#                                                                           --- full sequence ---- --- best 1 domain ---- --- domain number estimation ----
# target name        accession  query name                       accession    E-value  score  bias   E-value  score  bias   exp reg clu  ov env dom rep inc description of target
#------------------- ----------             -------------------- ---------- --------- ------ ----- --------- ------ -----   --- --- --- --- --- --- --- --- ---------------------
IclR	PF01614.18	gi|336251751|ref|YP_004585719.1|	-	3.5e-28	98.0	0.2	8.6e-28	96.7	0.0	1.6	2	0	0	2	2	2	1	Bacterial	transcriptional	regulator
HTH_IclR	PF09339.10	gi|336251751|ref|YP_004585719.1|	-	1.2e-10	41.0	0.0	2.4e-10	40.0	0.0	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_5	PF01022.20	gi|336251751|ref|YP_004585719.1|	-	3.5e-08	33.2	0.0	6.4e-08	32.3	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR	PF01047.22	gi|336251751|ref|YP_004585719.1|	-	4.4e-07	29.7	0.0	2e-06	27.6	0.1	2.0	2	0	0	2	2	2	1	MarR	family
MarR_2	PF12802.7	gi|336251751|ref|YP_004585719.1|	-	6.7e-07	29.1	0.1	2.4e-06	27.4	0.0	2.0	2	0	0	2	2	2	1	MarR	family
HTH_24	PF13412.6	gi|336251751|ref|YP_004585719.1|	-	2.1e-06	27.2	0.0	3.8e-06	26.4	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.7	gi|336251751|ref|YP_004585719.1|	-	3.1e-05	24.0	0.1	6.5e-05	22.9	0.1	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_11	PF08279.12	gi|336251751|ref|YP_004585719.1|	-	0.0001	22.2	0.2	0.00029	20.7	0.2	1.8	1	0	0	1	1	1	1	HTH	domain
TrmB	PF01978.19	gi|336251751|ref|YP_004585719.1|	-	0.00018	21.3	0.1	0.001	18.9	0.0	2.2	2	1	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_10	PF04967.12	gi|336251751|ref|YP_004585719.1|	-	0.0024	17.6	0.0	0.005	16.6	0.0	1.5	1	0	0	1	1	1	1	HTH	DNA	binding	domain
B-block_TFIIIC	PF04182.12	gi|336251751|ref|YP_004585719.1|	-	0.0034	17.5	0.0	0.0052	16.9	0.0	1.5	1	0	0	1	1	1	1	B-block	binding	subunit	of	TFIIIC
HTH_23	PF13384.6	gi|336251751|ref|YP_004585719.1|	-	0.0039	16.9	0.0	0.011	15.5	0.0	1.7	2	0	0	2	2	1	1	Homeodomain-like	domain
HTH_27	PF13463.6	gi|336251751|ref|YP_004585719.1|	-	0.0045	17.5	0.2	0.02	15.4	0.1	2.1	2	0	0	2	2	1	1	Winged	helix	DNA-binding	domain
Rrf2	PF02082.20	gi|336251751|ref|YP_004585719.1|	-	0.0053	17.1	0.1	0.016	15.6	0.1	1.8	2	0	0	2	2	1	1	Transcriptional	regulator
RepL	PF05732.11	gi|336251751|ref|YP_004585719.1|	-	0.006	16.0	0.0	0.011	15.2	0.0	1.5	1	0	0	1	1	1	1	Firmicute	plasmid	replication	protein	(RepL)
RNA_lig_T4_1	PF09511.10	gi|336251751|ref|YP_004585719.1|	-	0.0088	15.9	0.0	0.016	15.1	0.0	1.3	1	0	0	1	1	1	1	RNA	ligase
HTH_DeoR	PF08220.12	gi|336251751|ref|YP_004585719.1|	-	0.025	14.3	0.1	0.065	13.0	0.1	1.7	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
Mga	PF05043.13	gi|336251751|ref|YP_004585719.1|	-	0.039	14.5	0.1	1.6	9.4	0.0	2.5	2	0	0	2	2	2	0	Mga	helix-turn-helix	domain
DUF3489	PF11994.8	gi|336251751|ref|YP_004585719.1|	-	0.039	14.0	0.1	0.07	13.2	0.1	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3489)
GerE	PF00196.19	gi|336251751|ref|YP_004585719.1|	-	0.046	13.3	0.0	0.13	11.9	0.0	1.7	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	luxR	family
Penicillinase_R	PF03965.16	gi|336251751|ref|YP_004585719.1|	-	0.051	13.9	0.0	0.35	11.2	0.0	2.3	2	0	0	2	2	2	0	Penicillinase	repressor
UPF0122	PF04297.14	gi|336251751|ref|YP_004585719.1|	-	0.061	13.6	0.6	1.2	9.4	0.0	2.8	3	0	0	3	3	3	0	Putative	helix-turn-helix	protein,	YlxM	/	p13	like
Fe_dep_repress	PF01325.19	gi|336251751|ref|YP_004585719.1|	-	0.062	13.5	0.1	0.21	11.8	0.0	1.9	2	0	0	2	2	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
CPSase_sm_chain	PF00988.22	gi|336251751|ref|YP_004585719.1|	-	0.069	13.0	0.1	0.23	11.3	0.0	1.8	2	0	0	2	2	2	0	Carbamoyl-phosphate	synthase	small	chain,	CPSase	domain
HTH_40	PF14493.6	gi|336251751|ref|YP_004585719.1|	-	0.11	13.0	0.1	0.31	11.5	0.0	1.9	2	0	0	2	2	1	0	Helix-turn-helix	domain
HTH_26	PF13443.6	gi|336251751|ref|YP_004585719.1|	-	0.12	12.8	0.1	0.24	11.9	0.1	1.4	1	0	0	1	1	1	0	Cro/C1-type	HTH	DNA-binding	domain
LexA_DNA_bind	PF01726.16	gi|336251751|ref|YP_004585719.1|	-	0.13	12.1	0.1	0.34	10.7	0.0	1.8	1	1	0	1	1	1	0	LexA	DNA	binding	domain
RDD	PF06271.12	gi|336251753|ref|YP_004585721.1|	-	5.4e-15	55.8	3.4	6.3e-15	55.6	3.4	1.1	1	0	0	1	1	1	1	RDD	family
TraP	PF07296.11	gi|336251753|ref|YP_004585721.1|	-	0.05	12.8	0.1	0.081	12.1	0.1	1.4	1	0	0	1	1	1	0	TraP	protein
EII-Sor	PF03609.14	gi|336251754|ref|YP_004585722.1|	-	0.0067	15.9	1.2	0.0067	15.9	1.2	1.6	2	0	0	2	2	2	1	PTS	system	sorbose-specific	iic	component
MASE1	PF05231.14	gi|336251754|ref|YP_004585722.1|	-	0.055	12.6	10.0	0.032	13.4	2.6	2.3	1	1	0	2	2	2	0	MASE1
DDE_Tnp_1	PF01609.21	gi|336251755|ref|YP_004585723.1|	-	8e-16	58.3	5.9	6.6e-15	55.3	5.9	2.1	1	1	0	1	1	1	1	Transposase	DDE	domain
DUF772	PF05598.11	gi|336251755|ref|YP_004585723.1|	-	0.00018	21.4	0.1	0.00053	19.9	0.1	1.8	1	0	0	1	1	1	1	Transposase	domain	(DUF772)
DDE_Tnp_1_3	PF13612.6	gi|336251755|ref|YP_004585723.1|	-	0.00022	21.3	0.1	0.00034	20.6	0.1	1.3	1	0	0	1	1	1	1	Transposase	DDE	domain
DDE_Tnp_1_6	PF13751.6	gi|336251755|ref|YP_004585723.1|	-	0.0096	16.2	0.7	0.024	14.8	0.4	1.9	2	0	0	2	2	2	1	Transposase	DDE	domain
DDE_Tnp_1_2	PF13586.6	gi|336251755|ref|YP_004585723.1|	-	0.027	14.9	1.0	0.075	13.4	1.0	1.8	1	1	0	1	1	1	0	Transposase	DDE	domain
HrcA_DNA-bdg	PF03444.15	gi|336251756|ref|YP_004585724.1|	-	5.7e-27	93.2	0.0	8e-27	92.7	0.0	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix	transcription	repressor,	HrcA	DNA-binding
Rrf2	PF02082.20	gi|336251756|ref|YP_004585724.1|	-	2.6e-06	27.7	0.0	5.1e-06	26.8	0.0	1.4	1	0	0	1	1	1	1	Transcriptional	regulator
HTH_11	PF08279.12	gi|336251756|ref|YP_004585724.1|	-	4.2e-06	26.6	0.0	8.6e-06	25.6	0.0	1.5	1	0	0	1	1	1	1	HTH	domain
HTH_20	PF12840.7	gi|336251756|ref|YP_004585724.1|	-	1.6e-05	24.9	0.0	3e-05	24.0	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|336251756|ref|YP_004585724.1|	-	0.0012	18.6	0.2	0.0035	17.2	0.1	1.8	2	0	0	2	2	2	1	MarR	family
TrmB	PF01978.19	gi|336251756|ref|YP_004585724.1|	-	0.0022	17.9	0.0	0.0066	16.3	0.0	1.9	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
Phage_rep_org_N	PF09681.10	gi|336251756|ref|YP_004585724.1|	-	0.019	14.9	0.0	0.036	14.0	0.0	1.4	1	0	0	1	1	1	0	N-terminal	phage	replisome	organiser	(Phage_rep_org_N)
HTH_24	PF13412.6	gi|336251756|ref|YP_004585724.1|	-	0.036	13.6	0.0	0.069	12.7	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
LexA_DNA_bind	PF01726.16	gi|336251756|ref|YP_004585724.1|	-	0.061	13.1	0.1	0.11	12.3	0.1	1.3	1	0	0	1	1	1	0	LexA	DNA	binding	domain
Dimerisation2	PF16864.5	gi|336251756|ref|YP_004585724.1|	-	0.068	13.2	0.0	0.11	12.5	0.0	1.3	1	0	0	1	1	1	0	Dimerisation	domain
HTH_IclR	PF09339.10	gi|336251756|ref|YP_004585724.1|	-	0.073	12.9	0.1	0.12	12.2	0.1	1.4	1	0	0	1	1	1	0	IclR	helix-turn-helix	domain
Amidohydro_1	PF01979.20	gi|336251757|ref|YP_004585725.1|	-	1.3e-63	215.4	0.0	1.5e-63	215.2	0.0	1.0	1	0	0	1	1	1	1	Amidohydrolase	family
Amidohydro_3	PF07969.11	gi|336251757|ref|YP_004585725.1|	-	5.7e-11	42.6	1.2	9.1e-11	41.9	0.1	1.8	2	0	0	2	2	2	1	Amidohydrolase	family
A_deaminase	PF00962.22	gi|336251757|ref|YP_004585725.1|	-	0.00017	21.0	0.0	0.00029	20.3	0.0	1.3	1	0	0	1	1	1	1	Adenosine/AMP	deaminase
Amino_oxidase	PF01593.24	gi|336251758|ref|YP_004585726.1|	-	6.9e-36	124.5	0.0	8.1e-36	124.3	0.0	1.0	1	0	0	1	1	1	1	Flavin	containing	amine	oxidoreductase
NAD_binding_8	PF13450.6	gi|336251758|ref|YP_004585726.1|	-	7.5e-14	51.7	0.0	1.8e-13	50.5	0.0	1.7	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
DAO	PF01266.24	gi|336251758|ref|YP_004585726.1|	-	2.3e-05	24.1	0.3	0.0031	17.1	0.5	2.2	2	0	0	2	2	2	2	FAD	dependent	oxidoreductase
NAD_binding_9	PF13454.6	gi|336251758|ref|YP_004585726.1|	-	0.0003	20.8	0.4	0.32	11.0	0.2	2.3	2	0	0	2	2	2	2	FAD-NAD(P)-binding
Pyr_redox_2	PF07992.14	gi|336251758|ref|YP_004585726.1|	-	0.0017	17.7	0.4	0.27	10.4	0.2	2.1	2	0	0	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|336251758|ref|YP_004585726.1|	-	0.012	16.2	0.1	0.091	13.3	0.4	2.2	2	0	0	2	2	2	0	Pyridine	nucleotide-disulphide	oxidoreductase
Thi4	PF01946.17	gi|336251758|ref|YP_004585726.1|	-	0.012	14.8	0.1	0.021	14.0	0.1	1.3	1	0	0	1	1	1	0	Thi4	family
FMO-like	PF00743.19	gi|336251758|ref|YP_004585726.1|	-	0.017	13.5	0.0	0.023	13.1	0.0	1.1	1	0	0	1	1	1	0	Flavin-binding	monooxygenase-like
FAD_binding_2	PF00890.24	gi|336251758|ref|YP_004585726.1|	-	0.096	11.7	0.5	1.2	8.1	0.2	2.1	2	0	0	2	2	2	0	FAD	binding	domain
DUF3237	PF11578.8	gi|336251758|ref|YP_004585726.1|	-	0.12	12.2	0.0	0.2	11.5	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3237)
3HCDH_N	PF02737.18	gi|336251758|ref|YP_004585726.1|	-	0.28	11.1	0.1	0.45	10.4	0.1	1.3	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
Ferrochelatase	PF00762.19	gi|336251759|ref|YP_004585727.1|	-	9.3e-70	235.2	0.0	1.2e-69	234.9	0.0	1.0	1	0	0	1	1	1	1	Ferrochelatase
CbiX	PF01903.17	gi|336251759|ref|YP_004585727.1|	-	2.2e-06	27.9	0.2	0.00083	19.6	0.0	2.5	2	1	0	2	2	2	2	CbiX
Glyco_trans_4_4	PF13579.6	gi|336251759|ref|YP_004585727.1|	-	8.8e-06	26.2	0.1	0.00074	20.0	0.0	2.3	2	0	0	2	2	2	1	Glycosyl	transferase	4-like	domain
Acetyltransf_8	PF13523.6	gi|336251759|ref|YP_004585727.1|	-	0.0013	18.5	1.5	0.0018	18.0	0.6	1.6	2	0	0	2	2	2	1	Acetyltransferase	(GNAT)	domain
Glyco_transf_4	PF13439.6	gi|336251759|ref|YP_004585727.1|	-	0.017	15.1	0.0	0.039	14.0	0.0	1.5	1	1	0	1	1	1	0	Glycosyltransferase	Family	4
MutL_C	PF08676.11	gi|336251759|ref|YP_004585727.1|	-	0.16	11.7	0.1	2.4	7.9	0.0	2.6	4	0	0	4	4	4	0	MutL	C	terminal	dimerisation	domain
URO-D	PF01208.17	gi|336251760|ref|YP_004585728.1|	-	4.1e-111	371.5	0.0	4.5e-111	371.3	0.0	1.0	1	0	0	1	1	1	1	Uroporphyrinogen	decarboxylase	(URO-D)
DUF934	PF06073.12	gi|336251760|ref|YP_004585728.1|	-	0.013	15.3	0.0	0.29	11.0	0.0	2.5	2	0	0	2	2	2	0	Bacterial	protein	of	unknown	function	(DUF934)
Erythro_esteras	PF05139.14	gi|336251760|ref|YP_004585728.1|	-	0.054	13.3	0.0	0.086	12.6	0.0	1.3	1	0	0	1	1	1	0	Erythromycin	esterase
DUF4342	PF14242.6	gi|336251762|ref|YP_004585730.1|	-	0.051	13.6	8.3	0.1	12.6	0.6	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4342)
DUF2530	PF10745.9	gi|336251763|ref|YP_004585731.1|	-	0.21	11.8	6.5	1.1	9.5	1.6	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2530)
DUF3040	PF11239.8	gi|336251763|ref|YP_004585731.1|	-	0.89	9.9	5.5	7.7	6.9	0.4	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3040)
DUF3040	PF11239.8	gi|336251764|ref|YP_004585732.1|	-	0.0087	16.3	0.6	0.022	15.0	0.6	1.6	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF3040)
DUF1616	PF07760.11	gi|336251765|ref|YP_004585733.1|	-	2.2e-110	368.7	1.5	2.5e-110	368.5	1.5	1.0	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1616)
CwsA	PF10814.8	gi|336251765|ref|YP_004585733.1|	-	0.24	11.6	1.1	7.9	6.7	0.1	2.3	2	0	0	2	2	2	0	Cell	wall	synthesis	protein	CwsA
ABC_tran	PF00005.27	gi|336251766|ref|YP_004585734.1|	-	4.5e-34	117.9	0.0	8.7e-34	117.0	0.0	1.5	1	0	0	1	1	1	1	ABC	transporter
ABC_membrane	PF00664.23	gi|336251766|ref|YP_004585734.1|	-	3.3e-15	56.5	6.2	4.5e-15	56.0	6.2	1.1	1	0	0	1	1	1	1	ABC	transporter	transmembrane	region
SMC_N	PF02463.19	gi|336251766|ref|YP_004585734.1|	-	0.00016	21.2	2.1	0.0021	17.6	1.0	2.3	2	1	0	2	2	2	1	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|336251766|ref|YP_004585734.1|	-	0.0046	16.7	0.1	0.012	15.3	0.1	1.7	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
IstB_IS21	PF01695.17	gi|336251766|ref|YP_004585734.1|	-	0.0075	16.0	0.0	0.18	11.5	0.0	2.3	2	0	0	2	2	2	1	IstB-like	ATP	binding	protein
RsgA_GTPase	PF03193.16	gi|336251766|ref|YP_004585734.1|	-	0.0094	15.9	0.0	0.018	15.0	0.0	1.4	1	0	0	1	1	1	1	RsgA	GTPase
AAA_25	PF13481.6	gi|336251766|ref|YP_004585734.1|	-	0.017	14.7	0.0	0.16	11.6	0.0	2.4	2	0	0	2	2	2	0	AAA	domain
AAA_16	PF13191.6	gi|336251766|ref|YP_004585734.1|	-	0.019	15.4	0.4	0.051	14.0	0.4	1.9	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_22	PF13401.6	gi|336251766|ref|YP_004585734.1|	-	0.023	15.0	3.5	0.15	12.4	0.5	3.2	2	2	0	2	2	2	0	AAA	domain
AAA_21	PF13304.6	gi|336251766|ref|YP_004585734.1|	-	0.04	13.7	0.5	0.21	11.4	0.0	2.2	2	1	0	3	3	3	0	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
Synapsin_N	PF10581.9	gi|336251766|ref|YP_004585734.1|	-	0.048	13.6	1.7	0.31	11.0	0.0	2.8	3	0	0	3	3	3	0	Synapsin	N-terminal
ABC_ATPase	PF09818.9	gi|336251766|ref|YP_004585734.1|	-	0.06	12.1	0.0	0.12	11.2	0.0	1.4	1	0	0	1	1	1	0	Predicted	ATPase	of	the	ABC	class
AAA_18	PF13238.6	gi|336251766|ref|YP_004585734.1|	-	0.093	13.3	0.0	0.26	11.8	0.0	1.8	1	0	0	1	1	1	0	AAA	domain
AAA_24	PF13479.6	gi|336251766|ref|YP_004585734.1|	-	0.13	12.0	0.0	0.24	11.1	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
YdjM	PF04307.14	gi|336251767|ref|YP_004585735.1|	-	5.7e-09	35.5	6.3	8.4e-09	35.0	6.3	1.3	1	0	0	1	1	1	1	LexA-binding,	inner	membrane-associated	putative	hydrolase
DUF4184	PF13803.6	gi|336251767|ref|YP_004585735.1|	-	1.8	8.2	8.0	1.6	8.4	0.1	2.9	2	1	1	3	3	3	0	Domain	of	unknown	function	(DUF4184)
PqqD	PF05402.12	gi|336251768|ref|YP_004585736.1|	-	8.8e-18	64.4	0.2	1.1e-17	64.0	0.2	1.1	1	0	0	1	1	1	1	Coenzyme	PQQ	synthesis	protein	D	(PqqD)
DUF4777	PF16007.5	gi|336251768|ref|YP_004585736.1|	-	2.2e-05	24.6	0.1	3.2e-05	24.1	0.1	1.2	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4777)
Transglut_core3	PF13471.6	gi|336251769|ref|YP_004585737.1|	-	6.3e-17	61.6	0.0	8.2e-17	61.2	0.0	1.1	1	0	0	1	1	1	1	Transglutaminase-like	superfamily
Asn_synthase	PF00733.21	gi|336251770|ref|YP_004585738.1|	-	9.4e-46	157.1	0.1	1.3e-45	156.6	0.1	1.2	1	0	0	1	1	1	1	Asparagine	synthase
GATase_7	PF13537.6	gi|336251770|ref|YP_004585738.1|	-	7.8e-27	93.6	0.0	1.3e-26	92.9	0.0	1.4	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
GATase_6	PF13522.6	gi|336251770|ref|YP_004585738.1|	-	7.9e-24	84.4	0.0	1.5e-23	83.5	0.0	1.5	1	0	0	1	1	1	1	Glutamine	amidotransferase	domain
DUF3700	PF12481.8	gi|336251770|ref|YP_004585738.1|	-	7.7e-05	22.3	0.0	0.00014	21.4	0.0	1.3	1	0	0	1	1	1	1	Aluminium	induced	protein
Hpr_kinase_C	PF07475.12	gi|336251772|ref|YP_004585740.1|	-	0.00032	20.3	0.0	0.00069	19.2	0.0	1.5	1	0	0	1	1	1	1	HPr	Serine	kinase	C-terminal	domain
AAA_28	PF13521.6	gi|336251772|ref|YP_004585740.1|	-	0.0062	16.8	0.0	0.015	15.6	0.0	1.6	1	0	0	1	1	1	1	AAA	domain
AAA_16	PF13191.6	gi|336251772|ref|YP_004585740.1|	-	0.0094	16.3	0.0	0.016	15.6	0.0	1.5	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_14	PF13173.6	gi|336251772|ref|YP_004585740.1|	-	0.015	15.3	0.0	0.025	14.6	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
ABC_tran	PF00005.27	gi|336251772|ref|YP_004585740.1|	-	0.031	14.8	0.0	0.051	14.1	0.0	1.3	1	0	0	1	1	1	0	ABC	transporter
CoaE	PF01121.20	gi|336251772|ref|YP_004585740.1|	-	0.033	13.9	0.0	0.051	13.2	0.0	1.2	1	0	0	1	1	1	0	Dephospho-CoA	kinase
AAA_29	PF13555.6	gi|336251772|ref|YP_004585740.1|	-	0.094	12.5	0.0	0.18	11.6	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_33	PF13671.6	gi|336251772|ref|YP_004585740.1|	-	0.098	12.8	0.0	0.23	11.6	0.0	1.6	2	0	0	2	2	2	0	AAA	domain
IstB_IS21	PF01695.17	gi|336251772|ref|YP_004585740.1|	-	0.13	12.0	0.0	0.36	10.6	0.0	1.7	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
NTP_transf_5	PF14907.6	gi|336251773|ref|YP_004585741.1|	-	4.9e-66	222.9	1.4	8.3e-66	222.1	1.4	1.4	1	0	0	1	1	1	1	Uncharacterised	nucleotidyltransferase
baeRF_family10	PF18854.1	gi|336251773|ref|YP_004585741.1|	-	0.047	13.9	0.1	0.34	11.1	0.0	2.1	2	0	0	2	2	2	0	Bacterial	archaeo-eukaryotic	release	factor	family	10
Sulfatase	PF00884.23	gi|336251774|ref|YP_004585742.1|	-	0.0058	16.1	0.0	0.009	15.4	0.0	1.3	1	0	0	1	1	1	1	Sulfatase
PglZ	PF08665.12	gi|336251774|ref|YP_004585742.1|	-	0.0074	16.4	0.3	0.05	13.7	0.0	2.2	2	0	0	2	2	2	1	PglZ	domain
Polysacc_synt	PF01943.17	gi|336251775|ref|YP_004585743.1|	-	8.6e-27	94.2	23.0	8.6e-27	94.2	23.0	2.5	2	1	0	2	2	2	1	Polysaccharide	biosynthesis	protein
Polysacc_synt_3	PF13440.6	gi|336251775|ref|YP_004585743.1|	-	2.5e-24	86.0	9.2	2.5e-24	86.0	9.2	2.1	1	1	1	2	2	2	1	Polysaccharide	biosynthesis	protein
Polysacc_synt_C	PF14667.6	gi|336251775|ref|YP_004585743.1|	-	1.9e-15	57.2	18.2	1.9e-15	57.2	18.2	3.8	2	1	1	3	3	3	1	Polysaccharide	biosynthesis	C-terminal	domain
MurJ	PF03023.14	gi|336251775|ref|YP_004585743.1|	-	1.9e-13	49.8	17.1	1.9e-13	49.8	17.1	2.1	2	0	0	2	2	2	1	Lipid	II	flippase	MurJ
PNTB_4TM	PF12769.7	gi|336251775|ref|YP_004585743.1|	-	6.4	7.3	11.8	0.22	12.0	3.5	2.9	2	1	0	2	2	2	0	4TM	region	of	pyridine	nucleotide	transhydrogenase,	mitoch
Sulfatase	PF00884.23	gi|336251776|ref|YP_004585744.1|	-	3.7e-27	95.5	0.1	5.1e-27	95.1	0.1	1.2	1	0	0	1	1	1	1	Sulfatase
Phosphodiest	PF01663.22	gi|336251776|ref|YP_004585744.1|	-	2.2e-06	27.5	0.8	0.011	15.4	0.0	2.6	3	0	0	3	3	3	2	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
DUF4994	PF16385.5	gi|336251776|ref|YP_004585744.1|	-	1.3e-05	25.0	0.7	0.0038	17.1	0.7	2.7	1	1	0	1	1	1	1	Domain	of	unknown	function
DUF4976	PF16347.5	gi|336251776|ref|YP_004585744.1|	-	0.00049	20.3	0.1	0.0013	18.9	0.1	1.7	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4976)
Metalloenzyme	PF01676.18	gi|336251776|ref|YP_004585744.1|	-	0.0023	17.4	0.0	0.0047	16.3	0.0	1.5	1	0	0	1	1	1	1	Metalloenzyme	superfamily
Sulfatase_C	PF14707.6	gi|336251776|ref|YP_004585744.1|	-	0.16	12.7	0.4	0.59	10.9	0.3	1.9	1	1	1	2	2	2	0	C-terminal	region	of	aryl-sulfatase
CytochromB561_N	PF09786.9	gi|336251777|ref|YP_004585745.1|	-	0.083	11.9	0.1	0.13	11.2	0.1	1.3	1	0	0	1	1	1	0	Cytochrome	B561,	N	terminal
Sulfatase	PF00884.23	gi|336251778|ref|YP_004585746.1|	-	4.8e-44	151.0	0.1	6.7e-44	150.5	0.1	1.2	1	0	0	1	1	1	1	Sulfatase
Phosphodiest	PF01663.22	gi|336251778|ref|YP_004585746.1|	-	7.1e-08	32.4	0.1	0.00038	20.1	0.0	2.3	2	0	0	2	2	2	2	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
DUF229	PF02995.17	gi|336251778|ref|YP_004585746.1|	-	0.2	10.2	0.0	0.25	9.9	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF229)
Glycos_transf_1	PF00534.20	gi|336251779|ref|YP_004585747.1|	-	2.8e-31	108.4	0.0	4.8e-31	107.6	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|336251779|ref|YP_004585747.1|	-	1.4e-25	90.2	0.0	3.1e-25	89.1	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|336251779|ref|YP_004585747.1|	-	6.5e-19	68.5	0.1	1.7e-18	67.2	0.1	1.7	2	0	0	2	2	2	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|336251779|ref|YP_004585747.1|	-	9.9e-12	45.6	1.0	1.3e-11	45.2	0.2	1.6	2	0	0	2	2	2	1	Glycosyl	transferase	4-like	domain
Glyco_trans_1_2	PF13524.6	gi|336251779|ref|YP_004585747.1|	-	1.9e-07	31.4	0.0	4.5e-07	30.2	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_5	PF08323.11	gi|336251779|ref|YP_004585747.1|	-	0.072	12.8	0.0	0.15	11.7	0.0	1.6	1	0	0	1	1	1	0	Starch	synthase	catalytic	domain
Cutinase	PF01083.22	gi|336251779|ref|YP_004585747.1|	-	0.11	12.5	0.0	0.2	11.6	0.0	1.4	1	0	0	1	1	1	0	Cutinase
Phosphodiest	PF01663.22	gi|336251780|ref|YP_004585748.1|	-	6.3e-45	154.3	2.2	6.4e-36	124.7	0.4	2.0	2	0	0	2	2	2	2	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
Metalloenzyme	PF01676.18	gi|336251780|ref|YP_004585748.1|	-	0.0008	18.8	0.1	0.0015	17.9	0.1	1.4	1	0	0	1	1	1	1	Metalloenzyme	superfamily
Glycos_transf_1	PF00534.20	gi|336251781|ref|YP_004585749.1|	-	4.5e-46	156.5	0.0	6.5e-46	156.0	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|336251781|ref|YP_004585749.1|	-	3.5e-36	124.6	0.0	6.3e-36	123.8	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|336251781|ref|YP_004585749.1|	-	7.9e-18	65.0	1.3	1.7e-17	64.0	1.3	1.6	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_1_2	PF13524.6	gi|336251781|ref|YP_004585749.1|	-	2.9e-14	53.2	0.0	6e-14	52.2	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_4_4	PF13579.6	gi|336251781|ref|YP_004585749.1|	-	7.2e-13	49.3	1.5	7.2e-13	49.3	1.5	1.9	2	0	0	2	2	2	1	Glycosyl	transferase	4-like	domain
Glyco_trans_4_2	PF13477.6	gi|336251781|ref|YP_004585749.1|	-	0.013	15.5	0.0	0.025	14.6	0.0	1.4	1	0	0	1	1	1	0	Glycosyl	transferase	4-like
DUF498	PF04430.14	gi|336251781|ref|YP_004585749.1|	-	0.027	14.5	0.0	0.055	13.5	0.0	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF498/DUF598)
Sulfatase	PF00884.23	gi|336251782|ref|YP_004585750.1|	-	3.8e-48	164.5	0.4	4.6e-48	164.2	0.4	1.1	1	0	0	1	1	1	1	Sulfatase
Phosphodiest	PF01663.22	gi|336251782|ref|YP_004585750.1|	-	7.1e-09	35.7	1.0	0.00032	20.4	0.4	2.5	2	1	0	2	2	2	2	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
DUF229	PF02995.17	gi|336251782|ref|YP_004585750.1|	-	0.00036	19.3	0.0	0.00057	18.6	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF229)
Metalloenzyme	PF01676.18	gi|336251782|ref|YP_004585750.1|	-	0.0011	18.4	0.0	0.15	11.4	0.0	2.3	2	0	0	2	2	2	2	Metalloenzyme	superfamily
PG_binding_2	PF08823.11	gi|336251782|ref|YP_004585750.1|	-	0.016	15.5	0.4	0.5	10.7	0.1	3.1	3	0	0	3	3	3	0	Putative	peptidoglycan	binding	domain
TPR_7	PF13176.6	gi|336251782|ref|YP_004585750.1|	-	0.25	11.5	1.4	17	5.7	0.0	4.0	3	1	0	3	3	3	0	Tetratricopeptide	repeat
Glycos_transf_1	PF00534.20	gi|336251783|ref|YP_004585751.1|	-	1.5e-31	109.2	0.0	2.1e-31	108.8	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	transferases	group	1
Glyco_trans_1_4	PF13692.6	gi|336251783|ref|YP_004585751.1|	-	4.6e-28	98.3	0.0	2.6e-26	92.6	0.0	2.3	2	0	0	2	2	2	1	Glycosyl	transferases	group	1
Glyco_transf_4	PF13439.6	gi|336251783|ref|YP_004585751.1|	-	6.1e-25	88.2	0.7	1.3e-24	87.1	0.7	1.6	1	0	0	1	1	1	1	Glycosyltransferase	Family	4
Glyco_trans_4_4	PF13579.6	gi|336251783|ref|YP_004585751.1|	-	8.2e-19	68.6	4.0	8.2e-19	68.6	4.0	2.4	2	1	0	2	2	2	1	Glycosyl	transferase	4-like	domain
Glyco_trans_1_2	PF13524.6	gi|336251783|ref|YP_004585751.1|	-	0.027	14.8	0.2	0.069	13.5	0.2	1.7	1	0	0	1	1	1	0	Glycosyl	transferases	group	1
L27	PF02828.16	gi|336251783|ref|YP_004585751.1|	-	0.1	12.4	0.0	0.23	11.2	0.0	1.6	1	0	0	1	1	1	0	L27	domain
PAPS_reduct	PF01507.19	gi|336251784|ref|YP_004585752.1|	-	2.7e-18	66.6	0.0	3.2e-14	53.3	0.0	3.1	2	1	0	2	2	2	2	Phosphoadenosine	phosphosulfate	reductase	family
ATP_bind_3	PF01171.20	gi|336251784|ref|YP_004585752.1|	-	0.0043	16.8	0.0	0.0073	16.1	0.0	1.3	1	0	0	1	1	1	1	PP-loop	family
Diphthami_syn_2	PF01902.17	gi|336251784|ref|YP_004585752.1|	-	0.063	12.8	0.0	0.097	12.2	0.0	1.3	1	0	0	1	1	1	0	Diphthamide	synthase
PHO4	PF01384.20	gi|336251785|ref|YP_004585753.1|	-	4.7e-34	117.9	37.7	2.3e-33	115.6	36.9	2.1	1	1	0	1	1	1	1	Phosphate	transporter	family
Phosphodiest	PF01663.22	gi|336251786|ref|YP_004585754.1|	-	4.9e-54	184.3	0.2	5.7e-54	184.0	0.2	1.0	1	0	0	1	1	1	1	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
Sulfatase	PF00884.23	gi|336251786|ref|YP_004585754.1|	-	0.0085	15.5	3.2	0.091	12.1	0.9	2.8	3	0	0	3	3	3	1	Sulfatase
DUF2063	PF09836.9	gi|336251786|ref|YP_004585754.1|	-	0.075	13.3	0.2	0.16	12.2	0.2	1.6	1	0	0	1	1	1	0	Putative	DNA-binding	domain
MarR	PF01047.22	gi|336251787|ref|YP_004585755.1|	-	1.9e-06	27.7	0.3	6.9e-05	22.7	0.0	2.4	2	0	0	2	2	2	1	MarR	family
MarR_2	PF12802.7	gi|336251787|ref|YP_004585755.1|	-	6.2e-06	26.0	0.9	4.8e-05	23.2	0.1	2.5	2	0	0	2	2	2	1	MarR	family
HTH_24	PF13412.6	gi|336251787|ref|YP_004585755.1|	-	1.6e-05	24.3	0.0	0.00049	19.6	0.0	2.6	2	1	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_AsnC-type	PF13404.6	gi|336251787|ref|YP_004585755.1|	-	0.0081	16.0	1.0	0.14	12.0	0.1	2.7	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
HSBP1	PF06825.12	gi|336251787|ref|YP_004585755.1|	-	0.023	14.6	0.0	0.049	13.5	0.0	1.6	1	0	0	1	1	1	0	Heat	shock	factor	binding	protein	1
Sigma70_r4	PF04545.16	gi|336251787|ref|YP_004585755.1|	-	0.028	13.9	0.0	0.066	12.7	0.0	1.6	1	0	0	1	1	1	0	Sigma-70,	region	4
HTH_Crp_2	PF13545.6	gi|336251787|ref|YP_004585755.1|	-	0.059	13.4	0.7	0.13	12.2	0.1	1.9	2	0	0	2	2	2	0	Crp-like	helix-turn-helix	domain
NUDIX	PF00293.28	gi|336251788|ref|YP_004585756.1|	-	1.3e-17	64.0	0.2	1.6e-17	63.7	0.2	1.1	1	0	0	1	1	1	1	NUDIX	domain
NUDIX_2	PF13869.6	gi|336251788|ref|YP_004585756.1|	-	0.018	14.6	0.0	0.023	14.3	0.0	1.2	1	0	0	1	1	1	0	Nucleotide	hydrolase
NTP_transferase	PF00483.23	gi|336251789|ref|YP_004585757.1|	-	1.4e-34	119.8	0.0	1.8e-34	119.5	0.0	1.1	1	0	0	1	1	1	1	Nucleotidyl	transferase
NTP_transf_3	PF12804.7	gi|336251789|ref|YP_004585757.1|	-	3.7e-08	33.9	0.0	4.9e-08	33.5	0.0	1.2	1	0	0	1	1	1	1	MobA-like	NTP	transferase	domain
IspD	PF01128.19	gi|336251789|ref|YP_004585757.1|	-	0.0031	17.3	0.0	0.0051	16.6	0.0	1.4	1	0	0	1	1	1	1	2-C-methyl-D-erythritol	4-phosphate	cytidylyltransferase
Glycos_transf_2	PF00535.26	gi|336251790|ref|YP_004585758.1|	-	1.1e-26	93.6	0.0	1.8e-26	92.9	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	transferase	family	2
Glyco_tranf_2_3	PF13641.6	gi|336251790|ref|YP_004585758.1|	-	4.6e-05	23.4	0.0	6.3e-05	23.0	0.0	1.2	1	0	0	1	1	1	1	Glycosyltransferase	like	family	2
Prok-RING_1	PF14446.6	gi|336251791|ref|YP_004585759.1|	-	0.0075	16.2	0.4	0.012	15.6	0.4	1.3	1	0	0	1	1	1	1	Prokaryotic	RING	finger	family	1
PHD	PF00628.29	gi|336251791|ref|YP_004585759.1|	-	0.051	13.5	1.4	0.069	13.0	1.4	1.2	1	0	0	1	1	1	0	PHD-finger
Epimerase	PF01370.21	gi|336251792|ref|YP_004585760.1|	-	6.3e-44	150.2	0.6	7.5e-44	150.0	0.6	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|336251792|ref|YP_004585760.1|	-	7.2e-41	140.7	0.6	7.2e-40	137.4	0.6	2.3	1	1	0	1	1	1	1	GDP-mannose	4,6	dehydratase
RmlD_sub_bind	PF04321.17	gi|336251792|ref|YP_004585760.1|	-	5.7e-11	42.0	0.3	8e-11	41.6	0.3	1.2	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
3Beta_HSD	PF01073.19	gi|336251792|ref|YP_004585760.1|	-	5.3e-10	38.8	1.9	1.8e-09	37.0	1.9	1.9	1	1	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
Polysacc_synt_2	PF02719.15	gi|336251792|ref|YP_004585760.1|	-	6.3e-10	38.7	0.3	2.7e-08	33.3	0.3	2.6	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
NAD_binding_4	PF07993.12	gi|336251792|ref|YP_004585760.1|	-	5.5e-07	29.0	0.4	9.3e-05	21.7	0.1	2.5	2	1	0	2	2	2	2	Male	sterility	protein
adh_short	PF00106.25	gi|336251792|ref|YP_004585760.1|	-	0.06	12.8	0.4	0.5	9.8	0.0	2.3	1	1	1	2	2	2	0	short	chain	dehydrogenase
KR	PF08659.10	gi|336251792|ref|YP_004585760.1|	-	0.11	12.5	0.1	1.2	9.0	0.0	2.1	2	0	0	2	2	2	0	KR	domain
DUF1188	PF06690.11	gi|336251792|ref|YP_004585760.1|	-	0.18	11.4	0.0	0.23	11.0	0.0	1.2	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1188)
Epimerase	PF01370.21	gi|336251793|ref|YP_004585761.1|	-	1e-53	182.3	0.0	1.3e-53	182.0	0.0	1.1	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|336251793|ref|YP_004585761.1|	-	9e-46	156.8	0.0	5.9e-45	154.1	0.0	1.9	1	1	0	1	1	1	1	GDP-mannose	4,6	dehydratase
Polysacc_synt_2	PF02719.15	gi|336251793|ref|YP_004585761.1|	-	6.9e-18	64.8	0.0	1.4e-16	60.5	0.0	2.6	1	1	0	1	1	1	1	Polysaccharide	biosynthesis	protein
RmlD_sub_bind	PF04321.17	gi|336251793|ref|YP_004585761.1|	-	2.7e-17	62.8	0.0	3.7e-17	62.3	0.0	1.1	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
3Beta_HSD	PF01073.19	gi|336251793|ref|YP_004585761.1|	-	7.6e-15	54.7	0.0	1.1e-14	54.2	0.0	1.2	1	0	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
NAD_binding_10	PF13460.6	gi|336251793|ref|YP_004585761.1|	-	1.2e-13	51.4	0.0	1.7e-13	50.9	0.0	1.2	1	0	0	1	1	1	1	NAD(P)H-binding
NAD_binding_4	PF07993.12	gi|336251793|ref|YP_004585761.1|	-	1.5e-11	43.9	0.0	1.2e-06	27.9	0.0	2.8	2	1	0	2	2	2	2	Male	sterility	protein
NmrA	PF05368.13	gi|336251793|ref|YP_004585761.1|	-	1.1e-07	31.6	0.0	1.2e-06	28.3	0.0	2.0	1	1	0	1	1	1	1	NmrA-like	family
adh_short	PF00106.25	gi|336251793|ref|YP_004585761.1|	-	5.9e-07	29.1	0.0	7.8e-05	22.2	0.0	2.4	1	1	1	2	2	2	1	short	chain	dehydrogenase
TrkA_N	PF02254.18	gi|336251793|ref|YP_004585761.1|	-	9.2e-05	22.7	0.0	0.00018	21.7	0.0	1.4	1	0	0	1	1	1	1	TrkA-N	domain
NAD_binding_7	PF13241.6	gi|336251793|ref|YP_004585761.1|	-	0.042	14.3	0.0	0.068	13.6	0.0	1.3	1	0	0	1	1	1	0	Putative	NAD(P)-binding
KR	PF08659.10	gi|336251793|ref|YP_004585761.1|	-	0.054	13.4	0.2	0.17	11.7	0.1	1.9	1	1	0	1	1	1	0	KR	domain
THF_DHG_CYH_C	PF02882.19	gi|336251793|ref|YP_004585761.1|	-	0.18	11.1	0.0	5.7	6.2	0.0	2.2	2	0	0	2	2	2	0	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
BPD_transp_1	PF00528.22	gi|336251795|ref|YP_004585763.1|	-	2e-15	57.0	16.8	2e-15	57.0	16.8	2.1	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
DUF4500	PF14937.6	gi|336251795|ref|YP_004585763.1|	-	0.12	12.4	0.8	7.3	6.7	0.0	2.5	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4500)
BPD_transp_1	PF00528.22	gi|336251796|ref|YP_004585764.1|	-	3.3e-19	69.3	16.4	3.3e-19	69.3	16.4	2.1	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
SBP_bac_8	PF13416.6	gi|336251797|ref|YP_004585765.1|	-	1.7e-17	64.2	0.0	3.9e-17	63.0	0.0	1.5	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_1	PF01547.25	gi|336251797|ref|YP_004585765.1|	-	4.4e-09	36.7	0.2	7.2e-09	36.0	0.2	1.4	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
TAT_signal	PF10518.9	gi|336251797|ref|YP_004585765.1|	-	0.94	9.4	10.8	0.038	13.8	4.3	2.1	2	0	0	2	2	2	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
ABC_tran	PF00005.27	gi|336251798|ref|YP_004585766.1|	-	1.2e-32	113.3	0.0	1.9e-32	112.6	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
OB_MalK	PF17912.1	gi|336251798|ref|YP_004585766.1|	-	3e-09	37.6	0.1	1.2e-08	35.6	0.0	2.1	2	0	0	2	2	1	1	MalK	OB	fold	domain
AAA_21	PF13304.6	gi|336251798|ref|YP_004585766.1|	-	1.3e-05	25.2	0.0	0.029	14.2	0.0	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
Rad17	PF03215.15	gi|336251798|ref|YP_004585766.1|	-	3.2e-05	24.0	0.0	4.9e-05	23.3	0.0	1.2	1	0	0	1	1	1	1	Rad17	P-loop	domain
SMC_N	PF02463.19	gi|336251798|ref|YP_004585766.1|	-	0.0015	18.0	0.3	0.077	12.4	0.3	2.2	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
TOBE_2	PF08402.10	gi|336251798|ref|YP_004585766.1|	-	0.0019	18.3	0.3	0.029	14.5	0.3	2.6	1	1	0	1	1	1	1	TOBE	domain
AAA_15	PF13175.6	gi|336251798|ref|YP_004585766.1|	-	0.0023	17.7	0.0	0.0094	15.7	0.0	1.8	2	0	0	2	2	2	1	AAA	ATPase	domain
CysA_C_terminal	PF17850.1	gi|336251798|ref|YP_004585766.1|	-	0.0025	18.4	0.7	0.01	16.4	0.2	2.3	2	0	0	2	2	2	1	CysA	C-terminal	regulatory	domain
AAA_22	PF13401.6	gi|336251798|ref|YP_004585766.1|	-	0.0078	16.5	0.0	0.014	15.7	0.0	1.5	1	1	0	1	1	1	1	AAA	domain
RsgA_GTPase	PF03193.16	gi|336251798|ref|YP_004585766.1|	-	0.0081	16.1	0.0	0.016	15.1	0.0	1.4	1	0	0	1	1	1	1	RsgA	GTPase
AAA_29	PF13555.6	gi|336251798|ref|YP_004585766.1|	-	0.013	15.2	0.3	0.032	14.0	0.3	1.6	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.6	gi|336251798|ref|YP_004585766.1|	-	0.017	15.5	0.1	0.03	14.7	0.1	1.6	1	1	0	1	1	1	0	AAA	ATPase	domain
AAA_23	PF13476.6	gi|336251798|ref|YP_004585766.1|	-	0.037	14.5	0.0	0.051	14.1	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
Zeta_toxin	PF06414.12	gi|336251798|ref|YP_004585766.1|	-	0.067	12.5	0.1	0.15	11.4	0.0	1.5	2	0	0	2	2	2	0	Zeta	toxin
AAA_5	PF07728.14	gi|336251798|ref|YP_004585766.1|	-	0.082	12.9	0.0	0.17	11.9	0.0	1.4	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
AAA_30	PF13604.6	gi|336251798|ref|YP_004585766.1|	-	0.1	12.3	0.0	0.22	11.2	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
Glyco_hydro_3_C	PF01915.22	gi|336251799|ref|YP_004585767.1|	-	3.6e-52	177.3	0.0	7.4e-52	176.3	0.0	1.6	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	3	C-terminal	domain
Glyco_hydro_3	PF00933.21	gi|336251799|ref|YP_004585767.1|	-	1.7e-34	119.6	0.0	2.6e-34	119.0	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	3	N	terminal	domain
Fn3-like	PF14310.6	gi|336251799|ref|YP_004585767.1|	-	1.2e-23	82.9	3.7	3.2e-23	81.6	0.8	2.7	3	0	0	3	3	3	1	Fibronectin	type	III-like	domain
CBM_6	PF03422.15	gi|336251799|ref|YP_004585767.1|	-	7.4e-15	55.4	0.1	1.9e-14	54.1	0.1	1.7	1	0	0	1	1	1	1	Carbohydrate	binding	module	(family	6)
CARDB	PF07705.11	gi|336251799|ref|YP_004585767.1|	-	0.0031	17.7	0.0	0.011	15.9	0.0	1.9	1	0	0	1	1	1	1	CARDB
Fascin	PF06268.13	gi|336251799|ref|YP_004585767.1|	-	0.018	15.3	0.0	9.1	6.5	0.0	2.5	1	1	0	2	2	2	0	Fascin	domain
RicinB_lectin_2	PF14200.6	gi|336251799|ref|YP_004585767.1|	-	0.047	14.4	0.3	1.3	9.8	0.2	2.7	2	0	0	2	2	2	0	Ricin-type	beta-trefoil	lectin	domain-like
NPCBM_assoc	PF10633.9	gi|336251799|ref|YP_004585767.1|	-	0.055	13.7	3.3	4.5	7.6	0.2	4.0	4	0	0	4	4	4	0	NPCBM-associated,	NEW3	domain	of	alpha-galactosidase
DUF11	PF01345.18	gi|336251799|ref|YP_004585767.1|	-	0.28	11.5	7.4	0.29	11.5	0.3	3.7	3	1	0	3	3	3	0	Domain	of	unknown	function	DUF11
KGG	PF10685.9	gi|336251799|ref|YP_004585767.1|	-	8.5	6.8	7.0	2.2	8.7	0.9	2.9	3	0	0	3	3	3	0	Stress-induced	bacterial	acidophilic	repeat	motif
Glyco_hydro_31	PF01055.26	gi|336251800|ref|YP_004585768.1|	-	5e-128	428.0	4.7	6.1e-128	427.7	4.7	1.1	1	0	0	1	1	1	1	Glycosyl	hydrolases	family	31
DUF5110	PF17137.4	gi|336251800|ref|YP_004585768.1|	-	1.5e-16	60.4	0.0	4.8e-16	58.8	0.0	2.0	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF5110)
DUF4968	PF16338.5	gi|336251800|ref|YP_004585768.1|	-	1.4e-12	47.7	0.0	4e-12	46.3	0.0	1.7	2	0	0	2	2	2	1	Domain	of	unknown	function	(DUF4968)
Gal_mutarotas_2	PF13802.6	gi|336251800|ref|YP_004585768.1|	-	0.0005	20.3	0.5	0.0021	18.3	0.5	2.1	1	1	0	1	1	1	1	Galactose	mutarotase-like
IclR	PF01614.18	gi|336251801|ref|YP_004585769.1|	-	3.1e-40	137.0	0.1	4.5e-40	136.5	0.1	1.2	1	0	0	1	1	1	1	Bacterial	transcriptional	regulator
HTH_IclR	PF09339.10	gi|336251801|ref|YP_004585769.1|	-	6.5e-15	54.7	0.0	7.7e-13	48.0	0.0	2.4	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
HTH_24	PF13412.6	gi|336251801|ref|YP_004585769.1|	-	2e-07	30.5	0.0	5.4e-07	29.1	0.0	1.8	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.20	gi|336251801|ref|YP_004585769.1|	-	3.1e-06	27.0	0.0	6e-06	26.0	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR	PF01047.22	gi|336251801|ref|YP_004585769.1|	-	2.9e-05	23.9	0.0	7.8e-05	22.5	0.0	1.7	1	0	0	1	1	1	1	MarR	family
MarR_2	PF12802.7	gi|336251801|ref|YP_004585769.1|	-	3.1e-05	23.8	0.0	0.00014	21.7	0.0	2.0	2	0	0	2	2	2	1	MarR	family
TrmB	PF01978.19	gi|336251801|ref|YP_004585769.1|	-	0.00017	21.4	0.1	0.0008	19.3	0.0	2.3	2	1	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_20	PF12840.7	gi|336251801|ref|YP_004585769.1|	-	0.00024	21.1	0.0	0.00073	19.5	0.0	1.8	1	0	0	1	1	1	1	Helix-turn-helix	domain
Fe_dep_repress	PF01325.19	gi|336251801|ref|YP_004585769.1|	-	0.0028	17.8	0.0	0.0056	16.9	0.0	1.4	1	0	0	1	1	1	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_45	PF14947.6	gi|336251801|ref|YP_004585769.1|	-	0.0063	16.5	0.0	0.015	15.3	0.0	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix
z-alpha	PF02295.17	gi|336251801|ref|YP_004585769.1|	-	0.012	15.6	0.0	0.035	14.2	0.0	1.7	1	0	0	1	1	1	0	Adenosine	deaminase	z-alpha	domain
HTH_11	PF08279.12	gi|336251801|ref|YP_004585769.1|	-	0.039	13.9	0.0	0.13	12.2	0.0	1.9	2	0	0	2	2	2	0	HTH	domain
DUF742	PF05331.11	gi|336251801|ref|YP_004585769.1|	-	0.049	13.4	0.0	0.11	12.3	0.0	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF742)
HTH_27	PF13463.6	gi|336251801|ref|YP_004585769.1|	-	0.072	13.6	0.1	0.24	11.9	0.1	1.9	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain
GAF_2	PF13185.6	gi|336251801|ref|YP_004585769.1|	-	0.11	12.8	0.1	0.2	12.0	0.1	1.4	1	1	0	1	1	1	0	GAF	domain
adh_short_C2	PF13561.6	gi|336251802|ref|YP_004585770.1|	-	7.9e-56	189.2	3.2	1.2e-55	188.6	3.2	1.2	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|336251802|ref|YP_004585770.1|	-	1.5e-47	161.6	1.0	2e-47	161.2	1.0	1.3	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|336251802|ref|YP_004585770.1|	-	1e-10	41.8	1.6	3.5e-08	33.6	0.2	2.1	1	1	1	2	2	2	2	KR	domain
Epimerase	PF01370.21	gi|336251802|ref|YP_004585770.1|	-	6.3e-05	22.6	0.3	0.00023	20.7	0.3	1.8	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
THF_DHG_CYH_C	PF02882.19	gi|336251802|ref|YP_004585770.1|	-	0.011	15.1	0.0	0.02	14.2	0.0	1.4	1	0	0	1	1	1	0	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
3HCDH_N	PF02737.18	gi|336251802|ref|YP_004585770.1|	-	0.019	14.8	0.3	0.11	12.4	0.1	2.1	2	0	0	2	2	2	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
NmrA	PF05368.13	gi|336251802|ref|YP_004585770.1|	-	0.04	13.5	0.2	0.089	12.3	0.3	1.6	2	0	0	2	2	2	0	NmrA-like	family
F420_oxidored	PF03807.17	gi|336251802|ref|YP_004585770.1|	-	0.041	14.5	0.5	0.17	12.5	0.0	2.2	2	0	0	2	2	2	0	NADP	oxidoreductase	coenzyme	F420-dependent
ACT_7	PF13840.6	gi|336251802|ref|YP_004585770.1|	-	0.094	12.5	0.1	1.8	8.4	0.0	2.4	2	0	0	2	2	2	0	ACT	domain
SIMPL	PF04402.14	gi|336251802|ref|YP_004585770.1|	-	1.2	9.6	6.0	22	5.4	6.0	2.3	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF541)
GFO_IDH_MocA	PF01408.22	gi|336251803|ref|YP_004585771.1|	-	7.6e-17	62.2	1.1	2.6e-16	60.5	1.1	1.9	1	1	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
MR_MLE_C	PF13378.6	gi|336251804|ref|YP_004585772.1|	-	5.8e-45	153.5	0.2	7.8e-45	153.1	0.2	1.2	1	0	0	1	1	1	1	Enolase	C-terminal	domain-like
MR_MLE_N	PF02746.16	gi|336251804|ref|YP_004585772.1|	-	1.8e-09	37.8	0.0	3.5e-09	36.9	0.0	1.4	1	0	0	1	1	1	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	N-terminal	domain
Glyco_hydro81C	PF17652.1	gi|336251805|ref|YP_004585773.1|	-	5.8e-47	160.6	7.6	9e-47	160.0	7.6	1.2	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	81	C-terminal	domain
Glyco_hydro_81	PF03639.13	gi|336251805|ref|YP_004585773.1|	-	2.9e-08	33.2	0.0	8e-08	31.8	0.0	1.6	1	1	0	1	1	1	1	Glycosyl	hydrolase	family	81	N-terminal	domain
Regulator_TrmB	PF11495.8	gi|336251806|ref|YP_004585774.1|	-	1.7e-47	161.5	0.0	2.2e-47	161.2	0.0	1.1	1	0	0	1	1	1	1	Archaeal	transcriptional	regulator	TrmB
TrmB	PF01978.19	gi|336251806|ref|YP_004585774.1|	-	5.6e-14	51.8	0.0	1.2e-13	50.7	0.0	1.6	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_7	PF02796.15	gi|336251806|ref|YP_004585774.1|	-	0.0044	17.1	0.0	0.0084	16.2	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain	of	resolvase
HTH_IclR	PF09339.10	gi|336251806|ref|YP_004585774.1|	-	0.0047	16.7	0.0	0.0099	15.7	0.0	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
PadR	PF03551.14	gi|336251806|ref|YP_004585774.1|	-	0.037	14.0	0.0	0.16	12.0	0.0	2.0	2	0	0	2	2	2	0	Transcriptional	regulator	PadR-like	family
CENP-B_N	PF04218.13	gi|336251806|ref|YP_004585774.1|	-	0.057	13.1	0.0	0.11	12.1	0.0	1.5	1	0	0	1	1	1	0	CENP-B	N-terminal	DNA-binding	domain
FaeA	PF04703.12	gi|336251806|ref|YP_004585774.1|	-	0.13	12.7	0.2	0.63	10.4	0.1	2.1	1	1	1	2	2	2	0	FaeA-like	protein
HTH_23	PF13384.6	gi|336251806|ref|YP_004585774.1|	-	0.13	12.0	0.0	0.61	10.0	0.0	2.0	2	0	0	2	2	2	0	Homeodomain-like	domain
MscS_TM	PF12794.7	gi|336251807|ref|YP_004585775.1|	-	0.0042	16.0	1.2	0.0051	15.7	1.2	1.0	1	0	0	1	1	1	1	Mechanosensitive	ion	channel	inner	membrane	domain	1
DUF202	PF02656.15	gi|336251807|ref|YP_004585775.1|	-	0.041	14.3	2.3	0.061	13.8	2.3	1.3	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF202)
CoA_binding_3	PF13727.6	gi|336251807|ref|YP_004585775.1|	-	0.042	13.9	2.5	0.051	13.6	2.5	1.0	1	0	0	1	1	1	0	CoA-binding	domain
DUF2417	PF10329.9	gi|336251807|ref|YP_004585775.1|	-	0.089	12.2	0.1	0.098	12.1	0.1	1.1	1	0	0	1	1	1	0	Region	of	unknown	function	(DUF2417)
ABC_tran	PF00005.27	gi|336251808|ref|YP_004585776.1|	-	1.5e-28	100.0	0.0	2.1e-28	99.6	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|336251808|ref|YP_004585776.1|	-	5.1e-14	52.5	0.3	1.3e-13	51.3	0.3	1.7	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|336251808|ref|YP_004585776.1|	-	2.1e-06	27.8	0.9	0.035	13.9	0.1	2.1	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|336251808|ref|YP_004585776.1|	-	0.00066	19.2	0.0	0.43	10.0	0.0	2.2	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|336251808|ref|YP_004585776.1|	-	0.0048	16.6	0.1	0.0083	15.8	0.1	1.3	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.6	gi|336251808|ref|YP_004585776.1|	-	0.012	16.0	0.0	0.018	15.5	0.0	1.4	1	0	0	1	1	1	0	AAA	ATPase	domain
AAA_22	PF13401.6	gi|336251808|ref|YP_004585776.1|	-	0.012	15.9	3.7	0.22	11.8	3.7	2.3	1	1	0	1	1	1	0	AAA	domain
ATPase	PF06745.13	gi|336251808|ref|YP_004585776.1|	-	0.018	14.4	0.0	0.034	13.5	0.0	1.3	1	0	0	1	1	1	0	KaiC
NB-ARC	PF00931.22	gi|336251808|ref|YP_004585776.1|	-	0.029	13.5	0.1	0.053	12.7	0.1	1.3	1	0	0	1	1	1	0	NB-ARC	domain
AAA_23	PF13476.6	gi|336251808|ref|YP_004585776.1|	-	0.031	14.8	0.0	0.052	14.1	0.0	1.3	1	0	0	1	1	1	0	AAA	domain
AAA_30	PF13604.6	gi|336251808|ref|YP_004585776.1|	-	0.08	12.6	0.0	0.15	11.8	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
PhoH	PF02562.16	gi|336251808|ref|YP_004585776.1|	-	0.12	11.8	0.0	0.2	11.1	0.0	1.3	1	0	0	1	1	1	0	PhoH-like	protein
NACHT	PF05729.12	gi|336251808|ref|YP_004585776.1|	-	0.14	12.1	0.5	0.25	11.2	0.1	1.6	2	0	0	2	2	2	0	NACHT	domain
MobB	PF03205.14	gi|336251808|ref|YP_004585776.1|	-	0.18	11.7	0.1	0.32	10.9	0.1	1.4	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
AAA_24	PF13479.6	gi|336251808|ref|YP_004585776.1|	-	0.2	11.3	0.1	0.34	10.6	0.1	1.3	1	0	0	1	1	1	0	AAA	domain
ABC_tran	PF00005.27	gi|336251809|ref|YP_004585777.1|	-	2.8e-22	79.7	0.0	3.9e-22	79.3	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|336251809|ref|YP_004585777.1|	-	2.2e-19	69.7	0.3	4.5e-19	68.7	0.3	1.6	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|336251809|ref|YP_004585777.1|	-	1.5e-08	34.8	0.2	1.5e-06	28.3	0.2	2.2	2	0	0	2	2	2	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|336251809|ref|YP_004585777.1|	-	0.00018	21.0	0.3	0.057	12.9	0.0	2.2	2	0	0	2	2	2	2	RecF/RecN/SMC	N	terminal	domain
AAA_22	PF13401.6	gi|336251809|ref|YP_004585777.1|	-	0.0012	19.1	0.6	0.029	14.7	0.6	2.2	1	1	0	1	1	1	1	AAA	domain
AAA_25	PF13481.6	gi|336251809|ref|YP_004585777.1|	-	0.0032	17.0	0.0	0.1	12.2	0.0	2.4	2	1	0	2	2	2	1	AAA	domain
IstB_IS21	PF01695.17	gi|336251809|ref|YP_004585777.1|	-	0.0038	17.0	0.1	0.08	12.7	0.0	2.2	2	0	0	2	2	2	1	IstB-like	ATP	binding	protein
ABC_ATPase	PF09818.9	gi|336251809|ref|YP_004585777.1|	-	0.0045	15.9	0.1	0.057	12.2	0.0	2.3	2	1	0	2	2	2	1	Predicted	ATPase	of	the	ABC	class
DUF87	PF01935.17	gi|336251809|ref|YP_004585777.1|	-	0.018	15.1	0.1	0.033	14.3	0.1	1.3	1	0	0	1	1	1	0	Helicase	HerA,	central	domain
PRK	PF00485.18	gi|336251809|ref|YP_004585777.1|	-	0.024	14.3	0.0	0.035	13.9	0.0	1.2	1	0	0	1	1	1	0	Phosphoribulokinase	/	Uridine	kinase	family
AAA_29	PF13555.6	gi|336251809|ref|YP_004585777.1|	-	0.029	14.1	0.0	0.059	13.1	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.6	gi|336251809|ref|YP_004585777.1|	-	0.046	14.1	0.1	0.078	13.3	0.1	1.6	1	1	0	1	1	1	0	AAA	ATPase	domain
MeaB	PF03308.16	gi|336251809|ref|YP_004585777.1|	-	0.05	12.6	0.0	0.07	12.1	0.0	1.1	1	0	0	1	1	1	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
T2SSE	PF00437.20	gi|336251809|ref|YP_004585777.1|	-	0.059	12.4	0.0	0.096	11.7	0.0	1.4	1	0	0	1	1	1	0	Type	II/IV	secretion	system	protein
NACHT	PF05729.12	gi|336251809|ref|YP_004585777.1|	-	0.092	12.7	0.0	0.18	11.7	0.0	1.5	1	0	0	1	1	1	0	NACHT	domain
Dynamin_N	PF00350.23	gi|336251809|ref|YP_004585777.1|	-	0.13	12.3	0.0	0.23	11.5	0.0	1.4	1	0	0	1	1	1	0	Dynamin	family
MobB	PF03205.14	gi|336251809|ref|YP_004585777.1|	-	0.16	11.9	0.0	0.29	11.0	0.0	1.4	1	0	0	1	1	1	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
PhoH	PF02562.16	gi|336251809|ref|YP_004585777.1|	-	0.22	10.9	0.0	0.37	10.2	0.0	1.3	1	0	0	1	1	1	0	PhoH-like	protein
BPD_transp_1	PF00528.22	gi|336251810|ref|YP_004585778.1|	-	9.3e-23	80.9	12.5	9.3e-23	80.9	12.5	1.6	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
OppC_N	PF12911.7	gi|336251810|ref|YP_004585778.1|	-	0.25	11.3	0.0	0.25	11.3	0.0	2.4	3	0	0	3	3	3	0	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
BPD_transp_1	PF00528.22	gi|336251811|ref|YP_004585779.1|	-	6.6e-36	123.8	9.7	6.6e-36	123.8	9.7	1.9	3	0	0	3	3	3	1	Binding-protein-dependent	transport	system	inner	membrane	component
SBP_bac_5	PF00496.22	gi|336251812|ref|YP_004585780.1|	-	2.3e-47	161.8	6.8	2.8e-47	161.5	6.8	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
TAT_signal	PF10518.9	gi|336251812|ref|YP_004585780.1|	-	0.099	12.5	2.9	0.16	11.8	2.9	1.4	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
LRR_adjacent	PF08191.11	gi|336251812|ref|YP_004585780.1|	-	0.33	11.2	1.3	1.1	9.5	1.3	1.9	1	0	0	1	1	1	0	LRR	adjacent
Glyco_hydro_3	PF00933.21	gi|336251813|ref|YP_004585781.1|	-	1.5e-77	261.1	0.0	1.9e-77	260.8	0.0	1.1	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	3	N	terminal	domain
Glyco_hydro_3_C	PF01915.22	gi|336251813|ref|YP_004585781.1|	-	5.8e-49	166.8	0.0	8.9e-49	166.2	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	3	C-terminal	domain
Fn3-like	PF14310.6	gi|336251813|ref|YP_004585781.1|	-	9.7e-15	54.4	0.1	1.2e-13	50.9	0.0	2.2	2	0	0	2	2	2	1	Fibronectin	type	III-like	domain
DUF11	PF01345.18	gi|336251813|ref|YP_004585781.1|	-	0.077	13.3	0.2	0.51	10.7	0.2	2.3	1	1	0	1	1	1	0	Domain	of	unknown	function	DUF11
CARDB	PF07705.11	gi|336251813|ref|YP_004585781.1|	-	0.093	13.0	0.0	0.21	11.9	0.0	1.5	1	0	0	1	1	1	0	CARDB
Alginate_lyase	PF05426.12	gi|336251814|ref|YP_004585782.1|	-	0.067	12.7	0.0	0.14	11.7	0.0	1.4	1	0	0	1	1	1	0	Alginate	lyase
GFO_IDH_MocA	PF01408.22	gi|336251815|ref|YP_004585783.1|	-	1.7e-22	80.4	0.0	3e-22	79.7	0.0	1.3	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
GFO_IDH_MocA_C	PF02894.17	gi|336251815|ref|YP_004585783.1|	-	7.6e-07	29.2	0.2	1.3e-06	28.4	0.2	1.3	1	0	0	1	1	1	1	Oxidoreductase	family,	C-terminal	alpha/beta	domain
NAD_binding_2	PF03446.15	gi|336251815|ref|YP_004585783.1|	-	0.014	15.6	0.0	0.025	14.8	0.0	1.4	1	0	0	1	1	1	0	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
Semialdhyde_dh	PF01118.24	gi|336251815|ref|YP_004585783.1|	-	0.088	13.3	0.0	0.18	12.2	0.0	1.6	1	0	0	1	1	1	0	Semialdehyde	dehydrogenase,	NAD	binding	domain
DapB_N	PF01113.20	gi|336251815|ref|YP_004585783.1|	-	0.095	12.8	0.5	0.57	10.3	0.1	2.2	2	1	0	2	2	2	0	Dihydrodipicolinate	reductase,	N-terminus
CoA_binding_2	PF13380.6	gi|336251815|ref|YP_004585783.1|	-	0.11	13.0	0.0	0.22	12.0	0.0	1.4	1	0	0	1	1	1	0	CoA	binding	domain
Glyco_hydro_3	PF00933.21	gi|336251816|ref|YP_004585784.1|	-	3.1e-79	266.6	0.0	4.1e-79	266.3	0.0	1.1	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	3	N	terminal	domain
Glyco_hydro_3_C	PF01915.22	gi|336251816|ref|YP_004585784.1|	-	3.5e-48	164.3	0.0	6.1e-48	163.5	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	3	C-terminal	domain
Fn3-like	PF14310.6	gi|336251816|ref|YP_004585784.1|	-	4.9e-19	68.2	0.1	1e-18	67.2	0.1	1.6	1	0	0	1	1	1	1	Fibronectin	type	III-like	domain
LSDAT_euk	PF18139.1	gi|336251816|ref|YP_004585784.1|	-	0.27	10.6	0.3	0.95	8.8	0.2	1.8	2	0	0	2	2	2	0	SLOG	in	TRPM
TFIIE-A_C	PF11521.8	gi|336251816|ref|YP_004585784.1|	-	0.91	9.9	2.7	8.9	6.7	0.1	3.2	3	0	0	3	3	3	0	C-terminal	general	transcription	factor	TFIIE	alpha
Beta_helix	PF13229.6	gi|336251817|ref|YP_004585785.1|	-	3.4e-06	27.0	0.1	0.012	15.5	0.0	2.3	1	1	1	2	2	2	2	Right	handed	beta	helix	region
DUF1349	PF07081.11	gi|336251817|ref|YP_004585785.1|	-	4.2e-05	23.3	0.0	8.6e-05	22.3	0.0	1.4	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1349)
BPD_transp_1	PF00528.22	gi|336251819|ref|YP_004585787.1|	-	6.6e-31	107.5	13.2	6.6e-31	107.5	13.2	1.7	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
DUF2956	PF11169.8	gi|336251819|ref|YP_004585787.1|	-	0.2	11.9	0.7	0.45	10.7	0.7	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2956)
Renin_r	PF07850.14	gi|336251819|ref|YP_004585787.1|	-	0.28	11.8	0.2	0.28	11.8	0.2	1.8	2	0	0	2	2	2	0	Renin	receptor-like	protein
LapA_dom	PF06305.11	gi|336251819|ref|YP_004585787.1|	-	0.74	9.7	7.5	0.59	10.0	3.0	2.7	2	0	0	2	2	2	0	Lipopolysaccharide	assembly	protein	A	domain
BPD_transp_1	PF00528.22	gi|336251820|ref|YP_004585788.1|	-	9.2e-24	84.2	10.5	9.2e-24	84.2	10.5	1.7	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
OppC_N	PF12911.7	gi|336251820|ref|YP_004585788.1|	-	0.00037	20.4	0.5	0.0011	18.9	0.0	2.0	2	0	0	2	2	2	1	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
DUF3927	PF13064.6	gi|336251820|ref|YP_004585788.1|	-	0.043	13.8	0.9	0.1	12.6	0.9	1.6	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3927)
ABC_tran	PF00005.27	gi|336251821|ref|YP_004585789.1|	-	1.2e-52	178.1	0.0	4.3e-29	101.8	0.0	2.2	2	0	0	2	2	2	2	ABC	transporter
oligo_HPY	PF08352.12	gi|336251821|ref|YP_004585789.1|	-	3e-34	117.3	4.4	6e-17	61.9	0.1	2.5	2	0	0	2	2	2	2	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|336251821|ref|YP_004585789.1|	-	1.5e-17	64.3	3.3	8.9e-08	32.3	0.3	4.2	3	1	1	4	4	4	3	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_22	PF13401.6	gi|336251821|ref|YP_004585789.1|	-	3.7e-09	37.0	1.0	0.0015	18.8	0.0	3.5	2	2	0	2	2	2	2	AAA	domain
SMC_N	PF02463.19	gi|336251821|ref|YP_004585789.1|	-	1.9e-07	30.8	0.1	0.082	12.3	0.0	3.6	3	1	0	3	3	3	2	RecF/RecN/SMC	N	terminal	domain
IstB_IS21	PF01695.17	gi|336251821|ref|YP_004585789.1|	-	1.3e-06	28.3	0.1	0.16	11.7	0.0	3.2	3	0	0	3	3	3	2	IstB-like	ATP	binding	protein
AAA_29	PF13555.6	gi|336251821|ref|YP_004585789.1|	-	2.4e-06	27.2	0.1	0.017	14.8	0.0	2.4	2	0	0	2	2	2	2	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.6	gi|336251821|ref|YP_004585789.1|	-	1e-05	26.0	0.0	0.22	11.9	0.0	2.5	2	0	0	2	2	2	2	AAA	ATPase	domain
AAA_25	PF13481.6	gi|336251821|ref|YP_004585789.1|	-	1.6e-05	24.6	0.0	0.45	10.1	0.0	3.3	3	0	0	3	3	3	2	AAA	domain
RsgA_GTPase	PF03193.16	gi|336251821|ref|YP_004585789.1|	-	3.5e-05	23.8	0.1	0.12	12.3	0.0	2.3	2	0	0	2	2	2	2	RsgA	GTPase
PhoH	PF02562.16	gi|336251821|ref|YP_004585789.1|	-	5.5e-05	22.7	0.0	0.21	11.0	0.0	2.3	2	0	0	2	2	2	2	PhoH-like	protein
NACHT	PF05729.12	gi|336251821|ref|YP_004585789.1|	-	5.9e-05	23.0	1.5	0.23	11.3	0.0	2.4	2	0	0	2	2	2	2	NACHT	domain
AAA_23	PF13476.6	gi|336251821|ref|YP_004585789.1|	-	7.5e-05	23.3	0.0	0.71	10.3	0.1	2.3	2	0	0	2	2	2	2	AAA	domain
MobB	PF03205.14	gi|336251821|ref|YP_004585789.1|	-	0.00019	21.3	0.1	0.75	9.7	0.0	2.6	2	1	0	2	2	2	2	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
NB-ARC	PF00931.22	gi|336251821|ref|YP_004585789.1|	-	0.00022	20.5	0.0	0.21	10.8	0.0	2.3	2	0	0	2	2	2	2	NB-ARC	domain
RNA_helicase	PF00910.22	gi|336251821|ref|YP_004585789.1|	-	0.00033	21.0	0.0	1.5	9.2	0.0	2.5	2	0	0	2	2	2	2	RNA	helicase
AAA_24	PF13479.6	gi|336251821|ref|YP_004585789.1|	-	0.00071	19.4	0.0	0.66	9.7	0.0	2.5	2	0	0	2	2	2	2	AAA	domain
ATPase	PF06745.13	gi|336251821|ref|YP_004585789.1|	-	0.00074	18.9	0.1	0.48	9.7	0.1	2.6	2	0	0	2	2	2	1	KaiC
AAA_33	PF13671.6	gi|336251821|ref|YP_004585789.1|	-	0.0019	18.3	0.2	0.92	9.7	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
AAA_15	PF13175.6	gi|336251821|ref|YP_004585789.1|	-	0.0023	17.7	0.6	2.1	8.0	0.0	3.0	3	0	0	3	3	3	1	AAA	ATPase	domain
AAA_7	PF12775.7	gi|336251821|ref|YP_004585789.1|	-	0.0026	17.3	0.0	6.3	6.3	0.0	3.2	3	0	0	3	3	3	0	P-loop	containing	dynein	motor	region
AAA	PF00004.29	gi|336251821|ref|YP_004585789.1|	-	0.0063	16.9	0.0	2.3	8.6	0.0	3.0	3	0	0	3	3	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
Mg_chelatase	PF01078.21	gi|336251821|ref|YP_004585789.1|	-	0.0071	15.7	0.0	1.2	8.5	0.0	2.5	2	0	0	2	2	2	1	Magnesium	chelatase,	subunit	ChlI
Sigma54_activat	PF00158.26	gi|336251821|ref|YP_004585789.1|	-	0.0078	15.9	0.0	1.6	8.4	0.0	2.4	2	0	0	2	2	2	1	Sigma-54	interaction	domain
Roc	PF08477.13	gi|336251821|ref|YP_004585789.1|	-	0.01	16.0	0.3	3.8	7.7	0.1	2.4	2	0	0	2	2	2	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
AAA_30	PF13604.6	gi|336251821|ref|YP_004585789.1|	-	0.014	15.2	0.0	2.3	7.9	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
Zeta_toxin	PF06414.12	gi|336251821|ref|YP_004585789.1|	-	0.014	14.6	0.0	4.7	6.4	0.0	2.6	2	0	0	2	2	2	0	Zeta	toxin
MMR_HSR1	PF01926.23	gi|336251821|ref|YP_004585789.1|	-	0.021	14.9	0.1	4.5	7.4	0.1	2.7	2	0	0	2	2	2	0	50S	ribosome-binding	GTPase
AAA_5	PF07728.14	gi|336251821|ref|YP_004585789.1|	-	0.023	14.7	6.0	2	8.4	0.2	3.3	4	0	0	4	4	3	0	AAA	domain	(dynein-related	subfamily)
DUF87	PF01935.17	gi|336251821|ref|YP_004585789.1|	-	0.03	14.4	0.0	0.099	12.7	0.0	1.8	1	0	0	1	1	1	0	Helicase	HerA,	central	domain
TsaE	PF02367.17	gi|336251821|ref|YP_004585789.1|	-	0.045	13.8	0.0	1.5	8.9	0.0	2.3	2	0	0	2	2	2	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA_18	PF13238.6	gi|336251821|ref|YP_004585789.1|	-	0.058	13.9	0.0	4.7	7.8	0.0	2.6	2	0	0	2	2	2	0	AAA	domain
ABC_ATPase	PF09818.9	gi|336251821|ref|YP_004585789.1|	-	0.06	12.1	0.3	3.8	6.2	0.0	3.1	4	0	0	4	4	4	0	Predicted	ATPase	of	the	ABC	class
PduV-EutP	PF10662.9	gi|336251821|ref|YP_004585789.1|	-	0.089	12.5	0.3	0.69	9.6	0.1	2.2	2	0	0	2	2	2	0	Ethanolamine	utilisation	-	propanediol	utilisation
ATPase_2	PF01637.18	gi|336251821|ref|YP_004585789.1|	-	0.14	12.1	0.0	2.2	8.1	0.0	2.3	2	0	0	2	2	2	0	ATPase	domain	predominantly	from	Archaea
PRK	PF00485.18	gi|336251821|ref|YP_004585789.1|	-	0.2	11.4	0.5	15	5.2	0.0	2.3	2	0	0	2	2	2	0	Phosphoribulokinase	/	Uridine	kinase	family
SBP_bac_5	PF00496.22	gi|336251822|ref|YP_004585790.1|	-	2.4e-35	122.2	0.1	4.2e-35	121.4	0.1	1.3	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
TAT_signal	PF10518.9	gi|336251822|ref|YP_004585790.1|	-	0.0025	17.6	1.7	0.0046	16.8	1.7	1.4	1	0	0	1	1	1	1	TAT	(twin-arginine	translocation)	pathway	signal	sequence
EPSP_synthase	PF00275.20	gi|336251822|ref|YP_004585790.1|	-	0.2	10.3	0.0	0.29	9.8	0.0	1.1	1	0	0	1	1	1	0	EPSP	synthase	(3-phosphoshikimate	1-carboxyvinyltransferase)
adh_short_C2	PF13561.6	gi|336251823|ref|YP_004585791.1|	-	3.5e-63	213.3	3.0	4.5e-63	212.9	3.0	1.1	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|336251823|ref|YP_004585791.1|	-	2.4e-54	183.8	0.4	2.8e-54	183.5	0.4	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|336251823|ref|YP_004585791.1|	-	9.8e-11	41.9	0.4	1.3e-10	41.4	0.4	1.2	1	0	0	1	1	1	1	KR	domain
Epimerase	PF01370.21	gi|336251823|ref|YP_004585791.1|	-	0.0014	18.1	0.2	0.0023	17.4	0.2	1.3	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
Acetyltransf_6	PF13480.7	gi|336251823|ref|YP_004585791.1|	-	0.091	12.9	2.0	8.9	6.5	0.3	2.2	2	0	0	2	2	2	0	Acetyltransferase	(GNAT)	domain
COX14	PF14880.6	gi|336251824|ref|YP_004585792.1|	-	0.085	12.7	0.5	0.085	12.7	0.5	1.9	2	1	0	2	2	2	0	Cytochrome	oxidase	c	assembly
DUF2892	PF11127.8	gi|336251824|ref|YP_004585792.1|	-	0.65	10.1	11.3	0.83	9.7	11.3	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2892)
Phage_holin_3_6	PF07332.11	gi|336251824|ref|YP_004585792.1|	-	1.2	9.2	10.4	1.5	8.9	10.4	1.1	1	0	0	1	1	1	0	Putative	Actinobacterial	Holin-X,	holin	superfamily	III
DUF3040	PF11239.8	gi|336251824|ref|YP_004585792.1|	-	4.7	7.5	11.7	7.4	6.9	11.1	1.6	1	1	0	1	1	1	0	Protein	of	unknown	function	(DUF3040)
Neurensin	PF14927.6	gi|336251824|ref|YP_004585792.1|	-	8.5	6.1	8.8	0.89	9.3	2.7	1.9	1	1	1	2	2	2	0	Neurensin
Epimerase	PF01370.21	gi|336251825|ref|YP_004585793.1|	-	6e-19	68.5	0.1	9.4e-19	67.8	0.1	1.4	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
GDP_Man_Dehyd	PF16363.5	gi|336251825|ref|YP_004585793.1|	-	6.6e-13	48.7	0.3	3e-12	46.6	0.3	2.2	1	1	0	1	1	1	1	GDP-mannose	4,6	dehydratase
3Beta_HSD	PF01073.19	gi|336251825|ref|YP_004585793.1|	-	6.9e-13	48.2	0.0	1.1e-12	47.6	0.0	1.3	1	1	0	1	1	1	1	3-beta	hydroxysteroid	dehydrogenase/isomerase	family
Polysacc_synt_2	PF02719.15	gi|336251825|ref|YP_004585793.1|	-	6.1e-11	42.0	0.0	1.8e-09	37.2	0.0	2.5	1	1	1	2	2	2	1	Polysaccharide	biosynthesis	protein
NAD_binding_10	PF13460.6	gi|336251825|ref|YP_004585793.1|	-	3.8e-08	33.5	0.0	5.2e-08	33.0	0.0	1.2	1	0	0	1	1	1	1	NAD(P)H-binding
NAD_binding_4	PF07993.12	gi|336251825|ref|YP_004585793.1|	-	5.2e-08	32.4	0.0	7.2e-08	31.9	0.0	1.2	1	0	0	1	1	1	1	Male	sterility	protein
RmlD_sub_bind	PF04321.17	gi|336251825|ref|YP_004585793.1|	-	7e-08	31.9	0.0	1.3e-07	31.0	0.0	1.4	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
KR	PF08659.10	gi|336251825|ref|YP_004585793.1|	-	0.042	13.8	0.0	3.3	7.6	0.0	2.2	1	1	0	1	1	1	0	KR	domain
MR_MLE_C	PF13378.6	gi|336251826|ref|YP_004585794.1|	-	9.1e-64	215.0	0.4	1.3e-63	214.5	0.4	1.2	1	0	0	1	1	1	1	Enolase	C-terminal	domain-like
MR_MLE_N	PF02746.16	gi|336251826|ref|YP_004585794.1|	-	1.3e-14	54.4	0.0	3.5e-14	53.0	0.0	1.7	2	0	0	2	2	2	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	N-terminal	domain
Lipase_GDSL_2	PF13472.6	gi|336251827|ref|YP_004585795.1|	-	2.7e-20	73.5	0.0	3.4e-20	73.2	0.0	1.1	1	0	0	1	1	1	1	GDSL-like	Lipase/Acylhydrolase	family
Lipase_GDSL	PF00657.22	gi|336251827|ref|YP_004585795.1|	-	2.5e-08	34.1	0.0	3.1e-08	33.8	0.0	1.2	1	0	0	1	1	1	1	GDSL-like	Lipase/Acylhydrolase
DHDPS	PF00701.22	gi|336251828|ref|YP_004585796.1|	-	1.2e-36	125.9	0.0	1.5e-36	125.6	0.0	1.1	1	0	0	1	1	1	1	Dihydrodipicolinate	synthetase	family
Asp_Glu_race	PF01177.22	gi|336251828|ref|YP_004585796.1|	-	0.056	13.3	0.0	0.091	12.6	0.0	1.5	1	0	0	1	1	1	0	Asp/Glu/Hydantoin	racemase
ThuA	PF06283.11	gi|336251829|ref|YP_004585797.1|	-	5.5e-34	118.2	0.0	6.5e-34	118.0	0.0	1.1	1	0	0	1	1	1	1	Trehalose	utilisation
DUF1349	PF07081.11	gi|336251830|ref|YP_004585798.1|	-	2.1e-08	34.1	0.2	2.3e-07	30.7	0.2	2.3	1	1	0	1	1	1	1	Protein	of	unknown	function	(DUF1349)
Pec_lyase_C	PF00544.19	gi|336251830|ref|YP_004585798.1|	-	0.0022	17.6	1.6	0.014	15.0	1.6	2.2	1	1	0	1	1	1	1	Pectate	lyase
DUF1583	PF07622.11	gi|336251830|ref|YP_004585798.1|	-	0.024	13.4	0.0	0.045	12.5	0.0	1.4	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF1583)
MR_MLE_C	PF13378.6	gi|336251831|ref|YP_004585799.1|	-	4.4e-67	225.9	3.9	5.8e-67	225.5	3.9	1.1	1	0	0	1	1	1	1	Enolase	C-terminal	domain-like
MR_MLE_N	PF02746.16	gi|336251831|ref|YP_004585799.1|	-	1.6e-20	73.5	0.0	4.2e-20	72.1	0.0	1.7	1	0	0	1	1	1	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	N-terminal	domain
Bac_luciferase	PF00296.20	gi|336251832|ref|YP_004585800.1|	-	2.2e-50	171.9	0.0	3e-50	171.4	0.0	1.1	1	0	0	1	1	1	1	Luciferase-like	monooxygenase
Abhydrolase_7	PF12715.7	gi|336251833|ref|YP_004585801.1|	-	8e-22	78.0	0.0	2.4e-21	76.5	0.0	1.6	1	1	0	1	1	1	1	Abhydrolase	family
AXE1	PF05448.12	gi|336251833|ref|YP_004585801.1|	-	3.3e-06	26.0	0.0	6.5e-06	25.0	0.0	1.4	1	0	0	1	1	1	1	Acetyl	xylan	esterase	(AXE1)
Abhydrolase_6	PF12697.7	gi|336251833|ref|YP_004585801.1|	-	9.4e-06	26.4	6.0	9.4e-06	26.4	6.0	2.0	1	1	1	2	2	2	1	Alpha/beta	hydrolase	family
DLH	PF01738.18	gi|336251833|ref|YP_004585801.1|	-	1e-05	25.2	0.1	3.3e-05	23.5	0.1	1.8	1	1	0	1	1	1	1	Dienelactone	hydrolase	family
Peptidase_S9	PF00326.21	gi|336251833|ref|YP_004585801.1|	-	0.00052	19.5	0.0	0.0093	15.5	0.0	2.2	1	1	0	1	1	1	1	Prolyl	oligopeptidase	family
Esterase_phd	PF10503.9	gi|336251833|ref|YP_004585801.1|	-	0.0087	15.6	0.5	0.0087	15.6	0.5	1.6	2	0	0	2	2	2	1	Esterase	PHB	depolymerase
Abhydrolase_1	PF00561.20	gi|336251833|ref|YP_004585801.1|	-	0.011	15.3	0.0	0.073	12.7	0.0	1.9	1	1	1	2	2	2	0	alpha/beta	hydrolase	fold
Hydrolase_4	PF12146.8	gi|336251833|ref|YP_004585801.1|	-	0.027	13.7	1.2	5	6.3	0.0	3.3	3	1	0	3	3	3	0	Serine	aminopeptidase,	S33
BAAT_C	PF08840.11	gi|336251833|ref|YP_004585801.1|	-	0.068	13.1	0.0	0.1	12.5	0.0	1.2	1	0	0	1	1	1	0	BAAT	/	Acyl-CoA	thioester	hydrolase	C	terminal
Lipase_3	PF01764.25	gi|336251833|ref|YP_004585801.1|	-	0.085	12.7	0.0	0.15	11.9	0.0	1.4	1	0	0	1	1	1	0	Lipase	(class	3)
Esterase	PF00756.20	gi|336251833|ref|YP_004585801.1|	-	0.087	12.5	0.1	2	8.0	0.0	2.6	3	0	0	3	3	3	0	Putative	esterase
LIP	PF03583.14	gi|336251833|ref|YP_004585801.1|	-	0.13	11.5	0.0	0.41	9.9	0.0	1.8	2	0	0	2	2	2	0	Secretory	lipase
DHDPS	PF00701.22	gi|336251834|ref|YP_004585802.1|	-	4.5e-36	124.0	0.0	5.6e-36	123.7	0.0	1.1	1	0	0	1	1	1	1	Dihydrodipicolinate	synthetase	family
DUF2569	PF10754.9	gi|336251835|ref|YP_004585803.1|	-	0.039	14.4	0.5	0.047	14.1	0.5	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2569)
TPP_enzyme_N	PF02776.18	gi|336251836|ref|YP_004585804.1|	-	2.2e-39	134.8	0.0	1.8e-33	115.6	0.0	2.3	2	0	0	2	2	2	2	Thiamine	pyrophosphate	enzyme,	N-terminal	TPP	binding	domain
TPP_enzyme_C	PF02775.21	gi|336251836|ref|YP_004585804.1|	-	4.6e-38	130.4	0.0	8.7e-38	129.5	0.0	1.5	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	C-terminal	TPP	binding	domain
TPP_enzyme_M	PF00205.22	gi|336251836|ref|YP_004585804.1|	-	5.7e-32	110.3	0.0	1.2e-31	109.3	0.0	1.6	1	0	0	1	1	1	1	Thiamine	pyrophosphate	enzyme,	central	domain
Glyco_hydro_28	PF00295.17	gi|336251837|ref|YP_004585805.1|	-	1e-50	172.7	1.2	1.3e-48	165.8	0.6	2.5	2	1	0	2	2	2	1	Glycosyl	hydrolases	family	28
Pectate_lyase_3	PF12708.7	gi|336251837|ref|YP_004585805.1|	-	1.6e-13	51.0	2.4	2e-06	27.8	0.0	3.5	2	1	2	4	4	4	2	Pectate	lyase	superfamily	protein
Beta_helix	PF13229.6	gi|336251837|ref|YP_004585805.1|	-	1.1e-08	35.1	16.0	3.7e-07	30.1	7.6	2.7	2	1	1	3	3	3	2	Right	handed	beta	helix	region
NosD	PF05048.13	gi|336251837|ref|YP_004585805.1|	-	0.0021	17.3	0.5	0.0021	17.3	0.5	3.1	1	1	2	3	3	3	2	Periplasmic	copper-binding	protein	(NosD)
DUF4957	PF16318.5	gi|336251837|ref|YP_004585805.1|	-	0.067	13.1	0.6	0.5	10.3	0.3	2.6	1	1	1	2	2	2	0	Domain	of	unknown	function	(DUF4957)
GFO_IDH_MocA	PF01408.22	gi|336251838|ref|YP_004585806.1|	-	9.5e-26	91.0	0.1	1.8e-25	90.1	0.1	1.4	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
GFO_IDH_MocA_C	PF02894.17	gi|336251838|ref|YP_004585806.1|	-	2.5e-12	46.8	0.1	4.4e-12	46.0	0.1	1.4	1	0	0	1	1	1	1	Oxidoreductase	family,	C-terminal	alpha/beta	domain
Semialdhyde_dh	PF01118.24	gi|336251838|ref|YP_004585806.1|	-	0.0049	17.3	0.1	0.0098	16.3	0.1	1.5	1	0	0	1	1	1	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
ox_reductase_C	PF08635.10	gi|336251838|ref|YP_004585806.1|	-	0.016	14.9	0.1	0.044	13.4	0.0	1.6	1	1	0	1	1	1	0	Putative	oxidoreductase	C	terminal	domain
CoA_binding_2	PF13380.6	gi|336251838|ref|YP_004585806.1|	-	0.088	13.3	0.1	0.2	12.2	0.1	1.7	1	0	0	1	1	1	0	CoA	binding	domain
F420_oxidored	PF03807.17	gi|336251838|ref|YP_004585806.1|	-	0.12	12.9	0.5	0.3	11.7	0.1	1.9	2	0	0	2	2	2	0	NADP	oxidoreductase	coenzyme	F420-dependent
DUF296	PF03479.15	gi|336251839|ref|YP_004585807.1|	-	1.2e-18	67.4	0.0	1.5e-18	67.1	0.0	1.1	1	0	0	1	1	1	1	Plants	and	Prokaryotes	Conserved	(PCC)	domain
F420_oxidored	PF03807.17	gi|336251840|ref|YP_004585808.1|	-	1.5e-16	60.8	0.0	2.5e-16	60.0	0.0	1.4	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
Sacchrp_dh_NADP	PF03435.18	gi|336251840|ref|YP_004585808.1|	-	3.4e-05	24.1	0.0	6.2e-05	23.3	0.0	1.4	1	0	0	1	1	1	1	Saccharopine	dehydrogenase	NADP	binding	domain
ApbA	PF02558.16	gi|336251840|ref|YP_004585808.1|	-	5.3e-05	22.9	0.0	6.5e-05	22.6	0.0	1.2	1	0	0	1	1	1	1	Ketopantoate	reductase	PanE/ApbA
NAD_Gly3P_dh_N	PF01210.23	gi|336251840|ref|YP_004585808.1|	-	5.9e-05	23.1	0.0	7.6e-05	22.7	0.0	1.2	1	0	0	1	1	1	1	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
Semialdhyde_dh	PF01118.24	gi|336251840|ref|YP_004585808.1|	-	0.00016	22.1	0.0	0.00029	21.3	0.0	1.5	1	1	0	1	1	1	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
IlvN	PF07991.12	gi|336251840|ref|YP_004585808.1|	-	0.00058	19.5	0.0	0.0014	18.2	0.0	1.6	1	1	0	1	1	1	1	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
NAD_binding_10	PF13460.6	gi|336251840|ref|YP_004585808.1|	-	0.00062	19.7	0.1	0.00093	19.1	0.1	1.3	1	0	0	1	1	1	1	NAD(P)H-binding
NAD_binding_2	PF03446.15	gi|336251840|ref|YP_004585808.1|	-	0.0038	17.4	0.0	0.0068	16.6	0.0	1.4	1	0	0	1	1	1	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
PDH	PF02153.17	gi|336251840|ref|YP_004585808.1|	-	0.013	14.6	0.0	0.018	14.0	0.0	1.2	1	0	0	1	1	1	0	Prephenate	dehydrogenase
Pilus_CpaD	PF09476.10	gi|336251840|ref|YP_004585808.1|	-	0.021	14.5	0.1	0.034	13.9	0.1	1.2	1	0	0	1	1	1	0	Pilus	biogenesis	CpaD	protein	(pilus_cpaD)
KR	PF08659.10	gi|336251840|ref|YP_004585808.1|	-	0.023	14.6	0.6	0.032	14.1	0.1	1.4	2	0	0	2	2	2	0	KR	domain
EccE	PF11203.8	gi|336251840|ref|YP_004585808.1|	-	0.03	14.7	0.2	0.085	13.2	0.1	1.8	2	0	0	2	2	2	0	Putative	type	VII	ESX	secretion	system	translocon,	EccE
MR_MLE_C	PF13378.6	gi|336251841|ref|YP_004585809.1|	-	8.4e-43	146.5	0.4	1.2e-42	146.0	0.4	1.2	1	0	0	1	1	1	1	Enolase	C-terminal	domain-like
MR_MLE_N	PF02746.16	gi|336251841|ref|YP_004585809.1|	-	6.2e-13	49.0	0.0	1.2e-12	48.1	0.0	1.4	1	0	0	1	1	1	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	N-terminal	domain
IclR	PF01614.18	gi|336251842|ref|YP_004585810.1|	-	4.6e-37	126.7	0.0	8.6e-37	125.8	0.0	1.4	1	0	0	1	1	1	1	Bacterial	transcriptional	regulator
HTH_IclR	PF09339.10	gi|336251842|ref|YP_004585810.1|	-	4.2e-11	42.5	0.0	1.1e-10	41.1	0.0	1.8	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_24	PF13412.6	gi|336251842|ref|YP_004585810.1|	-	7.8e-08	31.8	0.0	1.4e-07	30.9	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.20	gi|336251842|ref|YP_004585810.1|	-	4.2e-06	26.5	0.0	1.1e-05	25.2	0.0	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.7	gi|336251842|ref|YP_004585810.1|	-	3e-05	23.8	0.0	7.7e-05	22.5	0.0	1.7	1	0	0	1	1	1	1	MarR	family
HTH_20	PF12840.7	gi|336251842|ref|YP_004585810.1|	-	0.00019	21.4	0.0	0.00045	20.2	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_38	PF13936.6	gi|336251842|ref|YP_004585810.1|	-	0.0018	18.0	0.1	0.0051	16.5	0.1	1.8	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_11	PF08279.12	gi|336251842|ref|YP_004585810.1|	-	0.0041	17.0	0.1	0.022	14.7	0.0	2.2	2	0	0	2	2	2	1	HTH	domain
TrmB	PF01978.19	gi|336251842|ref|YP_004585810.1|	-	0.0042	16.9	0.0	0.011	15.6	0.0	1.7	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_40	PF14493.6	gi|336251842|ref|YP_004585810.1|	-	0.0097	16.3	0.5	0.035	14.6	0.2	2.1	1	1	1	2	2	2	1	Helix-turn-helix	domain
HTH_AsnC-type	PF13404.6	gi|336251842|ref|YP_004585810.1|	-	0.01	15.7	0.0	0.022	14.6	0.0	1.6	1	0	0	1	1	1	1	AsnC-type	helix-turn-helix	domain
MarR	PF01047.22	gi|336251842|ref|YP_004585810.1|	-	0.01	15.7	0.0	0.023	14.6	0.0	1.5	1	0	0	1	1	1	0	MarR	family
GerE	PF00196.19	gi|336251842|ref|YP_004585810.1|	-	0.018	14.6	0.1	0.033	13.7	0.1	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	luxR	family
HTH_DeoR	PF08220.12	gi|336251842|ref|YP_004585810.1|	-	0.02	14.7	0.1	0.046	13.5	0.1	1.6	1	0	0	1	1	1	0	DeoR-like	helix-turn-helix	domain
NlpE	PF04170.12	gi|336251842|ref|YP_004585810.1|	-	0.022	15.7	0.0	0.044	14.7	0.0	1.4	1	0	0	1	1	1	0	NlpE	N-terminal	domain
RepL	PF05732.11	gi|336251842|ref|YP_004585810.1|	-	0.025	14.0	0.1	0.065	12.7	0.1	1.6	1	1	1	2	2	2	0	Firmicute	plasmid	replication	protein	(RepL)
SpoIIID	PF12116.8	gi|336251842|ref|YP_004585810.1|	-	0.03	14.4	0.5	0.082	13.0	0.0	2.1	2	1	0	2	2	1	0	Stage	III	sporulation	protein	D
GAF	PF01590.26	gi|336251842|ref|YP_004585810.1|	-	0.033	14.8	0.0	0.048	14.3	0.0	1.4	1	0	0	1	1	1	0	GAF	domain
HTH_10	PF04967.12	gi|336251842|ref|YP_004585810.1|	-	0.037	13.8	0.1	0.13	12.1	0.0	1.9	2	0	0	2	2	2	0	HTH	DNA	binding	domain
HTH_34	PF13601.6	gi|336251842|ref|YP_004585810.1|	-	0.038	14.2	0.0	0.084	13.1	0.0	1.6	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
GAF_2	PF13185.6	gi|336251842|ref|YP_004585810.1|	-	0.049	13.9	0.0	0.078	13.3	0.0	1.7	1	1	0	1	1	1	0	GAF	domain
B-block_TFIIIC	PF04182.12	gi|336251842|ref|YP_004585810.1|	-	0.049	13.8	0.0	0.089	13.0	0.0	1.4	1	0	0	1	1	1	0	B-block	binding	subunit	of	TFIIIC
HTH_45	PF14947.6	gi|336251842|ref|YP_004585810.1|	-	0.07	13.1	0.0	0.15	12.0	0.0	1.5	1	0	0	1	1	1	0	Winged	helix-turn-helix
HTH_36	PF13730.6	gi|336251842|ref|YP_004585810.1|	-	0.16	11.9	0.1	0.95	9.5	0.0	2.2	2	1	0	2	2	2	0	Helix-turn-helix	domain
Bac_luciferase	PF00296.20	gi|336251843|ref|YP_004585811.1|	-	6.1e-51	173.7	0.0	7.8e-51	173.3	0.0	1.1	1	0	0	1	1	1	1	Luciferase-like	monooxygenase
SBP_bac_1	PF01547.25	gi|336251844|ref|YP_004585812.1|	-	1.7e-21	77.5	2.8	5.4e-21	75.9	2.8	1.7	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
SBP_bac_8	PF13416.6	gi|336251844|ref|YP_004585812.1|	-	2.2e-20	73.6	0.4	3.6e-20	72.9	0.4	1.2	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein
TAT_signal	PF10518.9	gi|336251844|ref|YP_004585812.1|	-	0.061	13.2	0.8	0.061	13.2	0.8	1.9	2	0	0	2	2	2	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
UCR_Fe-S_N	PF10399.9	gi|336251844|ref|YP_004585812.1|	-	0.062	12.7	0.3	0.15	11.4	0.3	1.6	1	0	0	1	1	1	0	Ubiquitinol-cytochrome	C	reductase	Fe-S	subunit	TAT	signal
Phage_ABA_S	PF18066.1	gi|336251844|ref|YP_004585812.1|	-	0.11	13.2	0.3	28	5.5	0.0	2.9	3	0	0	3	3	3	0	Phage	ABA	sandwich	domain
BPD_transp_1	PF00528.22	gi|336251845|ref|YP_004585813.1|	-	3.8e-19	69.2	17.8	3.8e-19	69.2	17.8	1.7	2	0	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
Col_cuticle_N	PF01484.17	gi|336251845|ref|YP_004585813.1|	-	0.16	12.0	0.3	0.16	12.0	0.3	4.0	4	0	0	4	4	4	0	Nematode	cuticle	collagen	N-terminal	domain
DUF3671	PF12420.8	gi|336251845|ref|YP_004585813.1|	-	2.3	8.3	7.9	25	5.0	0.7	3.6	3	2	0	3	3	3	0	Protein	of	unknown	function
BPD_transp_1	PF00528.22	gi|336251846|ref|YP_004585814.1|	-	1.1e-14	54.6	17.7	1.1e-14	54.6	17.7	2.1	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
ABC_tran	PF00005.27	gi|336251847|ref|YP_004585815.1|	-	2.8e-33	115.3	0.0	5.4e-33	114.4	0.0	1.5	1	0	0	1	1	1	1	ABC	transporter
OB_MalK	PF17912.1	gi|336251847|ref|YP_004585815.1|	-	4e-10	40.4	0.0	1.5e-09	38.5	0.0	2.1	1	0	0	1	1	1	1	MalK	OB	fold	domain
AAA_21	PF13304.6	gi|336251847|ref|YP_004585815.1|	-	4.8e-06	26.6	0.0	0.066	13.0	0.0	2.2	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
CysA_C_terminal	PF17850.1	gi|336251847|ref|YP_004585815.1|	-	6.2e-06	26.7	0.7	2.3e-05	24.9	0.5	2.2	2	0	0	2	2	2	1	CysA	C-terminal	regulatory	domain
TOBE_2	PF08402.10	gi|336251847|ref|YP_004585815.1|	-	4e-05	23.7	0.1	0.0069	16.5	0.1	2.6	1	1	0	1	1	1	1	TOBE	domain
Rad17	PF03215.15	gi|336251847|ref|YP_004585815.1|	-	6.8e-05	22.9	0.0	0.00012	22.1	0.0	1.3	1	0	0	1	1	1	1	Rad17	P-loop	domain
SMC_N	PF02463.19	gi|336251847|ref|YP_004585815.1|	-	0.00017	21.1	0.1	0.00052	19.5	0.1	1.8	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_29	PF13555.6	gi|336251847|ref|YP_004585815.1|	-	0.0047	16.6	0.0	0.011	15.5	0.0	1.6	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.6	gi|336251847|ref|YP_004585815.1|	-	0.0052	17.2	0.0	0.011	16.2	0.0	1.5	1	1	0	1	1	1	1	AAA	ATPase	domain
AAA_5	PF07728.14	gi|336251847|ref|YP_004585815.1|	-	0.0093	16.0	0.0	0.023	14.7	0.0	1.7	1	0	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
AAA_15	PF13175.6	gi|336251847|ref|YP_004585815.1|	-	0.0095	15.7	0.0	0.022	14.5	0.0	1.5	1	1	1	2	2	2	1	AAA	ATPase	domain
AAA_22	PF13401.6	gi|336251847|ref|YP_004585815.1|	-	0.011	16.0	0.0	0.026	14.8	0.0	1.6	1	0	0	1	1	1	0	AAA	domain
AAA	PF00004.29	gi|336251847|ref|YP_004585815.1|	-	0.021	15.2	0.0	0.042	14.3	0.0	1.7	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
RsgA_GTPase	PF03193.16	gi|336251847|ref|YP_004585815.1|	-	0.038	13.9	0.0	0.083	12.8	0.0	1.5	1	0	0	1	1	1	0	RsgA	GTPase
AAA_23	PF13476.6	gi|336251847|ref|YP_004585815.1|	-	0.092	13.2	0.0	0.16	12.5	0.0	1.5	1	0	0	1	1	1	0	AAA	domain
GFO_IDH_MocA	PF01408.22	gi|336251849|ref|YP_004585817.1|	-	1.7e-22	80.5	0.0	3.6e-22	79.4	0.0	1.6	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
CoA_binding	PF02629.19	gi|336251849|ref|YP_004585817.1|	-	0.0092	16.6	0.0	0.018	15.7	0.0	1.5	1	0	0	1	1	1	1	CoA	binding	domain
GFO_IDH_MocA_C	PF02894.17	gi|336251849|ref|YP_004585817.1|	-	0.031	14.3	0.0	0.063	13.3	0.0	1.5	1	0	0	1	1	1	0	Oxidoreductase	family,	C-terminal	alpha/beta	domain
F420_oxidored	PF03807.17	gi|336251849|ref|YP_004585817.1|	-	0.038	14.6	0.0	0.083	13.5	0.0	1.6	1	0	0	1	1	1	0	NADP	oxidoreductase	coenzyme	F420-dependent
TrkA_N	PF02254.18	gi|336251849|ref|YP_004585817.1|	-	0.11	12.7	0.2	0.33	11.2	0.1	1.9	2	0	0	2	2	2	0	TrkA-N	domain
Methyltransf_25	PF13649.6	gi|336251850|ref|YP_004585818.1|	-	2.5e-17	63.4	0.0	4.4e-17	62.6	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|336251850|ref|YP_004585818.1|	-	1.1e-15	57.7	0.0	2.2e-15	56.8	0.0	1.4	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|336251850|ref|YP_004585818.1|	-	2.5e-13	50.5	0.1	1.3e-12	48.2	0.0	2.0	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_12	PF08242.12	gi|336251850|ref|YP_004585818.1|	-	7.7e-10	39.4	0.0	1.7e-09	38.3	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|336251850|ref|YP_004585818.1|	-	2.8e-09	36.7	0.0	3.6e-08	33.0	0.0	1.9	1	1	0	2	2	2	1	ubiE/COQ5	methyltransferase	family
MTS	PF05175.14	gi|336251850|ref|YP_004585818.1|	-	3.2e-08	33.3	0.0	5.8e-08	32.5	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	small	domain
Methyltransf_23	PF13489.6	gi|336251850|ref|YP_004585818.1|	-	1.1e-07	31.8	0.0	1.6e-07	31.3	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
PrmA	PF06325.13	gi|336251850|ref|YP_004585818.1|	-	3.5e-06	26.6	0.1	5.4e-06	26.0	0.1	1.2	1	0	0	1	1	1	1	Ribosomal	protein	L11	methyltransferase	(PrmA)
Methyltransf_18	PF12847.7	gi|336251850|ref|YP_004585818.1|	-	0.007	16.3	0.2	0.015	15.3	0.0	1.6	2	0	0	2	2	2	1	Methyltransferase	domain
Methyltransf_32	PF13679.6	gi|336251850|ref|YP_004585818.1|	-	0.074	13.0	0.0	0.14	12.2	0.0	1.5	2	0	0	2	2	2	0	Methyltransferase	domain
PCMT	PF01135.19	gi|336251850|ref|YP_004585818.1|	-	0.076	12.8	0.0	0.13	12.0	0.0	1.3	1	0	0	1	1	1	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
DREV	PF05219.12	gi|336251850|ref|YP_004585818.1|	-	0.083	12.0	0.0	0.21	10.6	0.0	1.6	2	0	0	2	2	2	0	DREV	methyltransferase
UPF0020	PF01170.18	gi|336251850|ref|YP_004585818.1|	-	0.11	12.2	0.0	0.19	11.4	0.0	1.5	1	1	0	1	1	1	0	Putative	RNA	methylase	family	UPF0020
tRNA_U5-meth_tr	PF05958.11	gi|336251850|ref|YP_004585818.1|	-	0.11	11.4	0.0	0.15	11.0	0.0	1.1	1	0	0	1	1	1	0	tRNA	(Uracil-5-)-methyltransferase
RrnaAD	PF00398.20	gi|336251850|ref|YP_004585818.1|	-	0.19	10.8	0.0	0.27	10.3	0.0	1.2	1	0	0	1	1	1	0	Ribosomal	RNA	adenine	dimethylase
Pyr_redox_2	PF07992.14	gi|336251851|ref|YP_004585819.1|	-	2.4e-21	76.2	0.0	1.2e-19	70.7	0.0	2.1	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
DAO	PF01266.24	gi|336251851|ref|YP_004585819.1|	-	4.5e-09	36.4	2.0	2.6e-05	24.0	0.3	2.4	1	1	1	2	2	2	2	FAD	dependent	oxidoreductase
HI0933_like	PF03486.14	gi|336251851|ref|YP_004585819.1|	-	2.3e-08	33.2	0.0	7.1e-05	21.7	0.0	2.3	2	0	0	2	2	2	2	HI0933-like	protein
Lycopene_cycl	PF05834.12	gi|336251851|ref|YP_004585819.1|	-	3.7e-08	32.8	0.3	0.0078	15.3	0.0	2.7	2	1	0	3	3	3	2	Lycopene	cyclase	protein
FAD_binding_2	PF00890.24	gi|336251851|ref|YP_004585819.1|	-	1.1e-07	31.4	0.2	8.4e-07	28.4	0.1	2.3	2	1	0	3	3	3	1	FAD	binding	domain
NAD_binding_9	PF13454.6	gi|336251851|ref|YP_004585819.1|	-	8.6e-07	29.1	1.2	0.0029	17.6	0.1	2.6	3	0	0	3	3	3	2	FAD-NAD(P)-binding
Pyr_redox_3	PF13738.6	gi|336251851|ref|YP_004585819.1|	-	9.8e-07	28.3	4.0	0.011	15.1	0.1	3.0	3	1	0	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
FAD_binding_3	PF01494.19	gi|336251851|ref|YP_004585819.1|	-	4.8e-05	22.8	0.2	0.00018	20.9	0.0	1.9	2	0	0	2	2	2	1	FAD	binding	domain
FAD_oxidored	PF12831.7	gi|336251851|ref|YP_004585819.1|	-	0.00064	19.2	0.1	0.00094	18.6	0.1	1.2	1	0	0	1	1	1	1	FAD	dependent	oxidoreductase
GIDA	PF01134.22	gi|336251851|ref|YP_004585819.1|	-	0.0009	18.4	3.2	0.027	13.6	0.2	3.1	3	1	1	4	4	4	1	Glucose	inhibited	division	protein	A
Thi4	PF01946.17	gi|336251851|ref|YP_004585819.1|	-	0.0026	17.0	0.0	0.0051	16.1	0.0	1.4	1	0	0	1	1	1	1	Thi4	family
NAD_binding_8	PF13450.6	gi|336251851|ref|YP_004585819.1|	-	0.0034	17.6	0.1	0.0074	16.5	0.1	1.6	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
Trp_halogenase	PF04820.14	gi|336251851|ref|YP_004585819.1|	-	0.019	13.9	3.0	0.3	9.9	0.1	2.6	3	0	0	3	3	3	0	Tryptophan	halogenase
K_oxygenase	PF13434.6	gi|336251851|ref|YP_004585819.1|	-	0.096	11.8	0.1	3.2	6.8	0.0	2.1	2	0	0	2	2	2	0	L-lysine	6-monooxygenase	(NADPH-requiring)
Amino_oxidase	PF01593.24	gi|336251851|ref|YP_004585819.1|	-	0.99	8.6	5.3	1	8.6	0.2	2.7	3	0	0	3	3	3	0	Flavin	containing	amine	oxidoreductase
TrmB	PF01978.19	gi|336251852|ref|YP_004585820.1|	-	1.2e-11	44.3	0.0	1.9e-11	43.7	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_11	PF08279.12	gi|336251852|ref|YP_004585820.1|	-	0.0002	21.2	0.0	0.00046	20.1	0.0	1.6	2	0	0	2	2	2	1	HTH	domain
HTH_IclR	PF09339.10	gi|336251852|ref|YP_004585820.1|	-	0.0003	20.5	0.0	0.00049	19.9	0.0	1.3	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_20	PF12840.7	gi|336251852|ref|YP_004585820.1|	-	0.0013	18.8	0.1	0.004	17.2	0.0	1.7	2	0	0	2	2	2	1	Helix-turn-helix	domain
HTH_24	PF13412.6	gi|336251852|ref|YP_004585820.1|	-	0.017	14.7	0.0	0.03	13.9	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_29	PF13551.6	gi|336251852|ref|YP_004585820.1|	-	0.038	14.0	0.0	0.07	13.2	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn	helix
RuvB_C	PF05491.13	gi|336251852|ref|YP_004585820.1|	-	0.041	13.8	0.0	0.061	13.2	0.0	1.3	1	0	0	1	1	1	0	RuvB	C-terminal	winged	helix	domain
PadR	PF03551.14	gi|336251852|ref|YP_004585820.1|	-	0.053	13.5	0.1	0.13	12.2	0.0	1.7	1	1	1	2	2	2	0	Transcriptional	regulator	PadR-like	family
MarR_2	PF12802.7	gi|336251852|ref|YP_004585820.1|	-	0.056	13.3	0.0	0.14	12.1	0.0	1.6	2	0	0	2	2	2	0	MarR	family
HTH_38	PF13936.6	gi|336251852|ref|YP_004585820.1|	-	0.095	12.5	0.1	0.38	10.6	0.1	1.9	2	0	0	2	2	2	0	Helix-turn-helix	domain
Fe_dep_repress	PF01325.19	gi|336251852|ref|YP_004585820.1|	-	0.14	12.4	0.1	0.27	11.5	0.1	1.5	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_5	PF01022.20	gi|336251852|ref|YP_004585820.1|	-	0.14	12.0	0.0	0.28	11.1	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
Phage_integrase	PF00589.22	gi|336251853|ref|YP_004585821.1|	-	2.1e-09	37.4	0.0	5.9e-09	36.0	0.0	1.7	1	1	0	1	1	1	1	Phage	integrase	family
Phage_int_SAM_5	PF13102.6	gi|336251853|ref|YP_004585821.1|	-	0.00052	20.3	0.0	0.00098	19.4	0.0	1.4	1	0	0	1	1	1	1	Phage	integrase	SAM-like	domain
Phage_int_SAM_1	PF02899.17	gi|336251853|ref|YP_004585821.1|	-	0.17	12.2	1.1	2.6	8.4	0.0	3.1	3	1	1	4	4	4	0	Phage	integrase,	N-terminal	SAM-like	domain
NAD_binding_10	PF13460.6	gi|336251854|ref|YP_004585822.1|	-	1.7e-28	99.7	0.5	2e-28	99.6	0.5	1.0	1	0	0	1	1	1	1	NAD(P)H-binding
Epimerase	PF01370.21	gi|336251854|ref|YP_004585822.1|	-	0.00015	21.4	0.0	0.00018	21.1	0.0	1.2	1	0	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
TrkA_N	PF02254.18	gi|336251854|ref|YP_004585822.1|	-	0.00035	20.8	0.1	0.00058	20.1	0.1	1.4	1	0	0	1	1	1	1	TrkA-N	domain
NmrA	PF05368.13	gi|336251854|ref|YP_004585822.1|	-	0.00072	19.2	0.0	0.00099	18.7	0.0	1.2	1	0	0	1	1	1	1	NmrA-like	family
RmlD_sub_bind	PF04321.17	gi|336251854|ref|YP_004585822.1|	-	0.0031	16.6	0.1	0.0046	16.1	0.1	1.2	1	0	0	1	1	1	1	RmlD	substrate	binding	domain
DFP	PF04127.15	gi|336251854|ref|YP_004585822.1|	-	0.017	15.0	0.1	0.026	14.4	0.1	1.2	1	0	0	1	1	1	0	DNA	/	pantothenate	metabolism	flavoprotein
ApbA	PF02558.16	gi|336251854|ref|YP_004585822.1|	-	0.047	13.3	0.0	0.064	12.9	0.0	1.2	1	0	0	1	1	1	0	Ketopantoate	reductase	PanE/ApbA
KR	PF08659.10	gi|336251854|ref|YP_004585822.1|	-	0.06	13.2	0.1	0.12	12.3	0.1	1.5	1	0	0	1	1	1	0	KR	domain
DapB_N	PF01113.20	gi|336251854|ref|YP_004585822.1|	-	0.061	13.4	0.1	0.098	12.8	0.1	1.4	1	0	0	1	1	1	0	Dihydrodipicolinate	reductase,	N-terminus
adh_short	PF00106.25	gi|336251854|ref|YP_004585822.1|	-	0.075	12.5	0.2	0.14	11.6	0.2	1.4	1	0	0	1	1	1	0	short	chain	dehydrogenase
DZR	PF12773.7	gi|336251856|ref|YP_004585824.1|	-	4e-05	23.6	1.1	6.1e-05	23.0	1.1	1.2	1	0	0	1	1	1	1	Double	zinc	ribbon
zinc_ribbon_2	PF13240.6	gi|336251856|ref|YP_004585824.1|	-	0.00054	19.6	1.1	0.00088	18.9	1.1	1.4	1	0	0	1	1	1	1	zinc-ribbon	domain
zf-ribbon_3	PF13248.6	gi|336251856|ref|YP_004585824.1|	-	0.0014	18.0	1.3	0.0023	17.3	1.3	1.4	1	0	0	1	1	1	1	zinc-ribbon	domain
zinc_ribbon_15	PF17032.5	gi|336251856|ref|YP_004585824.1|	-	0.024	15.4	0.1	0.033	14.9	0.1	1.2	1	0	0	1	1	1	0	zinc-ribbon	family
Nudix_N_2	PF14803.6	gi|336251856|ref|YP_004585824.1|	-	0.026	14.4	0.5	3.1	7.8	0.1	2.3	2	0	0	2	2	2	0	Nudix	N-terminal
TM2	PF05154.16	gi|336251856|ref|YP_004585824.1|	-	0.04	14.2	0.2	0.089	13.1	0.2	1.5	1	0	0	1	1	1	0	TM2	domain
zinc-ribbons_6	PF07191.12	gi|336251856|ref|YP_004585824.1|	-	0.051	13.6	0.4	0.073	13.1	0.4	1.2	1	0	0	1	1	1	0	zinc-ribbons
zinc_ribbon_9	PF14369.6	gi|336251856|ref|YP_004585824.1|	-	0.26	11.6	5.1	0.55	10.5	0.2	2.3	2	0	0	2	2	2	0	zinc-ribbon
Rad50_zn_hook	PF04423.14	gi|336251856|ref|YP_004585824.1|	-	1.6	8.6	3.5	0.72	9.7	0.2	1.9	2	0	0	2	2	2	0	Rad50	zinc	hook	motif
TetR_C_6	PF13977.6	gi|336251857|ref|YP_004585825.1|	-	3.1e-11	43.5	1.3	5.7e-11	42.6	0.8	1.6	1	1	1	2	2	2	1	BetI-type	transcriptional	repressor,	C-terminal
TetR_N	PF00440.23	gi|336251857|ref|YP_004585825.1|	-	1.1e-08	34.7	0.0	2.4e-08	33.6	0.0	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	tetR	family
TetR_C_31	PF17940.1	gi|336251857|ref|YP_004585825.1|	-	1.9e-05	24.8	0.6	3.9e-05	23.8	0.6	1.4	1	0	0	1	1	1	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_27	PF17935.1	gi|336251857|ref|YP_004585825.1|	-	0.00012	22.0	0.3	0.00033	20.7	0.1	1.9	2	0	0	2	2	2	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_24	PF17932.1	gi|336251857|ref|YP_004585825.1|	-	0.0014	18.9	0.1	0.0029	17.9	0.1	1.5	1	0	0	1	1	1	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_29	PF17938.1	gi|336251857|ref|YP_004585825.1|	-	0.03	14.4	0.0	0.046	13.8	0.0	1.3	1	0	0	1	1	1	0	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_17	PF17922.1	gi|336251857|ref|YP_004585825.1|	-	0.045	13.9	0.2	0.16	12.1	0.1	1.9	1	1	1	2	2	2	0	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_37	PF18665.1	gi|336251857|ref|YP_004585825.1|	-	0.046	14.3	0.0	0.085	13.5	0.0	1.4	1	0	0	1	1	1	0	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_7	PF14246.6	gi|336251857|ref|YP_004585825.1|	-	0.062	13.3	0.3	0.13	12.3	0.3	1.5	1	0	0	1	1	1	0	AefR-like	transcriptional	repressor,	C-terminal	domain
TetR_C_25	PF17933.1	gi|336251857|ref|YP_004585825.1|	-	0.063	13.6	0.2	0.2	12.0	0.1	2.0	2	1	1	3	3	3	0	Tetracyclin	repressor-like,	C-terminal	domain
ABC_tran	PF00005.27	gi|336251858|ref|YP_004585826.1|	-	2.1e-33	115.8	0.0	3.2e-33	115.2	0.0	1.3	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|336251858|ref|YP_004585826.1|	-	2.6e-09	37.3	0.5	0.00027	20.9	0.0	2.2	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_29	PF13555.6	gi|336251858|ref|YP_004585826.1|	-	4.1e-05	23.2	0.0	7.5e-05	22.4	0.0	1.4	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
DUF4162	PF13732.6	gi|336251858|ref|YP_004585826.1|	-	9.7e-05	23.0	0.0	0.0002	22.0	0.0	1.6	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4162)
RsgA_GTPase	PF03193.16	gi|336251858|ref|YP_004585826.1|	-	0.0005	20.0	0.0	0.00087	19.2	0.0	1.3	1	0	0	1	1	1	1	RsgA	GTPase
AAA_23	PF13476.6	gi|336251858|ref|YP_004585826.1|	-	0.0006	20.4	0.0	0.0009	19.8	0.0	1.3	1	0	0	1	1	1	1	AAA	domain
MMR_HSR1	PF01926.23	gi|336251858|ref|YP_004585826.1|	-	0.013	15.6	0.7	0.046	13.8	0.5	2.3	1	1	1	2	2	2	0	50S	ribosome-binding	GTPase
AAA_16	PF13191.6	gi|336251858|ref|YP_004585826.1|	-	0.017	15.5	0.1	0.042	14.2	0.0	1.7	2	1	0	2	2	2	0	AAA	ATPase	domain
AAA_22	PF13401.6	gi|336251858|ref|YP_004585826.1|	-	0.027	14.7	0.0	0.17	12.1	0.0	2.2	1	1	0	1	1	1	0	AAA	domain
SMC_N	PF02463.19	gi|336251858|ref|YP_004585826.1|	-	0.03	13.7	0.0	1.4	8.3	0.0	2.2	2	0	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
AAA_27	PF13514.6	gi|336251858|ref|YP_004585826.1|	-	0.034	13.7	0.0	0.1	12.2	0.0	1.7	2	0	0	2	2	2	0	AAA	domain
DUF5428	PF17493.2	gi|336251858|ref|YP_004585826.1|	-	0.077	13.4	0.0	0.2	12.1	0.0	1.7	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5428)
Sucrose_synth	PF00862.19	gi|336251858|ref|YP_004585826.1|	-	0.083	11.2	0.0	0.12	10.7	0.0	1.1	1	0	0	1	1	1	0	Sucrose	synthase
AAA_15	PF13175.6	gi|336251858|ref|YP_004585826.1|	-	0.097	12.4	0.0	0.52	10.0	0.0	1.8	2	0	0	2	2	2	0	AAA	ATPase	domain
AAA_33	PF13671.6	gi|336251858|ref|YP_004585826.1|	-	0.099	12.8	0.0	0.31	11.2	0.0	1.9	2	0	0	2	2	2	0	AAA	domain
Mg_chelatase	PF01078.21	gi|336251858|ref|YP_004585826.1|	-	0.13	11.6	0.0	0.23	10.8	0.0	1.4	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
ABC2_membrane	PF01061.24	gi|336251859|ref|YP_004585827.1|	-	3.8e-38	131.0	15.6	5e-38	130.6	15.6	1.2	1	0	0	1	1	1	1	ABC-2	type	transporter
ABC2_membrane_3	PF12698.7	gi|336251859|ref|YP_004585827.1|	-	1.9e-17	63.4	20.7	1.9e-17	63.4	20.7	1.8	1	1	1	2	2	2	1	ABC-2	family	transporter	protein
ABC2_membrane_2	PF12679.7	gi|336251859|ref|YP_004585827.1|	-	2.3e-08	33.7	21.8	4.4e-08	32.8	21.8	1.5	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
YobH	PF13996.6	gi|336251859|ref|YP_004585827.1|	-	0.084	12.9	1.5	0.3	11.2	0.3	2.4	2	0	0	2	2	2	0	YobH-like	protein
OmdA	PF13376.6	gi|336251860|ref|YP_004585828.1|	-	2e-19	69.3	2.9	5.2e-19	68.0	2.9	1.8	1	0	0	1	1	1	1	Bacteriocin-protection,	YdeI	or	OmpD-Associated
CBS	PF00571.28	gi|336251861|ref|YP_004585829.1|	-	3.1e-24	85.2	2.0	1.4e-12	47.8	0.1	2.5	2	0	0	2	2	2	2	CBS	domain
Peptidase_M50	PF02163.22	gi|336251861|ref|YP_004585829.1|	-	3.1e-13	49.6	10.5	2.6e-08	33.4	0.2	2.6	1	1	1	2	2	2	2	Peptidase	family	M50
Peptidase_M50B	PF13398.6	gi|336251861|ref|YP_004585829.1|	-	0.0032	17.2	9.2	0.013	15.2	9.2	2.0	1	1	0	1	1	1	1	Peptidase	M50B-like
Abhydrolase_3	PF07859.13	gi|336251862|ref|YP_004585830.1|	-	1e-70	237.9	0.5	1.2e-70	237.6	0.5	1.1	1	0	0	1	1	1	1	alpha/beta	hydrolase	fold
COesterase	PF00135.28	gi|336251862|ref|YP_004585830.1|	-	4.5e-09	35.7	0.2	1.5e-08	34.0	0.2	1.6	1	1	0	1	1	1	1	Carboxylesterase	family
Peptidase_S15	PF02129.18	gi|336251862|ref|YP_004585830.1|	-	7.3e-05	22.5	0.0	0.0026	17.4	0.0	2.3	2	0	0	2	2	2	1	X-Pro	dipeptidyl-peptidase	(S15	family)
Peptidase_S9	PF00326.21	gi|336251862|ref|YP_004585830.1|	-	0.0006	19.4	0.1	0.0013	18.2	0.1	1.5	1	1	0	1	1	1	1	Prolyl	oligopeptidase	family
Abhydrolase_6	PF12697.7	gi|336251862|ref|YP_004585830.1|	-	0.0024	18.5	4.8	0.0035	18.0	4.8	1.2	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
AXE1	PF05448.12	gi|336251862|ref|YP_004585830.1|	-	0.0065	15.2	0.1	0.63	8.7	0.1	2.1	2	0	0	2	2	2	2	Acetyl	xylan	esterase	(AXE1)
Say1_Mug180	PF10340.9	gi|336251862|ref|YP_004585830.1|	-	0.027	13.3	0.0	0.056	12.3	0.0	1.4	1	1	0	1	1	1	0	Steryl	acetyl	hydrolase
Chlorophyllase2	PF12740.7	gi|336251862|ref|YP_004585830.1|	-	0.029	13.3	0.0	0.068	12.1	0.0	1.5	1	1	0	1	1	1	0	Chlorophyllase	enzyme
Chlorophyllase	PF07224.11	gi|336251862|ref|YP_004585830.1|	-	0.15	11.1	0.0	0.23	10.4	0.0	1.2	1	0	0	1	1	1	0	Chlorophyllase
Lipase_3	PF01764.25	gi|336251862|ref|YP_004585830.1|	-	0.17	11.7	0.0	0.27	11.1	0.0	1.3	1	0	0	1	1	1	0	Lipase	(class	3)
NosL	PF05573.12	gi|336251863|ref|YP_004585831.1|	-	0.042	14.2	0.0	0.051	13.9	0.0	1.3	1	0	0	1	1	1	0	NosL
HTH_10	PF04967.12	gi|336251864|ref|YP_004585832.1|	-	1.2e-14	53.8	0.2	3.6e-14	52.3	0.0	1.8	2	0	0	2	2	2	1	HTH	DNA	binding	domain
HTH_30	PF13556.6	gi|336251864|ref|YP_004585832.1|	-	0.00015	21.5	0.0	0.00038	20.2	0.0	1.6	1	0	0	1	1	1	1	PucR	C-terminal	helix-turn-helix	domain
MarR_2	PF12802.7	gi|336251864|ref|YP_004585832.1|	-	0.00017	21.4	0.1	0.0007	19.4	0.0	2.1	2	0	0	2	2	2	1	MarR	family
HTH_8	PF02954.19	gi|336251864|ref|YP_004585832.1|	-	0.037	13.8	0.0	0.096	12.5	0.0	1.7	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	Fis	family
HTH_24	PF13412.6	gi|336251864|ref|YP_004585832.1|	-	0.038	13.6	0.0	0.066	12.8	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_5	PF01022.20	gi|336251864|ref|YP_004585832.1|	-	0.11	12.4	0.0	0.22	11.4	0.0	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_psq	PF05225.16	gi|336251864|ref|YP_004585832.1|	-	0.57	10.0	0.0	0.57	10.0	0.0	2.1	3	0	0	3	3	3	0	helix-turn-helix,	Psq	domain
LUD_dom	PF02589.15	gi|336251865|ref|YP_004585833.1|	-	4.9e-40	137.3	0.1	6e-40	137.0	0.1	1.1	1	0	0	1	1	1	1	LUD	domain
UPF0180	PF03698.13	gi|336251865|ref|YP_004585833.1|	-	0.029	14.5	0.1	0.067	13.4	0.1	1.6	1	0	0	1	1	1	0	Uncharacterised	protein	family	(UPF0180)
YcaO	PF02624.16	gi|336251865|ref|YP_004585833.1|	-	0.039	13.2	0.0	0.056	12.7	0.0	1.2	1	0	0	1	1	1	0	YcaO	cyclodehydratase,	ATP-ad	Mg2+-binding
CHASE2	PF05226.11	gi|336251865|ref|YP_004585833.1|	-	0.11	12.2	0.1	0.11	12.1	0.1	1.2	1	0	0	1	1	1	0	CHASE2	domain
E1-E2_ATPase	PF00122.20	gi|336251867|ref|YP_004585835.1|	-	2.4e-55	186.9	0.3	2.4e-55	186.9	0.3	1.7	2	0	0	2	2	2	1	E1-E2	ATPase
Hydrolase	PF00702.26	gi|336251867|ref|YP_004585835.1|	-	3.1e-40	138.7	3.0	7.1e-40	137.5	3.0	1.7	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
HMA	PF00403.26	gi|336251867|ref|YP_004585835.1|	-	2.4e-17	63.1	0.4	1.2e-16	60.9	0.0	2.4	3	0	0	3	3	3	1	Heavy-metal-associated	domain
HAD	PF12710.7	gi|336251867|ref|YP_004585835.1|	-	0.00053	20.4	0.2	0.0017	18.8	0.2	1.9	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_3	PF08282.12	gi|336251867|ref|YP_004585835.1|	-	0.0052	16.6	0.4	0.028	14.1	0.5	1.9	2	0	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
EccE	PF11203.8	gi|336251867|ref|YP_004585835.1|	-	0.072	13.4	1.1	1.1	9.6	0.0	2.9	2	0	0	2	2	2	0	Putative	type	VII	ESX	secretion	system	translocon,	EccE
MCPsignal	PF00015.21	gi|336251868|ref|YP_004585836.1|	-	3e-50	170.4	52.0	6.5e-46	156.3	24.5	3.7	2	1	2	4	4	3	3	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
Protoglobin	PF11563.8	gi|336251868|ref|YP_004585836.1|	-	5.2e-38	130.4	0.5	2.3e-37	128.3	0.5	2.2	1	1	0	1	1	1	1	Protoglobin
DUF948	PF06103.11	gi|336251868|ref|YP_004585836.1|	-	2.3e-07	30.9	41.4	0.00047	20.4	3.4	5.8	4	3	2	6	6	5	3	Bacterial	protein	of	unknown	function	(DUF948)
Sec8_exocyst	PF04048.14	gi|336251868|ref|YP_004585836.1|	-	8.4e-06	25.7	14.0	0.0017	18.3	0.0	4.1	3	1	1	4	4	4	2	Sec8	exocyst	complex	component	specific	domain
Syntaxin-6_N	PF09177.11	gi|336251868|ref|YP_004585836.1|	-	0.00025	21.5	32.1	0.0024	18.4	3.4	5.5	3	2	2	5	5	5	1	Syntaxin	6,	N-terminal
Laminin_II	PF06009.12	gi|336251868|ref|YP_004585836.1|	-	0.00095	19.2	40.1	0.0015	18.5	2.6	5.6	3	2	3	6	6	6	2	Laminin	Domain	II
DUF1664	PF07889.12	gi|336251868|ref|YP_004585836.1|	-	0.0032	17.5	32.5	0.051	13.6	6.5	5.1	2	1	4	6	6	6	3	Protein	of	unknown	function	(DUF1664)
BLOC1_2	PF10046.9	gi|336251868|ref|YP_004585836.1|	-	0.0039	17.5	34.9	0.16	12.3	0.8	6.1	4	2	1	5	5	5	2	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
Bac_globin	PF01152.21	gi|336251868|ref|YP_004585836.1|	-	0.005	17.0	0.4	0.03	14.5	0.0	2.6	2	0	0	2	2	2	1	Bacterial-like	globin
CorA	PF01544.18	gi|336251868|ref|YP_004585836.1|	-	0.0071	15.7	6.2	0.0071	15.7	6.2	4.2	2	1	1	4	4	4	1	CorA-like	Mg2+	transporter	protein
Fzo_mitofusin	PF04799.13	gi|336251868|ref|YP_004585836.1|	-	0.0074	15.9	26.3	0.0094	15.5	1.1	5.0	3	2	2	5	5	5	1	fzo-like	conserved	region
FAM184	PF15665.5	gi|336251868|ref|YP_004585836.1|	-	0.01	15.6	4.5	0.01	15.6	4.5	4.2	2	1	1	4	4	4	0	Family	with	sequence	similarity	184,	A	and	B
Fib_alpha	PF08702.10	gi|336251868|ref|YP_004585836.1|	-	0.015	15.5	22.8	0.75	10.0	3.9	4.7	3	2	2	5	5	5	0	Fibrinogen	alpha/beta	chain	family
PMC2NT	PF08066.12	gi|336251868|ref|YP_004585836.1|	-	0.029	15.0	3.9	0.029	15.0	3.9	4.5	2	2	2	4	4	4	0	PMC2NT	(NUC016)	domain
DASH_Dad2	PF08654.10	gi|336251868|ref|YP_004585836.1|	-	0.031	14.7	2.7	0.031	14.7	2.7	4.7	2	1	3	5	5	4	0	DASH	complex	subunit	Dad2
DUF2935	PF11155.8	gi|336251868|ref|YP_004585836.1|	-	0.033	14.5	3.4	0.78	10.1	0.0	3.5	3	2	0	3	3	3	0	Domain	of	unknown	function	(DUF2935)
GLE1	PF07817.13	gi|336251868|ref|YP_004585836.1|	-	0.1	11.8	4.6	0.53	9.4	0.2	3.0	3	0	0	3	3	3	0	GLE1-like	protein
Baculo_PEP_C	PF04513.12	gi|336251868|ref|YP_004585836.1|	-	0.11	12.5	29.7	0.057	13.5	1.9	4.9	3	2	2	5	5	5	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
DASH_Dam1	PF08653.10	gi|336251868|ref|YP_004585836.1|	-	0.13	12.0	6.3	6.8	6.6	0.0	4.8	5	0	0	5	5	5	0	DASH	complex	subunit	Dam1
ATG16	PF08614.11	gi|336251868|ref|YP_004585836.1|	-	0.19	11.9	42.5	0.077	13.2	11.1	3.4	3	1	1	4	4	3	0	Autophagy	protein	16	(ATG16)
CK2S	PF15011.6	gi|336251868|ref|YP_004585836.1|	-	0.2	11.5	17.2	3.7	7.4	0.1	4.7	3	2	3	6	6	6	0	Casein	Kinase	2	substrate
NPV_P10	PF05531.12	gi|336251868|ref|YP_004585836.1|	-	0.32	11.5	35.6	16	6.1	1.3	7.0	5	2	2	7	7	6	0	Nucleopolyhedrovirus	P10	protein
HOOK	PF05622.12	gi|336251868|ref|YP_004585836.1|	-	0.36	8.9	30.1	0.31	9.1	11.3	2.3	1	1	1	2	2	2	0	HOOK	protein
Sec5	PF15469.6	gi|336251868|ref|YP_004585836.1|	-	0.39	10.5	10.2	0.16	11.8	3.1	3.3	2	1	2	4	4	4	0	Exocyst	complex	component	Sec5
Med30	PF11315.8	gi|336251868|ref|YP_004585836.1|	-	0.44	10.8	16.5	0.43	10.8	2.9	3.7	3	1	1	4	4	4	0	Mediator	complex	subunit	30
Spc7	PF08317.11	gi|336251868|ref|YP_004585836.1|	-	0.47	9.3	37.0	0.068	12.0	9.7	3.1	2	1	2	4	4	4	0	Spc7	kinetochore	protein
LOH1CR12	PF10158.9	gi|336251868|ref|YP_004585836.1|	-	1.1	9.2	15.1	6	6.9	1.7	4.6	1	1	4	5	5	5	0	Tumour	suppressor	protein
USP8_interact	PF08941.10	gi|336251868|ref|YP_004585836.1|	-	1.3	8.8	8.4	0.5	10.2	0.3	3.1	2	2	1	3	3	3	0	USP8	interacting
Syntaxin_2	PF14523.6	gi|336251868|ref|YP_004585836.1|	-	2.2	8.7	14.7	1.1	9.6	0.2	4.7	2	1	3	5	5	5	0	Syntaxin-like	protein
Mod_r	PF07200.13	gi|336251868|ref|YP_004585836.1|	-	2.5	8.2	32.0	0.45	10.6	1.7	4.6	2	1	2	4	4	4	0	Modifier	of	rudimentary	(Mod(r))	protein
Prominin	PF05478.11	gi|336251868|ref|YP_004585836.1|	-	3.3	5.5	19.9	3.6	5.4	8.2	3.3	2	1	2	4	4	4	0	Prominin
FlgN	PF05130.12	gi|336251868|ref|YP_004585836.1|	-	4.1	7.9	32.5	2.8	8.4	5.0	4.9	2	1	3	5	5	5	0	FlgN	protein
DUF725	PF05267.12	gi|336251868|ref|YP_004585836.1|	-	4.6	7.3	20.4	0.32	11.0	4.0	3.7	3	2	1	4	4	3	0	Protein	of	unknown	function	(DUF725)
AIP3	PF03915.13	gi|336251868|ref|YP_004585836.1|	-	4.8	6.2	30.4	8.1	5.4	8.2	2.7	1	1	1	2	2	2	0	Actin	interacting	protein	3
Sec34	PF04136.15	gi|336251868|ref|YP_004585836.1|	-	5.8	6.8	26.0	0.31	10.9	0.8	5.6	3	2	3	7	7	7	0	Sec34-like	family
TMP_2	PF06791.13	gi|336251868|ref|YP_004585836.1|	-	7	6.3	27.0	0.66	9.6	6.0	3.1	1	1	0	2	2	2	0	Prophage	tail	length	tape	measure	protein
QWRF	PF04484.12	gi|336251868|ref|YP_004585836.1|	-	7.6	6.2	17.5	5.7	6.6	1.0	3.4	2	1	1	3	3	3	0	QWRF	family
DASH_Duo1	PF08651.10	gi|336251868|ref|YP_004585836.1|	-	8.2	6.3	12.3	18	5.2	0.8	5.1	4	1	1	5	5	5	0	DASH	complex	subunit	Duo1
MAD	PF05557.13	gi|336251868|ref|YP_004585836.1|	-	9.8	4.4	29.9	6.7	4.9	12.0	2.3	1	1	0	2	2	2	0	Mitotic	checkpoint	protein
DUF4234	PF14018.6	gi|336251869|ref|YP_004585837.1|	-	0.077	13.1	0.1	0.081	13.1	0.1	1.1	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4234)
Usp	PF00582.26	gi|336251870|ref|YP_004585838.1|	-	1.8e-32	112.8	1.5	2e-32	112.6	1.5	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
GHL6	PF14871.6	gi|336251870|ref|YP_004585838.1|	-	0.043	14.0	0.1	0.056	13.6	0.1	1.2	1	0	0	1	1	1	0	Hypothetical	glycosyl	hydrolase	6
GAF_2	PF13185.6	gi|336251870|ref|YP_004585838.1|	-	0.074	13.3	1.4	0.94	9.8	1.4	2.1	1	1	0	1	1	1	0	GAF	domain
CobU	PF02283.16	gi|336251870|ref|YP_004585838.1|	-	0.088	12.4	0.0	0.14	11.7	0.0	1.4	1	1	0	1	1	1	0	Cobinamide	kinase	/	cobinamide	phosphate	guanyltransferase
Dodecin	PF07311.12	gi|336251870|ref|YP_004585838.1|	-	0.099	12.9	0.4	1.1	9.6	0.0	2.2	2	1	0	2	2	2	0	Dodecin
GHL10	PF02638.15	gi|336251870|ref|YP_004585838.1|	-	0.18	10.9	0.0	0.19	10.8	0.0	1.1	1	0	0	1	1	1	0	Glycosyl	hydrolase-like	10
HMA	PF00403.26	gi|336251871|ref|YP_004585839.1|	-	1.3e-18	67.2	0.5	1.4e-18	67.1	0.5	1.0	1	0	0	1	1	1	1	Heavy-metal-associated	domain
HHH	PF00633.23	gi|336251871|ref|YP_004585839.1|	-	0.09	12.7	0.1	0.24	11.3	0.1	1.8	1	0	0	1	1	1	0	Helix-hairpin-helix	motif
HTH_AsnC-type	PF13404.6	gi|336251872|ref|YP_004585840.1|	-	3.2e-16	58.9	0.5	7e-16	57.8	0.0	1.8	2	0	0	2	2	2	1	AsnC-type	helix-turn-helix	domain
HTH_24	PF13412.6	gi|336251872|ref|YP_004585840.1|	-	2.4e-14	52.6	0.0	4.1e-14	51.9	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_20	PF12840.7	gi|336251872|ref|YP_004585840.1|	-	3.1e-06	27.1	0.0	6e-06	26.2	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
MarR_2	PF12802.7	gi|336251872|ref|YP_004585840.1|	-	7.9e-06	25.7	0.0	1.2e-05	25.1	0.0	1.4	1	0	0	1	1	1	1	MarR	family
YHS	PF04945.13	gi|336251872|ref|YP_004585840.1|	-	4e-05	23.6	0.7	6.4e-05	23.0	0.7	1.3	1	0	0	1	1	1	1	YHS	domain
Arc_trans_TRASH	PF08394.10	gi|336251872|ref|YP_004585840.1|	-	5.6e-05	23.4	2.0	8e-05	22.9	2.0	1.2	1	0	0	1	1	1	1	Archaeal	TRASH	domain
HTH_5	PF01022.20	gi|336251872|ref|YP_004585840.1|	-	5.6e-05	22.9	0.0	8.6e-05	22.3	0.0	1.3	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR	PF01047.22	gi|336251872|ref|YP_004585840.1|	-	0.00035	20.4	0.0	0.00076	19.4	0.0	1.6	2	0	0	2	2	2	1	MarR	family
HTH_IclR	PF09339.10	gi|336251872|ref|YP_004585840.1|	-	0.0018	18.0	0.0	0.0035	17.1	0.0	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
LIM	PF00412.22	gi|336251872|ref|YP_004585840.1|	-	0.0024	18.1	0.9	0.004	17.3	0.9	1.3	1	0	0	1	1	1	1	LIM	domain
TrmB	PF01978.19	gi|336251872|ref|YP_004585840.1|	-	0.0027	17.6	0.0	0.0046	16.8	0.0	1.3	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
Sigma70_r4	PF04545.16	gi|336251872|ref|YP_004585840.1|	-	0.019	14.4	0.1	0.035	13.6	0.1	1.4	1	0	0	1	1	1	0	Sigma-70,	region	4
zf-FCS	PF06467.14	gi|336251872|ref|YP_004585840.1|	-	0.02	14.8	3.1	0.037	14.0	3.1	1.5	1	0	0	1	1	1	0	MYM-type	Zinc	finger	with	FCS	sequence	motif
Ta0938	PF11494.8	gi|336251872|ref|YP_004585840.1|	-	0.039	14.2	0.5	0.084	13.2	0.5	1.5	1	0	0	1	1	1	0	Ta0938
ATPase-cat_bd	PF12156.8	gi|336251872|ref|YP_004585840.1|	-	0.085	13.6	2.5	0.16	12.8	2.5	1.4	1	0	0	1	1	1	0	Putative	metal-binding	domain	of	cation	transport	ATPase
HTH_34	PF13601.6	gi|336251872|ref|YP_004585840.1|	-	0.093	12.9	0.0	0.16	12.2	0.0	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
E1-E2_ATPase	PF00122.20	gi|336251873|ref|YP_004585841.1|	-	2.2e-49	167.4	0.8	5e-49	166.3	0.8	1.6	1	0	0	1	1	1	1	E1-E2	ATPase
Hydrolase	PF00702.26	gi|336251873|ref|YP_004585841.1|	-	6.2e-47	160.6	7.2	7.8e-47	160.3	5.9	1.9	2	0	0	2	2	2	1	haloacid	dehalogenase-like	hydrolase
HMA	PF00403.26	gi|336251873|ref|YP_004585841.1|	-	7.3e-28	96.8	0.0	1.5e-12	47.8	0.0	3.1	2	0	0	2	2	2	2	Heavy-metal-associated	domain
Hydrolase_3	PF08282.12	gi|336251873|ref|YP_004585841.1|	-	5.9e-06	26.2	0.2	0.0076	16.0	0.7	2.9	3	0	0	3	3	3	2	haloacid	dehalogenase-like	hydrolase
HAD	PF12710.7	gi|336251873|ref|YP_004585841.1|	-	0.00014	22.4	0.2	0.00041	20.8	0.2	1.8	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_6	PF13344.6	gi|336251873|ref|YP_004585841.1|	-	0.0026	17.9	1.3	0.027	14.6	0.0	3.3	5	0	0	5	5	5	1	Haloacid	dehalogenase-like	hydrolase
Usp	PF00582.26	gi|336251874|ref|YP_004585842.1|	-	8e-14	52.3	0.1	1e-13	52.0	0.1	1.1	1	0	0	1	1	1	1	Universal	stress	protein	family
AIRS	PF00586.24	gi|336251874|ref|YP_004585842.1|	-	0.082	13.6	0.0	0.15	12.8	0.0	1.5	1	1	0	1	1	1	0	AIR	synthase	related	protein,	N-terminal	domain
Tautomerase	PF01361.21	gi|336251874|ref|YP_004585842.1|	-	8.9	6.3	6.2	79	3.3	0.1	3.2	2	1	1	3	3	3	0	Tautomerase	enzyme
Shikimate_dh_N	PF08501.11	gi|336251875|ref|YP_004585843.1|	-	1.6e-25	89.1	0.0	4e-25	87.9	0.0	1.7	2	0	0	2	2	2	1	Shikimate	dehydrogenase	substrate	binding	domain
SDH_C	PF18317.1	gi|336251875|ref|YP_004585843.1|	-	8.7e-12	44.6	0.7	2.7e-11	43.0	0.7	1.9	1	0	0	1	1	1	1	Shikimate	5'-dehydrogenase	C-terminal	domain
Shikimate_DH	PF01488.20	gi|336251875|ref|YP_004585843.1|	-	1.1e-10	41.7	0.0	1.7e-10	41.1	0.0	1.2	1	0	0	1	1	1	1	Shikimate	/	quinate	5-dehydrogenase
2-Hacid_dh_C	PF02826.19	gi|336251875|ref|YP_004585843.1|	-	0.001	18.4	0.0	0.0017	17.7	0.0	1.3	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
F420_oxidored	PF03807.17	gi|336251875|ref|YP_004585843.1|	-	0.0015	19.0	0.1	0.0032	18.0	0.1	1.5	1	0	0	1	1	1	1	NADP	oxidoreductase	coenzyme	F420-dependent
NAD_binding_7	PF13241.6	gi|336251875|ref|YP_004585843.1|	-	0.0075	16.7	0.0	0.011	16.1	0.0	1.3	1	0	0	1	1	1	1	Putative	NAD(P)-binding
IlvN	PF07991.12	gi|336251875|ref|YP_004585843.1|	-	0.015	14.9	0.1	0.023	14.3	0.1	1.3	1	0	0	1	1	1	0	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
adh_short	PF00106.25	gi|336251875|ref|YP_004585843.1|	-	0.019	14.4	0.3	0.033	13.7	0.3	1.4	1	0	0	1	1	1	0	short	chain	dehydrogenase
THF_DHG_CYH_C	PF02882.19	gi|336251875|ref|YP_004585843.1|	-	0.069	12.5	0.0	0.12	11.7	0.0	1.4	1	0	0	1	1	1	0	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
Pyr_redox_3	PF13738.6	gi|336251875|ref|YP_004585843.1|	-	0.17	11.1	0.0	0.23	10.7	0.0	1.1	1	0	0	1	1	1	0	Pyridine	nucleotide-disulphide	oxidoreductase
IncF	PF17626.2	gi|336251876|ref|YP_004585844.1|	-	0.051	13.9	3.1	0.059	13.7	3.1	1.0	1	0	0	1	1	1	0	Inclusion	membrane	protein	F
DUF2207	PF09972.9	gi|336251876|ref|YP_004585844.1|	-	2.2	6.9	5.2	2.2	6.9	5.2	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
DUF4175	PF13779.6	gi|336251876|ref|YP_004585844.1|	-	5	4.9	5.4	4.9	4.9	5.4	1.0	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4175)
SPT_ssu-like	PF11779.8	gi|336251876|ref|YP_004585844.1|	-	6.8	6.4	8.4	4.3e+02	0.6	8.4	2.1	1	1	0	1	1	1	0	Small	subunit	of	serine	palmitoyltransferase-like
Glyco_hydro_88	PF07470.13	gi|336251877|ref|YP_004585845.1|	-	3.4e-56	190.8	0.0	5e-56	190.2	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	Hydrolase	Family	88
C5-epim_C	PF06662.13	gi|336251877|ref|YP_004585845.1|	-	0.03	13.8	0.0	0.26	10.8	0.0	2.3	3	0	0	3	3	3	0	D-glucuronyl	C5-epimerase	C-terminus
SQHop_cyclase_C	PF13243.6	gi|336251877|ref|YP_004585845.1|	-	0.043	12.9	0.0	0.55	9.3	0.0	1.9	1	1	1	2	2	2	0	Squalene-hopene	cyclase	C-terminal	domain
UxuA	PF03786.13	gi|336251878|ref|YP_004585846.1|	-	8e-45	153.2	0.0	2.5e-37	128.5	0.1	2.0	1	1	1	2	2	2	2	D-mannonate	dehydratase	(UxuA)
AP_endonuc_2	PF01261.24	gi|336251878|ref|YP_004585846.1|	-	7.6e-12	45.1	0.0	1.6e-11	44.1	0.0	1.6	1	1	0	1	1	1	1	Xylose	isomerase-like	TIM	barrel
Aft1_OSA	PF11785.8	gi|336251879|ref|YP_004585847.1|	-	1.9	9.0	3.9	13	6.3	0.4	2.2	2	0	0	2	2	2	0	Aft1	osmotic	stress	response	(OSM)	domain
Glyco_hydro_115	PF15979.5	gi|336251880|ref|YP_004585848.1|	-	7.2e-135	449.8	0.0	9.1e-135	449.5	0.0	1.1	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	115
GH115_C	PF17829.1	gi|336251880|ref|YP_004585848.1|	-	6e-38	130.4	0.0	1e-37	129.6	0.0	1.4	1	0	0	1	1	1	1	Gylcosyl	hydrolase	family	115	C-terminal	domain
Glyco_hydro_67N	PF03648.14	gi|336251880|ref|YP_004585848.1|	-	0.029	14.6	0.0	0.081	13.2	0.0	1.7	1	1	0	1	1	1	0	Glycosyl	hydrolase	family	67	N-terminus
SBP_bac_5	PF00496.22	gi|336251882|ref|YP_004585850.1|	-	2.1e-35	122.4	7.6	4.9e-35	121.2	3.9	2.2	2	0	0	2	2	2	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
TAT_signal	PF10518.9	gi|336251882|ref|YP_004585850.1|	-	0.015	15.1	2.2	0.027	14.3	2.2	1.4	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
SCO1-SenC	PF02630.14	gi|336251882|ref|YP_004585850.1|	-	0.087	12.7	0.1	0.23	11.3	0.1	1.7	1	0	0	1	1	1	0	SCO1/SenC
BPD_transp_1	PF00528.22	gi|336251883|ref|YP_004585851.1|	-	9.1e-33	113.5	13.5	9.1e-33	113.5	13.5	1.9	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
DUF996	PF06195.13	gi|336251883|ref|YP_004585851.1|	-	3.7	7.9	14.2	3.3	8.0	4.3	2.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF996)
BPD_transp_1	PF00528.22	gi|336251884|ref|YP_004585852.1|	-	1.8e-24	86.5	16.9	1.8e-24	86.5	16.9	2.0	2	1	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
OppC_N	PF12911.7	gi|336251884|ref|YP_004585852.1|	-	0.069	13.1	0.1	0.069	13.1	0.1	3.6	4	1	0	4	4	4	0	N-terminal	TM	domain	of	oligopeptide	transport	permease	C
ABC_tran	PF00005.27	gi|336251885|ref|YP_004585853.1|	-	4.2e-51	173.1	0.0	3.3e-27	95.7	0.0	2.2	2	0	0	2	2	2	2	ABC	transporter
oligo_HPY	PF08352.12	gi|336251885|ref|YP_004585853.1|	-	4e-35	120.1	4.5	1.1e-18	67.5	0.5	2.5	2	0	0	2	2	2	2	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|336251885|ref|YP_004585853.1|	-	5e-14	52.8	3.6	2.4e-07	30.9	0.6	4.1	3	1	1	4	4	4	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|336251885|ref|YP_004585853.1|	-	3.8e-07	29.8	1.7	0.064	12.7	0.0	4.0	3	1	0	3	3	3	2	RecF/RecN/SMC	N	terminal	domain
AAA_22	PF13401.6	gi|336251885|ref|YP_004585853.1|	-	9.8e-07	29.1	2.7	0.027	14.7	0.5	3.4	2	2	0	2	2	2	2	AAA	domain
AAA_29	PF13555.6	gi|336251885|ref|YP_004585853.1|	-	1.3e-05	24.9	0.0	0.16	11.7	0.0	2.4	2	0	0	2	2	2	2	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.6	gi|336251885|ref|YP_004585853.1|	-	2e-05	25.1	0.0	0.28	11.6	0.0	2.6	2	0	0	2	2	2	2	AAA	ATPase	domain
PhoH	PF02562.16	gi|336251885|ref|YP_004585853.1|	-	4.5e-05	23.0	0.0	0.29	10.5	0.0	2.4	2	0	0	2	2	2	2	PhoH-like	protein
NACHT	PF05729.12	gi|336251885|ref|YP_004585853.1|	-	7.4e-05	22.7	0.4	0.36	10.7	0.3	2.5	2	0	0	2	2	2	2	NACHT	domain
AAA_25	PF13481.6	gi|336251885|ref|YP_004585853.1|	-	0.00016	21.3	0.0	2.2	7.8	0.0	3.3	3	0	0	3	3	3	2	AAA	domain
IstB_IS21	PF01695.17	gi|336251885|ref|YP_004585853.1|	-	0.0003	20.6	0.1	0.64	9.7	0.0	2.8	3	0	0	3	3	3	2	IstB-like	ATP	binding	protein
RsgA_GTPase	PF03193.16	gi|336251885|ref|YP_004585853.1|	-	0.00036	20.5	0.1	0.19	11.6	0.1	2.3	2	0	0	2	2	2	1	RsgA	GTPase
AAA_24	PF13479.6	gi|336251885|ref|YP_004585853.1|	-	0.00042	20.1	0.2	0.81	9.4	0.0	2.6	2	0	0	2	2	2	2	AAA	domain
ATPase	PF06745.13	gi|336251885|ref|YP_004585853.1|	-	0.0013	18.1	0.1	0.69	9.2	0.1	2.4	2	0	0	2	2	2	1	KaiC
RNA_helicase	PF00910.22	gi|336251885|ref|YP_004585853.1|	-	0.0014	19.0	0.2	1.1	9.7	0.1	2.5	2	0	0	2	2	2	1	RNA	helicase
Sigma54_activat	PF00158.26	gi|336251885|ref|YP_004585853.1|	-	0.0015	18.2	0.0	0.36	10.5	0.0	2.4	2	0	0	2	2	2	1	Sigma-54	interaction	domain
NB-ARC	PF00931.22	gi|336251885|ref|YP_004585853.1|	-	0.0018	17.5	0.0	0.21	10.7	0.0	2.3	2	0	0	2	2	2	1	NB-ARC	domain
AAA_5	PF07728.14	gi|336251885|ref|YP_004585853.1|	-	0.0019	18.2	0.7	1.9	8.5	0.2	2.8	2	0	0	2	2	2	1	AAA	domain	(dynein-related	subfamily)
AAA_33	PF13671.6	gi|336251885|ref|YP_004585853.1|	-	0.002	18.3	0.2	1	9.5	0.0	2.4	2	0	0	2	2	2	1	AAA	domain
AAA_7	PF12775.7	gi|336251885|ref|YP_004585853.1|	-	0.0068	15.9	0.1	4.5	6.7	0.1	2.4	2	0	0	2	2	2	2	P-loop	containing	dynein	motor	region
AAA_23	PF13476.6	gi|336251885|ref|YP_004585853.1|	-	0.0077	16.8	0.0	1.3	9.5	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
AAA	PF00004.29	gi|336251885|ref|YP_004585853.1|	-	0.012	16.0	0.2	1.1	9.7	0.0	2.9	3	0	0	3	3	3	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
PRK	PF00485.18	gi|336251885|ref|YP_004585853.1|	-	0.013	15.3	0.3	1.4	8.6	0.0	2.3	2	0	0	2	2	2	0	Phosphoribulokinase	/	Uridine	kinase	family
Mg_chelatase	PF01078.21	gi|336251885|ref|YP_004585853.1|	-	0.023	14.1	0.0	5.1	6.4	0.0	2.7	3	0	0	3	3	2	0	Magnesium	chelatase,	subunit	ChlI
MMR_HSR1	PF01926.23	gi|336251885|ref|YP_004585853.1|	-	0.028	14.5	0.1	5.1	7.2	0.0	2.5	2	0	0	2	2	2	0	50S	ribosome-binding	GTPase
AAA_15	PF13175.6	gi|336251885|ref|YP_004585853.1|	-	0.031	14.0	2.1	8.2	6.0	0.1	3.1	2	1	1	3	3	3	0	AAA	ATPase	domain
MobB	PF03205.14	gi|336251885|ref|YP_004585853.1|	-	0.033	14.1	0.0	7.6	6.4	0.2	2.4	2	0	0	2	2	2	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
TsaE	PF02367.17	gi|336251885|ref|YP_004585853.1|	-	0.039	13.9	0.1	1.5	8.8	0.0	2.3	2	0	0	2	2	2	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
Roc	PF08477.13	gi|336251885|ref|YP_004585853.1|	-	0.057	13.6	0.2	2.8	8.2	0.1	2.3	2	0	0	2	2	2	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
AAA_30	PF13604.6	gi|336251885|ref|YP_004585853.1|	-	0.099	12.3	0.1	4.6	6.9	0.1	2.3	2	0	0	2	2	2	0	AAA	domain
PduV-EutP	PF10662.9	gi|336251885|ref|YP_004585853.1|	-	0.14	11.9	0.2	0.47	10.2	0.1	1.8	2	0	0	2	2	2	0	Ethanolamine	utilisation	-	propanediol	utilisation
Zeta_toxin	PF06414.12	gi|336251885|ref|YP_004585853.1|	-	0.15	11.3	0.0	7.4	5.8	0.0	2.4	2	0	0	2	2	2	0	Zeta	toxin
Septin	PF00735.18	gi|336251885|ref|YP_004585853.1|	-	0.18	11.1	0.1	1.8	7.8	0.0	2.1	2	0	0	2	2	2	0	Septin
SbcCD_C	PF13558.6	gi|336251885|ref|YP_004585853.1|	-	1.6	9.0	6.4	25	5.2	0.5	4.0	3	2	0	3	3	2	0	Putative	exonuclease	SbcCD,	C	subunit
DUF2628	PF10947.8	gi|336251886|ref|YP_004585854.1|	-	0.0049	17.2	0.1	0.0051	17.1	0.1	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF2628)
DUF2518	PF10726.9	gi|336251886|ref|YP_004585854.1|	-	0.043	13.5	2.2	0.048	13.3	2.2	1.1	1	0	0	1	1	1	0	Protein	of	function	(DUF2518)
FA_desaturase	PF00487.24	gi|336251886|ref|YP_004585854.1|	-	0.054	13.3	0.3	0.058	13.2	0.3	1.0	1	0	0	1	1	1	0	Fatty	acid	desaturase
DUF2207	PF09972.9	gi|336251886|ref|YP_004585854.1|	-	0.14	10.9	1.0	0.14	10.9	1.0	1.0	1	0	0	1	1	1	0	Predicted	membrane	protein	(DUF2207)
DUF2892	PF11127.8	gi|336251886|ref|YP_004585854.1|	-	3.6	7.7	11.2	5	7.2	11.2	1.3	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF2892)
RGI_lyase	PF18370.1	gi|336251887|ref|YP_004585855.1|	-	2.6e-31	107.8	0.0	5.3e-31	106.8	0.0	1.5	1	0	0	1	1	1	1	Rhamnogalacturonan	I	lyases	beta-sheet	domain
FG-GAP	PF01839.23	gi|336251887|ref|YP_004585855.1|	-	1.2e-09	38.1	19.6	0.00068	19.7	1.5	5.1	5	0	0	5	5	5	3	FG-GAP	repeat
VCBS	PF13517.6	gi|336251887|ref|YP_004585855.1|	-	1.8e-06	28.4	16.2	0.18	12.4	0.0	5.2	4	1	1	5	5	5	4	Repeat	domain	in	Vibrio,	Colwellia,	Bradyrhizobium	and	Shewanella
TcdB_toxin_midN	PF12256.8	gi|336251887|ref|YP_004585855.1|	-	0.0023	17.3	4.1	1.3	8.3	0.1	3.2	2	1	1	3	3	3	2	Insecticide	toxin	TcdB	middle/N-terminal	region
EF-hand_1	PF00036.32	gi|336251887|ref|YP_004585855.1|	-	6	6.7	7.6	45	3.9	0.2	4.4	4	0	0	4	4	4	0	EF	hand
CarboxypepD_reg	PF13620.6	gi|336251888|ref|YP_004585856.1|	-	3.6e-07	30.3	0.0	7.2e-07	29.4	0.0	1.5	1	0	0	1	1	1	1	Carboxypeptidase	regulatory-like	domain
PEGA	PF08308.11	gi|336251888|ref|YP_004585856.1|	-	3.7e-05	23.5	0.2	8.9e-05	22.3	0.1	1.7	2	0	0	2	2	2	1	PEGA	domain
Invasin_D3	PF09134.10	gi|336251888|ref|YP_004585856.1|	-	0.012	15.9	0.1	0.021	15.1	0.1	1.4	1	0	0	1	1	1	0	Invasin,	domain	3
YtkA	PF13115.6	gi|336251888|ref|YP_004585856.1|	-	0.064	13.9	2.4	0.76	10.4	0.4	2.1	2	0	0	2	2	2	0	YtkA-like
Glyco_hydro_4	PF02056.16	gi|336251889|ref|YP_004585857.1|	-	1.3e-49	168.3	0.0	1.9e-49	167.7	0.0	1.3	1	0	0	1	1	1	1	Family	4	glycosyl	hydrolase
Glyco_hydro_4C	PF11975.8	gi|336251889|ref|YP_004585857.1|	-	2.7e-46	158.3	0.0	4e-46	157.7	0.0	1.3	1	0	0	1	1	1	1	Family	4	glycosyl	hydrolase	C-terminal	domain
AP_endonuc_2	PF01261.24	gi|336251890|ref|YP_004585858.1|	-	1.7e-33	115.9	0.5	2.8e-33	115.2	0.5	1.3	1	0	0	1	1	1	1	Xylose	isomerase-like	TIM	barrel
LAL_C2	PF18603.1	gi|336251890|ref|YP_004585858.1|	-	0.093	12.9	1.6	0.23	11.6	0.1	2.5	3	0	0	3	3	3	0	L-amino	acid	ligase	C-terminal	domain	2
GFO_IDH_MocA	PF01408.22	gi|336251891|ref|YP_004585859.1|	-	3.3e-19	69.9	0.1	5.5e-19	69.2	0.1	1.4	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
FAA_hydrolase	PF01557.18	gi|336251892|ref|YP_004585860.1|	-	9.3e-70	234.7	0.0	1.1e-69	234.4	0.0	1.1	1	0	0	1	1	1	1	Fumarylacetoacetate	(FAA)	hydrolase	family
DUF2437	PF10370.9	gi|336251892|ref|YP_004585860.1|	-	0.0077	17.1	0.0	0.021	15.7	0.0	1.8	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF2437)
Amidohydro_2	PF04909.14	gi|336251893|ref|YP_004585861.1|	-	5.1e-26	92.1	11.3	5.9e-26	91.9	11.3	1.0	1	0	0	1	1	1	1	Amidohydrolase
Peptidase_M19	PF01244.21	gi|336251893|ref|YP_004585861.1|	-	0.19	10.9	0.0	0.29	10.3	0.0	1.3	1	0	0	1	1	1	0	Membrane	dipeptidase	(Peptidase	family	M19)
ADH_N	PF08240.12	gi|336251894|ref|YP_004585862.1|	-	1.9e-31	108.1	1.6	1.9e-31	108.1	1.6	2.0	2	0	0	2	2	2	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.26	gi|336251894|ref|YP_004585862.1|	-	9.9e-19	67.6	0.2	1.7e-18	66.8	0.2	1.4	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
Glu_dehyd_C	PF16912.5	gi|336251894|ref|YP_004585862.1|	-	2.5e-11	43.5	0.1	3.8e-11	42.9	0.1	1.2	1	0	0	1	1	1	1	Glucose	dehydrogenase	C-terminus
ADH_zinc_N_2	PF13602.6	gi|336251894|ref|YP_004585862.1|	-	3e-08	34.8	0.0	6.1e-08	33.8	0.0	1.5	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
MR_MLE_C	PF13378.6	gi|336251895|ref|YP_004585863.1|	-	1.7e-61	207.6	1.4	2.7e-61	206.9	1.4	1.3	1	0	0	1	1	1	1	Enolase	C-terminal	domain-like
MR_MLE_N	PF02746.16	gi|336251895|ref|YP_004585863.1|	-	2.9e-19	69.4	0.2	5.2e-19	68.6	0.2	1.4	1	0	0	1	1	1	1	Mandelate	racemase	/	muconate	lactonizing	enzyme,	N-terminal	domain
Bac_luciferase	PF00296.20	gi|336251896|ref|YP_004585864.1|	-	2.4e-58	198.0	0.2	4.4e-58	197.2	0.2	1.3	1	1	0	1	1	1	1	Luciferase-like	monooxygenase
adh_short_C2	PF13561.6	gi|336251897|ref|YP_004585865.1|	-	1e-64	218.3	2.3	1.3e-64	218.0	2.3	1.0	1	0	0	1	1	1	1	Enoyl-(Acyl	carrier	protein)	reductase
adh_short	PF00106.25	gi|336251897|ref|YP_004585865.1|	-	1.1e-49	168.6	0.5	1.4e-49	168.2	0.5	1.1	1	0	0	1	1	1	1	short	chain	dehydrogenase
KR	PF08659.10	gi|336251897|ref|YP_004585865.1|	-	4.5e-13	49.5	0.2	7e-13	48.9	0.2	1.3	1	1	0	1	1	1	1	KR	domain
Epimerase	PF01370.21	gi|336251897|ref|YP_004585865.1|	-	3.4e-05	23.4	0.1	5.4e-05	22.8	0.1	1.5	1	1	0	1	1	1	1	NAD	dependent	epimerase/dehydratase	family
2-Hacid_dh_C	PF02826.19	gi|336251897|ref|YP_004585865.1|	-	0.021	14.2	0.0	0.034	13.5	0.0	1.3	1	0	0	1	1	1	0	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
Amidase_2	PF01510.25	gi|336251897|ref|YP_004585865.1|	-	0.052	14.0	0.0	0.093	13.2	0.0	1.4	1	1	0	1	1	1	0	N-acetylmuramoyl-L-alanine	amidase
THF_DHG_CYH_C	PF02882.19	gi|336251897|ref|YP_004585865.1|	-	0.093	12.0	0.0	0.17	11.2	0.0	1.4	1	0	0	1	1	1	0	Tetrahydrofolate	dehydrogenase/cyclohydrolase,	NAD(P)-binding	domain
Glyco_hydro_43	PF04616.14	gi|336251898|ref|YP_004585866.1|	-	8.1e-11	41.8	8.6	2.1e-09	37.1	4.4	2.5	1	1	1	2	2	2	2	Glycosyl	hydrolases	family	43
BNR_2	PF13088.6	gi|336251898|ref|YP_004585866.1|	-	0.0011	18.4	1.2	0.0017	17.7	1.1	1.4	1	1	0	1	1	1	1	BNR	repeat-like	domain
Glyco_hydro_43	PF04616.14	gi|336251899|ref|YP_004585867.1|	-	3.9e-07	29.7	0.1	1.7e-06	27.6	0.1	1.8	1	1	0	1	1	1	1	Glycosyl	hydrolases	family	43
Glyco_hydro_32N	PF00251.20	gi|336251899|ref|YP_004585867.1|	-	0.00027	20.6	0.0	0.017	14.7	0.0	2.4	2	0	0	2	2	2	2	Glycosyl	hydrolases	family	32	N-terminal	domain
Pectate_lyase22	PF14583.6	gi|336251900|ref|YP_004585868.1|	-	3.7e-35	121.3	0.5	1.6e-29	102.8	0.0	2.0	2	0	0	2	2	2	2	Oligogalacturonate	lyase
PD40	PF07676.12	gi|336251900|ref|YP_004585868.1|	-	1.6e-06	27.9	8.6	0.012	15.6	0.9	3.0	2	1	0	2	2	2	2	WD40-like	Beta	Propeller	Repeat
RicinB_lectin_2	PF14200.6	gi|336251901|ref|YP_004585869.1|	-	3.8e-22	78.8	1.2	1.2e-11	45.2	0.1	4.5	3	2	3	6	6	6	4	Ricin-type	beta-trefoil	lectin	domain-like
Beta_helix	PF13229.6	gi|336251901|ref|YP_004585869.1|	-	1.3e-07	31.6	26.4	1.2e-05	25.2	10.4	2.7	1	1	2	3	3	3	3	Right	handed	beta	helix	region
Glyco_hydro_28	PF00295.17	gi|336251902|ref|YP_004585870.1|	-	5.7e-26	91.3	0.0	1.5e-19	70.2	0.0	2.3	2	0	0	2	2	2	2	Glycosyl	hydrolases	family	28
Beta_helix	PF13229.6	gi|336251902|ref|YP_004585870.1|	-	1.8e-11	44.1	0.3	4e-09	36.5	0.3	3.3	1	1	0	2	2	2	1	Right	handed	beta	helix	region
Pectate_lyase_3	PF12708.7	gi|336251902|ref|YP_004585870.1|	-	2.1e-08	34.3	0.0	0.002	18.0	0.0	2.6	3	0	0	3	3	3	2	Pectate	lyase	superfamily	protein
NosD	PF05048.13	gi|336251902|ref|YP_004585870.1|	-	0.0025	17.1	0.0	0.0075	15.6	0.0	1.8	1	0	0	1	1	1	1	Periplasmic	copper-binding	protein	(NosD)
ssDBP_DBD	PF18361.1	gi|336251902|ref|YP_004585870.1|	-	0.025	14.7	0.0	0.051	13.7	0.0	1.4	1	0	0	1	1	1	0	Single	stranded	DNA-binding	protein	ss	DNA	binding	domain
Adeno_E1B_55K	PF01696.17	gi|336251902|ref|YP_004585870.1|	-	0.061	12.0	0.2	0.11	11.2	0.2	1.4	1	0	0	1	1	1	0	Adenovirus	EB1	55K	protein	/	large	t-antigen
Bac_rhamnosid6H	PF17389.2	gi|336251903|ref|YP_004585871.1|	-	1.7e-38	132.7	0.0	2.4e-38	132.3	0.0	1.1	1	0	0	1	1	1	1	Bacterial	alpha-L-rhamnosidase	6	hairpin	glycosidase	domain
Bac_rhamnosid_N	PF08531.10	gi|336251903|ref|YP_004585871.1|	-	4.9e-22	78.6	0.0	1.4e-21	77.1	0.0	1.8	1	0	0	1	1	1	1	Alpha-L-rhamnosidase	N-terminal	domain
Bac_rhamnosid_C	PF17390.2	gi|336251903|ref|YP_004585871.1|	-	2.2e-11	43.4	0.0	4.7e-11	42.3	0.0	1.4	1	0	0	1	1	1	1	Bacterial	alpha-L-rhamnosidase	C-terminal	domain
Bac_rhamnosid	PF05592.11	gi|336251903|ref|YP_004585871.1|	-	1.6e-10	40.8	0.0	3.3e-10	39.9	0.0	1.5	1	0	0	1	1	1	1	Bacterial	alpha-L-rhamnosidase	concanavalin-like	domain
Glyco_hydro_36	PF17167.4	gi|336251903|ref|YP_004585871.1|	-	0.0089	14.8	0.0	0.014	14.1	0.0	1.2	1	0	0	1	1	1	1	Glycosyl	hydrolase	36	superfamily,	catalytic	domain
MCPsignal	PF00015.21	gi|336251904|ref|YP_004585872.1|	-	6.4e-41	140.0	58.3	4.2e-40	137.4	21.9	5.3	2	1	3	5	5	5	2	Methyl-accepting	chemotaxis	protein	(MCP)	signalling	domain
Laminin_II	PF06009.12	gi|336251904|ref|YP_004585872.1|	-	1.6e-06	28.2	33.3	0.0035	17.4	0.9	5.5	2	2	2	5	5	5	4	Laminin	Domain	II
dCache_1	PF02743.18	gi|336251904|ref|YP_004585872.1|	-	0.00022	21.1	0.6	0.00022	21.1	0.6	3.0	3	1	0	3	3	3	1	Cache	domain
HAMP	PF00672.25	gi|336251904|ref|YP_004585872.1|	-	0.00033	21.0	8.2	0.00093	19.5	1.6	6.2	6	1	1	7	7	6	2	HAMP	domain
Spectrin	PF00435.21	gi|336251904|ref|YP_004585872.1|	-	0.0017	18.8	16.6	1.1	9.8	0.7	5.2	3	2	2	5	5	5	1	Spectrin	repeat
ATP-synt_B	PF00430.18	gi|336251904|ref|YP_004585872.1|	-	0.0034	17.5	9.1	0.0034	17.5	9.1	5.0	4	1	1	5	5	4	1	ATP	synthase	B/B'	CF(0)
DUF948	PF06103.11	gi|336251904|ref|YP_004585872.1|	-	0.004	17.4	40.9	0.031	14.5	4.0	7.4	4	2	2	7	7	6	2	Bacterial	protein	of	unknown	function	(DUF948)
DUF1664	PF07889.12	gi|336251904|ref|YP_004585872.1|	-	0.0093	16.0	30.7	0.8	9.8	5.7	5.9	2	2	4	6	6	6	3	Protein	of	unknown	function	(DUF1664)
ApoLp-III	PF07464.11	gi|336251904|ref|YP_004585872.1|	-	0.019	15.0	2.7	0.019	15.0	2.7	5.7	3	3	3	6	6	6	0	Apolipophorin-III	precursor	(apoLp-III)
bZIP_1	PF00170.21	gi|336251904|ref|YP_004585872.1|	-	0.048	13.8	1.0	0.53	10.4	0.0	3.2	4	0	0	4	4	3	0	bZIP	transcription	factor
NPV_P10	PF05531.12	gi|336251904|ref|YP_004585872.1|	-	0.053	14.0	27.4	0.13	12.8	0.2	5.9	3	2	1	4	4	4	0	Nucleopolyhedrovirus	P10	protein
TSNAXIP1_N	PF15739.5	gi|336251904|ref|YP_004585872.1|	-	0.075	13.4	18.3	0.8	10.1	0.3	5.1	4	1	0	5	5	5	0	Translin-associated	factor	X-interacting	N-terminus
DASH_Duo1	PF08651.10	gi|336251904|ref|YP_004585872.1|	-	0.085	12.6	9.6	3.9	7.3	0.4	5.0	6	0	0	6	6	5	0	DASH	complex	subunit	Duo1
Ran-binding	PF05508.11	gi|336251904|ref|YP_004585872.1|	-	0.1	11.5	18.3	0.32	9.9	3.4	3.8	2	1	2	4	4	4	0	RanGTP-binding	protein
AAA_13	PF13166.6	gi|336251904|ref|YP_004585872.1|	-	0.12	11.0	28.5	0.1	11.2	7.5	2.8	1	1	1	2	2	2	0	AAA	domain
RPW8	PF05659.11	gi|336251904|ref|YP_004585872.1|	-	0.13	12.0	8.7	2.3	7.9	0.1	4.5	3	2	2	5	5	5	0	Arabidopsis	broad-spectrum	mildew	resistance	protein	RPW8
PI3K_P85_iSH2	PF16454.5	gi|336251904|ref|YP_004585872.1|	-	0.16	11.5	4.9	0.82	9.3	0.2	2.9	3	0	0	3	3	3	0	Phosphatidylinositol	3-kinase	regulatory	subunit	P85	inter-SH2	domain
BLOC1_2	PF10046.9	gi|336251904|ref|YP_004585872.1|	-	0.17	12.2	28.6	1.1	9.6	0.1	6.9	3	2	4	7	7	7	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
Med30	PF11315.8	gi|336251904|ref|YP_004585872.1|	-	0.18	12.0	6.9	7.5	6.7	0.5	3.5	3	0	0	3	3	3	0	Mediator	complex	subunit	30
Prominin	PF05478.11	gi|336251904|ref|YP_004585872.1|	-	0.19	9.6	8.9	2.6	5.9	0.6	3.3	1	1	1	3	3	3	0	Prominin
Spc7	PF08317.11	gi|336251904|ref|YP_004585872.1|	-	0.24	10.2	30.8	0.26	10.1	2.6	3.3	2	1	1	3	3	3	0	Spc7	kinetochore	protein
TPR_MLP1_2	PF07926.12	gi|336251904|ref|YP_004585872.1|	-	0.41	10.7	33.2	0.23	11.5	2.7	4.6	3	1	1	4	4	4	0	TPR/MLP1/MLP2-like	protein
DUF2203	PF09969.9	gi|336251904|ref|YP_004585872.1|	-	0.41	11.4	27.0	1.9	9.2	2.3	5.4	3	1	1	5	5	5	0	Uncharacterized	conserved	protein	(DUF2203)
CENP-F_leu_zip	PF10473.9	gi|336251904|ref|YP_004585872.1|	-	0.46	10.5	29.8	0.03	14.4	4.9	4.7	2	2	1	3	3	3	0	Leucine-rich	repeats	of	kinetochore	protein	Cenp-F/LEK1
Sec34	PF04136.15	gi|336251904|ref|YP_004585872.1|	-	0.57	10.0	10.7	15	5.4	0.3	5.0	2	2	3	6	6	6	0	Sec34-like	family
DUF2913	PF11140.8	gi|336251904|ref|YP_004585872.1|	-	0.63	9.8	2.0	3.8	7.2	0.1	3.0	3	0	0	3	3	2	0	Protein	of	unknown	function	(DUF2913)
Fzo_mitofusin	PF04799.13	gi|336251904|ref|YP_004585872.1|	-	1.1	8.8	13.0	2.1	7.9	0.1	4.8	3	2	2	5	5	5	0	fzo-like	conserved	region
Serine_rich	PF08824.10	gi|336251904|ref|YP_004585872.1|	-	1.2	9.1	9.8	0.18	11.8	0.4	3.3	2	1	1	3	3	3	0	Serine	rich	protein	interaction	domain
Rootletin	PF15035.6	gi|336251904|ref|YP_004585872.1|	-	1.3	9.0	16.8	0.28	11.2	5.7	3.6	2	1	1	3	3	3	0	Ciliary	rootlet	component,	centrosome	cohesion
Mce4_CUP1	PF11887.8	gi|336251904|ref|YP_004585872.1|	-	2	7.8	15.8	0.93	8.9	2.6	2.9	3	0	0	3	3	2	0	Cholesterol	uptake	porter	CUP1	of	Mce4,	putative
Atg14	PF10186.9	gi|336251904|ref|YP_004585872.1|	-	2.4	7.2	9.0	3.7	6.5	0.1	3.2	1	1	1	2	2	2	0	Vacuolar	sorting	38	and	autophagy-related	subunit	14
HMMR_N	PF15905.5	gi|336251904|ref|YP_004585872.1|	-	3.2	7.1	23.1	2.8	7.4	5.6	3.9	2	2	2	4	4	4	0	Hyaluronan	mediated	motility	receptor	N-terminal
YabA	PF06156.13	gi|336251904|ref|YP_004585872.1|	-	3.7	8.3	16.9	37	5.0	0.5	5.4	2	2	3	5	5	5	0	Initiation	control	protein	YabA
SKA1	PF07160.12	gi|336251904|ref|YP_004585872.1|	-	7.4	6.4	9.1	1.3	8.8	0.7	3.2	2	1	2	4	4	4	0	Spindle	and	kinetochore-associated	protein	1
Baculo_PEP_C	PF04513.12	gi|336251904|ref|YP_004585872.1|	-	9.3	6.3	20.9	1.8	8.6	1.4	5.0	2	2	3	5	5	5	0	Baculovirus	polyhedron	envelope	protein,	PEP,	C	terminus
DUF2264	PF10022.9	gi|336251905|ref|YP_004585873.1|	-	8e-125	416.6	0.1	1e-124	416.2	0.1	1.1	1	0	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2264)
CBM9_2	PF16011.5	gi|336251906|ref|YP_004585874.1|	-	4.6e-29	101.5	0.0	5.9e-29	101.2	0.0	1.1	1	0	0	1	1	1	1	Carbohydrate-binding	family	9
CBM9_1	PF06452.11	gi|336251906|ref|YP_004585874.1|	-	3.9e-08	33.4	0.2	2.5e-07	30.8	0.2	2.2	1	1	0	1	1	1	1	Carbohydrate	family	9	binding	domain-like
rhaM	PF05336.13	gi|336251907|ref|YP_004585875.1|	-	4.1e-14	52.6	0.1	4.6e-14	52.4	0.1	1.0	1	0	0	1	1	1	1	L-rhamnose	mutarotase
DUF1654	PF07867.11	gi|336251907|ref|YP_004585875.1|	-	0.21	11.4	2.2	0.29	10.9	1.5	1.7	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1654)
Glyco_hydro_2_C	PF02836.17	gi|336251908|ref|YP_004585876.1|	-	1.7e-107	359.0	0.0	2.7e-107	358.4	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	hydrolases	family	2,	TIM	barrel	domain
Bgal_small_N	PF02929.17	gi|336251908|ref|YP_004585876.1|	-	2e-73	247.0	0.0	3.5e-73	246.2	0.0	1.4	1	0	0	1	1	1	1	Beta	galactosidase	small	chain
Glyco_hydro_2_N	PF02837.18	gi|336251908|ref|YP_004585876.1|	-	4.2e-52	176.5	0.4	8.1e-52	175.5	0.4	1.5	1	0	0	1	1	1	1	Glycosyl	hydrolases	family	2,	sugar	binding	domain
DUF4981	PF16353.5	gi|336251908|ref|YP_004585876.1|	-	1e-28	99.6	0.1	1.4e-26	92.8	0.0	3.0	2	0	0	2	2	2	1	Domain	of	unknown	function(DUF4981)
Glyco_hydro_2	PF00703.21	gi|336251908|ref|YP_004585876.1|	-	7.3e-21	74.9	0.1	2.4e-20	73.2	0.1	2.0	1	0	0	1	1	1	1	Glycosyl	hydrolases	family	2
Fn3-like	PF14310.6	gi|336251908|ref|YP_004585876.1|	-	4e-05	23.6	0.5	0.11	12.6	0.0	4.5	4	1	1	5	5	5	1	Fibronectin	type	III-like	domain
BetaGal_dom4_5	PF13364.6	gi|336251908|ref|YP_004585876.1|	-	0.0066	17.0	0.2	0.022	15.3	0.2	1.9	1	0	0	1	1	1	1	Beta-galactosidase	jelly	roll	domain
Inositol_P	PF00459.25	gi|336251910|ref|YP_004585878.1|	-	1.1e-48	166.1	0.0	1.2e-48	166.0	0.0	1.0	1	0	0	1	1	1	1	Inositol	monophosphatase	family
Inositol_P	PF00459.25	gi|336251911|ref|YP_004585879.1|	-	1.9e-60	204.7	0.0	2.3e-60	204.4	0.0	1.0	1	0	0	1	1	1	1	Inositol	monophosphatase	family
FBPase	PF00316.20	gi|336251911|ref|YP_004585879.1|	-	0.12	11.8	0.0	0.19	11.2	0.0	1.2	1	0	0	1	1	1	0	Fructose-1-6-bisphosphatase,	N-terminal	domain
CbiQ	PF02361.16	gi|336251912|ref|YP_004585880.1|	-	5.3e-10	39.3	12.6	1.3e-09	38.0	12.6	1.6	1	1	0	1	1	1	1	Cobalt	transport	protein
DUF21	PF01595.20	gi|336251912|ref|YP_004585880.1|	-	0.75	9.5	7.2	1.1	8.9	5.1	2.1	2	1	0	2	2	2	0	Cyclin	M	transmembrane	N-terminal	domain
ABC_tran	PF00005.27	gi|336251913|ref|YP_004585881.1|	-	3.5e-52	176.5	0.0	4.1e-26	92.1	0.0	2.3	2	0	0	2	2	2	2	ABC	transporter
AAA_21	PF13304.6	gi|336251913|ref|YP_004585881.1|	-	9.4e-19	68.3	9.6	5.9e-05	23.0	0.2	4.3	2	2	1	4	4	4	4	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|336251913|ref|YP_004585881.1|	-	1.4e-12	47.5	0.4	0.0048	16.4	0.0	4.1	3	1	0	3	3	3	3	RecF/RecN/SMC	N	terminal	domain
AAA_13	PF13166.6	gi|336251913|ref|YP_004585881.1|	-	1.3e-08	34.1	0.0	0.017	13.8	0.0	3.1	3	0	0	3	3	3	3	AAA	domain
AAA_29	PF13555.6	gi|336251913|ref|YP_004585881.1|	-	9e-08	31.7	0.0	0.021	14.6	0.0	2.4	2	0	0	2	2	2	2	P-loop	containing	region	of	AAA	domain
AAA_23	PF13476.6	gi|336251913|ref|YP_004585881.1|	-	3.5e-07	30.9	0.0	0.0085	16.6	0.0	2.5	2	1	0	2	2	2	2	AAA	domain
AAA_15	PF13175.6	gi|336251913|ref|YP_004585881.1|	-	2.8e-06	27.3	0.2	0.023	14.4	0.0	3.4	4	0	0	4	4	4	2	AAA	ATPase	domain
AAA_16	PF13191.6	gi|336251913|ref|YP_004585881.1|	-	3.5e-06	27.5	0.0	0.03	14.7	0.0	2.5	2	0	0	2	2	2	2	AAA	ATPase	domain
AAA_28	PF13521.6	gi|336251913|ref|YP_004585881.1|	-	1.9e-05	25.0	4.1	0.27	11.4	1.4	3.8	3	1	0	3	3	2	2	AAA	domain
AAA_22	PF13401.6	gi|336251913|ref|YP_004585881.1|	-	2.2e-05	24.8	0.4	0.17	12.1	0.5	3.3	2	1	0	2	2	2	1	AAA	domain
DUF3584	PF12128.8	gi|336251913|ref|YP_004585881.1|	-	4.2e-05	21.3	0.3	0.0076	13.8	0.0	2.4	3	0	0	3	3	3	2	Protein	of	unknown	function	(DUF3584)
MMR_HSR1	PF01926.23	gi|336251913|ref|YP_004585881.1|	-	5.6e-05	23.2	0.3	0.005	16.9	0.1	2.9	3	1	0	3	3	2	1	50S	ribosome-binding	GTPase
AAA_24	PF13479.6	gi|336251913|ref|YP_004585881.1|	-	7.3e-05	22.6	0.0	0.048	13.4	0.0	2.8	3	0	0	3	3	2	1	AAA	domain
AAA_30	PF13604.6	gi|336251913|ref|YP_004585881.1|	-	0.00049	19.9	0.0	1.1	8.9	0.0	3.0	2	1	0	2	2	2	2	AAA	domain
AAA_25	PF13481.6	gi|336251913|ref|YP_004585881.1|	-	0.00058	19.5	2.3	1.5	8.4	0.2	4.0	2	1	1	3	3	3	1	AAA	domain
AAA_18	PF13238.6	gi|336251913|ref|YP_004585881.1|	-	0.00081	19.9	0.0	1.4	9.5	0.0	3.0	3	0	0	3	3	2	1	AAA	domain
NACHT	PF05729.12	gi|336251913|ref|YP_004585881.1|	-	0.0012	18.7	0.8	1.3	8.9	0.0	2.3	2	0	0	2	2	2	2	NACHT	domain
NB-ARC	PF00931.22	gi|336251913|ref|YP_004585881.1|	-	0.0013	18.0	0.0	0.22	10.7	0.0	2.2	2	0	0	2	2	2	1	NB-ARC	domain
RsgA_GTPase	PF03193.16	gi|336251913|ref|YP_004585881.1|	-	0.0016	18.4	0.0	0.14	12.1	0.0	2.5	2	0	0	2	2	2	1	RsgA	GTPase
Zeta_toxin	PF06414.12	gi|336251913|ref|YP_004585881.1|	-	0.0024	17.2	0.0	0.14	11.4	0.0	2.5	2	0	0	2	2	2	1	Zeta	toxin
KdpD	PF02702.17	gi|336251913|ref|YP_004585881.1|	-	0.0026	17.3	0.7	0.012	15.1	0.0	2.4	3	0	0	3	3	3	1	Osmosensitive	K+	channel	His	kinase	sensor	domain
G-alpha	PF00503.20	gi|336251913|ref|YP_004585881.1|	-	0.0049	16.1	0.0	0.95	8.5	0.0	2.2	2	0	0	2	2	2	1	G-protein	alpha	subunit
PduV-EutP	PF10662.9	gi|336251913|ref|YP_004585881.1|	-	0.0061	16.3	0.1	1.1	9.1	0.0	2.5	2	0	0	2	2	2	1	Ethanolamine	utilisation	-	propanediol	utilisation
ATPase	PF06745.13	gi|336251913|ref|YP_004585881.1|	-	0.0094	15.3	0.0	0.16	11.3	0.0	2.6	3	0	0	3	3	3	1	KaiC
AAA	PF00004.29	gi|336251913|ref|YP_004585881.1|	-	0.015	15.8	0.4	5.9	7.3	0.0	3.4	2	2	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
DLIC	PF05783.11	gi|336251913|ref|YP_004585881.1|	-	0.015	14.2	0.0	1.6	7.5	0.0	2.1	2	0	0	2	2	2	0	Dynein	light	intermediate	chain	(DLIC)
AAA_27	PF13514.6	gi|336251913|ref|YP_004585881.1|	-	0.017	14.7	0.0	1.5	8.4	0.0	2.3	2	0	0	2	2	2	0	AAA	domain
Roc	PF08477.13	gi|336251913|ref|YP_004585881.1|	-	0.019	15.2	0.0	7.3	6.8	0.0	2.6	2	0	0	2	2	2	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
NTPase_1	PF03266.15	gi|336251913|ref|YP_004585881.1|	-	0.023	14.6	0.3	4.8	7.1	0.0	3.0	3	0	0	3	3	3	0	NTPase
MukB	PF04310.12	gi|336251913|ref|YP_004585881.1|	-	0.024	14.4	0.0	2	8.2	0.0	2.3	2	0	0	2	2	2	0	MukB	N-terminal
TsaE	PF02367.17	gi|336251913|ref|YP_004585881.1|	-	0.025	14.6	0.0	11	6.1	0.0	2.6	2	0	0	2	2	2	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
Mg_chelatase	PF01078.21	gi|336251913|ref|YP_004585881.1|	-	0.03	13.7	0.0	1.8	7.9	0.0	2.4	2	0	0	2	2	2	0	Magnesium	chelatase,	subunit	ChlI
SpoOE-like	PF09388.10	gi|336251913|ref|YP_004585881.1|	-	0.031	14.2	2.7	0.14	12.1	0.1	2.4	2	0	0	2	2	2	0	Spo0E	like	sporulation	regulatory	protein
AAA_14	PF13173.6	gi|336251913|ref|YP_004585881.1|	-	0.031	14.3	0.0	8.7	6.4	0.0	2.5	2	0	0	2	2	2	0	AAA	domain
SRP54	PF00448.22	gi|336251913|ref|YP_004585881.1|	-	0.031	13.9	0.1	8.7	5.9	0.0	2.4	2	0	0	2	2	2	0	SRP54-type	protein,	GTPase	domain
AAA_33	PF13671.6	gi|336251913|ref|YP_004585881.1|	-	0.032	14.4	0.1	2.1	8.5	0.0	2.6	2	0	0	2	2	2	0	AAA	domain
FtsK_SpoIIIE	PF01580.18	gi|336251913|ref|YP_004585881.1|	-	0.034	13.5	0.0	5.9	6.2	0.0	2.4	2	0	0	2	2	2	0	FtsK/SpoIIIE	family
ATP_bind_1	PF03029.17	gi|336251913|ref|YP_004585881.1|	-	0.038	13.8	0.6	0.85	9.4	0.2	2.6	2	0	0	2	2	2	0	Conserved	hypothetical	ATP	binding	protein
AAA_17	PF13207.6	gi|336251913|ref|YP_004585881.1|	-	0.041	14.3	0.5	4.3	7.8	0.5	2.8	2	0	0	2	2	2	0	AAA	domain
DUF87	PF01935.17	gi|336251913|ref|YP_004585881.1|	-	0.045	13.8	0.0	11	6.0	0.0	2.8	3	0	0	3	3	2	0	Helicase	HerA,	central	domain
IstB_IS21	PF01695.17	gi|336251913|ref|YP_004585881.1|	-	0.061	13.0	0.0	14	5.4	0.0	3.1	3	0	0	3	3	3	0	IstB-like	ATP	binding	protein
T2SSE	PF00437.20	gi|336251913|ref|YP_004585881.1|	-	0.078	12.0	0.1	7.5	5.5	0.0	3.0	3	0	0	3	3	3	0	Type	II/IV	secretion	system	protein
RNA_helicase	PF00910.22	gi|336251913|ref|YP_004585881.1|	-	0.088	13.2	0.0	21	5.6	0.0	2.4	2	0	0	2	2	2	0	RNA	helicase
Pox_A32	PF04665.12	gi|336251913|ref|YP_004585881.1|	-	0.14	11.6	0.1	3.1	7.2	0.0	2.2	2	0	0	2	2	2	0	Poxvirus	A32	protein
MobB	PF03205.14	gi|336251913|ref|YP_004585881.1|	-	0.24	11.3	0.5	31	4.5	0.0	3.1	3	0	0	3	3	3	0	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
cobW	PF02492.19	gi|336251913|ref|YP_004585881.1|	-	0.26	10.9	2.5	5.3	6.6	0.1	2.7	2	0	0	2	2	2	0	CobW/HypB/UreG,	nucleotide-binding	domain
PNISR	PF15996.5	gi|336251915|ref|YP_004585883.1|	-	0.22	11.7	10.1	0.25	11.6	10.1	1.2	1	0	0	1	1	1	0	Arginine/serine-rich	protein	PNISR
Apt1	PF10351.9	gi|336251915|ref|YP_004585883.1|	-	0.43	9.4	10.4	0.43	9.4	10.4	1.1	1	0	0	1	1	1	0	Golgi-body	localisation	protein	domain
Dicty_REP	PF05086.12	gi|336251915|ref|YP_004585883.1|	-	1.6	6.6	7.0	1.4	6.8	7.0	1.0	1	0	0	1	1	1	0	Dictyostelium	(Slime	Mold)	REP	protein
SAPS	PF04499.15	gi|336251915|ref|YP_004585883.1|	-	1.7	7.3	10.9	1.8	7.3	10.9	1.2	1	0	0	1	1	1	0	SIT4	phosphatase-associated	protein
Macoilin	PF09726.9	gi|336251915|ref|YP_004585883.1|	-	2	6.9	6.1	2	6.9	6.1	1.1	1	0	0	1	1	1	0	Macoilin	family
Presenilin	PF01080.17	gi|336251915|ref|YP_004585883.1|	-	3.7	6.2	10.7	3.9	6.2	10.7	1.1	1	0	0	1	1	1	0	Presenilin
CDC45	PF02724.14	gi|336251915|ref|YP_004585883.1|	-	4.1	5.6	15.6	4.5	5.5	15.6	1.1	1	0	0	1	1	1	0	CDC45-like	protein
RAP1	PF07218.11	gi|336251915|ref|YP_004585883.1|	-	4.6	5.4	7.8	5.2	5.2	7.8	1.0	1	0	0	1	1	1	0	Rhoptry-associated	protein	1	(RAP-1)
Peroxin-3	PF04882.12	gi|336251915|ref|YP_004585883.1|	-	4.9	6.0	11.0	6.7	5.6	11.0	1.2	1	0	0	1	1	1	0	Peroxin-3
GREB1	PF15782.5	gi|336251915|ref|YP_004585883.1|	-	7.3	3.6	9.5	7.7	3.5	9.5	1.0	1	0	0	1	1	1	0	Gene	regulated	by	oestrogen	in	breast	cancer
SDA1	PF05285.12	gi|336251915|ref|YP_004585883.1|	-	9.3	5.6	21.1	10	5.4	21.1	1.1	1	0	0	1	1	1	0	SDA1
AAA_31	PF13614.6	gi|336251916|ref|YP_004585884.1|	-	4.3e-29	101.7	0.0	5.8e-29	101.2	0.0	1.1	1	0	0	1	1	1	1	AAA	domain
CbiA	PF01656.23	gi|336251916|ref|YP_004585884.1|	-	1.3e-11	44.6	0.0	1.9e-11	44.1	0.0	1.3	1	0	0	1	1	1	1	CobQ/CobB/MinD/ParA	nucleotide	binding	domain
CBP_BcsQ	PF06564.12	gi|336251916|ref|YP_004585884.1|	-	6.9e-06	25.7	0.0	0.00032	20.3	0.0	2.1	2	0	0	2	2	2	1	Cellulose	biosynthesis	protein	BcsQ
ParA	PF10609.9	gi|336251916|ref|YP_004585884.1|	-	1.5e-05	24.5	0.2	2.7e-05	23.7	0.3	1.5	1	1	0	1	1	1	1	NUBPL	iron-transfer	P-loop	NTPase
Fer4_NifH	PF00142.18	gi|336251916|ref|YP_004585884.1|	-	0.00038	20.0	0.0	0.0041	16.6	0.0	2.4	2	0	0	2	2	2	1	4Fe-4S	iron	sulfur	cluster	binding	proteins,	NifH/frxC	family
MipZ	PF09140.11	gi|336251916|ref|YP_004585884.1|	-	0.00045	19.6	0.1	0.023	14.0	0.0	2.3	2	0	0	2	2	2	1	ATPase	MipZ
ArsA_ATPase	PF02374.15	gi|336251916|ref|YP_004585884.1|	-	0.0043	16.3	0.5	0.029	13.6	0.0	2.3	3	0	0	3	3	3	1	Anion-transporting	ATPase
AAA_25	PF13481.6	gi|336251916|ref|YP_004585884.1|	-	0.11	12.1	0.0	0.2	11.2	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
VirC1	PF07015.11	gi|336251916|ref|YP_004585884.1|	-	0.16	11.2	0.0	0.36	10.1	0.0	1.5	1	0	0	1	1	1	0	VirC1	protein
ABC_tran	PF00005.27	gi|336251917|ref|YP_004585885.1|	-	5.2e-51	172.8	0.0	1e-26	94.1	0.0	2.3	2	0	0	2	2	2	2	ABC	transporter
oligo_HPY	PF08352.12	gi|336251917|ref|YP_004585885.1|	-	1.9e-33	114.8	0.7	9.6e-18	64.5	0.1	2.6	2	0	0	2	2	2	2	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|336251917|ref|YP_004585885.1|	-	8.5e-17	61.9	0.2	1.4e-07	31.6	0.3	4.2	3	1	1	4	4	4	3	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|336251917|ref|YP_004585885.1|	-	7.5e-07	28.8	1.2	0.068	12.6	0.0	4.2	3	1	0	3	3	3	1	RecF/RecN/SMC	N	terminal	domain
IstB_IS21	PF01695.17	gi|336251917|ref|YP_004585885.1|	-	5.5e-06	26.2	0.0	0.75	9.5	0.0	3.3	3	0	0	3	3	3	2	IstB-like	ATP	binding	protein
AAA_29	PF13555.6	gi|336251917|ref|YP_004585885.1|	-	1.1e-05	25.1	0.0	0.16	11.7	0.0	2.5	2	0	0	2	2	2	2	P-loop	containing	region	of	AAA	domain
AAA_25	PF13481.6	gi|336251917|ref|YP_004585885.1|	-	1.1e-05	25.1	0.0	0.27	10.8	0.0	3.4	3	0	0	3	3	3	2	AAA	domain
AAA_16	PF13191.6	gi|336251917|ref|YP_004585885.1|	-	4.3e-05	24.0	0.0	0.57	10.6	0.0	2.7	2	1	0	2	2	2	2	AAA	ATPase	domain
NACHT	PF05729.12	gi|336251917|ref|YP_004585885.1|	-	0.00014	21.9	0.7	0.57	10.1	0.0	2.5	2	0	0	2	2	2	2	NACHT	domain
AAA_22	PF13401.6	gi|336251917|ref|YP_004585885.1|	-	0.00015	22.0	6.8	0.32	11.2	0.2	3.8	2	2	0	2	2	2	2	AAA	domain
ATPase	PF06745.13	gi|336251917|ref|YP_004585885.1|	-	0.00031	20.2	0.2	0.57	9.5	0.0	3.0	3	0	0	3	3	3	2	KaiC
RsgA_GTPase	PF03193.16	gi|336251917|ref|YP_004585885.1|	-	0.00072	19.5	0.0	0.2	11.5	0.0	2.3	2	0	0	2	2	2	1	RsgA	GTPase
AAA	PF00004.29	gi|336251917|ref|YP_004585885.1|	-	0.00094	19.6	0.0	0.79	10.1	0.0	3.0	3	1	0	3	3	2	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
NB-ARC	PF00931.22	gi|336251917|ref|YP_004585885.1|	-	0.0012	18.1	0.0	0.12	11.5	0.0	2.3	2	0	0	2	2	2	1	NB-ARC	domain
AAA_24	PF13479.6	gi|336251917|ref|YP_004585885.1|	-	0.0012	18.6	0.0	2	8.1	0.0	2.8	3	0	0	3	3	3	2	AAA	domain
MobB	PF03205.14	gi|336251917|ref|YP_004585885.1|	-	0.0014	18.5	0.0	0.43	10.5	0.0	2.4	2	0	0	2	2	2	1	Molybdopterin	guanine	dinucleotide	synthesis	protein	B
RNA_helicase	PF00910.22	gi|336251917|ref|YP_004585885.1|	-	0.0023	18.3	0.0	1.7	9.0	0.0	2.5	2	0	0	2	2	2	1	RNA	helicase
AAA_33	PF13671.6	gi|336251917|ref|YP_004585885.1|	-	0.0032	17.6	0.0	2.7	8.1	0.0	2.3	2	0	0	2	2	2	2	AAA	domain
PhoH	PF02562.16	gi|336251917|ref|YP_004585885.1|	-	0.0034	16.9	0.0	1.6	8.1	0.0	2.4	2	0	0	2	2	2	1	PhoH-like	protein
AAA_5	PF07728.14	gi|336251917|ref|YP_004585885.1|	-	0.011	15.7	0.2	6.9	6.7	0.1	2.7	2	0	0	2	2	2	0	AAA	domain	(dynein-related	subfamily)
MMR_HSR1	PF01926.23	gi|336251917|ref|YP_004585885.1|	-	0.013	15.6	0.2	5.3	7.2	0.0	2.5	2	0	0	2	2	2	0	50S	ribosome-binding	GTPase
AAA_23	PF13476.6	gi|336251917|ref|YP_004585885.1|	-	0.014	15.9	0.0	0.87	10.1	0.0	2.2	2	0	0	2	2	2	0	AAA	domain
Sigma54_activat	PF00158.26	gi|336251917|ref|YP_004585885.1|	-	0.016	14.9	0.0	2.3	7.9	0.0	2.5	2	0	0	2	2	2	0	Sigma-54	interaction	domain
TsaE	PF02367.17	gi|336251917|ref|YP_004585885.1|	-	0.017	15.2	0.0	0.99	9.4	0.0	2.3	2	0	0	2	2	2	0	Threonylcarbamoyl	adenosine	biosynthesis	protein	TsaE
AAA_15	PF13175.6	gi|336251917|ref|YP_004585885.1|	-	0.018	14.8	0.0	13	5.4	0.0	3.0	3	0	0	3	3	3	0	AAA	ATPase	domain
DUF87	PF01935.17	gi|336251917|ref|YP_004585885.1|	-	0.019	15.1	0.0	0.11	12.5	0.0	2.1	2	0	0	2	2	2	0	Helicase	HerA,	central	domain
AAA_7	PF12775.7	gi|336251917|ref|YP_004585885.1|	-	0.043	13.3	0.0	7.6	6.0	0.0	2.5	2	0	0	2	2	2	0	P-loop	containing	dynein	motor	region
MeaB	PF03308.16	gi|336251917|ref|YP_004585885.1|	-	0.044	12.8	0.0	0.56	9.1	0.0	2.1	2	0	0	2	2	2	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
AAA_30	PF13604.6	gi|336251917|ref|YP_004585885.1|	-	0.065	13.0	0.0	2.5	7.8	0.1	2.3	2	0	0	2	2	2	0	AAA	domain
Roc	PF08477.13	gi|336251917|ref|YP_004585885.1|	-	0.067	13.4	0.1	7.5	6.8	0.0	2.3	2	0	0	2	2	2	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
AAA_18	PF13238.6	gi|336251917|ref|YP_004585885.1|	-	0.08	13.5	0.0	2.6	8.6	0.0	2.5	2	0	0	2	2	2	0	AAA	domain
PRK	PF00485.18	gi|336251917|ref|YP_004585885.1|	-	0.095	12.4	1.8	9	6.0	0.0	2.3	2	0	0	2	2	2	0	Phosphoribulokinase	/	Uridine	kinase	family
Pox_A32	PF04665.12	gi|336251917|ref|YP_004585885.1|	-	0.12	11.8	0.0	3.6	7.0	0.0	2.2	2	0	0	2	2	2	0	Poxvirus	A32	protein
TniB	PF05621.11	gi|336251917|ref|YP_004585885.1|	-	0.12	11.7	0.1	22	4.4	0.1	3.1	3	0	0	3	3	3	0	Bacterial	TniB	protein
Zeta_toxin	PF06414.12	gi|336251917|ref|YP_004585885.1|	-	0.2	10.9	0.1	12	5.1	0.1	2.4	2	0	0	2	2	2	0	Zeta	toxin
TssN	PF17555.2	gi|336251918|ref|YP_004585886.1|	-	0.034	13.5	0.7	0.037	13.4	0.7	1.0	1	0	0	1	1	1	0	Type	VI	secretion	system,	TssN
DUF5362	PF17319.2	gi|336251918|ref|YP_004585886.1|	-	0.036	13.9	0.1	0.049	13.5	0.1	1.2	1	0	0	1	1	1	0	Family	of	unknown	function	(DUF5362)
Tetraspanin	PF00335.20	gi|336251918|ref|YP_004585886.1|	-	0.088	12.5	0.4	0.099	12.3	0.4	1.0	1	0	0	1	1	1	0	Tetraspanin	family
BPD_transp_1	PF00528.22	gi|336251919|ref|YP_004585887.1|	-	2.5e-21	76.3	14.3	2.5e-21	76.3	14.3	2.0	1	1	1	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
Transmemb_17	PF09799.9	gi|336251919|ref|YP_004585887.1|	-	0.049	14.2	0.9	0.049	14.2	0.9	2.6	3	1	1	4	4	4	0	Predicted	membrane	protein
BPD_transp_1	PF00528.22	gi|336251920|ref|YP_004585888.1|	-	4.8e-34	117.7	10.8	8.8e-34	116.9	10.8	1.4	1	0	0	1	1	1	1	Binding-protein-dependent	transport	system	inner	membrane	component
SBP_bac_5	PF00496.22	gi|336251921|ref|YP_004585889.1|	-	7.9e-31	107.4	0.2	1.1e-30	106.9	0.2	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
TAT_signal	PF10518.9	gi|336251921|ref|YP_004585889.1|	-	0.46	10.4	5.0	0.95	9.4	5.0	1.6	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
Glyco_hyd_65N_2	PF14498.6	gi|336251922|ref|YP_004585890.1|	-	4.4e-66	223.1	0.0	7.1e-66	222.4	0.0	1.3	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	65,	N-terminal	domain
3-alpha	PF03475.14	gi|336251922|ref|YP_004585890.1|	-	0.14	12.1	1.7	0.6	10.0	0.0	2.7	2	0	0	2	2	2	0	3-alpha	domain
Glyco_hydro_42	PF02449.15	gi|336251923|ref|YP_004585891.1|	-	1.2e-148	495.5	3.7	3.8e-148	493.8	2.9	1.9	2	0	0	2	2	2	1	Beta-galactosidase
Glyco_hydro_42M	PF08532.10	gi|336251923|ref|YP_004585891.1|	-	5.1e-65	218.9	0.1	7.6e-65	218.3	0.1	1.3	1	0	0	1	1	1	1	Beta-galactosidase	trimerisation	domain
Glyco_hydro_14	PF01373.17	gi|336251923|ref|YP_004585891.1|	-	1.7e-06	27.3	0.1	6.4e-05	22.1	0.0	2.1	2	0	0	2	2	2	1	Glycosyl	hydrolase	family	14
Cellulase	PF00150.18	gi|336251923|ref|YP_004585891.1|	-	0.0004	19.9	0.0	0.0015	18.0	0.0	1.8	2	0	0	2	2	2	1	Cellulase	(glycosyl	hydrolase	family	5)
Glyco_hydro_42C	PF08533.10	gi|336251923|ref|YP_004585891.1|	-	0.00083	19.0	0.0	0.0022	17.7	0.0	1.7	1	0	0	1	1	1	1	Beta-galactosidase	C-terminal	domain
Glyco_hydro_35	PF01301.19	gi|336251923|ref|YP_004585891.1|	-	0.0026	17.4	0.0	0.0052	16.4	0.0	1.5	1	0	0	1	1	1	1	Glycosyl	hydrolases	family	35
DUF4350	PF14258.6	gi|336251923|ref|YP_004585891.1|	-	0.039	14.4	0.3	0.28	11.7	0.1	2.6	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF4350)
SfsA	PF03749.13	gi|336251925|ref|YP_004585893.1|	-	1.1e-41	142.0	0.0	1.3e-41	141.7	0.0	1.1	1	0	0	1	1	1	1	Sugar	fermentation	stimulation	protein	RE	domain
SfsA_N	PF17746.1	gi|336251925|ref|YP_004585893.1|	-	3.6e-17	62.3	0.0	7.3e-17	61.3	0.0	1.5	1	0	0	1	1	1	1	SfsA	N-terminal	OB	domain
PMSR	PF01625.21	gi|336251926|ref|YP_004585894.1|	-	1.1e-30	106.9	0.1	1.4e-30	106.5	0.1	1.1	1	0	0	1	1	1	1	Peptide	methionine	sulfoxide	reductase
Asparaginase	PF00710.20	gi|336251927|ref|YP_004585895.1|	-	2e-54	184.0	0.1	4e-54	183.1	0.0	1.5	2	0	0	2	2	2	1	Asparaginase,	N-terminal
Asparaginase_C	PF17763.1	gi|336251927|ref|YP_004585895.1|	-	1.4e-23	83.3	0.0	3.5e-22	78.8	0.0	2.2	2	0	0	2	2	2	1	Glutaminase/Asparaginase	C-terminal	domain
Peripla_BP_4	PF13407.6	gi|336251927|ref|YP_004585895.1|	-	8.8e-07	28.7	0.7	0.024	14.2	0.1	2.2	2	0	0	2	2	2	2	Periplasmic	binding	protein	domain
Zn-ribbon_8	PF09723.10	gi|336251929|ref|YP_004585897.1|	-	0.039	14.1	0.4	0.13	12.4	0.3	1.8	2	0	0	2	2	2	0	Zinc	ribbon	domain
zf_C2H2_10	PF18414.1	gi|336251929|ref|YP_004585897.1|	-	0.11	12.0	1.6	0.2	11.2	1.6	1.5	1	1	0	1	1	1	0	C2H2	type	zinc-finger
HypA	PF01155.19	gi|336251930|ref|YP_004585898.1|	-	6.3e-05	23.0	0.3	6.5e-05	22.9	0.3	1.0	1	0	0	1	1	1	1	Hydrogenase/urease	nickel	incorporation,	metallochaperone,	hypA
zinc_ribbon_15	PF17032.5	gi|336251930|ref|YP_004585898.1|	-	0.00017	22.3	0.2	0.00018	22.2	0.2	1.1	1	0	0	1	1	1	1	zinc-ribbon	family
DZR	PF12773.7	gi|336251930|ref|YP_004585898.1|	-	0.00032	20.7	0.2	0.00035	20.5	0.2	1.1	1	0	0	1	1	1	1	Double	zinc	ribbon
zinc_ribbon_2	PF13240.6	gi|336251930|ref|YP_004585898.1|	-	0.00047	19.8	1.9	0.00064	19.3	1.9	1.2	1	0	0	1	1	1	1	zinc-ribbon	domain
Ogr_Delta	PF04606.12	gi|336251930|ref|YP_004585898.1|	-	0.00093	19.1	0.4	0.43	10.6	0.1	2.1	2	0	0	2	2	2	2	Ogr/Delta-like	zinc	finger
Zn_Tnp_IS1595	PF12760.7	gi|336251930|ref|YP_004585898.1|	-	0.0014	18.6	0.2	0.89	9.6	0.0	2.1	2	0	0	2	2	2	2	Transposase	zinc-ribbon	domain
Zn-ribbon_8	PF09723.10	gi|336251930|ref|YP_004585898.1|	-	0.0049	16.9	6.2	0.013	15.6	6.2	1.7	1	1	0	1	1	1	1	Zinc	ribbon	domain
NRDD	PF13597.6	gi|336251930|ref|YP_004585898.1|	-	0.0051	15.7	0.1	0.0051	15.7	0.1	1.0	1	0	0	1	1	1	1	Anaerobic	ribonucleoside-triphosphate	reductase
UPF0547	PF10571.9	gi|336251930|ref|YP_004585898.1|	-	0.0056	16.7	1.9	0.0099	15.9	1.9	1.5	1	1	0	1	1	1	1	Uncharacterised	protein	family	UPF0547
zf-ribbon_3	PF13248.6	gi|336251930|ref|YP_004585898.1|	-	0.0058	16.0	1.4	0.0088	15.4	1.4	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
DUF1272	PF06906.11	gi|336251930|ref|YP_004585898.1|	-	0.0086	16.1	0.7	0.01	15.9	0.7	1.1	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF1272)
Zn_ribbon_SprT	PF17283.2	gi|336251930|ref|YP_004585898.1|	-	0.012	15.5	0.9	1.8	8.5	0.1	2.1	2	0	0	2	2	2	0	SprT-like	zinc	ribbon	domain
zinc-ribbons_6	PF07191.12	gi|336251930|ref|YP_004585898.1|	-	0.014	15.4	0.4	0.016	15.2	0.4	1.1	1	0	0	1	1	1	0	zinc-ribbons
RecR	PF02132.15	gi|336251930|ref|YP_004585898.1|	-	0.014	15.0	0.5	0.018	14.6	0.5	1.3	1	0	0	1	1	1	0	RecR	protein
zf_UBZ	PF18439.1	gi|336251930|ref|YP_004585898.1|	-	0.021	14.4	3.6	0.82	9.3	0.2	2.1	1	1	1	2	2	2	0	Ubiquitin-Binding	Zinc	Finger
Lar_restr_allev	PF14354.6	gi|336251930|ref|YP_004585898.1|	-	0.031	14.6	2.1	1.1	9.7	0.1	2.1	1	1	1	2	2	2	0	Restriction	alleviation	protein	Lar
YhfH	PF14149.6	gi|336251930|ref|YP_004585898.1|	-	0.055	13.5	2.7	3.6	7.6	0.1	2.1	1	1	1	2	2	2	0	YhfH-like	protein
zinc_ribbon_9	PF14369.6	gi|336251930|ref|YP_004585898.1|	-	0.062	13.6	4.3	0.11	12.7	4.3	1.5	1	1	0	1	1	1	0	zinc-ribbon
NOB1_Zn_bind	PF08772.11	gi|336251930|ref|YP_004585898.1|	-	0.064	13.4	0.3	0.073	13.2	0.3	1.2	1	0	0	1	1	1	0	Nin	one	binding	(NOB1)	Zn-ribbon	like
OrfB_Zn_ribbon	PF07282.11	gi|336251930|ref|YP_004585898.1|	-	0.066	13.2	3.5	0.34	10.9	1.1	2.0	1	1	1	2	2	2	0	Putative	transposase	DNA-binding	domain
zf-IS66	PF13005.7	gi|336251930|ref|YP_004585898.1|	-	0.078	13.4	3.4	2.6	8.5	0.1	2.2	2	0	0	2	2	2	0	zinc-finger	binding	domain	of	transposase	IS66
DNA_ligase_ZBD	PF03119.16	gi|336251930|ref|YP_004585898.1|	-	0.088	12.9	0.3	0.088	12.9	0.3	2.3	2	1	0	2	2	2	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
DUF35_N	PF12172.8	gi|336251930|ref|YP_004585898.1|	-	0.099	12.5	2.3	0.19	11.6	2.3	1.5	1	1	0	1	1	1	0	Rubredoxin-like	zinc	ribbon	domain	(DUF35_N)
Rubredoxin_2	PF18073.1	gi|336251930|ref|YP_004585898.1|	-	0.17	11.6	4.9	2.5	7.9	5.1	2.0	1	1	0	1	1	1	0	Rubredoxin	metal	binding	domain
zf-Mss51	PF13824.6	gi|336251930|ref|YP_004585898.1|	-	0.36	11.0	3.7	0.87	9.7	0.1	2.1	1	1	1	2	2	2	0	Zinc-finger	of	mitochondrial	splicing	suppressor	51
RNA_POL_M_15KD	PF02150.16	gi|336251930|ref|YP_004585898.1|	-	0.48	10.3	5.2	2	8.4	0.7	2.2	1	1	1	2	2	2	0	RNA	polymerases	M/15	Kd	subunit
zf-C2H2_3	PF13878.6	gi|336251930|ref|YP_004585898.1|	-	0.75	9.7	5.0	1.7	8.6	0.3	2.1	1	1	1	2	2	2	0	zinc-finger	of	acetyl-transferase	ESCO
Flavodoxin_5	PF12724.7	gi|336251931|ref|YP_004585899.1|	-	4.2e-36	124.4	0.0	5.3e-36	124.0	0.0	1.1	1	0	0	1	1	1	1	Flavodoxin	domain
Flavodoxin_1	PF00258.25	gi|336251931|ref|YP_004585899.1|	-	4.2e-05	23.8	0.1	9.7e-05	22.6	0.1	1.7	1	1	1	2	2	2	1	Flavodoxin
Flavodoxin_3	PF12641.7	gi|336251931|ref|YP_004585899.1|	-	0.0011	18.7	0.0	0.0036	17.0	0.0	1.8	1	1	0	2	2	2	1	Flavodoxin	domain
B12-binding	PF02310.19	gi|336251931|ref|YP_004585899.1|	-	0.057	13.5	0.0	0.15	12.1	0.0	1.8	1	0	0	1	1	1	0	B12	binding	domain
DUF3834	PF12916.7	gi|336251931|ref|YP_004585899.1|	-	0.078	12.2	0.0	0.11	11.7	0.0	1.1	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3834)
TrmB	PF01978.19	gi|336251932|ref|YP_004585900.1|	-	1.4e-12	47.3	0.0	2.2e-12	46.7	0.0	1.4	1	1	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_IclR	PF09339.10	gi|336251932|ref|YP_004585900.1|	-	3.9e-07	29.8	0.0	7.4e-07	28.9	0.0	1.4	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
HTH_11	PF08279.12	gi|336251932|ref|YP_004585900.1|	-	2.9e-06	27.1	0.0	1.3e-05	25.0	0.0	1.9	2	0	0	2	2	2	1	HTH	domain
MarR	PF01047.22	gi|336251932|ref|YP_004585900.1|	-	4.7e-05	23.2	0.0	0.0002	21.2	0.0	1.9	2	0	0	2	2	2	1	MarR	family
MarR_2	PF12802.7	gi|336251932|ref|YP_004585900.1|	-	9.9e-05	22.2	0.1	0.00021	21.1	0.0	1.5	2	0	0	2	2	1	1	MarR	family
HTH_24	PF13412.6	gi|336251932|ref|YP_004585900.1|	-	0.00012	21.6	0.0	0.00019	20.9	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
Penicillinase_R	PF03965.16	gi|336251932|ref|YP_004585900.1|	-	0.00022	21.5	0.0	0.00028	21.2	0.0	1.2	1	0	0	1	1	1	1	Penicillinase	repressor
DUF4777	PF16007.5	gi|336251932|ref|YP_004585900.1|	-	0.00091	19.4	0.1	0.0059	16.8	0.1	2.2	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF4777)
HTH_20	PF12840.7	gi|336251932|ref|YP_004585900.1|	-	0.00092	19.2	0.0	0.0018	18.3	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
Fe_dep_repress	PF01325.19	gi|336251932|ref|YP_004585900.1|	-	0.0055	16.9	0.0	0.051	13.8	0.0	2.2	2	0	0	2	2	2	1	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HTH_38	PF13936.6	gi|336251932|ref|YP_004585900.1|	-	0.016	14.9	0.0	0.082	12.7	0.0	2.0	2	0	0	2	2	2	0	Helix-turn-helix	domain
Dimerisation2	PF16864.5	gi|336251932|ref|YP_004585900.1|	-	0.02	14.9	0.0	0.03	14.3	0.0	1.3	1	0	0	1	1	1	0	Dimerisation	domain
HTH_5	PF01022.20	gi|336251932|ref|YP_004585900.1|	-	0.023	14.6	0.0	0.036	13.9	0.0	1.3	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_23	PF13384.6	gi|336251932|ref|YP_004585900.1|	-	0.025	14.4	0.0	0.067	13.0	0.0	1.7	2	0	0	2	2	2	0	Homeodomain-like	domain
HTH_Crp_2	PF13545.6	gi|336251932|ref|YP_004585900.1|	-	0.026	14.5	0.0	0.05	13.6	0.0	1.6	1	0	0	1	1	1	0	Crp-like	helix-turn-helix	domain
GntR	PF00392.21	gi|336251932|ref|YP_004585900.1|	-	0.027	14.1	0.0	0.12	12.0	0.0	1.9	2	0	0	2	2	2	0	Bacterial	regulatory	proteins,	gntR	family
HTH_27	PF13463.6	gi|336251932|ref|YP_004585900.1|	-	0.039	14.4	0.0	0.14	12.7	0.0	1.9	1	1	1	2	2	2	0	Winged	helix	DNA-binding	domain
HTH_12	PF08461.10	gi|336251932|ref|YP_004585900.1|	-	0.051	13.5	0.1	0.21	11.6	0.0	2.0	2	0	0	2	2	2	0	Ribonuclease	R	winged-helix	domain
DUF4364	PF14277.6	gi|336251932|ref|YP_004585900.1|	-	0.058	13.1	0.0	0.075	12.8	0.0	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
Dimerisation	PF08100.11	gi|336251932|ref|YP_004585900.1|	-	0.078	13.0	0.0	0.28	11.2	0.0	1.8	2	0	0	2	2	2	0	Dimerisation	domain
RepB	PF07506.11	gi|336251932|ref|YP_004585900.1|	-	0.096	12.8	0.0	0.16	12.1	0.0	1.3	1	0	0	1	1	1	0	RepB	plasmid	partitioning	protein
Sulf_transp	PF04143.14	gi|336251933|ref|YP_004585901.1|	-	2.7e-06	27.2	17.8	7.7e-06	25.7	7.3	2.1	1	1	1	2	2	2	2	Sulphur	transport
Sulf_transp	PF04143.14	gi|336251934|ref|YP_004585902.1|	-	8.2e-14	51.9	14.3	1.1e-13	51.5	14.3	1.0	1	0	0	1	1	1	1	Sulphur	transport
Lactamase_B	PF00753.27	gi|336251935|ref|YP_004585903.1|	-	1.1e-19	71.3	8.2	1.8e-19	70.6	8.2	1.4	1	0	0	1	1	1	1	Metallo-beta-lactamase	superfamily
Rhodanese	PF00581.20	gi|336251935|ref|YP_004585903.1|	-	4.2e-10	40.1	0.0	7.9e-10	39.2	0.0	1.5	1	0	0	1	1	1	1	Rhodanese-like	domain
Lactamase_B_2	PF12706.7	gi|336251935|ref|YP_004585903.1|	-	0.001	18.6	1.6	0.0025	17.4	1.6	1.6	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
Lactamase_B_3	PF13483.6	gi|336251935|ref|YP_004585903.1|	-	0.0061	16.5	0.1	0.012	15.5	0.1	1.4	1	0	0	1	1	1	1	Beta-lactamase	superfamily	domain
PH_8	PF15409.6	gi|336251935|ref|YP_004585903.1|	-	0.098	13.0	0.0	0.19	12.1	0.0	1.4	1	0	0	1	1	1	0	Pleckstrin	homology	domain
TusA	PF01206.17	gi|336251936|ref|YP_004585904.1|	-	2.8e-20	71.9	0.0	3.2e-20	71.7	0.0	1.0	1	0	0	1	1	1	1	Sulfurtransferase	TusA
DrsE_2	PF13686.6	gi|336251937|ref|YP_004585905.1|	-	8.7e-50	168.6	0.0	1.1e-49	168.3	0.0	1.1	1	0	0	1	1	1	1	DsrE/DsrF/DrsH-like	family
DrsE	PF02635.15	gi|336251937|ref|YP_004585905.1|	-	7.8e-08	32.7	0.0	4.6e-07	30.2	0.0	2.0	1	1	0	1	1	1	1	DsrE/DsrF-like	family
Sugarporin_N	PF11471.8	gi|336251937|ref|YP_004585905.1|	-	0.002	18.0	3.7	0.0046	16.9	2.3	2.2	2	0	0	2	2	2	1	Maltoporin	periplasmic	N-terminal	extension
ABC_tran_CTD	PF16326.5	gi|336251937|ref|YP_004585905.1|	-	0.064	13.5	1.6	0.099	12.9	0.6	1.8	2	0	0	2	2	2	0	ABC	transporter	C-terminal	domain
HalX	PF08663.10	gi|336251937|ref|YP_004585905.1|	-	0.19	12.1	2.9	0.44	10.9	2.9	1.6	1	0	0	1	1	1	0	HalX	domain
DUF2270	PF10028.9	gi|336251938|ref|YP_004585906.1|	-	2.5e-74	248.9	5.4	2.9e-74	248.6	5.4	1.0	1	0	0	1	1	1	1	Predicted	integral	membrane	protein	(DUF2270)
Abhydrolase_6	PF12697.7	gi|336251939|ref|YP_004585907.1|	-	3.4e-23	83.4	1.1	3.9e-23	83.2	1.1	1.0	1	0	0	1	1	1	1	Alpha/beta	hydrolase	family
Abhydrolase_1	PF00561.20	gi|336251939|ref|YP_004585907.1|	-	9.5e-22	77.9	0.0	1.8e-15	57.3	0.0	2.1	2	0	0	2	2	2	2	alpha/beta	hydrolase	fold
Hydrolase_4	PF12146.8	gi|336251939|ref|YP_004585907.1|	-	1.4e-12	47.4	0.0	1.2e-08	34.6	0.1	2.2	2	0	0	2	2	2	2	Serine	aminopeptidase,	S33
Thioesterase	PF00975.20	gi|336251939|ref|YP_004585907.1|	-	0.00092	19.4	0.0	0.0018	18.4	0.0	1.4	2	0	0	2	2	2	1	Thioesterase	domain
PGAP1	PF07819.13	gi|336251939|ref|YP_004585907.1|	-	0.055	13.2	0.0	1.3	8.7	0.0	2.1	1	1	1	2	2	2	0	PGAP1-like	protein
HATPase_c	PF02518.26	gi|336251940|ref|YP_004585908.1|	-	1.9e-28	99.2	0.1	5.3e-28	97.8	0.0	1.8	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_4	PF08448.10	gi|336251940|ref|YP_004585908.1|	-	6.9e-26	90.7	5.7	2.9e-12	46.8	0.0	4.0	3	1	0	3	3	3	3	PAS	fold
PAS_3	PF08447.12	gi|336251940|ref|YP_004585908.1|	-	2.3e-22	79.1	3.3	1.5e-17	63.6	0.5	3.6	4	0	0	4	4	3	2	PAS	fold
PAS_9	PF13426.7	gi|336251940|ref|YP_004585908.1|	-	6.5e-21	74.5	0.1	4.3e-09	36.6	0.0	3.7	3	0	0	3	3	3	3	PAS	domain
PAS	PF00989.25	gi|336251940|ref|YP_004585908.1|	-	5.3e-15	55.4	0.7	1e-06	28.7	0.0	3.7	3	0	0	3	3	3	3	PAS	fold
PAS_8	PF13188.7	gi|336251940|ref|YP_004585908.1|	-	8.9e-14	51.1	0.3	2.1e-09	37.2	0.1	3.8	3	0	0	3	3	3	2	PAS	domain
HisKA	PF00512.25	gi|336251940|ref|YP_004585908.1|	-	2.7e-12	46.5	0.4	1.9e-11	43.8	0.1	2.8	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
GAF	PF01590.26	gi|336251940|ref|YP_004585908.1|	-	3.7e-12	47.0	0.1	1e-11	45.6	0.1	1.8	1	0	0	1	1	1	1	GAF	domain
GAF_2	PF13185.6	gi|336251940|ref|YP_004585908.1|	-	1.9e-11	44.4	0.6	4.5e-11	43.2	0.6	1.7	1	0	0	1	1	1	1	GAF	domain
GAF_3	PF13492.6	gi|336251940|ref|YP_004585908.1|	-	8.4e-10	39.1	0.1	1.7e-09	38.1	0.1	1.5	1	0	0	1	1	1	1	GAF	domain
HATPase_c_5	PF14501.6	gi|336251940|ref|YP_004585908.1|	-	9.3e-05	22.3	0.0	0.0005	19.9	0.0	2.2	3	0	0	3	3	3	1	GHKL	domain
HATPase_c_2	PF13581.6	gi|336251940|ref|YP_004585908.1|	-	0.0012	18.8	0.0	0.0037	17.2	0.0	1.9	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
HATPase_c_3	PF13589.6	gi|336251940|ref|YP_004585908.1|	-	0.026	14.3	0.0	0.059	13.2	0.0	1.5	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
DUF3653	PF12375.8	gi|336251940|ref|YP_004585908.1|	-	0.099	12.8	0.3	1.1	9.4	0.0	2.7	3	0	0	3	3	3	0	Phage	protein
Beta_helix	PF13229.6	gi|336251941|ref|YP_004585909.1|	-	0.15	11.9	6.8	0.2	11.5	5.2	1.9	1	1	1	2	2	2	0	Right	handed	beta	helix	region
Glyco_hydro_4C	PF11975.8	gi|336251942|ref|YP_004585910.1|	-	9.3e-62	208.8	0.0	1.3e-61	208.4	0.0	1.2	1	0	0	1	1	1	1	Family	4	glycosyl	hydrolase	C-terminal	domain
Glyco_hydro_4	PF02056.16	gi|336251942|ref|YP_004585910.1|	-	3.2e-57	193.0	0.0	4.4e-57	192.6	0.0	1.2	1	0	0	1	1	1	1	Family	4	glycosyl	hydrolase
ADH_N	PF08240.12	gi|336251943|ref|YP_004585911.1|	-	2.3e-30	104.7	0.4	5.6e-30	103.4	0.5	1.7	1	0	0	1	1	1	1	Alcohol	dehydrogenase	GroES-like	domain
ADH_zinc_N	PF00107.26	gi|336251943|ref|YP_004585911.1|	-	9.7e-22	77.3	0.0	2e-21	76.3	0.0	1.5	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
Glu_dehyd_C	PF16912.5	gi|336251943|ref|YP_004585911.1|	-	1.8e-12	47.2	0.0	3.1e-12	46.4	0.0	1.4	1	0	0	1	1	1	1	Glucose	dehydrogenase	C-terminus
ADH_zinc_N_2	PF13602.6	gi|336251943|ref|YP_004585911.1|	-	1.8e-07	32.2	0.0	4.4e-07	31.0	0.0	1.7	1	0	0	1	1	1	1	Zinc-binding	dehydrogenase
adh_short_C2	PF13561.6	gi|336251943|ref|YP_004585911.1|	-	0.14	11.7	0.1	0.36	10.3	0.0	1.7	2	0	0	2	2	2	0	Enoyl-(Acyl	carrier	protein)	reductase
ELFV_dehydrog	PF00208.21	gi|336251943|ref|YP_004585911.1|	-	0.18	11.5	0.1	2.3	7.9	0.1	2.1	1	1	1	2	2	2	0	Glutamate/Leucine/Phenylalanine/Valine	dehydrogenase
Alpha-L-AF_C	PF06964.12	gi|336251944|ref|YP_004585912.1|	-	1.2e-27	97.1	0.2	1.8e-27	96.5	0.2	1.2	1	0	0	1	1	1	1	Alpha-L-arabinofuranosidase	C-terminal	domain
SCP_3	PF17844.1	gi|336251944|ref|YP_004585912.1|	-	0.14	11.9	0.0	1.9	8.3	0.0	2.4	2	0	0	2	2	2	0	Bacterial	SCP	ortholog
SBP_bac_5	PF00496.22	gi|336251945|ref|YP_004585913.1|	-	1.1e-33	116.8	1.1	1.6e-33	116.2	1.1	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
BPD_transp_1	PF00528.22	gi|336251946|ref|YP_004585914.1|	-	3.3e-37	128.0	11.4	3.3e-37	128.0	11.4	1.9	3	0	0	3	3	3	1	Binding-protein-dependent	transport	system	inner	membrane	component
BPD_transp_1	PF00528.22	gi|336251947|ref|YP_004585915.1|	-	1.2e-22	80.5	13.3	1.2e-22	80.5	13.3	2.0	2	1	0	2	2	2	1	Binding-protein-dependent	transport	system	inner	membrane	component
ABC_tran	PF00005.27	gi|336251948|ref|YP_004585916.1|	-	7.9e-23	81.5	0.0	1.3e-22	80.8	0.0	1.4	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|336251948|ref|YP_004585916.1|	-	2.8e-17	63.0	0.2	5.7e-17	62.0	0.2	1.6	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|336251948|ref|YP_004585916.1|	-	1.1e-10	41.8	0.6	7e-09	35.9	0.8	2.2	2	0	0	2	2	2	1	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
SMC_N	PF02463.19	gi|336251948|ref|YP_004585916.1|	-	7.5e-05	22.3	0.8	0.00098	18.6	0.8	2.1	1	1	0	1	1	1	1	RecF/RecN/SMC	N	terminal	domain
AAA_22	PF13401.6	gi|336251948|ref|YP_004585916.1|	-	0.0022	18.3	0.8	0.057	13.7	0.8	2.1	1	1	0	1	1	1	1	AAA	domain
ABC_ATPase	PF09818.9	gi|336251948|ref|YP_004585916.1|	-	0.0038	16.1	0.1	0.02	13.7	0.1	2.0	2	1	0	2	2	2	1	Predicted	ATPase	of	the	ABC	class
AAA_25	PF13481.6	gi|336251948|ref|YP_004585916.1|	-	0.0053	16.4	0.0	0.066	12.8	0.0	2.1	2	0	0	2	2	2	1	AAA	domain
DUF87	PF01935.17	gi|336251948|ref|YP_004585916.1|	-	0.015	15.4	0.0	0.037	14.1	0.0	1.6	1	0	0	1	1	1	0	Helicase	HerA,	central	domain
AAA_15	PF13175.6	gi|336251948|ref|YP_004585916.1|	-	0.019	14.7	0.2	0.91	9.2	0.1	2.1	2	0	0	2	2	2	0	AAA	ATPase	domain
AAA_29	PF13555.6	gi|336251948|ref|YP_004585916.1|	-	0.037	13.8	0.1	0.075	12.8	0.1	1.5	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
MeaB	PF03308.16	gi|336251948|ref|YP_004585916.1|	-	0.048	12.6	0.0	0.088	11.8	0.0	1.3	1	0	0	1	1	1	0	Methylmalonyl	Co-A	mutase-associated	GTPase	MeaB
AAA_16	PF13191.6	gi|336251948|ref|YP_004585916.1|	-	0.052	13.9	0.1	0.085	13.2	0.1	1.6	1	1	0	1	1	1	0	AAA	ATPase	domain
IstB_IS21	PF01695.17	gi|336251948|ref|YP_004585916.1|	-	0.068	12.9	0.1	0.29	10.9	0.0	1.9	2	0	0	2	2	2	0	IstB-like	ATP	binding	protein
NACHT	PF05729.12	gi|336251948|ref|YP_004585916.1|	-	0.13	12.1	0.0	0.25	11.3	0.0	1.4	1	0	0	1	1	1	0	NACHT	domain
AAA_24	PF13479.6	gi|336251948|ref|YP_004585916.1|	-	0.24	11.1	0.2	1.4	8.6	0.0	2.0	2	0	0	2	2	2	0	AAA	domain
ABC_tran	PF00005.27	gi|336251949|ref|YP_004585917.1|	-	1.2e-30	106.8	0.0	1.7e-30	106.3	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
oligo_HPY	PF08352.12	gi|336251949|ref|YP_004585917.1|	-	4.2e-17	62.4	0.1	7.8e-17	61.6	0.1	1.5	1	0	0	1	1	1	1	Oligopeptide/dipeptide	transporter,	C-terminal	region
AAA_21	PF13304.6	gi|336251949|ref|YP_004585917.1|	-	0.0037	17.1	0.4	1.5	8.6	0.1	2.2	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
AAA_22	PF13401.6	gi|336251949|ref|YP_004585917.1|	-	0.011	16.1	0.7	0.23	11.7	0.1	2.2	2	0	0	2	2	2	0	AAA	domain
ATPase	PF06745.13	gi|336251949|ref|YP_004585917.1|	-	0.015	14.6	0.0	0.026	13.9	0.0	1.3	1	0	0	1	1	1	0	KaiC
NB-ARC	PF00931.22	gi|336251949|ref|YP_004585917.1|	-	0.025	13.8	0.0	0.044	13.0	0.0	1.3	1	0	0	1	1	1	0	NB-ARC	domain
AAA_16	PF13191.6	gi|336251949|ref|YP_004585917.1|	-	0.03	14.7	0.0	0.054	13.9	0.0	1.5	1	1	0	1	1	1	0	AAA	ATPase	domain
RsgA_GTPase	PF03193.16	gi|336251949|ref|YP_004585917.1|	-	0.076	12.9	0.0	0.12	12.2	0.0	1.3	1	0	0	1	1	1	0	RsgA	GTPase
AAA_25	PF13481.6	gi|336251949|ref|YP_004585917.1|	-	0.077	12.6	0.0	0.16	11.5	0.0	1.4	1	0	0	1	1	1	0	AAA	domain
AAA_29	PF13555.6	gi|336251949|ref|YP_004585917.1|	-	0.11	12.3	0.0	0.21	11.4	0.0	1.4	1	0	0	1	1	1	0	P-loop	containing	region	of	AAA	domain
NACHT	PF05729.12	gi|336251949|ref|YP_004585917.1|	-	0.2	11.5	0.2	0.36	10.7	0.2	1.4	1	0	0	1	1	1	0	NACHT	domain
PhoH	PF02562.16	gi|336251949|ref|YP_004585917.1|	-	0.21	11.0	0.1	0.36	10.3	0.1	1.3	1	0	0	1	1	1	0	PhoH-like	protein
DUF4231	PF14015.6	gi|336251950|ref|YP_004585918.1|	-	0.058	13.9	0.6	0.065	13.7	0.6	1.0	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF4231)
Alpha-L-AF_C	PF06964.12	gi|336251951|ref|YP_004585919.1|	-	3.7e-09	36.9	0.0	8.5e-09	35.7	0.0	1.6	2	0	0	2	2	2	1	Alpha-L-arabinofuranosidase	C-terminal	domain
Glyco_hydro_127	PF07944.12	gi|336251952|ref|YP_004585920.1|	-	2.1e-173	577.6	0.1	2.3e-173	577.4	0.1	1.0	1	0	0	1	1	1	1	Beta-L-arabinofuranosidase,	GH127
Glyco_hydro_76	PF03663.14	gi|336251952|ref|YP_004585920.1|	-	0.12	11.9	1.8	2	7.9	0.1	2.9	2	1	1	3	3	3	0	Glycosyl	hydrolase	family	76
IclR	PF01614.18	gi|336251953|ref|YP_004585921.1|	-	8.2e-31	106.5	0.0	1.2e-30	106.0	0.0	1.2	1	0	0	1	1	1	1	Bacterial	transcriptional	regulator
HTH_IclR	PF09339.10	gi|336251953|ref|YP_004585921.1|	-	4.9e-08	32.6	0.0	1.4e-07	31.2	0.0	1.8	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
HTH_27	PF13463.6	gi|336251953|ref|YP_004585921.1|	-	0.00025	21.5	0.2	0.00067	20.1	0.0	1.8	2	0	0	2	2	1	1	Winged	helix	DNA-binding	domain
HTH_45	PF14947.6	gi|336251953|ref|YP_004585921.1|	-	0.00042	20.2	0.0	0.00081	19.3	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix
TrmB	PF01978.19	gi|336251953|ref|YP_004585921.1|	-	0.00065	19.5	0.0	0.0016	18.3	0.0	1.6	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
MarR	PF01047.22	gi|336251953|ref|YP_004585921.1|	-	0.001	18.9	0.0	0.002	18.0	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_11	PF08279.12	gi|336251953|ref|YP_004585921.1|	-	0.0029	17.5	0.0	0.0084	16.0	0.0	1.8	2	0	0	2	2	2	1	HTH	domain
HTH_24	PF13412.6	gi|336251953|ref|YP_004585921.1|	-	0.0042	16.6	0.0	0.0074	15.8	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_23	PF13384.6	gi|336251953|ref|YP_004585921.1|	-	0.0067	16.2	0.0	0.015	15.1	0.0	1.6	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_20	PF12840.7	gi|336251953|ref|YP_004585921.1|	-	0.0088	16.1	0.0	0.019	15.0	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_5	PF01022.20	gi|336251953|ref|YP_004585921.1|	-	0.029	14.2	0.0	0.064	13.1	0.0	1.6	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_Tnp_1_2	PF13022.6	gi|336251953|ref|YP_004585921.1|	-	0.058	13.5	0.0	0.1	12.8	0.0	1.3	1	0	0	1	1	1	0	Helix-turn-helix	of	insertion	element	transposase
MarR_2	PF12802.7	gi|336251953|ref|YP_004585921.1|	-	0.12	12.3	0.0	0.26	11.2	0.0	1.6	1	0	0	1	1	1	0	MarR	family
Cache_3-Cache_2	PF17201.4	gi|336251953|ref|YP_004585921.1|	-	0.16	11.3	0.0	0.24	10.6	0.0	1.3	1	0	0	1	1	1	0	Cache	3/Cache	2	fusion	domain
Glyco_hydro_2_N	PF02837.18	gi|336251954|ref|YP_004585922.1|	-	1.8e-23	83.3	1.2	7.5e-23	81.3	1.2	2.0	1	1	0	1	1	1	1	Glycosyl	hydrolases	family	2,	sugar	binding	domain
Glyco_hydro_2	PF00703.21	gi|336251954|ref|YP_004585922.1|	-	2e-14	54.2	0.9	6.1e-14	52.6	0.0	2.5	3	0	0	3	3	3	1	Glycosyl	hydrolases	family	2
Glyco_hydro_2_C	PF02836.17	gi|336251954|ref|YP_004585922.1|	-	6.6e-11	41.9	0.0	1.1e-09	37.9	0.0	2.1	1	1	0	1	1	1	1	Glycosyl	hydrolases	family	2,	TIM	barrel	domain
BetaGal_dom4_5	PF13364.6	gi|336251954|ref|YP_004585922.1|	-	2.2e-05	25.0	0.1	5.1e-05	23.8	0.1	1.6	1	0	0	1	1	1	1	Beta-galactosidase	jelly	roll	domain
HTH_IclR	PF09339.10	gi|336251955|ref|YP_004585923.1|	-	7.7e-14	51.2	0.0	2.5e-13	49.6	0.0	1.8	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
IclR	PF01614.18	gi|336251955|ref|YP_004585923.1|	-	1.7e-13	50.5	0.1	1.9e-05	24.5	0.0	2.9	3	0	0	3	3	3	2	Bacterial	transcriptional	regulator
BNR_2	PF13088.6	gi|336251955|ref|YP_004585923.1|	-	2.7e-12	46.6	0.1	4e-07	29.6	0.0	2.6	1	1	2	3	3	3	2	BNR	repeat-like	domain
BNR	PF02012.20	gi|336251955|ref|YP_004585923.1|	-	6.3e-06	25.4	13.2	0.21	11.7	0.9	4.8	3	0	0	3	3	3	3	BNR/Asp-box	repeat
HTH_5	PF01022.20	gi|336251955|ref|YP_004585923.1|	-	4.1e-05	23.3	0.1	9.3e-05	22.2	0.0	1.7	1	1	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
TrmB	PF01978.19	gi|336251955|ref|YP_004585923.1|	-	6.7e-05	22.7	0.0	0.00016	21.5	0.0	1.6	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
Sortilin-Vps10	PF15902.5	gi|336251955|ref|YP_004585923.1|	-	7.4e-05	21.7	1.8	0.02	13.7	0.1	3.0	3	0	0	3	3	3	1	Sortilin,	neurotensin	receptor	3,
MarR	PF01047.22	gi|336251955|ref|YP_004585923.1|	-	0.00011	22.1	0.0	0.00023	21.0	0.0	1.5	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|336251955|ref|YP_004585923.1|	-	0.00019	20.9	0.0	0.00035	20.1	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
HTH_11	PF08279.12	gi|336251955|ref|YP_004585923.1|	-	0.0081	16.1	0.0	0.017	15.1	0.0	1.5	1	0	0	1	1	1	1	HTH	domain
MarR_2	PF12802.7	gi|336251955|ref|YP_004585923.1|	-	0.014	15.2	0.0	0.032	14.1	0.0	1.6	1	0	0	1	1	1	0	MarR	family
Glyco_hydro_43	PF04616.14	gi|336251955|ref|YP_004585923.1|	-	0.022	14.1	0.1	0.12	11.7	0.0	2.1	2	0	0	2	2	2	0	Glycosyl	hydrolases	family	43
HTH_7	PF02796.15	gi|336251955|ref|YP_004585923.1|	-	0.026	14.6	0.1	0.057	13.5	0.1	1.6	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	resolvase
Rrf2	PF02082.20	gi|336251955|ref|YP_004585923.1|	-	0.036	14.4	0.0	0.068	13.5	0.0	1.4	1	0	0	1	1	1	0	Transcriptional	regulator
Fe_dep_repress	PF01325.19	gi|336251955|ref|YP_004585923.1|	-	0.038	14.2	0.1	0.09	13.0	0.1	1.6	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
PadR	PF03551.14	gi|336251955|ref|YP_004585923.1|	-	0.053	13.5	0.1	5.4	7.0	0.1	3.0	3	0	0	3	3	2	0	Transcriptional	regulator	PadR-like	family
B-block_TFIIIC	PF04182.12	gi|336251955|ref|YP_004585923.1|	-	0.084	13.0	0.0	0.18	12.0	0.0	1.6	1	0	0	1	1	1	0	B-block	binding	subunit	of	TFIIIC
HTH_45	PF14947.6	gi|336251955|ref|YP_004585923.1|	-	0.1	12.6	0.0	0.25	11.4	0.0	1.6	1	0	0	1	1	1	0	Winged	helix-turn-helix
HTH_34	PF13601.6	gi|336251955|ref|YP_004585923.1|	-	0.14	12.3	0.0	0.29	11.3	0.0	1.5	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_36	PF13730.6	gi|336251955|ref|YP_004585923.1|	-	0.2	11.7	0.1	0.93	9.5	0.0	2.0	1	1	0	2	2	2	0	Helix-turn-helix	domain
HTH_Mga	PF08280.11	gi|336251955|ref|YP_004585923.1|	-	0.24	11.5	0.0	0.44	10.6	0.0	1.3	1	0	0	1	1	1	0	M	protein	trans-acting	positive	regulator	(MGA)	HTH	domain
PAS_4	PF08448.10	gi|336251957|ref|YP_004585925.1|	-	3.3e-71	236.5	21.8	1.4e-14	54.3	0.1	6.6	6	0	0	6	6	6	6	PAS	fold
PAS_9	PF13426.7	gi|336251957|ref|YP_004585925.1|	-	3.7e-63	210.3	1.2	1.4e-16	60.7	0.0	6.8	6	0	0	6	6	6	6	PAS	domain
PAS	PF00989.25	gi|336251957|ref|YP_004585925.1|	-	2.5e-53	178.9	3.4	1.1e-11	44.8	0.0	7.9	6	2	0	6	6	6	6	PAS	fold
HATPase_c	PF02518.26	gi|336251957|ref|YP_004585925.1|	-	9e-30	103.5	0.0	2.9e-29	101.9	0.0	2.0	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_3	PF08447.12	gi|336251957|ref|YP_004585925.1|	-	1e-28	99.4	4.6	5.6e-07	29.8	0.0	7.7	7	0	0	7	7	7	5	PAS	fold
PAS_8	PF13188.7	gi|336251957|ref|YP_004585925.1|	-	1.5e-28	98.3	5.9	6.5e-06	26.0	0.0	7.0	6	0	0	6	6	6	6	PAS	domain
PAS_7	PF12860.7	gi|336251957|ref|YP_004585925.1|	-	3.1e-12	46.7	2.7	0.4	10.9	0.0	8.2	8	2	0	8	8	8	3	PAS	fold
HisKA	PF00512.25	gi|336251957|ref|YP_004585925.1|	-	1.7e-10	40.7	2.0	6e-10	39.0	0.1	3.0	2	0	0	2	2	2	1	His	Kinase	A	(phospho-acceptor)	domain
HATPase_c_5	PF14501.6	gi|336251957|ref|YP_004585925.1|	-	0.00025	20.9	0.0	0.00068	19.5	0.0	1.7	1	0	0	1	1	1	1	GHKL	domain
HTH_20	PF12840.7	gi|336251957|ref|YP_004585925.1|	-	0.00026	21.0	0.0	0.00079	19.4	0.0	1.8	1	0	0	1	1	1	1	Helix-turn-helix	domain
PAS_10	PF13596.6	gi|336251957|ref|YP_004585925.1|	-	0.00058	20.4	0.0	0.54	10.9	0.0	3.6	3	1	0	3	3	3	1	PAS	domain
HATPase_c_2	PF13581.6	gi|336251957|ref|YP_004585925.1|	-	0.00085	19.3	0.1	0.0032	17.4	0.1	2.1	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
HATPase_c_3	PF13589.6	gi|336251957|ref|YP_004585925.1|	-	0.017	15.0	0.0	0.039	13.8	0.0	1.6	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
SgrR_N	PF12793.7	gi|336251957|ref|YP_004585925.1|	-	0.047	13.9	0.0	0.13	12.5	0.0	1.7	1	0	0	1	1	1	0	Sugar	transport-related	sRNA	regulator	N-term
TrmB	PF01978.19	gi|336251957|ref|YP_004585925.1|	-	0.063	13.2	0.0	0.2	11.5	0.0	1.8	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
Nsp1_C	PF05064.13	gi|336251957|ref|YP_004585925.1|	-	0.47	10.3	2.6	7.3	6.4	0.1	3.2	3	0	0	3	3	3	0	Nsp1-like	C-terminal	region
DUF2070	PF09843.9	gi|336251960|ref|YP_004585928.1|	-	4e-107	358.8	0.5	4.6e-107	358.7	0.5	1.0	1	0	0	1	1	1	1	Predicted	membrane	protein	(DUF2070)
Sulfatase	PF00884.23	gi|336251961|ref|YP_004585929.1|	-	4.3e-36	124.9	0.1	5.5e-36	124.5	0.1	1.1	1	0	0	1	1	1	1	Sulfatase
Phosphodiest	PF01663.22	gi|336251961|ref|YP_004585929.1|	-	1.6e-11	44.4	0.6	2.7e-06	27.2	0.2	2.4	2	1	0	2	2	2	2	Type	I	phosphodiesterase	/	nucleotide	pyrophosphatase
DUF1501	PF07394.12	gi|336251961|ref|YP_004585929.1|	-	0.013	14.6	0.4	0.013	14.6	0.4	1.6	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF1501)
HAT	PF02184.16	gi|336251961|ref|YP_004585929.1|	-	0.018	15.0	0.0	0.053	13.5	0.0	1.8	2	0	0	2	2	2	0	HAT	(Half-A-TPR)	repeat
Cwf_Cwc_15	PF04889.12	gi|336251961|ref|YP_004585929.1|	-	4.2	7.0	7.8	6	6.5	7.8	1.1	1	0	0	1	1	1	0	Cwf15/Cwc15	cell	cycle	control	protein
GtrA	PF04138.14	gi|336251962|ref|YP_004585930.1|	-	4.6e-22	78.5	7.1	5.3e-22	78.3	7.1	1.0	1	0	0	1	1	1	1	GtrA-like	protein
SNARE_assoc	PF09335.11	gi|336251963|ref|YP_004585931.1|	-	3.4e-13	50.1	2.1	3.4e-13	50.1	2.1	1.5	2	0	0	2	2	2	1	SNARE	associated	Golgi	protein
NTP_transf_2	PF01909.23	gi|336251965|ref|YP_004585933.1|	-	1.8e-09	37.7	0.3	3e-09	37.1	0.3	1.4	1	0	0	1	1	1	1	Nucleotidyltransferase	domain
Polbeta	PF18765.1	gi|336251965|ref|YP_004585933.1|	-	5.7e-09	35.9	0.0	1.1e-08	35.1	0.0	1.5	1	0	0	1	1	1	1	Polymerase	beta,	Nucleotidyltransferase
HTH_11	PF08279.12	gi|336251965|ref|YP_004585933.1|	-	1.3e-08	34.6	0.1	3.4e-08	33.3	0.0	1.7	2	0	0	2	2	2	1	HTH	domain
HTH_IclR	PF09339.10	gi|336251965|ref|YP_004585933.1|	-	0.00011	21.9	0.0	0.00022	21.0	0.0	1.5	1	0	0	1	1	1	1	IclR	helix-turn-helix	domain
MarR_2	PF12802.7	gi|336251965|ref|YP_004585933.1|	-	0.00073	19.4	0.8	0.0023	17.8	0.1	2.1	2	0	0	2	2	2	1	MarR	family
TrmB	PF01978.19	gi|336251965|ref|YP_004585933.1|	-	0.00094	19.0	0.0	0.0033	17.3	0.0	1.9	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
GntR	PF00392.21	gi|336251965|ref|YP_004585933.1|	-	0.0039	16.8	0.1	0.0078	15.8	0.1	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	gntR	family
HTH_20	PF12840.7	gi|336251965|ref|YP_004585933.1|	-	0.0054	16.8	0.1	0.013	15.6	0.1	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_29	PF13551.6	gi|336251965|ref|YP_004585933.1|	-	0.0058	16.6	0.0	0.012	15.6	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn	helix
MarR	PF01047.22	gi|336251965|ref|YP_004585933.1|	-	0.032	14.1	0.0	0.076	13.0	0.0	1.6	1	0	0	1	1	1	0	MarR	family
HTH_24	PF13412.6	gi|336251965|ref|YP_004585933.1|	-	0.048	13.2	0.0	0.082	12.5	0.0	1.4	1	0	0	1	1	1	0	Winged	helix-turn-helix	DNA-binding
HTH_23	PF13384.6	gi|336251965|ref|YP_004585933.1|	-	0.049	13.4	0.0	0.13	12.1	0.0	1.6	1	0	0	1	1	1	0	Homeodomain-like	domain
DUF294	PF03445.13	gi|336251965|ref|YP_004585933.1|	-	0.062	13.1	0.0	0.099	12.4	0.0	1.4	1	0	0	1	1	1	0	Putative	nucleotidyltransferase	DUF294
HTH_41	PF14502.6	gi|336251965|ref|YP_004585933.1|	-	0.13	12.0	0.0	0.51	10.1	0.0	1.9	2	0	0	2	2	2	0	Helix-turn-helix	domain
Adenyl_cycl_N	PF12633.7	gi|336251965|ref|YP_004585933.1|	-	0.18	11.7	0.0	0.25	11.2	0.0	1.2	1	0	0	1	1	1	0	Adenylate	cyclase	NT	domain
HTH_10	PF04967.12	gi|336251966|ref|YP_004585934.1|	-	0.022	14.5	0.0	0.056	13.3	0.0	1.7	1	0	0	1	1	1	0	HTH	DNA	binding	domain
Oxidored_molyb	PF00174.19	gi|336251967|ref|YP_004585935.1|	-	2.2e-23	82.7	0.0	3e-23	82.3	0.0	1.1	1	0	0	1	1	1	1	Oxidoreductase	molybdopterin	binding	domain
DUF2249	PF10006.9	gi|336251968|ref|YP_004585936.1|	-	8.5e-84	275.4	24.7	2.5e-27	94.5	0.8	4.1	4	0	0	4	4	4	4	Uncharacterized	conserved	protein	(DUF2249)
SBP_bac_5	PF00496.22	gi|336251970|ref|YP_004585938.1|	-	3.4e-54	184.3	0.0	4e-54	184.0	0.0	1.1	1	0	0	1	1	1	1	Bacterial	extracellular	solute-binding	proteins,	family	5	Middle
CRISPR_assoc	PF08798.11	gi|336251970|ref|YP_004585938.1|	-	0.16	12.0	0.0	0.27	11.3	0.0	1.3	1	0	0	1	1	1	0	CRISPR	associated	protein
AA_permease_2	PF13520.6	gi|336251971|ref|YP_004585939.1|	-	4e-31	108.3	40.1	5.4e-31	107.9	40.1	1.1	1	0	0	1	1	1	1	Amino	acid	permease
Spore_permease	PF03845.13	gi|336251971|ref|YP_004585939.1|	-	0.025	13.4	19.8	0.11	11.4	8.4	2.6	2	1	0	2	2	2	0	Spore	germination	protein
Ion_trans_2	PF07885.16	gi|336251972|ref|YP_004585940.1|	-	1.1e-06	28.5	5.4	1.1e-06	28.5	5.4	1.8	2	0	0	2	2	2	1	Ion	channel
Form_Nir_trans	PF01226.17	gi|336251973|ref|YP_004585941.1|	-	5.5e-35	120.8	8.5	6.2e-35	120.6	8.5	1.0	1	0	0	1	1	1	1	Formate/nitrite	transporter
Usp	PF00582.26	gi|336251974|ref|YP_004585942.1|	-	7.1e-32	110.8	2.4	8e-32	110.7	2.4	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
RHH_1	PF01402.21	gi|336251975|ref|YP_004585943.1|	-	7e-05	22.6	0.3	7e-05	22.6	0.3	1.8	2	0	0	2	2	2	1	Ribbon-helix-helix	protein,	copG	family
RHH_8	PF17723.1	gi|336251975|ref|YP_004585943.1|	-	0.0075	16.4	0.1	0.0078	16.4	0.1	1.2	1	0	0	1	1	1	1	Ribbon-Helix-Helix	transcriptional	regulator	family
Secretin_N	PF03958.17	gi|336251975|ref|YP_004585943.1|	-	0.058	13.8	0.2	0.1	13.0	0.2	1.3	1	0	0	1	1	1	0	Bacterial	type	II/III	secretion	system	short	domain
zf-ribbon_3	PF13248.6	gi|336251976|ref|YP_004585944.1|	-	0.0071	15.7	0.1	0.011	15.1	0.1	1.3	1	0	0	1	1	1	1	zinc-ribbon	domain
zinc_ribbon_2	PF13240.6	gi|336251976|ref|YP_004585944.1|	-	0.021	14.5	0.2	0.038	13.7	0.2	1.4	1	0	0	1	1	1	0	zinc-ribbon	domain
Usp	PF00582.26	gi|336251977|ref|YP_004585945.1|	-	1.6e-65	219.9	9.6	3e-33	115.3	1.0	2.0	2	0	0	2	2	2	2	Universal	stress	protein	family
DUF21	PF01595.20	gi|336251978|ref|YP_004585946.1|	-	1e-23	84.0	0.0	1.6e-23	83.3	0.0	1.2	1	0	0	1	1	1	1	Cyclin	M	transmembrane	N-terminal	domain
CBS	PF00571.28	gi|336251978|ref|YP_004585946.1|	-	5.7e-11	42.7	0.2	3.5e-09	37.0	0.1	2.4	2	0	0	2	2	2	1	CBS	domain
PadR	PF03551.14	gi|336251979|ref|YP_004585947.1|	-	2.1e-17	62.8	1.4	2.6e-17	62.5	1.4	1.1	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_45	PF14947.6	gi|336251979|ref|YP_004585947.1|	-	0.0015	18.5	0.1	0.0021	18.0	0.1	1.3	1	0	0	1	1	1	1	Winged	helix-turn-helix
DUF1495	PF07381.11	gi|336251979|ref|YP_004585947.1|	-	0.0042	16.9	0.0	0.0065	16.3	0.0	1.3	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain	(DUF1495)
HTH_27	PF13463.6	gi|336251979|ref|YP_004585947.1|	-	0.0078	16.7	0.1	0.01	16.3	0.1	1.4	1	1	0	1	1	1	1	Winged	helix	DNA-binding	domain
MarR_2	PF12802.7	gi|336251979|ref|YP_004585947.1|	-	0.015	15.2	0.1	0.92	9.4	0.0	2.6	3	0	0	3	3	3	0	MarR	family
DUF4364	PF14277.6	gi|336251979|ref|YP_004585947.1|	-	0.099	12.4	0.0	0.12	12.1	0.0	1.3	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
CMD	PF02627.20	gi|336251980|ref|YP_004585948.1|	-	4e-12	46.0	0.0	6.8e-12	45.3	0.0	1.4	1	0	0	1	1	1	1	Carboxymuconolactone	decarboxylase	family
Peptidase_M16_C	PF05193.21	gi|336251980|ref|YP_004585948.1|	-	0.11	12.6	0.0	1.8	8.5	0.0	2.0	2	0	0	2	2	2	0	Peptidase	M16	inactive	domain
Usp	PF00582.26	gi|336251981|ref|YP_004585949.1|	-	1.8e-33	116.0	0.4	2.1e-33	115.8	0.4	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
Usp	PF00582.26	gi|336251982|ref|YP_004585950.1|	-	6.6e-56	188.7	10.2	6.7e-32	110.9	1.8	2.1	2	0	0	2	2	2	2	Universal	stress	protein	family
Usp	PF00582.26	gi|336251983|ref|YP_004585951.1|	-	4.6e-30	105.0	2.8	5.4e-30	104.8	2.8	1.1	1	0	0	1	1	1	1	Universal	stress	protein	family
GARS_N	PF02844.15	gi|336251983|ref|YP_004585951.1|	-	0.026	15.3	0.0	0.068	14.0	0.0	1.8	1	1	0	1	1	1	0	Phosphoribosylglycinamide	synthetase,	N	domain
Toprim_3	PF13362.6	gi|336251983|ref|YP_004585951.1|	-	0.054	13.9	0.1	0.4	11.1	0.0	2.0	1	1	1	2	2	2	0	Toprim	domain
DUF2188	PF09954.9	gi|336251983|ref|YP_004585951.1|	-	0.058	13.5	0.8	7.1	6.9	0.1	2.5	2	0	0	2	2	2	0	Uncharacterized	protein	conserved	in	bacteria	(DUF2188)
IclR	PF01614.18	gi|336251984|ref|YP_004585952.1|	-	6.5e-32	110.1	0.0	1.6e-30	105.6	0.0	2.2	2	0	0	2	2	2	1	Bacterial	transcriptional	regulator
HTH_IclR	PF09339.10	gi|336251984|ref|YP_004585952.1|	-	4.2e-14	52.1	0.4	2.6e-13	49.5	0.1	2.2	2	0	0	2	2	2	1	IclR	helix-turn-helix	domain
HTH_24	PF13412.6	gi|336251984|ref|YP_004585952.1|	-	2.3e-08	33.5	0.0	4.2e-08	32.6	0.0	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|336251984|ref|YP_004585952.1|	-	1.8e-07	30.9	0.0	7.7e-07	28.9	0.0	1.9	2	0	0	2	2	2	1	MarR	family
HTH_5	PF01022.20	gi|336251984|ref|YP_004585952.1|	-	2.1e-07	30.7	0.0	4.2e-07	29.7	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_11	PF08279.12	gi|336251984|ref|YP_004585952.1|	-	2.6e-05	24.1	0.0	0.00013	21.8	0.0	2.1	2	0	0	2	2	2	1	HTH	domain
MarR	PF01047.22	gi|336251984|ref|YP_004585952.1|	-	7.3e-05	22.6	0.0	0.00016	21.6	0.0	1.5	1	0	0	1	1	1	1	MarR	family
TrmB	PF01978.19	gi|336251984|ref|YP_004585952.1|	-	9.1e-05	22.3	0.5	0.00025	20.9	0.1	1.9	2	0	0	2	2	2	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_45	PF14947.6	gi|336251984|ref|YP_004585952.1|	-	0.0001	22.2	0.1	0.00023	21.1	0.1	1.6	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_20	PF12840.7	gi|336251984|ref|YP_004585952.1|	-	0.00013	21.9	0.0	0.00036	20.5	0.0	1.7	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_34	PF13601.6	gi|336251984|ref|YP_004585952.1|	-	0.0017	18.5	0.1	0.0033	17.6	0.1	1.5	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
DUF742	PF05331.11	gi|336251984|ref|YP_004585952.1|	-	0.0029	17.4	0.0	0.008	16.0	0.0	1.7	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF742)
GAF	PF01590.26	gi|336251984|ref|YP_004585952.1|	-	0.0032	18.1	0.0	0.0076	16.9	0.0	1.8	1	1	0	1	1	1	1	GAF	domain
GAF_2	PF13185.6	gi|336251984|ref|YP_004585952.1|	-	0.0033	17.7	0.1	0.0094	16.2	0.1	1.8	1	1	0	1	1	1	1	GAF	domain
FaeA	PF04703.12	gi|336251984|ref|YP_004585952.1|	-	0.0047	17.3	0.1	0.011	16.1	0.1	1.6	1	0	0	1	1	1	1	FaeA-like	protein
HTH_DeoR	PF08220.12	gi|336251984|ref|YP_004585952.1|	-	0.0083	15.9	0.0	0.017	14.8	0.0	1.5	1	0	0	1	1	1	1	DeoR-like	helix-turn-helix	domain
GAF_3	PF13492.6	gi|336251984|ref|YP_004585952.1|	-	0.015	15.6	0.0	0.03	14.7	0.0	1.5	1	0	0	1	1	1	0	GAF	domain
HTH_27	PF13463.6	gi|336251984|ref|YP_004585952.1|	-	0.017	15.6	0.0	0.041	14.4	0.0	1.6	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_AsnC-type	PF13404.6	gi|336251984|ref|YP_004585952.1|	-	0.018	14.9	0.0	0.055	13.3	0.0	1.8	1	0	0	1	1	1	0	AsnC-type	helix-turn-helix	domain
Fe_dep_repress	PF01325.19	gi|336251984|ref|YP_004585952.1|	-	0.026	14.7	0.2	0.055	13.7	0.2	1.5	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
Sigma70_r4	PF04545.16	gi|336251984|ref|YP_004585952.1|	-	0.19	11.3	0.6	0.44	10.1	0.1	1.9	2	0	0	2	2	2	0	Sigma-70,	region	4
IclR	PF01614.18	gi|336251985|ref|YP_004585953.1|	-	1.5e-26	92.7	0.0	4e-26	91.4	0.0	1.7	2	0	0	2	2	2	1	Bacterial	transcriptional	regulator
HTH_IclR	PF09339.10	gi|336251985|ref|YP_004585953.1|	-	4.6e-13	48.8	0.3	5.6e-12	45.3	0.1	2.5	2	1	0	2	2	2	1	IclR	helix-turn-helix	domain
HTH_20	PF12840.7	gi|336251985|ref|YP_004585953.1|	-	2e-09	37.4	0.6	5.4e-09	36.0	0.1	2.0	2	0	0	2	2	2	1	Helix-turn-helix	domain
MarR	PF01047.22	gi|336251985|ref|YP_004585953.1|	-	5.2e-08	32.7	0.0	9.2e-08	31.9	0.0	1.4	1	0	0	1	1	1	1	MarR	family
HTH_24	PF13412.6	gi|336251985|ref|YP_004585953.1|	-	1.4e-07	31.0	0.0	2.5e-07	30.2	0.0	1.4	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|336251985|ref|YP_004585953.1|	-	3.4e-07	30.0	0.0	9.2e-07	28.7	0.0	1.7	1	0	0	1	1	1	1	MarR	family
HTH_5	PF01022.20	gi|336251985|ref|YP_004585953.1|	-	1.7e-05	24.6	0.0	4.2e-05	23.3	0.0	1.6	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
HTH_11	PF08279.12	gi|336251985|ref|YP_004585953.1|	-	0.0002	21.2	0.1	0.00069	19.5	0.0	1.9	2	0	0	2	2	2	1	HTH	domain
HTH_27	PF13463.6	gi|336251985|ref|YP_004585953.1|	-	0.00028	21.3	0.0	0.00058	20.3	0.0	1.6	1	0	0	1	1	1	1	Winged	helix	DNA-binding	domain
HTH_40	PF14493.6	gi|336251985|ref|YP_004585953.1|	-	0.0022	18.4	0.0	0.0054	17.2	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_10	PF04967.12	gi|336251985|ref|YP_004585953.1|	-	0.0034	17.2	0.2	0.011	15.6	0.1	1.9	2	0	0	2	2	2	1	HTH	DNA	binding	domain
HTH_23	PF13384.6	gi|336251985|ref|YP_004585953.1|	-	0.0046	16.7	0.0	0.02	14.7	0.0	1.9	2	0	0	2	2	2	1	Homeodomain-like	domain
Sigma70_r4	PF04545.16	gi|336251985|ref|YP_004585953.1|	-	0.014	14.9	0.0	0.12	12.0	0.0	2.2	2	0	0	2	2	2	0	Sigma-70,	region	4
LexA_DNA_bind	PF01726.16	gi|336251985|ref|YP_004585953.1|	-	0.025	14.4	0.0	0.93	9.3	0.0	2.4	2	0	0	2	2	2	0	LexA	DNA	binding	domain
TrmB	PF01978.19	gi|336251985|ref|YP_004585953.1|	-	0.03	14.2	0.0	0.1	12.5	0.0	1.8	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_DeoR	PF08220.12	gi|336251985|ref|YP_004585953.1|	-	0.043	13.6	0.0	0.043	13.6	0.0	1.6	2	0	0	2	2	1	0	DeoR-like	helix-turn-helix	domain
HTH_38	PF13936.6	gi|336251985|ref|YP_004585953.1|	-	0.045	13.5	0.0	0.092	12.5	0.0	1.5	1	0	0	1	1	1	0	Helix-turn-helix	domain
HTH_29	PF13551.6	gi|336251985|ref|YP_004585953.1|	-	0.047	13.7	0.0	1.9	8.6	0.0	2.9	3	0	0	3	3	3	0	Winged	helix-turn	helix
HTH_Crp_2	PF13545.6	gi|336251985|ref|YP_004585953.1|	-	0.093	12.7	0.1	1.9	8.6	0.0	2.2	2	0	0	2	2	2	0	Crp-like	helix-turn-helix	domain
HTH_34	PF13601.6	gi|336251985|ref|YP_004585953.1|	-	0.15	12.3	0.0	0.65	10.2	0.0	1.9	2	0	0	2	2	2	0	Winged	helix	DNA-binding	domain
Fe_dep_repress	PF01325.19	gi|336251985|ref|YP_004585953.1|	-	0.16	12.2	0.0	0.5	10.6	0.0	1.8	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
DUF1803	PF08820.10	gi|336251985|ref|YP_004585953.1|	-	0.2	11.7	0.0	0.4	10.7	0.0	1.6	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF1803)
Aldedh	PF00171.22	gi|336251986|ref|YP_004585954.1|	-	1.6e-145	485.1	0.1	2.1e-145	484.8	0.1	1.0	1	0	0	1	1	1	1	Aldehyde	dehydrogenase	family
OmdA	PF13376.6	gi|336251986|ref|YP_004585954.1|	-	0.0043	17.0	1.2	0.0091	16.0	1.2	1.4	1	0	0	1	1	1	1	Bacteriocin-protection,	YdeI	or	OmpD-Associated
LuxC	PF05893.14	gi|336251986|ref|YP_004585954.1|	-	0.015	14.4	0.0	0.025	13.6	0.0	1.3	1	0	0	1	1	1	0	Acyl-CoA	reductase	(LuxC)
MDMPI_N	PF11716.8	gi|336251986|ref|YP_004585954.1|	-	0.02	15.6	2.2	0.055	14.1	2.2	1.7	1	0	0	1	1	1	0	Mycothiol	maleylpyruvate	isomerase	N-terminal	domain
SPOUT_MTase_2	PF14419.6	gi|336251986|ref|YP_004585954.1|	-	0.066	12.6	0.0	0.27	10.6	0.0	1.9	2	0	0	2	2	2	0	AF2226-like	SPOUT	RNA	Methylase	fused	to	THUMP
HTH_10	PF04967.12	gi|336251987|ref|YP_004585955.1|	-	4.3e-18	64.9	0.0	7e-18	64.2	0.0	1.4	1	0	0	1	1	1	1	HTH	DNA	binding	domain
HTH_Tnp_1_2	PF13022.6	gi|336251987|ref|YP_004585955.1|	-	7.8e-05	22.8	0.0	0.00016	21.8	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	of	insertion	element	transposase
HTH_24	PF13412.6	gi|336251987|ref|YP_004585955.1|	-	0.00019	20.9	0.1	0.00036	20.0	0.1	1.5	1	0	0	1	1	1	1	Winged	helix-turn-helix	DNA-binding
Sigma70_r4_2	PF08281.12	gi|336251987|ref|YP_004585955.1|	-	0.0019	17.8	0.3	1.1	8.9	0.0	2.3	2	0	0	2	2	2	2	Sigma-70,	region	4
Sigma70_r4	PF04545.16	gi|336251987|ref|YP_004585955.1|	-	0.0058	16.1	0.1	0.013	15.0	0.1	1.6	1	0	0	1	1	1	1	Sigma-70,	region	4
HTH_5	PF01022.20	gi|336251987|ref|YP_004585955.1|	-	0.0096	15.8	0.0	0.018	14.9	0.0	1.4	1	0	0	1	1	1	1	Bacterial	regulatory	protein,	arsR	family
MarR_2	PF12802.7	gi|336251987|ref|YP_004585955.1|	-	0.017	15.0	0.0	0.088	12.7	0.0	2.3	2	0	0	2	2	2	0	MarR	family
HTH_11	PF08279.12	gi|336251987|ref|YP_004585955.1|	-	0.023	14.6	0.0	0.054	13.4	0.0	1.5	1	0	0	1	1	1	0	HTH	domain
HTH_50	PF18024.1	gi|336251987|ref|YP_004585955.1|	-	0.028	14.0	0.0	0.058	13.0	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
GntR	PF00392.21	gi|336251987|ref|YP_004585955.1|	-	0.043	13.5	0.2	0.086	12.5	0.2	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	gntR	family
K_channel_TID	PF07941.11	gi|336251987|ref|YP_004585955.1|	-	0.073	13.5	0.2	0.18	12.3	0.0	1.7	2	0	0	2	2	2	0	Potassium	channel	Kv1.4	tandem	inactivation	domain
HTH_AsnC-type	PF13404.6	gi|336251987|ref|YP_004585955.1|	-	0.093	12.6	0.1	0.37	10.7	0.0	2.1	2	0	0	2	2	2	0	AsnC-type	helix-turn-helix	domain
Pro_dh	PF01619.18	gi|336251988|ref|YP_004585956.1|	-	5.1e-26	91.9	0.1	1.1e-25	90.8	0.1	1.5	1	1	0	1	1	1	1	Proline	dehydrogenase
Peptidase_C27	PF05407.12	gi|336251988|ref|YP_004585956.1|	-	0.033	14.3	0.5	0.055	13.6	0.5	1.4	1	0	0	1	1	1	0	Rubella	virus	endopeptidase
SSF	PF00474.17	gi|336251990|ref|YP_004585958.1|	-	2.5e-65	220.9	28.4	4e-65	220.3	28.4	1.3	1	0	0	1	1	1	1	Sodium:solute	symporter	family
DAGK_cat	PF00781.24	gi|336251994|ref|YP_004585962.1|	-	4.7e-23	81.2	0.2	9e-23	80.3	0.2	1.4	1	0	0	1	1	1	1	Diacylglycerol	kinase	catalytic	domain
NAD_kinase	PF01513.21	gi|336251994|ref|YP_004585962.1|	-	0.021	14.0	0.2	0.033	13.4	0.2	1.2	1	0	0	1	1	1	0	ATP-NAD	kinase
Mrr_cat	PF04471.12	gi|336251995|ref|YP_004585963.1|	-	3.7e-29	101.1	0.1	5.4e-29	100.5	0.1	1.2	1	0	0	1	1	1	1	Restriction	endonuclease
Mrr_cat_2	PF13156.6	gi|336251995|ref|YP_004585963.1|	-	3.3e-16	59.3	0.4	5.4e-16	58.6	0.4	1.4	1	0	0	1	1	1	1	Restriction	endonuclease
Imm52	PF15579.6	gi|336251995|ref|YP_004585963.1|	-	0.074	12.9	0.0	0.34	10.8	0.0	2.0	2	0	0	2	2	2	0	Immunity	protein	52
DUF3269	PF11673.8	gi|336251995|ref|YP_004585963.1|	-	0.15	12.5	0.2	0.76	10.2	0.0	2.1	2	0	0	2	2	2	0	Protein	of	unknown	function	(DUF3269)
AhpC-TSA	PF00578.21	gi|336251996|ref|YP_004585964.1|	-	9.5e-15	54.6	0.1	1.6e-14	53.9	0.1	1.3	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.10	gi|336251996|ref|YP_004585964.1|	-	7e-14	51.8	0.1	1.1e-13	51.1	0.1	1.3	1	1	0	1	1	1	1	Redoxin
Thioredoxin_8	PF13905.6	gi|336251996|ref|YP_004585964.1|	-	4.1e-05	23.8	0.0	0.00015	22.0	0.0	1.8	1	1	0	1	1	1	1	Thioredoxin-like
Thioredoxin_2	PF13098.6	gi|336251996|ref|YP_004585964.1|	-	4.8e-05	23.8	0.4	0.00014	22.2	0.4	1.7	1	1	0	1	1	1	1	Thioredoxin-like	domain
Thioredoxin_3	PF13192.6	gi|336251996|ref|YP_004585964.1|	-	0.11	12.5	0.1	7.4	6.7	0.2	2.2	2	0	0	2	2	2	0	Thioredoxin	domain
Oxidored_q3	PF00499.20	gi|336251997|ref|YP_004585965.1|	-	0.027	14.2	3.2	0.79	9.4	5.1	2.2	2	1	0	2	2	2	0	NADH-ubiquinone/plastoquinone	oxidoreductase	chain	6
PQQ_2	PF13360.6	gi|336251998|ref|YP_004585966.1|	-	9.4e-32	110.5	10.9	2.6e-19	69.8	0.6	3.4	1	1	1	2	2	2	2	PQQ-like	domain
PQQ_3	PF13570.6	gi|336251998|ref|YP_004585966.1|	-	3e-22	78.4	33.3	6.4e-06	26.5	0.3	8.5	8	0	0	8	8	8	7	PQQ-like	domain
PQQ	PF01011.21	gi|336251998|ref|YP_004585966.1|	-	3.5e-18	64.6	8.1	0.0036	17.2	0.0	6.6	6	0	0	6	6	6	5	PQQ	enzyme	repeat
Trypan_PARP	PF05887.11	gi|336251999|ref|YP_004585967.1|	-	0.095	12.7	0.3	1.3	9.0	0.0	2.1	2	0	0	2	2	2	0	Procyclic	acidic	repetitive	protein	(PARP)
Polysacc_deac_1	PF01522.21	gi|336252000|ref|YP_004585968.1|	-	5.7e-16	58.5	0.0	9.2e-16	57.9	0.0	1.3	1	0	0	1	1	1	1	Polysaccharide	deacetylase
DUF2334	PF10096.9	gi|336252000|ref|YP_004585968.1|	-	0.0001	22.1	0.1	0.00023	20.9	0.1	1.6	1	1	0	1	1	1	1	Uncharacterized	protein	conserved	in	bacteria	(DUF2334)
OrfB_Zn_ribbon	PF07282.11	gi|336252001|ref|YP_004585969.1|	-	2.2e-23	82.0	2.0	4.2e-23	81.0	2.0	1.5	1	0	0	1	1	1	1	Putative	transposase	DNA-binding	domain
OrfB_IS605	PF01385.19	gi|336252001|ref|YP_004585969.1|	-	1.7e-17	63.7	0.0	4.4e-17	62.4	0.0	1.7	1	0	0	1	1	1	1	Probable	transposase
C1_2	PF03107.16	gi|336252001|ref|YP_004585969.1|	-	0.0077	16.5	1.5	0.02	15.2	1.5	1.6	1	0	0	1	1	1	1	C1	domain
Ribosomal_L37ae	PF01780.19	gi|336252001|ref|YP_004585969.1|	-	0.093	12.8	1.3	0.19	11.8	0.6	1.8	2	0	0	2	2	2	0	Ribosomal	L37ae	protein	family
Zn_Tnp_IS1595	PF12760.7	gi|336252001|ref|YP_004585969.1|	-	0.15	12.0	3.0	0.35	10.9	3.0	1.6	1	0	0	1	1	1	0	Transposase	zinc-ribbon	domain
PadR	PF03551.14	gi|336252002|ref|YP_004585970.1|	-	7.8e-14	51.4	0.3	9.2e-14	51.2	0.3	1.1	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
HTH_45	PF14947.6	gi|336252002|ref|YP_004585970.1|	-	0.0059	16.6	0.1	0.0075	16.2	0.1	1.2	1	0	0	1	1	1	1	Winged	helix-turn-helix
HTH_27	PF13463.6	gi|336252002|ref|YP_004585970.1|	-	0.032	14.7	0.0	0.044	14.3	0.0	1.3	1	1	0	1	1	1	0	Winged	helix	DNA-binding	domain
DUF4358	PF14270.6	gi|336252002|ref|YP_004585970.1|	-	0.046	14.0	0.1	0.081	13.2	0.1	1.4	1	1	0	1	1	1	0	Domain	of	unknown	function	(DUF4358)
DUF4364	PF14277.6	gi|336252002|ref|YP_004585970.1|	-	0.047	13.4	0.1	0.059	13.1	0.1	1.2	1	0	0	1	1	1	0	Domain	of	unknown	function	(DUF4364)
PEP_hydrolase	PF09370.10	gi|336252003|ref|YP_004585971.1|	-	1.6e-129	430.9	0.2	1.8e-129	430.7	0.2	1.0	1	0	0	1	1	1	1	Phosphoenolpyruvate	hydrolase-like
NMO	PF03060.15	gi|336252003|ref|YP_004585971.1|	-	0.043	13.2	0.2	0.087	12.2	0.1	1.5	2	0	0	2	2	2	0	Nitronate	monooxygenase
AcylCoA_dehyd_C	PF12186.8	gi|336252003|ref|YP_004585971.1|	-	0.1	12.7	0.0	0.2	11.8	0.0	1.4	1	0	0	1	1	1	0	Acyl-CoA	dehydrogenase	C	terminal
Cupin_2	PF07883.11	gi|336252004|ref|YP_004585972.1|	-	2.2e-20	72.2	1.5	3.6e-20	71.4	1.5	1.4	1	0	0	1	1	1	1	Cupin	domain
Cupin_3	PF05899.12	gi|336252004|ref|YP_004585972.1|	-	5.4e-09	35.6	0.4	1.2e-08	34.5	0.4	1.6	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF861)
AraC_binding	PF02311.19	gi|336252004|ref|YP_004585972.1|	-	1.9e-08	34.3	0.1	3.1e-08	33.6	0.1	1.3	1	0	0	1	1	1	1	AraC-like	ligand	binding	domain
Cupin_1	PF00190.22	gi|336252004|ref|YP_004585972.1|	-	3e-08	33.4	0.0	3.9e-08	33.0	0.0	1.1	1	0	0	1	1	1	1	Cupin
MannoseP_isomer	PF01050.18	gi|336252004|ref|YP_004585972.1|	-	4.3e-06	26.7	0.0	5.5e-06	26.3	0.0	1.1	1	0	0	1	1	1	1	Mannose-6-phosphate	isomerase
Cupin_7	PF12973.7	gi|336252004|ref|YP_004585972.1|	-	0.00011	22.0	0.2	0.00017	21.4	0.2	1.3	1	0	0	1	1	1	1	ChrR	Cupin-like	domain
CENP-C_C	PF11699.8	gi|336252004|ref|YP_004585972.1|	-	0.00037	20.7	0.0	0.00053	20.2	0.0	1.1	1	0	0	1	1	1	1	Mif2/CENP-C	like
Cupin_6	PF12852.7	gi|336252004|ref|YP_004585972.1|	-	0.0031	17.2	0.1	0.0037	17.0	0.1	1.2	1	0	0	1	1	1	1	Cupin
Pirin_C	PF05726.13	gi|336252004|ref|YP_004585972.1|	-	0.0066	16.8	0.0	0.009	16.3	0.0	1.2	1	0	0	1	1	1	1	Pirin	C-terminal	cupin	domain
DMSP_lyase	PF16867.5	gi|336252004|ref|YP_004585972.1|	-	0.018	14.7	0.0	0.024	14.3	0.0	1.1	1	0	0	1	1	1	0	Dimethlysulfonioproprionate	lyase
ARD	PF03079.14	gi|336252004|ref|YP_004585972.1|	-	0.066	13.4	0.2	0.1	12.8	0.2	1.2	1	0	0	1	1	1	0	ARD/ARD'	family
Asp_Arg_Hydrox	PF05118.15	gi|336252004|ref|YP_004585972.1|	-	0.2	11.5	0.0	0.52	10.1	0.0	1.7	1	1	0	1	1	1	0	Aspartyl/Asparaginyl	beta-hydroxylase
UPF0261	PF06792.11	gi|336252005|ref|YP_004585973.1|	-	1.4e-169	564.3	1.5	1.6e-169	564.2	1.5	1.0	1	0	0	1	1	1	1	Uncharacterised	protein	family	(UPF0261)
DBI_PRT	PF02277.17	gi|336252005|ref|YP_004585973.1|	-	0.0066	15.7	1.0	0.011	15.0	1.0	1.3	1	0	0	1	1	1	1	Phosphoribosyltransferase
Clp_N	PF02861.20	gi|336252005|ref|YP_004585973.1|	-	0.016	15.3	0.1	5.6	7.2	0.0	2.7	2	0	0	2	2	2	0	Clp	amino	terminal	domain,	pathogenicity	island	component
PAS_4	PF08448.10	gi|336252006|ref|YP_004585974.1|	-	1.3e-28	99.5	2.7	3.3e-16	59.5	0.2	3.2	3	0	0	3	3	3	2	PAS	fold
HATPase_c	PF02518.26	gi|336252006|ref|YP_004585974.1|	-	1.6e-27	96.2	0.0	4.3e-27	94.8	0.0	1.8	1	0	0	1	1	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_3	PF08447.12	gi|336252006|ref|YP_004585974.1|	-	8.1e-18	64.5	1.1	3e-12	46.6	0.1	2.7	2	0	0	2	2	2	2	PAS	fold
PAS_9	PF13426.7	gi|336252006|ref|YP_004585974.1|	-	2.1e-14	53.6	0.3	5.9e-08	32.9	0.0	2.7	2	0	0	2	2	2	2	PAS	domain
HisKA	PF00512.25	gi|336252006|ref|YP_004585974.1|	-	5.9e-12	45.4	0.2	5.9e-12	45.4	0.2	3.1	4	0	0	4	4	4	1	His	Kinase	A	(phospho-acceptor)	domain
PAS	PF00989.25	gi|336252006|ref|YP_004585974.1|	-	1.1e-10	41.4	0.2	1.7e-05	24.8	0.0	2.8	2	0	0	2	2	2	2	PAS	fold
GAF_3	PF13492.6	gi|336252006|ref|YP_004585974.1|	-	4.2e-06	27.1	0.0	2.1e-05	24.9	0.0	2.1	2	0	0	2	2	2	1	GAF	domain
GAF_2	PF13185.6	gi|336252006|ref|YP_004585974.1|	-	5.2e-06	26.8	0.4	0.00012	22.3	0.1	3.2	3	1	0	3	3	2	1	GAF	domain
PAS_8	PF13188.7	gi|336252006|ref|YP_004585974.1|	-	1.1e-05	25.3	0.1	0.00029	20.8	0.0	2.9	2	0	0	2	2	2	1	PAS	domain
HATPase_c_5	PF14501.6	gi|336252006|ref|YP_004585974.1|	-	7.2e-05	22.6	0.0	0.0002	21.2	0.0	1.7	1	0	0	1	1	1	1	GHKL	domain
MEKHLA	PF08670.11	gi|336252006|ref|YP_004585974.1|	-	0.011	15.7	0.0	0.026	14.4	0.0	1.6	1	0	0	1	1	1	0	MEKHLA	domain
GAF	PF01590.26	gi|336252006|ref|YP_004585974.1|	-	0.012	16.3	0.1	0.12	13.0	0.0	2.7	3	1	1	4	4	3	0	GAF	domain
HATPase_c_3	PF13589.6	gi|336252006|ref|YP_004585974.1|	-	0.019	14.8	0.0	0.047	13.5	0.0	1.6	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HATPase_c_2	PF13581.6	gi|336252006|ref|YP_004585974.1|	-	0.066	13.2	0.2	0.4	10.6	0.2	2.4	1	1	0	1	1	1	0	Histidine	kinase-like	ATPase	domain
His_kinase	PF06580.13	gi|336252006|ref|YP_004585974.1|	-	0.12	12.7	2.1	0.52	10.7	0.3	2.6	3	0	0	3	3	2	0	Histidine	kinase
OmpH	PF03938.14	gi|336252006|ref|YP_004585974.1|	-	0.15	12.4	1.6	1.1	9.5	0.4	2.3	2	0	0	2	2	2	0	Outer	membrane	protein	(OmpH-like)
ERM	PF00769.19	gi|336252006|ref|YP_004585974.1|	-	2	8.2	9.8	1.1	9.0	4.3	2.4	2	0	0	2	2	2	0	Ezrin/radixin/moesin	family
LolA_like	PF17131.4	gi|336252007|ref|YP_004585975.1|	-	0.00038	20.2	0.1	0.0018	18.0	0.1	2.0	1	1	0	1	1	1	1	Outer	membrane	lipoprotein-sorting	protein
DUF2092	PF09865.9	gi|336252007|ref|YP_004585975.1|	-	0.075	12.4	0.1	1.7	8.0	0.0	2.9	4	0	0	4	4	4	0	Predicted	periplasmic	protein	(DUF2092)
LolA	PF03548.15	gi|336252007|ref|YP_004585975.1|	-	0.11	12.2	0.0	0.39	10.4	0.0	1.8	2	0	0	2	2	2	0	Outer	membrane	lipoprotein	carrier	protein	LolA
YDG	PF18657.1	gi|336252007|ref|YP_004585975.1|	-	0.5	10.6	2.6	0.81	9.9	0.4	2.4	2	0	0	2	2	2	0	YDG	domain
DUF502	PF04367.13	gi|336252008|ref|YP_004585976.1|	-	1.5e-15	57.0	1.0	1.9e-15	56.6	0.0	1.6	2	0	0	2	2	2	1	Protein	of	unknown	function	(DUF502)
LBP_C	PF17386.2	gi|336252008|ref|YP_004585976.1|	-	0.084	12.8	0.1	0.15	12.0	0.1	1.3	1	0	0	1	1	1	0	Lacto-N-biose	phosphorylase	C-terminal	domain
Popeye	PF04831.13	gi|336252008|ref|YP_004585976.1|	-	0.23	11.6	0.3	0.37	10.9	0.3	1.3	1	0	0	1	1	1	0	Popeye	protein	conserved	region
GFO_IDH_MocA	PF01408.22	gi|336252009|ref|YP_004585977.1|	-	3.3e-23	82.8	0.1	5.3e-23	82.1	0.1	1.3	1	0	0	1	1	1	1	Oxidoreductase	family,	NAD-binding	Rossmann	fold
GFO_IDH_MocA_C	PF02894.17	gi|336252009|ref|YP_004585977.1|	-	9.2e-08	32.1	0.0	1.5e-07	31.4	0.0	1.3	1	0	0	1	1	1	1	Oxidoreductase	family,	C-terminal	alpha/beta	domain
Semialdhyde_dh	PF01118.24	gi|336252009|ref|YP_004585977.1|	-	0.00018	21.9	0.0	0.00034	21.0	0.0	1.4	1	0	0	1	1	1	1	Semialdehyde	dehydrogenase,	NAD	binding	domain
Phage_holin_6_1	PF09682.10	gi|336252010|ref|YP_004585978.1|	-	0.11	12.9	0.0	0.13	12.7	0.0	1.1	1	0	0	1	1	1	0	Bacteriophage	holin	of	superfamily	6	(Holin_LLH)
Phage_integrase	PF00589.22	gi|336252011|ref|YP_004585979.1|	-	7e-10	39.0	0.2	2.6e-09	37.1	0.2	1.9	1	1	0	1	1	1	1	Phage	integrase	family
zf-ribbon_3	PF13248.6	gi|336252012|ref|YP_004585980.1|	-	0.084	12.3	2.4	0.2	11.1	2.4	1.6	1	0	0	1	1	1	0	zinc-ribbon	domain
Pribosyltran	PF00156.27	gi|336252012|ref|YP_004585980.1|	-	0.095	12.2	0.0	0.15	11.6	0.0	1.3	1	0	0	1	1	1	0	Phosphoribosyl	transferase	domain
DNA_processg_A	PF02481.15	gi|336252013|ref|YP_004585981.1|	-	1.7e-54	184.3	0.0	2.2e-54	183.9	0.0	1.1	1	0	0	1	1	1	1	DNA	recombination-mediator	protein	A
LDcluster4	PF18306.1	gi|336252013|ref|YP_004585981.1|	-	3.8e-09	36.3	0.1	7.5e-09	35.4	0.1	1.5	2	0	0	2	2	2	1	SLOG	cluster4	family
Glyco_hydro_14	PF01373.17	gi|336252013|ref|YP_004585981.1|	-	0.16	10.9	0.0	0.69	8.8	0.0	1.8	2	0	0	2	2	2	0	Glycosyl	hydrolase	family	14
Arylsulfotrans	PF05935.11	gi|336252014|ref|YP_004585982.1|	-	4.7e-09	35.6	0.8	2.2e-07	30.2	0.1	2.5	2	1	0	2	2	2	2	Arylsulfotransferase	(ASST)
Arylsulfotran_2	PF14269.6	gi|336252014|ref|YP_004585982.1|	-	4e-08	33.0	0.1	2.2e-05	24.0	0.0	3.2	2	1	1	3	3	3	1	Arylsulfotransferase	(ASST)
NHL	PF01436.21	gi|336252014|ref|YP_004585982.1|	-	0.025	14.6	1.7	2	8.6	0.1	3.2	3	0	0	3	3	3	0	NHL	repeat
2TM	PF13239.6	gi|336252015|ref|YP_004585983.1|	-	0.024	14.9	2.9	0.03	14.6	2.9	1.2	1	0	0	1	1	1	0	2TM	domain
Cpta_toxin	PF07254.12	gi|336252015|ref|YP_004585983.1|	-	0.21	11.6	1.1	0.22	11.5	1.1	1.0	1	0	0	1	1	1	0	Membrane-bound	toxin	component	of	toxin-antitoxin	system
DUF3188	PF11384.8	gi|336252015|ref|YP_004585983.1|	-	0.45	10.3	5.1	0.62	9.8	1.0	2.1	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF3188)
Multi_Drug_Res	PF00893.19	gi|336252017|ref|YP_004585985.1|	-	7e-27	93.9	5.8	9.9e-27	93.5	5.8	1.2	1	0	0	1	1	1	1	Small	Multidrug	Resistance	protein
EamA	PF00892.20	gi|336252017|ref|YP_004585985.1|	-	0.14	12.4	13.5	0.97	9.6	13.0	1.9	1	1	0	1	1	1	0	EamA-like	transporter	family
PAC2	PF09754.9	gi|336252018|ref|YP_004585986.1|	-	2.1e-37	129.2	0.7	2.5e-37	129.0	0.7	1.0	1	0	0	1	1	1	1	PAC2	family
Seryl_tRNA_N	PF02403.22	gi|336252018|ref|YP_004585986.1|	-	0.0071	16.6	0.7	0.06	13.6	0.1	2.1	2	0	0	2	2	2	1	Seryl-tRNA	synthetase	N-terminal	domain
WXG100	PF06013.12	gi|336252018|ref|YP_004585986.1|	-	0.03	14.6	2.8	0.064	13.5	2.8	1.5	1	0	0	1	1	1	0	Proteins	of	100	residues	with	WXG
TMEM247	PF15444.6	gi|336252018|ref|YP_004585986.1|	-	0.045	13.8	0.1	0.059	13.4	0.1	1.3	1	0	0	1	1	1	0	Transmembrane	protein	247
NTP_transf_3	PF12804.7	gi|336252018|ref|YP_004585986.1|	-	0.05	14.0	1.4	0.11	12.9	1.2	1.5	1	1	0	1	1	1	0	MobA-like	NTP	transferase	domain
FlxA	PF14282.6	gi|336252018|ref|YP_004585986.1|	-	0.17	11.9	11.2	0.33	11.0	11.2	1.4	1	0	0	1	1	1	0	FlxA-like	protein
SseC	PF04888.12	gi|336252018|ref|YP_004585986.1|	-	0.36	10.4	3.4	4.8	6.7	1.7	2.1	2	0	0	2	2	2	0	Secretion	system	effector	C	(SseC)	like	family
DUF4140	PF13600.6	gi|336252018|ref|YP_004585986.1|	-	1.7	9.2	6.3	5.2	7.6	2.5	2.5	2	1	0	2	2	2	0	N-terminal	domain	of	unknown	function	(DUF4140)
Peptidase_M24	PF00557.24	gi|336252019|ref|YP_004585987.1|	-	1.4e-37	129.4	0.1	2e-37	128.9	0.1	1.2	1	0	0	1	1	1	1	Metallopeptidase	family	M24
Creatinase_N	PF01321.18	gi|336252019|ref|YP_004585987.1|	-	7.1e-22	78.5	0.1	1.3e-21	77.6	0.1	1.5	1	0	0	1	1	1	1	Creatinase/Prolidase	N-terminal	domain
HAD_2	PF13419.6	gi|336252020|ref|YP_004585988.1|	-	5.6e-14	52.6	0.0	6.6e-14	52.4	0.0	1.2	1	0	0	1	1	1	1	Haloacid	dehalogenase-like	hydrolase
Hydrolase	PF00702.26	gi|336252020|ref|YP_004585988.1|	-	3.6e-13	50.3	0.0	6.9e-12	46.1	0.0	2.1	1	1	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
Hydrolase_like	PF13242.6	gi|336252020|ref|YP_004585988.1|	-	0.00021	21.3	0.0	0.00045	20.2	0.0	1.6	1	0	0	1	1	1	1	HAD-hyrolase-like
HAD	PF12710.7	gi|336252020|ref|YP_004585988.1|	-	0.0037	17.7	0.1	0.0043	17.5	0.1	1.2	1	0	0	1	1	1	1	haloacid	dehalogenase-like	hydrolase
zf-TFIIB	PF13453.6	gi|336252020|ref|YP_004585988.1|	-	0.24	10.8	0.6	23	4.4	0.0	2.4	2	0	0	2	2	2	0	Transcription	factor	zinc-finger
MazE_antitoxin	PF04014.18	gi|336252021|ref|YP_004585989.1|	-	0.0018	18.2	0.3	0.0029	17.5	0.3	1.3	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE,	bacterial	antitoxin
PrlF_antitoxin	PF15937.5	gi|336252021|ref|YP_004585989.1|	-	0.0084	16.5	0.0	0.011	16.2	0.0	1.2	1	0	0	1	1	1	1	prlF	antitoxin	for	toxin	YhaV_toxin
MoaF	PF10703.9	gi|336252021|ref|YP_004585989.1|	-	0.07	13.1	0.0	0.076	13.0	0.0	1.2	1	0	0	1	1	1	0	MoaF	N-terminal	domain
PIN	PF01850.21	gi|336252022|ref|YP_004585990.1|	-	6e-16	59.1	0.2	6.7e-16	58.9	0.2	1.0	1	0	0	1	1	1	1	PIN	domain
FAD-oxidase_C	PF02913.19	gi|336252023|ref|YP_004585991.1|	-	1.4e-61	208.3	0.3	5.3e-61	206.4	0.1	1.9	2	0	0	2	2	2	1	FAD	linked	oxidases,	C-terminal	domain
FAD_binding_4	PF01565.23	gi|336252023|ref|YP_004585991.1|	-	1.6e-40	138.1	1.4	2.9e-40	137.2	1.4	1.4	1	0	0	1	1	1	1	FAD	binding	domain
Fer4_17	PF13534.6	gi|336252023|ref|YP_004585991.1|	-	2.8e-10	40.6	4.5	5.2e-10	39.7	4.5	1.5	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|336252023|ref|YP_004585991.1|	-	2.4e-08	34.3	5.2	5.1e-08	33.3	5.2	1.6	1	0	0	1	1	1	1	4Fe-4S	dicluster	domain
CCG	PF02754.16	gi|336252023|ref|YP_004585991.1|	-	4.6e-07	29.9	0.0	1.1e-05	25.5	0.0	2.5	2	0	0	2	2	2	1	Cysteine-rich	domain
Fer4_9	PF13187.6	gi|336252023|ref|YP_004585991.1|	-	0.012	15.8	3.2	0.053	13.7	0.4	2.4	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|336252023|ref|YP_004585991.1|	-	0.024	14.8	7.5	0.1	12.7	2.0	2.2	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Cytokin-bind	PF09265.10	gi|336252023|ref|YP_004585991.1|	-	0.043	13.2	0.0	0.066	12.6	0.0	1.2	1	0	0	1	1	1	0	Cytokinin	dehydrogenase	1,	FAD	and	cytokinin	binding
Fer4_21	PF14697.6	gi|336252023|ref|YP_004585991.1|	-	0.069	13.3	3.1	0.22	11.7	0.5	2.4	2	0	0	2	2	2	0	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|336252023|ref|YP_004585991.1|	-	0.45	11.2	7.0	2.8	8.6	7.5	2.1	1	1	1	2	2	2	0	4Fe-4S	dicluster	domain
Fer4	PF00037.27	gi|336252023|ref|YP_004585991.1|	-	9.3	6.2	14.0	0.16	11.8	4.2	2.5	2	0	0	2	2	2	0	4Fe-4S	binding	domain
2-Hacid_dh_C	PF02826.19	gi|336252024|ref|YP_004585992.1|	-	1.8e-54	183.8	0.0	3.1e-54	183.0	0.0	1.4	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
2-Hacid_dh	PF00389.30	gi|336252024|ref|YP_004585992.1|	-	1.1e-13	51.0	0.0	1.4e-13	50.6	0.0	1.1	1	0	0	1	1	1	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	catalytic	domain
F420_oxidored	PF03807.17	gi|336252024|ref|YP_004585992.1|	-	0.00053	20.5	0.0	0.0029	18.1	0.0	2.1	2	0	0	2	2	2	1	NADP	oxidoreductase	coenzyme	F420-dependent
IlvN	PF07991.12	gi|336252024|ref|YP_004585992.1|	-	0.022	14.3	0.0	0.041	13.5	0.0	1.4	1	0	0	1	1	1	0	Acetohydroxy	acid	isomeroreductase,	NADPH-binding	domain
TrkA_N	PF02254.18	gi|336252024|ref|YP_004585992.1|	-	0.043	14.1	0.7	1.8	8.9	0.1	3.0	3	0	0	3	3	3	0	TrkA-N	domain
DUF4440	PF14534.6	gi|336252024|ref|YP_004585992.1|	-	0.11	12.9	0.0	1.4	9.4	0.0	2.5	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4440)
Shikimate_DH	PF01488.20	gi|336252024|ref|YP_004585992.1|	-	0.15	12.1	0.1	0.66	10.0	0.0	2.0	3	0	0	3	3	3	0	Shikimate	/	quinate	5-dehydrogenase
Ifi-6-16	PF06140.13	gi|336252024|ref|YP_004585992.1|	-	5.6	7.0	6.9	0.49	10.4	0.5	2.3	3	0	0	3	3	3	0	Interferon-induced	6-16	family
Peptidase_M20	PF01546.28	gi|336252025|ref|YP_004585993.1|	-	3.8e-23	82.3	3.5	5.8e-23	81.7	3.5	1.3	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.14	gi|336252025|ref|YP_004585993.1|	-	3.9e-11	42.8	0.7	3.9e-11	42.8	0.7	1.7	2	0	0	2	2	2	1	Peptidase	dimerisation	domain
Radical_SAM	PF04055.21	gi|336252025|ref|YP_004585993.1|	-	0.14	12.5	0.3	1.9	8.8	0.0	2.5	2	1	0	2	2	2	0	Radical	SAM	superfamily
PALP	PF00291.25	gi|336252026|ref|YP_004585994.1|	-	1.3e-74	251.3	6.1	1.8e-74	250.8	6.1	1.2	1	0	0	1	1	1	1	Pyridoxal-phosphate	dependent	enzyme
Arylsulfotrans	PF05935.11	gi|336252028|ref|YP_004585996.1|	-	4.5e-11	42.3	1.3	4.5e-08	32.4	1.2	3.3	1	1	2	3	3	3	3	Arylsulfotransferase	(ASST)
Arylsulfotran_2	PF14269.6	gi|336252028|ref|YP_004585996.1|	-	3.1e-09	36.6	0.3	2e-07	30.7	0.1	2.5	2	1	0	2	2	2	1	Arylsulfotransferase	(ASST)
NHL	PF01436.21	gi|336252028|ref|YP_004585996.1|	-	0.0053	16.7	4.7	0.14	12.2	0.0	3.7	4	0	0	4	4	4	2	NHL	repeat
Glu_cyclase_2	PF05096.12	gi|336252028|ref|YP_004585996.1|	-	0.12	11.8	0.0	0.28	10.6	0.0	1.5	1	0	0	1	1	1	0	Glutamine	cyclotransferase
DUF4787	PF16029.5	gi|336252028|ref|YP_004585996.1|	-	0.16	12.1	0.7	0.46	10.6	0.1	2.0	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4787)
Aminotran_3	PF00202.21	gi|336252029|ref|YP_004585997.1|	-	5.1e-75	252.6	0.0	1.2e-74	251.4	0.0	1.5	1	1	0	1	1	1	1	Aminotransferase	class-III
BCCT	PF02028.17	gi|336252030|ref|YP_004585998.1|	-	1e-156	522.2	49.1	1.2e-156	522.0	49.1	1.0	1	0	0	1	1	1	1	BCCT,	betaine/carnitine/choline	family	transporter
DUF5510	PF17629.2	gi|336252030|ref|YP_004585998.1|	-	0.61	10.1	0.0	0.61	10.1	0.0	3.1	3	0	0	3	3	3	0	Family	of	unknown	function	(DUF5510)
Sdh5	PF03937.16	gi|336252031|ref|YP_004585999.1|	-	0.028	14.4	0.1	0.064	13.2	0.1	1.6	1	0	0	1	1	1	0	Flavinator	of	succinate	dehydrogenase
Peptidase_M20	PF01546.28	gi|336252032|ref|YP_004586000.1|	-	1.4e-25	90.2	4.3	2.4e-25	89.5	4.3	1.4	1	0	0	1	1	1	1	Peptidase	family	M20/M25/M40
M20_dimer	PF07687.14	gi|336252032|ref|YP_004586000.1|	-	1.3e-10	41.1	0.3	3.4e-10	39.8	0.3	1.6	1	0	0	1	1	1	1	Peptidase	dimerisation	domain
Ribonuc_L-PSP	PF01042.21	gi|336252033|ref|YP_004586001.1|	-	3.3e-36	124.0	0.0	3.6e-36	123.8	0.0	1.0	1	0	0	1	1	1	1	Endoribonuclease	L-PSP
GGDEF	PF00990.21	gi|336252033|ref|YP_004586001.1|	-	0.01	15.6	0.0	0.013	15.2	0.0	1.2	1	0	0	1	1	1	0	Diguanylate	cyclase,	GGDEF	domain
Aminotran_3	PF00202.21	gi|336252034|ref|YP_004586002.1|	-	1e-102	343.8	0.0	1.3e-102	343.6	0.0	1.0	1	0	0	1	1	1	1	Aminotransferase	class-III
AFOR_C	PF01314.18	gi|336252035|ref|YP_004586003.1|	-	6.9e-77	259.0	0.0	1.2e-76	258.2	0.0	1.3	1	0	0	1	1	1	1	Aldehyde	ferredoxin	oxidoreductase,	domains	2	&	3
AFOR_N	PF02730.15	gi|336252035|ref|YP_004586003.1|	-	2.5e-60	203.7	0.1	5e-60	202.8	0.1	1.5	2	0	0	2	2	2	1	Aldehyde	ferredoxin	oxidoreductase,	N-terminal	domain
HTH_20	PF12840.7	gi|336252036|ref|YP_004586004.1|	-	7.1e-06	26.0	0.0	1.4e-05	25.1	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
Lar_restr_allev	PF14354.6	gi|336252036|ref|YP_004586004.1|	-	0.023	15.1	0.5	5.9	7.4	0.1	2.5	2	0	0	2	2	2	0	Restriction	alleviation	protein	Lar
FYVE	PF01363.21	gi|336252036|ref|YP_004586004.1|	-	0.27	11.4	3.1	0.19	11.9	1.2	1.7	2	0	0	2	2	2	0	FYVE	zinc	finger
DZR	PF12773.7	gi|336252036|ref|YP_004586004.1|	-	0.57	10.2	5.9	1.2	9.2	1.5	2.5	2	1	0	2	2	2	0	Double	zinc	ribbon
TF_Zn_Ribbon	PF08271.12	gi|336252036|ref|YP_004586004.1|	-	1.1	8.9	12.7	1.1	8.9	3.7	3.6	2	1	0	2	2	2	0	TFIIB	zinc-binding
zinc_ribbon_2	PF13240.6	gi|336252036|ref|YP_004586004.1|	-	1.2	9.0	5.6	3.5	7.5	0.0	3.4	3	0	0	3	3	3	0	zinc-ribbon	domain
Nudix_N_2	PF14803.6	gi|336252036|ref|YP_004586004.1|	-	3.1	7.8	7.2	57	3.7	3.7	3.3	2	1	0	2	2	2	0	Nudix	N-terminal
Na_Ca_ex	PF01699.24	gi|336252037|ref|YP_004586005.1|	-	5.6e-46	156.2	33.0	1.3e-23	83.6	14.6	2.0	2	0	0	2	2	2	2	Sodium/calcium	exchanger	protein
Sod_Fe_N	PF00081.22	gi|336252038|ref|YP_004586006.1|	-	2.1e-31	108.2	0.6	3.4e-31	107.5	0.6	1.4	1	0	0	1	1	1	1	Iron/manganese	superoxide	dismutases,	alpha-hairpin	domain
Sod_Fe_C	PF02777.18	gi|336252038|ref|YP_004586006.1|	-	4.1e-28	97.5	0.0	6.4e-28	96.9	0.0	1.3	1	0	0	1	1	1	1	Iron/manganese	superoxide	dismutases,	C-terminal	domain
Pirin	PF02678.16	gi|336252039|ref|YP_004586007.1|	-	2.5e-21	75.7	0.0	4.5e-21	74.8	0.0	1.5	1	0	0	1	1	1	1	Pirin
Pirin_C	PF05726.13	gi|336252039|ref|YP_004586007.1|	-	3.9e-13	49.7	0.0	3.8e-12	46.5	0.0	2.1	2	0	0	2	2	2	1	Pirin	C-terminal	cupin	domain
Cupin_2	PF07883.11	gi|336252039|ref|YP_004586007.1|	-	0.00017	21.2	1.0	0.039	13.6	0.1	2.5	2	0	0	2	2	2	2	Cupin	domain
Pyr_redox_2	PF07992.14	gi|336252040|ref|YP_004586008.1|	-	4.9e-20	72.0	4.5	4.7e-12	45.7	0.1	2.0	1	1	1	2	2	2	2	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|336252040|ref|YP_004586008.1|	-	5.7e-15	55.4	1.2	6e-09	35.6	0.0	2.9	1	1	1	3	3	3	2	Pyridine	nucleotide-disulphide	oxidoreductase
HI0933_like	PF03486.14	gi|336252040|ref|YP_004586008.1|	-	9.7e-13	47.6	0.0	5.2e-06	25.4	0.0	2.2	2	0	0	2	2	2	2	HI0933-like	protein
DAO	PF01266.24	gi|336252040|ref|YP_004586008.1|	-	8.7e-12	45.3	1.3	5.7e-05	22.9	0.0	2.5	1	1	2	3	3	3	2	FAD	dependent	oxidoreductase
FAD_binding_2	PF00890.24	gi|336252040|ref|YP_004586008.1|	-	7.9e-08	31.8	0.7	1e-05	24.9	0.1	2.3	1	1	1	2	2	2	2	FAD	binding	domain
GIDA	PF01134.22	gi|336252040|ref|YP_004586008.1|	-	2.7e-07	30.0	0.1	6.7e-06	25.4	0.0	2.2	1	1	0	2	2	2	1	Glucose	inhibited	division	protein	A
NAD_binding_9	PF13454.6	gi|336252040|ref|YP_004586008.1|	-	4.8e-07	29.9	0.0	0.0062	16.5	0.0	2.4	2	0	0	2	2	2	2	FAD-NAD(P)-binding
FAD_binding_3	PF01494.19	gi|336252040|ref|YP_004586008.1|	-	6.1e-07	29.0	4.6	0.0022	17.3	0.1	2.1	1	1	1	2	2	2	2	FAD	binding	domain
FAD_oxidored	PF12831.7	gi|336252040|ref|YP_004586008.1|	-	3e-06	26.8	0.3	1.3e-05	24.8	0.0	1.9	2	0	0	2	2	2	1	FAD	dependent	oxidoreductase
Thi4	PF01946.17	gi|336252040|ref|YP_004586008.1|	-	2.9e-05	23.4	0.0	6.3e-05	22.3	0.0	1.5	1	0	0	1	1	1	1	Thi4	family
NAD_binding_8	PF13450.6	gi|336252040|ref|YP_004586008.1|	-	0.00025	21.2	0.0	0.00057	20.1	0.0	1.6	1	0	0	1	1	1	1	NAD(P)-binding	Rossmann-like	domain
K_oxygenase	PF13434.6	gi|336252040|ref|YP_004586008.1|	-	0.00069	18.8	0.1	0.8	8.8	0.0	2.1	1	1	1	2	2	2	2	L-lysine	6-monooxygenase	(NADPH-requiring)
Pyr_redox	PF00070.27	gi|336252040|ref|YP_004586008.1|	-	0.00088	19.8	0.2	0.036	14.6	0.2	2.3	1	1	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase
Lycopene_cycl	PF05834.12	gi|336252040|ref|YP_004586008.1|	-	0.0015	17.7	0.1	0.0034	16.5	0.0	1.6	1	1	1	2	2	2	1	Lycopene	cyclase	protein
AlaDh_PNT_C	PF01262.21	gi|336252040|ref|YP_004586008.1|	-	0.0029	16.9	0.0	0.0044	16.4	0.0	1.5	1	0	0	1	1	1	1	Alanine	dehydrogenase/PNT,	C-terminal	domain
Amino_oxidase	PF01593.24	gi|336252040|ref|YP_004586008.1|	-	0.056	12.7	0.0	0.092	12.0	0.0	1.3	1	0	0	1	1	1	0	Flavin	containing	amine	oxidoreductase
Trp_halogenase	PF04820.14	gi|336252040|ref|YP_004586008.1|	-	0.088	11.6	1.1	1.9	7.2	0.1	2.2	2	0	0	2	2	2	0	Tryptophan	halogenase
3HCDH_N	PF02737.18	gi|336252040|ref|YP_004586008.1|	-	0.093	12.6	0.0	0.17	11.7	0.0	1.6	1	0	0	1	1	1	0	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
TetR_N	PF00440.23	gi|336252042|ref|YP_004586010.1|	-	1.8e-10	40.5	0.0	3.3e-10	39.6	0.0	1.5	1	0	0	1	1	1	1	Bacterial	regulatory	proteins,	tetR	family
TetR_C_6	PF13977.6	gi|336252042|ref|YP_004586010.1|	-	4.6e-10	39.7	1.0	9.3e-10	38.7	1.0	1.5	1	0	0	1	1	1	1	BetI-type	transcriptional	repressor,	C-terminal
TetR_C_27	PF17935.1	gi|336252042|ref|YP_004586010.1|	-	1.7e-06	28.0	0.3	3.6e-06	27.0	0.3	1.5	1	0	0	1	1	1	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_17	PF17922.1	gi|336252042|ref|YP_004586010.1|	-	9.5e-05	22.4	0.1	0.00024	21.1	0.0	1.7	2	0	0	2	2	2	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_24	PF17932.1	gi|336252042|ref|YP_004586010.1|	-	0.0023	18.2	1.4	0.0038	17.5	0.3	1.9	2	1	0	2	2	2	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_29	PF17938.1	gi|336252042|ref|YP_004586010.1|	-	0.0076	16.3	0.1	0.016	15.3	0.1	1.5	1	0	0	1	1	1	1	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_9	PF14514.6	gi|336252042|ref|YP_004586010.1|	-	0.027	14.6	0.1	0.049	13.8	0.1	1.5	1	0	0	1	1	1	0	Tetracyclin	repressor-like,	C-terminal	domain
TetR_C_31	PF17940.1	gi|336252042|ref|YP_004586010.1|	-	0.04	14.1	0.4	0.081	13.1	0.4	1.5	1	0	0	1	1	1	0	Tetracyclin	repressor-like,	C-terminal	domain
HEPN_DZIP3	PF18738.1	gi|336252042|ref|YP_004586010.1|	-	0.16	11.7	0.1	0.23	11.2	0.1	1.2	1	0	0	1	1	1	0	DZIP3/	hRUL138-like	HEPN
PIN_9	PF18477.1	gi|336252043|ref|YP_004586011.1|	-	0.044	14.1	0.0	0.057	13.7	0.0	1.3	1	0	0	1	1	1	0	PIN	like	domain
VPS13_mid_rpt	PF16910.5	gi|336252044|ref|YP_004586012.1|	-	0.11	12.0	0.1	0.14	11.6	0.1	1.1	1	0	0	1	1	1	0	Repeating	coiled	region	of	VPS13
SlyX	PF04102.12	gi|336252045|ref|YP_004586013.1|	-	0.017	15.7	0.8	0.06	14.0	0.6	1.8	2	0	0	2	2	2	0	SlyX
HAMP	PF00672.25	gi|336252045|ref|YP_004586013.1|	-	0.054	13.9	0.5	0.079	13.3	0.5	1.3	1	0	0	1	1	1	0	HAMP	domain
GTP_EFTU	PF00009.27	gi|336252046|ref|YP_004586014.1|	-	8.9e-57	191.8	0.1	1.1e-56	191.5	0.1	1.1	1	0	0	1	1	1	1	Elongation	factor	Tu	GTP	binding	domain
GTP_EFTU_D3	PF03143.17	gi|336252046|ref|YP_004586014.1|	-	4.6e-37	126.7	0.0	1.2e-36	125.4	0.0	1.7	2	0	0	2	2	2	1	Elongation	factor	Tu	C-terminal	domain
GTP_EFTU_D2	PF03144.25	gi|336252046|ref|YP_004586014.1|	-	4.6e-15	55.8	3.1	1.4e-14	54.2	1.2	2.5	2	0	0	2	2	2	1	Elongation	factor	Tu	domain	2
MMR_HSR1	PF01926.23	gi|336252046|ref|YP_004586014.1|	-	8.3e-08	32.3	0.2	5.4e-07	29.7	0.2	2.3	1	1	0	1	1	1	1	50S	ribosome-binding	GTPase
RsgA_GTPase	PF03193.16	gi|336252046|ref|YP_004586014.1|	-	0.00043	20.2	2.3	0.05	13.5	0.2	2.5	1	1	1	2	2	2	2	RsgA	GTPase
Ras	PF00071.22	gi|336252046|ref|YP_004586014.1|	-	0.0016	18.0	1.1	0.0074	15.9	0.4	2.1	2	0	0	2	2	2	1	Ras	family
Dynamin_N	PF00350.23	gi|336252046|ref|YP_004586014.1|	-	0.0024	18.0	0.1	0.99	9.4	0.0	2.4	1	1	1	2	2	2	2	Dynamin	family
SRPRB	PF09439.10	gi|336252046|ref|YP_004586014.1|	-	0.0053	16.2	0.0	0.12	11.8	0.0	2.3	1	1	0	1	1	1	1	Signal	recognition	particle	receptor	beta	subunit
GTP_EFTU_D4	PF14578.6	gi|336252046|ref|YP_004586014.1|	-	0.011	15.6	0.6	0.042	13.7	0.6	2.0	1	0	0	1	1	1	0	Elongation	factor	Tu	domain	4
FeoB_N	PF02421.18	gi|336252046|ref|YP_004586014.1|	-	0.011	15.2	0.2	0.21	11.1	0.4	2.4	2	1	0	2	2	2	0	Ferrous	iron	transport	protein	B
Septin	PF00735.18	gi|336252046|ref|YP_004586014.1|	-	0.014	14.6	0.1	0.035	13.4	0.1	1.5	1	1	0	1	1	1	0	Septin
Gtr1_RagA	PF04670.12	gi|336252046|ref|YP_004586014.1|	-	0.023	14.1	0.4	0.45	9.8	0.4	2.2	1	1	0	1	1	1	0	Gtr1/RagA	G	protein	conserved	region
Roc	PF08477.13	gi|336252046|ref|YP_004586014.1|	-	0.15	12.3	0.0	22	5.3	0.0	2.5	2	0	0	2	2	2	0	Ras	of	Complex,	Roc,	domain	of	DAPkinase
DUF2513	PF10711.9	gi|336252047|ref|YP_004586015.1|	-	8.3e-06	26.0	0.0	1.7e-05	25.1	0.0	1.5	1	1	0	1	1	1	1	Hypothetical	protein	(DUF2513)
PadR	PF03551.14	gi|336252047|ref|YP_004586015.1|	-	2.4e-05	24.2	0.0	4.3e-05	23.4	0.0	1.4	1	0	0	1	1	1	1	Transcriptional	regulator	PadR-like	family
FUR	PF01475.19	gi|336252047|ref|YP_004586015.1|	-	3.7e-05	23.8	0.0	6.8e-05	23.0	0.0	1.4	1	0	0	1	1	1	1	Ferric	uptake	regulator	family
HTH_20	PF12840.7	gi|336252047|ref|YP_004586015.1|	-	0.003	17.6	0.0	0.0056	16.7	0.0	1.5	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_11	PF08279.12	gi|336252047|ref|YP_004586015.1|	-	0.0093	15.9	0.0	0.017	15.1	0.0	1.5	1	0	0	1	1	1	1	HTH	domain
RuBisCO_small	PF00101.20	gi|336252047|ref|YP_004586015.1|	-	0.012	15.5	0.0	0.039	13.9	0.0	1.8	1	1	0	1	1	1	0	Ribulose	bisphosphate	carboxylase,	small	chain
HTH_34	PF13601.6	gi|336252047|ref|YP_004586015.1|	-	0.019	15.1	0.0	0.029	14.5	0.0	1.4	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_24	PF13412.6	gi|336252047|ref|YP_004586015.1|	-	0.021	14.4	0.1	0.058	13.0	0.0	1.9	3	0	0	3	3	3	0	Winged	helix-turn-helix	DNA-binding
DUF86	PF01934.17	gi|336252047|ref|YP_004586015.1|	-	0.022	14.6	0.1	0.12	12.3	0.0	1.9	1	1	0	2	2	2	0	Protein	of	unknown	function	DUF86
MarR_2	PF12802.7	gi|336252047|ref|YP_004586015.1|	-	0.026	14.4	0.0	0.062	13.2	0.0	1.7	1	1	0	1	1	1	0	MarR	family
Replic_Relax	PF13814.6	gi|336252047|ref|YP_004586015.1|	-	0.028	14.5	0.0	0.036	14.1	0.0	1.2	1	0	0	1	1	1	0	Replication-relaxation
TrmB	PF01978.19	gi|336252047|ref|YP_004586015.1|	-	0.035	14.0	0.0	0.083	12.8	0.0	1.7	1	0	0	1	1	1	0	Sugar-specific	transcriptional	regulator	TrmB
HTH_27	PF13463.6	gi|336252047|ref|YP_004586015.1|	-	0.049	14.1	0.0	0.1	13.1	0.0	1.5	1	0	0	1	1	1	0	Winged	helix	DNA-binding	domain
HTH_5	PF01022.20	gi|336252047|ref|YP_004586015.1|	-	0.064	13.1	0.0	0.11	12.4	0.0	1.4	1	0	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
HTH_45	PF14947.6	gi|336252047|ref|YP_004586015.1|	-	0.064	13.2	0.0	0.18	11.8	0.0	1.8	2	1	0	2	2	1	0	Winged	helix-turn-helix
HxlR	PF01638.17	gi|336252047|ref|YP_004586015.1|	-	0.073	12.9	0.0	0.15	11.9	0.0	1.7	1	1	0	1	1	1	0	HxlR-like	helix-turn-helix
HTH_36	PF13730.6	gi|336252047|ref|YP_004586015.1|	-	0.16	12.0	0.0	0.26	11.3	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
DctP	PF03480.13	gi|336252049|ref|YP_004586017.1|	-	4.6e-26	91.8	0.0	8.4e-26	91.0	0.0	1.4	1	1	0	1	1	1	1	Bacterial	extracellular	solute-binding	protein,	family	7
SCAN	PF02023.17	gi|336252049|ref|YP_004586017.1|	-	0.18	11.6	0.7	0.35	10.7	0.2	1.7	2	0	0	2	2	2	0	SCAN	domain
DctQ	PF04290.12	gi|336252050|ref|YP_004586018.1|	-	1.9e-18	66.6	13.5	2e-18	66.6	12.8	1.3	1	1	0	1	1	1	1	Tripartite	ATP-independent	periplasmic	transporters,	DctQ	component
DctM	PF06808.12	gi|336252051|ref|YP_004586019.1|	-	2.1e-75	254.1	42.0	2.5e-75	253.9	42.0	1.0	1	0	0	1	1	1	1	Tripartite	ATP-independent	periplasmic	transporter,	DctM	component
Meth_synt_2	PF01717.18	gi|336252053|ref|YP_004586021.1|	-	2e-18	66.7	0.5	2.7e-10	40.1	0.2	2.2	2	0	0	2	2	2	2	Cobalamin-independent	synthase,	Catalytic	domain
Cpn60_TCP1	PF00118.24	gi|336252053|ref|YP_004586021.1|	-	0.091	11.4	0.1	0.14	10.8	0.1	1.1	1	0	0	1	1	1	0	TCP-1/cpn60	chaperonin	family
M-inducer_phosp	PF06617.13	gi|336252053|ref|YP_004586021.1|	-	0.15	11.4	0.1	0.22	10.8	0.1	1.2	1	0	0	1	1	1	0	M-phase	inducer	phosphatase
Med11	PF10280.9	gi|336252053|ref|YP_004586021.1|	-	0.15	12.5	0.3	2.5	8.6	0.2	2.2	2	0	0	2	2	2	0	Mediator	complex	protein
MatE	PF01554.18	gi|336252054|ref|YP_004586022.1|	-	1.1e-46	158.4	20.3	8.4e-24	84.0	8.0	2.6	2	1	0	2	2	2	2	MatE
Polysacc_synt_C	PF14667.6	gi|336252054|ref|YP_004586022.1|	-	1.6e-09	38.0	7.8	1.6e-09	38.0	7.8	3.8	3	1	0	3	3	3	2	Polysaccharide	biosynthesis	C-terminal	domain
MurJ	PF03023.14	gi|336252054|ref|YP_004586022.1|	-	2.1e-06	26.6	7.3	5.4e-06	25.3	7.3	1.6	1	0	0	1	1	1	1	Lipid	II	flippase	MurJ
HalOD1	PF18545.1	gi|336252055|ref|YP_004586023.1|	-	6.2e-20	71.3	1.3	6.9e-20	71.1	1.3	1.1	1	0	0	1	1	1	1	Halobacterial	output	domain	1
Cdc6_C	PF09079.11	gi|336252056|ref|YP_004586024.1|	-	4.3e-18	65.1	0.2	1.3e-17	63.6	0.2	1.9	1	0	0	1	1	1	1	CDC6,	C	terminal	winged	helix	domain
AAA_22	PF13401.6	gi|336252056|ref|YP_004586024.1|	-	1.4e-14	54.5	0.1	3.9e-14	53.1	0.0	1.7	2	0	0	2	2	2	1	AAA	domain
AAA_16	PF13191.6	gi|336252056|ref|YP_004586024.1|	-	1e-10	42.2	2.5	2.2e-09	37.9	0.3	3.1	2	2	1	3	3	3	1	AAA	ATPase	domain
AAA_5	PF07728.14	gi|336252056|ref|YP_004586024.1|	-	4e-06	26.9	0.0	1e-05	25.6	0.0	1.7	1	0	0	1	1	1	1	AAA	domain	(dynein-related	subfamily)
Sigma54_activat	PF00158.26	gi|336252056|ref|YP_004586024.1|	-	5.9e-06	26.1	0.2	1.1e-05	25.2	0.0	1.6	2	0	0	2	2	1	1	Sigma-54	interaction	domain
AAA	PF00004.29	gi|336252056|ref|YP_004586024.1|	-	1.1e-05	25.9	0.1	2.9e-05	24.5	0.1	1.8	1	1	0	1	1	1	1	ATPase	family	associated	with	various	cellular	activities	(AAA)
TniB	PF05621.11	gi|336252056|ref|YP_004586024.1|	-	9.5e-05	21.9	0.0	0.00019	20.9	0.0	1.5	1	0	0	1	1	1	1	Bacterial	TniB	protein
NB-ARC	PF00931.22	gi|336252056|ref|YP_004586024.1|	-	0.0001	21.6	0.0	0.00017	20.9	0.0	1.3	1	0	0	1	1	1	1	NB-ARC	domain
NACHT	PF05729.12	gi|336252056|ref|YP_004586024.1|	-	0.00018	21.5	0.0	0.00034	20.6	0.0	1.5	1	0	0	1	1	1	1	NACHT	domain
AAA_7	PF12775.7	gi|336252056|ref|YP_004586024.1|	-	0.00024	20.7	0.0	0.00042	19.9	0.0	1.3	1	0	0	1	1	1	1	P-loop	containing	dynein	motor	region
RNA_helicase	PF00910.22	gi|336252056|ref|YP_004586024.1|	-	0.0003	21.1	0.0	0.00061	20.1	0.0	1.5	1	0	0	1	1	1	1	RNA	helicase
Sigma54_activ_2	PF14532.6	gi|336252056|ref|YP_004586024.1|	-	0.00038	20.6	0.0	0.002	18.2	0.0	2.1	1	1	0	1	1	1	1	Sigma-54	interaction	domain
AAA_24	PF13479.6	gi|336252056|ref|YP_004586024.1|	-	0.00056	19.7	0.3	0.00096	18.9	0.3	1.3	1	0	0	1	1	1	1	AAA	domain
DUF815	PF05673.13	gi|336252056|ref|YP_004586024.1|	-	0.00077	18.7	0.0	0.0014	17.8	0.0	1.3	1	0	0	1	1	1	1	Protein	of	unknown	function	(DUF815)
Mg_chelatase	PF01078.21	gi|336252056|ref|YP_004586024.1|	-	0.0059	16.0	0.0	0.011	15.1	0.0	1.4	1	0	0	1	1	1	1	Magnesium	chelatase,	subunit	ChlI
DEAD	PF00270.29	gi|336252056|ref|YP_004586024.1|	-	0.007	16.2	0.9	0.62	9.8	0.9	2.3	1	1	0	1	1	1	1	DEAD/DEAH	box	helicase
AAA_2	PF07724.14	gi|336252056|ref|YP_004586024.1|	-	0.0077	16.4	0.1	0.013	15.6	0.1	1.3	1	0	0	1	1	1	1	AAA	domain	(Cdc48	subfamily)
DUF2075	PF09848.9	gi|336252056|ref|YP_004586024.1|	-	0.014	14.7	0.0	0.018	14.3	0.0	1.2	1	0	0	1	1	1	0	Uncharacterized	conserved	protein	(DUF2075)
PhoH	PF02562.16	gi|336252056|ref|YP_004586024.1|	-	0.018	14.5	1.7	3	7.2	1.7	2.8	1	1	0	1	1	1	0	PhoH-like	protein
ATPase_2	PF01637.18	gi|336252056|ref|YP_004586024.1|	-	0.025	14.5	0.0	0.048	13.6	0.0	1.5	1	0	0	1	1	1	0	ATPase	domain	predominantly	from	Archaea
AAA_10	PF12846.7	gi|336252056|ref|YP_004586024.1|	-	0.084	11.8	0.0	0.14	11.0	0.0	1.3	1	0	0	1	1	1	0	AAA-like	domain
AAA_18	PF13238.6	gi|336252056|ref|YP_004586024.1|	-	0.087	13.4	0.0	0.19	12.3	0.0	1.7	1	0	0	1	1	1	0	AAA	domain
ATPase	PF06745.13	gi|336252056|ref|YP_004586024.1|	-	0.098	12.0	0.0	0.21	10.9	0.0	1.5	1	0	0	1	1	1	0	KaiC
DUF87	PF01935.17	gi|336252056|ref|YP_004586024.1|	-	0.13	12.4	0.4	0.35	10.9	0.1	1.8	1	1	1	2	2	2	0	Helicase	HerA,	central	domain
AAA_lid_4	PF17864.1	gi|336252056|ref|YP_004586024.1|	-	0.48	10.2	2.9	0.78	9.5	1.0	2.1	2	0	0	2	2	2	0	RuvB	AAA	lid	domain
MCM	PF00493.23	gi|336252056|ref|YP_004586024.1|	-	0.5	9.4	2.4	18	4.3	0.0	2.6	1	1	0	2	2	2	0	MCM	P-loop	domain
Peptidase_S8	PF00082.22	gi|336252057|ref|YP_004586025.1|	-	2.1e-34	119.2	5.3	3.1e-34	118.6	5.3	1.3	1	0	0	1	1	1	1	Subtilase	family
Peptidase_M14	PF00246.24	gi|336252058|ref|YP_004586026.1|	-	2.8e-17	63.5	0.0	4.1e-17	62.9	0.0	1.2	1	0	0	1	1	1	1	Zinc	carboxypeptidase
DUF4177	PF13783.6	gi|336252059|ref|YP_004586027.1|	-	1.1e-06	28.9	0.1	1.6e-06	28.3	0.1	1.3	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4177)
YojJ	PF10372.9	gi|336252060|ref|YP_004586028.1|	-	0.03	14.4	0.0	2.8	8.1	0.0	2.4	2	0	0	2	2	2	0	Bacterial	membrane-spanning	protein	N-terminus
TAT_signal	PF10518.9	gi|336252061|ref|YP_004586029.1|	-	0.25	11.2	2.6	0.46	10.4	2.6	1.5	1	0	0	1	1	1	0	TAT	(twin-arginine	translocation)	pathway	signal	sequence
TRAM	PF01938.20	gi|336252063|ref|YP_004586031.1|	-	3.2e-13	49.5	2.5	4.7e-13	48.9	2.5	1.3	1	0	0	1	1	1	1	TRAM	domain
Red1	PF07964.11	gi|336252063|ref|YP_004586031.1|	-	0.65	8.2	4.3	0.79	7.9	4.3	1.0	1	0	0	1	1	1	0	Rec10	/	Red1
DNA_pol_B_exo1	PF03104.19	gi|336252064|ref|YP_004586032.1|	-	8.2e-05	21.9	0.1	0.00026	20.3	0.1	1.8	1	1	0	1	1	1	1	DNA	polymerase	family	B,	exonuclease	domain
RNase_H_2	PF13482.6	gi|336252064|ref|YP_004586032.1|	-	0.0038	17.2	0.5	0.051	13.6	0.1	2.6	2	1	1	3	3	3	1	RNase_H	superfamily
Pro_CA	PF00484.19	gi|336252065|ref|YP_004586033.1|	-	4e-14	53.2	0.0	5.9e-14	52.6	0.0	1.3	1	0	0	1	1	1	1	Carbonic	anhydrase
ABM	PF03992.16	gi|336252066|ref|YP_004586034.1|	-	2.5e-17	62.7	2.7	3.2e-17	62.4	2.7	1.1	1	0	0	1	1	1	1	Antibiotic	biosynthesis	monooxygenase
AhpC-TSA	PF00578.21	gi|336252067|ref|YP_004586035.1|	-	1.3e-21	76.8	0.0	1.5e-21	76.6	0.0	1.1	1	0	0	1	1	1	1	AhpC/TSA	family
Redoxin	PF08534.10	gi|336252067|ref|YP_004586035.1|	-	4e-19	68.8	0.0	4.7e-19	68.5	0.0	1.0	1	0	0	1	1	1	1	Redoxin
HlyD_2	PF12700.7	gi|336252067|ref|YP_004586035.1|	-	0.015	14.1	0.0	0.02	13.7	0.0	1.1	1	0	0	1	1	1	0	HlyD	family	secretion	protein
Top6b_C	PF18000.1	gi|336252067|ref|YP_004586035.1|	-	0.046	13.9	0.0	0.065	13.4	0.0	1.2	1	0	0	1	1	1	0	Type	2	DNA	topoisomerase	6	subunit	B	C-terminal	domain
Pyr_redox_2	PF07992.14	gi|336252068|ref|YP_004586036.1|	-	1.7e-60	204.7	3.7	1.7e-60	204.7	3.7	1.6	2	0	0	2	2	2	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox	PF00070.27	gi|336252068|ref|YP_004586036.1|	-	5.4e-21	75.0	6.0	1.2e-17	64.2	0.8	3.4	3	0	0	3	3	3	1	Pyridine	nucleotide-disulphide	oxidoreductase
Pyr_redox_3	PF13738.6	gi|336252068|ref|YP_004586036.1|	-	1.4e-15	57.3	0.5	9.5e-09	34.9	0.1	3.1	3	0	0	3	3	3	3	Pyridine	nucleotide-disulphide	oxidoreductase
NAD_binding_8	PF13450.6	gi|336252068|ref|YP_004586036.1|	-	9.8e-10	38.5	0.9	0.00098	19.3	0.1	2.6	2	0	0	2	2	2	2	NAD(P)-binding	Rossmann-like	domain
Pyr_redox_dim	PF02852.22	gi|336252068|ref|YP_004586036.1|	-	8.1e-08	32.5	0.0	2.1e-07	31.2	0.0	1.7	1	0	0	1	1	1	1	Pyridine	nucleotide-disulphide	oxidoreductase,	dimerisation	domain
HI0933_like	PF03486.14	gi|336252068|ref|YP_004586036.1|	-	6.1e-07	28.5	4.7	0.069	11.8	0.1	4.1	3	1	1	4	4	4	3	HI0933-like	protein
3HCDH_N	PF02737.18	gi|336252068|ref|YP_004586036.1|	-	2.2e-05	24.4	0.6	2.2e-05	24.4	0.6	2.3	3	0	0	3	3	3	1	3-hydroxyacyl-CoA	dehydrogenase,	NAD	binding	domain
DAO	PF01266.24	gi|336252068|ref|YP_004586036.1|	-	0.00014	21.6	10.9	1.2	8.7	4.9	4.1	3	1	0	3	3	3	2	FAD	dependent	oxidoreductase
NAD_binding_2	PF03446.15	gi|336252068|ref|YP_004586036.1|	-	0.00045	20.4	0.3	0.0018	18.4	0.1	2.0	2	0	0	2	2	2	1	NAD	binding	domain	of	6-phosphogluconate	dehydrogenase
2-Hacid_dh_C	PF02826.19	gi|336252068|ref|YP_004586036.1|	-	0.0091	15.4	0.0	0.035	13.4	0.0	1.9	2	0	0	2	2	2	1	D-isomer	specific	2-hydroxyacid	dehydrogenase,	NAD	binding	domain
DpaA_N	PF16924.5	gi|336252068|ref|YP_004586036.1|	-	0.0096	16.0	0.3	3.1	7.9	0.1	3.2	3	0	0	3	3	3	1	Dipicolinate	synthase	subunit	A	N-terminal	domain
Lycopene_cycl	PF05834.12	gi|336252068|ref|YP_004586036.1|	-	0.018	14.1	3.1	0.94	8.5	0.0	3.0	2	1	1	3	3	3	0	Lycopene	cyclase	protein
UDPG_MGDP_dh_N	PF03721.14	gi|336252068|ref|YP_004586036.1|	-	0.033	13.8	2.8	0.17	11.4	1.1	2.6	2	1	0	2	2	2	0	UDP-glucose/GDP-mannose	dehydrogenase	family,	NAD	binding	domain
NAD_Gly3P_dh_N	PF01210.23	gi|336252068|ref|YP_004586036.1|	-	0.054	13.5	0.0	0.13	12.2	0.0	1.7	1	0	0	1	1	1	0	NAD-dependent	glycerol-3-phosphate	dehydrogenase	N-terminus
FAD_oxidored	PF12831.7	gi|336252068|ref|YP_004586036.1|	-	0.059	12.7	0.1	0.059	12.7	0.1	3.1	2	1	0	3	3	3	0	FAD	dependent	oxidoreductase
Amino_oxidase	PF01593.24	gi|336252068|ref|YP_004586036.1|	-	0.064	12.5	0.3	6.2	6.0	0.0	2.3	2	0	0	2	2	2	0	Flavin	containing	amine	oxidoreductase
GIDA	PF01134.22	gi|336252068|ref|YP_004586036.1|	-	0.065	12.3	5.8	0.13	11.3	0.6	2.7	2	1	0	2	2	2	0	Glucose	inhibited	division	protein	A
TrkA_N	PF02254.18	gi|336252068|ref|YP_004586036.1|	-	0.097	12.9	1.5	14	6.0	0.3	3.6	3	1	0	3	3	3	0	TrkA-N	domain
NAD_binding_9	PF13454.6	gi|336252068|ref|YP_004586036.1|	-	0.13	12.3	8.4	34	4.4	0.0	4.2	2	2	1	4	4	4	0	FAD-NAD(P)-binding
NAD_binding_7	PF13241.6	gi|336252068|ref|YP_004586036.1|	-	0.18	12.2	1.8	4.6	7.7	0.1	2.6	2	1	0	2	2	2	0	Putative	NAD(P)-binding
RNA_POL_M_15KD	PF02150.16	gi|336252069|ref|YP_004586037.1|	-	7.9e-08	32.0	4.4	1.6e-07	31.1	1.9	2.3	2	0	0	2	2	2	1	RNA	polymerases	M/15	Kd	subunit
OrfB_Zn_ribbon	PF07282.11	gi|336252069|ref|YP_004586037.1|	-	7.2e-05	22.6	7.1	0.0014	18.5	1.9	2.2	2	0	0	2	2	2	2	Putative	transposase	DNA-binding	domain
TFIIS_C	PF01096.18	gi|336252069|ref|YP_004586037.1|	-	0.0087	15.9	12.3	0.0095	15.8	0.6	4.0	4	0	0	4	4	4	1	Transcription	factor	S-II	(TFIIS)
zf-RRN7	PF11781.8	gi|336252069|ref|YP_004586037.1|	-	0.0098	15.6	7.1	8.3	6.2	0.2	4.3	4	0	0	4	4	4	1	Zinc-finger	of	RNA-polymerase	I-specific	TFIIB,	Rrn7
DZR	PF12773.7	gi|336252069|ref|YP_004586037.1|	-	0.011	15.8	1.5	0.011	15.8	1.5	2.5	2	1	0	2	2	2	0	Double	zinc	ribbon
zf-ribbon_3	PF13248.6	gi|336252069|ref|YP_004586037.1|	-	0.044	13.2	6.6	0.23	10.9	0.9	2.9	3	0	0	3	3	3	0	zinc-ribbon	domain
PhnA_Zn_Ribbon	PF08274.12	gi|336252069|ref|YP_004586037.1|	-	0.092	12.7	5.3	3.4	7.7	0.0	3.3	3	1	0	3	3	3	0	PhnA	Zinc-Ribbon
zf_UBZ	PF18439.1	gi|336252069|ref|YP_004586037.1|	-	0.16	11.6	5.9	1.6	8.4	0.1	3.2	3	0	0	3	3	3	0	Ubiquitin-Binding	Zinc	Finger
zf-UBP	PF02148.19	gi|336252069|ref|YP_004586037.1|	-	0.37	11.2	5.3	4.8	7.6	1.0	2.2	2	0	0	2	2	2	0	Zn-finger	in	ubiquitin-hydrolases	and	other	protein
C1_1	PF00130.22	gi|336252069|ref|YP_004586037.1|	-	0.65	9.9	6.6	0.42	10.5	2.9	2.2	2	0	0	2	2	2	0	Phorbol	esters/diacylglycerol	binding	domain	(C1	domain)
zf-C4pol	PF14260.6	gi|336252069|ref|YP_004586037.1|	-	1.3	9.6	8.4	0.38	11.3	4.9	1.9	2	0	0	2	2	2	0	C4-type	zinc-finger	of	DNA	polymerase	delta
Rubredoxin_2	PF18073.1	gi|336252069|ref|YP_004586037.1|	-	1.3	8.8	9.9	19	5.1	0.3	3.3	2	1	0	2	2	2	0	Rubredoxin	metal	binding	domain
DUF2318	PF10080.9	gi|336252069|ref|YP_004586037.1|	-	4.1	7.6	7.3	2.8	8.1	2.0	2.5	1	1	1	2	2	2	0	Predicted	membrane	protein	(DUF2318)
zinc-ribbons_6	PF07191.12	gi|336252069|ref|YP_004586037.1|	-	9.6	6.3	10.8	0.42	10.6	2.4	2.4	2	1	0	2	2	2	0	zinc-ribbons
DUF4398	PF14346.6	gi|336252070|ref|YP_004586038.1|	-	0.0015	19.1	9.7	0.0031	18.1	9.7	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4398)
Glyco_hydro_42M	PF08532.10	gi|336252070|ref|YP_004586038.1|	-	0.03	13.8	0.0	0.071	12.6	0.0	1.5	1	0	0	1	1	1	0	Beta-galactosidase	trimerisation	domain
PGF-CTERM	PF18204.1	gi|336252070|ref|YP_004586038.1|	-	0.039	13.9	0.1	0.067	13.2	0.1	1.4	1	0	0	1	1	1	0	PGF-CTERM	motif
DUF2564	PF10819.8	gi|336252070|ref|YP_004586038.1|	-	0.38	11.2	3.7	0.31	11.4	1.6	1.9	1	1	1	2	2	2	0	Protein	of	unknown	function	(DUF2564)
HATPase_c	PF02518.26	gi|336252071|ref|YP_004586039.1|	-	4.2e-32	111.0	0.0	3.1e-30	104.9	0.0	2.3	2	0	0	2	2	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HisKA	PF00512.25	gi|336252071|ref|YP_004586039.1|	-	7.2e-13	48.4	13.0	2.3e-12	46.8	0.2	4.3	3	1	1	4	4	4	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_4	PF08448.10	gi|336252071|ref|YP_004586039.1|	-	4.7e-11	42.9	0.0	1.2e-10	41.6	0.0	1.8	1	0	0	1	1	1	1	PAS	fold
HisKA_4TM	PF16926.5	gi|336252071|ref|YP_004586039.1|	-	7e-07	28.9	0.0	1.9e-06	27.5	0.0	1.7	1	0	0	1	1	1	1	Archaeal	4TM	region	of	histidine	kinase
HATPase_c_2	PF13581.6	gi|336252071|ref|YP_004586039.1|	-	5.4e-05	23.1	0.1	0.00014	21.8	0.1	1.8	1	0	0	1	1	1	1	Histidine	kinase-like	ATPase	domain
Rotamase	PF00639.21	gi|336252071|ref|YP_004586039.1|	-	0.004	18.1	2.2	0.9	10.5	0.3	2.9	3	0	0	3	3	2	1	PPIC-type	PPIASE	domain
HATPase_c_5	PF14501.6	gi|336252071|ref|YP_004586039.1|	-	0.0045	16.9	0.0	0.0093	15.9	0.0	1.5	1	0	0	1	1	1	1	GHKL	domain
ZapB	PF06005.12	gi|336252071|ref|YP_004586039.1|	-	0.037	14.5	3.6	0.037	14.5	3.6	2.8	3	0	0	3	3	2	0	Cell	division	protein	ZapB
PAS_7	PF12860.7	gi|336252071|ref|YP_004586039.1|	-	0.039	14.1	1.3	0.16	12.2	0.1	2.3	2	0	0	2	2	2	0	PAS	fold
OmpH	PF03938.14	gi|336252071|ref|YP_004586039.1|	-	0.041	14.2	12.3	0.64	10.4	2.2	2.5	2	0	0	2	2	2	0	Outer	membrane	protein	(OmpH-like)
bZIP_1	PF00170.21	gi|336252071|ref|YP_004586039.1|	-	0.047	13.8	7.4	0.99	9.5	0.6	2.5	2	0	0	2	2	2	0	bZIP	transcription	factor
dCache_3	PF14827.6	gi|336252071|ref|YP_004586039.1|	-	0.05	13.2	4.7	0.89	9.2	0.0	2.8	2	1	1	3	3	3	0	Double	sensory	domain	of	two-component	sensor	kinase
FlgN	PF05130.12	gi|336252071|ref|YP_004586039.1|	-	0.067	13.7	4.2	2	8.9	0.6	2.6	3	0	0	3	3	2	0	FlgN	protein
DUF3618	PF12277.8	gi|336252071|ref|YP_004586039.1|	-	0.078	13.2	1.5	0.19	12.0	1.5	1.7	1	0	0	1	1	1	0	Protein	of	unknown	function	(DUF3618)
GAS	PF13851.6	gi|336252071|ref|YP_004586039.1|	-	0.11	11.9	7.8	1.9	7.8	1.7	2.2	2	0	0	2	2	2	0	Growth-arrest	specific	micro-tubule	binding
H-kinase_dim	PF02895.14	gi|336252071|ref|YP_004586039.1|	-	0.19	12.2	3.5	8.7	6.8	0.4	2.9	3	0	0	3	3	3	0	Signal	transducing	histidine	kinase,	homodimeric	domain
GrpE	PF01025.19	gi|336252071|ref|YP_004586039.1|	-	0.19	11.4	6.0	3.4	7.3	0.1	2.5	2	0	0	2	2	2	0	GrpE
Ax_dynein_light	PF10211.9	gi|336252071|ref|YP_004586039.1|	-	0.21	11.5	4.8	0.63	10.0	0.5	2.4	2	0	0	2	2	2	0	Axonemal	dynein	light	chain
KxDL	PF10241.9	gi|336252071|ref|YP_004586039.1|	-	0.23	11.8	3.9	3.3	8.1	0.9	2.6	2	0	0	2	2	2	0	Uncharacterized	conserved	protein
bZIP_2	PF07716.15	gi|336252071|ref|YP_004586039.1|	-	0.36	10.9	19.3	0.34	11.0	3.4	2.6	3	0	0	3	3	2	0	Basic	region	leucine	zipper
BLOC1_2	PF10046.9	gi|336252071|ref|YP_004586039.1|	-	0.49	10.7	5.1	4.8	7.6	0.4	2.5	2	0	0	2	2	2	0	Biogenesis	of	lysosome-related	organelles	complex-1	subunit	2
TINF2_N	PF14973.6	gi|336252071|ref|YP_004586039.1|	-	0.52	10.7	7.6	11	6.4	0.5	3.3	3	1	0	3	3	3	0	TERF1-interacting	nuclear	factor	2	N-terminus
vATP-synt_E	PF01991.18	gi|336252071|ref|YP_004586039.1|	-	0.54	9.6	5.8	0.94	8.9	0.6	2.8	3	0	0	3	3	3	0	ATP	synthase	(E/31	kDa)	subunit
DivIC	PF04977.15	gi|336252071|ref|YP_004586039.1|	-	1.1	9.1	12.3	1.5	8.6	3.9	2.6	2	0	0	2	2	2	0	Septum	formation	initiator
DUF4298	PF14131.6	gi|336252071|ref|YP_004586039.1|	-	1.4	9.0	6.4	0.53	10.3	1.5	2.3	2	0	0	2	2	2	0	Domain	of	unknown	function	(DUF4298)
Snapin_Pallidin	PF14712.6	gi|336252071|ref|YP_004586039.1|	-	1.5	9.3	5.8	1.7	9.1	1.5	2.5	2	0	0	2	2	2	0	Snapin/Pallidin
TMF_TATA_bd	PF12325.8	gi|336252071|ref|YP_004586039.1|	-	1.8	8.8	11.0	1.5	9.0	1.7	2.8	3	0	0	3	3	2	0	TATA	element	modulatory	factor	1	TATA	binding
ADIP	PF11559.8	gi|336252071|ref|YP_004586039.1|	-	2.2	8.3	8.7	3.9	7.5	0.3	2.2	2	0	0	2	2	2	0	Afadin-	and	alpha	-actinin-Binding
PilO	PF04350.13	gi|336252071|ref|YP_004586039.1|	-	2.4	8.3	6.9	0.27	11.4	0.3	2.3	3	0	0	3	3	2	0	Pilus	assembly	protein,	PilO
ABC_tran_CTD	PF16326.5	gi|336252071|ref|YP_004586039.1|	-	3.6	7.9	15.1	1.9	8.8	4.8	2.5	2	0	0	2	2	2	0	ABC	transporter	C-terminal	domain
Tox-ODYAM1	PF15642.6	gi|336252071|ref|YP_004586039.1|	-	5.6	5.8	6.5	10	5.0	0.7	2.3	1	1	1	2	2	2	0	Toxin	in	Odyssella	and	Amoebophilus
DUF2203	PF09969.9	gi|336252071|ref|YP_004586039.1|	-	5.8	7.7	6.3	10	6.9	0.2	3.0	2	1	0	3	3	3	0	Uncharacterized	conserved	protein	(DUF2203)
HNOBA	PF07701.14	gi|336252071|ref|YP_004586039.1|	-	6.1	6.2	9.4	6.2	6.2	0.4	2.3	2	0	0	2	2	2	0	Heme	NO	binding	associated
His_kinase	PF06580.13	gi|336252071|ref|YP_004586039.1|	-	8.1	6.9	6.4	1.5	9.2	1.1	2.6	4	0	0	4	4	2	0	Histidine	kinase
PAS_4	PF08448.10	gi|336252072|ref|YP_004586040.1|	-	8.3e-53	177.3	21.3	2e-12	47.4	0.2	6.6	6	0	0	6	6	6	6	PAS	fold
PAS_3	PF08447.12	gi|336252072|ref|YP_004586040.1|	-	3.1e-33	113.9	8.0	1.8e-15	57.0	0.0	6.8	7	1	0	7	7	6	2	PAS	fold
HATPase_c	PF02518.26	gi|336252072|ref|YP_004586040.1|	-	9e-30	103.5	0.0	3.7e-29	101.5	0.0	2.1	2	0	0	2	2	1	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_9	PF13426.7	gi|336252072|ref|YP_004586040.1|	-	1.4e-28	99.2	1.4	0.00011	22.4	0.0	6.8	7	0	0	7	7	6	6	PAS	domain
PAS_8	PF13188.7	gi|336252072|ref|YP_004586040.1|	-	4.7e-20	71.2	1.3	6.8e-08	32.4	0.0	6.2	6	0	0	6	6	6	2	PAS	domain
PAS	PF00989.25	gi|336252072|ref|YP_004586040.1|	-	9e-19	67.5	3.2	0.00067	19.6	0.0	7.0	6	1	0	6	6	6	3	PAS	fold
HisKA	PF00512.25	gi|336252072|ref|YP_004586040.1|	-	6.5e-11	42.1	0.1	6.5e-11	42.1	0.1	4.2	4	0	0	4	4	3	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_10	PF13596.6	gi|336252072|ref|YP_004586040.1|	-	1.5e-09	38.4	0.0	0.36	11.4	0.0	6.8	7	0	0	7	7	7	1	PAS	domain
PAS_7	PF12860.7	gi|336252072|ref|YP_004586040.1|	-	4.5e-07	30.0	7.5	0.0025	18.0	0.1	6.2	5	1	0	5	5	5	1	PAS	fold
HTH_11	PF08279.12	gi|336252072|ref|YP_004586040.1|	-	1.2e-06	28.4	0.0	2.7e-06	27.2	0.0	1.6	1	0	0	1	1	1	1	HTH	domain
HTH_20	PF12840.7	gi|336252072|ref|YP_004586040.1|	-	3.3e-06	27.1	0.0	9.6e-06	25.6	0.0	1.8	1	0	0	1	1	1	1	Helix-turn-helix	domain
HATPase_c_5	PF14501.6	gi|336252072|ref|YP_004586040.1|	-	6.5e-06	26.0	0.0	1.7e-05	24.7	0.0	1.7	1	0	0	1	1	1	1	GHKL	domain
TrmB	PF01978.19	gi|336252072|ref|YP_004586040.1|	-	1.2e-05	25.1	0.0	2.9e-05	23.8	0.0	1.6	1	0	0	1	1	1	1	Sugar-specific	transcriptional	regulator	TrmB
HTH_23	PF13384.6	gi|336252072|ref|YP_004586040.1|	-	9.9e-05	22.0	0.0	0.00037	20.2	0.0	2.0	1	0	0	1	1	1	1	Homeodomain-like	domain
HTH_Crp_2	PF13545.6	gi|336252072|ref|YP_004586040.1|	-	0.00014	21.8	0.0	0.00034	20.5	0.0	1.6	1	0	0	1	1	1	1	Crp-like	helix-turn-helix	domain
HTH_29	PF13551.6	gi|336252072|ref|YP_004586040.1|	-	0.00094	19.2	0.0	0.0028	17.6	0.0	1.8	1	0	0	1	1	1	1	Winged	helix-turn	helix
HTH_17	PF12728.7	gi|336252072|ref|YP_004586040.1|	-	0.0027	17.9	0.0	0.0078	16.4	0.0	1.8	1	0	0	1	1	1	1	Helix-turn-helix	domain
FaeA	PF04703.12	gi|336252072|ref|YP_004586040.1|	-	0.0065	16.8	0.0	0.016	15.6	0.0	1.6	1	0	0	1	1	1	1	FaeA-like	protein
sCache_3_3	PF17202.4	gi|336252072|ref|YP_004586040.1|	-	0.0099	16.3	0.0	10	6.6	0.0	3.6	3	0	0	3	3	3	0	Single	cache	domain	3
Pro_Al_protease	PF02983.14	gi|336252072|ref|YP_004586040.1|	-	0.013	15.5	0.2	0.034	14.2	0.2	1.7	1	0	0	1	1	1	0	Alpha-lytic	protease	prodomain
Fe_dep_repress	PF01325.19	gi|336252072|ref|YP_004586040.1|	-	0.024	14.8	0.0	0.056	13.6	0.0	1.6	1	0	0	1	1	1	0	Iron	dependent	repressor,	N-terminal	DNA	binding	domain
HATPase_c_3	PF13589.6	gi|336252072|ref|YP_004586040.1|	-	0.028	14.2	0.0	0.067	13.0	0.0	1.5	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
HTH_22	PF13309.6	gi|336252072|ref|YP_004586040.1|	-	0.036	14.1	0.0	0.094	12.8	0.0	1.7	1	0	0	1	1	1	0	HTH	domain
HTH_36	PF13730.6	gi|336252072|ref|YP_004586040.1|	-	0.036	14.0	0.0	0.071	13.1	0.0	1.4	1	0	0	1	1	1	0	Helix-turn-helix	domain
YopX	PF09643.10	gi|336252072|ref|YP_004586040.1|	-	0.041	14.0	0.0	0.33	11.0	0.0	2.4	2	0	0	2	2	2	0	YopX	protein
SgrR_N	PF12793.7	gi|336252072|ref|YP_004586040.1|	-	0.045	14.0	0.0	0.13	12.5	0.0	1.7	1	0	0	1	1	1	0	Sugar	transport-related	sRNA	regulator	N-term
HTH_7	PF02796.15	gi|336252072|ref|YP_004586040.1|	-	0.053	13.6	0.0	0.16	12.1	0.0	1.8	1	0	0	1	1	1	0	Helix-turn-helix	domain	of	resolvase
Sigma70_r4_2	PF08281.12	gi|336252072|ref|YP_004586040.1|	-	0.054	13.2	0.0	0.16	11.6	0.0	1.8	1	0	0	1	1	1	0	Sigma-70,	region	4
MarR_2	PF12802.7	gi|336252072|ref|YP_004586040.1|	-	0.086	12.7	0.1	0.25	11.3	0.1	1.8	1	0	0	1	1	1	0	MarR	family
GerE	PF00196.19	gi|336252072|ref|YP_004586040.1|	-	0.11	12.0	0.0	0.25	10.9	0.0	1.5	1	0	0	1	1	1	0	Bacterial	regulatory	proteins,	luxR	family
UPF0149	PF03695.13	gi|336252072|ref|YP_004586040.1|	-	0.21	11.9	5.7	1.5	9.1	0.1	4.2	4	1	0	4	4	3	0	Uncharacterised	protein	family	(UPF0149)
dCache_3	PF14827.6	gi|336252072|ref|YP_004586040.1|	-	0.25	10.9	0.8	19	4.8	0.0	4.1	5	2	2	7	7	6	0	Double	sensory	domain	of	two-component	sensor	kinase
PAP2	PF01569.21	gi|336252073|ref|YP_004586041.1|	-	5.5	6.8	19.8	0.028	14.2	6.6	2.8	3	0	0	3	3	3	0	PAP2	superfamily
ABC2_membrane	PF01061.24	gi|336252074|ref|YP_004586042.1|	-	8.4e-31	107.0	18.1	1.1e-30	106.7	18.1	1.1	1	0	0	1	1	1	1	ABC-2	type	transporter
ABC2_membrane_3	PF12698.7	gi|336252074|ref|YP_004586042.1|	-	4.2e-17	62.3	16.6	4.2e-17	62.3	16.6	1.4	1	1	0	1	1	1	1	ABC-2	family	transporter	protein
ABC2_membrane_2	PF12679.7	gi|336252074|ref|YP_004586042.1|	-	0.12	11.7	21.3	0.22	10.7	21.2	1.5	1	1	0	1	1	1	0	ABC-2	family	transporter	protein
ABC_tran	PF00005.27	gi|336252075|ref|YP_004586043.1|	-	5.1e-30	104.8	0.0	7.2e-30	104.3	0.0	1.2	1	0	0	1	1	1	1	ABC	transporter
AAA_21	PF13304.6	gi|336252075|ref|YP_004586043.1|	-	4.1e-15	56.4	0.8	1.2e-10	41.7	0.0	2.2	1	1	1	2	2	2	2	AAA	domain,	putative	AbiEii	toxin,	Type	IV	TA	system
DUF4162	PF13732.6	gi|336252075|ref|YP_004586043.1|	-	2.5e-09	37.7	0.0	4.9e-09	36.8	0.0	1.5	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4162)
AAA_29	PF13555.6	gi|336252075|ref|YP_004586043.1|	-	0.0051	16.5	0.4	0.013	15.3	0.4	1.6	1	0	0	1	1	1	1	P-loop	containing	region	of	AAA	domain
AAA_16	PF13191.6	gi|336252075|ref|YP_004586043.1|	-	0.051	14.0	0.3	0.14	12.5	0.1	1.8	1	1	1	2	2	2	0	AAA	ATPase	domain
AAA	PF00004.29	gi|336252075|ref|YP_004586043.1|	-	0.067	13.6	0.0	0.75	10.2	0.0	2.3	1	1	0	1	1	1	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
SMC_N	PF02463.19	gi|336252075|ref|YP_004586043.1|	-	0.076	12.4	0.2	3.1	7.2	0.0	2.1	2	0	0	2	2	2	0	RecF/RecN/SMC	N	terminal	domain
AAA_15	PF13175.6	gi|336252075|ref|YP_004586043.1|	-	0.082	12.6	0.0	2.6	7.7	0.0	2.0	2	0	0	2	2	2	0	AAA	ATPase	domain
AAA_22	PF13401.6	gi|336252075|ref|YP_004586043.1|	-	0.11	12.8	0.1	0.58	10.4	0.1	2.1	1	1	1	2	2	2	0	AAA	domain
SbcCD_C	PF13558.6	gi|336252075|ref|YP_004586043.1|	-	0.11	12.7	0.0	0.3	11.4	0.0	1.8	1	1	0	1	1	1	0	Putative	exonuclease	SbcCD,	C	subunit
Zeta_toxin	PF06414.12	gi|336252075|ref|YP_004586043.1|	-	0.12	11.7	0.0	0.21	10.8	0.0	1.3	1	0	0	1	1	1	0	Zeta	toxin
AAA_23	PF13476.6	gi|336252075|ref|YP_004586043.1|	-	0.32	11.5	3.1	0.49	10.9	3.1	1.5	1	1	0	1	1	1	0	AAA	domain
HTH_10	PF04967.12	gi|336252076|ref|YP_004586044.1|	-	8.1e-19	67.2	0.1	1.3e-18	66.6	0.1	1.3	1	0	0	1	1	1	1	HTH	DNA	binding	domain
BAT	PF15915.5	gi|336252076|ref|YP_004586044.1|	-	2e-12	47.2	1.0	2e-12	47.2	1.0	1.9	1	1	1	2	2	2	1	GAF	and	HTH_10	associated	domain
HTH_24	PF13412.6	gi|336252076|ref|YP_004586044.1|	-	0.0074	15.8	0.1	0.13	11.8	0.0	2.2	2	0	0	2	2	2	1	Winged	helix-turn-helix	DNA-binding
MarR_2	PF12802.7	gi|336252076|ref|YP_004586044.1|	-	0.0092	15.8	0.1	0.018	14.9	0.1	1.5	1	0	0	1	1	1	1	MarR	family
HTH_AsnC-type	PF13404.6	gi|336252076|ref|YP_004586044.1|	-	0.016	15.0	0.9	0.46	10.4	0.6	2.3	2	0	0	2	2	2	0	AsnC-type	helix-turn-helix	domain
peroxidase	PF00141.23	gi|336252077|ref|YP_004586045.1|	-	3.5e-94	314.8	0.0	3.2e-52	177.5	0.0	2.2	2	0	0	2	2	2	2	Peroxidase
STI1	PF17830.1	gi|336252077|ref|YP_004586045.1|	-	0.018	15.0	0.1	0.053	13.5	0.0	1.8	2	0	0	2	2	2	0	STI1	domain
FGAR-AT_linker	PF18072.1	gi|336252077|ref|YP_004586045.1|	-	1.1	9.9	0.0	1.1	9.9	0.0	3.0	4	0	0	4	4	4	0	Formylglycinamide	ribonucleotide	amidotransferase	linker	domain
Glyco_hydro_3	PF00933.21	gi|336252078|ref|YP_004586046.1|	-	4.1e-79	266.2	0.0	5.3e-79	265.9	0.0	1.1	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	3	N	terminal	domain
Glyco_hydro_3_C	PF01915.22	gi|336252078|ref|YP_004586046.1|	-	4.5e-45	154.1	0.0	8.1e-45	153.3	0.0	1.4	1	0	0	1	1	1	1	Glycosyl	hydrolase	family	3	C-terminal	domain
Fn3-like	PF14310.6	gi|336252078|ref|YP_004586046.1|	-	9.4e-18	64.1	0.1	2.7e-17	62.7	0.1	1.8	1	0	0	1	1	1	1	Fibronectin	type	III-like	domain
DUF11	PF01345.18	gi|336252078|ref|YP_004586046.1|	-	0.007	16.6	0.1	0.023	15.0	0.1	1.8	1	0	0	1	1	1	1	Domain	of	unknown	function	DUF11
CARDB	PF07705.11	gi|336252078|ref|YP_004586046.1|	-	0.16	12.3	0.4	0.37	11.1	0.0	1.7	2	0	0	2	2	2	0	CARDB
Glyco_hydro_3_C	PF01915.22	gi|336252080|ref|YP_004586048.1|	-	3.3e-58	197.0	0.0	8.2e-58	195.7	0.0	1.7	1	1	0	1	1	1	1	Glycosyl	hydrolase	family	3	C-terminal	domain
Glyco_hydro_3	PF00933.21	gi|336252080|ref|YP_004586048.1|	-	1.5e-51	175.7	0.0	2.8e-51	174.8	0.0	1.4	1	1	0	1	1	1	1	Glycosyl	hydrolase	family	3	N	terminal	domain
Fn3-like	PF14310.6	gi|336252080|ref|YP_004586048.1|	-	1.5e-21	76.3	0.3	3.3e-21	75.2	0.3	1.6	1	0	0	1	1	1	1	Fibronectin	type	III-like	domain
Usp	PF00582.26	gi|336252081|ref|YP_004586049.1|	-	8.3e-21	75.0	3.3	1.8e-20	73.9	3.3	1.5	1	1	0	1	1	1	1	Universal	stress	protein	family
MFS_1	PF07690.16	gi|336252082|ref|YP_004586050.1|	-	6.5e-44	150.3	50.7	6.9e-36	123.9	26.6	2.0	1	1	1	2	2	2	2	Major	Facilitator	Superfamily
Sugar_tr	PF00083.24	gi|336252082|ref|YP_004586050.1|	-	6.2e-08	31.9	11.8	6.2e-08	31.9	11.8	2.2	1	1	1	2	2	2	1	Sugar	(and	other)	transporter
MFS_3	PF05977.13	gi|336252082|ref|YP_004586050.1|	-	0.001	17.5	9.4	0.001	17.5	9.4	2.4	2	0	0	2	2	2	2	Transmembrane	secretion	effector
DUF3040	PF11239.8	gi|336252082|ref|YP_004586050.1|	-	0.032	14.5	6.8	0.032	14.5	6.8	6.0	4	3	2	6	6	6	0	Protein	of	unknown	function	(DUF3040)
DUF4188	PF13826.6	gi|336252083|ref|YP_004586051.1|	-	6.9e-09	36.1	0.1	8.1e-09	35.9	0.1	1.1	1	0	0	1	1	1	1	Domain	of	unknown	function	(DUF4188)
ABM	PF03992.16	gi|336252083|ref|YP_004586051.1|	-	2.9e-06	27.3	0.2	3.9e-06	26.9	0.2	1.2	1	0	0	1	1	1	1	Antibiotic	biosynthesis	monooxygenase
DUF3291	PF11695.8	gi|336252083|ref|YP_004586051.1|	-	0.0081	15.9	1.1	0.015	15.0	1.1	1.4	1	1	0	1	1	1	1	Domain	of	unknown	function	(DUF3291)
Cys_Met_Meta_PP	PF01053.20	gi|336252084|ref|YP_004586052.1|	-	2.3e-127	424.7	0.0	2.6e-127	424.5	0.0	1.0	1	0	0	1	1	1	1	Cys/Met	metabolism	PLP-dependent	enzyme
DegT_DnrJ_EryC1	PF01041.17	gi|336252084|ref|YP_004586052.1|	-	1.1e-08	34.7	0.6	4e-08	33.0	0.3	1.9	1	1	0	1	1	1	1	DegT/DnrJ/EryC1/StrS	aminotransferase	family
Beta_elim_lyase	PF01212.21	gi|336252084|ref|YP_004586052.1|	-	2.8e-05	23.5	0.0	6.6e-05	22.3	0.0	1.6	1	1	0	1	1	1	1	Beta-eliminating	lyase
Aminotran_1_2	PF00155.21	gi|336252084|ref|YP_004586052.1|	-	0.00019	20.8	0.0	0.00026	20.3	0.0	1.3	1	0	0	1	1	1	1	Aminotransferase	class	I	and	II
Aminotran_5	PF00266.19	gi|336252084|ref|YP_004586052.1|	-	0.023	13.7	0.0	0.066	12.2	0.0	1.9	1	1	1	2	2	2	0	Aminotransferase	class-V
DUF21	PF01595.20	gi|336252085|ref|YP_004586053.1|	-	4.6e-27	94.9	0.4	6.5e-27	94.4	0.4	1.2	1	0	0	1	1	1	1	Cyclin	M	transmembrane	N-terminal	domain
CBS	PF00571.28	gi|336252085|ref|YP_004586053.1|	-	7.8e-07	29.5	0.6	0.011	16.1	0.0	2.4	1	1	1	2	2	2	2	CBS	domain
malic	PF00390.19	gi|336252085|ref|YP_004586053.1|	-	0.0022	17.8	0.0	0.012	15.4	0.0	2.0	2	0	0	2	2	2	1	Malic	enzyme,	N-terminal	domain
DUF21	PF01595.20	gi|336252086|ref|YP_004586054.1|	-	8.7e-28	97.2	0.0	1.2e-27	96.8	0.0	1.2	1	0	0	1	1	1	1	Cyclin	M	transmembrane	N-terminal	domain
CBS	PF00571.28	gi|336252086|ref|YP_004586054.1|	-	7.8e-07	29.4	1.2	2.8e-05	24.5	0.0	2.3	2	0	0	2	2	2	1	CBS	domain
FHIPEP	PF00771.20	gi|336252086|ref|YP_004586054.1|	-	0.13	10.7	0.2	0.16	10.4	0.2	1.1	1	0	0	1	1	1	0	FHIPEP	family
Usp	PF00582.26	gi|336252087|ref|YP_004586055.1|	-	4.1e-27	95.4	0.5	4.6e-27	95.3	0.5	1.0	1	0	0	1	1	1	1	Universal	stress	protein	family
AP_endonuc_2	PF01261.24	gi|336252087|ref|YP_004586055.1|	-	0.0002	20.8	0.1	0.00026	20.5	0.1	1.1	1	0	0	1	1	1	1	Xylose	isomerase-like	TIM	barrel
Adhesin_P1_N	PF18652.1	gi|336252087|ref|YP_004586055.1|	-	0.018	15.0	2.0	2.3	8.3	0.1	2.3	1	1	0	2	2	2	0	Adhesin	P1	N-terminal	domain
PAS_9	PF13426.7	gi|336252088|ref|YP_004586056.1|	-	6.8e-48	161.2	1.3	1.5e-18	67.0	0.1	4.7	4	0	0	4	4	4	4	PAS	domain
PAS_4	PF08448.10	gi|336252088|ref|YP_004586056.1|	-	2.4e-41	140.4	12.0	1.7e-12	47.6	0.1	4.5	4	0	0	4	4	4	4	PAS	fold
PAS	PF00989.25	gi|336252088|ref|YP_004586056.1|	-	4.8e-36	123.2	3.6	8.5e-14	51.5	0.1	4.5	4	0	0	4	4	4	4	PAS	fold
HATPase_c	PF02518.26	gi|336252088|ref|YP_004586056.1|	-	2.5e-27	95.6	0.0	2e-26	92.7	0.0	2.6	4	0	0	4	4	2	1	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
PAS_3	PF08447.12	gi|336252088|ref|YP_004586056.1|	-	1.7e-26	92.3	6.0	3.4e-07	30.5	0.3	5.2	5	0	0	5	5	5	4	PAS	fold
PAS_8	PF13188.7	gi|336252088|ref|YP_004586056.1|	-	3.6e-14	52.4	0.7	0.00024	21.0	0.1	4.0	3	0	0	3	3	3	3	PAS	domain
PAS_7	PF12860.7	gi|336252088|ref|YP_004586056.1|	-	6.2e-12	45.7	3.7	0.00042	20.5	0.1	4.8	4	1	0	4	4	4	2	PAS	fold
HisKA	PF00512.25	gi|336252088|ref|YP_004586056.1|	-	8.5e-10	38.5	0.0	8.5e-10	38.5	0.0	5.8	6	1	1	7	7	5	1	His	Kinase	A	(phospho-acceptor)	domain
PAS_10	PF13596.6	gi|336252088|ref|YP_004586056.1|	-	2.4e-09	37.7	1.0	0.014	16.0	0.1	4.3	4	0	0	4	4	4	2	PAS	domain
HATPase_c_5	PF14501.6	gi|336252088|ref|YP_004586056.1|	-	0.00012	22.0	0.0	0.00025	20.9	0.0	1.6	1	0	0	1	1	1	1	GHKL	domain
Rbx_binding	PF18113.1	gi|336252088|ref|YP_004586056.1|	-	0.001	18.8	0.2	0.46	10.3	0.0	2.8	3	0	0	3	3	3	1	Rubredoxin	binding	C-terminal	domain
HTH_20	PF12840.7	gi|336252088|ref|YP_004586056.1|	-	0.026	14.6	0.2	0.092	12.8	0.2	2.0	1	0	0	1	1	1	0	Helix-turn-helix	domain
HATPase_c_2	PF13581.6	gi|336252088|ref|YP_004586056.1|	-	0.051	13.5	0.5	0.18	11.8	0.0	2.2	2	0	0	2	2	1	0	Histidine	kinase-like	ATPase	domain
HATPase_c_3	PF13589.6	gi|336252088|ref|YP_004586056.1|	-	0.055	13.3	0.0	0.13	12.1	0.0	1.6	1	0	0	1	1	1	0	Histidine	kinase-,	DNA	gyrase	B-,	and	HSP90-like	ATPase
FERM_f0	PF16511.5	gi|336252088|ref|YP_004586056.1|	-	0.083	13.2	0.3	3.4	8.0	0.1	2.7	2	0	0	2	2	2	0	N-terminal	or	F0	domain	of	Talin-head	FERM
OmpH	PF03938.14	gi|336252088|ref|YP_004586056.1|	-	0.23	11.8	11.4	1.5	9.1	2.1	3.6	3	0	0	3	3	3	0	Outer	membrane	protein	(OmpH-like)
Sec34	PF04136.15	gi|336252088|ref|YP_004586056.1|	-	0.27	11.1	3.6	19	5.1	0.0	3.1	3	0	0	3	3	3	0	Sec34-like	family
UPF0242	PF06785.11	gi|336252088|ref|YP_004586056.1|	-	0.65	10.1	11.0	12	5.9	0.9	3.7	3	0	0	3	3	3	0	Uncharacterised	protein	family	(UPF0242)	N-terminus
DUF2353	PF09789.9	gi|336252088|ref|YP_004586056.1|	-	0.71	9.2	6.6	1.2	8.4	0.1	2.8	3	0	0	3	3	3	0	Uncharacterized	coiled-coil	protein	(DUF2353)
DUF1351	PF07083.11	gi|336252088|ref|YP_004586056.1|	-	0.72	9.6	4.9	2.2	8.0	0.1	3.3	4	0	0	4	4	4	0	Protein	of	unknown	function	(DUF1351)
UMP1	PF05348.11	gi|336252088|ref|YP_004586056.1|	-	1	9.6	4.6	10	6.4	0.0	3.9	5	0	0	5	5	4	0	Proteasome	maturation	factor	UMP1
E2F_CC-MB	PF16421.5	gi|336252088|ref|YP_004586056.1|	-	5.2	7.5	8.2	11	6.4	0.5	3.1	2	0	0	2	2	2	0	E2F	transcription	factor	CC-MB	domain
FlaG	PF03646.15	gi|336252088|ref|YP_004586056.1|	-	5.6	7.2	10.8	1.3	9.2	1.2	3.9	5	0	0	5	5	4	0	FlaG	protein
DLP_helical	PF18709.1	gi|336252088|ref|YP_004586056.1|	-	5.6	6.1	6.7	4.3	6.5	0.6	2.8	3	0	0	3	3	3	0	Dynamin-like	helical	domain
Beta-lactamase	PF00144.24	gi|336252089|ref|YP_004586057.1|	-	4.8e-57	193.7	4.0	8.1e-57	192.9	3.3	1.6	2	0	0	2	2	2	1	Beta-lactamase
Methyltransf_23	PF13489.6	gi|336252090|ref|YP_004586058.1|	-	1.5e-23	83.4	0.0	2.4e-23	82.8	0.0	1.3	1	1	0	1	1	1	1	Methyltransferase	domain
Methyltransf_11	PF08241.12	gi|336252090|ref|YP_004586058.1|	-	2.6e-21	76.1	0.0	5.6e-21	75.0	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_25	PF13649.6	gi|336252090|ref|YP_004586058.1|	-	7.7e-21	74.6	0.0	1.3e-20	73.8	0.0	1.4	1	0	0	1	1	1	1	Methyltransferase	domain
Methyltransf_31	PF13847.6	gi|336252090|ref|YP_004586058.1|	-	1.4e-19	70.4	0.0	2.3e-19	69.7	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	domain
Ubie_methyltran	PF01209.18	gi|336252090|ref|YP_004586058.1|	-	9.8e-16	57.8	0.0	1.3e-15	57.4	0.0	1.1	1	0	0	1	1	1	1	ubiE/COQ5	methyltransferase	family
Methyltransf_12	PF08242.12	gi|336252090|ref|YP_004586058.1|	-	8.3e-12	45.7	0.0	1.7e-11	44.7	0.0	1.6	1	0	0	1	1	1	1	Methyltransferase	domain
TehB	PF03848.14	gi|336252090|ref|YP_004586058.1|	-	0.0001	21.8	0.0	0.00015	21.2	0.0	1.2	1	0	0	1	1	1	1	Tellurite	resistance	protein	TehB
MetW	PF07021.12	gi|336252090|ref|YP_004586058.1|	-	0.00011	21.9	0.0	0.00025	20.7	0.0	1.5	1	1	1	2	2	2	1	Methionine	biosynthesis	protein	MetW
CMAS	PF02353.20	gi|336252090|ref|YP_004586058.1|	-	0.00013	21.4	0.0	0.00016	21.1	0.0	1.3	1	0	0	1	1	1	1	Mycolic	acid	cyclopropane	synthetase
UPF0020	PF01170.18	gi|336252090|ref|YP_004586058.1|	-	0.00022	21.0	0.0	0.00066	19.4	0.0	1.7	2	0	0	2	2	2	1	Putative	RNA	methylase	family	UPF0020
MTS	PF05175.14	gi|336252090|ref|YP_004586058.1|	-	0.00025	20.6	0.0	0.00044	19.8	0.0	1.3	1	0	0	1	1	1	1	Methyltransferase	small	domain
PCMT	PF01135.19	gi|336252090|ref|YP_004586058.1|	-	0.022	14.5	0.0	0.033	13.9	0.0	1.2	1	0	0	1	1	1	0	Protein-L-isoaspartate(D-aspartate)	O-methyltransferase	(PCMT)
Methyltransf_29	PF03141.16	gi|336252090|ref|YP_004586058.1|	-	0.097	11.2	0.0	0.13	10.8	0.0	1.3	1	0	0	1	1	1	0	Putative	S-adenosyl-L-methionine-dependent	methyltransferase
HTH_20	PF12840.7	gi|336252091|ref|YP_004586059.1|	-	1.9e-07	31.0	0.0	4.5e-07	29.8	0.0	1.6	1	0	0	1	1	1	1	Helix-turn-helix	domain
GFA	PF04828.14	gi|336252091|ref|YP_004586059.1|	-	1.4e-05	25.4	0.3	0.00017	21.9	0.0	2.4	2	0	0	2	2	2	1	Glutathione-dependent	formaldehyde-activating	enzyme
DZR	PF12773.7	gi|336252091|ref|YP_004586059.1|	-	0.0099	15.9	3.3	0.47	10.5	0.2	2.5	2	0	0	2	2	2	2	Double	zinc	ribbon
zf-HYPF	PF07503.12	gi|336252091|ref|YP_004586059.1|	-	0.02	14.7	5.8	0.07	12.9	0.1	3.1	3	0	0	3	3	3	0	HypF	finger
HTH_5	PF01022.20	gi|336252091|ref|YP_004586059.1|	-	0.17	11.8	0.1	2.5	8.0	0.1	2.3	1	1	0	1	1	1	0	Bacterial	regulatory	protein,	arsR	family
zf-ribbon_3	PF13248.6	gi|336252091|ref|YP_004586059.1|	-	0.44	10.0	4.3	0.6	9.6	0.1	2.7	3	0	0	3	3	3	0	zinc-ribbon	domain
Elf1	PF05129.13	gi|336252091|ref|YP_004586059.1|	-	0.68	10.0	3.5	2.1	8.4	0.2	2.7	2	1	0	2	2	2	0	Transcription	elongation	factor	Elf1	like
ADD_ATRX	PF17981.1	gi|336252091|ref|YP_004586059.1|	-	1.1	9.2	3.3	0.86	9.5	0.1	2.4	3	0	0	3	3	3	0	Cysteine	Rich	ADD	domain
zinc-ribbons_6	PF07191.12	gi|336252091|ref|YP_004586059.1|	-	3	7.9	6.0	23	5.1	0.9	2.8	2	1	1	3	3	3	0	zinc-ribbons
zf-ribbon_3	PF13248.6	gi|336252093|ref|YP_004586061.1|	-	0.00048	19.4	1.6	0.59	9.6	0.0	2.4	2	0	0	2	2	2	2	zinc-ribbon	domain
DNA_ligase_ZBD	PF03119.16	gi|336252093|ref|YP_004586061.1|	-	0.048	13.7	0.2	0.12	12.4	0.2	1.8	1	0	0	1	1	1	0	NAD-dependent	DNA	ligase	C4	zinc	finger	domain
BAG	PF02179.16	gi|336252093|ref|YP_004586061.1|	-	0.052	14.0	0.3	0.092	13.2	0.3	1.3	1	0	0	1	1	1	0	BAG	domain
CwsA	PF10814.8	gi|336252093|ref|YP_004586061.1|	-	0.056	13.6	0.2	0.065	13.4	0.2	1.1	1	0	0	1	1	1	0	Cell	wall	synthesis	protein	CwsA
DUF2072	PF09845.9	gi|336252093|ref|YP_004586061.1|	-	0.13	12.6	0.5	0.4	10.9	0.0	1.8	1	1	1	2	2	2	0	Zn-ribbon	containing	protein
Nudix_N_2	PF14803.6	gi|336252093|ref|YP_004586061.1|	-	0.2	11.6	0.3	0.2	11.6	0.3	2.6	3	0	0	3	3	3	0	Nudix	N-terminal
DUF2387	PF09526.10	gi|336252093|ref|YP_004586061.1|	-	0.22	11.7	2.0	0.4	10.9	0.1	2.0	2	0	0	2	2	2	0	Probable	metal-binding	protein	(DUF2387)
HalX	PF08663.10	gi|336252093|ref|YP_004586061.1|	-	1.7	9.1	6.5	0.3	11.4	3.3	1.5	2	0	0	2	2	2	0	HalX	domain
zinc_ribbon_2	PF13240.6	gi|336252093|ref|YP_004586061.1|	-	6.2	6.7	5.7	8.1	6.3	0.3	2.3	2	0	0	2	2	2	0	zinc-ribbon	domain
RGI_lyase	PF18370.1	gi|336252094|ref|YP_004586062.1|	-	5.5e-30	103.5	0.0	1.6e-29	102.0	0.0	1.8	1	0	0	1	1	1	1	Rhamnogalacturonan	I	lyases	beta-sheet	domain
RicinB_lectin_2	PF14200.6	gi|336252094|ref|YP_004586062.1|	-	3.9e-19	69.2	3.8	2.1e-10	41.2	0.1	5.5	5	1	3	8	8	8	3	Ricin-type	beta-trefoil	lectin	domain-like
PKD	PF00801.20	gi|336252094|ref|YP_004586062.1|	-	1e-16	60.5	13.0	2.3e-08	33.8	2.2	3.0	3	0	0	3	3	3	2	PKD	domain
VCBS	PF13517.6	gi|336252094|ref|YP_004586062.1|	-	1.4e-08	35.1	5.0	0.15	12.7	0.1	5.2	4	0	0	4	4	4	3	Repeat	domain	in	Vibrio,	Colwellia,	Bradyrhizobium	and	Shewanella
FG-GAP	PF01839.23	gi|336252094|ref|YP_004586062.1|	-	3.7e-06	27.0	20.1	0.014	15.5	4.1	4.1	3	0	0	3	3	3	3	FG-GAP	repeat
GOLD_2	PF13897.6	gi|336252094|ref|YP_004586062.1|	-	0.00054	20.5	0.8	0.47	11.0	0.0	2.9	2	1	0	2	2	2	1	Golgi-dynamics	membrane-trafficking
ChitinaseA_N	PF08329.10	gi|336252094|ref|YP_004586062.1|	-	0.0015	18.2	0.1	0.021	14.5	0.1	2.4	2	0	0	2	2	2	1	Chitinase	A,	N-terminal	domain
PQQ	PF01011.21	gi|336252094|ref|YP_004586062.1|	-	0.0027	17.6	0.0	0.73	9.9	0.0	3.8	3	0	0	3	3	3	1	PQQ	enzyme	repeat
He_PIG	PF05345.12	gi|336252094|ref|YP_004586062.1|	-	0.29	11.3	3.9	17	5.7	0.2	3.1	2	0	0	2	2	2	0	Putative	Ig	domain
DUF5011	PF16403.5	gi|336252094|ref|YP_004586062.1|	-	2.9	8.1	7.6	9.5	6.4	0.3	3.7	3	0	0	3	3	3	0	Domain	of	unknown	function	(DUF5011)
Invasin_D3	PF09134.10	gi|336252094|ref|YP_004586062.1|	-	2.9	8.3	18.9	1.7	9.0	0.7	4.7	3	1	2	5	5	5	0	Invasin,	domain	3
FrhB_FdhB_C	PF04432.13	gi|336252095|ref|YP_004586063.1|	-	9.5e-31	106.7	0.0	2e-30	105.7	0.0	1.6	1	0	0	1	1	1	1	Coenzyme	F420	hydrogenase/dehydrogenase,	beta	subunit	C	terminus
FrhB_FdhB_N	PF04422.13	gi|336252095|ref|YP_004586063.1|	-	7.6e-24	83.7	0.0	1.3e-23	82.9	0.0	1.4	1	0	0	1	1	1	1	Coenzyme	F420	hydrogenase/dehydrogenase,	beta	subunit	N-term
Fer4	PF00037.27	gi|336252095|ref|YP_004586063.1|	-	5.6e-10	38.6	18.1	1.1e-06	28.2	4.9	3.4	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_16	PF13484.6	gi|336252095|ref|YP_004586063.1|	-	8.2e-10	39.5	6.9	0.0015	19.4	1.5	3.7	3	0	0	3	3	3	2	4Fe-4S	double	cluster	binding	domain
Fer4_21	PF14697.6	gi|336252095|ref|YP_004586063.1|	-	1e-09	38.4	7.0	1e-09	38.4	7.0	2.1	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_7	PF12838.7	gi|336252095|ref|YP_004586063.1|	-	1.3e-09	38.5	5.1	4.6e-05	23.9	0.3	3.2	3	0	0	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_10	PF13237.6	gi|336252095|ref|YP_004586063.1|	-	2.6e-08	33.8	13.4	2.5e-06	27.5	12.6	3.1	2	1	1	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_9	PF13187.6	gi|336252095|ref|YP_004586063.1|	-	1.8e-07	31.2	11.1	2.2e-07	30.9	8.0	2.4	2	0	0	2	2	2	1	4Fe-4S	dicluster	domain
Fer4_8	PF13183.6	gi|336252095|ref|YP_004586063.1|	-	2.1e-06	28.1	2.3	0.021	15.3	0.3	3.1	3	0	0	3	3	3	2	4Fe-4S	dicluster	domain
Fer4_6	PF12837.7	gi|336252095|ref|YP_004586063.1|	-	2.6e-05	24.1	4.7	2.6e-05	24.1	4.7	3.2	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_4	PF12800.7	gi|336252095|ref|YP_004586063.1|	-	9.6e-05	22.6	21.4	0.00049	20.4	3.7	3.3	3	0	0	3	3	3	2	4Fe-4S	binding	domain
Fer4_18	PF13746.6	gi|336252095|ref|YP_004586063.1|	-	0.00014	22.1	2.9	0.00014	22.1	2.9	1.7	2	0	0	2	2	1	1	4Fe-4S	dicluster	domain
Fer4_2	PF12797.7	gi|336252095|ref|YP_004586063.1|	-	0.00026	20.9	2.9	0.00026	20.9	2.9	3.1	3	0	0	3	3	3	2	4Fe-4S	binding	domain
TonB_2	PF13103.6	gi|336252095|ref|YP_004586063.1|	-	0.038	14.2	0.0	0.093	13.0	0.0	1.6	1	0	0	1	1	1	0	TonB	C	terminal
Fer4_17	PF13534.6	gi|336252095|ref|YP_004586063.1|	-	0.043	14.4	14.0	0.44	11.1	2.8	3.0	2	1	3	5	5	5	0	4Fe-4S	dicluster	domain
Fer4_15	PF13459.6	gi|336252095|ref|YP_004586063.1|	-	0.062	14.0	1.5	0.062	14.0	1.5	3.7	2	2	1	3	3	3	0	4Fe-4S	single	cluster	domain
Fer4_13	PF13370.6	gi|336252095|ref|YP_004586063.1|	-	0.1	13.2	17.0	0.28	11.8	2.9	3.3	3	0	0	3	3	2	0	4Fe-4S	single	cluster	domain	of	Ferredoxin	I
Fer4_3	PF12798.7	gi|336252095|ref|YP_004586063.1|	-	1.2	10.2	21.9	0.16	13.0	4.5	3.2	3	0	0	3	3	3	0	4Fe-4S	binding	domain
Fer4_22	PF17179.4	gi|336252095|ref|YP_004586063.1|	-	1.3	9.9	18.8	0.58	11.0	2.8	2.8	2	1	2	4	4	3	0	4Fe-4S	dicluster	domain
Fer4_20	PF14691.6	gi|336252095|ref|YP_004586063.1|	-	2.8	7.7	6.2	0.2	11.5	0.3	2.0	2	0	0	2	2	2	0	Dihydroprymidine	dehydrogenase	domain	II,	4Fe-4S	cluster
#
# Program:         hmmscan
# Version:         3.2.1 (June 2018)
# Pipeline mode:   SCAN
# Query file:      /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halopiger_xanaduensis_SH_6_uid68105/NC_015658.faa
# Target file:     /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm
# Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halopiger_xanaduensis_SH_6_uid68105/NC_015658.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halopiger_xanaduensis_SH_6_uid68105/NC_015658.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halopiger_xanaduensis_SH_6_uid68105/NC_015658.faa 
# Current dir:     /oak/stanford/groups/akundaje/marinovg/genomes
# Date:            Mon Mar 25 12:34:35 2019
# [ok]