# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- IclR PF01614.13 gi|336251751|ref|YP_004585719.1| - 3.7e-27 94.5 0.0 7.8e-27 93.5 0.0 1.5 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|336251751|ref|YP_004585719.1| - 7.5e-11 41.4 0.0 1.4e-10 40.5 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|336251751|ref|YP_004585719.1| - 9.1e-08 31.6 0.0 1.6e-07 30.8 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|336251751|ref|YP_004585719.1| - 3.3e-07 29.9 0.0 1.5e-06 27.7 0.0 2.0 2 0 0 2 2 2 1 MarR family MarR_2 PF12802.2 gi|336251751|ref|YP_004585719.1| - 3.6e-07 29.7 0.0 9.3e-07 28.4 0.0 1.7 2 0 0 2 2 1 1 MarR family HTH_20 PF12840.2 gi|336251751|ref|YP_004585719.1| - 4.3e-06 26.4 0.1 9e-06 25.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|336251751|ref|YP_004585719.1| - 4.9e-06 25.8 0.0 8.6e-06 25.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|336251751|ref|YP_004585719.1| - 3e-05 23.6 0.1 0.00014 21.5 0.0 2.0 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|336251751|ref|YP_004585719.1| - 6.8e-05 22.4 0.2 0.00019 20.9 0.1 1.8 1 0 0 1 1 1 1 HTH domain HTH_27 PF13463.1 gi|336251751|ref|YP_004585719.1| - 0.00056 20.1 0.1 0.003 17.8 0.0 2.2 2 0 0 2 2 2 1 Winged helix DNA-binding domain B-block_TFIIIC PF04182.7 gi|336251751|ref|YP_004585719.1| - 0.0027 17.5 0.0 0.0042 16.9 0.0 1.5 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_40 PF14493.1 gi|336251751|ref|YP_004585719.1| - 0.0027 17.8 0.0 0.0064 16.6 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_10 PF04967.7 gi|336251751|ref|YP_004585719.1| - 0.003 17.1 0.0 0.0066 16.0 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain Rrf2 PF02082.15 gi|336251751|ref|YP_004585719.1| - 0.0045 17.0 0.1 0.013 15.6 0.0 1.8 2 0 0 2 2 1 1 Transcriptional regulator RepL PF05732.6 gi|336251751|ref|YP_004585719.1| - 0.0049 16.0 0.0 0.0088 15.2 0.0 1.5 1 0 0 1 1 1 1 Firmicute plasmid replication protein (RepL) HTH_23 PF13384.1 gi|336251751|ref|YP_004585719.1| - 0.0091 15.6 0.0 0.02 14.5 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_DeoR PF08220.7 gi|336251751|ref|YP_004585719.1| - 0.03 13.8 0.1 0.084 12.4 0.1 1.7 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_34 PF13601.1 gi|336251751|ref|YP_004585719.1| - 0.039 13.9 0.0 0.072 13.1 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain Penicillinase_R PF03965.11 gi|336251751|ref|YP_004585719.1| - 0.044 13.8 0.0 0.3 11.2 0.0 2.3 2 0 0 2 2 2 0 Penicillinase repressor Mga PF05043.8 gi|336251751|ref|YP_004585719.1| - 0.045 14.0 0.0 1.4 9.2 0.0 2.4 2 0 0 2 2 2 0 Mga helix-turn-helix domain UPF0122 PF04297.9 gi|336251751|ref|YP_004585719.1| - 0.05 13.6 0.6 0.97 9.4 0.0 2.8 3 0 0 3 3 3 0 Putative helix-turn-helix protein, YlxM / p13 like GerE PF00196.14 gi|336251751|ref|YP_004585719.1| - 0.08 12.2 0.0 0.24 10.7 0.0 1.7 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family HTH_36 PF13730.1 gi|336251751|ref|YP_004585719.1| - 0.083 13.0 0.0 0.17 12.0 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain DUF4423 PF14394.1 gi|336251751|ref|YP_004585719.1| - 0.092 12.2 0.0 0.24 10.9 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) LexA_DNA_bind PF01726.11 gi|336251751|ref|YP_004585719.1| - 0.1 12.1 0.1 0.28 10.7 0.0 1.8 1 1 0 1 1 1 0 LexA DNA binding domain RDD PF06271.7 gi|336251753|ref|YP_004585721.1| - 3.1e-15 56.2 3.3 3.6e-15 56.0 2.3 1.1 1 0 0 1 1 1 1 RDD family TraP PF07296.6 gi|336251753|ref|YP_004585721.1| - 0.041 12.8 0.1 0.067 12.1 0.1 1.4 1 0 0 1 1 1 0 TraP protein MatC_N PF07158.6 gi|336251753|ref|YP_004585721.1| - 0.92 9.3 4.5 1.3 8.8 3.1 1.4 1 1 0 1 1 1 0 Dicarboxylate carrier protein MatC N-terminus EII-Sor PF03609.9 gi|336251754|ref|YP_004585722.1| - 0.99 8.6 6.6 0.035 13.3 0.5 1.5 2 0 0 2 2 2 0 PTS system sorbose-specific iic component DDE_Tnp_1 PF01609.16 gi|336251755|ref|YP_004585723.1| - 2.7e-20 72.8 1.2 4.3e-20 72.1 0.8 1.3 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|336251755|ref|YP_004585723.1| - 5.3e-05 23.0 0.2 8.6e-05 22.3 0.1 1.3 1 0 0 1 1 1 1 Transposase DDE domain DUF1772 PF08592.6 gi|336251755|ref|YP_004585723.1| - 0.0032 17.2 0.0 0.0054 16.4 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1772) DDE_Tnp_1_6 PF13751.1 gi|336251755|ref|YP_004585723.1| - 0.0038 17.2 0.5 0.0038 17.2 0.4 1.7 2 0 0 2 2 2 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.1 gi|336251755|ref|YP_004585723.1| - 0.0041 17.2 1.6 0.014 15.5 1.1 1.9 1 1 0 1 1 1 1 Transposase DDE domain HrcA_DNA-bdg PF03444.10 gi|336251756|ref|YP_004585724.1| - 4.6e-27 93.2 0.0 6.5e-27 92.7 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Rrf2 PF02082.15 gi|336251756|ref|YP_004585724.1| - 1.7e-06 28.0 0.0 3.4e-06 27.0 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator HTH_11 PF08279.7 gi|336251756|ref|YP_004585724.1| - 2.7e-06 26.9 0.0 5.4e-06 25.9 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.2 gi|336251756|ref|YP_004585724.1| - 2.9e-05 23.7 0.0 4.6e-05 23.1 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|336251756|ref|YP_004585724.1| - 0.0012 18.4 0.0 0.0033 17.0 0.0 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|336251756|ref|YP_004585724.1| - 0.0022 17.5 0.0 0.0046 16.5 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|336251756|ref|YP_004585724.1| - 0.0073 16.5 0.0 0.014 15.7 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain RuvB_C PF05491.8 gi|336251756|ref|YP_004585724.1| - 0.0091 15.5 0.0 0.014 14.9 0.0 1.4 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB C-terminus Phage_rep_org_N PF09681.5 gi|336251756|ref|YP_004585724.1| - 0.011 15.2 0.0 0.024 14.2 0.0 1.5 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_IclR PF09339.5 gi|336251756|ref|YP_004585724.1| - 0.043 13.4 0.1 0.07 12.7 0.1 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain LexA_DNA_bind PF01726.11 gi|336251756|ref|YP_004585724.1| - 0.05 13.1 0.1 0.087 12.3 0.0 1.3 1 0 0 1 1 1 0 LexA DNA binding domain Amidohydro_1 PF01979.15 gi|336251757|ref|YP_004585725.1| - 3.1e-45 155.2 0.1 3.8e-45 154.9 0.1 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|336251757|ref|YP_004585725.1| - 1.7e-13 51.2 2.0 6.3e-13 49.3 1.4 2.0 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|336251757|ref|YP_004585725.1| - 4.6e-10 39.2 0.7 1.3e-09 37.7 0.0 2.0 2 0 0 2 2 2 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|336251757|ref|YP_004585725.1| - 0.00081 19.1 0.9 0.0034 17.1 0.0 2.5 3 0 0 3 3 3 1 Amidohydrolase A_deaminase PF00962.17 gi|336251757|ref|YP_004585725.1| - 0.0012 17.8 0.0 0.0022 16.9 0.0 1.4 1 0 0 1 1 1 1 Adenosine/AMP deaminase Amino_oxidase PF01593.19 gi|336251758|ref|YP_004585726.1| - 1e-24 87.4 0.2 1.9e-12 47.0 0.0 2.1 2 0 0 2 2 2 2 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.1 gi|336251758|ref|YP_004585726.1| - 3.7e-14 52.4 0.0 8.7e-14 51.3 0.0 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|336251758|ref|YP_004585726.1| - 5.9e-07 28.7 0.1 0.00044 19.2 0.1 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|336251758|ref|YP_004585726.1| - 1.3e-06 28.6 0.2 0.00074 19.6 0.1 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|336251758|ref|YP_004585726.1| - 3.7e-05 23.5 0.2 0.086 12.6 0.0 2.3 2 0 0 2 2 2 2 FAD-NAD(P)-binding Thi4 PF01946.12 gi|336251758|ref|YP_004585726.1| - 0.0041 16.2 0.1 0.0074 15.4 0.1 1.4 1 0 0 1 1 1 1 Thi4 family Pyr_redox PF00070.22 gi|336251758|ref|YP_004585726.1| - 0.0058 17.0 0.1 0.092 13.1 0.3 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FMO-like PF00743.14 gi|336251758|ref|YP_004585726.1| - 0.014 13.5 0.0 0.019 13.1 0.0 1.1 1 0 0 1 1 1 0 Flavin-binding monooxygenase-like FAD_binding_3 PF01494.14 gi|336251758|ref|YP_004585726.1| - 0.097 11.7 0.5 0.14 11.1 0.3 1.2 1 0 0 1 1 1 0 FAD binding domain Pyr_redox_2 PF07992.9 gi|336251758|ref|YP_004585726.1| - 0.1 12.4 0.0 0.15 11.8 0.0 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|336251758|ref|YP_004585726.1| - 0.1 11.3 0.5 1.2 7.8 0.2 2.1 2 0 0 2 2 2 0 FAD binding domain 3HCDH_N PF02737.13 gi|336251758|ref|YP_004585726.1| - 0.16 11.6 0.2 0.26 10.9 0.1 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Ferrochelatase PF00762.14 gi|336251759|ref|YP_004585727.1| - 4.4e-69 232.8 0.0 4.9e-69 232.6 0.0 1.0 1 0 0 1 1 1 1 Ferrochelatase Glyco_trans_4_4 PF13579.1 gi|336251759|ref|YP_004585727.1| - 2.3e-07 31.1 0.1 1.6e-05 25.0 0.0 2.3 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain CbiX PF01903.12 gi|336251759|ref|YP_004585727.1| - 3.8e-06 26.9 0.4 0.00058 19.9 0.0 2.5 2 1 0 2 2 2 2 CbiX URO-D PF01208.12 gi|336251760|ref|YP_004585728.1| - 1e-108 363.3 0.0 1.1e-108 363.2 0.0 1.0 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) DUF934 PF06073.7 gi|336251760|ref|YP_004585728.1| - 0.03 14.0 0.0 0.22 11.2 0.0 2.1 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF934) DUF1308 PF07000.6 gi|336251762|ref|YP_004585730.1| - 0.029 13.0 0.2 0.035 12.7 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1308) CbiQ PF02361.11 gi|336251763|ref|YP_004585731.1| - 0.58 9.6 9.4 0.71 9.3 6.5 1.1 1 0 0 1 1 1 0 Cobalt transport protein DUF1616 PF07760.6 gi|336251765|ref|YP_004585733.1| - 2.3e-78 263.2 0.0 2.6e-78 263.0 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) ABC_tran PF00005.22 gi|336251766|ref|YP_004585734.1| - 3.7e-34 117.9 0.0 7.2e-34 117.0 0.0 1.5 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.18 gi|336251766|ref|YP_004585734.1| - 2.2e-10 40.4 5.6 3e-10 39.9 3.9 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region AAA_21 PF13304.1 gi|336251766|ref|YP_004585734.1| - 1.5e-05 25.1 0.0 0.026 14.4 0.0 2.3 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|336251766|ref|YP_004585734.1| - 7.4e-05 22.0 0.8 0.00084 18.6 0.6 2.3 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_17 PF13207.1 gi|336251766|ref|YP_004585734.1| - 0.00067 20.4 0.1 0.0022 18.8 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|336251766|ref|YP_004585734.1| - 0.00091 18.7 0.1 0.0021 17.5 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|336251766|ref|YP_004585734.1| - 0.0042 17.1 1.0 0.013 15.4 0.7 1.9 1 1 0 1 1 1 1 AAA ATPase domain ABC_ATPase PF09818.4 gi|336251766|ref|YP_004585734.1| - 0.0042 15.7 0.5 0.0067 15.0 0.0 1.5 2 0 0 2 2 2 1 Predicted ATPase of the ABC class DUF258 PF03193.11 gi|336251766|ref|YP_004585734.1| - 0.0045 16.1 0.0 0.0083 15.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 IstB_IS21 PF01695.12 gi|336251766|ref|YP_004585734.1| - 0.01 15.2 0.0 0.29 10.5 0.0 2.3 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_22 PF13401.1 gi|336251766|ref|YP_004585734.1| - 0.011 15.9 1.0 0.13 12.3 0.3 2.8 2 1 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|336251766|ref|YP_004585734.1| - 0.027 13.8 0.1 0.22 10.8 0.0 2.3 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.1 gi|336251766|ref|YP_004585734.1| - 0.061 13.2 1.0 0.54 10.2 0.7 2.4 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_18 PF13238.1 gi|336251766|ref|YP_004585734.1| - 0.067 13.4 0.1 0.31 11.3 0.1 1.9 1 1 1 2 2 2 0 AAA domain Synapsin_N PF10581.4 gi|336251766|ref|YP_004585734.1| - 0.27 11.0 1.8 1.1 9.1 0.0 2.6 3 0 0 3 3 3 0 Synapsin N-terminal DUF457 PF04307.9 gi|336251767|ref|YP_004585735.1| - 2.6e-12 46.3 7.5 3.5e-12 45.9 5.2 1.2 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) DUF4184 PF13803.1 gi|336251767|ref|YP_004585735.1| - 5.3 6.2 10.6 1.1 8.5 0.1 2.9 2 1 1 3 3 3 0 Domain of unknown function (DUF4184) PqqD PF05402.7 gi|336251768|ref|YP_004585736.1| - 6.2e-17 61.3 0.2 7.5e-17 61.1 0.1 1.1 1 0 0 1 1 1 1 Coenzyme PQQ synthesis protein D (PqqD) Transglut_core3 PF13471.1 gi|336251769|ref|YP_004585737.1| - 1.7e-17 63.3 0.0 2.1e-17 62.9 0.0 1.1 1 0 0 1 1 1 1 Transglutaminase-like superfamily Asn_synthase PF00733.16 gi|336251770|ref|YP_004585738.1| - 1.5e-34 119.6 0.0 2.4e-34 118.9 0.0 1.3 1 0 0 1 1 1 1 Asparagine synthase GATase_7 PF13537.1 gi|336251770|ref|YP_004585738.1| - 1.8e-26 92.2 0.0 2.9e-26 91.6 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_6 PF13522.1 gi|336251770|ref|YP_004585738.1| - 3.3e-25 88.5 0.0 5.3e-25 87.9 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain DUF3700 PF12481.3 gi|336251770|ref|YP_004585738.1| - 0.00012 21.3 0.0 0.00021 20.5 0.0 1.3 1 0 0 1 1 1 1 Aluminium induced protein GATase_2 PF00310.16 gi|336251770|ref|YP_004585738.1| - 0.0036 16.0 0.0 0.064 11.9 0.0 2.1 2 0 0 2 2 2 1 Glutamine amidotransferases class-II Hpr_kinase_C PF07475.7 gi|336251772|ref|YP_004585740.1| - 0.00011 21.5 0.0 0.00022 20.5 0.0 1.4 1 0 0 1 1 1 1 HPr Serine kinase C-terminal domain AAA_29 PF13555.1 gi|336251772|ref|YP_004585740.1| - 0.0023 17.4 0.0 0.0046 16.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|336251772|ref|YP_004585740.1| - 0.0028 17.6 0.0 0.012 15.6 0.0 1.9 1 1 1 2 2 2 1 AAA ATPase domain AAA_14 PF13173.1 gi|336251772|ref|YP_004585740.1| - 0.0057 16.5 0.0 0.0091 15.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|336251772|ref|YP_004585740.1| - 0.0076 16.1 0.0 0.015 15.2 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|336251772|ref|YP_004585740.1| - 0.011 15.7 0.0 0.024 14.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|336251772|ref|YP_004585740.1| - 0.026 14.8 0.0 0.043 14.1 0.0 1.3 1 0 0 1 1 1 0 ABC transporter CoaE PF01121.15 gi|336251772|ref|YP_004585740.1| - 0.036 13.4 0.0 0.057 12.8 0.0 1.2 1 0 0 1 1 1 0 Dephospho-CoA kinase PEPCK_ATP PF01293.15 gi|336251772|ref|YP_004585740.1| - 0.052 12.0 0.0 0.069 11.6 0.0 1.1 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxykinase Zeta_toxin PF06414.7 gi|336251772|ref|YP_004585740.1| - 0.14 11.1 0.0 0.22 10.5 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin AAA_10 PF12846.2 gi|336251772|ref|YP_004585740.1| - 0.16 11.3 0.0 0.35 10.2 0.0 1.5 2 0 0 2 2 2 0 AAA-like domain NTP_transf_5 PF14907.1 gi|336251773|ref|YP_004585741.1| - 1.4e-61 208.0 0.4 2e-61 207.4 0.2 1.3 1 0 0 1 1 1 1 Uncharacterised nucleotidyltransferase Sulfatase PF00884.18 gi|336251774|ref|YP_004585742.1| - 0.0025 17.0 0.1 0.0039 16.4 0.0 1.3 1 0 0 1 1 1 1 Sulfatase Polysacc_synt PF01943.12 gi|336251775|ref|YP_004585743.1| - 2e-33 115.8 24.3 2e-33 115.8 16.8 2.4 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.1 gi|336251775|ref|YP_004585743.1| - 1.2e-26 93.6 23.6 1.2e-26 93.6 16.3 2.1 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|336251775|ref|YP_004585743.1| - 2.4e-14 53.3 17.2 2.4e-14 53.3 11.9 3.6 2 1 2 4 4 4 2 Polysaccharide biosynthesis C-terminal domain MVIN PF03023.9 gi|336251775|ref|YP_004585743.1| - 2.8e-13 49.1 17.3 2.8e-13 49.1 12.0 2.0 2 0 0 2 2 2 1 MviN-like protein Sulfatase PF00884.18 gi|336251776|ref|YP_004585744.1| - 3.6e-27 95.3 0.1 4.9e-27 94.9 0.1 1.2 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|336251776|ref|YP_004585744.1| - 1.9e-06 27.4 1.9 0.0044 16.3 0.0 2.6 2 1 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase Metalloenzyme PF01676.13 gi|336251776|ref|YP_004585744.1| - 0.0001 21.7 0.0 0.00021 20.7 0.0 1.5 1 0 0 1 1 1 1 Metalloenzyme superfamily Sulfatase_C PF14707.1 gi|336251776|ref|YP_004585744.1| - 0.11 12.8 0.6 0.32 11.2 0.1 2.0 1 1 1 2 2 2 0 C-terminal region of aryl-sulfatase Sulfatase PF00884.18 gi|336251778|ref|YP_004585746.1| - 3.1e-44 151.4 0.1 4.3e-44 150.9 0.1 1.2 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|336251778|ref|YP_004585746.1| - 1.3e-09 37.9 0.2 1.7e-05 24.3 0.0 2.3 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase Ferritin PF00210.19 gi|336251778|ref|YP_004585746.1| - 0.095 12.4 0.0 0.77 9.5 0.0 2.4 2 0 0 2 2 2 0 Ferritin-like domain DUF229 PF02995.12 gi|336251778|ref|YP_004585746.1| - 0.17 10.2 0.0 0.21 9.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF229) Glycos_transf_1 PF00534.15 gi|336251779|ref|YP_004585747.1| - 8.9e-33 113.1 0.0 1.7e-32 112.1 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|336251779|ref|YP_004585747.1| - 3e-17 63.0 0.0 2.6e-16 60.0 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|336251779|ref|YP_004585747.1| - 4.9e-12 46.2 1.1 6.3e-12 45.9 0.2 1.7 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|336251779|ref|YP_004585747.1| - 1.2e-09 38.1 0.1 2.2e-09 37.2 0.1 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|336251779|ref|YP_004585747.1| - 5.1e-08 33.0 0.0 1e-07 32.1 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Cutinase PF01083.17 gi|336251779|ref|YP_004585747.1| - 0.066 12.9 0.0 0.14 11.9 0.0 1.5 1 0 0 1 1 1 0 Cutinase Glyco_transf_5 PF08323.6 gi|336251779|ref|YP_004585747.1| - 0.073 12.5 0.0 0.15 11.5 0.0 1.6 1 0 0 1 1 1 0 Starch synthase catalytic domain Glyco_trans_4_2 PF13477.1 gi|336251779|ref|YP_004585747.1| - 0.087 12.6 0.0 0.42 10.4 0.0 2.1 2 0 0 2 2 2 0 Glycosyl transferase 4-like Phosphodiest PF01663.17 gi|336251780|ref|YP_004585748.1| - 7.8e-45 153.7 0.5 2.5e-43 148.8 0.4 2.0 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Metalloenzyme PF01676.13 gi|336251780|ref|YP_004585748.1| - 0.00011 21.7 0.1 0.00022 20.7 0.1 1.5 1 0 0 1 1 1 1 Metalloenzyme superfamily Glycos_transf_1 PF00534.15 gi|336251781|ref|YP_004585749.1| - 1.3e-46 158.1 0.0 1.8e-46 157.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|336251781|ref|YP_004585749.1| - 7.7e-26 90.8 0.0 1.6e-25 89.8 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|336251781|ref|YP_004585749.1| - 2.4e-16 59.7 0.0 5e-16 58.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|336251781|ref|YP_004585749.1| - 1e-12 48.4 1.5 1e-12 48.4 1.0 1.8 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|336251781|ref|YP_004585749.1| - 1.9e-08 34.2 0.1 3e-08 33.5 0.1 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 DUF498 PF04430.9 gi|336251781|ref|YP_004585749.1| - 0.0011 18.4 0.0 0.0024 17.3 0.0 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF498/DUF598) Glyco_trans_4_2 PF13477.1 gi|336251781|ref|YP_004585749.1| - 0.043 13.6 0.0 0.075 12.8 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase 4-like Sulfatase PF00884.18 gi|336251782|ref|YP_004585750.1| - 6.5e-48 163.4 0.4 7.9e-48 163.2 0.3 1.1 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|336251782|ref|YP_004585750.1| - 1.9e-11 43.9 0.2 2.1e-05 24.0 0.0 2.3 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF229 PF02995.12 gi|336251782|ref|YP_004585750.1| - 0.0003 19.3 0.0 0.00048 18.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF229) Metalloenzyme PF01676.13 gi|336251782|ref|YP_004585750.1| - 0.0012 18.3 0.0 0.25 10.6 0.0 2.2 2 0 0 2 2 2 2 Metalloenzyme superfamily PG_binding_2 PF08823.6 gi|336251782|ref|YP_004585750.1| - 0.013 15.5 0.4 0.42 10.7 0.0 3.1 3 0 0 3 3 3 0 Putative peptidoglycan binding domain Glycos_transf_1 PF00534.15 gi|336251783|ref|YP_004585751.1| - 5.9e-32 110.4 0.0 8.4e-32 109.9 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|336251783|ref|YP_004585751.1| - 9.3e-21 74.3 0.6 3e-19 69.4 0.0 2.5 2 1 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|336251783|ref|YP_004585751.1| - 1.3e-20 74.1 4.1 1.3e-20 74.1 2.8 2.5 2 1 1 3 3 3 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|336251783|ref|YP_004585751.1| - 7.8e-16 58.2 0.0 1.6e-15 57.2 0.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|336251783|ref|YP_004585751.1| - 0.0029 17.8 0.1 0.0071 16.5 0.1 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 PAPS_reduct PF01507.14 gi|336251784|ref|YP_004585752.1| - 2.2e-18 66.6 0.0 2.7e-14 53.3 0.0 3.1 2 1 0 2 2 2 2 Phosphoadenosine phosphosulfate reductase family ATP_bind_3 PF01171.15 gi|336251784|ref|YP_004585752.1| - 0.0048 16.4 0.0 0.0081 15.6 0.0 1.3 1 0 0 1 1 1 1 PP-loop family ATP_bind_4 PF01902.12 gi|336251784|ref|YP_004585752.1| - 0.011 15.1 0.0 0.021 14.2 0.0 1.5 2 0 0 2 2 2 0 ATP-binding region PHO4 PF01384.15 gi|336251785|ref|YP_004585753.1| - 2.3e-48 164.5 35.9 4.7e-48 163.5 24.1 1.8 1 1 0 1 1 1 1 Phosphate transporter family DUF3353 PF11833.3 gi|336251785|ref|YP_004585753.1| - 8.6 5.7 22.9 0.55 9.6 1.9 3.5 3 2 1 4 4 4 0 Protein of unknown function (DUF3353) Phosphodiest PF01663.17 gi|336251786|ref|YP_004585754.1| - 6e-54 183.7 0.1 7.3e-54 183.4 0.0 1.0 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.18 gi|336251786|ref|YP_004585754.1| - 0.0077 15.4 3.2 0.071 12.2 0.6 2.8 3 0 0 3 3 3 1 Sulfatase DUF2063 PF09836.4 gi|336251786|ref|YP_004585754.1| - 0.03 14.2 0.2 0.069 13.1 0.1 1.6 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2063) His_Phos_2 PF00328.17 gi|336251786|ref|YP_004585754.1| - 0.093 12.0 0.1 0.13 11.6 0.0 1.1 1 0 0 1 1 1 0 Histidine phosphatase superfamily (branch 2) Octopine_DH PF02317.12 gi|336251786|ref|YP_004585754.1| - 0.11 12.1 0.0 0.2 11.3 0.0 1.3 1 0 0 1 1 1 0 NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain MarR PF01047.17 gi|336251787|ref|YP_004585755.1| - 3.3e-06 26.7 0.2 0.00012 21.7 0.0 2.4 2 0 0 2 2 2 1 MarR family MarR_2 PF12802.2 gi|336251787|ref|YP_004585755.1| - 4.4e-06 26.2 0.8 2.8e-05 23.6 0.1 2.4 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.1 gi|336251787|ref|YP_004585755.1| - 8.8e-06 25.0 0.0 0.00012 21.4 0.0 2.4 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|336251787|ref|YP_004585755.1| - 0.0071 15.8 1.0 0.12 11.9 0.0 2.7 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain Sigma70_r4 PF04545.11 gi|336251787|ref|YP_004585755.1| - 0.019 14.2 0.0 0.046 13.0 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_27 PF13463.1 gi|336251787|ref|YP_004585755.1| - 0.044 14.1 0.0 0.14 12.5 0.0 1.9 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_1 PF00126.22 gi|336251787|ref|YP_004585755.1| - 0.16 11.7 1.4 2.8 7.7 0.1 2.4 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family Adeno_terminal PF02459.10 gi|336251787|ref|YP_004585755.1| - 0.52 8.4 2.8 0.73 7.9 1.9 1.2 1 0 0 1 1 1 0 Adenoviral DNA terminal protein NUDIX PF00293.23 gi|336251788|ref|YP_004585756.1| - 4e-17 62.1 0.3 4.9e-17 61.8 0.2 1.1 1 0 0 1 1 1 1 NUDIX domain NUDIX_2 PF13869.1 gi|336251788|ref|YP_004585756.1| - 0.0051 16.1 0.0 0.0068 15.7 0.0 1.2 1 0 0 1 1 1 1 Nucleotide hydrolase NTP_transferase PF00483.18 gi|336251789|ref|YP_004585757.1| - 3.4e-33 115.0 0.0 4.1e-33 114.7 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|336251789|ref|YP_004585757.1| - 8.2e-09 35.7 0.0 1.1e-08 35.3 0.0 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|336251789|ref|YP_004585757.1| - 0.0026 17.3 0.0 0.0042 16.6 0.0 1.4 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Glycos_transf_2 PF00535.21 gi|336251790|ref|YP_004585758.1| - 1.1e-24 87.0 0.0 1.5e-24 86.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|336251790|ref|YP_004585758.1| - 9.5e-10 38.6 0.0 1.4e-09 38.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.1 gi|336251790|ref|YP_004585758.1| - 0.011 15.0 0.3 0.028 13.7 0.0 1.8 2 1 0 2 2 2 0 Glycosyl transferase family 21 NTP_transf_3 PF12804.2 gi|336251790|ref|YP_004585758.1| - 0.023 14.7 0.0 0.71 9.9 0.0 2.1 1 1 1 2 2 2 0 MobA-like NTP transferase domain Glyco_tranf_2_4 PF13704.1 gi|336251790|ref|YP_004585758.1| - 0.063 13.6 0.0 0.11 12.8 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 2 TIM-br_sig_trns PF09370.5 gi|336251790|ref|YP_004585758.1| - 0.079 12.0 0.1 0.13 11.2 0.1 1.3 1 0 0 1 1 1 0 TIM-barrel signal transduction protein PHD PF00628.24 gi|336251791|ref|YP_004585759.1| - 0.069 12.8 1.3 0.097 12.3 0.9 1.2 1 0 0 1 1 1 0 PHD-finger Prok-RING_1 PF14446.1 gi|336251791|ref|YP_004585759.1| - 0.11 12.2 2.1 0.23 11.1 1.5 1.5 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 zf-C4_ClpX PF06689.8 gi|336251791|ref|YP_004585759.1| - 0.42 10.1 6.5 1.9 8.0 4.5 2.0 1 1 0 1 1 1 0 ClpX C4-type zinc finger Epimerase PF01370.16 gi|336251792|ref|YP_004585760.1| - 1.3e-42 145.8 0.8 1.7e-42 145.5 0.5 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|336251792|ref|YP_004585760.1| - 2.8e-12 46.1 0.2 3.9e-12 45.6 0.1 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|336251792|ref|YP_004585760.1| - 1.3e-10 40.4 0.8 3.6e-10 39.0 0.6 1.8 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.7 gi|336251792|ref|YP_004585760.1| - 7.2e-10 38.2 0.2 1.9e-07 30.2 0.0 2.2 2 0 0 2 2 2 2 Male sterility protein Polysacc_synt_2 PF02719.10 gi|336251792|ref|YP_004585760.1| - 9e-10 37.9 0.3 4.3e-08 32.3 0.2 2.7 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein adh_short PF00106.20 gi|336251792|ref|YP_004585760.1| - 6.1e-06 26.2 0.7 0.0041 17.0 0.0 2.5 2 1 1 3 3 3 2 short chain dehydrogenase NAD_binding_10 PF13460.1 gi|336251792|ref|YP_004585760.1| - 9.2e-05 22.5 0.1 0.00013 22.0 0.1 1.3 1 0 0 1 1 1 1 NADH(P)-binding 2OG-FeII_Oxy_4 PF13661.1 gi|336251792|ref|YP_004585760.1| - 0.02 14.5 0.0 0.047 13.3 0.0 1.6 1 0 0 1 1 1 0 2OG-Fe(II) oxygenase superfamily KR PF08659.5 gi|336251792|ref|YP_004585760.1| - 0.091 12.4 0.5 0.59 9.7 0.1 2.1 1 1 1 2 2 2 0 KR domain Epimerase PF01370.16 gi|336251793|ref|YP_004585761.1| - 3.4e-51 173.9 0.0 4.1e-51 173.7 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|336251793|ref|YP_004585761.1| - 3.7e-19 68.6 0.0 4.6e-19 68.3 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.10 gi|336251793|ref|YP_004585761.1| - 1.4e-17 63.5 0.0 2.7e-16 59.3 0.0 2.5 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.14 gi|336251793|ref|YP_004585761.1| - 3.8e-15 55.3 0.0 5.7e-15 54.7 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.1 gi|336251793|ref|YP_004585761.1| - 3.3e-14 53.2 0.0 4.8e-14 52.7 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding NAD_binding_4 PF07993.7 gi|336251793|ref|YP_004585761.1| - 5.6e-14 51.6 0.1 9.1e-11 41.1 0.1 2.3 1 1 0 1 1 1 1 Male sterility protein NmrA PF05368.8 gi|336251793|ref|YP_004585761.1| - 2.3e-07 30.3 0.0 1.3e-06 27.8 0.0 2.0 1 1 0 1 1 1 1 NmrA-like family adh_short PF00106.20 gi|336251793|ref|YP_004585761.1| - 2.3e-06 27.6 0.4 2.2e-05 24.4 0.1 2.6 3 0 0 3 3 3 1 short chain dehydrogenase TrkA_N PF02254.13 gi|336251793|ref|YP_004585761.1| - 8.8e-05 22.4 0.0 0.00015 21.7 0.0 1.4 1 0 0 1 1 1 1 TrkA-N domain KR PF08659.5 gi|336251793|ref|YP_004585761.1| - 0.013 15.1 0.4 0.074 12.7 0.2 2.3 2 1 0 2 2 2 0 KR domain NAD_binding_7 PF13241.1 gi|336251793|ref|YP_004585761.1| - 0.016 15.4 0.0 0.027 14.7 0.0 1.3 1 0 0 1 1 1 0 Putative NAD(P)-binding Saccharop_dh PF03435.13 gi|336251793|ref|YP_004585761.1| - 0.099 11.6 0.0 0.2 10.5 0.0 1.5 2 0 0 2 2 2 0 Saccharopine dehydrogenase RNHCP PF12647.2 gi|336251794|ref|YP_004585762.1| - 0.02 14.7 1.0 0.025 14.3 0.7 1.2 1 0 0 1 1 1 0 RNHCP domain TerY-C PF15616.1 gi|336251794|ref|YP_004585762.1| - 0.41 10.5 2.7 0.43 10.5 1.9 1.1 1 0 0 1 1 1 0 TerY-C metal binding domain BPD_transp_1 PF00528.17 gi|336251795|ref|YP_004585763.1| - 1.4e-15 57.2 16.9 1.4e-15 57.2 11.7 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ApoO PF09769.4 gi|336251795|ref|YP_004585763.1| - 0.74 9.5 4.4 1.2 8.8 2.5 1.7 2 0 0 2 2 2 0 Apolipoprotein O BPD_transp_1 PF00528.17 gi|336251796|ref|YP_004585764.1| - 2.3e-19 69.6 16.3 2.3e-19 69.6 11.3 2.1 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_8 PF13416.1 gi|336251797|ref|YP_004585765.1| - 1.4e-17 64.3 0.0 2.5e-17 63.5 0.0 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|336251797|ref|YP_004585765.1| - 3.6e-09 36.7 0.2 5.9e-09 36.0 0.1 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.4 gi|336251797|ref|YP_004585765.1| - 0.03 14.3 3.6 0.03 14.3 2.5 2.0 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence ABC_tran PF00005.22 gi|336251798|ref|YP_004585766.1| - 9.7e-33 113.3 0.0 1.6e-32 112.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|336251798|ref|YP_004585766.1| - 7.4e-08 32.6 0.0 6.7e-05 22.9 0.0 2.1 1 1 0 1 1 1 1 AAA domain Rad17 PF03215.10 gi|336251798|ref|YP_004585766.1| - 0.00014 20.6 0.0 0.00019 20.2 0.0 1.1 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA_15 PF13175.1 gi|336251798|ref|YP_004585766.1| - 0.00073 18.6 0.0 0.05 12.6 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain SMC_N PF02463.14 gi|336251798|ref|YP_004585766.1| - 0.0014 17.9 0.2 0.078 12.1 0.1 2.2 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain TOBE_2 PF08402.5 gi|336251798|ref|YP_004585766.1| - 0.0016 18.4 0.4 0.03 14.3 0.2 2.6 1 1 0 1 1 1 1 TOBE domain DUF258 PF03193.11 gi|336251798|ref|YP_004585766.1| - 0.0026 16.9 0.0 0.0045 16.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|336251798|ref|YP_004585766.1| - 0.0047 16.4 0.3 0.01 15.3 0.2 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|336251798|ref|YP_004585766.1| - 0.0098 16.2 0.0 0.013 15.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|336251798|ref|YP_004585766.1| - 0.019 14.9 0.1 0.04 13.9 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_17 PF13207.1 gi|336251798|ref|YP_004585766.1| - 0.033 14.9 0.0 0.073 13.8 0.0 1.7 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|336251798|ref|YP_004585766.1| - 0.036 13.1 0.1 0.086 11.9 0.0 1.6 2 0 0 2 2 2 0 Zeta toxin AAA_22 PF13401.1 gi|336251798|ref|YP_004585766.1| - 0.053 13.6 0.0 0.12 12.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|336251798|ref|YP_004585766.1| - 0.069 13.0 0.0 0.14 12.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|336251798|ref|YP_004585766.1| - 0.07 12.8 0.0 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_10 PF12846.2 gi|336251798|ref|YP_004585766.1| - 0.11 11.9 2.1 1.2 8.4 0.2 2.2 1 1 1 2 2 2 0 AAA-like domain AAA_33 PF13671.1 gi|336251798|ref|YP_004585766.1| - 0.12 12.2 0.3 0.23 11.3 0.2 1.7 1 1 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|336251798|ref|YP_004585766.1| - 0.18 10.6 0.1 0.29 9.9 0.1 1.2 1 0 0 1 1 1 0 NB-ARC domain Glyco_hydro_3_C PF01915.17 gi|336251799|ref|YP_004585767.1| - 7.4e-52 176.1 0.0 4.3e-51 173.6 0.0 2.1 1 1 0 1 1 1 1 Glycosyl hydrolase family 3 C-terminal domain Glyco_hydro_3 PF00933.16 gi|336251799|ref|YP_004585767.1| - 3.5e-45 154.2 0.0 6.8e-45 153.3 0.0 1.4 1 1 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain Fn3-like PF14310.1 gi|336251799|ref|YP_004585767.1| - 5.8e-24 83.8 1.5 7.4e-23 80.2 0.3 2.6 2 0 0 2 2 2 1 Fibronectin type III-like domain CBM_6 PF03422.10 gi|336251799|ref|YP_004585767.1| - 5.1e-15 55.7 0.7 1e-14 54.7 0.1 1.9 2 0 0 2 2 2 1 Carbohydrate binding module (family 6) CARDB PF07705.6 gi|336251799|ref|YP_004585767.1| - 0.0056 16.6 0.0 0.018 15.0 0.0 1.8 1 0 0 1 1 1 1 CARDB RicinB_lectin_2 PF14200.1 gi|336251799|ref|YP_004585767.1| - 0.0063 16.8 0.0 0.7 10.2 0.0 2.6 2 0 0 2 2 2 1 Ricin-type beta-trefoil lectin domain-like Fascin PF06268.8 gi|336251799|ref|YP_004585767.1| - 0.062 13.4 0.0 0.28 11.2 0.0 2.1 1 1 1 2 2 2 0 Fascin domain DUF11 PF01345.13 gi|336251799|ref|YP_004585767.1| - 0.077 13.0 2.7 0.079 13.0 0.1 2.4 3 0 0 3 3 3 0 Domain of unknown function DUF11 NPCBM_assoc PF10633.4 gi|336251799|ref|YP_004585767.1| - 0.18 11.8 4.1 3.2 7.8 0.1 3.8 4 0 0 4 4 4 0 NPCBM-associated, NEW3 domain of alpha-galactosidase KGG PF10685.4 gi|336251799|ref|YP_004585767.1| - 8.6 6.4 8.0 1.5 8.8 0.6 3.0 3 0 0 3 3 3 0 Stress-induced bacterial acidophilic repeat motif Glyco_hydro_31 PF01055.21 gi|336251800|ref|YP_004585768.1| - 1.8e-116 389.5 4.5 2.4e-116 389.1 3.1 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 31 Gal_mutarotas_2 PF13802.1 gi|336251800|ref|YP_004585768.1| - 0.0024 17.6 2.2 0.0053 16.5 0.4 2.5 2 1 0 2 2 2 1 Galactose mutarotase-like IclR PF01614.13 gi|336251801|ref|YP_004585769.1| - 1.3e-39 134.8 0.1 1.9e-39 134.2 0.1 1.3 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|336251801|ref|YP_004585769.1| - 8.5e-15 54.0 0.0 6.2e-13 48.1 0.0 2.4 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|336251801|ref|YP_004585769.1| - 7.3e-08 31.6 0.0 1.6e-07 30.5 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|336251801|ref|YP_004585769.1| - 5.5e-06 25.9 0.0 1.1e-05 24.9 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|336251801|ref|YP_004585769.1| - 6.6e-06 25.8 0.0 1.7e-05 24.5 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|336251801|ref|YP_004585769.1| - 1.5e-05 24.5 0.0 9.5e-05 21.9 0.0 2.2 3 0 0 3 3 3 1 MarR family MarR PF01047.17 gi|336251801|ref|YP_004585769.1| - 1.5e-05 24.5 0.0 3.7e-05 23.3 0.0 1.6 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|336251801|ref|YP_004585769.1| - 8.3e-05 22.2 0.1 0.00051 19.6 0.0 2.3 2 1 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.14 gi|336251801|ref|YP_004585769.1| - 0.0033 17.3 0.0 0.0065 16.3 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain GAF_2 PF13185.1 gi|336251801|ref|YP_004585769.1| - 0.0069 16.8 0.0 0.012 16.0 0.0 1.5 1 1 0 1 1 1 1 GAF domain HTH_34 PF13601.1 gi|336251801|ref|YP_004585769.1| - 0.0074 16.2 0.0 0.014 15.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|336251801|ref|YP_004585769.1| - 0.0095 15.7 0.0 0.024 14.4 0.0 1.7 2 0 0 2 2 1 1 Winged helix-turn-helix HTH_23 PF13384.1 gi|336251801|ref|YP_004585769.1| - 0.035 13.7 0.0 0.097 12.3 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain DUF742 PF05331.6 gi|336251801|ref|YP_004585769.1| - 0.04 13.5 0.0 0.094 12.3 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF742) HTH_11 PF08279.7 gi|336251801|ref|YP_004585769.1| - 0.041 13.5 0.0 0.12 11.9 0.0 1.8 1 0 0 1 1 1 0 HTH domain HTH_28 PF13518.1 gi|336251801|ref|YP_004585769.1| - 0.062 13.3 0.0 0.37 10.8 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain adh_short_C2 PF13561.1 gi|336251802|ref|YP_004585770.1| - 4.1e-32 111.8 0.1 4.8e-32 111.6 0.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|336251802|ref|YP_004585770.1| - 2.3e-29 102.4 3.5 2.3e-29 102.4 2.4 1.5 1 1 1 2 2 2 1 short chain dehydrogenase KR PF08659.5 gi|336251802|ref|YP_004585770.1| - 1.4e-11 44.3 4.5 4.8e-09 36.1 0.5 2.1 1 1 1 2 2 2 2 KR domain Epimerase PF01370.16 gi|336251802|ref|YP_004585770.1| - 1.4e-06 27.8 0.3 6.1e-06 25.8 0.2 1.8 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family THF_DHG_CYH_C PF02882.14 gi|336251802|ref|YP_004585770.1| - 0.0093 15.0 0.0 0.017 14.2 0.0 1.4 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain F420_oxidored PF03807.12 gi|336251802|ref|YP_004585770.1| - 0.011 16.1 0.6 0.047 14.1 0.0 2.2 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent NmrA PF05368.8 gi|336251802|ref|YP_004585770.1| - 0.018 14.2 0.2 0.033 13.4 0.1 1.5 1 0 0 1 1 1 0 NmrA-like family ACT_7 PF13840.1 gi|336251802|ref|YP_004585770.1| - 0.025 14.1 0.1 0.48 9.9 0.0 2.4 2 0 0 2 2 2 0 ACT domain 3HCDH_N PF02737.13 gi|336251802|ref|YP_004585770.1| - 0.025 14.2 0.6 0.15 11.7 0.1 2.2 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|336251802|ref|YP_004585770.1| - 0.16 12.0 1.6 1.7 8.6 0.1 2.3 2 0 0 2 2 2 0 TrkA-N domain LytR_C PF13399.1 gi|336251802|ref|YP_004585770.1| - 0.51 10.7 4.3 0.63 10.4 0.1 2.8 3 0 0 3 3 3 0 LytR cell envelope-related transcriptional attenuator GFO_IDH_MocA PF01408.17 gi|336251803|ref|YP_004585771.1| - 2.3e-17 63.6 1.6 7.1e-17 62.0 1.1 1.8 1 1 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|336251803|ref|YP_004585771.1| - 0.082 12.7 0.0 0.28 10.9 0.0 1.9 2 0 0 2 2 2 0 Oxidoreductase family, C-terminal alpha/beta domain MR_MLE_C PF13378.1 gi|336251804|ref|YP_004585772.1| - 2.1e-15 56.6 0.2 4.6e-15 55.5 0.2 1.6 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE PF01188.16 gi|336251804|ref|YP_004585772.1| - 7.5e-13 48.8 0.1 2.3e-12 47.2 0.0 1.9 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MR_MLE_N PF02746.11 gi|336251804|ref|YP_004585772.1| - 1.5e-09 37.8 0.0 2.9e-09 36.9 0.0 1.4 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Glyco_hydro_81 PF03639.8 gi|336251805|ref|YP_004585773.1| - 4.6e-41 140.6 9.4 3.7e-40 137.6 6.3 2.1 2 0 0 2 2 2 2 Glycosyl hydrolase family 81 Regulator_TrmB PF11495.3 gi|336251806|ref|YP_004585774.1| - 1.9e-47 161.1 0.0 2.4e-47 160.8 0.0 1.1 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.14 gi|336251806|ref|YP_004585774.1| - 5.3e-14 51.6 0.0 1.1e-13 50.6 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_7 PF02796.10 gi|336251806|ref|YP_004585774.1| - 0.0036 17.1 0.0 0.007 16.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase HTH_IclR PF09339.5 gi|336251806|ref|YP_004585774.1| - 0.0043 16.6 0.0 0.0092 15.5 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_28 PF13518.1 gi|336251806|ref|YP_004585774.1| - 0.012 15.5 0.0 0.025 14.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_20 PF12840.2 gi|336251806|ref|YP_004585774.1| - 0.027 14.2 0.0 0.11 12.2 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain PadR PF03551.9 gi|336251806|ref|YP_004585774.1| - 0.039 13.7 0.0 0.18 11.5 0.0 2.0 2 0 0 2 2 2 0 Transcriptional regulator PadR-like family MarR_2 PF12802.2 gi|336251806|ref|YP_004585774.1| - 0.076 12.7 0.1 0.36 10.5 0.0 2.2 2 0 0 2 2 2 0 MarR family FaeA PF04703.7 gi|336251806|ref|YP_004585774.1| - 0.11 12.7 0.2 0.52 10.4 0.1 2.1 1 1 1 2 2 2 0 FaeA-like protein CENP-B_N PF04218.8 gi|336251806|ref|YP_004585774.1| - 0.14 11.6 0.0 0.27 10.6 0.0 1.5 1 0 0 1 1 1 0 CENP-B N-terminal DNA-binding domain YqjK PF13997.1 gi|336251807|ref|YP_004585775.1| - 0.066 13.3 0.7 0.12 12.5 0.2 1.7 1 1 1 2 2 2 0 YqjK-like protein Tmem26 PF09772.4 gi|336251807|ref|YP_004585775.1| - 0.11 11.7 0.3 0.11 11.6 0.2 1.1 1 0 0 1 1 1 0 Transmembrane protein 26 CoA_binding_3 PF13727.1 gi|336251807|ref|YP_004585775.1| - 0.14 11.9 2.3 0.16 11.7 1.6 1.0 1 0 0 1 1 1 0 CoA-binding domain DUF202 PF02656.10 gi|336251807|ref|YP_004585775.1| - 0.24 11.6 1.7 0.33 11.2 1.2 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF202) ABC_tran PF00005.22 gi|336251808|ref|YP_004585776.1| - 1.3e-28 100.0 0.0 1.7e-28 99.6 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|336251808|ref|YP_004585776.1| - 1.4e-14 54.2 1.1 3.2e-14 53.0 0.4 1.9 2 0 0 2 2 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|336251808|ref|YP_004585776.1| - 1.7e-10 41.3 0.1 2.6e-05 24.3 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|336251808|ref|YP_004585776.1| - 0.0007 18.8 0.1 0.4 9.8 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|336251808|ref|YP_004585776.1| - 0.00097 18.6 0.0 0.0017 17.8 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|336251808|ref|YP_004585776.1| - 0.001 19.2 2.6 0.023 14.8 1.8 2.2 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|336251808|ref|YP_004585776.1| - 0.0054 17.0 0.0 0.0092 16.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|336251808|ref|YP_004585776.1| - 0.0065 16.4 0.0 0.0097 15.9 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.1 gi|336251808|ref|YP_004585776.1| - 0.0099 16.6 0.0 0.028 15.2 0.0 1.9 2 0 0 2 2 1 1 AAA domain NB-ARC PF00931.17 gi|336251808|ref|YP_004585776.1| - 0.012 14.5 0.1 0.019 13.8 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain KaiC PF06745.8 gi|336251808|ref|YP_004585776.1| - 0.015 14.4 0.0 0.028 13.5 0.0 1.3 1 0 0 1 1 1 0 KaiC AAA_10 PF12846.2 gi|336251808|ref|YP_004585776.1| - 0.02 14.3 0.0 0.088 12.2 0.0 2.0 1 1 1 2 2 2 0 AAA-like domain AAA_18 PF13238.1 gi|336251808|ref|YP_004585776.1| - 0.035 14.4 0.1 0.075 13.3 0.1 1.6 1 0 0 1 1 1 0 AAA domain MobB PF03205.9 gi|336251808|ref|YP_004585776.1| - 0.055 13.1 0.3 0.09 12.4 0.2 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_25 PF13481.1 gi|336251808|ref|YP_004585776.1| - 0.062 12.6 0.0 0.13 11.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|336251808|ref|YP_004585776.1| - 0.087 12.4 0.6 0.16 11.6 0.1 1.6 2 0 0 2 2 1 0 NACHT domain DUF258 PF03193.11 gi|336251808|ref|YP_004585776.1| - 0.12 11.5 0.6 0.3 10.2 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function, DUF258 FtsK_SpoIIIE PF01580.13 gi|336251808|ref|YP_004585776.1| - 0.12 11.8 0.0 0.21 11.0 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family Miro PF08477.8 gi|336251808|ref|YP_004585776.1| - 0.13 12.7 0.0 0.22 12.0 0.0 1.4 1 0 0 1 1 1 0 Miro-like protein AAA_33 PF13671.1 gi|336251808|ref|YP_004585776.1| - 0.14 12.0 0.0 0.22 11.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain PhoH PF02562.11 gi|336251808|ref|YP_004585776.1| - 0.16 11.1 0.0 0.26 10.5 0.0 1.3 1 0 0 1 1 1 0 PhoH-like protein AAA_24 PF13479.1 gi|336251808|ref|YP_004585776.1| - 0.2 11.2 0.0 0.42 10.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|336251809|ref|YP_004585777.1| - 2.3e-22 79.7 0.0 3.2e-22 79.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|336251809|ref|YP_004585777.1| - 2.5e-19 69.3 0.7 5.4e-19 68.3 0.5 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|336251809|ref|YP_004585777.1| - 2.2e-10 41.0 0.6 9.2e-09 35.6 0.4 2.1 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|336251809|ref|YP_004585777.1| - 7.2e-05 22.2 0.0 0.0049 16.2 0.0 2.5 2 1 0 2 2 2 1 AAA domain SMC_N PF02463.14 gi|336251809|ref|YP_004585777.1| - 0.00015 21.0 0.3 0.044 13.0 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain ABC_ATPase PF09818.4 gi|336251809|ref|YP_004585777.1| - 0.00036 19.2 0.0 0.0058 15.2 0.0 2.2 2 1 0 2 2 2 1 Predicted ATPase of the ABC class AAA_22 PF13401.1 gi|336251809|ref|YP_004585777.1| - 0.00086 19.4 0.5 0.019 15.0 0.3 2.2 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|336251809|ref|YP_004585777.1| - 0.0055 16.1 0.1 0.027 13.8 0.0 1.9 1 1 1 2 2 2 1 AAA-like domain ArgK PF03308.11 gi|336251809|ref|YP_004585777.1| - 0.0084 14.9 0.0 0.012 14.4 0.0 1.1 1 0 0 1 1 1 1 ArgK protein AAA_16 PF13191.1 gi|336251809|ref|YP_004585777.1| - 0.011 15.7 0.1 0.018 15.0 0.1 1.5 1 1 0 1 1 1 0 AAA ATPase domain T2SE PF00437.15 gi|336251809|ref|YP_004585777.1| - 0.011 14.6 0.0 0.019 13.8 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein DUF87 PF01935.12 gi|336251809|ref|YP_004585777.1| - 0.014 15.2 0.1 0.025 14.4 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function DUF87 AAA_17 PF13207.1 gi|336251809|ref|YP_004585777.1| - 0.028 15.2 0.1 0.072 13.9 0.0 1.9 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.12 gi|336251809|ref|YP_004585777.1| - 0.032 13.6 0.1 0.13 11.6 0.0 1.9 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_29 PF13555.1 gi|336251809|ref|YP_004585777.1| - 0.038 13.5 0.0 0.077 12.5 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain PRK PF00485.13 gi|336251809|ref|YP_004585777.1| - 0.046 13.2 0.0 0.065 12.7 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family NACHT PF05729.7 gi|336251809|ref|YP_004585777.1| - 0.065 12.8 0.0 0.13 11.9 0.0 1.5 1 0 0 1 1 1 0 NACHT domain FtsK_SpoIIIE PF01580.13 gi|336251809|ref|YP_004585777.1| - 0.072 12.5 0.0 0.15 11.5 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family Dynamin_N PF00350.18 gi|336251809|ref|YP_004585777.1| - 0.086 12.6 0.0 0.14 11.9 0.0 1.4 1 0 0 1 1 1 0 Dynamin family AAA_15 PF13175.1 gi|336251809|ref|YP_004585777.1| - 0.14 11.1 0.0 0.75 8.7 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain AAA_23 PF13476.1 gi|336251809|ref|YP_004585777.1| - 0.2 11.9 0.0 0.29 11.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.17 gi|336251810|ref|YP_004585778.1| - 8e-23 80.9 12.5 8e-23 80.9 8.7 1.6 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Transmemb_17 PF09799.4 gi|336251810|ref|YP_004585778.1| - 0.02 15.1 0.8 0.063 13.6 0.6 1.8 1 0 0 1 1 1 0 Predicted membrane protein OppC_N PF12911.2 gi|336251810|ref|YP_004585778.1| - 0.061 12.7 0.1 0.26 10.6 0.0 2.1 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.17 gi|336251811|ref|YP_004585779.1| - 6.1e-36 123.6 9.7 6.1e-36 123.6 6.7 1.9 3 0 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component UPF0242 PF06785.6 gi|336251811|ref|YP_004585779.1| - 0.073 11.7 0.0 0.1 11.2 0.0 1.1 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) SBP_bac_5 PF00496.17 gi|336251812|ref|YP_004585780.1| - 4.3e-48 164.0 8.6 5.7e-48 163.6 6.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.4 gi|336251812|ref|YP_004585780.1| - 0.045 13.7 2.5 0.084 12.9 1.7 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Glyco_hydro_3 PF00933.16 gi|336251813|ref|YP_004585781.1| - 6.1e-82 274.9 0.0 7.9e-82 274.5 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain Glyco_hydro_3_C PF01915.17 gi|336251813|ref|YP_004585781.1| - 1.9e-58 197.6 0.0 3.1e-58 196.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 C-terminal domain Fn3-like PF14310.1 gi|336251813|ref|YP_004585781.1| - 1.3e-14 53.8 0.1 1.1e-13 50.8 0.0 2.2 2 0 0 2 2 2 1 Fibronectin type III-like domain CARDB PF07705.6 gi|336251813|ref|YP_004585781.1| - 0.039 14.0 0.0 0.079 13.0 0.0 1.4 1 0 0 1 1 1 0 CARDB GFO_IDH_MocA PF01408.17 gi|336251815|ref|YP_004585783.1| - 3.5e-24 85.6 0.0 6.2e-24 84.8 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|336251815|ref|YP_004585783.1| - 1.9e-08 34.1 0.4 3.6e-08 33.1 0.3 1.5 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain NAD_binding_2 PF03446.10 gi|336251815|ref|YP_004585783.1| - 0.0059 16.4 0.0 0.011 15.6 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Semialdhyde_dh PF01118.19 gi|336251815|ref|YP_004585783.1| - 0.012 15.8 0.0 0.025 14.8 0.0 1.5 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|336251815|ref|YP_004585783.1| - 0.062 13.2 0.4 0.52 10.2 0.1 2.3 2 1 0 2 2 2 0 Dihydrodipicolinate reductase, N-terminus Glyco_hydro_3 PF00933.16 gi|336251816|ref|YP_004585784.1| - 3e-76 256.2 0.0 4.3e-76 255.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain Glyco_hydro_3_C PF01915.17 gi|336251816|ref|YP_004585784.1| - 4.7e-54 183.3 0.1 7.9e-54 182.5 0.1 1.4 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 C-terminal domain Fn3-like PF14310.1 gi|336251816|ref|YP_004585784.1| - 4.9e-19 68.0 0.1 9.3e-19 67.1 0.0 1.5 1 0 0 1 1 1 1 Fibronectin type III-like domain Beta_helix PF13229.1 gi|336251817|ref|YP_004585785.1| - 7.7e-05 22.4 0.0 0.013 15.2 0.1 2.5 1 1 1 2 2 2 2 Right handed beta helix region Pec_lyase_C PF00544.14 gi|336251817|ref|YP_004585785.1| - 0.032 13.6 0.0 0.051 13.0 0.0 1.3 1 0 0 1 1 1 0 Pectate lyase BPD_transp_1 PF00528.17 gi|336251819|ref|YP_004585787.1| - 5.7e-31 107.4 13.2 5.7e-31 107.4 9.1 1.7 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Renin_r PF07850.9 gi|336251819|ref|YP_004585787.1| - 0.0087 16.3 0.2 0.035 14.4 0.1 2.0 2 0 0 2 2 2 1 Renin receptor-like protein DUF2956 PF11169.3 gi|336251819|ref|YP_004585787.1| - 0.042 13.7 0.5 0.091 12.7 0.4 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2956) FtsX PF02687.16 gi|336251819|ref|YP_004585787.1| - 0.9 9.3 24.2 1.3 8.7 2.3 3.4 1 1 1 3 3 3 0 FtsX-like permease family MgtE PF01769.11 gi|336251819|ref|YP_004585787.1| - 2.8 8.2 7.5 0.25 11.6 0.2 2.7 2 1 0 2 2 2 0 Divalent cation transporter BPD_transp_1 PF00528.17 gi|336251820|ref|YP_004585788.1| - 7.9e-24 84.1 10.5 7.9e-24 84.1 7.3 1.7 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|336251820|ref|YP_004585788.1| - 0.025 13.9 0.0 0.073 12.4 0.0 1.8 1 0 0 1 1 1 0 N-terminal TM domain of oligopeptide transport permease C ABC_tran PF00005.22 gi|336251821|ref|YP_004585789.1| - 9.9e-53 178.1 0.0 3.5e-29 101.8 0.0 2.2 2 0 0 2 2 2 2 ABC transporter oligo_HPY PF08352.7 gi|336251821|ref|YP_004585789.1| - 2.1e-34 117.6 7.5 7.4e-17 61.4 0.2 2.5 2 0 0 2 2 2 2 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|336251821|ref|YP_004585789.1| - 8.2e-22 78.5 4.9 1.8e-09 37.9 0.2 4.2 2 2 1 4 4 4 3 AAA domain AAA_22 PF13401.1 gi|336251821|ref|YP_004585789.1| - 5.2e-08 33.1 0.3 0.01 15.9 0.0 3.5 3 1 0 3 3 3 2 AAA domain SMC_N PF02463.14 gi|336251821|ref|YP_004585789.1| - 1.6e-07 30.7 0.1 0.062 12.5 0.0 3.6 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_25 PF13481.1 gi|336251821|ref|YP_004585789.1| - 1.9e-07 30.6 0.0 0.009 15.4 0.0 3.3 3 0 0 3 3 3 2 AAA domain AAA_29 PF13555.1 gi|336251821|ref|YP_004585789.1| - 9.5e-07 28.2 0.1 0.019 14.4 0.0 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|336251821|ref|YP_004585789.1| - 2.8e-06 27.4 0.9 0.066 13.1 0.0 2.9 3 1 0 3 3 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|336251821|ref|YP_004585789.1| - 4.8e-06 27.0 0.0 0.077 13.3 0.0 2.3 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.12 gi|336251821|ref|YP_004585789.1| - 2e-05 24.0 0.1 0.18 11.1 0.0 2.7 3 0 0 3 3 3 2 IstB-like ATP binding protein DUF258 PF03193.11 gi|336251821|ref|YP_004585789.1| - 2.2e-05 23.6 0.0 0.061 12.5 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA_15 PF13175.1 gi|336251821|ref|YP_004585789.1| - 2.8e-05 23.3 0.4 0.067 12.2 0.1 3.4 4 0 0 4 4 4 1 AAA ATPase domain NACHT PF05729.7 gi|336251821|ref|YP_004585789.1| - 3.2e-05 23.6 1.6 0.14 11.7 0.0 2.4 2 0 0 2 2 2 2 NACHT domain AAA_10 PF12846.2 gi|336251821|ref|YP_004585789.1| - 4.6e-05 23.0 0.0 0.15 11.4 0.0 2.5 2 0 0 2 2 2 2 AAA-like domain PhoH PF02562.11 gi|336251821|ref|YP_004585789.1| - 8.5e-05 21.8 0.0 0.32 10.2 0.0 2.3 2 0 0 2 2 2 2 PhoH-like protein NB-ARC PF00931.17 gi|336251821|ref|YP_004585789.1| - 9.8e-05 21.3 0.0 0.097 11.5 0.0 2.3 2 0 0 2 2 2 2 NB-ARC domain AAA_17 PF13207.1 gi|336251821|ref|YP_004585789.1| - 0.00026 21.8 1.1 0.32 11.8 0.0 3.1 2 0 0 2 2 2 1 AAA domain RNA_helicase PF00910.17 gi|336251821|ref|YP_004585789.1| - 0.00027 21.0 0.0 1.2 9.2 0.0 2.5 2 0 0 2 2 2 2 RNA helicase KaiC PF06745.8 gi|336251821|ref|YP_004585789.1| - 0.00062 18.9 0.1 0.4 9.7 0.1 2.6 2 0 0 2 2 2 1 KaiC AAA_33 PF13671.1 gi|336251821|ref|YP_004585789.1| - 0.00083 19.2 0.1 0.33 10.8 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.1 gi|336251821|ref|YP_004585789.1| - 0.00092 19.5 0.0 1.9 8.8 0.0 3.0 2 0 0 2 2 2 1 AAA domain Zeta_toxin PF06414.7 gi|336251821|ref|YP_004585789.1| - 0.001 18.1 0.0 1.1 8.2 0.0 2.7 3 0 0 3 3 3 2 Zeta toxin ABC_ATPase PF09818.4 gi|336251821|ref|YP_004585789.1| - 0.0038 15.8 0.3 0.3 9.6 0.0 3.0 4 0 0 4 4 4 1 Predicted ATPase of the ABC class AAA_24 PF13479.1 gi|336251821|ref|YP_004585789.1| - 0.0046 16.5 0.0 0.4 10.2 0.0 2.8 3 0 0 3 3 3 1 AAA domain MobB PF03205.9 gi|336251821|ref|YP_004585789.1| - 0.0047 16.6 0.2 2.5 7.8 0.0 2.5 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA PF00004.24 gi|336251821|ref|YP_004585789.1| - 0.0047 17.1 0.1 1.7 8.8 0.0 2.9 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.16 gi|336251821|ref|YP_004585789.1| - 0.0059 15.7 0.0 0.98 8.5 0.0 2.5 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI UPF0079 PF02367.12 gi|336251821|ref|YP_004585789.1| - 0.0064 16.1 0.2 0.34 10.5 0.0 2.3 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 Sigma54_activat PF00158.21 gi|336251821|ref|YP_004585789.1| - 0.0071 15.8 0.0 1.5 8.2 0.0 2.4 2 0 0 2 2 2 1 Sigma-54 interaction domain Miro PF08477.8 gi|336251821|ref|YP_004585789.1| - 0.011 16.1 0.0 2.2 8.7 0.0 2.5 2 0 0 2 2 2 0 Miro-like protein AAA_5 PF07728.9 gi|336251821|ref|YP_004585789.1| - 0.012 15.2 5.5 1.6 8.4 0.2 3.3 4 0 0 4 4 3 0 AAA domain (dynein-related subfamily) FtsK_SpoIIIE PF01580.13 gi|336251821|ref|YP_004585789.1| - 0.015 14.7 0.0 0.57 9.6 0.0 2.2 2 0 0 2 2 2 0 FtsK/SpoIIIE family DUF87 PF01935.12 gi|336251821|ref|YP_004585789.1| - 0.02 14.6 0.0 0.07 12.9 0.0 1.9 1 0 0 1 1 1 0 Domain of unknown function DUF87 Sigma54_activ_2 PF14532.1 gi|336251821|ref|YP_004585789.1| - 0.027 14.5 0.5 15 5.5 0.0 3.1 3 0 0 3 3 3 0 Sigma-54 interaction domain MMR_HSR1 PF01926.18 gi|336251821|ref|YP_004585789.1| - 0.029 14.3 0.3 2.8 7.9 0.0 2.7 3 0 0 3 3 2 0 50S ribosome-binding GTPase AAA_30 PF13604.1 gi|336251821|ref|YP_004585789.1| - 0.036 13.6 0.0 7.6 6.0 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|336251821|ref|YP_004585789.1| - 0.039 13.7 0.2 4 7.2 0.1 2.6 2 0 0 2 2 2 0 Part of AAA domain Arch_ATPase PF01637.13 gi|336251821|ref|YP_004585789.1| - 0.069 12.8 0.0 2.2 7.8 0.0 2.5 3 0 0 3 3 2 0 Archaeal ATPase PduV-EutP PF10662.4 gi|336251821|ref|YP_004585789.1| - 0.074 12.5 0.3 0.5 9.8 0.1 2.1 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation T2SE PF00437.15 gi|336251821|ref|YP_004585789.1| - 0.081 11.8 0.0 8.6 5.1 0.0 2.3 2 0 0 2 2 2 0 Type II/IV secretion system protein AAA_14 PF13173.1 gi|336251821|ref|YP_004585789.1| - 0.17 11.8 0.0 6.6 6.6 0.0 2.4 2 0 0 2 2 2 0 AAA domain Citrate_synt PF00285.16 gi|336251821|ref|YP_004585789.1| - 0.18 10.4 0.0 0.25 10.0 0.0 1.2 1 0 0 1 1 1 0 Citrate synthase NTPase_1 PF03266.10 gi|336251821|ref|YP_004585789.1| - 0.31 10.7 0.8 16 5.1 0.1 3.3 4 0 0 4 4 4 0 NTPase SbcCD_C PF13558.1 gi|336251821|ref|YP_004585789.1| - 0.33 10.9 1.8 45 4.0 0.1 3.4 2 2 0 2 2 2 0 Putative exonuclease SbcCD, C subunit PRK PF00485.13 gi|336251821|ref|YP_004585789.1| - 0.42 10.1 1.9 18 4.8 0.3 2.3 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family Hpr_kinase_C PF07475.7 gi|336251821|ref|YP_004585789.1| - 0.52 9.6 1.8 19 4.5 0.2 2.3 2 0 0 2 2 2 0 HPr Serine kinase C-terminal domain SBP_bac_5 PF00496.17 gi|336251822|ref|YP_004585790.1| - 2.8e-35 121.8 0.1 5.4e-35 120.9 0.1 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.4 gi|336251822|ref|YP_004585790.1| - 0.034 14.1 1.2 0.034 14.1 0.9 1.6 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence EPSP_synthase PF00275.15 gi|336251822|ref|YP_004585790.1| - 0.12 10.7 0.0 0.17 10.2 0.0 1.1 1 0 0 1 1 1 0 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) adh_short_C2 PF13561.1 gi|336251823|ref|YP_004585791.1| - 2.4e-32 112.6 0.0 3e-32 112.2 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|336251823|ref|YP_004585791.1| - 5.6e-32 110.9 7.3 9.9e-32 110.1 5.0 1.4 2 0 0 2 2 2 1 short chain dehydrogenase KR PF08659.5 gi|336251823|ref|YP_004585791.1| - 8e-12 45.1 2.4 1.2e-11 44.6 1.6 1.3 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|336251823|ref|YP_004585791.1| - 0.0082 15.5 0.6 0.012 15.0 0.4 1.4 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|336251823|ref|YP_004585791.1| - 0.095 11.3 0.1 0.1 11.2 0.1 1.1 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family 3HCDH_N PF02737.13 gi|336251823|ref|YP_004585791.1| - 0.21 11.2 2.7 0.4 10.3 1.9 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Eno-Rase_NADH_b PF12242.3 gi|336251823|ref|YP_004585791.1| - 0.24 11.2 1.3 0.57 10.0 0.9 1.6 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase Cytochrom_B_N PF00033.14 gi|336251824|ref|YP_004585792.1| - 0.067 12.5 4.6 0.12 11.7 3.2 1.5 1 1 0 1 1 1 0 Cytochrome b(N-terminal)/b6/petB DUF3040 PF11239.3 gi|336251824|ref|YP_004585792.1| - 0.074 13.1 3.7 0.089 12.8 2.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) COX14 PF14880.1 gi|336251824|ref|YP_004585792.1| - 0.076 12.6 0.5 0.076 12.6 0.3 1.9 2 1 1 3 3 3 0 Cytochrome oxidase c assembly DUF2892 PF11127.3 gi|336251824|ref|YP_004585792.1| - 0.28 11.0 11.2 0.36 10.6 7.8 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2892) FA_desaturase PF00487.19 gi|336251824|ref|YP_004585792.1| - 0.56 9.6 5.8 0.57 9.5 4.0 1.0 1 0 0 1 1 1 0 Fatty acid desaturase DUF1469 PF07332.6 gi|336251824|ref|YP_004585792.1| - 0.76 9.5 11.8 0.91 9.2 8.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) DUF872 PF05915.7 gi|336251824|ref|YP_004585792.1| - 1.3 8.8 5.8 2.1 8.2 4.0 1.5 1 1 0 1 1 1 0 Eukaryotic protein of unknown function (DUF872) Neurensin PF14927.1 gi|336251824|ref|YP_004585792.1| - 6.3 6.1 9.3 0.8 9.0 2.6 1.9 1 1 1 2 2 2 0 Neurensin Epimerase PF01370.16 gi|336251825|ref|YP_004585793.1| - 1.6e-20 73.5 0.1 6.6e-20 71.5 0.1 1.8 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|336251825|ref|YP_004585793.1| - 3.3e-14 52.2 0.0 4.6e-14 51.7 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|336251825|ref|YP_004585793.1| - 4.1e-11 42.3 0.0 1.3e-09 37.4 0.0 2.5 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.1 gi|336251825|ref|YP_004585793.1| - 3.6e-09 36.8 0.0 5.8e-09 36.2 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding NAD_binding_4 PF07993.7 gi|336251825|ref|YP_004585793.1| - 6e-09 35.1 0.0 9.4e-09 34.5 0.0 1.3 1 0 0 1 1 1 1 Male sterility protein RmlD_sub_bind PF04321.12 gi|336251825|ref|YP_004585793.1| - 1e-08 34.4 0.0 2.4e-08 33.2 0.0 1.6 2 0 0 2 2 2 1 RmlD substrate binding domain adh_short PF00106.20 gi|336251825|ref|YP_004585793.1| - 0.00068 19.5 0.0 0.02 14.7 0.0 2.4 2 1 0 2 2 2 1 short chain dehydrogenase KR PF08659.5 gi|336251825|ref|YP_004585793.1| - 0.024 14.3 0.0 0.91 9.1 0.0 2.2 1 1 0 1 1 1 0 KR domain MR_MLE_C PF13378.1 gi|336251826|ref|YP_004585794.1| - 9e-26 90.0 0.0 1.9e-25 88.9 0.0 1.6 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE PF01188.16 gi|336251826|ref|YP_004585794.1| - 1.3e-17 64.0 1.2 1.3e-16 60.9 0.0 2.7 3 0 0 3 3 3 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MR_MLE_N PF02746.11 gi|336251826|ref|YP_004585794.1| - 1.1e-14 54.4 0.0 2.9e-14 53.0 0.0 1.7 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Lipase_GDSL_2 PF13472.1 gi|336251827|ref|YP_004585795.1| - 5.7e-22 78.7 0.0 6.7e-22 78.4 0.0 1.1 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family Lipase_GDSL PF00657.17 gi|336251827|ref|YP_004585795.1| - 3.3e-13 49.9 0.0 3.9e-13 49.7 0.0 1.1 1 0 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase DHDPS PF00701.17 gi|336251828|ref|YP_004585796.1| - 9.8e-44 149.0 0.0 1.2e-43 148.7 0.0 1.1 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family ThuA PF06283.6 gi|336251829|ref|YP_004585797.1| - 2.2e-48 164.8 0.1 2.5e-48 164.6 0.1 1.0 1 0 0 1 1 1 1 Trehalose utilisation Pec_lyase_C PF00544.14 gi|336251830|ref|YP_004585798.1| - 2.9e-06 26.8 0.1 5.5e-06 25.9 0.1 1.5 1 0 0 1 1 1 1 Pectate lyase DUF1349 PF07081.6 gi|336251830|ref|YP_004585798.1| - 5.1e-06 25.9 0.0 0.1 11.9 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF1349) DUF1583 PF07622.6 gi|336251830|ref|YP_004585798.1| - 0.0029 16.1 0.1 0.0045 15.4 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1583) MR_MLE_C PF13378.1 gi|336251831|ref|YP_004585799.1| - 3.9e-35 120.1 0.2 1.5e-34 118.2 0.0 2.0 2 1 0 2 2 2 1 Enolase C-terminal domain-like MR_MLE_N PF02746.11 gi|336251831|ref|YP_004585799.1| - 1.3e-20 73.5 0.0 3.5e-20 72.1 0.0 1.7 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MR_MLE PF01188.16 gi|336251831|ref|YP_004585799.1| - 2.2e-17 63.3 1.0 6.1e-17 61.9 0.7 1.8 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Bac_luciferase PF00296.15 gi|336251832|ref|YP_004585800.1| - 6.4e-54 183.1 0.0 8.3e-54 182.7 0.0 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase Abhydrolase_7 PF12715.2 gi|336251833|ref|YP_004585801.1| - 3.2e-19 69.1 0.0 7.7e-19 67.8 0.0 1.5 1 1 0 1 1 1 1 Abhydrolase family Abhydrolase_5 PF12695.2 gi|336251833|ref|YP_004585801.1| - 1.8e-13 50.4 0.1 2.9e-13 49.7 0.1 1.4 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|336251833|ref|YP_004585801.1| - 1.9e-09 37.7 8.0 2.7e-08 33.9 1.8 2.5 2 1 0 3 3 3 2 Alpha/beta hydrolase family AXE1 PF05448.7 gi|336251833|ref|YP_004585801.1| - 5.4e-06 25.1 0.0 1.4e-05 23.8 0.0 1.6 2 0 0 2 2 2 1 Acetyl xylan esterase (AXE1) Peptidase_S9 PF00326.16 gi|336251833|ref|YP_004585801.1| - 5.3e-05 22.5 0.0 0.007 15.6 0.0 2.3 2 0 0 2 2 2 1 Prolyl oligopeptidase family DLH PF01738.13 gi|336251833|ref|YP_004585801.1| - 6e-05 22.4 0.3 0.00022 20.5 0.2 1.8 1 1 0 1 1 1 1 Dienelactone hydrolase family Esterase_phd PF10503.4 gi|336251833|ref|YP_004585801.1| - 0.0055 15.9 0.5 0.0055 15.9 0.3 1.6 2 0 0 2 2 2 1 Esterase PHB depolymerase LIP PF03583.9 gi|336251833|ref|YP_004585801.1| - 0.029 13.5 0.1 0.1 11.7 0.0 1.8 2 0 0 2 2 2 0 Secretory lipase BAAT_C PF08840.6 gi|336251833|ref|YP_004585801.1| - 0.059 13.0 0.0 0.09 12.4 0.0 1.2 1 0 0 1 1 1 0 BAAT / Acyl-CoA thioester hydrolase C terminal Esterase PF00756.15 gi|336251833|ref|YP_004585801.1| - 0.072 12.5 0.1 1.7 8.0 0.0 2.6 3 0 0 3 3 3 0 Putative esterase Lipase_3 PF01764.20 gi|336251833|ref|YP_004585801.1| - 0.077 12.6 0.0 0.15 11.6 0.0 1.5 1 0 0 1 1 1 0 Lipase (class 3) DHDPS PF00701.17 gi|336251834|ref|YP_004585802.1| - 2.5e-39 134.6 0.0 3e-39 134.3 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family Bac_export_1 PF01311.15 gi|336251835|ref|YP_004585803.1| - 0.037 13.2 0.0 0.044 13.0 0.0 1.1 1 0 0 1 1 1 0 Bacterial export proteins, family 1 MtrE PF04206.7 gi|336251835|ref|YP_004585803.1| - 0.053 12.5 0.1 0.06 12.3 0.1 1.0 1 0 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase, subunit E DUF1673 PF07895.6 gi|336251835|ref|YP_004585803.1| - 0.079 12.4 0.2 0.097 12.1 0.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1673) SPC12 PF06645.8 gi|336251835|ref|YP_004585803.1| - 0.2 11.4 1.5 0.25 11.1 1.0 1.2 1 0 0 1 1 1 0 Microsomal signal peptidase 12 kDa subunit (SPC12) TPP_enzyme_N PF02776.13 gi|336251836|ref|YP_004585804.1| - 1e-39 135.7 0.0 8.1e-34 116.5 0.0 2.3 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|336251836|ref|YP_004585804.1| - 3.3e-38 130.6 0.0 6.4e-38 129.7 0.0 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|336251836|ref|YP_004585804.1| - 1.5e-31 108.9 0.0 3.3e-31 107.8 0.0 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain Glyco_hydro_28 PF00295.12 gi|336251837|ref|YP_004585805.1| - 1.8e-49 168.5 1.6 8e-47 159.7 1.1 2.5 1 1 0 1 1 1 1 Glycosyl hydrolases family 28 Pectate_lyase_3 PF12708.2 gi|336251837|ref|YP_004585805.1| - 1.9e-17 64.1 2.4 4.9e-15 56.2 1.6 3.2 1 1 0 2 2 2 1 Pectate lyase superfamily protein Beta_helix PF13229.1 gi|336251837|ref|YP_004585805.1| - 7.4e-10 38.7 6.5 3.4e-07 30.1 5.7 3.0 1 1 2 3 3 3 2 Right handed beta helix region NosD PF05048.8 gi|336251837|ref|YP_004585805.1| - 0.00039 19.6 1.9 0.00039 19.6 1.3 2.4 2 1 0 2 2 2 1 Periplasmic copper-binding protein (NosD) Pentapeptide_4 PF13599.1 gi|336251837|ref|YP_004585805.1| - 0.053 13.3 0.2 26 4.7 0.0 3.7 3 1 0 3 3 3 0 Pentapeptide repeats (9 copies) GFO_IDH_MocA PF01408.17 gi|336251838|ref|YP_004585806.1| - 5.5e-27 94.6 0.1 1e-26 93.7 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|336251838|ref|YP_004585806.1| - 1e-12 47.8 0.1 1.9e-12 46.9 0.1 1.5 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain Semialdhyde_dh PF01118.19 gi|336251838|ref|YP_004585806.1| - 0.0005 20.3 0.2 0.00097 19.4 0.1 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain ox_reductase_C PF08635.5 gi|336251838|ref|YP_004585806.1| - 0.013 14.9 0.1 0.036 13.4 0.0 1.6 1 1 0 1 1 1 0 Putative oxidoreductase C terminal F420_oxidored PF03807.12 gi|336251838|ref|YP_004585806.1| - 0.11 12.8 0.2 0.42 11.0 0.1 2.0 2 0 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent DUF296 PF03479.10 gi|336251839|ref|YP_004585807.1| - 1.9e-15 56.5 0.0 2.3e-15 56.2 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF296) F420_oxidored PF03807.12 gi|336251840|ref|YP_004585808.1| - 1.9e-16 60.2 0.0 3.1e-16 59.5 0.0 1.3 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.18 gi|336251840|ref|YP_004585808.1| - 1.8e-06 27.7 0.0 2.3e-06 27.4 0.0 1.2 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Semialdhyde_dh PF01118.19 gi|336251840|ref|YP_004585808.1| - 2.5e-05 24.5 0.0 4.4e-05 23.7 0.0 1.5 1 1 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain ApbA PF02558.11 gi|336251840|ref|YP_004585808.1| - 4.1e-05 23.0 0.0 5.2e-05 22.7 0.0 1.2 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA IlvN PF07991.7 gi|336251840|ref|YP_004585808.1| - 0.00071 18.9 0.0 0.0016 17.8 0.0 1.6 1 1 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain NAD_binding_10 PF13460.1 gi|336251840|ref|YP_004585808.1| - 0.00081 19.4 0.1 0.0014 18.6 0.0 1.5 1 0 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|336251840|ref|YP_004585808.1| - 0.0016 18.3 1.2 0.0024 17.7 0.2 1.7 2 0 0 2 2 2 1 short chain dehydrogenase KR PF08659.5 gi|336251840|ref|YP_004585808.1| - 0.0021 17.7 0.6 0.0043 16.7 0.1 1.6 2 0 0 2 2 2 1 KR domain PDH PF02153.12 gi|336251840|ref|YP_004585808.1| - 0.0023 16.8 0.0 0.0034 16.3 0.0 1.3 1 0 0 1 1 1 1 Prephenate dehydrogenase Pilus_CpaD PF09476.5 gi|336251840|ref|YP_004585808.1| - 0.12 11.8 0.1 0.18 11.2 0.0 1.2 1 0 0 1 1 1 0 Pilus biogenesis CpaD protein (pilus_cpaD) MR_MLE_C PF13378.1 gi|336251841|ref|YP_004585809.1| - 2.6e-16 59.5 0.9 1.3e-15 57.3 0.2 2.5 2 1 0 2 2 2 1 Enolase C-terminal domain-like MR_MLE_N PF02746.11 gi|336251841|ref|YP_004585809.1| - 5.2e-13 49.0 0.0 1e-12 48.1 0.0 1.4 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MR_MLE PF01188.16 gi|336251841|ref|YP_004585809.1| - 9.6e-10 38.8 0.9 3e-09 37.2 0.6 1.9 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain IclR PF01614.13 gi|336251842|ref|YP_004585810.1| - 2.1e-35 121.2 0.0 3.7e-35 120.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|336251842|ref|YP_004585810.1| - 8.5e-11 41.2 0.0 2.1e-10 40.0 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|336251842|ref|YP_004585810.1| - 7.9e-08 31.5 0.0 1.5e-07 30.7 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|336251842|ref|YP_004585810.1| - 6.9e-06 25.6 0.0 1.5e-05 24.5 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|336251842|ref|YP_004585810.1| - 2.6e-05 23.7 0.0 6.5e-05 22.5 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_38 PF13936.1 gi|336251842|ref|YP_004585810.1| - 7.1e-05 22.2 0.0 0.00029 20.3 0.0 2.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_20 PF12840.2 gi|336251842|ref|YP_004585810.1| - 7.6e-05 22.4 0.0 0.00019 21.1 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|336251842|ref|YP_004585810.1| - 0.00057 19.5 0.0 0.0015 18.2 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|336251842|ref|YP_004585810.1| - 0.002 17.7 0.0 0.011 15.3 0.0 2.2 2 0 0 2 2 2 1 HTH domain GAF_2 PF13185.1 gi|336251842|ref|YP_004585810.1| - 0.0038 17.7 0.0 0.0068 16.9 0.0 1.5 1 1 0 1 1 1 1 GAF domain MarR PF01047.17 gi|336251842|ref|YP_004585810.1| - 0.0068 16.0 0.0 0.015 14.9 0.0 1.5 1 0 0 1 1 1 1 MarR family B-block_TFIIIC PF04182.7 gi|336251842|ref|YP_004585810.1| - 0.0069 16.2 0.0 0.013 15.3 0.0 1.4 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_40 PF14493.1 gi|336251842|ref|YP_004585810.1| - 0.008 16.3 0.1 0.029 14.5 0.1 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_34 PF13601.1 gi|336251842|ref|YP_004585810.1| - 0.0088 16.0 0.1 0.021 14.8 0.0 1.6 2 0 0 2 2 1 1 Winged helix DNA-binding domain HTH_AsnC-type PF13404.1 gi|336251842|ref|YP_004585810.1| - 0.015 14.7 0.0 0.036 13.6 0.0 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain RepL PF05732.6 gi|336251842|ref|YP_004585810.1| - 0.02 14.0 0.1 0.054 12.7 0.0 1.6 1 1 1 2 2 2 0 Firmicute plasmid replication protein (RepL) HTH_10 PF04967.7 gi|336251842|ref|YP_004585810.1| - 0.021 14.4 0.1 0.073 12.6 0.0 1.9 2 0 0 2 2 2 0 HTH DNA binding domain GerE PF00196.14 gi|336251842|ref|YP_004585810.1| - 0.023 13.9 0.1 0.042 13.1 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_DeoR PF08220.7 gi|336251842|ref|YP_004585810.1| - 0.026 14.0 0.1 0.06 12.8 0.1 1.6 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_45 PF14947.1 gi|336251842|ref|YP_004585810.1| - 0.049 13.4 0.0 0.11 12.3 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix SpoIIID PF12116.3 gi|336251842|ref|YP_004585810.1| - 0.057 13.3 0.4 0.16 11.9 0.0 2.0 2 1 0 2 2 1 0 Stage III sporulation protein D KorB PF08535.5 gi|336251842|ref|YP_004585810.1| - 0.15 12.2 0.2 0.57 10.3 0.0 2.1 3 1 1 4 4 2 0 KorB domain Bac_luciferase PF00296.15 gi|336251843|ref|YP_004585811.1| - 5.9e-54 183.2 0.0 7e-54 183.0 0.0 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase SBP_bac_1 PF01547.20 gi|336251844|ref|YP_004585812.1| - 1.4e-21 77.5 2.8 4.4e-21 75.9 1.9 1.7 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|336251844|ref|YP_004585812.1| - 2e-20 73.6 0.6 3e-20 73.1 0.4 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.4 gi|336251844|ref|YP_004585812.1| - 0.0042 16.9 1.5 0.013 15.4 1.1 1.9 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.4 gi|336251844|ref|YP_004585812.1| - 0.056 12.6 0.2 0.13 11.4 0.1 1.6 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal BPD_transp_1 PF00528.17 gi|336251845|ref|YP_004585813.1| - 2.9e-19 69.2 17.8 2.9e-19 69.2 12.3 1.7 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Col_cuticle_N PF01484.12 gi|336251845|ref|YP_004585813.1| - 0.24 11.1 0.1 0.24 11.1 0.1 3.8 4 0 0 4 4 4 0 Nematode cuticle collagen N-terminal domain Caveolin PF01146.12 gi|336251845|ref|YP_004585813.1| - 5.6 6.5 12.8 2.4 7.7 0.7 3.2 2 1 1 3 3 3 0 Caveolin BPD_transp_1 PF00528.17 gi|336251846|ref|YP_004585814.1| - 7.4e-15 54.9 17.7 7.4e-15 54.9 12.3 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF1772 PF08592.6 gi|336251846|ref|YP_004585814.1| - 3.7 7.2 9.0 5.1 6.8 1.4 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF1772) VMA21 PF09446.5 gi|336251846|ref|YP_004585814.1| - 5.5 6.9 12.0 1.9 8.5 0.8 3.4 4 0 0 4 4 4 0 VMA21-like domain ABC_tran PF00005.22 gi|336251847|ref|YP_004585815.1| - 2.3e-33 115.3 0.0 4.5e-33 114.4 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|336251847|ref|YP_004585815.1| - 2.2e-09 37.6 0.0 4.9e-07 30.0 0.0 2.2 1 1 0 1 1 1 1 AAA domain TOBE_2 PF08402.5 gi|336251847|ref|YP_004585815.1| - 5.1e-05 23.1 0.1 0.0083 16.0 0.1 2.6 1 1 0 1 1 1 1 TOBE domain Rad17 PF03215.10 gi|336251847|ref|YP_004585815.1| - 0.00025 19.8 0.0 0.00035 19.3 0.0 1.1 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein SMC_N PF02463.14 gi|336251847|ref|YP_004585815.1| - 0.00025 20.3 0.1 0.00091 18.5 0.1 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|336251847|ref|YP_004585815.1| - 0.0008 18.5 0.0 0.044 12.8 0.0 2.1 1 1 1 2 2 2 1 AAA ATPase domain AAA_29 PF13555.1 gi|336251847|ref|YP_004585815.1| - 0.002 17.6 0.0 0.0045 16.4 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|336251847|ref|YP_004585815.1| - 0.004 17.1 0.1 0.012 15.5 0.0 1.8 2 0 0 2 2 2 1 AAA ATPase domain AAA_5 PF07728.9 gi|336251847|ref|YP_004585815.1| - 0.0068 16.1 0.0 0.017 14.8 0.0 1.7 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) DUF258 PF03193.11 gi|336251847|ref|YP_004585815.1| - 0.016 14.4 0.0 0.029 13.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA PF00004.24 gi|336251847|ref|YP_004585815.1| - 0.017 15.2 0.0 0.041 14.0 0.0 1.7 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) TOBE PF03459.12 gi|336251847|ref|YP_004585815.1| - 0.018 15.1 0.0 1.8 8.7 0.0 3.3 4 0 0 4 4 4 0 TOBE domain AAA_22 PF13401.1 gi|336251847|ref|YP_004585815.1| - 0.028 14.5 0.2 0.072 13.2 0.0 1.7 2 0 0 2 2 1 0 AAA domain AAA_14 PF13173.1 gi|336251847|ref|YP_004585815.1| - 0.051 13.4 0.0 0.096 12.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|336251847|ref|YP_004585815.1| - 0.054 14.3 0.4 0.17 12.7 0.2 2.0 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|336251847|ref|YP_004585815.1| - 0.06 13.2 0.2 0.16 11.8 0.2 1.8 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|336251847|ref|YP_004585815.1| - 0.062 13.6 0.1 0.17 12.1 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|336251847|ref|YP_004585815.1| - 0.068 12.5 0.5 0.29 10.5 0.0 2.2 2 1 0 2 2 2 0 AAA domain GFO_IDH_MocA PF01408.17 gi|336251849|ref|YP_004585817.1| - 2.9e-23 82.6 0.0 7.7e-23 81.2 0.0 1.7 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|336251849|ref|YP_004585817.1| - 0.00079 19.1 0.0 0.0015 18.2 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain CoA_binding PF02629.14 gi|336251849|ref|YP_004585817.1| - 0.011 16.2 0.0 0.022 15.2 0.0 1.5 1 0 0 1 1 1 0 CoA binding domain TrkA_N PF02254.13 gi|336251849|ref|YP_004585817.1| - 0.027 14.4 0.1 0.083 12.8 0.0 1.9 2 0 0 2 2 2 0 TrkA-N domain F420_oxidored PF03807.12 gi|336251849|ref|YP_004585817.1| - 0.032 14.6 0.0 0.077 13.4 0.0 1.7 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent Semialdhyde_dh PF01118.19 gi|336251849|ref|YP_004585817.1| - 0.068 13.4 0.0 0.13 12.5 0.0 1.5 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain Methyltransf_31 PF13847.1 gi|336251850|ref|YP_004585818.1| - 1.2e-16 60.7 0.0 1.5e-16 60.3 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|336251850|ref|YP_004585818.1| - 5.1e-13 49.5 0.3 1.8e-12 47.8 0.2 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|336251850|ref|YP_004585818.1| - 7.7e-13 48.7 0.1 1e-11 45.1 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|336251850|ref|YP_004585818.1| - 3.6e-10 40.2 0.0 8e-10 39.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|336251850|ref|YP_004585818.1| - 4.1e-10 39.2 0.2 7.4e-10 38.4 0.0 1.4 2 0 0 2 2 2 1 Methyltransferase small domain Ubie_methyltran PF01209.13 gi|336251850|ref|YP_004585818.1| - 2.3e-09 36.7 0.0 2.7e-08 33.2 0.0 1.9 1 1 1 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.1 gi|336251850|ref|YP_004585818.1| - 7.2e-09 35.9 0.0 1.3e-08 35.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|336251850|ref|YP_004585818.1| - 2.3e-08 33.9 0.0 2.7e-08 33.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|336251850|ref|YP_004585818.1| - 3.2e-07 30.3 0.1 4.5e-07 29.9 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|336251850|ref|YP_004585818.1| - 3.5e-06 26.3 0.0 5.3e-06 25.7 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) UPF0020 PF01170.13 gi|336251850|ref|YP_004585818.1| - 0.00012 21.6 0.0 0.00019 21.0 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 RrnaAD PF00398.15 gi|336251850|ref|YP_004585818.1| - 0.015 14.2 0.0 0.021 13.8 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase tRNA_U5-meth_tr PF05958.6 gi|336251850|ref|YP_004585818.1| - 0.042 12.5 0.0 0.057 12.1 0.0 1.2 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase Methyltransf_4 PF02390.12 gi|336251850|ref|YP_004585818.1| - 0.055 12.5 0.0 0.082 11.9 0.0 1.3 1 0 0 1 1 1 0 Putative methyltransferase PCMT PF01135.14 gi|336251850|ref|YP_004585818.1| - 0.063 12.8 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) DREV PF05219.7 gi|336251850|ref|YP_004585818.1| - 0.069 12.0 0.0 0.18 10.6 0.0 1.6 2 0 0 2 2 2 0 DREV methyltransferase Methyltransf_32 PF13679.1 gi|336251850|ref|YP_004585818.1| - 0.085 12.5 0.0 0.18 11.4 0.0 1.6 2 0 0 2 2 2 0 Methyltransferase domain Pyr_redox_2 PF07992.9 gi|336251851|ref|YP_004585819.1| - 2.6e-15 56.8 0.0 3.4e-15 56.4 0.0 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|336251851|ref|YP_004585819.1| - 1.1e-11 44.2 2.4 3.3e-06 26.2 0.0 3.3 1 1 1 2 2 2 2 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|336251851|ref|YP_004585819.1| - 1.4e-08 33.6 0.0 4.4e-05 22.1 0.0 2.3 2 0 0 2 2 2 2 HI0933-like protein Pyr_redox_3 PF13738.1 gi|336251851|ref|YP_004585819.1| - 2.7e-08 34.1 0.1 0.00021 21.4 0.0 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|336251851|ref|YP_004585819.1| - 2.9e-08 33.0 0.3 0.0022 16.9 0.0 2.4 2 1 1 3 3 3 2 Lycopene cyclase protein FAD_binding_2 PF00890.19 gi|336251851|ref|YP_004585819.1| - 6.7e-08 31.7 0.3 6.5e-07 28.5 0.1 2.3 1 1 0 3 3 3 1 FAD binding domain NAD_binding_9 PF13454.1 gi|336251851|ref|YP_004585819.1| - 9.6e-08 31.9 0.7 0.002 17.9 0.0 2.5 2 0 0 2 2 2 2 FAD-NAD(P)-binding FAD_binding_3 PF01494.14 gi|336251851|ref|YP_004585819.1| - 5.8e-05 22.3 0.1 0.0002 20.5 0.0 1.8 2 0 0 2 2 2 1 FAD binding domain GIDA PF01134.17 gi|336251851|ref|YP_004585819.1| - 0.00074 18.4 3.2 0.022 13.6 0.1 3.1 3 1 1 4 4 4 1 Glucose inhibited division protein A NAD_binding_8 PF13450.1 gi|336251851|ref|YP_004585819.1| - 0.00086 19.2 0.0 0.0019 18.2 0.0 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.2 gi|336251851|ref|YP_004585819.1| - 0.0019 17.3 0.1 0.0029 16.7 0.1 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Thi4 PF01946.12 gi|336251851|ref|YP_004585819.1| - 0.0051 15.9 0.0 0.0098 15.0 0.0 1.4 1 0 0 1 1 1 1 Thi4 family Trp_halogenase PF04820.9 gi|336251851|ref|YP_004585819.1| - 0.016 13.9 3.0 0.25 9.9 0.0 2.6 3 0 0 3 3 3 0 Tryptophan halogenase K_oxygenase PF13434.1 gi|336251851|ref|YP_004585819.1| - 0.081 11.8 0.1 4 6.2 0.0 2.1 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) TrmB PF01978.14 gi|336251852|ref|YP_004585820.1| - 2.2e-11 43.2 0.0 4.1e-11 42.4 0.0 1.4 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|336251852|ref|YP_004585820.1| - 0.00013 21.7 0.1 0.00033 20.3 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|336251852|ref|YP_004585820.1| - 0.00022 20.7 0.0 0.00037 20.0 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.7 gi|336251852|ref|YP_004585820.1| - 0.00023 20.7 0.0 0.00059 19.4 0.0 1.7 2 0 0 2 2 2 1 HTH domain HTH_38 PF13936.1 gi|336251852|ref|YP_004585820.1| - 0.00085 18.8 0.0 0.0045 16.5 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|336251852|ref|YP_004585820.1| - 0.0025 17.1 0.0 0.0046 16.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_29 PF13551.1 gi|336251852|ref|YP_004585820.1| - 0.0059 16.7 0.0 0.0096 16.0 0.0 1.4 1 1 0 1 1 1 1 Winged helix-turn helix MarR_2 PF12802.2 gi|336251852|ref|YP_004585820.1| - 0.0061 16.2 0.0 0.013 15.1 0.0 1.6 2 0 0 2 2 2 1 MarR family RuvB_C PF05491.8 gi|336251852|ref|YP_004585820.1| - 0.015 14.8 0.0 0.026 14.1 0.0 1.3 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB C-terminus PadR PF03551.9 gi|336251852|ref|YP_004585820.1| - 0.019 14.7 0.0 0.047 13.4 0.0 1.6 1 1 0 1 1 1 0 Transcriptional regulator PadR-like family Penicillinase_R PF03965.11 gi|336251852|ref|YP_004585820.1| - 0.055 13.5 0.0 0.091 12.8 0.0 1.4 1 0 0 1 1 1 0 Penicillinase repressor HTH_5 PF01022.15 gi|336251852|ref|YP_004585820.1| - 0.057 13.0 0.0 0.1 12.2 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.14 gi|336251852|ref|YP_004585820.1| - 0.12 12.3 0.1 0.23 11.3 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_23 PF13384.1 gi|336251852|ref|YP_004585820.1| - 0.14 11.8 0.3 0.55 9.9 0.0 2.0 2 1 0 2 2 2 0 Homeodomain-like domain Phage_integrase PF00589.17 gi|336251853|ref|YP_004585821.1| - 1.2e-08 34.8 0.0 3.8e-08 33.1 0.0 1.8 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.12 gi|336251853|ref|YP_004585821.1| - 0.0088 16.1 1.1 0.96 9.6 0.0 3.3 3 1 1 4 4 4 1 Phage integrase, N-terminal SAM-like domain HTH_29 PF13551.1 gi|336251853|ref|YP_004585821.1| - 0.014 15.5 0.3 0.082 13.0 0.1 2.3 2 0 0 2 2 2 0 Winged helix-turn helix Caudal_act PF04731.7 gi|336251853|ref|YP_004585821.1| - 0.039 14.2 1.6 0.11 12.8 0.1 2.2 2 0 0 2 2 2 0 Caudal like protein activation region NAD_binding_10 PF13460.1 gi|336251854|ref|YP_004585822.1| - 1.7e-38 132.4 1.2 1.9e-38 132.2 0.8 1.0 1 0 0 1 1 1 1 NADH(P)-binding Epimerase PF01370.16 gi|336251854|ref|YP_004585822.1| - 1.4e-06 27.9 0.0 1.6e-06 27.7 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family TrkA_N PF02254.13 gi|336251854|ref|YP_004585822.1| - 1.9e-05 24.6 0.1 2.9e-05 24.0 0.1 1.3 1 0 0 1 1 1 1 TrkA-N domain Saccharop_dh PF03435.13 gi|336251854|ref|YP_004585822.1| - 3.1e-05 23.1 0.1 3.7e-05 22.8 0.0 1.1 1 0 0 1 1 1 1 Saccharopine dehydrogenase NmrA PF05368.8 gi|336251854|ref|YP_004585822.1| - 0.00062 19.0 0.0 0.00087 18.6 0.0 1.2 1 0 0 1 1 1 1 NmrA-like family adh_short PF00106.20 gi|336251854|ref|YP_004585822.1| - 0.0012 18.7 1.3 0.0029 17.5 0.9 1.8 1 1 0 1 1 1 1 short chain dehydrogenase RmlD_sub_bind PF04321.12 gi|336251854|ref|YP_004585822.1| - 0.0096 14.8 0.1 0.014 14.2 0.1 1.3 1 0 0 1 1 1 1 RmlD substrate binding domain DFP PF04127.10 gi|336251854|ref|YP_004585822.1| - 0.015 14.9 0.0 0.023 14.2 0.0 1.2 1 0 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein ApbA PF02558.11 gi|336251854|ref|YP_004585822.1| - 0.034 13.6 0.0 0.046 13.1 0.0 1.2 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA DapB_N PF01113.15 gi|336251854|ref|YP_004585822.1| - 0.052 13.4 0.1 0.083 12.8 0.1 1.4 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus zf-ribbon_3 PF13248.1 gi|336251856|ref|YP_004585824.1| - 4.3e-06 25.7 0.6 6.2e-06 25.2 0.4 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|336251856|ref|YP_004585824.1| - 1.7e-05 24.5 1.0 2.8e-05 23.8 0.7 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|336251856|ref|YP_004585824.1| - 7.9e-05 22.0 1.0 0.00011 21.5 0.7 1.3 1 0 0 1 1 1 1 zinc-ribbon domain TM2 PF05154.11 gi|336251856|ref|YP_004585824.1| - 0.0018 18.4 0.9 0.0024 18.0 0.1 1.5 2 0 0 2 2 2 1 TM2 domain Nudix_N_2 PF14803.1 gi|336251856|ref|YP_004585824.1| - 0.072 12.7 0.4 7.7 6.3 0.0 2.3 2 0 0 2 2 2 0 Nudix N-terminal HTH_31 PF13560.1 gi|336251856|ref|YP_004585824.1| - 0.13 12.4 0.2 0.13 12.4 0.2 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain Cys_rich_CPXG PF14255.1 gi|336251856|ref|YP_004585824.1| - 0.19 11.5 1.6 0.35 10.7 1.1 1.5 1 0 0 1 1 1 0 Cysteine-rich CPXCG zf-RING_3 PF14369.1 gi|336251856|ref|YP_004585824.1| - 0.26 11.2 4.9 0.62 10.1 0.2 2.3 2 0 0 2 2 2 0 zinc-finger TetR_C_6 PF13977.1 gi|336251857|ref|YP_004585825.1| - 1.5e-10 41.1 1.0 3e-10 40.1 0.5 1.7 1 1 1 2 2 2 1 Bacterial transcriptional repressor TetR_N PF00440.18 gi|336251857|ref|YP_004585825.1| - 4.5e-08 32.5 0.0 8.7e-08 31.6 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family Phage_connect_1 PF05135.8 gi|336251857|ref|YP_004585825.1| - 0.076 13.1 0.1 11 6.2 0.1 2.3 2 0 0 2 2 2 0 Phage gp6-like head-tail connector protein GAD-like PF08887.6 gi|336251857|ref|YP_004585825.1| - 0.1 12.6 0.0 0.23 11.5 0.0 1.7 1 0 0 1 1 1 0 GAD-like domain DUF3139 PF11337.3 gi|336251857|ref|YP_004585825.1| - 0.14 12.4 0.1 0.26 11.5 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3139) ABC_tran PF00005.22 gi|336251858|ref|YP_004585826.1| - 1.7e-33 115.8 0.0 2.6e-33 115.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|336251858|ref|YP_004585826.1| - 2.5e-11 44.0 0.0 1.8e-05 24.8 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|336251858|ref|YP_004585826.1| - 4.5e-06 26.1 0.0 8.6e-06 25.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|336251858|ref|YP_004585826.1| - 9.6e-05 21.6 0.0 0.00016 20.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|336251858|ref|YP_004585826.1| - 0.00064 20.1 0.0 0.00097 19.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.18 gi|336251858|ref|YP_004585826.1| - 0.00077 19.4 0.0 0.0023 17.8 0.0 2.0 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_22 PF13401.1 gi|336251858|ref|YP_004585826.1| - 0.0017 18.5 0.1 0.078 13.1 0.0 2.9 2 1 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|336251858|ref|YP_004585826.1| - 0.0022 17.4 0.1 0.14 11.5 0.0 2.2 2 0 0 2 2 2 1 AAA-like domain AAA_16 PF13191.1 gi|336251858|ref|YP_004585826.1| - 0.0024 17.8 0.1 0.0077 16.2 0.0 1.8 1 1 1 2 2 2 1 AAA ATPase domain AAA_15 PF13175.1 gi|336251858|ref|YP_004585826.1| - 0.0033 16.5 0.0 0.39 9.6 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_33 PF13671.1 gi|336251858|ref|YP_004585826.1| - 0.0047 16.8 0.0 0.02 14.7 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|336251858|ref|YP_004585826.1| - 0.018 15.8 0.4 0.061 14.1 0.3 2.1 1 1 0 1 1 1 0 AAA domain SMC_N PF02463.14 gi|336251858|ref|YP_004585826.1| - 0.022 13.9 0.0 0.87 8.7 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain SbcCD_C PF13558.1 gi|336251858|ref|YP_004585826.1| - 0.073 12.9 0.0 0.36 10.7 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit ArgK PF03308.11 gi|336251858|ref|YP_004585826.1| - 0.077 11.7 0.0 0.14 10.9 0.0 1.4 1 0 0 1 1 1 0 ArgK protein Mg_chelatase PF01078.16 gi|336251858|ref|YP_004585826.1| - 0.092 11.8 0.0 0.16 11.0 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Miro PF08477.8 gi|336251858|ref|YP_004585826.1| - 0.092 13.2 0.0 0.22 12.0 0.0 1.6 1 0 0 1 1 1 0 Miro-like protein MobB PF03205.9 gi|336251858|ref|YP_004585826.1| - 0.11 12.1 0.2 0.48 10.1 0.0 2.0 3 0 0 3 3 2 0 Molybdopterin guanine dinucleotide synthesis protein B ABC2_membrane PF01061.19 gi|336251859|ref|YP_004585827.1| - 2.8e-38 131.1 15.7 3.7e-38 130.7 10.9 1.2 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|336251859|ref|YP_004585827.1| - 8.9e-19 67.7 22.9 8.9e-19 67.7 15.9 1.9 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|336251859|ref|YP_004585827.1| - 9.4e-08 31.2 19.9 3.1e-07 29.5 13.8 1.8 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|336251859|ref|YP_004585827.1| - 9.6e-08 31.4 17.4 1.3e-07 31.0 12.1 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|336251859|ref|YP_004585827.1| - 0.076 12.2 11.6 0.14 11.4 7.8 1.6 1 1 0 1 1 1 0 ABC-2 family transporter protein OmdA PF13376.1 gi|336251860|ref|YP_004585828.1| - 6.9e-19 67.2 3.0 1.6e-18 66.0 2.1 1.7 1 0 0 1 1 1 1 Bacteriocin-protection, YdeI or OmpD-Associated R3H-assoc PF13902.1 gi|336251860|ref|YP_004585828.1| - 0.026 14.4 3.5 0.047 13.6 2.1 1.6 1 1 1 2 2 2 0 R3H-associated N-terminal domain CBS PF00571.23 gi|336251861|ref|YP_004585829.1| - 8.4e-29 99.1 2.9 1.7e-15 56.4 0.1 2.4 2 0 0 2 2 2 2 CBS domain Peptidase_M50 PF02163.17 gi|336251861|ref|YP_004585829.1| - 1.2e-19 69.9 14.3 3e-15 55.6 3.7 2.5 1 1 1 2 2 2 2 Peptidase family M50 Peptidase_M50B PF13398.1 gi|336251861|ref|YP_004585829.1| - 0.00012 21.5 3.1 0.00012 21.5 2.1 2.0 2 0 0 2 2 2 1 Peptidase M50B-like Peptidase_MA_2 PF13485.1 gi|336251861|ref|YP_004585829.1| - 0.0056 16.7 0.1 0.013 15.5 0.0 1.5 1 0 0 1 1 1 1 Peptidase MA superfamily Abhydrolase_3 PF07859.8 gi|336251862|ref|YP_004585830.1| - 5.5e-71 238.4 0.7 6.6e-71 238.2 0.5 1.1 1 0 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|336251862|ref|YP_004585830.1| - 4.5e-09 36.2 0.1 5.8e-09 35.8 0.1 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family COesterase PF00135.23 gi|336251862|ref|YP_004585830.1| - 3.3e-08 32.6 0.2 8.4e-08 31.3 0.1 1.5 1 1 0 1 1 1 1 Carboxylesterase family Peptidase_S15 PF02129.13 gi|336251862|ref|YP_004585830.1| - 7.5e-05 22.2 0.0 0.0026 17.2 0.0 2.2 2 0 0 2 2 2 1 X-Pro dipeptidyl-peptidase (S15 family) Peptidase_S9 PF00326.16 gi|336251862|ref|YP_004585830.1| - 0.00084 18.6 0.2 0.0024 17.1 0.1 1.7 1 1 0 1 1 1 1 Prolyl oligopeptidase family AXE1 PF05448.7 gi|336251862|ref|YP_004585830.1| - 0.009 14.5 0.1 0.67 8.3 0.1 2.1 2 0 0 2 2 2 2 Acetyl xylan esterase (AXE1) DUF2424 PF10340.4 gi|336251862|ref|YP_004585830.1| - 0.023 13.3 0.0 0.046 12.3 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2424) Chlorophyllase2 PF12740.2 gi|336251862|ref|YP_004585830.1| - 0.03 13.2 0.0 0.056 12.3 0.0 1.4 1 1 0 1 1 1 0 Chlorophyllase enzyme Chlorophyllase PF07224.6 gi|336251862|ref|YP_004585830.1| - 0.12 11.1 0.0 0.19 10.4 0.0 1.2 1 0 0 1 1 1 0 Chlorophyllase NosL PF05573.7 gi|336251863|ref|YP_004585831.1| - 0.063 12.9 0.0 0.063 12.9 0.0 1.2 1 0 0 1 1 1 0 NosL HTH_10 PF04967.7 gi|336251864|ref|YP_004585832.1| - 1.7e-14 53.0 0.2 4.5e-14 51.7 0.0 1.8 2 0 0 2 2 2 1 HTH DNA binding domain HTH_30 PF13556.1 gi|336251864|ref|YP_004585832.1| - 0.0001 21.8 0.0 0.00026 20.5 0.0 1.6 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain MarR_2 PF12802.2 gi|336251864|ref|YP_004585832.1| - 0.00025 20.6 0.0 0.00081 19.0 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_8 PF02954.14 gi|336251864|ref|YP_004585832.1| - 0.036 13.5 0.0 0.1 12.1 0.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family HTH_20 PF12840.2 gi|336251864|ref|YP_004585832.1| - 0.046 13.5 0.1 0.12 12.2 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.1 gi|336251864|ref|YP_004585832.1| - 0.057 12.8 0.0 0.091 12.1 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_psq PF05225.11 gi|336251864|ref|YP_004585832.1| - 0.095 12.2 0.0 0.29 10.7 0.0 1.9 1 0 0 1 1 1 0 helix-turn-helix, Psq domain HTH_5 PF01022.15 gi|336251864|ref|YP_004585832.1| - 0.1 12.2 0.0 0.21 11.3 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family DUF162 PF02589.10 gi|336251865|ref|YP_004585833.1| - 4e-36 124.3 0.3 4.8e-36 124.0 0.2 1.2 1 0 0 1 1 1 1 Uncharacterised ACR, YkgG family COG1556 YcaO PF02624.11 gi|336251865|ref|YP_004585833.1| - 0.022 14.2 0.0 0.031 13.7 0.0 1.2 1 0 0 1 1 1 0 YcaO-like family DUF257 PF03192.8 gi|336251865|ref|YP_004585833.1| - 0.11 11.7 0.0 0.5 9.6 0.0 1.8 2 0 0 2 2 2 0 Pyrococcus protein of unknown function, DUF257 BROMI PF14961.1 gi|336251866|ref|YP_004585834.1| - 0.027 11.6 0.0 0.03 11.4 0.0 1.0 1 0 0 1 1 1 0 Broad-minded protein Nudix_N_2 PF14803.1 gi|336251866|ref|YP_004585834.1| - 0.38 10.4 1.8 0.41 10.3 0.2 1.8 2 0 0 2 2 2 0 Nudix N-terminal E1-E2_ATPase PF00122.15 gi|336251867|ref|YP_004585835.1| - 8.5e-59 198.3 0.0 1.6e-58 197.4 0.0 1.5 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.21 gi|336251867|ref|YP_004585835.1| - 5.1e-46 157.7 3.4 1.2e-45 156.6 2.0 1.9 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|336251867|ref|YP_004585835.1| - 8.6e-16 58.6 0.1 1.7e-15 57.6 0.1 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|336251867|ref|YP_004585835.1| - 8.9e-16 57.7 0.0 3.4e-15 55.9 0.0 2.1 2 0 0 2 2 2 1 Heavy-metal-associated domain Hydrolase_3 PF08282.7 gi|336251867|ref|YP_004585835.1| - 0.0046 16.5 0.4 0.027 14.0 0.3 1.9 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Myosin_N PF02736.14 gi|336251867|ref|YP_004585835.1| - 0.13 11.9 1.1 6 6.6 0.0 2.7 2 0 0 2 2 2 0 Myosin N-terminal SH3-like domain MCPsignal PF00015.16 gi|336251868|ref|YP_004585836.1| - 3.7e-54 183.4 53.1 3.4e-52 177.0 23.0 2.8 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain Protoglobin PF11563.3 gi|336251868|ref|YP_004585836.1| - 4.1e-38 130.5 0.7 1.8e-37 128.4 0.5 2.2 1 1 0 1 1 1 1 Protoglobin DUF948 PF06103.6 gi|336251868|ref|YP_004585836.1| - 5.6e-05 22.9 30.5 0.00078 19.2 1.3 5.0 3 2 2 5 5 5 3 Bacterial protein of unknown function (DUF948) Sec8_exocyst PF04048.9 gi|336251868|ref|YP_004585836.1| - 0.00013 21.6 15.8 0.0039 16.8 0.0 4.1 2 1 1 4 4 4 2 Sec8 exocyst complex component specific domain AAA_13 PF13166.1 gi|336251868|ref|YP_004585836.1| - 0.00041 18.9 17.6 0.00041 18.9 12.2 2.7 2 1 1 3 3 3 2 AAA domain Spc7 PF08317.6 gi|336251868|ref|YP_004585836.1| - 0.00062 18.5 6.4 0.00062 18.5 4.4 2.9 3 1 0 3 3 3 2 Spc7 kinetochore protein Laminin_II PF06009.7 gi|336251868|ref|YP_004585836.1| - 0.00083 19.1 38.6 0.0013 18.5 1.6 5.5 3 2 3 6 6 6 2 Laminin Domain II Sec5 PF15469.1 gi|336251868|ref|YP_004585836.1| - 0.0023 17.6 0.6 0.0023 17.6 0.4 4.0 2 1 1 4 4 4 1 Exocyst complex component Sec5 Bac_globin PF01152.16 gi|336251868|ref|YP_004585836.1| - 0.004 17.1 0.0 0.004 17.1 0.0 3.0 4 0 0 4 4 2 1 Bacterial-like globin Muted PF14942.1 gi|336251868|ref|YP_004585836.1| - 0.008 16.0 24.6 0.45 10.3 5.9 3.8 3 1 1 4 4 4 2 Organelle biogenesis, Muted-like protein Fzo_mitofusin PF04799.8 gi|336251868|ref|YP_004585836.1| - 0.02 14.2 0.8 0.02 14.2 0.6 5.0 3 2 2 5 5 5 0 fzo-like conserved region Tet_JBP PF12851.2 gi|336251868|ref|YP_004585836.1| - 0.024 13.9 0.6 8.3 5.6 0.1 3.5 4 1 0 5 5 5 0 Oxygenase domain of the 2OGFeDO superfamily Fib_alpha PF08702.5 gi|336251868|ref|YP_004585836.1| - 0.026 14.6 21.5 0.51 10.4 0.8 5.0 3 2 2 5 5 5 0 Fibrinogen alpha/beta chain family HisK_N PF09385.5 gi|336251868|ref|YP_004585836.1| - 0.03 13.9 4.1 0.041 13.4 0.6 2.7 2 2 1 3 3 3 0 Histidine kinase N terminal DUF1664 PF07889.7 gi|336251868|ref|YP_004585836.1| - 0.082 12.7 31.4 0.16 11.7 3.6 5.2 2 1 5 7 7 6 0 Protein of unknown function (DUF1664) Baculo_PEP_C PF04513.7 gi|336251868|ref|YP_004585836.1| - 0.093 12.5 29.7 0.047 13.5 1.3 4.9 3 2 2 5 5 5 0 Baculovirus polyhedron envelope protein, PEP, C terminus RmuC PF02646.11 gi|336251868|ref|YP_004585836.1| - 0.096 11.5 24.9 0.16 10.7 0.6 5.4 3 2 3 6 6 6 0 RmuC family NPV_P10 PF05531.7 gi|336251868|ref|YP_004585836.1| - 0.27 11.5 35.6 13 6.1 0.9 7.0 5 2 2 7 7 6 0 Nucleopolyhedrovirus P10 protein Syntaxin-6_N PF09177.6 gi|336251868|ref|YP_004585836.1| - 0.27 11.6 34.9 0.2 12.1 1.1 5.9 3 2 3 6 6 6 0 Syntaxin 6, N-terminal Syntaxin PF00804.20 gi|336251868|ref|YP_004585836.1| - 0.33 11.1 32.6 0.075 13.2 2.0 5.2 3 2 2 5 5 5 0 Syntaxin PMC2NT PF08066.7 gi|336251868|ref|YP_004585836.1| - 0.33 11.2 16.9 0.14 12.4 1.2 4.4 2 2 3 5 5 5 0 PMC2NT (NUC016) domain TMP_2 PF06791.8 gi|336251868|ref|YP_004585836.1| - 0.39 10.3 26.4 0.19 11.2 5.0 3.1 1 1 2 3 3 3 0 Prophage tail length tape measure protein Hormone_1 PF00103.15 gi|336251868|ref|YP_004585836.1| - 0.46 9.7 8.1 0.24 10.6 0.1 3.4 3 2 2 5 5 5 0 Somatotropin hormone family Herpes_capsid PF06112.6 gi|336251868|ref|YP_004585836.1| - 0.73 9.8 6.4 0.67 9.9 0.0 2.5 2 0 0 2 2 2 0 Gammaherpesvirus capsid protein PTRF_SDPR PF15237.1 gi|336251868|ref|YP_004585836.1| - 1.8 7.9 19.3 0.11 11.9 0.9 3.5 3 2 1 4 4 3 0 PTRF/SDPR family APG6 PF04111.7 gi|336251868|ref|YP_004585836.1| - 2.2 7.2 29.7 0.48 9.4 6.2 3.0 3 0 0 3 3 3 0 Autophagy protein Apg6 DASH_Dam1 PF08653.5 gi|336251868|ref|YP_004585836.1| - 4.6 7.0 7.7 4 7.2 0.1 4.2 5 0 0 5 5 4 0 DASH complex subunit Dam1 Reo_sigmaC PF04582.7 gi|336251868|ref|YP_004585836.1| - 4.7 6.3 30.4 2 7.5 7.3 3.3 1 1 2 3 3 3 0 Reovirus sigma C capsid protein BLOC1_2 PF10046.4 gi|336251868|ref|YP_004585836.1| - 4.8 7.3 34.1 0.88 9.7 0.7 6.0 4 2 2 6 6 6 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 LOH1CR12 PF10158.4 gi|336251868|ref|YP_004585836.1| - 7.1 6.4 18.7 8.6 6.1 1.2 4.7 2 1 5 7 7 6 0 Tumour suppressor protein IncA PF04156.9 gi|336251868|ref|YP_004585836.1| - 7.6 6.0 37.4 1.5 8.3 7.3 4.3 2 1 1 3 3 3 0 IncA protein Med9 PF07544.8 gi|336251868|ref|YP_004585836.1| - 7.8 6.3 22.5 0.28 10.9 0.4 5.4 4 2 2 6 6 6 0 RNA polymerase II transcription mediator complex subunit 9 COG2 PF06148.6 gi|336251868|ref|YP_004585836.1| - 8.9 6.1 29.7 8.3 6.2 0.9 5.6 3 2 2 5 5 5 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF4234 PF14018.1 gi|336251869|ref|YP_004585837.1| - 0.067 12.9 0.1 0.071 12.8 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4234) DUF4349 PF14257.1 gi|336251869|ref|YP_004585837.1| - 0.11 11.7 0.6 0.11 11.6 0.4 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4349) Usp PF00582.21 gi|336251870|ref|YP_004585838.1| - 1.4e-31 109.5 1.4 1.6e-31 109.3 1.0 1.0 1 0 0 1 1 1 1 Universal stress protein family GHL6 PF14871.1 gi|336251870|ref|YP_004585838.1| - 0.018 15.0 0.1 0.024 14.6 0.0 1.1 1 0 0 1 1 1 0 Hypothetical glycosyl hydrolase 6 Dodecin PF07311.7 gi|336251870|ref|YP_004585838.1| - 0.11 12.5 0.1 3.3 7.8 0.0 2.2 2 0 0 2 2 2 0 Dodecin CobU PF02283.11 gi|336251870|ref|YP_004585838.1| - 0.11 11.9 0.0 0.18 11.2 0.0 1.4 1 1 0 1 1 1 0 Cobinamide kinase / cobinamide phosphate guanyltransferase DUF187 PF02638.10 gi|336251870|ref|YP_004585838.1| - 0.15 10.9 0.0 0.16 10.8 0.0 1.1 1 0 0 1 1 1 0 Glycosyl hydrolase like GH101 HMA PF00403.21 gi|336251871|ref|YP_004585839.1| - 6.5e-19 67.8 0.5 7.1e-19 67.7 0.3 1.0 1 0 0 1 1 1 1 Heavy-metal-associated domain HHH PF00633.18 gi|336251871|ref|YP_004585839.1| - 0.025 14.2 0.1 0.064 12.9 0.0 1.7 1 0 0 1 1 1 0 Helix-hairpin-helix motif DUF2997 PF11211.3 gi|336251871|ref|YP_004585839.1| - 0.5 9.7 5.9 0.06 12.7 1.0 1.8 3 0 0 3 3 3 0 Protein of unknown function (DUF2997) HTH_AsnC-type PF13404.1 gi|336251872|ref|YP_004585840.1| - 1.8e-16 59.3 0.4 4.1e-16 58.2 0.0 1.8 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|336251872|ref|YP_004585840.1| - 4.3e-15 54.8 0.0 6.8e-15 54.1 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|336251872|ref|YP_004585840.1| - 2.6e-06 27.1 0.0 4.5e-06 26.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|336251872|ref|YP_004585840.1| - 6.9e-06 25.6 0.0 1.1e-05 25.0 0.0 1.3 1 0 0 1 1 1 1 MarR family Arc_trans_TRASH PF08394.5 gi|336251872|ref|YP_004585840.1| - 4.6e-05 23.4 1.8 6.7e-05 22.9 1.3 1.2 1 0 0 1 1 1 1 Archaeal TRASH domain HTH_5 PF01022.15 gi|336251872|ref|YP_004585840.1| - 0.0001 21.9 0.0 0.00015 21.3 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family YHS PF04945.8 gi|336251872|ref|YP_004585840.1| - 0.00017 21.3 0.8 0.00032 20.4 0.5 1.4 1 0 0 1 1 1 1 YHS domain MarR PF01047.17 gi|336251872|ref|YP_004585840.1| - 0.00047 19.8 0.0 0.00075 19.1 0.0 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|336251872|ref|YP_004585840.1| - 0.0015 18.1 0.0 0.0028 17.3 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|336251872|ref|YP_004585840.1| - 0.0017 17.9 0.0 0.0031 17.0 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain zf-FCS PF06467.9 gi|336251872|ref|YP_004585840.1| - 0.0047 16.5 2.2 0.0078 15.8 1.5 1.4 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif LIM PF00412.17 gi|336251872|ref|YP_004585840.1| - 0.0057 16.7 1.1 0.0091 16.0 0.8 1.3 1 0 0 1 1 1 1 LIM domain HTH_34 PF13601.1 gi|336251872|ref|YP_004585840.1| - 0.0087 16.0 0.0 0.014 15.4 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain ATPase-cat_bd PF12156.3 gi|336251872|ref|YP_004585840.1| - 0.04 14.4 2.0 0.072 13.6 1.4 1.4 1 0 0 1 1 1 0 Putative metal-binding domain of cation transport ATPase Sigma70_r4 PF04545.11 gi|336251872|ref|YP_004585840.1| - 0.048 12.9 0.1 0.083 12.2 0.1 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 Ta0938 PF11494.3 gi|336251872|ref|YP_004585840.1| - 0.059 13.4 0.6 0.12 12.5 0.4 1.5 1 0 0 1 1 1 0 Ta0938 Hydrolase PF00702.21 gi|336251873|ref|YP_004585841.1| - 8.2e-53 179.9 7.0 8.2e-53 179.9 4.8 1.6 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase E1-E2_ATPase PF00122.15 gi|336251873|ref|YP_004585841.1| - 4e-52 176.5 0.0 9.2e-52 175.3 0.0 1.6 1 0 0 1 1 1 1 E1-E2 ATPase HMA PF00403.21 gi|336251873|ref|YP_004585841.1| - 3e-25 88.1 0.0 3.5e-11 43.0 0.0 3.0 2 0 0 2 2 2 2 Heavy-metal-associated domain HAD PF12710.2 gi|336251873|ref|YP_004585841.1| - 1.1e-18 68.1 0.0 4.2e-18 66.1 0.0 2.1 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|336251873|ref|YP_004585841.1| - 5.1e-06 26.2 0.1 0.0096 15.5 0.4 3.1 3 0 0 3 3 3 2 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|336251873|ref|YP_004585841.1| - 0.0019 18.0 1.4 0.018 14.9 0.0 3.3 5 0 0 5 5 5 1 Haloacid dehalogenase-like hydrolase CBS PF00571.23 gi|336251873|ref|YP_004585841.1| - 0.034 13.9 0.4 2.2 8.1 0.0 3.4 2 1 1 3 3 3 0 CBS domain PgaD PF13994.1 gi|336251873|ref|YP_004585841.1| - 0.27 10.6 1.5 0.9 9.0 0.6 2.1 2 0 0 2 2 2 0 PgaD-like protein Usp PF00582.21 gi|336251874|ref|YP_004585842.1| - 1.1e-13 51.5 0.1 1.6e-13 51.0 0.1 1.1 1 0 0 1 1 1 1 Universal stress protein family Lsr2 PF11774.3 gi|336251874|ref|YP_004585842.1| - 0.027 14.3 0.0 0.053 13.4 0.0 1.5 1 0 0 1 1 1 0 Lsr2 Shikimate_dh_N PF08501.6 gi|336251875|ref|YP_004585843.1| - 1.2e-25 89.3 0.0 2.7e-25 88.2 0.0 1.6 1 0 0 1 1 1 1 Shikimate dehydrogenase substrate binding domain Shikimate_DH PF01488.15 gi|336251875|ref|YP_004585843.1| - 1e-14 54.7 0.0 1.5e-14 54.2 0.0 1.2 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.12 gi|336251875|ref|YP_004585843.1| - 0.00083 19.7 0.2 0.0019 18.5 0.1 1.6 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.14 gi|336251875|ref|YP_004585843.1| - 0.0011 18.2 0.0 0.0018 17.4 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|336251875|ref|YP_004585843.1| - 0.0074 16.5 0.0 0.012 15.8 0.0 1.3 1 0 0 1 1 1 1 Putative NAD(P)-binding IlvN PF07991.7 gi|336251875|ref|YP_004585843.1| - 0.012 14.9 0.1 0.018 14.4 0.1 1.2 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain THF_DHG_CYH_C PF02882.14 gi|336251875|ref|YP_004585843.1| - 0.049 12.6 0.0 0.085 11.9 0.0 1.4 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain B12-binding PF02310.14 gi|336251875|ref|YP_004585843.1| - 0.081 12.7 0.5 0.71 9.7 0.3 2.3 1 1 1 2 2 2 0 B12 binding domain Fig1 PF12351.3 gi|336251876|ref|YP_004585844.1| - 0.58 10.0 4.5 0.59 9.9 3.1 1.0 1 0 0 1 1 1 0 Ca2+ regulator and membrane fusion protein Fig1 DUF4400 PF14348.1 gi|336251876|ref|YP_004585844.1| - 0.78 9.0 5.3 0.86 8.9 3.7 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4400) DUF4131 PF13567.1 gi|336251876|ref|YP_004585844.1| - 2.7 7.3 9.0 2.9 7.2 6.3 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) Glyco_hydro_88 PF07470.8 gi|336251877|ref|YP_004585845.1| - 1.3e-55 188.7 0.0 1.8e-55 188.3 0.0 1.1 1 0 0 1 1 1 1 Glycosyl Hydrolase Family 88 Prenyltrans_2 PF13249.1 gi|336251877|ref|YP_004585845.1| - 0.00074 19.9 0.0 0.78 10.1 0.0 3.1 2 1 1 3 3 3 2 Prenyltransferase-like Prenyltrans_1 PF13243.1 gi|336251877|ref|YP_004585845.1| - 0.0096 15.9 0.2 5.2 7.1 0.0 3.1 2 1 1 3 3 3 1 Prenyltransferase-like C5-epim_C PF06662.8 gi|336251877|ref|YP_004585845.1| - 0.012 14.8 0.0 0.09 12.0 0.0 2.3 3 0 0 3 3 3 0 D-glucuronyl C5-epimerase C-terminus UxuA PF03786.8 gi|336251878|ref|YP_004585846.1| - 1.2e-50 172.0 0.0 7.6e-41 139.8 0.0 2.0 1 1 1 2 2 2 2 D-mannonate dehydratase (UxuA) AP_endonuc_2 PF01261.19 gi|336251878|ref|YP_004585846.1| - 2.9e-11 43.0 0.0 7.5e-11 41.7 0.0 1.6 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel CASP_C PF08172.7 gi|336251879|ref|YP_004585847.1| - 0.11 11.5 0.0 0.15 11.0 0.0 1.2 1 0 0 1 1 1 0 CASP C terminal Glyco_hydro_67N PF03648.9 gi|336251880|ref|YP_004585848.1| - 0.016 15.2 0.0 0.049 13.6 0.0 1.8 1 1 0 1 1 1 0 Glycosyl hydrolase family 67 N-terminus SBP_bac_5 PF00496.17 gi|336251882|ref|YP_004585850.1| - 3.3e-34 118.3 8.3 6.1e-34 117.4 3.3 2.2 2 0 0 2 2 2 2 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.4 gi|336251882|ref|YP_004585850.1| - 0.0083 16.0 1.0 0.014 15.3 0.7 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_1 PF00528.17 gi|336251883|ref|YP_004585851.1| - 7.6e-33 113.5 13.5 7.6e-33 113.5 9.3 1.9 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF1189 PF06691.6 gi|336251883|ref|YP_004585851.1| - 0.069 12.4 0.6 0.12 11.6 0.4 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1189) DUF2956 PF11169.3 gi|336251883|ref|YP_004585851.1| - 0.18 11.7 0.1 0.29 11.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2956) BPD_transp_1 PF00528.17 gi|336251884|ref|YP_004585852.1| - 1.6e-24 86.4 16.9 1.6e-24 86.4 11.7 2.0 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|336251885|ref|YP_004585853.1| - 3.5e-51 173.1 0.0 2.7e-27 95.7 0.0 2.2 2 0 0 2 2 2 2 ABC transporter oligo_HPY PF08352.7 gi|336251885|ref|YP_004585853.1| - 8.8e-35 118.8 6.9 3.8e-18 65.6 0.9 2.5 2 0 0 2 2 2 2 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|336251885|ref|YP_004585853.1| - 1.8e-18 67.4 6.9 3.8e-09 36.9 0.6 4.1 2 2 2 4 4 4 3 AAA domain SMC_N PF02463.14 gi|336251885|ref|YP_004585853.1| - 3.3e-07 29.7 1.7 0.047 12.9 0.0 3.9 3 1 0 3 3 3 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|336251885|ref|YP_004585853.1| - 3.7e-06 27.0 5.5 0.063 13.4 0.9 3.6 2 2 0 2 2 2 2 AAA domain AAA_25 PF13481.1 gi|336251885|ref|YP_004585853.1| - 3.8e-06 26.4 0.0 0.19 11.1 0.0 3.2 3 0 0 3 3 3 2 AAA domain AAA_16 PF13191.1 gi|336251885|ref|YP_004585853.1| - 5.2e-06 26.5 0.1 0.13 12.2 0.0 2.7 2 1 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.1 gi|336251885|ref|YP_004585853.1| - 5.9e-06 25.7 0.1 0.097 12.2 0.0 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|336251885|ref|YP_004585853.1| - 2.2e-05 24.0 0.0 0.0092 15.4 0.0 2.6 2 0 0 2 2 2 1 AAA-like domain NACHT PF05729.7 gi|336251885|ref|YP_004585853.1| - 2.8e-05 23.8 0.3 0.22 11.1 0.1 2.5 2 0 0 2 2 2 2 NACHT domain PhoH PF02562.11 gi|336251885|ref|YP_004585853.1| - 6.4e-05 22.2 0.0 0.42 9.8 0.0 2.4 2 0 0 2 2 2 2 PhoH-like protein AAA_23 PF13476.1 gi|336251885|ref|YP_004585853.1| - 0.00011 22.6 0.0 0.62 10.3 0.0 2.3 2 0 0 2 2 2 2 AAA domain DUF258 PF03193.11 gi|336251885|ref|YP_004585853.1| - 0.00027 20.1 0.2 0.12 11.5 0.1 2.3 2 0 0 2 2 2 1 Protein of unknown function, DUF258 AAA_15 PF13175.1 gi|336251885|ref|YP_004585853.1| - 0.00032 19.8 0.2 0.13 11.2 0.2 2.7 3 0 0 3 3 3 1 AAA ATPase domain AAA_33 PF13671.1 gi|336251885|ref|YP_004585853.1| - 0.00071 19.4 0.1 0.43 10.4 0.0 2.4 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.12 gi|336251885|ref|YP_004585853.1| - 0.00077 18.9 0.0 0.65 9.3 0.0 2.5 2 0 0 2 2 2 1 IstB-like ATP binding protein KaiC PF06745.8 gi|336251885|ref|YP_004585853.1| - 0.0011 18.1 0.2 0.58 9.2 0.1 2.4 2 0 0 2 2 2 1 KaiC RNA_helicase PF00910.17 gi|336251885|ref|YP_004585853.1| - 0.0011 19.0 0.2 0.88 9.7 0.1 2.5 2 0 0 2 2 2 1 RNA helicase Sigma54_activat PF00158.21 gi|336251885|ref|YP_004585853.1| - 0.0014 18.1 0.0 0.33 10.4 0.0 2.4 2 0 0 2 2 2 1 Sigma-54 interaction domain Miro PF08477.8 gi|336251885|ref|YP_004585853.1| - 0.0017 18.8 0.1 0.61 10.5 0.0 2.6 2 0 0 2 2 2 1 Miro-like protein AAA_5 PF07728.9 gi|336251885|ref|YP_004585853.1| - 0.0017 18.1 0.7 1.5 8.5 0.2 2.7 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) NB-ARC PF00931.17 gi|336251885|ref|YP_004585853.1| - 0.0018 17.2 0.0 0.098 11.4 0.0 2.2 2 0 0 2 2 2 1 NB-ARC domain T2SE PF00437.15 gi|336251885|ref|YP_004585853.1| - 0.0044 15.9 0.0 0.51 9.1 0.0 2.3 2 0 0 2 2 2 1 Type II/IV secretion system protein UPF0079 PF02367.12 gi|336251885|ref|YP_004585853.1| - 0.0045 16.5 0.2 0.29 10.7 0.1 2.3 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 AAA PF00004.24 gi|336251885|ref|YP_004585853.1| - 0.0087 16.2 0.2 0.78 9.9 0.0 2.9 3 0 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) PRK PF00485.13 gi|336251885|ref|YP_004585853.1| - 0.011 15.3 0.3 2.1 7.8 0.0 2.3 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family Zeta_toxin PF06414.7 gi|336251885|ref|YP_004585853.1| - 0.016 14.3 0.0 1.5 7.9 0.0 2.5 2 0 0 2 2 2 0 Zeta toxin AAA_18 PF13238.1 gi|336251885|ref|YP_004585853.1| - 0.016 15.4 0.1 1.3 9.3 0.0 3.0 3 0 0 3 3 3 0 AAA domain Mg_chelatase PF01078.16 gi|336251885|ref|YP_004585853.1| - 0.02 14.0 0.0 4.5 6.3 0.0 2.7 3 0 0 3 3 2 0 Magnesium chelatase, subunit ChlI FtsK_SpoIIIE PF01580.13 gi|336251885|ref|YP_004585853.1| - 0.027 13.9 0.0 0.78 9.1 0.0 2.3 2 0 0 2 2 2 0 FtsK/SpoIIIE family AAA_24 PF13479.1 gi|336251885|ref|YP_004585853.1| - 0.032 13.7 0.3 0.6 9.6 0.1 2.5 3 0 0 3 3 2 0 AAA domain MMR_HSR1 PF01926.18 gi|336251885|ref|YP_004585853.1| - 0.038 13.9 0.0 4.2 7.3 0.0 2.6 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_30 PF13604.1 gi|336251885|ref|YP_004585853.1| - 0.039 13.5 0.0 11 5.5 0.0 2.4 2 0 0 2 2 2 0 AAA domain Sigma54_activ_2 PF14532.1 gi|336251885|ref|YP_004585853.1| - 0.041 13.9 0.1 17 5.4 0.0 2.9 3 0 0 3 3 3 0 Sigma-54 interaction domain Arch_ATPase PF01637.13 gi|336251885|ref|YP_004585853.1| - 0.044 13.4 0.1 3.4 7.3 0.0 2.5 3 0 0 3 3 2 0 Archaeal ATPase MobB PF03205.9 gi|336251885|ref|YP_004585853.1| - 0.11 12.1 3.0 7.3 6.2 0.0 2.4 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B PduV-EutP PF10662.4 gi|336251885|ref|YP_004585853.1| - 0.14 11.6 0.4 0.36 10.3 0.1 1.8 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Septin PF00735.13 gi|336251885|ref|YP_004585853.1| - 0.17 10.8 0.0 1.9 7.3 0.0 2.1 2 0 0 2 2 2 0 Septin SbcCD_C PF13558.1 gi|336251885|ref|YP_004585853.1| - 0.18 11.7 7.0 2.6 8.0 0.3 3.8 3 2 0 3 3 2 0 Putative exonuclease SbcCD, C subunit DUF87 PF01935.12 gi|336251885|ref|YP_004585853.1| - 0.19 11.5 0.2 0.51 10.1 0.0 1.8 2 0 0 2 2 1 0 Domain of unknown function DUF87 AAA_17 PF13207.1 gi|336251885|ref|YP_004585853.1| - 0.22 12.3 5.8 9.9 7.0 0.1 3.1 2 1 0 2 2 2 0 AAA domain PEPCK_ATP PF01293.15 gi|336251885|ref|YP_004585853.1| - 0.23 9.9 0.4 1.9 6.9 0.1 2.0 2 0 0 2 2 2 0 Phosphoenolpyruvate carboxykinase ABC_ATPase PF09818.4 gi|336251885|ref|YP_004585853.1| - 0.35 9.4 1.6 1.9 6.9 0.0 2.4 3 0 0 3 3 3 0 Predicted ATPase of the ABC class Hpr_kinase_C PF07475.7 gi|336251885|ref|YP_004585853.1| - 0.96 8.7 3.0 1.8 7.8 0.3 2.2 2 0 0 2 2 2 0 HPr Serine kinase C-terminal domain HXXEE PF13787.1 gi|336251886|ref|YP_004585854.1| - 0.018 15.4 0.3 0.019 15.3 0.2 1.0 1 0 0 1 1 1 0 Protein of unknown function with HXXEE motif Colicin PF01024.14 gi|336251886|ref|YP_004585854.1| - 0.019 14.5 2.9 0.019 14.5 2.0 1.1 1 0 0 1 1 1 0 Colicin pore forming domain DUF2628 PF10947.3 gi|336251886|ref|YP_004585854.1| - 0.036 13.8 0.1 0.039 13.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2628) DUF2518 PF10726.4 gi|336251886|ref|YP_004585854.1| - 0.039 13.5 2.0 0.045 13.2 1.4 1.2 1 0 0 1 1 1 0 Protein of function (DUF2518) FA_desaturase PF00487.19 gi|336251886|ref|YP_004585854.1| - 0.14 11.5 0.3 0.15 11.4 0.2 1.0 1 0 0 1 1 1 0 Fatty acid desaturase 2TM PF13239.1 gi|336251886|ref|YP_004585854.1| - 0.15 12.1 4.9 0.19 11.7 3.4 1.2 1 0 0 1 1 1 0 2TM domain DUF417 PF04224.7 gi|336251886|ref|YP_004585854.1| - 0.19 11.0 2.4 0.2 10.9 1.7 1.1 1 0 0 1 1 1 0 Protein of unknown function, DUF417 GerA PF03323.8 gi|336251886|ref|YP_004585854.1| - 0.2 9.7 1.4 0.24 9.4 0.9 1.1 1 0 0 1 1 1 0 Bacillus/Clostridium GerA spore germination protein SpecificRecomb PF10136.4 gi|336251886|ref|YP_004585854.1| - 1.4 6.8 5.6 1.7 6.6 3.9 1.0 1 0 0 1 1 1 0 Site-specific recombinase DUF2244 PF10003.4 gi|336251886|ref|YP_004585854.1| - 1.8 7.8 4.4 2.3 7.6 3.1 1.1 1 0 0 1 1 1 0 Integral membrane protein (DUF2244) DUF2892 PF11127.3 gi|336251886|ref|YP_004585854.1| - 1.9 8.3 10.8 2.7 7.8 7.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2892) ATP1G1_PLM_MAT8 PF02038.11 gi|336251886|ref|YP_004585854.1| - 9.9 5.2 9.4 6 5.9 1.1 2.2 1 1 1 2 2 2 0 ATP1G1/PLM/MAT8 family FG-GAP PF01839.18 gi|336251887|ref|YP_004585855.1| - 8.1e-15 54.0 11.9 0.00056 19.5 0.2 5.7 4 1 1 5 5 5 4 FG-GAP repeat VCBS PF13517.1 gi|336251887|ref|YP_004585855.1| - 4.1e-07 30.2 15.0 0.14 12.5 0.3 5.2 5 0 0 5 5 5 3 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella TcdB_toxin_midN PF12256.3 gi|336251887|ref|YP_004585855.1| - 0.00027 20.4 4.0 0.85 9.0 0.1 3.3 3 0 0 3 3 3 3 Insecticide toxin TcdB middle/N-terminal region EF-hand_5 PF13202.1 gi|336251887|ref|YP_004585855.1| - 0.34 10.3 7.2 24 4.4 0.4 3.8 3 0 0 3 3 3 0 EF hand CarboxypepD_reg PF13620.1 gi|336251888|ref|YP_004585856.1| - 7.8e-06 25.8 0.1 1.7e-05 24.8 0.0 1.6 1 0 0 1 1 1 1 Carboxypeptidase regulatory-like domain PEGA PF08308.6 gi|336251888|ref|YP_004585856.1| - 3.9e-05 23.3 0.1 8e-05 22.3 0.0 1.5 1 0 0 1 1 1 1 PEGA domain YtkA PF13115.1 gi|336251888|ref|YP_004585856.1| - 0.0072 16.6 2.1 0.14 12.4 0.2 2.2 2 0 0 2 2 2 1 YtkA-like Big_1 PF02369.11 gi|336251888|ref|YP_004585856.1| - 0.015 15.1 0.5 0.061 13.2 0.3 1.9 1 1 0 1 1 1 0 Bacterial Ig-like domain (group 1) FlgD_ig PF13860.1 gi|336251888|ref|YP_004585856.1| - 0.033 13.9 1.3 0.13 12.0 0.6 2.3 1 1 1 2 2 2 0 FlgD Ig-like domain Cadherin-like PF12733.2 gi|336251888|ref|YP_004585856.1| - 1 9.6 7.6 4.6 7.5 0.6 2.2 1 1 1 2 2 2 0 Cadherin-like beta sandwich domain Glyco_hydro_4 PF02056.11 gi|336251889|ref|YP_004585857.1| - 9.1e-49 165.2 0.0 1.4e-48 164.6 0.0 1.3 1 0 0 1 1 1 1 Family 4 glycosyl hydrolase Glyco_hydro_4C PF11975.3 gi|336251889|ref|YP_004585857.1| - 1.8e-34 119.5 0.0 2.4e-34 119.1 0.0 1.2 1 0 0 1 1 1 1 Family 4 glycosyl hydrolase C-terminal domain AP_endonuc_2 PF01261.19 gi|336251890|ref|YP_004585858.1| - 3e-35 121.4 0.6 5e-35 120.7 0.4 1.3 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel PEP_mutase PF13714.1 gi|336251890|ref|YP_004585858.1| - 0.017 14.3 0.1 0.031 13.5 0.1 1.5 1 1 0 1 1 1 0 Phosphoenolpyruvate phosphomutase GFO_IDH_MocA PF01408.17 gi|336251891|ref|YP_004585859.1| - 1.1e-19 71.1 0.2 1.9e-19 70.3 0.1 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold FAA_hydrolase PF01557.13 gi|336251892|ref|YP_004585860.1| - 9e-69 231.2 0.1 1.1e-68 230.9 0.1 1.1 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family DUF2437 PF10370.4 gi|336251892|ref|YP_004585860.1| - 0.051 13.9 0.0 0.14 12.5 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF2437) Amidohydro_2 PF04909.9 gi|336251893|ref|YP_004585861.1| - 6.2e-23 81.7 9.9 8.1e-23 81.3 6.9 1.1 1 0 0 1 1 1 1 Amidohydrolase Peptidase_M19 PF01244.16 gi|336251893|ref|YP_004585861.1| - 0.09 11.6 0.0 0.15 11.0 0.0 1.4 1 0 0 1 1 1 0 Membrane dipeptidase (Peptidase family M19) ADH_N PF08240.7 gi|336251894|ref|YP_004585862.1| - 1e-31 108.8 1.4 1e-31 108.8 1.0 1.9 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|336251894|ref|YP_004585862.1| - 3e-17 62.3 0.2 4.8e-17 61.7 0.2 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|336251894|ref|YP_004585862.1| - 2.7e-07 31.5 0.0 5.3e-07 30.5 0.0 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Gp_dh_N PF00044.19 gi|336251894|ref|YP_004585862.1| - 0.092 12.7 0.1 0.31 11.0 0.0 1.9 1 1 1 2 2 2 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain MR_MLE_C PF13378.1 gi|336251895|ref|YP_004585863.1| - 3.3e-26 91.4 0.1 9.6e-26 89.9 0.0 1.8 2 0 0 2 2 2 1 Enolase C-terminal domain-like MR_MLE_N PF02746.11 gi|336251895|ref|YP_004585863.1| - 2.4e-19 69.4 0.2 4.3e-19 68.6 0.2 1.4 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MR_MLE PF01188.16 gi|336251895|ref|YP_004585863.1| - 9.6e-18 64.4 1.2 3.7e-17 62.5 0.3 2.5 3 0 0 3 3 3 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain PNRC PF15365.1 gi|336251895|ref|YP_004585863.1| - 0.032 14.2 0.1 0.069 13.1 0.1 1.6 1 0 0 1 1 1 0 Proline-rich nuclear receptor coactivator Bac_luciferase PF00296.15 gi|336251896|ref|YP_004585864.1| - 2.1e-67 227.4 0.4 2.5e-67 227.1 0.3 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase SNF2_assoc PF08455.5 gi|336251896|ref|YP_004585864.1| - 0.18 10.3 0.0 0.24 9.9 0.0 1.1 1 0 0 1 1 1 0 Bacterial SNF2 helicase associated adh_short PF00106.20 gi|336251897|ref|YP_004585865.1| - 1.1e-34 119.7 3.0 1.4e-34 119.3 2.1 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|336251897|ref|YP_004585865.1| - 1.8e-32 113.0 0.1 2.2e-32 112.7 0.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|336251897|ref|YP_004585865.1| - 1.9e-14 53.7 0.9 2.8e-14 53.2 0.6 1.3 1 1 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|336251897|ref|YP_004585865.1| - 2.5e-05 23.8 0.1 3.6e-05 23.3 0.1 1.4 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Eno-Rase_NADH_b PF12242.3 gi|336251897|ref|YP_004585865.1| - 0.0019 17.9 0.2 0.0046 16.7 0.2 1.6 1 0 0 1 1 1 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase 3Beta_HSD PF01073.14 gi|336251897|ref|YP_004585865.1| - 0.0066 15.1 0.1 0.0079 14.9 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family 2-Hacid_dh_C PF02826.14 gi|336251897|ref|YP_004585865.1| - 0.024 13.7 0.0 0.039 13.0 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain THF_DHG_CYH_C PF02882.14 gi|336251897|ref|YP_004585865.1| - 0.09 11.8 0.0 0.17 10.9 0.0 1.4 1 0 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NAD_binding_10 PF13460.1 gi|336251897|ref|YP_004585865.1| - 0.14 12.1 4.8 0.3 11.0 3.3 1.6 1 1 0 1 1 1 0 NADH(P)-binding Glyco_hydro_43 PF04616.9 gi|336251898|ref|YP_004585866.1| - 2e-10 40.2 8.8 1.3e-09 37.5 2.7 2.4 1 1 1 2 2 2 2 Glycosyl hydrolases family 43 Glyco_hydro_43 PF04616.9 gi|336251899|ref|YP_004585867.1| - 2e-07 30.4 0.1 3e-06 26.5 0.1 2.0 1 1 2 3 3 3 2 Glycosyl hydrolases family 43 Glyco_hydro_32N PF00251.15 gi|336251899|ref|YP_004585867.1| - 0.00016 21.1 0.0 0.015 14.6 0.0 2.5 2 1 0 2 2 2 2 Glycosyl hydrolases family 32 N-terminal domain Pectate_lyase22 PF14583.1 gi|336251900|ref|YP_004585868.1| - 2.8e-34 118.2 0.4 9.7e-29 99.9 0.0 2.0 2 0 0 2 2 2 2 Oligogalacturonate lyase PD40 PF07676.7 gi|336251900|ref|YP_004585868.1| - 2.2e-07 30.3 6.6 0.0033 17.0 0.2 3.0 3 1 0 3 3 3 2 WD40-like Beta Propeller Repeat RicinB_lectin_2 PF14200.1 gi|336251901|ref|YP_004585869.1| - 3.4e-16 59.5 0.2 1.9e-14 53.9 0.1 2.9 1 1 1 2 2 2 2 Ricin-type beta-trefoil lectin domain-like Beta_helix PF13229.1 gi|336251901|ref|YP_004585869.1| - 2.2e-06 27.5 19.9 0.00018 21.3 13.1 2.5 1 1 1 2 2 2 2 Right handed beta helix region Ricin_B_lectin PF00652.17 gi|336251901|ref|YP_004585869.1| - 6.6e-05 22.9 0.0 0.0091 16.0 0.0 3.2 3 0 0 3 3 3 1 Ricin-type beta-trefoil lectin domain Glyco_hydro_28 PF00295.12 gi|336251902|ref|YP_004585870.1| - 3.2e-24 85.4 0.0 1.2e-18 67.1 0.0 2.3 2 0 0 2 2 2 2 Glycosyl hydrolases family 28 Pectate_lyase_3 PF12708.2 gi|336251902|ref|YP_004585870.1| - 6.8e-15 55.7 0.1 1.6e-13 51.2 0.0 3.0 1 1 1 2 2 2 1 Pectate lyase superfamily protein Beta_helix PF13229.1 gi|336251902|ref|YP_004585870.1| - 1.4e-10 41.1 2.2 2.5e-09 37.0 0.4 3.3 2 1 0 3 3 3 1 Right handed beta helix region NosD PF05048.8 gi|336251902|ref|YP_004585870.1| - 6.9e-05 22.1 0.0 0.0002 20.6 0.0 1.7 1 0 0 1 1 1 1 Periplasmic copper-binding protein (NosD) Pentapeptide_4 PF13599.1 gi|336251902|ref|YP_004585870.1| - 0.028 14.2 0.4 4 7.3 0.0 3.8 3 1 0 3 3 3 0 Pentapeptide repeats (9 copies) Adeno_E1B_55K PF01696.12 gi|336251902|ref|YP_004585870.1| - 0.051 12.0 0.2 0.09 11.2 0.1 1.4 1 0 0 1 1 1 0 Adenovirus EB1 55K protein / large t-antigen Bac_rhamnosid PF05592.6 gi|336251903|ref|YP_004585871.1| - 1.9e-70 237.5 0.0 2.3e-70 237.2 0.0 1.1 1 0 0 1 1 1 1 Bacterial alpha-L-rhamnosidase Bac_rhamnosid_N PF08531.5 gi|336251903|ref|YP_004585871.1| - 6.8e-27 94.0 0.1 1.5e-26 92.9 0.1 1.6 1 0 0 1 1 1 1 Alpha-L-rhamnosidase N-terminal domain DUF608 PF04685.8 gi|336251903|ref|YP_004585871.1| - 2.4e-05 23.2 0.0 4e-05 22.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF608 DUF3344 PF11824.3 gi|336251903|ref|YP_004585871.1| - 0.13 11.6 0.0 0.21 10.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3344) MCPsignal PF00015.16 gi|336251904|ref|YP_004585872.1| - 4.3e-47 160.4 31.0 4.3e-47 160.4 21.5 4.9 3 1 3 6 6 6 3 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.20 gi|336251904|ref|YP_004585872.1| - 7.8e-09 35.6 10.7 5.4e-07 29.7 1.4 7.2 8 1 1 9 9 8 2 HAMP domain Laminin_II PF06009.7 gi|336251904|ref|YP_004585872.1| - 9e-07 28.7 31.3 0.0018 18.0 0.3 5.5 2 2 2 5 5 5 4 Laminin Domain II Spectrin PF00435.16 gi|336251904|ref|YP_004585872.1| - 0.00049 20.3 16.0 0.76 10.0 0.5 5.2 3 2 2 5 5 5 2 Spectrin repeat DUF948 PF06103.6 gi|336251904|ref|YP_004585872.1| - 0.0024 17.7 0.5 0.0024 17.7 0.4 6.8 6 1 0 7 7 7 2 Bacterial protein of unknown function (DUF948) DUF4200 PF13863.1 gi|336251904|ref|YP_004585872.1| - 0.0058 16.5 0.4 0.0058 16.5 0.3 4.4 4 0 0 4 4 4 1 Domain of unknown function (DUF4200) GYD PF08734.6 gi|336251904|ref|YP_004585872.1| - 0.03 14.0 4.0 3.3 7.5 0.8 3.9 2 1 1 3 3 3 0 GYD domain NPV_P10 PF05531.7 gi|336251904|ref|YP_004585872.1| - 0.044 14.0 27.4 0.11 12.8 0.1 5.9 3 2 1 4 4 4 0 Nucleopolyhedrovirus P10 protein LPP PF04728.8 gi|336251904|ref|YP_004585872.1| - 0.057 13.2 0.2 0.057 13.2 0.1 5.9 5 1 1 6 6 5 0 Lipoprotein leucine-zipper BLOC1_2 PF10046.4 gi|336251904|ref|YP_004585872.1| - 0.21 11.7 29.2 1.7 8.8 0.1 6.8 4 2 2 6 6 6 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Spc7 PF08317.6 gi|336251904|ref|YP_004585872.1| - 0.21 10.2 23.7 0.2 10.2 0.5 3.7 2 2 1 3 3 3 0 Spc7 kinetochore protein Rootletin PF15035.1 gi|336251904|ref|YP_004585872.1| - 0.31 11.0 20.5 0.017 15.1 5.4 3.0 1 1 0 2 2 2 0 Ciliary rootlet component, centrosome cohesion Ran-binding PF05508.6 gi|336251904|ref|YP_004585872.1| - 0.33 9.8 15.2 0.39 9.5 1.7 3.5 3 1 2 5 5 5 0 RanGTP-binding protein SpoVR PF04293.8 gi|336251904|ref|YP_004585872.1| - 0.38 9.0 3.6 0.83 7.9 2.0 1.8 1 1 0 1 1 1 0 SpoVR like protein GAS PF13851.1 gi|336251904|ref|YP_004585872.1| - 0.89 8.7 15.5 2.7 7.1 0.0 4.6 2 2 1 5 5 5 0 Growth-arrest specific micro-tubule binding Fzo_mitofusin PF04799.8 gi|336251904|ref|YP_004585872.1| - 1.1 8.6 7.5 4 6.8 0.0 4.3 4 1 1 5 5 5 0 fzo-like conserved region CENP-F_leu_zip PF10473.4 gi|336251904|ref|YP_004585872.1| - 1.8 8.4 30.1 0.059 13.2 3.7 4.4 2 2 1 3 3 3 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF972 PF06156.8 gi|336251904|ref|YP_004585872.1| - 2.2 8.6 19.7 5.9 7.2 0.7 5.4 2 2 3 5 5 5 0 Protein of unknown function (DUF972) Reo_sigmaC PF04582.7 gi|336251904|ref|YP_004585872.1| - 5 6.2 29.6 0.027 13.6 3.5 4.2 1 1 1 3 3 3 0 Reovirus sigma C capsid protein Baculo_PEP_C PF04513.7 gi|336251904|ref|YP_004585872.1| - 7.7 6.3 20.9 1.5 8.6 1.0 5.0 2 2 3 5 5 5 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF2264 PF10022.4 gi|336251905|ref|YP_004585873.1| - 2.2e-119 398.3 0.1 3e-119 397.8 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2264) DUF1083 PF06452.6 gi|336251906|ref|YP_004585874.1| - 1.7e-08 34.5 0.1 1.3e-07 31.6 0.1 2.2 1 1 0 1 1 1 1 Domain of unknown function (DUF1083) DUF718 PF05336.8 gi|336251907|ref|YP_004585875.1| - 1.5e-13 50.4 0.1 1.7e-13 50.3 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF718) DUF1654 PF07867.6 gi|336251907|ref|YP_004585875.1| - 0.25 10.7 1.8 0.44 9.9 1.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1654) Glyco_hydro_2_C PF02836.12 gi|336251908|ref|YP_004585876.1| - 2.9e-106 354.7 0.0 4.4e-106 354.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolases family 2, TIM barrel domain Bgal_small_N PF02929.12 gi|336251908|ref|YP_004585876.1| - 8e-74 248.1 0.0 1.3e-73 247.4 0.0 1.3 1 0 0 1 1 1 1 Beta galactosidase small chain Glyco_hydro_2_N PF02837.13 gi|336251908|ref|YP_004585876.1| - 1.6e-55 187.2 0.7 3.7e-55 186.0 0.5 1.7 1 0 0 1 1 1 1 Glycosyl hydrolases family 2, sugar binding domain Glyco_hydro_2 PF00703.16 gi|336251908|ref|YP_004585876.1| - 2.8e-21 76.0 0.2 1e-20 74.1 0.1 2.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 2 Fn3-like PF14310.1 gi|336251908|ref|YP_004585876.1| - 1.6e-05 24.7 0.2 0.065 13.1 0.0 4.6 4 1 1 5 5 5 1 Fibronectin type III-like domain Bac_rhamnosid_N PF08531.5 gi|336251908|ref|YP_004585876.1| - 0.035 13.6 0.1 0.23 10.9 0.0 2.4 2 1 0 2 2 2 0 Alpha-L-rhamnosidase N-terminal domain PHP PF02811.14 gi|336251909|ref|YP_004585877.1| - 0.017 14.9 0.0 0.038 13.7 0.0 1.5 1 1 0 1 1 1 0 PHP domain Inositol_P PF00459.20 gi|336251910|ref|YP_004585878.1| - 2.2e-48 164.9 0.0 2.4e-48 164.7 0.0 1.0 1 0 0 1 1 1 1 Inositol monophosphatase family Inositol_P PF00459.20 gi|336251911|ref|YP_004585879.1| - 7.6e-63 212.3 0.0 9.4e-63 212.0 0.0 1.0 1 0 0 1 1 1 1 Inositol monophosphatase family FBPase PF00316.15 gi|336251911|ref|YP_004585879.1| - 0.023 13.5 0.0 0.056 12.2 0.0 1.6 2 0 0 2 2 2 0 Fructose-1-6-bisphosphatase CbiQ PF02361.11 gi|336251912|ref|YP_004585880.1| - 1.1e-07 31.6 14.0 2.5e-07 30.4 9.7 1.6 1 1 0 1 1 1 1 Cobalt transport protein DUF21 PF01595.15 gi|336251912|ref|YP_004585880.1| - 0.29 10.4 5.4 1.4 8.1 2.8 2.2 2 1 0 2 2 2 0 Domain of unknown function DUF21 ABC_tran PF00005.22 gi|336251913|ref|YP_004585881.1| - 2.9e-52 176.5 0.0 3.4e-26 92.1 0.0 2.3 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|336251913|ref|YP_004585881.1| - 2.6e-18 67.0 5.4 0.00047 20.1 0.0 4.2 2 2 1 4 4 4 4 AAA domain SMC_N PF02463.14 gi|336251913|ref|YP_004585881.1| - 2.1e-12 46.7 0.7 0.0049 16.1 0.0 4.1 3 1 0 3 3 3 3 RecF/RecN/SMC N terminal domain AAA_13 PF13166.1 gi|336251913|ref|YP_004585881.1| - 5.2e-10 38.4 0.0 0.015 13.7 0.0 3.1 3 0 0 3 3 3 3 AAA domain AAA_29 PF13555.1 gi|336251913|ref|YP_004585881.1| - 1.8e-08 33.7 0.0 0.0062 16.0 0.0 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|336251913|ref|YP_004585881.1| - 1.1e-07 31.3 0.0 1.1 8.2 0.0 4.0 4 0 0 4 4 4 3 AAA ATPase domain AAA_23 PF13476.1 gi|336251913|ref|YP_004585881.1| - 2.3e-07 31.3 0.0 0.013 15.8 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_28 PF13521.1 gi|336251913|ref|YP_004585881.1| - 3e-06 27.2 1.2 0.19 11.6 1.1 3.5 2 1 0 2 2 2 2 AAA domain AAA_25 PF13481.1 gi|336251913|ref|YP_004585881.1| - 7.2e-06 25.5 0.2 0.16 11.3 0.0 3.4 2 1 1 3 3 3 2 AAA domain Miro PF08477.8 gi|336251913|ref|YP_004585881.1| - 1.2e-05 25.7 0.0 0.009 16.5 0.0 2.7 2 0 0 2 2 2 1 Miro-like protein AAA_22 PF13401.1 gi|336251913|ref|YP_004585881.1| - 2e-05 24.7 0.2 0.23 11.6 0.4 3.3 2 1 0 2 2 2 1 AAA domain DUF3584 PF12128.3 gi|336251913|ref|YP_004585881.1| - 3.7e-05 21.3 0.1 0.0062 13.9 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF3584) AAA_18 PF13238.1 gi|336251913|ref|YP_004585881.1| - 0.0001 22.5 0.2 0.78 10.0 0.0 3.2 2 1 0 2 2 2 2 AAA domain AAA_17 PF13207.1 gi|336251913|ref|YP_004585881.1| - 0.0003 21.6 7.2 0.099 13.4 0.5 3.4 2 2 0 2 2 2 2 AAA domain MobB PF03205.9 gi|336251913|ref|YP_004585881.1| - 0.00031 20.4 0.7 0.9 9.2 0.1 3.1 3 1 0 3 3 2 2 Molybdopterin guanine dinucleotide synthesis protein B FtsK_SpoIIIE PF01580.13 gi|336251913|ref|YP_004585881.1| - 0.00038 19.9 0.0 0.39 10.1 0.0 2.5 2 0 0 2 2 2 1 FtsK/SpoIIIE family MMR_HSR1 PF01926.18 gi|336251913|ref|YP_004585881.1| - 0.00062 19.7 0.5 0.024 14.6 0.1 3.1 3 1 0 3 3 3 1 50S ribosome-binding GTPase AAA_16 PF13191.1 gi|336251913|ref|YP_004585881.1| - 0.00086 19.3 7.0 0.49 10.3 1.8 3.3 2 2 0 2 2 2 2 AAA ATPase domain NACHT PF05729.7 gi|336251913|ref|YP_004585881.1| - 0.00087 18.9 1.2 0.79 9.3 0.0 2.3 2 0 0 2 2 2 2 NACHT domain DUF258 PF03193.11 gi|336251913|ref|YP_004585881.1| - 0.0015 17.7 0.0 0.11 11.7 0.0 2.3 2 0 0 2 2 2 1 Protein of unknown function, DUF258 AAA_14 PF13173.1 gi|336251913|ref|YP_004585881.1| - 0.0022 17.9 0.0 2.9 7.8 0.0 2.5 2 0 0 2 2 2 2 AAA domain PduV-EutP PF10662.4 gi|336251913|ref|YP_004585881.1| - 0.0022 17.4 0.0 1.3 8.5 0.0 2.5 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation AAA_10 PF12846.2 gi|336251913|ref|YP_004585881.1| - 0.0026 17.2 0.8 2.5 7.4 0.0 2.7 2 1 0 2 2 2 2 AAA-like domain AAA_30 PF13604.1 gi|336251913|ref|YP_004585881.1| - 0.0028 17.2 0.0 2 7.9 0.0 2.7 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|336251913|ref|YP_004585881.1| - 0.0038 16.9 0.1 0.44 10.3 0.0 2.7 2 0 0 2 2 2 1 Part of AAA domain AAA_33 PF13671.1 gi|336251913|ref|YP_004585881.1| - 0.004 17.0 0.0 1.2 9.0 0.0 2.6 2 0 0 2 2 2 1 AAA domain KdpD PF02702.12 gi|336251913|ref|YP_004585881.1| - 0.0055 15.8 0.1 0.017 14.2 0.1 1.8 1 0 0 1 1 1 1 Osmosensitive K+ channel His kinase sensor domain KaiC PF06745.8 gi|336251913|ref|YP_004585881.1| - 0.0061 15.7 0.0 0.14 11.2 0.0 2.7 3 0 0 3 3 3 1 KaiC AAA_24 PF13479.1 gi|336251913|ref|YP_004585881.1| - 0.0068 16.0 0.0 0.3 10.6 0.0 2.4 2 0 0 2 2 2 1 AAA domain NTPase_1 PF03266.10 gi|336251913|ref|YP_004585881.1| - 0.0074 16.0 0.1 3 7.5 0.0 3.1 3 0 0 3 3 3 1 NTPase G-alpha PF00503.15 gi|336251913|ref|YP_004585881.1| - 0.0085 14.8 0.0 0.83 8.2 0.0 2.1 2 0 0 2 2 2 1 G-protein alpha subunit AAA PF00004.24 gi|336251913|ref|YP_004585881.1| - 0.0099 16.0 0.2 3.9 7.6 0.0 3.4 3 2 1 4 4 3 0 ATPase family associated with various cellular activities (AAA) NB-ARC PF00931.17 gi|336251913|ref|YP_004585881.1| - 0.013 14.3 0.0 1.3 7.7 0.0 2.2 2 0 0 2 2 2 0 NB-ARC domain Zeta_toxin PF06414.7 gi|336251913|ref|YP_004585881.1| - 0.014 14.5 0.0 0.47 9.5 0.0 2.5 2 0 0 2 2 2 0 Zeta toxin Mg_chelatase PF01078.16 gi|336251913|ref|YP_004585881.1| - 0.021 13.9 0.0 1.4 8.0 0.0 2.4 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI UPF0079 PF02367.12 gi|336251913|ref|YP_004585881.1| - 0.023 14.3 0.1 4.5 6.9 0.0 2.4 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 SRP54 PF00448.17 gi|336251913|ref|YP_004585881.1| - 0.025 14.0 0.1 6.2 6.2 0.0 2.4 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain T2SE PF00437.15 gi|336251913|ref|YP_004585881.1| - 0.033 13.0 0.2 2.1 7.1 0.0 3.0 3 0 0 3 3 3 0 Type II/IV secretion system protein DUF87 PF01935.12 gi|336251913|ref|YP_004585881.1| - 0.033 13.9 0.0 9.6 5.9 0.0 2.8 3 0 0 3 3 2 0 Domain of unknown function DUF87 ATP_bind_1 PF03029.12 gi|336251913|ref|YP_004585881.1| - 0.037 13.5 0.6 0.86 9.0 0.1 2.5 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein cobW PF02492.14 gi|336251913|ref|YP_004585881.1| - 0.056 12.8 1.3 2.9 7.2 0.0 2.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Pox_A32 PF04665.7 gi|336251913|ref|YP_004585881.1| - 0.062 12.5 0.0 2.6 7.2 0.0 2.3 2 0 0 2 2 2 0 Poxvirus A32 protein RNA_helicase PF00910.17 gi|336251913|ref|YP_004585881.1| - 0.073 13.2 0.0 17 5.6 0.0 2.4 2 0 0 2 2 2 0 RNA helicase IstB_IS21 PF01695.12 gi|336251913|ref|YP_004585881.1| - 0.076 12.4 0.0 19 4.5 0.0 3.1 3 0 0 3 3 3 0 IstB-like ATP binding protein SbcCD_C PF13558.1 gi|336251913|ref|YP_004585881.1| - 0.13 12.2 0.0 17 5.3 0.0 2.9 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit RAMP PF04901.8 gi|336251914|ref|YP_004585882.1| - 0.31 10.8 1.3 1.8 8.3 0.1 2.2 2 0 0 2 2 2 0 Receptor activity modifying family Dicty_REP PF05086.7 gi|336251915|ref|YP_004585883.1| - 1.3 6.6 7.0 1.2 6.8 4.9 1.0 1 0 0 1 1 1 0 Dictyostelium (Slime Mold) REP protein DUF1675 PF07897.6 gi|336251915|ref|YP_004585883.1| - 1.7 8.4 14.4 2.2 8.0 10.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1675) Macoilin PF09726.4 gi|336251915|ref|YP_004585883.1| - 1.8 6.7 8.3 2 6.5 5.8 1.1 1 0 0 1 1 1 0 Transmembrane protein Peptidase_S64 PF08192.6 gi|336251915|ref|YP_004585883.1| - 2.3 6.4 6.4 2.3 6.4 4.5 1.0 1 0 0 1 1 1 0 Peptidase family S64 RAP1 PF07218.6 gi|336251915|ref|YP_004585883.1| - 2.7 5.9 6.9 3 5.8 4.8 1.0 1 0 0 1 1 1 0 Rhoptry-associated protein 1 (RAP-1) DUF605 PF04652.11 gi|336251915|ref|YP_004585883.1| - 3.8 6.8 16.9 4.2 6.6 11.7 1.1 1 0 0 1 1 1 0 Vta1 like SAPS PF04499.10 gi|336251915|ref|YP_004585883.1| - 4.8 5.6 8.5 4.9 5.6 5.9 1.1 1 0 0 1 1 1 0 SIT4 phosphatase-associated protein Lin-8 PF03353.10 gi|336251915|ref|YP_004585883.1| - 7.2 5.7 8.5 7.8 5.6 5.9 1.2 1 0 0 1 1 1 0 Ras-mediated vulval-induction antagonist CbiA PF01656.18 gi|336251916|ref|YP_004585884.1| - 2e-25 89.3 0.0 2.6e-25 89.0 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|336251916|ref|YP_004585884.1| - 7e-07 29.3 0.1 5.4e-06 26.4 0.1 2.1 1 1 0 1 1 1 1 AAA domain Fer4_NifH PF00142.13 gi|336251916|ref|YP_004585884.1| - 0.00045 19.4 0.0 0.0055 15.9 0.0 2.4 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family MipZ PF09140.6 gi|336251916|ref|YP_004585884.1| - 0.0012 17.9 0.1 0.1 11.6 0.0 2.2 2 0 0 2 2 2 1 ATPase MipZ ArsA_ATPase PF02374.10 gi|336251916|ref|YP_004585884.1| - 0.003 16.6 0.0 0.021 13.8 0.0 2.2 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_25 PF13481.1 gi|336251916|ref|YP_004585884.1| - 0.06 12.7 0.0 0.098 12.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain VirC1 PF07015.6 gi|336251916|ref|YP_004585884.1| - 0.13 11.2 0.0 0.29 10.1 0.0 1.5 1 0 0 1 1 1 0 VirC1 protein ABC_tran PF00005.22 gi|336251917|ref|YP_004585885.1| - 4.3e-51 172.8 0.0 8.4e-27 94.1 0.0 2.3 2 0 0 2 2 2 2 ABC transporter oligo_HPY PF08352.7 gi|336251917|ref|YP_004585885.1| - 2.9e-33 114.0 2.5 5.4e-17 61.8 0.1 2.6 2 0 0 2 2 2 2 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|336251917|ref|YP_004585885.1| - 5.3e-22 79.1 0.4 2.7e-09 37.4 0.1 4.0 2 2 1 3 3 3 2 AAA domain AAA_25 PF13481.1 gi|336251917|ref|YP_004585885.1| - 9.7e-08 31.6 0.0 0.0085 15.5 0.0 3.5 3 1 0 3 3 3 2 AAA domain SMC_N PF02463.14 gi|336251917|ref|YP_004585885.1| - 7.2e-07 28.6 0.9 0.049 12.8 0.0 4.2 3 1 0 3 3 3 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|336251917|ref|YP_004585885.1| - 1.2e-06 28.7 0.4 0.33 11.1 0.0 4.0 4 0 0 4 4 4 2 AAA domain AAA_29 PF13555.1 gi|336251917|ref|YP_004585885.1| - 2.8e-06 26.7 0.0 0.076 12.5 0.0 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|336251917|ref|YP_004585885.1| - 9.5e-06 25.7 0.1 0.086 12.8 0.0 2.6 2 1 0 2 2 2 2 AAA ATPase domain AAA_10 PF12846.2 gi|336251917|ref|YP_004585885.1| - 1.3e-05 24.8 0.0 0.19 11.1 0.0 3.2 3 1 0 3 3 3 2 AAA-like domain AAA_15 PF13175.1 gi|336251917|ref|YP_004585885.1| - 4.5e-05 22.6 0.0 0.0031 16.6 0.0 2.3 2 0 0 2 2 2 1 AAA ATPase domain NACHT PF05729.7 gi|336251917|ref|YP_004585885.1| - 8e-05 22.3 0.7 0.42 10.2 0.0 2.4 2 0 0 2 2 2 2 NACHT domain NB-ARC PF00931.17 gi|336251917|ref|YP_004585885.1| - 0.00016 20.5 0.0 0.015 14.1 0.0 2.4 2 0 0 2 2 2 1 NB-ARC domain IstB_IS21 PF01695.12 gi|336251917|ref|YP_004585885.1| - 0.00021 20.7 0.0 1 8.7 0.0 2.9 3 0 0 3 3 3 2 IstB-like ATP binding protein KaiC PF06745.8 gi|336251917|ref|YP_004585885.1| - 0.00023 20.3 0.1 0.49 9.4 0.0 3.0 3 0 0 3 3 3 2 KaiC AAA_17 PF13207.1 gi|336251917|ref|YP_004585885.1| - 0.00028 21.6 0.0 0.82 10.5 0.0 3.2 3 0 0 3 3 2 1 AAA domain AAA_23 PF13476.1 gi|336251917|ref|YP_004585885.1| - 0.00057 20.2 0.0 0.26 11.6 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA PF00004.24 gi|336251917|ref|YP_004585885.1| - 0.00059 20.0 0.0 0.58 10.3 0.0 3.0 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) DUF258 PF03193.11 gi|336251917|ref|YP_004585885.1| - 0.00084 18.5 0.0 0.18 11.0 0.0 2.3 2 0 0 2 2 2 1 Protein of unknown function, DUF258 AAA_33 PF13671.1 gi|336251917|ref|YP_004585885.1| - 0.0011 18.8 0.1 1.1 9.1 0.0 2.3 2 0 0 2 2 2 1 AAA domain RNA_helicase PF00910.17 gi|336251917|ref|YP_004585885.1| - 0.0019 18.3 0.0 1.4 9.0 0.0 2.5 2 0 0 2 2 2 1 RNA helicase MobB PF03205.9 gi|336251917|ref|YP_004585885.1| - 0.0022 17.6 0.1 1.7 8.3 0.0 2.3 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_18 PF13238.1 gi|336251917|ref|YP_004585885.1| - 0.0027 18.0 0.0 0.37 11.1 0.0 2.7 3 0 0 3 3 2 1 AAA domain FtsK_SpoIIIE PF01580.13 gi|336251917|ref|YP_004585885.1| - 0.0042 16.5 0.0 0.05 13.0 0.0 2.1 2 0 0 2 2 2 1 FtsK/SpoIIIE family PhoH PF02562.11 gi|336251917|ref|YP_004585885.1| - 0.0068 15.6 0.0 1.5 8.0 0.0 2.4 2 0 0 2 2 2 1 PhoH-like protein AAA_5 PF07728.9 gi|336251917|ref|YP_004585885.1| - 0.0083 15.8 0.2 5.4 6.7 0.1 2.7 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Miro PF08477.8 gi|336251917|ref|YP_004585885.1| - 0.0092 16.4 0.0 1.4 9.4 0.0 2.6 2 0 0 2 2 2 1 Miro-like protein DUF87 PF01935.12 gi|336251917|ref|YP_004585885.1| - 0.013 15.3 0.0 0.087 12.6 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function DUF87 ArgK PF03308.11 gi|336251917|ref|YP_004585885.1| - 0.018 13.8 0.0 0.38 9.4 0.0 2.1 2 0 0 2 2 2 0 ArgK protein UPF0079 PF02367.12 gi|336251917|ref|YP_004585885.1| - 0.019 14.5 0.3 0.85 9.2 0.1 2.3 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 Sigma54_activ_2 PF14532.1 gi|336251917|ref|YP_004585885.1| - 0.022 14.7 0.2 41 4.2 0.0 3.3 3 0 0 3 3 3 0 Sigma-54 interaction domain Sigma54_activat PF00158.21 gi|336251917|ref|YP_004585885.1| - 0.025 14.0 0.8 2.1 7.8 0.0 2.5 3 0 0 3 3 2 0 Sigma-54 interaction domain MMR_HSR1 PF01926.18 gi|336251917|ref|YP_004585885.1| - 0.026 14.4 0.0 11 6.0 0.0 2.4 2 0 0 2 2 2 0 50S ribosome-binding GTPase Zeta_toxin PF06414.7 gi|336251917|ref|YP_004585885.1| - 0.03 13.4 0.1 4.7 6.2 0.1 2.4 2 0 0 2 2 2 0 Zeta toxin AAA_30 PF13604.1 gi|336251917|ref|YP_004585885.1| - 0.054 13.0 0.1 3.2 7.2 0.0 2.3 2 0 0 2 2 2 0 AAA domain PRK PF00485.13 gi|336251917|ref|YP_004585885.1| - 0.058 12.9 0.9 8.6 5.8 0.0 2.3 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family T2SE PF00437.15 gi|336251917|ref|YP_004585885.1| - 0.069 12.0 0.1 4.2 6.1 0.0 2.6 3 0 0 3 3 3 0 Type II/IV secretion system protein ABC_ATPase PF09818.4 gi|336251917|ref|YP_004585885.1| - 0.085 11.4 0.0 4.2 5.8 0.0 2.8 3 0 0 3 3 3 0 Predicted ATPase of the ABC class AAA_19 PF13245.1 gi|336251917|ref|YP_004585885.1| - 0.19 11.4 0.4 5.9 6.7 0.1 2.5 2 0 0 2 2 2 0 Part of AAA domain Mg_chelatase PF01078.16 gi|336251917|ref|YP_004585885.1| - 0.2 10.8 0.0 5.6 6.0 0.0 2.4 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI PduV-EutP PF10662.4 gi|336251917|ref|YP_004585885.1| - 0.26 10.7 0.0 0.61 9.5 0.0 1.6 2 0 0 2 2 1 0 Ethanolamine utilisation - propanediol utilisation AAA_24 PF13479.1 gi|336251917|ref|YP_004585885.1| - 0.28 10.7 0.1 4.4 6.8 0.0 2.4 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.1 gi|336251917|ref|YP_004585885.1| - 0.28 11.1 4.2 17 5.3 0.5 3.4 2 2 0 2 2 2 0 Putative exonuclease SbcCD, C subunit Tetraspannin PF00335.15 gi|336251918|ref|YP_004585886.1| - 0.055 12.7 0.8 0.061 12.6 0.5 1.0 1 0 0 1 1 1 0 Tetraspanin family SdpI PF13630.1 gi|336251918|ref|YP_004585886.1| - 0.077 12.7 0.3 0.089 12.5 0.2 1.2 1 0 0 1 1 1 0 SdpI/YhfL protein family DUF4191 PF13829.1 gi|336251918|ref|YP_004585886.1| - 0.11 11.6 0.0 0.12 11.4 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) DUF4131 PF13567.1 gi|336251918|ref|YP_004585886.1| - 0.15 11.4 3.4 0.16 11.3 2.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF3377 PF11857.3 gi|336251918|ref|YP_004585886.1| - 0.22 11.1 0.9 0.35 10.5 0.6 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3377) ACR_tran PF00873.14 gi|336251918|ref|YP_004585886.1| - 0.35 8.2 1.4 0.36 8.1 1.0 1.0 1 0 0 1 1 1 0 AcrB/AcrD/AcrF family Oxidored_q2 PF00420.19 gi|336251918|ref|YP_004585886.1| - 0.56 9.8 5.6 1 9.0 3.9 1.5 1 1 0 1 1 1 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L BPD_transp_1 PF00528.17 gi|336251919|ref|YP_004585887.1| - 2.3e-21 76.1 14.3 2.3e-21 76.1 9.9 2.0 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component Transmemb_17 PF09799.4 gi|336251919|ref|YP_004585887.1| - 0.0015 18.8 1.2 0.0015 18.8 0.9 2.8 3 1 0 3 3 3 1 Predicted membrane protein BPD_transp_1 PF00528.17 gi|336251920|ref|YP_004585888.1| - 4.2e-34 117.6 10.8 7.8e-34 116.8 7.5 1.4 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.17 gi|336251921|ref|YP_004585889.1| - 2.1e-33 115.7 0.7 2.8e-33 115.2 0.5 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.4 gi|336251921|ref|YP_004585889.1| - 0.47 10.5 5.3 1.2 9.3 3.7 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Glyco_hyd_65N_2 PF14498.1 gi|336251922|ref|YP_004585890.1| - 3.2e-69 233.1 0.0 6.1e-69 232.2 0.0 1.5 1 0 0 1 1 1 1 Glycosyl hydrolase family 65, N-terminal domain Glyco_hydro_42 PF02449.10 gi|336251923|ref|YP_004585891.1| - 9.7e-149 495.5 3.7 3.1e-148 493.8 2.0 1.9 2 0 0 2 2 2 1 Beta-galactosidase Glyco_hydro_42M PF08532.5 gi|336251923|ref|YP_004585891.1| - 7.4e-62 208.1 0.1 1.1e-61 207.6 0.0 1.3 1 0 0 1 1 1 1 Beta-galactosidase trimerisation domain Glyco_hydro_14 PF01373.12 gi|336251923|ref|YP_004585891.1| - 1.2e-06 27.5 0.1 1.3e-05 24.1 0.0 2.0 2 0 0 2 2 2 1 Glycosyl hydrolase family 14 Glyco_hydro_35 PF01301.14 gi|336251923|ref|YP_004585891.1| - 0.00018 20.9 0.0 0.00032 20.1 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolases family 35 Cellulase PF00150.13 gi|336251923|ref|YP_004585891.1| - 0.00032 19.9 0.0 0.0012 18.0 0.0 1.8 2 0 0 2 2 2 1 Cellulase (glycosyl hydrolase family 5) Glyco_hydro_42C PF08533.5 gi|336251923|ref|YP_004585891.1| - 0.00069 19.0 0.0 0.0018 17.7 0.0 1.7 1 0 0 1 1 1 1 Beta-galactosidase C-terminal domain PriCT_1 PF08708.6 gi|336251923|ref|YP_004585891.1| - 0.084 12.7 0.0 0.24 11.2 0.0 1.8 1 0 0 1 1 1 0 Primase C terminal 1 (PriCT-1) SfsA PF03749.8 gi|336251925|ref|YP_004585893.1| - 1.5e-57 194.5 0.0 1.6e-57 194.4 0.0 1.0 1 0 0 1 1 1 1 Sugar fermentation stimulation protein HAD_2 PF13419.1 gi|336251925|ref|YP_004585893.1| - 0.018 15.2 0.2 0.076 13.2 0.2 1.8 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|336251925|ref|YP_004585893.1| - 0.02 15.2 0.0 0.026 14.9 0.0 1.1 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase PMSR PF01625.16 gi|336251926|ref|YP_004585894.1| - 5.2e-35 120.6 0.1 6.7e-35 120.2 0.0 1.1 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase Asparaginase PF00710.15 gi|336251927|ref|YP_004585895.1| - 2.8e-76 256.4 0.0 3.1e-76 256.2 0.0 1.0 1 0 0 1 1 1 1 Asparaginase Peripla_BP_4 PF13407.1 gi|336251927|ref|YP_004585895.1| - 6.7e-07 28.9 0.7 0.021 14.1 0.1 2.2 2 0 0 2 2 2 2 Periplasmic binding protein domain Ldh_2 PF02615.9 gi|336251927|ref|YP_004585895.1| - 0.029 13.1 0.0 0.044 12.5 0.0 1.2 1 0 0 1 1 1 0 Malate/L-lactate dehydrogenase zf-ribbon_3 PF13248.1 gi|336251929|ref|YP_004585897.1| - 0.016 14.3 0.1 0.028 13.6 0.1 1.5 1 0 0 1 1 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|336251929|ref|YP_004585897.1| - 0.049 13.5 0.6 0.13 12.1 0.3 1.8 2 0 0 2 2 2 0 Zinc ribbon domain DUF1936 PF09151.5 gi|336251929|ref|YP_004585897.1| - 0.063 12.7 0.1 0.11 12.0 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1936) DZR PF12773.2 gi|336251930|ref|YP_004585898.1| - 7.2e-05 22.5 0.3 8.3e-05 22.3 0.2 1.1 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|336251930|ref|YP_004585898.1| - 0.00042 19.7 0.7 0.00057 19.2 0.5 1.2 1 0 0 1 1 1 1 zinc-ribbon domain NRDD PF13597.1 gi|336251930|ref|YP_004585898.1| - 0.001 17.2 0.1 0.0011 17.0 0.1 1.0 1 0 0 1 1 1 1 Anaerobic ribonucleoside-triphosphate reductase HypA PF01155.14 gi|336251930|ref|YP_004585898.1| - 0.0013 18.3 0.6 0.0015 18.2 0.4 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family Zn_Tnp_IS1595 PF12760.2 gi|336251930|ref|YP_004585898.1| - 0.0015 18.3 0.2 0.99 9.2 0.0 2.1 2 0 0 2 2 2 2 Transposase zinc-ribbon domain Prok-RING_1 PF14446.1 gi|336251930|ref|YP_004585898.1| - 0.0031 17.2 2.3 0.0039 16.9 1.6 1.1 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 zf-ribbon_3 PF13248.1 gi|336251930|ref|YP_004585898.1| - 0.0032 16.6 1.6 0.0061 15.7 1.2 1.4 1 1 0 1 1 1 1 zinc-ribbon domain Ogr_Delta PF04606.7 gi|336251930|ref|YP_004585898.1| - 0.0034 17.0 0.4 0.37 10.5 0.1 2.1 2 0 0 2 2 2 1 Ogr/Delta-like zinc finger DUF1272 PF06906.6 gi|336251930|ref|YP_004585898.1| - 0.012 15.4 0.7 0.013 15.2 0.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) CpXC PF14353.1 gi|336251930|ref|YP_004585898.1| - 0.014 15.3 0.9 0.95 9.4 0.1 2.0 1 1 1 2 2 2 0 CpXC protein Zn-ribbon_8 PF09723.5 gi|336251930|ref|YP_004585898.1| - 0.014 15.3 6.8 0.065 13.1 4.7 1.9 1 1 0 1 1 1 0 Zinc ribbon domain UPF0547 PF10571.4 gi|336251930|ref|YP_004585898.1| - 0.02 14.5 1.6 0.034 13.8 1.1 1.4 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 DNA_ligase_ZBD PF03119.11 gi|336251930|ref|YP_004585898.1| - 0.022 14.4 0.3 0.022 14.4 0.2 1.7 2 0 0 2 2 1 0 NAD-dependent DNA ligase C4 zinc finger domain zf-UBR PF02207.15 gi|336251930|ref|YP_004585898.1| - 0.024 14.3 0.3 0.028 14.1 0.2 1.1 1 0 0 1 1 1 0 Putative zinc finger in N-recognin (UBR box) PolC_DP2 PF03833.8 gi|336251930|ref|YP_004585898.1| - 0.027 12.1 0.1 0.029 12.0 0.1 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 zinc-ribbons_6 PF07191.7 gi|336251930|ref|YP_004585898.1| - 0.032 14.0 0.3 0.038 13.7 0.2 1.1 1 0 0 1 1 1 0 zinc-ribbons YhfH PF14149.1 gi|336251930|ref|YP_004585898.1| - 0.032 14.0 2.3 2 8.2 0.1 2.1 1 1 1 2 2 2 0 YhfH-like protein Nudix_N_2 PF14803.1 gi|336251930|ref|YP_004585898.1| - 0.037 13.7 1.0 2.9 7.6 0.1 2.2 2 0 0 2 2 2 0 Nudix N-terminal OrfB_Zn_ribbon PF07282.6 gi|336251930|ref|YP_004585898.1| - 0.04 13.5 3.6 0.16 11.6 0.8 2.0 1 1 1 2 2 2 0 Putative transposase DNA-binding domain zf-RING_3 PF14369.1 gi|336251930|ref|YP_004585898.1| - 0.042 13.8 4.4 0.077 13.0 3.0 1.5 1 1 0 1 1 1 0 zinc-finger NOB1_Zn_bind PF08772.6 gi|336251930|ref|YP_004585898.1| - 0.049 13.4 0.3 0.056 13.2 0.2 1.1 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like DNA_RNApol_7kD PF03604.8 gi|336251930|ref|YP_004585898.1| - 0.05 13.0 3.1 0.15 11.5 2.1 1.7 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit TFIIS_C PF01096.13 gi|336251930|ref|YP_004585898.1| - 0.06 12.9 0.9 3.2 7.4 0.0 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) DUF3797 PF12677.2 gi|336251930|ref|YP_004585898.1| - 0.085 12.4 0.8 1.4 8.5 0.0 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) zf-C4_Topoisom PF01396.14 gi|336251930|ref|YP_004585898.1| - 0.11 12.0 0.5 0.32 10.5 0.0 1.8 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger DUF2387 PF09526.5 gi|336251930|ref|YP_004585898.1| - 0.11 12.4 2.6 2 8.4 2.0 1.9 1 1 1 2 2 2 0 Probable metal-binding protein (DUF2387) zf-ISL3 PF14690.1 gi|336251930|ref|YP_004585898.1| - 0.11 12.4 2.4 1 9.4 0.1 2.1 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 RecR PF02132.10 gi|336251930|ref|YP_004585898.1| - 0.13 11.7 2.4 0.28 10.6 1.7 1.7 1 1 0 1 1 1 0 RecR protein zf-HIT PF04438.11 gi|336251930|ref|YP_004585898.1| - 0.15 11.7 2.5 0.95 9.1 0.1 2.1 2 0 0 2 2 2 0 HIT zinc finger Rubredoxin PF00301.15 gi|336251930|ref|YP_004585898.1| - 0.19 11.6 4.7 7.3 6.5 3.2 2.1 1 1 0 1 1 1 0 Rubredoxin TF_Zn_Ribbon PF08271.7 gi|336251930|ref|YP_004585898.1| - 0.25 10.6 5.0 0.55 9.6 0.3 2.1 1 1 2 3 3 3 0 TFIIB zinc-binding zf-Mss51 PF13824.1 gi|336251930|ref|YP_004585898.1| - 0.37 10.6 3.2 1.3 8.9 0.1 2.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-FPG_IleRS PF06827.9 gi|336251930|ref|YP_004585898.1| - 0.62 9.7 3.8 4.8 6.9 3.0 1.9 1 1 1 2 2 2 0 Zinc finger found in FPG and IleRS zf-IS66 PF13005.2 gi|336251930|ref|YP_004585898.1| - 0.66 10.0 4.9 3.5 7.6 0.2 2.2 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 zf-C2H2_6 PF13912.1 gi|336251930|ref|YP_004585898.1| - 0.96 9.4 3.3 1.7 8.6 0.2 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger RNA_POL_M_15KD PF02150.11 gi|336251930|ref|YP_004585898.1| - 0.96 9.1 5.1 4.4 7.0 0.4 2.2 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit zf-C2H2_3 PF13878.1 gi|336251930|ref|YP_004585898.1| - 5.6 6.6 5.4 3.4 7.3 0.4 2.1 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO Flavodoxin_5 PF12724.2 gi|336251931|ref|YP_004585899.1| - 2e-35 121.8 0.0 2.5e-35 121.5 0.0 1.1 1 0 0 1 1 1 1 Flavodoxin domain Flavodoxin_1 PF00258.20 gi|336251931|ref|YP_004585899.1| - 3.2e-05 23.9 0.1 8.3e-05 22.6 0.0 1.9 1 1 1 2 2 2 1 Flavodoxin Flavodoxin_3 PF12641.2 gi|336251931|ref|YP_004585899.1| - 0.00053 19.4 0.0 0.0012 18.2 0.0 1.6 1 1 1 2 2 2 1 Flavodoxin domain B12-binding PF02310.14 gi|336251931|ref|YP_004585899.1| - 0.017 14.9 0.1 0.083 12.7 0.0 2.0 2 0 0 2 2 2 0 B12 binding domain DUF3834 PF12916.2 gi|336251931|ref|YP_004585899.1| - 0.028 13.4 0.0 0.039 12.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3834) TrmB PF01978.14 gi|336251932|ref|YP_004585900.1| - 1.7e-12 46.8 0.0 3.2e-12 45.9 0.0 1.5 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|336251932|ref|YP_004585900.1| - 4.3e-07 29.4 0.0 8.2e-07 28.5 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.7 gi|336251932|ref|YP_004585900.1| - 2.4e-06 27.0 0.0 1.1e-05 25.0 0.0 1.9 2 0 0 2 2 2 1 HTH domain MarR_2 PF12802.2 gi|336251932|ref|YP_004585900.1| - 1.9e-05 24.2 0.1 3.7e-05 23.2 0.0 1.5 2 0 0 2 2 1 1 MarR family MarR PF01047.17 gi|336251932|ref|YP_004585900.1| - 4.2e-05 23.1 0.0 0.00016 21.2 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.1 gi|336251932|ref|YP_004585900.1| - 5.3e-05 22.5 0.0 8.6e-05 21.8 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_38 PF13936.1 gi|336251932|ref|YP_004585900.1| - 5.5e-05 22.6 0.0 0.00041 19.8 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain Penicillinase_R PF03965.11 gi|336251932|ref|YP_004585900.1| - 8.5e-05 22.6 0.0 0.00011 22.2 0.0 1.2 1 0 0 1 1 1 1 Penicillinase repressor HTH_20 PF12840.2 gi|336251932|ref|YP_004585900.1| - 0.00041 20.0 0.0 0.0008 19.1 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|336251932|ref|YP_004585900.1| - 0.0012 19.1 0.0 0.0055 17.0 0.0 1.9 1 1 1 2 2 2 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.14 gi|336251932|ref|YP_004585900.1| - 0.0077 16.1 0.0 0.068 13.1 0.0 2.2 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_5 PF01022.15 gi|336251932|ref|YP_004585900.1| - 0.012 15.2 0.0 0.019 14.6 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.1 gi|336251932|ref|YP_004585900.1| - 0.016 14.9 0.0 0.044 13.5 0.0 1.9 1 1 1 2 2 2 0 Crp-like helix-turn-helix domain HTH_23 PF13384.1 gi|336251932|ref|YP_004585900.1| - 0.019 14.5 0.0 0.046 13.3 0.0 1.6 2 0 0 2 2 2 0 Homeodomain-like domain GntR PF00392.16 gi|336251932|ref|YP_004585900.1| - 0.022 14.1 0.0 0.099 12.0 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_12 PF08461.5 gi|336251932|ref|YP_004585900.1| - 0.055 13.1 0.0 0.23 11.1 0.0 2.0 2 0 0 2 2 2 0 Ribonuclease R winged-helix domain RepB PF07506.6 gi|336251932|ref|YP_004585900.1| - 0.079 12.8 0.0 0.13 12.1 0.0 1.3 1 0 0 1 1 1 0 RepB plasmid partitioning protein Josephin PF02099.12 gi|336251932|ref|YP_004585900.1| - 0.1 12.2 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 Josephin Dimerisation PF08100.6 gi|336251932|ref|YP_004585900.1| - 0.11 12.3 0.0 0.37 10.6 0.0 1.8 2 0 0 2 2 2 0 Dimerisation domain Sigma54_DBD PF04552.8 gi|336251932|ref|YP_004585900.1| - 0.12 11.8 0.0 0.16 11.4 0.0 1.2 1 0 0 1 1 1 0 Sigma-54, DNA binding domain Sigma70_r4_2 PF08281.7 gi|336251932|ref|YP_004585900.1| - 0.14 11.5 0.1 1.1 8.7 0.0 2.4 2 1 0 2 2 2 0 Sigma-70, region 4 Sulf_transp PF04143.9 gi|336251933|ref|YP_004585901.1| - 2e-09 37.3 6.2 2e-09 37.3 4.3 2.7 3 0 0 3 3 3 2 Sulphur transport Tim17 PF02466.14 gi|336251933|ref|YP_004585901.1| - 1 9.4 6.9 1.4 8.9 4.3 1.7 1 1 0 1 1 1 0 Tim17/Tim22/Tim23/Pmp24 family DUF4341 PF14241.1 gi|336251934|ref|YP_004585902.1| - 5.5e-17 61.2 11.2 1.3e-16 60.0 3.2 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF4341) Sulf_transp PF04143.9 gi|336251934|ref|YP_004585902.1| - 1.1e-11 44.5 18.8 4.2e-11 42.6 5.5 3.0 3 0 0 3 3 3 2 Sulphur transport Lactamase_B PF00753.22 gi|336251935|ref|YP_004585903.1| - 2.8e-27 95.6 9.0 4.2e-27 95.0 6.3 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Rhodanese PF00581.15 gi|336251935|ref|YP_004585903.1| - 2.1e-11 44.1 0.0 3.4e-11 43.4 0.0 1.4 1 0 0 1 1 1 1 Rhodanese-like domain Lactamase_B_3 PF13483.1 gi|336251935|ref|YP_004585903.1| - 0.02 14.5 0.1 0.042 13.5 0.0 1.5 1 0 0 1 1 1 0 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|336251935|ref|YP_004585903.1| - 0.038 13.5 0.6 0.11 12.0 0.5 1.6 1 1 0 1 1 1 0 Beta-lactamase superfamily domain PH_8 PF15409.1 gi|336251935|ref|YP_004585903.1| - 0.08 13.0 0.0 0.15 12.1 0.0 1.4 1 0 0 1 1 1 0 Pleckstrin homology domain TusA PF01206.12 gi|336251936|ref|YP_004585904.1| - 1.5e-20 72.5 0.0 1.7e-20 72.3 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.4 gi|336251936|ref|YP_004585904.1| - 0.05 13.1 0.1 0.094 12.2 0.0 1.5 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2249) DrsE_2 PF13686.1 gi|336251937|ref|YP_004585905.1| - 2e-49 167.1 0.0 2.5e-49 166.8 0.0 1.1 1 0 0 1 1 1 1 DsrE/DsrF/DrsH-like family DrsE PF02635.10 gi|336251937|ref|YP_004585905.1| - 9.2e-07 28.9 0.0 2.7e-05 24.2 0.0 2.3 1 1 0 1 1 1 1 DsrE/DsrF-like family Packaging_FI PF14000.1 gi|336251937|ref|YP_004585905.1| - 0.054 13.6 0.0 0.098 12.8 0.0 1.4 1 0 0 1 1 1 0 DNA packaging protein FI DUF4140 PF13600.1 gi|336251937|ref|YP_004585905.1| - 0.15 12.5 0.7 0.3 11.5 0.5 1.5 1 0 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) DUF2270 PF10028.4 gi|336251938|ref|YP_004585906.1| - 4.2e-63 212.1 6.4 4.9e-63 211.9 4.4 1.0 1 0 0 1 1 1 1 Predicted integral membrane protein (DUF2270) COX15-CtaA PF02628.10 gi|336251938|ref|YP_004585906.1| - 0.12 11.1 4.8 0.07 11.9 0.2 1.9 1 1 0 2 2 2 0 Cytochrome oxidase assembly protein FA_desaturase PF00487.19 gi|336251938|ref|YP_004585906.1| - 6.8 6.0 11.3 5.1 6.4 2.1 2.1 1 1 1 2 2 2 0 Fatty acid desaturase Abhydrolase_6 PF12697.2 gi|336251939|ref|YP_004585907.1| - 4e-41 141.3 0.3 4.6e-41 141.1 0.2 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|336251939|ref|YP_004585907.1| - 1.1e-21 77.5 0.0 2.2e-21 76.4 0.0 1.5 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|336251939|ref|YP_004585907.1| - 8.8e-15 54.7 0.0 3.4e-14 52.8 0.0 1.8 1 1 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.3 gi|336251939|ref|YP_004585907.1| - 0.0017 18.1 0.0 0.0046 16.7 0.0 1.7 1 0 0 1 1 1 1 Putative lysophospholipase Thioesterase PF00975.15 gi|336251939|ref|YP_004585907.1| - 0.0077 16.4 0.0 0.013 15.7 0.0 1.4 1 0 0 1 1 1 1 Thioesterase domain LCAT PF02450.10 gi|336251939|ref|YP_004585907.1| - 0.13 11.2 0.0 0.17 10.8 0.0 1.1 1 0 0 1 1 1 0 Lecithin:cholesterol acyltransferase PGAP1 PF07819.8 gi|336251939|ref|YP_004585907.1| - 0.17 11.4 0.0 1.2 8.6 0.0 2.0 1 1 0 1 1 1 0 PGAP1-like protein HATPase_c PF02518.21 gi|336251940|ref|YP_004585908.1| - 2.2e-30 104.6 0.0 4.6e-30 103.5 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|336251940|ref|YP_004585908.1| - 1.6e-29 102.3 0.6 1.1e-12 48.2 0.0 3.6 3 0 0 3 3 3 3 PAS domain PAS_4 PF08448.5 gi|336251940|ref|YP_004585908.1| - 5.7e-26 90.7 5.7 2.4e-12 46.8 0.0 4.0 3 1 0 3 3 3 3 PAS fold PAS_3 PF08447.6 gi|336251940|ref|YP_004585908.1| - 3.2e-21 75.2 3.5 8.5e-18 64.2 0.6 3.2 3 0 0 3 3 3 2 PAS fold PAS PF00989.19 gi|336251940|ref|YP_004585908.1| - 5e-15 55.2 0.7 9.9e-07 28.5 0.0 3.7 3 0 0 3 3 3 3 PAS fold PAS_8 PF13188.1 gi|336251940|ref|YP_004585908.1| - 7.4e-14 51.0 0.1 2.8e-08 33.3 0.0 4.0 3 0 0 3 3 3 2 PAS domain HisKA PF00512.20 gi|336251940|ref|YP_004585908.1| - 2.2e-12 46.7 0.6 1.7e-11 43.9 0.1 2.8 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain GAF PF01590.21 gi|336251940|ref|YP_004585908.1| - 8.4e-11 42.2 0.4 1.9e-10 41.0 0.3 1.7 1 0 0 1 1 1 1 GAF domain GAF_2 PF13185.1 gi|336251940|ref|YP_004585908.1| - 7.5e-10 39.4 0.5 2e-09 38.1 0.4 1.8 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.1 gi|336251940|ref|YP_004585908.1| - 1.5e-09 37.9 0.4 7.7e-09 35.7 0.1 2.2 2 0 0 2 2 2 1 GAF domain HATPase_c_5 PF14501.1 gi|336251940|ref|YP_004585908.1| - 5e-06 26.1 0.0 2e-05 24.2 0.0 2.0 2 0 0 2 2 2 1 GHKL domain HATPase_c_2 PF13581.1 gi|336251940|ref|YP_004585908.1| - 0.00072 19.3 0.1 0.0018 18.0 0.0 1.8 1 1 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.1 gi|336251940|ref|YP_004585908.1| - 0.036 13.7 0.0 0.079 12.6 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_11 PF14598.1 gi|336251940|ref|YP_004585908.1| - 0.12 12.3 0.0 1.6 8.7 0.0 2.7 3 0 0 3 3 3 0 PAS domain Beta_helix PF13229.1 gi|336251941|ref|YP_004585909.1| - 0.061 13.0 8.5 0.14 11.9 5.8 1.7 1 1 0 1 1 1 0 Right handed beta helix region TAT_signal PF10518.4 gi|336251941|ref|YP_004585909.1| - 6.4 7.0 9.4 0.4 10.8 2.4 2.2 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence Glyco_hydro_4 PF02056.11 gi|336251942|ref|YP_004585910.1| - 4.5e-56 189.0 0.0 6e-56 188.6 0.0 1.2 1 0 0 1 1 1 1 Family 4 glycosyl hydrolase Glyco_hydro_4C PF11975.3 gi|336251942|ref|YP_004585910.1| - 6.4e-37 127.5 0.0 1.8e-36 126.1 0.0 1.7 1 1 0 1 1 1 1 Family 4 glycosyl hydrolase C-terminal domain NAD_Gly3P_dh_N PF01210.18 gi|336251942|ref|YP_004585910.1| - 0.047 13.4 0.0 0.095 12.4 0.0 1.5 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ADH_N PF08240.7 gi|336251943|ref|YP_004585911.1| - 5e-31 106.6 0.5 1.1e-30 105.5 0.3 1.6 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|336251943|ref|YP_004585911.1| - 2.4e-20 72.3 0.0 8e-20 70.7 0.0 1.9 2 0 0 2 2 2 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|336251943|ref|YP_004585911.1| - 5.7e-08 33.7 0.0 1.5e-07 32.3 0.0 1.7 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Alpha-L-AF_C PF06964.7 gi|336251944|ref|YP_004585912.1| - 3.1e-31 108.5 0.4 4.4e-31 108.0 0.3 1.2 1 0 0 1 1 1 1 Alpha-L-arabinofuranosidase C-terminus SBP_bac_5 PF00496.17 gi|336251945|ref|YP_004585913.1| - 9.8e-36 123.3 1.8 1.5e-35 122.7 1.2 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle BPD_transp_1 PF00528.17 gi|336251946|ref|YP_004585914.1| - 3.2e-37 127.8 11.4 3.2e-37 127.8 7.9 1.9 3 0 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|336251947|ref|YP_004585915.1| - 1e-22 80.5 13.3 1e-22 80.5 9.2 2.0 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|336251948|ref|YP_004585916.1| - 6.5e-23 81.5 0.0 1.1e-22 80.8 0.0 1.4 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|336251948|ref|YP_004585916.1| - 1.8e-17 63.4 0.3 3.9e-17 62.3 0.2 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|336251948|ref|YP_004585916.1| - 3.2e-11 43.7 0.2 3.5e-09 37.0 0.3 2.2 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.14 gi|336251948|ref|YP_004585916.1| - 5.9e-05 22.3 1.0 0.00086 18.5 0.7 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_25 PF13481.1 gi|336251948|ref|YP_004585916.1| - 0.00017 21.0 0.0 0.0014 18.0 0.0 2.1 2 0 0 2 2 2 1 AAA domain ABC_ATPase PF09818.4 gi|336251948|ref|YP_004585916.1| - 0.00059 18.5 0.1 0.0032 16.1 0.1 2.0 2 1 0 2 2 2 1 Predicted ATPase of the ABC class AAA_22 PF13401.1 gi|336251948|ref|YP_004585916.1| - 0.0007 19.7 1.2 0.023 14.8 0.8 2.2 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|336251948|ref|YP_004585916.1| - 0.0043 16.1 0.1 0.015 14.3 0.1 1.7 2 0 0 2 2 2 1 AAA ATPase domain AAA_10 PF12846.2 gi|336251948|ref|YP_004585916.1| - 0.0054 16.1 0.1 0.023 14.1 0.0 1.7 1 1 1 2 2 2 1 AAA-like domain DUF87 PF01935.12 gi|336251948|ref|YP_004585916.1| - 0.013 15.3 0.1 0.029 14.1 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function DUF87 AAA_16 PF13191.1 gi|336251948|ref|YP_004585916.1| - 0.015 15.2 1.7 0.087 12.8 1.2 2.0 1 1 0 1 1 1 0 AAA ATPase domain FtsK_SpoIIIE PF01580.13 gi|336251948|ref|YP_004585916.1| - 0.02 14.3 0.0 0.041 13.3 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family ArgK PF03308.11 gi|336251948|ref|YP_004585916.1| - 0.022 13.5 0.0 0.041 12.6 0.0 1.4 1 0 0 1 1 1 0 ArgK protein AAA_29 PF13555.1 gi|336251948|ref|YP_004585916.1| - 0.033 13.7 0.1 0.063 12.8 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain IstB_IS21 PF01695.12 gi|336251948|ref|YP_004585916.1| - 0.077 12.4 0.0 0.29 10.5 0.0 1.8 2 0 0 2 2 2 0 IstB-like ATP binding protein NACHT PF05729.7 gi|336251948|ref|YP_004585916.1| - 0.089 12.4 0.0 0.16 11.5 0.0 1.4 1 0 0 1 1 1 0 NACHT domain ABC_tran PF00005.22 gi|336251949|ref|YP_004585917.1| - 1e-30 106.8 0.0 1.4e-30 106.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|336251949|ref|YP_004585917.1| - 2.5e-18 66.1 0.3 5.3e-18 65.1 0.2 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|336251949|ref|YP_004585917.1| - 4.7e-09 36.6 0.1 4.2e-06 26.9 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|336251949|ref|YP_004585917.1| - 0.002 18.2 0.3 0.17 12.0 0.0 2.2 2 0 0 2 2 2 1 AAA domain NB-ARC PF00931.17 gi|336251949|ref|YP_004585917.1| - 0.0095 14.8 0.0 0.014 14.2 0.0 1.2 1 0 0 1 1 1 1 NB-ARC domain KaiC PF06745.8 gi|336251949|ref|YP_004585917.1| - 0.012 14.6 0.0 0.022 13.8 0.0 1.3 1 0 0 1 1 1 0 KaiC AAA_10 PF12846.2 gi|336251949|ref|YP_004585917.1| - 0.016 14.6 0.2 2.1 7.7 0.0 2.1 1 1 1 2 2 2 0 AAA-like domain AAA_16 PF13191.1 gi|336251949|ref|YP_004585917.1| - 0.025 14.5 0.1 0.067 13.1 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain DUF258 PF03193.11 gi|336251949|ref|YP_004585917.1| - 0.036 13.2 0.0 0.064 12.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|336251949|ref|YP_004585917.1| - 0.051 13.1 0.1 0.093 12.2 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|336251949|ref|YP_004585917.1| - 0.13 11.6 0.1 0.23 10.8 0.0 1.4 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|336251949|ref|YP_004585917.1| - 0.13 11.9 0.3 0.23 11.1 0.2 1.4 1 0 0 1 1 1 0 NACHT domain UPF0079 PF02367.12 gi|336251949|ref|YP_004585917.1| - 0.13 11.8 0.0 0.22 11.1 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA PF00004.24 gi|336251949|ref|YP_004585917.1| - 0.16 12.1 0.0 0.31 11.2 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) PhoH PF02562.11 gi|336251949|ref|YP_004585917.1| - 0.19 10.9 0.1 0.32 10.2 0.0 1.3 1 0 0 1 1 1 0 PhoH-like protein SbcCD_C PF13558.1 gi|336251949|ref|YP_004585917.1| - 0.3 11.0 1.1 3.2 7.7 0.7 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Acyl_transf_3 PF01757.17 gi|336251950|ref|YP_004585918.1| - 0.13 11.0 2.7 0.14 10.9 1.9 1.0 1 0 0 1 1 1 0 Acyltransferase family DUF2648 PF10855.3 gi|336251950|ref|YP_004585918.1| - 4.8 6.7 5.4 10 5.6 0.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2648) Alpha-L-AF_C PF06964.7 gi|336251951|ref|YP_004585919.1| - 1.4e-12 47.7 0.0 2.3e-12 47.0 0.0 1.3 1 0 0 1 1 1 1 Alpha-L-arabinofuranosidase C-terminus DUF1680 PF07944.7 gi|336251952|ref|YP_004585920.1| - 1.2e-175 584.7 0.0 1.3e-175 584.6 0.0 1.0 1 0 0 1 1 1 1 Putative glycosyl hydrolase of unknown function (DUF1680) IclR PF01614.13 gi|336251953|ref|YP_004585921.1| - 5.1e-31 107.0 0.0 7.5e-31 106.5 0.0 1.2 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|336251953|ref|YP_004585921.1| - 5.7e-08 32.2 0.0 1.7e-07 30.7 0.0 1.9 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|336251953|ref|YP_004585921.1| - 0.00018 21.1 0.0 0.00041 19.9 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|336251953|ref|YP_004585921.1| - 0.00022 20.9 0.0 0.00052 19.7 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|336251953|ref|YP_004585921.1| - 0.00053 19.6 0.0 0.001 18.7 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_45 PF14947.1 gi|336251953|ref|YP_004585921.1| - 0.00098 18.8 0.0 0.0019 17.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_24 PF13412.1 gi|336251953|ref|YP_004585921.1| - 0.001 18.3 0.0 0.0018 17.5 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|336251953|ref|YP_004585921.1| - 0.0012 19.1 0.1 0.024 14.9 0.0 2.5 3 0 0 3 3 2 1 Winged helix DNA-binding domain HTH_11 PF08279.7 gi|336251953|ref|YP_004585921.1| - 0.0027 17.3 0.0 0.0076 15.8 0.0 1.8 1 0 0 1 1 1 1 HTH domain HTH_23 PF13384.1 gi|336251953|ref|YP_004585921.1| - 0.022 14.3 0.0 0.047 13.3 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain HTH_5 PF01022.15 gi|336251953|ref|YP_004585921.1| - 0.029 14.0 0.0 0.062 12.9 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_28 PF13518.1 gi|336251953|ref|YP_004585921.1| - 0.032 14.2 0.0 0.077 13.0 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain TetR_N PF00440.18 gi|336251953|ref|YP_004585921.1| - 0.13 11.9 0.0 0.47 10.1 0.0 1.9 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family Glyco_hydro_2_N PF02837.13 gi|336251954|ref|YP_004585922.1| - 2e-36 125.0 0.3 3.8e-36 124.1 0.2 1.5 1 0 0 1 1 1 1 Glycosyl hydrolases family 2, sugar binding domain Glyco_hydro_2 PF00703.16 gi|336251954|ref|YP_004585922.1| - 8.8e-15 55.1 1.3 2.3e-14 53.7 0.0 2.5 3 0 0 3 3 3 1 Glycosyl hydrolases family 2 Glyco_hydro_2_C PF02836.12 gi|336251954|ref|YP_004585922.1| - 4.7e-13 48.7 0.0 8.2e-13 47.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolases family 2, TIM barrel domain BetaGal_dom4_5 PF13364.1 gi|336251954|ref|YP_004585922.1| - 0.00032 20.9 0.2 0.00066 19.9 0.2 1.5 1 0 0 1 1 1 1 Beta-galactosidase jelly roll domain IclR PF01614.13 gi|336251955|ref|YP_004585923.1| - 1.8e-14 53.5 0.1 6.4e-07 29.1 0.0 2.7 3 0 0 3 3 3 2 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|336251955|ref|YP_004585923.1| - 6.7e-14 51.2 0.0 2e-13 49.7 0.0 1.8 2 0 0 2 2 2 1 IclR helix-turn-helix domain BNR_2 PF13088.1 gi|336251955|ref|YP_004585923.1| - 1.3e-11 44.2 2.1 4.5e-08 32.7 0.3 3.3 1 1 1 2 2 2 2 BNR repeat-like domain BNR PF02012.15 gi|336251955|ref|YP_004585923.1| - 3.6e-07 29.0 14.0 0.079 12.8 0.7 4.9 3 0 0 3 3 3 3 BNR/Asp-box repeat TrmB PF01978.14 gi|336251955|ref|YP_004585923.1| - 5.4e-05 22.8 0.0 0.00015 21.4 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|336251955|ref|YP_004585923.1| - 9e-05 22.0 0.0 0.00021 20.8 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|336251955|ref|YP_004585923.1| - 0.0001 21.5 0.0 0.0002 20.6 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|336251955|ref|YP_004585923.1| - 0.00011 21.8 0.2 0.00032 20.2 0.0 1.9 1 1 1 2 2 2 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.7 gi|336251955|ref|YP_004585923.1| - 0.004 16.7 0.0 0.0079 15.8 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_45 PF14947.1 gi|336251955|ref|YP_004585923.1| - 0.0061 16.3 0.0 0.013 15.2 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix MarR_2 PF12802.2 gi|336251955|ref|YP_004585923.1| - 0.015 14.9 0.0 0.033 13.8 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_7 PF02796.10 gi|336251955|ref|YP_004585923.1| - 0.021 14.6 0.1 0.047 13.5 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase Rrf2 PF02082.15 gi|336251955|ref|YP_004585923.1| - 0.028 14.5 0.0 0.052 13.6 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator Fe_dep_repress PF01325.14 gi|336251955|ref|YP_004585923.1| - 0.048 13.5 0.1 0.11 12.4 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain B-block_TFIIIC PF04182.7 gi|336251955|ref|YP_004585923.1| - 0.064 13.1 0.0 0.15 11.9 0.0 1.6 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_34 PF13601.1 gi|336251955|ref|YP_004585923.1| - 0.066 13.2 0.0 0.14 12.2 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_Mga PF08280.6 gi|336251955|ref|YP_004585923.1| - 0.16 11.7 0.0 0.3 10.8 0.0 1.3 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_36 PF13730.1 gi|336251955|ref|YP_004585923.1| - 0.19 11.8 0.0 0.49 10.5 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Alpha-L-AF_C PF06964.7 gi|336251956|ref|YP_004585924.1| - 0.00016 21.4 0.0 0.0011 18.7 0.0 2.1 1 1 0 1 1 1 1 Alpha-L-arabinofuranosidase C-terminus PAS_9 PF13426.1 gi|336251957|ref|YP_004585925.1| - 3.7e-80 265.0 6.1 2.3e-19 69.6 0.1 6.7 6 0 0 6 6 6 6 PAS domain PAS_4 PF08448.5 gi|336251957|ref|YP_004585925.1| - 2.7e-71 236.5 21.8 1.1e-14 54.3 0.1 6.6 6 0 0 6 6 6 6 PAS fold PAS PF00989.19 gi|336251957|ref|YP_004585925.1| - 3.1e-53 178.3 3.4 1e-11 44.6 0.0 7.9 6 2 0 6 6 6 6 PAS fold HATPase_c PF02518.21 gi|336251957|ref|YP_004585925.1| - 1.1e-31 108.7 0.0 3.7e-31 107.1 0.0 2.0 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|336251957|ref|YP_004585925.1| - 6.3e-28 95.6 1.7 1.8e-06 27.5 0.0 6.8 6 0 0 6 6 6 6 PAS domain PAS_3 PF08447.6 gi|336251957|ref|YP_004585925.1| - 8e-21 73.9 4.0 3e-06 27.2 0.0 7.2 7 0 0 7 7 7 3 PAS fold PAS_7 PF12860.2 gi|336251957|ref|YP_004585925.1| - 3.7e-15 55.9 2.9 0.13 12.2 0.0 8.4 7 2 0 7 7 7 4 PAS fold HisKA PF00512.20 gi|336251957|ref|YP_004585925.1| - 1.5e-10 40.8 0.1 1.5e-10 40.8 0.1 3.4 4 0 0 4 4 4 1 His Kinase A (phospho-acceptor) domain PAS_10 PF13596.1 gi|336251957|ref|YP_004585925.1| - 9.4e-07 29.0 0.1 0.066 13.4 0.0 4.3 4 1 0 4 4 4 2 PAS domain HATPase_c_2 PF13581.1 gi|336251957|ref|YP_004585925.1| - 7e-05 22.6 0.1 0.00022 20.9 0.1 2.0 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HTH_20 PF12840.2 gi|336251957|ref|YP_004585925.1| - 0.00018 21.2 0.0 0.00055 19.6 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HATPase_c_5 PF14501.1 gi|336251957|ref|YP_004585925.1| - 0.00036 20.1 0.0 0.00078 19.1 0.0 1.5 1 0 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.1 gi|336251957|ref|YP_004585925.1| - 0.012 15.2 0.0 0.03 13.9 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase TrmB PF01978.14 gi|336251957|ref|YP_004585925.1| - 0.016 14.9 0.0 0.047 13.4 0.0 1.8 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB SgrR_N PF12793.2 gi|336251957|ref|YP_004585925.1| - 0.017 15.1 0.0 0.048 13.6 0.0 1.7 1 0 0 1 1 1 0 Sugar transport-related sRNA regulator N-term FaeA PF04703.7 gi|336251957|ref|YP_004585925.1| - 0.15 12.2 0.0 0.41 10.8 0.0 1.7 1 0 0 1 1 1 0 FaeA-like protein Barstar PF01337.13 gi|336251958|ref|YP_004585926.1| - 0.092 12.5 0.0 0.2 11.5 0.0 1.5 1 0 0 1 1 1 0 Barstar (barnase inhibitor) DUF2070 PF09843.4 gi|336251960|ref|YP_004585928.1| - 1e-08 34.8 0.0 2.9e-08 33.4 0.0 1.8 1 1 0 1 1 1 1 Predicted membrane protein (DUF2070) Sulfatase PF00884.18 gi|336251961|ref|YP_004585929.1| - 5.4e-36 124.3 0.1 6.9e-36 123.9 0.0 1.1 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|336251961|ref|YP_004585929.1| - 1.3e-11 44.4 0.3 9.1e-06 25.2 0.1 2.3 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF1501 PF07394.7 gi|336251961|ref|YP_004585929.1| - 0.012 14.5 0.4 0.012 14.5 0.2 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1501) HAT PF02184.11 gi|336251961|ref|YP_004585929.1| - 0.015 15.0 0.0 0.044 13.5 0.0 1.8 2 0 0 2 2 2 0 HAT (Half-A-TPR) repeat Metalloenzyme PF01676.13 gi|336251961|ref|YP_004585929.1| - 0.11 11.8 0.0 0.19 11.0 0.0 1.3 1 0 0 1 1 1 0 Metalloenzyme superfamily GtrA PF04138.9 gi|336251962|ref|YP_004585930.1| - 1.7e-22 79.5 7.7 1.9e-22 79.3 5.3 1.0 1 0 0 1 1 1 1 GtrA-like protein SNARE_assoc PF09335.6 gi|336251963|ref|YP_004585931.1| - 2.2e-14 53.7 4.1 3.5e-14 53.0 2.8 1.4 1 1 0 1 1 1 1 SNARE associated Golgi protein HEPN PF05168.9 gi|336251964|ref|YP_004585932.1| - 0.13 12.1 1.1 0.48 10.3 0.8 1.8 1 1 0 1 1 1 0 HEPN domain NTP_transf_2 PF01909.18 gi|336251965|ref|YP_004585933.1| - 2.6e-10 40.4 0.4 4.6e-10 39.6 0.3 1.5 1 0 0 1 1 1 1 Nucleotidyltransferase domain HTH_11 PF08279.7 gi|336251965|ref|YP_004585933.1| - 7.9e-09 35.0 0.4 1.6e-08 34.0 0.0 1.6 2 0 0 2 2 2 1 HTH domain HTH_IclR PF09339.5 gi|336251965|ref|YP_004585933.1| - 0.00016 21.2 0.0 0.00029 20.3 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|336251965|ref|YP_004585933.1| - 0.00058 19.6 0.0 0.0011 18.6 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|336251965|ref|YP_004585933.1| - 0.0012 18.5 0.1 0.0035 17.0 0.0 1.8 3 0 0 3 3 3 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|336251965|ref|YP_004585933.1| - 0.0017 17.9 1.1 0.0028 17.2 0.0 1.9 2 0 0 2 2 2 1 MarR family GntR PF00392.16 gi|336251965|ref|YP_004585933.1| - 0.0032 16.8 0.1 0.0064 15.8 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family MarR PF01047.17 gi|336251965|ref|YP_004585933.1| - 0.016 14.9 0.0 0.037 13.7 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_41 PF14502.1 gi|336251965|ref|YP_004585933.1| - 0.022 14.3 0.1 0.064 12.8 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain DUF294 PF03445.8 gi|336251965|ref|YP_004585933.1| - 0.033 13.8 0.0 0.052 13.1 0.0 1.3 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 HTH_23 PF13384.1 gi|336251965|ref|YP_004585933.1| - 0.07 12.8 0.0 0.17 11.5 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain HTH_10 PF04967.7 gi|336251966|ref|YP_004585934.1| - 0.019 14.5 0.0 0.051 13.1 0.0 1.7 1 0 0 1 1 1 0 HTH DNA binding domain Oxidored_molyb PF00174.14 gi|336251967|ref|YP_004585935.1| - 1.7e-26 92.6 0.0 2.1e-26 92.3 0.0 1.0 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain DUF2249 PF10006.4 gi|336251968|ref|YP_004585936.1| - 1.3e-82 271.3 24.7 8.5e-27 92.5 0.5 4.1 4 0 0 4 4 4 4 Uncharacterized conserved protein (DUF2249) SBP_bac_5 PF00496.17 gi|336251970|ref|YP_004585938.1| - 1.5e-55 188.5 0.0 1.8e-55 188.2 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle AA_permease_2 PF13520.1 gi|336251971|ref|YP_004585939.1| - 1.7e-31 109.2 40.6 2.4e-31 108.7 28.1 1.2 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|336251971|ref|YP_004585939.1| - 1e-15 57.1 39.6 1.8e-15 56.2 27.4 1.3 1 1 0 1 1 1 1 Amino acid permease WBP-1 PF11669.3 gi|336251971|ref|YP_004585939.1| - 0.21 11.6 0.6 4.3 7.4 0.0 2.2 2 0 0 2 2 2 0 WW domain-binding protein 1 Ion_trans_2 PF07885.11 gi|336251972|ref|YP_004585940.1| - 4.9e-07 29.3 5.0 4.9e-07 29.3 3.4 1.9 2 0 0 2 2 2 1 Ion channel Form_Nir_trans PF01226.12 gi|336251973|ref|YP_004585941.1| - 5.4e-42 143.4 6.7 6.1e-42 143.2 4.6 1.0 1 0 0 1 1 1 1 Formate/nitrite transporter Chordopox_L2 PF05803.7 gi|336251973|ref|YP_004585941.1| - 0.16 11.6 0.0 0.29 10.7 0.0 1.4 1 0 0 1 1 1 0 Chordopoxvirus L2 protein Usp PF00582.21 gi|336251974|ref|YP_004585942.1| - 9.5e-32 110.1 2.6 1.1e-31 109.9 1.8 1.0 1 0 0 1 1 1 1 Universal stress protein family RHH_1 PF01402.16 gi|336251975|ref|YP_004585943.1| - 0.00068 19.4 0.1 0.00068 19.4 0.1 1.6 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family RHH_2 PF03693.9 gi|336251975|ref|YP_004585943.1| - 0.024 14.8 0.1 0.035 14.2 0.1 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0156) Secretin_N PF03958.12 gi|336251975|ref|YP_004585943.1| - 0.05 13.8 0.2 0.081 13.1 0.2 1.3 1 0 0 1 1 1 0 Bacterial type II/III secretion system short domain CLP_protease PF00574.18 gi|336251975|ref|YP_004585943.1| - 0.13 11.9 0.0 0.14 11.7 0.0 1.1 1 0 0 1 1 1 0 Clp protease zf-ribbon_3 PF13248.1 gi|336251976|ref|YP_004585944.1| - 0.017 14.2 0.2 0.033 13.4 0.1 1.4 1 0 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|336251976|ref|YP_004585944.1| - 0.018 14.5 0.2 0.032 13.7 0.2 1.4 1 0 0 1 1 1 0 zinc-ribbon domain zf-TFIIB PF13453.1 gi|336251976|ref|YP_004585944.1| - 0.22 10.7 0.8 0.7 9.1 0.2 2.0 2 0 0 2 2 2 0 Transcription factor zinc-finger Usp PF00582.21 gi|336251977|ref|YP_004585945.1| - 3.4e-63 212.0 9.4 1.3e-32 112.9 0.7 2.0 2 0 0 2 2 2 2 Universal stress protein family DUF21 PF01595.15 gi|336251978|ref|YP_004585946.1| - 1.8e-24 86.0 0.0 2.7e-24 85.4 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF21 CBS PF00571.23 gi|336251978|ref|YP_004585946.1| - 9.1e-14 50.9 0.1 1.2e-09 37.7 0.0 2.3 2 0 0 2 2 2 2 CBS domain PadR PF03551.9 gi|336251979|ref|YP_004585947.1| - 1.1e-16 60.3 1.4 1.4e-16 59.9 1.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.1 gi|336251979|ref|YP_004585947.1| - 0.00049 19.8 0.1 0.00069 19.3 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_27 PF13463.1 gi|336251979|ref|YP_004585947.1| - 0.00086 19.5 0.0 0.0011 19.2 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF1495 PF07381.6 gi|336251979|ref|YP_004585947.1| - 0.014 15.0 0.0 0.022 14.4 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) MarR_2 PF12802.2 gi|336251979|ref|YP_004585947.1| - 0.022 14.4 0.3 1.3 8.7 0.1 2.6 3 0 0 3 3 3 0 MarR family HTH_34 PF13601.1 gi|336251979|ref|YP_004585947.1| - 0.064 13.2 0.0 0.083 12.9 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF4364 PF14277.1 gi|336251979|ref|YP_004585947.1| - 0.085 12.4 0.0 0.11 12.1 0.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4364) TrmB PF01978.14 gi|336251979|ref|YP_004585947.1| - 0.09 12.4 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB CMD PF02627.15 gi|336251980|ref|YP_004585948.1| - 1.4e-12 47.2 0.0 2.5e-12 46.4 0.0 1.3 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family Peptidase_M16_C PF05193.16 gi|336251980|ref|YP_004585948.1| - 0.0056 16.3 0.0 0.083 12.5 0.0 2.0 1 1 1 2 2 2 1 Peptidase M16 inactive domain Thioredoxin_2 PF13098.1 gi|336251980|ref|YP_004585948.1| - 0.05 13.7 0.0 0.088 13.0 0.0 1.5 2 0 0 2 2 2 0 Thioredoxin-like domain Usp PF00582.21 gi|336251981|ref|YP_004585949.1| - 8.8e-33 113.4 0.5 1e-32 113.2 0.3 1.1 1 0 0 1 1 1 1 Universal stress protein family Usp PF00582.21 gi|336251982|ref|YP_004585950.1| - 3e-55 186.2 11.7 2.3e-31 108.8 1.7 2.1 2 0 0 2 2 2 2 Universal stress protein family Usp PF00582.21 gi|336251983|ref|YP_004585951.1| - 8.8e-29 100.4 2.9 9.9e-29 100.3 2.0 1.0 1 0 0 1 1 1 1 Universal stress protein family DUF2188 PF09954.4 gi|336251983|ref|YP_004585951.1| - 0.05 13.5 0.6 6.1 6.8 0.0 2.4 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2188) GARS_N PF02844.10 gi|336251983|ref|YP_004585951.1| - 0.052 14.0 0.1 0.23 11.9 0.0 2.0 1 1 0 1 1 1 0 Phosphoribosylglycinamide synthetase, N domain IF3_N PF05198.11 gi|336251983|ref|YP_004585951.1| - 0.084 12.8 0.1 7 6.6 0.0 2.4 2 1 0 2 2 2 0 Translation initiation factor IF-3, N-terminal domain ETF PF01012.16 gi|336251983|ref|YP_004585951.1| - 0.15 11.7 1.5 0.32 10.6 1.0 1.6 1 1 0 1 1 1 0 Electron transfer flavoprotein domain IclR PF01614.13 gi|336251984|ref|YP_004585952.1| - 5.1e-32 110.2 0.0 1e-30 106.0 0.0 2.3 3 0 0 3 3 3 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|336251984|ref|YP_004585952.1| - 2.4e-14 52.6 0.3 1.2e-13 50.4 0.1 2.1 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|336251984|ref|YP_004585952.1| - 5.3e-09 35.3 0.0 1.1e-08 34.3 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|336251984|ref|YP_004585952.1| - 4.7e-08 32.5 0.0 2.1e-07 30.4 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_5 PF01022.15 gi|336251984|ref|YP_004585952.1| - 8e-08 31.8 0.0 1.5e-07 30.9 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.7 gi|336251984|ref|YP_004585952.1| - 1.3e-05 24.7 0.0 6.3e-05 22.5 0.0 2.1 2 0 0 2 2 2 1 HTH domain HTH_20 PF12840.2 gi|336251984|ref|YP_004585952.1| - 1.4e-05 24.8 0.0 3.3e-05 23.5 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|336251984|ref|YP_004585952.1| - 3.7e-05 23.3 0.0 7.7e-05 22.3 0.0 1.5 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|336251984|ref|YP_004585952.1| - 9.2e-05 22.0 0.5 0.00026 20.6 0.2 1.9 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.1 gi|336251984|ref|YP_004585952.1| - 0.00015 21.5 0.1 0.00032 20.4 0.1 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_34 PF13601.1 gi|336251984|ref|YP_004585952.1| - 0.00054 19.9 0.1 0.001 19.0 0.1 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF742 PF05331.6 gi|336251984|ref|YP_004585952.1| - 0.0024 17.4 0.0 0.0066 16.0 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF742) FaeA PF04703.7 gi|336251984|ref|YP_004585952.1| - 0.0039 17.3 0.1 0.0093 16.1 0.1 1.6 1 0 0 1 1 1 1 FaeA-like protein HTH_AsnC-type PF13404.1 gi|336251984|ref|YP_004585952.1| - 0.0064 16.0 0.0 0.02 14.3 0.0 1.8 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain FeoC PF09012.5 gi|336251984|ref|YP_004585952.1| - 0.0091 15.6 0.0 0.016 14.9 0.0 1.5 1 0 0 1 1 1 1 FeoC like transcriptional regulator HTH_DeoR PF08220.7 gi|336251984|ref|YP_004585952.1| - 0.0095 15.4 0.0 0.02 14.4 0.0 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain GAF_2 PF13185.1 gi|336251984|ref|YP_004585952.1| - 0.011 16.1 0.2 0.021 15.2 0.0 1.6 2 1 0 2 2 1 0 GAF domain DUF1803 PF08820.5 gi|336251984|ref|YP_004585952.1| - 0.023 14.3 0.1 0.045 13.4 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1803) Fe_dep_repress PF01325.14 gi|336251984|ref|YP_004585952.1| - 0.033 14.1 0.3 0.071 13.0 0.2 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.1 gi|336251984|ref|YP_004585952.1| - 0.073 13.3 0.1 0.18 12.1 0.0 1.7 2 0 0 2 2 1 0 Winged helix DNA-binding domain HTH_Mga PF08280.6 gi|336251984|ref|YP_004585952.1| - 0.075 12.8 0.1 0.22 11.3 0.0 1.8 1 1 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_17 PF12728.2 gi|336251984|ref|YP_004585952.1| - 0.076 13.2 0.1 6 7.2 0.1 2.6 2 0 0 2 2 2 0 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|336251984|ref|YP_004585952.1| - 0.17 11.2 0.6 0.39 10.0 0.0 1.9 2 0 0 2 2 2 0 Sigma-70, region 4 IclR PF01614.13 gi|336251985|ref|YP_004585953.1| - 1.6e-27 95.7 0.0 3e-27 94.8 0.0 1.4 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|336251985|ref|YP_004585953.1| - 1.3e-13 50.2 0.5 2.1e-12 46.4 0.1 2.6 2 1 0 2 2 2 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|336251985|ref|YP_004585953.1| - 2.4e-09 36.8 0.4 6.9e-09 35.3 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain MarR PF01047.17 gi|336251985|ref|YP_004585953.1| - 3.1e-08 33.1 0.0 5.5e-08 32.3 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|336251985|ref|YP_004585953.1| - 1.1e-07 31.3 0.0 3.1e-07 29.9 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|336251985|ref|YP_004585953.1| - 2.4e-07 30.0 0.0 4.7e-07 29.0 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|336251985|ref|YP_004585953.1| - 2e-05 24.1 0.0 4.5e-05 23.0 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.7 gi|336251985|ref|YP_004585953.1| - 0.00016 21.2 0.1 0.00069 19.2 0.0 2.0 2 0 0 2 2 2 1 HTH domain HTH_27 PF13463.1 gi|336251985|ref|YP_004585953.1| - 0.00055 20.2 0.1 0.0015 18.7 0.0 1.8 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_40 PF14493.1 gi|336251985|ref|YP_004585953.1| - 0.0016 18.6 0.1 0.0045 17.1 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.14 gi|336251985|ref|YP_004585953.1| - 0.0028 17.3 0.0 0.0081 15.8 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_10 PF04967.7 gi|336251985|ref|YP_004585953.1| - 0.0037 16.8 0.2 0.012 15.2 0.1 1.9 2 0 0 2 2 2 1 HTH DNA binding domain HTH_23 PF13384.1 gi|336251985|ref|YP_004585953.1| - 0.007 15.9 0.0 0.027 14.1 0.0 1.9 2 0 0 2 2 2 1 Homeodomain-like domain HTH_38 PF13936.1 gi|336251985|ref|YP_004585953.1| - 0.0096 15.4 0.0 0.021 14.3 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain LexA_DNA_bind PF01726.11 gi|336251985|ref|YP_004585953.1| - 0.02 14.4 0.0 0.77 9.3 0.0 2.4 2 0 0 2 2 2 0 LexA DNA binding domain EAP30 PF04157.11 gi|336251985|ref|YP_004585953.1| - 0.028 13.5 0.0 0.047 12.8 0.0 1.3 1 0 0 1 1 1 0 EAP30/Vps36 family Sigma70_r4 PF04545.11 gi|336251985|ref|YP_004585953.1| - 0.038 13.3 0.0 0.23 10.8 0.0 2.1 2 0 0 2 2 2 0 Sigma-70, region 4 RPA_C PF08784.6 gi|336251985|ref|YP_004585953.1| - 0.043 14.2 0.0 0.11 12.9 0.0 1.6 1 0 0 1 1 1 0 Replication protein A C terminal HTH_DeoR PF08220.7 gi|336251985|ref|YP_004585953.1| - 0.056 12.9 0.0 0.056 12.9 0.0 1.6 2 0 0 2 2 1 0 DeoR-like helix-turn-helix domain HTH_34 PF13601.1 gi|336251985|ref|YP_004585953.1| - 0.086 12.8 0.0 0.23 11.5 0.0 1.6 2 0 0 2 2 2 0 Winged helix DNA-binding domain Aldedh PF00171.17 gi|336251986|ref|YP_004585954.1| - 4.3e-145 483.5 0.1 5e-145 483.3 0.1 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.9 gi|336251986|ref|YP_004585954.1| - 0.0008 18.2 0.0 0.0014 17.4 0.0 1.3 1 0 0 1 1 1 1 Acyl-CoA reductase (LuxC) MDMPI_N PF11716.3 gi|336251986|ref|YP_004585954.1| - 0.011 16.1 2.2 0.036 14.4 1.5 1.8 1 0 0 1 1 1 0 Mycothiol maleylpyruvate isomerase N-terminal domain OmdA PF13376.1 gi|336251986|ref|YP_004585954.1| - 0.077 12.6 0.4 0.18 11.4 0.3 1.5 1 0 0 1 1 1 0 Bacteriocin-protection, YdeI or OmpD-Associated SPOUT_MTase_2 PF14419.1 gi|336251986|ref|YP_004585954.1| - 0.098 11.8 0.0 0.35 10.0 0.0 1.9 2 0 0 2 2 2 0 AF2226-like SPOUT RNA Methylase fused to THUMP HTH_10 PF04967.7 gi|336251987|ref|YP_004585955.1| - 2.6e-18 65.3 0.0 4.3e-18 64.6 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_24 PF13412.1 gi|336251987|ref|YP_004585955.1| - 0.0003 20.1 0.1 0.00057 19.2 0.1 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Sigma70_r4_2 PF08281.7 gi|336251987|ref|YP_004585955.1| - 0.0016 17.8 0.3 0.94 8.9 0.0 2.3 2 0 0 2 2 2 2 Sigma-70, region 4 Sigma70_r4 PF04545.11 gi|336251987|ref|YP_004585955.1| - 0.0055 15.9 0.1 0.012 14.9 0.1 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 MarR_2 PF12802.2 gi|336251987|ref|YP_004585955.1| - 0.011 15.3 0.0 0.06 13.0 0.0 2.2 2 0 0 2 2 2 0 MarR family HTH_11 PF08279.7 gi|336251987|ref|YP_004585955.1| - 0.012 15.2 0.0 0.027 14.1 0.0 1.5 1 0 0 1 1 1 0 HTH domain HTH_5 PF01022.15 gi|336251987|ref|YP_004585955.1| - 0.015 14.9 0.0 0.029 14.0 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family GntR PF00392.16 gi|336251987|ref|YP_004585955.1| - 0.035 13.5 0.2 0.071 12.5 0.2 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_AsnC-type PF13404.1 gi|336251987|ref|YP_004585955.1| - 0.074 12.5 0.1 0.28 10.7 0.0 2.1 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain TetR_N PF00440.18 gi|336251987|ref|YP_004585955.1| - 0.086 12.4 0.0 0.25 10.9 0.0 1.7 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family HTH_20 PF12840.2 gi|336251987|ref|YP_004585955.1| - 0.11 12.3 0.1 0.27 11.0 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Tnp_1_2 PF13022.1 gi|336251987|ref|YP_004585955.1| - 0.16 11.7 0.0 0.36 10.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase Pro_dh PF01619.13 gi|336251988|ref|YP_004585956.1| - 5.9e-35 120.7 0.1 1.7e-34 119.2 0.0 1.6 1 1 0 1 1 1 1 Proline dehydrogenase DUF3961 PF13106.1 gi|336251989|ref|YP_004585957.1| - 0.32 10.5 2.0 0.37 10.4 1.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3961) SSF PF00474.12 gi|336251990|ref|YP_004585958.1| - 2.1e-65 220.9 28.4 3.3e-65 220.3 19.7 1.3 1 0 0 1 1 1 1 Sodium:solute symporter family DAGK_cat PF00781.19 gi|336251994|ref|YP_004585962.1| - 9.9e-21 73.5 0.4 1.7e-20 72.7 0.3 1.3 1 0 0 1 1 1 1 Diacylglycerol kinase catalytic domain NAD_kinase PF01513.16 gi|336251994|ref|YP_004585962.1| - 0.00024 19.9 0.4 0.00038 19.3 0.2 1.2 1 0 0 1 1 1 1 ATP-NAD kinase Mrr_cat PF04471.7 gi|336251995|ref|YP_004585963.1| - 4.3e-30 103.8 0.1 6.5e-30 103.2 0.1 1.3 1 0 0 1 1 1 1 Restriction endonuclease Mrr_cat_2 PF13156.1 gi|336251995|ref|YP_004585963.1| - 9.8e-05 22.2 0.3 0.00029 20.7 0.1 1.8 2 0 0 2 2 2 1 Restriction endonuclease GTP-bdg_N PF13167.1 gi|336251995|ref|YP_004585963.1| - 0.027 14.6 0.2 0.057 13.5 0.1 1.5 1 0 0 1 1 1 0 GTP-binding GTPase N-terminal AhpC-TSA PF00578.16 gi|336251996|ref|YP_004585964.1| - 1.5e-15 56.9 0.1 2.2e-15 56.4 0.1 1.2 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|336251996|ref|YP_004585964.1| - 1.5e-13 50.5 0.1 2.3e-13 49.9 0.1 1.3 1 0 0 1 1 1 1 Redoxin Thioredoxin_8 PF13905.1 gi|336251996|ref|YP_004585964.1| - 5.4e-06 26.4 0.0 1.2e-05 25.3 0.0 1.5 1 1 0 1 1 1 1 Thioredoxin-like Thioredoxin_2 PF13098.1 gi|336251996|ref|YP_004585964.1| - 2e-05 24.7 0.1 4e-05 23.7 0.0 1.4 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_3 PF13192.1 gi|336251996|ref|YP_004585964.1| - 0.039 13.7 0.1 1.1 9.1 0.2 2.2 2 0 0 2 2 2 0 Thioredoxin domain CGGC PF08821.6 gi|336251996|ref|YP_004585964.1| - 0.11 12.5 0.0 0.19 11.8 0.0 1.3 1 0 0 1 1 1 0 CGGC domain PQQ_2 PF13360.1 gi|336251998|ref|YP_004585966.1| - 7.5e-31 107.4 7.5 1e-18 67.7 0.1 3.4 1 1 2 3 3 3 3 PQQ-like domain PQQ_3 PF13570.1 gi|336251998|ref|YP_004585966.1| - 3.1e-21 74.9 30.4 4.7e-06 26.6 0.2 8.3 8 0 0 8 8 8 5 PQQ-like domain PQQ PF01011.16 gi|336251998|ref|YP_004585966.1| - 1.3e-18 65.5 4.8 0.0025 17.2 0.0 6.5 6 0 0 6 6 6 4 PQQ enzyme repeat Polysacc_deac_1 PF01522.16 gi|336252000|ref|YP_004585968.1| - 1.6e-20 72.9 0.0 2.6e-20 72.3 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide deacetylase OrfB_IS605 PF01385.14 gi|336252001|ref|YP_004585969.1| - 7.1e-43 146.6 0.0 1e-42 146.1 0.0 1.2 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|336252001|ref|YP_004585969.1| - 3.3e-23 81.1 2.1 6.3e-23 80.2 1.5 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain ENT PF03735.9 gi|336252001|ref|YP_004585969.1| - 0.13 12.0 0.4 0.65 9.7 0.3 2.2 1 1 0 1 1 1 0 ENT domain PadR PF03551.9 gi|336252002|ref|YP_004585970.1| - 1.9e-13 49.9 0.3 2.3e-13 49.7 0.2 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.1 gi|336252002|ref|YP_004585970.1| - 0.0022 17.7 0.1 0.003 17.3 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_27 PF13463.1 gi|336252002|ref|YP_004585970.1| - 0.0081 16.4 0.0 0.011 16.1 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain MotA_activ PF09114.5 gi|336252002|ref|YP_004585970.1| - 0.04 13.6 0.0 0.046 13.4 0.0 1.2 1 0 0 1 1 1 0 Transcription factor MotA, activation domain HTH_34 PF13601.1 gi|336252002|ref|YP_004585970.1| - 0.051 13.6 0.0 0.059 13.3 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF4364 PF14277.1 gi|336252002|ref|YP_004585970.1| - 0.13 11.8 0.1 0.24 11.0 0.0 1.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4364) TIM-br_sig_trns PF09370.5 gi|336252003|ref|YP_004585971.1| - 1.4e-131 437.4 0.1 1.6e-131 437.2 0.1 1.0 1 0 0 1 1 1 1 TIM-barrel signal transduction protein NMO PF03060.10 gi|336252003|ref|YP_004585971.1| - 0.00067 18.9 0.1 0.0012 18.0 0.0 1.4 2 0 0 2 2 2 1 Nitronate monooxygenase Amidohydro_2 PF04909.9 gi|336252003|ref|YP_004585971.1| - 0.036 13.6 0.0 0.052 13.0 0.0 1.3 1 0 0 1 1 1 0 Amidohydrolase Cupin_2 PF07883.6 gi|336252004|ref|YP_004585972.1| - 1.8e-20 72.2 1.5 3e-20 71.4 1.0 1.4 1 0 0 1 1 1 1 Cupin domain Cupin_1 PF00190.17 gi|336252004|ref|YP_004585972.1| - 2.7e-09 36.6 0.0 3.6e-09 36.1 0.0 1.2 1 0 0 1 1 1 1 Cupin AraC_binding PF02311.14 gi|336252004|ref|YP_004585972.1| - 1.6e-08 34.3 0.1 2.5e-08 33.6 0.0 1.3 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_3 PF05899.7 gi|336252004|ref|YP_004585972.1| - 1.9e-08 33.5 0.4 4e-08 32.5 0.3 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF861) MannoseP_isomer PF01050.13 gi|336252004|ref|YP_004585972.1| - 4.4e-07 29.6 0.0 5.6e-07 29.2 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase CENP-C_C PF11699.3 gi|336252004|ref|YP_004585972.1| - 8.3e-05 22.4 0.0 0.00012 21.9 0.0 1.1 1 0 0 1 1 1 1 Mif2/CENP-C like Cupin_7 PF12973.2 gi|336252004|ref|YP_004585972.1| - 0.00035 20.3 0.1 0.0006 19.6 0.1 1.4 1 0 0 1 1 1 1 ChrR Cupin-like domain Cupin_6 PF12852.2 gi|336252004|ref|YP_004585972.1| - 0.0025 17.4 0.1 0.003 17.1 0.1 1.2 1 0 0 1 1 1 1 Cupin Pirin_C PF05726.8 gi|336252004|ref|YP_004585972.1| - 0.005 16.9 0.0 0.0067 16.4 0.0 1.2 1 0 0 1 1 1 1 Pirin C-terminal cupin domain ARD PF03079.9 gi|336252004|ref|YP_004585972.1| - 0.054 13.4 0.2 0.083 12.8 0.1 1.2 1 0 0 1 1 1 0 ARD/ARD' family CDO_I PF05995.7 gi|336252004|ref|YP_004585972.1| - 0.06 12.5 0.0 0.13 11.3 0.0 1.6 1 1 0 1 1 1 0 Cysteine dioxygenase type I GPI PF06560.6 gi|336252004|ref|YP_004585972.1| - 0.096 11.6 0.1 0.16 10.9 0.0 1.4 1 1 0 1 1 1 0 Glucose-6-phosphate isomerase (GPI) UPF0261 PF06792.6 gi|336252005|ref|YP_004585973.1| - 5.5e-170 565.1 3.2 6.3e-170 565.0 2.2 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0261) Clp_N PF02861.15 gi|336252005|ref|YP_004585973.1| - 0.013 15.4 0.1 4.5 7.2 0.0 2.7 2 0 0 2 2 2 0 Clp amino terminal domain PAS_4 PF08448.5 gi|336252006|ref|YP_004585974.1| - 1.1e-28 99.5 2.7 2.7e-16 59.5 0.1 3.2 3 0 0 3 3 3 2 PAS fold HATPase_c PF02518.21 gi|336252006|ref|YP_004585974.1| - 4.5e-28 97.1 0.0 1.5e-27 95.5 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|336252006|ref|YP_004585974.1| - 3.4e-20 72.3 0.7 4.5e-11 43.0 0.0 2.6 2 0 0 2 2 2 2 PAS domain PAS_3 PF08447.6 gi|336252006|ref|YP_004585974.1| - 1.5e-15 57.0 2.2 7.2e-12 45.2 0.1 2.7 2 0 0 2 2 2 2 PAS fold HisKA PF00512.20 gi|336252006|ref|YP_004585974.1| - 4.8e-13 48.8 2.6 2.5e-12 46.5 0.1 2.8 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS PF00989.19 gi|336252006|ref|YP_004585974.1| - 1e-10 41.3 0.2 1.5e-05 24.7 0.0 2.8 2 0 0 2 2 2 2 PAS fold GAF_2 PF13185.1 gi|336252006|ref|YP_004585974.1| - 1.9e-07 31.6 0.1 5.7e-07 30.1 0.0 1.9 2 0 0 2 2 1 1 GAF domain PAS_8 PF13188.1 gi|336252006|ref|YP_004585974.1| - 1.5e-06 27.8 0.0 8.3e-05 22.3 0.0 2.8 2 0 0 2 2 2 1 PAS domain HATPase_c_5 PF14501.1 gi|336252006|ref|YP_004585974.1| - 4.2e-06 26.3 0.0 1.1e-05 25.0 0.0 1.7 1 0 0 1 1 1 1 GHKL domain GAF_3 PF13492.1 gi|336252006|ref|YP_004585974.1| - 3.6e-05 23.8 0.0 0.00012 22.2 0.0 2.0 2 0 0 2 2 2 1 GAF domain GAF PF01590.21 gi|336252006|ref|YP_004585974.1| - 0.0014 18.7 0.0 0.019 15.0 0.0 2.7 3 0 0 3 3 3 1 GAF domain HATPase_c_3 PF13589.1 gi|336252006|ref|YP_004585974.1| - 0.0039 16.8 0.0 0.0096 15.5 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|336252006|ref|YP_004585974.1| - 0.025 14.3 0.8 0.078 12.7 0.1 2.3 2 1 0 2 2 2 0 Histidine kinase-like ATPase domain Cache_3 PF14827.1 gi|336252006|ref|YP_004585974.1| - 0.063 13.1 0.0 0.53 10.1 0.0 2.4 2 1 0 2 2 2 0 Sensory domain of two-component sensor kinase MLTD_N PF06474.7 gi|336252007|ref|YP_004585975.1| - 0.29 11.3 2.2 0.48 10.6 0.9 1.8 2 0 0 2 2 2 0 MltD lipid attachment motif DUF502 PF04367.8 gi|336252008|ref|YP_004585976.1| - 1.1e-14 54.1 1.1 1.4e-14 53.8 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF502) DUF4203 PF13886.1 gi|336252008|ref|YP_004585976.1| - 0.13 11.7 2.9 0.18 11.2 2.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4203) DUF624 PF04854.9 gi|336252008|ref|YP_004585976.1| - 0.23 11.3 2.2 0.5 10.2 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function, DUF624 GFO_IDH_MocA PF01408.17 gi|336252009|ref|YP_004585977.1| - 8.7e-24 84.3 0.1 1.5e-23 83.5 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|336252009|ref|YP_004585977.1| - 1.4e-10 40.9 0.0 2.4e-10 40.2 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain Semialdhyde_dh PF01118.19 gi|336252009|ref|YP_004585977.1| - 6.2e-05 23.2 0.0 0.00012 22.3 0.0 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Phage_integrase PF00589.17 gi|336252011|ref|YP_004585979.1| - 3.9e-12 46.1 0.0 6.9e-12 45.3 0.0 1.4 1 1 0 1 1 1 1 Phage integrase family Pribosyltran PF00156.22 gi|336252012|ref|YP_004585980.1| - 0.0048 16.6 0.1 0.0087 15.7 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosyl transferase domain C1_1 PF00130.17 gi|336252012|ref|YP_004585980.1| - 0.21 11.3 1.9 0.52 10.0 1.4 1.6 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) DNA_processg_A PF02481.10 gi|336252013|ref|YP_004585981.1| - 1.1e-55 187.8 0.0 1.4e-55 187.4 0.0 1.1 1 0 0 1 1 1 1 DNA recombination-mediator protein A Arylsulfotrans PF05935.6 gi|336252014|ref|YP_004585982.1| - 3e-09 35.9 1.0 6.2e-08 31.5 0.1 2.3 2 1 0 2 2 2 2 Arylsulfotransferase (ASST) Arylsulfotran_2 PF14269.1 gi|336252014|ref|YP_004585982.1| - 3.3e-08 33.0 0.1 1.8e-05 24.0 0.0 3.2 2 1 1 3 3 3 1 Arylsulfotransferase (ASST) NHL PF01436.16 gi|336252014|ref|YP_004585982.1| - 0.38 10.7 2.3 2.1 8.4 0.1 3.0 3 0 0 3 3 3 0 NHL repeat DUF1434 PF07254.7 gi|336252015|ref|YP_004585983.1| - 0.018 14.8 1.4 0.019 14.7 1.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1434) SdpI PF13630.1 gi|336252015|ref|YP_004585983.1| - 0.022 14.4 3.1 0.023 14.3 2.2 1.1 1 0 0 1 1 1 0 SdpI/YhfL protein family DUF308 PF03729.8 gi|336252015|ref|YP_004585983.1| - 0.29 11.1 6.3 0.55 10.2 4.4 1.5 1 1 0 1 1 1 0 Short repeat of unknown function (DUF308) DUF3899 PF13038.1 gi|336252015|ref|YP_004585983.1| - 0.32 11.1 0.5 0.32 11.1 0.3 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF3899) 2TM PF13239.1 gi|336252015|ref|YP_004585983.1| - 0.33 11.0 3.8 0.42 10.6 2.6 1.4 1 1 0 1 1 1 0 2TM domain Neurensin PF14927.1 gi|336252015|ref|YP_004585983.1| - 9.1 5.6 6.7 36 3.7 4.6 1.8 1 1 0 1 1 1 0 Neurensin Zip PF02535.17 gi|336252016|ref|YP_004585984.1| - 0.18 10.7 24.2 0.064 12.2 8.2 2.1 2 0 0 2 2 2 0 ZIP Zinc transporter Multi_Drug_Res PF00893.14 gi|336252017|ref|YP_004585985.1| - 5.9e-27 93.9 5.8 8.3e-27 93.4 4.0 1.2 1 0 0 1 1 1 1 Small Multidrug Resistance protein EamA PF00892.15 gi|336252017|ref|YP_004585985.1| - 0.076 13.0 12.5 0.22 11.5 8.7 1.7 1 1 0 1 1 1 0 EamA-like transporter family EmrE PF13536.1 gi|336252017|ref|YP_004585985.1| - 0.094 12.9 12.0 0.19 11.9 8.3 1.5 1 1 0 1 1 1 0 Multidrug resistance efflux transporter Bax1-I PF01027.15 gi|336252017|ref|YP_004585985.1| - 1.9 8.0 10.9 2.3 7.7 7.5 1.1 1 0 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 PsbN PF02468.10 gi|336252017|ref|YP_004585985.1| - 3.1 7.4 7.3 13 5.4 0.1 3.0 2 1 0 2 2 2 0 Photosystem II reaction centre N protein (psbN) PAC2 PF09754.4 gi|336252018|ref|YP_004585986.1| - 5.7e-39 134.2 0.4 6.8e-39 133.9 0.3 1.0 1 0 0 1 1 1 1 PAC2 family Seryl_tRNA_N PF02403.17 gi|336252018|ref|YP_004585986.1| - 0.0052 16.7 0.7 0.038 14.0 0.1 2.1 2 0 0 2 2 2 1 Seryl-tRNA synthetase N-terminal domain WXG100 PF06013.7 gi|336252018|ref|YP_004585986.1| - 0.026 14.5 3.6 0.057 13.4 2.5 1.5 1 0 0 1 1 1 0 Proteins of 100 residues with WXG NTP_transf_3 PF12804.2 gi|336252018|ref|YP_004585986.1| - 0.044 13.8 1.1 0.085 12.9 0.6 1.6 1 1 0 1 1 1 0 MobA-like NTP transferase domain CLP_protease PF00574.18 gi|336252018|ref|YP_004585986.1| - 0.062 12.9 0.1 0.088 12.4 0.0 1.3 1 0 0 1 1 1 0 Clp protease FlxA PF14282.1 gi|336252018|ref|YP_004585986.1| - 0.15 11.9 10.7 0.27 11.1 7.4 1.3 1 0 0 1 1 1 0 FlxA-like protein Peptidase_M24 PF00557.19 gi|336252019|ref|YP_004585987.1| - 7e-36 123.7 0.1 9.8e-36 123.2 0.0 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|336252019|ref|YP_004585987.1| - 3.5e-22 79.3 0.1 6.8e-22 78.3 0.0 1.5 1 0 0 1 1 1 1 Creatinase/Prolidase N-terminal domain HAD_2 PF13419.1 gi|336252020|ref|YP_004585988.1| - 1.3e-29 103.6 0.1 1.6e-29 103.4 0.1 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|336252020|ref|YP_004585988.1| - 3.2e-08 34.2 0.0 6.2e-06 26.7 0.0 2.1 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|336252020|ref|YP_004585988.1| - 0.00024 21.3 0.0 0.00029 21.0 0.0 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|336252020|ref|YP_004585988.1| - 0.0015 18.1 0.0 0.003 17.2 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like Antitoxin-MazE PF04014.13 gi|336252021|ref|YP_004585989.1| - 0.00012 21.7 0.1 0.00016 21.3 0.1 1.3 1 0 0 1 1 1 1 Antidote-toxin recognition MazE PIN PF01850.16 gi|336252022|ref|YP_004585990.1| - 3.8e-15 56.2 0.6 4.3e-15 56.1 0.4 1.0 1 0 0 1 1 1 1 PIN domain FAD-oxidase_C PF02913.14 gi|336252023|ref|YP_004585991.1| - 8e-60 202.2 0.6 2.5e-59 200.6 0.1 2.0 2 0 0 2 2 2 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.18 gi|336252023|ref|YP_004585991.1| - 4.8e-41 139.4 1.3 8.7e-41 138.6 0.9 1.5 1 0 0 1 1 1 1 FAD binding domain Fer4_17 PF13534.1 gi|336252023|ref|YP_004585991.1| - 2.2e-08 34.3 4.5 4.2e-08 33.4 3.1 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain CCG PF02754.11 gi|336252023|ref|YP_004585991.1| - 3.3e-07 30.2 0.0 1.4e-05 24.9 0.0 2.6 2 0 0 2 2 2 1 Cysteine-rich domain Fer4_8 PF13183.1 gi|336252023|ref|YP_004585991.1| - 2e-06 27.7 5.7 4e-06 26.7 3.9 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|336252023|ref|YP_004585991.1| - 0.007 16.7 5.6 0.032 14.6 3.9 2.2 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|336252023|ref|YP_004585991.1| - 0.031 14.1 4.2 0.12 12.2 0.3 2.4 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|336252023|ref|YP_004585991.1| - 0.15 12.8 1.8 0.32 11.7 0.1 2.3 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Cytokin-bind PF09265.5 gi|336252023|ref|YP_004585991.1| - 0.19 10.8 0.0 0.32 10.1 0.0 1.2 1 0 0 1 1 1 0 Cytokinin dehydrogenase 1, FAD and cytokinin binding Fer4_10 PF13237.1 gi|336252023|ref|YP_004585991.1| - 0.51 10.1 9.2 0.16 11.7 1.5 2.3 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|336252023|ref|YP_004585991.1| - 0.91 9.8 9.5 0.097 12.9 1.3 2.3 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|336252023|ref|YP_004585991.1| - 1.3 9.4 8.3 1 9.7 1.6 2.4 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4 PF00037.22 gi|336252023|ref|YP_004585991.1| - 8.3 6.1 14.0 0.14 11.8 2.9 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_2 PF12797.2 gi|336252023|ref|YP_004585991.1| - 9.9 6.3 8.8 0.7 9.9 1.2 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain 2-Hacid_dh_C PF02826.14 gi|336252024|ref|YP_004585992.1| - 4.1e-54 182.4 0.0 6.8e-54 181.7 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|336252024|ref|YP_004585992.1| - 8.6e-14 51.1 0.0 1.1e-13 50.7 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain F420_oxidored PF03807.12 gi|336252024|ref|YP_004585992.1| - 0.00031 21.0 0.0 0.0023 18.3 0.0 2.2 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent TrkA_N PF02254.13 gi|336252024|ref|YP_004585992.1| - 0.016 15.1 0.5 1.4 8.9 0.1 3.0 3 0 0 3 3 3 0 TrkA-N domain IlvN PF07991.7 gi|336252024|ref|YP_004585992.1| - 0.023 14.0 0.0 0.044 13.1 0.0 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain ThiF PF00899.16 gi|336252024|ref|YP_004585992.1| - 0.063 13.0 0.4 0.21 11.4 0.1 1.9 2 0 0 2 2 2 0 ThiF family NAD_binding_2 PF03446.10 gi|336252024|ref|YP_004585992.1| - 0.069 12.9 0.0 0.13 12.0 0.0 1.5 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|336252024|ref|YP_004585992.1| - 0.13 11.9 0.9 8.4 6.0 0.0 3.1 3 1 1 4 4 4 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Ifi-6-16 PF06140.8 gi|336252024|ref|YP_004585992.1| - 2.9 7.7 6.8 0.71 9.6 0.4 2.6 3 0 0 3 3 3 0 Interferon-induced 6-16 family Peptidase_M20 PF01546.23 gi|336252025|ref|YP_004585993.1| - 2.4e-23 82.6 3.8 4e-23 81.8 2.6 1.4 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|336252025|ref|YP_004585993.1| - 4.4e-11 42.5 0.7 4.4e-11 42.5 0.5 1.7 2 0 0 2 2 2 1 Peptidase dimerisation domain Radical_SAM PF04055.16 gi|336252025|ref|YP_004585993.1| - 0.1 12.7 0.2 1.1 9.3 0.0 2.5 3 0 0 3 3 3 0 Radical SAM superfamily PALP PF00291.20 gi|336252026|ref|YP_004585994.1| - 2.1e-77 260.3 5.5 3.3e-77 259.7 3.8 1.3 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Arylsulfotrans PF05935.6 gi|336252028|ref|YP_004585996.1| - 4.7e-11 41.8 1.6 7.5e-09 34.6 0.4 3.0 1 1 0 2 2 2 2 Arylsulfotransferase (ASST) Arylsulfotran_2 PF14269.1 gi|336252028|ref|YP_004585996.1| - 2.6e-09 36.6 0.3 1.7e-07 30.7 0.1 2.5 2 1 0 2 2 2 1 Arylsulfotransferase (ASST) NHL PF01436.16 gi|336252028|ref|YP_004585996.1| - 0.012 15.5 1.7 0.26 11.3 0.0 3.4 3 0 0 3 3 3 0 NHL repeat MSC PF09402.5 gi|336252028|ref|YP_004585996.1| - 0.43 9.2 1.4 0.61 8.7 0.9 1.2 1 0 0 1 1 1 0 Man1-Src1p-C-terminal domain Aminotran_3 PF00202.16 gi|336252029|ref|YP_004585997.1| - 4.2e-61 206.6 0.0 1.2e-60 205.2 0.0 1.6 1 1 0 1 1 1 1 Aminotransferase class-III DUF4113 PF13438.1 gi|336252029|ref|YP_004585997.1| - 0.066 12.8 0.0 0.18 11.4 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4113) BCCT PF02028.12 gi|336252030|ref|YP_004585998.1| - 8.7e-154 512.3 50.6 9.9e-154 512.1 35.1 1.0 1 0 0 1 1 1 1 BCCT family transporter Sdh5 PF03937.11 gi|336252031|ref|YP_004585999.1| - 0.032 13.9 0.2 0.075 12.7 0.1 1.6 1 0 0 1 1 1 0 Flavinator of succinate dehydrogenase ABC1 PF03109.11 gi|336252031|ref|YP_004585999.1| - 0.18 11.7 0.7 1.1 9.2 0.1 2.0 2 0 0 2 2 2 0 ABC1 family Peptidase_M20 PF01546.23 gi|336252032|ref|YP_004586000.1| - 1.5e-23 83.2 10.7 1.1e-22 80.4 7.4 2.0 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|336252032|ref|YP_004586000.1| - 2.4e-10 40.1 0.3 5.8e-10 38.9 0.2 1.6 1 0 0 1 1 1 1 Peptidase dimerisation domain Ribonuc_L-PSP PF01042.16 gi|336252033|ref|YP_004586001.1| - 4.6e-37 126.4 0.0 5.1e-37 126.3 0.0 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP GGDEF PF00990.16 gi|336252033|ref|YP_004586001.1| - 0.0077 15.8 0.0 0.01 15.4 0.0 1.2 1 0 0 1 1 1 1 GGDEF domain Aminotran_3 PF00202.16 gi|336252034|ref|YP_004586002.1| - 1.4e-91 306.8 0.0 1.7e-91 306.6 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III AFOR_C PF01314.13 gi|336252035|ref|YP_004586003.1| - 3.7e-76 256.2 0.2 1.9e-75 253.9 0.2 1.9 1 1 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|336252035|ref|YP_004586003.1| - 8.9e-54 181.8 0.0 1.6e-53 181.0 0.0 1.4 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain HTH_20 PF12840.2 gi|336252036|ref|YP_004586004.1| - 3.4e-06 26.7 0.0 6.5e-06 25.8 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain UPF0547 PF10571.4 gi|336252036|ref|YP_004586004.1| - 0.02 14.5 0.1 0.064 12.9 0.0 1.9 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 DZR PF12773.2 gi|336252036|ref|YP_004586004.1| - 0.035 13.9 3.5 0.82 9.5 0.4 2.6 2 1 0 2 2 2 0 Double zinc ribbon Lar_restr_allev PF14354.1 gi|336252036|ref|YP_004586004.1| - 0.29 11.4 6.1 6.4 7.1 0.5 2.8 1 1 1 2 2 2 0 Restriction alleviation protein Lar TF_Zn_Ribbon PF08271.7 gi|336252036|ref|YP_004586004.1| - 0.33 10.2 12.4 2.2 7.6 2.1 3.9 3 1 0 3 3 3 0 TFIIB zinc-binding DUF2387 PF09526.5 gi|336252036|ref|YP_004586004.1| - 0.35 10.8 3.2 15 5.6 0.4 2.4 2 0 0 2 2 2 0 Probable metal-binding protein (DUF2387) zf-ribbon_3 PF13248.1 gi|336252036|ref|YP_004586004.1| - 0.76 9.0 5.9 5.3 6.3 1.9 2.8 2 1 0 2 2 2 0 zinc-ribbon domain FYVE PF01363.16 gi|336252036|ref|YP_004586004.1| - 0.78 9.6 4.5 0.17 11.8 0.6 1.7 2 0 0 2 2 2 0 FYVE zinc finger Nudix_N_2 PF14803.1 gi|336252036|ref|YP_004586004.1| - 1.9 8.2 7.4 52 3.6 2.8 3.5 2 1 0 2 2 2 0 Nudix N-terminal zinc-ribbons_6 PF07191.7 gi|336252036|ref|YP_004586004.1| - 5.7 6.8 6.1 0.66 9.8 0.4 2.2 2 1 0 2 2 2 0 zinc-ribbons Na_Ca_ex PF01699.19 gi|336252037|ref|YP_004586005.1| - 1.2e-43 148.1 25.7 1.1e-22 80.1 7.6 2.1 2 0 0 2 2 2 2 Sodium/calcium exchanger protein 2TM PF13239.1 gi|336252037|ref|YP_004586005.1| - 0.027 14.5 0.0 0.027 14.5 0.0 2.3 3 0 0 3 3 3 0 2TM domain Sod_Fe_C PF02777.13 gi|336252038|ref|YP_004586006.1| - 1e-36 124.9 0.2 1.7e-36 124.2 0.1 1.3 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, C-terminal domain Sod_Fe_N PF00081.17 gi|336252038|ref|YP_004586006.1| - 5.8e-33 112.9 0.6 9.6e-33 112.2 0.4 1.4 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, alpha-hairpin domain Pirin PF02678.11 gi|336252039|ref|YP_004586007.1| - 2.1e-22 78.9 0.0 4.2e-22 78.0 0.0 1.5 1 0 0 1 1 1 1 Pirin Pirin_C PF05726.8 gi|336252039|ref|YP_004586007.1| - 2.5e-13 50.0 0.0 3e-12 46.5 0.0 2.1 2 0 0 2 2 2 1 Pirin C-terminal cupin domain Cupin_2 PF07883.6 gi|336252039|ref|YP_004586007.1| - 0.00014 21.2 1.0 0.033 13.6 0.1 2.5 2 0 0 2 2 2 2 Cupin domain Pyr_redox_2 PF07992.9 gi|336252040|ref|YP_004586008.1| - 1.6e-17 64.0 0.7 1.6e-12 47.7 0.0 2.4 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|336252040|ref|YP_004586008.1| - 6.4e-16 58.2 0.2 1.9e-08 33.6 0.0 2.1 1 1 1 2 2 2 2 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|336252040|ref|YP_004586008.1| - 9.3e-13 47.4 0.0 3.6e-06 25.7 0.0 2.2 2 0 0 2 2 2 2 HI0933-like protein Pyr_redox_3 PF13738.1 gi|336252040|ref|YP_004586008.1| - 8.7e-11 42.2 0.3 1.7e-05 24.9 0.0 2.1 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|336252040|ref|YP_004586008.1| - 5e-08 32.1 0.8 8.5e-06 24.8 0.1 2.3 1 1 1 2 2 2 2 FAD binding domain NAD_binding_9 PF13454.1 gi|336252040|ref|YP_004586008.1| - 8.2e-08 32.1 0.0 0.0013 18.5 0.0 2.4 2 0 0 2 2 2 2 FAD-NAD(P)-binding GIDA PF01134.17 gi|336252040|ref|YP_004586008.1| - 2.2e-07 30.0 0.1 5.5e-06 25.4 0.0 2.2 1 1 0 2 2 2 1 Glucose inhibited division protein A FAD_binding_3 PF01494.14 gi|336252040|ref|YP_004586008.1| - 4.5e-07 29.2 3.8 0.0027 16.8 0.0 2.1 1 1 1 2 2 2 2 FAD binding domain FAD_oxidored PF12831.2 gi|336252040|ref|YP_004586008.1| - 1.7e-06 27.4 2.6 1.5e-05 24.2 0.1 2.1 1 1 1 2 2 2 1 FAD dependent oxidoreductase Thi4 PF01946.12 gi|336252040|ref|YP_004586008.1| - 2e-05 23.7 0.0 4.2e-05 22.7 0.0 1.5 1 0 0 1 1 1 1 Thi4 family NAD_binding_8 PF13450.1 gi|336252040|ref|YP_004586008.1| - 0.00028 20.8 0.0 0.00059 19.8 0.0 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.22 gi|336252040|ref|YP_004586008.1| - 0.0005 20.4 0.3 0.039 14.3 0.1 2.6 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|336252040|ref|YP_004586008.1| - 0.00087 18.3 0.1 0.0071 15.3 0.0 2.0 1 1 1 2 2 2 1 Lycopene cyclase protein K_oxygenase PF13434.1 gi|336252040|ref|YP_004586008.1| - 0.00088 18.2 0.1 0.77 8.6 0.0 2.1 1 1 0 2 2 2 2 L-lysine 6-monooxygenase (NADPH-requiring) 3HCDH_N PF02737.13 gi|336252040|ref|YP_004586008.1| - 0.022 14.4 0.0 0.038 13.6 0.0 1.6 1 1 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.16 gi|336252040|ref|YP_004586008.1| - 0.068 12.7 0.0 1.6 8.2 0.0 2.2 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Trp_halogenase PF04820.9 gi|336252040|ref|YP_004586008.1| - 0.073 11.6 1.1 1.6 7.2 0.0 2.2 2 0 0 2 2 2 0 Tryptophan halogenase TetR_N PF00440.18 gi|336252042|ref|YP_004586010.1| - 5.8e-11 41.8 0.0 1e-10 41.0 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_6 PF13977.1 gi|336252042|ref|YP_004586010.1| - 7.2e-10 38.9 1.1 1.3e-09 38.1 0.8 1.4 1 0 0 1 1 1 1 Bacterial transcriptional repressor TetR_C_9 PF14514.1 gi|336252042|ref|YP_004586010.1| - 0.0015 18.3 0.2 0.0031 17.3 0.0 1.7 2 0 0 2 2 2 1 Transcriptional regulator, TetR, C-terminal UPF0175 PF03683.8 gi|336252044|ref|YP_004586012.1| - 0.022 14.1 0.1 0.038 13.4 0.1 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0175) GTP_EFTU PF00009.22 gi|336252046|ref|YP_004586014.1| - 1.1e-57 194.5 0.1 1.4e-57 194.2 0.0 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.12 gi|336252046|ref|YP_004586014.1| - 9.4e-31 105.9 0.1 3.9e-30 103.9 0.0 2.0 2 0 0 2 2 2 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.20 gi|336252046|ref|YP_004586014.1| - 4.9e-17 61.7 2.3 1.4e-16 60.3 1.0 2.2 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|336252046|ref|YP_004586014.1| - 3.1e-08 33.5 0.0 6.1e-08 32.6 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase Miro PF08477.8 gi|336252046|ref|YP_004586014.1| - 4.4e-06 27.1 0.1 7.1e-05 23.2 0.0 2.8 2 1 0 2 2 2 1 Miro-like protein GTP_EFTU_D4 PF14578.1 gi|336252046|ref|YP_004586014.1| - 0.0001 21.8 0.3 0.00042 19.8 0.1 2.1 2 0 0 2 2 2 1 Elongation factor Tu domain 4 Dynamin_N PF00350.18 gi|336252046|ref|YP_004586014.1| - 0.00075 19.3 0.1 0.41 10.4 0.0 2.4 1 1 1 2 2 2 2 Dynamin family Ras PF00071.17 gi|336252046|ref|YP_004586014.1| - 0.0013 18.1 1.1 0.0059 16.0 0.3 2.1 2 0 0 2 2 2 1 Ras family Gtr1_RagA PF04670.7 gi|336252046|ref|YP_004586014.1| - 0.0021 17.2 0.1 0.32 10.0 0.0 2.2 2 0 0 2 2 2 1 Gtr1/RagA G protein conserved region SRPRB PF09439.5 gi|336252046|ref|YP_004586014.1| - 0.0044 16.2 0.0 0.1 11.8 0.0 2.3 1 1 0 1 1 1 1 Signal recognition particle receptor beta subunit FeoB_N PF02421.13 gi|336252046|ref|YP_004586014.1| - 0.0071 15.6 0.2 0.14 11.4 0.3 2.4 2 1 0 2 2 2 1 Ferrous iron transport protein B Septin PF00735.13 gi|336252046|ref|YP_004586014.1| - 0.014 14.4 0.0 0.029 13.4 0.0 1.4 1 0 0 1 1 1 0 Septin DUF258 PF03193.11 gi|336252046|ref|YP_004586014.1| - 0.1 11.7 0.0 0.52 9.4 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function, DUF258 DUF2513 PF10711.4 gi|336252047|ref|YP_004586015.1| - 2.5e-06 27.5 0.0 3.7e-06 26.9 0.0 1.3 1 1 0 1 1 1 1 Hypothetical protein (DUF2513) PadR PF03551.9 gi|336252047|ref|YP_004586015.1| - 2.2e-05 24.1 0.0 3.8e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family FUR PF01475.14 gi|336252047|ref|YP_004586015.1| - 3e-05 23.9 0.0 5.5e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 Ferric uptake regulator family HTH_20 PF12840.2 gi|336252047|ref|YP_004586015.1| - 0.0013 18.4 0.0 0.0027 17.4 0.0 1.6 1 1 0 1 1 1 1 Helix-turn-helix domain YjcQ PF09639.5 gi|336252047|ref|YP_004586015.1| - 0.0041 17.1 0.0 0.0066 16.5 0.0 1.5 1 1 0 1 1 1 1 YjcQ protein HTH_11 PF08279.7 gi|336252047|ref|YP_004586015.1| - 0.0052 16.3 0.0 0.009 15.6 0.0 1.5 1 1 0 1 1 1 1 HTH domain HTH_34 PF13601.1 gi|336252047|ref|YP_004586015.1| - 0.0057 16.6 0.0 0.011 15.7 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|336252047|ref|YP_004586015.1| - 0.0095 15.6 0.0 0.022 14.4 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF86 PF01934.12 gi|336252047|ref|YP_004586015.1| - 0.018 14.6 0.0 0.096 12.3 0.0 1.9 1 1 0 2 2 2 0 Protein of unknown function DUF86 HTH_45 PF14947.1 gi|336252047|ref|YP_004586015.1| - 0.026 14.3 0.0 0.094 12.5 0.0 1.9 1 1 0 1 1 1 0 Winged helix-turn-helix HTH_5 PF01022.15 gi|336252047|ref|YP_004586015.1| - 0.039 13.6 0.0 0.067 12.8 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|336252047|ref|YP_004586015.1| - 0.046 13.1 0.0 0.1 11.9 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding RuBisCO_small PF00101.15 gi|336252047|ref|YP_004586015.1| - 0.048 13.5 0.0 0.83 9.5 0.0 2.1 1 1 1 2 2 2 0 Ribulose bisphosphate carboxylase, small chain HTH_27 PF13463.1 gi|336252047|ref|YP_004586015.1| - 0.056 13.7 0.0 0.12 12.7 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain Replic_Relax PF13814.1 gi|336252047|ref|YP_004586015.1| - 0.076 12.8 0.0 0.091 12.6 0.0 1.2 1 0 0 1 1 1 0 Replication-relaxation HxlR PF01638.12 gi|336252047|ref|YP_004586015.1| - 0.1 12.2 0.0 0.26 10.9 0.0 1.8 1 1 1 2 2 2 0 HxlR-like helix-turn-helix Stk19 PF10494.4 gi|336252047|ref|YP_004586015.1| - 0.12 11.6 0.0 0.14 11.5 0.0 1.1 1 0 0 1 1 1 0 Serine-threonine protein kinase 19 SBP_bac_7 PF03480.8 gi|336252049|ref|YP_004586017.1| - 7.4e-28 97.4 0.0 1.2e-27 96.7 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein, family 7 SCAN PF02023.12 gi|336252049|ref|YP_004586017.1| - 0.18 11.3 0.5 0.43 10.0 0.1 1.7 2 0 0 2 2 2 0 SCAN domain DctQ PF04290.7 gi|336252050|ref|YP_004586018.1| - 3.7e-18 65.5 12.9 3.7e-18 65.5 8.9 1.6 1 1 1 2 2 2 1 Tripartite ATP-independent periplasmic transporters, DctQ component DctM PF06808.7 gi|336252051|ref|YP_004586019.1| - 7e-76 255.4 41.8 8.3e-76 255.1 29.0 1.0 1 0 0 1 1 1 1 DctM-like transporters Meth_synt_2 PF01717.13 gi|336252053|ref|YP_004586021.1| - 9.1e-23 80.7 0.3 3.5e-13 49.2 0.1 2.2 2 0 0 2 2 2 2 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.7 gi|336252053|ref|YP_004586021.1| - 0.00018 20.8 0.0 0.44 9.7 0.0 2.8 2 1 0 2 2 2 2 Cobalamin-independent synthase, N-terminal domain Ad_cyc_g-alpha PF08509.6 gi|336252053|ref|YP_004586021.1| - 0.096 12.0 0.1 0.25 10.7 0.0 1.7 1 0 0 1 1 1 0 Adenylate cyclase G-alpha binding domain MatE PF01554.13 gi|336252054|ref|YP_004586022.1| - 3.1e-46 156.9 19.7 5.2e-25 87.9 0.6 2.7 2 1 1 3 3 3 2 MatE Polysacc_synt_C PF14667.1 gi|336252054|ref|YP_004586022.1| - 1.8e-09 37.5 8.0 1.8e-09 37.5 5.6 3.9 3 2 0 3 3 3 2 Polysaccharide biosynthesis C-terminal domain MVIN PF03023.9 gi|336252054|ref|YP_004586022.1| - 3.9e-08 32.1 4.6 3.9e-07 28.8 4.4 1.7 2 0 0 2 2 2 1 MviN-like protein Cdc6_C PF09079.6 gi|336252056|ref|YP_004586024.1| - 1.2e-16 60.2 0.1 2.5e-16 59.1 0.1 1.6 1 0 0 1 1 1 1 CDC6, C terminal AAA_22 PF13401.1 gi|336252056|ref|YP_004586024.1| - 1.5e-14 54.2 0.1 3.6e-14 53.0 0.0 1.6 2 0 0 2 2 1 1 AAA domain AAA_16 PF13191.1 gi|336252056|ref|YP_004586024.1| - 1.3e-13 51.4 0.5 1.9e-12 47.5 0.0 2.8 2 2 0 2 2 2 1 AAA ATPase domain AAA_5 PF07728.9 gi|336252056|ref|YP_004586024.1| - 3.5e-06 26.7 0.0 8.7e-06 25.5 0.0 1.7 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.21 gi|336252056|ref|YP_004586024.1| - 6.1e-06 25.8 0.2 1.2e-05 24.8 0.0 1.6 2 0 0 2 2 1 1 Sigma-54 interaction domain AAA PF00004.24 gi|336252056|ref|YP_004586024.1| - 1.1e-05 25.5 0.1 3.1e-05 24.1 0.1 1.8 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NACHT PF05729.7 gi|336252056|ref|YP_004586024.1| - 0.00016 21.3 0.0 0.00032 20.4 0.0 1.5 1 0 0 1 1 1 1 NACHT domain RNA_helicase PF00910.17 gi|336252056|ref|YP_004586024.1| - 0.00025 21.1 0.0 0.00051 20.1 0.0 1.5 1 0 0 1 1 1 1 RNA helicase AAA_24 PF13479.1 gi|336252056|ref|YP_004586024.1| - 0.00028 20.5 0.5 0.00045 19.8 0.3 1.3 1 0 0 1 1 1 1 AAA domain DUF815 PF05673.8 gi|336252056|ref|YP_004586024.1| - 0.00073 18.5 0.0 0.0013 17.7 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) Sigma54_activ_2 PF14532.1 gi|336252056|ref|YP_004586024.1| - 0.00092 19.2 0.0 0.0025 17.8 0.0 1.7 1 1 1 2 2 2 1 Sigma-54 interaction domain Arch_ATPase PF01637.13 gi|336252056|ref|YP_004586024.1| - 0.0014 18.3 0.0 0.0026 17.5 0.0 1.4 1 0 0 1 1 1 1 Archaeal ATPase NB-ARC PF00931.17 gi|336252056|ref|YP_004586024.1| - 0.0019 17.1 0.0 0.0033 16.3 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain PhoH PF02562.11 gi|336252056|ref|YP_004586024.1| - 0.0025 17.0 1.2 1.1 8.4 0.1 2.6 1 1 0 2 2 2 2 PhoH-like protein DUF2075 PF09848.4 gi|336252056|ref|YP_004586024.1| - 0.0038 16.2 0.0 0.0049 15.9 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) Mg_chelatase PF01078.16 gi|336252056|ref|YP_004586024.1| - 0.0042 16.2 0.0 0.008 15.3 0.0 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_2 PF07724.9 gi|336252056|ref|YP_004586024.1| - 0.0065 16.3 0.1 0.011 15.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) DEAD PF00270.24 gi|336252056|ref|YP_004586024.1| - 0.0066 15.9 1.1 0.84 9.1 0.0 2.3 1 1 1 2 2 2 1 DEAD/DEAH box helicase T2SE PF00437.15 gi|336252056|ref|YP_004586024.1| - 0.018 13.9 0.1 0.032 13.1 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein DUF390 PF04094.9 gi|336252056|ref|YP_004586024.1| - 0.019 13.0 0.7 0.025 12.6 0.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF390) AAA_18 PF13238.1 gi|336252056|ref|YP_004586024.1| - 0.026 14.8 0.0 0.055 13.7 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|336252056|ref|YP_004586024.1| - 0.042 13.2 0.0 0.12 11.7 0.0 1.7 1 0 0 1 1 1 0 AAA domain KaiC PF06745.8 gi|336252056|ref|YP_004586024.1| - 0.076 12.1 0.0 0.16 11.0 0.0 1.5 1 0 0 1 1 1 0 KaiC IstB_IS21 PF01695.12 gi|336252056|ref|YP_004586024.1| - 0.088 12.2 0.1 0.53 9.6 0.0 2.0 2 0 0 2 2 2 0 IstB-like ATP binding protein DUF87 PF01935.12 gi|336252056|ref|YP_004586024.1| - 0.1 12.3 0.5 0.3 10.8 0.1 1.8 1 1 1 2 2 2 0 Domain of unknown function DUF87 AAA_17 PF13207.1 gi|336252056|ref|YP_004586024.1| - 0.12 13.1 1.8 0.44 11.3 1.3 2.4 1 1 0 1 1 1 0 AAA domain KAP_NTPase PF07693.9 gi|336252056|ref|YP_004586024.1| - 0.39 9.6 1.5 13 4.6 0.0 2.2 1 1 0 2 2 2 0 KAP family P-loop domain Peptidase_S8 PF00082.17 gi|336252057|ref|YP_004586025.1| - 3e-36 125.0 5.9 3.8e-36 124.6 4.1 1.1 1 0 0 1 1 1 1 Subtilase family Peptidase_M14 PF00246.19 gi|336252058|ref|YP_004586026.1| - 4.4e-21 75.7 0.0 7.2e-21 75.0 0.0 1.2 1 0 0 1 1 1 1 Zinc carboxypeptidase DUF4177 PF13783.1 gi|336252059|ref|YP_004586027.1| - 1.1e-13 50.5 0.2 1.3e-13 50.3 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4177) DUF898 PF05987.8 gi|336252060|ref|YP_004586028.1| - 0.37 9.6 6.6 2.9 6.6 2.3 2.1 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF898) Glyco_hydro_2_N PF02837.13 gi|336252061|ref|YP_004586029.1| - 0.013 15.0 0.2 0.016 14.7 0.2 1.2 1 0 0 1 1 1 0 Glycosyl hydrolases family 2, sugar binding domain TAT_signal PF10518.4 gi|336252061|ref|YP_004586029.1| - 0.2 11.7 2.6 0.52 10.4 1.8 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence TRAM PF01938.15 gi|336252063|ref|YP_004586031.1| - 2.4e-13 49.6 2.3 3.5e-13 49.1 1.6 1.3 1 0 0 1 1 1 1 TRAM domain LAT PF15234.1 gi|336252063|ref|YP_004586031.1| - 0.078 12.4 1.9 0.12 11.7 1.3 1.5 1 1 0 1 1 1 0 Linker for activation of T-cells DNA_pol_B_exo1 PF03104.14 gi|336252064|ref|YP_004586032.1| - 0.00013 20.9 0.1 0.00025 20.0 0.1 1.4 1 0 0 1 1 1 1 DNA polymerase family B, exonuclease domain RNase_H_2 PF13482.1 gi|336252064|ref|YP_004586032.1| - 0.0019 18.0 0.4 0.0086 15.9 0.1 2.2 2 1 0 2 2 2 1 RNase_H superfamily Pro_CA PF00484.14 gi|336252065|ref|YP_004586033.1| - 3.7e-25 88.7 0.0 5.1e-25 88.2 0.0 1.2 1 0 0 1 1 1 1 Carbonic anhydrase ABM PF03992.11 gi|336252066|ref|YP_004586034.1| - 8.6e-17 60.9 4.1 1.1e-16 60.5 2.8 1.2 1 0 0 1 1 1 1 Antibiotic biosynthesis monooxygenase Dabb PF07876.7 gi|336252066|ref|YP_004586034.1| - 0.052 13.9 0.6 0.064 13.7 0.4 1.1 1 0 0 1 1 1 0 Stress responsive A/B Barrel Domain MFS_3 PF05977.8 gi|336252066|ref|YP_004586034.1| - 0.12 10.4 0.0 0.14 10.2 0.0 1.0 1 0 0 1 1 1 0 Transmembrane secretion effector AhpC-TSA PF00578.16 gi|336252067|ref|YP_004586035.1| - 2e-21 75.9 0.0 2.4e-21 75.6 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|336252067|ref|YP_004586035.1| - 1e-18 67.2 0.0 1.2e-18 67.0 0.0 1.0 1 0 0 1 1 1 1 Redoxin Pyr_redox_2 PF07992.9 gi|336252068|ref|YP_004586036.1| - 2.8e-35 122.0 11.9 1.7e-18 67.2 0.0 4.5 3 1 1 4 4 4 3 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|336252068|ref|YP_004586036.1| - 1.1e-21 77.0 6.3 6e-18 65.0 0.5 3.4 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|336252068|ref|YP_004586036.1| - 9.1e-11 41.2 12.8 6.6e-05 21.9 0.9 4.2 3 1 1 4 4 4 3 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|336252068|ref|YP_004586036.1| - 1e-10 42.0 1.3 0.00015 21.9 0.0 3.2 2 1 1 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|336252068|ref|YP_004586036.1| - 1.6e-08 34.5 0.0 3.9e-08 33.3 0.0 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain NAD_binding_8 PF13450.1 gi|336252068|ref|YP_004586036.1| - 1.9e-08 34.2 2.9 0.0022 17.9 0.2 2.6 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|336252068|ref|YP_004586036.1| - 5.1e-07 28.5 5.0 0.065 11.6 0.1 4.1 3 1 1 4 4 4 3 HI0933-like protein 3HCDH_N PF02737.13 gi|336252068|ref|YP_004586036.1| - 7.2e-06 25.7 0.7 7.2e-06 25.7 0.5 2.6 3 0 0 3 3 3 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|336252068|ref|YP_004586036.1| - 0.00012 21.9 0.2 0.00041 20.2 0.1 1.9 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase Lycopene_cycl PF05834.7 gi|336252068|ref|YP_004586036.1| - 0.0026 16.7 3.7 0.78 8.5 0.0 3.2 2 1 1 3 3 3 2 Lycopene cyclase protein 2-Hacid_dh_C PF02826.14 gi|336252068|ref|YP_004586036.1| - 0.0083 15.2 0.0 0.031 13.4 0.0 2.0 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|336252068|ref|YP_004586036.1| - 0.0097 15.2 0.1 0.048 13.0 0.0 2.2 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_10 PF13460.1 gi|336252068|ref|YP_004586036.1| - 0.019 14.9 1.2 0.14 12.1 0.4 2.4 2 0 0 2 2 2 0 NADH(P)-binding Thi4 PF01946.12 gi|336252068|ref|YP_004586036.1| - 0.025 13.6 1.1 1.1 8.2 0.0 2.5 2 1 0 2 2 2 0 Thi4 family NAD_Gly3P_dh_N PF01210.18 gi|336252068|ref|YP_004586036.1| - 0.036 13.7 0.0 0.097 12.3 0.0 1.8 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus GIDA PF01134.17 gi|336252068|ref|YP_004586036.1| - 0.054 12.3 5.8 0.11 11.3 0.4 2.7 2 1 0 2 2 2 0 Glucose inhibited division protein A FAD_oxidored PF12831.2 gi|336252068|ref|YP_004586036.1| - 0.062 12.3 0.2 0.062 12.3 0.2 3.2 2 1 1 3 3 3 0 FAD dependent oxidoreductase TrkA_N PF02254.13 gi|336252068|ref|YP_004586036.1| - 0.1 12.6 1.4 13 5.8 0.2 3.5 3 1 0 3 3 3 0 TrkA-N domain NAD_binding_7 PF13241.1 gi|336252068|ref|YP_004586036.1| - 0.11 12.8 1.0 7.9 6.7 0.1 2.7 2 1 0 2 2 2 0 Putative NAD(P)-binding NAD_binding_9 PF13454.1 gi|336252068|ref|YP_004586036.1| - 0.11 12.2 9.1 16 5.2 0.0 4.2 2 2 2 4 4 4 0 FAD-NAD(P)-binding RNA_POL_M_15KD PF02150.11 gi|336252069|ref|YP_004586037.1| - 1.3e-07 31.2 1.9 1.3e-07 31.2 1.3 2.2 2 0 0 2 2 2 1 RNA polymerases M/15 Kd subunit OrfB_Zn_ribbon PF07282.6 gi|336252069|ref|YP_004586037.1| - 4.8e-05 22.9 6.8 0.0009 18.8 1.3 2.2 2 0 0 2 2 2 2 Putative transposase DNA-binding domain DZR PF12773.2 gi|336252069|ref|YP_004586037.1| - 0.0022 17.7 1.5 0.0022 17.7 1.0 2.6 2 1 0 2 2 2 1 Double zinc ribbon TFIIS_C PF01096.13 gi|336252069|ref|YP_004586037.1| - 0.0089 15.6 0.6 0.0089 15.6 0.4 4.0 4 0 0 4 4 4 1 Transcription factor S-II (TFIIS) DUF3884 PF13024.1 gi|336252069|ref|YP_004586037.1| - 0.061 12.7 0.3 0.095 12.1 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3884) Prok-RING_1 PF14446.1 gi|336252069|ref|YP_004586037.1| - 0.084 12.6 1.1 0.084 12.6 0.8 2.4 3 0 0 3 3 3 0 Prokaryotic RING finger family 1 zf-UBP PF02148.14 gi|336252069|ref|YP_004586037.1| - 0.21 11.6 5.3 3.2 7.9 0.9 2.3 1 1 0 2 2 2 0 Zn-finger in ubiquitin-hydrolases and other protein PhnA_Zn_Ribbon PF08274.7 gi|336252069|ref|YP_004586037.1| - 0.34 10.7 7.4 4.6 7.1 0.1 3.3 3 1 0 3 3 3 0 PhnA Zinc-Ribbon C1_1 PF00130.17 gi|336252069|ref|YP_004586037.1| - 0.74 9.5 5.8 0.96 9.2 2.2 2.2 2 0 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) TF_Zn_Ribbon PF08271.7 gi|336252069|ref|YP_004586037.1| - 0.8 9.0 6.8 19 4.6 0.1 3.2 2 1 0 2 2 2 0 TFIIB zinc-binding Zn_ribbon_recom PF13408.1 gi|336252069|ref|YP_004586037.1| - 0.92 9.8 4.1 4.8 7.5 1.1 2.6 2 1 0 2 2 2 0 Recombinase zinc beta ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|336252069|ref|YP_004586037.1| - 1.1 9.1 8.3 6.5 6.6 0.4 2.9 2 2 1 3 3 3 0 Transposase zinc-ribbon domain DUF2318 PF10080.4 gi|336252069|ref|YP_004586037.1| - 1.2 8.9 5.5 0.98 9.2 0.8 2.4 2 1 0 2 2 2 0 Predicted membrane protein (DUF2318) RecR PF02132.10 gi|336252069|ref|YP_004586037.1| - 1.9 8.0 6.3 0.2 11.1 1.0 1.9 2 0 0 2 2 2 0 RecR protein IBR PF01485.16 gi|336252069|ref|YP_004586037.1| - 2.4 8.0 11.4 0.35 10.7 0.8 2.9 2 2 0 2 2 2 0 IBR domain Nudix_N_2 PF14803.1 gi|336252069|ref|YP_004586037.1| - 2.6 7.8 9.3 50 3.6 3.4 3.3 2 1 0 2 2 2 0 Nudix N-terminal YhfH PF14149.1 gi|336252069|ref|YP_004586037.1| - 2.9 7.7 8.7 12 5.7 0.2 2.7 2 1 0 2 2 2 0 YhfH-like protein zinc-ribbons_6 PF07191.7 gi|336252069|ref|YP_004586037.1| - 5 6.9 6.6 0.72 9.6 0.9 2.2 3 0 0 3 3 3 0 zinc-ribbons PHD_2 PF13831.1 gi|336252069|ref|YP_004586037.1| - 8.9 5.7 9.8 39 3.6 4.2 3.0 2 1 0 2 2 2 0 PHD-finger zf-C4pol PF14260.1 gi|336252069|ref|YP_004586037.1| - 9.1 6.3 8.6 1.6 8.7 2.9 2.0 2 1 0 2 2 2 0 C4-type zinc-finger of DNA polymerase delta Ogr_Delta PF04606.7 gi|336252069|ref|YP_004586037.1| - 9.6 5.9 7.5 26 4.5 1.7 3.1 2 1 0 2 2 2 0 Ogr/Delta-like zinc finger DUF4398 PF14346.1 gi|336252070|ref|YP_004586038.1| - 1.2e-05 25.2 7.7 2.6e-05 24.2 5.3 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4398) Glyco_hydro_42M PF08532.5 gi|336252070|ref|YP_004586038.1| - 0.011 14.8 0.0 0.032 13.3 0.0 1.7 1 0 0 1 1 1 0 Beta-galactosidase trimerisation domain HATPase_c PF02518.21 gi|336252071|ref|YP_004586039.1| - 8.8e-33 112.3 0.0 1.5e-31 108.3 0.0 2.2 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|336252071|ref|YP_004586039.1| - 5.7e-13 48.6 0.1 5.7e-13 48.6 0.1 3.7 3 1 1 4 4 4 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.5 gi|336252071|ref|YP_004586039.1| - 3.9e-11 42.9 0.0 1e-10 41.6 0.0 1.8 1 0 0 1 1 1 1 PAS fold HATPase_c_2 PF13581.1 gi|336252071|ref|YP_004586039.1| - 0.001 18.8 0.1 0.0023 17.7 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.1 gi|336252071|ref|YP_004586039.1| - 0.0013 18.3 0.0 0.0026 17.4 0.0 1.4 1 0 0 1 1 1 1 GHKL domain PAS_9 PF13426.1 gi|336252071|ref|YP_004586039.1| - 0.0021 18.3 0.0 0.01 16.1 0.0 2.2 2 0 0 2 2 2 1 PAS domain Mnd1 PF03962.10 gi|336252071|ref|YP_004586039.1| - 0.016 14.8 0.3 1.7 8.2 0.0 2.3 2 0 0 2 2 2 0 Mnd1 family Rotamase PF00639.16 gi|336252071|ref|YP_004586039.1| - 0.025 15.2 5.1 2.1 9.1 0.2 2.8 2 1 0 2 2 2 0 PPIC-type PPIASE domain PAS_10 PF13596.1 gi|336252071|ref|YP_004586039.1| - 0.031 14.5 0.3 0.11 12.7 0.0 2.2 2 1 0 2 2 1 0 PAS domain Lge1 PF11488.3 gi|336252071|ref|YP_004586039.1| - 0.037 14.2 1.1 7.1 6.9 0.0 2.4 2 0 0 2 2 2 0 Transcriptional regulatory protein LGE1 DUF3618 PF12277.3 gi|336252071|ref|YP_004586039.1| - 0.055 13.5 1.2 0.13 12.3 0.8 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3618) HATPase_c_3 PF13589.1 gi|336252071|ref|YP_004586039.1| - 0.11 12.1 0.0 0.26 10.9 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PilO PF04350.8 gi|336252071|ref|YP_004586039.1| - 0.11 12.3 0.2 0.11 12.3 0.2 2.3 2 0 0 2 2 2 0 Pilus assembly protein, PilO OmpH PF03938.9 gi|336252071|ref|YP_004586039.1| - 0.14 12.0 4.4 0.27 11.1 0.2 2.4 2 0 0 2 2 2 0 Outer membrane protein (OmpH-like) GAS PF13851.1 gi|336252071|ref|YP_004586039.1| - 0.16 11.1 6.3 3.2 6.9 0.3 2.3 2 0 0 2 2 2 0 Growth-arrest specific micro-tubule binding H-kinase_dim PF02895.9 gi|336252071|ref|YP_004586039.1| - 0.18 12.1 3.3 4.4 7.7 0.3 2.9 3 0 0 3 3 3 0 Signal transducing histidine kinase, homodimeric domain bZIP_1 PF00170.16 gi|336252071|ref|YP_004586039.1| - 0.22 11.5 8.1 1.9 8.5 1.0 2.6 2 0 0 2 2 2 0 bZIP transcription factor vATP-synt_E PF01991.13 gi|336252071|ref|YP_004586039.1| - 0.22 10.7 7.1 1.5 8.0 0.5 3.1 3 0 0 3 3 3 0 ATP synthase (E/31 kDa) subunit VitK2_biosynth PF02621.9 gi|336252071|ref|YP_004586039.1| - 0.22 10.6 1.1 0.4 9.8 0.7 1.4 1 0 0 1 1 1 0 Menaquinone biosynthesis FadA PF09403.5 gi|336252071|ref|YP_004586039.1| - 0.25 11.3 7.0 0.28 11.1 0.4 2.5 2 0 0 2 2 2 0 Adhesion protein FadA GrpE PF01025.14 gi|336252071|ref|YP_004586039.1| - 0.3 10.6 6.4 2.5 7.6 0.1 2.5 2 0 0 2 2 2 0 GrpE Ax_dynein_light PF10211.4 gi|336252071|ref|YP_004586039.1| - 0.33 10.7 6.9 0.24 11.2 0.7 2.3 2 0 0 2 2 2 0 Axonemal dynein light chain DUF4298 PF14131.1 gi|336252071|ref|YP_004586039.1| - 0.52 10.2 6.1 1.4 8.8 0.8 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4298) DivIC PF04977.10 gi|336252071|ref|YP_004586039.1| - 0.69 9.4 11.6 1.6 8.2 2.6 2.5 2 0 0 2 2 2 0 Septum formation initiator Snapin_Pallidin PF14712.1 gi|336252071|ref|YP_004586039.1| - 0.99 9.7 5.9 1.4 9.2 1.4 2.4 2 0 0 2 2 2 0 Snapin/Pallidin bZIP_2 PF07716.10 gi|336252071|ref|YP_004586039.1| - 1.1 9.1 20.1 0.48 10.2 2.3 2.7 3 0 0 3 3 2 0 Basic region leucine zipper V_ATPase_I PF01496.14 gi|336252071|ref|YP_004586039.1| - 1.6 6.4 6.8 0.68 7.7 0.4 1.9 1 1 0 2 2 2 0 V-type ATPase 116kDa subunit family DUF904 PF06005.7 gi|336252071|ref|YP_004586039.1| - 2.4 8.4 12.9 0.29 11.4 1.8 2.7 2 1 0 2 2 2 0 Protein of unknown function (DUF904) TMF_DNA_bd PF12329.3 gi|336252071|ref|YP_004586039.1| - 2.5 7.9 10.1 11 5.9 0.5 2.6 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding PAS_4 PF08448.5 gi|336252072|ref|YP_004586040.1| - 6.9e-53 177.3 21.3 1.6e-12 47.4 0.1 6.6 6 0 0 6 6 6 6 PAS fold PAS_9 PF13426.1 gi|336252072|ref|YP_004586040.1| - 5.6e-42 142.3 7.9 7e-09 35.9 0.0 6.7 6 0 0 6 6 6 6 PAS domain PAS_3 PF08447.6 gi|336252072|ref|YP_004586040.1| - 1.9e-31 108.0 6.9 1.6e-15 56.9 0.0 5.7 5 0 0 5 5 5 2 PAS fold HATPase_c PF02518.21 gi|336252072|ref|YP_004586040.1| - 2.7e-29 101.1 0.0 6.2e-29 99.9 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|336252072|ref|YP_004586040.1| - 1.1e-21 75.8 0.2 8e-09 35.0 0.0 6.6 6 0 0 6 6 6 2 PAS domain PAS PF00989.19 gi|336252072|ref|YP_004586040.1| - 1.1e-18 67.0 3.3 0.00059 19.6 0.0 7.0 6 1 0 6 6 6 3 PAS fold PAS_10 PF13596.1 gi|336252072|ref|YP_004586040.1| - 1.7e-13 50.7 0.0 0.013 15.7 0.0 7.1 7 0 0 7 7 7 2 PAS domain HisKA PF00512.20 gi|336252072|ref|YP_004586040.1| - 1.5e-10 40.9 0.1 1.5e-10 40.9 0.1 3.6 4 0 0 4 4 3 1 His Kinase A (phospho-acceptor) domain PAS_7 PF12860.2 gi|336252072|ref|YP_004586040.1| - 1.4e-08 34.7 8.8 7.9e-05 22.6 0.1 6.5 5 1 0 5 5 5 1 PAS fold HATPase_c_5 PF14501.1 gi|336252072|ref|YP_004586040.1| - 4e-07 29.6 0.0 9.4e-07 28.4 0.0 1.6 1 0 0 1 1 1 1 GHKL domain HTH_20 PF12840.2 gi|336252072|ref|YP_004586040.1| - 1e-06 28.4 0.0 2.5e-06 27.1 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|336252072|ref|YP_004586040.1| - 1.3e-06 27.9 0.0 3e-06 26.7 0.0 1.6 1 0 0 1 1 1 1 HTH domain TrmB PF01978.14 gi|336252072|ref|YP_004586040.1| - 1.7e-05 24.4 0.0 4.3e-05 23.1 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.1 gi|336252072|ref|YP_004586040.1| - 4.5e-05 23.1 0.1 0.00017 21.3 0.0 2.0 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_23 PF13384.1 gi|336252072|ref|YP_004586040.1| - 8.8e-05 22.0 0.0 0.0003 20.3 0.0 1.9 1 0 0 1 1 1 1 Homeodomain-like domain HTH_17 PF12728.2 gi|336252072|ref|YP_004586040.1| - 0.004 17.3 0.0 0.012 15.8 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HATPase_c_3 PF13589.1 gi|336252072|ref|YP_004586040.1| - 0.0044 16.6 0.0 0.01 15.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FaeA PF04703.7 gi|336252072|ref|YP_004586040.1| - 0.0054 16.8 0.0 0.013 15.6 0.0 1.6 1 0 0 1 1 1 1 FaeA-like protein HTH_29 PF13551.1 gi|336252072|ref|YP_004586040.1| - 0.015 15.4 0.0 0.048 13.8 0.0 1.8 1 0 0 1 1 1 0 Winged helix-turn helix HTH_36 PF13730.1 gi|336252072|ref|YP_004586040.1| - 0.024 14.7 0.0 0.044 13.9 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain GerE PF00196.14 gi|336252072|ref|YP_004586040.1| - 0.037 13.3 0.0 0.079 12.2 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family Fe_dep_repress PF01325.14 gi|336252072|ref|YP_004586040.1| - 0.038 13.9 0.0 0.087 12.7 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_22 PF13309.1 gi|336252072|ref|YP_004586040.1| - 0.041 13.6 0.0 0.11 12.3 0.0 1.7 1 0 0 1 1 1 0 HTH domain HTH_7 PF02796.10 gi|336252072|ref|YP_004586040.1| - 0.044 13.6 0.0 0.13 12.1 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase Sigma70_r4_2 PF08281.7 gi|336252072|ref|YP_004586040.1| - 0.045 13.2 0.0 0.14 11.6 0.0 1.8 1 0 0 1 1 1 0 Sigma-70, region 4 Crp PF00325.15 gi|336252072|ref|YP_004586040.1| - 0.11 11.9 0.0 0.26 10.8 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, crp family PAP2 PF01569.16 gi|336252073|ref|YP_004586041.1| - 7.6 6.2 17.3 71 3.0 12.0 2.5 1 1 0 1 1 1 0 PAP2 superfamily ABC2_membrane PF01061.19 gi|336252074|ref|YP_004586042.1| - 1.3e-30 106.1 18.0 1.7e-30 105.7 12.5 1.1 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|336252074|ref|YP_004586042.1| - 8.1e-18 64.5 16.8 8.1e-18 64.5 11.6 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.22 gi|336252075|ref|YP_004586043.1| - 4.2e-30 104.8 0.0 6e-30 104.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|336252075|ref|YP_004586043.1| - 3.3e-16 60.1 0.0 5.5e-14 52.8 0.0 2.1 1 1 0 1 1 1 1 AAA domain DUF4162 PF13732.1 gi|336252075|ref|YP_004586043.1| - 0.00012 22.4 0.0 0.00025 21.4 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_16 PF13191.1 gi|336252075|ref|YP_004586043.1| - 0.00021 21.3 0.0 0.00047 20.1 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|336252075|ref|YP_004586043.1| - 0.00088 18.7 0.5 0.0021 17.5 0.4 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|336252075|ref|YP_004586043.1| - 0.021 15.1 0.0 0.033 14.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|336252075|ref|YP_004586043.1| - 0.023 14.0 1.4 0.37 10.1 0.1 2.6 1 1 2 3 3 3 0 AAA domain SbcCD_C PF13558.1 gi|336252075|ref|YP_004586043.1| - 0.025 14.4 0.0 0.073 12.9 0.0 1.9 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA PF00004.24 gi|336252075|ref|YP_004586043.1| - 0.053 13.7 0.0 0.69 10.1 0.0 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) G-alpha PF00503.15 gi|336252075|ref|YP_004586043.1| - 0.22 10.1 0.0 0.29 9.7 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit HTH_10 PF04967.7 gi|336252076|ref|YP_004586044.1| - 1.6e-18 66.0 0.1 2.4e-18 65.4 0.1 1.3 1 0 0 1 1 1 1 HTH DNA binding domain HTH_AsnC-type PF13404.1 gi|336252076|ref|YP_004586044.1| - 0.0078 15.7 0.9 0.18 11.3 0.5 2.3 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.2 gi|336252076|ref|YP_004586044.1| - 0.011 15.4 0.1 0.023 14.3 0.1 1.5 1 0 0 1 1 1 0 MarR family HTH_24 PF13412.1 gi|336252076|ref|YP_004586044.1| - 0.069 12.5 0.0 0.33 10.3 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding peroxidase PF00141.18 gi|336252077|ref|YP_004586045.1| - 5.4e-96 320.5 0.0 1.1e-53 182.0 0.0 2.2 2 0 0 2 2 2 2 Peroxidase DUF4578 PF15147.1 gi|336252077|ref|YP_004586045.1| - 0.061 13.7 0.0 0.12 12.8 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4578) Glyco_hydro_3 PF00933.16 gi|336252078|ref|YP_004586046.1| - 1e-80 270.9 0.0 1.3e-80 270.5 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain Glyco_hydro_3_C PF01915.17 gi|336252078|ref|YP_004586046.1| - 2.4e-55 187.5 0.0 4.5e-55 186.6 0.0 1.5 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 C-terminal domain Fn3-like PF14310.1 gi|336252078|ref|YP_004586046.1| - 1.1e-17 63.6 0.1 2.9e-17 62.3 0.0 1.8 1 0 0 1 1 1 1 Fibronectin type III-like domain Transglut_C PF00927.17 gi|336252078|ref|YP_004586046.1| - 0.026 14.5 0.0 0.21 11.6 0.0 2.3 2 0 0 2 2 2 0 Transglutaminase family, C-terminal ig like domain CARDB PF07705.6 gi|336252078|ref|YP_004586046.1| - 0.077 13.0 0.0 0.2 11.7 0.0 1.6 1 0 0 1 1 1 0 CARDB Glyco_hydro_3 PF00933.16 gi|336252080|ref|YP_004586048.1| - 2.3e-81 273.0 0.0 3.3e-81 272.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain Glyco_hydro_3_C PF01915.17 gi|336252080|ref|YP_004586048.1| - 1.9e-63 214.0 1.1 1.6e-62 211.0 0.2 2.5 2 1 0 2 2 2 1 Glycosyl hydrolase family 3 C-terminal domain Fn3-like PF14310.1 gi|336252080|ref|YP_004586048.1| - 1.1e-21 76.5 0.3 2.2e-21 75.5 0.2 1.6 1 0 0 1 1 1 1 Fibronectin type III-like domain Usp PF00582.21 gi|336252081|ref|YP_004586049.1| - 8.8e-22 77.8 3.4 1.9e-21 76.7 2.3 1.5 1 1 0 1 1 1 1 Universal stress protein family MFS_1 PF07690.11 gi|336252082|ref|YP_004586050.1| - 8.5e-44 149.6 50.4 1.4e-35 122.6 17.6 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|336252082|ref|YP_004586050.1| - 2e-09 36.5 36.5 7.8e-08 31.3 8.5 2.1 1 1 1 2 2 2 2 Sugar (and other) transporter MFS_2 PF13347.1 gi|336252082|ref|YP_004586050.1| - 2e-08 33.0 32.6 7.7e-05 21.2 8.2 3.1 1 1 2 3 3 3 2 MFS/sugar transport protein MFS_3 PF05977.8 gi|336252082|ref|YP_004586050.1| - 0.19 9.7 26.9 2.1 6.3 18.6 2.3 1 1 0 1 1 1 0 Transmembrane secretion effector DUF1467 PF07330.7 gi|336252082|ref|YP_004586050.1| - 0.47 10.2 0.0 0.47 10.2 0.0 3.6 4 1 1 5 5 5 0 Protein of unknown function (DUF1467) DUF4188 PF13826.1 gi|336252083|ref|YP_004586051.1| - 5.8e-09 36.0 0.1 6.8e-09 35.8 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4188) ABM PF03992.11 gi|336252083|ref|YP_004586051.1| - 7.3e-06 25.9 0.2 9.9e-06 25.5 0.1 1.2 1 0 0 1 1 1 1 Antibiotic biosynthesis monooxygenase DUF3291 PF11695.3 gi|336252083|ref|YP_004586051.1| - 0.0072 15.7 0.8 0.022 14.1 0.6 1.7 1 1 0 1 1 1 1 Domain of unknown function (DUF3291) DUF4380 PF14315.1 gi|336252083|ref|YP_004586051.1| - 0.013 14.7 0.1 0.015 14.4 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4380) DUF1330 PF07045.6 gi|336252083|ref|YP_004586051.1| - 0.068 13.0 0.3 4 7.3 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1330) D123 PF07065.9 gi|336252083|ref|YP_004586051.1| - 0.13 11.3 0.0 0.5 9.3 0.0 1.7 1 1 1 2 2 2 0 D123 Cys_Met_Meta_PP PF01053.15 gi|336252084|ref|YP_004586052.1| - 2e-128 427.9 0.0 2.4e-128 427.7 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|336252084|ref|YP_004586052.1| - 2.2e-08 33.5 0.5 7.7e-08 31.7 0.3 1.8 1 1 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|336252084|ref|YP_004586052.1| - 1e-05 24.8 0.0 1.8e-05 24.0 0.0 1.5 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.16 gi|336252084|ref|YP_004586052.1| - 0.00015 20.8 0.0 0.00021 20.3 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|336252084|ref|YP_004586052.1| - 0.00094 18.0 0.0 0.0044 15.8 0.0 2.0 2 1 1 3 3 3 1 Aminotransferase class-V DUF21 PF01595.15 gi|336252085|ref|YP_004586053.1| - 8.8e-28 96.8 2.5 1.3e-27 96.2 1.7 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF21 CBS PF00571.23 gi|336252085|ref|YP_004586053.1| - 1.9e-10 40.3 0.3 0.00016 21.3 0.0 2.4 1 1 1 2 2 2 2 CBS domain malic PF00390.14 gi|336252085|ref|YP_004586053.1| - 0.0018 17.8 0.0 0.0099 15.4 0.0 2.0 2 0 0 2 2 2 1 Malic enzyme, N-terminal domain DUF21 PF01595.15 gi|336252086|ref|YP_004586054.1| - 4.6e-29 101.0 0.0 6.5e-29 100.5 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF21 CBS PF00571.23 gi|336252086|ref|YP_004586054.1| - 1.2e-10 40.9 0.3 2.9e-06 26.9 0.0 2.3 2 0 0 2 2 2 2 CBS domain Geminin PF07412.7 gi|336252086|ref|YP_004586054.1| - 0.28 10.8 1.2 1.9 8.1 0.2 2.0 2 0 0 2 2 2 0 Geminin Usp PF00582.21 gi|336252087|ref|YP_004586055.1| - 2.5e-27 95.7 0.5 2.9e-27 95.5 0.3 1.0 1 0 0 1 1 1 1 Universal stress protein family AP_endonuc_2 PF01261.19 gi|336252087|ref|YP_004586055.1| - 0.0012 18.1 0.1 0.0017 17.6 0.0 1.1 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel PAS_9 PF13426.1 gi|336252088|ref|YP_004586056.1| - 5.3e-60 200.2 4.4 2.3e-22 79.3 0.1 4.7 4 1 1 5 5 5 4 PAS domain PAS_4 PF08448.5 gi|336252088|ref|YP_004586056.1| - 2e-41 140.4 12.0 1.4e-12 47.6 0.1 4.5 4 0 0 4 4 4 4 PAS fold PAS PF00989.19 gi|336252088|ref|YP_004586056.1| - 4.7e-36 123.0 3.6 7.5e-14 51.4 0.1 4.5 4 0 0 4 4 4 4 PAS fold HATPase_c PF02518.21 gi|336252088|ref|YP_004586056.1| - 3.9e-28 97.3 0.0 2.4e-27 94.8 0.0 2.4 3 0 0 3 3 3 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.6 gi|336252088|ref|YP_004586056.1| - 2e-21 75.8 7.8 2.3e-06 27.5 0.2 4.9 5 0 0 5 5 5 4 PAS fold PAS_10 PF13596.1 gi|336252088|ref|YP_004586056.1| - 9.5e-14 51.5 0.2 0.00038 20.6 0.0 4.3 4 0 0 4 4 4 3 PAS domain PAS_7 PF12860.2 gi|336252088|ref|YP_004586056.1| - 1.7e-13 50.5 5.3 8.6e-05 22.5 0.1 4.8 4 1 0 4 4 4 2 PAS fold PAS_8 PF13188.1 gi|336252088|ref|YP_004586056.1| - 2.1e-13 49.6 0.1 4.3e-05 23.2 0.0 4.0 3 0 0 3 3 3 3 PAS domain HisKA PF00512.20 gi|336252088|ref|YP_004586056.1| - 1.5e-10 40.8 0.1 1.5e-10 40.8 0.0 5.3 4 1 1 5 5 5 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.1 gi|336252088|ref|YP_004586056.1| - 1.1e-05 24.9 0.0 2.5e-05 23.9 0.0 1.6 1 0 0 1 1 1 1 GHKL domain Atg14 PF10186.4 gi|336252088|ref|YP_004586056.1| - 0.01 14.8 1.4 0.27 10.1 0.0 2.8 3 0 0 3 3 3 0 UV radiation resistance protein and autophagy-related subunit 14 YqaJ PF09588.5 gi|336252088|ref|YP_004586056.1| - 0.022 14.7 0.6 0.89 9.5 0.1 3.2 2 1 0 2 2 2 0 YqaJ-like viral recombinase domain TMV_coat PF00721.16 gi|336252088|ref|YP_004586056.1| - 0.043 13.7 0.0 0.15 11.9 0.0 1.9 1 0 0 1 1 1 0 Virus coat protein (TMV like) BBS2_C PF14782.1 gi|336252088|ref|YP_004586056.1| - 0.065 11.7 0.1 0.065 11.7 0.1 1.6 2 0 0 2 2 2 0 Ciliary BBSome complex subunit 2, C-terminal PMC2NT PF08066.7 gi|336252088|ref|YP_004586056.1| - 0.07 13.4 2.7 0.17 12.2 0.3 2.8 2 1 0 2 2 2 0 PMC2NT (NUC016) domain DUF2884 PF11101.3 gi|336252088|ref|YP_004586056.1| - 0.099 12.0 4.1 1.7 7.9 0.2 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2884) Noelin-1 PF12308.3 gi|336252088|ref|YP_004586056.1| - 0.21 11.4 0.0 0.21 11.4 0.0 2.9 3 0 0 3 3 3 0 Neurogenesis glycoprotein IncA PF04156.9 gi|336252088|ref|YP_004586056.1| - 1.4 8.4 11.2 3.7 7.0 0.3 3.4 3 0 0 3 3 3 0 IncA protein DUF2120 PF09893.4 gi|336252088|ref|YP_004586056.1| - 1.6 8.6 5.2 5.9 6.8 0.2 3.4 4 0 0 4 4 4 0 Uncharacterized protein conserved in archaea (DUF2120) DUF4164 PF13747.1 gi|336252088|ref|YP_004586056.1| - 3.2 7.9 15.7 1.2 9.3 1.0 3.5 3 0 0 3 3 2 0 Domain of unknown function (DUF4164) V_ATPase_I PF01496.14 gi|336252088|ref|YP_004586056.1| - 4 5.1 9.8 4.5 5.0 3.4 2.5 2 1 0 2 2 2 0 V-type ATPase 116kDa subunit family Beta-lactamase PF00144.19 gi|336252089|ref|YP_004586057.1| - 4e-57 193.7 4.0 6.7e-57 192.9 2.3 1.6 2 0 0 2 2 2 1 Beta-lactamase GRIM-19 PF06212.7 gi|336252089|ref|YP_004586057.1| - 0.025 14.2 0.0 0.047 13.4 0.0 1.3 1 0 0 1 1 1 0 GRIM-19 protein Methyltransf_11 PF08241.7 gi|336252090|ref|YP_004586058.1| - 3.7e-23 81.8 0.0 7e-23 80.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|336252090|ref|YP_004586058.1| - 3.7e-19 68.9 0.0 5.2e-19 68.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|336252090|ref|YP_004586058.1| - 6.3e-19 68.0 0.0 1.2e-18 67.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|336252090|ref|YP_004586058.1| - 7.9e-16 57.8 0.0 1e-15 57.5 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_25 PF13649.1 gi|336252090|ref|YP_004586058.1| - 2e-12 47.3 0.0 3.4e-12 46.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|336252090|ref|YP_004586058.1| - 5e-12 46.1 0.0 1e-11 45.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|336252090|ref|YP_004586058.1| - 5.1e-12 46.3 0.0 9.9e-12 45.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|336252090|ref|YP_004586058.1| - 6.5e-09 35.8 0.1 4.2e-08 33.2 0.0 2.1 2 1 0 2 2 2 1 Methyltransferase domain TehB PF03848.9 gi|336252090|ref|YP_004586058.1| - 4.7e-05 22.6 0.0 6.4e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB MTS PF05175.9 gi|336252090|ref|YP_004586058.1| - 9e-05 21.9 0.0 0.00015 21.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain MetW PF07021.7 gi|336252090|ref|YP_004586058.1| - 9.2e-05 21.9 0.0 0.00021 20.7 0.0 1.5 1 1 1 2 2 2 1 Methionine biosynthesis protein MetW CMAS PF02353.15 gi|336252090|ref|YP_004586058.1| - 0.00011 21.3 0.0 0.00014 21.0 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase UPF0020 PF01170.13 gi|336252090|ref|YP_004586058.1| - 0.00086 18.9 0.0 0.0016 18.0 0.0 1.4 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 PCMT PF01135.14 gi|336252090|ref|YP_004586058.1| - 0.018 14.5 0.0 0.027 13.9 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_29 PF03141.11 gi|336252090|ref|YP_004586058.1| - 0.068 11.4 0.0 0.075 11.3 0.0 1.2 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase HTH_20 PF12840.2 gi|336252091|ref|YP_004586059.1| - 3.7e-07 29.8 0.0 8.5e-07 28.6 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain GFA PF04828.9 gi|336252091|ref|YP_004586059.1| - 2.5e-06 27.3 0.4 3.1e-05 23.8 0.1 2.3 1 1 1 2 2 2 1 Glutathione-dependent formaldehyde-activating enzyme zf-HYPF PF07503.7 gi|336252091|ref|YP_004586059.1| - 0.028 13.8 0.1 0.028 13.8 0.0 3.1 3 0 0 3 3 3 0 HypF finger HTH_5 PF01022.15 gi|336252091|ref|YP_004586059.1| - 0.072 12.7 0.0 2.6 7.7 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family Elf1 PF05129.8 gi|336252091|ref|YP_004586059.1| - 0.082 12.6 1.0 2.5 7.8 0.1 2.6 2 0 0 2 2 2 0 Transcription elongation factor Elf1 like Zn_Tnp_IS91 PF14319.1 gi|336252091|ref|YP_004586059.1| - 0.15 11.5 1.5 0.24 10.9 0.0 1.9 2 0 0 2 2 2 0 Transposase zinc-binding domain Lar_restr_allev PF14354.1 gi|336252091|ref|YP_004586059.1| - 0.58 10.5 6.8 1.1 9.6 0.3 2.7 1 1 1 2 2 2 0 Restriction alleviation protein Lar NinF PF05810.7 gi|336252091|ref|YP_004586059.1| - 0.61 9.9 2.8 6.1 6.7 1.0 3.0 2 1 0 2 2 2 0 NinF protein zinc_ribbon_2 PF13240.1 gi|336252091|ref|YP_004586059.1| - 0.9 9.1 4.2 0.95 9.0 0.0 2.9 4 0 0 4 4 4 0 zinc-ribbon domain CpXC PF14353.1 gi|336252091|ref|YP_004586059.1| - 1 9.3 5.4 13 5.7 0.1 3.0 2 1 1 3 3 3 0 CpXC protein DZR PF12773.2 gi|336252091|ref|YP_004586059.1| - 1.2 9.0 7.3 40 4.1 5.1 2.7 1 1 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|336252093|ref|YP_004586061.1| - 0.0075 15.4 0.8 0.96 8.7 0.1 2.3 2 0 0 2 2 2 2 zinc-ribbon domain DUF2562 PF10814.3 gi|336252093|ref|YP_004586061.1| - 0.026 14.4 0.1 0.03 14.2 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2562) DUF2072 PF09845.4 gi|336252093|ref|YP_004586061.1| - 0.034 14.0 0.5 0.13 12.2 0.0 1.9 1 1 1 2 2 2 0 Zn-ribbon containing protein (DUF2072) BAG PF02179.11 gi|336252093|ref|YP_004586061.1| - 0.047 13.8 0.5 0.071 13.2 0.4 1.2 1 0 0 1 1 1 0 BAG domain DNA_ligase_ZBD PF03119.11 gi|336252093|ref|YP_004586061.1| - 0.097 12.3 0.9 0.24 11.1 0.6 1.7 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain Nudix_N_2 PF14803.1 gi|336252093|ref|YP_004586061.1| - 0.17 11.5 0.4 0.17 11.5 0.3 2.5 3 0 0 3 3 3 0 Nudix N-terminal DUF2387 PF09526.5 gi|336252093|ref|YP_004586061.1| - 0.93 9.4 2.7 2.3 8.1 0.1 2.3 1 1 1 2 2 2 0 Probable metal-binding protein (DUF2387) PKD PF00801.15 gi|336252094|ref|YP_004586062.1| - 1.3e-24 85.6 14.9 2.8e-12 46.1 2.7 2.8 2 0 0 2 2 2 2 PKD domain RicinB_lectin_2 PF14200.1 gi|336252094|ref|YP_004586062.1| - 1.5e-21 76.7 1.6 5.4e-13 49.2 0.1 4.3 4 1 1 5 5 5 2 Ricin-type beta-trefoil lectin domain-like FG-GAP PF01839.18 gi|336252094|ref|YP_004586062.1| - 1e-11 44.1 14.0 0.0012 18.4 1.4 5.1 4 0 0 4 4 4 3 FG-GAP repeat VCBS PF13517.1 gi|336252094|ref|YP_004586062.1| - 7.2e-09 35.8 5.8 0.09 13.1 0.1 5.3 4 1 1 5 5 5 4 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella Ricin_B_lectin PF00652.17 gi|336252094|ref|YP_004586062.1| - 0.00063 19.7 0.0 0.01 15.8 0.0 2.5 2 0 0 2 2 2 1 Ricin-type beta-trefoil lectin domain GOLD_2 PF13897.1 gi|336252094|ref|YP_004586062.1| - 0.002 18.3 0.2 3.6 7.8 0.0 2.8 2 1 0 2 2 2 2 Golgi-dynamics membrane-trafficking PQQ PF01011.16 gi|336252094|ref|YP_004586062.1| - 0.0038 16.6 0.0 0.14 11.7 0.0 3.2 2 0 0 2 2 2 1 PQQ enzyme repeat ChitinaseA_N PF08329.5 gi|336252094|ref|YP_004586062.1| - 0.0048 16.6 0.4 0.029 14.1 0.1 2.3 2 0 0 2 2 2 1 Chitinase A, N-terminal domain TcdB_toxin_midN PF12256.3 gi|336252094|ref|YP_004586062.1| - 0.0089 15.4 6.8 6.7 6.1 0.0 4.0 4 0 0 4 4 4 2 Insecticide toxin TcdB middle/N-terminal region Big_3_4 PF13754.1 gi|336252094|ref|YP_004586062.1| - 0.1 12.9 35.2 0.076 13.3 3.7 5.8 5 2 2 7 7 7 0 Bacterial Ig-like domain (group 3) FrhB_FdhB_C PF04432.8 gi|336252095|ref|YP_004586063.1| - 1.9e-30 105.4 0.0 1.9e-30 105.4 0.0 1.6 2 0 0 2 2 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.8 gi|336252095|ref|YP_004586063.1| - 3.6e-23 81.2 0.0 6.3e-23 80.4 0.0 1.4 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4 PF00037.22 gi|336252095|ref|YP_004586063.1| - 4.4e-10 38.7 18.1 8.7e-07 28.2 3.4 3.4 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|336252095|ref|YP_004586063.1| - 1.2e-09 38.4 28.8 2.2e-06 27.9 7.7 3.2 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|336252095|ref|YP_004586063.1| - 4.2e-09 36.1 7.5 4.2e-09 36.1 5.2 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|336252095|ref|YP_004586063.1| - 5.2e-09 35.7 13.4 1.2e-07 31.3 8.1 3.1 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|336252095|ref|YP_004586063.1| - 8.3e-09 35.5 11.3 2.9e-08 33.8 5.8 2.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|336252095|ref|YP_004586063.1| - 1.7e-08 35.1 6.2 0.0045 17.6 0.6 3.6 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_18 PF13746.1 gi|336252095|ref|YP_004586063.1| - 2.7e-07 30.9 8.7 0.0048 17.2 0.9 3.1 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|336252095|ref|YP_004586063.1| - 1e-06 28.2 19.4 2.9e-05 23.7 2.7 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|336252095|ref|YP_004586063.1| - 6.5e-06 26.0 21.8 0.00086 19.4 2.6 3.5 3 1 0 3 3 3 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|336252095|ref|YP_004586063.1| - 9.3e-06 25.9 3.3 0.024 14.9 0.1 3.0 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|336252095|ref|YP_004586063.1| - 1.9e-05 24.3 4.2 1.9e-05 24.3 2.9 3.2 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_8 PF13183.1 gi|336252095|ref|YP_004586063.1| - 2.4e-05 24.2 9.5 0.0057 16.6 8.0 2.8 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|336252095|ref|YP_004586063.1| - 0.0036 17.8 1.9 0.0036 17.8 1.3 3.6 2 2 1 3 3 3 1 4Fe-4S single cluster domain TonB_2 PF13103.1 gi|336252095|ref|YP_004586063.1| - 0.026 14.5 0.0 0.06 13.3 0.0 1.5 1 0 0 1 1 1 0 TonB C terminal Fer4_13 PF13370.1 gi|336252095|ref|YP_004586063.1| - 0.13 12.7 15.9 0.14 12.5 1.3 3.3 3 0 0 3 3 3 0 4Fe-4S single cluster domain Fer4_11 PF13247.1 gi|336252095|ref|YP_004586063.1| - 0.19 11.6 5.3 0.13 12.1 2.0 2.0 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|336252095|ref|YP_004586063.1| - 1.2 9.8 24.1 0.06 13.9 3.7 3.4 3 0 0 3 3 3 0 4Fe-4S binding domain