2 1 Restriction alleviation protein Lar IBR PF01485.21 gi|336251494|ref|YP_004586097.1| - 0.0092 16.2 0.2 0.013 15.7 0.2 1.2 1 0 0 1 1 1 1 IBR domain, a half RING-finger domain Cys_rich_CPXG PF14255.6 gi|336251494|ref|YP_004586097.1| - 0.012 15.5 0.1 0.58 10.1 0.0 2.4 2 0 0 2 2 2 0 Cysteine-rich CPXCG zf-TFIIB PF13453.6 gi|336251494|ref|YP_004586097.1| - 0.015 14.6 3.6 0.028 13.7 3.6 1.5 1 0 0 1 1 1 0 Transcription factor zinc-finger zinc_ribbon_2 PF13240.6 gi|336251494|ref|YP_004586097.1| - 0.033 13.9 2.4 0.13 12.0 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Ogr_Delta PF04606.12 gi|336251494|ref|YP_004586097.1| - 0.31 11.0 2.0 10 6.2 0.2 2.6 2 1 1 3 3 3 0 Ogr/Delta-like zinc finger zf-C4_Topoisom PF01396.19 gi|336251494|ref|YP_004586097.1| - 0.48 10.3 5.0 0.91 9.4 0.3 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Zn-ribbon_8 PF09723.10 gi|336251494|ref|YP_004586097.1| - 1.7 8.8 6.6 51 4.1 6.6 2.3 1 1 0 1 1 1 0 Zinc ribbon domain Ammonium_transp PF00909.21 gi|336251496|ref|YP_004586099.1| - 0.022 13.5 0.2 0.027 13.2 0.2 1.1 1 0 0 1 1 1 0 Ammonium Transporter Family AAA_31 PF13614.6 gi|336251498|ref|YP_004586101.1| - 4.8e-21 75.4 0.0 6e-21 75.2 0.0 1.1 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|336251498|ref|YP_004586101.1| - 3.6e-11 43.2 0.0 4.4e-11 42.9 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.11 gi|336251498|ref|YP_004586101.1| - 1.1e-06 28.2 0.6 0.018 14.3 0.1 2.2 2 0 0 2 2 2 2 ATPase MipZ CBP_BcsQ PF06564.12 gi|336251498|ref|YP_004586101.1| - 0.00012 21.7 0.1 0.0007 19.1 0.1 1.9 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ ArsA_ATPase PF02374.15 gi|336251498|ref|YP_004586101.1| - 0.00057 19.2 0.8 0.0018 17.5 0.7 1.9 1 1 0 1 1 1 1 Anion-transporting ATPase ParA PF10609.9 gi|336251498|ref|YP_004586101.1| - 0.003 17.0 0.0 0.0059 16.1 0.0 1.4 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase SRP54 PF00448.22 gi|336251498|ref|YP_004586101.1| - 0.12 12.0 0.1 0.43 10.2 0.1 1.9 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain 5TM-5TMR_LYT PF07694.12 gi|336251503|ref|YP_004586106.1| - 0.015 14.8 2.0 0.017 14.6 2.0 1.1 1 0 0 1 1 1 0 5TMR of 5TMR-LYT RHH_1 PF01402.21 gi|336251505|ref|YP_004586108.1| - 6e-10 38.7 0.2 8e-10 38.3 0.2 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_8 PF17723.1 gi|336251505|ref|YP_004586108.1| - 0.00012 22.3 0.0 0.00013 22.1 0.0 1.1 1 0 0 1 1 1 1 Ribbon-Helix-Helix transcriptional regulator family ParD_antitoxin PF03693.14 gi|336251505|ref|YP_004586108.1| - 0.016 15.6 0.1 0.02 15.3 0.1 1.2 1 0 0 1 1 1 0 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH VapB_antitoxin PF09957.9 gi|336251505|ref|YP_004586108.1| - 0.067 13.1 0.0 0.097 12.6 0.0 1.3 1 0 0 1 1 1 0 Bacterial antitoxin of type II TA system, VapB Lentiviral_Tat PF02998.14 gi|336251505|ref|YP_004586108.1| - 0.14 12.2 0.0 0.16 12.1 0.0 1.1 1 0 0 1 1 1 0 Lentiviral Tat protein DZR PF12773.7 gi|336251508|ref|YP_004586111.1| - 0.0043 17.0 0.5 0.0058 16.6 0.5 1.2 1 0 0 1 1 1 1 Double zinc ribbon VATC PF18716.1 gi|336251508|ref|YP_004586111.1| - 0.047 13.6 2.1 0.083 12.8 1.8 1.6 1 1 1 2 2 2 0 Vms1-associating treble clef domain NTP_transf_2 PF01909.23 gi|336251511|ref|YP_004586114.1| - 0.00014 22.1 0.0 0.00019 21.6 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyltransferase domain Polbeta PF18765.1 gi|336251511|ref|YP_004586114.1| - 0.00016 21.7 0.0 0.00025 21.1 0.0 1.3 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase RNase_H_2 PF13482.6 gi|336251514|ref|YP_004586117.1| - 3.3e-09 37.0 0.0 4.7e-09 36.4 0.0 1.4 1 1 0 1 1 1 1 RNase_H superfamily DNA_pol_B_exo1 PF03104.19 gi|336251514|ref|YP_004586117.1| - 1.3e-05 24.5 0.0 5.3e-05 22.5 0.0 1.8 1 1 0 1 1 1 1 DNA polymerase family B, exonuclease domain DNA_pol_B_exo2 PF10108.9 gi|336251514|ref|YP_004586117.1| - 0.0033 17.2 0.0 0.0041 16.8 0.0 1.2 1 0 0 1 1 1 1 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB DUF2093 PF09866.9 gi|336251515|ref|YP_004586118.1| - 0.019 14.4 0.0 0.029 13.8 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2093) SMC_Nse1 PF07574.13 gi|336251516|ref|YP_004586119.1| - 0.013 15.4 0.0 0.017 15.0 0.0 1.2 1 0 0 1 1 1 0 Nse1 non-SMC component of SMC5-6 complex ANAPC2 PF08672.11 gi|336251516|ref|YP_004586119.1| - 0.042 14.4 0.1 0.066 13.7 0.1 1.3 1 0 0 1 1 1 0 Anaphase promoting complex (APC) subunit 2 HARE-HTH PF05066.13 gi|336251520|ref|YP_004586123.1| - 0.0086 16.4 0.1 0.24 11.8 0.0 2.9 3 1 0 3 3 3 1 HB1, ASXL, restriction endonuclease HTH domain Ctr PF04145.15 gi|336251520|ref|YP_004586123.1| - 0.018 15.7 0.0 0.034 14.8 0.0 1.3 1 1 0 1 1 1 0 Ctr copper transporter family DUF1643 PF07799.12 gi|336251522|ref|YP_004586125.1| - 5.4e-47 159.4 0.0 6.4e-47 159.1 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1643) DUF4326 PF14216.6 gi|336251523|ref|YP_004586126.1| - 1.6e-16 60.8 0.4 6.1e-16 58.9 0.4 1.8 1 1 0 1 1 1 1 Domain of unknown function (DUF4326) PDDEXK_1 PF12705.7 gi|336251526|ref|YP_004586129.1| - 1.7e-07 31.5 0.1 8.9e-05 22.5 0.0 2.1 1 1 1 2 2 2 2 PD-(D/E)XK nuclease superfamily Host_attach PF10116.9 gi|336251528|ref|YP_004586131.1| - 0.0018 18.8 0.0 0.0024 18.5 0.0 1.1 1 0 0 1 1 1 1 Protein required for attachment to host cells baeRF_family10 PF18854.1 gi|336251528|ref|YP_004586131.1| - 0.005 17.1 0.0 0.0069 16.6 0.0 1.2 1 0 0 1 1 1 1 Bacterial archaeo-eukaryotic release factor family 10 baeRF_family12 PF18856.1 gi|336251528|ref|YP_004586131.1| - 0.087 13.4 0.0 0.11 13.1 0.0 1.2 1 0 0 1 1 1 0 Bacterial archaeo-eukaryotic release factor family 12 baeRF_family5 PF18846.1 gi|336251528|ref|YP_004586131.1| - 0.099 12.8 0.0 0.14 12.3 0.0 1.2 1 0 0 1 1 1 0 Bacterial archaeo-eukaryotic release factor family 5 Met_10 PF02475.16 gi|336251532|ref|YP_004586135.1| - 0.029 14.1 0.0 0.046 13.5 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein Ubie_methyltran PF01209.18 gi|336251532|ref|YP_004586135.1| - 0.033 13.5 0.0 0.39 10.0 0.0 2.0 2 0 0 2 2 2 0 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.6 gi|336251532|ref|YP_004586135.1| - 0.043 14.5 0.0 8.7 7.1 0.0 2.5 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_11 PF08241.12 gi|336251532|ref|YP_004586135.1| - 0.052 14.2 0.0 1.5 9.5 0.0 2.3 2 0 0 2 2 2 0 Methyltransferase domain N6_N4_Mtase PF01555.18 gi|336251532|ref|YP_004586135.1| - 0.17 11.5 0.0 1.2 8.7 0.0 1.9 1 1 0 2 2 2 0 DNA methylase DUF202 PF02656.15 gi|336251533|ref|YP_004586136.1| - 0.058 13.9 3.0 0.071 13.6 3.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF202) Phage_integrase PF00589.22 gi|336251535|ref|YP_004586138.1| - 4.2e-09 36.4 0.0 6.8e-09 35.7 0.0 1.4 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.17 gi|336251535|ref|YP_004586138.1| - 0.058 13.7 1.3 2.7 8.4 0.4 3.0 2 0 0 2 2 2 0 Phage integrase, N-terminal SAM-like domain CoA_binding_3 PF13727.6 gi|336251535|ref|YP_004586138.1| - 0.19 11.8 0.0 20 5.1 0.0 2.3 2 0 0 2 2 2 0 CoA-binding domain SseC PF04888.12 gi|336251537|ref|YP_004586140.1| - 0.18 11.4 6.5 0.071 12.7 4.2 1.5 2 0 0 2 2 2 0 Secretion system effector C (SseC) like family Prenyltrans PF00432.21 gi|336251537|ref|YP_004586140.1| - 0.62 9.9 3.6 0.49 10.2 1.1 2.0 2 0 0 2 2 2 0 Prenyltransferase and squalene oxidase repeat OppC_N PF12911.7 gi|336251537|ref|YP_004586140.1| - 0.73 9.9 6.8 2.4 8.2 6.8 1.9 1 1 0 1 1 1 0 N-terminal TM domain of oligopeptide transport permease C HHH_5 PF14520.6 gi|336251538|ref|YP_004586141.1| - 1.3e-10 41.7 0.1 2.9e-10 40.6 0.0 1.6 2 0 0 2 2 2 1 Helix-hairpin-helix domain HHH_2 PF12826.7 gi|336251538|ref|YP_004586141.1| - 1.3e-08 34.8 0.0 2.1e-08 34.1 0.0 1.3 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH PF00633.23 gi|336251538|ref|YP_004586141.1| - 0.0001 21.9 0.1 0.0034 17.2 0.0 2.5 2 0 0 2 2 2 1 Helix-hairpin-helix motif GvpG PF05120.12 gi|336251538|ref|YP_004586141.1| - 0.00019 21.3 1.1 0.00053 19.9 0.3 1.9 1 1 1 2 2 2 1 Gas vesicle protein G SHOCT PF09851.9 gi|336251538|ref|YP_004586141.1| - 0.004 16.8 1.1 0.004 16.8 1.1 1.9 2 0 0 2 2 2 1 Short C-terminal domain 5_3_exonuc PF01367.20 gi|336251538|ref|YP_004586141.1| - 0.034 14.7 0.0 1.6 9.4 0.0 2.3 1 1 1 2 2 2 0 5'-3' exonuclease, C-terminal SAM fold DUF1707 PF08044.11 gi|336251538|ref|YP_004586141.1| - 0.053 13.6 0.4 0.053 13.6 0.4 2.6 2 1 1 3 3 3 0 Domain of unknown function (DUF1707) HHH_3 PF12836.7 gi|336251538|ref|YP_004586141.1| - 0.077 13.3 0.0 0.37 11.1 0.0 2.1 1 1 0 1 1 1 0 Helix-hairpin-helix motif MCM_OB PF17207.3 gi|336251540|ref|YP_004586143.1| - 1.3e-16 60.6 0.0 2.3e-16 59.8 0.0 1.4 1 0 0 1 1 1 1 MCM OB domain MCM_N PF14551.6 gi|336251540|ref|YP_004586143.1| - 0.00073 20.1 0.0 0.0017 18.9 0.0 1.5 1 0 0 1 1 1 1 MCM N-terminal domain SP24 PF16504.5 gi|336251541|ref|YP_004586144.1| - 0.077 13.0 0.0 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 Putative virion membrane protein of plant and insect virus LapA_dom PF06305.11 gi|336251542|ref|YP_004586145.1| - 0.062 13.1 0.5 0.062 13.1 0.5 2.9 3 1 0 3 3 3 0 Lipopolysaccharide assembly protein A domain TssO PF17561.2 gi|336251543|ref|YP_004586146.1| - 0.22 11.7 3.3 0.51 10.4 3.3 1.5 1 0 0 1 1 1 0 Type VI secretion system, TssO DUF3180 PF11377.8 gi|336251543|ref|YP_004586146.1| - 0.31 11.2 2.0 2.9 8.0 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3180) DUF4192 PF13830.6 gi|336251544|ref|YP_004586147.1| - 6 6.8 9.6 0.23 11.5 2.4 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4192) ERGIC_N PF13850.6 gi|336251546|ref|YP_004586149.1| - 6.4 7.2 6.8 35 4.9 1.9 2.9 1 1 1 2 2 2 0 Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC) Trp_Tyr_perm PF03222.13 gi|336251547|ref|YP_004586150.1| - 0.032 13.3 1.5 0.038 13.0 1.5 1.0 1 0 0 1 1 1 0 Tryptophan/tyrosine permease family Wzy_C PF04932.15 gi|336251547|ref|YP_004586150.1| - 0.035 13.7 0.2 0.038 13.6 0.2 1.1 1 0 0 1 1 1 0 O-Antigen ligase DUF3265 PF11665.8 gi|336251547|ref|YP_004586150.1| - 0.27 11.5 1.2 0.32 11.2 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3265) Pap_E4 PF02711.14 gi|336251548|ref|YP_004586151.1| - 0.0083 17.1 0.3 0.024 15.6 0.2 1.9 2 0 0 2 2 2 1 E4 protein F5_F8_type_C PF00754.25 gi|336251548|ref|YP_004586151.1| - 0.21 11.7 6.0 0.13 12.4 0.5 2.6 1 1 0 2 2 2 0 F5/8 type C domain DUF2244 PF10003.9 gi|336251549|ref|YP_004586152.1| - 0.021 14.5 0.6 0.036 13.7 0.6 1.3 1 0 0 1 1 1 0 Integral membrane protein (DUF2244) TAT_signal PF10518.9 gi|336251550|ref|YP_004586153.1| - 0.026 14.4 0.4 0.026 14.4 0.4 2.4 3 0 0 3 3 3 0 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.9 gi|336251550|ref|YP_004586153.1| - 0.15 11.4 0.0 0.15 11.4 0.0 2.0 2 0 0 2 2 2 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal SHNi-TPR PF10516.9 gi|336251552|ref|YP_004586155.1| - 0.1 12.1 0.5 0.21 11.1 0.5 1.5 1 0 0 1 1 1 0 SHNi-TPR CBM60 PF16841.5 gi|336251552|ref|YP_004586155.1| - 0.17 12.3 4.2 1.9 9.0 0.2 3.6 3 2 0 3 3 3 0 Ca-dependent carbohydrate-binding module xylan-binding VCBS PF13517.6 gi|336251553|ref|YP_004586156.1| - 1.1e-11 45.2 40.9 2.6e-05 24.7 3.8 6.3 2 2 5 7 7 7 4 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella FG-GAP PF01839.23 gi|336251553|ref|YP_004586156.1| - 2.3e-09 37.2 20.2 0.099 12.8 0.2 6.1 6 0 0 6 6 6 4 FG-GAP repeat TcdB_toxin_midN PF12256.8 gi|336251553|ref|YP_004586156.1| - 0.0017 17.8 13.8 0.93 8.8 0.1 4.7 4 1 1 5 5 5 3 Insecticide toxin TcdB middle/N-terminal region PliI PF16743.5 gi|336251553|ref|YP_004586156.1| - 0.063 13.0 0.4 5.7 6.7 0.0 3.6 3 1 1 4 4 4 0 Periplasmic lysozyme inhibitor of I-type lysozyme Dockerin_1 PF00404.18 gi|336251553|ref|YP_004586156.1| - 1.1 9.5 9.6 27 5.1 0.0 4.8 5 0 0 5 5 5 0 Dockerin type I domain TAT_signal PF10518.9 gi|336251556|ref|YP_004586159.1| - 0.11 12.3 0.2 0.18 11.7 0.2 1.3 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF1816 PF08846.10 gi|336251556|ref|YP_004586159.1| - 0.21 11.6 1.0 1.9 8.5 0.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1816) Peptidase_S8 PF00082.22 gi|336251557|ref|YP_004586160.1| - 9.7e-20 71.0 2.3 1.5e-19 70.4 2.3 1.2 1 0 0 1 1 1 1 Subtilase family Peripla_BP_4 PF13407.6 gi|336251557|ref|YP_004586160.1| - 0.0024 17.5 0.7 0.16 11.5 0.2 2.5 3 0 0 3 3 3 2 Periplasmic binding protein domain CarboxypepD_reg PF13620.6 gi|336251558|ref|YP_004586161.1| - 0.00045 20.4 9.8 0.048 13.9 0.5 4.3 4 0 0 4 4 4 2 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|336251558|ref|YP_004586161.1| - 0.051 13.6 1.2 15 5.7 0.1 3.0 2 0 0 2 2 2 0 CarboxypepD_reg-like domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halopiger_xanaduensis_SH_6_uid68105/NC_015659.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halopiger_xanaduensis_SH_6_uid68105/NC_015659.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halopiger_xanaduensis_SH_6_uid68105/NC_015659.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halopiger_xanaduensis_SH_6_uid68105/NC_015659.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 12:32:51 2019 # [ok]