# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- SBP_bac_8 PF13416.1 gi|257372909|ref|YP_003175683.1| - 8.3e-32 111.0 2.2 1.1e-31 110.5 1.5 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|257372909|ref|YP_003175683.1| - 8e-28 98.0 0.7 1.2e-27 97.5 0.5 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Secretin_N_2 PF07655.8 gi|257372909|ref|YP_003175683.1| - 0.03 14.6 1.2 0.059 13.7 0.8 1.5 1 0 0 1 1 1 0 Secretin N-terminal domain TAT_signal PF10518.4 gi|257372909|ref|YP_003175683.1| - 0.05 13.6 0.0 0.12 12.4 0.0 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_1 PF00528.17 gi|257372910|ref|YP_003175684.1| - 2.8e-12 46.5 33.9 5.9e-11 42.2 23.5 2.2 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component E1-E2_ATPase PF00122.15 gi|257372910|ref|YP_003175684.1| - 8 5.4 7.9 1.2 8.1 2.3 1.9 2 1 0 2 2 2 0 E1-E2 ATPase BPD_transp_1 PF00528.17 gi|257372911|ref|YP_003175685.1| - 2.7e-19 69.4 15.1 2.7e-19 69.4 10.5 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|257372912|ref|YP_003175686.1| - 5.8e-31 107.6 0.0 9.5e-31 106.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|257372912|ref|YP_003175686.1| - 5.4e-10 39.7 0.0 0.00014 21.9 0.0 2.2 1 1 1 2 2 2 2 AAA domain TOBE_2 PF08402.5 gi|257372912|ref|YP_003175686.1| - 2.6e-07 30.5 0.3 1.1e-06 28.5 0.1 2.2 2 0 0 2 2 2 1 TOBE domain AAA_15 PF13175.1 gi|257372912|ref|YP_003175686.1| - 7.2e-05 22.0 0.0 0.0011 18.0 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain SMC_N PF02463.14 gi|257372912|ref|YP_003175686.1| - 0.00023 20.4 0.0 0.00081 18.6 0.0 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain TOBE PF03459.12 gi|257372912|ref|YP_003175686.1| - 0.00042 20.3 0.4 0.011 15.7 0.2 2.8 3 0 0 3 3 3 1 TOBE domain DUF258 PF03193.11 gi|257372912|ref|YP_003175686.1| - 0.0013 17.8 0.0 0.0025 17.0 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|257372912|ref|YP_003175686.1| - 0.0041 17.1 0.0 0.0091 16.0 0.0 1.5 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.1 gi|257372912|ref|YP_003175686.1| - 0.0049 17.2 0.0 0.0085 16.4 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|257372912|ref|YP_003175686.1| - 0.0056 16.8 0.1 0.012 15.7 0.1 1.7 1 1 0 1 1 1 1 AAA domain Rad17 PF03215.10 gi|257372912|ref|YP_003175686.1| - 0.01 14.5 0.0 0.019 13.6 0.0 1.3 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_29 PF13555.1 gi|257372912|ref|YP_003175686.1| - 0.016 14.7 0.0 0.034 13.6 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA PF00004.24 gi|257372912|ref|YP_003175686.1| - 0.022 14.9 0.1 0.066 13.4 0.0 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_10 PF12846.2 gi|257372912|ref|YP_003175686.1| - 0.023 14.1 0.0 0.041 13.3 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain AAA_33 PF13671.1 gi|257372912|ref|YP_003175686.1| - 0.038 13.8 0.0 0.069 13.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|257372912|ref|YP_003175686.1| - 0.1 12.0 0.0 0.22 10.9 0.0 1.6 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.17 gi|257372912|ref|YP_003175686.1| - 0.12 12.5 0.0 1.3 9.2 0.0 2.3 2 0 0 2 2 2 0 RNA helicase Glyco_hydro_2_C PF02836.12 gi|257372913|ref|YP_003175687.1| - 3.8e-107 357.6 0.0 5e-107 357.2 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 2, TIM barrel domain Bgal_small_N PF02929.12 gi|257372913|ref|YP_003175687.1| - 9.6e-71 238.0 0.0 1.7e-70 237.1 0.0 1.4 1 0 0 1 1 1 1 Beta galactosidase small chain Glyco_hydro_2_N PF02837.13 gi|257372913|ref|YP_003175687.1| - 1.8e-55 187.0 0.4 3.2e-55 186.2 0.3 1.5 1 0 0 1 1 1 1 Glycosyl hydrolases family 2, sugar binding domain Glyco_hydro_2 PF00703.16 gi|257372913|ref|YP_003175687.1| - 7.3e-18 65.0 0.1 1.6e-17 63.9 0.1 1.6 1 0 0 1 1 1 1 Glycosyl hydrolases family 2 DUF2888 PF11135.3 gi|257372913|ref|YP_003175687.1| - 0.23 11.1 0.8 0.45 10.2 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2888) Lyase_8_N PF08124.6 gi|257372914|ref|YP_003175688.1| - 1.6e-95 319.7 0.0 2.8e-95 318.9 0.0 1.4 1 0 0 1 1 1 1 Polysaccharide lyase family 8, N terminal alpha-helical domain Lyase_8 PF02278.13 gi|257372914|ref|YP_003175688.1| - 2.3e-77 259.9 0.0 4.8e-77 258.9 0.0 1.5 1 0 0 1 1 1 1 Polysaccharide lyase family 8, super-sandwich domain Lyase_8_C PF02884.12 gi|257372914|ref|YP_003175688.1| - 3.7e-18 65.2 0.1 8.3e-18 64.1 0.1 1.6 1 0 0 1 1 1 1 Polysaccharide lyase family 8, C-terminal beta-sandwich domain HIG_1_N PF04588.8 gi|257372915|ref|YP_003175689.1| - 0.076 12.7 1.8 0.11 12.2 1.0 1.5 1 1 0 1 1 1 0 Hypoxia induced protein conserved region UPF0051 PF01458.12 gi|257372917|ref|YP_003175691.1| - 1.2e-66 224.4 0.3 1.8e-66 223.9 0.2 1.2 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) HTH_10 PF04967.7 gi|257372918|ref|YP_003175692.1| - 6.6e-15 54.4 0.1 1.2e-14 53.5 0.1 1.5 1 0 0 1 1 1 1 HTH DNA binding domain HTH_30 PF13556.1 gi|257372918|ref|YP_003175692.1| - 0.00036 20.0 0.1 0.001 18.6 0.0 1.7 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain MarR_2 PF12802.2 gi|257372918|ref|YP_003175692.1| - 0.00042 19.9 0.0 0.0012 18.4 0.0 1.8 1 0 0 1 1 1 1 MarR family HTH_8 PF02954.14 gi|257372918|ref|YP_003175692.1| - 0.0053 16.2 0.1 0.018 14.5 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory protein, Fis family HTH_20 PF12840.2 gi|257372918|ref|YP_003175692.1| - 0.011 15.4 0.0 0.035 13.9 0.0 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_psq PF05225.11 gi|257372918|ref|YP_003175692.1| - 0.028 13.9 0.0 0.028 13.9 0.0 2.1 3 0 0 3 3 3 0 helix-turn-helix, Psq domain HTH_24 PF13412.1 gi|257372918|ref|YP_003175692.1| - 0.12 11.7 0.0 0.21 11.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding E1-E2_ATPase PF00122.15 gi|257372919|ref|YP_003175693.1| - 2.3e-58 196.9 0.1 4.5e-58 196.0 0.0 1.5 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.21 gi|257372919|ref|YP_003175693.1| - 1.1e-46 159.9 7.0 3.3e-46 158.4 3.9 2.2 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|257372919|ref|YP_003175693.1| - 6.6e-15 55.7 0.1 1.4e-14 54.7 0.1 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|257372919|ref|YP_003175693.1| - 2.5e-10 40.3 0.2 1.8e-09 37.6 0.0 2.5 2 0 0 2 2 2 1 Heavy-metal-associated domain Hydrolase_3 PF08282.7 gi|257372919|ref|YP_003175693.1| - 0.0026 17.3 1.2 0.0099 15.4 0.8 1.8 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Sod_Fe_C PF02777.13 gi|257372920|ref|YP_003175694.1| - 1.5e-36 124.4 0.2 2.6e-36 123.6 0.2 1.3 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, C-terminal domain Sod_Fe_N PF00081.17 gi|257372920|ref|YP_003175694.1| - 5.3e-33 113.1 1.2 9.1e-33 112.3 0.8 1.4 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, alpha-hairpin domain G0-G1_switch_2 PF15103.1 gi|257372922|ref|YP_003175696.1| - 0.1 12.8 0.1 0.23 11.7 0.1 1.6 1 0 0 1 1 1 0 G0/G1 switch protein 2 MarR_2 PF12802.2 gi|257372923|ref|YP_003175697.1| - 1.8e-09 37.1 0.7 5.6e-09 35.5 0.1 2.1 2 0 0 2 2 2 1 MarR family MarR PF01047.17 gi|257372923|ref|YP_003175697.1| - 2.3e-07 30.4 0.0 5.2e-07 29.2 0.0 1.6 1 0 0 1 1 1 1 MarR family GntR PF00392.16 gi|257372923|ref|YP_003175697.1| - 5.9e-07 28.8 0.3 1.4e-06 27.6 0.2 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family TrmB PF01978.14 gi|257372923|ref|YP_003175697.1| - 1.4e-06 27.9 0.3 2.8e-06 26.9 0.1 1.5 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|257372923|ref|YP_003175697.1| - 1.1e-05 24.6 0.0 1.8e-05 24.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|257372923|ref|YP_003175697.1| - 1.3e-05 24.6 0.2 3.7e-05 23.2 0.0 1.9 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_27 PF13463.1 gi|257372923|ref|YP_003175697.1| - 4.9e-05 23.5 0.0 0.00011 22.4 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|257372923|ref|YP_003175697.1| - 0.00012 21.7 0.2 0.00032 20.4 0.2 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_DeoR PF08220.7 gi|257372923|ref|YP_003175697.1| - 0.00022 20.6 0.1 0.00043 19.7 0.1 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|257372923|ref|YP_003175697.1| - 0.0004 20.1 0.1 0.00069 19.3 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_11 PF08279.7 gi|257372923|ref|YP_003175697.1| - 0.0015 18.1 0.2 0.0042 16.6 0.1 1.8 1 1 1 2 2 2 1 HTH domain HTH_5 PF01022.15 gi|257372923|ref|YP_003175697.1| - 0.0061 16.1 0.0 0.012 15.2 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_23 PF13384.1 gi|257372923|ref|YP_003175697.1| - 0.012 15.2 0.1 0.053 13.1 0.0 2.1 2 0 0 2 2 2 0 Homeodomain-like domain Sulfolobus_pRN PF05584.6 gi|257372923|ref|YP_003175697.1| - 0.013 15.4 0.0 0.019 14.8 0.0 1.3 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein Trp_repressor PF01371.14 gi|257372923|ref|YP_003175697.1| - 0.013 15.4 0.1 0.021 14.7 0.0 1.3 1 0 0 1 1 1 0 Trp repressor protein Fe_dep_repress PF01325.14 gi|257372923|ref|YP_003175697.1| - 0.021 14.7 0.9 0.029 14.2 0.0 1.7 2 0 0 2 2 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_29 PF13551.1 gi|257372923|ref|YP_003175697.1| - 0.023 14.8 0.1 0.048 13.8 0.0 1.6 1 1 0 1 1 1 0 Winged helix-turn helix HTH_28 PF13518.1 gi|257372923|ref|YP_003175697.1| - 0.024 14.6 0.0 0.044 13.8 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain LacI PF00356.16 gi|257372923|ref|YP_003175697.1| - 0.03 13.9 0.0 0.069 12.7 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, lacI family HTH_41 PF14502.1 gi|257372923|ref|YP_003175697.1| - 0.03 13.9 0.0 0.059 13.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_38 PF13936.1 gi|257372923|ref|YP_003175697.1| - 0.032 13.7 0.4 0.11 12.1 0.0 2.1 2 1 0 2 2 1 0 Helix-turn-helix domain Rrf2 PF02082.15 gi|257372923|ref|YP_003175697.1| - 0.033 14.2 0.0 0.09 12.9 0.0 1.7 1 1 0 1 1 1 0 Transcriptional regulator HTH_36 PF13730.1 gi|257372923|ref|YP_003175697.1| - 0.039 14.0 0.0 0.073 13.2 0.0 1.5 1 1 0 1 1 1 0 Helix-turn-helix domain TBPIP PF07106.8 gi|257372923|ref|YP_003175697.1| - 0.1 12.1 0.0 0.17 11.4 0.0 1.3 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Phage_rep_O PF04492.8 gi|257372923|ref|YP_003175697.1| - 0.12 12.6 0.0 0.18 12.0 0.0 1.3 1 0 0 1 1 1 0 Bacteriophage replication protein O RepL PF05732.6 gi|257372923|ref|YP_003175697.1| - 0.12 11.5 0.0 0.18 10.9 0.0 1.2 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) RNA_pol_Rpc34 PF05158.7 gi|257372923|ref|YP_003175697.1| - 0.16 11.1 0.0 0.21 10.7 0.0 1.1 1 0 0 1 1 1 0 RNA polymerase Rpc34 subunit DUF2749 PF10907.3 gi|257372923|ref|YP_003175697.1| - 0.46 10.3 3.5 1.2 9.0 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2749) PALP PF00291.20 gi|257372924|ref|YP_003175698.1| - 9.2e-67 225.4 0.8 1e-66 225.2 0.6 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Peptidase_M24 PF00557.19 gi|257372924|ref|YP_003175698.1| - 0.077 12.5 0.1 0.1 12.1 0.0 1.3 1 0 0 1 1 1 0 Metallopeptidase family M24 HSP70 PF00012.15 gi|257372925|ref|YP_003175699.1| - 4.9e-157 523.4 7.1 2.9e-117 392.0 1.0 3.1 2 1 1 3 3 3 3 Hsp70 protein Pkinase PF00069.20 gi|257372925|ref|YP_003175699.1| - 4e-30 104.8 0.0 6.1e-30 104.2 0.0 1.3 1 0 0 1 1 1 1 Protein kinase domain GrpE PF01025.14 gi|257372925|ref|YP_003175699.1| - 6e-12 45.4 0.1 1.3e-11 44.3 0.0 1.5 1 0 0 1 1 1 1 GrpE Pkinase_Tyr PF07714.12 gi|257372925|ref|YP_003175699.1| - 4.8e-11 42.2 0.0 7.7e-11 41.5 0.0 1.3 1 0 0 1 1 1 1 Protein tyrosine kinase MreB_Mbl PF06723.8 gi|257372925|ref|YP_003175699.1| - 1.3e-08 33.8 3.8 2.6e-08 32.8 2.6 1.4 1 0 0 1 1 1 1 MreB/Mbl protein FGGY_C PF02782.11 gi|257372925|ref|YP_003175699.1| - 0.0026 17.4 1.2 0.015 14.8 0.1 2.5 3 0 0 3 3 3 1 FGGY family of carbohydrate kinases, C-terminal domain IDEAL PF08858.5 gi|257372925|ref|YP_003175699.1| - 0.072 12.5 0.2 0.15 11.5 0.1 1.5 1 0 0 1 1 1 0 IDEAL domain Antitoxin-MazE PF04014.13 gi|257372929|ref|YP_003175703.1| - 6.5e-05 22.5 0.0 8.5e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 Antidote-toxin recognition MazE PIN PF01850.16 gi|257372930|ref|YP_003175704.1| - 7.8e-16 58.5 0.5 8.8e-16 58.3 0.3 1.0 1 0 0 1 1 1 1 PIN domain AAA_16 PF13191.1 gi|257372933|ref|YP_003175707.1| - 1.4e-14 54.4 0.9 4.8e-14 52.7 0.0 2.2 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.24 gi|257372933|ref|YP_003175707.1| - 6.1e-14 52.3 0.0 1.6e-13 50.9 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Cdc6_C PF09079.6 gi|257372933|ref|YP_003175707.1| - 6.1e-10 38.6 0.2 2.3e-09 36.8 0.0 2.0 2 0 0 2 2 2 1 CDC6, C terminal AAA_22 PF13401.1 gi|257372933|ref|YP_003175707.1| - 5.1e-09 36.3 0.0 1e-08 35.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain DUF815 PF05673.8 gi|257372933|ref|YP_003175707.1| - 3.2e-07 29.5 0.0 6.6e-07 28.5 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) Arch_ATPase PF01637.13 gi|257372933|ref|YP_003175707.1| - 5.5e-06 26.2 0.0 1e-05 25.3 0.0 1.5 1 0 0 1 1 1 1 Archaeal ATPase AAA_25 PF13481.1 gi|257372933|ref|YP_003175707.1| - 0.00083 18.8 0.0 0.011 15.1 0.0 2.4 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|257372933|ref|YP_003175707.1| - 0.002 18.0 0.2 0.012 15.5 0.0 2.4 2 1 0 2 2 2 1 AAA domain Sigma54_activat PF00158.21 gi|257372933|ref|YP_003175707.1| - 0.0021 17.5 0.0 0.0036 16.7 0.0 1.4 1 0 0 1 1 1 1 Sigma-54 interaction domain IstB_IS21 PF01695.12 gi|257372933|ref|YP_003175707.1| - 0.0027 17.1 0.0 0.02 14.3 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein NACHT PF05729.7 gi|257372933|ref|YP_003175707.1| - 0.0029 17.3 0.0 0.0086 15.7 0.0 1.8 2 0 0 2 2 2 1 NACHT domain ABC_tran PF00005.22 gi|257372933|ref|YP_003175707.1| - 0.0048 17.2 0.1 0.017 15.4 0.0 2.0 1 1 1 2 2 2 1 ABC transporter AAA_17 PF13207.1 gi|257372933|ref|YP_003175707.1| - 0.0088 16.8 0.8 0.1 13.4 0.5 2.7 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|257372933|ref|YP_003175707.1| - 0.012 15.0 0.0 0.025 14.1 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Mg_chelatase PF01078.16 gi|257372933|ref|YP_003175707.1| - 0.014 14.5 0.0 0.025 13.7 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.17 gi|257372933|ref|YP_003175707.1| - 0.017 15.3 0.0 0.046 13.8 0.0 1.8 1 0 0 1 1 1 0 RNA helicase AAA_23 PF13476.1 gi|257372933|ref|YP_003175707.1| - 0.031 14.5 0.3 0.068 13.4 0.2 2.0 1 1 0 1 1 1 0 AAA domain AAA_PrkA PF08298.6 gi|257372933|ref|YP_003175707.1| - 0.033 12.8 0.0 0.057 12.1 0.0 1.3 1 0 0 1 1 1 0 PrkA AAA domain AAA_10 PF12846.2 gi|257372933|ref|YP_003175707.1| - 0.035 13.5 0.2 0.072 12.5 0.1 2.0 1 1 0 1 1 1 0 AAA-like domain DUF258 PF03193.11 gi|257372933|ref|YP_003175707.1| - 0.043 13.0 0.0 0.088 11.9 0.0 1.6 1 1 0 1 1 1 0 Protein of unknown function, DUF258 Herpes_UL14 PF03580.9 gi|257372933|ref|YP_003175707.1| - 0.064 13.0 0.6 0.19 11.4 0.1 2.0 2 0 0 2 2 1 0 Herpesvirus UL14-like protein MMR_HSR1 PF01926.18 gi|257372933|ref|YP_003175707.1| - 0.07 13.0 0.0 0.33 10.9 0.0 2.1 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_19 PF13245.1 gi|257372933|ref|YP_003175707.1| - 0.071 12.8 0.0 0.2 11.4 0.0 1.8 1 0 0 1 1 1 0 Part of AAA domain AAA_5 PF07728.9 gi|257372933|ref|YP_003175707.1| - 0.077 12.7 0.5 0.3 10.8 0.0 2.4 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) FtsK_SpoIIIE PF01580.13 gi|257372933|ref|YP_003175707.1| - 0.097 12.1 0.0 0.23 10.9 0.0 1.6 1 0 0 1 1 1 0 FtsK/SpoIIIE family Pkinase PF00069.20 gi|257372934|ref|YP_003175708.1| - 1e-33 116.6 0.0 1.7e-33 115.9 0.0 1.3 1 0 0 1 1 1 1 Protein kinase domain Cnd1 PF12717.2 gi|257372934|ref|YP_003175708.1| - 2.9e-31 108.6 0.0 0.0023 17.8 0.0 9.5 1 1 7 9 9 9 8 non-SMC mitotic condensation complex subunit 1 HEAT_2 PF13646.1 gi|257372934|ref|YP_003175708.1| - 2.2e-28 98.3 10.1 9.4e-05 22.6 0.0 8.0 2 2 6 8 8 8 8 HEAT repeats HEAT PF02985.17 gi|257372934|ref|YP_003175708.1| - 8.9e-22 75.1 7.5 3.7 7.8 0.0 14.2 16 0 0 16 16 14 2 HEAT repeat Pkinase_Tyr PF07714.12 gi|257372934|ref|YP_003175708.1| - 1.5e-21 76.6 0.0 2.3e-21 76.0 0.0 1.2 1 0 0 1 1 1 1 Protein tyrosine kinase HEAT_EZ PF13513.1 gi|257372934|ref|YP_003175708.1| - 1e-13 51.3 11.9 0.65 10.5 0.0 10.4 4 3 10 14 14 13 4 HEAT-like repeat Adaptin_N PF01602.15 gi|257372934|ref|YP_003175708.1| - 6e-13 47.9 0.0 0.00087 17.7 0.0 4.0 2 1 1 3 3 3 3 Adaptin N terminal region CLASP_N PF12348.3 gi|257372934|ref|YP_003175708.1| - 8.7e-08 31.7 0.1 0.79 9.0 0.0 5.7 3 1 2 6 6 6 3 CLASP N terminal DNA_alkylation PF08713.6 gi|257372934|ref|YP_003175708.1| - 4.9e-05 22.9 0.0 9 5.7 0.0 5.7 5 2 0 5 5 5 1 DNA alkylation repair enzyme RasGEF_N_2 PF14663.1 gi|257372934|ref|YP_003175708.1| - 0.005 16.7 0.7 28 4.6 0.0 5.7 2 2 4 8 8 8 0 Rapamycin-insensitive companion of mTOR RasGEF_N domain Kdo PF06293.9 gi|257372934|ref|YP_003175708.1| - 0.021 13.8 0.0 0.041 12.9 0.0 1.4 1 0 0 1 1 1 0 Lipopolysaccharide kinase (Kdo/WaaP) family SEN1_N PF12726.2 gi|257372934|ref|YP_003175708.1| - 0.1 10.6 0.0 8 4.3 0.0 2.8 4 0 0 4 4 4 0 SEN1 N terminal DUF3939 PF13075.1 gi|257372934|ref|YP_003175708.1| - 0.13 11.9 2.7 44 3.7 0.1 4.5 3 1 1 6 6 6 0 Protein of unknown function (DUF3939) Anticodon_1 PF08264.8 gi|257372934|ref|YP_003175708.1| - 0.33 10.6 3.8 51 3.5 0.0 5.3 5 1 1 7 7 7 0 Anticodon-binding domain of tRNA Pept_tRNA_hydro PF01195.14 gi|257372934|ref|YP_003175708.1| - 1.7 8.0 5.3 1.9e+02 1.3 0.0 5.5 6 1 2 8 8 8 0 Peptidyl-tRNA hydrolase Barstar PF01337.13 gi|257372934|ref|YP_003175708.1| - 2.8 7.8 11.4 1 9.2 0.2 4.4 4 1 0 5 5 5 0 Barstar (barnase inhibitor) PQQ_3 PF13570.1 gi|257372935|ref|YP_003175709.1| - 2.1e-37 126.3 40.8 5.4e-08 32.8 0.1 9.3 9 0 0 9 9 9 6 PQQ-like domain PQQ_2 PF13360.1 gi|257372935|ref|YP_003175709.1| - 5.5e-35 120.9 13.4 4.6e-21 75.3 6.2 3.4 2 1 0 2 2 2 2 PQQ-like domain Pkinase PF00069.20 gi|257372935|ref|YP_003175709.1| - 2.8e-30 105.3 0.0 4.2e-30 104.7 0.0 1.1 1 0 0 1 1 1 1 Protein kinase domain PQQ PF01011.16 gi|257372935|ref|YP_003175709.1| - 4.6e-27 92.1 11.6 8.2e-08 31.4 0.2 6.4 6 0 0 6 6 6 4 PQQ enzyme repeat Pkinase_Tyr PF07714.12 gi|257372935|ref|YP_003175709.1| - 3.7e-15 55.6 0.0 5.5e-15 55.1 0.0 1.1 1 0 0 1 1 1 1 Protein tyrosine kinase APH PF01636.18 gi|257372935|ref|YP_003175709.1| - 0.051 13.2 6.6 0.087 12.5 1.5 2.8 2 1 1 3 3 3 0 Phosphotransferase enzyme family Peptidase_S51 PF03575.12 gi|257372935|ref|YP_003175709.1| - 0.13 12.0 0.1 2.6 7.7 0.0 2.5 2 0 0 2 2 2 0 Peptidase family S51 AAA_5 PF07728.9 gi|257372936|ref|YP_003175710.1| - 7.7e-30 103.4 0.0 2.3e-29 101.9 0.0 1.7 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.6 gi|257372936|ref|YP_003175710.1| - 1.3e-13 50.6 0.0 2e-13 50.0 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA PF00004.24 gi|257372936|ref|YP_003175710.1| - 5.6e-09 36.3 0.0 1e-08 35.4 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) MCM PF00493.18 gi|257372936|ref|YP_003175710.1| - 2.2e-06 26.7 0.0 1.3e-05 24.2 0.0 1.9 2 0 0 2 2 2 1 MCM2/3/5 family Mg_chelatase PF01078.16 gi|257372936|ref|YP_003175710.1| - 2.2e-05 23.7 0.0 0.13 11.4 0.0 2.2 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI CbbQ_C PF08406.5 gi|257372936|ref|YP_003175710.1| - 2.8e-05 24.0 0.2 2.8e-05 24.0 0.1 2.2 3 0 0 3 3 3 1 CbbQ/NirQ/NorQ C-terminal AAA_22 PF13401.1 gi|257372936|ref|YP_003175710.1| - 3.5e-05 23.9 0.0 6.7e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain Sigma54_activat PF00158.21 gi|257372936|ref|YP_003175710.1| - 4.4e-05 23.0 0.0 0.00012 21.6 0.0 1.7 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_16 PF13191.1 gi|257372936|ref|YP_003175710.1| - 0.00013 22.0 0.9 0.11 12.4 0.0 2.9 2 1 1 3 3 3 2 AAA ATPase domain IstB_IS21 PF01695.12 gi|257372936|ref|YP_003175710.1| - 0.00023 20.6 0.0 0.00047 19.6 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_33 PF13671.1 gi|257372936|ref|YP_003175710.1| - 0.00093 19.0 0.0 0.0024 17.7 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|257372936|ref|YP_003175710.1| - 0.0023 17.8 0.0 0.0046 16.8 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|257372936|ref|YP_003175710.1| - 0.0048 17.7 0.1 0.0098 16.7 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|257372936|ref|YP_003175710.1| - 0.0065 16.0 0.0 0.012 15.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain Sigma54_activ_2 PF14532.1 gi|257372936|ref|YP_003175710.1| - 0.0095 15.9 0.0 0.031 14.3 0.0 1.8 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_25 PF13481.1 gi|257372936|ref|YP_003175710.1| - 0.011 15.1 0.7 0.054 12.8 0.0 2.1 2 1 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|257372936|ref|YP_003175710.1| - 0.012 15.3 0.0 0.092 12.5 0.0 2.5 2 0 0 2 2 2 0 Part of AAA domain RNA_helicase PF00910.17 gi|257372936|ref|YP_003175710.1| - 0.094 12.9 0.0 0.17 12.0 0.0 1.4 1 0 0 1 1 1 0 RNA helicase ABC_tran PF00005.22 gi|257372936|ref|YP_003175710.1| - 0.13 12.5 0.0 0.27 11.5 0.0 1.8 1 1 0 1 1 1 0 ABC transporter VWA_2 PF13519.1 gi|257372937|ref|YP_003175711.1| - 4.7e-09 36.5 0.0 9.5e-09 35.5 0.0 1.5 1 0 0 1 1 1 1 von Willebrand factor type A domain CobT_C PF11775.3 gi|257372937|ref|YP_003175711.1| - 8.6e-05 22.0 0.0 0.00022 20.7 0.0 1.7 1 0 0 1 1 1 1 Cobalamin biosynthesis protein CobT VWA domain VWA PF00092.23 gi|257372937|ref|YP_003175711.1| - 0.00035 20.3 0.0 0.0034 17.1 0.0 2.1 1 1 0 1 1 1 1 von Willebrand factor type A domain DUF2201_N PF13203.1 gi|257372937|ref|YP_003175711.1| - 0.0064 15.6 3.0 0.38 9.8 0.0 2.3 2 0 0 2 2 2 2 Putative metallopeptidase domain HEAT_2 PF13646.1 gi|257372938|ref|YP_003175712.1| - 7.9e-33 112.6 86.8 2e-06 27.9 0.1 14.3 7 4 6 13 13 13 9 HEAT repeats HEAT PF02985.17 gi|257372938|ref|YP_003175712.1| - 3.5e-16 57.7 52.8 0.00085 19.2 0.0 14.5 16 0 0 16 16 16 6 HEAT repeat Cohesin_HEAT PF12765.2 gi|257372938|ref|YP_003175712.1| - 1.8e-14 53.3 9.0 1.6e-10 40.6 0.0 6.5 5 0 0 5 5 5 1 HEAT repeat associated with sister chromatid cohesion Adaptin_N PF01602.15 gi|257372938|ref|YP_003175712.1| - 4e-13 48.5 0.0 0.012 13.9 0.0 5.9 5 2 1 6 6 6 4 Adaptin N terminal region HEAT_EZ PF13513.1 gi|257372938|ref|YP_003175712.1| - 2.8e-12 46.7 90.7 1e-06 29.0 0.3 15.4 14 3 3 17 17 17 8 HEAT-like repeat Cnd1 PF12717.2 gi|257372938|ref|YP_003175712.1| - 1.8e-08 34.4 0.0 0.031 14.1 0.0 6.2 5 1 1 6 6 6 2 non-SMC mitotic condensation complex subunit 1 Cnd3 PF12719.2 gi|257372938|ref|YP_003175712.1| - 0.00013 21.0 0.0 0.0031 16.5 0.0 2.6 3 0 0 3 3 3 1 Nuclear condensing complex subunits, C-term domain Arm PF00514.18 gi|257372938|ref|YP_003175712.1| - 0.0023 17.7 11.9 0.81 9.6 0.0 8.0 10 0 0 10 10 10 2 Armadillo/beta-catenin-like repeat Nipped-B_C PF12830.2 gi|257372938|ref|YP_003175712.1| - 0.087 12.4 0.0 34 3.9 0.0 3.5 3 1 0 3 3 3 0 Sister chromatid cohesion C-terminus HEAT_PBS PF03130.11 gi|257372938|ref|YP_003175712.1| - 0.96 10.1 47.4 1.5 9.5 1.1 12.7 13 0 0 13 13 13 0 PBS lyase HEAT-like repeat PHO4 PF01384.15 gi|257372939|ref|YP_003175713.1| - 3.2e-61 206.7 17.9 4.3e-61 206.3 12.4 1.2 1 0 0 1 1 1 1 Phosphate transporter family Pkinase PF00069.20 gi|257372940|ref|YP_003175714.1| - 1.3e-26 93.3 0.0 2e-26 92.6 0.0 1.3 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.12 gi|257372940|ref|YP_003175714.1| - 8e-16 57.8 0.0 1.6e-15 56.9 0.0 1.4 1 0 0 1 1 1 1 Protein tyrosine kinase Fer2 PF00111.22 gi|257372940|ref|YP_003175714.1| - 1.8e-11 43.6 1.5 4.3e-11 42.3 1.0 1.7 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain HrcA_DNA-bdg PF03444.10 gi|257372940|ref|YP_003175714.1| - 1.5e-07 30.7 0.0 0.0029 16.9 0.0 2.4 2 0 0 2 2 2 2 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Rrf2 PF02082.15 gi|257372940|ref|YP_003175714.1| - 1.3e-06 28.4 0.0 0.018 15.1 0.0 2.4 2 0 0 2 2 2 2 Transcriptional regulator HTH_11 PF08279.7 gi|257372940|ref|YP_003175714.1| - 4.2e-05 23.0 0.1 0.15 11.7 0.0 2.8 3 0 0 3 3 3 2 HTH domain HTH_20 PF12840.2 gi|257372940|ref|YP_003175714.1| - 8.5e-05 22.2 0.7 0.0051 16.5 0.0 2.9 3 0 0 3 3 2 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|257372940|ref|YP_003175714.1| - 0.0075 15.9 0.9 4.8 6.9 0.1 2.7 2 0 0 2 2 2 2 MarR family RPA_C PF08784.6 gi|257372940|ref|YP_003175714.1| - 0.015 15.6 0.3 0.55 10.6 0.0 2.5 2 0 0 2 2 2 0 Replication protein A C terminal Put_DNA-bind_N PF06971.8 gi|257372940|ref|YP_003175714.1| - 0.017 14.8 0.1 0.49 10.2 0.0 2.6 2 0 0 2 2 2 0 Putative DNA-binding protein N-terminus HTH_Crp_2 PF13545.1 gi|257372940|ref|YP_003175714.1| - 0.018 14.8 0.0 0.9 9.3 0.0 2.4 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain DinB_2 PF12867.2 gi|257372940|ref|YP_003175714.1| - 0.033 14.5 0.6 1.7 8.9 0.2 2.9 2 1 0 2 2 1 0 DinB superfamily TrmB PF01978.14 gi|257372940|ref|YP_003175714.1| - 0.048 13.3 0.0 1 9.0 0.0 2.5 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|257372940|ref|YP_003175714.1| - 0.067 12.5 0.0 2.9 7.3 0.0 2.4 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Fe_dep_repress PF01325.14 gi|257372940|ref|YP_003175714.1| - 0.068 13.1 0.1 5.4 7.0 0.1 2.5 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain Rio2_N PF09202.6 gi|257372940|ref|YP_003175714.1| - 0.17 11.9 0.0 1.9 8.5 0.0 2.4 3 0 0 3 3 3 0 Rio2, N-terminal VPS28 PF03997.7 gi|257372941|ref|YP_003175715.1| - 0.029 13.9 0.1 0.054 13.1 0.1 1.3 1 0 0 1 1 1 0 VPS28 protein phiKZ_IP PF12699.2 gi|257372941|ref|YP_003175715.1| - 0.047 12.6 0.1 0.051 12.4 0.0 1.2 1 0 0 1 1 1 0 phiKZ-like phage internal head proteins AAA PF00004.24 gi|257372942|ref|YP_003175716.1| - 1.4e-39 135.2 0.0 3.5e-39 134.0 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.7 gi|257372942|ref|YP_003175716.1| - 1.7e-06 27.2 0.0 3e-06 26.4 0.0 1.3 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_5 PF07728.9 gi|257372942|ref|YP_003175716.1| - 1.9e-05 24.3 0.5 0.00071 19.3 0.3 2.6 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_25 PF13481.1 gi|257372942|ref|YP_003175716.1| - 6.8e-05 22.3 1.8 0.023 14.0 0.2 2.6 1 1 1 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|257372942|ref|YP_003175716.1| - 0.00021 21.4 1.2 0.013 15.5 0.8 2.5 1 1 0 1 1 1 1 AAA domain AAA_2 PF07724.9 gi|257372942|ref|YP_003175716.1| - 0.0006 19.7 0.0 0.0035 17.2 0.0 2.2 1 1 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_17 PF13207.1 gi|257372942|ref|YP_003175716.1| - 0.00085 20.1 0.4 0.0032 18.2 0.0 2.2 2 1 0 2 2 1 1 AAA domain Mg_chelatase PF01078.16 gi|257372942|ref|YP_003175716.1| - 0.0011 18.1 0.0 0.0023 17.1 0.0 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI IstB_IS21 PF01695.12 gi|257372942|ref|YP_003175716.1| - 0.0016 17.8 0.0 0.004 16.5 0.0 1.6 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_19 PF13245.1 gi|257372942|ref|YP_003175716.1| - 0.0023 17.6 0.2 0.0023 17.6 0.1 2.1 3 0 0 3 3 1 1 Part of AAA domain PhoH PF02562.11 gi|257372942|ref|YP_003175716.1| - 0.0048 16.1 0.1 0.011 14.9 0.0 1.6 2 0 0 2 2 1 1 PhoH-like protein Zeta_toxin PF06414.7 gi|257372942|ref|YP_003175716.1| - 0.0052 15.8 0.3 0.99 8.4 0.0 2.3 2 0 0 2 2 2 1 Zeta toxin AAA_16 PF13191.1 gi|257372942|ref|YP_003175716.1| - 0.0062 16.5 6.5 0.055 13.4 0.0 3.1 2 1 0 3 3 3 1 AAA ATPase domain AAA_33 PF13671.1 gi|257372942|ref|YP_003175716.1| - 0.007 16.2 0.0 0.027 14.3 0.0 2.0 1 0 0 1 1 1 1 AAA domain ABC_tran PF00005.22 gi|257372942|ref|YP_003175716.1| - 0.0096 16.2 0.2 0.14 12.4 0.0 2.3 2 0 0 2 2 2 1 ABC transporter AAA_14 PF13173.1 gi|257372942|ref|YP_003175716.1| - 0.0099 15.7 0.0 0.026 14.4 0.0 1.7 1 0 0 1 1 1 1 AAA domain Sigma54_activat PF00158.21 gi|257372942|ref|YP_003175716.1| - 0.012 15.1 0.0 0.31 10.5 0.0 2.2 1 1 0 1 1 1 0 Sigma-54 interaction domain KaiC PF06745.8 gi|257372942|ref|YP_003175716.1| - 0.028 13.5 0.7 0.68 9.0 0.0 2.8 2 1 1 3 3 3 0 KaiC TPR_2 PF07719.12 gi|257372942|ref|YP_003175716.1| - 0.03 14.2 0.5 0.078 12.9 0.3 1.7 1 0 0 1 1 1 0 Tetratricopeptide repeat TPR_1 PF00515.23 gi|257372942|ref|YP_003175716.1| - 0.033 13.8 0.3 0.076 12.6 0.2 1.6 1 0 0 1 1 1 0 Tetratricopeptide repeat AAA_18 PF13238.1 gi|257372942|ref|YP_003175716.1| - 0.04 14.2 0.4 0.13 12.5 0.0 2.1 2 1 0 2 2 2 0 AAA domain AAA_24 PF13479.1 gi|257372942|ref|YP_003175716.1| - 0.042 13.4 0.0 0.077 12.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_11 PF13086.1 gi|257372942|ref|YP_003175716.1| - 0.044 13.3 0.6 0.13 11.8 0.0 1.9 2 0 0 2 2 2 0 AAA domain Vps4_C PF09336.5 gi|257372942|ref|YP_003175716.1| - 0.046 13.6 0.1 0.2 11.5 0.0 2.1 2 0 0 2 2 1 0 Vps4 C terminal oligomerisation domain Sigma54_activ_2 PF14532.1 gi|257372942|ref|YP_003175716.1| - 0.068 13.2 0.0 0.19 11.8 0.0 1.7 1 1 0 1 1 1 0 Sigma-54 interaction domain TIP49 PF06068.8 gi|257372942|ref|YP_003175716.1| - 0.076 11.7 0.0 0.17 10.5 0.0 1.6 1 0 0 1 1 1 0 TIP49 C-terminus RNA_helicase PF00910.17 gi|257372942|ref|YP_003175716.1| - 0.077 13.1 0.0 0.46 10.6 0.0 2.2 2 0 0 2 2 2 0 RNA helicase AAA_28 PF13521.1 gi|257372942|ref|YP_003175716.1| - 0.079 12.9 1.0 0.16 11.8 0.1 2.1 2 1 0 2 2 1 0 AAA domain AAA_3 PF07726.6 gi|257372942|ref|YP_003175716.1| - 0.087 12.4 0.0 0.15 11.6 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SKI PF01202.17 gi|257372942|ref|YP_003175716.1| - 0.12 12.2 1.7 0.17 11.7 0.0 2.0 2 0 0 2 2 2 0 Shikimate kinase DUF1104 PF06518.6 gi|257372943|ref|YP_003175717.1| - 0.0017 18.4 1.9 0.0017 18.4 1.3 2.5 1 1 1 2 2 2 1 Protein of unknown function (DUF1104) GAS PF13851.1 gi|257372943|ref|YP_003175717.1| - 0.0046 16.1 13.4 0.0046 16.1 9.3 2.3 1 1 1 2 2 2 1 Growth-arrest specific micro-tubule binding UCH PF00443.24 gi|257372943|ref|YP_003175717.1| - 0.0065 15.6 3.0 0.008 15.3 2.1 1.2 1 0 0 1 1 1 1 Ubiquitin carboxyl-terminal hydrolase Lsr2 PF11774.3 gi|257372943|ref|YP_003175717.1| - 0.011 15.7 4.5 0.022 14.6 2.7 1.9 1 1 0 1 1 1 0 Lsr2 Seryl_tRNA_N PF02403.17 gi|257372943|ref|YP_003175717.1| - 0.016 15.2 21.4 0.94 9.5 2.7 3.2 2 1 1 3 3 3 0 Seryl-tRNA synthetase N-terminal domain DUF948 PF06103.6 gi|257372943|ref|YP_003175717.1| - 0.059 13.2 6.1 0.23 11.3 0.4 3.1 1 1 2 3 3 3 0 Bacterial protein of unknown function (DUF948) DUF4201 PF13870.1 gi|257372943|ref|YP_003175717.1| - 0.072 12.5 18.8 0.1 12.0 13.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4201) YlbD_coat PF14071.1 gi|257372943|ref|YP_003175717.1| - 0.074 13.1 6.3 0.15 12.1 4.4 1.5 1 0 0 1 1 1 0 Putative coat protein Bap31 PF05529.7 gi|257372943|ref|YP_003175717.1| - 0.27 10.6 0.1 0.27 10.6 0.0 2.8 2 1 0 2 2 2 0 B-cell receptor-associated protein 31-like FdhE PF04216.7 gi|257372943|ref|YP_003175717.1| - 0.3 10.7 3.4 0.36 10.4 2.4 1.2 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation YkyA PF10368.4 gi|257372943|ref|YP_003175717.1| - 0.63 9.3 16.2 1.6 8.0 9.8 2.4 1 1 1 2 2 2 0 Putative cell-wall binding lipoprotein WBS_methylT PF12589.3 gi|257372943|ref|YP_003175717.1| - 0.65 10.5 10.7 2.7 8.5 1.4 2.6 2 0 0 2 2 2 0 Methyltransferase involved in Williams-Beuren syndrome V_ATPase_I PF01496.14 gi|257372943|ref|YP_003175717.1| - 0.78 7.5 12.6 0.89 7.3 8.7 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF883 PF05957.8 gi|257372943|ref|YP_003175717.1| - 0.85 10.0 6.1 1 9.8 2.9 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) MbeD_MobD PF04899.7 gi|257372943|ref|YP_003175717.1| - 2.2 8.2 8.2 2.2 8.2 2.8 2.8 1 1 1 2 2 2 0 MbeD/MobD like Spore_III_AB PF09548.5 gi|257372943|ref|YP_003175717.1| - 3.1 7.5 11.5 3.8 7.2 6.9 1.9 1 1 0 1 1 1 0 Stage III sporulation protein AB (spore_III_AB) Fzo_mitofusin PF04799.8 gi|257372943|ref|YP_003175717.1| - 3.5 6.9 8.0 0.7 9.2 0.5 2.2 2 0 0 2 2 2 0 fzo-like conserved region OmpH PF03938.9 gi|257372943|ref|YP_003175717.1| - 8.9 6.2 21.0 1.2 9.1 7.9 2.2 1 1 1 2 2 2 0 Outer membrane protein (OmpH-like) Atg14 PF10186.4 gi|257372944|ref|YP_003175718.1| - 0.00038 19.4 8.2 0.00068 18.6 5.7 1.3 1 0 0 1 1 1 1 UV radiation resistance protein and autophagy-related subunit 14 Prefoldin PF02996.12 gi|257372944|ref|YP_003175718.1| - 0.92 9.1 6.6 1 8.9 1.1 2.4 1 1 1 2 2 2 0 Prefoldin subunit Baculo_p24 PF05073.7 gi|257372944|ref|YP_003175718.1| - 2.5 7.6 4.6 3.4 7.1 2.1 2.0 1 1 1 2 2 2 0 Baculovirus P24 capsid protein Dor1 PF04124.7 gi|257372944|ref|YP_003175718.1| - 5.6 5.3 10.0 5.3 5.4 1.9 2.1 2 0 0 2 2 2 0 Dor1-like family AATF-Che1 PF13339.1 gi|257372944|ref|YP_003175718.1| - 6.8 6.8 17.0 1.6 8.8 5.4 2.5 1 1 2 3 3 3 0 Apoptosis antagonizing transcription factor DUF883 PF05957.8 gi|257372944|ref|YP_003175718.1| - 7 7.1 14.5 25 5.3 5.0 3.3 1 1 3 4 4 4 0 Bacterial protein of unknown function (DUF883) MerR-DNA-bind PF09278.6 gi|257372944|ref|YP_003175718.1| - 8.1 6.9 8.8 1.5 9.2 2.2 2.3 2 0 0 2 2 2 0 MerR, DNA binding Nitrate_red_del PF02613.10 gi|257372945|ref|YP_003175719.1| - 2.4e-32 111.5 0.1 3e-32 111.2 0.1 1.1 1 0 0 1 1 1 1 Nitrate reductase delta subunit NrfD PF03916.9 gi|257372946|ref|YP_003175720.1| - 1.8e-72 244.4 15.6 2.8e-72 243.8 10.8 1.3 1 0 0 1 1 1 1 Polysulphide reductase, NrfD Fer4_11 PF13247.1 gi|257372947|ref|YP_003175721.1| - 7.2e-28 96.3 17.4 2.1e-18 65.9 4.9 3.1 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|257372947|ref|YP_003175721.1| - 2.2e-19 69.5 26.0 2.5e-09 37.3 7.2 2.9 2 2 1 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|257372947|ref|YP_003175721.1| - 2.2e-16 59.8 23.3 1.8e-10 40.9 5.5 3.1 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|257372947|ref|YP_003175721.1| - 3.5e-16 58.7 52.6 3e-09 36.5 5.6 3.3 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.22 gi|257372947|ref|YP_003175721.1| - 5.8e-14 51.0 40.2 1.2e-08 34.2 3.0 5.7 5 1 0 5 5 5 3 4Fe-4S binding domain Fer4_6 PF12837.2 gi|257372947|ref|YP_003175721.1| - 1.9e-13 49.6 39.7 9.8e-08 31.5 3.3 4.7 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_2 PF12797.2 gi|257372947|ref|YP_003175721.1| - 2.5e-13 49.0 34.7 8e-07 28.6 2.2 4.7 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_8 PF13183.1 gi|257372947|ref|YP_003175721.1| - 1.9e-10 40.6 23.2 3.3e-05 23.8 5.5 2.5 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|257372947|ref|YP_003175721.1| - 4e-07 29.8 37.3 0.00012 22.0 2.1 4.4 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_21 PF14697.1 gi|257372947|ref|YP_003175721.1| - 1.1e-06 28.4 28.3 0.00036 20.3 0.4 4.0 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|257372947|ref|YP_003175721.1| - 1.1e-06 28.8 25.2 0.0026 18.0 5.0 3.9 3 1 1 4 4 4 3 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|257372947|ref|YP_003175721.1| - 1.7e-06 28.1 43.3 0.018 15.5 3.8 4.3 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_16 PF13484.1 gi|257372947|ref|YP_003175721.1| - 0.001 19.7 29.2 0.026 15.2 1.7 4.3 2 1 3 5 5 5 3 4Fe-4S double cluster binding domain Fer4_15 PF13459.1 gi|257372947|ref|YP_003175721.1| - 0.0047 17.4 27.7 0.007 16.9 0.2 4.4 4 1 1 5 5 5 2 4Fe-4S single cluster domain Fer4_20 PF14691.1 gi|257372947|ref|YP_003175721.1| - 1.1 8.9 25.1 0.58 9.8 3.2 4.1 3 1 1 4 4 4 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_18 PF13746.1 gi|257372947|ref|YP_003175721.1| - 3.3 8.1 30.3 0.31 11.4 1.2 4.4 3 2 1 4 4 4 0 4Fe-4S dicluster domain Molybdopterin PF00384.17 gi|257372948|ref|YP_003175722.1| - 4.5e-53 180.5 0.0 2.5e-52 178.0 0.0 1.9 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|257372948|ref|YP_003175722.1| - 4.6e-24 84.3 0.1 1.2e-23 82.9 0.0 1.7 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|257372948|ref|YP_003175722.1| - 2.8e-10 39.8 2.6 4.3e-10 39.2 0.7 2.1 2 0 0 2 2 2 1 Molybdopterin oxidoreductase Fe4S4 domain TAT_signal PF10518.4 gi|257372948|ref|YP_003175722.1| - 0.063 13.3 0.5 0.17 11.9 0.4 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence HTH_10 PF04967.7 gi|257372950|ref|YP_003175724.1| - 1.3e-16 59.9 0.1 2.2e-16 59.1 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_24 PF13412.1 gi|257372950|ref|YP_003175724.1| - 0.0048 16.2 0.0 0.0087 15.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_1 PF00126.22 gi|257372950|ref|YP_003175724.1| - 0.0053 16.4 0.2 0.011 15.3 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family Sigma70_r4 PF04545.11 gi|257372950|ref|YP_003175724.1| - 0.01 15.1 0.0 0.023 13.9 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_AsnC-type PF13404.1 gi|257372950|ref|YP_003175724.1| - 0.013 15.0 0.0 0.024 14.1 0.0 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_20 PF12840.2 gi|257372950|ref|YP_003175724.1| - 0.015 15.0 0.2 0.056 13.2 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain MarR_2 PF12802.2 gi|257372950|ref|YP_003175724.1| - 0.021 14.4 0.3 0.12 12.0 0.0 2.3 2 1 1 3 3 3 0 MarR family HTH_3 PF01381.17 gi|257372950|ref|YP_003175724.1| - 0.1 12.4 0.0 0.2 11.5 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix HGWP PF03578.10 gi|257372952|ref|YP_003175726.1| - 1 8.7 4.9 0.42 9.9 0.8 2.2 2 0 0 2 2 2 0 HGWP repeat DivIVA PF05103.8 gi|257372953|ref|YP_003175727.1| - 0.03 14.3 3.4 0.02 14.9 1.0 1.8 2 1 0 2 2 2 0 DivIVA protein HHH_8 PF14716.1 gi|257372953|ref|YP_003175727.1| - 0.034 14.3 0.4 0.14 12.3 0.3 2.1 1 1 0 1 1 1 0 Helix-hairpin-helix domain Complex1_LYR_2 PF13233.1 gi|257372953|ref|YP_003175727.1| - 0.11 12.9 1.8 0.18 12.3 1.0 1.6 1 1 0 1 1 1 0 Complex1_LYR-like ING PF12998.2 gi|257372953|ref|YP_003175727.1| - 0.24 11.6 1.7 0.26 11.5 0.2 1.8 3 0 0 3 3 3 0 Inhibitor of growth proteins N-terminal histone-binding TMF_TATA_bd PF12325.3 gi|257372953|ref|YP_003175727.1| - 0.75 9.5 6.0 1.3 8.7 0.2 2.5 3 0 0 3 3 3 0 TATA element modulatory factor 1 TATA binding Fe_dep_repress PF01325.14 gi|257372954|ref|YP_003175728.1| - 4.4e-12 45.7 0.2 6.4e-12 45.2 0.1 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.2 gi|257372954|ref|YP_003175728.1| - 2.3e-06 27.1 0.1 3.6e-06 26.5 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|257372954|ref|YP_003175728.1| - 1.2e-05 25.5 0.1 2.1e-05 24.7 0.1 1.4 1 1 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.17 gi|257372954|ref|YP_003175728.1| - 0.00024 20.7 0.0 0.0004 20.0 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_12 PF08461.5 gi|257372954|ref|YP_003175728.1| - 0.0059 16.3 0.0 0.011 15.4 0.0 1.5 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain TrmB PF01978.14 gi|257372954|ref|YP_003175728.1| - 0.018 14.7 0.1 0.028 14.1 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Rio2_N PF09202.6 gi|257372954|ref|YP_003175728.1| - 0.022 14.8 0.0 0.031 14.3 0.0 1.2 1 0 0 1 1 1 0 Rio2, N-terminal B-block_TFIIIC PF04182.7 gi|257372954|ref|YP_003175728.1| - 0.038 13.8 0.0 0.051 13.4 0.0 1.2 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_34 PF13601.1 gi|257372954|ref|YP_003175728.1| - 0.076 13.0 0.0 0.11 12.5 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain Rrf2 PF02082.15 gi|257372954|ref|YP_003175728.1| - 0.11 12.6 0.0 0.16 12.0 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator DUF4149 PF13664.1 gi|257372955|ref|YP_003175729.1| - 0.076 13.0 0.5 0.076 13.0 0.3 3.1 3 1 0 3 3 3 0 Domain of unknown function (DUF4149) DUF2249 PF10006.4 gi|257372957|ref|YP_003175731.1| - 1.6e-81 267.8 21.3 2.2e-27 94.3 0.5 4.1 4 0 0 4 4 4 4 Uncharacterized conserved protein (DUF2249) DUF2249 PF10006.4 gi|257372958|ref|YP_003175732.1| - 3.5e-20 71.3 0.8 4e-20 71.1 0.6 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) TusA PF01206.12 gi|257372959|ref|YP_003175733.1| - 9e-10 38.0 0.0 1.1e-09 37.8 0.0 1.1 1 0 0 1 1 1 1 Sulfurtransferase TusA CopD PF05425.8 gi|257372960|ref|YP_003175734.1| - 4.5e-05 23.5 5.1 4.5e-05 23.5 3.5 2.0 1 1 1 2 2 2 2 Copper resistance protein D DUF836 PF05768.9 gi|257372961|ref|YP_003175735.1| - 7.6e-13 48.5 0.1 8.5e-13 48.3 0.1 1.0 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Glutaredoxin PF00462.19 gi|257372961|ref|YP_003175735.1| - 0.00017 21.5 0.2 0.00034 20.5 0.1 1.6 1 1 1 2 2 2 1 Glutaredoxin Thioredoxin_3 PF13192.1 gi|257372961|ref|YP_003175735.1| - 0.00094 18.9 0.0 0.0011 18.7 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin domain Arc PF03869.9 gi|257372961|ref|YP_003175735.1| - 0.061 12.9 0.5 0.3 10.7 0.0 1.9 2 0 0 2 2 2 0 Arc-like DNA binding domain PP2C_2 PF13672.1 gi|257372962|ref|YP_003175736.1| - 8.5e-16 57.9 2.3 1.1e-15 57.5 1.6 1.2 1 0 0 1 1 1 1 Protein phosphatase 2C PP2C PF00481.16 gi|257372962|ref|YP_003175736.1| - 1.6e-14 53.9 0.0 8.8e-14 51.5 0.0 1.8 1 1 0 1 1 1 1 Protein phosphatase 2C SpoIIE PF07228.7 gi|257372962|ref|YP_003175736.1| - 1.4e-07 31.4 7.1 8.2e-07 28.9 4.9 1.9 1 1 0 1 1 1 1 Stage II sporulation protein E (SpoIIE) Imm1 PF14430.1 gi|257372962|ref|YP_003175736.1| - 0.06 13.4 1.1 0.13 12.3 0.3 1.9 2 0 0 2 2 2 0 Immunity protein Imm1 CENP-F_leu_zip PF10473.4 gi|257372963|ref|YP_003175737.1| - 0.0021 17.9 16.4 0.0021 17.9 11.4 3.5 3 1 1 4 4 4 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF3450 PF11932.3 gi|257372963|ref|YP_003175737.1| - 0.004 16.4 5.3 0.004 16.4 3.7 3.1 2 2 1 3 3 3 1 Protein of unknown function (DUF3450) Baculo_PEP_C PF04513.7 gi|257372963|ref|YP_003175737.1| - 0.004 16.9 11.7 0.092 12.5 0.3 3.4 2 1 1 3 3 3 2 Baculovirus polyhedron envelope protein, PEP, C terminus TMF_DNA_bd PF12329.3 gi|257372963|ref|YP_003175737.1| - 0.0043 16.8 1.3 0.0043 16.8 0.9 4.3 2 1 2 4 4 4 1 TATA element modulatory factor 1 DNA binding DUF812 PF05667.6 gi|257372963|ref|YP_003175737.1| - 0.17 10.3 24.4 0.91 7.9 16.6 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF812) Tweety PF04906.8 gi|257372963|ref|YP_003175737.1| - 0.37 9.1 1.8 0.6 8.4 0.5 1.8 1 1 0 1 1 1 0 Tweety Reo_sigmaC PF04582.7 gi|257372963|ref|YP_003175737.1| - 0.41 9.7 7.3 0.16 11.1 2.0 2.0 1 1 1 2 2 2 0 Reovirus sigma C capsid protein FlxA PF14282.1 gi|257372963|ref|YP_003175737.1| - 0.98 9.4 18.0 0.32 10.9 6.9 3.3 1 1 2 3 3 3 0 FlxA-like protein Spc7 PF08317.6 gi|257372963|ref|YP_003175737.1| - 1.1 7.9 27.0 0.39 9.3 9.6 2.7 2 1 1 3 3 3 0 Spc7 kinetochore protein DUF972 PF06156.8 gi|257372963|ref|YP_003175737.1| - 1.4 9.3 26.2 0.14 12.4 0.6 5.1 3 1 2 5 5 5 0 Protein of unknown function (DUF972) DUF724 PF05266.9 gi|257372963|ref|YP_003175737.1| - 2.9 7.4 15.5 33 4.0 0.8 2.7 1 1 2 3 3 3 0 Protein of unknown function (DUF724) DUF1664 PF07889.7 gi|257372963|ref|YP_003175737.1| - 6.9 6.4 12.8 11 5.8 0.9 3.8 1 1 3 4 4 4 0 Protein of unknown function (DUF1664) TBPIP PF07106.8 gi|257372963|ref|YP_003175737.1| - 8.4 5.9 25.0 0.48 9.9 0.4 3.8 2 1 2 4 4 4 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Imm42 PF15601.1 gi|257372964|ref|YP_003175738.1| - 0.02 14.3 0.1 0.027 13.8 0.1 1.2 1 0 0 1 1 1 0 Immunity protein 42 ScpA_ScpB PF02616.9 gi|257372964|ref|YP_003175738.1| - 0.047 13.2 1.4 0.058 12.9 0.9 1.2 1 0 0 1 1 1 0 ScpA/B protein DUF4636 PF15468.1 gi|257372964|ref|YP_003175738.1| - 0.1 12.0 0.2 0.14 11.6 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4636) THP2 PF09432.5 gi|257372964|ref|YP_003175738.1| - 0.15 11.9 1.0 1.1 9.1 0.2 2.3 2 1 1 3 3 3 0 Tho complex subunit THP2 Pkinase PF00069.20 gi|257372967|ref|YP_003175741.1| - 1.5e-29 102.9 0.0 2e-29 102.5 0.0 1.1 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.12 gi|257372967|ref|YP_003175741.1| - 4.2e-22 78.4 0.0 5.5e-22 78.0 0.0 1.1 1 0 0 1 1 1 1 Protein tyrosine kinase Pkinase PF00069.20 gi|257372968|ref|YP_003175742.1| - 1.6e-28 99.5 0.0 2.2e-28 99.1 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain HEAT_2 PF13646.1 gi|257372968|ref|YP_003175742.1| - 5.2e-27 93.9 42.6 7.4e-10 38.9 1.1 6.5 4 2 3 7 7 7 6 HEAT repeats HEAT PF02985.17 gi|257372968|ref|YP_003175742.1| - 6.8e-19 66.1 14.6 0.035 14.1 0.0 10.5 11 0 0 11 11 10 4 HEAT repeat Pkinase_Tyr PF07714.12 gi|257372968|ref|YP_003175742.1| - 3.9e-18 65.4 0.0 5e-18 65.0 0.0 1.1 1 0 0 1 1 1 1 Protein tyrosine kinase Adaptin_N PF01602.15 gi|257372968|ref|YP_003175742.1| - 1.1e-12 47.0 0.0 0.0003 19.2 0.0 4.2 4 1 0 4 4 4 3 Adaptin N terminal region HEAT_EZ PF13513.1 gi|257372968|ref|YP_003175742.1| - 2.3e-11 43.8 48.8 6.4e-06 26.4 1.2 9.4 5 1 5 10 10 10 6 HEAT-like repeat Cnd1 PF12717.2 gi|257372968|ref|YP_003175742.1| - 2.5e-05 24.1 0.0 0.00058 19.7 0.0 2.5 2 0 0 2 2 2 1 non-SMC mitotic condensation complex subunit 1 BID PF06393.6 gi|257372968|ref|YP_003175742.1| - 0.026 13.8 0.4 0.15 11.4 0.1 2.1 2 0 0 2 2 2 0 BH3 interacting domain (BID) API5 PF05918.6 gi|257372968|ref|YP_003175742.1| - 0.032 12.7 0.5 0.61 8.5 0.1 2.2 2 0 0 2 2 2 0 Apoptosis inhibitory protein 5 (API5) HEAT_PBS PF03130.11 gi|257372968|ref|YP_003175742.1| - 0.1 13.1 0.1 0.1 13.1 0.1 9.1 9 1 0 9 9 9 0 PBS lyase HEAT-like repeat Gene66 PF02053.10 gi|257372968|ref|YP_003175742.1| - 0.1 11.9 0.2 0.21 10.9 0.1 1.4 1 0 0 1 1 1 0 Gene 66 (IR5) protein Cnd3 PF12719.2 gi|257372968|ref|YP_003175742.1| - 0.27 10.1 0.0 0.53 9.2 0.0 1.4 1 0 0 1 1 1 0 Nuclear condensing complex subunits, C-term domain Pkinase PF00069.20 gi|257372969|ref|YP_003175743.1| - 3.6e-33 114.8 0.0 5e-33 114.3 0.0 1.1 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.12 gi|257372969|ref|YP_003175743.1| - 3.9e-25 88.4 0.0 4.9e-25 88.0 0.0 1.1 1 0 0 1 1 1 1 Protein tyrosine kinase HTH_20 PF12840.2 gi|257372969|ref|YP_003175743.1| - 6.9e-05 22.5 0.1 0.0002 21.0 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain APH PF01636.18 gi|257372969|ref|YP_003175743.1| - 0.00014 21.7 0.1 0.052 13.2 0.1 2.6 1 1 1 2 2 2 2 Phosphotransferase enzyme family HTH_27 PF13463.1 gi|257372969|ref|YP_003175743.1| - 0.0034 17.6 0.0 0.0072 16.6 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain Phage_rep_org_N PF09681.5 gi|257372969|ref|YP_003175743.1| - 0.19 11.3 0.0 0.37 10.3 0.0 1.4 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) DNA_pol_viral_N PF00242.12 gi|257372969|ref|YP_003175743.1| - 9.4 5.1 7.8 14 4.5 5.4 1.1 1 0 0 1 1 1 0 DNA polymerase (viral) N-terminal domain DUF1072 PF06380.6 gi|257372970|ref|YP_003175744.1| - 0.21 11.2 3.9 0.95 9.1 0.1 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF1072) Beta-APP PF03494.8 gi|257372970|ref|YP_003175744.1| - 2.3 7.7 5.0 5.1 6.6 3.5 1.5 1 0 0 1 1 1 0 Beta-amyloid peptide (beta-APP) DUF3169 PF11368.3 gi|257372970|ref|YP_003175744.1| - 9.1 5.4 10.2 1.4 8.0 3.9 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF3169) Gly-zipper_YMGG PF13441.1 gi|257372970|ref|YP_003175744.1| - 9.5 5.8 15.3 3.1 7.3 7.9 2.1 2 1 0 2 2 2 0 YMGG-like Gly-zipper PQQ_3 PF13570.1 gi|257372971|ref|YP_003175745.1| - 1.2e-79 260.5 58.1 1e-14 54.2 0.6 8.8 8 0 0 8 8 8 8 PQQ-like domain PQQ PF01011.16 gi|257372971|ref|YP_003175745.1| - 2.4e-60 197.2 32.5 8.5e-10 37.6 0.3 8.5 9 0 0 9 9 9 7 PQQ enzyme repeat PQQ_2 PF13360.1 gi|257372971|ref|YP_003175745.1| - 8e-60 202.2 23.3 9.4e-24 84.1 2.0 4.3 1 1 3 4 4 4 4 PQQ-like domain Pkinase PF00069.20 gi|257372971|ref|YP_003175745.1| - 3.9e-27 95.0 0.0 5.7e-27 94.4 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain HEAT_2 PF13646.1 gi|257372971|ref|YP_003175745.1| - 5.9e-12 45.7 18.9 1.5e-06 28.3 6.4 2.7 2 0 0 2 2 2 2 HEAT repeats Pkinase_Tyr PF07714.12 gi|257372971|ref|YP_003175745.1| - 1.4e-10 40.6 0.0 2.1e-10 40.1 0.0 1.2 1 0 0 1 1 1 1 Protein tyrosine kinase HEAT_EZ PF13513.1 gi|257372971|ref|YP_003175745.1| - 7.3e-10 39.0 29.3 7.6e-05 23.0 2.2 5.0 1 1 3 4 4 4 4 HEAT-like repeat Adaptin_N PF01602.15 gi|257372971|ref|YP_003175745.1| - 1.8e-08 33.1 0.0 0.0017 16.8 0.0 2.1 1 1 0 2 2 2 2 Adaptin N terminal region HEAT PF02985.17 gi|257372971|ref|YP_003175745.1| - 0.00065 19.5 14.5 0.59 10.3 0.0 5.0 5 0 0 5 5 5 3 HEAT repeat Arm PF00514.18 gi|257372971|ref|YP_003175745.1| - 0.0046 16.7 1.3 1.2 9.0 0.2 3.3 3 0 0 3 3 3 1 Armadillo/beta-catenin-like repeat DUF4394 PF14339.1 gi|257372971|ref|YP_003175745.1| - 0.023 13.9 1.5 13 4.9 0.0 4.0 2 1 2 4 4 4 0 Domain of unknown function (DUF4394) API5 PF05918.6 gi|257372971|ref|YP_003175745.1| - 0.026 13.0 0.4 1.4 7.3 0.1 2.1 2 0 0 2 2 2 0 Apoptosis inhibitory protein 5 (API5) Cnd1 PF12717.2 gi|257372971|ref|YP_003175745.1| - 0.11 12.3 0.0 7 6.4 0.0 2.2 2 0 0 2 2 2 0 non-SMC mitotic condensation complex subunit 1 CLASP_N PF12348.3 gi|257372971|ref|YP_003175745.1| - 0.3 10.3 0.0 1.3 8.3 0.0 1.8 2 0 0 2 2 2 0 CLASP N terminal Pkinase PF00069.20 gi|257372972|ref|YP_003175746.1| - 4.6e-27 94.7 0.0 6.1e-27 94.3 0.0 1.1 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.12 gi|257372972|ref|YP_003175746.1| - 2.8e-15 56.0 0.0 3.5e-15 55.7 0.0 1.1 1 0 0 1 1 1 1 Protein tyrosine kinase CENP-B_N PF04218.8 gi|257372972|ref|YP_003175746.1| - 0.16 11.3 1.6 19 4.7 0.2 3.0 3 0 0 3 3 3 0 CENP-B N-terminal DNA-binding domain CsoS2_M PF12288.3 gi|257372972|ref|YP_003175746.1| - 0.68 9.0 6.9 0.72 8.9 0.4 2.3 1 1 0 2 2 2 0 Carboxysome shell peptide mid-region Cpn60_TCP1 PF00118.19 gi|257372973|ref|YP_003175747.1| - 6.4e-12 44.8 0.0 3.4e-08 32.5 0.0 2.1 1 1 1 2 2 2 2 TCP-1/cpn60 chaperonin family OrfB_Zn_ribbon PF07282.6 gi|257372974|ref|YP_003175748.1| - 8.8e-21 73.3 1.4 1.8e-20 72.3 1.0 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|257372974|ref|YP_003175748.1| - 1.9e-13 50.3 0.0 2.7e-13 49.8 0.0 1.2 1 0 0 1 1 1 1 Probable transposase IBR PF01485.16 gi|257372974|ref|YP_003175748.1| - 0.0075 16.1 0.7 0.014 15.2 0.5 1.4 1 0 0 1 1 1 1 IBR domain DUF2283 PF10049.4 gi|257372974|ref|YP_003175748.1| - 0.044 13.6 0.1 0.098 12.5 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2283) Mrr_cat PF04471.7 gi|257372975|ref|YP_003175749.1| - 2.2e-25 88.7 0.1 4.2e-25 87.7 0.0 1.5 1 0 0 1 1 1 1 Restriction endonuclease Fic PF02661.13 gi|257372976|ref|YP_003175750.1| - 2.1e-09 37.9 0.1 1.7e-08 35.0 0.0 2.3 2 1 0 2 2 2 1 Fic/DOC family HypA PF01155.14 gi|257372978|ref|YP_003175752.1| - 0.00091 18.8 0.1 0.0013 18.4 0.1 1.3 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family DUF1469 PF07332.6 gi|257372978|ref|YP_003175752.1| - 0.0015 18.2 0.9 0.002 17.8 0.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1469) zinc_ribbon_6 PF14599.1 gi|257372978|ref|YP_003175752.1| - 0.02 14.7 0.0 0.026 14.2 0.0 1.2 1 0 0 1 1 1 0 Zinc-ribbon DUF1761 PF08570.5 gi|257372978|ref|YP_003175752.1| - 0.032 14.2 0.3 0.039 13.9 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1761) DZR PF12773.2 gi|257372978|ref|YP_003175752.1| - 0.033 14.0 2.8 0.07 12.9 2.0 1.5 1 1 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|257372978|ref|YP_003175752.1| - 0.035 13.5 3.1 0.092 12.2 2.3 1.5 1 1 1 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|257372978|ref|YP_003175752.1| - 0.04 13.1 6.0 0.32 10.2 4.3 2.1 1 1 1 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|257372978|ref|YP_003175752.1| - 0.058 12.7 3.8 0.1 11.9 2.7 1.4 1 0 0 1 1 1 0 TFIIB zinc-binding zinc_ribbon_4 PF13717.1 gi|257372978|ref|YP_003175752.1| - 0.062 13.0 3.0 0.52 10.0 2.1 2.1 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|257372978|ref|YP_003175752.1| - 0.068 12.7 3.4 0.51 9.9 2.3 2.0 1 1 0 1 1 1 0 zinc-ribbon domain NfeD PF01957.13 gi|257372978|ref|YP_003175752.1| - 0.069 13.2 0.3 0.091 12.9 0.2 1.1 1 0 0 1 1 1 0 NfeD-like C-terminal, partner-binding zf-RING_3 PF14369.1 gi|257372978|ref|YP_003175752.1| - 0.12 12.4 1.2 0.43 10.6 0.1 2.1 2 0 0 2 2 2 0 zinc-finger OrfB_Zn_ribbon PF07282.6 gi|257372978|ref|YP_003175752.1| - 0.15 11.7 0.4 0.26 10.9 0.3 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DUF1451 PF07295.6 gi|257372978|ref|YP_003175752.1| - 0.17 11.6 0.1 0.21 11.3 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) UPF0547 PF10571.4 gi|257372978|ref|YP_003175752.1| - 0.24 11.1 0.3 0.24 11.1 0.2 1.9 1 1 1 2 2 2 0 Uncharacterised protein family UPF0547 zf-TFIIB PF13453.1 gi|257372978|ref|YP_003175752.1| - 0.59 9.3 2.8 1.3 8.2 1.9 1.6 1 1 0 1 1 1 0 Transcription factor zinc-finger zf-LITAF-like PF10601.4 gi|257372978|ref|YP_003175752.1| - 0.61 9.9 2.4 5.1 7.0 0.1 2.9 3 0 0 3 3 3 0 LITAF-like zinc ribbon domain ADK_lid PF05191.9 gi|257372978|ref|YP_003175752.1| - 1.4 8.6 3.5 5.6 6.7 2.4 1.8 1 1 0 1 1 1 0 Adenylate kinase, active site lid Zn-ribbon_8 PF09723.5 gi|257372978|ref|YP_003175752.1| - 2.3 8.2 4.9 3.6 7.6 0.3 2.2 1 1 0 2 2 2 0 Zinc ribbon domain Pkinase PF00069.20 gi|257372979|ref|YP_003175753.1| - 1.2e-31 109.8 0.0 1.5e-31 109.5 0.0 1.1 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.12 gi|257372979|ref|YP_003175753.1| - 3.2e-24 85.3 0.0 4.1e-24 85.0 0.0 1.0 1 0 0 1 1 1 1 Protein tyrosine kinase Kinase-like PF14531.1 gi|257372979|ref|YP_003175753.1| - 0.0059 15.5 0.0 0.0076 15.2 0.0 1.1 1 0 0 1 1 1 1 Kinase-like APH PF01636.18 gi|257372979|ref|YP_003175753.1| - 0.04 13.6 0.0 0.29 10.8 0.0 2.1 1 1 0 2 2 2 0 Phosphotransferase enzyme family PQQ_3 PF13570.1 gi|257372980|ref|YP_003175754.1| - 1.9e-65 215.4 49.0 4.1e-12 45.9 1.2 8.9 8 0 0 8 8 8 8 PQQ-like domain PQQ_2 PF13360.1 gi|257372980|ref|YP_003175754.1| - 1.7e-57 194.6 30.1 2.7e-27 95.7 4.6 4.0 1 1 3 4 4 4 4 PQQ-like domain PQQ PF01011.16 gi|257372980|ref|YP_003175754.1| - 9.1e-43 141.7 19.6 1.7e-07 30.4 0.4 8.0 8 0 0 8 8 8 7 PQQ enzyme repeat Pkinase PF00069.20 gi|257372980|ref|YP_003175754.1| - 3e-27 95.4 0.0 4.3e-27 94.8 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.12 gi|257372980|ref|YP_003175754.1| - 3.5e-13 49.2 0.0 5.7e-13 48.5 0.0 1.3 1 0 0 1 1 1 1 Protein tyrosine kinase CbiA PF01656.18 gi|257372981|ref|YP_003175755.1| - 3.4e-27 95.1 0.0 4.3e-27 94.8 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|257372981|ref|YP_003175755.1| - 1.9e-09 37.6 0.0 1e-08 35.2 0.0 1.9 1 1 0 1 1 1 1 AAA domain MipZ PF09140.6 gi|257372981|ref|YP_003175755.1| - 1.2e-06 27.8 0.4 7.4e-05 21.9 0.1 2.3 1 1 0 2 2 2 1 ATPase MipZ YhjQ PF06564.7 gi|257372981|ref|YP_003175755.1| - 0.00075 18.9 0.1 0.0013 18.1 0.0 1.3 1 1 0 1 1 1 1 YhjQ protein ArsA_ATPase PF02374.10 gi|257372981|ref|YP_003175755.1| - 0.00077 18.5 0.1 0.0014 17.7 0.1 1.6 1 1 0 1 1 1 1 Anion-transporting ATPase AAA_17 PF13207.1 gi|257372981|ref|YP_003175755.1| - 0.001 19.8 2.0 0.0067 17.2 0.1 2.4 2 1 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|257372981|ref|YP_003175755.1| - 0.0023 17.4 0.1 0.013 14.9 0.0 1.9 1 1 1 2 2 2 1 AAA-like domain SRP54 PF00448.17 gi|257372981|ref|YP_003175755.1| - 0.0023 17.3 0.0 0.0046 16.4 0.0 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain MobB PF03205.9 gi|257372981|ref|YP_003175755.1| - 0.0063 16.2 0.0 0.013 15.2 0.0 1.5 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_18 PF13238.1 gi|257372981|ref|YP_003175755.1| - 0.013 15.8 0.0 0.027 14.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain Fer4_NifH PF00142.13 gi|257372981|ref|YP_003175755.1| - 0.013 14.7 0.0 0.029 13.5 0.0 1.6 2 0 0 2 2 2 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family IstB_IS21 PF01695.12 gi|257372981|ref|YP_003175755.1| - 0.014 14.8 0.0 0.026 13.9 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_25 PF13481.1 gi|257372981|ref|YP_003175755.1| - 0.016 14.6 0.3 0.048 13.0 0.2 1.9 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|257372981|ref|YP_003175755.1| - 0.016 14.9 0.0 0.034 13.8 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain ATP_bind_1 PF03029.12 gi|257372981|ref|YP_003175755.1| - 0.065 12.7 0.0 0.12 11.8 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_14 PF13173.1 gi|257372981|ref|YP_003175755.1| - 0.079 12.8 0.0 0.22 11.4 0.0 1.7 1 0 0 1 1 1 0 AAA domain NHase_alpha PF02979.11 gi|257372981|ref|YP_003175755.1| - 0.1 11.8 0.0 0.18 11.0 0.0 1.5 1 0 0 1 1 1 0 Nitrile hydratase, alpha chain AAA_24 PF13479.1 gi|257372981|ref|YP_003175755.1| - 0.13 11.8 0.4 0.29 10.6 0.2 1.7 1 1 0 1 1 1 0 AAA domain DUF3567 PF12091.3 gi|257372981|ref|YP_003175755.1| - 0.13 12.2 0.0 0.29 11.1 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3567) MLTD_N PF06474.7 gi|257372983|ref|YP_003175757.1| - 0.073 13.2 0.6 0.26 11.5 0.4 2.1 1 0 0 1 1 1 0 MltD lipid attachment motif Hemerythrin PF01814.18 gi|257372983|ref|YP_003175757.1| - 8.1 6.6 8.6 15 5.7 1.6 3.4 2 1 1 3 3 3 0 Hemerythrin HHE cation binding domain Pkinase PF00069.20 gi|257372985|ref|YP_003175759.1| - 6.7e-29 100.8 0.0 9.3e-29 100.3 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.12 gi|257372985|ref|YP_003175759.1| - 7.6e-22 77.6 0.0 1.4e-21 76.7 0.0 1.4 1 0 0 1 1 1 1 Protein tyrosine kinase HEAT_2 PF13646.1 gi|257372985|ref|YP_003175759.1| - 6.6e-09 35.9 33.6 0.0092 16.2 0.2 7.1 2 1 4 6 6 6 4 HEAT repeats Adaptin_N PF01602.15 gi|257372985|ref|YP_003175759.1| - 2.4e-06 26.1 0.0 0.033 12.5 0.1 2.7 2 1 0 3 3 3 2 Adaptin N terminal region HEAT PF02985.17 gi|257372985|ref|YP_003175759.1| - 0.04 14.0 4.2 13 6.2 0.1 5.3 6 0 0 6 6 6 0 HEAT repeat Cnd1 PF12717.2 gi|257372985|ref|YP_003175759.1| - 0.083 12.7 0.1 0.99 9.2 0.0 2.2 2 0 0 2 2 2 0 non-SMC mitotic condensation complex subunit 1 HEAT_EZ PF13513.1 gi|257372985|ref|YP_003175759.1| - 1.2 9.7 25.3 0.078 13.5 0.6 6.2 6 0 0 6 6 6 0 HEAT-like repeat Asp_protease_2 PF13650.1 gi|257372986|ref|YP_003175760.1| - 8.2e-05 23.0 0.9 0.00011 22.5 0.6 1.2 1 0 0 1 1 1 1 Aspartyl protease Zn_protease PF05618.6 gi|257372986|ref|YP_003175760.1| - 0.00029 20.5 0.2 0.18 11.4 0.0 2.1 1 1 1 2 2 2 2 Putative ATP-dependant zinc protease RVP PF00077.15 gi|257372986|ref|YP_003175760.1| - 0.021 14.7 0.2 0.047 13.6 0.2 1.8 1 1 0 1 1 1 0 Retroviral aspartyl protease gag-asp_proteas PF13975.1 gi|257372986|ref|YP_003175760.1| - 0.052 13.3 0.2 0.11 12.3 0.1 1.6 1 0 0 1 1 1 0 gag-polyprotein putative aspartyl protease UvrD-helicase PF00580.16 gi|257372988|ref|YP_003175762.1| - 8.7e-16 58.1 0.0 1.6e-15 57.2 0.0 1.3 1 1 0 1 1 1 1 UvrD/REP helicase N-terminal domain PDDEXK_1 PF12705.2 gi|257372988|ref|YP_003175762.1| - 1.9e-09 37.2 0.7 3.1e-08 33.3 0.0 2.9 3 0 0 3 3 3 1 PD-(D/E)XK nuclease superfamily UvrD_C PF13361.1 gi|257372988|ref|YP_003175762.1| - 2.6e-08 33.7 0.0 4.6e-08 32.9 0.0 1.4 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain UvrD_C_2 PF13538.1 gi|257372988|ref|YP_003175762.1| - 2.8e-07 30.5 0.2 0.006 16.7 0.2 2.6 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain AAA_30 PF13604.1 gi|257372988|ref|YP_003175762.1| - 3.8e-07 29.8 2.8 0.00057 19.5 0.2 3.0 3 0 0 3 3 3 2 AAA domain AAA_19 PF13245.1 gi|257372988|ref|YP_003175762.1| - 0.0005 19.7 1.6 0.002 17.8 0.3 2.7 2 0 0 2 2 2 1 Part of AAA domain AAA_22 PF13401.1 gi|257372988|ref|YP_003175762.1| - 0.004 17.3 0.1 3.8 7.6 0.0 3.0 2 1 0 2 2 2 2 AAA domain AAA_11 PF13086.1 gi|257372988|ref|YP_003175762.1| - 0.035 13.6 0.3 0.066 12.7 0.2 1.4 1 0 0 1 1 1 0 AAA domain Viral_helicase1 PF01443.13 gi|257372988|ref|YP_003175762.1| - 0.22 10.9 1.7 11 5.4 0.0 3.2 3 0 0 3 3 3 0 Viral (Superfamily 1) RNA helicase Peripla_BP_2 PF01497.13 gi|257372989|ref|YP_003175763.1| - 3.7e-14 52.4 0.0 5.8e-14 51.7 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein PAS_4 PF08448.5 gi|257372990|ref|YP_003175764.1| - 4.8e-55 184.2 22.5 1.2e-15 57.5 0.2 6.6 6 1 0 6 6 5 4 PAS fold PAS_9 PF13426.1 gi|257372990|ref|YP_003175764.1| - 2.2e-50 169.3 6.0 8.7e-16 58.1 0.0 5.7 5 0 0 5 5 5 5 PAS domain PAS PF00989.19 gi|257372990|ref|YP_003175764.1| - 3e-44 149.4 5.5 4.3e-19 68.3 0.0 6.2 5 1 0 5 5 5 5 PAS fold HATPase_c PF02518.21 gi|257372990|ref|YP_003175764.1| - 1.4e-21 76.2 0.3 3e-21 75.2 0.2 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.6 gi|257372990|ref|YP_003175764.1| - 9.1e-21 73.7 4.4 2.1e-10 40.5 0.2 4.2 4 0 0 4 4 4 2 PAS fold PAS_8 PF13188.1 gi|257372990|ref|YP_003175764.1| - 3.8e-20 70.9 0.5 3.5e-06 26.6 0.0 5.2 4 0 0 4 4 4 3 PAS domain GAF_3 PF13492.1 gi|257372990|ref|YP_003175764.1| - 1.2e-16 61.0 0.8 2.9e-09 37.1 0.0 3.7 4 0 0 4 4 4 2 GAF domain GAF_2 PF13185.1 gi|257372990|ref|YP_003175764.1| - 9.2e-14 52.1 7.3 1.1e-05 26.0 0.1 4.4 3 1 0 3 3 3 2 GAF domain Response_reg PF00072.19 gi|257372990|ref|YP_003175764.1| - 1.1e-13 51.1 0.0 2.7e-13 49.9 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain HisKA PF00512.20 gi|257372990|ref|YP_003175764.1| - 1.8e-11 43.8 0.2 1.8e-11 43.8 0.1 3.4 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain GAF PF01590.21 gi|257372990|ref|YP_003175764.1| - 1.5e-07 31.6 0.1 0.0002 21.4 0.0 3.1 2 0 0 2 2 2 2 GAF domain PAS_10 PF13596.1 gi|257372990|ref|YP_003175764.1| - 2.1e-05 24.7 0.0 0.0053 17.0 0.0 4.0 4 1 0 4 4 3 1 PAS domain HATPase_c_3 PF13589.1 gi|257372990|ref|YP_003175764.1| - 0.0018 17.9 0.0 0.0045 16.6 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OKR_DC_1_N PF03709.10 gi|257372990|ref|YP_003175764.1| - 0.031 14.3 0.1 0.1 12.6 0.1 1.9 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain Polyketide_cyc2 PF10604.4 gi|257372991|ref|YP_003175765.1| - 0.047 13.8 0.8 0.64 10.1 0.4 2.2 1 1 1 2 2 2 0 Polyketide cyclase / dehydrase and lipid transport DUF1939 PF09154.5 gi|257372991|ref|YP_003175765.1| - 0.1 12.5 0.2 0.21 11.5 0.1 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF1939) TroA PF01297.12 gi|257372992|ref|YP_003175766.1| - 1.5e-43 148.9 0.3 1.8e-43 148.6 0.2 1.0 1 0 0 1 1 1 1 Periplasmic solute binding protein family TAT_signal PF10518.4 gi|257372992|ref|YP_003175766.1| - 1.2 9.3 4.9 2.5 8.3 3.4 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence ABC_tran PF00005.22 gi|257372993|ref|YP_003175767.1| - 1.2e-30 106.5 0.0 1.7e-30 106.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|257372993|ref|YP_003175767.1| - 1.7e-11 44.6 0.0 1.9e-05 24.7 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|257372993|ref|YP_003175767.1| - 2.8e-05 23.5 0.0 9.2e-05 21.9 0.0 1.8 2 0 0 2 2 2 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|257372993|ref|YP_003175767.1| - 0.00012 21.4 0.0 0.011 14.9 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_10 PF12846.2 gi|257372993|ref|YP_003175767.1| - 0.00061 19.3 0.4 0.00099 18.6 0.2 1.6 1 1 0 1 1 1 1 AAA-like domain AAA_22 PF13401.1 gi|257372993|ref|YP_003175767.1| - 0.0009 19.3 0.0 0.14 12.2 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|257372993|ref|YP_003175767.1| - 0.0012 18.8 0.1 0.0043 17.0 0.1 1.8 1 1 0 1 1 1 1 AAA ATPase domain SbcCD_C PF13558.1 gi|257372993|ref|YP_003175767.1| - 0.0028 17.5 0.7 0.056 13.3 0.5 2.4 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_17 PF13207.1 gi|257372993|ref|YP_003175767.1| - 0.0058 17.4 0.0 0.036 14.8 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|257372993|ref|YP_003175767.1| - 0.0059 16.9 0.0 0.0089 16.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain ABC_ATPase PF09818.4 gi|257372993|ref|YP_003175767.1| - 0.0063 15.1 0.1 1.9 6.9 0.0 3.0 2 1 0 2 2 2 1 Predicted ATPase of the ABC class ArgK PF03308.11 gi|257372993|ref|YP_003175767.1| - 0.0077 15.0 0.1 0.012 14.4 0.1 1.2 1 0 0 1 1 1 1 ArgK protein MobB PF03205.9 gi|257372993|ref|YP_003175767.1| - 0.008 15.8 0.0 0.017 14.7 0.0 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_33 PF13671.1 gi|257372993|ref|YP_003175767.1| - 0.013 15.3 0.0 0.022 14.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|257372993|ref|YP_003175767.1| - 0.014 14.7 0.1 0.066 12.6 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|257372993|ref|YP_003175767.1| - 0.024 14.1 0.0 0.074 12.6 0.0 1.9 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|257372993|ref|YP_003175767.1| - 0.035 13.7 0.0 0.055 13.1 0.0 1.3 1 0 0 1 1 1 0 NACHT domain AAA_19 PF13245.1 gi|257372993|ref|YP_003175767.1| - 0.059 13.1 0.0 0.18 11.5 0.0 1.8 1 0 0 1 1 1 0 Part of AAA domain DUF87 PF01935.12 gi|257372993|ref|YP_003175767.1| - 0.085 12.6 0.0 0.16 11.7 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function DUF87 Spore_IV_A PF09547.5 gi|257372993|ref|YP_003175767.1| - 0.098 11.3 0.0 0.14 10.8 0.0 1.1 1 0 0 1 1 1 0 Stage IV sporulation protein A (spore_IV_A) DUF3987 PF13148.1 gi|257372993|ref|YP_003175767.1| - 0.1 11.1 0.0 0.15 10.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) MMR_HSR1 PF01926.18 gi|257372993|ref|YP_003175767.1| - 0.16 11.9 0.0 0.24 11.3 0.0 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase ABC-3 PF00950.12 gi|257372994|ref|YP_003175768.1| - 1.2e-56 191.9 40.1 1.4e-56 191.7 27.8 1.0 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.13 gi|257372994|ref|YP_003175768.1| - 0.063 12.0 40.6 0.012 14.5 25.0 1.9 1 1 1 2 2 2 0 FecCD transport family DUF2407_C PF13373.1 gi|257372994|ref|YP_003175768.1| - 1 9.2 3.9 0.67 9.8 0.9 2.0 2 0 0 2 2 2 0 DUF2407 C-terminal domain Phage_int_SAM_4 PF13495.1 gi|257372995|ref|YP_003175769.1| - 4.3e-06 26.9 0.1 0.0022 18.2 0.0 2.4 1 1 1 2 2 2 2 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.12 gi|257372995|ref|YP_003175769.1| - 1.9e-05 24.7 2.3 0.82 9.8 0.0 3.8 2 1 2 4 4 4 3 Phage integrase, N-terminal SAM-like domain DDE_Tnp_IS1595 PF12762.2 gi|257372996|ref|YP_003175770.1| - 1.1e-23 83.7 0.0 1.5e-23 83.2 0.0 1.2 1 0 0 1 1 1 1 ISXO2-like transposase domain Zn_Tnp_IS1595 PF12760.2 gi|257372996|ref|YP_003175770.1| - 4e-10 39.3 0.9 8.8e-10 38.2 0.6 1.6 1 0 0 1 1 1 1 Transposase zinc-ribbon domain DUF2089 PF09862.4 gi|257372996|ref|YP_003175770.1| - 4.5e-06 26.4 0.0 6.5e-06 25.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2089) Zn_Tnp_IS1 PF03811.8 gi|257372996|ref|YP_003175770.1| - 0.00014 21.2 3.9 0.00045 19.6 2.7 1.8 1 0 0 1 1 1 1 InsA N-terminal domain HTH_23 PF13384.1 gi|257372996|ref|YP_003175770.1| - 0.0023 17.5 0.0 0.0077 15.8 0.0 1.9 1 0 0 1 1 1 1 Homeodomain-like domain ADK_lid PF05191.9 gi|257372996|ref|YP_003175770.1| - 0.014 15.0 0.1 0.014 15.0 0.1 2.1 2 0 0 2 2 2 0 Adenylate kinase, active site lid HTH_29 PF13551.1 gi|257372996|ref|YP_003175770.1| - 0.032 14.3 0.0 0.14 12.3 0.0 2.0 2 0 0 2 2 2 0 Winged helix-turn helix HTH_28 PF13518.1 gi|257372996|ref|YP_003175770.1| - 0.035 14.1 0.1 0.22 11.5 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain Prok-RING_1 PF14446.1 gi|257372996|ref|YP_003175770.1| - 0.042 13.5 0.3 1.2 8.8 0.0 2.2 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 zinc-ribbons_6 PF07191.7 gi|257372996|ref|YP_003175770.1| - 0.052 13.3 0.1 0.1 12.3 0.1 1.5 1 0 0 1 1 1 0 zinc-ribbons Zn-ribbon_8 PF09723.5 gi|257372996|ref|YP_003175770.1| - 0.054 13.4 2.1 11 6.1 0.3 2.7 2 0 0 2 2 2 0 Zinc ribbon domain HTH_11 PF08279.7 gi|257372996|ref|YP_003175770.1| - 0.071 12.7 0.0 0.14 11.8 0.0 1.5 1 0 0 1 1 1 0 HTH domain GerE PF00196.14 gi|257372996|ref|YP_003175770.1| - 0.076 12.3 0.0 0.19 11.0 0.0 1.6 2 0 0 2 2 1 0 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.7 gi|257372996|ref|YP_003175770.1| - 0.082 12.3 0.0 0.25 10.8 0.0 1.8 1 0 0 1 1 1 0 Sigma-70, region 4 zf-C4_Topoisom PF01396.14 gi|257372996|ref|YP_003175770.1| - 0.094 12.2 1.0 0.19 11.2 0.7 1.5 1 0 0 1 1 1 0 Topoisomerase DNA binding C4 zinc finger HNH_5 PF14279.1 gi|257372996|ref|YP_003175770.1| - 0.096 12.6 0.1 0.21 11.6 0.0 1.6 1 0 0 1 1 1 0 HNH endonuclease zf-C2HC_2 PF13913.1 gi|257372996|ref|YP_003175770.1| - 0.11 12.1 0.6 0.11 12.1 0.4 2.4 2 0 0 2 2 2 0 zinc-finger of a C2HC-type Auxin_inducible PF02519.9 gi|257372996|ref|YP_003175770.1| - 0.13 12.2 0.0 0.25 11.4 0.0 1.4 1 0 0 1 1 1 0 Auxin responsive protein zf-Dof PF02701.10 gi|257372996|ref|YP_003175770.1| - 0.17 11.8 3.9 0.33 10.9 2.7 1.4 1 0 0 1 1 1 0 Dof domain, zinc finger zf-ISL3 PF14690.1 gi|257372996|ref|YP_003175770.1| - 0.46 10.5 5.1 9.9 6.2 0.1 2.8 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-C2H2_6 PF13912.1 gi|257372996|ref|YP_003175770.1| - 0.72 9.8 4.2 0.44 10.5 0.2 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger Zn_ribbon_recom PF13408.1 gi|257372996|ref|YP_003175770.1| - 2.3 8.5 5.6 5.9 7.2 3.9 1.8 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain Reprolysin_4 PF13583.1 gi|257372997|ref|YP_003175771.1| - 0.011 15.3 0.6 2.6 7.5 0.0 2.6 2 0 0 2 2 2 0 Metallo-peptidase family M12B Reprolysin-like Metal_resist PF13801.1 gi|257372998|ref|YP_003175772.1| - 0.14 12.1 0.1 0.19 11.7 0.1 1.2 1 0 0 1 1 1 0 Heavy-metal resistance DDE_Tnp_1 PF01609.16 gi|257372999|ref|YP_003175773.1| - 3e-15 56.3 0.3 5.7e-15 55.4 0.2 1.4 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.1 gi|257372999|ref|YP_003175773.1| - 6.8e-06 26.1 0.1 1.4e-05 25.1 0.0 1.5 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.1 gi|257372999|ref|YP_003175773.1| - 0.016 14.9 0.0 0.023 14.4 0.0 1.2 1 0 0 1 1 1 0 Transposase DDE domain SHOCT PF09851.4 gi|257373000|ref|YP_003175774.1| - 4.5e-08 32.2 0.1 6.8e-08 31.7 0.1 1.3 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.6 gi|257373000|ref|YP_003175774.1| - 9.2e-05 22.1 3.8 0.00018 21.2 2.5 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF1707) GvpG PF05120.7 gi|257373000|ref|YP_003175774.1| - 0.012 15.4 1.2 0.044 13.6 0.9 1.8 1 1 0 1 1 1 0 Gas vesicle protein G Nha1_C PF08619.5 gi|257373000|ref|YP_003175774.1| - 0.087 12.0 0.9 0.11 11.7 0.7 1.1 1 0 0 1 1 1 0 Alkali metal cation/H+ antiporter Nha1 C terminus TAFH PF07531.9 gi|257373000|ref|YP_003175774.1| - 0.094 12.3 0.0 0.16 11.5 0.0 1.4 1 0 0 1 1 1 0 NHR1 homology to TAF SelB-wing_2 PF09106.6 gi|257373000|ref|YP_003175774.1| - 0.11 12.3 0.5 0.18 11.7 0.3 1.3 1 0 0 1 1 1 0 Elongation factor SelB, winged helix DUF4006 PF13179.1 gi|257373000|ref|YP_003175774.1| - 3.6 7.1 5.1 5.7 6.5 3.5 1.4 1 1 0 1 1 1 0 Family of unknown function (DUF4006) DUF302 PF03625.9 gi|257373001|ref|YP_003175775.1| - 2.1e-20 72.0 0.0 3.2e-20 71.4 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF302 Methyltransf_11 PF08241.7 gi|257373002|ref|YP_003175776.1| - 1.5e-16 60.6 0.1 2.3e-16 60.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|257373002|ref|YP_003175776.1| - 2.4e-09 36.9 0.0 3e-09 36.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|257373002|ref|YP_003175776.1| - 1.3e-08 35.0 0.1 2.6e-08 34.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|257373002|ref|YP_003175776.1| - 1.3e-07 31.5 0.0 2.9e-07 30.3 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|257373002|ref|YP_003175776.1| - 1.8e-07 31.6 0.1 4.8e-07 30.3 0.1 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|257373002|ref|YP_003175776.1| - 5.5e-06 26.4 0.4 1.1e-05 25.3 0.3 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|257373002|ref|YP_003175776.1| - 6e-05 22.2 0.0 8.6e-05 21.7 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.7 gi|257373002|ref|YP_003175776.1| - 0.0015 18.9 0.1 0.0028 18.0 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.10 gi|257373002|ref|YP_003175776.1| - 0.002 17.8 0.0 0.0044 16.6 0.0 1.7 1 1 0 1 1 1 1 Hypothetical methyltransferase RrnaAD PF00398.15 gi|257373002|ref|YP_003175776.1| - 0.02 13.9 0.0 0.026 13.5 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase DREV PF05219.7 gi|257373002|ref|YP_003175776.1| - 0.067 12.0 0.0 0.091 11.6 0.0 1.2 1 0 0 1 1 1 0 DREV methyltransferase IucA_IucC PF04183.7 gi|257373003|ref|YP_003175777.1| - 1e-69 234.5 0.0 1.6e-69 233.9 0.0 1.3 1 0 0 1 1 1 1 IucA / IucC family FhuF PF06276.7 gi|257373003|ref|YP_003175777.1| - 4.4e-35 121.0 0.1 8.2e-35 120.1 0.1 1.4 1 0 0 1 1 1 1 Ferric iron reductase FhuF-like transporter Aminotran_3 PF00202.16 gi|257373004|ref|YP_003175778.1| - 2e-85 286.6 0.0 2.4e-85 286.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.16 gi|257373004|ref|YP_003175778.1| - 0.04 12.8 0.0 0.18 10.7 0.0 1.9 2 0 0 2 2 2 0 Aminotransferase class I and II Pyridoxal_deC PF00282.14 gi|257373005|ref|YP_003175779.1| - 1.2e-58 198.3 0.0 1.4e-58 198.1 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.14 gi|257373005|ref|YP_003175779.1| - 0.0027 16.5 0.0 0.0054 15.5 0.0 1.4 1 0 0 1 1 1 1 Aminotransferase class-V DUF814 PF05670.8 gi|257373005|ref|YP_003175779.1| - 0.19 11.6 0.0 0.38 10.6 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF814) IucA_IucC PF04183.7 gi|257373006|ref|YP_003175780.1| - 8e-66 221.8 0.0 1.1e-65 221.3 0.0 1.2 1 0 0 1 1 1 1 IucA / IucC family FhuF PF06276.7 gi|257373006|ref|YP_003175780.1| - 9.5e-37 126.4 0.3 1.8e-36 125.5 0.2 1.5 1 0 0 1 1 1 1 Ferric iron reductase FhuF-like transporter Acetyltransf_8 PF13523.1 gi|257373007|ref|YP_003175781.1| - 3.6e-41 140.5 0.1 4.5e-41 140.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|257373007|ref|YP_003175781.1| - 2.2e-09 37.5 0.0 4.1e-09 36.7 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|257373007|ref|YP_003175781.1| - 0.002 18.1 0.0 0.0028 17.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family FR47 PF08445.5 gi|257373007|ref|YP_003175781.1| - 0.029 14.1 0.0 0.074 12.8 0.0 1.7 2 0 0 2 2 2 0 FR47-like protein PG_binding_2 PF08823.6 gi|257373007|ref|YP_003175781.1| - 0.066 13.3 0.0 0.12 12.4 0.0 1.4 1 0 0 1 1 1 0 Putative peptidoglycan binding domain K_oxygenase PF13434.1 gi|257373008|ref|YP_003175782.1| - 2.1e-111 372.1 0.0 2.4e-111 371.9 0.0 1.0 1 0 0 1 1 1 1 L-lysine 6-monooxygenase (NADPH-requiring) Pyr_redox_3 PF13738.1 gi|257373008|ref|YP_003175782.1| - 1.4e-11 44.8 0.0 8.8e-10 38.9 0.0 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|257373008|ref|YP_003175782.1| - 1.5e-05 24.8 0.3 0.039 13.7 0.0 3.3 3 0 0 3 3 3 2 FAD-NAD(P)-binding Pyr_redox_2 PF07992.9 gi|257373008|ref|YP_003175782.1| - 0.00019 21.3 0.0 0.0003 20.7 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase IucA_IucC PF04183.7 gi|257373009|ref|YP_003175783.1| - 9.8e-67 224.8 0.0 1.5e-66 224.1 0.0 1.3 1 0 0 1 1 1 1 IucA / IucC family FhuF PF06276.7 gi|257373009|ref|YP_003175783.1| - 2.2e-32 112.2 0.1 6.8e-32 110.6 0.1 1.9 2 0 0 2 2 2 1 Ferric iron reductase FhuF-like transporter Polysacc_deac_1 PF01522.16 gi|257373010|ref|YP_003175784.1| - 1.6e-24 85.8 0.0 2.5e-24 85.2 0.0 1.4 1 0 0 1 1 1 1 Polysaccharide deacetylase MatE PF01554.13 gi|257373012|ref|YP_003175786.1| - 8.4e-59 197.8 31.0 7.6e-34 116.6 9.9 2.2 2 0 0 2 2 2 2 MatE Polysacc_synt_C PF14667.1 gi|257373012|ref|YP_003175786.1| - 6.4e-11 42.2 5.5 6.4e-11 42.2 3.8 4.8 4 1 0 5 5 5 2 Polysaccharide biosynthesis C-terminal domain Peripla_BP_2 PF01497.13 gi|257373013|ref|YP_003175787.1| - 1.6e-21 76.5 0.0 4.6e-21 75.0 0.0 1.7 1 1 0 1 1 1 1 Periplasmic binding protein OmpA PF00691.15 gi|257373013|ref|YP_003175787.1| - 0.038 14.4 0.0 0.093 13.1 0.0 1.6 1 0 0 1 1 1 0 OmpA family DUF964 PF06133.6 gi|257373015|ref|YP_003175789.1| - 2.6e-15 56.3 16.9 3.3e-15 56.0 11.7 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF964) RGS PF00615.14 gi|257373015|ref|YP_003175789.1| - 0.074 13.1 2.9 0.094 12.8 2.0 1.3 1 0 0 1 1 1 0 Regulator of G protein signaling domain COG2 PF06148.6 gi|257373015|ref|YP_003175789.1| - 0.083 12.7 4.6 0.11 12.3 3.2 1.3 1 0 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 Med28 PF11594.3 gi|257373015|ref|YP_003175789.1| - 0.52 10.5 8.3 1.1 9.5 5.8 1.5 1 1 0 1 1 1 0 Mediator complex subunit 28 DUF4239 PF14023.1 gi|257373015|ref|YP_003175789.1| - 0.63 9.3 2.8 0.81 9.0 2.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4239) MSC PF09402.5 gi|257373015|ref|YP_003175789.1| - 0.66 8.6 5.1 0.76 8.4 3.5 1.1 1 0 0 1 1 1 0 Man1-Src1p-C-terminal domain DUF2115 PF09888.4 gi|257373015|ref|YP_003175789.1| - 1 9.4 4.4 1.6 8.7 3.0 1.4 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2115) OmpH PF03938.9 gi|257373015|ref|YP_003175789.1| - 1.2 9.1 16.3 1.4 8.8 11.3 1.1 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) DUF2508 PF10704.4 gi|257373015|ref|YP_003175789.1| - 1.4 9.1 8.7 4.9 7.3 0.4 3.1 1 1 1 3 3 3 0 Protein of unknown function (DUF2508) DUF416 PF04222.7 gi|257373015|ref|YP_003175789.1| - 1.7 7.7 14.1 0.31 10.1 2.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF416) DUF2756 PF10956.3 gi|257373015|ref|YP_003175789.1| - 2.3 8.5 6.9 2.9 8.2 4.8 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2756) DUF2422 PF10337.4 gi|257373015|ref|YP_003175789.1| - 2.6 6.7 4.7 3.1 6.4 3.3 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2422) Ribonuc_2-5A PF06479.7 gi|257373015|ref|YP_003175789.1| - 2.7 7.8 5.4 3.4 7.5 0.9 2.0 1 1 1 2 2 2 0 Ribonuclease 2-5A PqqD PF05402.7 gi|257373015|ref|YP_003175789.1| - 3.1 7.8 7.9 7.7 6.6 0.0 3.1 2 1 1 3 3 3 0 Coenzyme PQQ synthesis protein D (PqqD) DivIC PF04977.10 gi|257373015|ref|YP_003175789.1| - 3.8 7.0 13.6 0.1 12.1 2.4 2.7 1 1 2 3 3 3 0 Septum formation initiator DUF3450 PF11932.3 gi|257373015|ref|YP_003175789.1| - 6.1 6.0 13.9 6.7 5.9 9.6 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) ArsA_ATPase PF02374.10 gi|257373016|ref|YP_003175790.1| - 1e-166 553.4 0.0 1e-93 313.7 0.0 3.9 2 2 0 2 2 2 2 Anion-transporting ATPase CbiA PF01656.18 gi|257373016|ref|YP_003175790.1| - 2.3e-28 98.9 0.1 6.6e-13 48.5 0.0 2.3 2 0 0 2 2 2 2 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|257373016|ref|YP_003175790.1| - 2e-15 57.0 0.0 7.3e-07 29.2 0.0 2.7 2 1 0 2 2 2 2 AAA domain Fer4_NifH PF00142.13 gi|257373016|ref|YP_003175790.1| - 1.1e-08 34.5 0.0 0.0022 17.2 0.0 2.4 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_25 PF13481.1 gi|257373016|ref|YP_003175790.1| - 3.6e-08 33.0 4.3 0.0016 17.8 0.1 3.6 2 2 0 2 2 2 2 AAA domain AAA_10 PF12846.2 gi|257373016|ref|YP_003175790.1| - 6.8e-07 29.0 0.0 0.018 14.5 0.0 2.6 2 1 0 2 2 2 2 AAA-like domain AAA_16 PF13191.1 gi|257373016|ref|YP_003175790.1| - 6.8e-07 29.4 0.0 0.0028 17.6 0.0 2.5 2 0 0 2 2 2 2 AAA ATPase domain NB-ARC PF00931.17 gi|257373016|ref|YP_003175790.1| - 1.3e-06 27.5 0.1 0.0098 14.7 0.0 2.2 2 0 0 2 2 2 2 NB-ARC domain SRP54 PF00448.17 gi|257373016|ref|YP_003175790.1| - 1.3e-06 27.9 3.7 0.82 9.0 0.1 4.3 4 0 0 4 4 4 2 SRP54-type protein, GTPase domain ArgK PF03308.11 gi|257373016|ref|YP_003175790.1| - 2.7e-06 26.3 0.2 0.00085 18.1 0.0 2.9 3 0 0 3 3 3 1 ArgK protein APS_kinase PF01583.15 gi|257373016|ref|YP_003175790.1| - 5.1e-06 26.2 0.1 0.016 14.8 0.0 2.4 2 0 0 2 2 2 2 Adenylylsulphate kinase PhoH PF02562.11 gi|257373016|ref|YP_003175790.1| - 2e-05 23.9 0.4 0.035 13.3 0.1 2.9 2 2 0 2 2 2 2 PhoH-like protein AAA_17 PF13207.1 gi|257373016|ref|YP_003175790.1| - 5.4e-05 23.9 0.4 0.087 13.6 0.0 3.1 2 1 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|257373016|ref|YP_003175790.1| - 5.5e-05 22.6 0.2 0.43 10.1 0.0 2.6 2 0 0 2 2 2 2 P-loop containing region of AAA domain IstB_IS21 PF01695.12 gi|257373016|ref|YP_003175790.1| - 9.8e-05 21.8 0.0 0.18 11.2 0.0 2.3 2 0 0 2 2 2 2 IstB-like ATP binding protein MobB PF03205.9 gi|257373016|ref|YP_003175790.1| - 0.00016 21.3 0.1 0.64 9.7 0.0 3.0 3 0 0 3 3 3 2 Molybdopterin guanine dinucleotide synthesis protein B AAA_22 PF13401.1 gi|257373016|ref|YP_003175790.1| - 0.00027 21.0 0.0 1.4 9.0 0.0 2.9 2 1 0 2 2 2 2 AAA domain MipZ PF09140.6 gi|257373016|ref|YP_003175790.1| - 0.00034 19.7 4.6 0.8 8.7 0.1 3.8 4 0 0 4 4 4 2 ATPase MipZ DUF258 PF03193.11 gi|257373016|ref|YP_003175790.1| - 0.00048 19.3 0.0 0.24 10.5 0.0 2.4 2 0 0 2 2 2 1 Protein of unknown function, DUF258 AAA_30 PF13604.1 gi|257373016|ref|YP_003175790.1| - 0.00052 19.6 2.1 0.47 10.0 0.7 3.1 3 1 0 3 3 2 2 AAA domain RNA_helicase PF00910.17 gi|257373016|ref|YP_003175790.1| - 0.00056 20.0 0.0 1.3 9.2 0.0 2.6 2 0 0 2 2 2 2 RNA helicase NTPase_1 PF03266.10 gi|257373016|ref|YP_003175790.1| - 0.00079 19.1 1.5 0.19 11.4 0.2 3.2 3 1 0 3 3 3 1 NTPase ATP_bind_1 PF03029.12 gi|257373016|ref|YP_003175790.1| - 0.0012 18.4 0.6 0.33 10.4 0.1 2.5 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein Helicase_RecD PF05127.9 gi|257373016|ref|YP_003175790.1| - 0.0043 16.7 0.0 0.99 9.0 0.0 2.3 2 0 0 2 2 2 1 Helicase AAA_18 PF13238.1 gi|257373016|ref|YP_003175790.1| - 0.0052 17.0 2.9 0.3 11.3 0.1 3.0 2 2 0 2 2 2 1 AAA domain PIF1 PF05970.9 gi|257373016|ref|YP_003175790.1| - 0.0061 15.5 0.0 0.6 8.9 0.0 2.2 2 0 0 2 2 2 1 PIF1-like helicase AAA PF00004.24 gi|257373016|ref|YP_003175790.1| - 0.0064 16.6 0.3 3.7 7.7 0.0 2.8 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) T2SE PF00437.15 gi|257373016|ref|YP_003175790.1| - 0.0069 15.3 0.1 1.1 8.0 0.0 2.3 2 0 0 2 2 2 1 Type II/IV secretion system protein Thymidylate_kin PF02223.12 gi|257373016|ref|YP_003175790.1| - 0.013 14.8 0.1 4.4 6.6 0.1 2.6 2 0 0 2 2 2 0 Thymidylate kinase ABC_tran PF00005.22 gi|257373016|ref|YP_003175790.1| - 0.016 15.5 0.0 3.5 7.9 0.0 2.5 2 0 0 2 2 2 0 ABC transporter AAA_5 PF07728.9 gi|257373016|ref|YP_003175790.1| - 0.026 14.2 0.1 2.1 8.0 0.0 2.9 2 2 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_33 PF13671.1 gi|257373016|ref|YP_003175790.1| - 0.1 12.4 0.0 12 5.8 0.0 2.4 2 0 0 2 2 2 0 AAA domain KTI12 PF08433.5 gi|257373016|ref|YP_003175790.1| - 0.1 11.7 0.1 2.7 7.1 0.0 2.8 3 0 0 3 3 3 0 Chromatin associated protein KTI12 Bac_GDH PF05088.7 gi|257373016|ref|YP_003175790.1| - 0.1 9.9 0.0 0.14 9.4 0.0 1.1 1 0 0 1 1 1 0 Bacterial NAD-glutamate dehydrogenase adh_short_C2 PF13561.1 gi|257373016|ref|YP_003175790.1| - 0.13 12.0 0.1 1 9.0 0.0 2.1 2 0 0 2 2 2 0 Enoyl-(Acyl carrier protein) reductase VirC1 PF07015.6 gi|257373016|ref|YP_003175790.1| - 0.13 11.3 1.4 20 4.1 0.0 3.1 3 0 0 3 3 3 0 VirC1 protein NACHT PF05729.7 gi|257373016|ref|YP_003175790.1| - 0.15 11.6 0.3 5.8 6.5 0.1 2.4 2 0 0 2 2 2 0 NACHT domain ArsD PF06953.6 gi|257373017|ref|YP_003175791.1| - 5.3e-29 100.8 0.0 5.7e-29 100.7 0.0 1.0 1 0 0 1 1 1 1 Arsenical resistance operon trans-acting repressor ArsD PWI PF01480.12 gi|257373017|ref|YP_003175791.1| - 0.14 12.3 0.2 0.22 11.6 0.1 1.3 1 0 0 1 1 1 0 PWI domain HTH_20 PF12840.2 gi|257373018|ref|YP_003175792.1| - 2.7e-13 49.5 0.3 1.9e-12 46.7 0.1 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|257373018|ref|YP_003175792.1| - 6.4e-11 41.7 0.1 1.2e-10 40.8 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|257373018|ref|YP_003175792.1| - 6.3e-06 25.7 0.0 9.8e-06 25.1 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|257373018|ref|YP_003175792.1| - 0.00028 21.1 0.1 0.0023 18.2 0.0 2.1 2 1 0 2 2 2 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|257373018|ref|YP_003175792.1| - 0.0014 18.2 0.0 0.0034 17.0 0.0 1.6 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|257373018|ref|YP_003175792.1| - 0.0015 18.1 0.1 0.0035 16.9 0.0 1.7 1 1 0 1 1 1 1 MarR family GntR PF00392.16 gi|257373018|ref|YP_003175792.1| - 0.0022 17.4 0.0 0.0035 16.7 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_34 PF13601.1 gi|257373018|ref|YP_003175792.1| - 0.0033 17.4 0.0 0.0053 16.7 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain PaaX PF07848.7 gi|257373018|ref|YP_003175792.1| - 0.011 15.7 0.0 0.017 15.0 0.0 1.3 1 0 0 1 1 1 0 PaaX-like protein DUF4423 PF14394.1 gi|257373018|ref|YP_003175792.1| - 0.02 14.4 0.0 0.034 13.7 0.0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4423) Penicillinase_R PF03965.11 gi|257373018|ref|YP_003175792.1| - 0.044 13.8 0.0 0.078 13.0 0.0 1.4 1 0 0 1 1 1 0 Penicillinase repressor RP-C PF03428.8 gi|257373018|ref|YP_003175792.1| - 0.047 13.1 0.1 0.097 12.1 0.0 1.5 2 0 0 2 2 2 0 Replication protein C N-terminal domain DUF2250 PF10007.4 gi|257373018|ref|YP_003175792.1| - 0.065 13.1 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_Crp_2 PF13545.1 gi|257373018|ref|YP_003175792.1| - 0.077 12.7 0.0 0.24 11.2 0.0 1.8 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain DUF2513 PF10711.4 gi|257373018|ref|YP_003175792.1| - 0.095 12.7 0.0 0.14 12.2 0.0 1.4 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) PAX PF00292.13 gi|257373018|ref|YP_003175792.1| - 0.1 12.3 0.0 0.15 11.8 0.0 1.2 1 0 0 1 1 1 0 'Paired box' domain Cdc6_C PF09079.6 gi|257373018|ref|YP_003175792.1| - 0.12 12.1 0.1 0.21 11.3 0.0 1.6 2 0 0 2 2 2 0 CDC6, C terminal Imm29 PF15575.1 gi|257373020|ref|YP_003175794.1| - 0.037 13.6 0.0 0.039 13.5 0.0 1.1 1 0 0 1 1 1 0 Immunity protein 29 Ribonuc_red_lgC PF02867.10 gi|257373021|ref|YP_003175795.1| - 1.2e-97 327.7 0.0 5e-36 124.3 0.1 3.0 1 1 2 3 3 3 3 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.16 gi|257373021|ref|YP_003175795.1| - 0.00079 19.1 0.0 0.0027 17.4 0.0 2.0 1 0 0 1 1 1 1 Ribonucleotide reductase, all-alpha domain PGBA_C PF15437.1 gi|257373021|ref|YP_003175795.1| - 0.2 11.7 2.2 2.8 8.1 0.0 3.0 3 0 0 3 3 3 0 Plasminogen-binding protein pgbA C-terminal Ribonuc_red_sm PF00268.16 gi|257373022|ref|YP_003175796.1| - 1e-12 47.6 7.5 1.1e-12 47.5 2.0 2.0 1 1 1 2 2 2 2 Ribonucleotide reductase, small chain Rubrerythrin PF02915.12 gi|257373022|ref|YP_003175796.1| - 0.01 16.1 1.0 1.7 8.9 0.3 2.5 2 0 0 2 2 2 0 Rubrerythrin DUF656 PF04920.7 gi|257373022|ref|YP_003175796.1| - 0.12 12.0 0.0 0.26 10.9 0.0 1.5 2 0 0 2 2 2 0 Family of unknown function (DUF656) ATP-cone PF03477.11 gi|257373023|ref|YP_003175797.1| - 1.2e-18 67.3 0.3 1.5e-18 66.9 0.2 1.2 1 0 0 1 1 1 1 ATP cone domain Zn_Tnp_IS1595 PF12760.2 gi|257373023|ref|YP_003175797.1| - 0.0017 18.1 1.4 0.0025 17.5 1.0 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain zf-C2H2_4 PF13894.1 gi|257373023|ref|YP_003175797.1| - 0.081 13.3 1.7 0.36 11.2 0.5 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger Lar_restr_allev PF14354.1 gi|257373023|ref|YP_003175797.1| - 0.14 12.4 0.5 0.23 11.7 0.4 1.4 1 0 0 1 1 1 0 Restriction alleviation protein Lar AzlD PF05437.7 gi|257373024|ref|YP_003175798.1| - 2e-17 62.9 9.1 2.2e-17 62.7 6.3 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport protein (AzlD) TauE PF01925.14 gi|257373024|ref|YP_003175798.1| - 0.032 13.6 8.0 0.012 15.0 3.9 1.4 1 1 0 1 1 1 0 Sulfite exporter TauE/SafE DUF4229 PF14012.1 gi|257373025|ref|YP_003175799.1| - 4.7 7.1 10.8 0.84 9.5 4.4 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF4229) Bys1 PF04681.7 gi|257373027|ref|YP_003175801.1| - 0.075 12.7 0.0 0.11 12.2 0.0 1.2 1 0 0 1 1 1 0 Blastomyces yeast-phase-specific protein SH2 PF00017.19 gi|257373031|ref|YP_003175805.1| - 0.086 12.6 0.0 0.22 11.3 0.0 1.7 1 1 0 1 1 1 0 SH2 domain EF-hand_6 PF13405.1 gi|257373032|ref|YP_003175806.1| - 0.025 14.4 5.9 8.3 6.5 0.1 4.6 4 0 0 4 4 4 0 EF-hand domain EF-hand_1 PF00036.27 gi|257373032|ref|YP_003175806.1| - 2.4 7.6 12.4 0.68 9.3 0.1 3.9 5 0 0 5 5 5 0 EF hand EF-hand_7 PF13499.1 gi|257373032|ref|YP_003175806.1| - 8.6 6.5 6.3 1.9 8.6 0.8 2.6 2 1 0 2 2 2 0 EF-hand domain pair Binary_toxB PF03495.9 gi|257373033|ref|YP_003175807.1| - 3 6.3 10.8 0.14 10.7 0.4 2.8 3 0 0 3 3 3 0 Clostridial binary toxin B/anthrax toxin PA HTH_20 PF12840.2 gi|257373035|ref|YP_003175809.1| - 4.6e-06 26.3 0.1 7.3e-06 25.6 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|257373035|ref|YP_003175809.1| - 0.0017 17.7 0.0 0.0026 17.1 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|257373035|ref|YP_003175809.1| - 0.0077 15.8 0.0 0.012 15.1 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|257373035|ref|YP_003175809.1| - 0.024 14.3 0.0 0.034 13.8 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|257373035|ref|YP_003175809.1| - 0.057 13.7 0.0 0.087 13.1 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain YesK PF14150.1 gi|257373036|ref|YP_003175810.1| - 0.14 12.2 5.7 0.17 12.0 0.8 2.3 1 1 1 2 2 2 0 YesK-like protein DoxX_2 PF13564.1 gi|257373036|ref|YP_003175810.1| - 0.15 12.0 5.9 0.093 12.7 1.7 2.1 1 1 1 2 2 2 0 DoxX-like family MerC PF03203.9 gi|257373036|ref|YP_003175810.1| - 0.18 12.1 5.0 0.38 11.1 3.4 1.7 1 1 0 1 1 1 0 MerC mercury resistance protein DUF3681 PF12442.3 gi|257373036|ref|YP_003175810.1| - 0.93 9.6 6.9 0.65 10.2 2.6 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3681) FA_desaturase PF00487.19 gi|257373036|ref|YP_003175810.1| - 1.4 8.3 5.1 1.6 8.0 3.6 1.1 1 0 0 1 1 1 0 Fatty acid desaturase SPC12 PF06645.8 gi|257373036|ref|YP_003175810.1| - 1.6 8.5 0.0 1.6 8.5 0.0 2.7 1 1 1 2 2 2 0 Microsomal signal peptidase 12 kDa subunit (SPC12) ABC2_membrane_3 PF12698.2 gi|257373036|ref|YP_003175810.1| - 2.2 7.2 8.4 2.5 7.0 5.8 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein DUF4013 PF13197.1 gi|257373037|ref|YP_003175811.1| - 1.2 8.4 12.8 1.5 8.1 8.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4013) VMA21 PF09446.5 gi|257373037|ref|YP_003175811.1| - 7.8 6.5 9.0 12 5.8 6.2 1.5 1 1 0 1 1 1 0 VMA21-like domain DUF4013 PF13197.1 gi|257373038|ref|YP_003175812.1| - 0.00063 19.1 23.1 0.00063 19.1 16.0 2.6 1 1 2 3 3 3 2 Protein of unknown function (DUF4013) FAD_binding_7 PF03441.9 gi|257373039|ref|YP_003175813.1| - 3.6e-77 259.2 0.0 4.6e-77 258.9 0.0 1.1 1 0 0 1 1 1 1 FAD binding domain of DNA photolyase DNA_photolyase PF00875.13 gi|257373039|ref|YP_003175813.1| - 1.6e-20 73.4 0.0 1.1e-19 70.7 0.0 2.0 2 0 0 2 2 2 1 DNA photolyase CCSMST1 PF15013.1 gi|257373040|ref|YP_003175814.1| - 0.11 12.3 0.1 0.12 12.3 0.0 1.1 1 0 0 1 1 1 0 CCSMST1 family Gram_pos_anchor PF00746.16 gi|257373040|ref|YP_003175814.1| - 0.21 11.4 1.5 0.22 11.3 0.0 1.7 2 0 0 2 2 2 0 Gram positive anchor HTH_10 PF04967.7 gi|257373041|ref|YP_003175815.1| - 3.2e-13 49.0 0.1 5.2e-13 48.3 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.11 gi|257373041|ref|YP_003175815.1| - 0.00016 20.8 1.1 0.00036 19.7 0.8 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_20 PF12840.2 gi|257373041|ref|YP_003175815.1| - 0.0024 17.6 1.0 0.0068 16.1 0.2 2.2 3 0 0 3 3 3 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|257373041|ref|YP_003175815.1| - 0.0072 15.7 1.6 0.16 11.4 1.1 2.4 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_30 PF13556.1 gi|257373041|ref|YP_003175815.1| - 0.028 13.9 0.1 0.068 12.7 0.0 1.6 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain MarR_2 PF12802.2 gi|257373041|ref|YP_003175815.1| - 0.039 13.6 2.3 0.29 10.8 1.1 2.6 2 1 0 2 2 2 0 MarR family HTH_IclR PF09339.5 gi|257373041|ref|YP_003175815.1| - 0.086 12.4 0.9 0.22 11.1 0.1 2.1 3 0 0 3 3 3 0 IclR helix-turn-helix domain COX1 PF00115.15 gi|257373042|ref|YP_003175816.1| - 3.6e-69 233.5 49.3 4.7e-69 233.1 33.4 1.7 1 1 1 2 2 2 1 Cytochrome C and Quinol oxidase polypeptide I COX2 PF00116.15 gi|257373043|ref|YP_003175817.1| - 5.1e-23 81.1 0.1 6.4e-23 80.8 0.1 1.2 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, periplasmic domain Cupredoxin_1 PF13473.1 gi|257373043|ref|YP_003175817.1| - 0.028 14.3 0.0 0.038 13.8 0.0 1.3 1 0 0 1 1 1 0 Cupredoxin-like domain CHB_HEX_C_1 PF13290.1 gi|257373043|ref|YP_003175817.1| - 0.045 13.5 0.2 0.096 12.4 0.0 1.7 2 0 0 2 2 2 0 Chitobiase/beta-hexosaminidase C-terminal domain PGG PF13962.1 gi|257373043|ref|YP_003175817.1| - 0.068 12.7 0.1 0.12 11.9 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function Viral_P18 PF04521.8 gi|257373043|ref|YP_003175817.1| - 0.085 12.3 0.0 0.12 11.8 0.0 1.2 1 0 0 1 1 1 0 ssRNA positive strand viral 18kD cysteine rich protein UCR_Fe-S_N PF10399.4 gi|257373043|ref|YP_003175817.1| - 2.2 7.4 4.7 5 6.3 3.3 1.5 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal E1-E2_ATPase PF00122.15 gi|257373045|ref|YP_003175819.1| - 4.7e-39 133.7 4.0 8.7e-39 132.9 2.8 1.4 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.21 gi|257373045|ref|YP_003175819.1| - 9.2e-32 111.1 5.6 9.2e-32 111.1 3.9 1.8 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|257373045|ref|YP_003175819.1| - 1.8e-11 44.5 0.6 6.1e-11 42.8 0.4 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|257373045|ref|YP_003175819.1| - 5.2e-08 32.9 0.0 4.4e-07 29.9 0.0 2.7 3 0 0 3 3 3 1 Heavy-metal-associated domain ATPase-cat_bd PF12156.3 gi|257373045|ref|YP_003175819.1| - 0.00012 22.5 0.1 0.00024 21.5 0.1 1.5 1 0 0 1 1 1 1 Putative metal-binding domain of cation transport ATPase Hydrolase_3 PF08282.7 gi|257373045|ref|YP_003175819.1| - 0.003 17.1 0.2 0.005 16.4 0.2 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase DsbD_2 PF13386.1 gi|257373046|ref|YP_003175820.1| - 7.4e-47 159.6 16.8 8.9e-47 159.4 11.7 1.0 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region DsbD PF02683.10 gi|257373046|ref|YP_003175820.1| - 0.0047 16.5 4.8 0.023 14.3 3.3 2.1 1 1 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region MCPsignal PF00015.16 gi|257373048|ref|YP_003175822.1| - 7e-54 182.6 50.9 1.2e-50 172.0 23.5 2.7 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain Protoglobin PF11563.3 gi|257373048|ref|YP_003175822.1| - 5.7e-31 107.3 4.7 6.1e-31 107.2 0.6 2.9 3 1 0 3 3 1 1 Protoglobin Laminin_II PF06009.7 gi|257373048|ref|YP_003175822.1| - 0.0008 19.1 28.0 0.034 13.9 2.2 4.4 2 2 1 4 4 4 3 Laminin Domain II DUF948 PF06103.6 gi|257373048|ref|YP_003175822.1| - 0.00095 18.9 24.7 0.16 11.8 1.4 5.4 2 2 3 5 5 5 2 Bacterial protein of unknown function (DUF948) DUF4047 PF13256.1 gi|257373048|ref|YP_003175822.1| - 0.0026 17.7 2.4 0.0026 17.7 1.7 2.8 2 1 0 2 2 2 1 Domain of unknown function (DUF4047) Sec8_exocyst PF04048.9 gi|257373048|ref|YP_003175822.1| - 0.011 15.3 11.0 0.17 11.5 0.1 4.1 3 1 1 4 4 4 0 Sec8 exocyst complex component specific domain IMD PF08397.6 gi|257373048|ref|YP_003175822.1| - 0.017 14.4 0.4 0.017 14.4 0.3 2.5 2 1 1 3 3 3 0 IRSp53/MIM homology domain BLOC1_2 PF10046.4 gi|257373048|ref|YP_003175822.1| - 0.021 14.9 22.3 0.56 10.3 0.3 5.3 2 2 1 4 4 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 IncA PF04156.9 gi|257373048|ref|YP_003175822.1| - 0.13 11.8 26.1 1.2 8.6 3.9 3.6 2 1 0 3 3 3 0 IncA protein TMP_2 PF06791.8 gi|257373048|ref|YP_003175822.1| - 0.15 11.6 25.8 0.27 10.8 6.3 3.2 1 1 2 3 3 3 0 Prophage tail length tape measure protein IFT57 PF10498.4 gi|257373048|ref|YP_003175822.1| - 0.17 10.6 17.3 1.5 7.4 6.0 2.5 1 1 1 2 2 2 0 Intra-flagellar transport protein 57 Sec5 PF15469.1 gi|257373048|ref|YP_003175822.1| - 0.47 10.1 4.0 0.64 9.7 0.4 2.9 2 1 1 3 3 2 0 Exocyst complex component Sec5 Tweety PF04906.8 gi|257373048|ref|YP_003175822.1| - 0.48 8.7 15.2 1.4 7.2 0.6 3.9 3 1 1 4 4 4 0 Tweety Herpes_U30 PF04523.8 gi|257373048|ref|YP_003175822.1| - 0.58 7.5 8.9 0.086 10.2 0.7 2.2 1 1 0 2 2 2 0 Herpes virus tegument protein U30 Spc7 PF08317.6 gi|257373048|ref|YP_003175822.1| - 0.74 8.4 20.5 0.091 11.4 1.8 3.4 2 1 2 4 4 4 0 Spc7 kinetochore protein DASH_Duo1 PF08651.5 gi|257373048|ref|YP_003175822.1| - 0.9 9.1 6.7 3.1 7.4 0.0 4.2 3 2 2 5 5 5 0 DASH complex subunit Duo1 Cortex-I_coil PF09304.5 gi|257373048|ref|YP_003175822.1| - 1.6 8.8 17.8 7.3 6.6 0.5 4.4 1 1 2 4 4 4 0 Cortexillin I, coiled coil STAT_alpha PF01017.15 gi|257373048|ref|YP_003175822.1| - 1.6 8.3 6.3 7 6.3 0.0 3.4 2 1 1 4 4 4 0 STAT protein, all-alpha domain DUF2130 PF09903.4 gi|257373048|ref|YP_003175822.1| - 2.3 6.8 9.4 5.1 5.7 0.2 3.5 3 2 1 4 4 4 0 Uncharacterized protein conserved in bacteria (DUF2130) LXG PF04740.7 gi|257373048|ref|YP_003175822.1| - 2.8 7.6 28.3 0.22 11.2 0.8 4.7 2 1 1 4 4 4 0 LXG domain of WXG superfamily DUF869 PF05911.6 gi|257373048|ref|YP_003175822.1| - 4 5.5 30.1 4.5 5.3 19.5 2.0 2 1 0 2 2 2 0 Plant protein of unknown function (DUF869) TPR_20 PF14561.1 gi|257373048|ref|YP_003175822.1| - 4.2 7.5 8.9 1.1 9.3 0.5 3.1 2 1 0 2 2 2 0 Tetratricopeptide repeat Bacillus_HBL PF05791.6 gi|257373048|ref|YP_003175822.1| - 5.6 6.2 7.5 2.2 7.6 0.3 3.2 3 1 0 3 3 3 0 Bacillus haemolytic enterotoxin (HBL) PhageMin_Tail PF10145.4 gi|257373048|ref|YP_003175822.1| - 8.7 5.9 19.9 0.83 9.2 3.6 3.0 1 1 1 2 2 2 0 Phage-related minor tail protein ISG65-75 PF11727.3 gi|257373048|ref|YP_003175822.1| - 9 5.2 27.9 6 5.8 4.5 3.4 1 1 3 4 4 4 0 Invariant surface glycoprotein Baculo_PEP_C PF04513.7 gi|257373048|ref|YP_003175822.1| - 9.3 6.0 18.2 6.4 6.6 1.7 4.0 1 1 2 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus ELFV_dehydrog PF00208.16 gi|257373049|ref|YP_003175823.1| - 5.1e-69 232.5 0.0 6.4e-69 232.2 0.0 1.1 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.13 gi|257373049|ref|YP_003175823.1| - 6.1e-51 171.4 0.0 9.7e-51 170.7 0.0 1.3 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.14 gi|257373049|ref|YP_003175823.1| - 0.00072 18.7 0.0 0.0013 17.9 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Bac_GDH PF05088.7 gi|257373049|ref|YP_003175823.1| - 0.11 9.8 0.0 0.2 8.9 0.0 1.3 1 0 0 1 1 1 0 Bacterial NAD-glutamate dehydrogenase IlvN PF07991.7 gi|257373049|ref|YP_003175823.1| - 0.12 11.7 0.0 0.23 10.8 0.0 1.5 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain Zn-ribbon_8 PF09723.5 gi|257373050|ref|YP_003175824.1| - 0.001 18.9 5.3 0.0045 16.9 3.2 2.0 1 1 1 2 2 2 1 Zinc ribbon domain DZR PF12773.2 gi|257373050|ref|YP_003175824.1| - 0.0017 18.1 1.0 0.0018 18.0 0.7 1.2 1 0 0 1 1 1 1 Double zinc ribbon DUF1272 PF06906.6 gi|257373050|ref|YP_003175824.1| - 0.0024 17.6 1.2 0.0025 17.5 0.8 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1272) zf-C2HC5 PF06221.8 gi|257373050|ref|YP_003175824.1| - 0.0024 17.5 0.2 0.0028 17.3 0.1 1.1 1 0 0 1 1 1 1 Putative zinc finger motif, C2HC5-type HypA PF01155.14 gi|257373050|ref|YP_003175824.1| - 0.0052 16.4 0.9 0.0054 16.3 0.6 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family OrfB_Zn_ribbon PF07282.6 gi|257373050|ref|YP_003175824.1| - 0.009 15.6 0.5 0.011 15.3 0.3 1.1 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zf-RING_3 PF14369.1 gi|257373050|ref|YP_003175824.1| - 0.013 15.4 2.9 0.025 14.5 1.6 1.7 1 1 1 2 2 2 0 zinc-finger DNA_RNApol_7kD PF03604.8 gi|257373050|ref|YP_003175824.1| - 0.015 14.7 1.4 0.022 14.1 1.0 1.3 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Auto_anti-p27 PF06677.7 gi|257373050|ref|YP_003175824.1| - 0.024 14.3 2.5 0.03 14.1 1.7 1.1 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Prok-RING_1 PF14446.1 gi|257373050|ref|YP_003175824.1| - 0.033 13.9 1.7 0.039 13.6 1.2 1.1 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zinc_ribbon_2 PF13240.1 gi|257373050|ref|YP_003175824.1| - 0.033 13.6 3.5 0.086 12.3 2.4 1.7 1 1 1 2 2 2 0 zinc-ribbon domain Nudix_N_2 PF14803.1 gi|257373050|ref|YP_003175824.1| - 0.039 13.6 1.3 1.8 8.3 0.1 2.2 2 0 0 2 2 2 0 Nudix N-terminal zf-IS66 PF13005.2 gi|257373050|ref|YP_003175824.1| - 0.043 13.8 1.5 0.15 12.0 0.1 2.1 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Prim_Zn_Ribbon PF08273.7 gi|257373050|ref|YP_003175824.1| - 0.044 13.8 0.5 0.044 13.8 0.4 2.0 1 1 1 2 2 2 0 Zinc-binding domain of primase-helicase zf-C4_Topoisom PF01396.14 gi|257373050|ref|YP_003175824.1| - 0.044 13.2 0.8 0.085 12.3 0.1 1.7 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger COX5B PF01215.14 gi|257373050|ref|YP_003175824.1| - 0.057 13.0 0.9 0.69 9.5 0.0 2.0 1 1 1 2 2 2 0 Cytochrome c oxidase subunit Vb DNA_ligase_ZBD PF03119.11 gi|257373050|ref|YP_003175824.1| - 0.057 13.1 1.0 0.34 10.6 0.1 2.2 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Zn_Tnp_IS1595 PF12760.2 gi|257373050|ref|YP_003175824.1| - 0.058 13.2 0.4 1.3 8.8 0.0 2.0 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|257373050|ref|YP_003175824.1| - 0.17 11.1 4.1 7.8 5.8 2.9 2.1 1 1 0 1 1 1 0 zinc-ribbon domain zf-HYPF PF07503.7 gi|257373050|ref|YP_003175824.1| - 0.18 11.2 1.8 0.42 10.0 0.1 2.0 2 0 0 2 2 2 0 HypF finger UPF0547 PF10571.4 gi|257373050|ref|YP_003175824.1| - 0.26 11.0 3.1 0.69 9.6 0.1 2.1 1 1 1 2 2 2 0 Uncharacterised protein family UPF0547 XPA_N PF01286.13 gi|257373050|ref|YP_003175824.1| - 0.39 10.4 2.0 3.4 7.4 0.1 2.1 2 0 0 2 2 2 0 XPA protein N-terminal TFIIS_C PF01096.13 gi|257373050|ref|YP_003175824.1| - 0.42 10.2 2.3 14 5.4 0.1 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-tcix PF14952.1 gi|257373050|ref|YP_003175824.1| - 0.75 9.1 2.7 5 6.5 0.3 2.1 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding YhfH PF14149.1 gi|257373050|ref|YP_003175824.1| - 0.89 9.3 4.4 3 7.7 0.5 2.1 1 1 1 2 2 2 0 YhfH-like protein zf-H2C2_2 PF13465.1 gi|257373050|ref|YP_003175824.1| - 3.7 8.0 6.9 4.8 7.6 0.6 2.1 1 1 1 2 2 2 0 Zinc-finger double domain TF_Zn_Ribbon PF08271.7 gi|257373050|ref|YP_003175824.1| - 6.5 6.1 8.0 3.5 7.0 0.5 2.3 1 1 1 2 2 2 0 TFIIB zinc-binding GAF_2 PF13185.1 gi|257373051|ref|YP_003175825.1| - 5.7e-24 85.2 12.5 2.4e-16 60.5 0.2 3.6 4 0 0 4 4 4 2 GAF domain GAF_3 PF13492.1 gi|257373051|ref|YP_003175825.1| - 3.1e-18 66.1 2.6 3.6e-11 43.2 0.1 3.5 3 0 0 3 3 3 2 GAF domain HTH_10 PF04967.7 gi|257373051|ref|YP_003175825.1| - 9.2e-18 63.5 0.0 6.6e-17 60.8 0.0 2.3 2 0 0 2 2 2 1 HTH DNA binding domain PAS_9 PF13426.1 gi|257373051|ref|YP_003175825.1| - 7.4e-16 58.4 0.1 2e-06 28.1 0.0 2.9 2 0 0 2 2 2 2 PAS domain PAS_4 PF08448.5 gi|257373051|ref|YP_003175825.1| - 2.7e-15 56.3 7.9 8.1e-10 38.7 0.4 4.3 4 1 0 4 4 4 2 PAS fold Response_reg PF00072.19 gi|257373051|ref|YP_003175825.1| - 4.6e-10 39.4 0.3 1.7e-09 37.7 0.1 2.0 2 0 0 2 2 2 1 Response regulator receiver domain PAS_7 PF12860.2 gi|257373051|ref|YP_003175825.1| - 1e-06 28.7 1.5 0.02 14.9 0.0 4.0 3 1 0 3 3 3 2 PAS fold PAS PF00989.19 gi|257373051|ref|YP_003175825.1| - 1.3e-06 28.1 0.2 0.0046 16.7 0.0 3.1 3 0 0 3 3 3 2 PAS fold GAF PF01590.21 gi|257373051|ref|YP_003175825.1| - 5.6e-06 26.5 4.0 0.00087 19.4 0.6 3.3 2 1 0 2 2 2 1 GAF domain PAS_8 PF13188.1 gi|257373051|ref|YP_003175825.1| - 7.3e-06 25.6 0.0 0.13 12.1 0.0 3.2 2 0 0 2 2 2 2 PAS domain MCM2_N PF12619.3 gi|257373051|ref|YP_003175825.1| - 1.2 9.1 15.3 3.8 7.4 0.0 3.1 3 0 0 3 3 3 0 Mini-chromosome maintenance protein 2 Peripla_BP_2 PF01497.13 gi|257373052|ref|YP_003175826.1| - 1.4e-19 70.1 0.0 1.9e-19 69.7 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein DrsE_2 PF13686.1 gi|257373053|ref|YP_003175827.1| - 8.6e-53 178.1 0.3 1e-52 177.8 0.2 1.1 1 0 0 1 1 1 1 DsrE/DsrF/DrsH-like family DrsE PF02635.10 gi|257373053|ref|YP_003175827.1| - 1.9e-06 27.9 0.0 2.3e-05 24.4 0.0 2.1 1 1 0 1 1 1 1 DsrE/DsrF-like family Packaging_FI PF14000.1 gi|257373053|ref|YP_003175827.1| - 0.00011 22.3 0.0 0.00025 21.2 0.0 1.5 1 0 0 1 1 1 1 DNA packaging protein FI Prenyltrans PF00432.16 gi|257373053|ref|YP_003175827.1| - 0.062 12.8 0.1 0.12 11.9 0.0 1.5 1 0 0 1 1 1 0 Prenyltransferase and squalene oxidase repeat TusA PF01206.12 gi|257373054|ref|YP_003175828.1| - 2.7e-20 71.7 0.0 3e-20 71.5 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.4 gi|257373054|ref|YP_003175828.1| - 0.078 12.5 0.0 0.27 10.8 0.0 1.7 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2249) Lactamase_B PF00753.22 gi|257373055|ref|YP_003175829.1| - 2.8e-18 66.2 4.5 4.5e-18 65.5 3.1 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Rhodanese PF00581.15 gi|257373055|ref|YP_003175829.1| - 3e-11 43.6 0.0 6.4e-11 42.5 0.0 1.5 1 0 0 1 1 1 1 Rhodanese-like domain Lactamase_B_2 PF12706.2 gi|257373055|ref|YP_003175829.1| - 0.0014 18.2 0.0 0.0025 17.4 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain DUF4341 PF14241.1 gi|257373056|ref|YP_003175830.1| - 1.8e-15 56.3 7.8 1.7e-13 50.0 2.9 2.7 2 0 0 2 2 2 2 Domain of unknown function (DUF4341) Sulf_transp PF04143.9 gi|257373056|ref|YP_003175830.1| - 3.3e-11 43.0 6.8 3.3e-11 43.0 4.7 3.4 3 0 0 3 3 3 2 Sulphur transport Neurensin PF14927.1 gi|257373056|ref|YP_003175830.1| - 0.15 11.4 1.0 0.36 10.2 0.7 1.7 1 0 0 1 1 1 0 Neurensin Sulf_transp PF04143.9 gi|257373057|ref|YP_003175831.1| - 1.6e-09 37.6 9.7 1.6e-09 37.6 6.7 2.5 3 0 0 3 3 3 2 Sulphur transport Polysacc_synt_3 PF13440.1 gi|257373057|ref|YP_003175831.1| - 0.15 11.4 5.1 0.49 9.8 3.5 1.7 1 1 0 1 1 1 0 Polysaccharide biosynthesis protein Pneumo_att_G PF05539.6 gi|257373057|ref|YP_003175831.1| - 0.75 9.1 10.0 1 8.6 6.9 1.1 1 0 0 1 1 1 0 Pneumovirinae attachment membrane glycoprotein G DUF204 PF02659.10 gi|257373057|ref|YP_003175831.1| - 2 8.6 8.2 0.18 11.9 0.9 2.4 2 1 0 2 2 2 0 Domain of unknown function DUF PHO4 PF01384.15 gi|257373058|ref|YP_003175832.1| - 3.7e-41 140.8 32.0 3.7e-41 140.8 22.2 1.6 1 1 0 1 1 1 1 Phosphate transporter family TrmB PF01978.14 gi|257373059|ref|YP_003175833.1| - 1.2e-17 63.3 0.0 1.6e-17 62.9 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|257373059|ref|YP_003175833.1| - 1.1e-06 28.2 0.1 2.3e-06 27.2 0.0 1.6 2 0 0 2 2 1 1 MarR family HTH_20 PF12840.2 gi|257373059|ref|YP_003175833.1| - 3.2e-06 26.8 0.0 5.5e-06 26.0 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|257373059|ref|YP_003175833.1| - 4.3e-06 26.2 0.0 7.7e-06 25.3 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|257373059|ref|YP_003175833.1| - 5.3e-06 26.0 0.1 8.1e-06 25.4 0.0 1.3 1 0 0 1 1 1 1 MarR family Penicillinase_R PF03965.11 gi|257373059|ref|YP_003175833.1| - 7.8e-06 25.9 0.0 9.6e-06 25.6 0.0 1.1 1 0 0 1 1 1 1 Penicillinase repressor HTH_11 PF08279.7 gi|257373059|ref|YP_003175833.1| - 0.0002 20.9 0.0 0.0003 20.3 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.1 gi|257373059|ref|YP_003175833.1| - 0.00024 20.4 0.0 0.00035 19.8 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_38 PF13936.1 gi|257373059|ref|YP_003175833.1| - 0.00052 19.5 0.0 0.00089 18.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain RuvB_C PF05491.8 gi|257373059|ref|YP_003175833.1| - 0.0012 18.4 0.0 0.002 17.7 0.0 1.3 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB C-terminus HTH_27 PF13463.1 gi|257373059|ref|YP_003175833.1| - 0.0018 18.5 0.0 0.0026 18.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_23 PF13384.1 gi|257373059|ref|YP_003175833.1| - 0.002 17.7 0.0 0.0034 16.9 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain PadR PF03551.9 gi|257373059|ref|YP_003175833.1| - 0.012 15.3 0.2 0.028 14.2 0.1 1.6 1 1 0 1 1 1 0 Transcriptional regulator PadR-like family GntR PF00392.16 gi|257373059|ref|YP_003175833.1| - 0.013 14.9 0.2 0.023 14.0 0.1 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family UMPH-1 PF05822.7 gi|257373059|ref|YP_003175833.1| - 0.021 14.1 0.0 0.024 13.9 0.0 1.3 1 0 0 1 1 1 0 Pyrimidine 5'-nucleotidase (UMPH-1) HTH_Crp_2 PF13545.1 gi|257373059|ref|YP_003175833.1| - 0.022 14.5 0.1 0.044 13.5 0.0 1.6 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_29 PF13551.1 gi|257373059|ref|YP_003175833.1| - 0.052 13.7 0.0 0.077 13.1 0.0 1.3 1 1 0 1 1 1 0 Winged helix-turn helix Rrf2 PF02082.15 gi|257373059|ref|YP_003175833.1| - 0.056 13.5 0.0 0.087 12.9 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator 2OG-Fe_Oxy_2 PF10014.4 gi|257373059|ref|YP_003175833.1| - 0.063 12.6 0.1 0.073 12.4 0.0 1.3 1 0 0 1 1 1 0 2OG-Fe dioxygenase DUF4423 PF14394.1 gi|257373059|ref|YP_003175833.1| - 0.11 12.0 0.0 0.16 11.5 0.0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_CodY PF08222.6 gi|257373059|ref|YP_003175833.1| - 0.16 11.3 0.0 0.29 10.5 0.0 1.4 1 0 0 1 1 1 0 CodY helix-turn-helix domain Thioredoxin PF00085.15 gi|257373060|ref|YP_003175834.1| - 3.7e-27 94.0 0.0 4.1e-27 93.8 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|257373060|ref|YP_003175834.1| - 8.2e-11 42.1 0.1 6.9e-10 39.1 0.1 2.0 1 1 0 1 1 1 1 Thioredoxin-like domain DSBA PF01323.15 gi|257373060|ref|YP_003175834.1| - 1.5e-06 27.8 0.2 1.5e-06 27.8 0.1 1.6 2 1 0 2 2 2 1 DSBA-like thioredoxin domain Thioredoxin_7 PF13899.1 gi|257373060|ref|YP_003175834.1| - 3.2e-06 27.0 0.0 4.5e-06 26.5 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_8 PF13905.1 gi|257373060|ref|YP_003175834.1| - 3.8e-06 26.9 0.0 0.017 15.2 0.0 2.2 1 1 1 2 2 2 2 Thioredoxin-like Thioredoxin_3 PF13192.1 gi|257373060|ref|YP_003175834.1| - 4.4e-06 26.4 0.1 8e-06 25.5 0.1 1.5 1 1 1 2 2 2 1 Thioredoxin domain Thioredoxin_9 PF14595.1 gi|257373060|ref|YP_003175834.1| - 9.6e-05 21.9 0.0 0.00012 21.5 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin HyaE PF07449.6 gi|257373060|ref|YP_003175834.1| - 0.00021 21.1 0.1 0.00042 20.1 0.0 1.5 1 1 1 2 2 2 1 Hydrogenase-1 expression protein HyaE TraF PF13728.1 gi|257373060|ref|YP_003175834.1| - 0.00029 20.3 0.0 0.00035 20.1 0.0 1.2 1 0 0 1 1 1 1 F plasmid transfer operon protein DUF836 PF05768.9 gi|257373060|ref|YP_003175834.1| - 0.0007 19.8 0.0 0.00091 19.4 0.0 1.3 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Thioredoxin_5 PF13743.1 gi|257373060|ref|YP_003175834.1| - 0.0065 16.0 0.0 0.0093 15.5 0.0 1.3 1 1 0 1 1 1 1 Thioredoxin Glutaredoxin PF00462.19 gi|257373060|ref|YP_003175834.1| - 0.015 15.2 0.0 0.03 14.2 0.0 1.5 1 0 0 1 1 1 0 Glutaredoxin AhpC-TSA PF00578.16 gi|257373060|ref|YP_003175834.1| - 0.017 14.7 0.1 3.5 7.3 0.1 2.1 1 1 1 2 2 2 0 AhpC/TSA family Thioredoxin_4 PF13462.1 gi|257373060|ref|YP_003175834.1| - 0.024 14.6 0.0 0.045 13.7 0.0 1.3 1 1 0 1 1 1 0 Thioredoxin Redoxin PF08534.5 gi|257373060|ref|YP_003175834.1| - 0.028 13.9 0.1 0.49 9.9 0.1 2.0 1 1 0 1 1 1 0 Redoxin TrbC_Ftype PF09673.5 gi|257373060|ref|YP_003175834.1| - 0.13 11.8 0.0 0.17 11.5 0.0 1.2 1 0 0 1 1 1 0 Type-F conjugative transfer system pilin assembly protein P5CR_dimer PF14748.1 gi|257373061|ref|YP_003175835.1| - 1.1e-36 125.1 0.2 2.3e-36 124.0 0.1 1.6 1 0 0 1 1 1 1 Pyrroline-5-carboxylate reductase dimerisation F420_oxidored PF03807.12 gi|257373061|ref|YP_003175835.1| - 2.4e-16 59.9 2.4 2.4e-16 59.9 0.2 2.1 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|257373061|ref|YP_003175835.1| - 3.9e-07 30.0 0.1 1.1e-06 28.6 0.0 1.7 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase PDH PF02153.12 gi|257373061|ref|YP_003175835.1| - 4.4e-05 22.4 0.3 0.0014 17.5 0.2 2.1 2 0 0 2 2 2 1 Prephenate dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|257373061|ref|YP_003175835.1| - 8.2e-05 22.3 1.3 0.0064 16.2 0.9 2.5 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.13 gi|257373061|ref|YP_003175835.1| - 0.00013 21.6 0.7 0.00024 20.8 0.1 1.8 2 0 0 2 2 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|257373061|ref|YP_003175835.1| - 0.00015 21.7 0.4 0.00062 19.7 0.1 2.3 1 1 1 2 2 2 1 TrkA-N domain Saccharop_dh PF03435.13 gi|257373061|ref|YP_003175835.1| - 0.0011 18.0 0.1 0.0018 17.3 0.1 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase ThiF PF00899.16 gi|257373061|ref|YP_003175835.1| - 0.004 16.9 1.2 0.0082 15.9 0.8 1.8 1 1 0 1 1 1 1 ThiF family Methyltransf_11 PF08241.7 gi|257373061|ref|YP_003175835.1| - 0.004 17.6 0.1 0.011 16.2 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain ApbA PF02558.11 gi|257373061|ref|YP_003175835.1| - 0.0055 16.1 0.6 0.021 14.2 0.4 1.9 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA UDPG_MGDP_dh_N PF03721.9 gi|257373061|ref|YP_003175835.1| - 0.037 13.4 0.2 0.095 12.0 0.1 1.7 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_7 PF13241.1 gi|257373061|ref|YP_003175835.1| - 0.039 14.1 0.5 0.086 13.1 0.1 1.8 2 0 0 2 2 2 0 Putative NAD(P)-binding IlvN PF07991.7 gi|257373061|ref|YP_003175835.1| - 0.047 13.0 0.1 0.066 12.5 0.1 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain 2-Hacid_dh_C PF02826.14 gi|257373061|ref|YP_003175835.1| - 0.049 12.7 0.1 0.08 12.0 0.1 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Methyltransf_18 PF12847.2 gi|257373061|ref|YP_003175835.1| - 0.049 14.2 1.4 0.15 12.6 0.8 2.2 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_25 PF13649.1 gi|257373061|ref|YP_003175835.1| - 0.087 13.1 0.0 0.68 10.3 0.0 2.2 2 1 0 2 2 2 0 Methyltransferase domain Shikimate_DH PF01488.15 gi|257373061|ref|YP_003175835.1| - 0.1 12.7 0.1 0.22 11.6 0.0 1.7 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Rossmann-like PF10727.4 gi|257373061|ref|YP_003175835.1| - 0.19 11.4 1.8 0.88 9.3 0.4 2.3 2 0 0 2 2 2 0 Rossmann-like domain GFO_IDH_MocA PF01408.17 gi|257373061|ref|YP_003175835.1| - 0.2 12.1 1.3 2.1 8.8 0.0 2.8 2 1 1 3 3 3 0 Oxidoreductase family, NAD-binding Rossmann fold Methyltransf_26 PF13659.1 gi|257373061|ref|YP_003175835.1| - 0.23 11.4 1.3 0.37 10.8 0.9 1.8 1 1 0 1 1 1 0 Methyltransferase domain adh_short PF00106.20 gi|257373061|ref|YP_003175835.1| - 0.46 10.3 5.1 0.15 11.9 1.5 1.7 2 0 0 2 2 2 0 short chain dehydrogenase CoA_binding PF02629.14 gi|257373061|ref|YP_003175835.1| - 0.88 10.1 3.7 2.7 8.5 0.6 2.9 2 1 1 3 3 3 0 CoA binding domain DUF2580 PF10824.3 gi|257373061|ref|YP_003175835.1| - 4.8 7.6 8.2 1.7 9.0 0.4 3.2 3 1 0 3 3 3 0 Protein of unknown function (DUF2580) YbaB_DNA_bd PF02575.11 gi|257373061|ref|YP_003175835.1| - 5.4 6.9 9.6 0.74 9.7 0.1 3.5 4 1 1 5 5 5 0 YbaB/EbfC DNA-binding family AA_kinase PF00696.23 gi|257373062|ref|YP_003175836.1| - 9.5e-39 133.3 2.7 1.1e-38 133.1 1.9 1.1 1 0 0 1 1 1 1 Amino acid kinase family Tol_Tol_Ttg2 PF05494.7 gi|257373062|ref|YP_003175836.1| - 0.082 12.4 0.3 0.14 11.7 0.2 1.4 1 0 0 1 1 1 0 Toluene tolerance, Ttg2 Aldedh PF00171.17 gi|257373063|ref|YP_003175837.1| - 2.8e-25 88.6 3.9 1.6e-21 76.1 0.6 2.2 2 0 0 2 2 2 2 Aldehyde dehydrogenase family Pex26 PF07163.7 gi|257373063|ref|YP_003175837.1| - 0.026 13.4 0.5 0.042 12.7 0.4 1.2 1 0 0 1 1 1 0 Pex26 protein DUF3080 PF11279.3 gi|257373063|ref|YP_003175837.1| - 0.14 11.2 0.2 0.36 9.9 0.3 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3080) SBP_bac_8 PF13416.1 gi|257373064|ref|YP_003175838.1| - 2.4e-17 63.5 0.5 3e-17 63.2 0.4 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|257373064|ref|YP_003175838.1| - 1.1e-16 60.9 0.0 2.2e-16 59.9 0.0 1.4 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|257373064|ref|YP_003175838.1| - 5.7e-13 49.2 2.5 1.4e-12 47.9 1.6 1.8 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|257373064|ref|YP_003175838.1| - 3.5e-12 46.4 0.0 6e-12 45.6 0.0 1.4 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein UCR_Fe-S_N PF10399.4 gi|257373064|ref|YP_003175838.1| - 0.019 14.1 1.9 0.04 13.0 1.3 1.5 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal TAT_signal PF10518.4 gi|257373064|ref|YP_003175838.1| - 0.21 11.6 4.1 0.51 10.4 2.9 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_1 PF00528.17 gi|257373065|ref|YP_003175839.1| - 1.9e-13 50.3 18.1 1.9e-13 50.3 12.5 1.7 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component T6SS_Vgr PF13296.1 gi|257373065|ref|YP_003175839.1| - 0.15 11.9 0.0 0.27 11.1 0.0 1.4 1 0 0 1 1 1 0 Putative type VI secretion system Rhs element Vgr BPD_transp_1 PF00528.17 gi|257373066|ref|YP_003175840.1| - 2e-11 43.7 10.3 2e-11 43.7 7.1 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|257373067|ref|YP_003175841.1| - 3.4e-33 114.8 0.0 5.4e-33 114.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.5 gi|257373067|ref|YP_003175841.1| - 7.3e-10 38.7 0.9 2e-09 37.2 0.6 1.8 1 0 0 1 1 1 1 TOBE domain AAA_21 PF13304.1 gi|257373067|ref|YP_003175841.1| - 2.6e-08 34.1 0.0 0.00011 22.3 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|257373067|ref|YP_003175841.1| - 0.0077 15.3 0.0 0.053 12.5 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|257373067|ref|YP_003175841.1| - 0.01 15.9 1.0 0.04 14.0 0.7 2.0 1 1 0 1 1 1 0 AAA domain Rad17 PF03215.10 gi|257373067|ref|YP_003175841.1| - 0.012 14.3 0.0 0.016 13.9 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA PF00004.24 gi|257373067|ref|YP_003175841.1| - 0.024 14.8 1.2 0.14 12.4 0.8 2.4 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SMC_N PF02463.14 gi|257373067|ref|YP_003175841.1| - 0.028 13.6 0.2 0.35 10.0 0.2 2.1 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|257373067|ref|YP_003175841.1| - 0.033 14.1 1.6 0.083 12.8 1.1 1.9 1 1 0 1 1 1 0 AAA ATPase domain PRK PF00485.13 gi|257373067|ref|YP_003175841.1| - 0.036 13.6 0.0 0.058 12.9 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_14 PF13173.1 gi|257373067|ref|YP_003175841.1| - 0.059 13.2 0.0 0.14 12.0 0.0 1.7 1 0 0 1 1 1 0 AAA domain MobB PF03205.9 gi|257373067|ref|YP_003175841.1| - 0.061 13.0 0.1 0.12 12.0 0.1 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B NB-ARC PF00931.17 gi|257373067|ref|YP_003175841.1| - 0.072 11.9 0.1 0.11 11.3 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_17 PF13207.1 gi|257373067|ref|YP_003175841.1| - 0.077 13.8 1.2 0.13 13.0 0.1 1.9 2 1 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|257373067|ref|YP_003175841.1| - 0.14 11.3 0.0 0.26 10.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_33 PF13671.1 gi|257373067|ref|YP_003175841.1| - 0.17 11.7 0.3 0.29 11.0 0.2 1.7 1 1 0 1 1 1 0 AAA domain Usp PF00582.21 gi|257373069|ref|YP_003175843.1| - 6.9e-61 204.5 12.8 2.4e-30 105.5 3.6 2.0 2 0 0 2 2 2 2 Universal stress protein family GARS_N PF02844.10 gi|257373069|ref|YP_003175843.1| - 0.0023 18.3 0.1 0.33 11.4 0.0 2.4 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, N domain DXP_reductoisom PF02670.11 gi|257373069|ref|YP_003175843.1| - 0.0084 16.6 0.3 5.2 7.6 0.0 2.3 2 1 0 2 2 2 2 1-deoxy-D-xylulose 5-phosphate reductoisomerase Lactamase_B_4 PF13691.1 gi|257373069|ref|YP_003175843.1| - 0.012 15.0 0.0 2.4 7.7 0.0 2.6 3 0 0 3 3 3 0 tRNase Z endonuclease CbiJ PF02571.9 gi|257373069|ref|YP_003175843.1| - 0.1 11.9 0.8 0.37 10.0 0.0 2.2 3 0 0 3 3 3 0 Precorrin-6x reductase CbiJ/CobK Pyridox_ox_2 PF12900.2 gi|257373070|ref|YP_003175844.1| - 1.9e-20 73.1 0.0 2.2e-20 72.9 0.0 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_oxidase PF01243.15 gi|257373070|ref|YP_003175844.1| - 0.00034 20.5 0.0 0.00044 20.2 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Usp PF00582.21 gi|257373071|ref|YP_003175845.1| - 1.6e-55 187.1 6.4 3.5e-27 95.2 1.5 2.1 2 0 0 2 2 2 2 Universal stress protein family DUF457 PF04307.9 gi|257373072|ref|YP_003175846.1| - 1.3e-07 31.1 14.0 2.7e-07 30.0 9.6 1.6 1 1 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) TCRP1 PF14944.1 gi|257373072|ref|YP_003175846.1| - 0.11 12.4 5.8 0.69 9.8 0.2 2.1 2 0 0 2 2 2 0 Tongue Cancer Chemotherapy Resistant Protein 1 Usp PF00582.21 gi|257373073|ref|YP_003175847.1| - 1.9e-31 109.1 2.3 2.2e-31 108.9 1.6 1.0 1 0 0 1 1 1 1 Universal stress protein family Transgly_assoc PF04226.8 gi|257373074|ref|YP_003175848.1| - 0.11 12.5 1.3 14 5.8 0.0 3.4 3 0 0 3 3 3 0 Transglycosylase associated protein DUF1656 PF07869.7 gi|257373074|ref|YP_003175848.1| - 0.18 11.6 2.2 0.25 11.1 0.0 2.4 3 0 0 3 3 3 0 Protein of unknown function (DUF1656) DUF2530 PF10745.4 gi|257373074|ref|YP_003175848.1| - 0.96 9.4 4.9 2.4 8.1 0.2 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF2530) TM_helix PF05552.7 gi|257373074|ref|YP_003175848.1| - 2.1 8.0 4.6 9.5 5.9 0.1 2.9 3 0 0 3 3 3 0 Conserved TM helix IclR PF01614.13 gi|257373075|ref|YP_003175849.1| - 2.7e-36 124.0 0.0 6.7e-36 122.8 0.0 1.6 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|257373075|ref|YP_003175849.1| - 2.4e-11 43.0 0.3 6.7e-10 38.4 0.0 2.8 3 0 0 3 3 3 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|257373075|ref|YP_003175849.1| - 1.5e-05 24.5 0.2 5.7e-05 22.7 0.0 2.0 3 0 0 3 3 3 1 MarR family HTH_5 PF01022.15 gi|257373075|ref|YP_003175849.1| - 3.2e-05 23.5 0.1 0.00011 21.7 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.7 gi|257373075|ref|YP_003175849.1| - 3.6e-05 23.3 0.0 7.7e-05 22.2 0.0 1.6 1 0 0 1 1 1 1 HTH domain HTH_27 PF13463.1 gi|257373075|ref|YP_003175849.1| - 8e-05 22.8 0.1 0.0003 21.0 0.0 2.0 3 0 0 3 3 2 1 Winged helix DNA-binding domain MarR PF01047.17 gi|257373075|ref|YP_003175849.1| - 0.00018 21.1 0.0 0.00038 20.0 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|257373075|ref|YP_003175849.1| - 0.00033 19.9 0.0 0.0011 18.3 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding FeoC PF09012.5 gi|257373075|ref|YP_003175849.1| - 0.0018 17.9 0.0 0.0034 17.0 0.0 1.4 1 0 0 1 1 1 1 FeoC like transcriptional regulator HTH_20 PF12840.2 gi|257373075|ref|YP_003175849.1| - 0.0025 17.5 0.1 0.0071 16.1 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_45 PF14947.1 gi|257373075|ref|YP_003175849.1| - 0.0055 16.4 0.0 0.012 15.4 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DUF3486 PF11985.3 gi|257373075|ref|YP_003175849.1| - 0.014 15.4 0.2 0.041 13.9 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3486) HTH_DeoR PF08220.7 gi|257373075|ref|YP_003175849.1| - 0.029 13.8 0.1 0.12 11.8 0.0 2.1 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain HTH_34 PF13601.1 gi|257373075|ref|YP_003175849.1| - 0.034 14.1 0.0 0.06 13.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain TrmB PF01978.14 gi|257373075|ref|YP_003175849.1| - 0.077 12.7 0.0 0.35 10.5 0.0 2.1 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_WhiA PF02650.9 gi|257373075|ref|YP_003175849.1| - 0.095 13.1 0.1 0.33 11.3 0.1 1.9 1 0 0 1 1 1 0 WhiA C-terminal HTH domain Aldo_ket_red PF00248.16 gi|257373076|ref|YP_003175850.1| - 1.5e-67 227.4 0.0 1.8e-67 227.1 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family PP-binding PF00550.20 gi|257373076|ref|YP_003175850.1| - 0.13 12.5 0.5 0.34 11.1 0.0 1.9 2 0 0 2 2 2 0 Phosphopantetheine attachment site GFO_IDH_MocA PF01408.17 gi|257373077|ref|YP_003175851.1| - 2.4e-19 70.0 0.1 5.4e-19 68.8 0.1 1.6 1 1 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold AP_endonuc_2 PF01261.19 gi|257373077|ref|YP_003175851.1| - 0.012 14.9 0.0 0.018 14.3 0.0 1.3 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel GFO_IDH_MocA_C PF02894.12 gi|257373077|ref|YP_003175851.1| - 0.04 13.6 0.1 0.29 10.9 0.1 2.3 2 1 0 2 2 2 0 Oxidoreductase family, C-terminal alpha/beta domain CoA_binding_2 PF13380.1 gi|257373077|ref|YP_003175851.1| - 0.088 12.9 0.0 0.23 11.6 0.0 1.6 1 0 0 1 1 1 0 CoA binding domain G2F PF07474.7 gi|257373077|ref|YP_003175851.1| - 0.094 12.0 0.0 0.19 11.1 0.0 1.4 1 0 0 1 1 1 0 G2F domain DUF2264 PF10022.4 gi|257373078|ref|YP_003175852.1| - 8.1e-122 406.3 0.3 1e-121 406.0 0.2 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2264) DUF2088 PF09861.4 gi|257373079|ref|YP_003175853.1| - 3.2e-06 26.3 0.0 5e-06 25.6 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF2088) FAA_hydrolase PF01557.13 gi|257373080|ref|YP_003175854.1| - 1e-63 214.7 0.1 1.3e-63 214.3 0.1 1.1 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family DUF2437 PF10370.4 gi|257373080|ref|YP_003175854.1| - 0.0011 19.2 0.2 0.012 15.9 0.0 2.7 3 0 0 3 3 3 1 Domain of unknown function (DUF2437) DUF4147 PF13660.1 gi|257373081|ref|YP_003175855.1| - 4.3e-78 261.7 3.3 4.3e-78 261.7 2.3 1.5 2 0 0 2 2 2 1 Domain of unknown function (DUF4147) MOFRL PF05161.8 gi|257373081|ref|YP_003175855.1| - 2.1e-23 82.4 4.8 5.1e-23 81.2 3.4 1.7 1 0 0 1 1 1 1 MOFRL family PHP_C PF13263.1 gi|257373082|ref|YP_003175856.1| - 1e-06 28.1 0.9 1.4e-05 24.4 0.0 2.7 3 0 0 3 3 3 1 PHP-associated PHP PF02811.14 gi|257373082|ref|YP_003175856.1| - 8.3e-06 25.6 1.2 3.4e-05 23.7 0.8 1.8 1 1 0 1 1 1 1 PHP domain MFS_1 PF07690.11 gi|257373083|ref|YP_003175857.1| - 7.9e-40 136.6 59.2 7.8e-28 97.1 17.3 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|257373083|ref|YP_003175857.1| - 0.0051 15.2 23.2 0.026 12.9 8.3 2.9 1 1 0 2 2 2 2 MFS/sugar transport protein MFS_1_like PF12832.2 gi|257373083|ref|YP_003175857.1| - 0.032 14.0 0.2 0.032 14.0 0.1 3.7 4 1 0 4 4 4 0 MFS_1 like family OATP PF03137.15 gi|257373083|ref|YP_003175857.1| - 0.1 10.5 0.1 0.19 9.7 0.1 1.5 1 0 0 1 1 1 0 Organic Anion Transporter Polypeptide (OATP) family DUF3154 PF11351.3 gi|257373083|ref|YP_003175857.1| - 8.9 6.0 7.4 20 4.9 0.5 3.0 2 1 0 2 2 2 0 Protein of unknown function (DUF3154) Glyco_hydro_88 PF07470.8 gi|257373084|ref|YP_003175858.1| - 2.4e-37 128.7 2.1 2.8e-37 128.5 1.4 1.0 1 0 0 1 1 1 1 Glycosyl Hydrolase Family 88 AAA PF00004.24 gi|257386086|ref|YP_003175859.1| - 1.8e-80 267.5 0.0 5.5e-39 133.3 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.1 gi|257386086|ref|YP_003175859.1| - 9.8e-12 44.8 0.0 0.00016 21.6 0.0 2.3 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.1 gi|257386086|ref|YP_003175859.1| - 2.7e-11 43.2 9.1 0.052 12.9 0.0 5.6 3 2 2 5 5 5 4 AAA domain AAA_17 PF13207.1 gi|257386086|ref|YP_003175859.1| - 1.1e-10 42.3 0.3 0.00082 20.1 0.0 3.3 3 2 0 3 3 2 2 AAA domain AAA_33 PF13671.1 gi|257386086|ref|YP_003175859.1| - 4.3e-10 39.6 0.2 0.00037 20.4 0.0 3.2 3 0 0 3 3 2 2 AAA domain AAA_2 PF07724.9 gi|257386086|ref|YP_003175859.1| - 3.1e-09 36.9 0.0 0.0027 17.6 0.0 2.6 2 1 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_16 PF13191.1 gi|257386086|ref|YP_003175859.1| - 8.6e-09 35.6 12.2 0.0084 16.1 1.6 5.0 3 2 1 4 4 3 2 AAA ATPase domain AAA_5 PF07728.9 gi|257386086|ref|YP_003175859.1| - 8.8e-09 35.2 0.1 0.01 15.5 0.0 3.6 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) RuvB_N PF05496.7 gi|257386086|ref|YP_003175859.1| - 1.1e-08 34.3 0.0 0.002 17.2 0.0 2.3 2 0 0 2 2 2 2 Holliday junction DNA helicase ruvB N-terminus IstB_IS21 PF01695.12 gi|257386086|ref|YP_003175859.1| - 7e-08 32.0 0.0 0.011 15.1 0.0 2.6 2 0 0 2 2 2 2 IstB-like ATP binding protein RNA_helicase PF00910.17 gi|257386086|ref|YP_003175859.1| - 8.1e-08 32.3 0.0 0.021 15.0 0.0 2.6 2 0 0 2 2 2 2 RNA helicase NACHT PF05729.7 gi|257386086|ref|YP_003175859.1| - 1.5e-07 31.2 1.1 1.2 8.7 0.0 4.6 2 2 2 4 4 4 1 NACHT domain Zeta_toxin PF06414.7 gi|257386086|ref|YP_003175859.1| - 1.6e-07 30.6 0.1 0.021 13.9 0.0 3.0 3 0 0 3 3 3 2 Zeta toxin AAA_18 PF13238.1 gi|257386086|ref|YP_003175859.1| - 1.6e-07 31.6 0.0 0.021 15.1 0.0 3.0 4 0 0 4 4 2 2 AAA domain AAA_28 PF13521.1 gi|257386086|ref|YP_003175859.1| - 8e-06 25.9 1.7 0.1 12.5 0.0 3.6 4 1 0 4 4 3 2 AAA domain AAA_19 PF13245.1 gi|257386086|ref|YP_003175859.1| - 1.2e-05 24.9 1.0 0.11 12.2 0.0 3.6 4 0 0 4 4 2 2 Part of AAA domain AAA_22 PF13401.1 gi|257386086|ref|YP_003175859.1| - 1.4e-05 25.2 2.7 0.11 12.5 0.1 4.0 2 2 0 2 2 2 2 AAA domain Viral_helicase1 PF01443.13 gi|257386086|ref|YP_003175859.1| - 2.9e-05 23.6 0.0 0.031 13.7 0.0 2.4 2 0 0 2 2 2 2 Viral (Superfamily 1) RNA helicase ABC_tran PF00005.22 gi|257386086|ref|YP_003175859.1| - 0.00013 22.2 0.0 0.35 11.1 0.0 2.9 2 1 0 2 2 2 2 ABC transporter Mg_chelatase PF01078.16 gi|257386086|ref|YP_003175859.1| - 0.00017 20.8 0.3 0.41 9.7 0.0 2.8 3 0 0 3 3 3 2 Magnesium chelatase, subunit ChlI TIP49 PF06068.8 gi|257386086|ref|YP_003175859.1| - 0.00023 20.0 0.1 0.51 8.9 0.0 2.9 3 0 0 3 3 3 2 TIP49 C-terminus PhoH PF02562.11 gi|257386086|ref|YP_003175859.1| - 0.00079 18.7 0.0 0.87 8.7 0.0 2.3 2 0 0 2 2 2 2 PhoH-like protein AAA_3 PF07726.6 gi|257386086|ref|YP_003175859.1| - 0.0012 18.4 0.0 0.61 9.6 0.0 2.4 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) UPF0079 PF02367.12 gi|257386086|ref|YP_003175859.1| - 0.0015 18.1 0.0 2 8.0 0.0 2.4 2 0 0 2 2 2 2 Uncharacterised P-loop hydrolase UPF0079 Rad17 PF03215.10 gi|257386086|ref|YP_003175859.1| - 0.0021 16.8 0.0 0.9 8.1 0.0 2.1 2 0 0 2 2 2 2 Rad17 cell cycle checkpoint protein SMC_N PF02463.14 gi|257386086|ref|YP_003175859.1| - 0.0027 16.9 0.1 18 4.4 0.0 4.0 4 0 0 4 4 4 0 RecF/RecN/SMC N terminal domain Parvo_NS1 PF01057.12 gi|257386086|ref|YP_003175859.1| - 0.0037 16.1 0.0 0.46 9.3 0.0 2.2 2 0 0 2 2 2 1 Parvovirus non-structural protein NS1 Sigma54_activ_2 PF14532.1 gi|257386086|ref|YP_003175859.1| - 0.0053 16.7 0.6 11 6.0 0.0 3.5 2 2 0 2 2 2 0 Sigma-54 interaction domain AAA_11 PF13086.1 gi|257386086|ref|YP_003175859.1| - 0.016 14.8 0.0 5.5 6.4 0.0 2.7 3 0 0 3 3 2 0 AAA domain AAA_24 PF13479.1 gi|257386086|ref|YP_003175859.1| - 0.017 14.7 2.1 0.83 9.1 0.0 3.1 4 0 0 4 4 3 0 AAA domain Arch_ATPase PF01637.13 gi|257386086|ref|YP_003175859.1| - 0.046 13.4 0.0 1.3 8.6 0.0 2.6 2 1 0 2 2 2 0 Archaeal ATPase DUF815 PF05673.8 gi|257386086|ref|YP_003175859.1| - 0.056 12.3 0.0 7.5 5.3 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF815) SKI PF01202.17 gi|257386086|ref|YP_003175859.1| - 0.077 12.8 0.0 14 5.4 0.0 2.8 2 0 0 2 2 2 0 Shikimate kinase ResIII PF04851.10 gi|257386086|ref|YP_003175859.1| - 0.12 12.2 0.0 8.6 6.1 0.0 2.4 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit Sigma54_activat PF00158.21 gi|257386086|ref|YP_003175859.1| - 0.12 11.8 0.0 22 4.4 0.0 3.0 3 1 0 3 3 2 0 Sigma-54 interaction domain KaiC PF06745.8 gi|257386086|ref|YP_003175859.1| - 0.16 11.0 0.0 11 4.9 0.0 2.6 3 0 0 3 3 3 0 KaiC KTI12 PF08433.5 gi|257386086|ref|YP_003175859.1| - 0.16 11.1 0.0 18 4.4 0.0 2.3 2 0 0 2 2 2 0 Chromatin associated protein KTI12 PduV-EutP PF10662.4 gi|257386086|ref|YP_003175859.1| - 0.25 10.8 0.0 12 5.3 0.0 2.3 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Torsin PF06309.6 gi|257386086|ref|YP_003175859.1| - 0.26 11.1 0.0 22 4.9 0.0 2.4 2 0 0 2 2 2 0 Torsin Thi4 PF01946.12 gi|257386087|ref|YP_003175860.1| - 1.2e-62 211.0 0.2 1.7e-50 171.2 0.1 2.2 2 0 0 2 2 2 2 Thi4 family DAO PF01266.19 gi|257386087|ref|YP_003175860.1| - 4.7e-12 45.4 1.6 1e-07 31.2 0.2 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|257386087|ref|YP_003175860.1| - 2.6e-11 43.0 1.3 2e-08 33.5 0.4 2.2 1 1 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.2 gi|257386087|ref|YP_003175860.1| - 3.2e-11 42.9 0.4 3.2e-11 42.9 0.2 1.4 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|257386087|ref|YP_003175860.1| - 6.9e-10 38.5 0.1 1.2e-09 37.6 0.1 1.4 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.1 gi|257386087|ref|YP_003175860.1| - 2.6e-09 36.9 0.2 6e-09 35.8 0.1 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|257386087|ref|YP_003175860.1| - 6e-08 31.5 0.0 8.1e-08 31.1 0.0 1.2 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox_2 PF07992.9 gi|257386087|ref|YP_003175860.1| - 5.1e-07 29.7 0.1 6.3e-07 29.4 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|257386087|ref|YP_003175860.1| - 5.2e-07 29.9 0.0 7.6e-07 29.3 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|257386087|ref|YP_003175860.1| - 1.3e-05 24.3 0.2 0.0015 17.5 0.1 2.1 2 0 0 2 2 2 1 Lycopene cyclase protein NAD_binding_9 PF13454.1 gi|257386087|ref|YP_003175860.1| - 1.7e-05 24.6 0.5 6.5e-05 22.7 0.1 2.0 2 0 0 2 2 2 1 FAD-NAD(P)-binding Trp_halogenase PF04820.9 gi|257386087|ref|YP_003175860.1| - 2e-05 23.3 0.2 0.0044 15.6 0.1 2.1 2 0 0 2 2 2 2 Tryptophan halogenase Pyr_redox PF00070.22 gi|257386087|ref|YP_003175860.1| - 3.6e-05 24.0 0.9 7.4e-05 23.0 0.2 1.8 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.1 gi|257386087|ref|YP_003175860.1| - 7.6e-05 22.9 0.0 0.00016 21.8 0.0 1.6 1 1 0 1 1 1 1 Putative NAD(P)-binding Amino_oxidase PF01593.19 gi|257386087|ref|YP_003175860.1| - 0.00025 20.2 0.1 0.00088 18.4 0.0 1.9 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase GIDA PF01134.17 gi|257386087|ref|YP_003175860.1| - 0.00039 19.3 0.3 0.00063 18.7 0.2 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A Shikimate_DH PF01488.15 gi|257386087|ref|YP_003175860.1| - 0.01 15.9 0.0 0.077 13.0 0.0 2.2 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase YjeF_N PF03853.10 gi|257386087|ref|YP_003175860.1| - 0.023 14.3 0.1 0.82 9.2 0.0 2.2 2 0 0 2 2 2 0 YjeF-related protein N-terminus TrkA_N PF02254.13 gi|257386087|ref|YP_003175860.1| - 0.024 14.6 1.3 0.03 14.3 0.1 1.8 2 0 0 2 2 2 0 TrkA-N domain DNase-RNase PF02577.9 gi|257386088|ref|YP_003175861.1| - 5.7e-40 135.6 0.0 7.7e-40 135.2 0.0 1.1 1 0 0 1 1 1 1 Bifunctional nuclease Integrase_AP2 PF14657.1 gi|257386089|ref|YP_003175862.1| - 0.25 11.1 1.2 0.46 10.2 0.8 1.4 1 0 0 1 1 1 0 AP2-like DNA-binding integrase domain DUF3194 PF11419.3 gi|257386092|ref|YP_003175865.1| - 0.031 14.4 1.3 0.038 14.1 0.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3194) RVT_2 PF07727.9 gi|257386092|ref|YP_003175865.1| - 0.035 13.0 0.0 0.039 12.9 0.0 1.1 1 0 0 1 1 1 0 Reverse transcriptase (RNA-dependent DNA polymerase) Prefoldin_2 PF01920.15 gi|257386093|ref|YP_003175866.1| - 6.8e-27 93.3 20.6 7.6e-27 93.1 14.3 1.0 1 0 0 1 1 1 1 Prefoldin subunit AAA_27 PF13514.1 gi|257386093|ref|YP_003175866.1| - 0.0012 16.6 10.1 0.0015 16.3 7.0 1.0 1 0 0 1 1 1 1 AAA domain DUF3584 PF12128.3 gi|257386093|ref|YP_003175866.1| - 0.0033 14.8 9.9 0.004 14.5 6.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) FlaC_arch PF05377.6 gi|257386093|ref|YP_003175866.1| - 0.0046 16.8 3.7 0.0046 16.8 2.6 2.5 2 1 0 2 2 2 1 Flagella accessory protein C (FlaC) Laminin_I PF06008.9 gi|257386093|ref|YP_003175866.1| - 0.0053 16.1 16.4 0.13 11.5 1.7 2.1 1 1 0 2 2 2 2 Laminin Domain I Myosin_tail_1 PF01576.14 gi|257386093|ref|YP_003175866.1| - 0.0086 13.8 17.8 0.014 13.1 12.3 1.2 1 0 0 1 1 1 1 Myosin tail ALIX_LYPXL_bnd PF13949.1 gi|257386093|ref|YP_003175866.1| - 0.012 14.6 9.1 0.018 14.0 6.3 1.2 1 0 0 1 1 1 0 ALIX V-shaped domain binding to HIV Sigma70_ner PF04546.8 gi|257386093|ref|YP_003175866.1| - 0.013 15.1 3.2 0.013 15.1 2.2 2.0 1 1 1 2 2 2 0 Sigma-70, non-essential region MAD PF05557.8 gi|257386093|ref|YP_003175866.1| - 0.034 12.2 13.1 0.043 11.9 9.1 1.0 1 0 0 1 1 1 0 Mitotic checkpoint protein Laminin_II PF06009.7 gi|257386093|ref|YP_003175866.1| - 0.043 13.5 9.6 0.064 13.0 6.7 1.3 1 0 0 1 1 1 0 Laminin Domain II BLOC1_2 PF10046.4 gi|257386093|ref|YP_003175866.1| - 0.075 13.1 12.9 0.99 9.5 3.1 2.2 1 1 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Radical_SAM_N PF08497.5 gi|257386093|ref|YP_003175866.1| - 0.1 11.4 2.0 0.13 11.2 1.4 1.1 1 0 0 1 1 1 0 Radical SAM N-terminal Prefoldin PF02996.12 gi|257386093|ref|YP_003175866.1| - 0.12 12.0 18.4 0.8 9.3 12.8 2.2 1 1 0 1 1 1 0 Prefoldin subunit IncA PF04156.9 gi|257386093|ref|YP_003175866.1| - 0.17 11.4 27.2 0.34 10.4 18.9 1.4 1 1 0 1 1 1 0 IncA protein Seryl_tRNA_N PF02403.17 gi|257386093|ref|YP_003175866.1| - 0.17 11.8 15.5 0.12 12.3 1.3 2.1 1 1 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain NPV_P10 PF05531.7 gi|257386093|ref|YP_003175866.1| - 0.21 11.8 8.8 1.1 9.5 0.4 2.3 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein EzrA PF06160.7 gi|257386093|ref|YP_003175866.1| - 0.26 9.4 15.1 0.39 8.8 10.4 1.2 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA Secretin_N PF03958.12 gi|257386093|ref|YP_003175866.1| - 0.27 11.4 3.2 2.6 8.2 0.0 2.4 2 1 0 2 2 2 0 Bacterial type II/III secretion system short domain DUF885 PF05960.6 gi|257386093|ref|YP_003175866.1| - 0.29 10.2 6.0 0.32 10.0 4.2 1.0 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF885) Lebercilin PF15619.1 gi|257386093|ref|YP_003175866.1| - 0.48 9.8 17.2 1.2 8.4 11.9 1.6 1 1 0 1 1 1 0 Ciliary protein causing Leber congenital amaurosis disease Sec8_exocyst PF04048.9 gi|257386093|ref|YP_003175866.1| - 0.49 10.0 7.0 0.14 11.8 2.0 1.9 1 1 1 2 2 2 0 Sec8 exocyst complex component specific domain Cortex-I_coil PF09304.5 gi|257386093|ref|YP_003175866.1| - 0.61 10.1 19.2 0.37 10.8 3.0 2.1 1 1 1 2 2 2 0 Cortexillin I, coiled coil CENP-F_leu_zip PF10473.4 gi|257386093|ref|YP_003175866.1| - 0.74 9.6 22.5 0.98 9.2 4.4 2.1 1 1 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF87 PF01935.12 gi|257386093|ref|YP_003175866.1| - 0.79 9.5 5.7 1 9.1 3.9 1.1 1 0 0 1 1 1 0 Domain of unknown function DUF87 PRP1_N PF06424.7 gi|257386093|ref|YP_003175866.1| - 0.79 10.0 9.2 1.2 9.4 6.4 1.3 1 0 0 1 1 1 0 PRP1 splicing factor, N-terminal Syntaxin PF00804.20 gi|257386093|ref|YP_003175866.1| - 0.85 9.8 7.8 2.1 8.5 0.5 2.2 2 0 0 2 2 2 0 Syntaxin MIS13 PF08202.6 gi|257386093|ref|YP_003175866.1| - 0.89 8.5 8.9 1.1 8.3 6.2 1.1 1 0 0 1 1 1 0 Mis12-Mtw1 protein family WXG100 PF06013.7 gi|257386093|ref|YP_003175866.1| - 1.2 9.1 12.4 6.1 6.9 0.3 2.5 2 1 0 2 2 2 0 Proteins of 100 residues with WXG FlgN PF05130.7 gi|257386093|ref|YP_003175866.1| - 1.2 9.3 14.7 1.8 8.7 10.2 1.2 1 0 0 1 1 1 0 FlgN protein Baculo_PEP_C PF04513.7 gi|257386093|ref|YP_003175866.1| - 1.3 8.8 9.0 2.5 7.9 6.2 1.5 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus Trypan_glycop PF00913.14 gi|257386093|ref|YP_003175866.1| - 1.3 7.8 8.5 3.1 6.6 5.9 1.5 1 1 0 1 1 1 0 Trypanosome variant surface glycoprotein (A-type) DUF2098 PF09871.4 gi|257386093|ref|YP_003175866.1| - 1.5 8.7 11.9 0.21 11.5 2.6 2.1 1 1 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2098) PhoU PF01895.14 gi|257386093|ref|YP_003175866.1| - 1.6 9.1 7.0 0.71 10.3 1.8 2.4 1 1 1 2 2 2 0 PhoU domain PilJ PF13675.1 gi|257386093|ref|YP_003175866.1| - 1.9 8.8 11.8 17 5.7 7.3 2.2 1 1 0 1 1 1 0 Type IV pili methyl-accepting chemotaxis transducer N-term DUF4200 PF13863.1 gi|257386093|ref|YP_003175866.1| - 2.1 8.3 17.6 3.8 7.4 3.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4200) ACCA PF03255.9 gi|257386093|ref|YP_003175866.1| - 2.4 7.7 9.2 1.2 8.6 1.2 2.1 2 0 0 2 2 2 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit Viral_P18 PF04521.8 gi|257386093|ref|YP_003175866.1| - 3 7.2 9.1 0.88 9.0 0.9 2.2 2 0 0 2 2 2 0 ssRNA positive strand viral 18kD cysteine rich protein DUF4140 PF13600.1 gi|257386093|ref|YP_003175866.1| - 3.1 8.3 18.2 0.32 11.4 2.3 2.2 1 1 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) DUF2383 PF09537.5 gi|257386093|ref|YP_003175866.1| - 3.1 8.0 11.9 1.7 8.9 2.4 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF2383) DDE_Tnp_IS66 PF03050.9 gi|257386093|ref|YP_003175866.1| - 3.5 6.7 7.3 3.6 6.7 3.1 1.8 1 1 1 2 2 2 0 Transposase IS66 family DUF2968 PF11180.3 gi|257386093|ref|YP_003175866.1| - 3.6 6.9 16.6 5.8 6.2 5.7 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2968) DUF3450 PF11932.3 gi|257386093|ref|YP_003175866.1| - 3.8 6.7 21.4 1.5 8.0 6.6 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3450) SseC PF04888.7 gi|257386093|ref|YP_003175866.1| - 3.9 6.7 15.0 0.11 11.8 0.4 2.0 2 0 0 2 2 2 0 Secretion system effector C (SseC) like family WASH-7_mid PF14744.1 gi|257386093|ref|YP_003175866.1| - 4 6.1 5.5 4.9 5.8 3.8 1.0 1 0 0 1 1 1 0 WASH complex subunit 7 CDC37_N PF03234.9 gi|257386093|ref|YP_003175866.1| - 4.1 7.6 11.7 5.8 7.1 8.1 1.2 1 0 0 1 1 1 0 Cdc37 N terminal kinase binding eIF3_N PF09440.5 gi|257386093|ref|YP_003175866.1| - 4.3 7.5 14.1 0.59 10.2 2.4 2.1 1 1 1 2 2 2 0 eIF3 subunit 6 N terminal domain Hemerythrin PF01814.18 gi|257386093|ref|YP_003175866.1| - 4.4 7.4 9.8 6.9 6.8 6.8 1.3 1 1 0 1 1 1 0 Hemerythrin HHE cation binding domain Spc24 PF08286.6 gi|257386093|ref|YP_003175866.1| - 4.5 6.9 19.5 2.8 7.6 2.4 2.1 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 ING PF12998.2 gi|257386093|ref|YP_003175866.1| - 4.5 7.5 12.7 14 6.0 8.9 1.8 1 1 0 1 1 1 0 Inhibitor of growth proteins N-terminal histone-binding ERM PF00769.14 gi|257386093|ref|YP_003175866.1| - 4.8 6.6 21.5 9 5.7 14.9 1.3 1 1 0 1 1 1 0 Ezrin/radixin/moesin family GCN5L1 PF06320.8 gi|257386093|ref|YP_003175866.1| - 5 6.9 9.3 6.1 6.7 1.4 2.1 1 1 0 2 2 2 0 GCN5-like protein 1 (GCN5L1) FUSC PF04632.7 gi|257386093|ref|YP_003175866.1| - 5.4 5.3 5.3 7.6 4.8 3.7 1.2 1 0 0 1 1 1 0 Fusaric acid resistance protein family PspA_IM30 PF04012.7 gi|257386093|ref|YP_003175866.1| - 5.5 6.2 20.8 17 4.7 14.4 1.6 1 1 0 1 1 1 0 PspA/IM30 family DUF904 PF06005.7 gi|257386093|ref|YP_003175866.1| - 6 7.2 22.0 0.35 11.1 4.6 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF904) IFT57 PF10498.4 gi|257386093|ref|YP_003175866.1| - 6.4 5.4 15.5 9.4 4.8 3.6 1.8 1 1 0 1 1 1 0 Intra-flagellar transport protein 57 DUF2681 PF10883.3 gi|257386093|ref|YP_003175866.1| - 6.4 7.0 14.0 0.63 10.2 3.6 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2681) DUF964 PF06133.6 gi|257386093|ref|YP_003175866.1| - 7 6.7 20.9 0.4 10.7 6.5 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF964) Flagellin_N PF00669.15 gi|257386093|ref|YP_003175866.1| - 7.8 6.3 9.7 6.2 6.6 4.3 2.0 1 1 1 2 2 2 0 Bacterial flagellin N-terminal helical region bZIP_1 PF00170.16 gi|257386093|ref|YP_003175866.1| - 7.8 6.5 16.3 0.25 11.3 3.2 2.3 2 0 0 2 2 2 0 bZIP transcription factor FlxA PF14282.1 gi|257386093|ref|YP_003175866.1| - 8.6 6.3 19.4 0.71 9.8 1.7 2.2 2 0 0 2 2 2 0 FlxA-like protein DUF1759 PF03564.10 gi|257386093|ref|YP_003175866.1| - 8.9 6.1 7.4 12 5.6 1.4 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1759) Prominin PF05478.6 gi|257386093|ref|YP_003175866.1| - 9.2 3.6 8.5 2.8 5.3 2.4 1.6 1 1 1 2 2 2 0 Prominin Phage_GPO PF05929.6 gi|257386093|ref|YP_003175866.1| - 9.3 5.4 16.1 3.6 6.7 1.5 2.0 1 1 0 2 2 2 0 Phage capsid scaffolding protein (GPO) serine peptidase V_ATPase_I PF01496.14 gi|257386093|ref|YP_003175866.1| - 9.9 3.8 16.9 56 1.3 11.1 1.8 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family Aldo_ket_red PF00248.16 gi|257386094|ref|YP_003175867.1| - 5.5e-55 186.1 0.0 6.7e-55 185.9 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family HTH_10 PF04967.7 gi|257386096|ref|YP_003175869.1| - 5.6e-23 80.2 0.1 1.2e-22 79.2 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain PAS_9 PF13426.1 gi|257386096|ref|YP_003175869.1| - 1.1e-16 61.1 0.0 6.1e-13 49.0 0.0 2.7 2 1 0 2 2 2 2 PAS domain PAS_4 PF08448.5 gi|257386096|ref|YP_003175869.1| - 4.8e-15 55.5 4.2 4.2e-13 49.3 0.1 3.8 4 0 0 4 4 4 1 PAS fold GAF_2 PF13185.1 gi|257386096|ref|YP_003175869.1| - 3.4e-13 50.3 3.8 4.5e-13 49.9 0.4 2.7 3 0 0 3 3 3 1 GAF domain PAS PF00989.19 gi|257386096|ref|YP_003175869.1| - 5e-13 48.8 0.0 8.6e-10 38.4 0.0 2.6 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.1 gi|257386096|ref|YP_003175869.1| - 1.2e-07 31.2 0.0 1.9e-05 24.3 0.0 2.9 2 0 0 2 2 2 1 PAS domain GAF_3 PF13492.1 gi|257386096|ref|YP_003175869.1| - 8.5e-06 25.8 0.1 3.6e-05 23.8 0.0 2.1 2 0 0 2 2 1 1 GAF domain PAS_7 PF12860.2 gi|257386096|ref|YP_003175869.1| - 1.6e-05 24.9 1.9 0.015 15.2 0.1 3.6 2 2 0 2 2 2 2 PAS fold Sigma70_r4 PF04545.11 gi|257386096|ref|YP_003175869.1| - 0.00035 19.8 0.0 0.00035 19.8 0.0 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 MarR_2 PF12802.2 gi|257386096|ref|YP_003175869.1| - 0.00056 19.5 0.8 0.007 16.0 0.1 3.2 2 0 0 2 2 2 1 MarR family PAS_3 PF08447.6 gi|257386096|ref|YP_003175869.1| - 0.0011 19.0 0.0 0.0023 17.9 0.0 1.5 1 0 0 1 1 1 1 PAS fold HTH_24 PF13412.1 gi|257386096|ref|YP_003175869.1| - 0.011 15.0 0.4 0.056 12.8 0.0 2.3 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|257386096|ref|YP_003175869.1| - 0.016 15.0 0.9 0.14 11.9 0.0 2.7 2 0 0 2 2 2 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|257386096|ref|YP_003175869.1| - 0.02 14.3 0.1 0.084 12.3 0.0 2.0 1 1 0 1 1 1 0 Sigma-70, region 4 HTH_5 PF01022.15 gi|257386096|ref|YP_003175869.1| - 0.03 13.9 0.1 0.19 11.4 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family LexA_DNA_bind PF01726.11 gi|257386096|ref|YP_003175869.1| - 0.11 12.0 0.2 0.82 9.2 0.1 2.5 1 1 0 1 1 1 0 LexA DNA binding domain Pcc1 PF09341.5 gi|257386097|ref|YP_003175870.1| - 6.1e-16 58.2 0.0 6.6e-16 58.1 0.0 1.0 1 0 0 1 1 1 1 Transcription factor Pcc1 DNA_RNApol_7kD PF03604.8 gi|257386098|ref|YP_003175871.1| - 3.3e-10 39.2 5.9 4e-10 38.9 4.1 1.1 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit HypA PF01155.14 gi|257386098|ref|YP_003175871.1| - 0.00057 19.5 0.4 0.00059 19.5 0.3 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family DUF329 PF03884.9 gi|257386098|ref|YP_003175871.1| - 0.00095 18.6 0.6 0.46 10.0 0.0 2.1 1 1 1 2 2 2 2 Domain of unknown function (DUF329) zf-ribbon_3 PF13248.1 gi|257386098|ref|YP_003175871.1| - 0.0018 17.4 2.0 0.028 13.6 0.1 2.0 1 1 1 2 2 2 2 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|257386098|ref|YP_003175871.1| - 0.002 17.3 1.0 0.0026 17.0 0.7 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.2 gi|257386098|ref|YP_003175871.1| - 0.0033 17.1 4.6 0.095 12.5 0.1 2.1 2 0 0 2 2 2 1 Transposase zinc-ribbon domain A2L_zn_ribbon PF08792.5 gi|257386098|ref|YP_003175871.1| - 0.0042 16.5 1.4 0.34 10.4 0.0 2.0 1 1 1 2 2 2 2 A2L zinc ribbon domain Cys_rich_CPXG PF14255.1 gi|257386098|ref|YP_003175871.1| - 0.0078 16.0 0.2 0.029 14.1 0.0 2.0 2 0 0 2 2 2 1 Cysteine-rich CPXCG zf-CHCC PF10276.4 gi|257386098|ref|YP_003175871.1| - 0.012 15.3 0.2 0.02 14.7 0.1 1.4 1 0 0 1 1 1 0 Zinc-finger domain DZR PF12773.2 gi|257386098|ref|YP_003175871.1| - 0.016 15.0 0.7 0.046 13.5 0.5 1.7 1 1 0 1 1 1 0 Double zinc ribbon DUF951 PF06107.6 gi|257386098|ref|YP_003175871.1| - 0.018 14.5 1.8 1.1 8.7 0.1 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF951) Sgf11 PF08209.6 gi|257386098|ref|YP_003175871.1| - 0.019 14.2 2.6 0.61 9.4 0.2 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) zf-Di19 PF05605.7 gi|257386098|ref|YP_003175871.1| - 0.024 14.7 0.3 0.61 10.2 0.0 2.1 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding Prok-RING_1 PF14446.1 gi|257386098|ref|YP_003175871.1| - 0.028 14.1 1.6 0.086 12.5 1.2 1.7 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 zf-ISL3 PF14690.1 gi|257386098|ref|YP_003175871.1| - 0.029 14.4 1.5 0.15 12.1 0.1 2.0 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 CpXC PF14353.1 gi|257386098|ref|YP_003175871.1| - 0.037 13.9 1.4 1.3 8.9 0.1 2.0 1 1 1 2 2 2 0 CpXC protein zinc_ribbon_2 PF13240.1 gi|257386098|ref|YP_003175871.1| - 0.039 13.4 4.5 0.38 10.2 3.1 2.1 1 1 0 1 1 1 0 zinc-ribbon domain zf-HIT PF04438.11 gi|257386098|ref|YP_003175871.1| - 0.049 13.2 3.8 0.79 9.4 0.5 2.1 2 0 0 2 2 2 0 HIT zinc finger zf-AN1 PF01428.11 gi|257386098|ref|YP_003175871.1| - 0.05 13.4 0.9 0.1 12.4 0.7 1.5 1 1 1 2 2 2 0 AN1-like Zinc finger zf-C2H2_4 PF13894.1 gi|257386098|ref|YP_003175871.1| - 0.052 13.8 0.7 2.2 8.8 0.0 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger Spt4 PF06093.8 gi|257386098|ref|YP_003175871.1| - 0.053 13.4 0.2 0.062 13.1 0.1 1.0 1 0 0 1 1 1 0 Spt4/RpoE2 zinc finger RNHCP PF12647.2 gi|257386098|ref|YP_003175871.1| - 0.081 12.7 0.5 0.11 12.3 0.4 1.3 1 1 0 1 1 1 0 RNHCP domain zf-RING_3 PF14369.1 gi|257386098|ref|YP_003175871.1| - 0.081 12.9 2.0 0.13 12.2 1.4 1.4 1 0 0 1 1 1 0 zinc-finger TFIIS_C PF01096.13 gi|257386098|ref|YP_003175871.1| - 0.084 12.5 1.8 4.7 6.9 0.0 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) TerY-C PF15616.1 gi|257386098|ref|YP_003175871.1| - 0.084 12.7 0.1 0.091 12.6 0.1 1.2 1 0 0 1 1 1 0 TerY-C metal binding domain OrfB_Zn_ribbon PF07282.6 gi|257386098|ref|YP_003175871.1| - 0.085 12.5 3.0 0.12 12.0 1.9 1.5 1 1 0 1 1 1 0 Putative transposase DNA-binding domain Lar_restr_allev PF14354.1 gi|257386098|ref|YP_003175871.1| - 0.087 13.1 0.7 0.27 11.5 0.0 1.8 1 1 1 2 2 2 0 Restriction alleviation protein Lar zf-TFIIB PF13453.1 gi|257386098|ref|YP_003175871.1| - 0.099 11.8 1.4 0.26 10.5 1.0 1.6 1 1 1 2 2 2 0 Transcription factor zinc-finger Zn_ribbon_recom PF13408.1 gi|257386098|ref|YP_003175871.1| - 0.11 12.8 2.1 1.2 9.4 0.1 2.1 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain C1_1 PF00130.17 gi|257386098|ref|YP_003175871.1| - 0.12 12.1 0.5 0.15 11.7 0.3 1.3 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zinc-ribbons_6 PF07191.7 gi|257386098|ref|YP_003175871.1| - 0.13 12.0 0.4 0.2 11.4 0.3 1.4 1 1 0 1 1 1 0 zinc-ribbons zf-C4_Topoisom PF01396.14 gi|257386098|ref|YP_003175871.1| - 0.14 11.6 1.5 0.49 9.9 0.1 1.9 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_4 PF13717.1 gi|257386098|ref|YP_003175871.1| - 0.18 11.5 6.0 10 5.8 4.1 2.3 1 1 0 1 1 1 0 zinc-ribbon domain DUF3268 PF11672.3 gi|257386098|ref|YP_003175871.1| - 0.21 11.6 1.1 2.7 8.0 0.0 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3268) Thioredoxin_4 PF13462.1 gi|257386098|ref|YP_003175871.1| - 0.25 11.3 1.9 0.37 10.7 0.0 1.9 1 1 1 2 2 2 0 Thioredoxin zinc_ribbon_5 PF13719.1 gi|257386098|ref|YP_003175871.1| - 0.27 10.8 6.4 17 5.0 4.5 2.3 1 1 0 1 1 1 0 zinc-ribbon domain zf-C2H2 PF00096.21 gi|257386098|ref|YP_003175871.1| - 0.5 10.8 2.9 8.8 6.8 0.1 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type Zn-ribbon_8 PF09723.5 gi|257386098|ref|YP_003175871.1| - 0.5 10.3 4.9 3.9 7.5 3.4 2.0 1 1 0 1 1 1 0 Zinc ribbon domain zf-NADH-PPase PF09297.6 gi|257386098|ref|YP_003175871.1| - 0.87 9.1 0.1 0.87 9.1 0.1 2.1 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Mu-like_Com PF10122.4 gi|257386098|ref|YP_003175871.1| - 2.5 7.2 7.1 6 6.0 1.0 2.2 1 1 1 2 2 2 0 Mu-like prophage protein Com UPF0547 PF10571.4 gi|257386098|ref|YP_003175871.1| - 6 6.6 7.4 0.62 9.8 1.3 1.9 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-C2HC_2 PF13913.1 gi|257386098|ref|YP_003175871.1| - 6.1 6.6 7.3 6.2 6.6 0.7 2.2 2 0 0 2 2 2 0 zinc-finger of a C2HC-type Ribosomal_L37ae PF01780.14 gi|257386099|ref|YP_003175872.1| - 1.3e-32 111.5 2.7 1.6e-32 111.2 1.9 1.0 1 0 0 1 1 1 1 Ribosomal L37ae protein family Rubredoxin PF00301.15 gi|257386099|ref|YP_003175872.1| - 0.0013 18.6 6.0 0.24 11.2 0.5 2.3 2 0 0 2 2 2 2 Rubredoxin zf-ribbon_3 PF13248.1 gi|257386099|ref|YP_003175872.1| - 0.0018 17.4 1.2 0.46 9.7 0.0 2.3 2 0 0 2 2 2 2 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|257386099|ref|YP_003175872.1| - 0.0026 17.5 1.2 0.0045 16.7 0.8 1.4 1 0 0 1 1 1 1 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|257386099|ref|YP_003175872.1| - 0.0057 16.2 0.6 0.0089 15.6 0.4 1.3 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Rep_fac-A_C PF08646.5 gi|257386099|ref|YP_003175872.1| - 0.012 15.2 0.4 0.016 14.9 0.2 1.1 1 0 0 1 1 1 0 Replication factor-A C terminal domain zinc_ribbon_2 PF13240.1 gi|257386099|ref|YP_003175872.1| - 0.02 14.3 5.2 0.39 10.2 3.9 2.3 1 1 1 2 2 2 0 zinc-ribbon domain zf-H2C2_2 PF13465.1 gi|257386099|ref|YP_003175872.1| - 0.024 14.9 2.0 1.4 9.3 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger double domain Zn-ribbon_8 PF09723.5 gi|257386099|ref|YP_003175872.1| - 0.027 14.4 4.1 0.083 12.8 0.2 2.3 2 0 0 2 2 2 0 Zinc ribbon domain C1_1 PF00130.17 gi|257386099|ref|YP_003175872.1| - 0.12 12.0 0.3 0.18 11.5 0.2 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-C2H2_4 PF13894.1 gi|257386099|ref|YP_003175872.1| - 0.17 12.3 2.0 7.5 7.1 0.2 2.3 2 0 0 2 2 2 0 C2H2-type zinc finger DZR PF12773.2 gi|257386099|ref|YP_003175872.1| - 0.19 11.5 1.4 0.45 10.3 1.0 1.6 1 1 0 1 1 1 0 Double zinc ribbon zf-RING_3 PF14369.1 gi|257386099|ref|YP_003175872.1| - 0.23 11.4 1.8 0.25 11.3 0.1 1.9 2 0 0 2 2 2 0 zinc-finger DUF4379 PF14311.1 gi|257386099|ref|YP_003175872.1| - 0.24 11.2 2.1 2.2 8.1 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4379) A2L_zn_ribbon PF08792.5 gi|257386099|ref|YP_003175872.1| - 0.31 10.5 3.6 5.1 6.6 0.5 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain RNA_POL_M_15KD PF02150.11 gi|257386099|ref|YP_003175872.1| - 0.38 10.4 4.6 2.5 7.8 3.2 2.0 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit zf-BED PF02892.10 gi|257386099|ref|YP_003175872.1| - 0.41 10.4 3.2 0.5 10.1 1.8 1.5 1 1 0 1 1 1 0 BED zinc finger TF_Zn_Ribbon PF08271.7 gi|257386099|ref|YP_003175872.1| - 0.44 9.9 4.0 0.57 9.5 2.1 1.7 1 1 1 2 2 2 0 TFIIB zinc-binding UPF0547 PF10571.4 gi|257386099|ref|YP_003175872.1| - 0.47 10.1 6.0 6.8 6.4 0.2 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-C2H2 PF00096.21 gi|257386099|ref|YP_003175872.1| - 0.94 9.9 4.0 18 5.9 0.3 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-ISL3 PF14690.1 gi|257386099|ref|YP_003175872.1| - 1.1 9.3 6.8 0.42 10.6 0.5 2.4 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn_ribbon_recom PF13408.1 gi|257386099|ref|YP_003175872.1| - 3.4 7.9 7.4 0.6 10.4 1.5 2.2 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain Prim_Zn_Ribbon PF08273.7 gi|257386099|ref|YP_003175872.1| - 5.1 7.2 8.7 19 5.4 6.0 1.9 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase UPF0016 PF01169.14 gi|257386100|ref|YP_003175873.1| - 1.3e-23 82.8 19.8 3.9e-16 58.9 3.2 2.5 2 0 0 2 2 2 2 Uncharacterized protein family UPF0016 DUF2103 PF09876.4 gi|257386101|ref|YP_003175874.1| - 2.1e-44 149.4 0.3 3.6e-44 148.7 0.2 1.4 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2103) zf-C3HC4_3 PF13920.1 gi|257386101|ref|YP_003175874.1| - 0.11 12.2 1.0 0.16 11.6 0.7 1.3 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) TruD PF01142.13 gi|257386102|ref|YP_003175875.1| - 5.8e-94 314.8 0.0 7.5e-94 314.4 0.0 1.1 1 0 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) Glyco_trans_1_2 PF13524.1 gi|257386102|ref|YP_003175875.1| - 0.015 15.5 0.3 0.044 14.0 0.0 1.9 2 0 0 2 2 2 0 Glycosyl transferases group 1 TerB PF05099.8 gi|257386102|ref|YP_003175875.1| - 0.027 14.1 0.5 1.3 8.7 0.2 2.4 2 0 0 2 2 2 0 Tellurite resistance protein TerB Proteasome PF00227.21 gi|257386103|ref|YP_003175876.1| - 2.6e-46 157.3 0.2 3e-46 157.1 0.1 1.0 1 0 0 1 1 1 1 Proteasome subunit Proteasome PF00227.21 gi|257386104|ref|YP_003175877.1| - 9.1e-59 197.9 0.0 1.1e-58 197.6 0.0 1.1 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.4 gi|257386104|ref|YP_003175877.1| - 2.5e-14 52.2 0.1 4.3e-14 51.5 0.1 1.4 1 0 0 1 1 1 1 Proteasome subunit A N-terminal signature PTH2 PF01981.11 gi|257386105|ref|YP_003175878.1| - 2.5e-38 130.3 0.1 2.8e-38 130.1 0.1 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 DCD PF06559.6 gi|257386106|ref|YP_003175879.1| - 5.9e-16 57.8 0.0 3.3e-11 42.1 0.0 2.1 1 1 1 2 2 2 2 2'-deoxycytidine 5'-triphosphate deaminase (DCD) dUTPase PF00692.14 gi|257386106|ref|YP_003175879.1| - 4.2e-15 55.3 0.0 6.3e-15 54.7 0.0 1.2 1 0 0 1 1 1 1 dUTPase Cupin_2 PF07883.6 gi|257386106|ref|YP_003175879.1| - 0.071 12.6 0.1 0.75 9.3 0.0 2.4 2 0 0 2 2 2 0 Cupin domain Aldolase_2 PF10120.4 gi|257386107|ref|YP_003175880.1| - 7.5e-46 155.6 0.0 1.3e-45 154.8 0.0 1.4 1 0 0 1 1 1 1 Putative aldolase HTH_3 PF01381.17 gi|257386107|ref|YP_003175880.1| - 8.3e-08 31.9 0.2 2.3e-07 30.5 0.2 1.9 1 1 0 1 1 1 1 Helix-turn-helix HTH_37 PF13744.1 gi|257386107|ref|YP_003175880.1| - 2.9e-06 26.9 0.0 5.7e-06 26.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|257386107|ref|YP_003175880.1| - 7.8e-06 25.9 1.1 2.7e-05 24.2 0.8 2.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|257386107|ref|YP_003175880.1| - 4e-05 23.7 0.0 7.8e-05 22.8 0.0 1.4 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain MarR_2 PF12802.2 gi|257386107|ref|YP_003175880.1| - 5.8e-05 22.6 0.1 0.00098 18.7 0.0 2.8 3 0 0 3 3 3 1 MarR family HTH_19 PF12844.2 gi|257386107|ref|YP_003175880.1| - 5.8e-05 23.0 0.1 0.00012 22.0 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|257386107|ref|YP_003175880.1| - 0.00016 20.9 0.0 0.00037 19.7 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_24 PF13412.1 gi|257386107|ref|YP_003175880.1| - 0.00036 19.8 0.1 0.0013 18.1 0.0 1.9 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|257386107|ref|YP_003175880.1| - 0.00052 19.6 0.1 0.0017 17.9 0.1 1.9 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_23 PF13384.1 gi|257386107|ref|YP_003175880.1| - 0.0055 16.3 0.0 0.018 14.7 0.0 1.8 1 0 0 1 1 1 1 Homeodomain-like domain HTH_17 PF12728.2 gi|257386107|ref|YP_003175880.1| - 0.0074 16.5 0.0 0.018 15.3 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.1 gi|257386107|ref|YP_003175880.1| - 0.014 14.9 0.0 0.046 13.2 0.0 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|257386107|ref|YP_003175880.1| - 0.015 14.7 0.1 0.034 13.6 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_Tnp_ISL3 PF13542.1 gi|257386107|ref|YP_003175880.1| - 0.019 14.1 0.0 0.054 12.6 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_IclR PF09339.5 gi|257386107|ref|YP_003175880.1| - 0.019 14.5 0.6 0.22 11.1 0.1 2.8 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_8 PF02954.14 gi|257386107|ref|YP_003175880.1| - 0.035 13.6 0.1 0.09 12.3 0.1 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family MarR PF01047.17 gi|257386107|ref|YP_003175880.1| - 0.036 13.7 0.0 2 8.1 0.0 2.7 3 0 0 3 3 2 0 MarR family HTH_1 PF00126.22 gi|257386107|ref|YP_003175880.1| - 0.054 13.2 0.4 0.2 11.4 0.0 2.0 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family P22_Cro PF14549.1 gi|257386107|ref|YP_003175880.1| - 0.057 13.1 0.0 0.14 11.9 0.0 1.6 1 0 0 1 1 1 0 DNA-binding transcriptional regulator Cro MoCF_biosynth PF00994.19 gi|257386107|ref|YP_003175880.1| - 0.058 12.7 0.3 0.17 11.3 0.2 1.7 2 0 0 2 2 2 0 Probable molybdopterin binding domain HTH_Crp_2 PF13545.1 gi|257386107|ref|YP_003175880.1| - 0.063 13.0 0.0 0.39 10.5 0.0 2.3 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain HTH_20 PF12840.2 gi|257386107|ref|YP_003175880.1| - 0.066 13.0 0.4 0.62 9.9 0.0 2.7 2 0 0 2 2 2 0 Helix-turn-helix domain Cro PF09048.5 gi|257386107|ref|YP_003175880.1| - 0.1 12.2 0.0 0.31 10.7 0.0 1.8 2 0 0 2 2 1 0 Cro HTH_10 PF04967.7 gi|257386107|ref|YP_003175880.1| - 0.11 12.0 0.1 0.4 10.2 0.0 1.9 2 0 0 2 2 1 0 HTH DNA binding domain RHH_2 PF03693.9 gi|257386107|ref|YP_003175880.1| - 0.14 12.3 0.5 8.5 6.6 0.1 2.4 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0156) HTH_Tnp_4 PF13613.1 gi|257386107|ref|YP_003175880.1| - 0.16 11.5 0.0 0.47 10.0 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix of DDE superfamily endonuclease Methyltransf_11 PF08241.7 gi|257386108|ref|YP_003175881.1| - 1.9e-10 41.1 0.0 3.6e-10 40.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|257386108|ref|YP_003175881.1| - 1.5e-08 34.5 0.0 2.3e-08 33.9 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|257386108|ref|YP_003175881.1| - 3e-07 30.1 0.0 3.5e-07 29.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|257386108|ref|YP_003175881.1| - 1.1e-05 24.7 0.0 1.3e-05 24.4 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.7 gi|257386108|ref|YP_003175881.1| - 6.5e-05 23.3 0.0 0.00013 22.4 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|257386108|ref|YP_003175881.1| - 0.00012 22.3 0.1 0.00025 21.3 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|257386108|ref|YP_003175881.1| - 0.00019 21.9 0.1 0.00029 21.3 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|257386108|ref|YP_003175881.1| - 0.0011 18.5 0.0 0.0016 17.9 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_26 PF13659.1 gi|257386108|ref|YP_003175881.1| - 0.0068 16.4 2.7 0.015 15.3 1.9 1.6 1 1 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.14 gi|257386108|ref|YP_003175881.1| - 0.098 12.6 0.0 0.13 12.2 0.0 1.2 1 0 0 1 1 1 0 FtsJ-like methyltransferase HMGL-like PF00682.14 gi|257386110|ref|YP_003175883.1| - 3.5e-60 203.6 0.6 7.1e-60 202.6 0.4 1.5 1 0 0 1 1 1 1 HMGL-like LeuA_dimer PF08502.5 gi|257386110|ref|YP_003175883.1| - 8.2e-29 100.0 0.7 1.5e-28 99.2 0.5 1.5 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain AP_endonuc_2 PF01261.19 gi|257386110|ref|YP_003175883.1| - 0.017 14.3 0.8 0.067 12.4 0.1 2.3 2 1 0 2 2 2 0 Xylose isomerase-like TIM barrel F_bP_aldolase PF01116.15 gi|257386110|ref|YP_003175883.1| - 0.043 12.9 0.4 0.21 10.6 0.0 2.1 2 0 0 2 2 2 0 Fructose-bisphosphate aldolase class-II Cu_amine_oxidN1 PF07833.6 gi|257386110|ref|YP_003175883.1| - 0.043 14.1 0.1 0.12 12.7 0.1 1.7 1 0 0 1 1 1 0 Copper amine oxidase N-terminal domain DUF192 PF02643.10 gi|257386111|ref|YP_003175884.1| - 3.7e-19 68.4 0.0 4.9e-19 68.0 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 C1_1 PF00130.17 gi|257386112|ref|YP_003175885.1| - 0.02 14.5 2.2 0.032 13.9 0.2 2.1 2 0 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) HNH PF01844.18 gi|257386112|ref|YP_003175885.1| - 0.078 12.8 3.1 0.19 11.6 2.1 1.7 1 0 0 1 1 1 0 HNH endonuclease HATPase_c PF02518.21 gi|257386113|ref|YP_003175886.1| - 1.3e-12 47.4 0.0 2.6e-12 46.4 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|257386113|ref|YP_003175886.1| - 2.3e-05 24.1 0.0 4.5e-05 23.2 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.1 gi|257386113|ref|YP_003175886.1| - 0.00018 21.1 0.0 0.00041 20.0 0.0 1.5 1 0 0 1 1 1 1 GHKL domain HisKA PF00512.20 gi|257386113|ref|YP_003175886.1| - 0.0061 16.5 0.2 0.013 15.4 0.1 1.6 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain DUF1049 PF06305.6 gi|257386113|ref|YP_003175886.1| - 0.018 14.5 0.0 0.018 14.5 0.0 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF1049) GATase PF00117.23 gi|257386114|ref|YP_003175887.1| - 1.1e-35 122.8 0.0 1.3e-35 122.6 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|257386114|ref|YP_003175887.1| - 5e-13 48.9 0.4 7.2e-12 45.2 0.0 2.4 2 1 0 2 2 2 1 Peptidase C26 DUF2070 PF09843.4 gi|257386115|ref|YP_003175888.1| - 8e-55 185.0 0.1 1.3e-54 184.3 0.0 1.4 1 0 0 1 1 1 1 Predicted membrane protein (DUF2070) DUF4131 PF13567.1 gi|257386115|ref|YP_003175888.1| - 0.072 12.4 0.0 0.072 12.4 0.0 3.0 2 1 1 3 3 3 0 Domain of unknown function (DUF4131) Peptidase_M3 PF01432.15 gi|257386116|ref|YP_003175889.1| - 8.1e-21 74.5 0.0 1.2e-20 74.0 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M3 DinB_2 PF12867.2 gi|257386116|ref|YP_003175889.1| - 1.2 9.4 8.9 8.7 6.7 2.9 3.7 2 1 0 2 2 2 0 DinB superfamily AAA_3 PF07726.6 gi|257386117|ref|YP_003175890.1| - 9.9e-67 222.5 0.1 1.7e-66 221.7 0.1 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|257386117|ref|YP_003175890.1| - 2.3e-14 53.2 0.0 5.8e-14 52.0 0.0 1.7 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|257386117|ref|YP_003175890.1| - 3.2e-06 26.1 0.0 0.00021 20.1 0.0 2.2 2 0 0 2 2 2 1 MCM2/3/5 family AAA PF00004.24 gi|257386117|ref|YP_003175890.1| - 6.2e-06 26.4 0.0 1.9e-05 24.8 0.0 1.9 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.16 gi|257386117|ref|YP_003175890.1| - 2.9e-05 23.3 0.2 0.025 13.7 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.21 gi|257386117|ref|YP_003175890.1| - 5.1e-05 22.8 0.0 0.00071 19.0 0.0 2.2 1 1 0 1 1 1 1 Sigma-54 interaction domain RuvB_N PF05496.7 gi|257386117|ref|YP_003175890.1| - 0.0031 16.6 0.0 0.033 13.2 0.0 2.2 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_2 PF07724.9 gi|257386117|ref|YP_003175890.1| - 0.0098 15.8 0.0 0.022 14.6 0.0 1.5 1 1 0 1 1 1 1 AAA domain (Cdc48 subfamily) AAA_22 PF13401.1 gi|257386117|ref|YP_003175890.1| - 0.13 12.4 0.1 0.71 10.0 0.0 2.1 2 1 0 2 2 2 0 AAA domain DUF204 PF02659.10 gi|257386118|ref|YP_003175891.1| - 5.3 7.2 14.6 0.2 11.7 3.6 2.4 2 1 0 2 2 2 0 Domain of unknown function DUF DUF58 PF01882.13 gi|257386119|ref|YP_003175892.1| - 1e-20 73.6 0.5 2.3e-20 72.5 0.3 1.6 1 0 0 1 1 1 1 Protein of unknown function DUF58 DUF11 PF01345.13 gi|257386119|ref|YP_003175892.1| - 2e-05 24.5 1.9 2e-05 24.5 1.3 2.7 3 0 0 3 3 3 1 Domain of unknown function DUF11 DUF308 PF03729.8 gi|257386120|ref|YP_003175893.1| - 0.063 13.2 0.8 0.11 12.4 0.6 1.3 1 0 0 1 1 1 0 Short repeat of unknown function (DUF308) DUF4129 PF13559.1 gi|257386121|ref|YP_003175894.1| - 3.5e-09 36.4 12.5 3.5e-09 36.4 8.7 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF4129) Oxidored_q2 PF00420.19 gi|257386121|ref|YP_003175894.1| - 0.041 13.4 0.1 0.041 13.4 0.0 1.8 2 0 0 2 2 2 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF2857 PF11198.3 gi|257386121|ref|YP_003175894.1| - 0.13 11.7 0.1 0.2 11.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2857) DUF3318 PF11780.3 gi|257386121|ref|YP_003175894.1| - 8.6 5.9 11.2 0.22 11.1 0.2 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF3318) Hydantoinase_B PF02538.9 gi|257386122|ref|YP_003175895.1| - 1.4e-146 488.8 0.0 2.2e-146 488.1 0.0 1.2 1 1 0 1 1 1 1 Hydantoinase B/oxoprolinase Hydantoinase_A PF01968.13 gi|257386123|ref|YP_003175896.1| - 2.2e-88 296.1 17.8 3.7e-86 288.8 7.0 2.3 2 0 0 2 2 2 2 Hydantoinase/oxoprolinase Hydant_A_N PF05378.8 gi|257386123|ref|YP_003175896.1| - 6.6e-48 162.5 3.1 3e-47 160.4 0.1 2.6 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.1 gi|257386123|ref|YP_003175896.1| - 0.00022 19.7 8.2 0.034 12.4 0.3 2.3 2 0 0 2 2 2 2 MutL protein EutA PF06277.6 gi|257386123|ref|YP_003175896.1| - 0.0023 16.6 0.4 0.0023 16.6 0.3 2.0 2 0 0 2 2 2 1 Ethanolamine utilisation protein EutA FtsA PF14450.1 gi|257386123|ref|YP_003175896.1| - 0.036 13.9 3.7 0.78 9.5 0.1 2.6 2 0 0 2 2 2 0 Cell division protein FtsA BcrAD_BadFG PF01869.15 gi|257386123|ref|YP_003175896.1| - 0.039 13.2 3.8 0.14 11.4 2.5 2.0 1 1 0 1 1 1 0 BadF/BadG/BcrA/BcrD ATPase family Chorismate_bind PF00425.13 gi|257386126|ref|YP_003175899.1| - 1.1e-66 224.8 0.0 1.5e-66 224.3 0.0 1.2 1 0 0 1 1 1 1 chorismate binding enzyme Baseplate_J PF04865.9 gi|257386126|ref|YP_003175899.1| - 0.032 13.5 0.1 0.058 12.7 0.1 1.3 1 0 0 1 1 1 0 Baseplate J-like protein SecIII_SopE_N PF05364.9 gi|257386127|ref|YP_003175900.1| - 0.027 14.2 0.1 0.03 14.1 0.0 1.2 1 0 0 1 1 1 0 Salmonella type III secretion SopE effector N-terminus DUF217 PF02697.9 gi|257386127|ref|YP_003175900.1| - 0.03 14.5 0.5 0.032 14.4 0.3 1.1 1 0 0 1 1 1 0 Uncharacterized ACR, COG1753 Regulator_TrmB PF11495.3 gi|257386128|ref|YP_003175901.1| - 1.7e-44 151.5 0.0 2.2e-44 151.2 0.0 1.1 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.14 gi|257386128|ref|YP_003175901.1| - 9.5e-15 54.0 0.0 1.5e-14 53.4 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|257386128|ref|YP_003175901.1| - 0.039 13.6 0.0 0.078 12.6 0.0 1.5 1 0 0 1 1 1 0 MarR family NAD_Gly3P_dh_N PF01210.18 gi|257386128|ref|YP_003175901.1| - 0.074 12.7 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus HTH_29 PF13551.1 gi|257386128|ref|YP_003175901.1| - 0.12 12.5 0.0 0.23 11.5 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn helix Usp PF00582.21 gi|257386129|ref|YP_003175902.1| - 1e-08 35.4 0.9 1.6e-08 34.8 0.6 1.3 1 1 0 1 1 1 1 Universal stress protein family B12-binding PF02310.14 gi|257386129|ref|YP_003175902.1| - 0.058 13.2 1.1 0.14 12.0 0.1 1.8 2 0 0 2 2 2 0 B12 binding domain Thiolase_N PF00108.18 gi|257386129|ref|YP_003175902.1| - 0.08 11.9 0.1 0.12 11.3 0.1 1.2 1 0 0 1 1 1 0 Thiolase, N-terminal domain ABC_tran PF00005.22 gi|257386131|ref|YP_003175904.1| - 2.9e-28 98.8 0.0 4.2e-28 98.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|257386131|ref|YP_003175904.1| - 9e-14 51.5 0.3 2e-13 50.4 0.2 1.7 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|257386131|ref|YP_003175904.1| - 1.1e-08 35.4 0.0 8.4e-05 22.6 0.0 2.2 1 1 1 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|257386131|ref|YP_003175904.1| - 7.6e-06 26.0 0.9 0.00011 22.3 0.6 2.3 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|257386131|ref|YP_003175904.1| - 0.006 15.7 0.0 0.011 14.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|257386131|ref|YP_003175904.1| - 0.014 14.8 0.1 0.028 13.9 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain NB-ARC PF00931.17 gi|257386131|ref|YP_003175904.1| - 0.017 13.9 0.1 0.034 13.0 0.1 1.4 1 0 0 1 1 1 0 NB-ARC domain AAA_16 PF13191.1 gi|257386131|ref|YP_003175904.1| - 0.027 14.4 0.2 0.049 13.6 0.1 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_10 PF12846.2 gi|257386131|ref|YP_003175904.1| - 0.049 13.0 0.4 1.4 8.2 0.1 2.2 1 1 0 2 2 2 0 AAA-like domain UPF0079 PF02367.12 gi|257386131|ref|YP_003175904.1| - 0.067 12.8 0.1 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA PF00004.24 gi|257386131|ref|YP_003175904.1| - 0.071 13.3 0.1 0.58 10.3 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.7 gi|257386131|ref|YP_003175904.1| - 0.078 12.6 0.5 0.17 11.5 0.3 1.5 1 0 0 1 1 1 0 NACHT domain Cytochrom_C PF00034.16 gi|257386131|ref|YP_003175904.1| - 0.08 13.7 0.2 0.23 12.2 0.0 1.8 2 0 0 2 2 1 0 Cytochrome c BCA_ABC_TP_C PF12399.3 gi|257386131|ref|YP_003175904.1| - 0.15 11.8 2.2 0.57 9.9 0.1 2.6 2 0 0 2 2 2 0 Branched-chain amino acid ATP-binding cassette transporter RNA_helicase PF00910.17 gi|257386131|ref|YP_003175904.1| - 0.15 12.2 0.0 0.31 11.2 0.0 1.5 1 0 0 1 1 1 0 RNA helicase PduV-EutP PF10662.4 gi|257386131|ref|YP_003175904.1| - 0.17 11.3 0.1 0.29 10.6 0.1 1.3 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation PocR PF10114.4 gi|257386131|ref|YP_003175904.1| - 0.2 10.8 0.8 0.34 10.0 0.6 1.3 1 0 0 1 1 1 0 Sensory domain found in PocR ABC_tran PF00005.22 gi|257386132|ref|YP_003175905.1| - 7.8e-24 84.5 0.0 1.1e-23 84.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|257386132|ref|YP_003175905.1| - 1.8e-18 66.6 1.0 3.3e-18 65.7 0.7 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|257386132|ref|YP_003175905.1| - 3.3e-09 37.1 1.9 1e-07 32.2 1.3 2.3 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|257386132|ref|YP_003175905.1| - 0.00029 20.2 0.0 0.0029 17.0 0.0 2.1 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.14 gi|257386132|ref|YP_003175905.1| - 0.0018 17.5 0.3 0.64 9.2 0.1 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|257386132|ref|YP_003175905.1| - 0.0023 17.9 0.0 0.005 16.8 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|257386132|ref|YP_003175905.1| - 0.0026 17.9 0.3 0.017 15.2 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|257386132|ref|YP_003175905.1| - 0.0029 17.0 0.1 0.0063 15.9 0.1 1.6 1 1 1 2 2 2 1 AAA-like domain ABC_ATPase PF09818.4 gi|257386132|ref|YP_003175905.1| - 0.0042 15.7 0.2 0.027 13.0 0.0 2.0 2 0 0 2 2 2 1 Predicted ATPase of the ABC class NACHT PF05729.7 gi|257386132|ref|YP_003175905.1| - 0.0065 16.1 0.0 0.011 15.3 0.0 1.4 1 0 0 1 1 1 1 NACHT domain AAA_29 PF13555.1 gi|257386132|ref|YP_003175905.1| - 0.013 14.9 0.0 0.024 14.1 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF258 PF03193.11 gi|257386132|ref|YP_003175905.1| - 0.019 14.1 0.0 0.031 13.4 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 FtsK_SpoIIIE PF01580.13 gi|257386132|ref|YP_003175905.1| - 0.035 13.5 0.0 0.065 12.7 0.0 1.3 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_15 PF13175.1 gi|257386132|ref|YP_003175905.1| - 0.041 12.9 0.0 0.16 10.9 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain MMR_HSR1 PF01926.18 gi|257386132|ref|YP_003175905.1| - 0.046 13.6 0.0 0.079 12.9 0.0 1.4 1 0 0 1 1 1 0 50S ribosome-binding GTPase Neuro_bHLH PF12533.3 gi|257386132|ref|YP_003175905.1| - 0.061 14.1 0.1 0.13 13.0 0.0 1.5 1 0 0 1 1 1 0 Neuronal helix-loop-helix transcription factor AAA_23 PF13476.1 gi|257386132|ref|YP_003175905.1| - 0.072 13.4 0.0 0.1 12.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|257386132|ref|YP_003175905.1| - 0.09 12.9 0.0 0.17 12.0 0.0 1.4 1 0 0 1 1 1 0 RNA helicase BPD_transp_1 PF00528.17 gi|257386133|ref|YP_003175906.1| - 7.4e-25 87.5 15.7 7.4e-25 87.5 10.9 2.1 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component PepSY_TM_2 PF13703.1 gi|257386133|ref|YP_003175906.1| - 2.6 8.2 8.2 3 8.0 0.0 3.7 4 0 0 4 4 4 0 PepSY-associated TM helix BPD_transp_1 PF00528.17 gi|257386134|ref|YP_003175907.1| - 9.7e-39 132.7 13.2 9.7e-39 132.7 9.1 1.7 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Bacillus_PapR PF05968.6 gi|257386134|ref|YP_003175907.1| - 3.9 7.6 5.8 18 5.5 0.5 2.8 2 0 0 2 2 2 0 Bacillus PapR protein SBP_bac_5 PF00496.17 gi|257386135|ref|YP_003175908.1| - 8.9e-43 146.5 2.9 8.9e-43 146.5 2.0 1.4 2 0 0 2 2 2 1 Bacterial extracellular solute-binding proteins, family 5 Middle Alpha-amylase PF00128.19 gi|257386136|ref|YP_003175909.1| - 3.7e-97 325.5 0.2 5.1e-97 325.0 0.1 1.1 1 0 0 1 1 1 1 Alpha amylase, catalytic domain DUF3459 PF11941.3 gi|257386136|ref|YP_003175909.1| - 0.027 14.5 0.0 0.068 13.3 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF3459) hDGE_amylase PF14701.1 gi|257386136|ref|YP_003175909.1| - 0.11 11.4 0.0 0.19 10.5 0.0 1.3 1 0 0 1 1 1 0 glucanotransferase domain of human glycogen debranching enzyme Alpha-amylase PF00128.19 gi|257386137|ref|YP_003175910.1| - 9.4e-98 327.4 0.7 1.6e-97 326.6 0.5 1.4 1 0 0 1 1 1 1 Alpha amylase, catalytic domain DUF3459 PF11941.3 gi|257386137|ref|YP_003175910.1| - 3.5e-05 23.8 0.0 9.8e-05 22.4 0.0 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF3459) hDGE_amylase PF14701.1 gi|257386137|ref|YP_003175910.1| - 0.02 13.7 0.0 0.033 13.1 0.0 1.2 1 0 0 1 1 1 0 glucanotransferase domain of human glycogen debranching enzyme Cyc-maltodext_C PF10438.4 gi|257386137|ref|YP_003175910.1| - 0.14 12.2 0.0 0.36 10.9 0.0 1.7 1 0 0 1 1 1 0 Cyclo-malto-dextrinase C-terminal domain HTH_24 PF13412.1 gi|257386138|ref|YP_003175911.1| - 1.1e-08 34.3 0.1 2.8e-05 23.4 0.1 2.6 3 0 0 3 3 3 2 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|257386138|ref|YP_003175911.1| - 2.6e-06 26.8 0.7 0.0013 18.2 0.4 2.6 2 0 0 2 2 2 2 AsnC-type helix-turn-helix domain Sigma70_r4 PF04545.11 gi|257386138|ref|YP_003175911.1| - 5.5e-05 22.3 0.0 0.00011 21.4 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 MarR_2 PF12802.2 gi|257386138|ref|YP_003175911.1| - 0.00011 21.7 0.1 0.00043 19.9 0.1 1.9 2 0 0 2 2 2 1 MarR family HTH_11 PF08279.7 gi|257386138|ref|YP_003175911.1| - 0.00081 18.9 0.1 0.0023 17.5 0.0 1.8 1 0 0 1 1 1 1 HTH domain HTH_38 PF13936.1 gi|257386138|ref|YP_003175911.1| - 0.0011 18.5 0.4 0.0024 17.3 0.3 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|257386138|ref|YP_003175911.1| - 0.0014 18.3 0.0 0.0054 16.4 0.0 2.0 2 0 0 2 2 2 1 MarR family Sigma70_ner PF04546.8 gi|257386138|ref|YP_003175911.1| - 0.048 13.2 10.1 0.28 10.7 4.6 2.1 2 0 0 2 2 2 0 Sigma-70, non-essential region Matrilin_ccoil PF10393.4 gi|257386138|ref|YP_003175911.1| - 0.075 12.4 0.4 0.14 11.4 0.3 1.5 1 0 0 1 1 1 0 Trimeric coiled-coil oligomerisation domain of matrilin Prefoldin PF02996.12 gi|257386138|ref|YP_003175911.1| - 0.098 12.3 0.3 0.26 10.9 0.2 1.7 1 0 0 1 1 1 0 Prefoldin subunit HTH_Tnp_Tc3_2 PF01498.13 gi|257386138|ref|YP_003175911.1| - 0.22 11.5 3.1 13 5.8 0.4 2.6 3 0 0 3 3 3 0 Transposase HSCB_C PF07743.8 gi|257386138|ref|YP_003175911.1| - 1 9.8 6.4 2.1 8.8 0.2 2.9 3 0 0 3 3 3 0 HSCB C-terminal oligomerisation domain Pol_alpha_B_N PF08418.5 gi|257386139|ref|YP_003175912.1| - 7.4 6.0 11.9 11 5.4 8.2 1.2 1 0 0 1 1 1 0 DNA polymerase alpha subunit B N-terminal DUF1573 PF07610.6 gi|257386140|ref|YP_003175913.1| - 0.0022 17.5 0.5 0.026 14.0 0.2 2.7 2 0 0 2 2 2 1 Protein of unknown function (DUF1573) Zn_peptidase_2 PF04298.7 gi|257386141|ref|YP_003175914.1| - 0.26 10.6 1.9 2.1 7.6 0.1 2.3 2 0 0 2 2 2 0 Putative neutral zinc metallopeptidase DUF217 PF02697.9 gi|257386142|ref|YP_003175915.1| - 3e-15 56.2 0.6 3.7e-15 55.9 0.3 1.2 1 1 0 1 1 1 1 Uncharacterized ACR, COG1753 RHH_1 PF01402.16 gi|257386142|ref|YP_003175915.1| - 0.36 10.7 0.1 0.36 10.7 0.1 3.0 3 1 0 3 3 3 0 Ribbon-helix-helix protein, copG family PIN PF01850.16 gi|257386143|ref|YP_003175916.1| - 6.5e-09 36.1 0.0 7e-09 36.0 0.0 1.0 1 0 0 1 1 1 1 PIN domain RgpF PF05045.7 gi|257386143|ref|YP_003175916.1| - 0.078 11.4 0.0 0.093 11.2 0.0 1.0 1 0 0 1 1 1 0 Rhamnan synthesis protein F DDE_Tnp_IS240 PF13610.1 gi|257386144|ref|YP_003175917.1| - 2.6e-14 53.3 0.1 3.3e-14 53.0 0.1 1.2 1 0 0 1 1 1 1 DDE domain DDE_Tnp_IS66 PF03050.9 gi|257386144|ref|YP_003175917.1| - 9e-06 25.0 0.2 2.2e-05 23.8 0.1 1.7 1 1 0 1 1 1 1 Transposase IS66 family rve PF00665.21 gi|257386144|ref|YP_003175917.1| - 7.1e-05 22.8 0.1 0.0001 22.3 0.1 1.3 1 0 0 1 1 1 1 Integrase core domain DDE_3 PF13358.1 gi|257386144|ref|YP_003175917.1| - 0.088 12.5 0.0 0.23 11.1 0.0 1.6 2 0 0 2 2 2 0 DDE superfamily endonuclease ABC_tran PF00005.22 gi|257386145|ref|YP_003175918.1| - 1.5e-30 106.2 0.0 2.1e-30 105.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|257386145|ref|YP_003175918.1| - 5.7e-07 29.7 0.0 0.0014 18.6 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|257386145|ref|YP_003175918.1| - 0.00026 21.0 1.4 0.00045 20.2 1.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_19 PF13245.1 gi|257386145|ref|YP_003175918.1| - 0.00048 19.8 0.4 0.0013 18.4 0.0 1.9 2 0 0 2 2 2 1 Part of AAA domain SMC_N PF02463.14 gi|257386145|ref|YP_003175918.1| - 0.00065 19.0 0.0 0.014 14.6 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|257386145|ref|YP_003175918.1| - 0.0015 17.9 0.1 0.0035 16.8 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|257386145|ref|YP_003175918.1| - 0.0033 16.6 0.1 0.0047 16.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 T2SE PF00437.15 gi|257386145|ref|YP_003175918.1| - 0.0036 16.2 0.1 0.0056 15.6 0.1 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein SbcCD_C PF13558.1 gi|257386145|ref|YP_003175918.1| - 0.0041 17.0 0.2 0.044 13.7 0.1 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_17 PF13207.1 gi|257386145|ref|YP_003175918.1| - 0.029 15.1 0.1 0.057 14.2 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|257386145|ref|YP_003175918.1| - 0.035 13.6 0.0 0.07 12.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|257386145|ref|YP_003175918.1| - 0.041 13.5 0.0 0.09 12.4 0.0 1.7 2 0 0 2 2 2 0 NACHT domain Metal_resist PF13801.1 gi|257386145|ref|YP_003175918.1| - 0.058 13.3 1.4 0.27 11.2 0.0 2.2 2 0 0 2 2 2 0 Heavy-metal resistance Sigma54_activat PF00158.21 gi|257386145|ref|YP_003175918.1| - 0.059 12.8 0.0 0.12 11.8 0.0 1.5 1 1 0 1 1 1 0 Sigma-54 interaction domain AAA_10 PF12846.2 gi|257386145|ref|YP_003175918.1| - 0.07 12.5 0.0 0.29 10.5 0.0 1.9 2 1 0 2 2 2 0 AAA-like domain AAA_33 PF13671.1 gi|257386145|ref|YP_003175918.1| - 0.088 12.6 0.1 0.12 12.3 0.1 1.6 1 1 0 1 1 1 0 AAA domain SRPRB PF09439.5 gi|257386145|ref|YP_003175918.1| - 0.089 12.0 0.1 0.17 11.1 0.0 1.5 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit AAA_18 PF13238.1 gi|257386145|ref|YP_003175918.1| - 0.094 13.0 0.0 0.19 12.0 0.0 1.6 2 0 0 2 2 1 0 AAA domain AAA_24 PF13479.1 gi|257386145|ref|YP_003175918.1| - 0.097 12.2 0.0 0.13 11.7 0.0 1.2 1 0 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|257386145|ref|YP_003175918.1| - 0.12 11.8 0.0 0.22 10.9 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_23 PF13476.1 gi|257386145|ref|YP_003175918.1| - 0.15 12.3 0.1 0.22 11.8 0.1 1.2 1 0 0 1 1 1 0 AAA domain Septin PF00735.13 gi|257386145|ref|YP_003175918.1| - 0.18 10.8 0.0 0.23 10.4 0.0 1.1 1 0 0 1 1 1 0 Septin Rad17 PF03215.10 gi|257386145|ref|YP_003175918.1| - 0.21 10.2 0.0 0.29 9.7 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein FtsX PF02687.16 gi|257386146|ref|YP_003175919.1| - 2.5e-18 65.9 38.7 4e-10 39.4 7.0 3.7 4 0 0 4 4 4 2 FtsX-like permease family CARDB PF07705.6 gi|257386146|ref|YP_003175919.1| - 5.8e-06 26.2 1.6 5.8e-06 26.2 1.1 2.8 3 0 0 3 3 3 1 CARDB DUF824 PF05688.6 gi|257386146|ref|YP_003175919.1| - 0.074 12.7 1.2 2.8 7.6 0.0 3.1 2 0 0 2 2 2 0 Salmonella repeat of unknown function (DUF824) YtkA PF13115.1 gi|257386146|ref|YP_003175919.1| - 0.23 11.8 1.5 4.9 7.5 0.0 3.2 3 1 0 3 3 3 0 YtkA-like DUF1034 PF06280.7 gi|257386146|ref|YP_003175919.1| - 0.69 10.3 3.9 1.3 9.4 0.4 2.8 2 1 0 2 2 2 0 Fn3-like domain (DUF1034) Cadherin-like PF12733.2 gi|257386146|ref|YP_003175919.1| - 2.6 8.3 12.9 3.2 8.0 2.5 3.5 2 1 0 2 2 2 0 Cadherin-like beta sandwich domain DUF1616 PF07760.6 gi|257386147|ref|YP_003175920.1| - 3.2e-93 312.0 0.0 3.6e-93 311.8 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) DDE_Tnp_IS240 PF13610.1 gi|257386149|ref|YP_003175922.1| - 2.9e-15 56.4 0.0 3.8e-15 56.0 0.0 1.2 1 0 0 1 1 1 1 DDE domain rve PF00665.21 gi|257386149|ref|YP_003175922.1| - 1.2e-05 25.3 0.1 2.8e-05 24.1 0.1 1.6 2 0 0 2 2 2 1 Integrase core domain DDE_Tnp_IS66 PF03050.9 gi|257386149|ref|YP_003175922.1| - 0.0032 16.7 0.2 0.011 14.9 0.1 1.9 1 1 0 1 1 1 1 Transposase IS66 family TMEM71 PF15121.1 gi|257386149|ref|YP_003175922.1| - 0.023 14.4 0.2 0.042 13.5 0.1 1.4 1 0 0 1 1 1 0 TMEM71 protein family DDE_Tnp_1_2 PF13586.1 gi|257386149|ref|YP_003175922.1| - 0.028 14.5 0.6 0.69 10.1 0.1 2.8 2 1 0 2 2 2 0 Transposase DDE domain DDE_Tnp_4 PF13359.1 gi|257386149|ref|YP_003175922.1| - 0.034 13.7 0.1 0.047 13.2 0.1 1.2 1 0 0 1 1 1 0 DDE superfamily endonuclease Hydrolase PF00702.21 gi|257386149|ref|YP_003175922.1| - 0.07 13.5 0.0 0.091 13.1 0.0 1.3 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase DNA_photolyase PF00875.13 gi|257386149|ref|YP_003175922.1| - 0.076 12.7 0.1 0.1 12.3 0.1 1.2 1 0 0 1 1 1 0 DNA photolyase Glycos_transf_1 PF00534.15 gi|257386150|ref|YP_003175923.1| - 2.5e-26 92.1 0.0 3.6e-26 91.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|257386150|ref|YP_003175923.1| - 1.8e-14 54.0 0.0 3.2e-14 53.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|257386150|ref|YP_003175923.1| - 0.00084 19.1 0.1 0.013 15.3 0.1 2.5 2 0 0 2 2 2 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.1 gi|257386150|ref|YP_003175923.1| - 0.0011 19.1 0.0 0.0023 18.1 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|257386150|ref|YP_003175923.1| - 0.0044 16.7 0.0 0.0092 15.7 0.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glycos_transf_2 PF00535.21 gi|257386151|ref|YP_003175924.1| - 1.3e-29 103.0 0.1 2.4e-29 102.1 0.1 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|257386151|ref|YP_003175924.1| - 3.8e-12 46.4 0.0 5.2e-12 46.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|257386151|ref|YP_003175924.1| - 9.3e-05 21.6 0.2 0.00017 20.7 0.1 1.4 1 0 0 1 1 1 1 Glycosyltransferase like family 2 DDE_Tnp_1 PF01609.16 gi|257386152|ref|YP_003175925.1| - 1.8e-06 27.6 0.0 1.8e-06 27.6 0.0 1.1 1 0 0 1 1 1 1 Transposase DDE domain DDE_5 PF13546.1 gi|257386153|ref|YP_003175926.1| - 0.0018 17.1 0.0 0.0019 17.0 0.0 1.0 1 0 0 1 1 1 1 DDE superfamily endonuclease Glycos_transf_1 PF00534.15 gi|257386154|ref|YP_003175927.1| - 1.4e-23 83.2 0.5 2.2e-23 82.5 0.4 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|257386154|ref|YP_003175927.1| - 8.7e-14 51.8 0.0 1.3e-13 51.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|257386154|ref|YP_003175927.1| - 4.8e-09 36.3 0.0 9.2e-09 35.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Epimerase_2 PF02350.14 gi|257386154|ref|YP_003175927.1| - 2.5e-05 23.2 0.5 3.6e-05 22.7 0.3 1.2 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase Glyco_transf_4 PF13439.1 gi|257386154|ref|YP_003175927.1| - 0.0064 16.2 0.0 0.012 15.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.1 gi|257386154|ref|YP_003175927.1| - 0.07 12.9 0.2 0.19 11.5 0.0 1.9 2 0 0 2 2 2 0 Glycosyl transferase 4-like DDE_Tnp_1 PF01609.16 gi|257386156|ref|YP_003175929.1| - 4.2e-28 98.3 0.4 6.2e-28 97.7 0.3 1.3 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.7 gi|257386156|ref|YP_003175929.1| - 0.0099 14.9 0.1 0.013 14.5 0.0 1.2 1 0 0 1 1 1 1 Archaeal putative transposase ISC1217 Hepar_II_III PF07940.8 gi|257386157|ref|YP_003175930.1| - 1.5e-20 73.4 0.0 5.6e-20 71.6 0.0 2.0 3 0 0 3 3 3 1 Heparinase II/III-like protein Peptidase_S49 PF01343.13 gi|257386157|ref|YP_003175930.1| - 0.13 11.9 0.1 11 5.7 0.0 2.5 2 0 0 2 2 2 0 Peptidase family S49 Glycos_transf_1 PF00534.15 gi|257386158|ref|YP_003175931.1| - 1.2e-21 76.8 0.0 1.7e-21 76.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|257386158|ref|YP_003175931.1| - 6.4e-18 65.2 0.0 1.3e-17 64.2 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|257386158|ref|YP_003175931.1| - 3.2e-15 56.6 0.0 9.6e-15 55.0 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.1 gi|257386158|ref|YP_003175931.1| - 1.9e-08 34.4 0.0 3.8e-08 33.5 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|257386158|ref|YP_003175931.1| - 9.6e-06 25.4 0.0 3.5e-05 23.6 0.0 2.0 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Se-cys_synth_N PF12390.3 gi|257386158|ref|YP_003175931.1| - 0.0063 16.5 0.0 0.015 15.3 0.0 1.6 1 0 0 1 1 1 1 Selenocysteine synthase N terminal UDPG_MGDP_dh_N PF03721.9 gi|257386159|ref|YP_003175932.1| - 1.6e-48 164.5 0.1 3.6e-48 163.3 0.0 1.6 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.14 gi|257386159|ref|YP_003175932.1| - 7e-26 90.2 0.0 1.3e-25 89.4 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.10 gi|257386159|ref|YP_003175932.1| - 8.7e-22 77.2 0.3 3.2e-20 72.2 0.1 2.8 2 1 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_binding_2 PF03446.10 gi|257386159|ref|YP_003175932.1| - 5.5e-05 23.0 0.0 0.0003 20.6 0.0 2.2 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase TrkA_N PF02254.13 gi|257386159|ref|YP_003175932.1| - 0.00035 20.5 0.9 0.28 11.1 0.0 2.9 3 0 0 3 3 3 2 TrkA-N domain ApbA PF02558.11 gi|257386159|ref|YP_003175932.1| - 0.00055 19.4 0.1 0.0026 17.1 0.0 2.2 3 0 0 3 3 3 1 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.18 gi|257386159|ref|YP_003175932.1| - 0.0031 17.2 0.0 0.091 12.4 0.0 2.6 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2-Hacid_dh_C PF02826.14 gi|257386159|ref|YP_003175932.1| - 0.0045 16.1 0.1 0.065 12.3 0.0 2.5 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.13 gi|257386159|ref|YP_003175932.1| - 0.0061 16.2 0.0 0.012 15.2 0.0 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Epimerase_2 PF02350.14 gi|257386160|ref|YP_003175933.1| - 1.3e-112 376.0 0.1 2.5e-112 375.0 0.1 1.4 2 0 0 2 2 2 1 UDP-N-acetylglucosamine 2-epimerase Glyco_trans_4_4 PF13579.1 gi|257386160|ref|YP_003175933.1| - 1.7e-05 24.9 0.0 5.8e-05 23.2 0.0 1.9 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain DUF354 PF04007.7 gi|257386160|ref|YP_003175933.1| - 0.00032 19.7 0.0 0.00046 19.1 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF354) Glycos_transf_2 PF00535.21 gi|257386161|ref|YP_003175934.1| - 4.3e-21 75.3 0.1 1.1e-20 73.9 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|257386161|ref|YP_003175934.1| - 3.6e-09 36.7 0.8 6.3e-09 35.9 0.1 1.7 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|257386161|ref|YP_003175934.1| - 0.00023 21.4 0.7 0.00082 19.6 0.2 2.1 2 0 0 2 2 2 1 Glycosyl transferase family 2 DUF4480 PF13715.1 gi|257386163|ref|YP_003175936.1| - 0.00014 21.8 0.1 0.21 11.6 0.2 3.2 3 0 0 3 3 3 2 Domain of unknown function (DUF4480) DUF4129 PF13559.1 gi|257386163|ref|YP_003175936.1| - 0.0055 16.6 7.6 0.0055 16.6 5.3 4.0 3 1 1 4 4 4 1 Domain of unknown function (DUF4129) DUF4198 PF10670.4 gi|257386163|ref|YP_003175936.1| - 0.02 14.9 0.7 0.41 10.6 0.2 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF4198) Gram_pos_anchor PF00746.16 gi|257386163|ref|YP_003175936.1| - 0.024 14.4 0.2 0.061 13.1 0.1 1.7 1 0 0 1 1 1 0 Gram positive anchor DZR PF12773.2 gi|257386164|ref|YP_003175937.1| - 0.0043 16.8 1.1 0.01 15.6 0.8 1.6 1 1 0 1 1 1 1 Double zinc ribbon UPF0547 PF10571.4 gi|257386164|ref|YP_003175937.1| - 0.0045 16.6 0.8 0.017 14.8 0.5 1.8 1 1 0 1 1 1 1 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.1 gi|257386164|ref|YP_003175937.1| - 0.0068 15.5 0.8 1.4 8.2 0.0 2.2 2 0 0 2 2 2 2 zinc-ribbon domain DUF2387 PF09526.5 gi|257386164|ref|YP_003175937.1| - 0.015 15.2 1.0 0.019 14.8 0.7 1.1 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) zf-LITAF-like PF10601.4 gi|257386164|ref|YP_003175937.1| - 0.016 15.0 0.7 1 9.2 0.1 2.0 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain zf-RING_3 PF14369.1 gi|257386164|ref|YP_003175937.1| - 0.028 14.4 3.6 2.9 7.9 0.1 2.1 2 0 0 2 2 2 0 zinc-finger Zn_Tnp_IS1 PF03811.8 gi|257386164|ref|YP_003175937.1| - 0.035 13.6 3.4 0.25 10.8 0.2 2.1 2 0 0 2 2 2 0 InsA N-terminal domain Opy2 PF09463.5 gi|257386164|ref|YP_003175937.1| - 0.044 13.8 6.7 0.85 9.7 0.3 2.1 2 0 0 2 2 2 0 Opy2 protein DUF164 PF02591.10 gi|257386164|ref|YP_003175937.1| - 0.06 13.1 0.6 4.7 7.1 0.0 2.1 2 0 0 2 2 2 0 Putative zinc ribbon domain zf-C4_Topoisom PF01396.14 gi|257386164|ref|YP_003175937.1| - 0.095 12.2 1.5 4.8 6.7 0.1 2.1 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger OrfB_Zn_ribbon PF07282.6 gi|257386164|ref|YP_003175937.1| - 0.096 12.3 0.1 0.12 12.0 0.1 1.1 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zinc_ribbon_5 PF13719.1 gi|257386164|ref|YP_003175937.1| - 0.11 12.0 3.0 3.7 7.2 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|257386164|ref|YP_003175937.1| - 0.14 11.8 3.3 3.3 7.4 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-IS66 PF13005.2 gi|257386164|ref|YP_003175937.1| - 0.19 11.7 1.8 2.7 8.0 0.1 2.1 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 DUF2082 PF09855.4 gi|257386164|ref|YP_003175937.1| - 0.19 11.5 0.8 1 9.2 0.1 1.9 2 0 0 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) DUF329 PF03884.9 gi|257386164|ref|YP_003175937.1| - 0.23 11.0 1.7 7.2 6.2 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF329) Zn-ribbon_8 PF09723.5 gi|257386164|ref|YP_003175937.1| - 0.25 11.3 5.5 4.2 7.4 3.6 2.1 1 1 1 2 2 2 0 Zinc ribbon domain RNA_POL_M_15KD PF02150.11 gi|257386164|ref|YP_003175937.1| - 0.26 10.9 2.9 1.4 8.6 2.0 1.9 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit PhnA_Zn_Ribbon PF08274.7 gi|257386164|ref|YP_003175937.1| - 0.37 10.6 3.9 8.4 6.2 0.2 2.1 2 0 0 2 2 2 0 PhnA Zinc-Ribbon Lar_restr_allev PF14354.1 gi|257386164|ref|YP_003175937.1| - 0.39 11.0 2.5 0.61 10.4 1.7 1.4 1 1 0 1 1 1 0 Restriction alleviation protein Lar Zn_Tnp_IS1595 PF12760.2 gi|257386164|ref|YP_003175937.1| - 0.51 10.1 2.9 6.2 6.7 0.2 2.0 1 1 1 2 2 2 0 Transposase zinc-ribbon domain DNA_ligase_ZBD PF03119.11 gi|257386164|ref|YP_003175937.1| - 0.58 9.9 3.4 6.1 6.6 0.0 2.3 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zinc-ribbons_6 PF07191.7 gi|257386164|ref|YP_003175937.1| - 0.7 9.7 3.3 5 6.9 2.3 1.9 1 1 0 1 1 1 0 zinc-ribbons Rubredoxin PF00301.15 gi|257386164|ref|YP_003175937.1| - 6.5 6.7 6.1 13 5.7 0.5 2.2 1 1 1 2 2 2 0 Rubredoxin DUF58 PF01882.13 gi|257386165|ref|YP_003175938.1| - 3.7e-23 81.4 0.4 1.1e-22 79.9 0.1 2.0 2 0 0 2 2 2 1 Protein of unknown function DUF58 VWA_2 PF13519.1 gi|257386165|ref|YP_003175938.1| - 0.0019 18.3 0.7 0.0041 17.2 0.5 1.6 1 1 0 1 1 1 1 von Willebrand factor type A domain DUF1192 PF06698.6 gi|257386167|ref|YP_003175940.1| - 0.077 12.8 0.7 0.18 11.6 0.5 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1192) HALZ PF02183.13 gi|257386167|ref|YP_003175940.1| - 0.59 9.9 3.2 8.2 6.2 0.3 2.2 2 0 0 2 2 2 0 Homeobox associated leucine zipper AAA_3 PF07726.6 gi|257386168|ref|YP_003175941.1| - 6.5e-63 210.1 0.3 1.6e-62 208.8 0.1 1.7 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|257386168|ref|YP_003175941.1| - 5.1e-18 65.1 0.0 1e-17 64.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|257386168|ref|YP_003175941.1| - 2.2e-11 43.1 0.0 6.3e-11 41.6 0.0 1.6 1 1 0 1 1 1 1 MCM2/3/5 family Sigma54_activat PF00158.21 gi|257386168|ref|YP_003175941.1| - 2.9e-05 23.6 0.1 0.00016 21.1 0.0 2.0 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA PF00004.24 gi|257386168|ref|YP_003175941.1| - 0.00011 22.3 0.0 0.00023 21.3 0.0 1.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.16 gi|257386168|ref|YP_003175941.1| - 0.00015 21.0 0.2 0.12 11.4 0.0 2.2 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI RuvB_N PF05496.7 gi|257386168|ref|YP_003175941.1| - 0.00019 20.5 0.1 0.00079 18.5 0.1 2.0 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|257386168|ref|YP_003175941.1| - 0.052 13.6 0.1 0.5 10.5 0.0 2.6 3 1 0 3 3 3 0 AAA domain DUF2002 PF09400.5 gi|257386168|ref|YP_003175941.1| - 0.093 12.4 0.0 0.19 11.4 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2002) AAA_17 PF13207.1 gi|257386168|ref|YP_003175941.1| - 0.095 13.5 0.2 0.29 11.9 0.1 2.1 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|257386168|ref|YP_003175941.1| - 0.1 12.6 3.9 0.4 10.6 2.7 2.2 1 1 0 1 1 1 0 AAA ATPase domain KaiC PF06745.8 gi|257386168|ref|YP_003175941.1| - 0.14 11.2 0.0 0.26 10.3 0.0 1.4 1 0 0 1 1 1 0 KaiC DUF4350 PF14258.1 gi|257386169|ref|YP_003175942.1| - 6.3e-08 32.7 0.9 1.8e-07 31.2 0.1 2.3 2 1 0 2 2 2 1 Domain of unknown function (DUF4350) ABC_transp_aux PF09822.4 gi|257386169|ref|YP_003175942.1| - 0.00078 18.9 0.0 0.0011 18.4 0.0 1.2 1 0 0 1 1 1 1 ABC-type uncharacterized transport system Amidohydro_4 PF13147.1 gi|257386169|ref|YP_003175942.1| - 0.049 13.6 0.2 0.049 13.6 0.1 2.6 1 1 1 2 2 2 0 Amidohydrolase Imp-YgjV PF10688.4 gi|257386170|ref|YP_003175943.1| - 0.0043 16.5 2.0 0.0051 16.2 1.4 1.0 1 0 0 1 1 1 1 Bacterial inner membrane protein PMT PF02366.13 gi|257386170|ref|YP_003175943.1| - 0.036 13.4 6.5 0.041 13.2 4.5 1.1 1 0 0 1 1 1 0 Dolichyl-phosphate-mannose-protein mannosyltransferase DUF457 PF04307.9 gi|257386171|ref|YP_003175944.1| - 8.9e-11 41.3 8.9 1.1e-10 41.0 6.2 1.2 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) SelA PF03841.8 gi|257386172|ref|YP_003175945.1| - 1.1e-10 40.8 0.1 2.2e-08 33.2 0.0 3.0 3 0 0 3 3 3 1 L-seryl-tRNA selenium transferase Aminotran_5 PF00266.14 gi|257386172|ref|YP_003175945.1| - 2.2e-08 33.2 0.1 1.8e-07 30.2 0.0 1.9 2 0 0 2 2 2 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|257386172|ref|YP_003175945.1| - 2.6e-06 25.9 0.0 3.9e-06 25.3 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|257386172|ref|YP_003175945.1| - 4.9e-06 25.8 1.3 7.4e-06 25.2 0.9 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family SLA_LP_auto_ag PF05889.8 gi|257386172|ref|YP_003175945.1| - 0.00022 19.8 0.1 0.00037 19.0 0.0 1.6 2 1 0 2 2 2 1 Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) Beta_elim_lyase PF01212.16 gi|257386172|ref|YP_003175945.1| - 0.00046 19.4 0.5 0.00096 18.3 0.0 1.9 2 1 0 2 2 2 1 Beta-eliminating lyase Aminotran_1_2 PF00155.16 gi|257386172|ref|YP_003175945.1| - 0.077 11.9 0.0 18 4.1 0.0 2.9 3 0 0 3 3 3 0 Aminotransferase class I and II Glyco_hydro_20 PF00728.17 gi|257386172|ref|YP_003175945.1| - 0.14 11.3 0.0 0.23 10.5 0.0 1.3 1 0 0 1 1 1 0 Glycosyl hydrolase family 20, catalytic domain MR_MLE_C PF13378.1 gi|257386173|ref|YP_003175946.1| - 4.3e-32 110.3 0.0 7.5e-32 109.6 0.0 1.4 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.11 gi|257386173|ref|YP_003175946.1| - 1.3e-27 96.1 0.0 2.6e-27 95.1 0.0 1.5 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MR_MLE PF01188.16 gi|257386173|ref|YP_003175946.1| - 1.7e-12 47.6 0.3 4.3e-12 46.3 0.0 1.9 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Peptidase_M19 PF01244.16 gi|257386173|ref|YP_003175946.1| - 0.0032 16.4 0.0 0.0048 15.8 0.0 1.2 1 0 0 1 1 1 1 Membrane dipeptidase (Peptidase family M19) MTHFR PF02219.12 gi|257386173|ref|YP_003175946.1| - 0.17 10.9 0.0 0.24 10.4 0.0 1.1 1 0 0 1 1 1 0 Methylenetetrahydrofolate reductase IclR PF01614.13 gi|257386174|ref|YP_003175947.1| - 6.5e-23 80.8 0.4 1.4e-22 79.7 0.1 1.6 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|257386174|ref|YP_003175947.1| - 4.8e-13 48.4 0.0 1.2e-12 47.2 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|257386174|ref|YP_003175947.1| - 1.9e-08 33.7 0.0 4.8e-08 32.5 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.7 gi|257386174|ref|YP_003175947.1| - 1e-07 31.4 0.0 2e-07 30.5 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.1 gi|257386174|ref|YP_003175947.1| - 8.5e-07 28.2 0.0 2.2e-06 26.9 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|257386174|ref|YP_003175947.1| - 9.8e-07 28.3 0.0 2.6e-06 27.0 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|257386174|ref|YP_003175947.1| - 1.1e-06 28.2 0.0 2.8e-06 27.0 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain Fe_dep_repress PF01325.14 gi|257386174|ref|YP_003175947.1| - 1.4e-06 28.0 0.1 3.4e-06 26.8 0.1 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.2 gi|257386174|ref|YP_003175947.1| - 2.1e-05 24.0 0.0 5.5e-05 22.7 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_10 PF04967.7 gi|257386174|ref|YP_003175947.1| - 0.00015 21.2 0.0 0.00035 20.0 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain Rrf2 PF02082.15 gi|257386174|ref|YP_003175947.1| - 0.00021 21.3 0.0 0.00047 20.2 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator HTH_28 PF13518.1 gi|257386174|ref|YP_003175947.1| - 0.00029 20.7 0.0 0.00071 19.5 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_DeoR PF08220.7 gi|257386174|ref|YP_003175947.1| - 0.00053 19.4 0.1 0.001 18.5 0.1 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain MarR PF01047.17 gi|257386174|ref|YP_003175947.1| - 0.0015 18.1 0.0 0.0037 16.9 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_7 PF02796.10 gi|257386174|ref|YP_003175947.1| - 0.0024 17.7 0.0 0.0046 16.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase SpoIIID PF12116.3 gi|257386174|ref|YP_003175947.1| - 0.0032 17.3 0.1 0.0065 16.3 0.0 1.5 1 0 0 1 1 1 1 Stage III sporulation protein D Mga PF05043.8 gi|257386174|ref|YP_003175947.1| - 0.0034 17.6 0.0 0.0056 16.9 0.0 1.3 1 0 0 1 1 1 1 Mga helix-turn-helix domain HTH_34 PF13601.1 gi|257386174|ref|YP_003175947.1| - 0.0038 17.2 0.0 0.011 15.7 0.0 1.8 2 0 0 2 2 1 1 Winged helix DNA-binding domain HTH_40 PF14493.1 gi|257386174|ref|YP_003175947.1| - 0.0039 17.3 0.0 0.0072 16.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain FaeA PF04703.7 gi|257386174|ref|YP_003175947.1| - 0.0044 17.1 0.0 0.0088 16.1 0.0 1.4 1 0 0 1 1 1 1 FaeA-like protein LexA_DNA_bind PF01726.11 gi|257386174|ref|YP_003175947.1| - 0.0045 16.5 0.0 0.0094 15.4 0.0 1.5 1 0 0 1 1 1 1 LexA DNA binding domain HTH_23 PF13384.1 gi|257386174|ref|YP_003175947.1| - 0.0057 16.2 0.0 0.013 15.1 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain FUR PF01475.14 gi|257386174|ref|YP_003175947.1| - 0.0061 16.4 0.1 0.019 14.9 0.0 1.8 2 0 0 2 2 2 1 Ferric uptake regulator family HTH_22 PF13309.1 gi|257386174|ref|YP_003175947.1| - 0.0073 16.0 0.1 0.017 14.8 0.0 1.6 1 0 0 1 1 1 1 HTH domain HTH_45 PF14947.1 gi|257386174|ref|YP_003175947.1| - 0.0088 15.8 0.0 0.017 14.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix GntR PF00392.16 gi|257386174|ref|YP_003175947.1| - 0.0097 15.3 0.0 0.029 13.7 0.0 1.8 2 0 0 2 2 1 1 Bacterial regulatory proteins, gntR family HTH_36 PF13730.1 gi|257386174|ref|YP_003175947.1| - 0.011 15.8 0.0 0.027 14.6 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_27 PF13463.1 gi|257386174|ref|YP_003175947.1| - 0.013 15.8 0.1 0.038 14.3 0.1 1.8 1 0 0 1 1 1 0 Winged helix DNA-binding domain PadR PF03551.9 gi|257386174|ref|YP_003175947.1| - 0.017 14.8 0.2 0.042 13.6 0.0 1.8 2 0 0 2 2 1 0 Transcriptional regulator PadR-like family NUMOD1 PF07453.8 gi|257386174|ref|YP_003175947.1| - 0.022 14.6 0.0 0.052 13.4 0.0 1.6 1 0 0 1 1 1 0 NUMOD1 domain HTH_29 PF13551.1 gi|257386174|ref|YP_003175947.1| - 0.024 14.7 0.0 0.08 13.1 0.0 1.9 1 1 1 2 2 2 0 Winged helix-turn helix B-block_TFIIIC PF04182.7 gi|257386174|ref|YP_003175947.1| - 0.031 14.1 0.0 0.047 13.5 0.0 1.3 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_Crp_2 PF13545.1 gi|257386174|ref|YP_003175947.1| - 0.039 13.7 0.0 0.08 12.7 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain EAP30 PF04157.11 gi|257386174|ref|YP_003175947.1| - 0.05 12.7 0.0 0.077 12.1 0.0 1.2 1 0 0 1 1 1 0 EAP30/Vps36 family LZ_Tnp_IS481 PF13011.1 gi|257386174|ref|YP_003175947.1| - 0.053 13.8 0.0 0.12 12.7 0.0 1.6 1 0 0 1 1 1 0 leucine-zipper of insertion element IS481 HTH_Mga PF08280.6 gi|257386174|ref|YP_003175947.1| - 0.059 13.1 0.0 0.11 12.2 0.0 1.4 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain Sigma70_ECF PF07638.6 gi|257386174|ref|YP_003175947.1| - 0.061 12.9 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 ECF sigma factor IF2_N PF04760.10 gi|257386174|ref|YP_003175947.1| - 0.076 12.6 0.2 0.8 9.4 0.0 2.3 2 0 0 2 2 2 0 Translation initiation factor IF-2, N-terminal region Phage_CI_repr PF07022.8 gi|257386174|ref|YP_003175947.1| - 0.081 13.0 0.0 0.11 12.6 0.0 1.2 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain HTH_17 PF12728.2 gi|257386174|ref|YP_003175947.1| - 0.12 12.6 0.0 0.32 11.2 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain DUF4432 PF14486.1 gi|257386175|ref|YP_003175948.1| - 6.9e-26 90.4 0.0 1.6e-25 89.3 0.0 1.5 1 1 0 1 1 1 1 Domain of unknown function (DUF4432) DUF4380 PF14315.1 gi|257386175|ref|YP_003175948.1| - 0.0079 15.4 0.1 0.17 11.0 0.0 2.7 2 1 0 2 2 2 1 Domain of unknown function (DUF4380) DUF1926 PF09095.6 gi|257386175|ref|YP_003175948.1| - 0.016 14.4 0.0 0.89 8.7 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1926) Methyltransf_11 PF08241.7 gi|257386176|ref|YP_003175949.1| - 2e-07 31.3 0.1 3e-07 30.8 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|257386176|ref|YP_003175949.1| - 1.8e-05 25.2 0.4 3.2e-05 24.4 0.2 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|257386176|ref|YP_003175949.1| - 0.00017 21.9 0.1 0.00033 20.9 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|257386176|ref|YP_003175949.1| - 0.00073 19.5 4.8 0.0014 18.6 3.3 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|257386176|ref|YP_003175949.1| - 0.0011 19.3 0.1 0.0019 18.6 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|257386176|ref|YP_003175949.1| - 0.0012 18.5 0.0 0.0017 18.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ketoacyl-synt_C PF02801.17 gi|257386176|ref|YP_003175949.1| - 0.0037 17.0 0.1 0.0081 16.0 0.1 1.5 1 0 0 1 1 1 1 Beta-ketoacyl synthase, C-terminal domain RrnaAD PF00398.15 gi|257386176|ref|YP_003175949.1| - 0.017 14.1 0.0 0.022 13.8 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_24 PF13578.1 gi|257386176|ref|YP_003175949.1| - 0.043 14.6 0.5 0.087 13.6 0.4 1.5 1 0 0 1 1 1 0 Methyltransferase domain Aldo_ket_red PF00248.16 gi|257386177|ref|YP_003175950.1| - 1.3e-24 86.5 0.0 1.5e-24 86.3 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family VirB3 PF05101.8 gi|257386178|ref|YP_003175951.1| - 8.5 6.4 6.3 7.8 6.5 1.1 2.8 2 1 1 3 3 3 0 Type IV secretory pathway, VirB3-like protein TMEM213 PF15192.1 gi|257386179|ref|YP_003175952.1| - 0.33 10.9 4.9 5.5 7.0 0.1 2.4 2 0 0 2 2 2 0 TMEM213 family DctQ PF04290.7 gi|257386179|ref|YP_003175952.1| - 2.2 8.0 16.6 3.9e+03 -2.5 11.5 2.8 1 1 0 1 1 1 0 Tripartite ATP-independent periplasmic transporters, DctQ component DUF58 PF01882.13 gi|257386180|ref|YP_003175953.1| - 1.6e-18 66.6 0.2 4.5e-18 65.1 0.2 1.9 1 0 0 1 1 1 1 Protein of unknown function DUF58 DUF11 PF01345.13 gi|257386180|ref|YP_003175953.1| - 1.5e-07 31.3 1.7 1.5e-07 31.3 1.2 2.0 2 0 0 2 2 2 1 Domain of unknown function DUF11 TRAP_beta PF05753.9 gi|257386180|ref|YP_003175953.1| - 7.1e-05 22.0 0.0 0.00012 21.3 0.0 1.2 1 0 0 1 1 1 1 Translocon-associated protein beta (TRAPB) NPCBM_assoc PF10633.4 gi|257386180|ref|YP_003175953.1| - 0.00047 20.1 1.6 0.00047 20.1 1.1 2.5 3 0 0 3 3 3 1 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.6 gi|257386180|ref|YP_003175953.1| - 0.0076 16.2 0.0 0.018 15.0 0.0 1.7 1 0 0 1 1 1 1 CARDB IncA PF04156.9 gi|257386180|ref|YP_003175953.1| - 0.15 11.6 3.9 0.4 10.2 0.9 2.2 2 0 0 2 2 2 0 IncA protein DUF4231 PF14015.1 gi|257386180|ref|YP_003175953.1| - 2.9 7.8 6.0 0.63 10.0 0.7 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF4231) DUF4129 PF13559.1 gi|257386181|ref|YP_003175954.1| - 4.3e-12 45.8 7.4 1.8e-11 43.8 5.1 2.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4129) DUF3357 PF11837.3 gi|257386181|ref|YP_003175954.1| - 1.2 9.0 4.3 2.1 8.2 0.0 3.1 2 1 2 4 4 4 0 Domain of unknown function (DUF3357) DAP10 PF07213.6 gi|257386181|ref|YP_003175954.1| - 1.3 8.8 6.1 9.2 6.1 0.1 3.3 3 0 0 3 3 3 0 DAP10 membrane protein Wzy_C PF04932.10 gi|257386181|ref|YP_003175954.1| - 1.4 8.6 3.9 6 6.6 2.8 1.9 1 1 0 1 1 1 0 O-Antigen ligase FA_desaturase PF00487.19 gi|257386181|ref|YP_003175954.1| - 3.4 7.0 6.7 1.5 8.2 3.1 1.6 1 1 0 1 1 1 0 Fatty acid desaturase MerC PF03203.9 gi|257386181|ref|YP_003175954.1| - 4.9 7.5 12.0 1.5 9.1 5.3 2.1 2 1 0 2 2 2 0 MerC mercury resistance protein SNF PF00209.13 gi|257386182|ref|YP_003175955.1| - 6.1e-45 153.6 27.1 8.4e-25 87.2 7.4 2.2 2 0 0 2 2 2 2 Sodium:neurotransmitter symporter family Inositol_P PF00459.20 gi|257386183|ref|YP_003175956.1| - 3.2e-49 167.6 3.3 3.7e-49 167.4 2.3 1.0 1 0 0 1 1 1 1 Inositol monophosphatase family ABC_tran PF00005.22 gi|257386184|ref|YP_003175957.1| - 1.2e-30 106.6 0.0 2.4e-30 105.6 0.0 1.5 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|257386184|ref|YP_003175957.1| - 6.7e-16 58.3 0.2 1.4e-15 57.3 0.1 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|257386184|ref|YP_003175957.1| - 1.3e-08 35.1 0.0 9.8e-05 22.4 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.1 gi|257386184|ref|YP_003175957.1| - 0.0006 19.2 2.1 0.0055 16.1 0.0 2.9 3 0 0 3 3 3 1 AAA domain SMC_N PF02463.14 gi|257386184|ref|YP_003175957.1| - 0.00098 18.4 0.0 0.12 11.6 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|257386184|ref|YP_003175957.1| - 0.0018 18.4 0.1 0.27 11.3 0.0 3.1 3 1 1 4 4 3 1 AAA domain AAA_29 PF13555.1 gi|257386184|ref|YP_003175957.1| - 0.015 14.8 0.2 0.032 13.7 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|257386184|ref|YP_003175957.1| - 0.024 14.6 1.9 0.13 12.2 0.0 2.5 3 0 0 3 3 3 0 AAA ATPase domain cobW PF02492.14 gi|257386184|ref|YP_003175957.1| - 0.048 13.1 0.1 0.081 12.3 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain SbcCD_C PF13558.1 gi|257386184|ref|YP_003175957.1| - 0.057 13.3 0.1 0.43 10.5 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit FtsK_SpoIIIE PF01580.13 gi|257386184|ref|YP_003175957.1| - 0.061 12.7 0.0 0.13 11.7 0.0 1.5 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_18 PF13238.1 gi|257386184|ref|YP_003175957.1| - 0.12 12.7 0.0 0.31 11.3 0.0 1.8 2 0 0 2 2 1 0 AAA domain AAA_13 PF13166.1 gi|257386184|ref|YP_003175957.1| - 0.12 10.7 0.1 1.3 7.4 0.0 1.9 2 0 0 2 2 2 0 AAA domain Sigma54_activat PF00158.21 gi|257386184|ref|YP_003175957.1| - 0.14 11.6 0.1 9 5.7 0.0 2.2 2 0 0 2 2 2 0 Sigma-54 interaction domain DUF258 PF03193.11 gi|257386184|ref|YP_003175957.1| - 0.14 11.3 0.0 0.23 10.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA PF00004.24 gi|257386184|ref|YP_003175957.1| - 0.15 12.2 0.0 0.56 10.4 0.0 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.7 gi|257386184|ref|YP_003175957.1| - 0.16 11.6 0.4 0.29 10.7 0.3 1.4 1 0 0 1 1 1 0 NACHT domain UPF0079 PF02367.12 gi|257386184|ref|YP_003175957.1| - 0.2 11.2 0.3 0.35 10.4 0.2 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 ABC_tran PF00005.22 gi|257386185|ref|YP_003175958.1| - 2.5e-31 108.7 0.0 3.5e-31 108.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|257386185|ref|YP_003175958.1| - 3.1e-19 69.0 2.0 5.4e-19 68.2 1.4 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|257386185|ref|YP_003175958.1| - 4.7e-09 36.6 0.0 1.2e-06 28.7 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|257386185|ref|YP_003175958.1| - 7.7e-06 25.2 0.0 1.2e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_10 PF12846.2 gi|257386185|ref|YP_003175958.1| - 5.5e-05 22.7 0.1 0.019 14.4 0.0 2.1 1 1 1 2 2 2 2 AAA-like domain AAA_22 PF13401.1 gi|257386185|ref|YP_003175958.1| - 0.0018 18.3 0.1 0.031 14.4 0.1 2.2 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|257386185|ref|YP_003175958.1| - 0.005 16.8 1.7 0.015 15.3 1.2 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|257386185|ref|YP_003175958.1| - 0.0089 15.5 0.1 0.015 14.7 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain ATP-synt_ab PF00006.20 gi|257386185|ref|YP_003175958.1| - 0.048 13.1 0.0 0.087 12.3 0.0 1.4 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AIG1 PF04548.11 gi|257386185|ref|YP_003175958.1| - 0.11 11.5 0.8 0.18 10.8 0.6 1.3 1 0 0 1 1 1 0 AIG1 family DUF258 PF03193.11 gi|257386185|ref|YP_003175958.1| - 0.14 11.3 0.0 0.23 10.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_15 PF13175.1 gi|257386185|ref|YP_003175958.1| - 0.26 10.2 0.2 0.51 9.3 0.0 1.5 2 0 0 2 2 2 0 AAA ATPase domain BPD_transp_1 PF00528.17 gi|257386186|ref|YP_003175959.1| - 1.1e-18 67.4 6.9 1.1e-18 67.4 4.7 2.3 3 0 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|257386186|ref|YP_003175959.1| - 1.3e-06 27.6 0.0 9.2e-06 24.9 0.0 2.5 1 0 0 1 1 1 1 N-terminal TM domain of oligopeptide transport permease C DUF4131 PF13567.1 gi|257386186|ref|YP_003175959.1| - 0.052 12.9 0.1 0.052 12.9 0.1 3.2 3 1 1 4 4 4 0 Domain of unknown function (DUF4131) BPD_transp_1 PF00528.17 gi|257386187|ref|YP_003175960.1| - 1.2e-33 116.1 9.2 1.2e-33 116.1 6.4 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.17 gi|257386188|ref|YP_003175961.1| - 5.4e-61 206.4 1.0 8e-61 205.9 0.7 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle UCR_Fe-S_N PF10399.4 gi|257386188|ref|YP_003175961.1| - 0.045 12.9 0.6 0.082 12.0 0.4 1.5 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal TAT_signal PF10518.4 gi|257386188|ref|YP_003175961.1| - 0.051 13.5 3.9 0.11 12.4 2.7 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Transketolase_C PF02780.15 gi|257386189|ref|YP_003175962.1| - 0.012 15.4 0.0 0.027 14.3 0.0 1.5 1 0 0 1 1 1 0 Transketolase, C-terminal domain Metallophos_2 PF12850.2 gi|257386190|ref|YP_003175963.1| - 1.3e-12 47.8 0.0 1.9e-12 47.2 0.0 1.2 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|257386190|ref|YP_003175963.1| - 1.7e-09 37.3 0.9 2.8e-09 36.6 0.6 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.1 gi|257386190|ref|YP_003175963.1| - 0.029 13.5 0.2 0.3 10.1 0.1 2.1 1 1 0 1 1 1 0 Metallophosphoesterase, calcineurin superfamily Abhydrolase_2 PF02230.11 gi|257386191|ref|YP_003175964.1| - 0.019 14.4 0.0 0.036 13.5 0.0 1.5 1 1 1 2 2 2 0 Phospholipase/Carboxylesterase DUF2318 PF10080.4 gi|257386191|ref|YP_003175964.1| - 0.085 12.6 0.4 0.15 11.8 0.3 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) IF-2B PF01008.12 gi|257386191|ref|YP_003175964.1| - 0.095 11.6 0.1 0.12 11.2 0.0 1.1 1 0 0 1 1 1 0 Initiation factor 2 subunit family Transposase_24 PF03004.9 gi|257386191|ref|YP_003175964.1| - 0.12 12.2 0.3 0.32 10.8 0.2 1.8 1 1 0 1 1 1 0 Plant transposase (Ptta/En/Spm family) MR_MLE_C PF13378.1 gi|257386192|ref|YP_003175965.1| - 8.2e-31 106.2 0.3 2.6e-30 104.6 0.0 1.9 2 0 0 2 2 2 1 Enolase C-terminal domain-like MR_MLE_N PF02746.11 gi|257386192|ref|YP_003175965.1| - 1.6e-23 82.9 0.0 3.4e-23 81.8 0.0 1.5 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MR_MLE PF01188.16 gi|257386192|ref|YP_003175965.1| - 3.9e-09 36.9 0.4 2.4e-08 34.3 0.1 2.3 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain IclR PF01614.13 gi|257386193|ref|YP_003175966.1| - 1e-09 38.1 0.5 3.1e-09 36.6 0.3 1.8 1 1 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|257386193|ref|YP_003175966.1| - 3.1e-07 29.8 0.1 8.1e-07 28.5 0.1 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|257386193|ref|YP_003175966.1| - 3.8e-06 26.2 0.0 7.2e-06 25.2 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|257386193|ref|YP_003175966.1| - 5.4e-06 26.1 0.0 1.2e-05 24.9 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|257386193|ref|YP_003175966.1| - 0.00059 19.4 0.0 0.0011 18.6 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|257386193|ref|YP_003175966.1| - 0.00099 18.7 0.0 0.0025 17.4 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|257386193|ref|YP_003175966.1| - 0.001 18.6 0.0 0.002 17.7 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.7 gi|257386193|ref|YP_003175966.1| - 0.0023 17.5 0.0 0.0054 16.3 0.0 1.6 1 0 0 1 1 1 1 HTH domain MarR PF01047.17 gi|257386193|ref|YP_003175966.1| - 0.0065 16.1 0.0 0.013 15.2 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_36 PF13730.1 gi|257386193|ref|YP_003175966.1| - 0.026 14.6 0.0 0.049 13.7 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_45 PF14947.1 gi|257386193|ref|YP_003175966.1| - 0.026 14.3 0.0 0.077 12.8 0.0 1.7 2 0 0 2 2 2 0 Winged helix-turn-helix RP-C PF03428.8 gi|257386193|ref|YP_003175966.1| - 0.078 12.4 0.0 0.17 11.2 0.0 1.5 1 0 0 1 1 1 0 Replication protein C N-terminal domain MR_MLE_C PF13378.1 gi|257386194|ref|YP_003175967.1| - 7.9e-35 119.1 0.0 1.4e-34 118.4 0.0 1.4 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.11 gi|257386194|ref|YP_003175967.1| - 1.9e-27 95.5 0.0 3.7e-27 94.6 0.0 1.4 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MR_MLE PF01188.16 gi|257386194|ref|YP_003175967.1| - 3.2e-16 59.6 0.2 1.1e-15 57.8 0.0 2.1 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain adh_short_C2 PF13561.1 gi|257386195|ref|YP_003175968.1| - 9.9e-38 130.2 0.0 1.2e-37 130.0 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|257386195|ref|YP_003175968.1| - 4.4e-35 121.0 1.6 5.5e-35 120.7 1.1 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|257386195|ref|YP_003175968.1| - 7.8e-17 61.5 0.2 1e-16 61.1 0.1 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|257386195|ref|YP_003175968.1| - 9e-05 22.0 0.3 0.00021 20.8 0.2 1.7 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NmrA PF05368.8 gi|257386195|ref|YP_003175968.1| - 0.057 12.6 0.4 0.09 12.0 0.3 1.2 1 0 0 1 1 1 0 NmrA-like family DHH PF01368.15 gi|257386196|ref|YP_003175969.1| - 4.2e-10 39.4 0.1 7e-10 38.7 0.0 1.3 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|257386196|ref|YP_003175969.1| - 7.4e-06 25.5 0.0 2.3e-05 24.0 0.0 1.8 1 0 0 1 1 1 1 DHHA1 domain AMP-binding PF00501.23 gi|257386197|ref|YP_003175970.1| - 5.9e-87 291.7 0.1 6.9e-87 291.5 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|257386197|ref|YP_003175970.1| - 1.7e-16 60.9 0.1 4.9e-16 59.4 0.1 1.9 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain UPF0126 PF03458.8 gi|257386197|ref|YP_003175970.1| - 0.037 13.6 0.1 0.12 12.0 0.1 1.7 2 0 0 2 2 2 0 UPF0126 domain T2SE PF00437.15 gi|257386198|ref|YP_003175971.1| - 7.5e-26 90.6 0.0 1.2e-25 89.9 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_33 PF13671.1 gi|257386198|ref|YP_003175971.1| - 0.002 18.0 0.3 0.0089 15.9 0.0 2.3 3 0 0 3 3 3 1 AAA domain AAA_23 PF13476.1 gi|257386198|ref|YP_003175971.1| - 0.0021 18.4 0.0 0.0033 17.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|257386198|ref|YP_003175971.1| - 0.0026 17.9 0.2 0.018 15.2 0.0 2.5 2 2 1 3 3 3 1 AAA domain AAA_17 PF13207.1 gi|257386198|ref|YP_003175971.1| - 0.0036 18.1 0.5 0.056 14.2 0.0 3.1 2 1 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|257386198|ref|YP_003175971.1| - 0.0043 16.5 0.0 0.0091 15.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|257386198|ref|YP_003175971.1| - 0.0074 15.4 0.0 0.014 14.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 MobB PF03205.9 gi|257386198|ref|YP_003175971.1| - 0.016 14.8 0.0 0.038 13.6 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_10 PF12846.2 gi|257386198|ref|YP_003175971.1| - 0.03 13.7 0.0 0.062 12.7 0.0 1.6 2 0 0 2 2 2 0 AAA-like domain IstB_IS21 PF01695.12 gi|257386198|ref|YP_003175971.1| - 0.094 12.1 0.2 0.25 10.7 0.0 1.7 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA PF00004.24 gi|257386198|ref|YP_003175971.1| - 0.2 11.8 0.7 0.54 10.4 0.1 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) T2SF PF00482.18 gi|257386199|ref|YP_003175972.1| - 1.9e-18 66.5 2.5 1.2e-08 34.9 0.5 3.2 3 0 0 3 3 3 2 Type II secretion system (T2SS), protein F DUF1628 PF07790.6 gi|257386200|ref|YP_003175973.1| - 0.00028 21.5 0.2 0.00062 20.4 0.1 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF1628) Ureide_permease PF07168.6 gi|257386201|ref|YP_003175974.1| - 0.12 11.0 0.0 0.15 10.7 0.0 1.1 1 0 0 1 1 1 0 Ureide permease KdgT PF03812.8 gi|257386202|ref|YP_003175975.1| - 0.12 11.4 0.3 0.17 11.0 0.2 1.1 1 0 0 1 1 1 0 2-keto-3-deoxygluconate permease DUF2771 PF10969.3 gi|257386203|ref|YP_003175976.1| - 0.066 12.4 0.0 0.088 12.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2771) DUF3592 PF12158.3 gi|257386204|ref|YP_003175977.1| - 1.3e-18 67.2 0.4 1.9e-18 66.6 0.3 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3592) MarR_2 PF12802.2 gi|257386206|ref|YP_003175979.1| - 0.00029 20.4 0.1 0.00064 19.3 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|257386206|ref|YP_003175979.1| - 0.0015 18.0 0.1 0.0042 16.6 0.1 1.8 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|257386206|ref|YP_003175979.1| - 0.0051 16.5 0.3 0.014 15.2 0.2 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|257386206|ref|YP_003175979.1| - 0.0089 15.6 1.1 0.018 14.6 0.1 2.1 2 0 0 2 2 2 1 Homeodomain-like domain HTH_29 PF13551.1 gi|257386206|ref|YP_003175979.1| - 0.012 15.7 1.4 0.023 14.8 0.4 1.9 2 0 0 2 2 2 0 Winged helix-turn helix TrmB PF01978.14 gi|257386206|ref|YP_003175979.1| - 0.066 12.9 0.0 0.15 11.7 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|257386207|ref|YP_003175980.1| - 1.5e-05 24.5 0.0 1.8e-05 24.3 0.0 1.2 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.2 gi|257386207|ref|YP_003175980.1| - 8.2e-05 22.3 0.0 0.0001 22.0 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_17 PF12728.2 gi|257386207|ref|YP_003175980.1| - 0.00042 20.5 0.2 0.00096 19.3 0.0 1.8 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|257386207|ref|YP_003175980.1| - 0.0028 17.2 0.0 0.0035 16.9 0.0 1.2 1 0 0 1 1 1 1 Homeodomain-like domain HTH_Mga PF08280.6 gi|257386207|ref|YP_003175980.1| - 0.0033 17.1 0.1 0.0048 16.6 0.0 1.3 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_Crp_2 PF13545.1 gi|257386207|ref|YP_003175980.1| - 0.0063 16.2 0.0 0.0074 16.0 0.0 1.1 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Sigma70_r4 PF04545.11 gi|257386207|ref|YP_003175980.1| - 0.0078 15.5 0.0 0.013 14.7 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 SgrR_N PF12793.2 gi|257386207|ref|YP_003175980.1| - 0.022 14.7 0.0 0.024 14.6 0.0 1.1 1 0 0 1 1 1 0 Sugar transport-related sRNA regulator N-term HTH_30 PF13556.1 gi|257386207|ref|YP_003175980.1| - 0.052 13.1 0.0 0.062 12.8 0.0 1.1 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain DUF1670 PF07900.6 gi|257386207|ref|YP_003175980.1| - 0.089 11.9 0.0 0.11 11.7 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1670) MarR_2 PF12802.2 gi|257386207|ref|YP_003175980.1| - 0.12 12.0 0.0 0.16 11.6 0.0 1.2 1 0 0 1 1 1 0 MarR family HTH_7 PF02796.10 gi|257386207|ref|YP_003175980.1| - 0.12 12.2 0.0 0.18 11.7 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase CbiA PF01656.18 gi|257386209|ref|YP_003175982.1| - 6.1e-25 87.7 0.8 7.6e-25 87.4 0.5 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4_NifH PF00142.13 gi|257386209|ref|YP_003175982.1| - 1.5e-08 34.1 0.0 2.8e-05 23.4 0.0 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_31 PF13614.1 gi|257386209|ref|YP_003175982.1| - 1.2e-07 31.8 0.0 2e-07 31.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.10 gi|257386209|ref|YP_003175982.1| - 0.00017 20.7 0.3 0.0025 16.9 0.3 2.1 2 0 0 2 2 2 1 Anion-transporting ATPase MipZ PF09140.6 gi|257386209|ref|YP_003175982.1| - 0.00043 19.4 0.8 0.0012 17.9 0.6 1.7 1 1 0 1 1 1 1 ATPase MipZ AAA_25 PF13481.1 gi|257386209|ref|YP_003175982.1| - 0.00072 19.0 0.9 0.0017 17.8 0.6 1.6 1 0 0 1 1 1 1 AAA domain AAA_26 PF13500.1 gi|257386209|ref|YP_003175982.1| - 0.0033 17.0 0.3 0.017 14.7 0.2 2.2 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|257386209|ref|YP_003175982.1| - 0.0099 15.4 0.8 0.02 14.4 0.5 1.5 1 0 0 1 1 1 1 AAA domain VirC1 PF07015.6 gi|257386209|ref|YP_003175982.1| - 0.025 13.6 0.3 0.045 12.8 0.2 1.4 1 0 0 1 1 1 0 VirC1 protein PIF1 PF05970.9 gi|257386209|ref|YP_003175982.1| - 0.037 12.9 0.1 0.054 12.4 0.1 1.3 1 0 0 1 1 1 0 PIF1-like helicase Lipase_GDSL_2 PF13472.1 gi|257386209|ref|YP_003175982.1| - 0.24 11.5 5.1 0.47 10.5 1.3 2.6 1 1 0 2 2 2 0 GDSL-like Lipase/Acylhydrolase family AAA_33 PF13671.1 gi|257386209|ref|YP_003175982.1| - 0.6 9.9 3.6 7.2 6.4 2.5 2.1 1 1 0 1 1 1 0 AAA domain FG-GAP PF01839.18 gi|257386210|ref|YP_003175983.1| - 1.3e-25 88.3 72.8 3.7e-07 29.6 5.1 6.9 6 0 0 6 6 6 6 FG-GAP repeat FG-GAP_2 PF14312.1 gi|257386210|ref|YP_003175983.1| - 4.8e-17 61.6 77.6 4.5e-05 23.3 2.6 8.0 7 0 0 7 7 7 7 FG-GAP repeat PT PF04886.7 gi|257386210|ref|YP_003175983.1| - 8.8e-07 28.1 330.0 0.12 11.6 23.7 10.1 2 1 2 4 4 4 2 PT repeat VCBS PF13517.1 gi|257386210|ref|YP_003175983.1| - 3.1e-06 27.4 48.4 3.7e-05 24.0 6.1 5.2 4 1 1 5 5 5 3 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella CobA_CobO_BtuR PF02572.10 gi|257386211|ref|YP_003175984.1| - 6.2e-54 182.1 0.0 7.1e-54 182.0 0.0 1.0 1 0 0 1 1 1 1 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CbiA PF01656.18 gi|257386211|ref|YP_003175984.1| - 0.17 11.3 0.2 0.17 11.2 0.1 1.3 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain IstB_IS21 PF01695.12 gi|257386211|ref|YP_003175984.1| - 0.32 10.3 1.3 3.4 7.0 0.4 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein CbiZ PF01955.13 gi|257386212|ref|YP_003175985.1| - 2.6e-42 144.7 0.7 3.3e-42 144.4 0.5 1.1 1 0 0 1 1 1 1 Adenosylcobinamide amidohydrolase Aminotran_1_2 PF00155.16 gi|257386213|ref|YP_003175986.1| - 5.7e-28 97.8 0.0 7.9e-28 97.4 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|257386213|ref|YP_003175986.1| - 0.00032 19.8 0.7 0.00046 19.3 0.1 1.5 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|257386213|ref|YP_003175986.1| - 0.071 12.2 0.1 2.1 7.3 0.0 2.7 2 1 0 2 2 2 0 Beta-eliminating lyase ImpA-rel_N PF06812.7 gi|257386213|ref|YP_003175986.1| - 0.084 12.6 0.1 0.19 11.5 0.1 1.5 1 0 0 1 1 1 0 ImpA-related N-terminal Cys_Met_Meta_PP PF01053.15 gi|257386213|ref|YP_003175986.1| - 0.091 11.0 0.0 0.14 10.4 0.0 1.2 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme NTP_transf_3 PF12804.2 gi|257386214|ref|YP_003175987.1| - 3.4e-21 75.9 2.3 3.9e-21 75.7 1.6 1.2 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|257386214|ref|YP_003175987.1| - 0.0001 21.9 0.0 0.00024 20.7 0.0 1.6 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NTP_transferase PF00483.18 gi|257386214|ref|YP_003175987.1| - 0.00012 21.4 0.0 0.00017 20.9 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase CTP_transf_3 PF02348.14 gi|257386214|ref|YP_003175987.1| - 0.00049 19.7 0.0 0.0007 19.2 0.0 1.3 1 1 0 1 1 1 1 Cytidylyltransferase CobS PF02654.10 gi|257386215|ref|YP_003175988.1| - 1.5e-38 132.7 15.4 1.8e-38 132.4 10.6 1.0 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase CobD_Cbib PF03186.8 gi|257386216|ref|YP_003175989.1| - 1.2e-66 224.7 15.9 1.6e-66 224.4 11.0 1.1 1 0 0 1 1 1 1 CobD/Cbib protein HAD_2 PF13419.1 gi|257386217|ref|YP_003175990.1| - 2.5e-17 63.6 0.1 3.1e-17 63.3 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|257386217|ref|YP_003175990.1| - 4.8e-06 27.1 0.0 2.4e-05 24.8 0.0 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|257386217|ref|YP_003175990.1| - 1.7e-05 24.4 0.1 3.8e-05 23.3 0.1 1.7 1 0 0 1 1 1 1 HAD-hyrolase-like Aldo_ket_red PF00248.16 gi|257386218|ref|YP_003175991.1| - 7.7e-55 185.7 0.0 8.7e-55 185.5 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family Zn-ribbon_8 PF09723.5 gi|257386219|ref|YP_003175992.1| - 0.0068 16.3 2.4 0.25 11.3 1.5 2.2 1 1 0 1 1 1 1 Zinc ribbon domain DZR PF12773.2 gi|257386219|ref|YP_003175992.1| - 0.0078 16.0 0.8 0.0087 15.8 0.5 1.1 1 0 0 1 1 1 1 Double zinc ribbon zf-FPG_IleRS PF06827.9 gi|257386219|ref|YP_003175992.1| - 0.0087 15.6 0.5 1.9 8.2 0.0 2.2 2 0 0 2 2 2 2 Zinc finger found in FPG and IleRS zinc_ribbon_6 PF14599.1 gi|257386219|ref|YP_003175992.1| - 0.01 15.6 0.7 0.014 15.1 0.5 1.2 1 0 0 1 1 1 0 Zinc-ribbon HypA PF01155.14 gi|257386219|ref|YP_003175992.1| - 0.017 14.8 0.3 0.017 14.7 0.2 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Ribosomal_L37e PF01907.14 gi|257386219|ref|YP_003175992.1| - 0.019 14.7 0.3 0.021 14.5 0.2 1.2 1 0 0 1 1 1 0 Ribosomal protein L37e FYVE PF01363.16 gi|257386219|ref|YP_003175992.1| - 0.026 14.4 0.4 0.032 14.1 0.3 1.1 1 0 0 1 1 1 0 FYVE zinc finger FdhE PF04216.7 gi|257386219|ref|YP_003175992.1| - 0.04 13.6 0.7 0.04 13.6 0.5 1.0 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation zf-H2C2_2 PF13465.1 gi|257386219|ref|YP_003175992.1| - 0.057 13.7 0.3 2.6 8.5 0.0 2.1 2 0 0 2 2 2 0 Zinc-finger double domain DnaJ_CXXCXGXG PF00684.14 gi|257386219|ref|YP_003175992.1| - 0.082 12.9 0.4 0.089 12.8 0.3 1.2 1 0 0 1 1 1 0 DnaJ central domain zinc-ribbons_6 PF07191.7 gi|257386219|ref|YP_003175992.1| - 0.086 12.6 0.3 0.1 12.3 0.2 1.1 1 0 0 1 1 1 0 zinc-ribbons DUF1272 PF06906.6 gi|257386219|ref|YP_003175992.1| - 0.1 12.4 1.1 0.13 12.0 0.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) DNA_RNApol_7kD PF03604.8 gi|257386219|ref|YP_003175992.1| - 0.29 10.6 1.8 0.63 9.5 1.3 1.6 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-RING_3 PF14369.1 gi|257386219|ref|YP_003175992.1| - 0.46 10.5 4.0 4.9 7.2 0.1 2.0 1 1 1 2 2 2 0 zinc-finger zf-TFIIB PF13453.1 gi|257386219|ref|YP_003175992.1| - 1.1 8.4 3.6 0.35 10.0 0.3 1.7 1 1 1 2 2 2 0 Transcription factor zinc-finger Peptidase_S9 PF00326.16 gi|257386220|ref|YP_003175993.1| - 4.4e-47 160.0 0.0 6.4e-47 159.5 0.0 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_5 PF12695.2 gi|257386220|ref|YP_003175993.1| - 5.4e-12 45.6 0.0 1.1e-11 44.7 0.0 1.5 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|257386220|ref|YP_003175993.1| - 1.9e-07 31.2 0.1 1.5e-06 28.2 0.1 2.3 1 1 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S15 PF02129.13 gi|257386220|ref|YP_003175993.1| - 1.7e-06 27.7 0.3 0.0077 15.6 0.9 2.3 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) Peptidase_S9_N PF02897.10 gi|257386220|ref|YP_003175993.1| - 0.0041 15.7 0.0 0.0077 14.8 0.0 1.4 1 0 0 1 1 1 1 Prolyl oligopeptidase, N-terminal beta-propeller domain Pectate_lyase22 PF14583.1 gi|257386220|ref|YP_003175993.1| - 0.017 13.6 0.1 0.092 11.1 0.0 2.1 2 1 1 3 3 3 0 Oligogalacturonate lyase AXE1 PF05448.7 gi|257386220|ref|YP_003175993.1| - 0.02 13.4 0.0 0.34 9.3 0.0 2.1 2 0 0 2 2 2 0 Acetyl xylan esterase (AXE1) DPPIV_N PF00930.16 gi|257386220|ref|YP_003175993.1| - 0.047 12.2 0.0 5.6 5.4 0.0 2.5 1 1 0 2 2 2 0 Dipeptidyl peptidase IV (DPP IV) N-terminal region Peptidase_S28 PF05577.7 gi|257386220|ref|YP_003175993.1| - 0.11 11.0 0.0 0.16 10.5 0.0 1.1 1 0 0 1 1 1 0 Serine carboxypeptidase S28 Kelch_4 PF13418.1 gi|257386220|ref|YP_003175993.1| - 0.11 12.2 0.6 1.5 8.6 0.1 3.0 3 0 0 3 3 3 0 Galactose oxidase, central domain Glycos_transf_2 PF00535.21 gi|257386221|ref|YP_003175994.1| - 1.1e-19 70.7 0.2 1.7e-19 70.1 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|257386221|ref|YP_003175994.1| - 2.1e-17 63.6 3.9 1.4e-10 41.4 0.8 2.2 1 1 1 2 2 2 2 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|257386221|ref|YP_003175994.1| - 3.9e-09 36.4 3.8 8.5e-09 35.3 2.6 1.5 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_2 PF10111.4 gi|257386221|ref|YP_003175994.1| - 3.7e-05 22.9 0.0 0.0027 16.8 0.0 2.0 2 0 0 2 2 2 1 Glycosyltransferase like family 2 NTP_transf_3 PF12804.2 gi|257386221|ref|YP_003175994.1| - 0.00043 20.3 1.6 0.00058 19.9 1.1 1.4 1 1 0 1 1 1 1 MobA-like NTP transferase domain Glyco_transf_7C PF02709.9 gi|257386221|ref|YP_003175994.1| - 0.0024 17.3 0.0 0.0041 16.5 0.0 1.3 1 0 0 1 1 1 1 N-terminal domain of galactosyltransferase Glyco_tranf_2_4 PF13704.1 gi|257386221|ref|YP_003175994.1| - 0.054 13.8 0.0 0.11 12.8 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase family 2 Glyco_transf_21 PF13506.1 gi|257386221|ref|YP_003175994.1| - 0.059 12.6 0.0 0.28 10.4 0.0 1.9 2 0 0 2 2 2 0 Glycosyl transferase family 21 Glyco_tranf_2_5 PF13712.1 gi|257386221|ref|YP_003175994.1| - 0.21 10.8 0.0 0.41 9.8 0.0 1.5 1 0 0 1 1 1 0 Glycosyltransferase like family HA PF03457.9 gi|257386222|ref|YP_003175995.1| - 0.026 14.6 0.0 4.7 7.3 0.0 2.9 3 0 0 3 3 3 0 Helicase associated domain DUF4013 PF13197.1 gi|257386223|ref|YP_003175996.1| - 0.83 8.9 47.6 1.1 8.6 21.0 3.1 1 1 2 3 3 3 0 Protein of unknown function (DUF4013) BACK PF07707.10 gi|257386224|ref|YP_003175997.1| - 0.014 15.1 0.0 0.018 14.8 0.0 1.2 1 0 0 1 1 1 0 BTB And C-terminal Kelch HTH_23 PF13384.1 gi|257386224|ref|YP_003175997.1| - 1.4 8.6 5.3 18 5.1 0.1 2.4 2 1 0 2 2 2 0 Homeodomain-like domain DUF3800 PF12686.2 gi|257386225|ref|YP_003175998.1| - 0.031 13.9 0.0 0.048 13.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3800) Peripla_BP_5 PF13433.1 gi|257386225|ref|YP_003175998.1| - 0.053 12.2 0.0 0.075 11.7 0.0 1.1 1 0 0 1 1 1 0 Periplasmic binding protein domain zf-RING_3 PF14369.1 gi|257386226|ref|YP_003175999.1| - 0.11 12.4 0.1 0.11 12.4 0.1 1.8 2 0 0 2 2 2 0 zinc-finger Phage_integrase PF00589.17 gi|257386227|ref|YP_003176000.1| - 3.4e-07 30.0 0.0 6.1e-07 29.2 0.0 1.3 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.12 gi|257386227|ref|YP_003176000.1| - 2.2e-05 24.5 0.0 7.3e-05 22.8 0.0 1.9 3 0 0 3 3 3 1 Phage integrase, N-terminal SAM-like domain Atg14 PF10186.4 gi|257386228|ref|YP_003176001.1| - 0.088 11.7 0.1 0.1 11.4 0.0 1.1 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 SH3_4 PF06347.8 gi|257386228|ref|YP_003176001.1| - 0.093 12.2 0.1 0.15 11.6 0.0 1.4 1 0 0 1 1 1 0 Bacterial SH3 domain Tuberculin PF12198.3 gi|257386228|ref|YP_003176001.1| - 0.14 12.0 0.0 0.57 10.1 0.0 1.9 2 0 0 2 2 2 0 Theoretical tuberculin protein MarR_2 PF12802.2 gi|257386229|ref|YP_003176002.1| - 0.009 15.6 0.0 0.012 15.2 0.0 1.1 1 0 0 1 1 1 1 MarR family Rio2_N PF09202.6 gi|257386229|ref|YP_003176002.1| - 0.013 15.5 0.0 0.02 14.9 0.0 1.3 1 1 0 1 1 1 0 Rio2, N-terminal HTH_45 PF14947.1 gi|257386229|ref|YP_003176002.1| - 0.016 14.9 0.0 0.018 14.8 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_IclR PF09339.5 gi|257386229|ref|YP_003176002.1| - 0.045 13.3 0.0 0.066 12.8 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain Ribosomal_S19e PF01090.14 gi|257386229|ref|YP_003176002.1| - 0.071 12.5 0.0 0.071 12.5 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein S19e Tfb2 PF03849.9 gi|257386229|ref|YP_003176002.1| - 0.074 11.6 0.0 0.083 11.5 0.0 1.1 1 0 0 1 1 1 0 Transcription factor Tfb2 HTH_12 PF08461.5 gi|257386229|ref|YP_003176002.1| - 0.11 12.2 0.1 0.17 11.6 0.1 1.3 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_27 PF13463.1 gi|257386229|ref|YP_003176002.1| - 0.12 12.6 0.0 0.17 12.2 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain UPF0150 PF03681.10 gi|257386231|ref|YP_003176004.1| - 0.00042 19.8 0.3 0.00092 18.7 0.2 1.6 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0150) YcfA PF07927.7 gi|257386232|ref|YP_003176005.1| - 5.1e-12 45.5 0.2 7.4e-12 45.0 0.1 1.3 1 0 0 1 1 1 1 YcfA-like protein DZR PF12773.2 gi|257386238|ref|YP_003176011.1| - 2.2e-11 43.4 42.3 2e-06 27.5 7.4 2.1 1 1 3 4 4 4 4 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|257386238|ref|YP_003176011.1| - 2.4e-08 32.9 14.7 2.3e-05 23.4 4.1 2.4 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|257386238|ref|YP_003176011.1| - 2.6e-05 23.5 12.5 0.035 13.5 0.1 2.8 2 1 1 3 3 3 2 zinc-ribbon domain RHH_1 PF01402.16 gi|257386238|ref|YP_003176011.1| - 0.0014 18.4 5.7 0.0067 16.2 1.7 2.7 2 1 0 2 2 2 1 Ribbon-helix-helix protein, copG family Cys_rich_KTR PF14205.1 gi|257386238|ref|YP_003176011.1| - 0.0063 15.9 1.5 0.96 8.9 0.1 2.4 2 0 0 2 2 2 1 Cysteine-rich KTR Nudix_N_2 PF14803.1 gi|257386238|ref|YP_003176011.1| - 0.0098 15.5 10.6 1.2 8.8 1.3 3.7 3 1 0 3 3 3 1 Nudix N-terminal zf-NADH-PPase PF09297.6 gi|257386238|ref|YP_003176011.1| - 0.0099 15.3 9.7 0.92 9.0 0.1 3.5 3 0 0 3 3 3 2 NADH pyrophosphatase zinc ribbon domain PolC_DP2 PF03833.8 gi|257386238|ref|YP_003176011.1| - 0.015 12.9 3.7 0.02 12.5 2.6 1.1 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 DUF2191 PF09957.4 gi|257386238|ref|YP_003176011.1| - 0.037 13.8 1.0 0.12 12.2 0.7 1.9 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2191) UPF0547 PF10571.4 gi|257386238|ref|YP_003176011.1| - 0.073 12.7 8.1 3.1 7.5 0.1 2.5 2 1 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-C3HC4_3 PF13920.1 gi|257386238|ref|YP_003176011.1| - 0.21 11.3 5.9 2.5 7.8 4.1 2.1 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) DNA_ligase_ZBD PF03119.11 gi|257386238|ref|YP_003176011.1| - 0.23 11.2 3.4 7.4 6.3 0.1 2.7 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Zn_Tnp_IS91 PF14319.1 gi|257386238|ref|YP_003176011.1| - 0.43 10.1 5.0 0.87 9.1 3.5 1.6 1 0 0 1 1 1 0 Transposase zinc-binding domain Ribosomal_L32p PF01783.18 gi|257386238|ref|YP_003176011.1| - 0.98 9.6 3.9 1.4 9.1 1.3 2.2 2 1 0 2 2 2 0 Ribosomal L32p protein family zinc-ribbons_6 PF07191.7 gi|257386238|ref|YP_003176011.1| - 1.2 8.9 8.6 6.3 6.6 6.0 2.0 1 1 0 1 1 1 0 zinc-ribbons Zn-ribbon_8 PF09723.5 gi|257386238|ref|YP_003176011.1| - 1.7 8.6 10.0 16 5.5 2.8 3.3 2 1 1 3 3 3 0 Zinc ribbon domain DUF2321 PF10083.4 gi|257386238|ref|YP_003176011.1| - 2.7 7.4 4.5 1.7 8.1 1.4 1.9 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2321) NOB1_Zn_bind PF08772.6 gi|257386238|ref|YP_003176011.1| - 5.2 6.9 13.8 7.5 6.4 0.3 3.1 1 1 2 3 3 3 0 Nin one binding (NOB1) Zn-ribbon like OrfB_Zn_ribbon PF07282.6 gi|257386238|ref|YP_003176011.1| - 5.6 6.7 10.9 5.1 6.8 4.3 2.4 1 1 1 2 2 2 0 Putative transposase DNA-binding domain Prim_Zn_Ribbon PF08273.7 gi|257386238|ref|YP_003176011.1| - 8.7 6.5 20.0 1.4 9.0 7.3 2.6 1 1 1 2 2 2 0 Zinc-binding domain of primase-helicase RHH_1 PF01402.16 gi|257386239|ref|YP_003176012.1| - 4.9e-08 32.5 0.3 7.2e-08 31.9 0.2 1.3 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_2 PF03693.9 gi|257386239|ref|YP_003176012.1| - 0.0082 16.2 0.1 0.0089 16.1 0.1 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0156) Trns_repr_metal PF02583.12 gi|257386239|ref|YP_003176012.1| - 0.12 12.6 0.1 0.22 11.7 0.1 1.5 1 1 0 1 1 1 0 Metal-sensitive transcriptional repressor PSK_trans_fac PF07704.6 gi|257386239|ref|YP_003176012.1| - 0.12 13.0 0.9 0.18 12.5 0.6 1.5 1 1 0 1 1 1 0 Rv0623-like transcription factor FtsZ_C PF12327.3 gi|257386240|ref|YP_003176013.1| - 1.9e-35 120.7 0.7 1.9e-35 120.7 0.5 2.8 2 1 0 3 3 3 1 FtsZ family, C-terminal domain Tubulin PF00091.20 gi|257386240|ref|YP_003176013.1| - 3.7e-33 115.1 2.7 2.1e-32 112.7 1.9 2.1 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain ThiF PF00899.16 gi|257386240|ref|YP_003176013.1| - 0.022 14.5 0.0 0.067 13.0 0.0 1.8 1 0 0 1 1 1 0 ThiF family DUF1269 PF06897.7 gi|257386242|ref|YP_003176015.1| - 0.032 14.2 1.2 0.032 14.2 0.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1269) DUF4407 PF14362.1 gi|257386242|ref|YP_003176015.1| - 0.074 11.9 0.5 0.073 12.0 0.4 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) DUF2029 PF09594.5 gi|257386242|ref|YP_003176015.1| - 0.16 11.4 4.5 0.18 11.2 3.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2029) Trp_dioxygenase PF03301.8 gi|257386243|ref|YP_003176016.1| - 0.058 12.5 0.0 0.078 12.0 0.0 1.2 1 0 0 1 1 1 0 Tryptophan 2,3-dioxygenase KaiC PF06745.8 gi|257386243|ref|YP_003176016.1| - 0.12 11.5 0.0 0.15 11.1 0.0 1.1 1 0 0 1 1 1 0 KaiC HalX PF08663.5 gi|257386244|ref|YP_003176017.1| - 8e-07 28.9 2.6 8.7e-07 28.8 0.4 2.1 2 0 0 2 2 2 1 HalX domain Response_reg PF00072.19 gi|257386244|ref|YP_003176017.1| - 0.0012 18.7 0.6 0.24 11.4 0.4 2.3 2 0 0 2 2 2 2 Response regulator receiver domain DUF1490 PF07371.7 gi|257386244|ref|YP_003176017.1| - 0.056 13.4 0.5 0.11 12.5 0.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1490) VCBS PF13517.1 gi|257386245|ref|YP_003176018.1| - 0.029 14.7 0.2 0.31 11.4 0.0 2.1 1 1 1 2 2 2 0 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella PQQ_3 PF13570.1 gi|257386245|ref|YP_003176018.1| - 0.12 12.6 0.2 0.21 11.9 0.2 1.5 1 1 0 1 1 1 0 PQQ-like domain ATP_bind_3 PF01171.15 gi|257386246|ref|YP_003176019.1| - 3.6e-13 49.4 0.0 5.1e-13 48.9 0.0 1.3 1 0 0 1 1 1 1 PP-loop family NAD_synthase PF02540.12 gi|257386246|ref|YP_003176019.1| - 9.4e-05 21.4 0.0 0.00015 20.7 0.0 1.2 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.11 gi|257386246|ref|YP_003176019.1| - 0.00025 19.7 0.0 0.00033 19.3 0.0 1.1 1 0 0 1 1 1 1 tRNA methyl transferase PAPS_reduct PF01507.14 gi|257386246|ref|YP_003176019.1| - 0.00057 19.7 0.0 0.00087 19.1 0.0 1.2 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family DUF2392 PF10288.4 gi|257386246|ref|YP_003176019.1| - 0.0046 17.2 0.0 0.009 16.3 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF2392) Abhydrolase_6 PF12697.2 gi|257386247|ref|YP_003176020.1| - 2.2e-06 27.7 6.4 2.8e-06 27.4 4.5 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|257386247|ref|YP_003176020.1| - 1.4e-05 24.9 0.0 2e-05 24.3 0.0 1.4 1 1 0 1 1 1 1 Alpha/beta hydrolase family Ser_hydrolase PF06821.8 gi|257386247|ref|YP_003176020.1| - 0.0027 17.3 0.3 0.0041 16.7 0.2 1.2 1 0 0 1 1 1 1 Serine hydrolase DUF2332 PF10094.4 gi|257386248|ref|YP_003176021.1| - 2e-93 313.1 1.1 2.2e-93 312.9 0.8 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2332) HATPase_c PF02518.21 gi|257386249|ref|YP_003176022.1| - 2.5e-16 59.3 0.1 6.7e-16 57.9 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|257386249|ref|YP_003176022.1| - 2.6e-07 30.4 0.1 5.7e-07 29.3 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HAMP PF00672.20 gi|257386249|ref|YP_003176022.1| - 1.1e-05 25.5 1.9 3.4e-05 23.9 0.0 2.7 2 0 0 2 2 2 1 HAMP domain UPF0118 PF01594.11 gi|257386249|ref|YP_003176022.1| - 0.048 12.6 0.2 0.068 12.1 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function DUF20 HisKA PF00512.20 gi|257386249|ref|YP_003176022.1| - 0.06 13.3 0.6 0.2 11.6 0.4 1.9 1 0 0 1 1 1 0 His Kinase A (phospho-acceptor) domain CopD PF05425.8 gi|257386251|ref|YP_003176024.1| - 4e-08 33.4 13.9 4e-08 33.4 9.6 2.0 2 0 0 2 2 2 1 Copper resistance protein D TctB PF07331.6 gi|257386251|ref|YP_003176024.1| - 0.029 14.0 13.7 0.02 14.5 5.5 2.0 1 1 1 2 2 2 0 Tripartite tricarboxylate transporter TctB family Caa3_CtaG PF09678.5 gi|257386251|ref|YP_003176024.1| - 0.091 11.6 12.9 0.018 13.9 6.3 1.6 1 1 1 2 2 2 0 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) DUF2269 PF10027.4 gi|257386251|ref|YP_003176024.1| - 0.2 11.4 12.7 0.38 10.5 8.8 1.5 1 1 0 1 1 1 0 Predicted integral membrane protein (DUF2269) DUF2516 PF10724.4 gi|257386251|ref|YP_003176024.1| - 2.3 8.2 8.3 0.11 12.5 0.6 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF2516) Methyltransf_11 PF08241.7 gi|257386253|ref|YP_003176026.1| - 7.9e-16 58.3 0.5 1.3e-14 54.4 0.0 2.5 2 1 1 3 3 3 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|257386253|ref|YP_003176026.1| - 6.5e-12 45.4 0.0 1.1e-11 44.7 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|257386253|ref|YP_003176026.1| - 2.9e-11 43.1 0.0 1.2e-10 41.2 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|257386253|ref|YP_003176026.1| - 6.3e-08 32.9 0.1 2.6e-07 30.9 0.0 2.1 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|257386253|ref|YP_003176026.1| - 1.5e-07 31.9 3.1 3.1e-06 27.7 0.4 3.1 1 1 0 2 2 2 1 Methyltransferase domain MetW PF07021.7 gi|257386253|ref|YP_003176026.1| - 1.2e-06 28.0 0.0 2e-06 27.3 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_12 PF08242.7 gi|257386253|ref|YP_003176026.1| - 2.2e-06 28.0 0.0 9.4e-06 26.0 0.0 2.1 1 1 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|257386253|ref|YP_003176026.1| - 1.6e-05 24.5 0.0 2.7e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Ubie_methyltran PF01209.13 gi|257386253|ref|YP_003176026.1| - 5.2e-05 22.4 0.0 0.00028 20.0 0.0 2.0 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_8 PF05148.10 gi|257386253|ref|YP_003176026.1| - 7.7e-05 22.4 0.2 0.00011 21.8 0.1 1.2 1 0 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_26 PF13659.1 gi|257386253|ref|YP_003176026.1| - 0.00013 21.9 8.9 0.0041 17.1 6.2 2.8 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|257386253|ref|YP_003176026.1| - 0.00018 20.9 0.1 0.00056 19.3 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase small domain RrnaAD PF00398.15 gi|257386253|ref|YP_003176026.1| - 0.0012 17.9 0.0 0.0015 17.5 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_32 PF13679.1 gi|257386253|ref|YP_003176026.1| - 0.0017 18.0 0.0 0.0032 17.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|257386253|ref|YP_003176026.1| - 0.0048 16.0 0.2 0.007 15.5 0.2 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) CMAS PF02353.15 gi|257386253|ref|YP_003176026.1| - 0.029 13.4 0.0 0.044 12.8 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase FtsJ PF01728.14 gi|257386253|ref|YP_003176026.1| - 0.043 13.8 0.0 0.056 13.4 0.0 1.2 1 0 0 1 1 1 0 FtsJ-like methyltransferase Methyltransf_9 PF08003.6 gi|257386253|ref|YP_003176026.1| - 0.11 11.1 0.0 0.17 10.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) Regulator_TrmB PF11495.3 gi|257386254|ref|YP_003176027.1| - 1.1e-39 135.7 0.0 1.3e-39 135.5 0.0 1.0 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB HATPase_c PF02518.21 gi|257386255|ref|YP_003176028.1| - 5.3e-17 61.5 0.1 1e-16 60.6 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|257386255|ref|YP_003176028.1| - 4.9e-10 39.2 0.3 4.9e-10 39.2 0.2 3.0 4 0 0 4 4 4 1 His Kinase A (phospho-acceptor) domain GAF_2 PF13185.1 gi|257386255|ref|YP_003176028.1| - 1.5e-06 28.7 0.2 4.7e-06 27.1 0.2 1.9 1 0 0 1 1 1 1 GAF domain Response_reg PF00072.19 gi|257386255|ref|YP_003176028.1| - 2e-05 24.5 0.0 8.6e-05 22.5 0.0 2.1 2 0 0 2 2 2 1 Response regulator receiver domain OKR_DC_1_N PF03709.10 gi|257386255|ref|YP_003176028.1| - 0.00029 20.8 0.7 0.00081 19.4 0.0 2.2 2 1 1 3 3 3 1 Orn/Lys/Arg decarboxylase, N-terminal domain HATPase_c_2 PF13581.1 gi|257386255|ref|YP_003176028.1| - 0.012 15.3 2.7 0.013 15.3 0.0 2.2 2 0 0 2 2 2 0 Histidine kinase-like ATPase domain Abhydrolase_5 PF12695.2 gi|257386255|ref|YP_003176028.1| - 0.05 13.3 0.0 0.16 11.7 0.0 1.8 1 0 0 1 1 1 0 Alpha/beta hydrolase family HATPase_c_3 PF13589.1 gi|257386255|ref|YP_003176028.1| - 0.076 12.6 0.0 0.15 11.6 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.1 gi|257386255|ref|YP_003176028.1| - 0.1 12.3 0.0 0.29 10.8 0.0 1.8 1 1 0 1 1 1 0 GHKL domain SPOB_a PF14689.1 gi|257386255|ref|YP_003176028.1| - 0.14 11.7 0.2 0.37 10.3 0.0 1.8 2 0 0 2 2 2 0 Sensor_kinase_SpoOB-type, alpha-helical domain AP_endonuc_2 PF01261.19 gi|257386256|ref|YP_003176029.1| - 4.7e-29 101.1 4.3 5.9e-29 100.8 1.0 1.9 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel DUF1771 PF08590.5 gi|257386257|ref|YP_003176030.1| - 0.14 12.2 0.1 0.22 11.5 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1771) BPL_LplA_LipB PF03099.14 gi|257386258|ref|YP_003176031.1| - 8.2e-18 64.6 0.0 2.3e-17 63.1 0.0 1.7 2 0 0 2 2 2 1 Biotin/lipoate A/B protein ligase family Complex1_49kDa PF00346.14 gi|257386259|ref|YP_003176032.1| - 1.2e-62 211.4 0.0 8.3e-40 136.4 0.0 2.2 1 1 1 2 2 2 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.14 gi|257386259|ref|YP_003176032.1| - 2e-29 101.8 0.0 4.3e-29 100.7 0.0 1.6 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit DUF3629 PF12302.3 gi|257386259|ref|YP_003176032.1| - 0.2 11.0 0.0 0.32 10.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3629) PMSR PF01625.16 gi|257386261|ref|YP_003176034.1| - 9.3e-68 227.0 0.9 1.1e-67 226.7 0.6 1.0 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase 4HBT_2 PF13279.1 gi|257386262|ref|YP_003176035.1| - 1.3e-20 74.0 0.0 1.6e-20 73.7 0.0 1.0 1 0 0 1 1 1 1 Thioesterase-like superfamily 4HBT PF03061.17 gi|257386262|ref|YP_003176035.1| - 2.7e-17 62.6 0.2 3.8e-17 62.1 0.1 1.2 1 0 0 1 1 1 1 Thioesterase superfamily Acyl-ACP_TE PF01643.12 gi|257386262|ref|YP_003176035.1| - 6.6e-10 38.3 0.0 1.9e-07 30.3 0.1 2.0 1 1 1 2 2 2 2 Acyl-ACP thioesterase DUF3016 PF11454.3 gi|257386262|ref|YP_003176035.1| - 0.036 13.6 0.0 0.053 13.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3016) CelD_N PF02927.9 gi|257386262|ref|YP_003176035.1| - 0.12 12.6 0.0 0.23 11.7 0.0 1.3 1 0 0 1 1 1 0 N-terminal ig-like domain of cellulase HypA PF01155.14 gi|257386263|ref|YP_003176036.1| - 0.1 12.2 0.6 0.24 11.0 0.4 1.6 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family RNA_POL_M_15KD PF02150.11 gi|257386263|ref|YP_003176036.1| - 0.2 11.3 0.7 3.8 7.2 0.0 2.2 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit DUF4182 PF13790.1 gi|257386263|ref|YP_003176036.1| - 0.21 11.4 2.4 1.4 8.7 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4182) Usp PF00582.21 gi|257386265|ref|YP_003176038.1| - 6.6e-12 45.8 0.8 7.9e-12 45.5 0.6 1.1 1 0 0 1 1 1 1 Universal stress protein family AA_permease_2 PF13520.1 gi|257386266|ref|YP_003176039.1| - 1.8e-47 161.8 42.0 2.3e-47 161.4 29.1 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|257386266|ref|YP_003176039.1| - 1.5e-35 122.4 41.5 3.1e-35 121.4 28.8 1.5 1 1 0 1 1 1 1 Amino acid permease Usp PF00582.21 gi|257386266|ref|YP_003176039.1| - 1.6e-17 63.9 6.2 5.5e-11 42.8 0.2 3.0 2 1 0 2 2 2 2 Universal stress protein family Trp_Tyr_perm PF03222.8 gi|257386266|ref|YP_003176039.1| - 2.4e-07 29.9 22.5 4.7e-07 28.9 15.6 1.4 1 0 0 1 1 1 1 Tryptophan/tyrosine permease family AA_permease_C PF13906.1 gi|257386266|ref|YP_003176039.1| - 0.9 9.4 8.4 0.086 12.7 1.8 2.5 2 0 0 2 2 2 0 C-terminus of AA_permease RIO1 PF01163.17 gi|257386267|ref|YP_003176040.1| - 1.7e-48 164.5 0.1 2.3e-48 164.0 0.1 1.1 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.6 gi|257386267|ref|YP_003176040.1| - 1.6e-26 92.1 0.0 3e-26 91.2 0.0 1.5 1 0 0 1 1 1 1 Rio2, N-terminal Pkinase PF00069.20 gi|257386267|ref|YP_003176040.1| - 0.046 12.8 0.0 0.061 12.4 0.0 1.2 1 0 0 1 1 1 0 Protein kinase domain ABC_transp_aux PF09822.4 gi|257386268|ref|YP_003176041.1| - 6.4e-05 22.5 0.0 8.8e-05 22.0 0.0 1.4 1 0 0 1 1 1 1 ABC-type uncharacterized transport system DUF4350 PF14258.1 gi|257386268|ref|YP_003176041.1| - 0.0013 18.8 0.5 0.0042 17.2 0.1 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4350) ThuA PF06283.6 gi|257386268|ref|YP_003176041.1| - 0.097 12.3 0.0 0.12 12.0 0.0 1.2 1 0 0 1 1 1 0 Trehalose utilisation Peptidase_S49 PF01343.13 gi|257386269|ref|YP_003176042.1| - 1.1e-22 80.4 0.3 6.5e-12 45.4 0.0 2.2 2 0 0 2 2 2 2 Peptidase family S49 CLP_protease PF00574.18 gi|257386269|ref|YP_003176042.1| - 8.9e-10 38.5 0.0 7.4e-09 35.5 0.0 2.0 1 1 0 1 1 1 1 Clp protease ECH PF00378.15 gi|257386269|ref|YP_003176042.1| - 0.0043 16.2 0.1 1.5 7.9 0.0 2.5 1 1 0 2 2 2 2 Enoyl-CoA hydratase/isomerase family SDH_sah PF01972.11 gi|257386269|ref|YP_003176042.1| - 0.088 11.5 0.1 0.13 11.0 0.1 1.2 1 0 0 1 1 1 0 Serine dehydrogenase proteinase 2-Hacid_dh_C PF02826.14 gi|257386270|ref|YP_003176043.1| - 2.4e-55 186.4 0.0 6.5e-55 185.0 0.0 1.7 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|257386270|ref|YP_003176043.1| - 1.4e-29 102.2 0.1 1.6e-29 102.0 0.1 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain UDPG_MGDP_dh_C PF03720.10 gi|257386270|ref|YP_003176043.1| - 0.071 13.2 0.0 0.27 11.4 0.0 2.0 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Peptidase_MA_2 PF13485.1 gi|257386271|ref|YP_003176044.1| - 0.00025 21.0 0.0 0.00056 19.9 0.0 1.7 1 0 0 1 1 1 1 Peptidase MA superfamily DUF955 PF06114.8 gi|257386271|ref|YP_003176044.1| - 0.014 15.1 0.0 0.025 14.3 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF955) Peptidase_M91 PF14891.1 gi|257386271|ref|YP_003176044.1| - 0.067 13.2 0.1 0.12 12.4 0.1 1.3 1 0 0 1 1 1 0 Effector protein Peptidase_M76 PF09768.4 gi|257386271|ref|YP_003176044.1| - 0.083 12.3 0.0 0.13 11.7 0.0 1.2 1 0 0 1 1 1 0 Peptidase M76 family Peptidase_MA_2 PF13485.1 gi|257386272|ref|YP_003176045.1| - 3e-05 24.0 2.3 3e-05 24.0 0.0 2.1 2 0 0 2 2 2 1 Peptidase MA superfamily Peptidase_M76 PF09768.4 gi|257386272|ref|YP_003176045.1| - 0.00092 18.7 0.0 0.0014 18.1 0.0 1.2 1 0 0 1 1 1 1 Peptidase M76 family DUF4157 PF13699.1 gi|257386272|ref|YP_003176045.1| - 0.0043 17.1 0.1 0.012 15.7 0.1 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF4157) DUF2268 PF10026.4 gi|257386272|ref|YP_003176045.1| - 0.02 14.2 0.0 0.033 13.5 0.0 1.3 1 0 0 1 1 1 0 Predicted Zn-dependent protease (DUF2268) Pilus_CpaD PF09476.5 gi|257386272|ref|YP_003176045.1| - 0.062 12.7 0.9 1.1 8.7 0.0 2.4 2 0 0 2 2 2 0 Pilus biogenesis CpaD protein (pilus_cpaD) LPAM_1 PF08139.7 gi|257386272|ref|YP_003176045.1| - 7.9 6.8 5.5 14 6.0 3.8 1.4 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site Isochorismatase PF00857.15 gi|257386273|ref|YP_003176046.1| - 1.8e-51 174.5 0.1 2e-51 174.4 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family Peptidase_M23 PF01551.17 gi|257386274|ref|YP_003176047.1| - 0.00016 21.6 0.0 0.00056 19.8 0.0 1.8 2 0 0 2 2 2 1 Peptidase family M23 BPD_transp_1 PF00528.17 gi|257386275|ref|YP_003176048.1| - 6.7e-13 48.5 21.7 4.7e-12 45.8 12.9 2.7 2 1 1 3 3 3 2 Binding-protein-dependent transport system inner membrane component Peptidase_U4 PF03419.8 gi|257386275|ref|YP_003176048.1| - 9.8 5.1 8.2 0.92 8.5 1.2 2.1 2 0 0 2 2 2 0 Sporulation factor SpoIIGA BPD_transp_1 PF00528.17 gi|257386276|ref|YP_003176049.1| - 1.3e-15 57.4 15.7 1.3e-15 57.4 10.9 2.1 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_8 PF13416.1 gi|257386277|ref|YP_003176050.1| - 1.8e-33 116.4 2.1 2.4e-33 116.0 1.5 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|257386277|ref|YP_003176050.1| - 1.8e-20 73.8 3.4 2.8e-20 73.2 2.4 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.4 gi|257386277|ref|YP_003176050.1| - 2.3 8.4 4.9 0.38 10.8 0.1 2.3 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence ABC_tran PF00005.22 gi|257386278|ref|YP_003176051.1| - 2.4e-34 118.5 0.0 3.7e-34 117.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.5 gi|257386278|ref|YP_003176051.1| - 1.8e-11 43.8 0.4 7.1e-11 41.9 0.1 2.2 3 0 0 3 3 1 1 TOBE domain AAA_21 PF13304.1 gi|257386278|ref|YP_003176051.1| - 2.5e-07 30.9 0.0 0.0025 17.8 0.0 2.2 1 1 0 2 2 2 2 AAA domain TOBE PF03459.12 gi|257386278|ref|YP_003176051.1| - 2e-06 27.8 0.6 7.1e-06 26.0 0.0 2.3 3 0 0 3 3 2 1 TOBE domain SMC_N PF02463.14 gi|257386278|ref|YP_003176051.1| - 0.00015 21.1 0.5 0.001 18.3 0.4 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|257386278|ref|YP_003176051.1| - 0.00053 20.0 0.1 0.0017 18.4 0.0 1.9 1 1 1 2 2 2 1 AAA ATPase domain AAA_18 PF13238.1 gi|257386278|ref|YP_003176051.1| - 0.0008 19.7 0.0 0.0015 18.8 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|257386278|ref|YP_003176051.1| - 0.002 18.2 0.3 0.0051 16.9 0.2 1.8 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|257386278|ref|YP_003176051.1| - 0.0024 17.7 0.0 0.0069 16.2 0.0 1.8 2 0 0 2 2 2 1 AAA domain Rad17 PF03215.10 gi|257386278|ref|YP_003176051.1| - 0.0048 15.6 0.0 0.0062 15.2 0.0 1.2 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA_17 PF13207.1 gi|257386278|ref|YP_003176051.1| - 0.0056 17.4 0.3 0.015 16.0 0.2 2.0 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|257386278|ref|YP_003176051.1| - 0.011 14.9 0.0 0.02 14.1 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA PF00004.24 gi|257386278|ref|YP_003176051.1| - 0.018 15.2 0.0 0.07 13.3 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.1 gi|257386278|ref|YP_003176051.1| - 0.019 14.8 0.0 0.038 13.8 0.0 1.6 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.16 gi|257386278|ref|YP_003176051.1| - 0.021 13.9 0.0 0.039 13.1 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_29 PF13555.1 gi|257386278|ref|YP_003176051.1| - 0.026 14.0 0.0 0.058 12.9 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Miro PF08477.8 gi|257386278|ref|YP_003176051.1| - 0.029 14.8 0.0 0.095 13.2 0.0 1.8 2 0 0 2 2 1 0 Miro-like protein Zeta_toxin PF06414.7 gi|257386278|ref|YP_003176051.1| - 0.035 13.2 0.0 0.06 12.4 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_10 PF12846.2 gi|257386278|ref|YP_003176051.1| - 0.042 13.2 0.2 0.061 12.7 0.1 1.4 1 1 0 1 1 1 0 AAA-like domain AAA_25 PF13481.1 gi|257386278|ref|YP_003176051.1| - 0.048 13.0 0.1 0.12 11.7 0.1 1.8 1 1 0 1 1 1 0 AAA domain MobB PF03205.9 gi|257386278|ref|YP_003176051.1| - 0.074 12.7 0.0 0.2 11.3 0.0 1.8 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B NB-ARC PF00931.17 gi|257386278|ref|YP_003176051.1| - 0.17 10.7 0.0 0.32 9.7 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain Regulator_TrmB PF11495.3 gi|257386279|ref|YP_003176052.1| - 2.6e-57 193.5 0.0 3.9e-57 192.9 0.0 1.3 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.14 gi|257386279|ref|YP_003176052.1| - 3.5e-15 55.4 0.1 5.9e-15 54.7 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|257386279|ref|YP_003176052.1| - 0.00035 20.1 0.0 0.00099 18.7 0.0 1.8 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|257386279|ref|YP_003176052.1| - 0.0099 15.2 0.0 0.021 14.2 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|257386279|ref|YP_003176052.1| - 0.0099 15.4 0.0 0.024 14.2 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.17 gi|257386279|ref|YP_003176052.1| - 0.012 15.2 0.0 0.027 14.1 0.0 1.6 1 0 0 1 1 1 0 MarR family Rrf2 PF02082.15 gi|257386279|ref|YP_003176052.1| - 0.02 15.0 0.0 0.048 13.7 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator HTH_29 PF13551.1 gi|257386279|ref|YP_003176052.1| - 0.05 13.7 0.0 0.1 12.7 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn helix HTH_11 PF08279.7 gi|257386279|ref|YP_003176052.1| - 0.1 12.2 0.4 0.24 11.0 0.0 1.8 2 0 0 2 2 2 0 HTH domain SelB-wing_3 PF09107.6 gi|257386279|ref|YP_003176052.1| - 0.12 11.7 0.0 0.33 10.3 0.0 1.7 1 0 0 1 1 1 0 Elongation factor SelB, winged helix HTH_5 PF01022.15 gi|257386279|ref|YP_003176052.1| - 0.13 11.9 0.0 0.38 10.4 0.0 1.9 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family Alpha-amylase PF00128.19 gi|257386280|ref|YP_003176053.1| - 6.2e-87 291.9 0.0 8.2e-87 291.5 0.0 1.1 1 0 0 1 1 1 1 Alpha amylase, catalytic domain Alpha-amylase_N PF02903.9 gi|257386280|ref|YP_003176053.1| - 3.4e-31 107.6 0.0 6.3e-31 106.8 0.0 1.5 1 0 0 1 1 1 1 Alpha amylase, N-terminal ig-like domain DUF3459 PF11941.3 gi|257386280|ref|YP_003176053.1| - 3.1e-07 30.4 0.0 1.1e-06 28.6 0.0 2.0 1 0 0 1 1 1 1 Domain of unknown function (DUF3459) Glyco_hydro_66 PF13199.1 gi|257386280|ref|YP_003176053.1| - 0.012 14.0 0.1 0.017 13.5 0.0 1.1 1 0 0 1 1 1 0 Glycosyl hydrolase family 66 Alpha-amylase PF00128.19 gi|257386281|ref|YP_003176054.1| - 3.1e-61 207.4 5.2 4.8e-61 206.8 3.6 1.2 1 0 0 1 1 1 1 Alpha amylase, catalytic domain CBM_20 PF00686.14 gi|257386281|ref|YP_003176054.1| - 2.6e-26 91.0 0.0 5.4e-26 90.0 0.0 1.6 1 0 0 1 1 1 1 Starch binding domain TIG PF01833.19 gi|257386281|ref|YP_003176054.1| - 6.7e-11 42.0 0.9 1.7e-10 40.7 0.6 1.8 1 0 0 1 1 1 1 IPT/TIG domain Qn_am_d_aIII PF09099.5 gi|257386281|ref|YP_003176054.1| - 0.012 15.8 0.4 0.027 14.7 0.3 1.7 1 0 0 1 1 1 0 Quinohemoprotein amine dehydrogenase, alpha subunit domain III BPL_LplA_LipB PF03099.14 gi|257386282|ref|YP_003176055.1| - 0.0014 18.6 0.0 0.0021 18.0 0.0 1.3 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family Amidohydro_4 PF13147.1 gi|257386283|ref|YP_003176056.1| - 7.7e-29 101.5 19.4 9.8e-29 101.2 13.5 1.1 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_1 PF01979.15 gi|257386283|ref|YP_003176056.1| - 5.8e-19 68.9 0.0 2.7e-18 66.7 0.0 1.9 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|257386283|ref|YP_003176056.1| - 2.4e-13 49.6 0.1 2.4e-13 49.6 0.1 2.5 3 0 0 3 3 3 1 Amidohydrolase Usp PF00582.21 gi|257386283|ref|YP_003176056.1| - 0.0072 16.5 0.5 0.0072 16.5 0.3 2.4 4 0 0 4 4 4 1 Universal stress protein family Amidohydro_3 PF07969.6 gi|257386283|ref|YP_003176056.1| - 0.0097 15.1 21.1 0.92 8.6 12.1 3.1 2 1 0 2 2 2 2 Amidohydrolase family TatD_DNase PF01026.16 gi|257386283|ref|YP_003176056.1| - 0.061 12.5 0.3 0.57 9.3 0.2 2.4 1 1 0 1 1 1 0 TatD related DNase DUF2374 PF09574.5 gi|257386284|ref|YP_003176057.1| - 3.2 7.4 8.5 12 5.6 0.3 2.5 2 0 0 2 2 2 0 Protein of unknown function (Duf2374) DUF2721 PF11026.3 gi|257386285|ref|YP_003176058.1| - 0.026 14.1 0.3 0.047 13.3 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2721) HOASN PF14515.1 gi|257386285|ref|YP_003176058.1| - 0.24 11.8 1.1 0.5 10.7 0.2 1.7 2 0 0 2 2 2 0 Haem-oxygenase-associated N-terminal helices BPD_transp_1 PF00528.17 gi|257386286|ref|YP_003176059.1| - 5.4e-33 114.0 7.9 5.4e-33 114.0 5.5 1.7 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|257386286|ref|YP_003176059.1| - 0.00077 18.7 0.1 0.00077 18.7 0.1 2.1 2 0 0 2 2 2 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.17 gi|257386287|ref|YP_003176060.1| - 5.7e-39 133.5 13.2 8.6e-39 132.9 9.2 1.3 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.17 gi|257386288|ref|YP_003176061.1| - 8.8e-77 258.4 0.8 1.4e-76 257.8 0.6 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.4 gi|257386288|ref|YP_003176061.1| - 0.006 16.4 4.4 0.006 16.4 3.1 1.9 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence ABC_tran PF00005.22 gi|257386289|ref|YP_003176062.1| - 2.8e-54 183.1 0.0 8.4e-31 107.1 0.0 3.2 3 0 0 3 3 3 3 ABC transporter oligo_HPY PF08352.7 gi|257386289|ref|YP_003176062.1| - 1.9e-39 133.8 0.9 2.6e-20 72.5 0.1 2.6 2 0 0 2 2 2 2 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|257386289|ref|YP_003176062.1| - 1.1e-15 58.4 0.1 4.3e-08 33.4 0.0 3.8 3 1 0 4 4 4 2 AAA domain AAA_16 PF13191.1 gi|257386289|ref|YP_003176062.1| - 2.8e-05 24.1 0.5 0.11 12.4 0.0 3.1 3 0 0 3 3 3 2 AAA ATPase domain AAA_29 PF13555.1 gi|257386289|ref|YP_003176062.1| - 2.9e-05 23.4 1.8 0.17 11.4 0.1 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AIG1 PF04548.11 gi|257386289|ref|YP_003176062.1| - 0.0002 20.5 1.2 0.33 10.0 0.1 3.2 3 0 0 3 3 3 1 AIG1 family AAA_25 PF13481.1 gi|257386289|ref|YP_003176062.1| - 0.0037 16.6 2.5 3.3 7.0 0.0 3.9 5 0 0 5 5 5 2 AAA domain AAA_22 PF13401.1 gi|257386289|ref|YP_003176062.1| - 0.0086 16.2 4.9 0.75 9.9 0.2 3.7 3 1 0 3 3 3 1 AAA domain AAA_5 PF07728.9 gi|257386289|ref|YP_003176062.1| - 0.026 14.2 1.0 1.1 8.9 0.0 2.6 3 0 0 3 3 2 0 AAA domain (dynein-related subfamily) AAA_10 PF12846.2 gi|257386289|ref|YP_003176062.1| - 0.041 13.3 2.7 8.3 5.7 0.0 3.6 4 1 0 4 4 4 0 AAA-like domain PRK PF00485.13 gi|257386289|ref|YP_003176062.1| - 0.043 13.3 0.0 1.1 8.7 0.0 2.3 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family DUF258 PF03193.11 gi|257386289|ref|YP_003176062.1| - 0.049 12.8 0.3 4.5 6.4 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function, DUF258 Hpr_kinase_C PF07475.7 gi|257386289|ref|YP_003176062.1| - 0.049 12.9 1.1 1.3 8.2 0.1 2.3 2 0 0 2 2 2 0 HPr Serine kinase C-terminal domain DUF87 PF01935.12 gi|257386289|ref|YP_003176062.1| - 0.063 13.0 1.2 2.5 7.8 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function DUF87 ATP-synt_ab PF00006.20 gi|257386289|ref|YP_003176062.1| - 0.064 12.7 0.0 4.5 6.7 0.0 2.3 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain SbcCD_C PF13558.1 gi|257386289|ref|YP_003176062.1| - 0.13 12.2 0.2 20 5.1 0.0 3.1 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit MobB PF03205.9 gi|257386289|ref|YP_003176062.1| - 0.17 11.6 0.1 9.5 5.9 0.0 2.3 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B NB-ARC PF00931.17 gi|257386289|ref|YP_003176062.1| - 0.17 10.6 0.5 7 5.4 0.0 2.2 2 0 0 2 2 2 0 NB-ARC domain Zeta_toxin PF06414.7 gi|257386289|ref|YP_003176062.1| - 0.18 10.8 0.5 1.2 8.1 0.0 2.1 2 0 0 2 2 2 0 Zeta toxin AAA_18 PF13238.1 gi|257386289|ref|YP_003176062.1| - 0.18 12.1 0.1 4.5 7.5 0.0 2.8 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.17 gi|257386289|ref|YP_003176062.1| - 0.2 11.8 0.1 8 6.6 0.0 2.3 2 0 0 2 2 2 0 RNA helicase AAA_15 PF13175.1 gi|257386289|ref|YP_003176062.1| - 0.29 10.1 0.0 16 4.4 0.0 2.5 3 0 0 3 3 3 0 AAA ATPase domain zf-ribbon_3 PF13248.1 gi|257386291|ref|YP_003176064.1| - 0.085 12.0 0.1 0.18 11.0 0.1 1.5 1 0 0 1 1 1 0 zinc-ribbon domain Usp PF00582.21 gi|257386292|ref|YP_003176065.1| - 3.7e-19 69.3 0.3 7e-19 68.4 0.2 1.4 1 1 0 1 1 1 1 Universal stress protein family Apc5 PF12862.2 gi|257386292|ref|YP_003176065.1| - 0.093 12.5 0.0 0.14 12.0 0.0 1.3 1 0 0 1 1 1 0 Anaphase-promoting complex subunit 5 Acetyltransf_1 PF00583.19 gi|257386293|ref|YP_003176066.1| - 2.9e-19 68.8 0.0 4.7e-19 68.1 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.1 gi|257386293|ref|YP_003176066.1| - 5e-13 49.4 0.0 5.9e-13 49.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|257386293|ref|YP_003176066.1| - 5.6e-09 36.1 0.0 7e-09 35.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|257386293|ref|YP_003176066.1| - 7e-09 35.7 0.0 1.3e-08 34.8 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|257386293|ref|YP_003176066.1| - 1.5e-06 27.8 0.0 2.2e-06 27.3 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.1 gi|257386293|ref|YP_003176066.1| - 2.4e-06 27.6 0.0 3.1e-06 27.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|257386293|ref|YP_003176066.1| - 1.1e-05 25.2 0.0 0.00014 21.7 0.0 2.1 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|257386293|ref|YP_003176066.1| - 0.018 14.9 0.0 0.025 14.4 0.0 1.4 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|257386293|ref|YP_003176066.1| - 0.049 13.5 0.0 0.079 12.8 0.0 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Tox-PL PF15644.1 gi|257386293|ref|YP_003176066.1| - 0.086 13.5 0.0 0.13 13.0 0.0 1.3 1 0 0 1 1 1 0 Papain fold toxin 1 Usp PF00582.21 gi|257386294|ref|YP_003176067.1| - 3.9e-16 59.5 1.6 5.4e-16 59.0 1.1 1.1 1 0 0 1 1 1 1 Universal stress protein family Usp PF00582.21 gi|257386295|ref|YP_003176068.1| - 1.4e-35 122.5 3.6 1.6e-35 122.3 2.5 1.0 1 0 0 1 1 1 1 Universal stress protein family VWA_2 PF13519.1 gi|257386295|ref|YP_003176068.1| - 0.003 17.6 1.4 0.0041 17.2 1.0 1.4 1 1 0 1 1 1 1 von Willebrand factor type A domain Toprim PF01751.17 gi|257386295|ref|YP_003176068.1| - 0.045 13.7 0.3 3.2 7.7 0.0 2.1 1 1 1 2 2 2 0 Toprim domain ETF PF01012.16 gi|257386295|ref|YP_003176068.1| - 0.15 11.7 7.4 0.31 10.7 5.1 1.7 1 1 0 1 1 1 0 Electron transfer flavoprotein domain DHH PF01368.15 gi|257386296|ref|YP_003176069.1| - 0.0022 17.6 0.1 0.0062 16.1 0.1 1.8 2 0 0 2 2 2 1 DHH family DHHA1 PF02272.14 gi|257386296|ref|YP_003176069.1| - 0.004 16.8 0.2 0.014 15.1 0.0 1.9 2 0 0 2 2 2 1 DHHA1 domain DUF2795 PF11387.3 gi|257386296|ref|YP_003176069.1| - 0.19 11.6 1.9 28 4.6 0.1 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF2795) T2SF PF00482.18 gi|257386300|ref|YP_003176073.1| - 3.2e-13 49.6 2.7 2.7e-09 37.0 0.2 3.8 5 0 0 5 5 5 2 Type II secretion system (T2SS), protein F AAA_32 PF13654.1 gi|257386300|ref|YP_003176073.1| - 5.7e-05 21.9 0.3 8.4e-05 21.4 0.2 1.1 1 0 0 1 1 1 1 AAA domain DUF2587 PF10759.4 gi|257386300|ref|YP_003176073.1| - 0.19 11.1 0.2 7.7 5.8 0.0 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF2587) T2SE PF00437.15 gi|257386301|ref|YP_003176074.1| - 3.1e-44 150.9 0.0 5.1e-44 150.1 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein ABC_tran PF00005.22 gi|257386301|ref|YP_003176074.1| - 0.006 16.8 0.0 0.046 14.0 0.0 2.3 2 0 0 2 2 2 1 ABC transporter AAA_22 PF13401.1 gi|257386301|ref|YP_003176074.1| - 0.0063 16.6 0.0 0.016 15.3 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|257386301|ref|YP_003176074.1| - 0.012 15.5 0.0 0.051 13.5 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_29 PF13555.1 gi|257386301|ref|YP_003176074.1| - 0.018 14.5 0.3 0.039 13.4 0.0 1.7 2 0 0 2 2 2 0 P-loop containing region of AAA domain Dynamin_N PF00350.18 gi|257386301|ref|YP_003176074.1| - 0.052 13.3 0.0 0.12 12.2 0.0 1.6 1 0 0 1 1 1 0 Dynamin family FtsK_SpoIIIE PF01580.13 gi|257386301|ref|YP_003176074.1| - 0.057 12.8 0.0 0.15 11.4 0.0 1.7 2 0 0 2 2 2 0 FtsK/SpoIIIE family MobB PF03205.9 gi|257386301|ref|YP_003176074.1| - 0.06 13.0 0.0 0.13 11.9 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B KIX PF02172.11 gi|257386301|ref|YP_003176074.1| - 0.089 12.8 0.1 0.21 11.6 0.1 1.5 1 0 0 1 1 1 0 KIX domain AIG1 PF04548.11 gi|257386301|ref|YP_003176074.1| - 0.091 11.8 0.0 0.2 10.7 0.0 1.6 1 0 0 1 1 1 0 AIG1 family ABM PF03992.11 gi|257386301|ref|YP_003176074.1| - 0.13 12.3 0.4 0.75 9.8 0.1 2.4 2 0 0 2 2 2 0 Antibiotic biosynthesis monooxygenase AAA_23 PF13476.1 gi|257386301|ref|YP_003176074.1| - 0.14 12.4 2.1 0.79 10.0 0.0 2.6 3 0 0 3 3 3 0 AAA domain KaiC PF06745.8 gi|257386302|ref|YP_003176075.1| - 1.4e-14 53.7 0.1 2.5e-14 52.9 0.0 1.3 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|257386302|ref|YP_003176075.1| - 5.4e-08 32.4 0.0 7.5e-08 31.9 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|257386302|ref|YP_003176075.1| - 2.9e-05 24.3 0.0 4.8e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|257386302|ref|YP_003176075.1| - 5.3e-05 22.9 0.0 0.00044 19.9 0.0 2.1 1 1 0 1 1 1 1 NACHT domain UPF0079 PF02367.12 gi|257386302|ref|YP_003176075.1| - 6.8e-05 22.4 0.0 0.00023 20.7 0.0 2.0 1 1 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 AAA_22 PF13401.1 gi|257386302|ref|YP_003176075.1| - 0.00024 21.2 0.0 0.00041 20.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|257386302|ref|YP_003176075.1| - 0.0056 16.6 0.0 0.014 15.4 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain TIP49 PF06068.8 gi|257386302|ref|YP_003176075.1| - 0.011 14.4 0.0 1.2 7.7 0.0 2.2 2 0 0 2 2 2 0 TIP49 C-terminus Resolvase PF00239.16 gi|257386302|ref|YP_003176075.1| - 0.019 14.8 0.1 0.027 14.3 0.0 1.3 1 0 0 1 1 1 0 Resolvase, N terminal domain PRK PF00485.13 gi|257386302|ref|YP_003176075.1| - 0.11 12.1 0.0 0.22 11.0 0.0 1.5 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family Arch_flagellin PF01917.11 gi|257386303|ref|YP_003176076.1| - 4.7e-14 52.4 2.9 2.1e-13 50.3 2.0 1.8 1 1 0 1 1 1 1 Archaebacterial flagellin CARDB PF07705.6 gi|257386303|ref|YP_003176076.1| - 0.00026 21.0 0.0 0.00038 20.4 0.0 1.2 1 0 0 1 1 1 1 CARDB Arch_flagellin PF01917.11 gi|257386304|ref|YP_003176077.1| - 5.8e-08 32.5 4.4 2e-07 30.7 3.0 1.7 1 1 0 1 1 1 1 Archaebacterial flagellin DUF4097 PF13349.1 gi|257386304|ref|YP_003176077.1| - 0.031 13.8 0.1 0.055 13.0 0.1 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4097) CARDB PF07705.6 gi|257386304|ref|YP_003176077.1| - 0.031 14.3 0.4 0.047 13.7 0.3 1.4 1 1 0 1 1 1 0 CARDB Arch_fla_DE PF04659.8 gi|257386305|ref|YP_003176078.1| - 1.7e-25 88.7 0.1 3.7e-25 87.6 0.0 1.6 2 0 0 2 2 1 1 Archaeal flagella protein FlaC_arch PF05377.6 gi|257386305|ref|YP_003176078.1| - 6.3e-23 80.4 2.5 1.2e-22 79.5 1.7 1.5 1 0 0 1 1 1 1 Flagella accessory protein C (FlaC) IncA PF04156.9 gi|257386305|ref|YP_003176078.1| - 0.0024 17.4 0.0 0.0041 16.7 0.0 1.3 1 0 0 1 1 1 1 IncA protein Trypan_PARP PF05887.6 gi|257386305|ref|YP_003176078.1| - 0.0047 16.7 61.1 0.0047 16.7 42.4 3.7 3 1 1 4 4 2 1 Procyclic acidic repetitive protein (PARP) Dynamitin PF04912.9 gi|257386305|ref|YP_003176078.1| - 0.016 14.0 0.7 0.025 13.3 0.5 1.2 1 0 0 1 1 1 0 Dynamitin CENP-F_leu_zip PF10473.4 gi|257386305|ref|YP_003176078.1| - 0.021 14.6 0.8 0.035 13.9 0.5 1.2 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Tropomyosin PF00261.15 gi|257386305|ref|YP_003176078.1| - 0.035 13.1 1.2 0.057 12.5 0.8 1.3 1 0 0 1 1 1 0 Tropomyosin DUF812 PF05667.6 gi|257386305|ref|YP_003176078.1| - 0.061 11.8 0.5 0.084 11.3 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF812) APG6 PF04111.7 gi|257386305|ref|YP_003176078.1| - 0.081 11.9 0.1 0.12 11.3 0.1 1.2 1 0 0 1 1 1 0 Autophagy protein Apg6 NPV_P10 PF05531.7 gi|257386305|ref|YP_003176078.1| - 0.12 12.6 0.3 0.41 10.9 0.2 1.9 1 0 0 1 1 1 0 Nucleopolyhedrovirus P10 protein DUF904 PF06005.7 gi|257386305|ref|YP_003176078.1| - 0.13 12.5 1.7 0.25 11.6 1.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF904) Ax_dynein_light PF10211.4 gi|257386305|ref|YP_003176078.1| - 0.17 11.7 0.6 0.27 11.0 0.4 1.2 1 0 0 1 1 1 0 Axonemal dynein light chain bZIP_1 PF00170.16 gi|257386305|ref|YP_003176078.1| - 0.18 11.7 0.8 0.43 10.5 0.5 1.7 1 0 0 1 1 1 0 bZIP transcription factor TBPIP PF07106.8 gi|257386305|ref|YP_003176078.1| - 0.25 10.8 0.5 0.45 10.0 0.4 1.3 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Myosin_tail_1 PF01576.14 gi|257386305|ref|YP_003176078.1| - 1.1 6.8 6.2 0.19 9.4 0.8 1.8 2 0 0 2 2 2 0 Myosin tail bZIP_2 PF07716.10 gi|257386305|ref|YP_003176078.1| - 1.2 9.0 3.0 6.3 6.6 0.1 2.3 1 1 1 2 2 2 0 Basic region leucine zipper Med12-LCEWAV PF12145.3 gi|257386305|ref|YP_003176078.1| - 3.5 5.9 4.7 7.9 4.8 3.3 1.5 1 0 0 1 1 1 0 Eukaryotic Mediator 12 subunit domain CheD PF03975.8 gi|257386306|ref|YP_003176079.1| - 1.7e-30 105.1 0.1 2.3e-30 104.6 0.1 1.2 1 0 0 1 1 1 1 CheD chemotactic sensory transduction CheC PF04509.7 gi|257386307|ref|YP_003176080.1| - 7.7e-25 86.3 0.1 6e-11 41.8 0.0 2.9 3 0 0 3 3 3 2 CheC-like family CheX PF13690.1 gi|257386307|ref|YP_003176080.1| - 2.3e-14 53.0 0.1 1.7e-08 34.1 0.0 2.5 2 0 0 2 2 2 2 Chemotaxis phosphatase CheX Response_reg PF00072.19 gi|257386308|ref|YP_003176081.1| - 9.7e-32 109.3 0.9 1.1e-31 109.1 0.6 1.0 1 0 0 1 1 1 1 Response regulator receiver domain QRPTase_C PF01729.14 gi|257386308|ref|YP_003176081.1| - 0.1 12.1 2.8 1.5 8.3 2.2 1.9 1 1 1 2 2 2 0 Quinolinate phosphoribosyl transferase, C-terminal domain PMT_2 PF13231.1 gi|257386309|ref|YP_003176082.1| - 0.00057 19.8 11.5 0.00057 19.8 8.0 2.9 2 1 1 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase DUF2842 PF11003.3 gi|257386309|ref|YP_003176082.1| - 6.9 6.6 12.7 0.39 10.6 0.6 3.9 3 0 0 3 3 3 0 Protein of unknown function (DUF2842) PLRV_ORF5 PF01690.12 gi|257386311|ref|YP_003176084.1| - 2.5 7.1 16.0 3.4 6.6 11.1 1.1 1 0 0 1 1 1 0 Potato leaf roll virus readthrough protein Trypan_PARP PF05887.6 gi|257386311|ref|YP_003176084.1| - 6.9 6.4 18.8 14 5.4 13.0 1.5 1 1 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) Arch_flagellin PF01917.11 gi|257386312|ref|YP_003176085.1| - 6.3e-32 110.7 12.1 8.1e-32 110.3 8.4 1.2 1 0 0 1 1 1 1 Archaebacterial flagellin Arch_flagellin PF01917.11 gi|257386313|ref|YP_003176086.1| - 2.4e-31 108.8 11.4 2.9e-31 108.5 7.9 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin Arch_flagellin PF01917.11 gi|257386314|ref|YP_003176087.1| - 6.9e-32 110.6 13.4 8.4e-32 110.3 9.3 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin UMP1 PF05348.6 gi|257386314|ref|YP_003176087.1| - 0.089 12.7 0.1 0.17 11.8 0.0 1.4 1 0 0 1 1 1 0 Proteasome maturation factor UMP1 DUF2499 PF10693.4 gi|257386315|ref|YP_003176088.1| - 0.1 12.6 1.1 0.15 12.1 0.8 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2499) DUF983 PF06170.7 gi|257386315|ref|YP_003176088.1| - 0.27 11.3 1.9 0.48 10.5 1.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF983) DUF3285 PF11688.3 gi|257386315|ref|YP_003176088.1| - 3.4 7.3 5.5 3.9 7.1 0.2 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF3285) Tetraspannin PF00335.15 gi|257386315|ref|YP_003176088.1| - 3.7 6.7 5.2 4.6 6.4 3.6 1.3 1 1 0 1 1 1 0 Tetraspanin family DUF308 PF03729.8 gi|257386315|ref|YP_003176088.1| - 3.9 7.5 7.6 36 4.4 5.1 2.2 1 1 0 1 1 1 0 Short repeat of unknown function (DUF308) CopD PF05425.8 gi|257386315|ref|YP_003176088.1| - 4.2 7.6 10.1 5.5 7.2 7.0 1.3 1 1 0 1 1 1 0 Copper resistance protein D HTH_20 PF12840.2 gi|257386316|ref|YP_003176089.1| - 2.9e-10 39.7 0.0 5.2e-10 38.9 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|257386316|ref|YP_003176089.1| - 1.5e-05 24.3 0.0 2.7e-05 23.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|257386316|ref|YP_003176089.1| - 3.4e-05 23.3 0.0 6.8e-05 22.3 0.0 1.5 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_11 PF08279.7 gi|257386316|ref|YP_003176089.1| - 0.00043 19.8 0.0 0.00082 18.9 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_AsnC-type PF13404.1 gi|257386316|ref|YP_003176089.1| - 0.0011 18.4 0.0 0.003 17.0 0.0 1.8 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain TrmB PF01978.14 gi|257386316|ref|YP_003176089.1| - 0.0023 17.5 0.0 0.0038 16.8 0.0 1.5 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|257386316|ref|YP_003176089.1| - 0.003 17.1 0.1 0.0049 16.5 0.0 1.3 1 0 0 1 1 1 1 MarR family RDV-p3 PF09231.5 gi|257386316|ref|YP_003176089.1| - 0.0084 13.5 0.1 0.0086 13.5 0.1 1.0 1 0 0 1 1 1 1 Rice dwarf virus p3 HemN_C PF06969.11 gi|257386316|ref|YP_003176089.1| - 0.0091 16.0 0.0 0.015 15.3 0.0 1.4 1 0 0 1 1 1 1 HemN C-terminal domain HTH_23 PF13384.1 gi|257386316|ref|YP_003176089.1| - 0.03 13.9 0.0 0.066 12.8 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain HTH_27 PF13463.1 gi|257386316|ref|YP_003176089.1| - 0.033 14.5 0.1 0.049 13.9 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain KaiC PF06745.8 gi|257386317|ref|YP_003176090.1| - 1e-47 162.1 0.0 1.2e-47 161.9 0.0 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|257386317|ref|YP_003176090.1| - 3.1e-09 36.5 0.0 5.9e-09 35.6 0.0 1.5 1 1 1 2 2 2 1 AAA domain DUF2075 PF09848.4 gi|257386317|ref|YP_003176090.1| - 0.00082 18.4 0.0 0.00091 18.2 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_24 PF13479.1 gi|257386317|ref|YP_003176090.1| - 0.0015 18.1 0.1 0.0034 16.9 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|257386317|ref|YP_003176090.1| - 0.012 15.5 0.2 0.026 14.4 0.1 1.6 1 1 0 1 1 1 0 AAA domain Rad51 PF08423.6 gi|257386317|ref|YP_003176090.1| - 0.027 13.4 0.4 0.053 12.4 0.1 1.6 2 0 0 2 2 2 0 Rad51 DnaB_C PF03796.10 gi|257386317|ref|YP_003176090.1| - 0.068 12.0 0.0 0.084 11.7 0.0 1.2 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain CheW PF01584.14 gi|257386318|ref|YP_003176091.1| - 2.2e-27 95.1 0.6 2.6e-27 94.9 0.4 1.0 1 0 0 1 1 1 1 CheW-like domain CheB_methylest PF01339.12 gi|257386319|ref|YP_003176092.1| - 3.2e-62 209.1 0.3 5.7e-62 208.3 0.1 1.5 2 0 0 2 2 2 1 CheB methylesterase Response_reg PF00072.19 gi|257386319|ref|YP_003176092.1| - 2.9e-25 88.4 0.7 7.1e-25 87.2 0.5 1.6 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.21 gi|257386320|ref|YP_003176093.1| - 4.1e-23 81.2 0.6 1.7e-22 79.2 0.1 2.3 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CheW PF01584.14 gi|257386320|ref|YP_003176093.1| - 1.8e-20 72.8 0.3 5.1e-20 71.3 0.2 1.8 1 0 0 1 1 1 1 CheW-like domain Hpt PF01627.18 gi|257386320|ref|YP_003176093.1| - 5.2e-20 71.2 0.1 5.2e-20 71.2 0.0 2.4 3 1 0 3 3 3 1 Hpt domain P2 PF07194.6 gi|257386320|ref|YP_003176093.1| - 6e-10 38.8 0.0 2.1e-09 37.0 0.0 1.9 1 0 0 1 1 1 1 P2 response regulator binding domain H-kinase_dim PF02895.9 gi|257386320|ref|YP_003176093.1| - 1.4e-08 34.9 3.6 1.4e-08 34.9 2.5 2.5 2 1 0 2 2 2 1 Signal transducing histidine kinase, homodimeric domain HATPase_c_2 PF13581.1 gi|257386320|ref|YP_003176093.1| - 0.0041 16.9 0.1 0.012 15.4 0.1 1.8 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.1 gi|257386320|ref|YP_003176093.1| - 0.014 15.0 0.1 0.063 12.9 0.0 2.1 2 0 0 2 2 2 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CheR PF01739.13 gi|257386321|ref|YP_003176094.1| - 4.6e-49 166.3 0.0 5.7e-49 166.0 0.0 1.1 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain CheR_N PF03705.10 gi|257386321|ref|YP_003176094.1| - 8.8e-09 34.6 1.9 8.8e-09 34.6 1.3 2.2 2 0 0 2 2 2 1 CheR methyltransferase, all-alpha domain Methyltransf_12 PF08242.7 gi|257386321|ref|YP_003176094.1| - 7.2e-05 23.1 0.0 0.0017 18.8 0.0 2.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|257386321|ref|YP_003176094.1| - 7.5e-05 23.2 0.0 0.00015 22.3 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|257386321|ref|YP_003176094.1| - 0.00035 20.1 0.0 0.018 14.6 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|257386321|ref|YP_003176094.1| - 0.004 17.6 0.0 0.064 13.7 0.0 2.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|257386321|ref|YP_003176094.1| - 0.013 15.8 0.0 0.04 14.2 0.0 1.8 1 1 0 1 1 1 0 Methyltransferase domain HEAT_2 PF13646.1 gi|257386322|ref|YP_003176095.1| - 1.4e-86 284.9 39.4 2.8e-20 72.3 0.9 5.7 1 1 7 8 8 8 8 HEAT repeats HEAT PF02985.17 gi|257386322|ref|YP_003176095.1| - 6.8e-31 103.5 7.8 0.015 15.3 0.0 10.8 11 1 1 12 12 12 7 HEAT repeat HEAT_EZ PF13513.1 gi|257386322|ref|YP_003176095.1| - 1e-25 89.4 18.2 0.00054 20.3 0.2 9.6 9 2 1 10 10 10 7 HEAT-like repeat HEAT_PBS PF03130.11 gi|257386322|ref|YP_003176095.1| - 4.3e-21 73.2 17.4 0.00026 21.1 0.3 9.5 9 1 0 9 9 9 4 PBS lyase HEAT-like repeat Arm PF00514.18 gi|257386322|ref|YP_003176095.1| - 9.8e-11 41.0 0.2 0.033 14.0 0.0 8.2 10 0 0 10 10 10 2 Armadillo/beta-catenin-like repeat Adaptin_N PF01602.15 gi|257386322|ref|YP_003176095.1| - 1.1e-08 33.9 0.2 0.00015 20.2 0.2 4.2 2 1 2 4 4 4 2 Adaptin N terminal region Cnd1 PF12717.2 gi|257386322|ref|YP_003176095.1| - 1.1e-05 25.3 0.5 0.071 12.9 0.0 5.6 3 1 0 4 4 4 1 non-SMC mitotic condensation complex subunit 1 ERAP1_C PF11838.3 gi|257386322|ref|YP_003176095.1| - 7.8e-05 22.0 4.0 0.36 10.0 0.3 3.6 2 1 1 3 3 3 2 ERAP1-like C-terminal domain Aconitase_B_N PF11791.3 gi|257386322|ref|YP_003176095.1| - 0.00052 19.8 0.6 0.098 12.4 0.0 3.4 3 2 0 3 3 3 1 Aconitate B N-terminal domain DUF2019 PF09450.5 gi|257386322|ref|YP_003176095.1| - 0.0039 17.0 1.8 4.6 7.1 0.0 3.9 3 1 1 4 4 4 1 Domain of unknown function (DUF2019) PI3Ka PF00613.15 gi|257386322|ref|YP_003176095.1| - 0.029 13.5 0.0 15 4.6 0.0 3.1 3 0 0 3 3 3 0 Phosphoinositide 3-kinase family, accessory domain (PIK domain) Imm16 PF15565.1 gi|257386322|ref|YP_003176095.1| - 0.08 12.8 5.0 0.54 10.1 0.1 3.4 2 1 1 3 3 3 0 Immunity protein 16 ThylakoidFormat PF11264.3 gi|257386322|ref|YP_003176095.1| - 0.094 12.3 0.0 5.6 6.5 0.0 2.7 3 0 0 3 3 3 0 Thylakoid formation protein Cohesin_HEAT PF12765.2 gi|257386322|ref|YP_003176095.1| - 2.1 8.3 5.4 41 4.2 0.0 4.2 4 0 0 4 4 4 0 HEAT repeat associated with sister chromatid cohesion CheF-arch PF04283.7 gi|257386323|ref|YP_003176096.1| - 3.7e-61 206.1 4.3 4.7e-61 205.8 3.0 1.1 1 0 0 1 1 1 1 Chemotaxis signal transduction system protein F from archaea bPH_4 PF06713.6 gi|257386323|ref|YP_003176096.1| - 0.0015 18.3 0.1 0.0028 17.4 0.1 1.4 1 0 0 1 1 1 1 Bacterial PH domain bPH_5 PF10882.3 gi|257386323|ref|YP_003176096.1| - 0.0072 16.0 0.1 0.5 10.1 0.1 2.4 1 1 1 2 2 2 1 Bacterial PH domain Vps36_ESCRT-II PF11605.3 gi|257386323|ref|YP_003176096.1| - 0.021 14.6 0.0 0.051 13.3 0.0 1.6 1 0 0 1 1 1 0 Vacuolar protein sorting protein 36 Vps36 bPH_3 PF14470.1 gi|257386323|ref|YP_003176096.1| - 0.056 13.7 0.0 0.11 12.8 0.0 1.5 1 0 0 1 1 1 0 Bacterial PH domain CheF-arch PF04283.7 gi|257386324|ref|YP_003176097.1| - 1.1e-55 188.2 0.1 1.4e-55 187.9 0.0 1.1 1 0 0 1 1 1 1 Chemotaxis signal transduction system protein F from archaea MarR PF01047.17 gi|257386324|ref|YP_003176097.1| - 0.00016 21.3 0.0 0.00033 20.3 0.0 1.5 1 0 0 1 1 1 1 MarR family GRAM PF02893.15 gi|257386324|ref|YP_003176097.1| - 0.00019 20.8 0.0 0.012 15.1 0.0 2.5 2 0 0 2 2 2 1 GRAM domain MarR_2 PF12802.2 gi|257386324|ref|YP_003176097.1| - 0.00042 19.9 0.0 0.0019 17.8 0.0 2.0 2 0 0 2 2 2 1 MarR family TrmB PF01978.14 gi|257386324|ref|YP_003176097.1| - 0.007 16.0 0.0 0.013 15.2 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|257386324|ref|YP_003176097.1| - 0.048 13.0 0.0 0.092 12.1 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Ribosomal_S19e PF01090.14 gi|257386324|ref|YP_003176097.1| - 0.13 11.7 0.0 0.23 10.9 0.0 1.4 1 0 0 1 1 1 0 Ribosomal protein S19e ImpE PF07024.8 gi|257386325|ref|YP_003176098.1| - 0.14 12.0 0.5 12 5.9 0.0 2.4 3 0 0 3 3 3 0 ImpE protein Ribosomal_S6e PF01092.14 gi|257386326|ref|YP_003176099.1| - 6.7e-44 148.5 0.8 7.7e-44 148.4 0.5 1.0 1 0 0 1 1 1 1 Ribosomal protein S6e Peptidase_M29 PF02073.10 gi|257386328|ref|YP_003176101.1| - 4.1e-109 364.9 0.0 4.6e-109 364.8 0.0 1.0 1 0 0 1 1 1 1 Thermophilic metalloprotease (M29) DUF4388 PF14332.1 gi|257386328|ref|YP_003176101.1| - 0.068 13.0 0.0 0.2 11.5 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4388) GFO_IDH_MocA PF01408.17 gi|257386329|ref|YP_003176102.1| - 2.8e-23 82.6 0.1 8.1e-23 81.2 0.0 1.8 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|257386329|ref|YP_003176102.1| - 8.1e-07 28.8 0.0 1.7e-06 27.8 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain MCPsignal PF00015.16 gi|257386330|ref|YP_003176103.1| - 2.4e-51 174.2 72.4 3.6e-48 163.9 27.8 4.7 3 2 1 4 4 4 3 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.20 gi|257386330|ref|YP_003176103.1| - 3.9e-15 55.7 0.3 3.9e-15 55.7 0.2 6.5 3 1 3 6 6 6 2 HAMP domain Cache_1 PF02743.13 gi|257386330|ref|YP_003176103.1| - 1.1e-14 53.7 0.2 1.9e-10 40.1 0.0 2.9 2 0 0 2 2 2 2 Cache domain DUF948 PF06103.6 gi|257386330|ref|YP_003176103.1| - 0.33 10.8 23.3 0.16 11.8 1.1 6.1 4 2 2 6 6 6 0 Bacterial protein of unknown function (DUF948) Cache_2 PF08269.6 gi|257386330|ref|YP_003176103.1| - 0.66 9.9 0.0 0.66 9.9 0.0 6.7 6 1 1 8 8 8 0 Cache domain DUF1395 PF07160.7 gi|257386330|ref|YP_003176103.1| - 2.5 7.5 10.7 1.7 8.0 1.9 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1395) Mod_r PF07200.8 gi|257386330|ref|YP_003176103.1| - 2.9 7.7 21.7 0.42 10.5 0.5 5.3 5 2 0 5 5 5 0 Modifier of rudimentary (Mod(r)) protein TMP_2 PF06791.8 gi|257386330|ref|YP_003176103.1| - 6.5 6.3 42.1 3.7 7.1 8.5 4.9 2 2 2 4 4 4 0 Prophage tail length tape measure protein QRPTase_C PF01729.14 gi|257386331|ref|YP_003176104.1| - 2.9e-12 46.4 0.0 4e-12 45.9 0.0 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.11 gi|257386331|ref|YP_003176104.1| - 1.9e-06 27.5 0.0 5.2e-06 26.1 0.0 1.7 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain Aldo_ket_red PF00248.16 gi|257386334|ref|YP_003176107.1| - 5.2e-66 222.3 0.0 5.9e-66 222.1 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family DUF4509 PF14970.1 gi|257386334|ref|YP_003176107.1| - 0.11 12.0 0.0 0.21 11.2 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4509) CarboxypepD_reg PF13620.1 gi|257386336|ref|YP_003176109.1| - 2.4e-18 65.9 34.6 1.6e-07 31.2 0.9 4.4 4 0 0 4 4 4 4 Carboxypeptidase regulatory-like domain DUF4480 PF13715.1 gi|257386336|ref|YP_003176109.1| - 6.5e-09 35.7 11.7 0.00014 21.8 0.8 4.2 4 0 0 4 4 4 2 Domain of unknown function (DUF4480) PEGA PF08308.6 gi|257386336|ref|YP_003176109.1| - 5.7e-06 26.0 7.8 0.081 12.7 0.2 4.2 4 0 0 4 4 4 2 PEGA domain BiPBP_C PF06832.7 gi|257386336|ref|YP_003176109.1| - 2.5e-05 24.0 5.6 0.025 14.5 0.1 4.7 4 1 0 4 4 4 1 Penicillin-Binding Protein C-terminus Family Cna_B PF05738.8 gi|257386336|ref|YP_003176109.1| - 0.00025 20.7 11.5 0.02 14.6 0.1 4.7 4 2 0 4 4 4 2 Cna protein B-type domain DUF824 PF05688.6 gi|257386336|ref|YP_003176109.1| - 0.0017 17.9 8.2 0.015 14.9 0.0 4.0 5 0 0 5 5 5 1 Salmonella repeat of unknown function (DUF824) fn3_3 PF14686.1 gi|257386336|ref|YP_003176109.1| - 0.098 12.7 2.9 0.12 12.4 0.0 2.7 3 1 0 3 3 3 0 Polysaccharide lyase family 4, domain II DUF4198 PF10670.4 gi|257386336|ref|YP_003176109.1| - 0.099 12.6 11.2 0.43 10.5 0.3 3.4 3 1 0 4 4 4 0 Domain of unknown function (DUF4198) SoxE PF06525.6 gi|257386336|ref|YP_003176109.1| - 0.16 11.1 0.0 0.16 11.1 0.0 3.0 3 0 0 3 3 3 0 Sulfocyanin (SoxE) A2M_N_2 PF07703.9 gi|257386336|ref|YP_003176109.1| - 0.74 9.6 7.8 1.5 8.6 4.0 2.6 2 1 0 2 2 2 0 Alpha-2-macroglobulin family N-terminal region GCV_T PF01571.16 gi|257386337|ref|YP_003176110.1| - 3.1e-42 144.3 0.0 6.5e-42 143.2 0.0 1.4 2 0 0 2 2 2 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.6 gi|257386337|ref|YP_003176110.1| - 3.3e-16 59.0 0.6 6.6e-16 58.1 0.0 1.8 2 0 0 2 2 2 1 Glycine cleavage T-protein C-terminal barrel domain PIN PF01850.16 gi|257386338|ref|YP_003176111.1| - 7.4e-16 58.5 0.2 8.4e-16 58.4 0.1 1.0 1 0 0 1 1 1 1 PIN domain DUF217 PF02697.9 gi|257386339|ref|YP_003176112.1| - 3.1e-14 52.9 0.0 3.3e-14 52.8 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized ACR, COG1753 FAD_binding_3 PF01494.14 gi|257386340|ref|YP_003176113.1| - 7.5e-14 51.5 1.6 5.6e-10 38.8 0.0 3.1 3 0 0 3 3 3 3 FAD binding domain DAO PF01266.19 gi|257386340|ref|YP_003176113.1| - 8.3e-10 38.0 1.6 0.00031 19.7 0.0 2.3 1 1 1 2 2 2 2 FAD dependent oxidoreductase Lycopene_cycl PF05834.7 gi|257386340|ref|YP_003176113.1| - 3e-08 32.9 0.1 1.7e-05 23.8 0.1 2.5 2 1 0 2 2 2 1 Lycopene cyclase protein FAD_oxidored PF12831.2 gi|257386340|ref|YP_003176113.1| - 1.8e-05 24.0 0.2 3.2e-05 23.2 0.1 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|257386340|ref|YP_003176113.1| - 4.1e-05 23.5 0.0 7.6e-05 22.6 0.0 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|257386340|ref|YP_003176113.1| - 0.00038 19.0 0.0 0.0035 15.8 0.0 1.9 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_2 PF00890.19 gi|257386340|ref|YP_003176113.1| - 0.00038 19.4 2.7 0.0097 14.7 0.2 2.3 1 1 0 2 2 2 2 FAD binding domain NAD_binding_8 PF13450.1 gi|257386340|ref|YP_003176113.1| - 0.00088 19.2 0.7 0.0037 17.2 0.1 2.5 2 1 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.1 gi|257386340|ref|YP_003176113.1| - 0.023 14.7 0.0 0.051 13.6 0.0 1.6 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|257386340|ref|YP_003176113.1| - 0.042 14.2 0.3 4.7 7.6 0.0 2.3 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase RskA PF10099.4 gi|257386341|ref|YP_003176114.1| - 0.44 10.2 6.0 3.1 7.5 0.1 2.1 2 0 0 2 2 2 0 Anti-sigma-K factor rskA Cytochrom_NNT PF03264.9 gi|257386342|ref|YP_003176115.1| - 0.067 12.6 0.1 0.074 12.4 0.0 1.3 1 0 0 1 1 1 0 NapC/NirT cytochrome c family, N-terminal region Zn-ribbon_8 PF09723.5 gi|257386342|ref|YP_003176115.1| - 0.11 12.5 1.7 2.4 8.2 0.1 2.2 2 0 0 2 2 2 0 Zinc ribbon domain DZR PF12773.2 gi|257386342|ref|YP_003176115.1| - 0.12 12.1 0.8 0.29 10.9 0.6 1.6 1 1 0 1 1 1 0 Double zinc ribbon DNA_RNApol_7kD PF03604.8 gi|257386342|ref|YP_003176115.1| - 0.12 11.8 0.6 8.5 5.9 0.1 2.2 2 0 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Cytochrome_C7 PF14522.1 gi|257386342|ref|YP_003176115.1| - 0.14 11.7 0.9 0.26 10.9 0.7 1.5 1 1 0 1 1 1 0 Cytochrome c7 RNB PF00773.14 gi|257386343|ref|YP_003176116.1| - 1.6e-76 257.7 0.0 1.3e-48 166.0 0.0 2.1 1 1 1 2 2 2 2 RNB domain HxlR PF01638.12 gi|257386344|ref|YP_003176117.1| - 1.2e-27 95.3 0.0 2.2e-27 94.5 0.0 1.4 2 0 0 2 2 2 1 HxlR-like helix-turn-helix PadR PF03551.9 gi|257386344|ref|YP_003176117.1| - 0.07 12.9 0.0 0.11 12.3 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family Peptidase_S13 PF02113.10 gi|257386346|ref|YP_003176119.1| - 0.054 11.9 0.0 0.057 11.9 0.0 1.0 1 0 0 1 1 1 0 D-Ala-D-Ala carboxypeptidase 3 (S13) family SQS_PSY PF00494.14 gi|257386347|ref|YP_003176120.1| - 3.5e-64 216.6 12.4 4.4e-64 216.3 8.6 1.1 1 0 0 1 1 1 1 Squalene/phytoene synthase Ribosomal_L15e PF00827.12 gi|257386348|ref|YP_003176121.1| - 1.1e-80 269.7 6.2 1.3e-80 269.4 4.3 1.0 1 0 0 1 1 1 1 Ribosomal L15 Peripla_BP_2 PF01497.13 gi|257386349|ref|YP_003176122.1| - 7.3e-39 133.3 0.0 8.9e-39 133.0 0.0 1.0 1 0 0 1 1 1 1 Periplasmic binding protein ThiF PF00899.16 gi|257386350|ref|YP_003176123.1| - 5.1e-47 159.1 0.5 7.7e-47 158.5 0.1 1.4 2 0 0 2 2 2 1 ThiF family MoeZ_MoeB PF05237.8 gi|257386350|ref|YP_003176123.1| - 2.1e-30 104.1 0.0 3.2e-30 103.5 0.0 1.3 1 0 0 1 1 1 1 MoeZ/MoeB domain Saccharop_dh PF03435.13 gi|257386350|ref|YP_003176123.1| - 0.00063 18.8 0.1 0.001 18.1 0.0 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase Shikimate_DH PF01488.15 gi|257386350|ref|YP_003176123.1| - 0.007 16.4 0.1 0.012 15.6 0.1 1.4 1 1 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase FdhE PF04216.7 gi|257386350|ref|YP_003176123.1| - 0.025 14.2 0.3 0.039 13.6 0.2 1.2 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation NAD_binding_7 PF13241.1 gi|257386350|ref|YP_003176123.1| - 0.055 13.7 0.0 0.1 12.8 0.0 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding MCPsignal PF00015.16 gi|257386351|ref|YP_003176124.1| - 9.8e-52 175.5 54.7 3.8e-48 163.8 25.8 2.4 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain Laminin_II PF06009.7 gi|257386351|ref|YP_003176124.1| - 1.2e-07 31.5 28.8 0.00016 21.4 1.1 4.2 2 2 2 4 4 4 3 Laminin Domain II DUF948 PF06103.6 gi|257386351|ref|YP_003176124.1| - 1.3e-06 28.2 19.7 0.064 13.1 0.3 4.8 3 1 2 5 5 5 2 Bacterial protein of unknown function (DUF948) Myosin_tail_1 PF01576.14 gi|257386351|ref|YP_003176124.1| - 4.7e-06 24.6 24.4 5.6e-06 24.3 16.9 1.0 1 0 0 1 1 1 1 Myosin tail WXG100 PF06013.7 gi|257386351|ref|YP_003176124.1| - 0.0018 18.2 30.0 0.66 10.0 1.2 5.9 2 2 1 4 4 4 2 Proteins of 100 residues with WXG FliD_C PF07195.7 gi|257386351|ref|YP_003176124.1| - 0.0024 17.2 15.8 0.72 9.1 0.3 3.9 2 2 2 4 4 4 3 Flagellar hook-associated protein 2 C-terminus AAA_13 PF13166.1 gi|257386351|ref|YP_003176124.1| - 0.0024 16.4 22.5 0.094 11.1 5.4 2.1 1 1 1 2 2 2 2 AAA domain DUF972 PF06156.8 gi|257386351|ref|YP_003176124.1| - 0.0057 16.9 1.0 0.0057 16.9 0.7 3.7 2 2 1 3 3 3 1 Protein of unknown function (DUF972) Syntaxin-6_N PF09177.6 gi|257386351|ref|YP_003176124.1| - 0.0059 16.9 26.1 0.22 11.9 0.9 4.5 2 2 3 5 5 5 1 Syntaxin 6, N-terminal DUF2130 PF09903.4 gi|257386351|ref|YP_003176124.1| - 0.0071 15.1 8.0 0.59 8.8 0.1 3.5 1 1 1 3 3 3 2 Uncharacterized protein conserved in bacteria (DUF2130) IncA PF04156.9 gi|257386351|ref|YP_003176124.1| - 0.0078 15.8 20.4 0.022 14.3 5.9 2.8 1 1 1 2 2 2 1 IncA protein BLOC1_2 PF10046.4 gi|257386351|ref|YP_003176124.1| - 0.014 15.5 22.2 2.6 8.2 1.4 5.0 2 2 2 4 4 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF1664 PF07889.7 gi|257386351|ref|YP_003176124.1| - 0.016 14.9 21.5 0.23 11.2 1.6 4.4 2 2 1 3 3 3 0 Protein of unknown function (DUF1664) Reo_sigmaC PF04582.7 gi|257386351|ref|YP_003176124.1| - 0.018 14.2 23.6 0.13 11.3 5.6 2.5 1 1 0 2 2 2 0 Reovirus sigma C capsid protein DASH_Duo1 PF08651.5 gi|257386351|ref|YP_003176124.1| - 0.021 14.3 9.7 1.2 8.7 0.1 4.5 2 2 3 5 5 5 0 DASH complex subunit Duo1 NPV_P10 PF05531.7 gi|257386351|ref|YP_003176124.1| - 0.035 14.3 25.8 4.2 7.7 0.7 5.8 2 2 2 4 4 4 0 Nucleopolyhedrovirus P10 protein Vps53_N PF04100.7 gi|257386351|ref|YP_003176124.1| - 0.035 12.8 27.9 0.085 11.6 7.7 3.2 1 1 0 2 2 2 0 Vps53-like, N-terminal GAS PF13851.1 gi|257386351|ref|YP_003176124.1| - 0.049 12.8 6.9 0.26 10.4 0.4 3.0 2 2 1 3 3 3 0 Growth-arrest specific micro-tubule binding Laminin_I PF06008.9 gi|257386351|ref|YP_003176124.1| - 0.061 12.6 31.0 1.8 7.8 2.6 4.0 1 1 2 3 3 3 0 Laminin Domain I Mnd1 PF03962.10 gi|257386351|ref|YP_003176124.1| - 0.076 12.6 19.0 0.028 14.0 3.0 2.8 1 1 2 3 3 3 0 Mnd1 family TMPIT PF07851.8 gi|257386351|ref|YP_003176124.1| - 0.15 11.1 8.9 0.63 9.0 0.3 3.1 2 2 1 3 3 3 0 TMPIT-like protein APG6 PF04111.7 gi|257386351|ref|YP_003176124.1| - 0.16 10.9 16.5 0.11 11.4 2.2 2.2 2 0 0 2 2 2 0 Autophagy protein Apg6 SNARE PF05739.14 gi|257386351|ref|YP_003176124.1| - 0.17 11.5 37.7 0.46 10.2 1.4 6.9 3 2 4 8 8 7 0 SNARE domain FlaC_arch PF05377.6 gi|257386351|ref|YP_003176124.1| - 0.18 11.7 23.7 0.17 11.8 1.5 5.3 6 1 0 6 6 5 0 Flagella accessory protein C (FlaC) DUF1993 PF09351.5 gi|257386351|ref|YP_003176124.1| - 0.19 11.6 0.2 0.19 11.6 0.1 3.8 1 1 2 4 4 4 0 Domain of unknown function (DUF1993) Syntaxin PF00804.20 gi|257386351|ref|YP_003176124.1| - 0.24 11.5 27.0 0.59 10.3 1.4 4.9 1 1 3 4 4 4 0 Syntaxin LOH1CR12 PF10158.4 gi|257386351|ref|YP_003176124.1| - 0.26 11.0 12.6 1.9 8.2 0.7 4.2 1 1 3 5 5 5 0 Tumour suppressor protein DUF2450 PF10475.4 gi|257386351|ref|YP_003176124.1| - 0.26 10.1 8.3 0.17 10.7 2.6 2.4 1 1 1 2 2 2 0 Protein of unknown function N-terminal domain (DUF2450) Spc7 PF08317.6 gi|257386351|ref|YP_003176124.1| - 0.28 9.7 18.8 0.18 10.4 2.1 2.7 1 1 2 3 3 3 0 Spc7 kinetochore protein DUF4200 PF13863.1 gi|257386351|ref|YP_003176124.1| - 0.31 10.9 16.0 0.64 9.9 2.0 3.6 2 2 2 4 4 4 0 Domain of unknown function (DUF4200) V_ATPase_I PF01496.14 gi|257386351|ref|YP_003176124.1| - 0.34 8.7 13.2 0.69 7.6 8.9 1.6 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF2203 PF09969.4 gi|257386351|ref|YP_003176124.1| - 0.35 11.1 19.5 0.17 12.1 0.9 4.0 1 1 1 3 3 3 0 Uncharacterized conserved protein (DUF2203) FlgN PF05130.7 gi|257386351|ref|YP_003176124.1| - 0.4 10.9 21.8 0.26 11.5 3.2 3.4 1 1 2 3 3 3 0 FlgN protein APG17 PF04108.7 gi|257386351|ref|YP_003176124.1| - 0.51 9.0 17.2 1 8.0 1.2 3.2 1 1 2 3 3 3 0 Autophagy protein Apg17 Rsd_AlgQ PF04353.8 gi|257386351|ref|YP_003176124.1| - 0.62 9.7 12.5 1.1 8.9 0.1 3.9 2 2 2 4 4 4 0 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ Sec5 PF15469.1 gi|257386351|ref|YP_003176124.1| - 0.84 9.3 4.6 1.9 8.1 0.9 2.9 1 1 2 3 3 3 0 Exocyst complex component Sec5 Nup54 PF13874.1 gi|257386351|ref|YP_003176124.1| - 0.94 9.1 11.9 1.4 8.6 0.6 3.5 2 2 2 4 4 4 0 Nucleoporin complex subunit 54 Cauli_AT PF03233.8 gi|257386351|ref|YP_003176124.1| - 1 9.0 8.1 10 5.8 0.2 3.4 1 1 1 3 3 3 0 Aphid transmission protein YscO PF07321.7 gi|257386351|ref|YP_003176124.1| - 1.5 8.6 19.3 0.63 9.8 3.3 3.1 2 1 0 3 3 3 0 Type III secretion protein YscO Seryl_tRNA_N PF02403.17 gi|257386351|ref|YP_003176124.1| - 1.7 8.6 24.4 1.3 9.0 2.1 4.1 1 1 2 4 4 4 0 Seryl-tRNA synthetase N-terminal domain Cortex-I_coil PF09304.5 gi|257386351|ref|YP_003176124.1| - 1.9 8.5 17.8 6 6.9 0.3 4.1 1 1 2 4 4 4 0 Cortexillin I, coiled coil DUF4618 PF15397.1 gi|257386351|ref|YP_003176124.1| - 2.1 7.6 11.3 3.2 7.0 2.1 3.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4618) Spectrin PF00435.16 gi|257386351|ref|YP_003176124.1| - 2.7 8.3 21.1 4.1 7.7 1.9 4.7 1 1 5 6 6 6 0 Spectrin repeat Atg14 PF10186.4 gi|257386351|ref|YP_003176124.1| - 2.9 6.7 11.7 0.21 10.4 2.5 2.2 2 1 0 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 AATF-Che1 PF13339.1 gi|257386351|ref|YP_003176124.1| - 3.8 7.6 11.1 4.1e+03 -2.2 7.7 3.6 1 1 0 1 1 0 0 Apoptosis antagonizing transcription factor YtxH PF12732.2 gi|257386351|ref|YP_003176124.1| - 4.9 7.6 22.7 4.9 7.5 0.4 5.4 1 1 2 3 3 2 0 YtxH-like protein DUF2580 PF10824.3 gi|257386351|ref|YP_003176124.1| - 4.9 7.5 37.1 0.051 13.9 1.1 4.4 2 2 2 4 4 3 0 Protein of unknown function (DUF2580) Dor1 PF04124.7 gi|257386351|ref|YP_003176124.1| - 5.5 5.3 10.3 10 4.4 3.5 2.8 1 1 1 2 2 2 0 Dor1-like family Exonuc_VII_S PF02609.11 gi|257386351|ref|YP_003176124.1| - 6 6.7 7.4 1.6 8.5 0.6 3.4 3 1 0 3 3 3 0 Exonuclease VII small subunit DUF2458 PF10454.4 gi|257386351|ref|YP_003176124.1| - 7.2 6.4 8.4 16 5.3 0.3 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2458) Allexi_40kDa PF05549.6 gi|257386351|ref|YP_003176124.1| - 7.4 5.7 11.4 9.9 5.3 1.1 3.0 1 1 1 3 3 3 0 Allexivirus 40kDa protein DUF2205 PF10224.4 gi|257386351|ref|YP_003176124.1| - 8.6 6.0 10.0 0.85 9.2 0.7 3.3 3 1 0 3 3 3 0 Predicted coiled-coil protein (DUF2205) FH2 PF02181.18 gi|257386351|ref|YP_003176124.1| - 9.5 4.9 9.8 21 3.8 0.5 2.9 1 1 1 3 3 3 0 Formin Homology 2 Domain Peptidase_M32 PF02074.10 gi|257386352|ref|YP_003176125.1| - 1.1e-144 482.7 0.1 1.2e-144 482.6 0.1 1.0 1 0 0 1 1 1 1 Carboxypeptidase Taq (M32) metallopeptidase Ribonuc_L-PSP PF01042.16 gi|257386353|ref|YP_003176126.1| - 7e-28 96.8 0.1 7.7e-28 96.6 0.1 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP Ftsk_gamma PF09397.5 gi|257386353|ref|YP_003176126.1| - 0.1 12.3 0.1 3.8 7.2 0.0 2.4 2 0 0 2 2 2 0 Ftsk gamma domain DAP10 PF07213.6 gi|257386355|ref|YP_003176128.1| - 5.4 6.8 7.2 6.8 6.5 5.0 1.1 1 0 0 1 1 1 0 DAP10 membrane protein PAS_9 PF13426.1 gi|257386356|ref|YP_003176129.1| - 1.1e-36 125.3 0.1 1.5e-18 67.0 0.0 3.4 3 0 0 3 3 3 2 PAS domain PAS_4 PF08448.5 gi|257386356|ref|YP_003176129.1| - 9.7e-34 115.7 2.7 5.4e-14 52.1 0.1 3.8 3 0 0 3 3 3 3 PAS fold PAS PF00989.19 gi|257386356|ref|YP_003176129.1| - 2.1e-21 75.8 0.0 7.8e-11 41.7 0.0 2.8 3 0 0 3 3 3 2 PAS fold PAS_3 PF08447.6 gi|257386356|ref|YP_003176129.1| - 6e-11 42.2 0.0 6.3e-06 26.1 0.0 3.0 3 0 0 3 3 3 2 PAS fold PAS_8 PF13188.1 gi|257386356|ref|YP_003176129.1| - 1.7e-08 33.9 0.1 0.00057 19.6 0.0 3.5 3 0 0 3 3 3 2 PAS domain HisKA PF00512.20 gi|257386356|ref|YP_003176129.1| - 0.00052 19.9 1.9 0.001 18.9 0.3 2.4 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain Response_reg PF00072.19 gi|257386356|ref|YP_003176129.1| - 0.0036 17.2 0.1 0.012 15.6 0.0 1.9 2 0 0 2 2 2 1 Response regulator receiver domain HalX PF08663.5 gi|257386357|ref|YP_003176130.1| - 0.0022 17.9 0.3 0.0022 17.9 0.2 1.8 2 0 0 2 2 2 1 HalX domain zinc_ribbon_5 PF13719.1 gi|257386357|ref|YP_003176130.1| - 0.051 13.1 1.8 1.5 8.4 0.1 2.5 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|257386357|ref|YP_003176130.1| - 0.11 12.2 2.0 1.9 8.2 0.2 2.5 2 0 0 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|257386357|ref|YP_003176130.1| - 0.18 11.4 0.9 0.53 9.9 0.6 1.8 1 1 0 1 1 1 0 Putative transposase DNA-binding domain Peptidase_M20 PF01546.23 gi|257386358|ref|YP_003176131.1| - 4e-31 107.9 2.8 5.2e-31 107.6 2.0 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|257386358|ref|YP_003176131.1| - 1.3e-14 53.9 0.2 3.2e-14 52.6 0.1 1.7 2 0 0 2 2 2 1 Peptidase dimerisation domain Peptidase_M28 PF04389.12 gi|257386358|ref|YP_003176131.1| - 0.016 14.9 1.2 0.029 14.1 0.8 1.5 1 0 0 1 1 1 0 Peptidase family M28 DUF368 PF04018.8 gi|257386359|ref|YP_003176132.1| - 7.2e-61 205.6 17.2 9.4e-61 205.2 11.9 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF368) MFS_1 PF07690.11 gi|257386361|ref|YP_003176134.1| - 7.1e-29 100.6 59.9 4.3e-18 65.1 20.7 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily ATG22 PF11700.3 gi|257386361|ref|YP_003176134.1| - 1.8 6.9 18.6 0.0058 15.1 5.6 2.1 2 1 0 2 2 2 0 Vacuole effluxer Atg22 like G_glu_transpept PF01019.16 gi|257386363|ref|YP_003176136.1| - 2.6e-154 514.4 0.1 3e-154 514.3 0.0 1.0 1 0 0 1 1 1 1 Gamma-glutamyltranspeptidase PcrB PF01884.12 gi|257386364|ref|YP_003176137.1| - 4.7e-38 130.7 2.8 7.9e-38 129.9 1.9 1.3 1 1 0 1 1 1 1 PcrB family His_biosynth PF00977.16 gi|257386364|ref|YP_003176137.1| - 1.7e-05 24.1 0.0 3.4e-05 23.2 0.0 1.4 1 0 0 1 1 1 1 Histidine biosynthesis protein NAD_binding_7 PF13241.1 gi|257386364|ref|YP_003176137.1| - 0.035 14.3 0.0 0.081 13.1 0.0 1.5 1 0 0 1 1 1 0 Putative NAD(P)-binding Trp_syntA PF00290.15 gi|257386364|ref|YP_003176137.1| - 0.059 11.8 0.0 1.1 7.7 0.0 2.4 3 0 0 3 3 3 0 Tryptophan synthase alpha chain NMO PF03060.10 gi|257386364|ref|YP_003176137.1| - 0.071 12.2 0.7 1.8 7.6 0.0 2.2 2 0 0 2 2 2 0 Nitronate monooxygenase Dus PF01207.12 gi|257386364|ref|YP_003176137.1| - 0.094 11.5 0.0 0.15 10.8 0.0 1.3 1 0 0 1 1 1 0 Dihydrouridine synthase (Dus) Glyoxalase_2 PF12681.2 gi|257386365|ref|YP_003176138.1| - 4.6e-05 23.9 0.2 6.2e-05 23.5 0.1 1.2 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.20 gi|257386365|ref|YP_003176138.1| - 0.00094 19.1 0.4 0.074 13.0 0.3 2.1 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ABC_tran PF00005.22 gi|257386366|ref|YP_003176139.1| - 2.6e-29 102.2 0.0 3.6e-29 101.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|257386366|ref|YP_003176139.1| - 1.4e-11 44.9 0.4 6e-05 23.1 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_25 PF13481.1 gi|257386366|ref|YP_003176139.1| - 2.1e-05 24.0 0.0 4.5e-05 22.9 0.0 1.7 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|257386366|ref|YP_003176139.1| - 0.00017 20.8 0.0 0.13 11.4 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|257386366|ref|YP_003176139.1| - 0.00021 20.7 0.0 0.0004 19.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain IstB_IS21 PF01695.12 gi|257386366|ref|YP_003176139.1| - 0.00055 19.4 0.0 0.38 10.1 0.0 2.6 3 0 0 3 3 3 2 IstB-like ATP binding protein SbcCD_C PF13558.1 gi|257386366|ref|YP_003176139.1| - 0.00069 19.4 0.1 0.0015 18.3 0.0 1.6 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_16 PF13191.1 gi|257386366|ref|YP_003176139.1| - 0.017 15.0 0.5 0.04 13.8 0.3 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_15 PF13175.1 gi|257386366|ref|YP_003176139.1| - 0.034 13.2 0.0 0.83 8.6 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_14 PF13173.1 gi|257386366|ref|YP_003176139.1| - 0.064 13.1 0.0 2 8.3 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|257386366|ref|YP_003176139.1| - 0.079 13.2 0.0 0.12 12.6 0.0 1.2 1 0 0 1 1 1 0 AAA domain FeoA PF04023.9 gi|257386366|ref|YP_003176139.1| - 0.11 12.5 0.5 0.28 11.2 0.2 1.9 2 1 0 2 2 1 0 FeoA domain DUF258 PF03193.11 gi|257386366|ref|YP_003176139.1| - 0.19 10.8 0.0 0.31 10.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_19 PF13245.1 gi|257386366|ref|YP_003176139.1| - 1.7 8.4 5.6 3.7 7.3 0.1 2.9 3 0 0 3 3 3 0 Part of AAA domain CbiQ PF02361.11 gi|257386367|ref|YP_003176140.1| - 1.2e-24 87.1 7.7 1.2e-24 87.1 5.4 1.4 2 0 0 2 2 2 1 Cobalt transport protein PDGLE PF13190.1 gi|257386368|ref|YP_003176141.1| - 4.1e-13 48.8 1.7 5.3e-13 48.4 1.2 1.1 1 0 0 1 1 1 1 PDGLE domain DUF3995 PF13160.1 gi|257386368|ref|YP_003176141.1| - 0.015 15.3 0.1 0.015 15.3 0.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3995) Yip1 PF04893.12 gi|257386368|ref|YP_003176141.1| - 0.016 14.7 0.9 0.019 14.4 0.6 1.1 1 0 0 1 1 1 0 Yip1 domain CbiM PF01891.11 gi|257386369|ref|YP_003176142.1| - 1.8e-62 210.6 22.8 2e-62 210.4 15.8 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region Doppel PF11466.3 gi|257386369|ref|YP_003176142.1| - 0.18 11.3 4.3 5.8 6.5 1.2 2.7 2 0 0 2 2 2 0 Prion-like protein Doppel DUF3816 PF12822.2 gi|257386369|ref|YP_003176142.1| - 2.8 7.7 18.2 4.7 7.0 11.5 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF3816) NikR_C PF08753.6 gi|257386370|ref|YP_003176143.1| - 2e-25 88.4 6.8 3e-25 87.9 4.7 1.3 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.16 gi|257386370|ref|YP_003176143.1| - 1.8e-05 24.4 0.5 4.7e-05 23.0 0.1 1.9 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family RNA_GG_bind PF10258.4 gi|257386370|ref|YP_003176143.1| - 0.02 14.5 0.0 0.029 14.0 0.0 1.2 1 0 0 1 1 1 0 PHAX RNA-binding domain T2SE PF00437.15 gi|257386372|ref|YP_003176145.1| - 1.1e-11 44.1 0.1 1.9e-11 43.3 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein KH_1 PF00013.24 gi|257386372|ref|YP_003176145.1| - 4.1e-06 26.3 0.8 1.9e-05 24.1 0.1 2.5 2 0 0 2 2 2 1 KH domain PIN PF01850.16 gi|257386372|ref|YP_003176145.1| - 4.7e-06 26.9 0.3 1.7e-05 25.1 0.0 2.1 2 0 0 2 2 2 1 PIN domain AAA_17 PF13207.1 gi|257386372|ref|YP_003176145.1| - 0.00038 21.2 0.1 0.0028 18.4 0.0 2.4 2 1 0 2 2 1 1 AAA domain AAA_33 PF13671.1 gi|257386372|ref|YP_003176145.1| - 0.00048 20.0 0.0 0.0048 16.7 0.0 2.2 2 0 0 2 2 2 1 AAA domain KH_2 PF07650.12 gi|257386372|ref|YP_003176145.1| - 0.0019 17.7 0.9 0.0049 16.3 0.6 1.7 1 0 0 1 1 1 1 KH domain Thymidylate_kin PF02223.12 gi|257386372|ref|YP_003176145.1| - 0.0019 17.5 0.1 0.0066 15.8 0.0 2.0 2 1 0 2 2 2 1 Thymidylate kinase IstB_IS21 PF01695.12 gi|257386372|ref|YP_003176145.1| - 0.0021 17.4 0.0 0.0038 16.6 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein Zeta_toxin PF06414.7 gi|257386372|ref|YP_003176145.1| - 0.0066 15.5 0.0 0.013 14.6 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_29 PF13555.1 gi|257386372|ref|YP_003176145.1| - 0.0068 15.9 0.0 0.017 14.6 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|257386372|ref|YP_003176145.1| - 0.011 15.7 0.1 0.19 11.7 0.0 2.3 2 0 0 2 2 2 0 AAA ATPase domain AAA_30 PF13604.1 gi|257386372|ref|YP_003176145.1| - 0.015 14.8 0.0 0.034 13.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|257386372|ref|YP_003176145.1| - 0.02 14.6 0.0 0.071 12.8 0.0 2.0 2 0 0 2 2 1 0 Part of AAA domain NTPase_1 PF03266.10 gi|257386372|ref|YP_003176145.1| - 0.027 14.1 0.0 0.065 12.9 0.0 1.6 1 0 0 1 1 1 0 NTPase KaiC PF06745.8 gi|257386372|ref|YP_003176145.1| - 0.029 13.5 0.0 0.21 10.7 0.0 2.1 2 0 0 2 2 2 0 KaiC AAA_5 PF07728.9 gi|257386372|ref|YP_003176145.1| - 0.035 13.8 0.0 0.077 12.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_18 PF13238.1 gi|257386372|ref|YP_003176145.1| - 0.041 14.1 0.0 0.11 12.7 0.0 1.8 2 0 0 2 2 1 0 AAA domain AAA_22 PF13401.1 gi|257386372|ref|YP_003176145.1| - 0.06 13.4 0.0 0.16 12.1 0.0 1.7 1 0 0 1 1 1 0 AAA domain PIN_4 PF13638.1 gi|257386372|ref|YP_003176145.1| - 0.063 13.3 0.0 0.22 11.6 0.0 1.9 1 1 0 1 1 1 0 PIN domain DUF258 PF03193.11 gi|257386372|ref|YP_003176145.1| - 0.098 11.8 0.0 0.18 10.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_14 PF13173.1 gi|257386372|ref|YP_003176145.1| - 0.12 12.3 0.0 0.25 11.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain KTI12 PF08433.5 gi|257386372|ref|YP_003176145.1| - 0.19 10.8 0.0 0.34 10.0 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 BON PF04972.12 gi|257386373|ref|YP_003176146.1| - 0.09 12.5 0.1 0.21 11.3 0.0 1.6 1 0 0 1 1 1 0 BON domain F420_oxidored PF03807.12 gi|257386374|ref|YP_003176147.1| - 4.8e-20 71.7 0.1 8.1e-20 71.0 0.0 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.18 gi|257386374|ref|YP_003176147.1| - 2.7e-05 23.9 0.0 4.2e-05 23.3 0.0 1.4 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.11 gi|257386374|ref|YP_003176147.1| - 8e-05 22.1 0.0 0.0001 21.7 0.0 1.2 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_2 PF03446.10 gi|257386374|ref|YP_003176147.1| - 0.0011 18.7 0.0 0.0025 17.6 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_10 PF13460.1 gi|257386374|ref|YP_003176147.1| - 0.0016 18.4 2.3 0.0016 18.4 1.6 1.8 1 1 1 2 2 2 1 NADH(P)-binding adh_short PF00106.20 gi|257386374|ref|YP_003176147.1| - 0.0027 17.6 1.1 0.0027 17.6 0.8 1.9 2 0 0 2 2 2 1 short chain dehydrogenase Semialdhyde_dh PF01118.19 gi|257386374|ref|YP_003176147.1| - 0.035 14.3 0.0 0.059 13.6 0.0 1.4 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain Bac_luciferase PF00296.15 gi|257386374|ref|YP_003176147.1| - 0.039 13.0 5.0 0.051 12.6 3.4 1.4 1 1 0 1 1 1 0 Luciferase-like monooxygenase PDH PF02153.12 gi|257386374|ref|YP_003176147.1| - 0.045 12.6 0.0 0.073 11.9 0.0 1.3 1 0 0 1 1 1 0 Prephenate dehydrogenase IlvN PF07991.7 gi|257386374|ref|YP_003176147.1| - 0.056 12.8 0.1 0.16 11.3 0.1 1.8 1 1 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain PEP-utilizers PF00391.18 gi|257386374|ref|YP_003176147.1| - 0.086 12.4 0.2 0.45 10.1 0.0 2.2 2 0 0 2 2 2 0 PEP-utilising enzyme, mobile domain NmrA PF05368.8 gi|257386374|ref|YP_003176147.1| - 0.087 12.0 0.1 0.17 11.0 0.0 1.6 2 0 0 2 2 2 0 NmrA-like family TatC PF00902.13 gi|257386375|ref|YP_003176148.1| - 0.14 11.5 0.3 0.14 11.5 0.2 1.6 2 0 0 2 2 2 0 Sec-independent protein translocase protein (TatC) DUF1469 PF07332.6 gi|257386375|ref|YP_003176148.1| - 1.7 8.3 5.3 2 8.1 3.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) HAD_2 PF13419.1 gi|257386376|ref|YP_003176149.1| - 2.7e-12 47.2 1.4 2.6e-10 40.7 1.0 2.3 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|257386376|ref|YP_003176149.1| - 3.6e-08 34.0 1.0 6.7e-08 33.2 0.7 1.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Flagellin_IN PF07196.8 gi|257386376|ref|YP_003176149.1| - 0.024 14.5 0.1 0.055 13.4 0.0 1.6 1 0 0 1 1 1 0 Flagellin hook IN motif UPF0146 PF03686.8 gi|257386377|ref|YP_003176150.1| - 5.3e-30 103.8 0.0 6e-30 103.6 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0146) Methyltransf_23 PF13489.1 gi|257386377|ref|YP_003176150.1| - 0.01 15.5 0.0 0.012 15.2 0.0 1.2 1 1 0 1 1 1 0 Methyltransferase domain Peptidase_M54 PF07998.6 gi|257386378|ref|YP_003176151.1| - 3.2e-22 79.2 0.0 3.9e-22 78.9 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M54 Peptidase_M10 PF00413.19 gi|257386378|ref|YP_003176151.1| - 3e-05 23.7 0.0 3e-05 23.7 0.0 1.2 1 0 0 1 1 1 1 Matrixin Reprolysin_2 PF13574.1 gi|257386378|ref|YP_003176151.1| - 6.3e-05 23.1 0.0 7.3e-05 22.8 0.0 1.1 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_4 PF13583.1 gi|257386378|ref|YP_003176151.1| - 9.4e-05 22.0 0.0 0.00011 21.7 0.0 1.1 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_3 PF13582.1 gi|257386378|ref|YP_003176151.1| - 0.00046 20.7 0.0 0.00054 20.4 0.0 1.3 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_5 PF13688.1 gi|257386378|ref|YP_003176151.1| - 0.0038 17.1 0.2 0.0049 16.8 0.1 1.3 1 1 0 1 1 1 1 Metallo-peptidase family M12 DUF1025 PF06262.6 gi|257386378|ref|YP_003176151.1| - 0.014 15.1 0.0 0.025 14.3 0.0 1.4 1 0 0 1 1 1 0 Possibl zinc metallo-peptidase Metallopep PF12044.3 gi|257386378|ref|YP_003176151.1| - 0.027 12.9 0.3 0.038 12.4 0.2 1.1 1 0 0 1 1 1 0 Putative peptidase family Peptidase_M66 PF10462.4 gi|257386378|ref|YP_003176151.1| - 0.031 13.1 0.0 0.041 12.7 0.0 1.1 1 0 0 1 1 1 0 Peptidase M66 Peptidase_M43 PF05572.8 gi|257386378|ref|YP_003176151.1| - 0.052 13.1 0.0 0.072 12.6 0.0 1.3 1 0 0 1 1 1 0 Pregnancy-associated plasma protein-A ABC_tran PF00005.22 gi|257386380|ref|YP_003176153.1| - 4.5e-38 130.6 0.0 6.4e-20 71.8 0.0 2.9 2 1 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|257386380|ref|YP_003176153.1| - 4.2e-13 49.9 0.1 0.015 15.2 0.0 4.2 3 1 0 4 4 4 4 AAA domain SMC_N PF02463.14 gi|257386380|ref|YP_003176153.1| - 8.5e-13 48.0 2.7 0.0017 17.5 0.0 4.3 4 0 0 4 4 4 2 RecF/RecN/SMC N terminal domain RLI PF04068.10 gi|257386380|ref|YP_003176153.1| - 1.4e-12 46.9 1.0 2.7e-12 46.0 0.7 1.5 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI AAA_17 PF13207.1 gi|257386380|ref|YP_003176153.1| - 1.7e-10 41.7 0.1 1.7e-05 25.6 0.0 3.0 2 2 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|257386380|ref|YP_003176153.1| - 1.1e-06 28.8 0.4 0.017 15.1 0.0 2.7 2 1 0 2 2 2 2 AAA ATPase domain AAA PF00004.24 gi|257386380|ref|YP_003176153.1| - 3.3e-06 27.3 0.0 0.11 12.6 0.0 2.9 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|257386380|ref|YP_003176153.1| - 4.6e-06 26.7 0.0 0.01 15.9 0.0 3.0 2 2 0 2 2 2 1 AAA domain RNA_helicase PF00910.17 gi|257386380|ref|YP_003176153.1| - 2.3e-05 24.5 0.0 0.26 11.5 0.0 2.7 2 0 0 2 2 2 2 RNA helicase AAA_18 PF13238.1 gi|257386380|ref|YP_003176153.1| - 4.5e-05 23.7 0.0 0.056 13.7 0.0 2.8 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|257386380|ref|YP_003176153.1| - 7.8e-05 23.0 0.0 0.59 10.4 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.1 gi|257386380|ref|YP_003176153.1| - 0.00012 21.5 1.3 0.37 10.1 0.0 3.6 4 0 0 4 4 4 1 AAA domain AAA_33 PF13671.1 gi|257386380|ref|YP_003176153.1| - 0.00024 20.9 0.1 0.054 13.3 0.0 3.2 4 0 0 4 4 2 1 AAA domain Fer4 PF00037.22 gi|257386380|ref|YP_003176153.1| - 0.00025 20.5 1.3 0.00025 20.5 0.9 2.9 3 0 0 3 3 3 1 4Fe-4S binding domain RuvB_N PF05496.7 gi|257386380|ref|YP_003176153.1| - 0.00029 19.9 0.0 0.21 10.6 0.0 2.6 3 0 0 3 3 2 1 Holliday junction DNA helicase ruvB N-terminus AAA_29 PF13555.1 gi|257386380|ref|YP_003176153.1| - 0.0003 20.2 0.1 0.67 9.5 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain NACHT PF05729.7 gi|257386380|ref|YP_003176153.1| - 0.00034 20.3 0.0 0.96 9.0 0.0 2.5 2 0 0 2 2 2 2 NACHT domain DUF258 PF03193.11 gi|257386380|ref|YP_003176153.1| - 0.00037 19.7 0.0 0.32 10.1 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function, DUF258 NB-ARC PF00931.17 gi|257386380|ref|YP_003176153.1| - 0.0018 17.2 0.0 1.1 8.1 0.0 2.2 2 0 0 2 2 2 2 NB-ARC domain AAA_14 PF13173.1 gi|257386380|ref|YP_003176153.1| - 0.0019 18.0 0.0 2.8 7.8 0.0 3.1 3 0 0 3 3 3 1 AAA domain Fer4_6 PF12837.2 gi|257386380|ref|YP_003176153.1| - 0.002 17.8 13.7 0.0039 16.9 0.9 2.4 2 0 0 2 2 2 1 4Fe-4S binding domain Rad17 PF03215.10 gi|257386380|ref|YP_003176153.1| - 0.0032 16.2 0.0 0.55 8.8 0.0 2.5 2 0 0 2 2 2 1 Rad17 cell cycle checkpoint protein SbcCD_C PF13558.1 gi|257386380|ref|YP_003176153.1| - 0.0033 17.3 0.1 2.4 8.1 0.1 2.9 2 1 0 2 2 2 1 Putative exonuclease SbcCD, C subunit AAA_10 PF12846.2 gi|257386380|ref|YP_003176153.1| - 0.0037 16.7 0.1 0.8 9.0 0.0 3.1 2 1 0 2 2 2 1 AAA-like domain MobB PF03205.9 gi|257386380|ref|YP_003176153.1| - 0.0047 16.6 0.1 1.1 9.0 0.0 2.7 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_19 PF13245.1 gi|257386380|ref|YP_003176153.1| - 0.0048 16.6 0.8 1 9.1 0.0 3.4 3 0 0 3 3 3 1 Part of AAA domain AAA_24 PF13479.1 gi|257386380|ref|YP_003176153.1| - 0.006 16.1 0.1 2.2 7.8 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_5 PF07728.9 gi|257386380|ref|YP_003176153.1| - 0.012 15.3 0.1 2 8.1 0.0 3.2 3 1 0 3 3 3 0 AAA domain (dynein-related subfamily) SRP54 PF00448.17 gi|257386380|ref|YP_003176153.1| - 0.014 14.8 0.1 2.6 7.4 0.0 2.4 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain NTPase_1 PF03266.10 gi|257386380|ref|YP_003176153.1| - 0.014 15.0 0.7 6.4 6.4 0.0 2.9 3 0 0 3 3 3 0 NTPase AAA_28 PF13521.1 gi|257386380|ref|YP_003176153.1| - 0.017 15.0 0.0 2.3 8.1 0.0 2.8 2 0 0 2 2 2 0 AAA domain Fer4_2 PF12797.2 gi|257386380|ref|YP_003176153.1| - 0.027 14.3 11.4 0.086 12.8 1.1 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Thymidylate_kin PF02223.12 gi|257386380|ref|YP_003176153.1| - 0.07 12.5 0.0 8.2 5.7 0.0 2.4 2 0 0 2 2 2 0 Thymidylate kinase DUF87 PF01935.12 gi|257386380|ref|YP_003176153.1| - 0.074 12.8 0.3 11 5.6 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function DUF87 Miro PF08477.8 gi|257386380|ref|YP_003176153.1| - 0.16 12.5 0.0 20 5.6 0.0 2.5 2 0 0 2 2 2 0 Miro-like protein Sigma54_activ_2 PF14532.1 gi|257386380|ref|YP_003176153.1| - 0.17 11.8 0.0 22 5.0 0.0 2.5 2 0 0 2 2 2 0 Sigma-54 interaction domain ArgK PF03308.11 gi|257386380|ref|YP_003176153.1| - 0.19 10.4 0.6 4.5 5.9 0.0 2.2 2 0 0 2 2 2 0 ArgK protein Fer4_9 PF13187.1 gi|257386380|ref|YP_003176153.1| - 0.3 11.4 10.8 0.59 10.4 7.5 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain AAA_13 PF13166.1 gi|257386380|ref|YP_003176153.1| - 0.31 9.4 0.0 12 4.1 0.0 2.2 2 0 0 2 2 2 0 AAA domain Fer4_21 PF14697.1 gi|257386380|ref|YP_003176153.1| - 0.88 9.4 7.7 1.8 8.4 5.3 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|257386380|ref|YP_003176153.1| - 1.3 9.4 10.9 0.37 11.2 0.8 2.1 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|257386380|ref|YP_003176153.1| - 1.4 8.7 13.3 4.2 7.2 9.4 1.7 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|257386380|ref|YP_003176153.1| - 3.5 8.4 13.0 0.12 12.9 2.1 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain DUF3040 PF11239.3 gi|257386381|ref|YP_003176154.1| - 1 9.4 8.9 0.42 10.6 1.9 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3040) HTH_27 PF13463.1 gi|257386382|ref|YP_003176155.1| - 0.00074 19.7 0.0 0.00088 19.5 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|257386382|ref|YP_003176155.1| - 0.00084 18.9 0.1 0.0011 18.6 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_12 PF08461.5 gi|257386382|ref|YP_003176155.1| - 0.0077 15.9 0.1 0.018 14.7 0.1 1.7 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_24 PF13412.1 gi|257386382|ref|YP_003176155.1| - 0.024 14.0 0.0 0.033 13.5 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HxlR PF01638.12 gi|257386382|ref|YP_003176155.1| - 0.028 14.0 0.0 0.035 13.7 0.0 1.2 1 0 0 1 1 1 0 HxlR-like helix-turn-helix PadR PF03551.9 gi|257386382|ref|YP_003176155.1| - 0.043 13.5 0.0 0.13 12.0 0.0 1.7 1 1 1 2 2 2 0 Transcriptional regulator PadR-like family GntR PF00392.16 gi|257386382|ref|YP_003176155.1| - 0.045 13.1 0.1 0.064 12.6 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_45 PF14947.1 gi|257386382|ref|YP_003176155.1| - 0.053 13.3 0.0 0.08 12.7 0.0 1.3 1 1 0 1 1 1 0 Winged helix-turn-helix MarR_2 PF12802.2 gi|257386382|ref|YP_003176155.1| - 0.056 13.1 0.0 0.078 12.6 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_11 PF08279.7 gi|257386382|ref|YP_003176155.1| - 0.059 13.0 0.0 0.086 12.5 0.0 1.2 1 0 0 1 1 1 0 HTH domain PaaX PF07848.7 gi|257386382|ref|YP_003176155.1| - 0.064 13.2 0.0 0.093 12.7 0.0 1.3 1 0 0 1 1 1 0 PaaX-like protein Thioredoxin PF00085.15 gi|257386383|ref|YP_003176156.1| - 3.8e-21 74.7 0.0 4.5e-21 74.4 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|257386383|ref|YP_003176156.1| - 3.1e-07 30.5 0.1 1.7e-05 24.9 0.1 2.0 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.1 gi|257386383|ref|YP_003176156.1| - 8e-07 29.0 0.0 0.0031 17.5 0.0 2.1 1 1 1 2 2 2 2 Thioredoxin-like Thioredoxin_3 PF13192.1 gi|257386383|ref|YP_003176156.1| - 3.1e-05 23.6 0.0 3.7e-05 23.4 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin domain Thioredoxin_9 PF14595.1 gi|257386383|ref|YP_003176156.1| - 0.00029 20.4 0.0 0.00034 20.1 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Redoxin PF08534.5 gi|257386383|ref|YP_003176156.1| - 0.00039 19.9 0.2 0.0058 16.1 0.2 1.9 1 1 0 1 1 1 1 Redoxin DSBA PF01323.15 gi|257386383|ref|YP_003176156.1| - 0.0009 18.8 0.1 0.084 12.4 0.0 2.0 1 1 1 2 2 2 2 DSBA-like thioredoxin domain AhpC-TSA PF00578.16 gi|257386383|ref|YP_003176156.1| - 0.0014 18.2 0.3 1 9.0 0.0 2.1 1 1 1 2 2 2 2 AhpC/TSA family Glutaredoxin PF00462.19 gi|257386383|ref|YP_003176156.1| - 0.0023 17.8 0.1 0.0053 16.7 0.0 1.7 1 1 1 2 2 2 1 Glutaredoxin DUF836 PF05768.9 gi|257386383|ref|YP_003176156.1| - 0.0079 16.4 0.1 0.0097 16.1 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) DUF4371 PF14291.1 gi|257386383|ref|YP_003176156.1| - 0.012 15.2 0.0 0.013 15.0 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4371) HyaE PF07449.6 gi|257386383|ref|YP_003176156.1| - 0.045 13.6 0.0 0.052 13.4 0.0 1.2 1 0 0 1 1 1 0 Hydrogenase-1 expression protein HyaE Thioredoxin_5 PF13743.1 gi|257386383|ref|YP_003176156.1| - 0.055 13.0 0.0 0.061 12.8 0.0 1.1 1 0 0 1 1 1 0 Thioredoxin Thioredoxin_7 PF13899.1 gi|257386383|ref|YP_003176156.1| - 0.15 12.1 2.3 0.2 11.6 0.1 2.2 2 1 0 2 2 2 0 Thioredoxin-like Sec61_beta PF03911.11 gi|257386384|ref|YP_003176157.1| - 2.2e-05 24.1 0.0 3.2e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 Sec61beta family DUF2077 PF09850.4 gi|257386385|ref|YP_003176158.1| - 0.028 13.8 0.4 0.03 13.7 0.2 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2077) DUF3779 PF12621.3 gi|257386385|ref|YP_003176158.1| - 0.072 12.9 0.1 0.14 12.0 0.1 1.4 1 1 0 1 1 1 0 Phosphate metabolism protein DUF1906 PF08924.6 gi|257386385|ref|YP_003176158.1| - 0.1 12.4 0.8 0.14 12.0 0.5 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1906) DUF402 PF04167.8 gi|257386386|ref|YP_003176159.1| - 2.1e-19 69.1 0.5 3.6e-19 68.3 0.4 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF402) S1 PF00575.18 gi|257386386|ref|YP_003176159.1| - 0.0019 18.2 0.0 0.0056 16.7 0.0 1.8 1 0 0 1 1 1 1 S1 RNA binding domain LVIVD PF08309.6 gi|257386387|ref|YP_003176160.1| - 5.1e-16 57.3 0.0 4.1e-06 25.6 0.0 4.8 5 0 0 5 5 5 3 LVIVD repeat Beta_propel PF09826.4 gi|257386387|ref|YP_003176160.1| - 0.14 10.4 0.0 13 3.9 0.0 2.9 2 1 0 2 2 2 0 Beta propeller domain Tub_2 PF04525.7 gi|257386388|ref|YP_003176161.1| - 2.8e-08 33.3 0.5 0.00036 19.9 0.1 2.9 1 1 2 3 3 3 3 Tubby C 2 DUF2188 PF09954.4 gi|257386388|ref|YP_003176161.1| - 0.0077 16.1 0.0 0.033 14.1 0.0 2.0 2 0 0 2 2 2 1 Uncharacterized protein conserved in bacteria (DUF2188) Big_3_2 PF12245.3 gi|257386388|ref|YP_003176161.1| - 0.021 14.3 0.3 0.06 12.9 0.0 2.1 2 0 0 2 2 2 0 Bacterial Ig-like domain (group 3) ABC_tran PF00005.22 gi|257386389|ref|YP_003176162.1| - 6.2e-20 71.8 0.0 5.7e-09 36.3 0.0 4.3 3 1 0 3 3 3 3 ABC transporter SMC_N PF02463.14 gi|257386389|ref|YP_003176162.1| - 3e-11 42.9 0.0 0.18 10.9 0.0 4.2 4 0 0 4 4 4 4 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|257386389|ref|YP_003176162.1| - 9.5e-11 42.1 4.8 0.00045 20.2 0.0 4.4 4 0 0 4 4 4 3 AAA domain AAA_29 PF13555.1 gi|257386389|ref|YP_003176162.1| - 1.7e-08 33.8 0.0 0.0034 16.8 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|257386389|ref|YP_003176162.1| - 8.4e-06 25.8 0.1 0.18 11.8 0.0 3.3 4 0 0 4 4 4 2 AAA ATPase domain AAA_23 PF13476.1 gi|257386389|ref|YP_003176162.1| - 1.1e-05 25.9 0.0 0.073 13.3 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_25 PF13481.1 gi|257386389|ref|YP_003176162.1| - 1.7e-05 24.3 0.0 0.27 10.5 0.0 3.1 3 0 0 3 3 3 2 AAA domain AAA_22 PF13401.1 gi|257386389|ref|YP_003176162.1| - 2.1e-05 24.6 0.3 0.41 10.7 0.0 3.4 4 0 0 4 4 3 2 AAA domain AAA_33 PF13671.1 gi|257386389|ref|YP_003176162.1| - 0.0001 22.2 0.0 0.39 10.5 0.0 3.2 3 0 0 3 3 3 2 AAA domain DUF258 PF03193.11 gi|257386389|ref|YP_003176162.1| - 0.00018 20.7 0.0 0.46 9.6 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function, DUF258 AAA_10 PF12846.2 gi|257386389|ref|YP_003176162.1| - 0.00019 20.9 0.7 0.13 11.6 0.0 2.9 2 1 0 2 2 2 1 AAA-like domain DnaJ_CXXCXGXG PF00684.14 gi|257386389|ref|YP_003176162.1| - 0.00021 21.2 14.2 0.0046 16.9 0.7 3.8 4 1 0 4 4 3 1 DnaJ central domain AAA_18 PF13238.1 gi|257386389|ref|YP_003176162.1| - 0.00033 20.9 0.0 1.2 9.4 0.0 3.5 3 0 0 3 3 2 1 AAA domain AAA_14 PF13173.1 gi|257386389|ref|YP_003176162.1| - 0.00053 19.8 0.1 1.2 9.0 0.0 3.5 4 0 0 4 4 4 1 AAA domain KaiC PF06745.8 gi|257386389|ref|YP_003176162.1| - 0.0012 18.0 0.0 0.48 9.4 0.0 2.6 2 0 0 2 2 2 1 KaiC AAA_15 PF13175.1 gi|257386389|ref|YP_003176162.1| - 0.0026 16.8 0.0 0.56 9.1 0.0 2.9 3 0 0 3 3 3 1 AAA ATPase domain APS_kinase PF01583.15 gi|257386389|ref|YP_003176162.1| - 0.0031 17.2 0.1 3.2 7.4 0.0 2.6 2 0 0 2 2 2 2 Adenylylsulphate kinase AAA_17 PF13207.1 gi|257386389|ref|YP_003176162.1| - 0.0031 18.3 8.3 0.71 10.7 0.0 4.5 4 1 0 4 4 4 2 AAA domain BCA_ABC_TP_C PF12399.3 gi|257386389|ref|YP_003176162.1| - 0.011 15.4 0.7 0.061 13.0 0.3 2.4 2 0 0 2 2 2 0 Branched-chain amino acid ATP-binding cassette transporter DUF2075 PF09848.4 gi|257386389|ref|YP_003176162.1| - 0.015 14.3 0.1 2.6 6.9 0.0 2.2 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) NACHT PF05729.7 gi|257386389|ref|YP_003176162.1| - 0.028 14.1 0.0 1.9 8.1 0.0 2.4 2 0 0 2 2 2 0 NACHT domain Viral_helicase1 PF01443.13 gi|257386389|ref|YP_003176162.1| - 0.028 13.9 0.0 1.4 8.3 0.0 2.4 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase Zn-ribbon_8 PF09723.5 gi|257386389|ref|YP_003176162.1| - 0.037 13.9 14.4 6.6 6.7 0.7 4.6 4 0 0 4 4 4 0 Zinc ribbon domain cobW PF02492.14 gi|257386389|ref|YP_003176162.1| - 0.042 13.2 0.2 2.7 7.4 0.0 2.5 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain MobB PF03205.9 gi|257386389|ref|YP_003176162.1| - 0.05 13.3 0.2 2.2 7.9 0.0 2.8 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B Arch_ATPase PF01637.13 gi|257386389|ref|YP_003176162.1| - 0.062 12.9 0.0 5.5 6.6 0.0 2.4 2 0 0 2 2 2 0 Archaeal ATPase AAA_19 PF13245.1 gi|257386389|ref|YP_003176162.1| - 0.091 12.5 0.2 21 4.9 0.0 2.9 2 0 0 2 2 2 0 Part of AAA domain PRK PF00485.13 gi|257386389|ref|YP_003176162.1| - 0.11 12.0 0.1 2.8 7.4 0.0 2.4 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family HypA PF01155.14 gi|257386389|ref|YP_003176162.1| - 0.3 10.7 7.8 2.1 8.0 0.2 3.8 4 0 0 4 4 4 0 Hydrogenase expression/synthesis hypA family MFS_1 PF07690.11 gi|257386390|ref|YP_003176163.1| - 1.2e-39 136.0 75.5 7.4e-34 117.0 30.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily LacY_symp PF01306.14 gi|257386390|ref|YP_003176163.1| - 0.0011 17.5 7.7 0.0048 15.4 0.4 2.3 1 1 1 2 2 2 2 LacY proton/sugar symporter OATP PF03137.15 gi|257386390|ref|YP_003176163.1| - 9 4.2 16.9 0.013 13.5 1.5 2.8 2 1 1 3 3 3 0 Organic Anion Transporter Polypeptide (OATP) family AP_endonuc_2 PF01261.19 gi|257386391|ref|YP_003176164.1| - 4.7e-17 62.0 1.5 4.7e-17 62.0 1.1 1.7 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel MR_MLE_C PF13378.1 gi|257386392|ref|YP_003176165.1| - 1.2e-30 105.7 0.0 2.6e-30 104.6 0.0 1.6 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.11 gi|257386392|ref|YP_003176165.1| - 3.7e-19 68.8 0.0 7.6e-19 67.8 0.0 1.5 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MR_MLE PF01188.16 gi|257386392|ref|YP_003176165.1| - 4.9e-16 59.0 0.9 2e-15 57.0 0.4 2.3 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Enolase_N PF03952.11 gi|257386392|ref|YP_003176165.1| - 0.00063 19.6 0.0 0.0013 18.6 0.0 1.5 1 0 0 1 1 1 1 Enolase, N-terminal domain Hydrolase PF00702.21 gi|257386392|ref|YP_003176165.1| - 0.0038 17.6 0.1 0.58 10.5 0.0 2.3 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase GFO_IDH_MocA PF01408.17 gi|257386393|ref|YP_003176166.1| - 1.2e-24 87.1 0.1 2.1e-24 86.3 0.1 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold F420_oxidored PF03807.12 gi|257386393|ref|YP_003176166.1| - 0.012 16.0 0.0 0.041 14.2 0.0 1.9 1 1 1 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent HpcH_HpaI PF03328.9 gi|257386394|ref|YP_003176167.1| - 1.4e-45 154.9 1.6 1.7e-45 154.6 1.1 1.0 1 0 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family Asp_Glu_race PF01177.17 gi|257386394|ref|YP_003176167.1| - 0.0098 15.8 0.1 0.014 15.3 0.1 1.4 1 0 0 1 1 1 1 Asp/Glu/Hydantoin racemase Aldedh PF00171.17 gi|257386395|ref|YP_003176168.1| - 1.3e-137 458.9 0.2 1.5e-137 458.7 0.1 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family TPP_enzyme_N PF02776.13 gi|257386396|ref|YP_003176169.1| - 1.9e-60 203.2 0.3 2.7e-59 199.5 0.2 2.2 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|257386396|ref|YP_003176169.1| - 4.9e-43 146.1 0.0 9e-43 145.3 0.0 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain TPP_enzyme_C PF02775.16 gi|257386396|ref|YP_003176169.1| - 6.1e-37 126.5 0.0 2.8e-35 121.1 0.0 2.4 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PNTB PF02233.11 gi|257386396|ref|YP_003176169.1| - 0.036 12.8 0.0 0.056 12.2 0.0 1.2 1 0 0 1 1 1 0 NAD(P) transhydrogenase beta subunit DUF3828 PF12883.2 gi|257386396|ref|YP_003176169.1| - 0.11 12.4 0.4 0.22 11.4 0.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3828) SOG2 PF10428.4 gi|257386396|ref|YP_003176169.1| - 0.12 10.9 0.0 0.17 10.4 0.0 1.1 1 0 0 1 1 1 0 RAM signalling pathway protein Bac_luciferase PF00296.15 gi|257386397|ref|YP_003176170.1| - 6.3e-56 189.7 9.0 7.4e-56 189.5 6.3 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase IclR PF01614.13 gi|257386398|ref|YP_003176171.1| - 1.2e-30 105.7 0.0 2.1e-30 105.0 0.0 1.4 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|257386398|ref|YP_003176171.1| - 5.8e-07 29.0 0.0 1.8e-06 27.4 0.0 1.9 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|257386398|ref|YP_003176171.1| - 0.0002 20.6 0.0 0.00046 19.5 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_34 PF13601.1 gi|257386398|ref|YP_003176171.1| - 0.00076 19.4 0.0 0.0015 18.4 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|257386398|ref|YP_003176171.1| - 0.0026 17.3 0.0 0.0063 16.1 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family GAF_2 PF13185.1 gi|257386398|ref|YP_003176171.1| - 0.005 17.3 0.0 0.0091 16.4 0.0 1.4 1 0 0 1 1 1 1 GAF domain TrmB PF01978.14 gi|257386398|ref|YP_003176171.1| - 0.015 14.9 0.0 0.09 12.4 0.0 2.3 1 1 1 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|257386398|ref|YP_003176171.1| - 0.032 14.0 0.0 0.074 12.8 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_11 PF08279.7 gi|257386398|ref|YP_003176171.1| - 0.034 13.7 0.0 0.14 11.8 0.0 2.0 2 0 0 2 2 2 0 HTH domain HTH_27 PF13463.1 gi|257386398|ref|YP_003176171.1| - 0.073 13.4 0.0 0.27 11.5 0.0 2.0 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_40 PF14493.1 gi|257386398|ref|YP_003176171.1| - 0.083 13.1 0.0 0.17 12.0 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain MarR PF01047.17 gi|257386398|ref|YP_003176171.1| - 0.092 12.4 0.0 0.21 11.3 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_45 PF14947.1 gi|257386398|ref|YP_003176171.1| - 0.11 12.2 0.0 0.21 11.4 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix Soyouz_module PF14313.1 gi|257386398|ref|YP_003176171.1| - 0.12 11.9 0.5 4.1 7.0 0.1 2.6 2 1 0 2 2 2 0 N-terminal region of Paramyxovirinae phosphoprotein (P) GDPD PF03009.12 gi|257386399|ref|YP_003176172.1| - 1.2e-39 136.3 0.1 6.6e-38 130.6 0.1 2.0 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family GDPD_2 PF13653.1 gi|257386399|ref|YP_003176172.1| - 0.00076 19.5 0.5 0.0018 18.4 0.3 1.6 1 0 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family ThiG PF05690.9 gi|257386399|ref|YP_003176172.1| - 0.13 11.2 0.0 0.26 10.3 0.0 1.4 1 0 0 1 1 1 0 Thiazole biosynthesis protein ThiG ABC_tran PF00005.22 gi|257386400|ref|YP_003176173.1| - 4.3e-32 111.2 0.0 6.8e-32 110.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.5 gi|257386400|ref|YP_003176173.1| - 1.2e-11 44.4 0.2 1.6e-10 40.8 0.0 2.3 2 0 0 2 2 2 1 TOBE domain AAA_21 PF13304.1 gi|257386400|ref|YP_003176173.1| - 3.4e-08 33.7 0.0 0.0042 17.0 0.0 2.2 1 1 1 2 2 2 2 AAA domain TOBE PF03459.12 gi|257386400|ref|YP_003176173.1| - 2.2e-05 24.4 0.0 0.0003 20.8 0.0 2.7 3 0 0 3 3 3 1 TOBE domain Rad17 PF03215.10 gi|257386400|ref|YP_003176173.1| - 0.00037 19.3 0.0 0.00057 18.6 0.0 1.3 1 1 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA_22 PF13401.1 gi|257386400|ref|YP_003176173.1| - 0.00048 20.2 0.1 0.0011 19.0 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|257386400|ref|YP_003176173.1| - 0.00048 20.1 0.4 0.0015 18.5 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain SMC_N PF02463.14 gi|257386400|ref|YP_003176173.1| - 0.00083 18.6 0.0 0.0018 17.5 0.0 1.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_17 PF13207.1 gi|257386400|ref|YP_003176173.1| - 0.0033 18.2 0.0 0.01 16.6 0.0 1.7 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|257386400|ref|YP_003176173.1| - 0.0041 16.3 0.0 0.0078 15.4 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_33 PF13671.1 gi|257386400|ref|YP_003176173.1| - 0.0079 16.0 0.0 0.013 15.3 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|257386400|ref|YP_003176173.1| - 0.02 14.4 0.0 0.04 13.4 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Zeta_toxin PF06414.7 gi|257386400|ref|YP_003176173.1| - 0.032 13.3 0.0 0.07 12.2 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_10 PF12846.2 gi|257386400|ref|YP_003176173.1| - 0.036 13.4 0.0 0.069 12.5 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain AAA PF00004.24 gi|257386400|ref|YP_003176173.1| - 0.044 13.9 0.0 0.098 12.8 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) PmbA_TldD PF01523.11 gi|257386400|ref|YP_003176173.1| - 0.08 12.2 0.0 0.13 11.5 0.0 1.3 1 0 0 1 1 1 0 Putative modulator of DNA gyrase AAA_14 PF13173.1 gi|257386400|ref|YP_003176173.1| - 0.091 12.6 0.0 0.2 11.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|257386400|ref|YP_003176173.1| - 0.13 11.9 0.1 0.38 10.4 0.1 1.8 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) RNA_helicase PF00910.17 gi|257386400|ref|YP_003176173.1| - 0.2 11.8 0.3 0.73 10.0 0.1 1.9 1 1 1 2 2 2 0 RNA helicase BPD_transp_1 PF00528.17 gi|257386401|ref|YP_003176174.1| - 3e-15 56.2 17.1 3e-15 56.2 11.8 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DDE_Tnp_IS66_C PF13817.1 gi|257386401|ref|YP_003176174.1| - 0.013 15.4 0.0 0.025 14.5 0.0 1.4 1 0 0 1 1 1 0 IS66 C-terminal element BPD_transp_1 PF00528.17 gi|257386402|ref|YP_003176175.1| - 3e-12 46.4 15.2 3e-12 46.4 10.5 2.5 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_8 PF13416.1 gi|257386403|ref|YP_003176176.1| - 2.7e-42 145.4 4.0 3.3e-42 145.1 2.8 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|257386403|ref|YP_003176176.1| - 5.1e-26 92.1 2.8 6.9e-26 91.7 2.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|257386403|ref|YP_003176176.1| - 0.0011 18.3 0.0 0.047 13.0 0.0 2.3 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|257386403|ref|YP_003176176.1| - 0.0062 16.2 1.1 0.052 13.1 0.4 2.6 1 1 1 2 2 2 1 Bacterial extracellular solute-binding protein DUF4010 PF13194.1 gi|257386404|ref|YP_003176177.1| - 7.6e-47 159.3 23.3 7.6e-47 159.3 16.2 2.6 2 0 0 2 2 2 1 Domain of unknown function (DUF4010) MgtC PF02308.11 gi|257386404|ref|YP_003176177.1| - 7e-12 45.3 9.7 7e-12 45.3 6.7 2.8 3 2 0 3 3 3 1 MgtC family AAA_16 PF13191.1 gi|257386405|ref|YP_003176178.1| - 2e-08 34.4 4.6 7.3e-08 32.6 0.7 2.8 1 1 1 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|257386405|ref|YP_003176178.1| - 0.00042 20.4 0.0 0.001 19.1 0.0 1.6 1 0 0 1 1 1 1 AAA domain HTH_DeoR PF08220.7 gi|257386405|ref|YP_003176178.1| - 0.004 16.6 0.1 0.016 14.6 0.2 1.9 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain DUF815 PF05673.8 gi|257386405|ref|YP_003176178.1| - 0.0071 15.3 0.0 0.012 14.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_25 PF13481.1 gi|257386405|ref|YP_003176178.1| - 0.0095 15.3 0.1 0.038 13.3 0.0 2.2 1 1 0 1 1 1 1 AAA domain HTH_12 PF08461.5 gi|257386405|ref|YP_003176178.1| - 0.051 13.3 0.0 0.14 11.9 0.0 1.7 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_32 PF13565.1 gi|257386405|ref|YP_003176178.1| - 0.08 13.7 0.0 6 7.7 0.0 3.2 3 0 0 3 3 3 0 Homeodomain-like domain AAA_29 PF13555.1 gi|257386405|ref|YP_003176178.1| - 0.11 12.0 0.1 0.48 9.9 0.0 2.0 2 0 0 2 2 2 0 P-loop containing region of AAA domain EamA PF00892.15 gi|257386406|ref|YP_003176179.1| - 5e-13 49.1 14.0 5.8e-13 48.9 9.7 1.0 1 0 0 1 1 1 1 EamA-like transporter family EmrE PF13536.1 gi|257386406|ref|YP_003176179.1| - 0.0017 18.5 8.0 0.0017 18.5 5.5 2.1 1 1 1 2 2 2 1 Multidrug resistance efflux transporter UPF0546 PF10639.4 gi|257386406|ref|YP_003176179.1| - 0.0077 16.0 1.6 0.012 15.3 1.1 1.4 1 0 0 1 1 1 1 Uncharacterised protein family UPF0546 Sugar_transport PF06800.7 gi|257386406|ref|YP_003176179.1| - 0.019 14.0 6.9 0.023 13.7 4.8 1.2 1 0 0 1 1 1 0 Sugar transport protein TPT PF03151.11 gi|257386406|ref|YP_003176179.1| - 0.022 14.3 10.4 0.067 12.8 7.2 1.7 1 1 0 1 1 1 0 Triose-phosphate Transporter family Eno-Rase_NADH_b PF12242.3 gi|257386406|ref|YP_003176179.1| - 0.6 9.9 4.1 5.2 6.9 0.1 2.5 2 0 0 2 2 2 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase Multi_Drug_Res PF00893.14 gi|257386406|ref|YP_003176179.1| - 6 7.4 10.5 0.21 12.0 0.6 2.6 1 1 1 2 2 2 0 Small Multidrug Resistance protein AhpC-TSA PF00578.16 gi|257386407|ref|YP_003176180.1| - 5.1e-16 58.4 0.0 8e-16 57.8 0.0 1.3 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|257386407|ref|YP_003176180.1| - 1.6e-10 40.7 0.0 2.1e-10 40.3 0.0 1.2 1 0 0 1 1 1 1 Redoxin HemY_N PF07219.8 gi|257386407|ref|YP_003176180.1| - 0.0039 16.7 1.3 0.0062 16.0 0.0 1.9 2 0 0 2 2 2 1 HemY protein N-terminus MOSC PF03473.12 gi|257386408|ref|YP_003176181.1| - 3.7e-19 68.5 0.2 8.2e-18 64.1 0.1 2.2 1 1 0 1 1 1 1 MOSC domain MOSC_N PF03476.11 gi|257386408|ref|YP_003176181.1| - 3.2e-15 55.9 0.3 5.9e-15 55.0 0.2 1.5 1 1 0 1 1 1 1 MOSC N-terminal beta barrel domain CSD PF00313.17 gi|257386410|ref|YP_003176183.1| - 6.4e-20 70.6 0.4 7.1e-20 70.5 0.3 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain S1-like PF14444.1 gi|257386410|ref|YP_003176183.1| - 0.014 15.0 1.1 0.021 14.5 0.8 1.4 1 1 0 1 1 1 0 S1-like OB_RNB PF08206.6 gi|257386410|ref|YP_003176183.1| - 0.036 13.5 2.6 0.054 13.0 1.8 1.4 1 0 0 1 1 1 0 Ribonuclease B OB domain CusF_Ec PF11604.3 gi|257386410|ref|YP_003176183.1| - 0.094 12.5 0.1 0.14 12.0 0.1 1.4 1 1 0 1 1 1 0 Copper binding periplasmic protein CusF DUF2648 PF10855.3 gi|257386411|ref|YP_003176184.1| - 2.7 7.4 4.2 5.7 6.4 2.9 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2648) Bac_luciferase PF00296.15 gi|257386412|ref|YP_003176185.1| - 4.6e-59 200.0 15.8 5.9e-59 199.6 11.0 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase GFO_IDH_MocA PF01408.17 gi|257386412|ref|YP_003176185.1| - 0.12 12.9 0.0 0.3 11.5 0.0 1.6 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold F420_ligase PF01996.11 gi|257386413|ref|YP_003176186.1| - 4.2e-63 212.4 0.2 4.7e-63 212.2 0.1 1.0 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase ACC_epsilon PF13822.1 gi|257386414|ref|YP_003176187.1| - 0.039 14.3 3.3 0.039 14.3 2.3 1.9 2 0 0 2 2 2 0 Acyl-CoA carboxylase epsilon subunit HTH_20 PF12840.2 gi|257386415|ref|YP_003176188.1| - 2.5e-08 33.6 0.0 3.4e-07 29.9 0.0 2.3 2 0 0 2 2 2 1 Helix-turn-helix domain GFA PF04828.9 gi|257386415|ref|YP_003176188.1| - 0.0085 16.0 0.7 0.66 9.9 0.1 2.6 2 1 1 3 3 3 2 Glutathione-dependent formaldehyde-activating enzyme HTH_5 PF01022.15 gi|257386415|ref|YP_003176188.1| - 0.02 14.5 0.0 0.045 13.4 0.0 1.6 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family GCC2_GCC3 PF07699.8 gi|257386415|ref|YP_003176188.1| - 0.069 12.7 2.3 1 8.9 0.4 2.9 3 0 0 3 3 3 0 GCC2 and GCC3 Lar_restr_allev PF14354.1 gi|257386415|ref|YP_003176188.1| - 0.22 11.8 5.5 0.15 12.4 0.5 2.4 2 1 0 2 2 2 0 Restriction alleviation protein Lar zinc_ribbon_6 PF14599.1 gi|257386415|ref|YP_003176188.1| - 1.1 9.1 3.0 0.76 9.6 0.1 2.2 2 1 0 2 2 2 0 Zinc-ribbon Prim_Zn_Ribbon PF08273.7 gi|257386415|ref|YP_003176188.1| - 4.5 7.4 8.0 7.9 6.6 0.0 3.0 3 0 0 3 3 3 0 Zinc-binding domain of primase-helicase Metallophos_2 PF12850.2 gi|257386416|ref|YP_003176189.1| - 2e-25 89.4 0.2 2.3e-25 89.2 0.1 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|257386416|ref|YP_003176189.1| - 0.11 11.9 0.6 8.1 5.7 0.1 2.3 2 1 0 2 2 2 0 Calcineurin-like phosphoesterase Chon_Sulph_att PF06566.6 gi|257386416|ref|YP_003176189.1| - 0.31 10.6 3.1 0.41 10.2 2.2 1.1 1 0 0 1 1 1 0 Chondroitin sulphate attachment domain 7TMR-DISM_7TM PF07695.6 gi|257386417|ref|YP_003176190.1| - 0.032 13.9 7.0 0.035 13.7 4.9 1.0 1 0 0 1 1 1 0 7TM diverse intracellular signalling MARVEL PF01284.18 gi|257386417|ref|YP_003176190.1| - 0.038 13.7 10.5 0.047 13.5 7.3 1.1 1 0 0 1 1 1 0 Membrane-associating domain Tetraspannin PF00335.15 gi|257386417|ref|YP_003176190.1| - 8.9 5.5 7.2 4.1 6.6 3.9 1.4 1 1 0 1 1 1 0 Tetraspanin family NosL PF05573.7 gi|257386418|ref|YP_003176191.1| - 2.8e-32 111.4 0.0 3.4e-32 111.2 0.0 1.0 1 0 0 1 1 1 1 NosL MLTD_N PF06474.7 gi|257386418|ref|YP_003176191.1| - 0.52 10.5 3.3 1.3 9.3 2.3 1.6 1 0 0 1 1 1 0 MltD lipid attachment motif HTH_20 PF12840.2 gi|257386419|ref|YP_003176192.1| - 4.8e-13 48.7 0.2 1.3e-05 24.8 0.1 2.4 2 0 0 2 2 2 2 Helix-turn-helix domain MarR_2 PF12802.2 gi|257386419|ref|YP_003176192.1| - 5e-10 38.8 2.5 0.00019 21.0 0.1 2.8 3 0 0 3 3 3 2 MarR family HTH_24 PF13412.1 gi|257386419|ref|YP_003176192.1| - 5.1e-10 38.5 0.0 0.00041 19.6 0.0 2.3 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|257386419|ref|YP_003176192.1| - 8.6e-10 38.1 0.0 1.9e-05 24.2 0.0 2.2 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|257386419|ref|YP_003176192.1| - 3.2e-08 33.1 0.0 0.00068 19.2 0.0 2.3 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|257386419|ref|YP_003176192.1| - 9.1e-06 25.1 0.5 0.022 14.3 0.0 3.1 3 0 0 3 3 3 2 IclR helix-turn-helix domain HTH_27 PF13463.1 gi|257386419|ref|YP_003176192.1| - 1.9e-05 24.8 0.1 0.057 13.7 0.0 2.4 2 0 0 2 2 2 2 Winged helix DNA-binding domain HTH_34 PF13601.1 gi|257386419|ref|YP_003176192.1| - 0.00042 20.2 0.0 0.041 13.9 0.0 2.2 2 0 0 2 2 2 1 Winged helix DNA-binding domain MarR PF01047.17 gi|257386419|ref|YP_003176192.1| - 0.0013 18.4 0.0 0.75 9.5 0.0 2.5 2 0 0 2 2 2 2 MarR family HTH_11 PF08279.7 gi|257386419|ref|YP_003176192.1| - 0.016 14.8 0.0 0.061 12.9 0.0 1.9 2 0 0 2 2 2 0 HTH domain HTH_10 PF04967.7 gi|257386419|ref|YP_003176192.1| - 0.042 13.4 0.0 1.3 8.6 0.0 2.4 2 0 0 2 2 2 0 HTH DNA binding domain Rrf2 PF02082.15 gi|257386419|ref|YP_003176192.1| - 0.056 13.5 0.1 1.4 9.0 0.0 2.1 2 0 0 2 2 2 0 Transcriptional regulator ABC2_membrane_2 PF12679.2 gi|257386420|ref|YP_003176193.1| - 0.00011 21.1 15.9 0.00011 21.1 11.0 2.1 1 1 1 2 2 2 1 ABC-2 family transporter protein HrcA_DNA-bdg PF03444.10 gi|257386420|ref|YP_003176193.1| - 0.12 11.7 0.0 0.28 10.6 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding ABC2_membrane_3 PF12698.2 gi|257386420|ref|YP_003176193.1| - 0.35 9.8 8.1 0.42 9.6 5.6 1.3 1 0 0 1 1 1 0 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|257386420|ref|YP_003176193.1| - 6.1 5.9 11.9 1.4 8.0 5.4 2.0 2 1 0 2 2 2 0 ABC-2 type transporter ABC_tran PF00005.22 gi|257386421|ref|YP_003176194.1| - 3.1e-27 95.5 0.0 3.9e-27 95.2 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|257386421|ref|YP_003176194.1| - 4.1e-20 72.9 0.0 1.9e-10 41.2 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|257386421|ref|YP_003176194.1| - 3.3e-07 29.7 0.0 0.0008 18.7 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|257386421|ref|YP_003176194.1| - 9.9e-07 28.2 0.1 2e-06 27.2 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|257386421|ref|YP_003176194.1| - 3.6e-06 27.4 0.1 4.7e-06 27.0 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|257386421|ref|YP_003176194.1| - 0.00024 21.1 0.0 0.0004 20.4 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.1 gi|257386421|ref|YP_003176194.1| - 0.0026 16.9 0.0 0.091 11.7 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_33 PF13671.1 gi|257386421|ref|YP_003176194.1| - 0.0055 16.5 0.0 0.011 15.6 0.0 1.8 1 1 0 1 1 1 1 AAA domain cobW PF02492.14 gi|257386421|ref|YP_003176194.1| - 0.01 15.2 0.4 0.044 13.2 0.2 1.9 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_22 PF13401.1 gi|257386421|ref|YP_003176194.1| - 0.015 15.4 0.0 0.02 15.0 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|257386421|ref|YP_003176194.1| - 0.02 14.3 0.0 0.051 12.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|257386421|ref|YP_003176194.1| - 0.031 13.4 0.0 0.045 12.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|257386421|ref|YP_003176194.1| - 0.033 15.0 0.0 0.04 14.7 0.0 1.4 1 1 0 1 1 1 0 AAA domain DUF3584 PF12128.3 gi|257386421|ref|YP_003176194.1| - 0.049 10.9 0.1 0.065 10.5 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_19 PF13245.1 gi|257386421|ref|YP_003176194.1| - 0.058 13.1 2.9 0.11 12.2 0.1 2.7 2 1 0 2 2 2 0 Part of AAA domain NACHT PF05729.7 gi|257386421|ref|YP_003176194.1| - 0.1 12.2 0.1 0.17 11.5 0.1 1.3 1 0 0 1 1 1 0 NACHT domain AAA_13 PF13166.1 gi|257386421|ref|YP_003176194.1| - 0.15 10.4 0.0 0.54 8.6 0.0 1.7 2 0 0 2 2 2 0 AAA domain NosD PF05048.8 gi|257386422|ref|YP_003176195.1| - 9e-27 93.7 0.1 1.8e-26 92.7 0.1 1.4 1 1 0 1 1 1 1 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|257386422|ref|YP_003176195.1| - 9.4e-16 57.9 7.0 3.7e-13 49.5 3.1 2.4 1 1 1 2 2 2 2 Right handed beta helix region NosL PF05573.7 gi|257386422|ref|YP_003176195.1| - 9.6e-12 44.8 0.0 1.7e-11 44.0 0.0 1.4 1 0 0 1 1 1 1 NosL Myb_DNA-binding PF00249.26 gi|257386423|ref|YP_003176196.1| - 0.13 12.3 0.0 0.37 10.8 0.0 1.8 2 0 0 2 2 2 0 Myb-like DNA-binding domain PhoU PF01895.14 gi|257386424|ref|YP_003176197.1| - 1.6e-14 54.1 1.0 7.6e-08 32.6 0.1 2.4 2 0 0 2 2 2 2 PhoU domain Antitoxin-MazE PF04014.13 gi|257386424|ref|YP_003176197.1| - 2.8e-06 26.9 0.0 7e-06 25.6 0.0 1.7 1 0 0 1 1 1 1 Antidote-toxin recognition MazE Vg_Tdu PF07545.9 gi|257386424|ref|YP_003176197.1| - 0.055 12.9 0.6 0.12 11.7 0.0 1.8 2 0 0 2 2 2 0 Vestigial/Tondu family ABC_tran PF00005.22 gi|257386425|ref|YP_003176198.1| - 3.6e-31 108.2 0.0 6.2e-31 107.5 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|257386425|ref|YP_003176198.1| - 3.1e-13 50.3 0.0 4.5e-07 30.1 0.0 2.2 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|257386425|ref|YP_003176198.1| - 6e-09 35.4 0.0 2.1e-07 30.3 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|257386425|ref|YP_003176198.1| - 1.9e-05 24.7 0.0 4.3e-05 23.6 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|257386425|ref|YP_003176198.1| - 0.00018 20.6 0.0 0.062 12.3 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain DUF258 PF03193.11 gi|257386425|ref|YP_003176198.1| - 0.00078 18.6 0.0 0.0015 17.7 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|257386425|ref|YP_003176198.1| - 0.0015 18.0 0.0 0.004 16.6 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|257386425|ref|YP_003176198.1| - 0.0028 17.6 1.6 0.013 15.4 1.1 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.1 gi|257386425|ref|YP_003176198.1| - 0.0075 16.1 0.0 0.019 14.8 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.1 gi|257386425|ref|YP_003176198.1| - 0.013 15.7 0.0 0.037 14.3 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|257386425|ref|YP_003176198.1| - 0.013 15.1 0.0 4.7 7.0 0.0 2.6 3 0 0 3 3 2 0 Part of AAA domain DeoRC PF00455.17 gi|257386425|ref|YP_003176198.1| - 0.016 14.8 0.0 0.03 13.9 0.0 1.4 1 0 0 1 1 1 0 DeoR C terminal sensor domain AAA_10 PF12846.2 gi|257386425|ref|YP_003176198.1| - 0.026 13.9 0.3 0.13 11.6 0.0 2.0 1 1 1 2 2 2 0 AAA-like domain AAA_25 PF13481.1 gi|257386425|ref|YP_003176198.1| - 0.043 13.2 0.1 0.33 10.3 0.0 2.2 2 1 0 2 2 2 0 AAA domain ABC_ATPase PF09818.4 gi|257386425|ref|YP_003176198.1| - 0.072 11.6 0.0 6 5.3 0.0 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class Rad17 PF03215.10 gi|257386425|ref|YP_003176198.1| - 0.079 11.6 0.0 0.11 11.1 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_17 PF13207.1 gi|257386425|ref|YP_003176198.1| - 0.097 13.4 0.9 0.49 11.2 0.6 2.4 1 1 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.17 gi|257386426|ref|YP_003176199.1| - 3.3e-21 75.6 13.8 3.3e-21 75.6 9.5 3.9 2 1 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component MASE2 PF05230.6 gi|257386426|ref|YP_003176199.1| - 0.61 10.1 11.0 0.14 12.1 0.7 3.9 4 0 0 4 4 4 0 MASE2 domain BPD_transp_1 PF00528.17 gi|257386427|ref|YP_003176200.1| - 5.5e-16 58.6 13.5 5.5e-16 58.6 9.4 2.7 1 1 2 3 3 3 2 Binding-protein-dependent transport system inner membrane component PBP_like_2 PF12849.2 gi|257386428|ref|YP_003176201.1| - 3.1e-27 95.7 0.1 7.6e-27 94.4 0.1 1.5 1 1 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.2 gi|257386428|ref|YP_003176201.1| - 5.6e-10 38.4 0.0 9.8e-10 37.6 0.0 1.4 1 1 0 1 1 1 1 PBP superfamily domain TAT_signal PF10518.4 gi|257386428|ref|YP_003176201.1| - 0.0031 17.3 2.3 0.0056 16.5 1.6 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence MutS_V PF00488.16 gi|257386429|ref|YP_003176202.1| - 1e-91 306.5 0.0 1.5e-91 306.0 0.0 1.2 1 0 0 1 1 1 1 MutS domain V MutS_III PF05192.13 gi|257386429|ref|YP_003176202.1| - 2.6e-37 128.6 3.8 4.9e-37 127.7 2.7 1.5 1 0 0 1 1 1 1 MutS domain III MutS_I PF01624.15 gi|257386429|ref|YP_003176202.1| - 1.3e-36 125.0 0.0 2.8e-36 123.9 0.0 1.6 1 0 0 1 1 1 1 MutS domain I MutS_IV PF05190.13 gi|257386429|ref|YP_003176202.1| - 2.3e-29 101.4 0.1 4.5e-29 100.4 0.0 1.5 1 0 0 1 1 1 1 MutS family domain IV MutS_II PF05188.12 gi|257386429|ref|YP_003176202.1| - 3.8e-14 52.9 0.0 1.2e-13 51.2 0.0 1.9 1 0 0 1 1 1 1 MutS domain II AAA_29 PF13555.1 gi|257386429|ref|YP_003176202.1| - 0.0075 15.7 0.0 0.018 14.5 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain Thioredoxin PF00085.15 gi|257386430|ref|YP_003176203.1| - 1.6e-12 47.0 0.0 1.8e-12 46.8 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_3 PF13192.1 gi|257386430|ref|YP_003176203.1| - 1.1e-05 25.0 0.0 1.6e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin domain DUF836 PF05768.9 gi|257386430|ref|YP_003176203.1| - 4.9e-05 23.5 0.0 5.7e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Thioredoxin_2 PF13098.1 gi|257386430|ref|YP_003176203.1| - 0.00045 20.3 0.0 0.041 14.0 0.0 2.0 1 1 0 1 1 1 1 Thioredoxin-like domain TraF PF13728.1 gi|257386430|ref|YP_003176203.1| - 0.022 14.2 0.0 0.075 12.5 0.0 1.7 1 1 0 1 1 1 0 F plasmid transfer operon protein Thioredoxin_7 PF13899.1 gi|257386430|ref|YP_003176203.1| - 0.035 14.1 0.0 0.1 12.6 0.0 1.9 1 1 0 1 1 1 0 Thioredoxin-like TrbC_Ftype PF09673.5 gi|257386430|ref|YP_003176203.1| - 0.051 13.1 0.0 0.056 13.0 0.0 1.1 1 0 0 1 1 1 0 Type-F conjugative transfer system pilin assembly protein Fer4_21 PF14697.1 gi|257386430|ref|YP_003176203.1| - 0.14 12.0 0.0 0.19 11.6 0.0 1.2 1 0 0 1 1 1 0 4Fe-4S dicluster domain zf-HC2 PF13490.1 gi|257386430|ref|YP_003176203.1| - 0.17 11.8 1.6 0.75 9.8 0.5 2.1 2 0 0 2 2 2 0 Putative zinc-finger DSBA PF01323.15 gi|257386432|ref|YP_003176205.1| - 3.3e-37 127.9 0.0 3.8e-37 127.7 0.0 1.0 1 0 0 1 1 1 1 DSBA-like thioredoxin domain Thioredoxin_4 PF13462.1 gi|257386432|ref|YP_003176205.1| - 3.1e-13 50.0 0.0 7.3e-11 42.3 0.0 2.1 1 1 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|257386432|ref|YP_003176205.1| - 3.9e-06 27.0 0.4 0.00019 21.6 0.2 2.2 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_3 PF13192.1 gi|257386432|ref|YP_003176205.1| - 0.067 13.0 0.0 2.4 8.0 0.0 2.4 2 0 0 2 2 2 0 Thioredoxin domain Thioredoxin_5 PF13743.1 gi|257386432|ref|YP_003176205.1| - 0.13 11.8 0.0 0.86 9.1 0.0 2.1 1 1 2 3 3 3 0 Thioredoxin Phos_pyr_kin PF08543.7 gi|257386435|ref|YP_003176208.1| - 2.1e-79 266.2 11.7 2.8e-79 265.7 8.1 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase Aldolase_2 PF10120.4 gi|257386435|ref|YP_003176208.1| - 3.2e-17 62.4 0.0 5.5e-17 61.6 0.0 1.4 1 0 0 1 1 1 1 Putative aldolase PfkB PF00294.19 gi|257386435|ref|YP_003176208.1| - 1.1e-10 41.2 10.0 1.7e-10 40.5 7.0 1.2 1 0 0 1 1 1 1 pfkB family carbohydrate kinase CARDB PF07705.6 gi|257386436|ref|YP_003176209.1| - 1.4e-05 25.0 1.5 0.0026 17.7 0.2 2.7 2 0 0 2 2 2 2 CARDB Peptidase_MA_2 PF13485.1 gi|257386436|ref|YP_003176209.1| - 0.00018 21.5 0.8 0.00037 20.5 0.5 1.5 1 0 0 1 1 1 1 Peptidase MA superfamily MutS_V PF00488.16 gi|257386437|ref|YP_003176210.1| - 1.7e-97 325.4 0.0 3.3e-97 324.5 0.0 1.5 1 0 0 1 1 1 1 MutS domain V MutS_III PF05192.13 gi|257386437|ref|YP_003176210.1| - 5.3e-43 147.1 4.8 8.9e-42 143.1 3.5 2.2 2 0 0 2 2 2 1 MutS domain III MutS_I PF01624.15 gi|257386437|ref|YP_003176210.1| - 4.8e-27 94.2 0.0 8.6e-27 93.4 0.0 1.4 1 0 0 1 1 1 1 MutS domain I MutS_II PF05188.12 gi|257386437|ref|YP_003176210.1| - 1.4e-21 76.9 0.0 4.6e-21 75.3 0.0 1.9 1 0 0 1 1 1 1 MutS domain II MutS_IV PF05190.13 gi|257386437|ref|YP_003176210.1| - 2e-21 75.9 0.5 4e-21 74.9 0.4 1.5 1 0 0 1 1 1 1 MutS family domain IV AAA_29 PF13555.1 gi|257386437|ref|YP_003176210.1| - 0.043 13.3 0.0 0.096 12.2 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_14 PF13173.1 gi|257386437|ref|YP_003176210.1| - 0.16 11.8 0.0 0.55 10.1 0.0 1.9 1 1 0 1 1 1 0 AAA domain Acetyltransf_1 PF00583.19 gi|257386438|ref|YP_003176211.1| - 9.8e-15 54.3 0.0 1.7e-14 53.5 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.1 gi|257386438|ref|YP_003176211.1| - 3.5e-12 46.6 0.0 4.7e-12 46.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|257386438|ref|YP_003176211.1| - 1.4e-10 41.3 0.0 1.9e-10 40.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|257386438|ref|YP_003176211.1| - 2.9e-10 39.7 0.0 4.8e-10 39.0 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_7 PF13508.1 gi|257386438|ref|YP_003176211.1| - 1.3e-07 31.6 0.0 2.2e-07 30.9 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|257386438|ref|YP_003176211.1| - 0.00026 20.9 0.0 0.00037 20.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|257386438|ref|YP_003176211.1| - 0.0016 18.3 0.0 0.002 18.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|257386438|ref|YP_003176211.1| - 0.0024 17.7 0.0 0.0049 16.7 0.0 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|257386438|ref|YP_003176211.1| - 0.018 14.9 0.1 0.032 14.1 0.1 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase AAA_19 PF13245.1 gi|257386438|ref|YP_003176211.1| - 0.075 12.8 0.2 0.15 11.8 0.1 1.4 1 0 0 1 1 1 0 Part of AAA domain Metallophos_2 PF12850.2 gi|257386439|ref|YP_003176212.1| - 9.1e-06 25.5 3.8 5.2e-05 23.1 2.6 1.9 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|257386439|ref|YP_003176212.1| - 0.0077 15.6 10.0 0.047 13.0 6.9 2.0 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|257386440|ref|YP_003176213.1| - 1e-31 109.8 0.0 1.3e-31 109.5 0.0 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|257386440|ref|YP_003176213.1| - 9.9e-10 38.1 0.3 1.8e-09 37.2 0.2 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.1 gi|257386440|ref|YP_003176213.1| - 0.0069 15.5 0.0 0.041 13.0 0.0 2.0 2 1 0 2 2 2 1 Metallophosphoesterase, calcineurin superfamily DUF3262 PF11660.3 gi|257386441|ref|YP_003176214.1| - 0.16 12.0 0.9 0.2 11.7 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3262) DoxX PF07681.7 gi|257386442|ref|YP_003176215.1| - 9.4e-11 41.9 7.1 9.4e-11 41.9 4.9 1.6 1 1 0 1 1 1 1 DoxX DoxD PF04173.8 gi|257386442|ref|YP_003176215.1| - 2.7e-06 27.1 5.8 0.00033 20.3 1.4 2.1 2 0 0 2 2 2 2 TQO small subunit DoxD Peptidase_M48 PF01435.13 gi|257386444|ref|YP_003176217.1| - 4.8e-32 111.3 0.0 6.6e-32 110.8 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|257386444|ref|YP_003176217.1| - 3.7e-06 26.1 0.0 1.9e-05 23.8 0.0 1.9 2 0 0 2 2 2 1 BlaR1 peptidase M56 SprT-like PF10263.4 gi|257386444|ref|YP_003176217.1| - 0.025 14.2 0.0 0.036 13.7 0.0 1.2 1 0 0 1 1 1 0 SprT-like family Peptidase_MA_2 PF13485.1 gi|257386444|ref|YP_003176217.1| - 0.073 13.1 0.0 0.11 12.5 0.0 1.5 1 0 0 1 1 1 0 Peptidase MA superfamily DUF4345 PF14248.1 gi|257386445|ref|YP_003176218.1| - 0.015 14.7 2.2 0.025 14.0 1.6 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4345) DUF4574 PF15141.1 gi|257386445|ref|YP_003176218.1| - 0.11 12.2 0.2 0.14 11.8 0.1 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4574) DUF2065 PF09838.4 gi|257386445|ref|YP_003176218.1| - 0.17 11.6 3.7 7.5 6.3 0.2 2.4 2 1 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2065) MutL_C PF08676.6 gi|257386447|ref|YP_003176220.1| - 1.4e-39 134.9 0.0 2.2e-39 134.3 0.0 1.3 1 0 0 1 1 1 1 MutL C terminal dimerisation domain DNA_mis_repair PF01119.14 gi|257386447|ref|YP_003176220.1| - 8.5e-35 118.7 0.0 1.3e-34 118.1 0.0 1.3 1 0 0 1 1 1 1 DNA mismatch repair protein, C-terminal domain HATPase_c_3 PF13589.1 gi|257386447|ref|YP_003176220.1| - 3e-11 43.1 0.0 6.4e-11 42.0 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.21 gi|257386447|ref|YP_003176220.1| - 5.2e-11 42.2 0.3 1.3e-10 40.9 0.2 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CENP-X PF09415.5 gi|257386447|ref|YP_003176220.1| - 0.032 14.0 0.2 0.31 10.8 0.1 2.6 2 0 0 2 2 2 0 CENP-S associating Centromere protein X PfkB PF00294.19 gi|257386448|ref|YP_003176221.1| - 9.1e-29 100.5 0.1 1.1e-28 100.2 0.1 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Beta-Casp PF10996.3 gi|257386449|ref|YP_003176222.1| - 2.7e-20 72.5 0.0 4.5e-20 71.8 0.0 1.3 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B PF00753.22 gi|257386449|ref|YP_003176222.1| - 2e-17 63.5 3.4 4.3e-17 62.3 2.2 1.6 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|257386449|ref|YP_003176222.1| - 5.7e-12 45.2 0.0 1.4e-11 44.0 0.0 1.7 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|257386449|ref|YP_003176222.1| - 3.1e-09 36.6 0.1 5.9e-09 35.7 0.1 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|257386449|ref|YP_003176222.1| - 0.011 15.5 0.3 0.026 14.2 0.2 1.8 1 1 0 1 1 1 0 Beta-lactamase superfamily domain Laminin_N PF00055.12 gi|257386449|ref|YP_003176222.1| - 0.049 12.6 0.0 0.072 12.0 0.0 1.2 1 0 0 1 1 1 0 Laminin N-terminal (Domain VI) Rhodanese PF00581.15 gi|257386449|ref|YP_003176222.1| - 0.071 13.4 0.0 0.29 11.4 0.0 1.9 2 0 0 2 2 2 0 Rhodanese-like domain TAT_signal PF10518.4 gi|257386450|ref|YP_003176223.1| - 0.24 11.5 0.2 0.24 11.5 0.1 2.2 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence Cupin_2 PF07883.6 gi|257386452|ref|YP_003176225.1| - 6.9e-19 67.1 0.1 8.4e-19 66.8 0.1 1.1 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|257386452|ref|YP_003176225.1| - 3.7e-09 36.3 0.0 5.3e-09 35.8 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_1 PF00190.17 gi|257386452|ref|YP_003176225.1| - 3.1e-07 29.9 0.0 4e-07 29.5 0.0 1.2 1 0 0 1 1 1 1 Cupin MannoseP_isomer PF01050.13 gi|257386452|ref|YP_003176225.1| - 7.6e-06 25.6 0.0 8.4e-06 25.4 0.0 1.0 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Cupin_6 PF12852.2 gi|257386452|ref|YP_003176225.1| - 1.4e-05 24.7 0.0 1.5e-05 24.7 0.0 1.1 1 0 0 1 1 1 1 Cupin Cupin_3 PF05899.7 gi|257386452|ref|YP_003176225.1| - 0.0002 20.6 0.0 0.00029 20.1 0.0 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF861) Ectoine_synth PF06339.7 gi|257386452|ref|YP_003176225.1| - 0.022 14.6 0.0 0.025 14.4 0.0 1.2 1 0 0 1 1 1 0 Ectoine synthase DUF2345 PF10106.4 gi|257386452|ref|YP_003176225.1| - 0.028 14.0 0.1 0.033 13.8 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2345) TrbE PF11100.3 gi|257386453|ref|YP_003176226.1| - 0.055 13.3 1.3 2.9 7.8 0.1 2.8 3 0 0 3 3 3 0 Conjugal transfer protein TrbE DUF4466 PF14725.1 gi|257386453|ref|YP_003176226.1| - 0.13 11.4 0.0 0.19 10.9 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4466) Pyr_redox_2 PF07992.9 gi|257386454|ref|YP_003176227.1| - 7e-28 97.8 7.9 7.7e-15 55.3 0.0 3.4 2 1 1 3 3 3 3 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|257386454|ref|YP_003176227.1| - 1e-21 77.1 1.2 1.7e-18 66.7 0.4 3.2 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|257386454|ref|YP_003176227.1| - 5.3e-11 42.5 0.0 6.5e-10 39.0 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DAO PF01266.19 gi|257386454|ref|YP_003176227.1| - 3.9e-07 29.3 9.9 0.039 12.8 0.4 4.2 4 0 0 4 4 4 3 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|257386454|ref|YP_003176227.1| - 8.2e-07 28.9 2.0 0.043 13.8 0.3 3.2 3 0 0 3 3 3 2 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|257386454|ref|YP_003176227.1| - 6.5e-06 24.8 0.4 0.35 9.2 0.0 3.8 3 1 1 4 4 4 3 HI0933-like protein 3HCDH_N PF02737.13 gi|257386454|ref|YP_003176227.1| - 0.00026 20.7 0.7 0.00051 19.7 0.1 1.7 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox_3 PF13738.1 gi|257386454|ref|YP_003176227.1| - 0.0012 18.8 0.0 0.0041 17.2 0.0 2.0 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.9 gi|257386454|ref|YP_003176227.1| - 0.0089 15.4 0.3 0.018 14.4 0.1 1.6 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain GIDA PF01134.17 gi|257386454|ref|YP_003176227.1| - 0.063 12.1 1.3 0.1 11.4 0.2 1.8 2 0 0 2 2 2 0 Glucose inhibited division protein A Lycopene_cycl PF05834.7 gi|257386454|ref|YP_003176227.1| - 0.14 11.0 0.2 23 3.7 0.0 2.9 2 1 1 3 3 3 0 Lycopene cyclase protein Rieske PF00355.21 gi|257386455|ref|YP_003176228.1| - 6.1e-09 35.3 0.2 9e-09 34.7 0.2 1.2 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain DUF2874 PF11396.3 gi|257386456|ref|YP_003176229.1| - 0.15 12.0 2.6 0.74 9.8 1.8 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF2874) Fe_dep_repress PF01325.14 gi|257386457|ref|YP_003176230.1| - 5.9e-14 51.7 0.1 9.3e-14 51.1 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.2 gi|257386457|ref|YP_003176230.1| - 7.7e-06 25.4 0.0 1.2e-05 24.8 0.0 1.4 1 0 0 1 1 1 1 MarR family Fe_dep_repr_C PF02742.10 gi|257386457|ref|YP_003176230.1| - 4.1e-05 23.1 0.1 6.4e-05 22.5 0.1 1.3 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain HTH_27 PF13463.1 gi|257386457|ref|YP_003176230.1| - 0.00042 20.5 0.0 0.0007 19.8 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.17 gi|257386457|ref|YP_003176230.1| - 0.0018 17.9 0.0 0.0033 17.1 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.1 gi|257386457|ref|YP_003176230.1| - 0.0075 16.0 0.0 0.013 15.2 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain TrmB PF01978.14 gi|257386457|ref|YP_003176230.1| - 0.015 14.9 0.0 0.029 14.0 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|257386457|ref|YP_003176230.1| - 0.033 13.7 0.0 0.056 13.0 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|257386457|ref|YP_003176230.1| - 0.056 12.8 0.0 0.091 12.1 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding LexA_DNA_bind PF01726.11 gi|257386457|ref|YP_003176230.1| - 0.073 12.6 0.0 0.15 11.6 0.0 1.5 1 0 0 1 1 1 0 LexA DNA binding domain Ferritin PF00210.19 gi|257386459|ref|YP_003176232.1| - 4.2e-26 91.4 4.6 5.2e-26 91.0 3.2 1.1 1 0 0 1 1 1 1 Ferritin-like domain Tautomerase PF01361.16 gi|257386459|ref|YP_003176232.1| - 0.014 14.9 0.0 0.041 13.4 0.0 1.9 1 0 0 1 1 1 0 Tautomerase enzyme DUF2383 PF09537.5 gi|257386459|ref|YP_003176232.1| - 0.036 14.3 0.2 0.036 14.3 0.1 2.3 2 2 0 2 2 2 0 Domain of unknown function (DUF2383) DUF626 PF04776.7 gi|257386459|ref|YP_003176232.1| - 0.11 12.7 0.0 0.22 11.8 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF626) ERM PF00769.14 gi|257386459|ref|YP_003176232.1| - 0.15 11.5 2.0 0.19 11.2 1.4 1.3 1 1 0 1 1 1 0 Ezrin/radixin/moesin family NPV_P10 PF05531.7 gi|257386459|ref|YP_003176232.1| - 0.15 12.3 0.5 14 6.0 0.0 2.6 2 1 0 2 2 2 0 Nucleopolyhedrovirus P10 protein GCN5L1 PF06320.8 gi|257386459|ref|YP_003176232.1| - 0.7 9.7 5.7 0.23 11.2 0.6 2.4 2 1 1 3 3 3 0 GCN5-like protein 1 (GCN5L1) RHH_1 PF01402.16 gi|257386460|ref|YP_003176233.1| - 2.5e-05 23.9 1.6 3.2e-05 23.6 1.1 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family DAO PF01266.19 gi|257386462|ref|YP_003176235.1| - 3.1e-12 46.0 7.7 3.7e-07 29.3 0.3 2.0 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|257386462|ref|YP_003176235.1| - 3.9e-09 36.6 1.4 2.1e-05 24.4 0.3 2.4 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|257386462|ref|YP_003176235.1| - 1.7e-07 30.0 0.1 0.00076 18.0 0.1 2.2 2 0 0 2 2 2 2 HI0933-like protein FAD_binding_2 PF00890.19 gi|257386462|ref|YP_003176235.1| - 1.9e-07 30.2 7.4 3.1e-05 23.0 1.5 2.3 2 1 0 2 2 2 2 FAD binding domain Lycopene_cycl PF05834.7 gi|257386462|ref|YP_003176235.1| - 2.6e-05 23.3 0.6 0.0081 15.1 0.1 2.2 2 0 0 2 2 2 2 Lycopene cyclase protein NAD_binding_8 PF13450.1 gi|257386462|ref|YP_003176235.1| - 4.1e-05 23.5 2.6 0.00029 20.7 0.1 2.4 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Thi4 PF01946.12 gi|257386462|ref|YP_003176235.1| - 0.00058 19.0 0.5 0.0017 17.4 0.2 1.8 2 0 0 2 2 2 1 Thi4 family GIDA PF01134.17 gi|257386462|ref|YP_003176235.1| - 0.00084 18.2 0.1 0.00084 18.2 0.1 1.5 2 0 0 2 2 2 1 Glucose inhibited division protein A Pyr_redox_3 PF13738.1 gi|257386462|ref|YP_003176235.1| - 0.00088 19.3 3.9 0.082 12.9 0.1 2.1 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|257386462|ref|YP_003176235.1| - 0.0086 15.1 2.8 0.0086 15.1 1.9 1.6 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|257386462|ref|YP_003176235.1| - 0.017 14.1 1.8 0.037 13.0 0.5 1.9 1 1 1 2 2 2 0 FAD binding domain Trp_halogenase PF04820.9 gi|257386462|ref|YP_003176235.1| - 0.033 12.8 5.8 0.043 12.4 0.1 2.1 1 1 0 2 2 2 0 Tryptophan halogenase GMC_oxred_N PF00732.14 gi|257386462|ref|YP_003176235.1| - 0.067 12.3 0.0 5.1 6.1 0.0 2.2 2 0 0 2 2 2 0 GMC oxidoreductase NAD_binding_9 PF13454.1 gi|257386462|ref|YP_003176235.1| - 0.21 11.3 4.9 0.78 9.5 0.1 3.1 3 1 0 3 3 3 0 FAD-NAD(P)-binding Peripla_BP_2 PF01497.13 gi|257386463|ref|YP_003176236.1| - 8.3e-11 41.4 0.0 2e-10 40.2 0.0 1.5 1 1 0 1 1 1 1 Periplasmic binding protein FecCD PF01032.13 gi|257386464|ref|YP_003176237.1| - 3e-46 157.6 13.4 4.2e-46 157.2 9.3 1.1 1 0 0 1 1 1 1 FecCD transport family Peripla_BP_2 PF01497.13 gi|257386465|ref|YP_003176238.1| - 7e-18 64.6 0.2 5e-17 61.8 0.0 1.9 2 0 0 2 2 2 1 Periplasmic binding protein TAT_signal PF10518.4 gi|257386465|ref|YP_003176238.1| - 0.11 12.5 1.6 0.25 11.4 1.1 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence NAD_binding_10 PF13460.1 gi|257386466|ref|YP_003176239.1| - 8.6e-23 81.2 2.5 1.1e-22 80.9 1.8 1.1 1 0 0 1 1 1 1 NADH(P)-binding RmlD_sub_bind PF04321.12 gi|257386466|ref|YP_003176239.1| - 1.6e-13 50.2 0.1 2.2e-13 49.7 0.1 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.16 gi|257386466|ref|YP_003176239.1| - 2.3e-13 50.1 0.0 3.2e-13 49.6 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|257386466|ref|YP_003176239.1| - 8.5e-11 41.0 0.0 1.3e-10 40.4 0.0 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NmrA PF05368.8 gi|257386466|ref|YP_003176239.1| - 6.3e-08 32.1 0.1 1.6e-07 30.8 0.0 1.8 2 0 0 2 2 2 1 NmrA-like family adh_short PF00106.20 gi|257386466|ref|YP_003176239.1| - 0.0018 18.1 2.6 0.0048 16.8 0.4 2.5 1 1 1 2 2 2 1 short chain dehydrogenase DapB_N PF01113.15 gi|257386466|ref|YP_003176239.1| - 0.0035 17.2 0.1 0.0068 16.3 0.1 1.5 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Polysacc_synt_2 PF02719.10 gi|257386466|ref|YP_003176239.1| - 0.0096 14.8 0.0 0.15 10.9 0.0 2.3 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein TrkA_N PF02254.13 gi|257386466|ref|YP_003176239.1| - 0.017 15.0 1.4 0.03 14.3 0.1 2.0 2 1 0 2 2 2 0 TrkA-N domain NAD_binding_4 PF07993.7 gi|257386466|ref|YP_003176239.1| - 0.02 13.8 0.1 0.21 10.5 0.0 2.2 1 1 0 2 2 2 0 Male sterility protein adh_short PF00106.20 gi|257386467|ref|YP_003176240.1| - 1.4e-19 70.5 3.1 1.4e-19 70.5 2.1 1.8 2 0 0 2 2 2 1 short chain dehydrogenase KR PF08659.5 gi|257386467|ref|YP_003176240.1| - 1.2e-08 34.8 1.1 1.2e-08 34.8 0.8 1.7 2 0 0 2 2 2 1 KR domain adh_short_C2 PF13561.1 gi|257386467|ref|YP_003176240.1| - 2.6e-07 30.6 0.0 4.5e-07 29.8 0.0 1.3 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase NAD_binding_10 PF13460.1 gi|257386467|ref|YP_003176240.1| - 4.5e-06 26.8 1.5 1.3e-05 25.3 0.4 2.1 1 1 1 2 2 2 1 NADH(P)-binding Epimerase PF01370.16 gi|257386467|ref|YP_003176240.1| - 9.9e-06 25.1 0.1 2.4e-05 23.8 0.1 1.5 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Shikimate_DH PF01488.15 gi|257386467|ref|YP_003176240.1| - 0.12 12.5 0.0 0.24 11.4 0.0 1.5 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase 3HCDH_N PF02737.13 gi|257386467|ref|YP_003176240.1| - 3.7 7.1 5.7 0.79 9.3 0.1 2.2 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain eIF-1a PF01176.14 gi|257386468|ref|YP_003176241.1| - 5.6e-24 83.3 0.2 6.5e-24 83.1 0.1 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 DUF2757 PF10955.3 gi|257386468|ref|YP_003176241.1| - 0.096 12.8 0.0 0.13 12.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2757) ABC_tran PF00005.22 gi|257386470|ref|YP_003176243.1| - 2.9e-37 128.0 0.0 4.3e-37 127.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.18 gi|257386470|ref|YP_003176243.1| - 1.8e-33 116.1 5.0 2.3e-33 115.8 3.4 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region AAA_16 PF13191.1 gi|257386470|ref|YP_003176243.1| - 8.1e-05 22.6 0.7 0.00017 21.6 0.5 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.1 gi|257386470|ref|YP_003176243.1| - 0.00032 21.5 0.1 0.0008 20.2 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|257386470|ref|YP_003176243.1| - 0.0017 18.6 0.0 0.0033 17.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain MobB PF03205.9 gi|257386470|ref|YP_003176243.1| - 0.0024 17.5 0.1 0.0058 16.3 0.0 1.7 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B SMC_N PF02463.14 gi|257386470|ref|YP_003176243.1| - 0.0039 16.4 0.0 0.042 13.0 0.0 1.8 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|257386470|ref|YP_003176243.1| - 0.0045 16.1 0.0 0.0082 15.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 Zeta_toxin PF06414.7 gi|257386470|ref|YP_003176243.1| - 0.0075 15.3 0.0 0.017 14.2 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin AAA_29 PF13555.1 gi|257386470|ref|YP_003176243.1| - 0.016 14.7 0.0 0.038 13.5 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|257386470|ref|YP_003176243.1| - 0.019 15.0 0.1 0.21 11.7 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_21 PF13304.1 gi|257386470|ref|YP_003176243.1| - 0.028 14.3 0.0 0.31 10.9 0.0 2.1 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|257386470|ref|YP_003176243.1| - 0.045 13.7 0.0 0.21 11.5 0.0 2.1 2 0 0 2 2 2 0 50S ribosome-binding GTPase DUF87 PF01935.12 gi|257386470|ref|YP_003176243.1| - 0.06 13.1 0.0 0.13 12.0 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function DUF87 SbcCD_C PF13558.1 gi|257386470|ref|YP_003176243.1| - 0.068 13.0 0.6 0.74 9.7 0.4 2.6 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_33 PF13671.1 gi|257386470|ref|YP_003176243.1| - 0.069 13.0 0.0 0.15 11.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain DUF2107 PF09880.4 gi|257386470|ref|YP_003176243.1| - 0.31 10.9 3.7 0.18 11.7 0.6 2.1 2 0 0 2 2 2 0 Predicted membrane protein (DUF2107) TMP-TENI PF02581.12 gi|257386471|ref|YP_003176244.1| - 3.2e-59 199.0 2.5 3.7e-59 198.8 1.7 1.0 1 0 0 1 1 1 1 Thiamine monophosphate synthase/TENI ThiG PF05690.9 gi|257386471|ref|YP_003176244.1| - 1.1e-06 27.9 2.4 1.8e-06 27.2 1.7 1.5 1 0 0 1 1 1 1 Thiazole biosynthesis protein ThiG NanE PF04131.9 gi|257386471|ref|YP_003176244.1| - 0.0013 17.7 1.5 0.0018 17.2 0.4 1.7 2 0 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase NMO PF03060.10 gi|257386471|ref|YP_003176244.1| - 0.0073 15.4 5.1 0.009 15.1 3.5 1.1 1 0 0 1 1 1 1 Nitronate monooxygenase DHO_dh PF01180.16 gi|257386471|ref|YP_003176244.1| - 1.1 8.1 5.0 0.1 11.5 0.3 1.5 2 0 0 2 2 2 0 Dihydroorotate dehydrogenase Mem_trans PF03547.13 gi|257386472|ref|YP_003176245.1| - 1.6e-24 85.9 13.4 2.9e-12 45.5 4.3 2.0 1 1 1 2 2 2 2 Membrane transport protein Yip1 PF04893.12 gi|257386473|ref|YP_003176246.1| - 0.00024 20.6 17.5 0.00024 20.6 12.1 2.0 1 1 1 2 2 2 1 Yip1 domain Vma12 PF11712.3 gi|257386473|ref|YP_003176246.1| - 0.76 9.4 9.3 1.9 8.1 6.3 1.8 1 1 0 1 1 1 0 Endoplasmic reticulum-based factor for assembly of V-ATPase DUF360 PF04020.8 gi|257386473|ref|YP_003176246.1| - 0.91 9.8 16.0 9.1 6.6 11.1 2.1 1 1 0 1 1 1 0 Membrane protein of unknown function Polysacc_synt_C PF14667.1 gi|257386473|ref|YP_003176246.1| - 6.7 6.4 21.4 0.3 10.8 8.6 2.1 1 1 1 2 2 2 0 Polysaccharide biosynthesis C-terminal domain DUF1282 PF06930.7 gi|257386473|ref|YP_003176246.1| - 7.6 6.1 12.3 13 5.4 8.5 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1282) Peptidase_M50 PF02163.17 gi|257386474|ref|YP_003176247.1| - 1.1e-20 73.4 10.3 1.9e-14 53.0 3.1 2.4 1 1 1 2 2 2 2 Peptidase family M50 CBS PF00571.23 gi|257386474|ref|YP_003176247.1| - 8.2e-08 31.9 0.4 0.0012 18.5 0.1 2.6 2 0 0 2 2 2 2 CBS domain Peptidase_M50B PF13398.1 gi|257386474|ref|YP_003176247.1| - 0.00013 21.4 3.2 0.00013 21.4 2.2 2.3 1 1 1 2 2 2 1 Peptidase M50B-like YbjN PF10722.4 gi|257386474|ref|YP_003176247.1| - 0.022 14.8 0.2 0.12 12.3 0.0 2.1 2 0 0 2 2 2 0 Putative bacterial sensory transduction regulator DUF2437 PF10370.4 gi|257386474|ref|YP_003176247.1| - 0.091 13.1 0.2 0.3 11.4 0.1 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF2437) Peptidase_MA_2 PF13485.1 gi|257386474|ref|YP_003176247.1| - 0.11 12.4 0.1 0.32 11.0 0.1 1.7 2 0 0 2 2 2 0 Peptidase MA superfamily Arylsulfotrans PF05935.6 gi|257386475|ref|YP_003176248.1| - 4.6e-09 35.3 0.1 1.5e-08 33.6 0.0 1.9 2 1 0 2 2 2 1 Arylsulfotransferase (ASST) Arylsulfotran_2 PF14269.1 gi|257386475|ref|YP_003176248.1| - 1.6e-07 30.8 4.0 1.7e-06 27.4 0.2 3.3 2 1 1 3 3 3 1 Arylsulfotransferase (ASST) NHL PF01436.16 gi|257386475|ref|YP_003176248.1| - 0.022 14.6 0.1 0.022 14.6 0.1 4.1 4 0 0 4 4 4 0 NHL repeat UCR_Fe-S_N PF10399.4 gi|257386475|ref|YP_003176248.1| - 0.14 11.3 2.8 1.4 8.1 0.0 2.5 2 0 0 2 2 2 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Zip PF02535.17 gi|257386476|ref|YP_003176249.1| - 1.2e-21 77.0 10.2 2.6e-16 59.5 4.0 2.1 1 1 1 2 2 2 2 ZIP Zinc transporter NAD_binding_2 PF03446.10 gi|257386478|ref|YP_003176251.1| - 7.4e-36 123.4 0.2 1e-35 122.9 0.1 1.2 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 6PGD PF00393.14 gi|257386478|ref|YP_003176251.1| - 6.2e-23 81.4 0.0 1.4e-22 80.2 0.0 1.6 2 0 0 2 2 2 1 6-phosphogluconate dehydrogenase, C-terminal domain 3HCDH_N PF02737.13 gi|257386478|ref|YP_003176251.1| - 0.00026 20.6 0.5 0.00041 20.0 0.3 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|257386478|ref|YP_003176251.1| - 0.0003 20.0 0.1 0.00046 19.3 0.1 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|257386478|ref|YP_003176251.1| - 0.00044 20.6 0.2 0.00079 19.8 0.1 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_11 PF14833.1 gi|257386478|ref|YP_003176251.1| - 0.00078 19.5 0.1 0.0071 16.4 0.0 2.3 2 1 0 2 2 2 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase TrkA_N PF02254.13 gi|257386478|ref|YP_003176251.1| - 0.0028 17.6 1.9 0.0034 17.3 0.1 2.1 3 0 0 3 3 3 1 TrkA-N domain UDPG_MGDP_dh_N PF03721.9 gi|257386478|ref|YP_003176251.1| - 0.11 11.8 0.1 0.17 11.2 0.1 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Methyltransf_18 PF12847.2 gi|257386478|ref|YP_003176251.1| - 0.13 12.9 0.3 0.34 11.4 0.2 1.8 1 1 0 1 1 1 0 Methyltransferase domain DapB_N PF01113.15 gi|257386478|ref|YP_003176251.1| - 0.3 11.0 2.0 1.5 8.7 1.4 2.1 1 1 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus DUF1628 PF07790.6 gi|257386479|ref|YP_003176252.1| - 2.8e-13 50.3 1.7 2.8e-13 50.3 1.2 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF1628) DUF4349 PF14257.1 gi|257386479|ref|YP_003176252.1| - 0.28 10.3 6.1 0.42 9.7 4.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4349) Cation_efflux PF01545.16 gi|257386480|ref|YP_003176253.1| - 0.48 9.4 4.1 0.47 9.4 2.9 1.0 1 0 0 1 1 1 0 Cation efflux family UCR_Fe-S_N PF10399.4 gi|257386481|ref|YP_003176254.1| - 0.12 11.5 1.7 0.29 10.3 1.2 1.7 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal TAT_signal PF10518.4 gi|257386481|ref|YP_003176254.1| - 0.14 12.1 0.5 0.14 12.1 0.4 2.0 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence Fer2 PF00111.22 gi|257386482|ref|YP_003176255.1| - 5.6e-13 48.4 0.6 1.2e-12 47.4 0.4 1.6 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Peptidase_M28 PF04389.12 gi|257386483|ref|YP_003176256.1| - 2.3e-32 112.1 0.4 3.8e-32 111.4 0.3 1.4 1 0 0 1 1 1 1 Peptidase family M28 PA PF02225.17 gi|257386483|ref|YP_003176256.1| - 4.5e-10 39.1 0.0 2.1e-09 36.9 0.0 2.1 2 0 0 2 2 2 1 PA domain Peptidase_M20 PF01546.23 gi|257386483|ref|YP_003176256.1| - 2.5e-06 27.1 3.2 3.2e-06 26.7 1.3 1.8 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M42 PF05343.9 gi|257386483|ref|YP_003176256.1| - 4.2e-05 22.4 0.3 7.2e-05 21.7 0.2 1.4 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Nicastrin PF05450.10 gi|257386483|ref|YP_003176256.1| - 0.0057 15.9 0.1 0.0093 15.2 0.1 1.3 1 0 0 1 1 1 1 Nicastrin ATPase_gene1 PF09527.5 gi|257386484|ref|YP_003176257.1| - 1.1 9.1 8.0 8.3 6.3 5.2 2.4 1 1 1 2 2 2 0 Putative F0F1-ATPase subunit (ATPase_gene1) ABC_membrane PF00664.18 gi|257386485|ref|YP_003176258.1| - 3.2e-36 125.1 1.6 4e-36 124.8 1.1 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.22 gi|257386485|ref|YP_003176258.1| - 5.4e-36 123.9 0.0 1.1e-35 122.8 0.0 1.6 1 0 0 1 1 1 1 ABC transporter AAA_17 PF13207.1 gi|257386485|ref|YP_003176258.1| - 0.00011 23.0 0.1 0.00031 21.5 0.1 2.0 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|257386485|ref|YP_003176258.1| - 0.00011 21.3 0.0 0.00022 20.3 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_16 PF13191.1 gi|257386485|ref|YP_003176258.1| - 0.00015 21.8 0.0 0.00032 20.7 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_21 PF13304.1 gi|257386485|ref|YP_003176258.1| - 0.00033 20.7 0.0 0.0082 16.1 0.0 2.3 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|257386485|ref|YP_003176258.1| - 0.00037 19.8 0.1 0.015 14.5 0.0 2.1 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|257386485|ref|YP_003176258.1| - 0.00037 20.6 0.2 0.0037 17.3 0.1 2.3 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|257386485|ref|YP_003176258.1| - 0.0019 17.4 0.0 0.0034 16.5 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|257386485|ref|YP_003176258.1| - 0.0022 17.5 0.1 0.0067 15.9 0.1 1.8 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF2107 PF09880.4 gi|257386485|ref|YP_003176258.1| - 0.0023 17.7 0.2 0.0051 16.6 0.1 1.5 1 0 0 1 1 1 1 Predicted membrane protein (DUF2107) AAA_18 PF13238.1 gi|257386485|ref|YP_003176258.1| - 0.0074 16.5 0.0 0.02 15.2 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|257386485|ref|YP_003176258.1| - 0.0083 15.7 0.5 0.052 13.1 0.0 2.2 2 1 1 3 3 3 1 AAA domain AAA_33 PF13671.1 gi|257386485|ref|YP_003176258.1| - 0.017 15.0 0.0 0.039 13.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|257386485|ref|YP_003176258.1| - 0.017 15.2 0.0 0.077 13.1 0.0 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_10 PF12846.2 gi|257386485|ref|YP_003176258.1| - 0.018 14.5 0.4 0.047 13.1 0.3 1.7 1 1 0 1 1 1 0 AAA-like domain MMR_HSR1 PF01926.18 gi|257386485|ref|YP_003176258.1| - 0.036 14.0 0.0 0.92 9.4 0.0 2.5 2 0 0 2 2 2 0 50S ribosome-binding GTPase ABC_membrane_3 PF13748.1 gi|257386485|ref|YP_003176258.1| - 0.037 13.0 0.3 6.1 5.8 0.1 2.2 2 0 0 2 2 2 0 ABC transporter transmembrane region AAA_25 PF13481.1 gi|257386485|ref|YP_003176258.1| - 0.043 13.2 0.2 0.11 11.8 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|257386485|ref|YP_003176258.1| - 0.065 12.9 0.1 0.82 9.3 0.0 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) ABC_ATPase PF09818.4 gi|257386485|ref|YP_003176258.1| - 0.086 11.4 0.1 0.14 10.7 0.1 1.2 1 0 0 1 1 1 0 Predicted ATPase of the ABC class DUF87 PF01935.12 gi|257386485|ref|YP_003176258.1| - 0.093 12.5 0.0 0.21 11.3 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function DUF87 AAA_14 PF13173.1 gi|257386485|ref|YP_003176258.1| - 0.14 12.0 0.0 0.65 9.9 0.0 2.0 2 1 0 2 2 2 0 AAA domain Response_reg PF00072.19 gi|257386486|ref|YP_003176259.1| - 3.4e-23 81.7 2.0 5e-23 81.2 0.1 2.2 2 1 0 2 2 2 1 Response regulator receiver domain HATPase_c PF02518.21 gi|257386486|ref|YP_003176259.1| - 5.3e-23 80.8 0.1 1.8e-22 79.1 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|257386486|ref|YP_003176259.1| - 1.8e-08 34.1 0.1 5.1e-08 32.7 0.0 1.8 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain PAS PF00989.19 gi|257386486|ref|YP_003176259.1| - 3.1e-08 33.3 0.2 9.7e-08 31.7 0.1 2.0 2 0 0 2 2 2 1 PAS fold HATPase_c_5 PF14501.1 gi|257386486|ref|YP_003176259.1| - 2.9e-07 30.1 0.0 1e-06 28.3 0.0 1.9 2 0 0 2 2 2 1 GHKL domain PAS_4 PF08448.5 gi|257386486|ref|YP_003176259.1| - 5e-07 29.7 0.2 1.1e-06 28.6 0.2 1.6 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.1 gi|257386486|ref|YP_003176259.1| - 5.8e-06 26.6 0.0 1.8e-05 25.0 0.0 1.9 1 0 0 1 1 1 1 PAS domain PAS_8 PF13188.1 gi|257386486|ref|YP_003176259.1| - 0.0021 17.8 0.0 0.017 14.9 0.0 2.5 2 0 0 2 2 2 1 PAS domain tRNA_bind PF01588.15 gi|257386486|ref|YP_003176259.1| - 0.11 12.3 0.0 0.25 11.2 0.0 1.5 1 0 0 1 1 1 0 Putative tRNA binding domain DUF192 PF02643.10 gi|257386487|ref|YP_003176260.1| - 2.3e-58 194.5 0.0 6.6e-28 96.5 0.0 2.1 2 0 0 2 2 2 2 Uncharacterized ACR, COG1430 DUF1905 PF08922.6 gi|257386487|ref|YP_003176260.1| - 0.0015 18.0 0.0 1.7 8.2 0.0 2.5 2 0 0 2 2 2 2 Domain of unknown function (DUF1905) DUF2020 PF09449.5 gi|257386487|ref|YP_003176260.1| - 0.049 13.2 0.4 1.9 8.1 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF2020) DUF4307 PF14155.1 gi|257386487|ref|YP_003176260.1| - 0.056 13.2 0.8 4.5 7.0 0.1 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4307) PEX-2N PF09263.5 gi|257386487|ref|YP_003176260.1| - 0.066 13.5 0.0 19 5.6 0.0 2.3 2 0 0 2 2 2 0 Peroxisome biogenesis factor 1, N-terminal zf-ribbon_3 PF13248.1 gi|257386488|ref|YP_003176261.1| - 0.002 17.2 0.7 1.2 8.4 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain Prok-RING_1 PF14446.1 gi|257386488|ref|YP_003176261.1| - 0.0099 15.5 1.5 0.94 9.2 0.1 2.1 2 0 0 2 2 2 2 Prokaryotic RING finger family 1 DUF2082 PF09855.4 gi|257386488|ref|YP_003176261.1| - 0.016 15.0 0.3 0.02 14.7 0.2 1.2 1 0 0 1 1 1 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Lar_restr_allev PF14354.1 gi|257386488|ref|YP_003176261.1| - 0.017 15.3 2.5 0.047 13.9 1.8 1.6 1 1 0 1 1 1 0 Restriction alleviation protein Lar RRN7 PF11781.3 gi|257386488|ref|YP_003176261.1| - 0.026 14.0 2.3 1.1 8.7 0.2 2.2 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 DZR PF12773.2 gi|257386488|ref|YP_003176261.1| - 0.068 13.0 1.6 0.37 10.6 1.1 1.9 1 1 0 1 1 1 0 Double zinc ribbon UPF0547 PF10571.4 gi|257386488|ref|YP_003176261.1| - 0.084 12.5 1.9 0.37 10.5 1.3 1.9 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 A2L_zn_ribbon PF08792.5 gi|257386488|ref|YP_003176261.1| - 0.088 12.2 0.7 8 6.0 0.0 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain DUF3133 PF11331.3 gi|257386488|ref|YP_003176261.1| - 0.11 12.0 0.2 0.39 10.3 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3133) zinc-ribbons_6 PF07191.7 gi|257386488|ref|YP_003176261.1| - 0.14 12.0 1.8 0.4 10.5 1.3 1.8 1 1 0 1 1 1 0 zinc-ribbons CpXC PF14353.1 gi|257386488|ref|YP_003176261.1| - 0.17 11.8 0.7 2.3 8.1 0.1 1.9 1 1 0 1 1 1 0 CpXC protein zinc_ribbon_2 PF13240.1 gi|257386488|ref|YP_003176261.1| - 0.77 9.3 4.2 5.1 6.7 2.9 2.0 1 1 0 1 1 1 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|257386488|ref|YP_003176261.1| - 9.1 5.7 6.9 1.8e+02 1.5 4.8 2.2 1 1 0 1 1 1 0 TFIIB zinc-binding DNA_ligase_ZBD PF03119.11 gi|257386489|ref|YP_003176262.1| - 0.0056 16.3 0.1 0.012 15.3 0.1 1.6 1 0 0 1 1 1 1 NAD-dependent DNA ligase C4 zinc finger domain Prok-RING_1 PF14446.1 gi|257386489|ref|YP_003176262.1| - 0.011 15.3 0.3 1.8 8.3 0.1 2.1 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 DUF2082 PF09855.4 gi|257386489|ref|YP_003176262.1| - 0.026 14.3 0.3 0.032 14.0 0.2 1.1 1 0 0 1 1 1 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) zf-ribbon_3 PF13248.1 gi|257386489|ref|YP_003176262.1| - 0.067 12.4 4.3 0.57 9.4 3.0 2.1 1 1 1 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|257386489|ref|YP_003176262.1| - 0.069 12.9 1.6 0.17 11.7 1.1 1.7 1 1 0 1 1 1 0 Double zinc ribbon TF_Zn_Ribbon PF08271.7 gi|257386489|ref|YP_003176262.1| - 0.11 11.8 1.0 1.5 8.1 0.0 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding Auto_anti-p27 PF06677.7 gi|257386489|ref|YP_003176262.1| - 0.13 12.0 1.1 0.89 9.3 0.1 2.1 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Yippee-Mis18 PF03226.9 gi|257386489|ref|YP_003176262.1| - 0.17 11.9 0.6 3.8 7.6 0.0 2.0 1 1 1 2 2 2 0 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly Lar_restr_allev PF14354.1 gi|257386489|ref|YP_003176262.1| - 0.18 12.1 1.8 0.6 10.4 1.2 1.8 1 1 0 1 1 1 0 Restriction alleviation protein Lar zinc-ribbons_6 PF07191.7 gi|257386489|ref|YP_003176262.1| - 0.24 11.2 2.0 0.65 9.8 1.4 1.8 1 1 0 1 1 1 0 zinc-ribbons eIF-5_eIF-2B PF01873.12 gi|257386489|ref|YP_003176262.1| - 0.66 9.6 2.3 3.5 7.3 1.6 1.9 1 1 0 1 1 1 0 Domain found in IF2B/IF5 zf-TFIIB PF13453.1 gi|257386489|ref|YP_003176262.1| - 0.92 8.7 4.6 4.6 6.5 3.3 1.9 1 1 1 2 2 2 0 Transcription factor zinc-finger C1_3 PF07649.7 gi|257386489|ref|YP_003176262.1| - 1.7 8.7 4.0 2.3 8.3 0.1 2.2 2 0 0 2 2 2 0 C1-like domain PSII_BNR PF14870.1 gi|257386490|ref|YP_003176263.1| - 6.4e-07 28.6 0.3 4 6.3 0.0 4.5 2 1 2 4 4 4 4 Photosynthesis system II assembly factor YCF48 BNR PF02012.15 gi|257386490|ref|YP_003176263.1| - 0.0041 16.7 27.8 0.6 10.1 0.5 5.5 6 0 0 6 6 6 4 BNR/Asp-box repeat BNR_3 PF13859.1 gi|257386490|ref|YP_003176263.1| - 0.5 9.3 5.6 0.82 8.6 0.1 2.8 4 0 0 4 4 4 0 BNR repeat-like domain DUF1508 PF07411.7 gi|257386491|ref|YP_003176264.1| - 1.5e-41 139.5 3.1 1.2e-20 72.5 0.1 2.4 2 0 0 2 2 2 2 Domain of unknown function (DUF1508) DUF2914 PF11141.3 gi|257386491|ref|YP_003176264.1| - 0.01 15.3 1.3 0.64 9.5 0.0 3.1 2 1 0 2 2 2 0 Protein of unknown function (DUF2914) Glyco_trans_4_4 PF13579.1 gi|257386491|ref|YP_003176264.1| - 0.025 14.7 0.3 0.048 13.8 0.1 1.5 2 0 0 2 2 2 0 Glycosyl transferase 4-like domain Tombus_P19 PF03220.8 gi|257386491|ref|YP_003176264.1| - 0.045 13.1 0.5 6.9 5.9 0.0 2.2 2 0 0 2 2 2 0 Tombusvirus P19 core protein DUF1799 PF08809.6 gi|257386491|ref|YP_003176264.1| - 0.081 12.7 0.1 8.5 6.2 0.0 2.2 2 0 0 2 2 2 0 Phage related hypothetical protein (DUF1799) DUF2341 PF10102.4 gi|257386491|ref|YP_003176264.1| - 0.17 12.0 0.7 5.8 7.1 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF2341) Arylsulfotrans PF05935.6 gi|257386492|ref|YP_003176265.1| - 8.6e-10 37.7 4.4 8.9e-09 34.3 1.9 2.1 1 1 0 2 2 2 2 Arylsulfotransferase (ASST) Arylsulfotran_2 PF14269.1 gi|257386492|ref|YP_003176265.1| - 2.2e-09 36.9 0.2 1.9e-05 23.9 0.1 3.2 1 1 1 2 2 2 2 Arylsulfotransferase (ASST) PQQ PF01011.16 gi|257386492|ref|YP_003176265.1| - 0.0018 17.6 1.7 1.6 8.4 0.1 4.4 5 1 0 5 5 5 2 PQQ enzyme repeat DUF504 PF04457.7 gi|257386492|ref|YP_003176265.1| - 0.053 13.6 0.7 0.16 12.1 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF504) AP_endonuc_2 PF01261.19 gi|257386493|ref|YP_003176266.1| - 4.2e-19 68.6 4.1 7e-19 67.9 2.8 1.3 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Glyoxalase_2 PF12681.2 gi|257386493|ref|YP_003176266.1| - 0.15 12.6 2.2 0.22 12.1 0.2 2.1 2 1 0 2 2 2 0 Glyoxalase-like domain HTH_20 PF12840.2 gi|257386494|ref|YP_003176267.1| - 5.1e-06 26.1 0.1 1.6e-05 24.6 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|257386494|ref|YP_003176267.1| - 0.024 14.2 0.4 0.19 11.4 0.0 2.6 3 0 0 3 3 3 0 Bacterial regulatory protein, arsR family HTH_34 PF13601.1 gi|257386494|ref|YP_003176267.1| - 0.12 12.4 0.0 0.21 11.6 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain IBR PF01485.16 gi|257386494|ref|YP_003176267.1| - 2.4 8.1 12.7 1.2 9.0 0.1 2.7 2 1 0 2 2 2 0 IBR domain PUA PF01472.15 gi|257386495|ref|YP_003176268.1| - 1.4e-16 59.9 2.3 2.3e-16 59.2 1.6 1.3 1 0 0 1 1 1 1 PUA domain UL11 PF11094.3 gi|257386495|ref|YP_003176268.1| - 0.27 11.0 4.3 0.41 10.5 0.4 2.6 3 0 0 3 3 3 0 Membrane-associated tegument protein DUF3040 PF11239.3 gi|257386496|ref|YP_003176269.1| - 0.084 12.9 3.6 0.1 12.6 2.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) zf-DHHC PF01529.15 gi|257386497|ref|YP_003176270.1| - 0.01 15.2 0.0 0.013 14.9 0.0 1.3 1 1 0 1 1 1 0 DHHC palmitoyltransferase DUF1469 PF07332.6 gi|257386497|ref|YP_003176270.1| - 0.031 13.9 6.6 0.39 10.4 0.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1469) COX15-CtaA PF02628.10 gi|257386497|ref|YP_003176270.1| - 0.06 12.2 10.5 0.13 11.1 7.3 1.6 1 1 0 1 1 1 0 Cytochrome oxidase assembly protein MscS_TM PF12794.2 gi|257386497|ref|YP_003176270.1| - 0.071 11.7 2.0 0.088 11.4 1.4 1.1 1 0 0 1 1 1 0 Mechanosensitive ion channel inner membrane domain 1 DUF998 PF06197.8 gi|257386497|ref|YP_003176270.1| - 0.28 10.4 15.1 0.47 9.7 10.4 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF998) DUF4234 PF14018.1 gi|257386497|ref|YP_003176270.1| - 2.3 7.9 5.7 56 3.5 4.0 2.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4234) HTH_3 PF01381.17 gi|257386498|ref|YP_003176271.1| - 4e-15 55.3 0.0 4.4e-15 55.2 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|257386498|ref|YP_003176271.1| - 9.4e-11 41.7 0.1 1.1e-10 41.5 0.1 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|257386498|ref|YP_003176271.1| - 2.9e-09 36.8 0.0 3.1e-09 36.7 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.1 gi|257386498|ref|YP_003176271.1| - 5.7e-05 22.5 0.0 8.2e-05 22.0 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|257386498|ref|YP_003176271.1| - 0.00038 20.5 0.0 0.0005 20.2 0.0 1.1 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain HTH_24 PF13412.1 gi|257386498|ref|YP_003176271.1| - 0.00061 19.1 0.0 0.00079 18.7 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_23 PF13384.1 gi|257386498|ref|YP_003176271.1| - 0.00071 19.1 0.0 0.00096 18.7 0.0 1.2 1 0 0 1 1 1 1 Homeodomain-like domain HTH_25 PF13413.1 gi|257386498|ref|YP_003176271.1| - 0.0016 18.0 0.0 0.002 17.7 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|257386498|ref|YP_003176271.1| - 0.0054 16.0 0.3 0.0079 15.4 0.2 1.2 1 0 0 1 1 1 1 Sigma-70, region 4 GntR PF00392.16 gi|257386498|ref|YP_003176271.1| - 0.006 15.9 0.1 0.0078 15.6 0.1 1.2 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family MarR_2 PF12802.2 gi|257386498|ref|YP_003176271.1| - 0.0066 16.0 0.0 0.01 15.5 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_37 PF13744.1 gi|257386498|ref|YP_003176271.1| - 0.0067 16.2 0.0 0.0067 16.2 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|257386498|ref|YP_003176271.1| - 0.007 16.1 0.0 0.009 15.7 0.0 1.2 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_11 PF08279.7 gi|257386498|ref|YP_003176271.1| - 0.0078 15.8 0.0 0.014 15.0 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_28 PF13518.1 gi|257386498|ref|YP_003176271.1| - 0.013 15.4 0.1 0.017 15.1 0.1 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|257386498|ref|YP_003176271.1| - 0.051 13.0 0.2 0.15 11.5 0.0 1.7 2 0 0 2 2 2 0 Sigma-70, region 4 MarR PF01047.17 gi|257386498|ref|YP_003176271.1| - 0.059 13.0 0.0 0.072 12.8 0.0 1.2 1 0 0 1 1 1 0 MarR family HTH_AsnC-type PF13404.1 gi|257386498|ref|YP_003176271.1| - 0.061 12.8 0.1 0.094 12.2 0.1 1.3 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain DUF1323 PF07037.6 gi|257386498|ref|YP_003176271.1| - 0.098 12.8 0.0 0.13 12.3 0.0 1.2 1 0 0 1 1 1 0 Putative transcription regulator (DUF1323) DnaJ PF00226.26 gi|257386499|ref|YP_003176272.1| - 5.9e-11 41.9 0.0 1.2e-10 41.0 0.0 1.5 1 0 0 1 1 1 1 DnaJ domain Fer2 PF00111.22 gi|257386499|ref|YP_003176272.1| - 1.6e-09 37.3 0.0 3e-09 36.5 0.0 1.4 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain RPT PF13446.1 gi|257386499|ref|YP_003176272.1| - 0.0077 15.6 0.0 0.038 13.4 0.0 2.0 2 0 0 2 2 2 1 A repeated domain in UCH-protein RNA_pol_Rpo13 PF12136.3 gi|257386501|ref|YP_003176274.1| - 0.2 11.3 3.2 0.64 9.7 2.2 1.7 1 1 0 1 1 1 0 RNA polymerase Rpo13 subunit HTH domain NIR_SIR PF01077.17 gi|257386503|ref|YP_003176276.1| - 2.1e-42 144.1 0.0 1.2e-29 102.6 0.0 2.4 2 0 0 2 2 2 2 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.12 gi|257386503|ref|YP_003176276.1| - 1.3e-36 124.0 0.0 1.3e-16 59.9 0.0 3.3 2 1 0 2 2 2 2 Nitrite/Sulfite reductase ferredoxin-like half domain Cys_rich_CPCC PF14206.1 gi|257386506|ref|YP_003176279.1| - 4.1e-31 106.3 0.5 5e-31 106.0 0.3 1.1 1 0 0 1 1 1 1 Cysteine-rich CPCC zf-ribbon_3 PF13248.1 gi|257386506|ref|YP_003176279.1| - 0.84 8.9 7.8 2 7.7 5.4 1.7 1 1 0 1 1 1 0 zinc-ribbon domain Aldo_ket_red PF00248.16 gi|257386507|ref|YP_003176280.1| - 4.4e-57 193.0 0.0 5.4e-57 192.7 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family DUF2227 PF09988.4 gi|257386508|ref|YP_003176281.1| - 0.5 9.9 2.3 0.43 10.1 0.9 1.4 1 1 0 1 1 1 0 Uncharacterized metal-binding protein (DUF2227) SpoIIIAC PF06686.6 gi|257386508|ref|YP_003176281.1| - 1.1 9.1 6.8 0.11 12.2 1.2 1.7 1 1 1 2 2 2 0 Stage III sporulation protein AC/AD protein family TMEM238 PF15125.1 gi|257386508|ref|YP_003176281.1| - 1.5 8.7 9.1 1.1 9.2 5.3 1.5 1 1 1 2 2 2 0 TMEM238 protein family DUF1656 PF07869.7 gi|257386508|ref|YP_003176281.1| - 3.3 7.5 10.2 16 5.3 6.4 2.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1656) DUF308 PF03729.8 gi|257386508|ref|YP_003176281.1| - 5.8 6.9 14.5 0.91 9.5 3.0 2.1 1 1 1 2 2 2 0 Short repeat of unknown function (DUF308) Phage_integrase PF00589.17 gi|257386510|ref|YP_003176283.1| - 2.3e-08 33.9 0.0 1e-07 31.7 0.0 2.0 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.12 gi|257386510|ref|YP_003176283.1| - 7.8e-05 22.7 0.6 7.8e-05 22.7 0.4 2.3 2 1 1 3 3 3 1 Phage integrase, N-terminal SAM-like domain Mrr_N PF14338.1 gi|257386511|ref|YP_003176284.1| - 0.0044 17.0 0.0 0.0065 16.5 0.0 1.3 1 1 0 1 1 1 1 Mrr N-terminal domain DUF977 PF06163.6 gi|257386511|ref|YP_003176284.1| - 0.0046 16.6 0.0 0.0054 16.4 0.0 1.0 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF977) DUF2161 PF09929.4 gi|257386511|ref|YP_003176284.1| - 0.041 13.7 0.0 0.05 13.5 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2161) HTH_20 PF12840.2 gi|257386511|ref|YP_003176284.1| - 0.11 12.2 0.1 0.24 11.2 0.0 1.5 2 0 0 2 2 2 0 Helix-turn-helix domain DUF4131 PF13567.1 gi|257386513|ref|YP_003176286.1| - 0.064 12.6 0.1 0.12 11.7 0.1 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) DUF4271 PF14093.1 gi|257386513|ref|YP_003176286.1| - 0.43 10.2 9.9 0.51 9.9 6.4 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4271) VIT1 PF01988.14 gi|257386513|ref|YP_003176286.1| - 1.4 8.3 7.2 2.2 7.7 5.0 1.2 1 0 0 1 1 1 0 VIT family AAA_16 PF13191.1 gi|257386514|ref|YP_003176287.1| - 2e-10 40.9 7.2 5.5e-10 39.5 4.4 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|257386514|ref|YP_003176287.1| - 3.8e-10 40.0 0.0 9.1e-10 38.7 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|257386514|ref|YP_003176287.1| - 5.2e-06 26.6 0.0 1.5e-05 25.1 0.0 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_14 PF13173.1 gi|257386514|ref|YP_003176287.1| - 0.00034 20.5 0.0 0.00098 19.0 0.0 1.7 1 1 0 1 1 1 1 AAA domain DUF815 PF05673.8 gi|257386514|ref|YP_003176287.1| - 0.00051 19.0 0.0 0.00097 18.1 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) Cdc6_C PF09079.6 gi|257386514|ref|YP_003176287.1| - 0.00068 19.3 0.2 0.0019 17.9 0.2 1.7 1 0 0 1 1 1 1 CDC6, C terminal AAA_17 PF13207.1 gi|257386514|ref|YP_003176287.1| - 0.0014 19.4 4.4 0.018 15.8 3.1 2.8 1 1 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|257386514|ref|YP_003176287.1| - 0.002 17.8 0.0 0.0065 16.1 0.0 1.9 1 1 0 1 1 1 1 Archaeal ATPase NB-ARC PF00931.17 gi|257386514|ref|YP_003176287.1| - 0.0021 16.9 0.0 0.0035 16.2 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain AAA_24 PF13479.1 gi|257386514|ref|YP_003176287.1| - 0.0033 17.0 0.0 0.0054 16.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|257386514|ref|YP_003176287.1| - 0.0037 16.9 0.4 0.013 15.1 0.2 1.9 1 1 0 1 1 1 1 NACHT domain AAA_5 PF07728.9 gi|257386514|ref|YP_003176287.1| - 0.0045 16.7 0.1 0.14 11.8 0.0 2.7 2 1 1 3 3 3 1 AAA domain (dynein-related subfamily) RuvB_N PF05496.7 gi|257386514|ref|YP_003176287.1| - 0.0046 16.0 0.2 0.021 13.8 0.0 2.0 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus DEAD PF00270.24 gi|257386514|ref|YP_003176287.1| - 0.0055 16.2 0.1 0.52 9.7 0.0 2.3 1 1 1 2 2 2 1 DEAD/DEAH box helicase AAA_18 PF13238.1 gi|257386514|ref|YP_003176287.1| - 0.0067 16.7 0.0 0.017 15.3 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|257386514|ref|YP_003176287.1| - 0.011 15.5 0.1 0.022 14.6 0.1 1.8 1 1 0 1 1 1 0 AAA domain Sigma54_activat PF00158.21 gi|257386514|ref|YP_003176287.1| - 0.015 14.7 0.0 0.029 13.8 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain IstB_IS21 PF01695.12 gi|257386514|ref|YP_003176287.1| - 0.017 14.5 0.2 0.058 12.8 0.0 2.0 2 0 0 2 2 2 0 IstB-like ATP binding protein DUF258 PF03193.11 gi|257386514|ref|YP_003176287.1| - 0.018 14.2 0.0 0.033 13.3 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Mg_chelatase PF01078.16 gi|257386514|ref|YP_003176287.1| - 0.019 14.1 0.0 0.037 13.1 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_30 PF13604.1 gi|257386514|ref|YP_003176287.1| - 0.02 14.5 0.4 0.067 12.7 0.0 2.0 2 1 0 2 2 2 0 AAA domain Sigma54_activ_2 PF14532.1 gi|257386514|ref|YP_003176287.1| - 0.027 14.5 0.3 0.14 12.2 0.0 2.3 2 1 0 2 2 2 0 Sigma-54 interaction domain ABC_tran PF00005.22 gi|257386514|ref|YP_003176287.1| - 0.029 14.6 0.2 0.62 10.3 0.0 2.7 2 1 0 3 3 3 0 ABC transporter PhoH PF02562.11 gi|257386514|ref|YP_003176287.1| - 0.055 12.6 0.0 7.1 5.8 0.0 2.3 2 0 0 2 2 2 0 PhoH-like protein MMR_HSR1 PF01926.18 gi|257386514|ref|YP_003176287.1| - 0.063 13.2 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 50S ribosome-binding GTPase RNA_helicase PF00910.17 gi|257386514|ref|YP_003176287.1| - 0.08 13.1 0.0 0.18 11.9 0.0 1.6 1 0 0 1 1 1 0 RNA helicase Bac_DnaA PF00308.13 gi|257386514|ref|YP_003176287.1| - 0.099 12.2 0.1 4.3 6.9 0.0 2.1 2 0 0 2 2 2 0 Bacterial dnaA protein MobB PF03205.9 gi|257386514|ref|YP_003176287.1| - 0.16 11.6 0.0 0.39 10.4 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B HhH-GPD PF00730.20 gi|257386516|ref|YP_003176289.1| - 5.2e-14 52.4 0.0 8e-14 51.8 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein Opy2 PF09463.5 gi|257386516|ref|YP_003176289.1| - 0.32 11.1 5.6 0.49 10.5 3.9 1.2 1 0 0 1 1 1 0 Opy2 protein DUF3134 PF11332.3 gi|257386516|ref|YP_003176289.1| - 0.51 10.5 4.2 0.53 10.4 0.2 2.6 1 1 2 3 3 3 0 Protein of unknown function (DUF3134) HTH_27 PF13463.1 gi|257386517|ref|YP_003176290.1| - 0.012 15.9 0.0 0.016 15.5 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|257386517|ref|YP_003176290.1| - 0.038 13.6 0.0 0.051 13.2 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|257386517|ref|YP_003176290.1| - 0.055 13.1 0.0 0.074 12.7 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF1495 PF07381.6 gi|257386517|ref|YP_003176290.1| - 0.073 12.7 0.0 0.46 10.1 0.0 1.9 1 1 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) DUF505 PF04458.7 gi|257386517|ref|YP_003176290.1| - 0.075 11.1 0.1 0.071 11.2 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF505) HTH_20 PF12840.2 gi|257386517|ref|YP_003176290.1| - 0.089 12.6 0.0 0.11 12.2 0.0 1.1 1 0 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.2 gi|257386517|ref|YP_003176290.1| - 0.11 12.1 0.0 0.15 11.7 0.0 1.1 1 0 0 1 1 1 0 MarR family HTH_29 PF13551.1 gi|257386517|ref|YP_003176290.1| - 0.11 12.6 0.0 0.14 12.3 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn helix HTH_24 PF13412.1 gi|257386517|ref|YP_003176290.1| - 0.14 11.6 0.0 0.2 11.0 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DNA_methylase PF00145.12 gi|257386518|ref|YP_003176291.1| - 2.3e-63 214.3 0.0 3.5e-63 213.7 0.0 1.3 1 0 0 1 1 1 1 C-5 cytosine-specific DNA methylase Methyltransf_15 PF09445.5 gi|257386518|ref|YP_003176291.1| - 0.049 13.1 0.0 0.076 12.5 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase AF0941-like PF14591.1 gi|257386519|ref|YP_003176292.1| - 6.6 6.8 9.9 0.75 9.8 0.5 3.3 4 0 0 4 4 4 0 AF0941-like EcoRII-C PF09019.6 gi|257386520|ref|YP_003176293.1| - 2.1e-05 24.4 0.0 0.11 12.3 0.0 2.5 2 0 0 2 2 2 2 EcoRII C terminal Prominin PF05478.6 gi|257386520|ref|YP_003176293.1| - 0.13 9.8 0.0 0.17 9.3 0.0 1.1 1 0 0 1 1 1 0 Prominin Adeno_E3B PF03376.9 gi|257386520|ref|YP_003176293.1| - 0.2 11.6 0.0 0.35 10.8 0.0 1.3 1 0 0 1 1 1 0 Adenovirus E3B protein UbiA PF01040.13 gi|257386523|ref|YP_003176296.1| - 0.0025 17.0 2.3 0.0025 17.0 1.6 1.3 1 1 0 1 1 1 1 UbiA prenyltransferase family DUF347 PF03988.7 gi|257386524|ref|YP_003176297.1| - 0.15 11.9 1.8 1.5 8.8 0.4 2.1 2 0 0 2 2 2 0 Repeat of Unknown Function (DUF347) Phage_Mu_Gp45 PF06890.7 gi|257386526|ref|YP_003176299.1| - 0.053 12.9 0.1 0.075 12.4 0.1 1.2 1 0 0 1 1 1 0 Bacteriophage Mu Gp45 protein Cadherin-like PF12733.2 gi|257386526|ref|YP_003176299.1| - 0.071 13.3 1.0 0.15 12.3 0.7 1.7 1 1 0 1 1 1 0 Cadherin-like beta sandwich domain MFS_2 PF13347.1 gi|257386527|ref|YP_003176300.1| - 0.15 10.4 0.0 0.2 9.9 0.0 1.1 1 0 0 1 1 1 0 MFS/sugar transport protein AAA_10 PF12846.2 gi|257386528|ref|YP_003176301.1| - 0.082 12.3 0.0 0.31 10.4 0.0 1.9 3 0 0 3 3 3 0 AAA-like domain HTH_23 PF13384.1 gi|257386531|ref|YP_003176304.1| - 0.0061 16.1 0.0 0.024 14.2 0.0 2.0 1 0 0 1 1 1 1 Homeodomain-like domain HTH_28 PF13518.1 gi|257386531|ref|YP_003176304.1| - 0.021 14.8 0.0 0.059 13.3 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_11 PF08279.7 gi|257386531|ref|YP_003176304.1| - 0.03 13.9 0.0 0.069 12.8 0.0 1.5 1 0 0 1 1 1 0 HTH domain HTH_24 PF13412.1 gi|257386531|ref|YP_003176304.1| - 0.033 13.5 0.0 0.076 12.4 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_29 PF13551.1 gi|257386531|ref|YP_003176304.1| - 0.044 13.9 0.2 0.21 11.7 0.1 2.1 1 1 0 1 1 1 0 Winged helix-turn helix MethyltransfD12 PF02086.10 gi|257386533|ref|YP_003176306.1| - 2.1e-19 70.0 0.0 2.5e-19 69.7 0.0 1.1 1 0 0 1 1 1 1 D12 class N6 adenine-specific DNA methyltransferase IL6 PF00489.12 gi|257386533|ref|YP_003176306.1| - 0.026 14.1 0.0 0.048 13.2 0.0 1.4 1 0 0 1 1 1 0 Interleukin-6/G-CSF/MGF family Phage_integrase PF00589.17 gi|257386535|ref|YP_003176308.1| - 7.7e-13 48.4 0.0 7e-12 45.3 0.0 2.0 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.12 gi|257386535|ref|YP_003176308.1| - 2.7e-06 27.4 0.0 8e-06 25.9 0.0 1.9 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.1 gi|257386535|ref|YP_003176308.1| - 0.0051 17.1 0.0 0.013 15.8 0.0 1.7 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Sigma70_r4_2 PF08281.7 gi|257386536|ref|YP_003176309.1| - 6.2e-05 22.3 0.0 7.8e-05 22.0 0.0 1.1 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_38 PF13936.1 gi|257386536|ref|YP_003176309.1| - 0.0074 15.8 0.0 0.01 15.3 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain Nudix_N_2 PF14803.1 gi|257386537|ref|YP_003176310.1| - 0.0045 16.6 0.9 1.3 8.8 0.0 2.5 2 0 0 2 2 2 2 Nudix N-terminal zinc_ribbon_5 PF13719.1 gi|257386537|ref|YP_003176310.1| - 0.068 12.7 0.5 0.19 11.3 0.1 2.0 2 0 0 2 2 2 0 zinc-ribbon domain Prok-RING_1 PF14446.1 gi|257386537|ref|YP_003176310.1| - 0.071 12.8 1.0 0.11 12.1 0.7 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zinc_ribbon_4 PF13717.1 gi|257386537|ref|YP_003176310.1| - 0.1 12.2 0.5 0.3 10.8 0.1 2.0 2 0 0 2 2 2 0 zinc-ribbon domain RHH_1 PF01402.16 gi|257386538|ref|YP_003176311.1| - 0.00016 21.4 0.0 0.0011 18.7 0.0 1.9 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family Phage_integrase PF00589.17 gi|257386539|ref|YP_003176312.1| - 2.8e-14 53.1 0.0 4.3e-14 52.5 0.0 1.2 1 0 0 1 1 1 1 Phage integrase family Integrase_1 PF12835.2 gi|257386539|ref|YP_003176312.1| - 0.0058 16.4 0.0 0.0096 15.7 0.0 1.2 1 0 0 1 1 1 1 Integrase HTH_23 PF13384.1 gi|257386539|ref|YP_003176312.1| - 0.0068 16.0 0.2 0.13 12.0 0.1 2.5 2 0 0 2 2 2 1 Homeodomain-like domain DUF2910 PF11139.3 gi|257386541|ref|YP_003176314.1| - 0.042 12.9 0.7 0.05 12.7 0.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2910) Tad PF13400.1 gi|257386541|ref|YP_003176314.1| - 0.087 12.8 2.1 0.15 12.1 1.5 1.3 1 0 0 1 1 1 0 Putative Flp pilus-assembly TadE/G-like DUF1206 PF06724.6 gi|257386542|ref|YP_003176315.1| - 0.34 10.7 7.1 0.049 13.3 1.3 2.3 1 1 1 2 2 2 0 Domain of Unknown Function (DUF1206) Tape_meas_lam_C PF09718.5 gi|257386542|ref|YP_003176315.1| - 5 7.1 14.5 9.1 6.2 0.1 3.3 2 1 1 3 3 3 0 Lambda phage tail tape-measure protein (Tape_meas_lam_C) AAA_10 PF12846.2 gi|257386552|ref|YP_003176325.1| - 9.4e-15 54.8 0.0 5.6e-09 35.8 0.0 2.1 1 1 0 2 2 2 2 AAA-like domain Zot PF05707.7 gi|257386552|ref|YP_003176325.1| - 0.0018 17.8 0.2 0.0048 16.3 0.1 1.8 2 0 0 2 2 2 1 Zonular occludens toxin (Zot) AAA_22 PF13401.1 gi|257386552|ref|YP_003176325.1| - 0.0042 17.2 0.0 0.012 15.7 0.0 1.7 1 1 0 1 1 1 1 AAA domain DUF87 PF01935.12 gi|257386552|ref|YP_003176325.1| - 0.1 12.4 0.0 0.14 11.9 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function DUF87 FtsK_SpoIIIE PF01580.13 gi|257386552|ref|YP_003176325.1| - 0.12 11.8 0.0 1.4 8.3 0.0 2.1 2 0 0 2 2 2 0 FtsK/SpoIIIE family Suf PF05843.9 gi|257386556|ref|YP_003176329.1| - 0.094 12.4 2.9 0.11 12.2 2.0 1.2 1 0 0 1 1 1 0 Suppressor of forked protein (Suf) Gram_pos_anchor PF00746.16 gi|257386556|ref|YP_003176329.1| - 0.79 9.5 4.2 1.5 8.7 2.9 1.4 1 0 0 1 1 1 0 Gram positive anchor SGT1 PF07093.6 gi|257386556|ref|YP_003176329.1| - 0.8 8.0 13.5 0.98 7.7 9.3 1.1 1 0 0 1 1 1 0 SGT1 protein DUF2782 PF11191.3 gi|257386556|ref|YP_003176329.1| - 1.2 9.1 5.0 2.6 8.0 2.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2782) Lin-8 PF03353.10 gi|257386556|ref|YP_003176329.1| - 1.5 8.0 9.1 1.7 7.8 6.3 1.2 1 0 0 1 1 1 0 Ras-mediated vulval-induction antagonist Zip PF02535.17 gi|257386556|ref|YP_003176329.1| - 5.1 6.0 5.1 8 5.3 3.5 1.4 1 1 0 1 1 1 0 ZIP Zinc transporter DivIVA PF05103.8 gi|257386557|ref|YP_003176330.1| - 0.082 12.9 0.1 0.082 12.9 0.0 2.3 2 0 0 2 2 2 0 DivIVA protein Methyltransf_26 PF13659.1 gi|257386558|ref|YP_003176331.1| - 0.0029 17.6 0.0 0.0039 17.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain ASCH PF04266.9 gi|257386559|ref|YP_003176332.1| - 3.2e-05 24.2 0.0 3.9e-05 23.9 0.0 1.1 1 0 0 1 1 1 1 ASCH domain Cg6151-P PF10233.4 gi|257386559|ref|YP_003176332.1| - 0.11 12.4 0.0 0.14 12.1 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein CG6151-P HTH_27 PF13463.1 gi|257386561|ref|YP_003176334.1| - 0.0066 16.7 0.0 0.011 16.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.14 gi|257386561|ref|YP_003176334.1| - 0.046 13.6 0.0 0.08 12.8 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.14 gi|257386561|ref|YP_003176334.1| - 0.048 13.3 0.1 0.073 12.7 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|257386561|ref|YP_003176334.1| - 0.063 12.9 0.0 0.099 12.3 0.0 1.3 1 0 0 1 1 1 0 MarR family MarR_2 PF12802.2 gi|257386561|ref|YP_003176334.1| - 0.073 12.7 0.0 0.13 11.9 0.0 1.4 1 0 0 1 1 1 0 MarR family RHH_1 PF01402.16 gi|257386561|ref|YP_003176334.1| - 0.09 12.6 0.1 0.61 10.0 0.0 2.2 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family SWIM PF04434.12 gi|257386563|ref|YP_003176336.1| - 0.07 12.6 0.1 0.12 11.9 0.1 1.3 1 0 0 1 1 1 0 SWIM zinc finger Sigma70_r4_2 PF08281.7 gi|257386563|ref|YP_003176336.1| - 0.14 11.6 0.0 0.22 11.0 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 Ribosomal_S10 PF00338.17 gi|257386564|ref|YP_003176337.1| - 9.4e-29 99.1 0.0 1e-28 99.0 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e GTP_EFTU PF00009.22 gi|257386565|ref|YP_003176338.1| - 1e-57 194.6 0.0 1.3e-57 194.2 0.0 1.1 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.12 gi|257386565|ref|YP_003176338.1| - 4.1e-30 103.8 0.1 1.3e-29 102.2 0.0 1.8 2 0 0 2 2 2 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.20 gi|257386565|ref|YP_003176338.1| - 1.8e-17 63.1 3.5 4.1e-17 62.0 1.1 2.3 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|257386565|ref|YP_003176338.1| - 6.1e-07 29.4 0.0 1.2e-06 28.4 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase Miro PF08477.8 gi|257386565|ref|YP_003176338.1| - 3.3e-05 24.3 0.0 0.00048 20.6 0.0 2.6 2 1 0 2 2 2 1 Miro-like protein GTP_EFTU_D4 PF14578.1 gi|257386565|ref|YP_003176338.1| - 3.8e-05 23.2 0.3 0.00016 21.2 0.1 2.1 2 0 0 2 2 2 1 Elongation factor Tu domain 4 Dynamin_N PF00350.18 gi|257386565|ref|YP_003176338.1| - 0.005 16.6 0.0 2.8 7.7 0.0 2.4 1 1 1 2 2 2 2 Dynamin family Gtr1_RagA PF04670.7 gi|257386565|ref|YP_003176338.1| - 0.0056 15.8 0.0 0.046 12.8 0.0 2.1 2 0 0 2 2 2 1 Gtr1/RagA G protein conserved region SRPRB PF09439.5 gi|257386565|ref|YP_003176338.1| - 0.016 14.4 0.0 0.7 9.0 0.0 2.2 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit FeoB_N PF02421.13 gi|257386565|ref|YP_003176338.1| - 0.024 13.8 0.0 0.44 9.8 0.0 2.4 2 1 0 2 2 2 0 Ferrous iron transport protein B CbiA PF01656.18 gi|257386565|ref|YP_003176338.1| - 0.092 12.1 0.1 0.18 11.2 0.0 1.5 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain Septin PF00735.13 gi|257386565|ref|YP_003176338.1| - 0.15 11.0 0.0 0.33 9.9 0.0 1.4 1 1 0 1 1 1 0 Septin Homoserine_dh PF00742.14 gi|257386566|ref|YP_003176339.1| - 5.7e-49 166.2 0.1 8.2e-49 165.6 0.0 1.2 1 0 0 1 1 1 1 Homoserine dehydrogenase ELFV_dehydrog PF00208.16 gi|257386566|ref|YP_003176339.1| - 1.6e-09 37.7 0.2 2.9e-09 36.8 0.1 1.4 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NAD_binding_3 PF03447.11 gi|257386566|ref|YP_003176339.1| - 1.8e-05 25.1 1.0 4.8e-05 23.7 0.7 1.8 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain 3HCDH_N PF02737.13 gi|257386566|ref|YP_003176339.1| - 0.0036 16.9 0.3 0.0055 16.3 0.2 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.18 gi|257386566|ref|YP_003176339.1| - 0.023 14.4 0.3 0.042 13.5 0.2 1.4 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.11 gi|257386566|ref|YP_003176339.1| - 0.024 14.0 0.0 0.037 13.4 0.0 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NAD_binding_10 PF13460.1 gi|257386566|ref|YP_003176339.1| - 0.05 13.6 5.3 0.039 13.9 2.1 2.0 2 1 0 2 2 2 0 NADH(P)-binding 2-Hacid_dh_C PF02826.14 gi|257386566|ref|YP_003176339.1| - 0.091 11.9 0.2 0.15 11.2 0.1 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ACT PF01842.20 gi|257386567|ref|YP_003176340.1| - 2.7e-05 23.5 0.2 0.012 15.1 0.0 2.9 3 0 0 3 3 3 2 ACT domain Peptidase_S74 PF13884.1 gi|257386568|ref|YP_003176341.1| - 3.1e-05 23.9 0.0 6.3e-05 23.0 0.0 1.5 1 0 0 1 1 1 1 Chaperone of endosialidase ATG16 PF08614.6 gi|257386568|ref|YP_003176341.1| - 0.009 15.8 1.4 0.014 15.1 1.0 1.3 1 0 0 1 1 1 1 Autophagy protein 16 (ATG16) HSBP1 PF06825.7 gi|257386568|ref|YP_003176341.1| - 0.0097 15.4 2.1 0.048 13.2 0.4 2.4 2 1 0 2 2 2 1 Heat shock factor binding protein 1 DUF3552 PF12072.3 gi|257386568|ref|YP_003176341.1| - 0.015 14.5 6.4 0.02 14.0 4.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) IncA PF04156.9 gi|257386568|ref|YP_003176341.1| - 0.039 13.5 5.4 0.061 12.9 3.7 1.2 1 0 0 1 1 1 0 IncA protein Fmp27_WPPW PF10359.4 gi|257386568|ref|YP_003176341.1| - 0.048 12.0 0.1 0.064 11.6 0.1 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain CENP-F_leu_zip PF10473.4 gi|257386568|ref|YP_003176341.1| - 0.06 13.2 10.3 0.025 14.4 5.4 1.7 2 1 0 2 2 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 TMF_TATA_bd PF12325.3 gi|257386568|ref|YP_003176341.1| - 0.072 12.8 8.2 0.12 12.0 5.7 1.3 1 0 0 1 1 1 0 TATA element modulatory factor 1 TATA binding SlyX PF04102.7 gi|257386568|ref|YP_003176341.1| - 0.084 13.2 6.4 0.18 12.2 3.3 2.2 2 0 0 2 2 2 0 SlyX DUF641 PF04859.7 gi|257386568|ref|YP_003176341.1| - 0.087 12.5 0.8 0.16 11.7 0.6 1.3 1 0 0 1 1 1 0 Plant protein of unknown function (DUF641) TMF_DNA_bd PF12329.3 gi|257386568|ref|YP_003176341.1| - 0.099 12.4 6.6 0.25 11.1 4.6 1.6 1 1 0 1 1 1 0 TATA element modulatory factor 1 DNA binding Spectrin PF00435.16 gi|257386568|ref|YP_003176341.1| - 0.13 12.5 3.2 0.26 11.6 2.3 1.5 1 0 0 1 1 1 0 Spectrin repeat Spc7 PF08317.6 gi|257386568|ref|YP_003176341.1| - 0.29 9.7 1.8 0.39 9.3 1.2 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein bZIP_1 PF00170.16 gi|257386568|ref|YP_003176341.1| - 0.32 10.9 4.8 4.2 7.3 2.0 3.0 2 1 2 4 4 4 0 bZIP transcription factor Atg14 PF10186.4 gi|257386568|ref|YP_003176341.1| - 0.34 9.8 1.4 0.48 9.3 1.0 1.1 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 DUF1664 PF07889.7 gi|257386568|ref|YP_003176341.1| - 0.36 10.6 1.0 0.63 9.8 0.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) DUF2730 PF10805.3 gi|257386568|ref|YP_003176341.1| - 0.45 10.2 2.2 1.4 8.7 1.5 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF2730) FlgN PF05130.7 gi|257386568|ref|YP_003176341.1| - 0.48 10.6 6.1 0.87 9.8 4.2 1.3 1 0 0 1 1 1 0 FlgN protein BLOC1_2 PF10046.4 gi|257386568|ref|YP_003176341.1| - 0.84 9.8 2.3 0.79 9.9 0.6 1.7 2 0 0 2 2 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Med4 PF10018.4 gi|257386568|ref|YP_003176341.1| - 3.3 7.0 5.9 32 3.8 4.1 2.1 1 1 0 1 1 1 0 Vitamin-D-receptor interacting Mediator subunit 4 DivIC PF04977.10 gi|257386568|ref|YP_003176341.1| - 6.4 6.3 7.0 2.4 7.7 1.4 2.5 2 1 1 3 3 3 0 Septum formation initiator PhoU PF01895.14 gi|257386568|ref|YP_003176341.1| - 9.2 6.7 11.0 15 6.0 2.5 2.4 1 1 1 2 2 2 0 PhoU domain HATPase_c PF02518.21 gi|257386569|ref|YP_003176342.1| - 3.4e-14 52.4 0.1 6.9e-14 51.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|257386569|ref|YP_003176342.1| - 6.6e-05 22.8 1.1 0.37 10.8 0.1 2.9 2 0 0 2 2 2 2 PAS fold HisKA PF00512.20 gi|257386569|ref|YP_003176342.1| - 8.8e-05 22.4 1.0 0.00022 21.1 0.7 1.7 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.1 gi|257386569|ref|YP_003176342.1| - 0.002 17.7 0.0 0.0057 16.3 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.19 gi|257386569|ref|YP_003176342.1| - 0.0027 17.4 0.3 0.036 13.8 0.1 2.6 3 0 0 3 3 3 1 PAS fold PAS_8 PF13188.1 gi|257386569|ref|YP_003176342.1| - 0.0064 16.3 0.0 0.02 14.7 0.0 1.9 1 0 0 1 1 1 1 PAS domain PAS_9 PF13426.1 gi|257386569|ref|YP_003176342.1| - 0.029 14.7 0.2 0.17 12.3 0.1 2.2 1 1 0 1 1 1 0 PAS domain HATPase_c PF02518.21 gi|257386570|ref|YP_003176343.1| - 4.4e-20 71.4 0.0 9e-20 70.4 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|257386570|ref|YP_003176343.1| - 2e-12 46.9 0.3 7.2e-12 45.1 0.0 2.1 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.5 gi|257386570|ref|YP_003176343.1| - 3.4e-05 23.8 1.4 3.4e-05 23.8 0.9 2.1 2 0 0 2 2 2 1 PAS fold PAS_8 PF13188.1 gi|257386570|ref|YP_003176343.1| - 5.7e-05 22.8 0.7 0.00035 20.3 0.1 2.5 2 0 0 2 2 2 1 PAS domain PAS PF00989.19 gi|257386570|ref|YP_003176343.1| - 0.00015 21.5 0.2 0.00056 19.6 0.1 2.0 2 1 0 2 2 2 1 PAS fold HATPase_c_3 PF13589.1 gi|257386570|ref|YP_003176343.1| - 0.0013 18.4 0.0 0.0024 17.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|257386570|ref|YP_003176343.1| - 0.072 13.4 0.0 0.13 12.6 0.0 1.5 1 0 0 1 1 1 0 PAS domain Glyoxalase_2 PF12681.2 gi|257386571|ref|YP_003176344.1| - 1.1e-08 35.5 0.1 1.4e-08 35.2 0.1 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.20 gi|257386571|ref|YP_003176344.1| - 0.007 16.3 0.0 0.032 14.1 0.0 1.8 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily GTP_EFTU PF00009.22 gi|257386572|ref|YP_003176345.1| - 3.3e-61 206.0 0.4 5.8e-61 205.2 0.3 1.4 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_IV PF03764.13 gi|257386572|ref|YP_003176345.1| - 8.4e-24 83.4 0.0 2.5e-23 81.9 0.0 1.8 1 0 0 1 1 1 1 Elongation factor G, domain IV EFG_C PF00679.19 gi|257386572|ref|YP_003176345.1| - 8.1e-23 80.1 0.0 1.4e-21 76.1 0.0 2.6 2 0 0 2 2 2 1 Elongation factor G C-terminus EFG_II PF14492.1 gi|257386572|ref|YP_003176345.1| - 1e-21 76.5 0.4 1e-21 76.5 0.3 1.9 2 0 0 2 2 2 1 Elongation Factor G, domain II GTP_EFTU_D2 PF03144.20 gi|257386572|ref|YP_003176345.1| - 7.9e-17 61.1 2.7 2.2e-16 59.6 0.9 2.6 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|257386572|ref|YP_003176345.1| - 1e-05 25.4 0.1 3.5e-05 23.7 0.0 1.9 2 0 0 2 2 2 1 50S ribosome-binding GTPase SRPRB PF09439.5 gi|257386572|ref|YP_003176345.1| - 0.085 12.0 0.2 0.28 10.3 0.1 1.9 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit CbiQ PF02361.11 gi|257386574|ref|YP_003176347.1| - 6.9e-13 48.6 3.7 2.4e-12 46.8 2.5 1.7 1 1 0 1 1 1 1 Cobalt transport protein ABC_tran PF00005.22 gi|257386575|ref|YP_003176348.1| - 7.4e-30 104.0 0.0 1e-29 103.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|257386575|ref|YP_003176348.1| - 2.6e-09 37.4 0.0 0.00048 20.1 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|257386575|ref|YP_003176348.1| - 6.4e-07 28.8 0.1 1.3e-06 27.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|257386575|ref|YP_003176348.1| - 3.8e-06 26.9 2.2 1.9e-05 24.7 1.3 2.2 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.14 gi|257386575|ref|YP_003176348.1| - 3.9e-06 26.2 0.1 4.1e-05 22.9 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_5 PF07728.9 gi|257386575|ref|YP_003176348.1| - 6.2e-06 25.9 0.1 0.00028 20.6 0.0 2.7 3 1 0 3 3 3 1 AAA domain (dynein-related subfamily) AAA_10 PF12846.2 gi|257386575|ref|YP_003176348.1| - 9.4e-05 21.9 0.0 0.11 11.9 0.0 2.2 2 0 0 2 2 2 2 AAA-like domain AAA_22 PF13401.1 gi|257386575|ref|YP_003176348.1| - 9.6e-05 22.5 0.1 0.00093 19.3 0.0 2.2 1 1 0 1 1 1 1 AAA domain Mg_chelatase PF01078.16 gi|257386575|ref|YP_003176348.1| - 0.00013 21.2 0.0 0.00027 20.1 0.0 1.5 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_19 PF13245.1 gi|257386575|ref|YP_003176348.1| - 0.00028 20.5 1.2 0.011 15.4 0.0 2.9 2 2 0 2 2 2 1 Part of AAA domain AAA_23 PF13476.1 gi|257386575|ref|YP_003176348.1| - 0.00087 19.6 0.0 0.001 19.4 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|257386575|ref|YP_003176348.1| - 0.0016 18.2 0.1 0.0024 17.7 0.0 1.6 1 1 0 1 1 1 1 AAA domain G-alpha PF00503.15 gi|257386575|ref|YP_003176348.1| - 0.0016 17.1 0.0 0.0022 16.7 0.0 1.1 1 0 0 1 1 1 1 G-protein alpha subunit Zeta_toxin PF06414.7 gi|257386575|ref|YP_003176348.1| - 0.0019 17.3 0.0 0.0036 16.4 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin SbcCD_C PF13558.1 gi|257386575|ref|YP_003176348.1| - 0.0044 16.9 0.5 0.04 13.8 0.1 2.4 2 1 0 2 2 1 1 Putative exonuclease SbcCD, C subunit AAA_14 PF13173.1 gi|257386575|ref|YP_003176348.1| - 0.0048 16.8 0.0 0.0088 15.9 0.0 1.5 1 0 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|257386575|ref|YP_003176348.1| - 0.0051 16.4 0.0 0.011 15.3 0.0 1.6 1 0 0 1 1 1 1 NACHT domain AAA PF00004.24 gi|257386575|ref|YP_003176348.1| - 0.0084 16.3 0.0 0.018 15.2 0.0 1.8 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) UPF0079 PF02367.12 gi|257386575|ref|YP_003176348.1| - 0.012 15.2 0.1 0.028 14.0 0.0 1.6 1 1 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 MobB PF03205.9 gi|257386575|ref|YP_003176348.1| - 0.012 15.2 0.1 0.027 14.1 0.0 1.6 2 0 0 2 2 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_17 PF13207.1 gi|257386575|ref|YP_003176348.1| - 0.013 16.2 0.1 0.031 15.0 0.1 2.0 1 1 0 1 1 1 0 AAA domain KaiC PF06745.8 gi|257386575|ref|YP_003176348.1| - 0.014 14.5 0.0 0.051 12.6 0.0 1.8 2 0 0 2 2 2 0 KaiC AAA_13 PF13166.1 gi|257386575|ref|YP_003176348.1| - 0.018 13.5 0.0 0.15 10.4 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|257386575|ref|YP_003176348.1| - 0.018 14.4 0.6 0.095 12.0 0.0 2.3 2 1 0 2 2 2 0 AAA domain ATP_bind_1 PF03029.12 gi|257386575|ref|YP_003176348.1| - 0.021 14.3 0.0 0.17 11.4 0.0 2.0 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_15 PF13175.1 gi|257386575|ref|YP_003176348.1| - 0.022 13.8 0.0 2.1 7.3 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_24 PF13479.1 gi|257386575|ref|YP_003176348.1| - 0.026 14.1 0.0 0.043 13.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain DEAD PF00270.24 gi|257386575|ref|YP_003176348.1| - 0.026 14.0 0.3 1.2 8.6 0.0 2.2 2 1 0 2 2 2 0 DEAD/DEAH box helicase AAA_30 PF13604.1 gi|257386575|ref|YP_003176348.1| - 0.026 14.0 0.0 0.052 13.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|257386575|ref|YP_003176348.1| - 0.029 14.3 0.0 0.053 13.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.17 gi|257386575|ref|YP_003176348.1| - 0.03 13.7 0.0 0.052 12.9 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Arch_ATPase PF01637.13 gi|257386575|ref|YP_003176348.1| - 0.044 13.4 0.0 0.094 12.3 0.0 1.5 2 0 0 2 2 1 0 Archaeal ATPase NTPase_1 PF03266.10 gi|257386575|ref|YP_003176348.1| - 0.045 13.4 0.0 0.21 11.2 0.0 1.9 2 0 0 2 2 2 0 NTPase ABC_ATPase PF09818.4 gi|257386575|ref|YP_003176348.1| - 0.057 11.9 1.1 1.5 7.3 0.2 2.3 2 1 0 2 2 2 0 Predicted ATPase of the ABC class PduV-EutP PF10662.4 gi|257386575|ref|YP_003176348.1| - 0.07 12.6 0.0 0.11 11.9 0.0 1.3 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation cobW PF02492.14 gi|257386575|ref|YP_003176348.1| - 0.084 12.3 0.2 0.17 11.3 0.0 1.6 2 0 0 2 2 1 0 CobW/HypB/UreG, nucleotide-binding domain T2SE PF00437.15 gi|257386575|ref|YP_003176348.1| - 0.084 11.7 0.0 0.13 11.1 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein Sigma54_activ_2 PF14532.1 gi|257386575|ref|YP_003176348.1| - 0.087 12.8 0.0 0.17 11.8 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain MutS_V PF00488.16 gi|257386575|ref|YP_003176348.1| - 0.11 11.9 0.0 0.22 10.8 0.0 1.4 2 0 0 2 2 1 0 MutS domain V DUF258 PF03193.11 gi|257386575|ref|YP_003176348.1| - 0.13 11.4 0.0 0.18 10.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_18 PF13238.1 gi|257386575|ref|YP_003176348.1| - 0.13 12.5 0.0 0.51 10.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain ATP-synt_ab PF00006.20 gi|257386575|ref|YP_003176348.1| - 0.17 11.3 0.2 0.58 9.6 0.1 2.1 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain SRPRB PF09439.5 gi|257386575|ref|YP_003176348.1| - 0.18 11.0 0.0 0.29 10.3 0.0 1.3 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit zf-HC2 PF13490.1 gi|257386575|ref|YP_003176348.1| - 3.3 7.7 5.4 37 4.3 0.0 3.5 3 1 0 3 3 3 0 Putative zinc-finger BioY PF02632.9 gi|257386576|ref|YP_003176349.1| - 1.1e-30 106.2 21.7 1.1e-30 106.2 15.0 1.4 2 0 0 2 2 2 1 BioY family DUF3816 PF12822.2 gi|257386576|ref|YP_003176349.1| - 0.0028 17.5 14.8 0.0039 17.0 10.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3816) ECF-ribofla_trS PF07155.7 gi|257386576|ref|YP_003176349.1| - 0.067 12.9 16.0 0.86 9.3 11.1 2.2 1 1 0 1 1 1 0 ECF-type riboflavin transporter, S component Ribosomal_S7 PF00177.16 gi|257386577|ref|YP_003176350.1| - 3.5e-38 130.5 1.7 4e-38 130.3 1.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e CBFD_NFYB_HMF PF00808.18 gi|257386577|ref|YP_003176350.1| - 0.057 13.4 0.1 0.15 12.1 0.0 1.7 1 0 0 1 1 1 0 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Phage_connect_1 PF05135.8 gi|257386577|ref|YP_003176350.1| - 0.06 13.5 0.4 3.1 8.0 0.1 2.4 2 0 0 2 2 2 0 Phage gp6-like head-tail connector protein Ribosom_S12_S23 PF00164.20 gi|257386578|ref|YP_003176351.1| - 1.9e-40 137.1 0.1 2.1e-40 136.9 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S12/S23 KH_2 PF07650.12 gi|257386579|ref|YP_003176352.1| - 5e-17 61.2 0.1 9.6e-11 41.0 0.0 2.1 1 1 1 2 2 2 2 KH domain KH_5 PF13184.1 gi|257386579|ref|YP_003176352.1| - 1e-08 34.8 0.8 4.4e-08 32.8 0.1 2.1 2 0 0 2 2 2 1 NusA-like KH domain KH_4 PF13083.1 gi|257386579|ref|YP_003176352.1| - 8.9e-07 28.4 0.1 5.9e-05 22.6 0.0 2.1 2 0 0 2 2 2 1 KH domain KH_1 PF00013.24 gi|257386579|ref|YP_003176352.1| - 0.012 15.2 0.6 3.4 7.3 0.0 2.8 2 1 1 3 3 3 0 KH domain PRC PF05239.11 gi|257386579|ref|YP_003176352.1| - 0.046 13.5 2.8 4.3 7.2 0.3 2.2 2 0 0 2 2 2 0 PRC-barrel domain KH_3 PF13014.1 gi|257386579|ref|YP_003176352.1| - 0.11 12.1 0.7 16 5.3 0.0 3.2 3 0 0 3 3 3 0 KH domain RNA_pol_Rpb1_5 PF04998.12 gi|257386580|ref|YP_003176353.1| - 4.5e-49 167.1 0.8 5.7e-49 166.8 0.6 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 DUF1386 PF07138.6 gi|257386580|ref|YP_003176353.1| - 0.048 12.7 0.1 0.083 11.9 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1386) DUF4355 PF14265.1 gi|257386580|ref|YP_003176353.1| - 0.061 13.2 9.2 0.29 11.0 0.8 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF4355) HTH_43 PF09904.4 gi|257386580|ref|YP_003176353.1| - 0.096 12.5 0.0 0.27 11.0 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn helix RNA_pol_Rpb1_1 PF04997.7 gi|257386581|ref|YP_003176354.1| - 9.8e-89 297.9 0.0 1.8e-88 297.0 0.0 1.4 1 1 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.15 gi|257386581|ref|YP_003176354.1| - 4.3e-65 218.7 0.1 7.1e-65 217.9 0.1 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_4 PF05000.12 gi|257386581|ref|YP_003176354.1| - 3.4e-32 110.3 0.0 8.8e-32 109.0 0.0 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_3 PF04983.13 gi|257386581|ref|YP_003176354.1| - 4.2e-30 104.5 0.0 7.2e-30 103.8 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_5 PF04998.12 gi|257386581|ref|YP_003176354.1| - 2.9e-29 102.1 0.0 5.3e-29 101.3 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 HTH_3 PF01381.17 gi|257386581|ref|YP_003176354.1| - 3.3e-06 26.8 0.0 9.3e-06 25.3 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix MarR_2 PF12802.2 gi|257386581|ref|YP_003176354.1| - 0.0058 16.2 0.0 0.017 14.7 0.0 1.8 1 0 0 1 1 1 1 MarR family HTH_31 PF13560.1 gi|257386581|ref|YP_003176354.1| - 0.0089 16.2 0.1 0.031 14.4 0.1 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain NotI PF12183.3 gi|257386581|ref|YP_003176354.1| - 0.068 12.2 0.1 0.12 11.4 0.1 1.3 1 0 0 1 1 1 0 Restriction endonuclease NotI HTH_19 PF12844.2 gi|257386581|ref|YP_003176354.1| - 0.11 12.6 0.0 0.33 11.0 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.1 gi|257386581|ref|YP_003176354.1| - 0.12 11.7 0.0 0.35 10.2 0.0 1.8 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding RNA_pol_Rpb2_6 PF00562.23 gi|257386582|ref|YP_003176355.1| - 5e-121 404.0 0.0 8.2e-121 403.3 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_7 PF04560.15 gi|257386582|ref|YP_003176355.1| - 5.5e-29 100.2 0.1 9.8e-29 99.4 0.1 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_4 PF04566.8 gi|257386582|ref|YP_003176355.1| - 2.2e-25 88.2 0.4 4.7e-25 87.1 0.3 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.12 gi|257386582|ref|YP_003176355.1| - 5.4e-12 45.4 4.0 1.3e-11 44.2 2.8 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 5 OrfB_Zn_ribbon PF07282.6 gi|257386582|ref|YP_003176355.1| - 0.013 15.1 1.1 0.027 14.1 0.8 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DZR PF12773.2 gi|257386582|ref|YP_003176355.1| - 0.017 14.9 0.4 0.031 14.1 0.3 1.3 1 0 0 1 1 1 0 Double zinc ribbon Auto_anti-p27 PF06677.7 gi|257386582|ref|YP_003176355.1| - 0.039 13.7 0.8 0.07 12.9 0.5 1.4 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) RNA_pol_Rpb2_1 PF04563.10 gi|257386583|ref|YP_003176356.1| - 2.8e-53 179.8 0.0 3.4e-53 179.5 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_2 PF04561.9 gi|257386583|ref|YP_003176356.1| - 3.2e-26 91.9 0.0 5.4e-26 91.1 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_3 PF04565.11 gi|257386583|ref|YP_003176356.1| - 4.3e-23 80.8 0.0 8.5e-23 79.8 0.0 1.5 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb5_C PF01191.14 gi|257386584|ref|YP_003176357.1| - 1.4e-25 88.6 1.3 1.5e-25 88.5 0.9 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain DUF3006 PF11213.3 gi|257386584|ref|YP_003176357.1| - 0.085 12.6 0.4 1.9 8.3 0.3 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF3006) CorA PF01544.13 gi|257386585|ref|YP_003176358.1| - 0.035 13.1 1.5 0.29 10.1 0.1 2.0 2 0 0 2 2 2 0 CorA-like Mg2+ transporter protein DivIC PF04977.10 gi|257386585|ref|YP_003176358.1| - 0.1 12.0 4.4 0.12 11.8 0.5 2.2 2 0 0 2 2 2 0 Septum formation initiator PP-binding_2 PF14573.1 gi|257386585|ref|YP_003176358.1| - 0.11 12.5 2.6 0.22 11.5 0.2 2.5 2 1 1 3 3 3 0 Acyl-carrier IncA PF04156.9 gi|257386585|ref|YP_003176358.1| - 0.12 11.9 0.8 1.1 8.7 0.1 2.3 2 1 0 2 2 2 0 IncA protein DUF2312 PF10073.4 gi|257386585|ref|YP_003176358.1| - 0.49 9.7 5.4 0.28 10.5 1.2 2.3 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2312) DUF1192 PF06698.6 gi|257386585|ref|YP_003176358.1| - 4.8 7.0 8.7 9.7 6.0 1.6 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1192) TrmB PF01978.14 gi|257386586|ref|YP_003176359.1| - 3.1e-05 23.5 0.0 4.6e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|257386586|ref|YP_003176359.1| - 0.00011 21.5 0.0 0.00019 20.7 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding PspB PF06667.7 gi|257386586|ref|YP_003176359.1| - 0.0041 17.0 0.7 0.19 11.7 0.0 2.3 2 0 0 2 2 2 1 Phage shock protein B HTH_5 PF01022.15 gi|257386586|ref|YP_003176359.1| - 0.0042 16.7 0.1 0.0074 15.9 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|257386586|ref|YP_003176359.1| - 0.0068 16.1 0.1 0.032 14.0 0.0 2.0 1 1 1 2 2 2 1 Helix-turn-helix domain GntR PF00392.16 gi|257386586|ref|YP_003176359.1| - 0.017 14.5 0.1 0.029 13.8 0.0 1.5 1 1 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_12 PF08461.5 gi|257386586|ref|YP_003176359.1| - 0.024 14.3 0.3 0.076 12.7 0.1 2.0 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_AsnC-type PF13404.1 gi|257386586|ref|YP_003176359.1| - 0.035 13.6 0.1 0.12 11.9 0.0 1.9 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain Rrf2 PF02082.15 gi|257386586|ref|YP_003176359.1| - 0.062 13.4 0.0 0.39 10.8 0.0 1.9 1 1 1 2 2 2 0 Transcriptional regulator HTH_DeoR PF08220.7 gi|257386586|ref|YP_003176359.1| - 0.085 12.4 0.0 0.17 11.4 0.0 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain FaeA PF04703.7 gi|257386586|ref|YP_003176359.1| - 0.11 12.7 0.0 0.16 12.1 0.0 1.3 1 0 0 1 1 1 0 FaeA-like protein HTH_Mga PF08280.6 gi|257386586|ref|YP_003176359.1| - 0.13 12.0 0.0 0.23 11.2 0.0 1.4 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain CRCB PF02537.10 gi|257386587|ref|YP_003176360.1| - 2.3e-20 72.6 14.5 2.7e-20 72.3 10.0 1.1 1 0 0 1 1 1 1 CrcB-like protein CRCB PF02537.10 gi|257386588|ref|YP_003176361.1| - 9.2e-27 93.2 10.7 1.1e-26 93.0 7.4 1.0 1 0 0 1 1 1 1 CrcB-like protein MFS_3 PF05977.8 gi|257386588|ref|YP_003176361.1| - 5.9 4.8 11.5 7.4 4.5 7.9 1.0 1 0 0 1 1 1 0 Transmembrane secretion effector Big_1 PF02369.11 gi|257386589|ref|YP_003176362.1| - 6.3e-10 38.8 5.7 9.4e-10 38.3 4.0 1.3 1 0 0 1 1 1 1 Bacterial Ig-like domain (group 1) CarboxypepD_reg PF13620.1 gi|257386589|ref|YP_003176362.1| - 7.6e-05 22.6 8.5 0.00015 21.7 5.1 2.1 2 1 0 2 2 2 1 Carboxypeptidase regulatory-like domain YtkA PF13115.1 gi|257386589|ref|YP_003176362.1| - 0.00013 22.2 2.6 0.00051 20.3 1.8 1.9 1 1 0 1 1 1 1 YtkA-like DUF4198 PF10670.4 gi|257386589|ref|YP_003176362.1| - 0.00062 19.8 1.8 0.00094 19.2 1.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4198) DUF4480 PF13715.1 gi|257386589|ref|YP_003176362.1| - 0.016 15.2 1.2 0.033 14.2 0.9 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4480) DUF824 PF05688.6 gi|257386589|ref|YP_003176362.1| - 0.027 14.1 2.9 0.038 13.6 0.5 2.2 2 0 0 2 2 2 0 Salmonella repeat of unknown function (DUF824) 4_1_CTD PF05902.8 gi|257386589|ref|YP_003176362.1| - 0.046 13.7 0.5 0.21 11.6 0.4 1.9 1 1 0 1 1 1 0 4.1 protein C-terminal domain (CTD) Big_3_4 PF13754.1 gi|257386589|ref|YP_003176362.1| - 0.085 13.1 14.5 0.18 12.1 1.9 2.6 2 1 0 2 2 2 0 Bacterial Ig-like domain (group 3) Big_2 PF02368.13 gi|257386589|ref|YP_003176362.1| - 0.42 10.5 10.3 0.93 9.4 6.5 2.2 1 1 1 2 2 2 0 Bacterial Ig-like domain (group 2) Big_3 PF07523.7 gi|257386589|ref|YP_003176362.1| - 0.72 9.9 6.0 0.95 9.5 3.7 1.5 1 1 0 1 1 1 0 Bacterial Ig-like domain (group 3) MacB_PCD PF12704.2 gi|257386589|ref|YP_003176362.1| - 0.81 9.2 6.7 0.58 9.6 1.1 2.0 1 1 1 2 2 2 0 MacB-like periplasmic core domain Tubulin PF00091.20 gi|257386590|ref|YP_003176363.1| - 6.2e-23 81.7 0.0 1.1e-22 80.9 0.0 1.4 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.1 gi|257386590|ref|YP_003176363.1| - 0.026 13.4 0.0 0.04 12.8 0.0 1.3 1 0 0 1 1 1 0 Tubulin like PCMT PF01135.14 gi|257386591|ref|YP_003176364.1| - 1.6e-36 125.8 0.0 2.1e-36 125.4 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.9 gi|257386591|ref|YP_003176364.1| - 5.5e-05 22.6 0.0 8.7e-05 21.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|257386591|ref|YP_003176364.1| - 9.1e-05 22.0 0.0 0.00012 21.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|257386591|ref|YP_003176364.1| - 0.0006 19.8 1.2 0.0013 18.7 0.8 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|257386591|ref|YP_003176364.1| - 0.0022 18.5 0.1 0.0046 17.5 0.0 1.6 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|257386591|ref|YP_003176364.1| - 0.019 15.4 0.0 0.35 11.3 0.0 2.3 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_11 PF08241.7 gi|257386591|ref|YP_003176364.1| - 0.044 14.2 0.0 0.1 13.0 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain Fibrillarin PF01269.12 gi|257386591|ref|YP_003176364.1| - 0.06 12.2 0.0 0.083 11.7 0.0 1.2 1 0 0 1 1 1 0 Fibrillarin RrnaAD PF00398.15 gi|257386591|ref|YP_003176364.1| - 0.18 10.8 0.0 0.36 9.8 0.0 1.4 2 0 0 2 2 2 0 Ribosomal RNA adenine dimethylase DUF4131 PF13567.1 gi|257386592|ref|YP_003176365.1| - 2.2 7.6 8.0 1.6 8.0 0.7 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) PCMT PF01135.14 gi|257386593|ref|YP_003176366.1| - 4.2e-60 202.8 0.0 4.8e-60 202.6 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_18 PF12847.2 gi|257386593|ref|YP_003176366.1| - 1.3e-08 35.3 0.0 3.2e-08 34.1 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|257386593|ref|YP_003176366.1| - 4.7e-08 33.0 1.0 2.4e-07 30.8 0.7 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|257386593|ref|YP_003176366.1| - 3.4e-05 23.4 0.0 4.3e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|257386593|ref|YP_003176366.1| - 0.00011 21.3 0.0 0.00016 20.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase GCD14 PF08704.5 gi|257386593|ref|YP_003176366.1| - 0.0013 18.3 0.0 0.0018 17.8 0.0 1.2 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit MTS PF05175.9 gi|257386593|ref|YP_003176366.1| - 0.0071 15.7 0.0 0.011 15.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_11 PF08241.7 gi|257386593|ref|YP_003176366.1| - 0.016 15.6 0.1 0.046 14.1 0.1 1.9 1 1 0 1 1 1 0 Methyltransferase domain Rio2_N PF09202.6 gi|257386593|ref|YP_003176366.1| - 0.026 14.5 0.1 2.4 8.2 0.0 2.3 2 0 0 2 2 2 0 Rio2, N-terminal CMAS PF02353.15 gi|257386593|ref|YP_003176366.1| - 0.027 13.5 0.0 0.039 13.0 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase DUF938 PF06080.7 gi|257386593|ref|YP_003176366.1| - 0.063 12.8 0.0 0.087 12.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF938) Methyltransf_23 PF13489.1 gi|257386593|ref|YP_003176366.1| - 0.07 12.8 0.0 0.13 12.0 0.0 1.7 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_24 PF13578.1 gi|257386593|ref|YP_003176366.1| - 0.094 13.5 0.4 0.41 11.4 0.1 2.1 2 1 0 2 2 2 0 Methyltransferase domain Methyltransf_32 PF13679.1 gi|257386593|ref|YP_003176366.1| - 0.11 12.1 0.0 0.18 11.5 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain zinc_ribbon_5 PF13719.1 gi|257386594|ref|YP_003176367.1| - 0.0005 19.5 0.8 0.0011 18.4 0.5 1.5 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|257386594|ref|YP_003176367.1| - 0.0021 17.7 0.7 0.0045 16.6 0.5 1.6 1 0 0 1 1 1 1 zinc-ribbon domain DUF2387 PF09526.5 gi|257386594|ref|YP_003176367.1| - 0.0032 17.3 1.1 0.0064 16.3 0.8 1.5 1 0 0 1 1 1 1 Probable metal-binding protein (DUF2387) Lar_restr_allev PF14354.1 gi|257386594|ref|YP_003176367.1| - 0.016 15.5 0.7 0.016 15.5 0.5 1.8 2 0 0 2 2 2 0 Restriction alleviation protein Lar Y_Y_Y PF07495.8 gi|257386594|ref|YP_003176367.1| - 0.047 13.4 0.0 0.08 12.7 0.0 1.4 1 0 0 1 1 1 0 Y_Y_Y domain RNHCP PF12647.2 gi|257386594|ref|YP_003176367.1| - 0.059 13.1 0.2 0.11 12.2 0.1 1.5 1 0 0 1 1 1 0 RNHCP domain MT PF12777.2 gi|257386594|ref|YP_003176367.1| - 0.12 11.0 0.1 0.15 10.7 0.1 1.1 1 0 0 1 1 1 0 Microtubule-binding stalk of dynein motor Peptidase_M29 PF02073.10 gi|257386596|ref|YP_003176369.1| - 2.4e-19 69.3 0.1 5.1e-17 61.7 0.1 2.1 2 0 0 2 2 2 2 Thermophilic metalloprotease (M29) Gp_dh_N PF00044.19 gi|257386597|ref|YP_003176370.1| - 1.6e-17 63.8 0.0 2.9e-17 63.0 0.0 1.5 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Gp_dh_C PF02800.15 gi|257386597|ref|YP_003176370.1| - 1.1e-15 57.3 0.0 2.3e-15 56.3 0.0 1.5 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DapB_N PF01113.15 gi|257386597|ref|YP_003176370.1| - 3.1e-10 40.0 0.1 7.2e-10 38.8 0.0 1.6 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus NAD_binding_3 PF03447.11 gi|257386597|ref|YP_003176370.1| - 5.2e-05 23.6 0.3 0.00042 20.6 0.2 2.2 2 0 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|257386597|ref|YP_003176370.1| - 0.0028 16.8 0.1 0.011 14.9 0.1 2.0 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GFO_IDH_MocA PF01408.17 gi|257386597|ref|YP_003176370.1| - 0.0037 17.7 0.2 0.018 15.5 0.1 2.1 1 1 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold Saccharop_dh PF03435.13 gi|257386597|ref|YP_003176370.1| - 0.055 12.4 0.2 0.081 11.8 0.1 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase Semialdhyde_dh PF01118.19 gi|257386597|ref|YP_003176370.1| - 0.087 13.1 0.0 0.19 12.0 0.0 1.6 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain Metallophos_2 PF12850.2 gi|257386598|ref|YP_003176371.1| - 1.2e-29 103.1 0.6 1.4e-29 102.9 0.4 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|257386598|ref|YP_003176371.1| - 0.00046 19.6 8.2 0.034 13.5 5.7 2.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Glyco_tranf_2_4 PF13704.1 gi|257386598|ref|YP_003176371.1| - 0.019 15.2 0.0 0.031 14.5 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase family 2 Metallophos_3 PF14582.1 gi|257386598|ref|YP_003176371.1| - 0.11 11.6 0.3 4.2 6.4 0.0 2.1 1 1 1 2 2 2 0 Metallophosphoesterase, calcineurin superfamily CTX_RstB PF07459.6 gi|257386600|ref|YP_003176373.1| - 0.16 11.8 0.0 0.43 10.4 0.0 1.7 1 0 0 1 1 1 0 CTX phage RstB protein APH PF01636.18 gi|257386601|ref|YP_003176374.1| - 5.3e-22 78.7 6.9 8e-22 78.1 4.7 1.4 1 1 0 1 1 1 1 Phosphotransferase enzyme family Fructosamin_kin PF03881.9 gi|257386601|ref|YP_003176374.1| - 0.077 11.9 0.0 3.4 6.5 0.0 2.8 2 1 0 2 2 2 0 Fructosamine kinase PGK PF00162.14 gi|257386602|ref|YP_003176375.1| - 2.9e-108 361.8 0.1 3.5e-108 361.6 0.0 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase IBN_N PF03810.14 gi|257386603|ref|YP_003176376.1| - 0.12 12.3 0.3 1.4 8.8 0.0 2.2 2 0 0 2 2 2 0 Importin-beta N-terminal domain ABC_tran PF00005.22 gi|257386605|ref|YP_003176378.1| - 7e-31 107.3 0.0 1e-30 106.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|257386605|ref|YP_003176378.1| - 6e-18 64.9 0.2 1.2e-17 63.9 0.2 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|257386605|ref|YP_003176378.1| - 1.4e-07 31.8 0.0 8.9e-06 25.8 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|257386605|ref|YP_003176378.1| - 0.00014 21.9 0.0 0.0011 19.0 0.0 2.2 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|257386605|ref|YP_003176378.1| - 0.00023 21.1 0.2 0.00068 19.6 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain AAA PF00004.24 gi|257386605|ref|YP_003176378.1| - 0.0035 17.5 0.0 0.028 14.6 0.0 2.4 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) SMC_N PF02463.14 gi|257386605|ref|YP_003176378.1| - 0.0052 16.0 0.0 0.011 15.0 0.0 1.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain MobB PF03205.9 gi|257386605|ref|YP_003176378.1| - 0.022 14.4 0.0 0.042 13.5 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ATP-synt_ab PF00006.20 gi|257386605|ref|YP_003176378.1| - 0.033 13.6 0.0 0.051 13.0 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain Arch_ATPase PF01637.13 gi|257386605|ref|YP_003176378.1| - 0.033 13.8 0.1 0.068 12.8 0.0 1.5 2 0 0 2 2 2 0 Archaeal ATPase NACHT PF05729.7 gi|257386605|ref|YP_003176378.1| - 0.069 12.8 0.1 0.13 11.8 0.1 1.4 1 0 0 1 1 1 0 NACHT domain Sigma54_activat PF00158.21 gi|257386605|ref|YP_003176378.1| - 0.076 12.4 0.0 4.8 6.6 0.0 2.2 2 0 0 2 2 2 0 Sigma-54 interaction domain PRK PF00485.13 gi|257386605|ref|YP_003176378.1| - 0.077 12.5 0.0 0.13 11.8 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_18 PF13238.1 gi|257386605|ref|YP_003176378.1| - 0.1 12.9 0.0 0.3 11.3 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_5 PF07728.9 gi|257386605|ref|YP_003176378.1| - 0.12 12.0 0.1 0.49 10.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_29 PF13555.1 gi|257386605|ref|YP_003176378.1| - 0.13 11.8 0.0 0.24 10.9 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain RNA_helicase PF00910.17 gi|257386605|ref|YP_003176378.1| - 0.18 11.9 0.0 0.33 11.1 0.0 1.4 1 0 0 1 1 1 0 RNA helicase AAA_10 PF12846.2 gi|257386605|ref|YP_003176378.1| - 0.19 11.1 0.5 6.4 6.1 0.0 2.7 2 1 1 3 3 3 0 AAA-like domain NB-ARC PF00931.17 gi|257386605|ref|YP_003176378.1| - 0.21 10.4 0.0 0.33 9.7 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_13 PF13166.1 gi|257386605|ref|YP_003176378.1| - 0.4 9.0 0.2 13 4.1 0.1 2.0 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|257386606|ref|YP_003176379.1| - 1.7e-28 99.6 0.0 2.3e-28 99.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|257386606|ref|YP_003176379.1| - 2.7e-19 69.2 0.3 5.1e-19 68.3 0.2 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|257386606|ref|YP_003176379.1| - 4.7e-05 23.4 0.2 0.00019 21.5 0.0 1.8 1 1 0 2 2 2 1 AAA domain DUF2075 PF09848.4 gi|257386606|ref|YP_003176379.1| - 0.0021 17.1 0.0 0.003 16.5 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) AAA_22 PF13401.1 gi|257386606|ref|YP_003176379.1| - 0.0038 17.3 0.9 0.097 12.8 0.6 2.3 1 1 0 1 1 1 1 AAA domain ATP-synt_ab PF00006.20 gi|257386606|ref|YP_003176379.1| - 0.0081 15.6 0.0 0.012 15.0 0.0 1.3 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_25 PF13481.1 gi|257386606|ref|YP_003176379.1| - 0.041 13.2 0.1 0.21 10.9 0.1 2.0 1 1 0 1 1 1 0 AAA domain DUF87 PF01935.12 gi|257386606|ref|YP_003176379.1| - 0.045 13.5 0.4 0.12 12.2 0.3 1.9 1 1 0 1 1 1 0 Domain of unknown function DUF87 AAA_16 PF13191.1 gi|257386606|ref|YP_003176379.1| - 0.15 12.0 0.1 0.27 11.2 0.1 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_15 PF13175.1 gi|257386606|ref|YP_003176379.1| - 0.24 10.4 0.0 0.39 9.7 0.0 1.3 1 0 0 1 1 1 0 AAA ATPase domain BPD_transp_1 PF00528.17 gi|257386607|ref|YP_003176380.1| - 2.8e-30 105.2 11.2 1.3e-29 103.0 7.5 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|257386607|ref|YP_003176380.1| - 4.4e-10 38.7 0.0 4.4e-10 38.7 0.0 3.1 4 0 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.17 gi|257386608|ref|YP_003176381.1| - 5.9e-40 136.7 12.2 5.9e-40 136.7 8.5 1.6 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.17 gi|257386609|ref|YP_003176382.1| - 5.8e-60 203.0 0.2 9.6e-60 202.3 0.1 1.3 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle NRDE PF05742.7 gi|257386609|ref|YP_003176382.1| - 0.011 15.1 0.0 0.02 14.2 0.0 1.4 1 0 0 1 1 1 0 NRDE protein DUF1547 PF07577.6 gi|257386610|ref|YP_003176383.1| - 0.00024 20.6 0.5 0.0082 15.7 0.4 2.7 1 1 0 1 1 1 1 Domain of Unknown Function (DUF1547) TAT_signal PF10518.4 gi|257386610|ref|YP_003176383.1| - 0.0043 16.9 0.2 0.016 15.1 0.1 2.0 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Dyp_perox PF04261.7 gi|257386610|ref|YP_003176383.1| - 0.01 14.6 0.1 0.033 12.9 0.1 1.7 1 1 0 1 1 1 0 Dyp-type peroxidase family Iron_transport PF10634.4 gi|257386611|ref|YP_003176384.1| - 5.1e-07 29.6 0.1 5.9e-05 22.9 0.0 2.7 3 1 0 3 3 3 2 Fe2+ transport protein Big_3_4 PF13754.1 gi|257386611|ref|YP_003176384.1| - 6.1 7.2 7.0 3.7 7.9 0.1 3.0 3 0 0 3 3 3 0 Bacterial Ig-like domain (group 3) DUF4233 PF14017.1 gi|257386613|ref|YP_003176386.1| - 0.0085 16.0 1.2 0.0095 15.8 0.9 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF4233) ABC2_membrane_3 PF12698.2 gi|257386613|ref|YP_003176386.1| - 0.48 9.4 4.1 0.54 9.2 2.8 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein MMR_HSR1 PF01926.18 gi|257386614|ref|YP_003176387.1| - 3.5e-19 68.8 0.0 6.4e-19 68.0 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase NOG1 PF06858.9 gi|257386614|ref|YP_003176387.1| - 6.5e-17 61.1 0.0 1.2e-16 60.2 0.0 1.5 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) FeoB_N PF02421.13 gi|257386614|ref|YP_003176387.1| - 6.8e-11 41.6 0.0 1e-10 41.0 0.0 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B Miro PF08477.8 gi|257386614|ref|YP_003176387.1| - 0.0003 21.2 0.0 0.00052 20.5 0.0 1.4 1 0 0 1 1 1 1 Miro-like protein Dynamin_N PF00350.18 gi|257386614|ref|YP_003176387.1| - 0.0012 18.7 0.1 1.3 8.7 0.0 2.5 1 1 1 2 2 2 2 Dynamin family AIG1 PF04548.11 gi|257386614|ref|YP_003176387.1| - 0.0019 17.3 0.0 0.0028 16.7 0.0 1.4 1 0 0 1 1 1 1 AIG1 family DUF258 PF03193.11 gi|257386614|ref|YP_003176387.1| - 0.014 14.5 0.0 0.05 12.7 0.0 1.9 1 1 0 1 1 1 0 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|257386614|ref|YP_003176387.1| - 0.019 14.9 0.0 0.082 12.8 0.0 2.0 1 1 1 2 2 2 0 AAA ATPase domain Ras PF00071.17 gi|257386614|ref|YP_003176387.1| - 0.037 13.4 0.0 0.12 11.7 0.0 1.9 1 1 0 1 1 1 0 Ras family HTH_20 PF12840.2 gi|257386615|ref|YP_003176388.1| - 0.43 10.4 7.5 0.15 11.9 2.8 2.0 2 1 0 2 2 2 0 Helix-turn-helix domain ASCH PF04266.9 gi|257386616|ref|YP_003176389.1| - 0.0016 18.8 0.1 0.0022 18.3 0.1 1.4 1 1 0 1 1 1 1 ASCH domain Tox-REase-9 PF15650.1 gi|257386616|ref|YP_003176389.1| - 0.025 14.7 0.0 0.034 14.3 0.0 1.2 1 0 0 1 1 1 0 Restriction endonuclease fold toxin 9 Herpes_US12 PF05363.7 gi|257386616|ref|YP_003176389.1| - 0.21 12.1 1.2 0.56 10.7 0.4 1.8 1 1 1 2 2 2 0 Herpesvirus US12 family PRA-PH PF01503.12 gi|257386617|ref|YP_003176390.1| - 5.8e-15 55.3 2.5 7.1e-15 55.0 1.7 1.1 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG PF03819.12 gi|257386617|ref|YP_003176390.1| - 0.0016 18.3 3.1 0.0016 18.3 2.2 1.6 2 0 0 2 2 2 1 MazG nucleotide pyrophosphohydrolase domain SLS PF14611.1 gi|257386617|ref|YP_003176390.1| - 0.024 14.0 0.1 0.026 13.9 0.0 1.1 1 0 0 1 1 1 0 Mitochondrial inner-membrane-bound regulator AA_permease_C PF13906.1 gi|257386618|ref|YP_003176391.1| - 0.067 13.0 2.9 0.086 12.7 2.0 1.2 1 0 0 1 1 1 0 C-terminus of AA_permease SNO PF01174.14 gi|257386619|ref|YP_003176392.1| - 1.2e-55 188.0 0.0 1.3e-55 187.9 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.9 gi|257386619|ref|YP_003176392.1| - 9.6e-09 35.0 0.0 4.9e-08 32.7 0.0 2.0 2 1 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.23 gi|257386619|ref|YP_003176392.1| - 0.00017 21.0 0.0 0.00055 19.4 0.0 1.7 1 1 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_S51 PF03575.12 gi|257386619|ref|YP_003176392.1| - 0.00022 20.9 0.0 0.00031 20.5 0.0 1.2 1 0 0 1 1 1 1 Peptidase family S51 DJ-1_PfpI PF01965.19 gi|257386619|ref|YP_003176392.1| - 0.007 15.8 0.1 0.033 13.6 0.0 1.9 2 0 0 2 2 2 1 DJ-1/PfpI family PrsW-protease PF13367.1 gi|257386620|ref|YP_003176393.1| - 7.4e-39 132.9 16.5 7.4e-39 132.9 11.4 1.6 2 0 0 2 2 2 1 Protease prsW family Lum_binding PF00677.12 gi|257386621|ref|YP_003176394.1| - 3e-35 119.9 0.0 1.8e-18 66.1 0.0 2.0 2 0 0 2 2 2 2 Lumazine binding domain DUF3309 PF11752.3 gi|257386623|ref|YP_003176396.1| - 0.0041 16.8 0.2 0.0041 16.8 0.1 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF3309) DUF2834 PF11196.3 gi|257386623|ref|YP_003176396.1| - 0.012 15.6 0.4 0.013 15.5 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2834) FixQ PF05545.6 gi|257386623|ref|YP_003176396.1| - 0.021 14.4 0.1 0.021 14.4 0.1 2.0 2 0 0 2 2 2 0 Cbb3-type cytochrome oxidase component FixQ 5TM-5TMR_LYT PF07694.7 gi|257386623|ref|YP_003176396.1| - 0.024 13.9 2.5 0.024 13.9 1.8 1.0 1 0 0 1 1 1 0 5TMR of 5TMR-LYT TauE PF01925.14 gi|257386623|ref|YP_003176396.1| - 0.025 14.0 1.3 0.029 13.8 0.9 1.1 1 0 0 1 1 1 0 Sulfite exporter TauE/SafE DUF4131 PF13567.1 gi|257386623|ref|YP_003176396.1| - 0.23 10.8 1.1 0.25 10.7 0.8 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) PspC PF04024.7 gi|257386623|ref|YP_003176396.1| - 2.8 7.4 8.4 0.2 11.1 1.0 2.0 2 0 0 2 2 2 0 PspC domain Tetraspannin PF00335.15 gi|257386623|ref|YP_003176396.1| - 2.9 7.1 4.5 3.2 6.9 3.1 1.0 1 0 0 1 1 1 0 Tetraspanin family FtsX PF02687.16 gi|257386623|ref|YP_003176396.1| - 4.3 7.1 7.0 9.3 6.0 4.8 1.5 1 1 0 1 1 1 0 FtsX-like permease family UvrD-helicase PF00580.16 gi|257386624|ref|YP_003176397.1| - 2.4e-26 92.7 0.0 1.7e-12 47.2 0.0 2.3 2 0 0 2 2 2 2 UvrD/REP helicase N-terminal domain UvrD_C PF13361.1 gi|257386624|ref|YP_003176397.1| - 1.1e-12 48.0 0.0 4.6e-09 36.2 0.0 2.4 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain AAA_19 PF13245.1 gi|257386624|ref|YP_003176397.1| - 5.2e-12 45.3 0.1 2.6e-11 43.1 0.0 2.1 2 0 0 2 2 2 1 Part of AAA domain UvrD_C_2 PF13538.1 gi|257386624|ref|YP_003176397.1| - 1.5e-07 31.4 0.6 6e-06 26.3 0.4 2.7 1 1 0 1 1 1 1 UvrD-like helicase C-terminal domain Viral_helicase1 PF01443.13 gi|257386624|ref|YP_003176397.1| - 2.7e-05 23.8 0.0 1.4 8.3 0.0 3.9 4 0 0 4 4 4 2 Viral (Superfamily 1) RNA helicase AAA_30 PF13604.1 gi|257386624|ref|YP_003176397.1| - 0.00014 21.5 0.1 0.031 13.8 0.0 3.5 4 0 0 4 4 4 1 AAA domain AAA_11 PF13086.1 gi|257386624|ref|YP_003176397.1| - 0.00051 19.6 0.0 0.0013 18.3 0.0 1.7 2 0 0 2 2 2 1 AAA domain Herpes_ori_bp PF02399.10 gi|257386624|ref|YP_003176397.1| - 0.00078 17.5 0.0 0.0011 17.0 0.0 1.1 1 0 0 1 1 1 1 Origin of replication binding protein AAA_22 PF13401.1 gi|257386624|ref|YP_003176397.1| - 0.00089 19.4 0.0 0.35 11.0 0.0 2.7 2 0 0 2 2 2 1 AAA domain DEAD PF00270.24 gi|257386624|ref|YP_003176397.1| - 0.0015 18.0 0.8 1.5 8.3 0.0 2.8 3 0 0 3 3 3 2 DEAD/DEAH box helicase DUF2075 PF09848.4 gi|257386624|ref|YP_003176397.1| - 0.012 14.6 0.0 0.48 9.3 0.0 2.8 3 0 0 3 3 3 0 Uncharacterized conserved protein (DUF2075) AAA_25 PF13481.1 gi|257386624|ref|YP_003176397.1| - 0.012 15.0 0.5 2.4 7.5 0.0 3.3 3 1 0 3 3 3 0 AAA domain AAA_14 PF13173.1 gi|257386624|ref|YP_003176397.1| - 0.032 14.1 0.0 8.4 6.3 0.0 2.5 2 0 0 2 2 2 0 AAA domain DUF3243 PF11588.3 gi|257386624|ref|YP_003176397.1| - 0.13 12.2 0.3 0.45 10.5 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3243) PhnA_Zn_Ribbon PF08274.7 gi|257386625|ref|YP_003176398.1| - 0.0012 18.6 0.1 0.0023 17.6 0.0 1.5 1 1 0 1 1 1 1 PhnA Zinc-Ribbon DZR PF12773.2 gi|257386625|ref|YP_003176398.1| - 0.0018 18.0 0.3 0.0022 17.7 0.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|257386625|ref|YP_003176398.1| - 0.0028 16.8 0.5 0.19 10.9 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon domain Nudix_N_2 PF14803.1 gi|257386625|ref|YP_003176398.1| - 0.014 15.0 3.5 0.091 12.4 2.4 2.0 1 1 0 1 1 1 0 Nudix N-terminal UPF0547 PF10571.4 gi|257386625|ref|YP_003176398.1| - 0.019 14.6 0.6 1 9.0 0.1 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 FYVE PF01363.16 gi|257386625|ref|YP_003176398.1| - 0.032 14.1 0.2 0.05 13.5 0.1 1.3 1 0 0 1 1 1 0 FYVE zinc finger A2L_zn_ribbon PF08792.5 gi|257386625|ref|YP_003176398.1| - 0.077 12.4 2.4 2.8 7.4 0.1 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-IS66 PF13005.2 gi|257386625|ref|YP_003176398.1| - 0.085 12.8 1.3 0.93 9.5 0.2 2.1 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 zinc_ribbon_6 PF14599.1 gi|257386625|ref|YP_003176398.1| - 0.23 11.2 1.8 1.1 9.0 0.1 2.0 2 0 0 2 2 2 0 Zinc-ribbon zf-RING_3 PF14369.1 gi|257386625|ref|YP_003176398.1| - 0.25 11.3 0.4 0.25 11.3 0.3 2.1 2 0 0 2 2 2 0 zinc-finger Zn-ribbon_8 PF09723.5 gi|257386625|ref|YP_003176398.1| - 0.31 11.0 6.3 4 7.4 4.2 2.1 1 1 0 1 1 1 0 Zinc ribbon domain zf-HYPF PF07503.7 gi|257386625|ref|YP_003176398.1| - 0.36 10.2 3.3 2.2 7.7 0.2 2.2 2 0 0 2 2 2 0 HypF finger DUF4182 PF13790.1 gi|257386625|ref|YP_003176398.1| - 0.37 10.6 2.4 7.6 6.4 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4182) TF_Zn_Ribbon PF08271.7 gi|257386625|ref|YP_003176398.1| - 0.65 9.3 5.6 2.9 7.2 3.9 1.9 1 1 0 1 1 1 0 TFIIB zinc-binding Prok-RING_1 PF14446.1 gi|257386625|ref|YP_003176398.1| - 1.5 8.5 4.0 10 5.9 0.3 2.1 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 DUF3039 PF11238.3 gi|257386625|ref|YP_003176398.1| - 1.7 8.1 4.3 0.47 9.9 0.3 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3039) CbiM PF01891.11 gi|257386626|ref|YP_003176399.1| - 0.048 13.2 2.6 0.06 12.9 1.8 1.2 1 0 0 1 1 1 0 Cobalt uptake substrate-specific transmembrane region Cyto_ox_2 PF02322.10 gi|257386626|ref|YP_003176399.1| - 0.19 10.8 4.4 0.23 10.5 3.0 1.2 1 0 0 1 1 1 0 Cytochrome oxidase subunit II DsbD PF02683.10 gi|257386626|ref|YP_003176399.1| - 0.3 10.6 5.7 0.65 9.5 0.3 2.1 1 1 0 2 2 2 0 Cytochrome C biogenesis protein transmembrane region DUF3353 PF11833.3 gi|257386626|ref|YP_003176399.1| - 0.32 10.4 3.5 0.39 10.1 2.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3353) DUF202 PF02656.10 gi|257386626|ref|YP_003176399.1| - 3.1 8.0 5.2 7.7 6.8 3.6 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF202) HTH_20 PF12840.2 gi|257386627|ref|YP_003176400.1| - 3.5e-09 36.3 0.3 4.8e-09 35.8 0.2 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|257386627|ref|YP_003176400.1| - 3.5e-07 29.5 0.0 5.7e-07 28.8 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|257386627|ref|YP_003176400.1| - 4.5e-06 26.1 0.1 6.5e-06 25.6 0.1 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|257386627|ref|YP_003176400.1| - 0.00018 21.1 0.1 0.00026 20.5 0.1 1.2 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|257386627|ref|YP_003176400.1| - 0.00032 20.2 0.0 0.00046 19.7 0.0 1.4 1 0 0 1 1 1 1 HTH domain FUR PF01475.14 gi|257386627|ref|YP_003176400.1| - 0.00065 19.6 0.1 0.00079 19.3 0.1 1.3 1 0 0 1 1 1 1 Ferric uptake regulator family TFIIE_alpha PF02002.12 gi|257386627|ref|YP_003176400.1| - 0.00073 19.0 0.3 0.00089 18.7 0.2 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_5 PF01022.15 gi|257386627|ref|YP_003176400.1| - 0.0014 18.2 0.0 0.0025 17.4 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_AsnC-type PF13404.1 gi|257386627|ref|YP_003176400.1| - 0.0017 17.8 0.1 0.0027 17.2 0.1 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|257386627|ref|YP_003176400.1| - 0.0023 17.3 0.1 0.0048 16.3 0.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 TrmB PF01978.14 gi|257386627|ref|YP_003176400.1| - 0.0044 16.6 0.1 0.008 15.8 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB ArsR PF09824.4 gi|257386627|ref|YP_003176400.1| - 0.0083 15.4 0.0 0.0088 15.3 0.0 1.1 1 0 0 1 1 1 1 ArsR transcriptional regulator HTH_23 PF13384.1 gi|257386627|ref|YP_003176400.1| - 0.03 13.9 0.0 0.053 13.1 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain HTH_28 PF13518.1 gi|257386627|ref|YP_003176400.1| - 0.037 14.0 0.0 0.067 13.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r3 PF04539.11 gi|257386627|ref|YP_003176400.1| - 0.05 13.5 0.1 0.081 12.8 0.1 1.5 1 1 0 1 1 1 0 Sigma-70 region 3 Mga PF05043.8 gi|257386627|ref|YP_003176400.1| - 0.051 13.8 0.1 0.13 12.6 0.0 1.7 2 0 0 2 2 2 0 Mga helix-turn-helix domain HTH_27 PF13463.1 gi|257386627|ref|YP_003176400.1| - 0.1 12.9 0.1 0.16 12.2 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain PadR PF03551.9 gi|257386628|ref|YP_003176401.1| - 6.3e-09 35.4 0.0 1.1e-08 34.6 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family FUR PF01475.14 gi|257386628|ref|YP_003176401.1| - 0.021 14.7 0.0 0.03 14.2 0.0 1.2 1 0 0 1 1 1 0 Ferric uptake regulator family DZR PF12773.2 gi|257386629|ref|YP_003176402.1| - 0.026 14.3 0.5 0.029 14.1 0.3 1.2 1 0 0 1 1 1 0 Double zinc ribbon OrfB_Zn_ribbon PF07282.6 gi|257386629|ref|YP_003176402.1| - 0.029 14.0 1.1 0.076 12.6 0.8 1.6 1 1 0 1 1 1 0 Putative transposase DNA-binding domain Rubredoxin PF00301.15 gi|257386629|ref|YP_003176402.1| - 0.093 12.6 1.0 9.8 6.1 0.0 2.2 2 0 0 2 2 2 0 Rubredoxin UPF0547 PF10571.4 gi|257386629|ref|YP_003176402.1| - 0.13 12.0 4.2 0.9 9.2 2.9 2.0 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 zinc_ribbon_2 PF13240.1 gi|257386629|ref|YP_003176402.1| - 0.46 10.0 4.0 0.78 9.3 2.7 1.4 1 0 0 1 1 1 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|257386629|ref|YP_003176402.1| - 0.53 9.5 4.3 0.87 8.8 3.0 1.4 1 0 0 1 1 1 0 zinc-ribbon domain zf-IS66 PF13005.2 gi|257386629|ref|YP_003176402.1| - 1.2 9.1 4.1 1.7 8.6 0.5 2.1 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 Zn-ribbon_8 PF09723.5 gi|257386629|ref|YP_003176402.1| - 2.5 8.1 5.6 2.2 8.2 0.6 2.1 1 1 1 2 2 2 0 Zinc ribbon domain zf-NADH-PPase PF09297.6 gi|257386629|ref|YP_003176402.1| - 4.7 6.7 6.4 2.6 7.6 0.4 2.4 1 1 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain tRNA_NucTransf2 PF09249.6 gi|257386630|ref|YP_003176403.1| - 1.7e-40 137.4 0.0 2.6e-40 136.8 0.0 1.3 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.18 gi|257386630|ref|YP_003176403.1| - 6.7e-12 45.5 0.0 1.6e-11 44.3 0.0 1.6 1 0 0 1 1 1 1 Nucleotidyltransferase domain Hist_deacetyl PF00850.14 gi|257386631|ref|YP_003176404.1| - 8.6e-78 261.7 0.0 1e-77 261.5 0.0 1.0 1 0 0 1 1 1 1 Histone deacetylase domain CBFD_NFYB_HMF PF00808.18 gi|257386632|ref|YP_003176405.1| - 2.3e-27 94.8 0.2 1.2e-14 54.0 0.1 2.0 2 0 0 2 2 2 2 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.19 gi|257386632|ref|YP_003176405.1| - 1.5e-18 66.6 0.5 2.8e-09 36.9 0.2 2.0 2 0 0 2 2 2 2 Core histone H2A/H2B/H3/H4 TFIID-18kDa PF02269.11 gi|257386632|ref|YP_003176405.1| - 0.00017 21.2 0.2 0.16 11.7 0.0 2.1 2 0 0 2 2 2 2 Transcription initiation factor IID, 18kD subunit CENP-S PF15630.1 gi|257386632|ref|YP_003176405.1| - 0.00094 19.3 1.3 0.0024 18.0 0.4 1.8 2 0 0 2 2 2 1 Kinetochore component CENP-S TFIID_20kDa PF03847.8 gi|257386632|ref|YP_003176405.1| - 0.003 17.7 0.2 0.0049 17.1 0.1 1.4 1 0 0 1 1 1 1 Transcription initiation factor TFIID subunit A DUF1931 PF09123.6 gi|257386632|ref|YP_003176405.1| - 0.013 15.4 1.7 0.25 11.2 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1931) Bromo_TP PF07524.8 gi|257386632|ref|YP_003176405.1| - 0.029 14.1 0.5 3.7 7.3 0.1 2.1 2 0 0 2 2 2 0 Bromodomain associated TAF PF02969.12 gi|257386632|ref|YP_003176405.1| - 0.034 14.0 1.8 7.6 6.5 0.0 2.3 2 1 0 2 2 2 0 TATA box binding protein associated factor (TAF) Metal_resist PF13801.1 gi|257386632|ref|YP_003176405.1| - 8.3 6.4 14.0 4 7.4 1.4 2.1 2 0 0 2 2 2 0 Heavy-metal resistance tRNA_anti-codon PF01336.20 gi|257386633|ref|YP_003176406.1| - 2.3e-31 107.4 6.9 6.1e-13 48.4 0.2 4.2 4 1 1 5 5 5 3 OB-fold nucleic acid binding domain Rep_fac-A_C PF08646.5 gi|257386633|ref|YP_003176406.1| - 0.00045 19.9 0.0 7.1 6.3 0.0 3.4 3 0 0 3 3 3 3 Replication factor-A C terminal domain NfeD PF01957.13 gi|257386633|ref|YP_003176406.1| - 4.7 7.3 5.0 8.8 6.4 0.1 2.8 3 0 0 3 3 3 0 NfeD-like C-terminal, partner-binding PhyH PF05721.8 gi|257386635|ref|YP_003176408.1| - 1.5e-40 139.5 0.1 1.7e-40 139.2 0.1 1.1 1 0 0 1 1 1 1 Phytanoyl-CoA dioxygenase (PhyH) DUF1479 PF07350.7 gi|257386635|ref|YP_003176408.1| - 0.045 12.2 0.3 1.8 6.9 0.0 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF1479) DUF309 PF03745.9 gi|257386636|ref|YP_003176409.1| - 9.9e-16 56.9 0.2 1.7e-15 56.1 0.2 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF309) OrfB_Zn_ribbon PF07282.6 gi|257386637|ref|YP_003176410.1| - 9.7e-20 70.0 0.9 1.7e-19 69.2 0.6 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|257386637|ref|YP_003176410.1| - 9.6e-05 21.8 0.4 0.00019 20.8 0.3 1.6 1 1 0 1 1 1 1 Probable transposase Zn_Tnp_IS1595 PF12760.2 gi|257386637|ref|YP_003176410.1| - 0.00045 19.9 4.9 0.00087 19.0 3.4 1.4 1 0 0 1 1 1 1 Transposase zinc-ribbon domain XisH PF08814.5 gi|257386637|ref|YP_003176410.1| - 0.05 13.6 0.2 0.11 12.4 0.1 1.7 2 0 0 2 2 2 0 XisH protein DUF2080 PF09853.4 gi|257386638|ref|YP_003176411.1| - 0.00054 19.6 0.0 0.00071 19.2 0.0 1.1 1 0 0 1 1 1 1 Putative transposon-encoded protein (DUF2080) Y1_Tnp PF01797.11 gi|257386639|ref|YP_003176412.1| - 1.1e-33 115.6 0.1 2.2e-30 104.9 0.0 2.0 2 0 0 2 2 2 2 Transposase IS200 like PRC PF05239.11 gi|257386640|ref|YP_003176413.1| - 0.028 14.2 0.3 0.054 13.3 0.2 1.5 1 1 0 1 1 1 0 PRC-barrel domain Epimerase PF01370.16 gi|257386642|ref|YP_003176415.1| - 8.5e-21 74.4 0.0 9.9e-21 74.2 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|257386642|ref|YP_003176415.1| - 2.6e-14 52.5 0.0 4.5e-14 51.8 0.0 1.4 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.1 gi|257386642|ref|YP_003176415.1| - 2.4e-12 47.2 0.0 3.2e-12 46.8 0.0 1.3 1 1 0 1 1 1 1 NADH(P)-binding NAD_binding_4 PF07993.7 gi|257386642|ref|YP_003176415.1| - 1.1e-11 44.1 0.0 3.3e-11 42.5 0.0 1.6 2 0 0 2 2 2 1 Male sterility protein Polysacc_synt_2 PF02719.10 gi|257386642|ref|YP_003176415.1| - 1e-10 41.0 1.2 3.4e-07 29.4 0.0 3.0 2 1 1 3 3 3 2 Polysaccharide biosynthesis protein adh_short PF00106.20 gi|257386642|ref|YP_003176415.1| - 0.0013 18.6 2.7 0.013 15.4 1.9 2.1 1 1 0 1 1 1 1 short chain dehydrogenase NmrA PF05368.8 gi|257386642|ref|YP_003176415.1| - 0.0044 16.2 0.0 0.0044 16.2 0.0 1.4 2 0 0 2 2 2 1 NmrA-like family RmlD_sub_bind PF04321.12 gi|257386642|ref|YP_003176415.1| - 0.005 15.7 0.0 0.01 14.7 0.0 1.4 1 1 0 1 1 1 1 RmlD substrate binding domain KR PF08659.5 gi|257386642|ref|YP_003176415.1| - 0.0092 15.6 0.4 0.1 12.2 0.3 2.4 1 1 0 1 1 1 1 KR domain DUF372 PF04036.7 gi|257386643|ref|YP_003176416.1| - 6.4e-19 67.1 0.2 1e-18 66.4 0.2 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF372) DUF381 PF04038.7 gi|257386643|ref|YP_003176416.1| - 5.9e-18 64.6 0.5 7.6e-18 64.3 0.4 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF381) GPW_gp25 PF04965.9 gi|257386643|ref|YP_003176416.1| - 0.0032 16.9 0.0 0.0044 16.5 0.0 1.4 1 1 0 1 1 1 1 Gene 25-like lysozyme EcoEI_R_C PF08463.5 gi|257386645|ref|YP_003176418.1| - 0.068 13.0 2.8 0.84 9.4 0.7 2.0 1 1 1 2 2 2 0 EcoEI R protein C-terminal EAP30 PF04157.11 gi|257386645|ref|YP_003176418.1| - 0.097 11.8 0.3 0.26 10.3 0.1 1.7 1 1 1 2 2 2 0 EAP30/Vps36 family FlaC_arch PF05377.6 gi|257386645|ref|YP_003176418.1| - 0.13 12.1 0.2 0.89 9.5 0.0 2.2 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) DUF4398 PF14346.1 gi|257386645|ref|YP_003176418.1| - 7.5 6.6 16.1 0.083 12.9 3.4 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4398) Creatininase PF02633.9 gi|257386646|ref|YP_003176419.1| - 4.1e-71 238.8 2.7 4.6e-71 238.6 1.9 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase PQQ_2 PF13360.1 gi|257386648|ref|YP_003176421.1| - 1.2e-32 113.3 20.3 1.3e-15 57.5 3.2 3.3 1 1 2 3 3 3 3 PQQ-like domain PQQ_3 PF13570.1 gi|257386648|ref|YP_003176421.1| - 4.6e-18 64.8 33.0 0.00096 19.3 0.1 7.8 8 0 0 8 8 8 7 PQQ-like domain PQQ PF01011.16 gi|257386648|ref|YP_003176421.1| - 3.5e-10 38.8 12.7 0.21 11.1 0.0 7.4 6 2 1 7 7 7 4 PQQ enzyme repeat PALP PF00291.20 gi|257386649|ref|YP_003176422.1| - 1.1e-38 133.2 0.3 1.3e-38 132.9 0.2 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Acetyltransf_1 PF00583.19 gi|257386650|ref|YP_003176423.1| - 1.4e-12 47.4 0.1 2.5e-12 46.6 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family FR47 PF08445.5 gi|257386650|ref|YP_003176423.1| - 1.2e-05 24.9 0.0 2e-05 24.2 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.1 gi|257386650|ref|YP_003176423.1| - 2.2e-05 24.4 0.0 0.00012 22.1 0.0 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|257386650|ref|YP_003176423.1| - 4.8e-05 23.5 0.0 5.9e-05 23.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|257386650|ref|YP_003176423.1| - 5.8e-05 23.1 0.0 8.8e-05 22.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|257386650|ref|YP_003176423.1| - 0.00013 22.0 0.0 0.00018 21.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|257386650|ref|YP_003176423.1| - 0.0012 18.7 0.1 0.0014 18.5 0.1 1.2 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|257386650|ref|YP_003176423.1| - 0.11 12.3 0.3 0.13 12.1 0.2 1.3 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain ADH_zinc_N PF00107.21 gi|257386651|ref|YP_003176424.1| - 4.5e-17 61.8 0.2 7.8e-17 61.0 0.1 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.1 gi|257386651|ref|YP_003176424.1| - 6.6e-09 36.7 0.1 1.3e-08 35.8 0.0 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase TACC PF05010.9 gi|257386652|ref|YP_003176425.1| - 0.097 12.4 4.7 0.18 11.5 2.3 2.0 1 1 0 1 1 1 0 Transforming acidic coiled-coil-containing protein (TACC) PIN_3 PF13470.1 gi|257386653|ref|YP_003176426.1| - 0.044 14.4 0.0 0.082 13.5 0.0 1.7 1 1 0 1 1 1 0 PIN domain MS_channel PF00924.13 gi|257386654|ref|YP_003176427.1| - 5.3e-19 68.3 1.4 8.8e-19 67.6 1.0 1.3 1 0 0 1 1 1 1 Mechanosensitive ion channel TM_helix PF05552.7 gi|257386654|ref|YP_003176427.1| - 0.0031 17.1 0.5 0.0031 17.1 0.4 2.0 2 0 0 2 2 2 1 Conserved TM helix Cytochrom_B_C PF00032.12 gi|257386654|ref|YP_003176427.1| - 0.095 12.9 0.8 0.14 12.4 0.6 1.3 1 0 0 1 1 1 0 Cytochrome b(C-terminal)/b6/petD LHC PF00556.15 gi|257386654|ref|YP_003176427.1| - 0.32 10.8 0.2 0.32 10.8 0.1 2.0 2 0 0 2 2 2 0 Antenna complex alpha/beta subunit Metal_resist PF13801.1 gi|257386655|ref|YP_003176428.1| - 2.8 7.9 11.4 0.39 10.7 2.4 2.7 3 0 0 3 3 3 0 Heavy-metal resistance PTPS PF01242.14 gi|257386656|ref|YP_003176429.1| - 4.8e-23 81.1 0.0 5.8e-23 80.9 0.0 1.1 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase Radical_SAM PF04055.16 gi|257386657|ref|YP_003176430.1| - 1.1e-24 87.5 1.0 1.1e-23 84.2 0.7 2.1 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|257386657|ref|YP_003176430.1| - 5.8e-18 65.0 0.0 1.3e-17 63.8 0.0 1.5 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|257386657|ref|YP_003176430.1| - 1.3e-11 44.7 0.0 2.4e-11 43.8 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain TP_methylase PF00590.15 gi|257386657|ref|YP_003176430.1| - 0.09 12.4 0.3 0.47 10.1 0.2 1.9 1 1 0 1 1 1 0 Tetrapyrrole (Corrin/Porphyrin) Methylases PLU-1 PF08429.6 gi|257386657|ref|YP_003176430.1| - 0.11 11.3 0.0 0.15 10.8 0.0 1.1 1 0 0 1 1 1 0 PLU-1-like protein GTP_cyclohydroI PF01227.17 gi|257386658|ref|YP_003176431.1| - 2.8e-49 166.8 0.0 3.4e-49 166.5 0.0 1.0 1 0 0 1 1 1 1 GTP cyclohydrolase I QueF PF14489.1 gi|257386658|ref|YP_003176431.1| - 0.0019 18.1 0.0 0.0033 17.3 0.0 1.4 1 0 0 1 1 1 1 QueF-like protein QueC PF06508.8 gi|257386659|ref|YP_003176432.1| - 3.1e-67 225.9 0.0 3.6e-67 225.6 0.0 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ThiI PF02568.9 gi|257386659|ref|YP_003176432.1| - 2e-05 24.1 0.0 6e-05 22.5 0.0 1.8 2 1 0 2 2 2 1 Thiamine biosynthesis protein (ThiI) tRNA_Me_trans PF03054.11 gi|257386659|ref|YP_003176432.1| - 0.0068 15.0 0.0 0.0092 14.5 0.0 1.2 1 0 0 1 1 1 1 tRNA methyl transferase Phasin_2 PF09361.5 gi|257386659|ref|YP_003176432.1| - 0.063 13.3 0.1 0.12 12.4 0.1 1.4 1 0 0 1 1 1 0 Phasin protein Asn_synthase PF00733.16 gi|257386659|ref|YP_003176432.1| - 0.074 12.5 0.4 0.12 11.8 0.3 1.3 1 0 0 1 1 1 0 Asparagine synthase MGS PF02142.17 gi|257386660|ref|YP_003176433.1| - 1.2e-15 57.1 0.0 1.6e-15 56.8 0.0 1.1 1 0 0 1 1 1 1 MGS-like domain dUTPase PF00692.14 gi|257386662|ref|YP_003176435.1| - 6.3e-10 38.6 0.0 9.3e-10 38.0 0.0 1.2 1 0 0 1 1 1 1 dUTPase DCD PF06559.6 gi|257386662|ref|YP_003176435.1| - 0.045 12.1 0.0 0.054 11.8 0.0 1.1 1 0 0 1 1 1 0 2'-deoxycytidine 5'-triphosphate deaminase (DCD) Aconitase PF00330.15 gi|257386663|ref|YP_003176436.1| - 2.5e-101 339.4 0.3 2.9e-70 237.0 0.0 2.1 1 1 1 2 2 2 2 Aconitase family (aconitate hydratase) Aconitase_C PF00694.14 gi|257386663|ref|YP_003176436.1| - 1.6e-21 76.8 0.0 2.9e-21 75.9 0.0 1.4 1 0 0 1 1 1 1 Aconitase C-terminal domain Barwin PF00967.12 gi|257386663|ref|YP_003176436.1| - 0.15 11.7 0.0 0.31 10.7 0.0 1.5 1 0 0 1 1 1 0 Barwin family SCP2_2 PF13530.1 gi|257386664|ref|YP_003176437.1| - 6.6e-38 130.2 3.9 9.1e-38 129.8 2.7 1.2 1 0 0 1 1 1 1 Sterol carrier protein domain Acetyltransf_9 PF13527.1 gi|257386664|ref|YP_003176437.1| - 1.8e-18 66.6 0.1 1.5e-17 63.6 0.0 2.1 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|257386664|ref|YP_003176437.1| - 2.1e-10 40.6 0.0 2.5e-07 30.7 0.0 2.3 2 0 0 2 2 2 2 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|257386664|ref|YP_003176437.1| - 5.8e-10 39.0 0.4 3.3e-06 27.0 0.1 2.5 2 0 0 2 2 2 2 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|257386664|ref|YP_003176437.1| - 3.1e-06 27.2 0.7 0.0031 17.6 0.0 2.4 2 0 0 2 2 2 2 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|257386664|ref|YP_003176437.1| - 0.0031 17.3 0.1 0.017 14.9 0.0 2.2 2 1 0 2 2 2 1 GCN5-related N-acetyl-transferase FR47 PF08445.5 gi|257386664|ref|YP_003176437.1| - 0.017 14.8 0.0 0.039 13.7 0.0 1.5 1 0 0 1 1 1 0 FR47-like protein Acetyltransf_1 PF00583.19 gi|257386665|ref|YP_003176438.1| - 1.5e-18 66.5 0.0 2.2e-18 66.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|257386665|ref|YP_003176438.1| - 2.3e-10 40.5 0.0 3e-10 40.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|257386665|ref|YP_003176438.1| - 2.6e-09 37.1 0.0 3.5e-09 36.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|257386665|ref|YP_003176438.1| - 2.6e-08 33.8 0.0 4.6e-08 33.0 0.0 1.5 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|257386665|ref|YP_003176438.1| - 7.8e-08 32.2 0.0 1.4e-07 31.4 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|257386665|ref|YP_003176438.1| - 1.5e-06 27.8 0.0 2.3e-06 27.2 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_CG PF14542.1 gi|257386665|ref|YP_003176438.1| - 0.00052 19.8 0.0 0.00083 19.1 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_3 PF13302.1 gi|257386665|ref|YP_003176438.1| - 0.0011 19.1 0.0 0.0022 18.1 0.0 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|257386665|ref|YP_003176438.1| - 0.0035 17.2 0.0 0.0055 16.6 0.0 1.4 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain DUF3749 PF12568.3 gi|257386665|ref|YP_003176438.1| - 0.12 11.9 0.1 0.15 11.6 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain NHase_alpha PF02979.11 gi|257386667|ref|YP_003176440.1| - 0.58 9.3 2.9 1.5 8.0 0.6 1.9 1 1 1 2 2 2 0 Nitrile hydratase, alpha chain TYA PF01021.14 gi|257386668|ref|YP_003176441.1| - 0.063 13.4 0.1 0.094 12.9 0.1 1.2 1 0 0 1 1 1 0 TYA transposon protein NUDIX PF00293.23 gi|257386669|ref|YP_003176442.1| - 1.7e-13 50.3 0.7 2.5e-13 49.8 0.4 1.4 1 1 0 1 1 1 1 NUDIX domain NUDIX PF00293.23 gi|257386670|ref|YP_003176443.1| - 5.2e-17 61.7 1.5 6.6e-17 61.4 0.4 1.5 1 1 1 2 2 2 1 NUDIX domain Rhodanese PF00581.15 gi|257386671|ref|YP_003176444.1| - 2.8e-12 46.9 0.0 4e-12 46.4 0.0 1.1 1 0 0 1 1 1 1 Rhodanese-like domain Lactamase_B_3 PF13483.1 gi|257386672|ref|YP_003176445.1| - 6.9e-26 90.9 0.0 8.6e-26 90.5 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain HEAT_2 PF13646.1 gi|257386673|ref|YP_003176446.1| - 5e-06 26.7 1.8 0.0041 17.3 0.7 2.2 1 1 0 2 2 2 2 HEAT repeats HEAT_EZ PF13513.1 gi|257386673|ref|YP_003176446.1| - 8.7e-05 22.8 0.1 0.0072 16.7 0.0 3.0 2 1 0 2 2 2 1 HEAT-like repeat HEAT PF02985.17 gi|257386673|ref|YP_003176446.1| - 0.0075 16.2 0.0 0.039 14.0 0.0 2.1 2 0 0 2 2 2 1 HEAT repeat DUF91 PF01939.11 gi|257386674|ref|YP_003176447.1| - 2.2e-64 216.7 0.0 2.5e-64 216.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF91 PDDEXK_4 PF14281.1 gi|257386674|ref|YP_003176447.1| - 0.16 11.8 0.0 0.2 11.4 0.0 1.2 1 0 0 1 1 1 0 PD-(D/E)XK nuclease superfamily DZR PF12773.2 gi|257386676|ref|YP_003176449.1| - 1.3e-05 24.9 2.1 1.9e-05 24.3 1.5 1.3 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|257386676|ref|YP_003176449.1| - 0.00042 19.4 3.8 0.00066 18.7 2.6 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|257386676|ref|YP_003176449.1| - 0.0021 17.4 3.2 0.0033 16.8 2.3 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zf-AD PF07776.10 gi|257386676|ref|YP_003176449.1| - 0.027 14.4 0.1 0.034 14.1 0.1 1.1 1 0 0 1 1 1 0 Zinc-finger associated domain (zf-AD) zf-tcix PF14952.1 gi|257386676|ref|YP_003176449.1| - 0.031 13.6 3.1 0.05 12.9 2.1 1.3 1 0 0 1 1 1 0 Putative treble-clef, zinc-finger, Zn-binding Spore_YhaL PF14147.1 gi|257386676|ref|YP_003176449.1| - 0.061 12.7 0.0 0.091 12.2 0.0 1.3 1 0 0 1 1 1 0 Sporulation protein YhaL UNC-79 PF14776.1 gi|257386676|ref|YP_003176449.1| - 0.19 10.0 1.9 0.22 9.8 1.3 1.0 1 0 0 1 1 1 0 Cation-channel complex subunit UNC-79 Nudix_N_2 PF14803.1 gi|257386676|ref|YP_003176449.1| - 1.1 8.9 6.9 8.9 6.0 0.0 3.0 2 1 1 3 3 3 0 Nudix N-terminal Ribosomal_S14 PF00253.16 gi|257386676|ref|YP_003176449.1| - 1.7 8.1 5.4 3.3 7.1 3.8 1.5 1 1 0 1 1 1 0 Ribosomal protein S14p/S29e UPF0547 PF10571.4 gi|257386676|ref|YP_003176449.1| - 3.6 7.3 6.8 1.1 9.0 1.0 2.0 1 1 1 2 2 2 0 Uncharacterised protein family UPF0547 Lactamase_B PF00753.22 gi|257386678|ref|YP_003176451.1| - 1.9e-16 60.2 6.6 2.9e-16 59.6 4.6 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Rhodanese PF00581.15 gi|257386678|ref|YP_003176451.1| - 5.8e-11 42.7 0.0 1e-10 41.9 0.0 1.4 1 0 0 1 1 1 1 Rhodanese-like domain DUF1853 PF08907.6 gi|257386678|ref|YP_003176451.1| - 0.0069 15.6 0.0 0.011 14.9 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1853) Lactamase_B_2 PF12706.2 gi|257386678|ref|YP_003176451.1| - 0.021 14.3 0.0 0.028 13.9 0.0 1.4 1 0 0 1 1 1 0 Beta-lactamase superfamily domain HTH_20 PF12840.2 gi|257386679|ref|YP_003176452.1| - 0.00011 21.8 0.1 0.00017 21.3 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|257386679|ref|YP_003176452.1| - 0.00064 19.3 0.2 0.00096 18.7 0.1 1.2 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|257386679|ref|YP_003176452.1| - 0.089 13.1 0.0 0.13 12.6 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain Zn-ribbon_8 PF09723.5 gi|257386680|ref|YP_003176453.1| - 0.00051 19.9 4.9 0.0066 16.3 0.9 2.5 2 0 0 2 2 2 1 Zinc ribbon domain Zn_Tnp_IS91 PF14319.1 gi|257386680|ref|YP_003176453.1| - 0.024 14.1 1.2 0.18 11.3 0.1 2.1 2 0 0 2 2 2 0 Transposase zinc-binding domain zinc_ribbon_4 PF13717.1 gi|257386680|ref|YP_003176453.1| - 0.025 14.2 2.9 5 6.8 0.1 3.3 3 0 0 3 3 3 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|257386680|ref|YP_003176453.1| - 0.036 13.6 3.9 4.5 6.9 0.1 3.2 3 0 0 3 3 3 0 zinc-ribbon domain DZR PF12773.2 gi|257386680|ref|YP_003176453.1| - 0.12 12.2 3.0 7.3 6.4 1.1 2.7 2 1 0 2 2 2 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|257386680|ref|YP_003176453.1| - 0.14 11.4 6.7 2.9 7.2 2.0 2.9 2 1 0 2 2 2 0 zinc-ribbon domain zf-ISL3 PF14690.1 gi|257386680|ref|YP_003176453.1| - 0.15 12.0 1.1 72 3.5 0.0 3.1 3 0 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Elf1 PF05129.8 gi|257386680|ref|YP_003176453.1| - 0.16 11.7 1.0 16 5.3 0.1 2.4 2 0 0 2 2 2 0 Transcription elongation factor Elf1 like RNHCP PF12647.2 gi|257386680|ref|YP_003176453.1| - 0.16 11.8 2.5 0.56 10.0 0.4 2.3 2 0 0 2 2 2 0 RNHCP domain TF_Zn_Ribbon PF08271.7 gi|257386680|ref|YP_003176453.1| - 0.55 9.6 8.4 3.4 7.0 2.4 3.7 2 1 0 2 2 2 0 TFIIB zinc-binding zf-C4_Topoisom PF01396.14 gi|257386680|ref|YP_003176453.1| - 0.77 9.3 4.8 40 3.8 0.0 3.1 2 1 1 3 3 3 0 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_2 PF13240.1 gi|257386680|ref|YP_003176453.1| - 1.5 8.3 8.3 14 5.2 0.1 3.4 3 0 0 3 3 3 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|257386680|ref|YP_003176453.1| - 4 7.3 5.9 8.4 6.3 1.6 2.7 2 1 0 2 2 2 0 Transposase zinc-ribbon domain ABC2_membrane PF01061.19 gi|257386682|ref|YP_003176455.1| - 2.6e-25 88.8 20.5 3.1e-25 88.5 14.2 1.1 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|257386682|ref|YP_003176455.1| - 3.1e-05 23.1 20.2 3.1e-05 23.1 14.0 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.22 gi|257386683|ref|YP_003176456.1| - 1.1e-32 113.2 0.0 3.3e-32 111.6 0.0 1.7 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|257386683|ref|YP_003176456.1| - 9.4e-16 58.6 0.0 5.9e-10 39.5 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_30 PF13604.1 gi|257386683|ref|YP_003176456.1| - 9e-05 22.1 0.2 0.0068 16.0 0.0 2.7 2 1 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|257386683|ref|YP_003176456.1| - 0.00032 20.2 0.0 0.001 18.6 0.0 1.7 2 0 0 2 2 2 1 AAA-like domain IstB_IS21 PF01695.12 gi|257386683|ref|YP_003176456.1| - 0.002 17.5 0.2 1.1 8.6 0.0 2.3 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_16 PF13191.1 gi|257386683|ref|YP_003176456.1| - 0.0084 16.1 0.0 0.022 14.7 0.0 1.9 2 1 0 2 2 1 1 AAA ATPase domain DUF4162 PF13732.1 gi|257386683|ref|YP_003176456.1| - 0.014 15.9 0.0 0.032 14.7 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4162) DUF4147 PF13660.1 gi|257386683|ref|YP_003176456.1| - 0.023 13.8 0.0 1.1 8.2 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4147) AAA_29 PF13555.1 gi|257386683|ref|YP_003176456.1| - 0.026 14.0 0.3 0.065 12.7 0.2 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF258 PF03193.11 gi|257386683|ref|YP_003176456.1| - 0.036 13.2 0.0 0.072 12.2 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|257386683|ref|YP_003176456.1| - 0.038 14.3 0.5 0.058 13.7 0.3 1.2 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.17 gi|257386683|ref|YP_003176456.1| - 0.046 13.1 0.0 0.38 10.1 0.0 2.1 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_15 PF13175.1 gi|257386683|ref|YP_003176456.1| - 0.048 12.7 0.0 0.79 8.6 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_24 PF13479.1 gi|257386683|ref|YP_003176456.1| - 0.049 13.2 0.1 0.15 11.6 0.0 1.7 2 0 0 2 2 2 0 AAA domain SMC_N PF02463.14 gi|257386683|ref|YP_003176456.1| - 0.065 12.4 0.0 1.7 7.8 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_25 PF13481.1 gi|257386683|ref|YP_003176456.1| - 0.068 12.5 0.1 0.15 11.3 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|257386683|ref|YP_003176456.1| - 0.068 13.0 0.0 0.26 11.1 0.0 2.0 3 0 0 3 3 3 0 AAA domain UPF0079 PF02367.12 gi|257386683|ref|YP_003176456.1| - 0.093 12.3 0.3 0.22 11.1 0.2 1.5 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_22 PF13401.1 gi|257386683|ref|YP_003176456.1| - 0.15 12.1 0.2 3.5 7.7 0.0 2.4 2 0 0 2 2 2 0 AAA domain DUF552 PF04472.7 gi|257386684|ref|YP_003176457.1| - 2.2e-17 62.7 2.7 3.3e-17 62.1 1.8 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF552) DUF2088 PF09861.4 gi|257386684|ref|YP_003176457.1| - 0.036 13.0 0.3 0.06 12.3 0.2 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF2088) DUF2529 PF10740.4 gi|257386684|ref|YP_003176457.1| - 0.081 12.3 0.4 0.095 12.1 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2529) ATP-grasp_3 PF02655.9 gi|257386684|ref|YP_003176457.1| - 0.11 12.3 0.2 0.13 12.1 0.1 1.1 1 0 0 1 1 1 0 ATP-grasp domain Peptidase_S24 PF00717.18 gi|257386684|ref|YP_003176457.1| - 0.16 11.6 1.3 0.26 10.9 0.9 1.5 1 1 0 1 1 1 0 Peptidase S24-like DUF1028 PF06267.7 gi|257386685|ref|YP_003176458.1| - 1.8e-49 167.7 0.1 2.4e-49 167.3 0.1 1.2 1 0 0 1 1 1 1 Family of unknown function (DUF1028) SIMPL PF04402.9 gi|257386686|ref|YP_003176459.1| - 6.8e-36 124.1 13.3 7.9e-36 123.8 9.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF541) DUF389 PF04087.9 gi|257386687|ref|YP_003176460.1| - 4.1e-38 130.4 17.7 4.1e-38 130.4 12.3 2.0 3 0 0 3 3 3 1 Domain of unknown function (DUF389) PKD PF00801.15 gi|257386688|ref|YP_003176461.1| - 1.9e-85 280.6 57.7 3.7e-19 68.2 2.4 6.6 6 1 1 7 7 7 5 PKD domain CBM_5_12 PF02839.9 gi|257386688|ref|YP_003176461.1| - 1.3e-21 75.8 29.1 6.2e-12 44.8 7.4 3.6 3 0 0 3 3 3 2 Carbohydrate binding domain CBM_5_12_2 PF14600.1 gi|257386688|ref|YP_003176461.1| - 4.4e-06 26.2 11.3 0.00058 19.4 0.8 3.1 2 0 0 2 2 2 2 Cellulose-binding domain REJ PF02010.10 gi|257386688|ref|YP_003176461.1| - 2.9e-05 22.5 22.9 0.069 11.4 1.2 6.8 3 3 1 4 4 4 3 REJ domain DUF4625 PF15418.1 gi|257386688|ref|YP_003176461.1| - 7.3e-05 22.8 11.0 0.61 10.2 0.0 5.7 6 0 0 6 6 6 2 Domain of unknown function (DUF4625) ChitinaseA_N PF08329.5 gi|257386688|ref|YP_003176461.1| - 0.00047 19.9 21.0 1.4 8.6 0.6 4.9 5 0 0 5 5 5 4 Chitinase A, N-terminal domain Copper-bind PF00127.15 gi|257386688|ref|YP_003176461.1| - 0.00093 19.3 2.7 0.018 15.2 0.0 3.8 4 0 0 4 4 4 1 Copper binding proteins, plastocyanin/azurin family Y_Y_Y PF07495.8 gi|257386688|ref|YP_003176461.1| - 0.0019 17.9 3.0 6.4 6.6 0.0 4.9 5 0 0 5 5 5 1 Y_Y_Y domain Toxin_58 PF15536.1 gi|257386688|ref|YP_003176461.1| - 0.024 14.4 2.5 9.7 6.0 0.0 4.1 4 0 0 4 4 4 0 Putative toxin 58 Big_3_4 PF13754.1 gi|257386688|ref|YP_003176461.1| - 0.11 12.8 83.9 0.28 11.5 7.9 7.8 5 3 0 6 6 6 0 Bacterial Ig-like domain (group 3) Cadherin PF00028.12 gi|257386688|ref|YP_003176461.1| - 0.37 11.0 13.2 51 4.2 0.2 5.4 5 0 0 5 5 5 0 Cadherin domain GFO_IDH_MocA PF01408.17 gi|257386689|ref|YP_003176462.1| - 1.8e-18 67.1 0.6 4.5e-18 65.9 0.2 1.8 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|257386689|ref|YP_003176462.1| - 0.079 12.7 0.1 0.26 11.0 0.1 1.9 2 0 0 2 2 2 0 Oxidoreductase family, C-terminal alpha/beta domain GFO_IDH_MocA PF01408.17 gi|257386690|ref|YP_003176463.1| - 1.1e-29 103.4 0.2 1.8e-29 102.6 0.2 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold F420_oxidored PF03807.12 gi|257386690|ref|YP_003176463.1| - 0.059 13.7 0.0 0.14 12.6 0.0 1.7 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent CoA_binding PF02629.14 gi|257386690|ref|YP_003176463.1| - 0.072 13.6 0.1 0.18 12.3 0.1 1.7 1 0 0 1 1 1 0 CoA binding domain Semialdhyde_dh PF01118.19 gi|257386690|ref|YP_003176463.1| - 0.093 13.0 0.0 0.19 12.0 0.0 1.6 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain MMR_HSR1 PF01926.18 gi|257386691|ref|YP_003176464.1| - 1.6e-16 60.2 0.0 2.6e-16 59.5 0.0 1.3 1 1 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|257386691|ref|YP_003176464.1| - 1.6e-12 46.9 0.2 3.4e-11 42.6 0.1 2.0 1 1 0 1 1 1 1 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|257386691|ref|YP_003176464.1| - 2.4e-07 30.4 0.0 0.00012 21.5 0.0 2.1 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain AIG1 PF04548.11 gi|257386691|ref|YP_003176464.1| - 0.0003 19.9 0.0 0.00042 19.4 0.0 1.2 1 0 0 1 1 1 1 AIG1 family MobB PF03205.9 gi|257386691|ref|YP_003176464.1| - 0.00056 19.6 0.1 0.0018 18.0 0.0 1.8 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B DUF258 PF03193.11 gi|257386691|ref|YP_003176464.1| - 0.0075 15.4 0.1 0.013 14.6 0.1 1.4 1 1 0 1 1 1 1 Protein of unknown function, DUF258 Dynamin_N PF00350.18 gi|257386691|ref|YP_003176464.1| - 0.0095 15.7 0.2 0.034 13.9 0.0 1.8 1 1 1 2 2 2 1 Dynamin family AAA_18 PF13238.1 gi|257386691|ref|YP_003176464.1| - 0.013 15.8 0.0 0.033 14.5 0.0 1.8 1 1 1 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|257386691|ref|YP_003176464.1| - 0.013 15.7 0.0 0.032 14.5 0.0 1.6 2 0 0 2 2 2 0 ABC transporter AAA_10 PF12846.2 gi|257386691|ref|YP_003176464.1| - 0.014 14.8 0.0 0.027 13.9 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain ArgK PF03308.11 gi|257386691|ref|YP_003176464.1| - 0.03 13.1 0.2 5.4 5.7 0.0 2.3 2 0 0 2 2 2 0 ArgK protein AAA_17 PF13207.1 gi|257386691|ref|YP_003176464.1| - 0.031 15.0 0.2 0.13 13.0 0.1 2.0 1 1 0 1 1 1 0 AAA domain Miro PF08477.8 gi|257386691|ref|YP_003176464.1| - 0.044 14.2 0.1 0.088 13.3 0.0 1.7 1 1 0 1 1 1 0 Miro-like protein Arch_ATPase PF01637.13 gi|257386691|ref|YP_003176464.1| - 0.048 13.3 0.0 0.099 12.3 0.0 1.4 1 0 0 1 1 1 0 Archaeal ATPase PduV-EutP PF10662.4 gi|257386691|ref|YP_003176464.1| - 0.052 13.0 0.0 0.13 11.7 0.0 1.7 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_25 PF13481.1 gi|257386691|ref|YP_003176464.1| - 0.055 12.8 0.1 0.32 10.3 0.0 2.0 1 1 1 2 2 2 0 AAA domain AAA_29 PF13555.1 gi|257386691|ref|YP_003176464.1| - 0.056 12.9 0.0 0.098 12.1 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain RNA_helicase PF00910.17 gi|257386691|ref|YP_003176464.1| - 0.067 13.3 0.0 0.14 12.3 0.0 1.5 1 0 0 1 1 1 0 RNA helicase Arf PF00025.16 gi|257386691|ref|YP_003176464.1| - 0.085 12.0 0.0 0.37 10.0 0.0 1.8 2 0 0 2 2 2 0 ADP-ribosylation factor family TIP49 PF06068.8 gi|257386691|ref|YP_003176464.1| - 0.087 11.5 0.1 0.15 10.7 0.1 1.3 1 0 0 1 1 1 0 TIP49 C-terminus AAA_22 PF13401.1 gi|257386691|ref|YP_003176464.1| - 0.1 12.7 0.0 0.52 10.4 0.0 2.1 2 1 0 2 2 2 0 AAA domain Ras PF00071.17 gi|257386691|ref|YP_003176464.1| - 0.13 11.6 0.1 0.37 10.1 0.0 1.7 2 0 0 2 2 2 0 Ras family HATPase_c PF02518.21 gi|257386692|ref|YP_003176465.1| - 1.6e-13 50.3 0.0 4.4e-13 48.9 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|257386692|ref|YP_003176465.1| - 2.9e-08 33.7 0.2 8.8e-08 32.1 0.0 2.0 2 0 0 2 2 2 1 PAS fold DUF1349 PF07081.6 gi|257386692|ref|YP_003176465.1| - 0.00013 21.3 0.0 0.00026 20.3 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1349) HATPase_c_3 PF13589.1 gi|257386692|ref|YP_003176465.1| - 0.002 17.7 0.0 0.004 16.8 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|257386692|ref|YP_003176465.1| - 0.0023 17.8 0.4 0.0067 16.3 0.3 1.8 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain Response_reg PF00072.19 gi|257386692|ref|YP_003176465.1| - 0.0077 16.2 0.1 0.02 14.9 0.1 1.6 1 0 0 1 1 1 1 Response regulator receiver domain OKR_DC_1_N PF03709.10 gi|257386692|ref|YP_003176465.1| - 0.011 15.7 0.3 0.029 14.4 0.2 1.6 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain PAS_9 PF13426.1 gi|257386692|ref|YP_003176465.1| - 0.017 15.5 0.1 0.047 14.0 0.0 1.8 2 0 0 2 2 2 0 PAS domain SUI1 PF01253.17 gi|257386693|ref|YP_003176466.1| - 5.7e-25 86.9 0.0 6.6e-25 86.7 0.0 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 Img2 PF05046.9 gi|257386693|ref|YP_003176466.1| - 0.018 15.2 0.0 0.023 14.9 0.0 1.4 1 1 0 1 1 1 0 Mitochondrial large subunit ribosomal protein (Img2) DTW PF03942.10 gi|257386693|ref|YP_003176466.1| - 0.071 12.3 0.6 0.085 12.0 0.4 1.1 1 0 0 1 1 1 0 DTW domain DUF2631 PF10939.3 gi|257386693|ref|YP_003176466.1| - 0.12 12.2 0.0 0.25 11.2 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2631) Transglut_core PF01841.14 gi|257386694|ref|YP_003176467.1| - 6.3e-29 100.4 0.7 1.5e-28 99.2 0.5 1.7 1 0 0 1 1 1 1 Transglutaminase-like superfamily Transglut_core3 PF13471.1 gi|257386694|ref|YP_003176467.1| - 7.3e-05 22.5 0.8 0.00025 20.7 0.0 2.4 2 0 0 2 2 2 1 Transglutaminase-like superfamily DUF58 PF01882.13 gi|257386695|ref|YP_003176468.1| - 1.9e-14 53.5 0.0 5e-14 52.2 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function DUF58 AAA_3 PF07726.6 gi|257386696|ref|YP_003176469.1| - 1.7e-61 205.6 0.3 2.7e-61 204.9 0.2 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|257386696|ref|YP_003176469.1| - 4.1e-13 49.2 0.0 9.7e-13 48.0 0.0 1.7 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|257386696|ref|YP_003176469.1| - 2.1e-07 31.1 0.0 3.8e-07 30.3 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) MCM PF00493.18 gi|257386696|ref|YP_003176469.1| - 2.2e-07 30.0 0.0 4.4e-05 22.4 0.0 2.1 1 1 1 2 2 2 2 MCM2/3/5 family Sigma54_activat PF00158.21 gi|257386696|ref|YP_003176469.1| - 1.2e-05 24.9 0.1 0.00015 21.2 0.0 2.1 1 1 0 1 1 1 1 Sigma-54 interaction domain Mg_chelatase PF01078.16 gi|257386696|ref|YP_003176469.1| - 8.7e-05 21.7 0.6 0.0018 17.4 0.1 2.2 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI RuvB_N PF05496.7 gi|257386696|ref|YP_003176469.1| - 0.00017 20.7 0.0 0.00076 18.6 0.0 2.0 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|257386696|ref|YP_003176469.1| - 0.018 15.1 0.0 0.054 13.6 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_2 PF07724.9 gi|257386696|ref|YP_003176469.1| - 0.058 13.3 0.0 0.19 11.6 0.0 1.8 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) AAA_18 PF13238.1 gi|257386696|ref|YP_003176469.1| - 0.11 12.8 0.0 0.56 10.5 0.0 2.1 1 1 0 1 1 1 0 AAA domain PhnA_Zn_Ribbon PF08274.7 gi|257386697|ref|YP_003176470.1| - 0.0043 16.8 3.0 0.006 16.3 2.1 1.2 1 0 0 1 1 1 1 PhnA Zinc-Ribbon Prok-RING_1 PF14446.1 gi|257386697|ref|YP_003176470.1| - 0.11 12.2 2.4 0.18 11.5 1.6 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 A2L_zn_ribbon PF08792.5 gi|257386697|ref|YP_003176470.1| - 0.28 10.7 3.7 3.5 7.1 0.1 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-RING_3 PF14369.1 gi|257386697|ref|YP_003176470.1| - 0.36 10.8 4.3 1 9.3 2.5 2.0 1 1 1 2 2 2 0 zinc-finger Zn_Tnp_IS1595 PF12760.2 gi|257386697|ref|YP_003176470.1| - 6.3 6.6 8.6 51 3.7 5.8 2.0 1 1 0 1 1 1 0 Transposase zinc-ribbon domain Nudix_N_2 PF14803.1 gi|257386697|ref|YP_003176470.1| - 9.6 5.9 8.3 1.4 8.6 2.4 2.1 2 1 0 2 2 2 0 Nudix N-terminal OrfB_Zn_ribbon PF07282.6 gi|257386699|ref|YP_003176472.1| - 4.8e-05 22.9 1.5 5.5e-05 22.7 1.0 1.0 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.5 gi|257386699|ref|YP_003176472.1| - 0.00012 21.9 4.4 0.029 14.3 0.6 2.1 2 0 0 2 2 2 2 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|257386699|ref|YP_003176472.1| - 0.00022 20.9 0.4 0.00026 20.7 0.3 1.1 1 0 0 1 1 1 1 Transposase zinc-ribbon domain zinc-ribbons_6 PF07191.7 gi|257386699|ref|YP_003176472.1| - 0.00095 18.9 0.3 0.0011 18.7 0.2 1.0 1 0 0 1 1 1 1 zinc-ribbons DZR PF12773.2 gi|257386699|ref|YP_003176472.1| - 0.0013 18.4 0.6 0.0018 18.0 0.4 1.2 1 0 0 1 1 1 1 Double zinc ribbon PADR1 PF08063.7 gi|257386699|ref|YP_003176472.1| - 0.0023 17.2 1.8 0.0027 17.0 1.2 1.1 1 0 0 1 1 1 1 PADR1 (NUC008) domain RNA_POL_M_15KD PF02150.11 gi|257386699|ref|YP_003176472.1| - 0.0031 17.1 1.2 0.005 16.4 0.8 1.3 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit zf-ribbon_3 PF13248.1 gi|257386699|ref|YP_003176472.1| - 0.0038 16.3 1.8 0.05 12.8 0.3 2.1 2 0 0 2 2 2 1 zinc-ribbon domain UPF0547 PF10571.4 gi|257386699|ref|YP_003176472.1| - 0.0038 16.8 1.6 0.17 11.6 0.1 2.0 2 0 0 2 2 2 1 Uncharacterised protein family UPF0547 zf-C2H2 PF00096.21 gi|257386699|ref|YP_003176472.1| - 0.0044 17.2 1.9 0.18 12.1 0.1 2.1 2 0 0 2 2 2 1 Zinc finger, C2H2 type PhnA_Zn_Ribbon PF08274.7 gi|257386699|ref|YP_003176472.1| - 0.0053 16.5 2.4 0.01 15.5 1.6 1.6 1 1 0 1 1 1 1 PhnA Zinc-Ribbon zf-C4_Topoisom PF01396.14 gi|257386699|ref|YP_003176472.1| - 0.0085 15.5 1.3 0.28 10.7 0.1 2.1 2 0 0 2 2 2 1 Topoisomerase DNA binding C4 zinc finger zf-C2H2_6 PF13912.1 gi|257386699|ref|YP_003176472.1| - 0.011 15.6 2.6 0.046 13.6 0.1 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger Rubredoxin PF00301.15 gi|257386699|ref|YP_003176472.1| - 0.018 14.8 1.3 2.3 8.1 0.1 2.1 2 0 0 2 2 2 0 Rubredoxin DUF1610 PF07754.6 gi|257386699|ref|YP_003176472.1| - 0.02 14.9 7.0 1.5 9.0 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf-C2H2_4 PF13894.1 gi|257386699|ref|YP_003176472.1| - 0.027 14.7 0.4 1.5 9.3 0.0 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger TF_Zn_Ribbon PF08271.7 gi|257386699|ref|YP_003176472.1| - 0.036 13.3 7.6 0.05 12.9 5.3 1.4 1 1 0 1 1 1 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.1 gi|257386699|ref|YP_003176472.1| - 0.038 13.4 4.8 0.12 11.8 3.2 1.8 1 1 1 2 2 2 0 zinc-ribbon domain IBR PF01485.16 gi|257386699|ref|YP_003176472.1| - 0.038 13.8 0.8 0.044 13.6 0.6 1.1 1 0 0 1 1 1 0 IBR domain Prim_Zn_Ribbon PF08273.7 gi|257386699|ref|YP_003176472.1| - 0.051 13.6 4.1 0.79 9.8 1.1 2.1 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase HypA PF01155.14 gi|257386699|ref|YP_003176472.1| - 0.053 13.1 0.8 0.064 12.9 0.5 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-H2C2_2 PF13465.1 gi|257386699|ref|YP_003176472.1| - 0.063 13.5 4.0 0.25 11.7 0.1 2.1 1 1 1 2 2 2 0 Zinc-finger double domain Prok-RING_1 PF14446.1 gi|257386699|ref|YP_003176472.1| - 0.074 12.8 2.8 0.56 9.9 1.7 1.9 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 zf-AN1 PF01428.11 gi|257386699|ref|YP_003176472.1| - 0.086 12.7 3.8 3.7 7.4 2.8 2.0 1 1 1 2 2 2 0 AN1-like Zinc finger TFIIS_C PF01096.13 gi|257386699|ref|YP_003176472.1| - 0.099 12.2 3.5 3.4 7.3 0.1 2.1 1 1 1 2 2 2 0 Transcription factor S-II (TFIIS) C1_1 PF00130.17 gi|257386699|ref|YP_003176472.1| - 0.1 12.3 0.2 0.1 12.3 0.1 1.1 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Sgf11 PF08209.6 gi|257386699|ref|YP_003176472.1| - 0.11 11.7 1.9 1.5 8.1 0.1 2.1 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Rep_fac-A_C PF08646.5 gi|257386699|ref|YP_003176472.1| - 0.13 11.9 0.1 0.15 11.8 0.1 1.0 1 0 0 1 1 1 0 Replication factor-A C terminal domain zinc_ribbon_5 PF13719.1 gi|257386699|ref|YP_003176472.1| - 0.13 11.8 1.4 9.5 5.8 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|257386699|ref|YP_003176472.1| - 0.17 11.6 1.3 13 5.5 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbon domain Nudix_N_2 PF14803.1 gi|257386699|ref|YP_003176472.1| - 0.18 11.5 2.8 2.1 8.1 0.3 2.1 2 0 0 2 2 2 0 Nudix N-terminal Ogr_Delta PF04606.7 gi|257386699|ref|YP_003176472.1| - 0.19 11.4 3.6 2.2 7.9 0.5 2.1 1 1 1 2 2 2 0 Ogr/Delta-like zinc finger zf-HYPF PF07503.7 gi|257386699|ref|YP_003176472.1| - 0.19 11.1 4.9 1 8.8 0.3 2.1 2 0 0 2 2 2 0 HypF finger DNA_RNApol_7kD PF03604.8 gi|257386699|ref|YP_003176472.1| - 0.19 11.2 3.5 0.75 9.3 2.5 1.8 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-TFIIB PF13453.1 gi|257386699|ref|YP_003176472.1| - 0.32 10.2 3.8 0.55 9.4 2.6 1.4 1 1 0 1 1 1 0 Transcription factor zinc-finger CpXC PF14353.1 gi|257386699|ref|YP_003176472.1| - 0.33 10.9 2.3 10 6.1 0.1 2.0 1 1 1 2 2 2 0 CpXC protein DUF35_N PF12172.3 gi|257386699|ref|YP_003176472.1| - 0.36 10.8 3.3 5.4 7.0 0.3 2.1 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF1272 PF06906.6 gi|257386699|ref|YP_003176472.1| - 0.38 10.6 5.0 0.44 10.4 0.7 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1272) zf-dskA_traR PF01258.12 gi|257386699|ref|YP_003176472.1| - 0.39 10.4 3.1 4.5 7.1 0.1 2.1 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger zf-IS66 PF13005.2 gi|257386699|ref|YP_003176472.1| - 0.4 10.6 6.4 0.71 9.8 0.7 2.0 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 XPA_N PF01286.13 gi|257386699|ref|YP_003176472.1| - 0.43 10.2 4.1 0.35 10.5 0.6 2.0 2 0 0 2 2 2 0 XPA protein N-terminal YhfH PF14149.1 gi|257386699|ref|YP_003176472.1| - 0.49 10.2 4.2 6.3 6.6 0.2 2.1 1 1 1 2 2 2 0 YhfH-like protein GFA PF04828.9 gi|257386699|ref|YP_003176472.1| - 0.54 10.2 2.4 5.4 7.0 0.1 2.0 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme A2L_zn_ribbon PF08792.5 gi|257386699|ref|YP_003176472.1| - 0.63 9.5 6.2 3.1 7.3 4.3 1.9 1 1 0 1 1 1 0 A2L zinc ribbon domain zf-RING_3 PF14369.1 gi|257386699|ref|YP_003176472.1| - 1.1 9.3 7.6 3.7 7.6 0.9 2.1 1 1 1 2 2 2 0 zinc-finger zf-Mss51 PF13824.1 gi|257386699|ref|YP_003176472.1| - 1.2 8.9 4.7 4.8 7.1 3.3 1.8 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 ADK_lid PF05191.9 gi|257386699|ref|YP_003176472.1| - 1.5 8.5 7.8 37 4.1 5.4 2.1 1 1 0 1 1 1 0 Adenylate kinase, active site lid Auto_anti-p27 PF06677.7 gi|257386699|ref|YP_003176472.1| - 1.6 8.5 4.0 8.9 6.1 0.2 2.1 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Lar_restr_allev PF14354.1 gi|257386699|ref|YP_003176472.1| - 1.6 9.0 4.7 4 7.8 3.3 1.6 1 1 0 1 1 1 0 Restriction alleviation protein Lar DNA_ligase_ZBD PF03119.11 gi|257386699|ref|YP_003176472.1| - 3.7 7.3 6.3 1.2 8.9 1.8 2.0 1 1 1 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-ISL3 PF14690.1 gi|257386699|ref|YP_003176472.1| - 4 7.5 5.8 27 4.8 4.0 2.0 1 1 0 1 1 1 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-trcl PF13451.1 gi|257386699|ref|YP_003176472.1| - 4.3 7.0 5.4 2.5 7.7 0.8 2.0 1 1 1 2 2 2 0 Probable zinc-binding domain Acetyltransf_1 PF00583.19 gi|257386700|ref|YP_003176473.1| - 2.5e-13 49.8 0.3 4.2e-13 49.1 0.2 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|257386700|ref|YP_003176473.1| - 2.8e-13 50.0 0.3 3.5e-13 49.6 0.2 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|257386700|ref|YP_003176473.1| - 6.4e-09 35.9 0.0 7.9e-09 35.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|257386700|ref|YP_003176473.1| - 7.9e-08 31.9 0.0 1.2e-07 31.3 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_7 PF13508.1 gi|257386700|ref|YP_003176473.1| - 1.4e-06 28.3 0.0 2.3e-06 27.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|257386700|ref|YP_003176473.1| - 0.00019 21.6 0.0 0.00025 21.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|257386700|ref|YP_003176473.1| - 0.0028 17.5 0.1 0.022 14.6 0.1 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|257386700|ref|YP_003176473.1| - 0.037 13.9 0.1 0.05 13.4 0.1 1.4 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|257386700|ref|YP_003176473.1| - 0.15 12.0 4.0 0.14 12.0 0.6 1.9 1 1 1 2 2 2 0 Acetyltransferase (GNAT) domain MCM PF00493.18 gi|257386701|ref|YP_003176474.1| - 2.1e-102 342.3 0.0 3.4e-102 341.6 0.0 1.3 1 0 0 1 1 1 1 MCM2/3/5 family Mg_chelatase PF01078.16 gi|257386701|ref|YP_003176474.1| - 6.7e-11 41.7 0.0 3.8e-06 26.2 0.0 2.4 1 1 1 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_5 PF07728.9 gi|257386701|ref|YP_003176474.1| - 5.2e-10 39.1 0.0 2.2e-09 37.1 0.0 2.2 2 1 0 2 2 1 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.21 gi|257386701|ref|YP_003176474.1| - 0.0001 21.8 0.0 0.00084 18.8 0.0 2.1 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA PF00004.24 gi|257386701|ref|YP_003176474.1| - 0.0018 18.4 0.7 0.0085 16.2 0.0 2.5 3 0 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|257386701|ref|YP_003176474.1| - 0.0057 16.6 4.0 0.019 14.9 0.0 2.8 2 1 1 3 3 3 1 AAA ATPase domain HTH_20 PF12840.2 gi|257386701|ref|YP_003176474.1| - 0.0096 15.7 0.2 0.06 13.1 0.1 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain AAA_22 PF13401.1 gi|257386701|ref|YP_003176474.1| - 0.01 15.9 0.2 0.1 12.7 0.1 2.7 2 1 0 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|257386701|ref|YP_003176474.1| - 0.014 15.6 0.7 0.16 12.2 0.0 2.9 2 1 2 4 4 3 0 ABC transporter AAA_10 PF12846.2 gi|257386701|ref|YP_003176474.1| - 0.015 14.7 0.1 0.15 11.5 0.0 2.3 2 1 0 2 2 2 0 AAA-like domain DUF1492 PF07374.6 gi|257386701|ref|YP_003176474.1| - 0.032 14.3 0.7 0.098 12.7 0.5 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF1492) FtsK_SpoIIIE PF01580.13 gi|257386701|ref|YP_003176474.1| - 0.035 13.5 1.8 0.12 11.7 0.0 2.7 3 1 1 4 4 4 0 FtsK/SpoIIIE family G-alpha PF00503.15 gi|257386701|ref|YP_003176474.1| - 0.059 12.0 0.0 0.2 10.2 0.0 1.9 2 0 0 2 2 2 0 G-protein alpha subunit AAA_3 PF07726.6 gi|257386701|ref|YP_003176474.1| - 0.062 12.9 0.0 0.36 10.4 0.0 2.2 2 1 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) HTH_11 PF08279.7 gi|257386701|ref|YP_003176474.1| - 0.073 12.7 0.2 0.18 11.5 0.1 1.6 1 0 0 1 1 1 0 HTH domain AAA_24 PF13479.1 gi|257386701|ref|YP_003176474.1| - 0.079 12.5 0.0 0.18 11.3 0.0 1.7 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|257386701|ref|YP_003176474.1| - 0.11 12.1 0.0 0.3 10.7 0.0 1.7 1 0 0 1 1 1 0 NACHT domain RNA_helicase PF00910.17 gi|257386701|ref|YP_003176474.1| - 0.14 12.3 0.1 0.74 10.0 0.0 2.1 2 0 0 2 2 2 0 RNA helicase Uds1 PF15456.1 gi|257386701|ref|YP_003176474.1| - 0.24 11.3 9.1 1.9 8.4 2.0 2.6 2 0 0 2 2 2 0 Up-regulated During Septation YbjQ_1 PF01906.12 gi|257386701|ref|YP_003176474.1| - 0.57 10.6 4.5 0.41 11.0 0.3 2.7 3 0 0 3 3 3 0 Putative heavy-metal-binding AAA_17 PF13207.1 gi|257386701|ref|YP_003176474.1| - 0.85 10.4 5.3 44 4.9 0.0 3.1 3 0 0 3 3 3 0 AAA domain NPV_P10 PF05531.7 gi|257386701|ref|YP_003176474.1| - 1.5 9.0 4.1 2.3 8.5 0.1 2.8 3 0 0 3 3 2 0 Nucleopolyhedrovirus P10 protein DivIC PF04977.10 gi|257386701|ref|YP_003176474.1| - 3.4 7.2 9.9 0.4 10.1 2.4 2.4 2 0 0 2 2 2 0 Septum formation initiator NERD PF08378.6 gi|257386702|ref|YP_003176475.1| - 0.0014 18.9 0.0 0.0032 17.7 0.0 1.6 1 0 0 1 1 1 1 Nuclease-related domain Sulfatase PF00884.18 gi|257386703|ref|YP_003176476.1| - 5.5e-58 196.5 0.0 7e-58 196.2 0.0 1.1 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|257386703|ref|YP_003176476.1| - 7.1e-17 61.7 0.3 3.6e-08 33.1 0.0 2.2 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF229 PF02995.12 gi|257386703|ref|YP_003176476.1| - 0.0044 15.5 0.0 0.007 14.8 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF229) Metalloenzyme PF01676.13 gi|257386703|ref|YP_003176476.1| - 0.069 12.5 0.0 0.16 11.3 0.0 1.6 1 1 0 1 1 1 0 Metalloenzyme superfamily GFO_IDH_MocA PF01408.17 gi|257386705|ref|YP_003176478.1| - 3.6e-15 56.5 0.1 5.9e-15 55.8 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold Fer4_20 PF14691.1 gi|257386705|ref|YP_003176478.1| - 0.0074 15.8 0.0 0.013 15.1 0.0 1.3 1 0 0 1 1 1 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster GFO_IDH_MocA_C PF02894.12 gi|257386705|ref|YP_003176478.1| - 0.043 13.6 0.1 0.13 12.0 0.0 1.9 2 0 0 2 2 2 0 Oxidoreductase family, C-terminal alpha/beta domain Pertus-S5-tox PF09276.5 gi|257386705|ref|YP_003176478.1| - 0.15 12.0 0.0 0.3 11.0 0.0 1.5 1 0 0 1 1 1 0 Pertussis toxin S5 subunit DUF1648 PF07853.6 gi|257386706|ref|YP_003176479.1| - 0.00018 20.9 0.2 0.00043 19.7 0.2 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF1648) HTH_20 PF12840.2 gi|257386707|ref|YP_003176480.1| - 3.8e-09 36.2 0.1 6.9e-09 35.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|257386707|ref|YP_003176480.1| - 6.1e-05 22.6 0.1 0.00011 21.7 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|257386707|ref|YP_003176480.1| - 8e-05 21.9 0.0 0.00012 21.4 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding PadR PF03551.9 gi|257386707|ref|YP_003176480.1| - 0.00071 19.3 0.0 0.0012 18.6 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_11 PF08279.7 gi|257386707|ref|YP_003176480.1| - 0.0054 16.3 0.0 0.009 15.6 0.0 1.3 1 0 0 1 1 1 1 HTH domain TrmB PF01978.14 gi|257386707|ref|YP_003176480.1| - 0.014 15.0 0.0 0.022 14.4 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|257386707|ref|YP_003176480.1| - 0.017 14.7 0.0 0.029 14.0 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_27 PF13463.1 gi|257386707|ref|YP_003176480.1| - 0.027 14.7 0.0 0.054 13.8 0.0 1.5 1 1 0 1 1 1 0 Winged helix DNA-binding domain HupE_UreJ_2 PF13795.1 gi|257386708|ref|YP_003176481.1| - 0.013 14.9 0.1 0.016 14.6 0.1 1.2 1 0 0 1 1 1 0 HupE / UreJ protein DUF981 PF06168.6 gi|257386708|ref|YP_003176481.1| - 0.051 13.3 1.7 0.066 12.9 1.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF981) Yip1 PF04893.12 gi|257386708|ref|YP_003176481.1| - 0.11 11.9 7.1 0.15 11.5 4.9 1.2 1 0 0 1 1 1 0 Yip1 domain PMP1_2 PF08114.6 gi|257386708|ref|YP_003176481.1| - 0.21 11.0 1.6 0.68 9.4 0.4 2.2 2 0 0 2 2 2 0 ATPase proteolipid family Polysacc_synt_C PF14667.1 gi|257386708|ref|YP_003176481.1| - 6.6 6.5 9.1 31 4.3 6.3 1.9 1 1 0 1 1 1 0 Polysaccharide biosynthesis C-terminal domain GFO_IDH_MocA PF01408.17 gi|257386709|ref|YP_003176482.1| - 7.1e-12 45.8 0.0 1.2e-11 45.1 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|257386709|ref|YP_003176482.1| - 0.032 14.0 0.1 0.071 12.9 0.1 1.6 1 0 0 1 1 1 0 Oxidoreductase family, C-terminal alpha/beta domain Aldo_ket_red PF00248.16 gi|257386710|ref|YP_003176483.1| - 1.7e-58 197.7 0.0 2.1e-58 197.4 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family Bac_globin PF01152.16 gi|257386711|ref|YP_003176484.1| - 1.8e-20 73.1 0.0 2.1e-20 72.9 0.0 1.0 1 0 0 1 1 1 1 Bacterial-like globin Protoglobin PF11563.3 gi|257386711|ref|YP_003176484.1| - 0.0018 17.9 0.0 0.0024 17.5 0.0 1.4 1 1 0 1 1 1 1 Protoglobin TPR_7 PF13176.1 gi|257386711|ref|YP_003176484.1| - 0.046 13.5 2.2 2.6 8.0 0.1 3.4 3 0 0 3 3 3 0 Tetratricopeptide repeat DUF429 PF04250.8 gi|257386712|ref|YP_003176485.1| - 1.1e-37 129.2 2.8 1.3e-37 129.1 1.9 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF429) CSD PF00313.17 gi|257386713|ref|YP_003176486.1| - 6.7e-21 73.8 0.1 7.6e-21 73.6 0.1 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain S1-like PF14444.1 gi|257386713|ref|YP_003176486.1| - 0.013 15.1 1.5 0.018 14.7 1.1 1.4 1 1 0 1 1 1 0 S1-like CusF_Ec PF11604.3 gi|257386713|ref|YP_003176486.1| - 0.029 14.2 0.1 0.046 13.5 0.0 1.5 1 1 0 1 1 1 0 Copper binding periplasmic protein CusF OB_RNB PF08206.6 gi|257386713|ref|YP_003176486.1| - 0.046 13.2 2.6 0.064 12.7 1.8 1.3 1 0 0 1 1 1 0 Ribonuclease B OB domain Pro_CA PF00484.14 gi|257386714|ref|YP_003176487.1| - 1.5e-24 86.7 0.0 2.2e-24 86.2 0.0 1.2 1 0 0 1 1 1 1 Carbonic anhydrase DUF2029 PF09594.5 gi|257386715|ref|YP_003176488.1| - 7.2e-27 94.4 42.1 7.2e-27 94.4 29.2 2.9 3 0 0 3 3 3 2 Protein of unknown function (DUF2029) DUF1628 PF07790.6 gi|257386717|ref|YP_003176490.1| - 4.9e-18 65.6 0.1 1.4e-17 64.2 0.0 1.7 1 1 1 2 2 2 1 Protein of unknown function (DUF1628) GST_N_2 PF13409.1 gi|257386718|ref|YP_003176491.1| - 3.2e-21 75.0 0.1 1.9e-20 72.6 0.0 2.1 2 0 0 2 2 2 1 Glutathione S-transferase, N-terminal domain GST_C_2 PF13410.1 gi|257386718|ref|YP_003176491.1| - 4.1e-14 52.2 1.8 9.7e-14 51.0 1.3 1.6 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C_3 PF14497.1 gi|257386718|ref|YP_003176491.1| - 1.3e-08 35.2 0.1 2.3e-08 34.3 0.0 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C PF00043.20 gi|257386718|ref|YP_003176491.1| - 1.3e-07 31.5 0.1 3.1e-07 30.2 0.0 1.6 2 0 0 2 2 2 1 Glutathione S-transferase, C-terminal domain GST_N_3 PF13417.1 gi|257386718|ref|YP_003176491.1| - 3.1e-05 24.1 0.0 0.0011 19.1 0.0 2.5 1 1 0 1 1 1 1 Glutathione S-transferase, N-terminal domain PhoU PF01895.14 gi|257386718|ref|YP_003176491.1| - 0.047 14.1 0.3 0.28 11.6 0.2 2.1 1 1 1 2 2 2 0 PhoU domain Ribosomal_L16 PF00252.13 gi|257386719|ref|YP_003176492.1| - 7.7e-30 103.3 0.2 9e-30 103.1 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e CstA PF02554.9 gi|257386722|ref|YP_003176495.1| - 0.023 13.3 3.7 0.028 13.0 2.5 1.0 1 0 0 1 1 1 0 Carbon starvation protein CstA YrhC PF14143.1 gi|257386722|ref|YP_003176495.1| - 0.17 11.8 1.0 0.23 11.4 0.2 1.6 2 0 0 2 2 2 0 YrhC-like protein 7TMR-DISM_7TM PF07695.6 gi|257386722|ref|YP_003176495.1| - 0.3 10.7 5.3 0.42 10.2 3.7 1.2 1 0 0 1 1 1 0 7TM diverse intracellular signalling MNHE PF01899.11 gi|257386722|ref|YP_003176495.1| - 4.1 7.0 7.4 39 3.8 5.0 2.0 1 1 0 1 1 1 0 Na+/H+ ion antiporter subunit RseC_MucC PF04246.7 gi|257386722|ref|YP_003176495.1| - 7.6 6.1 7.4 3.3 7.2 2.3 1.9 1 1 1 2 2 2 0 Positive regulator of sigma(E), RseC/MucC RimK PF08443.6 gi|257386723|ref|YP_003176496.1| - 4.4e-27 94.7 0.0 6.4e-27 94.2 0.0 1.2 1 0 0 1 1 1 1 RimK-like ATP-grasp domain ATP-grasp_4 PF13535.1 gi|257386723|ref|YP_003176496.1| - 3.3e-14 53.0 0.1 5.5e-14 52.3 0.1 1.3 1 0 0 1 1 1 1 ATP-grasp domain GSH-S_ATP PF02955.11 gi|257386723|ref|YP_003176496.1| - 6.4e-10 38.4 0.0 9.5e-10 37.8 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|257386723|ref|YP_003176496.1| - 1.9e-06 26.8 0.0 2.1e-05 23.4 0.0 2.1 2 0 0 2 2 2 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.9 gi|257386723|ref|YP_003176496.1| - 2.8e-06 27.3 0.0 5.4e-06 26.3 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|257386723|ref|YP_003176496.1| - 0.00012 21.5 0.0 0.00034 20.0 0.0 1.7 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus CPSase_L_D2 PF02786.12 gi|257386723|ref|YP_003176496.1| - 0.00032 20.0 0.0 0.00046 19.5 0.0 1.2 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATPgrasp_ST PF14397.1 gi|257386723|ref|YP_003176496.1| - 0.0011 18.1 0.0 0.03 13.4 0.0 2.0 2 0 0 2 2 2 1 Sugar-transfer associated ATP-grasp TTL PF03133.10 gi|257386723|ref|YP_003176496.1| - 0.0019 17.1 0.0 0.037 12.9 0.0 2.0 2 0 0 2 2 2 1 Tubulin-tyrosine ligase family ATP-grasp PF02222.17 gi|257386723|ref|YP_003176496.1| - 0.011 15.0 0.0 0.021 14.1 0.0 1.4 1 1 0 1 1 1 0 ATP-grasp domain PPDK_N PF01326.14 gi|257386723|ref|YP_003176496.1| - 0.065 12.2 0.0 0.18 10.7 0.0 1.6 1 1 1 2 2 2 0 Pyruvate phosphate dikinase, PEP/pyruvate binding domain HSP20 PF00011.16 gi|257386724|ref|YP_003176497.1| - 8.5e-12 44.8 0.1 3.5e-10 39.6 0.1 2.1 1 1 0 1 1 1 1 Hsp20/alpha crystallin family GvpH PF05455.6 gi|257386724|ref|YP_003176497.1| - 3.9e-06 26.6 1.2 5e-06 26.2 0.8 1.2 1 0 0 1 1 1 1 GvpH Gp_dh_C PF02800.15 gi|257386725|ref|YP_003176498.1| - 2.3e-60 202.6 0.0 3.2e-60 202.1 0.0 1.2 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Gp_dh_N PF00044.19 gi|257386725|ref|YP_003176498.1| - 3.8e-50 169.7 0.0 6.1e-50 169.1 0.0 1.3 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DapB_N PF01113.15 gi|257386725|ref|YP_003176498.1| - 0.0055 16.6 0.2 0.02 14.8 0.0 2.2 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus 2-Hacid_dh_C PF02826.14 gi|257386725|ref|YP_003176498.1| - 0.12 11.4 0.0 0.21 10.7 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain MC1 PF05854.6 gi|257386726|ref|YP_003176499.1| - 5.3e-46 154.5 0.3 6.1e-46 154.3 0.2 1.0 1 0 0 1 1 1 1 Non-histone chromosomal protein MC1 SymE_toxin PF08845.5 gi|257386727|ref|YP_003176500.1| - 0.012 15.4 0.0 0.013 15.3 0.0 1.1 1 0 0 1 1 1 0 Toxin SymE, type I toxin-antitoxin system Antitoxin-MazE PF04014.13 gi|257386727|ref|YP_003176500.1| - 0.013 15.1 0.2 0.021 14.5 0.1 1.3 1 0 0 1 1 1 0 Antidote-toxin recognition MazE DHO_dh PF01180.16 gi|257386728|ref|YP_003176501.1| - 1.9e-80 270.0 0.0 2.1e-80 269.8 0.0 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase NMO PF03060.10 gi|257386728|ref|YP_003176501.1| - 0.0034 16.5 0.2 0.007 15.5 0.1 1.4 1 0 0 1 1 1 1 Nitronate monooxygenase PcrB PF01884.12 gi|257386728|ref|YP_003176501.1| - 0.048 12.9 0.2 0.098 11.8 0.1 1.4 1 0 0 1 1 1 0 PcrB family His_biosynth PF00977.16 gi|257386728|ref|YP_003176501.1| - 0.081 12.1 0.0 0.14 11.3 0.0 1.3 1 0 0 1 1 1 0 Histidine biosynthesis protein B5 PF03484.10 gi|257386729|ref|YP_003176502.1| - 7.5e-16 57.7 0.1 4.6e-14 51.9 0.1 2.6 2 0 0 2 2 2 1 tRNA synthetase B5 domain B3_4 PF03483.12 gi|257386729|ref|YP_003176502.1| - 1.1e-11 44.5 0.0 2.5e-07 30.3 0.0 2.3 2 0 0 2 2 2 2 B3/4 domain tRNA-synt_2d PF01409.15 gi|257386729|ref|YP_003176502.1| - 0.0069 15.6 0.0 0.011 14.8 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA-synt_2d PF01409.15 gi|257386730|ref|YP_003176503.1| - 1e-79 267.2 0.0 1.3e-79 266.9 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA-synt_2 PF00152.15 gi|257386730|ref|YP_003176503.1| - 4.6e-05 22.3 1.4 0.084 11.6 0.1 2.3 2 0 0 2 2 2 2 tRNA synthetases class II (D, K and N) tRNA-synt_2b PF00587.20 gi|257386730|ref|YP_003176503.1| - 0.076 12.5 0.0 0.24 10.9 0.0 1.8 2 0 0 2 2 2 0 tRNA synthetase class II core domain (G, H, P, S and T) tRNA-synt_1b PF00579.20 gi|257386731|ref|YP_003176504.1| - 9.6e-43 146.3 0.0 7.7e-25 87.6 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (W and Y) DUF2789 PF10982.3 gi|257386731|ref|YP_003176504.1| - 0.077 13.0 0.7 4.1 7.4 0.7 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2789) tRNA_int_endo PF01974.12 gi|257386732|ref|YP_003176505.1| - 1.1e-32 111.7 0.0 1.3e-20 72.9 0.0 2.4 2 0 0 2 2 2 2 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.9 gi|257386732|ref|YP_003176505.1| - 6.1e-30 102.5 0.0 9.7e-14 50.6 0.0 2.5 2 0 0 2 2 2 2 tRNA intron endonuclease, N-terminal domain tRNA_int_end_N2 PF12928.2 gi|257386732|ref|YP_003176505.1| - 0.058 12.8 0.0 6.4 6.3 0.0 2.7 3 0 0 3 3 3 0 tRNA-splicing endonuclease subunit sen54 N-term zf-C4_Topoisom PF01396.14 gi|257386733|ref|YP_003176506.1| - 3.8e-10 39.1 3.6 1.6e-07 30.7 0.1 2.7 2 0 0 2 2 2 2 Topoisomerase DNA binding C4 zinc finger DUF91 PF01939.11 gi|257386733|ref|YP_003176506.1| - 3e-05 23.2 0.0 4.3e-05 22.7 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF91 zinc-ribbons_6 PF07191.7 gi|257386733|ref|YP_003176506.1| - 0.0024 17.6 6.7 0.0083 15.8 0.7 2.8 2 2 1 3 3 3 1 zinc-ribbons Auto_anti-p27 PF06677.7 gi|257386733|ref|YP_003176506.1| - 0.057 13.1 11.3 1.4 8.7 0.3 4.4 4 1 0 4 4 4 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-TFIIB PF13453.1 gi|257386733|ref|YP_003176506.1| - 0.43 9.8 0.0 0.43 9.8 0.0 3.3 4 1 0 4 4 4 0 Transcription factor zinc-finger Rep_fac-A_C PF08646.5 gi|257386733|ref|YP_003176506.1| - 0.73 9.5 2.3 3.4 7.3 0.1 2.2 1 1 1 2 2 2 0 Replication factor-A C terminal domain zinc_ribbon_4 PF13717.1 gi|257386733|ref|YP_003176506.1| - 1 9.1 9.2 1 9.1 0.6 4.0 4 0 0 4 4 4 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|257386733|ref|YP_003176506.1| - 1.1 8.9 9.2 1.1 8.9 0.5 4.1 4 0 0 4 4 4 0 zinc-ribbon domain DNA_ligase_ZBD PF03119.11 gi|257386733|ref|YP_003176506.1| - 1.4 8.7 12.4 1.1 9.0 2.8 3.1 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain DUF1272 PF06906.6 gi|257386733|ref|YP_003176506.1| - 4.2 7.3 8.3 8.6 6.3 0.0 3.5 3 1 0 3 3 3 0 Protein of unknown function (DUF1272) zf-C3H1 PF10650.4 gi|257386733|ref|YP_003176506.1| - 4.8 6.7 8.7 17 5.0 0.0 4.1 4 0 0 4 4 4 0 Putative zinc-finger domain HypA PF01155.14 gi|257386733|ref|YP_003176506.1| - 4.9 6.8 8.3 0.64 9.7 0.8 2.6 1 1 3 4 4 4 0 Hydrogenase expression/synthesis hypA family Prok-RING_1 PF14446.1 gi|257386733|ref|YP_003176506.1| - 7.3 6.4 11.9 0.33 10.7 0.2 3.9 5 0 0 5 5 5 0 Prokaryotic RING finger family 1 HAD_2 PF13419.1 gi|257386736|ref|YP_003176509.1| - 5.9e-26 91.7 0.0 7e-26 91.5 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|257386736|ref|YP_003176509.1| - 6.9e-14 52.7 0.0 1.5e-10 41.8 0.0 2.1 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|257386736|ref|YP_003176509.1| - 3.8e-10 39.3 0.1 1e-09 37.9 0.2 1.6 2 0 0 2 2 2 1 HAD-hyrolase-like HAD PF12710.2 gi|257386736|ref|YP_003176509.1| - 1.2e-09 38.5 0.0 2.9e-09 37.3 0.0 1.6 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|257386736|ref|YP_003176509.1| - 0.0015 18.3 0.0 0.012 15.4 0.0 2.2 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase NT5C PF06941.7 gi|257386736|ref|YP_003176509.1| - 0.0026 17.2 0.0 0.0041 16.6 0.0 1.3 1 0 0 1 1 1 1 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) DEAD PF00270.24 gi|257386737|ref|YP_003176510.1| - 1.5e-26 92.8 0.0 3.5e-26 91.6 0.0 1.6 1 0 0 1 1 1 1 DEAD/DEAH box helicase Sec63 PF02889.11 gi|257386737|ref|YP_003176510.1| - 4.1e-15 55.8 0.0 5.8e-15 55.3 0.0 1.2 1 0 0 1 1 1 1 Sec63 Brl domain Helicase_C PF00271.26 gi|257386737|ref|YP_003176510.1| - 4.7e-09 35.9 0.0 1.5e-08 34.3 0.0 1.9 2 0 0 2 2 2 1 Helicase conserved C-terminal domain HHH_5 PF14520.1 gi|257386737|ref|YP_003176510.1| - 1.3e-07 31.6 0.6 4.4e-07 29.9 0.4 2.0 1 0 0 1 1 1 1 Helix-hairpin-helix domain ResIII PF04851.10 gi|257386737|ref|YP_003176510.1| - 7.5e-06 25.9 0.0 1.4e-05 24.9 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DNA_pol_lambd_f PF10391.4 gi|257386737|ref|YP_003176510.1| - 0.00086 18.8 0.0 0.0031 17.0 0.0 1.9 2 0 0 2 2 2 1 Fingers domain of DNA polymerase lambda T2SE PF00437.15 gi|257386737|ref|YP_003176510.1| - 0.052 12.4 0.0 0.09 11.6 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein HemN_C PF06969.11 gi|257386737|ref|YP_003176510.1| - 0.064 13.3 0.0 0.2 11.7 0.0 1.9 1 0 0 1 1 1 0 HemN C-terminal domain HHH PF00633.18 gi|257386737|ref|YP_003176510.1| - 0.065 12.9 0.1 0.2 11.4 0.1 1.8 1 0 0 1 1 1 0 Helix-hairpin-helix motif Radical_SAM PF04055.16 gi|257386738|ref|YP_003176511.1| - 6.9e-11 42.5 0.1 1.5e-10 41.5 0.0 1.6 1 1 0 1 1 1 1 Radical SAM superfamily Lar_restr_allev PF14354.1 gi|257386739|ref|YP_003176512.1| - 0.0012 19.0 4.7 0.012 15.8 0.8 3.0 3 0 0 3 3 3 1 Restriction alleviation protein Lar zinc_ribbon_5 PF13719.1 gi|257386739|ref|YP_003176512.1| - 0.0013 18.2 0.3 0.0022 17.5 0.2 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|257386739|ref|YP_003176512.1| - 0.0015 18.1 0.3 0.0027 17.3 0.2 1.4 1 0 0 1 1 1 1 zinc-ribbon domain Fer4_10 PF13237.1 gi|257386739|ref|YP_003176512.1| - 0.011 15.5 1.4 0.018 14.8 1.0 1.3 1 0 0 1 1 1 0 4Fe-4S dicluster domain DNA_ligase_ZBD PF03119.11 gi|257386739|ref|YP_003176512.1| - 0.044 13.4 0.4 0.12 12.0 0.3 1.8 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain E1_dh PF00676.15 gi|257386740|ref|YP_003176513.1| - 2.9e-89 298.7 0.0 3.4e-89 298.5 0.0 1.0 1 0 0 1 1 1 1 Dehydrogenase E1 component DXP_synthase_N PF13292.1 gi|257386740|ref|YP_003176513.1| - 2.7e-07 29.8 0.0 4e-07 29.2 0.0 1.2 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase Transketolase_N PF00456.16 gi|257386740|ref|YP_003176513.1| - 2.9e-05 23.0 0.0 6.3e-05 21.9 0.0 1.5 1 1 1 2 2 2 1 Transketolase, thiamine diphosphate binding domain HTH_41 PF14502.1 gi|257386740|ref|YP_003176513.1| - 0.075 12.6 0.0 0.15 11.6 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Transket_pyr PF02779.19 gi|257386741|ref|YP_003176514.1| - 1.4e-49 167.9 0.0 1.9e-49 167.5 0.0 1.2 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.15 gi|257386741|ref|YP_003176514.1| - 1.3e-37 128.5 0.3 3e-37 127.3 0.1 1.7 2 0 0 2 2 2 1 Transketolase, C-terminal domain 2-oxoacid_dh PF00198.18 gi|257386742|ref|YP_003176515.1| - 1.8e-80 269.5 0.0 2.4e-80 269.1 0.0 1.2 1 0 0 1 1 1 1 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Biotin_lipoyl PF00364.17 gi|257386742|ref|YP_003176515.1| - 3.7e-23 80.9 0.4 6.7e-23 80.1 0.3 1.5 1 0 0 1 1 1 1 Biotin-requiring enzyme E3_binding PF02817.12 gi|257386742|ref|YP_003176515.1| - 2.7e-21 74.8 1.2 1.3e-13 50.2 0.2 3.6 3 0 0 3 3 3 2 e3 binding domain Biotin_lipoyl_2 PF13533.1 gi|257386742|ref|YP_003176515.1| - 1.4e-08 34.2 0.5 0.0026 17.3 0.1 2.7 1 1 1 2 2 2 2 Biotin-lipoyl like HlyD_2 PF12700.2 gi|257386742|ref|YP_003176515.1| - 0.00011 21.4 0.1 0.21 10.7 0.1 2.3 1 1 1 2 2 2 2 HlyD family secretion protein HlyD_3 PF13437.1 gi|257386742|ref|YP_003176515.1| - 0.00015 22.1 0.5 0.0077 16.5 0.1 2.5 1 1 1 2 2 2 1 HlyD family secretion protein GCV_H PF01597.14 gi|257386742|ref|YP_003176515.1| - 0.00041 20.0 0.1 0.00097 18.8 0.1 1.6 1 0 0 1 1 1 1 Glycine cleavage H-protein RnfC_N PF13375.1 gi|257386742|ref|YP_003176515.1| - 0.0022 17.6 0.2 0.0055 16.3 0.1 1.7 1 0 0 1 1 1 1 RnfC Barrel sandwich hybrid domain DUF2118 PF09891.4 gi|257386742|ref|YP_003176515.1| - 0.06 13.0 0.1 0.13 12.0 0.1 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2118) CAT PF00302.13 gi|257386742|ref|YP_003176515.1| - 0.066 12.8 0.0 0.1 12.1 0.0 1.2 1 0 0 1 1 1 0 Chloramphenicol acetyltransferase PQQ_3 PF13570.1 gi|257386743|ref|YP_003176516.1| - 2.9e-88 287.9 46.4 2.9e-12 46.4 0.5 8.2 8 0 0 8 8 8 8 PQQ-like domain PQQ_2 PF13360.1 gi|257386743|ref|YP_003176516.1| - 7.5e-66 221.9 22.7 2.4e-28 99.2 2.5 4.1 1 1 3 4 4 4 4 PQQ-like domain PQQ PF01011.16 gi|257386743|ref|YP_003176516.1| - 1e-58 192.0 27.1 1.4e-10 40.1 0.1 9.2 9 0 0 9 9 9 8 PQQ enzyme repeat Rod_cone_degen PF15201.1 gi|257386743|ref|YP_003176516.1| - 1.1 9.1 17.6 4.4 7.2 0.1 5.6 6 1 1 7 7 7 0 Progressive rod-cone degeneration ABC_tran PF00005.22 gi|257386744|ref|YP_003176517.1| - 1.8e-25 89.7 0.0 2.4e-25 89.4 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|257386744|ref|YP_003176517.1| - 3.5e-14 53.4 0.0 1.3e-11 44.9 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|257386744|ref|YP_003176517.1| - 0.0081 15.2 0.0 0.024 13.7 0.0 1.6 2 0 0 2 2 2 1 AAA ATPase domain AAA_13 PF13166.1 gi|257386744|ref|YP_003176517.1| - 0.012 14.0 0.1 1.3 7.4 0.0 2.0 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.1 gi|257386744|ref|YP_003176517.1| - 0.013 15.3 0.0 0.021 14.7 0.0 1.4 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.1 gi|257386744|ref|YP_003176517.1| - 0.042 14.1 0.0 0.065 13.5 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|257386744|ref|YP_003176517.1| - 0.043 14.0 0.9 4.6 7.4 0.3 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|257386744|ref|YP_003176517.1| - 0.074 13.1 0.0 1 9.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|257386744|ref|YP_003176517.1| - 0.082 12.4 0.0 0.17 11.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.17 gi|257386744|ref|YP_003176517.1| - 0.14 11.5 0.1 0.26 10.7 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain Oxidored_FMN PF00724.15 gi|257386746|ref|YP_003176519.1| - 9.5e-32 110.3 0.0 7.9e-27 94.1 0.0 2.1 2 0 0 2 2 2 2 NADH:flavin oxidoreductase / NADH oxidase family tRNA-synt_1 PF00133.17 gi|257386747|ref|YP_003176520.1| - 1.3e-72 244.6 1.7 1.4e-27 95.9 0.1 4.7 2 1 2 4 4 4 4 tRNA synthetases class I (I, L, M and V) tRNA-synt_1_2 PF13603.1 gi|257386747|ref|YP_003176520.1| - 1.9e-49 167.4 0.0 3.3e-49 166.6 0.0 1.4 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1g PF09334.6 gi|257386747|ref|YP_003176520.1| - 7.8e-40 136.7 0.0 1e-25 90.2 0.0 4.0 3 1 0 3 3 3 2 tRNA synthetases class I (M) Anticodon_1 PF08264.8 gi|257386747|ref|YP_003176520.1| - 1.7e-16 60.3 0.0 3.7e-16 59.2 0.0 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.14 gi|257386747|ref|YP_003176520.1| - 6.2e-09 35.3 0.0 7.1e-06 25.3 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.13 gi|257386747|ref|YP_003176520.1| - 5.2e-06 25.3 0.0 0.00044 19.0 0.0 2.6 2 0 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1d PF00750.14 gi|257386747|ref|YP_003176520.1| - 0.0011 17.8 0.0 0.46 9.2 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (R) DNA_ligase_ZBD PF03119.11 gi|257386747|ref|YP_003176520.1| - 0.018 14.7 4.7 0.25 11.0 0.0 3.1 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain tRNA-synt_1b PF00579.20 gi|257386747|ref|YP_003176520.1| - 0.028 13.5 0.0 0.05 12.7 0.0 1.3 1 0 0 1 1 1 0 tRNA synthetases class I (W and Y) DZR PF12773.2 gi|257386747|ref|YP_003176520.1| - 0.079 12.7 7.0 0.49 10.2 0.3 2.9 2 1 0 2 2 2 0 Double zinc ribbon Nudix_N_2 PF14803.1 gi|257386747|ref|YP_003176520.1| - 2.5 7.8 5.5 13 5.5 0.2 3.6 3 0 0 3 3 3 0 Nudix N-terminal Zn-ribbon_8 PF09723.5 gi|257386747|ref|YP_003176520.1| - 2.6 8.0 4.9 3.8 7.5 0.1 3.0 3 0 0 3 3 3 0 Zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|257386747|ref|YP_003176520.1| - 2.7 7.3 9.0 9 5.7 0.4 3.5 3 0 0 3 3 3 0 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|257386747|ref|YP_003176520.1| - 3.8 6.8 10.7 64 2.9 5.5 3.3 2 1 0 2 2 2 0 zinc-ribbon domain GAF_2 PF13185.1 gi|257386748|ref|YP_003176521.1| - 9.3e-23 81.3 8.5 5.5e-12 46.4 0.3 3.6 3 1 0 3 3 3 2 GAF domain GAF_3 PF13492.1 gi|257386748|ref|YP_003176521.1| - 4.9e-19 68.6 0.6 1.8e-10 41.0 0.1 3.2 3 0 0 3 3 3 2 GAF domain HTH_10 PF04967.7 gi|257386748|ref|YP_003176521.1| - 1e-17 63.4 0.0 2.3e-17 62.2 0.0 1.7 1 0 0 1 1 1 1 HTH DNA binding domain PAS_9 PF13426.1 gi|257386748|ref|YP_003176521.1| - 1.3e-16 60.8 0.1 9.8e-16 58.0 0.0 2.5 2 0 0 2 2 2 1 PAS domain GAF PF01590.21 gi|257386748|ref|YP_003176521.1| - 2.4e-15 56.9 2.1 9.3e-09 35.5 0.3 3.3 3 0 0 3 3 3 2 GAF domain PAS PF00989.19 gi|257386748|ref|YP_003176521.1| - 5.3e-13 48.7 0.2 2e-12 46.8 0.0 2.2 2 0 0 2 2 2 1 PAS fold PAS_4 PF08448.5 gi|257386748|ref|YP_003176521.1| - 1.9e-12 47.1 0.6 1.9e-12 47.1 0.4 3.1 4 0 0 4 4 4 1 PAS fold PAS_8 PF13188.1 gi|257386748|ref|YP_003176521.1| - 1.6e-07 30.8 0.0 7.2e-07 28.8 0.0 2.2 1 0 0 1 1 1 1 PAS domain PAS_7 PF12860.2 gi|257386748|ref|YP_003176521.1| - 0.015 15.2 1.0 0.063 13.2 0.0 2.6 2 1 0 2 2 2 0 PAS fold PAS_10 PF13596.1 gi|257386748|ref|YP_003176521.1| - 0.024 14.9 0.0 0.079 13.2 0.0 1.9 1 0 0 1 1 1 0 PAS domain PAS_3 PF08447.6 gi|257386748|ref|YP_003176521.1| - 0.039 14.0 0.0 0.09 12.8 0.0 1.7 1 0 0 1 1 1 0 PAS fold Epimerase PF01370.16 gi|257386749|ref|YP_003176522.1| - 7.4e-28 97.5 0.1 6.8e-27 94.4 0.1 1.9 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|257386749|ref|YP_003176522.1| - 4.8e-14 51.9 0.2 3.9e-12 45.6 0.1 2.0 1 1 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.10 gi|257386749|ref|YP_003176522.1| - 2.3e-13 49.7 1.2 6.9e-13 48.1 0.1 1.9 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|257386749|ref|YP_003176522.1| - 3.1e-07 29.5 1.9 0.00033 19.6 0.1 2.9 2 1 1 3 3 3 2 Male sterility protein 3Beta_HSD PF01073.14 gi|257386749|ref|YP_003176522.1| - 1.4e-05 23.9 0.7 0.00054 18.7 0.4 2.6 1 1 1 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.1 gi|257386749|ref|YP_003176522.1| - 0.0012 18.9 1.0 0.0017 18.4 0.7 1.3 1 0 0 1 1 1 1 NADH(P)-binding B12-binding PF02310.14 gi|257386749|ref|YP_003176522.1| - 0.0039 17.0 3.4 0.21 11.4 2.4 2.3 1 1 0 1 1 1 1 B12 binding domain UDPG_MGDP_dh_N PF03721.9 gi|257386749|ref|YP_003176522.1| - 0.0095 15.3 0.0 0.016 14.6 0.0 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Chitin_synth_2 PF03142.10 gi|257386749|ref|YP_003176522.1| - 0.13 10.6 0.0 0.18 10.1 0.0 1.1 1 0 0 1 1 1 0 Chitin synthase TOH_N PF12549.3 gi|257386749|ref|YP_003176522.1| - 0.15 11.6 0.4 11 5.6 0.0 3.3 3 0 0 3 3 3 0 Tyrosine hydroxylase N terminal adh_short PF00106.20 gi|257386749|ref|YP_003176522.1| - 1.1 9.2 12.0 0.29 11.0 1.1 2.5 2 1 1 3 3 3 0 short chain dehydrogenase MatE PF01554.13 gi|257386751|ref|YP_003176524.1| - 6.9e-53 178.5 26.5 2.2e-27 95.6 4.1 3.1 2 1 1 3 3 3 2 MatE Polysacc_synt_C PF14667.1 gi|257386751|ref|YP_003176524.1| - 3.3e-08 33.4 12.8 3.3e-08 33.4 8.8 4.5 4 2 1 5 5 5 2 Polysaccharide biosynthesis C-terminal domain DAO PF01266.19 gi|257386752|ref|YP_003176525.1| - 3.9e-25 88.5 0.0 5.5e-25 88.0 0.0 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Mqo PF06039.10 gi|257386752|ref|YP_003176525.1| - 2.9e-23 81.8 0.1 1e-21 76.7 0.0 2.0 1 1 0 1 1 1 1 Malate:quinone oxidoreductase (Mqo) NAD_binding_9 PF13454.1 gi|257386752|ref|YP_003176525.1| - 0.005 16.6 0.1 1.1 8.9 0.0 2.3 2 0 0 2 2 2 2 FAD-NAD(P)-binding Pyr_redox_2 PF07992.9 gi|257386752|ref|YP_003176525.1| - 0.0066 16.3 0.1 0.62 9.9 0.0 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|257386752|ref|YP_003176525.1| - 0.015 15.7 0.2 5.6 7.4 0.0 2.5 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Strep_his_triad PF04270.8 gi|257386752|ref|YP_003176525.1| - 0.015 14.9 0.3 0.38 10.4 0.0 2.8 2 0 0 2 2 2 0 Streptococcal histidine triad protein NAD_binding_8 PF13450.1 gi|257386752|ref|YP_003176525.1| - 0.028 14.4 0.1 0.088 12.8 0.0 1.9 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|257386752|ref|YP_003176525.1| - 0.088 11.6 0.0 0.11 11.3 0.0 1.1 1 0 0 1 1 1 0 FAD binding domain HI0933_like PF03486.9 gi|257386752|ref|YP_003176525.1| - 0.11 10.8 0.2 0.55 8.6 0.0 1.9 2 0 0 2 2 2 0 HI0933-like protein Thi4 PF01946.12 gi|257386752|ref|YP_003176525.1| - 0.13 11.3 0.8 1 8.3 0.1 2.1 2 0 0 2 2 2 0 Thi4 family Fer4_15 PF13459.1 gi|257386753|ref|YP_003176526.1| - 4.8e-17 62.2 3.3 5.8e-17 62.0 2.3 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|257386753|ref|YP_003176526.1| - 8.6e-08 32.4 1.1 1.7e-07 31.4 0.7 1.5 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_19 PF06902.6 gi|257386753|ref|YP_003176526.1| - 0.071 12.9 0.3 0.48 10.2 0.2 2.0 1 1 0 1 1 1 0 Divergent 4Fe-4S mono-cluster Fer4_10 PF13237.1 gi|257386753|ref|YP_003176526.1| - 0.074 12.8 0.2 0.17 11.7 0.1 1.8 1 1 0 1 1 1 0 4Fe-4S dicluster domain Fer4 PF00037.22 gi|257386753|ref|YP_003176526.1| - 0.24 11.0 1.9 5 6.8 0.1 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain DEAD PF00270.24 gi|257386754|ref|YP_003176527.1| - 7.6e-26 90.6 0.0 1.3e-25 89.8 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|257386754|ref|YP_003176527.1| - 1.9e-06 27.6 0.0 4.2e-06 26.5 0.0 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain HHH_5 PF14520.1 gi|257386754|ref|YP_003176527.1| - 8.7e-06 25.8 1.1 8.7e-06 25.8 0.7 4.0 3 1 1 4 4 4 1 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.4 gi|257386754|ref|YP_003176527.1| - 0.00027 20.4 0.0 0.00079 18.9 0.0 1.8 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda ResIII PF04851.10 gi|257386754|ref|YP_003176527.1| - 0.0028 17.5 0.0 0.013 15.3 0.0 2.0 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit HHH PF00633.18 gi|257386754|ref|YP_003176527.1| - 0.052 13.2 0.5 0.74 9.6 0.0 3.1 3 0 0 3 3 3 0 Helix-hairpin-helix motif gpUL132 PF11359.3 gi|257386754|ref|YP_003176527.1| - 0.22 10.8 0.7 0.38 10.0 0.5 1.3 1 0 0 1 1 1 0 Glycoprotein UL132 CGI-121 PF08617.5 gi|257386755|ref|YP_003176528.1| - 3.1e-15 56.2 0.0 3.5e-15 56.0 0.0 1.1 1 0 0 1 1 1 1 Kinase binding protein CGI-121 NicO PF03824.11 gi|257386756|ref|YP_003176529.1| - 1.5e-08 34.3 6.8 1.5e-08 34.3 4.7 2.2 3 0 0 3 3 3 1 High-affinity nickel-transport protein Zip PF02535.17 gi|257386756|ref|YP_003176529.1| - 0.0068 15.4 0.5 0.0068 15.4 0.3 1.7 2 0 0 2 2 2 1 ZIP Zinc transporter Phage_holin_2 PF04550.7 gi|257386756|ref|YP_003176529.1| - 0.21 11.6 2.9 0.41 10.7 0.5 2.5 2 0 0 2 2 2 0 Phage holin family 2 Adenylsucc_synt PF00709.16 gi|257386757|ref|YP_003176530.1| - 1.7e-146 488.1 0.0 3.4e-146 487.1 0.0 1.4 1 1 0 1 1 1 1 Adenylosuccinate synthetase DUF1684 PF07920.6 gi|257386758|ref|YP_003176531.1| - 1.8e-55 186.7 0.2 2.3e-55 186.3 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1684) RVT_3 PF13456.1 gi|257386759|ref|YP_003176532.1| - 4.5e-08 32.7 0.1 6.2e-08 32.3 0.0 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like DUF839 PF05787.8 gi|257386761|ref|YP_003176534.1| - 4.2e-19 68.8 16.2 1.7e-17 63.5 8.3 3.6 2 1 1 3 3 3 2 Bacterial protein of unknown function (DUF839) EF-hand_1 PF00036.27 gi|257386761|ref|YP_003176534.1| - 0.00064 18.8 4.6 0.51 9.7 0.6 3.1 2 0 0 2 2 2 2 EF hand EF-hand_7 PF13499.1 gi|257386761|ref|YP_003176534.1| - 0.0072 16.4 1.9 0.09 12.9 1.0 2.9 2 0 0 2 2 2 1 EF-hand domain pair EF-hand_6 PF13405.1 gi|257386761|ref|YP_003176534.1| - 0.15 12.0 5.7 1.3 9.0 0.3 3.3 3 0 0 3 3 3 0 EF-hand domain PTPA PF03095.10 gi|257386761|ref|YP_003176534.1| - 1.2 8.2 1.4 1.4 8.0 0.2 1.6 2 0 0 2 2 2 0 Phosphotyrosyl phosphate activator (PTPA) protein Cupin_2 PF07883.6 gi|257386763|ref|YP_003176536.1| - 2.7e-11 42.7 0.4 3.8e-11 42.3 0.3 1.2 1 0 0 1 1 1 1 Cupin domain Cupin_3 PF05899.7 gi|257386763|ref|YP_003176536.1| - 7.1e-05 22.1 0.1 0.0001 21.5 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF861) AraC_binding_2 PF14525.1 gi|257386763|ref|YP_003176536.1| - 8.4e-05 22.2 0.1 8.6e-05 22.1 0.1 1.1 1 0 0 1 1 1 1 AraC-binding-like domain AraC_binding PF02311.14 gi|257386763|ref|YP_003176536.1| - 0.043 13.5 0.0 0.055 13.1 0.0 1.2 1 0 0 1 1 1 0 AraC-like ligand binding domain MannoseP_isomer PF01050.13 gi|257386763|ref|YP_003176536.1| - 0.12 11.9 0.0 0.15 11.7 0.0 1.1 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase Cpn60_TCP1 PF00118.19 gi|257386764|ref|YP_003176537.1| - 4.6e-162 540.0 8.1 5.2e-162 539.8 5.6 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family KH_1 PF00013.24 gi|257386765|ref|YP_003176538.1| - 1.8e-18 65.9 2.2 5.4e-09 35.5 0.2 2.2 2 0 0 2 2 2 2 KH domain KH_3 PF13014.1 gi|257386765|ref|YP_003176538.1| - 4.1e-09 35.8 2.1 0.0002 20.9 0.1 2.5 2 0 0 2 2 2 2 KH domain KH_2 PF07650.12 gi|257386765|ref|YP_003176538.1| - 2.6e-05 23.7 3.3 0.015 14.8 0.1 2.8 2 1 0 2 2 2 2 KH domain KH_4 PF13083.1 gi|257386765|ref|YP_003176538.1| - 0.01 15.4 0.9 4 7.1 0.2 2.8 2 1 0 2 2 2 2 KH domain RIO1 PF01163.17 gi|257386766|ref|YP_003176539.1| - 3.1e-61 206.0 0.2 1.1e-60 204.1 0.0 1.8 2 0 0 2 2 2 1 RIO1 family APH PF01636.18 gi|257386766|ref|YP_003176539.1| - 7.3e-08 32.4 0.2 4e-05 23.4 0.0 2.3 1 1 1 2 2 2 2 Phosphotransferase enzyme family Kdo PF06293.9 gi|257386766|ref|YP_003176539.1| - 1.8e-06 27.1 0.1 6.1e-06 25.4 0.1 1.8 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase PF00069.20 gi|257386766|ref|YP_003176539.1| - 0.00069 18.8 0.0 0.0011 18.1 0.0 1.3 1 0 0 1 1 1 1 Protein kinase domain WaaY PF06176.6 gi|257386766|ref|YP_003176539.1| - 0.0025 17.0 0.0 0.0046 16.2 0.0 1.4 1 0 0 1 1 1 1 Lipopolysaccharide core biosynthesis protein (WaaY) DNA_gyraseA_C PF03989.8 gi|257386766|ref|YP_003176539.1| - 0.054 12.8 0.0 8 5.8 0.0 2.5 2 0 0 2 2 2 0 DNA gyrase C-terminal domain, beta-propeller eIF-1a PF01176.14 gi|257386767|ref|YP_003176540.1| - 3.1e-28 96.9 0.8 4.1e-28 96.5 0.5 1.2 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 SCP2 PF02036.12 gi|257386768|ref|YP_003176541.1| - 1.1e-10 41.7 0.0 1.4e-10 41.4 0.0 1.1 1 0 0 1 1 1 1 SCP-2 sterol transfer family MscS_TM PF12794.2 gi|257386770|ref|YP_003176543.1| - 0.23 10.0 3.9 0.24 9.9 2.7 1.0 1 0 0 1 1 1 0 Mechanosensitive ion channel inner membrane domain 1 DUF4418 PF14387.1 gi|257386770|ref|YP_003176543.1| - 0.38 10.5 5.9 0.4 10.4 4.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4418) DUF3040 PF11239.3 gi|257386770|ref|YP_003176543.1| - 0.82 9.7 15.2 0.34 10.9 4.4 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3040) DUF726 PF05277.7 gi|257386770|ref|YP_003176543.1| - 4 6.2 7.0 4 6.2 4.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF726) Acyl-CoA_dh_N PF02771.11 gi|257386770|ref|YP_003176543.1| - 4.7 7.8 5.2 5.2 7.6 3.6 1.1 1 0 0 1 1 1 0 Acyl-CoA dehydrogenase, N-terminal domain DUF460 PF04312.8 gi|257386771|ref|YP_003176544.1| - 4.2e-50 168.8 0.4 9.6e-50 167.6 0.3 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF460) Lzipper-MIP1 PF14389.1 gi|257386771|ref|YP_003176544.1| - 0.0014 18.7 9.7 0.17 12.0 2.9 2.6 2 0 0 2 2 2 2 Leucine-zipper of ternary complex factor MIP1 DASH_Spc34 PF08657.5 gi|257386771|ref|YP_003176544.1| - 0.0099 15.5 12.2 0.022 14.4 8.5 1.7 1 0 0 1 1 1 1 DASH complex subunit Spc34 GAS PF13851.1 gi|257386771|ref|YP_003176544.1| - 0.015 14.5 12.7 0.05 12.7 8.8 1.9 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding Atg14 PF10186.4 gi|257386771|ref|YP_003176544.1| - 0.019 13.9 10.3 0.036 13.0 7.1 1.4 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 LMBR1 PF04791.11 gi|257386771|ref|YP_003176544.1| - 0.14 10.7 2.0 0.19 10.2 1.4 1.1 1 0 0 1 1 1 0 LMBR1-like membrane protein BLOC1_2 PF10046.4 gi|257386771|ref|YP_003176544.1| - 0.3 11.2 6.0 1 9.5 0.5 3.2 3 0 0 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 NPV_P10 PF05531.7 gi|257386771|ref|YP_003176544.1| - 0.3 11.3 2.3 28 5.0 0.1 3.8 3 1 1 4 4 4 0 Nucleopolyhedrovirus P10 protein Bap31 PF05529.7 gi|257386771|ref|YP_003176544.1| - 0.43 10.0 9.2 11 5.4 0.0 2.4 2 0 0 2 2 2 0 B-cell receptor-associated protein 31-like IncA PF04156.9 gi|257386771|ref|YP_003176544.1| - 0.83 9.2 22.8 3.4 7.2 15.0 2.3 1 1 1 2 2 2 0 IncA protein APG6 PF04111.7 gi|257386771|ref|YP_003176544.1| - 2 7.3 21.0 0.025 13.6 8.2 2.2 2 0 0 2 2 2 0 Autophagy protein Apg6 AAA_13 PF13166.1 gi|257386771|ref|YP_003176544.1| - 2.4 6.4 9.7 5.1 5.4 6.5 1.4 1 1 0 1 1 1 0 AAA domain ADIP PF11559.3 gi|257386771|ref|YP_003176544.1| - 3.1 7.6 19.6 27 4.6 6.1 2.5 1 1 1 2 2 2 0 Afadin- and alpha -actinin-Binding Exonuc_VII_L PF02601.10 gi|257386771|ref|YP_003176544.1| - 4.9 6.2 9.6 7 5.7 6.2 1.6 1 1 0 1 1 1 0 Exonuclease VII, large subunit Spc7 PF08317.6 gi|257386771|ref|YP_003176544.1| - 5.4 5.5 14.0 3.1 6.3 7.5 1.8 1 1 1 2 2 2 0 Spc7 kinetochore protein DUF1664 PF07889.7 gi|257386771|ref|YP_003176544.1| - 8.1 6.2 6.4 16 5.3 2.3 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) Mnd1 PF03962.10 gi|257386771|ref|YP_003176544.1| - 9.5 5.8 22.4 0.33 10.5 10.2 2.3 2 0 0 2 2 2 0 Mnd1 family MatE PF01554.13 gi|257386772|ref|YP_003176545.1| - 1.3e-60 203.7 31.5 7e-37 126.5 11.6 3.1 4 0 0 4 4 4 2 MatE Polysacc_synt_C PF14667.1 gi|257386772|ref|YP_003176545.1| - 4.2e-07 29.8 11.3 4.2e-07 29.8 7.9 5.4 5 3 0 5 5 5 1 Polysaccharide biosynthesis C-terminal domain OAD_gamma PF04277.8 gi|257386772|ref|YP_003176545.1| - 0.091 13.1 3.4 12 6.3 1.3 3.2 2 0 0 2 2 2 0 Oxaloacetate decarboxylase, gamma chain AsnC_trans_reg PF01037.16 gi|257386773|ref|YP_003176546.1| - 3.6e-13 49.0 0.0 6.8e-13 48.1 0.0 1.5 1 0 0 1 1 1 1 AsnC family HTH_24 PF13412.1 gi|257386773|ref|YP_003176546.1| - 2.8e-11 42.6 0.3 6e-11 41.5 0.1 1.6 2 0 0 2 2 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|257386773|ref|YP_003176546.1| - 7.4e-08 31.9 0.1 1.2e-07 31.2 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_AsnC-type PF13404.1 gi|257386773|ref|YP_003176546.1| - 1.4e-07 30.9 0.2 2.1e-07 30.3 0.1 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_20 PF12840.2 gi|257386773|ref|YP_003176546.1| - 6e-07 29.1 0.0 1.3e-06 28.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|257386773|ref|YP_003176546.1| - 1.4e-06 27.8 0.0 3.3e-06 26.6 0.0 1.6 1 0 0 1 1 1 1 HTH domain HTH_DeoR PF08220.7 gi|257386773|ref|YP_003176546.1| - 2.2e-05 23.8 0.2 5e-05 22.7 0.0 1.6 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_28 PF13518.1 gi|257386773|ref|YP_003176546.1| - 8.6e-05 22.4 0.0 0.00052 19.9 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.14 gi|257386773|ref|YP_003176546.1| - 0.00054 19.6 0.2 0.0014 18.3 0.0 1.7 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_10 PF04967.7 gi|257386773|ref|YP_003176546.1| - 0.00095 18.7 0.1 0.0036 16.8 0.0 1.9 2 0 0 2 2 2 1 HTH DNA binding domain GntR PF00392.16 gi|257386773|ref|YP_003176546.1| - 0.0011 18.3 0.2 0.0028 17.0 0.0 1.7 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_36 PF13730.1 gi|257386773|ref|YP_003176546.1| - 0.0018 18.3 0.0 0.0031 17.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|257386773|ref|YP_003176546.1| - 0.0022 17.5 0.0 0.0039 16.7 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.17 gi|257386773|ref|YP_003176546.1| - 0.0023 17.6 0.0 0.0048 16.5 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|257386773|ref|YP_003176546.1| - 0.0058 16.2 0.0 0.01 15.4 0.0 1.4 1 0 0 1 1 1 1 MarR family Fe_dep_repress PF01325.14 gi|257386773|ref|YP_003176546.1| - 0.0061 16.4 0.1 0.02 14.7 0.0 1.9 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_Crp_2 PF13545.1 gi|257386773|ref|YP_003176546.1| - 0.019 14.7 0.0 0.027 14.2 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_23 PF13384.1 gi|257386773|ref|YP_003176546.1| - 0.028 14.0 0.0 0.076 12.6 0.0 1.7 2 0 0 2 2 2 0 Homeodomain-like domain DUF2042 PF09743.4 gi|257386773|ref|YP_003176546.1| - 0.029 13.6 0.0 0.057 12.7 0.0 1.5 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2042) DUF4250 PF14056.1 gi|257386773|ref|YP_003176546.1| - 0.031 13.9 0.1 0.083 12.6 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4250) HTH_34 PF13601.1 gi|257386773|ref|YP_003176546.1| - 0.042 13.8 0.0 0.086 12.8 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain Rrf2 PF02082.15 gi|257386773|ref|YP_003176546.1| - 0.046 13.8 0.0 0.11 12.6 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator HTH_41 PF14502.1 gi|257386773|ref|YP_003176546.1| - 0.051 13.1 0.0 0.11 12.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.1 gi|257386773|ref|YP_003176546.1| - 0.061 12.5 0.0 0.13 11.4 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_29 PF13551.1 gi|257386773|ref|YP_003176546.1| - 0.069 13.2 0.0 0.17 12.0 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn helix Mga PF05043.8 gi|257386773|ref|YP_003176546.1| - 0.073 13.3 0.0 0.24 11.7 0.0 1.8 2 0 0 2 2 1 0 Mga helix-turn-helix domain HTH_40 PF14493.1 gi|257386773|ref|YP_003176546.1| - 0.093 12.9 0.0 0.21 11.8 0.0 1.6 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_38 PF13936.1 gi|257386773|ref|YP_003176546.1| - 0.1 12.1 0.0 0.22 11.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain DUF742 PF05331.6 gi|257386773|ref|YP_003176546.1| - 0.12 11.9 0.0 0.3 10.6 0.0 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF742) Gln-synt_C PF00120.19 gi|257386774|ref|YP_003176547.1| - 1.3e-104 348.9 0.0 4e-104 347.3 0.1 1.6 2 0 0 2 2 2 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.14 gi|257386774|ref|YP_003176547.1| - 1.3e-29 101.5 1.0 7.2e-29 99.1 0.0 2.3 2 0 0 2 2 2 1 Glutamine synthetase, beta-Grasp domain PAP2 PF01569.16 gi|257386775|ref|YP_003176548.1| - 2.8e-16 59.3 6.7 2.8e-16 59.3 4.6 2.6 3 0 0 3 3 3 1 PAP2 superfamily PAP2_3 PF14378.1 gi|257386775|ref|YP_003176548.1| - 2.5e-05 23.9 3.7 2.5e-05 23.9 2.6 2.0 1 1 1 2 2 2 1 PAP2 superfamily BEX PF04538.7 gi|257386776|ref|YP_003176549.1| - 0.045 13.9 2.3 0.068 13.3 1.6 1.3 1 0 0 1 1 1 0 Brain expressed X-linked like family DUF2613 PF11021.3 gi|257386776|ref|YP_003176549.1| - 2.1 8.1 8.2 1.3 8.7 0.2 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2613) DUF4131 PF13567.1 gi|257386777|ref|YP_003176550.1| - 0.23 10.8 2.0 0.24 10.8 0.7 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) DUF1212 PF06738.7 gi|257386777|ref|YP_003176550.1| - 0.74 9.2 3.4 1.5 8.2 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1212) DUF4231 PF14015.1 gi|257386777|ref|YP_003176550.1| - 3.2 7.7 5.0 14 5.7 3.3 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF4231) TRM PF02005.11 gi|257386778|ref|YP_003176551.1| - 2.2e-87 293.4 0.0 2.7e-87 293.1 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase Methyltransf_26 PF13659.1 gi|257386778|ref|YP_003176551.1| - 1.7e-06 28.0 1.6 4.5e-06 26.6 1.1 2.0 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|257386778|ref|YP_003176551.1| - 1.3e-05 24.6 0.0 3.4e-05 23.2 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase small domain Cons_hypoth95 PF03602.10 gi|257386778|ref|YP_003176551.1| - 0.0035 16.7 0.0 0.0054 16.1 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Zn-ribbon_8 PF09723.5 gi|257386778|ref|YP_003176551.1| - 0.018 14.9 1.1 0.045 13.7 0.8 1.7 1 0 0 1 1 1 0 Zinc ribbon domain zf-C3HC4_2 PF13923.1 gi|257386778|ref|YP_003176551.1| - 0.031 14.3 0.4 0.072 13.1 0.3 1.6 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Methyltransf_31 PF13847.1 gi|257386778|ref|YP_003176551.1| - 0.08 12.5 0.0 0.13 11.8 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain zf-C3HC4_3 PF13920.1 gi|257386778|ref|YP_003176551.1| - 0.11 12.2 0.7 0.21 11.2 0.5 1.5 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) PrmA PF06325.8 gi|257386778|ref|YP_003176551.1| - 0.17 11.0 0.0 0.26 10.3 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) zinc_ribbon_2 PF13240.1 gi|257386778|ref|YP_003176551.1| - 2.7 7.6 8.0 0.27 10.7 0.8 2.6 3 0 0 3 3 3 0 zinc-ribbon domain SWIM PF04434.12 gi|257386779|ref|YP_003176552.1| - 0.014 14.8 1.6 0.042 13.3 1.1 1.7 1 1 0 1 1 1 0 SWIM zinc finger HATPase_c PF02518.21 gi|257386780|ref|YP_003176553.1| - 2.1e-10 40.3 0.0 1.7e-08 34.1 0.0 2.3 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|257386780|ref|YP_003176553.1| - 8.5e-06 25.6 0.2 2.1e-05 24.4 0.1 1.7 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.5 gi|257386780|ref|YP_003176553.1| - 1.4e-05 25.0 0.5 0.00012 22.0 0.3 2.4 1 1 0 1 1 1 1 PAS fold PAS PF00989.19 gi|257386780|ref|YP_003176553.1| - 0.00011 21.9 0.1 0.00062 19.5 0.0 2.2 1 1 0 1 1 1 1 PAS fold HATPase_c_2 PF13581.1 gi|257386780|ref|YP_003176553.1| - 0.00037 20.2 0.2 0.0018 18.0 0.1 2.1 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain PAS_8 PF13188.1 gi|257386780|ref|YP_003176553.1| - 0.087 12.7 0.0 0.27 11.1 0.0 1.9 1 0 0 1 1 1 0 PAS domain GATase PF00117.23 gi|257386781|ref|YP_003176554.1| - 4.6e-30 104.5 0.0 6.1e-30 104.1 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.9 gi|257386781|ref|YP_003176554.1| - 1.5e-09 37.6 0.2 1.3e-08 34.5 0.1 2.0 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain SNO PF01174.14 gi|257386781|ref|YP_003176554.1| - 7.8e-07 28.8 0.0 0.012 15.2 0.0 2.1 2 0 0 2 2 2 2 SNO glutamine amidotransferase family Peptidase_C26 PF07722.8 gi|257386781|ref|YP_003176554.1| - 2.2e-06 27.2 0.2 3.1e-05 23.5 0.1 2.2 1 1 0 1 1 1 1 Peptidase C26 DJ-1_PfpI PF01965.19 gi|257386781|ref|YP_003176554.1| - 0.0069 15.8 0.0 0.011 15.1 0.0 1.3 1 0 0 1 1 1 1 DJ-1/PfpI family UDG PF03167.14 gi|257386782|ref|YP_003176555.1| - 5.8e-37 126.4 0.0 7.3e-37 126.1 0.0 1.0 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily DUF3592 PF12158.3 gi|257386783|ref|YP_003176556.1| - 7.9e-13 48.4 0.1 9.4e-13 48.1 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3592) DUF202 PF02656.10 gi|257386783|ref|YP_003176556.1| - 0.078 13.2 0.5 1.3 9.2 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF202) zf-DHHC PF01529.15 gi|257386784|ref|YP_003176557.1| - 0.00065 19.1 2.0 0.0007 19.0 1.4 1.0 1 0 0 1 1 1 1 DHHC palmitoyltransferase DZR PF12773.2 gi|257386784|ref|YP_003176557.1| - 0.0012 18.6 1.6 0.0014 18.4 1.1 1.2 1 0 0 1 1 1 1 Double zinc ribbon Ribosomal_L40e PF01020.12 gi|257386784|ref|YP_003176557.1| - 0.0044 16.5 8.3 0.0064 16.0 5.7 1.4 1 1 0 1 1 1 1 Ribosomal L40e family zinc_ribbon_2 PF13240.1 gi|257386784|ref|YP_003176557.1| - 0.027 13.9 1.3 0.041 13.3 0.9 1.3 1 0 0 1 1 1 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|257386784|ref|YP_003176557.1| - 0.034 13.3 2.0 0.044 12.9 1.4 1.2 1 0 0 1 1 1 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|257386784|ref|YP_003176557.1| - 0.063 12.9 1.1 0.073 12.7 0.7 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain DNA_RNApol_7kD PF03604.8 gi|257386784|ref|YP_003176557.1| - 0.069 12.6 6.2 0.13 11.7 4.3 1.4 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit DnaJ_CXXCXGXG PF00684.14 gi|257386784|ref|YP_003176557.1| - 0.084 12.9 1.9 0.089 12.8 1.3 1.1 1 0 0 1 1 1 0 DnaJ central domain zf-RanBP PF00641.13 gi|257386784|ref|YP_003176557.1| - 0.11 11.6 2.7 0.15 11.1 1.9 1.3 1 0 0 1 1 1 0 Zn-finger in Ran binding protein and others Zn_Tnp_IS1595 PF12760.2 gi|257386784|ref|YP_003176557.1| - 0.41 10.5 3.9 1.9 8.3 2.8 1.9 1 1 1 2 2 2 0 Transposase zinc-ribbon domain RNA_POL_M_15KD PF02150.11 gi|257386784|ref|YP_003176557.1| - 0.48 10.1 5.6 7.3 6.3 3.9 2.1 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit QCR10 PF09796.4 gi|257386785|ref|YP_003176558.1| - 4.4 7.0 6.2 0.23 11.1 0.5 1.7 2 0 0 2 2 2 0 Ubiquinol-cytochrome-c reductase complex subunit (QCR10) DUF4191 PF13829.1 gi|257386785|ref|YP_003176558.1| - 4.6 6.2 5.8 3.2 6.8 2.9 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4191) TBP PF00352.16 gi|257386786|ref|YP_003176559.1| - 3.5e-65 215.3 0.0 2.1e-31 107.1 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) DUF3378 PF11858.3 gi|257386786|ref|YP_003176559.1| - 0.015 15.3 0.0 2.3 8.3 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF3378) CENP-F_C_Rb_bdg PF10490.4 gi|257386786|ref|YP_003176559.1| - 0.035 13.4 0.6 8.8 5.7 0.0 2.3 2 0 0 2 2 2 0 Rb-binding domain of kinetochore protein Cenp-F/LEK1 DUF3773 PF12608.3 gi|257386786|ref|YP_003176559.1| - 0.11 12.4 0.0 0.32 11.0 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3773) UPF0020 PF01170.13 gi|257386787|ref|YP_003176560.1| - 1.4e-30 106.2 0.0 1.9e-30 105.7 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_26 PF13659.1 gi|257386787|ref|YP_003176560.1| - 5.6e-13 48.9 1.8 5.6e-13 48.9 1.2 2.2 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|257386787|ref|YP_003176560.1| - 4.7e-07 30.3 0.3 1.2e-06 29.0 0.2 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|257386787|ref|YP_003176560.1| - 1e-06 29.1 0.2 2.9e-06 27.6 0.1 1.9 1 1 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|257386787|ref|YP_003176560.1| - 1.3e-06 27.8 0.0 5.9e-06 25.8 0.0 1.9 2 0 0 2 2 2 1 Conserved hypothetical protein 95 Methyltransf_31 PF13847.1 gi|257386787|ref|YP_003176560.1| - 1.7e-06 27.6 0.0 2.4e-06 27.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|257386787|ref|YP_003176560.1| - 0.00015 22.0 0.2 0.0005 20.3 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.9 gi|257386787|ref|YP_003176560.1| - 0.0035 16.7 0.1 0.01 15.2 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase small domain THUMP PF02926.12 gi|257386787|ref|YP_003176560.1| - 0.0043 16.9 0.0 0.0078 16.0 0.0 1.4 1 0 0 1 1 1 1 THUMP domain Ubie_methyltran PF01209.13 gi|257386787|ref|YP_003176560.1| - 0.0081 15.2 0.0 0.015 14.4 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_15 PF09445.5 gi|257386787|ref|YP_003176560.1| - 0.018 14.6 0.0 0.025 14.1 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltransf_23 PF13489.1 gi|257386787|ref|YP_003176560.1| - 0.019 14.6 0.1 0.14 11.8 0.0 2.3 2 1 1 3 3 3 0 Methyltransferase domain N6_Mtase PF02384.11 gi|257386787|ref|YP_003176560.1| - 0.039 13.0 0.0 0.071 12.1 0.0 1.5 1 1 0 1 1 1 0 N-6 DNA Methylase Tic20 PF09685.5 gi|257386788|ref|YP_003176561.1| - 0.044 13.7 8.4 0.058 13.3 5.9 1.1 1 0 0 1 1 1 0 Tic20-like protein Fst_toxin PF13955.1 gi|257386788|ref|YP_003176561.1| - 0.11 12.1 1.9 0.29 10.8 1.3 1.7 1 0 0 1 1 1 0 Toxin Fst, type I toxin-antitoxin system Fumarate_red_D PF02313.12 gi|257386788|ref|YP_003176561.1| - 0.6 10.0 5.4 0.84 9.5 3.8 1.4 1 0 0 1 1 1 0 Fumarate reductase subunit D HypA PF01155.14 gi|257386790|ref|YP_003176563.1| - 0.0082 15.8 1.5 0.0087 15.7 1.0 1.0 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family zf-IS66 PF13005.2 gi|257386790|ref|YP_003176563.1| - 0.022 14.7 5.0 0.25 11.3 0.3 2.1 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 zinc-ribbons_6 PF07191.7 gi|257386790|ref|YP_003176563.1| - 0.064 13.0 0.5 0.075 12.8 0.4 1.1 1 0 0 1 1 1 0 zinc-ribbons DZR PF12773.2 gi|257386790|ref|YP_003176563.1| - 0.068 12.9 1.1 0.087 12.6 0.8 1.3 1 0 0 1 1 1 0 Double zinc ribbon Zn-ribbon_8 PF09723.5 gi|257386790|ref|YP_003176563.1| - 0.13 12.2 5.6 0.4 10.6 3.8 1.8 1 1 0 1 1 1 0 Zinc ribbon domain C1_3 PF07649.7 gi|257386790|ref|YP_003176563.1| - 0.91 9.6 3.7 1.1 9.4 0.3 2.0 2 0 0 2 2 2 0 C1-like domain DUF359 PF04019.7 gi|257386791|ref|YP_003176564.1| - 1.2e-35 121.5 0.0 1.4e-35 121.2 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF359) HisKA PF00512.20 gi|257386791|ref|YP_003176564.1| - 0.022 14.7 0.1 0.055 13.4 0.0 1.7 2 1 0 2 2 2 0 His Kinase A (phospho-acceptor) domain Secretin_N PF03958.12 gi|257386791|ref|YP_003176564.1| - 0.095 12.8 0.0 0.14 12.3 0.0 1.4 1 0 0 1 1 1 0 Bacterial type II/III secretion system short domain Spt4 PF06093.8 gi|257386792|ref|YP_003176565.1| - 6.9e-14 51.4 0.3 8e-14 51.2 0.2 1.1 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger NOB1_Zn_bind PF08772.6 gi|257386792|ref|YP_003176565.1| - 0.049 13.4 0.3 0.053 13.3 0.2 1.3 1 1 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like DZR PF12773.2 gi|257386792|ref|YP_003176565.1| - 0.09 12.6 0.6 0.13 12.1 0.5 1.2 1 0 0 1 1 1 0 Double zinc ribbon zf-CHY PF05495.7 gi|257386792|ref|YP_003176565.1| - 0.16 12.1 1.3 0.23 11.6 0.9 1.3 1 0 0 1 1 1 0 CHY zinc finger HypA PF01155.14 gi|257386792|ref|YP_003176565.1| - 0.21 11.2 2.4 0.21 11.3 1.5 1.3 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family ADK_lid PF05191.9 gi|257386792|ref|YP_003176565.1| - 0.21 11.2 3.2 1.8 8.2 2.2 2.0 1 1 0 1 1 1 0 Adenylate kinase, active site lid Nudix_N_2 PF14803.1 gi|257386792|ref|YP_003176565.1| - 0.86 9.3 5.1 0.77 9.4 0.8 2.1 2 0 0 2 2 2 0 Nudix N-terminal SHS2_Rpb7-N PF03876.12 gi|257386793|ref|YP_003176566.1| - 5.7e-16 58.4 0.0 9e-16 57.7 0.0 1.3 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.18 gi|257386793|ref|YP_003176566.1| - 1.1e-13 51.0 0.1 2.3e-13 50.0 0.1 1.5 1 0 0 1 1 1 1 S1 RNA binding domain Fcf1 PF04900.7 gi|257386794|ref|YP_003176567.1| - 3.9e-07 30.0 0.0 5e-07 29.7 0.0 1.1 1 0 0 1 1 1 1 Fcf1 DUF188 PF02639.9 gi|257386794|ref|YP_003176567.1| - 1.9e-06 27.3 0.7 2.8e-06 26.8 0.5 1.3 1 0 0 1 1 1 1 Uncharacterized BCR, YaiI/YqxD family COG1671 PIN_4 PF13638.1 gi|257386794|ref|YP_003176567.1| - 8.1e-05 22.7 0.0 9.4e-05 22.5 0.0 1.2 1 0 0 1 1 1 1 PIN domain GTP_EFTU PF00009.22 gi|257386795|ref|YP_003176568.1| - 1.8e-41 141.6 0.1 2.5e-41 141.1 0.1 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain eIF2_C PF09173.6 gi|257386795|ref|YP_003176568.1| - 1.9e-26 91.9 0.0 3.7e-26 90.9 0.0 1.5 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU_D2 PF03144.20 gi|257386795|ref|YP_003176568.1| - 3.6e-05 23.7 0.5 0.00011 22.2 0.3 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 2 PduV-EutP PF10662.4 gi|257386795|ref|YP_003176568.1| - 0.0017 17.8 0.5 0.051 13.0 0.0 2.2 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation MMR_HSR1 PF01926.18 gi|257386795|ref|YP_003176568.1| - 0.002 18.0 0.0 0.0042 17.0 0.0 1.5 1 1 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.13 gi|257386795|ref|YP_003176568.1| - 0.04 13.1 0.2 6.5 6.0 0.0 2.4 2 0 0 2 2 2 0 Ferrous iron transport protein B SRPRB PF09439.5 gi|257386795|ref|YP_003176568.1| - 0.047 12.8 0.1 1.6 7.9 0.0 2.1 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit Miro PF08477.8 gi|257386795|ref|YP_003176568.1| - 0.085 13.3 0.0 0.34 11.4 0.0 1.9 1 1 0 1 1 1 0 Miro-like protein Dynamin_N PF00350.18 gi|257386795|ref|YP_003176568.1| - 0.12 12.1 0.1 0.77 9.5 0.0 2.2 1 1 0 2 2 2 0 Dynamin family Response_reg PF00072.19 gi|257386796|ref|YP_003176569.1| - 1.1e-16 60.7 0.3 1.3e-16 60.5 0.2 1.1 1 0 0 1 1 1 1 Response regulator receiver domain PhoU PF01895.14 gi|257386796|ref|YP_003176569.1| - 0.0087 16.4 0.4 0.11 12.9 0.1 2.1 2 0 0 2 2 2 1 PhoU domain DUF418 PF04235.7 gi|257386798|ref|YP_003176571.1| - 3.2e-45 153.7 15.9 3.2e-45 153.7 11.0 2.6 2 1 1 3 3 3 1 Protein of unknown function (DUF418) Lactamase_B_2 PF12706.2 gi|257386799|ref|YP_003176572.1| - 9.4e-18 64.4 0.3 1.3e-17 63.9 0.2 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|257386799|ref|YP_003176572.1| - 8.3e-09 35.3 5.7 1.3e-08 34.7 3.9 1.5 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily AAA PF00004.24 gi|257386800|ref|YP_003176573.1| - 3.2e-39 134.1 0.0 6.9e-39 133.0 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|257386800|ref|YP_003176573.1| - 1.4e-07 32.3 1.8 9e-07 29.7 0.0 3.0 2 1 1 3 3 3 1 AAA domain AAA_5 PF07728.9 gi|257386800|ref|YP_003176573.1| - 5e-06 26.2 0.1 4.5e-05 23.2 0.0 2.6 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_33 PF13671.1 gi|257386800|ref|YP_003176573.1| - 2.5e-05 24.2 0.5 0.0001 22.2 0.0 2.4 3 2 0 3 3 2 1 AAA domain AAA_18 PF13238.1 gi|257386800|ref|YP_003176573.1| - 2.8e-05 24.4 0.1 0.00076 19.7 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|257386800|ref|YP_003176573.1| - 5.6e-05 23.1 5.6 0.001 19.1 1.2 3.7 1 1 1 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|257386800|ref|YP_003176573.1| - 0.00011 22.3 0.2 0.0032 17.5 0.0 2.8 2 1 0 2 2 2 1 AAA domain AAA_28 PF13521.1 gi|257386800|ref|YP_003176573.1| - 0.00081 19.3 4.2 0.0029 17.6 0.0 2.9 3 1 0 3 3 2 1 AAA domain AAA_2 PF07724.9 gi|257386800|ref|YP_003176573.1| - 0.00088 19.2 0.7 0.0019 18.1 0.0 1.9 2 0 0 2 2 1 1 AAA domain (Cdc48 subfamily) TIP49 PF06068.8 gi|257386800|ref|YP_003176573.1| - 0.001 17.9 0.0 0.0029 16.3 0.0 1.7 2 0 0 2 2 2 1 TIP49 C-terminus MMR_HSR1 PF01926.18 gi|257386800|ref|YP_003176573.1| - 0.0015 18.4 0.0 0.0031 17.4 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase RuvB_N PF05496.7 gi|257386800|ref|YP_003176573.1| - 0.0018 17.3 0.0 0.0036 16.3 0.0 1.6 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_25 PF13481.1 gi|257386800|ref|YP_003176573.1| - 0.0027 17.1 0.8 0.02 14.3 0.0 2.4 2 1 0 2 2 2 1 AAA domain SKI PF01202.17 gi|257386800|ref|YP_003176573.1| - 0.0038 17.1 0.0 0.01 15.7 0.0 1.8 1 0 0 1 1 1 1 Shikimate kinase IstB_IS21 PF01695.12 gi|257386800|ref|YP_003176573.1| - 0.0045 16.4 0.1 0.018 14.4 0.0 1.9 1 1 0 1 1 1 1 IstB-like ATP binding protein Cytidylate_kin2 PF13189.1 gi|257386800|ref|YP_003176573.1| - 0.0049 16.7 0.1 0.016 15.1 0.0 1.8 2 0 0 2 2 2 1 Cytidylate kinase-like family AAA_19 PF13245.1 gi|257386800|ref|YP_003176573.1| - 0.0054 16.4 0.0 0.015 15.0 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain DUF815 PF05673.8 gi|257386800|ref|YP_003176573.1| - 0.0079 15.1 0.0 0.014 14.3 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_3 PF07726.6 gi|257386800|ref|YP_003176573.1| - 0.009 15.6 0.3 0.03 13.9 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.16 gi|257386800|ref|YP_003176573.1| - 0.01 15.0 0.0 0.019 14.1 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Sigma54_activ_2 PF14532.1 gi|257386800|ref|YP_003176573.1| - 0.018 15.0 0.0 0.051 13.6 0.0 1.8 2 0 0 2 2 1 0 Sigma-54 interaction domain NACHT PF05729.7 gi|257386800|ref|YP_003176573.1| - 0.022 14.4 0.2 2.1 8.0 0.0 2.7 2 1 0 3 3 3 0 NACHT domain ResIII PF04851.10 gi|257386800|ref|YP_003176573.1| - 0.022 14.5 0.0 0.036 13.8 0.0 1.4 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit Zeta_toxin PF06414.7 gi|257386800|ref|YP_003176573.1| - 0.029 13.4 0.0 0.07 12.2 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin ABC_tran PF00005.22 gi|257386800|ref|YP_003176573.1| - 0.032 14.5 0.0 0.11 12.8 0.0 1.8 1 1 0 1 1 1 0 ABC transporter RNA_helicase PF00910.17 gi|257386800|ref|YP_003176573.1| - 0.032 14.3 0.0 0.059 13.5 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_14 PF13173.1 gi|257386800|ref|YP_003176573.1| - 0.035 13.9 0.0 0.095 12.5 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_11 PF13086.1 gi|257386800|ref|YP_003176573.1| - 0.045 13.3 0.0 0.086 12.3 0.0 1.6 1 1 0 1 1 1 0 AAA domain KTI12 PF08433.5 gi|257386800|ref|YP_003176573.1| - 0.13 11.4 0.0 0.32 10.1 0.0 1.6 1 0 0 1 1 1 0 Chromatin associated protein KTI12 Thiolase_N PF00108.18 gi|257386801|ref|YP_003176574.1| - 4.8e-78 261.7 0.8 8.5e-78 260.9 0.6 1.4 1 1 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.13 gi|257386801|ref|YP_003176574.1| - 3.8e-42 142.5 0.0 9.8e-42 141.2 0.0 1.7 1 0 0 1 1 1 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.21 gi|257386801|ref|YP_003176574.1| - 1.4e-05 24.6 1.2 2.9e-05 23.6 0.8 1.5 1 0 0 1 1 1 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.5 gi|257386801|ref|YP_003176574.1| - 0.0082 15.7 2.3 0.07 12.8 0.2 2.3 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 4HBT PF03061.17 gi|257386802|ref|YP_003176575.1| - 2.3e-14 53.2 0.3 3.9e-14 52.5 0.2 1.3 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.1 gi|257386802|ref|YP_003176575.1| - 2.8e-09 37.0 0.0 4.1e-09 36.5 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) 4HBT_3 PF13622.1 gi|257386802|ref|YP_003176575.1| - 1e-05 25.4 0.2 1.2e-05 25.2 0.2 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily HTH_20 PF12840.2 gi|257386803|ref|YP_003176576.1| - 1.1e-12 47.5 1.5 2.8e-12 46.2 0.1 2.4 3 0 0 3 3 3 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|257386803|ref|YP_003176576.1| - 6.6e-06 25.7 0.1 1.7e-05 24.4 0.1 1.7 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|257386803|ref|YP_003176576.1| - 0.044 13.1 0.0 0.083 12.2 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding TrkA_N PF02254.13 gi|257386804|ref|YP_003176577.1| - 3.1e-32 111.0 1.7 6.1e-32 110.0 1.2 1.5 1 0 0 1 1 1 1 TrkA-N domain Na_H_Exchanger PF00999.16 gi|257386804|ref|YP_003176577.1| - 1.8e-31 109.0 41.6 2.4e-31 108.6 28.8 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_C PF02080.16 gi|257386804|ref|YP_003176577.1| - 1.3e-10 40.7 0.6 7.9e-09 34.9 0.0 2.7 2 0 0 2 2 2 1 TrkA-C domain NAD_binding_7 PF13241.1 gi|257386804|ref|YP_003176577.1| - 3.4e-07 30.4 0.7 7.6e-07 29.3 0.2 1.8 2 0 0 2 2 1 1 Putative NAD(P)-binding F420_oxidored PF03807.12 gi|257386804|ref|YP_003176577.1| - 1.7e-05 25.1 1.5 0.0016 18.8 0.4 2.8 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent FAD_binding_3 PF01494.14 gi|257386804|ref|YP_003176577.1| - 0.00051 19.2 0.0 0.00069 18.7 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain DAO PF01266.19 gi|257386804|ref|YP_003176577.1| - 0.00052 19.0 0.2 0.0008 18.4 0.1 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_Gly3P_dh_N PF01210.18 gi|257386804|ref|YP_003176577.1| - 0.002 17.8 0.2 0.0063 16.2 0.1 1.8 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_10 PF13460.1 gi|257386804|ref|YP_003176577.1| - 0.0021 18.0 0.9 0.0056 16.7 0.6 1.7 1 0 0 1 1 1 1 NADH(P)-binding UDPG_MGDP_dh_N PF03721.9 gi|257386804|ref|YP_003176577.1| - 0.0051 16.2 0.1 0.0087 15.4 0.1 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Thi4 PF01946.12 gi|257386804|ref|YP_003176577.1| - 0.0052 15.9 0.1 0.011 14.8 0.1 1.4 1 0 0 1 1 1 1 Thi4 family NAD_binding_8 PF13450.1 gi|257386804|ref|YP_003176577.1| - 0.0073 16.3 0.1 0.026 14.5 0.1 2.0 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.22 gi|257386804|ref|YP_003176577.1| - 0.0076 16.6 0.4 0.023 15.0 0.3 1.8 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Saccharop_dh PF03435.13 gi|257386804|ref|YP_003176577.1| - 0.01 14.8 0.9 0.033 13.1 0.2 1.9 2 0 0 2 2 2 0 Saccharopine dehydrogenase IlvN PF07991.7 gi|257386804|ref|YP_003176577.1| - 0.012 15.0 0.2 0.022 14.1 0.1 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain Pyr_redox_2 PF07992.9 gi|257386804|ref|YP_003176577.1| - 0.013 15.4 0.1 0.023 14.5 0.1 1.5 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_2 PF03446.10 gi|257386804|ref|YP_003176577.1| - 0.016 15.0 0.0 0.03 14.1 0.0 1.5 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.11 gi|257386804|ref|YP_003176577.1| - 0.018 14.4 0.1 0.037 13.4 0.1 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.13 gi|257386804|ref|YP_003176577.1| - 0.029 14.0 0.4 0.057 13.0 0.3 1.6 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Lycopene_cycl PF05834.7 gi|257386804|ref|YP_003176577.1| - 0.036 12.9 0.0 0.052 12.4 0.0 1.2 1 0 0 1 1 1 0 Lycopene cyclase protein HI0933_like PF03486.9 gi|257386804|ref|YP_003176577.1| - 0.052 11.9 0.1 0.086 11.2 0.1 1.3 1 0 0 1 1 1 0 HI0933-like protein 2-Hacid_dh_C PF02826.14 gi|257386804|ref|YP_003176577.1| - 0.054 12.6 0.1 0.11 11.6 0.1 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Epimerase PF01370.16 gi|257386804|ref|YP_003176577.1| - 0.12 11.7 0.1 0.19 11.1 0.1 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family Lactamase_B PF00753.22 gi|257386805|ref|YP_003176578.1| - 1.3e-23 83.7 8.4 1.8e-23 83.1 5.8 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|257386805|ref|YP_003176578.1| - 6e-05 22.6 0.1 0.00012 21.7 0.1 1.7 1 1 0 1 1 1 1 Beta-lactamase superfamily domain peroxidase PF00141.18 gi|257386806|ref|YP_003176579.1| - 2.2e-93 312.0 0.0 4.6e-52 176.7 0.0 2.2 2 0 0 2 2 2 2 Peroxidase DUF4578 PF15147.1 gi|257386806|ref|YP_003176579.1| - 0.14 12.5 0.0 0.24 11.7 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4578) RNHCP PF12647.2 gi|257386807|ref|YP_003176580.1| - 0.0094 15.7 0.6 0.0094 15.7 0.4 2.1 2 1 1 3 3 3 1 RNHCP domain DZR PF12773.2 gi|257386807|ref|YP_003176580.1| - 0.011 15.5 8.9 0.88 9.4 6.2 2.8 1 1 0 1 1 1 0 Double zinc ribbon DUF3939 PF13075.1 gi|257386807|ref|YP_003176580.1| - 0.092 12.4 0.0 0.12 12.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3939) zf-piccolo PF05715.8 gi|257386807|ref|YP_003176580.1| - 0.19 11.7 4.8 4 7.5 0.2 2.8 3 0 0 3 3 3 0 Piccolo Zn-finger IBR PF01485.16 gi|257386807|ref|YP_003176580.1| - 1.1 9.2 4.2 18 5.2 2.9 2.2 1 1 0 1 1 1 0 IBR domain DUF1272 PF06906.6 gi|257386807|ref|YP_003176580.1| - 1.5 8.7 9.5 0.51 10.2 1.1 2.8 2 1 1 3 3 3 0 Protein of unknown function (DUF1272) zf-C3HC4_3 PF13920.1 gi|257386807|ref|YP_003176580.1| - 3.1 7.5 8.6 9.4 5.9 3.1 2.7 1 1 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) zf-RING_3 PF14369.1 gi|257386807|ref|YP_003176580.1| - 3.7 7.6 16.7 1.9 8.5 3.2 3.5 2 1 1 3 3 3 0 zinc-finger zf-ribbon_3 PF13248.1 gi|257386807|ref|YP_003176580.1| - 3.8 6.8 9.6 15 4.9 0.1 3.6 3 1 2 5 5 5 0 zinc-ribbon domain HypA PF01155.14 gi|257386807|ref|YP_003176580.1| - 3.8 7.2 6.0 10 5.8 4.1 1.8 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family TF_Zn_Ribbon PF08271.7 gi|257386807|ref|YP_003176580.1| - 4 6.8 12.8 13 5.2 3.0 3.6 2 1 1 3 3 3 0 TFIIB zinc-binding Zn-ribbon_8 PF09723.5 gi|257386807|ref|YP_003176580.1| - 5.4 7.0 10.2 0.73 9.8 1.4 3.0 2 1 2 4 4 4 0 Zinc ribbon domain Fer4_3 PF12798.2 gi|257386807|ref|YP_003176580.1| - 6.4 7.5 7.7 72 4.3 0.3 3.6 2 1 1 3 3 3 0 4Fe-4S binding domain zf-RING_4 PF14570.1 gi|257386807|ref|YP_003176580.1| - 8.5 6.0 10.9 74 3.0 5.1 2.9 2 1 0 2 2 2 0 RING/Ubox like zinc-binding domain Abhydrolase_6 PF12697.2 gi|257386808|ref|YP_003176581.1| - 2.7e-23 83.0 11.0 3.5e-23 82.7 7.6 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|257386808|ref|YP_003176581.1| - 3.4e-13 49.5 0.0 6.1e-13 48.7 0.0 1.4 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|257386808|ref|YP_003176581.1| - 5.5e-09 35.9 0.0 7.6e-08 32.1 0.0 2.0 2 0 0 2 2 2 1 alpha/beta hydrolase fold Peptidase_S9 PF00326.16 gi|257386808|ref|YP_003176581.1| - 0.0043 16.3 0.0 0.36 10.0 0.0 2.1 2 0 0 2 2 2 1 Prolyl oligopeptidase family DUF1057 PF06342.7 gi|257386808|ref|YP_003176581.1| - 0.0043 15.8 0.0 0.0061 15.4 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase of unknown function (DUF1057) Ser_hydrolase PF06821.8 gi|257386808|ref|YP_003176581.1| - 0.024 14.2 0.0 0.2 11.2 0.0 2.3 3 0 0 3 3 3 0 Serine hydrolase S6PP PF05116.8 gi|257386808|ref|YP_003176581.1| - 0.032 13.5 0.0 0.053 12.8 0.0 1.2 1 0 0 1 1 1 0 Sucrose-6F-phosphate phosphohydrolase Abhydrolase_3 PF07859.8 gi|257386808|ref|YP_003176581.1| - 0.051 13.1 0.0 0.075 12.5 0.0 1.3 1 0 0 1 1 1 0 alpha/beta hydrolase fold DUF2048 PF09752.4 gi|257386808|ref|YP_003176581.1| - 0.1 11.4 0.0 1.1 8.0 0.0 2.0 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2048) tRNA-synt_2b PF00587.20 gi|257386809|ref|YP_003176582.1| - 1.4e-34 119.1 0.0 2.1e-34 118.5 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) Seryl_tRNA_N PF02403.17 gi|257386809|ref|YP_003176582.1| - 2.8e-27 94.8 5.3 4.3e-27 94.2 3.7 1.3 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain TMF_TATA_bd PF12325.3 gi|257386809|ref|YP_003176582.1| - 0.074 12.7 6.9 0.15 11.8 4.8 1.4 1 0 0 1 1 1 0 TATA element modulatory factor 1 TATA binding APG6 PF04111.7 gi|257386809|ref|YP_003176582.1| - 0.3 10.0 4.7 0.49 9.3 3.2 1.2 1 0 0 1 1 1 0 Autophagy protein Apg6 DUF904 PF06005.7 gi|257386809|ref|YP_003176582.1| - 0.81 10.0 7.4 10 6.5 0.3 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF904) Mnd1 PF03962.10 gi|257386809|ref|YP_003176582.1| - 0.86 9.2 4.1 1.5 8.4 2.8 1.3 1 0 0 1 1 1 0 Mnd1 family DUF724 PF05266.9 gi|257386809|ref|YP_003176582.1| - 2.1 7.9 5.2 3.1 7.3 3.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF724) HTH_AsnC-type PF13404.1 gi|257386810|ref|YP_003176583.1| - 1.4e-12 46.8 0.7 3e-12 45.8 0.5 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|257386810|ref|YP_003176583.1| - 6.2e-12 44.7 0.2 9.2e-12 44.1 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.7 gi|257386810|ref|YP_003176583.1| - 8.4e-08 31.7 0.1 1.5e-07 30.9 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.2 gi|257386810|ref|YP_003176583.1| - 2e-05 24.2 0.1 3.5e-05 23.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Fe_dep_repress PF01325.14 gi|257386810|ref|YP_003176583.1| - 0.00026 20.8 0.0 0.0013 18.6 0.0 1.9 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.2 gi|257386810|ref|YP_003176583.1| - 0.0004 19.9 0.0 0.00066 19.3 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|257386810|ref|YP_003176583.1| - 0.00062 19.4 0.0 0.001 18.7 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_DeoR PF08220.7 gi|257386810|ref|YP_003176583.1| - 0.00063 19.2 1.7 0.00068 19.1 0.1 1.9 3 0 0 3 3 3 1 DeoR-like helix-turn-helix domain GntR PF00392.16 gi|257386810|ref|YP_003176583.1| - 0.0056 16.0 0.3 0.014 14.8 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_IclR PF09339.5 gi|257386810|ref|YP_003176583.1| - 0.008 15.7 0.0 0.015 14.8 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain Rrf2 PF02082.15 gi|257386810|ref|YP_003176583.1| - 0.01 15.9 0.0 0.02 15.0 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator Put_DNA-bind_N PF06971.8 gi|257386810|ref|YP_003176583.1| - 0.012 15.4 0.1 0.026 14.2 0.1 1.5 1 0 0 1 1 1 0 Putative DNA-binding protein N-terminus AsnC_trans_reg PF01037.16 gi|257386810|ref|YP_003176583.1| - 0.012 15.3 0.0 0.024 14.3 0.0 1.5 1 0 0 1 1 1 0 AsnC family TrmB PF01978.14 gi|257386810|ref|YP_003176583.1| - 0.017 14.8 0.0 0.028 14.0 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.1 gi|257386810|ref|YP_003176583.1| - 0.018 14.8 0.0 0.034 13.9 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_27 PF13463.1 gi|257386810|ref|YP_003176583.1| - 0.019 15.3 0.0 0.034 14.4 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HrcA_DNA-bdg PF03444.10 gi|257386810|ref|YP_003176583.1| - 0.023 14.1 0.0 0.06 12.7 0.0 1.6 2 0 0 2 2 2 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_23 PF13384.1 gi|257386810|ref|YP_003176583.1| - 0.03 13.9 0.0 0.051 13.2 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain HTH_6 PF01418.12 gi|257386810|ref|YP_003176583.1| - 0.038 13.7 0.0 0.067 12.9 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family DUF2250 PF10007.4 gi|257386810|ref|YP_003176583.1| - 0.046 13.6 0.0 0.084 12.7 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_5 PF01022.15 gi|257386810|ref|YP_003176583.1| - 0.066 12.8 0.0 0.11 12.2 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_30 PF13556.1 gi|257386810|ref|YP_003176583.1| - 0.073 12.6 0.0 0.14 11.7 0.0 1.4 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain MerR PF00376.18 gi|257386810|ref|YP_003176583.1| - 0.074 12.6 0.4 0.5 9.9 0.2 2.3 1 1 0 1 1 1 0 MerR family regulatory protein HTH_36 PF13730.1 gi|257386810|ref|YP_003176583.1| - 0.079 13.0 0.0 0.13 12.4 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_28 PF13518.1 gi|257386810|ref|YP_003176583.1| - 0.11 12.4 0.0 0.19 11.7 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain PaaX PF07848.7 gi|257386810|ref|YP_003176583.1| - 0.14 12.2 0.0 0.26 11.3 0.0 1.5 1 0 0 1 1 1 0 PaaX-like protein LacI PF00356.16 gi|257386810|ref|YP_003176583.1| - 0.16 11.6 0.5 0.33 10.6 0.0 1.7 2 0 0 2 2 2 0 Bacterial regulatory proteins, lacI family AA_permease_2 PF13520.1 gi|257386811|ref|YP_003176584.1| - 7.4e-47 159.8 36.8 9.5e-47 159.4 25.5 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|257386811|ref|YP_003176584.1| - 1.4e-41 142.4 41.8 1.7e-41 142.0 29.0 1.1 1 0 0 1 1 1 1 Amino acid permease Usp PF00582.21 gi|257386811|ref|YP_003176584.1| - 4.6e-11 43.0 3.3 9.4e-11 42.0 2.3 1.5 1 0 0 1 1 1 1 Universal stress protein family Spore_permease PF03845.8 gi|257386811|ref|YP_003176584.1| - 4e-07 28.9 6.8 4e-07 28.9 4.7 2.1 2 0 0 2 2 2 1 Spore germination protein SnoaL_2 PF12680.2 gi|257386812|ref|YP_003176585.1| - 4.3e-13 49.5 1.2 4.8e-13 49.3 0.8 1.0 1 0 0 1 1 1 1 SnoaL-like domain SnoaL_4 PF13577.1 gi|257386812|ref|YP_003176585.1| - 2.2e-08 34.0 0.4 3.7e-08 33.3 0.1 1.4 1 1 0 1 1 1 1 SnoaL-like domain NTF2 PF02136.15 gi|257386812|ref|YP_003176585.1| - 1.7e-06 28.3 0.0 2.2e-06 28.0 0.0 1.1 1 0 0 1 1 1 1 Nuclear transport factor 2 (NTF2) domain SnoaL PF07366.7 gi|257386812|ref|YP_003176585.1| - 4.6e-05 23.0 0.2 0.0001 21.8 0.1 1.7 1 1 0 1 1 1 1 SnoaL-like polyketide cyclase DUF4440 PF14534.1 gi|257386812|ref|YP_003176585.1| - 8.3e-05 22.7 0.3 0.0001 22.4 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4440) SnoaL_3 PF13474.1 gi|257386812|ref|YP_003176585.1| - 0.00034 20.6 0.0 0.00034 20.6 0.0 1.2 1 0 0 1 1 1 1 SnoaL-like domain Lumazine_bd_2 PF12893.2 gi|257386812|ref|YP_003176585.1| - 0.053 14.0 0.0 0.073 13.6 0.0 1.2 1 0 0 1 1 1 0 Putative lumazine-binding AhpC-TSA PF00578.16 gi|257386813|ref|YP_003176586.1| - 3.2e-29 101.1 0.0 4.9e-29 100.5 0.0 1.3 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|257386813|ref|YP_003176586.1| - 3.5e-18 65.5 0.0 6e-18 64.7 0.0 1.3 1 0 0 1 1 1 1 Redoxin DUF899 PF05988.7 gi|257386813|ref|YP_003176586.1| - 0.012 15.1 0.8 0.032 13.6 0.0 1.8 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF899) DUF367 PF04034.8 gi|257386814|ref|YP_003176587.1| - 2.5e-44 149.9 0.0 3e-44 149.6 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF367) RLI PF04068.10 gi|257386814|ref|YP_003176587.1| - 3.3e-05 23.3 0.0 4.7e-05 22.8 0.0 1.3 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI MR_MLE_C PF13378.1 gi|257386815|ref|YP_003176588.1| - 0.0088 16.0 0.0 0.017 15.0 0.0 1.4 1 0 0 1 1 1 1 Enolase C-terminal domain-like Peptidase_M10 PF00413.19 gi|257386816|ref|YP_003176589.1| - 2.9e-05 23.8 0.0 4.9e-05 23.0 0.0 1.5 1 0 0 1 1 1 1 Matrixin Reprolysin_3 PF13582.1 gi|257386816|ref|YP_003176589.1| - 0.0022 18.4 0.7 0.0063 17.0 0.5 2.0 1 1 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_5 PF13688.1 gi|257386816|ref|YP_003176589.1| - 0.053 13.4 0.1 0.12 12.2 0.1 1.6 1 0 0 1 1 1 0 Metallo-peptidase family M12 Reprolysin_4 PF13583.1 gi|257386816|ref|YP_003176589.1| - 0.079 12.4 0.0 0.13 11.7 0.0 1.3 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Reprolysin_2 PF13574.1 gi|257386816|ref|YP_003176589.1| - 0.14 12.2 0.0 0.25 11.3 0.0 1.6 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Pol_alpha_B_N PF08418.5 gi|257386816|ref|YP_003176589.1| - 0.26 10.7 2.6 0.36 10.3 1.8 1.1 1 0 0 1 1 1 0 DNA polymerase alpha subunit B N-terminal TALPID3 PF15324.1 gi|257386816|ref|YP_003176589.1| - 0.49 7.6 12.5 0.66 7.2 8.7 1.0 1 0 0 1 1 1 0 Hedgehog signalling target PRCC PF10253.4 gi|257386816|ref|YP_003176589.1| - 0.71 10.5 4.0 1.1 9.9 2.8 1.2 1 0 0 1 1 1 0 Mitotic checkpoint regulator, MAD2B-interacting Mucin PF01456.12 gi|257386816|ref|YP_003176589.1| - 1.2 8.9 23.3 2 8.1 16.1 1.4 1 0 0 1 1 1 0 Mucin-like glycoprotein HisG PF01634.13 gi|257386817|ref|YP_003176590.1| - 3.6e-49 166.4 0.2 5.8e-49 165.8 0.1 1.3 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.6 gi|257386817|ref|YP_003176590.1| - 2.2e-24 85.2 0.1 4.3e-24 84.2 0.1 1.5 1 0 0 1 1 1 1 HisG, C-terminal domain NMT1 PF09084.6 gi|257386817|ref|YP_003176590.1| - 0.052 13.1 0.0 9.2 5.7 0.0 2.5 1 1 1 2 2 2 0 NMT1/THI5 like HHH_8 PF14716.1 gi|257386818|ref|YP_003176591.1| - 0.15 12.3 7.5 0.92 9.7 0.8 2.4 2 0 0 2 2 2 0 Helix-hairpin-helix domain RP-C PF03428.8 gi|257386818|ref|YP_003176591.1| - 5.8 6.3 8.2 2.4 7.5 1.3 2.7 1 1 2 3 3 3 0 Replication protein C N-terminal domain Amidohydro_1 PF01979.15 gi|257386819|ref|YP_003176592.1| - 2.5e-50 171.9 4.4 3.2e-50 171.6 3.0 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|257386819|ref|YP_003176592.1| - 1.6e-09 38.2 19.5 1.4e-08 35.1 13.5 2.4 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_5 PF13594.1 gi|257386819|ref|YP_003176592.1| - 3.2e-07 30.0 0.2 1.7e-06 27.7 0.0 2.3 2 0 0 2 2 2 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|257386819|ref|YP_003176592.1| - 8.8e-07 28.4 15.0 1.6e-05 24.3 5.7 2.7 1 1 0 1 1 1 1 Amidohydrolase family A_deaminase PF00962.17 gi|257386819|ref|YP_003176592.1| - 1.9e-06 27.0 0.0 4e-06 25.9 0.0 1.4 1 0 0 1 1 1 1 Adenosine/AMP deaminase TatD_DNase PF01026.16 gi|257386819|ref|YP_003176592.1| - 0.0088 15.2 0.0 0.016 14.4 0.0 1.5 1 0 0 1 1 1 1 TatD related DNase MG1 PF11974.3 gi|257386820|ref|YP_003176593.1| - 0.005 17.3 1.3 0.014 15.9 0.9 1.9 1 1 0 1 1 1 1 Alpha-2-macroglobulin MG1 domain Cadherin-like PF12733.2 gi|257386820|ref|YP_003176593.1| - 0.024 14.9 5.1 0.043 14.0 3.5 1.4 1 0 0 1 1 1 0 Cadherin-like beta sandwich domain Pro-rich PF15240.1 gi|257386820|ref|YP_003176593.1| - 0.027 14.5 11.3 0.044 13.8 7.8 1.4 1 0 0 1 1 1 0 Proline-rich CarboxypepD_reg PF13620.1 gi|257386820|ref|YP_003176593.1| - 0.57 10.2 6.9 1.2 9.2 3.9 2.2 1 1 0 1 1 1 0 Carboxypeptidase regulatory-like domain AdoHcyase PF05221.12 gi|257386821|ref|YP_003176594.1| - 2.7e-53 180.6 0.1 3.3e-53 180.3 0.0 1.0 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.16 gi|257386821|ref|YP_003176594.1| - 7.6e-48 162.4 0.5 7.6e-48 162.4 0.3 1.7 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|257386821|ref|YP_003176594.1| - 6.9e-11 41.6 0.1 1.3e-10 40.6 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.7 gi|257386821|ref|YP_003176594.1| - 2.6e-06 26.8 0.5 5.2e-06 25.9 0.2 1.6 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain TrkA_N PF02254.13 gi|257386821|ref|YP_003176594.1| - 0.00079 19.4 0.1 0.0019 18.1 0.1 1.7 1 0 0 1 1 1 1 TrkA-N domain F420_oxidored PF03807.12 gi|257386821|ref|YP_003176594.1| - 0.0022 18.4 0.2 0.005 17.2 0.1 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent ELFV_dehydrog PF00208.16 gi|257386821|ref|YP_003176594.1| - 0.0047 16.5 0.1 0.0088 15.6 0.1 1.5 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Shikimate_DH PF01488.15 gi|257386821|ref|YP_003176594.1| - 0.0079 16.2 0.1 0.018 15.1 0.1 1.6 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase AlaDh_PNT_C PF01262.16 gi|257386821|ref|YP_003176594.1| - 0.022 14.3 2.0 0.025 14.1 0.3 1.9 2 1 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain ParBc PF02195.13 gi|257386821|ref|YP_003176594.1| - 0.091 12.8 0.0 0.41 10.7 0.0 2.1 2 0 0 2 2 2 0 ParB-like nuclease domain Metallophos_2 PF12850.2 gi|257386822|ref|YP_003176595.1| - 2.3e-29 102.2 0.8 2.9e-29 101.9 0.6 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|257386822|ref|YP_003176595.1| - 3.1e-09 36.5 1.7 4.9e-09 35.8 1.2 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase DUF3220 PF11516.3 gi|257386822|ref|YP_003176595.1| - 0.014 15.3 0.1 0.031 14.2 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3120) AA_kinase PF00696.23 gi|257386823|ref|YP_003176596.1| - 9.7e-47 159.5 1.2 9.7e-47 159.5 0.9 1.5 2 0 0 2 2 2 1 Amino acid kinase family ACT_7 PF13840.1 gi|257386823|ref|YP_003176596.1| - 1.2e-19 69.5 0.0 3.7e-12 45.5 0.0 2.5 2 0 0 2 2 2 2 ACT domain ACT PF01842.20 gi|257386823|ref|YP_003176596.1| - 4.5e-12 45.1 1.4 3e-07 29.7 0.1 3.1 3 0 0 3 3 3 2 ACT domain ACT_4 PF13291.1 gi|257386823|ref|YP_003176596.1| - 0.023 15.0 0.0 2.3 8.6 0.0 2.6 2 0 0 2 2 2 0 ACT domain DUF21 PF01595.15 gi|257386825|ref|YP_003176598.1| - 4.3e-51 172.8 2.1 5.6e-51 172.4 1.5 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF21 CorC_HlyC PF03471.12 gi|257386825|ref|YP_003176598.1| - 4.4e-22 77.6 1.3 1.3e-21 76.1 0.1 2.4 2 1 0 2 2 2 1 Transporter associated domain CBS PF00571.23 gi|257386825|ref|YP_003176598.1| - 1.2e-16 60.2 3.1 7.3e-08 32.0 0.8 2.4 2 0 0 2 2 2 2 CBS domain DUF3040 PF11239.3 gi|257386827|ref|YP_003176600.1| - 0.18 11.9 9.4 0.085 12.9 2.2 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3040) Tetraspannin PF00335.15 gi|257386827|ref|YP_003176600.1| - 0.68 9.1 5.4 0.95 8.6 3.8 1.3 1 0 0 1 1 1 0 Tetraspanin family DUF2269 PF10027.4 gi|257386827|ref|YP_003176600.1| - 3.7 7.3 10.8 33 4.2 7.5 2.2 1 1 0 1 1 1 0 Predicted integral membrane protein (DUF2269) PolC_DP2 PF03833.8 gi|257386828|ref|YP_003176601.1| - 0 1325.0 0.1 0 1325.0 0.1 1.6 2 0 0 2 2 2 1 DNA polymerase II large subunit DP2 zinc-ribbons_6 PF07191.7 gi|257386828|ref|YP_003176601.1| - 0.18 11.6 7.7 0.68 9.7 0.1 3.2 3 0 0 3 3 3 0 zinc-ribbons PhnA_Zn_Ribbon PF08274.7 gi|257386828|ref|YP_003176601.1| - 1.2 8.9 4.9 5.7 6.8 2.8 2.7 2 1 0 2 2 2 0 PhnA Zinc-Ribbon DZR PF12773.2 gi|257386828|ref|YP_003176601.1| - 2.4 8.0 18.0 18 5.2 8.0 3.3 2 1 0 2 2 2 0 Double zinc ribbon DUF296 PF03479.10 gi|257386829|ref|YP_003176602.1| - 3.8e-26 91.0 0.0 4.2e-26 90.9 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF296) CAP59_mtransfer PF11735.3 gi|257386829|ref|YP_003176602.1| - 0.021 14.0 0.0 0.021 14.0 0.0 1.1 1 0 0 1 1 1 0 Cryptococcal mannosyltransferase 1 2_5_RNA_ligase2 PF13563.1 gi|257386830|ref|YP_003176603.1| - 7.8e-16 58.1 0.2 9.4e-16 57.8 0.1 1.0 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.4 gi|257386830|ref|YP_003176603.1| - 0.00018 21.3 0.0 0.0002 21.1 0.0 1.1 1 0 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain LigT_PEase PF02834.11 gi|257386830|ref|YP_003176603.1| - 0.0018 18.1 0.1 0.068 13.1 0.0 2.4 2 1 0 2 2 2 1 LigT like Phosphoesterase HTH_24 PF13412.1 gi|257386831|ref|YP_003176604.1| - 0.0023 17.2 0.1 0.0039 16.5 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|257386831|ref|YP_003176604.1| - 0.058 12.9 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|257386831|ref|YP_003176604.1| - 0.089 12.4 0.0 0.18 11.4 0.0 1.4 1 0 0 1 1 1 0 MarR family CcoS PF03597.10 gi|257386831|ref|YP_003176604.1| - 0.23 10.9 1.3 0.55 9.7 0.9 1.6 1 0 0 1 1 1 0 Cytochrome oxidase maturation protein cbb3-type Arginosuc_synth PF00764.14 gi|257386834|ref|YP_003176607.1| - 2.3e-145 484.5 0.1 2.7e-145 484.3 0.1 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase Asn_synthase PF00733.16 gi|257386834|ref|YP_003176607.1| - 6.5e-06 25.8 0.0 1.2e-05 24.9 0.0 1.4 1 0 0 1 1 1 1 Asparagine synthase QueC PF06508.8 gi|257386834|ref|YP_003176607.1| - 1.3e-05 24.6 0.0 2.3e-05 23.7 0.0 1.5 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC NAD_synthase PF02540.12 gi|257386834|ref|YP_003176607.1| - 0.00044 19.2 0.0 0.00072 18.5 0.0 1.2 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.11 gi|257386834|ref|YP_003176607.1| - 0.00097 17.7 0.0 0.0015 17.1 0.0 1.3 1 0 0 1 1 1 1 tRNA methyl transferase ATP_bind_3 PF01171.15 gi|257386834|ref|YP_003176607.1| - 0.19 11.2 0.0 0.43 10.0 0.0 1.7 2 0 0 2 2 2 0 PP-loop family Lyase_1 PF00206.15 gi|257386835|ref|YP_003176608.1| - 3.8e-56 190.5 0.2 7.4e-56 189.6 0.2 1.4 1 0 0 1 1 1 1 Lyase ASL_C2 PF14698.1 gi|257386835|ref|YP_003176608.1| - 6.4e-11 42.1 0.2 2.2e-10 40.4 0.2 2.0 1 0 0 1 1 1 1 Argininosuccinate lyase C-terminal DUF4262 PF14081.1 gi|257386835|ref|YP_003176608.1| - 0.098 12.7 0.1 0.45 10.6 0.0 2.1 2 1 0 2 2 2 0 Domain of unknown function (DUF4262) UCR_Fe-S_N PF10399.4 gi|257386835|ref|YP_003176608.1| - 3.4 6.9 8.4 0.4 9.8 0.2 2.8 2 0 0 2 2 2 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal DNA_RNApol_7kD PF03604.8 gi|257386836|ref|YP_003176609.1| - 0.00017 20.9 1.0 0.0029 17.0 0.9 2.1 1 1 1 2 2 2 2 DNA directed RNA polymerase, 7 kDa subunit zinc_ribbon_2 PF13240.1 gi|257386836|ref|YP_003176609.1| - 0.0012 18.2 0.0 0.0024 17.3 0.0 1.5 1 1 0 1 1 1 1 zinc-ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|257386836|ref|YP_003176609.1| - 0.0061 16.3 1.5 0.028 14.2 1.0 1.9 1 1 0 1 1 1 1 PhnA Zinc-Ribbon Zn-ribbon_8 PF09723.5 gi|257386836|ref|YP_003176609.1| - 0.0086 16.0 0.4 0.013 15.4 0.3 1.3 1 0 0 1 1 1 1 Zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|257386836|ref|YP_003176609.1| - 0.015 14.6 1.1 0.023 14.0 0.8 1.3 1 0 0 1 1 1 0 TFIIB zinc-binding DZR PF12773.2 gi|257386836|ref|YP_003176609.1| - 0.019 14.7 0.4 0.036 13.8 0.3 1.6 1 1 0 1 1 1 0 Double zinc ribbon HypA PF01155.14 gi|257386836|ref|YP_003176609.1| - 0.022 14.4 0.2 0.023 14.3 0.2 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family CpXC PF14353.1 gi|257386836|ref|YP_003176609.1| - 0.025 14.5 0.3 1.2 9.1 0.0 2.0 2 0 0 2 2 2 0 CpXC protein YhfH PF14149.1 gi|257386836|ref|YP_003176609.1| - 0.027 14.2 1.0 2.5 7.9 0.1 2.2 2 0 0 2 2 2 0 YhfH-like protein Desulfoferrod_N PF06397.7 gi|257386836|ref|YP_003176609.1| - 0.03 13.7 0.7 0.6 9.5 0.0 2.1 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain zf-ribbon_3 PF13248.1 gi|257386836|ref|YP_003176609.1| - 0.032 13.4 0.2 5.7 6.2 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Nudix_N_2 PF14803.1 gi|257386836|ref|YP_003176609.1| - 0.043 13.4 1.0 5.6 6.7 0.1 2.2 2 0 0 2 2 2 0 Nudix N-terminal RNA_POL_M_15KD PF02150.11 gi|257386836|ref|YP_003176609.1| - 0.044 13.4 0.2 0.58 9.8 0.0 2.1 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit DUF2387 PF09526.5 gi|257386836|ref|YP_003176609.1| - 0.089 12.7 2.3 2.3 8.2 0.3 2.0 1 1 1 2 2 2 0 Probable metal-binding protein (DUF2387) DUF678 PF05077.7 gi|257386836|ref|YP_003176609.1| - 0.094 12.7 1.6 0.14 12.1 0.1 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF678) zf-IS66 PF13005.2 gi|257386836|ref|YP_003176609.1| - 0.1 12.5 0.7 1.3 9.0 0.0 2.1 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 zf-TFIIB PF13453.1 gi|257386836|ref|YP_003176609.1| - 0.12 11.5 0.5 0.3 10.3 0.0 1.8 2 0 0 2 2 2 0 Transcription factor zinc-finger Prok-RING_1 PF14446.1 gi|257386836|ref|YP_003176609.1| - 0.18 11.5 3.6 0.44 10.3 2.5 1.6 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 Ribosomal_S27e PF01667.12 gi|257386836|ref|YP_003176609.1| - 0.19 11.2 0.7 0.28 10.7 0.5 1.3 1 1 0 1 1 1 0 Ribosomal protein S27 DUF983 PF06170.7 gi|257386836|ref|YP_003176609.1| - 0.24 11.5 1.0 17 5.6 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF983) zinc-ribbons_6 PF07191.7 gi|257386836|ref|YP_003176609.1| - 0.26 11.0 1.5 1.3 8.8 1.0 1.9 1 1 0 1 1 1 0 zinc-ribbons zf-dskA_traR PF01258.12 gi|257386836|ref|YP_003176609.1| - 0.35 10.6 2.3 2.1 8.1 1.6 1.9 1 1 0 1 1 1 0 Prokaryotic dksA/traR C4-type zinc finger Lar_restr_allev PF14354.1 gi|257386836|ref|YP_003176609.1| - 0.46 10.8 2.2 2.2 8.6 1.6 1.9 1 1 0 1 1 1 0 Restriction alleviation protein Lar RimK PF08443.6 gi|257386837|ref|YP_003176610.1| - 1.9e-34 118.8 0.0 2.8e-31 108.4 0.0 2.3 3 0 0 3 3 3 2 RimK-like ATP-grasp domain ATP-grasp_4 PF13535.1 gi|257386837|ref|YP_003176610.1| - 1e-15 57.9 0.0 1.6e-15 57.3 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain GSH-S_ATP PF02955.11 gi|257386837|ref|YP_003176610.1| - 1.1e-09 37.6 0.0 2e-09 36.8 0.0 1.4 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.9 gi|257386837|ref|YP_003176610.1| - 7.7e-08 32.3 0.0 1.3e-07 31.6 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|257386837|ref|YP_003176610.1| - 1.3e-07 30.7 0.0 1.9e-07 30.1 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon CPSase_L_D2 PF02786.12 gi|257386837|ref|YP_003176610.1| - 0.00018 20.8 0.0 0.00039 19.7 0.0 1.5 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp PF02222.17 gi|257386837|ref|YP_003176610.1| - 0.00066 19.0 0.0 0.011 15.1 0.0 2.3 2 0 0 2 2 2 1 ATP-grasp domain ATP-grasp_5 PF13549.1 gi|257386837|ref|YP_003176610.1| - 0.0037 16.5 0.0 0.015 14.5 0.0 2.0 1 1 1 2 2 2 1 ATP-grasp domain Semialdhyde_dh PF01118.19 gi|257386838|ref|YP_003176611.1| - 4.8e-27 94.6 0.0 9.4e-27 93.7 0.0 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.13 gi|257386838|ref|YP_003176611.1| - 1.2e-08 35.0 0.0 2.2e-08 34.1 0.0 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain Methyltransf_26 PF13659.1 gi|257386838|ref|YP_003176611.1| - 0.066 13.2 0.0 0.14 12.1 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain NAD_binding_10 PF13460.1 gi|257386838|ref|YP_003176611.1| - 0.088 12.8 0.0 0.19 11.7 0.0 1.5 1 0 0 1 1 1 0 NADH(P)-binding DapB_N PF01113.15 gi|257386838|ref|YP_003176611.1| - 0.11 12.4 0.0 0.31 10.9 0.0 1.7 1 1 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus AA_kinase PF00696.23 gi|257386839|ref|YP_003176612.1| - 3.5e-33 115.1 0.6 4e-33 114.9 0.4 1.0 1 0 0 1 1 1 1 Amino acid kinase family DUF1292 PF06949.6 gi|257386839|ref|YP_003176612.1| - 0.24 11.7 1.8 1.4 9.3 0.4 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF1292) Aminotran_3 PF00202.16 gi|257386840|ref|YP_003176613.1| - 1e-98 330.3 0.0 1.2e-98 330.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Peptidase_M20 PF01546.23 gi|257386841|ref|YP_003176614.1| - 1.9e-24 86.2 0.3 4.4e-24 85.0 0.0 1.7 2 0 0 2 2 2 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|257386841|ref|YP_003176614.1| - 3.5e-05 23.5 0.0 6e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain OTCace_N PF02729.16 gi|257386842|ref|YP_003176615.1| - 1.2e-48 164.3 0.0 2e-48 163.6 0.0 1.4 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.19 gi|257386842|ref|YP_003176615.1| - 2.2e-42 144.5 0.0 3.4e-42 143.9 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DUF295 PF03478.13 gi|257386842|ref|YP_003176615.1| - 0.14 11.4 0.0 0.38 10.1 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF295) UPF0104 PF03706.8 gi|257386843|ref|YP_003176616.1| - 0.021 14.1 0.9 0.02 14.1 0.6 1.0 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0104) CoA_binding_3 PF13727.1 gi|257386843|ref|YP_003176616.1| - 0.16 11.8 0.3 0.14 11.9 0.2 1.0 1 0 0 1 1 1 0 CoA-binding domain Fructosamin_kin PF03881.9 gi|257386844|ref|YP_003176617.1| - 2.2e-44 151.5 0.0 2.5e-44 151.4 0.0 1.0 1 0 0 1 1 1 1 Fructosamine kinase APH PF01636.18 gi|257386844|ref|YP_003176617.1| - 5.2e-22 78.7 4.7 7.4e-22 78.2 3.3 1.2 1 0 0 1 1 1 1 Phosphotransferase enzyme family APH_6_hur PF04655.9 gi|257386844|ref|YP_003176617.1| - 3.2e-05 23.2 0.2 0.00021 20.5 0.1 1.9 1 1 0 1 1 1 1 Aminoglycoside/hydroxyurea antibiotic resistance kinase EcKinase PF02958.15 gi|257386844|ref|YP_003176617.1| - 0.02 14.0 0.0 0.057 12.5 0.0 1.7 2 0 0 2 2 2 0 Ecdysteroid kinase TrmB PF01978.14 gi|257386846|ref|YP_003176619.1| - 1e-13 50.7 0.0 1.3e-13 50.4 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|257386846|ref|YP_003176619.1| - 1.4e-06 27.8 0.2 2.1e-06 27.2 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|257386846|ref|YP_003176619.1| - 9.9e-05 21.8 0.1 0.00016 21.1 0.1 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain TFIIE_alpha PF02002.12 gi|257386846|ref|YP_003176619.1| - 0.00016 21.1 0.0 0.00019 20.9 0.0 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_20 PF12840.2 gi|257386846|ref|YP_003176619.1| - 0.00026 20.7 0.3 0.00066 19.4 0.1 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain MarR PF01047.17 gi|257386846|ref|YP_003176619.1| - 0.00027 20.5 0.1 0.0004 20.0 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|257386846|ref|YP_003176619.1| - 0.00055 19.5 0.0 0.00085 18.9 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.1 gi|257386846|ref|YP_003176619.1| - 0.00066 19.4 0.2 0.0012 18.6 0.1 1.4 1 1 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_27 PF13463.1 gi|257386846|ref|YP_003176619.1| - 0.00069 19.8 0.2 0.00096 19.4 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain GntR PF00392.16 gi|257386846|ref|YP_003176619.1| - 0.00085 18.7 0.6 0.0014 17.9 0.4 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_11 PF08279.7 gi|257386846|ref|YP_003176619.1| - 0.0035 16.9 0.1 0.0055 16.3 0.1 1.3 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.1 gi|257386846|ref|YP_003176619.1| - 0.0051 16.1 0.0 0.0092 15.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_29 PF13551.1 gi|257386846|ref|YP_003176619.1| - 0.0078 16.3 0.1 0.011 15.8 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn helix Phage_rep_org_N PF09681.5 gi|257386846|ref|YP_003176619.1| - 0.011 15.3 0.0 0.063 12.8 0.0 1.9 1 1 1 2 2 2 0 N-terminal phage replisome organiser (Phage_rep_org_N) Penicillinase_R PF03965.11 gi|257386846|ref|YP_003176619.1| - 0.055 13.5 0.0 0.071 13.1 0.0 1.2 1 0 0 1 1 1 0 Penicillinase repressor PALP PF00291.20 gi|257386847|ref|YP_003176620.1| - 3.4e-66 223.5 3.4 4.4e-66 223.1 2.4 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme zinc_ribbon_5 PF13719.1 gi|257386847|ref|YP_003176620.1| - 0.11 12.1 0.2 0.75 9.4 0.0 2.5 3 0 0 3 3 3 0 zinc-ribbon domain C1_2 PF03107.11 gi|257386847|ref|YP_003176620.1| - 1.1 9.4 3.9 0.54 10.4 1.1 1.6 2 0 0 2 2 2 0 C1 domain DUF4135 PF13575.1 gi|257386848|ref|YP_003176621.1| - 8e-91 304.7 0.0 1.1e-90 304.3 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4135) LANC_like PF05147.8 gi|257386848|ref|YP_003176621.1| - 3.2e-52 177.2 0.0 5.2e-52 176.5 0.0 1.3 1 0 0 1 1 1 1 Lanthionine synthetase C-like protein Glyco_hydro_47 PF01532.15 gi|257386848|ref|YP_003176621.1| - 0.0059 15.3 0.0 0.015 14.0 0.0 1.5 2 0 0 2 2 2 1 Glycosyl hydrolase family 47 GST_C_2 PF13410.1 gi|257386848|ref|YP_003176621.1| - 0.04 13.8 2.3 5.8 6.8 0.0 3.5 3 1 0 3 3 3 0 Glutathione S-transferase, C-terminal domain Beta-lactamase PF00144.19 gi|257386849|ref|YP_003176622.1| - 1.1e-47 162.7 1.9 2.1e-47 161.7 1.3 1.4 1 0 0 1 1 1 1 Beta-lactamase Yip1 PF04893.12 gi|257386849|ref|YP_003176622.1| - 0.0051 16.3 2.1 0.011 15.2 1.4 1.5 1 0 0 1 1 1 1 Yip1 domain Phage_head_fibr PF11133.3 gi|257386849|ref|YP_003176622.1| - 0.057 12.6 0.0 0.094 11.8 0.0 1.2 1 0 0 1 1 1 0 Head fiber protein PadR PF03551.9 gi|257386851|ref|YP_003176624.1| - 2.2e-06 27.3 0.1 3.8e-06 26.5 0.0 1.5 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_20 PF12840.2 gi|257386851|ref|YP_003176624.1| - 3.5e-06 26.7 0.1 4.8e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|257386851|ref|YP_003176624.1| - 9.2e-06 25.2 0.0 1.3e-05 24.7 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|257386851|ref|YP_003176624.1| - 3.4e-05 23.4 0.1 5e-05 22.8 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|257386851|ref|YP_003176624.1| - 0.00013 22.1 0.1 0.00019 21.7 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_11 PF08279.7 gi|257386851|ref|YP_003176624.1| - 0.0011 18.6 0.2 0.0016 18.0 0.1 1.2 1 0 0 1 1 1 1 HTH domain TrmB PF01978.14 gi|257386851|ref|YP_003176624.1| - 0.0026 17.4 0.0 0.0066 16.1 0.0 1.7 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|257386851|ref|YP_003176624.1| - 0.0039 16.5 0.1 0.0058 15.9 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding ArsR PF09824.4 gi|257386851|ref|YP_003176624.1| - 0.0055 16.0 0.0 0.0069 15.7 0.0 1.0 1 0 0 1 1 1 1 ArsR transcriptional regulator Crp PF00325.15 gi|257386851|ref|YP_003176624.1| - 0.0064 15.9 0.1 0.011 15.1 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, crp family HTH_Crp_2 PF13545.1 gi|257386851|ref|YP_003176624.1| - 0.0085 15.8 0.2 0.01 15.6 0.1 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_29 PF13551.1 gi|257386851|ref|YP_003176624.1| - 0.011 15.8 0.2 0.015 15.4 0.1 1.2 1 0 0 1 1 1 0 Winged helix-turn helix Sulfolobus_pRN PF05584.6 gi|257386851|ref|YP_003176624.1| - 0.019 14.9 0.0 0.026 14.4 0.0 1.2 1 0 0 1 1 1 0 Sulfolobus plasmid regulatory protein HTH_DeoR PF08220.7 gi|257386851|ref|YP_003176624.1| - 0.024 14.1 0.4 0.042 13.3 0.2 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain RP-C PF03428.8 gi|257386851|ref|YP_003176624.1| - 0.027 13.9 0.1 0.044 13.2 0.0 1.3 1 1 0 1 1 1 0 Replication protein C N-terminal domain FUR PF01475.14 gi|257386851|ref|YP_003176624.1| - 0.027 14.3 0.1 0.054 13.4 0.1 1.6 1 1 0 1 1 1 0 Ferric uptake regulator family MarR PF01047.17 gi|257386851|ref|YP_003176624.1| - 0.038 13.7 0.1 0.06 13.0 0.1 1.3 1 0 0 1 1 1 0 MarR family HTH_IclR PF09339.5 gi|257386851|ref|YP_003176624.1| - 0.039 13.5 0.3 0.061 12.9 0.2 1.2 1 0 0 1 1 1 0 IclR helix-turn-helix domain TFIIE_alpha PF02002.12 gi|257386851|ref|YP_003176624.1| - 0.05 13.1 0.0 0.066 12.7 0.0 1.3 1 0 0 1 1 1 0 TFIIE alpha subunit DUF2513 PF10711.4 gi|257386851|ref|YP_003176624.1| - 0.055 13.5 0.0 0.075 13.1 0.0 1.2 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) Rrf2 PF02082.15 gi|257386851|ref|YP_003176624.1| - 0.14 12.2 0.1 0.24 11.5 0.1 1.4 1 0 0 1 1 1 0 Transcriptional regulator ABC_tran PF00005.22 gi|257386852|ref|YP_003176625.1| - 1.8e-32 112.4 0.0 2.9e-32 111.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|257386852|ref|YP_003176625.1| - 2.1e-13 50.9 0.1 1.8e-08 34.6 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|257386852|ref|YP_003176625.1| - 0.00037 19.9 0.2 0.00077 18.9 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|257386852|ref|YP_003176625.1| - 0.0051 16.2 0.0 0.009 15.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|257386852|ref|YP_003176625.1| - 0.01 15.0 0.0 1.3 8.1 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain MMR_HSR1 PF01926.18 gi|257386852|ref|YP_003176625.1| - 0.018 14.9 0.1 0.14 12.1 0.1 2.4 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_23 PF13476.1 gi|257386852|ref|YP_003176625.1| - 0.026 14.8 0.1 0.043 14.1 0.1 1.2 1 0 0 1 1 1 0 AAA domain DUF4162 PF13732.1 gi|257386852|ref|YP_003176625.1| - 0.11 13.0 0.0 0.22 12.0 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4162) ABC2_membrane_2 PF12679.2 gi|257386853|ref|YP_003176626.1| - 1.1e-21 76.8 8.5 1.1e-21 76.8 5.9 2.0 1 1 1 2 2 2 2 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|257386853|ref|YP_003176626.1| - 2.8e-17 62.6 7.3 3.5e-17 62.3 5.0 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|257386853|ref|YP_003176626.1| - 0.0001 21.6 1.7 0.00019 20.7 1.2 1.4 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|257386853|ref|YP_003176626.1| - 0.028 13.4 10.8 0.0091 15.0 5.8 1.4 1 1 0 1 1 1 0 ABC-2 family transporter protein ABC_tran PF00005.22 gi|257386854|ref|YP_003176627.1| - 4.4e-28 98.2 0.0 1.1e-27 97.0 0.0 1.6 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|257386854|ref|YP_003176627.1| - 9.9e-11 42.1 0.7 7.7e-06 26.0 0.0 2.2 1 1 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|257386854|ref|YP_003176627.1| - 0.0024 16.9 0.0 0.055 12.5 0.0 2.3 2 0 0 2 2 2 1 AAA ATPase domain SMC_N PF02463.14 gi|257386854|ref|YP_003176627.1| - 0.0029 16.8 0.1 0.44 9.7 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|257386854|ref|YP_003176627.1| - 0.0055 17.0 0.3 0.014 15.6 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|257386854|ref|YP_003176627.1| - 0.0062 16.6 1.0 0.095 12.8 0.7 2.3 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|257386854|ref|YP_003176627.1| - 0.0064 15.9 0.3 0.016 14.6 0.2 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain UPF0079 PF02367.12 gi|257386854|ref|YP_003176627.1| - 0.033 13.8 0.1 0.081 12.5 0.1 1.6 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA PF00004.24 gi|257386854|ref|YP_003176627.1| - 0.035 14.3 0.1 0.088 13.0 0.1 1.9 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.1 gi|257386854|ref|YP_003176627.1| - 0.037 13.4 0.7 0.3 10.4 0.5 2.3 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|257386854|ref|YP_003176627.1| - 0.043 13.2 0.2 0.71 9.2 0.1 2.0 1 1 1 2 2 2 0 AAA-like domain SRP54 PF00448.17 gi|257386854|ref|YP_003176627.1| - 0.047 13.1 0.3 0.088 12.2 0.2 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_16 PF13191.1 gi|257386854|ref|YP_003176627.1| - 0.064 13.2 0.0 0.15 12.0 0.0 1.7 1 1 0 1 1 1 0 AAA ATPase domain ArgK PF03308.11 gi|257386854|ref|YP_003176627.1| - 0.065 11.9 0.1 0.12 11.1 0.0 1.4 1 0 0 1 1 1 0 ArgK protein DUF4162 PF13732.1 gi|257386854|ref|YP_003176627.1| - 0.093 13.2 0.0 0.22 12.0 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4162) AAA_33 PF13671.1 gi|257386854|ref|YP_003176627.1| - 0.14 12.0 1.7 0.43 10.4 0.0 2.6 3 1 0 3 3 3 0 AAA domain ABC2_membrane_3 PF12698.2 gi|257386855|ref|YP_003176628.1| - 0.022 13.8 21.1 0.046 12.7 14.6 1.5 1 1 0 1 1 1 0 ABC-2 family transporter protein Cep57_CLD PF14073.1 gi|257386857|ref|YP_003176630.1| - 0.11 12.3 5.3 0.49 10.1 3.2 1.9 1 1 1 2 2 2 0 Centrosome localisation domain of Cep57 Pox_A_type_inc PF04508.7 gi|257386857|ref|YP_003176630.1| - 0.12 12.2 1.9 0.12 12.2 1.3 3.1 2 1 1 3 3 3 0 Viral A-type inclusion protein repeat 2-Hacid_dh_C PF02826.14 gi|257386858|ref|YP_003176631.1| - 4.2e-56 188.9 0.0 7e-56 188.1 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|257386858|ref|YP_003176631.1| - 1.8e-36 124.5 1.1 3.1e-36 123.7 0.6 1.5 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.10 gi|257386858|ref|YP_003176631.1| - 6.2e-05 22.8 0.2 0.00048 20.0 0.0 2.5 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase UDPG_MGDP_dh_C PF03720.10 gi|257386858|ref|YP_003176631.1| - 0.00042 20.4 0.1 0.0029 17.7 0.0 2.3 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain IlvN PF07991.7 gi|257386858|ref|YP_003176631.1| - 0.0021 17.4 0.0 0.0066 15.8 0.0 1.8 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain ELFV_dehydrog PF00208.16 gi|257386858|ref|YP_003176631.1| - 0.0075 15.8 0.5 0.032 13.8 0.0 2.0 2 0 0 2 2 2 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ACT PF01842.20 gi|257386858|ref|YP_003176631.1| - 0.0091 15.4 0.7 0.14 11.6 0.0 2.9 2 0 0 2 2 2 1 ACT domain F420_oxidored PF03807.12 gi|257386858|ref|YP_003176631.1| - 0.0098 16.3 1.0 0.23 11.8 0.0 3.1 3 0 0 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent TrkA_N PF02254.13 gi|257386858|ref|YP_003176631.1| - 0.031 14.2 2.7 0.18 11.7 0.0 3.3 4 0 0 4 4 4 0 TrkA-N domain FliC_SP PF12613.3 gi|257386858|ref|YP_003176631.1| - 0.046 13.9 2.3 7.5 6.8 0.1 2.8 2 0 0 2 2 2 0 Flagellin structural protein CBS PF00571.23 gi|257386860|ref|YP_003176633.1| - 9.2e-34 114.9 15.5 3.9e-12 45.7 0.6 4.1 4 0 0 4 4 4 4 CBS domain DUF2326 PF10088.4 gi|257386860|ref|YP_003176633.1| - 0.14 11.7 0.0 0.23 11.0 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2326) tRNA-synt_2b PF00587.20 gi|257386861|ref|YP_003176634.1| - 7.7e-56 188.3 0.0 1.1e-55 187.8 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|257386861|ref|YP_003176634.1| - 1.8e-18 66.2 0.0 3.9e-18 65.1 0.0 1.6 1 0 0 1 1 1 1 Anticodon binding domain zf-ribbon_3 PF13248.1 gi|257386861|ref|YP_003176634.1| - 0.0014 17.7 2.0 0.0024 17.0 0.4 2.2 2 1 0 2 2 2 1 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|257386861|ref|YP_003176634.1| - 0.037 13.9 0.8 3.4 7.6 0.0 2.6 3 0 0 3 3 3 0 Zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|257386861|ref|YP_003176634.1| - 0.3 10.6 2.4 13 5.4 0.4 2.6 2 0 0 2 2 2 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|257386861|ref|YP_003176634.1| - 0.43 10.9 2.0 4.3 7.7 0.1 2.5 1 1 1 2 2 2 0 Restriction alleviation protein Lar zf-IS66 PF13005.2 gi|257386861|ref|YP_003176634.1| - 3.7 7.5 5.2 49 4.0 3.6 2.4 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 Na_H_Exchanger PF00999.16 gi|257386863|ref|YP_003176636.1| - 4.3e-50 170.3 48.4 5.7e-50 169.9 33.6 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Class_IIIsignal PF04021.7 gi|257386863|ref|YP_003176636.1| - 0.13 11.9 0.1 0.13 11.9 0.1 6.6 10 0 0 10 10 10 0 Class III signal peptide TrkA_C PF02080.16 gi|257386864|ref|YP_003176637.1| - 2.8e-15 55.6 1.0 5.9e-15 54.6 0.1 1.9 2 0 0 2 2 2 1 TrkA-C domain PSD5 PF07637.6 gi|257386864|ref|YP_003176637.1| - 0.12 12.3 0.1 0.29 11.2 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1595) ERCC4 PF02732.10 gi|257386865|ref|YP_003176638.1| - 9.3e-24 83.8 0.0 3e-23 82.1 0.0 1.9 1 0 0 1 1 1 1 ERCC4 domain Helicase_C PF00271.26 gi|257386865|ref|YP_003176638.1| - 1.2e-18 66.7 0.0 2.6e-18 65.6 0.0 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|257386865|ref|YP_003176638.1| - 1.6e-17 63.5 0.0 4.5e-17 62.0 0.0 1.8 1 0 0 1 1 1 1 DEAD/DEAH box helicase HHH_2 PF12826.2 gi|257386865|ref|YP_003176638.1| - 1.9e-11 43.6 0.1 6.3e-11 41.9 0.1 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|257386865|ref|YP_003176638.1| - 5.7e-11 42.4 0.4 7.9e-10 38.7 0.0 2.9 3 0 0 3 3 3 1 Helix-hairpin-helix domain ResIII PF04851.10 gi|257386865|ref|YP_003176638.1| - 4.1e-10 39.7 0.0 1.3e-09 38.1 0.0 1.9 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HHH PF00633.18 gi|257386865|ref|YP_003176638.1| - 2.8e-09 36.1 0.3 5.6e-06 25.7 0.0 3.5 3 0 0 3 3 3 2 Helix-hairpin-helix motif 5_3_exonuc PF01367.15 gi|257386865|ref|YP_003176638.1| - 0.0046 17.1 0.1 0.038 14.2 0.0 2.4 2 1 1 3 3 3 1 5'-3' exonuclease, C-terminal SAM fold Helicase_C_2 PF13307.1 gi|257386865|ref|YP_003176638.1| - 0.012 15.6 0.4 0.032 14.1 0.0 1.9 2 0 0 2 2 2 0 Helicase C-terminal domain PUL PF08324.6 gi|257386865|ref|YP_003176638.1| - 0.027 13.2 0.0 0.09 11.5 0.0 1.7 2 0 0 2 2 2 0 PUL domain AhpC-TSA PF00578.16 gi|257386866|ref|YP_003176639.1| - 2.8e-10 39.9 0.0 3.9e-10 39.4 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|257386866|ref|YP_003176639.1| - 0.06 12.8 0.0 0.082 12.4 0.0 1.2 1 0 0 1 1 1 0 Redoxin Auto_anti-p27 PF06677.7 gi|257386867|ref|YP_003176640.1| - 8.2e-19 67.0 0.4 1.2e-18 66.5 0.3 1.2 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DZR PF12773.2 gi|257386867|ref|YP_003176640.1| - 0.0018 18.0 1.0 0.0035 17.1 0.7 1.4 1 0 0 1 1 1 1 Double zinc ribbon GFA PF04828.9 gi|257386867|ref|YP_003176640.1| - 0.0078 16.1 0.6 0.41 10.6 0.0 2.3 1 1 1 2 2 2 1 Glutathione-dependent formaldehyde-activating enzyme KAR9 PF08580.5 gi|257386867|ref|YP_003176640.1| - 0.014 13.6 0.1 0.014 13.6 0.1 1.1 1 0 0 1 1 1 0 Yeast cortical protein KAR9 zf-C3HC4_3 PF13920.1 gi|257386867|ref|YP_003176640.1| - 0.072 12.7 0.6 0.12 12.0 0.4 1.3 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-dskA_traR PF01258.12 gi|257386867|ref|YP_003176640.1| - 0.077 12.7 1.0 0.14 11.8 0.7 1.5 1 0 0 1 1 1 0 Prokaryotic dksA/traR C4-type zinc finger zf-ribbon_3 PF13248.1 gi|257386867|ref|YP_003176640.1| - 0.094 11.9 4.3 0.19 10.9 3.0 1.5 1 0 0 1 1 1 0 zinc-ribbon domain zinc-ribbons_6 PF07191.7 gi|257386867|ref|YP_003176640.1| - 0.1 12.3 0.2 0.19 11.5 0.1 1.3 1 0 0 1 1 1 0 zinc-ribbons DUF3279 PF11682.3 gi|257386867|ref|YP_003176640.1| - 0.11 12.1 0.1 0.17 11.4 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3279) Prok-RING_1 PF14446.1 gi|257386867|ref|YP_003176640.1| - 0.16 11.7 1.3 0.29 10.8 0.7 1.6 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 A2L_zn_ribbon PF08792.5 gi|257386867|ref|YP_003176640.1| - 0.28 10.7 2.0 0.57 9.7 1.4 1.5 1 0 0 1 1 1 0 A2L zinc ribbon domain Nudix_N_2 PF14803.1 gi|257386867|ref|YP_003176640.1| - 0.33 10.6 3.4 10 5.9 0.3 2.5 2 0 0 2 2 2 0 Nudix N-terminal Ldh_1_N PF00056.18 gi|257386868|ref|YP_003176641.1| - 3.4e-38 130.6 0.4 4.8e-38 130.1 0.2 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.13 gi|257386868|ref|YP_003176641.1| - 6e-33 114.0 0.0 9.4e-33 113.3 0.0 1.3 1 0 0 1 1 1 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain Caa3_CtaG PF09678.5 gi|257386869|ref|YP_003176642.1| - 0.026 13.4 3.6 0.03 13.2 2.5 1.1 1 0 0 1 1 1 0 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) DUF1700 PF08006.6 gi|257386869|ref|YP_003176642.1| - 0.63 9.3 3.6 0.71 9.1 2.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1700) Vma12 PF11712.3 gi|257386869|ref|YP_003176642.1| - 0.83 9.3 4.5 1.4 8.6 3.1 1.3 1 1 0 1 1 1 0 Endoplasmic reticulum-based factor for assembly of V-ATPase Herpes_LMP1 PF05297.6 gi|257386869|ref|YP_003176642.1| - 1.5 7.6 4.4 1.7 7.5 3.1 1.0 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) BPD_transp_2 PF02653.11 gi|257386872|ref|YP_003176645.1| - 0.027 13.4 4.1 0.037 12.9 2.9 1.3 1 1 0 1 1 1 0 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.11 gi|257386873|ref|YP_003176646.1| - 0.72 8.7 7.1 0.21 10.4 1.3 1.9 1 1 1 2 2 2 0 Branched-chain amino acid transport system / permease component DUF360 PF04020.8 gi|257386874|ref|YP_003176647.1| - 0.41 11.0 3.4 0.35 11.2 1.1 1.8 1 1 1 2 2 2 0 Membrane protein of unknown function DUF3948 PF13134.1 gi|257386875|ref|YP_003176648.1| - 0.057 12.8 0.5 7.4 6.1 0.1 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3948) BPD_transp_2 PF02653.11 gi|257386875|ref|YP_003176648.1| - 0.069 12.1 4.1 0.087 11.7 2.8 1.3 1 1 0 1 1 1 0 Branched-chain amino acid transport system / permease component DUF2072 PF09845.4 gi|257386877|ref|YP_003176650.1| - 2.6e-29 101.7 0.2 4.9e-14 52.3 0.0 2.1 2 0 0 2 2 2 2 Zn-ribbon containing protein (DUF2072) DUF1451 PF07295.6 gi|257386877|ref|YP_003176650.1| - 0.04 13.6 1.4 0.094 12.4 0.7 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1451) zf-C2H2_6 PF13912.1 gi|257386877|ref|YP_003176650.1| - 0.17 11.8 0.4 0.17 11.8 0.3 1.9 3 0 0 3 3 3 0 C2H2-type zinc finger zf-H2C2_2 PF13465.1 gi|257386877|ref|YP_003176650.1| - 0.43 10.9 0.1 0.43 10.9 0.1 1.9 2 0 0 2 2 2 0 Zinc-finger double domain zf-C2H2 PF00096.21 gi|257386877|ref|YP_003176650.1| - 3.5 8.1 6.2 1.7 9.1 0.6 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type DUF2073 PF09846.4 gi|257386878|ref|YP_003176651.1| - 2e-46 155.8 0.7 2.5e-46 155.6 0.5 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2073) MMR_HSR1 PF01926.18 gi|257386879|ref|YP_003176652.1| - 9.7e-15 54.5 0.0 1.3e-14 54.1 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU PF00009.22 gi|257386879|ref|YP_003176652.1| - 3.6e-10 39.5 0.1 0.00023 20.6 0.0 2.7 2 2 0 2 2 2 2 Elongation factor Tu GTP binding domain Arf PF00025.16 gi|257386879|ref|YP_003176652.1| - 1.9e-07 30.5 0.0 0.00022 20.5 0.0 2.6 2 1 1 3 3 3 2 ADP-ribosylation factor family AAA_17 PF13207.1 gi|257386879|ref|YP_003176652.1| - 1.1e-05 26.2 0.2 2e-05 25.4 0.1 1.7 1 1 0 1 1 1 1 AAA domain Miro PF08477.8 gi|257386879|ref|YP_003176652.1| - 5.3e-05 23.7 0.0 0.00012 22.5 0.0 1.6 1 1 0 1 1 1 1 Miro-like protein FeoB_N PF02421.13 gi|257386879|ref|YP_003176652.1| - 0.00012 21.3 0.4 0.0021 17.3 0.3 2.5 1 1 0 1 1 1 1 Ferrous iron transport protein B AAA_18 PF13238.1 gi|257386879|ref|YP_003176652.1| - 0.00026 21.3 0.0 0.00052 20.3 0.0 1.7 1 1 0 1 1 1 1 AAA domain SRPRB PF09439.5 gi|257386879|ref|YP_003176652.1| - 0.00035 19.8 0.0 0.4 9.8 0.0 2.3 2 0 0 2 2 2 2 Signal recognition particle receptor beta subunit NB-ARC PF00931.17 gi|257386879|ref|YP_003176652.1| - 0.00051 18.9 0.0 0.0036 16.2 0.0 1.9 2 0 0 2 2 2 1 NB-ARC domain Dynamin_N PF00350.18 gi|257386879|ref|YP_003176652.1| - 0.00073 19.3 0.0 0.06 13.1 0.0 2.4 1 1 1 2 2 2 1 Dynamin family Septin PF00735.13 gi|257386879|ref|YP_003176652.1| - 0.00081 18.4 0.0 0.0021 17.1 0.0 1.5 1 1 0 1 1 1 1 Septin AAA_28 PF13521.1 gi|257386879|ref|YP_003176652.1| - 0.0018 18.2 0.2 0.033 14.1 0.2 2.3 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|257386879|ref|YP_003176652.1| - 0.0031 16.6 0.0 0.0069 15.5 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin AAA_16 PF13191.1 gi|257386879|ref|YP_003176652.1| - 0.0051 16.8 0.0 0.0069 16.3 0.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain cobW PF02492.14 gi|257386879|ref|YP_003176652.1| - 0.0053 16.2 0.0 3.6 7.0 0.0 2.3 2 0 0 2 2 2 2 CobW/HypB/UreG, nucleotide-binding domain AAA PF00004.24 gi|257386879|ref|YP_003176652.1| - 0.0059 16.7 0.0 0.021 14.9 0.0 1.9 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.1 gi|257386879|ref|YP_003176652.1| - 0.0077 15.9 0.1 0.056 13.2 0.0 2.2 2 0 0 2 2 2 1 Part of AAA domain RNA_helicase PF00910.17 gi|257386879|ref|YP_003176652.1| - 0.011 15.8 0.0 0.021 14.9 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_22 PF13401.1 gi|257386879|ref|YP_003176652.1| - 0.016 15.3 0.0 0.026 14.6 0.0 1.6 1 1 0 1 1 1 0 AAA domain ArgK PF03308.11 gi|257386879|ref|YP_003176652.1| - 0.017 13.9 0.1 0.6 8.8 0.0 2.6 2 1 0 2 2 2 0 ArgK protein HGD-D PF06050.8 gi|257386879|ref|YP_003176652.1| - 0.019 13.8 0.0 0.052 12.3 0.0 1.8 1 1 0 1 1 1 0 2-hydroxyglutaryl-CoA dehydratase, D-component ABC_tran PF00005.22 gi|257386879|ref|YP_003176652.1| - 0.034 14.4 0.0 0.043 14.0 0.0 1.4 1 1 0 1 1 1 0 ABC transporter AAA_14 PF13173.1 gi|257386879|ref|YP_003176652.1| - 0.037 13.9 0.0 0.077 12.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain Arch_ATPase PF01637.13 gi|257386879|ref|YP_003176652.1| - 0.039 13.6 0.0 0.065 12.9 0.0 1.7 1 1 0 1 1 1 0 Archaeal ATPase RuvB_N PF05496.7 gi|257386879|ref|YP_003176652.1| - 0.043 12.8 0.0 0.073 12.1 0.0 1.3 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus NACHT PF05729.7 gi|257386879|ref|YP_003176652.1| - 0.066 12.8 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 NACHT domain ATP_bind_1 PF03029.12 gi|257386879|ref|YP_003176652.1| - 0.073 12.5 0.1 8.7 5.7 0.0 3.0 2 1 0 3 3 3 0 Conserved hypothetical ATP binding protein Parvo_NS1 PF01057.12 gi|257386879|ref|YP_003176652.1| - 0.081 11.7 0.0 0.14 11.0 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 MobB PF03205.9 gi|257386879|ref|YP_003176652.1| - 0.087 12.5 0.0 0.25 11.0 0.0 1.8 1 1 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_24 PF13479.1 gi|257386879|ref|YP_003176652.1| - 0.1 12.1 0.5 0.2 11.1 0.3 1.8 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|257386879|ref|YP_003176652.1| - 0.1 11.9 0.0 0.23 10.8 0.0 1.8 1 1 0 1 1 1 0 AAA domain Cdc6_C PF09079.6 gi|257386880|ref|YP_003176653.1| - 5.2e-28 96.5 0.1 1.9e-27 94.7 0.0 2.1 2 0 0 2 2 1 1 CDC6, C terminal AAA_16 PF13191.1 gi|257386880|ref|YP_003176653.1| - 1.7e-13 51.0 1.9 2.7e-12 47.0 0.0 2.9 3 0 0 3 3 3 1 AAA ATPase domain AAA_22 PF13401.1 gi|257386880|ref|YP_003176653.1| - 1.7e-09 37.9 0.2 3.7e-08 33.5 0.1 2.4 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|257386880|ref|YP_003176653.1| - 5.9e-09 36.2 0.1 0.00045 20.4 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|257386880|ref|YP_003176653.1| - 0.00012 21.8 0.1 0.00031 20.5 0.0 1.7 1 1 0 1 1 1 1 Archaeal ATPase AAA_2 PF07724.9 gi|257386880|ref|YP_003176653.1| - 0.0004 20.3 0.0 0.0068 16.3 0.0 2.4 1 1 0 1 1 1 1 AAA domain (Cdc48 subfamily) T2SE PF00437.15 gi|257386880|ref|YP_003176653.1| - 0.00076 18.4 0.0 0.0014 17.5 0.0 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_18 PF13238.1 gi|257386880|ref|YP_003176653.1| - 0.0013 19.0 0.5 0.0054 17.0 0.1 2.3 2 1 0 2 2 1 1 AAA domain NB-ARC PF00931.17 gi|257386880|ref|YP_003176653.1| - 0.0019 17.1 0.0 0.0036 16.2 0.0 1.4 1 0 0 1 1 1 1 NB-ARC domain DUF815 PF05673.8 gi|257386880|ref|YP_003176653.1| - 0.0025 16.8 0.0 0.0044 15.9 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) Sigma54_activat PF00158.21 gi|257386880|ref|YP_003176653.1| - 0.0033 16.8 0.0 0.0077 15.7 0.0 1.6 1 0 0 1 1 1 1 Sigma-54 interaction domain RuvB_N PF05496.7 gi|257386880|ref|YP_003176653.1| - 0.0038 16.2 0.0 0.0088 15.1 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_17 PF13207.1 gi|257386880|ref|YP_003176653.1| - 0.0042 17.8 1.1 0.012 16.4 0.1 2.4 2 2 0 2 2 1 1 AAA domain DEAD PF00270.24 gi|257386880|ref|YP_003176653.1| - 0.0045 16.5 0.4 2.1 7.8 0.0 3.0 3 0 0 3 3 3 1 DEAD/DEAH box helicase KAP_NTPase PF07693.9 gi|257386880|ref|YP_003176653.1| - 0.028 13.4 0.1 0.15 11.0 0.0 1.8 1 1 0 2 2 2 0 KAP family P-loop domain AAA_24 PF13479.1 gi|257386880|ref|YP_003176653.1| - 0.047 13.2 0.0 0.097 12.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|257386880|ref|YP_003176653.1| - 0.065 12.7 2.1 0.53 9.7 1.5 2.1 1 1 0 1 1 1 0 FtsK/SpoIIIE family NACHT PF05729.7 gi|257386880|ref|YP_003176653.1| - 0.088 12.4 0.1 0.62 9.7 0.0 2.3 2 1 0 2 2 2 0 NACHT domain Kinesin PF00225.18 gi|257386880|ref|YP_003176653.1| - 0.1 11.3 0.0 0.17 10.5 0.0 1.3 1 0 0 1 1 1 0 Kinesin motor domain DUF2075 PF09848.4 gi|257386880|ref|YP_003176653.1| - 0.11 11.4 0.1 0.19 10.6 0.0 1.5 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) ResIII PF04851.10 gi|257386880|ref|YP_003176653.1| - 0.12 12.2 0.1 0.2 11.4 0.1 1.5 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit DUF2278 PF10042.4 gi|257386880|ref|YP_003176653.1| - 0.14 11.8 0.0 0.35 10.5 0.0 1.6 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2278) RNA_helicase PF00910.17 gi|257386880|ref|YP_003176653.1| - 0.14 12.3 0.0 0.38 10.9 0.0 1.8 1 0 0 1 1 1 0 RNA helicase Peptidase_S24 PF00717.18 gi|257386881|ref|YP_003176654.1| - 7.7e-07 28.6 0.2 1.4e-06 27.8 0.1 1.5 1 1 0 1 1 1 1 Peptidase S24-like PepSY_TM_1 PF13172.1 gi|257386881|ref|YP_003176654.1| - 0.084 12.6 3.0 0.15 11.8 2.1 1.4 1 0 0 1 1 1 0 PepSY-associated TM helix PepSY_TM PF03929.11 gi|257386881|ref|YP_003176654.1| - 3.7 8.1 5.0 8.2 7.0 3.5 1.6 1 0 0 1 1 1 0 PepSY-associated TM helix DNA_pol_E_B PF04042.11 gi|257386882|ref|YP_003176655.1| - 7.3e-14 51.5 0.0 1.1e-13 50.9 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase alpha/epsilon subunit B Metallophos_2 PF12850.2 gi|257386882|ref|YP_003176655.1| - 4.1e-13 49.4 0.5 8.8e-13 48.3 0.3 1.6 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|257386882|ref|YP_003176655.1| - 5.7e-09 35.6 1.3 9.7e-09 34.9 0.9 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase tRNA_anti_2 PF13742.1 gi|257386882|ref|YP_003176655.1| - 0.04 13.7 0.0 0.078 12.8 0.0 1.5 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain CoA_binding_2 PF13380.1 gi|257386882|ref|YP_003176655.1| - 0.091 12.9 0.0 0.21 11.7 0.0 1.5 1 0 0 1 1 1 0 CoA binding domain DUF2298 PF10060.4 gi|257386883|ref|YP_003176656.1| - 0.024 13.5 2.5 0.026 13.4 1.7 1.0 1 0 0 1 1 1 0 Uncharacterized membrane protein (DUF2298) DUF4401 PF14351.1 gi|257386883|ref|YP_003176656.1| - 0.52 9.2 7.9 0.73 8.7 5.2 1.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4401) Cys_Met_Meta_PP PF01053.15 gi|257386884|ref|YP_003176657.1| - 2.8e-140 467.0 0.0 3.1e-140 466.8 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.16 gi|257386884|ref|YP_003176657.1| - 3.7e-09 35.9 0.0 5.4e-09 35.4 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|257386884|ref|YP_003176657.1| - 2.9e-07 29.8 0.1 6.9e-07 28.6 0.1 1.5 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.14 gi|257386884|ref|YP_003176657.1| - 1.1e-06 27.6 0.0 2e-06 26.8 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|257386884|ref|YP_003176657.1| - 0.0018 17.4 0.0 0.0039 16.3 0.0 1.6 1 0 0 1 1 1 1 Beta-eliminating lyase TPP_enzyme_N PF02776.13 gi|257386884|ref|YP_003176657.1| - 0.013 15.0 2.3 2.9 7.3 0.3 2.7 3 0 0 3 3 3 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain SLA_LP_auto_ag PF05889.8 gi|257386884|ref|YP_003176657.1| - 0.14 10.5 0.0 0.21 10.0 0.0 1.2 1 0 0 1 1 1 0 Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) ABC2_membrane_3 PF12698.2 gi|257386885|ref|YP_003176658.1| - 0.13 11.2 2.4 0.18 10.8 1.7 1.3 1 1 0 1 1 1 0 ABC-2 family transporter protein PSI_PsaJ PF01701.13 gi|257386885|ref|YP_003176658.1| - 2.5 7.9 5.3 6.5 6.6 0.4 2.5 2 0 0 2 2 2 0 Photosystem I reaction centre subunit IX / PsaJ SNARE_assoc PF09335.6 gi|257386885|ref|YP_003176658.1| - 8.6 6.5 13.2 1 9.6 4.4 2.3 2 1 0 2 2 2 0 SNARE associated Golgi protein HAD PF12710.2 gi|257386886|ref|YP_003176659.1| - 1.6e-19 70.8 0.6 2e-19 70.5 0.4 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|257386886|ref|YP_003176659.1| - 1e-15 58.7 5.0 3.1e-12 47.3 1.0 2.1 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|257386886|ref|YP_003176659.1| - 8.4e-11 41.9 0.1 2.2e-06 27.4 0.0 3.1 3 0 0 3 3 3 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|257386886|ref|YP_003176659.1| - 7.7e-09 36.0 0.1 1.6e-08 35.0 0.1 1.5 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.7 gi|257386886|ref|YP_003176659.1| - 0.00063 18.9 0.0 0.0063 15.7 0.0 2.0 2 0 0 2 2 2 1 Putative Phosphatase Hydrolase_6 PF13344.1 gi|257386886|ref|YP_003176659.1| - 0.028 14.3 0.0 0.11 12.3 0.0 2.0 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase Glyco_trans_4_4 PF13579.1 gi|257386886|ref|YP_003176659.1| - 0.12 12.4 0.1 0.19 11.8 0.1 1.3 1 0 0 1 1 1 0 Glycosyl transferase 4-like domain Helicase_C_2 PF13307.1 gi|257386888|ref|YP_003176661.1| - 1.1e-29 103.5 0.0 3.1e-29 102.0 0.0 1.8 2 0 0 2 2 2 1 Helicase C-terminal domain DEAD_2 PF06733.10 gi|257386888|ref|YP_003176661.1| - 6.7e-21 74.4 0.3 3.6e-20 72.0 0.2 2.0 1 1 0 1 1 1 1 DEAD_2 DEAD PF00270.24 gi|257386888|ref|YP_003176661.1| - 2.2e-08 33.8 0.1 9.9e-06 25.1 0.0 3.1 3 0 0 3 3 3 1 DEAD/DEAH box helicase ResIII PF04851.10 gi|257386888|ref|YP_003176661.1| - 1.6e-05 24.7 0.1 0.0003 20.6 0.0 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_34 PF13872.1 gi|257386888|ref|YP_003176661.1| - 0.0019 17.0 0.0 0.0038 16.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing NTP hydrolase pore-1 Zot PF05707.7 gi|257386888|ref|YP_003176661.1| - 0.0022 17.4 0.0 1.1 8.6 0.0 2.4 2 0 0 2 2 2 2 Zonular occludens toxin (Zot) KaiC PF06745.8 gi|257386888|ref|YP_003176661.1| - 0.012 14.7 0.0 0.023 13.8 0.0 1.4 1 0 0 1 1 1 0 KaiC AAA_19 PF13245.1 gi|257386888|ref|YP_003176661.1| - 0.03 14.0 0.1 0.087 12.5 0.0 1.8 1 0 0 1 1 1 0 Part of AAA domain DUF2075 PF09848.4 gi|257386888|ref|YP_003176661.1| - 0.057 12.3 0.1 1.7 7.4 0.0 2.3 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) PhoH PF02562.11 gi|257386888|ref|YP_003176661.1| - 0.079 12.1 0.0 0.27 10.4 0.0 1.8 2 0 0 2 2 2 0 PhoH-like protein Cation_efflux PF01545.16 gi|257386889|ref|YP_003176662.1| - 3.8e-49 167.2 0.1 4.4e-49 167.0 0.1 1.0 1 0 0 1 1 1 1 Cation efflux family DUF161 PF02588.10 gi|257386889|ref|YP_003176662.1| - 0.36 11.1 3.3 2.7 8.3 0.1 2.7 2 0 0 2 2 2 0 Uncharacterized BCR, YitT family COG1284 DUF2029 PF09594.5 gi|257386889|ref|YP_003176662.1| - 3.2 7.2 10.2 1.3 8.5 3.7 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF2029) Metallophos_2 PF12850.2 gi|257386890|ref|YP_003176663.1| - 1.8e-25 89.6 0.3 2e-25 89.4 0.2 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|257386890|ref|YP_003176663.1| - 1.3e-05 24.6 1.7 0.076 12.3 0.0 2.3 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase Usp PF00582.21 gi|257386890|ref|YP_003176663.1| - 0.11 12.7 0.5 0.17 12.0 0.4 1.3 1 1 0 1 1 1 0 Universal stress protein family HTH_20 PF12840.2 gi|257386891|ref|YP_003176664.1| - 2.5e-13 49.5 1.7 2.6e-13 49.5 0.4 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|257386891|ref|YP_003176664.1| - 9.7e-07 28.0 0.0 1.4e-06 27.5 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|257386891|ref|YP_003176664.1| - 1.9e-05 24.2 0.1 3.3e-05 23.4 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.1 gi|257386891|ref|YP_003176664.1| - 0.075 13.0 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain TrmB PF01978.14 gi|257386891|ref|YP_003176664.1| - 0.079 12.6 0.0 0.14 11.8 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|257386891|ref|YP_003176664.1| - 0.15 11.8 0.0 0.24 11.1 0.0 1.3 1 0 0 1 1 1 0 MarR family DUF4381 PF14316.1 gi|257386892|ref|YP_003176665.1| - 0.053 13.6 0.1 0.053 13.6 0.1 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4381) HAMP PF00672.20 gi|257386892|ref|YP_003176665.1| - 0.075 13.2 0.9 0.085 13.0 0.6 1.0 1 0 0 1 1 1 0 HAMP domain BPD_transp_2 PF02653.11 gi|257386892|ref|YP_003176665.1| - 0.099 11.5 0.9 0.1 11.5 0.6 1.0 1 0 0 1 1 1 0 Branched-chain amino acid transport system / permease component DUF3333 PF11812.3 gi|257386892|ref|YP_003176665.1| - 0.23 11.4 0.7 0.28 11.1 0.5 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF3333) Peptidase_M29 PF02073.10 gi|257386893|ref|YP_003176666.1| - 5e-110 367.9 0.9 5.8e-110 367.7 0.6 1.0 1 0 0 1 1 1 1 Thermophilic metalloprotease (M29) TrkA_C PF02080.16 gi|257386893|ref|YP_003176666.1| - 0.066 12.8 0.1 0.19 11.3 0.1 1.8 1 0 0 1 1 1 0 TrkA-C domain YhfH PF14149.1 gi|257386895|ref|YP_003176668.1| - 0.05 13.4 0.7 0.09 12.5 0.5 1.5 1 1 0 1 1 1 0 YhfH-like protein DUF951 PF06107.6 gi|257386895|ref|YP_003176668.1| - 0.053 13.0 0.1 0.08 12.4 0.0 1.4 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF951) AAA PF00004.24 gi|257386896|ref|YP_003176669.1| - 0.009 16.2 0.0 0.045 13.9 0.0 1.9 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) PALP PF00291.20 gi|257386899|ref|YP_003176672.1| - 1.5e-78 264.1 4.6 1.9e-78 263.8 3.2 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACT_4 PF13291.1 gi|257386899|ref|YP_003176672.1| - 6e-05 23.3 0.0 0.00023 21.4 0.0 1.9 2 0 0 2 2 2 1 ACT domain ACT PF01842.20 gi|257386899|ref|YP_003176672.1| - 0.00044 19.6 1.5 0.00099 18.5 0.1 2.3 2 0 0 2 2 2 1 ACT domain Ribonuc_L-PSP PF01042.16 gi|257386900|ref|YP_003176673.1| - 2.2e-38 130.7 0.2 2.5e-38 130.5 0.1 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP Citrate_synt PF00285.16 gi|257386902|ref|YP_003176675.1| - 8.9e-133 442.4 0.1 1e-132 442.2 0.0 1.0 1 0 0 1 1 1 1 Citrate synthase DUF2795 PF11387.3 gi|257386902|ref|YP_003176675.1| - 0.079 12.8 0.5 17 5.3 0.0 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2795) TrkA_C PF02080.16 gi|257386903|ref|YP_003176676.1| - 6.1e-29 99.4 1.0 5.3e-16 57.9 0.1 2.6 2 0 0 2 2 2 2 TrkA-C domain PhoU PF01895.14 gi|257386903|ref|YP_003176676.1| - 2.2e-15 56.8 7.1 6.7e-07 29.6 0.1 2.5 2 0 0 2 2 2 2 PhoU domain PhoU_div PF01865.11 gi|257386903|ref|YP_003176676.1| - 0.0026 16.9 1.5 0.95 8.5 0.1 2.2 2 0 0 2 2 2 2 Protein of unknown function DUF47 Abi PF02517.11 gi|257386904|ref|YP_003176677.1| - 0.97 9.6 4.6 1.2 9.3 3.2 1.1 1 0 0 1 1 1 0 CAAX protease self-immunity DUF4131 PF13567.1 gi|257386904|ref|YP_003176677.1| - 0.98 8.8 5.5 1.1 8.6 3.8 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) AstE_AspA PF04952.9 gi|257386905|ref|YP_003176678.1| - 2.2e-55 187.6 0.0 2.5e-55 187.4 0.0 1.0 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family PYNP_C PF07831.8 gi|257386905|ref|YP_003176678.1| - 0.13 11.7 0.0 0.26 10.7 0.0 1.5 1 0 0 1 1 1 0 Pyrimidine nucleoside phosphorylase C-terminal domain PALP PF00291.20 gi|257386906|ref|YP_003176679.1| - 1.8e-56 191.6 4.2 2.1e-56 191.4 2.9 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme zf-RING_5 PF14634.1 gi|257386906|ref|YP_003176679.1| - 0.22 11.2 0.8 0.35 10.6 0.6 1.3 1 0 0 1 1 1 0 zinc-RING finger domain Glyco_hydro_9 PF00759.14 gi|257386908|ref|YP_003176681.1| - 3.1e-14 52.7 2.1 3e-09 36.3 2.1 2.1 2 0 0 2 2 2 2 Glycosyl hydrolase family 9 CelD_N PF02927.9 gi|257386908|ref|YP_003176681.1| - 7.9e-11 42.0 0.0 1.8e-10 40.9 0.0 1.6 1 0 0 1 1 1 1 N-terminal ig-like domain of cellulase Prenyltrans_2 PF13249.1 gi|257386908|ref|YP_003176681.1| - 0.0012 19.2 2.0 4.7 7.6 0.2 3.5 3 0 0 3 3 3 2 Prenyltransferase-like DUF1743 PF08489.6 gi|257386910|ref|YP_003176683.1| - 1.9e-39 134.0 0.0 2.8e-39 133.5 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1743) tRNA_anti-codon PF01336.20 gi|257386910|ref|YP_003176683.1| - 4.5e-06 26.4 0.0 1.6e-05 24.6 0.0 1.9 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain tRNA_anti_2 PF13742.1 gi|257386910|ref|YP_003176683.1| - 0.0011 18.7 0.0 0.0022 17.8 0.0 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain Zn_Tnp_IS1595 PF12760.2 gi|257386910|ref|YP_003176683.1| - 0.032 14.0 0.3 0.073 12.8 0.2 1.6 1 0 0 1 1 1 0 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|257386910|ref|YP_003176683.1| - 0.075 12.7 0.5 0.15 11.6 0.4 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain C1_3 PF07649.7 gi|257386910|ref|YP_003176683.1| - 1.1 9.3 4.8 0.45 10.5 1.4 1.8 2 0 0 2 2 2 0 C1-like domain HTH_3 PF01381.17 gi|257386911|ref|YP_003176684.1| - 8.2e-09 35.1 0.0 1.3e-08 34.5 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.1 gi|257386911|ref|YP_003176684.1| - 4.1e-06 26.8 0.3 9.5e-06 25.7 0.2 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|257386911|ref|YP_003176684.1| - 9.5e-06 25.5 0.0 1.8e-05 24.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|257386911|ref|YP_003176684.1| - 0.00024 20.6 0.0 0.00053 19.5 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_23 PF13384.1 gi|257386911|ref|YP_003176684.1| - 0.00039 19.9 0.1 0.0012 18.4 0.0 1.8 2 0 0 2 2 2 1 Homeodomain-like domain Sigma70_r4 PF04545.11 gi|257386911|ref|YP_003176684.1| - 0.012 14.8 0.0 0.026 13.8 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_25 PF13413.1 gi|257386911|ref|YP_003176684.1| - 0.013 15.1 0.0 0.026 14.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_28 PF13518.1 gi|257386911|ref|YP_003176684.1| - 0.014 15.3 0.0 0.028 14.4 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_10 PF04967.7 gi|257386911|ref|YP_003176684.1| - 0.036 13.6 0.0 0.066 12.8 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain HTH_8 PF02954.14 gi|257386911|ref|YP_003176684.1| - 0.053 13.0 0.0 0.12 11.9 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family NUMOD1 PF07453.8 gi|257386911|ref|YP_003176684.1| - 0.093 12.6 0.0 0.18 11.6 0.0 1.5 1 0 0 1 1 1 0 NUMOD1 domain GST_N_3 PF13417.1 gi|257386912|ref|YP_003176685.1| - 5e-13 49.0 0.0 5.8e-13 48.8 0.0 1.0 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Glutaredoxin PF00462.19 gi|257386912|ref|YP_003176685.1| - 2.4e-11 43.4 0.0 3.6e-11 42.8 0.0 1.3 1 0 0 1 1 1 1 Glutaredoxin GST_N_2 PF13409.1 gi|257386912|ref|YP_003176685.1| - 3.2e-09 36.6 0.0 3.7e-09 36.4 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain DUF836 PF05768.9 gi|257386912|ref|YP_003176685.1| - 0.016 15.4 0.2 0.016 15.4 0.2 1.3 1 1 0 1 1 1 0 Glutaredoxin-like domain (DUF836) Rop PF01815.11 gi|257386912|ref|YP_003176685.1| - 0.061 12.7 0.1 0.094 12.1 0.1 1.3 1 0 0 1 1 1 0 Rop protein Xan_ur_permease PF00860.15 gi|257386913|ref|YP_003176686.1| - 5.4e-36 123.9 42.3 7.9e-36 123.3 29.3 1.2 1 0 0 1 1 1 1 Permease family Pribosyltran PF00156.22 gi|257386914|ref|YP_003176687.1| - 2.7e-11 43.2 1.8 6.1e-11 42.1 1.2 1.6 1 1 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|257386914|ref|YP_003176687.1| - 0.00018 20.8 0.1 0.00025 20.3 0.1 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PRTase_2 PF15609.1 gi|257386914|ref|YP_003176687.1| - 0.027 13.7 0.6 0.041 13.1 0.2 1.4 1 1 0 1 1 1 0 Phosphoribosyl transferase Pribosyl_synth PF14572.1 gi|257386914|ref|YP_003176687.1| - 0.068 12.9 0.0 0.085 12.5 0.0 1.2 1 0 0 1 1 1 0 Phosphoribosyl synthetase-associated domain Pribosyltran PF00156.22 gi|257386915|ref|YP_003176688.1| - 1.1e-21 76.8 0.0 2.1e-21 75.9 0.0 1.4 2 0 0 2 2 2 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|257386915|ref|YP_003176688.1| - 0.0044 16.2 0.0 0.0067 15.6 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase DUF3984 PF13136.1 gi|257386915|ref|YP_003176688.1| - 0.0049 16.1 0.0 0.0065 15.7 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3984) PAS_3 PF08447.6 gi|257386916|ref|YP_003176689.1| - 3.1e-27 94.4 0.4 9.4e-13 48.0 0.1 2.5 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.1 gi|257386916|ref|YP_003176689.1| - 9.6e-26 90.1 0.1 6.8e-14 52.1 0.0 2.5 2 0 0 2 2 2 2 PAS domain PAS_4 PF08448.5 gi|257386916|ref|YP_003176689.1| - 2.4e-23 82.2 1.1 3.4e-14 52.8 0.1 2.5 2 0 0 2 2 2 2 PAS fold PAS PF00989.19 gi|257386916|ref|YP_003176689.1| - 4e-15 55.5 0.0 8.1e-13 48.1 0.0 2.5 2 0 0 2 2 2 1 PAS fold HATPase_c PF02518.21 gi|257386916|ref|YP_003176689.1| - 1.5e-14 53.6 0.0 4.3e-14 52.1 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|257386916|ref|YP_003176689.1| - 1.3e-10 41.1 0.0 3.8e-10 39.6 0.0 1.9 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_8 PF13188.1 gi|257386916|ref|YP_003176689.1| - 1.4e-07 31.1 0.3 0.00049 19.8 0.0 3.1 4 0 0 4 4 2 2 PAS domain PAS_11 PF14598.1 gi|257386916|ref|YP_003176689.1| - 8.5e-05 22.4 0.0 0.0012 18.7 0.0 2.2 2 0 0 2 2 2 1 PAS domain PAS_10 PF13596.1 gi|257386916|ref|YP_003176689.1| - 0.00084 19.5 0.0 0.6 10.4 0.0 2.5 2 0 0 2 2 2 2 PAS domain PAS_7 PF12860.2 gi|257386916|ref|YP_003176689.1| - 0.0019 18.2 2.2 0.019 14.9 0.0 3.2 3 1 0 3 3 3 1 PAS fold HisKA PF00512.20 gi|257386916|ref|YP_003176689.1| - 0.0055 16.6 0.3 0.017 15.1 0.2 1.8 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.1 gi|257386916|ref|YP_003176689.1| - 0.025 14.2 0.0 0.051 13.2 0.0 1.5 1 0 0 1 1 1 0 GHKL domain DUF2520 PF10728.4 gi|257386916|ref|YP_003176689.1| - 0.03 13.7 0.8 0.14 11.5 0.4 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF2520) HATPase_c_3 PF13589.1 gi|257386916|ref|YP_003176689.1| - 0.047 13.3 0.0 0.1 12.2 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ROS_MUCR PF05443.6 gi|257386916|ref|YP_003176689.1| - 0.18 11.5 0.8 0.81 9.4 0.1 2.0 1 1 0 2 2 2 0 ROS/MUCR transcriptional regulator protein PGM_PMM_I PF02878.11 gi|257386917|ref|YP_003176690.1| - 2.9e-35 120.7 0.0 5.4e-35 119.8 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|257386917|ref|YP_003176690.1| - 1.1e-28 99.6 0.2 2.6e-28 98.3 0.1 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.15 gi|257386917|ref|YP_003176690.1| - 3.3e-15 55.8 0.1 7.8e-15 54.6 0.1 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain PGM_PMM_III PF02880.11 gi|257386917|ref|YP_003176690.1| - 3.5e-13 49.5 0.0 7.2e-13 48.5 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Spectrin PF00435.16 gi|257386918|ref|YP_003176691.1| - 0.32 11.3 8.2 0.84 9.9 0.7 3.3 3 1 0 3 3 3 0 Spectrin repeat DUF1601 PF07671.6 gi|257386918|ref|YP_003176691.1| - 0.49 10.0 3.2 0.87 9.2 0.2 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF1601) PRA-CH PF01502.13 gi|257386919|ref|YP_003176692.1| - 1.3e-35 120.8 0.2 1.8e-35 120.4 0.2 1.2 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase Arc_PepC_II PF06847.6 gi|257386920|ref|YP_003176693.1| - 6.8e-12 45.6 0.0 1.3e-11 44.7 0.0 1.4 1 0 0 1 1 1 1 Archaeal Peptidase A24 C-terminus Type II Peptidase_A24 PF01478.13 gi|257386920|ref|YP_003176693.1| - 1.1e-06 28.7 8.2 1.1e-06 28.7 5.7 1.6 2 0 0 2 2 2 1 Type IV leader peptidase family Fer2 PF00111.22 gi|257386921|ref|YP_003176694.1| - 2.3e-15 56.1 0.4 3.6e-15 55.4 0.3 1.3 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.1 gi|257386921|ref|YP_003176694.1| - 0.045 13.5 0.1 0.084 12.6 0.1 1.5 1 1 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.1 gi|257386921|ref|YP_003176694.1| - 0.098 12.4 0.1 0.13 12.1 0.1 1.2 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain PHO4 PF01384.15 gi|257386922|ref|YP_003176695.1| - 1.1e-61 208.3 29.9 1.1e-61 208.3 20.7 1.4 2 0 0 2 2 2 1 Phosphate transporter family MCPsignal PF00015.16 gi|257386923|ref|YP_003176696.1| - 2e-05 24.2 13.1 2e-05 24.2 9.0 2.0 1 1 1 2 2 2 1 Methyl-accepting chemotaxis protein (MCP) signalling domain Spc7 PF08317.6 gi|257386923|ref|YP_003176696.1| - 5.9e-05 21.8 7.2 7.3e-05 21.5 5.0 1.0 1 0 0 1 1 1 1 Spc7 kinetochore protein DUF948 PF06103.6 gi|257386923|ref|YP_003176696.1| - 0.00016 21.4 6.0 0.00016 21.4 4.2 2.6 3 1 0 3 3 2 1 Bacterial protein of unknown function (DUF948) Exonuc_VII_S PF02609.11 gi|257386923|ref|YP_003176696.1| - 0.006 16.3 1.7 0.006 16.3 1.1 2.6 2 1 1 3 3 3 1 Exonuclease VII small subunit Laminin_II PF06009.7 gi|257386923|ref|YP_003176696.1| - 0.007 16.1 4.8 0.007 16.1 3.3 2.2 1 1 1 2 2 2 2 Laminin Domain II DUF3359 PF11839.3 gi|257386923|ref|YP_003176696.1| - 0.013 15.7 12.4 0.013 15.7 8.6 2.4 1 1 1 2 2 1 0 Protein of unknown function (DUF3359) Sec8_exocyst PF04048.9 gi|257386923|ref|YP_003176696.1| - 0.016 14.8 1.7 0.16 11.5 0.6 2.1 1 1 1 2 2 2 0 Sec8 exocyst complex component specific domain ISG65-75 PF11727.3 gi|257386923|ref|YP_003176696.1| - 0.072 12.1 19.8 0.062 12.3 12.7 1.4 1 1 0 1 1 1 0 Invariant surface glycoprotein IncA PF04156.9 gi|257386923|ref|YP_003176696.1| - 0.088 12.4 14.9 0.33 10.5 10.3 1.9 1 1 0 1 1 1 0 IncA protein AAA_13 PF13166.1 gi|257386923|ref|YP_003176696.1| - 0.094 11.1 8.9 0.12 10.8 6.2 1.0 1 0 0 1 1 1 0 AAA domain Reo_sigmaC PF04582.7 gi|257386923|ref|YP_003176696.1| - 0.13 11.3 1.3 0.17 11.0 0.9 1.2 1 0 0 1 1 1 0 Reovirus sigma C capsid protein DUF3584 PF12128.3 gi|257386923|ref|YP_003176696.1| - 0.14 9.4 13.4 0.2 8.9 9.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) WEMBL PF05701.6 gi|257386923|ref|YP_003176696.1| - 0.17 10.3 26.9 0.26 9.7 7.6 2.0 1 1 1 2 2 2 0 Weak chloroplast movement under blue light Borrelia_P83 PF05262.6 gi|257386923|ref|YP_003176696.1| - 0.23 9.6 15.7 0.31 9.2 10.9 1.1 1 0 0 1 1 1 0 Borrelia P83/100 protein CorA PF01544.13 gi|257386923|ref|YP_003176696.1| - 0.24 10.4 0.8 0.37 9.7 0.6 1.3 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein BLOC1_2 PF10046.4 gi|257386923|ref|YP_003176696.1| - 0.31 11.2 6.4 0.26 11.4 1.0 2.2 2 0 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 AF0941-like PF14591.1 gi|257386923|ref|YP_003176696.1| - 0.31 11.0 12.3 1.2 9.1 3.7 2.4 1 1 1 2 2 2 0 AF0941-like Mod_r PF07200.8 gi|257386923|ref|YP_003176696.1| - 0.35 10.7 5.4 0.6 10.0 3.2 1.7 1 1 0 1 1 1 0 Modifier of rudimentary (Mod(r)) protein Syntaxin-6_N PF09177.6 gi|257386923|ref|YP_003176696.1| - 0.37 11.2 11.2 1.1 9.7 2.2 2.2 1 1 1 2 2 2 0 Syntaxin 6, N-terminal DUF4446 PF14584.1 gi|257386923|ref|YP_003176696.1| - 0.44 10.3 4.7 0.21 11.3 0.3 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF4446) SNARE PF05739.14 gi|257386923|ref|YP_003176696.1| - 0.45 10.2 11.2 0.98 9.1 1.9 3.1 1 1 1 2 2 2 0 SNARE domain TMP_2 PF06791.8 gi|257386923|ref|YP_003176696.1| - 0.48 10.0 16.6 1.9 8.0 11.3 2.0 1 1 0 1 1 1 0 Prophage tail length tape measure protein GTPase_Cys_C PF12631.2 gi|257386923|ref|YP_003176696.1| - 0.67 10.3 8.4 0.46 10.9 2.6 2.3 1 1 0 2 2 2 0 Catalytic cysteine-containing C-terminus of GTPase, MnmE DUF1664 PF07889.7 gi|257386923|ref|YP_003176696.1| - 0.71 9.6 10.7 0.32 10.8 1.7 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) TMF_DNA_bd PF12329.3 gi|257386923|ref|YP_003176696.1| - 0.81 9.5 15.1 0.15 11.9 3.9 2.3 2 0 0 2 2 2 0 TATA element modulatory factor 1 DNA binding DUF3347 PF11827.3 gi|257386923|ref|YP_003176696.1| - 0.87 9.5 9.4 1.2 9.0 6.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3347) DUF1469 PF07332.6 gi|257386923|ref|YP_003176696.1| - 1.1 8.9 12.1 1.3 8.7 7.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF1469) Peripla_BP_2 PF01497.13 gi|257386923|ref|YP_003176696.1| - 1.3 8.1 17.7 0.28 10.2 5.0 2.2 1 1 1 2 2 2 0 Periplasmic binding protein Mitofilin PF09731.4 gi|257386923|ref|YP_003176696.1| - 1.3 7.5 21.0 1.9 7.0 14.6 1.1 1 0 0 1 1 1 0 Mitochondrial inner membrane protein TMPIT PF07851.8 gi|257386923|ref|YP_003176696.1| - 1.6 7.7 3.2 1.3 7.9 1.3 1.5 1 1 0 1 1 1 0 TMPIT-like protein Transposase_22 PF02994.9 gi|257386923|ref|YP_003176696.1| - 1.6 7.1 8.8 2.4 6.5 6.1 1.2 1 0 0 1 1 1 0 L1 transposable element WXG100 PF06013.7 gi|257386923|ref|YP_003176696.1| - 1.6 8.7 10.9 3.9 7.5 2.6 3.4 1 1 2 3 3 3 0 Proteins of 100 residues with WXG Lebercilin PF15619.1 gi|257386923|ref|YP_003176696.1| - 2.3 7.5 8.6 5.5 6.3 6.0 1.5 1 1 0 1 1 1 0 Ciliary protein causing Leber congenital amaurosis disease DUF3407 PF11887.3 gi|257386923|ref|YP_003176696.1| - 2.4 7.3 7.3 3.2 6.9 3.7 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3407) DivIVA PF05103.8 gi|257386923|ref|YP_003176696.1| - 2.4 8.2 21.6 3.7 7.5 6.1 2.3 1 1 1 2 2 2 0 DivIVA protein COG2 PF06148.6 gi|257386923|ref|YP_003176696.1| - 3.3 7.5 9.8 0.63 9.9 1.7 2.6 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF1423 PF07227.6 gi|257386923|ref|YP_003176696.1| - 4.2 5.9 11.6 5.2 5.6 8.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1423) DivIC PF04977.10 gi|257386923|ref|YP_003176696.1| - 4.2 6.9 6.1 0.97 8.9 0.4 2.4 1 1 2 3 3 3 0 Septum formation initiator SlyX PF04102.7 gi|257386923|ref|YP_003176696.1| - 4.9 7.5 7.6 17 5.8 0.1 2.9 1 1 2 3 3 3 0 SlyX FlgN PF05130.7 gi|257386923|ref|YP_003176696.1| - 5.2 7.3 11.3 42 4.3 7.8 2.0 1 1 0 1 1 1 0 FlgN protein Flagellin_N PF00669.15 gi|257386923|ref|YP_003176696.1| - 5.2 6.8 10.2 7 6.4 2.4 2.6 1 1 1 2 2 2 0 Bacterial flagellin N-terminal helical region FH2 PF02181.18 gi|257386923|ref|YP_003176696.1| - 5.2 5.8 6.5 9.9 4.9 4.5 1.4 1 1 0 1 1 1 0 Formin Homology 2 Domain PilJ PF13675.1 gi|257386923|ref|YP_003176696.1| - 5.3 7.4 7.1 13 6.1 4.9 1.8 1 1 0 1 1 1 0 Type IV pili methyl-accepting chemotaxis transducer N-term DUF1993 PF09351.5 gi|257386923|ref|YP_003176696.1| - 8.7 6.2 11.1 23 4.8 7.7 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF1993) His_biosynth PF00977.16 gi|257386924|ref|YP_003176697.1| - 9.8e-75 250.7 4.8 1.1e-74 250.5 3.3 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein DHO_dh PF01180.16 gi|257386924|ref|YP_003176697.1| - 1.8e-12 46.8 1.3 9.1e-08 31.3 0.1 2.1 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase Dus PF01207.12 gi|257386924|ref|YP_003176697.1| - 2.1e-12 46.4 0.3 5.4e-06 25.4 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) PcrB PF01884.12 gi|257386924|ref|YP_003176697.1| - 1.3e-08 34.3 8.7 0.00021 20.6 0.3 2.9 1 1 1 3 3 3 2 PcrB family NMO PF03060.10 gi|257386924|ref|YP_003176697.1| - 2.5e-07 30.1 2.1 2.5e-07 30.1 1.5 2.1 2 0 0 2 2 2 1 Nitronate monooxygenase IGPS PF00218.16 gi|257386924|ref|YP_003176697.1| - 3.1e-06 26.4 0.6 0.00091 18.3 0.0 2.8 2 2 1 3 3 3 2 Indole-3-glycerol phosphate synthase Trp_syntA PF00290.15 gi|257386924|ref|YP_003176697.1| - 3.2e-06 25.8 0.9 0.013 14.0 0.1 2.2 2 0 0 2 2 2 2 Tryptophan synthase alpha chain ThiG PF05690.9 gi|257386924|ref|YP_003176697.1| - 9e-06 24.9 6.1 0.018 14.1 0.3 2.2 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG NanE PF04131.9 gi|257386924|ref|YP_003176697.1| - 5.2e-05 22.3 1.3 0.014 14.3 0.2 2.3 2 0 0 2 2 2 2 Putative N-acetylmannosamine-6-phosphate epimerase TMP-TENI PF02581.12 gi|257386924|ref|YP_003176697.1| - 0.00023 20.3 1.6 0.00092 18.3 0.1 2.1 2 0 0 2 2 2 1 Thiamine monophosphate synthase/TENI IMPDH PF00478.20 gi|257386924|ref|YP_003176697.1| - 0.0012 17.8 3.1 0.012 14.4 0.2 2.1 2 0 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain G3P_antiterm PF04309.7 gi|257386924|ref|YP_003176697.1| - 0.0019 17.2 1.8 0.008 15.2 0.2 2.1 2 0 0 2 2 2 1 Glycerol-3-phosphate responsive antiterminator FMN_dh PF01070.13 gi|257386924|ref|YP_003176697.1| - 0.0065 15.3 14.4 0.028 13.2 1.5 2.1 2 0 0 2 2 2 2 FMN-dependent dehydrogenase Ribul_P_3_epim PF00834.14 gi|257386924|ref|YP_003176697.1| - 0.021 13.9 3.7 0.048 12.7 0.2 2.3 2 0 0 2 2 2 0 Ribulose-phosphate 3 epimerase family PA PF02225.17 gi|257386924|ref|YP_003176697.1| - 0.027 14.1 1.2 0.93 9.2 0.5 2.3 1 1 1 2 2 2 0 PA domain B12-binding PF02310.14 gi|257386924|ref|YP_003176697.1| - 0.054 13.3 6.6 2.9 7.7 0.8 2.7 1 1 0 2 2 2 0 B12 binding domain Regulator_TrmB PF11495.3 gi|257386925|ref|YP_003176698.1| - 7e-36 123.3 0.0 9e-36 123.0 0.0 1.1 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.14 gi|257386925|ref|YP_003176698.1| - 9.4e-15 54.0 0.0 1.9e-14 53.1 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.15 gi|257386925|ref|YP_003176698.1| - 0.0014 18.7 0.2 0.31 11.1 0.0 2.5 2 0 0 2 2 2 1 Transcriptional regulator HTH_IclR PF09339.5 gi|257386925|ref|YP_003176698.1| - 0.014 14.9 0.0 0.043 13.4 0.0 1.8 1 0 0 1 1 1 0 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|257386925|ref|YP_003176698.1| - 0.029 14.0 0.1 0.098 12.3 0.1 1.9 1 0 0 1 1 1 0 MarR family HTH_23 PF13384.1 gi|257386925|ref|YP_003176698.1| - 0.092 12.4 0.1 0.54 9.9 0.1 2.2 2 0 0 2 2 2 0 Homeodomain-like domain GntR PF00392.16 gi|257386925|ref|YP_003176698.1| - 0.19 11.1 1.5 16 4.9 0.0 3.3 3 0 0 3 3 3 0 Bacterial regulatory proteins, gntR family MFS_1 PF07690.11 gi|257386926|ref|YP_003176699.1| - 5.3e-30 104.3 51.0 3.5e-19 68.7 17.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF1228 PF06779.9 gi|257386926|ref|YP_003176699.1| - 4.5e-05 23.4 1.3 4.5e-05 23.4 0.9 3.6 4 0 0 4 4 4 1 Protein of unknown function (DUF1228) DUF1469 PF07332.6 gi|257386927|ref|YP_003176700.1| - 0.051 13.3 2.1 0.056 13.1 1.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) IGPD PF00475.13 gi|257386928|ref|YP_003176701.1| - 3e-63 212.0 1.6 4.6e-63 211.4 1.1 1.3 1 0 0 1 1 1 1 Imidazoleglycerol-phosphate dehydratase ACT PF01842.20 gi|257386929|ref|YP_003176702.1| - 0.002 17.5 1.6 0.003 17.0 0.3 2.1 2 1 0 2 2 2 1 ACT domain ACT_7 PF13840.1 gi|257386929|ref|YP_003176702.1| - 0.0038 16.7 0.1 0.008 15.6 0.0 1.5 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.1 gi|257386929|ref|YP_003176702.1| - 0.0043 17.3 1.0 0.16 12.2 0.2 2.7 2 1 0 2 2 2 1 ACT domain Virul_fac_BrkB PF03631.10 gi|257386930|ref|YP_003176703.1| - 1e-39 136.4 21.0 1.2e-39 136.2 14.6 1.0 1 0 0 1 1 1 1 Virulence factor BrkB TetR_N PF00440.18 gi|257386931|ref|YP_003176704.1| - 0.025 14.2 0.0 0.051 13.2 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family adh_short PF00106.20 gi|257386932|ref|YP_003176705.1| - 4.5e-17 62.4 2.5 7e-17 61.8 1.7 1.3 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|257386932|ref|YP_003176705.1| - 3.2e-09 36.6 1.2 4.2e-09 36.3 0.8 1.3 1 0 0 1 1 1 1 KR domain adh_short_C2 PF13561.1 gi|257386932|ref|YP_003176705.1| - 1.9e-05 24.5 0.0 2.8e-05 23.9 0.0 1.2 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase Epimerase PF01370.16 gi|257386932|ref|YP_003176705.1| - 0.00013 21.5 0.1 0.00015 21.2 0.1 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|257386932|ref|YP_003176705.1| - 0.0044 17.0 1.3 0.0077 16.2 0.9 1.5 1 1 0 1 1 1 1 NADH(P)-binding Shikimate_DH PF01488.15 gi|257386932|ref|YP_003176705.1| - 0.13 12.3 0.1 0.43 10.6 0.0 1.8 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase Glyco_trans_4_4 PF13579.1 gi|257386932|ref|YP_003176705.1| - 1.4 8.9 13.1 1 9.4 3.2 2.6 1 1 1 2 2 2 0 Glycosyl transferase 4-like domain ABC2_membrane_3 PF12698.2 gi|257386933|ref|YP_003176706.1| - 0.00017 20.7 15.1 0.00017 20.7 10.5 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|257386933|ref|YP_003176706.1| - 0.00043 19.5 20.1 0.0097 15.0 14.0 2.0 1 1 0 1 1 1 1 ABC-2 family transporter protein TPPK_C PF12555.3 gi|257386933|ref|YP_003176706.1| - 0.5 10.1 7.3 1.3 8.8 0.1 2.8 2 0 0 2 2 2 0 Thiamine pyrophosphokinase C terminal DUF3767 PF12597.3 gi|257386933|ref|YP_003176706.1| - 0.55 9.9 2.1 0.86 9.2 0.2 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3767) ABC2_membrane_2 PF12679.2 gi|257386933|ref|YP_003176706.1| - 2.2 7.0 17.4 1.3 7.8 10.3 1.9 1 1 0 1 1 1 0 ABC-2 family transporter protein DUF2874 PF11396.3 gi|257386934|ref|YP_003176707.1| - 0.0048 16.8 0.0 0.13 12.2 0.0 2.4 2 1 0 2 2 2 1 Protein of unknown function (DUF2874) DDE_Tnp_IS1595 PF12762.2 gi|257386935|ref|YP_003176708.1| - 1.1e-23 83.7 0.0 1.5e-23 83.2 0.0 1.2 1 0 0 1 1 1 1 ISXO2-like transposase domain Zn_Tnp_IS1595 PF12760.2 gi|257386935|ref|YP_003176708.1| - 4e-10 39.3 0.9 8.8e-10 38.2 0.6 1.6 1 0 0 1 1 1 1 Transposase zinc-ribbon domain DUF2089 PF09862.4 gi|257386935|ref|YP_003176708.1| - 4.5e-06 26.4 0.0 6.5e-06 25.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2089) Zn_Tnp_IS1 PF03811.8 gi|257386935|ref|YP_003176708.1| - 0.00014 21.2 3.9 0.00045 19.6 2.7 1.8 1 0 0 1 1 1 1 InsA N-terminal domain HTH_23 PF13384.1 gi|257386935|ref|YP_003176708.1| - 0.0023 17.5 0.0 0.0077 15.8 0.0 1.9 1 0 0 1 1 1 1 Homeodomain-like domain ADK_lid PF05191.9 gi|257386935|ref|YP_003176708.1| - 0.014 15.0 0.1 0.014 15.0 0.1 2.1 2 0 0 2 2 2 0 Adenylate kinase, active site lid HTH_29 PF13551.1 gi|257386935|ref|YP_003176708.1| - 0.032 14.3 0.0 0.14 12.3 0.0 2.0 2 0 0 2 2 2 0 Winged helix-turn helix HTH_28 PF13518.1 gi|257386935|ref|YP_003176708.1| - 0.035 14.1 0.1 0.22 11.5 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain Prok-RING_1 PF14446.1 gi|257386935|ref|YP_003176708.1| - 0.042 13.5 0.3 1.2 8.8 0.0 2.2 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 zinc-ribbons_6 PF07191.7 gi|257386935|ref|YP_003176708.1| - 0.052 13.3 0.1 0.1 12.3 0.1 1.5 1 0 0 1 1 1 0 zinc-ribbons Zn-ribbon_8 PF09723.5 gi|257386935|ref|YP_003176708.1| - 0.054 13.4 2.1 11 6.1 0.3 2.7 2 0 0 2 2 2 0 Zinc ribbon domain HTH_11 PF08279.7 gi|257386935|ref|YP_003176708.1| - 0.071 12.7 0.0 0.14 11.8 0.0 1.5 1 0 0 1 1 1 0 HTH domain GerE PF00196.14 gi|257386935|ref|YP_003176708.1| - 0.076 12.3 0.0 0.19 11.0 0.0 1.6 2 0 0 2 2 1 0 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.7 gi|257386935|ref|YP_003176708.1| - 0.082 12.3 0.0 0.25 10.8 0.0 1.8 1 0 0 1 1 1 0 Sigma-70, region 4 zf-C4_Topoisom PF01396.14 gi|257386935|ref|YP_003176708.1| - 0.094 12.2 1.0 0.19 11.2 0.7 1.5 1 0 0 1 1 1 0 Topoisomerase DNA binding C4 zinc finger HNH_5 PF14279.1 gi|257386935|ref|YP_003176708.1| - 0.096 12.6 0.1 0.21 11.6 0.0 1.6 1 0 0 1 1 1 0 HNH endonuclease zf-C2HC_2 PF13913.1 gi|257386935|ref|YP_003176708.1| - 0.11 12.1 0.6 0.11 12.1 0.4 2.4 2 0 0 2 2 2 0 zinc-finger of a C2HC-type Auxin_inducible PF02519.9 gi|257386935|ref|YP_003176708.1| - 0.13 12.2 0.0 0.25 11.4 0.0 1.4 1 0 0 1 1 1 0 Auxin responsive protein zf-Dof PF02701.10 gi|257386935|ref|YP_003176708.1| - 0.17 11.8 3.9 0.33 10.9 2.7 1.4 1 0 0 1 1 1 0 Dof domain, zinc finger zf-ISL3 PF14690.1 gi|257386935|ref|YP_003176708.1| - 0.46 10.5 5.1 9.9 6.2 0.1 2.8 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-C2H2_6 PF13912.1 gi|257386935|ref|YP_003176708.1| - 0.72 9.8 4.2 0.44 10.5 0.2 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger Zn_ribbon_recom PF13408.1 gi|257386935|ref|YP_003176708.1| - 2.3 8.5 5.6 5.9 7.2 3.9 1.8 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain ABC_tran PF00005.22 gi|257386936|ref|YP_003176709.1| - 9.6e-30 103.6 0.0 1.5e-29 103.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|257386936|ref|YP_003176709.1| - 1.9e-14 54.3 0.7 3.5e-09 37.0 0.0 2.1 1 1 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|257386936|ref|YP_003176709.1| - 0.00014 21.1 1.5 0.11 11.7 0.2 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|257386936|ref|YP_003176709.1| - 0.0004 19.5 0.0 0.024 13.6 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_23 PF13476.1 gi|257386936|ref|YP_003176709.1| - 0.00065 20.0 0.1 0.0012 19.2 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|257386936|ref|YP_003176709.1| - 0.00089 18.7 0.3 0.0017 17.8 0.2 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|257386936|ref|YP_003176709.1| - 0.0079 15.6 0.2 0.045 13.1 0.1 2.2 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|257386936|ref|YP_003176709.1| - 0.012 15.8 2.0 0.14 12.3 1.4 2.4 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) UPF0079 PF02367.12 gi|257386936|ref|YP_003176709.1| - 0.013 15.1 0.0 0.031 13.9 0.0 1.6 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 Arch_ATPase PF01637.13 gi|257386936|ref|YP_003176709.1| - 0.018 14.7 0.0 0.029 14.0 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase AAA_19 PF13245.1 gi|257386936|ref|YP_003176709.1| - 0.026 14.2 0.2 0.057 13.1 0.1 1.6 1 0 0 1 1 1 0 Part of AAA domain AAA_17 PF13207.1 gi|257386936|ref|YP_003176709.1| - 0.049 14.4 0.3 0.14 12.9 0.2 2.0 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.17 gi|257386936|ref|YP_003176709.1| - 0.05 13.0 0.0 0.085 12.2 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_16 PF13191.1 gi|257386936|ref|YP_003176709.1| - 0.084 12.8 0.1 0.15 12.0 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain NTPase_1 PF03266.10 gi|257386936|ref|YP_003176709.1| - 0.12 12.1 0.9 0.77 9.4 0.0 2.1 2 0 0 2 2 2 0 NTPase DUF258 PF03193.11 gi|257386936|ref|YP_003176709.1| - 0.14 11.3 0.0 0.22 10.6 0.0 1.5 1 1 0 1 1 1 0 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|257386936|ref|YP_003176709.1| - 0.35 10.9 3.5 5.6 7.1 2.5 2.1 1 1 0 1 1 1 0 AAA domain AIG1 PF04548.11 gi|257386936|ref|YP_003176709.1| - 0.42 9.6 4.4 2.4 7.1 0.2 2.2 2 0 0 2 2 2 0 AIG1 family cobW PF02492.14 gi|257386936|ref|YP_003176709.1| - 1.5 8.2 4.7 1.1 8.7 0.3 2.1 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain NB-ARC PF00931.17 gi|257386936|ref|YP_003176709.1| - 1.5 7.5 4.5 0.44 9.3 0.1 1.9 2 0 0 2 2 2 0 NB-ARC domain Fer2 PF00111.22 gi|257386939|ref|YP_003176712.1| - 5.7e-07 29.2 0.4 9.9e-07 28.4 0.3 1.4 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.1 gi|257386939|ref|YP_003176712.1| - 0.0098 15.6 0.3 0.019 14.7 0.2 1.5 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain UPF0029 PF01205.14 gi|257386940|ref|YP_003176713.1| - 1.9e-34 117.6 0.0 2.5e-34 117.2 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein family UPF0029 DUF1949 PF09186.6 gi|257386940|ref|YP_003176713.1| - 2.7e-12 46.0 0.3 7e-12 44.7 0.1 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF1949) EFG_C PF00679.19 gi|257386940|ref|YP_003176713.1| - 0.0026 17.5 0.0 0.0058 16.4 0.0 1.6 1 0 0 1 1 1 1 Elongation factor G C-terminus UPRTase PF14681.1 gi|257386941|ref|YP_003176714.1| - 2.7e-56 190.0 0.0 3.1e-56 189.8 0.0 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.22 gi|257386941|ref|YP_003176714.1| - 1.1e-07 31.6 0.2 1.7e-07 30.9 0.1 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain Trypan_PARP PF05887.6 gi|257386942|ref|YP_003176715.1| - 0.049 13.4 2.4 0.052 13.3 1.7 1.1 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) TAT_signal PF10518.4 gi|257386942|ref|YP_003176715.1| - 0.11 12.5 0.2 0.11 12.5 0.1 2.0 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence NOA36 PF06524.7 gi|257386942|ref|YP_003176715.1| - 2.9 7.0 4.8 3 7.0 3.3 1.0 1 0 0 1 1 1 0 NOA36 protein DctM PF06808.7 gi|257386943|ref|YP_003176716.1| - 6.5e-82 275.3 56.2 4.2e-53 180.3 17.0 3.1 3 1 0 3 3 3 2 DctM-like transporters DUF1850 PF08905.6 gi|257386944|ref|YP_003176717.1| - 2.5e-22 78.4 0.0 3.8e-22 77.9 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1850) NMT1 PF09084.6 gi|257386945|ref|YP_003176718.1| - 4.3e-08 33.0 2.4 1.6e-07 31.1 0.4 2.4 2 1 0 2 2 2 1 NMT1/THI5 like Phosphonate-bd PF12974.2 gi|257386945|ref|YP_003176718.1| - 8.4e-08 31.8 4.7 1.7e-07 30.9 3.3 1.4 1 1 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein NMT1_2 PF13379.1 gi|257386945|ref|YP_003176718.1| - 0.00022 20.7 1.0 0.0008 18.8 0.6 1.8 1 1 0 1 1 1 1 NMT1-like family SBP_bac_3 PF00497.15 gi|257386945|ref|YP_003176718.1| - 0.012 14.8 1.0 0.069 12.3 0.1 2.1 1 1 1 2 2 2 0 Bacterial extracellular solute-binding proteins, family 3 TAT_signal PF10518.4 gi|257386945|ref|YP_003176718.1| - 0.52 10.4 3.3 2 8.6 2.3 1.9 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence PKD PF00801.15 gi|257386947|ref|YP_003176720.1| - 7.6e-17 60.8 9.8 7.6e-17 60.8 6.8 2.6 1 1 1 2 2 2 1 PKD domain CBM_5_12 PF02839.9 gi|257386947|ref|YP_003176720.1| - 6e-12 44.9 8.4 1.6e-11 43.5 5.8 1.8 1 0 0 1 1 1 1 Carbohydrate binding domain Glyco_hydro_18 PF00704.23 gi|257386947|ref|YP_003176720.1| - 6.4e-06 25.8 4.9 0.0012 18.3 0.0 2.6 2 1 1 3 3 3 2 Glycosyl hydrolases family 18 CBM_5_12_2 PF14600.1 gi|257386947|ref|YP_003176720.1| - 9.1e-06 25.2 2.1 3.9e-05 23.1 1.5 2.2 1 0 0 1 1 1 1 Cellulose-binding domain PHO4 PF01384.15 gi|257386948|ref|YP_003176721.1| - 2e-42 145.0 25.9 2e-42 145.0 17.9 1.6 1 1 1 2 2 2 1 Phosphate transporter family DUF21 PF01595.15 gi|257386949|ref|YP_003176722.1| - 1.1e-52 178.0 1.0 1.6e-52 177.4 0.7 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF21 CorC_HlyC PF03471.12 gi|257386949|ref|YP_003176722.1| - 3.7e-20 71.5 2.1 8.6e-20 70.3 1.4 1.7 1 0 0 1 1 1 1 Transporter associated domain CBS PF00571.23 gi|257386949|ref|YP_003176722.1| - 7.5e-19 67.2 2.2 1.7e-08 34.1 0.0 2.7 2 0 0 2 2 2 2 CBS domain PHB_acc_N PF07879.6 gi|257386949|ref|YP_003176722.1| - 0.27 11.0 1.6 5.4 6.8 0.1 2.9 3 0 0 3 3 3 0 PHB/PHA accumulation regulator DNA-binding domain GST_N_3 PF13417.1 gi|257386950|ref|YP_003176723.1| - 4.8e-15 55.5 0.0 5.7e-15 55.2 0.0 1.0 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Glutaredoxin PF00462.19 gi|257386950|ref|YP_003176723.1| - 9.2e-13 47.9 0.1 1.2e-12 47.5 0.1 1.2 1 0 0 1 1 1 1 Glutaredoxin GST_N_2 PF13409.1 gi|257386950|ref|YP_003176723.1| - 3.5e-12 46.1 0.0 4.1e-12 45.9 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N PF02798.15 gi|257386950|ref|YP_003176723.1| - 3.7e-05 23.7 0.0 4.5e-05 23.5 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain DUF836 PF05768.9 gi|257386950|ref|YP_003176723.1| - 0.0056 16.9 0.1 0.0074 16.5 0.1 1.3 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Prok-RING_4 PF14447.1 gi|257386950|ref|YP_003176723.1| - 0.12 11.9 0.0 0.22 11.0 0.0 1.5 1 0 0 1 1 1 0 Prokaryotic RING finger family 4 AhpC-TSA PF00578.16 gi|257386951|ref|YP_003176724.1| - 4e-16 58.8 0.0 4.9e-16 58.5 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|257386951|ref|YP_003176724.1| - 0.00012 21.6 0.0 0.00063 19.3 0.0 1.9 1 1 0 1 1 1 1 Redoxin Sua5_yciO_yrdC PF01300.13 gi|257386952|ref|YP_003176725.1| - 4.3e-51 172.6 0.0 4.9e-51 172.4 0.0 1.0 1 0 0 1 1 1 1 Telomere recombination DUF2073 PF09846.4 gi|257386952|ref|YP_003176725.1| - 0.0024 17.5 0.0 0.004 16.7 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2073) Cas_Cas4 PF01930.12 gi|257386953|ref|YP_003176726.1| - 0.00097 19.0 0.0 0.007 16.3 0.0 1.9 2 0 0 2 2 2 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.2 gi|257386953|ref|YP_003176726.1| - 0.43 9.9 2.4 1.8 7.9 0.5 2.1 2 1 0 2 2 2 0 PD-(D/E)XK nuclease superfamily Polysacc_deac_1 PF01522.16 gi|257386954|ref|YP_003176727.1| - 1.2e-15 57.2 0.1 3.3e-12 46.1 0.0 2.2 2 0 0 2 2 2 2 Polysaccharide deacetylase Hjc PF01870.13 gi|257386955|ref|YP_003176728.1| - 1.1e-26 92.2 0.0 1.4e-26 91.8 0.0 1.2 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) 7TM-7TMR_HD PF07698.6 gi|257386956|ref|YP_003176729.1| - 0.0084 15.5 2.1 0.01 15.2 1.4 1.0 1 0 0 1 1 1 1 7TM receptor with intracellular HD hydrolase DUF2627 PF11118.3 gi|257386956|ref|YP_003176729.1| - 0.022 14.8 0.2 0.025 14.6 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2627) PepSY_TM_3 PF13706.1 gi|257386956|ref|YP_003176729.1| - 5.6 6.4 8.4 1.3 8.5 0.2 2.2 2 0 0 2 2 2 0 PepSY-associated TM helix TetR_C_6 PF13977.1 gi|257386957|ref|YP_003176730.1| - 1.3e-10 41.3 1.5 2.2e-10 40.5 1.1 1.5 1 0 0 1 1 1 1 Bacterial transcriptional repressor TetR_N PF00440.18 gi|257386957|ref|YP_003176730.1| - 3.7e-09 36.0 0.0 7.2e-09 35.1 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family UPF0122 PF04297.9 gi|257386957|ref|YP_003176730.1| - 0.094 12.7 0.2 0.16 12.0 0.1 1.3 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_Tnp_1_2 PF13022.1 gi|257386957|ref|YP_003176730.1| - 0.11 12.2 0.0 0.19 11.5 0.0 1.5 2 0 0 2 2 2 0 Helix-turn-helix of insertion element transposase DUF2237 PF09996.4 gi|257386958|ref|YP_003176731.1| - 1.5e-47 159.8 0.0 2.3e-47 159.2 0.0 1.3 1 1 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2237) Methyltransf_31 PF13847.1 gi|257386959|ref|YP_003176732.1| - 2.1e-22 79.3 0.0 2.6e-22 79.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|257386959|ref|YP_003176732.1| - 2.2e-18 66.4 0.1 3.6e-18 65.8 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|257386959|ref|YP_003176732.1| - 3.6e-17 62.9 0.4 1.9e-16 60.6 0.2 2.0 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|257386959|ref|YP_003176732.1| - 9.9e-16 58.0 0.0 1.8e-15 57.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|257386959|ref|YP_003176732.1| - 2e-14 53.6 0.0 2.8e-14 53.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|257386959|ref|YP_003176732.1| - 4.1e-11 43.1 0.2 1.1e-10 41.7 0.1 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|257386959|ref|YP_003176732.1| - 6.9e-10 38.9 1.0 6.9e-10 38.9 0.7 1.9 1 1 1 2 2 2 1 Methyltransferase domain PCMT PF01135.14 gi|257386959|ref|YP_003176732.1| - 4.3e-09 36.2 0.0 6e-09 35.7 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.9 gi|257386959|ref|YP_003176732.1| - 7.4e-09 35.2 0.0 1.1e-08 34.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Ubie_methyltran PF01209.13 gi|257386959|ref|YP_003176732.1| - 1.2e-08 34.3 0.0 1.7e-08 33.8 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_32 PF13679.1 gi|257386959|ref|YP_003176732.1| - 3.7e-06 26.6 0.0 5.1e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain DREV PF05219.7 gi|257386959|ref|YP_003176732.1| - 0.00018 20.4 0.0 0.00026 19.9 0.0 1.1 1 0 0 1 1 1 1 DREV methyltransferase NodS PF05401.6 gi|257386959|ref|YP_003176732.1| - 0.00067 19.1 0.0 0.0017 17.7 0.0 1.6 2 0 0 2 2 2 1 Nodulation protein S (NodS) CMAS PF02353.15 gi|257386959|ref|YP_003176732.1| - 0.00075 18.6 0.0 0.00098 18.2 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MetW PF07021.7 gi|257386959|ref|YP_003176732.1| - 0.0015 17.9 0.0 0.0028 17.0 0.0 1.4 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Fibrillarin PF01269.12 gi|257386959|ref|YP_003176732.1| - 0.0018 17.2 0.1 0.0053 15.6 0.0 1.7 2 0 0 2 2 2 1 Fibrillarin CheR PF01739.13 gi|257386959|ref|YP_003176732.1| - 0.004 16.4 0.0 1.1 8.4 0.1 2.1 1 1 1 2 2 2 2 CheR methyltransferase, SAM binding domain RrnaAD PF00398.15 gi|257386959|ref|YP_003176732.1| - 0.0043 16.1 0.0 0.006 15.6 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase FtsJ PF01728.14 gi|257386959|ref|YP_003176732.1| - 0.0076 16.2 0.0 0.011 15.7 0.0 1.3 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_4 PF02390.12 gi|257386959|ref|YP_003176732.1| - 0.024 13.6 0.0 0.034 13.1 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase PrmA PF06325.8 gi|257386959|ref|YP_003176732.1| - 0.028 13.5 0.2 0.038 13.1 0.2 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_9 PF08003.6 gi|257386959|ref|YP_003176732.1| - 0.047 12.3 0.0 0.074 11.7 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1698) SnoaL_2 PF12680.2 gi|257386959|ref|YP_003176732.1| - 0.063 13.6 2.2 2.4 8.6 0.2 3.1 1 1 1 3 3 3 0 SnoaL-like domain FUSC PF04632.7 gi|257386960|ref|YP_003176733.1| - 0.36 9.2 2.1 0.39 9.0 1.4 1.0 1 0 0 1 1 1 0 Fusaric acid resistance protein family DUF123 PF01986.11 gi|257386961|ref|YP_003176734.1| - 2e-25 88.8 0.0 2.4e-25 88.5 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF123 4HBT PF03061.17 gi|257386962|ref|YP_003176735.1| - 9.7e-17 60.8 0.1 1.3e-16 60.4 0.1 1.2 1 0 0 1 1 1 1 Thioesterase superfamily 4HBT_2 PF13279.1 gi|257386962|ref|YP_003176735.1| - 0.055 13.9 0.0 0.064 13.6 0.0 1.1 1 0 0 1 1 1 0 Thioesterase-like superfamily CcmH PF03918.9 gi|257386963|ref|YP_003176736.1| - 0.045 12.7 0.0 0.059 12.3 0.0 1.1 1 0 0 1 1 1 0 Cytochrome C biogenesis protein Peptidase_M56 PF05569.6 gi|257386963|ref|YP_003176736.1| - 0.12 11.3 0.0 0.12 11.3 0.0 1.0 1 0 0 1 1 1 0 BlaR1 peptidase M56 tRNA-synt_1 PF00133.17 gi|257386964|ref|YP_003176737.1| - 1.2e-63 215.1 0.0 8.5e-25 86.7 0.2 5.0 2 2 2 4 4 4 4 tRNA synthetases class I (I, L, M and V) tRNA-synt_1_2 PF13603.1 gi|257386964|ref|YP_003176737.1| - 1.1e-51 174.7 0.0 1.7e-51 174.1 0.0 1.3 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1g PF09334.6 gi|257386964|ref|YP_003176737.1| - 7.3e-33 113.7 0.0 4.8e-26 91.3 0.0 3.5 4 0 0 4 4 4 2 tRNA synthetases class I (M) Anticodon_1 PF08264.8 gi|257386964|ref|YP_003176737.1| - 5.1e-15 55.5 0.0 9.1e-15 54.7 0.0 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1f PF01921.13 gi|257386964|ref|YP_003176737.1| - 0.00019 20.2 0.0 1.1 7.8 0.0 3.3 4 0 0 4 4 4 2 tRNA synthetases class I (K) tRNA-synt_1e PF01406.14 gi|257386964|ref|YP_003176737.1| - 0.016 14.3 0.0 1.5 7.8 0.0 2.2 2 0 0 2 2 2 0 tRNA synthetases class I (C) catalytic domain DNA_ligase_ZBD PF03119.11 gi|257386964|ref|YP_003176737.1| - 0.067 12.9 2.3 0.25 11.0 0.0 2.9 3 0 0 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain DZR PF12773.2 gi|257386964|ref|YP_003176737.1| - 0.087 12.6 5.2 1.8 8.4 0.1 2.8 2 1 0 2 2 2 0 Double zinc ribbon tRNA-synt_1d PF00750.14 gi|257386964|ref|YP_003176737.1| - 0.31 9.8 0.0 0.61 8.8 0.0 1.4 1 0 0 1 1 1 0 tRNA synthetases class I (R) TF_Zn_Ribbon PF08271.7 gi|257386964|ref|YP_003176737.1| - 0.33 10.2 13.8 3.2 7.1 0.1 4.3 3 1 1 4 4 4 0 TFIIB zinc-binding Nudix_N_2 PF14803.1 gi|257386964|ref|YP_003176737.1| - 4.8 6.9 8.7 13 5.5 0.2 4.2 4 0 0 4 4 4 0 Nudix N-terminal Zn-ribbon_8 PF09723.5 gi|257386964|ref|YP_003176737.1| - 5.2 7.1 7.5 3.1 7.8 0.1 3.6 4 0 0 4 4 4 0 Zinc ribbon domain SQS_PSY PF00494.14 gi|257386965|ref|YP_003176738.1| - 5.7e-42 143.8 2.4 7.4e-42 143.4 1.7 1.1 1 0 0 1 1 1 1 Squalene/phytoene synthase PHO4 PF01384.15 gi|257386966|ref|YP_003176739.1| - 7.3e-39 133.3 30.1 1.1e-38 132.7 20.9 1.3 1 1 0 1 1 1 1 Phosphate transporter family Usp PF00582.21 gi|257386967|ref|YP_003176740.1| - 2e-27 96.1 5.3 1e-26 93.7 3.7 1.8 1 1 0 1 1 1 1 Universal stress protein family NPV_P10 PF05531.7 gi|257386968|ref|YP_003176741.1| - 0.00062 19.9 0.0 0.16 12.2 0.0 2.4 2 0 0 2 2 2 2 Nucleopolyhedrovirus P10 protein FliD_C PF07195.7 gi|257386968|ref|YP_003176741.1| - 0.03 13.6 0.0 0.72 9.0 0.0 2.1 2 0 0 2 2 2 0 Flagellar hook-associated protein 2 C-terminus CbiG_N PF11760.3 gi|257386968|ref|YP_003176741.1| - 0.085 12.5 0.0 1.9 8.2 0.0 2.3 2 0 0 2 2 2 0 Cobalamin synthesis G N-terminal IMP_cyclohyd PF07826.6 gi|257386970|ref|YP_003176743.1| - 2.1e-55 187.1 0.2 3.4e-55 186.5 0.1 1.3 1 1 0 1 1 1 1 IMP cyclohydrolase-like protein NifU PF01106.12 gi|257386971|ref|YP_003176744.1| - 2.2e-10 40.1 0.0 2.8e-10 39.8 0.0 1.2 1 0 0 1 1 1 1 NifU-like domain Phenol_MetA_deg PF13557.1 gi|257386972|ref|YP_003176745.1| - 0.061 13.1 1.3 0.47 10.2 0.0 2.0 1 1 1 2 2 2 0 Putative MetA-pathway of phenol degradation MFS_1 PF07690.11 gi|257386973|ref|YP_003176746.1| - 8.3e-33 113.5 55.8 1.1e-18 67.0 18.9 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|257386973|ref|YP_003176746.1| - 4e-08 32.0 4.8 4e-08 32.0 3.3 3.8 1 1 2 3 3 3 2 MFS/sugar transport protein DUF3112 PF11309.3 gi|257386973|ref|YP_003176746.1| - 0.035 13.9 0.4 0.094 12.4 0.3 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3112) OATP PF03137.15 gi|257386973|ref|YP_003176746.1| - 0.11 10.5 0.4 0.23 9.4 0.3 1.5 1 0 0 1 1 1 0 Organic Anion Transporter Polypeptide (OATP) family Pribosyltran_N PF13793.1 gi|257386974|ref|YP_003176747.1| - 3.5e-19 68.6 0.0 1.3e-18 66.7 0.0 1.9 2 1 0 2 2 2 1 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.22 gi|257386974|ref|YP_003176747.1| - 2.7e-07 30.3 0.9 7.8e-07 28.8 0.6 1.8 1 1 0 1 1 1 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.1 gi|257386974|ref|YP_003176747.1| - 7.6e-07 29.0 0.7 1.4e-06 28.1 0.5 1.4 1 0 0 1 1 1 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.1 gi|257386974|ref|YP_003176747.1| - 6e-05 22.3 0.0 0.0001 21.5 0.0 1.4 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase DUF4349 PF14257.1 gi|257386976|ref|YP_003176749.1| - 3.9e-61 206.5 0.0 6e-61 205.9 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4349) TBPIP PF07106.8 gi|257386976|ref|YP_003176749.1| - 0.0039 16.7 2.8 0.005 16.4 2.0 1.1 1 0 0 1 1 1 1 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Spc7 PF08317.6 gi|257386976|ref|YP_003176749.1| - 0.0065 15.1 1.9 0.0091 14.6 1.3 1.2 1 0 0 1 1 1 1 Spc7 kinetochore protein DUF4140 PF13600.1 gi|257386976|ref|YP_003176749.1| - 0.017 15.5 4.2 0.035 14.5 2.9 1.6 1 0 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) Imm2 PF14426.1 gi|257386976|ref|YP_003176749.1| - 0.045 13.7 3.3 1.6 8.7 0.5 3.4 3 0 0 3 3 3 0 Immunity protein Imm2 FUSC PF04632.7 gi|257386976|ref|YP_003176749.1| - 0.066 11.6 0.1 0.21 10.0 0.0 1.7 2 0 0 2 2 2 0 Fusaric acid resistance protein family HOOK PF05622.7 gi|257386976|ref|YP_003176749.1| - 0.11 10.3 5.2 0.14 9.9 3.6 1.0 1 0 0 1 1 1 0 HOOK protein DUF61 PF01886.11 gi|257386976|ref|YP_003176749.1| - 0.11 12.3 0.2 0.17 11.7 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function DUF61 DUF4208 PF13907.1 gi|257386976|ref|YP_003176749.1| - 0.11 12.6 0.3 0.19 11.9 0.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4208) V_ATPase_I PF01496.14 gi|257386976|ref|YP_003176749.1| - 0.12 10.1 0.0 0.16 9.8 0.0 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF947 PF06102.7 gi|257386976|ref|YP_003176749.1| - 0.3 10.8 2.9 0.45 10.3 2.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF947) APG6 PF04111.7 gi|257386976|ref|YP_003176749.1| - 0.48 9.4 4.7 0.67 8.9 3.2 1.1 1 0 0 1 1 1 0 Autophagy protein Apg6 DivIC PF04977.10 gi|257386976|ref|YP_003176749.1| - 1.4 8.4 9.5 0.89 9.0 2.1 2.4 1 1 1 2 2 2 0 Septum formation initiator IncA PF04156.9 gi|257386976|ref|YP_003176749.1| - 3.9 7.0 16.2 0.16 11.5 3.2 2.7 3 0 0 3 3 3 0 IncA protein Aminotran_3 PF00202.16 gi|257386977|ref|YP_003176750.1| - 8.3e-68 228.7 0.0 1.1e-67 228.3 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.16 gi|257386977|ref|YP_003176750.1| - 0.0005 19.1 0.0 0.00087 18.3 0.0 1.4 1 1 0 1 1 1 1 Aminotransferase class I and II MoeA_N PF03453.12 gi|257386978|ref|YP_003176751.1| - 1.4e-19 70.0 5.3 1.6e-19 69.8 3.7 1.1 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|257386979|ref|YP_003176752.1| - 4.7e-30 103.9 1.1 5.4e-30 103.6 0.8 1.0 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoaC PF01967.16 gi|257386980|ref|YP_003176753.1| - 3.8e-47 159.3 0.7 4.4e-47 159.1 0.5 1.0 1 0 0 1 1 1 1 MoaC family MoaE PF02391.12 gi|257386982|ref|YP_003176755.1| - 1e-25 89.8 0.2 2.2e-25 88.7 0.1 1.6 1 0 0 1 1 1 1 MoaE protein MobB PF03205.9 gi|257386982|ref|YP_003176755.1| - 7.3e-21 74.3 0.0 1.2e-20 73.6 0.0 1.4 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B AAA_16 PF13191.1 gi|257386982|ref|YP_003176755.1| - 0.00037 20.5 0.2 0.11 12.4 0.0 2.4 1 1 0 2 2 2 1 AAA ATPase domain AAA_17 PF13207.1 gi|257386982|ref|YP_003176755.1| - 0.0012 19.6 2.7 0.012 16.4 1.9 2.3 1 1 0 1 1 1 1 AAA domain ArgK PF03308.11 gi|257386982|ref|YP_003176755.1| - 0.0039 15.9 0.1 0.0074 15.0 0.0 1.4 1 0 0 1 1 1 1 ArgK protein NTPase_1 PF03266.10 gi|257386982|ref|YP_003176755.1| - 0.0062 16.2 0.0 0.011 15.4 0.0 1.4 1 0 0 1 1 1 1 NTPase CbiA PF01656.18 gi|257386982|ref|YP_003176755.1| - 0.01 15.2 0.0 0.018 14.4 0.0 1.5 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain GTP_EFTU PF00009.22 gi|257386982|ref|YP_003176755.1| - 0.032 13.6 0.1 0.053 12.9 0.0 1.4 1 0 0 1 1 1 0 Elongation factor Tu GTP binding domain Miro PF08477.8 gi|257386982|ref|YP_003176755.1| - 0.047 14.1 0.0 0.78 10.2 0.0 2.5 3 0 0 3 3 3 0 Miro-like protein MMR_HSR1 PF01926.18 gi|257386982|ref|YP_003176755.1| - 0.058 13.3 0.0 0.095 12.6 0.0 1.4 1 0 0 1 1 1 0 50S ribosome-binding GTPase PRK PF00485.13 gi|257386982|ref|YP_003176755.1| - 0.059 12.9 0.0 0.087 12.3 0.0 1.2 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_22 PF13401.1 gi|257386982|ref|YP_003176755.1| - 0.068 13.3 0.0 0.14 12.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|257386982|ref|YP_003176755.1| - 0.083 12.7 0.2 0.49 10.2 0.0 2.4 3 1 0 3 3 3 0 AAA domain cobW PF02492.14 gi|257386982|ref|YP_003176755.1| - 0.1 12.0 0.0 0.17 11.3 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_10 PF12846.2 gi|257386982|ref|YP_003176755.1| - 0.11 11.9 0.0 0.17 11.2 0.0 1.6 1 1 0 1 1 1 0 AAA-like domain PduV-EutP PF10662.4 gi|257386982|ref|YP_003176755.1| - 0.14 11.6 0.0 2.9 7.3 0.0 2.2 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation CheC PF04509.7 gi|257386983|ref|YP_003176756.1| - 2.1e-14 52.9 0.7 5.2e-14 51.6 0.3 1.9 2 0 0 2 2 2 1 CheC-like family CheX PF13690.1 gi|257386983|ref|YP_003176756.1| - 0.00096 18.9 0.1 0.0016 18.2 0.0 1.3 1 0 0 1 1 1 1 Chemotaxis phosphatase CheX HTH_24 PF13412.1 gi|257386984|ref|YP_003176757.1| - 2.2e-14 52.5 0.0 9.2e-13 47.3 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|257386984|ref|YP_003176757.1| - 8.6e-11 41.1 0.9 1.4e-10 40.5 0.2 1.7 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.16 gi|257386984|ref|YP_003176757.1| - 9.5e-09 34.8 0.0 1.4e-08 34.3 0.0 1.3 1 0 0 1 1 1 1 AsnC family MarR_2 PF12802.2 gi|257386984|ref|YP_003176757.1| - 2.5e-05 23.8 0.0 4.2e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|257386984|ref|YP_003176757.1| - 0.00013 21.5 0.0 0.00018 21.0 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.1 gi|257386984|ref|YP_003176757.1| - 0.00017 21.8 0.1 0.00066 19.9 0.0 2.0 2 1 0 2 2 2 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|257386984|ref|YP_003176757.1| - 0.00018 21.1 0.0 0.00028 20.5 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|257386984|ref|YP_003176757.1| - 0.0063 16.2 0.0 0.01 15.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|257386984|ref|YP_003176757.1| - 0.0064 16.1 0.0 0.014 15.0 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_28 PF13518.1 gi|257386984|ref|YP_003176757.1| - 0.0099 15.8 0.0 0.016 15.2 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|257386984|ref|YP_003176757.1| - 0.03 14.1 0.0 0.051 13.3 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_23 PF13384.1 gi|257386984|ref|YP_003176757.1| - 0.031 13.9 0.0 0.06 13.0 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain HTH_IclR PF09339.5 gi|257386984|ref|YP_003176757.1| - 0.037 13.6 0.0 0.063 12.8 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain Fe_dep_repress PF01325.14 gi|257386984|ref|YP_003176757.1| - 0.081 12.8 0.0 0.19 11.7 0.0 1.6 2 0 0 2 2 1 0 Iron dependent repressor, N-terminal DNA binding domain GPW_gp25 PF04965.9 gi|257386984|ref|YP_003176757.1| - 0.084 12.4 0.0 0.19 11.2 0.0 1.6 1 0 0 1 1 1 0 Gene 25-like lysozyme HTH_1 PF00126.22 gi|257386984|ref|YP_003176757.1| - 0.098 12.4 0.0 0.25 11.1 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family DUF2250 PF10007.4 gi|257386984|ref|YP_003176757.1| - 0.13 12.1 0.0 0.2 11.5 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_34 PF13601.1 gi|257386984|ref|YP_003176757.1| - 0.14 12.2 0.0 0.39 10.7 0.0 1.6 2 0 0 2 2 2 0 Winged helix DNA-binding domain P-II PF00543.17 gi|257386985|ref|YP_003176758.1| - 1.1e-33 115.7 0.2 1.3e-33 115.5 0.1 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II ABC_ATPase PF09818.4 gi|257386985|ref|YP_003176758.1| - 0.039 12.5 0.3 0.059 11.9 0.2 1.2 1 0 0 1 1 1 0 Predicted ATPase of the ABC class Ammonium_transp PF00909.16 gi|257386986|ref|YP_003176759.1| - 4.2e-97 325.1 43.6 5e-97 324.8 30.2 1.1 1 0 0 1 1 1 1 Ammonium Transporter Family bPH_2 PF03703.9 gi|257386987|ref|YP_003176760.1| - 0.11 12.4 0.0 0.24 11.4 0.0 1.5 1 0 0 1 1 1 0 Bacterial PH domain ALAD PF00490.16 gi|257386988|ref|YP_003176761.1| - 2.8e-141 470.0 0.0 3.2e-141 469.9 0.0 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase E1-E2_ATPase PF00122.15 gi|257386989|ref|YP_003176762.1| - 0.094 11.7 1.3 0.11 11.5 0.9 1.0 1 0 0 1 1 1 0 E1-E2 ATPase PetM PF08041.6 gi|257386989|ref|YP_003176762.1| - 0.37 10.2 5.6 5.9 6.4 0.5 2.7 2 0 0 2 2 2 0 PetM family of cytochrome b6f complex subunit 7 DUF3784 PF12650.2 gi|257386989|ref|YP_003176762.1| - 0.47 10.4 5.4 2.9 7.9 0.6 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF3784) Cyt_c_ox_IV PF12270.3 gi|257386989|ref|YP_003176762.1| - 5.3 6.8 6.7 38 4.0 4.6 2.1 1 1 0 1 1 1 0 Cytochrome c oxidase subunit IV SNARE_assoc PF09335.6 gi|257386990|ref|YP_003176763.1| - 1e-13 51.5 2.4 1e-13 51.5 1.6 2.3 1 1 1 2 2 2 1 SNARE associated Golgi protein PEN-2 PF10251.4 gi|257386990|ref|YP_003176763.1| - 0.024 14.8 0.0 0.069 13.3 0.0 1.8 1 0 0 1 1 1 0 Presenilin enhancer-2 subunit of gamma secretase HTH_24 PF13412.1 gi|257386991|ref|YP_003176764.1| - 7e-15 54.1 0.2 1.1e-14 53.5 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|257386991|ref|YP_003176764.1| - 1.9e-13 49.7 2.0 5.7e-13 48.1 1.6 1.6 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.7 gi|257386991|ref|YP_003176764.1| - 2.1e-06 27.2 0.1 4.4e-06 26.2 0.1 1.5 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.2 gi|257386991|ref|YP_003176764.1| - 5.6e-06 25.9 0.0 9.6e-06 25.1 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|257386991|ref|YP_003176764.1| - 1.7e-05 24.2 0.0 2.8e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|257386991|ref|YP_003176764.1| - 2.2e-05 23.8 0.0 4e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_20 PF12840.2 gi|257386991|ref|YP_003176764.1| - 9e-05 22.1 0.0 0.00019 21.1 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.1 gi|257386991|ref|YP_003176764.1| - 0.00021 21.5 0.1 0.00085 19.6 0.0 1.9 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|257386991|ref|YP_003176764.1| - 0.00035 20.1 0.0 0.00052 19.6 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.14 gi|257386991|ref|YP_003176764.1| - 0.0004 20.2 0.0 0.00081 19.2 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.15 gi|257386991|ref|YP_003176764.1| - 0.00063 19.8 0.0 0.0012 18.9 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator HTH_DeoR PF08220.7 gi|257386991|ref|YP_003176764.1| - 0.001 18.5 0.1 0.02 14.4 0.0 2.2 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_23 PF13384.1 gi|257386991|ref|YP_003176764.1| - 0.0056 16.2 0.0 0.012 15.2 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_Tnp_ISL3 PF13542.1 gi|257386991|ref|YP_003176764.1| - 0.012 14.7 0.1 0.029 13.5 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 MarR PF01047.17 gi|257386991|ref|YP_003176764.1| - 0.012 15.2 0.0 0.022 14.4 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_28 PF13518.1 gi|257386991|ref|YP_003176764.1| - 0.014 15.3 0.0 0.028 14.4 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_10 PF04967.7 gi|257386991|ref|YP_003176764.1| - 0.041 13.4 0.0 0.073 12.6 0.0 1.3 1 0 0 1 1 1 0 HTH DNA binding domain HTH_Mga PF08280.6 gi|257386991|ref|YP_003176764.1| - 0.043 13.5 0.0 0.07 12.8 0.0 1.3 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain Sigma70_r4 PF04545.11 gi|257386991|ref|YP_003176764.1| - 0.051 12.9 0.0 0.078 12.3 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_38 PF13936.1 gi|257386991|ref|YP_003176764.1| - 0.055 13.0 0.1 0.11 12.1 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_12 PF08461.5 gi|257386991|ref|YP_003176764.1| - 0.059 13.0 0.2 0.2 11.3 0.1 2.1 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain TrmB PF01978.14 gi|257386991|ref|YP_003176764.1| - 0.099 12.3 0.0 0.21 11.3 0.0 1.6 2 0 0 2 2 1 0 Sugar-specific transcriptional regulator TrmB GntR PF00392.16 gi|257386991|ref|YP_003176764.1| - 0.11 11.9 0.0 0.27 10.6 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Amidohydro_1 PF01979.15 gi|257386992|ref|YP_003176765.1| - 3.6e-23 82.7 0.0 1.8e-21 77.1 0.0 2.0 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|257386992|ref|YP_003176765.1| - 8e-09 35.9 14.9 1.7e-07 31.5 10.3 2.1 1 1 0 1 1 1 1 Amidohydrolase A_deaminase PF00962.17 gi|257386992|ref|YP_003176765.1| - 2.3e-07 30.0 0.0 3.4e-07 29.4 0.0 1.2 1 0 0 1 1 1 1 Adenosine/AMP deaminase Amidohydro_5 PF13594.1 gi|257386992|ref|YP_003176765.1| - 5.4e-07 29.3 0.0 1.1e-06 28.3 0.0 1.6 1 0 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|257386992|ref|YP_003176765.1| - 7e-07 28.7 8.6 1.2e-06 28.0 2.0 2.3 1 1 1 2 2 2 1 Amidohydrolase family DUF1330 PF07045.6 gi|257386992|ref|YP_003176765.1| - 0.14 12.0 0.1 0.39 10.6 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF1330) Oxidored_q1 PF00361.15 gi|257386993|ref|YP_003176766.1| - 4.1e-29 101.6 6.9 4.1e-29 101.6 4.8 1.6 1 1 0 1 1 1 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|257386993|ref|YP_003176766.1| - 4.4e-08 32.5 1.6 5.8e-08 32.1 0.0 2.0 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus OCIA PF07051.6 gi|257386993|ref|YP_003176766.1| - 0.091 12.1 0.3 0.54 9.6 0.1 2.3 2 0 0 2 2 2 0 Ovarian carcinoma immunoreactive antigen (OCIA) E_Pc_C PF06752.7 gi|257386993|ref|YP_003176766.1| - 0.14 11.6 2.0 0.28 10.6 1.4 1.4 1 0 0 1 1 1 0 Enhancer of Polycomb C-terminus DUF2309 PF10070.4 gi|257386994|ref|YP_003176767.1| - 2.8e-251 836.0 0.0 4.4e-251 835.3 0.0 1.3 1 1 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2309) MoCF_biosynth PF00994.19 gi|257386995|ref|YP_003176768.1| - 2.7e-33 114.4 0.0 3.7e-33 113.9 0.0 1.1 1 0 0 1 1 1 1 Probable molybdopterin binding domain CCG PF02754.11 gi|257386996|ref|YP_003176769.1| - 1.3e-18 66.7 0.0 3.1e-13 49.5 0.0 2.4 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|257386996|ref|YP_003176769.1| - 6.5e-11 42.0 8.0 6.6e-11 42.0 4.1 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|257386996|ref|YP_003176769.1| - 3.5e-10 39.9 8.1 1.7e-09 37.7 4.3 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|257386996|ref|YP_003176769.1| - 3.7e-09 35.8 12.6 7.6e-05 22.1 1.0 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|257386996|ref|YP_003176769.1| - 8.2e-09 35.7 5.1 0.0036 17.6 0.1 3.6 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|257386996|ref|YP_003176769.1| - 6e-08 32.3 13.5 3.9e-07 29.7 8.0 2.8 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|257386996|ref|YP_003176769.1| - 3.9e-07 29.6 19.0 1.8e-05 24.3 1.0 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|257386996|ref|YP_003176769.1| - 6.3e-06 26.4 13.3 1.1e-05 25.7 7.7 2.5 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|257386996|ref|YP_003176769.1| - 0.0001 22.0 21.7 0.0005 19.8 1.6 3.0 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|257386996|ref|YP_003176769.1| - 0.00019 21.1 11.8 0.027 14.3 0.7 2.9 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|257386996|ref|YP_003176769.1| - 0.00046 20.3 19.0 0.0045 17.1 0.6 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain Fer4_17 PF13534.1 gi|257386996|ref|YP_003176769.1| - 0.00057 20.1 15.4 0.002 18.4 8.7 2.9 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|257386996|ref|YP_003176769.1| - 0.0027 18.2 5.6 0.29 11.7 0.3 3.2 2 0 0 2 2 2 2 4Fe-4S single cluster domain Fer4_16 PF13484.1 gi|257386996|ref|YP_003176769.1| - 0.026 15.2 14.9 0.63 10.8 1.3 2.8 2 1 1 3 3 3 0 4Fe-4S double cluster binding domain Fer4_13 PF13370.1 gi|257386996|ref|YP_003176769.1| - 0.11 12.9 15.0 0.62 10.4 1.9 3.0 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|257386996|ref|YP_003176769.1| - 0.82 10.3 24.8 0.42 11.2 2.7 3.3 3 0 0 3 3 3 0 4Fe-4S binding domain DUF350 PF03994.9 gi|257386996|ref|YP_003176769.1| - 5 6.9 7.9 0.31 10.8 0.3 2.6 2 0 0 2 2 2 0 Domain of Unknown Function (DUF350) RNA_pol_Rpb6 PF01192.17 gi|257386997|ref|YP_003176770.1| - 0.028 14.1 0.6 0.068 12.9 0.4 1.6 1 0 0 1 1 1 0 RNA polymerase Rpb6 COP23 PF14218.1 gi|257386997|ref|YP_003176770.1| - 0.13 11.8 0.0 0.19 11.2 0.0 1.3 1 0 0 1 1 1 0 Circadian oscillating protein COP23 Radical_SAM PF04055.16 gi|257386999|ref|YP_003176772.1| - 2.3e-05 24.6 1.1 0.0008 19.6 0.3 2.5 2 1 0 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|257386999|ref|YP_003176772.1| - 0.00012 22.0 0.2 0.00022 21.2 0.1 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|257386999|ref|YP_003176772.1| - 0.0006 19.9 0.0 0.0011 19.0 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain MFS_1 PF07690.11 gi|257387000|ref|YP_003176773.1| - 2.9e-48 164.3 71.7 3.9e-44 150.8 36.3 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily OppC_N PF12911.2 gi|257387000|ref|YP_003176773.1| - 0.45 9.9 4.4 0.5 9.7 0.1 2.8 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C MFS_1_like PF12832.2 gi|257387000|ref|YP_003176773.1| - 4.9 7.0 14.7 0.042 13.6 1.2 3.0 3 0 0 3 3 3 0 MFS_1 like family Ribonuc_L-PSP PF01042.16 gi|257387002|ref|YP_003176775.1| - 1.9e-41 140.5 0.1 2.1e-41 140.4 0.1 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP DUF148 PF02520.12 gi|257387002|ref|YP_003176775.1| - 0.092 12.5 0.2 0.13 12.0 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function DUF148 DELLA PF12041.3 gi|257387002|ref|YP_003176775.1| - 0.11 12.2 0.2 0.15 11.7 0.2 1.2 1 0 0 1 1 1 0 Transcriptional regulator DELLA protein N terminal adh_short_C2 PF13561.1 gi|257387003|ref|YP_003176776.1| - 3e-32 112.3 0.0 3.7e-32 111.9 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|257387003|ref|YP_003176776.1| - 9e-31 107.0 0.2 1.2e-30 106.6 0.1 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|257387003|ref|YP_003176776.1| - 9.5e-12 44.9 0.2 1.3e-11 44.4 0.1 1.2 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.1 gi|257387003|ref|YP_003176776.1| - 0.00029 20.9 0.1 0.00046 20.2 0.1 1.4 1 0 0 1 1 1 1 NADH(P)-binding Epimerase PF01370.16 gi|257387003|ref|YP_003176776.1| - 0.00036 20.0 0.0 0.00091 18.7 0.0 1.7 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family DUF1446 PF07287.6 gi|257387003|ref|YP_003176776.1| - 0.012 14.1 0.0 0.076 11.4 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1446) 3HCDH_N PF02737.13 gi|257387003|ref|YP_003176776.1| - 0.041 13.5 0.0 0.069 12.8 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain MR_MLE_C PF13378.1 gi|257387004|ref|YP_003176777.1| - 1.4e-20 73.3 0.1 1.2e-19 70.2 0.1 2.2 2 0 0 2 2 2 1 Enolase C-terminal domain-like MR_MLE_N PF02746.11 gi|257387004|ref|YP_003176777.1| - 2.7e-16 59.6 0.0 1e-15 57.7 0.0 2.0 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MR_MLE PF01188.16 gi|257387004|ref|YP_003176777.1| - 8.6e-15 55.0 0.2 2.8e-14 53.3 0.1 2.0 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BPD_transp_1 PF00528.17 gi|257387005|ref|YP_003176778.1| - 3.3e-19 69.1 15.0 3.3e-19 69.1 10.4 2.2 1 1 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|257387006|ref|YP_003176779.1| - 3.7e-22 78.7 14.3 3.7e-22 78.7 9.9 1.6 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF2448 PF10476.4 gi|257387006|ref|YP_003176779.1| - 0.039 13.4 0.0 0.078 12.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function C-terminus (DUF2448) SBP_bac_1 PF01547.20 gi|257387007|ref|YP_003176780.1| - 1.4e-36 126.8 0.8 2.2e-36 126.2 0.5 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|257387007|ref|YP_003176780.1| - 2.3e-32 112.8 1.9 3.3e-32 112.3 1.3 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Creatininase PF02633.9 gi|257387008|ref|YP_003176781.1| - 6.4e-64 215.2 1.4 7.2e-64 215.1 1.0 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase ABC_tran PF00005.22 gi|257387009|ref|YP_003176782.1| - 4.8e-32 111.1 0.0 7.5e-32 110.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.5 gi|257387009|ref|YP_003176782.1| - 2.7e-12 46.5 0.1 1.1e-11 44.5 0.1 2.1 2 0 0 2 2 2 1 TOBE domain TOBE PF03459.12 gi|257387009|ref|YP_003176782.1| - 5.5e-09 36.0 0.0 6.3e-08 32.6 0.0 2.5 2 0 0 2 2 2 1 TOBE domain AAA_21 PF13304.1 gi|257387009|ref|YP_003176782.1| - 7e-09 36.0 0.0 5.2e-07 29.9 0.0 2.3 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|257387009|ref|YP_003176782.1| - 7.8e-05 22.0 0.0 0.00013 21.2 0.0 1.3 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain DUF258 PF03193.11 gi|257387009|ref|YP_003176782.1| - 0.00047 19.3 0.0 0.00081 18.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_15 PF13175.1 gi|257387009|ref|YP_003176782.1| - 0.00063 18.9 0.0 0.0049 15.9 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain AAA_33 PF13671.1 gi|257387009|ref|YP_003176782.1| - 0.00069 19.5 0.0 0.0011 18.8 0.0 1.6 1 1 0 1 1 1 1 AAA domain Rad17 PF03215.10 gi|257387009|ref|YP_003176782.1| - 0.0012 17.5 0.2 0.006 15.3 0.0 1.7 1 1 1 2 2 2 1 Rad17 cell cycle checkpoint protein AAA_22 PF13401.1 gi|257387009|ref|YP_003176782.1| - 0.0059 16.7 0.3 0.016 15.3 0.2 1.8 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|257387009|ref|YP_003176782.1| - 0.0084 16.1 0.1 0.021 14.8 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.24 gi|257387009|ref|YP_003176782.1| - 0.01 16.0 0.0 0.06 13.5 0.0 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|257387009|ref|YP_003176782.1| - 0.022 15.5 0.1 0.053 14.3 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|257387009|ref|YP_003176782.1| - 0.023 14.1 0.0 0.042 13.2 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain AAA_23 PF13476.1 gi|257387009|ref|YP_003176782.1| - 0.035 14.4 0.1 0.095 13.0 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|257387009|ref|YP_003176782.1| - 0.039 13.4 0.0 0.083 12.4 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|257387009|ref|YP_003176782.1| - 0.045 13.1 0.0 1.6 8.0 0.0 2.2 2 0 0 2 2 2 0 AAA domain AAA_28 PF13521.1 gi|257387009|ref|YP_003176782.1| - 0.1 12.5 0.3 0.37 10.7 0.0 2.0 2 1 0 2 2 2 0 AAA domain RNA_helicase PF00910.17 gi|257387009|ref|YP_003176782.1| - 0.14 12.2 0.0 0.79 9.9 0.0 2.2 2 0 0 2 2 2 0 RNA helicase FliT PF05400.8 gi|257387009|ref|YP_003176782.1| - 0.28 11.6 2.3 6.1 7.3 0.2 2.4 2 0 0 2 2 2 0 Flagellar protein FliT IclR PF01614.13 gi|257387010|ref|YP_003176783.1| - 2.3e-33 114.6 0.2 5.9e-33 113.3 0.1 1.7 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|257387010|ref|YP_003176783.1| - 2.5e-10 39.7 0.1 8.1e-10 38.1 0.0 1.9 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|257387010|ref|YP_003176783.1| - 1.4e-07 30.7 0.0 3.2e-07 29.6 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|257387010|ref|YP_003176783.1| - 1.1e-05 25.0 0.0 2.6e-05 23.8 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_45 PF14947.1 gi|257387010|ref|YP_003176783.1| - 3.1e-05 23.6 0.0 5.5e-05 22.8 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix MarR PF01047.17 gi|257387010|ref|YP_003176783.1| - 0.00011 21.7 0.0 0.00022 20.8 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|257387010|ref|YP_003176783.1| - 0.00033 20.4 0.0 0.00089 19.0 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|257387010|ref|YP_003176783.1| - 0.00069 19.2 0.0 0.003 17.2 0.0 2.0 3 0 0 3 3 3 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|257387010|ref|YP_003176783.1| - 0.0032 17.0 0.0 0.0074 15.9 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Penicillinase_R PF03965.11 gi|257387010|ref|YP_003176783.1| - 0.011 15.8 0.0 0.044 13.8 0.0 1.9 2 0 0 2 2 2 0 Penicillinase repressor HTH_38 PF13936.1 gi|257387010|ref|YP_003176783.1| - 0.043 13.3 0.0 0.47 10.0 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_27 PF13463.1 gi|257387010|ref|YP_003176783.1| - 0.059 13.6 0.0 0.19 12.0 0.0 1.8 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF373 PF04123.8 gi|257387011|ref|YP_003176784.1| - 4e-113 377.9 10.6 4.9e-113 377.6 7.3 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) PEMT PF04191.8 gi|257387011|ref|YP_003176784.1| - 0.088 12.9 4.3 0.36 10.9 0.7 3.1 2 1 1 3 3 3 0 Phospholipid methyltransferase SecD_SecF PF02355.11 gi|257387011|ref|YP_003176784.1| - 0.2 10.8 4.6 0.31 10.2 0.4 2.5 2 0 0 2 2 2 0 Protein export membrane protein Jiraiya PF15038.1 gi|257387011|ref|YP_003176784.1| - 0.35 10.2 3.5 0.88 8.9 0.6 2.5 2 1 0 2 2 2 0 Jiraiya CD20 PF04103.10 gi|257387011|ref|YP_003176784.1| - 1.7 8.5 8.3 1.2 9.0 0.4 2.2 2 0 0 2 2 2 0 CD20-like family Auto_anti-p27 PF06677.7 gi|257387013|ref|YP_003176786.1| - 0.0011 18.6 1.2 0.0015 18.2 0.9 1.1 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-C3HC4_3 PF13920.1 gi|257387013|ref|YP_003176786.1| - 0.0019 17.7 0.1 0.0026 17.3 0.1 1.1 1 0 0 1 1 1 1 Zinc finger, C3HC4 type (RING finger) Cys_rich_CPCC PF14206.1 gi|257387013|ref|YP_003176786.1| - 0.0057 16.1 0.9 0.0057 16.1 0.6 1.1 1 0 0 1 1 1 1 Cysteine-rich CPCC DZR PF12773.2 gi|257387013|ref|YP_003176786.1| - 0.0086 15.8 0.4 0.01 15.6 0.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon RNHCP PF12647.2 gi|257387013|ref|YP_003176786.1| - 0.014 15.1 0.2 0.014 15.1 0.1 1.1 1 0 0 1 1 1 0 RNHCP domain C1_2 PF03107.11 gi|257387013|ref|YP_003176786.1| - 0.056 13.5 0.9 0.9 9.7 0.1 2.1 2 0 0 2 2 2 0 C1 domain zf-RING_4 PF14570.1 gi|257387013|ref|YP_003176786.1| - 0.061 12.9 0.5 0.083 12.4 0.3 1.2 1 0 0 1 1 1 0 RING/Ubox like zinc-binding domain Zn-ribbon_8 PF09723.5 gi|257387013|ref|YP_003176786.1| - 0.099 12.6 2.2 0.17 11.8 1.5 1.4 1 1 0 1 1 1 0 Zinc ribbon domain zf-RING_2 PF13639.1 gi|257387013|ref|YP_003176786.1| - 0.1 12.4 0.2 0.13 12.0 0.2 1.1 1 0 0 1 1 1 0 Ring finger domain zf-B_box PF00643.19 gi|257387013|ref|YP_003176786.1| - 0.13 12.1 0.7 11 5.9 0.1 2.1 2 0 0 2 2 2 0 B-box zinc finger zf-RING_5 PF14634.1 gi|257387013|ref|YP_003176786.1| - 0.16 11.7 0.8 0.23 11.2 0.5 1.3 1 0 0 1 1 1 0 zinc-RING finger domain zf-FPG_IleRS PF06827.9 gi|257387013|ref|YP_003176786.1| - 0.27 10.9 1.5 0.51 10.0 1.0 1.5 1 1 0 1 1 1 0 Zinc finger found in FPG and IleRS TF_Zn_Ribbon PF08271.7 gi|257387013|ref|YP_003176786.1| - 0.36 10.1 8.0 0.36 10.1 4.1 2.0 2 1 0 2 2 2 0 TFIIB zinc-binding zf-RING_3 PF14369.1 gi|257387013|ref|YP_003176786.1| - 0.36 10.8 3.5 0.81 9.7 2.4 1.6 1 1 0 1 1 1 0 zinc-finger ZZ PF00569.12 gi|257387013|ref|YP_003176786.1| - 0.39 10.2 2.6 6.9 6.3 1.8 2.0 1 1 0 1 1 1 0 Zinc finger, ZZ type Rubredoxin PF00301.15 gi|257387013|ref|YP_003176786.1| - 0.41 10.5 5.3 14 5.6 3.6 2.2 1 1 1 2 2 2 0 Rubredoxin DUF3039 PF11238.3 gi|257387013|ref|YP_003176786.1| - 0.41 10.1 3.5 0.3 10.5 1.3 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF3039) DUF1610 PF07754.6 gi|257387013|ref|YP_003176786.1| - 0.54 10.4 0.2 0.54 10.4 0.2 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF1610) ADK_lid PF05191.9 gi|257387013|ref|YP_003176786.1| - 2 8.1 7.1 0.47 10.1 1.0 2.1 1 1 1 2 2 2 0 Adenylate kinase, active site lid DUF1610 PF07754.6 gi|257387014|ref|YP_003176787.1| - 0.067 13.3 0.2 0.19 11.8 0.1 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF1610) Zn-ribbon_8 PF09723.5 gi|257387014|ref|YP_003176787.1| - 0.76 9.7 3.3 1.4 8.9 2.3 1.4 1 0 0 1 1 1 0 Zinc ribbon domain DUF1424 PF07232.6 gi|257387015|ref|YP_003176788.1| - 2.8e-15 55.9 2.9 6.6e-15 54.6 2.0 1.6 1 0 0 1 1 1 1 Putative rep protein (DUF1424) YugN PF08868.5 gi|257387015|ref|YP_003176788.1| - 0.028 14.0 0.2 0.11 12.0 0.1 1.9 2 0 0 2 2 2 0 YugN-like family Lipase PF00151.14 gi|257387018|ref|YP_003176791.1| - 0.13 11.4 0.0 0.17 11.0 0.0 1.1 1 0 0 1 1 1 0 Lipase AAA_10 PF12846.2 gi|257387023|ref|YP_003176796.1| - 0.0022 17.4 0.2 0.0028 17.1 0.1 1.1 1 0 0 1 1 1 1 AAA-like domain Trypsin_2 PF13365.1 gi|257387024|ref|YP_003176797.1| - 8.2e-12 45.1 0.0 1.3e-11 44.5 0.0 1.3 1 0 0 1 1 1 1 Trypsin-like peptidase domain YhfH PF14149.1 gi|257387025|ref|YP_003176798.1| - 0.05 13.4 0.7 0.09 12.5 0.5 1.5 1 1 0 1 1 1 0 YhfH-like protein DUF951 PF06107.6 gi|257387025|ref|YP_003176798.1| - 0.053 13.0 0.1 0.08 12.4 0.0 1.4 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF951) DUF3052 PF11253.3 gi|257387026|ref|YP_003176799.1| - 0.11 12.1 1.4 0.23 11.0 0.9 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3052) RHH_1 PF01402.16 gi|257387027|ref|YP_003176800.1| - 0.037 13.9 6.3 0.32 10.9 0.2 3.2 1 1 1 2 2 2 0 Ribbon-helix-helix protein, copG family Ead_Ea22 PF13935.1 gi|257387027|ref|YP_003176800.1| - 0.61 10.4 3.1 5.9 7.2 1.0 1.8 1 1 1 2 2 2 0 Ead/Ea22-like protein Phage_integrase PF00589.17 gi|257387028|ref|YP_003176801.1| - 6.6e-10 38.9 0.0 3.8e-09 36.4 0.0 2.1 2 1 0 2 2 2 1 Phage integrase family Phage_int_SAM_1 PF02899.12 gi|257387028|ref|YP_003176801.1| - 1.3e-07 31.6 0.0 1.2e-06 28.5 0.0 2.4 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.1 gi|257387028|ref|YP_003176801.1| - 0.00049 20.3 0.0 0.0012 19.0 0.0 1.7 1 1 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain DUF2391 PF09622.5 gi|257387029|ref|YP_003176802.1| - 0.043 12.9 1.4 0.045 12.8 1.0 1.0 1 0 0 1 1 1 0 Putative integral membrane protein (DUF2391) Adeno_E3_CR2 PF02439.10 gi|257387029|ref|YP_003176802.1| - 1.3 8.5 6.0 1.5 8.3 0.2 2.1 2 0 0 2 2 2 0 Adenovirus E3 region protein CR2 DUF347 PF03988.7 gi|257387029|ref|YP_003176802.1| - 6.3 6.7 6.8 1.3 8.9 1.7 1.8 1 1 1 2 2 2 0 Repeat of Unknown Function (DUF347) MtrF PF09472.5 gi|257387030|ref|YP_003176803.1| - 0.65 9.2 4.3 1.5 8.0 3.0 1.6 1 0 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) TrkA_N PF02254.13 gi|257387031|ref|YP_003176804.1| - 5.4e-42 142.4 8.6 1.6e-22 79.7 0.4 3.4 3 1 1 4 4 4 2 TrkA-N domain TrkA_C PF02080.16 gi|257387031|ref|YP_003176804.1| - 1.9e-29 101.0 1.4 1.4e-14 53.4 0.4 2.8 2 0 0 2 2 2 2 TrkA-C domain FAD_binding_3 PF01494.14 gi|257387031|ref|YP_003176804.1| - 2.8e-06 26.6 0.7 0.037 13.0 0.1 2.2 2 0 0 2 2 2 2 FAD binding domain ThiF PF00899.16 gi|257387031|ref|YP_003176804.1| - 0.0025 17.6 2.6 0.78 9.5 0.0 3.1 3 0 0 3 3 3 2 ThiF family NAD_binding_2 PF03446.10 gi|257387031|ref|YP_003176804.1| - 0.0065 16.3 0.1 0.3 10.9 0.0 3.2 3 1 0 3 3 3 1 NAD binding domain of 6-phosphogluconate dehydrogenase XdhC_C PF13478.1 gi|257387031|ref|YP_003176804.1| - 0.008 16.4 1.1 0.019 15.2 0.1 2.1 2 0 0 2 2 2 1 XdhC Rossmann domain 2-Hacid_dh_C PF02826.14 gi|257387031|ref|YP_003176804.1| - 0.0094 15.1 0.0 0.018 14.1 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|257387031|ref|YP_003176804.1| - 0.012 15.8 2.7 0.023 14.9 0.1 2.7 3 0 0 3 3 3 0 Putative NAD(P)-binding AlaDh_PNT_C PF01262.16 gi|257387031|ref|YP_003176804.1| - 0.034 13.7 0.2 0.18 11.3 0.0 2.2 2 1 1 3 3 3 0 Alanine dehydrogenase/PNT, C-terminal domain AdoHcyase_NAD PF00670.16 gi|257387031|ref|YP_003176804.1| - 0.039 13.8 0.0 0.26 11.1 0.0 2.2 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Ion_trans_2 PF07885.11 gi|257387031|ref|YP_003176804.1| - 0.049 13.3 3.3 0.13 11.9 2.3 1.7 1 0 0 1 1 1 0 Ion channel Pyr_redox PF00070.22 gi|257387031|ref|YP_003176804.1| - 0.056 13.8 0.6 3.2 8.2 0.1 3.1 3 0 0 3 3 2 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|257387031|ref|YP_003176804.1| - 0.085 12.8 0.0 0.48 10.4 0.0 2.2 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|257387031|ref|YP_003176804.1| - 0.29 9.9 7.3 1.7 7.4 3.9 2.7 2 1 0 2 2 2 0 FAD dependent oxidoreductase SUR7 PF06687.7 gi|257387032|ref|YP_003176805.1| - 0.18 11.3 3.8 0.24 10.9 2.6 1.2 1 0 0 1 1 1 0 SUR7/PalI family YrhK PF14145.1 gi|257387032|ref|YP_003176805.1| - 0.37 10.4 4.4 1.1 9.0 3.0 1.9 1 1 0 1 1 1 0 YrhK-like protein MerC PF03203.9 gi|257387032|ref|YP_003176805.1| - 0.5 10.7 4.5 0.24 11.7 1.0 1.8 2 0 0 2 2 2 0 MerC mercury resistance protein DUF1418 PF07214.7 gi|257387032|ref|YP_003176805.1| - 2.5 7.7 5.5 0.6 9.7 1.4 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1418) DUF202 PF02656.10 gi|257387032|ref|YP_003176805.1| - 6.2 7.1 6.0 1.8 8.8 0.4 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF202) CBM_6 PF03422.10 gi|257387033|ref|YP_003176806.1| - 0.035 14.2 0.3 0.042 14.0 0.2 1.3 1 0 0 1 1 1 0 Carbohydrate binding module (family 6) Cpn60_TCP1 PF00118.19 gi|257387034|ref|YP_003176807.1| - 1.8e-151 505.0 5.6 2e-151 504.9 3.9 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family YbaB_DNA_bd PF02575.11 gi|257387034|ref|YP_003176807.1| - 2.4 8.0 13.0 3.8 7.4 0.1 4.7 5 0 0 5 5 5 0 YbaB/EbfC DNA-binding family DUF1917 PF08939.5 gi|257387035|ref|YP_003176808.1| - 1.2e-15 57.9 0.2 1.4e-15 57.7 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1917) DUF2061 PF09834.4 gi|257387037|ref|YP_003176810.1| - 1e-15 57.6 2.1 1.2e-15 57.4 1.4 1.1 1 0 0 1 1 1 1 Predicted membrane protein (DUF2061) Fumarate_red_D PF02313.12 gi|257387038|ref|YP_003176811.1| - 0.46 10.3 5.0 0.66 9.8 3.5 1.2 1 0 0 1 1 1 0 Fumarate reductase subunit D DUF2568 PF10823.3 gi|257387039|ref|YP_003176812.1| - 0.086 13.0 1.4 0.11 12.6 1.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2568) Usp PF00582.21 gi|257387040|ref|YP_003176813.1| - 1.4e-19 70.7 0.0 2e-19 70.1 0.0 1.3 1 0 0 1 1 1 1 Universal stress protein family TF_Zn_Ribbon PF08271.7 gi|257387040|ref|YP_003176813.1| - 0.011 14.9 2.2 0.02 14.1 1.5 1.5 1 0 0 1 1 1 0 TFIIB zinc-binding HypA PF01155.14 gi|257387040|ref|YP_003176813.1| - 0.17 11.5 0.5 0.3 10.7 0.4 1.4 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DZR PF12773.2 gi|257387040|ref|YP_003176813.1| - 0.24 11.2 2.8 0.57 10.0 1.9 1.6 1 1 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|257387040|ref|YP_003176813.1| - 0.43 9.8 5.9 1.4 8.2 4.1 1.8 1 1 1 2 2 2 0 zinc-ribbon domain DUF35_N PF12172.3 gi|257387040|ref|YP_003176813.1| - 1.5 8.8 4.2 11 6.0 0.5 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Zn-ribbon_8 PF09723.5 gi|257387040|ref|YP_003176813.1| - 1.6 8.7 7.7 6.5 6.7 0.7 2.6 2 1 1 3 3 3 0 Zinc ribbon domain zf-TFIIB PF13453.1 gi|257387040|ref|YP_003176813.1| - 2.5 7.3 6.6 25 4.1 0.6 2.3 1 1 1 2 2 2 0 Transcription factor zinc-finger zinc_ribbon_2 PF13240.1 gi|257387040|ref|YP_003176813.1| - 3.5 7.2 5.9 15 5.2 4.1 1.9 1 1 0 1 1 1 0 zinc-ribbon domain OCD_Mu_crystall PF02423.10 gi|257387041|ref|YP_003176814.1| - 1.7e-86 289.8 0.7 1.9e-86 289.7 0.5 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family GFO_IDH_MocA PF01408.17 gi|257387041|ref|YP_003176814.1| - 0.088 13.3 0.2 0.16 12.4 0.1 1.5 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold TraG_N PF07916.6 gi|257387042|ref|YP_003176815.1| - 0.13 10.6 0.4 0.14 10.5 0.3 1.0 1 0 0 1 1 1 0 TraG-like protein, N-terminal region Peptidase_S24 PF00717.18 gi|257387043|ref|YP_003176816.1| - 1.6e-05 24.4 0.0 3e-05 23.5 0.0 1.5 1 0 0 1 1 1 1 Peptidase S24-like Pyrophosphatase PF00719.14 gi|257387043|ref|YP_003176816.1| - 0.026 13.9 0.2 0.044 13.2 0.1 1.3 1 0 0 1 1 1 0 Inorganic pyrophosphatase RskA PF10099.4 gi|257387043|ref|YP_003176816.1| - 0.097 12.4 4.7 0.35 10.5 3.0 2.0 1 1 0 1 1 1 0 Anti-sigma-K factor rskA AhpC-TSA PF00578.16 gi|257387044|ref|YP_003176817.1| - 9.2e-25 86.7 0.0 1.1e-24 86.5 0.0 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|257387044|ref|YP_003176817.1| - 9.3e-11 41.4 0.0 1.1e-10 41.2 0.0 1.0 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.1 gi|257387044|ref|YP_003176817.1| - 0.00018 21.3 0.0 0.00023 21.0 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA antioxidant enzyme HSP20 PF00011.16 gi|257387045|ref|YP_003176818.1| - 4.3e-15 55.4 0.0 5e-15 55.2 0.0 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family PDT PF00800.13 gi|257387046|ref|YP_003176819.1| - 6.6e-46 156.1 0.0 8.8e-46 155.7 0.0 1.1 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.20 gi|257387046|ref|YP_003176819.1| - 1.2e-08 34.1 0.0 3e-08 32.9 0.0 1.7 1 0 0 1 1 1 1 ACT domain Pyr_redox_2 PF07992.9 gi|257387048|ref|YP_003176821.1| - 4.5e-40 137.6 0.8 6.9e-40 137.0 0.6 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|257387048|ref|YP_003176821.1| - 3.7e-37 126.7 1.7 9.8e-37 125.3 0.6 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.22 gi|257387048|ref|YP_003176821.1| - 5e-23 81.3 7.5 1e-19 70.6 0.1 3.1 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|257387048|ref|YP_003176821.1| - 4e-08 32.5 3.3 1.6e-06 27.2 1.9 2.7 2 1 0 2 2 2 1 Glucose inhibited division protein A FAD_oxidored PF12831.2 gi|257387048|ref|YP_003176821.1| - 1.3e-07 31.1 2.6 2.3e-07 30.2 1.8 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase DAO PF01266.19 gi|257387048|ref|YP_003176821.1| - 6.3e-07 28.6 18.4 0.0064 15.4 0.2 4.1 3 1 1 4 4 4 3 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|257387048|ref|YP_003176821.1| - 3.1e-06 26.4 7.6 0.0037 16.3 0.6 3.3 2 1 1 3 3 3 2 FAD binding domain HI0933_like PF03486.9 gi|257387048|ref|YP_003176821.1| - 2e-05 23.2 2.4 0.0089 14.5 0.1 3.3 4 0 0 4 4 4 1 HI0933-like protein NAD_binding_8 PF13450.1 gi|257387048|ref|YP_003176821.1| - 2.7e-05 24.1 3.3 0.0038 17.2 0.6 2.8 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.1 gi|257387048|ref|YP_003176821.1| - 3.4e-05 23.9 3.0 0.00017 21.7 1.4 2.5 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|257387048|ref|YP_003176821.1| - 4.8e-05 22.3 10.4 0.00012 21.0 1.4 3.6 4 0 0 4 4 4 1 FAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|257387048|ref|YP_003176821.1| - 0.0003 20.2 0.8 0.00091 18.6 0.0 2.0 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.13 gi|257387048|ref|YP_003176821.1| - 0.00031 20.4 1.0 0.0074 15.9 0.0 2.6 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain XdhC_C PF13478.1 gi|257387048|ref|YP_003176821.1| - 0.00041 20.6 0.2 0.018 15.3 0.0 2.6 2 0 0 2 2 2 1 XdhC Rossmann domain NAD_binding_7 PF13241.1 gi|257387048|ref|YP_003176821.1| - 0.0053 17.0 0.3 1.1 9.6 0.0 2.5 2 0 0 2 2 2 1 Putative NAD(P)-binding AlaDh_PNT_C PF01262.16 gi|257387048|ref|YP_003176821.1| - 0.011 15.2 2.0 0.058 12.9 0.0 2.3 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain CPSase_L_chain PF00289.17 gi|257387048|ref|YP_003176821.1| - 0.024 14.7 0.1 7.8 6.6 0.0 3.5 3 0 0 3 3 3 0 Carbamoyl-phosphate synthase L chain, N-terminal domain Trp_halogenase PF04820.9 gi|257387048|ref|YP_003176821.1| - 0.083 11.5 0.2 0.24 10.0 0.1 1.8 1 0 0 1 1 1 0 Tryptophan halogenase Abhydrolase_6 PF12697.2 gi|257387049|ref|YP_003176822.1| - 2.4e-40 138.8 8.4 2.7e-40 138.6 5.8 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|257387049|ref|YP_003176822.1| - 3.5e-20 72.5 0.1 6.2e-19 68.4 0.1 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|257387049|ref|YP_003176822.1| - 1.1e-19 70.6 0.5 5.6e-18 65.0 0.3 2.1 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_4 PF08386.5 gi|257387049|ref|YP_003176822.1| - 7.5e-06 25.7 0.0 2.1e-05 24.3 0.0 1.8 2 0 0 2 2 2 1 TAP-like protein Hydrolase_4 PF12146.3 gi|257387049|ref|YP_003176822.1| - 0.00011 22.0 0.0 0.0003 20.5 0.0 1.8 1 0 0 1 1 1 1 Putative lysophospholipase Abhydrolase_2 PF02230.11 gi|257387049|ref|YP_003176822.1| - 0.0012 18.2 0.2 0.038 13.4 0.0 2.7 3 0 0 3 3 3 1 Phospholipase/Carboxylesterase Ndr PF03096.9 gi|257387049|ref|YP_003176822.1| - 0.02 13.3 0.0 1.8 6.9 0.0 2.0 2 0 0 2 2 2 0 Ndr family Esterase PF00756.15 gi|257387049|ref|YP_003176822.1| - 0.022 14.1 0.0 0.03 13.7 0.0 1.3 1 0 0 1 1 1 0 Putative esterase Thioesterase PF00975.15 gi|257387049|ref|YP_003176822.1| - 0.023 14.9 0.0 0.033 14.4 0.0 1.2 1 0 0 1 1 1 0 Thioesterase domain MaoC_dehydratas PF01575.14 gi|257387050|ref|YP_003176823.1| - 4.3e-24 84.2 0.0 7.4e-24 83.4 0.0 1.3 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.1 gi|257387050|ref|YP_003176823.1| - 1.1e-09 38.1 0.0 3.3e-09 36.6 0.0 1.8 1 1 1 2 2 2 1 N-terminal half of MaoC dehydratase 4HBT_2 PF13279.1 gi|257387050|ref|YP_003176823.1| - 0.0028 18.0 0.0 0.0055 17.1 0.0 1.6 1 1 0 1 1 1 1 Thioesterase-like superfamily 4HBT PF03061.17 gi|257387050|ref|YP_003176823.1| - 0.015 15.3 0.0 0.041 14.0 0.0 1.9 1 1 0 1 1 1 0 Thioesterase superfamily PhnI PF05861.7 gi|257387051|ref|YP_003176824.1| - 0.01 14.3 0.1 0.012 14.1 0.1 1.0 1 0 0 1 1 1 0 Bacterial phosphonate metabolism protein (PhnI) Antitoxin-MazE PF04014.13 gi|257387051|ref|YP_003176824.1| - 0.082 12.6 0.3 0.13 12.0 0.2 1.3 1 0 0 1 1 1 0 Antidote-toxin recognition MazE AbrB-like PF14250.1 gi|257387051|ref|YP_003176824.1| - 0.1 12.4 0.0 0.13 12.1 0.0 1.3 1 0 0 1 1 1 0 AbrB-like transcriptional regulator Filament PF00038.16 gi|257387052|ref|YP_003176825.1| - 3.1e-05 23.6 15.8 4.1e-05 23.1 10.9 1.0 1 0 0 1 1 1 1 Intermediate filament protein FlxA PF14282.1 gi|257387052|ref|YP_003176825.1| - 0.00023 21.0 1.5 0.00023 21.0 1.0 2.1 2 0 0 2 2 2 1 FlxA-like protein DUF3584 PF12128.3 gi|257387052|ref|YP_003176825.1| - 0.00029 18.3 12.9 0.0017 15.8 8.8 1.9 1 1 0 1 1 1 1 Protein of unknown function (DUF3584) Cauli_AT PF03233.8 gi|257387052|ref|YP_003176825.1| - 0.0012 18.5 1.4 0.0025 17.5 0.1 1.9 1 1 0 2 2 2 1 Aphid transmission protein PilJ PF13675.1 gi|257387052|ref|YP_003176825.1| - 0.003 17.8 9.3 0.057 13.7 2.0 2.4 1 1 0 2 2 2 1 Type IV pili methyl-accepting chemotaxis transducer N-term NPV_P10 PF05531.7 gi|257387052|ref|YP_003176825.1| - 0.0048 17.1 10.5 0.017 15.3 4.1 2.8 2 1 0 2 2 2 1 Nucleopolyhedrovirus P10 protein Transposase_22 PF02994.9 gi|257387052|ref|YP_003176825.1| - 0.01 14.3 6.7 0.41 9.1 1.5 2.1 1 1 1 2 2 2 0 L1 transposable element Apolipoprotein PF01442.13 gi|257387052|ref|YP_003176825.1| - 0.011 15.3 15.5 0.23 10.9 4.2 2.6 1 1 1 2 2 2 0 Apolipoprotein A1/A4/E domain FlaC_arch PF05377.6 gi|257387052|ref|YP_003176825.1| - 0.024 14.5 6.0 0.35 10.8 1.0 3.4 3 0 0 3 3 3 0 Flagella accessory protein C (FlaC) AAA_13 PF13166.1 gi|257387052|ref|YP_003176825.1| - 0.025 13.0 7.5 0.029 12.8 5.2 1.0 1 0 0 1 1 1 0 AAA domain Laminin_II PF06009.7 gi|257387052|ref|YP_003176825.1| - 0.052 13.3 5.7 0.14 11.9 1.8 2.7 1 1 1 2 2 2 0 Laminin Domain II DUF883 PF05957.8 gi|257387052|ref|YP_003176825.1| - 0.053 13.9 11.3 0.11 12.9 3.2 2.9 1 1 2 3 3 3 0 Bacterial protein of unknown function (DUF883) YtxH PF12732.2 gi|257387052|ref|YP_003176825.1| - 0.055 13.8 10.1 1.3 9.4 3.2 3.1 2 1 0 2 2 2 0 YtxH-like protein Baculo_PEP_C PF04513.7 gi|257387052|ref|YP_003176825.1| - 0.068 12.9 6.0 2.2 8.1 0.7 2.3 1 1 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus Atg14 PF10186.4 gi|257387052|ref|YP_003176825.1| - 0.078 11.9 2.4 2.9 6.7 0.3 2.0 2 0 0 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 ApoO PF09769.4 gi|257387052|ref|YP_003176825.1| - 0.11 12.1 5.4 1.2 8.8 0.6 2.6 1 1 1 2 2 2 0 Apolipoprotein O DUF1664 PF07889.7 gi|257387052|ref|YP_003176825.1| - 0.12 12.1 7.2 1.8 8.3 2.1 2.8 1 1 2 3 3 3 0 Protein of unknown function (DUF1664) Prominin PF05478.6 gi|257387052|ref|YP_003176825.1| - 0.15 9.5 4.3 0.22 9.0 3.0 1.3 1 1 0 1 1 1 0 Prominin Snapin_Pallidin PF14712.1 gi|257387052|ref|YP_003176825.1| - 0.3 11.4 7.3 4.9 7.5 0.9 2.9 2 1 1 3 3 3 0 Snapin/Pallidin Tweety PF04906.8 gi|257387052|ref|YP_003176825.1| - 0.34 9.2 3.0 1.4 7.2 0.1 2.2 1 1 1 2 2 2 0 Tweety ApoLp-III PF07464.6 gi|257387052|ref|YP_003176825.1| - 0.35 10.8 11.9 2.5 8.0 1.1 3.1 1 1 1 2 2 2 0 Apolipophorin-III precursor (apoLp-III) Bacillus_HBL PF05791.6 gi|257387052|ref|YP_003176825.1| - 0.52 9.6 6.3 3 7.1 0.9 2.8 1 1 1 3 3 3 0 Bacillus haemolytic enterotoxin (HBL) ING PF12998.2 gi|257387052|ref|YP_003176825.1| - 0.65 10.3 6.7 2.2 8.5 0.2 3.1 2 1 1 3 3 3 0 Inhibitor of growth proteins N-terminal histone-binding WXG100 PF06013.7 gi|257387052|ref|YP_003176825.1| - 0.88 9.6 10.1 2.4 8.2 1.3 3.7 2 1 1 3 3 3 0 Proteins of 100 residues with WXG ISG65-75 PF11727.3 gi|257387052|ref|YP_003176825.1| - 1.1 8.2 6.2 0.55 9.2 2.3 1.8 1 1 0 1 1 1 0 Invariant surface glycoprotein DUF948 PF06103.6 gi|257387052|ref|YP_003176825.1| - 1.2 9.0 8.0 4.5 7.1 1.9 3.1 2 1 1 3 3 2 0 Bacterial protein of unknown function (DUF948) FliD_N PF02465.13 gi|257387052|ref|YP_003176825.1| - 1.2 9.5 6.3 4.3 7.7 0.4 2.2 2 0 0 2 2 2 0 Flagellar hook-associated protein 2 N-terminus COG2 PF06148.6 gi|257387052|ref|YP_003176825.1| - 1.5 8.6 8.6 7.6 6.4 2.2 3.2 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF4559 PF15112.1 gi|257387052|ref|YP_003176825.1| - 1.9 7.5 11.6 3.6 6.6 8.1 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4559) Spc7 PF08317.6 gi|257387052|ref|YP_003176825.1| - 2.1 6.8 10.8 0.17 10.4 3.1 2.0 1 1 0 2 2 2 0 Spc7 kinetochore protein Phasin_2 PF09361.5 gi|257387052|ref|YP_003176825.1| - 2.2 8.3 15.0 5.2 7.1 2.2 3.1 1 1 0 2 2 2 0 Phasin protein DUF3138 PF11336.3 gi|257387052|ref|YP_003176825.1| - 2.5 6.1 4.3 1 7.4 0.5 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3138) TPR_MLP1_2 PF07926.7 gi|257387052|ref|YP_003176825.1| - 2.6 7.8 16.2 73 3.1 11.2 2.4 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein DUF4407 PF14362.1 gi|257387052|ref|YP_003176825.1| - 3.4 6.5 11.6 75 2.1 8.0 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) SlyX PF04102.7 gi|257387052|ref|YP_003176825.1| - 4.5 7.7 16.2 1.5 9.2 2.4 3.5 2 2 1 3 3 3 0 SlyX Med9 PF07544.8 gi|257387052|ref|YP_003176825.1| - 4.5 7.0 8.5 4.8 6.9 1.7 3.3 4 0 0 4 4 4 0 RNA polymerase II transcription mediator complex subunit 9 SseC PF04888.7 gi|257387052|ref|YP_003176825.1| - 5.8 6.1 16.6 0.84 8.9 3.8 2.1 1 1 1 2 2 2 0 Secretion system effector C (SseC) like family Fib_alpha PF08702.5 gi|257387052|ref|YP_003176825.1| - 6.6 6.8 7.1 8.9 6.4 0.4 2.6 1 1 2 3 3 3 0 Fibrinogen alpha/beta chain family TMPIT PF07851.8 gi|257387052|ref|YP_003176825.1| - 7.6 5.4 9.3 1.7 7.6 1.7 2.0 1 1 0 2 2 2 0 TMPIT-like protein Phage_GP20 PF06810.6 gi|257387052|ref|YP_003176825.1| - 8.2 5.8 11.0 2.8 7.3 4.0 2.7 2 1 0 2 2 2 0 Phage minor structural protein GP20 PHA_synth_III_E PF09712.5 gi|257387053|ref|YP_003176826.1| - 8e-12 45.1 2.5 8e-12 45.1 1.7 2.2 1 1 1 2 2 2 1 Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E) Phasin PF05597.6 gi|257387053|ref|YP_003176826.1| - 0.0016 18.2 1.8 0.0016 18.2 1.2 2.5 1 1 1 2 2 2 1 Poly(hydroxyalcanoate) granule associated protein (phasin) WXG100 PF06013.7 gi|257387053|ref|YP_003176826.1| - 0.013 15.5 12.9 2.9 7.9 0.2 4.0 4 0 0 4 4 4 0 Proteins of 100 residues with WXG APG17 PF04108.7 gi|257387053|ref|YP_003176826.1| - 0.017 13.9 2.1 0.8 8.4 0.1 2.2 2 0 0 2 2 2 0 Autophagy protein Apg17 BMFP PF04380.8 gi|257387053|ref|YP_003176826.1| - 0.047 13.8 12.3 0.15 12.2 2.4 2.6 2 1 1 3 3 3 0 Membrane fusogenic activity Glyco_hydro_67C PF07477.7 gi|257387053|ref|YP_003176826.1| - 0.097 12.0 4.1 0.084 12.2 1.4 2.0 2 1 0 2 2 2 0 Glycosyl hydrolase family 67 C-terminus PMC2NT PF08066.7 gi|257387053|ref|YP_003176826.1| - 0.13 12.6 4.7 0.28 11.4 0.0 2.9 2 2 1 3 3 3 0 PMC2NT (NUC016) domain DUF4083 PF13314.1 gi|257387053|ref|YP_003176826.1| - 0.13 12.1 1.2 0.24 11.2 0.8 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4083) DUF4259 PF14078.1 gi|257387053|ref|YP_003176826.1| - 0.23 11.9 8.4 0.077 13.4 3.2 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4259) DUF445 PF04286.7 gi|257387053|ref|YP_003176826.1| - 0.42 10.1 8.0 0.19 11.2 1.2 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF445) TarH PF02203.10 gi|257387053|ref|YP_003176826.1| - 0.64 9.8 6.7 6.2 6.6 0.1 2.3 2 0 0 2 2 2 0 Tar ligand binding domain homologue Dak2 PF02734.12 gi|257387053|ref|YP_003176826.1| - 0.7 9.5 4.6 0.68 9.5 1.3 2.2 2 1 0 2 2 2 0 DAK2 domain Sipho_Gp157 PF05565.6 gi|257387053|ref|YP_003176826.1| - 0.74 9.3 6.4 2.2 7.8 0.2 2.1 2 0 0 2 2 2 0 Siphovirus Gp157 TipAS PF07739.8 gi|257387053|ref|YP_003176826.1| - 0.83 9.9 10.7 0.14 12.4 3.5 2.3 2 1 0 2 2 2 0 TipAS antibiotic-recognition domain Seryl_tRNA_N PF02403.17 gi|257387053|ref|YP_003176826.1| - 0.88 9.6 5.9 2.1 8.3 0.3 2.5 2 1 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain DUF2262 PF10020.4 gi|257387053|ref|YP_003176826.1| - 1.3 9.2 8.4 1.6 8.9 3.9 2.3 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2262) FliD_C PF07195.7 gi|257387053|ref|YP_003176826.1| - 1.7 7.8 4.9 21 4.2 3.4 2.1 1 1 0 1 1 1 0 Flagellar hook-associated protein 2 C-terminus PEP-utilisers_N PF05524.8 gi|257387053|ref|YP_003176826.1| - 2.1 8.1 9.2 0.15 11.8 1.3 2.4 2 1 0 2 2 2 0 PEP-utilising enzyme, N-terminal DUF3150 PF11348.3 gi|257387053|ref|YP_003176826.1| - 2.2 7.2 5.6 4.5 6.2 3.9 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF3150) Nsp1_C PF05064.8 gi|257387053|ref|YP_003176826.1| - 2.7 7.6 8.6 0.48 10.0 0.6 2.6 2 1 0 3 3 3 0 Nsp1-like C-terminal region V_ATPase_I PF01496.14 gi|257387053|ref|YP_003176826.1| - 3 5.5 5.5 0.4 8.4 0.4 1.7 2 0 0 2 2 2 0 V-type ATPase 116kDa subunit family BLOC1_2 PF10046.4 gi|257387053|ref|YP_003176826.1| - 3.6 7.7 6.9 4.1 7.6 0.7 2.9 2 2 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 PhaP_Bmeg PF09602.5 gi|257387053|ref|YP_003176826.1| - 4.6 7.0 12.6 9.3 6.0 5.3 2.4 1 1 1 2 2 2 0 Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg) YtxH PF12732.2 gi|257387053|ref|YP_003176826.1| - 4.7 7.6 7.9 6.3 7.2 0.9 2.9 2 1 0 2 2 2 0 YtxH-like protein DUF29 PF01724.11 gi|257387053|ref|YP_003176826.1| - 5.9 6.7 7.6 10 5.9 0.9 2.7 2 1 0 2 2 2 0 Domain of unknown function DUF29 Abhydrolase_1 PF00561.15 gi|257387054|ref|YP_003176827.1| - 3.5e-14 52.9 0.0 9.3e-14 51.5 0.0 1.6 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.2 gi|257387054|ref|YP_003176827.1| - 1.4e-10 41.4 0.0 4.5e-10 39.8 0.0 1.8 2 0 0 2 2 2 1 Alpha/beta hydrolase family HHH_5 PF14520.1 gi|257387054|ref|YP_003176827.1| - 3.5e-09 36.7 0.3 7.6e-09 35.6 0.2 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix domain PhaC_N PF07167.8 gi|257387054|ref|YP_003176827.1| - 7e-08 32.0 0.0 1.2e-07 31.3 0.0 1.3 1 0 0 1 1 1 1 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus Abhydrolase_5 PF12695.2 gi|257387054|ref|YP_003176827.1| - 9.1e-08 31.9 0.0 1.3e-06 28.2 0.0 2.3 1 1 0 1 1 1 1 Alpha/beta hydrolase family DUF3141 PF11339.3 gi|257387054|ref|YP_003176827.1| - 6.4e-06 24.7 0.0 0.0073 14.6 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF3141) DLH PF01738.13 gi|257387054|ref|YP_003176827.1| - 1.9e-05 24.0 0.0 0.011 14.9 0.0 2.6 2 0 0 2 2 2 2 Dienelactone hydrolase family DUF4332 PF14229.1 gi|257387054|ref|YP_003176827.1| - 0.00021 21.2 0.0 0.0004 20.3 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4332) PHB_depo_C PF06850.6 gi|257387054|ref|YP_003176827.1| - 0.00033 19.9 0.0 0.00062 19.0 0.0 1.5 1 0 0 1 1 1 1 PHB de-polymerase C-terminus DNA_pol_lambd_f PF10391.4 gi|257387054|ref|YP_003176827.1| - 0.00038 19.9 0.0 0.00094 18.6 0.0 1.6 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda Cdd1 PF11731.3 gi|257387054|ref|YP_003176827.1| - 0.0018 18.1 0.0 0.0046 16.8 0.0 1.6 1 0 0 1 1 1 1 Pathogenicity locus FSH1 PF03959.8 gi|257387054|ref|YP_003176827.1| - 0.0082 15.6 0.0 0.15 11.4 0.0 2.1 2 0 0 2 2 2 1 Serine hydrolase (FSH1) PTRF_SDPR PF15237.1 gi|257387054|ref|YP_003176827.1| - 0.029 13.7 0.1 3.6 6.9 0.0 2.1 2 0 0 2 2 2 0 PTRF/SDPR family DUF2048 PF09752.4 gi|257387054|ref|YP_003176827.1| - 0.039 12.8 0.2 0.071 11.9 0.1 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2048) Nitro_FeMo-Co PF02579.12 gi|257387054|ref|YP_003176827.1| - 0.094 12.8 0.1 0.26 11.4 0.0 1.7 1 0 0 1 1 1 0 Dinitrogenase iron-molybdenum cofactor adh_short PF00106.20 gi|257387055|ref|YP_003176828.1| - 1.4e-42 145.4 3.0 1.9e-42 145.0 2.1 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|257387055|ref|YP_003176828.1| - 2e-26 93.2 0.0 2.2e-26 93.0 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|257387055|ref|YP_003176828.1| - 6.3e-26 91.1 1.6 8.4e-26 90.7 1.1 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|257387055|ref|YP_003176828.1| - 0.00027 20.4 0.6 0.00036 20.0 0.4 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3HCDH_N PF02737.13 gi|257387055|ref|YP_003176828.1| - 0.045 13.4 0.4 0.08 12.5 0.3 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain THF_DHG_CYH_C PF02882.14 gi|257387055|ref|YP_003176828.1| - 0.13 11.3 0.7 0.45 9.5 0.1 2.0 1 1 1 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Eno-Rase_NADH_b PF12242.3 gi|257387055|ref|YP_003176828.1| - 0.43 10.4 3.9 0.14 12.0 0.4 2.0 2 1 0 2 2 2 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase DNA_primase_lrg PF04104.9 gi|257387056|ref|YP_003176829.1| - 3.1e-36 124.9 0.0 5.6e-36 124.1 0.0 1.4 1 0 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit DUF998 PF06197.8 gi|257387057|ref|YP_003176830.1| - 0.0083 15.4 2.0 0.0092 15.3 1.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF998) DUF4013 PF13197.1 gi|257387057|ref|YP_003176830.1| - 0.013 14.8 4.3 0.016 14.5 3.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF4013) DUF4293 PF14126.1 gi|257387057|ref|YP_003176830.1| - 0.019 14.8 0.7 0.023 14.5 0.5 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4293) Bax1-I PF01027.15 gi|257387057|ref|YP_003176830.1| - 0.056 13.0 1.9 0.071 12.6 1.3 1.2 1 0 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 CbtA PF09490.5 gi|257387057|ref|YP_003176830.1| - 0.073 12.3 2.1 0.09 12.0 1.4 1.0 1 0 0 1 1 1 0 Probable cobalt transporter subunit (CbtA) BCHF PF07284.6 gi|257387057|ref|YP_003176830.1| - 0.075 12.8 0.2 0.085 12.7 0.2 1.0 1 0 0 1 1 1 0 2-vinyl bacteriochlorophyllide hydratase (BCHF) CopD PF05425.8 gi|257387057|ref|YP_003176830.1| - 0.091 12.9 6.2 0.11 12.7 4.3 1.1 1 0 0 1 1 1 0 Copper resistance protein D BPD_transp_1 PF00528.17 gi|257387057|ref|YP_003176830.1| - 0.095 12.2 3.4 0.11 11.9 2.4 1.0 1 0 0 1 1 1 0 Binding-protein-dependent transport system inner membrane component SHR3_chaperone PF08229.6 gi|257387057|ref|YP_003176830.1| - 0.11 11.4 1.4 0.13 11.1 1.0 1.1 1 0 0 1 1 1 0 ER membrane protein SH3 TPPK_C PF12555.3 gi|257387057|ref|YP_003176830.1| - 0.41 10.3 7.4 1.4 8.6 1.1 2.1 2 0 0 2 2 2 0 Thiamine pyrophosphokinase C terminal ATP1G1_PLM_MAT8 PF02038.11 gi|257387057|ref|YP_003176830.1| - 0.55 9.2 0.1 0.55 9.2 0.1 1.9 2 0 0 2 2 2 0 ATP1G1/PLM/MAT8 family Tad PF13400.1 gi|257387057|ref|YP_003176830.1| - 0.62 10.1 9.5 4 7.5 2.0 2.1 2 0 0 2 2 2 0 Putative Flp pilus-assembly TadE/G-like DUF2964 PF11177.3 gi|257387057|ref|YP_003176830.1| - 0.9 9.5 10.3 1.8 8.5 7.1 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2964) Pox_I5 PF04713.7 gi|257387057|ref|YP_003176830.1| - 2 8.2 5.8 0.65 9.7 0.5 2.0 1 1 1 2 2 2 0 Poxvirus protein I5 RHH_1 PF01402.16 gi|257387058|ref|YP_003176831.1| - 8.5e-06 25.4 1.2 0.00013 21.7 0.0 2.2 1 1 1 2 2 2 2 Ribbon-helix-helix protein, copG family TatC PF00902.13 gi|257387059|ref|YP_003176832.1| - 8e-67 224.7 32.1 1.8e-40 138.6 3.7 3.1 3 0 0 3 3 3 2 Sec-independent protein translocase protein (TatC) DUF2951 PF11166.3 gi|257387059|ref|YP_003176832.1| - 0.04 13.7 0.0 0.093 12.5 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2951) T2SM PF04612.7 gi|257387059|ref|YP_003176832.1| - 0.066 12.9 2.0 4.6 7.0 0.1 2.9 2 0 0 2 2 2 0 Type II secretion system (T2SS), protein M TatC PF00902.13 gi|257387060|ref|YP_003176833.1| - 3e-39 134.6 11.3 4.2e-39 134.1 7.8 1.2 1 0 0 1 1 1 1 Sec-independent protein translocase protein (TatC) zf-DHHC PF01529.15 gi|257387060|ref|YP_003176833.1| - 0.39 10.0 2.1 0.72 9.2 1.5 1.4 1 0 0 1 1 1 0 DHHC palmitoyltransferase YfhO PF09586.5 gi|257387060|ref|YP_003176833.1| - 3.6 5.4 6.4 5.8 4.8 4.5 1.3 1 0 0 1 1 1 0 Bacterial membrane protein YfhO HATPase_c PF02518.21 gi|257387061|ref|YP_003176834.1| - 9.9e-20 70.3 0.1 1.6e-19 69.6 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|257387061|ref|YP_003176834.1| - 5.6e-09 35.8 3.0 9.3e-09 35.1 1.7 1.7 1 1 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.1 gi|257387061|ref|YP_003176834.1| - 0.00039 20.1 0.0 0.00064 19.3 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|257387061|ref|YP_003176834.1| - 0.0026 17.5 0.0 0.0061 16.3 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain Vwaint PF14624.1 gi|257387061|ref|YP_003176834.1| - 0.054 13.6 0.1 0.19 11.8 0.0 1.8 2 0 0 2 2 2 0 VWA / Hh protein intein-like Asn_synthase PF00733.16 gi|257387062|ref|YP_003176835.1| - 9.2e-11 41.7 0.6 1.5e-10 40.9 0.3 1.4 1 1 0 1 1 1 1 Asparagine synthase tRNA_Me_trans PF03054.11 gi|257387062|ref|YP_003176835.1| - 3.5e-10 38.9 0.1 1.7e-06 26.8 0.1 2.3 2 0 0 2 2 2 2 tRNA methyl transferase NAD_synthase PF02540.12 gi|257387062|ref|YP_003176835.1| - 2.6e-09 36.3 0.0 6e-09 35.1 0.0 1.5 2 0 0 2 2 2 1 NAD synthase QueC PF06508.8 gi|257387062|ref|YP_003176835.1| - 0.00014 21.1 0.0 0.0006 19.1 0.0 1.9 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.15 gi|257387062|ref|YP_003176835.1| - 0.00034 20.1 0.2 0.0026 17.2 0.1 2.1 1 1 0 1 1 1 1 PP-loop family Arginosuc_synth PF00764.14 gi|257387062|ref|YP_003176835.1| - 0.0065 15.5 0.1 0.01 14.9 0.0 1.3 1 0 0 1 1 1 1 Arginosuccinate synthase PAPS_reduct PF01507.14 gi|257387062|ref|YP_003176835.1| - 0.04 13.7 0.0 0.2 11.4 0.0 1.8 1 1 1 2 2 2 0 Phosphoadenosine phosphosulfate reductase family DUF208 PF02677.9 gi|257387062|ref|YP_003176835.1| - 0.065 13.0 0.1 0.14 11.8 0.0 1.5 2 0 0 2 2 2 0 Uncharacterized BCR, COG1636 RNase_H_2 PF13482.1 gi|257387063|ref|YP_003176836.1| - 2.5e-34 118.4 0.0 3.3e-34 118.0 0.0 1.1 1 0 0 1 1 1 1 RNase_H superfamily HHH_5 PF14520.1 gi|257387063|ref|YP_003176836.1| - 0.00029 20.9 0.0 0.0019 18.3 0.0 2.3 2 1 0 2 2 2 1 Helix-hairpin-helix domain DNA_pol_A_exo1 PF01612.15 gi|257387063|ref|YP_003176836.1| - 0.003 17.0 0.1 0.0083 15.6 0.1 1.7 1 1 0 1 1 1 1 3'-5' exonuclease DNA_pol_B_exo1 PF03104.14 gi|257387063|ref|YP_003176836.1| - 0.035 12.9 0.1 1.2 7.9 0.0 2.1 1 1 0 2 2 2 0 DNA polymerase family B, exonuclease domain DNA_pol_B_exo2 PF10108.4 gi|257387063|ref|YP_003176836.1| - 0.037 13.5 0.0 0.24 10.9 0.0 2.0 1 1 1 2 2 2 0 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB RNase_T PF00929.19 gi|257387063|ref|YP_003176836.1| - 0.15 12.3 0.1 6.3 7.0 0.0 2.2 1 1 1 2 2 2 0 Exonuclease Rhomboid PF01694.17 gi|257387064|ref|YP_003176837.1| - 1.8e-22 79.9 9.8 3e-22 79.2 6.8 1.3 1 0 0 1 1 1 1 Rhomboid family DUF1751 PF08551.5 gi|257387064|ref|YP_003176837.1| - 9.2e-06 25.9 1.8 1.5e-05 25.2 0.1 2.1 2 1 0 2 2 2 1 Eukaryotic integral membrane protein (DUF1751) AAA_16 PF13191.1 gi|257387065|ref|YP_003176838.1| - 1.3e-13 51.3 0.5 8.4e-12 45.4 0.0 2.8 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|257387065|ref|YP_003176838.1| - 7.1e-09 35.8 0.0 1.5e-08 34.8 0.0 1.5 1 0 0 1 1 1 1 AAA domain Cdc6_C PF09079.6 gi|257387065|ref|YP_003176838.1| - 1.5e-07 31.0 0.0 4.5e-07 29.5 0.0 1.9 1 0 0 1 1 1 1 CDC6, C terminal AAA PF00004.24 gi|257387065|ref|YP_003176838.1| - 7.7e-06 26.1 0.0 1.9e-05 24.8 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.1 gi|257387065|ref|YP_003176838.1| - 0.00042 20.0 0.5 0.0061 16.2 0.0 2.6 2 0 0 2 2 2 1 Part of AAA domain AAA_33 PF13671.1 gi|257387065|ref|YP_003176838.1| - 0.00057 19.7 0.0 0.0026 17.6 0.0 2.1 1 1 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|257387065|ref|YP_003176838.1| - 0.0013 18.4 0.0 0.0034 17.1 0.0 1.8 1 1 0 1 1 1 1 Archaeal ATPase RuvB_N PF05496.7 gi|257387065|ref|YP_003176838.1| - 0.0017 17.4 0.0 0.0035 16.4 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus Gtr1_RagA PF04670.7 gi|257387065|ref|YP_003176838.1| - 0.0019 17.3 0.0 0.0031 16.6 0.0 1.3 1 0 0 1 1 1 1 Gtr1/RagA G protein conserved region IstB_IS21 PF01695.12 gi|257387065|ref|YP_003176838.1| - 0.0023 17.3 0.3 0.025 13.9 0.2 2.4 1 1 0 1 1 1 1 IstB-like ATP binding protein T2SE PF00437.15 gi|257387065|ref|YP_003176838.1| - 0.0049 15.7 0.0 0.0095 14.8 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_18 PF13238.1 gi|257387065|ref|YP_003176838.1| - 0.0055 17.0 0.0 0.037 14.3 0.0 2.6 2 1 0 2 2 2 1 AAA domain Sigma54_activat PF00158.21 gi|257387065|ref|YP_003176838.1| - 0.0056 16.1 0.0 0.011 15.2 0.0 1.4 1 0 0 1 1 1 1 Sigma-54 interaction domain AAA_35 PF14516.1 gi|257387065|ref|YP_003176838.1| - 0.0072 15.0 0.1 0.05 12.2 0.0 2.1 1 1 1 2 2 2 1 AAA-like domain NACHT PF05729.7 gi|257387065|ref|YP_003176838.1| - 0.014 15.0 0.0 0.036 13.7 0.0 1.7 2 0 0 2 2 2 0 NACHT domain AAA_17 PF13207.1 gi|257387065|ref|YP_003176838.1| - 0.017 15.9 0.8 0.096 13.5 0.5 2.5 1 1 0 1 1 1 0 AAA domain AAA_11 PF13086.1 gi|257387065|ref|YP_003176838.1| - 0.026 14.1 0.0 0.036 13.6 0.0 1.4 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|257387065|ref|YP_003176838.1| - 0.039 13.8 0.0 0.5 10.2 0.0 2.2 1 1 1 2 2 2 0 AAA domain AAA_30 PF13604.1 gi|257387065|ref|YP_003176838.1| - 0.043 13.3 1.1 0.39 10.2 0.0 2.5 2 1 1 3 3 3 0 AAA domain RNA_helicase PF00910.17 gi|257387065|ref|YP_003176838.1| - 0.053 13.6 0.0 0.16 12.1 0.0 1.9 1 0 0 1 1 1 0 RNA helicase Penicillinase_R PF03965.11 gi|257387065|ref|YP_003176838.1| - 0.063 13.3 0.0 0.18 11.9 0.0 1.8 2 0 0 2 2 1 0 Penicillinase repressor Mg_chelatase PF01078.16 gi|257387065|ref|YP_003176838.1| - 0.095 11.8 0.0 0.16 11.1 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Rad17 PF03215.10 gi|257387065|ref|YP_003176838.1| - 0.16 10.6 0.0 0.23 10.0 0.0 1.3 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein Na_H_Exchanger PF00999.16 gi|257387066|ref|YP_003176839.1| - 0.016 13.7 1.0 0.016 13.7 0.7 1.8 1 1 1 2 2 2 0 Sodium/hydrogen exchanger family DUF1418 PF07214.7 gi|257387066|ref|YP_003176839.1| - 0.033 13.7 0.7 0.033 13.7 0.5 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF1418) DUF3290 PF11694.3 gi|257387066|ref|YP_003176839.1| - 0.051 13.3 0.3 0.063 13.0 0.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3290) DUF3180 PF11377.3 gi|257387066|ref|YP_003176839.1| - 0.067 13.0 3.8 0.078 12.8 0.7 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3180) DUF4064 PF13273.1 gi|257387066|ref|YP_003176839.1| - 0.17 11.9 3.3 0.38 10.8 0.6 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF4064) DUF2975 PF11188.3 gi|257387066|ref|YP_003176839.1| - 0.24 11.1 5.2 0.2 11.3 0.8 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2975) FtsX PF02687.16 gi|257387066|ref|YP_003176839.1| - 0.48 10.1 4.7 1.2 8.9 3.3 1.7 1 1 0 1 1 1 0 FtsX-like permease family DUF2545 PF10810.3 gi|257387066|ref|YP_003176839.1| - 0.49 10.8 5.2 0.23 11.8 0.9 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2545) Pox_A14 PF05767.7 gi|257387066|ref|YP_003176839.1| - 0.54 10.2 7.3 3.3 7.7 0.3 2.1 1 1 1 2 2 2 0 Poxvirus virion envelope protein A14 Ost4 PF10215.4 gi|257387066|ref|YP_003176839.1| - 0.56 9.7 6.6 0.46 10.0 0.4 2.4 2 0 0 2 2 2 0 Oligosaccaryltransferase DUF308 PF03729.8 gi|257387066|ref|YP_003176839.1| - 0.85 9.6 9.6 0.5 10.3 1.8 2.5 1 1 1 2 2 2 0 Short repeat of unknown function (DUF308) EamA PF00892.15 gi|257387066|ref|YP_003176839.1| - 0.89 9.6 6.6 0.47 10.4 1.0 2.0 1 1 1 2 2 2 0 EamA-like transporter family DUF3185 PF11381.3 gi|257387066|ref|YP_003176839.1| - 8.5 6.2 10.2 1.5 8.6 3.6 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF3185) Copper-bind PF00127.15 gi|257387067|ref|YP_003176840.1| - 3.6e-16 59.2 0.0 5.2e-16 58.7 0.0 1.2 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.1 gi|257387067|ref|YP_003176840.1| - 0.00022 21.0 0.0 0.00038 20.3 0.0 1.4 1 1 0 1 1 1 1 Cupredoxin-like domain TAT_signal PF10518.4 gi|257387067|ref|YP_003176840.1| - 0.053 13.5 5.4 0.053 13.5 3.7 1.7 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence PKD PF00801.15 gi|257387067|ref|YP_003176840.1| - 0.074 12.8 2.3 0.33 10.7 1.6 2.1 1 1 0 1 1 1 0 PKD domain MutS_V PF00488.16 gi|257387068|ref|YP_003176841.1| - 4.7e-07 29.4 0.0 1.1e-06 28.2 0.0 1.5 1 1 0 1 1 1 1 MutS domain V HHH PF00633.18 gi|257387068|ref|YP_003176841.1| - 7.3e-06 25.3 1.9 0.0058 16.2 0.1 3.0 2 0 0 2 2 2 2 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|257387068|ref|YP_003176841.1| - 8.5e-05 22.6 2.3 8.5e-05 22.6 1.6 2.9 2 1 0 2 2 2 1 Helix-hairpin-helix domain HasA PF06438.7 gi|257387068|ref|YP_003176841.1| - 0.051 12.9 0.5 4.3 6.6 0.1 2.4 2 0 0 2 2 2 0 Heme-binding protein A (HasA) AAA_10 PF12846.2 gi|257387068|ref|YP_003176841.1| - 0.16 11.3 1.5 0.52 9.6 0.0 2.3 2 0 0 2 2 2 0 AAA-like domain Usp PF00582.21 gi|257387069|ref|YP_003176842.1| - 9.4e-09 35.5 2.1 1.2e-08 35.1 1.5 1.2 1 0 0 1 1 1 1 Universal stress protein family DUF2868 PF11067.3 gi|257387069|ref|YP_003176842.1| - 0.0035 16.5 0.4 0.17 10.9 0.3 1.9 1 1 1 2 2 2 2 Protein of unknown function (DUF2868) SurE PF01975.12 gi|257387069|ref|YP_003176842.1| - 0.094 11.9 0.0 0.17 11.1 0.0 1.4 1 1 0 1 1 1 0 Survival protein SurE ABC-3 PF00950.12 gi|257387071|ref|YP_003176844.1| - 1.6e-58 197.9 36.3 2.2e-58 197.5 25.1 1.2 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.13 gi|257387071|ref|YP_003176844.1| - 0.00042 19.2 34.9 0.00042 19.2 24.2 2.0 1 1 0 1 1 1 1 FecCD transport family ABC_tran PF00005.22 gi|257387072|ref|YP_003176845.1| - 2.6e-29 102.2 0.0 3.5e-29 101.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|257387072|ref|YP_003176845.1| - 2.3e-10 40.9 0.0 0.00015 21.8 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|257387072|ref|YP_003176845.1| - 4.7e-05 22.7 0.1 0.00074 18.8 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|257387072|ref|YP_003176845.1| - 0.00047 20.2 1.4 0.0013 18.7 1.0 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.1 gi|257387072|ref|YP_003176845.1| - 0.00085 18.8 0.0 0.0017 17.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SbcCD_C PF13558.1 gi|257387072|ref|YP_003176845.1| - 0.0024 17.7 0.2 0.084 12.8 0.1 2.4 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_25 PF13481.1 gi|257387072|ref|YP_003176845.1| - 0.0024 17.3 0.9 0.0077 15.6 0.6 1.9 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|257387072|ref|YP_003176845.1| - 0.003 17.4 0.1 0.017 15.0 0.1 2.0 1 1 0 1 1 1 1 AAA domain adh_short PF00106.20 gi|257387072|ref|YP_003176845.1| - 0.0075 16.1 2.5 1.8 8.4 0.2 2.1 2 0 0 2 2 2 2 short chain dehydrogenase AAA_23 PF13476.1 gi|257387072|ref|YP_003176845.1| - 0.017 15.4 0.0 0.024 14.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain ArgK PF03308.11 gi|257387072|ref|YP_003176845.1| - 0.02 13.6 0.3 0.038 12.7 0.0 1.5 2 0 0 2 2 2 0 ArgK protein AAA_10 PF12846.2 gi|257387072|ref|YP_003176845.1| - 0.035 13.5 0.1 0.066 12.6 0.0 1.3 1 1 0 1 1 1 0 AAA-like domain AAA_22 PF13401.1 gi|257387072|ref|YP_003176845.1| - 0.045 13.9 0.1 0.14 12.3 0.1 1.8 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|257387072|ref|YP_003176845.1| - 0.075 12.2 0.0 0.22 10.6 0.0 1.6 1 1 0 2 2 2 0 Protein of unknown function, DUF258 IstB_IS21 PF01695.12 gi|257387072|ref|YP_003176845.1| - 0.08 12.3 0.1 6.9 6.0 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein DUF87 PF01935.12 gi|257387072|ref|YP_003176845.1| - 0.085 12.6 0.0 0.18 11.6 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function DUF87 AAA_17 PF13207.1 gi|257387072|ref|YP_003176845.1| - 0.13 13.0 0.7 0.3 11.9 0.5 2.0 1 1 0 1 1 1 0 AAA domain TroA PF01297.12 gi|257387073|ref|YP_003176846.1| - 1.1e-53 182.1 0.0 1.2e-53 182.0 0.0 1.0 1 0 0 1 1 1 1 Periplasmic solute binding protein family Lysine_decarbox PF03641.9 gi|257387074|ref|YP_003176847.1| - 6.8e-07 29.1 1.9 8.3e-07 28.8 0.2 1.8 1 1 1 2 2 2 1 Possible lysine decarboxylase DNA_processg_A PF02481.10 gi|257387074|ref|YP_003176847.1| - 0.004 16.0 2.2 0.0097 14.8 1.5 1.7 1 1 0 1 1 1 1 DNA recombination-mediator protein A AA_kinase PF00696.23 gi|257387074|ref|YP_003176847.1| - 0.32 10.5 1.7 3.6 7.0 0.2 2.0 1 1 1 2 2 2 0 Amino acid kinase family TOBE_3 PF12857.2 gi|257387075|ref|YP_003176848.1| - 0.022 14.5 0.1 0.048 13.5 0.1 1.6 1 0 0 1 1 1 0 TOBE-like domain DUF3040 PF11239.3 gi|257387075|ref|YP_003176848.1| - 0.054 13.5 12.3 0.073 13.1 3.6 2.7 1 1 1 2 2 2 0 Protein of unknown function (DUF3040) DUF1345 PF07077.6 gi|257387075|ref|YP_003176848.1| - 0.062 12.8 0.7 0.54 9.7 0.5 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1345) APG17 PF04108.7 gi|257387075|ref|YP_003176848.1| - 0.078 11.7 0.0 0.08 11.7 0.0 1.0 1 0 0 1 1 1 0 Autophagy protein Apg17 DUF872 PF05915.7 gi|257387075|ref|YP_003176848.1| - 0.085 12.7 6.8 0.4 10.5 0.9 2.2 1 1 1 2 2 2 0 Eukaryotic protein of unknown function (DUF872) DUF805 PF05656.9 gi|257387075|ref|YP_003176848.1| - 0.14 11.9 0.2 0.14 11.9 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF805) 7TMR-DISM_7TM PF07695.6 gi|257387075|ref|YP_003176848.1| - 0.32 10.6 5.3 0.48 10.0 3.7 1.3 1 0 0 1 1 1 0 7TM diverse intracellular signalling Trp_oprn_chp PF09534.5 gi|257387075|ref|YP_003176848.1| - 0.35 10.4 7.0 0.62 9.6 4.8 1.4 1 0 0 1 1 1 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) DUF998 PF06197.8 gi|257387075|ref|YP_003176848.1| - 0.7 9.1 20.2 0.17 11.2 11.3 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF998) TctB PF07331.6 gi|257387075|ref|YP_003176848.1| - 1.1 8.9 13.6 3.3 7.3 9.6 1.6 1 1 1 2 2 2 0 Tripartite tricarboxylate transporter TctB family DUF3185 PF11381.3 gi|257387075|ref|YP_003176848.1| - 1.2 8.9 7.6 4.7 7.0 0.5 2.9 2 1 0 2 2 2 0 Protein of unknown function (DUF3185) GIDE PF12483.3 gi|257387076|ref|YP_003176849.1| - 3e-07 29.9 0.0 1e-06 28.1 0.0 1.9 2 1 0 2 2 2 1 E3 Ubiquitin ligase PCNA_N PF00705.13 gi|257387077|ref|YP_003176850.1| - 3.2e-10 39.5 0.1 7.3e-10 38.4 0.1 1.5 1 0 0 1 1 1 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.10 gi|257387077|ref|YP_003176850.1| - 4.8e-05 23.2 0.0 0.00012 21.9 0.0 1.8 2 1 0 2 2 2 1 Proliferating cell nuclear antigen, C-terminal domain Rad9 PF04139.8 gi|257387077|ref|YP_003176850.1| - 0.075 12.1 0.0 0.12 11.4 0.0 1.3 1 0 0 1 1 1 0 Rad9 Cu-oxidase_3 PF07732.10 gi|257387078|ref|YP_003176851.1| - 6.2e-13 48.5 0.0 1.4e-12 47.3 0.0 1.6 1 0 0 1 1 1 1 Multicopper oxidase Cu-oxidase_2 PF07731.9 gi|257387078|ref|YP_003176851.1| - 7.3e-08 32.0 0.1 2.3e-05 23.9 0.0 3.2 3 0 0 3 3 3 1 Multicopper oxidase Copper-bind PF00127.15 gi|257387078|ref|YP_003176851.1| - 1.1e-05 25.5 0.3 0.00023 21.3 0.0 2.6 2 1 0 2 2 2 1 Copper binding proteins, plastocyanin/azurin family TAT_signal PF10518.4 gi|257387078|ref|YP_003176851.1| - 0.0032 17.3 4.2 0.0064 16.3 2.9 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Cupredoxin_1 PF13473.1 gi|257387078|ref|YP_003176851.1| - 0.0066 16.3 0.0 0.027 14.3 0.0 2.1 2 1 0 2 2 2 1 Cupredoxin-like domain MCPsignal PF00015.16 gi|257387079|ref|YP_003176852.1| - 1.1e-46 159.1 36.6 1.1e-46 159.1 25.4 4.5 3 1 2 5 5 5 1 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.20 gi|257387079|ref|YP_003176852.1| - 2.2e-16 59.7 6.3 6.7e-15 55.0 0.5 5.7 5 2 0 5 5 4 2 HAMP domain Syntaxin PF00804.20 gi|257387079|ref|YP_003176852.1| - 0.0081 16.3 3.0 0.0081 16.3 2.1 5.8 2 2 2 4 4 4 1 Syntaxin GnsAB PF08178.6 gi|257387079|ref|YP_003176852.1| - 0.016 14.8 0.5 3.5 7.3 0.1 2.8 2 0 0 2 2 2 0 GnsA/GnsB family DUF1664 PF07889.7 gi|257387079|ref|YP_003176852.1| - 0.07 12.9 29.9 0.32 10.7 2.9 5.4 3 1 1 5 5 5 0 Protein of unknown function (DUF1664) AAA_27 PF13514.1 gi|257387079|ref|YP_003176852.1| - 0.19 9.3 57.7 0.32 8.6 26.8 2.2 1 1 1 2 2 2 0 AAA domain IncA PF04156.9 gi|257387079|ref|YP_003176852.1| - 0.2 11.2 39.3 0.043 13.4 6.1 4.8 3 2 1 4 4 4 0 IncA protein APG17 PF04108.7 gi|257387079|ref|YP_003176852.1| - 0.27 10.0 33.4 0.25 10.1 17.5 4.0 2 1 1 3 3 3 0 Autophagy protein Apg17 DUF948 PF06103.6 gi|257387079|ref|YP_003176852.1| - 0.29 10.9 37.5 0.05 13.4 4.8 6.4 5 2 1 6 6 6 0 Bacterial protein of unknown function (DUF948) Spc7 PF08317.6 gi|257387079|ref|YP_003176852.1| - 0.82 8.2 29.5 0.16 10.6 5.0 3.9 2 1 1 4 4 4 0 Spc7 kinetochore protein Laminin_II PF06009.7 gi|257387079|ref|YP_003176852.1| - 1.1 8.9 46.2 0.12 12.1 1.1 6.1 3 2 3 6 6 6 0 Laminin Domain II Seryl_tRNA_N PF02403.17 gi|257387079|ref|YP_003176852.1| - 4.1 7.4 37.5 2.3 8.2 4.2 5.8 1 1 6 7 7 7 0 Seryl-tRNA synthetase N-terminal domain Mod_r PF07200.8 gi|257387079|ref|YP_003176852.1| - 4.2 7.2 31.7 0.34 10.8 0.9 4.7 2 2 2 4 4 4 0 Modifier of rudimentary (Mod(r)) protein DUF972 PF06156.8 gi|257387079|ref|YP_003176852.1| - 7.5 6.9 25.5 9.3 6.6 1.2 5.6 3 1 1 5 5 5 0 Protein of unknown function (DUF972) Bmp PF02608.9 gi|257387080|ref|YP_003176853.1| - 2.7e-65 220.1 0.1 3.4e-65 219.7 0.1 1.0 1 0 0 1 1 1 1 Basic membrane protein FtsJ PF01728.14 gi|257387081|ref|YP_003176854.1| - 2.6e-54 183.9 0.0 3.2e-54 183.6 0.0 1.1 1 0 0 1 1 1 1 FtsJ-like methyltransferase TRAM PF01938.15 gi|257387081|ref|YP_003176854.1| - 3.2e-16 58.8 1.6 6.9e-16 57.7 1.1 1.6 1 0 0 1 1 1 1 TRAM domain Methyltransf_31 PF13847.1 gi|257387081|ref|YP_003176854.1| - 0.00014 21.5 0.0 0.011 15.3 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain NSP13 PF06460.7 gi|257387081|ref|YP_003176854.1| - 0.00076 18.4 0.0 0.0012 17.8 0.0 1.2 1 0 0 1 1 1 1 Coronavirus NSP13 Methyltransf_23 PF13489.1 gi|257387081|ref|YP_003176854.1| - 0.0014 18.3 0.0 0.0026 17.4 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|257387081|ref|YP_003176854.1| - 0.0061 16.5 0.5 0.014 15.4 0.4 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|257387081|ref|YP_003176854.1| - 0.058 13.9 0.6 0.26 11.8 0.4 2.0 1 1 0 1 1 1 0 Methyltransferase domain DPBB_1 PF03330.13 gi|257387081|ref|YP_003176854.1| - 0.18 11.8 1.0 7.4 6.6 0.0 3.1 2 1 0 2 2 2 0 Rare lipoprotein A (RlpA)-like double-psi beta-barrel Myosin_N PF02736.14 gi|257387081|ref|YP_003176854.1| - 1.6 8.4 5.4 15 5.3 0.1 3.0 3 0 0 3 3 3 0 Myosin N-terminal SH3-like domain TRAM PF01938.15 gi|257387082|ref|YP_003176855.1| - 2.1e-09 37.0 0.3 3e-09 36.5 0.2 1.2 1 0 0 1 1 1 1 TRAM domain GP46 PF07409.7 gi|257387082|ref|YP_003176855.1| - 0.11 11.7 0.8 0.16 11.3 0.5 1.3 1 0 0 1 1 1 0 Phage protein GP46 Nucleoplasmin PF03066.10 gi|257387082|ref|YP_003176855.1| - 0.62 9.5 4.5 0.7 9.3 3.2 1.3 1 0 0 1 1 1 0 Nucleoplasmin Sigma70_ner PF04546.8 gi|257387082|ref|YP_003176855.1| - 0.94 9.0 5.0 1.1 8.8 3.4 1.1 1 0 0 1 1 1 0 Sigma-70, non-essential region Nop14 PF04147.7 gi|257387082|ref|YP_003176855.1| - 3.9 5.2 5.9 3.9 5.2 4.1 1.1 1 0 0 1 1 1 0 Nop14-like family DUF2457 PF10446.4 gi|257387082|ref|YP_003176855.1| - 9.8 4.7 11.3 12 4.4 7.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2457) adh_short_C2 PF13561.1 gi|257387084|ref|YP_003176857.1| - 8.5e-23 81.3 0.0 1e-22 81.0 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|257387084|ref|YP_003176857.1| - 2.9e-20 72.8 4.4 4.2e-20 72.3 2.9 1.5 1 1 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|257387084|ref|YP_003176857.1| - 7.6e-11 42.0 1.4 1.2e-10 41.3 1.0 1.3 1 0 0 1 1 1 1 KR domain NAD_binding_10 PF13460.1 gi|257387084|ref|YP_003176857.1| - 0.015 15.3 1.0 0.024 14.6 0.7 1.4 1 0 0 1 1 1 0 NADH(P)-binding Epimerase PF01370.16 gi|257387084|ref|YP_003176857.1| - 0.038 13.4 0.0 0.06 12.7 0.0 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family MNHE PF01899.11 gi|257387085|ref|YP_003176858.1| - 0.16 11.6 0.9 0.17 11.5 0.6 1.0 1 0 0 1 1 1 0 Na+/H+ ion antiporter subunit MitoNEET_N PF10660.4 gi|257387085|ref|YP_003176858.1| - 0.16 11.8 2.0 0.42 10.5 0.1 2.0 2 0 0 2 2 2 0 Iron-containing outer mitochondrial membrane protein N-terminus LHC PF00556.15 gi|257387085|ref|YP_003176858.1| - 0.8 9.5 5.7 0.21 11.4 0.8 2.0 2 0 0 2 2 2 0 Antenna complex alpha/beta subunit PsbJ PF01788.12 gi|257387085|ref|YP_003176858.1| - 7 6.2 8.3 1.1 8.8 2.1 2.1 2 0 0 2 2 2 0 PsbJ NTP_transferase PF00483.18 gi|257387086|ref|YP_003176859.1| - 7.1e-37 127.0 0.0 1.1e-36 126.4 0.0 1.3 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|257387086|ref|YP_003176859.1| - 2.5e-07 30.9 5.2 3.6e-06 27.1 0.1 2.7 2 1 0 2 2 2 2 MobA-like NTP transferase domain MannoseP_isomer PF01050.13 gi|257387086|ref|YP_003176859.1| - 0.053 13.1 0.1 0.09 12.3 0.1 1.3 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase DUF384 PF04064.8 gi|257387086|ref|YP_003176859.1| - 0.075 12.6 0.0 0.19 11.3 0.0 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF384) Cob_adeno_trans PF01923.13 gi|257387087|ref|YP_003176860.1| - 0.13 12.0 0.6 1.5 8.6 0.1 2.0 2 0 0 2 2 2 0 Cobalamin adenosyltransferase tRNA_anti-codon PF01336.20 gi|257387088|ref|YP_003176861.1| - 0.00037 20.3 1.1 0.0027 17.5 0.1 2.8 3 1 0 3 3 3 1 OB-fold nucleic acid binding domain Notch PF00066.12 gi|257387088|ref|YP_003176861.1| - 0.083 13.1 0.3 0.12 12.6 0.2 1.3 1 0 0 1 1 1 0 LNR domain RHH_1 PF01402.16 gi|257387090|ref|YP_003176863.1| - 0.0036 17.1 0.1 0.011 15.6 0.0 1.8 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family DUF972 PF06156.8 gi|257387090|ref|YP_003176863.1| - 0.12 12.7 1.7 0.19 12.1 1.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF972) Condensation PF00668.15 gi|257387090|ref|YP_003176863.1| - 0.19 10.5 3.6 5 5.8 0.0 2.2 2 1 0 2 2 2 0 Condensation domain DUF1488 PF07369.6 gi|257387090|ref|YP_003176863.1| - 0.24 11.2 1.8 3.4 7.5 0.0 2.9 2 1 2 4 4 4 0 Protein of unknown function (DUF1488) zf-Mss51 PF13824.1 gi|257387090|ref|YP_003176863.1| - 1.3 8.9 3.9 3.1 7.7 2.0 2.0 2 0 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 IncA PF04156.9 gi|257387090|ref|YP_003176863.1| - 5.3 6.5 7.3 6.9 6.2 5.0 1.3 1 1 0 1 1 1 0 IncA protein HNH PF01844.18 gi|257387092|ref|YP_003176865.1| - 0.00016 21.4 0.1 0.00031 20.5 0.0 1.5 2 0 0 2 2 2 1 HNH endonuclease CBS PF00571.23 gi|257387093|ref|YP_003176866.1| - 3.6e-25 87.4 10.1 3.8e-13 49.0 0.3 2.8 3 0 0 3 3 3 2 CBS domain Peptidase_M50 PF02163.17 gi|257387093|ref|YP_003176866.1| - 1.1e-22 79.9 12.3 1e-16 60.5 4.8 2.4 1 1 1 2 2 2 2 Peptidase family M50 Peptidase_M50B PF13398.1 gi|257387093|ref|YP_003176866.1| - 0.00019 20.8 5.9 0.00019 20.8 4.1 1.8 2 0 0 2 2 2 1 Peptidase M50B-like DUF4013 PF13197.1 gi|257387095|ref|YP_003176868.1| - 9.3e-37 125.9 19.7 9.3e-37 125.9 13.6 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF4013) Ycf4 PF02392.11 gi|257387095|ref|YP_003176868.1| - 0.96 8.7 3.2 0.65 9.2 0.2 2.0 2 0 0 2 2 2 0 Ycf4 DEAD PF00270.24 gi|257387096|ref|YP_003176869.1| - 1e-21 77.1 0.0 1.9e-21 76.3 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|257387096|ref|YP_003176869.1| - 1.3e-12 47.4 0.0 4e-12 45.8 0.0 1.9 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|257387096|ref|YP_003176869.1| - 1.8e-06 27.9 0.0 1.3e-05 25.0 0.0 2.1 1 1 1 2 2 2 1 Type III restriction enzyme, res subunit CitMHS PF03600.11 gi|257387097|ref|YP_003176870.1| - 1.1e-30 106.4 19.6 1.6e-30 105.9 13.6 1.3 1 0 0 1 1 1 1 Citrate transporter TrkA_C PF02080.16 gi|257387097|ref|YP_003176870.1| - 6.8e-24 83.2 5.8 4.5e-15 55.0 0.1 2.5 2 0 0 2 2 2 2 TrkA-C domain Na_sulph_symp PF00939.14 gi|257387097|ref|YP_003176870.1| - 4.1e-20 72.0 34.1 2.8e-13 49.5 9.8 3.4 2 2 1 3 3 3 3 Sodium:sulfate symporter transmembrane region BROMI PF14961.1 gi|257387097|ref|YP_003176870.1| - 0.3 8.1 0.0 0.42 7.6 0.0 1.1 1 0 0 1 1 1 0 Broad-minded protein DUF217 PF02697.9 gi|257387098|ref|YP_003176871.1| - 2.2e-07 31.0 0.6 2.5e-07 30.8 0.4 1.1 1 0 0 1 1 1 1 Uncharacterized ACR, COG1753 Cupin_4 PF08007.7 gi|257387098|ref|YP_003176871.1| - 0.0051 16.0 0.3 0.0051 16.0 0.2 1.0 1 0 0 1 1 1 1 Cupin superfamily protein Tmemb_cc2 PF10267.4 gi|257387098|ref|YP_003176871.1| - 0.017 13.7 1.0 0.017 13.7 0.7 1.0 1 0 0 1 1 1 0 Predicted transmembrane and coiled-coil 2 protein Snapin_Pallidin PF14712.1 gi|257387098|ref|YP_003176871.1| - 0.026 14.8 0.2 0.03 14.6 0.1 1.1 1 0 0 1 1 1 0 Snapin/Pallidin THOC7 PF05615.8 gi|257387098|ref|YP_003176871.1| - 0.048 13.9 0.6 0.062 13.5 0.5 1.3 1 0 0 1 1 1 0 Tho complex subunit 7 CorA PF01544.13 gi|257387098|ref|YP_003176871.1| - 0.16 10.9 1.1 0.2 10.6 0.8 1.3 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein RHH_1 PF01402.16 gi|257387098|ref|YP_003176871.1| - 0.21 11.5 6.3 0.23 11.3 1.4 2.8 2 1 0 2 2 2 0 Ribbon-helix-helix protein, copG family DUF2951 PF11166.3 gi|257387098|ref|YP_003176871.1| - 0.27 11.0 2.8 0.42 10.5 2.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2951) Sigma70_r1_1 PF03979.9 gi|257387098|ref|YP_003176871.1| - 0.31 11.0 2.1 0.66 9.9 0.4 1.8 1 1 1 2 2 2 0 Sigma-70 factor, region 1.1 DUF4164 PF13747.1 gi|257387098|ref|YP_003176871.1| - 1.2 9.3 7.4 6.3 7.0 2.3 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4164) PIN PF01850.16 gi|257387099|ref|YP_003176872.1| - 4.6e-06 26.9 0.1 6.1e-06 26.5 0.1 1.1 1 0 0 1 1 1 1 PIN domain DUF2263 PF10021.4 gi|257387099|ref|YP_003176872.1| - 0.0056 16.6 0.0 0.0074 16.2 0.0 1.3 1 1 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2263) Lipoprotein_6 PF01441.14 gi|257387100|ref|YP_003176873.1| - 0.025 14.4 0.1 0.046 13.5 0.1 1.4 1 0 0 1 1 1 0 Lipoprotein DsbD_2 PF13386.1 gi|257387100|ref|YP_003176873.1| - 0.025 14.3 1.7 0.04 13.6 1.2 1.2 1 0 0 1 1 1 0 Cytochrome C biogenesis protein transmembrane region IncA PF04156.9 gi|257387100|ref|YP_003176873.1| - 0.39 10.2 10.2 0.26 10.8 1.1 2.6 2 1 0 2 2 2 0 IncA protein MCM PF00493.18 gi|257387101|ref|YP_003176874.1| - 5.3e-118 393.5 0.2 5.9e-96 321.1 0.1 2.2 2 0 0 2 2 2 2 MCM2/3/5 family MCM_N PF14551.1 gi|257387101|ref|YP_003176874.1| - 3.8e-16 59.6 0.0 1.4e-15 57.8 0.0 2.0 1 0 0 1 1 1 1 MCM N-terminal domain Intein_splicing PF14890.1 gi|257387101|ref|YP_003176874.1| - 7.2e-09 34.9 0.0 0.0014 17.5 0.1 2.9 2 1 0 2 2 2 2 Intein splicing domain Mg_chelatase PF01078.16 gi|257387101|ref|YP_003176874.1| - 9.6e-08 31.4 0.1 2.9e-05 23.3 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Hint PF01079.15 gi|257387101|ref|YP_003176874.1| - 0.00013 21.2 0.0 0.0027 16.9 0.0 2.4 2 0 0 2 2 2 1 Hint module AAA_5 PF07728.9 gi|257387101|ref|YP_003176874.1| - 0.0033 17.1 0.1 0.55 9.9 0.0 2.5 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.21 gi|257387101|ref|YP_003176874.1| - 0.045 13.2 0.1 1.3 8.4 0.0 2.3 2 0 0 2 2 2 0 Sigma-54 interaction domain DUF2580 PF10824.3 gi|257387104|ref|YP_003176877.1| - 0.64 10.4 2.8 2.5 8.5 1.9 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF2580) FUSC PF04632.7 gi|257387105|ref|YP_003176878.1| - 0.02 13.3 13.1 0.025 13.0 9.1 1.2 1 0 0 1 1 1 0 Fusaric acid resistance protein family PspB PF06667.7 gi|257387106|ref|YP_003176879.1| - 0.11 12.3 0.1 3.3 7.7 0.0 2.2 2 0 0 2 2 2 0 Phage shock protein B CbiA PF01656.18 gi|257387107|ref|YP_003176880.1| - 4e-18 65.5 0.2 5.1e-18 65.1 0.1 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4_NifH PF00142.13 gi|257387107|ref|YP_003176880.1| - 4.7e-07 29.2 0.0 0.0023 17.1 0.0 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_31 PF13614.1 gi|257387107|ref|YP_003176880.1| - 0.00015 21.7 0.0 0.00061 19.7 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|257387107|ref|YP_003176880.1| - 0.00066 20.4 0.2 0.0013 19.5 0.2 1.7 1 1 0 1 1 1 1 AAA domain ParA PF10609.4 gi|257387107|ref|YP_003176880.1| - 0.0018 18.1 0.0 0.0046 16.8 0.0 1.6 1 0 0 1 1 1 1 ParA/MinD ATPase like AAA_33 PF13671.1 gi|257387107|ref|YP_003176880.1| - 0.0018 18.1 0.0 0.0045 16.8 0.0 1.9 1 1 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.10 gi|257387107|ref|YP_003176880.1| - 0.013 14.5 0.5 0.019 13.9 0.3 1.2 1 0 0 1 1 1 0 Anion-transporting ATPase AAA_25 PF13481.1 gi|257387107|ref|YP_003176880.1| - 0.015 14.7 0.1 0.058 12.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain YhjQ PF06564.7 gi|257387107|ref|YP_003176880.1| - 0.078 12.3 0.4 15 4.8 0.1 2.9 3 0 0 3 3 3 0 YhjQ protein AAA_18 PF13238.1 gi|257387107|ref|YP_003176880.1| - 0.18 12.0 0.0 0.53 10.5 0.0 1.7 2 0 0 2 2 2 0 AAA domain X PF00739.14 gi|257387107|ref|YP_003176880.1| - 1.7 8.5 8.3 5.5 6.8 1.8 2.3 1 1 0 2 2 2 0 Trans-activation protein X TFIIB PF00382.14 gi|257387108|ref|YP_003176881.1| - 1.9e-33 114.0 3.5 1.4e-16 60.0 0.1 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|257387108|ref|YP_003176881.1| - 2.4e-11 42.7 0.5 4.1e-11 42.0 0.3 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.6 gi|257387108|ref|YP_003176881.1| - 0.0016 18.0 0.5 0.0041 16.7 0.3 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain RB_B PF01857.15 gi|257387108|ref|YP_003176881.1| - 0.0033 16.9 0.0 0.0054 16.2 0.0 1.2 1 0 0 1 1 1 1 Retinoblastoma-associated protein B domain DZR PF12773.2 gi|257387108|ref|YP_003176881.1| - 0.015 15.0 1.0 0.03 14.1 0.7 1.5 1 0 0 1 1 1 0 Double zinc ribbon DUF35_N PF12172.3 gi|257387108|ref|YP_003176881.1| - 0.032 14.1 1.4 0.1 12.5 1.0 1.9 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc-ribbons_6 PF07191.7 gi|257387108|ref|YP_003176881.1| - 0.034 13.9 0.8 0.06 13.1 0.6 1.4 1 0 0 1 1 1 0 zinc-ribbons FYVE PF01363.16 gi|257387108|ref|YP_003176881.1| - 0.071 13.0 0.2 0.12 12.3 0.2 1.5 1 0 0 1 1 1 0 FYVE zinc finger DUF3789 PF12664.2 gi|257387108|ref|YP_003176881.1| - 0.16 11.3 0.0 0.27 10.5 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3789) Rubredoxin PF00301.15 gi|257387108|ref|YP_003176881.1| - 0.29 11.0 1.8 1.9 8.3 0.1 2.3 2 0 0 2 2 2 0 Rubredoxin AAA_31 PF13614.1 gi|257387110|ref|YP_003176883.1| - 3.8e-08 33.4 0.0 9.4e-08 32.1 0.0 1.6 1 1 0 1 1 1 1 AAA domain CbiA PF01656.18 gi|257387110|ref|YP_003176883.1| - 1.1e-06 28.1 0.0 1.5e-06 27.7 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain YhjQ PF06564.7 gi|257387110|ref|YP_003176883.1| - 4.8e-06 26.1 0.2 1.2e-05 24.8 0.1 1.6 1 1 0 1 1 1 1 YhjQ protein MipZ PF09140.6 gi|257387110|ref|YP_003176883.1| - 0.0011 18.1 0.3 0.092 11.8 0.1 2.1 2 0 0 2 2 2 2 ATPase MipZ Gmad1 PF10647.4 gi|257387110|ref|YP_003176883.1| - 0.17 11.2 10.0 0.25 10.7 0.7 2.1 1 1 1 2 2 2 0 Lipoprotein LpqB beta-propeller domain HIT PF01230.18 gi|257387111|ref|YP_003176884.1| - 1e-24 86.9 0.1 1.2e-24 86.7 0.0 1.1 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.3 gi|257387111|ref|YP_003176884.1| - 4.4e-16 59.1 0.0 5.5e-16 58.8 0.0 1.1 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.10 gi|257387111|ref|YP_003176884.1| - 0.0054 16.3 0.0 0.0097 15.5 0.0 1.5 1 0 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 UPF0047 PF01894.12 gi|257387112|ref|YP_003176885.1| - 4.6e-33 113.5 0.0 5.2e-33 113.3 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 Gal4_dimer PF03902.8 gi|257387112|ref|YP_003176885.1| - 0.0032 17.3 0.0 0.0053 16.6 0.0 1.3 1 0 0 1 1 1 1 Gal4-like dimerisation domain HTH_20 PF12840.2 gi|257387114|ref|YP_003176887.1| - 9.6e-07 28.5 0.4 1.4e-06 27.9 0.2 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|257387114|ref|YP_003176887.1| - 0.00021 20.6 0.0 0.00039 19.7 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|257387114|ref|YP_003176887.1| - 0.00073 19.1 0.2 0.0016 18.0 0.1 1.5 2 0 0 2 2 2 1 MarR family HTH_11 PF08279.7 gi|257387114|ref|YP_003176887.1| - 0.0016 18.0 0.0 0.0026 17.3 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_AsnC-type PF13404.1 gi|257387114|ref|YP_003176887.1| - 0.004 16.6 0.0 0.011 15.2 0.0 1.7 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_IclR PF09339.5 gi|257387114|ref|YP_003176887.1| - 0.012 15.1 0.0 0.019 14.5 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain TrmB PF01978.14 gi|257387114|ref|YP_003176887.1| - 0.08 12.6 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB ATP-synt_C PF00137.16 gi|257387115|ref|YP_003176888.1| - 0.0046 16.8 3.7 0.0074 16.1 2.6 1.4 1 0 0 1 1 1 1 ATP synthase subunit C DUF3681 PF12442.3 gi|257387115|ref|YP_003176888.1| - 0.096 12.8 3.3 0.1 12.7 1.5 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF3681) tRNA-synt_1 PF00133.17 gi|257387116|ref|YP_003176889.1| - 2.4e-175 583.9 0.0 3.2e-175 583.5 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|257387116|ref|YP_003176889.1| - 1.6e-31 109.1 0.1 3e-31 108.2 0.0 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|257387116|ref|YP_003176889.1| - 8.9e-29 100.3 0.1 8.2e-11 41.1 0.0 3.9 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.1 gi|257387116|ref|YP_003176889.1| - 0.0084 15.4 0.0 0.055 12.7 0.0 2.1 1 1 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.14 gi|257387116|ref|YP_003176889.1| - 0.031 13.3 0.0 8.3 5.4 0.0 2.6 3 0 0 3 3 3 0 tRNA synthetases class I (C) catalytic domain DUF4177 PF13783.1 gi|257387117|ref|YP_003176890.1| - 1e-05 25.0 0.0 1.4e-05 24.6 0.0 1.3 1 1 0 1 1 1 1 Domain of unknown function (DUF4177) Bac_rhodopsin PF01036.13 gi|257387118|ref|YP_003176891.1| - 1.2e-51 175.1 22.3 1.4e-51 174.9 15.5 1.0 1 0 0 1 1 1 1 Bacteriorhodopsin-like protein Peptidase_A24 PF01478.13 gi|257387119|ref|YP_003176892.1| - 0.31 11.2 2.3 0.31 11.2 1.6 1.1 1 0 0 1 1 1 0 Type IV leader peptidase family DHHA1 PF02272.14 gi|257387120|ref|YP_003176893.1| - 6.8e-15 54.5 1.6 1.5e-14 53.4 1.1 1.5 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.15 gi|257387120|ref|YP_003176893.1| - 1.2e-11 44.3 0.0 2e-11 43.7 0.0 1.3 1 0 0 1 1 1 1 DHH family UPF0197 PF05251.7 gi|257387121|ref|YP_003176894.1| - 0.032 14.5 2.1 0.45 10.8 1.5 1.9 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0197) DUF318 PF03773.8 gi|257387121|ref|YP_003176894.1| - 0.082 11.8 0.4 0.095 11.6 0.3 1.1 1 0 0 1 1 1 0 Predicted permease Papilloma_E5 PF03025.9 gi|257387121|ref|YP_003176894.1| - 0.36 10.8 4.2 0.69 9.8 2.9 1.5 1 1 0 1 1 1 0 Papillomavirus E5 Lip_A_acyltrans PF03279.8 gi|257387122|ref|YP_003176895.1| - 0.12 11.1 0.0 0.16 10.8 0.0 1.1 1 0 0 1 1 1 0 Bacterial lipid A biosynthesis acyltransferase KaiC PF06745.8 gi|257387123|ref|YP_003176896.1| - 2e-42 144.8 0.0 2.2e-42 144.7 0.0 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|257387123|ref|YP_003176896.1| - 2.7e-09 36.7 0.0 4.7e-09 35.9 0.0 1.4 1 1 0 1 1 1 1 AAA domain GvpD PF07088.6 gi|257387123|ref|YP_003176896.1| - 3.5e-09 35.5 0.0 6.7e-09 34.5 0.0 1.4 1 1 0 1 1 1 1 GvpD gas vesicle protein AAA_19 PF13245.1 gi|257387123|ref|YP_003176896.1| - 1.3e-06 28.0 0.0 2.6e-06 27.0 0.0 1.4 1 0 0 1 1 1 1 Part of AAA domain Arch_ATPase PF01637.13 gi|257387123|ref|YP_003176896.1| - 8.7e-05 22.3 0.0 0.00013 21.7 0.0 1.3 1 0 0 1 1 1 1 Archaeal ATPase IstB_IS21 PF01695.12 gi|257387123|ref|YP_003176896.1| - 9.2e-05 21.9 0.0 0.00019 20.9 0.0 1.4 1 1 0 1 1 1 1 IstB-like ATP binding protein AAA_14 PF13173.1 gi|257387123|ref|YP_003176896.1| - 0.00014 21.7 0.0 0.00035 20.4 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|257387123|ref|YP_003176896.1| - 0.00022 20.7 0.0 0.00026 20.5 0.0 1.2 1 1 0 1 1 1 1 AAA-like domain AAA_33 PF13671.1 gi|257387123|ref|YP_003176896.1| - 0.00044 20.1 0.1 0.00072 19.4 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|257387123|ref|YP_003176896.1| - 0.00068 19.7 0.2 0.0022 18.1 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|257387123|ref|YP_003176896.1| - 0.00069 19.6 0.0 0.0013 18.7 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|257387123|ref|YP_003176896.1| - 0.00081 20.2 0.0 0.0013 19.5 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|257387123|ref|YP_003176896.1| - 0.00089 19.2 0.0 0.0015 18.5 0.0 1.3 1 1 0 1 1 1 1 AAA ATPase domain RecA PF00154.16 gi|257387123|ref|YP_003176896.1| - 0.0027 16.8 0.1 0.0051 15.9 0.0 1.5 2 0 0 2 2 1 1 recA bacterial DNA recombination protein DnaB_C PF03796.10 gi|257387123|ref|YP_003176896.1| - 0.0035 16.2 0.0 0.0068 15.3 0.0 1.5 2 0 0 2 2 2 1 DnaB-like helicase C terminal domain NACHT PF05729.7 gi|257387123|ref|YP_003176896.1| - 0.0038 16.8 0.1 0.0097 15.5 0.0 1.7 2 1 0 2 2 2 1 NACHT domain AAA PF00004.24 gi|257387123|ref|YP_003176896.1| - 0.0047 17.1 1.0 0.24 11.6 0.7 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.1 gi|257387123|ref|YP_003176896.1| - 0.011 15.9 0.1 0.029 14.6 0.0 1.8 1 1 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|257387123|ref|YP_003176896.1| - 0.014 14.3 0.0 0.025 13.5 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein KTI12 PF08433.5 gi|257387123|ref|YP_003176896.1| - 0.014 14.6 0.0 0.023 13.9 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 CobU PF02283.11 gi|257387123|ref|YP_003176896.1| - 0.015 14.7 0.1 2.7 7.3 0.0 2.2 2 0 0 2 2 2 0 Cobinamide kinase / cobinamide phosphate guanyltransferase Zeta_toxin PF06414.7 gi|257387123|ref|YP_003176896.1| - 0.018 14.1 0.0 0.031 13.3 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_11 PF13086.1 gi|257387123|ref|YP_003176896.1| - 0.023 14.2 0.0 0.025 14.1 0.0 1.2 1 0 0 1 1 1 0 AAA domain Guanylate_kin PF00625.16 gi|257387123|ref|YP_003176896.1| - 0.029 13.8 0.0 0.041 13.3 0.0 1.3 1 0 0 1 1 1 0 Guanylate kinase AAA_23 PF13476.1 gi|257387123|ref|YP_003176896.1| - 0.035 14.4 0.0 0.071 13.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|257387123|ref|YP_003176896.1| - 0.038 13.9 0.0 0.12 12.3 0.0 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_31 PF13614.1 gi|257387123|ref|YP_003176896.1| - 0.048 13.5 0.0 0.099 12.5 0.0 1.8 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|257387123|ref|YP_003176896.1| - 0.049 13.7 0.0 0.091 12.9 0.0 1.4 1 0 0 1 1 1 0 RNA helicase Zot PF05707.7 gi|257387123|ref|YP_003176896.1| - 0.053 12.9 0.0 0.073 12.5 0.0 1.2 1 0 0 1 1 1 0 Zonular occludens toxin (Zot) cobW PF02492.14 gi|257387123|ref|YP_003176896.1| - 0.054 12.9 0.0 0.11 11.9 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain ATP_bind_1 PF03029.12 gi|257387123|ref|YP_003176896.1| - 0.06 12.8 0.0 0.13 11.7 0.0 1.6 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_35 PF14516.1 gi|257387123|ref|YP_003176896.1| - 0.06 11.9 0.0 0.22 10.0 0.0 1.7 1 1 1 2 2 2 0 AAA-like domain AAA_30 PF13604.1 gi|257387123|ref|YP_003176896.1| - 0.089 12.3 0.0 0.12 11.9 0.0 1.4 1 1 0 1 1 1 0 AAA domain Miro PF08477.8 gi|257387123|ref|YP_003176896.1| - 0.098 13.1 0.4 1.1 9.7 0.3 2.2 1 1 0 1 1 1 0 Miro-like protein MobB PF03205.9 gi|257387123|ref|YP_003176896.1| - 0.11 12.2 0.0 0.21 11.2 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B NTPase_1 PF03266.10 gi|257387123|ref|YP_003176896.1| - 0.11 12.2 0.0 0.22 11.2 0.0 1.5 1 0 0 1 1 1 0 NTPase CbiA PF01656.18 gi|257387123|ref|YP_003176896.1| - 0.12 11.7 0.2 0.51 9.7 0.1 1.9 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_24 PF13479.1 gi|257387123|ref|YP_003176896.1| - 0.13 11.8 0.1 0.46 10.0 0.0 1.8 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|257387123|ref|YP_003176896.1| - 0.14 12.4 0.0 0.2 11.9 0.0 1.5 1 1 0 1 1 1 0 ABC transporter zf-ribbon_3 PF13248.1 gi|257387124|ref|YP_003176897.1| - 0.00034 19.7 2.3 0.00055 19.0 1.6 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|257387124|ref|YP_003176897.1| - 0.0013 18.4 1.5 0.002 17.8 1.1 1.4 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|257387124|ref|YP_003176897.1| - 0.0023 17.3 4.2 0.0067 15.8 2.9 1.7 1 1 0 1 1 1 1 zinc-ribbon domain Prok-RING_1 PF14446.1 gi|257387124|ref|YP_003176897.1| - 0.004 16.8 0.3 0.0053 16.4 0.2 1.1 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 HypA PF01155.14 gi|257387124|ref|YP_003176897.1| - 0.015 14.9 0.1 0.015 14.9 0.0 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DNA_RNApol_7kD PF03604.8 gi|257387124|ref|YP_003176897.1| - 0.038 13.4 4.7 0.13 11.7 3.3 1.8 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit TF_Zn_Ribbon PF08271.7 gi|257387124|ref|YP_003176897.1| - 0.12 11.7 0.8 0.16 11.3 0.6 1.2 1 0 0 1 1 1 0 TFIIB zinc-binding Nudix_N_2 PF14803.1 gi|257387124|ref|YP_003176897.1| - 0.13 11.9 3.3 0.83 9.3 0.1 2.3 2 0 0 2 2 2 0 Nudix N-terminal OrfB_Zn_ribbon PF07282.6 gi|257387124|ref|YP_003176897.1| - 0.15 11.7 1.8 0.2 11.3 1.2 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-B_box PF00643.19 gi|257387124|ref|YP_003176897.1| - 0.26 11.2 1.5 0.36 10.7 1.1 1.2 1 0 0 1 1 1 0 B-box zinc finger RNA_POL_M_15KD PF02150.11 gi|257387124|ref|YP_003176897.1| - 1.6 8.4 5.4 7.7 6.2 0.2 2.1 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit DUF35_N PF12172.3 gi|257387124|ref|YP_003176897.1| - 4 7.4 9.1 73 3.4 6.3 2.2 1 1 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Hexapep PF00132.19 gi|257387125|ref|YP_003176898.1| - 7.9e-09 34.6 0.5 0.009 15.4 0.0 3.8 4 0 0 4 4 4 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|257387125|ref|YP_003176898.1| - 0.00034 20.0 2.5 0.11 12.1 0.0 3.6 3 1 1 4 4 4 3 Hexapeptide repeat of succinyl-transferase Abi PF02517.11 gi|257387126|ref|YP_003176899.1| - 1.6e-16 60.1 2.9 1.6e-16 60.1 2.0 2.7 3 0 0 3 3 3 1 CAAX protease self-immunity Aldo_ket_red PF00248.16 gi|257387127|ref|YP_003176900.1| - 1.4e-49 168.4 0.0 1.6e-49 168.2 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family Lactamase_B_2 PF12706.2 gi|257387128|ref|YP_003176901.1| - 8.8e-33 113.4 0.1 1.3e-32 112.9 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|257387128|ref|YP_003176901.1| - 2.7e-15 56.5 5.1 1.4e-13 50.9 3.5 2.4 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.1 gi|257387128|ref|YP_003176901.1| - 0.0013 18.1 0.0 0.0026 17.2 0.0 1.4 1 0 0 1 1 1 1 tRNase Z endonuclease RmlD_sub_bind PF04321.12 gi|257387128|ref|YP_003176901.1| - 0.062 12.1 0.1 0.093 11.6 0.0 1.2 1 0 0 1 1 1 0 RmlD substrate binding domain UPF0180 PF03698.8 gi|257387128|ref|YP_003176901.1| - 0.12 12.2 0.2 0.69 9.7 0.0 2.0 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0180) NAD_binding_10 PF13460.1 gi|257387129|ref|YP_003176902.1| - 1e-27 97.3 0.1 1.4e-27 96.9 0.1 1.1 1 0 0 1 1 1 1 NADH(P)-binding NmrA PF05368.8 gi|257387129|ref|YP_003176902.1| - 9.3e-17 61.0 0.0 1.7e-16 60.1 0.0 1.3 1 1 0 1 1 1 1 NmrA-like family Epimerase PF01370.16 gi|257387129|ref|YP_003176902.1| - 2.9e-12 46.5 0.2 1.8e-11 43.9 0.0 2.2 2 1 0 2 2 2 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|257387129|ref|YP_003176902.1| - 1.7e-07 30.2 0.0 5.4e-07 28.6 0.0 1.7 2 0 0 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|257387129|ref|YP_003176902.1| - 1.7e-05 23.8 0.0 0.011 14.6 0.0 2.2 2 0 0 2 2 2 2 RmlD substrate binding domain NAD_binding_4 PF07993.7 gi|257387129|ref|YP_003176902.1| - 0.00014 20.9 0.0 0.00032 19.6 0.0 1.6 2 0 0 2 2 2 1 Male sterility protein adh_short PF00106.20 gi|257387129|ref|YP_003176902.1| - 0.097 12.5 1.8 0.48 10.3 1.1 2.3 1 1 0 1 1 1 0 short chain dehydrogenase Glyco_trans_4_4 PF13579.1 gi|257387129|ref|YP_003176902.1| - 0.13 12.3 2.1 1 9.4 1.5 2.2 1 1 0 1 1 1 0 Glycosyl transferase 4-like domain Cwf_Cwc_15 PF04889.7 gi|257387131|ref|YP_003176904.1| - 0.65 9.6 7.6 0.72 9.5 5.3 1.0 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein Glyoxalase_2 PF12681.2 gi|257387132|ref|YP_003176905.1| - 0.016 15.8 0.3 0.058 14.0 0.0 2.1 2 0 0 2 2 2 0 Glyoxalase-like domain UvrC_HhH_N PF08459.6 gi|257387133|ref|YP_003176906.1| - 2.5e-41 140.7 0.0 4.6e-41 139.9 0.0 1.5 1 0 0 1 1 1 1 UvrC Helix-hairpin-helix N-terminal HHH PF00633.18 gi|257387133|ref|YP_003176906.1| - 1.2e-10 40.4 0.4 6.7e-07 28.6 0.1 2.7 2 0 0 2 2 2 2 Helix-hairpin-helix motif HHH_2 PF12826.2 gi|257387133|ref|YP_003176906.1| - 1.4e-10 40.9 0.1 1.5e-09 37.6 0.0 2.3 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|257387133|ref|YP_003176906.1| - 2.8e-10 40.2 0.1 1.1e-09 38.3 0.0 2.0 1 0 0 1 1 1 1 Helix-hairpin-helix domain GIY-YIG PF01541.19 gi|257387133|ref|YP_003176906.1| - 1.1e-07 32.0 0.0 2.1e-07 31.1 0.0 1.4 1 0 0 1 1 1 1 GIY-YIG catalytic domain UVR PF02151.14 gi|257387133|ref|YP_003176906.1| - 1.3e-07 30.8 5.1 2.4e-07 30.0 1.4 2.4 2 0 0 2 2 2 1 UvrB/uvrC motif 5_3_exonuc PF01367.15 gi|257387133|ref|YP_003176906.1| - 0.0037 17.4 0.0 0.023 14.8 0.0 2.3 2 1 0 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold DAGK_cat PF00781.19 gi|257387133|ref|YP_003176906.1| - 0.073 12.5 0.0 0.2 11.0 0.0 1.7 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain Hairy_orange PF07527.8 gi|257387133|ref|YP_003176906.1| - 0.086 12.5 0.0 0.77 9.5 0.0 2.3 2 0 0 2 2 2 0 Hairy Orange AA_permease_2 PF13520.1 gi|257387134|ref|YP_003176907.1| - 7.3e-45 153.2 43.1 9.1e-45 152.9 29.9 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|257387134|ref|YP_003176907.1| - 1.1e-44 152.5 44.3 1.4e-44 152.2 30.7 1.1 1 0 0 1 1 1 1 Amino acid permease Spore_permease PF03845.8 gi|257387134|ref|YP_003176907.1| - 0.00073 18.2 12.4 0.00073 18.2 8.6 2.2 2 1 0 2 2 2 1 Spore germination protein AA_permease_C PF13906.1 gi|257387134|ref|YP_003176907.1| - 0.01 15.6 2.5 0.01 15.6 1.8 3.1 3 0 0 3 3 3 0 C-terminus of AA_permease Usp PF00582.21 gi|257387135|ref|YP_003176908.1| - 2.9e-10 40.5 4.2 8.9e-09 35.6 1.1 2.1 2 0 0 2 2 2 2 Universal stress protein family DUF3847 PF12958.2 gi|257387138|ref|YP_003176911.1| - 0.015 15.0 0.3 0.074 12.8 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3847) Antibiotic_NAT PF02522.9 gi|257387138|ref|YP_003176911.1| - 0.07 12.3 0.4 0.15 11.3 0.0 1.6 2 0 0 2 2 2 0 Aminoglycoside 3-N-acetyltransferase Thioredoxin_6 PF13848.1 gi|257387138|ref|YP_003176911.1| - 0.083 12.6 0.1 0.11 12.2 0.1 1.2 1 0 0 1 1 1 0 Thioredoxin-like domain HSP20 PF00011.16 gi|257387141|ref|YP_003176914.1| - 2.6e-14 52.9 0.0 4e-14 52.3 0.0 1.2 1 0 0 1 1 1 1 Hsp20/alpha crystallin family HC2 PF07382.6 gi|257387142|ref|YP_003176915.1| - 8.3e-10 38.8 30.6 1.7e-08 34.5 11.3 1.9 1 1 1 2 2 2 2 Histone H1-like nucleoprotein HC2 ABC_tran PF00005.22 gi|257387143|ref|YP_003176916.1| - 8.7e-28 97.3 0.0 1.4e-27 96.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|257387143|ref|YP_003176916.1| - 2.3e-10 40.9 0.0 1.2e-06 28.7 0.0 2.1 1 1 1 2 2 2 2 AAA domain DUF4162 PF13732.1 gi|257387143|ref|YP_003176916.1| - 0.00024 21.5 0.0 0.00045 20.6 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) SMC_N PF02463.14 gi|257387143|ref|YP_003176916.1| - 0.0012 18.1 0.0 0.18 11.0 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain MMR_HSR1 PF01926.18 gi|257387143|ref|YP_003176916.1| - 0.0016 18.4 0.0 0.044 13.7 0.0 2.5 1 1 2 3 3 3 1 50S ribosome-binding GTPase AAA_23 PF13476.1 gi|257387143|ref|YP_003176916.1| - 0.021 15.1 0.1 0.035 14.4 0.1 1.3 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|257387143|ref|YP_003176916.1| - 0.024 14.1 0.0 0.045 13.2 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF258 PF03193.11 gi|257387143|ref|YP_003176916.1| - 0.045 12.9 0.0 0.074 12.2 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_25 PF13481.1 gi|257387143|ref|YP_003176916.1| - 0.056 12.8 0.0 0.17 11.3 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|257387143|ref|YP_003176916.1| - 0.11 11.8 0.0 1.9 7.8 0.0 2.2 2 0 0 2 2 2 0 AAA-like domain ABC2_membrane_2 PF12679.2 gi|257387144|ref|YP_003176917.1| - 4.6e-30 104.4 18.0 7.2e-30 103.7 12.5 1.3 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|257387144|ref|YP_003176917.1| - 1.8e-12 46.9 21.3 1.8e-12 46.9 14.8 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|257387144|ref|YP_003176917.1| - 5.2e-06 25.7 19.2 5.2e-06 25.7 13.3 1.8 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|257387144|ref|YP_003176917.1| - 0.0037 16.5 12.9 0.0037 16.5 9.0 1.9 2 1 0 2 2 2 1 ABC-2 family transporter protein DNA_ligase_aden PF01653.13 gi|257387145|ref|YP_003176918.1| - 2.4e-104 348.6 0.0 3e-104 348.3 0.0 1.1 1 0 0 1 1 1 1 NAD-dependent DNA ligase adenylation domain DNA_ligase_OB PF03120.11 gi|257387145|ref|YP_003176918.1| - 7e-29 99.3 1.6 1.3e-28 98.4 1.1 1.4 1 0 0 1 1 1 1 NAD-dependent DNA ligase OB-fold domain HHH_5 PF14520.1 gi|257387145|ref|YP_003176918.1| - 6e-21 74.3 5.9 6.1e-13 48.7 0.4 4.1 4 0 0 4 4 4 2 Helix-hairpin-helix domain HHH_2 PF12826.2 gi|257387145|ref|YP_003176918.1| - 2.8e-19 68.7 1.1 4.5e-16 58.4 0.1 2.9 2 0 0 2 2 2 2 Helix-hairpin-helix motif BRCT PF00533.21 gi|257387145|ref|YP_003176918.1| - 2.1e-11 43.8 0.0 3.5e-11 43.0 0.0 1.4 1 0 0 1 1 1 1 BRCA1 C Terminus (BRCT) domain HHH PF00633.18 gi|257387145|ref|YP_003176918.1| - 5e-07 29.0 0.3 0.97 9.2 0.0 4.5 5 0 0 5 5 5 3 Helix-hairpin-helix motif DNA_ligase_ZBD PF03119.11 gi|257387145|ref|YP_003176918.1| - 4.3e-06 26.3 3.9 1.1e-05 25.0 2.7 1.7 1 0 0 1 1 1 1 NAD-dependent DNA ligase C4 zinc finger domain 5_3_exonuc PF01367.15 gi|257387145|ref|YP_003176918.1| - 0.15 12.3 0.0 2.6 8.3 0.0 2.5 2 0 0 2 2 2 0 5'-3' exonuclease, C-terminal SAM fold Bac_rhodopsin PF01036.13 gi|257387147|ref|YP_003176920.1| - 3.6e-43 147.4 26.8 4e-43 147.2 18.6 1.0 1 0 0 1 1 1 1 Bacteriorhodopsin-like protein TauE PF01925.14 gi|257387147|ref|YP_003176920.1| - 4.6 6.6 32.0 2.2 7.6 6.0 2.1 1 1 1 2 2 2 0 Sulfite exporter TauE/SafE MCPsignal PF00015.16 gi|257387148|ref|YP_003176921.1| - 3.5e-42 144.3 23.3 3.5e-42 144.3 16.2 4.0 1 1 3 4 4 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.20 gi|257387148|ref|YP_003176921.1| - 4.3e-15 55.6 1.2 4.3e-15 55.6 0.8 6.2 6 1 0 6 6 5 2 HAMP domain DUF948 PF06103.6 gi|257387148|ref|YP_003176921.1| - 2e-09 37.1 19.7 0.00068 19.4 0.5 5.2 4 1 1 5 5 4 3 Bacterial protein of unknown function (DUF948) Laminin_II PF06009.7 gi|257387148|ref|YP_003176921.1| - 5.2e-07 29.5 27.4 0.0065 16.2 0.1 5.0 4 1 1 5 5 5 3 Laminin Domain II TPR_MLP1_2 PF07926.7 gi|257387148|ref|YP_003176921.1| - 0.0025 17.5 20.7 0.24 11.1 0.1 4.2 3 2 0 3 3 3 2 TPR/MLP1/MLP2-like protein APG17 PF04108.7 gi|257387148|ref|YP_003176921.1| - 0.0031 16.3 12.0 0.018 13.8 2.7 3.3 1 1 0 2 2 2 1 Autophagy protein Apg17 AAA_13 PF13166.1 gi|257387148|ref|YP_003176921.1| - 0.0059 15.1 13.1 0.26 9.7 3.6 2.4 1 1 2 3 3 3 3 AAA domain CENP-F_leu_zip PF10473.4 gi|257387148|ref|YP_003176921.1| - 0.0077 16.0 20.2 0.32 10.8 0.6 3.6 3 1 0 3 3 3 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Prominin PF05478.6 gi|257387148|ref|YP_003176921.1| - 0.0086 13.6 8.6 0.15 9.5 0.7 2.6 2 2 0 2 2 2 2 Prominin WXG100 PF06013.7 gi|257387148|ref|YP_003176921.1| - 0.011 15.7 32.5 0.27 11.2 2.8 6.6 2 2 3 6 6 6 0 Proteins of 100 residues with WXG COG2 PF06148.6 gi|257387148|ref|YP_003176921.1| - 0.012 15.5 16.9 2.8 7.8 0.0 5.6 3 2 3 6 6 6 0 COG (conserved oligomeric Golgi) complex component, COG2 Bacillus_HBL PF05791.6 gi|257387148|ref|YP_003176921.1| - 0.014 14.7 0.1 0.014 14.7 0.1 2.4 4 1 0 4 4 2 0 Bacillus haemolytic enterotoxin (HBL) DivIVA PF05103.8 gi|257387148|ref|YP_003176921.1| - 0.017 15.1 27.8 0.14 12.2 2.1 4.6 2 2 2 5 5 5 0 DivIVA protein Syntaxin PF00804.20 gi|257387148|ref|YP_003176921.1| - 0.025 14.7 17.3 2 8.6 1.2 4.8 4 2 0 4 4 4 0 Syntaxin DASH_Duo1 PF08651.5 gi|257387148|ref|YP_003176921.1| - 0.05 13.1 5.5 14 5.3 0.0 5.3 4 2 2 6 6 6 0 DASH complex subunit Duo1 Spc7 PF08317.6 gi|257387148|ref|YP_003176921.1| - 0.09 11.4 11.2 0.54 8.8 0.4 3.4 3 1 0 3 3 3 0 Spc7 kinetochore protein Reo_sigmaC PF04582.7 gi|257387148|ref|YP_003176921.1| - 0.11 11.5 24.9 0.035 13.2 3.4 3.4 1 1 2 3 3 3 0 Reovirus sigma C capsid protein DUF1664 PF07889.7 gi|257387148|ref|YP_003176921.1| - 0.21 11.3 19.7 4.9 6.9 1.3 5.4 3 2 4 7 7 7 0 Protein of unknown function (DUF1664) NPV_P10 PF05531.7 gi|257387148|ref|YP_003176921.1| - 0.27 11.5 22.9 1 9.6 0.6 5.7 3 2 2 6 6 5 0 Nucleopolyhedrovirus P10 protein Sec20 PF03908.8 gi|257387148|ref|YP_003176921.1| - 0.34 10.6 9.1 8 6.2 0.0 4.5 3 1 1 4 4 4 0 Sec20 BLOC1_2 PF10046.4 gi|257387148|ref|YP_003176921.1| - 0.38 10.9 18.2 2 8.5 0.2 5.6 3 2 2 6 6 6 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Sec5 PF15469.1 gi|257387148|ref|YP_003176921.1| - 0.42 10.3 6.4 0.73 9.5 0.2 3.1 3 1 0 3 3 2 0 Exocyst complex component Sec5 DUF972 PF06156.8 gi|257387148|ref|YP_003176921.1| - 0.79 10.0 10.4 21 5.5 0.2 4.5 2 2 3 5 5 4 0 Protein of unknown function (DUF972) GAS PF13851.1 gi|257387148|ref|YP_003176921.1| - 0.81 8.8 3.6 14 4.8 0.1 3.2 3 0 0 3 3 3 0 Growth-arrest specific micro-tubule binding Sec8_exocyst PF04048.9 gi|257387148|ref|YP_003176921.1| - 0.89 9.1 5.9 22 4.6 0.1 3.8 3 2 0 3 3 3 0 Sec8 exocyst complex component specific domain COG6 PF06419.6 gi|257387148|ref|YP_003176921.1| - 1.1 7.3 7.2 3.2 5.7 0.1 3.5 3 1 1 4 4 4 0 Conserved oligomeric complex COG6 APG6 PF04111.7 gi|257387148|ref|YP_003176921.1| - 1.7 7.6 17.7 1.1 8.2 0.6 3.5 3 1 0 3 3 3 0 Autophagy protein Apg6 Fib_alpha PF08702.5 gi|257387148|ref|YP_003176921.1| - 1.7 8.7 8.1 7 6.7 0.2 3.7 3 2 1 4 4 3 0 Fibrinogen alpha/beta chain family Seryl_tRNA_N PF02403.17 gi|257387148|ref|YP_003176921.1| - 3 7.8 21.2 20 5.2 0.5 5.3 2 2 3 6 6 5 0 Seryl-tRNA synthetase N-terminal domain ATG_C PF09333.6 gi|257387148|ref|YP_003176921.1| - 3 8.0 15.1 4.1 7.6 0.0 4.7 3 2 0 4 4 4 0 ATG C terminal domain ApoLp-III PF07464.6 gi|257387148|ref|YP_003176921.1| - 3.4 7.6 27.9 0.46 10.5 1.8 4.5 2 2 2 4 4 4 0 Apolipophorin-III precursor (apoLp-III) AAA_27 PF13514.1 gi|257387148|ref|YP_003176921.1| - 3.6 5.1 47.3 11 3.5 21.1 1.9 1 1 0 1 1 1 0 AAA domain Nup54 PF13874.1 gi|257387148|ref|YP_003176921.1| - 3.7 7.2 10.5 2.5 7.7 0.2 4.2 4 1 0 4 4 4 0 Nucleoporin complex subunit 54 Syntaxin-6_N PF09177.6 gi|257387148|ref|YP_003176921.1| - 3.7 7.9 21.2 0.86 10.0 0.3 5.5 2 2 2 5 5 5 0 Syntaxin 6, N-terminal Phage_GP20 PF06810.6 gi|257387148|ref|YP_003176921.1| - 4.3 6.7 11.0 4.5 6.7 0.0 4.3 3 2 1 4 4 4 0 Phage minor structural protein GP20 Tweety PF04906.8 gi|257387148|ref|YP_003176921.1| - 5 5.4 8.8 9.4 4.5 0.2 3.0 1 1 3 4 4 4 0 Tweety BAR_2 PF10455.4 gi|257387148|ref|YP_003176921.1| - 6 5.7 13.1 0.23 10.3 0.6 3.2 2 1 1 4 4 4 0 Bin/amphiphysin/Rvs domain for vesicular trafficking V_ATPase_I PF01496.14 gi|257387148|ref|YP_003176921.1| - 8.7 4.0 11.2 8.7 4.0 2.8 2.4 1 1 2 3 3 3 0 V-type ATPase 116kDa subunit family Aminotran_5 PF00266.14 gi|257387149|ref|YP_003176922.1| - 7.7e-31 107.1 0.0 9.8e-31 106.7 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V DUF4397 PF14344.1 gi|257387150|ref|YP_003176923.1| - 1.6e-39 135.0 19.9 2.5e-29 102.0 6.7 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF4397) Y_Y_Y PF07495.8 gi|257387150|ref|YP_003176923.1| - 0.0006 19.5 0.0 0.0037 16.9 0.0 2.2 2 0 0 2 2 2 1 Y_Y_Y domain AAA_3 PF07726.6 gi|257387151|ref|YP_003176924.1| - 7.1e-65 216.5 0.0 1.1e-64 215.9 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|257387151|ref|YP_003176924.1| - 2.7e-14 53.0 0.0 5.9e-14 51.9 0.0 1.6 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.21 gi|257387151|ref|YP_003176924.1| - 3.6e-05 23.3 0.0 0.00017 21.1 0.0 1.9 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA PF00004.24 gi|257387151|ref|YP_003176924.1| - 4.2e-05 23.7 0.0 0.00044 20.4 0.0 2.5 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) MCM PF00493.18 gi|257387151|ref|YP_003176924.1| - 0.00027 19.8 0.0 0.049 12.4 0.0 2.1 2 0 0 2 2 2 2 MCM2/3/5 family RuvB_N PF05496.7 gi|257387151|ref|YP_003176924.1| - 0.028 13.4 0.0 1.2 8.1 0.0 2.4 2 1 0 2 2 2 0 Holliday junction DNA helicase ruvB N-terminus AAA_22 PF13401.1 gi|257387151|ref|YP_003176924.1| - 0.054 13.6 0.0 0.16 12.1 0.0 1.9 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.16 gi|257387151|ref|YP_003176924.1| - 0.065 12.3 0.0 3.6 6.6 0.0 2.2 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI Pyridox_oxidase PF01243.15 gi|257387152|ref|YP_003176925.1| - 1.2e-07 31.6 0.0 1.6e-07 31.2 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_ox_2 PF12900.2 gi|257387152|ref|YP_003176925.1| - 0.00049 19.9 0.0 0.00063 19.5 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase DUF385 PF04075.9 gi|257387152|ref|YP_003176925.1| - 0.075 12.9 0.0 0.092 12.7 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF385) DUF58 PF01882.13 gi|257387154|ref|YP_003176927.1| - 2e-17 63.0 0.3 4.9e-17 61.8 0.2 1.6 1 0 0 1 1 1 1 Protein of unknown function DUF58 DUF11 PF01345.13 gi|257387154|ref|YP_003176927.1| - 1.2e-12 47.6 4.4 1.2e-12 47.6 3.0 2.6 2 0 0 2 2 2 1 Domain of unknown function DUF11 NPCBM_assoc PF10633.4 gi|257387154|ref|YP_003176927.1| - 1.6e-07 31.3 0.3 1.6e-07 31.3 0.2 2.9 3 0 0 3 3 3 1 NPCBM-associated, NEW3 domain of alpha-galactosidase TRAP_beta PF05753.9 gi|257387154|ref|YP_003176927.1| - 1.3e-06 27.6 0.0 2.1e-06 26.9 0.0 1.2 1 0 0 1 1 1 1 Translocon-associated protein beta (TRAPB) CARDB PF07705.6 gi|257387154|ref|YP_003176927.1| - 0.0011 18.9 0.0 0.0028 17.6 0.0 1.6 1 0 0 1 1 1 1 CARDB Inhibitor_I78 PF11720.3 gi|257387154|ref|YP_003176927.1| - 0.0082 15.8 0.3 2.6 7.8 0.0 2.5 2 0 0 2 2 2 2 Peptidase inhibitor I78 family DUF1880 PF08976.6 gi|257387154|ref|YP_003176927.1| - 0.41 10.7 2.4 0.54 10.3 0.0 2.4 3 1 0 3 3 3 0 Domain of unknown function (DUF1880) Transglut_core PF01841.14 gi|257387156|ref|YP_003176929.1| - 3e-28 98.2 0.2 3e-28 98.2 0.2 2.3 3 0 0 3 3 3 1 Transglutaminase-like superfamily DUF3488 PF11992.3 gi|257387156|ref|YP_003176929.1| - 2.3e-07 29.8 0.0 2.3e-07 29.8 0.0 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF3488) DUF4129 PF13559.1 gi|257387156|ref|YP_003176929.1| - 0.00024 20.9 4.2 0.00024 20.9 2.9 4.6 4 1 0 4 4 4 2 Domain of unknown function (DUF4129) DUF4198 PF10670.4 gi|257387156|ref|YP_003176929.1| - 0.0016 18.5 1.8 0.11 12.4 0.0 3.0 3 0 0 3 3 3 1 Domain of unknown function (DUF4198) Transglut_core3 PF13471.1 gi|257387156|ref|YP_003176929.1| - 0.012 15.4 3.9 0.013 15.3 0.0 2.9 3 1 0 3 3 3 0 Transglutaminase-like superfamily PEGA PF08308.6 gi|257387156|ref|YP_003176929.1| - 0.062 13.1 2.3 2.6 7.9 0.2 3.0 2 0 0 2 2 2 0 PEGA domain DUF4153 PF13687.1 gi|257387156|ref|YP_003176929.1| - 0.32 10.4 1.1 1.3 8.4 0.7 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4153) Cys_Met_Meta_PP PF01053.15 gi|257387157|ref|YP_003176930.1| - 7.1e-132 439.3 0.0 8.1e-132 439.1 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|257387157|ref|YP_003176930.1| - 1.3e-06 27.7 0.2 2.1e-06 27.0 0.1 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.16 gi|257387157|ref|YP_003176930.1| - 1.4e-06 27.4 0.0 2e-06 26.9 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|257387157|ref|YP_003176930.1| - 1.5e-05 23.8 0.0 2.3e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Peptidase_C15 PF01470.12 gi|257387157|ref|YP_003176930.1| - 0.06 13.1 0.0 0.095 12.5 0.0 1.3 1 0 0 1 1 1 0 Pyroglutamyl peptidase Abhydrolase_1 PF00561.15 gi|257387158|ref|YP_003176931.1| - 1.8e-23 83.3 0.2 2.3e-23 82.9 0.1 1.1 1 0 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.2 gi|257387158|ref|YP_003176931.1| - 1.1e-16 61.4 5.6 1.6e-16 60.9 3.9 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|257387158|ref|YP_003176931.1| - 0.00059 19.6 0.7 0.0016 18.2 0.2 1.9 2 1 0 2 2 2 1 Alpha/beta hydrolase family Esterase PF00756.15 gi|257387158|ref|YP_003176931.1| - 0.0071 15.7 0.0 0.012 15.1 0.0 1.4 1 0 0 1 1 1 1 Putative esterase Tannase PF07519.6 gi|257387158|ref|YP_003176931.1| - 0.029 13.1 0.0 0.056 12.1 0.0 1.4 1 0 0 1 1 1 0 Tannase and feruloyl esterase SBP_bac_8 PF13416.1 gi|257387158|ref|YP_003176931.1| - 0.042 13.5 0.1 0.62 9.7 0.0 2.1 2 0 0 2 2 2 0 Bacterial extracellular solute-binding protein HypA PF01155.14 gi|257387159|ref|YP_003176932.1| - 0.00031 20.4 0.1 0.00039 20.0 0.1 1.2 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family zf-ribbon_3 PF13248.1 gi|257387159|ref|YP_003176932.1| - 0.017 14.2 0.6 1.3 8.2 0.3 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-CCHC_6 PF15288.1 gi|257387159|ref|YP_003176932.1| - 0.022 14.4 2.9 0.059 13.0 0.1 2.2 2 0 0 2 2 2 0 Zinc knuckle PRC PF05239.11 gi|257387159|ref|YP_003176932.1| - 0.039 13.8 0.1 0.06 13.2 0.0 1.4 1 0 0 1 1 1 0 PRC-barrel domain DnaJ_CXXCXGXG PF00684.14 gi|257387159|ref|YP_003176932.1| - 0.07 13.1 0.1 0.096 12.7 0.1 1.2 1 0 0 1 1 1 0 DnaJ central domain XPA_N PF01286.13 gi|257387159|ref|YP_003176932.1| - 0.15 11.7 1.2 0.29 10.8 0.1 1.8 2 0 0 2 2 2 0 XPA protein N-terminal zinc_ribbon_2 PF13240.1 gi|257387159|ref|YP_003176932.1| - 0.3 10.6 1.7 3 7.4 0.3 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|257387159|ref|YP_003176932.1| - 0.36 10.8 2.7 0.73 9.8 1.9 1.5 1 1 0 1 1 1 0 Zinc ribbon domain Rubredoxin PF00301.15 gi|257387159|ref|YP_003176932.1| - 0.62 9.9 10.5 0.18 11.7 1.1 2.4 1 1 1 2 2 2 0 Rubredoxin ApbA_C PF08546.6 gi|257387161|ref|YP_003176934.1| - 7e-34 116.5 0.2 1.1e-33 115.8 0.1 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA C terminal ApbA PF02558.11 gi|257387161|ref|YP_003176934.1| - 1.8e-26 92.4 0.2 2.8e-26 91.7 0.1 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA DUF4530 PF15039.1 gi|257387161|ref|YP_003176934.1| - 0.28 11.0 1.2 2.1 8.2 0.0 2.6 2 1 1 3 3 3 0 Domain of unknown function (DUF4530) UPF0104 PF03706.8 gi|257387162|ref|YP_003176935.1| - 2.9e-41 141.6 33.9 3.9e-41 141.2 23.5 1.1 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) Sulfatase PF00884.18 gi|257387163|ref|YP_003176936.1| - 1.3e-46 159.2 0.5 1.8e-46 158.7 0.3 1.2 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|257387163|ref|YP_003176936.1| - 2e-13 50.4 0.4 6.8e-07 28.9 0.0 2.3 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF1501 PF07394.7 gi|257387163|ref|YP_003176936.1| - 0.0025 16.7 0.2 0.0041 16.0 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1501) DUF229 PF02995.12 gi|257387163|ref|YP_003176936.1| - 0.029 12.7 0.0 0.037 12.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF229) DUF310 PF03750.8 gi|257387163|ref|YP_003176936.1| - 0.092 12.9 0.0 0.25 11.5 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF310) HEM4 PF02602.10 gi|257387164|ref|YP_003176937.1| - 1.2e-42 145.7 3.5 1.4e-42 145.5 2.4 1.0 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD TP_methylase PF00590.15 gi|257387165|ref|YP_003176938.1| - 4.2e-54 183.4 1.4 5.2e-54 183.1 1.0 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Radical_SAM PF04055.16 gi|257387165|ref|YP_003176938.1| - 0.022 14.9 0.0 0.045 13.9 0.0 1.5 1 1 0 1 1 1 0 Radical SAM superfamily Porphobil_deam PF01379.15 gi|257387166|ref|YP_003176939.1| - 2.1e-63 213.1 0.1 5.1e-53 179.1 0.0 2.1 2 0 0 2 2 2 2 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.10 gi|257387166|ref|YP_003176939.1| - 3.9e-09 36.4 0.1 1.3e-08 34.8 0.1 1.9 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain LytR_C PF13399.1 gi|257387166|ref|YP_003176939.1| - 0.34 11.2 3.7 0.97 9.8 0.0 3.2 3 1 0 3 3 3 0 LytR cell envelope-related transcriptional attenuator DUF46 PF01864.12 gi|257387167|ref|YP_003176940.1| - 3.4e-47 160.5 0.7 4e-47 160.3 0.5 1.0 1 0 0 1 1 1 1 Putative integral membrane protein DUF46 CTP_transf_1 PF01148.15 gi|257387167|ref|YP_003176940.1| - 2.4e-05 24.1 2.8 2.7e-05 23.9 0.7 1.9 1 1 1 2 2 2 1 Cytidylyltransferase family Pro_dh PF01619.13 gi|257387168|ref|YP_003176941.1| - 3.7e-36 124.6 0.0 7.5e-36 123.6 0.0 1.5 1 1 0 1 1 1 1 Proline dehydrogenase DUF502 PF04367.8 gi|257387169|ref|YP_003176942.1| - 2.8e-18 65.6 1.3 3.7e-18 65.2 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF502) Fijivirus_P9-2 PF06837.6 gi|257387169|ref|YP_003176942.1| - 0.13 11.4 0.5 0.4 9.7 0.0 1.9 2 0 0 2 2 2 0 Fijivirus P9-2 protein DUF4013 PF13197.1 gi|257387169|ref|YP_003176942.1| - 0.24 10.6 5.8 0.45 9.8 4.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF4013) Aminotran_4 PF01063.14 gi|257387170|ref|YP_003176943.1| - 1.3e-42 145.8 0.0 1.6e-42 145.5 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class IV Rsa3 PF14615.1 gi|257387170|ref|YP_003176943.1| - 0.11 11.7 0.0 0.24 10.7 0.0 1.5 1 0 0 1 1 1 0 Ribosome-assembly protein 3 DHBP_synthase PF00926.14 gi|257387172|ref|YP_003176945.1| - 9.7e-57 191.3 0.0 1.1e-56 191.1 0.0 1.0 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase CTP-dep_RFKase PF01982.11 gi|257387173|ref|YP_003176946.1| - 3e-43 146.2 0.0 4.5e-43 145.7 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF120 HTH_20 PF12840.2 gi|257387173|ref|YP_003176946.1| - 8.9e-07 28.6 0.3 1.9e-06 27.5 0.2 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|257387173|ref|YP_003176946.1| - 0.00015 21.1 0.1 0.00027 20.2 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|257387173|ref|YP_003176946.1| - 0.00055 19.5 0.1 0.00097 18.8 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_AsnC-type PF13404.1 gi|257387173|ref|YP_003176946.1| - 0.00092 18.6 0.5 0.0021 17.5 0.3 1.7 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.2 gi|257387173|ref|YP_003176946.1| - 0.00093 18.8 0.1 0.0017 17.9 0.1 1.4 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|257387173|ref|YP_003176946.1| - 0.0062 16.1 0.1 0.011 15.3 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_27 PF13463.1 gi|257387173|ref|YP_003176946.1| - 0.0099 16.1 0.1 0.023 15.0 0.1 1.7 2 0 0 2 2 1 1 Winged helix DNA-binding domain HTH_1 PF00126.22 gi|257387173|ref|YP_003176946.1| - 0.069 12.8 0.5 0.16 11.7 0.3 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_34 PF13601.1 gi|257387173|ref|YP_003176946.1| - 0.079 13.0 0.0 0.13 12.2 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_DeoR PF08220.7 gi|257387173|ref|YP_003176946.1| - 0.082 12.4 0.1 0.17 11.4 0.0 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|257387173|ref|YP_003176946.1| - 0.1 12.3 0.5 0.31 10.8 0.2 1.9 1 1 1 2 2 2 0 Crp-like helix-turn-helix domain DUF1049 PF06305.6 gi|257387174|ref|YP_003176947.1| - 0.076 12.4 0.5 0.076 12.4 0.3 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF1049) TRIQK PF15168.1 gi|257387174|ref|YP_003176947.1| - 0.077 12.9 0.0 0.35 10.8 0.0 1.8 2 0 0 2 2 2 0 Triple QxxK/R motif-containing protein family PHP PF02811.14 gi|257387176|ref|YP_003176949.1| - 8.6e-12 45.1 0.0 1.1e-11 44.7 0.0 1.3 1 1 0 1 1 1 1 PHP domain PHP_C PF13263.1 gi|257387176|ref|YP_003176949.1| - 0.0037 16.7 0.1 0.0083 15.6 0.1 1.5 1 0 0 1 1 1 1 PHP-associated YyzF PF14116.1 gi|257387177|ref|YP_003176950.1| - 1.7 8.6 4.2 1.8 8.5 0.3 2.3 2 1 0 2 2 2 0 YyzF-like protein Cupin_2 PF07883.6 gi|257387178|ref|YP_003176951.1| - 6.5e-14 51.1 0.2 1e-13 50.5 0.2 1.3 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|257387178|ref|YP_003176951.1| - 1.2e-05 25.0 0.0 1.6e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain Lar_restr_allev PF14354.1 gi|257387178|ref|YP_003176951.1| - 0.025 14.8 0.7 0.048 13.9 0.5 1.5 1 0 0 1 1 1 0 Restriction alleviation protein Lar Pirin PF02678.11 gi|257387178|ref|YP_003176951.1| - 0.025 14.4 0.0 0.035 13.9 0.0 1.2 1 0 0 1 1 1 0 Pirin DUF2387 PF09526.5 gi|257387178|ref|YP_003176951.1| - 0.031 14.1 0.7 0.051 13.4 0.5 1.3 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) Cupin_3 PF05899.7 gi|257387178|ref|YP_003176951.1| - 0.057 12.8 0.2 0.11 11.9 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF861) Cupin_1 PF00190.17 gi|257387178|ref|YP_003176951.1| - 0.086 12.2 0.1 0.86 9.0 0.0 2.2 1 1 0 1 1 1 0 Cupin GATA PF00320.22 gi|257387178|ref|YP_003176951.1| - 0.13 11.6 0.5 0.2 11.0 0.3 1.3 1 0 0 1 1 1 0 GATA zinc finger DUF1884 PF08967.5 gi|257387179|ref|YP_003176952.1| - 0.0025 17.8 4.6 10 6.2 0.1 3.6 1 1 2 3 3 3 3 Domain of unknown function (DUF1884) Reprolysin_3 PF13582.1 gi|257387179|ref|YP_003176952.1| - 0.024 15.1 0.1 0.083 13.4 0.0 2.0 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Acyl-CoA_dh_1 PF00441.19 gi|257387180|ref|YP_003176953.1| - 5.3e-34 117.4 2.6 7.2e-34 117.0 1.8 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|257387180|ref|YP_003176953.1| - 1.1e-24 87.1 0.2 2.9e-24 85.8 0.0 1.8 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.14 gi|257387180|ref|YP_003176953.1| - 5.7e-23 80.1 0.1 1.6e-22 78.7 0.0 1.8 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|257387180|ref|YP_003176953.1| - 2.6e-14 53.6 3.9 4.1e-14 52.9 2.7 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain GATase PF00117.23 gi|257387181|ref|YP_003176954.1| - 5e-22 78.2 0.0 7e-22 77.8 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|257387181|ref|YP_003176954.1| - 9.4e-07 28.4 0.0 2.7e-05 23.7 0.0 2.7 1 1 0 1 1 1 1 Peptidase C26 HTS PF04204.11 gi|257387181|ref|YP_003176954.1| - 0.00048 18.9 0.0 0.00093 18.0 0.0 1.5 1 1 0 1 1 1 1 Homoserine O-succinyltransferase Abhydrolase_6 PF12697.2 gi|257387182|ref|YP_003176955.1| - 9.2e-27 94.3 15.5 1.1e-26 94.2 10.7 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|257387182|ref|YP_003176955.1| - 2.9e-22 79.3 1.7 6.2e-20 71.7 1.2 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|257387182|ref|YP_003176955.1| - 4e-13 49.3 0.9 1e-12 48.0 0.6 1.6 1 1 0 1 1 1 1 Alpha/beta hydrolase family FSH1 PF03959.8 gi|257387182|ref|YP_003176955.1| - 0.0035 16.8 0.0 0.22 10.9 0.0 2.1 1 1 1 2 2 2 1 Serine hydrolase (FSH1) Peptidase_S9 PF00326.16 gi|257387182|ref|YP_003176955.1| - 0.011 14.9 0.1 0.03 13.5 0.0 1.7 1 1 1 2 2 2 0 Prolyl oligopeptidase family Abhydrolase_4 PF08386.5 gi|257387182|ref|YP_003176955.1| - 0.015 15.1 0.0 0.028 14.3 0.0 1.4 1 0 0 1 1 1 0 TAP-like protein NAD_binding_8 PF13450.1 gi|257387182|ref|YP_003176955.1| - 0.023 14.7 0.3 0.051 13.6 0.2 1.6 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain LIP PF03583.9 gi|257387182|ref|YP_003176955.1| - 0.032 13.4 0.0 0.096 11.8 0.0 1.8 2 0 0 2 2 2 0 Secretory lipase Esterase_phd PF10503.4 gi|257387182|ref|YP_003176955.1| - 0.034 13.3 5.2 0.14 11.4 0.0 2.2 1 1 0 2 2 2 0 Esterase PHB depolymerase DUF2048 PF09752.4 gi|257387182|ref|YP_003176955.1| - 0.15 10.9 0.3 0.33 9.7 0.2 1.6 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2048) Abhydrolase_2 PF02230.11 gi|257387182|ref|YP_003176955.1| - 0.15 11.4 0.0 0.81 9.0 0.0 1.9 2 0 0 2 2 2 0 Phospholipase/Carboxylesterase DUF4013 PF13197.1 gi|257387183|ref|YP_003176956.1| - 2.2e-18 66.1 11.9 3.6e-18 65.4 8.3 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF4013) zf-ribbon_3 PF13248.1 gi|257387183|ref|YP_003176956.1| - 0.00041 19.4 2.0 0.001 18.1 1.4 1.7 1 0 0 1 1 1 1 zinc-ribbon domain Nudix_N_2 PF14803.1 gi|257387183|ref|YP_003176956.1| - 0.003 17.2 2.7 0.12 12.1 0.2 2.4 2 0 0 2 2 2 2 Nudix N-terminal DZR PF12773.2 gi|257387183|ref|YP_003176956.1| - 0.0033 17.1 1.7 0.0055 16.5 1.2 1.3 1 0 0 1 1 1 1 Double zinc ribbon DNA_ligase_ZBD PF03119.11 gi|257387183|ref|YP_003176956.1| - 0.036 13.7 0.7 0.29 10.8 0.1 2.4 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zinc_ribbon_2 PF13240.1 gi|257387183|ref|YP_003176956.1| - 1.1 8.8 4.6 3.7 7.1 3.2 1.9 1 1 0 1 1 1 0 zinc-ribbon domain tRNA-synt_2c PF01411.14 gi|257387184|ref|YP_003176957.1| - 3.5e-117 391.9 0.0 4.5e-117 391.6 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) tRNA_SAD PF07973.9 gi|257387184|ref|YP_003176957.1| - 2.2e-12 46.6 0.5 4.8e-12 45.5 0.4 1.6 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain DHHA1 PF02272.14 gi|257387184|ref|YP_003176957.1| - 3.4e-09 36.2 5.7 1e-08 34.7 4.0 1.9 1 0 0 1 1 1 1 DHHA1 domain YqhR PF11085.3 gi|257387185|ref|YP_003176958.1| - 5.7 6.4 5.8 13 5.3 0.3 2.2 1 1 1 2 2 2 0 Conserved membrane protein YqhR Rep_fac_C PF08542.6 gi|257387186|ref|YP_003176959.1| - 1.9e-23 82.2 0.0 3.9e-23 81.2 0.0 1.6 1 0 0 1 1 1 1 Replication factor C C-terminal domain AAA PF00004.24 gi|257387186|ref|YP_003176959.1| - 8.2e-19 68.1 0.0 3.1e-18 66.2 0.0 1.8 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.1 gi|257387186|ref|YP_003176959.1| - 2.8e-17 62.8 0.0 5.7e-15 55.3 0.0 2.2 1 1 0 1 1 1 1 DNA polymerase III, delta subunit Rad17 PF03215.10 gi|257387186|ref|YP_003176959.1| - 2.6e-09 36.3 0.0 1e-06 27.7 0.0 2.2 2 0 0 2 2 2 2 Rad17 cell cycle checkpoint protein RuvB_N PF05496.7 gi|257387186|ref|YP_003176959.1| - 1e-08 34.5 0.0 6.4e-08 31.9 0.0 2.1 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|257387186|ref|YP_003176959.1| - 1.1e-08 35.3 0.9 0.00018 21.5 0.0 3.3 2 2 1 3 3 3 1 AAA ATPase domain AAA_22 PF13401.1 gi|257387186|ref|YP_003176959.1| - 1.3e-07 31.7 0.1 0.0042 17.2 0.0 2.3 1 1 1 2 2 2 2 AAA domain AAA_14 PF13173.1 gi|257387186|ref|YP_003176959.1| - 1.4e-07 31.4 0.0 2.5e-07 30.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain TIP49 PF06068.8 gi|257387186|ref|YP_003176959.1| - 0.00014 20.7 0.0 0.011 14.4 0.0 2.7 1 1 1 2 2 2 1 TIP49 C-terminus AAA_25 PF13481.1 gi|257387186|ref|YP_003176959.1| - 0.00017 21.0 0.2 0.00071 19.0 0.0 2.0 1 1 1 2 2 2 1 AAA domain DNA_pol3_delta PF06144.8 gi|257387186|ref|YP_003176959.1| - 0.00031 20.3 0.0 0.00055 19.4 0.0 1.4 1 0 0 1 1 1 1 DNA polymerase III, delta subunit Mg_chelatase PF01078.16 gi|257387186|ref|YP_003176959.1| - 0.00042 19.5 0.0 0.081 12.0 0.0 2.2 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.21 gi|257387186|ref|YP_003176959.1| - 0.00046 19.7 0.0 0.017 14.6 0.0 2.3 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_19 PF13245.1 gi|257387186|ref|YP_003176959.1| - 0.00058 19.5 0.0 0.0012 18.4 0.0 1.5 1 0 0 1 1 1 1 Part of AAA domain Sigma54_activ_2 PF14532.1 gi|257387186|ref|YP_003176959.1| - 0.00078 19.5 0.0 0.0016 18.5 0.0 1.4 1 0 0 1 1 1 1 Sigma-54 interaction domain IstB_IS21 PF01695.12 gi|257387186|ref|YP_003176959.1| - 0.001 18.4 0.0 0.0022 17.4 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_3 PF07726.6 gi|257387186|ref|YP_003176959.1| - 0.0014 18.2 0.0 0.0029 17.2 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|257387186|ref|YP_003176959.1| - 0.0019 19.0 0.4 0.0057 17.4 0.3 2.1 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|257387186|ref|YP_003176959.1| - 0.0046 17.2 0.0 0.021 15.1 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_5 PF07728.9 gi|257387186|ref|YP_003176959.1| - 0.0062 16.2 0.0 0.032 13.9 0.0 2.1 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) PhoH PF02562.11 gi|257387186|ref|YP_003176959.1| - 0.011 14.9 0.0 0.076 12.2 0.0 2.1 2 0 0 2 2 2 0 PhoH-like protein AAA_29 PF13555.1 gi|257387186|ref|YP_003176959.1| - 0.012 15.1 0.0 0.023 14.2 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain PEPCK_ATP PF01293.15 gi|257387186|ref|YP_003176959.1| - 0.012 14.1 0.0 0.019 13.5 0.0 1.2 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxykinase AAA_30 PF13604.1 gi|257387186|ref|YP_003176959.1| - 0.013 15.0 0.1 0.038 13.5 0.1 1.8 1 1 0 1 1 1 0 AAA domain T2SE PF00437.15 gi|257387186|ref|YP_003176959.1| - 0.014 14.2 0.0 0.025 13.4 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_2 PF07724.9 gi|257387186|ref|YP_003176959.1| - 0.03 14.2 0.0 0.077 12.9 0.0 1.8 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) NB-ARC PF00931.17 gi|257387186|ref|YP_003176959.1| - 0.04 12.7 0.0 0.063 12.1 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain Viral_helicase1 PF01443.13 gi|257387186|ref|YP_003176959.1| - 0.044 13.3 0.0 0.064 12.7 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase SNF2_N PF00176.18 gi|257387186|ref|YP_003176959.1| - 0.049 12.4 0.0 0.38 9.4 0.0 1.9 2 0 0 2 2 2 0 SNF2 family N-terminal domain DUF3400 PF11880.3 gi|257387186|ref|YP_003176959.1| - 0.054 12.7 0.0 0.18 11.0 0.0 1.9 1 0 0 1 1 1 0 Domain of unknown function (DUF3400) DUF815 PF05673.8 gi|257387186|ref|YP_003176959.1| - 0.059 12.2 0.0 0.086 11.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF815) ResIII PF04851.10 gi|257387186|ref|YP_003176959.1| - 0.061 13.1 0.0 0.13 12.0 0.0 1.6 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_10 PF12846.2 gi|257387186|ref|YP_003176959.1| - 0.065 12.6 0.4 6.2 6.1 0.0 2.3 1 1 1 2 2 2 0 AAA-like domain RNA_helicase PF00910.17 gi|257387186|ref|YP_003176959.1| - 0.11 12.6 0.0 0.22 11.7 0.0 1.5 1 0 0 1 1 1 0 RNA helicase DUF87 PF01935.12 gi|257387186|ref|YP_003176959.1| - 0.12 12.1 0.0 0.94 9.2 0.0 2.1 1 1 1 2 2 2 0 Domain of unknown function DUF87 NACHT PF05729.7 gi|257387186|ref|YP_003176959.1| - 0.13 11.9 0.0 0.72 9.4 0.0 2.1 2 1 0 2 2 2 0 NACHT domain AAA_33 PF13671.1 gi|257387186|ref|YP_003176959.1| - 0.14 12.0 0.0 0.31 10.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain Methyltransf_11 PF08241.7 gi|257387187|ref|YP_003176960.1| - 1.4e-24 86.3 0.0 2.6e-24 85.5 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|257387187|ref|YP_003176960.1| - 4.3e-18 65.3 0.0 5.3e-18 65.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|257387187|ref|YP_003176960.1| - 4.3e-15 55.8 0.1 6.2e-15 55.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|257387187|ref|YP_003176960.1| - 3.7e-14 52.9 0.0 6.4e-14 52.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|257387187|ref|YP_003176960.1| - 5.6e-13 49.4 0.0 9.5e-13 48.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|257387187|ref|YP_003176960.1| - 7.3e-11 42.1 0.1 1.4e-10 41.2 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|257387187|ref|YP_003176960.1| - 9.2e-11 42.1 0.0 1.4e-10 41.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|257387187|ref|YP_003176960.1| - 6.4e-10 38.5 0.0 9.2e-10 38.0 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_9 PF08003.6 gi|257387187|ref|YP_003176960.1| - 4.5e-07 28.8 0.0 6.5e-07 28.3 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_32 PF13679.1 gi|257387187|ref|YP_003176960.1| - 0.00014 21.5 0.0 0.00022 20.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain N6_N4_Mtase PF01555.13 gi|257387187|ref|YP_003176960.1| - 0.00046 19.7 0.0 0.14 11.6 0.0 2.2 2 0 0 2 2 2 2 DNA methylase Methyltransf_8 PF05148.10 gi|257387187|ref|YP_003176960.1| - 0.00065 19.3 0.0 0.0025 17.4 0.0 1.8 1 1 0 1 1 1 1 Hypothetical methyltransferase PCMT PF01135.14 gi|257387187|ref|YP_003176960.1| - 0.0026 17.3 0.0 0.0045 16.5 0.0 1.4 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MetW PF07021.7 gi|257387187|ref|YP_003176960.1| - 0.0038 16.6 0.0 0.0078 15.5 0.0 1.5 1 1 0 1 1 1 1 Methionine biosynthesis protein MetW MTS PF05175.9 gi|257387187|ref|YP_003176960.1| - 0.0084 15.4 0.0 0.026 13.8 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_29 PF03141.11 gi|257387187|ref|YP_003176960.1| - 0.027 12.8 0.0 0.038 12.3 0.0 1.3 1 1 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase FtsJ PF01728.14 gi|257387187|ref|YP_003176960.1| - 0.035 14.0 0.0 0.23 11.4 0.0 1.9 1 1 0 1 1 1 0 FtsJ-like methyltransferase PrmA PF06325.8 gi|257387187|ref|YP_003176960.1| - 0.066 12.3 0.0 0.12 11.4 0.0 1.4 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) DUF4281 PF14108.1 gi|257387188|ref|YP_003176961.1| - 0.0029 17.6 6.2 0.13 12.4 0.5 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF4281) YrhC PF14143.1 gi|257387188|ref|YP_003176961.1| - 0.016 15.1 0.0 0.028 14.3 0.0 1.4 1 0 0 1 1 1 0 YrhC-like protein 7TMR-DISM_7TM PF07695.6 gi|257387188|ref|YP_003176961.1| - 0.028 14.1 0.4 0.058 13.0 0.2 1.6 1 1 0 1 1 1 0 7TM diverse intracellular signalling PLDc_N PF13396.1 gi|257387188|ref|YP_003176961.1| - 0.032 13.8 0.3 0.032 13.8 0.2 2.5 2 1 0 2 2 2 0 Phospholipase_D-nuclease N-terminal TatC PF00902.13 gi|257387188|ref|YP_003176961.1| - 0.046 13.1 0.5 0.046 13.1 0.3 2.3 2 1 0 2 2 2 0 Sec-independent protein translocase protein (TatC) ATPase_gene1 PF09527.5 gi|257387188|ref|YP_003176961.1| - 3.2 7.6 7.5 0.72 9.6 0.5 2.7 3 0 0 3 3 3 0 Putative F0F1-ATPase subunit (ATPase_gene1) DUF2391 PF09622.5 gi|257387189|ref|YP_003176962.1| - 4.2e-05 22.8 1.0 5.7e-05 22.3 0.7 1.4 1 1 0 1 1 1 1 Putative integral membrane protein (DUF2391) COX4_pro PF03626.9 gi|257387189|ref|YP_003176962.1| - 2.7 8.1 6.8 2.8 8.0 0.1 2.3 2 0 0 2 2 2 0 Prokaryotic Cytochrome C oxidase subunit IV KaiC PF06745.8 gi|257387190|ref|YP_003176963.1| - 0.00029 20.0 0.1 0.00036 19.7 0.1 1.1 1 0 0 1 1 1 1 KaiC Glyco_trans_1_2 PF13524.1 gi|257387190|ref|YP_003176963.1| - 0.0024 18.1 0.5 2.2 8.6 0.0 3.1 2 1 1 3 3 3 1 Glycosyl transferases group 1 DUF835 PF05763.7 gi|257387190|ref|YP_003176963.1| - 0.12 11.9 0.0 0.19 11.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF835) zf-ribbon_3 PF13248.1 gi|257387191|ref|YP_003176964.1| - 0.0016 17.6 1.3 0.22 10.7 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|257387191|ref|YP_003176964.1| - 0.0067 15.8 1.8 1.8 8.1 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|257387191|ref|YP_003176964.1| - 0.0082 15.9 1.1 0.014 15.1 0.7 1.4 1 1 0 1 1 1 1 Double zinc ribbon UPF0547 PF10571.4 gi|257387191|ref|YP_003176964.1| - 0.038 13.6 1.3 0.62 9.8 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 RecR PF02132.10 gi|257387191|ref|YP_003176964.1| - 0.1 12.0 5.3 0.34 10.3 3.7 1.8 1 1 0 1 1 1 0 RecR protein zf-ISL3 PF14690.1 gi|257387191|ref|YP_003176964.1| - 0.1 12.6 0.8 2.9 7.9 0.1 2.1 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-HYPF PF07503.7 gi|257387191|ref|YP_003176964.1| - 0.11 11.9 1.8 1.1 8.6 0.1 2.2 2 0 0 2 2 2 0 HypF finger FYVE PF01363.16 gi|257387191|ref|YP_003176964.1| - 0.15 11.9 0.5 0.32 10.9 0.3 1.5 1 1 0 1 1 1 0 FYVE zinc finger DUF3797 PF12677.2 gi|257387191|ref|YP_003176964.1| - 0.27 10.8 2.0 5.7 6.6 0.2 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF3797) Nudix_N_2 PF14803.1 gi|257387191|ref|YP_003176964.1| - 0.32 10.7 2.4 3.1 7.5 1.6 2.1 1 1 0 1 1 1 0 Nudix N-terminal Zn-ribbon_8 PF09723.5 gi|257387191|ref|YP_003176964.1| - 0.52 10.2 5.2 3.4 7.6 3.4 2.0 1 1 0 1 1 1 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|257387191|ref|YP_003176964.1| - 1.2 8.9 4.7 1.7 8.5 0.4 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zf-NADH-PPase PF09297.6 gi|257387191|ref|YP_003176964.1| - 1.7 8.2 5.2 6.9 6.2 0.4 2.6 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain PGM_PMM_I PF02878.11 gi|257387192|ref|YP_003176965.1| - 3e-30 104.5 0.0 5.4e-30 103.6 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|257387192|ref|YP_003176965.1| - 8.5e-18 64.6 0.4 8.5e-18 64.6 0.3 1.8 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.11 gi|257387192|ref|YP_003176965.1| - 4.2e-17 62.2 0.0 8.6e-17 61.2 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.15 gi|257387192|ref|YP_003176965.1| - 6.7e-12 45.2 2.0 1.3e-11 44.3 0.4 2.2 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain HupE_UreJ PF04955.7 gi|257387193|ref|YP_003176966.1| - 0.031 13.5 0.9 0.037 13.3 0.6 1.1 1 0 0 1 1 1 0 HupE / UreJ protein DUF4386 PF14329.1 gi|257387194|ref|YP_003176967.1| - 0.0089 15.5 1.5 0.014 14.8 1.1 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4386) NADH-u_ox-rdase PF10785.4 gi|257387194|ref|YP_003176967.1| - 0.017 15.3 1.6 0.023 14.9 1.1 1.1 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit Rib_5-P_isom_A PF06026.9 gi|257387195|ref|YP_003176968.1| - 2.5e-54 183.2 0.0 3e-54 182.9 0.0 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.17 gi|257387195|ref|YP_003176968.1| - 3.1e-05 23.6 0.3 0.00012 21.7 0.1 1.9 2 0 0 2 2 2 1 DeoR C terminal sensor domain Sugar-bind PF04198.8 gi|257387195|ref|YP_003176968.1| - 0.051 12.4 0.1 0.074 11.9 0.1 1.2 1 0 0 1 1 1 0 Putative sugar-binding domain Histone PF00125.19 gi|257387196|ref|YP_003176969.1| - 0.00058 19.9 0.1 0.0006 19.8 0.0 1.3 1 1 0 1 1 1 1 Core histone H2A/H2B/H3/H4 DUF1931 PF09123.6 gi|257387196|ref|YP_003176969.1| - 0.0011 18.9 0.7 0.0012 18.8 0.5 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1931) CBFD_NFYB_HMF PF00808.18 gi|257387196|ref|YP_003176969.1| - 0.0055 16.7 0.0 0.0068 16.4 0.0 1.4 1 1 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone TFIID_20kDa PF03847.8 gi|257387196|ref|YP_003176969.1| - 0.072 13.3 0.8 0.084 13.1 0.5 1.5 1 1 0 1 1 1 0 Transcription initiation factor TFIID subunit A AIRC PF00731.15 gi|257387197|ref|YP_003176970.1| - 5.5e-15 54.9 10.6 1.2e-14 53.8 3.8 2.2 2 0 0 2 2 2 2 AIR carboxylase DZR PF12773.2 gi|257387198|ref|YP_003176971.1| - 0.0021 17.8 0.4 0.0026 17.5 0.3 1.3 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|257387198|ref|YP_003176971.1| - 0.005 16.0 1.3 0.92 8.8 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|257387198|ref|YP_003176971.1| - 0.0067 15.8 2.8 0.051 13.0 1.9 2.0 1 1 0 1 1 1 1 zinc-ribbon domain RNA_POL_M_15KD PF02150.11 gi|257387198|ref|YP_003176971.1| - 0.018 14.7 0.4 1.1 8.9 0.0 2.1 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit zf-C4_Topoisom PF01396.14 gi|257387198|ref|YP_003176971.1| - 0.047 13.2 0.4 9 5.8 0.0 2.1 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger zf-tcix PF14952.1 gi|257387198|ref|YP_003176971.1| - 0.06 12.6 1.2 0.73 9.2 0.2 2.1 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding TerY-C PF15616.1 gi|257387198|ref|YP_003176971.1| - 0.18 11.7 1.3 0.26 11.2 0.9 1.3 1 1 0 1 1 1 0 TerY-C metal binding domain Ogr_Delta PF04606.7 gi|257387198|ref|YP_003176971.1| - 0.21 11.2 3.0 5 6.8 0.3 2.2 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zinc_ribbon_4 PF13717.1 gi|257387198|ref|YP_003176971.1| - 0.24 11.1 2.0 2 8.1 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|257387198|ref|YP_003176971.1| - 0.27 10.8 2.0 2.1 7.9 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain RNHCP PF12647.2 gi|257387198|ref|YP_003176971.1| - 0.31 10.8 1.7 0.4 10.5 1.2 1.3 1 1 0 1 1 1 0 RNHCP domain Zn_Tnp_IS91 PF14319.1 gi|257387198|ref|YP_003176971.1| - 0.32 10.5 1.6 0.76 9.3 1.1 1.7 1 1 0 1 1 1 0 Transposase zinc-binding domain Lar_restr_allev PF14354.1 gi|257387198|ref|YP_003176971.1| - 0.56 10.5 2.8 1.2 9.5 1.9 1.5 1 1 0 1 1 1 0 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.5 gi|257387198|ref|YP_003176971.1| - 0.58 10.1 4.3 6.4 6.8 2.8 2.1 1 1 0 1 1 1 0 Zinc ribbon domain zf-RING_3 PF14369.1 gi|257387198|ref|YP_003176971.1| - 0.74 9.8 3.0 3.4 7.7 2.2 1.9 1 1 1 2 2 2 0 zinc-finger Prim_Zn_Ribbon PF08273.7 gi|257387198|ref|YP_003176971.1| - 0.8 9.8 5.1 2.5 8.2 3.5 1.8 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase Zn_Tnp_IS1595 PF12760.2 gi|257387198|ref|YP_003176971.1| - 0.82 9.5 4.3 4.7 7.1 0.1 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain UPF0547 PF10571.4 gi|257387198|ref|YP_003176971.1| - 1 9.1 5.2 12 5.6 0.5 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 GIY-YIG PF01541.19 gi|257387199|ref|YP_003176972.1| - 3.1e-13 49.8 0.1 3.4e-13 49.7 0.1 1.0 1 0 0 1 1 1 1 GIY-YIG catalytic domain T5orf172 PF10544.4 gi|257387199|ref|YP_003176972.1| - 0.0052 17.1 0.2 0.0063 16.8 0.2 1.2 1 0 0 1 1 1 1 T5orf172 domain MUG113 PF13455.1 gi|257387199|ref|YP_003176972.1| - 0.028 14.8 0.2 0.037 14.4 0.2 1.3 1 1 0 1 1 1 0 Meiotically up-regulated gene 113 PGM_PMM_I PF02878.11 gi|257387200|ref|YP_003176973.1| - 1.2e-36 125.2 0.0 2.8e-36 124.0 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|257387200|ref|YP_003176973.1| - 4.6e-26 91.1 0.5 1e-25 90.0 0.4 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.11 gi|257387200|ref|YP_003176973.1| - 1.3e-22 79.9 0.1 2.6e-22 79.0 0.1 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.15 gi|257387200|ref|YP_003176973.1| - 1.9e-14 53.3 0.6 1.1e-13 51.0 0.0 2.4 3 0 0 3 3 3 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain Hydrolase_4 PF12146.3 gi|257387200|ref|YP_003176973.1| - 0.13 12.1 1.2 6 6.7 0.0 2.5 2 0 0 2 2 2 0 Putative lysophospholipase Acetyltransf_10 PF13673.1 gi|257387201|ref|YP_003176974.1| - 3.9e-11 43.0 0.1 4.7e-11 42.8 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|257387201|ref|YP_003176974.1| - 1.4e-08 34.8 0.0 1.8e-08 34.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|257387201|ref|YP_003176974.1| - 2.5e-06 27.4 0.8 9.4e-06 25.5 0.6 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_9 PF13527.1 gi|257387201|ref|YP_003176974.1| - 0.00028 20.7 0.1 0.0084 15.9 0.1 2.2 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|257387201|ref|YP_003176974.1| - 0.011 15.6 0.0 0.018 14.9 0.0 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase DUF3749 PF12568.3 gi|257387201|ref|YP_003176974.1| - 0.016 14.8 1.1 0.02 14.4 0.8 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain GNAT_acetyltr_2 PF13718.1 gi|257387201|ref|YP_003176974.1| - 0.034 13.4 0.0 0.04 13.2 0.0 1.1 1 0 0 1 1 1 0 GNAT acetyltransferase 2 FR47 PF08445.5 gi|257387201|ref|YP_003176974.1| - 0.05 13.3 0.2 0.12 12.0 0.1 1.7 1 1 0 1 1 1 0 FR47-like protein ThiS PF02597.15 gi|257387202|ref|YP_003176975.1| - 0.00031 21.0 0.3 0.00037 20.8 0.2 1.1 1 0 0 1 1 1 1 ThiS family VKOR PF07884.9 gi|257387203|ref|YP_003176976.1| - 0.072 12.9 10.3 0.028 14.2 2.8 2.5 1 1 1 2 2 2 0 Vitamin K epoxide reductase family DUF342 PF03961.8 gi|257387203|ref|YP_003176976.1| - 0.18 10.1 8.9 0.24 9.7 6.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF342) Claudin_2 PF13903.1 gi|257387203|ref|YP_003176976.1| - 0.3 10.7 4.3 0.35 10.5 0.3 2.3 2 0 0 2 2 2 0 PMP-22/EMP/MP20/Claudin tight junction UPF0118 PF01594.11 gi|257387204|ref|YP_003176977.1| - 2.5e-34 118.7 32.6 3.5e-34 118.2 22.6 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF20 Rhodanese PF00581.15 gi|257387205|ref|YP_003176978.1| - 3e-39 133.8 0.0 2e-19 69.9 0.0 2.0 2 0 0 2 2 2 2 Rhodanese-like domain Rhodanese PF00581.15 gi|257387206|ref|YP_003176979.1| - 2.4e-36 124.5 0.3 7e-19 68.2 0.0 2.1 2 0 0 2 2 2 2 Rhodanese-like domain FMN_red PF03358.10 gi|257387208|ref|YP_003176981.1| - 1.2e-32 112.5 0.0 1.4e-32 112.2 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|257387208|ref|YP_003176981.1| - 2.2e-09 37.0 0.0 3.9e-09 36.3 0.0 1.3 1 1 0 1 1 1 1 Flavodoxin-like fold Clp_N PF02861.15 gi|257387209|ref|YP_003176982.1| - 0.05 13.5 0.1 0.3 11.0 0.0 2.2 2 0 0 2 2 2 0 Clp amino terminal domain LEA_4 PF02987.11 gi|257387209|ref|YP_003176982.1| - 0.054 13.3 0.6 0.13 12.1 0.4 1.7 1 0 0 1 1 1 0 Late embryogenesis abundant protein HEAT_2 PF13646.1 gi|257387209|ref|YP_003176982.1| - 0.061 13.6 0.2 0.46 10.7 0.0 2.2 2 1 0 2 2 2 0 HEAT repeats NIPSNAP PF07978.8 gi|257387209|ref|YP_003176982.1| - 0.12 12.3 0.1 0.3 11.0 0.1 1.6 1 0 0 1 1 1 0 NIPSNAP Amidohydro_1 PF01979.15 gi|257387210|ref|YP_003176983.1| - 6.7e-28 98.2 0.0 1.2e-27 97.4 0.0 1.4 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_5 PF13594.1 gi|257387210|ref|YP_003176983.1| - 7.8e-12 44.8 2.4 1.3e-11 44.1 0.2 2.5 3 0 0 3 3 3 1 Amidohydrolase Amidohydro_4 PF13147.1 gi|257387210|ref|YP_003176983.1| - 2.1e-11 44.3 16.8 1.1e-10 42.0 11.7 2.3 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|257387210|ref|YP_003176983.1| - 1e-09 38.1 8.7 8.2e-07 28.5 3.7 2.4 1 1 1 2 2 2 2 Amidohydrolase family D-aminoacyl_C PF07908.7 gi|257387210|ref|YP_003176983.1| - 0.69 9.2 6.7 0.67 9.3 0.4 3.0 3 0 0 3 3 3 0 D-aminoacylase, C-terminal region SpoIIAA-like PF11964.3 gi|257387211|ref|YP_003176984.1| - 1.6e-10 41.2 0.0 2.3e-10 40.7 0.0 1.2 1 0 0 1 1 1 1 SpoIIAA-like DUF106 PF01956.11 gi|257387212|ref|YP_003176985.1| - 6.5e-26 90.8 0.0 8.6e-26 90.4 0.0 1.1 1 0 0 1 1 1 1 Integral membrane protein DUF106 60KD_IMP PF02096.15 gi|257387212|ref|YP_003176985.1| - 0.0027 17.3 0.0 0.0038 16.9 0.0 1.2 1 0 0 1 1 1 1 60Kd inner membrane protein HalX PF08663.5 gi|257387212|ref|YP_003176985.1| - 0.067 13.1 1.9 0.13 12.2 1.3 1.4 1 0 0 1 1 1 0 HalX domain UvrB PF12344.3 gi|257387213|ref|YP_003176986.1| - 3.9e-20 71.0 0.7 9.9e-20 69.8 0.5 1.7 1 0 0 1 1 1 1 Ultra-violet resistance protein B Helicase_C PF00271.26 gi|257387213|ref|YP_003176986.1| - 1.8e-14 53.3 0.0 5.3e-14 51.8 0.0 1.9 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|257387213|ref|YP_003176986.1| - 1e-09 38.4 0.0 1.8e-08 34.4 0.0 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit UVR PF02151.14 gi|257387213|ref|YP_003176986.1| - 3.7e-09 35.8 9.3 1.7e-08 33.7 6.5 2.3 1 0 0 1 1 1 1 UvrB/uvrC motif DEAD PF00270.24 gi|257387213|ref|YP_003176986.1| - 8.6e-05 22.0 0.0 0.0016 17.9 0.0 2.8 2 1 1 3 3 3 1 DEAD/DEAH box helicase UB2H PF14814.1 gi|257387213|ref|YP_003176986.1| - 0.0032 17.1 0.0 0.0082 15.8 0.0 1.7 1 0 0 1 1 1 1 Bifunctional transglycosylase second domain DUF87 PF01935.12 gi|257387213|ref|YP_003176986.1| - 0.034 13.9 0.0 0.12 12.1 0.0 1.9 1 0 0 1 1 1 0 Domain of unknown function DUF87 HD PF01966.17 gi|257387214|ref|YP_003176987.1| - 1.9e-09 37.5 1.1 2.9e-09 36.9 0.7 1.3 1 0 0 1 1 1 1 HD domain Abhydrolase_6 PF12697.2 gi|257387215|ref|YP_003176988.1| - 3.4e-33 115.4 8.4 4e-33 115.2 5.8 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|257387215|ref|YP_003176988.1| - 1.1e-15 57.7 0.1 4.9e-15 55.5 0.0 1.9 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|257387215|ref|YP_003176988.1| - 4.5e-11 42.7 0.1 8.3e-10 38.5 0.1 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_4 PF08386.5 gi|257387215|ref|YP_003176988.1| - 0.00082 19.2 0.2 0.0032 17.3 0.1 1.9 1 1 0 1 1 1 1 TAP-like protein Abhydrolase_2 PF02230.11 gi|257387215|ref|YP_003176988.1| - 0.0028 17.1 0.0 0.82 9.0 0.0 2.9 3 0 0 3 3 3 1 Phospholipase/Carboxylesterase Hydrolase_4 PF12146.3 gi|257387215|ref|YP_003176988.1| - 0.027 14.2 0.2 0.082 12.7 0.0 2.0 2 0 0 2 2 2 0 Putative lysophospholipase Plasmid_stabil PF05016.9 gi|257387216|ref|YP_003176989.1| - 6.3e-05 23.2 0.0 8e-05 22.9 0.0 1.1 1 0 0 1 1 1 1 Plasmid stabilisation system protein Gp49 PF05973.9 gi|257387216|ref|YP_003176989.1| - 0.07 13.1 0.0 0.088 12.8 0.0 1.1 1 0 0 1 1 1 0 Phage derived protein Gp49-like (DUF891) RHH_1 PF01402.16 gi|257387217|ref|YP_003176990.1| - 0.0013 18.5 0.0 0.0036 17.1 0.0 1.8 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family DUF3960 PF13142.1 gi|257387217|ref|YP_003176990.1| - 0.033 13.9 0.0 0.045 13.5 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3960) CsgG PF03783.9 gi|257387217|ref|YP_003176990.1| - 0.12 11.4 0.1 0.13 11.3 0.1 1.0 1 0 0 1 1 1 0 Curli production assembly/transport component CsgG ECH PF00378.15 gi|257387219|ref|YP_003176992.1| - 1.5e-38 132.2 0.5 1.8e-38 132.0 0.3 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family plasmid_Toxin PF12703.2 gi|257387219|ref|YP_003176992.1| - 0.057 13.2 0.0 0.13 12.0 0.0 1.5 1 0 0 1 1 1 0 Toxin of toxin-antitoxin type 1 system DUF3105 PF11303.3 gi|257387220|ref|YP_003176993.1| - 3.4e-28 98.0 0.0 4.4e-28 97.7 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3105) DUF3900 PF13039.1 gi|257387220|ref|YP_003176993.1| - 0.095 12.2 0.0 6.7 6.1 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3900) NAD_synthase PF02540.12 gi|257387221|ref|YP_003176994.1| - 5.1e-73 244.9 0.0 6e-73 244.7 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.11 gi|257387221|ref|YP_003176994.1| - 9.1e-05 21.1 0.0 0.024 13.2 0.0 2.2 2 0 0 2 2 2 2 tRNA methyl transferase HTH_28 PF13518.1 gi|257387221|ref|YP_003176994.1| - 0.042 13.8 0.0 0.21 11.6 0.0 2.2 2 1 1 3 3 3 0 Helix-turn-helix domain QueC PF06508.8 gi|257387221|ref|YP_003176994.1| - 0.044 13.0 0.0 0.15 11.3 0.0 1.9 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC HTH_23 PF13384.1 gi|257387221|ref|YP_003176994.1| - 0.082 12.5 0.1 0.53 10.0 0.0 2.4 3 0 0 3 3 3 0 Homeodomain-like domain Asn_synthase PF00733.16 gi|257387221|ref|YP_003176994.1| - 0.12 11.8 0.2 0.15 11.5 0.1 1.5 1 1 0 1 1 1 0 Asparagine synthase DUF3661 PF12400.3 gi|257387222|ref|YP_003176995.1| - 0.31 11.1 4.1 0.37 10.8 2.9 1.0 1 0 0 1 1 1 0 Vaculolar membrane protein Glyoxalase_2 PF12681.2 gi|257387223|ref|YP_003176996.1| - 3.4e-17 63.0 0.4 3.9e-17 62.8 0.3 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.20 gi|257387223|ref|YP_003176996.1| - 4.8e-15 55.6 0.2 5.6e-15 55.4 0.2 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.1 gi|257387223|ref|YP_003176996.1| - 5.3e-13 48.9 0.6 3e-12 46.5 0.3 2.0 1 1 1 2 2 2 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.1 gi|257387223|ref|YP_003176996.1| - 0.005 16.7 0.3 0.52 10.1 0.2 2.1 1 1 0 1 1 1 1 Glyoxalase-like domain Ldh_1_C PF02866.13 gi|257387223|ref|YP_003176996.1| - 0.075 12.7 0.0 0.087 12.5 0.0 1.1 1 0 0 1 1 1 0 lactate/malate dehydrogenase, alpha/beta C-terminal domain NIF3 PF01784.13 gi|257387223|ref|YP_003176996.1| - 0.15 11.6 0.0 0.2 11.2 0.0 1.1 1 0 0 1 1 1 0 NIF3 (NGG1p interacting factor 3) Aldo_ket_red PF00248.16 gi|257387224|ref|YP_003176997.1| - 1.5e-72 243.8 0.0 1.7e-72 243.6 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family CxxCxxCC PF03692.10 gi|257387225|ref|YP_003176998.1| - 5e-05 23.6 0.1 0.00058 20.2 0.1 2.1 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain CBS PF00571.23 gi|257387226|ref|YP_003176999.1| - 6.6e-20 70.6 3.4 5.2e-10 38.9 0.2 2.9 2 1 0 2 2 2 2 CBS domain Aldo_ket_red PF00248.16 gi|257387227|ref|YP_003177000.1| - 3e-67 226.4 0.0 3.6e-67 226.1 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family NAD_synthase PF02540.12 gi|257387228|ref|YP_003177001.1| - 7.4e-52 175.6 0.0 8.5e-52 175.4 0.0 1.0 1 0 0 1 1 1 1 NAD synthase HTH_23 PF13384.1 gi|257387228|ref|YP_003177001.1| - 0.002 17.7 0.5 0.013 15.1 0.1 2.5 2 1 1 3 3 3 1 Homeodomain-like domain HrcA_DNA-bdg PF03444.10 gi|257387229|ref|YP_003177002.1| - 3.2e-21 74.5 0.0 4.6e-21 74.0 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_11 PF08279.7 gi|257387229|ref|YP_003177002.1| - 3.2e-06 26.6 0.0 5.6e-06 25.9 0.0 1.4 1 0 0 1 1 1 1 HTH domain Rrf2 PF02082.15 gi|257387229|ref|YP_003177002.1| - 3.3e-06 27.1 0.0 6.6e-06 26.1 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator HTH_20 PF12840.2 gi|257387229|ref|YP_003177002.1| - 8.5e-06 25.4 0.0 2.2e-05 24.1 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|257387229|ref|YP_003177002.1| - 0.00016 21.3 0.0 0.00028 20.5 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|257387229|ref|YP_003177002.1| - 0.0002 20.9 0.0 0.00054 19.5 0.0 1.8 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|257387229|ref|YP_003177002.1| - 0.0013 19.0 0.1 0.0033 17.7 0.0 1.8 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|257387229|ref|YP_003177002.1| - 0.0047 16.5 0.1 0.012 15.2 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.5 gi|257387229|ref|YP_003177002.1| - 0.0074 15.8 0.1 0.016 14.7 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain Propeptide_C25 PF08126.6 gi|257387229|ref|YP_003177002.1| - 0.0094 14.9 0.0 0.014 14.3 0.0 1.3 1 0 0 1 1 1 1 Propeptide_C25 Fe_dep_repress PF01325.14 gi|257387229|ref|YP_003177002.1| - 0.015 15.2 0.0 0.033 14.1 0.0 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain MarR PF01047.17 gi|257387229|ref|YP_003177002.1| - 0.083 12.6 0.1 0.2 11.4 0.1 1.7 1 1 0 1 1 1 0 MarR family Phage_rep_org_N PF09681.5 gi|257387229|ref|YP_003177002.1| - 0.1 12.1 0.0 0.18 11.3 0.0 1.3 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) HTH_41 PF14502.1 gi|257387229|ref|YP_003177002.1| - 0.12 11.9 0.1 0.32 10.6 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_15 PF12324.3 gi|257387229|ref|YP_003177002.1| - 0.55 9.9 2.7 0.79 9.4 0.2 2.3 3 0 0 3 3 2 0 Helix-turn-helix domain of alkylmercury lyase Ribosomal_S24e PF01282.14 gi|257387231|ref|YP_003177004.1| - 1.3e-28 98.5 0.4 1.6e-28 98.3 0.3 1.1 1 0 0 1 1 1 1 Ribosomal protein S24e Ribosomal_S27 PF01599.14 gi|257387232|ref|YP_003177005.1| - 1.7e-13 50.1 4.7 2e-13 49.9 3.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S27a FYVE PF01363.16 gi|257387232|ref|YP_003177005.1| - 0.00065 19.5 1.0 0.00076 19.3 0.7 1.1 1 0 0 1 1 1 1 FYVE zinc finger RNA_POL_M_15KD PF02150.11 gi|257387232|ref|YP_003177005.1| - 0.0014 18.2 1.2 0.0021 17.7 0.9 1.2 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit Ribosomal_L37e PF01907.14 gi|257387232|ref|YP_003177005.1| - 0.0026 17.5 0.7 0.0032 17.2 0.5 1.2 1 0 0 1 1 1 1 Ribosomal protein L37e Prok-RING_1 PF14446.1 gi|257387232|ref|YP_003177005.1| - 0.0038 16.9 1.1 0.0049 16.5 0.7 1.2 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 DZR PF12773.2 gi|257387232|ref|YP_003177005.1| - 0.0046 16.7 1.2 0.006 16.3 0.8 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|257387232|ref|YP_003177005.1| - 0.0093 15.4 2.5 1.8 8.1 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain IBR PF01485.16 gi|257387232|ref|YP_003177005.1| - 0.024 14.4 0.9 0.025 14.4 0.6 1.1 1 0 0 1 1 1 0 IBR domain FYVE_2 PF02318.11 gi|257387232|ref|YP_003177005.1| - 0.038 13.8 0.1 0.041 13.7 0.1 1.0 1 0 0 1 1 1 0 FYVE-type zinc finger HypA PF01155.14 gi|257387232|ref|YP_003177005.1| - 0.038 13.6 1.4 0.041 13.5 1.0 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zinc-ribbons_6 PF07191.7 gi|257387232|ref|YP_003177005.1| - 0.058 13.1 1.5 0.075 12.8 1.0 1.1 1 0 0 1 1 1 0 zinc-ribbons NCD3G PF07562.9 gi|257387232|ref|YP_003177005.1| - 0.061 13.0 1.3 0.07 12.8 0.9 1.2 1 0 0 1 1 1 0 Nine Cysteines Domain of family 3 GPCR zf-ribbon_3 PF13248.1 gi|257387232|ref|YP_003177005.1| - 0.062 12.5 5.2 0.18 11.0 3.6 1.7 1 1 0 1 1 1 0 zinc-ribbon domain zf-RING_3 PF14369.1 gi|257387232|ref|YP_003177005.1| - 0.072 13.0 0.4 0.072 13.0 0.3 1.8 1 1 1 2 2 2 0 zinc-finger zinc_ribbon_5 PF13719.1 gi|257387232|ref|YP_003177005.1| - 0.082 12.5 2.4 0.63 9.6 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-CSL PF05207.8 gi|257387232|ref|YP_003177005.1| - 0.084 12.3 4.0 0.14 11.7 2.7 1.4 1 1 0 1 1 1 0 CSL zinc finger GFA PF04828.9 gi|257387232|ref|YP_003177005.1| - 0.096 12.6 2.3 0.23 11.4 0.1 1.9 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme Mcm10 PF09332.6 gi|257387232|ref|YP_003177005.1| - 0.1 11.9 1.1 0.1 11.9 0.8 1.0 1 0 0 1 1 1 0 Mcm10 replication factor zinc_ribbon_4 PF13717.1 gi|257387232|ref|YP_003177005.1| - 0.1 12.2 2.4 0.79 9.4 0.0 2.2 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|257387232|ref|YP_003177005.1| - 0.11 11.8 4.8 0.15 11.4 2.8 1.7 1 1 0 1 1 1 0 TFIIB zinc-binding FlhC PF05280.6 gi|257387232|ref|YP_003177005.1| - 0.12 11.8 0.1 0.12 11.7 0.1 1.0 1 0 0 1 1 1 0 Flagellar transcriptional activator (FlhC) OrfB_Zn_ribbon PF07282.6 gi|257387232|ref|YP_003177005.1| - 0.13 11.9 2.4 0.18 11.4 1.7 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Spt4 PF06093.8 gi|257387232|ref|YP_003177005.1| - 0.14 12.0 0.3 0.14 12.0 0.2 1.1 1 0 0 1 1 1 0 Spt4/RpoE2 zinc finger DNA_RNApol_7kD PF03604.8 gi|257387232|ref|YP_003177005.1| - 0.14 11.6 2.4 0.19 11.2 1.6 1.2 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit DUF2082 PF09855.4 gi|257387232|ref|YP_003177005.1| - 0.2 11.5 3.0 3.1 7.6 0.3 2.2 1 1 1 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) A2L_zn_ribbon PF08792.5 gi|257387232|ref|YP_003177005.1| - 0.26 10.7 5.4 4.5 6.8 0.3 2.4 1 1 1 2 2 2 0 A2L zinc ribbon domain TFIIS_C PF01096.13 gi|257387232|ref|YP_003177005.1| - 0.39 10.3 2.3 7 6.3 0.0 2.1 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) Nudix_N_2 PF14803.1 gi|257387232|ref|YP_003177005.1| - 0.4 10.4 8.1 11 5.8 0.7 2.1 1 1 1 2 2 2 0 Nudix N-terminal Auto_anti-p27 PF06677.7 gi|257387232|ref|YP_003177005.1| - 0.41 10.4 5.1 1.4 8.7 3.7 1.7 1 1 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) RNHCP PF12647.2 gi|257387232|ref|YP_003177005.1| - 0.45 10.3 3.7 0.8 9.5 2.5 1.4 1 1 1 2 2 2 0 RNHCP domain FeS PF04060.8 gi|257387232|ref|YP_003177005.1| - 0.54 9.8 4.3 0.6 9.7 0.5 2.1 2 0 0 2 2 2 0 Putative Fe-S cluster zf-C2HC_2 PF13913.1 gi|257387232|ref|YP_003177005.1| - 0.55 9.9 0.2 0.55 9.9 0.1 2.3 2 0 0 2 2 2 0 zinc-finger of a C2HC-type Zn-ribbon_8 PF09723.5 gi|257387232|ref|YP_003177005.1| - 0.82 9.6 6.2 2.5 8.1 0.6 2.1 1 1 1 2 2 2 0 Zinc ribbon domain RRN7 PF11781.3 gi|257387232|ref|YP_003177005.1| - 1.2 8.6 8.7 22 4.6 0.1 3.0 1 1 2 3 3 3 0 RNA polymerase I-specific transcription initiation factor Rrn7 zf-H2C2_2 PF13465.1 gi|257387232|ref|YP_003177005.1| - 1.3 9.4 5.1 4.5 7.7 0.3 2.4 2 1 0 2 2 2 0 Zinc-finger double domain Fer4_6 PF12837.2 gi|257387232|ref|YP_003177005.1| - 1.8 8.5 5.0 4.3 7.3 0.3 2.1 2 0 0 2 2 2 0 4Fe-4S binding domain NOB1_Zn_bind PF08772.6 gi|257387232|ref|YP_003177005.1| - 2.6 7.9 4.8 8.6 6.2 0.1 2.0 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-TFIIB PF13453.1 gi|257387232|ref|YP_003177005.1| - 2.7 7.2 5.8 0.34 10.1 0.3 2.0 1 1 1 2 2 2 0 Transcription factor zinc-finger zf-C2H2_3 PF13878.1 gi|257387232|ref|YP_003177005.1| - 2.9 7.5 5.7 9 5.9 0.1 2.2 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO zf-tcix PF14952.1 gi|257387232|ref|YP_003177005.1| - 4.1 6.8 6.0 6.5 6.1 0.1 2.1 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding YhfH PF14149.1 gi|257387232|ref|YP_003177005.1| - 4.6 7.1 7.6 6 6.7 0.1 2.2 1 1 1 2 2 2 0 YhfH-like protein zf-ISL3 PF14690.1 gi|257387232|ref|YP_003177005.1| - 6.6 6.8 6.7 1.9 8.5 0.3 2.1 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Peptidase_M22 PF00814.20 gi|257387233|ref|YP_003177006.1| - 1.8e-70 237.5 0.0 2.4e-70 237.0 0.0 1.1 1 0 0 1 1 1 1 Glycoprotease family Kdo PF06293.9 gi|257387233|ref|YP_003177006.1| - 6.5e-05 22.0 0.1 0.00031 19.8 0.0 1.9 2 0 0 2 2 2 1 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.18 gi|257387233|ref|YP_003177006.1| - 0.0049 16.6 13.8 0.11 12.2 0.6 2.5 1 1 1 2 2 2 2 Phosphotransferase enzyme family Usp PF00582.21 gi|257387234|ref|YP_003177007.1| - 6.2e-08 32.9 3.7 3.7e-07 30.4 2.6 1.9 1 1 0 1 1 1 1 Universal stress protein family CopC PF04234.7 gi|257387234|ref|YP_003177007.1| - 0.12 13.0 0.0 1.3 9.7 0.0 2.1 2 0 0 2 2 2 0 CopC domain ETF PF01012.16 gi|257387234|ref|YP_003177007.1| - 1.2 8.8 5.5 3.6 7.2 2.2 2.0 1 1 1 2 2 2 0 Electron transfer flavoprotein domain Ham1p_like PF01725.11 gi|257387236|ref|YP_003177009.1| - 8.5e-46 155.7 0.0 2.7e-45 154.0 0.0 1.7 1 1 0 1 1 1 1 Ham1 family Keratin_B2 PF01500.12 gi|257387237|ref|YP_003177010.1| - 0.022 14.5 5.3 0.027 14.2 3.7 1.2 1 0 0 1 1 1 0 Keratin, high sulfur B2 protein adh_short PF00106.20 gi|257387238|ref|YP_003177011.1| - 2.7e-35 121.7 4.5 3.3e-35 121.4 3.1 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|257387238|ref|YP_003177011.1| - 8.2e-19 67.9 1.7 1.1e-18 67.6 1.2 1.1 1 0 0 1 1 1 1 KR domain adh_short_C2 PF13561.1 gi|257387238|ref|YP_003177011.1| - 5.3e-07 29.6 0.0 7.3e-07 29.2 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase HEM4 PF02602.10 gi|257387238|ref|YP_003177011.1| - 1.3e-05 24.5 0.8 0.00016 20.9 0.6 2.0 1 1 0 1 1 1 1 Uroporphyrinogen-III synthase HemD NAD_binding_10 PF13460.1 gi|257387238|ref|YP_003177011.1| - 6e-05 23.1 1.4 0.00071 19.6 1.0 2.2 1 1 0 1 1 1 1 NADH(P)-binding Glyco_trans_4_4 PF13579.1 gi|257387238|ref|YP_003177011.1| - 0.00054 20.1 11.8 0.38 10.8 0.2 3.2 2 1 0 2 2 2 2 Glycosyl transferase 4-like domain Epimerase PF01370.16 gi|257387238|ref|YP_003177011.1| - 0.00083 18.8 0.4 0.0014 18.1 0.3 1.5 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family F420_oxidored PF03807.12 gi|257387238|ref|YP_003177011.1| - 0.0012 19.1 0.1 0.0024 18.2 0.1 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Saccharop_dh PF03435.13 gi|257387238|ref|YP_003177011.1| - 0.0042 16.1 0.1 0.0048 15.9 0.1 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase Eno-Rase_NADH_b PF12242.3 gi|257387238|ref|YP_003177011.1| - 0.005 16.5 0.1 0.012 15.4 0.1 1.5 1 0 0 1 1 1 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase ApbA PF02558.11 gi|257387238|ref|YP_003177011.1| - 0.059 12.8 0.1 0.097 12.1 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NmrA PF05368.8 gi|257387238|ref|YP_003177011.1| - 0.067 12.4 0.1 0.15 11.3 0.1 1.5 2 0 0 2 2 2 0 NmrA-like family 3HCDH_N PF02737.13 gi|257387238|ref|YP_003177011.1| - 0.078 12.6 0.1 0.12 12.0 0.0 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PIN_3 PF13470.1 gi|257387239|ref|YP_003177012.1| - 2.1e-05 25.1 3.2 6.6e-05 23.5 2.2 1.7 1 1 0 1 1 1 1 PIN domain Lactamase_B PF00753.22 gi|257387241|ref|YP_003177014.1| - 1.4e-16 60.7 12.5 2e-16 60.2 8.7 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|257387241|ref|YP_003177014.1| - 0.0012 18.3 1.2 0.0024 17.4 0.8 1.6 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|257387241|ref|YP_003177014.1| - 0.024 14.3 2.7 0.034 13.8 1.9 1.4 1 1 0 1 1 1 0 Beta-lactamase superfamily domain Tom22 PF04281.8 gi|257387242|ref|YP_003177015.1| - 0.28 10.7 3.5 0.34 10.4 2.4 1.1 1 0 0 1 1 1 0 Mitochondrial import receptor subunit Tom22 GvpG PF05120.7 gi|257387242|ref|YP_003177015.1| - 0.64 9.8 2.5 1.4 8.7 1.7 1.7 1 1 0 1 1 1 0 Gas vesicle protein G DUF99 PF01949.11 gi|257387243|ref|YP_003177016.1| - 3.8e-52 176.1 0.0 4.3e-52 175.9 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 TrkA_N PF02254.13 gi|257387244|ref|YP_003177017.1| - 4.4e-25 87.9 0.4 6.3e-25 87.4 0.3 1.2 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|257387244|ref|YP_003177017.1| - 5.5e-13 48.3 0.1 9.4e-13 47.5 0.1 1.4 1 0 0 1 1 1 1 TrkA-C domain Saccharop_dh PF03435.13 gi|257387244|ref|YP_003177017.1| - 0.00032 19.8 0.1 0.00039 19.5 0.0 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase NAD_binding_7 PF13241.1 gi|257387244|ref|YP_003177017.1| - 0.00034 20.8 0.1 0.00055 20.1 0.0 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding NAD_binding_10 PF13460.1 gi|257387244|ref|YP_003177017.1| - 0.00073 19.5 0.2 0.0011 18.9 0.1 1.3 1 0 0 1 1 1 1 NADH(P)-binding UDPG_MGDP_dh_N PF03721.9 gi|257387244|ref|YP_003177017.1| - 0.0011 18.4 0.0 0.0023 17.3 0.0 1.6 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AdoHcyase_NAD PF00670.16 gi|257387244|ref|YP_003177017.1| - 0.0021 17.9 0.1 0.0031 17.3 0.0 1.3 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|257387244|ref|YP_003177017.1| - 0.0067 15.5 0.0 0.01 14.9 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.13 gi|257387244|ref|YP_003177017.1| - 0.018 14.6 0.1 0.027 14.1 0.1 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.11 gi|257387244|ref|YP_003177017.1| - 0.021 14.2 0.0 0.032 13.6 0.0 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NmrA PF05368.8 gi|257387244|ref|YP_003177017.1| - 0.024 13.9 0.1 0.047 12.9 0.1 1.4 1 1 0 1 1 1 0 NmrA-like family XdhC_C PF13478.1 gi|257387244|ref|YP_003177017.1| - 0.033 14.5 0.0 0.058 13.7 0.0 1.5 1 0 0 1 1 1 0 XdhC Rossmann domain AlaDh_PNT_C PF01262.16 gi|257387244|ref|YP_003177017.1| - 0.034 13.7 0.1 0.051 13.1 0.0 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain IlvN PF07991.7 gi|257387244|ref|YP_003177017.1| - 0.036 13.4 0.0 0.066 12.5 0.0 1.5 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain NAD_binding_2 PF03446.10 gi|257387244|ref|YP_003177017.1| - 0.041 13.7 0.0 0.12 12.1 0.0 1.8 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase DAO PF01266.19 gi|257387244|ref|YP_003177017.1| - 0.055 12.3 0.1 0.082 11.7 0.0 1.4 1 0 0 1 1 1 0 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|257387244|ref|YP_003177017.1| - 0.059 12.4 0.0 0.071 12.1 0.0 1.2 1 0 0 1 1 1 0 FAD binding domain Gp_dh_N PF00044.19 gi|257387244|ref|YP_003177017.1| - 0.1 12.5 0.0 0.15 12.0 0.0 1.3 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CPSase_L_chain PF00289.17 gi|257387244|ref|YP_003177017.1| - 0.11 12.6 0.0 0.17 11.9 0.0 1.3 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, N-terminal domain Rad51 PF08423.6 gi|257387245|ref|YP_003177018.1| - 6e-83 277.6 0.3 4.6e-50 169.9 0.0 2.0 2 0 0 2 2 2 2 Rad51 HHH_5 PF14520.1 gi|257387245|ref|YP_003177018.1| - 1.2e-10 41.3 0.1 4.9e-10 39.4 0.1 2.0 1 0 0 1 1 1 1 Helix-hairpin-helix domain AAA_25 PF13481.1 gi|257387245|ref|YP_003177018.1| - 4e-07 29.6 0.4 6.2e-07 29.0 0.3 1.4 1 0 0 1 1 1 1 AAA domain RecA PF00154.16 gi|257387245|ref|YP_003177018.1| - 5e-07 29.0 0.1 0.018 14.0 0.0 2.1 2 0 0 2 2 2 2 recA bacterial DNA recombination protein HHH PF00633.18 gi|257387245|ref|YP_003177018.1| - 2.5e-06 26.8 0.3 0.00023 20.6 0.0 2.8 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_2 PF12826.2 gi|257387245|ref|YP_003177018.1| - 0.0016 18.2 0.0 0.0068 16.2 0.0 2.1 1 1 1 2 2 2 1 Helix-hairpin-helix motif KaiC PF06745.8 gi|257387245|ref|YP_003177018.1| - 0.0034 16.5 0.5 0.0071 15.4 0.3 1.5 1 1 0 1 1 1 1 KaiC IMS_HHH PF11798.3 gi|257387245|ref|YP_003177018.1| - 0.0048 16.8 0.0 0.018 15.0 0.0 2.0 2 0 0 2 2 2 1 IMS family HHH motif Cdd1 PF11731.3 gi|257387245|ref|YP_003177018.1| - 0.013 15.3 0.0 0.036 13.9 0.0 1.8 2 0 0 2 2 2 0 Pathogenicity locus HHH_3 PF12836.2 gi|257387245|ref|YP_003177018.1| - 0.046 13.6 0.0 2.1 8.3 0.0 2.5 2 0 0 2 2 2 0 Helix-hairpin-helix motif HHH_8 PF14716.1 gi|257387245|ref|YP_003177018.1| - 0.091 12.9 0.0 0.47 10.6 0.0 2.2 2 0 0 2 2 2 0 Helix-hairpin-helix domain RE_HindIII PF09518.5 gi|257387245|ref|YP_003177018.1| - 0.16 10.8 0.1 0.24 10.2 0.1 1.2 1 0 0 1 1 1 0 HindIII restriction endonuclease Abhydrolase_5 PF12695.2 gi|257387246|ref|YP_003177019.1| - 5.6e-13 48.8 1.0 1e-12 48.0 0.3 1.8 2 0 0 2 2 2 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|257387246|ref|YP_003177019.1| - 7.3e-11 42.3 0.7 7.3e-11 42.3 0.5 1.7 2 0 0 2 2 2 1 Alpha/beta hydrolase family AXE1 PF05448.7 gi|257387246|ref|YP_003177019.1| - 2e-06 26.5 0.1 0.00037 19.1 0.0 2.2 2 0 0 2 2 2 2 Acetyl xylan esterase (AXE1) Hydrolase_4 PF12146.3 gi|257387246|ref|YP_003177019.1| - 9.9e-06 25.3 0.0 2.2e-05 24.2 0.0 1.6 1 0 0 1 1 1 1 Putative lysophospholipase Peptidase_S15 PF02129.13 gi|257387246|ref|YP_003177019.1| - 8e-05 22.1 1.8 0.096 12.0 0.0 3.0 3 0 0 3 3 3 2 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_1 PF00561.15 gi|257387246|ref|YP_003177019.1| - 0.0029 17.2 0.3 0.0067 16.0 0.2 1.6 1 1 0 1 1 1 1 alpha/beta hydrolase fold Peptidase_S9 PF00326.16 gi|257387246|ref|YP_003177019.1| - 0.0042 16.3 0.6 0.016 14.4 0.2 1.9 2 0 0 2 2 2 1 Prolyl oligopeptidase family PAF-AH_p_II PF03403.8 gi|257387246|ref|YP_003177019.1| - 0.011 14.0 0.0 0.087 11.0 0.0 2.0 2 0 0 2 2 2 0 Platelet-activating factor acetylhydrolase, isoform II Esterase PF00756.15 gi|257387246|ref|YP_003177019.1| - 0.038 13.4 0.1 0.098 12.0 0.1 1.6 2 0 0 2 2 2 0 Putative esterase UPF0182 PF03699.8 gi|257387246|ref|YP_003177019.1| - 7.2 4.4 4.9 11 3.8 3.4 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0182) SBP_bac_5 PF00496.17 gi|257387249|ref|YP_003177022.1| - 7.1e-46 156.7 2.9 9.6e-46 156.2 2.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle DUF4357 PF14267.1 gi|257387249|ref|YP_003177022.1| - 0.0043 16.6 0.1 0.011 15.3 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4357) TAT_signal PF10518.4 gi|257387249|ref|YP_003177022.1| - 0.25 11.4 6.3 0.48 10.5 4.3 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_1 PF00528.17 gi|257387250|ref|YP_003177023.1| - 1.3e-34 119.3 11.4 1.3e-34 119.3 7.9 1.8 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF4349 PF14257.1 gi|257387250|ref|YP_003177023.1| - 0.047 12.9 0.1 0.047 12.9 0.1 2.8 4 0 0 4 4 4 0 Domain of unknown function (DUF4349) DUF2975 PF11188.3 gi|257387250|ref|YP_003177023.1| - 0.34 10.6 12.4 0.018 14.7 1.5 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2975) PalH PF08733.5 gi|257387250|ref|YP_003177023.1| - 6.9 5.4 9.7 0.95 8.2 1.5 2.1 2 0 0 2 2 2 0 PalH/RIM21 BPD_transp_1 PF00528.17 gi|257387251|ref|YP_003177024.1| - 8.3e-26 90.6 6.7 8.3e-26 90.6 4.6 2.0 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|257387251|ref|YP_003177024.1| - 0.038 13.3 0.5 0.33 10.3 0.1 2.5 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C ABC_tran PF00005.22 gi|257387252|ref|YP_003177025.1| - 1.1e-21 77.5 0.0 1.7e-21 76.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|257387252|ref|YP_003177025.1| - 2.2e-19 69.5 0.4 4.7e-19 68.5 0.3 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|257387252|ref|YP_003177025.1| - 1.6e-10 41.4 1.5 3.4e-09 37.0 0.1 2.1 1 1 0 2 2 2 1 AAA domain SMC_N PF02463.14 gi|257387252|ref|YP_003177025.1| - 1.1e-05 24.7 0.3 0.028 13.6 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|257387252|ref|YP_003177025.1| - 4.1e-05 23.7 0.2 0.0018 18.3 0.1 2.2 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|257387252|ref|YP_003177025.1| - 0.0016 18.4 0.2 0.0036 17.2 0.1 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_10 PF12846.2 gi|257387252|ref|YP_003177025.1| - 0.0022 17.4 0.1 0.054 12.9 0.0 2.1 1 1 1 2 2 2 1 AAA-like domain ABC_ATPase PF09818.4 gi|257387252|ref|YP_003177025.1| - 0.0024 16.5 0.0 0.0069 15.0 0.0 1.6 1 1 0 1 1 1 1 Predicted ATPase of the ABC class AAA_25 PF13481.1 gi|257387252|ref|YP_003177025.1| - 0.0048 16.3 0.0 0.047 13.0 0.0 2.1 2 0 0 2 2 2 1 AAA domain DUF87 PF01935.12 gi|257387252|ref|YP_003177025.1| - 0.018 14.9 0.1 0.05 13.4 0.1 1.7 1 1 1 2 2 2 0 Domain of unknown function DUF87 AAA_29 PF13555.1 gi|257387252|ref|YP_003177025.1| - 0.019 14.4 0.0 0.038 13.5 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|257387252|ref|YP_003177025.1| - 0.02 13.9 0.1 0.11 11.4 0.0 1.8 2 0 0 2 2 2 0 AAA ATPase domain NACHT PF05729.7 gi|257387252|ref|YP_003177025.1| - 0.03 13.9 0.0 0.064 12.9 0.0 1.5 1 0 0 1 1 1 0 NACHT domain T2SE PF00437.15 gi|257387252|ref|YP_003177025.1| - 0.075 11.9 0.0 0.13 11.1 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein FtsK_SpoIIIE PF01580.13 gi|257387252|ref|YP_003177025.1| - 0.08 12.4 0.0 0.14 11.5 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family ArgK PF03308.11 gi|257387252|ref|YP_003177025.1| - 0.15 10.8 0.0 0.22 10.2 0.0 1.2 1 0 0 1 1 1 0 ArgK protein Mg_chelatase PF01078.16 gi|257387252|ref|YP_003177025.1| - 0.16 11.1 0.0 0.36 9.9 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI IstB_IS21 PF01695.12 gi|257387252|ref|YP_003177025.1| - 0.16 11.3 0.1 1.5 8.2 0.0 2.0 2 0 0 2 2 2 0 IstB-like ATP binding protein Sigma54_activat PF00158.21 gi|257387252|ref|YP_003177025.1| - 0.16 11.3 0.1 0.68 9.3 0.0 1.8 2 0 0 2 2 2 0 Sigma-54 interaction domain ABC_tran PF00005.22 gi|257387253|ref|YP_003177026.1| - 1.3e-28 99.9 0.0 1.9e-28 99.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|257387253|ref|YP_003177026.1| - 2.1e-13 50.4 0.3 3.9e-13 49.5 0.2 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|257387253|ref|YP_003177026.1| - 4.4e-06 26.8 0.1 0.0022 18.0 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_22 PF13401.1 gi|257387253|ref|YP_003177026.1| - 0.00086 19.4 1.7 0.015 15.4 1.1 2.3 1 1 0 1 1 1 1 AAA domain PduV-EutP PF10662.4 gi|257387253|ref|YP_003177026.1| - 0.0053 16.2 0.0 0.0089 15.5 0.0 1.3 1 0 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation AAA_16 PF13191.1 gi|257387253|ref|YP_003177026.1| - 0.047 13.6 0.5 0.14 12.1 0.2 1.9 1 1 0 1 1 1 0 AAA ATPase domain NB-ARC PF00931.17 gi|257387253|ref|YP_003177026.1| - 0.053 12.3 0.1 0.088 11.6 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain KaiC PF06745.8 gi|257387253|ref|YP_003177026.1| - 0.063 12.3 0.0 0.13 11.4 0.0 1.5 1 0 0 1 1 1 0 KaiC AAA_10 PF12846.2 gi|257387253|ref|YP_003177026.1| - 0.075 12.4 0.0 0.37 10.1 0.0 1.8 1 1 1 2 2 2 0 AAA-like domain AAA_29 PF13555.1 gi|257387253|ref|YP_003177026.1| - 0.087 12.3 0.1 0.18 11.3 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_33 PF13671.1 gi|257387253|ref|YP_003177026.1| - 0.12 12.1 0.2 0.57 10.0 0.2 2.0 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|257387253|ref|YP_003177026.1| - 0.15 11.5 0.2 0.44 10.1 0.1 1.7 2 0 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|257387253|ref|YP_003177026.1| - 0.17 11.5 0.2 0.31 10.6 0.2 1.4 1 0 0 1 1 1 0 NACHT domain DUF1129 PF06570.6 gi|257387254|ref|YP_003177027.1| - 0.026 13.8 0.4 0.028 13.7 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) DUF2069 PF09842.4 gi|257387254|ref|YP_003177027.1| - 0.034 14.0 1.1 0.039 13.9 0.7 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2069) IncA PF04156.9 gi|257387254|ref|YP_003177027.1| - 0.077 12.5 0.3 0.08 12.5 0.2 1.0 1 0 0 1 1 1 0 IncA protein TMEM173 PF15009.1 gi|257387254|ref|YP_003177027.1| - 0.16 10.7 0.3 0.19 10.4 0.2 1.0 1 0 0 1 1 1 0 Transmembrane protein 173 VIT1 PF01988.14 gi|257387254|ref|YP_003177027.1| - 1 8.8 4.4 1.1 8.7 3.1 1.1 1 0 0 1 1 1 0 VIT family Adaptin_N PF01602.15 gi|257387255|ref|YP_003177028.1| - 2.4e-10 39.3 0.4 1.4e-09 36.8 0.3 1.8 1 1 0 1 1 1 1 Adaptin N terminal region HEAT_2 PF13646.1 gi|257387255|ref|YP_003177028.1| - 9.9e-10 38.5 16.0 1.4e-05 25.2 1.5 3.4 2 2 1 3 3 3 2 HEAT repeats HEAT_EZ PF13513.1 gi|257387255|ref|YP_003177028.1| - 1.8e-06 28.2 20.3 0.016 15.6 0.2 5.0 5 2 2 7 7 7 3 HEAT-like repeat Arm PF00514.18 gi|257387255|ref|YP_003177028.1| - 2e-06 27.4 6.4 0.0017 18.1 0.0 4.6 4 0 0 4 4 4 1 Armadillo/beta-catenin-like repeat Cnd1 PF12717.2 gi|257387255|ref|YP_003177028.1| - 0.00085 19.2 0.0 0.037 13.8 0.0 3.0 1 1 3 4 4 4 1 non-SMC mitotic condensation complex subunit 1 HEAT PF02985.17 gi|257387255|ref|YP_003177028.1| - 0.024 14.6 3.4 28 5.1 0.0 4.5 4 0 0 4 4 4 0 HEAT repeat HEAT_PBS PF03130.11 gi|257387255|ref|YP_003177028.1| - 0.18 12.3 0.1 0.18 12.3 0.1 4.6 6 0 0 6 6 6 0 PBS lyase HEAT-like repeat Gag_p12 PF01141.13 gi|257387255|ref|YP_003177028.1| - 0.19 11.9 1.6 0.52 10.4 0.1 2.5 3 0 0 3 3 3 0 Gag polyprotein, inner coat protein p12 Peptidase_M48 PF01435.13 gi|257387256|ref|YP_003177029.1| - 1.2e-41 142.7 0.2 7.6e-41 140.1 0.0 1.9 1 1 1 2 2 2 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|257387256|ref|YP_003177029.1| - 6.8e-08 31.8 2.3 5.3e-07 28.9 0.0 2.3 2 1 0 2 2 2 1 BlaR1 peptidase M56 Tic20 PF09685.5 gi|257387256|ref|YP_003177029.1| - 0.11 12.4 6.6 1.5 8.8 0.5 2.2 2 0 0 2 2 2 0 Tic20-like protein Peptidase_MA_2 PF13485.1 gi|257387256|ref|YP_003177029.1| - 0.12 12.4 0.0 0.23 11.4 0.0 1.5 1 0 0 1 1 1 0 Peptidase MA superfamily SprT-like PF10263.4 gi|257387256|ref|YP_003177029.1| - 0.14 11.8 0.0 0.2 11.3 0.0 1.2 1 0 0 1 1 1 0 SprT-like family DUF2207 PF09972.4 gi|257387256|ref|YP_003177029.1| - 0.32 9.5 2.4 4 5.9 0.0 2.0 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) TPT PF03151.11 gi|257387256|ref|YP_003177029.1| - 0.72 9.4 9.4 1.6 8.4 0.2 2.4 2 1 0 2 2 2 0 Triose-phosphate Transporter family 2TM PF13239.1 gi|257387256|ref|YP_003177029.1| - 1.5 8.9 5.3 0.47 10.5 0.2 2.2 2 0 0 2 2 2 0 2TM domain ATP_synt_I PF03899.10 gi|257387256|ref|YP_003177029.1| - 1.8 8.7 13.1 0.58 10.3 2.6 2.5 2 0 0 2 2 2 0 ATP synthase I chain TspO_MBR PF03073.10 gi|257387257|ref|YP_003177030.1| - 6.4e-42 142.5 18.5 7.9e-42 142.2 12.8 1.1 1 0 0 1 1 1 1 TspO/MBR family DUF3154 PF11351.3 gi|257387257|ref|YP_003177030.1| - 2.3 7.9 13.8 0.27 10.9 4.5 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3154) NMD3 PF04981.8 gi|257387258|ref|YP_003177031.1| - 1.2e-68 230.8 0.5 1.4e-68 230.5 0.3 1.1 1 0 0 1 1 1 1 NMD3 family zinc_ribbon_2 PF13240.1 gi|257387258|ref|YP_003177031.1| - 0.00085 18.7 4.4 0.2 11.1 0.1 3.4 3 0 0 3 3 3 1 zinc-ribbon domain GFA PF04828.9 gi|257387258|ref|YP_003177031.1| - 0.0015 18.4 0.6 1.2 9.1 0.0 3.1 3 0 0 3 3 3 1 Glutathione-dependent formaldehyde-activating enzyme zf-ribbon_3 PF13248.1 gi|257387258|ref|YP_003177031.1| - 0.0016 17.5 3.7 1.6 8.0 0.1 3.4 3 0 0 3 3 3 1 zinc-ribbon domain DZR PF12773.2 gi|257387258|ref|YP_003177031.1| - 0.0071 16.1 5.7 0.37 10.6 2.7 3.1 2 1 0 2 2 2 1 Double zinc ribbon FYVE PF01363.16 gi|257387258|ref|YP_003177031.1| - 0.0083 15.9 1.4 0.4 10.6 0.8 2.3 2 0 0 2 2 2 1 FYVE zinc finger DUF2147 PF09917.4 gi|257387258|ref|YP_003177031.1| - 0.038 14.2 0.1 1.1 9.5 0.1 2.9 2 1 1 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2147) Rpr2 PF04032.11 gi|257387258|ref|YP_003177031.1| - 0.074 12.9 0.1 1.5 8.7 0.0 2.6 3 0 0 3 3 2 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain DUF3795 PF12675.2 gi|257387258|ref|YP_003177031.1| - 0.11 12.6 0.6 0.45 10.7 0.2 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF3795) Nudix_N_2 PF14803.1 gi|257387258|ref|YP_003177031.1| - 0.18 11.4 13.0 5.1 6.8 0.2 4.0 4 0 0 4 4 4 0 Nudix N-terminal zf-CHY PF05495.7 gi|257387258|ref|YP_003177031.1| - 0.31 11.2 1.3 0.74 10.0 0.3 1.9 2 0 0 2 2 2 0 CHY zinc finger YhfH PF14149.1 gi|257387258|ref|YP_003177031.1| - 2.4 8.0 4.4 88 3.0 0.2 3.3 3 0 0 3 3 3 0 YhfH-like protein zf-NADH-PPase PF09297.6 gi|257387258|ref|YP_003177031.1| - 3 7.4 11.5 1.4 8.4 0.2 3.0 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain zf-TFIIB PF13453.1 gi|257387258|ref|YP_003177031.1| - 3.4 6.9 8.8 1.1 8.5 2.0 2.9 2 1 0 2 2 2 0 Transcription factor zinc-finger UPF0547 PF10571.4 gi|257387258|ref|YP_003177031.1| - 6.4 6.5 6.4 6.7 6.4 0.1 3.1 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 PQQ_2 PF13360.1 gi|257387259|ref|YP_003177032.1| - 7.4e-19 68.1 11.0 2.3e-08 33.7 2.1 3.3 2 1 0 3 3 3 3 PQQ-like domain PQQ PF01011.16 gi|257387259|ref|YP_003177032.1| - 5.3e-12 44.6 9.1 7.2e-05 22.1 0.2 5.0 5 1 1 6 6 6 3 PQQ enzyme repeat PQQ_3 PF13570.1 gi|257387259|ref|YP_003177032.1| - 8.1e-11 41.8 26.6 0.0023 18.1 0.0 7.9 9 0 0 9 9 9 4 PQQ-like domain Met_10 PF02475.11 gi|257387260|ref|YP_003177033.1| - 4e-46 157.1 0.0 2.5e-26 92.4 0.0 2.2 2 0 0 2 2 2 2 Met-10+ like-protein Methyltransf_18 PF12847.2 gi|257387260|ref|YP_003177033.1| - 1.8e-11 44.6 0.0 4.9e-11 43.1 0.0 1.8 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|257387260|ref|YP_003177033.1| - 3.2e-10 40.0 0.4 3.2e-10 40.0 0.2 2.5 2 2 0 2 2 2 1 Methyltransferase domain Methyltransf_24 PF13578.1 gi|257387260|ref|YP_003177033.1| - 5.2e-07 30.4 0.1 2.9e-06 28.0 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|257387260|ref|YP_003177033.1| - 1.9e-05 24.2 0.0 2.7e-05 23.7 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Cons_hypoth95 PF03602.10 gi|257387260|ref|YP_003177033.1| - 4.9e-05 22.7 0.0 9.1e-05 21.9 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_31 PF13847.1 gi|257387260|ref|YP_003177033.1| - 0.00042 19.9 0.0 0.00064 19.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|257387260|ref|YP_003177033.1| - 0.0013 18.4 0.0 0.0041 16.8 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|257387260|ref|YP_003177033.1| - 0.0018 17.6 0.0 0.0035 16.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain RrnaAD PF00398.15 gi|257387260|ref|YP_003177033.1| - 0.033 13.2 0.0 0.05 12.6 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase SAM_MT PF04445.8 gi|257387260|ref|YP_003177033.1| - 0.035 13.2 0.0 0.05 12.7 0.0 1.2 1 0 0 1 1 1 0 Putative SAM-dependent methyltransferase tRNA_U5-meth_tr PF05958.6 gi|257387260|ref|YP_003177033.1| - 0.11 11.1 0.0 0.15 10.7 0.0 1.1 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase PrmA PF06325.8 gi|257387260|ref|YP_003177033.1| - 0.17 11.0 0.0 0.27 10.3 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) DNA_methylase PF00145.12 gi|257387260|ref|YP_003177033.1| - 0.19 10.8 0.0 0.23 10.5 0.0 1.1 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase hemP PF10636.4 gi|257387262|ref|YP_003177035.1| - 0.12 11.9 0.2 1.6 8.3 0.0 2.5 2 0 0 2 2 2 0 Hemin uptake protein hemP TAT_signal PF10518.4 gi|257387262|ref|YP_003177035.1| - 0.78 9.8 4.4 1.4 9.0 3.1 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Helicase_C_2 PF13307.1 gi|257387263|ref|YP_003177036.1| - 3.3e-21 75.9 0.0 6.1e-21 75.0 0.0 1.5 1 0 0 1 1 1 1 Helicase C-terminal domain AAA_19 PF13245.1 gi|257387263|ref|YP_003177036.1| - 1.5e-05 24.6 0.1 3.9e-05 23.3 0.1 1.7 1 0 0 1 1 1 1 Part of AAA domain DEAD_2 PF06733.10 gi|257387263|ref|YP_003177036.1| - 1.8e-05 24.2 0.0 2.9e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 DEAD_2 ResIII PF04851.10 gi|257387263|ref|YP_003177036.1| - 6.9e-05 22.7 0.0 0.012 15.4 0.0 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|257387263|ref|YP_003177036.1| - 0.00013 21.4 0.0 0.14 11.6 0.0 2.4 2 0 0 2 2 2 2 DEAD/DEAH box helicase AAA_30 PF13604.1 gi|257387263|ref|YP_003177036.1| - 0.00047 19.8 0.1 0.15 11.6 0.0 2.4 2 1 0 2 2 2 2 AAA domain AAA_25 PF13481.1 gi|257387263|ref|YP_003177036.1| - 0.00082 18.8 0.9 1.5 8.1 0.0 3.5 4 0 0 4 4 4 2 AAA domain AAA_16 PF13191.1 gi|257387263|ref|YP_003177036.1| - 0.0062 16.5 0.1 0.027 14.4 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|257387263|ref|YP_003177036.1| - 0.018 15.1 0.0 0.17 12.0 0.0 2.2 1 1 0 1 1 1 0 AAA domain PhoH PF02562.11 gi|257387263|ref|YP_003177036.1| - 0.05 12.8 0.0 0.093 11.9 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein AAA_10 PF12846.2 gi|257387263|ref|YP_003177036.1| - 0.05 13.0 0.0 8.4 5.7 0.0 2.3 2 0 0 2 2 2 0 AAA-like domain Mg_chelatase PF01078.16 gi|257387263|ref|YP_003177036.1| - 0.051 12.7 0.0 0.081 12.0 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI DXP_redisom_C PF08436.7 gi|257387263|ref|YP_003177036.1| - 0.16 11.8 0.0 0.41 10.5 0.0 1.6 1 0 0 1 1 1 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal AAA PF00004.24 gi|257387263|ref|YP_003177036.1| - 0.18 12.0 0.0 2.6 8.2 0.0 2.3 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) DUF1628 PF07790.6 gi|257387264|ref|YP_003177037.1| - 5.3e-05 23.8 0.1 0.00019 22.1 0.0 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF1628) Acetyltransf_13 PF13880.1 gi|257387265|ref|YP_003177038.1| - 0.088 12.5 0.0 0.11 12.3 0.0 1.2 1 0 0 1 1 1 0 ESCO1/2 acetyl-transferase Radical_SAM PF04055.16 gi|257387266|ref|YP_003177039.1| - 7.1e-18 65.3 0.0 1.2e-17 64.5 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily Wyosine_form PF08608.7 gi|257387266|ref|YP_003177039.1| - 1.2e-16 60.5 0.1 2.4e-16 59.5 0.1 1.6 1 0 0 1 1 1 1 Wyosine base formation HAD_2 PF13419.1 gi|257387266|ref|YP_003177039.1| - 0.001 19.3 0.5 0.022 14.9 0.0 2.4 3 0 0 3 3 3 1 Haloacid dehalogenase-like hydrolase bPH_3 PF14470.1 gi|257387267|ref|YP_003177040.1| - 0.024 14.8 0.0 0.037 14.3 0.0 1.3 1 0 0 1 1 1 0 Bacterial PH domain L27 PF02828.11 gi|257387267|ref|YP_003177040.1| - 0.08 12.6 0.3 0.31 10.7 0.0 2.2 2 0 0 2 2 2 0 L27 domain Apolipoprotein PF01442.13 gi|257387267|ref|YP_003177040.1| - 0.11 11.9 7.2 0.03 13.8 2.6 1.8 2 0 0 2 2 2 0 Apolipoprotein A1/A4/E domain YfdX PF10938.3 gi|257387267|ref|YP_003177040.1| - 2.3 7.8 10.1 0.53 9.9 3.9 2.2 2 1 0 2 2 2 0 YfdX protein Sulfatase PF00884.18 gi|257387269|ref|YP_003177042.1| - 2.4e-36 125.4 0.1 4.1e-36 124.7 0.1 1.3 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|257387269|ref|YP_003177042.1| - 1.4e-13 50.9 1.0 1.3e-08 34.6 0.0 2.2 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF229 PF02995.12 gi|257387269|ref|YP_003177042.1| - 0.00059 18.3 0.1 0.00083 17.8 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF229) Metalloenzyme PF01676.13 gi|257387269|ref|YP_003177042.1| - 0.0043 16.4 1.2 0.012 15.0 0.2 2.0 2 1 1 3 3 3 1 Metalloenzyme superfamily DUF1501 PF07394.7 gi|257387269|ref|YP_003177042.1| - 0.038 12.8 0.0 0.076 11.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1501) Alk_phosphatase PF00245.15 gi|257387269|ref|YP_003177042.1| - 0.051 12.2 0.0 0.098 11.3 0.0 1.4 1 0 0 1 1 1 0 Alkaline phosphatase Polysacc_synt PF01943.12 gi|257387270|ref|YP_003177043.1| - 2e-24 86.3 26.1 2e-24 86.3 18.1 2.6 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.1 gi|257387270|ref|YP_003177043.1| - 3.8e-22 78.9 18.4 3.8e-22 78.9 12.7 2.3 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|257387270|ref|YP_003177043.1| - 3e-10 40.0 22.8 3e-10 40.0 15.8 4.3 3 1 0 3 3 3 2 Polysaccharide biosynthesis C-terminal domain dTDP_sugar_isom PF00908.12 gi|257387271|ref|YP_003177044.1| - 1.3e-10 40.9 0.0 1.4e-10 40.7 0.0 1.0 1 0 0 1 1 1 1 dTDP-4-dehydrorhamnose 3,5-epimerase FdtA PF05523.6 gi|257387271|ref|YP_003177044.1| - 1e-07 31.4 0.0 1.4e-07 31.0 0.0 1.1 1 0 0 1 1 1 1 WxcM-like, C-terminal Cupin_2 PF07883.6 gi|257387271|ref|YP_003177044.1| - 0.0021 17.5 1.1 0.055 12.9 0.8 2.2 1 1 0 1 1 1 1 Cupin domain NTP_transferase PF00483.18 gi|257387272|ref|YP_003177045.1| - 1.8e-55 187.9 0.0 2.2e-55 187.6 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|257387272|ref|YP_003177045.1| - 6.9e-10 39.2 0.0 9.2e-10 38.8 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.19 gi|257387272|ref|YP_003177045.1| - 1.1e-07 31.0 1.8 0.00044 19.6 0.1 3.4 2 1 1 3 3 3 2 Bacterial transferase hexapeptide (six repeats) IspD PF01128.14 gi|257387272|ref|YP_003177045.1| - 0.0033 16.9 0.0 0.0059 16.1 0.0 1.4 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase IBR PF01485.16 gi|257387273|ref|YP_003177046.1| - 0.022 14.6 0.7 0.2 11.5 0.7 1.9 1 1 1 2 2 2 0 IBR domain DNA_ligase_ZBD PF03119.11 gi|257387273|ref|YP_003177046.1| - 0.033 13.8 4.3 0.075 12.7 3.0 1.7 1 1 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain UPF0547 PF10571.4 gi|257387273|ref|YP_003177046.1| - 0.037 13.7 0.4 0.037 13.7 0.3 2.0 2 1 0 1 1 1 0 Uncharacterised protein family UPF0547 Transpos_assoc PF13963.1 gi|257387273|ref|YP_003177046.1| - 0.085 12.8 0.2 0.094 12.7 0.2 1.2 1 0 0 1 1 1 0 Transposase-associated domain OrfB_Zn_ribbon PF07282.6 gi|257387273|ref|YP_003177046.1| - 0.1 12.2 0.6 0.15 11.7 0.4 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-TFIIB PF13453.1 gi|257387273|ref|YP_003177046.1| - 0.25 10.5 1.8 0.65 9.2 1.3 1.6 1 1 1 2 2 2 0 Transcription factor zinc-finger GAGA PF09237.6 gi|257387273|ref|YP_003177046.1| - 0.31 10.6 2.3 2.9 7.5 0.1 2.1 2 0 0 2 2 2 0 GAGA factor Rad50_zn_hook PF04423.9 gi|257387273|ref|YP_003177046.1| - 2.1 7.8 6.7 5.5 6.5 0.5 2.7 1 1 1 2 2 2 0 Rad50 zinc hook motif RmlD_sub_bind PF04321.12 gi|257387274|ref|YP_003177047.1| - 8.8e-72 241.3 0.0 9.8e-72 241.2 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.16 gi|257387274|ref|YP_003177047.1| - 4.6e-22 78.6 0.0 7.8e-22 77.8 0.0 1.3 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_4 PF07993.7 gi|257387274|ref|YP_003177047.1| - 1.2e-08 34.1 0.0 2.1e-08 33.4 0.0 1.4 1 0 0 1 1 1 1 Male sterility protein Polysacc_synt_2 PF02719.10 gi|257387274|ref|YP_003177047.1| - 3.6e-06 26.0 0.1 1.3e-05 24.2 0.0 2.0 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.1 gi|257387274|ref|YP_003177047.1| - 0.00027 21.0 0.0 0.0004 20.4 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding 3Beta_HSD PF01073.14 gi|257387274|ref|YP_003177047.1| - 0.0027 16.4 0.0 0.0056 15.4 0.0 1.5 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Epimerase PF01370.16 gi|257387275|ref|YP_003177048.1| - 2.4e-65 220.3 0.0 3.4e-65 219.7 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|257387275|ref|YP_003177048.1| - 2.7e-24 85.5 0.0 3.2e-24 85.3 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|257387275|ref|YP_003177048.1| - 1.5e-23 82.8 0.0 2.1e-23 82.4 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|257387275|ref|YP_003177048.1| - 2.9e-18 65.7 0.0 1.8e-17 63.2 0.0 1.8 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|257387275|ref|YP_003177048.1| - 1.3e-17 63.5 0.0 1.1e-16 60.5 0.0 2.0 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.1 gi|257387275|ref|YP_003177048.1| - 8.4e-09 35.6 0.0 1.4e-08 35.0 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|257387275|ref|YP_003177048.1| - 0.00011 22.2 0.5 0.0031 17.4 0.1 2.3 2 0 0 2 2 2 1 short chain dehydrogenase NmrA PF05368.8 gi|257387275|ref|YP_003177048.1| - 0.00016 20.9 0.0 0.00028 20.2 0.0 1.3 1 0 0 1 1 1 1 NmrA-like family KR PF08659.5 gi|257387275|ref|YP_003177048.1| - 0.012 15.3 0.4 0.042 13.5 0.0 2.0 2 1 0 2 2 2 0 KR domain NUDIX PF00293.23 gi|257387276|ref|YP_003177049.1| - 3.7e-11 42.7 0.0 4.3e-11 42.5 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.1 gi|257387276|ref|YP_003177049.1| - 0.1 12.0 0.0 0.16 11.4 0.0 1.3 1 0 0 1 1 1 0 NUDIX domain DDE_Tnp_1 PF01609.16 gi|257387277|ref|YP_003177050.1| - 5e-15 55.6 3.9 4.6e-14 52.4 2.7 2.0 1 1 0 1 1 1 1 Transposase DDE domain DUF4212 PF13937.1 gi|257387278|ref|YP_003177051.1| - 1.1e-21 76.6 0.0 1.3e-21 76.3 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4212) SSF PF00474.12 gi|257387279|ref|YP_003177052.1| - 1.7e-50 171.9 31.4 2.2e-50 171.4 21.7 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family Usp PF00582.21 gi|257387280|ref|YP_003177053.1| - 3.8e-39 134.0 2.5 4.4e-39 133.8 1.8 1.0 1 0 0 1 1 1 1 Universal stress protein family ETF PF01012.16 gi|257387280|ref|YP_003177053.1| - 0.0063 16.2 0.8 0.093 12.4 0.6 2.2 1 1 0 1 1 1 1 Electron transfer flavoprotein domain GARS_N PF02844.10 gi|257387280|ref|YP_003177053.1| - 0.057 13.8 0.1 2.8 8.4 0.0 2.2 1 1 1 2 2 2 0 Phosphoribosylglycinamide synthetase, N domain DUF1469 PF07332.6 gi|257387281|ref|YP_003177054.1| - 2.2 8.0 6.4 3.2 7.4 4.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) SRP54 PF00448.17 gi|257387282|ref|YP_003177055.1| - 4.6e-59 199.1 0.4 7.1e-59 198.5 0.2 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.14 gi|257387282|ref|YP_003177055.1| - 3.7e-30 104.2 6.5 3.7e-30 104.2 4.5 2.6 2 1 1 3 3 3 1 Signal peptide binding domain SRP54_N PF02881.14 gi|257387282|ref|YP_003177055.1| - 1.3e-14 54.0 0.0 4.6e-14 52.2 0.0 2.0 1 0 0 1 1 1 1 SRP54-type protein, helical bundle domain CbiA PF01656.18 gi|257387282|ref|YP_003177055.1| - 8.2e-06 25.3 0.1 3.7e-05 23.2 0.1 2.1 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MobB PF03205.9 gi|257387282|ref|YP_003177055.1| - 0.00075 19.2 0.0 0.0016 18.1 0.0 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B ArsA_ATPase PF02374.10 gi|257387282|ref|YP_003177055.1| - 0.0012 17.9 5.1 0.046 12.7 0.0 3.1 3 0 0 3 3 3 1 Anion-transporting ATPase AAA_10 PF12846.2 gi|257387282|ref|YP_003177055.1| - 0.0015 18.0 3.4 0.0023 17.4 2.4 1.5 1 1 0 1 1 1 1 AAA-like domain SMC_N PF02463.14 gi|257387282|ref|YP_003177055.1| - 0.0017 17.6 0.0 0.0028 16.9 0.0 1.3 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_25 PF13481.1 gi|257387282|ref|YP_003177055.1| - 0.0022 17.4 2.0 0.0067 15.8 1.2 2.0 1 1 0 1 1 1 1 AAA domain cobW PF02492.14 gi|257387282|ref|YP_003177055.1| - 0.0027 17.1 0.2 0.031 13.7 0.1 2.3 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_22 PF13401.1 gi|257387282|ref|YP_003177055.1| - 0.0044 17.1 0.4 0.022 14.8 0.0 2.4 3 0 0 3 3 3 1 AAA domain AAA_23 PF13476.1 gi|257387282|ref|YP_003177055.1| - 0.0056 17.0 0.3 0.023 15.0 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|257387282|ref|YP_003177055.1| - 0.01 16.1 0.1 0.072 13.3 0.0 2.4 2 0 0 2 2 2 0 AAA domain CARD PF00619.16 gi|257387282|ref|YP_003177055.1| - 0.042 13.6 1.3 0.21 11.4 0.1 2.3 2 0 0 2 2 2 0 Caspase recruitment domain TrwB_AAD_bind PF10412.4 gi|257387282|ref|YP_003177055.1| - 0.049 12.2 0.0 0.091 11.3 0.0 1.4 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain KaiC PF06745.8 gi|257387282|ref|YP_003177055.1| - 0.059 12.4 0.0 0.21 10.7 0.0 1.9 1 0 0 1 1 1 0 KaiC Mur_ligase_M PF08245.7 gi|257387282|ref|YP_003177055.1| - 0.067 13.2 0.0 0.11 12.5 0.0 1.3 1 0 0 1 1 1 0 Mur ligase middle domain AAA_19 PF13245.1 gi|257387282|ref|YP_003177055.1| - 0.087 12.5 0.1 0.34 10.6 0.0 2.0 2 0 0 2 2 1 0 Part of AAA domain APS_kinase PF01583.15 gi|257387282|ref|YP_003177055.1| - 0.089 12.4 0.0 0.17 11.5 0.0 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase PRK PF00485.13 gi|257387282|ref|YP_003177055.1| - 0.12 11.9 0.0 0.4 10.2 0.0 1.9 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family AAA_33 PF13671.1 gi|257387282|ref|YP_003177055.1| - 0.13 12.1 0.0 0.27 11.0 0.0 1.7 1 0 0 1 1 1 0 AAA domain SRPRB PF09439.5 gi|257387282|ref|YP_003177055.1| - 0.14 11.3 0.0 15 4.7 0.0 2.4 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit YppG PF14179.1 gi|257387282|ref|YP_003177055.1| - 1 10.0 6.4 0.52 10.9 2.6 1.8 1 1 0 2 2 2 0 YppG-like protein Cupin_2 PF07883.6 gi|257387283|ref|YP_003177056.1| - 4.8e-12 45.2 0.4 6.2e-12 44.8 0.2 1.2 1 0 0 1 1 1 1 Cupin domain MannoseP_isomer PF01050.13 gi|257387283|ref|YP_003177056.1| - 4e-05 23.2 0.0 4.7e-05 23.0 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase KduI PF04962.7 gi|257387283|ref|YP_003177056.1| - 0.0024 16.9 0.0 0.003 16.6 0.0 1.1 1 0 0 1 1 1 1 KduI/IolB family Cupin_7 PF12973.2 gi|257387283|ref|YP_003177056.1| - 0.006 16.3 0.0 0.0075 16.0 0.0 1.2 1 0 0 1 1 1 1 ChrR Cupin-like domain FdtA PF05523.6 gi|257387283|ref|YP_003177056.1| - 0.0076 15.7 0.0 0.01 15.3 0.0 1.2 1 0 0 1 1 1 1 WxcM-like, C-terminal AraC_binding PF02311.14 gi|257387283|ref|YP_003177056.1| - 0.012 15.3 0.0 0.016 14.9 0.0 1.2 1 0 0 1 1 1 0 AraC-like ligand binding domain Aldolase PF01081.14 gi|257387284|ref|YP_003177057.1| - 7.8e-42 142.6 3.6 9e-42 142.4 2.5 1.0 1 0 0 1 1 1 1 KDPG and KHG aldolase TMP-TENI PF02581.12 gi|257387284|ref|YP_003177057.1| - 0.0073 15.4 3.2 2.9 6.9 2.2 3.2 1 1 0 1 1 1 1 Thiamine monophosphate synthase/TENI DHO_dh PF01180.16 gi|257387284|ref|YP_003177057.1| - 0.012 14.5 9.8 0.15 10.9 0.2 2.9 1 1 2 3 3 3 0 Dihydroorotate dehydrogenase TrbC_Ftype PF09673.5 gi|257387284|ref|YP_003177057.1| - 0.14 11.7 0.0 0.28 10.7 0.0 1.5 1 0 0 1 1 1 0 Type-F conjugative transfer system pilin assembly protein SRP54 PF00448.17 gi|257387285|ref|YP_003177058.1| - 3.3e-68 228.9 0.2 4.5e-68 228.5 0.2 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.14 gi|257387285|ref|YP_003177058.1| - 1.2e-10 41.3 6.5 2.6e-10 40.2 0.5 2.5 2 0 0 2 2 2 1 SRP54-type protein, helical bundle domain APS_kinase PF01583.15 gi|257387285|ref|YP_003177058.1| - 2.7e-06 27.1 0.4 6.1e-06 25.9 0.1 1.8 2 0 0 2 2 1 1 Adenylylsulphate kinase Zeta_toxin PF06414.7 gi|257387285|ref|YP_003177058.1| - 2.5e-05 23.4 0.1 4e-05 22.7 0.1 1.3 1 0 0 1 1 1 1 Zeta toxin AAA_33 PF13671.1 gi|257387285|ref|YP_003177058.1| - 6e-05 22.9 0.0 0.00019 21.3 0.0 1.8 2 0 0 2 2 2 1 AAA domain Thymidylate_kin PF02223.12 gi|257387285|ref|YP_003177058.1| - 6.4e-05 22.4 0.1 0.0025 17.2 0.0 2.4 2 0 0 2 2 2 1 Thymidylate kinase AAA_18 PF13238.1 gi|257387285|ref|YP_003177058.1| - 0.00011 22.5 0.7 0.00042 20.6 0.0 2.3 2 1 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|257387285|ref|YP_003177058.1| - 0.00018 22.2 0.3 0.00018 22.2 0.2 2.4 2 2 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|257387285|ref|YP_003177058.1| - 0.00019 21.5 6.3 0.00076 19.5 0.0 2.4 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|257387285|ref|YP_003177058.1| - 0.00065 19.8 0.0 0.0019 18.3 0.0 1.8 1 0 0 1 1 1 1 AAA domain cobW PF02492.14 gi|257387285|ref|YP_003177058.1| - 0.00066 19.1 0.4 0.00066 19.1 0.3 1.6 2 0 0 2 2 1 1 CobW/HypB/UreG, nucleotide-binding domain AAA_30 PF13604.1 gi|257387285|ref|YP_003177058.1| - 0.00083 18.9 1.4 0.00083 18.9 1.0 1.9 2 1 0 2 2 1 1 AAA domain AAA_28 PF13521.1 gi|257387285|ref|YP_003177058.1| - 0.0012 18.7 0.3 0.0012 18.7 0.2 2.5 3 1 0 3 3 2 1 AAA domain NTPase_1 PF03266.10 gi|257387285|ref|YP_003177058.1| - 0.0022 17.7 0.4 0.0045 16.7 0.3 1.5 1 0 0 1 1 1 1 NTPase MobB PF03205.9 gi|257387285|ref|YP_003177058.1| - 0.0053 16.4 0.4 0.013 15.1 0.3 1.6 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B DUF2075 PF09848.4 gi|257387285|ref|YP_003177058.1| - 0.0055 15.7 0.0 0.0095 14.9 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) KTI12 PF08433.5 gi|257387285|ref|YP_003177058.1| - 0.0074 15.5 0.0 0.013 14.6 0.0 1.3 1 0 0 1 1 1 1 Chromatin associated protein KTI12 CbiA PF01656.18 gi|257387285|ref|YP_003177058.1| - 0.013 14.9 4.4 0.014 14.7 1.6 2.1 2 1 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_19 PF13245.1 gi|257387285|ref|YP_003177058.1| - 0.018 14.7 0.1 0.053 13.2 0.0 1.9 1 0 0 1 1 1 0 Part of AAA domain ArgK PF03308.11 gi|257387285|ref|YP_003177058.1| - 0.021 13.6 0.1 0.044 12.5 0.1 1.5 1 0 0 1 1 1 0 ArgK protein PPK2 PF03976.9 gi|257387285|ref|YP_003177058.1| - 0.027 13.7 0.0 0.042 13.1 0.0 1.2 1 0 0 1 1 1 0 Polyphosphate kinase 2 (PPK2) AAA_14 PF13173.1 gi|257387285|ref|YP_003177058.1| - 0.034 14.0 0.0 0.11 12.4 0.0 1.8 2 0 0 2 2 1 0 AAA domain AAA_29 PF13555.1 gi|257387285|ref|YP_003177058.1| - 0.04 13.4 0.0 0.091 12.3 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain MMR_HSR1 PF01926.18 gi|257387285|ref|YP_003177058.1| - 0.062 13.2 0.0 0.19 11.7 0.0 1.8 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_5 PF07728.9 gi|257387285|ref|YP_003177058.1| - 0.097 12.4 0.0 0.21 11.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|257387285|ref|YP_003177058.1| - 0.12 12.5 0.3 0.37 10.9 0.2 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.1 gi|257387285|ref|YP_003177058.1| - 0.13 12.5 0.5 0.32 11.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|257387285|ref|YP_003177058.1| - 0.15 11.2 0.0 0.22 10.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 ArsA_ATPase PF02374.10 gi|257387285|ref|YP_003177058.1| - 0.18 10.8 1.0 0.31 10.0 0.3 1.6 1 1 1 2 2 2 0 Anion-transporting ATPase Prefoldin PF02996.12 gi|257387286|ref|YP_003177059.1| - 5.4e-23 80.9 10.1 5.4e-23 80.9 7.0 1.7 1 1 0 1 1 1 1 Prefoldin subunit Prefoldin_2 PF01920.15 gi|257387286|ref|YP_003177059.1| - 7.2e-09 35.3 23.8 0.00017 21.2 4.9 2.5 1 1 0 2 2 2 2 Prefoldin subunit APG6 PF04111.7 gi|257387286|ref|YP_003177059.1| - 0.00019 20.6 20.5 0.019 14.0 4.5 2.0 2 0 0 2 2 2 2 Autophagy protein Apg6 Nsp1_C PF05064.8 gi|257387286|ref|YP_003177059.1| - 0.00022 20.8 3.9 0.00022 20.8 2.7 2.3 2 0 0 2 2 2 1 Nsp1-like C-terminal region FliD_C PF07195.7 gi|257387286|ref|YP_003177059.1| - 0.00037 19.8 10.1 0.0016 17.7 2.4 2.1 2 0 0 2 2 2 1 Flagellar hook-associated protein 2 C-terminus TBPIP PF07106.8 gi|257387286|ref|YP_003177059.1| - 0.00073 19.1 15.5 0.07 12.6 3.0 2.2 2 0 0 2 2 2 2 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) GAS PF13851.1 gi|257387286|ref|YP_003177059.1| - 0.0015 17.7 12.9 0.025 13.7 2.1 2.1 2 0 0 2 2 2 2 Growth-arrest specific micro-tubule binding Ax_dynein_light PF10211.4 gi|257387286|ref|YP_003177059.1| - 0.0017 18.2 21.4 0.082 12.7 6.9 2.1 2 0 0 2 2 2 2 Axonemal dynein light chain DUF972 PF06156.8 gi|257387286|ref|YP_003177059.1| - 0.0018 18.5 11.8 0.056 13.7 0.4 2.2 2 0 0 2 2 2 1 Protein of unknown function (DUF972) IncA PF04156.9 gi|257387286|ref|YP_003177059.1| - 0.0019 17.8 23.4 0.014 14.9 5.0 2.1 2 0 0 2 2 2 2 IncA protein DivIC PF04977.10 gi|257387286|ref|YP_003177059.1| - 0.002 17.5 5.1 0.002 17.5 3.5 3.5 2 1 2 4 4 2 1 Septum formation initiator Laminin_I PF06008.9 gi|257387286|ref|YP_003177059.1| - 0.0034 16.7 14.8 0.1 11.8 3.9 2.1 2 0 0 2 2 2 2 Laminin Domain I ADIP PF11559.3 gi|257387286|ref|YP_003177059.1| - 0.0053 16.6 4.0 0.0053 16.6 2.8 2.1 2 0 0 2 2 2 1 Afadin- and alpha -actinin-Binding CENP-F_leu_zip PF10473.4 gi|257387286|ref|YP_003177059.1| - 0.0057 16.5 23.2 0.052 13.3 6.3 2.2 2 0 0 2 2 2 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 COG2 PF06148.6 gi|257387286|ref|YP_003177059.1| - 0.0066 16.3 9.3 0.13 12.0 0.8 2.1 2 0 0 2 2 2 1 COG (conserved oligomeric Golgi) complex component, COG2 Spc24 PF08286.6 gi|257387286|ref|YP_003177059.1| - 0.0067 16.1 22.4 0.14 11.8 1.7 2.1 2 0 0 2 2 2 2 Spc24 subunit of Ndc80 Tropomyosin_1 PF12718.2 gi|257387286|ref|YP_003177059.1| - 0.0093 15.8 26.3 0.15 11.8 4.9 2.1 2 0 0 2 2 2 2 Tropomyosin like Dor1 PF04124.7 gi|257387286|ref|YP_003177059.1| - 0.0094 14.4 6.4 0.082 11.3 0.9 2.0 2 0 0 2 2 2 1 Dor1-like family TMF_TATA_bd PF12325.3 gi|257387286|ref|YP_003177059.1| - 0.0097 15.6 17.2 0.24 11.1 3.3 2.5 2 0 0 2 2 2 2 TATA element modulatory factor 1 TATA binding Sugarporin_N PF11471.3 gi|257387286|ref|YP_003177059.1| - 0.01 15.4 5.5 0.01 15.4 3.8 2.3 2 1 0 2 2 1 0 Maltoporin periplasmic N-terminal extension AAA_13 PF13166.1 gi|257387286|ref|YP_003177059.1| - 0.011 14.2 17.4 0.14 10.5 2.1 2.0 2 0 0 2 2 2 0 AAA domain Baculo_PEP_C PF04513.7 gi|257387286|ref|YP_003177059.1| - 0.012 15.4 8.5 0.58 9.9 0.2 2.2 2 0 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF1664 PF07889.7 gi|257387286|ref|YP_003177059.1| - 0.02 14.6 14.7 0.24 11.1 2.3 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) Allexi_40kDa PF05549.6 gi|257387286|ref|YP_003177059.1| - 0.021 14.1 3.0 0.57 9.4 0.3 2.0 2 0 0 2 2 2 0 Allexivirus 40kDa protein ORF6C PF10552.4 gi|257387286|ref|YP_003177059.1| - 0.022 14.4 15.1 0.11 12.2 2.1 2.3 2 0 0 2 2 2 0 ORF6C domain CorA PF01544.13 gi|257387286|ref|YP_003177059.1| - 0.022 13.7 13.5 0.018 14.0 2.0 2.1 2 0 0 2 2 2 0 CorA-like Mg2+ transporter protein Reo_sigmaC PF04582.7 gi|257387286|ref|YP_003177059.1| - 0.023 13.8 0.9 0.032 13.4 0.6 1.2 1 0 0 1 1 1 0 Reovirus sigma C capsid protein Sipho_Gp157 PF05565.6 gi|257387286|ref|YP_003177059.1| - 0.024 14.2 11.8 0.55 9.7 0.9 2.2 2 0 0 2 2 2 0 Siphovirus Gp157 Osmo_CC PF08946.5 gi|257387286|ref|YP_003177059.1| - 0.025 14.5 5.6 0.025 14.5 3.9 3.7 3 2 1 4 4 3 0 Osmosensory transporter coiled coil EzrA PF06160.7 gi|257387286|ref|YP_003177059.1| - 0.028 12.6 20.5 0.13 10.4 5.5 2.1 2 0 0 2 2 2 0 Septation ring formation regulator, EzrA DUF904 PF06005.7 gi|257387286|ref|YP_003177059.1| - 0.03 14.6 23.8 0.33 11.2 5.8 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF904) Hemerythrin PF01814.18 gi|257387286|ref|YP_003177059.1| - 0.036 14.2 6.5 0.79 9.8 0.3 2.2 1 1 1 2 2 2 0 Hemerythrin HHE cation binding domain SlyX PF04102.7 gi|257387286|ref|YP_003177059.1| - 0.04 14.2 13.7 0.04 14.2 9.5 2.4 2 0 0 2 2 2 0 SlyX STAT_alpha PF01017.15 gi|257387286|ref|YP_003177059.1| - 0.041 13.6 17.5 0.23 11.1 0.8 2.2 2 0 0 2 2 2 0 STAT protein, all-alpha domain DUF3450 PF11932.3 gi|257387286|ref|YP_003177059.1| - 0.042 13.0 20.4 0.39 9.9 6.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) DUF4618 PF15397.1 gi|257387286|ref|YP_003177059.1| - 0.048 12.9 15.6 0.25 10.6 2.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4618) Phage_GP20 PF06810.6 gi|257387286|ref|YP_003177059.1| - 0.051 13.0 19.0 0.12 11.7 5.4 2.1 2 0 0 2 2 2 0 Phage minor structural protein GP20 Nup54 PF13874.1 gi|257387286|ref|YP_003177059.1| - 0.052 13.2 1.5 0.052 13.2 1.0 2.1 2 0 0 2 2 2 0 Nucleoporin complex subunit 54 FliD_N PF02465.13 gi|257387286|ref|YP_003177059.1| - 0.07 13.5 0.2 0.07 13.5 0.2 2.7 1 1 2 3 3 2 0 Flagellar hook-associated protein 2 N-terminus DUF812 PF05667.6 gi|257387286|ref|YP_003177059.1| - 0.072 11.5 22.3 0.26 9.7 3.7 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF812) 5_nucleotid PF05761.9 gi|257387286|ref|YP_003177059.1| - 0.072 11.5 5.6 0.099 11.1 3.9 1.1 1 0 0 1 1 1 0 5' nucleotidase family DUF4337 PF14235.1 gi|257387286|ref|YP_003177059.1| - 0.082 12.7 20.9 0.42 10.4 7.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4337) WEMBL PF05701.6 gi|257387286|ref|YP_003177059.1| - 0.099 11.0 16.5 0.3 9.4 3.4 2.0 2 0 0 2 2 2 0 Weak chloroplast movement under blue light TPR_MLP1_2 PF07926.7 gi|257387286|ref|YP_003177059.1| - 0.11 12.2 25.0 0.11 12.3 7.6 2.2 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein Fib_alpha PF08702.5 gi|257387286|ref|YP_003177059.1| - 0.11 12.5 14.4 0.36 10.9 4.3 2.2 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family Med4 PF10018.4 gi|257387286|ref|YP_003177059.1| - 0.12 11.7 18.0 0.31 10.4 2.9 2.5 2 0 0 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 EMP24_GP25L PF01105.19 gi|257387286|ref|YP_003177059.1| - 0.12 12.0 14.7 0.56 9.8 1.9 2.2 2 0 0 2 2 2 0 emp24/gp25L/p24 family/GOLD Seryl_tRNA_N PF02403.17 gi|257387286|ref|YP_003177059.1| - 0.13 12.2 17.0 0.38 10.8 2.9 2.5 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain Snf7 PF03357.16 gi|257387286|ref|YP_003177059.1| - 0.14 11.5 24.1 0.16 11.3 1.6 2.7 2 1 0 2 2 2 0 Snf7 bZIP_1 PF00170.16 gi|257387286|ref|YP_003177059.1| - 0.14 12.0 13.8 1.6 8.7 2.6 2.4 2 0 0 2 2 2 0 bZIP transcription factor FlaC_arch PF05377.6 gi|257387286|ref|YP_003177059.1| - 0.15 11.9 20.6 0.21 11.5 1.4 3.6 3 1 0 3 3 3 0 Flagella accessory protein C (FlaC) Cytochrom_C_2 PF01322.15 gi|257387286|ref|YP_003177059.1| - 0.16 12.5 5.5 0.14 12.6 1.0 2.0 2 0 0 2 2 2 0 Cytochrome C' MscS_porin PF12795.2 gi|257387286|ref|YP_003177059.1| - 0.16 11.2 24.2 0.17 11.2 2.5 2.1 2 0 0 2 2 2 0 Mechanosensitive ion channel porin domain TP_methylase PF00590.15 gi|257387286|ref|YP_003177059.1| - 0.18 11.4 0.1 0.18 11.4 0.1 1.8 1 1 1 2 2 2 0 Tetrapyrrole (Corrin/Porphyrin) Methylases BLOC1_2 PF10046.4 gi|257387286|ref|YP_003177059.1| - 0.19 11.9 19.7 0.4 10.8 3.2 2.6 2 1 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DivIVA PF05103.8 gi|257387286|ref|YP_003177059.1| - 0.21 11.6 21.6 0.32 11.0 4.6 2.1 2 0 0 2 2 2 0 DivIVA protein Cluap1 PF10234.4 gi|257387286|ref|YP_003177059.1| - 0.21 10.7 12.3 0.71 9.0 1.9 2.1 2 0 0 2 2 2 0 Clusterin-associated protein-1 Atg14 PF10186.4 gi|257387286|ref|YP_003177059.1| - 0.24 10.3 10.7 1.2 7.9 1.5 2.0 2 0 0 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 Bap31 PF05529.7 gi|257387286|ref|YP_003177059.1| - 0.24 10.8 9.9 0.096 12.1 1.1 2.1 2 0 0 2 2 2 0 B-cell receptor-associated protein 31-like Fzo_mitofusin PF04799.8 gi|257387286|ref|YP_003177059.1| - 0.25 10.6 12.9 0.84 8.9 1.2 2.2 2 0 0 2 2 2 0 fzo-like conserved region CENP-H PF05837.7 gi|257387286|ref|YP_003177059.1| - 0.28 11.3 12.6 0.29 11.3 0.5 2.3 2 0 0 2 2 2 0 Centromere protein H (CENP-H) DUF4140 PF13600.1 gi|257387286|ref|YP_003177059.1| - 0.29 11.5 18.5 1.8 9.0 3.5 2.6 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) YlqD PF11068.3 gi|257387286|ref|YP_003177059.1| - 0.29 11.1 26.9 0.59 10.1 3.9 2.2 2 0 0 2 2 2 0 YlqD protein DUF724 PF05266.9 gi|257387286|ref|YP_003177059.1| - 0.32 10.6 16.9 0.12 11.9 3.6 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF724) Tektin PF03148.9 gi|257387286|ref|YP_003177059.1| - 0.33 9.4 16.4 1.1 7.7 2.4 2.2 2 0 0 2 2 2 0 Tektin family NPV_P10 PF05531.7 gi|257387286|ref|YP_003177059.1| - 0.33 11.2 19.8 1.6 9.0 4.2 2.6 2 1 0 2 2 2 0 Nucleopolyhedrovirus P10 protein Laminin_II PF06009.7 gi|257387286|ref|YP_003177059.1| - 0.36 10.5 8.7 3 7.6 0.2 2.2 2 0 0 2 2 2 0 Laminin Domain II ATP-synt_E PF05680.7 gi|257387286|ref|YP_003177059.1| - 0.41 10.6 12.2 0.68 9.9 0.6 2.2 2 0 0 2 2 2 0 ATP synthase E chain DUF1515 PF07439.6 gi|257387286|ref|YP_003177059.1| - 0.46 10.3 8.8 1.7 8.4 0.6 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1515) LLC1 PF14945.1 gi|257387286|ref|YP_003177059.1| - 0.46 10.8 4.8 1.8 8.8 0.1 2.2 2 0 0 2 2 2 0 Normal lung function maintenance, Low in Lung Cancer 1 protein Fmp27_WPPW PF10359.4 gi|257387286|ref|YP_003177059.1| - 0.49 8.7 14.5 0.28 9.5 3.8 2.0 2 0 0 2 2 2 0 RNA pol II promoter Fmp27 protein domain Lebercilin PF15619.1 gi|257387286|ref|YP_003177059.1| - 0.5 9.7 16.7 1.6 8.0 1.2 2.1 2 0 0 2 2 2 0 Ciliary protein causing Leber congenital amaurosis disease DUF3086 PF11285.3 gi|257387286|ref|YP_003177059.1| - 0.6 8.8 12.5 3.3 6.4 8.7 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF3086) Uds1 PF15456.1 gi|257387286|ref|YP_003177059.1| - 0.61 10.0 12.2 2.2 8.3 7.9 2.1 1 1 0 1 1 1 0 Up-regulated During Septation DUF342 PF03961.8 gi|257387286|ref|YP_003177059.1| - 0.74 8.1 17.7 1 7.7 3.6 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF342) DAGK_cat PF00781.19 gi|257387286|ref|YP_003177059.1| - 0.76 9.2 4.2 0.4 10.1 0.4 2.0 1 1 0 2 2 2 0 Diacylglycerol kinase catalytic domain TMF_DNA_bd PF12329.3 gi|257387286|ref|YP_003177059.1| - 0.79 9.5 22.5 0.19 11.5 2.8 2.8 2 1 1 3 3 3 0 TATA element modulatory factor 1 DNA binding WXG100 PF06013.7 gi|257387286|ref|YP_003177059.1| - 0.81 9.7 22.1 2.9 7.9 2.0 2.6 2 1 0 2 2 2 0 Proteins of 100 residues with WXG CENP-Q PF13094.1 gi|257387286|ref|YP_003177059.1| - 0.88 9.5 18.3 0.45 10.5 4.9 2.3 2 0 0 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit Mnd1 PF03962.10 gi|257387286|ref|YP_003177059.1| - 0.93 9.1 20.5 2.4 7.7 2.7 2.1 2 0 0 2 2 2 0 Mnd1 family Tho2 PF11262.3 gi|257387286|ref|YP_003177059.1| - 0.94 8.4 11.0 0.27 10.2 0.7 2.0 2 0 0 2 2 2 0 Transcription factor/nuclear export subunit protein 2 XhlA PF10779.4 gi|257387286|ref|YP_003177059.1| - 1.1 9.2 23.5 1.1 9.2 5.0 2.9 2 1 0 2 2 2 0 Haemolysin XhlA Sec34 PF04136.10 gi|257387286|ref|YP_003177059.1| - 1.1 8.9 8.4 2 8.1 0.7 2.2 2 0 0 2 2 2 0 Sec34-like family AAA_27 PF13514.1 gi|257387286|ref|YP_003177059.1| - 1.1 6.8 20.0 2.3 5.8 13.9 1.4 1 1 0 1 1 1 0 AAA domain DUF2203 PF09969.4 gi|257387286|ref|YP_003177059.1| - 1.2 9.3 9.9 3.6 7.8 0.3 2.3 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2203) Macoilin PF09726.4 gi|257387286|ref|YP_003177059.1| - 1.2 7.2 19.2 0.058 11.6 5.3 2.0 2 0 0 2 2 2 0 Transmembrane protein DUF4391 PF14335.1 gi|257387286|ref|YP_003177059.1| - 1.3 8.3 15.2 0.027 13.8 2.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4391) DUF2730 PF10805.3 gi|257387286|ref|YP_003177059.1| - 1.3 8.7 8.5 2.5 7.8 1.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2730) DUF3847 PF12958.2 gi|257387286|ref|YP_003177059.1| - 1.3 8.7 19.7 1 9.1 4.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3847) HAUS6_N PF14661.1 gi|257387286|ref|YP_003177059.1| - 1.4 8.2 17.4 0.14 11.4 0.8 2.0 2 0 0 2 2 2 0 HAUS augmin-like complex subunit 6 N-terminus DUF2130 PF09903.4 gi|257387286|ref|YP_003177059.1| - 1.4 7.6 13.7 1.9 7.1 1.2 2.2 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2130) Synaptobrevin PF00957.16 gi|257387286|ref|YP_003177059.1| - 1.4 8.5 14.1 0.37 10.4 2.4 2.4 2 0 0 2 2 2 0 Synaptobrevin KLRAQ PF10205.4 gi|257387286|ref|YP_003177059.1| - 1.5 8.8 11.7 1.1 9.3 3.0 2.2 2 0 0 2 2 2 0 Predicted coiled-coil domain-containing protein DUF3186 PF11382.3 gi|257387286|ref|YP_003177059.1| - 1.6 7.8 11.2 2.1 7.3 1.7 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3186) AAA_23 PF13476.1 gi|257387286|ref|YP_003177059.1| - 1.6 9.0 22.5 3.6 7.8 3.5 2.1 2 0 0 2 2 2 0 AAA domain ERM PF00769.14 gi|257387286|ref|YP_003177059.1| - 1.6 8.2 25.2 1.7 8.1 3.5 2.1 2 0 0 2 2 2 0 Ezrin/radixin/moesin family DUF3373 PF11853.3 gi|257387286|ref|YP_003177059.1| - 1.6 7.1 16.4 0.39 9.2 0.8 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3373) GrpE PF01025.14 gi|257387286|ref|YP_003177059.1| - 1.7 8.2 15.8 3.8 7.0 0.7 2.2 2 0 0 2 2 2 0 GrpE Viral_P18 PF04521.8 gi|257387286|ref|YP_003177059.1| - 1.7 8.1 7.3 2.4 7.5 2.0 2.1 2 0 0 2 2 2 0 ssRNA positive strand viral 18kD cysteine rich protein ThylakoidFormat PF11264.3 gi|257387286|ref|YP_003177059.1| - 1.7 8.2 9.3 0.85 9.1 2.3 2.1 2 0 0 2 2 2 0 Thylakoid formation protein Flagellin_C PF00700.16 gi|257387286|ref|YP_003177059.1| - 1.8 8.7 17.9 4.6 7.4 5.2 2.5 2 0 0 2 2 2 0 Bacterial flagellin C-terminal helical region Rootletin PF15035.1 gi|257387286|ref|YP_003177059.1| - 1.9 8.4 17.7 0.42 10.5 3.3 2.1 2 0 0 2 2 2 0 Ciliary rootlet component, centrosome cohesion T2SM PF04612.7 gi|257387286|ref|YP_003177059.1| - 1.9 8.2 13.3 0.89 9.3 4.0 2.2 2 0 0 2 2 2 0 Type II secretion system (T2SS), protein M MAT1 PF06391.8 gi|257387286|ref|YP_003177059.1| - 1.9 8.0 17.6 0.5 9.9 3.5 2.0 2 0 0 2 2 2 0 CDK-activating kinase assembly factor MAT1 Tmemb_cc2 PF10267.4 gi|257387286|ref|YP_003177059.1| - 1.9 6.9 16.5 0.04 12.5 1.1 2.1 2 0 0 2 2 2 0 Predicted transmembrane and coiled-coil 2 protein DUF607 PF04678.8 gi|257387286|ref|YP_003177059.1| - 2 8.3 13.4 1.2 9.0 2.7 2.1 1 1 1 2 2 2 0 Protein of unknown function, DUF607 Herpes_UL6 PF01763.11 gi|257387286|ref|YP_003177059.1| - 2.1 6.4 9.9 1.8 6.6 2.9 2.0 2 0 0 2 2 2 0 Herpesvirus UL6 like LUC7 PF03194.10 gi|257387286|ref|YP_003177059.1| - 2.2 7.7 14.6 2.6 7.5 1.3 2.1 2 0 0 2 2 2 0 LUC7 N_terminus SPX PF03105.14 gi|257387286|ref|YP_003177059.1| - 2.3 7.9 13.7 0.16 11.7 2.4 2.0 2 0 0 2 2 2 0 SPX domain FH2 PF02181.18 gi|257387286|ref|YP_003177059.1| - 2.4 6.9 12.6 2.9 6.7 2.9 2.1 2 0 0 2 2 2 0 Formin Homology 2 Domain CDC37_N PF03234.9 gi|257387286|ref|YP_003177059.1| - 2.5 8.4 17.1 5.8 7.2 11.8 1.6 1 1 0 1 1 1 0 Cdc37 N terminal kinase binding DUF4446 PF14584.1 gi|257387286|ref|YP_003177059.1| - 2.6 7.8 14.6 5.7 6.7 3.6 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4446) Cauli_DNA-bind PF03310.8 gi|257387286|ref|YP_003177059.1| - 2.6 7.8 11.6 0.83 9.5 2.4 2.3 2 0 0 2 2 2 0 Caulimovirus DNA-binding protein DUF2317 PF10079.4 gi|257387286|ref|YP_003177059.1| - 2.7 6.5 12.6 0.96 7.9 2.4 2.0 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2317) MIF4G_like_2 PF09090.6 gi|257387286|ref|YP_003177059.1| - 2.7 7.1 12.1 3.5 6.7 1.2 2.0 2 0 0 2 2 2 0 MIF4G like Spc7 PF08317.6 gi|257387286|ref|YP_003177059.1| - 2.9 6.4 22.3 1.1 7.9 4.2 2.0 1 1 0 2 2 2 0 Spc7 kinetochore protein Cep57_CLD_2 PF14197.1 gi|257387286|ref|YP_003177059.1| - 3 7.8 13.7 1 9.3 1.3 2.3 2 0 0 2 2 2 0 Centrosome localisation domain of PPC89 DUF3584 PF12128.3 gi|257387286|ref|YP_003177059.1| - 3.1 4.9 21.1 5.2 4.2 13.1 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF3584) P4Ha_N PF08336.6 gi|257387286|ref|YP_003177059.1| - 3.3 7.5 13.6 2.5 7.9 2.7 2.2 2 0 0 2 2 2 0 Prolyl 4-Hydroxylase alpha-subunit, N-terminal region TMCO5 PF14992.1 gi|257387286|ref|YP_003177059.1| - 3.4 6.7 15.6 0.41 9.7 3.5 2.0 2 0 0 2 2 2 0 TMCO5 family Occludin_ELL PF07303.8 gi|257387286|ref|YP_003177059.1| - 3.5 8.4 12.2 6.5 7.5 1.1 2.3 2 0 0 2 2 2 0 Occludin homology domain V_ATPase_I PF01496.14 gi|257387286|ref|YP_003177059.1| - 3.6 5.3 19.1 0.77 7.5 3.3 2.0 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family DUF948 PF06103.6 gi|257387286|ref|YP_003177059.1| - 3.9 7.4 13.7 3.3 7.6 1.1 2.3 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) DUF2937 PF11157.3 gi|257387286|ref|YP_003177059.1| - 4 6.7 9.6 1.4 8.2 3.4 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2937) MRP-L28 PF09812.4 gi|257387286|ref|YP_003177059.1| - 4.2 7.1 11.9 4.3 7.1 0.6 2.2 2 0 0 2 2 2 0 Mitochondrial ribosomal protein L28 DUF3552 PF12072.3 gi|257387286|ref|YP_003177059.1| - 4.5 6.4 23.3 1.9 7.6 7.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF3552) ISG65-75 PF11727.3 gi|257387286|ref|YP_003177059.1| - 4.6 6.2 13.4 3 6.8 4.2 2.0 2 0 0 2 2 2 0 Invariant surface glycoprotein SAS4 PF15460.1 gi|257387286|ref|YP_003177059.1| - 4.7 7.1 11.9 2.6 7.9 2.4 2.4 2 0 0 2 2 2 0 Something about silencing, SAS, complex subunit 4 UBN2_3 PF14244.1 gi|257387286|ref|YP_003177059.1| - 5.1 6.6 7.1 5.7 6.4 0.1 2.1 2 0 0 2 2 2 0 gag-polypeptide of LTR copia-type DUF1319 PF07028.6 gi|257387286|ref|YP_003177059.1| - 5.1 7.2 13.1 1.5 9.0 1.3 2.8 2 1 0 2 2 2 0 Protein of unknown function (DUF1319) Cob_adeno_trans PF01923.13 gi|257387286|ref|YP_003177059.1| - 5.5 6.7 11.5 0.77 9.5 2.3 2.3 1 1 1 2 2 2 0 Cobalamin adenosyltransferase Nitro_FeMo-Co PF02579.12 gi|257387286|ref|YP_003177059.1| - 5.8 7.0 8.4 0.94 9.5 0.1 2.9 2 1 2 4 4 3 0 Dinitrogenase iron-molybdenum cofactor Acyl-CoA_dh_C PF12806.2 gi|257387286|ref|YP_003177059.1| - 5.8 6.7 10.5 2.3 8.0 0.2 2.3 1 1 0 2 2 2 0 Acetyl-CoA dehydrogenase C-terminal like NTR2 PF15458.1 gi|257387286|ref|YP_003177059.1| - 6.2 5.9 28.2 0.29 10.3 5.5 2.5 2 1 0 2 2 2 0 Nineteen complex-related protein 2 FemAB PF02388.11 gi|257387286|ref|YP_003177059.1| - 6.8 5.2 13.2 5.6 5.5 0.3 2.0 2 0 0 2 2 2 0 FemAB family Syntaxin-6_N PF09177.6 gi|257387286|ref|YP_003177059.1| - 6.9 7.1 17.1 5 7.6 2.7 2.5 2 1 0 2 2 2 0 Syntaxin 6, N-terminal PAF-AH_p_II PF03403.8 gi|257387286|ref|YP_003177059.1| - 7 4.8 8.4 0.17 10.1 0.7 1.8 1 1 1 2 2 2 0 Platelet-activating factor acetylhydrolase, isoform II Rho_Binding PF08912.6 gi|257387286|ref|YP_003177059.1| - 7 7.0 19.1 0.95 9.8 4.0 2.4 2 0 0 2 2 2 0 Rho Binding GP41 PF00517.12 gi|257387286|ref|YP_003177059.1| - 7.4 6.0 13.1 1.5 8.3 0.8 2.3 2 0 0 2 2 2 0 Retroviral envelope protein Asp-B-Hydro_N PF05279.6 gi|257387286|ref|YP_003177059.1| - 8.6 6.1 19.0 0.98 9.2 4.7 2.1 2 0 0 2 2 2 0 Aspartyl beta-hydroxylase N-terminal region Ribosomal_L18ae PF01775.12 gi|257387287|ref|YP_003177060.1| - 5.5e-09 35.9 0.0 5.8e-09 35.9 0.0 1.0 1 0 0 1 1 1 1 Ribosomal L18ae/LX protein domain eIF-6 PF01912.13 gi|257387288|ref|YP_003177061.1| - 5.8e-69 231.1 0.0 6.7e-69 230.9 0.0 1.0 1 0 0 1 1 1 1 eIF-6 family Ribosomal_L31e PF01198.14 gi|257387289|ref|YP_003177062.1| - 1.8e-25 88.4 0.6 1.9e-25 88.2 0.4 1.0 1 0 0 1 1 1 1 Ribosomal protein L31e Ribosomal_L39 PF00832.15 gi|257387290|ref|YP_003177063.1| - 1.2e-19 69.4 7.5 1.4e-19 69.2 5.2 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein TAT_signal PF10518.4 gi|257387291|ref|YP_003177064.1| - 0.086 12.8 3.6 0.18 11.9 2.5 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF466 PF04328.8 gi|257387291|ref|YP_003177064.1| - 0.11 12.3 0.3 0.19 11.5 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF466) Zip PF02535.17 gi|257387292|ref|YP_003177065.1| - 1.4e-19 70.2 15.3 7e-19 67.9 2.4 2.7 1 1 1 2 2 2 2 ZIP Zinc transporter DUF3302 PF11742.3 gi|257387292|ref|YP_003177065.1| - 0.83 9.5 4.5 30 4.5 0.0 3.4 3 0 0 3 3 3 0 Protein of unknown function (DUF3302) LigT_PEase PF02834.11 gi|257387294|ref|YP_003177067.1| - 3.5e-23 81.3 0.1 3.1e-12 46.3 0.0 2.1 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.1 gi|257387294|ref|YP_003177067.1| - 6.2e-19 68.2 0.5 7.5e-19 67.9 0.3 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.4 gi|257387294|ref|YP_003177067.1| - 1.7e-11 44.1 0.0 2.1e-11 43.9 0.0 1.1 1 0 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain HVSL PF09749.4 gi|257387294|ref|YP_003177067.1| - 1.1e-07 31.1 0.0 1.3e-07 30.9 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised conserved protein Bac_rhodopsin PF01036.13 gi|257387295|ref|YP_003177068.1| - 0.053 12.8 0.4 0.058 12.6 0.3 1.1 1 0 0 1 1 1 0 Bacteriorhodopsin-like protein DUF1275 PF06912.6 gi|257387295|ref|YP_003177068.1| - 0.091 11.9 2.9 0.1 11.7 2.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1275) DUF3040 PF11239.3 gi|257387295|ref|YP_003177068.1| - 1 9.4 6.2 1.1 9.2 4.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) TPR_11 PF13414.1 gi|257387296|ref|YP_003177069.1| - 6.9e-25 86.4 15.1 1.4e-12 47.0 0.5 3.2 2 1 1 3 3 3 3 TPR repeat TPR_1 PF00515.23 gi|257387296|ref|YP_003177069.1| - 2.4e-22 77.5 7.0 1.2e-05 24.6 0.0 5.2 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_2 PF07719.12 gi|257387296|ref|YP_003177069.1| - 1.9e-19 67.9 17.5 2.1e-05 24.0 0.0 5.2 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_16 PF13432.1 gi|257387296|ref|YP_003177069.1| - 5.7e-17 61.8 19.2 4.6e-10 39.8 1.8 4.0 2 2 2 4 4 4 4 Tetratricopeptide repeat TPR_12 PF13424.1 gi|257387296|ref|YP_003177069.1| - 1e-14 54.1 16.5 3.3e-07 30.1 2.5 4.0 1 1 1 4 4 4 4 Tetratricopeptide repeat TPR_14 PF13428.1 gi|257387296|ref|YP_003177069.1| - 4.1e-13 48.6 21.4 4.5e-06 26.8 0.4 5.2 2 2 3 5 5 5 5 Tetratricopeptide repeat TPR_8 PF13181.1 gi|257387296|ref|YP_003177069.1| - 4.1e-11 41.8 1.7 0.0041 16.8 0.0 5.1 5 0 0 5 5 5 2 Tetratricopeptide repeat TPR_17 PF13431.1 gi|257387296|ref|YP_003177069.1| - 6.6e-11 41.5 2.4 9.6e-05 22.2 0.0 4.6 4 0 0 4 4 4 2 Tetratricopeptide repeat TPR_7 PF13176.1 gi|257387296|ref|YP_003177069.1| - 3e-10 39.0 14.9 0.0056 16.3 0.1 4.7 5 0 0 5 5 5 3 Tetratricopeptide repeat Apc3 PF12895.2 gi|257387296|ref|YP_003177069.1| - 3.6e-09 36.6 0.2 7.7e-05 22.7 0.0 2.3 2 0 0 2 2 2 2 Anaphase-promoting complex, cyclosome, subunit 3 TPR_9 PF13371.1 gi|257387296|ref|YP_003177069.1| - 2.8e-08 33.5 11.3 0.001 18.8 0.5 3.9 2 2 2 4 4 4 3 Tetratricopeptide repeat TPR_10 PF13374.1 gi|257387296|ref|YP_003177069.1| - 3.9e-07 29.7 20.1 0.00054 19.7 0.7 4.4 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_6 PF13174.1 gi|257387296|ref|YP_003177069.1| - 2.5e-06 27.5 6.5 0.87 10.1 0.0 5.0 5 0 0 5 5 5 1 Tetratricopeptide repeat TPR_19 PF14559.1 gi|257387296|ref|YP_003177069.1| - 5.2e-06 26.6 9.9 0.0005 20.3 0.0 3.8 2 2 1 3 3 3 2 Tetratricopeptide repeat TPR_4 PF07721.9 gi|257387296|ref|YP_003177069.1| - 0.00032 20.8 12.8 0.0017 18.5 0.9 4.3 4 0 0 4 4 3 1 Tetratricopeptide repeat SPOB_a PF14689.1 gi|257387296|ref|YP_003177069.1| - 0.48 10.0 2.5 33 4.1 0.8 2.9 3 0 0 3 3 3 0 Sensor_kinase_SpoOB-type, alpha-helical domain TPR_20 PF14561.1 gi|257387296|ref|YP_003177069.1| - 0.59 10.2 8.1 2.8 8.1 0.2 3.0 2 2 0 2 2 2 0 Tetratricopeptide repeat ATP-synt_E PF05680.7 gi|257387296|ref|YP_003177069.1| - 3.7 7.5 7.2 0.7 9.8 1.2 2.3 2 0 0 2 2 2 0 ATP synthase E chain DUF424 PF04242.8 gi|257387297|ref|YP_003177070.1| - 3.2e-32 110.4 0.0 3.5e-32 110.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF424) Aminotran_5 PF00266.14 gi|257387298|ref|YP_003177071.1| - 5e-149 496.0 0.1 5.7e-149 495.8 0.1 1.0 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.12 gi|257387298|ref|YP_003177071.1| - 3.4e-15 55.9 1.3 7.7e-15 54.7 1.0 1.5 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|257387298|ref|YP_003177071.1| - 1.3e-09 37.6 0.3 1.9e-09 37.0 0.2 1.4 1 1 0 1 1 1 1 Beta-eliminating lyase Pyridoxal_deC PF00282.14 gi|257387298|ref|YP_003177071.1| - 2.6e-06 26.1 0.0 1.3e-05 23.8 0.1 1.8 2 0 0 2 2 2 1 Pyridoxal-dependent decarboxylase conserved domain Cys_Met_Meta_PP PF01053.15 gi|257387298|ref|YP_003177071.1| - 1.3e-05 23.7 0.1 2.1e-05 23.0 0.1 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme SelA PF03841.8 gi|257387298|ref|YP_003177071.1| - 0.00058 18.7 0.0 0.0014 17.4 0.0 1.5 1 1 0 1 1 1 1 L-seryl-tRNA selenium transferase Peptidase_M64 PF09471.5 gi|257387299|ref|YP_003177072.1| - 0.00078 19.1 0.0 0.0011 18.6 0.0 1.2 1 0 0 1 1 1 1 IgA Peptidase M64 Reprolysin_2 PF13574.1 gi|257387299|ref|YP_003177072.1| - 0.0015 18.6 0.0 0.0025 17.8 0.0 1.3 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Peptidase_M66 PF10462.4 gi|257387299|ref|YP_003177072.1| - 0.0032 16.4 0.1 0.0043 15.9 0.1 1.1 1 0 0 1 1 1 1 Peptidase M66 Reprolysin_3 PF13582.1 gi|257387299|ref|YP_003177072.1| - 0.009 16.5 0.0 0.032 14.7 0.0 2.0 1 1 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_4 PF13583.1 gi|257387299|ref|YP_003177072.1| - 0.022 14.2 0.0 0.037 13.5 0.0 1.3 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Metallopep PF12044.3 gi|257387299|ref|YP_003177072.1| - 0.11 10.9 0.0 0.17 10.3 0.0 1.2 1 0 0 1 1 1 0 Putative peptidase family DUF502 PF04367.8 gi|257387300|ref|YP_003177073.1| - 3.4e-26 91.1 1.3 1.9e-25 88.6 0.0 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF502) TatC PF00902.13 gi|257387301|ref|YP_003177074.1| - 0.00038 19.9 0.1 0.00057 19.3 0.0 1.3 1 1 0 1 1 1 1 Sec-independent protein translocase protein (TatC) Cep57_MT_bd PF06657.8 gi|257387302|ref|YP_003177075.1| - 0.19 11.7 0.8 10 6.1 0.2 2.1 2 0 0 2 2 2 0 Centrosome microtubule-binding domain of Cep57 DNA_pol3_delta2 PF13177.1 gi|257387303|ref|YP_003177076.1| - 1.2e-11 44.5 0.0 2e-11 43.8 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase III, delta subunit Rep_fac_C PF08542.6 gi|257387303|ref|YP_003177076.1| - 1.9e-10 40.5 0.0 4e-10 39.5 0.0 1.5 1 0 0 1 1 1 1 Replication factor C C-terminal domain AAA PF00004.24 gi|257387303|ref|YP_003177076.1| - 4.1e-10 39.9 0.0 1.7e-09 37.9 0.0 2.1 2 1 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|257387303|ref|YP_003177076.1| - 4.6e-07 30.0 0.0 9.6e-07 29.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|257387303|ref|YP_003177076.1| - 3.4e-06 27.1 0.1 3.6e-05 23.8 0.0 2.5 2 1 0 2 2 2 1 AAA ATPase domain Sigma54_activat PF00158.21 gi|257387303|ref|YP_003177076.1| - 5.5e-05 22.7 0.0 0.0026 17.2 0.0 2.8 3 0 0 3 3 3 1 Sigma-54 interaction domain AAA_14 PF13173.1 gi|257387303|ref|YP_003177076.1| - 0.00013 21.8 0.0 0.0004 20.2 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|257387303|ref|YP_003177076.1| - 0.00031 21.5 0.1 0.0018 19.0 0.0 2.1 2 1 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|257387303|ref|YP_003177076.1| - 0.00072 19.2 0.1 0.044 13.5 0.0 2.6 2 0 0 2 2 2 1 Part of AAA domain T2SE PF00437.15 gi|257387303|ref|YP_003177076.1| - 0.0036 16.2 0.0 0.0099 14.8 0.0 1.7 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_18 PF13238.1 gi|257387303|ref|YP_003177076.1| - 0.0041 17.4 0.0 0.015 15.5 0.0 1.9 1 1 0 1 1 1 1 AAA domain DUF815 PF05673.8 gi|257387303|ref|YP_003177076.1| - 0.0067 15.3 0.0 0.011 14.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_10 PF12846.2 gi|257387303|ref|YP_003177076.1| - 0.011 15.1 0.0 0.27 10.6 0.0 2.2 1 1 0 1 1 1 0 AAA-like domain FtsK_SpoIIIE PF01580.13 gi|257387303|ref|YP_003177076.1| - 0.017 14.6 0.0 0.043 13.2 0.0 1.7 1 0 0 1 1 1 0 FtsK/SpoIIIE family Zeta_toxin PF06414.7 gi|257387303|ref|YP_003177076.1| - 0.026 13.6 0.0 0.083 11.9 0.0 1.8 2 0 0 2 2 2 0 Zeta toxin Bac_DnaA PF00308.13 gi|257387303|ref|YP_003177076.1| - 0.038 13.6 0.0 3.9 7.0 0.0 2.5 1 1 1 2 2 2 0 Bacterial dnaA protein Arch_ATPase PF01637.13 gi|257387303|ref|YP_003177076.1| - 0.04 13.6 0.0 0.078 12.6 0.0 1.5 1 1 0 1 1 1 0 Archaeal ATPase Mg_chelatase PF01078.16 gi|257387303|ref|YP_003177076.1| - 0.048 12.8 0.0 0.08 12.0 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Sigma54_activ_2 PF14532.1 gi|257387303|ref|YP_003177076.1| - 0.075 13.0 0.0 0.4 10.7 0.0 1.9 2 0 0 2 2 2 0 Sigma-54 interaction domain OSCP PF00213.13 gi|257387303|ref|YP_003177076.1| - 0.077 12.8 0.5 0.2 11.4 0.1 1.9 2 1 0 2 2 2 0 ATP synthase delta (OSCP) subunit UPF0079 PF02367.12 gi|257387303|ref|YP_003177076.1| - 0.13 11.8 0.0 0.24 11.0 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 Tnp_P_element_C PF12596.3 gi|257387303|ref|YP_003177076.1| - 2.3 8.5 4.2 0.85 9.9 0.4 2.0 2 1 0 3 3 2 0 87kDa Transposase DUF2892 PF11127.3 gi|257387304|ref|YP_003177077.1| - 0.4 10.5 4.6 0.64 9.8 3.2 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2892) Chlor_dismutase PF06778.7 gi|257387306|ref|YP_003177079.1| - 3.3e-52 177.0 0.5 7.3e-52 175.8 0.0 1.9 2 0 0 2 2 2 1 Chlorite dismutase ABM PF03992.11 gi|257387306|ref|YP_003177079.1| - 1.8e-11 43.8 0.9 1.8e-11 43.8 0.6 3.6 4 0 0 4 4 4 1 Antibiotic biosynthesis monooxygenase TAT_signal PF10518.4 gi|257387307|ref|YP_003177080.1| - 3.5 7.8 9.2 0.39 10.8 3.0 2.0 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence NifU_N PF01592.11 gi|257387308|ref|YP_003177081.1| - 4.3e-26 91.3 0.1 4.9e-26 91.1 0.0 1.0 1 0 0 1 1 1 1 NifU-like N terminal domain bPH_3 PF14470.1 gi|257387309|ref|YP_003177082.1| - 1.5e-05 25.1 0.0 2.5e-05 24.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial PH domain DUF4398 PF14346.1 gi|257387309|ref|YP_003177082.1| - 0.0091 16.0 16.9 1.1 9.3 0.4 4.2 3 1 1 4 4 4 3 Domain of unknown function (DUF4398) MscS_porin PF12795.2 gi|257387309|ref|YP_003177082.1| - 0.045 13.0 1.3 0.88 8.8 0.0 2.4 2 0 0 2 2 2 0 Mechanosensitive ion channel porin domain BTAD PF03704.12 gi|257387309|ref|YP_003177082.1| - 0.095 13.0 16.1 0.072 13.4 5.3 2.7 3 0 0 3 3 3 0 Bacterial transcriptional activator domain TPR_2 PF07719.12 gi|257387309|ref|YP_003177082.1| - 0.55 10.2 2.8 11 6.2 0.1 3.4 3 0 0 3 3 3 0 Tetratricopeptide repeat DDE_Tnp_IS1595 PF12762.2 gi|257387310|ref|YP_003177083.1| - 6.6e-21 74.7 0.0 9.9e-21 74.1 0.0 1.2 1 0 0 1 1 1 1 ISXO2-like transposase domain Zn_Tnp_IS1595 PF12760.2 gi|257387310|ref|YP_003177083.1| - 3.7e-10 39.4 0.9 7.9e-10 38.3 0.6 1.6 1 0 0 1 1 1 1 Transposase zinc-ribbon domain DUF2089 PF09862.4 gi|257387310|ref|YP_003177083.1| - 4e-06 26.5 0.0 5.6e-06 26.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2089) Zn_Tnp_IS1 PF03811.8 gi|257387310|ref|YP_003177083.1| - 0.00013 21.3 3.9 0.00041 19.7 2.7 1.8 1 0 0 1 1 1 1 InsA N-terminal domain HTH_23 PF13384.1 gi|257387310|ref|YP_003177083.1| - 0.0023 17.5 0.0 0.007 15.9 0.0 1.8 1 0 0 1 1 1 1 Homeodomain-like domain ADK_lid PF05191.9 gi|257387310|ref|YP_003177083.1| - 0.013 15.1 0.1 0.013 15.1 0.1 2.1 2 0 0 2 2 2 0 Adenylate kinase, active site lid HTH_29 PF13551.1 gi|257387310|ref|YP_003177083.1| - 0.032 14.3 0.0 0.12 12.4 0.0 1.9 2 0 0 2 2 2 0 Winged helix-turn helix Prok-RING_1 PF14446.1 gi|257387310|ref|YP_003177083.1| - 0.036 13.7 0.3 1.1 9.0 0.0 2.2 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 Zn-ribbon_8 PF09723.5 gi|257387310|ref|YP_003177083.1| - 0.045 13.6 2.1 9.8 6.2 0.3 2.7 2 0 0 2 2 2 0 Zinc ribbon domain zinc-ribbons_6 PF07191.7 gi|257387310|ref|YP_003177083.1| - 0.046 13.5 0.1 0.094 12.5 0.1 1.5 1 0 0 1 1 1 0 zinc-ribbons HTH_28 PF13518.1 gi|257387310|ref|YP_003177083.1| - 0.066 13.2 0.0 0.21 11.6 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain GerE PF00196.14 gi|257387310|ref|YP_003177083.1| - 0.067 12.5 0.0 0.17 11.1 0.0 1.7 2 0 0 2 2 1 0 Bacterial regulatory proteins, luxR family HTH_11 PF08279.7 gi|257387310|ref|YP_003177083.1| - 0.068 12.8 0.0 0.13 11.9 0.0 1.4 1 0 0 1 1 1 0 HTH domain HNH_5 PF14279.1 gi|257387310|ref|YP_003177083.1| - 0.083 12.9 0.1 0.19 11.7 0.0 1.7 1 0 0 1 1 1 0 HNH endonuclease zf-C4_Topoisom PF01396.14 gi|257387310|ref|YP_003177083.1| - 0.085 12.3 1.0 0.17 11.3 0.7 1.5 1 0 0 1 1 1 0 Topoisomerase DNA binding C4 zinc finger Sigma70_r4_2 PF08281.7 gi|257387310|ref|YP_003177083.1| - 0.089 12.2 0.0 0.23 10.9 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 zf-C2HC_2 PF13913.1 gi|257387310|ref|YP_003177083.1| - 0.1 12.2 0.6 0.1 12.2 0.4 2.4 2 0 0 2 2 2 0 zinc-finger of a C2HC-type Auxin_inducible PF02519.9 gi|257387310|ref|YP_003177083.1| - 0.12 12.4 0.0 0.23 11.5 0.0 1.4 1 0 0 1 1 1 0 Auxin responsive protein zf-Dof PF02701.10 gi|257387310|ref|YP_003177083.1| - 0.15 11.9 3.9 0.3 11.0 2.7 1.5 1 0 0 1 1 1 0 Dof domain, zinc finger zf-ISL3 PF14690.1 gi|257387310|ref|YP_003177083.1| - 0.37 10.8 5.1 9.1 6.4 0.1 2.9 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-C2H2_6 PF13912.1 gi|257387310|ref|YP_003177083.1| - 0.62 10.0 4.2 0.4 10.6 0.2 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger Zn_ribbon_recom PF13408.1 gi|257387310|ref|YP_003177083.1| - 3.3 8.0 6.1 7.9 6.8 4.2 1.7 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain zf-C2H2 PF00096.21 gi|257387310|ref|YP_003177083.1| - 6.3 7.3 5.5 1.2 9.5 0.4 2.4 2 0 0 2 2 1 0 Zinc finger, C2H2 type DUF3784 PF12650.2 gi|257387311|ref|YP_003177084.1| - 0.021 14.7 0.5 0.022 14.6 0.4 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF3784) DUF1206 PF06724.6 gi|257387311|ref|YP_003177084.1| - 0.076 12.7 1.0 0.076 12.7 0.7 1.7 1 1 1 2 2 2 0 Domain of Unknown Function (DUF1206) Sec20 PF03908.8 gi|257387311|ref|YP_003177084.1| - 0.21 11.3 2.3 0.77 9.5 0.1 2.0 1 1 1 2 2 2 0 Sec20 MgtE PF01769.11 gi|257387312|ref|YP_003177085.1| - 4.3e-19 69.1 7.9 4.3e-19 69.1 5.5 1.6 2 0 0 2 2 2 1 Divalent cation transporter SecD_SecF PF02355.11 gi|257387312|ref|YP_003177085.1| - 6 6.0 11.4 0.084 12.0 1.6 2.2 3 0 0 3 3 3 0 Protein export membrane protein MgtE PF01769.11 gi|257387313|ref|YP_003177086.1| - 4.8e-19 68.9 9.9 4.8e-19 68.9 6.9 1.4 2 0 0 2 2 2 1 Divalent cation transporter DUF1049 PF06305.6 gi|257387313|ref|YP_003177086.1| - 0.0031 16.9 3.0 0.0031 16.9 2.1 2.5 2 0 0 2 2 2 1 Protein of unknown function (DUF1049) DUF1158 PF06643.6 gi|257387313|ref|YP_003177086.1| - 3 8.2 7.8 2.7 8.3 0.2 2.7 2 1 0 2 2 2 0 Protein of unknown function (DUF1158) DUF4118 PF13493.1 gi|257387313|ref|YP_003177086.1| - 5.2 7.3 18.0 11 6.3 5.9 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4118) Gate PF07670.9 gi|257387314|ref|YP_003177087.1| - 0.00033 20.5 17.8 0.0016 18.3 0.8 3.0 2 2 1 3 3 3 2 Nucleoside recognition LTD PF00932.14 gi|257387316|ref|YP_003177089.1| - 1.8e-17 63.4 1.9 1.8e-17 63.4 1.3 1.6 2 0 0 2 2 2 1 Lamin Tail Domain SNase PF00565.12 gi|257387316|ref|YP_003177089.1| - 1.6e-16 60.5 0.0 2.2e-16 60.0 0.0 1.2 1 0 0 1 1 1 1 Staphylococcal nuclease homologue LPAM_1 PF08139.7 gi|257387316|ref|YP_003177089.1| - 1 9.6 4.8 1.8 8.9 3.3 1.3 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site MLTD_N PF06474.7 gi|257387316|ref|YP_003177089.1| - 1.3 9.2 4.6 2.4 8.4 3.2 1.4 1 0 0 1 1 1 0 MltD lipid attachment motif Oxidored_molyb PF00174.14 gi|257387317|ref|YP_003177090.1| - 1.7e-29 102.4 0.0 2.6e-29 101.7 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain Cytochrom_B_N PF00033.14 gi|257387317|ref|YP_003177090.1| - 1.4e-05 24.5 9.0 5.5e-05 22.6 0.3 2.2 2 0 0 2 2 2 2 Cytochrome b(N-terminal)/b6/petB DUF2339 PF10101.4 gi|257387317|ref|YP_003177090.1| - 0.00034 19.0 4.7 0.00047 18.5 3.3 1.1 1 0 0 1 1 1 1 Predicted membrane protein (DUF2339) Ni_hydr_CYTB PF01292.15 gi|257387317|ref|YP_003177090.1| - 0.0021 17.4 10.2 0.0065 15.8 1.3 2.3 1 1 1 2 2 2 2 Prokaryotic cytochrome b561 AzlD PF05437.7 gi|257387317|ref|YP_003177090.1| - 0.036 14.0 1.5 0.036 14.0 1.1 2.9 1 1 2 3 3 3 0 Branched-chain amino acid transport protein (AzlD) HAD_2 PF13419.1 gi|257387318|ref|YP_003177091.1| - 2.1e-19 70.3 1.0 2.5e-19 70.1 0.7 1.0 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|257387318|ref|YP_003177091.1| - 1.9e-07 31.7 0.9 8.7e-07 29.5 0.6 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|257387318|ref|YP_003177091.1| - 1.1e-05 25.0 0.1 3.4e-05 23.4 0.1 1.8 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.2 gi|257387318|ref|YP_003177091.1| - 0.00013 22.2 3.3 0.0002 21.6 2.3 1.4 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase RNA_binding PF01877.12 gi|257387319|ref|YP_003177092.1| - 2.4e-23 82.4 0.1 1.4e-22 79.9 0.1 2.0 1 1 0 1 1 1 1 RNA binding DUF1849 PF08904.6 gi|257387319|ref|YP_003177092.1| - 0.0098 15.2 0.0 0.14 11.4 0.0 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF1849) DUF3320 PF11784.3 gi|257387319|ref|YP_003177092.1| - 0.12 11.9 0.0 0.36 10.3 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3320) AAA_18 PF13238.1 gi|257387320|ref|YP_003177093.1| - 3.7e-11 43.4 0.0 5.7e-11 42.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|257387320|ref|YP_003177093.1| - 5.5e-09 36.8 0.1 9.6e-09 36.1 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|257387320|ref|YP_003177093.1| - 1.1e-08 35.1 0.0 1.7e-08 34.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain ADK PF00406.17 gi|257387320|ref|YP_003177093.1| - 1.3e-05 25.1 0.0 1.7e-05 24.7 0.0 1.2 1 0 0 1 1 1 1 Adenylate kinase CPT PF07931.7 gi|257387320|ref|YP_003177093.1| - 0.058 13.0 0.5 0.087 12.4 0.4 1.4 1 0 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein DUF307 PF03733.8 gi|257387322|ref|YP_003177095.1| - 6.6e-10 39.2 25.3 4.8e-05 23.7 6.2 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF307) Leader_Trp PF08255.6 gi|257387322|ref|YP_003177095.1| - 2.1 8.1 10.4 0.67 9.7 0.6 2.7 2 0 0 2 2 2 0 Trp-operon Leader Peptide polyprenyl_synt PF00348.12 gi|257387323|ref|YP_003177096.1| - 1.2e-54 184.8 0.2 1.6e-54 184.5 0.1 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase DinB_2 PF12867.2 gi|257387323|ref|YP_003177096.1| - 0.0043 17.3 1.4 0.73 10.1 0.2 2.4 2 0 0 2 2 2 2 DinB superfamily ETF_alpha PF00766.14 gi|257387324|ref|YP_003177097.1| - 5e-37 125.4 0.1 1.3e-36 124.0 0.0 1.7 2 0 0 2 2 2 1 Electron transfer flavoprotein FAD-binding domain ETF PF01012.16 gi|257387324|ref|YP_003177097.1| - 4.4e-29 101.3 5.5 7.2e-29 100.6 2.2 2.0 2 0 0 2 2 2 1 Electron transfer flavoprotein domain Glyco_trans_4_4 PF13579.1 gi|257387324|ref|YP_003177097.1| - 0.041 14.0 0.7 0.081 13.0 0.5 1.5 1 0 0 1 1 1 0 Glycosyl transferase 4-like domain DOMON PF03351.12 gi|257387324|ref|YP_003177097.1| - 0.11 12.4 0.1 0.19 11.6 0.0 1.4 1 0 0 1 1 1 0 DOMON domain ETF PF01012.16 gi|257387325|ref|YP_003177098.1| - 3.7e-36 124.3 5.9 5.6e-36 123.7 4.1 1.3 1 0 0 1 1 1 1 Electron transfer flavoprotein domain CoA_binding_2 PF13380.1 gi|257387325|ref|YP_003177098.1| - 0.048 13.8 0.2 0.13 12.4 0.1 1.9 2 0 0 2 2 2 0 CoA binding domain DUF1350 PF07082.6 gi|257387325|ref|YP_003177098.1| - 0.048 12.7 0.0 0.064 12.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1350) Lipase_GDSL_2 PF13472.1 gi|257387325|ref|YP_003177098.1| - 0.1 12.6 2.6 3.5 7.7 0.1 2.3 1 1 1 2 2 2 0 GDSL-like Lipase/Acylhydrolase family Usp PF00582.21 gi|257387325|ref|YP_003177098.1| - 1.6 8.9 9.3 2 8.6 1.5 3.2 1 1 1 2 2 2 0 Universal stress protein family HTH_24 PF13412.1 gi|257387326|ref|YP_003177099.1| - 0.00043 19.5 0.1 0.0026 17.1 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|257387326|ref|YP_003177099.1| - 0.0016 17.9 0.1 0.0077 15.7 0.0 2.0 2 0 0 2 2 2 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|257387326|ref|YP_003177099.1| - 0.014 15.0 0.0 0.036 13.7 0.0 1.6 1 0 0 1 1 1 0 MarR family DUF1628 PF07790.6 gi|257387328|ref|YP_003177101.1| - 2.9e-14 53.5 0.6 5e-14 52.8 0.4 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1628) Methyltransf_11 PF08241.7 gi|257387329|ref|YP_003177102.1| - 3.1e-26 91.6 0.0 5.1e-26 91.0 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|257387329|ref|YP_003177102.1| - 7.7e-19 67.7 0.0 9.7e-19 67.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|257387329|ref|YP_003177102.1| - 9.8e-19 67.6 0.0 1.3e-18 67.2 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|257387329|ref|YP_003177102.1| - 1.3e-17 64.0 0.0 2.1e-17 63.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|257387329|ref|YP_003177102.1| - 1e-16 60.7 0.0 1.9e-13 50.1 0.0 2.1 1 1 1 2 2 2 2 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.7 gi|257387329|ref|YP_003177102.1| - 3.7e-16 59.4 0.0 5.6e-16 58.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|257387329|ref|YP_003177102.1| - 1.8e-14 54.2 0.0 2.8e-14 53.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|257387329|ref|YP_003177102.1| - 4.1e-11 42.9 0.0 1.8e-10 40.8 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|257387329|ref|YP_003177102.1| - 2.8e-07 30.0 0.0 4e-07 29.5 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW RrnaAD PF00398.15 gi|257387329|ref|YP_003177102.1| - 3.6e-07 29.4 0.0 4.6e-07 29.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase CMAS PF02353.15 gi|257387329|ref|YP_003177102.1| - 1.8e-05 23.9 0.0 2.9e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_9 PF08003.6 gi|257387329|ref|YP_003177102.1| - 0.00026 19.7 0.0 0.00037 19.2 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) MTS PF05175.9 gi|257387329|ref|YP_003177102.1| - 0.0004 19.8 0.0 0.00078 18.8 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase small domain PCMT PF01135.14 gi|257387329|ref|YP_003177102.1| - 0.00066 19.2 0.0 0.00086 18.8 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_8 PF05148.10 gi|257387329|ref|YP_003177102.1| - 0.0038 16.8 0.0 0.024 14.2 0.0 1.9 1 1 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_29 PF03141.11 gi|257387329|ref|YP_003177102.1| - 0.0088 14.4 0.0 0.011 14.1 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_32 PF13679.1 gi|257387329|ref|YP_003177102.1| - 0.02 14.5 0.0 0.028 14.0 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain N6_N4_Mtase PF01555.13 gi|257387329|ref|YP_003177102.1| - 0.055 12.9 0.0 5 6.5 0.0 2.1 2 0 0 2 2 2 0 DNA methylase NodS PF05401.6 gi|257387329|ref|YP_003177102.1| - 0.11 11.8 0.0 0.14 11.5 0.0 1.1 1 0 0 1 1 1 0 Nodulation protein S (NodS) V-ATPase_G PF03179.10 gi|257387330|ref|YP_003177103.1| - 4.5e-07 30.1 21.3 6.7e-05 23.1 4.5 2.0 1 1 1 2 2 2 2 Vacuolar (H+)-ATPase G subunit ATP-synt_B PF00430.13 gi|257387330|ref|YP_003177103.1| - 5.6e-05 22.9 25.7 0.00011 21.9 17.8 1.6 1 1 0 1 1 1 1 ATP synthase B/B' CF(0) DUF883 PF05957.8 gi|257387330|ref|YP_003177103.1| - 0.037 14.4 19.7 0.56 10.6 4.7 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) DUF3552 PF12072.3 gi|257387330|ref|YP_003177103.1| - 0.047 12.9 28.1 15 4.6 19.5 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF3552) HrpE PF06188.7 gi|257387330|ref|YP_003177103.1| - 0.053 13.2 19.1 0.041 13.6 9.9 1.9 1 1 1 2 2 2 0 HrpE/YscL/FliH and V-type ATPase subunit E Muted PF14942.1 gi|257387330|ref|YP_003177103.1| - 0.066 13.0 12.1 0.093 12.6 8.4 1.3 1 0 0 1 1 1 0 Organelle biogenesis, Muted-like protein KfrA_N PF11740.3 gi|257387330|ref|YP_003177103.1| - 0.12 12.8 33.7 0.99 9.8 16.8 2.3 1 1 1 2 2 2 0 Plasmid replication region DNA-binding N-term Exonuc_VII_L PF02601.10 gi|257387330|ref|YP_003177103.1| - 0.17 11.0 6.1 0.19 10.8 4.2 1.0 1 0 0 1 1 1 0 Exonuclease VII, large subunit OmpH PF03938.9 gi|257387330|ref|YP_003177103.1| - 0.2 11.5 20.1 0.28 11.1 13.9 1.2 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) Vps5 PF09325.5 gi|257387330|ref|YP_003177103.1| - 0.35 10.0 12.3 0.48 9.6 8.3 1.3 1 1 0 1 1 1 0 Vps5 C terminal like DUF2317 PF10079.4 gi|257387330|ref|YP_003177103.1| - 0.37 9.3 9.2 0.4 9.2 6.4 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2317) Mitofilin PF09731.4 gi|257387330|ref|YP_003177103.1| - 0.59 8.7 16.8 0.69 8.4 11.6 1.1 1 0 0 1 1 1 0 Mitochondrial inner membrane protein YtxH PF12732.2 gi|257387330|ref|YP_003177103.1| - 1.1 9.7 13.3 4.3e+02 1.3 9.2 2.6 1 1 0 1 1 1 0 YtxH-like protein DUF342 PF03961.8 gi|257387330|ref|YP_003177103.1| - 1.2 7.4 6.6 1.2 7.4 4.6 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF342) Merozoite_SPAM PF07133.6 gi|257387330|ref|YP_003177103.1| - 1.4 8.7 22.1 3.5 7.4 15.4 1.5 1 1 0 1 1 1 0 Merozoite surface protein (SPAM) Atg14 PF10186.4 gi|257387330|ref|YP_003177103.1| - 1.9 7.3 12.2 2.1 7.1 8.5 1.0 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 AAA_11 PF13086.1 gi|257387330|ref|YP_003177103.1| - 2.4 7.6 6.2 2.8 7.4 4.3 1.1 1 0 0 1 1 1 0 AAA domain DivIVA PF05103.8 gi|257387330|ref|YP_003177103.1| - 3.1 7.8 18.8 1.3e+02 2.6 13.0 2.1 1 1 0 1 1 1 0 DivIVA protein DUF262 PF03235.9 gi|257387330|ref|YP_003177103.1| - 3.3 7.6 6.4 3.8 7.4 4.5 1.0 1 0 0 1 1 1 0 Protein of unknown function DUF262 Remorin_C PF03763.8 gi|257387330|ref|YP_003177103.1| - 3.6 7.1 17.6 0.29 10.6 3.6 2.3 1 1 1 2 2 2 0 Remorin, C-terminal region SpoIIIAH PF12685.2 gi|257387330|ref|YP_003177103.1| - 4.9 6.6 13.4 6.1 6.2 9.3 1.1 1 0 0 1 1 1 0 SpoIIIAH-like protein Mnd1 PF03962.10 gi|257387330|ref|YP_003177103.1| - 6 6.4 14.1 7.9 6.0 9.8 1.2 1 0 0 1 1 1 0 Mnd1 family ARD PF03079.9 gi|257387330|ref|YP_003177103.1| - 7.1 6.5 8.7 8.7 6.2 6.0 1.1 1 0 0 1 1 1 0 ARD/ARD' family DUF940 PF06082.6 gi|257387330|ref|YP_003177103.1| - 7.4 4.9 6.6 8.2 4.8 4.6 1.0 1 0 0 1 1 1 0 Bacterial putative lipoprotein (DUF940) Med8 PF10232.4 gi|257387330|ref|YP_003177103.1| - 9.6 5.6 13.7 14 5.1 9.5 1.4 1 1 0 1 1 1 0 Mediator of RNA polymerase II transcription complex subunit 8 LUC7 PF03194.10 gi|257387330|ref|YP_003177103.1| - 9.7 5.6 15.2 11 5.4 10.5 1.0 1 0 0 1 1 1 0 LUC7 N_terminus V_ATPase_I PF01496.14 gi|257387331|ref|YP_003177104.1| - 7.2e-62 209.3 31.0 3.4e-28 98.0 5.8 5.1 4 2 0 4 4 4 4 V-type ATPase 116kDa subunit family Prefoldin_2 PF01920.15 gi|257387331|ref|YP_003177104.1| - 0.0095 15.6 6.9 0.32 10.7 0.1 2.3 2 0 0 2 2 2 2 Prefoldin subunit DUF4140 PF13600.1 gi|257387331|ref|YP_003177104.1| - 0.014 15.8 6.5 0.54 10.7 0.5 2.4 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) Syntaxin-6_N PF09177.6 gi|257387331|ref|YP_003177104.1| - 0.018 15.3 3.5 1.2 9.5 0.2 2.4 2 0 0 2 2 2 0 Syntaxin 6, N-terminal TPR_MLP1_2 PF07926.7 gi|257387331|ref|YP_003177104.1| - 0.031 13.9 0.6 0.054 13.2 0.4 1.2 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein Cortex-I_coil PF09304.5 gi|257387331|ref|YP_003177104.1| - 0.041 13.9 3.9 3.8 7.5 0.6 2.3 2 0 0 2 2 2 0 Cortexillin I, coiled coil DASH_Dad3 PF08656.5 gi|257387331|ref|YP_003177104.1| - 0.051 13.2 2.6 0.18 11.5 0.2 2.4 2 0 0 2 2 2 0 DASH complex subunit Dad3 ATG16 PF08614.6 gi|257387331|ref|YP_003177104.1| - 0.056 13.2 1.5 2.8 7.7 0.0 2.2 2 0 0 2 2 2 0 Autophagy protein 16 (ATG16) BBS2_C PF14782.1 gi|257387331|ref|YP_003177104.1| - 0.1 11.1 0.1 2.8 6.4 0.0 2.1 2 0 0 2 2 2 0 Ciliary BBSome complex subunit 2, C-terminal TBPIP PF07106.8 gi|257387331|ref|YP_003177104.1| - 0.11 11.9 2.1 2.2 7.8 0.2 2.2 2 0 0 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF4200 PF13863.1 gi|257387331|ref|YP_003177104.1| - 0.23 11.4 4.9 0.46 10.4 0.2 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4200) DegS PF05384.6 gi|257387331|ref|YP_003177104.1| - 0.31 10.2 3.0 0.39 9.9 0.2 2.1 2 0 0 2 2 2 0 Sensor protein DegS Baculo_PEP_C PF04513.7 gi|257387331|ref|YP_003177104.1| - 0.32 10.7 1.4 7.9 6.3 0.1 2.3 2 0 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus NPV_P10 PF05531.7 gi|257387331|ref|YP_003177104.1| - 0.35 11.1 2.9 0.67 10.2 0.5 2.2 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein FlaC_arch PF05377.6 gi|257387331|ref|YP_003177104.1| - 0.44 10.4 3.7 5.8 6.8 0.1 2.8 2 1 0 2 2 2 0 Flagella accessory protein C (FlaC) Prefoldin PF02996.12 gi|257387331|ref|YP_003177104.1| - 0.49 10.0 7.8 1.3 8.7 1.4 2.3 2 0 0 2 2 2 0 Prefoldin subunit Seryl_tRNA_N PF02403.17 gi|257387331|ref|YP_003177104.1| - 0.56 10.2 4.0 5.2 7.1 0.7 2.3 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain CENP-F_leu_zip PF10473.4 gi|257387331|ref|YP_003177104.1| - 0.63 9.8 8.3 3 7.7 0.9 2.2 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Spc24 PF08286.6 gi|257387331|ref|YP_003177104.1| - 0.77 9.4 4.5 1.5 8.5 0.2 2.3 2 0 0 2 2 2 0 Spc24 subunit of Ndc80 CCDC155 PF14662.1 gi|257387331|ref|YP_003177104.1| - 1.1 8.8 9.9 3.2 7.2 5.0 2.1 1 1 1 2 2 2 0 Coiled-coil region of CCDC155 MerR-DNA-bind PF09278.6 gi|257387331|ref|YP_003177104.1| - 1.9 8.9 7.6 0.59 10.5 0.8 2.4 2 0 0 2 2 2 0 MerR, DNA binding TPD52 PF04201.10 gi|257387331|ref|YP_003177104.1| - 2.4 7.8 9.1 5.6 6.6 0.7 2.4 2 0 0 2 2 2 0 Tumour protein D52 family bZIP_1 PF00170.16 gi|257387331|ref|YP_003177104.1| - 2.5 8.0 3.8 4.8 7.2 0.1 2.2 2 0 0 2 2 2 0 bZIP transcription factor CCDC-167 PF15188.1 gi|257387331|ref|YP_003177104.1| - 2.8 7.9 7.4 12 5.9 0.8 2.4 2 0 0 2 2 2 0 Coiled-coil domain-containing protein 167 Snapin_Pallidin PF14712.1 gi|257387331|ref|YP_003177104.1| - 3.5 7.9 4.8 0.76 10.1 0.3 1.9 2 0 0 2 2 2 0 Snapin/Pallidin DivIC PF04977.10 gi|257387331|ref|YP_003177104.1| - 4.1 6.9 5.4 1.7 8.1 0.3 2.3 2 0 0 2 2 2 0 Septum formation initiator ATP-synt_C PF00137.16 gi|257387332|ref|YP_003177105.1| - 7.5e-16 57.7 12.0 7.5e-16 57.7 8.3 1.6 2 0 0 2 2 2 1 ATP synthase subunit C vATP-synt_E PF01991.13 gi|257387333|ref|YP_003177106.1| - 1.9e-42 144.7 10.9 2.2e-42 144.5 7.6 1.0 1 0 0 1 1 1 1 ATP synthase (E/31 kDa) subunit Terminase_2 PF03592.11 gi|257387333|ref|YP_003177106.1| - 0.033 14.4 9.5 0.044 14.0 6.6 1.2 1 0 0 1 1 1 0 Terminase small subunit ATP-synt_B PF00430.13 gi|257387333|ref|YP_003177106.1| - 0.093 12.5 26.4 0.1 12.3 13.7 2.2 1 1 1 2 2 2 0 ATP synthase B/B' CF(0) Apolipoprotein PF01442.13 gi|257387333|ref|YP_003177106.1| - 0.11 12.0 12.7 0.16 11.4 8.8 1.3 1 0 0 1 1 1 0 Apolipoprotein A1/A4/E domain Mt_ATP-synt_B PF05405.9 gi|257387333|ref|YP_003177106.1| - 0.13 11.6 5.2 0.21 11.0 3.6 1.4 1 0 0 1 1 1 0 Mitochondrial ATP synthase B chain precursor (ATP-synt_B) IpaD PF06511.6 gi|257387333|ref|YP_003177106.1| - 0.28 10.1 3.2 0.33 9.8 2.2 1.1 1 0 0 1 1 1 0 Invasion plasmid antigen IpaD Peptidase_U57 PF05582.7 gi|257387333|ref|YP_003177106.1| - 0.38 9.6 3.2 0.45 9.4 2.2 1.2 1 0 0 1 1 1 0 YabG peptidase U57 V_ATPase_I PF01496.14 gi|257387333|ref|YP_003177106.1| - 0.65 7.7 2.5 0.65 7.7 1.7 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family HrpE PF06188.7 gi|257387333|ref|YP_003177106.1| - 0.83 9.3 14.9 1.4 8.6 10.3 1.4 1 1 0 1 1 1 0 HrpE/YscL/FliH and V-type ATPase subunit E OmpH PF03938.9 gi|257387333|ref|YP_003177106.1| - 1.5 8.6 14.4 2.4 8.0 10.0 1.3 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) UPF0449 PF15136.1 gi|257387333|ref|YP_003177106.1| - 2.2 8.5 7.8 6.2 7.1 5.4 1.9 1 1 0 1 1 1 0 Uncharacterised protein family UPF0449 DivIVA PF05103.8 gi|257387333|ref|YP_003177106.1| - 6.9 6.7 17.5 1.6 8.7 8.0 2.3 1 1 1 2 2 2 0 DivIVA protein vATP-synt_AC39 PF01992.11 gi|257387334|ref|YP_003177107.1| - 2.3e-92 309.6 1.5 2.6e-92 309.5 1.0 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit DUF3209 PF11483.3 gi|257387334|ref|YP_003177107.1| - 0.1 12.9 1.4 0.26 11.6 0.1 2.3 2 1 1 3 3 3 0 Protein of unknown function (DUF3209) ATP-synt_F PF01990.12 gi|257387335|ref|YP_003177108.1| - 1.9e-19 69.8 0.1 2.2e-19 69.6 0.1 1.1 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit ATP-synt_ab PF00006.20 gi|257387336|ref|YP_003177109.1| - 3.6e-94 314.2 0.0 5e-94 313.7 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|257387336|ref|YP_003177109.1| - 1.4e-16 61.0 0.5 2.8e-16 60.0 0.4 1.5 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|257387336|ref|YP_003177109.1| - 1.4e-11 44.3 3.8 6.5e-11 42.2 2.5 2.3 2 0 0 2 2 2 1 ATP synthase alpha/beta family, beta-barrel domain Peptidase_M23 PF01551.17 gi|257387336|ref|YP_003177109.1| - 0.038 14.0 0.1 14 5.8 0.0 2.7 3 0 0 3 3 3 0 Peptidase family M23 AAA_22 PF13401.1 gi|257387336|ref|YP_003177109.1| - 0.11 12.5 0.0 0.22 11.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain DUF1932 PF09130.6 gi|257387336|ref|YP_003177109.1| - 1.5 8.5 5.3 1.9 8.2 0.2 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF1932) ATP-synt_ab PF00006.20 gi|257387337|ref|YP_003177110.1| - 6.8e-60 202.2 0.0 8.8e-60 201.8 0.0 1.1 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_C PF00306.22 gi|257387337|ref|YP_003177110.1| - 6.9e-16 58.7 0.3 1.4e-15 57.7 0.2 1.5 1 0 0 1 1 1 1 ATP synthase alpha/beta chain, C terminal domain ATP-synt_ab_N PF02874.18 gi|257387337|ref|YP_003177110.1| - 1.8e-13 50.4 0.8 4e-13 49.3 0.6 1.6 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.5 gi|257387337|ref|YP_003177110.1| - 0.00039 20.2 0.7 0.0012 18.6 0.5 1.9 1 0 0 1 1 1 1 HAS barrel domain Bac_rhodopsin PF01036.13 gi|257387338|ref|YP_003177111.1| - 1.1e-68 230.9 16.2 1.2e-68 230.7 11.2 1.0 1 0 0 1 1 1 1 Bacteriorhodopsin-like protein DUF4149 PF13664.1 gi|257387338|ref|YP_003177111.1| - 0.018 15.0 10.9 0.087 12.8 2.0 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4149) UCR_Fe-S_N PF10399.4 gi|257387338|ref|YP_003177111.1| - 0.051 12.7 4.5 3.5 6.8 0.4 2.9 3 0 0 3 3 3 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal DUF2637 PF10935.3 gi|257387338|ref|YP_003177111.1| - 0.18 11.7 5.8 0.29 11.0 0.3 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF2637) GpcrRhopsn4 PF10192.4 gi|257387338|ref|YP_003177111.1| - 0.9 8.6 7.0 0.47 9.6 1.4 2.2 2 0 0 2 2 2 0 Rhodopsin-like GPCR transmembrane domain DUF4131 PF13567.1 gi|257387338|ref|YP_003177111.1| - 1 8.7 12.2 3.8 6.8 3.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) DUF1673 PF07895.6 gi|257387338|ref|YP_003177111.1| - 2 7.8 5.9 0.37 10.2 0.6 2.1 2 1 0 2 2 2 0 Protein of unknown function (DUF1673) FUSC_2 PF13515.1 gi|257387339|ref|YP_003177112.1| - 0.0041 17.0 5.8 0.0041 17.0 4.1 2.8 1 1 2 3 3 3 1 Fusaric acid resistance protein-like TatC PF00902.13 gi|257387339|ref|YP_003177112.1| - 0.13 11.6 4.9 0.044 13.1 1.3 1.8 2 0 0 2 2 2 0 Sec-independent protein translocase protein (TatC) BCD PF15461.1 gi|257387340|ref|YP_003177113.1| - 3.6e-70 236.3 25.1 3.6e-70 236.3 17.4 1.6 2 0 0 2 2 2 1 Beta-carotene 15,15'-dioxygenase ATP-synt_D PF01813.12 gi|257387341|ref|YP_003177114.1| - 3.1e-61 206.3 7.9 3.9e-61 206.0 5.5 1.1 1 0 0 1 1 1 1 ATP synthase subunit D DUF572 PF04502.8 gi|257387341|ref|YP_003177114.1| - 0.013 14.7 10.2 0.018 14.3 7.0 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF572) TF_Zn_Ribbon PF08271.7 gi|257387342|ref|YP_003177115.1| - 0.02 14.2 3.5 0.16 11.3 0.1 2.7 3 0 0 3 3 3 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.1 gi|257387342|ref|YP_003177115.1| - 0.058 12.8 1.9 2.2 7.8 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Ribosomal_S27e PF01667.12 gi|257387342|ref|YP_003177115.1| - 0.073 12.6 0.1 0.073 12.6 0.1 1.5 2 0 0 2 2 2 0 Ribosomal protein S27 TFIIS_C PF01096.13 gi|257387342|ref|YP_003177115.1| - 0.29 10.7 1.0 0.67 9.6 0.0 1.9 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-ribbon_3 PF13248.1 gi|257387342|ref|YP_003177115.1| - 0.3 10.3 4.1 2.1 7.6 2.9 2.1 1 1 0 1 1 1 0 zinc-ribbon domain DNA_ligase_ZBD PF03119.11 gi|257387342|ref|YP_003177115.1| - 0.33 10.7 0.3 0.33 10.7 0.2 2.2 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain PhnA_Zn_Ribbon PF08274.7 gi|257387342|ref|YP_003177115.1| - 3.2 7.6 5.6 2.8 7.8 0.8 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon UPF0547 PF10571.4 gi|257387342|ref|YP_003177115.1| - 6 6.6 7.4 2.7 7.7 1.6 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 eRF1_2 PF03464.10 gi|257387344|ref|YP_003177117.1| - 5.2e-37 127.1 0.0 1.6e-36 125.5 0.0 1.9 2 0 0 2 2 2 1 eRF1 domain 2 eRF1_3 PF03465.10 gi|257387344|ref|YP_003177117.1| - 4.1e-26 91.4 0.3 2.2e-25 89.1 0.0 2.4 3 0 0 3 3 3 1 eRF1 domain 3 eRF1_1 PF03463.10 gi|257387344|ref|YP_003177117.1| - 1.8e-25 89.0 0.0 2.6e-25 88.5 0.0 1.2 1 0 0 1 1 1 1 eRF1 domain 1 DAO PF01266.19 gi|257387344|ref|YP_003177117.1| - 0.011 14.6 0.0 0.14 11.0 0.0 2.1 2 0 0 2 2 2 0 FAD dependent oxidoreductase Peptidase_M19 PF01244.16 gi|257387344|ref|YP_003177117.1| - 0.1 11.5 0.2 1.7 7.4 0.0 2.2 2 0 0 2 2 2 0 Membrane dipeptidase (Peptidase family M19) DUF2200 PF09966.4 gi|257387344|ref|YP_003177117.1| - 0.3 10.9 1.4 0.41 10.5 0.1 1.8 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2200) LXG PF04740.7 gi|257387344|ref|YP_003177117.1| - 1.3 8.7 6.2 1.1 9.0 1.1 2.7 3 0 0 3 3 3 0 LXG domain of WXG superfamily CbiA PF01656.18 gi|257387345|ref|YP_003177118.1| - 3.4e-32 111.4 1.8 4.3e-32 111.1 1.3 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|257387345|ref|YP_003177118.1| - 5.5e-20 71.8 0.0 8.9e-20 71.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain MipZ PF09140.6 gi|257387345|ref|YP_003177118.1| - 3.3e-09 36.2 0.2 7.2e-09 35.0 0.0 1.6 2 0 0 2 2 2 1 ATPase MipZ ArsA_ATPase PF02374.10 gi|257387345|ref|YP_003177118.1| - 7.5e-08 31.7 0.6 5.8e-06 25.5 0.4 2.8 3 0 0 3 3 3 1 Anion-transporting ATPase Fer4_NifH PF00142.13 gi|257387345|ref|YP_003177118.1| - 2.5e-07 30.1 0.6 0.00078 18.7 0.1 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ParA PF10609.4 gi|257387345|ref|YP_003177118.1| - 1.5e-06 27.9 0.6 3e-06 27.0 0.4 1.5 1 0 0 1 1 1 1 ParA/MinD ATPase like YhjQ PF06564.7 gi|257387345|ref|YP_003177118.1| - 4.5e-06 26.2 0.2 1e-05 25.0 0.1 1.4 1 1 0 1 1 1 1 YhjQ protein AAA_26 PF13500.1 gi|257387345|ref|YP_003177118.1| - 3.5e-05 23.5 4.0 6.1e-05 22.7 0.1 2.7 2 1 0 2 2 2 1 AAA domain SRP54 PF00448.17 gi|257387345|ref|YP_003177118.1| - 0.00062 19.2 3.8 0.07 12.5 0.5 3.1 3 0 0 3 3 3 1 SRP54-type protein, GTPase domain DUF1611 PF07755.6 gi|257387345|ref|YP_003177118.1| - 0.01 14.5 1.6 0.12 11.0 0.2 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF1611) MobB PF03205.9 gi|257387345|ref|YP_003177118.1| - 0.012 15.3 0.9 0.2 11.3 0.3 2.4 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B VirC1 PF07015.6 gi|257387345|ref|YP_003177118.1| - 0.023 13.7 1.1 0.095 11.7 0.3 2.0 2 0 0 2 2 2 0 VirC1 protein AAA_25 PF13481.1 gi|257387345|ref|YP_003177118.1| - 0.037 13.4 1.6 0.11 11.9 1.1 1.8 1 1 0 1 1 1 0 AAA domain ArgK PF03308.11 gi|257387345|ref|YP_003177118.1| - 0.046 12.4 9.4 0.4 9.4 6.5 2.0 1 1 0 1 1 1 0 ArgK protein APS_kinase PF01583.15 gi|257387345|ref|YP_003177118.1| - 0.047 13.3 0.1 0.082 12.5 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_17 PF13207.1 gi|257387345|ref|YP_003177118.1| - 0.073 13.8 0.1 0.61 10.9 0.0 2.4 1 1 0 2 2 2 0 AAA domain AAA_24 PF13479.1 gi|257387345|ref|YP_003177118.1| - 0.079 12.5 0.1 0.16 11.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|257387345|ref|YP_003177118.1| - 0.13 11.7 2.6 0.096 12.2 0.5 1.7 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.7 gi|257387345|ref|YP_003177118.1| - 0.22 10.5 0.5 0.45 9.5 0.1 1.6 2 0 0 2 2 2 0 Zeta toxin Rossmann-like PF10727.4 gi|257387345|ref|YP_003177118.1| - 0.35 10.6 3.0 2.9 7.6 0.2 2.4 2 0 0 2 2 2 0 Rossmann-like domain AAA_19 PF13245.1 gi|257387345|ref|YP_003177118.1| - 0.62 9.8 5.8 0.47 10.2 1.0 2.9 3 1 0 3 3 3 0 Part of AAA domain tRNA-synt_1d PF00750.14 gi|257387346|ref|YP_003177119.1| - 1.7e-55 188.2 0.0 2.3e-55 187.8 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (R) DALR_1 PF05746.10 gi|257387346|ref|YP_003177119.1| - 1e-33 115.8 0.1 5.1e-33 113.5 0.0 2.2 2 0 0 2 2 2 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.11 gi|257387346|ref|YP_003177119.1| - 1e-09 38.7 0.0 3.6e-09 37.0 0.0 1.9 2 0 0 2 2 2 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1f PF01921.13 gi|257387346|ref|YP_003177119.1| - 0.037 12.7 0.0 0.28 9.8 0.0 2.0 2 0 0 2 2 2 0 tRNA synthetases class I (K) tRNA-synt_1e PF01406.14 gi|257387346|ref|YP_003177119.1| - 0.049 12.7 0.0 0.084 11.9 0.0 1.4 1 0 0 1 1 1 0 tRNA synthetases class I (C) catalytic domain Jag_N PF14804.1 gi|257387346|ref|YP_003177119.1| - 2.7 8.0 5.6 0.5 10.4 0.2 2.5 3 0 0 3 3 3 0 Jag N-terminus Peptidase_M50 PF02163.17 gi|257387347|ref|YP_003177120.1| - 9e-25 86.7 0.0 2.3e-24 85.4 0.0 1.7 1 1 0 1 1 1 1 Peptidase family M50 PDZ_2 PF13180.1 gi|257387347|ref|YP_003177120.1| - 4.1e-15 55.4 1.6 5.1e-05 23.0 0.1 3.5 1 1 2 3 3 3 3 PDZ domain PDZ PF00595.19 gi|257387347|ref|YP_003177120.1| - 1.7e-07 31.3 1.0 2.4e-06 27.6 0.1 2.9 2 0 0 2 2 2 1 PDZ domain (Also known as DHR or GLGF) Tricorn_PDZ PF14685.1 gi|257387347|ref|YP_003177120.1| - 1.1e-06 28.2 5.5 0.0047 16.6 0.5 3.4 2 1 1 3 3 3 3 Tricorn protease PDZ domain DUF2583 PF10762.4 gi|257387347|ref|YP_003177120.1| - 0.051 13.7 3.7 0.053 13.6 0.0 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF2583) CO_deh_flav_C PF03450.12 gi|257387347|ref|YP_003177120.1| - 0.093 12.6 0.8 0.21 11.5 0.5 1.6 1 1 0 1 1 1 0 CO dehydrogenase flavoprotein C-terminal domain PDZ_1 PF12812.2 gi|257387347|ref|YP_003177120.1| - 0.13 12.1 0.1 11 5.9 0.0 3.0 3 0 0 3 3 3 0 PDZ-like domain tRNA-synt_1f PF01921.13 gi|257387348|ref|YP_003177121.1| - 5.6e-98 327.9 0.0 8.1e-98 327.4 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class I (K) tRNA-synt_1g PF09334.6 gi|257387348|ref|YP_003177121.1| - 2.2e-07 29.8 0.0 3.8e-05 22.5 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.14 gi|257387348|ref|YP_003177121.1| - 0.052 12.6 0.0 0.67 9.0 0.0 2.4 3 0 0 3 3 3 0 tRNA synthetases class I (C) catalytic domain AA_kinase PF00696.23 gi|257387349|ref|YP_003177122.1| - 1.2e-30 106.8 1.8 1.5e-30 106.5 1.3 1.1 1 0 0 1 1 1 1 Amino acid kinase family BMC PF00936.14 gi|257387349|ref|YP_003177122.1| - 0.026 14.2 0.9 0.1 12.2 0.0 2.3 2 0 0 2 2 2 0 BMC domain Peptidase_M50 PF02163.17 gi|257387351|ref|YP_003177124.1| - 4.8e-20 71.3 4.1 8.9e-19 67.1 1.3 3.0 2 1 0 2 2 2 1 Peptidase family M50 DUF1212 PF06738.7 gi|257387351|ref|YP_003177124.1| - 1.1 8.6 9.8 1.2 8.5 0.5 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF1212) AIRS PF00586.19 gi|257387352|ref|YP_003177125.1| - 6e-16 58.4 4.1 6e-16 58.4 2.8 1.7 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.17 gi|257387352|ref|YP_003177125.1| - 7.7e-11 42.2 0.1 1.2e-10 41.6 0.1 1.2 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain UPF0104 PF03706.8 gi|257387353|ref|YP_003177126.1| - 3.3e-32 111.9 37.9 4.2e-32 111.5 26.3 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0104) Ribosomal_S19e PF01090.14 gi|257387354|ref|YP_003177127.1| - 1e-48 164.3 0.0 1.2e-48 164.1 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e dsDNA_bind PF01984.15 gi|257387355|ref|YP_003177128.1| - 2.2e-29 101.5 16.0 2.6e-29 101.3 11.1 1.1 1 0 0 1 1 1 1 Double-stranded DNA-binding domain PCI PF01399.22 gi|257387355|ref|YP_003177128.1| - 0.024 14.9 0.5 0.049 13.9 0.3 1.8 1 1 0 1 1 1 0 PCI domain Pex19 PF04614.7 gi|257387355|ref|YP_003177128.1| - 0.17 11.5 9.5 0.19 11.2 6.6 1.1 1 0 0 1 1 1 0 Pex19 protein family DOR PF14839.1 gi|257387355|ref|YP_003177128.1| - 2.7 7.6 6.8 3.5 7.2 4.7 1.2 1 0 0 1 1 1 0 DOR family DUF217 PF02697.9 gi|257387355|ref|YP_003177128.1| - 3 8.1 10.1 17 5.7 3.5 2.7 2 1 0 2 2 2 0 Uncharacterized ACR, COG1753 GvpL_GvpF PF06386.6 gi|257387355|ref|YP_003177128.1| - 3.4 7.1 8.5 4 6.9 5.9 1.2 1 0 0 1 1 1 0 Gas vesicle synthesis protein GvpL/GvpF ATP_bind_4 PF01902.12 gi|257387356|ref|YP_003177129.1| - 0.039 13.3 0.0 0.073 12.4 0.0 1.4 1 0 0 1 1 1 0 ATP-binding region HHH_5 PF14520.1 gi|257387356|ref|YP_003177129.1| - 0.045 13.9 0.0 0.19 11.9 0.0 2.1 1 1 0 1 1 1 0 Helix-hairpin-helix domain QueC PF06508.8 gi|257387356|ref|YP_003177129.1| - 0.087 12.0 0.0 0.12 11.6 0.0 1.3 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC tRNA-synt_His PF13393.1 gi|257387357|ref|YP_003177130.1| - 2.4e-55 187.7 0.1 2.9e-55 187.5 0.0 1.1 1 0 0 1 1 1 1 Histidyl-tRNA synthetase tRNA-synt_2b PF00587.20 gi|257387357|ref|YP_003177130.1| - 2.5e-21 76.0 0.0 3.8e-21 75.4 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|257387357|ref|YP_003177130.1| - 2e-13 50.1 0.0 5e-13 48.8 0.0 1.6 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2d PF01409.15 gi|257387357|ref|YP_003177130.1| - 4e-05 22.9 0.1 7.4e-05 22.0 0.0 1.4 1 1 0 1 1 1 1 tRNA synthetases class II core domain (F) SHOCT PF09851.4 gi|257387358|ref|YP_003177131.1| - 3.3e-09 35.8 1.9 6.1e-09 35.0 1.3 1.5 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.6 gi|257387358|ref|YP_003177131.1| - 0.00029 20.5 0.1 0.00047 19.8 0.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1707) SAGA-Tad1 PF12767.2 gi|257387358|ref|YP_003177131.1| - 0.061 12.9 0.1 0.084 12.5 0.1 1.1 1 0 0 1 1 1 0 Transcriptional regulator of RNA polII, SAGA, subunit Acetyltransf_1 PF00583.19 gi|257387359|ref|YP_003177132.1| - 2.7e-14 52.9 0.1 5.4e-14 51.9 0.1 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|257387359|ref|YP_003177132.1| - 3.1e-09 36.9 0.1 3.9e-09 36.6 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|257387359|ref|YP_003177132.1| - 2.8e-07 30.5 0.0 3.8e-07 30.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|257387359|ref|YP_003177132.1| - 3.4e-07 30.5 0.0 4.3e-07 30.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|257387359|ref|YP_003177132.1| - 3.7e-06 26.9 0.0 4.7e-06 26.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|257387359|ref|YP_003177132.1| - 5.3e-06 26.3 0.0 4.9e-05 23.1 0.0 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|257387359|ref|YP_003177132.1| - 8.2e-05 22.2 0.0 0.00014 21.5 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.1 gi|257387359|ref|YP_003177132.1| - 0.017 15.0 0.1 0.023 14.5 0.1 1.4 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain PseudoU_synth_1 PF01416.15 gi|257387360|ref|YP_003177133.1| - 6.6e-21 74.7 0.0 2.8e-12 46.9 0.0 2.2 2 0 0 2 2 2 2 tRNA pseudouridine synthase Peptidase_M3 PF01432.15 gi|257387361|ref|YP_003177134.1| - 1.4e-64 218.8 0.9 2.7e-64 217.9 0.6 1.5 1 0 0 1 1 1 1 Peptidase family M3 Peptidase_M3_N PF08439.5 gi|257387361|ref|YP_003177134.1| - 4.3e-20 71.5 0.2 2.4e-19 69.1 0.2 2.4 2 0 0 2 2 2 1 Oligopeptidase F Reprolysin_4 PF13583.1 gi|257387361|ref|YP_003177134.1| - 0.0065 16.0 0.7 0.22 11.0 0.0 2.4 2 0 0 2 2 2 1 Metallo-peptidase family M12B Reprolysin-like Peptidase_MA_2 PF13485.1 gi|257387361|ref|YP_003177134.1| - 0.0088 16.0 5.1 0.02 14.9 1.2 2.9 2 1 0 2 2 2 1 Peptidase MA superfamily Peptidase_M64 PF09471.5 gi|257387361|ref|YP_003177134.1| - 0.022 14.3 1.9 0.047 13.3 1.3 1.5 1 0 0 1 1 1 0 IgA Peptidase M64 Reprolysin_3 PF13582.1 gi|257387361|ref|YP_003177134.1| - 0.022 15.2 0.3 0.2 12.1 0.0 2.5 2 0 0 2 2 2 0 Metallo-peptidase family M12B Reprolysin-like RNase_E_G PF10150.4 gi|257387361|ref|YP_003177134.1| - 0.089 12.0 0.1 0.18 10.9 0.1 1.5 1 0 0 1 1 1 0 Ribonuclease E/G family Reprolysin_5 PF13688.1 gi|257387361|ref|YP_003177134.1| - 0.092 12.6 0.0 0.28 11.0 0.0 1.8 1 0 0 1 1 1 0 Metallo-peptidase family M12 FUSC PF04632.7 gi|257387361|ref|YP_003177134.1| - 8 4.7 6.8 0.88 7.9 1.5 1.7 2 0 0 2 2 2 0 Fusaric acid resistance protein family AAA PF00004.24 gi|257387362|ref|YP_003177135.1| - 7.2e-44 149.1 0.1 1.7e-43 147.9 0.1 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_2 PF07724.9 gi|257387362|ref|YP_003177135.1| - 2.5e-08 34.0 0.0 6.4e-08 32.6 0.0 1.7 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.7 gi|257387362|ref|YP_003177135.1| - 5.3e-08 32.1 0.4 3.6e-07 29.4 0.0 2.2 2 1 1 3 3 3 1 Holliday junction DNA helicase ruvB N-terminus AAA_5 PF07728.9 gi|257387362|ref|YP_003177135.1| - 4.2e-07 29.7 1.6 3.6e-06 26.7 0.1 2.8 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.1 gi|257387362|ref|YP_003177135.1| - 9.3e-07 29.0 2.5 3.2e-05 23.9 0.3 3.2 2 1 0 2 2 2 1 AAA ATPase domain AAA_17 PF13207.1 gi|257387362|ref|YP_003177135.1| - 2.4e-06 28.3 1.2 1.3e-05 26.0 0.0 2.3 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|257387362|ref|YP_003177135.1| - 2.5e-06 27.6 1.5 8.4e-05 22.7 0.1 2.7 2 1 0 2 2 1 1 AAA domain AAA_33 PF13671.1 gi|257387362|ref|YP_003177135.1| - 0.00018 21.4 0.4 0.00076 19.3 0.1 2.4 2 1 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|257387362|ref|YP_003177135.1| - 0.0003 20.4 0.1 0.00084 19.0 0.1 1.7 1 0 0 1 1 1 1 Part of AAA domain TIP49 PF06068.8 gi|257387362|ref|YP_003177135.1| - 0.0003 19.6 0.1 0.00074 18.3 0.0 1.6 1 1 0 1 1 1 1 TIP49 C-terminus AAA_14 PF13173.1 gi|257387362|ref|YP_003177135.1| - 0.00042 20.2 0.0 0.00098 19.0 0.0 1.6 1 0 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|257387362|ref|YP_003177135.1| - 0.0007 19.2 0.1 0.021 14.4 0.0 2.4 2 0 0 2 2 2 1 NACHT domain DUF815 PF05673.8 gi|257387362|ref|YP_003177135.1| - 0.00079 18.4 0.0 0.0014 17.6 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_18 PF13238.1 gi|257387362|ref|YP_003177135.1| - 0.001 19.3 0.3 0.012 15.8 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_28 PF13521.1 gi|257387362|ref|YP_003177135.1| - 0.0011 18.9 0.1 0.0034 17.3 0.0 2.0 1 1 0 1 1 1 1 AAA domain NTPase_1 PF03266.10 gi|257387362|ref|YP_003177135.1| - 0.0015 18.2 2.4 0.12 12.0 0.2 3.0 2 2 0 2 2 2 1 NTPase Mg_chelatase PF01078.16 gi|257387362|ref|YP_003177135.1| - 0.0019 17.4 0.0 0.0046 16.1 0.0 1.6 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI IstB_IS21 PF01695.12 gi|257387362|ref|YP_003177135.1| - 0.0021 17.4 0.0 0.004 16.5 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein Zeta_toxin PF06414.7 gi|257387362|ref|YP_003177135.1| - 0.0024 17.0 0.0 0.005 15.9 0.0 1.6 1 0 0 1 1 1 1 Zeta toxin Sigma54_activat PF00158.21 gi|257387362|ref|YP_003177135.1| - 0.0029 17.0 0.2 0.042 13.3 0.0 2.4 2 1 0 2 2 2 1 Sigma-54 interaction domain Rootletin PF15035.1 gi|257387362|ref|YP_003177135.1| - 0.0035 17.3 1.8 0.009 16.0 1.2 1.6 1 0 0 1 1 1 1 Ciliary rootlet component, centrosome cohesion Sec3_C PF09763.4 gi|257387362|ref|YP_003177135.1| - 0.012 13.8 0.6 0.018 13.2 0.4 1.2 1 0 0 1 1 1 0 Exocyst complex component Sec3 AAA_3 PF07726.6 gi|257387362|ref|YP_003177135.1| - 0.012 15.1 0.0 0.035 13.7 0.0 1.8 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.17 gi|257387362|ref|YP_003177135.1| - 0.025 14.7 0.0 0.068 13.3 0.0 1.8 2 0 0 2 2 1 0 RNA helicase NB-ARC PF00931.17 gi|257387362|ref|YP_003177135.1| - 0.028 13.3 0.0 0.053 12.3 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain AAA_23 PF13476.1 gi|257387362|ref|YP_003177135.1| - 0.036 14.3 0.2 6.5 7.0 0.0 2.5 2 0 0 2 2 2 0 AAA domain CPT PF07931.7 gi|257387362|ref|YP_003177135.1| - 0.037 13.6 0.0 0.073 12.6 0.0 1.6 1 0 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein Sigma54_activ_2 PF14532.1 gi|257387362|ref|YP_003177135.1| - 0.037 14.0 0.0 0.084 12.9 0.0 1.7 1 1 0 1 1 1 0 Sigma-54 interaction domain Torsin PF06309.6 gi|257387362|ref|YP_003177135.1| - 0.042 13.7 0.0 0.078 12.8 0.0 1.4 1 0 0 1 1 1 0 Torsin DUF904 PF06005.7 gi|257387362|ref|YP_003177135.1| - 0.045 14.0 0.9 0.12 12.7 0.3 2.0 2 0 0 2 2 1 0 Protein of unknown function (DUF904) AAA_11 PF13086.1 gi|257387362|ref|YP_003177135.1| - 0.048 13.2 0.0 0.16 11.4 0.0 1.9 2 0 0 2 2 2 0 AAA domain ABC_tran PF00005.22 gi|257387362|ref|YP_003177135.1| - 0.072 13.3 0.2 0.21 11.8 0.0 2.0 2 1 0 2 2 1 0 ABC transporter PhoH PF02562.11 gi|257387362|ref|YP_003177135.1| - 0.073 12.2 0.0 0.17 11.1 0.0 1.6 1 0 0 1 1 1 0 PhoH-like protein ApoO PF09769.4 gi|257387362|ref|YP_003177135.1| - 0.074 12.7 0.0 7.3 6.2 0.0 2.3 2 0 0 2 2 2 0 Apolipoprotein O HAUS-augmin3 PF14932.1 gi|257387362|ref|YP_003177135.1| - 0.081 12.0 1.6 0.076 12.1 0.2 1.6 2 0 0 2 2 1 0 HAUS augmin-like complex subunit 3 DUF730 PF05325.6 gi|257387362|ref|YP_003177135.1| - 0.096 12.4 0.7 0.73 9.6 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF730) KaiC PF06745.8 gi|257387362|ref|YP_003177135.1| - 0.11 11.6 2.2 0.61 9.1 0.0 2.6 2 1 0 3 3 3 0 KaiC Bac_DnaA PF00308.13 gi|257387362|ref|YP_003177135.1| - 0.11 12.1 0.4 1.6 8.2 0.0 2.6 3 0 0 3 3 2 0 Bacterial dnaA protein Macoilin PF09726.4 gi|257387362|ref|YP_003177135.1| - 0.11 10.7 0.4 0.16 10.2 0.3 1.1 1 0 0 1 1 1 0 Transmembrane protein DUF1978 PF09321.5 gi|257387362|ref|YP_003177135.1| - 0.11 11.8 7.7 0.028 13.8 3.0 1.6 2 0 0 2 2 1 0 Domain of unknown function (DUF1978) bZIP_1 PF00170.16 gi|257387362|ref|YP_003177135.1| - 0.12 12.3 1.0 0.52 10.3 0.1 2.3 1 1 1 2 2 2 0 bZIP transcription factor Parvo_NS1 PF01057.12 gi|257387362|ref|YP_003177135.1| - 0.15 10.9 0.0 0.27 10.0 0.0 1.4 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 AAA_25 PF13481.1 gi|257387362|ref|YP_003177135.1| - 0.15 11.4 9.2 0.28 10.5 0.1 3.9 2 1 2 5 5 5 0 AAA domain DUF4140 PF13600.1 gi|257387362|ref|YP_003177135.1| - 0.23 11.9 3.0 0.64 10.4 0.3 2.8 2 1 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) HALZ PF02183.13 gi|257387362|ref|YP_003177135.1| - 0.5 10.1 1.9 9.6 6.0 0.0 2.6 2 0 0 2 2 2 0 Homeobox associated leucine zipper CENP-Q PF13094.1 gi|257387362|ref|YP_003177135.1| - 0.81 9.6 4.8 1.6 8.7 2.3 2.2 2 1 0 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit DMPK_coil PF08826.5 gi|257387362|ref|YP_003177135.1| - 4.2 7.3 10.4 0.25 11.2 1.6 3.0 4 0 0 4 4 3 0 DMPK coiled coil domain like Usp PF00582.21 gi|257387363|ref|YP_003177136.1| - 3.1e-29 101.9 1.0 3.4e-29 101.8 0.7 1.0 1 0 0 1 1 1 1 Universal stress protein family PASTA PF03793.14 gi|257387363|ref|YP_003177136.1| - 0.042 13.4 2.2 2.1 8.0 0.1 2.8 2 1 1 3 3 3 0 PASTA domain Radical_SAM PF04055.16 gi|257387363|ref|YP_003177136.1| - 0.086 13.0 0.0 0.11 12.6 0.0 1.2 1 0 0 1 1 1 0 Radical SAM superfamily DNA_photolyase PF00875.13 gi|257387363|ref|YP_003177136.1| - 0.13 11.9 0.0 0.31 10.7 0.0 1.7 1 1 0 1 1 1 0 DNA photolyase PvlArgDC PF01862.11 gi|257387364|ref|YP_003177137.1| - 4.2e-26 91.5 0.0 4.7e-26 91.3 0.0 1.0 1 0 0 1 1 1 1 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) BMC PF00936.14 gi|257387364|ref|YP_003177137.1| - 0.019 14.5 0.8 0.076 12.6 0.0 2.2 1 1 1 2 2 2 0 BMC domain DUF4232 PF14016.1 gi|257387364|ref|YP_003177137.1| - 0.07 12.7 0.2 0.094 12.3 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4232) DUF3945 PF13101.1 gi|257387365|ref|YP_003177138.1| - 0.006 15.8 0.0 0.99 8.7 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF3945) Bac_export_3 PF01313.14 gi|257387366|ref|YP_003177139.1| - 0.97 9.1 4.0 1.3 8.7 2.8 1.2 1 0 0 1 1 1 0 Bacterial export proteins, family 3 GTP_EFTU PF00009.22 gi|257387367|ref|YP_003177140.1| - 9.3e-31 106.7 0.0 9.4e-30 103.4 0.0 2.1 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain IF-2 PF11987.3 gi|257387367|ref|YP_003177140.1| - 9.3e-23 80.1 0.7 7.3e-22 77.3 0.1 2.7 2 0 0 2 2 2 1 Translation-initiation factor 2 GTP_EFTU_D4 PF14578.1 gi|257387367|ref|YP_003177140.1| - 7.8e-14 51.0 0.0 3e-13 49.2 0.0 2.0 1 0 0 1 1 1 1 Elongation factor Tu domain 4 GTP_EFTU_D2 PF03144.20 gi|257387367|ref|YP_003177140.1| - 1.7e-13 50.4 5.3 5.8e-09 35.9 0.2 3.1 2 0 0 2 2 2 2 Elongation factor Tu domain 2 MMR_HSR1 PF01926.18 gi|257387367|ref|YP_003177140.1| - 1.6e-06 28.0 0.0 3.5e-06 26.9 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase Miro PF08477.8 gi|257387367|ref|YP_003177140.1| - 0.00093 19.6 0.0 0.0022 18.4 0.0 1.6 1 0 0 1 1 1 1 Miro-like protein ATP_bind_1 PF03029.12 gi|257387367|ref|YP_003177140.1| - 0.00093 18.7 0.0 0.002 17.6 0.0 1.6 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein Dynamin_N PF00350.18 gi|257387367|ref|YP_003177140.1| - 0.0019 18.0 0.4 0.15 11.8 0.1 2.6 2 0 0 2 2 2 1 Dynamin family MobB PF03205.9 gi|257387367|ref|YP_003177140.1| - 0.057 13.1 0.1 0.16 11.6 0.1 1.8 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Copper-bind PF00127.15 gi|257387368|ref|YP_003177141.1| - 1.3e-15 57.4 0.0 1.8e-15 56.9 0.0 1.2 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family DUF605 PF04652.11 gi|257387368|ref|YP_003177141.1| - 2.7 7.2 6.4 3 7.1 4.5 1.1 1 0 0 1 1 1 0 Vta1 like PRC PF05239.11 gi|257387369|ref|YP_003177142.1| - 8.2e-12 44.8 0.1 9.1e-12 44.6 0.0 1.0 1 0 0 1 1 1 1 PRC-barrel domain DUF4411 PF14367.1 gi|257387370|ref|YP_003177143.1| - 0.00044 19.9 0.1 0.18 11.5 0.0 2.2 1 1 1 2 2 2 2 Domain of unknown function (DUF4411) Rad50_zn_hook PF04423.9 gi|257387370|ref|YP_003177143.1| - 0.00058 19.2 3.5 0.13 11.7 0.2 3.0 2 1 1 3 3 3 2 Rad50 zinc hook motif DZR PF12773.2 gi|257387370|ref|YP_003177143.1| - 0.0039 16.9 0.6 0.0061 16.3 0.4 1.3 1 0 0 1 1 1 1 Double zinc ribbon zf-C3HC4_3 PF13920.1 gi|257387370|ref|YP_003177143.1| - 0.015 14.9 0.8 0.022 14.4 0.6 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Zn-ribbon_8 PF09723.5 gi|257387370|ref|YP_003177143.1| - 0.028 14.3 4.5 0.42 10.5 3.1 2.3 1 1 0 1 1 1 0 Zinc ribbon domain UPF0278 PF08745.6 gi|257387370|ref|YP_003177143.1| - 0.037 13.2 0.1 0.061 12.5 0.1 1.5 2 0 0 2 2 2 0 UPF0278 family HypA PF01155.14 gi|257387370|ref|YP_003177143.1| - 0.051 13.2 1.8 0.11 12.1 1.3 1.8 1 1 0 1 1 1 0 Hydrogenase expression/synthesis hypA family DNA_ligase_ZBD PF03119.11 gi|257387370|ref|YP_003177143.1| - 0.074 12.7 1.4 0.21 11.2 0.1 2.3 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Nudix_N_2 PF14803.1 gi|257387370|ref|YP_003177143.1| - 0.11 12.1 3.6 12 5.7 0.1 3.2 3 0 0 3 3 3 0 Nudix N-terminal PIN PF01850.16 gi|257387370|ref|YP_003177143.1| - 0.15 12.4 0.5 1.1 9.5 0.3 2.0 1 1 0 1 1 1 0 PIN domain zf-C2H2 PF00096.21 gi|257387370|ref|YP_003177143.1| - 0.26 11.6 3.4 2.6 8.5 0.2 2.3 1 1 1 2 2 2 0 Zinc finger, C2H2 type zf-ribbon_3 PF13248.1 gi|257387370|ref|YP_003177143.1| - 0.3 10.3 2.2 0.5 9.6 1.5 1.4 1 0 0 1 1 1 0 zinc-ribbon domain zf-C2H2_4 PF13894.1 gi|257387370|ref|YP_003177143.1| - 0.63 10.5 2.2 16 6.0 0.1 2.3 1 1 1 2 2 2 0 C2H2-type zinc finger zf-C2HC_2 PF13913.1 gi|257387370|ref|YP_003177143.1| - 0.84 9.3 8.4 0.26 10.9 0.6 2.3 2 0 0 2 2 2 0 zinc-finger of a C2HC-type TF_Zn_Ribbon PF08271.7 gi|257387370|ref|YP_003177143.1| - 7.8 5.9 8.7 9 5.7 0.4 3.2 2 1 1 3 3 3 0 TFIIB zinc-binding RHH_1 PF01402.16 gi|257387371|ref|YP_003177144.1| - 7.3e-05 22.4 0.1 8.1e-05 22.3 0.1 1.1 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family IF2_N PF04760.10 gi|257387371|ref|YP_003177144.1| - 0.0035 16.9 0.0 0.0049 16.4 0.0 1.3 1 1 0 1 1 1 1 Translation initiation factor IF-2, N-terminal region DUF3867 PF12983.2 gi|257387371|ref|YP_003177144.1| - 0.091 12.7 0.0 0.091 12.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3867) DUF3791 PF12668.2 gi|257387371|ref|YP_003177144.1| - 0.095 12.3 0.0 0.11 12.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3791) DUF3562 PF12085.3 gi|257387371|ref|YP_003177144.1| - 0.11 12.2 0.1 0.12 12.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3562) Abi PF02517.11 gi|257387372|ref|YP_003177145.1| - 2.9e-20 72.1 4.3 2.9e-20 72.1 3.0 2.2 2 1 0 2 2 2 1 CAAX protease self-immunity OCIA PF07051.6 gi|257387372|ref|YP_003177145.1| - 1.5 8.2 4.2 4.5 6.6 0.1 2.9 2 1 1 3 3 3 0 Ovarian carcinoma immunoreactive antigen (OCIA) PGI PF00342.14 gi|257387373|ref|YP_003177146.1| - 6e-55 186.5 0.0 8.5e-55 186.0 0.0 1.1 1 0 0 1 1 1 1 Phosphoglucose isomerase DUF4199 PF13858.1 gi|257387374|ref|YP_003177147.1| - 7.8 6.4 10.4 8.2 6.3 5.1 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF4199) SecD_SecF PF02355.11 gi|257387376|ref|YP_003177149.1| - 4.6e-29 100.9 14.1 4.6e-29 100.9 9.8 1.8 2 0 0 2 2 2 1 Protein export membrane protein Sec_GG PF07549.9 gi|257387376|ref|YP_003177149.1| - 8.5e-06 24.7 0.0 2.3e-05 23.3 0.0 1.8 1 0 0 1 1 1 1 SecD/SecF GG Motif DUF1212 PF06738.7 gi|257387376|ref|YP_003177149.1| - 0.0078 15.7 2.6 0.0078 15.7 1.8 2.4 3 0 0 3 3 3 1 Protein of unknown function (DUF1212) SecD_SecF PF02355.11 gi|257387377|ref|YP_003177150.1| - 2.4e-17 62.7 5.7 5e-17 61.6 3.9 1.4 1 0 0 1 1 1 1 Protein export membrane protein MMPL PF03176.10 gi|257387377|ref|YP_003177150.1| - 5.1e-05 22.1 7.8 5.1e-05 22.1 5.4 1.9 2 0 0 2 2 2 1 MMPL family Arg_repressor PF01316.16 gi|257387377|ref|YP_003177150.1| - 0.04 13.4 0.6 0.3 10.6 0.1 2.4 2 0 0 2 2 2 0 Arginine repressor, DNA binding domain PepSY_2 PF13670.1 gi|257387377|ref|YP_003177150.1| - 0.24 11.3 0.1 0.24 11.3 0.1 2.3 2 0 0 2 2 2 0 Peptidase propeptide and YPEB domain RNase_HII PF01351.13 gi|257387378|ref|YP_003177151.1| - 3.8e-35 121.3 0.0 4.4e-35 121.1 0.0 1.0 1 0 0 1 1 1 1 Ribonuclease HII eIF-5_eIF-2B PF01873.12 gi|257387379|ref|YP_003177152.1| - 1.8e-26 92.2 0.0 2.5e-26 91.7 0.0 1.2 1 0 0 1 1 1 1 Domain found in IF2B/IF5 TRAM PF01938.15 gi|257387379|ref|YP_003177152.1| - 1.6e-09 37.4 0.5 2.4e-09 36.8 0.4 1.3 1 0 0 1 1 1 1 TRAM domain DUF2387 PF09526.5 gi|257387379|ref|YP_003177152.1| - 0.027 14.3 0.5 0.067 13.1 0.3 1.7 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) DNA_RNApol_7kD PF03604.8 gi|257387379|ref|YP_003177152.1| - 0.39 10.2 2.5 8.3 5.9 2.2 2.2 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Lar_restr_allev PF14354.1 gi|257387379|ref|YP_003177152.1| - 0.42 10.9 2.1 7.3 6.9 0.6 2.2 1 1 1 2 2 2 0 Restriction alleviation protein Lar zf-ribbon_3 PF13248.1 gi|257387379|ref|YP_003177152.1| - 1.3 8.2 4.0 20 4.5 0.2 2.3 1 1 1 2 2 2 0 zinc-ribbon domain DUF4397 PF14344.1 gi|257387380|ref|YP_003177153.1| - 5.3e-49 165.6 22.3 7e-32 110.3 6.3 2.4 1 1 1 2 2 2 2 Domain of unknown function (DUF4397) AlgF PF11182.3 gi|257387380|ref|YP_003177153.1| - 0.00031 20.4 4.8 0.018 14.7 1.1 2.3 2 0 0 2 2 2 2 Alginate O-acetyl transferase AlgF DUF4458 PF14660.1 gi|257387380|ref|YP_003177153.1| - 0.046 13.7 0.1 8.8 6.3 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4458) CSD PF00313.17 gi|257387381|ref|YP_003177154.1| - 3.6e-19 68.3 0.3 4e-19 68.1 0.2 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain S1-like PF14444.1 gi|257387381|ref|YP_003177154.1| - 0.019 14.6 1.2 0.028 14.1 0.8 1.4 1 1 0 1 1 1 0 S1-like OB_RNB PF08206.6 gi|257387381|ref|YP_003177154.1| - 0.039 13.4 2.6 0.054 13.0 1.8 1.3 1 0 0 1 1 1 0 Ribonuclease B OB domain NAD_binding_4 PF07993.7 gi|257387382|ref|YP_003177155.1| - 4.7e-49 166.5 0.0 5.7e-49 166.2 0.0 1.1 1 0 0 1 1 1 1 Male sterility protein Epimerase PF01370.16 gi|257387382|ref|YP_003177155.1| - 1.1e-19 70.8 0.0 1.7e-19 70.2 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|257387382|ref|YP_003177155.1| - 3.4e-14 52.2 0.0 4.5e-14 51.8 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.1 gi|257387382|ref|YP_003177155.1| - 2.1e-09 37.6 0.4 3.8e-09 36.8 0.2 1.4 1 1 0 1 1 1 1 NADH(P)-binding RmlD_sub_bind PF04321.12 gi|257387382|ref|YP_003177155.1| - 2.5e-06 26.5 0.1 3.8e-06 25.9 0.1 1.4 1 1 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.10 gi|257387382|ref|YP_003177155.1| - 0.0016 17.4 0.0 0.0025 16.7 0.0 1.2 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein KR PF08659.5 gi|257387382|ref|YP_003177155.1| - 0.0018 17.9 0.4 0.0042 16.7 0.3 1.7 1 1 0 1 1 1 1 KR domain adh_short PF00106.20 gi|257387382|ref|YP_003177155.1| - 0.23 11.3 2.5 0.16 11.8 0.2 1.9 2 0 0 2 2 2 0 short chain dehydrogenase Aldedh PF00171.17 gi|257387383|ref|YP_003177156.1| - 1.7e-141 471.6 0.0 2e-141 471.4 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.9 gi|257387383|ref|YP_003177156.1| - 0.00023 19.9 0.0 0.00036 19.3 0.0 1.2 1 0 0 1 1 1 1 Acyl-CoA reductase (LuxC) Glyoxalase_2 PF12681.2 gi|257387383|ref|YP_003177156.1| - 0.1 13.2 0.3 4.9 7.8 0.1 2.6 2 0 0 2 2 2 0 Glyoxalase-like domain DS PF01916.12 gi|257387384|ref|YP_003177157.1| - 5.9e-77 258.7 0.0 7e-77 258.4 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase AA_kinase PF00696.23 gi|257387384|ref|YP_003177157.1| - 0.068 12.6 0.0 0.093 12.2 0.0 1.3 1 0 0 1 1 1 0 Amino acid kinase family PRK PF00485.13 gi|257387385|ref|YP_003177158.1| - 1.5e-43 148.6 0.0 1.8e-43 148.3 0.0 1.1 1 0 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family AAA_17 PF13207.1 gi|257387385|ref|YP_003177158.1| - 1.6e-09 38.5 0.1 3.1e-09 37.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|257387385|ref|YP_003177158.1| - 7e-06 26.3 0.0 1.2e-05 25.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain ABC_tran PF00005.22 gi|257387385|ref|YP_003177158.1| - 0.00042 20.6 0.0 0.0011 19.3 0.0 1.5 1 1 0 1 1 1 1 ABC transporter Zeta_toxin PF06414.7 gi|257387385|ref|YP_003177158.1| - 0.00091 18.3 0.0 0.0024 17.0 0.0 1.7 2 0 0 2 2 2 1 Zeta toxin AAA_33 PF13671.1 gi|257387385|ref|YP_003177158.1| - 0.0037 17.1 0.0 0.006 16.4 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|257387385|ref|YP_003177158.1| - 0.0049 16.8 0.0 0.0093 15.9 0.0 1.4 1 0 0 1 1 1 1 AAA domain CoaE PF01121.15 gi|257387385|ref|YP_003177158.1| - 0.0071 15.7 0.6 0.083 12.2 0.0 2.1 2 0 0 2 2 2 1 Dephospho-CoA kinase ATP-synt_ab PF00006.20 gi|257387385|ref|YP_003177158.1| - 0.024 14.1 0.0 0.028 13.9 0.0 1.1 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain CPT PF07931.7 gi|257387385|ref|YP_003177158.1| - 0.048 13.2 0.0 0.088 12.4 0.0 1.5 1 0 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein SKI PF01202.17 gi|257387385|ref|YP_003177158.1| - 0.068 13.0 0.0 0.31 10.8 0.0 1.9 2 0 0 2 2 2 0 Shikimate kinase AAA_25 PF13481.1 gi|257387385|ref|YP_003177158.1| - 0.073 12.4 2.9 0.13 11.6 0.4 2.1 2 1 0 2 2 2 0 AAA domain AAA_5 PF07728.9 gi|257387385|ref|YP_003177158.1| - 0.089 12.5 0.0 0.81 9.4 0.0 2.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_29 PF13555.1 gi|257387385|ref|YP_003177158.1| - 0.1 12.1 0.2 0.21 11.1 0.2 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain APS_kinase PF01583.15 gi|257387385|ref|YP_003177158.1| - 0.13 11.9 0.0 0.23 11.0 0.0 1.5 1 0 0 1 1 1 0 Adenylylsulphate kinase DUF258 PF03193.11 gi|257387385|ref|YP_003177158.1| - 0.17 11.1 0.0 0.25 10.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Acetyltransf_10 PF13673.1 gi|257387387|ref|YP_003177160.1| - 4.3e-12 46.1 0.1 5.8e-12 45.7 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|257387387|ref|YP_003177160.1| - 3.9e-08 33.2 0.0 9.1e-08 32.0 0.0 1.7 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.1 gi|257387387|ref|YP_003177160.1| - 2.6e-06 27.6 0.1 3.2e-06 27.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|257387387|ref|YP_003177160.1| - 4.8e-05 23.4 0.0 9.1e-05 22.5 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|257387387|ref|YP_003177160.1| - 8e-05 22.6 0.0 0.00012 22.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|257387387|ref|YP_003177160.1| - 0.0033 17.3 0.6 0.0059 16.5 0.4 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|257387387|ref|YP_003177160.1| - 0.0053 16.6 0.2 0.034 14.0 0.1 2.1 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain HATPase_c PF02518.21 gi|257387388|ref|YP_003177161.1| - 3.6e-14 52.4 0.0 6.8e-14 51.5 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|257387388|ref|YP_003177161.1| - 4.5e-05 23.2 0.9 0.00026 20.7 0.1 2.1 1 1 0 2 2 2 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.1 gi|257387388|ref|YP_003177161.1| - 0.0051 16.4 0.0 0.0095 15.6 0.0 1.4 1 0 0 1 1 1 1 GHKL domain MMR_HSR1_C PF08438.5 gi|257387389|ref|YP_003177162.1| - 1.9e-28 98.8 0.0 3.2e-28 98.1 0.0 1.3 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.18 gi|257387389|ref|YP_003177162.1| - 1.2e-20 73.5 0.0 1e-17 64.1 0.0 2.8 3 0 0 3 3 3 2 50S ribosome-binding GTPase TGS PF02824.16 gi|257387389|ref|YP_003177162.1| - 1.3e-09 37.7 0.0 2.7e-09 36.7 0.0 1.5 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.13 gi|257387389|ref|YP_003177162.1| - 5.9e-06 25.6 0.0 0.00028 20.2 0.0 2.7 2 0 0 2 2 2 1 Ferrous iron transport protein B GTP_EFTU PF00009.22 gi|257387389|ref|YP_003177162.1| - 0.028 13.8 0.0 0.079 12.3 0.0 1.8 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain Dynamin_N PF00350.18 gi|257387389|ref|YP_003177162.1| - 0.033 14.0 0.2 0.92 9.3 0.0 2.7 3 0 0 3 3 3 0 Dynamin family ALF PF03752.8 gi|257387389|ref|YP_003177162.1| - 0.05 13.4 0.6 10 6.0 0.0 3.4 3 0 0 3 3 3 0 Short repeats of unknown function DUF3336 PF11815.3 gi|257387389|ref|YP_003177162.1| - 0.12 11.9 0.0 0.25 10.8 0.0 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF3336) Miro PF08477.8 gi|257387389|ref|YP_003177162.1| - 0.13 12.7 0.0 0.85 10.1 0.0 2.2 2 1 0 2 2 2 0 Miro-like protein DUF3081 PF11280.3 gi|257387390|ref|YP_003177163.1| - 0.1 12.0 0.0 0.14 11.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3081) HTH_10 PF04967.7 gi|257387391|ref|YP_003177164.1| - 3e-14 52.3 0.0 4.9e-14 51.6 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_5 PF01022.15 gi|257387391|ref|YP_003177164.1| - 0.0011 18.6 0.0 0.0023 17.5 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Sigma70_r4_2 PF08281.7 gi|257387391|ref|YP_003177164.1| - 0.0031 16.9 0.0 0.21 11.0 0.0 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_1 PF00126.22 gi|257387391|ref|YP_003177164.1| - 0.025 14.2 0.0 0.064 13.0 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family PALP PF00291.20 gi|257387392|ref|YP_003177165.1| - 3.1e-54 184.2 0.1 3.6e-54 184.0 0.1 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ADH_zinc_N PF00107.21 gi|257387392|ref|YP_003177165.1| - 5.6e-05 22.6 1.6 0.00072 19.1 1.1 2.4 1 1 0 1 1 1 1 Zinc-binding dehydrogenase Abhydrolase_6 PF12697.2 gi|257387392|ref|YP_003177165.1| - 0.14 12.0 2.9 0.12 12.2 0.7 1.8 1 1 1 2 2 2 0 Alpha/beta hydrolase family TRCF PF03461.10 gi|257387393|ref|YP_003177166.1| - 0.086 12.8 0.1 0.086 12.8 0.1 1.1 1 0 0 1 1 1 0 TRCF domain DUF159 PF02586.9 gi|257387394|ref|YP_003177167.1| - 1.8e-62 210.5 0.0 2.1e-62 210.3 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised ACR, COG2135 HTH_31 PF13560.1 gi|257387395|ref|YP_003177168.1| - 0.078 13.1 1.3 1.8 8.8 0.1 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain Saccharop_dh_N PF04455.7 gi|257387397|ref|YP_003177170.1| - 1.7e-39 134.0 0.0 3.6e-39 133.0 0.0 1.6 1 0 0 1 1 1 1 LOR/SDH bifunctional enzyme conserved region TPP_enzyme_M PF00205.17 gi|257387397|ref|YP_003177170.1| - 8.5e-06 25.5 0.2 0.0016 18.1 0.0 2.4 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, central domain DS PF01916.12 gi|257387397|ref|YP_003177170.1| - 0.012 14.7 0.0 0.031 13.4 0.0 1.7 1 1 0 1 1 1 0 Deoxyhypusine synthase Usp PF00582.21 gi|257387398|ref|YP_003177171.1| - 6.2e-26 91.2 1.0 7.1e-26 91.0 0.7 1.0 1 0 0 1 1 1 1 Universal stress protein family AP_endonuc_2 PF01261.19 gi|257387398|ref|YP_003177171.1| - 0.047 12.9 0.2 0.062 12.5 0.2 1.2 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel PKI PF02827.11 gi|257387399|ref|YP_003177172.1| - 0.19 11.8 1.2 6.5 6.9 0.0 2.3 1 1 1 2 2 2 0 cAMP-dependent protein kinase inhibitor Glyoxalase_2 PF12681.2 gi|257387400|ref|YP_003177173.1| - 1.9e-19 70.2 0.3 2.2e-19 70.0 0.2 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.20 gi|257387400|ref|YP_003177173.1| - 3.6e-16 59.3 0.2 4.1e-16 59.1 0.2 1.0 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.1 gi|257387400|ref|YP_003177173.1| - 1.3e-13 50.8 0.3 1.6e-13 50.6 0.2 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.1 gi|257387400|ref|YP_003177173.1| - 8.1e-05 22.5 0.6 0.00015 21.7 0.4 1.3 1 1 0 1 1 1 1 Glyoxalase-like domain VKOR PF07884.9 gi|257387401|ref|YP_003177174.1| - 0.0041 16.9 1.8 0.0041 16.9 1.3 2.2 2 0 0 2 2 2 1 Vitamin K epoxide reductase family TM_helix PF05552.7 gi|257387401|ref|YP_003177174.1| - 0.0049 16.5 0.6 0.0049 16.5 0.4 2.5 3 0 0 3 3 3 1 Conserved TM helix DUF3353 PF11833.3 gi|257387401|ref|YP_003177174.1| - 0.31 10.4 9.4 0.036 13.5 3.3 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3353) CbtB PF09489.5 gi|257387401|ref|YP_003177174.1| - 0.36 10.7 8.6 3 7.8 0.7 2.9 2 0 0 2 2 2 0 Probable cobalt transporter subunit (CbtB) RseC_MucC PF04246.7 gi|257387401|ref|YP_003177174.1| - 9.2 5.8 12.4 0.12 11.9 2.4 2.1 1 1 1 2 2 2 0 Positive regulator of sigma(E), RseC/MucC ILVD_EDD PF00920.16 gi|257387402|ref|YP_003177175.1| - 3.5e-202 672.4 0.5 4e-202 672.2 0.3 1.0 1 0 0 1 1 1 1 Dehydratase family GHMP_kinases_N PF00288.21 gi|257387403|ref|YP_003177176.1| - 4.4e-08 33.0 0.2 1.5e-07 31.3 0.0 2.0 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|257387403|ref|YP_003177176.1| - 0.02 15.1 0.1 0.044 13.9 0.1 1.6 1 0 0 1 1 1 0 GHMP kinases C terminal KaiC PF06745.8 gi|257387404|ref|YP_003177177.1| - 1.9e-08 33.6 0.2 0.00019 20.6 0.1 2.2 2 0 0 2 2 2 2 KaiC AAA_25 PF13481.1 gi|257387404|ref|YP_003177177.1| - 8.9e-06 25.2 0.8 0.00014 21.3 0.6 2.1 1 1 0 1 1 1 1 AAA domain Rad51 PF08423.6 gi|257387404|ref|YP_003177177.1| - 0.006 15.5 0.2 0.86 8.4 0.0 2.6 3 0 0 3 3 3 2 Rad51 DUF3322 PF11795.3 gi|257387404|ref|YP_003177177.1| - 0.13 11.8 0.0 0.48 10.0 0.0 1.8 1 1 1 2 2 2 0 Uncharacterized protein conserved in bacteria N-term (DUF3322) RHH_1 PF01402.16 gi|257387405|ref|YP_003177178.1| - 2.1e-06 27.3 0.1 2.1e-06 27.3 0.0 4.5 6 0 0 6 6 4 1 Ribbon-helix-helix protein, copG family Baculo_PEP_C PF04513.7 gi|257387405|ref|YP_003177178.1| - 0.00028 20.7 2.7 0.48 10.2 0.0 3.1 2 1 1 3 3 3 2 Baculovirus polyhedron envelope protein, PEP, C terminus FlaC_arch PF05377.6 gi|257387405|ref|YP_003177178.1| - 0.00043 20.1 4.6 0.038 13.8 0.0 4.4 4 1 0 4 4 4 1 Flagella accessory protein C (FlaC) Laminin_II PF06009.7 gi|257387405|ref|YP_003177178.1| - 0.00063 19.5 11.3 0.0016 18.2 0.1 3.3 3 0 0 3 3 3 1 Laminin Domain II Reo_sigmaC PF04582.7 gi|257387405|ref|YP_003177178.1| - 0.0083 15.3 3.3 0.0096 15.1 0.0 2.3 1 1 1 2 2 2 1 Reovirus sigma C capsid protein DUF2937 PF11157.3 gi|257387405|ref|YP_003177178.1| - 0.011 15.1 0.6 0.011 15.1 0.4 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF2937) Fib_alpha PF08702.5 gi|257387405|ref|YP_003177178.1| - 0.013 15.6 8.4 0.49 10.5 0.8 3.3 2 1 0 3 3 3 0 Fibrinogen alpha/beta chain family DUF4164 PF13747.1 gi|257387405|ref|YP_003177178.1| - 0.015 15.3 1.8 0.015 15.3 1.2 4.5 1 1 3 4 4 4 0 Domain of unknown function (DUF4164) UPF0184 PF03670.8 gi|257387405|ref|YP_003177178.1| - 0.019 15.1 0.5 0.019 15.1 0.3 3.4 3 1 0 3 3 3 0 Uncharacterised protein family (UPF0184) FliG_C PF01706.11 gi|257387405|ref|YP_003177178.1| - 0.022 14.7 2.4 0.022 14.7 1.7 2.6 2 1 1 3 3 3 0 FliG C-terminal domain DUF445 PF04286.7 gi|257387405|ref|YP_003177178.1| - 0.03 13.8 13.4 0.026 14.0 8.2 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF445) COG2 PF06148.6 gi|257387405|ref|YP_003177178.1| - 0.03 14.1 8.7 0.38 10.6 0.0 3.6 1 1 2 3 3 3 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF2884 PF11101.3 gi|257387405|ref|YP_003177178.1| - 0.042 13.2 6.0 0.042 13.2 1.9 2.3 1 1 1 3 3 3 0 Protein of unknown function (DUF2884) GAS PF13851.1 gi|257387405|ref|YP_003177178.1| - 0.046 12.9 7.3 5.4 6.1 0.2 3.3 2 1 0 3 3 3 0 Growth-arrest specific micro-tubule binding DUF668 PF05003.7 gi|257387405|ref|YP_003177178.1| - 0.056 13.6 1.8 3.3 7.9 0.1 3.0 1 1 2 3 3 3 0 Protein of unknown function (DUF668) AAA_13 PF13166.1 gi|257387405|ref|YP_003177178.1| - 0.09 11.2 5.6 0.14 10.6 3.6 1.4 1 1 0 1 1 1 0 AAA domain KMP11 PF03037.11 gi|257387405|ref|YP_003177178.1| - 0.12 12.9 1.5 0.32 11.5 0.4 2.2 2 0 0 2 2 1 0 Kinetoplastid membrane protein 11 Nup54 PF13874.1 gi|257387405|ref|YP_003177178.1| - 0.4 10.3 4.3 3.9 7.1 0.0 3.1 2 1 0 2 2 2 0 Nucleoporin complex subunit 54 DUF948 PF06103.6 gi|257387405|ref|YP_003177178.1| - 0.55 10.1 5.0 6.1 6.7 0.0 3.1 3 0 0 3 3 3 0 Bacterial protein of unknown function (DUF948) IFT57 PF10498.4 gi|257387405|ref|YP_003177178.1| - 0.69 8.5 14.3 12 4.5 9.9 2.2 1 1 0 1 1 1 0 Intra-flagellar transport protein 57 DUF4094 PF13334.1 gi|257387405|ref|YP_003177178.1| - 1.2 9.5 7.2 3.2 8.2 0.1 3.0 3 0 0 3 3 2 0 Domain of unknown function (DUF4094) DUF3837 PF12939.2 gi|257387405|ref|YP_003177178.1| - 1.3 9.0 6.6 0.21 11.5 0.4 2.7 2 1 0 3 3 3 0 Domain of unknown function (DUF3837) HAUS-augmin3 PF14932.1 gi|257387405|ref|YP_003177178.1| - 1.5 7.9 10.7 0.13 11.4 3.2 2.1 1 1 0 2 2 2 0 HAUS augmin-like complex subunit 3 Apolipoprotein PF01442.13 gi|257387405|ref|YP_003177178.1| - 1.6 8.1 25.7 1.7 8.1 14.6 2.4 1 1 1 2 2 2 0 Apolipoprotein A1/A4/E domain Syntaxin PF00804.20 gi|257387405|ref|YP_003177178.1| - 3.6 7.8 14.8 12 6.0 3.1 3.5 1 1 1 2 2 2 0 Syntaxin IncA PF04156.9 gi|257387405|ref|YP_003177178.1| - 3.7 7.1 15.1 0.012 15.1 2.0 2.7 1 1 1 2 2 1 0 IncA protein Seryl_tRNA_N PF02403.17 gi|257387405|ref|YP_003177178.1| - 4.1 7.4 8.3 7.5 6.6 0.4 3.3 2 1 1 3 3 3 0 Seryl-tRNA synthetase N-terminal domain Prominin PF05478.6 gi|257387405|ref|YP_003177178.1| - 5.2 4.4 6.7 8 3.8 1.8 2.3 1 1 0 2 2 2 0 Prominin Aldolase_2 PF10120.4 gi|257387407|ref|YP_003177180.1| - 2.8e-42 143.9 0.1 3.7e-42 143.5 0.0 1.2 1 0 0 1 1 1 1 Putative aldolase HTH_37 PF13744.1 gi|257387407|ref|YP_003177180.1| - 9.5e-05 22.1 0.0 0.0002 21.0 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|257387407|ref|YP_003177180.1| - 0.00015 21.8 0.7 0.00015 21.8 0.5 3.2 3 1 0 3 3 3 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|257387407|ref|YP_003177180.1| - 0.00077 19.0 0.2 0.0048 16.4 0.0 2.2 2 0 0 2 2 2 1 Homeodomain-like domain HTH_3 PF01381.17 gi|257387407|ref|YP_003177180.1| - 0.0068 16.2 0.0 0.017 14.9 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix Sigma70_r4 PF04545.11 gi|257387407|ref|YP_003177180.1| - 0.011 14.9 0.1 0.047 13.0 0.0 2.1 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_38 PF13936.1 gi|257387407|ref|YP_003177180.1| - 0.015 14.8 0.0 0.063 12.8 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_24 PF13412.1 gi|257387407|ref|YP_003177180.1| - 0.027 13.8 0.0 0.054 12.8 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|257387407|ref|YP_003177180.1| - 0.048 13.4 0.1 0.36 10.6 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|257387407|ref|YP_003177180.1| - 0.071 12.9 0.0 0.22 11.3 0.0 1.9 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain MarR_2 PF12802.2 gi|257387407|ref|YP_003177180.1| - 0.11 12.2 1.9 0.21 11.2 0.1 2.5 3 0 0 3 3 3 0 MarR family HTH_26 PF13443.1 gi|257387407|ref|YP_003177180.1| - 0.12 12.5 0.0 0.25 11.5 0.0 1.5 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain Nramp PF01566.13 gi|257387408|ref|YP_003177181.1| - 4.1e-59 200.1 35.9 4.1e-59 200.1 24.9 1.5 2 0 0 2 2 2 1 Natural resistance-associated macrophage protein DUF3961 PF13106.1 gi|257387408|ref|YP_003177181.1| - 3.5 7.2 5.6 1.2 8.7 1.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF3961) AAA_16 PF13191.1 gi|257387409|ref|YP_003177182.1| - 0.0041 17.1 0.4 0.0065 16.4 0.3 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_25 PF13481.1 gi|257387409|ref|YP_003177182.1| - 0.0089 15.4 0.2 0.023 14.1 0.2 1.9 1 1 0 1 1 1 1 AAA domain MobB PF03205.9 gi|257387409|ref|YP_003177182.1| - 0.017 14.8 0.0 0.026 14.2 0.0 1.2 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_18 PF13238.1 gi|257387409|ref|YP_003177182.1| - 0.056 13.7 0.0 0.086 13.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|257387409|ref|YP_003177182.1| - 0.069 12.5 0.0 0.08 12.3 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain ATP_bind_1 PF03029.12 gi|257387409|ref|YP_003177182.1| - 0.076 12.5 0.0 0.11 12.0 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_22 PF13401.1 gi|257387409|ref|YP_003177182.1| - 0.086 12.9 0.0 0.14 12.2 0.0 1.6 1 1 0 1 1 1 0 AAA domain TFIIS_C PF01096.13 gi|257387411|ref|YP_003177184.1| - 9.5e-17 60.3 2.4 9.5e-17 60.3 1.7 2.9 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.11 gi|257387411|ref|YP_003177184.1| - 1.1e-06 28.1 1.7 1.1e-06 28.1 1.2 3.0 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit DZR PF12773.2 gi|257387411|ref|YP_003177184.1| - 5.5e-06 26.1 10.7 3.6e-05 23.5 0.8 2.8 2 1 0 2 2 2 1 Double zinc ribbon OrfB_Zn_ribbon PF07282.6 gi|257387411|ref|YP_003177184.1| - 0.00024 20.6 11.6 0.01 15.4 1.5 2.7 2 1 0 2 2 2 2 Putative transposase DNA-binding domain DNA_RNApol_7kD PF03604.8 gi|257387411|ref|YP_003177184.1| - 0.0012 18.2 11.4 0.1 12.0 1.4 3.4 3 1 0 3 3 3 1 DNA directed RNA polymerase, 7 kDa subunit Zn_Tnp_IS1595 PF12760.2 gi|257387411|ref|YP_003177184.1| - 0.0021 17.8 8.9 0.012 15.3 0.5 3.0 2 1 1 3 3 3 1 Transposase zinc-ribbon domain HypA PF01155.14 gi|257387411|ref|YP_003177184.1| - 0.0059 16.2 8.2 0.27 10.9 1.3 2.5 1 1 1 2 2 2 2 Hydrogenase expression/synthesis hypA family zf-ribbon_3 PF13248.1 gi|257387411|ref|YP_003177184.1| - 0.0085 15.2 5.2 0.023 13.8 1.0 3.8 4 1 1 5 5 4 2 zinc-ribbon domain Cytochrome_C554 PF13435.1 gi|257387411|ref|YP_003177184.1| - 0.01 15.9 2.4 0.014 15.4 1.7 1.3 1 0 0 1 1 1 0 Cytochrome c554 and c-prime GFA PF04828.9 gi|257387411|ref|YP_003177184.1| - 0.011 15.7 10.9 0.32 10.9 0.0 3.9 1 1 3 4 4 4 0 Glutathione-dependent formaldehyde-activating enzyme zinc-ribbons_6 PF07191.7 gi|257387411|ref|YP_003177184.1| - 0.023 14.5 0.8 0.023 14.5 0.5 2.7 2 1 0 2 2 2 0 zinc-ribbons TF_Zn_Ribbon PF08271.7 gi|257387411|ref|YP_003177184.1| - 0.031 13.5 13.3 1.7 8.0 1.8 4.2 3 2 0 3 3 3 0 TFIIB zinc-binding DUF2318 PF10080.4 gi|257387411|ref|YP_003177184.1| - 0.055 13.2 1.9 0.055 13.2 1.3 2.8 1 1 1 3 3 3 0 Predicted membrane protein (DUF2318) GATA PF00320.22 gi|257387411|ref|YP_003177184.1| - 0.058 12.7 8.2 1.4 8.3 0.3 3.6 3 1 0 3 3 3 0 GATA zinc finger Prok-RING_1 PF14446.1 gi|257387411|ref|YP_003177184.1| - 0.064 12.9 9.3 0.1 12.3 1.9 3.1 3 0 0 3 3 3 0 Prokaryotic RING finger family 1 zf-IS66 PF13005.2 gi|257387411|ref|YP_003177184.1| - 0.1 12.5 10.6 1.7 8.6 1.0 4.0 3 1 1 4 4 4 0 zinc-finger binding domain of transposase IS66 DUF678 PF05077.7 gi|257387411|ref|YP_003177184.1| - 0.12 12.4 3.8 5.5 7.0 1.0 3.5 3 1 1 4 4 4 0 Protein of unknown function (DUF678) Zn-ribbon_8 PF09723.5 gi|257387411|ref|YP_003177184.1| - 0.12 12.3 17.1 0.55 10.2 2.6 3.7 2 2 0 3 3 3 0 Zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|257387411|ref|YP_003177184.1| - 0.15 11.6 11.1 8 6.0 0.2 4.1 4 0 0 4 4 4 0 zinc-ribbon domain Nudix_N_2 PF14803.1 gi|257387411|ref|YP_003177184.1| - 0.17 11.5 10.7 16 5.3 0.2 4.1 3 1 1 4 4 4 0 Nudix N-terminal zf-C3HC4_3 PF13920.1 gi|257387411|ref|YP_003177184.1| - 0.19 11.3 6.8 3.3 7.4 1.4 3.4 3 1 1 4 4 4 0 Zinc finger, C3HC4 type (RING finger) YhfH PF14149.1 gi|257387411|ref|YP_003177184.1| - 0.21 11.3 11.8 10 6.0 0.0 4.1 3 1 1 4 4 4 0 YhfH-like protein zf-trcl PF13451.1 gi|257387411|ref|YP_003177184.1| - 0.21 11.2 15.6 2.7 7.7 0.1 4.5 5 0 0 5 5 5 0 Probable zinc-binding domain zf-C2HC5 PF06221.8 gi|257387411|ref|YP_003177184.1| - 0.44 10.3 3.4 1.5 8.6 0.2 2.7 3 0 0 3 3 3 0 Putative zinc finger motif, C2HC5-type DUF702 PF05142.7 gi|257387411|ref|YP_003177184.1| - 0.6 10.2 6.8 6.2 6.9 0.3 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF702) IBR PF01485.16 gi|257387411|ref|YP_003177184.1| - 0.74 9.7 12.0 1.6 8.6 0.9 3.4 1 1 2 3 3 3 0 IBR domain C1_1 PF00130.17 gi|257387411|ref|YP_003177184.1| - 0.95 9.2 9.7 0.48 10.2 0.6 2.9 2 1 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Cytochrom_CIII PF02085.11 gi|257387411|ref|YP_003177184.1| - 0.97 9.5 5.3 3.5 7.7 0.2 2.4 1 1 1 2 2 2 0 Class III cytochrome C family Terminase_GpA PF05876.7 gi|257387411|ref|YP_003177184.1| - 0.98 7.6 5.2 1.1 7.5 1.0 2.0 1 1 1 2 2 2 0 Phage terminase large subunit (GpA) A2L_zn_ribbon PF08792.5 gi|257387411|ref|YP_003177184.1| - 1.2 8.7 16.1 2.8 7.4 3.0 3.9 3 1 0 3 3 3 0 A2L zinc ribbon domain Ribosomal_L44 PF00935.14 gi|257387411|ref|YP_003177184.1| - 1.4 9.0 4.7 12 5.9 0.1 3.4 3 1 1 4 4 4 0 Ribosomal protein L44 zf-C4_Topoisom PF01396.14 gi|257387411|ref|YP_003177184.1| - 1.7 8.2 5.4 34 4.0 0.0 3.6 4 0 0 4 4 4 0 Topoisomerase DNA binding C4 zinc finger zinc_ribbon_5 PF13719.1 gi|257387411|ref|YP_003177184.1| - 1.7 8.2 11.0 6.8 6.3 0.2 3.6 4 0 0 4 4 4 0 zinc-ribbon domain Ribosomal_L37e PF01907.14 gi|257387411|ref|YP_003177184.1| - 2.9 7.7 8.0 3.4 7.5 0.0 3.2 3 1 0 3 3 3 0 Ribosomal protein L37e zinc_ribbon_4 PF13717.1 gi|257387411|ref|YP_003177184.1| - 3 7.5 11.7 6.7 6.4 0.3 3.5 4 0 0 4 4 3 0 zinc-ribbon domain Mcm10 PF09332.6 gi|257387411|ref|YP_003177184.1| - 3.2 7.0 8.6 0.6 9.3 3.3 1.8 1 1 0 1 1 1 0 Mcm10 replication factor ADK_lid PF05191.9 gi|257387411|ref|YP_003177184.1| - 4 7.1 14.9 30 4.4 3.9 3.9 3 1 0 3 3 3 0 Adenylate kinase, active site lid zf-UBR PF02207.15 gi|257387411|ref|YP_003177184.1| - 4.3 7.1 10.3 7.3 6.3 0.5 3.1 2 1 1 3 3 3 0 Putative zinc finger in N-recognin (UBR box) DnaJ_CXXCXGXG PF00684.14 gi|257387411|ref|YP_003177184.1| - 4.4 7.4 10.1 5.7 7.0 0.9 2.5 2 1 0 2 2 2 0 DnaJ central domain DUF4428 PF14471.1 gi|257387411|ref|YP_003177184.1| - 5.7 6.7 7.5 2.3 8.0 1.0 3.0 3 1 0 3 3 3 0 Domain of unknown function (DUF4428) Ogr_Delta PF04606.7 gi|257387411|ref|YP_003177184.1| - 6.1 6.5 6.1 49 3.6 0.0 3.6 4 0 0 4 4 4 0 Ogr/Delta-like zinc finger zf-dskA_traR PF01258.12 gi|257387411|ref|YP_003177184.1| - 6.2 6.6 11.5 24 4.7 0.1 4.0 4 0 0 4 4 4 0 Prokaryotic dksA/traR C4-type zinc finger zf-HYPF PF07503.7 gi|257387411|ref|YP_003177184.1| - 6.6 6.2 11.6 50 3.4 0.1 4.0 3 1 0 3 3 3 0 HypF finger Sgf11 PF08209.6 gi|257387411|ref|YP_003177184.1| - 8.7 5.7 9.2 21 4.5 0.1 3.6 4 0 0 4 4 4 0 Sgf11 (transcriptional regulation protein) HisKA PF00512.20 gi|257387412|ref|YP_003177185.1| - 3.1e-06 27.0 0.4 9.4e-06 25.5 0.1 2.0 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS PF00989.19 gi|257387412|ref|YP_003177185.1| - 0.00022 20.9 0.0 0.062 13.0 0.0 2.7 1 1 1 2 2 2 2 PAS fold PAS_10 PF13596.1 gi|257387412|ref|YP_003177185.1| - 0.00023 21.3 0.0 0.00051 20.2 0.0 1.6 1 0 0 1 1 1 1 PAS domain PAS_8 PF13188.1 gi|257387412|ref|YP_003177185.1| - 0.00062 19.5 0.0 0.0026 17.5 0.0 2.1 2 0 0 2 2 2 1 PAS domain PAS_4 PF08448.5 gi|257387412|ref|YP_003177185.1| - 0.001 19.0 0.1 0.058 13.4 0.1 2.7 1 1 0 1 1 1 1 PAS fold PAS_9 PF13426.1 gi|257387412|ref|YP_003177185.1| - 0.0037 17.5 0.0 0.14 12.5 0.0 2.4 1 1 0 1 1 1 1 PAS domain CxxCxxCC PF03692.10 gi|257387413|ref|YP_003177186.1| - 2.6e-07 30.9 1.4 4.6e-07 30.2 1.0 1.5 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain Zip PF02535.17 gi|257387414|ref|YP_003177187.1| - 1.1e-07 31.2 4.8 1.1e-07 31.2 3.3 2.4 1 1 1 2 2 2 2 ZIP Zinc transporter Amino_oxidase PF01593.19 gi|257387415|ref|YP_003177188.1| - 5.2e-22 78.5 0.5 6e-12 45.3 0.0 2.7 2 1 0 2 2 2 2 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.1 gi|257387415|ref|YP_003177188.1| - 1.4e-16 60.2 0.1 3e-16 59.1 0.1 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|257387415|ref|YP_003177188.1| - 3.8e-16 58.9 0.0 5.1e-09 35.5 0.0 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox PF00070.22 gi|257387415|ref|YP_003177188.1| - 1.9e-07 31.3 3.3 3e-06 27.5 0.5 2.6 3 0 0 3 3 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|257387415|ref|YP_003177188.1| - 5.7e-07 28.9 0.0 9.8e-07 28.1 0.0 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|257387415|ref|YP_003177188.1| - 6.3e-07 28.5 2.3 6.3e-07 28.5 1.6 1.5 2 0 0 2 2 2 1 FAD binding domain HI0933_like PF03486.9 gi|257387415|ref|YP_003177188.1| - 1e-06 27.5 0.5 0.00028 19.5 0.5 2.2 2 0 0 2 2 2 2 HI0933-like protein Pyr_redox_3 PF13738.1 gi|257387415|ref|YP_003177188.1| - 1.2e-05 25.4 0.2 0.0015 18.6 0.1 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|257387415|ref|YP_003177188.1| - 1.3e-05 25.2 0.2 3.8e-05 23.6 0.2 1.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|257387415|ref|YP_003177188.1| - 2.3e-05 23.6 0.2 3.7e-05 22.9 0.1 1.3 1 0 0 1 1 1 1 FAD binding domain Thi4 PF01946.12 gi|257387415|ref|YP_003177188.1| - 0.00017 20.7 0.2 0.00028 20.0 0.2 1.3 1 0 0 1 1 1 1 Thi4 family GIDA PF01134.17 gi|257387415|ref|YP_003177188.1| - 0.00048 19.0 0.9 0.00086 18.2 0.6 1.4 1 0 0 1 1 1 1 Glucose inhibited division protein A NAD_binding_7 PF13241.1 gi|257387415|ref|YP_003177188.1| - 0.0025 18.0 0.0 0.0047 17.1 0.0 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding Methyltransf_18 PF12847.2 gi|257387415|ref|YP_003177188.1| - 0.0053 17.3 0.2 1.5 9.4 0.0 2.9 3 0 0 3 3 3 1 Methyltransferase domain AlaDh_PNT_C PF01262.16 gi|257387415|ref|YP_003177188.1| - 0.0056 16.2 0.1 0.02 14.4 0.0 1.8 2 0 0 2 2 2 1 Alanine dehydrogenase/PNT, C-terminal domain Strep_67kDa_ant PF06100.6 gi|257387415|ref|YP_003177188.1| - 0.024 12.9 0.0 0.033 12.5 0.0 1.2 1 0 0 1 1 1 0 Streptococcal 67 kDa myosin-cross-reactive antigen like family Trp_halogenase PF04820.9 gi|257387415|ref|YP_003177188.1| - 0.029 12.9 0.4 0.054 12.1 0.3 1.4 1 0 0 1 1 1 0 Tryptophan halogenase 3HCDH_N PF02737.13 gi|257387415|ref|YP_003177188.1| - 0.047 13.3 0.3 0.073 12.7 0.2 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.11 gi|257387415|ref|YP_003177188.1| - 0.076 12.4 0.2 0.15 11.5 0.1 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NAD_binding_9 PF13454.1 gi|257387415|ref|YP_003177188.1| - 0.35 10.6 1.4 5.2 6.8 0.1 2.4 2 0 0 2 2 2 0 FAD-NAD(P)-binding UbiA PF01040.13 gi|257387416|ref|YP_003177189.1| - 4e-26 91.7 22.2 5.9e-26 91.2 15.4 1.3 1 0 0 1 1 1 1 UbiA prenyltransferase family DUF3040 PF11239.3 gi|257387416|ref|YP_003177189.1| - 2.3 8.3 4.6 9.4 6.3 0.6 3.1 2 1 1 3 3 3 0 Protein of unknown function (DUF3040) DUF422 PF04240.7 gi|257387417|ref|YP_003177190.1| - 1e-73 247.3 16.3 1.3e-73 247.0 11.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF422) DUF2938 PF11158.3 gi|257387417|ref|YP_003177190.1| - 0.43 9.9 8.1 0.031 13.6 1.3 2.2 2 1 1 3 3 3 0 Protein of unknown function (DUF2938) DUF983 PF06170.7 gi|257387417|ref|YP_003177190.1| - 4.7 7.3 7.7 1.6 8.8 0.9 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF983) DUF58 PF01882.13 gi|257387419|ref|YP_003177192.1| - 6.5e-21 74.2 1.1 2.6e-20 72.3 0.1 2.4 2 1 0 2 2 2 1 Protein of unknown function DUF58 VWA_2 PF13519.1 gi|257387419|ref|YP_003177192.1| - 1.2e-07 32.0 0.4 1.8e-07 31.4 0.3 1.3 1 1 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.9 gi|257387419|ref|YP_003177192.1| - 2.8e-07 29.9 0.5 6.4e-07 28.7 0.3 1.6 1 1 0 1 1 1 1 VWA domain containing CoxE-like protein AAA_3 PF07726.6 gi|257387420|ref|YP_003177193.1| - 5.4e-62 207.2 0.3 8.8e-62 206.5 0.2 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|257387420|ref|YP_003177193.1| - 1.4e-11 44.2 0.0 2.6e-11 43.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|257387420|ref|YP_003177193.1| - 3e-09 36.1 0.1 6.1e-09 35.1 0.1 1.4 1 1 0 1 1 1 1 MCM2/3/5 family AAA PF00004.24 gi|257387420|ref|YP_003177193.1| - 9.4e-07 29.0 0.1 3.3e-06 27.3 0.0 1.9 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|257387420|ref|YP_003177193.1| - 9.3e-05 21.9 0.0 0.00054 19.4 0.0 2.0 1 1 0 1 1 1 1 Sigma-54 interaction domain RuvB_N PF05496.7 gi|257387420|ref|YP_003177193.1| - 0.00036 19.6 0.3 0.0036 16.3 0.2 2.3 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus Mg_chelatase PF01078.16 gi|257387420|ref|YP_003177193.1| - 0.0071 15.5 0.0 0.18 10.9 0.0 2.2 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_2 PF07724.9 gi|257387420|ref|YP_003177193.1| - 0.069 13.0 0.0 0.19 11.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain (Cdc48 subfamily) Phage_holin_3 PF05106.7 gi|257387421|ref|YP_003177194.1| - 0.005 16.8 0.2 0.012 15.5 0.1 1.6 1 0 0 1 1 1 1 Phage holin family (Lysis protein S) PEP-utilisers_N PF05524.8 gi|257387421|ref|YP_003177194.1| - 0.017 14.8 1.6 0.14 12.0 0.1 2.4 2 0 0 2 2 2 0 PEP-utilising enzyme, N-terminal IncA PF04156.9 gi|257387422|ref|YP_003177195.1| - 1.7e-10 40.8 33.1 2.9e-05 23.7 12.7 2.2 1 1 1 2 2 2 2 IncA protein bZIP_1 PF00170.16 gi|257387422|ref|YP_003177195.1| - 1.2e-09 37.9 24.6 0.00019 21.3 1.9 5.2 2 1 3 5 5 5 4 bZIP transcription factor DivIC PF04977.10 gi|257387422|ref|YP_003177195.1| - 1.6e-09 37.1 33.8 0.0024 17.3 1.0 5.3 1 1 5 6 6 6 3 Septum formation initiator ERM PF00769.14 gi|257387422|ref|YP_003177195.1| - 1.8e-09 37.4 30.2 2.3e-08 33.8 12.3 2.0 1 1 1 2 2 2 1 Ezrin/radixin/moesin family BLOC1_2 PF10046.4 gi|257387422|ref|YP_003177195.1| - 2.9e-09 36.9 23.8 0.00097 19.2 0.4 3.4 1 1 2 3 3 3 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 CENP-F_leu_zip PF10473.4 gi|257387422|ref|YP_003177195.1| - 1.3e-08 34.7 37.3 0.0002 21.2 10.4 3.1 1 1 2 3 3 3 3 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 ATG16 PF08614.6 gi|257387422|ref|YP_003177195.1| - 2.9e-08 33.7 35.4 0.0053 16.5 8.5 2.7 1 1 2 3 3 3 3 Autophagy protein 16 (ATG16) PspA_IM30 PF04012.7 gi|257387422|ref|YP_003177195.1| - 4.3e-08 32.7 24.6 0.00068 19.0 1.9 3.2 1 1 2 3 3 3 3 PspA/IM30 family TMF_DNA_bd PF12329.3 gi|257387422|ref|YP_003177195.1| - 6e-08 32.3 37.1 0.0017 18.1 3.2 3.5 1 1 3 4 4 4 3 TATA element modulatory factor 1 DNA binding TPR_MLP1_2 PF07926.7 gi|257387422|ref|YP_003177195.1| - 1.3e-07 31.3 30.9 3.3e-06 26.8 13.2 2.7 1 1 1 2 2 2 1 TPR/MLP1/MLP2-like protein Reo_sigmaC PF04582.7 gi|257387422|ref|YP_003177195.1| - 1.5e-07 30.9 15.3 1.5e-05 24.3 3.7 2.1 1 1 1 2 2 2 2 Reovirus sigma C capsid protein ADIP PF11559.3 gi|257387422|ref|YP_003177195.1| - 1.8e-07 31.1 30.9 6.1e-05 22.9 7.5 2.6 1 1 2 3 3 3 2 Afadin- and alpha -actinin-Binding Myosin_tail_1 PF01576.14 gi|257387422|ref|YP_003177195.1| - 2.9e-07 28.6 38.0 1.5e-06 26.2 18.2 1.8 1 1 1 2 2 2 2 Myosin tail DUF972 PF06156.8 gi|257387422|ref|YP_003177195.1| - 5.9e-07 29.8 24.8 0.00076 19.7 3.4 3.7 1 1 2 3 3 3 2 Protein of unknown function (DUF972) AAA_13 PF13166.1 gi|257387422|ref|YP_003177195.1| - 7.1e-07 28.0 17.5 9e-07 27.7 12.1 1.1 1 0 0 1 1 1 1 AAA domain Spc7 PF08317.6 gi|257387422|ref|YP_003177195.1| - 8.9e-07 27.8 28.3 0.00016 20.4 8.6 2.1 1 1 1 2 2 2 2 Spc7 kinetochore protein bZIP_2 PF07716.10 gi|257387422|ref|YP_003177195.1| - 1.8e-06 27.6 32.7 0.021 14.6 0.6 6.2 1 1 6 7 7 7 3 Basic region leucine zipper TMF_TATA_bd PF12325.3 gi|257387422|ref|YP_003177195.1| - 2.8e-06 27.0 35.3 0.00097 18.8 8.7 3.7 1 1 3 4 4 4 3 TATA element modulatory factor 1 TATA binding Cast PF10174.4 gi|257387422|ref|YP_003177195.1| - 5.1e-06 24.8 26.9 8.3e-06 24.1 18.7 1.3 1 0 0 1 1 1 1 RIM-binding protein of the cytomatrix active zone Tropomyosin_1 PF12718.2 gi|257387422|ref|YP_003177195.1| - 5.4e-06 26.2 40.0 0.0046 16.8 15.1 2.8 1 1 1 2 2 2 2 Tropomyosin like DUF904 PF06005.7 gi|257387422|ref|YP_003177195.1| - 5.8e-06 26.5 36.2 0.0075 16.5 3.9 4.1 1 1 3 4 4 4 3 Protein of unknown function (DUF904) Atg14 PF10186.4 gi|257387422|ref|YP_003177195.1| - 7.2e-06 25.1 24.8 0.0061 15.5 5.0 2.0 1 1 1 2 2 2 2 UV radiation resistance protein and autophagy-related subunit 14 DUF3584 PF12128.3 gi|257387422|ref|YP_003177195.1| - 7.4e-06 23.6 22.6 9.8e-06 23.2 15.7 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) Filament PF00038.16 gi|257387422|ref|YP_003177195.1| - 1.3e-05 24.8 30.1 0.0042 16.6 8.1 2.6 1 1 1 2 2 2 2 Intermediate filament protein FlaC_arch PF05377.6 gi|257387422|ref|YP_003177195.1| - 1.8e-05 24.5 29.8 0.0066 16.3 1.2 5.3 2 1 3 5 5 5 2 Flagella accessory protein C (FlaC) Tropomyosin PF00261.15 gi|257387422|ref|YP_003177195.1| - 2e-05 23.8 33.5 3.4e-05 23.0 23.2 1.4 1 0 0 1 1 1 1 Tropomyosin GAS PF13851.1 gi|257387422|ref|YP_003177195.1| - 2.1e-05 23.8 26.8 0.00036 19.7 9.0 2.8 1 1 1 2 2 2 2 Growth-arrest specific micro-tubule binding DUF4200 PF13863.1 gi|257387422|ref|YP_003177195.1| - 2.7e-05 24.1 28.4 0.0025 17.7 8.0 3.3 1 1 2 3 3 3 2 Domain of unknown function (DUF4200) WXG100 PF06013.7 gi|257387422|ref|YP_003177195.1| - 3.1e-05 23.8 16.4 0.5 10.4 0.4 4.7 1 1 3 5 5 5 1 Proteins of 100 residues with WXG APG6 PF04111.7 gi|257387422|ref|YP_003177195.1| - 4.1e-05 22.7 34.8 0.0014 17.7 8.7 2.0 1 1 1 2 2 2 2 Autophagy protein Apg6 Laminin_II PF06009.7 gi|257387422|ref|YP_003177195.1| - 4.7e-05 23.1 20.2 0.00083 19.1 3.5 2.8 1 1 2 3 3 3 3 Laminin Domain II CALCOCO1 PF07888.6 gi|257387422|ref|YP_003177195.1| - 5.2e-05 21.7 11.6 5.2e-05 21.7 8.0 2.1 1 1 1 2 2 2 1 Calcium binding and coiled-coil domain (CALCOCO1) like LPP PF04728.8 gi|257387422|ref|YP_003177195.1| - 5.7e-05 22.8 6.3 0.25 11.1 0.0 3.5 1 1 2 3 3 3 1 Lipoprotein leucine-zipper Shugoshin_N PF07558.6 gi|257387422|ref|YP_003177195.1| - 6.2e-05 22.6 19.2 0.056 13.1 1.6 4.5 2 1 3 5 5 5 2 Shugoshin N-terminal coiled-coil region DUF4201 PF13870.1 gi|257387422|ref|YP_003177195.1| - 7.5e-05 22.2 19.9 0.00011 21.7 8.8 2.7 1 1 1 2 2 2 1 Domain of unknown function (DUF4201) DUF3450 PF11932.3 gi|257387422|ref|YP_003177195.1| - 0.00014 21.2 24.7 0.0055 15.9 5.8 2.3 1 1 1 2 2 2 2 Protein of unknown function (DUF3450) NPV_P10 PF05531.7 gi|257387422|ref|YP_003177195.1| - 0.00016 21.8 21.7 0.41 10.9 5.4 4.2 1 1 2 3 3 3 1 Nucleopolyhedrovirus P10 protein HALZ PF02183.13 gi|257387422|ref|YP_003177195.1| - 0.0002 21.0 20.4 0.19 11.4 1.0 4.5 2 1 2 4 4 4 2 Homeobox associated leucine zipper Ax_dynein_light PF10211.4 gi|257387422|ref|YP_003177195.1| - 0.00021 21.2 27.4 0.0049 16.7 5.5 3.6 1 1 4 5 5 5 3 Axonemal dynein light chain DUF2730 PF10805.3 gi|257387422|ref|YP_003177195.1| - 0.00023 20.8 18.1 0.37 10.5 1.1 3.5 1 1 2 3 3 3 2 Protein of unknown function (DUF2730) Laminin_I PF06008.9 gi|257387422|ref|YP_003177195.1| - 0.00026 20.4 26.1 0.00042 19.7 10.5 2.6 1 1 0 2 2 2 1 Laminin Domain I IFT57 PF10498.4 gi|257387422|ref|YP_003177195.1| - 0.00027 19.8 17.6 0.00074 18.3 12.2 1.6 1 1 0 1 1 1 1 Intra-flagellar transport protein 57 DUF869 PF05911.6 gi|257387422|ref|YP_003177195.1| - 0.00029 19.2 26.9 0.017 13.3 9.1 2.0 1 1 1 2 2 2 2 Plant protein of unknown function (DUF869) EzrA PF06160.7 gi|257387422|ref|YP_003177195.1| - 0.00031 19.0 23.6 0.00091 17.5 16.3 1.6 1 1 0 1 1 1 1 Septation ring formation regulator, EzrA TBPIP PF07106.8 gi|257387422|ref|YP_003177195.1| - 0.00031 20.3 27.5 0.011 15.3 7.9 3.1 1 1 1 2 2 2 1 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) WEMBL PF05701.6 gi|257387422|ref|YP_003177195.1| - 0.00032 19.3 25.6 0.00042 18.9 17.8 1.1 1 0 0 1 1 1 1 Weak chloroplast movement under blue light Prefoldin_2 PF01920.15 gi|257387422|ref|YP_003177195.1| - 0.00036 20.2 31.2 0.004 16.8 3.6 4.4 1 1 3 4 4 4 1 Prefoldin subunit DUF1664 PF07889.7 gi|257387422|ref|YP_003177195.1| - 0.00044 20.0 15.9 0.016 14.9 4.7 2.7 1 1 1 2 2 2 1 Protein of unknown function (DUF1664) FlxA PF14282.1 gi|257387422|ref|YP_003177195.1| - 0.00048 20.0 6.9 0.00048 20.0 4.8 3.1 1 1 1 2 2 2 1 FlxA-like protein DUF3552 PF12072.3 gi|257387422|ref|YP_003177195.1| - 0.00051 19.3 14.8 0.00051 19.3 10.2 2.7 2 2 0 2 2 2 1 Domain of unknown function (DUF3552) PilJ PF13675.1 gi|257387422|ref|YP_003177195.1| - 0.00062 20.0 20.6 0.017 15.4 2.5 3.0 1 1 2 3 3 3 2 Type IV pili methyl-accepting chemotaxis transducer N-term DUF2968 PF11180.3 gi|257387422|ref|YP_003177195.1| - 0.00065 19.1 27.4 0.051 12.9 8.1 3.0 1 1 2 3 3 3 2 Protein of unknown function (DUF2968) Striatin PF08232.7 gi|257387422|ref|YP_003177195.1| - 0.00079 19.7 22.2 0.0036 17.6 2.0 3.1 1 1 2 3 3 3 1 Striatin family MAD PF05557.8 gi|257387422|ref|YP_003177195.1| - 0.00089 17.4 29.7 0.002 16.2 20.5 1.6 1 1 0 1 1 1 1 Mitotic checkpoint protein COG2 PF06148.6 gi|257387422|ref|YP_003177195.1| - 0.001 18.9 20.6 0.18 11.7 3.0 3.6 1 1 2 3 3 3 2 COG (conserved oligomeric Golgi) complex component, COG2 BicD PF09730.4 gi|257387422|ref|YP_003177195.1| - 0.001 17.5 23.7 0.0014 17.1 16.5 1.1 1 0 0 1 1 1 1 Microtubule-associated protein Bicaudal-D Rab5-bind PF09311.6 gi|257387422|ref|YP_003177195.1| - 0.001 18.9 35.6 0.038 13.8 8.5 2.1 1 1 1 2 2 2 2 Rabaptin-like protein CCDC155 PF14662.1 gi|257387422|ref|YP_003177195.1| - 0.0012 18.4 35.1 0.039 13.5 24.3 2.7 1 1 0 1 1 1 1 Coiled-coil region of CCDC155 DUF948 PF06103.6 gi|257387422|ref|YP_003177195.1| - 0.0013 18.5 18.6 0.17 11.7 1.3 3.7 1 1 2 3 3 3 1 Bacterial protein of unknown function (DUF948) Spc24 PF08286.6 gi|257387422|ref|YP_003177195.1| - 0.0015 18.2 37.7 0.014 15.1 4.0 4.1 1 1 3 4 4 4 1 Spc24 subunit of Ndc80 FliD_C PF07195.7 gi|257387422|ref|YP_003177195.1| - 0.0016 17.8 14.2 0.13 11.5 1.4 3.0 1 1 0 2 2 2 2 Flagellar hook-associated protein 2 C-terminus Prefoldin PF02996.12 gi|257387422|ref|YP_003177195.1| - 0.0016 18.0 26.7 0.015 14.9 3.0 4.9 1 1 4 5 5 5 2 Prefoldin subunit DUF812 PF05667.6 gi|257387422|ref|YP_003177195.1| - 0.0017 16.9 28.5 0.036 12.5 6.8 2.6 1 1 1 2 2 2 2 Protein of unknown function (DUF812) HrpB7 PF09486.5 gi|257387422|ref|YP_003177195.1| - 0.0018 18.1 21.1 0.043 13.7 9.6 3.0 1 1 1 2 2 2 1 Bacterial type III secretion protein (HrpB7) Mod_r PF07200.8 gi|257387422|ref|YP_003177195.1| - 0.0019 18.1 24.3 0.067 13.1 5.0 3.0 1 1 2 3 3 3 1 Modifier of rudimentary (Mod(r)) protein Lectin_N PF03954.9 gi|257387422|ref|YP_003177195.1| - 0.0021 17.4 19.1 0.075 12.4 5.5 3.0 1 1 2 3 3 3 2 Hepatic lectin, N-terminal domain Mnd1 PF03962.10 gi|257387422|ref|YP_003177195.1| - 0.0021 17.7 27.3 0.0092 15.6 8.2 2.6 1 1 1 2 2 2 1 Mnd1 family SlyX PF04102.7 gi|257387422|ref|YP_003177195.1| - 0.0023 18.2 30.3 0.029 14.7 6.6 3.9 2 1 2 4 4 4 2 SlyX Cortex-I_coil PF09304.5 gi|257387422|ref|YP_003177195.1| - 0.0023 17.9 31.9 0.007 16.3 7.2 3.2 1 1 2 3 3 3 1 Cortexillin I, coiled coil Snapin_Pallidin PF14712.1 gi|257387422|ref|YP_003177195.1| - 0.0026 18.0 24.9 1.3 9.4 2.4 4.3 1 1 4 5 5 5 0 Snapin/Pallidin DivIVA PF05103.8 gi|257387422|ref|YP_003177195.1| - 0.0029 17.6 28.1 0.11 12.5 2.0 3.2 1 1 2 3 3 3 2 DivIVA protein Fib_alpha PF08702.5 gi|257387422|ref|YP_003177195.1| - 0.0032 17.5 18.3 0.0067 16.5 4.0 2.4 1 1 1 2 2 2 2 Fibrinogen alpha/beta chain family DUF1202 PF06717.6 gi|257387422|ref|YP_003177195.1| - 0.0051 16.1 3.2 0.0085 15.4 0.3 2.2 1 1 1 2 2 2 1 Protein of unknown function (DUF1202) AAA_27 PF13514.1 gi|257387422|ref|YP_003177195.1| - 0.0063 14.2 27.9 0.012 13.3 19.3 1.4 1 1 0 1 1 1 1 AAA domain FliJ PF02050.11 gi|257387422|ref|YP_003177195.1| - 0.0064 16.5 20.9 0.13 12.3 2.5 3.1 1 1 2 3 3 3 1 Flagellar FliJ protein MscS_porin PF12795.2 gi|257387422|ref|YP_003177195.1| - 0.0067 15.7 35.7 0.14 11.4 24.1 2.1 1 1 0 1 1 1 1 Mechanosensitive ion channel porin domain Cep57_CLD_2 PF14197.1 gi|257387422|ref|YP_003177195.1| - 0.0067 16.3 17.5 0.0067 16.3 12.1 4.0 1 1 3 4 4 2 1 Centrosome localisation domain of PPC89 DASH_Hsk3 PF08227.6 gi|257387422|ref|YP_003177195.1| - 0.0072 16.4 11.7 0.94 9.7 0.4 4.2 3 2 0 4 4 3 0 DASH complex subunit Hsk3 like DUF4618 PF15397.1 gi|257387422|ref|YP_003177195.1| - 0.0075 15.6 24.6 0.028 13.7 4.8 3.0 1 1 1 2 2 2 1 Domain of unknown function (DUF4618) Sec2p PF06428.6 gi|257387422|ref|YP_003177195.1| - 0.0078 16.0 27.6 0.033 14.0 2.9 3.6 1 1 2 3 3 3 1 GDP/GTP exchange factor Sec2p MCPsignal PF00015.16 gi|257387422|ref|YP_003177195.1| - 0.0082 15.7 15.0 0.041 13.4 5.8 2.1 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain COG5 PF10392.4 gi|257387422|ref|YP_003177195.1| - 0.0089 15.9 11.8 0.18 11.7 0.5 2.8 1 1 2 3 3 3 1 Golgi transport complex subunit 5 DUF2205 PF10224.4 gi|257387422|ref|YP_003177195.1| - 0.0093 15.5 6.8 0.0093 15.5 4.7 3.8 1 1 3 4 4 4 1 Predicted coiled-coil protein (DUF2205) CCDC144C PF14915.1 gi|257387422|ref|YP_003177195.1| - 0.011 14.7 28.1 0.22 10.4 19.0 2.0 1 1 0 1 1 1 0 CCDC144C protein coiled-coil region NTR2 PF15458.1 gi|257387422|ref|YP_003177195.1| - 0.012 14.8 5.3 0.012 14.8 3.7 3.8 1 1 3 4 4 4 0 Nineteen complex-related protein 2 DUF4140 PF13600.1 gi|257387422|ref|YP_003177195.1| - 0.013 15.9 30.4 0.053 13.9 5.3 4.3 1 1 2 3 3 2 0 N-terminal domain of unknown function (DUF4140) Bacillus_HBL PF05791.6 gi|257387422|ref|YP_003177195.1| - 0.014 14.8 16.0 0.081 12.2 2.4 2.7 1 1 1 2 2 2 0 Bacillus haemolytic enterotoxin (HBL) Tektin PF03148.9 gi|257387422|ref|YP_003177195.1| - 0.014 13.9 30.5 0.038 12.5 6.8 2.6 1 1 1 2 2 2 0 Tektin family Med4 PF10018.4 gi|257387422|ref|YP_003177195.1| - 0.015 14.7 27.7 0.2 11.0 5.5 3.0 1 1 0 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 Fzo_mitofusin PF04799.8 gi|257387422|ref|YP_003177195.1| - 0.019 14.3 19.2 0.059 12.7 1.3 3.2 1 1 2 3 3 3 0 fzo-like conserved region Seryl_tRNA_N PF02403.17 gi|257387422|ref|YP_003177195.1| - 0.022 14.7 25.2 0.15 12.0 7.8 3.1 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain Prominin PF05478.6 gi|257387422|ref|YP_003177195.1| - 0.023 12.2 16.3 0.043 11.3 10.7 1.7 1 1 1 2 2 2 0 Prominin CENP-Q PF13094.1 gi|257387422|ref|YP_003177195.1| - 0.023 14.7 34.6 0.16 11.9 6.0 2.2 1 1 1 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit Nup54 PF13874.1 gi|257387422|ref|YP_003177195.1| - 0.028 14.1 23.3 0.083 12.5 5.3 3.1 1 1 2 3 3 3 0 Nucleoporin complex subunit 54 DUF4094 PF13334.1 gi|257387422|ref|YP_003177195.1| - 0.029 14.7 5.8 0.029 14.7 4.0 3.0 1 1 2 3 3 1 0 Domain of unknown function (DUF4094) Syntaxin-6_N PF09177.6 gi|257387422|ref|YP_003177195.1| - 0.03 14.7 28.4 0.24 11.8 7.0 3.5 1 1 2 3 3 3 0 Syntaxin 6, N-terminal Spectrin PF00435.16 gi|257387422|ref|YP_003177195.1| - 0.033 14.4 22.9 0.024 14.9 8.1 3.2 1 1 2 3 3 3 0 Spectrin repeat PEARLI-4 PF05278.7 gi|257387422|ref|YP_003177195.1| - 0.038 13.3 16.6 0.12 11.7 1.8 3.0 1 1 2 3 3 3 0 Arabidopsis phospholipase-like protein (PEARLI 4) DUF641 PF04859.7 gi|257387422|ref|YP_003177195.1| - 0.042 13.6 19.2 0.75 9.5 1.8 3.3 1 1 2 3 3 3 0 Plant protein of unknown function (DUF641) Macoilin PF09726.4 gi|257387422|ref|YP_003177195.1| - 0.042 12.1 27.6 0.14 10.3 19.1 1.7 1 1 0 1 1 1 0 Transmembrane protein HSBP1 PF06825.7 gi|257387422|ref|YP_003177195.1| - 0.047 13.2 15.1 1.2 8.7 1.1 5.0 3 3 0 3 3 3 0 Heat shock factor binding protein 1 Lebercilin PF15619.1 gi|257387422|ref|YP_003177195.1| - 0.05 13.0 30.9 1.4 8.2 9.2 3.2 1 1 1 2 2 2 0 Ciliary protein causing Leber congenital amaurosis disease HalX PF08663.5 gi|257387422|ref|YP_003177195.1| - 0.051 13.5 2.4 0.051 13.5 1.7 5.4 1 1 4 5 5 3 0 HalX domain Rootletin PF15035.1 gi|257387422|ref|YP_003177195.1| - 0.062 13.2 33.0 1.9 8.4 16.3 2.6 1 1 1 2 2 2 0 Ciliary rootlet component, centrosome cohesion HOOK PF05622.7 gi|257387422|ref|YP_003177195.1| - 0.072 10.8 30.4 0.34 8.6 14.1 2.2 1 1 1 2 2 2 0 HOOK protein DUF1192 PF06698.6 gi|257387422|ref|YP_003177195.1| - 0.076 12.8 1.2 0.076 12.8 0.8 5.6 2 2 4 6 6 5 0 Protein of unknown function (DUF1192) DUF2353 PF09789.4 gi|257387422|ref|YP_003177195.1| - 0.076 12.2 29.0 0.048 12.9 6.8 3.0 1 1 1 2 2 2 0 Uncharacterized coiled-coil protein (DUF2353) OmpH PF03938.9 gi|257387422|ref|YP_003177195.1| - 0.096 12.6 24.9 9.7e+02 -0.4 17.3 2.4 1 1 0 1 1 0 0 Outer membrane protein (OmpH-like) LEA_1 PF03760.10 gi|257387422|ref|YP_003177195.1| - 0.1 12.7 0.4 0.1 12.7 0.3 2.0 3 0 0 3 3 1 0 Late embryogenesis abundant (LEA) group 1 DUF4337 PF14235.1 gi|257387422|ref|YP_003177195.1| - 0.11 12.3 19.0 1.5 8.6 6.4 3.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4337) RmuC PF02646.11 gi|257387422|ref|YP_003177195.1| - 0.11 11.3 16.6 0.74 8.5 1.7 3.0 1 1 2 3 3 3 0 RmuC family DUF2935 PF11155.3 gi|257387422|ref|YP_003177195.1| - 0.11 12.5 8.9 0.52 10.4 1.1 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF2935) GOLGA2L5 PF15070.1 gi|257387422|ref|YP_003177195.1| - 0.12 10.8 23.5 0.06 11.8 4.6 2.4 1 1 2 3 3 3 0 Putative golgin subfamily A member 2-like protein 5 Uds1 PF15456.1 gi|257387422|ref|YP_003177195.1| - 0.13 12.2 27.8 0.069 13.1 5.3 3.6 1 1 3 4 4 4 0 Up-regulated During Septation V_ATPase_I PF01496.14 gi|257387422|ref|YP_003177195.1| - 0.13 10.0 25.1 0.2 9.4 6.6 2.1 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family APG17 PF04108.7 gi|257387422|ref|YP_003177195.1| - 0.13 10.9 20.8 0.047 12.4 12.0 1.7 1 1 1 2 2 2 0 Autophagy protein Apg17 MbeD_MobD PF04899.7 gi|257387422|ref|YP_003177195.1| - 0.13 12.1 16.5 0.94 9.4 1.1 4.2 1 1 3 4 4 3 0 MbeD/MobD like DUF342 PF03961.8 gi|257387422|ref|YP_003177195.1| - 0.14 10.5 18.5 0.51 8.6 3.5 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF342) Vac_Fusion PF02346.11 gi|257387422|ref|YP_003177195.1| - 0.16 11.3 6.7 1.1 8.7 0.2 3.3 2 1 1 3 3 2 0 Chordopoxvirus fusion protein THOC7 PF05615.8 gi|257387422|ref|YP_003177195.1| - 0.16 12.2 27.6 0.94 9.7 2.6 2.8 1 1 1 2 2 2 0 Tho complex subunit 7 AATF-Che1 PF13339.1 gi|257387422|ref|YP_003177195.1| - 0.17 12.0 20.8 1.3 9.2 3.2 2.3 1 1 1 2 2 2 0 Apoptosis antagonizing transcription factor Flagellin_C PF00700.16 gi|257387422|ref|YP_003177195.1| - 0.17 12.0 11.4 1.8 8.7 0.9 3.6 1 1 3 4 4 4 0 Bacterial flagellin C-terminal helical region EMP24_GP25L PF01105.19 gi|257387422|ref|YP_003177195.1| - 0.18 11.4 22.5 0.031 13.9 3.4 3.2 1 1 1 2 2 2 0 emp24/gp25L/p24 family/GOLD Sipho_Gp157 PF05565.6 gi|257387422|ref|YP_003177195.1| - 0.2 11.2 18.5 0.14 11.7 4.8 2.2 1 1 1 2 2 2 0 Siphovirus Gp157 Phage_GP20 PF06810.6 gi|257387422|ref|YP_003177195.1| - 0.2 11.0 29.9 0.71 9.2 5.7 3.3 1 1 2 3 3 3 0 Phage minor structural protein GP20 YscO PF07321.7 gi|257387422|ref|YP_003177195.1| - 0.22 11.3 29.7 0.066 13.0 1.2 3.9 1 1 3 4 4 4 0 Type III secretion protein YscO Syntaxin PF00804.20 gi|257387422|ref|YP_003177195.1| - 0.22 11.7 24.5 0.25 11.5 5.7 2.5 1 1 1 2 2 2 0 Syntaxin Med10 PF09748.4 gi|257387422|ref|YP_003177195.1| - 0.24 11.2 8.7 0.56 10.0 0.2 3.1 1 1 2 3 3 3 0 Transcription factor subunit Med10 of Mediator complex Taxilin PF09728.4 gi|257387422|ref|YP_003177195.1| - 0.26 10.3 25.6 9 5.2 16.6 2.1 1 1 0 1 1 1 0 Myosin-like coiled-coil protein TMPIT PF07851.8 gi|257387422|ref|YP_003177195.1| - 0.26 10.3 16.9 0.66 8.9 3.3 2.1 1 1 1 2 2 2 0 TMPIT-like protein EAP30 PF04157.11 gi|257387422|ref|YP_003177195.1| - 0.3 10.2 16.4 0.11 11.6 1.8 2.8 1 1 2 3 3 3 0 EAP30/Vps36 family DUF2681 PF10883.3 gi|257387422|ref|YP_003177195.1| - 0.32 11.2 13.8 1 9.5 0.5 3.9 1 1 3 4 4 4 0 Protein of unknown function (DUF2681) Hemerythrin PF01814.18 gi|257387422|ref|YP_003177195.1| - 0.34 11.0 15.6 6.5e+02 0.4 10.9 3.4 1 1 0 1 1 1 0 Hemerythrin HHE cation binding domain zf-C4H2 PF10146.4 gi|257387422|ref|YP_003177195.1| - 0.35 10.8 23.2 0.38 10.7 6.2 2.0 1 1 1 2 2 2 0 Zinc finger-containing protein bZIP_Maf PF03131.12 gi|257387422|ref|YP_003177195.1| - 0.36 11.1 30.0 0.77 10.1 1.5 4.2 2 2 1 4 4 4 0 bZIP Maf transcription factor DUF848 PF05852.6 gi|257387422|ref|YP_003177195.1| - 0.36 10.6 27.6 0.16 11.7 11.0 2.9 1 1 2 3 3 3 0 Gammaherpesvirus protein of unknown function (DUF848) TSC22 PF01166.13 gi|257387422|ref|YP_003177195.1| - 0.36 10.8 31.1 0.35 10.8 1.6 4.8 1 1 4 5 5 3 0 TSC-22/dip/bun family Jnk-SapK_ap_N PF09744.4 gi|257387422|ref|YP_003177195.1| - 0.36 10.7 27.7 0.76 9.7 5.0 2.9 1 1 2 3 3 2 0 JNK_SAPK-associated protein-1 DUF4446 PF14584.1 gi|257387422|ref|YP_003177195.1| - 0.38 10.5 17.8 1.5 8.6 0.4 3.8 1 1 3 4 4 4 0 Protein of unknown function (DUF4446) FH2 PF02181.18 gi|257387422|ref|YP_003177195.1| - 0.41 9.4 15.3 0.76 8.5 4.6 2.2 1 1 1 2 2 2 0 Formin Homology 2 Domain Uso1_p115_C PF04871.8 gi|257387422|ref|YP_003177195.1| - 0.41 10.5 38.1 1.7 8.5 17.3 2.4 1 1 1 2 2 2 0 Uso1 / p115 like vesicle tethering protein, C terminal region gpW PF02831.10 gi|257387422|ref|YP_003177195.1| - 0.44 10.1 4.4 7.8 6.1 0.1 4.0 1 1 5 6 6 4 0 gpW Kinetocho_Slk19 PF12709.2 gi|257387422|ref|YP_003177195.1| - 0.48 10.5 28.3 2.1 8.4 0.9 5.3 1 1 2 3 3 2 0 Central kinetochore-associated Fmp27_WPPW PF10359.4 gi|257387422|ref|YP_003177195.1| - 0.48 8.7 25.5 0.043 12.2 5.6 2.1 1 1 1 2 2 2 0 RNA pol II promoter Fmp27 protein domain Transposase_22 PF02994.9 gi|257387422|ref|YP_003177195.1| - 0.48 8.8 21.3 0.25 9.7 3.9 2.2 1 1 1 2 2 2 0 L1 transposable element Nnf1 PF03980.9 gi|257387422|ref|YP_003177195.1| - 0.51 10.3 27.3 0.76 9.7 0.6 4.4 1 1 3 4 4 4 0 Nnf1 Bap31 PF05529.7 gi|257387422|ref|YP_003177195.1| - 0.51 9.7 18.5 2.1 7.7 1.1 3.1 1 1 1 2 2 2 0 B-cell receptor-associated protein 31-like Baculo_gp64 PF03273.8 gi|257387422|ref|YP_003177195.1| - 0.53 8.3 3.7 0.76 7.8 2.6 1.2 1 1 0 1 1 1 0 Baculovirus gp64 envelope glycoprotein family DUF724 PF05266.9 gi|257387422|ref|YP_003177195.1| - 0.54 9.8 19.1 0.73 9.4 2.6 2.8 1 1 2 3 3 3 0 Protein of unknown function (DUF724) HAUS5 PF14817.1 gi|257387422|ref|YP_003177195.1| - 0.55 8.7 27.1 0.093 11.2 5.6 2.3 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 5 KLRAQ PF10205.4 gi|257387422|ref|YP_003177195.1| - 0.58 10.2 27.2 2.4 8.2 5.5 3.3 1 1 2 3 3 3 0 Predicted coiled-coil domain-containing protein DUF4407 PF14362.1 gi|257387422|ref|YP_003177195.1| - 0.66 8.8 25.9 1.1 8.1 8.5 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) TarH PF02203.10 gi|257387422|ref|YP_003177195.1| - 0.7 9.7 18.6 42 3.9 11.4 2.9 1 1 1 2 2 2 0 Tar ligand binding domain homologue FemAB PF02388.11 gi|257387422|ref|YP_003177195.1| - 0.71 8.4 15.7 1.7 7.2 3.6 2.3 1 1 1 2 2 2 0 FemAB family DUF3086 PF11285.3 gi|257387422|ref|YP_003177195.1| - 0.81 8.4 20.3 0.31 9.8 0.6 3.1 1 1 2 3 3 3 0 Protein of unknown function (DUF3086) Fez1 PF06818.10 gi|257387422|ref|YP_003177195.1| - 0.84 9.6 28.4 43 4.0 19.7 2.7 1 1 0 1 1 1 0 Fez1 GrpE PF01025.14 gi|257387422|ref|YP_003177195.1| - 0.84 9.1 31.1 0.18 11.3 2.2 3.8 1 1 2 3 3 3 0 GrpE GP41 PF00517.12 gi|257387422|ref|YP_003177195.1| - 0.93 9.0 9.4 3 7.3 0.5 3.1 1 1 2 3 3 3 0 Retroviral envelope protein DUF4559 PF15112.1 gi|257387422|ref|YP_003177195.1| - 0.99 8.5 20.7 2.7 7.0 1.0 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4559) Troponin PF00992.15 gi|257387422|ref|YP_003177195.1| - 1.1 9.3 25.3 0.088 12.8 8.5 2.5 1 1 1 2 2 1 0 Troponin TraF_2 PF13729.1 gi|257387422|ref|YP_003177195.1| - 1.2 7.8 12.1 0.4 9.4 1.8 2.4 1 1 1 2 2 2 0 F plasmid transfer operon, TraF, protein Viral_P18 PF04521.8 gi|257387422|ref|YP_003177195.1| - 1.2 8.5 15.4 7.4 6.0 2.5 3.9 1 1 3 4 4 4 0 ssRNA positive strand viral 18kD cysteine rich protein Occludin_ELL PF07303.8 gi|257387422|ref|YP_003177195.1| - 1.3 9.7 15.7 8.7 7.1 0.6 3.7 1 1 2 3 3 3 0 Occludin homology domain NYD-SP28_assoc PF14775.1 gi|257387422|ref|YP_003177195.1| - 1.3 8.7 19.9 1.3 8.8 1.0 4.4 2 1 2 4 4 4 0 Sperm tail C-terminal domain DUF2203 PF09969.4 gi|257387422|ref|YP_003177195.1| - 1.4 9.1 15.0 1.5 9.0 2.1 2.9 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2203) Osmo_CC PF08946.5 gi|257387422|ref|YP_003177195.1| - 1.5 8.9 19.6 2 8.5 2.9 4.4 1 1 2 4 4 3 0 Osmosensory transporter coiled coil ApoO PF09769.4 gi|257387422|ref|YP_003177195.1| - 1.6 8.4 7.3 41 3.8 5.0 2.5 1 1 0 1 1 1 0 Apolipoprotein O HR1 PF02185.11 gi|257387422|ref|YP_003177195.1| - 1.7 8.4 25.3 2.5 7.9 2.5 4.9 1 1 4 5 5 5 0 Hr1 repeat YlqD PF11068.3 gi|257387422|ref|YP_003177195.1| - 1.8 8.5 22.3 6.7 6.7 4.0 3.3 1 1 0 2 2 2 0 YlqD protein Mt_ATP-synt_D PF05873.7 gi|257387422|ref|YP_003177195.1| - 1.9 8.1 5.6 1.7 8.2 0.1 2.1 1 1 1 2 2 2 0 ATP synthase D chain, mitochondrial (ATP5H) DUF4164 PF13747.1 gi|257387422|ref|YP_003177195.1| - 1.9 8.6 40.2 0.3 11.2 9.8 3.1 1 1 2 3 3 3 0 Domain of unknown function (DUF4164) CorA PF01544.13 gi|257387422|ref|YP_003177195.1| - 2.1 7.3 20.1 1.6 7.6 4.8 2.4 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein DUF3573 PF12097.3 gi|257387422|ref|YP_003177195.1| - 2.5 6.6 11.1 0.99 7.9 1.2 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3573) MtrB PF05440.7 gi|257387422|ref|YP_003177195.1| - 2.6 8.1 9.9 14 5.8 0.4 3.9 1 1 4 5 5 5 0 Tetrahydromethanopterin S-methyltransferase subunit B XhlA PF10779.4 gi|257387422|ref|YP_003177195.1| - 2.9 7.8 30.2 0.23 11.3 1.7 4.3 1 1 3 4 4 4 0 Haemolysin XhlA Cluap1 PF10234.4 gi|257387422|ref|YP_003177195.1| - 3.1 6.9 24.4 4.7 6.3 5.3 2.6 1 1 2 3 3 3 0 Clusterin-associated protein-1 Acyl-CoA_dh_C PF12806.2 gi|257387422|ref|YP_003177195.1| - 3.1 7.6 9.6 0.67 9.8 0.4 3.1 2 1 1 3 3 3 0 Acetyl-CoA dehydrogenase C-terminal like RTBV_P46 PF06216.6 gi|257387422|ref|YP_003177195.1| - 3.6 6.3 14.1 0.17 10.6 1.5 3.1 1 1 1 3 3 3 0 Rice tungro bacilliform virus P46 protein DUF2570 PF10828.3 gi|257387422|ref|YP_003177195.1| - 3.7 7.1 16.4 3.5 7.2 3.5 2.7 1 1 2 3 3 3 0 Protein of unknown function (DUF2570) DegS PF05384.6 gi|257387422|ref|YP_003177195.1| - 4 6.6 24.1 2.5 7.3 3.7 3.0 1 1 1 2 2 2 0 Sensor protein DegS ACCA PF03255.9 gi|257387422|ref|YP_003177195.1| - 4.7 6.7 14.5 10 5.6 2.9 3.3 1 1 1 3 3 3 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit DUF465 PF04325.8 gi|257387422|ref|YP_003177195.1| - 4.8 6.9 10.8 11 5.7 4.0 3.4 2 2 1 3 3 2 0 Protein of unknown function (DUF465) DUF745 PF05335.8 gi|257387422|ref|YP_003177195.1| - 5.3 6.5 18.4 2 7.8 5.8 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF745) She9_MDM33 PF05546.6 gi|257387422|ref|YP_003177195.1| - 5.5 6.4 23.0 3.1 7.2 7.7 2.9 1 1 2 3 3 3 0 She9 / Mdm33 family HlyD PF00529.15 gi|257387422|ref|YP_003177195.1| - 5.9 6.0 25.7 17 4.6 8.7 2.4 1 1 1 2 2 2 0 HlyD family secretion protein FUSC PF04632.7 gi|257387422|ref|YP_003177195.1| - 6.2 5.1 21.0 3.6 5.8 2.4 2.0 1 1 1 2 2 2 0 Fusaric acid resistance protein family DUF3373 PF11853.3 gi|257387422|ref|YP_003177195.1| - 6.6 5.1 18.2 1.1e+04 -5.6 12.6 3.2 1 1 0 1 1 0 0 Protein of unknown function (DUF3373) BRE1 PF08647.6 gi|257387422|ref|YP_003177195.1| - 7 6.6 19.4 0.17 11.8 2.2 3.3 1 1 3 4 4 2 0 BRE1 E3 ubiquitin ligase Hemagglutinin PF00509.13 gi|257387422|ref|YP_003177195.1| - 7.1 4.6 13.7 1.8 6.5 3.8 2.1 1 1 1 2 2 2 0 Haemagglutinin ORF6C PF10552.4 gi|257387422|ref|YP_003177195.1| - 7.9 6.2 15.5 7.4 6.3 0.5 4.0 1 1 3 4 4 4 0 ORF6C domain UPF0242 PF06785.6 gi|257387422|ref|YP_003177195.1| - 8.3 4.9 22.6 2.6 6.6 9.9 2.0 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0242) RasGAP_C PF03836.10 gi|257387422|ref|YP_003177195.1| - 9.1 5.9 16.2 0.49 10.0 1.0 3.1 1 1 2 3 3 3 0 RasGAP C-terminus NuA4 PF09340.5 gi|257387422|ref|YP_003177195.1| - 9.5 5.9 10.8 14 5.4 1.0 3.5 1 1 2 3 3 3 0 Histone acetyltransferase subunit NuA4 VWA_2 PF13519.1 gi|257387423|ref|YP_003177196.1| - 1.3e-26 93.6 5.9 2e-24 86.6 0.1 4.0 3 1 0 3 3 3 1 von Willebrand factor type A domain VWA PF00092.23 gi|257387423|ref|YP_003177196.1| - 7.6e-17 61.5 0.4 8.6e-15 54.8 0.0 3.0 2 1 1 3 3 3 1 von Willebrand factor type A domain VWA_3 PF13768.1 gi|257387423|ref|YP_003177196.1| - 8.1e-12 45.0 0.1 2.3e-11 43.6 0.0 1.8 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.9 gi|257387423|ref|YP_003177196.1| - 3.4e-08 32.8 1.1 5.8e-07 28.8 0.0 2.7 2 1 1 3 3 3 1 VWA domain containing CoxE-like protein DUF1355 PF07090.6 gi|257387423|ref|YP_003177196.1| - 2.3e-07 30.3 0.1 5.2e-07 29.2 0.1 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1355) Filamin PF00630.14 gi|257387423|ref|YP_003177196.1| - 0.052 14.1 0.0 10 6.7 0.0 2.7 2 0 0 2 2 2 0 Filamin/ABP280 repeat BatA PF07584.6 gi|257387423|ref|YP_003177196.1| - 0.32 11.2 2.4 0.27 11.4 0.3 1.9 1 1 1 2 2 2 0 Aerotolerance regulator N-terminal BatA PF07584.6 gi|257387424|ref|YP_003177197.1| - 1.2e-15 57.4 6.4 2.1e-15 56.6 4.5 1.4 1 0 0 1 1 1 1 Aerotolerance regulator N-terminal VWA_2 PF13519.1 gi|257387424|ref|YP_003177197.1| - 5.1e-06 26.7 0.6 5.1e-06 26.7 0.4 1.8 2 0 0 2 2 2 1 von Willebrand factor type A domain DUF58 PF01882.13 gi|257387424|ref|YP_003177197.1| - 0.0072 16.4 0.2 0.028 14.5 0.1 2.0 1 0 0 1 1 1 1 Protein of unknown function DUF58 DUF3368 PF11848.3 gi|257387425|ref|YP_003177198.1| - 4.4e-05 22.9 0.0 8.8e-05 21.9 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF3368) PIN_4 PF13638.1 gi|257387425|ref|YP_003177198.1| - 0.042 13.9 0.6 1.5 8.9 0.0 2.3 1 1 0 2 2 2 0 PIN domain RHH_1 PF01402.16 gi|257387426|ref|YP_003177199.1| - 0.0012 18.6 1.3 0.0017 18.1 0.2 1.8 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family Chitin_bind_3 PF03067.10 gi|257387427|ref|YP_003177200.1| - 7.7e-40 137.1 0.2 1.4e-39 136.2 0.1 1.4 1 0 0 1 1 1 1 Chitin binding domain CBM_5_12 PF02839.9 gi|257387427|ref|YP_003177200.1| - 1.6e-27 94.7 38.9 1.7e-14 53.1 10.9 3.1 2 0 0 2 2 2 2 Carbohydrate binding domain CBM_5_12_2 PF14600.1 gi|257387427|ref|YP_003177200.1| - 0.041 13.5 16.0 0.69 9.5 2.3 2.6 2 0 0 2 2 2 0 Cellulose-binding domain FUSC-like PF12805.2 gi|257387428|ref|YP_003177201.1| - 2.6 6.8 5.6 3.2 6.6 3.9 1.1 1 0 0 1 1 1 0 FUSC-like inner membrane protein yccS HTH_5 PF01022.15 gi|257387429|ref|YP_003177202.1| - 2.4e-19 68.7 1.2 3.8e-14 52.0 0.0 2.7 3 0 0 3 3 3 2 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|257387429|ref|YP_003177202.1| - 2.4e-14 52.8 0.2 2.4e-12 46.4 0.1 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.14 gi|257387429|ref|YP_003177202.1| - 2.6e-10 39.8 0.1 2.5e-06 27.0 0.0 2.3 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|257387429|ref|YP_003177202.1| - 1.6e-09 36.9 0.0 1.9e-08 33.5 0.0 2.4 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|257387429|ref|YP_003177202.1| - 1.1e-08 34.6 0.2 4.8e-08 32.5 0.1 2.1 2 0 0 2 2 2 1 MarR family MarR PF01047.17 gi|257387429|ref|YP_003177202.1| - 3.2e-07 29.9 0.1 1.2e-06 28.1 0.0 1.9 2 0 0 2 2 2 1 MarR family Rrf2 PF02082.15 gi|257387429|ref|YP_003177202.1| - 3.2e-07 30.3 0.0 0.0019 18.2 0.0 2.3 2 0 0 2 2 2 2 Transcriptional regulator HTH_Crp_2 PF13545.1 gi|257387429|ref|YP_003177202.1| - 4.1e-06 26.4 0.0 0.0013 18.4 0.0 2.5 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_11 PF08279.7 gi|257387429|ref|YP_003177202.1| - 1.1e-05 24.9 0.0 2.8e-05 23.6 0.0 1.7 1 0 0 1 1 1 1 HTH domain HTH_27 PF13463.1 gi|257387429|ref|YP_003177202.1| - 2.9e-05 24.2 0.1 0.00032 20.9 0.0 2.2 2 0 0 2 2 2 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.14 gi|257387429|ref|YP_003177202.1| - 4.7e-05 23.2 0.0 0.0013 18.6 0.0 2.4 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain Sulfolobus_pRN PF05584.6 gi|257387429|ref|YP_003177202.1| - 5.4e-05 23.0 0.0 0.13 12.2 0.0 2.5 3 0 0 3 3 2 2 Sulfolobus plasmid regulatory protein HTH_CodY PF08222.6 gi|257387429|ref|YP_003177202.1| - 0.00018 20.7 0.0 0.00051 19.3 0.0 1.7 2 0 0 2 2 1 1 CodY helix-turn-helix domain DUF2250 PF10007.4 gi|257387429|ref|YP_003177202.1| - 0.00039 20.2 0.0 0.1 12.5 0.0 2.3 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) PadR PF03551.9 gi|257387429|ref|YP_003177202.1| - 0.00048 19.8 0.7 0.0036 17.0 0.0 2.7 3 1 0 3 3 3 1 Transcriptional regulator PadR-like family LexA_DNA_bind PF01726.11 gi|257387429|ref|YP_003177202.1| - 0.0011 18.4 0.2 0.031 13.8 0.0 2.7 3 0 0 3 3 3 1 LexA DNA binding domain DUF4423 PF14394.1 gi|257387429|ref|YP_003177202.1| - 0.0012 18.4 0.0 0.7 9.4 0.0 2.3 2 0 0 2 2 2 1 Domain of unknown function (DUF4423) GntR PF00392.16 gi|257387429|ref|YP_003177202.1| - 0.0014 18.0 0.6 1.5 8.3 0.0 3.0 3 0 0 3 3 3 1 Bacterial regulatory proteins, gntR family DUF2513 PF10711.4 gi|257387429|ref|YP_003177202.1| - 0.0015 18.5 0.0 0.029 14.4 0.0 2.3 2 0 0 2 2 2 1 Hypothetical protein (DUF2513) HTH_23 PF13384.1 gi|257387429|ref|YP_003177202.1| - 0.0058 16.2 0.1 0.055 13.1 0.0 2.4 2 0 0 2 2 2 1 Homeodomain-like domain HTH_28 PF13518.1 gi|257387429|ref|YP_003177202.1| - 0.0059 16.5 0.2 0.9 9.6 0.1 2.6 2 0 0 2 2 2 1 Helix-turn-helix domain HxlR PF01638.12 gi|257387429|ref|YP_003177202.1| - 0.0087 15.6 0.0 0.2 11.3 0.0 2.5 3 0 0 3 3 3 1 HxlR-like helix-turn-helix HTH_IclR PF09339.5 gi|257387429|ref|YP_003177202.1| - 0.0095 15.5 0.0 0.13 11.8 0.0 2.7 2 1 0 2 2 2 1 IclR helix-turn-helix domain HemN_C PF06969.11 gi|257387429|ref|YP_003177202.1| - 0.01 15.8 0.7 8.5 6.5 0.0 3.3 3 1 0 3 3 3 0 HemN C-terminal domain HTH_9 PF08221.6 gi|257387429|ref|YP_003177202.1| - 0.011 15.5 0.0 0.071 12.9 0.0 2.0 2 0 0 2 2 2 0 RNA polymerase III subunit RPC82 helix-turn-helix domain ArsR PF09824.4 gi|257387429|ref|YP_003177202.1| - 0.013 14.8 0.0 0.085 12.1 0.0 2.0 2 1 0 2 2 2 0 ArsR transcriptional regulator FeoC PF09012.5 gi|257387429|ref|YP_003177202.1| - 0.023 14.4 0.0 11 5.8 0.0 2.6 3 0 0 3 3 2 0 FeoC like transcriptional regulator HTH_10 PF04967.7 gi|257387429|ref|YP_003177202.1| - 0.027 14.0 0.0 0.08 12.5 0.0 1.8 2 0 0 2 2 1 0 HTH DNA binding domain B-block_TFIIIC PF04182.7 gi|257387429|ref|YP_003177202.1| - 0.029 14.2 0.1 0.078 12.8 0.0 1.7 2 0 0 2 2 1 0 B-block binding subunit of TFIIIC HTH_34 PF13601.1 gi|257387429|ref|YP_003177202.1| - 0.031 14.3 0.0 0.1 12.6 0.0 1.9 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_36 PF13730.1 gi|257387429|ref|YP_003177202.1| - 0.036 14.2 0.1 0.087 12.9 0.0 1.8 2 0 0 2 2 1 0 Helix-turn-helix domain DUF2582 PF10771.4 gi|257387429|ref|YP_003177202.1| - 0.038 13.8 0.1 0.084 12.7 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2582) HTH_DeoR PF08220.7 gi|257387429|ref|YP_003177202.1| - 0.057 12.9 0.0 0.54 9.8 0.0 2.3 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain RPA_C PF08784.6 gi|257387429|ref|YP_003177202.1| - 0.073 13.4 0.0 13 6.3 0.0 2.5 2 0 0 2 2 2 0 Replication protein A C terminal FaeA PF04703.7 gi|257387429|ref|YP_003177202.1| - 0.089 12.9 0.0 0.24 11.5 0.0 1.7 1 0 0 1 1 1 0 FaeA-like protein HTH_29 PF13551.1 gi|257387429|ref|YP_003177202.1| - 0.1 12.7 0.6 1.6 8.9 0.1 2.5 2 1 0 2 2 2 0 Winged helix-turn helix DDRGK PF09756.4 gi|257387429|ref|YP_003177202.1| - 0.11 11.9 0.0 0.23 10.8 0.0 1.4 1 0 0 1 1 1 0 DDRGK domain Fmp27_WPPW PF10359.4 gi|257387430|ref|YP_003177203.1| - 0.28 9.5 1.4 0.47 8.7 1.0 1.2 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain DUF1266 PF06889.6 gi|257387431|ref|YP_003177204.1| - 0.15 11.8 0.0 0.21 11.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1266) Fmp27_WPPW PF10359.4 gi|257387432|ref|YP_003177205.1| - 0.017 13.5 4.4 0.022 13.1 3.1 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain Troponin PF00992.15 gi|257387432|ref|YP_003177205.1| - 0.031 14.3 7.4 0.058 13.4 5.1 1.3 1 0 0 1 1 1 0 Troponin IncA PF04156.9 gi|257387432|ref|YP_003177205.1| - 0.038 13.6 8.9 0.06 12.9 6.2 1.2 1 0 0 1 1 1 0 IncA protein eRF1_2 PF03464.10 gi|257387432|ref|YP_003177205.1| - 0.11 12.8 0.0 0.21 11.8 0.0 1.5 1 0 0 1 1 1 0 eRF1 domain 2 Mnd1 PF03962.10 gi|257387432|ref|YP_003177205.1| - 0.14 11.8 6.2 0.22 11.1 4.3 1.2 1 0 0 1 1 1 0 Mnd1 family DUF4164 PF13747.1 gi|257387432|ref|YP_003177205.1| - 0.26 11.4 13.4 1.7 8.7 2.9 3.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4164) DUF4407 PF14362.1 gi|257387432|ref|YP_003177205.1| - 0.39 9.6 4.4 0.67 8.8 2.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4407) ADIP PF11559.3 gi|257387432|ref|YP_003177205.1| - 0.56 10.1 6.0 0.88 9.4 4.1 1.3 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding bZIP_2 PF07716.10 gi|257387432|ref|YP_003177205.1| - 0.68 9.8 10.6 2.4 8.0 1.2 2.3 2 0 0 2 2 2 0 Basic region leucine zipper Mei5 PF10376.4 gi|257387432|ref|YP_003177205.1| - 1 8.8 7.5 1.5 8.3 5.2 1.1 1 0 0 1 1 1 0 Double-strand recombination repair protein WD40_alt PF14077.1 gi|257387432|ref|YP_003177205.1| - 4.1 7.1 10.1 1.4 8.6 1.2 2.4 2 0 0 2 2 2 0 Alternative WD40 repeat motif DUF904 PF06005.7 gi|257387432|ref|YP_003177205.1| - 5.5 7.3 9.4 1.6e+02 2.6 6.5 2.4 1 1 0 1 1 1 0 Protein of unknown function (DUF904) DUF4140 PF13600.1 gi|257387432|ref|YP_003177205.1| - 9 6.8 11.9 19 5.7 1.9 2.5 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) DUF1611 PF07755.6 gi|257387433|ref|YP_003177206.1| - 3.6e-109 364.0 0.3 4.2e-109 363.8 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1611) MR_MLE PF01188.16 gi|257387434|ref|YP_003177207.1| - 9.2e-18 64.5 3.0 9.2e-18 64.5 2.1 2.2 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MR_MLE_C PF13378.1 gi|257387434|ref|YP_003177207.1| - 1.8e-13 50.4 0.8 5e-13 49.0 0.2 2.0 2 0 0 2 2 2 1 Enolase C-terminal domain-like MR_MLE_N PF02746.11 gi|257387434|ref|YP_003177207.1| - 3.5e-10 39.8 0.1 8.1e-10 38.7 0.1 1.6 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MAAL_C PF07476.6 gi|257387434|ref|YP_003177207.1| - 9.2e-05 21.4 0.0 0.00016 20.6 0.0 1.4 1 0 0 1 1 1 1 Methylaspartate ammonia-lyase C-terminus DUF2514 PF10721.4 gi|257387435|ref|YP_003177208.1| - 0.08 12.6 1.6 0.18 11.4 1.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2514) Hexapep PF00132.19 gi|257387436|ref|YP_003177209.1| - 1.7e-15 55.7 10.5 1.3e-05 24.5 0.3 4.2 3 1 2 5 5 5 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|257387436|ref|YP_003177209.1| - 1.8e-06 27.4 7.5 0.003 17.0 0.2 3.5 2 1 1 3 3 3 3 Hexapeptide repeat of succinyl-transferase Peptidase_S24 PF00717.18 gi|257387437|ref|YP_003177210.1| - 4e-06 26.3 0.1 8.6e-06 25.3 0.0 1.6 1 0 0 1 1 1 1 Peptidase S24-like DUF3188 PF11384.3 gi|257387437|ref|YP_003177210.1| - 3.3 7.3 9.2 1.2 8.8 0.4 3.6 3 0 0 3 3 3 0 Protein of unknown function (DUF3188) Rhomboid PF01694.17 gi|257387438|ref|YP_003177211.1| - 0.012 15.5 24.9 0.2 11.7 7.6 2.4 2 1 1 3 3 3 0 Rhomboid family CARDB PF07705.6 gi|257387439|ref|YP_003177212.1| - 1.5e-08 34.6 1.1 8.7e-06 25.7 0.3 2.8 3 0 0 3 3 3 2 CARDB DUF3416 PF11896.3 gi|257387439|ref|YP_003177212.1| - 0.036 14.0 0.0 0.069 13.0 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF3416) Transglut_C PF00927.17 gi|257387439|ref|YP_003177212.1| - 0.052 13.5 0.1 0.16 12.0 0.1 1.8 1 0 0 1 1 1 0 Transglutaminase family, C-terminal ig like domain DUF1102 PF06510.6 gi|257387439|ref|YP_003177212.1| - 0.081 12.7 0.1 0.65 9.7 0.0 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF1102) DUF3642 PF12182.3 gi|257387440|ref|YP_003177213.1| - 0.15 12.4 1.8 0.42 11.0 1.3 1.9 1 1 0 1 1 1 0 Bacterial lipoprotein DUF4307 PF14155.1 gi|257387441|ref|YP_003177214.1| - 1.4 8.6 7.1 0.14 11.9 0.3 2.6 3 1 0 3 3 3 0 Domain of unknown function (DUF4307) RicinB_lectin_2 PF14200.1 gi|257387442|ref|YP_003177215.1| - 6.8e-12 45.6 0.4 4.3e-07 30.2 0.2 2.6 1 1 1 2 2 2 2 Ricin-type beta-trefoil lectin domain-like Ricin_B_lectin PF00652.17 gi|257387442|ref|YP_003177215.1| - 0.0013 18.7 0.0 1.2 9.1 0.0 2.3 1 1 0 2 2 2 2 Ricin-type beta-trefoil lectin domain Usp PF00582.21 gi|257387443|ref|YP_003177216.1| - 2.3e-29 102.4 1.8 2.5e-29 102.2 1.3 1.0 1 0 0 1 1 1 1 Universal stress protein family tRNA-synt_2b PF00587.20 gi|257387444|ref|YP_003177217.1| - 1.7e-39 135.1 0.0 3.5e-39 134.1 0.0 1.5 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.15 gi|257387444|ref|YP_003177217.1| - 2.5e-17 62.6 1.9 2.6e-17 62.5 0.4 1.8 2 0 0 2 2 2 1 Anticodon binding domain TGS PF02824.16 gi|257387444|ref|YP_003177217.1| - 1.7e-14 53.3 0.5 4e-14 52.1 0.0 1.9 2 0 0 2 2 2 1 TGS domain tRNA_SAD PF07973.9 gi|257387444|ref|YP_003177217.1| - 3.1e-13 49.3 0.0 5.9e-13 48.4 0.0 1.5 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_His PF13393.1 gi|257387444|ref|YP_003177217.1| - 0.022 13.8 0.0 0.04 12.9 0.0 1.3 1 0 0 1 1 1 0 Histidyl-tRNA synthetase ThiS PF02597.15 gi|257387444|ref|YP_003177217.1| - 0.2 12.1 2.0 2.7 8.4 0.0 3.0 3 0 0 3 3 3 0 ThiS family Tbf5 PF06331.7 gi|257387444|ref|YP_003177217.1| - 0.61 9.8 3.9 9.1 6.1 0.7 3.0 2 0 0 2 2 2 0 Transcription factor TFIIH complex subunit Tfb5 PspA_IM30 PF04012.7 gi|257387446|ref|YP_003177219.1| - 1.9e-33 115.7 37.5 3e-33 115.0 26.0 1.3 1 0 0 1 1 1 1 PspA/IM30 family Snf7 PF03357.16 gi|257387446|ref|YP_003177219.1| - 0.00031 20.1 19.6 0.00031 20.1 13.6 4.3 1 1 2 3 3 3 1 Snf7 Phage_GP20 PF06810.6 gi|257387446|ref|YP_003177219.1| - 0.0064 15.9 18.1 0.0064 15.9 12.6 3.8 1 1 3 4 4 4 1 Phage minor structural protein GP20 AAA_13 PF13166.1 gi|257387446|ref|YP_003177219.1| - 0.045 12.2 28.1 0.023 13.1 17.6 1.6 1 1 1 2 2 2 0 AAA domain DUF2217 PF10265.4 gi|257387446|ref|YP_003177219.1| - 0.33 9.6 15.2 0.42 9.3 10.6 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2217) DUF3584 PF12128.3 gi|257387446|ref|YP_003177219.1| - 1 6.6 42.1 0.56 7.4 27.8 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3584) Snapin_Pallidin PF14712.1 gi|257387446|ref|YP_003177219.1| - 1.3 9.4 26.9 0.089 13.1 6.9 3.5 2 1 1 3 3 3 0 Snapin/Pallidin Spc7 PF08317.6 gi|257387446|ref|YP_003177219.1| - 1.7 7.2 37.0 0.01 14.5 17.8 2.1 1 1 0 2 2 2 0 Spc7 kinetochore protein IncA PF04156.9 gi|257387446|ref|YP_003177219.1| - 1.7 8.1 44.6 0.16 11.5 3.4 3.3 2 1 0 3 3 3 0 IncA protein DUF972 PF06156.8 gi|257387446|ref|YP_003177219.1| - 2.2 8.6 31.7 2.3 8.5 5.4 3.5 1 1 2 3 3 3 0 Protein of unknown function (DUF972) NPV_P10 PF05531.7 gi|257387446|ref|YP_003177219.1| - 2.4 8.4 17.5 6.3 7.1 0.3 4.1 2 1 1 3 3 3 0 Nucleopolyhedrovirus P10 protein DUF948 PF06103.6 gi|257387446|ref|YP_003177219.1| - 2.6 7.9 12.5 5.6 6.8 3.5 3.5 1 1 1 3 3 3 0 Bacterial protein of unknown function (DUF948) DUF3450 PF11932.3 gi|257387446|ref|YP_003177219.1| - 5.4 6.2 33.7 0.89 8.7 4.6 2.9 1 1 0 2 2 2 0 Protein of unknown function (DUF3450) DUF479 PF04336.7 gi|257387446|ref|YP_003177219.1| - 5.7 7.1 12.6 8.8 6.4 1.0 3.3 1 1 2 3 3 3 0 Protein of unknown function, DUF479 Flagellin_C PF00700.16 gi|257387446|ref|YP_003177219.1| - 9 6.5 17.6 12 6.1 3.4 3.7 2 1 2 4 4 3 0 Bacterial flagellin C-terminal helical region ADIP PF11559.3 gi|257387446|ref|YP_003177219.1| - 10 6.0 33.6 1.9 8.3 5.1 3.0 1 1 2 3 3 3 0 Afadin- and alpha -actinin-Binding Abhydrolase_5 PF12695.2 gi|257387447|ref|YP_003177220.1| - 4.5e-14 52.4 0.1 5.8e-14 52.0 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|257387447|ref|YP_003177220.1| - 3.7e-08 33.5 9.4 9.5e-05 22.3 3.7 2.1 1 1 1 2 2 2 2 Alpha/beta hydrolase family DLH PF01738.13 gi|257387447|ref|YP_003177220.1| - 9.2e-05 21.8 0.0 0.00012 21.5 0.0 1.1 1 0 0 1 1 1 1 Dienelactone hydrolase family Abhydrolase_3 PF07859.8 gi|257387447|ref|YP_003177220.1| - 0.00047 19.7 0.0 0.00053 19.6 0.0 1.2 1 0 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_1 PF00561.15 gi|257387447|ref|YP_003177220.1| - 0.0029 17.2 0.4 1.3 8.4 0.2 2.9 2 1 1 3 3 3 1 alpha/beta hydrolase fold Peptidase_S15 PF02129.13 gi|257387447|ref|YP_003177220.1| - 0.0047 16.3 0.0 0.0064 15.9 0.0 1.1 1 0 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) VirJ PF06057.6 gi|257387447|ref|YP_003177220.1| - 0.027 14.2 0.0 2.5 7.8 0.0 2.1 2 0 0 2 2 2 0 Bacterial virulence protein (VirJ) Peripla_BP_3 PF13377.1 gi|257387447|ref|YP_003177220.1| - 0.04 13.9 0.8 0.057 13.4 0.2 1.5 2 0 0 2 2 2 0 Periplasmic binding protein-like domain Lipase_3 PF01764.20 gi|257387447|ref|YP_003177220.1| - 0.091 12.3 0.0 0.13 11.9 0.0 1.2 1 0 0 1 1 1 0 Lipase (class 3) BAAT_C PF08840.6 gi|257387447|ref|YP_003177220.1| - 0.14 11.8 0.0 0.31 10.7 0.0 1.3 1 1 0 1 1 1 0 BAAT / Acyl-CoA thioester hydrolase C terminal Abhydrolase_2 PF02230.11 gi|257387447|ref|YP_003177220.1| - 0.15 11.5 0.0 0.19 11.1 0.0 1.1 1 0 0 1 1 1 0 Phospholipase/Carboxylesterase Esterase PF00756.15 gi|257387447|ref|YP_003177220.1| - 0.16 11.3 0.0 0.19 11.1 0.0 1.2 1 0 0 1 1 1 0 Putative esterase Thioesterase PF00975.15 gi|257387447|ref|YP_003177220.1| - 0.17 12.0 0.8 0.29 11.3 0.5 1.5 1 1 0 1 1 1 0 Thioesterase domain CTP_synth_N PF06418.9 gi|257387448|ref|YP_003177221.1| - 8.3e-127 421.9 0.1 1.2e-126 421.4 0.1 1.2 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.23 gi|257387448|ref|YP_003177221.1| - 5.7e-51 172.7 0.0 1.1e-50 171.7 0.0 1.5 2 0 0 2 2 2 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|257387448|ref|YP_003177221.1| - 1.3e-09 37.8 0.0 2.3e-09 36.9 0.0 1.4 1 0 0 1 1 1 1 Peptidase C26 CbiA PF01656.18 gi|257387448|ref|YP_003177221.1| - 9e-09 35.0 0.1 2e-08 33.9 0.1 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain GATase_3 PF07685.9 gi|257387448|ref|YP_003177221.1| - 0.011 15.3 0.0 0.027 14.0 0.0 1.7 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain Glyco_hydro_3_C PF01915.17 gi|257387448|ref|YP_003177221.1| - 0.056 12.9 0.1 0.9 9.0 0.0 2.1 2 0 0 2 2 2 0 Glycosyl hydrolase family 3 C-terminal domain Lipase_chap PF03280.9 gi|257387448|ref|YP_003177221.1| - 0.069 12.6 0.0 0.12 11.9 0.0 1.3 1 0 0 1 1 1 0 Proteobacterial lipase chaperone protein GMP_synt_C PF00958.17 gi|257387449|ref|YP_003177222.1| - 5.3e-29 99.7 0.5 9.7e-29 98.9 0.1 1.7 2 0 0 2 2 2 1 GMP synthase C terminal domain NAD_synthase PF02540.12 gi|257387449|ref|YP_003177222.1| - 4.4e-09 35.5 0.0 9.3e-06 24.7 0.0 2.2 2 0 0 2 2 2 2 NAD synthase tRNA_Me_trans PF03054.11 gi|257387449|ref|YP_003177222.1| - 0.00018 20.2 0.0 0.003 16.1 0.0 2.1 2 0 0 2 2 2 1 tRNA methyl transferase Asn_synthase PF00733.16 gi|257387449|ref|YP_003177222.1| - 0.00019 20.9 0.0 0.00039 20.0 0.0 1.5 1 0 0 1 1 1 1 Asparagine synthase ThiI PF02568.9 gi|257387449|ref|YP_003177222.1| - 0.0097 15.3 0.0 0.025 14.0 0.0 1.6 1 1 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) QueC PF06508.8 gi|257387449|ref|YP_003177222.1| - 0.011 14.9 0.0 0.038 13.2 0.0 1.8 1 1 1 2 2 2 0 Queuosine biosynthesis protein QueC PAPS_reduct PF01507.14 gi|257387449|ref|YP_003177222.1| - 0.088 12.6 0.0 0.17 11.7 0.0 1.5 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family TrkA_N PF02254.13 gi|257387450|ref|YP_003177223.1| - 0.0094 15.9 0.0 0.011 15.6 0.0 1.1 1 0 0 1 1 1 1 TrkA-N domain PSII_BNR PF14870.1 gi|257387453|ref|YP_003177226.1| - 2.7e-06 26.6 11.0 0.0012 17.9 0.3 3.9 1 1 4 5 5 5 4 Photosynthesis system II assembly factor YCF48 TAT_signal PF10518.4 gi|257387453|ref|YP_003177226.1| - 0.034 14.1 3.9 0.034 14.1 2.7 3.0 4 0 0 4 4 4 0 TAT (twin-arginine translocation) pathway signal sequence Lactamase_B PF00753.22 gi|257387454|ref|YP_003177227.1| - 1.9e-19 70.1 3.9 2.3e-19 69.8 2.7 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|257387454|ref|YP_003177227.1| - 1.7e-05 24.4 0.0 2.2e-05 24.1 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_5 PF14597.1 gi|257387454|ref|YP_003177227.1| - 0.019 14.3 0.0 0.043 13.2 0.0 1.6 2 0 0 2 2 2 0 Metallo-beta-lactamase superfamily Hemagglutinin PF00509.13 gi|257387454|ref|YP_003177227.1| - 0.15 10.2 0.0 0.21 9.7 0.0 1.1 1 0 0 1 1 1 0 Haemagglutinin MoCF_biosynth PF00994.19 gi|257387455|ref|YP_003177228.1| - 2.4e-15 56.1 0.9 3.7e-15 55.5 0.7 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain ADH_zinc_N PF00107.21 gi|257387457|ref|YP_003177230.1| - 1.4e-38 131.3 0.4 3.8e-38 129.9 0.3 1.8 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.7 gi|257387457|ref|YP_003177230.1| - 1.4e-24 85.9 0.1 2.7e-24 85.0 0.0 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N_2 PF13602.1 gi|257387457|ref|YP_003177230.1| - 4.3e-18 66.4 0.1 8.7e-18 65.4 0.1 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Eno-Rase_NADH_b PF12242.3 gi|257387457|ref|YP_003177230.1| - 0.00041 20.0 0.3 0.0011 18.7 0.2 1.7 1 0 0 1 1 1 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase DapB_N PF01113.15 gi|257387457|ref|YP_003177230.1| - 0.0011 18.8 0.3 0.0023 17.8 0.2 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus NAD_binding_10 PF13460.1 gi|257387457|ref|YP_003177230.1| - 0.003 17.6 2.1 0.005 16.8 1.5 1.4 1 0 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|257387457|ref|YP_003177230.1| - 0.035 14.0 5.9 0.099 12.5 3.9 1.8 2 0 0 2 2 2 0 short chain dehydrogenase 2-Hacid_dh_C PF02826.14 gi|257387457|ref|YP_003177230.1| - 0.077 12.1 0.0 0.12 11.5 0.0 1.2 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain THF_DHG_CYH_C PF02882.14 gi|257387457|ref|YP_003177230.1| - 0.1 11.6 1.3 0.52 9.3 0.1 2.2 1 1 1 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Semialdhyde_dh PF01118.19 gi|257387457|ref|YP_003177230.1| - 0.11 12.8 0.2 0.18 12.1 0.1 1.3 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain NADH_4Fe-4S PF10589.4 gi|257387457|ref|YP_003177230.1| - 0.41 9.8 3.8 0.64 9.2 2.0 1.8 2 0 0 2 2 2 0 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region DUF3339 PF11820.3 gi|257387458|ref|YP_003177231.1| - 0.0076 16.5 1.8 0.0087 16.3 1.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3339) ABC_tran PF00005.22 gi|257387459|ref|YP_003177232.1| - 3.1e-36 124.7 0.0 4.7e-36 124.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|257387459|ref|YP_003177232.1| - 1.1e-09 38.6 0.0 2.5e-05 24.3 0.0 2.1 2 0 0 2 2 2 2 AAA domain TOBE_2 PF08402.5 gi|257387459|ref|YP_003177232.1| - 1.7e-09 37.5 0.5 8.1e-09 35.3 0.3 2.3 1 0 0 1 1 1 1 TOBE domain AAA_16 PF13191.1 gi|257387459|ref|YP_003177232.1| - 4.5e-06 26.7 1.4 1.7e-05 24.8 1.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.14 gi|257387459|ref|YP_003177232.1| - 7.4e-06 25.3 0.0 1.3e-05 24.5 0.0 1.3 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA PF00004.24 gi|257387459|ref|YP_003177232.1| - 1.9e-05 24.8 0.0 0.00012 22.3 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.1 gi|257387459|ref|YP_003177232.1| - 8e-05 22.1 0.1 0.00059 19.2 0.1 2.1 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|257387459|ref|YP_003177232.1| - 0.00022 20.4 0.0 0.00041 19.5 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|257387459|ref|YP_003177232.1| - 0.0012 18.3 0.0 0.0026 17.2 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_19 PF13245.1 gi|257387459|ref|YP_003177232.1| - 0.0027 17.4 0.3 0.011 15.4 0.0 2.1 2 0 0 2 2 2 1 Part of AAA domain AAA_17 PF13207.1 gi|257387459|ref|YP_003177232.1| - 0.0028 18.4 0.3 0.0059 17.4 0.2 1.7 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.1 gi|257387459|ref|YP_003177232.1| - 0.0039 17.5 0.0 0.0065 16.8 0.0 1.2 1 0 0 1 1 1 1 AAA domain ATP-synt_ab PF00006.20 gi|257387459|ref|YP_003177232.1| - 0.005 16.3 0.0 0.0083 15.6 0.0 1.3 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain UPF0079 PF02367.12 gi|257387459|ref|YP_003177232.1| - 0.0086 15.7 0.0 0.018 14.6 0.0 1.5 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 AAA_5 PF07728.9 gi|257387459|ref|YP_003177232.1| - 0.014 15.0 0.1 0.034 13.8 0.0 1.8 1 1 0 2 2 2 0 AAA domain (dynein-related subfamily) NB-ARC PF00931.17 gi|257387459|ref|YP_003177232.1| - 0.015 14.1 0.0 0.023 13.5 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain Rad17 PF03215.10 gi|257387459|ref|YP_003177232.1| - 0.017 13.8 0.0 0.023 13.4 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein Mg_chelatase PF01078.16 gi|257387459|ref|YP_003177232.1| - 0.017 14.2 0.0 0.072 12.2 0.0 1.9 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_28 PF13521.1 gi|257387459|ref|YP_003177232.1| - 0.021 14.7 0.0 0.058 13.3 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|257387459|ref|YP_003177232.1| - 0.022 14.6 0.0 0.089 12.6 0.0 2.1 3 0 0 3 3 1 0 AAA domain AAA_18 PF13238.1 gi|257387459|ref|YP_003177232.1| - 0.038 14.3 0.0 0.066 13.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|257387459|ref|YP_003177232.1| - 0.041 14.0 0.2 0.13 12.4 0.1 1.9 1 1 0 1 1 1 0 AAA domain PduV-EutP PF10662.4 gi|257387459|ref|YP_003177232.1| - 0.053 13.0 0.1 0.11 11.9 0.0 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_15 PF13175.1 gi|257387459|ref|YP_003177232.1| - 0.061 12.3 0.0 2.8 6.8 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_33 PF13671.1 gi|257387459|ref|YP_003177232.1| - 0.061 13.1 0.0 0.15 11.9 0.0 1.7 1 0 0 1 1 1 0 AAA domain KaiC PF06745.8 gi|257387459|ref|YP_003177232.1| - 0.066 12.3 0.3 7.4 5.6 0.0 2.1 2 0 0 2 2 2 0 KaiC NTPase_1 PF03266.10 gi|257387459|ref|YP_003177232.1| - 0.075 12.7 0.0 0.46 10.1 0.0 2.0 2 0 0 2 2 2 0 NTPase NACHT PF05729.7 gi|257387459|ref|YP_003177232.1| - 0.076 12.6 0.1 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 NACHT domain AAA_30 PF13604.1 gi|257387459|ref|YP_003177232.1| - 0.095 12.2 0.0 0.23 11.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain PRK PF00485.13 gi|257387459|ref|YP_003177232.1| - 0.11 11.9 0.0 0.2 11.1 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family RNA_helicase PF00910.17 gi|257387459|ref|YP_003177232.1| - 0.15 12.2 0.0 0.25 11.5 0.0 1.3 1 0 0 1 1 1 0 RNA helicase TOBE PF03459.12 gi|257387459|ref|YP_003177232.1| - 0.5 10.5 6.4 1.3 9.1 0.8 2.9 3 0 0 3 3 2 0 TOBE domain BPD_transp_1 PF00528.17 gi|257387460|ref|YP_003177233.1| - 1.2e-15 57.5 15.2 1.2e-15 57.5 10.5 1.4 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_11 PF13531.1 gi|257387461|ref|YP_003177234.1| - 2.6e-24 86.1 0.1 3e-24 85.9 0.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|257387461|ref|YP_003177234.1| - 0.012 15.3 0.0 0.015 15.0 0.0 1.3 1 1 0 1 1 1 0 Bacterial extracellular solute-binding protein TOBE PF03459.12 gi|257387462|ref|YP_003177235.1| - 2e-15 56.6 2.1 2e-15 56.6 1.5 2.8 3 0 0 3 3 3 2 TOBE domain HTH_1 PF00126.22 gi|257387462|ref|YP_003177235.1| - 7.3e-08 32.0 0.7 7.3e-08 32.0 0.5 2.1 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family TOBE_2 PF08402.5 gi|257387462|ref|YP_003177235.1| - 0.00018 21.4 6.7 0.0041 17.0 0.3 2.8 2 1 0 2 2 2 2 TOBE domain DUF1930 PF09122.5 gi|257387462|ref|YP_003177235.1| - 0.72 9.6 3.2 14 5.5 0.1 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF1930) AsnC_trans_reg PF01037.16 gi|257387463|ref|YP_003177236.1| - 6.5e-11 41.7 0.1 7.1e-11 41.6 0.0 1.0 1 0 0 1 1 1 1 AsnC family Yip1 PF04893.12 gi|257387464|ref|YP_003177237.1| - 0.043 13.3 8.7 0.055 12.9 6.0 1.2 1 0 0 1 1 1 0 Yip1 domain Polysacc_synt_3 PF13440.1 gi|257387464|ref|YP_003177237.1| - 0.13 11.7 11.0 0.15 11.4 7.6 1.1 1 0 0 1 1 1 0 Polysaccharide biosynthesis protein Mem_trans PF03547.13 gi|257387464|ref|YP_003177237.1| - 0.15 10.3 3.3 0.17 10.1 2.3 1.0 1 0 0 1 1 1 0 Membrane transport protein YqhR PF11085.3 gi|257387464|ref|YP_003177237.1| - 0.37 10.3 4.7 0.45 10.0 3.3 1.1 1 0 0 1 1 1 0 Conserved membrane protein YqhR DUF202 PF02656.10 gi|257387464|ref|YP_003177237.1| - 2 8.7 6.1 13 6.0 4.2 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF202) DUF4117 PF13491.1 gi|257387464|ref|YP_003177237.1| - 3.2 7.1 9.1 3.9 6.8 6.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4117) ABC2_membrane_4 PF12730.2 gi|257387464|ref|YP_003177237.1| - 4.3 6.4 11.4 4.9 6.2 7.9 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein NAD_binding_10 PF13460.1 gi|257387465|ref|YP_003177238.1| - 1.9e-30 106.2 0.0 2.4e-30 105.9 0.0 1.1 1 0 0 1 1 1 1 NADH(P)-binding Epimerase PF01370.16 gi|257387465|ref|YP_003177238.1| - 1.4e-18 67.2 0.0 7.1e-18 64.9 0.0 1.9 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|257387465|ref|YP_003177238.1| - 8e-15 54.2 0.0 2.3e-13 49.4 0.0 2.1 1 1 1 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|257387465|ref|YP_003177238.1| - 7.5e-11 41.4 0.0 0.00015 20.7 0.0 2.5 2 1 0 2 2 2 2 RmlD substrate binding domain NmrA PF05368.8 gi|257387465|ref|YP_003177238.1| - 8e-10 38.3 0.0 9.5e-10 38.1 0.0 1.2 1 0 0 1 1 1 1 NmrA-like family NAD_binding_4 PF07993.7 gi|257387465|ref|YP_003177238.1| - 1e-07 31.1 0.0 0.0016 17.3 0.0 2.3 1 1 0 2 2 2 2 Male sterility protein adh_short PF00106.20 gi|257387465|ref|YP_003177238.1| - 7.6e-06 25.9 0.6 2e-05 24.5 0.3 1.7 2 0 0 2 2 2 1 short chain dehydrogenase Glyco_trans_4_4 PF13579.1 gi|257387465|ref|YP_003177238.1| - 0.00018 21.6 0.1 0.00096 19.3 0.0 2.2 2 1 1 3 3 3 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|257387465|ref|YP_003177238.1| - 0.0012 18.5 0.0 0.002 17.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Polysacc_synt_2 PF02719.10 gi|257387465|ref|YP_003177238.1| - 0.0016 17.4 0.0 0.016 14.1 0.0 2.0 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein Saccharop_dh PF03435.13 gi|257387465|ref|YP_003177238.1| - 0.0045 16.0 0.2 0.0068 15.4 0.1 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase TrkA_N PF02254.13 gi|257387465|ref|YP_003177238.1| - 0.0056 16.6 0.0 0.012 15.5 0.0 1.5 1 0 0 1 1 1 1 TrkA-N domain NAD_binding_2 PF03446.10 gi|257387465|ref|YP_003177238.1| - 0.0058 16.4 0.0 0.017 14.9 0.0 1.7 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase Pyr_redox PF00070.22 gi|257387465|ref|YP_003177238.1| - 0.0059 16.9 0.0 0.016 15.5 0.0 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.11 gi|257387465|ref|YP_003177238.1| - 0.027 13.9 0.0 0.05 13.0 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA KR PF08659.5 gi|257387465|ref|YP_003177238.1| - 0.057 13.0 0.3 0.18 11.4 0.1 1.9 2 1 0 2 2 2 0 KR domain 3HCDH_N PF02737.13 gi|257387465|ref|YP_003177238.1| - 0.073 12.7 0.1 0.16 11.6 0.0 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Thymidylate_kin PF02223.12 gi|257387466|ref|YP_003177239.1| - 6.2e-39 133.3 0.0 7e-39 133.1 0.0 1.0 1 0 0 1 1 1 1 Thymidylate kinase AAA_33 PF13671.1 gi|257387466|ref|YP_003177239.1| - 5.7e-06 26.2 0.0 9.3e-06 25.5 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|257387466|ref|YP_003177239.1| - 0.00059 19.8 4.6 0.0028 17.6 3.2 1.8 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|257387466|ref|YP_003177239.1| - 0.0062 16.8 0.0 0.016 15.5 0.0 1.8 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|257387466|ref|YP_003177239.1| - 0.067 14.0 0.9 0.51 11.1 0.6 2.1 1 1 0 1 1 1 0 AAA domain Tubulin PF00091.20 gi|257387467|ref|YP_003177240.1| - 1.1e-25 90.7 0.1 2.2e-25 89.7 0.1 1.5 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain DUF4398 PF14346.1 gi|257387468|ref|YP_003177241.1| - 0.00011 22.1 7.4 0.0002 21.3 5.1 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4398) DUF4366 PF14283.1 gi|257387468|ref|YP_003177241.1| - 0.0035 16.7 2.5 0.038 13.4 0.0 2.3 2 1 0 2 2 2 1 Domain of unknown function (DUF4366) FliG_N PF14842.1 gi|257387468|ref|YP_003177241.1| - 0.02 15.0 0.2 0.049 13.7 0.2 1.6 1 0 0 1 1 1 0 FliG N-terminal domain PAP_PilO PF06864.7 gi|257387468|ref|YP_003177241.1| - 0.075 11.3 0.0 0.13 10.5 0.0 1.3 1 0 0 1 1 1 0 Pilin accessory protein (PilO) DUF912 PF06024.7 gi|257387468|ref|YP_003177241.1| - 0.12 12.3 0.4 0.38 10.8 0.3 1.9 1 1 0 1 1 1 0 Nucleopolyhedrovirus protein of unknown function (DUF912) PTS_IIA PF02255.11 gi|257387468|ref|YP_003177241.1| - 0.97 9.3 7.5 0.35 10.7 1.8 2.2 1 1 1 2 2 2 0 PTS system, Lactose/Cellobiose specific IIA subunit CofC PF01983.11 gi|257387469|ref|YP_003177242.1| - 1.8e-41 141.4 0.0 2.1e-41 141.2 0.0 1.0 1 0 0 1 1 1 1 Guanylyl transferase CofC like NTP_transf_3 PF12804.2 gi|257387469|ref|YP_003177242.1| - 2e-06 27.9 1.7 3.1e-06 27.3 1.2 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Radical_SAM PF04055.16 gi|257387470|ref|YP_003177243.1| - 1.3e-15 57.9 0.0 2.5e-15 57.0 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily HTH_10 PF04967.7 gi|257387471|ref|YP_003177244.1| - 2.9e-14 52.3 0.1 4.9e-14 51.6 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_24 PF13412.1 gi|257387471|ref|YP_003177244.1| - 8.8e-05 21.8 0.0 0.00017 20.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Sigma70_r4 PF04545.11 gi|257387471|ref|YP_003177244.1| - 0.0018 17.5 0.1 0.0067 15.7 0.0 2.0 2 0 0 2 2 2 1 Sigma-70, region 4 HrcA_DNA-bdg PF03444.10 gi|257387471|ref|YP_003177244.1| - 0.025 14.0 0.0 0.043 13.2 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_5 PF01022.15 gi|257387471|ref|YP_003177244.1| - 0.04 13.5 0.0 0.073 12.7 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_27 PF13463.1 gi|257387471|ref|YP_003177244.1| - 0.071 13.4 0.1 0.15 12.3 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain LexA_DNA_bind PF01726.11 gi|257387471|ref|YP_003177244.1| - 0.13 11.8 0.0 0.3 10.6 0.0 1.5 1 1 0 1 1 1 0 LexA DNA binding domain p450 PF00067.17 gi|257387472|ref|YP_003177245.1| - 2e-87 293.6 0.0 2.4e-87 293.3 0.0 1.0 1 0 0 1 1 1 1 Cytochrome P450 Umbravirus_LDM PF04817.7 gi|257387472|ref|YP_003177245.1| - 0.02 14.0 0.0 0.033 13.3 0.0 1.2 1 0 0 1 1 1 0 Umbravirus long distance movement (LDM) family Radical_SAM PF04055.16 gi|257387473|ref|YP_003177246.1| - 1.3e-11 45.0 0.0 2.8e-11 43.8 0.0 1.6 1 0 0 1 1 1 1 Radical SAM superfamily Na_Ca_ex PF01699.19 gi|257387474|ref|YP_003177247.1| - 1.1e-39 135.2 26.5 4.4e-21 74.9 7.7 2.1 2 0 0 2 2 2 2 Sodium/calcium exchanger protein SAICAR_synt PF01259.13 gi|257387475|ref|YP_003177248.1| - 8.1e-21 74.2 0.0 2e-20 72.9 0.0 1.5 1 1 0 1 1 1 1 SAICAR synthetase Formyl_trans_N PF00551.14 gi|257387476|ref|YP_003177249.1| - 2e-44 151.3 0.0 9.3e-44 149.1 0.0 1.9 2 0 0 2 2 2 1 Formyl transferase ACT_6 PF13740.1 gi|257387476|ref|YP_003177249.1| - 1e-09 37.9 0.3 2.7e-09 36.5 0.2 1.7 1 0 0 1 1 1 1 ACT domain ACT PF01842.20 gi|257387476|ref|YP_003177249.1| - 8.1e-07 28.3 0.6 3.3e-06 26.4 0.1 2.3 2 0 0 2 2 2 1 ACT domain ACT_4 PF13291.1 gi|257387476|ref|YP_003177249.1| - 0.00096 19.4 0.1 0.0024 18.1 0.1 1.6 1 0 0 1 1 1 1 ACT domain Glyco_transf_28 PF03033.15 gi|257387476|ref|YP_003177249.1| - 0.0027 17.4 0.0 0.01 15.5 0.0 2.0 2 1 0 2 2 2 1 Glycosyltransferase family 28 N-terminal domain DUF2653 PF10850.3 gi|257387476|ref|YP_003177249.1| - 0.09 13.0 0.2 1.6 9.1 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF2653) PKD PF00801.15 gi|257387477|ref|YP_003177250.1| - 0.001 18.7 12.7 0.0045 16.7 1.6 3.1 3 0 0 3 3 3 2 PKD domain Big_2 PF02368.13 gi|257387477|ref|YP_003177250.1| - 0.002 17.9 0.7 0.002 17.9 0.5 3.6 3 1 1 4 4 4 1 Bacterial Ig-like domain (group 2) RAP1 PF07218.6 gi|257387477|ref|YP_003177250.1| - 2.8 5.9 7.1 3.8 5.4 4.9 1.1 1 0 0 1 1 1 0 Rhoptry-associated protein 1 (RAP-1) Mucin PF01456.12 gi|257387478|ref|YP_003177251.1| - 0.0013 18.4 5.0 0.0017 18.1 3.5 1.4 1 0 0 1 1 1 1 Mucin-like glycoprotein PurS PF02700.9 gi|257387480|ref|YP_003177253.1| - 4.5e-24 84.1 0.0 5.1e-24 84.0 0.0 1.0 1 0 0 1 1 1 1 Phosphoribosylformylglycinamidine (FGAM) synthase AP_endonuc_2 PF01261.19 gi|257387480|ref|YP_003177253.1| - 0.034 13.4 0.1 0.037 13.2 0.1 1.1 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel GATase_5 PF13507.1 gi|257387481|ref|YP_003177254.1| - 4.4e-45 153.6 0.0 5.4e-45 153.3 0.0 1.0 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.23 gi|257387481|ref|YP_003177254.1| - 2.6e-07 30.2 0.0 3.1e-07 30.0 0.0 1.3 1 1 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.9 gi|257387481|ref|YP_003177254.1| - 1.2e-05 24.9 0.0 2.5e-05 23.9 0.0 1.5 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DUF4066 PF13278.1 gi|257387481|ref|YP_003177254.1| - 0.052 12.8 0.0 0.067 12.4 0.0 1.2 1 0 0 1 1 1 0 Putative amidotransferase DJ-1_PfpI PF01965.19 gi|257387481|ref|YP_003177254.1| - 0.054 12.9 0.0 0.081 12.3 0.0 1.3 1 0 0 1 1 1 0 DJ-1/PfpI family Peptidase_C26 PF07722.8 gi|257387481|ref|YP_003177254.1| - 0.099 12.0 0.2 0.21 10.9 0.1 1.5 1 1 0 1 1 1 0 Peptidase C26 DUF4013 PF13197.1 gi|257387482|ref|YP_003177255.1| - 1.5e-30 105.7 21.9 1.8e-30 105.4 15.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF4013) CTV_P6 PF06706.6 gi|257387482|ref|YP_003177255.1| - 0.68 9.4 5.1 0.43 10.1 0.6 2.4 2 0 0 2 2 2 0 Citrus tristeza virus 6-kDa protein Radical_SAM PF04055.16 gi|257387483|ref|YP_003177256.1| - 1e-05 25.7 0.3 1.9e-05 24.8 0.2 1.4 1 1 0 1 1 1 1 Radical SAM superfamily VanZ PF04892.7 gi|257387484|ref|YP_003177257.1| - 3.3e-09 36.7 1.1 4.4e-09 36.3 0.8 1.2 1 0 0 1 1 1 1 VanZ like family ABC_cobalt PF09819.4 gi|257387484|ref|YP_003177257.1| - 0.23 11.4 6.0 0.049 13.5 1.0 2.0 1 1 1 2 2 2 0 ABC-type cobalt transport system, permease component DUF3382 PF11862.3 gi|257387484|ref|YP_003177257.1| - 5.1 7.0 7.5 7.4 6.5 0.5 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF3382) GtrA PF04138.9 gi|257387484|ref|YP_003177257.1| - 5.5 6.9 7.3 32 4.5 5.1 2.3 1 1 0 1 1 1 0 GtrA-like protein UDPG_MGDP_dh_N PF03721.9 gi|257387485|ref|YP_003177258.1| - 4.5e-55 185.8 0.0 7.2e-55 185.2 0.0 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.14 gi|257387485|ref|YP_003177258.1| - 4.4e-35 119.7 0.0 9.7e-35 118.6 0.0 1.6 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.10 gi|257387485|ref|YP_003177258.1| - 3.2e-25 88.3 0.0 8.6e-25 86.9 0.0 1.8 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_Gly3P_dh_N PF01210.18 gi|257387485|ref|YP_003177258.1| - 9.4e-07 28.6 0.0 1.9e-06 27.6 0.0 1.5 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.13 gi|257387485|ref|YP_003177258.1| - 3.4e-05 23.5 0.0 6.4e-05 22.6 0.0 1.5 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.11 gi|257387485|ref|YP_003177258.1| - 6.4e-05 22.4 0.0 0.00011 21.6 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA F420_oxidored PF03807.12 gi|257387485|ref|YP_003177258.1| - 0.00073 19.9 0.2 0.19 12.1 0.0 3.8 4 1 0 4 4 4 1 NADP oxidoreductase coenzyme F420-dependent Pyr_redox PF00070.22 gi|257387485|ref|YP_003177258.1| - 0.0019 18.5 0.3 0.014 15.8 0.1 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.13 gi|257387485|ref|YP_003177258.1| - 0.0052 16.7 0.3 0.084 12.8 0.0 2.9 3 0 0 3 3 3 1 TrkA-N domain Methyltransf_26 PF13659.1 gi|257387485|ref|YP_003177258.1| - 0.0067 16.4 0.8 0.041 13.9 0.1 2.2 2 0 0 2 2 2 1 Methyltransferase domain DAO PF01266.19 gi|257387485|ref|YP_003177258.1| - 0.019 13.9 0.2 0.052 12.4 0.1 1.8 2 0 0 2 2 2 0 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|257387485|ref|YP_003177258.1| - 0.022 13.8 0.1 0.036 13.1 0.1 1.3 1 0 0 1 1 1 0 FAD binding domain NAD_binding_8 PF13450.1 gi|257387485|ref|YP_003177258.1| - 0.033 14.1 0.1 0.087 12.8 0.0 1.8 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain NAD_binding_2 PF03446.10 gi|257387485|ref|YP_003177258.1| - 0.035 13.9 0.1 0.28 11.0 0.0 2.4 2 1 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase AlaDh_PNT_C PF01262.16 gi|257387485|ref|YP_003177258.1| - 0.044 13.3 0.0 0.084 12.4 0.0 1.5 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain XdhC_C PF13478.1 gi|257387485|ref|YP_003177258.1| - 0.076 13.3 0.3 0.38 11.0 0.0 2.1 2 0 0 2 2 2 0 XdhC Rossmann domain NTP_transferase PF00483.18 gi|257387486|ref|YP_003177259.1| - 1.2e-43 149.1 0.0 1.5e-43 148.9 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|257387486|ref|YP_003177259.1| - 7.6e-15 55.3 0.0 8.8e-15 55.1 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|257387486|ref|YP_003177259.1| - 2.4e-06 27.2 0.0 2.5e-05 23.9 0.0 2.1 1 1 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Epimerase PF01370.16 gi|257387487|ref|YP_003177260.1| - 2e-66 223.8 0.1 2.5e-66 223.5 0.1 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|257387487|ref|YP_003177260.1| - 4.4e-29 101.0 0.0 5.7e-29 100.6 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|257387487|ref|YP_003177260.1| - 2.4e-20 72.5 0.1 3.4e-20 72.1 0.1 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.10 gi|257387487|ref|YP_003177260.1| - 3.6e-17 62.2 0.0 2.2e-16 59.6 0.0 1.8 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|257387487|ref|YP_003177260.1| - 1.2e-14 53.8 0.1 4e-14 52.1 0.0 1.8 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.1 gi|257387487|ref|YP_003177260.1| - 1.7e-14 54.2 0.6 1e-13 51.6 0.4 2.0 1 1 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|257387487|ref|YP_003177260.1| - 1.1e-10 41.7 0.6 2.6e-10 40.4 0.0 1.8 2 0 0 2 2 2 1 short chain dehydrogenase NmrA PF05368.8 gi|257387487|ref|YP_003177260.1| - 8.1e-09 35.0 0.0 1.1e-08 34.5 0.0 1.3 1 0 0 1 1 1 1 NmrA-like family KR PF08659.5 gi|257387487|ref|YP_003177260.1| - 4.8e-07 29.6 0.0 2.2e-06 27.4 0.0 2.0 1 1 0 1 1 1 1 KR domain Epimerase_Csub PF13950.1 gi|257387487|ref|YP_003177260.1| - 0.0083 16.0 0.1 0.018 15.0 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose 4-epimerase C-term subunit 3HCDH_N PF02737.13 gi|257387487|ref|YP_003177260.1| - 0.014 15.0 0.3 0.042 13.4 0.1 2.0 2 1 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain MamL-1 PF09596.5 gi|257387487|ref|YP_003177260.1| - 0.053 13.3 0.1 0.12 12.1 0.0 1.6 1 0 0 1 1 1 0 MamL-1 domain TGT PF01702.13 gi|257387488|ref|YP_003177261.1| - 1.3e-16 60.6 0.0 2.3e-16 59.7 0.0 1.4 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase TGT_C2 PF14810.1 gi|257387488|ref|YP_003177261.1| - 1.1e-15 57.1 0.7 2.5e-15 56.0 0.1 2.0 2 0 0 2 2 2 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.15 gi|257387488|ref|YP_003177261.1| - 2.9e-12 46.1 0.7 1.1e-10 41.0 0.3 2.4 2 0 0 2 2 2 1 PUA domain MbtH PF03621.8 gi|257387488|ref|YP_003177261.1| - 0.077 12.3 0.1 0.27 10.6 0.0 1.8 2 0 0 2 2 2 0 MbtH-like protein TGT PF01702.13 gi|257387489|ref|YP_003177262.1| - 2.7e-45 154.5 0.0 3.5e-45 154.1 0.0 1.1 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase Glycos_transf_1 PF00534.15 gi|257387490|ref|YP_003177263.1| - 6.3e-22 77.8 0.0 3.4e-21 75.4 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|257387490|ref|YP_003177263.1| - 1e-16 61.3 0.1 4.6e-16 59.1 0.0 2.0 1 1 1 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|257387490|ref|YP_003177263.1| - 8.9e-07 29.1 3.5 4.6e-06 26.8 1.0 2.4 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|257387490|ref|YP_003177263.1| - 1.1e-06 28.4 0.1 2.3e-06 27.4 0.1 1.6 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|257387490|ref|YP_003177263.1| - 0.0075 16.5 0.1 0.019 15.2 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Sulfatase PF00884.18 gi|257387491|ref|YP_003177264.1| - 5.4e-41 140.7 0.1 6.7e-41 140.4 0.1 1.1 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|257387491|ref|YP_003177264.1| - 7e-07 28.8 0.3 0.0018 17.6 0.0 2.5 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF229 PF02995.12 gi|257387491|ref|YP_003177264.1| - 0.0061 15.0 0.0 0.01 14.2 0.0 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF229) Metalloenzyme PF01676.13 gi|257387491|ref|YP_003177264.1| - 0.0063 15.9 0.0 0.017 14.5 0.0 1.7 1 0 0 1 1 1 1 Metalloenzyme superfamily Sulfatase_C PF14707.1 gi|257387491|ref|YP_003177264.1| - 0.044 14.0 0.6 0.14 12.4 0.0 2.0 1 1 1 2 2 2 0 C-terminal region of aryl-sulfatase PAS_9 PF13426.1 gi|257387492|ref|YP_003177265.1| - 7.2e-17 61.6 0.0 9.6e-17 61.2 0.0 1.2 1 0 0 1 1 1 1 PAS domain PAS PF00989.19 gi|257387492|ref|YP_003177265.1| - 5.9e-08 32.4 0.0 8.2e-08 32.0 0.0 1.3 1 0 0 1 1 1 1 PAS fold PAS_3 PF08447.6 gi|257387492|ref|YP_003177265.1| - 0.0003 20.8 0.0 0.00084 19.3 0.0 1.7 1 1 0 1 1 1 1 PAS fold PAS_4 PF08448.5 gi|257387492|ref|YP_003177265.1| - 0.0011 19.0 0.2 0.0017 18.3 0.1 1.3 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.1 gi|257387492|ref|YP_003177265.1| - 0.0067 16.2 0.0 0.013 15.3 0.0 1.5 1 0 0 1 1 1 1 PAS domain TOBE PF03459.12 gi|257387493|ref|YP_003177266.1| - 0.00065 19.7 1.1 0.0037 17.3 0.8 2.0 1 1 0 1 1 1 1 TOBE domain FAD_binding_2 PF00890.19 gi|257387495|ref|YP_003177268.1| - 1.9e-91 306.9 9.3 2.5e-91 306.6 6.4 1.1 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.15 gi|257387495|ref|YP_003177268.1| - 1.7e-22 79.6 0.0 5.9e-22 77.9 0.0 1.8 2 0 0 2 2 2 1 Fumarate reductase flavoprotein C-term DAO PF01266.19 gi|257387495|ref|YP_003177268.1| - 5.3e-10 38.7 5.8 3e-09 36.2 4.1 2.3 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|257387495|ref|YP_003177268.1| - 5e-06 26.5 6.7 0.0015 18.4 4.6 2.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|257387495|ref|YP_003177268.1| - 2.2e-05 23.0 2.2 0.077 11.4 0.3 3.1 3 0 0 3 3 3 2 HI0933-like protein FAD_binding_3 PF01494.14 gi|257387495|ref|YP_003177268.1| - 6.4e-05 22.1 0.6 0.0001 21.4 0.4 1.3 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.1 gi|257387495|ref|YP_003177268.1| - 0.0014 18.6 1.5 0.0043 17.0 0.4 2.4 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.1 gi|257387495|ref|YP_003177268.1| - 0.0015 18.5 0.8 0.015 15.3 0.6 2.3 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GARS_C PF02843.11 gi|257387495|ref|YP_003177268.1| - 0.037 14.1 0.7 3.5 7.8 0.0 3.0 3 0 0 3 3 3 0 Phosphoribosylglycinamide synthetase, C domain Shikimate_DH PF01488.15 gi|257387495|ref|YP_003177268.1| - 0.049 13.7 0.0 0.12 12.5 0.0 1.6 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Thi4 PF01946.12 gi|257387495|ref|YP_003177268.1| - 0.052 12.6 3.4 0.57 9.2 0.2 2.4 2 0 0 2 2 2 0 Thi4 family ApbA PF02558.11 gi|257387495|ref|YP_003177268.1| - 0.25 10.7 1.1 0.46 9.9 0.7 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA GIDA PF01134.17 gi|257387495|ref|YP_003177268.1| - 0.68 8.7 7.2 0.031 13.1 0.4 2.0 3 0 0 3 3 3 0 Glucose inhibited division protein A DUF606 PF04657.8 gi|257387496|ref|YP_003177269.1| - 0.032 14.3 1.2 0.035 14.1 0.8 1.1 1 0 0 1 1 1 0 Protein of unknown function, DUF606 NfeD PF01957.13 gi|257387496|ref|YP_003177269.1| - 0.22 11.6 4.1 0.24 11.5 2.9 1.1 1 0 0 1 1 1 0 NfeD-like C-terminal, partner-binding DUF3165 PF11364.3 gi|257387496|ref|YP_003177269.1| - 0.32 11.1 2.7 0.41 10.8 1.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3165) SUR7 PF06687.7 gi|257387496|ref|YP_003177269.1| - 2.5 7.6 5.2 3.1 7.3 3.6 1.1 1 0 0 1 1 1 0 SUR7/PalI family Herpes_US9 PF06072.6 gi|257387496|ref|YP_003177269.1| - 4.9 7.0 7.4 0.69 9.7 0.9 2.1 2 0 0 2 2 2 0 Alphaherpesvirus tegument protein US9 MFS_1 PF07690.11 gi|257387497|ref|YP_003177270.1| - 0.0018 17.0 0.1 0.0018 17.0 0.1 1.0 1 0 0 1 1 1 1 Major Facilitator Superfamily NUDIX PF00293.23 gi|257387499|ref|YP_003177272.1| - 1.3e-15 57.2 0.4 1.6e-15 56.9 0.3 1.1 1 0 0 1 1 1 1 NUDIX domain NPP1 PF05630.6 gi|257387500|ref|YP_003177273.1| - 0.055 13.2 0.5 0.11 12.2 0.2 1.5 2 0 0 2 2 2 0 Necrosis inducing protein (NPP1) PQQ_2 PF13360.1 gi|257387501|ref|YP_003177274.1| - 9.3e-51 172.5 17.7 4.8e-20 72.0 0.1 3.7 1 1 3 4 4 4 4 PQQ-like domain PQQ_3 PF13570.1 gi|257387501|ref|YP_003177274.1| - 1.7e-45 152.0 34.6 2.1e-10 40.5 0.5 8.3 8 0 0 8 8 8 8 PQQ-like domain PQQ PF01011.16 gi|257387501|ref|YP_003177274.1| - 1.8e-28 96.6 12.6 9.1e-10 37.5 0.1 7.3 7 2 0 7 7 7 4 PQQ enzyme repeat PGDYG PF14083.1 gi|257387501|ref|YP_003177274.1| - 0.0072 16.6 0.1 0.016 15.5 0.1 1.6 1 0 0 1 1 1 1 PGDYG protein Methyltrn_RNA_2 PF04013.7 gi|257387502|ref|YP_003177275.1| - 2.2e-60 203.6 0.0 2.5e-60 203.4 0.0 1.0 1 0 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase Glyoxalase PF00903.20 gi|257387503|ref|YP_003177276.1| - 6.6e-30 103.7 0.5 1.8e-15 57.0 0.0 2.4 2 0 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.2 gi|257387503|ref|YP_003177276.1| - 1.3e-14 54.6 0.6 3e-06 27.7 0.0 2.2 2 0 0 2 2 2 2 Glyoxalase-like domain Glyoxalase_4 PF13669.1 gi|257387503|ref|YP_003177276.1| - 1.4e-06 28.2 0.1 0.037 14.0 0.0 3.0 1 1 2 3 3 3 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.1 gi|257387503|ref|YP_003177276.1| - 0.34 10.8 5.3 11 5.8 0.1 3.1 2 1 0 3 3 3 0 Glyoxalase-like domain Abhydrolase_2 PF02230.11 gi|257387504|ref|YP_003177277.1| - 2e-20 73.2 0.0 6.8e-20 71.4 0.0 1.7 1 1 0 1 1 1 1 Phospholipase/Carboxylesterase Abhydrolase_5 PF12695.2 gi|257387504|ref|YP_003177277.1| - 1.6e-13 50.6 0.7 2e-13 50.3 0.5 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|257387504|ref|YP_003177277.1| - 4.1e-13 49.7 6.7 9.8e-09 35.4 2.5 2.1 1 1 1 2 2 2 2 Alpha/beta hydrolase family Esterase_phd PF10503.4 gi|257387504|ref|YP_003177277.1| - 4.3e-09 35.9 2.6 9.9e-08 31.4 0.7 2.0 1 1 1 2 2 2 2 Esterase PHB depolymerase Abhydrolase_1 PF00561.15 gi|257387504|ref|YP_003177277.1| - 8.4e-08 32.0 0.0 6.5e-06 25.8 0.0 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold DLH PF01738.13 gi|257387504|ref|YP_003177277.1| - 9e-08 31.6 0.0 1.1e-07 31.4 0.0 1.2 1 0 0 1 1 1 1 Dienelactone hydrolase family Esterase PF00756.15 gi|257387504|ref|YP_003177277.1| - 6.3e-07 29.0 0.1 1e-06 28.4 0.0 1.6 1 1 0 1 1 1 1 Putative esterase Abhydrolase_3 PF07859.8 gi|257387504|ref|YP_003177277.1| - 1.8e-05 24.4 0.6 0.022 14.3 0.0 2.2 1 1 1 2 2 2 2 alpha/beta hydrolase fold Peptidase_S9 PF00326.16 gi|257387504|ref|YP_003177277.1| - 2.2e-05 23.8 0.2 0.087 12.0 0.0 2.4 3 0 0 3 3 3 2 Prolyl oligopeptidase family FSH1 PF03959.8 gi|257387504|ref|YP_003177277.1| - 0.00014 21.3 0.0 0.00031 20.2 0.0 1.6 1 1 0 1 1 1 1 Serine hydrolase (FSH1) Chlorophyllase2 PF12740.2 gi|257387504|ref|YP_003177277.1| - 0.0033 16.3 0.0 0.0045 15.8 0.0 1.1 1 0 0 1 1 1 1 Chlorophyllase enzyme Chlorophyllase PF07224.6 gi|257387504|ref|YP_003177277.1| - 0.018 13.8 0.0 0.022 13.5 0.0 1.1 1 0 0 1 1 1 0 Chlorophyllase Abhydrolase_4 PF08386.5 gi|257387504|ref|YP_003177277.1| - 0.022 14.6 0.0 0.043 13.6 0.0 1.4 1 0 0 1 1 1 0 TAP-like protein TPP_enzyme_N PF02776.13 gi|257387504|ref|YP_003177277.1| - 0.057 12.9 0.1 0.1 12.0 0.1 1.4 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PE-PPE PF08237.6 gi|257387504|ref|YP_003177277.1| - 0.14 11.5 0.0 0.16 11.3 0.0 1.3 1 1 0 1 1 1 0 PE-PPE domain Bac_transf PF02397.11 gi|257387505|ref|YP_003177278.1| - 2.4e-62 209.3 0.0 3.9e-62 208.7 0.0 1.3 1 0 0 1 1 1 1 Bacterial sugar transferase Sulfatase PF00884.18 gi|257387506|ref|YP_003177279.1| - 1.9e-35 122.5 0.0 2.6e-35 122.1 0.0 1.2 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|257387506|ref|YP_003177279.1| - 1.7e-10 40.7 0.4 7.1e-06 25.5 0.0 2.2 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase Metalloenzyme PF01676.13 gi|257387506|ref|YP_003177279.1| - 2.9e-06 26.8 0.0 5.8e-06 25.8 0.0 1.5 1 0 0 1 1 1 1 Metalloenzyme superfamily DUF229 PF02995.12 gi|257387506|ref|YP_003177279.1| - 0.00024 19.6 0.0 0.00038 19.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF229) ABC_tran PF00005.22 gi|257387507|ref|YP_003177280.1| - 3e-32 111.7 0.0 5.4e-32 110.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.14 gi|257387507|ref|YP_003177280.1| - 1.2e-07 31.2 2.8 5e-07 29.1 0.2 1.9 1 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_17 PF13207.1 gi|257387507|ref|YP_003177280.1| - 5.9e-07 30.3 0.3 2.8e-06 28.1 0.1 2.3 2 0 0 2 2 2 1 AAA domain ABC_membrane PF00664.18 gi|257387507|ref|YP_003177280.1| - 3.2e-06 26.7 7.3 4.7e-06 26.2 5.1 1.2 1 0 0 1 1 1 1 ABC transporter transmembrane region DUF258 PF03193.11 gi|257387507|ref|YP_003177280.1| - 1.2e-05 24.6 0.0 2.3e-05 23.6 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_21 PF13304.1 gi|257387507|ref|YP_003177280.1| - 0.00014 21.9 0.7 0.094 12.6 0.0 2.7 2 1 0 3 3 3 2 AAA domain AAA_29 PF13555.1 gi|257387507|ref|YP_003177280.1| - 0.0039 16.6 0.0 0.0079 15.7 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|257387507|ref|YP_003177280.1| - 0.0042 16.5 0.0 0.028 13.8 0.0 2.1 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|257387507|ref|YP_003177280.1| - 0.0053 16.8 0.5 0.052 13.7 0.3 2.4 1 1 0 1 1 1 1 AAA domain ArgK PF03308.11 gi|257387507|ref|YP_003177280.1| - 0.0066 15.2 0.0 0.013 14.2 0.0 1.4 1 0 0 1 1 1 1 ArgK protein AAA_24 PF13479.1 gi|257387507|ref|YP_003177280.1| - 0.011 15.3 0.1 0.021 14.4 0.1 1.5 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|257387507|ref|YP_003177280.1| - 0.012 15.8 0.0 0.059 13.6 0.0 2.1 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.17 gi|257387507|ref|YP_003177280.1| - 0.014 15.5 0.0 0.057 13.6 0.0 2.1 2 0 0 2 2 1 0 RNA helicase NTPase_1 PF03266.10 gi|257387507|ref|YP_003177280.1| - 0.021 14.5 0.8 1.5 8.5 0.1 2.7 2 1 0 2 2 2 0 NTPase AAA_30 PF13604.1 gi|257387507|ref|YP_003177280.1| - 0.027 14.0 1.1 0.43 10.1 0.0 2.2 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.7 gi|257387507|ref|YP_003177280.1| - 0.028 13.5 0.1 0.1 11.6 0.1 2.0 1 1 0 1 1 1 0 Zeta toxin MobB PF03205.9 gi|257387507|ref|YP_003177280.1| - 0.058 13.1 0.0 0.19 11.3 0.0 1.8 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_10 PF12846.2 gi|257387507|ref|YP_003177280.1| - 0.058 12.8 0.8 0.51 9.7 0.0 2.5 3 0 0 3 3 3 0 AAA-like domain Virul_Fac PF10139.4 gi|257387507|ref|YP_003177280.1| - 0.06 11.2 0.0 0.096 10.6 0.0 1.2 1 0 0 1 1 1 0 Putative bacterial virulence factor MMR_HSR1 PF01926.18 gi|257387507|ref|YP_003177280.1| - 0.065 13.1 0.2 0.2 11.6 0.1 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase ABC_ATPase PF09818.4 gi|257387507|ref|YP_003177280.1| - 0.076 11.5 0.0 0.43 9.1 0.0 2.0 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_16 PF13191.1 gi|257387507|ref|YP_003177280.1| - 0.092 12.7 0.5 0.33 10.9 0.4 2.1 1 1 0 1 1 1 0 AAA ATPase domain Glycos_transf_2 PF00535.21 gi|257387508|ref|YP_003177281.1| - 3.3e-25 88.7 0.0 4.6e-25 88.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|257387508|ref|YP_003177281.1| - 1.4e-16 60.9 0.0 1.8e-16 60.6 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|257387508|ref|YP_003177281.1| - 4.1e-06 26.0 0.0 1.5e-05 24.2 0.0 1.8 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|257387508|ref|YP_003177281.1| - 0.0019 17.9 0.1 0.0049 16.5 0.1 1.7 1 1 0 1 1 1 1 Glycosyl transferase family group 2 NeuB PF03102.9 gi|257387509|ref|YP_003177282.1| - 1.1e-87 293.1 0.0 1.4e-87 292.8 0.0 1.1 1 0 0 1 1 1 1 NeuB family SAF PF08666.7 gi|257387509|ref|YP_003177282.1| - 2.5e-10 40.5 0.1 4.8e-10 39.6 0.1 1.5 1 0 0 1 1 1 1 SAF domain SAF_2 PF13144.1 gi|257387509|ref|YP_003177282.1| - 0.051 13.0 0.0 0.082 12.3 0.0 1.3 1 0 0 1 1 1 0 SAF-like PIG-L PF02585.12 gi|257387510|ref|YP_003177283.1| - 6.2e-25 88.1 3.0 8.8e-25 87.6 2.1 1.2 1 0 0 1 1 1 1 GlcNAc-PI de-N-acetylase Hexapep PF00132.19 gi|257387511|ref|YP_003177284.1| - 2.5e-18 64.6 23.8 1.9e-09 36.6 3.8 4.0 3 1 3 6 6 6 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|257387511|ref|YP_003177284.1| - 6.8e-07 28.7 11.6 1.7e-05 24.2 2.1 3.5 3 2 1 4 4 4 3 Hexapeptide repeat of succinyl-transferase Methyltransf_31 PF13847.1 gi|257387512|ref|YP_003177285.1| - 8.2e-21 74.1 0.0 1.1e-20 73.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|257387512|ref|YP_003177285.1| - 2.1e-19 69.8 0.0 3.7e-19 68.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|257387512|ref|YP_003177285.1| - 7.3e-19 68.0 0.0 1e-18 67.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|257387512|ref|YP_003177285.1| - 9.9e-16 57.9 0.0 2.5e-15 56.6 0.0 1.7 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|257387512|ref|YP_003177285.1| - 3.2e-15 56.6 0.1 5.9e-15 55.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|257387512|ref|YP_003177285.1| - 3.1e-12 46.8 0.0 5.1e-12 46.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|257387512|ref|YP_003177285.1| - 1.3e-11 44.1 0.0 1.5e-11 43.9 0.0 1.0 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_26 PF13659.1 gi|257387512|ref|YP_003177285.1| - 1.7e-10 40.9 0.0 2.8e-10 40.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain TehB PF03848.9 gi|257387512|ref|YP_003177285.1| - 2.9e-10 39.6 0.0 3.9e-10 39.2 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB MetW PF07021.7 gi|257387512|ref|YP_003177285.1| - 1.9e-07 30.6 0.0 3e-07 30.0 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Ubie_methyltran PF01209.13 gi|257387512|ref|YP_003177285.1| - 1.9e-06 27.1 0.0 2.7e-06 26.6 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.9 gi|257387512|ref|YP_003177285.1| - 6.3e-06 25.6 0.0 9.8e-06 25.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain TPMT PF05724.6 gi|257387512|ref|YP_003177285.1| - 7.2e-05 22.3 0.0 0.00011 21.6 0.0 1.3 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) NodS PF05401.6 gi|257387512|ref|YP_003177285.1| - 8.4e-05 22.0 0.0 0.00012 21.5 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_29 PF03141.11 gi|257387512|ref|YP_003177285.1| - 0.0006 18.2 0.0 0.00077 17.9 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase PrmA PF06325.8 gi|257387512|ref|YP_003177285.1| - 0.0013 17.8 0.0 0.0019 17.3 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) AdoMet_MTase PF07757.8 gi|257387512|ref|YP_003177285.1| - 0.0091 16.1 0.1 0.073 13.1 0.0 2.4 3 1 0 3 3 2 1 Predicted AdoMet-dependent methyltransferase Pox_MCEL PF03291.11 gi|257387512|ref|YP_003177285.1| - 0.014 14.2 0.0 0.022 13.6 0.0 1.3 1 0 0 1 1 1 0 mRNA capping enzyme Methyltransf_32 PF13679.1 gi|257387512|ref|YP_003177285.1| - 0.016 14.8 0.0 0.025 14.2 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain FmrO PF07091.6 gi|257387512|ref|YP_003177285.1| - 0.027 13.4 0.0 0.035 13.0 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) UPF0020 PF01170.13 gi|257387512|ref|YP_003177285.1| - 0.036 13.6 0.0 0.057 12.9 0.0 1.2 1 0 0 1 1 1 0 Putative RNA methylase family UPF0020 Methyltransf_9 PF08003.6 gi|257387512|ref|YP_003177285.1| - 0.036 12.7 0.0 0.08 11.6 0.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1698) DUF938 PF06080.7 gi|257387512|ref|YP_003177285.1| - 0.084 12.4 0.0 0.12 11.9 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF938) Methyltransf_4 PF02390.12 gi|257387512|ref|YP_003177285.1| - 0.13 11.3 0.0 0.2 10.6 0.0 1.3 1 0 0 1 1 1 0 Putative methyltransferase Epimerase_2 PF02350.14 gi|257387514|ref|YP_003177287.1| - 8.5e-71 238.5 0.0 9.7e-71 238.3 0.0 1.0 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase DUF3602 PF12223.3 gi|257387514|ref|YP_003177287.1| - 0.014 15.7 0.0 0.038 14.3 0.0 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF3602) ATPgrasp_Ter PF15632.1 gi|257387515|ref|YP_003177288.1| - 1.6e-37 128.9 0.0 8.4e-36 123.3 0.0 2.1 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_4 PF13535.1 gi|257387515|ref|YP_003177288.1| - 3.8e-21 75.6 0.0 7.2e-21 74.7 0.0 1.5 1 1 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|257387515|ref|YP_003177288.1| - 2.5e-19 69.7 0.0 3.3e-19 69.3 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|257387515|ref|YP_003177288.1| - 0.00017 20.9 0.0 0.15 11.3 0.0 2.6 2 1 1 3 3 3 2 Carbamoyl-phosphate synthase L chain, ATP binding domain GARS_N PF02844.10 gi|257387515|ref|YP_003177288.1| - 0.002 18.5 0.1 0.54 10.7 0.0 2.5 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, N domain Dala_Dala_lig_C PF07478.8 gi|257387515|ref|YP_003177288.1| - 0.0063 15.9 0.0 0.01 15.2 0.0 1.3 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus HAD_2 PF13419.1 gi|257387516|ref|YP_003177289.1| - 1.1e-30 107.1 0.0 1.3e-30 106.8 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|257387516|ref|YP_003177289.1| - 9.6e-14 52.3 0.0 7.9e-13 49.3 0.0 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|257387516|ref|YP_003177289.1| - 2.4e-09 36.7 0.0 4.9e-09 35.7 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.2 gi|257387516|ref|YP_003177289.1| - 8.3e-07 29.3 0.0 1.1e-06 29.0 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Acid_PPase PF12689.2 gi|257387516|ref|YP_003177289.1| - 0.0016 18.1 0.1 0.043 13.4 0.0 2.1 1 1 0 1 1 1 1 Acid Phosphatase Hydrolase_6 PF13344.1 gi|257387516|ref|YP_003177289.1| - 0.0026 17.5 0.0 0.015 15.1 0.0 2.1 3 0 0 3 3 3 1 Haloacid dehalogenase-like hydrolase PqqD PF05402.7 gi|257387516|ref|YP_003177289.1| - 0.13 12.2 0.1 0.87 9.6 0.0 2.2 2 0 0 2 2 2 0 Coenzyme PQQ synthesis protein D (PqqD) adh_short_C2 PF13561.1 gi|257387517|ref|YP_003177290.1| - 2.4e-24 86.4 0.0 5.2e-24 85.3 0.0 1.5 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|257387517|ref|YP_003177290.1| - 8.9e-17 61.4 0.1 1.4e-16 60.8 0.1 1.3 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|257387517|ref|YP_003177290.1| - 6e-08 32.5 0.2 1e-07 31.8 0.1 1.3 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|257387517|ref|YP_003177290.1| - 2e-07 30.7 0.0 3.1e-07 30.0 0.0 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|257387517|ref|YP_003177290.1| - 0.00013 20.9 0.1 0.0024 16.8 0.0 2.2 2 0 0 2 2 2 1 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|257387517|ref|YP_003177290.1| - 0.0008 18.1 0.1 0.0012 17.6 0.1 1.2 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.1 gi|257387517|ref|YP_003177290.1| - 0.0023 17.9 0.5 0.0076 16.2 0.3 1.9 1 1 0 1 1 1 1 NADH(P)-binding 3HCDH_N PF02737.13 gi|257387517|ref|YP_003177290.1| - 0.0025 17.5 0.2 0.0036 16.9 0.2 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Shikimate_DH PF01488.15 gi|257387517|ref|YP_003177290.1| - 0.011 15.8 0.0 0.03 14.4 0.0 1.7 2 0 0 2 2 2 0 Shikimate / quinate 5-dehydrogenase NAD_binding_4 PF07993.7 gi|257387517|ref|YP_003177290.1| - 0.019 13.9 0.3 2.1 7.1 0.0 2.1 1 1 0 2 2 2 0 Male sterility protein UDPG_MGDP_dh_C PF03720.10 gi|257387517|ref|YP_003177290.1| - 0.057 13.5 0.0 0.1 12.7 0.0 1.5 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain F420_oxidored PF03807.12 gi|257387517|ref|YP_003177290.1| - 0.083 13.3 0.3 0.14 12.5 0.2 1.4 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent CTP_transf_3 PF02348.14 gi|257387518|ref|YP_003177291.1| - 2.9e-29 102.2 0.0 3.6e-29 101.9 0.0 1.0 1 0 0 1 1 1 1 Cytidylyltransferase Tir_receptor_M PF03549.9 gi|257387518|ref|YP_003177291.1| - 0.01 15.9 0.0 0.024 14.7 0.0 1.6 1 0 0 1 1 1 0 Translocated intimin receptor (Tir) intimin-binding domain NTP_transf_3 PF12804.2 gi|257387518|ref|YP_003177291.1| - 0.014 15.5 0.0 0.02 14.9 0.0 1.4 1 1 0 1 1 1 0 MobA-like NTP transferase domain GFO_IDH_MocA PF01408.17 gi|257387519|ref|YP_003177292.1| - 3.8e-14 53.2 0.0 4.7e-13 49.6 0.0 2.4 2 1 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|257387519|ref|YP_003177292.1| - 1.7e-05 24.5 0.0 2.5e-05 24.0 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain Cuticle_1 PF08140.6 gi|257387519|ref|YP_003177292.1| - 0.031 14.1 0.3 26 4.7 0.0 3.1 3 0 0 3 3 3 0 Crustacean cuticle protein repeat DegT_DnrJ_EryC1 PF01041.12 gi|257387520|ref|YP_003177293.1| - 5.1e-116 387.6 0.0 5.9e-116 387.4 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.16 gi|257387520|ref|YP_003177293.1| - 2e-09 36.8 0.0 3.1e-09 36.2 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|257387520|ref|YP_003177293.1| - 2.1e-07 30.3 0.0 3.6e-07 29.5 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|257387520|ref|YP_003177293.1| - 1.2e-05 23.8 0.0 1.7e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme SelA PF03841.8 gi|257387520|ref|YP_003177293.1| - 0.029 13.1 0.0 3.2 6.4 0.0 2.5 3 0 0 3 3 3 0 L-seryl-tRNA selenium transferase OKR_DC_1 PF01276.15 gi|257387520|ref|YP_003177293.1| - 0.064 11.7 0.0 0.092 11.2 0.0 1.1 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain DUF3782 PF12644.2 gi|257387520|ref|YP_003177293.1| - 0.18 11.6 0.2 0.59 9.9 0.1 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF3782) Polysacc_synt_2 PF02719.10 gi|257387521|ref|YP_003177294.1| - 2.9e-101 338.2 0.0 3.3e-101 338.0 0.0 1.0 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein Epimerase PF01370.16 gi|257387521|ref|YP_003177294.1| - 2.2e-23 82.9 0.0 2.3e-21 76.3 0.0 2.9 2 1 0 2 2 2 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|257387521|ref|YP_003177294.1| - 7.2e-23 80.6 0.1 9.3e-22 77.0 0.0 2.0 1 1 1 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|257387521|ref|YP_003177294.1| - 2.6e-12 46.2 0.0 9.7e-11 41.0 0.0 2.3 1 1 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.7 gi|257387521|ref|YP_003177294.1| - 2.4e-09 36.4 0.4 1.3e-08 34.0 0.3 2.2 1 1 0 1 1 1 1 Male sterility protein adh_short PF00106.20 gi|257387521|ref|YP_003177294.1| - 4.2e-08 33.2 0.0 7.9e-08 32.3 0.0 1.4 1 0 0 1 1 1 1 short chain dehydrogenase NAD_binding_10 PF13460.1 gi|257387521|ref|YP_003177294.1| - 4.3e-08 33.3 0.1 6.6e-08 32.7 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding NmrA PF05368.8 gi|257387521|ref|YP_003177294.1| - 1.5e-05 24.3 0.0 2.4e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 NmrA-like family TrkA_N PF02254.13 gi|257387521|ref|YP_003177294.1| - 0.00052 19.9 0.6 0.0041 17.0 0.2 2.2 1 1 1 2 2 2 1 TrkA-N domain F420_oxidored PF03807.12 gi|257387521|ref|YP_003177294.1| - 0.0024 18.2 0.0 0.008 16.5 0.0 1.9 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent KR PF08659.5 gi|257387521|ref|YP_003177294.1| - 0.0061 16.2 0.0 0.014 15.0 0.0 1.6 1 0 0 1 1 1 1 KR domain Saccharop_dh PF03435.13 gi|257387521|ref|YP_003177294.1| - 0.012 14.6 0.1 0.034 13.1 0.0 1.7 2 0 0 2 2 2 0 Saccharopine dehydrogenase DUF1993 PF09351.5 gi|257387521|ref|YP_003177294.1| - 0.021 14.7 0.0 0.31 10.9 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1993) Methyltransf_25 PF13649.1 gi|257387521|ref|YP_003177294.1| - 0.035 14.4 0.0 0.068 13.5 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Pro-rich_19 PF15455.1 gi|257387521|ref|YP_003177294.1| - 0.076 12.0 0.0 0.14 11.1 0.0 1.3 1 0 0 1 1 1 0 Proline-rich 19 NAD_binding_3 PF03447.11 gi|257387521|ref|YP_003177294.1| - 0.11 12.9 0.0 0.26 11.6 0.0 1.7 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain DAO PF01266.19 gi|257387522|ref|YP_003177295.1| - 0.016 14.1 0.0 0.02 13.7 0.0 1.1 1 0 0 1 1 1 0 FAD dependent oxidoreductase Sulfatase PF00884.18 gi|257387522|ref|YP_003177295.1| - 0.046 12.9 0.0 0.054 12.6 0.0 1.2 1 0 0 1 1 1 0 Sulfatase O-antigen_lig PF13425.1 gi|257387523|ref|YP_003177296.1| - 1.4e-14 54.2 9.1 1.4e-14 54.2 6.3 4.0 2 1 1 3 3 3 1 O-antigen ligase like membrane protein Wzy_C PF04932.10 gi|257387523|ref|YP_003177296.1| - 9.8e-09 35.1 11.8 9.8e-09 35.1 8.2 4.3 1 1 1 2 2 2 1 O-Antigen ligase CST-I PF06002.7 gi|257387524|ref|YP_003177297.1| - 0.0099 15.1 0.0 0.011 14.9 0.0 1.2 1 0 0 1 1 1 1 Alpha-2,3-sialyltransferase (CST-I) MAF_flag10 PF01973.13 gi|257387524|ref|YP_003177297.1| - 0.041 13.3 0.0 0.064 12.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function DUF115 DDE_Tnp_IS1595 PF12762.2 gi|257387525|ref|YP_003177298.1| - 1.1e-23 83.7 0.0 1.5e-23 83.2 0.0 1.2 1 0 0 1 1 1 1 ISXO2-like transposase domain Zn_Tnp_IS1595 PF12760.2 gi|257387525|ref|YP_003177298.1| - 4e-10 39.3 0.9 8.8e-10 38.2 0.6 1.6 1 0 0 1 1 1 1 Transposase zinc-ribbon domain DUF2089 PF09862.4 gi|257387525|ref|YP_003177298.1| - 4.5e-06 26.4 0.0 6.5e-06 25.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2089) Zn_Tnp_IS1 PF03811.8 gi|257387525|ref|YP_003177298.1| - 0.00014 21.2 3.9 0.00045 19.6 2.7 1.8 1 0 0 1 1 1 1 InsA N-terminal domain HTH_23 PF13384.1 gi|257387525|ref|YP_003177298.1| - 0.0023 17.5 0.0 0.0077 15.8 0.0 1.9 1 0 0 1 1 1 1 Homeodomain-like domain ADK_lid PF05191.9 gi|257387525|ref|YP_003177298.1| - 0.014 15.0 0.1 0.014 15.0 0.1 2.1 2 0 0 2 2 2 0 Adenylate kinase, active site lid HTH_29 PF13551.1 gi|257387525|ref|YP_003177298.1| - 0.032 14.3 0.0 0.14 12.3 0.0 2.0 2 0 0 2 2 2 0 Winged helix-turn helix HTH_28 PF13518.1 gi|257387525|ref|YP_003177298.1| - 0.035 14.1 0.1 0.22 11.5 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain Prok-RING_1 PF14446.1 gi|257387525|ref|YP_003177298.1| - 0.042 13.5 0.3 1.2 8.8 0.0 2.2 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 zinc-ribbons_6 PF07191.7 gi|257387525|ref|YP_003177298.1| - 0.052 13.3 0.1 0.1 12.3 0.1 1.5 1 0 0 1 1 1 0 zinc-ribbons Zn-ribbon_8 PF09723.5 gi|257387525|ref|YP_003177298.1| - 0.054 13.4 2.1 11 6.1 0.3 2.7 2 0 0 2 2 2 0 Zinc ribbon domain HTH_11 PF08279.7 gi|257387525|ref|YP_003177298.1| - 0.071 12.7 0.0 0.14 11.8 0.0 1.5 1 0 0 1 1 1 0 HTH domain GerE PF00196.14 gi|257387525|ref|YP_003177298.1| - 0.076 12.3 0.0 0.19 11.0 0.0 1.6 2 0 0 2 2 1 0 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.7 gi|257387525|ref|YP_003177298.1| - 0.082 12.3 0.0 0.25 10.8 0.0 1.8 1 0 0 1 1 1 0 Sigma-70, region 4 zf-C4_Topoisom PF01396.14 gi|257387525|ref|YP_003177298.1| - 0.094 12.2 1.0 0.19 11.2 0.7 1.5 1 0 0 1 1 1 0 Topoisomerase DNA binding C4 zinc finger HNH_5 PF14279.1 gi|257387525|ref|YP_003177298.1| - 0.096 12.6 0.1 0.21 11.6 0.0 1.6 1 0 0 1 1 1 0 HNH endonuclease zf-C2HC_2 PF13913.1 gi|257387525|ref|YP_003177298.1| - 0.11 12.1 0.6 0.11 12.1 0.4 2.4 2 0 0 2 2 2 0 zinc-finger of a C2HC-type Auxin_inducible PF02519.9 gi|257387525|ref|YP_003177298.1| - 0.13 12.2 0.0 0.25 11.4 0.0 1.4 1 0 0 1 1 1 0 Auxin responsive protein zf-Dof PF02701.10 gi|257387525|ref|YP_003177298.1| - 0.17 11.8 3.9 0.33 10.9 2.7 1.4 1 0 0 1 1 1 0 Dof domain, zinc finger zf-ISL3 PF14690.1 gi|257387525|ref|YP_003177298.1| - 0.46 10.5 5.1 9.9 6.2 0.1 2.8 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-C2H2_6 PF13912.1 gi|257387525|ref|YP_003177298.1| - 0.72 9.8 4.2 0.44 10.5 0.2 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger Zn_ribbon_recom PF13408.1 gi|257387525|ref|YP_003177298.1| - 2.3 8.5 5.6 5.9 7.2 3.9 1.8 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain STT3 PF02516.9 gi|257387528|ref|YP_003177301.1| - 4.3e-13 49.0 12.4 8e-13 48.1 8.6 1.4 1 0 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit PMT PF02366.13 gi|257387528|ref|YP_003177301.1| - 0.013 14.9 8.7 0.019 14.3 5.2 1.9 2 0 0 2 2 2 0 Dolichyl-phosphate-mannose-protein mannosyltransferase CarboxypepD_reg PF13620.1 gi|257387528|ref|YP_003177301.1| - 0.03 14.3 6.7 0.031 14.3 2.7 2.4 2 0 0 2 2 2 0 Carboxypeptidase regulatory-like domain DUF4330 PF14221.1 gi|257387529|ref|YP_003177302.1| - 8.5e-27 94.0 13.0 1.3e-09 38.1 0.1 5.3 4 1 1 5 5 5 5 Domain of unknown function (DUF4330) MCE PF02470.15 gi|257387529|ref|YP_003177302.1| - 2 8.4 10.6 14 5.7 3.5 3.9 1 1 1 2 2 2 0 mce related protein HTH_20 PF12840.2 gi|257387531|ref|YP_003177304.1| - 0.0025 17.5 0.0 0.0047 16.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|257387531|ref|YP_003177304.1| - 0.018 14.4 0.0 0.042 13.2 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|257387531|ref|YP_003177304.1| - 0.019 14.5 0.0 0.1 12.1 0.0 2.3 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|257387531|ref|YP_003177304.1| - 0.037 13.4 0.0 0.074 12.5 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 SWIM PF04434.12 gi|257387534|ref|YP_003177307.1| - 0.0014 18.0 0.3 0.003 16.9 0.2 1.6 1 0 0 1 1 1 1 SWIM zinc finger ALF PF03752.8 gi|257387534|ref|YP_003177307.1| - 0.0055 16.5 3.6 0.02 14.7 0.3 3.5 3 0 0 3 3 3 1 Short repeats of unknown function Globin PF00042.17 gi|257387534|ref|YP_003177307.1| - 0.0079 16.5 0.2 17 5.8 0.0 3.9 4 0 0 4 4 4 0 Globin TPR_7 PF13176.1 gi|257387534|ref|YP_003177307.1| - 0.012 15.3 2.2 0.7 9.8 0.3 3.7 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_12 PF13424.1 gi|257387534|ref|YP_003177307.1| - 0.025 14.4 0.5 0.15 12.0 0.1 2.5 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_14 PF13428.1 gi|257387534|ref|YP_003177307.1| - 0.1 13.2 0.3 0.1 13.2 0.2 6.0 6 1 0 6 6 6 0 Tetratricopeptide repeat DNA_pol3_theta PF06440.6 gi|257387534|ref|YP_003177307.1| - 0.1 12.1 0.1 0.93 9.1 0.0 2.4 2 0 0 2 2 2 0 DNA polymerase III, theta subunit TPR_2 PF07719.12 gi|257387534|ref|YP_003177307.1| - 0.2 11.6 2.5 0.74 9.8 0.5 3.0 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_8 PF13181.1 gi|257387534|ref|YP_003177307.1| - 0.21 11.4 0.6 2.6 8.0 0.1 2.8 3 0 0 3 3 3 0 Tetratricopeptide repeat PIN PF01850.16 gi|257387535|ref|YP_003177308.1| - 6.3e-18 65.2 1.9 7e-18 65.1 1.3 1.0 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.1 gi|257387535|ref|YP_003177308.1| - 4.1e-07 30.6 2.5 5e-07 30.4 1.7 1.1 1 0 0 1 1 1 1 PIN domain Aldo_ket_red PF00248.16 gi|257387537|ref|YP_003177310.1| - 6.8e-72 241.6 0.0 8.1e-72 241.4 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family VanZ PF04892.7 gi|257387538|ref|YP_003177311.1| - 3.9e-11 43.0 0.6 5.9e-11 42.4 0.4 1.3 1 0 0 1 1 1 1 VanZ like family Epimerase PF01370.16 gi|257387539|ref|YP_003177312.1| - 2.4e-26 92.6 0.1 2.7e-17 63.0 0.0 2.2 1 1 1 2 2 2 2 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|257387539|ref|YP_003177312.1| - 2.9e-14 52.6 0.1 1.3e-13 50.4 0.0 1.8 1 1 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.1 gi|257387539|ref|YP_003177312.1| - 3.3e-13 50.0 0.3 5.8e-13 49.2 0.2 1.4 1 0 0 1 1 1 1 NADH(P)-binding 3Beta_HSD PF01073.14 gi|257387539|ref|YP_003177312.1| - 3.3e-08 32.5 0.0 2.3e-06 26.5 0.0 2.1 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NmrA PF05368.8 gi|257387539|ref|YP_003177312.1| - 7.2e-06 25.4 0.0 5.6e-05 22.5 0.0 2.2 2 0 0 2 2 2 1 NmrA-like family adh_short PF00106.20 gi|257387539|ref|YP_003177312.1| - 0.024 14.5 0.3 0.053 13.4 0.2 1.6 1 0 0 1 1 1 0 short chain dehydrogenase Glyco_trans_4_4 PF13579.1 gi|257387539|ref|YP_003177312.1| - 0.054 13.6 2.2 0.2 11.7 1.5 2.3 1 1 0 1 1 1 0 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|257387539|ref|YP_003177312.1| - 0.059 13.0 0.0 0.17 11.5 0.0 1.8 2 0 0 2 2 2 0 Glycosyltransferase Family 4 TrkA_N PF02254.13 gi|257387539|ref|YP_003177312.1| - 0.072 13.0 0.0 0.29 11.1 0.0 2.0 2 0 0 2 2 2 0 TrkA-N domain DHFR_1 PF00186.14 gi|257387540|ref|YP_003177313.1| - 1e-37 129.2 0.0 1.2e-37 129.0 0.0 1.0 1 0 0 1 1 1 1 Dihydrofolate reductase iPGM_N PF06415.8 gi|257387541|ref|YP_003177314.1| - 1.9e-74 249.7 0.0 2.8e-74 249.2 0.0 1.3 1 0 0 1 1 1 1 BPG-independent PGAM N-terminus (iPGM_N) Metalloenzyme PF01676.13 gi|257387541|ref|YP_003177314.1| - 8.2e-74 248.1 0.1 9.3e-74 247.9 0.1 1.0 1 0 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.17 gi|257387541|ref|YP_003177314.1| - 1e-06 28.3 0.3 1.9e-06 27.4 0.1 1.5 2 0 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase PglZ PF08665.7 gi|257387541|ref|YP_003177314.1| - 0.00055 19.6 0.1 0.001 18.7 0.1 1.4 1 0 0 1 1 1 1 PglZ domain Sulfatase PF00884.18 gi|257387541|ref|YP_003177314.1| - 0.00082 18.6 0.1 0.002 17.3 0.0 1.8 2 0 0 2 2 2 1 Sulfatase CBM_5_12 PF02839.9 gi|257387542|ref|YP_003177315.1| - 2.9e-30 103.5 30.2 8.7e-16 57.2 6.1 2.9 3 0 0 3 3 3 2 Carbohydrate binding domain CBM_5_12_2 PF14600.1 gi|257387542|ref|YP_003177315.1| - 8e-07 28.6 10.8 0.0045 16.5 1.8 2.7 2 0 0 2 2 2 2 Cellulose-binding domain bPH_3 PF14470.1 gi|257387543|ref|YP_003177316.1| - 4.3e-05 23.6 0.0 0.00019 21.6 0.0 1.9 1 1 0 1 1 1 1 Bacterial PH domain TPR_1 PF00515.23 gi|257387543|ref|YP_003177316.1| - 0.094 12.3 3.2 3.5 7.3 0.3 2.5 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_2 PF07719.12 gi|257387543|ref|YP_003177316.1| - 0.23 11.4 4.0 4 7.6 0.4 3.1 2 0 0 2 2 2 0 Tetratricopeptide repeat FUSC PF04632.7 gi|257387543|ref|YP_003177316.1| - 8 4.7 15.6 10 4.3 10.8 1.2 1 0 0 1 1 1 0 Fusaric acid resistance protein family QRPTase_C PF01729.14 gi|257387544|ref|YP_003177317.1| - 1.1e-55 187.7 3.1 1.4e-55 187.3 2.1 1.1 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.11 gi|257387544|ref|YP_003177317.1| - 1.7e-20 72.6 0.4 3.9e-20 71.4 0.1 1.8 2 0 0 2 2 2 1 Quinolinate phosphoribosyl transferase, N-terminal domain Ribul_P_3_epim PF00834.14 gi|257387544|ref|YP_003177317.1| - 0.01 14.9 0.1 0.038 13.1 0.0 2.0 2 1 0 2 2 2 0 Ribulose-phosphate 3 epimerase family DUF3123 PF11321.3 gi|257387544|ref|YP_003177317.1| - 0.2 11.9 5.9 0.095 12.9 2.3 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3123) FAD_binding_2 PF00890.19 gi|257387545|ref|YP_003177318.1| - 3.7e-76 256.6 6.6 6.6e-76 255.8 4.6 1.4 1 1 0 1 1 1 1 FAD binding domain DAO PF01266.19 gi|257387545|ref|YP_003177318.1| - 6.3e-11 41.7 3.6 9.9e-09 34.5 0.1 3.1 3 1 0 4 4 4 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|257387545|ref|YP_003177318.1| - 4.3e-10 39.8 2.3 0.0001 22.2 0.0 3.1 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|257387545|ref|YP_003177318.1| - 4.4e-07 29.1 1.5 0.00048 19.1 1.6 2.2 2 0 0 2 2 2 2 Glucose inhibited division protein A FAD_oxidored PF12831.2 gi|257387545|ref|YP_003177318.1| - 5.6e-07 28.9 2.3 1.1e-06 28.0 1.1 1.8 2 0 0 2 2 2 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|257387545|ref|YP_003177318.1| - 1.1e-06 27.3 0.5 0.0064 15.0 0.4 2.2 2 0 0 2 2 2 2 HI0933-like protein NAD_binding_8 PF13450.1 gi|257387545|ref|YP_003177318.1| - 0.00014 21.8 0.2 0.00031 20.6 0.2 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Succ_DH_flav_C PF02910.15 gi|257387545|ref|YP_003177318.1| - 0.00016 21.5 0.2 0.00038 20.3 0.1 1.5 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term Thi4 PF01946.12 gi|257387545|ref|YP_003177318.1| - 0.0018 17.4 0.1 0.0033 16.5 0.1 1.4 1 0 0 1 1 1 1 Thi4 family FAD_binding_3 PF01494.14 gi|257387545|ref|YP_003177318.1| - 0.0026 16.8 0.2 0.0051 15.9 0.1 1.5 1 0 0 1 1 1 1 FAD binding domain AlaDh_PNT_C PF01262.16 gi|257387545|ref|YP_003177318.1| - 0.04 13.4 0.7 0.15 11.6 0.1 2.1 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain DXP_reductoisom PF02670.11 gi|257387545|ref|YP_003177318.1| - 0.082 13.4 1.4 0.21 12.1 0.4 2.0 2 0 0 2 2 2 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase NadA PF02445.11 gi|257387546|ref|YP_003177319.1| - 3.4e-101 337.9 0.1 3.9e-101 337.7 0.0 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein Glyco_hydro_71 PF03659.9 gi|257387546|ref|YP_003177319.1| - 0.059 11.8 0.1 0.09 11.2 0.0 1.2 1 0 0 1 1 1 0 Glycosyl hydrolase family 71 HMG-CoA_red PF00368.13 gi|257387548|ref|YP_003177321.1| - 3e-139 463.8 7.3 3.4e-139 463.6 5.0 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase PQQ_2 PF13360.1 gi|257387549|ref|YP_003177322.1| - 1.6e-25 89.9 7.0 3.6e-12 46.2 0.3 3.7 2 1 1 3 3 3 3 PQQ-like domain PQQ PF01011.16 gi|257387549|ref|YP_003177322.1| - 3.8e-16 57.7 6.5 0.0019 17.6 0.0 5.9 6 0 0 6 6 6 4 PQQ enzyme repeat PQQ_3 PF13570.1 gi|257387549|ref|YP_003177322.1| - 8.5e-15 54.4 29.4 0.0011 19.1 0.2 7.8 8 0 0 8 8 8 5 PQQ-like domain TAT_signal PF10518.4 gi|257387549|ref|YP_003177322.1| - 0.0022 17.8 0.4 0.0065 16.3 0.2 1.9 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence RseC_MucC PF04246.7 gi|257387550|ref|YP_003177323.1| - 8.1 6.0 12.8 0.49 9.9 4.4 2.0 1 1 1 2 2 2 0 Positive regulator of sigma(E), RseC/MucC DUF1922 PF09082.5 gi|257387551|ref|YP_003177324.1| - 0.062 13.3 0.2 0.095 12.7 0.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1922) zinc_ribbon_5 PF13719.1 gi|257387551|ref|YP_003177324.1| - 0.087 12.4 2.3 4.5 6.9 0.2 2.5 2 0 0 2 2 2 0 zinc-ribbon domain Rrf2 PF02082.15 gi|257387551|ref|YP_003177324.1| - 0.14 12.3 0.1 0.49 10.5 0.0 1.9 2 1 0 2 2 2 0 Transcriptional regulator zinc_ribbon_4 PF13717.1 gi|257387551|ref|YP_003177324.1| - 0.16 11.6 2.0 4.2 7.1 0.2 2.5 2 0 0 2 2 2 0 zinc-ribbon domain HypA PF01155.14 gi|257387551|ref|YP_003177324.1| - 0.18 11.5 0.6 0.32 10.6 0.4 1.4 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-UDP PF14569.1 gi|257387551|ref|YP_003177324.1| - 0.28 10.9 1.8 0.5 10.1 0.7 1.8 2 0 0 2 2 2 0 Zinc-binding RING-finger Zn-ribbon_8 PF09723.5 gi|257387551|ref|YP_003177324.1| - 0.7 9.8 4.7 7.5 6.5 2.6 2.7 2 1 0 2 2 2 0 Zinc ribbon domain Abi PF02517.11 gi|257387552|ref|YP_003177325.1| - 1.5e-14 53.8 3.2 1.5e-14 53.8 2.2 2.2 2 1 0 2 2 2 1 CAAX protease self-immunity Cupin_2 PF07883.6 gi|257387553|ref|YP_003177326.1| - 2.8e-21 74.7 2.6 4.5e-21 74.1 1.8 1.3 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|257387553|ref|YP_003177326.1| - 2.6e-09 36.8 0.2 3.5e-09 36.4 0.2 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_1 PF00190.17 gi|257387553|ref|YP_003177326.1| - 3.1e-06 26.6 0.3 3.4e-06 26.5 0.2 1.1 1 0 0 1 1 1 1 Cupin Cupin_6 PF12852.2 gi|257387553|ref|YP_003177326.1| - 0.0016 18.1 0.2 0.0017 18.0 0.1 1.1 1 0 0 1 1 1 1 Cupin CENP-C_C PF11699.3 gi|257387553|ref|YP_003177326.1| - 0.0016 18.3 0.0 0.0022 17.9 0.0 1.2 1 0 0 1 1 1 1 Mif2/CENP-C like Cupin_7 PF12973.2 gi|257387553|ref|YP_003177326.1| - 0.0033 17.2 0.2 0.0038 17.0 0.1 1.2 1 0 0 1 1 1 1 ChrR Cupin-like domain MannoseP_isomer PF01050.13 gi|257387553|ref|YP_003177326.1| - 0.0036 16.9 0.0 0.0044 16.6 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Cupin_3 PF05899.7 gi|257387553|ref|YP_003177326.1| - 0.0038 16.5 0.6 0.012 14.9 0.2 1.8 1 1 1 2 2 2 1 Protein of unknown function (DUF861) AraC_binding_2 PF14525.1 gi|257387553|ref|YP_003177326.1| - 0.004 16.7 0.2 0.0044 16.6 0.1 1.1 1 0 0 1 1 1 1 AraC-binding-like domain DUF1637 PF07847.7 gi|257387553|ref|YP_003177326.1| - 0.025 13.9 1.0 0.5 9.6 0.3 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1637) ARD PF03079.9 gi|257387553|ref|YP_003177326.1| - 0.089 12.7 0.0 0.11 12.4 0.0 1.2 1 0 0 1 1 1 0 ARD/ARD' family Glyco_hydro_20 PF00728.17 gi|257387554|ref|YP_003177327.1| - 1.9e-87 293.7 1.7 5.9e-87 292.0 1.2 1.7 1 1 0 1 1 1 1 Glycosyl hydrolase family 20, catalytic domain PKD PF00801.15 gi|257387554|ref|YP_003177327.1| - 2.2e-34 116.9 28.5 1e-18 66.8 4.8 3.2 3 0 0 3 3 3 2 PKD domain CBM_5_12 PF02839.9 gi|257387554|ref|YP_003177327.1| - 3.6e-26 90.4 25.0 5.9e-14 51.3 5.5 3.0 2 0 0 2 2 2 2 Carbohydrate binding domain Glyco_hydro_20b PF02838.10 gi|257387554|ref|YP_003177327.1| - 3.8e-21 75.8 1.2 1e-20 74.4 0.0 2.3 2 0 0 2 2 2 1 Glycosyl hydrolase family 20, domain 2 Y_Y_Y PF07495.8 gi|257387554|ref|YP_003177327.1| - 1.6e-05 24.5 0.3 0.068 12.9 0.1 2.6 2 0 0 2 2 2 2 Y_Y_Y domain CBM_5_12_2 PF14600.1 gi|257387554|ref|YP_003177327.1| - 4e-05 23.1 18.6 0.00061 19.3 1.5 3.2 3 0 0 3 3 3 2 Cellulose-binding domain ChitinaseA_N PF08329.5 gi|257387554|ref|YP_003177327.1| - 0.0026 17.5 8.3 0.34 10.6 0.6 2.5 2 0 0 2 2 2 2 Chitinase A, N-terminal domain BiPBP_C PF06832.7 gi|257387554|ref|YP_003177327.1| - 0.0037 17.1 0.2 1.3 8.9 0.0 3.4 3 1 1 4 4 4 1 Penicillin-Binding Protein C-terminus Family Glycohydro_20b2 PF14845.1 gi|257387554|ref|YP_003177327.1| - 0.004 17.8 0.0 0.012 16.3 0.0 1.8 1 0 0 1 1 1 1 beta-acetyl hexosaminidase like FctA PF12892.2 gi|257387554|ref|YP_003177327.1| - 0.005 17.6 9.2 0.61 10.9 0.9 2.5 2 0 0 2 2 2 2 T surface-antigen of pili DUF4625 PF15418.1 gi|257387554|ref|YP_003177327.1| - 0.012 15.7 2.0 4.1 7.5 0.0 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF4625) YtkA PF13115.1 gi|257387554|ref|YP_003177327.1| - 0.05 13.9 1.2 0.4 11.0 0.5 2.6 1 1 0 1 1 1 0 YtkA-like Cadherin PF00028.12 gi|257387554|ref|YP_003177327.1| - 0.18 12.0 1.7 18 5.6 0.1 2.7 2 0 0 2 2 2 0 Cadherin domain REJ PF02010.10 gi|257387554|ref|YP_003177327.1| - 0.83 7.8 12.9 1 7.6 4.1 3.0 1 1 1 2 2 2 0 REJ domain Big_2 PF02368.13 gi|257387554|ref|YP_003177327.1| - 3.4 7.6 19.5 4.2 7.3 2.0 3.5 2 1 1 3 3 3 0 Bacterial Ig-like domain (group 2) Iso_dh PF00180.15 gi|257387555|ref|YP_003177328.1| - 6e-100 334.5 0.0 8.2e-100 334.1 0.0 1.2 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Asparaginase_2 PF01112.13 gi|257387556|ref|YP_003177329.1| - 1.8e-53 181.3 10.9 2.7e-53 180.7 7.5 1.2 1 0 0 1 1 1 1 Asparaginase DUF3995 PF13160.1 gi|257387557|ref|YP_003177330.1| - 0.003 17.5 0.9 0.0042 17.1 0.7 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3995) DUF4040 PF13244.1 gi|257387557|ref|YP_003177330.1| - 0.036 14.0 8.1 0.045 13.7 5.6 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4040) Peptidase_M24 PF00557.19 gi|257387558|ref|YP_003177331.1| - 7e-43 146.6 0.9 9.2e-43 146.2 0.6 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 RecR PF02132.10 gi|257387559|ref|YP_003177332.1| - 0.022 14.1 1.9 0.22 10.9 0.1 2.2 2 0 0 2 2 2 0 RecR protein C1_2 PF03107.11 gi|257387559|ref|YP_003177332.1| - 0.027 14.6 2.9 3.3 7.8 0.1 2.2 2 0 0 2 2 2 0 C1 domain Cas_CXXC_CXXC PF09706.5 gi|257387559|ref|YP_003177332.1| - 0.072 13.2 0.4 0.11 12.6 0.3 1.3 1 1 0 1 1 1 0 CRISPR-associated protein (Cas_CXXC_CXXC) RNA_POL_M_15KD PF02150.11 gi|257387559|ref|YP_003177332.1| - 0.097 12.3 0.8 2.7 7.7 0.1 2.2 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit Prim_Zn_Ribbon PF08273.7 gi|257387559|ref|YP_003177332.1| - 0.12 12.4 0.5 12 6.0 0.1 2.2 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase Nudix_N_2 PF14803.1 gi|257387559|ref|YP_003177332.1| - 0.14 11.9 2.0 5.3 6.8 0.1 2.2 2 0 0 2 2 2 0 Nudix N-terminal DUF866 PF05907.8 gi|257387559|ref|YP_003177332.1| - 0.16 11.4 0.8 0.17 11.3 0.6 1.2 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF866) zf-FPG_IleRS PF06827.9 gi|257387559|ref|YP_003177332.1| - 0.47 10.1 2.8 5.1 6.8 0.2 2.2 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS DZR PF12773.2 gi|257387559|ref|YP_003177332.1| - 0.74 9.6 3.5 3.1 7.6 2.4 1.9 1 1 0 1 1 1 0 Double zinc ribbon Toxin_5 PF05294.8 gi|257387559|ref|YP_003177332.1| - 1.1 9.4 5.5 4.1 7.6 0.7 2.5 2 1 0 2 2 2 0 Scorpion short toxin OrfB_Zn_ribbon PF07282.6 gi|257387559|ref|YP_003177332.1| - 4.1 7.1 6.5 97 2.7 4.5 2.1 1 1 0 1 1 1 0 Putative transposase DNA-binding domain HIT PF01230.18 gi|257387560|ref|YP_003177333.1| - 1.3e-11 44.8 0.0 3.2e-11 43.6 0.0 1.6 2 0 0 2 2 2 1 HIT domain CwfJ_C_1 PF04677.10 gi|257387560|ref|YP_003177333.1| - 1.3e-06 28.0 0.0 2.5e-06 27.1 0.0 1.4 1 0 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 DcpS_C PF11969.3 gi|257387560|ref|YP_003177333.1| - 2.9e-05 24.2 0.0 5.4e-05 23.4 0.0 1.4 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding HATPase_c PF02518.21 gi|257387561|ref|YP_003177334.1| - 6e-19 67.7 0.0 9.8e-19 67.1 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|257387561|ref|YP_003177334.1| - 6.5e-12 45.2 0.2 4.9e-11 42.4 0.1 2.4 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.5 gi|257387561|ref|YP_003177334.1| - 5.9e-06 26.2 0.1 3e-05 24.0 0.1 2.2 1 1 0 1 1 1 1 PAS fold PAS_9 PF13426.1 gi|257387561|ref|YP_003177334.1| - 0.00025 21.3 0.0 0.01 16.2 0.0 2.9 2 1 0 2 2 2 1 PAS domain HATPase_c_2 PF13581.1 gi|257387561|ref|YP_003177334.1| - 0.0011 18.7 0.0 0.0024 17.6 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain Cation_ATPase_C PF00689.16 gi|257387561|ref|YP_003177334.1| - 0.027 14.0 3.0 0.051 13.1 2.1 1.4 1 0 0 1 1 1 0 Cation transporting ATPase, C-terminus PAS_10 PF13596.1 gi|257387561|ref|YP_003177334.1| - 0.054 13.7 0.0 0.11 12.7 0.0 1.4 1 0 0 1 1 1 0 PAS domain PAS PF00989.19 gi|257387561|ref|YP_003177334.1| - 0.065 13.0 0.0 0.47 10.2 0.0 2.2 2 0 0 2 2 2 0 PAS fold HATPase_c_3 PF13589.1 gi|257387561|ref|YP_003177334.1| - 0.13 11.8 0.0 0.23 11.1 0.0 1.3 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Cation_efflux PF01545.16 gi|257387562|ref|YP_003177335.1| - 2e-59 201.0 0.3 2.2e-59 200.8 0.2 1.0 1 0 0 1 1 1 1 Cation efflux family DUF308 PF03729.8 gi|257387563|ref|YP_003177336.1| - 0.02 14.9 0.8 0.02 14.9 0.6 1.7 2 0 0 2 2 2 0 Short repeat of unknown function (DUF308) DUF3816 PF12822.2 gi|257387563|ref|YP_003177336.1| - 0.031 14.1 1.0 0.037 13.9 0.7 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3816) Bac_Ubq_Cox PF01654.12 gi|257387563|ref|YP_003177336.1| - 0.049 12.0 0.7 0.044 12.2 0.5 1.2 1 0 0 1 1 1 0 Bacterial Cytochrome Ubiquinol Oxidase Arteri_Gl PF00951.13 gi|257387563|ref|YP_003177336.1| - 0.053 13.1 2.8 0.061 12.9 1.9 1.1 1 0 0 1 1 1 0 Arterivirus GL envelope glycoprotein Zip PF02535.17 gi|257387563|ref|YP_003177336.1| - 0.099 11.6 1.7 0.096 11.6 1.2 1.1 1 0 0 1 1 1 0 ZIP Zinc transporter Chromate_transp PF02417.10 gi|257387563|ref|YP_003177336.1| - 0.13 11.8 4.2 0.15 11.6 2.9 1.1 1 0 0 1 1 1 0 Chromate transporter Rab5ip PF07019.7 gi|257387564|ref|YP_003177337.1| - 0.072 13.2 0.2 0.072 13.2 0.1 2.5 1 1 1 2 2 2 0 Rab5-interacting protein (Rab5ip) Claudin_2 PF13903.1 gi|257387564|ref|YP_003177337.1| - 0.089 12.4 3.4 0.092 12.4 2.3 1.2 1 0 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction ResB PF05140.9 gi|257387564|ref|YP_003177337.1| - 0.11 10.9 0.7 0.15 10.5 0.5 1.1 1 0 0 1 1 1 0 ResB-like family DUF2892 PF11127.3 gi|257387564|ref|YP_003177337.1| - 2.5 7.9 6.0 0.47 10.3 0.4 2.3 2 1 1 3 3 3 0 Protein of unknown function (DUF2892) HTH_20 PF12840.2 gi|257387565|ref|YP_003177338.1| - 4.5e-11 42.3 0.3 7.1e-11 41.7 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|257387565|ref|YP_003177338.1| - 1.2e-06 27.7 0.0 1.6e-06 27.3 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|257387565|ref|YP_003177338.1| - 2.8e-06 26.8 0.0 4.6e-06 26.2 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|257387565|ref|YP_003177338.1| - 4.3e-06 26.3 0.0 6.3e-06 25.7 0.0 1.5 1 1 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|257387565|ref|YP_003177338.1| - 5.1e-06 25.9 0.1 8.5e-06 25.2 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|257387565|ref|YP_003177338.1| - 1.3e-05 24.6 0.1 2.9e-05 23.5 0.1 1.6 1 1 0 1 1 1 1 AsnC-type helix-turn-helix domain TrmB PF01978.14 gi|257387565|ref|YP_003177338.1| - 0.00024 20.7 0.0 0.00036 20.1 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.14 gi|257387565|ref|YP_003177338.1| - 0.00053 19.8 0.0 0.00085 19.2 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_11 PF08279.7 gi|257387565|ref|YP_003177338.1| - 0.00055 19.5 0.0 0.001 18.6 0.0 1.5 1 0 0 1 1 1 1 HTH domain Crp PF00325.15 gi|257387565|ref|YP_003177338.1| - 0.0017 17.7 0.4 0.0058 16.0 0.0 2.1 3 0 0 3 3 2 1 Bacterial regulatory proteins, crp family HTH_27 PF13463.1 gi|257387565|ref|YP_003177338.1| - 0.0019 18.4 0.0 0.0039 17.4 0.0 1.5 1 1 0 1 1 1 1 Winged helix DNA-binding domain TetR_N PF00440.18 gi|257387565|ref|YP_003177338.1| - 0.0027 17.2 0.0 0.0048 16.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family PadR PF03551.9 gi|257387565|ref|YP_003177338.1| - 0.0031 17.2 0.0 0.0049 16.6 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family Rrf2 PF02082.15 gi|257387565|ref|YP_003177338.1| - 0.0037 17.3 0.0 0.006 16.6 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator GntR PF00392.16 gi|257387565|ref|YP_003177338.1| - 0.0062 15.9 0.2 0.0097 15.3 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_23 PF13384.1 gi|257387565|ref|YP_003177338.1| - 0.0074 15.9 0.0 0.012 15.1 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_r4_2 PF08281.7 gi|257387565|ref|YP_003177338.1| - 0.0091 15.4 0.0 0.015 14.7 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_Crp_2 PF13545.1 gi|257387565|ref|YP_003177338.1| - 0.018 14.7 0.0 0.036 13.8 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_30 PF13556.1 gi|257387565|ref|YP_003177338.1| - 0.02 14.4 0.0 0.039 13.5 0.0 1.5 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain HTH_29 PF13551.1 gi|257387565|ref|YP_003177338.1| - 0.022 14.9 0.0 0.032 14.3 0.0 1.4 1 1 0 1 1 1 0 Winged helix-turn helix MarR PF01047.17 gi|257387565|ref|YP_003177338.1| - 0.025 14.2 0.0 0.045 13.4 0.0 1.4 1 0 0 1 1 1 0 MarR family DUF746 PF05344.6 gi|257387565|ref|YP_003177338.1| - 0.075 12.5 0.1 0.15 11.6 0.0 1.5 1 1 0 1 1 1 0 Domain of Unknown Function (DUF746) B-block_TFIIIC PF04182.7 gi|257387565|ref|YP_003177338.1| - 0.078 12.8 0.0 0.094 12.5 0.0 1.1 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_DeoR PF08220.7 gi|257387565|ref|YP_003177338.1| - 0.079 12.5 0.0 0.15 11.6 0.0 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Sigma70_ECF PF07638.6 gi|257387565|ref|YP_003177338.1| - 0.11 12.1 0.0 0.17 11.5 0.0 1.3 1 1 0 1 1 1 0 ECF sigma factor CARDB PF07705.6 gi|257387566|ref|YP_003177339.1| - 2.2e-05 24.4 17.4 0.018 15.0 0.8 4.9 2 1 1 4 4 4 3 CARDB DUF4352 PF11611.3 gi|257387566|ref|YP_003177339.1| - 0.0013 18.8 1.6 0.005 16.9 0.1 2.7 3 0 0 3 3 3 1 Domain of unknown function (DUF4352) Alpha_adaptinC2 PF02883.15 gi|257387566|ref|YP_003177339.1| - 0.0022 18.3 3.0 2.9 8.2 0.4 3.6 3 1 1 4 4 4 2 Adaptin C-terminal domain T2SI PF02501.12 gi|257387566|ref|YP_003177339.1| - 0.6 10.1 5.0 13 5.8 0.1 4.4 4 1 1 5 5 5 0 Type II secretion system (T2SS), protein I ABC_tran PF00005.22 gi|257387567|ref|YP_003177340.1| - 6.6e-34 117.1 0.0 8.4e-34 116.8 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|257387567|ref|YP_003177340.1| - 3.3e-10 40.4 0.0 0.00079 19.4 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|257387567|ref|YP_003177340.1| - 1.9e-05 24.0 0.0 0.16 11.2 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|257387567|ref|YP_003177340.1| - 0.00021 20.7 0.1 0.00039 19.8 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|257387567|ref|YP_003177340.1| - 0.00076 19.5 0.6 0.0014 18.6 0.4 1.7 1 1 0 1 1 1 1 AAA ATPase domain DUF258 PF03193.11 gi|257387567|ref|YP_003177340.1| - 0.0015 17.7 0.1 0.0023 17.1 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|257387567|ref|YP_003177340.1| - 0.0059 17.4 0.9 0.013 16.3 0.5 1.8 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|257387567|ref|YP_003177340.1| - 0.006 16.0 0.1 0.012 15.1 0.1 1.4 1 0 0 1 1 1 1 AAA-like domain MMR_HSR1 PF01926.18 gi|257387567|ref|YP_003177340.1| - 0.007 16.3 0.1 0.012 15.6 0.1 1.7 1 1 0 1 1 1 1 50S ribosome-binding GTPase AAA_22 PF13401.1 gi|257387567|ref|YP_003177340.1| - 0.0081 16.3 0.1 0.012 15.7 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|257387567|ref|YP_003177340.1| - 0.01 15.2 0.3 0.036 13.4 0.0 2.0 3 0 0 3 3 3 0 AAA domain AAA_33 PF13671.1 gi|257387567|ref|YP_003177340.1| - 0.013 15.3 1.2 0.049 13.5 0.5 2.1 2 1 0 2 2 2 0 AAA domain SbcCD_C PF13558.1 gi|257387567|ref|YP_003177340.1| - 0.055 13.3 0.2 0.65 9.9 0.1 2.4 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit MobB PF03205.9 gi|257387567|ref|YP_003177340.1| - 0.055 13.1 0.6 0.2 11.3 0.1 2.1 2 1 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_18 PF13238.1 gi|257387567|ref|YP_003177340.1| - 0.064 13.5 1.5 0.14 12.4 1.1 2.0 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|257387567|ref|YP_003177340.1| - 0.064 12.8 0.4 0.39 10.2 0.0 2.0 2 0 0 2 2 2 0 AAA domain T2SE PF00437.15 gi|257387567|ref|YP_003177340.1| - 0.097 11.5 0.0 0.13 11.1 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_23 PF13476.1 gi|257387567|ref|YP_003177340.1| - 0.14 12.5 0.0 0.21 11.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain FtsX PF02687.16 gi|257387568|ref|YP_003177341.1| - 9.1e-20 70.6 6.9 9.1e-20 70.6 4.8 2.0 2 0 0 2 2 2 1 FtsX-like permease family MacB_PCD PF12704.2 gi|257387568|ref|YP_003177341.1| - 5.2e-19 68.7 1.7 5.2e-19 68.7 1.2 2.7 3 0 0 3 3 3 1 MacB-like periplasmic core domain CDC48_N PF02359.13 gi|257387568|ref|YP_003177341.1| - 0.056 13.3 0.0 0.15 12.0 0.0 1.7 1 0 0 1 1 1 0 Cell division protein 48 (CDC48), N-terminal domain Yip1 PF04893.12 gi|257387569|ref|YP_003177342.1| - 9.7e-21 74.0 19.8 1.2e-20 73.6 13.7 1.1 1 0 0 1 1 1 1 Yip1 domain DUF1282 PF06930.7 gi|257387569|ref|YP_003177342.1| - 3.5e-08 33.2 9.4 4.6e-08 32.9 6.5 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1282) DUF1228 PF06779.9 gi|257387569|ref|YP_003177342.1| - 0.03 14.3 1.2 0.03 14.3 0.8 2.4 2 1 1 3 3 3 0 Protein of unknown function (DUF1228) TM_helix PF05552.7 gi|257387569|ref|YP_003177342.1| - 0.55 9.9 5.5 0.44 10.2 1.9 2.3 2 0 0 2 2 2 0 Conserved TM helix VMA21 PF09446.5 gi|257387569|ref|YP_003177342.1| - 2.9 7.9 7.7 0.71 9.8 0.3 2.7 2 1 0 2 2 2 0 VMA21-like domain PsbJ PF01788.12 gi|257387569|ref|YP_003177342.1| - 7.2 6.2 11.5 0.37 10.3 3.2 2.6 2 0 0 2 2 2 0 PsbJ Radical_SAM PF04055.16 gi|257387570|ref|YP_003177343.1| - 3e-21 76.3 0.0 4.6e-21 75.6 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily UPF0004 PF00919.15 gi|257387570|ref|YP_003177343.1| - 6.4e-19 67.6 0.0 1.3e-18 66.5 0.0 1.6 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 TRAM PF01938.15 gi|257387570|ref|YP_003177343.1| - 1.7e-07 30.8 0.1 4.3e-07 29.6 0.0 1.7 1 0 0 1 1 1 1 TRAM domain adh_short_C2 PF13561.1 gi|257387572|ref|YP_003177345.1| - 3.7e-37 128.3 0.4 4.5e-37 128.1 0.3 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.20 gi|257387572|ref|YP_003177345.1| - 5.2e-36 124.0 9.8 7.9e-36 123.4 6.8 1.3 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.5 gi|257387572|ref|YP_003177345.1| - 7.3e-17 61.6 10.4 2.9e-16 59.6 7.2 1.8 1 1 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|257387572|ref|YP_003177345.1| - 1.4e-06 27.9 2.9 2.3e-06 27.2 2.0 1.4 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Saccharop_dh PF03435.13 gi|257387572|ref|YP_003177345.1| - 1.3e-05 24.4 0.1 1.8e-05 23.9 0.0 1.4 1 1 0 1 1 1 1 Saccharopine dehydrogenase 3Beta_HSD PF01073.14 gi|257387572|ref|YP_003177345.1| - 2.6e-05 23.0 0.5 3.4e-05 22.6 0.3 1.3 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.1 gi|257387572|ref|YP_003177345.1| - 0.0017 18.3 7.5 0.0038 17.2 5.2 1.7 1 1 0 1 1 1 1 NADH(P)-binding Shikimate_DH PF01488.15 gi|257387572|ref|YP_003177345.1| - 0.0045 17.0 1.5 0.021 14.9 0.6 2.2 2 1 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase 3HCDH_N PF02737.13 gi|257387572|ref|YP_003177345.1| - 0.0052 16.4 3.9 0.0066 16.1 2.0 1.6 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Glyco_trans_4_4 PF13579.1 gi|257387572|ref|YP_003177345.1| - 0.011 15.8 4.0 0.76 9.8 0.0 2.4 2 1 0 2 2 2 0 Glycosyl transferase 4-like domain THF_DHG_CYH_C PF02882.14 gi|257387572|ref|YP_003177345.1| - 0.032 13.2 0.5 0.29 10.1 0.0 2.4 1 1 2 3 3 3 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain PRAI PF00697.17 gi|257387572|ref|YP_003177345.1| - 0.077 12.5 0.0 0.16 11.4 0.0 1.4 1 1 0 1 1 1 0 N-(5'phosphoribosyl)anthranilate (PRA) isomerase RmlD_sub_bind PF04321.12 gi|257387572|ref|YP_003177345.1| - 0.1 11.4 4.2 0.15 10.8 2.9 1.2 1 0 0 1 1 1 0 RmlD substrate binding domain IlvN PF07991.7 gi|257387572|ref|YP_003177345.1| - 0.12 11.7 1.4 0.13 11.6 0.4 1.6 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, catalytic domain DeoC PF01791.4 gi|257387573|ref|YP_003177346.1| - 1e-31 110.0 1.1 1.2e-31 109.7 0.8 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase DUF63 PF01889.12 gi|257387574|ref|YP_003177347.1| - 2e-17 64.1 5.2 3.3e-17 63.4 3.6 1.3 1 1 0 1 1 1 1 Membrane protein of unknown function DUF63 PNP_UDP_1 PF01048.15 gi|257387576|ref|YP_003177349.1| - 4e-46 156.8 8.0 4.5e-46 156.7 5.5 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily DUF4434 PF14488.1 gi|257387576|ref|YP_003177349.1| - 0.15 11.7 0.0 0.54 9.9 0.0 1.8 2 1 0 2 2 2 0 Domain of unknown function (DUF4434) Usp PF00582.21 gi|257387577|ref|YP_003177350.1| - 1.1e-05 25.5 3.2 0.0042 17.2 1.1 3.4 2 2 1 3 3 3 2 Universal stress protein family HPP PF04982.8 gi|257387577|ref|YP_003177350.1| - 2e-05 24.4 5.8 3.8e-05 23.4 4.0 1.5 1 0 0 1 1 1 1 HPP family Methyltransf_16 PF10294.4 gi|257387577|ref|YP_003177350.1| - 0.19 11.1 0.0 0.32 10.4 0.0 1.3 1 0 0 1 1 1 0 Putative methyltransferase SseC PF04888.7 gi|257387577|ref|YP_003177350.1| - 7 5.8 7.2 11 5.1 5.0 1.3 1 0 0 1 1 1 0 Secretion system effector C (SseC) like family TrkA_N PF02254.13 gi|257387578|ref|YP_003177351.1| - 2.6e-28 98.3 0.2 4.3e-28 97.6 0.1 1.3 1 0 0 1 1 1 1 TrkA-N domain Ion_trans_2 PF07885.11 gi|257387578|ref|YP_003177351.1| - 8.4e-13 47.8 4.5 1e-12 47.6 1.8 2.1 2 0 0 2 2 2 1 Ion channel OCD_Mu_crystall PF02423.10 gi|257387578|ref|YP_003177351.1| - 0.013 14.2 0.1 0.025 13.3 0.1 1.3 1 0 0 1 1 1 0 Ornithine cyclodeaminase/mu-crystallin family NTP_transf_3 PF12804.2 gi|257387578|ref|YP_003177351.1| - 0.015 15.4 0.8 0.097 12.7 0.6 2.2 1 1 0 1 1 1 0 MobA-like NTP transferase domain Ion_trans PF00520.26 gi|257387578|ref|YP_003177351.1| - 0.018 14.2 0.1 0.029 13.6 0.0 1.4 1 0 0 1 1 1 0 Ion transport protein NAD_binding_7 PF13241.1 gi|257387578|ref|YP_003177351.1| - 0.026 14.7 0.1 0.099 12.9 0.0 2.0 1 1 1 2 2 2 0 Putative NAD(P)-binding ADH_zinc_N PF00107.21 gi|257387578|ref|YP_003177351.1| - 0.051 13.1 1.1 0.11 11.9 0.1 2.0 2 1 0 2 2 2 0 Zinc-binding dehydrogenase Saccharop_dh PF03435.13 gi|257387578|ref|YP_003177351.1| - 0.13 11.1 0.2 1.2 8.0 0.1 2.1 1 1 0 1 1 1 0 Saccharopine dehydrogenase Pam17 PF08566.5 gi|257387578|ref|YP_003177351.1| - 0.21 11.2 0.2 0.39 10.3 0.1 1.5 1 0 0 1 1 1 0 Mitochondrial import protein Pam17 TrkA_C PF02080.16 gi|257387579|ref|YP_003177352.1| - 4.4e-14 51.8 0.2 1e-12 47.4 0.0 2.6 2 0 0 2 2 2 1 TrkA-C domain CorC_HlyC PF03471.12 gi|257387579|ref|YP_003177352.1| - 0.094 12.5 0.2 0.3 10.8 0.0 2.0 2 0 0 2 2 2 0 Transporter associated domain 5TM-5TMR_LYT PF07694.7 gi|257387579|ref|YP_003177352.1| - 0.12 11.7 6.7 0.19 11.0 4.6 1.2 1 0 0 1 1 1 0 5TMR of 5TMR-LYT TrkA_C PF02080.16 gi|257387580|ref|YP_003177353.1| - 6.1e-10 38.5 0.2 1.4e-09 37.4 0.1 1.6 1 0 0 1 1 1 1 TrkA-C domain DUF1405 PF07187.6 gi|257387581|ref|YP_003177354.1| - 1.3e-50 171.3 14.5 1.6e-50 171.0 10.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1405) DUF2964 PF11177.3 gi|257387581|ref|YP_003177354.1| - 4.6 7.2 6.3 19 5.2 0.6 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2964) EamA PF00892.15 gi|257387582|ref|YP_003177355.1| - 4.5e-29 101.0 26.2 2.4e-16 59.9 5.1 2.7 2 1 1 3 3 3 2 EamA-like transporter family EmrE PF13536.1 gi|257387582|ref|YP_003177355.1| - 9.8e-06 25.7 31.7 1e-05 25.7 4.4 3.7 2 2 2 4 4 4 2 Multidrug resistance efflux transporter TPT PF03151.11 gi|257387582|ref|YP_003177355.1| - 0.11 12.1 10.8 0.52 9.9 1.3 2.4 2 0 0 2 2 2 0 Triose-phosphate Transporter family PGPGW PF09656.5 gi|257387582|ref|YP_003177355.1| - 0.39 10.0 0.1 0.39 10.0 0.1 4.0 4 1 0 4 4 4 0 Putative transmembrane protein (PGPGW) MarR_2 PF12802.2 gi|257387583|ref|YP_003177356.1| - 7e-05 22.4 0.3 0.00016 21.3 0.2 1.6 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|257387583|ref|YP_003177356.1| - 0.00054 19.5 0.5 0.0041 16.6 0.1 2.6 2 0 0 2 2 2 1 IclR helix-turn-helix domain DUF1724 PF08350.5 gi|257387583|ref|YP_003177356.1| - 0.0007 19.0 0.0 0.0013 18.2 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) Trp_repressor PF01371.14 gi|257387583|ref|YP_003177356.1| - 0.0012 18.7 0.0 0.0039 17.0 0.0 1.9 1 0 0 1 1 1 1 Trp repressor protein TrmB PF01978.14 gi|257387583|ref|YP_003177356.1| - 0.0029 17.2 0.0 0.0068 16.0 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|257387583|ref|YP_003177356.1| - 0.0047 16.5 0.0 0.009 15.6 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_23 PF13384.1 gi|257387583|ref|YP_003177356.1| - 0.007 15.9 1.0 0.014 15.0 0.1 1.9 2 1 0 2 2 2 1 Homeodomain-like domain HTH_24 PF13412.1 gi|257387583|ref|YP_003177356.1| - 0.0074 15.6 0.0 0.016 14.6 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|257387583|ref|YP_003177356.1| - 0.01 15.4 0.1 0.019 14.6 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Crp PF00325.15 gi|257387583|ref|YP_003177356.1| - 0.058 12.8 0.8 0.14 11.6 0.1 1.9 2 0 0 2 2 2 0 Bacterial regulatory proteins, crp family T2SN PF01203.14 gi|257387584|ref|YP_003177357.1| - 0.063 12.8 1.3 0.11 12.0 0.1 1.9 2 1 0 2 2 2 0 Type II secretion system (T2SS), protein N CBM_2 PF00553.14 gi|257387584|ref|YP_003177357.1| - 0.17 11.9 2.5 0.52 10.3 1.7 1.8 1 0 0 1 1 1 0 Cellulose binding domain Fil_haemagg_2 PF13332.1 gi|257387584|ref|YP_003177357.1| - 3.4 7.4 15.3 0.2 11.4 3.0 3.3 2 2 1 3 3 3 0 Haemagluttinin repeat tRNA-synt_1 PF00133.17 gi|257387585|ref|YP_003177358.1| - 2.1e-122 409.1 0.0 1.9e-121 405.9 0.0 1.9 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|257387585|ref|YP_003177358.1| - 7.2e-36 123.2 0.0 1.9e-35 121.8 0.0 1.7 2 0 0 2 2 2 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.6 gi|257387585|ref|YP_003177358.1| - 5.1e-24 84.6 0.1 1.9e-12 46.5 0.1 3.7 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1f PF01921.13 gi|257387585|ref|YP_003177358.1| - 3.2e-05 22.7 0.0 0.0012 17.6 0.0 2.3 2 0 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1_2 PF13603.1 gi|257387585|ref|YP_003177358.1| - 5e-05 22.6 0.0 0.00013 21.3 0.0 1.6 1 1 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.14 gi|257387585|ref|YP_003177358.1| - 8.9e-05 21.7 0.0 0.24 10.4 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain DZR PF12773.2 gi|257387585|ref|YP_003177358.1| - 0.0043 16.8 0.3 0.099 12.4 0.0 2.4 2 0 0 2 2 2 1 Double zinc ribbon zf-dskA_traR PF01258.12 gi|257387585|ref|YP_003177358.1| - 0.033 13.9 0.3 0.033 13.9 0.2 2.6 3 0 0 3 3 3 0 Prokaryotic dksA/traR C4-type zinc finger zinc_ribbon_2 PF13240.1 gi|257387585|ref|YP_003177358.1| - 0.056 12.9 0.2 0.35 10.4 0.0 2.4 2 1 0 2 2 2 0 zinc-ribbon domain DNA_ligase_ZBD PF03119.11 gi|257387585|ref|YP_003177358.1| - 0.62 9.8 4.3 1.7 8.4 0.2 2.6 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Zn-ribbon_8 PF09723.5 gi|257387585|ref|YP_003177358.1| - 1 9.3 7.2 16 5.5 3.2 3.2 2 1 0 2 2 2 0 Zinc ribbon domain UPF0547 PF10571.4 gi|257387585|ref|YP_003177358.1| - 7.9 6.2 9.0 2.5 7.8 0.1 3.1 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 Peptidase_M48 PF01435.13 gi|257387586|ref|YP_003177359.1| - 1.2e-15 57.6 0.0 1.9e-15 57.0 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M48 DUF3683 PF12447.3 gi|257387587|ref|YP_003177360.1| - 0.079 12.7 0.3 0.47 10.3 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3683) DUF1628 PF07790.6 gi|257387588|ref|YP_003177361.1| - 2.4e-15 57.0 3.3 4.8e-15 56.0 2.3 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1628) DUF2892 PF11127.3 gi|257387589|ref|YP_003177362.1| - 1.2e-10 41.0 0.2 1.4e-10 40.8 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2892) TF_Zn_Ribbon PF08271.7 gi|257387589|ref|YP_003177362.1| - 0.16 11.3 0.7 0.33 10.3 0.5 1.6 1 0 0 1 1 1 0 TFIIB zinc-binding SSF PF00474.12 gi|257387590|ref|YP_003177363.1| - 1.2e-36 126.2 22.5 2.3e-34 118.7 12.7 2.1 1 1 1 2 2 2 2 Sodium:solute symporter family DUF3311 PF11755.3 gi|257387591|ref|YP_003177364.1| - 1e-13 50.6 8.7 1.2e-13 50.3 6.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3311) Glyco_hydro_42 PF02449.10 gi|257387591|ref|YP_003177364.1| - 0.055 12.5 0.6 0.058 12.4 0.4 1.1 1 0 0 1 1 1 0 Beta-galactosidase DUF4131 PF13567.1 gi|257387591|ref|YP_003177364.1| - 0.28 10.5 4.2 0.32 10.3 2.9 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) AP_endonuc_2 PF01261.19 gi|257387592|ref|YP_003177365.1| - 7.2e-26 90.8 4.9 9.7e-26 90.3 3.4 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel Amidohydro_3 PF07969.6 gi|257387592|ref|YP_003177365.1| - 0.082 12.1 4.5 0.11 11.6 3.1 1.4 1 1 0 1 1 1 0 Amidohydrolase family Methyltransf_18 PF12847.2 gi|257387592|ref|YP_003177365.1| - 0.11 13.0 2.7 2.2 8.8 1.9 2.5 1 1 0 1 1 1 0 Methyltransferase domain Toprim_4 PF13662.1 gi|257387593|ref|YP_003177366.1| - 1.2e-10 41.2 0.6 4.2e-10 39.5 0.4 2.0 1 0 0 1 1 1 1 Toprim domain Toprim PF01751.17 gi|257387593|ref|YP_003177366.1| - 0.0054 16.6 0.2 0.02 14.8 0.1 2.0 1 1 0 1 1 1 1 Toprim domain Toprim_2 PF13155.1 gi|257387593|ref|YP_003177366.1| - 0.026 14.8 0.0 0.058 13.7 0.0 1.6 1 0 0 1 1 1 0 Toprim-like Acetyltransf_1 PF00583.19 gi|257387594|ref|YP_003177367.1| - 8.3e-15 54.5 0.0 1.1e-14 54.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|257387594|ref|YP_003177367.1| - 7.6e-10 38.8 0.0 9.9e-10 38.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|257387594|ref|YP_003177367.1| - 7.9e-08 32.4 0.0 1e-07 32.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|257387594|ref|YP_003177367.1| - 1.2e-07 31.6 0.0 6e-07 29.3 0.0 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|257387594|ref|YP_003177367.1| - 0.00032 20.6 0.0 0.00046 20.0 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|257387594|ref|YP_003177367.1| - 0.00048 19.8 0.0 0.00065 19.4 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_6 PF13480.1 gi|257387594|ref|YP_003177367.1| - 0.0076 16.2 0.1 0.01 15.8 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|257387594|ref|YP_003177367.1| - 0.024 14.7 0.0 0.026 14.6 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|257387594|ref|YP_003177367.1| - 0.063 13.1 0.0 0.098 12.5 0.0 1.3 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Acetyltransf_4 PF13420.1 gi|257387594|ref|YP_003177367.1| - 0.074 12.9 0.0 0.091 12.7 0.0 1.1 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain DUF92 PF01940.11 gi|257387595|ref|YP_003177368.1| - 7.3e-62 208.4 17.6 7.3e-62 208.4 12.2 2.7 2 1 0 2 2 2 1 Integral membrane protein DUF92 VirB3 PF05101.8 gi|257387595|ref|YP_003177368.1| - 5 7.1 10.1 3.1 7.8 0.2 4.3 3 2 1 4 4 4 0 Type IV secretory pathway, VirB3-like protein Prenyltransf PF01255.14 gi|257387596|ref|YP_003177369.1| - 3.3e-26 91.7 0.0 5.1e-26 91.1 0.0 1.2 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase GRAS PF03514.9 gi|257387596|ref|YP_003177369.1| - 0.033 12.9 0.0 0.045 12.4 0.0 1.1 1 0 0 1 1 1 0 GRAS domain family Prenyltransf PF01255.14 gi|257387597|ref|YP_003177370.1| - 5.7e-70 234.9 0.0 7.4e-70 234.5 0.0 1.1 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase CSD PF00313.17 gi|257387598|ref|YP_003177371.1| - 3e-21 74.9 0.1 3.3e-21 74.8 0.1 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain S1-like PF14444.1 gi|257387598|ref|YP_003177371.1| - 0.0055 16.4 3.0 0.012 15.3 2.1 1.6 1 1 0 1 1 1 1 S1-like OB_RNB PF08206.6 gi|257387598|ref|YP_003177371.1| - 0.054 13.0 2.6 0.086 12.3 1.8 1.4 1 0 0 1 1 1 0 Ribonuclease B OB domain CusF_Ec PF11604.3 gi|257387598|ref|YP_003177371.1| - 0.11 12.3 0.0 0.13 12.0 0.0 1.3 1 0 0 1 1 1 0 Copper binding periplasmic protein CusF CSD PF00313.17 gi|257387599|ref|YP_003177372.1| - 8.4e-21 73.5 0.1 9.2e-21 73.4 0.1 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain S1-like PF14444.1 gi|257387599|ref|YP_003177372.1| - 0.0083 15.8 2.5 0.017 14.8 1.8 1.6 1 1 0 1 1 1 1 S1-like OB_RNB PF08206.6 gi|257387599|ref|YP_003177372.1| - 0.071 12.6 3.1 0.11 11.9 2.1 1.4 1 0 0 1 1 1 0 Ribonuclease B OB domain CusF_Ec PF11604.3 gi|257387599|ref|YP_003177372.1| - 0.1 12.4 0.0 0.12 12.1 0.0 1.3 1 0 0 1 1 1 0 Copper binding periplasmic protein CusF PMT_2 PF13231.1 gi|257387601|ref|YP_003177374.1| - 1.2e-09 38.2 18.8 1.3e-09 38.1 4.9 2.9 3 0 0 3 3 3 2 Dolichyl-phosphate-mannose-protein mannosyltransferase CPSase_sm_chain PF00988.17 gi|257387602|ref|YP_003177375.1| - 2.5e-35 120.8 0.0 3.7e-34 117.0 0.0 2.3 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.23 gi|257387602|ref|YP_003177375.1| - 6e-33 113.9 0.0 8.8e-33 113.3 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|257387602|ref|YP_003177375.1| - 1.5e-06 27.7 0.1 0.00042 19.8 0.1 2.3 1 1 0 1 1 1 1 Peptidase C26 Pro-kuma_activ PF09286.6 gi|257387602|ref|YP_003177375.1| - 0.022 14.8 0.0 0.038 14.0 0.0 1.3 1 0 0 1 1 1 0 Pro-kumamolisin, activation domain DJ-1_PfpI PF01965.19 gi|257387602|ref|YP_003177375.1| - 0.047 13.1 0.0 0.12 11.8 0.0 1.7 1 0 0 1 1 1 0 DJ-1/PfpI family HTH_AsnC-type PF13404.1 gi|257387603|ref|YP_003177376.1| - 4.1e-16 58.2 0.3 7e-16 57.4 0.2 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|257387603|ref|YP_003177376.1| - 1.5e-14 53.1 0.0 2.4e-14 52.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.16 gi|257387603|ref|YP_003177376.1| - 3.3e-11 42.7 0.7 5.3e-11 42.0 0.5 1.3 1 0 0 1 1 1 1 AsnC family HTH_Tnp_ISL3 PF13542.1 gi|257387603|ref|YP_003177376.1| - 6.7e-05 21.9 0.3 0.0027 16.8 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 Sigma70_r4_2 PF08281.7 gi|257387603|ref|YP_003177376.1| - 0.00012 21.4 0.0 0.00025 20.4 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 MarR_2 PF12802.2 gi|257387603|ref|YP_003177376.1| - 0.00064 19.3 0.0 0.0011 18.5 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.7 gi|257387603|ref|YP_003177376.1| - 0.00085 18.9 0.0 0.0015 18.1 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.2 gi|257387603|ref|YP_003177376.1| - 0.0017 18.0 0.0 0.0034 17.1 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.1 gi|257387603|ref|YP_003177376.1| - 0.0027 17.2 0.0 0.0047 16.5 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain Sigma70_r4 PF04545.11 gi|257387603|ref|YP_003177376.1| - 0.0031 16.7 0.1 0.0053 16.0 0.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 TrmB PF01978.14 gi|257387603|ref|YP_003177376.1| - 0.0041 16.8 0.1 0.0082 15.8 0.0 1.5 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|257387603|ref|YP_003177376.1| - 0.0046 16.5 0.0 0.0094 15.5 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.17 gi|257387603|ref|YP_003177376.1| - 0.0059 16.2 0.0 0.011 15.4 0.0 1.4 1 0 0 1 1 1 1 MarR family NapD PF03927.8 gi|257387603|ref|YP_003177376.1| - 0.0087 15.8 0.8 0.015 15.1 0.6 1.4 1 0 0 1 1 1 1 NapD protein GntR PF00392.16 gi|257387603|ref|YP_003177376.1| - 0.015 14.6 0.0 0.026 13.9 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HrcA_DNA-bdg PF03444.10 gi|257387603|ref|YP_003177376.1| - 0.016 14.6 0.0 0.028 13.8 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_Mga PF08280.6 gi|257387603|ref|YP_003177376.1| - 0.049 13.3 0.0 0.09 12.5 0.0 1.4 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain PaaX PF07848.7 gi|257387603|ref|YP_003177376.1| - 0.05 13.6 0.0 0.077 13.0 0.0 1.3 1 0 0 1 1 1 0 PaaX-like protein HTH_27 PF13463.1 gi|257387603|ref|YP_003177376.1| - 0.053 13.8 0.0 0.11 12.8 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain GerE PF00196.14 gi|257387603|ref|YP_003177376.1| - 0.057 12.7 0.0 0.13 11.5 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family DUF4191 PF13829.1 gi|257387603|ref|YP_003177376.1| - 0.062 12.4 0.3 0.27 10.3 0.2 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4191) DUF746 PF05344.6 gi|257387603|ref|YP_003177376.1| - 0.064 12.7 0.0 0.23 11.0 0.0 1.9 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) HTH_28 PF13518.1 gi|257387603|ref|YP_003177376.1| - 0.071 13.1 0.0 0.16 12.0 0.0 1.6 2 0 0 2 2 1 0 Helix-turn-helix domain Penicillinase_R PF03965.11 gi|257387603|ref|YP_003177376.1| - 0.077 13.0 0.0 0.12 12.4 0.0 1.4 1 0 0 1 1 1 0 Penicillinase repressor HTH_5 PF01022.15 gi|257387603|ref|YP_003177376.1| - 0.097 12.3 0.0 0.2 11.3 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_29 PF13551.1 gi|257387603|ref|YP_003177376.1| - 0.1 12.7 0.0 0.22 11.6 0.0 1.5 1 1 0 1 1 1 0 Winged helix-turn helix Stk19 PF10494.4 gi|257387603|ref|YP_003177376.1| - 0.12 11.7 0.1 0.12 11.7 0.0 1.2 1 0 0 1 1 1 0 Serine-threonine protein kinase 19 HTH_7 PF02796.10 gi|257387603|ref|YP_003177376.1| - 0.15 11.9 0.0 20 5.1 0.0 2.3 1 1 1 2 2 2 0 Helix-turn-helix domain of resolvase FeoC PF09012.5 gi|257387603|ref|YP_003177376.1| - 0.15 11.7 0.0 0.66 9.7 0.0 1.9 1 1 1 2 2 2 0 FeoC like transcriptional regulator Mob_synth_C PF06463.8 gi|257387604|ref|YP_003177377.1| - 2.5e-30 104.7 0.0 3.8e-30 104.2 0.0 1.3 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Radical_SAM PF04055.16 gi|257387604|ref|YP_003177377.1| - 3.8e-25 88.9 0.0 8.2e-25 87.8 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|257387604|ref|YP_003177377.1| - 3.9e-08 33.3 0.0 9.5e-08 32.0 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|257387604|ref|YP_003177377.1| - 4.1e-07 30.1 0.0 8.4e-07 29.1 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Imm49 PF15660.1 gi|257387604|ref|YP_003177377.1| - 0.0065 16.4 0.0 0.014 15.3 0.0 1.5 1 0 0 1 1 1 1 Immunity protein 49 Cytochrome_C554 PF13435.1 gi|257387604|ref|YP_003177377.1| - 0.043 13.8 0.4 4.3 7.4 0.0 2.3 2 0 0 2 2 2 0 Cytochrome c554 and c-prime Cytochrom_CIII PF02085.11 gi|257387604|ref|YP_003177377.1| - 0.13 12.4 1.7 0.6 10.2 0.2 2.1 2 0 0 2 2 2 0 Class III cytochrome C family Cytochrom_c3_2 PF14537.1 gi|257387604|ref|YP_003177377.1| - 0.13 12.5 2.3 1.3 9.4 0.2 2.2 2 0 0 2 2 2 0 Cytochrome c3 HTH_10 PF04967.7 gi|257387605|ref|YP_003177378.1| - 2e-17 62.5 0.1 3e-17 61.9 0.1 1.3 1 0 0 1 1 1 1 HTH DNA binding domain MarR_2 PF12802.2 gi|257387605|ref|YP_003177378.1| - 0.0025 17.4 0.0 0.012 15.2 0.0 2.1 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.2 gi|257387605|ref|YP_003177378.1| - 0.034 13.9 0.0 0.14 12.0 0.0 2.0 1 1 0 1 1 1 0 Helix-turn-helix domain DUF4250 PF14056.1 gi|257387605|ref|YP_003177378.1| - 0.044 13.5 0.1 0.1 12.3 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4250) zf-CDGSH PF09360.5 gi|257387606|ref|YP_003177379.1| - 2.2e-11 43.3 0.2 3.7e-11 42.6 0.1 1.4 1 0 0 1 1 1 1 Iron-binding zinc finger CDGSH type CMD PF02627.15 gi|257387607|ref|YP_003177380.1| - 1.9e-08 34.0 0.0 2.3e-08 33.7 0.0 1.1 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family SHOCT PF09851.4 gi|257387608|ref|YP_003177381.1| - 0.00055 19.3 4.9 0.0032 16.8 0.1 2.5 2 1 0 2 2 2 2 Short C-terminal domain GvpG PF05120.7 gi|257387608|ref|YP_003177381.1| - 0.85 9.4 4.4 3.2 7.6 0.3 2.1 1 1 1 2 2 2 0 Gas vesicle protein G Molybdopterin PF00384.17 gi|257387609|ref|YP_003177382.1| - 2.3e-28 99.0 0.0 4e-22 78.5 0.0 2.2 2 0 0 2 2 2 2 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|257387609|ref|YP_003177382.1| - 5.8e-13 48.6 0.0 1.3e-12 47.4 0.0 1.6 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|257387609|ref|YP_003177382.1| - 2.8e-08 33.4 0.2 5.4e-08 32.5 0.1 1.5 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain TAT_signal PF10518.4 gi|257387609|ref|YP_003177382.1| - 0.00052 19.8 3.7 0.0011 18.7 2.6 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Fer4_11 PF13247.1 gi|257387610|ref|YP_003177383.1| - 2.5e-23 81.8 17.9 4.3e-17 61.8 3.4 3.1 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|257387610|ref|YP_003177383.1| - 9.9e-16 57.7 18.1 1.4e-10 41.2 1.4 2.9 2 2 0 2 2 2 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|257387610|ref|YP_003177383.1| - 3e-14 53.1 28.1 6e-07 29.7 5.8 3.9 2 2 2 4 4 4 4 4Fe-4S dicluster domain Fer4 PF00037.22 gi|257387610|ref|YP_003177383.1| - 1.4e-11 43.4 30.1 7.2e-05 22.2 2.3 5.2 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_6 PF12837.2 gi|257387610|ref|YP_003177383.1| - 6.1e-10 38.5 33.8 2e-05 24.2 1.5 4.9 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_2 PF12797.2 gi|257387610|ref|YP_003177383.1| - 4.1e-09 35.8 10.6 1.3e-05 24.8 1.0 4.9 5 0 0 5 5 5 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|257387610|ref|YP_003177383.1| - 9.6e-09 34.9 29.6 5.6e-05 22.8 8.3 3.7 1 1 3 4 4 4 3 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|257387610|ref|YP_003177383.1| - 1.5e-06 28.3 38.5 0.11 13.0 1.1 4.4 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_4 PF12800.2 gi|257387610|ref|YP_003177383.1| - 2.5e-06 27.3 32.7 7.6e-05 22.7 1.4 4.7 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_8 PF13183.1 gi|257387610|ref|YP_003177383.1| - 4.2e-06 26.6 29.9 0.0094 15.9 5.7 3.8 2 2 1 3 3 3 2 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|257387610|ref|YP_003177383.1| - 5.2e-05 23.0 24.9 0.025 14.4 5.3 3.8 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|257387610|ref|YP_003177383.1| - 5.2e-05 23.8 23.4 0.41 11.4 0.2 5.0 4 1 0 4 4 4 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|257387610|ref|YP_003177383.1| - 0.00053 20.2 31.2 0.018 15.4 1.6 4.0 2 2 1 4 4 4 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|257387610|ref|YP_003177383.1| - 0.27 11.8 28.0 2.3 8.8 1.4 4.8 3 2 2 5 5 5 0 4Fe-4S single cluster domain Fer4_20 PF14691.1 gi|257387610|ref|YP_003177383.1| - 0.31 10.6 25.7 0.45 10.1 0.3 4.1 2 1 2 4 4 4 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_18 PF13746.1 gi|257387610|ref|YP_003177383.1| - 7.6 7.0 30.3 0.31 11.4 0.8 4.4 3 2 2 5 5 5 0 4Fe-4S dicluster domain NrfD PF03916.9 gi|257387611|ref|YP_003177384.1| - 7.1e-18 65.0 17.6 7.1e-18 65.0 12.2 1.8 2 1 0 2 2 2 1 Polysulphide reductase, NrfD Nitrate_red_del PF02613.10 gi|257387612|ref|YP_003177385.1| - 6.5e-20 71.3 0.3 9.4e-20 70.8 0.2 1.2 1 0 0 1 1 1 1 Nitrate reductase delta subunit ParA PF10609.4 gi|257387614|ref|YP_003177387.1| - 8.5e-32 108.8 0.2 1.4e-31 108.1 0.1 1.3 1 0 0 1 1 1 1 ParA/MinD ATPase like CbiA PF01656.18 gi|257387614|ref|YP_003177387.1| - 3.4e-19 69.0 0.0 4.9e-19 68.4 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain DUF59 PF01883.14 gi|257387614|ref|YP_003177387.1| - 2.1e-13 50.0 0.4 6.3e-13 48.5 0.3 1.8 1 0 0 1 1 1 1 Domain of unknown function DUF59 AAA_31 PF13614.1 gi|257387614|ref|YP_003177387.1| - 2.7e-10 40.3 0.0 1.3e-09 38.1 0.0 2.0 1 1 0 1 1 1 1 AAA domain MipZ PF09140.6 gi|257387614|ref|YP_003177387.1| - 6.8e-07 28.6 0.0 1.3e-06 27.6 0.0 1.5 1 1 0 1 1 1 1 ATPase MipZ VirC1 PF07015.6 gi|257387614|ref|YP_003177387.1| - 9.1e-05 21.6 0.0 0.00015 20.9 0.0 1.3 1 0 0 1 1 1 1 VirC1 protein Fer4_NifH PF00142.13 gi|257387614|ref|YP_003177387.1| - 0.00012 21.3 0.0 0.0029 16.8 0.1 2.2 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.10 gi|257387614|ref|YP_003177387.1| - 0.00038 19.6 2.1 0.00099 18.2 0.6 1.9 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_25 PF13481.1 gi|257387614|ref|YP_003177387.1| - 0.003 16.9 0.0 0.0084 15.5 0.0 1.7 1 0 0 1 1 1 1 AAA domain TF_Zn_Ribbon PF08271.7 gi|257387614|ref|YP_003177387.1| - 0.0094 15.2 0.2 0.019 14.2 0.1 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding AAA_26 PF13500.1 gi|257387614|ref|YP_003177387.1| - 0.014 15.0 1.1 2.1 7.8 0.1 2.4 3 0 0 3 3 3 0 AAA domain APS_kinase PF01583.15 gi|257387614|ref|YP_003177387.1| - 0.05 13.2 0.0 0.091 12.4 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase DUF258 PF03193.11 gi|257387614|ref|YP_003177387.1| - 0.055 12.6 0.0 0.094 11.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|257387614|ref|YP_003177387.1| - 0.15 12.8 0.0 0.39 11.5 0.0 1.8 2 0 0 2 2 1 0 AAA domain NUDIX PF00293.23 gi|257387616|ref|YP_003177389.1| - 1.3e-13 50.7 0.7 1.7e-13 50.3 0.5 1.2 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.1 gi|257387616|ref|YP_003177389.1| - 0.00057 19.2 0.6 0.0023 17.3 0.4 1.9 1 1 0 1 1 1 1 NUDIX domain GIDE PF12483.3 gi|257387617|ref|YP_003177390.1| - 0.0002 20.7 0.0 0.54 9.5 0.0 2.5 1 1 1 2 2 2 2 E3 Ubiquitin ligase HATPase_c PF02518.21 gi|257387618|ref|YP_003177391.1| - 1.2e-14 53.9 0.1 2.3e-14 53.0 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|257387618|ref|YP_003177391.1| - 3.3e-09 36.7 0.7 1.1e-08 35.1 0.5 1.9 1 1 0 1 1 1 1 PAS fold HATPase_c_2 PF13581.1 gi|257387618|ref|YP_003177391.1| - 1.6e-08 34.4 0.7 4.3e-08 32.9 0.5 1.8 1 1 1 2 2 2 1 Histidine kinase-like ATPase domain PAS_9 PF13426.1 gi|257387618|ref|YP_003177391.1| - 1.9e-07 31.3 0.0 1.1e-06 28.9 0.0 2.3 2 1 0 2 2 2 1 PAS domain PAS PF00989.19 gi|257387618|ref|YP_003177391.1| - 5.3e-07 29.4 0.0 1.3e-06 28.1 0.0 1.7 1 0 0 1 1 1 1 PAS fold HATPase_c_3 PF13589.1 gi|257387618|ref|YP_003177391.1| - 5.4e-06 26.0 0.0 8.8e-06 25.4 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|257387618|ref|YP_003177391.1| - 0.00015 21.6 0.3 0.00037 20.4 0.2 1.7 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_8 PF13188.1 gi|257387618|ref|YP_003177391.1| - 0.0013 18.5 0.1 0.0049 16.6 0.1 2.0 1 0 0 1 1 1 1 PAS domain SPOB_a PF14689.1 gi|257387618|ref|YP_003177391.1| - 0.088 12.3 0.3 0.17 11.4 0.2 1.4 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain RsmJ PF04378.8 gi|257387620|ref|YP_003177393.1| - 0.066 12.2 0.0 0.14 11.1 0.0 1.5 1 1 0 1 1 1 0 Ribosomal RNA small subunit methyltransferase D, RsmJ DDE_Tnp_1 PF01609.16 gi|257387621|ref|YP_003177394.1| - 5e-15 55.6 3.9 4.6e-14 52.4 2.7 2.0 1 1 0 1 1 1 1 Transposase DDE domain DUF3007 PF11460.3 gi|257387622|ref|YP_003177395.1| - 0.088 12.8 0.0 0.12 12.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3007) Radical_SAM PF04055.16 gi|257387623|ref|YP_003177396.1| - 5.1e-11 43.0 0.1 8.1e-10 39.1 0.0 2.3 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|257387623|ref|YP_003177396.1| - 0.034 14.2 0.1 0.068 13.2 0.1 1.5 1 0 0 1 1 1 0 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|257387623|ref|YP_003177396.1| - 0.079 12.9 0.2 0.23 11.4 0.0 1.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain vATP-synt_AC39 PF01992.11 gi|257387623|ref|YP_003177396.1| - 0.12 11.4 0.0 0.17 10.9 0.0 1.1 1 0 0 1 1 1 0 ATP synthase (C/AC39) subunit Radical_SAM PF04055.16 gi|257387624|ref|YP_003177397.1| - 1.9e-10 41.1 0.0 1.5e-09 38.2 0.0 2.4 2 2 0 2 2 2 1 Radical SAM superfamily Zn_Tnp_IS1595 PF12760.2 gi|257387624|ref|YP_003177397.1| - 0.052 13.3 0.6 0.13 12.0 0.4 1.7 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Prenyltrans PF00432.16 gi|257387624|ref|YP_003177397.1| - 0.11 12.0 0.1 1.2 8.7 0.0 2.3 2 0 0 2 2 2 0 Prenyltransferase and squalene oxidase repeat Fer4_12 PF13353.1 gi|257387624|ref|YP_003177397.1| - 0.12 12.5 3.3 0.21 11.7 0.1 2.6 3 0 0 3 3 3 0 4Fe-4S single cluster domain zf-C3HC4_2 PF13923.1 gi|257387624|ref|YP_003177397.1| - 3.6 7.6 8.4 0.88 9.6 0.5 2.8 2 1 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) Plasmid_stabil PF05016.9 gi|257387625|ref|YP_003177398.1| - 0.01 16.2 0.0 0.017 15.4 0.0 1.4 1 1 0 1 1 1 0 Plasmid stabilisation system protein RHH_1 PF01402.16 gi|257387626|ref|YP_003177399.1| - 5.2e-06 26.1 0.0 9e-06 25.3 0.0 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family Tash_PEST PF07708.6 gi|257387627|ref|YP_003177400.1| - 0.13 12.2 0.1 0.25 11.3 0.1 1.5 1 0 0 1 1 1 0 Tash protein PEST motif FxsA PF04186.8 gi|257387628|ref|YP_003177401.1| - 4e-27 94.2 8.3 5.6e-27 93.7 5.7 1.1 1 0 0 1 1 1 1 FxsA cytoplasmic membrane protein Thioredox_DsbH PF03190.10 gi|257387629|ref|YP_003177402.1| - 5.5e-27 94.4 0.0 9.7e-27 93.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.1 gi|257387629|ref|YP_003177402.1| - 2.8e-13 49.6 0.0 1.9e-12 46.9 0.0 2.2 2 0 0 2 2 2 1 Thioredoxin-like Thioredoxin_2 PF13098.1 gi|257387629|ref|YP_003177402.1| - 0.00013 22.1 0.0 0.00057 20.0 0.0 2.0 1 1 0 1 1 1 1 Thioredoxin-like domain ApbE PF02424.10 gi|257387629|ref|YP_003177402.1| - 0.002 17.4 1.0 0.0036 16.6 0.7 1.4 1 0 0 1 1 1 1 ApbE family Thioredoxin PF00085.15 gi|257387629|ref|YP_003177402.1| - 0.0041 16.7 0.0 0.0088 15.7 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin GlcNAc_2-epim PF07221.6 gi|257387629|ref|YP_003177402.1| - 0.0048 15.9 4.6 0.015 14.3 1.4 2.6 2 1 0 2 2 2 1 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) Glyco_hydro_88 PF07470.8 gi|257387629|ref|YP_003177402.1| - 0.013 14.5 1.4 2.3 7.1 0.0 2.9 1 1 0 2 2 2 0 Glycosyl Hydrolase Family 88 Glyco_hydro_76 PF03663.9 gi|257387629|ref|YP_003177402.1| - 0.069 12.5 1.6 0.39 10.0 1.1 2.2 2 2 1 3 3 3 0 Glycosyl hydrolase family 76 TrmB PF01978.14 gi|257387630|ref|YP_003177403.1| - 2.1e-18 65.7 0.0 4.5e-18 64.7 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB PadR PF03551.9 gi|257387630|ref|YP_003177403.1| - 0.0056 16.4 0.0 0.015 15.0 0.0 1.7 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family E2F_TDP PF02319.15 gi|257387630|ref|YP_003177403.1| - 0.0061 16.0 0.1 0.14 11.7 0.0 2.6 3 0 0 3 3 3 1 E2F/DP family winged-helix DNA-binding domain Val_tRNA-synt_C PF10458.4 gi|257387630|ref|YP_003177403.1| - 0.053 13.6 1.0 0.48 10.5 0.0 2.4 2 0 0 2 2 2 0 Valyl tRNA synthetase tRNA binding arm Prefoldin PF02996.12 gi|257387630|ref|YP_003177403.1| - 0.34 10.5 2.3 0.8 9.3 0.4 2.3 3 0 0 3 3 3 0 Prefoldin subunit GCHY-1 PF02649.9 gi|257387631|ref|YP_003177404.1| - 6.6e-86 287.9 1.1 7.4e-86 287.8 0.8 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 DUF2868 PF11067.3 gi|257387631|ref|YP_003177404.1| - 0.19 10.8 0.1 0.25 10.4 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2868) HalX PF08663.5 gi|257387632|ref|YP_003177405.1| - 1.5e-18 66.5 7.0 1.5e-18 66.5 4.9 1.9 2 0 0 2 2 2 1 HalX domain Response_reg PF00072.19 gi|257387632|ref|YP_003177405.1| - 6.7e-18 64.7 1.4 6.7e-18 64.7 1.0 1.7 2 0 0 2 2 2 1 Response regulator receiver domain DUF837 PF05769.6 gi|257387632|ref|YP_003177405.1| - 0.012 15.1 0.3 0.022 14.3 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF837) Uds1 PF15456.1 gi|257387632|ref|YP_003177405.1| - 0.027 14.4 1.2 0.045 13.7 0.8 1.2 1 0 0 1 1 1 0 Up-regulated During Septation PP_kinase_N PF13089.1 gi|257387632|ref|YP_003177405.1| - 0.033 14.2 0.1 0.053 13.6 0.1 1.3 1 0 0 1 1 1 0 Polyphosphate kinase N-terminal domain YcaO PF02624.11 gi|257387632|ref|YP_003177405.1| - 0.036 13.5 1.0 0.064 12.7 0.4 1.5 1 1 0 1 1 1 0 YcaO-like family DinB_2 PF12867.2 gi|257387632|ref|YP_003177405.1| - 0.076 13.3 0.5 0.12 12.6 0.3 1.7 1 1 0 1 1 1 0 DinB superfamily MutS_III PF05192.13 gi|257387632|ref|YP_003177405.1| - 0.12 12.1 1.1 0.14 11.9 0.8 1.3 1 1 0 1 1 1 0 MutS domain III HTH_AsnC-type PF13404.1 gi|257387633|ref|YP_003177406.1| - 1.8e-07 30.6 0.7 0.017 14.6 0.0 2.8 2 0 0 2 2 2 2 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|257387633|ref|YP_003177406.1| - 0.021 14.2 0.0 1.2 8.6 0.0 2.5 2 1 0 2 2 2 0 Winged helix-turn-helix DNA-binding Glycos_transf_3 PF00591.16 gi|257387634|ref|YP_003177407.1| - 1.1e-27 97.0 0.0 1.9e-27 96.2 0.0 1.3 2 0 0 2 2 2 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.12 gi|257387634|ref|YP_003177407.1| - 3.2e-17 61.8 0.0 6.8e-16 57.6 0.0 2.5 2 0 0 2 2 2 1 Glycosyl transferase family, helical bundle domain Tol_Tol_Ttg2 PF05494.7 gi|257387634|ref|YP_003177407.1| - 0.00089 18.8 0.0 0.0017 17.9 0.0 1.4 1 0 0 1 1 1 1 Toluene tolerance, Ttg2 DUF2613 PF11021.3 gi|257387634|ref|YP_003177407.1| - 0.046 13.4 2.6 0.05 13.3 0.5 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2613) Abhydrolase_6 PF12697.2 gi|257387635|ref|YP_003177408.1| - 1.2e-41 143.0 7.5 1.5e-41 142.7 5.2 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|257387635|ref|YP_003177408.1| - 1.1e-26 93.8 0.0 2.9e-26 92.4 0.0 1.6 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|257387635|ref|YP_003177408.1| - 5.5e-17 61.8 0.0 1.4e-16 60.5 0.0 1.6 1 1 0 1 1 1 1 Alpha/beta hydrolase family DLH PF01738.13 gi|257387635|ref|YP_003177408.1| - 4e-06 26.2 0.0 0.06 12.6 0.0 2.7 2 1 0 2 2 2 2 Dienelactone hydrolase family Hydrolase_4 PF12146.3 gi|257387635|ref|YP_003177408.1| - 1.1e-05 25.1 0.0 2.8e-05 23.8 0.0 1.7 1 1 0 1 1 1 1 Putative lysophospholipase Thioesterase PF00975.15 gi|257387635|ref|YP_003177408.1| - 0.018 15.2 0.0 0.038 14.2 0.0 1.5 1 1 0 1 1 1 0 Thioesterase domain ArfGap PF01412.13 gi|257387636|ref|YP_003177409.1| - 0.039 13.7 0.8 0.072 12.8 0.6 1.4 1 0 0 1 1 1 0 Putative GTPase activating protein for Arf Zn_Tnp_IS1595 PF12760.2 gi|257387636|ref|YP_003177409.1| - 0.12 12.1 0.8 0.4 10.5 0.5 1.9 1 0 0 1 1 1 0 Transposase zinc-ribbon domain HypA PF01155.14 gi|257387636|ref|YP_003177409.1| - 0.12 12.0 0.1 0.25 11.0 0.1 1.5 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family TF_Zn_Ribbon PF08271.7 gi|257387636|ref|YP_003177409.1| - 0.28 10.5 3.0 0.2 10.9 0.5 1.7 1 1 1 2 2 2 0 TFIIB zinc-binding DNA_ligase_ZBD PF03119.11 gi|257387636|ref|YP_003177409.1| - 0.63 9.7 4.5 2 8.1 0.3 2.5 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Methyltransf_11 PF08241.7 gi|257387637|ref|YP_003177410.1| - 5.1e-15 55.7 0.0 7.9e-15 55.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|257387637|ref|YP_003177410.1| - 2.4e-11 43.8 0.0 3.8e-11 43.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|257387637|ref|YP_003177410.1| - 1.5e-07 31.1 0.0 2e-07 30.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|257387637|ref|YP_003177410.1| - 1.4e-06 28.1 0.0 1.8e-06 27.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|257387637|ref|YP_003177410.1| - 2.7e-06 27.4 0.4 5.2e-06 26.4 0.3 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|257387637|ref|YP_003177410.1| - 3.3e-06 27.4 0.0 5.4e-06 26.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|257387637|ref|YP_003177410.1| - 1.3e-05 25.7 0.0 2.1e-05 25.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|257387637|ref|YP_003177410.1| - 0.0002 20.5 0.0 0.00037 19.6 0.0 1.4 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_8 PF05148.10 gi|257387637|ref|YP_003177410.1| - 0.02 14.5 0.0 0.029 14.0 0.0 1.2 1 0 0 1 1 1 0 Hypothetical methyltransferase MetW PF07021.7 gi|257387637|ref|YP_003177410.1| - 0.1 11.9 0.0 0.13 11.5 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW TrkA_N PF02254.13 gi|257387638|ref|YP_003177411.1| - 2.6e-27 95.1 1.9 4.1e-27 94.4 1.3 1.3 1 0 0 1 1 1 1 TrkA-N domain NAD_binding_7 PF13241.1 gi|257387638|ref|YP_003177411.1| - 3.9e-05 23.8 0.5 7.7e-05 22.8 0.3 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding 3HCDH_N PF02737.13 gi|257387638|ref|YP_003177411.1| - 0.00089 18.9 0.7 0.002 17.8 0.5 1.7 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DAO PF01266.19 gi|257387638|ref|YP_003177411.1| - 0.01 14.7 0.2 0.016 14.1 0.1 1.4 1 0 0 1 1 1 0 FAD dependent oxidoreductase IlvN PF07991.7 gi|257387638|ref|YP_003177411.1| - 0.011 15.1 0.1 0.02 14.2 0.0 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain ApbA PF02558.11 gi|257387638|ref|YP_003177411.1| - 0.014 14.8 0.1 0.022 14.2 0.1 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NAD_binding_10 PF13460.1 gi|257387638|ref|YP_003177411.1| - 0.015 15.2 3.0 0.031 14.2 2.1 1.6 1 0 0 1 1 1 0 NADH(P)-binding NAD_binding_2 PF03446.10 gi|257387638|ref|YP_003177411.1| - 0.017 14.9 0.2 0.025 14.4 0.1 1.3 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase PALP PF00291.20 gi|257387638|ref|YP_003177411.1| - 0.066 12.4 1.6 0.11 11.7 1.0 1.4 1 1 0 1 1 1 0 Pyridoxal-phosphate dependent enzyme FAD_binding_2 PF00890.19 gi|257387638|ref|YP_003177411.1| - 0.073 11.9 2.3 0.1 11.4 1.6 1.2 1 0 0 1 1 1 0 FAD binding domain Pyr_redox PF00070.22 gi|257387638|ref|YP_003177411.1| - 0.078 13.3 1.4 0.51 10.7 0.1 2.7 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase Pro_isomerase PF00160.16 gi|257387639|ref|YP_003177412.1| - 2e-47 161.3 0.0 2.2e-47 161.1 0.0 1.0 1 0 0 1 1 1 1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD MFS_1 PF07690.11 gi|257387640|ref|YP_003177413.1| - 1.1e-19 70.3 38.4 1.1e-19 70.3 26.6 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Nuc_H_symport PF03825.11 gi|257387640|ref|YP_003177413.1| - 2e-10 39.9 20.5 2.9e-10 39.4 14.2 1.1 1 0 0 1 1 1 1 Nucleoside H+ symporter MFS_1_like PF12832.2 gi|257387640|ref|YP_003177413.1| - 1.2e-08 34.5 0.5 1.2e-08 34.5 0.4 3.2 3 0 0 3 3 3 1 MFS_1 like family LacY_symp PF01306.14 gi|257387640|ref|YP_003177413.1| - 6.7e-07 28.1 18.2 5.3e-06 25.2 12.6 2.2 1 1 0 1 1 1 1 LacY proton/sugar symporter Fer4_15 PF13459.1 gi|257387641|ref|YP_003177414.1| - 0.00037 20.9 1.2 0.00055 20.4 0.5 1.6 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|257387641|ref|YP_003177414.1| - 0.025 14.9 0.3 0.055 13.8 0.2 1.5 1 0 0 1 1 1 0 4Fe-4S single cluster domain Fer4_6 PF12837.2 gi|257387641|ref|YP_003177414.1| - 0.065 13.1 1.0 0.54 10.2 0.1 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_19 PF06902.6 gi|257387641|ref|YP_003177414.1| - 0.1 12.4 0.4 0.24 11.2 0.3 1.7 1 1 0 1 1 1 0 Divergent 4Fe-4S mono-cluster ABC_tran PF00005.22 gi|257387642|ref|YP_003177415.1| - 3.7e-32 111.4 0.0 5.9e-32 110.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|257387642|ref|YP_003177415.1| - 8.7e-18 64.4 0.2 1.7e-17 63.5 0.2 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|257387642|ref|YP_003177415.1| - 7.6e-05 22.8 0.0 0.057 13.3 0.0 2.2 1 1 1 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|257387642|ref|YP_003177415.1| - 0.00016 21.7 0.0 0.00034 20.6 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.14 gi|257387642|ref|YP_003177415.1| - 0.00057 19.1 0.0 0.00084 18.6 0.0 1.2 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain RNA_helicase PF00910.17 gi|257387642|ref|YP_003177415.1| - 0.0034 17.5 0.0 0.006 16.7 0.0 1.4 1 0 0 1 1 1 1 RNA helicase ATP-synt_ab PF00006.20 gi|257387642|ref|YP_003177415.1| - 0.0041 16.6 0.0 0.0044 16.5 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_22 PF13401.1 gi|257387642|ref|YP_003177415.1| - 0.0045 17.1 0.1 0.036 14.2 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|257387642|ref|YP_003177415.1| - 0.0048 17.1 0.0 0.011 15.9 0.0 1.6 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.1 gi|257387642|ref|YP_003177415.1| - 0.0048 16.3 0.0 0.009 15.5 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_5 PF07728.9 gi|257387642|ref|YP_003177415.1| - 0.011 15.5 0.0 0.02 14.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) DUF258 PF03193.11 gi|257387642|ref|YP_003177415.1| - 0.013 14.7 0.0 0.021 14.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 NACHT PF05729.7 gi|257387642|ref|YP_003177415.1| - 0.013 15.1 0.0 0.026 14.1 0.0 1.5 1 0 0 1 1 1 0 NACHT domain PRK PF00485.13 gi|257387642|ref|YP_003177415.1| - 0.014 14.9 0.0 0.025 14.1 0.0 1.4 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_25 PF13481.1 gi|257387642|ref|YP_003177415.1| - 0.059 12.7 0.0 0.21 10.9 0.0 1.9 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.17 gi|257387642|ref|YP_003177415.1| - 0.062 12.1 0.0 0.1 11.4 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_33 PF13671.1 gi|257387642|ref|YP_003177415.1| - 0.078 12.8 0.0 0.62 9.9 0.0 2.2 2 0 0 2 2 2 0 AAA domain Sigma54_activat PF00158.21 gi|257387642|ref|YP_003177415.1| - 0.11 11.9 0.0 0.41 10.1 0.0 1.8 2 0 0 2 2 2 0 Sigma-54 interaction domain Mg_chelatase PF01078.16 gi|257387642|ref|YP_003177415.1| - 0.16 11.0 0.0 0.35 10.0 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI ABC_tran PF00005.22 gi|257387643|ref|YP_003177416.1| - 1.6e-24 86.7 0.0 2.8e-24 85.9 0.0 1.4 1 1 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|257387643|ref|YP_003177416.1| - 3.8e-19 68.7 0.6 6.9e-19 67.9 0.4 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|257387643|ref|YP_003177416.1| - 2.7e-05 24.2 0.0 0.00019 21.4 0.0 1.9 1 1 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|257387643|ref|YP_003177416.1| - 0.025 14.5 0.2 0.053 13.5 0.1 1.8 1 1 0 1 1 1 0 AAA ATPase domain AAA_25 PF13481.1 gi|257387643|ref|YP_003177416.1| - 0.068 12.5 0.2 0.38 10.1 0.0 2.2 2 1 0 2 2 2 0 AAA domain AAA_22 PF13401.1 gi|257387643|ref|YP_003177416.1| - 0.082 13.0 0.0 0.78 9.8 0.0 2.3 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|257387643|ref|YP_003177416.1| - 0.16 11.5 0.0 0.32 10.5 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain BPD_transp_1 PF00528.17 gi|257387644|ref|YP_003177417.1| - 1.9e-30 105.7 8.6 1.9e-30 105.7 6.0 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|257387644|ref|YP_003177417.1| - 0.15 11.4 0.0 0.15 11.4 0.0 3.1 3 0 0 3 3 3 0 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.17 gi|257387645|ref|YP_003177418.1| - 1.3e-44 151.9 9.2 1.3e-44 151.9 6.4 1.7 3 0 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.17 gi|257387646|ref|YP_003177419.1| - 8.1e-61 205.9 6.4 1.2e-60 205.3 4.4 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.4 gi|257387646|ref|YP_003177419.1| - 0.26 11.3 1.2 0.53 10.4 0.8 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF457 PF04307.9 gi|257387647|ref|YP_003177420.1| - 0.023 14.0 8.8 0.035 13.4 6.1 1.4 1 1 0 1 1 1 0 Predicted membrane-bound metal-dependent hydrolase (DUF457) ER-remodelling PF14755.1 gi|257387648|ref|YP_003177421.1| - 0.1 12.6 0.1 0.25 11.4 0.0 1.7 3 0 0 3 3 3 0 Intracellular membrane remodeller AsnC_trans_reg PF01037.16 gi|257387649|ref|YP_003177422.1| - 1e-14 53.9 0.5 1.2e-14 53.7 0.4 1.0 1 0 0 1 1 1 1 AsnC family TrkA_N PF02254.13 gi|257387650|ref|YP_003177423.1| - 1.1e-24 86.7 0.3 1.6e-24 86.1 0.2 1.3 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.16 gi|257387650|ref|YP_003177423.1| - 8.5e-11 41.2 0.2 2.4e-10 39.8 0.0 1.8 2 0 0 2 2 2 1 TrkA-C domain UDPG_MGDP_dh_N PF03721.9 gi|257387650|ref|YP_003177423.1| - 2.7e-06 26.8 0.0 5.7e-06 25.8 0.0 1.5 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Pyr_redox_2 PF07992.9 gi|257387650|ref|YP_003177423.1| - 6.2e-05 22.9 0.1 0.001 19.0 0.0 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|257387650|ref|YP_003177423.1| - 0.00033 19.8 0.1 0.00042 19.4 0.1 1.1 1 0 0 1 1 1 1 FAD binding domain 3HCDH_N PF02737.13 gi|257387650|ref|YP_003177423.1| - 0.00033 20.3 0.1 0.00047 19.8 0.1 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.11 gi|257387650|ref|YP_003177423.1| - 0.00035 20.0 0.0 0.0005 19.5 0.0 1.2 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA DAO PF01266.19 gi|257387650|ref|YP_003177423.1| - 0.0004 19.3 0.1 0.00068 18.6 0.1 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_7 PF13241.1 gi|257387650|ref|YP_003177423.1| - 0.00045 20.4 0.1 0.00071 19.7 0.1 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding NAD_binding_10 PF13460.1 gi|257387650|ref|YP_003177423.1| - 0.0018 18.2 0.5 0.003 17.6 0.4 1.4 1 0 0 1 1 1 1 NADH(P)-binding FAD_binding_2 PF00890.19 gi|257387650|ref|YP_003177423.1| - 0.0034 16.2 0.1 0.0035 16.2 0.0 1.1 1 0 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.22 gi|257387650|ref|YP_003177423.1| - 0.0045 17.3 0.2 0.0088 16.4 0.1 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase AdoHcyase_NAD PF00670.16 gi|257387650|ref|YP_003177423.1| - 0.012 15.4 0.1 0.033 14.0 0.1 1.7 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NAD_binding_8 PF13450.1 gi|257387650|ref|YP_003177423.1| - 0.013 15.4 0.2 0.038 14.0 0.1 1.8 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain AlaDh_PNT_C PF01262.16 gi|257387650|ref|YP_003177423.1| - 0.014 14.9 0.1 0.022 14.3 0.1 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain IlvN PF07991.7 gi|257387650|ref|YP_003177423.1| - 0.025 13.9 0.0 0.039 13.3 0.0 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain NAD_Gly3P_dh_N PF01210.18 gi|257387650|ref|YP_003177423.1| - 0.029 14.1 0.0 0.074 12.7 0.0 1.7 2 0 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2-Hacid_dh_C PF02826.14 gi|257387650|ref|YP_003177423.1| - 0.03 13.4 0.0 0.049 12.7 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CPSase_L_chain PF00289.17 gi|257387650|ref|YP_003177423.1| - 0.031 14.3 0.0 0.055 13.5 0.0 1.4 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, N-terminal domain adh_short PF00106.20 gi|257387650|ref|YP_003177423.1| - 0.034 14.0 0.6 0.057 13.3 0.4 1.3 1 0 0 1 1 1 0 short chain dehydrogenase XdhC_C PF13478.1 gi|257387650|ref|YP_003177423.1| - 0.036 14.3 0.1 0.053 13.8 0.0 1.3 1 0 0 1 1 1 0 XdhC Rossmann domain Thi4 PF01946.12 gi|257387650|ref|YP_003177423.1| - 0.085 11.9 0.0 0.13 11.3 0.0 1.3 1 0 0 1 1 1 0 Thi4 family NAD_binding_2 PF03446.10 gi|257387650|ref|YP_003177423.1| - 0.09 12.6 0.0 0.15 11.8 0.0 1.4 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Arginase PF00491.16 gi|257387651|ref|YP_003177424.1| - 9.3e-52 176.0 2.2 1.1e-51 175.7 1.5 1.1 1 0 0 1 1 1 1 Arginase family IPPT PF01715.12 gi|257387651|ref|YP_003177424.1| - 0.16 10.9 0.0 0.25 10.3 0.0 1.2 1 0 0 1 1 1 0 IPP transferase eIF-5a PF01287.15 gi|257387652|ref|YP_003177425.1| - 1.6e-06 27.9 1.0 2.6e-06 27.2 0.7 1.5 1 0 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold EFP_N PF08207.7 gi|257387652|ref|YP_003177425.1| - 0.069 13.0 0.0 0.15 11.9 0.0 1.6 2 0 0 2 2 2 0 Elongation factor P (EF-P) KOW-like domain DUF1206 PF06724.6 gi|257387653|ref|YP_003177426.1| - 3.2 7.5 5.9 45 3.8 4.1 2.0 1 1 0 1 1 1 0 Domain of Unknown Function (DUF1206) ABC1 PF03109.11 gi|257387654|ref|YP_003177427.1| - 6e-27 93.9 0.0 1.3e-26 92.8 0.0 1.5 1 0 0 1 1 1 1 ABC1 family APH PF01636.18 gi|257387654|ref|YP_003177427.1| - 0.00085 19.1 0.4 0.011 15.4 0.1 2.8 1 1 1 2 2 2 1 Phosphotransferase enzyme family Pkinase PF00069.20 gi|257387654|ref|YP_003177427.1| - 0.01 14.9 0.0 0.025 13.7 0.0 1.5 2 0 0 2 2 2 0 Protein kinase domain WaaY PF06176.6 gi|257387654|ref|YP_003177427.1| - 0.076 12.2 0.0 0.12 11.5 0.0 1.3 1 0 0 1 1 1 0 Lipopolysaccharide core biosynthesis protein (WaaY) HSP20 PF00011.16 gi|257387655|ref|YP_003177428.1| - 5.3e-09 35.8 0.0 6e-09 35.6 0.0 1.0 1 0 0 1 1 1 1 Hsp20/alpha crystallin family GvpH PF05455.6 gi|257387655|ref|YP_003177428.1| - 0.0019 17.8 0.8 0.003 17.1 0.6 1.4 1 0 0 1 1 1 1 GvpH MoCF_biosynth PF00994.19 gi|257387656|ref|YP_003177429.1| - 1.4e-13 50.4 0.2 2.5e-13 49.6 0.1 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|257387656|ref|YP_003177429.1| - 1e-05 25.3 0.0 2.8e-05 23.9 0.0 1.8 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) MoeA_N PF03453.12 gi|257387656|ref|YP_003177429.1| - 0.00051 19.4 2.2 0.00071 18.9 0.3 2.3 2 1 1 3 3 3 1 MoeA N-terminal region (domain I and II) HAD_2 PF13419.1 gi|257387657|ref|YP_003177430.1| - 2.1e-25 89.9 0.1 2.4e-25 89.7 0.0 1.0 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|257387657|ref|YP_003177430.1| - 0.00027 21.4 0.0 0.008 16.6 0.0 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|257387657|ref|YP_003177430.1| - 0.00099 18.7 0.1 0.0024 17.5 0.1 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.2 gi|257387657|ref|YP_003177430.1| - 0.031 14.4 0.1 0.046 13.8 0.0 1.3 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase DUF4131 PF13567.1 gi|257387658|ref|YP_003177431.1| - 0.39 10.0 10.6 0.31 10.4 0.1 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) Bax1-I PF01027.15 gi|257387658|ref|YP_003177431.1| - 0.69 9.4 16.9 0.31 10.6 10.0 1.5 1 1 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 Pterin_4a PF01329.14 gi|257387659|ref|YP_003177432.1| - 1e-23 82.9 0.0 1.1e-23 82.8 0.0 1.0 1 0 0 1 1 1 1 Pterin 4 alpha carbinolamine dehydratase IF-2 PF11987.3 gi|257387659|ref|YP_003177432.1| - 0.027 14.3 0.0 0.034 14.0 0.0 1.2 1 0 0 1 1 1 0 Translation-initiation factor 2 GlutR_N PF05201.10 gi|257387660|ref|YP_003177433.1| - 1.1e-35 122.4 0.9 2.8e-35 121.1 0.6 1.7 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, N-terminal domain Shikimate_DH PF01488.15 gi|257387660|ref|YP_003177433.1| - 6.2e-25 87.8 0.1 1.6e-24 86.5 0.1 1.6 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase GlutR_dimer PF00745.15 gi|257387660|ref|YP_003177433.1| - 6.3e-23 80.6 1.4 6.3e-23 80.6 1.0 1.7 2 0 0 2 2 2 1 Glutamyl-tRNAGlu reductase, dimerisation domain NAD_binding_7 PF13241.1 gi|257387660|ref|YP_003177433.1| - 5.2e-05 23.4 0.1 0.00016 21.8 0.1 1.8 1 0 0 1 1 1 1 Putative NAD(P)-binding NAD_binding_2 PF03446.10 gi|257387660|ref|YP_003177433.1| - 0.0008 19.2 1.4 0.0017 18.1 0.0 2.1 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|257387660|ref|YP_003177433.1| - 0.0011 18.1 0.1 0.0022 17.2 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain TrkA_N PF02254.13 gi|257387660|ref|YP_003177433.1| - 0.089 12.7 5.1 0.13 12.2 0.2 2.9 1 1 0 2 2 2 0 TrkA-N domain DUF2115 PF09888.4 gi|257387660|ref|YP_003177433.1| - 0.13 12.3 0.3 0.24 11.4 0.2 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2115) Imm16 PF15565.1 gi|257387660|ref|YP_003177433.1| - 0.56 10.1 4.4 0.19 11.6 0.9 1.8 2 0 0 2 2 2 0 Immunity protein 16 NAD_binding_10 PF13460.1 gi|257387660|ref|YP_003177433.1| - 1.8 8.5 13.3 0.31 11.0 3.3 3.0 2 1 1 3 3 3 0 NADH(P)-binding 7TMR-HDED PF07697.6 gi|257387660|ref|YP_003177433.1| - 3.6 7.2 10.0 0.19 11.4 2.9 1.8 2 0 0 2 2 2 0 7TM-HD extracellular NAD_binding_7 PF13241.1 gi|257387661|ref|YP_003177434.1| - 1.7e-23 82.8 0.1 3e-23 82.0 0.0 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding Sirohm_synth_M PF14824.1 gi|257387661|ref|YP_003177434.1| - 0.04 12.8 0.0 0.071 12.0 0.0 1.4 1 0 0 1 1 1 0 Sirohaem biosynthesis protein central CysG_dimeriser PF10414.4 gi|257387661|ref|YP_003177434.1| - 0.12 11.8 0.3 0.12 11.8 0.2 2.4 2 1 0 2 2 2 0 Sirohaem synthase dimerisation region DUF2849 PF11011.3 gi|257387661|ref|YP_003177434.1| - 0.15 12.3 8.0 1.4 9.1 1.0 2.8 1 1 2 3 3 3 0 Protein of unknown function (DUF2849) IGR PF09597.5 gi|257387662|ref|YP_003177435.1| - 0.15 12.0 0.0 0.59 10.0 0.0 1.9 2 0 0 2 2 2 0 IGR protein motif zf-ribbon_3 PF13248.1 gi|257387663|ref|YP_003177436.1| - 3.2e-05 22.9 2.2 4.3e-05 22.5 1.5 1.2 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|257387663|ref|YP_003177436.1| - 0.00017 21.3 1.5 0.00021 21.0 1.0 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|257387663|ref|YP_003177436.1| - 0.019 14.4 2.5 0.031 13.7 1.7 1.4 1 0 0 1 1 1 0 zinc-ribbon domain Prok-RING_1 PF14446.1 gi|257387663|ref|YP_003177436.1| - 0.026 14.2 2.0 0.079 12.7 1.5 1.6 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 zf-RING_3 PF14369.1 gi|257387663|ref|YP_003177436.1| - 0.034 14.1 3.1 2 8.4 0.1 2.3 2 0 0 2 2 2 0 zinc-finger NRDD PF13597.1 gi|257387663|ref|YP_003177436.1| - 0.058 11.4 1.2 0.068 11.2 0.8 1.1 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase RecR PF02132.10 gi|257387663|ref|YP_003177436.1| - 0.17 11.3 0.8 0.3 10.5 0.5 1.4 1 0 0 1 1 1 0 RecR protein zf-tcix PF14952.1 gi|257387663|ref|YP_003177436.1| - 0.52 9.6 3.7 0.81 9.0 2.5 1.3 1 0 0 1 1 1 0 Putative treble-clef, zinc-finger, Zn-binding Zn-ribbon_8 PF09723.5 gi|257387663|ref|YP_003177436.1| - 1.5 8.8 4.7 1 9.3 0.3 2.1 1 1 1 2 2 2 0 Zinc ribbon domain zf-FPG_IleRS PF06827.9 gi|257387663|ref|YP_003177436.1| - 5.9 6.6 6.9 48 3.7 4.9 2.1 1 1 0 1 1 1 0 Zinc finger found in FPG and IleRS Auto_anti-p27 PF06677.7 gi|257387664|ref|YP_003177437.1| - 0.054 13.2 1.6 2.8 7.7 0.0 3.1 3 0 0 3 3 3 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-P11 PF03854.9 gi|257387664|ref|YP_003177437.1| - 8.7 5.9 7.1 31 4.1 0.3 3.5 3 1 0 3 3 3 0 P-11 zinc finger zf-C4_ClpX PF06689.8 gi|257387664|ref|YP_003177437.1| - 9.6 5.8 6.9 1.4 8.4 0.1 2.6 4 0 0 4 4 4 0 ClpX C4-type zinc finger Protoglobin PF11563.3 gi|257387665|ref|YP_003177438.1| - 0.0051 16.4 0.0 0.0051 16.4 0.0 1.1 1 0 0 1 1 1 1 Protoglobin VPEP PF07589.6 gi|257387666|ref|YP_003177439.1| - 0.0096 15.7 4.2 0.0096 15.7 2.9 3.0 2 1 1 3 3 3 2 PEP-CTERM motif MscS_TM PF12794.2 gi|257387666|ref|YP_003177439.1| - 0.14 10.7 0.4 0.16 10.5 0.3 1.0 1 0 0 1 1 1 0 Mechanosensitive ion channel inner membrane domain 1 PGPGW PF09656.5 gi|257387666|ref|YP_003177439.1| - 0.19 11.0 3.2 0.23 10.7 2.2 1.2 1 0 0 1 1 1 0 Putative transmembrane protein (PGPGW) DUF308 PF03729.8 gi|257387666|ref|YP_003177439.1| - 0.59 10.1 4.2 1 9.4 2.9 1.4 1 1 0 1 1 1 0 Short repeat of unknown function (DUF308) MFS_1 PF07690.11 gi|257387667|ref|YP_003177440.1| - 6.3e-45 153.4 58.9 1.9e-34 118.9 18.4 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.1 gi|257387667|ref|YP_003177440.1| - 9.3e-09 34.1 21.7 0.0015 17.0 9.0 3.0 1 1 2 3 3 3 3 MFS/sugar transport protein DUF3992 PF13157.1 gi|257387668|ref|YP_003177441.1| - 0.002 18.2 0.8 0.0035 17.5 0.5 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF3992) LptE PF04390.7 gi|257387668|ref|YP_003177441.1| - 1.3 8.6 4.8 5.2 6.7 0.1 2.5 1 1 1 2 2 2 0 Lipopolysaccharide-assembly Copper-bind PF00127.15 gi|257387669|ref|YP_003177442.1| - 4.3e-16 58.9 0.0 5.4e-16 58.6 0.0 1.1 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.1 gi|257387669|ref|YP_003177442.1| - 0.00042 20.1 0.0 0.00072 19.4 0.0 1.4 1 1 0 1 1 1 1 Cupredoxin-like domain Oxidored_FMN PF00724.15 gi|257387670|ref|YP_003177443.1| - 1.1e-71 241.6 0.0 1.3e-71 241.4 0.0 1.0 1 0 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family Dus PF01207.12 gi|257387670|ref|YP_003177443.1| - 0.04 12.7 0.0 0.07 11.9 0.0 1.3 1 0 0 1 1 1 0 Dihydrouridine synthase (Dus) Glyoxalase PF00903.20 gi|257387671|ref|YP_003177444.1| - 1.7e-27 95.9 0.0 2.1e-12 47.1 0.1 2.8 2 1 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.2 gi|257387671|ref|YP_003177444.1| - 5.7e-11 42.9 2.8 0.00014 22.3 0.1 2.6 2 1 0 2 2 2 2 Glyoxalase-like domain Glyoxalase_4 PF13669.1 gi|257387671|ref|YP_003177444.1| - 1.3e-07 31.5 0.3 0.35 10.8 0.0 3.3 2 1 1 3 3 3 3 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily THUMP PF02926.12 gi|257387672|ref|YP_003177445.1| - 1.5e-08 34.6 0.0 4.4e-08 33.1 0.0 1.8 2 0 0 2 2 2 1 THUMP domain DnaJ_CXXCXGXG PF00684.14 gi|257387672|ref|YP_003177445.1| - 0.0042 17.0 2.7 0.055 13.5 0.8 2.8 3 0 0 3 3 3 1 DnaJ central domain GtrA PF04138.9 gi|257387673|ref|YP_003177446.1| - 4.1e-22 78.3 10.9 4.8e-22 78.1 7.6 1.1 1 0 0 1 1 1 1 GtrA-like protein Sulfatase PF00884.18 gi|257387674|ref|YP_003177447.1| - 3.2e-40 138.2 0.1 4.3e-40 137.8 0.1 1.2 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|257387674|ref|YP_003177447.1| - 3.4e-10 39.8 0.7 0.0001 21.7 0.3 2.2 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase Metalloenzyme PF01676.13 gi|257387674|ref|YP_003177447.1| - 0.0013 18.1 0.0 0.0037 16.6 0.0 1.7 2 0 0 2 2 2 1 Metalloenzyme superfamily HAT PF02184.11 gi|257387674|ref|YP_003177447.1| - 0.015 15.0 0.0 0.044 13.5 0.0 1.7 1 0 0 1 1 1 0 HAT (Half-A-TPR) repeat DUF1501 PF07394.7 gi|257387674|ref|YP_003177447.1| - 0.037 12.8 0.1 0.068 11.9 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1501) DUF229 PF02995.12 gi|257387674|ref|YP_003177447.1| - 0.15 10.4 0.3 0.22 9.8 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF229) BacA PF02673.13 gi|257387675|ref|YP_003177448.1| - 9e-42 143.0 16.1 1.1e-41 142.7 11.1 1.0 1 0 0 1 1 1 1 Bacitracin resistance protein BacA CheF-arch PF04283.7 gi|257387676|ref|YP_003177449.1| - 4.1e-35 120.9 0.0 9.3e-35 119.8 0.0 1.5 2 0 0 2 2 2 1 Chemotaxis signal transduction system protein F from archaea CheF-arch PF04283.7 gi|257387677|ref|YP_003177450.1| - 4.6e-62 209.1 1.2 6.3e-62 208.6 0.8 1.2 1 0 0 1 1 1 1 Chemotaxis signal transduction system protein F from archaea NTP_transferase PF00483.18 gi|257387678|ref|YP_003177451.1| - 5.7e-36 124.0 0.0 7.1e-36 123.7 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|257387678|ref|YP_003177451.1| - 2.8e-17 63.2 2.4 3.6e-17 62.8 0.1 2.2 3 0 0 3 3 3 1 MobA-like NTP transferase domain Hexapep PF00132.19 gi|257387678|ref|YP_003177451.1| - 1.8e-09 36.6 4.0 2.7e-06 26.6 0.8 4.4 3 1 2 5 5 5 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|257387678|ref|YP_003177451.1| - 0.00016 21.1 1.0 0.29 10.7 0.0 3.8 4 0 0 4 4 4 2 Hexapeptide repeat of succinyl-transferase Glyco_tranf_2_3 PF13641.1 gi|257387678|ref|YP_003177451.1| - 0.015 15.0 0.1 0.015 15.0 0.1 2.2 3 1 0 3 3 3 0 Glycosyltransferase like family 2 SIS PF01380.17 gi|257387679|ref|YP_003177452.1| - 1.1e-48 164.1 0.1 2e-23 82.4 0.0 2.3 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.1 gi|257387679|ref|YP_003177452.1| - 2.6e-25 88.8 0.1 6.4e-25 87.6 0.1 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|257387679|ref|YP_003177452.1| - 9.8e-19 67.2 0.0 8.5e-14 51.0 0.0 2.3 1 1 1 2 2 2 2 Glutamine amidotransferases class-II GATase_7 PF13537.1 gi|257387679|ref|YP_003177452.1| - 1.1e-18 67.1 0.0 2.4e-18 66.0 0.0 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.1 gi|257387679|ref|YP_003177452.1| - 0.0015 17.2 0.0 0.0025 16.5 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II SIS_2 PF13580.1 gi|257387679|ref|YP_003177452.1| - 0.065 12.9 0.1 0.57 9.8 0.0 2.5 2 1 0 2 2 2 0 SIS domain CPSase_L_D2 PF02786.12 gi|257387680|ref|YP_003177453.1| - 6.1e-89 296.8 1.3 5.7e-57 192.4 0.0 3.2 2 2 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_chain PF00289.17 gi|257387680|ref|YP_003177453.1| - 3.5e-44 149.4 0.3 1.6e-22 79.6 0.0 2.7 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, N-terminal domain ATP-grasp_4 PF13535.1 gi|257387680|ref|YP_003177453.1| - 1.7e-23 83.3 1.1 5.6e-12 45.7 0.1 3.7 3 1 0 3 3 3 2 ATP-grasp domain CPSase_L_D3 PF02787.14 gi|257387680|ref|YP_003177453.1| - 1.6e-22 79.5 0.1 1.1e-21 76.8 0.1 2.2 1 1 0 1 1 1 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ATPgrasp_Ter PF15632.1 gi|257387680|ref|YP_003177453.1| - 1.2e-20 73.5 0.1 4.8e-08 32.1 0.0 4.5 5 0 0 5 5 5 4 ATP-grasp in the biosynthetic pathway with Ter operon Dala_Dala_lig_C PF07478.8 gi|257387680|ref|YP_003177453.1| - 1.7e-08 34.1 0.0 1.2e-05 24.8 0.0 2.6 2 0 0 2 2 2 2 D-ala D-ala ligase C-terminus ATP-grasp PF02222.17 gi|257387680|ref|YP_003177453.1| - 7.4e-08 31.9 0.0 0.027 13.8 0.0 3.4 2 1 0 2 2 2 2 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|257387680|ref|YP_003177453.1| - 2.7e-07 30.6 0.1 0.033 14.0 0.0 3.1 3 0 0 3 3 3 2 ATP-grasp domain DUF433 PF04255.9 gi|257387680|ref|YP_003177453.1| - 0.025 14.0 0.0 14 5.1 0.0 3.9 4 0 0 4 4 4 0 Protein of unknown function (DUF433) MCPsignal PF00015.16 gi|257387683|ref|YP_003177456.1| - 2.9e-48 164.2 78.3 2.1e-46 158.1 26.3 4.1 1 1 2 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF948 PF06103.6 gi|257387683|ref|YP_003177456.1| - 0.00066 19.4 33.5 0.029 14.2 1.2 6.1 4 1 2 6 6 6 2 Bacterial protein of unknown function (DUF948) LXG PF04740.7 gi|257387683|ref|YP_003177456.1| - 0.0011 18.7 39.7 0.006 16.3 8.7 4.3 3 1 0 3 3 3 2 LXG domain of WXG superfamily Laminin_I PF06008.9 gi|257387683|ref|YP_003177456.1| - 0.0022 17.3 12.7 0.0022 17.3 8.8 4.6 2 2 1 4 4 4 2 Laminin Domain I HAMP PF00672.20 gi|257387683|ref|YP_003177456.1| - 0.023 14.8 0.3 0.023 14.8 0.2 5.6 4 2 2 6 6 6 0 HAMP domain ISG65-75 PF11727.3 gi|257387683|ref|YP_003177456.1| - 0.12 11.3 49.0 0.054 12.5 4.4 4.1 2 1 2 4 4 4 0 Invariant surface glycoprotein Reo_sigmaC PF04582.7 gi|257387683|ref|YP_003177456.1| - 0.65 9.1 30.2 0.3 10.2 4.7 3.0 1 1 3 4 4 4 0 Reovirus sigma C capsid protein DUF3407 PF11887.3 gi|257387683|ref|YP_003177456.1| - 1.1 8.5 17.9 0.22 10.7 1.3 3.2 1 1 1 3 3 3 0 Protein of unknown function (DUF3407) Atg14 PF10186.4 gi|257387683|ref|YP_003177456.1| - 1.5 7.6 36.8 0.44 9.4 4.0 3.4 3 1 0 3 3 3 0 UV radiation resistance protein and autophagy-related subunit 14 Mod_r PF07200.8 gi|257387683|ref|YP_003177456.1| - 2 8.3 41.7 1.8 8.4 0.7 4.7 2 2 2 4 4 4 0 Modifier of rudimentary (Mod(r)) protein Laminin_II PF06009.7 gi|257387683|ref|YP_003177456.1| - 9.7 5.9 48.7 0.23 11.2 0.9 6.0 1 1 4 6 6 6 0 Laminin Domain II 7TMR-DISM_7TM PF07695.6 gi|257387684|ref|YP_003177457.1| - 0.0019 17.8 3.3 0.0022 17.7 2.3 1.0 1 0 0 1 1 1 1 7TM diverse intracellular signalling PucR PF07905.6 gi|257387684|ref|YP_003177457.1| - 0.028 14.0 0.3 0.046 13.2 0.1 1.4 1 1 1 2 2 2 0 Purine catabolism regulatory protein-like family Peptidase_A8 PF01252.13 gi|257387684|ref|YP_003177457.1| - 0.073 12.6 1.3 0.085 12.4 0.9 1.2 1 0 0 1 1 1 0 Signal peptidase (SPase) II DUF2776 PF10951.3 gi|257387684|ref|YP_003177457.1| - 0.097 11.7 1.6 0.088 11.8 0.4 1.5 1 1 1 2 2 2 0 Protein of unknown function (DUF2776) YhhN PF07947.9 gi|257387684|ref|YP_003177457.1| - 0.11 11.8 2.7 0.18 11.1 1.9 1.3 1 1 0 1 1 1 0 YhhN-like protein MrpF_PhaF PF04066.8 gi|257387684|ref|YP_003177457.1| - 0.16 12.2 3.5 0.58 10.4 0.1 2.7 2 1 1 3 3 3 0 Multiple resistance and pH regulation protein F (MrpF / PhaF) Membralin PF09746.4 gi|257387684|ref|YP_003177457.1| - 0.2 10.6 0.5 0.24 10.3 0.4 1.1 1 0 0 1 1 1 0 Tumour-associated protein PqiA PF04403.8 gi|257387684|ref|YP_003177457.1| - 1 8.8 4.1 2.3 7.7 0.8 2.0 1 1 1 2 2 2 0 Paraquat-inducible protein A Hydrolase_like PF13242.1 gi|257387685|ref|YP_003177458.1| - 0.062 13.0 0.2 0.3 10.8 0.1 2.1 1 1 1 2 2 2 0 HAD-hyrolase-like Pyr_redox_2 PF07992.9 gi|257387687|ref|YP_003177460.1| - 1.7e-32 112.9 0.4 2.2e-32 112.6 0.3 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|257387687|ref|YP_003177460.1| - 7.6e-09 35.8 1.5 0.00057 20.2 0.0 3.4 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|257387687|ref|YP_003177460.1| - 0.0005 18.6 0.2 0.056 11.8 0.0 2.6 3 0 0 3 3 3 2 HI0933-like protein Pyr_redox_3 PF13738.1 gi|257387687|ref|YP_003177460.1| - 0.0013 18.8 2.3 0.0026 17.8 0.3 2.3 2 1 1 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|257387687|ref|YP_003177460.1| - 0.0068 16.4 2.6 0.27 11.3 0.0 3.4 3 0 0 3 3 3 1 NAD(P)-binding Rossmann-like domain Trp_halogenase PF04820.9 gi|257387687|ref|YP_003177460.1| - 0.071 11.7 0.1 3.6 6.0 0.0 2.2 2 0 0 2 2 2 0 Tryptophan halogenase DAO PF01266.19 gi|257387687|ref|YP_003177460.1| - 0.096 11.5 5.8 1.4 7.7 0.0 3.1 3 0 0 3 3 3 0 FAD dependent oxidoreductase NAD_binding_9 PF13454.1 gi|257387687|ref|YP_003177460.1| - 0.31 10.8 5.5 4 7.2 0.0 2.9 3 0 0 3 3 3 0 FAD-NAD(P)-binding FAD_binding_2 PF00890.19 gi|257387687|ref|YP_003177460.1| - 0.45 9.3 7.8 3.6 6.3 0.0 3.4 3 0 0 3 3 3 0 FAD binding domain Lycopene_cycl PF05834.7 gi|257387687|ref|YP_003177460.1| - 0.49 9.2 4.3 0.9 8.3 0.0 2.2 2 0 0 2 2 2 0 Lycopene cyclase protein MCPsignal PF00015.16 gi|257387689|ref|YP_003177462.1| - 7.4e-50 169.4 61.0 2.9e-47 160.9 21.8 3.6 2 1 1 3 3 3 3 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.20 gi|257387689|ref|YP_003177462.1| - 4e-10 39.7 22.9 9.3e-05 22.5 0.0 5.5 4 2 1 5 5 4 2 HAMP domain AAA_13 PF13166.1 gi|257387689|ref|YP_003177462.1| - 0.00019 20.0 20.3 0.0064 15.0 2.0 2.7 1 1 1 2 2 2 2 AAA domain Laminin_II PF06009.7 gi|257387689|ref|YP_003177462.1| - 0.00037 20.2 32.2 0.017 14.8 2.1 5.9 3 2 3 6 6 6 3 Laminin Domain II BLOC1_2 PF10046.4 gi|257387689|ref|YP_003177462.1| - 0.00068 19.7 20.5 0.33 11.1 1.2 5.7 4 3 1 5 5 5 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 Seryl_tRNA_N PF02403.17 gi|257387689|ref|YP_003177462.1| - 0.0017 18.3 21.1 3.5 7.6 0.4 5.9 2 1 2 6 6 6 2 Seryl-tRNA synthetase N-terminal domain NPV_P10 PF05531.7 gi|257387689|ref|YP_003177462.1| - 0.0023 18.1 27.9 0.084 13.1 1.1 6.0 4 2 2 6 6 5 2 Nucleopolyhedrovirus P10 protein DUF948 PF06103.6 gi|257387689|ref|YP_003177462.1| - 0.0036 17.1 30.3 0.53 10.1 0.5 6.3 2 2 3 6 6 6 2 Bacterial protein of unknown function (DUF948) DUF677 PF05055.7 gi|257387689|ref|YP_003177462.1| - 0.0043 15.7 5.7 0.0043 15.7 3.9 3.5 3 1 0 3 3 3 2 Protein of unknown function (DUF677) DUF2365 PF10157.4 gi|257387689|ref|YP_003177462.1| - 0.0046 16.8 13.7 0.036 13.9 1.4 3.6 2 1 1 3 3 3 2 Uncharacterized conserved protein (DUF2365) ISG65-75 PF11727.3 gi|257387689|ref|YP_003177462.1| - 0.0052 15.8 33.0 0.1 11.6 1.5 4.1 2 1 2 4 4 4 3 Invariant surface glycoprotein DUF1664 PF07889.7 gi|257387689|ref|YP_003177462.1| - 0.0097 15.7 21.0 2.3 8.0 1.7 5.2 3 1 1 5 5 5 2 Protein of unknown function (DUF1664) IncA PF04156.9 gi|257387689|ref|YP_003177462.1| - 0.014 15.0 23.9 0.35 10.4 1.0 4.8 2 2 1 3 3 3 0 IncA protein Spc7 PF08317.6 gi|257387689|ref|YP_003177462.1| - 0.017 13.8 15.7 0.55 8.8 0.3 3.7 1 1 1 3 3 3 0 Spc7 kinetochore protein Syntaxin PF00804.20 gi|257387689|ref|YP_003177462.1| - 0.05 13.7 22.5 6.5 6.9 3.5 5.7 2 1 3 5 5 5 0 Syntaxin Syntaxin-6_N PF09177.6 gi|257387689|ref|YP_003177462.1| - 0.054 13.9 25.5 3.1 8.2 0.4 5.9 2 2 4 6 6 6 0 Syntaxin 6, N-terminal PhaP_Bmeg PF09602.5 gi|257387689|ref|YP_003177462.1| - 0.058 13.2 7.6 0.071 12.9 1.0 3.2 2 2 1 3 3 3 0 Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg) CENP-F_leu_zip PF10473.4 gi|257387689|ref|YP_003177462.1| - 0.07 12.9 20.7 0.034 13.9 1.6 4.8 2 1 4 6 6 6 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DASH_Duo1 PF08651.5 gi|257387689|ref|YP_003177462.1| - 0.092 12.3 7.4 5.8 6.5 0.1 5.2 3 2 3 6 6 6 0 DASH complex subunit Duo1 Laminin_I PF06008.9 gi|257387689|ref|YP_003177462.1| - 0.098 11.9 35.6 0.71 9.1 3.3 5.0 2 2 1 5 5 5 0 Laminin Domain I Reo_sigmaC PF04582.7 gi|257387689|ref|YP_003177462.1| - 0.13 11.4 27.8 0.23 10.6 5.2 3.4 2 1 1 3 3 3 0 Reovirus sigma C capsid protein FlaC_arch PF05377.6 gi|257387689|ref|YP_003177462.1| - 0.15 11.9 15.1 18 5.3 0.0 6.0 6 2 2 8 8 6 0 Flagella accessory protein C (FlaC) Prominin PF05478.6 gi|257387689|ref|YP_003177462.1| - 0.19 9.2 9.5 0.04 11.4 4.1 1.8 2 0 0 2 2 2 0 Prominin DUF4200 PF13863.1 gi|257387689|ref|YP_003177462.1| - 0.22 11.4 16.5 5.1 7.0 3.6 4.4 3 1 1 4 4 4 0 Domain of unknown function (DUF4200) Corona_S2 PF01601.11 gi|257387689|ref|YP_003177462.1| - 0.22 9.5 3.1 0.19 9.7 0.4 2.0 2 0 0 2 2 2 0 Coronavirus S2 glycoprotein TPR_MLP1_2 PF07926.7 gi|257387689|ref|YP_003177462.1| - 0.23 11.1 24.4 2.6 7.8 0.5 4.6 2 2 2 4 4 4 0 TPR/MLP1/MLP2-like protein RmuC PF02646.11 gi|257387689|ref|YP_003177462.1| - 0.24 10.1 14.3 3.4 6.4 0.3 4.9 2 1 2 5 5 5 0 RmuC family WEMBL PF05701.6 gi|257387689|ref|YP_003177462.1| - 0.3 9.5 45.8 0.039 12.4 6.0 3.3 2 1 1 3 3 3 0 Weak chloroplast movement under blue light COG2 PF06148.6 gi|257387689|ref|YP_003177462.1| - 0.32 10.8 20.2 6.7 6.5 1.6 6.1 3 2 1 4 4 4 0 COG (conserved oligomeric Golgi) complex component, COG2 Fib_alpha PF08702.5 gi|257387689|ref|YP_003177462.1| - 0.32 11.1 10.4 5.2 7.1 0.3 4.7 2 2 2 5 5 5 0 Fibrinogen alpha/beta chain family Myosin_tail_1 PF01576.14 gi|257387689|ref|YP_003177462.1| - 0.39 8.3 36.9 0.15 9.7 4.4 2.2 1 1 1 2 2 2 0 Myosin tail IFT57 PF10498.4 gi|257387689|ref|YP_003177462.1| - 1.1 7.9 12.8 0.29 9.8 0.5 3.3 2 1 0 2 2 2 0 Intra-flagellar transport protein 57 APG17 PF04108.7 gi|257387689|ref|YP_003177462.1| - 1.3 7.7 21.7 4.1 6.0 13.3 2.5 1 1 1 2 2 2 0 Autophagy protein Apg17 Mnd1 PF03962.10 gi|257387689|ref|YP_003177462.1| - 1.6 8.3 27.2 4.2 6.9 0.2 4.2 1 1 3 4 4 4 0 Mnd1 family Prefoldin_2 PF01920.15 gi|257387689|ref|YP_003177462.1| - 2.2 8.0 16.0 5.6 6.7 0.3 5.4 4 2 2 6 6 5 0 Prefoldin subunit Bacillus_HBL PF05791.6 gi|257387689|ref|YP_003177462.1| - 5 6.4 7.3 3.1 7.1 0.3 3.5 3 1 1 4 4 4 0 Bacillus haemolytic enterotoxin (HBL) Amino_oxidase PF01593.19 gi|257387690|ref|YP_003177463.1| - 1.5e-18 67.1 0.9 6.1e-16 58.5 0.0 2.2 1 1 1 2 2 2 2 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.1 gi|257387690|ref|YP_003177463.1| - 3e-14 52.7 0.3 1.2e-13 50.8 0.2 2.1 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|257387690|ref|YP_003177463.1| - 4.7e-11 42.1 1.6 2.1e-07 30.2 0.2 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|257387690|ref|YP_003177463.1| - 1.5e-06 27.3 5.7 3.6e-06 26.0 2.4 2.0 2 0 0 2 2 2 1 FAD binding domain Pyr_redox_2 PF07992.9 gi|257387690|ref|YP_003177463.1| - 1.5e-05 24.9 0.2 3.9e-05 23.6 0.1 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|257387690|ref|YP_003177463.1| - 0.00016 21.9 0.1 0.00046 20.5 0.1 1.8 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|257387690|ref|YP_003177463.1| - 0.00016 20.8 1.5 0.00019 20.6 0.1 1.7 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|257387690|ref|YP_003177463.1| - 0.00017 21.6 0.2 0.00027 21.0 0.1 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|257387690|ref|YP_003177463.1| - 0.00025 20.8 0.4 0.009 15.8 0.0 2.3 2 0 0 2 2 2 1 FAD-NAD(P)-binding GIDA PF01134.17 gi|257387690|ref|YP_003177463.1| - 0.00028 19.8 0.3 0.00049 19.0 0.2 1.4 1 0 0 1 1 1 1 Glucose inhibited division protein A HI0933_like PF03486.9 gi|257387690|ref|YP_003177463.1| - 0.00064 18.2 2.0 0.00065 18.2 0.6 1.5 2 0 0 2 2 2 1 HI0933-like protein Thi4 PF01946.12 gi|257387690|ref|YP_003177463.1| - 0.0033 16.5 1.1 0.019 14.0 0.5 2.1 2 0 0 2 2 2 1 Thi4 family 3HCDH_N PF02737.13 gi|257387690|ref|YP_003177463.1| - 0.024 14.2 0.1 0.041 13.5 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FMO-like PF00743.14 gi|257387690|ref|YP_003177463.1| - 0.042 12.0 0.0 0.067 11.3 0.0 1.3 1 0 0 1 1 1 0 Flavin-binding monooxygenase-like Lycopene_cycl PF05834.7 gi|257387690|ref|YP_003177463.1| - 0.079 11.8 0.0 0.22 10.3 0.0 1.7 2 0 0 2 2 2 0 Lycopene cyclase protein FAD_binding_3 PF01494.14 gi|257387690|ref|YP_003177463.1| - 0.079 11.9 0.6 0.14 11.1 0.4 1.4 1 0 0 1 1 1 0 FAD binding domain Trp_halogenase PF04820.9 gi|257387690|ref|YP_003177463.1| - 0.09 11.3 0.1 0.14 10.7 0.0 1.3 1 0 0 1 1 1 0 Tryptophan halogenase NAD_Gly3P_dh_N PF01210.18 gi|257387690|ref|YP_003177463.1| - 0.15 11.7 0.1 0.26 11.0 0.1 1.4 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.11 gi|257387690|ref|YP_003177463.1| - 0.2 11.0 1.3 0.39 10.1 0.9 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA HATPase_c PF02518.21 gi|257387691|ref|YP_003177464.1| - 7.2e-16 57.8 0.1 1.9e-15 56.5 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_2 PF13185.1 gi|257387691|ref|YP_003177464.1| - 2.2e-06 28.2 0.2 8.5e-06 26.3 0.2 2.1 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.1 gi|257387691|ref|YP_003177464.1| - 3.9e-06 26.9 0.9 1.5e-05 25.0 0.0 2.5 3 0 0 3 3 3 1 GAF domain HATPase_c_2 PF13581.1 gi|257387691|ref|YP_003177464.1| - 1.6e-05 24.6 0.1 4.9e-05 23.1 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_8 PF13188.1 gi|257387691|ref|YP_003177464.1| - 9.2e-05 22.1 0.0 0.00033 20.4 0.0 1.9 1 0 0 1 1 1 1 PAS domain PAS PF00989.19 gi|257387691|ref|YP_003177464.1| - 0.0001 22.0 0.0 0.0005 19.8 0.0 2.1 2 0 0 2 2 2 1 PAS fold PAS_4 PF08448.5 gi|257387691|ref|YP_003177464.1| - 0.00055 19.9 3.3 0.0031 17.5 0.6 2.8 2 1 0 2 2 2 1 PAS fold HATPase_c_3 PF13589.1 gi|257387691|ref|YP_003177464.1| - 0.00081 19.0 0.0 0.002 17.8 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|257387691|ref|YP_003177464.1| - 0.0097 16.2 0.0 0.4 11.0 0.0 2.8 1 1 0 1 1 1 1 PAS domain HATPase_c_5 PF14501.1 gi|257387691|ref|YP_003177464.1| - 0.1 12.3 0.0 0.18 11.4 0.0 1.4 1 0 0 1 1 1 0 GHKL domain NPV_P10 PF05531.7 gi|257387691|ref|YP_003177464.1| - 2.4 8.4 6.3 1.4 9.1 0.1 3.1 2 1 1 3 3 3 0 Nucleopolyhedrovirus P10 protein GHMP_kinases_N PF00288.21 gi|257387692|ref|YP_003177465.1| - 8e-14 51.4 2.1 2e-13 50.1 1.4 1.7 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|257387692|ref|YP_003177465.1| - 3.8e-08 33.4 0.1 9.8e-08 32.1 0.1 1.8 1 0 0 1 1 1 1 GHMP kinases C terminal DUF4131 PF13567.1 gi|257387693|ref|YP_003177466.1| - 1.7 8.0 4.6 2.1 7.7 3.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) DUF308 PF03729.8 gi|257387694|ref|YP_003177467.1| - 0.36 10.8 9.7 0.47 10.4 6.7 1.2 1 0 0 1 1 1 0 Short repeat of unknown function (DUF308) DUF3040 PF11239.3 gi|257387694|ref|YP_003177467.1| - 0.92 9.6 9.9 25 4.9 6.8 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF3040) MS_channel PF00924.13 gi|257387695|ref|YP_003177468.1| - 2.4e-46 157.6 1.7 2.6e-46 157.5 0.0 1.9 2 1 0 2 2 2 1 Mechanosensitive ion channel Amastin PF07344.6 gi|257387695|ref|YP_003177468.1| - 8.8 5.9 10.4 1.4 8.5 2.6 2.2 2 0 0 2 2 2 0 Amastin surface glycoprotein DUF393 PF04134.7 gi|257387696|ref|YP_003177469.1| - 1.7e-28 100.0 0.0 2.1e-28 99.7 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function, DUF393 SOR_SNZ PF01680.12 gi|257387697|ref|YP_003177470.1| - 3.9e-97 323.8 5.6 5.1e-97 323.5 3.9 1.1 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.9 gi|257387697|ref|YP_003177470.1| - 1.5e-11 43.8 4.2 1.5e-06 27.4 0.5 2.2 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG Dus PF01207.12 gi|257387697|ref|YP_003177470.1| - 0.0012 17.7 0.4 0.12 11.1 0.0 2.2 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) OMPdecase PF00215.19 gi|257387697|ref|YP_003177470.1| - 0.0017 17.7 0.1 0.008 15.6 0.1 2.0 1 1 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family IGPS PF00218.16 gi|257387697|ref|YP_003177470.1| - 0.0072 15.4 0.1 0.03 13.3 0.0 2.0 3 0 0 3 3 3 1 Indole-3-glycerol phosphate synthase NanE PF04131.9 gi|257387697|ref|YP_003177470.1| - 0.031 13.2 0.2 0.23 10.4 0.0 2.2 2 0 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase TMP-TENI PF02581.12 gi|257387697|ref|YP_003177470.1| - 0.07 12.2 0.2 0.32 10.0 0.0 2.0 2 0 0 2 2 2 0 Thiamine monophosphate synthase/TENI ThiS PF02597.15 gi|257387698|ref|YP_003177471.1| - 3.1e-13 49.9 0.1 6e-13 49.0 0.1 1.5 1 1 0 1 1 1 1 ThiS family DUF3354 PF11834.3 gi|257387698|ref|YP_003177471.1| - 0.043 13.4 0.3 0.064 12.8 0.0 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF3354) Acetyltransf_1 PF00583.19 gi|257387699|ref|YP_003177472.1| - 2.1e-12 46.8 0.5 6.9e-12 45.2 0.0 2.1 3 0 0 3 3 3 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|257387699|ref|YP_003177472.1| - 7.3e-06 26.1 4.9 6e-05 23.1 0.2 2.3 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|257387699|ref|YP_003177472.1| - 2.6e-05 24.2 2.2 2.6e-05 24.2 1.5 2.8 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|257387699|ref|YP_003177472.1| - 4.5e-05 23.5 0.0 0.0001 22.4 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|257387699|ref|YP_003177472.1| - 0.00017 21.2 0.0 0.00033 20.3 0.0 1.5 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.1 gi|257387699|ref|YP_003177472.1| - 0.00026 20.8 0.3 0.0012 18.7 0.1 2.1 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|257387699|ref|YP_003177472.1| - 0.019 14.8 0.9 0.035 13.9 0.0 1.8 2 0 0 2 2 2 0 GCN5-related N-acetyl-transferase Acetyltransf_3 PF13302.1 gi|257387699|ref|YP_003177472.1| - 0.022 14.9 0.1 0.087 12.9 0.0 1.9 2 0 0 2 2 2 0 Acetyltransferase (GNAT) domain TPM PF04536.9 gi|257387699|ref|YP_003177472.1| - 0.47 10.3 2.7 3.2 7.6 0.0 2.6 3 0 0 3 3 3 0 TLP18.3, Psb32 and MOLO-1 founding proteins of phosphatase Asparaginase PF00710.15 gi|257387700|ref|YP_003177473.1| - 1.4e-87 293.5 2.8 1.7e-87 293.2 1.9 1.1 1 0 0 1 1 1 1 Asparaginase NurA PF09376.5 gi|257387702|ref|YP_003177475.1| - 7.5e-28 97.6 0.0 9.4e-28 97.3 0.0 1.1 1 0 0 1 1 1 1 NurA domain Peptidase_S9 PF00326.16 gi|257387703|ref|YP_003177476.1| - 5e-55 186.0 0.1 7.3e-55 185.4 0.1 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family PD40 PF07676.7 gi|257387703|ref|YP_003177476.1| - 3.4e-15 55.3 3.6 1.3e-05 24.7 0.0 5.8 6 0 0 6 6 6 4 WD40-like Beta Propeller Repeat Abhydrolase_5 PF12695.2 gi|257387703|ref|YP_003177476.1| - 1.2e-09 38.0 0.2 2.7e-09 36.9 0.1 1.6 1 0 0 1 1 1 1 Alpha/beta hydrolase family DLH PF01738.13 gi|257387703|ref|YP_003177476.1| - 6e-08 32.2 0.0 1.4e-07 31.0 0.0 1.5 1 1 0 1 1 1 1 Dienelactone hydrolase family DPPIV_N PF00930.16 gi|257387703|ref|YP_003177476.1| - 3.3e-06 25.9 0.0 0.01 14.4 0.0 4.0 3 1 0 3 3 3 1 Dipeptidyl peptidase IV (DPP IV) N-terminal region Abhydrolase_3 PF07859.8 gi|257387703|ref|YP_003177476.1| - 0.00027 20.5 0.3 0.37 10.3 0.0 2.4 1 1 0 2 2 2 2 alpha/beta hydrolase fold BAAT_C PF08840.6 gi|257387703|ref|YP_003177476.1| - 0.00048 19.9 0.0 0.038 13.7 0.0 2.3 1 1 0 1 1 1 1 BAAT / Acyl-CoA thioester hydrolase C terminal Abhydrolase_4 PF08386.5 gi|257387703|ref|YP_003177476.1| - 0.0021 17.9 0.0 0.0083 16.0 0.0 2.0 2 0 0 2 2 2 1 TAP-like protein AXE1 PF05448.7 gi|257387703|ref|YP_003177476.1| - 0.0032 16.0 0.5 0.34 9.3 0.4 2.1 1 1 0 1 1 1 1 Acetyl xylan esterase (AXE1) Abhydrolase_2 PF02230.11 gi|257387703|ref|YP_003177476.1| - 0.02 14.3 0.0 0.05 13.0 0.0 1.6 2 0 0 2 2 2 0 Phospholipase/Carboxylesterase Glyco_tranf_2_3 PF13641.1 gi|257387705|ref|YP_003177478.1| - 8.8e-37 127.0 0.5 1.3e-36 126.5 0.4 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|257387705|ref|YP_003177478.1| - 4.7e-22 78.6 12.4 4.7e-22 78.6 8.6 3.9 4 1 0 4 4 4 1 Glycosyl transferase family group 2 Glycos_transf_2 PF00535.21 gi|257387705|ref|YP_003177478.1| - 2.9e-18 66.1 0.0 4.7e-18 65.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.1 gi|257387705|ref|YP_003177478.1| - 5.2e-08 32.3 0.1 8.8e-08 31.6 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.4 gi|257387705|ref|YP_003177478.1| - 0.17 10.9 0.0 0.78 8.7 0.0 1.9 2 0 0 2 2 2 0 Glycosyltransferase like family 2 AAA_10 PF12846.2 gi|257387706|ref|YP_003177479.1| - 1.6e-19 70.4 0.0 1.3e-11 44.4 0.0 2.1 2 0 0 2 2 2 2 AAA-like domain DUF87 PF01935.12 gi|257387706|ref|YP_003177479.1| - 5e-10 39.5 0.0 9.5e-10 38.6 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function DUF87 DUF853 PF05872.7 gi|257387706|ref|YP_003177479.1| - 1.1e-06 27.2 0.1 0.0013 17.1 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) FtsK_SpoIIIE PF01580.13 gi|257387706|ref|YP_003177479.1| - 3.5e-05 23.3 0.0 0.022 14.2 0.0 2.3 2 0 0 2 2 2 2 FtsK/SpoIIIE family HAS-barrel PF09378.5 gi|257387706|ref|YP_003177479.1| - 0.0028 17.5 0.0 0.036 13.9 0.0 2.4 2 0 0 2 2 2 1 HAS barrel domain AAA_19 PF13245.1 gi|257387706|ref|YP_003177479.1| - 0.014 15.1 0.0 0.22 11.2 0.0 2.5 2 0 0 2 2 2 0 Part of AAA domain Zot PF05707.7 gi|257387706|ref|YP_003177479.1| - 0.04 13.3 0.1 1 8.8 0.0 2.2 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) TrwB_AAD_bind PF10412.4 gi|257387706|ref|YP_003177479.1| - 0.044 12.4 0.0 0.07 11.7 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain T2SE PF00437.15 gi|257387706|ref|YP_003177479.1| - 0.058 12.2 0.0 0.16 10.8 0.0 1.6 2 0 0 2 2 2 0 Type II/IV secretion system protein Usp PF00582.21 gi|257387707|ref|YP_003177480.1| - 3e-35 121.4 0.2 3.3e-35 121.3 0.1 1.0 1 0 0 1 1 1 1 Universal stress protein family TPR_6 PF13174.1 gi|257387707|ref|YP_003177480.1| - 0.072 13.5 0.3 4.9 7.8 0.0 2.4 2 0 0 2 2 2 0 Tetratricopeptide repeat Usp PF00582.21 gi|257387708|ref|YP_003177481.1| - 4.3e-10 39.9 0.6 4.9e-10 39.7 0.4 1.1 1 0 0 1 1 1 1 Universal stress protein family Reductase_C PF14759.1 gi|257387708|ref|YP_003177481.1| - 0.019 15.2 0.0 0.043 14.1 0.0 1.5 1 0 0 1 1 1 0 Reductase C-terminal MDMPI_N PF11716.3 gi|257387708|ref|YP_003177481.1| - 0.35 11.2 3.5 0.61 10.5 2.4 1.5 1 1 0 1 1 1 0 Mycothiol maleylpyruvate isomerase N-terminal domain KaiC PF06745.8 gi|257387709|ref|YP_003177482.1| - 1.6e-57 194.2 0.3 1.8e-57 194.0 0.2 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.1 gi|257387709|ref|YP_003177482.1| - 7.5e-10 38.5 0.0 1.3e-09 37.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain DnaB_C PF03796.10 gi|257387709|ref|YP_003177482.1| - 3.4e-05 22.8 0.1 0.0024 16.7 0.0 2.2 1 1 1 2 2 2 1 DnaB-like helicase C terminal domain GvpD PF07088.6 gi|257387709|ref|YP_003177482.1| - 0.0001 20.7 0.1 0.00021 19.7 0.1 1.4 1 0 0 1 1 1 1 GvpD gas vesicle protein RecA PF00154.16 gi|257387709|ref|YP_003177482.1| - 0.00067 18.8 0.0 0.0013 17.8 0.0 1.4 1 0 0 1 1 1 1 recA bacterial DNA recombination protein MEDS PF14417.1 gi|257387709|ref|YP_003177482.1| - 0.0034 16.4 0.0 0.0055 15.7 0.0 1.2 1 0 0 1 1 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain AAA_24 PF13479.1 gi|257387709|ref|YP_003177482.1| - 0.0053 16.3 0.0 0.009 15.6 0.0 1.3 1 0 0 1 1 1 1 AAA domain T2SE PF00437.15 gi|257387709|ref|YP_003177482.1| - 0.0077 15.1 0.0 0.011 14.6 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein IstB_IS21 PF01695.12 gi|257387709|ref|YP_003177482.1| - 0.014 14.8 0.1 0.034 13.5 0.0 1.6 1 1 0 1 1 1 0 IstB-like ATP binding protein AAA_14 PF13173.1 gi|257387709|ref|YP_003177482.1| - 0.039 13.8 0.0 0.079 12.8 0.0 1.6 1 1 0 1 1 1 0 AAA domain PhoH PF02562.11 gi|257387709|ref|YP_003177482.1| - 0.05 12.8 0.0 0.079 12.1 0.0 1.2 1 0 0 1 1 1 0 PhoH-like protein AAA_33 PF13671.1 gi|257387709|ref|YP_003177482.1| - 0.054 13.3 0.1 0.1 12.4 0.1 1.5 1 1 0 1 1 1 0 AAA domain TrwB_AAD_bind PF10412.4 gi|257387709|ref|YP_003177482.1| - 0.11 11.1 0.2 0.16 10.6 0.1 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain NAD_kinase PF01513.16 gi|257387710|ref|YP_003177483.1| - 9e-41 139.5 0.1 1.1e-40 139.2 0.0 1.1 1 0 0 1 1 1 1 ATP-NAD kinase DUF2108 PF09881.4 gi|257387711|ref|YP_003177484.1| - 0.29 10.9 2.5 0.27 11.0 0.9 1.6 1 1 1 2 2 2 0 Predicted membrane protein (DUF2108) Response_reg PF00072.19 gi|257387712|ref|YP_003177485.1| - 5.9e-18 64.9 1.3 5.9e-18 64.9 0.9 1.8 2 0 0 2 2 2 1 Response regulator receiver domain HalX PF08663.5 gi|257387712|ref|YP_003177485.1| - 1.3e-14 53.8 9.5 1.3e-14 53.8 6.6 1.9 2 0 0 2 2 2 1 HalX domain IF-2B PF01008.12 gi|257387712|ref|YP_003177485.1| - 0.022 13.7 0.4 0.054 12.4 0.0 1.8 2 0 0 2 2 2 0 Initiation factor 2 subunit family Halo_GVPC PF05465.8 gi|257387712|ref|YP_003177485.1| - 0.07 13.0 0.9 0.07 13.0 0.7 3.2 3 0 0 3 3 3 0 Halobacterial gas vesicle protein C (GVPC) repeat PAS_4 PF08448.5 gi|257387713|ref|YP_003177486.1| - 0.0017 18.3 0.2 0.0029 17.6 0.1 1.4 1 0 0 1 1 1 1 PAS fold GCV_T PF01571.16 gi|257387713|ref|YP_003177486.1| - 0.026 13.8 0.0 0.034 13.5 0.0 1.2 1 0 0 1 1 1 0 Aminomethyltransferase folate-binding domain ABC2_membrane_3 PF12698.2 gi|257387713|ref|YP_003177486.1| - 3.3 6.6 4.6 5.2 6.0 3.2 1.2 1 0 0 1 1 1 0 ABC-2 family transporter protein TetR_N PF00440.18 gi|257387714|ref|YP_003177487.1| - 1.2e-11 44.0 0.0 2.5e-11 43.0 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_6 PF13977.1 gi|257387714|ref|YP_003177487.1| - 4.5e-10 39.5 0.2 9.3e-10 38.5 0.1 1.6 1 0 0 1 1 1 1 Bacterial transcriptional repressor FCD PF07729.7 gi|257387714|ref|YP_003177487.1| - 0.0091 16.3 0.0 0.017 15.4 0.0 1.4 1 0 0 1 1 1 1 FCD domain HTH_7 PF02796.10 gi|257387714|ref|YP_003177487.1| - 0.029 14.2 0.0 0.085 12.7 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain of resolvase TetR_C_5 PF08360.6 gi|257387714|ref|YP_003177487.1| - 0.05 13.5 0.0 0.1 12.5 0.0 1.5 1 0 0 1 1 1 0 QacR-like protein, C-terminal region HTH_23 PF13384.1 gi|257387714|ref|YP_003177487.1| - 0.055 13.1 0.0 0.12 12.0 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain UPF0122 PF04297.9 gi|257387714|ref|YP_003177487.1| - 0.07 13.1 0.1 0.15 12.0 0.1 1.5 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like TetR_C_4 PF08359.6 gi|257387714|ref|YP_003177487.1| - 0.078 12.9 0.0 0.11 12.3 0.0 1.2 1 0 0 1 1 1 0 YsiA-like protein, C-terminal region DSHCT PF08148.7 gi|257387714|ref|YP_003177487.1| - 0.099 11.8 0.0 0.21 10.8 0.0 1.5 1 1 0 1 1 1 0 DSHCT (NUC185) domain NPCBM_assoc PF10633.4 gi|257387715|ref|YP_003177488.1| - 9.1e-19 67.3 16.8 0.0079 16.2 0.0 8.0 5 4 0 5 5 5 5 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.6 gi|257387715|ref|YP_003177488.1| - 4e-18 65.3 16.8 0.0054 16.7 0.2 5.6 5 1 0 5 5 5 5 CARDB DUF11 PF01345.13 gi|257387715|ref|YP_003177488.1| - 2.9e-12 46.4 23.2 1.7e-06 28.0 1.0 5.8 5 1 0 5 5 5 3 Domain of unknown function DUF11 Transglut_C PF00927.17 gi|257387715|ref|YP_003177488.1| - 2.3e-09 37.2 0.0 0.31 11.0 0.0 5.4 4 1 0 5 5 5 2 Transglutaminase family, C-terminal ig like domain DUF2393 PF09624.5 gi|257387715|ref|YP_003177488.1| - 0.0009 18.7 0.4 0.19 11.2 0.0 4.0 5 0 0 5 5 5 1 Protein of unknown function (DUF2393) DUF4625 PF15418.1 gi|257387715|ref|YP_003177488.1| - 0.0048 17.0 0.2 0.76 9.9 0.0 3.6 3 0 0 3 3 3 1 Domain of unknown function (DUF4625) Arrestin_C PF02752.17 gi|257387715|ref|YP_003177488.1| - 0.0069 16.4 0.0 2 8.5 0.0 3.0 3 1 0 3 3 3 1 Arrestin (or S-antigen), C-terminal domain I-set PF07679.11 gi|257387715|ref|YP_003177488.1| - 0.039 13.8 5.7 3.3 7.6 0.0 5.4 5 1 1 6 6 6 0 Immunoglobulin I-set domain MMPL PF03176.10 gi|257387716|ref|YP_003177489.1| - 6.3e-33 113.8 31.2 3.5e-20 71.9 5.2 2.8 2 1 1 3 3 3 2 MMPL family Sterol-sensing PF12349.3 gi|257387716|ref|YP_003177489.1| - 2.1e-15 56.5 11.9 2.8e-08 33.3 1.3 2.6 2 0 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation Patched PF02460.13 gi|257387716|ref|YP_003177489.1| - 5.6e-14 51.0 23.5 5.3e-08 31.2 6.8 2.1 2 0 0 2 2 2 2 Patched family SecD_SecF PF02355.11 gi|257387716|ref|YP_003177489.1| - 3.7e-05 23.0 26.9 0.0014 17.8 7.6 2.4 2 0 0 2 2 2 2 Protein export membrane protein Pyr_redox_2 PF07992.9 gi|257387717|ref|YP_003177490.1| - 2.7e-24 86.1 0.1 3.7e-24 85.7 0.0 1.2 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|257387717|ref|YP_003177490.1| - 1.3e-13 50.9 0.0 3e-13 49.7 0.0 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_3 PF13738.1 gi|257387717|ref|YP_003177490.1| - 2.7e-10 40.6 0.3 7.4e-09 35.9 0.2 2.7 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|257387717|ref|YP_003177490.1| - 5.7e-08 33.0 0.3 3.6e-07 30.5 0.0 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.13 gi|257387717|ref|YP_003177490.1| - 3.6e-05 23.7 0.2 0.011 15.6 0.0 3.0 3 0 0 3 3 3 1 TrkA-N domain DAO PF01266.19 gi|257387717|ref|YP_003177490.1| - 0.0024 16.8 6.7 0.054 12.3 1.6 3.1 3 0 0 3 3 3 1 FAD dependent oxidoreductase Saccharop_dh PF03435.13 gi|257387717|ref|YP_003177490.1| - 0.0033 16.4 0.1 1.8 7.4 0.1 2.3 2 0 0 2 2 2 2 Saccharopine dehydrogenase ThiF PF00899.16 gi|257387717|ref|YP_003177490.1| - 0.006 16.4 0.4 0.57 9.9 0.0 2.6 2 0 0 2 2 2 1 ThiF family GIDA PF01134.17 gi|257387717|ref|YP_003177490.1| - 0.0071 15.2 2.3 1.1 8.0 0.0 2.8 2 1 0 2 2 2 2 Glucose inhibited division protein A Semialdhyde_dh PF01118.19 gi|257387717|ref|YP_003177490.1| - 0.02 15.1 0.5 4.2 7.7 0.1 3.2 3 0 0 3 3 3 0 Semialdehyde dehydrogenase, NAD binding domain NAD_binding_9 PF13454.1 gi|257387717|ref|YP_003177490.1| - 0.033 13.9 1.8 4.9 6.9 0.2 2.5 1 1 1 2 2 2 0 FAD-NAD(P)-binding NAD_binding_10 PF13460.1 gi|257387717|ref|YP_003177490.1| - 0.045 13.7 0.1 5.8 6.8 0.1 3.3 3 0 0 3 3 3 0 NADH(P)-binding HATPase_c PF02518.21 gi|257387718|ref|YP_003177491.1| - 1.2e-19 70.0 0.2 3.4e-19 68.5 0.0 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|257387718|ref|YP_003177491.1| - 2.8e-13 49.6 2.1 5.6e-13 48.6 0.4 2.4 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain GAF PF01590.21 gi|257387718|ref|YP_003177491.1| - 2e-12 47.5 0.0 8.2e-12 45.5 0.0 2.1 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.1 gi|257387718|ref|YP_003177491.1| - 2.2e-12 47.1 0.0 1.2e-11 44.7 0.0 2.2 2 0 0 2 2 2 1 GAF domain Response_reg PF00072.19 gi|257387718|ref|YP_003177491.1| - 7.2e-12 45.3 0.0 1.5e-11 44.2 0.0 1.5 1 0 0 1 1 1 1 Response regulator receiver domain PAS_4 PF08448.5 gi|257387718|ref|YP_003177491.1| - 3.6e-09 36.6 3.1 3.5e-08 33.4 0.6 2.8 2 0 0 2 2 2 1 PAS fold GAF_2 PF13185.1 gi|257387718|ref|YP_003177491.1| - 7.4e-09 36.2 0.1 2.6e-08 34.4 0.1 1.9 1 0 0 1 1 1 1 GAF domain PAS_9 PF13426.1 gi|257387718|ref|YP_003177491.1| - 3.4e-05 24.1 0.2 0.00015 22.0 0.0 2.2 2 0 0 2 2 2 1 PAS domain HATPase_c_3 PF13589.1 gi|257387718|ref|YP_003177491.1| - 0.008 15.8 0.0 0.016 14.8 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS PF00989.19 gi|257387718|ref|YP_003177491.1| - 0.059 13.1 0.0 0.23 11.2 0.0 2.0 1 1 0 1 1 1 0 PAS fold OrfB_Zn_ribbon PF07282.6 gi|257387719|ref|YP_003177492.1| - 3e-21 74.8 1.1 5.6e-21 73.9 0.8 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|257387719|ref|YP_003177492.1| - 1.1e-13 51.1 0.0 1.6e-13 50.6 0.0 1.2 1 0 0 1 1 1 1 Probable transposase IBR PF01485.16 gi|257387719|ref|YP_003177492.1| - 0.0072 16.1 0.6 0.015 15.1 0.4 1.5 1 0 0 1 1 1 1 IBR domain DUF2283 PF10049.4 gi|257387719|ref|YP_003177492.1| - 0.051 13.4 0.1 0.098 12.5 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2283) Usp PF00582.21 gi|257387720|ref|YP_003177493.1| - 3.3e-11 43.5 0.1 4e-11 43.2 0.1 1.0 1 0 0 1 1 1 1 Universal stress protein family 5-FTHF_cyc-lig PF01812.15 gi|257387721|ref|YP_003177494.1| - 2.9e-26 92.3 0.0 3.6e-26 92.0 0.0 1.1 1 0 0 1 1 1 1 5-formyltetrahydrofolate cyclo-ligase family Form_Nir_trans PF01226.12 gi|257387722|ref|YP_003177495.1| - 6.6e-51 172.6 17.1 8.5e-51 172.2 11.8 1.1 1 0 0 1 1 1 1 Formate/nitrite transporter Usp PF00582.21 gi|257387722|ref|YP_003177495.1| - 1.6e-08 34.8 5.1 6.2e-05 23.2 0.3 2.7 2 0 0 2 2 2 2 Universal stress protein family Pterin_bind PF00809.17 gi|257387722|ref|YP_003177495.1| - 0.11 11.8 0.0 0.21 10.9 0.0 1.3 1 0 0 1 1 1 0 Pterin binding enzyme DEAD PF00270.24 gi|257387723|ref|YP_003177496.1| - 9.8e-23 80.4 0.0 1.5e-22 79.9 0.0 1.3 1 0 0 1 1 1 1 DEAD/DEAH box helicase DUF1998 PF09369.5 gi|257387723|ref|YP_003177496.1| - 1.6e-17 63.8 0.1 3.9e-17 62.5 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF1998) Helicase_C PF00271.26 gi|257387723|ref|YP_003177496.1| - 2e-09 37.2 0.2 4.5e-08 32.8 0.0 2.6 3 0 0 3 3 3 1 Helicase conserved C-terminal domain SecA_DEAD PF07517.9 gi|257387723|ref|YP_003177496.1| - 0.022 14.0 0.0 0.033 13.4 0.0 1.2 1 0 0 1 1 1 0 SecA DEAD-like domain DUF4136 PF13590.1 gi|257387723|ref|YP_003177496.1| - 0.077 13.0 0.6 0.15 12.0 0.1 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4136) HTH_10 PF04967.7 gi|257387724|ref|YP_003177497.1| - 1e-19 69.8 0.0 1.8e-19 69.0 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain MarR_2 PF12802.2 gi|257387724|ref|YP_003177497.1| - 0.00019 20.9 0.0 0.023 14.3 0.0 2.6 2 1 0 2 2 2 1 MarR family HTH_24 PF13412.1 gi|257387724|ref|YP_003177497.1| - 0.00071 18.9 0.0 0.002 17.4 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|257387724|ref|YP_003177497.1| - 0.0035 16.8 0.7 0.063 12.8 0.0 2.6 3 0 0 3 3 3 1 IclR helix-turn-helix domain DNA_photolyase PF00875.13 gi|257387724|ref|YP_003177497.1| - 0.0084 15.8 0.0 0.012 15.3 0.0 1.2 1 0 0 1 1 1 1 DNA photolyase UPF0122 PF04297.9 gi|257387724|ref|YP_003177497.1| - 0.016 15.1 0.0 0.028 14.4 0.0 1.4 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_AsnC-type PF13404.1 gi|257387724|ref|YP_003177497.1| - 0.027 14.0 0.1 0.068 12.7 0.1 1.7 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_35 PF13693.1 gi|257387724|ref|YP_003177497.1| - 0.11 12.2 0.0 0.31 10.8 0.0 1.7 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Polyketide_cyc2 PF10604.4 gi|257387725|ref|YP_003177498.1| - 4.3e-05 23.6 0.7 6.2e-05 23.1 0.5 1.2 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport DUF2505 PF10698.4 gi|257387725|ref|YP_003177498.1| - 0.0048 16.4 0.0 0.97 8.9 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF2505) Radical_SAM PF04055.16 gi|257387727|ref|YP_003177500.1| - 1.1e-18 67.9 0.0 1.5e-18 67.4 0.0 1.2 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|257387727|ref|YP_003177500.1| - 7.4e-05 22.8 0.0 0.00011 22.2 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|257387727|ref|YP_003177500.1| - 0.00016 21.6 0.0 0.00029 20.8 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain TP_methylase PF00590.15 gi|257387727|ref|YP_003177500.1| - 0.00098 18.8 0.3 0.0079 15.9 0.0 2.5 2 1 1 3 3 3 1 Tetrapyrrole (Corrin/Porphyrin) Methylases DAGK_cat PF00781.19 gi|257387727|ref|YP_003177500.1| - 0.074 12.4 0.0 0.13 11.6 0.0 1.3 1 0 0 1 1 1 0 Diacylglycerol kinase catalytic domain DUF1906 PF08924.6 gi|257387727|ref|YP_003177500.1| - 0.11 12.3 0.0 0.19 11.6 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1906) HTH_10 PF04967.7 gi|257387728|ref|YP_003177501.1| - 4.5e-20 70.9 0.1 7.2e-20 70.3 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain HTH_20 PF12840.2 gi|257387728|ref|YP_003177501.1| - 0.00075 19.2 0.2 0.011 15.5 0.0 2.5 3 0 0 3 3 3 1 Helix-turn-helix domain GerE PF00196.14 gi|257387728|ref|YP_003177501.1| - 0.0041 16.3 0.2 0.036 13.3 0.1 2.0 1 1 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4 PF04545.11 gi|257387728|ref|YP_003177501.1| - 0.01 15.1 0.0 0.021 14.1 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_5 PF01022.15 gi|257387728|ref|YP_003177501.1| - 0.015 14.9 0.0 0.039 13.6 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Secretogranin_V PF05281.6 gi|257387728|ref|YP_003177501.1| - 0.016 14.5 1.4 0.026 13.9 0.5 1.7 1 1 1 2 2 2 0 Neuroendocrine protein 7B2 precursor (Secretogranin V) HTH_22 PF13309.1 gi|257387728|ref|YP_003177501.1| - 0.026 14.2 0.0 0.076 12.7 0.0 1.8 2 0 0 2 2 2 0 HTH domain Sigma70_r4_2 PF08281.7 gi|257387728|ref|YP_003177501.1| - 0.056 12.9 0.4 3 7.3 0.0 2.6 3 0 0 3 3 3 0 Sigma-70, region 4 LexA_DNA_bind PF01726.11 gi|257387728|ref|YP_003177501.1| - 0.061 12.8 0.1 0.19 11.3 0.1 1.8 1 1 0 1 1 1 0 LexA DNA binding domain MerR PF00376.18 gi|257387728|ref|YP_003177501.1| - 0.085 12.4 0.0 0.24 10.9 0.0 1.8 1 0 0 1 1 1 0 MerR family regulatory protein SHOCT PF09851.4 gi|257387730|ref|YP_003177503.1| - 3.7e-08 32.5 4.5 3.7e-08 32.5 3.1 2.0 2 0 0 2 2 2 1 Short C-terminal domain DUF1707 PF08044.6 gi|257387730|ref|YP_003177503.1| - 0.0013 18.4 5.1 0.0029 17.3 3.1 1.9 1 1 1 2 2 2 1 Domain of unknown function (DUF1707) GvpG PF05120.7 gi|257387730|ref|YP_003177503.1| - 0.021 14.5 6.7 0.034 13.9 4.7 1.3 1 0 0 1 1 1 0 Gas vesicle protein G DUF3099 PF11298.3 gi|257387730|ref|YP_003177503.1| - 0.049 13.3 0.0 0.084 12.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3099) Hexapep PF00132.19 gi|257387731|ref|YP_003177504.1| - 1.1e-12 46.7 2.5 1.8e-08 33.5 0.2 3.2 3 0 0 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|257387731|ref|YP_003177504.1| - 5e-10 38.7 1.8 1.2e-05 24.7 0.0 3.2 3 0 0 3 3 3 2 Hexapeptide repeat of succinyl-transferase Amino_oxidase PF01593.19 gi|257387732|ref|YP_003177505.1| - 4.6e-25 88.5 0.7 7.4e-25 87.9 0.5 1.3 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.1 gi|257387732|ref|YP_003177505.1| - 2.2e-15 56.4 2.8 3.7e-15 55.7 0.5 2.4 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|257387732|ref|YP_003177505.1| - 9.3e-14 51.0 5.6 2.7e-07 29.8 0.1 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|257387732|ref|YP_003177505.1| - 3.1e-08 33.9 1.2 0.0087 16.1 0.4 2.9 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|257387732|ref|YP_003177505.1| - 1.4e-07 31.8 2.1 0.00014 22.2 0.7 2.8 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|257387732|ref|YP_003177505.1| - 3.4e-06 25.7 0.1 0.012 14.1 0.1 2.1 2 0 0 2 2 2 2 HI0933-like protein Pyr_redox_2 PF07992.9 gi|257387732|ref|YP_003177505.1| - 1.3e-05 25.1 0.2 9.9e-05 22.3 0.3 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|257387732|ref|YP_003177505.1| - 1.9e-05 23.9 0.0 5.1e-05 22.5 0.0 1.7 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|257387732|ref|YP_003177505.1| - 2.2e-05 23.6 0.8 5e-05 22.5 0.5 1.6 1 0 0 1 1 1 1 FAD binding domain FAD_binding_2 PF00890.19 gi|257387732|ref|YP_003177505.1| - 0.00012 21.0 2.2 0.00012 21.0 1.5 1.7 2 0 0 2 2 2 1 FAD binding domain Thi4 PF01946.12 gi|257387732|ref|YP_003177505.1| - 0.0011 18.0 0.3 0.0021 17.1 0.2 1.3 1 0 0 1 1 1 1 Thi4 family GIDA PF01134.17 gi|257387732|ref|YP_003177505.1| - 0.0016 17.4 1.4 0.0026 16.6 0.9 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A 3HCDH_N PF02737.13 gi|257387732|ref|YP_003177505.1| - 0.3 10.7 0.9 0.54 9.8 0.6 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Trp_halogenase PF04820.9 gi|257387732|ref|YP_003177505.1| - 1.1 7.7 3.8 0.73 8.3 0.3 2.0 2 0 0 2 2 2 0 Tryptophan halogenase BCD PF15461.1 gi|257387733|ref|YP_003177506.1| - 3.9e-66 223.1 19.5 5.4e-66 222.6 13.5 1.2 1 0 0 1 1 1 1 Beta-carotene 15,15'-dioxygenase PH_6 PF15406.1 gi|257387734|ref|YP_003177507.1| - 0.08 13.0 0.0 0.17 11.9 0.0 1.5 1 0 0 1 1 1 0 Pleckstrin homology domain GAF PF01590.21 gi|257387735|ref|YP_003177508.1| - 6.2e-09 36.1 0.5 1.5e-08 34.8 0.1 1.8 2 0 0 2 2 2 1 GAF domain GAF_3 PF13492.1 gi|257387735|ref|YP_003177508.1| - 8.5e-08 32.3 0.1 1.7e-07 31.3 0.1 1.5 1 0 0 1 1 1 1 GAF domain GAF_2 PF13185.1 gi|257387735|ref|YP_003177508.1| - 0.00042 20.8 0.6 0.0016 18.9 0.1 2.0 1 1 1 2 2 2 1 GAF domain TFIIB PF00382.14 gi|257387736|ref|YP_003177509.1| - 0.025 14.3 0.1 3 7.7 0.0 3.4 3 0 0 3 3 3 0 Transcription factor TFIIB repeat BPD_transp_1 PF00528.17 gi|257387737|ref|YP_003177510.1| - 5.2e-16 58.6 8.2 5.2e-16 58.6 5.7 1.8 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|257387738|ref|YP_003177511.1| - 3e-32 111.7 0.0 3.7e-32 111.4 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|257387738|ref|YP_003177511.1| - 2.8e-15 57.0 0.0 1e-07 32.2 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|257387738|ref|YP_003177511.1| - 2.5e-07 30.1 0.0 0.00014 21.1 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|257387738|ref|YP_003177511.1| - 8.1e-05 22.0 0.0 0.00015 21.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|257387738|ref|YP_003177511.1| - 0.00019 21.4 0.1 0.00042 20.3 0.1 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.1 gi|257387738|ref|YP_003177511.1| - 0.00056 19.0 0.0 0.046 12.7 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain DUF258 PF03193.11 gi|257387738|ref|YP_003177511.1| - 0.0015 17.7 0.0 0.002 17.3 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_23 PF13476.1 gi|257387738|ref|YP_003177511.1| - 0.0015 18.8 0.0 0.0022 18.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|257387738|ref|YP_003177511.1| - 0.0021 17.5 0.0 0.0039 16.6 0.0 1.4 1 0 0 1 1 1 1 AAA-like domain ABC_ATPase PF09818.4 gi|257387738|ref|YP_003177511.1| - 0.0021 16.6 0.0 0.46 9.0 0.0 2.1 2 0 0 2 2 2 2 Predicted ATPase of the ABC class AAA_30 PF13604.1 gi|257387738|ref|YP_003177511.1| - 0.0024 17.4 0.0 0.0038 16.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain Arch_ATPase PF01637.13 gi|257387738|ref|YP_003177511.1| - 0.0062 16.2 0.0 0.012 15.3 0.0 1.6 2 0 0 2 2 2 1 Archaeal ATPase AAA_22 PF13401.1 gi|257387738|ref|YP_003177511.1| - 0.0097 16.0 0.0 0.023 14.8 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|257387738|ref|YP_003177511.1| - 0.01 16.6 0.0 0.02 15.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.1 gi|257387738|ref|YP_003177511.1| - 0.012 15.5 0.2 0.13 12.2 0.1 2.5 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_33 PF13671.1 gi|257387738|ref|YP_003177511.1| - 0.014 15.2 0.0 0.019 14.8 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_19 PF13245.1 gi|257387738|ref|YP_003177511.1| - 0.015 15.0 0.0 0.033 13.9 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain AAA_18 PF13238.1 gi|257387738|ref|YP_003177511.1| - 0.017 15.4 0.0 0.036 14.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|257387738|ref|YP_003177511.1| - 0.02 14.0 0.0 0.029 13.4 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin AAA_25 PF13481.1 gi|257387738|ref|YP_003177511.1| - 0.024 14.0 0.3 0.24 10.7 0.2 2.5 1 1 0 1 1 1 0 AAA domain MobB PF03205.9 gi|257387738|ref|YP_003177511.1| - 0.035 13.8 0.1 0.062 13.0 0.0 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_13 PF13166.1 gi|257387738|ref|YP_003177511.1| - 0.035 12.5 0.0 3.1 6.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.18 gi|257387738|ref|YP_003177511.1| - 0.059 13.3 0.0 0.13 12.1 0.0 1.6 1 1 0 1 1 1 0 50S ribosome-binding GTPase NACHT PF05729.7 gi|257387738|ref|YP_003177511.1| - 0.088 12.4 0.0 0.14 11.7 0.0 1.3 1 0 0 1 1 1 0 NACHT domain AAA_5 PF07728.9 gi|257387738|ref|YP_003177511.1| - 0.14 11.9 0.0 0.49 10.1 0.0 1.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_14 PF13173.1 gi|257387738|ref|YP_003177511.1| - 0.16 11.8 0.0 0.36 10.7 0.0 1.6 2 0 0 2 2 2 0 AAA domain eIF-4B PF06273.6 gi|257387738|ref|YP_003177511.1| - 0.18 10.5 0.0 0.24 10.1 0.0 1.1 1 0 0 1 1 1 0 Plant specific eukaryotic initiation factor 4B BPD_transp_1 PF00528.17 gi|257387739|ref|YP_003177512.1| - 1.1e-18 67.4 6.9 1.1e-18 67.4 4.8 1.5 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_3 PF00497.15 gi|257387740|ref|YP_003177513.1| - 1e-54 185.1 0.0 1.2e-54 184.9 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 NMT1 PF09084.6 gi|257387740|ref|YP_003177513.1| - 3.5e-05 23.4 0.0 0.00017 21.2 0.0 1.8 2 0 0 2 2 2 1 NMT1/THI5 like TAT_signal PF10518.4 gi|257387740|ref|YP_003177513.1| - 0.11 12.5 0.4 0.25 11.4 0.3 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DZR PF12773.2 gi|257387741|ref|YP_003177514.1| - 0.068 12.9 0.2 0.13 12.0 0.2 1.4 1 0 0 1 1 1 0 Double zinc ribbon Rep_fac-A_3 PF08661.6 gi|257387741|ref|YP_003177514.1| - 0.13 12.1 0.0 0.22 11.4 0.0 1.4 1 0 0 1 1 1 0 Replication factor A protein 3 MIP-T3 PF10243.4 gi|257387741|ref|YP_003177514.1| - 0.7 8.2 8.7 0.94 7.8 6.0 1.1 1 0 0 1 1 1 0 Microtubule-binding protein MIP-T3 Acetyltransf_1 PF00583.19 gi|257387742|ref|YP_003177515.1| - 6.2e-10 38.9 0.0 8.9e-10 38.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|257387742|ref|YP_003177515.1| - 5.4e-07 29.7 0.0 6.5e-07 29.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|257387742|ref|YP_003177515.1| - 1.7e-05 25.0 0.0 2.1e-05 24.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|257387742|ref|YP_003177515.1| - 2.3e-05 24.4 0.0 3.2e-05 23.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|257387742|ref|YP_003177515.1| - 9.7e-05 22.2 0.1 0.00011 22.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|257387742|ref|YP_003177515.1| - 0.0081 16.1 0.0 0.0099 15.8 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|257387742|ref|YP_003177515.1| - 0.11 12.3 0.3 0.22 11.4 0.2 1.7 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain NIF3 PF01784.13 gi|257387743|ref|YP_003177516.1| - 3.1e-54 184.0 0.0 3.7e-54 183.8 0.0 1.0 1 0 0 1 1 1 1 NIF3 (NGG1p interacting factor 3) Usp PF00582.21 gi|257387743|ref|YP_003177516.1| - 0.0012 18.9 1.4 0.37 10.9 0.1 2.2 2 0 0 2 2 2 2 Universal stress protein family Glyoxalase_4 PF13669.1 gi|257387743|ref|YP_003177516.1| - 0.0041 17.1 1.3 0.011 15.6 0.1 2.2 2 1 0 2 2 2 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AP_endonuc_2 PF01261.19 gi|257387743|ref|YP_003177516.1| - 0.0089 15.3 0.2 0.03 13.6 0.0 2.0 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel PGA_cap PF09587.5 gi|257387743|ref|YP_003177516.1| - 0.061 12.6 0.3 0.061 12.6 0.2 1.7 2 1 0 2 2 2 0 Bacterial capsule synthesis protein PGA_cap SprT-like PF10263.4 gi|257387744|ref|YP_003177517.1| - 3.5e-08 33.2 2.4 4.8e-08 32.8 1.7 1.3 1 0 0 1 1 1 1 SprT-like family HTH_24 PF13412.1 gi|257387745|ref|YP_003177518.1| - 0.0002 20.6 0.0 0.00023 20.4 0.0 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|257387745|ref|YP_003177518.1| - 0.012 15.1 0.1 0.023 14.2 0.0 1.5 1 1 1 2 2 2 0 AsnC-type helix-turn-helix domain HTH_17 PF12728.2 gi|257387745|ref|YP_003177518.1| - 0.074 13.3 0.0 0.12 12.6 0.0 1.4 1 1 0 1 1 1 0 Helix-turn-helix domain Dimerisation PF08100.6 gi|257387745|ref|YP_003177518.1| - 0.075 12.8 0.1 0.11 12.3 0.1 1.2 1 0 0 1 1 1 0 Dimerisation domain DUF2042 PF09743.4 gi|257387745|ref|YP_003177518.1| - 0.12 11.7 0.0 0.13 11.5 0.0 1.0 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2042) HTH_20 PF12840.2 gi|257387745|ref|YP_003177518.1| - 0.12 12.2 0.0 0.14 12.0 0.0 1.1 1 0 0 1 1 1 0 Helix-turn-helix domain DUF4145 PF13643.1 gi|257387746|ref|YP_003177519.1| - 0.017 14.9 0.7 0.037 13.8 0.5 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4145) DUF86 PF01934.12 gi|257387746|ref|YP_003177519.1| - 0.02 14.5 1.5 0.25 10.9 0.1 2.5 2 0 0 2 2 2 0 Protein of unknown function DUF86 Phage_integrase PF00589.17 gi|257387747|ref|YP_003177520.1| - 1.4e-07 31.3 0.0 5.8e-07 29.3 0.0 2.0 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.12 gi|257387747|ref|YP_003177520.1| - 1.7e-05 24.8 0.3 4.9e-05 23.4 0.2 1.8 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Nudix_N_2 PF14803.1 gi|257387748|ref|YP_003177521.1| - 0.011 15.3 0.9 1.7 8.3 0.1 2.5 2 0 0 2 2 2 0 Nudix N-terminal zinc_ribbon_5 PF13719.1 gi|257387748|ref|YP_003177521.1| - 0.038 13.5 0.5 0.099 12.2 0.1 1.9 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|257387748|ref|YP_003177521.1| - 0.051 13.2 0.5 0.14 11.8 0.1 1.9 2 0 0 2 2 2 0 zinc-ribbon domain Prok-RING_1 PF14446.1 gi|257387748|ref|YP_003177521.1| - 0.074 12.7 2.0 0.13 11.9 1.4 1.3 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 HTH_45 PF14947.1 gi|257387750|ref|YP_003177523.1| - 0.0011 18.6 0.0 0.0015 18.3 0.0 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix MarR_2 PF12802.2 gi|257387750|ref|YP_003177523.1| - 0.0016 18.0 0.0 0.0023 17.5 0.0 1.3 1 0 0 1 1 1 1 MarR family Mrr_N PF14338.1 gi|257387750|ref|YP_003177523.1| - 0.0052 16.8 0.0 0.0082 16.2 0.0 1.3 1 1 0 1 1 1 1 Mrr N-terminal domain HTH_24 PF13412.1 gi|257387750|ref|YP_003177523.1| - 0.016 14.6 0.3 0.35 10.2 0.2 2.3 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|257387750|ref|YP_003177523.1| - 0.035 14.4 0.0 0.059 13.7 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_11 PF08279.7 gi|257387750|ref|YP_003177523.1| - 0.045 13.4 0.2 0.071 12.7 0.1 1.5 1 1 0 1 1 1 0 HTH domain DUF2250 PF10007.4 gi|257387750|ref|YP_003177523.1| - 0.067 13.1 0.0 0.092 12.6 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_12 PF08461.5 gi|257387750|ref|YP_003177523.1| - 0.14 11.9 0.4 0.19 11.4 0.3 1.4 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_AsnC-type PF13404.1 gi|257387751|ref|YP_003177524.1| - 0.045 13.3 0.0 0.06 12.8 0.0 1.2 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Hypoth_Ymh PF09509.5 gi|257387752|ref|YP_003177525.1| - 1.4e-13 50.5 0.0 2.4e-13 49.8 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (Hypoth_ymh) DUF4031 PF13223.1 gi|257387752|ref|YP_003177525.1| - 0.062 13.4 0.1 0.12 12.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF4031) DDE_Tnp_IS1595 PF12762.2 gi|257387753|ref|YP_003177526.1| - 1.1e-23 83.7 0.0 1.5e-23 83.2 0.0 1.2 1 0 0 1 1 1 1 ISXO2-like transposase domain Zn_Tnp_IS1595 PF12760.2 gi|257387753|ref|YP_003177526.1| - 4e-10 39.3 0.9 8.8e-10 38.2 0.6 1.6 1 0 0 1 1 1 1 Transposase zinc-ribbon domain DUF2089 PF09862.4 gi|257387753|ref|YP_003177526.1| - 4.5e-06 26.4 0.0 6.5e-06 25.9 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2089) Zn_Tnp_IS1 PF03811.8 gi|257387753|ref|YP_003177526.1| - 0.00014 21.2 3.9 0.00045 19.6 2.7 1.8 1 0 0 1 1 1 1 InsA N-terminal domain HTH_23 PF13384.1 gi|257387753|ref|YP_003177526.1| - 0.0023 17.5 0.0 0.0077 15.8 0.0 1.9 1 0 0 1 1 1 1 Homeodomain-like domain ADK_lid PF05191.9 gi|257387753|ref|YP_003177526.1| - 0.014 15.0 0.1 0.014 15.0 0.1 2.1 2 0 0 2 2 2 0 Adenylate kinase, active site lid HTH_29 PF13551.1 gi|257387753|ref|YP_003177526.1| - 0.032 14.3 0.0 0.14 12.3 0.0 2.0 2 0 0 2 2 2 0 Winged helix-turn helix HTH_28 PF13518.1 gi|257387753|ref|YP_003177526.1| - 0.035 14.1 0.1 0.22 11.5 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain Prok-RING_1 PF14446.1 gi|257387753|ref|YP_003177526.1| - 0.042 13.5 0.3 1.2 8.8 0.0 2.2 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 zinc-ribbons_6 PF07191.7 gi|257387753|ref|YP_003177526.1| - 0.052 13.3 0.1 0.1 12.3 0.1 1.5 1 0 0 1 1 1 0 zinc-ribbons Zn-ribbon_8 PF09723.5 gi|257387753|ref|YP_003177526.1| - 0.054 13.4 2.1 11 6.1 0.3 2.7 2 0 0 2 2 2 0 Zinc ribbon domain HTH_11 PF08279.7 gi|257387753|ref|YP_003177526.1| - 0.071 12.7 0.0 0.14 11.8 0.0 1.5 1 0 0 1 1 1 0 HTH domain GerE PF00196.14 gi|257387753|ref|YP_003177526.1| - 0.076 12.3 0.0 0.19 11.0 0.0 1.6 2 0 0 2 2 1 0 Bacterial regulatory proteins, luxR family Sigma70_r4_2 PF08281.7 gi|257387753|ref|YP_003177526.1| - 0.082 12.3 0.0 0.25 10.8 0.0 1.8 1 0 0 1 1 1 0 Sigma-70, region 4 zf-C4_Topoisom PF01396.14 gi|257387753|ref|YP_003177526.1| - 0.094 12.2 1.0 0.19 11.2 0.7 1.5 1 0 0 1 1 1 0 Topoisomerase DNA binding C4 zinc finger HNH_5 PF14279.1 gi|257387753|ref|YP_003177526.1| - 0.096 12.6 0.1 0.21 11.6 0.0 1.6 1 0 0 1 1 1 0 HNH endonuclease zf-C2HC_2 PF13913.1 gi|257387753|ref|YP_003177526.1| - 0.11 12.1 0.6 0.11 12.1 0.4 2.4 2 0 0 2 2 2 0 zinc-finger of a C2HC-type Auxin_inducible PF02519.9 gi|257387753|ref|YP_003177526.1| - 0.13 12.2 0.0 0.25 11.4 0.0 1.4 1 0 0 1 1 1 0 Auxin responsive protein zf-Dof PF02701.10 gi|257387753|ref|YP_003177526.1| - 0.17 11.8 3.9 0.33 10.9 2.7 1.4 1 0 0 1 1 1 0 Dof domain, zinc finger zf-ISL3 PF14690.1 gi|257387753|ref|YP_003177526.1| - 0.46 10.5 5.1 9.9 6.2 0.1 2.8 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-C2H2_6 PF13912.1 gi|257387753|ref|YP_003177526.1| - 0.72 9.8 4.2 0.44 10.5 0.2 2.2 2 0 0 2 2 2 0 C2H2-type zinc finger Zn_ribbon_recom PF13408.1 gi|257387753|ref|YP_003177526.1| - 2.3 8.5 5.6 5.9 7.2 3.9 1.8 1 1 0 1 1 1 0 Recombinase zinc beta ribbon domain Gp49 PF05973.9 gi|257387755|ref|YP_003177528.1| - 0.01 15.8 0.1 0.016 15.2 0.0 1.3 1 1 0 1 1 1 0 Phage derived protein Gp49-like (DUF891) Phage_integrase PF00589.17 gi|257387756|ref|YP_003177529.1| - 4.3e-18 65.5 0.0 5.2e-18 65.3 0.0 1.1 1 0 0 1 1 1 1 Phage integrase family Integrase_1 PF12835.2 gi|257387756|ref|YP_003177529.1| - 2.4e-11 43.7 0.1 3.2e-11 43.3 0.0 1.1 1 0 0 1 1 1 1 Integrase PIN PF01850.16 gi|257387757|ref|YP_003177530.1| - 1.7e-10 41.2 0.0 2e-10 41.0 0.0 1.0 1 0 0 1 1 1 1 PIN domain UPF0302 PF08864.5 gi|257387757|ref|YP_003177530.1| - 0.033 14.0 0.0 0.056 13.2 0.0 1.3 1 0 0 1 1 1 0 UPF0302 domain Antitoxin-MazE PF04014.13 gi|257387758|ref|YP_003177531.1| - 3.5e-08 33.0 0.2 4.6e-08 32.5 0.2 1.2 1 0 0 1 1 1 1 Antidote-toxin recognition MazE Psu PF07455.6 gi|257387758|ref|YP_003177531.1| - 0.13 11.7 0.0 0.15 11.5 0.0 1.0 1 0 0 1 1 1 0 Phage polarity suppression protein (Psu) Tad PF13400.1 gi|257387760|ref|YP_003177533.1| - 0.11 12.5 1.3 0.18 11.8 0.9 1.3 1 0 0 1 1 1 0 Putative Flp pilus-assembly TadE/G-like DUF1206 PF06724.6 gi|257387761|ref|YP_003177534.1| - 0.34 10.7 7.1 0.049 13.3 1.3 2.3 1 1 1 2 2 2 0 Domain of Unknown Function (DUF1206) Tape_meas_lam_C PF09718.5 gi|257387761|ref|YP_003177534.1| - 5 7.1 14.5 9.1 6.2 0.1 3.3 2 1 1 3 3 3 0 Lambda phage tail tape-measure protein (Tape_meas_lam_C) DUF566 PF04484.7 gi|257387763|ref|YP_003177536.1| - 1.5 8.2 6.3 1.7 8.0 4.4 1.0 1 0 0 1 1 1 0 Family of unknown function (DUF566) Pheromone PF08015.6 gi|257387763|ref|YP_003177536.1| - 9.1 7.1 9.2 15 6.4 6.0 1.8 1 1 0 1 1 1 0 Fungal mating-type pheromone AAA_10 PF12846.2 gi|257387771|ref|YP_003177544.1| - 3.6e-11 43.0 0.0 2.3e-05 23.9 0.0 2.1 1 1 0 2 2 2 2 AAA-like domain DUF853 PF05872.7 gi|257387771|ref|YP_003177544.1| - 0.066 11.5 0.0 6.1 5.0 0.0 2.0 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF853) DUF2146 PF10220.4 gi|257387774|ref|YP_003177547.1| - 1.1 7.1 5.9 1.2 6.9 4.1 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2146) DUF3357 PF11837.3 gi|257387775|ref|YP_003177548.1| - 0.032 14.0 0.8 0.12 12.2 0.0 2.2 1 1 2 3 3 3 0 Domain of unknown function (DUF3357) Daxx PF03344.10 gi|257387775|ref|YP_003177548.1| - 1.3 7.3 19.3 1.6 7.1 13.4 1.1 1 0 0 1 1 1 0 Daxx Family BUD22 PF09073.5 gi|257387775|ref|YP_003177548.1| - 8.4 5.3 19.2 12 4.8 13.3 1.3 1 1 0 1 1 1 0 BUD22 DUF421 PF04239.7 gi|257387777|ref|YP_003177550.1| - 0.037 13.5 0.0 0.051 13.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF421) DNA_methylase PF00145.12 gi|257387778|ref|YP_003177551.1| - 1.2e-10 41.0 0.0 2.2e-10 40.1 0.0 1.4 1 1 0 1 1 1 1 C-5 cytosine-specific DNA methylase Methyltransf_26 PF13659.1 gi|257387778|ref|YP_003177551.1| - 0.0021 18.0 0.1 0.017 15.1 0.1 2.1 1 1 0 1 1 1 1 Methyltransferase domain FtsJ PF01728.14 gi|257387778|ref|YP_003177551.1| - 0.061 13.3 0.0 0.093 12.7 0.0 1.3 1 0 0 1 1 1 0 FtsJ-like methyltransferase RHH_1 PF01402.16 gi|257387779|ref|YP_003177552.1| - 0.00032 20.4 0.0 0.00074 19.3 0.0 1.6 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family GST_C_2 PF13410.1 gi|257387779|ref|YP_003177552.1| - 0.043 13.6 1.1 0.084 12.7 0.8 1.5 1 1 0 1 1 1 0 Glutathione S-transferase, C-terminal domain DUF1127 PF06568.6 gi|257387780|ref|YP_003177553.1| - 1.3 8.5 7.4 0.15 11.5 1.5 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1127) TruB_N PF01509.13 gi|257387781|ref|YP_003177554.1| - 3.4e-21 75.9 0.1 3.1e-11 43.6 0.0 3.1 1 1 1 2 2 2 2 TruB family pseudouridylate synthase (N terminal domain) DKCLD PF08068.7 gi|257387781|ref|YP_003177554.1| - 2.9e-08 33.5 0.0 6.5e-08 32.3 0.0 1.6 1 0 0 1 1 1 1 DKCLD (NUC011) domain PUA PF01472.15 gi|257387781|ref|YP_003177554.1| - 2.9e-06 26.8 0.5 6.5e-06 25.7 0.3 1.7 1 0 0 1 1 1 1 PUA domain Cytidylate_kin2 PF13189.1 gi|257387782|ref|YP_003177555.1| - 6.5e-23 81.5 1.6 3.6e-21 75.8 1.1 2.0 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_17 PF13207.1 gi|257387782|ref|YP_003177555.1| - 7e-17 62.3 1.1 1.2e-16 61.6 0.8 1.5 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|257387782|ref|YP_003177555.1| - 7.7e-17 61.8 0.1 1.1e-16 61.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|257387782|ref|YP_003177555.1| - 4.7e-11 42.7 0.4 1.4e-09 37.9 0.3 2.1 1 1 0 1 1 1 1 AAA domain ADK PF00406.17 gi|257387782|ref|YP_003177555.1| - 3.1e-06 27.1 0.1 7.9e-06 25.8 0.0 1.6 1 1 1 2 2 2 1 Adenylate kinase SKI PF01202.17 gi|257387782|ref|YP_003177555.1| - 6.4e-06 26.1 0.9 3.7e-05 23.6 0.6 2.0 1 1 0 1 1 1 1 Shikimate kinase AAA_28 PF13521.1 gi|257387782|ref|YP_003177555.1| - 7.3e-05 22.7 0.1 0.00015 21.7 0.0 1.6 2 0 0 2 2 2 1 AAA domain Cytidylate_kin PF02224.13 gi|257387782|ref|YP_003177555.1| - 0.00014 21.3 0.2 0.0002 20.8 0.2 1.2 1 0 0 1 1 1 1 Cytidylate kinase AAA_22 PF13401.1 gi|257387782|ref|YP_003177555.1| - 0.00029 20.9 0.0 0.00042 20.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain CoaE PF01121.15 gi|257387782|ref|YP_003177555.1| - 0.00044 19.7 0.7 0.012 15.0 0.0 2.1 1 1 1 2 2 2 1 Dephospho-CoA kinase AAA_16 PF13191.1 gi|257387782|ref|YP_003177555.1| - 0.00046 20.2 2.0 0.001 19.1 1.4 1.6 1 1 0 1 1 1 1 AAA ATPase domain NACHT PF05729.7 gi|257387782|ref|YP_003177555.1| - 0.00058 19.5 0.0 0.0008 19.1 0.0 1.4 1 0 0 1 1 1 1 NACHT domain AAA PF00004.24 gi|257387782|ref|YP_003177555.1| - 0.004 17.3 0.0 0.0062 16.7 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Thymidylate_kin PF02223.12 gi|257387782|ref|YP_003177555.1| - 0.0042 16.4 0.3 2.7 7.3 0.0 2.2 1 1 0 2 2 2 2 Thymidylate kinase AAA_25 PF13481.1 gi|257387782|ref|YP_003177555.1| - 0.006 16.0 0.8 0.01 15.2 0.6 1.5 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|257387782|ref|YP_003177555.1| - 0.0065 16.2 0.0 0.012 15.2 0.0 1.6 1 0 0 1 1 1 1 Part of AAA domain PRK PF00485.13 gi|257387782|ref|YP_003177555.1| - 0.01 15.4 0.4 0.1 12.1 0.0 2.1 1 1 0 2 2 2 1 Phosphoribulokinase / Uridine kinase family RNA_helicase PF00910.17 gi|257387782|ref|YP_003177555.1| - 0.011 15.8 0.0 0.018 15.2 0.0 1.4 1 0 0 1 1 1 0 RNA helicase DUF2075 PF09848.4 gi|257387782|ref|YP_003177555.1| - 0.012 14.6 0.0 0.016 14.1 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) KTI12 PF08433.5 gi|257387782|ref|YP_003177555.1| - 0.014 14.6 0.0 0.02 14.0 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_30 PF13604.1 gi|257387782|ref|YP_003177555.1| - 0.031 13.8 1.6 0.48 9.9 0.1 2.3 1 1 1 2 2 2 0 AAA domain CbiA PF01656.18 gi|257387782|ref|YP_003177555.1| - 0.031 13.6 0.6 0.044 13.1 0.4 1.6 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain ABC_tran PF00005.22 gi|257387782|ref|YP_003177555.1| - 0.033 14.4 0.0 0.041 14.1 0.0 1.4 1 1 0 1 1 1 0 ABC transporter CobU PF02283.11 gi|257387782|ref|YP_003177555.1| - 0.039 13.3 0.4 0.1 11.9 0.0 1.7 2 0 0 2 2 2 0 Cobinamide kinase / cobinamide phosphate guanyltransferase MobB PF03205.9 gi|257387782|ref|YP_003177555.1| - 0.046 13.4 0.0 0.07 12.8 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_29 PF13555.1 gi|257387782|ref|YP_003177555.1| - 0.047 13.2 0.2 0.089 12.3 0.2 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain NTPase_1 PF03266.10 gi|257387782|ref|YP_003177555.1| - 0.053 13.2 0.0 0.08 12.6 0.0 1.3 1 0 0 1 1 1 0 NTPase T2SE PF00437.15 gi|257387782|ref|YP_003177555.1| - 0.054 12.3 0.5 0.089 11.6 0.3 1.6 1 1 0 1 1 1 0 Type II/IV secretion system protein AAA_14 PF13173.1 gi|257387782|ref|YP_003177555.1| - 0.06 13.2 0.0 0.093 12.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|257387782|ref|YP_003177555.1| - 0.064 12.6 0.1 0.12 11.8 0.0 1.4 1 0 0 1 1 1 0 AAA-like domain NB-ARC PF00931.17 gi|257387782|ref|YP_003177555.1| - 0.075 11.8 0.0 0.093 11.5 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain APS_kinase PF01583.15 gi|257387782|ref|YP_003177555.1| - 0.079 12.6 0.0 0.17 11.5 0.0 1.6 2 0 0 2 2 1 0 Adenylylsulphate kinase Arch_ATPase PF01637.13 gi|257387782|ref|YP_003177555.1| - 0.085 12.5 0.0 0.092 12.4 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase ATP_bind_1 PF03029.12 gi|257387782|ref|YP_003177555.1| - 0.12 11.9 0.0 0.22 11.0 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.7 gi|257387782|ref|YP_003177555.1| - 0.15 11.1 0.8 0.25 10.4 0.0 1.7 2 0 0 2 2 2 0 Zeta toxin DUF106 PF01956.11 gi|257387783|ref|YP_003177556.1| - 2.7e-44 150.6 0.4 3.5e-44 150.2 0.2 1.1 1 0 0 1 1 1 1 Integral membrane protein DUF106 60KD_IMP PF02096.15 gi|257387783|ref|YP_003177556.1| - 0.0003 20.5 0.3 0.00048 19.8 0.2 1.3 1 0 0 1 1 1 1 60Kd inner membrane protein DUF2585 PF10755.4 gi|257387783|ref|YP_003177556.1| - 0.029 13.8 1.7 0.043 13.2 0.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2585) DUF4199 PF13858.1 gi|257387783|ref|YP_003177556.1| - 0.66 9.8 2.9 0.99 9.3 0.6 2.2 2 1 1 3 3 3 0 Protein of unknown function (DUF4199) ADK PF00406.17 gi|257387784|ref|YP_003177557.1| - 2.5e-41 141.0 0.0 3.1e-41 140.7 0.0 1.1 1 0 0 1 1 1 1 Adenylate kinase ADK_lid PF05191.9 gi|257387784|ref|YP_003177557.1| - 3.5e-17 61.7 5.6 5.6e-17 61.1 3.8 1.3 1 0 0 1 1 1 1 Adenylate kinase, active site lid AAA_17 PF13207.1 gi|257387784|ref|YP_003177557.1| - 7.2e-10 39.7 0.3 3.1e-09 37.6 0.0 1.8 1 1 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|257387784|ref|YP_003177557.1| - 9.1e-06 25.5 0.0 1.4e-05 25.0 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|257387784|ref|YP_003177557.1| - 0.00072 19.8 0.0 0.0017 18.6 0.0 1.6 1 1 0 1 1 1 1 AAA domain GFA PF04828.9 gi|257387784|ref|YP_003177557.1| - 0.0048 16.8 0.1 0.15 12.0 0.0 2.2 1 1 1 2 2 2 1 Glutathione-dependent formaldehyde-activating enzyme zf-IS66 PF13005.2 gi|257387784|ref|YP_003177557.1| - 0.018 14.9 0.9 0.4 10.6 0.1 2.4 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 RuvB_N PF05496.7 gi|257387784|ref|YP_003177557.1| - 0.019 14.0 0.0 0.031 13.3 0.0 1.3 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB N-terminus DZR PF12773.2 gi|257387784|ref|YP_003177557.1| - 0.022 14.5 0.2 0.04 13.7 0.1 1.4 1 0 0 1 1 1 0 Double zinc ribbon Zeta_toxin PF06414.7 gi|257387784|ref|YP_003177557.1| - 0.066 12.2 0.1 0.23 10.5 0.1 1.8 1 1 0 1 1 1 0 Zeta toxin MMR_HSR1 PF01926.18 gi|257387784|ref|YP_003177557.1| - 0.067 13.1 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 50S ribosome-binding GTPase Prok-RING_1 PF14446.1 gi|257387784|ref|YP_003177557.1| - 0.091 12.5 2.8 0.66 9.7 0.1 2.2 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 TF_Zn_Ribbon PF08271.7 gi|257387784|ref|YP_003177557.1| - 0.17 11.2 2.4 0.4 10.0 1.7 1.7 1 0 0 1 1 1 0 TFIIB zinc-binding A2L_zn_ribbon PF08792.5 gi|257387784|ref|YP_003177557.1| - 0.18 11.3 4.9 1.7 8.1 0.5 2.4 2 0 0 2 2 2 0 A2L zinc ribbon domain Nudix_N_2 PF14803.1 gi|257387784|ref|YP_003177557.1| - 0.66 9.7 3.6 7.2 6.3 0.3 2.5 2 0 0 2 2 2 0 Nudix N-terminal DUF2150 PF09920.4 gi|257387785|ref|YP_003177558.1| - 1.4e-69 233.4 12.6 1.7e-69 233.2 8.8 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2150) Big_1 PF02369.11 gi|257387786|ref|YP_003177559.1| - 5.3e-05 23.0 6.6 5.3e-05 23.0 4.5 6.1 5 3 1 6 6 6 2 Bacterial Ig-like domain (group 1) NAD_binding_8 PF13450.1 gi|257387786|ref|YP_003177559.1| - 0.038 14.0 0.0 0.21 11.6 0.0 2.3 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain HMG_CoA_synt_N PF01154.12 gi|257387787|ref|YP_003177560.1| - 9.4e-28 96.9 0.0 1.4e-27 96.3 0.0 1.3 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal HMG_CoA_synt_C PF08540.5 gi|257387787|ref|YP_003177560.1| - 2.8e-19 69.6 0.0 7.4e-19 68.2 0.0 1.6 2 0 0 2 2 2 1 Hydroxymethylglutaryl-coenzyme A synthase C terminal MAF_flag10 PF01973.13 gi|257387787|ref|YP_003177560.1| - 0.002 17.6 0.0 0.39 10.1 0.0 2.2 1 1 1 2 2 2 2 Protein of unknown function DUF115 PQQ_2 PF13360.1 gi|257387788|ref|YP_003177561.1| - 3e-33 115.2 9.1 4.4e-17 62.3 0.2 3.2 1 1 1 3 3 3 3 PQQ-like domain PQQ_3 PF13570.1 gi|257387788|ref|YP_003177561.1| - 1.4e-23 82.4 28.1 8.4e-07 29.0 0.1 8.2 8 0 0 8 8 8 6 PQQ-like domain PQQ PF01011.16 gi|257387788|ref|YP_003177561.1| - 4.4e-17 60.6 13.7 0.0025 17.2 0.0 8.2 6 1 3 9 9 9 5 PQQ enzyme repeat YesK PF14150.1 gi|257387789|ref|YP_003177562.1| - 0.031 14.3 1.2 0.091 12.8 0.5 2.0 1 1 1 2 2 2 0 YesK-like protein DUF975 PF06161.6 gi|257387789|ref|YP_003177562.1| - 0.062 13.0 0.1 0.13 11.9 0.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF975) DUF998 PF06197.8 gi|257387790|ref|YP_003177563.1| - 0.02 14.1 0.2 0.028 13.7 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF998) PHP PF02811.14 gi|257387791|ref|YP_003177564.1| - 1.7e-07 31.2 0.0 2.6e-07 30.5 0.0 1.3 1 1 0 1 1 1 1 PHP domain PHP_C PF13263.1 gi|257387791|ref|YP_003177564.1| - 0.0061 16.0 0.7 0.024 14.1 0.0 2.3 3 0 0 3 3 3 1 PHP-associated HTH_31 PF13560.1 gi|257387792|ref|YP_003177565.1| - 2.5e-08 34.0 0.0 7.8e-08 32.4 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|257387792|ref|YP_003177565.1| - 7.5e-08 32.1 0.0 1.9e-07 30.8 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix HTH_19 PF12844.2 gi|257387792|ref|YP_003177565.1| - 2.6e-06 27.3 0.0 7.1e-06 25.9 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain RseC_MucC PF04246.7 gi|257387793|ref|YP_003177566.1| - 0.57 9.7 2.9 1.2 8.7 0.6 2.3 2 1 0 2 2 2 0 Positive regulator of sigma(E), RseC/MucC BRK PF07533.11 gi|257387794|ref|YP_003177567.1| - 0.013 14.9 0.0 0.042 13.3 0.0 1.8 1 0 0 1 1 1 0 BRK domain VCBS PF13517.1 gi|257387795|ref|YP_003177568.1| - 1.7e-41 140.3 71.6 1e-09 38.5 0.8 7.2 4 3 4 8 8 8 8 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella FG-GAP PF01839.18 gi|257387795|ref|YP_003177568.1| - 9e-18 63.4 43.8 0.0021 17.7 0.1 7.9 7 1 1 8 8 8 7 FG-GAP repeat UnbV_ASPIC PF07593.7 gi|257387795|ref|YP_003177568.1| - 4.7e-13 48.6 1.0 1.1e-12 47.4 0.7 1.7 1 0 0 1 1 1 1 ASPIC and UnbV Cadherin-like PF12733.2 gi|257387795|ref|YP_003177568.1| - 0.00041 20.5 0.8 0.0015 18.7 0.5 1.9 1 0 0 1 1 1 1 Cadherin-like beta sandwich domain Peripla_BP_6 PF13458.1 gi|257387797|ref|YP_003177570.1| - 3.1e-56 191.2 1.6 4.1e-56 190.8 1.1 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.1 gi|257387797|ref|YP_003177570.1| - 1.5e-24 86.4 0.0 2.2e-24 85.8 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein domain ANF_receptor PF01094.23 gi|257387797|ref|YP_003177570.1| - 0.015 14.0 0.0 0.069 11.9 0.0 1.9 1 1 0 1 1 1 0 Receptor family ligand binding region HalX PF08663.5 gi|257387798|ref|YP_003177571.1| - 1.6e-16 60.0 4.7 3.6e-16 58.9 3.3 1.6 1 0 0 1 1 1 1 HalX domain Response_reg PF00072.19 gi|257387798|ref|YP_003177571.1| - 1.7e-16 60.1 0.3 2.6e-16 59.6 0.2 1.3 1 0 0 1 1 1 1 Response regulator receiver domain DUF677 PF05055.7 gi|257387798|ref|YP_003177571.1| - 0.021 13.4 0.0 0.029 13.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF677) Put_Phosphatase PF06888.7 gi|257387798|ref|YP_003177571.1| - 0.052 12.7 0.1 0.074 12.2 0.1 1.2 1 0 0 1 1 1 0 Putative Phosphatase MbeD_MobD PF04899.7 gi|257387798|ref|YP_003177571.1| - 0.11 12.4 0.2 0.42 10.5 0.1 2.0 1 1 0 1 1 1 0 MbeD/MobD like RNase_H PF00075.19 gi|257387801|ref|YP_003177574.1| - 0.0028 17.9 0.0 0.0039 17.5 0.0 1.2 1 0 0 1 1 1 1 RNase H PTA_PTB PF01515.14 gi|257387802|ref|YP_003177575.1| - 2.8e-94 315.7 0.0 3.7e-94 315.3 0.0 1.2 1 0 0 1 1 1 1 Phosphate acetyl/butaryl transferase Malic_M PF03949.10 gi|257387802|ref|YP_003177575.1| - 2.7e-68 230.3 0.5 2.7e-68 230.3 0.3 1.6 2 0 0 2 2 2 1 Malic enzyme, NAD binding domain malic PF00390.14 gi|257387802|ref|YP_003177575.1| - 1e-29 103.3 0.0 1.6e-27 96.2 0.0 2.4 1 1 0 1 1 1 1 Malic enzyme, N-terminal domain MCPsignal PF00015.16 gi|257387803|ref|YP_003177576.1| - 6.1e-44 150.1 60.9 5.3e-41 140.5 22.5 3.2 1 1 1 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain PAS_9 PF13426.1 gi|257387803|ref|YP_003177576.1| - 5.7e-10 39.5 0.0 2.9e-09 37.2 0.0 2.3 1 0 0 1 1 1 1 PAS domain PAS PF00989.19 gi|257387803|ref|YP_003177576.1| - 2.3e-09 37.0 0.2 3.4e-08 33.2 0.0 3.0 3 1 0 3 3 2 1 PAS fold PAS_4 PF08448.5 gi|257387803|ref|YP_003177576.1| - 7.1e-08 32.4 0.2 7.1e-08 32.4 0.1 4.0 4 2 1 5 5 4 1 PAS fold Laminin_II PF06009.7 gi|257387803|ref|YP_003177576.1| - 0.00023 20.9 35.7 0.0035 17.0 7.4 3.9 2 1 1 3 3 3 2 Laminin Domain II PAS_8 PF13188.1 gi|257387803|ref|YP_003177576.1| - 0.00039 20.1 0.0 0.0012 18.5 0.0 1.9 1 0 0 1 1 1 1 PAS domain DUF745 PF05335.8 gi|257387803|ref|YP_003177576.1| - 0.0028 17.1 11.1 0.0028 17.1 7.7 4.0 1 1 1 3 3 3 2 Protein of unknown function (DUF745) Use1 PF09753.4 gi|257387803|ref|YP_003177576.1| - 0.0068 15.8 2.4 0.0068 15.8 1.7 3.0 3 1 0 3 3 3 1 Membrane fusion protein Use1 PhageMin_Tail PF10145.4 gi|257387803|ref|YP_003177576.1| - 0.0087 15.7 15.5 0.0087 15.7 10.7 3.7 1 1 0 2 2 2 1 Phage-related minor tail protein DUF948 PF06103.6 gi|257387803|ref|YP_003177576.1| - 0.013 15.3 35.0 0.044 13.6 2.8 4.7 3 2 2 5 5 4 0 Bacterial protein of unknown function (DUF948) Baculo_PEP_C PF04513.7 gi|257387803|ref|YP_003177576.1| - 0.016 15.0 30.2 0.02 14.7 2.6 4.4 2 2 1 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus AAA_13 PF13166.1 gi|257387803|ref|YP_003177576.1| - 0.055 11.9 30.5 0.21 10.0 5.6 2.2 1 1 1 2 2 2 0 AAA domain TPR_MLP1_2 PF07926.7 gi|257387803|ref|YP_003177576.1| - 0.069 12.8 33.4 0.28 10.9 7.8 3.5 2 2 0 2 2 2 0 TPR/MLP1/MLP2-like protein PAS_7 PF12860.2 gi|257387803|ref|YP_003177576.1| - 0.15 12.0 8.5 1 9.3 0.0 4.5 2 2 1 4 4 4 0 PAS fold Spc7 PF08317.6 gi|257387803|ref|YP_003177576.1| - 0.25 9.9 32.4 0.58 8.7 6.0 3.2 1 1 2 3 3 3 0 Spc7 kinetochore protein DUF1664 PF07889.7 gi|257387803|ref|YP_003177576.1| - 0.55 10.0 35.0 0.62 9.8 1.0 5.4 3 1 2 6 6 5 0 Protein of unknown function (DUF1664) DUF1759 PF03564.10 gi|257387803|ref|YP_003177576.1| - 0.82 9.4 12.4 12 5.7 0.4 4.1 3 1 1 4 4 4 0 Protein of unknown function (DUF1759) DUF4279 PF14106.1 gi|257387803|ref|YP_003177576.1| - 1.1 9.1 7.9 6 6.7 0.2 4.5 4 1 1 5 5 5 0 Domain of unknown function (DUF4279) WXG100 PF06013.7 gi|257387803|ref|YP_003177576.1| - 1.3 9.1 38.9 0.58 10.2 0.3 7.4 2 1 4 7 7 7 0 Proteins of 100 residues with WXG APG17 PF04108.7 gi|257387803|ref|YP_003177576.1| - 1.4 7.6 31.0 0.39 9.4 16.4 3.1 2 1 0 3 3 3 0 Autophagy protein Apg17 EzrA PF06160.7 gi|257387803|ref|YP_003177576.1| - 1.5 6.9 30.4 0.19 9.8 5.5 2.8 2 1 0 2 2 2 0 Septation ring formation regulator, EzrA FH2 PF02181.18 gi|257387803|ref|YP_003177576.1| - 3.4 6.4 17.8 1.3 7.8 1.7 3.8 2 2 1 3 3 3 0 Formin Homology 2 Domain BLOC1_2 PF10046.4 gi|257387803|ref|YP_003177576.1| - 4.1 7.5 28.0 3.5 7.8 0.8 5.0 4 1 1 5 5 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 ADIP PF11559.3 gi|257387803|ref|YP_003177576.1| - 4.5 7.1 27.3 0.6 10.0 4.0 4.8 2 2 3 5 5 5 0 Afadin- and alpha -actinin-Binding DASH_Dam1 PF08653.5 gi|257387803|ref|YP_003177576.1| - 4.7 7.0 8.7 0.49 10.1 0.7 3.3 4 0 0 4 4 2 0 DASH complex subunit Dam1 STAT_alpha PF01017.15 gi|257387803|ref|YP_003177576.1| - 5.5 6.6 15.9 8.5 6.0 1.0 3.5 2 2 0 2 2 2 0 STAT protein, all-alpha domain Lectin_N PF03954.9 gi|257387803|ref|YP_003177576.1| - 5.6 6.3 14.2 1.3 8.4 1.3 3.4 2 2 1 3 3 3 0 Hepatic lectin, N-terminal domain PilJ PF13675.1 gi|257387803|ref|YP_003177576.1| - 5.6 7.3 29.1 0.07 13.4 2.4 5.0 3 2 2 5 5 5 0 Type IV pili methyl-accepting chemotaxis transducer N-term MtrB PF05440.7 gi|257387803|ref|YP_003177576.1| - 5.9 7.0 13.0 8.2 6.5 0.1 4.6 3 1 0 4 4 4 0 Tetrahydromethanopterin S-methyltransferase subunit B ApoO PF09769.4 gi|257387803|ref|YP_003177576.1| - 6.4 6.4 14.2 0.44 10.2 1.0 4.3 3 2 1 4 4 4 0 Apolipoprotein O ParB PF08775.5 gi|257387803|ref|YP_003177576.1| - 7.3 6.9 18.3 1.3 9.3 1.2 4.1 4 1 0 4 4 4 0 ParB family COX15-CtaA PF02628.10 gi|257387804|ref|YP_003177577.1| - 2.7e-26 92.1 30.7 7.9e-26 90.6 21.3 1.7 1 1 0 1 1 1 1 Cytochrome oxidase assembly protein DUF420 PF04238.7 gi|257387804|ref|YP_003177577.1| - 0.046 13.6 0.6 0.046 13.6 0.4 2.6 1 1 1 3 3 3 0 Protein of unknown function (DUF420) AAA PF00004.24 gi|257387805|ref|YP_003177578.1| - 3.8e-11 43.3 0.1 1.4e-10 41.5 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|257387805|ref|YP_003177578.1| - 1.7e-06 28.1 0.0 3.7e-05 23.8 0.0 2.6 2 1 0 2 2 2 1 AAA domain RuvB_N PF05496.7 gi|257387805|ref|YP_003177578.1| - 5.3e-06 25.6 0.0 1e-05 24.7 0.0 1.4 1 0 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|257387805|ref|YP_003177578.1| - 1.4e-05 25.1 0.1 0.0096 15.9 0.0 3.7 3 1 1 4 4 4 1 AAA ATPase domain AAA_17 PF13207.1 gi|257387805|ref|YP_003177578.1| - 0.00019 22.2 0.6 0.0011 19.7 0.4 2.5 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.7 gi|257387805|ref|YP_003177578.1| - 0.0007 18.7 0.0 0.0014 17.7 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin Bac_DnaA PF00308.13 gi|257387805|ref|YP_003177578.1| - 0.00085 19.0 0.0 0.023 14.3 0.0 2.4 2 0 0 2 2 2 1 Bacterial dnaA protein AAA_5 PF07728.9 gi|257387805|ref|YP_003177578.1| - 0.0024 17.6 0.0 0.0076 15.9 0.0 1.9 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_33 PF13671.1 gi|257387805|ref|YP_003177578.1| - 0.0041 16.9 0.0 0.024 14.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_14 PF13173.1 gi|257387805|ref|YP_003177578.1| - 0.0046 16.8 0.0 0.014 15.2 0.0 1.7 1 1 0 2 2 2 1 AAA domain IstB_IS21 PF01695.12 gi|257387805|ref|YP_003177578.1| - 0.0049 16.3 0.0 0.0085 15.5 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_2 PF07724.9 gi|257387805|ref|YP_003177578.1| - 0.007 16.3 0.3 0.046 13.6 0.0 2.1 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) Rad17 PF03215.10 gi|257387805|ref|YP_003177578.1| - 0.0091 14.7 0.0 0.77 8.3 0.0 2.2 2 0 0 2 2 2 1 Rad17 cell cycle checkpoint protein DUF815 PF05673.8 gi|257387805|ref|YP_003177578.1| - 0.011 14.6 0.0 0.022 13.6 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_28 PF13521.1 gi|257387805|ref|YP_003177578.1| - 0.012 15.5 0.1 0.037 14.0 0.0 1.8 2 0 0 2 2 1 0 AAA domain RNA_helicase PF00910.17 gi|257387805|ref|YP_003177578.1| - 0.025 14.7 0.0 0.081 13.1 0.0 1.8 1 1 0 1 1 1 0 RNA helicase AAA_18 PF13238.1 gi|257387805|ref|YP_003177578.1| - 0.032 14.5 0.1 0.13 12.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|257387805|ref|YP_003177578.1| - 0.04 13.5 0.0 0.13 11.9 0.0 1.9 2 0 0 2 2 1 0 NACHT domain DUF258 PF03193.11 gi|257387805|ref|YP_003177578.1| - 0.1 11.8 0.0 0.26 10.4 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function, DUF258 Mg_chelatase PF01078.16 gi|257387805|ref|YP_003177578.1| - 0.11 11.6 0.0 0.2 10.8 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_3 PF07726.6 gi|257387805|ref|YP_003177578.1| - 0.12 11.9 0.0 0.21 11.1 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) ResIII PF04851.10 gi|257387805|ref|YP_003177578.1| - 0.13 12.1 0.0 0.43 10.3 0.0 1.9 1 1 1 2 2 2 0 Type III restriction enzyme, res subunit Peripla_BP_6 PF13458.1 gi|257387806|ref|YP_003177579.1| - 1.9e-47 162.2 3.8 2.4e-47 161.9 2.6 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.1 gi|257387806|ref|YP_003177579.1| - 2.4e-15 56.1 0.0 3.4e-09 35.9 0.0 2.1 2 0 0 2 2 2 2 Periplasmic binding protein domain ANF_receptor PF01094.23 gi|257387806|ref|YP_003177579.1| - 0.00017 20.5 0.1 0.011 14.5 0.0 2.1 2 0 0 2 2 2 2 Receptor family ligand binding region SlyX PF04102.7 gi|257387807|ref|YP_003177580.1| - 0.013 15.8 6.6 0.031 14.6 4.6 1.6 1 0 0 1 1 1 0 SlyX HAUS-augmin3 PF14932.1 gi|257387807|ref|YP_003177580.1| - 0.016 14.4 2.7 0.024 13.8 1.9 1.2 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 3 COG2 PF06148.6 gi|257387807|ref|YP_003177580.1| - 0.038 13.8 0.7 0.061 13.1 0.5 1.3 1 0 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 Wbp11 PF09429.5 gi|257387807|ref|YP_003177580.1| - 0.092 12.7 1.0 0.17 11.8 0.7 1.3 1 0 0 1 1 1 0 WW domain binding protein 11 TusA PF01206.12 gi|257387808|ref|YP_003177581.1| - 0.027 14.0 0.1 0.042 13.4 0.0 1.3 1 0 0 1 1 1 0 Sulfurtransferase TusA DUF493 PF04359.9 gi|257387808|ref|YP_003177581.1| - 0.12 12.7 0.1 0.19 12.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF493) SNARE_assoc PF09335.6 gi|257387809|ref|YP_003177582.1| - 3e-17 62.9 7.5 3e-17 62.9 5.2 1.8 2 0 0 2 2 2 1 SNARE associated Golgi protein PAS_9 PF13426.1 gi|257387810|ref|YP_003177583.1| - 2.2e-60 201.4 2.4 4.3e-17 62.3 0.2 4.4 4 0 0 4 4 4 4 PAS domain PAS_4 PF08448.5 gi|257387810|ref|YP_003177583.1| - 1.7e-49 166.4 15.6 3.1e-14 52.9 0.0 4.8 5 0 0 5 5 5 4 PAS fold PAS_3 PF08447.6 gi|257387810|ref|YP_003177583.1| - 3.9e-42 142.2 3.4 2.2e-16 59.7 0.2 4.6 5 0 0 5 5 5 4 PAS fold PAS PF00989.19 gi|257387810|ref|YP_003177583.1| - 1.8e-39 134.0 1.1 2.6e-15 56.2 0.0 4.4 4 0 0 4 4 4 4 PAS fold HATPase_c PF02518.21 gi|257387810|ref|YP_003177583.1| - 1e-16 60.5 0.1 3.7e-16 58.8 0.1 1.9 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|257387810|ref|YP_003177583.1| - 1.1e-16 59.9 0.2 5.2e-06 26.1 0.0 4.9 4 0 0 4 4 4 3 PAS domain Response_reg PF00072.19 gi|257387810|ref|YP_003177583.1| - 1.6e-12 47.4 0.2 1.2e-11 44.5 0.0 2.6 3 0 0 3 3 3 1 Response regulator receiver domain HisKA PF00512.20 gi|257387810|ref|YP_003177583.1| - 2e-09 37.2 0.9 2e-09 37.2 0.6 4.0 5 0 0 5 5 5 1 His Kinase A (phospho-acceptor) domain PAS_11 PF14598.1 gi|257387810|ref|YP_003177583.1| - 1.5e-06 28.1 0.0 0.8 9.6 0.0 4.1 4 0 0 4 4 4 2 PAS domain PAS_10 PF13596.1 gi|257387810|ref|YP_003177583.1| - 1.4e-05 25.2 0.0 0.099 12.9 0.0 4.2 4 0 0 4 4 4 1 PAS domain Rieske PF00355.21 gi|257387811|ref|YP_003177584.1| - 0.015 14.8 3.0 0.017 14.6 2.1 1.0 1 0 0 1 1 1 0 Rieske [2Fe-2S] domain Auto_anti-p27 PF06677.7 gi|257387811|ref|YP_003177584.1| - 0.029 14.1 3.3 0.034 13.9 2.3 1.2 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Prok-RING_1 PF14446.1 gi|257387811|ref|YP_003177584.1| - 1.6 8.5 9.2 2.2 8.0 6.4 1.5 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 zf-Mss51 PF13824.1 gi|257387811|ref|YP_003177584.1| - 3.8 7.4 7.8 8.3 6.3 5.4 1.6 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Fer4_3 PF12798.2 gi|257387811|ref|YP_003177584.1| - 7.1 7.4 7.3 2.6 8.7 2.7 2.1 2 1 0 2 2 2 0 4Fe-4S binding domain Oxidored_molyb PF00174.14 gi|257387812|ref|YP_003177585.1| - 8.9e-43 145.6 0.0 1.4e-42 144.9 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain Mo-co_dimer PF03404.11 gi|257387812|ref|YP_003177585.1| - 2.1e-13 50.0 0.1 4.8e-13 48.8 0.0 1.6 1 0 0 1 1 1 1 Mo-co oxidoreductase dimerisation domain PspA_IM30 PF04012.7 gi|257387813|ref|YP_003177586.1| - 1.2e-29 103.2 24.6 1.5e-29 102.9 17.1 1.1 1 0 0 1 1 1 1 PspA/IM30 family COG2 PF06148.6 gi|257387813|ref|YP_003177586.1| - 0.00026 20.8 6.7 0.024 14.5 0.4 3.2 1 1 0 2 2 2 2 COG (conserved oligomeric Golgi) complex component, COG2 Snf7 PF03357.16 gi|257387813|ref|YP_003177586.1| - 0.0015 17.9 23.2 0.26 10.6 16.1 3.1 1 1 0 1 1 1 1 Snf7 Spc7 PF08317.6 gi|257387813|ref|YP_003177586.1| - 0.0023 16.6 11.3 0.0023 16.6 7.8 2.1 1 1 1 2 2 2 1 Spc7 kinetochore protein Baculo_PEP_C PF04513.7 gi|257387813|ref|YP_003177586.1| - 0.0071 16.1 4.7 0.32 10.8 0.0 3.5 1 1 2 3 3 3 1 Baculovirus polyhedron envelope protein, PEP, C terminus AAA_13 PF13166.1 gi|257387813|ref|YP_003177586.1| - 0.011 14.2 9.5 0.017 13.6 6.6 1.4 1 1 0 1 1 1 0 AAA domain COG5 PF10392.4 gi|257387813|ref|YP_003177586.1| - 0.011 15.6 14.4 0.075 12.9 5.1 3.4 1 1 2 3 3 3 0 Golgi transport complex subunit 5 DUF972 PF06156.8 gi|257387813|ref|YP_003177586.1| - 0.012 15.9 16.2 0.024 14.9 2.5 3.3 1 1 2 3 3 3 0 Protein of unknown function (DUF972) RRF PF01765.14 gi|257387813|ref|YP_003177586.1| - 0.016 14.7 2.3 0.039 13.4 1.6 1.6 1 0 0 1 1 1 0 Ribosome recycling factor Laminin_II PF06009.7 gi|257387813|ref|YP_003177586.1| - 0.017 14.8 10.1 1.2 8.9 0.2 3.7 1 1 2 3 3 3 0 Laminin Domain II DUF1014 PF06244.7 gi|257387813|ref|YP_003177586.1| - 0.033 14.4 2.4 0.033 14.4 1.7 2.6 1 1 0 2 2 2 0 Protein of unknown function (DUF1014) MamL-1 PF09596.5 gi|257387813|ref|YP_003177586.1| - 0.061 13.1 0.3 0.061 13.1 0.2 2.9 3 0 0 3 3 2 0 MamL-1 domain DivIC PF04977.10 gi|257387813|ref|YP_003177586.1| - 0.11 11.9 22.7 0.17 11.4 0.6 4.6 3 1 2 5 5 5 0 Septum formation initiator DASH_Dam1 PF08653.5 gi|257387813|ref|YP_003177586.1| - 0.16 11.7 1.3 7.2 6.4 0.0 3.1 3 1 0 3 3 2 0 DASH complex subunit Dam1 DUF3818 PF12825.2 gi|257387813|ref|YP_003177586.1| - 0.21 10.1 2.3 0.22 10.1 0.8 1.5 1 1 0 1 1 1 0 Domain of unknown function in PX-proteins (DUF3818) ApoLp-III PF07464.6 gi|257387813|ref|YP_003177586.1| - 0.36 10.8 14.1 1.9 8.4 5.6 2.5 1 1 1 2 2 2 0 Apolipophorin-III precursor (apoLp-III) DUF948 PF06103.6 gi|257387813|ref|YP_003177586.1| - 0.37 10.6 5.0 9.6 6.1 0.0 3.6 2 1 1 4 4 3 0 Bacterial protein of unknown function (DUF948) DUF1664 PF07889.7 gi|257387813|ref|YP_003177586.1| - 0.57 9.9 9.3 9.2 6.0 0.8 3.7 1 1 3 4 4 4 0 Protein of unknown function (DUF1664) TBPIP PF07106.8 gi|257387813|ref|YP_003177586.1| - 0.61 9.6 14.8 0.035 13.6 3.4 2.9 2 2 1 3 3 3 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF342 PF03961.8 gi|257387813|ref|YP_003177586.1| - 0.62 8.4 14.9 0.22 9.8 5.9 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF342) IncA PF04156.9 gi|257387813|ref|YP_003177586.1| - 0.69 9.4 28.7 0.2 11.2 5.2 2.7 1 1 1 2 2 2 0 IncA protein DUF2089 PF09862.4 gi|257387813|ref|YP_003177586.1| - 0.76 9.5 5.1 1.1 9.0 0.4 3.1 3 1 0 3 3 3 0 Protein of unknown function (DUF2089) MerR-DNA-bind PF09278.6 gi|257387813|ref|YP_003177586.1| - 0.77 10.2 27.8 2.9 8.3 6.6 4.7 3 1 1 4 4 4 0 MerR, DNA binding DUF2229 PF09989.4 gi|257387813|ref|YP_003177586.1| - 0.8 9.1 7.5 4.1 6.8 0.4 2.2 1 1 1 2 2 2 0 CoA enzyme activase uncharacterised domain (DUF2229) DUF3584 PF12128.3 gi|257387813|ref|YP_003177586.1| - 1.2 6.4 27.8 2 5.6 19.2 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3584) WXG100 PF06013.7 gi|257387813|ref|YP_003177586.1| - 1.2 9.2 13.0 1.2 9.1 0.4 4.1 1 1 3 4 4 4 0 Proteins of 100 residues with WXG CsgE PF10627.4 gi|257387813|ref|YP_003177586.1| - 1.2 8.9 4.1 0.55 10.0 0.6 2.1 2 1 1 3 3 1 0 Curli assembly protein CsgE DUF724 PF05266.9 gi|257387813|ref|YP_003177586.1| - 1.4 8.5 15.7 0.3 10.6 1.4 2.8 1 1 2 3 3 3 0 Protein of unknown function (DUF724) Cortex-I_coil PF09304.5 gi|257387813|ref|YP_003177586.1| - 1.9 8.5 25.9 0.037 14.0 3.2 3.3 1 1 2 3 3 3 0 Cortexillin I, coiled coil TMF_DNA_bd PF12329.3 gi|257387813|ref|YP_003177586.1| - 2.1 8.2 22.6 1.6 8.5 0.8 3.6 3 1 1 4 4 4 0 TATA element modulatory factor 1 DNA binding Flu_NS2 PF00601.14 gi|257387813|ref|YP_003177586.1| - 2.2 8.5 5.4 3.9 7.7 1.4 2.8 1 1 2 3 3 3 0 Influenza non-structural protein (NS2) Phage_GP20 PF06810.6 gi|257387813|ref|YP_003177586.1| - 2.4 7.5 17.7 1.9 7.9 0.3 3.7 1 1 2 4 4 4 0 Phage minor structural protein GP20 V_ATPase_I PF01496.14 gi|257387813|ref|YP_003177586.1| - 2.5 5.8 12.5 0.21 9.4 1.9 2.3 1 1 2 3 3 3 0 V-type ATPase 116kDa subunit family LUC7 PF03194.10 gi|257387813|ref|YP_003177586.1| - 2.9 7.3 21.7 0.07 12.6 2.6 2.7 1 1 1 2 2 2 0 LUC7 N_terminus Syntaxin-6_N PF09177.6 gi|257387813|ref|YP_003177586.1| - 3.2 8.2 11.2 10 6.5 0.2 3.5 1 1 3 4 4 4 0 Syntaxin 6, N-terminal RTBV_P46 PF06216.6 gi|257387813|ref|YP_003177586.1| - 4.3 6.0 5.1 2.4 6.9 0.2 2.0 1 1 1 2 2 2 0 Rice tungro bacilliform virus P46 protein ADIP PF11559.3 gi|257387813|ref|YP_003177586.1| - 4.5 7.1 26.3 4.1 7.2 3.5 3.4 1 1 2 3 3 3 0 Afadin- and alpha -actinin-Binding EMP24_GP25L PF01105.19 gi|257387813|ref|YP_003177586.1| - 5 6.8 13.2 0.54 9.9 0.6 2.7 2 2 1 3 3 3 0 emp24/gp25L/p24 family/GOLD APG6 PF04111.7 gi|257387813|ref|YP_003177586.1| - 5.7 5.8 26.6 0.48 9.4 9.4 2.2 1 1 1 2 2 2 0 Autophagy protein Apg6 Allexi_40kDa PF05549.6 gi|257387813|ref|YP_003177586.1| - 5.9 6.1 7.2 4.9 6.3 2.4 2.4 1 1 1 2 2 2 0 Allexivirus 40kDa protein DASH_Dad3 PF08656.5 gi|257387813|ref|YP_003177586.1| - 6.5 6.5 7.3 5.9 6.6 0.9 2.9 2 1 1 3 3 2 0 DASH complex subunit Dad3 Ribonuc_red_lgC PF02867.10 gi|257387814|ref|YP_003177587.1| - 4.7e-153 510.6 0.0 5.8e-153 510.3 0.0 1.1 1 0 0 1 1 1 1 Ribonucleotide reductase, barrel domain TSCPD PF12637.2 gi|257387814|ref|YP_003177587.1| - 6.8e-28 96.4 0.0 2.9e-27 94.4 0.0 2.2 1 0 0 1 1 1 1 TSCPD domain Ribonuc_red_lgN PF00317.16 gi|257387814|ref|YP_003177587.1| - 2.2e-23 81.8 0.0 9.1e-23 79.8 0.0 2.1 2 0 0 2 2 2 1 Ribonucleotide reductase, all-alpha domain Fzo_mitofusin PF04799.8 gi|257387815|ref|YP_003177588.1| - 0.0065 15.8 3.6 0.0072 15.7 2.5 1.0 1 0 0 1 1 1 1 fzo-like conserved region PAP2 PF01569.16 gi|257387815|ref|YP_003177588.1| - 0.62 9.7 7.3 0.7 9.5 5.1 1.1 1 0 0 1 1 1 0 PAP2 superfamily GATase PF00117.23 gi|257387816|ref|YP_003177589.1| - 4.2e-46 156.8 0.0 4.8e-46 156.6 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|257387816|ref|YP_003177589.1| - 5.1e-08 32.6 0.0 1.6e-07 31.0 0.0 1.7 1 1 0 1 1 1 1 Peptidase C26 Chorismate_bind PF00425.13 gi|257387817|ref|YP_003177590.1| - 4.1e-89 298.2 0.0 6.5e-89 297.6 0.0 1.3 1 0 0 1 1 1 1 chorismate binding enzyme Anth_synt_I_N PF04715.8 gi|257387817|ref|YP_003177590.1| - 2.6e-20 72.8 1.3 8e-19 68.0 0.1 3.1 2 1 0 2 2 2 1 Anthranilate synthase component I, N terminal region PRAI PF00697.17 gi|257387818|ref|YP_003177591.1| - 1.4e-38 132.4 1.6 1.6e-38 132.2 1.1 1.0 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase NMO PF03060.10 gi|257387818|ref|YP_003177591.1| - 0.00041 19.5 3.1 0.00041 19.5 2.1 1.9 1 1 1 2 2 2 1 Nitronate monooxygenase Glyco_trans_4_4 PF13579.1 gi|257387818|ref|YP_003177591.1| - 0.0015 18.6 3.5 0.0015 18.6 2.4 1.7 1 1 1 2 2 2 1 Glycosyl transferase 4-like domain G3P_antiterm PF04309.7 gi|257387818|ref|YP_003177591.1| - 0.0039 16.2 0.5 0.085 11.8 0.0 2.5 1 1 1 2 2 2 1 Glycerol-3-phosphate responsive antiterminator TMP-TENI PF02581.12 gi|257387818|ref|YP_003177591.1| - 0.012 14.6 1.8 0.028 13.5 0.0 2.3 2 1 0 2 2 2 0 Thiamine monophosphate synthase/TENI His_biosynth PF00977.16 gi|257387818|ref|YP_003177591.1| - 0.37 10.0 4.2 0.7 9.1 0.2 2.7 2 1 1 3 3 3 0 Histidine biosynthesis protein PcrB PF01884.12 gi|257387818|ref|YP_003177591.1| - 0.44 9.7 2.5 10 5.2 0.4 2.2 2 0 0 2 2 2 0 PcrB family Glycos_transf_3 PF00591.16 gi|257387819|ref|YP_003177592.1| - 5.6e-99 330.6 2.5 8e-99 330.1 1.7 1.2 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.12 gi|257387819|ref|YP_003177592.1| - 7.3e-19 67.1 3.3 7.3e-19 67.1 2.3 1.9 2 0 0 2 2 2 1 Glycosyl transferase family, helical bundle domain DUF2717 PF10911.3 gi|257387819|ref|YP_003177592.1| - 0.011 15.2 0.0 0.03 13.8 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2717) HTH_10 PF04967.7 gi|257387821|ref|YP_003177594.1| - 5.2e-14 51.5 0.1 7.6e-14 51.0 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain MarR_2 PF12802.2 gi|257387821|ref|YP_003177594.1| - 0.00036 20.1 0.1 0.00078 19.0 0.1 1.6 1 0 0 1 1 1 1 MarR family Sigma70_r4 PF04545.11 gi|257387821|ref|YP_003177594.1| - 0.0025 17.1 0.2 0.0049 16.1 0.1 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_24 PF13412.1 gi|257387821|ref|YP_003177594.1| - 0.0039 16.5 0.0 0.0075 15.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|257387821|ref|YP_003177594.1| - 0.01 15.6 0.0 0.021 14.6 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|257387821|ref|YP_003177594.1| - 0.012 15.1 0.2 0.027 14.0 0.1 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Sigma70_r4_2 PF08281.7 gi|257387821|ref|YP_003177594.1| - 0.013 14.9 0.0 0.023 14.1 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_30 PF13556.1 gi|257387821|ref|YP_003177594.1| - 0.015 14.8 0.0 0.043 13.3 0.0 1.7 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain HTH_38 PF13936.1 gi|257387821|ref|YP_003177594.1| - 0.026 14.0 0.0 0.083 12.4 0.0 1.9 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_IclR PF09339.5 gi|257387821|ref|YP_003177594.1| - 0.027 14.0 0.0 0.059 12.9 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain TrmB PF01978.14 gi|257387821|ref|YP_003177594.1| - 0.077 12.7 0.0 0.15 11.8 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB W2 PF02020.13 gi|257387822|ref|YP_003177595.1| - 0.0055 16.6 0.1 0.0078 16.1 0.0 1.3 1 0 0 1 1 1 1 eIF4-gamma/eIF5/eIF2-epsilon CBS PF00571.23 gi|257387824|ref|YP_003177597.1| - 1.6e-39 133.4 13.5 4.9e-14 51.8 1.4 4.5 4 0 0 4 4 4 4 CBS domain Ribosomal_L9_C PF03948.9 gi|257387824|ref|YP_003177597.1| - 0.0057 16.7 0.5 6.9 6.8 0.0 3.7 4 0 0 4 4 4 2 Ribosomal protein L9, C-terminal domain Ribosomal_S30AE PF02482.14 gi|257387824|ref|YP_003177597.1| - 0.023 15.1 0.1 0.065 13.6 0.1 1.8 1 0 0 1 1 1 0 Sigma 54 modulation protein / S30EA ribosomal protein DUF3010 PF11215.3 gi|257387824|ref|YP_003177597.1| - 0.029 14.3 0.1 0.14 12.0 0.1 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF3010) DUF987 PF06174.6 gi|257387825|ref|YP_003177598.1| - 0.045 13.2 0.0 0.074 12.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF987) Trp_oprn_chp PF09534.5 gi|257387825|ref|YP_003177598.1| - 2.6 7.6 5.4 4.8 6.7 2.4 2.1 1 1 1 2 2 2 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) PIN PF01850.16 gi|257387826|ref|YP_003177599.1| - 1.3e-06 28.7 0.0 1.7e-06 28.3 0.0 1.1 1 0 0 1 1 1 1 PIN domain XPG_I_2 PF12813.2 gi|257387826|ref|YP_003177599.1| - 0.094 12.1 0.0 0.14 11.6 0.0 1.2 1 0 0 1 1 1 0 XPG domain containing DUF217 PF02697.9 gi|257387827|ref|YP_003177600.1| - 5.6e-05 23.3 0.5 6.6e-05 23.0 0.4 1.1 1 0 0 1 1 1 1 Uncharacterized ACR, COG1753 AAA PF00004.24 gi|257387828|ref|YP_003177601.1| - 1.8e-100 332.3 0.0 1.1e-49 168.0 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|257387828|ref|YP_003177601.1| - 9.4e-30 102.4 0.0 8e-29 99.4 0.0 2.5 3 0 0 3 3 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.7 gi|257387828|ref|YP_003177601.1| - 4.1e-15 55.4 0.0 7.3e-07 28.4 0.0 2.9 3 0 0 3 3 3 2 Holliday junction DNA helicase ruvB N-terminus CDC48_2 PF02933.12 gi|257387828|ref|YP_003177601.1| - 7.8e-15 54.2 0.0 3.7e-14 52.0 0.0 2.2 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), domain 2 AAA_16 PF13191.1 gi|257387828|ref|YP_003177601.1| - 1.2e-14 54.7 0.2 6.9e-07 29.4 0.0 3.4 3 1 0 3 3 2 2 AAA ATPase domain AAA_22 PF13401.1 gi|257387828|ref|YP_003177601.1| - 2e-13 50.5 0.2 0.00041 20.4 0.1 4.4 2 2 0 2 2 2 2 AAA domain AAA_2 PF07724.9 gi|257387828|ref|YP_003177601.1| - 4.6e-13 49.4 0.0 1.1e-05 25.4 0.0 2.6 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_5 PF07728.9 gi|257387828|ref|YP_003177601.1| - 2.1e-12 46.9 2.2 0.00018 21.2 0.0 4.3 3 2 0 3 3 2 2 AAA domain (dynein-related subfamily) AAA_17 PF13207.1 gi|257387828|ref|YP_003177601.1| - 7.3e-12 46.1 0.0 0.00016 22.5 0.0 3.2 3 0 0 3 3 2 2 AAA domain AAA_33 PF13671.1 gi|257387828|ref|YP_003177601.1| - 2.8e-11 43.4 0.0 3.1e-05 23.8 0.0 2.6 2 0 0 2 2 2 2 AAA domain TIP49 PF06068.8 gi|257387828|ref|YP_003177601.1| - 1.1e-10 40.8 0.0 0.0003 19.6 0.0 3.1 3 0 0 3 3 3 2 TIP49 C-terminus AAA_19 PF13245.1 gi|257387828|ref|YP_003177601.1| - 2.2e-09 36.9 1.2 0.0012 18.5 0.1 2.9 2 0 0 2 2 2 2 Part of AAA domain AAA_14 PF13173.1 gi|257387828|ref|YP_003177601.1| - 1.7e-08 34.4 0.0 0.0024 17.7 0.0 2.4 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.12 gi|257387828|ref|YP_003177601.1| - 3e-08 33.3 0.0 0.0057 16.0 0.0 2.5 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_25 PF13481.1 gi|257387828|ref|YP_003177601.1| - 4.9e-08 32.6 5.5 0.38 10.1 0.1 4.5 2 2 2 4 4 4 2 AAA domain AAA_18 PF13238.1 gi|257387828|ref|YP_003177601.1| - 1.6e-07 31.7 0.0 0.0065 16.7 0.0 3.0 3 0 0 3 3 2 2 AAA domain Zeta_toxin PF06414.7 gi|257387828|ref|YP_003177601.1| - 3.2e-07 29.6 0.0 0.028 13.5 0.0 2.7 2 0 0 2 2 2 2 Zeta toxin Mg_chelatase PF01078.16 gi|257387828|ref|YP_003177601.1| - 8.2e-07 28.3 0.1 0.042 13.0 0.0 2.6 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.17 gi|257387828|ref|YP_003177601.1| - 1.1e-06 28.8 0.0 0.06 13.5 0.0 2.6 2 0 0 2 2 2 2 RNA helicase AAA_28 PF13521.1 gi|257387828|ref|YP_003177601.1| - 1.4e-06 28.3 0.1 0.013 15.4 0.0 2.9 3 0 0 3 3 2 2 AAA domain AAA_3 PF07726.6 gi|257387828|ref|YP_003177601.1| - 3.9e-06 26.5 0.0 0.063 12.8 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) Arch_ATPase PF01637.13 gi|257387828|ref|YP_003177601.1| - 5.4e-06 26.2 0.0 0.066 12.8 0.0 3.6 2 2 1 3 3 3 1 Archaeal ATPase Sigma54_activat PF00158.21 gi|257387828|ref|YP_003177601.1| - 6.1e-06 25.8 0.1 0.16 11.4 0.0 3.2 3 1 0 3 3 3 2 Sigma-54 interaction domain KaiC PF06745.8 gi|257387828|ref|YP_003177601.1| - 1.2e-05 24.5 1.3 0.39 9.8 0.0 3.7 3 1 1 4 4 3 2 KaiC NB-ARC PF00931.17 gi|257387828|ref|YP_003177601.1| - 1.6e-05 23.9 0.0 0.039 12.8 0.0 2.3 2 0 0 2 2 2 2 NB-ARC domain PhoH PF02562.11 gi|257387828|ref|YP_003177601.1| - 2e-05 23.9 0.4 0.16 11.1 0.0 3.1 3 0 0 3 3 3 2 PhoH-like protein DUF815 PF05673.8 gi|257387828|ref|YP_003177601.1| - 2e-05 23.6 0.0 0.17 10.7 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF815) AAA_24 PF13479.1 gi|257387828|ref|YP_003177601.1| - 2.1e-05 24.2 0.2 0.061 12.8 0.0 2.7 2 0 0 2 2 2 2 AAA domain Sigma54_activ_2 PF14532.1 gi|257387828|ref|YP_003177601.1| - 3.1e-05 24.0 0.0 0.3 11.1 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain ABC_tran PF00005.22 gi|257387828|ref|YP_003177601.1| - 3.9e-05 23.9 0.0 0.44 10.8 0.0 2.6 2 0 0 2 2 2 2 ABC transporter NACHT PF05729.7 gi|257387828|ref|YP_003177601.1| - 4.2e-05 23.2 0.1 0.26 10.9 0.0 3.7 4 0 0 4 4 4 1 NACHT domain AAA_30 PF13604.1 gi|257387828|ref|YP_003177601.1| - 5.1e-05 22.9 0.1 0.43 10.1 0.0 3.1 3 0 0 3 3 3 2 AAA domain Parvo_NS1 PF01057.12 gi|257387828|ref|YP_003177601.1| - 0.00025 20.0 0.0 0.3 9.9 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 DUF2075 PF09848.4 gi|257387828|ref|YP_003177601.1| - 0.00026 20.0 0.0 0.28 10.0 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) AAA_11 PF13086.1 gi|257387828|ref|YP_003177601.1| - 0.00041 19.9 0.0 0.51 9.8 0.0 2.4 2 0 0 2 2 2 2 AAA domain NTPase_1 PF03266.10 gi|257387828|ref|YP_003177601.1| - 0.00051 19.7 0.4 1.8 8.2 0.0 3.4 2 1 1 3 3 3 2 NTPase SKI PF01202.17 gi|257387828|ref|YP_003177601.1| - 0.00058 19.7 0.0 0.3 10.9 0.0 2.5 2 0 0 2 2 2 1 Shikimate kinase IPT PF01745.11 gi|257387828|ref|YP_003177601.1| - 0.0016 17.6 0.6 0.56 9.3 0.0 2.7 3 0 0 3 3 3 1 Isopentenyl transferase UPF0079 PF02367.12 gi|257387828|ref|YP_003177601.1| - 0.0018 17.9 0.0 1.6 8.3 0.0 2.5 2 0 0 2 2 2 1 Uncharacterised P-loop hydrolase UPF0079 Bac_DnaA PF00308.13 gi|257387828|ref|YP_003177601.1| - 0.004 16.8 0.1 3.5 7.2 0.0 2.9 3 0 0 3 3 3 0 Bacterial dnaA protein KAP_NTPase PF07693.9 gi|257387828|ref|YP_003177601.1| - 0.0042 16.1 0.1 5.1 5.9 0.0 3.2 2 2 0 3 3 3 0 KAP family P-loop domain ResIII PF04851.10 gi|257387828|ref|YP_003177601.1| - 0.0048 16.7 0.0 3.6 7.3 0.0 2.5 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit CPT PF07931.7 gi|257387828|ref|YP_003177601.1| - 0.02 14.5 0.0 3.1 7.3 0.0 2.4 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein Viral_helicase1 PF01443.13 gi|257387828|ref|YP_003177601.1| - 0.02 14.3 0.0 1.4 8.3 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase AFG1_ATPase PF03969.11 gi|257387828|ref|YP_003177601.1| - 0.029 13.1 0.0 1.9 7.2 0.0 2.2 2 0 0 2 2 2 0 AFG1-like ATPase KTI12 PF08433.5 gi|257387828|ref|YP_003177601.1| - 0.034 13.3 0.0 11 5.0 0.0 2.8 3 0 0 3 3 3 0 Chromatin associated protein KTI12 T2SE PF00437.15 gi|257387828|ref|YP_003177601.1| - 0.045 12.6 0.0 7.6 5.3 0.0 2.4 2 0 0 2 2 2 0 Type II/IV secretion system protein Torsin PF06309.6 gi|257387828|ref|YP_003177601.1| - 0.054 13.3 0.0 3.8 7.4 0.0 2.4 2 0 0 2 2 2 0 Torsin Cytidylate_kin2 PF13189.1 gi|257387828|ref|YP_003177601.1| - 0.071 13.0 0.0 2.1 8.2 0.0 2.3 2 0 0 2 2 2 0 Cytidylate kinase-like family Guanylate_kin PF00625.16 gi|257387828|ref|YP_003177601.1| - 0.1 12.0 0.4 36 3.7 0.0 3.4 3 1 1 4 4 3 0 Guanylate kinase Usp PF00582.21 gi|257387829|ref|YP_003177602.1| - 7.3e-07 29.4 0.1 9.9e-07 29.0 0.1 1.2 1 0 0 1 1 1 1 Universal stress protein family Glyco_hydro_3_C PF01915.17 gi|257387829|ref|YP_003177602.1| - 0.058 12.8 0.2 0.064 12.7 0.1 1.1 1 0 0 1 1 1 0 Glycosyl hydrolase family 3 C-terminal domain DUF111 PF01969.12 gi|257387830|ref|YP_003177603.1| - 2.3e-132 441.4 0.5 2.6e-132 441.2 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF111 Transcrip_reg PF01709.15 gi|257387830|ref|YP_003177603.1| - 0.15 11.1 0.0 0.27 10.3 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator SUR7 PF06687.7 gi|257387831|ref|YP_003177604.1| - 0.19 11.2 1.2 0.22 11.0 0.8 1.1 1 0 0 1 1 1 0 SUR7/PalI family DUF460 PF04312.8 gi|257387832|ref|YP_003177605.1| - 0.047 13.2 1.0 0.1 12.1 0.2 1.8 1 1 0 2 2 2 0 Protein of unknown function (DUF460) PGG PF13962.1 gi|257387833|ref|YP_003177606.1| - 0.11 12.1 0.3 0.11 12.1 0.2 2.2 2 1 0 2 2 2 0 Domain of unknown function Herpes_LMP1 PF05297.6 gi|257387833|ref|YP_003177606.1| - 3.2 6.5 6.2 4.7 6.0 4.3 1.3 1 0 0 1 1 1 0 Herpesvirus latent membrane protein 1 (LMP1) Rad51 PF08423.6 gi|257387834|ref|YP_003177607.1| - 6.2e-29 100.6 0.1 7.8e-29 100.3 0.1 1.0 1 0 0 1 1 1 1 Rad51 AAA_25 PF13481.1 gi|257387834|ref|YP_003177607.1| - 1.8e-15 56.8 0.7 2.7e-15 56.2 0.5 1.1 1 0 0 1 1 1 1 AAA domain RecA PF00154.16 gi|257387834|ref|YP_003177607.1| - 1.3e-09 37.5 3.7 2.3e-09 36.7 2.5 1.5 1 1 0 1 1 1 1 recA bacterial DNA recombination protein KaiC PF06745.8 gi|257387834|ref|YP_003177607.1| - 5.6e-09 35.4 0.0 1.2e-08 34.4 0.0 1.6 1 1 0 1 1 1 1 KaiC Zot PF05707.7 gi|257387834|ref|YP_003177607.1| - 4e-05 23.1 0.0 4.4e-05 23.0 0.0 1.1 1 0 0 1 1 1 1 Zonular occludens toxin (Zot) AAA_19 PF13245.1 gi|257387834|ref|YP_003177607.1| - 4.4e-05 23.1 0.5 0.00012 21.7 0.3 1.8 1 1 0 1 1 1 1 Part of AAA domain IstB_IS21 PF01695.12 gi|257387834|ref|YP_003177607.1| - 0.00071 19.0 0.4 0.0047 16.3 0.0 2.0 1 1 1 2 2 2 1 IstB-like ATP binding protein AAA_24 PF13479.1 gi|257387834|ref|YP_003177607.1| - 0.0061 16.1 0.0 0.012 15.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|257387834|ref|YP_003177607.1| - 0.011 15.2 0.0 0.43 9.9 0.0 2.3 1 1 0 2 2 2 0 AAA-like domain DnaB_C PF03796.10 gi|257387834|ref|YP_003177607.1| - 0.018 13.9 0.0 0.027 13.3 0.0 1.4 1 1 0 1 1 1 0 DnaB-like helicase C terminal domain Arch_ATPase PF01637.13 gi|257387834|ref|YP_003177607.1| - 0.056 13.1 0.0 0.063 12.9 0.0 1.1 1 0 0 1 1 1 0 Archaeal ATPase PAXNEB PF05625.6 gi|257387834|ref|YP_003177607.1| - 0.14 10.9 0.0 0.22 10.3 0.0 1.2 1 0 0 1 1 1 0 PAXNEB protein PhoU PF01895.14 gi|257387835|ref|YP_003177608.1| - 6.7e-35 119.4 11.3 1.5e-18 67.0 0.2 2.2 2 0 0 2 2 2 2 PhoU domain PhoU PF01895.14 gi|257387836|ref|YP_003177609.1| - 3.7e-34 117.0 9.7 9.7e-20 70.8 0.6 2.1 2 0 0 2 2 2 2 PhoU domain DUF2580 PF10824.3 gi|257387836|ref|YP_003177609.1| - 0.00038 20.7 5.8 0.017 15.4 0.2 2.5 2 0 0 2 2 2 2 Protein of unknown function (DUF2580) FUSC PF04632.7 gi|257387836|ref|YP_003177609.1| - 0.46 8.8 5.4 0.25 9.7 2.2 1.3 1 1 0 1 1 1 0 Fusaric acid resistance protein family DUF883 PF05957.8 gi|257387836|ref|YP_003177609.1| - 3.1 8.2 6.7 8 6.9 0.2 3.1 3 1 0 3 3 3 0 Bacterial protein of unknown function (DUF883) HAMP PF00672.20 gi|257387836|ref|YP_003177609.1| - 3.8 7.7 7.9 1.6 8.9 0.8 3.2 3 2 0 3 3 3 0 HAMP domain HAD_2 PF13419.1 gi|257387837|ref|YP_003177610.1| - 6.6e-16 59.0 0.4 9.5e-16 58.5 0.3 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|257387837|ref|YP_003177610.1| - 9.1e-12 44.5 0.1 1.7e-11 43.6 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|257387837|ref|YP_003177610.1| - 4.4e-07 30.5 0.1 2.2e-05 24.9 0.1 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|257387837|ref|YP_003177610.1| - 0.065 13.3 0.1 0.11 12.6 0.1 1.4 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase ABC_tran PF00005.22 gi|257387838|ref|YP_003177611.1| - 3.9e-30 104.9 0.0 5.9e-30 104.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|257387838|ref|YP_003177611.1| - 1.2e-13 51.7 0.0 1e-07 32.2 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|257387838|ref|YP_003177611.1| - 6e-09 35.4 1.0 1.1e-07 31.2 0.7 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.1 gi|257387838|ref|YP_003177611.1| - 0.00012 21.2 0.0 0.061 12.3 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.1 gi|257387838|ref|YP_003177611.1| - 0.00016 21.8 0.0 0.00043 20.4 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|257387838|ref|YP_003177611.1| - 0.0004 19.8 0.0 0.00098 18.6 0.0 1.6 2 0 0 2 2 1 1 P-loop containing region of AAA domain DUF258 PF03193.11 gi|257387838|ref|YP_003177611.1| - 0.00096 18.3 0.0 0.0018 17.4 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_33 PF13671.1 gi|257387838|ref|YP_003177611.1| - 0.0032 17.3 0.0 0.0058 16.5 0.0 1.6 2 0 0 2 2 1 1 AAA domain AAA_23 PF13476.1 gi|257387838|ref|YP_003177611.1| - 0.0046 17.3 0.0 0.03 14.6 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_10 PF12846.2 gi|257387838|ref|YP_003177611.1| - 0.0056 16.1 0.9 0.058 12.8 0.1 2.1 1 1 1 2 2 2 1 AAA-like domain AAA_16 PF13191.1 gi|257387838|ref|YP_003177611.1| - 0.0058 16.6 2.5 0.1 12.6 1.8 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.1 gi|257387838|ref|YP_003177611.1| - 0.015 16.0 0.2 0.05 14.4 0.2 2.1 1 1 0 1 1 1 0 AAA domain DeoRC PF00455.17 gi|257387838|ref|YP_003177611.1| - 0.018 14.6 0.0 0.029 14.0 0.0 1.3 1 0 0 1 1 1 0 DeoR C terminal sensor domain AAA_25 PF13481.1 gi|257387838|ref|YP_003177611.1| - 0.022 14.1 0.3 0.15 11.4 0.0 2.2 2 1 0 2 2 2 0 AAA domain ABC_ATPase PF09818.4 gi|257387838|ref|YP_003177611.1| - 0.026 13.1 0.2 1.9 6.9 0.0 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class Arch_ATPase PF01637.13 gi|257387838|ref|YP_003177611.1| - 0.036 13.7 0.1 0.18 11.5 0.0 2.0 1 1 0 1 1 1 0 Archaeal ATPase Rad17 PF03215.10 gi|257387838|ref|YP_003177611.1| - 0.067 11.8 0.0 0.096 11.3 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein NACHT PF05729.7 gi|257387838|ref|YP_003177611.1| - 0.071 12.7 0.0 0.14 11.7 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_30 PF13604.1 gi|257387838|ref|YP_003177611.1| - 0.1 12.1 0.1 0.61 9.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.17 gi|257387838|ref|YP_003177611.1| - 0.12 12.5 0.0 0.31 11.2 0.0 1.7 2 0 0 2 2 1 0 RNA helicase AAA_19 PF13245.1 gi|257387838|ref|YP_003177611.1| - 0.12 12.1 0.0 21 4.9 0.0 2.4 2 0 0 2 2 2 0 Part of AAA domain AAA PF00004.24 gi|257387838|ref|YP_003177611.1| - 0.13 12.5 0.0 2 8.6 0.0 2.4 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) PRK PF00485.13 gi|257387838|ref|YP_003177611.1| - 0.13 11.8 0.0 0.31 10.5 0.0 1.8 1 1 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family NB-ARC PF00931.17 gi|257387838|ref|YP_003177611.1| - 0.14 10.9 0.0 0.28 10.0 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain AAA_14 PF13173.1 gi|257387838|ref|YP_003177611.1| - 0.14 12.0 0.0 0.31 10.9 0.0 1.7 1 1 0 1 1 1 0 AAA domain Adeno_IVa2 PF02456.10 gi|257387838|ref|YP_003177611.1| - 0.15 10.6 0.0 1 7.9 0.0 1.9 2 0 0 2 2 2 0 Adenovirus IVa2 protein Viral_helicase1 PF01443.13 gi|257387838|ref|YP_003177611.1| - 0.16 11.4 0.0 0.27 10.7 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase BPD_transp_1 PF00528.17 gi|257387839|ref|YP_003177612.1| - 6.8e-21 74.6 12.4 6.8e-21 74.6 8.6 4.5 2 2 3 5 5 5 2 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|257387840|ref|YP_003177613.1| - 7.3e-15 54.9 17.2 7.3e-15 54.9 11.9 2.2 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component PBP_like_2 PF12849.2 gi|257387841|ref|YP_003177614.1| - 3.6e-29 102.0 0.4 8.4e-29 100.9 0.3 1.5 1 1 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.2 gi|257387841|ref|YP_003177614.1| - 4.6e-18 64.8 0.0 6.8e-18 64.3 0.0 1.3 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_1 PF01547.20 gi|257387841|ref|YP_003177614.1| - 0.0042 16.8 0.1 0.18 11.4 0.0 2.2 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein RecT PF03837.9 gi|257387841|ref|YP_003177614.1| - 0.02 14.1 1.4 0.61 9.3 0.1 2.2 2 0 0 2 2 2 0 RecT family TAT_signal PF10518.4 gi|257387841|ref|YP_003177614.1| - 0.31 11.1 2.6 0.36 10.9 0.6 2.0 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence PhoU PF01895.14 gi|257387842|ref|YP_003177615.1| - 1.5e-25 89.4 4.9 7.1e-18 64.8 0.3 2.3 2 0 0 2 2 2 2 PhoU domain Antitoxin-MazE PF04014.13 gi|257387842|ref|YP_003177615.1| - 2.2e-09 36.8 0.0 4.1e-09 35.9 0.0 1.5 1 0 0 1 1 1 1 Antidote-toxin recognition MazE HisKA_3 PF07730.8 gi|257387842|ref|YP_003177615.1| - 0.79 10.1 8.8 8.5 6.8 1.2 3.5 2 1 1 3 3 3 0 Histidine kinase PP_kinase_C PF13090.1 gi|257387843|ref|YP_003177616.1| - 2.4e-147 490.1 0.0 3.2e-147 489.7 0.0 1.2 1 0 0 1 1 1 1 Polyphosphate kinase C-terminal domain PP_kinase PF02503.12 gi|257387843|ref|YP_003177616.1| - 8e-58 195.3 3.0 1.3e-57 194.7 2.1 1.3 1 0 0 1 1 1 1 Polyphosphate kinase middle domain PP_kinase_N PF13089.1 gi|257387843|ref|YP_003177616.1| - 1.4e-36 124.9 0.1 3.8e-36 123.5 0.0 1.8 2 0 0 2 2 2 1 Polyphosphate kinase N-terminal domain PLDc_2 PF13091.1 gi|257387843|ref|YP_003177616.1| - 7.6e-11 41.8 0.0 1.4e-05 24.8 0.0 2.5 2 0 0 2 2 2 2 PLD-like domain Polysacc_deac_1 PF01522.16 gi|257387843|ref|YP_003177616.1| - 0.076 12.6 0.5 0.54 9.8 0.0 2.2 2 0 0 2 2 2 0 Polysaccharide deacetylase Metallophos PF00149.23 gi|257387844|ref|YP_003177617.1| - 7.6e-09 35.2 0.2 3.8e-08 32.9 0.1 1.9 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.2 gi|257387844|ref|YP_003177617.1| - 9.2e-09 35.3 0.0 1.7e-08 34.4 0.0 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Ribosomal_S8e PF01201.17 gi|257387845|ref|YP_003177618.1| - 6.2e-33 113.7 4.6 6.8e-33 113.6 3.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S8e DUF2240 PF09999.4 gi|257387846|ref|YP_003177619.1| - 1.1e-51 174.0 0.2 1.2e-51 173.9 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2240) DUF99 PF01949.11 gi|257387846|ref|YP_003177619.1| - 0.027 13.5 0.0 0.043 12.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function DUF99 DUF3953 PF13129.1 gi|257387848|ref|YP_003177621.1| - 0.79 9.3 0.0 0.79 9.3 0.0 3.4 4 0 0 4 4 4 0 Protein of unknown function (DUF3953) Sm_multidrug_ex PF06695.6 gi|257387848|ref|YP_003177621.1| - 1.1 9.4 6.1 13 5.9 0.1 2.5 2 1 0 2 2 2 0 Putative small multi-drug export protein 7TMR-DISM_7TM PF07695.6 gi|257387848|ref|YP_003177621.1| - 8.4 5.9 14.0 2.3 7.8 1.6 2.0 2 0 0 2 2 2 0 7TM diverse intracellular signalling DUF973 PF06157.6 gi|257387848|ref|YP_003177621.1| - 9.3 5.1 13.0 1.2 7.9 1.3 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF973) OMPdecase PF00215.19 gi|257387849|ref|YP_003177622.1| - 2.7e-34 118.5 0.0 3.2e-34 118.2 0.0 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family DUF2859 PF11072.3 gi|257387849|ref|YP_003177622.1| - 0.038 13.4 0.0 0.077 12.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2859) PQQ_2 PF13360.1 gi|257387851|ref|YP_003177624.1| - 2.2e-29 102.6 5.6 2.2e-15 56.7 0.5 3.0 2 1 1 3 3 3 3 PQQ-like domain PQQ_3 PF13570.1 gi|257387851|ref|YP_003177624.1| - 5.6e-17 61.4 6.9 0.00057 20.0 0.0 6.6 6 0 0 6 6 6 5 PQQ-like domain PQQ PF01011.16 gi|257387851|ref|YP_003177624.1| - 3.5e-14 51.5 0.0 0.0016 17.8 0.0 5.7 5 0 0 5 5 5 5 PQQ enzyme repeat MafB19-deam PF14437.1 gi|257387851|ref|YP_003177624.1| - 0.12 12.0 0.0 0.23 11.0 0.0 1.4 1 0 0 1 1 1 0 MafB19-like deaminase RecR PF02132.10 gi|257387852|ref|YP_003177625.1| - 0.029 13.8 1.6 0.029 13.8 1.1 2.2 2 0 0 2 2 2 0 RecR protein Prok-RING_2 PF14445.1 gi|257387852|ref|YP_003177625.1| - 0.26 11.2 7.1 0.37 10.7 4.9 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 2 Sgf11 PF08209.6 gi|257387852|ref|YP_003177625.1| - 0.35 10.2 0.2 0.35 10.2 0.2 2.1 3 0 0 3 3 3 0 Sgf11 (transcriptional regulation protein) zf-HIT PF04438.11 gi|257387852|ref|YP_003177625.1| - 0.42 10.3 4.0 0.33 10.6 0.7 2.0 2 0 0 2 2 2 0 HIT zinc finger zf-AN1 PF01428.11 gi|257387852|ref|YP_003177625.1| - 1.1 9.2 7.3 2.2 8.1 5.0 1.6 1 1 0 1 1 1 0 AN1-like Zinc finger Laminin_EGF PF00053.19 gi|257387852|ref|YP_003177625.1| - 1.3 9.0 8.8 4.8 7.2 6.3 1.8 1 1 1 2 2 2 0 Laminin EGF-like (Domains III and V) FYVE PF01363.16 gi|257387852|ref|YP_003177625.1| - 2.4 8.1 7.0 7.2 6.5 4.9 1.9 1 1 0 1 1 1 0 FYVE zinc finger DUF2180 PF09947.4 gi|257387852|ref|YP_003177625.1| - 2.7 7.8 8.3 4.2 7.1 4.1 2.3 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2180) DnaJ PF00226.26 gi|257387853|ref|YP_003177626.1| - 1.5e-14 53.4 0.1 2.2e-14 52.9 0.1 1.3 1 0 0 1 1 1 1 DnaJ domain RPT PF13446.1 gi|257387853|ref|YP_003177626.1| - 0.022 14.1 0.0 0.04 13.3 0.0 1.5 1 1 0 1 1 1 0 A repeated domain in UCH-protein MMPL PF03176.10 gi|257387853|ref|YP_003177626.1| - 0.7 8.5 3.0 0.34 9.5 0.5 1.5 2 0 0 2 2 2 0 MMPL family TetR_C_6 PF13977.1 gi|257387854|ref|YP_003177627.1| - 2.6e-18 66.1 2.6 2.6e-18 66.1 1.8 1.9 2 1 0 2 2 2 1 Bacterial transcriptional repressor TetR_N PF00440.18 gi|257387854|ref|YP_003177627.1| - 4.9e-10 38.8 0.9 8.8e-10 38.0 0.7 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family Cupin_4 PF08007.7 gi|257387854|ref|YP_003177627.1| - 0.019 14.2 0.1 0.023 13.9 0.0 1.2 1 0 0 1 1 1 0 Cupin superfamily protein Sigma70_r4 PF04545.11 gi|257387854|ref|YP_003177627.1| - 0.027 13.7 0.0 0.051 12.9 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 Autoind_bind PF03472.10 gi|257387854|ref|YP_003177627.1| - 0.073 12.3 0.2 0.34 10.2 0.0 2.1 2 0 0 2 2 2 0 Autoinducer binding domain PEP-utilisers_N PF05524.8 gi|257387854|ref|YP_003177627.1| - 0.14 11.9 0.1 0.14 11.9 0.1 2.1 2 1 1 3 3 3 0 PEP-utilising enzyme, N-terminal TetR_C_6 PF13977.1 gi|257387855|ref|YP_003177628.1| - 1.2e-15 57.4 3.4 1.2e-15 57.4 2.3 1.9 2 0 0 2 2 2 1 Bacterial transcriptional repressor TetR_N PF00440.18 gi|257387855|ref|YP_003177628.1| - 7.4e-12 44.7 0.5 1.4e-11 43.8 0.1 1.7 2 0 0 2 2 2 1 Bacterial regulatory proteins, tetR family HTH_38 PF13936.1 gi|257387855|ref|YP_003177628.1| - 0.024 14.2 0.0 0.2 11.2 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain WHG PF13305.1 gi|257387855|ref|YP_003177628.1| - 0.12 12.9 0.2 0.8 10.3 0.2 2.5 1 1 0 1 1 1 0 WHG domain MatE PF01554.13 gi|257387856|ref|YP_003177629.1| - 3.2e-61 205.6 41.6 1.9e-34 118.6 12.4 2.9 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.1 gi|257387856|ref|YP_003177629.1| - 0.00068 19.4 22.1 0.0013 18.4 9.6 5.2 4 3 0 4 4 4 2 Polysaccharide biosynthesis C-terminal domain Polysacc_synt_3 PF13440.1 gi|257387856|ref|YP_003177629.1| - 0.22 10.9 53.2 0.88 8.9 11.5 3.4 1 1 2 3 3 3 0 Polysaccharide biosynthesis protein Prominin PF05478.6 gi|257387856|ref|YP_003177629.1| - 1.7 6.0 3.3 3 5.2 2.3 1.3 1 0 0 1 1 1 0 Prominin Hydrolase_3 PF08282.7 gi|257387857|ref|YP_003177630.1| - 1.7e-22 80.2 0.0 7.4e-15 55.2 0.0 2.0 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.8 gi|257387857|ref|YP_003177630.1| - 3.4e-08 33.1 0.0 5.7e-07 29.0 0.0 2.1 2 0 0 2 2 2 1 Sucrose-6F-phosphate phosphohydrolase Hydrolase PF00702.21 gi|257387857|ref|YP_003177630.1| - 1.2e-06 29.1 0.4 0.00015 22.2 0.3 2.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|257387857|ref|YP_003177630.1| - 0.00044 20.4 0.6 0.01 16.0 0.0 2.4 1 1 1 2 2 2 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|257387857|ref|YP_003177630.1| - 0.002 18.3 0.0 0.033 14.4 0.0 2.2 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase SBF PF01758.11 gi|257387858|ref|YP_003177631.1| - 1.7e-46 157.9 11.5 1.7e-46 157.9 8.0 2.1 2 0 0 2 2 2 1 Sodium Bile acid symporter family LMWPc PF01451.16 gi|257387859|ref|YP_003177632.1| - 2.2e-29 102.5 0.1 2.6e-29 102.3 0.1 1.1 1 0 0 1 1 1 1 Low molecular weight phosphotyrosine protein phosphatase DUF3525 PF12039.3 gi|257387859|ref|YP_003177632.1| - 0.0097 14.4 0.0 0.0097 14.4 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3525) HTH_5 PF01022.15 gi|257387860|ref|YP_003177633.1| - 5e-13 48.4 0.2 5e-13 48.4 0.1 1.6 2 0 0 2 2 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|257387860|ref|YP_003177633.1| - 4.8e-09 35.8 0.5 9.9e-09 34.8 0.4 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|257387860|ref|YP_003177633.1| - 0.00014 21.5 0.0 0.00023 20.7 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.1 gi|257387860|ref|YP_003177633.1| - 0.00066 19.9 0.2 0.0016 18.6 0.0 1.7 2 1 0 2 2 1 1 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|257387860|ref|YP_003177633.1| - 0.0041 16.7 0.2 0.0087 15.7 0.2 1.6 1 1 0 1 1 1 1 MarR family MarR PF01047.17 gi|257387860|ref|YP_003177633.1| - 0.0066 16.1 0.1 0.015 15.0 0.0 1.7 2 0 0 2 2 2 1 MarR family HTH_23 PF13384.1 gi|257387860|ref|YP_003177633.1| - 0.013 15.1 0.0 0.024 14.3 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain PaaX PF07848.7 gi|257387860|ref|YP_003177633.1| - 0.016 15.1 0.0 0.031 14.2 0.0 1.5 1 0 0 1 1 1 0 PaaX-like protein Rrf2 PF02082.15 gi|257387860|ref|YP_003177633.1| - 0.029 14.5 0.0 0.048 13.7 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator HTH_34 PF13601.1 gi|257387860|ref|YP_003177633.1| - 0.034 14.1 0.0 0.056 13.4 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain Mago-bind PF09282.5 gi|257387860|ref|YP_003177633.1| - 0.041 13.4 0.4 0.064 12.8 0.3 1.3 1 0 0 1 1 1 0 Mago binding DUF2250 PF10007.4 gi|257387860|ref|YP_003177633.1| - 0.041 13.7 0.0 0.063 13.1 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_IclR PF09339.5 gi|257387860|ref|YP_003177633.1| - 0.042 13.4 1.4 0.74 9.4 0.0 2.5 3 0 0 3 3 2 0 IclR helix-turn-helix domain GntR PF00392.16 gi|257387860|ref|YP_003177633.1| - 0.053 12.9 0.0 0.095 12.1 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family DUF4423 PF14394.1 gi|257387860|ref|YP_003177633.1| - 0.072 12.6 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) Penicillinase_R PF03965.11 gi|257387860|ref|YP_003177633.1| - 0.08 13.0 0.0 0.25 11.4 0.0 1.7 2 0 0 2 2 2 0 Penicillinase repressor dTMP_synthase PF02593.9 gi|257387860|ref|YP_003177633.1| - 0.083 12.2 0.1 0.091 12.0 0.0 1.1 1 0 0 1 1 1 0 Thymidylate synthase DUF480 PF04337.7 gi|257387860|ref|YP_003177633.1| - 0.11 12.3 0.0 0.24 11.2 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF480 PAX PF00292.13 gi|257387860|ref|YP_003177633.1| - 0.11 12.1 0.0 0.23 11.1 0.0 1.5 2 0 0 2 2 2 0 'Paired box' domain DUF742 PF05331.6 gi|257387860|ref|YP_003177633.1| - 0.13 11.9 0.3 0.2 11.2 0.2 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF742) HTH_11 PF08279.7 gi|257387860|ref|YP_003177633.1| - 0.13 11.9 0.0 0.25 11.0 0.0 1.5 1 0 0 1 1 1 0 HTH domain Fe_dep_repress PF01325.14 gi|257387860|ref|YP_003177633.1| - 0.13 12.1 0.0 0.25 11.3 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain GTP_EFTU PF00009.22 gi|257387861|ref|YP_003177634.1| - 6.8e-33 113.6 0.0 1e-32 113.1 0.0 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.12 gi|257387861|ref|YP_003177634.1| - 1.2e-16 60.7 0.0 2.5e-16 59.6 0.0 1.6 1 0 0 1 1 1 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.20 gi|257387861|ref|YP_003177634.1| - 5.7e-10 39.1 1.8 1.2e-09 38.1 0.2 2.4 2 0 0 2 2 2 1 Elongation factor Tu domain 2 GTP_EFTU_D4 PF14578.1 gi|257387861|ref|YP_003177634.1| - 0.00061 19.3 0.2 0.002 17.7 0.1 1.9 1 0 0 1 1 1 1 Elongation factor Tu domain 4 ArgK PF03308.11 gi|257387861|ref|YP_003177634.1| - 0.0019 17.0 0.7 0.13 11.0 0.0 2.6 3 0 0 3 3 3 1 ArgK protein ATP_bind_1 PF03029.12 gi|257387861|ref|YP_003177634.1| - 0.0026 17.3 1.0 0.0086 15.6 0.0 1.9 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein MMR_HSR1 PF01926.18 gi|257387861|ref|YP_003177634.1| - 0.021 14.8 0.0 0.041 13.8 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase Cdc6_C PF09079.6 gi|257387862|ref|YP_003177635.1| - 1.9e-17 62.7 0.0 4.2e-17 61.6 0.0 1.6 1 0 0 1 1 1 1 CDC6, C terminal AAA_22 PF13401.1 gi|257387862|ref|YP_003177635.1| - 2.5e-09 37.3 0.0 5.8e-09 36.1 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|257387862|ref|YP_003177635.1| - 3.4e-09 36.9 1.3 1.2e-07 31.9 0.0 3.0 2 1 0 2 2 2 1 AAA ATPase domain NB-ARC PF00931.17 gi|257387862|ref|YP_003177635.1| - 0.0015 17.4 0.0 0.0021 16.9 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain RNA_helicase PF00910.17 gi|257387862|ref|YP_003177635.1| - 0.0049 17.0 0.0 0.01 15.9 0.0 1.6 1 0 0 1 1 1 1 RNA helicase Arch_ATPase PF01637.13 gi|257387862|ref|YP_003177635.1| - 0.013 15.1 0.0 0.049 13.3 0.0 1.9 1 1 0 1 1 1 0 Archaeal ATPase TrwB_AAD_bind PF10412.4 gi|257387862|ref|YP_003177635.1| - 0.019 13.6 0.0 1.5 7.3 0.0 2.4 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain DUF815 PF05673.8 gi|257387862|ref|YP_003177635.1| - 0.057 12.3 0.0 0.1 11.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) PIF1 PF05970.9 gi|257387862|ref|YP_003177635.1| - 0.084 11.8 0.0 0.14 11.0 0.0 1.3 1 0 0 1 1 1 0 PIF1-like helicase AAA_24 PF13479.1 gi|257387862|ref|YP_003177635.1| - 0.084 12.4 0.0 0.17 11.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|257387862|ref|YP_003177635.1| - 0.088 13.0 0.0 0.54 10.4 0.0 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) KAP_NTPase PF07693.9 gi|257387862|ref|YP_003177635.1| - 0.12 11.3 0.0 0.17 10.8 0.0 1.4 1 1 0 1 1 1 0 KAP family P-loop domain NACHT PF05729.7 gi|257387862|ref|YP_003177635.1| - 0.14 11.7 0.0 0.32 10.6 0.0 1.7 1 1 0 1 1 1 0 NACHT domain MCH PF02289.11 gi|257387864|ref|YP_003177637.1| - 2.6e-84 282.9 1.2 2.9e-84 282.7 0.8 1.0 1 0 0 1 1 1 1 Cyclohydrolase (MCH) CopD PF05425.8 gi|257387865|ref|YP_003177638.1| - 0.00034 20.7 1.5 0.00036 20.6 1.0 1.0 1 0 0 1 1 1 1 Copper resistance protein D DUF2065 PF09838.4 gi|257387865|ref|YP_003177638.1| - 0.0022 17.6 2.2 0.32 10.7 0.1 2.1 2 0 0 2 2 2 2 Uncharacterized protein conserved in bacteria (DUF2065) Photo_RC PF00124.14 gi|257387865|ref|YP_003177638.1| - 0.09 11.7 0.3 0.12 11.3 0.2 1.2 1 0 0 1 1 1 0 Photosynthetic reaction centre protein DUF3185 PF11381.3 gi|257387865|ref|YP_003177638.1| - 7.1 6.4 7.3 13 5.6 0.8 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3185) DUF77 PF01910.12 gi|257387866|ref|YP_003177639.1| - 7.1e-22 76.8 0.3 8.1e-22 76.7 0.2 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF77 Response_reg PF00072.19 gi|257387868|ref|YP_003177641.1| - 4e-12 46.1 0.4 6.5e-12 45.4 0.3 1.3 1 0 0 1 1 1 1 Response regulator receiver domain HalX PF08663.5 gi|257387868|ref|YP_003177641.1| - 8.7e-10 38.4 8.0 8.7e-10 38.4 5.5 2.3 2 1 0 2 2 2 1 HalX domain FlxA PF14282.1 gi|257387868|ref|YP_003177641.1| - 0.014 15.3 0.4 0.022 14.7 0.3 1.2 1 0 0 1 1 1 0 FlxA-like protein DUF4140 PF13600.1 gi|257387868|ref|YP_003177641.1| - 0.043 14.2 3.2 0.33 11.4 1.2 2.2 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) UBN2 PF14223.1 gi|257387868|ref|YP_003177641.1| - 0.073 12.8 0.2 0.21 11.4 0.1 1.7 2 0 0 2 2 2 0 gag-polypeptide of LTR copia-type BBP1_C PF15272.1 gi|257387868|ref|YP_003177641.1| - 0.093 12.2 1.8 0.14 11.6 1.3 1.3 1 0 0 1 1 1 0 Spindle pole body component BBP1, C-terminal DivIC PF04977.10 gi|257387868|ref|YP_003177641.1| - 0.73 9.3 2.9 0.66 9.5 0.6 2.0 2 1 0 2 2 2 0 Septum formation initiator ABC_tran PF00005.22 gi|257387869|ref|YP_003177642.1| - 3.1e-33 114.9 0.0 5.4e-33 114.1 0.0 1.4 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.5 gi|257387869|ref|YP_003177642.1| - 1.2e-09 37.9 0.5 4.8e-09 36.0 0.2 2.2 2 0 0 2 2 2 1 TOBE domain AAA_21 PF13304.1 gi|257387869|ref|YP_003177642.1| - 4.2e-07 30.2 0.0 0.0047 16.9 0.0 2.2 2 0 0 2 2 2 2 AAA domain TOBE PF03459.12 gi|257387869|ref|YP_003177642.1| - 5.4e-05 23.2 0.2 0.00031 20.7 0.1 2.2 2 0 0 2 2 2 1 TOBE domain AAA_33 PF13671.1 gi|257387869|ref|YP_003177642.1| - 0.00022 21.1 0.0 0.00049 19.9 0.0 1.8 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|257387869|ref|YP_003177642.1| - 0.00022 20.5 0.2 0.0009 18.5 0.2 1.8 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|257387869|ref|YP_003177642.1| - 0.0009 19.2 0.0 0.0025 17.8 0.0 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.1 gi|257387869|ref|YP_003177642.1| - 0.00097 19.2 0.0 0.0027 17.8 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_17 PF13207.1 gi|257387869|ref|YP_003177642.1| - 0.0031 18.3 0.1 0.0066 17.2 0.1 1.8 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|257387869|ref|YP_003177642.1| - 0.0044 16.2 0.0 0.0081 15.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|257387869|ref|YP_003177642.1| - 0.011 15.2 0.0 0.029 13.9 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_18 PF13238.1 gi|257387869|ref|YP_003177642.1| - 0.013 15.8 0.0 0.024 14.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain Rad17 PF03215.10 gi|257387869|ref|YP_003177642.1| - 0.014 14.0 0.0 0.019 13.6 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_10 PF12846.2 gi|257387869|ref|YP_003177642.1| - 0.016 14.7 0.0 0.045 13.2 0.0 1.8 2 0 0 2 2 2 0 AAA-like domain AAA_15 PF13175.1 gi|257387869|ref|YP_003177642.1| - 0.018 14.1 0.0 0.23 10.4 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain AAA_25 PF13481.1 gi|257387869|ref|YP_003177642.1| - 0.033 13.5 0.0 0.3 10.4 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA PF00004.24 gi|257387869|ref|YP_003177642.1| - 0.034 14.3 0.0 0.14 12.3 0.0 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Miro PF08477.8 gi|257387869|ref|YP_003177642.1| - 0.035 14.6 0.0 0.087 13.3 0.0 1.6 1 0 0 1 1 1 0 Miro-like protein AAA_28 PF13521.1 gi|257387869|ref|YP_003177642.1| - 0.049 13.5 0.0 0.1 12.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|257387869|ref|YP_003177642.1| - 0.085 12.7 0.0 0.19 11.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|257387869|ref|YP_003177642.1| - 0.089 12.9 0.2 0.79 9.9 0.1 2.4 2 1 0 2 2 2 0 RNA helicase AAA_23 PF13476.1 gi|257387869|ref|YP_003177642.1| - 0.1 12.8 0.0 0.15 12.3 0.0 1.5 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|257387869|ref|YP_003177642.1| - 0.12 11.4 0.0 0.26 10.3 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin MobB PF03205.9 gi|257387869|ref|YP_003177642.1| - 0.13 11.9 0.2 0.24 11.0 0.1 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B BPD_transp_1 PF00528.17 gi|257387870|ref|YP_003177643.1| - 8.4e-13 48.2 12.9 8.4e-13 48.2 9.0 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component PsbL PF02419.12 gi|257387870|ref|YP_003177643.1| - 0.1 12.0 0.9 2.4 7.6 0.1 2.6 2 0 0 2 2 2 0 PsbL protein BPD_transp_1 PF00528.17 gi|257387871|ref|YP_003177644.1| - 6.7e-20 71.3 15.2 6.7e-20 71.3 10.5 1.8 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_8 PF13416.1 gi|257387872|ref|YP_003177645.1| - 1.2e-24 87.5 5.3 1.6e-24 87.1 3.7 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|257387872|ref|YP_003177645.1| - 5.6e-14 52.5 4.2 7.4e-14 52.1 2.9 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein URO-D PF01208.12 gi|257387872|ref|YP_003177645.1| - 0.00083 18.3 0.0 0.0013 17.7 0.0 1.2 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) SBP_bac_11 PF13531.1 gi|257387872|ref|YP_003177645.1| - 0.0037 16.9 0.1 0.011 15.3 0.1 1.7 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein CsgG PF03783.9 gi|257387872|ref|YP_003177645.1| - 0.021 13.9 0.0 0.033 13.2 0.0 1.2 1 0 0 1 1 1 0 Curli production assembly/transport component CsgG TAT_signal PF10518.4 gi|257387872|ref|YP_003177645.1| - 0.13 12.3 1.1 0.49 10.5 0.7 2.1 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF4013 PF13197.1 gi|257387873|ref|YP_003177646.1| - 6.9e-21 74.3 11.6 6.9e-21 74.3 8.1 1.5 1 1 1 2 2 2 1 Protein of unknown function (DUF4013) DUF3464 PF11947.3 gi|257387873|ref|YP_003177646.1| - 0.23 10.9 2.8 0.48 9.8 2.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3464) AA_permease_C PF13906.1 gi|257387873|ref|YP_003177646.1| - 6.6 6.6 7.7 6.1 6.7 1.7 3.1 3 0 0 3 3 3 0 C-terminus of AA_permease O-antigen_lig PF13425.1 gi|257387874|ref|YP_003177647.1| - 0.0077 16.2 4.1 0.0093 15.9 2.8 1.1 1 0 0 1 1 1 1 O-antigen ligase like membrane protein Methyltrn_RNA_3 PF02598.12 gi|257387875|ref|YP_003177648.1| - 6e-50 170.2 0.0 7.1e-50 169.9 0.0 1.0 1 0 0 1 1 1 1 Putative RNA methyltransferase Ribosomal_L3 PF00297.17 gi|257387876|ref|YP_003177649.1| - 4.4e-89 298.3 0.1 7.1e-89 297.6 0.0 1.3 2 0 0 2 2 2 1 Ribosomal protein L3 Ribosomal_L4 PF00573.17 gi|257387877|ref|YP_003177650.1| - 4.3e-42 143.6 0.1 4.9e-42 143.5 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family DUF4398 PF14346.1 gi|257387877|ref|YP_003177650.1| - 0.62 10.1 3.6 3.2 7.8 0.1 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF4398) Ribosomal_L23 PF00276.15 gi|257387878|ref|YP_003177651.1| - 1e-20 73.4 0.7 1.9e-20 72.5 0.5 1.4 1 1 0 1 1 1 1 Ribosomal protein L23 SRPRB PF09439.5 gi|257387878|ref|YP_003177651.1| - 0.047 12.9 0.1 0.06 12.5 0.0 1.2 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit Ribosomal_L2_C PF03947.13 gi|257387879|ref|YP_003177652.1| - 4e-45 152.7 2.3 5.4e-45 152.3 1.6 1.2 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.18 gi|257387879|ref|YP_003177652.1| - 4.2e-15 55.4 0.0 1.1e-14 54.1 0.0 1.7 1 0 0 1 1 1 1 Ribosomal Proteins L2, RNA binding domain Ribosomal_S19 PF00203.16 gi|257387880|ref|YP_003177653.1| - 1e-27 95.5 0.0 1.4e-27 95.1 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S19 Citrate_synt PF00285.16 gi|257387880|ref|YP_003177653.1| - 0.063 12.0 0.0 0.063 12.0 0.0 1.1 1 0 0 1 1 1 0 Citrate synthase Ribosomal_L22 PF00237.14 gi|257387881|ref|YP_003177654.1| - 1.1e-25 89.5 0.0 1.3e-25 89.3 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e KH_2 PF07650.12 gi|257387882|ref|YP_003177655.1| - 3.3e-16 58.6 0.0 9.5e-16 57.1 0.0 1.8 1 0 0 1 1 1 1 KH domain Ribosomal_S3_C PF00189.15 gi|257387882|ref|YP_003177655.1| - 2.1e-15 56.6 0.3 3.2e-15 56.0 0.2 1.3 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_1 PF00013.24 gi|257387882|ref|YP_003177655.1| - 0.0012 18.4 0.6 0.0012 18.4 0.4 2.5 3 0 0 3 3 3 1 KH domain KH_3 PF13014.1 gi|257387882|ref|YP_003177655.1| - 0.0092 15.6 3.2 0.026 14.1 0.9 2.7 2 0 0 2 2 2 1 KH domain FliG_N PF14842.1 gi|257387882|ref|YP_003177655.1| - 0.17 12.0 3.4 0.21 11.7 0.8 2.1 2 0 0 2 2 2 0 FliG N-terminal domain KH_4 PF13083.1 gi|257387882|ref|YP_003177655.1| - 0.21 11.2 0.1 0.21 11.2 0.1 2.4 2 0 0 2 2 2 0 KH domain Ribosomal_L29 PF00831.18 gi|257387883|ref|YP_003177656.1| - 1.4e-19 69.5 0.3 1.5e-19 69.3 0.2 1.0 1 0 0 1 1 1 1 Ribosomal L29 protein UPF0086 PF01868.11 gi|257387884|ref|YP_003177657.1| - 7.2e-26 89.6 0.0 8.1e-26 89.5 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function UPF0086 Ribosomal_S17 PF00366.15 gi|257387885|ref|YP_003177658.1| - 8.6e-29 99.3 0.5 1.1e-28 99.1 0.4 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 Ribosomal_L14 PF00238.14 gi|257387886|ref|YP_003177659.1| - 2.6e-37 127.2 0.0 3e-37 127.1 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e KOW PF00467.24 gi|257387887|ref|YP_003177660.1| - 1.3e-08 34.2 0.6 2.9e-08 33.1 0.1 1.8 2 0 0 2 2 2 1 KOW motif DapH_N PF08503.5 gi|257387887|ref|YP_003177660.1| - 0.079 13.0 0.0 6.7 6.9 0.0 2.1 1 1 1 2 2 2 0 Tetrahydrodipicolinate succinyltransferase N-terminal Fer2_4 PF13510.1 gi|257387887|ref|YP_003177660.1| - 0.085 12.6 0.1 3.2 7.6 0.0 2.3 2 0 0 2 2 2 0 2Fe-2S iron-sulfur cluster binding domain Ribosomal_S4e PF00900.15 gi|257387888|ref|YP_003177661.1| - 3.1e-22 78.0 0.0 6.5e-22 77.0 0.0 1.5 1 0 0 1 1 1 1 Ribosomal family S4e RS4NT PF08071.7 gi|257387888|ref|YP_003177661.1| - 2.8e-11 43.0 0.1 4.9e-11 42.3 0.1 1.3 1 0 0 1 1 1 1 RS4NT (NUC023) domain S4 PF01479.20 gi|257387888|ref|YP_003177661.1| - 4.2e-05 22.8 0.0 7.5e-05 22.0 0.0 1.5 1 0 0 1 1 1 1 S4 domain KOW PF00467.24 gi|257387888|ref|YP_003177661.1| - 0.0082 15.8 0.0 0.031 13.9 0.0 2.1 1 0 0 1 1 1 1 KOW motif Peptidase_S24 PF00717.18 gi|257387888|ref|YP_003177661.1| - 0.0098 15.5 0.5 0.035 13.7 0.2 2.2 2 1 0 2 2 2 1 Peptidase S24-like Ribosomal_L5_C PF00673.16 gi|257387889|ref|YP_003177662.1| - 9.1e-22 76.6 0.0 1.3e-21 76.1 0.0 1.2 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.14 gi|257387889|ref|YP_003177662.1| - 6.5e-16 57.8 0.0 1.1e-15 57.1 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein L5 Hint_2 PF13403.1 gi|257387889|ref|YP_003177662.1| - 0.11 12.4 0.0 0.7 9.8 0.0 1.9 2 0 0 2 2 2 0 Hint domain Ribosomal_S14 PF00253.16 gi|257387890|ref|YP_003177663.1| - 4.6e-15 54.7 0.3 4.9e-15 54.6 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e DUF4428 PF14471.1 gi|257387890|ref|YP_003177663.1| - 0.00036 20.2 0.2 0.00047 19.8 0.2 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4428) DUF2318 PF10080.4 gi|257387890|ref|YP_003177663.1| - 0.042 13.6 0.1 0.045 13.5 0.1 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2318) DUF1451 PF07295.6 gi|257387890|ref|YP_003177663.1| - 0.054 13.2 0.5 0.06 13.1 0.3 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) FYVE_2 PF02318.11 gi|257387890|ref|YP_003177663.1| - 0.072 12.9 0.2 0.072 12.9 0.1 1.1 1 0 0 1 1 1 0 FYVE-type zinc finger Ribosomal_L37ae PF01780.14 gi|257387890|ref|YP_003177663.1| - 0.072 12.9 0.4 0.077 12.8 0.3 1.1 1 0 0 1 1 1 0 Ribosomal L37ae protein family Ribosomal_S8 PF00410.14 gi|257387891|ref|YP_003177664.1| - 5.3e-23 81.2 0.0 7.2e-23 80.8 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_L6 PF00347.18 gi|257387892|ref|YP_003177665.1| - 1.5e-24 86.3 0.0 7.5e-12 45.5 0.0 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 BON PF04972.12 gi|257387892|ref|YP_003177665.1| - 0.0042 16.8 0.1 6.7 6.5 0.0 3.8 4 0 0 4 4 4 1 BON domain HSP20 PF00011.16 gi|257387892|ref|YP_003177665.1| - 0.13 12.1 0.2 1.2 9.0 0.0 2.5 3 1 0 3 3 3 0 Hsp20/alpha crystallin family Ribosomal_L32e PF01655.13 gi|257387893|ref|YP_003177666.1| - 5.8e-35 119.6 1.1 1.3e-34 118.5 0.7 1.6 2 0 0 2 2 2 1 Ribosomal protein L32 HHH_5 PF14520.1 gi|257387893|ref|YP_003177666.1| - 2.3e-12 46.8 6.7 2e-11 43.8 0.4 2.6 2 1 0 2 2 2 1 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.4 gi|257387893|ref|YP_003177666.1| - 1.6e-07 30.7 0.1 2e-06 27.2 0.1 2.4 1 1 1 2 2 2 1 Fingers domain of DNA polymerase lambda HHH PF00633.18 gi|257387893|ref|YP_003177666.1| - 3.3e-06 26.4 0.1 0.036 13.7 0.0 3.3 3 0 0 3 3 3 2 Helix-hairpin-helix motif Cdd1 PF11731.3 gi|257387893|ref|YP_003177666.1| - 3.5e-05 23.6 0.0 0.00043 20.1 0.0 2.5 2 2 1 3 3 3 1 Pathogenicity locus HHH_2 PF12826.2 gi|257387893|ref|YP_003177666.1| - 5.4e-05 22.9 0.2 0.00014 21.6 0.2 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_3 PF12836.2 gi|257387893|ref|YP_003177666.1| - 0.0035 17.2 0.1 0.19 11.6 0.0 2.4 1 1 1 2 2 2 1 Helix-hairpin-helix motif Spt5_N PF11942.3 gi|257387893|ref|YP_003177666.1| - 0.017 15.7 4.1 0.017 15.7 2.9 2.6 3 0 0 3 3 3 0 Spt5 transcription elongation factor, acidic N-terminal Ribosomal_S13 PF00416.17 gi|257387893|ref|YP_003177666.1| - 0.039 14.3 2.2 15 6.1 0.3 3.1 2 1 0 2 2 2 0 Ribosomal protein S13/S18 HHH_8 PF14716.1 gi|257387893|ref|YP_003177666.1| - 0.059 13.5 0.1 7.9 6.7 0.0 2.6 1 1 1 2 2 2 0 Helix-hairpin-helix domain Rpp20 PF12328.3 gi|257387893|ref|YP_003177666.1| - 0.11 12.1 3.1 0.31 10.7 2.1 1.7 1 0 0 1 1 1 0 Rpp20 subunit of nuclear RNase MRP and P Ribosomal_L19e PF01280.15 gi|257387894|ref|YP_003177667.1| - 8.7e-55 184.5 4.0 9.6e-55 184.4 2.8 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e DUF2855 PF11017.3 gi|257387894|ref|YP_003177667.1| - 0.07 12.2 0.7 0.076 12.1 0.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2855) PDGF_N PF04692.8 gi|257387894|ref|YP_003177667.1| - 0.097 13.1 0.5 0.52 10.8 0.0 2.2 2 1 0 2 2 2 0 Platelet-derived growth factor, N terminal region Ribosomal_L18p PF00861.17 gi|257387895|ref|YP_003177668.1| - 1.7e-34 118.5 0.0 2.2e-34 118.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal L18p/L5e family Ribosomal_S5 PF00333.15 gi|257387896|ref|YP_003177669.1| - 1.9e-28 97.9 0.5 3.2e-28 97.2 0.3 1.4 1 0 0 1 1 1 1 Ribosomal protein S5, N-terminal domain Ribosomal_S5_C PF03719.10 gi|257387896|ref|YP_003177669.1| - 1.2e-24 85.3 0.1 1.8e-24 84.7 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_L30 PF00327.15 gi|257387897|ref|YP_003177670.1| - 5.4e-11 41.8 0.0 8.9e-11 41.2 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e Ribosomal_L18e PF00828.14 gi|257387898|ref|YP_003177671.1| - 2.1e-27 96.0 1.7 2.1e-27 96.0 1.2 1.4 2 0 0 2 2 2 1 Ribosomal protein L18e/L15 SecY PF00344.15 gi|257387899|ref|YP_003177672.1| - 1.8e-92 309.9 20.9 2.2e-92 309.6 14.5 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.4 gi|257387899|ref|YP_003177672.1| - 1.7e-07 30.6 1.3 1e-06 28.0 0.9 2.5 1 0 0 1 1 1 1 Plug domain of Sec61p zinc_ribbon_5 PF13719.1 gi|257387900|ref|YP_003177673.1| - 0.0033 16.9 3.2 0.077 12.5 0.1 2.4 2 0 0 2 2 2 1 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|257387900|ref|YP_003177673.1| - 0.0085 15.7 2.4 0.19 11.4 0.1 2.4 2 0 0 2 2 2 1 zinc-ribbon domain FYDLN_acid PF09538.5 gi|257387900|ref|YP_003177673.1| - 0.061 13.9 0.1 5.4 7.6 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (FYDLN_acid) HypA PF01155.14 gi|257387900|ref|YP_003177673.1| - 0.07 12.8 5.7 0.62 9.7 0.5 2.1 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family zf-CHY PF05495.7 gi|257387900|ref|YP_003177673.1| - 0.3 11.2 4.0 24 5.1 3.2 2.3 1 1 1 2 2 2 0 CHY zinc finger FYVE PF01363.16 gi|257387900|ref|YP_003177673.1| - 0.68 9.8 5.5 3.8 7.4 3.8 2.1 1 1 0 1 1 1 0 FYVE zinc finger Zn-ribbon_8 PF09723.5 gi|257387900|ref|YP_003177673.1| - 0.74 9.8 12.0 0.22 11.5 0.9 2.8 2 1 0 2 2 2 0 Zinc ribbon domain zf-ribbon_3 PF13248.1 gi|257387900|ref|YP_003177673.1| - 1.3 8.3 13.5 0.085 12.0 2.0 3.0 3 1 0 3 3 3 0 zinc-ribbon domain DZR PF12773.2 gi|257387900|ref|YP_003177673.1| - 1.6 8.5 10.6 3.1e+02 1.2 7.5 2.7 1 1 0 1 1 1 0 Double zinc ribbon GATase_3 PF07685.9 gi|257387902|ref|YP_003177675.1| - 4.6e-34 117.3 0.1 1e-33 116.1 0.0 1.5 2 0 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|257387902|ref|YP_003177675.1| - 1e-25 90.2 0.0 1.5e-25 89.7 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|257387902|ref|YP_003177675.1| - 1.4e-17 63.9 0.0 3.5e-17 62.6 0.0 1.7 1 0 0 1 1 1 1 AAA domain MobB PF03205.9 gi|257387902|ref|YP_003177675.1| - 0.033 13.9 0.0 0.099 12.3 0.0 1.8 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B GATase PF00117.23 gi|257387902|ref|YP_003177675.1| - 0.036 13.4 0.0 0.069 12.5 0.0 1.4 1 0 0 1 1 1 0 Glutamine amidotransferase class-I AAA_17 PF13207.1 gi|257387902|ref|YP_003177675.1| - 0.071 13.9 0.0 0.18 12.5 0.0 1.7 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.10 gi|257387902|ref|YP_003177675.1| - 0.072 12.8 0.0 0.12 12.0 0.0 1.3 1 0 0 1 1 1 0 NTPase SNO PF01174.14 gi|257387902|ref|YP_003177675.1| - 0.12 11.9 0.0 0.22 11.1 0.0 1.3 1 0 0 1 1 1 0 SNO glutamine amidotransferase family GATase_3 PF07685.9 gi|257387903|ref|YP_003177676.1| - 7.7e-29 100.3 0.0 1.1e-28 99.8 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.18 gi|257387903|ref|YP_003177676.1| - 2.3e-19 69.5 0.0 5.1e-19 68.4 0.0 1.5 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.1 gi|257387903|ref|YP_003177676.1| - 8.3e-10 38.5 0.1 6.1e-06 25.9 0.0 2.2 1 1 1 2 2 2 2 AAA domain SNO PF01174.14 gi|257387903|ref|YP_003177676.1| - 0.01 15.4 0.0 0.02 14.5 0.0 1.4 1 0 0 1 1 1 0 SNO glutamine amidotransferase family CTP_synth_N PF06418.9 gi|257387903|ref|YP_003177676.1| - 0.16 11.0 0.0 0.24 10.4 0.0 1.1 1 0 0 1 1 1 0 CTP synthase N-terminus CbiX PF01903.12 gi|257387904|ref|YP_003177677.1| - 2.1e-26 92.0 0.6 3e-13 49.8 0.0 2.1 2 0 0 2 2 2 2 CbiX TP_methylase PF00590.15 gi|257387905|ref|YP_003177678.1| - 2.5e-31 109.0 0.3 2.9e-31 108.8 0.2 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases DUF3929 PF13066.1 gi|257387905|ref|YP_003177678.1| - 0.14 11.9 0.0 0.25 11.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3929) CbiC PF02570.10 gi|257387906|ref|YP_003177679.1| - 4.5e-50 169.8 1.1 5.5e-50 169.5 0.8 1.1 1 0 0 1 1 1 1 Precorrin-8X methylmutase CobN-Mg_chel PF02514.11 gi|257387907|ref|YP_003177680.1| - 0 1218.2 0.0 0 1217.9 0.0 1.0 1 0 0 1 1 1 1 CobN/Magnesium Chelatase LexA_DNA_bind PF01726.11 gi|257387907|ref|YP_003177680.1| - 0.022 14.3 0.0 0.053 13.0 0.0 1.6 1 0 0 1 1 1 0 LexA DNA binding domain VWA_2 PF13519.1 gi|257387908|ref|YP_003177681.1| - 3.8e-19 69.4 1.8 3.8e-19 69.4 1.2 1.9 2 0 0 2 2 2 1 von Willebrand factor type A domain Mg_chelatase PF01078.16 gi|257387908|ref|YP_003177681.1| - 1.1e-13 50.7 0.1 1.9e-08 33.7 0.0 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_5 PF07728.9 gi|257387908|ref|YP_003177681.1| - 4.7e-11 42.5 0.0 6.3e-06 25.9 0.0 2.4 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) VWA PF00092.23 gi|257387908|ref|YP_003177681.1| - 2.3e-10 40.4 0.0 3.8e-10 39.7 0.0 1.3 1 0 0 1 1 1 1 von Willebrand factor type A domain MCM PF00493.18 gi|257387908|ref|YP_003177681.1| - 0.00013 20.8 0.0 0.00058 18.7 0.0 1.9 2 0 0 2 2 2 1 MCM2/3/5 family Sigma54_activat PF00158.21 gi|257387908|ref|YP_003177681.1| - 0.00066 19.1 0.0 0.096 12.1 0.0 2.2 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_16 PF13191.1 gi|257387908|ref|YP_003177681.1| - 0.0046 16.9 0.8 0.024 14.6 0.0 2.5 3 1 0 3 3 3 1 AAA ATPase domain AAA_22 PF13401.1 gi|257387908|ref|YP_003177681.1| - 0.12 12.5 0.0 0.97 9.5 0.0 2.5 2 1 0 2 2 2 0 AAA domain CbtB PF09489.5 gi|257387909|ref|YP_003177682.1| - 1.8e-10 40.5 3.6 2.1e-10 40.3 2.5 1.2 1 0 0 1 1 1 1 Probable cobalt transporter subunit (CbtB) CbtA PF09490.5 gi|257387910|ref|YP_003177683.1| - 6.7e-13 48.4 12.6 9.4e-13 47.9 8.7 1.3 1 1 0 1 1 1 1 Probable cobalt transporter subunit (CbtA) DUF1636 PF07845.6 gi|257387911|ref|YP_003177684.1| - 0.012 15.8 0.0 0.015 15.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1636) 2Fe-2S_thioredx PF01257.14 gi|257387911|ref|YP_003177684.1| - 0.12 11.9 0.0 0.16 11.5 0.0 1.2 1 0 0 1 1 1 0 Thioredoxin-like [2Fe-2S] ferredoxin PQQ_2 PF13360.1 gi|257387912|ref|YP_003177685.1| - 4.8e-19 68.7 9.4 5e-11 42.5 1.3 3.2 1 1 2 3 3 3 3 PQQ-like domain PQQ_3 PF13570.1 gi|257387912|ref|YP_003177685.1| - 4.6e-11 42.6 28.6 0.016 15.5 0.0 8.5 8 1 0 8 8 8 5 PQQ-like domain PQQ PF01011.16 gi|257387912|ref|YP_003177685.1| - 1.3e-05 24.5 2.2 0.057 12.9 0.0 5.2 6 0 0 6 6 6 2 PQQ enzyme repeat FG-GAP_2 PF14312.1 gi|257387912|ref|YP_003177685.1| - 5.7 7.0 8.5 71 3.5 0.2 4.4 4 0 0 4 4 4 0 FG-GAP repeat DUF3209 PF11483.3 gi|257387913|ref|YP_003177686.1| - 5.1e-59 197.9 8.4 5.7e-59 197.8 5.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3209) Myosin_tail_1 PF01576.14 gi|257387913|ref|YP_003177686.1| - 0.0075 14.0 2.4 0.0084 13.8 1.7 1.1 1 0 0 1 1 1 1 Myosin tail APG6 PF04111.7 gi|257387913|ref|YP_003177686.1| - 0.11 11.4 0.1 0.11 11.5 0.1 1.1 1 0 0 1 1 1 0 Autophagy protein Apg6 HWE_HK PF07536.9 gi|257387913|ref|YP_003177686.1| - 0.15 12.4 1.6 1.7 9.1 0.1 2.5 1 1 1 2 2 2 0 HWE histidine kinase DUF1843 PF08898.5 gi|257387913|ref|YP_003177686.1| - 1.5 8.8 4.6 1.9 8.6 1.4 2.4 2 1 1 3 3 3 0 Domain of unknown function (DUF1843) CbiX PF01903.12 gi|257387914|ref|YP_003177687.1| - 4e-49 165.1 0.1 3.9e-25 88.0 0.3 2.5 2 0 0 2 2 2 2 CbiX 2Fe-2S_thioredx PF01257.14 gi|257387914|ref|YP_003177687.1| - 2.8e-08 33.4 0.1 5.1e-08 32.6 0.1 1.3 1 0 0 1 1 1 1 Thioredoxin-like [2Fe-2S] ferredoxin CbiK PF06180.6 gi|257387914|ref|YP_003177687.1| - 4.6e-05 22.6 0.0 0.01 14.9 0.0 2.1 1 1 1 2 2 2 2 Cobalt chelatase (CbiK) Suc_Fer-like PF06999.7 gi|257387914|ref|YP_003177687.1| - 0.019 14.9 0.0 0.051 13.6 0.0 1.6 1 1 0 1 1 1 0 Sucrase/ferredoxin-like TPP_enzyme_M PF00205.17 gi|257387914|ref|YP_003177687.1| - 0.042 13.5 0.1 0.15 11.8 0.1 1.9 2 0 0 2 2 2 0 Thiamine pyrophosphate enzyme, central domain DUF1636 PF07845.6 gi|257387914|ref|YP_003177687.1| - 0.13 12.5 1.1 2.3 8.4 0.1 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1636) LAGLIDADG_3 PF14528.1 gi|257387915|ref|YP_003177688.1| - 0.08 13.1 0.0 0.14 12.4 0.0 1.5 1 0 0 1 1 1 0 LAGLIDADG-like domain Fer4_15 PF13459.1 gi|257387916|ref|YP_003177689.1| - 1.3e-13 51.3 5.1 1.5e-13 51.1 3.5 1.0 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|257387916|ref|YP_003177689.1| - 0.0003 21.1 2.0 0.00041 20.6 1.4 1.4 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_19 PF06902.6 gi|257387916|ref|YP_003177689.1| - 0.027 14.2 0.5 0.16 11.8 0.3 1.9 1 1 0 1 1 1 0 Divergent 4Fe-4S mono-cluster TP_methylase PF00590.15 gi|257387917|ref|YP_003177690.1| - 2.1e-36 125.5 0.3 2.6e-36 125.3 0.2 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases DUF236 PF03057.9 gi|257387917|ref|YP_003177690.1| - 0.042 13.8 0.0 0.095 12.6 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function MSP1_C PF07462.6 gi|257387917|ref|YP_003177690.1| - 0.66 8.3 2.3 0.94 7.7 1.6 1.2 1 0 0 1 1 1 0 Merozoite surface protein 1 (MSP1) C-terminus TP_methylase PF00590.15 gi|257387918|ref|YP_003177691.1| - 2e-39 135.4 0.3 2.4e-39 135.2 0.2 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Radical_SAM PF04055.16 gi|257387918|ref|YP_003177691.1| - 0.12 12.5 0.0 0.23 11.6 0.0 1.4 1 0 0 1 1 1 0 Radical SAM superfamily CbiG_N PF11760.3 gi|257387919|ref|YP_003177692.1| - 4.7e-31 106.3 0.0 1e-30 105.2 0.0 1.6 1 0 0 1 1 1 1 Cobalamin synthesis G N-terminal CbiG_C PF01890.11 gi|257387919|ref|YP_003177692.1| - 3.3e-24 85.4 0.0 7.7e-24 84.2 0.0 1.7 1 0 0 1 1 1 1 Cobalamin synthesis G C-terminus CPSase_L_D2 PF02786.12 gi|257387919|ref|YP_003177692.1| - 0.084 12.1 0.2 1 8.5 0.0 2.4 2 0 0 2 2 2 0 Carbamoyl-phosphate synthase L chain, ATP binding domain TP_methylase PF00590.15 gi|257387920|ref|YP_003177693.1| - 9.6e-40 136.5 0.3 1.2e-39 136.2 0.2 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases RraB PF06877.6 gi|257387920|ref|YP_003177693.1| - 0.0038 17.8 0.0 0.025 15.2 0.0 2.2 2 0 0 2 2 2 1 Regulator of ribonuclease activity B Radical_SAM PF04055.16 gi|257387920|ref|YP_003177693.1| - 0.0073 16.4 0.0 0.013 15.6 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily TP_methylase PF00590.15 gi|257387921|ref|YP_003177694.1| - 3.9e-37 128.0 1.5 5.6e-37 127.4 1.0 1.2 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Glyoxalase_2 PF12681.2 gi|257387921|ref|YP_003177694.1| - 3.9e-05 24.1 0.9 0.00031 21.3 0.1 2.3 1 1 1 2 2 2 1 Glyoxalase-like domain Methyltransf_18 PF12847.2 gi|257387922|ref|YP_003177695.1| - 2.7e-08 34.3 0.1 3.3e-08 34.0 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|257387922|ref|YP_003177695.1| - 4.2e-06 26.2 0.1 1.6e-05 24.3 0.1 1.8 2 0 0 2 2 2 1 Methyltransferase small domain PCMT PF01135.14 gi|257387922|ref|YP_003177695.1| - 6.7e-05 22.5 0.0 0.00012 21.7 0.0 1.3 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_26 PF13659.1 gi|257387922|ref|YP_003177695.1| - 0.00019 21.4 0.5 0.00027 20.9 0.4 1.3 1 1 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|257387922|ref|YP_003177695.1| - 0.0021 17.4 0.0 0.0035 16.7 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 DOT1 PF08123.8 gi|257387922|ref|YP_003177695.1| - 0.0026 17.0 0.0 0.0041 16.4 0.0 1.3 1 0 0 1 1 1 1 Histone methylation protein DOT1 Methyltransf_11 PF08241.7 gi|257387922|ref|YP_003177695.1| - 0.0068 16.8 0.2 0.012 16.1 0.1 1.5 1 1 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|257387922|ref|YP_003177695.1| - 0.015 14.3 0.0 0.025 13.6 0.0 1.3 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_25 PF13649.1 gi|257387922|ref|YP_003177695.1| - 0.02 15.2 0.0 0.03 14.6 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain GATase_3 PF07685.9 gi|257387922|ref|YP_003177695.1| - 0.055 13.0 0.0 0.11 12.1 0.0 1.5 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain CMAS PF02353.15 gi|257387922|ref|YP_003177695.1| - 0.12 11.4 0.0 0.19 10.7 0.0 1.3 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Response_reg PF00072.19 gi|257387923|ref|YP_003177696.1| - 4.6e-17 62.0 0.2 7.5e-17 61.3 0.2 1.3 1 0 0 1 1 1 1 Response regulator receiver domain HalX PF08663.5 gi|257387923|ref|YP_003177696.1| - 3.5e-15 55.7 6.1 3.5e-15 55.7 4.2 2.8 3 1 0 3 3 3 1 HalX domain DUF629 PF04780.7 gi|257387923|ref|YP_003177696.1| - 0.091 11.2 0.6 0.13 10.7 0.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF629) Mnd1 PF03962.10 gi|257387923|ref|YP_003177696.1| - 0.1 12.2 0.7 0.14 11.7 0.5 1.1 1 0 0 1 1 1 0 Mnd1 family TrkH PF02386.11 gi|257387924|ref|YP_003177697.1| - 1e-51 175.6 12.7 1.4e-51 175.1 5.1 2.2 2 0 0 2 2 2 2 Cation transport protein tRNA_NucTran2_2 PF13735.1 gi|257387924|ref|YP_003177697.1| - 0.16 11.8 0.3 0.33 10.7 0.1 1.6 2 0 0 2 2 2 0 tRNA nucleotidyltransferase domain 2 putative TrkA_N PF02254.13 gi|257387925|ref|YP_003177698.1| - 4.1e-49 165.4 13.0 5.6e-25 87.5 1.8 2.8 3 0 0 3 3 3 2 TrkA-N domain TrkA_C PF02080.16 gi|257387925|ref|YP_003177698.1| - 1.4e-27 95.0 14.1 6.1e-15 54.5 0.2 4.1 4 1 0 4 4 4 2 TrkA-C domain Shikimate_DH PF01488.15 gi|257387925|ref|YP_003177698.1| - 7.9e-13 48.6 2.2 7e-06 26.1 0.2 2.3 2 0 0 2 2 2 2 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.12 gi|257387925|ref|YP_003177698.1| - 1.6e-09 38.0 1.1 0.002 18.5 0.3 3.1 2 2 0 2 2 2 2 NADP oxidoreductase coenzyme F420-dependent NAD_binding_7 PF13241.1 gi|257387925|ref|YP_003177698.1| - 1.1e-08 35.2 3.2 0.0011 19.1 0.6 2.5 2 0 0 2 2 2 2 Putative NAD(P)-binding Pyr_redox PF00070.22 gi|257387925|ref|YP_003177698.1| - 2.7e-08 34.1 2.4 0.002 18.5 0.0 3.4 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Saccharop_dh PF03435.13 gi|257387925|ref|YP_003177698.1| - 2.6e-07 29.9 2.9 0.0075 15.2 0.0 2.1 2 0 0 2 2 2 2 Saccharopine dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|257387925|ref|YP_003177698.1| - 5.6e-07 29.4 0.1 0.046 13.4 0.0 2.7 3 0 0 3 3 3 2 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.13 gi|257387925|ref|YP_003177698.1| - 1.5e-06 27.9 0.4 0.0024 17.5 0.2 2.5 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_binding_3 PF01494.14 gi|257387925|ref|YP_003177698.1| - 4e-06 26.1 0.1 0.012 14.7 0.1 2.3 2 0 0 2 2 2 2 FAD binding domain ApbA PF02558.11 gi|257387925|ref|YP_003177698.1| - 6.6e-05 22.3 0.1 0.00052 19.4 0.0 2.2 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA DAO PF01266.19 gi|257387925|ref|YP_003177698.1| - 0.0001 21.3 0.6 0.00027 19.9 0.3 1.8 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|257387925|ref|YP_003177698.1| - 0.00025 20.9 1.4 0.3 10.9 0.5 2.6 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase XdhC_C PF13478.1 gi|257387925|ref|YP_003177698.1| - 0.00042 20.6 0.3 0.15 12.3 0.0 2.7 2 1 0 2 2 2 1 XdhC Rossmann domain NAD_binding_2 PF03446.10 gi|257387925|ref|YP_003177698.1| - 0.00085 19.1 0.1 0.25 11.1 0.0 2.4 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase UDPG_MGDP_dh_N PF03721.9 gi|257387925|ref|YP_003177698.1| - 0.00091 18.6 0.3 0.0037 16.6 0.1 2.2 3 0 0 3 3 3 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|257387925|ref|YP_003177698.1| - 0.0059 15.7 0.2 2.7 7.0 0.0 2.6 2 1 0 2 2 2 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Pyr_redox_3 PF13738.1 gi|257387925|ref|YP_003177698.1| - 0.027 14.5 0.5 7.2 6.6 0.0 2.7 2 1 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Rossmann-like PF10727.4 gi|257387925|ref|YP_003177698.1| - 0.05 13.3 1.8 9.4 5.9 0.1 2.8 2 0 0 2 2 2 0 Rossmann-like domain ADH_zinc_N PF00107.21 gi|257387925|ref|YP_003177698.1| - 0.078 12.5 6.7 0.083 12.4 0.0 3.7 4 1 1 5 5 5 0 Zinc-binding dehydrogenase NAD_binding_8 PF13450.1 gi|257387925|ref|YP_003177698.1| - 0.091 12.7 0.3 0.67 10.0 0.2 2.4 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.7 gi|257387925|ref|YP_003177698.1| - 0.11 11.3 0.3 0.71 8.7 0.1 2.1 2 0 0 2 2 2 0 Lycopene cyclase protein CPSase_L_chain PF00289.17 gi|257387925|ref|YP_003177698.1| - 0.12 12.5 0.4 16 5.6 0.0 2.8 3 0 0 3 3 2 0 Carbamoyl-phosphate synthase L chain, N-terminal domain TatD_DNase PF01026.16 gi|257387926|ref|YP_003177699.1| - 7.9e-22 77.6 0.0 5.1e-20 71.7 0.0 2.0 1 1 0 1 1 1 1 TatD related DNase AP_endonuc_2 PF01261.19 gi|257387926|ref|YP_003177699.1| - 0.056 12.7 0.1 0.11 11.8 0.1 1.4 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel NYN PF01936.13 gi|257387927|ref|YP_003177700.1| - 8.8e-21 74.7 0.0 1e-20 74.5 0.0 1.0 1 0 0 1 1 1 1 NYN domain CoA_binding_2 PF13380.1 gi|257387927|ref|YP_003177700.1| - 0.0087 16.2 0.4 0.2 11.8 0.1 1.9 1 1 1 2 2 2 1 CoA binding domain HAD_2 PF13419.1 gi|257387927|ref|YP_003177700.1| - 0.12 12.6 0.0 0.14 12.3 0.0 1.1 1 0 0 1 1 1 0 Haloacid dehalogenase-like hydrolase MFS_1 PF07690.11 gi|257387930|ref|YP_003177703.1| - 9.6e-32 110.0 58.5 1.2e-21 76.8 18.4 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily LacY_symp PF01306.14 gi|257387930|ref|YP_003177703.1| - 0.034 12.7 6.0 5 5.5 0.0 3.3 2 1 1 3 3 3 0 LacY proton/sugar symporter MFS_1_like PF12832.2 gi|257387930|ref|YP_003177703.1| - 0.04 13.7 0.3 9.5 6.0 0.1 2.8 2 0 0 2 2 2 0 MFS_1 like family Bac_luciferase PF00296.15 gi|257387931|ref|YP_003177704.1| - 8.6e-33 113.7 8.9 9.8e-33 113.5 6.1 1.1 1 0 0 1 1 1 1 Luciferase-like monooxygenase HTH_31 PF13560.1 gi|257387931|ref|YP_003177704.1| - 1.4 9.1 5.6 0.27 11.4 0.2 2.6 4 0 0 4 4 4 0 Helix-turn-helix domain MFS_1 PF07690.11 gi|257387932|ref|YP_003177705.1| - 1.2e-14 53.8 64.0 8.5e-06 24.7 6.9 3.0 1 1 2 3 3 3 3 Major Facilitator Superfamily Chloroplast_duf PF14476.1 gi|257387932|ref|YP_003177705.1| - 0.075 11.8 0.5 0.13 11.0 0.4 1.3 1 0 0 1 1 1 0 Petal formation-expressed MFS_2 PF13347.1 gi|257387932|ref|YP_003177705.1| - 0.56 8.5 32.3 3.3 5.9 21.3 2.8 1 1 0 1 1 1 0 MFS/sugar transport protein DsbB PF02600.11 gi|257387933|ref|YP_003177706.1| - 2.3e-29 102.2 9.9 4.9e-29 101.1 6.9 1.5 1 1 0 1 1 1 1 Disulfide bond formation protein DsbB O-antigen_lig PF13425.1 gi|257387933|ref|YP_003177706.1| - 0.034 14.1 1.6 0.044 13.7 0.0 1.9 1 1 0 1 1 1 0 O-antigen ligase like membrane protein Rubi_NSP_C PF12601.3 gi|257387933|ref|YP_003177706.1| - 0.11 12.4 0.2 0.24 11.3 0.1 1.7 1 0 0 1 1 1 0 Rubivirus non-structural protein Bac_Ubq_Cox PF01654.12 gi|257387934|ref|YP_003177707.1| - 8.4e-134 446.2 15.0 9.5e-134 446.0 10.4 1.0 1 0 0 1 1 1 1 Bacterial Cytochrome Ubiquinol Oxidase DUF3816 PF12822.2 gi|257387934|ref|YP_003177707.1| - 0.00013 21.9 9.8 0.0005 20.0 3.6 3.0 2 2 1 3 3 3 2 Protein of unknown function (DUF3816) Cyto_ox_2 PF02322.10 gi|257387935|ref|YP_003177708.1| - 2e-65 221.1 28.5 3.4e-65 220.3 19.8 1.3 1 1 0 1 1 1 1 Cytochrome oxidase subunit II DUF2776 PF10951.3 gi|257387935|ref|YP_003177708.1| - 0.00095 18.3 0.7 0.0017 17.5 0.5 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF2776) DDE_Tnp_1 PF01609.16 gi|257387938|ref|YP_003177711.1| - 0.017 14.6 0.0 0.019 14.5 0.0 1.2 1 0 0 1 1 1 0 Transposase DDE domain DDE_Tnp_2 PF04693.7 gi|257387938|ref|YP_003177711.1| - 0.063 12.2 0.0 0.076 12.0 0.0 1.1 1 0 0 1 1 1 0 Archaeal putative transposase ISC1217 GCV_T PF01571.16 gi|257387939|ref|YP_003177712.1| - 1.3e-59 201.1 0.2 1.7e-59 200.7 0.1 1.2 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.6 gi|257387939|ref|YP_003177712.1| - 8.1e-23 80.2 0.1 1.7e-22 79.2 0.1 1.5 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain TrmE_N PF10396.4 gi|257387939|ref|YP_003177712.1| - 0.03 14.3 0.0 0.067 13.1 0.0 1.5 1 0 0 1 1 1 0 GTP-binding protein TrmE N-terminus DUF3327 PF11806.3 gi|257387939|ref|YP_003177712.1| - 0.072 13.3 0.0 0.12 12.7 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3327) GCV_H PF01597.14 gi|257387940|ref|YP_003177713.1| - 1.5e-43 147.3 0.0 1.7e-43 147.1 0.0 1.0 1 0 0 1 1 1 1 Glycine cleavage H-protein Biotin_lipoyl PF00364.17 gi|257387940|ref|YP_003177713.1| - 0.0053 16.3 0.1 0.009 15.6 0.0 1.3 1 0 0 1 1 1 1 Biotin-requiring enzyme RnfC_N PF13375.1 gi|257387940|ref|YP_003177713.1| - 0.024 14.3 0.0 0.034 13.8 0.0 1.2 1 0 0 1 1 1 0 RnfC Barrel sandwich hybrid domain DUF2460 PF09343.5 gi|257387940|ref|YP_003177713.1| - 0.13 11.5 0.1 0.21 10.9 0.0 1.3 1 0 0 1 1 1 0 Conserved hypothetical protein 2217 (DUF2460) GDC-P PF02347.11 gi|257387942|ref|YP_003177715.1| - 9.2e-108 360.6 0.0 1.1e-107 360.3 0.0 1.0 1 0 0 1 1 1 1 Glycine cleavage system P-protein Cys_Met_Meta_PP PF01053.15 gi|257387942|ref|YP_003177715.1| - 0.00078 17.8 0.0 0.0011 17.3 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_5 PF00266.14 gi|257387943|ref|YP_003177716.1| - 7.5e-10 38.0 0.0 1.2e-09 37.4 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V GDC-P PF02347.11 gi|257387943|ref|YP_003177716.1| - 6e-09 35.0 0.0 9.2e-08 31.1 0.0 2.0 2 0 0 2 2 2 1 Glycine cleavage system P-protein Beta_elim_lyase PF01212.16 gi|257387943|ref|YP_003177716.1| - 0.00019 20.7 0.0 0.00029 20.1 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|257387943|ref|YP_003177716.1| - 0.012 14.7 0.0 0.018 14.0 0.0 1.3 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.16 gi|257387943|ref|YP_003177716.1| - 0.045 12.6 0.0 0.066 12.1 0.0 1.2 1 0 0 1 1 1 0 Aminotransferase class I and II NikR_C PF08753.6 gi|257387944|ref|YP_003177717.1| - 3.8e-17 61.9 0.2 5.1e-17 61.5 0.2 1.2 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.16 gi|257387944|ref|YP_003177717.1| - 1.3e-07 31.1 0.0 2.4e-07 30.3 0.0 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family PAS_9 PF13426.1 gi|257387945|ref|YP_003177718.1| - 8e-38 128.9 0.3 2.8e-14 53.3 0.0 4.4 4 0 0 4 4 4 3 PAS domain PAS_4 PF08448.5 gi|257387945|ref|YP_003177718.1| - 2.2e-28 98.4 11.4 4e-09 36.4 0.3 4.5 4 0 0 4 4 4 3 PAS fold PAS PF00989.19 gi|257387945|ref|YP_003177718.1| - 8.5e-27 93.1 0.2 5.9e-12 45.3 0.0 4.5 5 0 0 5 5 5 3 PAS fold GAF_3 PF13492.1 gi|257387945|ref|YP_003177718.1| - 2.9e-20 72.6 0.2 6.6e-11 42.4 0.0 3.1 3 0 0 3 3 3 2 GAF domain PAS_8 PF13188.1 gi|257387945|ref|YP_003177718.1| - 8.9e-19 66.6 0.3 2.2e-06 27.3 0.0 4.0 3 0 0 3 3 3 3 PAS domain HATPase_c PF02518.21 gi|257387945|ref|YP_003177718.1| - 1.5e-18 66.5 0.1 7.2e-18 64.3 0.0 2.2 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_2 PF13185.1 gi|257387945|ref|YP_003177718.1| - 2.4e-18 67.0 4.8 5.2e-15 56.2 0.4 3.8 3 2 0 3 3 3 2 GAF domain GAF PF01590.21 gi|257387945|ref|YP_003177718.1| - 1.6e-11 44.5 10.7 2.6e-06 27.6 0.0 5.1 6 2 2 8 8 7 2 GAF domain HATPase_c_2 PF13581.1 gi|257387945|ref|YP_003177718.1| - 1.3e-08 34.6 0.6 6.5e-08 32.4 0.0 2.5 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain Response_reg PF00072.19 gi|257387945|ref|YP_003177718.1| - 5.5e-07 29.5 0.0 1.4e-05 25.1 0.0 2.5 2 0 0 2 2 2 1 Response regulator receiver domain HATPase_c_3 PF13589.1 gi|257387945|ref|YP_003177718.1| - 0.00011 21.8 0.0 0.00023 20.8 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|257387945|ref|YP_003177718.1| - 0.0011 18.9 1.8 0.0011 18.9 1.2 2.8 2 0 0 2 2 1 1 His Kinase A (phospho-acceptor) domain PAS_10 PF13596.1 gi|257387945|ref|YP_003177718.1| - 0.0011 19.1 0.0 7.6 6.8 0.0 4.5 3 2 1 4 4 4 1 PAS domain PAS_3 PF08447.6 gi|257387945|ref|YP_003177718.1| - 0.0012 18.8 0.0 0.11 12.6 0.0 2.8 2 0 0 2 2 2 1 PAS fold PAS_7 PF12860.2 gi|257387945|ref|YP_003177718.1| - 0.0023 17.9 0.1 0.45 10.5 0.0 4.1 4 0 0 4 4 4 1 PAS fold HATPase_c_5 PF14501.1 gi|257387945|ref|YP_003177718.1| - 0.035 13.8 0.0 0.095 12.4 0.0 1.7 2 0 0 2 2 2 0 GHKL domain Response_reg PF00072.19 gi|257387946|ref|YP_003177719.1| - 1.8e-19 69.7 0.0 2e-19 69.6 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain OKR_DC_1_N PF03709.10 gi|257387946|ref|YP_003177719.1| - 0.052 13.6 0.1 0.11 12.6 0.0 1.7 1 1 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain FleQ PF06490.6 gi|257387946|ref|YP_003177719.1| - 0.074 13.2 0.0 0.092 12.8 0.0 1.3 1 0 0 1 1 1 0 Flagellar regulatory protein FleQ zf-H2C2_2 PF13465.1 gi|257387948|ref|YP_003177721.1| - 0.0073 16.5 4.3 0.093 13.0 0.2 2.1 2 0 0 2 2 2 1 Zinc-finger double domain Zn_Tnp_IS1595 PF12760.2 gi|257387948|ref|YP_003177721.1| - 0.011 15.5 2.1 0.013 15.2 1.5 1.1 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zf-DNA_Pol PF08996.5 gi|257387948|ref|YP_003177721.1| - 0.011 15.1 0.1 0.011 15.0 0.1 1.0 1 0 0 1 1 1 0 DNA Polymerase alpha zinc finger PHD PF00628.24 gi|257387948|ref|YP_003177721.1| - 0.065 12.9 1.7 0.89 9.2 0.1 2.1 2 0 0 2 2 2 0 PHD-finger Auto_anti-p27 PF06677.7 gi|257387948|ref|YP_003177721.1| - 0.14 11.9 0.4 5.6 6.8 0.0 2.2 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-C2H2 PF00096.21 gi|257387948|ref|YP_003177721.1| - 0.16 12.3 1.5 16 6.0 0.1 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-LITAF-like PF10601.4 gi|257387948|ref|YP_003177721.1| - 0.38 10.6 0.3 0.38 10.6 0.2 2.0 1 1 0 2 2 2 0 LITAF-like zinc ribbon domain ATP_synt_I PF03899.10 gi|257387949|ref|YP_003177722.1| - 0.19 11.8 3.2 0.53 10.4 2.2 1.7 1 1 0 1 1 1 0 ATP synthase I chain GPDPase_memb PF10110.4 gi|257387949|ref|YP_003177722.1| - 1 8.7 5.8 1.2 8.5 4.0 1.1 1 0 0 1 1 1 0 Membrane domain of glycerophosphoryl diester phosphodiesterase Cob_adeno_trans PF01923.13 gi|257387951|ref|YP_003177724.1| - 1e-58 197.7 0.0 1.1e-58 197.5 0.0 1.0 1 0 0 1 1 1 1 Cobalamin adenosyltransferase HEAT_2 PF13646.1 gi|257387952|ref|YP_003177725.1| - 3.4e-19 68.9 8.3 2.7e-12 46.7 4.0 4.2 3 2 1 4 4 4 2 HEAT repeats HEAT_PBS PF03130.11 gi|257387952|ref|YP_003177725.1| - 1.6e-11 43.4 23.8 0.00023 21.3 0.2 7.1 7 0 0 7 7 7 3 PBS lyase HEAT-like repeat HEAT PF02985.17 gi|257387952|ref|YP_003177725.1| - 3e-05 23.7 1.0 0.15 12.1 0.1 3.6 3 0 0 3 3 3 2 HEAT repeat Arm PF00514.18 gi|257387952|ref|YP_003177725.1| - 6.5e-05 22.5 0.0 0.22 11.3 0.0 3.5 2 1 1 3 3 3 1 Armadillo/beta-catenin-like repeat DUF883 PF05957.8 gi|257387952|ref|YP_003177725.1| - 0.0003 21.1 2.0 0.0003 21.1 1.4 3.1 2 1 1 3 3 3 1 Bacterial protein of unknown function (DUF883) HEAT_EZ PF13513.1 gi|257387952|ref|YP_003177725.1| - 0.0019 18.6 12.3 0.0084 16.5 0.3 3.6 3 0 0 3 3 3 2 HEAT-like repeat CHAD PF05235.9 gi|257387952|ref|YP_003177725.1| - 0.032 13.7 0.5 0.032 13.7 0.3 3.9 2 1 1 3 3 3 0 CHAD domain cwf21 PF08312.7 gi|257387952|ref|YP_003177725.1| - 0.13 12.1 4.9 0.038 13.8 0.7 2.3 2 1 0 2 2 2 0 cwf21 domain CCDC-167 PF15188.1 gi|257387952|ref|YP_003177725.1| - 1.3 9.0 4.3 12 5.8 2.8 2.3 2 0 0 2 2 2 0 Coiled-coil domain-containing protein 167 PhageMin_Tail PF10145.4 gi|257387952|ref|YP_003177725.1| - 1.9 8.0 11.8 0.067 12.8 3.4 2.1 3 0 0 3 3 3 0 Phage-related minor tail protein PLDc_2 PF13091.1 gi|257387953|ref|YP_003177726.1| - 3.5e-32 110.7 0.0 1.5e-18 66.7 0.0 2.2 2 0 0 2 2 2 2 PLD-like domain PLDc PF00614.17 gi|257387953|ref|YP_003177726.1| - 1.2e-07 31.2 1.7 7.9e-06 25.5 0.1 2.6 2 0 0 2 2 2 2 Phospholipase D Active site motif Regulator_TrmB PF11495.3 gi|257387953|ref|YP_003177726.1| - 0.00044 19.3 0.3 0.48 9.3 0.0 2.9 3 0 0 3 3 3 2 Archaeal transcriptional regulator TrmB tRNA_anti-codon PF01336.20 gi|257387954|ref|YP_003177727.1| - 8.3e-14 51.2 0.2 1.7e-13 50.2 0.1 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain DHH PF01368.15 gi|257387954|ref|YP_003177727.1| - 2.1e-09 37.2 0.0 3.4e-09 36.5 0.0 1.3 1 0 0 1 1 1 1 DHH family S1 PF00575.18 gi|257387954|ref|YP_003177727.1| - 5.8e-05 23.1 1.1 5.8e-05 23.1 0.7 2.0 2 0 0 2 2 2 1 S1 RNA binding domain DUF1688 PF07958.6 gi|257387954|ref|YP_003177727.1| - 0.17 10.3 0.1 0.28 9.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1688) Prok-JAB PF14464.1 gi|257387955|ref|YP_003177728.1| - 9.4e-14 50.8 0.0 1.3e-13 50.3 0.0 1.1 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain RadC PF04002.10 gi|257387955|ref|YP_003177728.1| - 0.033 13.8 0.0 0.067 12.8 0.0 1.6 1 1 0 1 1 1 0 RadC-like JAB domain JAB PF01398.16 gi|257387955|ref|YP_003177728.1| - 0.056 13.1 0.0 0.33 10.6 0.0 2.0 1 1 0 1 1 1 0 JAB1/Mov34/MPN/PAD-1 ubiquitin protease CTP_transf_2 PF01467.21 gi|257387956|ref|YP_003177729.1| - 1.2e-14 54.6 0.3 5.5e-14 52.5 0.2 1.8 1 1 0 1 1 1 1 Cytidylyltransferase FAD_syn PF06574.7 gi|257387956|ref|YP_003177729.1| - 0.043 13.4 0.0 0.12 11.9 0.0 1.7 2 0 0 2 2 2 0 FAD synthetase Aminotran_1_2 PF00155.16 gi|257387958|ref|YP_003177731.1| - 3.4e-67 226.9 0.0 3.9e-67 226.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|257387958|ref|YP_003177731.1| - 2.4e-05 23.6 0.0 4.4e-05 22.7 0.0 1.4 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|257387958|ref|YP_003177731.1| - 0.00013 20.4 0.0 0.00021 19.6 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DMRL_synthase PF00885.14 gi|257387959|ref|YP_003177732.1| - 7.8e-31 106.6 1.1 8.5e-31 106.5 0.8 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase PMT_2 PF13231.1 gi|257387960|ref|YP_003177733.1| - 7.1e-16 58.4 8.1 7.1e-16 58.4 5.6 2.4 3 0 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase ATP-grasp PF02222.17 gi|257387961|ref|YP_003177734.1| - 3.7e-50 169.6 0.0 6.7e-50 168.7 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_4 PF13535.1 gi|257387961|ref|YP_003177734.1| - 1.2e-21 77.2 0.1 1.1e-20 74.1 0.0 2.0 2 0 0 2 2 2 1 ATP-grasp domain 2-Hacid_dh_C PF02826.14 gi|257387961|ref|YP_003177734.1| - 5.5e-06 25.6 0.0 9.6e-06 24.8 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ATPgrasp_Ter PF15632.1 gi|257387961|ref|YP_003177734.1| - 6.4e-06 25.1 0.0 4e-05 22.5 0.0 1.9 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon Dala_Dala_lig_C PF07478.8 gi|257387961|ref|YP_003177734.1| - 1.6e-05 24.4 0.0 0.00024 20.5 0.0 2.4 2 1 0 2 2 2 1 D-ala D-ala ligase C-terminus RimK PF08443.6 gi|257387961|ref|YP_003177734.1| - 0.00041 19.8 0.0 0.0021 17.5 0.0 2.0 1 1 0 1 1 1 1 RimK-like ATP-grasp domain CPSase_L_D2 PF02786.12 gi|257387961|ref|YP_003177734.1| - 0.00059 19.1 0.0 0.0013 18.0 0.0 1.6 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_3 PF02655.9 gi|257387961|ref|YP_003177734.1| - 0.00071 19.4 0.0 0.0045 16.8 0.0 2.1 2 0 0 2 2 2 1 ATP-grasp domain XdhC_C PF13478.1 gi|257387961|ref|YP_003177734.1| - 0.0081 16.4 0.0 0.056 13.7 0.0 2.4 2 1 0 2 2 2 1 XdhC Rossmann domain 3HCDH_N PF02737.13 gi|257387961|ref|YP_003177734.1| - 0.074 12.6 0.1 0.18 11.4 0.0 1.7 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|257387961|ref|YP_003177734.1| - 0.075 12.8 0.0 0.19 11.5 0.0 1.6 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase ATP-grasp_5 PF13549.1 gi|257387961|ref|YP_003177734.1| - 0.079 12.1 0.0 0.53 9.4 0.0 2.2 2 0 0 2 2 2 0 ATP-grasp domain AIRC PF00731.15 gi|257387963|ref|YP_003177736.1| - 1e-49 167.6 0.1 1.3e-49 167.3 0.1 1.1 1 0 0 1 1 1 1 AIR carboxylase Oxidored_q4 PF00507.14 gi|257387964|ref|YP_003177737.1| - 1.5e-25 88.9 0.1 1.9e-25 88.5 0.1 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 HIG_1_N PF04588.8 gi|257387964|ref|YP_003177737.1| - 0.041 13.6 3.1 0.48 10.2 0.3 2.4 2 0 0 2 2 2 0 Hypoxia induced protein conserved region Oxidored_q6 PF01058.17 gi|257387965|ref|YP_003177738.1| - 4.4e-22 78.0 0.2 6.4e-22 77.5 0.1 1.2 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Complex1_49kDa PF00346.14 gi|257387966|ref|YP_003177739.1| - 1.7e-65 220.7 0.1 5.2e-43 146.9 0.0 2.4 2 1 1 3 3 3 2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.14 gi|257387966|ref|YP_003177739.1| - 1.7e-29 102.0 0.0 3e-29 101.2 0.0 1.4 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NADHdh PF00146.16 gi|257387967|ref|YP_003177740.1| - 8.2e-78 261.5 9.9 1e-77 261.3 6.9 1.1 1 0 0 1 1 1 1 NADH dehydrogenase Fer4 PF00037.22 gi|257387968|ref|YP_003177741.1| - 1.3e-12 46.7 9.4 1.2e-06 27.8 2.0 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.2 gi|257387968|ref|YP_003177741.1| - 2.1e-11 44.0 10.7 3.3e-11 43.3 7.4 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|257387968|ref|YP_003177741.1| - 2.9e-10 39.8 9.0 4e-10 39.4 6.2 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|257387968|ref|YP_003177741.1| - 2e-09 38.0 5.5 1.5e-05 25.5 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_10 PF13237.1 gi|257387968|ref|YP_003177741.1| - 5.8e-09 35.6 10.6 9.5e-09 34.9 7.3 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|257387968|ref|YP_003177741.1| - 7.4e-09 35.7 11.7 1.6e-08 34.6 8.1 1.6 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|257387968|ref|YP_003177741.1| - 3.7e-08 32.8 12.7 0.00029 20.5 1.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.1 gi|257387968|ref|YP_003177741.1| - 5.5e-08 32.7 10.4 1.5e-07 31.3 7.4 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|257387968|ref|YP_003177741.1| - 1.2e-07 31.1 9.7 0.00025 20.7 0.9 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_4 PF12800.2 gi|257387968|ref|YP_003177741.1| - 4.2e-07 29.7 8.3 0.0016 18.5 1.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|257387968|ref|YP_003177741.1| - 7.8e-07 29.4 5.7 0.005 17.2 0.2 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|257387968|ref|YP_003177741.1| - 1.9e-05 24.9 12.4 0.0075 16.5 8.9 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_3 PF12798.2 gi|257387968|ref|YP_003177741.1| - 0.00036 20.8 15.0 0.0077 16.7 2.7 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_15 PF13459.1 gi|257387968|ref|YP_003177741.1| - 0.0093 16.5 9.7 0.26 11.8 0.5 2.6 2 1 0 2 2 2 2 4Fe-4S single cluster domain Fer4_13 PF13370.1 gi|257387968|ref|YP_003177741.1| - 0.048 14.0 12.7 0.33 11.3 0.8 2.9 3 0 0 3 3 3 0 4Fe-4S single cluster domain Oxidored_q3 PF00499.15 gi|257387969|ref|YP_003177742.1| - 1.9e-14 53.6 4.0 1.9e-14 53.6 2.7 1.4 1 1 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DUF4040 PF13244.1 gi|257387969|ref|YP_003177742.1| - 0.0012 18.7 10.4 0.0012 18.7 7.2 1.5 1 1 1 2 2 2 1 Domain of unknown function (DUF4040) DUF1418 PF07214.7 gi|257387969|ref|YP_003177742.1| - 0.96 9.1 7.4 0.94 9.1 4.7 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1418) Glucos_trans_II PF14264.1 gi|257387969|ref|YP_003177742.1| - 3.6 6.4 10.8 4.2 6.2 7.5 1.0 1 0 0 1 1 1 0 Glucosyl transferase GtrII Oxidored_q2 PF00420.19 gi|257387971|ref|YP_003177744.1| - 1.3e-22 79.1 7.3 1.5e-22 79.0 5.1 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF2157 PF09925.4 gi|257387971|ref|YP_003177744.1| - 0.0098 15.5 4.4 0.014 15.0 3.1 1.3 1 0 0 1 1 1 1 Predicted membrane protein (DUF2157) NKAIN PF05640.9 gi|257387971|ref|YP_003177744.1| - 0.23 10.4 2.2 0.25 10.2 1.5 1.1 1 0 0 1 1 1 0 Na,K-Atpase Interacting protein NicO PF03824.11 gi|257387971|ref|YP_003177744.1| - 0.51 9.6 4.9 0.61 9.3 3.4 1.2 1 0 0 1 1 1 0 High-affinity nickel-transport protein YiaAB PF05360.9 gi|257387971|ref|YP_003177744.1| - 5.1 6.7 8.4 1.8 8.1 0.2 2.4 2 0 0 2 2 2 0 yiaA/B two helix domain Oxidored_q1 PF00361.15 gi|257387972|ref|YP_003177745.1| - 3.1e-72 243.0 10.1 3.1e-72 243.0 7.0 1.9 2 0 0 2 2 2 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|257387972|ref|YP_003177745.1| - 2.1e-11 43.1 0.0 2.6e-10 39.7 0.0 2.7 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q1_C PF01010.14 gi|257387972|ref|YP_003177745.1| - 0.0047 16.4 0.0 0.017 14.6 0.0 1.9 1 1 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I) subunit C-terminus Oxidored_q1 PF00361.15 gi|257387973|ref|YP_003177746.1| - 2.9e-63 213.6 23.2 2.9e-63 213.6 16.1 2.0 3 0 0 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q5_N PF01059.12 gi|257387973|ref|YP_003177746.1| - 0.00053 19.8 0.5 0.00053 19.8 0.3 3.9 3 2 0 4 4 4 1 NADH-ubiquinone oxidoreductase chain 4, amino terminus Oxidored_q1 PF00361.15 gi|257387974|ref|YP_003177747.1| - 1.5e-60 204.7 15.6 1.5e-60 204.7 10.8 2.0 3 0 0 3 3 3 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|257387974|ref|YP_003177747.1| - 0.026 14.0 2.7 0.1 12.1 1.9 2.1 1 0 0 1 1 1 0 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q5_N PF01059.12 gi|257387974|ref|YP_003177747.1| - 0.061 13.2 3.9 0.22 11.4 0.4 2.8 2 0 0 2 2 2 0 NADH-ubiquinone oxidoreductase chain 4, amino terminus PSD5 PF07637.6 gi|257387974|ref|YP_003177747.1| - 0.21 11.6 0.7 0.45 10.5 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1595) Lactamase_B PF00753.22 gi|257387975|ref|YP_003177748.1| - 1.8e-16 60.4 1.0 2.7e-16 59.8 0.7 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|257387975|ref|YP_003177748.1| - 1.3e-06 28.1 0.0 4.7e-06 26.2 0.0 1.8 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Docking PF08990.6 gi|257387976|ref|YP_003177749.1| - 0.0096 15.1 0.0 0.02 14.1 0.0 1.5 1 0 0 1 1 1 1 Erythronolide synthase docking DNA_pol_alpha_N PF12254.3 gi|257387978|ref|YP_003177751.1| - 0.095 12.5 1.3 0.14 11.9 0.5 1.7 1 1 0 1 1 1 0 DNA polymerase alpha subunit p180 N terminal TauE PF01925.14 gi|257387979|ref|YP_003177752.1| - 1.4e-23 83.6 39.3 1.7e-23 83.3 27.2 1.1 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE Ebola_NP PF05505.7 gi|257387979|ref|YP_003177752.1| - 0.19 9.7 0.5 0.29 9.1 0.4 1.2 1 0 0 1 1 1 0 Ebola nucleoprotein DUF3007 PF11460.3 gi|257387979|ref|YP_003177752.1| - 0.92 9.6 5.0 1.1 9.3 0.3 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3007) SBP_bac_6 PF13343.1 gi|257387980|ref|YP_003177753.1| - 6.2e-15 55.1 0.0 8.5e-15 54.7 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|257387980|ref|YP_003177753.1| - 6.3e-09 36.0 4.7 9.1e-09 35.4 3.3 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|257387980|ref|YP_003177753.1| - 0.0066 16.0 0.1 0.012 15.2 0.1 1.4 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.17 gi|257387981|ref|YP_003177754.1| - 1.8e-26 92.7 37.0 2.5e-14 53.2 10.6 2.8 2 1 1 3 3 3 2 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|257387982|ref|YP_003177755.1| - 5.9e-34 117.3 0.0 9.4e-34 116.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.5 gi|257387982|ref|YP_003177755.1| - 3.7e-12 46.0 3.2 4.3e-12 45.8 0.8 2.2 2 0 0 2 2 2 1 TOBE domain AAA_21 PF13304.1 gi|257387982|ref|YP_003177755.1| - 5.6e-09 36.3 0.0 0.0001 22.3 0.0 2.1 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|257387982|ref|YP_003177755.1| - 9.2e-05 21.7 0.1 0.016 14.4 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA PF00004.24 gi|257387982|ref|YP_003177755.1| - 0.00029 21.0 0.1 0.0028 17.8 0.1 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|257387982|ref|YP_003177755.1| - 0.00052 20.0 3.0 0.0019 18.2 2.1 1.9 1 1 0 1 1 1 1 AAA ATPase domain TOBE PF03459.12 gi|257387982|ref|YP_003177755.1| - 0.0037 17.3 5.6 0.0058 16.7 0.2 2.9 3 0 0 3 3 3 1 TOBE domain AAA_22 PF13401.1 gi|257387982|ref|YP_003177755.1| - 0.015 15.4 1.1 0.031 14.4 0.1 1.9 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.1 gi|257387982|ref|YP_003177755.1| - 0.017 14.9 0.4 0.36 10.6 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|257387982|ref|YP_003177755.1| - 0.02 14.3 0.3 0.064 12.6 0.2 2.0 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.1 gi|257387982|ref|YP_003177755.1| - 0.022 13.8 0.0 0.23 10.4 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain Rad17 PF03215.10 gi|257387982|ref|YP_003177755.1| - 0.029 13.0 0.0 0.043 12.4 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein DUF258 PF03193.11 gi|257387982|ref|YP_003177755.1| - 0.034 13.3 0.0 0.059 12.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|257387982|ref|YP_003177755.1| - 0.039 13.4 0.1 0.081 12.4 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_17 PF13207.1 gi|257387982|ref|YP_003177755.1| - 0.054 14.3 0.4 0.14 13.0 0.3 1.9 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.17 gi|257387982|ref|YP_003177755.1| - 0.07 12.5 0.0 0.72 9.2 0.0 2.1 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_23 PF13476.1 gi|257387982|ref|YP_003177755.1| - 0.095 13.0 0.0 0.17 12.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|257387982|ref|YP_003177755.1| - 0.097 12.6 0.6 0.25 11.3 0.1 1.9 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.1 gi|257387982|ref|YP_003177755.1| - 0.1 12.5 0.1 1.1 9.2 0.0 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_5 PF07728.9 gi|257387982|ref|YP_003177755.1| - 0.11 12.2 0.1 0.37 10.5 0.0 1.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) AAA_14 PF13173.1 gi|257387982|ref|YP_003177755.1| - 0.14 12.0 0.0 0.43 10.4 0.0 1.8 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.17 gi|257387982|ref|YP_003177755.1| - 0.2 10.4 0.0 0.32 9.8 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain AIRS_C PF02769.17 gi|257387983|ref|YP_003177756.1| - 3.8e-20 72.4 1.7 5.5e-20 71.9 1.2 1.2 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|257387983|ref|YP_003177756.1| - 6.9e-06 26.2 0.5 4.2e-05 23.6 0.0 2.4 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain Glyco_hydro_68 PF02435.11 gi|257387985|ref|YP_003177758.1| - 7.2e-76 255.6 0.0 2.9e-74 250.3 0.0 2.2 1 1 0 1 1 1 1 Levansucrase/Invertase Glyco_hydro_43 PF04616.9 gi|257387985|ref|YP_003177758.1| - 1.5e-05 24.2 0.0 7.8e-05 21.8 0.0 1.9 1 1 0 1 1 1 1 Glycosyl hydrolases family 43 Glyco_hydro_32N PF00251.15 gi|257387985|ref|YP_003177758.1| - 0.1 11.9 0.0 0.15 11.3 0.0 1.3 1 0 0 1 1 1 0 Glycosyl hydrolases family 32 N-terminal domain Glyco_hydro_32N PF00251.15 gi|257387986|ref|YP_003177759.1| - 1.3e-76 257.9 0.0 2.2e-76 257.1 0.0 1.4 2 0 0 2 2 2 1 Glycosyl hydrolases family 32 N-terminal domain Glyco_hydro_32C PF08244.7 gi|257387986|ref|YP_003177759.1| - 1.1e-12 48.1 0.1 2e-12 47.3 0.1 1.4 1 0 0 1 1 1 1 Glycosyl hydrolases family 32 C terminal TF_Zn_Ribbon PF08271.7 gi|257387987|ref|YP_003177760.1| - 7.8e-06 25.1 1.9 9.9e-06 24.7 1.3 1.1 1 0 0 1 1 1 1 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.2 gi|257387987|ref|YP_003177760.1| - 0.00031 20.4 3.3 0.052 13.3 0.3 2.1 1 1 1 2 2 2 2 Transposase zinc-ribbon domain DZR PF12773.2 gi|257387987|ref|YP_003177760.1| - 0.00094 18.9 0.6 0.0012 18.5 0.4 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|257387987|ref|YP_003177760.1| - 0.0016 17.6 1.0 0.61 9.3 0.1 2.1 2 0 0 2 2 2 2 zinc-ribbon domain zf-ISL3 PF14690.1 gi|257387987|ref|YP_003177760.1| - 0.0025 17.8 1.9 0.42 10.6 1.3 2.1 1 1 0 1 1 1 1 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 OrfB_Zn_ribbon PF07282.6 gi|257387987|ref|YP_003177760.1| - 0.0053 16.3 1.6 0.0065 16.0 0.7 1.5 1 1 1 2 2 2 1 Putative transposase DNA-binding domain DRP PF06044.7 gi|257387987|ref|YP_003177760.1| - 0.0076 15.2 0.2 0.0082 15.1 0.2 1.0 1 0 0 1 1 1 1 Dam-replacing family zf-C4_Topoisom PF01396.14 gi|257387987|ref|YP_003177760.1| - 0.0089 15.5 1.0 2 7.9 0.1 2.1 1 1 1 2 2 2 2 Topoisomerase DNA binding C4 zinc finger zf-dskA_traR PF01258.12 gi|257387987|ref|YP_003177760.1| - 0.012 15.2 2.1 0.038 13.7 0.1 2.0 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger zf-HYPF PF07503.7 gi|257387987|ref|YP_003177760.1| - 0.013 14.9 1.4 0.36 10.2 0.1 2.1 2 0 0 2 2 2 0 HypF finger HypA PF01155.14 gi|257387987|ref|YP_003177760.1| - 0.019 14.6 0.6 0.019 14.6 0.4 1.0 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zinc-ribbons_6 PF07191.7 gi|257387987|ref|YP_003177760.1| - 0.022 14.5 1.1 0.12 12.1 0.7 1.9 1 1 0 1 1 1 0 zinc-ribbons PhnA_Zn_Ribbon PF08274.7 gi|257387987|ref|YP_003177760.1| - 0.024 14.4 2.4 0.089 12.5 1.7 1.8 1 1 0 1 1 1 0 PhnA Zinc-Ribbon Ogr_Delta PF04606.7 gi|257387987|ref|YP_003177760.1| - 0.024 14.2 1.8 1.9 8.2 0.0 2.1 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-TFIIB PF13453.1 gi|257387987|ref|YP_003177760.1| - 0.037 13.2 3.7 0.34 10.1 3.1 1.9 1 1 1 2 2 2 0 Transcription factor zinc-finger zf-Mss51 PF13824.1 gi|257387987|ref|YP_003177760.1| - 0.039 13.7 1.9 0.82 9.5 1.3 2.0 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Cys_rich_KTR PF14205.1 gi|257387987|ref|YP_003177760.1| - 0.049 13.1 2.7 0.072 12.5 1.9 1.4 1 1 0 1 1 1 0 Cysteine-rich KTR ADK_lid PF05191.9 gi|257387987|ref|YP_003177760.1| - 0.072 12.7 0.8 0.12 12.1 0.6 1.5 1 1 0 1 1 1 0 Adenylate kinase, active site lid DUF329 PF03884.9 gi|257387987|ref|YP_003177760.1| - 0.096 12.2 2.3 1 8.9 2.0 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF329) DUF2296 PF10058.4 gi|257387987|ref|YP_003177760.1| - 0.098 12.4 2.3 0.47 10.2 1.6 1.8 1 1 0 1 1 1 0 Predicted integral membrane metal-binding protein (DUF2296) GFA PF04828.9 gi|257387987|ref|YP_003177760.1| - 0.11 12.4 1.6 0.89 9.5 0.1 2.0 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme zf-RING_3 PF14369.1 gi|257387987|ref|YP_003177760.1| - 0.12 12.3 0.2 0.12 12.3 0.1 2.1 1 1 1 2 2 2 0 zinc-finger CpXC PF14353.1 gi|257387987|ref|YP_003177760.1| - 0.13 12.2 2.7 1.1 9.2 0.2 2.0 1 1 1 2 2 2 0 CpXC protein zf-C2H2_4 PF13894.1 gi|257387987|ref|YP_003177760.1| - 0.13 12.6 0.5 6.5 7.3 0.1 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger RNHCP PF12647.2 gi|257387987|ref|YP_003177760.1| - 0.17 11.7 0.9 0.2 11.4 0.6 1.3 1 1 0 1 1 1 0 RNHCP domain DUF2752 PF10825.3 gi|257387987|ref|YP_003177760.1| - 0.18 11.8 1.3 5.1 7.2 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2752) Gin PF10764.4 gi|257387987|ref|YP_003177760.1| - 0.21 11.3 1.3 0.36 10.5 0.9 1.6 1 1 0 1 1 1 0 Inhibitor of sigma-G Gin Elf1 PF05129.8 gi|257387987|ref|YP_003177760.1| - 0.22 11.2 2.3 1.3 8.7 0.1 1.9 1 1 0 1 1 1 0 Transcription elongation factor Elf1 like zf-CHY PF05495.7 gi|257387987|ref|YP_003177760.1| - 0.22 11.7 1.5 0.38 10.9 1.0 1.4 1 1 0 1 1 1 0 CHY zinc finger Cys_rich_CPCC PF14206.1 gi|257387987|ref|YP_003177760.1| - 0.24 10.9 1.8 0.3 10.6 1.2 1.3 1 1 0 1 1 1 0 Cysteine-rich CPCC Auto_anti-p27 PF06677.7 gi|257387987|ref|YP_003177760.1| - 0.27 11.0 2.6 9.7 6.0 0.1 2.1 1 1 1 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Rubredoxin PF00301.15 gi|257387987|ref|YP_003177760.1| - 0.32 10.9 5.2 34 4.4 3.6 2.2 1 1 0 1 1 1 0 Rubredoxin DNA_ligase_ZBD PF03119.11 gi|257387987|ref|YP_003177760.1| - 0.33 10.6 5.1 5.3 6.8 0.1 2.1 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Lar_restr_allev PF14354.1 gi|257387987|ref|YP_003177760.1| - 0.36 11.1 1.8 0.78 10.0 1.3 1.6 1 1 0 1 1 1 0 Restriction alleviation protein Lar UPF0547 PF10571.4 gi|257387987|ref|YP_003177760.1| - 0.37 10.5 4.4 4.1 7.1 0.1 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-LITAF-like PF10601.4 gi|257387987|ref|YP_003177760.1| - 0.42 10.4 2.6 3.3 7.6 0.1 2.1 1 1 1 2 2 2 0 LITAF-like zinc ribbon domain Nudix_N_2 PF14803.1 gi|257387987|ref|YP_003177760.1| - 0.46 10.2 4.1 4.8 6.9 2.9 2.1 1 1 0 1 1 1 0 Nudix N-terminal zf-HIT PF04438.11 gi|257387987|ref|YP_003177760.1| - 0.49 10.0 3.9 6.2 6.5 0.2 2.2 1 1 1 2 2 2 0 HIT zinc finger Zn-ribbon_8 PF09723.5 gi|257387987|ref|YP_003177760.1| - 0.51 10.3 5.3 2.8 7.9 3.3 2.1 1 1 1 2 2 2 0 Zinc ribbon domain zinc_ribbon_2 PF13240.1 gi|257387987|ref|YP_003177760.1| - 1.2 8.7 4.0 11 5.7 2.8 2.1 1 1 0 1 1 1 0 zinc-ribbon domain TFIIS_C PF01096.13 gi|257387987|ref|YP_003177760.1| - 1.3 8.7 4.9 10 5.8 0.4 2.2 1 1 1 2 2 2 0 Transcription factor S-II (TFIIS) zinc_ribbon_5 PF13719.1 gi|257387987|ref|YP_003177760.1| - 1.3 8.6 3.9 20 4.8 2.7 2.1 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|257387987|ref|YP_003177760.1| - 1.6 8.5 4.0 21 4.9 2.8 2.1 1 1 0 1 1 1 0 zinc-ribbon domain DUF1610 PF07754.6 gi|257387987|ref|YP_003177760.1| - 1.6 8.9 6.7 1.9 8.6 0.2 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) zf-RING_4 PF14570.1 gi|257387987|ref|YP_003177760.1| - 4.2 7.0 6.1 2.7 7.6 0.2 2.1 1 1 1 2 2 2 0 RING/Ubox like zinc-binding domain MreB_Mbl PF06723.8 gi|257387988|ref|YP_003177761.1| - 4.6e-06 25.4 0.1 9.3e-06 24.4 0.1 1.6 1 1 0 1 1 1 1 MreB/Mbl protein BcrAD_BadFG PF01869.15 gi|257387988|ref|YP_003177761.1| - 0.017 14.4 0.9 0.055 12.7 0.0 2.2 3 0 0 3 3 3 0 BadF/BadG/BcrA/BcrD ATPase family CheX PF13690.1 gi|257387988|ref|YP_003177761.1| - 0.082 12.7 0.0 0.21 11.4 0.0 1.6 1 0 0 1 1 1 0 Chemotaxis phosphatase CheX DNA_gyraseB PF00204.20 gi|257387988|ref|YP_003177761.1| - 0.13 11.4 0.0 0.23 10.6 0.0 1.3 1 0 0 1 1 1 0 DNA gyrase B Arch_fla_DE PF04659.8 gi|257387989|ref|YP_003177762.1| - 2.9e-30 104.0 0.1 3.7e-30 103.6 0.1 1.1 1 0 0 1 1 1 1 Archaeal flagella protein CbiA PF01656.18 gi|257387990|ref|YP_003177763.1| - 2.7e-28 98.7 0.2 3.7e-28 98.2 0.1 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|257387990|ref|YP_003177763.1| - 3.6e-10 40.0 0.5 9.6e-08 32.1 0.1 2.7 2 1 0 2 2 2 1 AAA domain MipZ PF09140.6 gi|257387990|ref|YP_003177763.1| - 9.6e-10 37.9 1.3 1.2e-06 27.7 0.1 2.3 2 0 0 2 2 2 2 ATPase MipZ ArsA_ATPase PF02374.10 gi|257387990|ref|YP_003177763.1| - 5.3e-06 25.7 3.4 8.8e-05 21.6 2.3 2.2 1 1 0 1 1 1 1 Anion-transporting ATPase Fer4_NifH PF00142.13 gi|257387990|ref|YP_003177763.1| - 8.2e-06 25.2 0.9 0.00019 20.7 0.0 2.8 2 2 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_19 PF13245.1 gi|257387990|ref|YP_003177763.1| - 5.2e-05 22.9 0.4 0.00019 21.1 0.2 2.0 2 0 0 2 2 2 1 Part of AAA domain YhjQ PF06564.7 gi|257387990|ref|YP_003177763.1| - 7.8e-05 22.1 0.0 0.032 13.5 0.0 2.5 2 1 0 2 2 2 2 YhjQ protein AAA_30 PF13604.1 gi|257387990|ref|YP_003177763.1| - 0.0029 17.2 0.7 0.0067 16.0 0.1 2.0 2 1 0 2 2 2 1 AAA domain ATP_bind_1 PF03029.12 gi|257387990|ref|YP_003177763.1| - 0.0096 15.4 0.3 0.22 11.0 0.0 2.4 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein MobB PF03205.9 gi|257387990|ref|YP_003177763.1| - 0.024 14.3 0.0 0.089 12.5 0.0 1.9 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_25 PF13481.1 gi|257387990|ref|YP_003177763.1| - 0.037 13.4 1.8 0.27 10.6 1.2 2.5 1 1 0 1 1 1 0 AAA domain LpxK PF02606.9 gi|257387990|ref|YP_003177763.1| - 0.1 11.5 0.0 0.16 10.8 0.0 1.3 1 0 0 1 1 1 0 Tetraacyldisaccharide-1-P 4'-kinase AAA_22 PF13401.1 gi|257387990|ref|YP_003177763.1| - 0.12 12.4 0.0 0.36 10.9 0.0 1.8 1 1 1 2 2 2 0 AAA domain VirC1 PF07015.6 gi|257387990|ref|YP_003177763.1| - 0.14 11.1 4.3 0.27 10.2 0.1 2.7 1 1 2 3 3 3 0 VirC1 protein AAA_24 PF13479.1 gi|257387990|ref|YP_003177763.1| - 2.5 7.6 5.6 27 4.2 3.9 2.3 1 1 0 1 1 1 0 AAA domain CheW PF01584.14 gi|257387991|ref|YP_003177764.1| - 5.4e-23 80.9 2.2 6.5e-23 80.7 0.3 1.8 2 0 0 2 2 2 1 CheW-like domain MMR_HSR1 PF01926.18 gi|257387992|ref|YP_003177765.1| - 2e-20 72.8 0.0 3.8e-20 71.9 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase TGS PF02824.16 gi|257387992|ref|YP_003177765.1| - 8.3e-18 63.9 0.0 1.6e-17 63.0 0.0 1.5 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.13 gi|257387992|ref|YP_003177765.1| - 7.7e-13 48.0 0.4 3.7e-12 45.8 0.0 2.0 2 0 0 2 2 2 1 Ferrous iron transport protein B Dynamin_N PF00350.18 gi|257387992|ref|YP_003177765.1| - 4.7e-05 23.2 0.2 0.074 12.8 0.1 2.5 1 1 1 2 2 2 2 Dynamin family ArgK PF03308.11 gi|257387992|ref|YP_003177765.1| - 0.00031 19.6 0.9 0.018 13.7 0.0 2.9 2 1 1 3 3 3 1 ArgK protein GTP_EFTU PF00009.22 gi|257387992|ref|YP_003177765.1| - 0.00042 19.7 0.0 0.029 13.7 0.0 2.5 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain Arf PF00025.16 gi|257387992|ref|YP_003177765.1| - 0.00043 19.5 0.0 0.058 12.6 0.0 2.3 2 0 0 2 2 2 1 ADP-ribosylation factor family Miro PF08477.8 gi|257387992|ref|YP_003177765.1| - 0.0015 19.0 0.7 0.0036 17.7 0.0 2.0 3 0 0 3 3 2 1 Miro-like protein cobW PF02492.14 gi|257387992|ref|YP_003177765.1| - 0.0035 16.8 1.0 1.2 8.4 0.0 2.7 3 0 0 3 3 3 2 CobW/HypB/UreG, nucleotide-binding domain ABC_tran PF00005.22 gi|257387992|ref|YP_003177765.1| - 0.0087 16.3 0.0 0.027 14.7 0.0 1.7 2 0 0 2 2 2 1 ABC transporter DUF258 PF03193.11 gi|257387992|ref|YP_003177765.1| - 0.011 14.8 0.0 0.027 13.6 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|257387992|ref|YP_003177765.1| - 0.016 15.9 0.7 0.24 12.2 0.5 2.6 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|257387992|ref|YP_003177765.1| - 0.017 15.0 0.0 0.041 13.8 0.0 1.7 1 0 0 1 1 1 0 AAA domain AIG1 PF04548.11 gi|257387992|ref|YP_003177765.1| - 0.043 12.9 0.0 0.066 12.3 0.0 1.3 1 0 0 1 1 1 0 AIG1 family AAA_18 PF13238.1 gi|257387992|ref|YP_003177765.1| - 0.075 13.3 0.1 0.21 11.8 0.1 2.0 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.1 gi|257387992|ref|YP_003177765.1| - 0.079 12.4 0.1 0.18 11.3 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain MobB PF03205.9 gi|257387992|ref|YP_003177765.1| - 0.1 12.3 0.0 0.2 11.3 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B DUF3611 PF12263.3 gi|257387992|ref|YP_003177765.1| - 0.13 11.5 0.0 0.2 11.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3611) OrfB_Zn_ribbon PF07282.6 gi|257387993|ref|YP_003177766.1| - 3.4e-21 74.6 0.4 7.1e-21 73.6 0.3 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|257387993|ref|YP_003177766.1| - 0.0017 17.8 0.0 0.0025 17.2 0.0 1.2 1 0 0 1 1 1 1 Probable transposase E1_dh PF00676.15 gi|257387993|ref|YP_003177766.1| - 0.034 12.8 0.1 0.063 11.9 0.0 1.3 1 0 0 1 1 1 0 Dehydrogenase E1 component Glyoxalase_2 PF12681.2 gi|257387995|ref|YP_003177768.1| - 1.5e-24 86.6 7.3 5.7e-14 52.6 0.3 2.1 2 0 0 2 2 2 2 Glyoxalase-like domain Glyoxalase PF00903.20 gi|257387995|ref|YP_003177768.1| - 4.4e-22 78.4 4.7 1.1e-13 51.3 0.5 2.3 2 0 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.1 gi|257387995|ref|YP_003177768.1| - 5.4e-13 48.8 6.2 6.1e-05 23.0 0.4 3.8 1 1 3 4 4 4 3 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.1 gi|257387995|ref|YP_003177768.1| - 4.7e-09 36.3 2.3 0.0066 16.3 0.2 4.0 2 2 0 2 2 2 2 Glyoxalase-like domain PemK PF02452.12 gi|257387996|ref|YP_003177769.1| - 9.9e-07 28.9 0.0 1.1e-06 28.8 0.0 1.0 1 0 0 1 1 1 1 PemK-like protein MarR_2 PF12802.2 gi|257387997|ref|YP_003177770.1| - 3.4e-06 26.6 0.0 6e-06 25.8 0.0 1.5 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|257387997|ref|YP_003177770.1| - 4.1e-05 23.1 0.0 0.00011 21.8 0.0 1.6 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|257387997|ref|YP_003177770.1| - 5.6e-05 22.7 0.0 9.3e-05 22.0 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|257387997|ref|YP_003177770.1| - 0.00062 19.1 0.0 0.0033 16.7 0.0 2.3 2 1 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|257387997|ref|YP_003177770.1| - 0.0033 16.9 0.0 0.011 15.3 0.0 1.9 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_23 PF13384.1 gi|257387997|ref|YP_003177770.1| - 0.0042 16.6 0.0 0.0079 15.8 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_20 PF12840.2 gi|257387997|ref|YP_003177770.1| - 0.0055 16.4 0.0 0.013 15.3 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|257387997|ref|YP_003177770.1| - 0.016 14.8 0.0 0.029 14.0 0.0 1.5 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.14 gi|257387997|ref|YP_003177770.1| - 0.017 15.0 0.0 0.027 14.4 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.1 gi|257387997|ref|YP_003177770.1| - 0.054 13.8 0.0 0.12 12.7 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF4423 PF14394.1 gi|257387997|ref|YP_003177770.1| - 0.075 12.5 0.0 0.11 11.9 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) RepL PF05732.6 gi|257387997|ref|YP_003177770.1| - 0.15 11.2 0.0 0.22 10.7 0.0 1.2 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) Exosortase_EpsH PF09721.5 gi|257387999|ref|YP_003177772.1| - 1.4e-46 158.8 17.8 1.9e-46 158.4 12.3 1.1 1 0 0 1 1 1 1 Transmembrane exosortase (Exosortase_EpsH) TP_methylase PF00590.15 gi|257388000|ref|YP_003177773.1| - 1.3e-18 67.5 0.6 1.5e-18 67.2 0.4 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases GHL6 PF14871.1 gi|257388000|ref|YP_003177773.1| - 0.012 15.6 0.0 0.027 14.5 0.0 1.6 1 0 0 1 1 1 0 Hypothetical glycosyl hydrolase 6 Met_10 PF02475.11 gi|257388001|ref|YP_003177774.1| - 7.5e-54 182.3 0.0 9.8e-54 181.9 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Methyltransf_26 PF13659.1 gi|257388001|ref|YP_003177774.1| - 2.2e-10 40.6 3.3 2.8e-10 40.2 0.2 2.3 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|257388001|ref|YP_003177774.1| - 4.7e-10 40.0 2.2 1.2e-09 38.7 0.0 2.5 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|257388001|ref|YP_003177774.1| - 9.3e-09 35.0 0.0 4e-08 33.0 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|257388001|ref|YP_003177774.1| - 1.2e-07 31.4 0.0 1.8e-07 30.8 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase MTS PF05175.9 gi|257388001|ref|YP_003177774.1| - 2.3e-06 27.0 0.0 3.9e-06 26.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain UPF0020 PF01170.13 gi|257388001|ref|YP_003177774.1| - 0.00041 19.9 0.0 0.00069 19.2 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_24 PF13578.1 gi|257388001|ref|YP_003177774.1| - 0.00057 20.6 0.8 0.0025 18.6 0.1 2.3 2 1 1 3 3 3 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|257388001|ref|YP_003177774.1| - 0.00064 20.0 0.0 0.0012 19.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|257388001|ref|YP_003177774.1| - 0.0012 18.2 0.0 0.0022 17.4 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical protein 95 PrmA PF06325.8 gi|257388001|ref|YP_003177774.1| - 0.0021 17.2 0.1 0.0032 16.6 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_23 PF13489.1 gi|257388001|ref|YP_003177774.1| - 0.0026 17.4 0.0 0.0042 16.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|257388001|ref|YP_003177774.1| - 0.0032 17.9 0.0 0.0067 16.8 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain FmrO PF07091.6 gi|257388001|ref|YP_003177774.1| - 0.065 12.2 0.0 0.11 11.4 0.0 1.4 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) DAO PF01266.19 gi|257388002|ref|YP_003177775.1| - 3.9e-09 35.8 4.6 1.2e-06 27.7 0.4 2.2 1 1 0 2 2 2 2 FAD dependent oxidoreductase Trp_halogenase PF04820.9 gi|257388002|ref|YP_003177775.1| - 3.1e-07 29.3 0.4 0.03 12.9 0.0 3.0 2 1 1 3 3 3 3 Tryptophan halogenase Lycopene_cycl PF05834.7 gi|257388002|ref|YP_003177775.1| - 8e-06 25.0 1.9 0.00024 20.1 1.3 2.7 1 1 0 1 1 1 1 Lycopene cyclase protein FAD_binding_2 PF00890.19 gi|257388002|ref|YP_003177775.1| - 1.2e-05 24.3 2.7 0.0014 17.5 0.1 2.2 1 1 1 2 2 2 2 FAD binding domain Thi4 PF01946.12 gi|257388002|ref|YP_003177775.1| - 0.00035 19.7 0.5 0.0016 17.6 0.1 2.1 2 0 0 2 2 2 1 Thi4 family Pyr_redox_2 PF07992.9 gi|257388002|ref|YP_003177775.1| - 0.00037 20.4 0.1 0.00059 19.7 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|257388002|ref|YP_003177775.1| - 0.00051 19.2 1.7 0.0073 15.3 1.2 2.1 1 1 0 1 1 1 1 FAD binding domain Pyr_redox_3 PF13738.1 gi|257388002|ref|YP_003177775.1| - 0.00072 19.6 0.1 0.0017 18.4 0.1 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|257388002|ref|YP_003177775.1| - 0.0025 16.3 0.0 0.0042 15.6 0.0 1.3 1 0 0 1 1 1 1 HI0933-like protein FAD_oxidored PF12831.2 gi|257388002|ref|YP_003177775.1| - 0.0047 16.0 4.2 0.049 12.7 2.8 2.2 1 1 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|257388002|ref|YP_003177775.1| - 0.12 12.3 0.7 0.33 11.0 0.1 2.0 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain Y_phosphatase3C PF13348.1 gi|257388003|ref|YP_003177776.1| - 0.074 13.1 0.2 0.93 9.6 0.1 2.2 2 0 0 2 2 2 0 Tyrosine phosphatase family C-terminal region DUF3153 PF11353.3 gi|257388003|ref|YP_003177776.1| - 0.08 12.3 0.0 0.31 10.4 0.0 1.8 1 1 0 2 2 2 0 Protein of unknown function (DUF3153) Zn-ribbon_8 PF09723.5 gi|257388004|ref|YP_003177777.1| - 0.028 14.3 0.1 0.04 13.8 0.1 1.3 1 0 0 1 1 1 0 Zinc ribbon domain TF_Zn_Ribbon PF08271.7 gi|257388004|ref|YP_003177777.1| - 0.099 11.9 0.1 0.21 10.9 0.0 1.7 2 0 0 2 2 2 0 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.2 gi|257388004|ref|YP_003177777.1| - 0.1 12.4 0.0 0.17 11.7 0.0 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain COX3 PF00510.13 gi|257388005|ref|YP_003177778.1| - 4.1e-35 121.4 21.3 8e-35 120.5 14.8 1.4 1 1 0 1 1 1 1 Cytochrome c oxidase subunit III DUF2321 PF10083.4 gi|257388007|ref|YP_003177780.1| - 0.015 14.7 0.0 0.016 14.7 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2321) zf-C2H2 PF00096.21 gi|257388007|ref|YP_003177780.1| - 0.049 13.9 0.2 0.078 13.3 0.1 1.4 1 0 0 1 1 1 0 Zinc finger, C2H2 type PyrI_C PF02748.10 gi|257388007|ref|YP_003177780.1| - 0.073 12.5 0.0 0.094 12.1 0.0 1.3 1 0 0 1 1 1 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain DUF1469 PF07332.6 gi|257388007|ref|YP_003177780.1| - 0.079 12.6 0.1 0.091 12.4 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) zf-C2HC_2 PF13913.1 gi|257388007|ref|YP_003177780.1| - 0.4 10.4 1.6 0.66 9.7 1.1 1.3 1 0 0 1 1 1 0 zinc-finger of a C2HC-type RNA_pol_L_2 PF13656.1 gi|257388008|ref|YP_003177781.1| - 6.7e-17 60.7 0.0 8e-17 60.4 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.19 gi|257388008|ref|YP_003177781.1| - 9.3e-07 27.8 0.0 1.2e-06 27.5 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain zinc_ribbon_2 PF13240.1 gi|257388009|ref|YP_003177782.1| - 0.00015 21.1 19.6 0.0043 16.5 3.8 2.3 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|257388009|ref|YP_003177782.1| - 0.0004 20.1 12.6 0.0008 19.1 8.7 1.5 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|257388009|ref|YP_003177782.1| - 0.0026 16.9 13.3 0.013 14.6 2.1 2.5 2 0 0 2 2 2 2 zinc-ribbon domain Nudix_N_2 PF14803.1 gi|257388009|ref|YP_003177782.1| - 0.051 13.2 7.5 11 5.8 0.1 4.2 3 1 1 4 4 4 0 Nudix N-terminal GCC2_GCC3 PF07699.8 gi|257388009|ref|YP_003177782.1| - 0.26 10.8 4.7 1.7 8.2 3.2 2.3 1 1 0 1 1 1 0 GCC2 and GCC3 Ribosomal_L37e PF01907.14 gi|257388009|ref|YP_003177782.1| - 0.48 10.2 5.8 5.3 6.9 0.8 2.4 2 0 0 2 2 2 0 Ribosomal protein L37e Gmx_para_CXXCG PF09535.5 gi|257388009|ref|YP_003177782.1| - 0.99 8.3 3.8 9.9 5.0 0.2 2.3 1 1 0 2 2 2 0 Protein of unknown function (Gmx_para_CXXCG) DUF1451 PF07295.6 gi|257388009|ref|YP_003177782.1| - 1.3 8.8 9.2 2.2 8.0 1.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF1451) zf-MYND PF01753.13 gi|257388009|ref|YP_003177782.1| - 1.6 8.6 12.3 5.6 6.9 2.5 2.4 2 0 0 2 2 2 0 MYND finger Ribosomal_L44 PF00935.14 gi|257388009|ref|YP_003177782.1| - 2 8.4 4.0 1.7 8.7 0.1 2.4 2 1 0 2 2 2 0 Ribosomal protein L44 NOB1_Zn_bind PF08772.6 gi|257388009|ref|YP_003177782.1| - 4.3 7.2 9.5 1.1 9.1 0.6 2.5 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like RRN7 PF11781.3 gi|257388009|ref|YP_003177782.1| - 5.5 6.5 8.3 48 3.5 0.5 3.5 3 0 0 3 3 3 0 RNA polymerase I-specific transcription initiation factor Rrn7 DZR PF12773.2 gi|257388010|ref|YP_003177783.1| - 0.0072 16.1 11.2 0.0072 16.1 7.8 1.8 2 1 0 2 2 2 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|257388010|ref|YP_003177783.1| - 0.0097 15.3 19.8 0.039 13.4 2.3 2.9 3 0 0 3 3 3 2 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|257388010|ref|YP_003177783.1| - 0.013 14.6 1.4 0.013 14.6 0.9 3.0 3 0 0 3 3 3 0 zinc-ribbon domain NOB1_Zn_bind PF08772.6 gi|257388010|ref|YP_003177783.1| - 0.39 10.5 5.6 1.9 8.3 0.5 2.4 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like Nudix_N_2 PF14803.1 gi|257388010|ref|YP_003177783.1| - 1.1 9.0 8.9 1.8 8.3 0.1 3.6 3 1 1 4 4 4 0 Nudix N-terminal DUF1451 PF07295.6 gi|257388010|ref|YP_003177783.1| - 2 8.1 9.9 0.91 9.2 0.8 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1451) His_biosynth PF00977.16 gi|257388011|ref|YP_003177784.1| - 4.6e-79 264.8 0.2 5.2e-79 264.7 0.2 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.12 gi|257388011|ref|YP_003177784.1| - 2.4e-10 39.7 0.0 3.7e-06 26.0 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) ThiG PF05690.9 gi|257388011|ref|YP_003177784.1| - 7.4e-08 31.7 0.3 0.00012 21.2 0.1 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG NMO PF03060.10 gi|257388011|ref|YP_003177784.1| - 1.5e-06 27.6 0.3 0.00091 18.4 0.0 2.1 2 0 0 2 2 2 2 Nitronate monooxygenase PcrB PF01884.12 gi|257388011|ref|YP_003177784.1| - 0.00014 21.1 0.5 0.00056 19.2 0.1 2.1 2 1 1 3 3 3 1 PcrB family DHO_dh PF01180.16 gi|257388011|ref|YP_003177784.1| - 0.0002 20.4 0.1 0.016 14.1 0.0 2.1 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase IMPDH PF00478.20 gi|257388011|ref|YP_003177784.1| - 0.0019 17.1 0.3 0.0061 15.5 0.0 1.7 2 0 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain TMP-TENI PF02581.12 gi|257388011|ref|YP_003177784.1| - 0.004 16.2 0.0 0.08 12.0 0.0 2.4 2 1 1 3 3 3 1 Thiamine monophosphate synthase/TENI G3P_antiterm PF04309.7 gi|257388011|ref|YP_003177784.1| - 0.033 13.2 0.1 0.059 12.4 0.0 1.3 1 0 0 1 1 1 0 Glycerol-3-phosphate responsive antiterminator FMN_dh PF01070.13 gi|257388011|ref|YP_003177784.1| - 0.075 11.8 0.3 0.12 11.1 0.2 1.4 1 0 0 1 1 1 0 FMN-dependent dehydrogenase AIRS PF00586.19 gi|257388013|ref|YP_003177786.1| - 6.6e-40 135.2 12.4 6.3e-26 90.4 0.1 3.2 3 0 0 3 3 3 2 AIR synthase related protein, N-terminal domain AIRS_C PF02769.17 gi|257388013|ref|YP_003177786.1| - 1.8e-37 128.7 6.0 1.1e-28 100.1 0.6 2.5 2 0 0 2 2 2 2 AIR synthase related protein, C-terminal domain Cu-oxidase_2 PF07731.9 gi|257388014|ref|YP_003177787.1| - 4.2e-33 113.7 11.5 4e-21 74.9 0.6 3.3 2 1 0 2 2 2 2 Multicopper oxidase Cu-oxidase_3 PF07732.10 gi|257388014|ref|YP_003177787.1| - 2.3e-23 82.1 7.3 4.3e-19 68.3 0.8 2.6 2 1 0 2 2 2 2 Multicopper oxidase Cu-oxidase PF00394.17 gi|257388014|ref|YP_003177787.1| - 1.9e-13 50.6 0.2 7.9e-13 48.6 0.0 1.9 2 0 0 2 2 2 1 Multicopper oxidase Cupredoxin_1 PF13473.1 gi|257388014|ref|YP_003177787.1| - 3.4e-05 23.6 0.1 0.022 14.6 0.0 3.0 2 2 0 2 2 2 2 Cupredoxin-like domain DUF4097 PF13349.1 gi|257388015|ref|YP_003177788.1| - 6.3e-08 32.3 0.0 2.6e-06 27.0 0.0 2.7 2 1 0 2 2 2 1 Domain of unknown function (DUF4097) TAT_signal PF10518.4 gi|257388015|ref|YP_003177788.1| - 0.0063 16.4 5.0 0.0063 16.4 3.4 1.9 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence COX1 PF00115.15 gi|257388017|ref|YP_003177790.1| - 8.3e-155 515.7 57.7 1.3e-154 515.1 40.0 1.3 1 0 0 1 1 1 1 Cytochrome C and Quinol oxidase polypeptide I Cupin_2 PF07883.6 gi|257388019|ref|YP_003177792.1| - 4e-08 32.6 0.4 6.4e-08 31.9 0.3 1.3 1 0 0 1 1 1 1 Cupin domain Cupin_6 PF12852.2 gi|257388019|ref|YP_003177792.1| - 0.00043 19.9 0.3 0.00052 19.6 0.2 1.2 1 0 0 1 1 1 1 Cupin Cupin_1 PF00190.17 gi|257388019|ref|YP_003177792.1| - 0.0022 17.4 0.0 0.0036 16.7 0.0 1.4 1 0 0 1 1 1 1 Cupin Cupin_3 PF05899.7 gi|257388019|ref|YP_003177792.1| - 0.0033 16.7 0.1 0.005 16.1 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF861) AraC_binding PF02311.14 gi|257388019|ref|YP_003177792.1| - 0.0071 16.0 0.0 0.012 15.2 0.0 1.3 1 1 0 1 1 1 1 AraC-like ligand binding domain Pirin_C PF05726.8 gi|257388019|ref|YP_003177792.1| - 0.041 13.9 0.0 0.067 13.2 0.0 1.3 1 0 0 1 1 1 0 Pirin C-terminal cupin domain DUF2249 PF10006.4 gi|257388020|ref|YP_003177793.1| - 2e-25 88.1 0.3 2.2e-25 87.9 0.2 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) TusA PF01206.12 gi|257388020|ref|YP_003177793.1| - 0.0084 15.6 0.0 0.024 14.2 0.0 1.8 1 1 0 1 1 1 1 Sulfurtransferase TusA Cupin_2 PF07883.6 gi|257388021|ref|YP_003177794.1| - 1e-08 34.5 0.0 1.3e-08 34.1 0.0 1.3 1 0 0 1 1 1 1 Cupin domain AraC_binding_2 PF14525.1 gi|257388021|ref|YP_003177794.1| - 0.0017 17.9 0.3 0.002 17.7 0.2 1.2 1 0 0 1 1 1 1 AraC-binding-like domain Cupin_3 PF05899.7 gi|257388021|ref|YP_003177794.1| - 0.097 12.0 0.0 0.14 11.5 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF861) GlutR_dimer PF00745.15 gi|257388022|ref|YP_003177795.1| - 7.4e-15 54.7 1.0 9.1e-15 54.4 0.7 1.0 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain RNA_pol_A_CTD PF03118.10 gi|257388022|ref|YP_003177795.1| - 0.074 12.4 0.1 0.11 11.9 0.1 1.2 1 0 0 1 1 1 0 Bacterial RNA polymerase, alpha chain C terminal domain Prefoldin_2 PF01920.15 gi|257388022|ref|YP_003177795.1| - 0.13 12.0 0.1 0.15 11.8 0.1 1.2 1 0 0 1 1 1 0 Prefoldin subunit DUF2249 PF10006.4 gi|257388023|ref|YP_003177796.1| - 4.7e-15 54.9 0.1 6.1e-15 54.5 0.1 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) TusA PF01206.12 gi|257388023|ref|YP_003177796.1| - 0.004 16.7 0.0 0.0047 16.5 0.0 1.2 1 0 0 1 1 1 1 Sulfurtransferase TusA COX1 PF00115.15 gi|257388024|ref|YP_003177797.1| - 0.00027 19.6 39.7 0.0007 18.3 7.7 4.5 3 1 0 4 4 4 2 Cytochrome C and Quinol oxidase polypeptide I VirB8 PF04335.8 gi|257388024|ref|YP_003177797.1| - 3.9 7.0 7.6 1.6 8.2 0.0 3.4 3 0 0 3 3 3 0 VirB8 protein DUF3353 PF11833.3 gi|257388025|ref|YP_003177798.1| - 0.061 12.7 2.8 0.13 11.7 1.9 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3353) LHC PF00556.15 gi|257388025|ref|YP_003177798.1| - 0.087 12.6 0.3 0.087 12.6 0.2 2.0 2 0 0 2 2 2 0 Antenna complex alpha/beta subunit DUF4199 PF13858.1 gi|257388025|ref|YP_003177798.1| - 2.2 8.1 6.2 0.31 10.9 0.3 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF4199) HTH_20 PF12840.2 gi|257388026|ref|YP_003177799.1| - 2.2e-10 40.1 0.2 3.3e-10 39.6 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|257388026|ref|YP_003177799.1| - 1.4e-06 27.7 0.1 2.6e-06 26.9 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|257388026|ref|YP_003177799.1| - 6e-05 22.6 0.0 9.5e-05 22.0 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_7 PF02796.10 gi|257388026|ref|YP_003177799.1| - 0.00017 21.3 0.0 0.00029 20.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase MarR_2 PF12802.2 gi|257388026|ref|YP_003177799.1| - 0.0011 18.5 0.1 0.0017 18.0 0.1 1.3 1 0 0 1 1 1 1 MarR family Sigma70_r4 PF04545.11 gi|257388026|ref|YP_003177799.1| - 0.0016 17.6 0.0 0.0029 16.9 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_5 PF01022.15 gi|257388026|ref|YP_003177799.1| - 0.0052 16.4 0.1 0.0079 15.8 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TPP_enzyme_M PF00205.17 gi|257388026|ref|YP_003177799.1| - 0.018 14.7 0.0 0.023 14.4 0.0 1.1 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, central domain HTH_24 PF13412.1 gi|257388026|ref|YP_003177799.1| - 0.056 12.8 0.0 0.086 12.2 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Rrf2 PF02082.15 gi|257388026|ref|YP_003177799.1| - 0.12 12.4 0.0 0.69 10.0 0.0 1.9 2 0 0 2 2 2 0 Transcriptional regulator COX1 PF00115.15 gi|257388027|ref|YP_003177800.1| - 7e-46 156.7 45.7 7e-46 156.7 31.7 1.8 2 0 0 2 2 2 1 Cytochrome C and Quinol oxidase polypeptide I TraB PF01963.12 gi|257388028|ref|YP_003177801.1| - 5.3e-09 35.8 0.0 3.3e-05 23.4 0.0 2.1 2 0 0 2 2 2 2 TraB family DUF2171 PF09939.4 gi|257388029|ref|YP_003177802.1| - 0.023 14.6 2.1 0.21 11.6 1.5 2.0 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2171) PRC PF05239.11 gi|257388029|ref|YP_003177802.1| - 0.029 14.2 0.1 0.055 13.3 0.1 1.4 1 0 0 1 1 1 0 PRC-barrel domain PaaB PF06243.6 gi|257388030|ref|YP_003177803.1| - 9.9e-15 54.4 1.6 1.1e-14 54.3 1.1 1.1 1 0 0 1 1 1 1 Phenylacetic acid degradation B Radical_SAM PF04055.16 gi|257388031|ref|YP_003177804.1| - 1.4e-20 74.1 0.0 8.6e-20 71.5 0.0 2.0 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.1 gi|257388031|ref|YP_003177804.1| - 1.7e-10 41.1 0.0 3.6e-10 40.1 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.1 gi|257388031|ref|YP_003177804.1| - 4.6e-09 36.3 0.0 1.8e-08 34.4 0.0 2.0 2 0 0 2 2 2 1 4Fe-4S single cluster domain Methyltransf_25 PF13649.1 gi|257388032|ref|YP_003177805.1| - 1.4e-12 47.8 0.2 4.2e-12 46.3 0.1 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|257388032|ref|YP_003177805.1| - 4.5e-12 46.3 0.0 7.5e-12 45.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|257388032|ref|YP_003177805.1| - 1.4e-10 41.1 0.0 1.5e-09 37.8 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|257388032|ref|YP_003177805.1| - 2.3e-09 37.7 0.1 4.4e-09 36.9 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|257388032|ref|YP_003177805.1| - 4.5e-09 36.6 0.1 8.6e-09 35.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|257388032|ref|YP_003177805.1| - 7.4e-08 31.9 0.0 1.5e-07 30.9 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_31 PF13847.1 gi|257388032|ref|YP_003177805.1| - 1.1e-07 31.5 0.0 1.5e-07 31.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|257388032|ref|YP_003177805.1| - 1.4e-06 28.3 0.2 2.8e-06 27.3 0.1 1.8 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|257388032|ref|YP_003177805.1| - 6.9e-05 22.0 0.0 0.0028 16.8 0.0 2.1 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family CMAS PF02353.15 gi|257388032|ref|YP_003177805.1| - 0.00017 20.7 0.0 0.00025 20.2 0.0 1.3 1 1 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_9 PF08003.6 gi|257388032|ref|YP_003177805.1| - 0.0029 16.3 0.0 0.004 15.8 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) PCMT PF01135.14 gi|257388032|ref|YP_003177805.1| - 0.01 15.4 0.0 0.016 14.7 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MetW PF07021.7 gi|257388032|ref|YP_003177805.1| - 0.011 15.0 0.0 0.017 14.4 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW RrnaAD PF00398.15 gi|257388032|ref|YP_003177805.1| - 0.012 14.6 0.0 0.022 13.7 0.0 1.4 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase FmrO PF07091.6 gi|257388032|ref|YP_003177805.1| - 0.026 13.5 0.1 0.04 12.9 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA methyltransferase (FmrO) PrmA PF06325.8 gi|257388032|ref|YP_003177805.1| - 0.05 12.7 0.0 0.088 11.9 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) NodS PF05401.6 gi|257388032|ref|YP_003177805.1| - 0.12 11.7 0.0 0.16 11.3 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) PHP_C PF13263.1 gi|257388033|ref|YP_003177806.1| - 7.7e-24 82.9 0.4 4.4e-23 80.5 0.1 2.1 2 0 0 2 2 2 1 PHP-associated PHP PF02811.14 gi|257388033|ref|YP_003177806.1| - 1.4e-16 60.8 0.0 5.4e-16 58.8 0.0 1.9 1 1 0 1 1 1 1 PHP domain Asn_synthase PF00733.16 gi|257388034|ref|YP_003177807.1| - 5.8e-38 130.8 0.9 9.4e-38 130.1 0.6 1.3 1 0 0 1 1 1 1 Asparagine synthase VMA21 PF09446.5 gi|257388035|ref|YP_003177808.1| - 1.3 8.9 4.9 1.6 8.7 0.4 2.3 2 1 0 2 2 2 0 VMA21-like domain zf-C2H2_3 PF13878.1 gi|257388036|ref|YP_003177809.1| - 0.0025 17.3 0.4 0.037 13.5 0.0 2.5 2 0 0 2 2 2 1 zinc-finger of acetyl-transferase ESCO TF_Zn_Ribbon PF08271.7 gi|257388036|ref|YP_003177809.1| - 0.0027 16.9 0.2 0.7 9.2 0.0 2.5 2 0 0 2 2 2 1 TFIIB zinc-binding zf-TFIIB PF13453.1 gi|257388036|ref|YP_003177809.1| - 0.0036 16.4 1.4 0.014 14.6 1.0 1.9 1 1 0 1 1 1 1 Transcription factor zinc-finger zf-ribbon_3 PF13248.1 gi|257388036|ref|YP_003177809.1| - 0.0064 15.6 0.6 2.8 7.2 0.1 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zf-IS66 PF13005.2 gi|257388036|ref|YP_003177809.1| - 0.0076 16.1 1.5 0.59 10.1 0.2 2.3 2 0 0 2 2 2 1 zinc-finger binding domain of transposase IS66 Zn_Tnp_IS1595 PF12760.2 gi|257388036|ref|YP_003177809.1| - 0.01 15.6 0.5 2.8 7.8 0.0 2.3 1 1 1 2 2 2 0 Transposase zinc-ribbon domain DUF35_N PF12172.3 gi|257388036|ref|YP_003177809.1| - 0.019 14.8 2.7 0.79 9.7 0.3 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-NADH-PPase PF09297.6 gi|257388036|ref|YP_003177809.1| - 0.037 13.5 2.5 4.6 6.8 0.2 2.5 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain UPF0547 PF10571.4 gi|257388036|ref|YP_003177809.1| - 0.037 13.7 2.8 1.8 8.3 0.0 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-tcix PF14952.1 gi|257388036|ref|YP_003177809.1| - 0.037 13.3 1.0 5.3 6.4 0.1 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding A2L_zn_ribbon PF08792.5 gi|257388036|ref|YP_003177809.1| - 0.043 13.2 0.6 6.5 6.3 0.0 2.4 2 0 0 2 2 2 0 A2L zinc ribbon domain DZR PF12773.2 gi|257388036|ref|YP_003177809.1| - 0.06 13.1 1.3 0.68 9.7 0.9 2.1 1 1 0 1 1 1 0 Double zinc ribbon DUF1936 PF09151.5 gi|257388036|ref|YP_003177809.1| - 0.074 12.5 0.4 12 5.4 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1936) Rubredoxin PF00301.15 gi|257388036|ref|YP_003177809.1| - 0.087 12.7 0.4 5.6 6.9 0.0 2.6 2 0 0 2 2 2 0 Rubredoxin zinc_ribbon_2 PF13240.1 gi|257388036|ref|YP_003177809.1| - 0.095 12.2 2.7 2.9 7.5 0.0 2.7 3 0 0 3 3 3 0 zinc-ribbon domain YhfH PF14149.1 gi|257388036|ref|YP_003177809.1| - 0.13 12.1 0.9 13 5.6 0.1 2.4 2 0 0 2 2 2 0 YhfH-like protein Methyltransf_13 PF08421.6 gi|257388036|ref|YP_003177809.1| - 0.13 11.8 0.2 0.67 9.4 0.0 2.0 2 0 0 2 2 2 0 Putative zinc binding domain Auto_anti-p27 PF06677.7 gi|257388036|ref|YP_003177809.1| - 0.14 11.9 0.6 9.9 6.0 0.0 2.2 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Zn_Tnp_IS91 PF14319.1 gi|257388036|ref|YP_003177809.1| - 0.14 11.6 0.1 3.5 7.1 0.0 2.1 2 0 0 2 2 2 0 Transposase zinc-binding domain zf-Mss51 PF13824.1 gi|257388036|ref|YP_003177809.1| - 0.17 11.7 2.2 10 6.0 0.1 2.5 2 1 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-C4_Topoisom PF01396.14 gi|257388036|ref|YP_003177809.1| - 0.43 10.1 2.7 15 5.1 0.2 2.2 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger NUDIX PF00293.23 gi|257388037|ref|YP_003177810.1| - 2.9e-12 46.3 0.2 4.1e-12 45.9 0.2 1.2 1 0 0 1 1 1 1 NUDIX domain TFIIB PF00382.14 gi|257388038|ref|YP_003177811.1| - 6.1e-44 147.7 0.1 3.1e-21 74.9 0.0 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|257388038|ref|YP_003177811.1| - 1.6e-18 65.7 4.2 4.8e-18 64.1 3.0 1.8 2 0 0 2 2 2 1 TFIIB zinc-binding A2L_zn_ribbon PF08792.5 gi|257388038|ref|YP_003177811.1| - 0.0015 17.8 0.6 0.0026 17.1 0.4 1.4 1 0 0 1 1 1 1 A2L zinc ribbon domain Sigma70_r4 PF04545.11 gi|257388038|ref|YP_003177811.1| - 0.012 14.9 0.1 0.012 14.9 0.0 3.6 5 0 0 5 5 5 0 Sigma-70, region 4 DZR PF12773.2 gi|257388038|ref|YP_003177811.1| - 0.021 14.6 0.8 0.039 13.7 0.5 1.4 1 0 0 1 1 1 0 Double zinc ribbon RRN7 PF11781.3 gi|257388038|ref|YP_003177811.1| - 0.027 13.9 1.9 0.049 13.1 1.3 1.4 1 0 0 1 1 1 0 RNA polymerase I-specific transcription initiation factor Rrn7 Rubredoxin PF00301.15 gi|257388038|ref|YP_003177811.1| - 0.029 14.2 0.6 2.9 7.8 0.1 2.5 2 0 0 2 2 2 0 Rubredoxin DUF1272 PF06906.6 gi|257388038|ref|YP_003177811.1| - 0.046 13.5 0.6 0.11 12.3 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1272) HTH_24 PF13412.1 gi|257388038|ref|YP_003177811.1| - 0.06 12.7 0.1 0.11 11.8 0.1 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding OrfB_Zn_ribbon PF07282.6 gi|257388038|ref|YP_003177811.1| - 0.079 12.6 1.1 0.2 11.3 0.8 1.6 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-C4_Topoisom PF01396.14 gi|257388038|ref|YP_003177811.1| - 0.12 11.8 0.1 0.12 11.8 0.1 1.7 1 1 1 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Zn-ribbon_8 PF09723.5 gi|257388038|ref|YP_003177811.1| - 0.17 11.8 5.6 0.41 10.6 0.6 2.4 1 1 1 2 2 2 0 Zinc ribbon domain TrmB PF01978.14 gi|257388038|ref|YP_003177811.1| - 0.2 11.3 0.9 0.56 9.9 0.1 2.1 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB zf-ribbon_3 PF13248.1 gi|257388038|ref|YP_003177811.1| - 0.26 10.5 4.3 0.57 9.4 3.0 1.6 1 1 0 1 1 1 0 zinc-ribbon domain zf-IS66 PF13005.2 gi|257388038|ref|YP_003177811.1| - 9.1 6.3 9.1 18 5.3 3.9 3.0 2 1 1 3 3 3 0 zinc-finger binding domain of transposase IS66 Glu-tRNAGln PF02686.10 gi|257388039|ref|YP_003177812.1| - 1.5e-18 66.3 1.1 2.4e-18 65.7 0.8 1.3 1 0 0 1 1 1 1 Glu-tRNAGln amidotransferase C subunit Amidase PF01425.16 gi|257388040|ref|YP_003177813.1| - 6.4e-140 466.8 2.4 7.5e-140 466.6 1.6 1.0 1 0 0 1 1 1 1 Amidase Peptidase_M48 PF01435.13 gi|257388041|ref|YP_003177814.1| - 6.4e-25 88.0 0.0 1.8e-24 86.5 0.0 1.6 1 1 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.6 gi|257388041|ref|YP_003177814.1| - 1.3e-05 24.3 0.0 2.3e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 BlaR1 peptidase M56 DUF45 PF01863.12 gi|257388041|ref|YP_003177814.1| - 0.0059 16.4 0.0 0.011 15.5 0.0 1.5 1 1 0 1 1 1 1 Protein of unknown function DUF45 Peptidase_MA_2 PF13485.1 gi|257388041|ref|YP_003177814.1| - 0.023 14.7 0.0 0.07 13.1 0.0 1.8 1 0 0 1 1 1 0 Peptidase MA superfamily SprT-like PF10263.4 gi|257388041|ref|YP_003177814.1| - 0.1 12.2 0.0 0.17 11.5 0.0 1.3 1 0 0 1 1 1 0 SprT-like family PIG-L PF02585.12 gi|257388042|ref|YP_003177815.1| - 9.5e-27 94.0 0.4 1.9e-26 93.0 0.2 1.5 1 0 0 1 1 1 1 GlcNAc-PI de-N-acetylase Glycos_transf_1 PF00534.15 gi|257388043|ref|YP_003177816.1| - 4.6e-27 94.5 0.0 1.8e-26 92.5 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|257388043|ref|YP_003177816.1| - 1e-16 61.5 5.3 6.7e-16 58.8 1.5 2.2 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|257388043|ref|YP_003177816.1| - 2.1e-16 60.1 0.1 3e-16 59.6 0.1 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.1 gi|257388043|ref|YP_003177816.1| - 4.2e-16 59.3 0.6 6.7e-15 55.4 0.1 2.5 2 1 1 3 3 3 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|257388043|ref|YP_003177816.1| - 1.4e-05 25.2 0.0 6.2e-05 23.2 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|257388043|ref|YP_003177816.1| - 0.01 15.7 0.0 0.02 14.7 0.0 1.6 1 1 0 1 1 1 1 Glycosyl transferase 4-like Glycos_transf_1 PF00534.15 gi|257388044|ref|YP_003177817.1| - 1.9e-21 76.2 0.0 2e-20 72.9 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|257388044|ref|YP_003177817.1| - 4.3e-18 65.7 0.0 1.2e-16 61.0 0.0 2.5 2 1 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|257388044|ref|YP_003177817.1| - 9.6e-15 54.6 0.0 1.9e-14 53.6 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|257388044|ref|YP_003177817.1| - 3.2e-11 43.6 2.0 2.1e-09 37.7 0.2 2.4 1 1 1 2 2 2 2 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|257388044|ref|YP_003177817.1| - 3.7e-09 36.5 0.0 5.7e-09 35.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Rpr2 PF04032.11 gi|257388045|ref|YP_003177818.1| - 3.1e-17 62.1 0.0 3.6e-17 61.9 0.0 1.0 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain DUF164 PF02591.10 gi|257388045|ref|YP_003177818.1| - 0.063 13.1 0.6 0.1 12.4 0.5 1.4 1 0 0 1 1 1 0 Putative zinc ribbon domain zf-DNL PF05180.7 gi|257388045|ref|YP_003177818.1| - 0.085 12.5 1.0 0.14 11.9 0.4 1.5 2 0 0 2 2 2 0 DNL zinc finger PGBA_C PF15437.1 gi|257388045|ref|YP_003177818.1| - 0.69 10.0 4.5 0.88 9.7 3.2 1.2 1 0 0 1 1 1 0 Plasminogen-binding protein pgbA C-terminal CRS1_YhbY PF01985.16 gi|257388046|ref|YP_003177819.1| - 2.6e-16 59.3 0.0 2.7e-16 59.3 0.0 1.0 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain MS_channel PF00924.13 gi|257388047|ref|YP_003177820.1| - 1.3e-54 184.6 0.1 1.9e-54 184.1 0.1 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel SRR PF07709.6 gi|257388048|ref|YP_003177821.1| - 0.1 12.8 0.9 9.8 6.8 0.0 3.1 2 1 1 3 3 3 0 Seven Residue Repeat DUF3948 PF13134.1 gi|257388049|ref|YP_003177822.1| - 0.1 12.0 0.1 0.1 12.0 0.1 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3948) MARVEL PF01284.18 gi|257388049|ref|YP_003177822.1| - 0.25 11.1 12.8 0.37 10.6 8.9 1.3 1 1 0 1 1 1 0 Membrane-associating domain DUF1435 PF07256.7 gi|257388049|ref|YP_003177822.1| - 3.9 7.5 6.6 0.29 11.1 0.5 2.1 3 0 0 3 3 3 0 Protein of unknown function (DUF1435) Laminin_I PF06008.9 gi|257388050|ref|YP_003177823.1| - 0.0022 17.3 1.8 0.0027 17.0 1.2 1.0 1 0 0 1 1 1 1 Laminin Domain I DUF812 PF05667.6 gi|257388050|ref|YP_003177823.1| - 0.005 15.4 0.5 0.0057 15.2 0.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF812) DegS PF05384.6 gi|257388050|ref|YP_003177823.1| - 0.0065 15.6 1.0 0.0072 15.5 0.7 1.1 1 0 0 1 1 1 1 Sensor protein DegS RmuC PF02646.11 gi|257388050|ref|YP_003177823.1| - 0.0076 15.1 0.4 0.0092 14.8 0.3 1.0 1 0 0 1 1 1 1 RmuC family GP41 PF00517.12 gi|257388050|ref|YP_003177823.1| - 0.012 15.2 0.3 0.015 14.8 0.2 1.1 1 0 0 1 1 1 0 Retroviral envelope protein Tropomyosin PF00261.15 gi|257388050|ref|YP_003177823.1| - 0.013 14.5 1.3 0.017 14.2 0.9 1.1 1 0 0 1 1 1 0 Tropomyosin BAR PF03114.13 gi|257388050|ref|YP_003177823.1| - 0.014 14.9 0.6 0.016 14.6 0.4 1.1 1 0 0 1 1 1 0 BAR domain GAT PF03127.9 gi|257388050|ref|YP_003177823.1| - 0.014 15.3 0.3 0.02 14.8 0.2 1.2 1 0 0 1 1 1 0 GAT domain Med9 PF07544.8 gi|257388050|ref|YP_003177823.1| - 0.017 14.8 1.6 0.031 14.0 1.1 1.5 1 1 0 1 1 1 0 RNA polymerase II transcription mediator complex subunit 9 DUF972 PF06156.8 gi|257388050|ref|YP_003177823.1| - 0.018 15.3 0.6 0.021 15.1 0.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF972) MCPsignal PF00015.16 gi|257388050|ref|YP_003177823.1| - 0.026 14.0 0.3 0.03 13.8 0.2 1.1 1 0 0 1 1 1 0 Methyl-accepting chemotaxis protein (MCP) signalling domain Apolipoprotein PF01442.13 gi|257388050|ref|YP_003177823.1| - 0.039 13.4 1.7 0.051 13.0 1.2 1.1 1 0 0 1 1 1 0 Apolipoprotein A1/A4/E domain TBPIP PF07106.8 gi|257388050|ref|YP_003177823.1| - 0.04 13.4 0.6 0.047 13.2 0.4 1.1 1 0 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Bacillus_HBL PF05791.6 gi|257388050|ref|YP_003177823.1| - 0.047 13.0 0.3 0.059 12.7 0.2 1.1 1 0 0 1 1 1 0 Bacillus haemolytic enterotoxin (HBL) TMF_DNA_bd PF12329.3 gi|257388050|ref|YP_003177823.1| - 0.052 13.3 1.9 0.075 12.8 1.3 1.2 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding EzrA PF06160.7 gi|257388050|ref|YP_003177823.1| - 0.053 11.7 0.9 0.06 11.5 0.6 1.0 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA DUF3450 PF11932.3 gi|257388050|ref|YP_003177823.1| - 0.053 12.7 1.2 0.066 12.4 0.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) PspA_IM30 PF04012.7 gi|257388050|ref|YP_003177823.1| - 0.056 12.8 1.8 0.062 12.6 1.3 1.2 1 0 0 1 1 1 0 PspA/IM30 family PspB PF06667.7 gi|257388050|ref|YP_003177823.1| - 0.068 13.1 1.6 2.2 8.2 0.1 2.2 1 1 1 2 2 2 0 Phage shock protein B Atg14 PF10186.4 gi|257388050|ref|YP_003177823.1| - 0.068 12.1 0.5 0.083 11.8 0.3 1.1 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 DUF2863 PF11062.3 gi|257388050|ref|YP_003177823.1| - 0.069 11.2 0.1 0.08 11.0 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2863) Packaging_FI PF14000.1 gi|257388050|ref|YP_003177823.1| - 0.069 13.3 3.5 0.1 12.8 2.4 1.4 1 1 0 1 1 1 0 DNA packaging protein FI Spc24 PF08286.6 gi|257388050|ref|YP_003177823.1| - 0.069 12.8 1.2 0.089 12.4 0.8 1.2 1 0 0 1 1 1 0 Spc24 subunit of Ndc80 Herpes_UL6 PF01763.11 gi|257388050|ref|YP_003177823.1| - 0.07 11.2 0.1 0.071 11.2 0.1 1.0 1 0 0 1 1 1 0 Herpesvirus UL6 like Mod_r PF07200.8 gi|257388050|ref|YP_003177823.1| - 0.071 13.0 0.7 0.087 12.7 0.5 1.1 1 0 0 1 1 1 0 Modifier of rudimentary (Mod(r)) protein Tropomyosin_1 PF12718.2 gi|257388050|ref|YP_003177823.1| - 0.083 12.7 2.3 0.12 12.2 1.6 1.2 1 0 0 1 1 1 0 Tropomyosin like V-SNARE PF05008.10 gi|257388050|ref|YP_003177823.1| - 0.086 13.0 1.2 0.13 12.4 0.8 1.3 1 0 0 1 1 1 0 Vesicle transport v-SNARE protein N-terminus DUF2200 PF09966.4 gi|257388050|ref|YP_003177823.1| - 0.087 12.7 0.1 0.12 12.2 0.1 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2200) Laminin_II PF06009.7 gi|257388050|ref|YP_003177823.1| - 0.098 12.4 0.5 0.15 11.8 0.4 1.4 1 1 0 1 1 1 0 Laminin Domain II WXG100 PF06013.7 gi|257388050|ref|YP_003177823.1| - 0.11 12.4 1.4 1.1 9.3 0.7 2.3 1 1 0 1 1 1 0 Proteins of 100 residues with WXG Prominin PF05478.6 gi|257388050|ref|YP_003177823.1| - 0.13 9.8 0.1 0.14 9.6 0.1 1.0 1 0 0 1 1 1 0 Prominin HSBP1 PF06825.7 gi|257388050|ref|YP_003177823.1| - 0.13 11.8 0.4 0.82 9.2 0.3 2.0 1 1 0 1 1 1 0 Heat shock factor binding protein 1 Mnd1 PF03962.10 gi|257388050|ref|YP_003177823.1| - 0.14 11.8 0.6 0.16 11.6 0.4 1.1 1 0 0 1 1 1 0 Mnd1 family IncA PF04156.9 gi|257388050|ref|YP_003177823.1| - 0.14 11.7 1.9 0.18 11.3 1.3 1.1 1 0 0 1 1 1 0 IncA protein LUC7 PF03194.10 gi|257388050|ref|YP_003177823.1| - 0.15 11.5 2.0 0.18 11.3 1.4 1.0 1 0 0 1 1 1 0 LUC7 N_terminus AAA_13 PF13166.1 gi|257388050|ref|YP_003177823.1| - 0.18 10.2 0.5 0.22 9.9 0.4 1.0 1 0 0 1 1 1 0 AAA domain DUF1664 PF07889.7 gi|257388050|ref|YP_003177823.1| - 0.19 11.5 1.4 0.24 11.1 1.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) Spectrin PF00435.16 gi|257388050|ref|YP_003177823.1| - 0.24 11.7 2.3 0.64 10.3 1.6 1.7 1 1 0 1 1 1 0 Spectrin repeat Syntaxin PF00804.20 gi|257388050|ref|YP_003177823.1| - 0.29 11.3 4.0 3.7 7.7 0.4 2.1 1 1 1 2 2 2 0 Syntaxin DUF2630 PF10944.3 gi|257388050|ref|YP_003177823.1| - 0.94 9.6 4.3 0.68 10.0 1.3 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2630) CoA_binding_2 PF13380.1 gi|257388051|ref|YP_003177824.1| - 1.1e-38 131.9 0.1 1.3e-38 131.7 0.1 1.0 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.14 gi|257388051|ref|YP_003177824.1| - 1.4e-05 25.5 0.0 1.9e-05 25.0 0.0 1.2 1 0 0 1 1 1 1 CoA binding domain TusA PF01206.12 gi|257388051|ref|YP_003177824.1| - 0.0052 16.3 0.0 0.012 15.2 0.0 1.6 1 0 0 1 1 1 1 Sulfurtransferase TusA LytR_C PF13399.1 gi|257388051|ref|YP_003177824.1| - 0.028 14.7 0.1 10 6.6 0.0 2.1 1 1 1 2 2 2 0 LytR cell envelope-related transcriptional attenuator KaiC PF06745.8 gi|257388052|ref|YP_003177825.1| - 1.3e-07 31.0 0.1 2.6e-07 30.0 0.1 1.4 1 1 0 1 1 1 1 KaiC AAA_19 PF13245.1 gi|257388052|ref|YP_003177825.1| - 0.012 15.2 0.2 0.027 14.2 0.1 1.6 1 0 0 1 1 1 0 Part of AAA domain Fic_N PF13784.1 gi|257388053|ref|YP_003177826.1| - 8.5e-20 70.4 0.0 3.2e-19 68.5 0.0 2.0 2 0 0 2 2 2 1 Fic/DOC family N-terminal Fic PF02661.13 gi|257388053|ref|YP_003177826.1| - 1.7e-19 70.2 0.0 5.1e-19 68.7 0.0 1.8 1 0 0 1 1 1 1 Fic/DOC family MarR_2 PF12802.2 gi|257388053|ref|YP_003177826.1| - 3e-05 23.5 0.2 0.00012 21.6 0.0 2.1 2 0 0 2 2 2 1 MarR family HTH_13 PF11972.3 gi|257388053|ref|YP_003177826.1| - 0.00018 21.2 0.0 0.0004 20.1 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain HTH_24 PF13412.1 gi|257388053|ref|YP_003177826.1| - 0.0023 17.2 0.0 0.0044 16.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding DUF1403 PF07183.6 gi|257388053|ref|YP_003177826.1| - 0.0041 16.5 0.2 0.0078 15.6 0.0 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF1403) HTH_1 PF00126.22 gi|257388053|ref|YP_003177826.1| - 0.024 14.3 0.0 0.081 12.6 0.0 1.9 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family TrmB PF01978.14 gi|257388053|ref|YP_003177826.1| - 0.093 12.4 0.0 0.21 11.3 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HEAT_2 PF13646.1 gi|257388054|ref|YP_003177827.1| - 8.7e-19 67.5 12.9 4.7e-07 29.9 0.5 3.6 1 1 2 3 3 3 3 HEAT repeats HEAT PF02985.17 gi|257388054|ref|YP_003177827.1| - 4.6e-10 38.7 5.1 0.05 13.6 0.0 5.9 6 0 0 6 6 6 3 HEAT repeat HEAT_EZ PF13513.1 gi|257388054|ref|YP_003177827.1| - 8.6e-08 32.4 20.5 0.02 15.3 0.4 5.5 2 1 4 6 6 6 4 HEAT-like repeat Adaptin_N PF01602.15 gi|257388054|ref|YP_003177827.1| - 0.00011 20.7 0.0 10 4.2 0.0 2.7 1 1 1 2 2 2 2 Adaptin N terminal region zinc_ribbon_2 PF13240.1 gi|257388054|ref|YP_003177827.1| - 0.00014 21.2 5.1 0.00024 20.4 3.6 1.4 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|257388054|ref|YP_003177827.1| - 0.00025 20.8 1.1 0.00043 20.0 0.8 1.3 1 0 0 1 1 1 1 Double zinc ribbon Cnd1 PF12717.2 gi|257388054|ref|YP_003177827.1| - 0.00025 20.9 0.0 0.01 15.7 0.0 2.5 2 0 0 2 2 2 1 non-SMC mitotic condensation complex subunit 1 zf-ribbon_3 PF13248.1 gi|257388054|ref|YP_003177827.1| - 0.0075 15.4 5.9 0.017 14.3 4.1 1.6 1 0 0 1 1 1 1 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|257388054|ref|YP_003177827.1| - 1.2 9.1 6.0 4.8 7.2 0.2 2.4 1 1 1 2 2 2 0 Zinc ribbon domain UPF0547 PF10571.4 gi|257388054|ref|YP_003177827.1| - 1.7 8.3 0.0 1.7 8.3 0.0 2.6 3 0 0 3 3 3 0 Uncharacterised protein family UPF0547 DAO PF01266.19 gi|257388055|ref|YP_003177828.1| - 2.6e-08 33.1 3.1 0.00041 19.3 0.1 2.3 2 1 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|257388055|ref|YP_003177828.1| - 5.4e-06 26.4 0.0 8.5e-06 25.7 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|257388055|ref|YP_003177828.1| - 1.5e-05 23.6 0.0 0.014 13.8 0.0 2.1 2 0 0 2 2 2 2 HI0933-like protein FAD_oxidored PF12831.2 gi|257388055|ref|YP_003177828.1| - 5.1e-05 22.5 2.0 0.006 15.7 0.2 2.0 1 1 1 2 2 2 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|257388055|ref|YP_003177828.1| - 0.0005 20.0 0.0 0.0011 18.9 0.0 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.14 gi|257388055|ref|YP_003177828.1| - 0.001 18.1 0.2 0.0023 17.0 0.0 1.7 2 0 0 2 2 2 1 FAD binding domain FAD_binding_2 PF00890.19 gi|257388055|ref|YP_003177828.1| - 0.0011 17.8 0.1 0.0028 16.5 0.0 1.6 1 0 0 1 1 1 1 FAD binding domain Thi4 PF01946.12 gi|257388055|ref|YP_003177828.1| - 0.002 17.2 0.0 0.0038 16.3 0.0 1.4 1 0 0 1 1 1 1 Thi4 family GIDA PF01134.17 gi|257388055|ref|YP_003177828.1| - 0.0027 16.6 0.0 0.0042 16.0 0.0 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A Pyr_redox_3 PF13738.1 gi|257388055|ref|YP_003177828.1| - 0.004 17.2 0.3 1.3 9.0 0.0 2.3 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|257388055|ref|YP_003177828.1| - 0.03 14.0 1.4 1.3 8.7 0.0 2.8 3 0 0 3 3 3 0 FAD-NAD(P)-binding DUF3959 PF13105.1 gi|257388057|ref|YP_003177830.1| - 0.0014 17.9 0.6 0.0047 16.2 0.0 1.9 1 1 1 2 2 2 1 Protein of unknown function (DUF3959) DUF981 PF06168.6 gi|257388057|ref|YP_003177830.1| - 0.0092 15.7 4.9 0.012 15.3 3.4 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF981) DUF4083 PF13314.1 gi|257388057|ref|YP_003177830.1| - 0.054 13.3 0.4 0.054 13.3 0.3 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4083) DUF3084 PF11283.3 gi|257388057|ref|YP_003177830.1| - 0.07 12.9 2.8 0.29 10.9 1.9 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF3084) DUF2636 PF11120.3 gi|257388057|ref|YP_003177830.1| - 0.086 12.3 0.5 0.086 12.3 0.3 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2636) Bax1-I PF01027.15 gi|257388057|ref|YP_003177830.1| - 0.17 11.4 6.9 0.22 11.0 4.8 1.2 1 0 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 FixQ PF05545.6 gi|257388057|ref|YP_003177830.1| - 0.2 11.3 0.1 0.2 11.3 0.0 1.8 2 0 0 2 2 2 0 Cbb3-type cytochrome oxidase component FixQ Bacteriocin_IId PF09221.5 gi|257388057|ref|YP_003177830.1| - 0.63 10.0 4.0 1.8 8.5 0.5 2.1 2 0 0 2 2 2 0 Bacteriocin class IId cyclical uberolysin-like Abhydrolase_9_N PF15420.1 gi|257388057|ref|YP_003177830.1| - 0.85 9.3 6.0 0.47 10.1 3.2 1.3 1 1 0 1 1 1 0 Alpha/beta-hydrolase family N-terminus SecE PF00584.15 gi|257388057|ref|YP_003177830.1| - 2.9 7.5 6.1 0.46 10.1 1.2 1.9 2 0 0 2 2 2 0 SecE/Sec61-gamma subunits of protein translocation complex NfeD PF01957.13 gi|257388057|ref|YP_003177830.1| - 6.2 6.9 9.7 0.54 10.3 0.4 2.0 1 1 1 2 2 2 0 NfeD-like C-terminal, partner-binding DGC PF08859.6 gi|257388059|ref|YP_003177832.1| - 7.8e-34 115.8 0.1 9e-34 115.6 0.0 1.0 1 0 0 1 1 1 1 DGC domain DUF2514 PF10721.4 gi|257388059|ref|YP_003177832.1| - 0.21 11.2 0.4 0.21 11.2 0.3 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF2514) HhH-GPD PF00730.20 gi|257388060|ref|YP_003177833.1| - 5.4e-17 62.0 0.0 8.4e-17 61.4 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH_5 PF14520.1 gi|257388060|ref|YP_003177833.1| - 2e-05 24.6 0.4 0.27 11.4 0.0 2.4 2 0 0 2 2 2 2 Helix-hairpin-helix domain HHH PF00633.18 gi|257388060|ref|YP_003177833.1| - 3.3e-05 23.3 0.1 0.00016 21.1 0.0 2.2 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_2 PF12826.2 gi|257388060|ref|YP_003177833.1| - 0.00066 19.5 0.0 0.47 10.3 0.0 2.3 2 0 0 2 2 2 2 Helix-hairpin-helix motif Usp PF00582.21 gi|257388061|ref|YP_003177834.1| - 3.3e-65 218.5 6.8 3.4e-32 111.5 0.2 2.0 2 0 0 2 2 2 2 Universal stress protein family DUF2411 PF10304.4 gi|257388061|ref|YP_003177834.1| - 0.16 11.5 1.2 1.3 8.6 0.1 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF2411) NAD_binding_8 PF13450.1 gi|257388062|ref|YP_003177835.1| - 2.5e-08 33.8 0.5 4.9e-08 32.8 0.3 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Amino_oxidase PF01593.19 gi|257388062|ref|YP_003177835.1| - 0.00062 18.9 1.7 0.087 11.8 0.0 2.1 1 1 1 2 2 2 2 Flavin containing amine oxidoreductase HBS1_N PF08938.5 gi|257388062|ref|YP_003177835.1| - 0.13 12.3 0.1 0.64 10.1 0.0 2.1 2 1 0 2 2 2 0 HBS1 N-terminus ATPgrasp_Ter PF15632.1 gi|257388063|ref|YP_003177836.1| - 9.7e-18 63.9 0.0 1.5e-16 60.0 0.0 2.0 1 1 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_4 PF13535.1 gi|257388063|ref|YP_003177836.1| - 1.4e-17 64.0 0.0 2.9e-17 63.0 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|257388063|ref|YP_003177836.1| - 0.0014 18.5 0.0 0.01 15.6 0.0 2.1 1 1 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|257388063|ref|YP_003177836.1| - 0.003 16.8 0.0 0.0047 16.2 0.0 1.2 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Beta_helix PF13229.1 gi|257388065|ref|YP_003177838.1| - 1.7e-10 40.9 6.5 1.2e-05 25.0 0.1 2.5 1 1 0 2 2 2 2 Right handed beta helix region Pectate_lyase_3 PF12708.2 gi|257388065|ref|YP_003177838.1| - 0.00038 20.6 0.4 0.1 12.6 0.0 2.7 1 1 0 2 2 2 2 Pectate lyase superfamily protein UCR_Fe-S_N PF10399.4 gi|257388065|ref|YP_003177838.1| - 0.088 11.9 0.3 0.21 10.8 0.2 1.6 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal DUF1616 PF07760.6 gi|257388066|ref|YP_003177839.1| - 3.8e-39 134.5 0.0 4.5e-39 134.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) SP_C-Propep PF08999.5 gi|257388066|ref|YP_003177839.1| - 1.6 8.2 5.2 5 6.6 0.1 2.8 3 0 0 3 3 3 0 Surfactant protein C, N terminal propeptide PMT_2 PF13231.1 gi|257388067|ref|YP_003177840.1| - 0.001 18.9 37.5 0.011 15.6 11.4 4.2 3 2 1 4 4 4 3 Dolichyl-phosphate-mannose-protein mannosyltransferase Glyco_trans_4_4 PF13579.1 gi|257388068|ref|YP_003177841.1| - 5.1e-12 46.2 0.8 5.1e-12 46.2 0.5 2.2 2 1 1 3 3 3 1 Glycosyl transferase 4-like domain Glycos_transf_1 PF00534.15 gi|257388068|ref|YP_003177841.1| - 1.9e-11 43.7 0.0 3.3e-11 42.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|257388068|ref|YP_003177841.1| - 6.2e-10 39.3 0.0 1.5e-09 38.0 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|257388068|ref|YP_003177841.1| - 4.3e-05 23.7 0.0 0.00011 22.4 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|257388068|ref|YP_003177841.1| - 5.9e-05 22.9 0.0 0.00072 19.3 0.0 2.1 1 1 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_4 PF13439.1 gi|257388068|ref|YP_003177841.1| - 0.00019 21.2 0.0 0.00032 20.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Epimerase_2 PF02350.14 gi|257388069|ref|YP_003177842.1| - 1.4e-99 333.1 0.0 1.6e-99 332.9 0.0 1.0 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase DUF354 PF04007.7 gi|257388070|ref|YP_003177843.1| - 5.9e-26 91.1 0.0 7.6e-26 90.7 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF354) Glyco_transf_28 PF03033.15 gi|257388070|ref|YP_003177843.1| - 0.00072 19.3 1.1 0.0019 17.9 0.4 1.9 2 0 0 2 2 2 1 Glycosyltransferase family 28 N-terminal domain Glyco_trans_4_4 PF13579.1 gi|257388070|ref|YP_003177843.1| - 0.0019 18.3 5.6 0.0029 17.7 2.0 2.5 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.1 gi|257388070|ref|YP_003177843.1| - 0.034 13.9 0.0 0.055 13.2 0.0 1.3 1 0 0 1 1 1 0 Glycosyl transferase 4-like Multi_ubiq PF14452.1 gi|257388070|ref|YP_003177843.1| - 0.091 12.7 0.0 3.6 7.6 0.0 2.5 2 0 0 2 2 2 0 Multiubiquitin HTH_20 PF12840.2 gi|257388071|ref|YP_003177844.1| - 0.0043 16.8 1.4 0.0069 16.1 1.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Tnp_Tc3_2 PF01498.13 gi|257388071|ref|YP_003177844.1| - 0.085 12.9 0.0 0.15 12.1 0.0 1.6 1 1 0 1 1 1 0 Transposase TrmB PF01978.14 gi|257388073|ref|YP_003177846.1| - 4e-16 58.4 0.0 6.5e-16 57.8 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF2250 PF10007.4 gi|257388073|ref|YP_003177846.1| - 0.012 15.5 0.0 0.029 14.2 0.0 1.7 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) Regulator_TrmB PF11495.3 gi|257388073|ref|YP_003177846.1| - 0.014 14.3 0.0 0.022 13.7 0.0 1.3 1 0 0 1 1 1 0 Archaeal transcriptional regulator TrmB EthD PF07110.6 gi|257388074|ref|YP_003177847.1| - 0.068 14.1 0.1 0.069 14.0 0.1 1.0 1 0 0 1 1 1 0 EthD domain HTH_20 PF12840.2 gi|257388075|ref|YP_003177848.1| - 0.0051 16.5 0.1 0.0085 15.8 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain UDPG_MGDP_dh_N PF03721.9 gi|257388076|ref|YP_003177849.1| - 2.3e-37 128.1 0.0 3.8e-37 127.4 0.0 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.14 gi|257388076|ref|YP_003177849.1| - 3.5e-17 62.4 0.0 6e-17 61.6 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.10 gi|257388076|ref|YP_003177849.1| - 3.1e-15 56.2 0.0 7.4e-15 55.0 0.0 1.6 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_binding_2 PF03446.10 gi|257388076|ref|YP_003177849.1| - 3.9e-05 23.5 0.2 0.00013 21.8 0.0 1.9 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|257388076|ref|YP_003177849.1| - 0.00011 22.0 0.7 0.00028 20.6 0.1 2.0 3 0 0 3 3 3 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.13 gi|257388076|ref|YP_003177849.1| - 0.0014 18.3 1.0 0.0025 17.4 0.1 1.9 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Methyltransf_18 PF12847.2 gi|257388076|ref|YP_003177849.1| - 0.028 14.9 0.0 1.2 9.7 0.0 2.8 2 1 0 2 2 2 0 Methyltransferase domain TrkA_N PF02254.13 gi|257388076|ref|YP_003177849.1| - 0.084 12.8 0.1 0.29 11.1 0.0 2.0 2 0 0 2 2 2 0 TrkA-N domain SdpI PF13630.1 gi|257388078|ref|YP_003177851.1| - 0.042 13.5 0.1 0.064 12.9 0.1 1.2 1 0 0 1 1 1 0 SdpI/YhfL protein family PepSY_TM PF03929.11 gi|257388078|ref|YP_003177851.1| - 0.087 13.2 0.6 0.087 13.2 0.4 2.3 2 0 0 2 2 2 0 PepSY-associated TM helix IncA PF04156.9 gi|257388078|ref|YP_003177851.1| - 8 6.0 8.0 15 5.1 5.6 1.4 1 0 0 1 1 1 0 IncA protein HTH_27 PF13463.1 gi|257388080|ref|YP_003177853.1| - 0.00017 21.8 0.1 0.00025 21.3 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|257388080|ref|YP_003177853.1| - 0.00017 21.3 0.1 0.00026 20.7 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_45 PF14947.1 gi|257388080|ref|YP_003177853.1| - 0.0039 16.9 0.0 0.0053 16.5 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix Replic_Relax PF13814.1 gi|257388080|ref|YP_003177853.1| - 0.01 15.6 0.0 0.014 15.2 0.0 1.2 1 0 0 1 1 1 0 Replication-relaxation HTH_29 PF13551.1 gi|257388080|ref|YP_003177853.1| - 0.018 15.1 0.5 0.024 14.7 0.1 1.4 2 0 0 2 2 1 0 Winged helix-turn helix HxlR PF01638.12 gi|257388080|ref|YP_003177853.1| - 0.037 13.6 0.0 0.089 12.4 0.0 1.6 2 0 0 2 2 2 0 HxlR-like helix-turn-helix HTH_1 PF00126.22 gi|257388080|ref|YP_003177853.1| - 0.045 13.5 0.1 0.086 12.5 0.0 1.5 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family TrmB PF01978.14 gi|257388080|ref|YP_003177853.1| - 0.051 13.2 0.1 0.11 12.1 0.0 1.6 2 1 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.1 gi|257388080|ref|YP_003177853.1| - 0.07 12.9 0.0 0.12 12.1 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain PadR PF03551.9 gi|257388080|ref|YP_003177853.1| - 0.11 12.3 0.0 0.17 11.6 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family Rrf2 PF02082.15 gi|257388080|ref|YP_003177853.1| - 0.14 12.2 0.0 0.28 11.3 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator DUF457 PF04307.9 gi|257388081|ref|YP_003177854.1| - 2.1e-12 46.6 9.8 2.6e-12 46.3 6.8 1.1 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) HTH_20 PF12840.2 gi|257388082|ref|YP_003177855.1| - 0.017 14.9 0.2 0.35 10.7 0.0 2.6 2 1 0 2 2 2 0 Helix-turn-helix domain Hexapep PF00132.19 gi|257388083|ref|YP_003177856.1| - 2.2e-30 102.7 15.7 1.3e-09 37.1 0.9 5.2 3 1 1 5 5 5 5 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|257388083|ref|YP_003177856.1| - 3.2e-19 68.1 11.6 3.3e-09 36.1 0.3 5.5 4 1 1 6 6 6 5 Hexapeptide repeat of succinyl-transferase DegT_DnrJ_EryC1 PF01041.12 gi|257388084|ref|YP_003177857.1| - 3.6e-124 414.4 0.0 4e-124 414.3 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|257388084|ref|YP_003177857.1| - 1.4e-07 30.9 0.1 3.6e-07 29.6 0.1 1.6 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_1_2 PF00155.16 gi|257388084|ref|YP_003177857.1| - 1.9e-07 30.4 0.0 3e-07 29.7 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.15 gi|257388084|ref|YP_003177857.1| - 0.13 10.4 0.0 0.21 9.8 0.0 1.2 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme GFO_IDH_MocA PF01408.17 gi|257388085|ref|YP_003177858.1| - 1.4e-25 90.1 0.6 2.7e-25 89.2 0.4 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold F420_oxidored PF03807.12 gi|257388085|ref|YP_003177858.1| - 1.1e-07 32.2 0.6 3.1e-07 30.7 0.1 2.0 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.7 gi|257388085|ref|YP_003177858.1| - 1.8e-05 24.1 0.3 3.3e-05 23.3 0.2 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain 2-Hacid_dh_C PF02826.14 gi|257388085|ref|YP_003177858.1| - 9.9e-05 21.5 0.1 0.00019 20.6 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Semialdhyde_dh PF01118.19 gi|257388085|ref|YP_003177858.1| - 0.0001 22.5 0.2 0.00033 20.9 0.2 1.9 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain CoA_binding PF02629.14 gi|257388085|ref|YP_003177858.1| - 0.0003 21.2 0.2 0.00075 19.9 0.1 1.7 1 0 0 1 1 1 1 CoA binding domain NAD_binding_2 PF03446.10 gi|257388085|ref|YP_003177858.1| - 0.00055 19.8 3.0 0.0012 18.7 0.4 2.6 1 1 1 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase Gp_dh_N PF00044.19 gi|257388085|ref|YP_003177858.1| - 0.0032 17.4 0.4 0.012 15.5 0.0 2.0 2 0 0 2 2 2 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 3HCDH_N PF02737.13 gi|257388085|ref|YP_003177858.1| - 0.016 14.8 2.4 0.017 14.8 0.3 1.9 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_3 PF03447.11 gi|257388085|ref|YP_003177858.1| - 0.019 15.3 2.2 0.019 15.3 1.5 2.5 2 1 0 2 2 2 0 Homoserine dehydrogenase, NAD binding domain Saccharop_dh PF03435.13 gi|257388085|ref|YP_003177858.1| - 0.019 13.9 1.3 0.034 13.1 0.9 1.4 1 0 0 1 1 1 0 Saccharopine dehydrogenase DapB_N PF01113.15 gi|257388085|ref|YP_003177858.1| - 0.033 14.1 3.3 0.07 13.0 0.2 2.7 3 0 0 3 3 3 0 Dihydrodipicolinate reductase, N-terminus GFO_IDH_MocA_C PF02894.12 gi|257388085|ref|YP_003177858.1| - 0.049 13.4 0.0 0.12 12.1 0.0 1.7 1 0 0 1 1 1 0 Oxidoreductase family, C-terminal alpha/beta domain Polysacc_deac_1 PF01522.16 gi|257388086|ref|YP_003177859.1| - 5.2e-09 35.7 0.0 1.2e-08 34.6 0.0 1.6 2 0 0 2 2 2 1 Polysaccharide deacetylase Epimerase PF01370.16 gi|257388087|ref|YP_003177860.1| - 9.2e-59 198.7 0.0 1.1e-58 198.4 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.10 gi|257388087|ref|YP_003177860.1| - 1.1e-17 63.8 0.0 2.1e-16 59.6 0.0 2.5 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.14 gi|257388087|ref|YP_003177860.1| - 3.7e-15 55.3 0.0 6.9e-15 54.4 0.0 1.4 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.12 gi|257388087|ref|YP_003177860.1| - 5.2e-15 55.0 0.0 6.6e-15 54.7 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.7 gi|257388087|ref|YP_003177860.1| - 4.3e-12 45.4 0.2 1.3e-09 37.3 0.1 2.2 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.1 gi|257388087|ref|YP_003177860.1| - 6.2e-11 42.6 0.2 1.2e-10 41.7 0.1 1.5 1 0 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|257388087|ref|YP_003177860.1| - 2.3e-05 24.3 0.2 6.2e-05 22.9 0.1 1.8 1 0 0 1 1 1 1 short chain dehydrogenase Epimerase_Csub PF13950.1 gi|257388087|ref|YP_003177860.1| - 4.4e-05 23.3 0.0 9.1e-05 22.3 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose 4-epimerase C-term subunit NmrA PF05368.8 gi|257388087|ref|YP_003177860.1| - 0.0062 15.8 1.0 0.017 14.3 0.2 2.0 2 1 0 2 2 2 1 NmrA-like family TrkA_N PF02254.13 gi|257388087|ref|YP_003177860.1| - 0.031 14.2 0.1 0.063 13.2 0.1 1.5 1 0 0 1 1 1 0 TrkA-N domain Semialdhyde_dh PF01118.19 gi|257388087|ref|YP_003177860.1| - 0.12 12.6 0.2 0.34 11.2 0.1 1.9 1 1 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain Saccharop_dh PF03435.13 gi|257388087|ref|YP_003177860.1| - 0.15 11.0 0.4 0.24 10.3 0.2 1.3 1 0 0 1 1 1 0 Saccharopine dehydrogenase KR PF08659.5 gi|257388087|ref|YP_003177860.1| - 0.25 10.9 2.0 4.9 6.7 1.4 2.7 1 1 0 1 1 1 0 KR domain Glycos_transf_2 PF00535.21 gi|257388088|ref|YP_003177861.1| - 2.6e-19 69.5 0.1 1.4e-18 67.1 0.1 2.0 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|257388088|ref|YP_003177861.1| - 4.9e-08 33.0 0.1 7.2e-08 32.5 0.1 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 SIS PF01380.17 gi|257388090|ref|YP_003177863.1| - 8.7e-48 161.2 0.0 1.6e-22 79.5 0.1 2.3 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.1 gi|257388090|ref|YP_003177863.1| - 2.8e-22 79.1 0.2 6.6e-22 77.8 0.1 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|257388090|ref|YP_003177863.1| - 2.1e-19 69.4 0.2 6e-14 51.5 0.0 2.8 1 1 1 2 2 2 2 Glutamine amidotransferases class-II GATase_7 PF13537.1 gi|257388090|ref|YP_003177863.1| - 1.6e-18 66.6 0.0 2.6e-18 65.9 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.1 gi|257388090|ref|YP_003177863.1| - 0.0051 15.5 0.0 0.0077 14.9 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II DUF4154 PF13689.1 gi|257388090|ref|YP_003177863.1| - 0.12 12.0 0.0 0.26 10.8 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4154) OrfB_IS605 PF01385.14 gi|257388091|ref|YP_003177864.1| - 1e-43 149.3 0.0 1.3e-43 149.0 0.0 1.1 1 0 0 1 1 1 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|257388091|ref|YP_003177864.1| - 1.5e-23 82.1 1.6 2.9e-23 81.2 1.1 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Glycos_transf_2 PF00535.21 gi|257388093|ref|YP_003177866.1| - 3.6e-19 69.0 0.0 5.1e-19 68.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|257388093|ref|YP_003177866.1| - 5.7e-19 68.8 3.6 2e-11 44.1 0.6 2.1 1 1 1 2 2 2 2 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|257388093|ref|YP_003177866.1| - 4.4e-09 36.3 2.1 5.5e-08 32.7 1.2 2.1 1 1 1 2 2 2 1 Glycosyl transferase family group 2 Glyco_tranf_2_2 PF10111.4 gi|257388093|ref|YP_003177866.1| - 1.2e-05 24.5 0.0 0.042 12.9 0.0 2.1 1 1 1 2 2 2 2 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.1 gi|257388093|ref|YP_003177866.1| - 0.0014 17.9 0.0 0.016 14.5 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferase family 21 Glyco_transf_7C PF02709.9 gi|257388093|ref|YP_003177866.1| - 0.023 14.1 0.0 0.045 13.2 0.0 1.4 1 0 0 1 1 1 0 N-terminal domain of galactosyltransferase Glyco_tranf_2_4 PF13704.1 gi|257388093|ref|YP_003177866.1| - 0.094 13.0 0.0 0.17 12.1 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase family 2 Polysacc_synt_C PF14667.1 gi|257388094|ref|YP_003177867.1| - 2.4e-18 66.3 13.7 2.4e-18 66.3 9.5 4.3 5 1 0 5 5 5 1 Polysaccharide biosynthesis C-terminal domain Polysacc_synt PF01943.12 gi|257388094|ref|YP_003177867.1| - 7.4e-15 54.9 8.9 7.4e-15 54.9 6.2 1.8 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein MVIN PF03023.9 gi|257388094|ref|YP_003177867.1| - 1.1e-07 30.6 6.8 1.1e-07 30.6 4.7 2.2 2 1 1 3 3 3 1 MviN-like protein AAA_23 PF13476.1 gi|257388095|ref|YP_003177868.1| - 1.1e-08 35.6 48.6 27 5.0 33.7 4.6 1 1 0 1 1 1 0 AAA domain AAA_13 PF13166.1 gi|257388095|ref|YP_003177868.1| - 4.8e-08 31.9 43.2 5.5e-05 21.8 12.4 3.1 2 1 0 2 2 2 2 AAA domain Reo_sigmaC PF04582.7 gi|257388095|ref|YP_003177868.1| - 8.1e-07 28.5 14.5 0.0066 15.6 1.0 3.9 1 1 2 3 3 3 2 Reovirus sigma C capsid protein Myosin_tail_1 PF01576.14 gi|257388095|ref|YP_003177868.1| - 1.3e-06 26.4 69.7 0.0016 16.2 19.9 2.3 2 0 0 2 2 2 2 Myosin tail Filament PF00038.16 gi|257388095|ref|YP_003177868.1| - 4.3e-06 26.4 63.1 0.0038 16.7 4.3 4.1 1 1 2 3 3 3 2 Intermediate filament protein Spc7 PF08317.6 gi|257388095|ref|YP_003177868.1| - 4.5e-06 25.5 58.2 0.003 16.2 6.9 4.2 2 2 2 4 4 4 3 Spc7 kinetochore protein DivIC PF04977.10 gi|257388095|ref|YP_003177868.1| - 4.7e-06 26.0 66.5 0.09 12.2 2.5 8.6 2 2 5 8 8 8 5 Septum formation initiator IncA PF04156.9 gi|257388095|ref|YP_003177868.1| - 7.4e-06 25.6 79.8 0.0012 18.4 21.2 4.4 2 2 2 4 4 4 3 IncA protein Baculo_PEP_C PF04513.7 gi|257388095|ref|YP_003177868.1| - 1.8e-05 24.6 20.4 0.038 13.8 0.1 5.1 2 2 2 4 4 4 3 Baculovirus polyhedron envelope protein, PEP, C terminus GAS PF13851.1 gi|257388095|ref|YP_003177868.1| - 2.5e-05 23.5 54.7 0.017 14.3 17.3 4.0 2 2 1 3 3 3 3 Growth-arrest specific micro-tubule binding Seryl_tRNA_N PF02403.17 gi|257388095|ref|YP_003177868.1| - 2.6e-05 24.2 55.7 0.0028 17.6 2.5 5.1 2 2 3 5 5 5 2 Seryl-tRNA synthetase N-terminal domain Atg14 PF10186.4 gi|257388095|ref|YP_003177868.1| - 3.5e-05 22.9 53.0 0.0059 15.5 2.7 4.2 2 2 2 4 4 4 4 UV radiation resistance protein and autophagy-related subunit 14 Tropomyosin_1 PF12718.2 gi|257388095|ref|YP_003177868.1| - 5.5e-05 23.0 77.9 0.0017 18.2 12.6 4.8 2 2 3 5 5 5 2 Tropomyosin like ALIX_LYPXL_bnd PF13949.1 gi|257388095|ref|YP_003177868.1| - 0.00032 19.7 20.5 0.00032 19.7 14.2 2.5 2 1 0 2 2 1 1 ALIX V-shaped domain binding to HIV CENP-F_leu_zip PF10473.4 gi|257388095|ref|YP_003177868.1| - 0.00077 19.3 69.9 0.76 9.6 4.6 4.8 2 2 1 3 3 3 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 WEMBL PF05701.6 gi|257388095|ref|YP_003177868.1| - 0.0011 17.4 55.7 0.0052 15.3 17.8 2.7 2 1 0 2 2 2 1 Weak chloroplast movement under blue light TPR_MLP1_2 PF07926.7 gi|257388095|ref|YP_003177868.1| - 0.0027 17.4 57.9 0.11 12.2 13.2 5.3 2 2 3 5 5 5 4 TPR/MLP1/MLP2-like protein EzrA PF06160.7 gi|257388095|ref|YP_003177868.1| - 0.0029 15.8 48.7 0.044 11.9 11.0 2.5 2 1 0 2 2 2 2 Septation ring formation regulator, EzrA FlxA PF14282.1 gi|257388095|ref|YP_003177868.1| - 0.0034 17.3 1.6 0.0034 17.3 1.1 5.3 3 2 1 5 5 5 1 FlxA-like protein FliJ PF02050.11 gi|257388095|ref|YP_003177868.1| - 0.0064 16.5 48.6 0.2 11.6 1.3 4.7 3 1 1 4 4 4 2 Flagellar FliJ protein APG6 PF04111.7 gi|257388095|ref|YP_003177868.1| - 0.01 14.9 65.8 0.012 14.6 12.1 4.1 2 2 2 4 4 4 0 Autophagy protein Apg6 DUF1633 PF07794.6 gi|257388095|ref|YP_003177868.1| - 0.038 11.9 10.2 0.081 10.8 7.1 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1633) Fib_alpha PF08702.5 gi|257388095|ref|YP_003177868.1| - 0.045 13.8 36.3 0.027 14.5 3.5 4.4 3 1 1 4 4 4 0 Fibrinogen alpha/beta chain family Laminin_II PF06009.7 gi|257388095|ref|YP_003177868.1| - 0.059 13.1 31.1 0.2 11.3 2.9 5.1 3 2 4 7 7 6 0 Laminin Domain II COG2 PF06148.6 gi|257388095|ref|YP_003177868.1| - 0.075 12.8 41.0 0.13 12.1 2.8 6.0 2 2 3 5 5 5 0 COG (conserved oligomeric Golgi) complex component, COG2 TMF_TATA_bd PF12325.3 gi|257388095|ref|YP_003177868.1| - 0.09 12.5 71.4 0.023 14.4 3.2 6.5 2 2 4 6 6 6 0 TATA element modulatory factor 1 TATA binding NPV_P10 PF05531.7 gi|257388095|ref|YP_003177868.1| - 0.14 12.4 31.5 0.26 11.5 0.8 6.6 2 2 1 6 6 6 0 Nucleopolyhedrovirus P10 protein TBPIP PF07106.8 gi|257388095|ref|YP_003177868.1| - 0.2 11.1 54.7 0.018 14.6 2.5 5.1 2 2 3 5 5 5 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) ATG16 PF08614.6 gi|257388095|ref|YP_003177868.1| - 0.22 11.3 65.7 0.35 10.6 15.1 5.3 2 2 2 4 4 4 0 Autophagy protein 16 (ATG16) DUF3584 PF12128.3 gi|257388095|ref|YP_003177868.1| - 0.28 8.4 60.1 0.11 9.8 18.1 2.4 1 1 0 2 2 2 0 Protein of unknown function (DUF3584) Phage_GP20 PF06810.6 gi|257388095|ref|YP_003177868.1| - 0.31 10.4 54.6 0.29 10.5 2.1 5.4 3 2 3 6 6 6 0 Phage minor structural protein GP20 DUF972 PF06156.8 gi|257388095|ref|YP_003177868.1| - 0.32 11.3 45.1 0.63 10.4 6.3 5.9 2 2 3 5 5 5 0 Protein of unknown function (DUF972) MAD PF05557.8 gi|257388095|ref|YP_003177868.1| - 0.32 9.0 55.8 0.017 13.2 22.1 3.2 1 1 2 3 3 3 0 Mitotic checkpoint protein AAA_27 PF13514.1 gi|257388095|ref|YP_003177868.1| - 0.41 8.2 61.9 0.38 8.3 16.0 3.4 2 2 1 3 3 3 0 AAA domain DUF3450 PF11932.3 gi|257388095|ref|YP_003177868.1| - 0.42 9.8 50.0 0.018 14.2 5.8 5.6 3 2 3 6 6 6 0 Protein of unknown function (DUF3450) FlaC_arch PF05377.6 gi|257388095|ref|YP_003177868.1| - 0.47 10.3 44.1 1.8 8.4 0.9 8.3 4 3 4 8 8 8 0 Flagella accessory protein C (FlaC) BLOC1_2 PF10046.4 gi|257388095|ref|YP_003177868.1| - 0.56 10.3 49.3 1.5 8.9 1.3 7.1 2 2 5 7 7 7 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 WXG100 PF06013.7 gi|257388095|ref|YP_003177868.1| - 0.66 10.0 26.5 15 5.6 0.6 7.8 4 3 4 8 8 8 0 Proteins of 100 residues with WXG DUF948 PF06103.6 gi|257388095|ref|YP_003177868.1| - 0.75 9.7 18.5 1.4 8.8 0.6 5.2 3 2 2 5 5 5 0 Bacterial protein of unknown function (DUF948) Prefoldin PF02996.12 gi|257388095|ref|YP_003177868.1| - 0.86 9.2 51.1 0.43 10.2 1.7 8.6 3 3 5 9 9 9 0 Prefoldin subunit PspA_IM30 PF04012.7 gi|257388095|ref|YP_003177868.1| - 0.88 8.8 48.9 4.2 6.6 1.6 5.8 2 2 2 5 5 5 0 PspA/IM30 family Prefoldin_2 PF01920.15 gi|257388095|ref|YP_003177868.1| - 0.96 9.2 67.8 5 6.9 4.8 8.9 2 2 3 5 5 5 0 Prefoldin subunit IFT57 PF10498.4 gi|257388095|ref|YP_003177868.1| - 2.9 6.5 48.1 0.14 10.8 14.2 3.4 2 2 1 3 3 3 0 Intra-flagellar transport protein 57 ADIP PF11559.3 gi|257388095|ref|YP_003177868.1| - 2.9 7.7 57.5 1.9 8.3 5.2 5.8 2 2 4 6 6 6 0 Afadin- and alpha -actinin-Binding MscS_porin PF12795.2 gi|257388095|ref|YP_003177868.1| - 3.2 7.0 57.0 6.4 6.0 18.2 3.6 2 2 0 2 2 2 0 Mechanosensitive ion channel porin domain Mnd1 PF03962.10 gi|257388095|ref|YP_003177868.1| - 3.4 7.3 56.6 3.5 7.2 2.7 5.0 1 1 3 4 4 3 0 Mnd1 family TMF_DNA_bd PF12329.3 gi|257388095|ref|YP_003177868.1| - 3.6 7.4 65.8 0.34 10.7 6.4 8.0 3 3 3 7 7 7 0 TATA element modulatory factor 1 DNA binding ERM PF00769.14 gi|257388095|ref|YP_003177868.1| - 4.6 6.7 66.1 0.14 11.6 15.1 3.8 1 1 3 4 4 4 0 Ezrin/radixin/moesin family HALZ PF02183.13 gi|257388095|ref|YP_003177868.1| - 4.7 7.0 30.6 7.9 6.2 0.6 6.3 6 0 0 6 6 5 0 Homeobox associated leucine zipper DUF342 PF03961.8 gi|257388095|ref|YP_003177868.1| - 5.7 5.2 43.3 1.1 7.6 2.3 4.3 1 1 2 4 4 4 0 Protein of unknown function (DUF342) HrpB7 PF09486.5 gi|257388095|ref|YP_003177868.1| - 6.2 6.7 48.5 1.2 9.0 3.9 5.9 2 2 3 5 5 5 0 Bacterial type III secretion protein (HrpB7) CENP-Q PF13094.1 gi|257388095|ref|YP_003177868.1| - 6.8 6.6 55.3 1.3 9.0 18.8 3.2 1 1 0 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit Flagellin_C PF00700.16 gi|257388095|ref|YP_003177868.1| - 8.6 6.6 13.8 0.75 9.9 0.7 4.5 3 1 1 4 4 4 0 Bacterial flagellin C-terminal helical region Relaxase PF03432.9 gi|257388096|ref|YP_003177869.1| - 0.0059 16.0 0.3 0.01 15.2 0.2 1.4 1 1 0 1 1 1 1 Relaxase/Mobilisation nuclease domain BolA PF01722.13 gi|257388097|ref|YP_003177870.1| - 4.7e-18 64.9 0.0 5.2e-18 64.7 0.0 1.1 1 0 0 1 1 1 1 BolA-like protein Glutaredoxin PF00462.19 gi|257388098|ref|YP_003177871.1| - 7.7e-14 51.4 0.0 1.1e-13 50.9 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin GST_N_3 PF13417.1 gi|257388098|ref|YP_003177871.1| - 0.13 12.4 0.0 0.19 11.9 0.0 1.2 1 0 0 1 1 1 0 Glutathione S-transferase, N-terminal domain Beta-Casp PF10996.3 gi|257388099|ref|YP_003177872.1| - 3.1e-32 111.1 0.0 6.1e-32 110.2 0.0 1.5 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B PF00753.22 gi|257388099|ref|YP_003177872.1| - 1.9e-21 76.6 3.7 3.4e-21 75.7 2.6 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|257388099|ref|YP_003177872.1| - 1.9e-14 53.1 0.1 5.1e-14 51.8 0.0 1.8 1 0 0 1 1 1 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|257388099|ref|YP_003177872.1| - 3.3e-13 49.6 0.3 6.5e-12 45.4 0.1 2.4 2 0 0 2 2 2 1 Beta-lactamase superfamily domain KH_4 PF13083.1 gi|257388099|ref|YP_003177872.1| - 0.00024 20.7 0.0 0.00064 19.3 0.0 1.7 1 0 0 1 1 1 1 KH domain KH_2 PF07650.12 gi|257388099|ref|YP_003177872.1| - 0.00026 20.4 0.0 0.0012 18.4 0.0 2.1 2 0 0 2 2 2 1 KH domain Lactamase_B_3 PF13483.1 gi|257388099|ref|YP_003177872.1| - 0.0005 19.8 0.0 0.0014 18.4 0.0 1.8 1 1 0 1 1 1 1 Beta-lactamase superfamily domain KH_1 PF00013.24 gi|257388099|ref|YP_003177872.1| - 0.024 14.3 0.0 0.054 13.1 0.0 1.6 1 0 0 1 1 1 0 KH domain Beta_elim_lyase PF01212.16 gi|257388100|ref|YP_003177873.1| - 6.1e-81 271.7 0.2 7e-81 271.5 0.1 1.0 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|257388100|ref|YP_003177873.1| - 2e-05 23.8 0.0 0.0081 15.2 0.0 2.3 2 0 0 2 2 2 2 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.15 gi|257388100|ref|YP_003177873.1| - 0.00096 17.5 0.0 0.0014 17.0 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Ub-Mut7C PF14451.1 gi|257388100|ref|YP_003177873.1| - 0.13 11.7 0.3 0.7 9.4 0.0 2.1 2 0 0 2 2 2 0 Mut7-C ubiquitin HxlR PF01638.12 gi|257388101|ref|YP_003177874.1| - 1.7e-27 94.8 0.0 2.1e-27 94.6 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix PadR PF03551.9 gi|257388101|ref|YP_003177874.1| - 0.0049 16.6 0.0 0.007 16.1 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|257388101|ref|YP_003177874.1| - 0.03 14.6 0.0 0.045 14.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain TrmB PF01978.14 gi|257388101|ref|YP_003177874.1| - 0.034 13.8 0.0 0.049 13.3 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.1 gi|257388101|ref|YP_003177874.1| - 0.12 12.1 0.0 0.17 11.7 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_20 PF12840.2 gi|257388101|ref|YP_003177874.1| - 0.14 12.0 0.0 0.21 11.4 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.2 gi|257388102|ref|YP_003177875.1| - 4.1e-06 26.3 0.0 5.2e-06 26.0 0.0 1.2 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|257388102|ref|YP_003177875.1| - 6.2e-05 22.6 0.0 8.1e-05 22.2 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|257388102|ref|YP_003177875.1| - 0.00018 21.2 0.1 0.00023 20.8 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|257388102|ref|YP_003177875.1| - 0.00045 19.7 0.2 0.00063 19.2 0.1 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|257388102|ref|YP_003177875.1| - 0.0012 18.1 0.0 0.0017 17.6 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|257388102|ref|YP_003177875.1| - 0.0019 18.5 0.1 0.0026 18.0 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_43 PF09904.4 gi|257388102|ref|YP_003177875.1| - 0.0046 16.7 0.0 0.0064 16.2 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn helix TFIIE_alpha PF02002.12 gi|257388102|ref|YP_003177875.1| - 0.01 15.3 0.0 0.012 15.0 0.0 1.1 1 0 0 1 1 1 0 TFIIE alpha subunit Rrf2 PF02082.15 gi|257388102|ref|YP_003177875.1| - 0.023 14.8 0.0 0.033 14.3 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator HTH_11 PF08279.7 gi|257388102|ref|YP_003177875.1| - 0.027 14.1 0.0 0.037 13.6 0.0 1.2 1 0 0 1 1 1 0 HTH domain GntR PF00392.16 gi|257388102|ref|YP_003177875.1| - 0.042 13.2 0.8 0.069 12.6 0.3 1.5 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family AMP-binding PF00501.23 gi|257388103|ref|YP_003177876.1| - 6e-82 275.2 0.0 9.3e-82 274.6 0.0 1.3 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|257388103|ref|YP_003177876.1| - 1.7e-18 67.3 0.1 4.4e-18 66.0 0.1 1.8 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain DUF1967 PF09269.6 gi|257388103|ref|YP_003177876.1| - 0.059 13.0 0.0 0.34 10.6 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1967) CBS PF00571.23 gi|257388104|ref|YP_003177877.1| - 4.1e-28 96.9 6.2 5.4e-15 54.8 0.6 2.0 2 0 0 2 2 2 2 CBS domain ABC2_membrane_3 PF12698.2 gi|257388104|ref|YP_003177877.1| - 0.054 12.5 0.0 0.056 12.4 0.0 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein ROK PF00480.15 gi|257388105|ref|YP_003177878.1| - 7.8e-29 100.7 0.8 1.1e-28 100.2 0.0 1.6 2 0 0 2 2 2 1 ROK family DUF1508 PF07411.7 gi|257388106|ref|YP_003177879.1| - 2.3e-82 270.2 6.0 1.1e-18 66.4 0.1 5.5 5 0 0 5 5 5 5 Domain of unknown function (DUF1508) Inhibitor_I42 PF09394.5 gi|257388106|ref|YP_003177879.1| - 0.001 19.3 0.1 1.2 9.5 0.0 3.9 4 0 0 4 4 4 1 Chagasin family peptidase inhibitor I42 DUF998 PF06197.8 gi|257388106|ref|YP_003177879.1| - 0.016 14.5 10.4 0.026 13.8 7.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF998) DUF3359 PF11839.3 gi|257388106|ref|YP_003177879.1| - 0.022 15.0 5.9 0.1 12.9 4.1 2.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3359) Tombus_P19 PF03220.8 gi|257388106|ref|YP_003177879.1| - 0.031 13.6 0.3 54 3.0 0.0 3.9 3 1 1 4 4 4 0 Tombusvirus P19 core protein OATP PF03137.15 gi|257388106|ref|YP_003177879.1| - 0.042 11.9 0.0 0.058 11.4 0.0 1.1 1 0 0 1 1 1 0 Organic Anion Transporter Polypeptide (OATP) family DUF948 PF06103.6 gi|257388106|ref|YP_003177879.1| - 0.07 12.9 0.0 0.17 11.7 0.0 1.6 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF948) Yip1 PF04893.12 gi|257388106|ref|YP_003177879.1| - 0.093 12.2 7.9 0.17 11.3 5.5 1.3 1 0 0 1 1 1 0 Yip1 domain DUF3748 PF12566.3 gi|257388106|ref|YP_003177879.1| - 0.15 12.0 0.3 37 4.2 0.0 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF3748) HTH_24 PF13412.1 gi|257388107|ref|YP_003177880.1| - 1.8e-08 33.5 0.0 2.9e-08 32.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|257388107|ref|YP_003177880.1| - 6.1e-08 32.2 0.0 1.5e-07 30.9 0.0 1.6 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|257388107|ref|YP_003177880.1| - 1.8e-06 27.5 0.0 3.4e-06 26.6 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|257388107|ref|YP_003177880.1| - 4.9e-06 26.7 0.0 1.3e-05 25.4 0.0 1.7 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_11 PF08279.7 gi|257388107|ref|YP_003177880.1| - 7.7e-06 25.4 0.0 1.3e-05 24.6 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_45 PF14947.1 gi|257388107|ref|YP_003177880.1| - 3.4e-05 23.5 0.0 5.4e-05 22.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DUF4423 PF14394.1 gi|257388107|ref|YP_003177880.1| - 0.00014 21.4 0.0 0.00021 20.8 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) HTH_Crp_2 PF13545.1 gi|257388107|ref|YP_003177880.1| - 0.00021 20.9 0.0 0.00046 19.9 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_IclR PF09339.5 gi|257388107|ref|YP_003177880.1| - 0.00029 20.3 0.0 0.0006 19.3 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_12 PF08461.5 gi|257388107|ref|YP_003177880.1| - 0.00068 19.3 0.0 0.0019 17.8 0.0 1.8 2 0 0 2 2 1 1 Ribonuclease R winged-helix domain Rrf2 PF02082.15 gi|257388107|ref|YP_003177880.1| - 0.0025 17.9 0.0 0.0057 16.7 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator HTH_13 PF11972.3 gi|257388107|ref|YP_003177880.1| - 0.0072 16.1 0.0 0.06 13.2 0.0 2.3 1 1 1 2 2 2 1 HTH DNA binding domain TrmB PF01978.14 gi|257388107|ref|YP_003177880.1| - 0.012 15.2 0.0 0.021 14.5 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|257388107|ref|YP_003177880.1| - 0.013 15.2 0.0 0.066 13.0 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain DUF387 PF04079.11 gi|257388107|ref|YP_003177880.1| - 0.013 14.8 0.2 0.048 13.0 0.1 1.8 2 0 0 2 2 2 0 Putative transcriptional regulators (Ypuh-like) HU-DNA_bdg PF14848.1 gi|257388107|ref|YP_003177880.1| - 0.018 14.7 0.4 0.07 12.8 0.1 2.1 1 1 1 2 2 2 0 DNA-binding domain EAP30 PF04157.11 gi|257388107|ref|YP_003177880.1| - 0.04 13.0 0.1 0.076 12.1 0.1 1.4 1 0 0 1 1 1 0 EAP30/Vps36 family Rio2_N PF09202.6 gi|257388107|ref|YP_003177880.1| - 0.046 13.7 0.0 0.082 12.9 0.0 1.4 1 0 0 1 1 1 0 Rio2, N-terminal FaeA PF04703.7 gi|257388107|ref|YP_003177880.1| - 0.082 13.0 1.0 0.15 12.2 0.0 1.9 2 0 0 2 2 1 0 FaeA-like protein Sigma70_r4_2 PF08281.7 gi|257388107|ref|YP_003177880.1| - 0.1 12.0 0.0 0.2 11.1 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_5 PF01022.15 gi|257388107|ref|YP_003177880.1| - 0.11 12.1 0.0 0.21 11.3 0.0 1.5 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family RuvB_C PF05491.8 gi|257388107|ref|YP_003177880.1| - 0.12 12.0 0.0 0.24 11.0 0.0 1.5 1 0 0 1 1 1 0 Holliday junction DNA helicase ruvB C-terminus HTH_3 PF01381.17 gi|257388107|ref|YP_003177880.1| - 0.12 12.1 0.1 0.26 11.1 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix DUF977 PF06163.6 gi|257388107|ref|YP_003177880.1| - 0.13 11.9 0.1 0.2 11.3 0.1 1.3 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) DUF4364 PF14277.1 gi|257388107|ref|YP_003177880.1| - 0.14 11.7 0.0 0.23 11.0 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) HTH_36 PF13730.1 gi|257388107|ref|YP_003177880.1| - 0.15 12.1 0.0 0.22 11.6 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Arylsulfotrans PF05935.6 gi|257388109|ref|YP_003177882.1| - 1.1e-06 27.4 5.3 1.2e-06 27.3 2.3 2.0 2 1 0 2 2 2 1 Arylsulfotransferase (ASST) Arylsulfotran_2 PF14269.1 gi|257388109|ref|YP_003177882.1| - 9.6e-06 24.9 3.2 0.0005 19.3 2.2 2.4 1 1 0 1 1 1 1 Arylsulfotransferase (ASST) Arch_ATPase PF01637.13 gi|257388110|ref|YP_003177883.1| - 2.2e-31 109.3 0.0 3.1e-31 108.8 0.0 1.2 1 0 0 1 1 1 1 Archaeal ATPase DUF234 PF03008.9 gi|257388110|ref|YP_003177883.1| - 8.2e-27 93.2 0.0 1.8e-26 92.2 0.0 1.5 1 0 0 1 1 1 1 Archaea bacterial proteins of unknown function AAA_14 PF13173.1 gi|257388110|ref|YP_003177883.1| - 1.6e-06 28.0 0.0 3.3e-06 27.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|257388110|ref|YP_003177883.1| - 0.00062 19.9 0.0 0.0012 19.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain HTH_IclR PF09339.5 gi|257388110|ref|YP_003177883.1| - 0.00067 19.1 0.0 0.0012 18.3 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_45 PF14947.1 gi|257388110|ref|YP_003177883.1| - 0.038 13.7 0.0 0.078 12.8 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix AAA_16 PF13191.1 gi|257388110|ref|YP_003177883.1| - 0.053 13.4 0.0 0.13 12.1 0.0 1.7 1 1 0 1 1 1 0 AAA ATPase domain HTH_5 PF01022.15 gi|257388110|ref|YP_003177883.1| - 0.059 13.0 0.0 0.12 12.0 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|257388110|ref|YP_003177883.1| - 0.12 11.8 0.0 0.22 10.9 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding zf-FCS PF06467.9 gi|257388111|ref|YP_003177884.1| - 0.0099 15.4 0.9 0.065 12.8 0.6 1.9 1 1 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif NTP_transferase PF00483.18 gi|257388112|ref|YP_003177885.1| - 4.8e-40 137.4 0.0 6.8e-40 136.9 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|257388112|ref|YP_003177885.1| - 1.2e-15 57.9 0.2 2e-15 57.2 0.2 1.4 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.19 gi|257388112|ref|YP_003177885.1| - 5.5e-09 35.1 16.0 0.0053 16.2 0.0 4.6 3 1 1 4 4 4 3 Bacterial transferase hexapeptide (six repeats) IspD PF01128.14 gi|257388112|ref|YP_003177885.1| - 1.7e-05 24.4 0.0 2.8e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase HATPase_c PF02518.21 gi|257388113|ref|YP_003177886.1| - 3.1e-18 65.4 0.1 1.1e-17 63.7 0.1 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|257388113|ref|YP_003177886.1| - 1.1e-15 57.5 1.7 1.6e-15 57.0 0.6 1.7 2 0 0 2 2 2 1 PAS fold HisKA PF00512.20 gi|257388113|ref|YP_003177886.1| - 6.3e-14 51.7 2.4 3.5e-13 49.3 1.5 2.2 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_9 PF13426.1 gi|257388113|ref|YP_003177886.1| - 6.9e-10 39.2 0.1 1.5e-09 38.1 0.0 1.6 2 0 0 2 2 2 1 PAS domain PAS PF00989.19 gi|257388113|ref|YP_003177886.1| - 1.2e-05 25.0 0.0 2.5e-05 24.0 0.0 1.6 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.1 gi|257388113|ref|YP_003177886.1| - 8.8e-05 22.2 0.2 0.00042 20.0 0.0 2.2 2 0 0 2 2 2 1 PAS domain PAS_3 PF08447.6 gi|257388113|ref|YP_003177886.1| - 0.0035 17.3 0.1 0.0072 16.4 0.1 1.6 1 0 0 1 1 1 1 PAS fold HATPase_c_3 PF13589.1 gi|257388113|ref|YP_003177886.1| - 0.0063 16.1 0.0 0.014 15.0 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 3HCDH_N PF02737.13 gi|257388114|ref|YP_003177887.1| - 1e-65 220.7 0.1 2.3e-65 219.6 0.1 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ECH PF00378.15 gi|257388114|ref|YP_003177887.1| - 2.8e-63 213.3 0.0 4.2e-63 212.7 0.0 1.2 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family 3HCDH PF00725.17 gi|257388114|ref|YP_003177887.1| - 1e-47 160.4 2.1 3e-32 110.8 0.0 3.6 3 0 0 3 3 3 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_Gly3P_dh_N PF01210.18 gi|257388114|ref|YP_003177887.1| - 2.9e-07 30.3 0.0 7.3e-07 29.0 0.0 1.7 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_2 PF03446.10 gi|257388114|ref|YP_003177887.1| - 2.8e-05 24.0 0.4 7.8e-05 22.5 0.3 1.8 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|257388114|ref|YP_003177887.1| - 0.005 17.2 3.1 0.071 13.5 2.1 2.7 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Glyco_tranf_2_3 PF13641.1 gi|257388114|ref|YP_003177887.1| - 0.054 13.2 0.0 0.1 12.3 0.0 1.4 1 0 0 1 1 1 0 Glycosyltransferase like family 2 2-Hacid_dh_C PF02826.14 gi|257388114|ref|YP_003177887.1| - 0.16 11.0 0.6 0.67 9.0 0.4 1.9 1 1 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Acyl-CoA_dh_1 PF00441.19 gi|257388115|ref|YP_003177888.1| - 1.5e-52 177.6 1.6 2.3e-52 177.1 1.1 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|257388115|ref|YP_003177888.1| - 5.9e-32 110.5 1.8 3.7e-31 108.0 0.1 2.6 3 0 0 3 3 3 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.6 gi|257388115|ref|YP_003177888.1| - 7.3e-25 87.7 2.4 1.1e-24 87.1 1.7 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|257388115|ref|YP_003177888.1| - 1.3e-21 75.7 0.1 2.5e-21 74.9 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Elf-1_N PF12310.3 gi|257388115|ref|YP_003177888.1| - 0.11 12.5 0.8 0.81 9.6 0.0 2.4 2 0 0 2 2 2 0 Transcription factor protein N terminal SnoaL_3 PF13474.1 gi|257388115|ref|YP_003177888.1| - 0.17 11.9 1.1 0.43 10.6 0.1 2.2 2 1 0 2 2 2 0 SnoaL-like domain PPK2 PF03976.9 gi|257388116|ref|YP_003177889.1| - 0.0029 16.9 0.0 0.0032 16.7 0.0 1.1 1 0 0 1 1 1 1 Polyphosphate kinase 2 (PPK2) HhH-GPD PF00730.20 gi|257388117|ref|YP_003177890.1| - 2.2e-15 56.8 0.0 2.9e-15 56.4 0.0 1.1 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein Zn-ribbon_8 PF09723.5 gi|257388118|ref|YP_003177891.1| - 0.0051 16.7 1.6 0.01 15.7 1.1 1.5 1 0 0 1 1 1 1 Zinc ribbon domain zf-ribbon_3 PF13248.1 gi|257388118|ref|YP_003177891.1| - 0.0056 15.8 0.4 0.47 9.7 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|257388118|ref|YP_003177891.1| - 0.015 14.9 1.4 2.7 7.6 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|257388118|ref|YP_003177891.1| - 0.021 14.4 1.4 3.7 7.3 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Mu-like_Com PF10122.4 gi|257388118|ref|YP_003177891.1| - 0.032 13.3 0.2 0.059 12.4 0.2 1.4 1 0 0 1 1 1 0 Mu-like prophage protein Com zf-HIT PF04438.11 gi|257388118|ref|YP_003177891.1| - 0.079 12.6 4.1 0.71 9.5 0.5 2.1 2 0 0 2 2 2 0 HIT zinc finger zf-ISL3 PF14690.1 gi|257388118|ref|YP_003177891.1| - 0.08 12.9 0.2 11 6.2 0.0 2.2 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 OrfB_Zn_ribbon PF07282.6 gi|257388118|ref|YP_003177891.1| - 0.11 12.1 3.1 3.7 7.2 0.5 2.2 1 1 1 2 2 2 0 Putative transposase DNA-binding domain HypA PF01155.14 gi|257388118|ref|YP_003177891.1| - 0.15 11.7 0.3 0.2 11.3 0.2 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family TF_Zn_Ribbon PF08271.7 gi|257388118|ref|YP_003177891.1| - 0.22 10.8 4.8 1.3 8.3 3.3 2.2 1 1 1 2 2 2 0 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.2 gi|257388118|ref|YP_003177891.1| - 0.44 10.3 3.3 5.6 6.8 0.4 2.2 2 0 0 2 2 2 0 Transposase zinc-ribbon domain Sgf11 PF08209.6 gi|257388118|ref|YP_003177891.1| - 0.83 9.0 3.7 6.1 6.2 0.2 2.5 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Zn_Tnp_IS1 PF03811.8 gi|257388118|ref|YP_003177891.1| - 2.3 7.7 7.9 6.4 6.3 0.1 2.6 3 0 0 3 3 3 0 InsA N-terminal domain zf-H2C2_2 PF13465.1 gi|257388118|ref|YP_003177891.1| - 2.6 8.5 5.3 10 6.6 0.5 2.3 1 1 1 2 2 2 0 Zinc-finger double domain dCMP_cyt_deam_1 PF00383.17 gi|257388119|ref|YP_003177892.1| - 3.3e-12 45.9 0.0 4e-12 45.6 0.0 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region XOO_2897-deam PF14440.1 gi|257388119|ref|YP_003177892.1| - 0.034 13.8 0.0 0.044 13.5 0.0 1.2 1 0 0 1 1 1 0 Xanthomonas XOO_2897-like deaminase DUF3090 PF11290.3 gi|257388119|ref|YP_003177892.1| - 0.11 11.9 0.1 0.14 11.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3090) Hexapep PF00132.19 gi|257388120|ref|YP_003177893.1| - 2.1e-13 49.1 7.7 2.5e-08 33.0 0.3 3.4 2 1 1 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|257388120|ref|YP_003177893.1| - 1.4e-09 37.3 5.4 6.6e-08 31.9 0.7 2.5 2 1 0 2 2 2 2 Hexapeptide repeat of succinyl-transferase SATase_N PF06426.9 gi|257388120|ref|YP_003177893.1| - 0.036 14.3 0.0 0.058 13.6 0.0 1.3 1 0 0 1 1 1 0 Serine acetyltransferase, N-terminal RimK PF08443.6 gi|257388121|ref|YP_003177894.1| - 1.5e-29 102.8 0.0 2.3e-29 102.2 0.0 1.3 1 0 0 1 1 1 1 RimK-like ATP-grasp domain Zn_protease PF05618.6 gi|257388121|ref|YP_003177894.1| - 1.4e-09 37.7 0.2 5.4e-07 29.3 0.0 2.3 1 1 1 2 2 2 2 Putative ATP-dependant zinc protease GSH-S_ATP PF02955.11 gi|257388121|ref|YP_003177894.1| - 1.5e-09 37.2 0.0 2.7e-09 36.4 0.0 1.3 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_4 PF13535.1 gi|257388121|ref|YP_003177894.1| - 1.7e-09 37.6 0.0 3.6e-09 36.6 0.0 1.5 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_3 PF02655.9 gi|257388121|ref|YP_003177894.1| - 1.1e-06 28.6 0.0 2.5e-06 27.4 0.0 1.6 1 1 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|257388121|ref|YP_003177894.1| - 0.00029 19.6 0.0 0.0066 15.2 0.0 2.1 2 0 0 2 2 2 1 ATP-grasp in the biosynthetic pathway with Ter operon Asp_protease_2 PF13650.1 gi|257388121|ref|YP_003177894.1| - 0.0011 19.4 1.4 0.0024 18.3 0.7 1.9 2 0 0 2 2 2 1 Aspartyl protease gag-asp_proteas PF13975.1 gi|257388121|ref|YP_003177894.1| - 0.0096 15.7 0.1 0.03 14.1 0.1 1.9 1 0 0 1 1 1 1 gag-polyprotein putative aspartyl protease RVP PF00077.15 gi|257388121|ref|YP_003177894.1| - 0.13 12.1 0.1 0.24 11.3 0.1 1.4 1 0 0 1 1 1 0 Retroviral aspartyl protease AstE_AspA PF04952.9 gi|257388122|ref|YP_003177895.1| - 3.3e-68 229.7 0.0 3.8e-68 229.5 0.0 1.0 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family Sdh_cyt PF01127.17 gi|257388123|ref|YP_003177896.1| - 5.4e-22 77.8 4.5 6.1e-22 77.7 3.1 1.0 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Ferric_reduct PF01794.14 gi|257388123|ref|YP_003177896.1| - 0.036 14.1 5.9 0.05 13.6 4.1 1.3 1 1 0 1 1 1 0 Ferric reductase like transmembrane component PgaD PF13994.1 gi|257388123|ref|YP_003177896.1| - 0.17 11.3 3.3 0.25 10.8 2.3 1.2 1 0 0 1 1 1 0 PgaD-like protein Ni_hydr_CYTB PF01292.15 gi|257388123|ref|YP_003177896.1| - 8.5 5.7 10.3 32 3.8 7.1 2.0 1 1 0 1 1 1 0 Prokaryotic cytochrome b561 Sdh_cyt PF01127.17 gi|257388124|ref|YP_003177897.1| - 2.7e-11 43.3 8.0 3.5e-11 42.9 5.5 1.1 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DUF1673 PF07895.6 gi|257388124|ref|YP_003177897.1| - 0.036 13.5 0.5 0.046 13.2 0.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1673) DUF2517 PF10725.4 gi|257388124|ref|YP_003177897.1| - 0.15 11.7 0.0 0.15 11.7 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2517) Fer2_3 PF13085.1 gi|257388125|ref|YP_003177898.1| - 9.9e-34 115.4 0.2 5.4e-33 113.1 0.0 2.1 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer4_8 PF13183.1 gi|257388125|ref|YP_003177898.1| - 1.3e-11 44.2 4.4 3.3e-11 43.0 3.0 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|257388125|ref|YP_003177898.1| - 1.9e-06 28.1 3.6 2.5e-06 27.7 0.8 2.5 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|257388125|ref|YP_003177898.1| - 2.4e-06 27.7 1.1 2.4e-06 27.7 0.8 2.2 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|257388125|ref|YP_003177898.1| - 1.6e-05 25.1 4.7 1.6e-05 25.1 3.3 2.0 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|257388125|ref|YP_003177898.1| - 5e-05 23.0 7.0 0.00015 21.4 4.8 1.9 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|257388125|ref|YP_003177898.1| - 0.00046 20.5 12.3 0.011 16.0 0.1 3.1 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|257388125|ref|YP_003177898.1| - 0.0065 17.1 7.7 0.13 12.9 0.5 3.3 3 0 0 3 3 3 1 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|257388125|ref|YP_003177898.1| - 0.012 15.5 1.1 0.012 15.5 0.8 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_20 PF14691.1 gi|257388125|ref|YP_003177898.1| - 0.042 13.4 6.4 0.58 9.8 0.4 2.5 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_6 PF12837.2 gi|257388125|ref|YP_003177898.1| - 0.54 10.2 9.9 0.61 10.0 1.8 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|257388125|ref|YP_003177898.1| - 0.76 10.3 6.4 7.6 7.1 0.2 3.4 3 1 0 3 3 3 0 4Fe-4S single cluster domain Fer4 PF00037.22 gi|257388125|ref|YP_003177898.1| - 1.6 8.4 9.7 5.4 6.7 2.1 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_4 PF12800.2 gi|257388125|ref|YP_003177898.1| - 6.8 7.3 13.0 0.86 10.1 0.9 2.8 3 0 0 3 3 2 0 4Fe-4S binding domain Fer4_21 PF14697.1 gi|257388125|ref|YP_003177898.1| - 9.4 6.1 10.0 1.5e+02 2.3 6.9 2.4 1 1 0 1 1 1 0 4Fe-4S dicluster domain FAD_binding_2 PF00890.19 gi|257388126|ref|YP_003177899.1| - 4.9e-118 394.5 8.8 7e-118 394.0 6.1 1.2 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.15 gi|257388126|ref|YP_003177899.1| - 9.3e-40 135.4 1.6 1.7e-39 134.6 1.1 1.4 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term Pyr_redox_2 PF07992.9 gi|257388126|ref|YP_003177899.1| - 2.2e-06 27.6 12.5 0.0004 20.3 6.7 3.8 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|257388126|ref|YP_003177899.1| - 3.5e-06 26.1 5.9 0.00019 20.4 4.1 2.4 1 1 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|257388126|ref|YP_003177899.1| - 9.7e-05 20.9 1.0 9.7e-05 20.9 0.7 1.9 2 1 0 2 2 2 1 HI0933-like protein GIDA PF01134.17 gi|257388126|ref|YP_003177899.1| - 0.00018 20.5 3.6 0.00043 19.2 2.5 1.6 1 0 0 1 1 1 1 Glucose inhibited division protein A FAD_oxidored PF12831.2 gi|257388126|ref|YP_003177899.1| - 0.00041 19.5 3.9 0.00041 19.5 2.7 2.3 2 0 0 2 2 2 1 FAD dependent oxidoreductase Thi4 PF01946.12 gi|257388126|ref|YP_003177899.1| - 0.0016 17.6 2.2 0.012 14.7 0.2 2.8 3 0 0 3 3 3 1 Thi4 family AlaDh_PNT_C PF01262.16 gi|257388126|ref|YP_003177899.1| - 0.072 12.6 0.1 0.18 11.3 0.0 1.6 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_3 PF01494.14 gi|257388126|ref|YP_003177899.1| - 0.11 11.5 4.2 0.028 13.4 0.6 1.7 2 0 0 2 2 2 0 FAD binding domain Pyr_redox PF00070.22 gi|257388126|ref|YP_003177899.1| - 0.16 12.4 0.9 0.57 10.6 0.6 2.0 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Amidohydro_1 PF01979.15 gi|257388127|ref|YP_003177900.1| - 5e-42 144.7 1.5 6.8e-42 144.3 1.0 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|257388127|ref|YP_003177900.1| - 2.8e-07 30.8 17.0 3.4e-07 30.5 9.0 2.8 2 1 0 2 2 2 1 Amidohydrolase Amidohydro_5 PF13594.1 gi|257388127|ref|YP_003177900.1| - 6.7e-05 22.6 1.4 0.00016 21.4 0.0 2.4 2 1 0 2 2 2 1 Amidohydrolase A_deaminase PF00962.17 gi|257388127|ref|YP_003177900.1| - 0.059 12.2 0.0 0.099 11.5 0.0 1.3 1 0 0 1 1 1 0 Adenosine/AMP deaminase HTH_31 PF13560.1 gi|257388128|ref|YP_003177901.1| - 5.8e-05 23.2 2.3 7.5e-05 22.8 0.4 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_37 PF13744.1 gi|257388128|ref|YP_003177901.1| - 0.0054 16.5 0.1 0.36 10.6 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|257388128|ref|YP_003177901.1| - 0.011 15.5 0.0 0.017 14.9 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix HTH_19 PF12844.2 gi|257388128|ref|YP_003177901.1| - 0.014 15.4 0.0 0.031 14.3 0.0 1.6 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_25 PF13413.1 gi|257388128|ref|YP_003177901.1| - 0.056 13.0 0.0 0.086 12.4 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain RPA_C PF08784.6 gi|257388128|ref|YP_003177901.1| - 0.097 13.0 0.2 0.22 11.9 0.1 1.6 1 1 0 1 1 1 0 Replication protein A C terminal Acyl-CoA_dh_1 PF00441.19 gi|257388129|ref|YP_003177902.1| - 1.8e-49 167.6 3.5 3.3e-49 166.8 2.5 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|257388129|ref|YP_003177902.1| - 4.4e-29 101.3 0.1 1.1e-28 100.1 0.1 1.7 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.6 gi|257388129|ref|YP_003177902.1| - 2.8e-23 82.6 5.8 5.5e-23 81.7 4.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|257388129|ref|YP_003177902.1| - 3.4e-19 68.1 0.0 1.1e-18 66.4 0.0 1.9 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain HpaB_N PF11794.3 gi|257388129|ref|YP_003177902.1| - 0.0038 16.6 0.1 0.035 13.4 0.0 2.1 2 0 0 2 2 2 1 4-hydroxyphenylacetate 3-hydroxylase N terminal HAD_2 PF13419.1 gi|257388130|ref|YP_003177903.1| - 2.8e-16 60.2 0.9 6.4e-15 55.8 0.6 1.9 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.21 gi|257388130|ref|YP_003177903.1| - 6.1e-06 26.7 0.2 0.00082 19.8 0.1 2.5 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|257388130|ref|YP_003177903.1| - 1.6e-05 24.4 0.0 3.3e-05 23.5 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.2 gi|257388130|ref|YP_003177903.1| - 0.00064 19.9 0.1 0.00091 19.4 0.1 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase GpcrRhopsn4 PF10192.4 gi|257388131|ref|YP_003177904.1| - 0.012 14.7 1.1 0.014 14.5 0.8 1.1 1 0 0 1 1 1 0 Rhodopsin-like GPCR transmembrane domain Pantoate_transf PF02548.10 gi|257388132|ref|YP_003177905.1| - 4.8e-93 311.0 0.2 5.4e-93 310.8 0.2 1.0 1 0 0 1 1 1 1 Ketopantoate hydroxymethyltransferase PEP_mutase PF13714.1 gi|257388132|ref|YP_003177905.1| - 9.4e-08 31.5 2.5 4.8e-07 29.2 1.7 2.1 1 1 0 1 1 1 1 Phosphoenolpyruvate phosphomutase Transposase_23 PF03017.9 gi|257388132|ref|YP_003177905.1| - 0.0065 15.9 0.0 0.014 14.9 0.0 1.5 1 0 0 1 1 1 1 TNP1/EN/SPM transposase Amidohydro_2 PF04909.9 gi|257388132|ref|YP_003177905.1| - 0.0097 15.4 0.2 0.015 14.8 0.1 1.4 1 1 0 1 1 1 1 Amidohydrolase Abhydrolase_6 PF12697.2 gi|257388133|ref|YP_003177906.1| - 7.1e-28 98.0 9.0 9.2e-28 97.6 6.3 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|257388133|ref|YP_003177906.1| - 3.5e-17 62.7 0.1 4.1e-15 55.9 0.1 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|257388133|ref|YP_003177906.1| - 3e-15 56.2 5.0 2e-13 50.3 3.5 2.1 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_2 PF02230.11 gi|257388133|ref|YP_003177906.1| - 6.3e-05 22.5 0.0 0.0018 17.7 0.0 2.4 2 1 1 3 3 3 1 Phospholipase/Carboxylesterase Abhydrolase_4 PF08386.5 gi|257388133|ref|YP_003177906.1| - 0.00035 20.4 0.0 0.00086 19.1 0.0 1.6 1 0 0 1 1 1 1 TAP-like protein Hydrolase_4 PF12146.3 gi|257388133|ref|YP_003177906.1| - 0.0045 16.8 0.1 0.017 14.9 0.1 2.0 1 1 0 1 1 1 1 Putative lysophospholipase Thioesterase PF00975.15 gi|257388133|ref|YP_003177906.1| - 0.014 15.6 0.1 0.017 15.3 0.1 1.2 1 0 0 1 1 1 0 Thioesterase domain Esterase PF00756.15 gi|257388133|ref|YP_003177906.1| - 0.029 13.7 0.2 0.053 12.9 0.1 1.4 1 0 0 1 1 1 0 Putative esterase AAA PF00004.24 gi|257388135|ref|YP_003177908.1| - 1.2e-100 332.9 0.0 3.6e-49 166.3 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|257388135|ref|YP_003177908.1| - 2.2e-24 85.1 0.1 2e-23 82.1 0.2 2.5 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), N-terminal domain AAA_2 PF07724.9 gi|257388135|ref|YP_003177908.1| - 1.4e-19 70.6 0.1 5.7e-10 39.3 0.0 2.4 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) RuvB_N PF05496.7 gi|257388135|ref|YP_003177908.1| - 2.1e-16 59.6 0.0 3.2e-08 32.8 0.0 2.6 3 0 0 3 3 2 2 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|257388135|ref|YP_003177908.1| - 3.8e-16 59.6 0.2 1.2e-07 31.8 0.0 3.8 3 1 0 3 3 3 2 AAA ATPase domain CDC48_2 PF02933.12 gi|257388135|ref|YP_003177908.1| - 6.4e-16 57.7 0.7 1.8e-15 56.2 0.2 2.1 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), domain 2 AAA_22 PF13401.1 gi|257388135|ref|YP_003177908.1| - 1.6e-12 47.7 0.1 0.00023 21.2 0.0 3.7 2 2 0 2 2 2 2 AAA domain AAA_14 PF13173.1 gi|257388135|ref|YP_003177908.1| - 2.2e-12 46.9 0.0 4.2e-05 23.4 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_17 PF13207.1 gi|257388135|ref|YP_003177908.1| - 1.1e-11 45.6 0.4 0.00034 21.4 0.0 3.4 2 1 0 2 2 2 2 AAA domain AAA_5 PF07728.9 gi|257388135|ref|YP_003177908.1| - 1.2e-11 44.4 1.1 0.00011 21.9 0.0 4.5 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) TIP49 PF06068.8 gi|257388135|ref|YP_003177908.1| - 4.1e-11 42.2 0.4 5.3e-05 22.1 0.0 3.2 3 0 0 3 3 3 2 TIP49 C-terminus AAA_33 PF13671.1 gi|257388135|ref|YP_003177908.1| - 8.5e-11 41.9 0.0 8.3e-05 22.4 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|257388135|ref|YP_003177908.1| - 5.4e-10 38.8 0.3 0.0018 17.9 0.0 2.9 2 0 0 2 2 2 2 Part of AAA domain Zeta_toxin PF06414.7 gi|257388135|ref|YP_003177908.1| - 5.7e-10 38.6 0.1 0.00079 18.5 0.0 3.1 3 0 0 3 3 3 2 Zeta toxin IstB_IS21 PF01695.12 gi|257388135|ref|YP_003177908.1| - 4.4e-09 36.0 0.0 0.00045 19.6 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein RNA_helicase PF00910.17 gi|257388135|ref|YP_003177908.1| - 2.5e-08 34.0 0.0 0.0069 16.5 0.0 2.6 2 1 0 2 2 2 2 RNA helicase AAA_18 PF13238.1 gi|257388135|ref|YP_003177908.1| - 5.3e-07 29.9 0.0 0.056 13.7 0.0 3.0 3 0 0 3 3 2 2 AAA domain Mg_chelatase PF01078.16 gi|257388135|ref|YP_003177908.1| - 6.4e-07 28.7 0.3 0.025 13.7 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI NACHT PF05729.7 gi|257388135|ref|YP_003177908.1| - 6.4e-07 29.1 0.2 0.23 11.1 0.0 4.1 3 1 1 4 4 4 2 NACHT domain AAA_28 PF13521.1 gi|257388135|ref|YP_003177908.1| - 6.6e-07 29.4 0.0 0.028 14.3 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_3 PF07726.6 gi|257388135|ref|YP_003177908.1| - 8.1e-07 28.7 0.0 0.012 15.2 0.0 2.7 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) DUF815 PF05673.8 gi|257388135|ref|YP_003177908.1| - 1.2e-06 27.6 0.0 0.0044 15.9 0.0 2.8 2 1 0 2 2 2 2 Protein of unknown function (DUF815) KaiC PF06745.8 gi|257388135|ref|YP_003177908.1| - 1.4e-06 27.5 0.6 0.24 10.4 0.0 3.9 3 1 1 4 4 4 2 KaiC AAA_25 PF13481.1 gi|257388135|ref|YP_003177908.1| - 1.8e-06 27.5 7.5 0.54 9.6 0.0 4.4 2 2 1 4 4 4 3 AAA domain Sigma54_activ_2 PF14532.1 gi|257388135|ref|YP_003177908.1| - 2.3e-06 27.6 0.0 0.093 12.7 0.0 3.3 3 0 0 3 3 3 2 Sigma-54 interaction domain NB-ARC PF00931.17 gi|257388135|ref|YP_003177908.1| - 5e-06 25.5 0.0 0.088 11.6 0.0 2.3 2 0 0 2 2 2 2 NB-ARC domain PhoH PF02562.11 gi|257388135|ref|YP_003177908.1| - 5.5e-06 25.7 0.1 0.041 13.0 0.0 2.5 2 0 0 2 2 2 2 PhoH-like protein Sigma54_activat PF00158.21 gi|257388135|ref|YP_003177908.1| - 6.3e-06 25.7 0.1 0.14 11.6 0.0 3.2 2 2 0 2 2 2 2 Sigma-54 interaction domain ABC_tran PF00005.22 gi|257388135|ref|YP_003177908.1| - 8.5e-06 26.1 0.0 0.084 13.1 0.0 2.8 2 0 0 2 2 2 2 ABC transporter AAA_24 PF13479.1 gi|257388135|ref|YP_003177908.1| - 3.1e-05 23.6 0.0 0.045 13.3 0.0 2.6 2 0 0 2 2 2 2 AAA domain Arch_ATPase PF01637.13 gi|257388135|ref|YP_003177908.1| - 3.8e-05 23.4 0.0 0.36 10.4 0.0 3.3 2 1 0 2 2 2 2 Archaeal ATPase UPF0079 PF02367.12 gi|257388135|ref|YP_003177908.1| - 4.2e-05 23.1 0.0 0.36 10.4 0.0 2.4 2 0 0 2 2 2 2 Uncharacterised P-loop hydrolase UPF0079 DUF2075 PF09848.4 gi|257388135|ref|YP_003177908.1| - 4.4e-05 22.6 0.0 0.15 10.9 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) NTPase_1 PF03266.10 gi|257388135|ref|YP_003177908.1| - 6.4e-05 22.7 1.4 0.42 10.3 0.0 3.7 2 2 1 3 3 3 2 NTPase AAA_30 PF13604.1 gi|257388135|ref|YP_003177908.1| - 6.8e-05 22.5 0.0 0.21 11.1 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_11 PF13086.1 gi|257388135|ref|YP_003177908.1| - 8.6e-05 22.2 0.0 0.28 10.7 0.0 2.3 2 0 0 2 2 2 2 AAA domain Parvo_NS1 PF01057.12 gi|257388135|ref|YP_003177908.1| - 0.00021 20.2 0.0 0.31 9.8 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 Bac_DnaA PF00308.13 gi|257388135|ref|YP_003177908.1| - 0.0004 20.0 0.0 0.2 11.2 0.0 2.6 2 0 0 2 2 2 1 Bacterial dnaA protein T2SE PF00437.15 gi|257388135|ref|YP_003177908.1| - 0.00043 19.2 0.0 0.68 8.7 0.0 2.6 2 0 0 2 2 2 2 Type II/IV secretion system protein ATP-synt_ab PF00006.20 gi|257388135|ref|YP_003177908.1| - 0.00071 19.1 0.1 0.16 11.4 0.0 2.5 2 1 0 2 2 2 1 ATP synthase alpha/beta family, nucleotide-binding domain Guanylate_kin PF00625.16 gi|257388135|ref|YP_003177908.1| - 0.0018 17.7 0.9 20 4.5 0.0 4.3 3 1 1 4 4 4 0 Guanylate kinase ResIII PF04851.10 gi|257388135|ref|YP_003177908.1| - 0.0021 17.9 0.0 1.5 8.6 0.0 2.5 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit KAP_NTPase PF07693.9 gi|257388135|ref|YP_003177908.1| - 0.0069 15.4 0.0 5.5 5.8 0.0 3.1 2 1 1 3 3 3 0 KAP family P-loop domain Cytidylate_kin2 PF13189.1 gi|257388135|ref|YP_003177908.1| - 0.022 14.6 0.1 1.2 9.0 0.0 2.7 2 1 0 2 2 2 0 Cytidylate kinase-like family AFG1_ATPase PF03969.11 gi|257388135|ref|YP_003177908.1| - 0.022 13.5 0.0 2.8 6.6 0.0 2.4 2 0 0 2 2 2 0 AFG1-like ATPase SKI PF01202.17 gi|257388135|ref|YP_003177908.1| - 0.023 14.5 0.0 6.3 6.6 0.0 2.5 2 0 0 2 2 2 0 Shikimate kinase Vps4_C PF09336.5 gi|257388135|ref|YP_003177908.1| - 0.024 14.5 0.2 4.9 7.1 0.0 2.9 2 0 0 2 2 2 0 Vps4 C terminal oligomerisation domain KTI12 PF08433.5 gi|257388135|ref|YP_003177908.1| - 0.041 13.0 0.0 7.9 5.5 0.0 2.4 2 0 0 2 2 2 0 Chromatin associated protein KTI12 CPT PF07931.7 gi|257388135|ref|YP_003177908.1| - 0.05 13.2 0.0 8.4 5.9 0.0 2.5 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein Torsin PF06309.6 gi|257388135|ref|YP_003177908.1| - 0.063 13.1 0.0 5 7.0 0.0 2.4 2 0 0 2 2 2 0 Torsin Viral_helicase1 PF01443.13 gi|257388135|ref|YP_003177908.1| - 0.12 11.8 0.0 10 5.5 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase Zot PF05707.7 gi|257388135|ref|YP_003177908.1| - 0.13 11.7 0.3 24 4.3 0.1 3.4 2 1 0 2 2 2 0 Zonular occludens toxin (Zot) DAP3 PF10236.4 gi|257388135|ref|YP_003177908.1| - 0.14 11.0 0.0 8.1 5.2 0.0 2.2 2 0 0 2 2 2 0 Mitochondrial ribosomal death-associated protein 3 DEAD PF00270.24 gi|257388135|ref|YP_003177908.1| - 0.2 11.1 0.9 39 3.6 0.0 3.3 2 2 0 3 3 3 0 DEAD/DEAH box helicase HJURP_C PF12347.3 gi|257388135|ref|YP_003177908.1| - 0.24 11.0 1.4 0.39 10.3 0.1 1.9 2 0 0 2 2 1 0 Holliday junction regulator protein family C-terminal repeat DUF975 PF06161.6 gi|257388137|ref|YP_003177910.1| - 2e-06 27.7 0.8 2e-06 27.7 0.6 2.2 1 1 1 2 2 2 1 Protein of unknown function (DUF975) GPDPase_memb PF10110.4 gi|257388137|ref|YP_003177910.1| - 9.8e-05 21.8 0.2 9.8e-05 21.8 0.1 2.0 3 0 0 3 3 3 1 Membrane domain of glycerophosphoryl diester phosphodiesterase UPF0259 PF06790.6 gi|257388137|ref|YP_003177910.1| - 0.0078 15.6 10.1 0.011 15.2 7.0 1.3 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0259) Form_Nir_trans PF01226.12 gi|257388137|ref|YP_003177910.1| - 2.8 6.7 15.9 0.043 12.7 4.2 2.6 2 2 1 3 3 3 0 Formate/nitrite transporter PHD PF00628.24 gi|257388138|ref|YP_003177911.1| - 0.0076 15.9 4.6 0.0076 15.9 3.2 2.8 2 1 0 2 2 2 1 PHD-finger DnaJ_CXXCXGXG PF00684.14 gi|257388138|ref|YP_003177911.1| - 0.024 14.6 0.1 0.024 14.6 0.1 2.3 2 0 0 2 2 2 0 DnaJ central domain Cytochrome_C554 PF13435.1 gi|257388138|ref|YP_003177911.1| - 0.03 14.3 5.8 0.034 14.1 4.0 1.2 1 0 0 1 1 1 0 Cytochrome c554 and c-prime Cytochrome_C7 PF14522.1 gi|257388138|ref|YP_003177911.1| - 0.094 12.3 9.1 0.42 10.2 6.3 1.9 1 1 0 1 1 1 0 Cytochrome c7 zinc-ribbons_6 PF07191.7 gi|257388138|ref|YP_003177911.1| - 0.28 11.0 9.4 0.2 11.4 0.7 2.4 2 1 0 2 2 2 0 zinc-ribbons DZR PF12773.2 gi|257388138|ref|YP_003177911.1| - 0.43 10.4 12.5 71 3.3 8.7 2.6 1 1 0 1 1 1 0 Double zinc ribbon Cytochrom_c3_2 PF14537.1 gi|257388138|ref|YP_003177911.1| - 0.49 10.7 7.3 1.7 9.0 5.1 1.9 1 1 0 1 1 1 0 Cytochrome c3 zf-MIZ PF02891.15 gi|257388138|ref|YP_003177911.1| - 1.4 8.5 6.4 3 7.4 0.2 2.8 3 0 0 3 3 3 0 MIZ/SP-RING zinc finger DUF1924 PF09086.6 gi|257388138|ref|YP_003177911.1| - 1.6 8.8 4.6 4.4 7.4 0.4 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF1924) Zn-ribbon_8 PF09723.5 gi|257388138|ref|YP_003177911.1| - 3.4 7.6 17.4 7.7 6.5 0.1 4.0 2 2 2 4 4 4 0 Zinc ribbon domain Methyltransf_18 PF12847.2 gi|257388139|ref|YP_003177912.1| - 3.4e-06 27.6 0.0 5.6e-06 26.9 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|257388139|ref|YP_003177912.1| - 1.5e-05 25.3 0.0 2.2e-05 24.8 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|257388139|ref|YP_003177912.1| - 0.003 17.2 0.0 0.0042 16.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain DUF938 PF06080.7 gi|257388139|ref|YP_003177912.1| - 0.0033 16.9 0.0 0.0052 16.3 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF938) Methyltransf_31 PF13847.1 gi|257388139|ref|YP_003177912.1| - 0.0042 16.6 0.0 0.0059 16.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|257388139|ref|YP_003177912.1| - 0.024 15.0 0.1 0.039 14.2 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain TehB PF03848.9 gi|257388139|ref|YP_003177912.1| - 0.043 12.9 0.0 0.066 12.3 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB Methyltransf_12 PF08242.7 gi|257388139|ref|YP_003177912.1| - 0.078 13.4 0.0 0.11 12.9 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain DREV PF05219.7 gi|257388139|ref|YP_003177912.1| - 0.2 10.4 0.0 0.4 9.5 0.0 1.6 1 1 0 1 1 1 0 DREV methyltransferase AhpC-TSA PF00578.16 gi|257388140|ref|YP_003177913.1| - 4.7e-39 132.8 0.0 5.4e-39 132.6 0.0 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|257388140|ref|YP_003177913.1| - 2.5e-26 91.9 0.0 2.8e-26 91.7 0.0 1.0 1 0 0 1 1 1 1 Redoxin YbjN PF10722.4 gi|257388140|ref|YP_003177913.1| - 0.0076 16.2 0.2 0.15 12.0 0.0 2.1 2 0 0 2 2 2 1 Putative bacterial sensory transduction regulator DUF899 PF05988.7 gi|257388140|ref|YP_003177913.1| - 0.008 15.6 0.0 0.0089 15.4 0.0 1.1 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF899) DUF420 PF04238.7 gi|257388141|ref|YP_003177914.1| - 2.3e-33 114.9 5.8 2.3e-33 114.9 4.0 1.3 2 0 0 2 2 2 1 Protein of unknown function (DUF420) DUF2306 PF10067.4 gi|257388141|ref|YP_003177914.1| - 0.00012 22.1 2.0 0.00012 22.1 1.4 2.7 3 1 0 3 3 3 1 Predicted membrane protein (DUF2306) Cytochrom_B561 PF03188.11 gi|257388141|ref|YP_003177914.1| - 0.1 12.4 6.7 0.28 11.0 0.8 2.4 2 1 1 3 3 3 0 Eukaryotic cytochrome b561 Ni_hydr_CYTB PF01292.15 gi|257388141|ref|YP_003177914.1| - 0.5 9.7 7.3 1.2 8.4 5.0 2.0 1 1 0 1 1 1 0 Prokaryotic cytochrome b561 GATase_6 PF13522.1 gi|257388142|ref|YP_003177915.1| - 3e-21 75.7 0.0 1.5e-20 73.5 0.0 2.1 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_7 PF13537.1 gi|257388142|ref|YP_003177915.1| - 2.5e-20 72.4 0.0 9.7e-20 70.5 0.0 2.0 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_2 PF00310.16 gi|257388142|ref|YP_003177915.1| - 3.6e-19 68.7 0.0 8.9e-13 47.6 0.0 3.1 1 1 1 2 2 2 2 Glutamine amidotransferases class-II Pribosyltran PF00156.22 gi|257388142|ref|YP_003177915.1| - 3.1e-13 49.5 0.1 8.7e-13 48.0 0.1 1.7 1 0 0 1 1 1 1 Phosphoribosyl transferase domain GATase_4 PF13230.1 gi|257388142|ref|YP_003177915.1| - 0.00063 18.5 0.0 0.0011 17.7 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferases class-II Ribosomal_L37e PF01907.14 gi|257388143|ref|YP_003177916.1| - 4.5e-25 87.2 12.9 4.8e-25 87.1 9.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e DZR PF12773.2 gi|257388143|ref|YP_003177916.1| - 0.0011 18.7 3.5 0.0014 18.3 2.4 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-RanBP PF00641.13 gi|257388143|ref|YP_003177916.1| - 0.0013 17.8 0.9 0.58 9.3 0.0 2.2 2 0 0 2 2 2 2 Zn-finger in Ran binding protein and others zf-ribbon_3 PF13248.1 gi|257388143|ref|YP_003177916.1| - 0.0068 15.5 3.2 1.2 8.4 0.2 2.2 2 0 0 2 2 2 2 zinc-ribbon domain DUF2616 PF11077.3 gi|257388143|ref|YP_003177916.1| - 0.028 13.9 0.3 0.031 13.7 0.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2616) Baculo_ME53 PF06061.6 gi|257388143|ref|YP_003177916.1| - 0.039 12.9 3.5 0.039 12.9 2.4 1.0 1 0 0 1 1 1 0 Baculoviridae ME53 HypA PF01155.14 gi|257388143|ref|YP_003177916.1| - 0.11 12.1 2.1 0.12 12.0 1.5 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family C1_3 PF07649.7 gi|257388143|ref|YP_003177916.1| - 0.15 12.1 2.3 8.6 6.5 0.1 2.2 2 0 0 2 2 2 0 C1-like domain FYVE_2 PF02318.11 gi|257388143|ref|YP_003177916.1| - 0.19 11.6 3.1 0.21 11.4 2.2 1.1 1 0 0 1 1 1 0 FYVE-type zinc finger DUF1258 PF06869.7 gi|257388143|ref|YP_003177916.1| - 0.31 10.1 2.6 0.37 9.8 1.8 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1258) OrfB_Zn_ribbon PF07282.6 gi|257388143|ref|YP_003177916.1| - 0.41 10.3 6.7 0.58 9.8 4.7 1.4 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zf-piccolo PF05715.8 gi|257388143|ref|YP_003177916.1| - 0.42 10.6 6.5 5.4 7.1 4.5 2.0 1 1 0 1 1 1 0 Piccolo Zn-finger zf-C3HC4 PF00097.20 gi|257388143|ref|YP_003177916.1| - 0.49 10.1 3.9 0.6 9.8 2.7 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zinc_ribbon_2 PF13240.1 gi|257388143|ref|YP_003177916.1| - 0.66 9.5 5.8 3.5 7.2 4.0 2.0 1 1 1 2 2 2 0 zinc-ribbon domain GFA PF04828.9 gi|257388143|ref|YP_003177916.1| - 0.86 9.5 5.8 1 9.3 2.0 1.9 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme zf-C2H2_3 PF13878.1 gi|257388143|ref|YP_003177916.1| - 2.3 7.8 9.8 4.7 6.8 1.4 2.2 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO RNA_POL_M_15KD PF02150.11 gi|257388143|ref|YP_003177916.1| - 4.2 7.1 5.5 4.2 7.1 0.4 2.1 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit zf-dskA_traR PF01258.12 gi|257388143|ref|YP_003177916.1| - 5.1 6.9 6.5 41 4.0 0.3 2.2 1 1 0 1 1 1 0 Prokaryotic dksA/traR C4-type zinc finger LSM PF01423.17 gi|257388144|ref|YP_003177917.1| - 5.5e-15 54.6 0.2 8.1e-15 54.1 0.1 1.3 1 1 0 1 1 1 1 LSM domain SM-ATX PF14438.1 gi|257388144|ref|YP_003177917.1| - 5.8e-05 22.9 0.5 0.0011 18.8 0.1 2.0 1 1 1 2 2 2 1 Ataxin 2 SM domain Peptidase_M42 PF05343.9 gi|257388145|ref|YP_003177918.1| - 3.6e-84 281.9 1.3 4.1e-84 281.7 0.9 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.23 gi|257388145|ref|YP_003177918.1| - 4.2e-13 49.2 0.3 6.4e-13 48.6 0.2 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M18 PF02127.10 gi|257388145|ref|YP_003177918.1| - 4.5e-08 32.0 0.0 0.00046 18.8 0.0 2.2 2 0 0 2 2 2 2 Aminopeptidase I zinc metalloprotease (M18) DUF4245 PF14030.1 gi|257388145|ref|YP_003177918.1| - 0.029 14.1 0.9 0.11 12.1 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4245) DUF4235 PF14019.1 gi|257388146|ref|YP_003177919.1| - 0.047 13.5 0.0 0.058 13.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4235) DUF2342 PF10103.4 gi|257388149|ref|YP_003177922.1| - 1.2e-87 294.0 3.6 5.4e-48 163.7 0.2 2.0 1 1 1 2 2 2 2 Uncharacterised conserved protein (DUF2342) UPF0104 PF03706.8 gi|257388151|ref|YP_003177924.1| - 0.034 13.4 6.8 0.039 13.2 4.7 1.0 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0104) DUF3040 PF11239.3 gi|257388151|ref|YP_003177924.1| - 0.24 11.4 1.2 0.34 11.0 0.8 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) DUF4229 PF14012.1 gi|257388151|ref|YP_003177924.1| - 0.6 10.0 5.1 0.87 9.5 3.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4229) DUF4129 PF13559.1 gi|257388153|ref|YP_003177926.1| - 6.3e-09 35.6 7.3 6.3e-09 35.6 5.1 3.2 3 0 0 3 3 3 1 Domain of unknown function (DUF4129) DUF4198 PF10670.4 gi|257388153|ref|YP_003177926.1| - 2.5e-05 24.3 1.3 0.028 14.4 0.0 3.3 3 0 0 3 3 3 1 Domain of unknown function (DUF4198) BiPBP_C PF06832.7 gi|257388153|ref|YP_003177926.1| - 0.0063 16.4 0.6 0.1 12.5 0.1 2.6 1 1 1 2 2 2 1 Penicillin-Binding Protein C-terminus Family CarboxypepD_reg PF13620.1 gi|257388153|ref|YP_003177926.1| - 0.0087 16.1 4.5 0.11 12.5 0.1 3.4 2 1 1 3 3 3 1 Carboxypeptidase regulatory-like domain PEGA PF08308.6 gi|257388153|ref|YP_003177926.1| - 0.15 11.8 1.7 1.1 9.0 0.0 3.0 3 1 0 3 3 3 0 PEGA domain DUF58 PF01882.13 gi|257388155|ref|YP_003177928.1| - 3.2e-19 68.8 0.7 7e-19 67.7 0.5 1.6 1 0 0 1 1 1 1 Protein of unknown function DUF58 DUF11 PF01345.13 gi|257388155|ref|YP_003177928.1| - 6.9e-06 26.0 1.0 2.5e-05 24.2 0.7 2.0 1 0 0 1 1 1 1 Domain of unknown function DUF11 NPCBM_assoc PF10633.4 gi|257388155|ref|YP_003177928.1| - 0.00075 19.5 0.6 0.0024 17.8 0.1 2.1 2 0 0 2 2 2 1 NPCBM-associated, NEW3 domain of alpha-galactosidase TRAP_beta PF05753.9 gi|257388155|ref|YP_003177928.1| - 0.027 13.6 0.0 0.042 13.0 0.0 1.2 1 0 0 1 1 1 0 Translocon-associated protein beta (TRAPB) Alpha_adaptinC2 PF02883.15 gi|257388155|ref|YP_003177928.1| - 0.19 12.0 0.0 0.34 11.2 0.0 1.3 1 0 0 1 1 1 0 Adaptin C-terminal domain SPC12 PF06645.8 gi|257388156|ref|YP_003177929.1| - 0.17 11.7 5.1 0.19 11.5 0.3 3.5 2 1 1 3 3 3 0 Microsomal signal peptidase 12 kDa subunit (SPC12) AAA_3 PF07726.6 gi|257388157|ref|YP_003177930.1| - 9.8e-65 216.0 0.0 1.7e-64 215.3 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|257388157|ref|YP_003177930.1| - 1.7e-16 60.1 0.0 3.2e-16 59.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|257388157|ref|YP_003177930.1| - 7.9e-08 32.5 0.0 6.2e-06 26.4 0.0 2.4 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.21 gi|257388157|ref|YP_003177930.1| - 1.3e-06 28.0 0.0 1.3e-05 24.7 0.0 2.2 1 1 0 1 1 1 1 Sigma-54 interaction domain MCM PF00493.18 gi|257388157|ref|YP_003177930.1| - 4.4e-06 25.7 0.1 0.00027 19.8 0.0 2.2 2 0 0 2 2 2 1 MCM2/3/5 family RuvB_N PF05496.7 gi|257388157|ref|YP_003177930.1| - 6.8e-05 22.0 0.0 0.0012 17.9 0.0 2.4 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus Mg_chelatase PF01078.16 gi|257388157|ref|YP_003177930.1| - 0.0047 16.1 0.1 3.1 6.9 0.0 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_2 PF07724.9 gi|257388157|ref|YP_003177930.1| - 0.02 14.8 0.0 0.056 13.3 0.0 1.8 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) AAA_19 PF13245.1 gi|257388157|ref|YP_003177930.1| - 0.028 14.1 0.1 0.1 12.3 0.1 2.0 1 0 0 1 1 1 0 Part of AAA domain AAA_17 PF13207.1 gi|257388157|ref|YP_003177930.1| - 0.052 14.3 0.0 0.22 12.3 0.0 2.0 2 1 0 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|257388157|ref|YP_003177930.1| - 0.12 12.6 0.0 0.23 11.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_12 PF13087.1 gi|257388158|ref|YP_003177931.1| - 3.2e-41 140.9 0.0 4.8e-41 140.3 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_11 PF13086.1 gi|257388158|ref|YP_003177931.1| - 4.1e-39 134.5 0.1 2.2e-20 73.2 0.2 3.2 3 0 0 3 3 3 2 AAA domain Dna2 PF08696.6 gi|257388158|ref|YP_003177931.1| - 2.9e-36 124.7 0.0 1.1e-35 122.8 0.0 1.9 1 1 0 1 1 1 1 DNA replication factor Dna2 AAA_30 PF13604.1 gi|257388158|ref|YP_003177931.1| - 2.8e-19 69.4 0.2 2.8e-19 69.4 0.2 3.0 3 2 0 3 3 3 1 AAA domain PDDEXK_1 PF12705.2 gi|257388158|ref|YP_003177931.1| - 1.4e-14 54.1 1.5 2.1e-14 53.5 0.0 1.9 2 0 0 2 2 2 1 PD-(D/E)XK nuclease superfamily AAA_19 PF13245.1 gi|257388158|ref|YP_003177931.1| - 4.6e-14 51.9 1.7 8.7e-13 47.8 0.1 2.8 2 0 0 2 2 2 1 Part of AAA domain Viral_helicase1 PF01443.13 gi|257388158|ref|YP_003177931.1| - 3.3e-08 33.3 0.0 0.012 15.1 0.0 3.2 3 0 0 3 3 3 3 Viral (Superfamily 1) RNA helicase UvrD-helicase PF00580.16 gi|257388158|ref|YP_003177931.1| - 4.3e-06 26.2 0.0 6.8e-06 25.5 0.0 1.3 1 0 0 1 1 1 1 UvrD/REP helicase N-terminal domain DUF2075 PF09848.4 gi|257388158|ref|YP_003177931.1| - 4.5e-05 22.5 0.1 0.00011 21.2 0.0 1.7 2 0 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) AAA_16 PF13191.1 gi|257388158|ref|YP_003177931.1| - 0.00014 21.8 1.6 0.00039 20.4 0.2 2.5 2 1 1 3 3 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|257388158|ref|YP_003177931.1| - 0.00022 21.3 0.0 0.0012 19.0 0.0 2.2 1 1 0 1 1 1 1 AAA domain UvrD_C_2 PF13538.1 gi|257388158|ref|YP_003177931.1| - 0.00025 21.1 0.0 0.00077 19.5 0.0 1.9 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain ResIII PF04851.10 gi|257388158|ref|YP_003177931.1| - 0.00078 19.3 0.0 0.0017 18.1 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_RecD PF05127.9 gi|257388158|ref|YP_003177931.1| - 0.0015 18.1 0.1 0.0092 15.6 0.0 2.1 2 0 0 2 2 2 1 Helicase PIF1 PF05970.9 gi|257388158|ref|YP_003177931.1| - 0.0031 16.5 0.0 0.11 11.3 0.0 2.2 2 0 0 2 2 2 1 PIF1-like helicase IstB_IS21 PF01695.12 gi|257388158|ref|YP_003177931.1| - 0.0032 16.8 0.0 0.042 13.2 0.0 2.3 2 0 0 2 2 2 1 IstB-like ATP binding protein SRP54 PF00448.17 gi|257388158|ref|YP_003177931.1| - 0.0048 16.3 0.0 0.38 10.1 0.0 2.3 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain CbiA PF01656.18 gi|257388158|ref|YP_003177931.1| - 0.0059 16.0 0.3 0.022 14.1 0.2 1.9 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA PF00004.24 gi|257388158|ref|YP_003177931.1| - 0.01 16.0 0.0 0.022 14.9 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_10 PF12846.2 gi|257388158|ref|YP_003177931.1| - 0.019 14.4 0.0 0.069 12.5 0.0 1.9 2 0 0 2 2 2 0 AAA-like domain AAA_33 PF13671.1 gi|257388158|ref|YP_003177931.1| - 0.022 14.6 1.0 0.41 10.5 0.0 2.9 3 0 0 3 3 2 0 AAA domain T2SE PF00437.15 gi|257388158|ref|YP_003177931.1| - 0.031 13.1 0.0 0.053 12.4 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein TrwB_AAD_bind PF10412.4 gi|257388158|ref|YP_003177931.1| - 0.043 12.4 0.0 0.085 11.4 0.0 1.4 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain Mg_chelatase PF01078.16 gi|257388158|ref|YP_003177931.1| - 0.058 12.5 0.0 0.12 11.4 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI PhoH PF02562.11 gi|257388158|ref|YP_003177931.1| - 0.093 11.9 0.0 0.24 10.6 0.0 1.7 1 0 0 1 1 1 0 PhoH-like protein NACHT PF05729.7 gi|257388158|ref|YP_003177931.1| - 0.11 12.1 0.0 0.23 11.1 0.0 1.5 1 0 0 1 1 1 0 NACHT domain Zn-ribbon_8 PF09723.5 gi|257388159|ref|YP_003177932.1| - 0.0011 18.8 3.8 0.0017 18.2 2.7 1.3 1 0 0 1 1 1 1 Zinc ribbon domain HypA PF01155.14 gi|257388159|ref|YP_003177932.1| - 0.0015 18.2 2.0 0.0015 18.2 1.4 1.0 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family NinG PF05766.7 gi|257388159|ref|YP_003177932.1| - 0.012 15.3 1.6 0.012 15.3 1.1 1.0 1 0 0 1 1 1 0 Bacteriophage Lambda NinG protein zf-UBR PF02207.15 gi|257388159|ref|YP_003177932.1| - 0.02 14.5 1.2 0.022 14.4 0.9 1.1 1 0 0 1 1 1 0 Putative zinc finger in N-recognin (UBR box) zf-H2C2_2 PF13465.1 gi|257388159|ref|YP_003177932.1| - 0.046 14.0 1.9 4.9 7.6 0.3 2.1 2 0 0 2 2 2 0 Zinc-finger double domain Zn_Tnp_IS91 PF14319.1 gi|257388159|ref|YP_003177932.1| - 0.069 12.6 2.0 0.07 12.6 1.4 1.0 1 0 0 1 1 1 0 Transposase zinc-binding domain Ectatomin PF06457.6 gi|257388159|ref|YP_003177932.1| - 0.099 12.3 0.1 0.099 12.3 0.0 1.7 2 0 0 2 2 2 0 Ectatomin Prok-RING_1 PF14446.1 gi|257388159|ref|YP_003177932.1| - 0.15 11.8 2.3 0.21 11.3 1.6 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zf-B_box PF00643.19 gi|257388159|ref|YP_003177932.1| - 0.18 11.7 2.0 3.7 7.5 0.0 2.1 2 0 0 2 2 2 0 B-box zinc finger RPA_interact_C PF14768.1 gi|257388159|ref|YP_003177932.1| - 0.21 11.9 2.4 8.1 6.9 0.8 2.0 2 0 0 2 2 2 0 Replication protein A interacting C-terminal CpXC PF14353.1 gi|257388159|ref|YP_003177932.1| - 0.23 11.4 0.0 0.23 11.4 0.0 1.9 1 1 1 2 2 2 0 CpXC protein DUF1451 PF07295.6 gi|257388159|ref|YP_003177932.1| - 0.24 11.1 2.3 0.26 11.0 1.6 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1451) DNA_RNApol_7kD PF03604.8 gi|257388159|ref|YP_003177932.1| - 0.25 10.8 5.0 0.39 10.2 3.5 1.4 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit zf-C2H2_3 PF13878.1 gi|257388159|ref|YP_003177932.1| - 0.28 10.7 3.7 5.2 6.7 0.3 2.1 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO zf-C2H2_6 PF13912.1 gi|257388159|ref|YP_003177932.1| - 0.35 10.8 0.7 0.35 10.8 0.5 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger Tnp_zf-ribbon_2 PF13842.1 gi|257388159|ref|YP_003177932.1| - 0.42 11.0 6.7 6.4 7.2 4.2 2.1 1 1 1 2 2 2 0 DDE_Tnp_1-like zinc-ribbon DZR PF12773.2 gi|257388159|ref|YP_003177932.1| - 0.45 10.3 3.9 0.74 9.6 2.7 1.4 1 1 0 1 1 1 0 Double zinc ribbon zf-HIT PF04438.11 gi|257388159|ref|YP_003177932.1| - 0.48 10.1 7.7 1.3 8.7 5.3 1.7 1 1 0 1 1 1 0 HIT zinc finger zf-CSL PF05207.8 gi|257388159|ref|YP_003177932.1| - 2 8.0 5.9 3.6 7.1 4.1 1.4 1 1 0 1 1 1 0 CSL zinc finger RRN7 PF11781.3 gi|257388159|ref|YP_003177932.1| - 2.7 7.5 6.1 3.5 7.2 0.8 2.2 2 0 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 Rubredoxin PF00301.15 gi|257388159|ref|YP_003177932.1| - 3.5 7.5 7.0 2.7e+02 1.5 4.8 2.1 1 1 0 1 1 1 0 Rubredoxin zf-C2H2 PF00096.21 gi|257388159|ref|YP_003177932.1| - 5.4 7.5 6.1 1.8 9.1 0.2 2.1 2 0 0 2 2 2 0 Zinc finger, C2H2 type Zn_Tnp_IS1595 PF12760.2 gi|257388159|ref|YP_003177932.1| - 8.6 6.2 8.1 7.5 6.4 0.7 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain PAP2 PF01569.16 gi|257388160|ref|YP_003177933.1| - 1.5e-18 66.6 6.7 1.5e-18 66.6 4.7 2.3 2 1 1 3 3 3 2 PAP2 superfamily PAP2_3 PF14378.1 gi|257388160|ref|YP_003177933.1| - 0.00016 21.2 5.5 0.00016 21.2 3.8 2.0 1 1 1 2 2 2 1 PAP2 superfamily 7TMR-DISM_7TM PF07695.6 gi|257388160|ref|YP_003177933.1| - 0.0065 16.1 6.9 1.4 8.5 4.8 2.3 1 1 0 1 1 1 1 7TM diverse intracellular signalling PAP2_C PF14360.1 gi|257388160|ref|YP_003177933.1| - 0.64 10.3 3.8 0.91 9.8 0.1 2.5 2 1 0 2 2 2 0 PAP2 superfamily C-terminal bPH_2 PF03703.9 gi|257388161|ref|YP_003177934.1| - 1.4e-42 143.5 0.1 1.8e-19 69.5 0.0 3.2 3 0 0 3 3 3 3 Bacterial PH domain bPH_2 PF03703.9 gi|257388162|ref|YP_003177935.1| - 1.4e-15 57.0 0.2 1.9e-15 56.6 0.1 1.2 1 0 0 1 1 1 1 Bacterial PH domain HupE_UreJ PF04955.7 gi|257388162|ref|YP_003177935.1| - 0.012 14.9 1.3 0.018 14.3 0.9 1.2 1 0 0 1 1 1 0 HupE / UreJ protein Mito_morph_reg PF14972.1 gi|257388162|ref|YP_003177935.1| - 0.084 12.2 0.1 0.12 11.7 0.0 1.2 1 0 0 1 1 1 0 Mitochondrial morphogenesis regulator DEAD_assoc PF08494.6 gi|257388163|ref|YP_003177936.1| - 5.6e-49 166.4 0.6 1e-48 165.5 0.1 1.7 2 0 0 2 2 2 1 DEAD/H associated DEAD PF00270.24 gi|257388163|ref|YP_003177936.1| - 1e-30 106.4 0.0 4.3e-29 101.1 0.0 2.3 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|257388163|ref|YP_003177936.1| - 8.1e-17 60.8 0.1 1.6e-15 56.7 0.0 2.5 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|257388163|ref|YP_003177936.1| - 2.5e-08 33.9 0.0 6.1e-08 32.7 0.0 1.6 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_22 PF13401.1 gi|257388163|ref|YP_003177936.1| - 0.015 15.4 0.0 0.1 12.7 0.0 2.5 2 0 0 2 2 2 0 AAA domain DHDPS PF00701.17 gi|257388164|ref|YP_003177937.1| - 1.5e-61 207.5 0.0 1.8e-61 207.2 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family HTH_20 PF12840.2 gi|257388165|ref|YP_003177938.1| - 4.5e-11 42.3 0.0 7.8e-11 41.6 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|257388165|ref|YP_003177938.1| - 1.1e-07 31.3 0.0 2.6e-07 30.1 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|257388165|ref|YP_003177938.1| - 5.7e-07 28.8 0.0 8.9e-07 28.2 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|257388165|ref|YP_003177938.1| - 0.00013 21.5 0.0 0.00022 20.8 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.1 gi|257388165|ref|YP_003177938.1| - 0.0014 18.8 0.0 0.003 17.8 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF2513 PF10711.4 gi|257388165|ref|YP_003177938.1| - 0.0051 16.8 0.0 0.008 16.2 0.0 1.3 1 0 0 1 1 1 1 Hypothetical protein (DUF2513) Sigma70_r4 PF04545.11 gi|257388165|ref|YP_003177938.1| - 0.016 14.4 0.0 0.031 13.5 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 Sigma70_r3 PF04539.11 gi|257388165|ref|YP_003177938.1| - 0.025 14.4 0.9 0.055 13.3 0.0 2.0 2 0 0 2 2 2 0 Sigma-70 region 3 MarR PF01047.17 gi|257388165|ref|YP_003177938.1| - 0.036 13.7 0.3 0.13 11.9 0.0 1.9 2 0 0 2 2 2 0 MarR family AzlD PF05437.7 gi|257388165|ref|YP_003177938.1| - 0.067 13.1 0.5 0.35 10.8 0.0 2.0 2 0 0 2 2 2 0 Branched-chain amino acid transport protein (AzlD) HTH_45 PF14947.1 gi|257388165|ref|YP_003177938.1| - 0.15 11.8 0.0 0.25 11.1 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix Lactamase_B_2 PF12706.2 gi|257388166|ref|YP_003177939.1| - 1.6e-19 70.2 0.2 2e-19 69.9 0.2 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|257388166|ref|YP_003177939.1| - 3.1e-12 46.5 4.5 4.3e-12 46.1 3.1 1.5 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.1 gi|257388166|ref|YP_003177939.1| - 0.00014 21.6 0.0 0.00033 20.3 0.0 1.5 1 1 0 1 1 1 1 Beta-lactamase superfamily domain HATPase_c PF02518.21 gi|257388167|ref|YP_003177940.1| - 1.4e-17 63.3 0.2 3.1e-17 62.3 0.2 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_3 PF13492.1 gi|257388167|ref|YP_003177940.1| - 1.7e-12 47.5 0.7 3.1e-12 46.7 0.5 1.5 1 0 0 1 1 1 1 GAF domain HATPase_c_2 PF13581.1 gi|257388167|ref|YP_003177940.1| - 1.9e-05 24.4 0.3 6.3e-05 22.7 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain GAF_2 PF13185.1 gi|257388167|ref|YP_003177940.1| - 2e-05 25.1 0.2 4.6e-05 23.9 0.2 1.7 1 0 0 1 1 1 1 GAF domain HisKA PF00512.20 gi|257388167|ref|YP_003177940.1| - 0.0006 19.7 1.7 0.00079 19.3 0.1 2.1 2 1 0 2 2 2 1 His Kinase A (phospho-acceptor) domain GAF PF01590.21 gi|257388167|ref|YP_003177940.1| - 0.00069 19.7 0.5 0.0012 18.9 0.4 1.5 1 0 0 1 1 1 1 GAF domain SPOB_a PF14689.1 gi|257388167|ref|YP_003177940.1| - 0.0012 18.3 0.0 0.0046 16.4 0.0 2.0 2 0 0 2 2 2 1 Sensor_kinase_SpoOB-type, alpha-helical domain HATPase_c_3 PF13589.1 gi|257388167|ref|YP_003177940.1| - 0.012 15.2 0.0 0.023 14.3 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.1 gi|257388167|ref|YP_003177940.1| - 0.013 15.2 0.0 0.04 13.6 0.0 1.9 1 1 0 1 1 1 0 GHKL domain DUF1033 PF06279.6 gi|257388167|ref|YP_003177940.1| - 0.023 14.4 0.0 0.059 13.1 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1033) eRF1_1 PF03463.10 gi|257388168|ref|YP_003177941.1| - 1e-33 115.7 0.2 1.7e-33 115.0 0.1 1.4 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.10 gi|257388168|ref|YP_003177941.1| - 3.1e-23 82.1 0.1 3.1e-23 82.1 0.1 2.2 3 0 0 3 3 3 1 eRF1 domain 3 eRF1_2 PF03464.10 gi|257388168|ref|YP_003177941.1| - 1.6e-19 70.5 0.0 2.9e-19 69.7 0.0 1.5 1 0 0 1 1 1 1 eRF1 domain 2 Pyr_redox PF00070.22 gi|257388169|ref|YP_003177942.1| - 1.7e-11 44.3 5.7 1.5e-09 38.1 0.3 3.1 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|257388169|ref|YP_003177942.1| - 4.8e-10 39.6 2.3 2.3e-08 34.1 1.6 2.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|257388169|ref|YP_003177942.1| - 1.8e-05 24.8 0.5 1 9.3 0.0 3.5 1 1 3 5 5 5 3 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|257388169|ref|YP_003177942.1| - 0.00017 20.6 4.9 0.025 13.4 0.1 3.0 2 1 1 3 3 3 2 FAD dependent oxidoreductase UDPG_MGDP_dh_N PF03721.9 gi|257388169|ref|YP_003177942.1| - 0.00047 19.6 0.1 0.0051 16.2 0.0 2.2 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_9 PF13454.1 gi|257388169|ref|YP_003177942.1| - 0.014 15.1 3.7 1.3 8.7 0.0 3.8 3 1 1 4 4 4 0 FAD-NAD(P)-binding TrkA_N PF02254.13 gi|257388169|ref|YP_003177942.1| - 0.048 13.6 0.1 0.3 11.0 0.0 2.2 2 0 0 2 2 2 0 TrkA-N domain NAD_binding_8 PF13450.1 gi|257388169|ref|YP_003177942.1| - 0.87 9.6 0.0 0.87 9.6 0.0 2.9 3 0 0 3 3 3 0 NAD(P)-binding Rossmann-like domain Acetyltransf_4 PF13420.1 gi|257388172|ref|YP_003177945.1| - 1.5e-13 50.9 0.0 4.8e-13 49.3 0.0 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|257388172|ref|YP_003177945.1| - 1.3e-10 41.1 0.0 2.9e-10 40.0 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|257388172|ref|YP_003177945.1| - 2.8e-08 33.8 0.1 8.4e-08 32.3 0.0 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|257388172|ref|YP_003177945.1| - 1e-05 25.6 0.0 2.2e-05 24.5 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|257388172|ref|YP_003177945.1| - 3.3e-05 24.0 0.0 5.1e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|257388172|ref|YP_003177945.1| - 0.00036 20.3 0.1 0.0012 18.7 0.1 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|257388172|ref|YP_003177945.1| - 0.0023 17.7 0.0 0.0059 16.4 0.0 1.6 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_8 PF13523.1 gi|257388172|ref|YP_003177945.1| - 0.022 14.6 0.0 0.039 13.8 0.0 1.4 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|257388172|ref|YP_003177945.1| - 0.13 12.2 0.6 0.73 9.7 0.4 2.1 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain UBA_4 PF14555.1 gi|257388172|ref|YP_003177945.1| - 0.13 11.8 0.0 0.26 10.8 0.0 1.5 1 0 0 1 1 1 0 UBA-like domain Isochorismatase PF00857.15 gi|257388173|ref|YP_003177946.1| - 6.8e-34 117.3 0.0 7.8e-34 117.1 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family YqcI_YcgG PF08892.6 gi|257388174|ref|YP_003177947.1| - 7.4e-73 244.7 0.0 8.6e-73 244.5 0.0 1.0 1 0 0 1 1 1 1 YqcI/YcgG family GHMP_kinases_N PF00288.21 gi|257388175|ref|YP_003177948.1| - 1e-07 31.8 0.4 2.3e-07 30.7 0.3 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|257388175|ref|YP_003177948.1| - 0.016 15.4 0.0 0.03 14.5 0.0 1.5 1 0 0 1 1 1 0 GHMP kinases C terminal Copper-bind PF00127.15 gi|257388176|ref|YP_003177949.1| - 7.6e-18 64.5 0.1 1.3e-17 63.8 0.0 1.3 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.1 gi|257388176|ref|YP_003177949.1| - 2.4e-05 24.1 0.0 0.0079 16.0 0.0 2.0 2 0 0 2 2 2 2 Cupredoxin-like domain Acetyltransf_9 PF13527.1 gi|257388177|ref|YP_003177950.1| - 3.9e-21 75.2 0.1 2e-20 72.9 0.0 2.0 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|257388177|ref|YP_003177950.1| - 0.0001 22.3 0.0 0.0037 17.3 0.0 2.4 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|257388177|ref|YP_003177950.1| - 0.0012 19.0 0.0 0.066 13.3 0.0 2.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Ribosomal_S3Ae PF01015.13 gi|257388178|ref|YP_003177951.1| - 1.1e-69 233.7 2.8 1.3e-69 233.4 1.9 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family Ribosomal_S15 PF00312.17 gi|257388181|ref|YP_003177954.1| - 5.9e-24 83.6 1.0 9.1e-24 83.0 0.7 1.2 1 0 0 1 1 1 1 Ribosomal protein S15 Ribosomal_S13_N PF08069.7 gi|257388181|ref|YP_003177954.1| - 3.8e-23 81.0 0.0 5.9e-23 80.4 0.0 1.3 1 0 0 1 1 1 1 Ribosomal S13/S15 N-terminal domain DUF2807 PF10988.3 gi|257388182|ref|YP_003177955.1| - 0.0088 15.5 6.9 0.0088 15.5 4.8 2.7 2 0 0 2 2 2 1 Protein of unknown function (DUF2807) DUF4382 PF14321.1 gi|257388182|ref|YP_003177955.1| - 0.012 15.6 0.9 0.034 14.2 0.1 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4382) Bactofilin PF04519.8 gi|257388182|ref|YP_003177955.1| - 0.05 13.6 10.9 0.043 13.8 3.4 3.1 3 0 0 3 3 3 0 Polymer-forming cytoskeletal DUF1628 PF07790.6 gi|257388183|ref|YP_003177956.1| - 0.014 16.0 2.3 0.032 14.9 1.5 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF1628) DUF4402 PF14352.1 gi|257388183|ref|YP_003177956.1| - 0.041 14.3 3.1 0.28 11.6 0.2 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4402) DUF3357 PF11837.3 gi|257388186|ref|YP_003177959.1| - 0.027 14.3 0.2 0.054 13.3 0.1 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3357) TadE PF07811.7 gi|257388187|ref|YP_003177960.1| - 0.62 9.9 5.4 1.6 8.7 3.7 1.7 1 0 0 1 1 1 0 TadE-like protein CARDB PF07705.6 gi|257388188|ref|YP_003177961.1| - 5.7e-23 80.8 41.1 1.2e-06 28.4 0.4 7.8 7 1 0 7 7 7 6 CARDB A2M PF00207.17 gi|257388188|ref|YP_003177961.1| - 5.3e-06 25.9 0.0 0.1 12.1 0.0 4.8 4 0 0 4 4 4 1 Alpha-2-macroglobulin family Transglut_C PF00927.17 gi|257388188|ref|YP_003177961.1| - 4.9e-05 23.3 0.9 3 7.9 0.0 5.3 5 0 0 5 5 5 1 Transglutaminase family, C-terminal ig like domain Fn3-like PF14310.1 gi|257388188|ref|YP_003177961.1| - 0.00049 19.9 8.0 0.43 10.5 0.0 5.5 6 0 0 6 6 6 2 Fibronectin type III-like domain Glyco_hydro_66 PF13199.1 gi|257388188|ref|YP_003177961.1| - 0.0041 15.6 6.9 0.0094 14.4 0.0 3.1 3 0 0 3 3 3 2 Glycosyl hydrolase family 66 E1_DerP2_DerF2 PF02221.10 gi|257388188|ref|YP_003177961.1| - 0.085 13.1 5.5 0.26 11.5 0.1 4.3 4 0 0 4 4 4 0 ML domain DUF2207 PF09972.4 gi|257388188|ref|YP_003177961.1| - 0.24 9.9 8.2 0.25 9.8 0.1 2.8 2 1 0 2 2 2 0 Predicted membrane protein (DUF2207) 4HBT PF03061.17 gi|257388188|ref|YP_003177961.1| - 1 9.5 8.5 6.4 6.9 0.2 4.8 5 0 0 5 5 5 0 Thioesterase superfamily T2SF PF00482.18 gi|257388194|ref|YP_003177967.1| - 5.9e-26 90.8 5.8 2.3e-13 50.1 0.7 3.1 2 0 0 2 2 2 2 Type II secretion system (T2SS), protein F T2SE PF00437.15 gi|257388195|ref|YP_003177968.1| - 1.9e-44 151.5 0.0 3.9e-44 150.5 0.0 1.5 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|257388195|ref|YP_003177968.1| - 6.2e-05 22.4 0.1 0.00014 21.3 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain Aminotran_1_2 PF00155.16 gi|257388196|ref|YP_003177969.1| - 1.3e-69 234.8 0.0 1.5e-69 234.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|257388196|ref|YP_003177969.1| - 1.9e-07 30.5 0.0 2.9e-07 29.9 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.14 gi|257388196|ref|YP_003177969.1| - 0.0062 15.3 0.0 0.0093 14.7 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V OKR_DC_1 PF01276.15 gi|257388196|ref|YP_003177969.1| - 0.063 11.8 0.0 0.32 9.4 0.0 1.9 2 0 0 2 2 2 0 Orn/Lys/Arg decarboxylase, major domain AsnC_trans_reg PF01037.16 gi|257388197|ref|YP_003177970.1| - 1.9e-14 53.0 0.1 3.7e-14 52.1 0.1 1.4 1 0 0 1 1 1 1 AsnC family HTH_24 PF13412.1 gi|257388197|ref|YP_003177970.1| - 4.2e-11 42.0 0.2 1.9e-10 39.9 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|257388197|ref|YP_003177970.1| - 1e-07 31.3 0.8 3.6e-07 29.5 0.1 2.0 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_IclR PF09339.5 gi|257388197|ref|YP_003177970.1| - 2.2e-06 27.1 0.0 4.3e-06 26.2 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|257388197|ref|YP_003177970.1| - 3.2e-06 26.6 0.0 5.6e-06 25.9 0.0 1.4 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|257388197|ref|YP_003177970.1| - 0.00041 20.0 0.0 0.00074 19.1 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_Tnp_ISL3 PF13542.1 gi|257388197|ref|YP_003177970.1| - 0.0047 16.0 0.0 0.014 14.5 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_Crp_2 PF13545.1 gi|257388197|ref|YP_003177970.1| - 0.009 15.7 0.0 0.021 14.6 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain RPA_C PF08784.6 gi|257388197|ref|YP_003177970.1| - 0.0096 16.3 0.0 0.038 14.3 0.0 1.8 2 0 0 2 2 2 1 Replication protein A C terminal TFIIE_alpha PF02002.12 gi|257388197|ref|YP_003177970.1| - 0.011 15.2 0.0 0.019 14.4 0.0 1.3 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_20 PF12840.2 gi|257388197|ref|YP_003177970.1| - 0.011 15.4 0.0 0.046 13.5 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain TrmB PF01978.14 gi|257388197|ref|YP_003177970.1| - 0.013 15.2 0.1 0.023 14.4 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.15 gi|257388197|ref|YP_003177970.1| - 0.02 14.9 0.0 0.064 13.3 0.0 1.8 3 0 0 3 3 3 0 Transcriptional regulator HTH_27 PF13463.1 gi|257388197|ref|YP_003177970.1| - 0.052 13.8 0.0 0.25 11.6 0.0 2.0 3 0 0 3 3 3 0 Winged helix DNA-binding domain HTH_29 PF13551.1 gi|257388197|ref|YP_003177970.1| - 0.063 13.4 0.0 0.13 12.3 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn helix AhpC-TSA PF00578.16 gi|257388199|ref|YP_003177972.1| - 1e-15 57.5 0.0 1.4e-15 57.0 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|257388199|ref|YP_003177972.1| - 3.4e-15 55.8 0.0 4.2e-15 55.5 0.0 1.1 1 0 0 1 1 1 1 Redoxin Thioredoxin_2 PF13098.1 gi|257388199|ref|YP_003177972.1| - 2.1e-05 24.6 0.0 3.3e-05 24.0 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.1 gi|257388199|ref|YP_003177972.1| - 0.0011 18.9 0.0 0.0018 18.3 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin PF00085.15 gi|257388199|ref|YP_003177972.1| - 0.063 12.9 0.0 0.79 9.4 0.0 2.0 1 1 1 2 2 2 0 Thioredoxin DUF2284 PF10050.4 gi|257388199|ref|YP_003177972.1| - 0.11 12.0 0.0 0.17 11.4 0.0 1.2 1 0 0 1 1 1 0 Predicted metal-binding protein (DUF2284) BtpA PF03437.10 gi|257388200|ref|YP_003177973.1| - 3.5e-84 282.0 7.2 3.9e-84 281.8 5.0 1.0 1 0 0 1 1 1 1 BtpA family Trp_syntA PF00290.15 gi|257388200|ref|YP_003177973.1| - 0.0055 15.2 0.3 0.0093 14.5 0.2 1.3 1 0 0 1 1 1 1 Tryptophan synthase alpha chain PcrB PF01884.12 gi|257388200|ref|YP_003177973.1| - 0.014 14.6 0.2 0.014 14.6 0.2 2.4 3 1 1 4 4 4 0 PcrB family MS_channel PF00924.13 gi|257388201|ref|YP_003177974.1| - 3.7e-27 94.9 3.9 3.7e-26 91.7 2.7 2.2 1 1 0 1 1 1 1 Mechanosensitive ion channel VirB3 PF05101.8 gi|257388201|ref|YP_003177974.1| - 5.8 6.9 6.1 4.5 7.3 0.6 2.4 2 0 0 2 2 2 0 Type IV secretory pathway, VirB3-like protein DUF3040 PF11239.3 gi|257388201|ref|YP_003177974.1| - 8.1 6.5 10.6 0.33 11.0 2.5 2.1 1 1 0 2 2 2 0 Protein of unknown function (DUF3040) Methyltransf_3 PF01596.12 gi|257388202|ref|YP_003177975.1| - 5.9e-24 84.2 0.0 7.6e-24 83.9 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_24 PF13578.1 gi|257388202|ref|YP_003177975.1| - 9.6e-16 58.5 0.6 1.9e-15 57.6 0.2 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|257388202|ref|YP_003177975.1| - 3.9e-12 46.7 0.2 6.6e-12 46.0 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|257388202|ref|YP_003177975.1| - 2.5e-10 40.1 0.0 3.2e-10 39.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|257388202|ref|YP_003177975.1| - 5.2e-10 39.3 0.1 1.9e-09 37.5 0.1 1.8 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|257388202|ref|YP_003177975.1| - 1.4e-07 31.0 0.0 2.1e-07 30.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_25 PF13649.1 gi|257388202|ref|YP_003177975.1| - 3.4e-05 24.1 0.0 6.7e-05 23.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.14 gi|257388202|ref|YP_003177975.1| - 0.00012 21.7 0.0 0.00017 21.1 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_12 PF08242.7 gi|257388202|ref|YP_003177975.1| - 0.00012 22.4 0.0 0.00024 21.5 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|257388202|ref|YP_003177975.1| - 0.041 13.5 0.1 0.095 12.4 0.0 1.5 1 1 0 1 1 1 0 Methyltransferase domain Ubie_methyltran PF01209.13 gi|257388202|ref|YP_003177975.1| - 0.069 12.2 0.0 0.097 11.7 0.0 1.2 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family CheC PF04509.7 gi|257388203|ref|YP_003177976.1| - 1.9e-14 53.0 2.0 2.5e-14 52.7 0.3 2.0 2 0 0 2 2 2 1 CheC-like family CheX PF13690.1 gi|257388203|ref|YP_003177976.1| - 0.00012 21.8 0.1 0.00012 21.8 0.1 1.9 2 0 0 2 2 2 1 Chemotaxis phosphatase CheX FliM PF02154.10 gi|257388203|ref|YP_003177976.1| - 0.0027 17.3 0.1 0.0031 17.2 0.1 1.2 1 0 0 1 1 1 1 Flagellar motor switch protein FliM Acyl-CoA_dh_1 PF00441.19 gi|257388204|ref|YP_003177977.1| - 8e-42 142.8 2.9 8e-42 142.8 2.0 1.5 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|257388204|ref|YP_003177977.1| - 6.2e-24 84.7 3.3 6.2e-24 84.7 2.3 2.2 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.14 gi|257388204|ref|YP_003177977.1| - 5.6e-21 73.8 0.7 9.8e-21 73.0 0.2 1.7 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|257388204|ref|YP_003177977.1| - 5.3e-17 62.3 4.3 1e-16 61.3 3.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain RuBisCO_large_N PF02788.11 gi|257388204|ref|YP_003177977.1| - 0.019 14.6 0.0 0.064 12.9 0.0 1.9 1 0 0 1 1 1 0 Ribulose bisphosphate carboxylase large chain, N-terminal domain Big_3_4 PF13754.1 gi|257388205|ref|YP_003177978.1| - 1e-05 25.7 7.6 1e-05 25.7 5.2 10.0 8 3 1 10 10 10 1 Bacterial Ig-like domain (group 3) CARDB PF07705.6 gi|257388205|ref|YP_003177978.1| - 0.0068 16.4 1.6 0.0068 16.4 1.1 3.9 3 0 0 3 3 3 1 CARDB DUF4625 PF15418.1 gi|257388205|ref|YP_003177978.1| - 0.043 13.9 0.1 0.98 9.5 0.0 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4625) DICT PF10069.4 gi|257388206|ref|YP_003177979.1| - 6.1e-25 87.2 0.0 9.2e-25 86.6 0.0 1.3 1 0 0 1 1 1 1 Sensory domain found in DIguanylate Cyclases & Two-component systems POR_N PF01855.14 gi|257388207|ref|YP_003177980.1| - 2.7e-49 167.7 0.3 8.6e-49 166.1 0.2 1.8 1 1 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.13 gi|257388207|ref|YP_003177980.1| - 5.7e-46 156.5 0.0 2.5e-45 154.4 0.0 2.0 2 0 0 2 2 2 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_N PF02776.13 gi|257388207|ref|YP_003177980.1| - 0.00075 19.0 0.1 0.0016 17.9 0.1 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CinA PF02464.12 gi|257388207|ref|YP_003177980.1| - 0.14 11.6 0.2 1.3 8.4 0.1 2.2 2 0 0 2 2 2 0 Competence-damaged protein TPP_enzyme_C PF02775.16 gi|257388208|ref|YP_003177981.1| - 5.2e-34 117.0 0.1 7.9e-34 116.4 0.1 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.3 gi|257388208|ref|YP_003177981.1| - 0.12 12.3 0.3 0.31 10.9 0.2 1.8 1 0 0 1 1 1 0 Pyruvate ferredoxin oxidoreductase beta subunit C terminal DUF2487 PF10673.4 gi|257388208|ref|YP_003177981.1| - 0.14 11.9 0.0 0.24 11.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2487) HTH_24 PF13412.1 gi|257388209|ref|YP_003177982.1| - 1.7e-15 56.1 0.0 2.7e-15 55.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|257388209|ref|YP_003177982.1| - 6.2e-10 38.4 0.1 1e-09 37.7 0.1 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.16 gi|257388209|ref|YP_003177982.1| - 4.2e-09 35.9 0.0 6.6e-09 35.3 0.0 1.3 1 0 0 1 1 1 1 AsnC family HTH_20 PF12840.2 gi|257388209|ref|YP_003177982.1| - 2.5e-08 33.6 0.0 5.3e-08 32.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.7 gi|257388209|ref|YP_003177982.1| - 2e-07 30.5 0.0 4e-07 29.5 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_5 PF01022.15 gi|257388209|ref|YP_003177982.1| - 9.4e-07 28.4 0.0 1.7e-06 27.5 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.14 gi|257388209|ref|YP_003177982.1| - 1.1e-06 28.4 0.1 2.2e-06 27.4 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.2 gi|257388209|ref|YP_003177982.1| - 3.3e-06 26.6 0.0 1.9e-05 24.2 0.0 2.0 2 0 0 2 2 2 1 MarR family HTH_DeoR PF08220.7 gi|257388209|ref|YP_003177982.1| - 3.7e-06 26.3 0.0 7.2e-06 25.4 0.0 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_36 PF13730.1 gi|257388209|ref|YP_003177982.1| - 4.9e-06 26.5 0.0 8.1e-06 25.8 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|257388209|ref|YP_003177982.1| - 5.4e-06 25.8 0.0 1.1e-05 24.9 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.17 gi|257388209|ref|YP_003177982.1| - 2.2e-05 24.0 0.0 3.7e-05 23.3 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_23 PF13384.1 gi|257388209|ref|YP_003177982.1| - 3.4e-05 23.3 0.0 5.6e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain TrmB PF01978.14 gi|257388209|ref|YP_003177982.1| - 4.7e-05 23.0 0.1 8.3e-05 22.2 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.15 gi|257388209|ref|YP_003177982.1| - 8.1e-05 22.6 0.0 0.00033 20.7 0.0 1.8 1 1 1 2 2 2 1 Transcriptional regulator HTH_28 PF13518.1 gi|257388209|ref|YP_003177982.1| - 0.00071 19.5 0.0 0.0011 18.8 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain GntR PF00392.16 gi|257388209|ref|YP_003177982.1| - 0.00088 18.6 0.1 0.0027 17.0 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family LacI PF00356.16 gi|257388209|ref|YP_003177982.1| - 0.0011 18.5 0.0 0.0029 17.1 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, lacI family Sigma70_r4_2 PF08281.7 gi|257388209|ref|YP_003177982.1| - 0.0026 17.1 0.0 0.0056 16.1 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_34 PF13601.1 gi|257388209|ref|YP_003177982.1| - 0.0027 17.7 0.0 0.0049 16.8 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_29 PF13551.1 gi|257388209|ref|YP_003177982.1| - 0.0035 17.4 0.0 0.0044 17.1 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn helix FaeA PF04703.7 gi|257388209|ref|YP_003177982.1| - 0.0038 17.3 0.0 0.0061 16.6 0.0 1.3 1 0 0 1 1 1 1 FaeA-like protein TFIIE_alpha PF02002.12 gi|257388209|ref|YP_003177982.1| - 0.0045 16.4 0.1 0.0092 15.4 0.0 1.5 2 0 0 2 2 1 1 TFIIE alpha subunit HTH_10 PF04967.7 gi|257388209|ref|YP_003177982.1| - 0.009 15.5 0.0 0.018 14.5 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain HTH_27 PF13463.1 gi|257388209|ref|YP_003177982.1| - 0.01 16.1 0.0 0.017 15.4 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|257388209|ref|YP_003177982.1| - 0.014 15.1 0.0 0.024 14.4 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix TetR_N PF00440.18 gi|257388209|ref|YP_003177982.1| - 0.017 14.7 0.0 0.034 13.7 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_6 PF01418.12 gi|257388209|ref|YP_003177982.1| - 0.022 14.4 0.0 0.044 13.5 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family Sigma70_r4 PF04545.11 gi|257388209|ref|YP_003177982.1| - 0.037 13.3 0.0 0.059 12.6 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 Sigma70_r3 PF04539.11 gi|257388209|ref|YP_003177982.1| - 0.038 13.8 0.5 2.5 8.0 0.0 2.4 2 0 0 2 2 2 0 Sigma-70 region 3 HTH_3 PF01381.17 gi|257388209|ref|YP_003177982.1| - 0.046 13.5 0.0 0.078 12.8 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix HTH_38 PF13936.1 gi|257388209|ref|YP_003177982.1| - 0.047 13.2 0.0 0.11 12.0 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2250 PF10007.4 gi|257388209|ref|YP_003177982.1| - 0.056 13.3 0.0 0.084 12.7 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) EAP30 PF04157.11 gi|257388209|ref|YP_003177982.1| - 0.067 12.3 0.0 0.091 11.9 0.0 1.2 1 0 0 1 1 1 0 EAP30/Vps36 family RPA_C PF08784.6 gi|257388209|ref|YP_003177982.1| - 0.082 13.3 0.0 0.23 11.8 0.0 1.7 2 0 0 2 2 1 0 Replication protein A C terminal DUF2513 PF10711.4 gi|257388209|ref|YP_003177982.1| - 0.088 12.8 0.0 0.14 12.2 0.0 1.2 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) HTH_17 PF12728.2 gi|257388209|ref|YP_003177982.1| - 0.098 12.9 0.0 0.15 12.3 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Mga PF08280.6 gi|257388209|ref|YP_003177982.1| - 0.11 12.2 0.0 0.17 11.6 0.0 1.3 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain DUF2913 PF11140.3 gi|257388209|ref|YP_003177982.1| - 0.11 11.7 0.0 0.16 11.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2913) HTH_1 PF00126.22 gi|257388209|ref|YP_003177982.1| - 0.12 12.1 0.0 0.24 11.1 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family SLH PF00395.15 gi|257388209|ref|YP_003177982.1| - 0.13 11.9 0.2 0.39 10.5 0.0 1.9 2 0 0 2 2 1 0 S-layer homology domain UPF0122 PF04297.9 gi|257388209|ref|YP_003177982.1| - 0.14 12.2 0.1 0.22 11.5 0.0 1.3 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like DHHA1 PF02272.14 gi|257388210|ref|YP_003177983.1| - 3.8e-13 48.9 0.3 1.3e-12 47.2 0.2 2.0 1 0 0 1 1 1 1 DHHA1 domain DHH PF01368.15 gi|257388210|ref|YP_003177983.1| - 5.2e-13 48.8 0.0 9.4e-13 48.0 0.0 1.4 1 0 0 1 1 1 1 DHH family TrkA_N PF02254.13 gi|257388210|ref|YP_003177983.1| - 1.7e-09 37.6 0.1 5e-09 36.1 0.1 1.8 1 0 0 1 1 1 1 TrkA-N domain ApbA PF02558.11 gi|257388210|ref|YP_003177983.1| - 0.092 12.1 0.0 0.2 11.0 0.0 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA adh_short PF00106.20 gi|257388210|ref|YP_003177983.1| - 0.24 11.3 4.9 0.14 12.0 1.6 2.0 2 0 0 2 2 2 0 short chain dehydrogenase CBS PF00571.23 gi|257388211|ref|YP_003177984.1| - 1.4e-25 88.8 1.6 3.2e-13 49.2 0.0 2.7 2 0 0 2 2 2 2 CBS domain ParBc PF02195.13 gi|257388211|ref|YP_003177984.1| - 6.5e-05 22.9 0.1 0.0011 19.0 0.0 2.6 1 1 0 1 1 1 1 ParB-like nuclease domain DUF1015 PF06245.6 gi|257388211|ref|YP_003177984.1| - 0.0017 16.9 0.1 0.0026 16.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1015) ParBc_2 PF08857.6 gi|257388211|ref|YP_003177984.1| - 0.0078 16.0 0.1 0.054 13.3 0.1 2.1 1 1 0 1 1 1 1 Putative ParB-like nuclease MM_CoA_mutase PF01642.17 gi|257388212|ref|YP_003177985.1| - 1.4e-189 630.5 1.8 1.7e-189 630.3 1.3 1.0 1 0 0 1 1 1 1 Methylmalonyl-CoA mutase DUF4013 PF13197.1 gi|257388213|ref|YP_003177986.1| - 0.0043 16.4 28.8 0.0043 16.4 20.0 3.1 1 1 1 3 3 3 2 Protein of unknown function (DUF4013) Glug PF07581.7 gi|257388213|ref|YP_003177986.1| - 0.62 10.3 3.7 8.5 6.8 0.0 3.4 3 0 0 3 3 3 0 The GLUG motif DUF975 PF06161.6 gi|257388213|ref|YP_003177986.1| - 0.93 9.1 21.8 0.023 14.4 7.3 2.0 1 1 0 2 2 2 0 Protein of unknown function (DUF975) AMP-binding PF00501.23 gi|257388214|ref|YP_003177987.1| - 1.3e-79 267.5 0.0 1.6e-79 267.2 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|257388214|ref|YP_003177987.1| - 1e-13 52.0 0.7 1.9e-13 51.1 0.5 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain Inhibitor_I34 PF10466.4 gi|257388214|ref|YP_003177987.1| - 0.046 13.7 0.0 0.13 12.3 0.0 1.7 1 0 0 1 1 1 0 Saccharopepsin inhibitor I34 FtsX PF02687.16 gi|257388215|ref|YP_003177988.1| - 0.061 13.0 2.9 0.079 12.7 2.0 1.2 1 0 0 1 1 1 0 FtsX-like permease family DUF485 PF04341.7 gi|257388215|ref|YP_003177988.1| - 0.078 12.6 4.3 0.19 11.4 3.0 1.6 1 1 0 1 1 1 0 Protein of unknown function, DUF485 PspC PF04024.7 gi|257388215|ref|YP_003177988.1| - 0.099 12.1 0.5 0.099 12.1 0.3 1.9 2 0 0 2 2 2 0 PspC domain Yip1 PF04893.12 gi|257388215|ref|YP_003177988.1| - 0.16 11.4 3.3 0.2 11.1 2.3 1.1 1 0 0 1 1 1 0 Yip1 domain DUF1049 PF06305.6 gi|257388215|ref|YP_003177988.1| - 3.2 7.2 8.0 0.23 10.9 0.9 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1049) ATP1G1_PLM_MAT8 PF02038.11 gi|257388216|ref|YP_003177989.1| - 0.29 10.1 3.8 0.37 9.8 2.6 1.4 1 1 0 1 1 1 0 ATP1G1/PLM/MAT8 family PepSY_TM PF03929.11 gi|257388216|ref|YP_003177989.1| - 5.7 7.5 6.1 9.4 6.8 3.9 1.6 1 1 0 1 1 1 0 PepSY-associated TM helix COX1 PF00115.15 gi|257388217|ref|YP_003177990.1| - 2.3e-158 527.5 58.5 2.3e-158 527.5 40.6 1.7 2 0 0 2 2 2 1 Cytochrome C and Quinol oxidase polypeptide I DUF4229 PF14012.1 gi|257388218|ref|YP_003177991.1| - 0.02 14.7 0.2 0.025 14.4 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4229) VIT1 PF01988.14 gi|257388218|ref|YP_003177991.1| - 0.25 10.7 2.4 0.3 10.5 1.6 1.0 1 0 0 1 1 1 0 VIT family Cyt_c_ox_IV PF12270.3 gi|257388219|ref|YP_003177992.1| - 0.023 14.4 1.1 0.023 14.4 0.8 2.5 2 1 1 3 3 3 0 Cytochrome c oxidase subunit IV DUF3040 PF11239.3 gi|257388219|ref|YP_003177992.1| - 2.3 8.3 17.8 1 9.4 1.3 3.0 2 1 0 2 2 2 0 Protein of unknown function (DUF3040) TctB PF07331.6 gi|257388219|ref|YP_003177992.1| - 2.5 7.7 15.3 1.2 8.8 9.1 1.5 1 1 0 1 1 1 0 Tripartite tricarboxylate transporter TctB family DUF4131 PF13567.1 gi|257388219|ref|YP_003177992.1| - 9.2 5.6 11.0 0.16 11.3 1.6 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) CENP-F_leu_zip PF10473.4 gi|257388220|ref|YP_003177993.1| - 8.3e-06 25.7 6.9 1.5e-05 24.8 4.8 1.3 1 0 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 V-SNARE PF05008.10 gi|257388220|ref|YP_003177993.1| - 0.00016 21.7 6.5 0.00037 20.5 4.5 1.6 1 0 0 1 1 1 1 Vesicle transport v-SNARE protein N-terminus DUF972 PF06156.8 gi|257388220|ref|YP_003177993.1| - 0.00055 20.2 4.3 0.0094 16.2 3.3 2.3 2 0 0 2 2 2 1 Protein of unknown function (DUF972) IncA PF04156.9 gi|257388220|ref|YP_003177993.1| - 0.00066 19.3 11.2 0.0011 18.5 7.7 1.3 1 0 0 1 1 1 1 IncA protein Cortex-I_coil PF09304.5 gi|257388220|ref|YP_003177993.1| - 0.001 19.1 7.2 0.002 18.1 5.0 1.4 1 0 0 1 1 1 1 Cortexillin I, coiled coil APG6 PF04111.7 gi|257388220|ref|YP_003177993.1| - 0.0012 17.9 8.9 0.0018 17.3 6.2 1.2 1 0 0 1 1 1 1 Autophagy protein Apg6 bZIP_1 PF00170.16 gi|257388220|ref|YP_003177993.1| - 0.0013 18.6 9.5 0.024 14.5 3.7 2.4 2 0 0 2 2 2 1 bZIP transcription factor TMF_TATA_bd PF12325.3 gi|257388220|ref|YP_003177993.1| - 0.0018 18.0 7.6 0.0039 16.9 5.3 1.5 1 0 0 1 1 1 1 TATA element modulatory factor 1 TATA binding TBPIP PF07106.8 gi|257388220|ref|YP_003177993.1| - 0.0047 16.4 5.5 0.0087 15.6 3.8 1.3 1 0 0 1 1 1 1 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) DUF3450 PF11932.3 gi|257388220|ref|YP_003177993.1| - 0.012 14.9 7.6 0.019 14.2 5.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) DUF641 PF04859.7 gi|257388220|ref|YP_003177993.1| - 0.018 14.7 1.8 0.038 13.7 1.2 1.4 1 0 0 1 1 1 0 Plant protein of unknown function (DUF641) TPR_MLP1_2 PF07926.7 gi|257388220|ref|YP_003177993.1| - 0.024 14.4 8.3 0.045 13.5 5.8 1.4 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein GAS PF13851.1 gi|257388220|ref|YP_003177993.1| - 0.029 13.5 4.7 0.047 12.8 3.3 1.2 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding Cluap1 PF10234.4 gi|257388220|ref|YP_003177993.1| - 0.029 13.5 6.2 0.048 12.8 4.3 1.2 1 0 0 1 1 1 0 Clusterin-associated protein-1 DUF1978 PF09321.5 gi|257388220|ref|YP_003177993.1| - 0.045 13.1 8.5 0.082 12.3 5.9 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1978) EzrA PF06160.7 gi|257388220|ref|YP_003177993.1| - 0.052 11.7 4.9 0.074 11.2 3.4 1.1 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA DUF4071 PF13281.1 gi|257388220|ref|YP_003177993.1| - 0.054 12.3 2.9 0.14 10.9 1.8 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4071) DUF4200 PF13863.1 gi|257388220|ref|YP_003177993.1| - 0.056 13.3 8.8 0.11 12.4 6.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4200) Cep57_CLD_2 PF14197.1 gi|257388220|ref|YP_003177993.1| - 0.058 13.3 12.9 0.12 12.3 8.9 1.5 1 0 0 1 1 1 0 Centrosome localisation domain of PPC89 Fmp27_WPPW PF10359.4 gi|257388220|ref|YP_003177993.1| - 0.063 11.6 3.7 0.11 10.8 2.5 1.3 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain V_ATPase_I PF01496.14 gi|257388220|ref|YP_003177993.1| - 0.1 10.4 4.3 0.14 9.9 3.0 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family WEMBL PF05701.6 gi|257388220|ref|YP_003177993.1| - 0.11 10.9 11.7 0.16 10.3 8.1 1.1 1 0 0 1 1 1 0 Weak chloroplast movement under blue light Bacillus_HBL PF05791.6 gi|257388220|ref|YP_003177993.1| - 0.11 11.7 2.2 0.19 11.0 1.5 1.2 1 0 0 1 1 1 0 Bacillus haemolytic enterotoxin (HBL) Laminin_II PF06009.7 gi|257388220|ref|YP_003177993.1| - 0.13 12.0 2.3 0.24 11.1 1.6 1.3 1 0 0 1 1 1 0 Laminin Domain II Reo_sigmaC PF04582.7 gi|257388220|ref|YP_003177993.1| - 0.14 11.3 0.4 0.2 10.7 0.3 1.2 1 0 0 1 1 1 0 Reovirus sigma C capsid protein Mnd1 PF03962.10 gi|257388220|ref|YP_003177993.1| - 0.16 11.6 7.7 0.37 10.4 5.3 1.6 1 0 0 1 1 1 0 Mnd1 family AAA_23 PF13476.1 gi|257388220|ref|YP_003177993.1| - 0.16 12.3 5.4 0.28 11.4 3.7 1.4 1 0 0 1 1 1 0 AAA domain GrpE PF01025.14 gi|257388220|ref|YP_003177993.1| - 0.16 11.5 6.4 0.35 10.4 4.4 1.5 1 0 0 1 1 1 0 GrpE Seryl_tRNA_N PF02403.17 gi|257388220|ref|YP_003177993.1| - 0.21 11.6 5.8 0.47 10.4 4.0 1.5 1 0 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain DUF4164 PF13747.1 gi|257388220|ref|YP_003177993.1| - 0.29 11.3 12.6 0.77 9.9 8.8 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4164) DUF1664 PF07889.7 gi|257388220|ref|YP_003177993.1| - 0.29 10.9 4.0 0.48 10.2 2.8 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) DivIC PF04977.10 gi|257388220|ref|YP_003177993.1| - 0.32 10.5 14.4 0.28 10.6 2.9 2.3 1 1 1 2 2 2 0 Septum formation initiator DUF812 PF05667.6 gi|257388220|ref|YP_003177993.1| - 0.37 9.2 9.7 0.62 8.5 6.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF812) HALZ PF02183.13 gi|257388220|ref|YP_003177993.1| - 0.44 10.3 5.6 0.83 9.4 3.9 1.4 1 0 0 1 1 1 0 Homeobox associated leucine zipper AAA_13 PF13166.1 gi|257388220|ref|YP_003177993.1| - 0.51 8.7 3.2 0.77 8.1 2.2 1.1 1 0 0 1 1 1 0 AAA domain DUF342 PF03961.8 gi|257388220|ref|YP_003177993.1| - 0.56 8.5 2.6 0.86 7.9 1.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF342) Prominin PF05478.6 gi|257388220|ref|YP_003177993.1| - 0.56 7.6 0.5 0.8 7.1 0.3 1.1 1 0 0 1 1 1 0 Prominin Tmemb_cc2 PF10267.4 gi|257388220|ref|YP_003177993.1| - 0.7 8.4 6.5 1.3 7.5 4.5 1.4 1 0 0 1 1 1 0 Predicted transmembrane and coiled-coil 2 protein DUF3584 PF12128.3 gi|257388220|ref|YP_003177993.1| - 0.73 7.0 13.1 1 6.5 9.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) DUF948 PF06103.6 gi|257388220|ref|YP_003177993.1| - 1.1 9.1 2.3 2.2 8.2 1.6 1.3 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF948) Atg14 PF10186.4 gi|257388220|ref|YP_003177993.1| - 1.4 7.7 4.7 2.3 7.0 3.3 1.2 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 Bap31 PF05529.7 gi|257388220|ref|YP_003177993.1| - 1.6 8.1 5.7 2.5 7.5 4.0 1.3 1 0 0 1 1 1 0 B-cell receptor-associated protein 31-like FlaC_arch PF05377.6 gi|257388220|ref|YP_003177993.1| - 2.3 8.1 5.8 13 5.7 4.0 2.1 1 1 0 1 1 1 0 Flagella accessory protein C (FlaC) OmpH PF03938.9 gi|257388220|ref|YP_003177993.1| - 3.4 7.5 9.8 6.9 6.5 6.8 1.5 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) Spc24 PF08286.6 gi|257388220|ref|YP_003177993.1| - 3.7 7.2 10.1 6.9 6.4 5.8 2.2 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 DUF1843 PF08898.5 gi|257388220|ref|YP_003177993.1| - 4.5 7.3 10.5 45 4.1 7.3 2.5 1 1 0 1 1 1 0 Domain of unknown function (DUF1843) Prefoldin PF02996.12 gi|257388220|ref|YP_003177993.1| - 4.6 6.9 8.2 2.5 7.7 2.2 2.1 1 1 0 1 1 1 0 Prefoldin subunit DUF4140 PF13600.1 gi|257388220|ref|YP_003177993.1| - 9 6.8 14.9 5.1 7.6 4.4 2.9 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) HTH_24 PF13412.1 gi|257388221|ref|YP_003177994.1| - 0.00022 20.5 0.0 0.00036 19.8 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_12 PF08461.5 gi|257388221|ref|YP_003177994.1| - 0.0028 17.3 0.0 0.0051 16.5 0.0 1.6 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain Phage_rep_org_N PF09681.5 gi|257388221|ref|YP_003177994.1| - 0.013 15.0 0.1 0.015 14.8 0.1 1.2 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) TrmB PF01978.14 gi|257388221|ref|YP_003177994.1| - 0.015 14.9 0.1 0.058 13.1 0.0 1.7 1 1 1 2 2 2 0 Sugar-specific transcriptional regulator TrmB Ribosomal_S19e PF01090.14 gi|257388221|ref|YP_003177994.1| - 0.02 14.3 0.0 0.13 11.6 0.0 1.9 1 1 0 1 1 1 0 Ribosomal protein S19e MotA_activ PF09114.5 gi|257388221|ref|YP_003177994.1| - 0.027 14.2 0.0 0.044 13.5 0.0 1.4 1 1 0 1 1 1 0 Transcription factor MotA, activation domain HTH_15 PF12324.3 gi|257388221|ref|YP_003177994.1| - 0.049 13.3 0.1 0.4 10.3 0.0 1.9 1 1 1 2 2 2 0 Helix-turn-helix domain of alkylmercury lyase HTH_5 PF01022.15 gi|257388221|ref|YP_003177994.1| - 0.06 13.0 0.2 0.18 11.4 0.1 1.8 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|257388221|ref|YP_003177994.1| - 0.062 13.1 0.2 0.15 11.9 0.1 1.8 1 1 0 1 1 1 0 Helix-turn-helix domain DUF2513 PF10711.4 gi|257388221|ref|YP_003177994.1| - 0.08 13.0 0.0 0.091 12.8 0.0 1.2 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) Adenylsucc_synt PF00709.16 gi|257388222|ref|YP_003177995.1| - 5.4e-140 466.7 0.0 7.7e-140 466.2 0.0 1.2 1 0 0 1 1 1 1 Adenylosuccinate synthetase Trm112p PF03966.11 gi|257388223|ref|YP_003177996.1| - 2.6e-09 37.3 1.4 6.2e-09 36.0 0.9 1.6 1 1 0 1 1 1 1 Trm112p-like protein A2L_zn_ribbon PF08792.5 gi|257388223|ref|YP_003177996.1| - 0.045 13.2 0.0 0.076 12.4 0.0 1.5 1 0 0 1 1 1 0 A2L zinc ribbon domain FA_desaturase PF00487.19 gi|257388224|ref|YP_003177997.1| - 0.063 12.7 1.7 0.092 12.1 1.2 1.2 1 0 0 1 1 1 0 Fatty acid desaturase CbiX PF01903.12 gi|257388226|ref|YP_003177999.1| - 1.3e-38 131.2 0.1 1.3e-19 70.2 0.0 2.1 2 0 0 2 2 2 2 CbiX CbiK PF06180.6 gi|257388226|ref|YP_003177999.1| - 5.6e-07 28.9 0.1 0.00043 19.4 0.1 2.1 1 1 0 2 2 2 2 Cobalt chelatase (CbiK) Senescence PF06911.7 gi|257388227|ref|YP_003178000.1| - 0.19 11.3 1.2 0.3 10.7 0.7 1.3 1 1 0 1 1 1 0 Senescence-associated protein tRNA-synt_1e PF01406.14 gi|257388228|ref|YP_003178001.1| - 5.3e-105 350.8 0.2 1.7e-103 345.8 0.1 2.2 1 1 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain DALR_2 PF09190.6 gi|257388228|ref|YP_003178001.1| - 3.7e-13 49.5 0.0 8.8e-13 48.3 0.0 1.6 1 0 0 1 1 1 1 DALR domain tRNA-synt_1g PF09334.6 gi|257388228|ref|YP_003178001.1| - 1.6e-12 46.7 0.1 9.2e-06 24.5 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1f PF01921.13 gi|257388228|ref|YP_003178001.1| - 1.4e-06 27.2 0.0 0.0021 16.7 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1 PF00133.17 gi|257388228|ref|YP_003178001.1| - 1.9e-06 26.2 0.4 3.1e-06 25.5 0.0 1.5 2 0 0 2 2 2 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1c PF00749.16 gi|257388228|ref|YP_003178001.1| - 0.0029 16.3 0.0 0.0058 15.3 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain UVR PF02151.14 gi|257388228|ref|YP_003178001.1| - 0.013 14.9 0.1 0.067 12.7 0.0 2.2 2 0 0 2 2 2 0 UvrB/uvrC motif tRNA-synt_1d PF00750.14 gi|257388228|ref|YP_003178001.1| - 0.055 12.2 0.7 1.7 7.4 0.0 2.5 2 1 0 3 3 3 0 tRNA synthetases class I (R) GHMP_kinases_C PF08544.8 gi|257388228|ref|YP_003178001.1| - 0.057 13.6 1.8 3.6 7.8 0.9 2.9 2 1 0 2 2 2 0 GHMP kinases C terminal CorA PF01544.13 gi|257388229|ref|YP_003178002.1| - 5.2e-74 248.8 0.0 6e-74 248.7 0.0 1.0 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein TctA PF01970.11 gi|257388230|ref|YP_003178003.1| - 2.2e-53 181.2 50.6 2.6e-53 180.9 35.1 1.1 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family MoeZ_MoeB PF05237.8 gi|257388230|ref|YP_003178003.1| - 2.4 7.8 4.1 1.6 8.3 0.5 2.4 2 0 0 2 2 2 0 MoeZ/MoeB domain Ribosomal_60s PF00428.14 gi|257388231|ref|YP_003178004.1| - 4.1e-11 43.1 36.7 2e-10 40.9 25.5 1.8 1 1 0 1 1 1 1 60s Acidic ribosomal protein NOA36 PF06524.7 gi|257388231|ref|YP_003178004.1| - 5.8 6.0 6.1 6.6 5.9 4.2 1.1 1 0 0 1 1 1 0 NOA36 protein CENP-T PF15511.1 gi|257388231|ref|YP_003178004.1| - 8.7 5.4 8.8 9.1 5.4 6.1 1.1 1 0 0 1 1 1 0 Centromere kinetochore component CENP-T Ribosomal_L10 PF00466.15 gi|257388232|ref|YP_003178005.1| - 4.9e-21 74.5 0.0 1e-20 73.5 0.0 1.5 1 0 0 1 1 1 1 Ribosomal protein L10 BUD22 PF09073.5 gi|257388232|ref|YP_003178005.1| - 0.71 8.8 8.2 0.95 8.4 5.7 1.1 1 0 0 1 1 1 0 BUD22 Cwf_Cwc_15 PF04889.7 gi|257388232|ref|YP_003178005.1| - 2 8.0 12.7 3 7.5 8.8 1.3 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein TFIIA PF03153.8 gi|257388232|ref|YP_003178005.1| - 3.4 7.4 14.6 4.8 6.9 10.1 1.2 1 0 0 1 1 1 0 Transcription factor IIA, alpha/beta subunit CDC45 PF02724.9 gi|257388232|ref|YP_003178005.1| - 4.2 5.2 11.8 5.4 4.9 8.2 1.1 1 0 0 1 1 1 0 CDC45-like protein Ribosomal_L1 PF00687.16 gi|257388233|ref|YP_003178006.1| - 4.4e-42 143.9 0.0 5.2e-42 143.6 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family Ribosomal_L11 PF00298.14 gi|257388234|ref|YP_003178007.1| - 3.6e-20 71.8 0.0 5.3e-20 71.3 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain Ribosomal_L11_N PF03946.9 gi|257388234|ref|YP_003178007.1| - 1e-19 69.7 0.1 1.8e-19 68.9 0.1 1.4 1 0 0 1 1 1 1 Ribosomal protein L11, N-terminal domain FbpA PF05833.6 gi|257388236|ref|YP_003178009.1| - 4.9e-92 308.8 1.2 6.4e-92 308.4 0.8 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) DUF814 PF05670.8 gi|257388236|ref|YP_003178009.1| - 7.7e-26 89.8 0.0 1.3e-25 89.1 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF814) FliJ PF02050.11 gi|257388236|ref|YP_003178009.1| - 0.056 13.5 9.2 1.1 9.3 0.3 2.4 2 0 0 2 2 2 0 Flagellar FliJ protein Mnd1 PF03962.10 gi|257388236|ref|YP_003178009.1| - 6.7 6.3 10.3 12 5.4 0.3 2.3 2 0 0 2 2 2 0 Mnd1 family NAD_binding_8 PF13450.1 gi|257388237|ref|YP_003178010.1| - 9.1e-17 60.8 0.7 2e-16 59.7 0.5 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Amino_oxidase PF01593.19 gi|257388237|ref|YP_003178010.1| - 1.6e-16 60.4 5.5 7.2e-09 35.2 0.9 2.0 1 1 0 2 2 2 2 Flavin containing amine oxidoreductase DAO PF01266.19 gi|257388237|ref|YP_003178010.1| - 3.6e-13 49.1 6.9 5.5e-08 32.1 0.6 2.7 1 1 1 3 3 3 2 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|257388237|ref|YP_003178010.1| - 5.5e-09 36.3 0.3 1.9e-08 34.6 0.2 1.8 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|257388237|ref|YP_003178010.1| - 1.1e-07 31.8 1.1 4e-07 29.9 0.2 2.2 2 1 0 2 2 2 1 FAD-NAD(P)-binding Pyr_redox_2 PF07992.9 gi|257388237|ref|YP_003178010.1| - 3.7e-07 30.2 0.0 1.3e-06 28.4 0.0 2.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|257388237|ref|YP_003178010.1| - 6.2e-06 25.3 2.5 7.6e-06 25.0 0.8 1.8 2 0 0 2 2 2 1 FAD binding domain FAD_oxidored PF12831.2 gi|257388237|ref|YP_003178010.1| - 5.1e-05 22.5 1.1 8.4e-05 21.8 0.7 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox PF00070.22 gi|257388237|ref|YP_003178010.1| - 0.0003 21.1 0.5 0.0033 17.8 0.2 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|257388237|ref|YP_003178010.1| - 0.0013 17.2 1.3 0.0025 16.3 0.9 1.4 1 0 0 1 1 1 1 HI0933-like protein Thi4 PF01946.12 gi|257388237|ref|YP_003178010.1| - 0.003 16.6 0.3 0.0045 16.1 0.2 1.2 1 0 0 1 1 1 1 Thi4 family FAD_binding_3 PF01494.14 gi|257388237|ref|YP_003178010.1| - 0.0038 16.3 0.8 0.038 13.0 0.1 2.2 2 0 0 2 2 2 1 FAD binding domain GIDA PF01134.17 gi|257388237|ref|YP_003178010.1| - 0.004 16.0 1.1 0.012 14.4 0.6 1.9 2 0 0 2 2 2 1 Glucose inhibited division protein A IlvN PF07991.7 gi|257388237|ref|YP_003178010.1| - 0.014 14.7 0.0 0.021 14.1 0.0 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain ApbA PF02558.11 gi|257388237|ref|YP_003178010.1| - 0.016 14.6 0.0 0.06 12.7 0.1 2.0 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.13 gi|257388237|ref|YP_003178010.1| - 0.023 14.3 0.1 0.037 13.6 0.1 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|257388237|ref|YP_003178010.1| - 0.051 13.8 0.1 0.1 12.8 0.1 1.5 1 1 0 1 1 1 0 Putative NAD(P)-binding AlaDh_PNT_C PF01262.16 gi|257388237|ref|YP_003178010.1| - 0.072 12.6 0.4 0.2 11.1 0.1 1.8 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Shikimate_DH PF01488.15 gi|257388237|ref|YP_003178010.1| - 0.079 13.0 0.1 0.13 12.3 0.0 1.3 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|257388237|ref|YP_003178010.1| - 0.089 12.5 0.1 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Lactamase_B PF00753.22 gi|257388238|ref|YP_003178011.1| - 2.4e-19 69.7 3.4 2.8e-19 69.5 2.3 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|257388238|ref|YP_003178011.1| - 0.00023 20.7 0.0 0.00026 20.6 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Radical_SAM PF04055.16 gi|257388239|ref|YP_003178012.1| - 1.4e-22 80.6 0.0 7.1e-22 78.3 0.0 2.2 2 0 0 2 2 2 1 Radical SAM superfamily Acetyltransf_1 PF00583.19 gi|257388239|ref|YP_003178012.1| - 1.5e-07 31.3 0.0 4e-07 29.9 0.0 1.8 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Peptidase_C39_2 PF13529.1 gi|257388239|ref|YP_003178012.1| - 0.13 12.5 0.0 0.41 11.0 0.0 1.8 2 0 0 2 2 2 0 Peptidase_C39 like family Cupin_2 PF07883.6 gi|257388240|ref|YP_003178013.1| - 2.9e-13 49.1 0.1 4.9e-13 48.3 0.1 1.4 1 0 0 1 1 1 1 Cupin domain Cupin_3 PF05899.7 gi|257388240|ref|YP_003178013.1| - 1.4e-05 24.3 0.0 3.5e-05 23.1 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF861) Cupin_6 PF12852.2 gi|257388240|ref|YP_003178013.1| - 8.8e-05 22.1 0.0 9.4e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 Cupin AraC_binding PF02311.14 gi|257388240|ref|YP_003178013.1| - 0.1 12.2 0.0 0.16 11.6 0.0 1.2 1 0 0 1 1 1 0 AraC-like ligand binding domain Bax1-I PF01027.15 gi|257388241|ref|YP_003178014.1| - 0.058 13.0 0.9 0.13 11.8 0.6 1.6 1 1 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 DUF998 PF06197.8 gi|257388241|ref|YP_003178014.1| - 1.4 8.1 10.4 2.4 7.4 7.2 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF998) DUF202 PF02656.10 gi|257388241|ref|YP_003178014.1| - 1.6 8.9 6.4 12 6.2 4.4 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF202) PMT_2 PF13231.1 gi|257388241|ref|YP_003178014.1| - 2.1 8.2 5.7 0.68 9.8 1.6 1.7 1 1 1 2 2 2 0 Dolichyl-phosphate-mannose-protein mannosyltransferase tRNA_anti-codon PF01336.20 gi|257388242|ref|YP_003178015.1| - 3.6e-11 42.7 0.5 1.1e-10 41.2 0.2 1.9 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain S1 PF00575.18 gi|257388242|ref|YP_003178015.1| - 3.3e-08 33.4 0.0 1.1e-07 31.7 0.0 1.9 1 0 0 1 1 1 1 S1 RNA binding domain PTPS PF01242.14 gi|257388242|ref|YP_003178015.1| - 0.016 14.9 0.1 2.3 7.9 0.0 2.8 2 0 0 2 2 2 0 6-pyruvoyl tetrahydropterin synthase tRNA_anti_2 PF13742.1 gi|257388242|ref|YP_003178015.1| - 0.055 13.3 0.0 0.14 12.0 0.0 1.6 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain SIS PF01380.17 gi|257388242|ref|YP_003178015.1| - 0.1 12.2 0.0 0.2 11.2 0.0 1.5 1 0 0 1 1 1 0 SIS domain FLO_LFY PF01698.11 gi|257388242|ref|YP_003178015.1| - 0.92 8.2 5.7 1.6 7.5 3.9 1.3 1 0 0 1 1 1 0 Floricaula / Leafy protein Macoilin PF09726.4 gi|257388242|ref|YP_003178015.1| - 1.7 6.8 2.8 1 7.5 0.8 1.4 2 0 0 2 2 2 0 Transmembrane protein Yip1 PF04893.12 gi|257388244|ref|YP_003178017.1| - 8.8e-10 38.3 9.9 1.4e-09 37.7 6.9 1.3 1 1 0 1 1 1 1 Yip1 domain FMN_red PF03358.10 gi|257388246|ref|YP_003178019.1| - 3.2e-33 114.3 0.0 3.8e-33 114.1 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.12 gi|257388246|ref|YP_003178019.1| - 2.4e-08 33.7 0.0 3.3e-08 33.2 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.2 gi|257388246|ref|YP_003178019.1| - 0.16 11.9 0.0 0.51 10.3 0.0 1.8 1 1 1 2 2 2 0 Flavodoxin domain HhH-GPD PF00730.20 gi|257388248|ref|YP_003178021.1| - 1.1e-15 57.7 0.0 1.9e-15 57.0 0.0 1.3 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|257388248|ref|YP_003178021.1| - 1.7e-07 30.5 0.0 3.9e-07 29.3 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif TrmB PF01978.14 gi|257388250|ref|YP_003178023.1| - 2.6e-18 65.4 0.2 4.7e-18 64.6 0.2 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB E2F_TDP PF02319.15 gi|257388250|ref|YP_003178023.1| - 0.037 13.5 0.0 0.091 12.3 0.0 1.6 1 0 0 1 1 1 0 E2F/DP family winged-helix DNA-binding domain HTH_IclR PF09339.5 gi|257388250|ref|YP_003178023.1| - 0.05 13.1 0.2 0.12 12.0 0.1 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_9 PF08221.6 gi|257388250|ref|YP_003178023.1| - 0.096 12.5 0.0 0.29 11.0 0.0 1.8 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_20 PF12840.2 gi|257388251|ref|YP_003178024.1| - 4.8e-14 51.9 0.0 8.6e-14 51.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.2 gi|257388251|ref|YP_003178024.1| - 1.4e-05 24.7 0.0 3.4e-05 23.4 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|257388251|ref|YP_003178024.1| - 0.00068 18.9 0.0 0.0012 18.1 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|257388251|ref|YP_003178024.1| - 0.0016 18.1 0.0 0.0041 16.7 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|257388251|ref|YP_003178024.1| - 0.034 13.7 0.0 0.069 12.8 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_34 PF13601.1 gi|257388251|ref|YP_003178024.1| - 0.095 12.7 0.0 0.19 11.7 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain Multi_Drug_Res PF00893.14 gi|257388252|ref|YP_003178025.1| - 1e-26 93.2 1.2 1.3e-26 92.9 0.8 1.1 1 0 0 1 1 1 1 Small Multidrug Resistance protein EmrE PF13536.1 gi|257388252|ref|YP_003178025.1| - 2.3e-07 31.0 5.5 2.6e-07 30.8 3.8 1.1 1 0 0 1 1 1 1 Multidrug resistance efflux transporter EamA PF00892.15 gi|257388252|ref|YP_003178025.1| - 0.007 16.4 5.2 0.0083 16.1 3.6 1.3 1 1 0 1 1 1 1 EamA-like transporter family TPT PF03151.11 gi|257388252|ref|YP_003178025.1| - 0.0083 15.7 1.6 0.0099 15.5 1.1 1.5 1 1 0 1 1 1 1 Triose-phosphate Transporter family DUF4233 PF14017.1 gi|257388252|ref|YP_003178025.1| - 0.14 12.1 6.8 0.37 10.7 4.7 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF4233) DUF981 PF06168.6 gi|257388252|ref|YP_003178025.1| - 0.41 10.3 4.8 0.96 9.1 3.3 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF981) DAO PF01266.19 gi|257388253|ref|YP_003178026.1| - 7.5e-12 44.8 1.1 3.3e-05 22.9 0.1 2.3 1 1 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|257388253|ref|YP_003178026.1| - 6e-09 35.2 0.2 2.8e-08 33.0 0.1 2.0 2 0 0 2 2 2 1 FAD binding domain Trp_halogenase PF04820.9 gi|257388253|ref|YP_003178026.1| - 6e-08 31.7 0.2 0.001 17.7 0.0 2.7 2 1 1 3 3 3 2 Tryptophan halogenase Lycopene_cycl PF05834.7 gi|257388253|ref|YP_003178026.1| - 1.5e-07 30.7 0.0 1e-05 24.6 0.0 2.2 2 0 0 2 2 2 1 Lycopene cyclase protein FAD_binding_3 PF01494.14 gi|257388253|ref|YP_003178026.1| - 8.5e-07 28.3 0.7 6.7e-06 25.3 0.5 2.2 1 1 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.9 gi|257388253|ref|YP_003178026.1| - 3.8e-06 26.9 0.2 6.3e-06 26.2 0.1 1.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|257388253|ref|YP_003178026.1| - 2.6e-05 23.2 0.1 0.0099 14.7 0.1 2.1 2 0 0 2 2 2 2 Glucose inhibited division protein A Thi4 PF01946.12 gi|257388253|ref|YP_003178026.1| - 4.3e-05 22.7 0.1 0.00017 20.7 0.0 1.9 2 0 0 2 2 2 1 Thi4 family HI0933_like PF03486.9 gi|257388253|ref|YP_003178026.1| - 4.4e-05 22.1 0.0 0.00045 18.7 0.0 2.0 2 0 0 2 2 2 1 HI0933-like protein FAD_oxidored PF12831.2 gi|257388253|ref|YP_003178026.1| - 0.00019 20.6 3.5 0.0015 17.7 2.4 2.1 1 1 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|257388253|ref|YP_003178026.1| - 0.00035 20.5 0.1 0.0013 18.7 0.0 2.0 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain 3HCDH_N PF02737.13 gi|257388253|ref|YP_003178026.1| - 0.018 14.6 0.1 0.028 14.0 0.1 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CPSase_L_chain PF00289.17 gi|257388253|ref|YP_003178026.1| - 0.036 14.1 0.0 0.069 13.2 0.0 1.5 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, N-terminal domain NAD_binding_10 PF13460.1 gi|257388253|ref|YP_003178026.1| - 0.065 13.2 0.0 0.16 11.9 0.0 1.6 1 0 0 1 1 1 0 NADH(P)-binding TrkA_N PF02254.13 gi|257388253|ref|YP_003178026.1| - 0.091 12.7 0.0 0.22 11.5 0.0 1.6 1 0 0 1 1 1 0 TrkA-N domain XdhC_C PF13478.1 gi|257388253|ref|YP_003178026.1| - 0.15 12.3 0.2 0.56 10.5 0.0 2.0 2 0 0 2 2 2 0 XdhC Rossmann domain Aminotran_3 PF00202.16 gi|257388254|ref|YP_003178027.1| - 2.7e-62 210.6 0.0 4.2e-62 209.9 0.0 1.3 1 1 0 1 1 1 1 Aminotransferase class-III DUF4010 PF13194.1 gi|257388255|ref|YP_003178028.1| - 1.8e-53 180.9 27.3 1.8e-53 180.9 18.9 2.6 2 1 1 3 3 3 1 Domain of unknown function (DUF4010) MgtC PF02308.11 gi|257388255|ref|YP_003178028.1| - 1.3e-11 44.5 10.3 1.3e-11 44.5 7.2 3.4 3 2 0 3 3 3 1 MgtC family UPF0118 PF01594.11 gi|257388256|ref|YP_003178029.1| - 2.8e-34 118.6 24.0 3.3e-34 118.3 16.6 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF20 DUF1427 PF07235.6 gi|257388256|ref|YP_003178029.1| - 0.63 10.1 11.0 0.28 11.2 4.7 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1427) DUF3382 PF11862.3 gi|257388256|ref|YP_003178029.1| - 1.6 8.6 11.3 0.67 9.8 0.8 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF3382) PadR PF03551.9 gi|257388257|ref|YP_003178030.1| - 1.8e-17 62.8 2.0 2.2e-17 62.5 1.4 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|257388257|ref|YP_003178030.1| - 0.00012 22.3 0.0 0.00015 22.0 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF1495 PF07381.6 gi|257388257|ref|YP_003178030.1| - 0.0026 17.4 0.0 0.0039 16.8 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) HTH_45 PF14947.1 gi|257388257|ref|YP_003178030.1| - 0.003 17.3 0.1 0.004 16.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_34 PF13601.1 gi|257388257|ref|YP_003178030.1| - 0.024 14.6 0.0 0.031 14.3 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|257388257|ref|YP_003178030.1| - 0.05 13.2 0.2 2.3 7.9 0.1 2.2 2 0 0 2 2 2 0 MarR family TrmB PF01978.14 gi|257388257|ref|YP_003178030.1| - 0.078 12.6 0.1 0.11 12.2 0.1 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Penicillinase_R PF03965.11 gi|257388257|ref|YP_003178030.1| - 0.1 12.6 0.0 0.11 12.5 0.0 1.3 1 0 0 1 1 1 0 Penicillinase repressor HemN_C PF06969.11 gi|257388257|ref|YP_003178030.1| - 0.11 12.5 0.0 0.19 11.7 0.0 1.5 1 1 0 1 1 1 0 HemN C-terminal domain Cdc6_C PF09079.6 gi|257388258|ref|YP_003178031.1| - 0.0015 18.1 0.3 0.0018 17.9 0.2 1.1 1 0 0 1 1 1 1 CDC6, C terminal Nab1 PF04902.7 gi|257388258|ref|YP_003178031.1| - 0.15 11.5 0.2 0.15 11.5 0.1 1.0 1 0 0 1 1 1 0 Conserved region in Nab1 HypA PF01155.14 gi|257388259|ref|YP_003178032.1| - 0.0055 16.3 0.6 0.0091 15.6 0.4 1.3 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family DZR PF12773.2 gi|257388259|ref|YP_003178032.1| - 0.021 14.6 0.4 0.033 13.9 0.3 1.3 1 0 0 1 1 1 0 Double zinc ribbon DNA_RNApol_7kD PF03604.8 gi|257388259|ref|YP_003178032.1| - 0.058 12.8 0.4 0.11 11.9 0.3 1.4 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit GATA PF00320.22 gi|257388259|ref|YP_003178032.1| - 0.095 12.0 0.2 0.095 12.0 0.2 1.8 2 0 0 2 2 2 0 GATA zinc finger TFIIS_C PF01096.13 gi|257388259|ref|YP_003178032.1| - 0.11 12.0 2.0 18 5.0 0.4 3.1 3 0 0 3 3 3 0 Transcription factor S-II (TFIIS) UPF0547 PF10571.4 gi|257388259|ref|YP_003178032.1| - 0.14 11.8 0.8 0.27 10.9 0.5 1.5 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 Ribosomal_S14 PF00253.16 gi|257388259|ref|YP_003178032.1| - 0.15 11.4 2.1 0.17 11.2 0.7 1.7 1 1 1 2 2 2 0 Ribosomal protein S14p/S29e Zn-ribbon_8 PF09723.5 gi|257388259|ref|YP_003178032.1| - 0.21 11.5 2.2 0.65 10.0 1.5 1.8 1 1 0 1 1 1 0 Zinc ribbon domain DUF1451 PF07295.6 gi|257388259|ref|YP_003178032.1| - 0.23 11.2 1.4 0.98 9.1 0.2 2.3 3 0 0 3 3 3 0 Protein of unknown function (DUF1451) Zn_Tnp_IS1595 PF12760.2 gi|257388259|ref|YP_003178032.1| - 0.41 10.5 4.2 12 5.8 0.1 2.3 1 1 1 2 2 2 0 Transposase zinc-ribbon domain NUDIX PF00293.23 gi|257388260|ref|YP_003178033.1| - 0.00071 19.2 0.2 0.00097 18.7 0.1 1.3 1 0 0 1 1 1 1 NUDIX domain THF_DHG_CYH_C PF02882.14 gi|257388261|ref|YP_003178034.1| - 7e-68 226.7 1.4 1e-67 226.2 1.0 1.2 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain THF_DHG_CYH PF00763.18 gi|257388261|ref|YP_003178034.1| - 8.1e-37 125.8 0.3 1.3e-36 125.1 0.2 1.3 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain SHMT PF00464.14 gi|257388263|ref|YP_003178036.1| - 2.7e-153 510.0 0.0 3.2e-153 509.8 0.0 1.0 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_1_2 PF00155.16 gi|257388263|ref|YP_003178036.1| - 7e-11 41.6 0.0 1.3e-10 40.7 0.0 1.5 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.16 gi|257388263|ref|YP_003178036.1| - 5.2e-06 25.8 0.0 2.4e-05 23.6 0.0 1.8 1 1 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|257388263|ref|YP_003178036.1| - 0.0069 15.4 0.9 0.013 14.5 0.7 1.6 1 1 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Trypsin_2 PF13365.1 gi|257388263|ref|YP_003178036.1| - 0.024 14.6 0.0 0.043 13.8 0.0 1.6 1 1 0 1 1 1 0 Trypsin-like peptidase domain CHAT PF12770.2 gi|257388264|ref|YP_003178037.1| - 0.02 14.0 0.1 0.066 12.3 0.1 1.7 1 1 0 1 1 1 0 CHAT domain DUF876 PF05936.7 gi|257388265|ref|YP_003178038.1| - 0.039 12.4 0.0 0.063 11.7 0.0 1.3 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF876) MarR PF01047.17 gi|257388265|ref|YP_003178038.1| - 0.15 11.7 0.2 13 5.6 0.0 2.5 2 0 0 2 2 2 0 MarR family YcaO PF02624.11 gi|257388266|ref|YP_003178039.1| - 1.1e-61 209.1 10.7 1.1e-61 209.1 7.4 1.7 2 0 0 2 2 2 1 YcaO-like family LtrA PF06772.6 gi|257388267|ref|YP_003178040.1| - 0.041 12.7 1.9 0.075 11.9 1.3 1.4 1 0 0 1 1 1 0 Bacterial low temperature requirement A protein (LtrA) DUF63 PF01889.12 gi|257388268|ref|YP_003178041.1| - 1.5e-32 113.8 11.6 9.9e-32 111.0 7.8 2.3 2 1 0 2 2 2 1 Membrane protein of unknown function DUF63 Inositol_P PF00459.20 gi|257388269|ref|YP_003178042.1| - 9.3e-51 172.7 3.2 1.1e-50 172.4 2.2 1.0 1 0 0 1 1 1 1 Inositol monophosphatase family Pro_Al_protease PF02983.9 gi|257388269|ref|YP_003178042.1| - 0.27 11.2 0.0 0.27 11.2 0.0 3.6 4 0 0 4 4 4 0 Alpha-lytic protease prodomain DUF4187 PF13821.1 gi|257388271|ref|YP_003178044.1| - 0.0048 16.4 1.4 0.007 15.9 1.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4187) zf-ribbon_3 PF13248.1 gi|257388271|ref|YP_003178044.1| - 0.034 13.3 1.0 0.052 12.7 0.1 1.7 2 0 0 2 2 2 0 zinc-ribbon domain zf-C2H2_4 PF13894.1 gi|257388271|ref|YP_003178044.1| - 0.048 14.0 0.1 0.11 12.9 0.0 1.5 1 0 0 1 1 1 0 C2H2-type zinc finger zf-Di19 PF05605.7 gi|257388271|ref|YP_003178044.1| - 0.076 13.1 0.8 0.12 12.4 0.5 1.3 1 0 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding DUF3040 PF11239.3 gi|257388271|ref|YP_003178044.1| - 0.082 12.9 0.4 0.11 12.5 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) zf-C2H2_jaz PF12171.3 gi|257388271|ref|YP_003178044.1| - 0.086 13.0 0.1 0.13 12.4 0.1 1.3 1 0 0 1 1 1 0 Zinc-finger double-stranded RNA-binding DZR PF12773.2 gi|257388271|ref|YP_003178044.1| - 0.12 12.2 0.7 0.17 11.7 0.5 1.3 1 1 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|257388271|ref|YP_003178044.1| - 0.13 11.8 1.6 0.33 10.5 1.1 1.6 1 1 0 1 1 1 0 zinc-ribbon domain DUF309 PF03745.9 gi|257388272|ref|YP_003178045.1| - 2.6e-15 55.6 0.6 3.8e-15 55.0 0.4 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF309) AstE_AspA PF04952.9 gi|257388273|ref|YP_003178046.1| - 1.3e-18 66.9 0.0 2.4e-18 66.0 0.0 1.4 1 1 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family Peptidase_M14 PF00246.19 gi|257388273|ref|YP_003178046.1| - 0.036 13.6 0.1 0.27 10.7 0.0 2.2 3 0 0 3 3 3 0 Zinc carboxypeptidase UPF0179 PF03684.8 gi|257388274|ref|YP_003178047.1| - 9.9e-49 164.5 0.0 1.1e-48 164.4 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0179) DDE_Tnp_1_6 PF13751.1 gi|257388274|ref|YP_003178047.1| - 0.0038 17.2 0.1 0.012 15.5 0.0 1.8 2 0 0 2 2 2 1 Transposase DDE domain PAS_4 PF08448.5 gi|257388275|ref|YP_003178048.1| - 6.1e-10 39.1 4.2 3.5e-09 36.6 0.3 3.4 4 0 0 4 4 4 1 PAS fold HisKA PF00512.20 gi|257388275|ref|YP_003178048.1| - 1.9e-06 27.7 0.1 8.3e-06 25.7 0.0 2.2 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain DUF1349 PF07081.6 gi|257388275|ref|YP_003178048.1| - 0.0037 16.6 0.0 0.0063 15.8 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF1349) PspB PF06667.7 gi|257388275|ref|YP_003178048.1| - 0.045 13.6 1.2 0.42 10.5 0.1 2.3 2 0 0 2 2 2 0 Phage shock protein B HATPase_c PF02518.21 gi|257388276|ref|YP_003178049.1| - 3e-16 59.1 0.0 1e-15 57.3 0.0 1.9 3 0 0 3 3 3 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|257388276|ref|YP_003178049.1| - 7.1e-10 38.9 0.7 7.1e-10 38.9 0.5 2.4 3 0 0 3 3 3 1 PAS fold HisKA PF00512.20 gi|257388276|ref|YP_003178049.1| - 3.7e-07 30.0 0.1 1.1e-06 28.5 0.1 1.8 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_2 PF13581.1 gi|257388276|ref|YP_003178049.1| - 0.00024 20.8 0.1 0.0011 18.7 0.0 2.1 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain Striatin PF08232.7 gi|257388276|ref|YP_003178049.1| - 0.0093 16.2 0.3 0.017 15.4 0.2 1.4 1 0 0 1 1 1 1 Striatin family PAS_9 PF13426.1 gi|257388276|ref|YP_003178049.1| - 0.018 15.3 0.0 0.053 13.9 0.0 1.8 2 0 0 2 2 2 0 PAS domain HATPase_c_3 PF13589.1 gi|257388276|ref|YP_003178049.1| - 0.023 14.3 0.0 0.045 13.3 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF1349 PF07081.6 gi|257388276|ref|YP_003178049.1| - 0.061 12.6 0.0 0.18 11.1 0.0 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF1349) PrkA PF06798.7 gi|257388278|ref|YP_003178051.1| - 1.9e-76 256.6 5.7 1.9e-76 256.6 3.9 1.9 3 0 0 3 3 3 1 PrkA serine protein kinase C-terminal domain AAA_PrkA PF08298.6 gi|257388278|ref|YP_003178051.1| - 4.1e-65 219.8 0.0 6.5e-65 219.1 0.0 1.3 1 0 0 1 1 1 1 PrkA AAA domain Lsr2 PF11774.3 gi|257388278|ref|YP_003178051.1| - 0.14 12.0 2.6 0.15 11.9 0.4 2.1 2 0 0 2 2 2 0 Lsr2 AAA_PrkA PF08298.6 gi|257388279|ref|YP_003178052.1| - 1e-17 63.8 0.0 5.3e-12 45.1 0.0 3.2 2 1 0 2 2 2 2 PrkA AAA domain PrkA PF06798.7 gi|257388279|ref|YP_003178052.1| - 2.1e-06 27.2 0.1 3.9e-06 26.3 0.1 1.5 1 0 0 1 1 1 1 PrkA serine protein kinase C-terminal domain AAA_22 PF13401.1 gi|257388279|ref|YP_003178052.1| - 0.14 12.3 0.1 1.4 9.0 0.0 2.7 2 1 0 2 2 2 0 AAA domain DUF444 PF04285.7 gi|257388280|ref|YP_003178053.1| - 7.1e-104 347.7 0.4 8e-104 347.6 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF444) SpoVR PF04293.8 gi|257388281|ref|YP_003178054.1| - 1.3e-76 257.7 8.9 2.4e-65 220.5 2.7 2.9 2 1 0 2 2 2 2 SpoVR like protein FAD_binding_7 PF03441.9 gi|257388282|ref|YP_003178055.1| - 5.7e-77 258.6 1.5 9e-77 257.9 1.0 1.2 1 0 0 1 1 1 1 FAD binding domain of DNA photolyase DNA_photolyase PF00875.13 gi|257388282|ref|YP_003178055.1| - 3.6e-44 150.4 0.0 6.9e-44 149.5 0.0 1.4 1 0 0 1 1 1 1 DNA photolyase Usp PF00582.21 gi|257388282|ref|YP_003178055.1| - 0.06 13.5 0.0 0.12 12.6 0.0 1.4 1 0 0 1 1 1 0 Universal stress protein family AMP-binding PF00501.23 gi|257388283|ref|YP_003178056.1| - 6.8e-89 298.1 0.0 8.5e-89 297.8 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|257388283|ref|YP_003178056.1| - 0.038 14.9 0.0 0.15 12.9 0.0 2.0 1 1 0 1 1 1 0 AMP-binding enzyme C-terminal domain Nop PF01798.13 gi|257388284|ref|YP_003178057.1| - 7.9e-42 142.0 0.0 1.2e-41 141.5 0.0 1.3 1 0 0 1 1 1 1 Putative snoRNA binding domain PhoU PF01895.14 gi|257388284|ref|YP_003178057.1| - 0.003 17.9 0.1 1.4 9.4 0.0 2.4 2 0 0 2 2 2 2 PhoU domain Packaging_FI PF14000.1 gi|257388284|ref|YP_003178057.1| - 0.36 11.0 4.4 5.9 7.1 0.6 2.6 1 1 1 2 2 2 0 DNA packaging protein FI Fibrillarin PF01269.12 gi|257388285|ref|YP_003178058.1| - 1.6e-52 177.6 0.0 2e-52 177.4 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin GCS2 PF04107.8 gi|257388286|ref|YP_003178059.1| - 6.3e-76 255.2 0.3 7.4e-76 255.0 0.2 1.0 1 0 0 1 1 1 1 Glutamate-cysteine ligase family 2(GCS2) Amidoligase_2 PF12224.3 gi|257388286|ref|YP_003178059.1| - 0.024 14.2 0.7 0.66 9.5 0.4 2.7 2 1 0 2 2 2 0 Putative amidoligase enzyme GCS PF03074.11 gi|257388286|ref|YP_003178059.1| - 0.055 12.5 0.0 0.084 11.9 0.0 1.2 1 0 0 1 1 1 0 Glutamate-cysteine ligase TrmB PF01978.14 gi|257388287|ref|YP_003178060.1| - 3.4e-07 29.8 0.0 5.3e-07 29.2 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|257388287|ref|YP_003178060.1| - 4.2e-05 22.8 0.0 6.9e-05 22.1 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|257388287|ref|YP_003178060.1| - 0.00027 20.6 0.1 0.00044 20.0 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain GntR PF00392.16 gi|257388287|ref|YP_003178060.1| - 0.00034 19.9 0.1 0.00071 18.9 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_IclR PF09339.5 gi|257388287|ref|YP_003178060.1| - 0.00044 19.7 0.1 0.0007 19.1 0.1 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain TFIIE_alpha PF02002.12 gi|257388287|ref|YP_003178060.1| - 0.003 17.0 0.0 0.0056 16.1 0.0 1.4 1 0 0 1 1 1 1 TFIIE alpha subunit MarR_2 PF12802.2 gi|257388287|ref|YP_003178060.1| - 0.0031 17.1 0.1 0.0051 16.4 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|257388287|ref|YP_003178060.1| - 0.0061 16.8 0.1 0.019 15.3 0.0 1.8 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|257388287|ref|YP_003178060.1| - 0.0063 16.1 0.0 0.01 15.4 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.17 gi|257388287|ref|YP_003178060.1| - 0.011 15.4 0.0 0.019 14.6 0.0 1.4 1 0 0 1 1 1 0 MarR family Rrf2 PF02082.15 gi|257388287|ref|YP_003178060.1| - 0.021 14.9 0.0 0.034 14.2 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator Fe_dep_repress PF01325.14 gi|257388287|ref|YP_003178060.1| - 0.035 14.0 0.0 0.064 13.2 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_Tnp_Tc3_2 PF01498.13 gi|257388287|ref|YP_003178060.1| - 0.07 13.1 0.0 0.12 12.4 0.0 1.3 1 0 0 1 1 1 0 Transposase HTH_29 PF13551.1 gi|257388287|ref|YP_003178060.1| - 0.14 12.3 0.1 0.5 10.5 0.0 1.8 1 1 1 2 2 2 0 Winged helix-turn helix FaeA PF04703.7 gi|257388287|ref|YP_003178060.1| - 0.15 12.2 0.0 0.23 11.6 0.0 1.2 1 0 0 1 1 1 0 FaeA-like protein CTP_transf_2 PF01467.21 gi|257388288|ref|YP_003178061.1| - 1.2e-11 44.9 0.1 2e-10 40.9 0.1 2.0 1 1 0 1 1 1 1 Cytidylyltransferase FAD_syn PF06574.7 gi|257388288|ref|YP_003178061.1| - 0.0026 17.4 0.3 0.011 15.3 0.2 2.1 1 1 0 1 1 1 1 FAD synthetase TFIIB PF00382.14 gi|257388289|ref|YP_003178062.1| - 2.3e-05 24.1 0.1 3.3e-05 23.6 0.1 1.3 1 0 0 1 1 1 1 Transcription factor TFIIB repeat HATPase_c PF02518.21 gi|257388290|ref|YP_003178063.1| - 5.6e-18 64.6 0.1 2.9e-17 62.3 0.0 2.1 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.1 gi|257388290|ref|YP_003178063.1| - 2.4e-07 30.3 0.0 1.6e-06 27.7 0.0 2.1 1 1 1 2 2 2 1 GHKL domain HATPase_c_2 PF13581.1 gi|257388290|ref|YP_003178063.1| - 8.7e-07 28.7 0.0 2.3e-06 27.3 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain MFS_1 PF07690.11 gi|257388290|ref|YP_003178063.1| - 0.0048 15.6 2.7 0.0066 15.1 1.9 1.1 1 0 0 1 1 1 1 Major Facilitator Superfamily HATPase_c_3 PF13589.1 gi|257388290|ref|YP_003178063.1| - 0.062 12.9 0.0 0.14 11.8 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase SPOB_a PF14689.1 gi|257388290|ref|YP_003178063.1| - 0.09 12.3 0.3 0.22 11.1 0.0 1.7 2 0 0 2 2 2 0 Sensor_kinase_SpoOB-type, alpha-helical domain Vma12 PF11712.3 gi|257388290|ref|YP_003178063.1| - 0.16 11.6 5.2 0.41 10.3 3.6 1.7 1 0 0 1 1 1 0 Endoplasmic reticulum-based factor for assembly of V-ATPase Bac_export_3 PF01313.14 gi|257388290|ref|YP_003178063.1| - 0.3 10.7 3.9 0.81 9.4 2.7 1.7 1 0 0 1 1 1 0 Bacterial export proteins, family 3 Prok-RING_1 PF14446.1 gi|257388291|ref|YP_003178064.1| - 0.0029 17.2 1.3 0.0051 16.5 0.9 1.4 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 DBI_PRT PF02277.12 gi|257388292|ref|YP_003178065.1| - 3.6e-13 49.3 2.3 3.6e-13 49.3 1.6 1.5 2 0 0 2 2 2 1 Phosphoribosyltransferase DUF4575 PF15143.1 gi|257388292|ref|YP_003178065.1| - 0.038 13.7 1.8 0.056 13.1 0.3 1.9 1 1 1 2 2 1 0 Domain of unknown function (DUF4575) DisA_N PF02457.11 gi|257388293|ref|YP_003178066.1| - 2.9e-26 90.9 0.0 4.5e-26 90.3 0.0 1.3 1 0 0 1 1 1 1 DisA bacterial checkpoint controller nucleotide-binding MS_channel PF00924.13 gi|257388294|ref|YP_003178067.1| - 4.8e-17 61.9 1.2 1.1e-16 60.7 0.8 1.6 1 0 0 1 1 1 1 Mechanosensitive ion channel TM_helix PF05552.7 gi|257388294|ref|YP_003178067.1| - 0.00044 19.8 0.2 0.00044 19.8 0.2 3.7 4 0 0 4 4 4 2 Conserved TM helix KOW PF00467.24 gi|257388294|ref|YP_003178067.1| - 0.055 13.2 0.4 0.13 11.9 0.3 1.7 1 0 0 1 1 1 0 KOW motif Fimbrial_PilY2 PF14481.1 gi|257388294|ref|YP_003178067.1| - 0.12 11.8 0.0 0.24 10.8 0.0 1.5 1 0 0 1 1 1 0 Type 4 fimbrial biogenesis protein PilY2 AMP-binding PF00501.23 gi|257388295|ref|YP_003178068.1| - 2.4e-80 270.0 0.7 2.4e-80 270.0 0.5 1.4 2 0 0 2 2 2 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|257388295|ref|YP_003178068.1| - 1.2e-14 54.9 3.0 3e-14 53.7 2.1 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain MR_MLE PF01188.16 gi|257388296|ref|YP_003178069.1| - 9.1e-17 61.3 0.3 5.7e-16 58.8 0.2 2.5 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MR_MLE_C PF13378.1 gi|257388296|ref|YP_003178069.1| - 2.1e-14 53.4 2.5 6e-14 51.9 1.7 1.8 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.11 gi|257388296|ref|YP_003178069.1| - 0.00058 19.8 0.4 0.00058 19.8 0.3 2.4 3 1 0 3 3 3 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain UbiA PF01040.13 gi|257388297|ref|YP_003178070.1| - 6.2e-38 130.4 22.2 7.5e-38 130.2 15.4 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family DoxX PF07681.7 gi|257388298|ref|YP_003178071.1| - 2e-05 24.9 11.9 2e-05 24.9 8.2 1.8 2 0 0 2 2 2 1 DoxX UbiA PF01040.13 gi|257388298|ref|YP_003178071.1| - 0.049 12.8 11.6 0.32 10.1 8.2 1.8 1 1 0 1 1 1 0 UbiA prenyltransferase family DUF4131 PF13567.1 gi|257388298|ref|YP_003178071.1| - 0.66 9.3 4.3 0.24 10.8 0.8 1.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) ECH PF00378.15 gi|257388299|ref|YP_003178072.1| - 4e-48 163.6 0.0 6.4e-39 133.5 0.1 2.0 1 1 1 2 2 2 2 Enoyl-CoA hydratase/isomerase family MR_MLE_C PF13378.1 gi|257388300|ref|YP_003178073.1| - 3.9e-27 94.4 0.0 9.5e-27 93.1 0.0 1.7 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.11 gi|257388300|ref|YP_003178073.1| - 2.1e-14 53.4 0.0 4.8e-14 52.3 0.0 1.6 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MR_MLE PF01188.16 gi|257388300|ref|YP_003178073.1| - 1.5e-11 44.6 0.3 1.4e-09 38.3 0.0 3.5 3 0 0 3 3 3 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain SBP_bac_11 PF13531.1 gi|257388300|ref|YP_003178073.1| - 0.13 11.8 0.0 0.2 11.2 0.0 1.3 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein MCPsignal PF00015.16 gi|257388301|ref|YP_003178074.1| - 2.7e-44 151.2 55.0 6.8e-42 143.4 21.1 3.2 1 1 2 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain Laminin_II PF06009.7 gi|257388301|ref|YP_003178074.1| - 8.6e-08 32.0 26.9 0.002 17.9 2.0 5.1 3 2 2 5 5 5 4 Laminin Domain II DUF948 PF06103.6 gi|257388301|ref|YP_003178074.1| - 1.1e-05 25.1 19.3 0.73 9.7 3.2 5.7 3 2 2 5 5 5 2 Bacterial protein of unknown function (DUF948) DHC_N1 PF08385.7 gi|257388301|ref|YP_003178074.1| - 0.00042 18.8 6.1 0.23 9.7 0.3 3.1 2 1 1 3 3 3 1 Dynein heavy chain, N-terminal region 1 DUF1664 PF07889.7 gi|257388301|ref|YP_003178074.1| - 0.00076 19.2 26.7 0.055 13.2 1.5 5.0 4 2 1 5 5 4 2 Protein of unknown function (DUF1664) AAA_13 PF13166.1 gi|257388301|ref|YP_003178074.1| - 0.00092 17.7 17.0 0.00092 17.7 11.8 2.4 1 1 0 2 2 2 1 AAA domain CCDC144C PF14915.1 gi|257388301|ref|YP_003178074.1| - 0.0013 17.6 1.3 0.0013 17.6 0.9 3.3 3 0 0 3 3 3 1 CCDC144C protein coiled-coil region NPV_P10 PF05531.7 gi|257388301|ref|YP_003178074.1| - 0.0021 18.2 27.5 0.14 12.3 0.9 5.9 4 2 0 4 4 4 1 Nucleopolyhedrovirus P10 protein TPR_MLP1_2 PF07926.7 gi|257388301|ref|YP_003178074.1| - 0.0021 17.7 36.3 0.21 11.3 0.2 4.3 3 2 0 3 3 3 1 TPR/MLP1/MLP2-like protein RmuC PF02646.11 gi|257388301|ref|YP_003178074.1| - 0.0023 16.8 14.3 0.47 9.2 2.6 4.0 2 1 2 4 4 4 2 RmuC family DUF972 PF06156.8 gi|257388301|ref|YP_003178074.1| - 0.0044 17.3 23.5 0.023 15.0 0.0 4.6 3 2 1 4 4 4 1 Protein of unknown function (DUF972) Baculo_PEP_C PF04513.7 gi|257388301|ref|YP_003178074.1| - 0.005 16.6 17.1 0.23 11.2 2.3 4.3 2 1 1 4 4 4 1 Baculovirus polyhedron envelope protein, PEP, C terminus Herpes_U30 PF04523.8 gi|257388301|ref|YP_003178074.1| - 0.0052 14.3 8.4 0.037 11.5 0.7 3.0 1 1 3 4 4 4 1 Herpes virus tegument protein U30 Prefoldin_2 PF01920.15 gi|257388301|ref|YP_003178074.1| - 0.0092 15.7 27.7 0.13 11.9 0.1 5.3 3 2 2 5 5 5 1 Prefoldin subunit EzrA PF06160.7 gi|257388301|ref|YP_003178074.1| - 0.011 14.0 31.1 0.11 10.6 5.7 3.3 3 1 0 3 3 3 0 Septation ring formation regulator, EzrA BLOC1_2 PF10046.4 gi|257388301|ref|YP_003178074.1| - 0.011 15.8 28.7 0.097 12.8 0.8 5.6 3 2 0 4 4 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 CorA PF01544.13 gi|257388301|ref|YP_003178074.1| - 0.016 14.2 15.6 0.076 12.0 1.2 3.0 3 0 0 3 3 3 0 CorA-like Mg2+ transporter protein GAS PF13851.1 gi|257388301|ref|YP_003178074.1| - 0.019 14.1 25.3 0.16 11.1 0.1 3.6 3 1 0 3 3 3 0 Growth-arrest specific micro-tubule binding bZIP_1 PF00170.16 gi|257388301|ref|YP_003178074.1| - 0.025 14.5 6.4 2.1 8.3 0.2 4.2 3 1 1 4 4 4 0 bZIP transcription factor Seryl_tRNA_N PF02403.17 gi|257388301|ref|YP_003178074.1| - 0.038 13.9 30.9 0.12 12.4 0.1 5.3 2 1 4 6 6 6 0 Seryl-tRNA synthetase N-terminal domain Atg14 PF10186.4 gi|257388301|ref|YP_003178074.1| - 0.056 12.3 18.4 0.52 9.1 4.0 3.2 2 1 1 3 3 3 0 UV radiation resistance protein and autophagy-related subunit 14 LOH1CR12 PF10158.4 gi|257388301|ref|YP_003178074.1| - 0.058 13.1 12.7 0.96 9.2 0.6 3.8 2 1 1 3 3 3 0 Tumour suppressor protein Mod_r PF07200.8 gi|257388301|ref|YP_003178074.1| - 0.069 13.0 25.0 0.3 11.0 5.6 4.3 3 1 1 4 4 4 0 Modifier of rudimentary (Mod(r)) protein COG2 PF06148.6 gi|257388301|ref|YP_003178074.1| - 0.11 12.3 24.1 1.4 8.7 0.0 5.6 3 2 2 5 5 5 0 COG (conserved oligomeric Golgi) complex component, COG2 IncA PF04156.9 gi|257388301|ref|YP_003178074.1| - 0.12 11.9 39.9 0.07 12.7 1.4 4.8 2 2 2 5 5 4 0 IncA protein RPW8 PF05659.6 gi|257388301|ref|YP_003178074.1| - 0.19 11.2 5.7 4.9 6.6 0.8 3.5 3 1 1 4 4 3 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 TBPIP PF07106.8 gi|257388301|ref|YP_003178074.1| - 0.21 11.1 25.1 0.22 11.0 0.1 4.1 3 2 1 4 4 4 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Syntaxin-6_N PF09177.6 gi|257388301|ref|YP_003178074.1| - 0.25 11.7 27.2 1.9 8.9 3.2 4.8 3 2 1 4 4 4 0 Syntaxin 6, N-terminal DUF904 PF06005.7 gi|257388301|ref|YP_003178074.1| - 0.28 11.5 17.0 0.92 9.8 0.5 3.8 3 1 0 3 3 3 0 Protein of unknown function (DUF904) DivIC PF04977.10 gi|257388301|ref|YP_003178074.1| - 0.31 10.5 0.0 0.31 10.5 0.0 4.7 5 0 0 5 5 4 0 Septum formation initiator TMP_2 PF06791.8 gi|257388301|ref|YP_003178074.1| - 0.36 10.4 27.5 1.1 8.8 5.1 3.5 1 1 2 3 3 3 0 Prophage tail length tape measure protein DUF1192 PF06698.6 gi|257388301|ref|YP_003178074.1| - 0.39 10.5 11.6 0.097 12.5 1.4 4.5 3 1 1 4 4 4 0 Protein of unknown function (DUF1192) Mnd1 PF03962.10 gi|257388301|ref|YP_003178074.1| - 0.4 10.3 32.1 0.17 11.5 5.1 3.5 2 1 0 3 3 3 0 Mnd1 family Lectin_N PF03954.9 gi|257388301|ref|YP_003178074.1| - 0.4 10.0 7.6 1.9 7.9 0.6 3.8 3 1 0 3 3 3 0 Hepatic lectin, N-terminal domain DASH_Dam1 PF08653.5 gi|257388301|ref|YP_003178074.1| - 0.48 10.2 11.8 25 4.7 0.2 5.7 4 2 1 5 5 5 0 DASH complex subunit Dam1 Syntaxin PF00804.20 gi|257388301|ref|YP_003178074.1| - 0.92 9.7 28.4 1.1e+02 3.0 0.0 4.7 2 1 1 3 3 3 0 Syntaxin PhageMin_Tail PF10145.4 gi|257388301|ref|YP_003178074.1| - 0.93 9.0 27.4 0.36 10.4 8.3 3.4 1 1 3 4 4 4 0 Phage-related minor tail protein Sipho_Gp157 PF05565.6 gi|257388301|ref|YP_003178074.1| - 0.97 8.9 0.0 0.97 8.9 0.0 4.2 2 1 2 4 4 3 0 Siphovirus Gp157 ADIP PF11559.3 gi|257388301|ref|YP_003178074.1| - 1.3 8.9 22.1 1.2 9.0 0.2 3.6 3 1 0 3 3 3 0 Afadin- and alpha -actinin-Binding Spc7 PF08317.6 gi|257388301|ref|YP_003178074.1| - 1.3 7.5 30.5 1.9 7.0 5.1 3.3 2 1 1 3 3 3 0 Spc7 kinetochore protein Barstar PF01337.13 gi|257388301|ref|YP_003178074.1| - 1.9 8.3 9.7 2.9 7.7 0.1 4.7 4 1 1 5 5 4 0 Barstar (barnase inhibitor) Fib_alpha PF08702.5 gi|257388301|ref|YP_003178074.1| - 2 8.5 23.7 1.3 9.0 0.9 4.6 2 1 1 4 4 4 0 Fibrinogen alpha/beta chain family DUF1319 PF07028.6 gi|257388301|ref|YP_003178074.1| - 2.1 8.5 11.9 4.2 7.5 0.0 4.7 3 2 1 4 4 4 0 Protein of unknown function (DUF1319) Reo_sigmaC PF04582.7 gi|257388301|ref|YP_003178074.1| - 2.4 7.2 27.2 0.57 9.3 1.2 3.7 1 1 0 3 3 3 0 Reovirus sigma C capsid protein ERM PF00769.14 gi|257388301|ref|YP_003178074.1| - 2.5 7.5 40.1 0.062 12.8 1.2 3.2 2 1 1 3 3 3 0 Ezrin/radixin/moesin family TMPIT PF07851.8 gi|257388301|ref|YP_003178074.1| - 2.9 6.8 17.3 4.6 6.2 0.8 3.7 3 1 1 4 4 4 0 TMPIT-like protein AATF-Che1 PF13339.1 gi|257388301|ref|YP_003178074.1| - 3 8.0 21.8 14 5.8 3.2 4.3 2 1 2 4 4 4 0 Apoptosis antagonizing transcription factor HCMV_UL139 PF12507.3 gi|257388301|ref|YP_003178074.1| - 3.2 7.9 8.9 6.4 6.9 0.1 3.7 3 2 1 4 4 4 0 Human Cytomegalovirus UL139 protein DASH_Dad2 PF08654.5 gi|257388301|ref|YP_003178074.1| - 3.2 7.8 24.3 6.2 6.8 0.0 4.8 2 1 1 4 4 4 0 DASH complex subunit Dad2 Dor1 PF04124.7 gi|257388301|ref|YP_003178074.1| - 3.5 6.0 18.2 3.7 5.9 3.4 3.2 2 1 1 3 3 3 0 Dor1-like family HAMP PF00672.20 gi|257388301|ref|YP_003178074.1| - 4.3 7.6 17.9 2.7 8.2 0.1 5.3 5 1 0 5 5 4 0 HAMP domain Vps51 PF08700.6 gi|257388301|ref|YP_003178074.1| - 4.7 7.1 16.8 9.7 6.1 0.1 5.5 4 2 1 5 5 5 0 Vps51/Vps67 DUF883 PF05957.8 gi|257388301|ref|YP_003178074.1| - 6.5 7.2 39.2 0.85 10.0 1.3 5.5 3 2 2 5 5 5 0 Bacterial protein of unknown function (DUF883) Not3 PF04065.10 gi|257388301|ref|YP_003178074.1| - 6.8 5.8 27.3 0.055 12.7 5.9 3.1 2 1 0 3 3 3 0 Not1 N-terminal domain, CCR4-Not complex component DUF3407 PF11887.3 gi|257388301|ref|YP_003178074.1| - 7.3 5.7 12.1 3.3 6.9 0.2 3.3 3 2 0 3 3 2 0 Protein of unknown function (DUF3407) DUF4200 PF13863.1 gi|257388301|ref|YP_003178074.1| - 7.5 6.5 28.6 0.28 11.1 4.2 3.9 3 1 0 3 3 3 0 Domain of unknown function (DUF4200) Phage_GP20 PF06810.6 gi|257388301|ref|YP_003178074.1| - 7.9 5.9 24.9 0.4 10.1 3.4 4.0 2 1 2 4 4 4 0 Phage minor structural protein GP20 Bac_small_YrzI PF09501.5 gi|257388301|ref|YP_003178074.1| - 8.5 6.3 10.0 7.3 6.5 0.1 3.9 3 1 1 4 4 3 0 Probable sporulation protein (Bac_small_yrzI) DUF812 PF05667.6 gi|257388301|ref|YP_003178074.1| - 9.3 4.6 45.4 2.5 6.5 0.9 4.0 1 1 2 3 3 3 0 Protein of unknown function (DUF812) ATG16 PF08614.6 gi|257388301|ref|YP_003178074.1| - 9.7 5.9 31.9 0.37 10.5 0.3 4.1 2 1 2 4 4 4 0 Autophagy protein 16 (ATG16) AP_endonuc_2 PF01261.19 gi|257388302|ref|YP_003178075.1| - 5e-34 117.4 3.7 6.5e-34 117.0 2.2 1.5 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel AP_endonuc_2_N PF07582.7 gi|257388302|ref|YP_003178075.1| - 4e-18 64.6 0.0 7.1e-18 63.8 0.0 1.4 1 0 0 1 1 1 1 AP endonuclease family 2 C terminus DUF3122 PF11320.3 gi|257388302|ref|YP_003178075.1| - 0.025 14.5 0.0 0.087 12.7 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3122) AIM24 PF01987.12 gi|257388303|ref|YP_003178076.1| - 1.5e-61 207.6 0.4 1.7e-61 207.4 0.3 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 GFO_IDH_MocA PF01408.17 gi|257388304|ref|YP_003178077.1| - 2.3e-16 60.4 0.0 3.6e-16 59.7 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|257388304|ref|YP_003178077.1| - 2.5e-12 46.5 0.5 7.9e-12 44.9 0.3 1.9 1 1 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain Peptidase_M24 PF00557.19 gi|257388305|ref|YP_003178078.1| - 3.8e-16 59.3 0.4 5e-16 58.8 0.3 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|257388305|ref|YP_003178078.1| - 0.0012 19.3 0.2 0.0056 17.1 0.0 2.1 2 0 0 2 2 2 1 Creatinase/Prolidase N-terminal domain Prok-TraM PF09228.5 gi|257388305|ref|YP_003178078.1| - 0.059 13.5 0.3 0.13 12.4 0.2 1.6 1 0 0 1 1 1 0 Prokaryotic Transcriptional repressor TraM Alpha-amylase PF00128.19 gi|257388306|ref|YP_003178079.1| - 1.3e-95 320.4 0.3 2.2e-95 319.7 0.2 1.3 1 0 0 1 1 1 1 Alpha amylase, catalytic domain DUF3459 PF11941.3 gi|257388306|ref|YP_003178079.1| - 6.2e-05 23.0 0.0 0.00015 21.8 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF3459) Alpha-amylase_C PF02806.13 gi|257388306|ref|YP_003178079.1| - 8.8e-05 22.5 0.0 0.00023 21.2 0.0 1.7 1 0 0 1 1 1 1 Alpha amylase, C-terminal all-beta domain hDGE_amylase PF14701.1 gi|257388306|ref|YP_003178079.1| - 0.012 14.5 0.0 0.018 13.9 0.0 1.2 1 0 0 1 1 1 0 glucanotransferase domain of human glycogen debranching enzyme Cyc-maltodext_C PF10438.4 gi|257388306|ref|YP_003178079.1| - 0.015 15.3 0.0 0.03 14.3 0.0 1.4 1 0 0 1 1 1 0 Cyclo-malto-dextrinase C-terminal domain Hemocyanin_M PF00372.14 gi|257388306|ref|YP_003178079.1| - 0.051 12.8 0.0 9.3 5.4 0.0 2.4 2 0 0 2 2 2 0 Hemocyanin, copper containing domain VWA_CoxE PF05762.9 gi|257388306|ref|YP_003178079.1| - 0.068 12.2 0.0 8.1 5.5 0.0 2.2 2 0 0 2 2 2 0 VWA domain containing CoxE-like protein Pribosyltran PF00156.22 gi|257388307|ref|YP_003178080.1| - 3.8e-25 88.0 0.0 6e-25 87.3 0.0 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain HTH_23 PF13384.1 gi|257388307|ref|YP_003178080.1| - 0.0036 16.8 0.0 0.0075 15.8 0.0 1.5 1 0 0 1 1 1 1 Homeodomain-like domain HTH_7 PF02796.10 gi|257388307|ref|YP_003178080.1| - 0.0072 16.1 0.0 0.016 15.0 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase PRTase_2 PF15609.1 gi|257388307|ref|YP_003178080.1| - 0.016 14.4 0.8 0.1 11.8 0.5 2.0 1 1 0 1 1 1 0 Phosphoribosyl transferase HTH_11 PF08279.7 gi|257388307|ref|YP_003178080.1| - 0.024 14.3 0.1 0.076 12.6 0.0 1.9 2 0 0 2 2 2 0 HTH domain Sigma70_r4 PF04545.11 gi|257388307|ref|YP_003178080.1| - 0.031 13.5 0.0 0.053 12.8 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 UPRTase PF14681.1 gi|257388307|ref|YP_003178080.1| - 0.057 12.6 0.0 0.082 12.1 0.0 1.2 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase HTH_38 PF13936.1 gi|257388307|ref|YP_003178080.1| - 0.058 12.9 0.1 0.35 10.4 0.0 2.3 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_24 PF13412.1 gi|257388307|ref|YP_003178080.1| - 0.11 11.8 0.0 0.2 11.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding zf-RING_3 PF14369.1 gi|257388308|ref|YP_003178081.1| - 0.047 13.7 2.6 0.8 9.7 0.6 2.5 2 0 0 2 2 2 0 zinc-finger zinc-ribbons_6 PF07191.7 gi|257388308|ref|YP_003178081.1| - 0.093 12.5 2.2 0.16 11.8 1.5 1.3 1 0 0 1 1 1 0 zinc-ribbons DZR PF12773.2 gi|257388308|ref|YP_003178081.1| - 0.69 9.7 6.7 0.14 11.9 2.0 1.8 2 0 0 2 2 2 0 Double zinc ribbon DUF3039 PF11238.3 gi|257388308|ref|YP_003178081.1| - 0.74 9.3 3.1 0.82 9.1 1.2 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF3039) Zn-ribbon_8 PF09723.5 gi|257388308|ref|YP_003178081.1| - 3.7 7.5 7.4 7.5 6.5 0.2 2.5 1 1 0 2 2 2 0 Zinc ribbon domain zf-H2C2_2 PF13465.1 gi|257388308|ref|YP_003178081.1| - 4.3 7.7 6.2 4.8 7.6 0.1 2.7 3 0 0 3 3 3 0 Zinc-finger double domain zf-ribbon_3 PF13248.1 gi|257388308|ref|YP_003178081.1| - 5.5 6.3 8.1 1.1e+02 2.1 5.7 2.3 1 1 0 1 1 1 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|257388308|ref|YP_003178081.1| - 7.4 6.3 9.0 7 6.3 1.8 2.6 2 1 1 3 3 3 0 Putative transposase DNA-binding domain Regulator_TrmB PF11495.3 gi|257388309|ref|YP_003178082.1| - 2.1e-74 249.4 0.1 2.6e-74 249.1 0.1 1.1 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.14 gi|257388309|ref|YP_003178082.1| - 4e-16 58.4 0.0 6.8e-16 57.7 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.2 gi|257388309|ref|YP_003178082.1| - 0.00025 20.6 0.0 0.0007 19.2 0.0 1.8 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|257388309|ref|YP_003178082.1| - 0.0012 18.2 0.0 0.0046 16.3 0.0 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding PadR PF03551.9 gi|257388309|ref|YP_003178082.1| - 0.0035 17.0 0.0 0.0081 15.9 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_20 PF12840.2 gi|257388309|ref|YP_003178082.1| - 0.0047 16.6 0.0 0.023 14.4 0.0 2.2 2 1 0 2 2 2 1 Helix-turn-helix domain MarR PF01047.17 gi|257388309|ref|YP_003178082.1| - 0.01 15.5 0.0 0.036 13.7 0.0 2.0 2 0 0 2 2 2 0 MarR family HTH_IclR PF09339.5 gi|257388309|ref|YP_003178082.1| - 0.029 13.9 0.0 0.16 11.6 0.0 2.0 2 0 0 2 2 2 0 IclR helix-turn-helix domain GntR PF00392.16 gi|257388309|ref|YP_003178082.1| - 0.04 13.3 0.0 5.4 6.5 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_5 PF01022.15 gi|257388309|ref|YP_003178082.1| - 0.042 13.5 0.0 0.097 12.3 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family PLDc_2 PF13091.1 gi|257388309|ref|YP_003178082.1| - 0.11 12.2 0.0 0.21 11.3 0.0 1.5 1 0 0 1 1 1 0 PLD-like domain Rrf2 PF02082.15 gi|257388309|ref|YP_003178082.1| - 0.11 12.5 0.0 0.59 10.2 0.0 2.2 2 0 0 2 2 2 0 Transcriptional regulator SBP_bac_1 PF01547.20 gi|257388310|ref|YP_003178083.1| - 3.1e-17 63.3 0.5 6.4e-17 62.2 0.3 1.5 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|257388310|ref|YP_003178083.1| - 8.5e-15 55.2 0.1 1.4e-14 54.5 0.1 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.4 gi|257388310|ref|YP_003178083.1| - 0.0074 16.2 4.1 0.0074 16.2 2.9 2.0 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence DUF3983 PF13137.1 gi|257388310|ref|YP_003178083.1| - 0.21 11.2 0.3 0.35 10.5 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3983) BPD_transp_1 PF00528.17 gi|257388311|ref|YP_003178084.1| - 5.1e-16 58.7 20.0 5.1e-16 58.7 13.9 2.5 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|257388312|ref|YP_003178085.1| - 1.2e-13 51.0 18.3 1.2e-13 51.0 12.7 2.4 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|257388313|ref|YP_003178086.1| - 1.7e-33 115.7 0.0 3.5e-33 114.8 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|257388313|ref|YP_003178086.1| - 3e-10 40.5 0.0 1.2e-05 25.4 0.0 2.2 1 1 1 2 2 2 2 AAA domain SMC_N PF02463.14 gi|257388313|ref|YP_003178086.1| - 3.2e-06 26.5 0.0 0.0075 15.5 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain TOBE PF03459.12 gi|257388313|ref|YP_003178086.1| - 6.2e-05 23.0 0.1 1 9.5 0.0 4.0 3 1 0 3 3 3 2 TOBE domain AAA_15 PF13175.1 gi|257388313|ref|YP_003178086.1| - 9.4e-05 21.6 0.0 0.0044 16.1 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.1 gi|257388313|ref|YP_003178086.1| - 0.00031 20.2 0.0 0.00063 19.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain TOBE_2 PF08402.5 gi|257388313|ref|YP_003178086.1| - 0.0007 19.5 0.2 0.0045 16.9 0.1 2.5 1 1 1 2 2 2 1 TOBE domain AAA_5 PF07728.9 gi|257388313|ref|YP_003178086.1| - 0.0015 18.2 0.0 0.0052 16.5 0.0 1.9 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.1 gi|257388313|ref|YP_003178086.1| - 0.002 18.1 0.1 0.007 16.3 0.0 1.8 2 0 0 2 2 2 1 AAA ATPase domain AAA_25 PF13481.1 gi|257388313|ref|YP_003178086.1| - 0.0027 17.1 0.1 0.025 13.9 0.0 2.3 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|257388313|ref|YP_003178086.1| - 0.0032 17.6 0.5 0.028 14.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain DUF258 PF03193.11 gi|257388313|ref|YP_003178086.1| - 0.0035 16.5 0.0 0.0058 15.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_17 PF13207.1 gi|257388313|ref|YP_003178086.1| - 0.0051 17.6 0.5 0.021 15.6 0.3 2.2 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|257388313|ref|YP_003178086.1| - 0.0073 16.4 0.4 0.089 12.9 0.0 2.2 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.10 gi|257388313|ref|YP_003178086.1| - 0.013 14.2 0.0 0.017 13.8 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_10 PF12846.2 gi|257388313|ref|YP_003178086.1| - 0.016 14.6 0.2 0.027 13.9 0.1 1.6 1 1 0 1 1 1 0 AAA-like domain RNA_helicase PF00910.17 gi|257388313|ref|YP_003178086.1| - 0.027 14.6 0.0 0.067 13.3 0.0 1.7 1 0 0 1 1 1 0 RNA helicase AAA_23 PF13476.1 gi|257388313|ref|YP_003178086.1| - 0.028 14.7 0.0 0.043 14.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|257388313|ref|YP_003178086.1| - 0.045 13.6 0.2 0.17 11.7 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|257388313|ref|YP_003178086.1| - 0.067 13.0 0.0 0.34 10.8 0.0 2.0 2 0 0 2 2 2 0 AAA domain NB-ARC PF00931.17 gi|257388313|ref|YP_003178086.1| - 0.11 11.3 0.0 0.2 10.4 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_28 PF13521.1 gi|257388313|ref|YP_003178086.1| - 0.2 11.6 0.9 0.37 10.7 0.2 1.8 2 0 0 2 2 2 0 AAA domain DUF4282 PF14110.1 gi|257388314|ref|YP_003178087.1| - 0.019 15.1 0.6 0.022 14.9 0.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4282) YrvL PF14184.1 gi|257388314|ref|YP_003178087.1| - 0.052 13.3 0.0 0.063 13.0 0.0 1.1 1 0 0 1 1 1 0 Regulatory protein YrvL GFO_IDH_MocA PF01408.17 gi|257388315|ref|YP_003178088.1| - 1.4e-22 80.4 0.1 2.6e-22 79.6 0.1 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.12 gi|257388315|ref|YP_003178088.1| - 3.3e-13 49.4 0.7 1e-12 47.8 0.0 2.1 2 1 1 3 3 3 1 Oxidoreductase family, C-terminal alpha/beta domain F420_oxidored PF03807.12 gi|257388315|ref|YP_003178088.1| - 0.0002 21.7 0.0 0.00036 20.9 0.0 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_3 PF03447.11 gi|257388315|ref|YP_003178088.1| - 0.017 15.5 0.3 0.029 14.7 0.2 1.4 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain Semialdhyde_dh PF01118.19 gi|257388315|ref|YP_003178088.1| - 0.039 14.2 0.1 0.081 13.2 0.0 1.5 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|257388315|ref|YP_003178088.1| - 0.071 12.2 0.0 0.12 11.5 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ADH_N PF08240.7 gi|257388316|ref|YP_003178089.1| - 2.5e-09 36.8 0.0 3.9e-09 36.2 0.0 1.3 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|257388316|ref|YP_003178089.1| - 0.0008 18.9 0.0 0.0013 18.2 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Regulator_TrmB PF11495.3 gi|257388317|ref|YP_003178090.1| - 9e-62 208.0 0.1 1.2e-61 207.6 0.1 1.2 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.14 gi|257388317|ref|YP_003178090.1| - 1.5e-18 66.2 0.0 3.6e-18 65.0 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|257388317|ref|YP_003178090.1| - 2.7e-05 23.8 0.0 6.2e-05 22.7 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|257388317|ref|YP_003178090.1| - 5.4e-05 22.7 0.1 0.00025 20.6 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.5 gi|257388317|ref|YP_003178090.1| - 0.00075 19.0 0.0 0.0017 17.8 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|257388317|ref|YP_003178090.1| - 0.00078 19.0 0.0 0.002 17.7 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|257388317|ref|YP_003178090.1| - 0.0072 15.6 0.0 0.019 14.3 0.0 1.7 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding Rrf2 PF02082.15 gi|257388317|ref|YP_003178090.1| - 0.014 15.5 0.0 0.035 14.2 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator DUF2250 PF10007.4 gi|257388317|ref|YP_003178090.1| - 0.083 12.8 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) TFIIE_alpha PF02002.12 gi|257388317|ref|YP_003178090.1| - 0.095 12.2 0.0 0.16 11.4 0.0 1.3 1 0 0 1 1 1 0 TFIIE alpha subunit Glycos_transf_2 PF00535.21 gi|257388318|ref|YP_003178091.1| - 5e-23 81.6 0.0 6.2e-23 81.3 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|257388318|ref|YP_003178091.1| - 2e-06 27.7 0.4 2.3e-06 27.5 0.3 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Gluconate_2-dh3 PF13618.1 gi|257388319|ref|YP_003178092.1| - 1e-13 51.5 0.0 1.2e-13 51.2 0.0 1.1 1 0 0 1 1 1 1 Gluconate 2-dehydrogenase subunit 3 PMT_2 PF13231.1 gi|257388320|ref|YP_003178093.1| - 1.9e-11 44.1 7.1 1.9e-11 44.1 4.9 2.6 3 0 0 3 3 3 1 Dolichyl-phosphate-mannose-protein mannosyltransferase ABC_tran PF00005.22 gi|257388321|ref|YP_003178094.1| - 7e-36 123.5 0.0 1.2e-35 122.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.5 gi|257388321|ref|YP_003178094.1| - 5e-10 39.2 0.1 2e-09 37.2 0.0 2.1 1 0 0 1 1 1 1 TOBE domain AAA_21 PF13304.1 gi|257388321|ref|YP_003178094.1| - 4.6e-07 30.0 0.0 0.0015 18.5 0.0 2.2 1 1 1 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|257388321|ref|YP_003178094.1| - 0.00047 20.2 0.2 0.00092 19.2 0.2 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.24 gi|257388321|ref|YP_003178094.1| - 0.0024 18.0 0.2 0.025 14.7 0.2 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Rad17 PF03215.10 gi|257388321|ref|YP_003178094.1| - 0.0025 16.5 0.0 0.0036 16.0 0.0 1.2 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA_22 PF13401.1 gi|257388321|ref|YP_003178094.1| - 0.0057 16.8 1.2 0.036 14.2 0.8 2.0 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.1 gi|257388321|ref|YP_003178094.1| - 0.0066 16.3 0.2 0.086 12.7 0.2 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_33 PF13671.1 gi|257388321|ref|YP_003178094.1| - 0.01 15.6 0.9 0.18 11.6 0.7 2.4 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|257388321|ref|YP_003178094.1| - 0.028 13.6 0.0 0.048 12.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_15 PF13175.1 gi|257388321|ref|YP_003178094.1| - 0.031 13.3 0.0 0.11 11.5 0.0 1.7 2 0 0 2 2 2 0 AAA ATPase domain AAA_28 PF13521.1 gi|257388321|ref|YP_003178094.1| - 0.053 13.4 0.5 0.75 9.7 0.1 2.4 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|257388321|ref|YP_003178094.1| - 0.068 12.9 0.0 0.16 11.7 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain NB-ARC PF00931.17 gi|257388321|ref|YP_003178094.1| - 0.12 11.2 0.0 0.17 10.7 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain NACHT PF05729.7 gi|257388321|ref|YP_003178094.1| - 0.16 11.6 0.1 0.3 10.7 0.1 1.4 1 0 0 1 1 1 0 NACHT domain BPD_transp_1 PF00528.17 gi|257388322|ref|YP_003178095.1| - 1.2e-27 96.6 30.5 5.8e-17 61.8 6.9 3.4 2 2 2 4 4 4 2 Binding-protein-dependent transport system inner membrane component DUF2636 PF11120.3 gi|257388322|ref|YP_003178095.1| - 5.9 6.4 9.4 7.4 6.1 0.0 4.0 4 1 1 5 5 5 0 Protein of unknown function (DUF2636) SBP_bac_6 PF13343.1 gi|257388323|ref|YP_003178096.1| - 1.3e-14 54.1 0.0 1.9e-14 53.5 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|257388323|ref|YP_003178096.1| - 1.4e-12 47.9 0.9 1.8e-12 47.5 0.6 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|257388323|ref|YP_003178096.1| - 4.4e-10 39.5 1.9 6.2e-10 39.1 1.3 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|257388323|ref|YP_003178096.1| - 7.1e-07 29.2 0.5 2.2e-06 27.6 0.4 1.7 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.4 gi|257388323|ref|YP_003178096.1| - 0.042 13.8 4.0 0.13 12.3 2.8 1.9 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence RGP PF03214.8 gi|257388324|ref|YP_003178097.1| - 4.4e-15 55.2 0.0 6.5e-15 54.7 0.0 1.2 1 0 0 1 1 1 1 Reversibly glycosylated polypeptide Phage-tail_1 PF09097.5 gi|257388324|ref|YP_003178097.1| - 0.15 11.5 0.0 0.25 10.8 0.0 1.3 1 0 0 1 1 1 0 Baseplate structural protein, domain 1 DUF434 PF04256.7 gi|257388325|ref|YP_003178098.1| - 0.0084 15.4 0.1 0.0093 15.3 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF434) adh_short PF00106.20 gi|257388326|ref|YP_003178099.1| - 3.1e-41 141.0 1.0 3.9e-41 140.7 0.7 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|257388326|ref|YP_003178099.1| - 4.9e-24 85.4 0.1 5.7e-24 85.2 0.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|257388326|ref|YP_003178099.1| - 3e-23 82.3 0.4 4.1e-23 81.9 0.3 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|257388326|ref|YP_003178099.1| - 0.00036 20.0 0.3 0.00048 19.6 0.2 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3HCDH_N PF02737.13 gi|257388326|ref|YP_003178099.1| - 0.14 11.7 1.0 0.22 11.1 0.4 1.4 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_10 PF13460.1 gi|257388326|ref|YP_003178099.1| - 0.18 11.7 2.8 0.58 10.1 2.0 1.8 1 1 0 1 1 1 0 NADH(P)-binding Carboxyl_trans PF01039.17 gi|257388327|ref|YP_003178100.1| - 3.5e-198 658.9 0.0 3.9e-198 658.7 0.0 1.0 1 0 0 1 1 1 1 Carboxyl transferase domain MdcE PF06833.6 gi|257388327|ref|YP_003178100.1| - 0.00025 20.3 0.0 0.00073 18.8 0.0 1.7 2 0 0 2 2 2 1 Malonate decarboxylase gamma subunit (MdcE) DUF4410 PF14366.1 gi|257388328|ref|YP_003178101.1| - 0.015 15.0 0.4 0.021 14.5 0.3 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4410) N36 PF11438.3 gi|257388328|ref|YP_003178101.1| - 2.1 7.9 6.6 2.1 7.9 3.0 2.0 2 0 0 2 2 2 0 36-mer N-terminal peptide of the N protein (N36) ACC_epsilon PF13822.1 gi|257388328|ref|YP_003178101.1| - 3.7 7.9 12.4 2.8 8.3 6.7 2.2 1 1 1 2 2 2 0 Acyl-CoA carboxylase epsilon subunit OAD_gamma PF04277.8 gi|257388328|ref|YP_003178101.1| - 8.3 6.8 7.8 0.38 11.1 1.3 1.8 1 1 1 2 2 2 0 Oxaloacetate decarboxylase, gamma chain Stc1 PF12898.2 gi|257388329|ref|YP_003178102.1| - 6.7e-05 22.8 0.4 7.8e-05 22.6 0.3 1.1 1 0 0 1 1 1 1 Stc1 domain zinc_ribbon_5 PF13719.1 gi|257388329|ref|YP_003178102.1| - 0.00019 20.9 0.7 0.00045 19.7 0.5 1.6 1 1 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|257388329|ref|YP_003178102.1| - 0.00041 19.9 0.8 0.0011 18.6 0.5 1.6 1 1 0 1 1 1 1 zinc-ribbon domain zinc-ribbons_6 PF07191.7 gi|257388329|ref|YP_003178102.1| - 0.015 15.0 1.7 0.047 13.4 1.2 1.7 1 1 0 1 1 1 0 zinc-ribbons zf-PHD-like PF15446.1 gi|257388329|ref|YP_003178102.1| - 0.03 13.6 0.2 0.03 13.5 0.2 1.0 1 0 0 1 1 1 0 PHD/FYVE-zinc-finger like domain FdhE PF04216.7 gi|257388329|ref|YP_003178102.1| - 0.032 13.9 0.2 0.038 13.6 0.2 1.1 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation NMD3 PF04981.8 gi|257388329|ref|YP_003178102.1| - 0.032 13.3 0.4 0.032 13.3 0.3 1.0 1 0 0 1 1 1 0 NMD3 family HypA PF01155.14 gi|257388329|ref|YP_003178102.1| - 0.054 13.1 0.3 0.059 13.0 0.2 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Nudix_N_2 PF14803.1 gi|257388329|ref|YP_003178102.1| - 0.081 12.6 2.1 0.14 11.8 1.5 1.3 1 0 0 1 1 1 0 Nudix N-terminal zf-H2C2_2 PF13465.1 gi|257388329|ref|YP_003178102.1| - 0.095 13.0 2.0 1 9.7 0.1 2.2 2 0 0 2 2 2 0 Zinc-finger double domain Zn_Tnp_IS1595 PF12760.2 gi|257388329|ref|YP_003178102.1| - 0.13 12.1 1.8 0.22 11.3 1.2 1.4 1 1 0 1 1 1 0 Transposase zinc-ribbon domain zf-TFIIB PF13453.1 gi|257388329|ref|YP_003178102.1| - 0.16 11.1 1.8 0.26 10.4 1.2 1.4 1 0 0 1 1 1 0 Transcription factor zinc-finger PhnA_Zn_Ribbon PF08274.7 gi|257388329|ref|YP_003178102.1| - 0.18 11.6 4.1 0.66 9.8 0.8 2.1 2 0 0 2 2 2 0 PhnA Zinc-Ribbon Zn_Tnp_IS1 PF03811.8 gi|257388329|ref|YP_003178102.1| - 0.22 11.0 4.2 0.66 9.5 2.9 1.7 1 1 0 1 1 1 0 InsA N-terminal domain UPF0547 PF10571.4 gi|257388329|ref|YP_003178102.1| - 0.24 11.1 1.9 1.5 8.6 1.3 2.0 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 OrfB_Zn_ribbon PF07282.6 gi|257388329|ref|YP_003178102.1| - 0.33 10.6 1.4 0.75 9.4 1.0 1.5 1 1 1 2 2 2 0 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.5 gi|257388329|ref|YP_003178102.1| - 0.54 10.2 2.7 6.7 6.7 0.0 2.3 2 1 0 2 2 2 0 Zinc ribbon domain Thiolase_C PF02803.13 gi|257388330|ref|YP_003178103.1| - 1.9e-08 33.7 0.1 3.6e-08 32.8 0.1 1.4 1 0 0 1 1 1 1 Thiolase, C-terminal domain Thiolase_N PF00108.18 gi|257388330|ref|YP_003178103.1| - 0.0021 17.1 0.0 0.0074 15.3 0.0 1.9 2 0 0 2 2 2 1 Thiolase, N-terminal domain Ketoacyl-synt_C PF02801.17 gi|257388330|ref|YP_003178103.1| - 0.033 14.0 0.1 5.7 6.8 0.0 3.2 3 0 0 3 3 3 0 Beta-ketoacyl synthase, C-terminal domain DUF35 PF01796.12 gi|257388331|ref|YP_003178104.1| - 2.6e-07 30.7 4.2 3.8e-07 30.2 2.9 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain zf-ribbon_3 PF13248.1 gi|257388331|ref|YP_003178104.1| - 0.0013 17.8 1.5 0.0023 17.1 1.0 1.4 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|257388331|ref|YP_003178104.1| - 0.075 12.8 0.2 0.12 12.2 0.1 1.3 1 0 0 1 1 1 0 Double zinc ribbon DNA_ligase_ZBD PF03119.11 gi|257388331|ref|YP_003178104.1| - 0.097 12.3 2.0 3.8 7.2 0.4 2.7 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zinc_ribbon_2 PF13240.1 gi|257388331|ref|YP_003178104.1| - 0.12 11.8 1.8 0.19 11.2 1.2 1.4 1 0 0 1 1 1 0 zinc-ribbon domain Zn_Tnp_IS91 PF14319.1 gi|257388331|ref|YP_003178104.1| - 0.14 11.6 0.1 0.19 11.2 0.1 1.2 1 0 0 1 1 1 0 Transposase zinc-binding domain NETI PF14044.1 gi|257388332|ref|YP_003178105.1| - 0.15 11.6 0.0 0.31 10.5 0.0 1.5 1 0 0 1 1 1 0 NETI protein TPR_14 PF13428.1 gi|257388333|ref|YP_003178106.1| - 0.028 15.0 3.6 0.45 11.2 0.4 2.7 2 0 0 2 2 2 0 Tetratricopeptide repeat DUF948 PF06103.6 gi|257388333|ref|YP_003178106.1| - 0.095 12.5 0.1 0.33 10.8 0.0 1.9 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) H-kinase_dim PF02895.9 gi|257388333|ref|YP_003178106.1| - 0.47 10.8 4.5 0.84 10.0 1.5 2.5 2 1 0 2 2 2 0 Signal transducing histidine kinase, homodimeric domain DUF4164 PF13747.1 gi|257388333|ref|YP_003178106.1| - 0.64 10.1 9.5 10 6.3 0.0 3.3 3 1 0 3 3 3 0 Domain of unknown function (DUF4164) Ferritin PF00210.19 gi|257388335|ref|YP_003178108.1| - 1.1e-28 99.7 3.6 1.3e-28 99.5 2.5 1.0 1 0 0 1 1 1 1 Ferritin-like domain DUF2383 PF09537.5 gi|257388335|ref|YP_003178108.1| - 0.0025 18.0 0.8 0.042 14.0 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF2383) Tautomerase PF01361.16 gi|257388335|ref|YP_003178108.1| - 0.043 13.4 0.1 0.2 11.2 0.0 2.0 2 0 0 2 2 2 0 Tautomerase enzyme DUF892 PF05974.7 gi|257388335|ref|YP_003178108.1| - 0.045 13.5 2.6 0.082 12.7 1.4 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF892) Med9 PF07544.8 gi|257388336|ref|YP_003178109.1| - 0.14 11.8 0.0 0.22 11.2 0.0 1.3 1 0 0 1 1 1 0 RNA polymerase II transcription mediator complex subunit 9 ATP-grasp_5 PF13549.1 gi|257388337|ref|YP_003178110.1| - 6.6e-73 244.5 0.7 1.1e-72 243.9 0.1 1.6 2 0 0 2 2 2 1 ATP-grasp domain Succ_CoA_lig PF13607.1 gi|257388337|ref|YP_003178110.1| - 1e-51 174.1 1.1 2.4e-51 172.9 0.2 2.1 2 0 0 2 2 2 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|257388337|ref|YP_003178110.1| - 5.3e-20 71.7 1.8 8.7e-20 71.0 0.3 2.2 2 0 0 2 2 2 1 CoA binding domain CoA_binding PF02629.14 gi|257388337|ref|YP_003178110.1| - 2.2e-14 53.7 1.9 8.8e-14 51.7 1.3 2.2 1 0 0 1 1 1 1 CoA binding domain ATP-grasp_2 PF08442.5 gi|257388337|ref|YP_003178110.1| - 2.2e-05 23.9 0.0 8.2e-05 22.0 0.0 2.0 1 1 0 1 1 1 1 ATP-grasp domain GFO_IDH_MocA PF01408.17 gi|257388337|ref|YP_003178110.1| - 0.0086 16.5 1.2 0.028 14.9 0.1 2.3 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold AAA_26 PF13500.1 gi|257388338|ref|YP_003178111.1| - 5.2e-34 117.6 0.0 2.1e-33 115.6 0.0 1.8 2 0 0 2 2 2 1 AAA domain DRTGG PF07085.7 gi|257388338|ref|YP_003178111.1| - 1.2e-27 95.5 0.2 4.2e-26 90.5 0.0 2.6 2 1 1 3 3 3 1 DRTGG domain CbiA PF01656.18 gi|257388338|ref|YP_003178111.1| - 1.3e-07 31.1 0.1 2.1e-07 30.5 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain IstB_IS21 PF01695.12 gi|257388338|ref|YP_003178111.1| - 0.0086 15.5 0.0 0.015 14.7 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_26 PF13500.1 gi|257388339|ref|YP_003178112.1| - 2.8e-38 131.5 0.0 3.4e-38 131.2 0.0 1.0 1 0 0 1 1 1 1 AAA domain CbiA PF01656.18 gi|257388339|ref|YP_003178112.1| - 3e-05 23.5 0.7 8.6e-05 22.0 0.5 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain DUF1611 PF07755.6 gi|257388339|ref|YP_003178112.1| - 0.00061 18.5 2.4 0.011 14.3 0.3 2.5 3 0 0 3 3 3 2 Protein of unknown function (DUF1611) MobB PF03205.9 gi|257388339|ref|YP_003178112.1| - 0.087 12.5 0.0 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B Aminotran_1_2 PF00155.16 gi|257388340|ref|YP_003178113.1| - 1.5e-55 188.6 0.0 1.7e-55 188.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.15 gi|257388340|ref|YP_003178113.1| - 0.00093 17.5 0.0 0.0015 16.8 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|257388340|ref|YP_003178113.1| - 0.0093 15.0 2.5 0.08 11.9 1.7 2.1 1 1 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Flg_hook PF02120.11 gi|257388340|ref|YP_003178113.1| - 0.1 12.2 0.1 6.4 6.5 0.0 2.4 2 0 0 2 2 2 0 Flagellar hook-length control protein FliK GFO_IDH_MocA PF01408.17 gi|257388341|ref|YP_003178114.1| - 0.00027 21.4 1.9 0.49 10.9 0.0 3.0 4 0 0 4 4 4 2 Oxidoreductase family, NAD-binding Rossmann fold ELFV_dehydrog PF00208.16 gi|257388341|ref|YP_003178114.1| - 0.0003 20.4 0.1 0.00064 19.3 0.0 1.6 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Saccharop_dh PF03435.13 gi|257388341|ref|YP_003178114.1| - 0.00032 19.7 0.5 0.0092 14.9 0.0 2.2 2 0 0 2 2 2 2 Saccharopine dehydrogenase BATS PF06968.8 gi|257388342|ref|YP_003178115.1| - 4.1e-23 81.0 0.0 1.3e-22 79.4 0.0 1.8 2 0 0 2 2 2 1 Biotin and Thiamin Synthesis associated domain Radical_SAM PF04055.16 gi|257388342|ref|YP_003178115.1| - 8.4e-15 55.3 0.2 8.3e-14 52.1 0.0 2.1 2 0 0 2 2 2 1 Radical SAM superfamily ThiC PF01964.13 gi|257388343|ref|YP_003178116.1| - 6.5e-197 654.1 0.0 7.6e-197 653.9 0.0 1.0 1 0 0 1 1 1 1 ThiC family zf-ribbon_3 PF13248.1 gi|257388343|ref|YP_003178116.1| - 0.029 13.5 0.3 0.057 12.6 0.2 1.5 1 0 0 1 1 1 0 zinc-ribbon domain Nup84_Nup100 PF04121.8 gi|257388344|ref|YP_003178117.1| - 0.23 9.0 0.0 0.32 8.6 0.0 1.1 1 0 0 1 1 1 0 Nuclear pore protein 84 / 107 KaiC PF06745.8 gi|257388345|ref|YP_003178118.1| - 1.3e-09 37.5 0.0 7.5e-07 28.4 0.0 2.1 1 1 0 1 1 1 1 KaiC CbiA PF01656.18 gi|257388346|ref|YP_003178119.1| - 5.4e-22 78.1 0.0 7.2e-22 77.7 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.4 gi|257388346|ref|YP_003178119.1| - 6.5e-06 25.9 0.1 1e-05 25.3 0.1 1.2 1 0 0 1 1 1 1 ParA/MinD ATPase like MipZ PF09140.6 gi|257388346|ref|YP_003178119.1| - 7.3e-05 21.9 0.0 0.00011 21.3 0.0 1.3 1 0 0 1 1 1 1 ATPase MipZ AAA_31 PF13614.1 gi|257388346|ref|YP_003178119.1| - 0.00023 21.1 0.0 0.029 14.3 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_26 PF13500.1 gi|257388346|ref|YP_003178119.1| - 0.0017 18.0 1.9 0.93 9.0 0.0 2.6 2 1 0 2 2 2 2 AAA domain AAA_10 PF12846.2 gi|257388346|ref|YP_003178119.1| - 0.0063 15.9 0.1 0.033 13.6 0.0 1.9 2 1 1 3 3 3 1 AAA-like domain YhjQ PF06564.7 gi|257388346|ref|YP_003178119.1| - 0.012 15.0 1.4 0.98 8.7 1.0 2.2 1 1 0 1 1 1 0 YhjQ protein ArsA_ATPase PF02374.10 gi|257388346|ref|YP_003178119.1| - 0.051 12.6 1.0 0.051 12.6 0.7 1.8 2 0 0 2 2 2 0 Anion-transporting ATPase VirC1 PF07015.6 gi|257388346|ref|YP_003178119.1| - 0.11 11.4 0.8 9.5 5.2 0.0 2.1 2 0 0 2 2 2 0 VirC1 protein AAA_19 PF13245.1 gi|257388346|ref|YP_003178119.1| - 0.67 9.7 9.1 0.31 10.8 0.3 2.5 2 0 0 2 2 2 0 Part of AAA domain OTCace_N PF02729.16 gi|257388347|ref|YP_003178120.1| - 1.2e-43 148.1 0.0 2.8e-43 146.9 0.0 1.6 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.19 gi|257388347|ref|YP_003178120.1| - 3.1e-36 124.6 0.0 5e-36 123.9 0.0 1.3 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain PyrI PF01948.13 gi|257388348|ref|YP_003178121.1| - 1.5e-36 124.3 0.2 1.9e-36 123.9 0.2 1.1 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.10 gi|257388348|ref|YP_003178121.1| - 1.3e-17 62.9 0.3 2.4e-17 62.1 0.2 1.5 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain DUF4010 PF13194.1 gi|257388349|ref|YP_003178122.1| - 0.03 13.6 0.0 0.039 13.2 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4010) SKG6 PF08693.5 gi|257388349|ref|YP_003178122.1| - 0.073 12.3 1.6 0.16 11.2 1.1 1.6 1 0 0 1 1 1 0 Transmembrane alpha-helix domain S1 PF00575.18 gi|257388349|ref|YP_003178122.1| - 0.1 12.7 0.0 0.29 11.2 0.0 1.9 1 1 0 1 1 1 0 S1 RNA binding domain EphA2_TM PF14575.1 gi|257388349|ref|YP_003178122.1| - 0.13 12.6 0.0 0.18 12.2 0.0 1.2 1 0 0 1 1 1 0 Ephrin type-A receptor 2 transmembrane domain FKBP_C PF00254.23 gi|257388350|ref|YP_003178123.1| - 8.9e-08 32.0 0.2 2.3e-07 30.7 0.1 1.7 1 0 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase CYTH PF01928.16 gi|257388351|ref|YP_003178124.1| - 4.8e-43 146.9 3.5 5.4e-43 146.8 2.4 1.0 1 0 0 1 1 1 1 CYTH domain AdoMet_Synthase PF01941.14 gi|257388352|ref|YP_003178125.1| - 6.2e-178 591.2 4.9 7.1e-178 591.1 3.4 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) ThiI PF02568.9 gi|257388353|ref|YP_003178126.1| - 7.5e-42 143.0 0.0 1.1e-41 142.5 0.0 1.2 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.12 gi|257388353|ref|YP_003178126.1| - 5.3e-16 58.8 0.0 8.8e-16 58.0 0.0 1.4 1 0 0 1 1 1 1 THUMP domain tRNA_Me_trans PF03054.11 gi|257388353|ref|YP_003178126.1| - 0.00092 17.8 0.0 0.0013 17.3 0.0 1.2 1 0 0 1 1 1 1 tRNA methyl transferase QueC PF06508.8 gi|257388353|ref|YP_003178126.1| - 0.015 14.5 0.0 0.21 10.8 0.0 2.1 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC Asn_synthase PF00733.16 gi|257388353|ref|YP_003178126.1| - 0.035 13.6 0.0 0.063 12.7 0.0 1.4 1 0 0 1 1 1 0 Asparagine synthase DUF3515 PF12028.3 gi|257388355|ref|YP_003178128.1| - 0.052 12.7 0.4 0.24 10.6 0.0 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF3515) PALP PF00291.20 gi|257388356|ref|YP_003178129.1| - 6.2e-59 199.7 2.1 7.6e-59 199.4 1.5 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme PAS_4 PF08448.5 gi|257388356|ref|YP_003178129.1| - 0.089 12.8 0.0 0.21 11.6 0.0 1.6 1 0 0 1 1 1 0 PAS fold Thioredoxin PF00085.15 gi|257388357|ref|YP_003178130.1| - 0.00058 19.4 0.0 0.00086 18.9 0.0 1.3 1 1 0 1 1 1 1 Thioredoxin Thioredoxin_9 PF14595.1 gi|257388357|ref|YP_003178130.1| - 0.035 13.6 0.0 0.057 12.9 0.0 1.4 1 1 0 1 1 1 0 Thioredoxin Thioredoxin_2 PF13098.1 gi|257388357|ref|YP_003178130.1| - 0.049 13.8 0.1 0.14 12.3 0.1 1.7 1 1 0 1 1 1 0 Thioredoxin-like domain AhpC-TSA PF00578.16 gi|257388357|ref|YP_003178130.1| - 0.068 12.8 0.0 0.078 12.6 0.0 1.4 1 1 0 1 1 1 0 AhpC/TSA family UPF0126 PF03458.8 gi|257388358|ref|YP_003178131.1| - 1.7e-33 114.1 28.6 4.4e-19 67.8 7.1 2.5 2 1 0 2 2 2 2 UPF0126 domain DUF1469 PF07332.6 gi|257388359|ref|YP_003178132.1| - 2 8.1 14.6 2.4 7.8 10.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) DUF4131 PF13567.1 gi|257388359|ref|YP_003178132.1| - 5.1 6.4 9.2 5.8 6.2 6.4 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) Thioredox_DsbH PF03190.10 gi|257388360|ref|YP_003178133.1| - 2.4e-72 242.0 0.0 4.4e-72 241.1 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.1 gi|257388360|ref|YP_003178133.1| - 1e-11 44.7 0.2 3.5e-11 42.9 0.0 2.1 2 0 0 2 2 2 1 Thioredoxin-like GlcNAc_2-epim PF07221.6 gi|257388360|ref|YP_003178133.1| - 0.00018 20.6 0.0 0.12 11.4 0.0 2.5 2 0 0 2 2 2 2 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) Thioredoxin_2 PF13098.1 gi|257388360|ref|YP_003178133.1| - 0.0059 16.7 0.0 0.012 15.7 0.0 1.5 1 0 0 1 1 1 1 Thioredoxin-like domain TAT_signal PF10518.4 gi|257388361|ref|YP_003178134.1| - 0.082 12.9 4.9 0.17 11.9 3.4 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence zf-CXXC PF02008.15 gi|257388361|ref|YP_003178134.1| - 1.6 8.6 5.4 6.4 6.6 0.3 2.6 2 0 0 2 2 2 0 CXXC zinc finger domain GARS_A PF01071.14 gi|257388362|ref|YP_003178135.1| - 1.6e-52 177.9 0.0 2.7e-52 177.1 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.10 gi|257388362|ref|YP_003178135.1| - 6.5e-25 87.5 0.1 1.3e-24 86.5 0.1 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, N domain ATP-grasp_4 PF13535.1 gi|257388362|ref|YP_003178135.1| - 7.6e-22 77.9 0.1 3.5e-21 75.7 0.0 1.9 2 0 0 2 2 2 1 ATP-grasp domain GARS_C PF02843.11 gi|257388362|ref|YP_003178135.1| - 3e-16 59.3 8.5 1.5e-15 57.1 1.6 3.6 3 1 0 3 3 3 1 Phosphoribosylglycinamide synthetase, C domain ATPgrasp_Ter PF15632.1 gi|257388362|ref|YP_003178135.1| - 3.7e-08 32.4 0.0 1e-07 31.0 0.0 1.7 2 0 0 2 2 2 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.9 gi|257388362|ref|YP_003178135.1| - 2.1e-06 27.7 0.0 3.3e-06 27.0 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|257388362|ref|YP_003178135.1| - 0.066 12.4 0.0 0.15 11.3 0.0 1.6 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain Hexapep PF00132.19 gi|257388363|ref|YP_003178136.1| - 4.3e-11 41.7 6.4 1.1e-09 37.3 2.9 3.0 3 0 0 3 3 3 1 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|257388363|ref|YP_003178136.1| - 1.1e-08 34.4 5.6 2.7e-07 30.0 2.3 3.0 3 0 0 3 3 3 1 Hexapeptide repeat of succinyl-transferase NRDE PF05742.7 gi|257388364|ref|YP_003178137.1| - 2.8e-23 82.6 0.0 5.3e-22 78.4 0.0 2.0 1 1 0 1 1 1 1 NRDE protein AAT PF03417.11 gi|257388364|ref|YP_003178137.1| - 0.021 14.2 0.0 0.029 13.8 0.0 1.2 1 0 0 1 1 1 0 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase MarR PF01047.17 gi|257388365|ref|YP_003178138.1| - 5.1e-06 26.0 0.0 7.2e-06 25.6 0.0 1.2 1 0 0 1 1 1 1 MarR family B-block_TFIIIC PF04182.7 gi|257388365|ref|YP_003178138.1| - 0.00055 19.7 0.0 0.0007 19.3 0.0 1.2 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC MarR_2 PF12802.2 gi|257388365|ref|YP_003178138.1| - 0.011 15.3 0.0 0.019 14.6 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_27 PF13463.1 gi|257388365|ref|YP_003178138.1| - 0.02 15.2 0.0 0.026 14.8 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain TrmB PF01978.14 gi|257388365|ref|YP_003178138.1| - 0.042 13.5 0.0 0.052 13.2 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF4140 PF13600.1 gi|257388366|ref|YP_003178139.1| - 3 8.3 6.4 1.4 9.3 0.2 2.1 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) Cwf_Cwc_15 PF04889.7 gi|257388366|ref|YP_003178139.1| - 3.7 7.1 17.1 0.4 10.3 6.5 2.0 2 0 0 2 2 2 0 Cwf15/Cwc15 cell cycle control protein ABG_transport PF03806.8 gi|257388367|ref|YP_003178140.1| - 0.0037 15.3 0.0 0.0043 15.1 0.0 1.0 1 0 0 1 1 1 1 AbgT putative transporter family DUF1980 PF09323.5 gi|257388367|ref|YP_003178140.1| - 0.031 14.0 1.6 0.045 13.5 1.1 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1980) DUF805 PF05656.9 gi|257388367|ref|YP_003178140.1| - 1.2 8.9 4.8 1.6 8.6 3.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF805) CARDB PF07705.6 gi|257388368|ref|YP_003178141.1| - 0.0016 18.4 0.1 0.0074 16.3 0.0 2.1 1 1 1 2 2 2 1 CARDB Glyco_hydro_2 PF00703.16 gi|257388368|ref|YP_003178141.1| - 0.012 16.0 0.5 5.6 7.4 0.0 2.6 2 0 0 2 2 2 0 Glycosyl hydrolases family 2 HCBP_related PF06594.6 gi|257388368|ref|YP_003178141.1| - 0.02 14.5 0.1 5.1 6.8 0.0 2.5 2 0 0 2 2 2 0 Haemolysin-type calcium binding protein related domain Transglut_C PF00927.17 gi|257388368|ref|YP_003178141.1| - 0.042 13.9 0.0 0.13 12.3 0.0 1.7 2 0 0 2 2 2 0 Transglutaminase family, C-terminal ig like domain TRAP_beta PF05753.9 gi|257388368|ref|YP_003178141.1| - 0.07 12.2 0.0 0.12 11.5 0.0 1.3 1 0 0 1 1 1 0 Translocon-associated protein beta (TRAPB) DUF4345 PF14248.1 gi|257388369|ref|YP_003178142.1| - 0.031 13.7 6.6 0.2 11.0 2.8 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4345) DUF2797 PF10977.3 gi|257388370|ref|YP_003178143.1| - 1.4e-44 152.5 3.2 1.9e-43 148.7 2.2 1.9 1 1 0 1 1 1 1 Protein of unknown function (DUF2797) Thioredoxin_4 PF13462.1 gi|257388371|ref|YP_003178144.1| - 4.4e-34 117.8 0.0 5.7e-34 117.4 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin DSBA PF01323.15 gi|257388371|ref|YP_003178144.1| - 1.9e-08 34.0 2.2 5.2e-06 26.1 1.5 2.1 1 1 0 1 1 1 1 DSBA-like thioredoxin domain Thioredoxin_2 PF13098.1 gi|257388371|ref|YP_003178144.1| - 0.00023 21.3 0.0 0.0011 19.1 0.0 1.9 1 1 0 1 1 1 1 Thioredoxin-like domain TAT_signal PF10518.4 gi|257388371|ref|YP_003178144.1| - 0.071 13.1 2.3 0.071 13.1 1.6 1.8 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence PaRep2b PF07775.6 gi|257388371|ref|YP_003178144.1| - 0.085 11.0 0.0 0.1 10.7 0.0 1.1 1 0 0 1 1 1 0 PaRep2b protein Trm56 PF01994.11 gi|257388372|ref|YP_003178145.1| - 2.8e-44 149.7 0.0 3.6e-44 149.3 0.0 1.1 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 ThuA PF06283.6 gi|257388373|ref|YP_003178146.1| - 2.6e-45 154.7 0.1 3e-45 154.5 0.1 1.0 1 0 0 1 1 1 1 Trehalose utilisation PsiE PF06146.7 gi|257388374|ref|YP_003178147.1| - 6.5e-13 48.7 6.9 6.5e-13 48.7 4.8 1.8 2 0 0 2 2 2 1 Phosphate-starvation-inducible E RhodobacterPufX PF11511.3 gi|257388374|ref|YP_003178147.1| - 0.0021 17.4 1.0 0.064 12.6 0.1 2.5 2 0 0 2 2 2 1 Intrinsic membrane protein PufX DUF1129 PF06570.6 gi|257388374|ref|YP_003178147.1| - 0.18 11.0 1.0 0.26 10.5 0.7 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) MerC PF03203.9 gi|257388374|ref|YP_003178147.1| - 0.41 11.0 3.6 0.2 12.0 0.8 1.7 1 1 1 2 2 2 0 MerC mercury resistance protein Tetraspannin PF00335.15 gi|257388374|ref|YP_003178147.1| - 1.3 8.2 4.9 0.28 10.4 0.1 1.9 1 1 1 2 2 2 0 Tetraspanin family DUF2177 PF09945.4 gi|257388374|ref|YP_003178147.1| - 4.8 7.1 7.7 11 6.0 2.3 2.3 1 1 1 2 2 2 0 Predicted membrane protein (DUF2177) GSDH PF07995.6 gi|257388375|ref|YP_003178148.1| - 3.3e-75 253.2 0.0 4.3e-75 252.8 0.0 1.1 1 0 0 1 1 1 1 Glucose / Sorbosone dehydrogenase TAT_signal PF10518.4 gi|257388375|ref|YP_003178148.1| - 0.08 12.9 2.6 0.26 11.3 1.8 2.0 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence TFIIE_alpha PF02002.12 gi|257388376|ref|YP_003178149.1| - 5.7e-21 74.0 0.9 9.2e-21 73.3 0.1 1.7 2 0 0 2 2 2 1 TFIIE alpha subunit Sigma70_r3 PF04539.11 gi|257388376|ref|YP_003178149.1| - 0.0019 18.0 0.5 0.0057 16.5 0.0 2.1 2 0 0 2 2 2 1 Sigma-70 region 3 HypA PF01155.14 gi|257388376|ref|YP_003178149.1| - 0.023 14.3 0.3 0.038 13.6 0.2 1.3 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family Zn-ribbon_8 PF09723.5 gi|257388376|ref|YP_003178149.1| - 0.034 14.0 3.5 0.1 12.5 2.5 1.8 1 1 0 1 1 1 0 Zinc ribbon domain DZR PF12773.2 gi|257388376|ref|YP_003178149.1| - 0.04 13.7 0.5 0.069 12.9 0.4 1.3 1 0 0 1 1 1 0 Double zinc ribbon zinc-ribbons_6 PF07191.7 gi|257388376|ref|YP_003178149.1| - 0.11 12.2 0.4 0.28 11.0 0.3 1.6 1 1 0 1 1 1 0 zinc-ribbons PhnA_Zn_Ribbon PF08274.7 gi|257388376|ref|YP_003178149.1| - 0.12 12.1 1.5 8.6 6.2 0.0 2.3 2 0 0 2 2 2 0 PhnA Zinc-Ribbon TF_Zn_Ribbon PF08271.7 gi|257388376|ref|YP_003178149.1| - 0.21 10.9 6.7 3.2 7.1 0.5 2.8 1 1 0 2 2 2 0 TFIIB zinc-binding DNA_RNApol_7kD PF03604.8 gi|257388376|ref|YP_003178149.1| - 0.27 10.7 1.9 2.5 7.6 1.3 2.1 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit DUF1610 PF07754.6 gi|257388376|ref|YP_003178149.1| - 0.53 10.4 5.0 2.6 8.2 1.0 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) TFIIS_C PF01096.13 gi|257388376|ref|YP_003178149.1| - 1 9.0 4.4 6.8 6.4 0.3 2.3 1 1 1 2 2 2 0 Transcription factor S-II (TFIIS) zf-CSL PF05207.8 gi|257388376|ref|YP_003178149.1| - 1.1 8.8 7.2 5.9 6.4 5.0 2.1 1 1 0 1 1 1 0 CSL zinc finger DUF2110 PF09883.4 gi|257388377|ref|YP_003178150.1| - 2.4e-88 295.5 0.0 2.8e-88 295.3 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2110) Radical_SAM_N PF08497.5 gi|257388378|ref|YP_003178151.1| - 0.081 11.8 0.0 0.12 11.3 0.0 1.2 1 0 0 1 1 1 0 Radical SAM N-terminal MoCF_biosynth PF00994.19 gi|257388379|ref|YP_003178152.1| - 1e-33 115.7 0.1 1.4e-33 115.3 0.1 1.2 1 0 0 1 1 1 1 Probable molybdopterin binding domain DUF4044 PF13253.1 gi|257388380|ref|YP_003178153.1| - 0.098 11.8 0.7 0.15 11.2 0.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4044) NAD_kinase PF01513.16 gi|257388381|ref|YP_003178154.1| - 1.8e-49 168.0 0.1 2.3e-49 167.6 0.1 1.1 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.19 gi|257388381|ref|YP_003178154.1| - 0.00038 19.9 0.2 0.00038 19.9 0.1 2.7 4 0 0 4 4 4 1 Diacylglycerol kinase catalytic domain NAD_binding_10 PF13460.1 gi|257388381|ref|YP_003178154.1| - 0.0052 16.7 0.5 0.014 15.4 0.0 1.8 2 0 0 2 2 2 1 NADH(P)-binding Peripla_BP_6 PF13458.1 gi|257388381|ref|YP_003178154.1| - 0.0061 15.9 1.1 0.019 14.2 0.1 2.1 1 1 1 3 3 3 1 Periplasmic binding protein PrpR_N PF06506.6 gi|257388381|ref|YP_003178154.1| - 0.029 13.7 0.2 0.43 9.9 0.0 2.3 2 0 0 2 2 2 0 Propionate catabolism activator DHQ_synthase PF01761.15 gi|257388381|ref|YP_003178154.1| - 0.15 10.9 0.2 0.23 10.3 0.2 1.2 1 0 0 1 1 1 0 3-dehydroquinate synthase PhoU PF01895.14 gi|257388382|ref|YP_003178155.1| - 1e-14 54.7 4.3 9e-11 42.0 0.0 2.3 2 0 0 2 2 2 2 PhoU domain Antitoxin-MazE PF04014.13 gi|257388382|ref|YP_003178155.1| - 1.4e-07 31.0 0.0 2.8e-07 30.1 0.0 1.5 1 0 0 1 1 1 1 Antidote-toxin recognition MazE LEA_2 PF03168.8 gi|257388383|ref|YP_003178156.1| - 1.9e-18 66.7 0.4 7.5e-09 35.8 0.1 2.5 2 1 0 2 2 2 2 Late embryogenesis abundant protein DUF2776 PF10951.3 gi|257388384|ref|YP_003178157.1| - 0.37 9.7 4.8 0.44 9.5 3.4 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2776) AWPM-19 PF05512.6 gi|257388384|ref|YP_003178157.1| - 0.72 9.8 4.4 0.88 9.5 3.1 1.2 1 0 0 1 1 1 0 AWPM-19-like family Vma12 PF11712.3 gi|257388384|ref|YP_003178157.1| - 1.2 8.8 5.3 1.5 8.5 3.7 1.1 1 0 0 1 1 1 0 Endoplasmic reticulum-based factor for assembly of V-ATPase DUF1469 PF07332.6 gi|257388384|ref|YP_003178157.1| - 2.3 7.9 11.4 2.7 7.7 7.9 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) HTH_24 PF13412.1 gi|257388385|ref|YP_003178158.1| - 0.00027 20.2 1.6 0.0073 15.6 0.2 2.8 2 1 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|257388385|ref|YP_003178158.1| - 0.0024 17.3 2.8 0.014 14.9 0.6 2.7 2 1 0 2 2 2 1 AsnC-type helix-turn-helix domain LexA_DNA_bind PF01726.11 gi|257388385|ref|YP_003178158.1| - 0.0042 16.5 0.0 0.0051 16.3 0.0 1.2 1 0 0 1 1 1 1 LexA DNA binding domain FaeA PF04703.7 gi|257388385|ref|YP_003178158.1| - 0.014 15.5 0.0 0.017 15.2 0.0 1.2 1 0 0 1 1 1 0 FaeA-like protein DUF3263 PF11662.3 gi|257388385|ref|YP_003178158.1| - 0.063 12.7 0.0 0.072 12.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3263) MarR_2 PF12802.2 gi|257388385|ref|YP_003178158.1| - 0.091 12.4 0.0 0.15 11.7 0.0 1.3 1 0 0 1 1 1 0 MarR family Polyketide_cyc2 PF10604.4 gi|257388386|ref|YP_003178159.1| - 5e-13 49.4 2.3 5.8e-13 49.2 1.6 1.0 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport COXG PF06240.8 gi|257388386|ref|YP_003178159.1| - 2.7e-05 23.8 0.0 0.00013 21.6 0.0 1.8 1 1 1 2 2 2 2 Carbon monoxide dehydrogenase subunit G (CoxG) Polyketide_cyc PF03364.15 gi|257388386|ref|YP_003178159.1| - 0.029 14.3 0.3 0.042 13.8 0.2 1.3 1 1 0 1 1 1 0 Polyketide cyclase / dehydrase and lipid transport DUF2505 PF10698.4 gi|257388386|ref|YP_003178159.1| - 0.13 11.7 0.5 19 4.7 0.0 2.8 1 1 2 3 3 3 0 Protein of unknown function (DUF2505) CN_hydrolase PF00795.17 gi|257388387|ref|YP_003178160.1| - 2.5e-29 101.9 0.0 3.2e-29 101.5 0.0 1.2 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase DUF3875 PF12991.2 gi|257388387|ref|YP_003178160.1| - 0.15 11.7 0.0 12 5.6 0.0 2.4 2 0 0 2 2 2 0 Domain of unknown function, B. Theta Gene description (DUF3875) GSDH PF07995.6 gi|257388388|ref|YP_003178161.1| - 1.6e-116 389.0 0.0 1.9e-116 388.7 0.0 1.0 1 0 0 1 1 1 1 Glucose / Sorbosone dehydrogenase Aldedh PF00171.17 gi|257388389|ref|YP_003178162.1| - 4.3e-141 470.4 0.0 4.9e-141 470.2 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.9 gi|257388389|ref|YP_003178162.1| - 0.013 14.2 0.0 0.029 13.0 0.0 1.6 1 1 0 1 1 1 0 Acyl-CoA reductase (LuxC) AAA PF00004.24 gi|257388390|ref|YP_003178163.1| - 8.3e-96 317.2 0.0 9.7e-47 158.4 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.13 gi|257388390|ref|YP_003178163.1| - 7.9e-21 73.8 1.0 2.6e-20 72.1 0.3 2.2 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.7 gi|257388390|ref|YP_003178163.1| - 4.5e-16 58.6 0.1 3.7e-07 29.4 0.0 3.4 2 2 1 3 3 3 2 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|257388390|ref|YP_003178163.1| - 1.8e-14 54.1 1.9 1.4e-05 25.1 0.2 4.0 2 2 0 2 2 2 2 AAA ATPase domain AAA_22 PF13401.1 gi|257388390|ref|YP_003178163.1| - 1.7e-13 50.8 1.1 5.1e-05 23.4 0.1 4.2 2 2 0 2 2 2 2 AAA domain AAA_33 PF13671.1 gi|257388390|ref|YP_003178163.1| - 2e-13 50.4 0.0 6.4e-06 26.1 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_2 PF07724.9 gi|257388390|ref|YP_003178163.1| - 3.3e-13 49.9 0.0 6.1e-06 26.2 0.0 2.6 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_17 PF13207.1 gi|257388390|ref|YP_003178163.1| - 1.6e-12 48.2 0.2 7.8e-05 23.4 0.0 3.2 2 1 0 2 2 2 2 AAA domain AAA_19 PF13245.1 gi|257388390|ref|YP_003178163.1| - 9e-11 41.3 0.0 0.00047 19.8 0.0 3.4 2 0 0 2 2 2 2 Part of AAA domain AAA_14 PF13173.1 gi|257388390|ref|YP_003178163.1| - 3.5e-10 39.8 0.0 0.00036 20.4 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_5 PF07728.9 gi|257388390|ref|YP_003178163.1| - 1e-09 38.2 2.0 0.0022 17.7 0.2 3.9 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) TIP49 PF06068.8 gi|257388390|ref|YP_003178163.1| - 2.7e-09 36.2 0.0 0.00095 17.9 0.0 2.3 2 0 0 2 2 2 2 TIP49 C-terminus AAA_18 PF13238.1 gi|257388390|ref|YP_003178163.1| - 9.1e-09 35.7 0.0 0.0021 18.3 0.0 2.8 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.12 gi|257388390|ref|YP_003178163.1| - 1.5e-08 34.2 0.0 0.0022 17.4 0.0 2.7 2 1 0 2 2 2 2 IstB-like ATP binding protein Zeta_toxin PF06414.7 gi|257388390|ref|YP_003178163.1| - 3.7e-08 32.6 0.0 0.00025 20.2 0.0 2.6 2 0 0 2 2 2 2 Zeta toxin AAA_25 PF13481.1 gi|257388390|ref|YP_003178163.1| - 5.8e-08 32.3 9.2 0.28 10.5 0.1 4.8 2 2 2 5 5 5 4 AAA domain AAA_28 PF13521.1 gi|257388390|ref|YP_003178163.1| - 1.7e-07 31.3 0.0 0.012 15.5 0.0 2.8 2 0 0 2 2 2 2 AAA domain Sigma54_activat PF00158.21 gi|257388390|ref|YP_003178163.1| - 9.9e-07 28.3 0.0 0.093 12.1 0.0 3.6 3 1 0 3 3 3 2 Sigma-54 interaction domain Mg_chelatase PF01078.16 gi|257388390|ref|YP_003178163.1| - 1.7e-06 27.3 0.2 0.04 13.0 0.1 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.17 gi|257388390|ref|YP_003178163.1| - 3.6e-06 27.1 0.0 0.082 13.0 0.0 2.7 2 0 0 2 2 2 2 RNA helicase Sigma54_activ_2 PF14532.1 gi|257388390|ref|YP_003178163.1| - 4.2e-06 26.8 0.0 0.12 12.4 0.0 2.4 2 0 0 2 2 2 2 Sigma-54 interaction domain ABC_tran PF00005.22 gi|257388390|ref|YP_003178163.1| - 1.1e-05 25.7 0.0 0.13 12.5 0.0 2.6 2 0 0 2 2 2 2 ABC transporter NACHT PF05729.7 gi|257388390|ref|YP_003178163.1| - 1.3e-05 24.8 1.2 0.87 9.2 0.1 4.0 4 0 0 4 4 4 2 NACHT domain Parvo_NS1 PF01057.12 gi|257388390|ref|YP_003178163.1| - 1.5e-05 24.0 0.0 0.083 11.7 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 AAA_3 PF07726.6 gi|257388390|ref|YP_003178163.1| - 2.3e-05 24.0 0.0 0.085 12.4 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) DUF815 PF05673.8 gi|257388390|ref|YP_003178163.1| - 3.1e-05 23.0 0.0 0.0089 14.9 0.0 2.4 2 0 0 2 2 2 1 Protein of unknown function (DUF815) PhoH PF02562.11 gi|257388390|ref|YP_003178163.1| - 5.7e-05 22.4 0.6 0.41 9.8 0.0 2.9 3 0 0 3 3 3 2 PhoH-like protein KaiC PF06745.8 gi|257388390|ref|YP_003178163.1| - 0.00012 21.2 0.5 1.1 8.3 0.0 3.6 3 1 1 4 4 3 2 KaiC DUF2075 PF09848.4 gi|257388390|ref|YP_003178163.1| - 0.00012 21.1 0.0 0.23 10.3 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) NB-ARC PF00931.17 gi|257388390|ref|YP_003178163.1| - 0.00014 20.8 0.0 0.087 11.6 0.0 2.3 2 0 0 2 2 2 2 NB-ARC domain Arch_ATPase PF01637.13 gi|257388390|ref|YP_003178163.1| - 0.0002 21.1 0.0 0.31 10.7 0.0 2.7 2 1 0 2 2 2 1 Archaeal ATPase AAA_11 PF13086.1 gi|257388390|ref|YP_003178163.1| - 0.00022 20.8 0.0 0.23 11.0 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_24 PF13479.1 gi|257388390|ref|YP_003178163.1| - 0.00025 20.7 0.0 0.1 12.1 0.0 2.5 2 0 0 2 2 2 1 AAA domain UPF0079 PF02367.12 gi|257388390|ref|YP_003178163.1| - 0.00067 19.2 0.0 1 9.0 0.0 2.4 2 0 0 2 2 2 2 Uncharacterised P-loop hydrolase UPF0079 Cytidylate_kin2 PF13189.1 gi|257388390|ref|YP_003178163.1| - 0.00092 19.1 0.0 0.61 9.9 0.0 2.4 2 0 0 2 2 2 1 Cytidylate kinase-like family CDC48_2 PF02933.12 gi|257388390|ref|YP_003178163.1| - 0.0014 18.2 0.0 0.007 15.9 0.0 2.2 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), domain 2 AAA_30 PF13604.1 gi|257388390|ref|YP_003178163.1| - 0.0044 16.6 1.8 0.8 9.2 0.0 3.2 3 1 0 3 3 2 1 AAA domain CPT PF07931.7 gi|257388390|ref|YP_003178163.1| - 0.01 15.4 0.0 10 5.6 0.0 3.2 3 0 0 3 3 3 0 Chloramphenicol phosphotransferase-like protein DEAD PF00270.24 gi|257388390|ref|YP_003178163.1| - 0.011 15.2 0.8 59 3.1 0.0 4.0 3 1 1 4 4 4 0 DEAD/DEAH box helicase SKI PF01202.17 gi|257388390|ref|YP_003178163.1| - 0.017 14.9 0.0 4.3 7.1 0.0 2.5 2 0 0 2 2 2 0 Shikimate kinase Viral_helicase1 PF01443.13 gi|257388390|ref|YP_003178163.1| - 0.02 14.3 0.0 2.8 7.4 0.0 2.3 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase ResIII PF04851.10 gi|257388390|ref|YP_003178163.1| - 0.027 14.2 0.0 6.3 6.5 0.0 2.4 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit NTPase_1 PF03266.10 gi|257388390|ref|YP_003178163.1| - 0.054 13.2 1.3 17 5.0 0.0 3.8 2 2 0 4 4 4 0 NTPase Bac_DnaA PF00308.13 gi|257388390|ref|YP_003178163.1| - 0.055 13.1 0.0 12 5.4 0.0 2.6 2 1 0 2 2 2 0 Bacterial dnaA protein RL11D PF11088.3 gi|257388390|ref|YP_003178163.1| - 0.061 13.1 0.1 0.11 12.2 0.1 1.4 1 0 0 1 1 1 0 Glycoprotein encoding membrane proteins RL5A and RL6 Torsin PF06309.6 gi|257388390|ref|YP_003178163.1| - 0.066 13.1 0.0 2.3 8.1 0.0 2.4 2 0 0 2 2 2 0 Torsin AAA_23 PF13476.1 gi|257388390|ref|YP_003178163.1| - 0.11 12.8 0.0 12 6.1 0.0 2.6 2 0 0 2 2 2 0 AAA domain Zot PF05707.7 gi|257388390|ref|YP_003178163.1| - 0.32 10.4 1.6 36 3.7 0.1 3.6 2 2 0 2 2 2 0 Zonular occludens toxin (Zot) zf-C2H2_jaz PF12171.3 gi|257388391|ref|YP_003178164.1| - 0.00012 22.0 0.5 0.00017 21.5 0.3 1.3 1 0 0 1 1 1 1 Zinc-finger double-stranded RNA-binding zf-C2H2_4 PF13894.1 gi|257388391|ref|YP_003178164.1| - 0.0036 17.5 0.1 0.0049 17.1 0.1 1.2 1 0 0 1 1 1 1 C2H2-type zinc finger zf-C2H2 PF00096.21 gi|257388391|ref|YP_003178164.1| - 0.0042 17.3 0.4 0.0055 16.9 0.3 1.2 1 0 0 1 1 1 1 Zinc finger, C2H2 type zf-met PF12874.2 gi|257388391|ref|YP_003178164.1| - 0.0055 16.8 0.1 0.008 16.3 0.1 1.3 1 0 0 1 1 1 1 Zinc-finger of C2H2 type RNA_POL_M_15KD PF02150.11 gi|257388391|ref|YP_003178164.1| - 0.038 13.6 2.6 2.5 7.8 0.1 2.1 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit Rubredoxin PF00301.15 gi|257388391|ref|YP_003178164.1| - 0.14 12.0 0.9 0.18 11.7 0.6 1.2 1 0 0 1 1 1 0 Rubredoxin zf-C2H2_3 PF13878.1 gi|257388391|ref|YP_003178164.1| - 0.29 10.7 5.3 0.4 10.2 3.7 1.3 1 1 0 1 1 1 0 zinc-finger of acetyl-transferase ESCO OrfB_Zn_ribbon PF07282.6 gi|257388392|ref|YP_003178165.1| - 9.6e-24 82.8 1.4 2.8e-23 81.3 1.0 1.8 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|257388392|ref|YP_003178165.1| - 2.3e-12 46.7 0.0 3.4e-12 46.2 0.0 1.2 1 0 0 1 1 1 1 Probable transposase Activator-TraM PF11657.3 gi|257388392|ref|YP_003178165.1| - 0.034 13.6 0.0 0.059 12.8 0.0 1.3 1 0 0 1 1 1 0 Transcriptional activator TraM DUF2072 PF09845.4 gi|257388392|ref|YP_003178165.1| - 0.15 12.0 3.7 3.8 7.4 0.0 2.8 3 0 0 3 3 3 0 Zn-ribbon containing protein (DUF2072) DCAF15_WD40 PF14939.1 gi|257388392|ref|YP_003178165.1| - 0.19 11.0 0.7 0.29 10.4 0.5 1.2 1 0 0 1 1 1 0 DDB1-and CUL4-substrate receptor 15, WD repeat DUF2202 PF09968.4 gi|257388392|ref|YP_003178165.1| - 0.2 11.2 0.9 2.1 7.9 0.0 2.4 3 0 0 3 3 3 0 Uncharacterized protein domain (DUF2202) DZR PF12773.2 gi|257388392|ref|YP_003178165.1| - 0.22 11.3 4.8 0.19 11.5 1.7 2.1 2 0 0 2 2 2 0 Double zinc ribbon GHMP_kinases_N PF00288.21 gi|257388394|ref|YP_003178167.1| - 5.2e-11 42.4 0.9 5.2e-11 42.4 0.6 2.1 3 0 0 3 3 3 1 GHMP kinases N terminal domain CM_2 PF01817.16 gi|257388395|ref|YP_003178168.1| - 8.3e-18 64.2 3.3 9.3e-18 64.0 2.3 1.0 1 0 0 1 1 1 1 Chorismate mutase type II DUF4404 PF14357.1 gi|257388395|ref|YP_003178168.1| - 0.012 16.0 0.9 0.016 15.6 0.7 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4404) Cytidylate_kin2 PF13189.1 gi|257388395|ref|YP_003178168.1| - 0.057 13.3 0.3 0.067 13.0 0.2 1.1 1 0 0 1 1 1 0 Cytidylate kinase-like family DUF1616 PF07760.6 gi|257388396|ref|YP_003178169.1| - 0.032 13.3 0.8 0.038 13.1 0.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1616) HTH_20 PF12840.2 gi|257388397|ref|YP_003178170.1| - 1.9e-12 46.8 0.0 2.8e-12 46.2 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|257388397|ref|YP_003178170.1| - 4.3e-10 39.0 0.0 5.8e-10 38.6 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|257388397|ref|YP_003178170.1| - 2.7e-08 33.3 0.0 3.8e-08 32.9 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|257388397|ref|YP_003178170.1| - 2.8e-08 33.0 0.0 4.4e-08 32.3 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|257388397|ref|YP_003178170.1| - 1.6e-07 30.8 0.0 2.6e-07 30.1 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|257388397|ref|YP_003178170.1| - 1.9e-07 30.5 0.0 2.9e-07 29.9 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_11 PF08279.7 gi|257388397|ref|YP_003178170.1| - 3.4e-05 23.4 0.0 7.3e-05 22.3 0.0 1.6 1 0 0 1 1 1 1 HTH domain HTH_AsnC-type PF13404.1 gi|257388397|ref|YP_003178170.1| - 3.8e-05 23.1 0.0 7.2e-05 22.2 0.0 1.5 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain MarR PF01047.17 gi|257388397|ref|YP_003178170.1| - 0.00027 20.5 0.0 0.00053 19.6 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_23 PF13384.1 gi|257388397|ref|YP_003178170.1| - 0.0004 19.9 0.0 0.00065 19.2 0.0 1.2 1 0 0 1 1 1 1 Homeodomain-like domain Rrf2 PF02082.15 gi|257388397|ref|YP_003178170.1| - 0.00048 20.1 0.0 0.00071 19.6 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator HTH_27 PF13463.1 gi|257388397|ref|YP_003178170.1| - 0.0007 19.8 0.0 0.0012 19.1 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.14 gi|257388397|ref|YP_003178170.1| - 0.0022 17.9 0.0 0.0033 17.3 0.0 1.2 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_7 PF02796.10 gi|257388397|ref|YP_003178170.1| - 0.0028 17.4 0.0 0.0078 16.0 0.0 1.7 1 1 1 2 2 2 1 Helix-turn-helix domain of resolvase Sigma70_r4_2 PF08281.7 gi|257388397|ref|YP_003178170.1| - 0.0045 16.4 0.0 0.0066 15.8 0.0 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_30 PF13556.1 gi|257388397|ref|YP_003178170.1| - 0.0047 16.5 0.0 0.012 15.2 0.0 1.6 2 0 0 2 2 2 1 PucR C-terminal helix-turn-helix domain HTH_38 PF13936.1 gi|257388397|ref|YP_003178170.1| - 0.0094 15.4 0.0 0.015 14.8 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain PadR PF03551.9 gi|257388397|ref|YP_003178170.1| - 0.01 15.5 0.0 0.016 14.9 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_28 PF13518.1 gi|257388397|ref|YP_003178170.1| - 0.011 15.7 0.0 0.016 15.2 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain GntR PF00392.16 gi|257388397|ref|YP_003178170.1| - 0.015 14.7 0.0 0.024 14.0 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HxlR PF01638.12 gi|257388397|ref|YP_003178170.1| - 0.021 14.4 0.0 0.025 14.2 0.0 1.1 1 0 0 1 1 1 0 HxlR-like helix-turn-helix HTH_29 PF13551.1 gi|257388397|ref|YP_003178170.1| - 0.027 14.5 0.0 0.039 14.1 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix FUR PF01475.14 gi|257388397|ref|YP_003178170.1| - 0.028 14.3 0.0 0.039 13.8 0.0 1.2 1 0 0 1 1 1 0 Ferric uptake regulator family Replic_Relax PF13814.1 gi|257388397|ref|YP_003178170.1| - 0.029 14.2 0.0 0.034 13.9 0.0 1.2 1 0 0 1 1 1 0 Replication-relaxation TFIIE_alpha PF02002.12 gi|257388397|ref|YP_003178170.1| - 0.029 13.8 0.0 0.038 13.4 0.0 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_10 PF04967.7 gi|257388397|ref|YP_003178170.1| - 0.029 13.9 0.0 0.047 13.2 0.0 1.3 1 0 0 1 1 1 0 HTH DNA binding domain HTH_34 PF13601.1 gi|257388397|ref|YP_003178170.1| - 0.05 13.6 0.0 0.074 13.0 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_Crp_2 PF13545.1 gi|257388397|ref|YP_003178170.1| - 0.057 13.2 0.0 0.1 12.3 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_22 PF13309.1 gi|257388397|ref|YP_003178170.1| - 0.063 13.0 0.0 0.13 12.0 0.0 1.5 1 0 0 1 1 1 0 HTH domain HTH_Tnp_ISL3 PF13542.1 gi|257388397|ref|YP_003178170.1| - 0.091 11.9 0.0 0.19 10.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 Sigma70_r4 PF04545.11 gi|257388397|ref|YP_003178170.1| - 0.098 11.9 0.0 0.15 11.4 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 EF1_GNE PF00736.14 gi|257388397|ref|YP_003178170.1| - 0.13 12.0 0.0 0.25 11.0 0.0 1.5 1 0 0 1 1 1 0 EF-1 guanine nucleotide exchange domain Cas_Cas02710 PF09670.5 gi|257388398|ref|YP_003178171.1| - 0.0079 14.8 0.0 0.011 14.3 0.0 1.1 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas02710) HTH_27 PF13463.1 gi|257388398|ref|YP_003178171.1| - 0.055 13.8 0.0 0.41 11.0 0.0 2.2 2 0 0 2 2 2 0 Winged helix DNA-binding domain Acetyltransf_4 PF13420.1 gi|257388399|ref|YP_003178172.1| - 2e-29 102.5 0.0 2.3e-29 102.3 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|257388399|ref|YP_003178172.1| - 7.3e-12 45.1 0.2 1.4e-11 44.2 0.1 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|257388399|ref|YP_003178172.1| - 1.8e-08 34.5 0.1 2.5e-08 34.0 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|257388399|ref|YP_003178172.1| - 4.2e-06 26.8 0.0 6e-06 26.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|257388399|ref|YP_003178172.1| - 2.2e-05 24.3 0.2 3.9e-05 23.4 0.1 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|257388399|ref|YP_003178172.1| - 0.013 15.2 0.0 0.021 14.5 0.0 1.4 1 0 0 1 1 1 0 FR47-like protein Acetyltransf_8 PF13523.1 gi|257388399|ref|YP_003178172.1| - 0.085 12.7 0.1 0.1 12.4 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain EamA PF00892.15 gi|257388400|ref|YP_003178173.1| - 2.6e-34 117.9 24.8 1e-19 70.8 2.8 2.2 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|257388400|ref|YP_003178173.1| - 9e-05 22.6 31.0 0.00084 19.5 6.8 3.8 1 1 2 3 3 3 2 Multidrug resistance efflux transporter TPT PF03151.11 gi|257388400|ref|YP_003178173.1| - 0.064 12.8 19.1 0.056 13.0 5.7 2.5 2 1 0 2 2 2 0 Triose-phosphate Transporter family MitoNEET_N PF10660.4 gi|257388400|ref|YP_003178173.1| - 0.49 10.2 8.0 0.23 11.3 0.3 3.3 3 0 0 3 3 3 0 Iron-containing outer mitochondrial membrane protein N-terminus UPF0546 PF10639.4 gi|257388400|ref|YP_003178173.1| - 1.2 8.9 10.3 0.083 12.7 1.2 2.7 3 0 0 3 3 3 0 Uncharacterised protein family UPF0546 SurE PF01975.12 gi|257388401|ref|YP_003178174.1| - 4.3e-45 153.4 0.4 5.6e-45 153.0 0.3 1.1 1 0 0 1 1 1 1 Survival protein SurE Methyltransf_23 PF13489.1 gi|257388402|ref|YP_003178175.1| - 3.8e-10 39.7 0.0 6.7e-10 38.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|257388402|ref|YP_003178175.1| - 5e-08 33.3 0.0 1.1e-07 32.1 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|257388402|ref|YP_003178175.1| - 8.9e-07 29.4 0.1 3e-06 27.8 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|257388402|ref|YP_003178175.1| - 1.1e-06 28.3 0.0 2.4e-06 27.1 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|257388402|ref|YP_003178175.1| - 2.3e-05 24.7 0.0 7.7e-05 23.1 0.0 2.0 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|257388402|ref|YP_003178175.1| - 0.00029 20.2 0.0 0.00049 19.5 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Rsm22 PF09243.5 gi|257388402|ref|YP_003178175.1| - 0.00043 19.4 0.0 0.0006 18.9 0.0 1.2 1 0 0 1 1 1 1 Mitochondrial small ribosomal subunit Rsm22 Methyltransf_26 PF13659.1 gi|257388402|ref|YP_003178175.1| - 0.036 14.1 0.2 0.096 12.7 0.2 1.7 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_25 PF13649.1 gi|257388402|ref|YP_003178175.1| - 0.036 14.4 0.0 0.073 13.4 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain NodS PF05401.6 gi|257388402|ref|YP_003178175.1| - 0.04 13.3 0.0 0.065 12.6 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) MTS PF05175.9 gi|257388402|ref|YP_003178175.1| - 0.12 11.7 0.0 0.2 10.9 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain PDH PF02153.12 gi|257388403|ref|YP_003178176.1| - 7.9e-13 47.8 0.8 2.3e-12 46.3 0.5 1.6 1 1 0 1 1 1 1 Prephenate dehydrogenase F420_oxidored PF03807.12 gi|257388403|ref|YP_003178176.1| - 5.4e-07 29.9 0.2 7.3e-05 23.1 0.0 2.4 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.13 gi|257388403|ref|YP_003178176.1| - 2.9e-05 23.8 0.5 0.00023 20.8 0.0 2.1 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|257388403|ref|YP_003178176.1| - 0.0027 17.5 0.1 0.01 15.6 0.0 2.0 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.11 gi|257388403|ref|YP_003178176.1| - 0.0031 16.9 0.0 0.016 14.6 0.0 2.0 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Pyr_redox_3 PF13738.1 gi|257388403|ref|YP_003178176.1| - 0.0054 16.8 0.4 0.018 15.1 0.3 2.0 1 1 1 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GFO_IDH_MocA PF01408.17 gi|257388403|ref|YP_003178176.1| - 0.025 15.1 2.6 0.028 14.9 0.2 2.3 2 2 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_7 PF13241.1 gi|257388403|ref|YP_003178176.1| - 0.027 14.7 1.0 0.052 13.8 0.1 1.8 2 1 0 2 2 2 0 Putative NAD(P)-binding Saccharop_dh PF03435.13 gi|257388403|ref|YP_003178176.1| - 0.046 12.7 0.0 0.069 12.1 0.0 1.3 1 0 0 1 1 1 0 Saccharopine dehydrogenase Rossmann-like PF10727.4 gi|257388403|ref|YP_003178176.1| - 0.05 13.3 0.4 0.05 13.3 0.3 2.2 2 1 1 3 3 3 0 Rossmann-like domain ThiF PF00899.16 gi|257388403|ref|YP_003178176.1| - 0.058 13.2 2.4 0.067 13.0 0.2 2.2 2 2 1 3 3 3 0 ThiF family DAO PF01266.19 gi|257388403|ref|YP_003178176.1| - 0.092 11.6 1.0 0.14 11.0 0.6 1.5 1 1 0 1 1 1 0 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|257388403|ref|YP_003178176.1| - 0.11 12.4 0.1 0.2 11.5 0.0 1.5 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase KfrA_N PF11740.3 gi|257388403|ref|YP_003178176.1| - 0.44 10.9 13.4 0.086 13.2 4.2 2.6 2 1 0 2 2 2 0 Plasmid replication region DNA-binding N-term DUF883 PF05957.8 gi|257388403|ref|YP_003178176.1| - 2.5 8.5 6.7 4 7.8 0.1 3.3 3 1 1 4 4 3 0 Bacterial protein of unknown function (DUF883) IMPDH PF00478.20 gi|257388404|ref|YP_003178177.1| - 6.8e-129 429.7 5.7 7.7e-129 429.5 3.9 1.0 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain CBS PF00571.23 gi|257388404|ref|YP_003178177.1| - 1.9e-28 97.9 5.2 3e-14 52.4 0.2 2.6 2 0 0 2 2 2 2 CBS domain NMO PF03060.10 gi|257388404|ref|YP_003178177.1| - 7.5e-12 45.0 3.6 6.8e-07 28.7 1.3 2.5 2 0 0 2 2 2 2 Nitronate monooxygenase FMN_dh PF01070.13 gi|257388404|ref|YP_003178177.1| - 5e-09 35.4 5.8 1e-08 34.4 4.0 1.5 1 0 0 1 1 1 1 FMN-dependent dehydrogenase ThiG PF05690.9 gi|257388404|ref|YP_003178177.1| - 3.3e-05 23.0 1.2 3.3e-05 23.0 0.9 1.8 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG Glu_synthase PF01645.12 gi|257388404|ref|YP_003178177.1| - 4.7e-05 22.4 3.9 8.1e-05 21.6 2.7 1.3 1 0 0 1 1 1 1 Conserved region in glutamate synthase DHO_dh PF01180.16 gi|257388404|ref|YP_003178177.1| - 9.3e-05 21.5 1.2 0.00017 20.6 0.8 1.4 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase His_biosynth PF00977.16 gi|257388404|ref|YP_003178177.1| - 0.00058 19.1 3.0 0.00098 18.4 1.3 1.9 2 1 0 2 2 2 1 Histidine biosynthesis protein Dus PF01207.12 gi|257388404|ref|YP_003178177.1| - 0.00072 18.4 0.2 0.002 17.0 0.1 1.7 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) PcrB PF01884.12 gi|257388404|ref|YP_003178177.1| - 0.029 13.6 0.3 0.029 13.6 0.2 2.5 3 1 1 4 4 4 0 PcrB family Zn-ribbon_8 PF09723.5 gi|257388406|ref|YP_003178179.1| - 0.055 13.4 2.2 1.1 9.2 0.1 2.2 2 0 0 2 2 2 0 Zinc ribbon domain zf-IS66 PF13005.2 gi|257388406|ref|YP_003178179.1| - 0.46 10.5 2.2 0.46 10.5 0.1 1.9 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 A2L_zn_ribbon PF08792.5 gi|257388406|ref|YP_003178179.1| - 0.89 9.0 5.1 0.76 9.3 0.1 2.4 3 0 0 3 3 3 0 A2L zinc ribbon domain zf-C2H2 PF00096.21 gi|257388406|ref|YP_003178179.1| - 3.3 8.2 4.4 13 6.4 0.1 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type DUF217 PF02697.9 gi|257388407|ref|YP_003178180.1| - 0.0011 19.2 0.1 0.0012 19.0 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized ACR, COG1753 BBS1 PF14779.1 gi|257388407|ref|YP_003178180.1| - 0.039 12.9 0.7 0.044 12.7 0.5 1.0 1 0 0 1 1 1 0 Ciliary BBSome complex subunit 1 DUF3829 PF12889.2 gi|257388407|ref|YP_003178180.1| - 0.044 12.9 0.3 0.052 12.7 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3829) DUF2203 PF09969.4 gi|257388407|ref|YP_003178180.1| - 0.32 11.2 1.8 0.33 11.1 1.2 1.0 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2203) Plasmid_stabil PF05016.9 gi|257388408|ref|YP_003178181.1| - 1.2e-07 32.0 1.0 1.5e-07 31.6 0.7 1.1 1 0 0 1 1 1 1 Plasmid stabilisation system protein Metallophos_2 PF12850.2 gi|257388409|ref|YP_003178182.1| - 1.3e-14 54.3 0.1 9.5e-14 51.5 0.1 2.0 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|257388409|ref|YP_003178182.1| - 6.8e-05 22.3 1.1 0.00082 18.8 0.8 2.5 2 1 0 2 2 2 1 Calcineurin-like phosphoesterase RadC PF04002.10 gi|257388409|ref|YP_003178182.1| - 0.056 13.1 0.0 0.1 12.2 0.0 1.3 1 0 0 1 1 1 0 RadC-like JAB domain PBC PF03792.8 gi|257388409|ref|YP_003178182.1| - 0.16 11.6 0.0 0.27 10.9 0.0 1.2 1 0 0 1 1 1 0 PBC domain AhpC-TSA PF00578.16 gi|257388411|ref|YP_003178184.1| - 2.3e-30 104.7 0.0 2.6e-30 104.6 0.0 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|257388411|ref|YP_003178184.1| - 1.1e-23 83.3 0.0 1.4e-23 83.0 0.0 1.0 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.1 gi|257388411|ref|YP_003178184.1| - 0.00023 21.0 0.0 0.017 15.0 0.0 2.1 1 1 1 2 2 2 2 AhpC/TSA antioxidant enzyme DUF899 PF05988.7 gi|257388411|ref|YP_003178184.1| - 0.00066 19.1 0.0 0.00082 18.8 0.0 1.0 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF899) Pup PF05639.6 gi|257388412|ref|YP_003178185.1| - 0.00063 20.1 1.0 0.00063 20.1 0.7 2.9 3 0 0 3 3 3 1 Pup-like protein Syntaxin PF00804.20 gi|257388412|ref|YP_003178185.1| - 0.0079 16.3 0.2 0.016 15.3 0.1 1.6 1 1 1 2 2 2 1 Syntaxin Prefoldin PF02996.12 gi|257388412|ref|YP_003178185.1| - 0.072 12.7 2.1 0.88 9.2 0.1 2.7 2 1 1 3 3 3 0 Prefoldin subunit DUF3552 PF12072.3 gi|257388412|ref|YP_003178185.1| - 0.13 11.4 4.1 0.15 11.2 2.9 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3552) IMS PF00817.15 gi|257388414|ref|YP_003178187.1| - 9.4e-40 135.8 0.0 1.4e-39 135.2 0.0 1.3 1 0 0 1 1 1 1 impB/mucB/samB family IMS_C PF11799.3 gi|257388414|ref|YP_003178187.1| - 2.8e-17 62.8 0.0 6.1e-17 61.7 0.0 1.6 2 0 0 2 2 2 1 impB/mucB/samB family C-terminal domain IMS_HHH PF11798.3 gi|257388414|ref|YP_003178187.1| - 2.7e-08 33.3 0.0 5.1e-08 32.5 0.0 1.5 1 0 0 1 1 1 1 IMS family HHH motif HHH_5 PF14520.1 gi|257388414|ref|YP_003178187.1| - 8.8e-06 25.8 0.0 2.2e-05 24.5 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.4 gi|257388414|ref|YP_003178187.1| - 0.0019 17.7 0.0 0.0041 16.6 0.0 1.5 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda Cdd1 PF11731.3 gi|257388414|ref|YP_003178187.1| - 0.0057 16.5 0.0 0.011 15.6 0.0 1.4 1 0 0 1 1 1 1 Pathogenicity locus AAA_10 PF12846.2 gi|257388415|ref|YP_003178188.1| - 2.6e-17 63.2 2.4 1.1e-08 34.8 0.0 3.1 1 1 1 3 3 3 2 AAA-like domain DUF87 PF01935.12 gi|257388415|ref|YP_003178188.1| - 6.6e-13 48.9 2.5 5.4e-12 46.0 1.7 2.2 1 1 0 1 1 1 1 Domain of unknown function DUF87 DUF853 PF05872.7 gi|257388415|ref|YP_003178188.1| - 3.8e-05 22.2 0.0 0.0011 17.3 0.0 2.3 2 0 0 2 2 2 1 Bacterial protein of unknown function (DUF853) AAA_17 PF13207.1 gi|257388415|ref|YP_003178188.1| - 0.00016 22.5 0.7 0.00075 20.3 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA PF00004.24 gi|257388415|ref|YP_003178188.1| - 0.00098 19.3 0.9 0.093 12.9 0.0 3.2 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Zot PF05707.7 gi|257388415|ref|YP_003178188.1| - 0.0011 18.4 0.2 0.019 14.4 0.2 2.3 1 1 0 1 1 1 1 Zonular occludens toxin (Zot) IncA PF04156.9 gi|257388415|ref|YP_003178188.1| - 0.0026 17.4 7.6 0.0026 17.4 5.2 1.8 2 0 0 2 2 2 1 IncA protein CbiA PF01656.18 gi|257388415|ref|YP_003178188.1| - 0.005 16.2 0.1 0.014 14.8 0.0 1.8 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain TPR_MLP1_2 PF07926.7 gi|257388415|ref|YP_003178188.1| - 0.0085 15.8 1.3 0.02 14.6 0.9 1.6 1 0 0 1 1 1 1 TPR/MLP1/MLP2-like protein AAA_18 PF13238.1 gi|257388415|ref|YP_003178188.1| - 0.0095 16.2 1.2 0.022 15.0 0.0 2.2 2 0 0 2 2 2 1 AAA domain APS_kinase PF01583.15 gi|257388415|ref|YP_003178188.1| - 0.011 15.4 0.2 0.043 13.4 0.0 2.1 3 0 0 3 3 2 0 Adenylylsulphate kinase AAA_13 PF13166.1 gi|257388415|ref|YP_003178188.1| - 0.014 13.8 1.3 0.024 13.1 0.9 1.2 1 0 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|257388415|ref|YP_003178188.1| - 0.02 14.3 2.5 0.15 11.5 0.0 3.1 3 1 0 3 3 3 0 FtsK/SpoIIIE family PEARLI-4 PF05278.7 gi|257388415|ref|YP_003178188.1| - 0.038 13.3 3.2 0.067 12.5 2.3 1.3 1 0 0 1 1 1 0 Arabidopsis phospholipase-like protein (PEARLI 4) Spc7 PF08317.6 gi|257388415|ref|YP_003178188.1| - 0.038 12.6 1.1 0.064 11.9 0.7 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein Med9 PF07544.8 gi|257388415|ref|YP_003178188.1| - 0.046 13.4 3.1 0.11 12.2 2.1 1.6 1 0 0 1 1 1 0 RNA polymerase II transcription mediator complex subunit 9 Atg14 PF10186.4 gi|257388415|ref|YP_003178188.1| - 0.061 12.2 2.0 0.094 11.6 1.4 1.2 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 CENP-H PF05837.7 gi|257388415|ref|YP_003178188.1| - 0.092 12.9 3.1 0.057 13.5 0.6 1.8 2 0 0 2 2 1 0 Centromere protein H (CENP-H) DUF2228 PF10228.4 gi|257388415|ref|YP_003178188.1| - 0.12 11.9 0.0 0.2 11.2 0.0 1.2 1 0 0 1 1 1 0 Uncharacterised conserved protein (DUF2228) Laminin_II PF06009.7 gi|257388415|ref|YP_003178188.1| - 0.12 12.1 0.7 0.32 10.7 0.5 1.6 1 0 0 1 1 1 0 Laminin Domain II TMF_TATA_bd PF12325.3 gi|257388415|ref|YP_003178188.1| - 0.13 11.9 8.8 1 9.1 3.5 2.6 2 0 0 2 2 2 0 TATA element modulatory factor 1 TATA binding ABC_tran PF00005.22 gi|257388415|ref|YP_003178188.1| - 0.15 12.3 0.9 5.5 7.2 0.0 2.4 2 0 0 2 2 2 0 ABC transporter DUF4407 PF14362.1 gi|257388415|ref|YP_003178188.1| - 0.19 10.6 3.9 0.37 9.7 2.7 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) DUF3450 PF11932.3 gi|257388415|ref|YP_003178188.1| - 0.19 10.9 3.9 0.36 10.0 2.7 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) AAA_23 PF13476.1 gi|257388415|ref|YP_003178188.1| - 0.25 11.6 9.5 1.4 9.1 6.6 2.1 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|257388415|ref|YP_003178188.1| - 0.44 10.5 7.5 0.69 9.8 0.3 3.7 3 1 0 3 3 3 0 AAA ATPase domain Mnd1 PF03962.10 gi|257388415|ref|YP_003178188.1| - 3.5 7.2 7.3 0.82 9.3 2.8 1.5 2 0 0 2 2 1 0 Mnd1 family Striatin PF08232.7 gi|257388415|ref|YP_003178188.1| - 3.8 7.8 8.9 1.1 9.5 3.7 1.9 2 0 0 2 2 2 0 Striatin family Pox_A_type_inc PF04508.7 gi|257388415|ref|YP_003178188.1| - 7.5 6.6 10.7 0.45 10.4 2.5 2.7 2 0 0 2 2 2 0 Viral A-type inclusion protein repeat TIM PF00121.13 gi|257388416|ref|YP_003178189.1| - 8.1e-25 87.2 0.3 8.1e-23 80.7 0.2 2.0 1 1 0 1 1 1 1 Triosephosphate isomerase ThiG PF05690.9 gi|257388416|ref|YP_003178189.1| - 4.9e-05 22.5 4.3 5.1e-05 22.4 1.3 2.1 1 1 1 2 2 2 1 Thiazole biosynthesis protein ThiG IGPS PF00218.16 gi|257388416|ref|YP_003178189.1| - 0.00095 18.2 0.2 0.003 16.6 0.0 1.9 2 1 0 2 2 2 1 Indole-3-glycerol phosphate synthase FMN_dh PF01070.13 gi|257388416|ref|YP_003178189.1| - 0.0028 16.5 2.3 0.0028 16.5 1.6 2.4 2 1 1 3 3 3 1 FMN-dependent dehydrogenase GDPD_2 PF13653.1 gi|257388416|ref|YP_003178189.1| - 0.13 12.5 0.0 0.52 10.5 0.0 2.1 2 0 0 2 2 2 0 Glycerophosphoryl diester phosphodiesterase family Glu_synthase PF01645.12 gi|257388416|ref|YP_003178189.1| - 0.14 11.0 2.1 1.3 7.8 0.2 2.1 1 1 1 2 2 2 0 Conserved region in glutamate synthase Response_reg PF00072.19 gi|257388417|ref|YP_003178190.1| - 2.8e-18 65.9 0.9 4.5e-18 65.3 0.6 1.3 1 0 0 1 1 1 1 Response regulator receiver domain HalX PF08663.5 gi|257388417|ref|YP_003178190.1| - 8.3e-16 57.7 3.2 8.3e-16 57.7 2.2 1.8 2 1 0 2 2 2 1 HalX domain IF-2B PF01008.12 gi|257388417|ref|YP_003178190.1| - 0.0044 16.0 0.3 0.0081 15.1 0.0 1.5 2 0 0 2 2 2 1 Initiation factor 2 subunit family DUF4140 PF13600.1 gi|257388417|ref|YP_003178190.1| - 0.1 13.0 1.9 0.2 12.1 1.3 1.6 1 1 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) NPV_P10 PF05531.7 gi|257388417|ref|YP_003178190.1| - 0.16 12.2 1.4 1.9 8.8 0.7 2.5 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein DegQ PF08181.6 gi|257388417|ref|YP_003178190.1| - 0.2 11.3 1.4 15 5.4 0.1 2.3 2 0 0 2 2 2 0 DegQ (SacQ) family HTH_31 PF13560.1 gi|257388418|ref|YP_003178191.1| - 3.4e-11 43.1 0.7 5.2e-11 42.5 0.5 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.2 gi|257388418|ref|YP_003178191.1| - 7.4e-11 41.9 0.1 1.2e-10 41.2 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|257388418|ref|YP_003178191.1| - 4.3e-10 39.2 0.2 6.2e-10 38.7 0.2 1.2 1 0 0 1 1 1 1 Helix-turn-helix HTH_25 PF13413.1 gi|257388418|ref|YP_003178191.1| - 8.7e-08 31.6 0.6 1.4e-07 31.0 0.4 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|257388418|ref|YP_003178191.1| - 0.012 14.8 0.2 0.019 14.2 0.2 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_37 PF13744.1 gi|257388418|ref|YP_003178191.1| - 0.021 14.6 0.1 0.033 13.9 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain DUF2638 PF10937.3 gi|257388418|ref|YP_003178191.1| - 0.055 14.4 0.4 0.09 13.7 0.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2638) COPR5 PF15340.1 gi|257388418|ref|YP_003178191.1| - 0.06 13.7 1.1 0.083 13.2 0.7 1.2 1 0 0 1 1 1 0 Cooperator of PRMT5 family ZZ PF00569.12 gi|257388418|ref|YP_003178191.1| - 0.087 12.3 0.2 0.16 11.5 0.1 1.4 1 0 0 1 1 1 0 Zinc finger, ZZ type RPA_C PF08784.6 gi|257388418|ref|YP_003178191.1| - 0.096 13.1 0.1 0.15 12.5 0.1 1.3 1 0 0 1 1 1 0 Replication protein A C terminal HTH_26 PF13443.1 gi|257388418|ref|YP_003178191.1| - 0.11 12.6 0.0 0.19 11.9 0.0 1.5 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain SR-25 PF10500.4 gi|257388418|ref|YP_003178191.1| - 0.43 10.0 15.5 0.51 9.7 10.6 1.3 1 1 0 1 1 1 0 Nuclear RNA-splicing-associated protein Macoilin PF09726.4 gi|257388418|ref|YP_003178191.1| - 0.54 8.4 3.7 0.53 8.5 2.6 1.1 1 0 0 1 1 1 0 Transmembrane protein RAP1 PF07218.6 gi|257388418|ref|YP_003178191.1| - 1 7.3 4.4 1.1 7.2 3.0 1.2 1 0 0 1 1 1 0 Rhoptry-associated protein 1 (RAP-1) DUF515 PF04415.7 gi|257388418|ref|YP_003178191.1| - 1.5 7.0 4.2 1.8 6.7 2.9 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF515) Period_C PF12114.3 gi|257388418|ref|YP_003178191.1| - 2.8 7.5 14.2 0.25 10.9 6.6 1.6 2 0 0 2 2 2 0 Period protein 2/3C-terminal region CDP-OH_P_transf PF01066.16 gi|257388419|ref|YP_003178192.1| - 7.8e-12 45.3 9.1 2.1e-11 44.0 6.3 1.7 1 1 0 1 1 1 1 CDP-alcohol phosphatidyltransferase AAA_18 PF13238.1 gi|257388420|ref|YP_003178193.1| - 2.3e-24 86.1 0.2 3.2e-24 85.6 0.1 1.2 1 0 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|257388420|ref|YP_003178193.1| - 2.6e-18 66.9 1.2 4e-18 66.3 0.8 1.5 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|257388420|ref|YP_003178193.1| - 9.4e-09 35.2 0.5 0.00044 20.1 0.0 2.2 1 1 1 2 2 2 2 AAA domain AAA_28 PF13521.1 gi|257388420|ref|YP_003178193.1| - 3.7e-06 27.0 2.5 1.8e-05 24.7 0.1 2.2 1 1 1 2 2 2 1 AAA domain SKI PF01202.17 gi|257388420|ref|YP_003178193.1| - 8.7e-05 22.4 0.3 0.014 15.2 0.1 2.2 2 0 0 2 2 2 1 Shikimate kinase AAA_22 PF13401.1 gi|257388420|ref|YP_003178193.1| - 0.00045 20.3 0.1 0.00069 19.7 0.0 1.5 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|257388420|ref|YP_003178193.1| - 0.00046 19.8 0.0 0.0012 18.5 0.0 1.7 1 0 0 1 1 1 1 Part of AAA domain AAA PF00004.24 gi|257388420|ref|YP_003178193.1| - 0.00064 19.9 0.5 0.0021 18.2 0.3 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NTPase_1 PF03266.10 gi|257388420|ref|YP_003178193.1| - 0.002 17.8 0.3 0.0074 16.0 0.1 1.9 2 0 0 2 2 2 1 NTPase ADK PF00406.17 gi|257388420|ref|YP_003178193.1| - 0.0028 17.5 0.2 0.14 11.9 0.0 2.2 2 0 0 2 2 2 1 Adenylate kinase ArgK PF03308.11 gi|257388420|ref|YP_003178193.1| - 0.0042 15.8 0.3 0.008 14.9 0.0 1.6 2 0 0 2 2 2 1 ArgK protein Trns_repr_metal PF02583.12 gi|257388420|ref|YP_003178193.1| - 0.0045 17.1 0.3 0.35 11.0 0.0 2.3 1 1 1 2 2 2 1 Metal-sensitive transcriptional repressor CoaE PF01121.15 gi|257388420|ref|YP_003178193.1| - 0.0046 16.3 0.2 0.77 9.1 0.0 2.2 2 0 0 2 2 2 1 Dephospho-CoA kinase MobB PF03205.9 gi|257388420|ref|YP_003178193.1| - 0.0071 16.0 3.0 0.03 14.0 0.1 2.2 1 1 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B KTI12 PF08433.5 gi|257388420|ref|YP_003178193.1| - 0.016 14.4 0.0 0.026 13.7 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_16 PF13191.1 gi|257388420|ref|YP_003178193.1| - 0.024 14.6 1.1 0.064 13.2 0.8 1.9 1 1 0 1 1 1 0 AAA ATPase domain Thymidylate_kin PF02223.12 gi|257388420|ref|YP_003178193.1| - 0.024 13.9 0.2 5.1 6.4 0.0 2.1 2 0 0 2 2 2 0 Thymidylate kinase AAA_5 PF07728.9 gi|257388420|ref|YP_003178193.1| - 0.053 13.2 0.1 0.34 10.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) Miro PF08477.8 gi|257388420|ref|YP_003178193.1| - 0.057 13.9 0.0 0.12 12.8 0.0 1.6 1 1 1 2 2 1 0 Miro-like protein RNA_helicase PF00910.17 gi|257388420|ref|YP_003178193.1| - 0.057 13.6 0.0 0.1 12.7 0.0 1.5 1 0 0 1 1 1 0 RNA helicase NACHT PF05729.7 gi|257388420|ref|YP_003178193.1| - 0.067 12.8 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 NACHT domain dNK PF01712.14 gi|257388420|ref|YP_003178193.1| - 0.088 12.7 0.0 0.11 12.3 0.0 1.3 1 0 0 1 1 1 0 Deoxynucleoside kinase DUF2075 PF09848.4 gi|257388420|ref|YP_003178193.1| - 0.091 11.7 0.1 0.16 10.9 0.1 1.3 1 1 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Viral_helicase1 PF01443.13 gi|257388420|ref|YP_003178193.1| - 0.092 12.2 0.1 0.17 11.3 0.0 1.5 1 1 0 1 1 1 0 Viral (Superfamily 1) RNA helicase Zeta_toxin PF06414.7 gi|257388420|ref|YP_003178193.1| - 0.14 11.2 0.9 0.49 9.4 0.6 2.0 1 1 0 1 1 1 0 Zeta toxin AAA_24 PF13479.1 gi|257388420|ref|YP_003178193.1| - 0.3 10.6 2.3 0.43 10.1 1.6 1.6 1 1 0 1 1 1 0 AAA domain Aminotran_1_2 PF00155.16 gi|257388421|ref|YP_003178194.1| - 8.8e-65 219.0 0.0 1e-64 218.8 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Alliinase_C PF04864.8 gi|257388421|ref|YP_003178194.1| - 0.00055 18.6 0.0 0.00081 18.1 0.0 1.2 1 0 0 1 1 1 1 Allinase DUF3798 PF12683.2 gi|257388421|ref|YP_003178194.1| - 0.071 12.1 0.0 0.11 11.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3798) Cys_Met_Meta_PP PF01053.15 gi|257388421|ref|YP_003178194.1| - 0.074 11.3 0.0 0.13 10.5 0.0 1.3 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme FTR PF01913.13 gi|257388421|ref|YP_003178194.1| - 0.09 12.5 0.0 0.17 11.5 0.0 1.4 1 0 0 1 1 1 0 Formylmethanofuran-tetrahydromethanopterin formyltransferase CheC PF04509.7 gi|257388422|ref|YP_003178195.1| - 6.7e-06 25.7 0.0 1.6e-05 24.5 0.0 1.7 1 0 0 1 1 1 1 CheC-like family CheX PF13690.1 gi|257388422|ref|YP_003178195.1| - 1.4e-05 24.8 0.0 2.3e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 Chemotaxis phosphatase CheX CopD PF05425.8 gi|257388423|ref|YP_003178196.1| - 5.6e-06 26.5 4.9 5.6e-06 26.5 3.4 2.0 2 0 0 2 2 2 1 Copper resistance protein D DUF373 PF04123.8 gi|257388423|ref|YP_003178196.1| - 0.044 12.7 1.3 0.055 12.4 0.9 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF373) GMC_oxred_C PF05199.8 gi|257388424|ref|YP_003178197.1| - 7.4e-24 84.6 0.9 2.7e-23 82.8 0.6 1.9 1 1 0 1 1 1 1 GMC oxidoreductase GMC_oxred_N PF00732.14 gi|257388424|ref|YP_003178197.1| - 4.9e-12 45.6 0.0 7.5e-12 44.9 0.0 1.3 1 0 0 1 1 1 1 GMC oxidoreductase DAO PF01266.19 gi|257388424|ref|YP_003178197.1| - 3.1e-10 39.5 0.2 2.9e-05 23.1 0.0 2.6 3 0 0 3 3 3 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|257388424|ref|YP_003178197.1| - 3.1e-09 36.1 0.4 0.00086 18.2 0.1 2.2 2 0 0 2 2 2 2 FAD binding domain NAD_binding_8 PF13450.1 gi|257388424|ref|YP_003178197.1| - 3.9e-07 30.0 0.0 1.2e-06 28.4 0.0 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain ApbA PF02558.11 gi|257388424|ref|YP_003178197.1| - 0.00013 21.4 0.0 0.0032 16.9 0.0 2.3 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA HI0933_like PF03486.9 gi|257388424|ref|YP_003178197.1| - 0.00013 20.5 0.3 0.0031 16.0 0.2 2.0 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_2 PF07992.9 gi|257388424|ref|YP_003178197.1| - 0.00055 19.8 0.0 0.0021 17.9 0.0 1.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_10 PF13460.1 gi|257388424|ref|YP_003178197.1| - 0.00063 19.7 0.2 0.62 10.0 0.0 2.6 3 0 0 3 3 2 2 NADH(P)-binding Amino_oxidase PF01593.19 gi|257388424|ref|YP_003178197.1| - 0.00078 18.6 0.3 0.047 12.7 0.1 2.4 2 0 0 2 2 2 1 Flavin containing amine oxidoreductase Lycopene_cycl PF05834.7 gi|257388424|ref|YP_003178197.1| - 0.0014 17.6 0.1 0.0023 16.9 0.1 1.3 1 0 0 1 1 1 1 Lycopene cyclase protein FAD_binding_3 PF01494.14 gi|257388424|ref|YP_003178197.1| - 0.0016 17.5 0.0 0.0016 17.5 0.0 1.6 2 0 0 2 2 2 1 FAD binding domain Fer4_7 PF12838.2 gi|257388424|ref|YP_003178197.1| - 0.0021 18.3 0.7 0.0046 17.3 0.5 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Pyr_redox PF00070.22 gi|257388424|ref|YP_003178197.1| - 0.013 15.8 0.0 0.03 14.7 0.0 1.6 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|257388424|ref|YP_003178197.1| - 0.014 15.4 0.3 0.043 13.8 0.2 1.7 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|257388424|ref|YP_003178197.1| - 0.037 13.6 0.0 0.058 13.0 0.0 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Fer4_8 PF13183.1 gi|257388424|ref|YP_003178197.1| - 0.046 13.7 0.1 0.089 12.8 0.1 1.4 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|257388424|ref|YP_003178197.1| - 0.063 13.0 0.1 0.13 12.1 0.1 1.4 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4 PF00037.22 gi|257388424|ref|YP_003178197.1| - 0.088 12.4 0.5 0.17 11.5 0.3 1.5 1 0 0 1 1 1 0 4Fe-4S binding domain Fer4_17 PF13534.1 gi|257388424|ref|YP_003178197.1| - 0.14 12.5 0.0 0.28 11.5 0.0 1.4 1 0 0 1 1 1 0 4Fe-4S dicluster domain TrkA_N PF02254.13 gi|257388424|ref|YP_003178197.1| - 0.15 12.0 0.0 0.51 10.3 0.0 1.9 2 0 0 2 2 2 0 TrkA-N domain Fer4_3 PF12798.2 gi|257388424|ref|YP_003178197.1| - 0.73 10.5 3.0 1.7 9.4 2.1 1.6 1 0 0 1 1 1 0 4Fe-4S binding domain HTH_20 PF12840.2 gi|257388425|ref|YP_003178198.1| - 1.3e-13 50.5 0.1 2e-13 49.9 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|257388425|ref|YP_003178198.1| - 2.7e-08 33.0 0.0 4.4e-08 32.3 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.17 gi|257388425|ref|YP_003178198.1| - 5.2e-08 32.4 0.0 8.4e-08 31.8 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.15 gi|257388425|ref|YP_003178198.1| - 5.7e-08 32.3 0.0 1.5e-07 30.9 0.0 1.6 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|257388425|ref|YP_003178198.1| - 2.3e-07 30.3 0.1 4.5e-07 29.4 0.1 1.5 1 1 0 1 1 1 1 MarR family TFIIE_alpha PF02002.12 gi|257388425|ref|YP_003178198.1| - 8e-07 28.5 0.0 1e-06 28.1 0.0 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_27 PF13463.1 gi|257388425|ref|YP_003178198.1| - 1e-06 28.9 0.3 2.5e-06 27.6 0.0 1.7 3 0 0 3 3 1 1 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|257388425|ref|YP_003178198.1| - 7.4e-06 25.4 0.1 1.4e-05 24.5 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|257388425|ref|YP_003178198.1| - 4e-05 23.2 0.0 6.6e-05 22.5 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB B-block_TFIIIC PF04182.7 gi|257388425|ref|YP_003178198.1| - 0.0011 18.8 0.0 0.0015 18.2 0.0 1.4 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_34 PF13601.1 gi|257388425|ref|YP_003178198.1| - 0.0016 18.4 0.0 0.0021 18.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_11 PF08279.7 gi|257388425|ref|YP_003178198.1| - 0.0019 17.8 0.0 0.003 17.1 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_30 PF13556.1 gi|257388425|ref|YP_003178198.1| - 0.0054 16.2 0.1 0.011 15.3 0.0 1.4 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain DUF2250 PF10007.4 gi|257388425|ref|YP_003178198.1| - 0.022 14.6 0.1 0.26 11.1 0.1 2.0 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_10 PF04967.7 gi|257388425|ref|YP_003178198.1| - 0.034 13.7 0.1 0.1 12.2 0.0 1.8 1 1 1 2 2 2 0 HTH DNA binding domain FeoC PF09012.5 gi|257388425|ref|YP_003178198.1| - 0.041 13.5 0.0 0.099 12.3 0.0 1.6 1 0 0 1 1 1 0 FeoC like transcriptional regulator HTH_AsnC-type PF13404.1 gi|257388425|ref|YP_003178198.1| - 0.071 12.6 0.0 0.14 11.6 0.0 1.4 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain EAP30 PF04157.11 gi|257388425|ref|YP_003178198.1| - 0.096 11.8 0.0 0.13 11.4 0.0 1.2 1 0 0 1 1 1 0 EAP30/Vps36 family TFIIA_gamma_N PF02268.11 gi|257388425|ref|YP_003178198.1| - 0.16 11.5 0.6 0.6 9.7 0.1 2.2 2 0 0 2 2 2 0 Transcription initiation factor IIA, gamma subunit, helical domain FAA_hydrolase PF01557.13 gi|257388427|ref|YP_003178200.1| - 1.1e-63 214.5 0.0 1.5e-63 214.1 0.0 1.1 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family DUF21 PF01595.15 gi|257388428|ref|YP_003178201.1| - 2.5e-31 108.3 0.6 3.3e-31 108.0 0.4 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF21 CBS PF00571.23 gi|257388428|ref|YP_003178201.1| - 2.9e-13 49.3 0.3 1.1e-10 41.1 0.0 2.4 2 0 0 2 2 2 2 CBS domain HATPase_c PF02518.21 gi|257388429|ref|YP_003178202.1| - 1e-21 76.7 0.1 1.9e-21 75.8 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.1 gi|257388429|ref|YP_003178202.1| - 0.00016 21.3 0.0 0.00028 20.5 0.0 1.3 1 0 0 1 1 1 1 GHKL domain HATPase_c_2 PF13581.1 gi|257388429|ref|YP_003178202.1| - 0.00032 20.4 0.1 0.00058 19.6 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.1 gi|257388429|ref|YP_003178202.1| - 0.00049 19.7 0.0 0.0011 18.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|257388429|ref|YP_003178202.1| - 0.00064 19.6 0.1 0.005 16.7 0.1 2.3 1 1 0 1 1 1 1 His Kinase A (phospho-acceptor) domain NPV_P10 PF05531.7 gi|257388429|ref|YP_003178202.1| - 0.018 15.2 0.4 0.18 12.0 0.0 2.2 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein SnoaL_4 PF13577.1 gi|257388429|ref|YP_003178202.1| - 0.04 13.8 0.2 0.1 12.5 0.1 1.7 1 0 0 1 1 1 0 SnoaL-like domain Acetyltransf_1 PF00583.19 gi|257388430|ref|YP_003178203.1| - 7.6e-14 51.5 0.2 1e-13 51.1 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|257388430|ref|YP_003178203.1| - 1.9e-10 40.7 0.0 2.4e-10 40.4 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|257388430|ref|YP_003178203.1| - 1.8e-09 37.7 0.0 1.9e-09 37.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|257388430|ref|YP_003178203.1| - 0.00088 19.1 0.1 0.0018 18.1 0.1 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|257388430|ref|YP_003178203.1| - 0.0041 16.8 0.0 0.0064 16.2 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein DUF3749 PF12568.3 gi|257388430|ref|YP_003178203.1| - 0.053 13.1 0.2 0.073 12.6 0.1 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.1 gi|257388430|ref|YP_003178203.1| - 0.1 12.5 0.1 0.15 12.0 0.1 1.3 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain TrkA_N PF02254.13 gi|257388431|ref|YP_003178204.1| - 4.3e-21 75.0 1.5 1.6e-20 73.1 1.1 2.1 1 0 0 1 1 1 1 TrkA-N domain DHH PF01368.15 gi|257388431|ref|YP_003178204.1| - 1.2e-13 50.9 0.5 2.9e-13 49.6 0.3 1.7 1 0 0 1 1 1 1 DHH family NAD_binding_10 PF13460.1 gi|257388431|ref|YP_003178204.1| - 4.9e-07 29.9 2.4 1.2e-06 28.6 1.5 1.8 1 1 0 1 1 1 1 NADH(P)-binding F420_oxidored PF03807.12 gi|257388431|ref|YP_003178204.1| - 8e-07 29.4 0.3 4.1e-06 27.1 0.1 2.4 1 1 2 3 3 3 1 NADP oxidoreductase coenzyme F420-dependent Saccharop_dh PF03435.13 gi|257388431|ref|YP_003178204.1| - 1.5e-06 27.4 0.4 2.8e-06 26.5 0.3 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase ApbA PF02558.11 gi|257388431|ref|YP_003178204.1| - 1.9e-06 27.4 0.0 9.4e-06 25.1 0.0 2.1 1 1 1 2 2 2 1 Ketopantoate reductase PanE/ApbA Shikimate_DH PF01488.15 gi|257388431|ref|YP_003178204.1| - 1.1e-05 25.6 0.1 3e-05 24.1 0.1 1.8 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|257388431|ref|YP_003178204.1| - 2.5e-05 24.0 0.0 6.6e-05 22.6 0.0 1.7 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_7 PF13241.1 gi|257388431|ref|YP_003178204.1| - 3e-05 24.2 1.7 6.6e-05 23.1 0.4 2.2 1 1 1 2 2 2 1 Putative NAD(P)-binding NAD_binding_2 PF03446.10 gi|257388431|ref|YP_003178204.1| - 0.00016 21.5 0.0 0.0004 20.2 0.0 1.7 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.7 gi|257388431|ref|YP_003178204.1| - 0.00018 20.9 1.8 0.00026 20.4 0.2 1.9 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain 3HCDH_N PF02737.13 gi|257388431|ref|YP_003178204.1| - 0.0013 18.4 0.5 0.0033 17.1 0.1 1.9 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DHHA1 PF02272.14 gi|257388431|ref|YP_003178204.1| - 0.0028 17.3 0.0 0.0092 15.6 0.0 1.9 1 0 0 1 1 1 1 DHHA1 domain UDPG_MGDP_dh_N PF03721.9 gi|257388431|ref|YP_003178204.1| - 0.0035 16.7 0.4 0.016 14.5 0.0 2.4 2 2 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain XdhC_C PF13478.1 gi|257388431|ref|YP_003178204.1| - 0.009 16.3 0.6 0.41 10.9 0.1 2.7 2 0 0 2 2 2 1 XdhC Rossmann domain 2-Hacid_dh_C PF02826.14 gi|257388431|ref|YP_003178204.1| - 0.016 14.3 0.1 0.036 13.2 0.0 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain adh_short PF00106.20 gi|257388431|ref|YP_003178204.1| - 0.024 14.5 8.9 0.13 12.2 0.1 3.5 2 1 1 3 3 3 0 short chain dehydrogenase Ldh_1_N PF00056.18 gi|257388431|ref|YP_003178204.1| - 0.042 13.6 0.8 0.088 12.6 0.2 1.8 2 0 0 2 2 2 0 lactate/malate dehydrogenase, NAD binding domain ThiF PF00899.16 gi|257388431|ref|YP_003178204.1| - 0.064 13.0 4.2 0.069 12.9 0.8 2.5 2 1 0 2 2 2 0 ThiF family NAD_binding_8 PF13450.1 gi|257388431|ref|YP_003178204.1| - 0.072 13.1 0.1 0.18 11.8 0.1 1.7 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain PRC PF05239.11 gi|257388432|ref|YP_003178205.1| - 6.9e-13 48.2 0.4 8.6e-13 47.9 0.3 1.1 1 0 0 1 1 1 1 PRC-barrel domain DUF835 PF05763.7 gi|257388433|ref|YP_003178206.1| - 0.091 12.3 0.0 0.1 12.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF835) DUF457 PF04307.9 gi|257388434|ref|YP_003178207.1| - 1.3e-07 31.0 6.0 1.6e-07 30.8 4.2 1.3 1 1 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) PALP PF00291.20 gi|257388435|ref|YP_003178208.1| - 1.1e-61 208.7 3.3 1.3e-61 208.4 2.3 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACP_syn_III_C PF08541.5 gi|257388435|ref|YP_003178208.1| - 0.043 13.8 0.4 0.14 12.1 0.1 2.0 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CDP-OH_P_transf PF01066.16 gi|257388436|ref|YP_003178209.1| - 6.2e-10 39.2 10.3 1.8e-09 37.8 7.1 2.0 1 1 0 1 1 1 1 CDP-alcohol phosphatidyltransferase NUDIX PF00293.23 gi|257388438|ref|YP_003178211.1| - 1.6e-15 56.9 1.1 2.5e-15 56.2 0.7 1.3 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.1 gi|257388438|ref|YP_003178211.1| - 0.027 13.8 0.0 0.085 12.2 0.0 1.8 2 0 0 2 2 2 0 NUDIX domain DUF1918 PF08940.6 gi|257388439|ref|YP_003178212.1| - 0.046 13.0 0.0 0.053 12.8 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1918) eIF-1a PF01176.14 gi|257388439|ref|YP_003178212.1| - 0.091 12.1 0.0 0.37 10.2 0.0 1.8 1 1 1 2 2 2 0 Translation initiation factor 1A / IF-1 RNA_binding PF01877.12 gi|257388440|ref|YP_003178213.1| - 1.5e-28 99.1 0.2 1.9e-28 98.8 0.2 1.1 1 0 0 1 1 1 1 RNA binding DUF4164 PF13747.1 gi|257388440|ref|YP_003178213.1| - 3.5 7.8 6.8 2.8 8.1 0.5 2.6 2 1 1 3 3 3 0 Domain of unknown function (DUF4164) RNase_P_p30 PF01876.11 gi|257388441|ref|YP_003178214.1| - 6.4e-32 109.8 0.0 7.8e-32 109.5 0.0 1.1 1 0 0 1 1 1 1 RNase P subunit p30 PHP PF02811.14 gi|257388441|ref|YP_003178214.1| - 3.3e-06 27.0 0.0 4e-06 26.7 0.0 1.1 1 0 0 1 1 1 1 PHP domain O-antigen_lig PF13425.1 gi|257388442|ref|YP_003178215.1| - 0.014 15.3 0.4 0.014 15.3 0.3 1.9 2 0 0 2 2 2 0 O-antigen ligase like membrane protein Form-deh_trans PF09163.6 gi|257388442|ref|YP_003178215.1| - 0.18 11.3 0.1 0.18 11.3 0.1 2.9 3 1 0 3 3 3 0 Formate dehydrogenase N, transmembrane DUF4131 PF13567.1 gi|257388442|ref|YP_003178215.1| - 5.9 6.2 7.4 11 5.3 4.8 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) Methyltransf_31 PF13847.1 gi|257388443|ref|YP_003178216.1| - 6.7e-17 61.4 0.0 1.2e-16 60.6 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|257388443|ref|YP_003178216.1| - 2.2e-15 57.2 0.2 4.5e-15 56.2 0.1 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|257388443|ref|YP_003178216.1| - 6.4e-14 52.2 0.0 1.4e-13 51.1 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|257388443|ref|YP_003178216.1| - 1.1e-11 44.7 0.0 1.9e-11 43.9 0.0 1.4 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|257388443|ref|YP_003178216.1| - 1.9e-11 44.2 0.0 3.3e-11 43.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|257388443|ref|YP_003178216.1| - 4.7e-11 42.9 0.0 8.9e-11 42.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|257388443|ref|YP_003178216.1| - 4.8e-09 35.6 0.1 9e-09 34.7 0.0 1.4 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family MTS PF05175.9 gi|257388443|ref|YP_003178216.1| - 2.7e-08 33.3 0.0 4e-08 32.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_26 PF13659.1 gi|257388443|ref|YP_003178216.1| - 4.4e-08 33.1 1.0 7.2e-08 32.4 0.7 1.5 1 1 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.15 gi|257388443|ref|YP_003178216.1| - 0.0017 17.4 0.0 0.0024 16.9 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase UPF0020 PF01170.13 gi|257388443|ref|YP_003178216.1| - 0.0027 17.2 0.1 0.0039 16.7 0.0 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 PrmA PF06325.8 gi|257388443|ref|YP_003178216.1| - 0.0028 16.8 0.1 0.0038 16.3 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) DREV PF05219.7 gi|257388443|ref|YP_003178216.1| - 0.018 13.9 0.0 0.022 13.6 0.0 1.2 1 0 0 1 1 1 0 DREV methyltransferase tRNA_U5-meth_tr PF05958.6 gi|257388443|ref|YP_003178216.1| - 0.018 13.7 0.0 0.026 13.2 0.0 1.1 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase CMAS PF02353.15 gi|257388443|ref|YP_003178216.1| - 0.059 12.4 0.0 0.074 12.1 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_4 PF02390.12 gi|257388443|ref|YP_003178216.1| - 0.078 12.0 0.0 0.11 11.5 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase PCMT PF01135.14 gi|257388443|ref|YP_003178216.1| - 0.1 12.1 0.0 0.15 11.5 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) RNase_P_Rpp14 PF01900.14 gi|257388444|ref|YP_003178217.1| - 9.2e-21 73.7 0.0 1.2e-20 73.3 0.0 1.2 1 0 0 1 1 1 1 Rpp14/Pop5 family Proteasome PF00227.21 gi|257388445|ref|YP_003178218.1| - 2.9e-55 186.5 0.0 3.6e-55 186.2 0.0 1.1 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.4 gi|257388445|ref|YP_003178218.1| - 2.1e-13 49.3 0.2 3.3e-13 48.6 0.1 1.3 1 0 0 1 1 1 1 Proteasome subunit A N-terminal signature SBDS PF01172.13 gi|257388446|ref|YP_003178219.1| - 1.4e-22 79.3 0.0 2.6e-22 78.4 0.0 1.5 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.5 gi|257388446|ref|YP_003178219.1| - 5.5e-18 64.8 0.0 8.8e-18 64.1 0.0 1.3 1 0 0 1 1 1 1 SBDS protein C-terminal domain DUF382 PF04037.8 gi|257388446|ref|YP_003178219.1| - 0.065 13.0 0.5 0.19 11.5 0.4 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF382) FUN14 PF04930.10 gi|257388447|ref|YP_003178220.1| - 1.9e-19 69.8 3.7 2.2e-19 69.5 2.6 1.0 1 0 0 1 1 1 1 FUN14 family MMR_HSR1 PF01926.18 gi|257388448|ref|YP_003178221.1| - 5e-18 65.1 0.0 9.6e-18 64.2 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU PF00009.22 gi|257388448|ref|YP_003178221.1| - 1e-09 38.0 0.0 2.5e-09 36.8 0.0 1.6 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP-bdg_N PF13167.1 gi|257388448|ref|YP_003178221.1| - 2.7e-09 37.0 0.0 7.1e-09 35.6 0.0 1.7 1 0 0 1 1 1 1 GTP-binding GTPase N-terminal cobW PF02492.14 gi|257388448|ref|YP_003178221.1| - 5.9e-06 25.8 0.2 0.00082 18.8 0.1 2.6 1 1 1 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain FeoB_N PF02421.13 gi|257388448|ref|YP_003178221.1| - 0.00016 20.9 0.6 0.049 12.9 0.1 2.7 3 0 0 3 3 3 2 Ferrous iron transport protein B Miro PF08477.8 gi|257388448|ref|YP_003178221.1| - 0.00031 21.2 0.0 0.00084 19.8 0.0 1.7 1 1 0 1 1 1 1 Miro-like protein AAA_18 PF13238.1 gi|257388448|ref|YP_003178221.1| - 0.0022 18.2 0.0 0.024 14.9 0.0 2.5 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|257388448|ref|YP_003178221.1| - 0.0041 17.9 1.1 0.022 15.6 0.1 2.5 2 1 1 3 3 3 1 AAA domain Ras PF00071.17 gi|257388448|ref|YP_003178221.1| - 0.0058 16.0 0.0 0.024 13.9 0.0 2.0 1 1 0 1 1 1 1 Ras family PduV-EutP PF10662.4 gi|257388448|ref|YP_003178221.1| - 0.01 15.3 0.0 0.24 10.8 0.0 2.2 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_23 PF13476.1 gi|257388448|ref|YP_003178221.1| - 0.049 13.9 0.6 12 6.1 0.4 2.2 2 0 0 2 2 2 0 AAA domain Arf PF00025.16 gi|257388448|ref|YP_003178221.1| - 0.06 12.5 0.0 10 5.3 0.0 2.3 2 0 0 2 2 2 0 ADP-ribosylation factor family Syntaxin PF00804.20 gi|257388448|ref|YP_003178221.1| - 0.064 13.4 0.5 0.18 11.9 0.1 1.9 2 0 0 2 2 1 0 Syntaxin MobB PF03205.9 gi|257388448|ref|YP_003178221.1| - 0.075 12.7 0.0 0.25 11.0 0.0 1.9 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ABC_tran PF00005.22 gi|257388448|ref|YP_003178221.1| - 0.1 12.9 0.0 0.34 11.2 0.0 2.0 1 1 1 2 2 2 0 ABC transporter AAA_33 PF13671.1 gi|257388448|ref|YP_003178221.1| - 0.12 12.1 1.4 0.3 10.9 0.0 2.4 2 1 0 2 2 2 0 AAA domain Carb_kinase PF01256.12 gi|257388449|ref|YP_003178222.1| - 2.9e-50 170.8 3.4 4.1e-50 170.3 2.4 1.2 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.10 gi|257388449|ref|YP_003178222.1| - 3.8e-43 147.0 2.8 5.2e-43 146.5 0.2 2.1 2 0 0 2 2 2 1 YjeF-related protein N-terminus HK PF02110.10 gi|257388449|ref|YP_003178222.1| - 1.7e-07 30.6 0.7 4.1e-07 29.4 0.5 1.6 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Acylphosphatase PF00708.13 gi|257388450|ref|YP_003178223.1| - 1.3e-26 92.4 0.1 1.4e-26 92.3 0.0 1.0 1 0 0 1 1 1 1 Acylphosphatase OGG_N PF07934.7 gi|257388451|ref|YP_003178224.1| - 6.9e-15 55.0 0.0 1.2e-14 54.3 0.0 1.4 1 0 0 1 1 1 1 8-oxoguanine DNA glycosylase, N-terminal domain HhH-GPD PF00730.20 gi|257388451|ref|YP_003178224.1| - 2.7e-11 43.7 0.0 5.8e-11 42.6 0.0 1.5 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein DUF555 PF04475.7 gi|257388452|ref|YP_003178225.1| - 2.2e-41 139.9 0.1 2.9e-41 139.5 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF555) zinc_ribbon_2 PF13240.1 gi|257388452|ref|YP_003178225.1| - 0.13 11.7 0.3 0.23 10.9 0.2 1.4 1 0 0 1 1 1 0 zinc-ribbon domain BUD22 PF09073.5 gi|257388452|ref|YP_003178225.1| - 1.3 8.0 5.5 1.4 7.9 3.8 1.1 1 0 0 1 1 1 0 BUD22 FYDLN_acid PF09538.5 gi|257388452|ref|YP_003178225.1| - 4.3 7.9 13.6 10 6.7 9.4 1.6 1 1 0 1 1 1 0 Protein of unknown function (FYDLN_acid) UPF0058 PF01893.11 gi|257388453|ref|YP_003178226.1| - 8.4e-22 77.0 0.7 8.7e-22 76.9 0.5 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 eIF-5_eIF-2B PF01873.12 gi|257388454|ref|YP_003178227.1| - 3.6e-34 117.0 0.0 4.2e-34 116.8 0.0 1.0 1 0 0 1 1 1 1 Domain found in IF2B/IF5 TF_Zn_Ribbon PF08271.7 gi|257388454|ref|YP_003178227.1| - 0.0087 15.3 0.3 0.019 14.2 0.2 1.6 1 0 0 1 1 1 1 TFIIB zinc-binding Nuclease_act PF08133.6 gi|257388454|ref|YP_003178227.1| - 0.022 14.2 0.0 0.031 13.7 0.0 1.2 1 0 0 1 1 1 0 Anticodon nuclease activator family DZR PF12773.2 gi|257388454|ref|YP_003178227.1| - 0.031 14.1 0.5 0.063 13.0 0.4 1.6 1 0 0 1 1 1 0 Double zinc ribbon Frankia_peptide PF14407.1 gi|257388454|ref|YP_003178227.1| - 0.047 13.4 0.2 0.11 12.2 0.1 1.6 1 0 0 1 1 1 0 Ribosomally synthesized peptide prototyped by Frankia Franean1_4349. Lar_restr_allev PF14354.1 gi|257388454|ref|YP_003178227.1| - 0.069 13.4 1.2 0.78 10.0 0.7 2.1 1 1 1 2 2 2 0 Restriction alleviation protein Lar zf-ribbon_3 PF13248.1 gi|257388454|ref|YP_003178227.1| - 0.082 12.1 2.0 7.2 5.9 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|257388454|ref|YP_003178227.1| - 0.1 12.3 0.1 0.19 11.5 0.0 1.4 1 0 0 1 1 1 0 Transposase zinc-ribbon domain DUF164 PF02591.10 gi|257388454|ref|YP_003178227.1| - 0.15 11.9 0.8 13 5.7 0.0 2.4 1 1 1 2 2 2 0 Putative zinc ribbon domain DUF2387 PF09526.5 gi|257388454|ref|YP_003178227.1| - 0.19 11.6 0.6 0.41 10.6 0.4 1.5 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) DNA_RNApol_7kD PF03604.8 gi|257388454|ref|YP_003178227.1| - 0.39 10.2 1.9 2.4 7.6 1.4 2.0 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Prok-RING_1 PF14446.1 gi|257388454|ref|YP_003178227.1| - 0.69 9.6 2.6 6.2 6.6 1.8 2.1 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 zinc_ribbon_4 PF13717.1 gi|257388454|ref|YP_003178227.1| - 0.75 9.5 3.8 11 5.8 2.0 2.8 2 1 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|257388454|ref|YP_003178227.1| - 0.95 9.0 3.9 10 5.7 2.0 2.8 2 1 0 2 2 2 0 zinc-ribbon domain Auto_anti-p27 PF06677.7 gi|257388454|ref|YP_003178227.1| - 1.8 8.4 4.8 26 4.6 3.5 2.2 1 1 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Zn-ribbon_8 PF09723.5 gi|257388454|ref|YP_003178227.1| - 1.8 8.5 4.4 17 5.4 2.8 2.5 2 1 1 3 3 3 0 Zinc ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|257388455|ref|YP_003178228.1| - 0.00052 19.7 1.1 0.17 11.6 0.1 2.3 2 0 0 2 2 2 2 PhnA Zinc-Ribbon RNHCP PF12647.2 gi|257388455|ref|YP_003178228.1| - 0.0014 18.4 0.4 0.0017 18.1 0.3 1.2 1 0 0 1 1 1 1 RNHCP domain TF_Zn_Ribbon PF08271.7 gi|257388455|ref|YP_003178228.1| - 0.004 16.4 1.3 0.13 11.6 0.1 2.1 2 0 0 2 2 2 1 TFIIB zinc-binding zinc_ribbon_4 PF13717.1 gi|257388455|ref|YP_003178228.1| - 0.005 16.5 2.9 0.22 11.2 0.1 2.1 1 1 2 3 3 3 2 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|257388455|ref|YP_003178228.1| - 0.0052 16.3 2.9 0.17 11.4 0.1 2.1 1 1 1 2 2 2 2 zinc-ribbon domain zf-RING_3 PF14369.1 gi|257388455|ref|YP_003178228.1| - 0.0054 16.7 0.5 1.2 9.1 0.1 2.2 2 0 0 2 2 2 1 zinc-finger zf-CHY PF05495.7 gi|257388455|ref|YP_003178228.1| - 0.0065 16.6 0.3 0.0077 16.3 0.2 1.3 1 0 0 1 1 1 1 CHY zinc finger NMD3 PF04981.8 gi|257388455|ref|YP_003178228.1| - 0.0066 15.5 0.3 0.0066 15.5 0.2 1.0 1 0 0 1 1 1 1 NMD3 family zinc-ribbons_6 PF07191.7 gi|257388455|ref|YP_003178228.1| - 0.0089 15.7 2.1 0.043 13.6 1.5 1.8 1 1 0 1 1 1 1 zinc-ribbons HypA PF01155.14 gi|257388455|ref|YP_003178228.1| - 0.0097 15.5 0.3 0.01 15.4 0.2 1.1 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family DZR PF12773.2 gi|257388455|ref|YP_003178228.1| - 0.014 15.2 2.8 0.028 14.2 1.9 1.5 1 1 0 1 1 1 0 Double zinc ribbon Zn_Tnp_IS1 PF03811.8 gi|257388455|ref|YP_003178228.1| - 0.016 14.6 0.5 4.5 6.8 0.1 2.2 2 0 0 2 2 2 0 InsA N-terminal domain zf-RING_4 PF14570.1 gi|257388455|ref|YP_003178228.1| - 0.024 14.1 1.8 2.7 7.6 0.1 2.3 2 0 0 2 2 2 0 RING/Ubox like zinc-binding domain DUF2296 PF10058.4 gi|257388455|ref|YP_003178228.1| - 0.026 14.2 1.7 0.043 13.5 1.2 1.4 1 1 0 1 1 1 0 Predicted integral membrane metal-binding protein (DUF2296) zf-3CxxC PF13695.1 gi|257388455|ref|YP_003178228.1| - 0.029 14.6 1.3 0.35 11.1 0.0 2.0 1 1 1 2 2 2 0 Zinc-binding domain zf-ribbon_3 PF13248.1 gi|257388455|ref|YP_003178228.1| - 0.038 13.1 1.5 0.69 9.2 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain DUF329 PF03884.9 gi|257388455|ref|YP_003178228.1| - 0.04 13.4 1.0 3.3 7.3 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF329) zf-ISL3 PF14690.1 gi|257388455|ref|YP_003178228.1| - 0.062 13.3 0.7 3.3 7.8 0.0 2.2 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Opy2 PF09463.5 gi|257388455|ref|YP_003178228.1| - 0.08 13.0 1.3 6.7 6.8 0.1 2.1 2 0 0 2 2 2 0 Opy2 protein DUF35_N PF12172.3 gi|257388455|ref|YP_003178228.1| - 0.083 12.8 1.7 1.4 8.8 0.2 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Sgf11 PF08209.6 gi|257388455|ref|YP_003178228.1| - 0.094 12.0 1.5 3.1 7.2 0.1 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Stc1 PF12898.2 gi|257388455|ref|YP_003178228.1| - 0.097 12.7 0.2 0.12 12.4 0.1 1.2 1 0 0 1 1 1 0 Stc1 domain TFIIS_C PF01096.13 gi|257388455|ref|YP_003178228.1| - 0.12 12.0 2.2 3.2 7.4 0.1 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) CpXC PF14353.1 gi|257388455|ref|YP_003178228.1| - 0.12 12.3 2.6 1.2 9.0 0.2 2.1 1 1 1 2 2 2 0 CpXC protein UPF0547 PF10571.4 gi|257388455|ref|YP_003178228.1| - 0.14 11.9 5.6 3.9 7.2 0.1 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF1610 PF07754.6 gi|257388455|ref|YP_003178228.1| - 0.14 12.2 5.3 1.4 9.0 0.9 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) OrfB_Zn_ribbon PF07282.6 gi|257388455|ref|YP_003178228.1| - 0.18 11.5 2.1 0.24 11.1 1.5 1.4 1 1 0 1 1 1 0 Putative transposase DNA-binding domain Ogr_Delta PF04606.7 gi|257388455|ref|YP_003178228.1| - 0.18 11.4 1.9 2 8.1 0.1 2.2 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-TFIIB PF13453.1 gi|257388455|ref|YP_003178228.1| - 0.29 10.3 4.4 0.7 9.1 2.8 1.8 1 1 1 2 2 2 0 Transcription factor zinc-finger zf-HIT PF04438.11 gi|257388455|ref|YP_003178228.1| - 0.3 10.7 3.1 0.67 9.6 0.3 2.1 2 0 0 2 2 2 0 HIT zinc finger Zn_Tnp_IS1595 PF12760.2 gi|257388455|ref|YP_003178228.1| - 0.31 10.9 4.3 1.1 9.1 0.3 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|257388455|ref|YP_003178228.1| - 0.38 10.3 3.5 3.7 7.1 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Rubredoxin PF00301.15 gi|257388455|ref|YP_003178228.1| - 0.39 10.6 0.2 0.39 10.6 0.2 2.2 1 1 1 2 2 2 0 Rubredoxin Zn-ribbon_8 PF09723.5 gi|257388455|ref|YP_003178228.1| - 0.49 10.3 5.0 7.2 6.6 3.5 2.1 1 1 0 1 1 1 0 Zinc ribbon domain TFIIB PF00382.14 gi|257388456|ref|YP_003178229.1| - 2.8e-40 135.9 0.3 3.5e-19 68.3 0.0 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|257388456|ref|YP_003178229.1| - 6.8e-17 60.5 2.7 1.5e-16 59.3 1.9 1.6 1 0 0 1 1 1 1 TFIIB zinc-binding Cyclin_C PF02984.14 gi|257388456|ref|YP_003178229.1| - 0.0023 17.8 0.0 0.33 10.8 0.0 2.4 2 0 0 2 2 2 1 Cyclin, C-terminal domain Sigma70_r4 PF04545.11 gi|257388456|ref|YP_003178229.1| - 0.02 14.1 0.0 0.32 10.3 0.0 2.6 2 0 0 2 2 2 0 Sigma-70, region 4 DZR PF12773.2 gi|257388456|ref|YP_003178229.1| - 0.025 14.3 0.9 0.056 13.2 0.7 1.5 1 0 0 1 1 1 0 Double zinc ribbon OrfB_Zn_ribbon PF07282.6 gi|257388456|ref|YP_003178229.1| - 0.066 12.8 0.7 0.15 11.7 0.5 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Prim_Zn_Ribbon PF08273.7 gi|257388456|ref|YP_003178229.1| - 0.094 12.8 0.6 0.21 11.6 0.4 1.6 1 0 0 1 1 1 0 Zinc-binding domain of primase-helicase Cyclin_N PF00134.18 gi|257388456|ref|YP_003178229.1| - 0.11 12.0 0.1 0.24 10.9 0.0 1.7 2 0 0 2 2 2 0 Cyclin, N-terminal domain NinF PF05810.7 gi|257388456|ref|YP_003178229.1| - 0.18 11.6 1.6 0.36 10.6 1.1 1.5 1 0 0 1 1 1 0 NinF protein zf-ribbon_3 PF13248.1 gi|257388456|ref|YP_003178229.1| - 0.28 10.4 3.1 0.87 8.8 2.2 1.9 1 1 0 1 1 1 0 zinc-ribbon domain Nudix_N_2 PF14803.1 gi|257388456|ref|YP_003178229.1| - 0.38 10.4 3.6 1.3 8.7 2.5 2.0 1 1 0 1 1 1 0 Nudix N-terminal PhnA_Zn_Ribbon PF08274.7 gi|257388456|ref|YP_003178229.1| - 0.43 10.3 3.0 0.79 9.5 2.1 1.4 1 0 0 1 1 1 0 PhnA Zinc-Ribbon DUF357 PF04010.8 gi|257388457|ref|YP_003178230.1| - 6.7e-29 99.4 0.1 7.7e-29 99.2 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF357) Pyr_redox_2 PF07992.9 gi|257388458|ref|YP_003178231.1| - 4.2e-23 82.2 0.0 6.5e-23 81.6 0.0 1.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|257388458|ref|YP_003178231.1| - 5.1e-14 52.4 0.6 1.9e-12 47.3 0.1 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|257388458|ref|YP_003178231.1| - 8.8e-12 45.5 0.0 3.8e-09 36.9 0.0 2.4 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|257388458|ref|YP_003178231.1| - 3.2e-07 29.5 3.5 0.0035 16.2 0.2 2.8 2 1 1 3 3 3 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|257388458|ref|YP_003178231.1| - 1.2e-05 24.3 1.4 0.0027 16.6 0.0 3.3 3 1 1 4 4 4 1 FAD binding domain NAD_binding_8 PF13450.1 gi|257388458|ref|YP_003178231.1| - 6e-05 22.9 0.0 0.00024 21.0 0.0 2.0 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.9 gi|257388458|ref|YP_003178231.1| - 0.0007 18.1 0.0 0.58 8.5 0.0 3.1 4 0 0 4 4 4 2 HI0933-like protein NAD_binding_7 PF13241.1 gi|257388458|ref|YP_003178231.1| - 0.0062 16.7 0.0 0.059 13.6 0.0 2.4 2 1 0 2 2 2 1 Putative NAD(P)-binding FAD_oxidored PF12831.2 gi|257388458|ref|YP_003178231.1| - 0.029 13.4 0.1 0.055 12.5 0.1 1.6 1 0 0 1 1 1 0 FAD dependent oxidoreductase GIDA PF01134.17 gi|257388458|ref|YP_003178231.1| - 0.044 12.6 0.6 1 8.1 0.0 3.0 4 0 0 4 4 4 0 Glucose inhibited division protein A Thi4 PF01946.12 gi|257388458|ref|YP_003178231.1| - 0.072 12.1 0.0 0.79 8.7 0.0 2.1 2 0 0 2 2 2 0 Thi4 family NAD_binding_9 PF13454.1 gi|257388458|ref|YP_003178231.1| - 0.081 12.7 4.8 1 9.1 0.0 3.7 3 1 1 4 4 4 0 FAD-NAD(P)-binding RibD_C PF01872.12 gi|257388460|ref|YP_003178233.1| - 5.8e-50 169.6 0.4 6.5e-50 169.5 0.3 1.0 1 0 0 1 1 1 1 RibD C-terminal domain TerB-C PF15615.1 gi|257388460|ref|YP_003178233.1| - 0.057 13.6 0.2 0.086 13.0 0.1 1.3 1 0 0 1 1 1 0 TerB-C domain tRNA_anti-codon PF01336.20 gi|257388462|ref|YP_003178235.1| - 3.1e-06 26.9 2.3 0.24 11.2 0.0 4.0 4 0 0 4 4 4 3 OB-fold nucleic acid binding domain Metallophos_2 PF12850.2 gi|257388464|ref|YP_003178237.1| - 5.9e-08 32.7 0.2 1.2e-07 31.7 0.1 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|257388464|ref|YP_003178237.1| - 2.1e-07 30.5 0.2 3.5e-05 23.2 0.0 2.1 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase DUF834 PF05754.9 gi|257388464|ref|YP_003178237.1| - 1.8e-05 24.4 0.3 5.5e-05 22.8 0.2 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF834) Metallophos_3 PF14582.1 gi|257388464|ref|YP_003178237.1| - 0.12 11.5 0.1 8.7 5.4 0.0 2.1 1 1 1 2 2 2 0 Metallophosphoesterase, calcineurin superfamily UPF0547 PF10571.4 gi|257388465|ref|YP_003178238.1| - 0.00031 20.3 5.6 0.036 13.7 0.1 2.1 2 0 0 2 2 2 2 Uncharacterised protein family UPF0547 zf-RING_4 PF14570.1 gi|257388465|ref|YP_003178238.1| - 0.00098 18.6 0.4 0.38 10.3 0.0 2.1 2 0 0 2 2 2 2 RING/Ubox like zinc-binding domain DZR PF12773.2 gi|257388465|ref|YP_003178238.1| - 0.013 15.2 0.3 0.019 14.7 0.2 1.3 1 1 0 1 1 1 0 Double zinc ribbon Terminase_GpA PF05876.7 gi|257388465|ref|YP_003178238.1| - 0.02 13.3 0.2 0.022 13.1 0.1 1.0 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) Zn-ribbon_8 PF09723.5 gi|257388465|ref|YP_003178238.1| - 0.032 14.1 1.5 3.9 7.5 0.1 2.1 2 0 0 2 2 2 0 Zinc ribbon domain zf-C3HC4_3 PF13920.1 gi|257388465|ref|YP_003178238.1| - 0.049 13.2 0.2 4.1 7.1 0.0 2.0 2 0 0 2 2 2 0 Zinc finger, C3HC4 type (RING finger) zf-TFIIB PF13453.1 gi|257388465|ref|YP_003178238.1| - 0.15 11.2 1.2 6.7 5.9 0.1 2.1 2 0 0 2 2 2 0 Transcription factor zinc-finger zf-dskA_traR PF01258.12 gi|257388465|ref|YP_003178238.1| - 0.16 11.7 5.1 0.28 10.9 0.2 2.1 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger Opy2 PF09463.5 gi|257388465|ref|YP_003178238.1| - 0.18 11.8 1.7 4.1 7.5 0.1 2.1 2 0 0 2 2 2 0 Opy2 protein DUF35_N PF12172.3 gi|257388465|ref|YP_003178238.1| - 0.26 11.2 3.4 8.4 6.4 0.2 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) PhnA_Zn_Ribbon PF08274.7 gi|257388465|ref|YP_003178238.1| - 1.1 9.0 3.9 7.9 6.3 2.6 2.1 1 1 0 1 1 1 0 PhnA Zinc-Ribbon Tetraspannin PF00335.15 gi|257388466|ref|YP_003178239.1| - 0.57 9.4 3.0 0.87 8.8 2.1 1.2 1 1 0 1 1 1 0 Tetraspanin family DUF2892 PF11127.3 gi|257388466|ref|YP_003178239.1| - 1 9.2 9.6 0.3 10.9 2.5 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2892) Peripla_BP_6 PF13458.1 gi|257388467|ref|YP_003178240.1| - 1.9e-30 106.3 10.0 2.9e-30 105.7 6.9 1.3 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.23 gi|257388467|ref|YP_003178240.1| - 1.2e-27 96.6 0.2 1.7e-27 96.1 0.1 1.2 1 0 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.1 gi|257388467|ref|YP_003178240.1| - 1.2e-06 27.5 0.1 3e-05 22.9 0.0 2.3 2 0 0 2 2 2 1 Periplasmic binding protein domain TAT_signal PF10518.4 gi|257388467|ref|YP_003178240.1| - 0.018 14.9 1.0 0.018 14.9 0.7 2.5 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence DUF4649 PF15507.1 gi|257388467|ref|YP_003178240.1| - 0.11 12.2 0.0 0.26 11.0 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4649) MCPsignal PF00015.16 gi|257388468|ref|YP_003178241.1| - 9.2e-51 172.4 73.2 3.1e-49 167.4 25.1 4.6 1 1 1 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.20 gi|257388468|ref|YP_003178241.1| - 2.5e-10 40.3 0.5 2.5e-10 40.3 0.4 6.3 7 2 1 8 8 6 2 HAMP domain DUF948 PF06103.6 gi|257388468|ref|YP_003178241.1| - 0.0004 20.2 33.7 0.0067 16.2 1.0 6.5 5 1 2 7 7 6 2 Bacterial protein of unknown function (DUF948) Laminin_II PF06009.7 gi|257388468|ref|YP_003178241.1| - 0.0017 18.1 44.0 0.091 12.5 3.2 5.6 2 2 3 6 6 6 2 Laminin Domain II Reo_sigmaC PF04582.7 gi|257388468|ref|YP_003178241.1| - 0.0017 17.5 14.2 0.0017 17.5 9.9 4.2 3 1 1 4 4 4 2 Reovirus sigma C capsid protein Laminin_I PF06008.9 gi|257388468|ref|YP_003178241.1| - 0.011 15.1 37.0 0.017 14.4 3.2 4.1 2 1 1 3 3 3 0 Laminin Domain I IncA PF04156.9 gi|257388468|ref|YP_003178241.1| - 0.011 15.3 36.8 35 3.9 10.6 5.5 2 1 1 3 3 3 0 IncA protein Seryl_tRNA_N PF02403.17 gi|257388468|ref|YP_003178241.1| - 0.1 12.6 34.5 0.42 10.6 1.1 5.8 3 2 2 5 5 5 0 Seryl-tRNA synthetase N-terminal domain Fib_alpha PF08702.5 gi|257388468|ref|YP_003178241.1| - 0.13 12.4 25.6 1.7 8.7 4.6 5.1 2 2 3 5 5 5 0 Fibrinogen alpha/beta chain family WEMBL PF05701.6 gi|257388468|ref|YP_003178241.1| - 0.19 10.1 50.7 0.053 11.9 3.0 3.4 1 1 0 3 3 3 0 Weak chloroplast movement under blue light DUF1664 PF07889.7 gi|257388468|ref|YP_003178241.1| - 0.21 11.4 34.5 0.43 10.3 1.7 5.7 3 2 2 5 5 5 0 Protein of unknown function (DUF1664) BLOC1_2 PF10046.4 gi|257388468|ref|YP_003178241.1| - 0.29 11.2 34.9 2.7 8.2 0.3 6.4 3 2 3 6 6 6 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Spc7 PF08317.6 gi|257388468|ref|YP_003178241.1| - 0.32 9.6 34.6 0.27 9.8 5.9 4.0 1 1 3 4 4 4 0 Spc7 kinetochore protein Syntaxin PF00804.20 gi|257388468|ref|YP_003178241.1| - 0.35 11.0 33.4 3 8.0 2.5 5.4 3 2 2 5 5 5 0 Syntaxin TMP_2 PF06791.8 gi|257388468|ref|YP_003178241.1| - 0.56 9.7 41.5 0.029 13.9 3.4 5.7 1 1 4 5 5 5 0 Prophage tail length tape measure protein AKNA PF12443.3 gi|257388468|ref|YP_003178241.1| - 0.58 10.2 7.7 0.14 12.2 0.4 3.2 3 0 0 3 3 3 0 AT-hook-containing transcription factor Flu_NS2 PF00601.14 gi|257388468|ref|YP_003178241.1| - 0.77 10.0 5.0 4.7 7.4 0.1 3.9 3 2 1 4 4 4 0 Influenza non-structural protein (NS2) RmuC PF02646.11 gi|257388468|ref|YP_003178241.1| - 1.2 7.8 25.7 0.11 11.3 0.8 5.3 5 1 1 6 6 6 0 RmuC family CorA PF01544.13 gi|257388468|ref|YP_003178241.1| - 1.6 7.6 19.8 0.38 9.7 2.3 3.9 2 2 0 3 3 3 0 CorA-like Mg2+ transporter protein APG17 PF04108.7 gi|257388468|ref|YP_003178241.1| - 6.8 5.3 31.3 2.1 7.0 8.4 3.5 1 1 0 2 2 2 0 Autophagy protein Apg17 V_ATPase_I PF01496.14 gi|257388468|ref|YP_003178241.1| - 8 4.1 26.3 5.3 4.7 13.8 2.7 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family DEAD_assoc PF08494.6 gi|257388469|ref|YP_003178242.1| - 1e-39 136.1 0.0 2.3e-39 135.0 0.0 1.6 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.24 gi|257388469|ref|YP_003178242.1| - 2.1e-30 105.4 0.0 1.9e-29 102.2 0.0 2.2 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.26 gi|257388469|ref|YP_003178242.1| - 6.1e-17 61.2 0.0 1.4e-16 60.0 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|257388469|ref|YP_003178242.1| - 1.7e-07 31.2 0.0 3.5e-07 30.2 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit AAA_19 PF13245.1 gi|257388469|ref|YP_003178242.1| - 3.2e-05 23.5 0.5 0.0012 18.5 0.0 3.4 3 0 0 3 3 3 1 Part of AAA domain SNF2_N PF00176.18 gi|257388469|ref|YP_003178242.1| - 0.0011 17.7 0.0 0.0032 16.3 0.0 1.6 2 0 0 2 2 2 1 SNF2 family N-terminal domain AAA_25 PF13481.1 gi|257388469|ref|YP_003178242.1| - 0.0014 18.0 2.6 0.0088 15.4 0.4 2.9 2 1 0 2 2 2 1 AAA domain Pentapeptide_3 PF13576.1 gi|257388470|ref|YP_003178243.1| - 3.9e-49 164.2 127.8 9.4e-10 38.2 3.6 11.0 4 2 8 13 13 13 11 Pentapeptide repeats (9 copies) Pentapeptide_4 PF13599.1 gi|257388470|ref|YP_003178243.1| - 2.4e-12 46.4 33.2 0.005 16.6 2.3 7.5 1 1 5 7 7 7 6 Pentapeptide repeats (9 copies) Pentapeptide PF00805.17 gi|257388470|ref|YP_003178243.1| - 7.4e-06 25.0 4.6 6.1 6.1 0.0 8.2 6 2 0 6 6 6 3 Pentapeptide repeats (8 copies) Ion_trans_2 PF07885.11 gi|257388470|ref|YP_003178243.1| - 4.2e-05 23.1 2.7 7.2e-05 22.4 1.6 1.6 1 1 0 1 1 1 1 Ion channel Bactofilin PF04519.8 gi|257388471|ref|YP_003178244.1| - 0.00041 20.3 3.5 0.00048 20.0 2.4 1.2 1 0 0 1 1 1 1 Polymer-forming cytoskeletal DUF342 PF03961.8 gi|257388471|ref|YP_003178244.1| - 0.018 13.5 1.7 0.021 13.2 1.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF342) DUF4098 PF13345.1 gi|257388471|ref|YP_003178244.1| - 0.1 12.5 3.0 0.38 10.7 2.1 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4098) Sarcoglycan_1 PF04790.8 gi|257388471|ref|YP_003178244.1| - 0.17 11.0 0.6 0.44 9.6 0.4 1.7 1 1 0 1 1 1 0 Sarcoglycan complex subunit protein Fil_haemagg_2 PF13332.1 gi|257388471|ref|YP_003178244.1| - 0.18 11.5 3.8 8 6.2 0.1 2.9 1 1 2 3 3 3 0 Haemagluttinin repeat DZR PF12773.2 gi|257388472|ref|YP_003178245.1| - 0.011 15.5 0.2 0.02 14.6 0.1 1.4 1 0 0 1 1 1 0 Double zinc ribbon DUF3060 PF11259.3 gi|257388472|ref|YP_003178245.1| - 0.034 13.7 0.6 0.18 11.4 0.2 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF3060) GFA PF04828.9 gi|257388472|ref|YP_003178245.1| - 0.11 12.4 1.3 0.32 10.9 0.1 2.2 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme NOB1_Zn_bind PF08772.6 gi|257388472|ref|YP_003178245.1| - 0.28 11.0 1.2 0.46 10.3 0.0 1.9 2 0 0 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zf-RING_3 PF14369.1 gi|257388472|ref|YP_003178245.1| - 0.35 10.8 3.9 14 5.8 0.1 2.8 3 0 0 3 3 3 0 zinc-finger DUF2617 PF10936.3 gi|257388473|ref|YP_003178246.1| - 1.1e-06 28.3 3.0 1.1e-05 25.0 2.1 2.6 1 1 0 1 1 1 1 Protein of unknown function DUF2617 Spermine_synth PF01564.12 gi|257388474|ref|YP_003178247.1| - 2.2e-15 56.2 0.0 3.2e-15 55.7 0.0 1.1 1 0 0 1 1 1 1 Spermine/spermidine synthase Methyltransf_26 PF13659.1 gi|257388474|ref|YP_003178247.1| - 0.0052 16.8 0.0 0.0086 16.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_30 PF05430.6 gi|257388474|ref|YP_003178247.1| - 0.027 14.1 0.0 0.046 13.3 0.0 1.3 1 0 0 1 1 1 0 S-adenosyl-L-methionine-dependent methyltransferase Methyltransf_23 PF13489.1 gi|257388474|ref|YP_003178247.1| - 0.027 14.1 0.0 0.063 13.0 0.0 1.6 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_18 PF12847.2 gi|257388474|ref|YP_003178247.1| - 0.055 14.0 0.0 0.14 12.7 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain DUF4131 PF13567.1 gi|257388474|ref|YP_003178247.1| - 4 6.8 7.1 1.1 8.6 0.1 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF4131) MutS_V PF00488.16 gi|257388476|ref|YP_003178249.1| - 2e-10 40.4 0.0 3.2e-10 39.8 0.0 1.4 1 0 0 1 1 1 1 MutS domain V AAA_10 PF12846.2 gi|257388476|ref|YP_003178249.1| - 0.00068 19.1 0.6 0.03 13.7 0.0 3.0 2 2 0 3 3 3 1 AAA-like domain AAA_14 PF13173.1 gi|257388476|ref|YP_003178249.1| - 0.014 15.2 0.0 0.026 14.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|257388476|ref|YP_003178249.1| - 0.017 15.1 0.0 0.017 15.1 0.0 2.7 3 1 0 3 3 3 0 AAA domain AAA_21 PF13304.1 gi|257388476|ref|YP_003178249.1| - 0.017 15.1 0.0 0.032 14.1 0.0 1.4 2 0 0 2 2 2 0 AAA domain IMS_HHH PF11798.3 gi|257388476|ref|YP_003178249.1| - 0.14 12.2 0.0 0.34 11.0 0.0 1.7 1 0 0 1 1 1 0 IMS family HHH motif Copper-bind PF00127.15 gi|257388479|ref|YP_003178252.1| - 3.7e-36 123.3 3.2 6.1e-17 61.6 0.1 2.9 2 2 0 2 2 2 2 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.1 gi|257388479|ref|YP_003178252.1| - 1.4e-15 57.0 0.0 1.3e-06 28.2 0.0 2.1 2 0 0 2 2 2 2 Cupredoxin-like domain UnbV_ASPIC PF07593.7 gi|257388479|ref|YP_003178252.1| - 0.0091 15.6 0.4 6.3 6.5 0.0 2.8 2 0 0 2 2 2 2 ASPIC and UnbV TAT_signal PF10518.4 gi|257388479|ref|YP_003178252.1| - 3.7 7.7 11.1 0.23 11.5 2.7 2.8 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence Hydrolase_3 PF08282.7 gi|257388480|ref|YP_003178253.1| - 3.5e-09 36.6 0.0 0.0009 18.8 0.0 2.2 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.2 gi|257388480|ref|YP_003178253.1| - 2.7e-05 24.4 0.1 0.00012 22.3 0.1 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase S6PP PF05116.8 gi|257388480|ref|YP_003178253.1| - 0.028 13.7 0.0 0.63 9.2 0.0 2.2 2 0 0 2 2 2 0 Sucrose-6F-phosphate phosphohydrolase ZapA PF05164.8 gi|257388480|ref|YP_003178253.1| - 0.16 11.9 0.0 3.1 7.8 0.0 2.5 2 0 0 2 2 2 0 Cell division protein ZapA ADH_N PF08240.7 gi|257388482|ref|YP_003178255.1| - 4.8e-26 90.6 1.2 4.8e-26 90.6 0.8 1.9 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.21 gi|257388482|ref|YP_003178255.1| - 5.9e-23 80.8 1.9 9.4e-23 80.1 1.3 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N_assoc PF13823.1 gi|257388482|ref|YP_003178255.1| - 4.6e-06 26.1 0.1 1.3e-05 24.7 0.0 1.9 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-associated ADH_zinc_N_2 PF13602.1 gi|257388482|ref|YP_003178255.1| - 0.002 18.9 0.6 0.004 18.0 0.1 1.7 2 0 0 2 2 2 1 Zinc-binding dehydrogenase FAD_binding_2 PF00890.19 gi|257388483|ref|YP_003178256.1| - 4.6e-10 38.9 0.3 5.2e-10 38.7 0.2 1.0 1 0 0 1 1 1 1 FAD binding domain DAO PF01266.19 gi|257388483|ref|YP_003178256.1| - 7.6e-10 38.2 0.3 8e-10 38.1 0.2 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|257388483|ref|YP_003178256.1| - 1.4e-07 31.5 0.1 1.5e-07 31.5 0.1 1.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|257388483|ref|YP_003178256.1| - 1.1e-06 27.7 0.2 1.2e-06 27.7 0.1 1.0 1 0 0 1 1 1 1 Glucose inhibited division protein A FAD_oxidored PF12831.2 gi|257388483|ref|YP_003178256.1| - 1.2e-06 27.9 0.9 1.2e-06 27.9 0.6 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|257388483|ref|YP_003178256.1| - 1.2e-06 28.4 0.1 1.3e-06 28.3 0.1 1.2 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.14 gi|257388483|ref|YP_003178256.1| - 1.3e-06 27.7 0.1 1.3e-06 27.7 0.1 1.0 1 0 0 1 1 1 1 FAD binding domain Thi4 PF01946.12 gi|257388483|ref|YP_003178256.1| - 1.2e-05 24.5 0.3 1.4e-05 24.3 0.2 1.1 1 0 0 1 1 1 1 Thi4 family HI0933_like PF03486.9 gi|257388483|ref|YP_003178256.1| - 3e-05 22.6 0.2 3.5e-05 22.4 0.1 1.0 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox PF00070.22 gi|257388483|ref|YP_003178256.1| - 4.6e-05 23.7 0.1 4.8e-05 23.6 0.1 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.7 gi|257388483|ref|YP_003178256.1| - 0.0005 19.1 0.1 0.00055 18.9 0.1 1.0 1 0 0 1 1 1 1 Lycopene cyclase protein 3HCDH_N PF02737.13 gi|257388483|ref|YP_003178256.1| - 0.00052 19.7 0.1 0.00054 19.6 0.1 1.1 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.16 gi|257388483|ref|YP_003178256.1| - 0.0013 18.3 0.2 0.0013 18.2 0.1 1.1 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox_3 PF13738.1 gi|257388483|ref|YP_003178256.1| - 0.0056 16.7 0.0 0.0057 16.7 0.0 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.9 gi|257388483|ref|YP_003178256.1| - 0.019 13.6 0.0 0.019 13.6 0.0 1.1 1 0 0 1 1 1 0 Tryptophan halogenase NAD_binding_7 PF13241.1 gi|257388483|ref|YP_003178256.1| - 0.075 13.2 0.1 0.077 13.2 0.0 1.1 1 0 0 1 1 1 0 Putative NAD(P)-binding UDPG_MGDP_dh_N PF03721.9 gi|257388483|ref|YP_003178256.1| - 0.088 12.1 0.1 0.09 12.1 0.0 1.2 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Peripla_BP_2 PF01497.13 gi|257388484|ref|YP_003178257.1| - 1.5e-11 43.9 0.0 2.4e-11 43.2 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein TAT_signal PF10518.4 gi|257388484|ref|YP_003178257.1| - 0.076 13.0 0.0 0.12 12.4 0.0 1.3 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence ABC_tran PF00005.22 gi|257388485|ref|YP_003178258.1| - 2.2e-30 105.7 0.0 3.8e-30 104.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|257388485|ref|YP_003178258.1| - 2.8e-12 47.2 0.3 1.5e-05 25.1 0.0 2.2 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|257388485|ref|YP_003178258.1| - 2.4e-11 43.2 0.0 5e-06 25.9 0.0 2.1 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_25 PF13481.1 gi|257388485|ref|YP_003178258.1| - 7e-07 28.8 2.2 5.1e-06 26.0 1.5 2.1 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|257388485|ref|YP_003178258.1| - 2.5e-06 26.9 0.2 4.6e-06 26.0 0.1 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|257388485|ref|YP_003178258.1| - 1.6e-05 25.0 2.1 0.00017 21.7 1.5 2.1 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|257388485|ref|YP_003178258.1| - 2.9e-05 23.9 0.0 0.00011 22.1 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_15 PF13175.1 gi|257388485|ref|YP_003178258.1| - 5.9e-05 22.2 0.0 0.25 10.3 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_16 PF13191.1 gi|257388485|ref|YP_003178258.1| - 9.1e-05 22.5 4.4 0.00093 19.2 3.0 2.2 1 1 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.1 gi|257388485|ref|YP_003178258.1| - 0.00034 21.4 0.8 0.0012 19.6 0.6 2.3 1 1 0 1 1 1 1 AAA domain ABC_ATPase PF09818.4 gi|257388485|ref|YP_003178258.1| - 0.00054 18.6 2.6 0.16 10.4 0.1 2.8 2 1 0 2 2 2 2 Predicted ATPase of the ABC class AAA_23 PF13476.1 gi|257388485|ref|YP_003178258.1| - 0.00099 19.4 0.0 0.0015 18.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain MobB PF03205.9 gi|257388485|ref|YP_003178258.1| - 0.0015 18.2 0.1 0.0045 16.6 0.0 1.8 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B SRP54 PF00448.17 gi|257388485|ref|YP_003178258.1| - 0.0025 17.2 0.0 0.005 16.3 0.0 1.5 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_30 PF13604.1 gi|257388485|ref|YP_003178258.1| - 0.0026 17.3 0.3 0.0062 16.1 0.1 1.9 1 1 0 1 1 1 1 AAA domain NACHT PF05729.7 gi|257388485|ref|YP_003178258.1| - 0.0031 17.1 0.6 0.0052 16.4 0.1 1.6 2 0 0 2 2 1 1 NACHT domain AAA_14 PF13173.1 gi|257388485|ref|YP_003178258.1| - 0.0045 16.8 0.0 0.011 15.6 0.0 1.7 2 0 0 2 2 1 1 AAA domain UPF0079 PF02367.12 gi|257388485|ref|YP_003178258.1| - 0.0055 16.3 0.1 0.012 15.2 0.1 1.5 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 Mg_chelatase PF01078.16 gi|257388485|ref|YP_003178258.1| - 0.0071 15.5 0.1 0.028 13.5 0.0 1.9 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA PF00004.24 gi|257388485|ref|YP_003178258.1| - 0.0089 16.2 0.3 0.029 14.5 0.0 1.9 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) MMR_HSR1 PF01926.18 gi|257388485|ref|YP_003178258.1| - 0.01 15.7 0.4 0.051 13.5 0.3 2.1 1 1 0 1 1 1 0 50S ribosome-binding GTPase DUF258 PF03193.11 gi|257388485|ref|YP_003178258.1| - 0.011 14.9 0.3 0.017 14.2 0.2 1.5 1 1 0 1 1 1 0 Protein of unknown function, DUF258 AAA_10 PF12846.2 gi|257388485|ref|YP_003178258.1| - 0.012 15.0 0.2 0.025 14.0 0.0 1.5 2 0 0 2 2 2 0 AAA-like domain ATP_bind_1 PF03029.12 gi|257388485|ref|YP_003178258.1| - 0.013 15.0 0.2 1.4 8.4 0.0 2.1 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein AAA_18 PF13238.1 gi|257388485|ref|YP_003178258.1| - 0.017 15.4 0.6 0.04 14.2 0.4 1.6 1 1 0 1 1 1 0 AAA domain MukB PF04310.7 gi|257388485|ref|YP_003178258.1| - 0.02 14.2 0.1 0.049 12.9 0.0 1.6 1 0 0 1 1 1 0 MukB N-terminal AAA_28 PF13521.1 gi|257388485|ref|YP_003178258.1| - 0.04 13.8 0.1 0.079 12.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|257388485|ref|YP_003178258.1| - 0.043 12.9 0.6 0.093 11.8 0.1 1.7 2 0 0 2 2 2 0 Zeta toxin Arch_ATPase PF01637.13 gi|257388485|ref|YP_003178258.1| - 0.043 13.5 0.0 0.078 12.6 0.0 1.5 2 0 0 2 2 1 0 Archaeal ATPase APS_kinase PF01583.15 gi|257388485|ref|YP_003178258.1| - 0.046 13.3 0.1 0.083 12.5 0.1 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase HD_4 PF13328.1 gi|257388485|ref|YP_003178258.1| - 0.054 13.1 0.4 0.096 12.3 0.3 1.4 1 0 0 1 1 1 0 HD domain RNA_helicase PF00910.17 gi|257388485|ref|YP_003178258.1| - 0.056 13.6 0.0 0.096 12.8 0.0 1.5 1 0 0 1 1 1 0 RNA helicase CobA_CobO_BtuR PF02572.10 gi|257388485|ref|YP_003178258.1| - 0.056 13.0 0.1 0.11 12.1 0.1 1.6 1 0 0 1 1 1 0 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP SbcCD_C PF13558.1 gi|257388485|ref|YP_003178258.1| - 0.074 12.9 0.2 1.1 9.2 0.2 2.5 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_19 PF13245.1 gi|257388485|ref|YP_003178258.1| - 0.079 12.7 0.2 0.21 11.3 0.2 1.7 1 0 0 1 1 1 0 Part of AAA domain cobW PF02492.14 gi|257388485|ref|YP_003178258.1| - 0.082 12.3 1.3 0.15 11.4 0.1 1.9 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_5 PF07728.9 gi|257388485|ref|YP_003178258.1| - 0.091 12.4 0.2 0.31 10.7 0.1 1.9 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) NTPase_1 PF03266.10 gi|257388485|ref|YP_003178258.1| - 0.12 12.0 0.5 2.1 8.0 0.0 2.2 2 0 0 2 2 2 0 NTPase ATP-synt_ab PF00006.20 gi|257388485|ref|YP_003178258.1| - 0.13 11.7 0.1 8.6 5.7 0.0 2.1 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain Rad17 PF03215.10 gi|257388485|ref|YP_003178258.1| - 0.19 10.3 0.0 0.3 9.7 0.0 1.2 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein FecCD PF01032.13 gi|257388486|ref|YP_003178259.1| - 2.2e-89 299.3 36.4 2.8e-89 299.0 25.2 1.0 1 0 0 1 1 1 1 FecCD transport family Sec62 PF03839.11 gi|257388486|ref|YP_003178259.1| - 2.5 7.4 4.5 2.2 7.6 0.0 2.5 2 1 0 2 2 2 0 Translocation protein Sec62 SBF PF01758.11 gi|257388487|ref|YP_003178260.1| - 1.6e-11 43.9 15.5 1.6e-11 43.9 10.8 1.6 2 0 0 2 2 2 1 Sodium Bile acid symporter family DUF4137 PF13593.1 gi|257388487|ref|YP_003178260.1| - 2.6e-05 23.4 24.5 4.7e-05 22.6 17.0 1.5 1 1 0 1 1 1 1 SBF-like CPA transporter family (DUF4137) Virul_fac_BrkB PF03631.10 gi|257388488|ref|YP_003178261.1| - 2.8e-46 157.9 30.6 3.2e-46 157.8 21.2 1.0 1 0 0 1 1 1 1 Virulence factor BrkB Rax2 PF12768.2 gi|257388488|ref|YP_003178261.1| - 0.013 14.7 0.3 0.013 14.7 0.2 1.6 2 0 0 2 2 2 0 Cortical protein marker for cell polarity AMP-binding PF00501.23 gi|257388489|ref|YP_003178262.1| - 4.3e-43 147.2 0.1 7.4e-43 146.4 0.0 1.4 2 0 0 2 2 2 1 AMP-binding enzyme Hemerythrin PF01814.18 gi|257388489|ref|YP_003178262.1| - 1.3e-12 48.0 8.1 1e-11 45.1 5.1 2.3 2 0 0 2 2 2 1 Hemerythrin HHE cation binding domain Pyridox_ox_2 PF12900.2 gi|257388490|ref|YP_003178263.1| - 3.4e-16 59.3 0.3 3.8e-16 59.1 0.2 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_oxidase PF01243.15 gi|257388490|ref|YP_003178263.1| - 2.1e-08 34.0 0.0 3.3e-08 33.4 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase HMA PF00403.21 gi|257388491|ref|YP_003178264.1| - 2.9e-18 65.7 0.7 3.2e-18 65.6 0.5 1.0 1 0 0 1 1 1 1 Heavy-metal-associated domain AAA_27 PF13514.1 gi|257388491|ref|YP_003178264.1| - 0.03 12.0 1.0 0.031 11.9 0.7 1.0 1 0 0 1 1 1 0 AAA domain Thioredoxin_3 PF13192.1 gi|257388491|ref|YP_003178264.1| - 0.23 11.3 1.1 0.42 10.4 0.6 1.7 1 1 1 2 2 2 0 Thioredoxin domain Histidinol_dh PF00815.15 gi|257388492|ref|YP_003178265.1| - 3.2e-147 490.4 7.3 3.6e-147 490.2 5.1 1.0 1 0 0 1 1 1 1 Histidinol dehydrogenase Band_7 PF01145.20 gi|257388492|ref|YP_003178265.1| - 0.15 11.9 4.3 1.3 8.9 0.7 2.5 2 0 0 2 2 2 0 SPFH domain / Band 7 family PB1 PF00564.19 gi|257388492|ref|YP_003178265.1| - 0.48 10.1 1.7 0.88 9.2 0.1 2.0 2 0 0 2 2 2 0 PB1 domain Acetyltransf_1 PF00583.19 gi|257388493|ref|YP_003178266.1| - 8.5e-16 57.7 0.1 1.2e-15 57.2 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|257388493|ref|YP_003178266.1| - 2.3e-15 56.7 0.2 2.7e-15 56.5 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|257388493|ref|YP_003178266.1| - 5.6e-13 48.8 0.0 7.7e-13 48.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|257388493|ref|YP_003178266.1| - 8.8e-07 28.9 0.0 1.1e-06 28.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|257388493|ref|YP_003178266.1| - 4.2e-06 26.9 0.0 5.4e-06 26.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|257388493|ref|YP_003178266.1| - 2.3e-05 24.0 0.0 6.2e-05 22.6 0.0 1.7 2 0 0 2 2 2 1 FR47-like protein Acetyltransf_9 PF13527.1 gi|257388493|ref|YP_003178266.1| - 8.1e-05 22.4 0.1 0.00019 21.2 0.1 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|257388493|ref|YP_003178266.1| - 0.00039 20.3 0.0 0.00063 19.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Fe-S_biosyn PF01521.15 gi|257388494|ref|YP_003178267.1| - 1.1e-17 64.0 0.0 1.2e-17 63.8 0.0 1.0 1 0 0 1 1 1 1 Iron-sulphur cluster biosynthesis Dodecin PF07311.7 gi|257388495|ref|YP_003178268.1| - 3.1e-24 84.7 0.5 3.3e-24 84.6 0.4 1.0 1 0 0 1 1 1 1 Dodecin DUF4234 PF14018.1 gi|257388496|ref|YP_003178269.1| - 0.0011 18.6 3.2 0.015 15.0 0.6 2.6 2 1 0 2 2 2 2 Domain of unknown function (DUF4234) DUF2238 PF09997.4 gi|257388496|ref|YP_003178269.1| - 0.0034 16.7 2.4 0.0063 15.9 1.7 1.5 1 1 0 1 1 1 1 Predicted membrane protein (DUF2238) Sterol_MT_C PF08498.5 gi|257388497|ref|YP_003178270.1| - 0.029 14.2 0.0 0.073 13.0 0.0 1.6 1 0 0 1 1 1 0 Sterol methyltransferase C-terminal DUF457 PF04307.9 gi|257388498|ref|YP_003178271.1| - 2.7e-12 46.2 22.5 2.7e-12 46.2 15.6 2.3 1 1 1 2 2 2 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) DUF2232 PF09991.4 gi|257388498|ref|YP_003178271.1| - 2.5 7.0 13.5 0.16 10.9 3.0 2.4 2 0 0 2 2 2 0 Predicted membrane protein (DUF2232) PsbQ PF05757.6 gi|257388498|ref|YP_003178271.1| - 2.8 7.3 4.9 1.3 8.4 0.1 2.5 2 0 0 2 2 2 0 Oxygen evolving enhancer protein 3 (PsbQ) A2L_zn_ribbon PF08792.5 gi|257388500|ref|YP_003178273.1| - 0.086 12.3 1.3 4.7 6.8 0.1 2.3 2 0 0 2 2 2 0 A2L zinc ribbon domain DUF294 PF03445.8 gi|257388500|ref|YP_003178273.1| - 0.088 12.4 0.0 0.1 12.2 0.0 1.1 1 0 0 1 1 1 0 Putative nucleotidyltransferase DUF294 DNA_RNApol_7kD PF03604.8 gi|257388500|ref|YP_003178273.1| - 0.17 11.3 1.4 0.26 10.8 1.0 1.3 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Prim_Zn_Ribbon PF08273.7 gi|257388500|ref|YP_003178273.1| - 0.76 9.9 5.8 0.29 11.2 0.7 2.1 1 1 1 2 2 2 0 Zinc-binding domain of primase-helicase Usp PF00582.21 gi|257388501|ref|YP_003178274.1| - 1.1e-08 35.3 0.9 5.8e-08 33.0 0.6 1.9 1 1 0 1 1 1 1 Universal stress protein family MCPsignal PF00015.16 gi|257388502|ref|YP_003178275.1| - 3.4e-50 170.5 56.0 3.5e-46 157.4 23.2 3.4 1 1 1 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.20 gi|257388502|ref|YP_003178275.1| - 1.3e-08 34.8 0.1 1.3e-08 34.8 0.1 7.4 6 4 2 8 8 7 1 HAMP domain Spc7 PF08317.6 gi|257388502|ref|YP_003178275.1| - 5.3e-05 22.0 23.2 0.0016 17.1 4.0 3.2 2 1 2 4 4 4 2 Spc7 kinetochore protein AAA_13 PF13166.1 gi|257388502|ref|YP_003178275.1| - 7.1e-05 21.4 24.3 0.0022 16.5 7.2 2.4 1 1 1 2 2 2 2 AAA domain Syntaxin-6_N PF09177.6 gi|257388502|ref|YP_003178275.1| - 0.00054 20.3 28.8 0.069 13.5 1.0 5.5 2 2 5 7 7 7 2 Syntaxin 6, N-terminal DASH_Dad3 PF08656.5 gi|257388502|ref|YP_003178275.1| - 0.00099 18.7 8.1 0.17 11.5 0.0 5.4 4 1 1 5 5 5 1 DASH complex subunit Dad3 Laminin_II PF06009.7 gi|257388502|ref|YP_003178275.1| - 0.0051 16.5 36.1 0.28 10.9 2.1 5.3 3 2 1 5 5 5 2 Laminin Domain II CorA PF01544.13 gi|257388502|ref|YP_003178275.1| - 0.006 15.6 18.6 0.072 12.1 0.1 3.9 3 1 1 4 4 4 1 CorA-like Mg2+ transporter protein DUF489 PF04356.7 gi|257388502|ref|YP_003178275.1| - 0.0062 16.1 5.1 2.6 7.6 0.0 3.6 2 2 0 3 3 3 1 Protein of unknown function (DUF489) DUF4200 PF13863.1 gi|257388502|ref|YP_003178275.1| - 0.007 16.3 18.3 0.078 12.9 3.3 3.9 3 1 0 3 3 3 1 Domain of unknown function (DUF4200) ISG65-75 PF11727.3 gi|257388502|ref|YP_003178275.1| - 0.0083 15.2 6.3 0.0083 15.2 4.4 4.0 1 1 3 5 5 5 1 Invariant surface glycoprotein APG6 PF04111.7 gi|257388502|ref|YP_003178275.1| - 0.012 14.7 21.7 0.059 12.4 1.9 3.3 3 0 0 3 3 3 0 Autophagy protein Apg6 COG2 PF06148.6 gi|257388502|ref|YP_003178275.1| - 0.014 15.3 27.2 0.93 9.3 0.3 5.4 2 2 4 6 6 6 0 COG (conserved oligomeric Golgi) complex component, COG2 IncA PF04156.9 gi|257388502|ref|YP_003178275.1| - 0.027 14.0 34.3 0.85 9.1 3.4 4.9 1 1 3 4 4 4 0 IncA protein Syntaxin_2 PF14523.1 gi|257388502|ref|YP_003178275.1| - 0.028 14.4 6.9 8.9 6.4 0.1 5.1 3 2 2 5 5 4 0 Syntaxin-like protein TMCO5 PF14992.1 gi|257388502|ref|YP_003178275.1| - 0.055 12.6 30.3 0.032 13.3 3.7 3.2 1 1 1 3 3 3 0 TMCO5 family GAS PF13851.1 gi|257388502|ref|YP_003178275.1| - 0.058 12.5 17.8 0.037 13.2 2.4 3.4 2 1 1 3 3 3 0 Growth-arrest specific micro-tubule binding ATG16 PF08614.6 gi|257388502|ref|YP_003178275.1| - 0.079 12.7 25.4 0.03 14.1 1.8 3.5 1 1 1 3 3 3 0 Autophagy protein 16 (ATG16) DUF1664 PF07889.7 gi|257388502|ref|YP_003178275.1| - 0.095 12.5 30.3 3.5 7.4 0.2 5.3 1 1 4 5 5 5 0 Protein of unknown function (DUF1664) V_ATPase_I PF01496.14 gi|257388502|ref|YP_003178275.1| - 0.14 10.0 20.0 0.038 11.8 9.7 2.2 1 1 0 2 2 2 0 V-type ATPase 116kDa subunit family FH2 PF02181.18 gi|257388502|ref|YP_003178275.1| - 0.15 10.9 16.2 0.075 11.8 3.0 3.5 3 1 1 4 4 4 0 Formin Homology 2 Domain NPV_P10 PF05531.7 gi|257388502|ref|YP_003178275.1| - 0.15 12.3 30.4 0.12 12.6 0.7 6.4 4 2 0 4 4 3 0 Nucleopolyhedrovirus P10 protein Syntaxin PF00804.20 gi|257388502|ref|YP_003178275.1| - 0.17 12.1 28.2 3.5 7.8 2.1 5.5 1 1 3 4 4 4 0 Syntaxin Fzo_mitofusin PF04799.8 gi|257388502|ref|YP_003178275.1| - 0.18 11.1 9.5 0.33 10.3 0.5 4.1 3 1 1 4 4 4 0 fzo-like conserved region APG17 PF04108.7 gi|257388502|ref|YP_003178275.1| - 0.22 10.2 24.3 0.32 9.7 8.3 2.8 1 1 1 2 2 2 0 Autophagy protein Apg17 LXG PF04740.7 gi|257388502|ref|YP_003178275.1| - 0.3 10.8 27.1 0.98 9.1 2.7 5.0 2 2 1 5 5 5 0 LXG domain of WXG superfamily Cauli_AT PF03233.8 gi|257388502|ref|YP_003178275.1| - 0.67 9.6 12.1 1.3 8.6 0.1 4.3 3 2 2 5 5 5 0 Aphid transmission protein TPR_MLP1_2 PF07926.7 gi|257388502|ref|YP_003178275.1| - 0.68 9.6 30.1 0.47 10.1 5.0 3.8 3 2 0 3 3 3 0 TPR/MLP1/MLP2-like protein CK2S PF15011.1 gi|257388502|ref|YP_003178275.1| - 0.69 9.6 14.7 2.1 8.0 0.2 4.6 3 2 1 4 4 4 0 Casein Kinase 2 substrate Allexi_40kDa PF05549.6 gi|257388502|ref|YP_003178275.1| - 0.93 8.7 15.6 0.53 9.5 0.6 3.9 2 1 1 4 4 4 0 Allexivirus 40kDa protein DUF948 PF06103.6 gi|257388502|ref|YP_003178275.1| - 0.94 9.3 41.3 0.46 10.3 0.9 6.5 4 3 3 8 8 6 0 Bacterial protein of unknown function (DUF948) Osmo_CC PF08946.5 gi|257388502|ref|YP_003178275.1| - 1.1 9.2 6.4 12 6.0 1.5 3.2 2 0 0 2 2 2 0 Osmosensory transporter coiled coil AAA_27 PF13514.1 gi|257388502|ref|YP_003178275.1| - 2.1 5.9 50.4 0.36 8.4 25.5 2.1 1 1 1 2 2 2 0 AAA domain CR6_interact PF10147.4 gi|257388502|ref|YP_003178275.1| - 2.2 7.5 20.4 0.065 12.5 2.7 3.8 3 2 1 4 4 4 0 Growth arrest and DNA-damage-inducible proteins-interacting protein 1 BLOC1_2 PF10046.4 gi|257388502|ref|YP_003178275.1| - 2.6 8.2 25.6 4 7.6 1.2 5.7 3 2 3 6 6 6 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 ArsR PF09824.4 gi|257388502|ref|YP_003178275.1| - 2.8 7.2 9.3 2.9 7.1 0.1 3.9 3 1 1 4 4 4 0 ArsR transcriptional regulator MRF_C1 PF13887.1 gi|257388502|ref|YP_003178275.1| - 2.8 7.0 6.5 21 4.2 0.1 4.2 3 1 1 4 4 4 0 Myelin gene regulatory factor -C-terminal domain 1 Vps51 PF08700.6 gi|257388502|ref|YP_003178275.1| - 3.3 7.6 13.5 14 5.6 0.0 5.9 5 2 1 6 6 6 0 Vps51/Vps67 Seryl_tRNA_N PF02403.17 gi|257388502|ref|YP_003178275.1| - 3.6 7.6 26.9 8.9 6.3 0.2 5.6 2 2 2 5 5 5 0 Seryl-tRNA synthetase N-terminal domain DUF148 PF02520.12 gi|257388502|ref|YP_003178275.1| - 3.7 7.3 18.6 1.3 8.8 3.7 4.5 3 2 0 3 3 3 0 Domain of unknown function DUF148 Fib_alpha PF08702.5 gi|257388502|ref|YP_003178275.1| - 4 7.5 18.7 4.2 7.4 1.3 4.9 2 2 5 7 7 7 0 Fibrinogen alpha/beta chain family Reo_sigmaC PF04582.7 gi|257388502|ref|YP_003178275.1| - 6 5.9 30.9 5.7 6.0 0.0 4.4 1 1 4 5 5 5 0 Reovirus sigma C capsid protein ING PF12998.2 gi|257388502|ref|YP_003178275.1| - 8.8 6.6 15.6 17 5.7 1.1 4.6 4 2 0 4 4 3 0 Inhibitor of growth proteins N-terminal histone-binding DUF972 PF06156.8 gi|257388502|ref|YP_003178275.1| - 9.2 6.6 23.1 14 6.0 0.7 5.3 1 1 3 5 5 5 0 Protein of unknown function (DUF972) T4SS PF07996.6 gi|257388502|ref|YP_003178275.1| - 9.8 5.9 24.8 0.8 9.5 0.4 4.6 2 2 0 3 3 3 0 Type IV secretion system proteins Pyridox_ox_2 PF12900.2 gi|257388503|ref|YP_003178276.1| - 4.8e-18 65.3 0.0 5.9e-18 65.0 0.0 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Pyridox_oxidase PF01243.15 gi|257388503|ref|YP_003178276.1| - 1.9e-06 27.7 0.0 2.4e-06 27.4 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase DoxX PF07681.7 gi|257388504|ref|YP_003178277.1| - 9.4e-11 41.9 7.1 9.4e-11 41.9 4.9 1.6 1 1 0 1 1 1 1 DoxX DoxD PF04173.8 gi|257388504|ref|YP_003178277.1| - 2.6e-06 27.2 5.8 0.00031 20.4 1.4 2.1 2 0 0 2 2 2 2 TQO small subunit DoxD DUF3262 PF11660.3 gi|257388505|ref|YP_003178278.1| - 0.12 12.4 1.0 0.15 12.1 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3262) ParA PF10609.4 gi|257388506|ref|YP_003178279.1| - 4e-27 93.9 0.4 7.6e-27 93.0 0.3 1.5 1 0 0 1 1 1 1 ParA/MinD ATPase like CbiA PF01656.18 gi|257388506|ref|YP_003178279.1| - 1.9e-21 76.3 0.1 3.7e-21 75.4 0.0 1.4 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain DUF2249 PF10006.4 gi|257388506|ref|YP_003178279.1| - 1.9e-16 59.3 0.5 4.5e-16 58.1 0.4 1.7 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) DUF59 PF01883.14 gi|257388506|ref|YP_003178279.1| - 3.8e-07 30.0 6.2 5.1e-07 29.5 3.3 2.1 2 0 0 2 2 2 1 Domain of unknown function DUF59 AAA_31 PF13614.1 gi|257388506|ref|YP_003178279.1| - 9.7e-06 25.5 0.1 4.9e-05 23.3 0.0 2.0 2 0 0 2 2 2 1 AAA domain MipZ PF09140.6 gi|257388506|ref|YP_003178279.1| - 5.8e-05 22.2 0.1 0.00012 21.2 0.0 1.6 1 1 0 1 1 1 1 ATPase MipZ VirC1 PF07015.6 gi|257388506|ref|YP_003178279.1| - 0.0011 18.1 0.4 0.0018 17.3 0.0 1.5 2 0 0 2 2 2 1 VirC1 protein AAA_26 PF13500.1 gi|257388506|ref|YP_003178279.1| - 0.0025 17.4 0.0 0.065 12.8 0.0 2.3 2 0 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.10 gi|257388506|ref|YP_003178279.1| - 0.041 12.9 0.9 0.35 9.8 0.1 2.4 2 1 1 3 3 3 0 Anion-transporting ATPase AAA_25 PF13481.1 gi|257388506|ref|YP_003178279.1| - 0.08 12.3 4.4 0.18 11.1 0.2 3.0 2 1 0 3 3 3 0 AAA domain HEAT_2 PF13646.1 gi|257388507|ref|YP_003178280.1| - 4.8e-27 94.0 25.4 3.9e-13 49.4 2.9 3.2 1 1 2 3 3 3 3 HEAT repeats HEAT PF02985.17 gi|257388507|ref|YP_003178280.1| - 3.6e-12 45.2 16.0 0.025 14.6 0.0 6.1 6 0 0 6 6 6 4 HEAT repeat HEAT_EZ PF13513.1 gi|257388507|ref|YP_003178280.1| - 6.1e-09 36.1 20.7 0.058 13.9 0.5 6.1 5 1 1 6 6 6 4 HEAT-like repeat Adaptin_N PF01602.15 gi|257388507|ref|YP_003178280.1| - 0.0015 16.9 0.0 0.0066 14.8 0.0 2.0 1 1 0 1 1 1 1 Adaptin N terminal region Vac14_Fab1_bd PF12755.2 gi|257388507|ref|YP_003178280.1| - 0.034 14.5 0.1 5.5 7.4 0.0 3.5 1 1 3 4 4 4 0 Vacuolar 14 Fab1-binding region Cnd1 PF12717.2 gi|257388507|ref|YP_003178280.1| - 0.069 12.9 0.1 33 4.2 0.0 3.5 2 1 2 4 4 4 0 non-SMC mitotic condensation complex subunit 1 ALF PF03752.8 gi|257388507|ref|YP_003178280.1| - 0.075 12.9 0.1 0.075 12.9 0.1 4.1 3 1 1 4 4 4 0 Short repeats of unknown function HEAT_PBS PF03130.11 gi|257388507|ref|YP_003178280.1| - 0.48 11.0 10.7 4.6 8.0 0.1 5.2 5 0 0 5 5 5 0 PBS lyase HEAT-like repeat DUF711 PF05167.7 gi|257388508|ref|YP_003178281.1| - 0.021 13.5 1.1 0.03 13.0 0.7 1.2 1 0 0 1 1 1 0 Uncharacterised ACR (DUF711) Nitrate_red_del PF02613.10 gi|257388509|ref|YP_003178282.1| - 7.5e-08 32.2 5.2 1.3e-06 28.2 3.6 2.3 1 1 0 1 1 1 1 Nitrate reductase delta subunit EB_dh PF09459.5 gi|257388510|ref|YP_003178283.1| - 1.1e-27 97.0 6.1 4.6e-26 91.8 4.3 2.3 1 1 0 1 1 1 1 Ethylbenzene dehydrogenase Transposase_20 PF02371.11 gi|257388510|ref|YP_003178283.1| - 0.082 13.0 0.7 0.18 11.9 0.2 1.7 2 0 0 2 2 2 0 Transposase IS116/IS110/IS902 family Fer4_11 PF13247.1 gi|257388511|ref|YP_003178284.1| - 1.8e-34 117.5 5.8 1.8e-34 117.5 4.0 2.2 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|257388511|ref|YP_003178284.1| - 1.5e-19 70.0 5.3 4.7e-08 33.2 0.0 3.2 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|257388511|ref|YP_003178284.1| - 5.7e-12 45.2 18.5 2.1e-05 24.2 4.7 3.4 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|257388511|ref|YP_003178284.1| - 7.4e-10 38.9 16.4 0.0079 16.4 0.2 3.4 3 0 0 3 3 3 3 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|257388511|ref|YP_003178284.1| - 1.2e-05 24.9 30.8 7.7e-05 22.3 2.1 5.0 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_17 PF13534.1 gi|257388511|ref|YP_003178284.1| - 0.00033 20.9 17.3 0.037 14.3 0.0 4.3 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|257388511|ref|YP_003178284.1| - 0.00076 19.2 27.2 0.056 13.3 0.7 5.0 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_3 PF12798.2 gi|257388511|ref|YP_003178284.1| - 0.00083 19.7 34.4 0.035 14.6 4.0 4.3 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4 PF00037.22 gi|257388511|ref|YP_003178284.1| - 0.00088 18.7 29.4 0.011 15.2 1.8 5.6 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_15 PF13459.1 gi|257388511|ref|YP_003178284.1| - 0.002 18.6 14.8 0.27 11.8 0.0 4.1 3 1 0 3 3 3 2 4Fe-4S single cluster domain Fer4_8 PF13183.1 gi|257388511|ref|YP_003178284.1| - 0.005 16.8 17.2 0.036 14.1 5.2 3.8 2 1 2 4 4 4 1 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|257388511|ref|YP_003178284.1| - 0.0088 16.4 0.1 0.0088 16.4 0.1 3.8 3 1 0 3 3 3 1 4Fe-4S single cluster domain Fer4_21 PF14697.1 gi|257388511|ref|YP_003178284.1| - 0.014 15.2 1.9 0.014 15.2 1.3 3.1 4 0 0 4 4 3 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|257388511|ref|YP_003178284.1| - 0.044 14.1 1.7 0.044 14.1 1.2 4.6 5 0 0 5 5 5 0 4Fe-4S binding domain Fer4_16 PF13484.1 gi|257388511|ref|YP_003178284.1| - 0.067 13.9 17.1 5.7 7.7 0.1 4.3 3 1 0 3 3 3 0 4Fe-4S double cluster binding domain Fer4_18 PF13746.1 gi|257388511|ref|YP_003178284.1| - 0.11 12.9 0.7 0.11 12.9 0.5 3.6 3 1 1 4 4 3 0 4Fe-4S dicluster domain Molybdopterin PF00384.17 gi|257388512|ref|YP_003178285.1| - 6.2e-89 298.7 0.0 1.3e-88 297.6 0.0 1.5 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|257388512|ref|YP_003178285.1| - 5.7e-22 77.6 0.0 1.2e-21 76.5 0.0 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.11 gi|257388512|ref|YP_003178285.1| - 0.0065 16.2 0.4 0.013 15.2 0.3 1.5 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain TAT_signal PF10518.4 gi|257388512|ref|YP_003178285.1| - 0.045 13.7 2.0 0.094 12.7 1.4 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Cytochrom_B_N_2 PF13631.1 gi|257388514|ref|YP_003178287.1| - 2.3e-44 151.1 0.8 2.3e-44 151.1 0.6 2.8 4 0 0 4 4 4 1 Cytochrome b(N-terminal)/b6/petB Cytochrom_B_N PF00033.14 gi|257388514|ref|YP_003178287.1| - 4.6e-10 39.1 14.1 4.6e-10 39.1 9.8 2.4 2 1 1 3 3 3 1 Cytochrome b(N-terminal)/b6/petB Cytochrom_B_C PF00032.12 gi|257388514|ref|YP_003178287.1| - 1.9e-05 24.8 1.0 1.9e-05 24.8 0.7 2.5 2 0 0 2 2 2 1 Cytochrome b(C-terminal)/b6/petD DUF4405 PF14358.1 gi|257388514|ref|YP_003178287.1| - 0.18 11.9 15.7 8.4 6.6 8.9 4.0 2 1 0 2 2 2 0 Domain of unknown function (DUF4405) Rieske PF00355.21 gi|257388515|ref|YP_003178288.1| - 2.4e-12 46.2 0.1 6e-12 44.9 0.0 1.7 2 0 0 2 2 2 1 Rieske [2Fe-2S] domain TAT_signal PF10518.4 gi|257388515|ref|YP_003178288.1| - 0.051 13.6 2.1 0.051 13.6 1.4 2.1 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence ABC2_membrane_4 PF12730.2 gi|257388516|ref|YP_003178289.1| - 0.0086 15.2 0.9 2.9 6.9 0.4 2.2 2 0 0 2 2 2 2 ABC-2 family transporter protein DUF4131 PF13567.1 gi|257388516|ref|YP_003178289.1| - 0.26 10.7 1.9 8.1 5.8 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) OppC_N PF12911.2 gi|257388516|ref|YP_003178289.1| - 0.36 10.2 4.2 4.9 6.6 0.8 2.6 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C MS_channel PF00924.13 gi|257388517|ref|YP_003178290.1| - 1.1e-38 132.6 0.0 1.5e-38 132.2 0.0 1.1 1 0 0 1 1 1 1 Mechanosensitive ion channel PhnA_Zn_Ribbon PF08274.7 gi|257388518|ref|YP_003178291.1| - 0.003 17.3 0.4 2.5 7.9 0.0 2.2 2 0 0 2 2 2 2 PhnA Zinc-Ribbon A2L_zn_ribbon PF08792.5 gi|257388518|ref|YP_003178291.1| - 0.0033 16.8 0.6 2.1 7.8 0.0 2.6 3 0 0 3 3 3 2 A2L zinc ribbon domain Zn-ribbon_8 PF09723.5 gi|257388518|ref|YP_003178291.1| - 0.0034 17.3 1.2 0.13 12.2 0.1 2.3 2 0 0 2 2 2 1 Zinc ribbon domain OrfB_Zn_ribbon PF07282.6 gi|257388518|ref|YP_003178291.1| - 0.0038 16.8 0.9 0.25 11.0 0.0 2.1 1 1 1 2 2 2 1 Putative transposase DNA-binding domain DZR PF12773.2 gi|257388518|ref|YP_003178291.1| - 0.0078 16.0 1.8 0.02 14.7 1.3 1.8 1 1 0 1 1 1 1 Double zinc ribbon zf-RING_3 PF14369.1 gi|257388518|ref|YP_003178291.1| - 0.011 15.7 2.8 0.24 11.4 0.1 2.2 2 0 0 2 2 2 0 zinc-finger zf-NADH-PPase PF09297.6 gi|257388518|ref|YP_003178291.1| - 0.013 14.9 2.1 0.21 11.1 0.0 2.4 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain UPF0547 PF10571.4 gi|257388518|ref|YP_003178291.1| - 0.015 14.9 3.3 0.084 12.5 0.3 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-RING_4 PF14570.1 gi|257388518|ref|YP_003178291.1| - 0.59 9.7 3.1 2.4 7.8 2.1 1.9 1 1 0 1 1 1 0 RING/Ubox like zinc-binding domain Zn_Tnp_IS1 PF03811.8 gi|257388518|ref|YP_003178291.1| - 3.4 7.2 4.8 18 4.9 0.1 2.8 3 0 0 3 3 3 0 InsA N-terminal domain zf-ribbon_3 PF13248.1 gi|257388518|ref|YP_003178291.1| - 4.3 6.6 5.5 39 3.6 4.1 2.1 1 1 1 2 2 2 0 zinc-ribbon domain IF-2B PF01008.12 gi|257388519|ref|YP_003178292.1| - 2.1e-36 125.3 0.4 2.5e-36 125.1 0.3 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family THDPS_N_2 PF14805.1 gi|257388519|ref|YP_003178292.1| - 0.022 14.6 2.1 0.047 13.5 0.9 2.0 1 1 1 2 2 2 0 Tetrahydrodipicolinate N-succinyltransferase N-terminal HEAT_2 PF13646.1 gi|257388519|ref|YP_003178292.1| - 0.15 12.3 2.2 0.3 11.3 0.2 2.1 2 1 0 2 2 2 0 HEAT repeats DUF1628 PF07790.6 gi|257388520|ref|YP_003178293.1| - 4.8e-07 30.4 1.7 6e-07 30.1 0.5 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF1628) DoxX PF07681.7 gi|257388521|ref|YP_003178294.1| - 1.5e-07 31.7 9.1 1.5e-07 31.7 6.3 3.6 2 1 0 2 2 2 1 DoxX TrbC PF04956.8 gi|257388521|ref|YP_003178294.1| - 2.7 8.0 14.2 4.9 7.2 0.6 4.1 4 1 0 4 4 4 0 TrbC/VIRB2 family DoxD PF04173.8 gi|257388521|ref|YP_003178294.1| - 6.9 6.3 12.8 0.1 12.2 1.4 3.1 3 2 0 3 3 3 0 TQO small subunit DoxD Acetyltransf_7 PF13508.1 gi|257388522|ref|YP_003178295.1| - 5.3e-14 52.1 0.4 1e-13 51.2 0.2 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|257388522|ref|YP_003178295.1| - 2.2e-13 50.0 0.4 5.3e-13 48.8 0.2 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family FR47 PF08445.5 gi|257388522|ref|YP_003178295.1| - 1.2e-10 41.0 0.0 2.3e-10 40.0 0.0 1.5 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_10 PF13673.1 gi|257388522|ref|YP_003178295.1| - 5.3e-08 33.0 0.1 7.2e-08 32.5 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|257388522|ref|YP_003178295.1| - 9.6e-07 28.7 0.3 2.1e-06 27.6 0.2 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|257388522|ref|YP_003178295.1| - 0.00014 21.6 0.1 0.00037 20.3 0.1 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|257388522|ref|YP_003178295.1| - 0.00028 20.8 0.1 0.00068 19.6 0.1 1.6 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|257388522|ref|YP_003178295.1| - 0.032 14.3 0.0 0.051 13.7 0.0 1.4 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|257388522|ref|YP_003178295.1| - 0.078 12.8 0.0 0.12 12.2 0.0 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase NTS_2 PF15448.1 gi|257388522|ref|YP_003178295.1| - 0.17 12.1 2.3 0.46 10.8 1.6 1.7 1 0 0 1 1 1 0 N-terminal segments of P. falciparum erythrocyte membrane protein Transport_MerF PF11431.3 gi|257388523|ref|YP_003178296.1| - 0.02 14.5 2.3 0.11 12.1 0.6 2.3 2 0 0 2 2 2 0 Membrane transport protein MerF DUF4131 PF13567.1 gi|257388523|ref|YP_003178296.1| - 0.096 12.0 2.7 0.26 10.6 0.2 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) DNA_primase_S PF01896.14 gi|257388524|ref|YP_003178297.1| - 1.3e-22 80.2 0.0 2.2e-22 79.4 0.0 1.3 1 0 0 1 1 1 1 Eukaryotic and archaeal DNA primase small subunit Metal_resist PF13801.1 gi|257388525|ref|YP_003178298.1| - 0.0052 16.7 2.6 0.0095 15.9 1.5 1.7 1 1 0 1 1 1 1 Heavy-metal resistance DUF605 PF04652.11 gi|257388525|ref|YP_003178298.1| - 1.3 8.3 11.0 1.4 8.2 7.6 1.2 1 0 0 1 1 1 0 Vta1 like Trypsin_2 PF13365.1 gi|257388526|ref|YP_003178299.1| - 2.2e-17 63.1 1.2 4e-17 62.3 0.8 1.4 1 0 0 1 1 1 1 Trypsin-like peptidase domain PDZ_2 PF13180.1 gi|257388526|ref|YP_003178299.1| - 1.9e-12 46.8 0.2 4e-12 45.8 0.1 1.6 1 0 0 1 1 1 1 PDZ domain Trypsin PF00089.21 gi|257388526|ref|YP_003178299.1| - 1.7e-11 44.1 0.2 3.9e-11 42.9 0.1 1.5 1 1 0 1 1 1 1 Trypsin Pico_P2A PF00947.14 gi|257388526|ref|YP_003178299.1| - 0.021 14.6 0.4 0.059 13.1 0.3 1.7 1 0 0 1 1 1 0 Picornavirus core protein 2A PDZ PF00595.19 gi|257388526|ref|YP_003178299.1| - 0.083 13.0 0.0 12 6.1 0.0 2.8 3 0 0 3 3 3 0 PDZ domain (Also known as DHR or GLGF) DUF3487 PF11990.3 gi|257388527|ref|YP_003178300.1| - 0.045 13.1 1.4 0.049 13.0 1.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3487) DUF2678 PF10856.3 gi|257388527|ref|YP_003178300.1| - 0.091 12.5 1.6 0.11 12.2 1.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2678) DUF3329 PF11808.3 gi|257388527|ref|YP_003178300.1| - 0.11 12.5 1.5 0.17 11.9 1.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3329) Peptidase_M50B PF13398.1 gi|257388527|ref|YP_003178300.1| - 0.17 11.2 3.8 0.19 11.0 2.6 1.1 1 0 0 1 1 1 0 Peptidase M50B-like GspL_C PF12693.2 gi|257388527|ref|YP_003178300.1| - 0.45 10.2 1.9 0.53 10.0 1.3 1.2 1 0 0 1 1 1 0 GspL periplasmic domain Methyltransf_26 PF13659.1 gi|257388528|ref|YP_003178301.1| - 1.3e-15 57.4 0.1 1.9e-15 56.9 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|257388528|ref|YP_003178301.1| - 4e-13 49.3 0.0 5.3e-13 48.9 0.0 1.1 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 MTS PF05175.9 gi|257388528|ref|YP_003178301.1| - 1.2e-10 41.0 0.0 1.7e-10 40.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_18 PF12847.2 gi|257388528|ref|YP_003178301.1| - 1.3e-09 38.5 0.0 2.3e-09 37.8 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain PrmA PF06325.8 gi|257388528|ref|YP_003178301.1| - 4.9e-08 32.4 0.0 6.8e-08 31.9 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_31 PF13847.1 gi|257388528|ref|YP_003178301.1| - 4.6e-07 29.5 0.0 6.1e-07 29.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|257388528|ref|YP_003178301.1| - 8e-07 29.4 0.1 2.7e-06 27.7 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|257388528|ref|YP_003178301.1| - 1.7e-06 28.3 0.0 2.6e-06 27.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.10 gi|257388528|ref|YP_003178301.1| - 8.3e-06 25.3 0.0 1.2e-05 24.8 0.0 1.1 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_32 PF13679.1 gi|257388528|ref|YP_003178301.1| - 0.00036 20.2 0.0 0.00045 19.9 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|257388528|ref|YP_003178301.1| - 0.0018 17.9 0.0 0.0022 17.7 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|257388528|ref|YP_003178301.1| - 0.0019 17.3 0.0 0.0029 16.7 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.7 gi|257388528|ref|YP_003178301.1| - 0.0024 18.3 0.0 0.0039 17.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.5 gi|257388528|ref|YP_003178301.1| - 0.0057 16.2 0.0 0.0074 15.8 0.0 1.1 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase RrnaAD PF00398.15 gi|257388528|ref|YP_003178301.1| - 0.012 14.6 0.0 0.013 14.5 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase N6_Mtase PF02384.11 gi|257388528|ref|YP_003178301.1| - 0.022 13.8 0.0 0.061 12.3 0.0 1.6 1 1 0 1 1 1 0 N-6 DNA Methylase Methyltransf_9 PF08003.6 gi|257388528|ref|YP_003178301.1| - 0.023 13.4 0.0 0.032 12.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) FtsJ PF01728.14 gi|257388528|ref|YP_003178301.1| - 0.066 13.2 0.0 0.079 12.9 0.0 1.2 1 0 0 1 1 1 0 FtsJ-like methyltransferase Rhomboid PF01694.17 gi|257388529|ref|YP_003178302.1| - 1.4e-09 38.0 11.5 1.4e-09 38.0 8.0 2.3 2 0 0 2 2 2 1 Rhomboid family HxlR PF01638.12 gi|257388530|ref|YP_003178303.1| - 8.7e-24 82.9 0.0 1e-23 82.7 0.0 1.0 1 0 0 1 1 1 1 HxlR-like helix-turn-helix MarR_2 PF12802.2 gi|257388530|ref|YP_003178303.1| - 8e-05 22.2 0.2 0.00012 21.6 0.1 1.2 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.1 gi|257388530|ref|YP_003178303.1| - 0.00015 21.7 0.0 0.0002 21.2 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain Trp_repressor PF01371.14 gi|257388530|ref|YP_003178303.1| - 0.00057 19.7 0.0 0.00082 19.2 0.0 1.2 1 0 0 1 1 1 1 Trp repressor protein HTH_27 PF13463.1 gi|257388530|ref|YP_003178303.1| - 0.00081 19.6 0.2 0.0011 19.1 0.1 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain PadR PF03551.9 gi|257388530|ref|YP_003178303.1| - 0.0018 17.9 0.1 0.0026 17.4 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_20 PF12840.2 gi|257388530|ref|YP_003178303.1| - 0.0031 17.2 0.0 0.0058 16.4 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|257388530|ref|YP_003178303.1| - 0.0053 16.3 0.0 0.008 15.8 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|257388530|ref|YP_003178303.1| - 0.033 13.8 0.0 0.043 13.5 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.1 gi|257388530|ref|YP_003178303.1| - 0.036 13.8 0.0 0.044 13.5 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix TFIIE_alpha PF02002.12 gi|257388530|ref|YP_003178303.1| - 0.036 13.5 0.0 0.044 13.2 0.0 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit MarR PF01047.17 gi|257388530|ref|YP_003178303.1| - 0.045 13.4 0.0 0.062 13.0 0.0 1.2 1 0 0 1 1 1 0 MarR family RepL PF05732.6 gi|257388530|ref|YP_003178303.1| - 0.077 12.2 0.0 0.14 11.3 0.0 1.4 1 1 0 1 1 1 0 Firmicute plasmid replication protein (RepL) DUF1241 PF06840.6 gi|257388530|ref|YP_003178303.1| - 0.081 12.1 0.1 0.18 11.0 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1241) DUF4364 PF14277.1 gi|257388530|ref|YP_003178303.1| - 0.11 12.1 0.0 0.13 11.8 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) Glycos_transf_2 PF00535.21 gi|257388532|ref|YP_003178305.1| - 3.6e-18 65.8 0.0 6.1e-18 65.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|257388532|ref|YP_003178305.1| - 2e-14 53.9 0.1 2.8e-14 53.4 0.1 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|257388532|ref|YP_003178305.1| - 2.2e-07 31.0 0.0 3.7e-07 30.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 NTP_transf_3 PF12804.2 gi|257388532|ref|YP_003178305.1| - 0.00052 20.1 0.0 0.00092 19.3 0.0 1.4 1 0 0 1 1 1 1 MobA-like NTP transferase domain Glyco_transf_21 PF13506.1 gi|257388532|ref|YP_003178305.1| - 0.0017 17.6 0.0 0.0027 17.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 21 NfeD PF01957.13 gi|257388532|ref|YP_003178305.1| - 0.0089 16.1 0.5 0.015 15.4 0.4 1.3 1 0 0 1 1 1 1 NfeD-like C-terminal, partner-binding UPF0060 PF02694.10 gi|257388532|ref|YP_003178305.1| - 0.18 11.8 5.7 0.13 12.2 2.7 1.6 2 0 0 2 2 2 0 Uncharacterised BCR, YnfA/UPF0060 family DUF4191 PF13829.1 gi|257388532|ref|YP_003178305.1| - 0.21 10.7 2.0 0.56 9.2 1.4 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4191) YSIRK_signal PF04650.12 gi|257388532|ref|YP_003178305.1| - 2.8 7.5 5.6 5.5 6.6 3.9 1.5 1 0 0 1 1 1 0 YSIRK type signal peptide HATPase_c PF02518.21 gi|257388533|ref|YP_003178306.1| - 6.1e-24 83.8 0.0 2.5e-23 81.8 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|257388533|ref|YP_003178306.1| - 4e-11 43.2 0.0 9.4e-11 42.0 0.0 1.6 1 0 0 1 1 1 1 PAS domain PAS_4 PF08448.5 gi|257388533|ref|YP_003178306.1| - 6.3e-11 42.2 0.1 1.5e-10 41.0 0.1 1.7 1 0 0 1 1 1 1 PAS fold HATPase_c_2 PF13581.1 gi|257388533|ref|YP_003178306.1| - 4.5e-09 36.1 0.1 2e-08 34.0 0.0 2.1 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain GAF_3 PF13492.1 gi|257388533|ref|YP_003178306.1| - 5.2e-09 36.2 0.0 1e-08 35.3 0.0 1.6 1 0 0 1 1 1 1 GAF domain GAF PF01590.21 gi|257388533|ref|YP_003178306.1| - 5.9e-05 23.2 0.0 0.00016 21.7 0.0 1.7 1 0 0 1 1 1 1 GAF domain HATPase_c_5 PF14501.1 gi|257388533|ref|YP_003178306.1| - 0.00026 20.6 0.0 0.00054 19.6 0.0 1.5 1 0 0 1 1 1 1 GHKL domain PAS PF00989.19 gi|257388533|ref|YP_003178306.1| - 0.00081 19.1 0.0 0.005 16.6 0.0 2.1 2 0 0 2 2 2 1 PAS fold GAF_2 PF13185.1 gi|257388533|ref|YP_003178306.1| - 0.0083 16.6 0.1 0.27 11.7 0.0 2.5 2 0 0 2 2 2 1 GAF domain HisKA PF00512.20 gi|257388533|ref|YP_003178306.1| - 0.4 10.6 2.7 0.8 9.7 0.1 2.7 2 0 0 2 2 2 0 His Kinase A (phospho-acceptor) domain Diphthamide_syn PF01866.12 gi|257388534|ref|YP_003178307.1| - 7.1e-94 314.4 0.0 8.2e-94 314.2 0.0 1.0 1 0 0 1 1 1 1 Putative diphthamide synthesis protein DUF964 PF06133.6 gi|257388536|ref|YP_003178309.1| - 6e-20 71.2 10.4 6.8e-20 71.1 7.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF964) FTA4 PF13093.1 gi|257388536|ref|YP_003178309.1| - 0.064 12.6 3.6 0.079 12.3 2.5 1.1 1 0 0 1 1 1 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 AAA_23 PF13476.1 gi|257388536|ref|YP_003178309.1| - 6.8 6.9 6.3 9.4 6.4 4.4 1.3 1 0 0 1 1 1 0 AAA domain Arch_flagellin PF01917.11 gi|257388537|ref|YP_003178310.1| - 1.3e-33 116.2 10.7 1.5e-33 116.0 7.4 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin Lactamase_B PF00753.22 gi|257388537|ref|YP_003178310.1| - 0.023 14.3 0.0 0.027 14.1 0.0 1.2 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily IncA PF04156.9 gi|257388537|ref|YP_003178310.1| - 0.025 14.1 0.0 0.041 13.4 0.0 1.3 1 1 0 1 1 1 0 IncA protein Lactamase_B_2 PF12706.2 gi|257388538|ref|YP_003178311.1| - 4.1e-18 65.6 1.3 5.3e-18 65.2 0.4 1.5 1 1 1 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|257388538|ref|YP_003178311.1| - 2.6e-14 53.2 0.2 3.4e-14 52.8 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|257388538|ref|YP_003178311.1| - 0.0011 18.6 5.0 0.0038 16.9 0.4 2.3 2 0 0 2 2 2 2 Metallo-beta-lactamase superfamily TBPIP PF07106.8 gi|257388539|ref|YP_003178312.1| - 2.8e-05 23.7 6.0 0.0029 17.1 1.2 2.4 1 1 1 2 2 2 2 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Spc7 PF08317.6 gi|257388539|ref|YP_003178312.1| - 4.5e-05 22.2 4.5 0.00015 20.5 0.4 2.1 1 1 1 2 2 2 1 Spc7 kinetochore protein FlaC_arch PF05377.6 gi|257388539|ref|YP_003178312.1| - 6.3e-05 22.7 10.1 0.019 14.8 0.0 4.6 2 1 2 4 4 4 1 Flagella accessory protein C (FlaC) MCPsignal PF00015.16 gi|257388539|ref|YP_003178312.1| - 7.2e-05 22.4 3.8 0.00013 21.5 2.6 1.5 1 0 0 1 1 1 1 Methyl-accepting chemotaxis protein (MCP) signalling domain AAA_13 PF13166.1 gi|257388539|ref|YP_003178312.1| - 9.7e-05 21.0 5.5 0.00014 20.4 3.8 1.2 1 0 0 1 1 1 1 AAA domain Laminin_II PF06009.7 gi|257388539|ref|YP_003178312.1| - 0.00015 21.5 1.5 0.00015 21.5 1.1 1.8 2 0 0 2 2 1 1 Laminin Domain II Baculo_PEP_C PF04513.7 gi|257388539|ref|YP_003178312.1| - 0.0003 20.6 0.6 0.47 10.2 0.1 2.3 1 1 1 2 2 2 2 Baculovirus polyhedron envelope protein, PEP, C terminus Reo_sigmaC PF04582.7 gi|257388539|ref|YP_003178312.1| - 0.00033 19.9 4.5 0.00043 19.5 0.9 2.0 1 1 1 2 2 2 2 Reovirus sigma C capsid protein THOC7 PF05615.8 gi|257388539|ref|YP_003178312.1| - 0.00039 20.6 2.0 0.0012 19.1 0.6 2.2 1 1 1 2 2 2 1 Tho complex subunit 7 MscS_porin PF12795.2 gi|257388539|ref|YP_003178312.1| - 0.00042 19.7 0.3 0.00042 19.7 0.2 2.4 2 1 1 3 3 2 1 Mechanosensitive ion channel porin domain Filament PF00038.16 gi|257388539|ref|YP_003178312.1| - 0.00042 19.8 6.3 0.00042 19.8 4.4 1.9 1 1 1 2 2 2 1 Intermediate filament protein DUF745 PF05335.8 gi|257388539|ref|YP_003178312.1| - 0.00075 19.0 1.5 0.00075 19.0 1.1 1.7 2 0 0 2 2 1 1 Protein of unknown function (DUF745) IncA PF04156.9 gi|257388539|ref|YP_003178312.1| - 0.0014 18.2 11.8 0.0024 17.4 3.6 2.2 1 1 1 2 2 2 2 IncA protein DUF1664 PF07889.7 gi|257388539|ref|YP_003178312.1| - 0.0016 18.2 7.2 0.037 13.8 1.8 2.6 1 1 1 2 2 2 1 Protein of unknown function (DUF1664) DUF1090 PF06476.7 gi|257388539|ref|YP_003178312.1| - 0.0017 18.0 2.9 0.73 9.5 0.0 2.7 1 1 1 2 2 2 2 Protein of unknown function (DUF1090) APG6 PF04111.7 gi|257388539|ref|YP_003178312.1| - 0.002 17.2 4.6 0.002 17.2 3.2 2.0 1 1 0 1 1 1 1 Autophagy protein Apg6 COG2 PF06148.6 gi|257388539|ref|YP_003178312.1| - 0.0024 17.7 5.6 0.17 11.7 0.5 2.9 1 1 1 2 2 2 1 COG (conserved oligomeric Golgi) complex component, COG2 Nup54 PF13874.1 gi|257388539|ref|YP_003178312.1| - 0.0025 17.5 1.1 0.21 11.2 0.0 3.1 2 1 1 3 3 3 1 Nucleoporin complex subunit 54 EzrA PF06160.7 gi|257388539|ref|YP_003178312.1| - 0.0044 15.2 6.5 0.0092 14.2 4.1 1.7 1 1 1 2 2 2 1 Septation ring formation regulator, EzrA DUF2353 PF09789.4 gi|257388539|ref|YP_003178312.1| - 0.0046 16.2 2.6 0.0046 16.2 1.8 1.6 1 1 1 2 2 2 1 Uncharacterized coiled-coil protein (DUF2353) NPV_P10 PF05531.7 gi|257388539|ref|YP_003178312.1| - 0.0048 17.1 8.9 0.21 11.8 0.9 3.5 1 1 2 3 3 3 1 Nucleopolyhedrovirus P10 protein Dor1 PF04124.7 gi|257388539|ref|YP_003178312.1| - 0.0051 15.3 1.7 0.44 8.9 0.1 2.1 1 1 1 2 2 2 2 Dor1-like family Flagellin_N PF00669.15 gi|257388539|ref|YP_003178312.1| - 0.0057 16.4 6.0 0.082 12.7 0.1 2.8 2 1 1 3 3 2 1 Bacterial flagellin N-terminal helical region ALIX_LYPXL_bnd PF13949.1 gi|257388539|ref|YP_003178312.1| - 0.0057 15.6 8.6 0.031 13.2 5.9 2.3 1 1 0 1 1 1 1 ALIX V-shaped domain binding to HIV Mnd1 PF03962.10 gi|257388539|ref|YP_003178312.1| - 0.0063 16.2 1.9 0.0063 16.2 1.3 2.2 1 1 1 2 2 2 1 Mnd1 family Osmo_CC PF08946.5 gi|257388539|ref|YP_003178312.1| - 0.0064 16.5 4.5 0.0064 16.5 3.1 3.7 4 0 0 4 4 2 1 Osmosensory transporter coiled coil DUF4201 PF13870.1 gi|257388539|ref|YP_003178312.1| - 0.01 15.2 0.1 0.018 14.5 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4201) DUF724 PF05266.9 gi|257388539|ref|YP_003178312.1| - 0.012 15.2 0.2 0.012 15.2 0.1 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF724) WXG100 PF06013.7 gi|257388539|ref|YP_003178312.1| - 0.016 15.2 2.5 0.038 13.9 0.3 2.7 2 1 0 2 2 1 0 Proteins of 100 residues with WXG Prefoldin PF02996.12 gi|257388539|ref|YP_003178312.1| - 0.029 14.0 7.7 0.75 9.4 0.2 3.8 1 1 3 4 4 4 0 Prefoldin subunit FH2 PF02181.18 gi|257388539|ref|YP_003178312.1| - 0.045 12.6 6.0 0.12 11.1 3.0 2.0 1 1 1 2 2 2 0 Formin Homology 2 Domain AbiH PF14253.1 gi|257388539|ref|YP_003178312.1| - 0.046 13.3 1.8 0.084 12.4 1.2 1.4 1 0 0 1 1 1 0 Bacteriophage abortive infection AbiH Cortex-I_coil PF09304.5 gi|257388539|ref|YP_003178312.1| - 0.055 13.5 8.5 0.028 14.4 2.8 2.2 1 1 1 2 2 2 0 Cortexillin I, coiled coil Prominin PF05478.6 gi|257388539|ref|YP_003178312.1| - 0.056 10.9 0.6 0.26 8.7 0.4 1.9 1 1 0 1 1 1 0 Prominin MerR-DNA-bind PF09278.6 gi|257388539|ref|YP_003178312.1| - 0.065 13.6 1.2 0.065 13.6 0.8 2.2 2 0 0 2 2 1 0 MerR, DNA binding AIP3 PF03915.8 gi|257388539|ref|YP_003178312.1| - 0.065 12.1 8.9 0.54 9.1 4.7 2.0 1 1 1 2 2 2 0 Actin interacting protein 3 Spectrin PF00435.16 gi|257388539|ref|YP_003178312.1| - 0.065 13.5 7.2 0.14 12.4 0.9 2.6 1 1 2 3 3 3 0 Spectrin repeat Acetyltransf_11 PF13720.1 gi|257388539|ref|YP_003178312.1| - 0.071 13.3 1.3 0.28 11.4 0.0 2.6 2 1 0 2 2 2 0 Udp N-acetylglucosamine O-acyltransferase; Domain 2 Atg14 PF10186.4 gi|257388539|ref|YP_003178312.1| - 0.077 11.9 0.2 0.31 9.9 0.0 1.8 1 1 1 2 2 2 0 UV radiation resistance protein and autophagy-related subunit 14 Transposase_22 PF02994.9 gi|257388539|ref|YP_003178312.1| - 0.094 11.1 6.9 0.15 10.5 4.8 1.4 1 0 0 1 1 1 0 L1 transposable element Cob_adeno_trans PF01923.13 gi|257388539|ref|YP_003178312.1| - 0.1 12.4 4.8 0.92 9.2 0.8 2.5 1 1 2 3 3 3 0 Cobalamin adenosyltransferase H-kinase_dim PF02895.9 gi|257388539|ref|YP_003178312.1| - 0.1 12.9 6.0 1.6 9.1 1.8 3.2 1 1 1 2 2 2 0 Signal transducing histidine kinase, homodimeric domain LPP PF04728.8 gi|257388539|ref|YP_003178312.1| - 0.12 12.2 7.4 4.1 7.2 1.8 3.7 2 1 1 3 3 3 0 Lipoprotein leucine-zipper ATG16 PF08614.6 gi|257388539|ref|YP_003178312.1| - 0.13 12.0 11.1 0.13 12.0 5.7 2.3 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) Hemerythrin PF01814.18 gi|257388539|ref|YP_003178312.1| - 0.13 12.4 5.7 1.5 9.0 0.2 2.8 1 1 1 2 2 2 0 Hemerythrin HHE cation binding domain DUF948 PF06103.6 gi|257388539|ref|YP_003178312.1| - 0.16 11.8 6.2 0.35 10.7 0.3 3.3 1 1 3 4 4 4 0 Bacterial protein of unknown function (DUF948) DUF3450 PF11932.3 gi|257388539|ref|YP_003178312.1| - 0.18 11.0 4.1 0.93 8.7 0.6 2.3 1 1 2 3 3 3 0 Protein of unknown function (DUF3450) DUF2408 PF10303.4 gi|257388539|ref|YP_003178312.1| - 0.18 11.8 5.4 3 7.9 3.7 2.7 1 1 0 1 1 1 0 Protein of unknown function (DUF2408) Syntaxin PF00804.20 gi|257388539|ref|YP_003178312.1| - 0.18 11.9 10.6 6.6 6.9 5.2 3.2 1 1 2 3 3 3 0 Syntaxin CENP-F_leu_zip PF10473.4 gi|257388539|ref|YP_003178312.1| - 0.18 11.6 11.7 0.46 10.3 6.2 2.5 1 1 1 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Lip_prot_lig_C PF10437.4 gi|257388539|ref|YP_003178312.1| - 0.19 11.4 1.1 2.2 7.9 0.1 2.7 2 1 1 3 3 2 0 Bacterial lipoate protein ligase C-terminus TMF_DNA_bd PF12329.3 gi|257388539|ref|YP_003178312.1| - 0.23 11.2 12.9 0.72 9.6 0.4 4.2 4 1 0 4 4 3 0 TATA element modulatory factor 1 DNA binding GAS PF13851.1 gi|257388539|ref|YP_003178312.1| - 0.24 10.5 2.4 0.37 9.9 0.7 1.8 1 1 0 2 2 2 0 Growth-arrest specific micro-tubule binding Fib_alpha PF08702.5 gi|257388539|ref|YP_003178312.1| - 0.26 11.4 1.1 3 7.9 0.4 2.4 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family Med9 PF07544.8 gi|257388539|ref|YP_003178312.1| - 0.26 11.0 8.1 1.5 8.6 2.2 2.9 1 1 1 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 Mod_r PF07200.8 gi|257388539|ref|YP_003178312.1| - 0.29 11.0 5.6 2.3 8.1 0.3 2.6 1 1 0 2 2 2 0 Modifier of rudimentary (Mod(r)) protein IFT57 PF10498.4 gi|257388539|ref|YP_003178312.1| - 0.29 9.8 13.1 0.54 8.9 9.1 1.5 1 1 0 1 1 1 0 Intra-flagellar transport protein 57 Seryl_tRNA_N PF02403.17 gi|257388539|ref|YP_003178312.1| - 0.38 10.7 10.3 0.11 12.5 0.5 3.2 1 1 2 3 3 3 0 Seryl-tRNA synthetase N-terminal domain BLOC1_2 PF10046.4 gi|257388539|ref|YP_003178312.1| - 0.41 10.8 10.2 0.47 10.6 0.5 3.2 1 1 2 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 AATF-Che1 PF13339.1 gi|257388539|ref|YP_003178312.1| - 0.41 10.7 6.2 5.8 7.0 0.1 2.6 2 1 1 3 3 2 0 Apoptosis antagonizing transcription factor Snapin_Pallidin PF14712.1 gi|257388539|ref|YP_003178312.1| - 0.46 10.8 3.6 5.9 7.2 0.8 3.2 2 2 2 4 4 3 0 Snapin/Pallidin TMF_TATA_bd PF12325.3 gi|257388539|ref|YP_003178312.1| - 0.52 10.0 12.6 0.23 11.1 6.3 2.2 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding DUF3166 PF11365.3 gi|257388539|ref|YP_003178312.1| - 0.57 10.6 6.4 4.5 7.7 0.2 3.3 3 0 0 3 3 3 0 Protein of unknown function (DUF3166) Syntaxin-6_N PF09177.6 gi|257388539|ref|YP_003178312.1| - 0.63 10.4 8.9 9.9 6.6 0.3 2.8 1 1 0 2 2 2 0 Syntaxin 6, N-terminal DUF2968 PF11180.3 gi|257388539|ref|YP_003178312.1| - 0.63 9.3 5.1 4.4 6.6 0.0 2.7 2 1 0 2 2 2 0 Protein of unknown function (DUF2968) Rabaptin PF03528.10 gi|257388539|ref|YP_003178312.1| - 0.65 9.9 9.1 0.28 11.1 2.9 2.5 1 1 1 2 2 2 0 Rabaptin DUF4618 PF15397.1 gi|257388539|ref|YP_003178312.1| - 0.88 8.8 6.1 13 5.0 0.1 3.1 1 1 1 3 3 3 0 Domain of unknown function (DUF4618) ORF6C PF10552.4 gi|257388539|ref|YP_003178312.1| - 0.96 9.2 5.4 3.9 7.2 0.1 3.3 1 1 2 3 3 3 0 ORF6C domain Nsp1_C PF05064.8 gi|257388539|ref|YP_003178312.1| - 1.1 8.9 6.3 6 6.5 4.2 2.4 1 1 0 1 1 1 0 Nsp1-like C-terminal region DUF812 PF05667.6 gi|257388539|ref|YP_003178312.1| - 1.4 7.2 13.2 2.1 6.7 5.5 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF812) TPR_MLP1_2 PF07926.7 gi|257388539|ref|YP_003178312.1| - 1.6 8.4 9.1 35 4.1 5.5 2.7 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein V_ATPase_I PF01496.14 gi|257388539|ref|YP_003178312.1| - 1.7 6.4 6.0 1.5 6.5 2.8 1.4 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family DUF16 PF01519.11 gi|257388539|ref|YP_003178312.1| - 2.2 8.5 6.0 14 5.9 4.2 2.4 1 1 0 1 1 1 0 Protein of unknown function DUF16 CorA PF01544.13 gi|257388539|ref|YP_003178312.1| - 2.3 7.1 5.4 3 6.8 2.3 2.1 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein Phage_GP20 PF06810.6 gi|257388539|ref|YP_003178312.1| - 4 6.8 14.2 0.13 11.6 1.3 3.6 2 1 2 4 4 4 0 Phage minor structural protein GP20 Sipho_Gp157 PF05565.6 gi|257388539|ref|YP_003178312.1| - 5.6 6.5 9.3 4.9 6.7 2.8 2.3 1 1 0 2 2 2 0 Siphovirus Gp157 LXG PF04740.7 gi|257388539|ref|YP_003178312.1| - 5.8 6.6 12.7 11 5.7 6.1 3.0 2 1 1 3 3 2 0 LXG domain of WXG superfamily AAA_23 PF13476.1 gi|257388539|ref|YP_003178312.1| - 6 7.1 13.2 13 5.9 9.1 1.6 1 1 0 1 1 1 0 AAA domain Med4 PF10018.4 gi|257388539|ref|YP_003178312.1| - 6.2 6.1 10.4 0.24 10.7 0.1 2.9 2 1 1 3 3 2 0 Vitamin-D-receptor interacting Mediator subunit 4 DUF848 PF05852.6 gi|257388539|ref|YP_003178312.1| - 9.6 6.0 10.7 17 5.1 5.7 2.5 1 1 1 2 2 2 0 Gammaherpesvirus protein of unknown function (DUF848) HisG PF01634.13 gi|257388540|ref|YP_003178313.1| - 0.057 12.9 0.0 0.23 11.0 0.0 1.9 2 0 0 2 2 2 0 ATP phosphoribosyltransferase Abhydrolase_2 PF02230.11 gi|257388541|ref|YP_003178314.1| - 1.4e-20 73.7 0.0 3.7e-20 72.3 0.0 1.6 1 1 0 1 1 1 1 Phospholipase/Carboxylesterase Abhydrolase_5 PF12695.2 gi|257388541|ref|YP_003178314.1| - 1.8e-13 50.4 0.2 2.3e-13 50.1 0.2 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|257388541|ref|YP_003178314.1| - 5.8e-11 42.7 3.9 3e-08 33.8 1.6 2.1 1 1 1 2 2 2 2 Alpha/beta hydrolase family DLH PF01738.13 gi|257388541|ref|YP_003178314.1| - 2.3e-06 27.0 0.0 3.1e-06 26.6 0.0 1.2 1 0 0 1 1 1 1 Dienelactone hydrolase family Abhydrolase_1 PF00561.15 gi|257388541|ref|YP_003178314.1| - 0.00077 19.0 0.1 0.0028 17.2 0.0 2.0 2 1 1 3 3 3 1 alpha/beta hydrolase fold Abhydrolase_3 PF07859.8 gi|257388541|ref|YP_003178314.1| - 0.0039 16.7 0.7 0.086 12.3 0.3 2.2 1 1 1 2 2 2 1 alpha/beta hydrolase fold FSH1 PF03959.8 gi|257388541|ref|YP_003178314.1| - 0.0055 16.1 0.0 0.008 15.6 0.0 1.4 1 0 0 1 1 1 1 Serine hydrolase (FSH1) PE-PPE PF08237.6 gi|257388541|ref|YP_003178314.1| - 0.017 14.5 0.0 0.027 13.9 0.0 1.4 1 0 0 1 1 1 0 PE-PPE domain Esterase_phd PF10503.4 gi|257388541|ref|YP_003178314.1| - 0.033 13.4 0.9 0.06 12.5 0.6 1.5 1 1 0 1 1 1 0 Esterase PHB depolymerase Cutinase PF01083.17 gi|257388541|ref|YP_003178314.1| - 0.055 13.2 0.0 0.23 11.1 0.0 2.0 2 1 0 2 2 2 0 Cutinase Peptidase_S9 PF00326.16 gi|257388541|ref|YP_003178314.1| - 0.072 12.3 0.9 7.1 5.7 0.1 2.8 3 0 0 3 3 3 0 Prolyl oligopeptidase family Mob_synth_C PF06463.8 gi|257388542|ref|YP_003178315.1| - 3.7e-32 110.7 0.0 5.7e-32 110.0 0.0 1.3 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Radical_SAM PF04055.16 gi|257388542|ref|YP_003178315.1| - 2.2e-21 76.7 0.0 3.6e-21 76.0 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.1 gi|257388542|ref|YP_003178315.1| - 7.4e-08 32.4 0.0 1.4e-07 31.5 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.1 gi|257388542|ref|YP_003178315.1| - 7.1e-07 29.4 0.0 1.3e-06 28.5 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Cytochrom_C PF00034.16 gi|257388542|ref|YP_003178315.1| - 0.032 15.0 0.0 4.4 8.2 0.0 2.6 2 0 0 2 2 2 0 Cytochrome c MoeA_N PF03453.12 gi|257388543|ref|YP_003178316.1| - 9.1e-41 138.9 0.2 2e-40 137.7 0.1 1.6 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|257388543|ref|YP_003178316.1| - 1.7e-28 98.8 0.1 2.7e-28 98.1 0.1 1.4 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.10 gi|257388543|ref|YP_003178316.1| - 1.8e-18 66.2 0.2 6e-18 64.5 0.2 2.0 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) MoeA_N PF03453.12 gi|257388544|ref|YP_003178317.1| - 2e-45 154.0 2.4 4e-45 153.0 1.7 1.5 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.19 gi|257388544|ref|YP_003178317.1| - 2.1e-26 92.0 0.9 6.5e-26 90.4 0.0 2.3 3 0 0 3 3 3 1 Probable molybdopterin binding domain PBP_like PF12727.2 gi|257388544|ref|YP_003178317.1| - 1.4e-24 86.0 0.2 6.1e-24 84.0 0.0 2.1 2 1 0 2 2 2 1 PBP superfamily domain MoeA_C PF03454.10 gi|257388544|ref|YP_003178317.1| - 5.4e-14 51.9 0.0 1.8e-13 50.2 0.0 2.0 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) FmdE PF02663.9 gi|257388544|ref|YP_003178317.1| - 0.16 11.9 0.1 0.34 10.7 0.0 1.5 1 0 0 1 1 1 0 FmdE, Molybdenum formylmethanofuran dehydrogenase operon DUF318 PF03773.8 gi|257388545|ref|YP_003178318.1| - 3.4e-61 206.9 10.5 3.9e-61 206.7 7.3 1.0 1 0 0 1 1 1 1 Predicted permease DUF3353 PF11833.3 gi|257388545|ref|YP_003178318.1| - 0.12 11.8 0.2 0.12 11.8 0.1 2.9 3 1 0 3 3 3 0 Protein of unknown function (DUF3353) HTH_5 PF01022.15 gi|257388546|ref|YP_003178319.1| - 2.6e-14 52.6 0.5 4.1e-14 51.9 0.3 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|257388546|ref|YP_003178319.1| - 2.9e-14 52.6 0.2 4.9e-14 51.8 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.14 gi|257388546|ref|YP_003178319.1| - 0.0001 21.9 0.0 0.00067 19.3 0.0 2.0 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB DUF4123 PF13503.1 gi|257388546|ref|YP_003178319.1| - 0.0014 18.6 0.0 0.0019 18.1 0.0 1.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4123) Penicillinase_R PF03965.11 gi|257388546|ref|YP_003178319.1| - 0.0035 17.3 0.0 0.007 16.4 0.0 1.5 1 0 0 1 1 1 1 Penicillinase repressor HTH_24 PF13412.1 gi|257388546|ref|YP_003178319.1| - 0.0036 16.6 0.0 0.023 14.0 0.0 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding PaaX PF07848.7 gi|257388546|ref|YP_003178319.1| - 0.0058 16.5 0.0 0.0098 15.8 0.0 1.4 1 0 0 1 1 1 1 PaaX-like protein Arg_repressor PF01316.16 gi|257388546|ref|YP_003178319.1| - 0.012 15.1 0.2 0.19 11.2 0.0 2.1 2 0 0 2 2 2 0 Arginine repressor, DNA binding domain MarR PF01047.17 gi|257388546|ref|YP_003178319.1| - 0.013 15.2 0.0 0.036 13.7 0.0 1.7 2 0 0 2 2 2 0 MarR family HTH_27 PF13463.1 gi|257388546|ref|YP_003178319.1| - 0.014 15.7 0.1 0.044 14.1 0.0 1.8 2 0 0 2 2 2 0 Winged helix DNA-binding domain Rrf2 PF02082.15 gi|257388546|ref|YP_003178319.1| - 0.015 15.4 0.0 0.031 14.3 0.0 1.7 2 0 0 2 2 2 0 Transcriptional regulator HTH_34 PF13601.1 gi|257388546|ref|YP_003178319.1| - 0.017 15.1 0.0 0.025 14.5 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|257388546|ref|YP_003178319.1| - 0.031 13.9 1.2 0.069 12.8 0.1 2.0 3 0 0 3 3 3 0 MarR family HTH_CodY PF08222.6 gi|257388546|ref|YP_003178319.1| - 0.034 13.4 0.0 0.083 12.2 0.0 1.6 2 0 0 2 2 2 0 CodY helix-turn-helix domain DUF2513 PF10711.4 gi|257388546|ref|YP_003178319.1| - 0.053 13.6 0.0 0.075 13.1 0.0 1.3 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) Fe_dep_repress PF01325.14 gi|257388546|ref|YP_003178319.1| - 0.06 13.3 0.0 0.13 12.2 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain TFIIE_alpha PF02002.12 gi|257388546|ref|YP_003178319.1| - 0.061 12.8 0.0 0.12 11.8 0.0 1.5 1 1 0 1 1 1 0 TFIIE alpha subunit PadR PF03551.9 gi|257388546|ref|YP_003178319.1| - 0.09 12.5 0.0 0.75 9.6 0.0 2.2 2 1 0 2 2 2 0 Transcriptional regulator PadR-like family Phage_integrase PF00589.17 gi|257388547|ref|YP_003178320.1| - 1.9e-16 60.1 0.0 3.1e-16 59.5 0.0 1.3 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.1 gi|257388547|ref|YP_003178320.1| - 7.6e-07 29.3 0.0 1.6e-06 28.3 0.0 1.5 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_1 PF02899.12 gi|257388547|ref|YP_003178320.1| - 1.1e-06 28.6 0.1 2.8e-06 27.3 0.0 1.6 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain HAMP PF00672.20 gi|257388550|ref|YP_003178323.1| - 3.2e-10 40.0 10.1 9.9e-08 32.0 0.1 4.0 3 1 0 3 3 3 2 HAMP domain MCPsignal PF00015.16 gi|257388550|ref|YP_003178323.1| - 0.0052 16.3 10.7 0.0052 16.3 7.4 3.2 3 1 2 5 5 5 1 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF2371 PF10177.4 gi|257388550|ref|YP_003178323.1| - 0.013 15.3 0.0 0.68 9.8 0.0 2.6 2 0 0 2 2 2 0 Uncharacterised conserved protein (DUF2371) GST_C_3 PF14497.1 gi|257388550|ref|YP_003178323.1| - 0.039 14.4 2.4 0.11 12.9 0.1 2.7 2 1 0 2 2 2 0 Glutathione S-transferase, C-terminal domain Laminin_II PF06009.7 gi|257388550|ref|YP_003178323.1| - 0.052 13.2 8.8 0.58 9.9 4.1 3.3 1 1 2 3 3 3 0 Laminin Domain II Corona_S2 PF01601.11 gi|257388550|ref|YP_003178323.1| - 0.18 9.8 2.0 0.32 9.0 1.4 1.4 1 0 0 1 1 1 0 Coronavirus S2 glycoprotein IFT57 PF10498.4 gi|257388550|ref|YP_003178323.1| - 0.23 10.1 19.4 4.8 5.8 13.5 2.3 1 1 0 1 1 1 0 Intra-flagellar transport protein 57 V_ATPase_I PF01496.14 gi|257388550|ref|YP_003178323.1| - 0.36 8.6 13.2 0.1 10.4 6.9 1.7 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family Prominin PF05478.6 gi|257388550|ref|YP_003178323.1| - 3.5 5.0 9.3 6.9 4.0 4.0 2.4 2 1 0 2 2 2 0 Prominin DUF1664 PF07889.7 gi|257388550|ref|YP_003178323.1| - 3.8 7.3 17.8 0.028 14.2 2.6 3.8 4 0 0 4 4 4 0 Protein of unknown function (DUF1664) COG2 PF06148.6 gi|257388550|ref|YP_003178323.1| - 4.6 7.1 16.5 2.7 7.8 2.2 4.2 2 1 2 4 4 4 0 COG (conserved oligomeric Golgi) complex component, COG2 PspB PF06667.7 gi|257388550|ref|YP_003178323.1| - 5 7.1 6.5 39 4.2 0.1 3.5 2 1 1 3 3 3 0 Phage shock protein B PfkB PF00294.19 gi|257388551|ref|YP_003178324.1| - 2e-50 171.6 0.2 2.2e-50 171.5 0.1 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.7 gi|257388551|ref|YP_003178324.1| - 0.029 13.5 0.0 0.056 12.6 0.0 1.4 1 0 0 1 1 1 0 Phosphomethylpyrimidine kinase PK PF00224.16 gi|257388552|ref|YP_003178325.1| - 1.9e-112 375.3 2.3 2.8e-112 374.8 1.6 1.2 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.11 gi|257388552|ref|YP_003178325.1| - 6.6e-33 112.7 0.7 6.6e-33 112.7 0.5 1.7 2 0 0 2 2 2 1 Pyruvate kinase, alpha/beta domain PEP-utilizers PF00391.18 gi|257388552|ref|YP_003178325.1| - 2.1e-13 49.6 7.2 2.8e-13 49.2 0.5 3.8 4 0 0 4 4 4 1 PEP-utilising enzyme, mobile domain HpcH_HpaI PF03328.9 gi|257388552|ref|YP_003178325.1| - 0.019 13.8 2.6 0.034 13.0 0.6 2.2 1 1 2 3 3 3 0 HpcH/HpaI aldolase/citrate lyase family ROK PF00480.15 gi|257388553|ref|YP_003178326.1| - 7e-30 104.1 0.1 1e-29 103.6 0.1 1.2 1 0 0 1 1 1 1 ROK family BcrAD_BadFG PF01869.15 gi|257388553|ref|YP_003178326.1| - 0.0037 16.6 0.2 0.016 14.5 0.0 1.9 2 0 0 2 2 2 1 BadF/BadG/BcrA/BcrD ATPase family FGGY_N PF00370.16 gi|257388553|ref|YP_003178326.1| - 0.019 14.3 0.0 0.056 12.7 0.0 1.7 1 1 0 1 1 1 0 FGGY family of carbohydrate kinases, N-terminal domain FtsA PF14450.1 gi|257388553|ref|YP_003178326.1| - 0.02 14.7 0.3 0.054 13.3 0.0 1.7 2 1 0 2 2 2 0 Cell division protein FtsA AAA_16 PF13191.1 gi|257388554|ref|YP_003178327.1| - 4.7e-10 39.7 2.4 3.3e-09 36.9 0.0 2.6 2 2 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.1 gi|257388554|ref|YP_003178327.1| - 6.4e-05 23.0 0.0 0.00017 21.7 0.0 1.6 2 0 0 2 2 2 1 AAA domain HTH_24 PF13412.1 gi|257388554|ref|YP_003178327.1| - 0.018 14.4 0.0 0.13 11.6 0.0 2.2 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding AAA_25 PF13481.1 gi|257388554|ref|YP_003178327.1| - 0.02 14.3 0.1 0.52 9.6 0.0 2.9 3 0 0 3 3 3 0 AAA domain HTH_20 PF12840.2 gi|257388554|ref|YP_003178327.1| - 0.029 14.1 1.1 0.15 11.8 0.0 2.6 3 0 0 3 3 3 0 Helix-turn-helix domain AAA_19 PF13245.1 gi|257388554|ref|YP_003178327.1| - 0.085 12.6 0.2 0.29 10.9 0.1 1.9 1 0 0 1 1 1 0 Part of AAA domain AAA_29 PF13555.1 gi|257388554|ref|YP_003178327.1| - 0.14 11.7 0.3 0.31 10.6 0.0 1.7 2 0 0 2 2 2 0 P-loop containing region of AAA domain SMC_N PF02463.14 gi|257388554|ref|YP_003178327.1| - 0.16 11.1 0.0 0.27 10.4 0.0 1.3 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain MIP PF00230.15 gi|257388555|ref|YP_003178328.1| - 1.6e-44 152.0 12.7 7.7e-43 146.5 8.8 2.0 1 1 0 1 1 1 1 Major intrinsic protein Sensor_TM1 PF13755.1 gi|257388555|ref|YP_003178328.1| - 0.036 13.5 0.3 0.085 12.3 0.2 1.6 1 0 0 1 1 1 0 Sensor N-terminal transmembrane domain FGGY_N PF00370.16 gi|257388556|ref|YP_003178329.1| - 5.2e-75 251.9 0.0 7.2e-75 251.4 0.0 1.2 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.11 gi|257388556|ref|YP_003178329.1| - 1.8e-58 197.4 1.0 2.8e-58 196.8 0.7 1.3 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain BcrAD_BadFG PF01869.15 gi|257388556|ref|YP_003178329.1| - 0.0039 16.5 0.2 0.27 10.4 0.0 2.2 2 0 0 2 2 2 2 BadF/BadG/BcrA/BcrD ATPase family MCPsignal PF00015.16 gi|257388557|ref|YP_003178330.1| - 4.3e-44 150.6 55.6 2.5e-43 148.1 20.7 4.1 2 1 2 4 4 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain SBP_bac_8 PF13416.1 gi|257388557|ref|YP_003178330.1| - 4.2e-41 141.5 0.0 9.8e-41 140.3 0.0 1.7 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|257388557|ref|YP_003178330.1| - 2.2e-20 73.6 0.0 3.3e-20 73.0 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein PhageMin_Tail PF10145.4 gi|257388557|ref|YP_003178330.1| - 7.1e-06 25.8 0.7 7.1e-06 25.8 0.5 2.7 1 1 1 2 2 2 1 Phage-related minor tail protein DUF948 PF06103.6 gi|257388557|ref|YP_003178330.1| - 0.0035 17.1 26.3 0.22 11.4 2.8 6.1 5 1 2 7 7 7 3 Bacterial protein of unknown function (DUF948) LOH1CR12 PF10158.4 gi|257388557|ref|YP_003178330.1| - 0.0038 17.0 4.7 0.32 10.7 0.2 3.5 2 1 0 2 2 2 1 Tumour suppressor protein AAA_13 PF13166.1 gi|257388557|ref|YP_003178330.1| - 0.0089 14.5 22.3 0.17 10.3 4.7 2.5 1 1 1 2 2 2 2 AAA domain Atg14 PF10186.4 gi|257388557|ref|YP_003178330.1| - 0.013 14.4 13.1 0.91 8.4 0.1 3.3 3 0 0 3 3 3 0 UV radiation resistance protein and autophagy-related subunit 14 DUF2365 PF10157.4 gi|257388557|ref|YP_003178330.1| - 0.02 14.7 0.6 0.02 14.7 0.4 2.8 2 1 1 3 3 3 0 Uncharacterized conserved protein (DUF2365) DUF1664 PF07889.7 gi|257388557|ref|YP_003178330.1| - 0.023 14.4 24.1 0.092 12.5 0.3 5.0 3 2 1 5 5 5 0 Protein of unknown function (DUF1664) APG17 PF04108.7 gi|257388557|ref|YP_003178330.1| - 0.025 13.4 16.5 0.038 12.7 9.1 2.5 2 1 1 3 3 3 0 Autophagy protein Apg17 IFT57 PF10498.4 gi|257388557|ref|YP_003178330.1| - 0.028 13.1 18.3 0.19 10.4 6.5 3.0 2 1 0 2 2 2 0 Intra-flagellar transport protein 57 Prominin PF05478.6 gi|257388557|ref|YP_003178330.1| - 0.047 11.2 7.2 0.042 11.3 4.1 1.5 1 1 0 1 1 1 0 Prominin IncA PF04156.9 gi|257388557|ref|YP_003178330.1| - 0.12 11.9 30.6 0.21 11.1 2.5 4.2 2 1 2 4 4 4 0 IncA protein DUF651 PF04895.7 gi|257388557|ref|YP_003178330.1| - 0.29 10.7 7.0 3.7 7.1 0.1 3.8 3 1 1 4 4 3 0 Archaeal protein of unknown function (DUF651) Mnd1 PF03962.10 gi|257388557|ref|YP_003178330.1| - 0.4 10.3 28.0 0.23 11.1 0.8 4.2 2 1 3 5 5 5 0 Mnd1 family Laminin_II PF06009.7 gi|257388557|ref|YP_003178330.1| - 0.75 9.5 34.5 0.12 12.1 4.5 4.5 4 2 2 6 6 5 0 Laminin Domain II Ran-binding PF05508.6 gi|257388557|ref|YP_003178330.1| - 1.1 8.0 7.3 0.43 9.4 0.5 2.6 2 0 0 2 2 2 0 RanGTP-binding protein Dor1 PF04124.7 gi|257388557|ref|YP_003178330.1| - 1.4 7.2 11.1 0.73 8.2 1.7 2.5 2 0 0 2 2 2 0 Dor1-like family NPV_P10 PF05531.7 gi|257388557|ref|YP_003178330.1| - 1.6 9.0 26.9 4.4 7.6 3.4 6.2 5 2 2 7 7 6 0 Nucleopolyhedrovirus P10 protein Spectrin PF00435.16 gi|257388557|ref|YP_003178330.1| - 1.7 8.9 16.5 15 5.8 0.4 5.2 1 1 4 6 6 6 0 Spectrin repeat Seryl_tRNA_N PF02403.17 gi|257388557|ref|YP_003178330.1| - 2.7 8.0 24.0 1.6 8.7 2.1 5.1 3 2 3 6 6 6 0 Seryl-tRNA synthetase N-terminal domain CheZ PF04344.8 gi|257388557|ref|YP_003178330.1| - 2.7 7.5 22.8 0.012 15.2 2.6 3.2 3 0 0 3 3 2 0 Chemotaxis phosphatase, CheZ APG6 PF04111.7 gi|257388557|ref|YP_003178330.1| - 3.3 6.6 23.8 0.19 10.7 0.5 3.5 3 0 0 3 3 3 0 Autophagy protein Apg6 DUF3450 PF11932.3 gi|257388557|ref|YP_003178330.1| - 3.7 6.7 26.1 0.29 10.3 2.5 4.1 3 1 0 3 3 3 0 Protein of unknown function (DUF3450) Spc7 PF08317.6 gi|257388557|ref|YP_003178330.1| - 3.8 6.0 25.2 2.8 6.5 3.4 3.2 1 1 2 3 3 3 0 Spc7 kinetochore protein TPR_MLP1_2 PF07926.7 gi|257388557|ref|YP_003178330.1| - 4.2 7.1 27.2 0.044 13.5 0.8 4.0 3 1 0 3 3 3 0 TPR/MLP1/MLP2-like protein BLOC1_2 PF10046.4 gi|257388557|ref|YP_003178330.1| - 4.4 7.5 24.3 1.5 8.9 1.2 5.5 4 2 2 6 6 6 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Syntaxin PF00804.20 gi|257388557|ref|YP_003178330.1| - 4.6 7.4 25.0 12 6.0 2.0 4.7 2 1 2 4 4 4 0 Syntaxin V_ATPase_I PF01496.14 gi|257388557|ref|YP_003178330.1| - 7 4.3 22.1 0.13 10.0 9.7 1.9 1 1 0 2 2 2 0 V-type ATPase 116kDa subunit family TMP_2 PF06791.8 gi|257388557|ref|YP_003178330.1| - 8.6 5.9 22.4 4.3 6.9 4.6 3.2 1 1 0 2 2 2 0 Prophage tail length tape measure protein Reo_sigmaC PF04582.7 gi|257388557|ref|YP_003178330.1| - 9.8 5.2 31.2 6.8 5.7 3.7 3.3 1 1 2 4 4 4 0 Reovirus sigma C capsid protein DAO PF01266.19 gi|257388558|ref|YP_003178331.1| - 1.3e-63 215.1 6.3 5.1e-63 213.1 4.3 1.9 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|257388558|ref|YP_003178331.1| - 1.2e-08 35.0 0.0 1.4e-06 28.3 0.0 2.2 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|257388558|ref|YP_003178331.1| - 2.3e-08 33.3 9.2 6.9e-08 31.7 6.4 1.7 1 1 0 1 1 1 1 FAD binding domain Fer2_BFD PF04324.10 gi|257388558|ref|YP_003178331.1| - 1.3e-06 28.3 1.0 3.5e-06 26.9 0.7 1.7 1 0 0 1 1 1 1 BFD-like [2Fe-2S] binding domain FAD_oxidored PF12831.2 gi|257388558|ref|YP_003178331.1| - 0.00023 20.3 8.5 0.00097 18.3 5.9 1.9 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.1 gi|257388558|ref|YP_003178331.1| - 0.00063 19.8 0.4 0.17 11.9 0.1 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.1 gi|257388558|ref|YP_003178331.1| - 0.0019 18.1 1.5 0.0063 16.5 0.5 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.22 gi|257388558|ref|YP_003178331.1| - 0.0023 18.2 1.1 0.0023 18.2 0.7 2.1 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|257388558|ref|YP_003178331.1| - 0.0038 16.8 0.3 0.008 15.8 0.2 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Thi4 PF01946.12 gi|257388558|ref|YP_003178331.1| - 0.0046 16.0 3.2 0.19 10.8 0.1 2.3 2 0 0 2 2 2 1 Thi4 family GIDA PF01134.17 gi|257388558|ref|YP_003178331.1| - 0.026 13.4 4.0 0.4 9.4 0.9 2.1 2 0 0 2 2 2 0 Glucose inhibited division protein A NAD_binding_7 PF13241.1 gi|257388558|ref|YP_003178331.1| - 0.033 14.4 0.3 0.074 13.3 0.2 1.7 1 1 0 1 1 1 0 Putative NAD(P)-binding HI0933_like PF03486.9 gi|257388558|ref|YP_003178331.1| - 0.049 12.0 1.9 0.19 10.1 0.1 2.2 2 0 0 2 2 2 0 HI0933-like protein ApbA PF02558.11 gi|257388558|ref|YP_003178331.1| - 0.053 12.9 0.3 0.15 11.5 0.2 1.8 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA FAD_binding_3 PF01494.14 gi|257388558|ref|YP_003178331.1| - 0.059 12.4 9.1 0.25 10.3 6.3 1.9 1 1 0 1 1 1 0 FAD binding domain FAIM1 PF06905.8 gi|257388558|ref|YP_003178331.1| - 0.074 12.2 0.1 0.13 11.3 0.1 1.3 1 0 0 1 1 1 0 Fas apoptotic inhibitory molecule (FAIM1) K_oxygenase PF13434.1 gi|257388558|ref|YP_003178331.1| - 0.26 10.1 0.8 0.85 8.4 0.1 1.9 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_9 PF13454.1 gi|257388558|ref|YP_003178331.1| - 0.49 10.1 3.5 13 5.5 0.2 2.5 2 0 0 2 2 2 0 FAD-NAD(P)-binding Trp_halogenase PF04820.9 gi|257388558|ref|YP_003178331.1| - 0.85 8.1 4.1 0.19 10.3 0.5 1.6 2 0 0 2 2 2 0 Tryptophan halogenase FAD_binding_2 PF00890.19 gi|257388559|ref|YP_003178332.1| - 1.1e-37 129.9 3.3 1.3e-37 129.6 2.3 1.0 1 0 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.2 gi|257388559|ref|YP_003178332.1| - 5.6e-07 28.9 6.5 6.1e-06 25.5 3.1 2.5 3 0 0 3 3 3 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|257388559|ref|YP_003178332.1| - 7.2e-07 29.2 0.1 0.0047 16.8 0.2 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|257388559|ref|YP_003178332.1| - 5.3e-06 25.5 1.6 8.8e-06 24.8 0.7 1.6 2 0 0 2 2 2 1 Glucose inhibited division protein A DAO PF01266.19 gi|257388559|ref|YP_003178332.1| - 8.6e-06 24.8 4.6 0.0049 15.8 2.8 2.4 2 1 0 2 2 2 2 FAD dependent oxidoreductase HI0933_like PF03486.9 gi|257388559|ref|YP_003178332.1| - 0.00012 20.6 0.1 0.015 13.8 0.3 2.3 2 0 0 2 2 2 2 HI0933-like protein Pyr_redox PF00070.22 gi|257388559|ref|YP_003178332.1| - 0.0013 19.1 0.5 0.0036 17.6 0.4 1.8 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|257388559|ref|YP_003178332.1| - 0.0022 17.0 0.9 0.0043 16.1 0.6 1.5 1 0 0 1 1 1 1 FAD binding domain 3HCDH_N PF02737.13 gi|257388559|ref|YP_003178332.1| - 0.0029 17.3 0.9 0.0046 16.6 0.6 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_8 PF13450.1 gi|257388559|ref|YP_003178332.1| - 0.013 15.4 1.7 0.039 13.9 1.2 1.8 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain NAD_binding_7 PF13241.1 gi|257388559|ref|YP_003178332.1| - 0.014 15.6 0.1 0.032 14.4 0.0 1.6 1 0 0 1 1 1 0 Putative NAD(P)-binding CCG PF02754.11 gi|257388560|ref|YP_003178333.1| - 3.2e-18 65.5 7.7 3.2e-09 36.6 0.0 2.7 3 0 0 3 3 2 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|257388560|ref|YP_003178333.1| - 2.3e-08 33.9 5.6 2.3e-08 33.9 3.9 3.1 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_17 PF13534.1 gi|257388560|ref|YP_003178333.1| - 3.1e-06 27.4 7.7 3.1e-06 27.4 5.3 3.4 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|257388560|ref|YP_003178333.1| - 2.9e-05 24.4 8.8 0.012 16.0 0.3 3.6 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|257388560|ref|YP_003178333.1| - 0.00021 21.5 10.6 0.00021 21.5 7.4 2.5 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|257388560|ref|YP_003178333.1| - 0.00022 21.4 16.9 0.00036 20.7 8.2 3.4 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|257388560|ref|YP_003178333.1| - 0.00079 19.1 17.3 0.0027 17.4 9.9 3.2 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|257388560|ref|YP_003178333.1| - 0.052 14.2 17.3 0.11 13.1 1.2 3.5 3 1 1 4 4 3 0 4Fe-4S double cluster binding domain Fer4_21 PF14697.1 gi|257388560|ref|YP_003178333.1| - 0.068 13.0 13.0 0.12 12.2 1.2 3.3 4 0 0 4 4 4 0 4Fe-4S dicluster domain zf-CSL PF05207.8 gi|257388560|ref|YP_003178333.1| - 0.3 10.6 0.0 0.3 10.6 0.0 4.1 4 1 0 4 4 4 0 CSL zinc finger Fer4_2 PF12797.2 gi|257388560|ref|YP_003178333.1| - 1.6 8.7 17.0 1.3 9.1 1.7 3.3 3 0 0 3 3 3 0 4Fe-4S binding domain Fer4 PF00037.22 gi|257388560|ref|YP_003178333.1| - 1.9 8.2 19.9 0.37 10.4 2.3 2.9 3 0 0 3 3 3 0 4Fe-4S binding domain Usp PF00582.21 gi|257388561|ref|YP_003178334.1| - 1.8e-20 73.5 0.4 2.1e-20 73.3 0.3 1.1 1 0 0 1 1 1 1 Universal stress protein family KR PF08659.5 gi|257388561|ref|YP_003178334.1| - 0.036 13.7 0.0 0.072 12.7 0.0 1.5 1 0 0 1 1 1 0 KR domain ABC2_membrane_4 PF12730.2 gi|257388562|ref|YP_003178335.1| - 3.1e-06 26.5 11.1 3.1e-06 26.5 7.7 2.7 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|257388562|ref|YP_003178335.1| - 3.4e-05 22.8 9.9 3.4e-05 22.8 6.9 2.3 3 1 0 3 3 3 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|257388562|ref|YP_003178335.1| - 0.00016 20.8 11.9 0.00016 20.8 8.3 2.3 2 0 0 2 2 2 1 ABC-2 family transporter protein DUF697 PF05128.7 gi|257388562|ref|YP_003178335.1| - 6.4 6.2 7.8 0.77 9.2 0.1 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF697) ABC_tran PF00005.22 gi|257388563|ref|YP_003178336.1| - 3.7e-30 105.0 0.0 5.7e-30 104.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|257388563|ref|YP_003178336.1| - 1.5e-10 41.5 0.0 7.2e-05 22.8 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|257388563|ref|YP_003178336.1| - 1.2e-05 24.7 0.0 2.5e-05 23.7 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|257388563|ref|YP_003178336.1| - 7.5e-05 23.1 0.0 9.9e-05 22.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|257388563|ref|YP_003178336.1| - 0.00047 20.0 0.1 0.0072 16.2 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|257388563|ref|YP_003178336.1| - 0.0015 18.5 0.0 0.0023 17.9 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.14 gi|257388563|ref|YP_003178336.1| - 0.0082 15.3 0.0 0.065 12.4 0.0 2.0 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_30 PF13604.1 gi|257388563|ref|YP_003178336.1| - 0.016 14.8 0.0 0.048 13.2 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_15 PF13175.1 gi|257388563|ref|YP_003178336.1| - 0.021 13.9 0.0 1.7 7.6 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain DUF258 PF03193.11 gi|257388563|ref|YP_003178336.1| - 0.023 13.8 0.0 0.034 13.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|257388563|ref|YP_003178336.1| - 0.06 13.4 0.0 0.12 12.5 0.0 1.5 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.7 gi|257388563|ref|YP_003178336.1| - 0.13 11.3 0.0 0.19 10.8 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin PEPcase PF00311.12 gi|257388564|ref|YP_003178337.1| - 1.7e-235 783.6 0.0 2.2e-235 783.2 0.0 1.2 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase PEPcase_2 PF14010.1 gi|257388564|ref|YP_003178337.1| - 0.0038 15.6 0.0 0.0072 14.6 0.0 1.4 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase Abhydrolase_6 PF12697.2 gi|257388565|ref|YP_003178338.1| - 1.5e-37 129.7 3.3 1.7e-37 129.5 2.3 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|257388565|ref|YP_003178338.1| - 1.4e-22 79.9 0.2 3.1e-21 75.6 0.2 2.0 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|257388565|ref|YP_003178338.1| - 5.7e-21 75.1 0.0 1.4e-19 70.5 0.0 2.0 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_4 PF08386.5 gi|257388565|ref|YP_003178338.1| - 1.5e-07 31.2 0.0 3.2e-07 30.2 0.0 1.6 1 0 0 1 1 1 1 TAP-like protein Esterase_phd PF10503.4 gi|257388565|ref|YP_003178338.1| - 0.008 15.4 0.1 0.52 9.5 0.0 2.2 2 0 0 2 2 2 1 Esterase PHB depolymerase Peptidase_S9 PF00326.16 gi|257388565|ref|YP_003178338.1| - 0.023 13.9 0.2 0.19 10.9 0.0 2.4 3 0 0 3 3 3 0 Prolyl oligopeptidase family DLH PF01738.13 gi|257388565|ref|YP_003178338.1| - 0.029 13.6 0.0 0.44 9.8 0.0 2.2 2 0 0 2 2 2 0 Dienelactone hydrolase family UPF0227 PF05728.7 gi|257388565|ref|YP_003178338.1| - 0.064 12.9 0.0 1.1 8.9 0.0 2.2 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0227) Ndr PF03096.9 gi|257388565|ref|YP_003178338.1| - 0.084 11.3 0.0 0.12 10.8 0.0 1.1 1 0 0 1 1 1 0 Ndr family FSH1 PF03959.8 gi|257388565|ref|YP_003178338.1| - 0.15 11.4 0.0 0.26 10.7 0.0 1.4 1 0 0 1 1 1 0 Serine hydrolase (FSH1) AMP-binding PF00501.23 gi|257388566|ref|YP_003178339.1| - 4.8e-85 285.4 0.0 6.3e-85 285.0 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|257388566|ref|YP_003178339.1| - 9.6e-14 52.0 0.1 2e-13 51.0 0.1 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain HTH_10 PF04967.7 gi|257388567|ref|YP_003178340.1| - 4.1e-17 61.4 0.0 6.5e-17 60.8 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain MarR_2 PF12802.2 gi|257388567|ref|YP_003178340.1| - 0.0026 17.3 0.0 0.0086 15.7 0.0 1.9 2 0 0 2 2 2 1 MarR family Sigma70_r4 PF04545.11 gi|257388567|ref|YP_003178340.1| - 0.047 12.9 0.0 0.099 11.9 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_24 PF13412.1 gi|257388567|ref|YP_003178340.1| - 0.05 12.9 0.0 0.12 11.7 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding UPF0122 PF04297.9 gi|257388567|ref|YP_003178340.1| - 0.068 13.1 0.0 0.19 11.7 0.0 1.7 2 0 0 2 2 2 0 Putative helix-turn-helix protein, YlxM / p13 like Peripla_BP_6 PF13458.1 gi|257388568|ref|YP_003178341.1| - 4.8e-62 210.3 9.1 7e-62 209.7 6.3 1.2 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.1 gi|257388568|ref|YP_003178341.1| - 8.3e-21 74.1 0.1 2e-20 72.9 0.1 1.5 1 1 0 1 1 1 1 Periplasmic binding protein domain ANF_receptor PF01094.23 gi|257388568|ref|YP_003178341.1| - 4.3e-11 42.2 0.1 5.8e-11 41.7 0.1 1.1 1 0 0 1 1 1 1 Receptor family ligand binding region ABC_tran PF00005.22 gi|257388569|ref|YP_003178342.1| - 9.7e-22 77.7 0.0 1.3e-21 77.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.3 gi|257388569|ref|YP_003178342.1| - 1e-10 41.0 1.5 1.5e-10 40.5 0.1 2.0 2 0 0 2 2 2 1 Branched-chain amino acid ATP-binding cassette transporter AAA_21 PF13304.1 gi|257388569|ref|YP_003178342.1| - 3.1e-07 30.6 0.0 0.0016 18.4 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|257388569|ref|YP_003178342.1| - 7.8e-06 26.3 0.0 9e-06 26.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|257388569|ref|YP_003178342.1| - 0.0004 19.8 0.0 0.00075 18.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|257388569|ref|YP_003178342.1| - 0.0067 16.5 0.1 0.083 13.0 0.1 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|257388569|ref|YP_003178342.1| - 0.012 14.8 0.1 0.047 12.9 0.1 1.8 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_16 PF13191.1 gi|257388569|ref|YP_003178342.1| - 0.02 14.8 1.5 0.06 13.3 1.0 1.7 1 1 0 1 1 1 0 AAA ATPase domain DUF258 PF03193.11 gi|257388569|ref|YP_003178342.1| - 0.063 12.4 0.0 0.095 11.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_33 PF13671.1 gi|257388569|ref|YP_003178342.1| - 0.088 12.6 0.1 0.22 11.4 0.1 1.9 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.22 gi|257388570|ref|YP_003178343.1| - 1.3e-28 99.9 0.0 1.7e-28 99.6 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|257388570|ref|YP_003178343.1| - 1.9e-06 28.0 0.0 0.05 13.5 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|257388570|ref|YP_003178343.1| - 0.0018 17.7 0.1 0.0034 16.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|257388570|ref|YP_003178343.1| - 0.0055 16.8 0.1 0.016 15.3 0.0 1.9 1 1 0 1 1 1 1 AAA domain NB-ARC PF00931.17 gi|257388570|ref|YP_003178343.1| - 0.02 13.7 0.0 0.028 13.2 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain NACHT PF05729.7 gi|257388570|ref|YP_003178343.1| - 0.031 13.9 0.1 0.094 12.3 0.0 1.7 2 0 0 2 2 2 0 NACHT domain UPF0079 PF02367.12 gi|257388570|ref|YP_003178343.1| - 0.033 13.8 0.0 0.059 13.0 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_16 PF13191.1 gi|257388570|ref|YP_003178343.1| - 0.042 13.8 2.9 0.19 11.6 2.0 2.0 1 1 0 1 1 1 0 AAA ATPase domain AAA_25 PF13481.1 gi|257388570|ref|YP_003178343.1| - 0.059 12.7 0.2 0.14 11.5 0.1 1.9 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|257388570|ref|YP_003178343.1| - 0.061 13.6 0.0 0.069 13.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.17 gi|257388570|ref|YP_003178343.1| - 0.089 12.2 0.1 0.15 11.4 0.1 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain DUF258 PF03193.11 gi|257388570|ref|YP_003178343.1| - 0.1 11.7 0.1 0.15 11.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function, DUF258 MobB PF03205.9 gi|257388570|ref|YP_003178343.1| - 0.11 12.1 0.3 0.22 11.1 0.0 1.7 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA PF00004.24 gi|257388570|ref|YP_003178343.1| - 0.14 12.3 0.0 0.23 11.6 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.1 gi|257388570|ref|YP_003178343.1| - 0.2 11.2 1.4 0.66 9.5 0.0 2.2 2 1 1 3 3 3 0 AAA domain BPD_transp_2 PF02653.11 gi|257388571|ref|YP_003178344.1| - 3.6e-39 134.3 40.3 4.2e-39 134.1 27.9 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.11 gi|257388572|ref|YP_003178345.1| - 2.8e-32 111.7 22.1 2.8e-32 111.7 15.3 1.7 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component ACP_syn_III_C PF08541.5 gi|257388573|ref|YP_003178346.1| - 9e-18 64.0 1.2 1.4e-15 57.0 0.0 3.3 4 1 0 4 4 4 2 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ACP_syn_III PF08545.5 gi|257388573|ref|YP_003178346.1| - 5e-13 48.5 1.6 5.2e-13 48.4 0.2 1.7 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GFO_IDH_MocA PF01408.17 gi|257388575|ref|YP_003178348.1| - 1.6e-22 80.2 0.0 3e-22 79.3 0.0 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold TrkA_N PF02254.13 gi|257388575|ref|YP_003178348.1| - 0.0059 16.6 0.0 0.012 15.6 0.0 1.6 1 1 0 1 1 1 1 TrkA-N domain GFO_IDH_MocA_C PF02894.12 gi|257388575|ref|YP_003178348.1| - 0.0093 15.7 0.0 0.021 14.6 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain Semialdhyde_dh PF01118.19 gi|257388575|ref|YP_003178348.1| - 0.029 14.6 0.0 0.07 13.4 0.0 1.6 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain DnaJ PF00226.26 gi|257388576|ref|YP_003178349.1| - 3.8e-18 64.9 0.5 5.6e-18 64.4 0.4 1.3 1 0 0 1 1 1 1 DnaJ domain Mucin PF01456.12 gi|257388576|ref|YP_003178349.1| - 3.3 7.4 14.2 6.5 6.5 9.8 1.4 1 0 0 1 1 1 0 Mucin-like glycoprotein MS_channel PF00924.13 gi|257388576|ref|YP_003178349.1| - 5.2 6.3 5.0 8.3 5.6 3.5 1.3 1 0 0 1 1 1 0 Mechanosensitive ion channel TPP_enzyme_N PF02776.13 gi|257388577|ref|YP_003178350.1| - 3.2e-33 114.6 0.4 8.4e-33 113.2 0.2 1.8 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|257388577|ref|YP_003178350.1| - 0.00013 21.5 0.0 0.00025 20.6 0.0 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|257388577|ref|YP_003178350.1| - 0.055 13.2 0.0 0.12 12.1 0.0 1.6 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, central domain UPF0058 PF01893.11 gi|257388579|ref|YP_003178352.1| - 2.7e-32 110.6 0.3 3e-32 110.5 0.2 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 HTH_24 PF13412.1 gi|257388580|ref|YP_003178353.1| - 9.4e-06 24.9 0.0 2.2e-05 23.7 0.0 1.7 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_32 PF13565.1 gi|257388580|ref|YP_003178353.1| - 0.00042 21.0 0.3 0.0026 18.5 0.0 2.1 2 0 0 2 2 2 1 Homeodomain-like domain HTH_Tnp_Tc3_2 PF01498.13 gi|257388580|ref|YP_003178353.1| - 0.0021 18.0 0.0 0.0042 17.1 0.0 1.5 1 0 0 1 1 1 1 Transposase HTH_27 PF13463.1 gi|257388580|ref|YP_003178353.1| - 0.012 15.9 0.0 0.024 14.9 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain CAMSAP_CKK PF08683.6 gi|257388580|ref|YP_003178353.1| - 0.02 14.5 0.0 0.025 14.3 0.0 1.2 1 0 0 1 1 1 0 Microtubule-binding calmodulin-regulated spectrin-associated HTH_AsnC-type PF13404.1 gi|257388580|ref|YP_003178353.1| - 0.026 14.0 1.0 0.058 12.9 0.7 1.6 1 1 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_5 PF01022.15 gi|257388580|ref|YP_003178353.1| - 0.027 14.1 0.2 0.24 11.0 0.2 2.2 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family UMPH-1 PF05822.7 gi|257388580|ref|YP_003178353.1| - 0.05 12.9 0.0 0.075 12.3 0.0 1.2 1 0 0 1 1 1 0 Pyrimidine 5'-nucleotidase (UMPH-1) PHZA_PHZB PF03284.8 gi|257388580|ref|YP_003178353.1| - 0.065 12.3 0.5 2.2 7.3 0.4 2.3 1 1 0 1 1 1 0 Phenazine biosynthesis protein A/B HTH_Crp_2 PF13545.1 gi|257388580|ref|YP_003178353.1| - 0.08 12.7 0.0 0.18 11.6 0.0 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_20 PF12840.2 gi|257388580|ref|YP_003178353.1| - 0.11 12.3 0.1 0.17 11.7 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain Ribonuc_red_sm PF00268.16 gi|257388581|ref|YP_003178354.1| - 0.028 13.4 0.0 0.054 12.5 0.0 1.4 1 1 0 1 1 1 0 Ribonucleotide reductase, small chain ECH PF00378.15 gi|257388582|ref|YP_003178355.1| - 3.7e-49 167.0 0.7 4.2e-49 166.8 0.5 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase family AP_endonuc_2 PF01261.19 gi|257388582|ref|YP_003178355.1| - 0.19 10.9 1.4 0.36 10.0 0.4 1.9 2 0 0 2 2 2 0 Xylose isomerase-like TIM barrel FAD_binding_7 PF03441.9 gi|257388583|ref|YP_003178356.1| - 1.2e-99 333.0 1.5 1.4e-99 332.7 1.1 1.1 1 0 0 1 1 1 1 FAD binding domain of DNA photolyase DNA_photolyase PF00875.13 gi|257388583|ref|YP_003178356.1| - 2.4e-43 147.7 0.0 2.9e-41 140.9 0.0 2.3 2 0 0 2 2 2 2 DNA photolyase Usp PF00582.21 gi|257388583|ref|YP_003178356.1| - 0.03 14.4 0.1 0.12 12.5 0.0 2.0 2 0 0 2 2 2 0 Universal stress protein family Sod_Fe_C PF02777.13 gi|257388584|ref|YP_003178357.1| - 9.3e-37 125.1 0.1 1.8e-36 124.2 0.1 1.4 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, C-terminal domain Sod_Fe_N PF00081.17 gi|257388584|ref|YP_003178357.1| - 7.9e-31 106.1 0.4 1.5e-30 105.2 0.3 1.5 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, alpha-hairpin domain Lactamase_B PF00753.22 gi|257388586|ref|YP_003178359.1| - 5.6e-24 84.8 8.2 7.9e-24 84.3 5.7 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|257388586|ref|YP_003178359.1| - 0.00024 20.7 0.5 0.00039 20.0 0.3 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain HalX PF08663.5 gi|257388587|ref|YP_003178360.1| - 2.3e-22 78.7 4.5 2.3e-22 78.7 3.1 1.8 2 0 0 2 2 2 1 HalX domain Response_reg PF00072.19 gi|257388587|ref|YP_003178360.1| - 1.4e-18 66.9 0.1 2e-18 66.4 0.1 1.2 1 0 0 1 1 1 1 Response regulator receiver domain HALZ PF02183.13 gi|257388587|ref|YP_003178360.1| - 0.042 13.5 4.6 3.6 7.3 0.1 3.0 3 1 0 3 3 3 0 Homeobox associated leucine zipper KaiC PF06745.8 gi|257388588|ref|YP_003178361.1| - 2.7e-05 23.4 0.0 5e-05 22.5 0.0 1.4 1 1 0 1 1 1 1 KaiC AAA_19 PF13245.1 gi|257388588|ref|YP_003178361.1| - 0.076 12.7 0.0 0.16 11.7 0.0 1.6 1 0 0 1 1 1 0 Part of AAA domain FAD-oxidase_C PF02913.14 gi|257388589|ref|YP_003178362.1| - 3.4e-61 206.6 0.1 1.4e-60 204.6 0.1 2.1 2 0 0 2 2 2 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.18 gi|257388589|ref|YP_003178362.1| - 2.7e-41 140.2 1.1 7e-41 138.9 0.8 1.8 1 0 0 1 1 1 1 FAD binding domain Fer4_17 PF13534.1 gi|257388589|ref|YP_003178362.1| - 2.2e-08 34.3 3.0 4.7e-08 33.2 2.1 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain CCG PF02754.11 gi|257388589|ref|YP_003178362.1| - 2.6e-08 33.7 0.0 7.4e-05 22.6 0.0 2.8 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_8 PF13183.1 gi|257388589|ref|YP_003178362.1| - 7e-08 32.3 5.1 1.4e-07 31.4 3.6 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|257388589|ref|YP_003178362.1| - 0.00029 21.1 2.2 0.0016 18.8 0.4 2.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.1 gi|257388589|ref|YP_003178362.1| - 0.00096 19.3 3.3 0.016 15.4 0.4 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Cytokin-bind PF09265.5 gi|257388589|ref|YP_003178362.1| - 0.0038 16.4 0.1 0.006 15.7 0.1 1.2 1 0 0 1 1 1 1 Cytokinin dehydrogenase 1, FAD and cytokinin binding Fer4_21 PF14697.1 gi|257388589|ref|YP_003178362.1| - 0.0066 16.2 3.4 0.078 12.8 0.3 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|257388589|ref|YP_003178362.1| - 0.033 14.9 1.2 0.17 12.6 0.2 2.4 2 0 0 2 2 2 0 4Fe-4S double cluster binding domain Fer4_7 PF12838.2 gi|257388589|ref|YP_003178362.1| - 0.062 13.6 7.4 2.8 8.3 5.7 2.6 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|257388589|ref|YP_003178362.1| - 0.14 11.9 10.2 0.11 12.3 1.6 2.4 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4 PF00037.22 gi|257388589|ref|YP_003178362.1| - 0.3 10.7 14.8 0.061 12.9 3.0 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_2 PF12797.2 gi|257388589|ref|YP_003178362.1| - 0.49 10.4 9.0 0.61 10.1 1.6 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_15 PF13459.1 gi|257388589|ref|YP_003178362.1| - 0.61 10.6 6.5 0.18 12.3 0.2 3.0 2 0 0 2 2 2 0 4Fe-4S single cluster domain HTH_IclR PF09339.5 gi|257388590|ref|YP_003178363.1| - 0.0092 15.5 0.0 0.021 14.4 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.1 gi|257388590|ref|YP_003178363.1| - 0.047 13.0 0.0 0.087 12.2 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|257388590|ref|YP_003178363.1| - 0.048 13.3 0.0 0.1 12.2 0.0 1.5 1 0 0 1 1 1 0 MarR family NTP_transf_2 PF01909.18 gi|257388591|ref|YP_003178364.1| - 2.7e-10 40.4 0.1 4.4e-10 39.7 0.0 1.4 1 0 0 1 1 1 1 Nucleotidyltransferase domain MarR_2 PF12802.2 gi|257388591|ref|YP_003178364.1| - 3.2e-06 26.7 0.0 8.9e-06 25.2 0.0 1.8 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|257388591|ref|YP_003178364.1| - 3.9e-05 23.8 0.2 0.00015 22.0 0.0 2.1 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|257388591|ref|YP_003178364.1| - 0.00035 20.3 0.0 0.00095 18.9 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|257388591|ref|YP_003178364.1| - 0.013 15.1 0.0 0.035 13.8 0.0 1.7 2 0 0 2 2 2 0 MarR family Rrf2 PF02082.15 gi|257388591|ref|YP_003178364.1| - 0.016 15.3 0.0 0.029 14.4 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator HTH_5 PF01022.15 gi|257388591|ref|YP_003178364.1| - 0.019 14.6 0.0 0.034 13.8 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|257388591|ref|YP_003178364.1| - 0.068 12.8 0.0 0.14 11.8 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_34 PF13601.1 gi|257388591|ref|YP_003178364.1| - 0.071 13.1 0.0 0.22 11.6 0.0 1.8 2 0 0 2 2 2 0 Winged helix DNA-binding domain Adenyl_cycl_N PF12633.2 gi|257388591|ref|YP_003178364.1| - 0.11 11.9 0.0 0.17 11.3 0.0 1.3 1 0 0 1 1 1 0 Adenylate cyclase NT domain DUF1495 PF07381.6 gi|257388591|ref|YP_003178364.1| - 0.13 11.9 0.0 0.55 9.9 0.0 2.0 2 0 0 2 2 2 0 Winged helix DNA-binding domain (DUF1495) HEPN PF05168.9 gi|257388592|ref|YP_003178365.1| - 0.021 14.7 0.0 0.029 14.2 0.0 1.2 1 0 0 1 1 1 0 HEPN domain DUF2048 PF09752.4 gi|257388592|ref|YP_003178365.1| - 0.14 11.0 0.0 0.2 10.4 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2048) DUF217 PF02697.9 gi|257388596|ref|YP_003178369.1| - 2.5e-10 40.4 1.0 3.1e-10 40.1 0.7 1.3 1 1 0 1 1 1 1 Uncharacterized ACR, COG1753 ESX-1_EspG PF14011.1 gi|257388596|ref|YP_003178369.1| - 0.07 12.3 1.2 0.081 12.1 0.9 1.1 1 0 0 1 1 1 0 EspG family Imm41 PF15583.1 gi|257388596|ref|YP_003178369.1| - 0.091 12.5 0.1 0.11 12.2 0.1 1.2 1 1 0 1 1 1 0 Immunity protein 41 PIN PF01850.16 gi|257388597|ref|YP_003178370.1| - 2.3e-16 60.2 0.0 2.6e-16 60.0 0.0 1.0 1 0 0 1 1 1 1 PIN domain DAO PF01266.19 gi|257388598|ref|YP_003178371.1| - 1.7e-10 40.3 4.0 0.00017 20.6 0.6 2.5 1 1 1 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|257388598|ref|YP_003178371.1| - 1.8e-08 34.5 1.4 1.1e-07 31.9 0.3 2.4 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|257388598|ref|YP_003178371.1| - 3.7e-08 32.8 1.8 4.3e-05 22.7 0.4 2.2 2 0 0 2 2 2 2 FAD binding domain Trp_halogenase PF04820.9 gi|257388598|ref|YP_003178371.1| - 2.3e-07 29.8 1.0 1.4e-05 23.9 0.0 2.1 2 0 0 2 2 2 1 Tryptophan halogenase HI0933_like PF03486.9 gi|257388598|ref|YP_003178371.1| - 3.9e-05 22.3 3.1 0.029 12.8 1.8 2.2 2 0 0 2 2 2 2 HI0933-like protein FAD_binding_2 PF00890.19 gi|257388598|ref|YP_003178371.1| - 0.00021 20.2 3.9 0.00041 19.3 2.7 1.4 1 0 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.2 gi|257388598|ref|YP_003178371.1| - 0.00052 19.2 6.5 0.0011 18.0 4.0 2.0 1 1 1 2 2 2 1 FAD dependent oxidoreductase NAD_binding_9 PF13454.1 gi|257388598|ref|YP_003178371.1| - 0.00068 19.4 2.6 0.054 13.2 0.0 2.4 2 0 0 2 2 2 1 FAD-NAD(P)-binding Thi4 PF01946.12 gi|257388598|ref|YP_003178371.1| - 0.0011 18.0 0.6 0.0023 17.0 0.2 1.6 2 0 0 2 2 2 1 Thi4 family NAD_binding_8 PF13450.1 gi|257388598|ref|YP_003178371.1| - 0.0049 16.8 0.5 0.015 15.2 0.3 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.22 gi|257388598|ref|YP_003178371.1| - 0.0092 16.3 1.0 3.4 8.1 0.7 2.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|257388598|ref|YP_003178371.1| - 0.01 14.6 1.8 0.045 12.6 0.7 1.9 2 0 0 2 2 2 0 Glucose inhibited division protein A CPSase_L_chain PF00289.17 gi|257388598|ref|YP_003178371.1| - 0.012 15.7 0.0 2.4 8.2 0.0 2.9 2 1 1 3 3 3 0 Carbamoyl-phosphate synthase L chain, N-terminal domain Lycopene_cycl PF05834.7 gi|257388598|ref|YP_003178371.1| - 0.012 14.5 0.2 1.5 7.6 0.4 2.4 2 0 0 2 2 2 0 Lycopene cyclase protein Pyr_redox_3 PF13738.1 gi|257388598|ref|YP_003178371.1| - 0.028 14.4 1.7 10 6.0 0.0 2.8 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.1 gi|257388598|ref|YP_003178371.1| - 0.11 12.8 0.0 0.37 11.0 0.0 1.9 2 0 0 2 2 2 0 Putative NAD(P)-binding Response_reg PF00072.19 gi|257388599|ref|YP_003178372.1| - 1.1e-16 60.7 0.4 1.8e-16 60.1 0.3 1.3 1 0 0 1 1 1 1 Response regulator receiver domain HalX PF08663.5 gi|257388599|ref|YP_003178372.1| - 7.8e-11 41.8 2.1 1.7e-10 40.7 1.5 1.6 1 0 0 1 1 1 1 HalX domain DUF2857 PF11198.3 gi|257388599|ref|YP_003178372.1| - 0.0085 15.6 0.0 0.013 15.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2857) DUF1579 PF07617.6 gi|257388599|ref|YP_003178372.1| - 0.095 12.3 0.0 0.32 10.6 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1579) 2-Hacid_dh_C PF02826.14 gi|257388600|ref|YP_003178373.1| - 1.8e-51 173.8 0.0 2.5e-51 173.3 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.25 gi|257388600|ref|YP_003178373.1| - 1.5e-12 47.1 0.0 1.9e-12 46.7 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.10 gi|257388600|ref|YP_003178373.1| - 6.3e-06 26.1 0.2 1.2e-05 25.1 0.0 1.5 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|257388600|ref|YP_003178373.1| - 0.00022 21.5 0.1 0.00087 19.6 0.0 2.0 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.7 gi|257388600|ref|YP_003178373.1| - 0.0029 17.0 0.1 0.016 14.6 0.0 2.0 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, catalytic domain ThiF PF00899.16 gi|257388600|ref|YP_003178373.1| - 0.062 13.1 0.9 0.062 13.1 0.6 1.7 2 0 0 2 2 2 0 ThiF family NAD_Gly3P_dh_N PF01210.18 gi|257388600|ref|YP_003178373.1| - 0.081 12.6 0.8 13 5.4 0.0 3.1 2 1 1 3 3 3 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Semialdhyde_dh PF01118.19 gi|257388603|ref|YP_003178376.1| - 4e-34 117.4 0.0 7.1e-34 116.7 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.13 gi|257388603|ref|YP_003178376.1| - 1.5e-32 112.9 0.0 2.3e-32 112.3 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain DapB_N PF01113.15 gi|257388603|ref|YP_003178376.1| - 1.7e-05 24.7 0.0 4.9e-05 23.2 0.0 1.8 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus DXP_reductoisom PF02670.11 gi|257388603|ref|YP_003178376.1| - 0.00061 20.3 0.0 0.0014 19.1 0.0 1.6 1 0 0 1 1 1 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase GFO_IDH_MocA PF01408.17 gi|257388603|ref|YP_003178376.1| - 0.0028 18.1 0.0 0.0051 17.3 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold Saccharop_dh PF03435.13 gi|257388603|ref|YP_003178376.1| - 0.0068 15.4 0.1 0.013 14.5 0.0 1.5 2 0 0 2 2 2 1 Saccharopine dehydrogenase Gp_dh_C PF02800.15 gi|257388603|ref|YP_003178376.1| - 0.084 12.3 0.0 1.8 7.9 0.0 2.4 3 0 0 3 3 3 0 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DUF2782 PF11191.3 gi|257388604|ref|YP_003178377.1| - 0.12 12.3 0.2 0.31 11.0 0.1 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF2782) tRNA-synt_1b PF00579.20 gi|257388605|ref|YP_003178378.1| - 1.7e-54 184.9 0.0 2e-54 184.7 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) Methyltransf_11 PF08241.7 gi|257388606|ref|YP_003178379.1| - 1.8e-22 79.6 0.1 4.1e-22 78.4 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|257388606|ref|YP_003178379.1| - 8.7e-15 55.2 0.4 1.6e-14 54.4 0.3 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|257388606|ref|YP_003178379.1| - 3.6e-13 49.8 0.1 8.6e-13 48.6 0.0 1.7 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|257388606|ref|YP_003178379.1| - 1.1e-12 47.8 0.0 1.4e-12 47.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|257388606|ref|YP_003178379.1| - 2.2e-12 47.2 0.1 5.3e-12 45.9 0.1 1.6 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|257388606|ref|YP_003178379.1| - 2.9e-10 40.0 0.0 3.5e-10 39.8 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|257388606|ref|YP_003178379.1| - 2.2e-09 36.7 0.0 2.9e-09 36.3 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_26 PF13659.1 gi|257388606|ref|YP_003178379.1| - 5.8e-09 36.0 3.2 9.7e-09 35.2 2.2 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.10 gi|257388606|ref|YP_003178379.1| - 3.6e-06 26.7 0.0 5.4e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 Hypothetical methyltransferase NodS PF05401.6 gi|257388606|ref|YP_003178379.1| - 3.3e-05 23.3 0.0 4.2e-05 23.0 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_9 PF08003.6 gi|257388606|ref|YP_003178379.1| - 0.00041 19.1 0.0 0.00049 18.8 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) CMAS PF02353.15 gi|257388606|ref|YP_003178379.1| - 0.0016 17.5 0.0 0.0022 17.1 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MTS PF05175.9 gi|257388606|ref|YP_003178379.1| - 0.0027 17.0 0.0 0.0037 16.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain RrnaAD PF00398.15 gi|257388606|ref|YP_003178379.1| - 0.0039 16.2 0.0 0.0051 15.8 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase MetW PF07021.7 gi|257388606|ref|YP_003178379.1| - 0.015 14.6 0.0 0.019 14.3 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW PCMT PF01135.14 gi|257388606|ref|YP_003178379.1| - 0.025 14.1 0.0 0.045 13.2 0.0 1.4 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) TPMT PF05724.6 gi|257388606|ref|YP_003178379.1| - 0.032 13.6 0.0 0.048 13.0 0.0 1.4 1 1 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) TehB PF03848.9 gi|257388606|ref|YP_003178379.1| - 0.041 13.0 0.0 0.058 12.5 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB Methyltransf_4 PF02390.12 gi|257388606|ref|YP_003178379.1| - 0.044 12.8 0.0 0.39 9.7 0.0 2.0 2 0 0 2 2 2 0 Putative methyltransferase Methyltransf_32 PF13679.1 gi|257388606|ref|YP_003178379.1| - 0.091 12.4 0.0 0.13 11.9 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain HD PF01966.17 gi|257388608|ref|YP_003178381.1| - 2.1e-09 37.4 2.4 3.8e-09 36.5 1.6 1.5 1 0 0 1 1 1 1 HD domain Gly-zipper_Omp PF13488.1 gi|257388609|ref|YP_003178382.1| - 5.9e-06 25.8 9.4 8e-06 25.3 6.5 1.2 1 0 0 1 1 1 1 Glycine zipper Rick_17kDa_Anti PF05433.10 gi|257388609|ref|YP_003178382.1| - 7.2e-06 25.5 11.0 8.8e-06 25.2 7.6 1.2 1 0 0 1 1 1 1 Glycine zipper 2TM domain Gly-zipper_OmpA PF13436.1 gi|257388609|ref|YP_003178382.1| - 3.1e-05 23.5 4.3 3.6e-05 23.3 3.0 1.1 1 0 0 1 1 1 1 Glycine-zipper containing OmpA-like membrane domain DUF3482 PF11981.3 gi|257388609|ref|YP_003178382.1| - 0.00063 19.0 2.4 0.00074 18.8 1.7 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF3482) Gly-zipper_YMGG PF13441.1 gi|257388609|ref|YP_003178382.1| - 0.0018 17.7 17.5 0.0047 16.4 12.1 1.6 1 1 1 2 2 2 2 YMGG-like Gly-zipper TraT PF05818.7 gi|257388609|ref|YP_003178382.1| - 0.0061 16.0 0.6 0.0062 15.9 0.4 1.1 1 0 0 1 1 1 1 Enterobacterial TraT complement resistance protein DUF937 PF06078.6 gi|257388609|ref|YP_003178382.1| - 0.017 15.3 0.6 0.021 15.0 0.4 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF937) DUF456 PF04306.8 gi|257388609|ref|YP_003178382.1| - 0.033 14.2 0.3 0.036 14.0 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF456) Bacteriocin_IIc PF10439.4 gi|257388609|ref|YP_003178382.1| - 0.04 14.0 5.9 0.057 13.5 4.1 1.2 1 0 0 1 1 1 0 Bacteriocin class II with double-glycine leader peptide DUF4514 PF14986.1 gi|257388609|ref|YP_003178382.1| - 2.5 7.9 7.2 0.38 10.5 1.5 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4514) SNF PF00209.13 gi|257388610|ref|YP_003178383.1| - 1.6e-54 185.2 31.2 7.9e-32 110.4 10.4 2.0 2 0 0 2 2 2 2 Sodium:neurotransmitter symporter family UDG PF03167.14 gi|257388611|ref|YP_003178384.1| - 9.4e-08 31.6 0.0 1.1e-07 31.4 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily DAO PF01266.19 gi|257388612|ref|YP_003178385.1| - 7.4e-60 202.7 6.3 8.8e-60 202.4 4.4 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|257388612|ref|YP_003178385.1| - 3.5e-09 36.1 1.0 7.3e-09 35.1 0.7 1.5 1 1 0 1 1 1 1 FAD binding domain FAD_binding_2 PF00890.19 gi|257388612|ref|YP_003178385.1| - 0.00026 19.9 4.6 0.00066 18.6 3.2 1.7 1 1 0 1 1 1 1 FAD binding domain 3HCDH_N PF02737.13 gi|257388612|ref|YP_003178385.1| - 0.00036 20.2 1.1 0.0072 15.9 0.2 2.6 3 0 0 3 3 3 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox_2 PF07992.9 gi|257388612|ref|YP_003178385.1| - 0.00036 20.4 0.1 0.0025 17.7 0.0 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|257388612|ref|YP_003178385.1| - 0.00079 18.6 6.0 0.0037 16.4 4.2 1.8 1 1 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|257388612|ref|YP_003178385.1| - 0.0073 16.3 3.6 0.017 15.1 2.0 2.0 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.22 gi|257388612|ref|YP_003178385.1| - 0.0081 16.5 2.1 0.038 14.3 1.6 2.0 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|257388612|ref|YP_003178385.1| - 0.037 14.0 0.4 0.17 11.9 0.2 1.9 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|257388612|ref|YP_003178385.1| - 0.079 11.4 2.0 0.45 8.9 1.2 1.9 2 0 0 2 2 2 0 HI0933-like protein ApbA PF02558.11 gi|257388612|ref|YP_003178385.1| - 0.21 11.0 0.8 0.37 10.2 0.5 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NAD_binding_10 PF13460.1 gi|257388612|ref|YP_003178385.1| - 1.3 9.0 5.0 0.85 9.5 1.7 2.0 3 0 0 3 3 3 0 NADH(P)-binding Carboxyl_trans PF01039.17 gi|257388613|ref|YP_003178386.1| - 6.2e-196 651.5 0.1 7e-196 651.3 0.0 1.0 1 0 0 1 1 1 1 Carboxyl transferase domain SBP_bac_8 PF13416.1 gi|257388614|ref|YP_003178387.1| - 6.5e-13 49.0 0.0 9.3e-13 48.5 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|257388614|ref|YP_003178387.1| - 4.3e-06 26.6 0.0 6.5e-06 26.0 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|257388614|ref|YP_003178387.1| - 0.014 15.0 0.0 4 7.0 0.0 2.4 2 0 0 2 2 2 0 Bacterial extracellular solute-binding protein DUF2026 PF09641.5 gi|257388614|ref|YP_003178387.1| - 0.054 12.8 0.2 0.091 12.1 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2026) CPSase_L_D2 PF02786.12 gi|257388615|ref|YP_003178388.1| - 4.2e-69 232.0 0.0 9.2e-69 230.9 0.0 1.6 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_chain PF00289.17 gi|257388615|ref|YP_003178388.1| - 2.2e-42 143.6 0.1 4.2e-42 142.7 0.1 1.5 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, N-terminal domain Biotin_carb_C PF02785.14 gi|257388615|ref|YP_003178388.1| - 2.5e-34 117.4 0.0 6.2e-34 116.2 0.0 1.7 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain Biotin_lipoyl PF00364.17 gi|257388615|ref|YP_003178388.1| - 1.3e-18 66.4 5.9 3.7e-18 64.9 4.1 1.8 1 0 0 1 1 1 1 Biotin-requiring enzyme ATP-grasp_4 PF13535.1 gi|257388615|ref|YP_003178388.1| - 1.7e-12 47.4 0.2 5.4e-12 45.8 0.1 1.8 1 1 0 1 1 1 1 ATP-grasp domain Biotin_lipoyl_2 PF13533.1 gi|257388615|ref|YP_003178388.1| - 2.9e-09 36.4 3.4 2.2e-05 24.0 0.0 3.1 2 1 1 3 3 2 2 Biotin-lipoyl like ATPgrasp_Ter PF15632.1 gi|257388615|ref|YP_003178388.1| - 2.7e-08 32.9 0.0 8.8e-07 27.9 0.0 2.1 2 0 0 2 2 2 1 ATP-grasp in the biosynthetic pathway with Ter operon HlyD PF00529.15 gi|257388615|ref|YP_003178388.1| - 4.9e-06 26.0 2.3 0.00089 18.6 0.1 2.4 1 1 1 2 2 2 2 HlyD family secretion protein ATP-grasp PF02222.17 gi|257388615|ref|YP_003178388.1| - 1.7e-05 24.2 0.0 4e-05 23.0 0.0 1.6 1 0 0 1 1 1 1 ATP-grasp domain Dala_Dala_lig_C PF07478.8 gi|257388615|ref|YP_003178388.1| - 0.00014 21.3 0.0 0.00027 20.4 0.0 1.5 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus HlyD_2 PF12700.2 gi|257388615|ref|YP_003178388.1| - 0.00028 20.1 1.0 0.0025 17.0 0.1 2.1 1 1 1 2 2 2 1 HlyD family secretion protein HlyD_3 PF13437.1 gi|257388615|ref|YP_003178388.1| - 0.00057 20.1 0.5 0.14 12.5 0.0 2.6 2 0 0 2 2 2 1 HlyD family secretion protein GARS_A PF01071.14 gi|257388615|ref|YP_003178388.1| - 0.00078 19.0 0.0 0.0015 18.1 0.0 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GCV_H PF01597.14 gi|257388615|ref|YP_003178388.1| - 0.0072 16.0 1.5 0.02 14.5 1.1 1.7 1 0 0 1 1 1 1 Glycine cleavage H-protein RimK PF08443.6 gi|257388615|ref|YP_003178388.1| - 0.023 14.1 0.0 0.72 9.2 0.0 2.4 2 0 0 2 2 2 0 RimK-like ATP-grasp domain PTS_EIIA_1 PF00358.15 gi|257388615|ref|YP_003178388.1| - 0.03 13.8 1.2 0.15 11.5 0.2 2.6 2 1 1 3 3 3 0 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NQRA PF05896.6 gi|257388615|ref|YP_003178388.1| - 0.034 13.3 1.2 0.2 10.8 0.3 2.1 2 0 0 2 2 2 0 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) QRPTase_N PF02749.11 gi|257388615|ref|YP_003178388.1| - 0.11 12.3 0.7 1.2 8.9 0.1 2.7 1 1 1 2 2 2 0 Quinolinate phosphoribosyl transferase, N-terminal domain YqfD PF06898.6 gi|257388615|ref|YP_003178388.1| - 0.17 10.5 0.4 0.34 9.5 0.3 1.4 1 0 0 1 1 1 0 Putative stage IV sporulation protein YqfD BPL_LplA_LipB PF03099.14 gi|257388616|ref|YP_003178389.1| - 8e-20 71.1 0.0 1.1e-19 70.6 0.0 1.2 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family BPL_C PF02237.12 gi|257388616|ref|YP_003178389.1| - 1.1e-11 44.2 0.1 2.1e-11 43.3 0.1 1.5 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain HTH_11 PF08279.7 gi|257388616|ref|YP_003178389.1| - 3.6e-11 42.5 0.0 8.6e-11 41.3 0.0 1.7 2 0 0 2 2 2 1 HTH domain HTH_20 PF12840.2 gi|257388616|ref|YP_003178389.1| - 0.00067 19.4 0.2 0.0022 17.7 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|257388616|ref|YP_003178389.1| - 0.0023 17.2 0.0 0.0066 15.8 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|257388616|ref|YP_003178389.1| - 0.005 16.4 0.0 0.0089 15.6 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|257388616|ref|YP_003178389.1| - 0.013 15.1 0.1 0.04 13.5 0.0 1.9 2 0 0 2 2 2 0 MarR family DUF2642 PF10842.3 gi|257388616|ref|YP_003178389.1| - 0.08 12.4 0.0 0.16 11.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2642) Fe_dep_repress PF01325.14 gi|257388616|ref|YP_003178389.1| - 0.16 11.9 0.0 0.28 11.1 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_1 PF00126.22 gi|257388616|ref|YP_003178389.1| - 0.49 10.1 2.6 1 9.1 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_AsnC-type PF13404.1 gi|257388616|ref|YP_003178389.1| - 0.51 9.9 0.1 0.51 9.9 0.0 3.0 4 0 0 4 4 4 0 AsnC-type helix-turn-helix domain Usp PF00582.21 gi|257388617|ref|YP_003178390.1| - 1.7e-35 122.2 1.9 2e-35 122.0 1.3 1.0 1 0 0 1 1 1 1 Universal stress protein family Amidohydro_1 PF01979.15 gi|257388618|ref|YP_003178391.1| - 3.2e-25 89.4 1.4 2.2e-17 63.7 0.2 2.1 1 1 1 2 2 2 2 Amidohydrolase family Amidohydro_4 PF13147.1 gi|257388618|ref|YP_003178391.1| - 2.2e-08 34.4 11.3 8.8e-08 32.5 7.9 1.9 1 1 0 1 1 1 1 Amidohydrolase Amidohydro_5 PF13594.1 gi|257388618|ref|YP_003178391.1| - 3.3e-07 30.0 0.0 6.9e-07 28.9 0.0 1.6 1 0 0 1 1 1 1 Amidohydrolase A_deaminase PF00962.17 gi|257388618|ref|YP_003178391.1| - 0.00028 19.8 0.0 0.00046 19.2 0.0 1.3 1 0 0 1 1 1 1 Adenosine/AMP deaminase Amidohydro_3 PF07969.6 gi|257388618|ref|YP_003178391.1| - 0.011 14.9 0.9 0.011 14.9 0.6 2.7 1 1 2 3 3 3 0 Amidohydrolase family HD PF01966.17 gi|257388619|ref|YP_003178392.1| - 1.4e-09 38.0 5.8 3.3e-09 36.7 4.0 1.7 1 0 0 1 1 1 1 HD domain DSPc PF00782.15 gi|257388620|ref|YP_003178393.1| - 7.5e-10 38.5 0.0 9e-10 38.2 0.0 1.1 1 0 0 1 1 1 1 Dual specificity phosphatase, catalytic domain Y_phosphatase PF00102.22 gi|257388620|ref|YP_003178393.1| - 3.2e-06 26.6 0.0 3.5e-06 26.5 0.0 1.2 1 0 0 1 1 1 1 Protein-tyrosine phosphatase Y_phosphatase3 PF13350.1 gi|257388620|ref|YP_003178393.1| - 0.00069 19.9 0.0 0.0011 19.1 0.0 1.3 1 1 0 1 1 1 1 Tyrosine phosphatase family PTPlike_phytase PF14566.1 gi|257388620|ref|YP_003178393.1| - 0.0062 16.5 0.0 0.0087 16.1 0.0 1.2 1 0 0 1 1 1 1 Inositol hexakisphosphate CDKN3 PF05706.7 gi|257388620|ref|YP_003178393.1| - 0.03 13.7 0.0 0.037 13.4 0.0 1.2 1 0 0 1 1 1 0 Cyclin-dependent kinase inhibitor 3 (CDKN3) UPF0052 PF01933.13 gi|257388621|ref|YP_003178394.1| - 2.2e-42 145.4 0.0 3.3e-42 144.8 0.0 1.2 1 0 0 1 1 1 1 Uncharacterised protein family UPF0052 HCBP_related PF06594.6 gi|257388621|ref|YP_003178394.1| - 0.47 10.1 3.4 1.4 8.6 0.0 2.8 3 0 0 3 3 3 0 Haemolysin-type calcium binding protein related domain Dus PF01207.12 gi|257388622|ref|YP_003178395.1| - 2.7e-10 39.5 2.3 2e-09 36.7 1.6 1.9 1 1 0 1 1 1 1 Dihydrouridine synthase (Dus) Arg_repressor_C PF02863.13 gi|257388622|ref|YP_003178395.1| - 0.013 14.9 0.0 0.026 13.9 0.0 1.5 1 0 0 1 1 1 0 Arginine repressor, C-terminal domain His_biosynth PF00977.16 gi|257388622|ref|YP_003178395.1| - 0.021 14.0 0.1 0.045 13.0 0.0 1.5 1 1 0 1 1 1 0 Histidine biosynthesis protein Radical_SAM PF04055.16 gi|257388622|ref|YP_003178395.1| - 0.027 14.6 0.2 1 9.5 0.1 2.4 1 1 0 1 1 1 0 Radical SAM superfamily Ribul_P_3_epim PF00834.14 gi|257388622|ref|YP_003178395.1| - 0.036 13.1 0.2 0.095 11.7 0.1 1.7 1 1 0 1 1 1 0 Ribulose-phosphate 3 epimerase family PcrB PF01884.12 gi|257388622|ref|YP_003178395.1| - 0.074 12.2 0.1 0.17 11.0 0.0 1.6 1 1 0 1 1 1 0 PcrB family NanE PF04131.9 gi|257388622|ref|YP_003178395.1| - 0.077 11.9 0.1 0.4 9.6 0.0 1.9 1 1 1 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase NmrA PF05368.8 gi|257388622|ref|YP_003178395.1| - 0.16 11.2 0.4 0.22 10.7 0.3 1.2 1 0 0 1 1 1 0 NmrA-like family CitG PF01874.11 gi|257388623|ref|YP_003178396.1| - 1.3e-66 224.6 2.7 1.5e-66 224.4 1.8 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase DUF447 PF04289.7 gi|257388624|ref|YP_003178397.1| - 4.4e-43 146.8 0.1 5e-43 146.7 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF447) Ribosomal_S17e PF00833.13 gi|257388625|ref|YP_003178398.1| - 4e-14 52.4 0.0 4.6e-14 52.2 0.0 1.0 1 0 0 1 1 1 1 Ribosomal S17 zf-ribbon_3 PF13248.1 gi|257388626|ref|YP_003178399.1| - 2.9e-06 26.3 0.6 4e-06 25.8 0.4 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|257388626|ref|YP_003178399.1| - 3.7e-05 23.4 0.2 5.2e-05 22.9 0.1 1.2 1 0 0 1 1 1 1 Double zinc ribbon TM2 PF05154.11 gi|257388626|ref|YP_003178399.1| - 0.00028 21.0 0.5 0.00046 20.3 0.4 1.3 1 0 0 1 1 1 1 TM2 domain zinc_ribbon_2 PF13240.1 gi|257388626|ref|YP_003178399.1| - 0.00044 19.6 1.1 0.00062 19.1 0.8 1.3 1 0 0 1 1 1 1 zinc-ribbon domain Wzy_C PF04932.10 gi|257388626|ref|YP_003178399.1| - 0.028 14.2 1.4 0.05 13.3 1.0 1.4 1 1 0 1 1 1 0 O-Antigen ligase UPF0547 PF10571.4 gi|257388626|ref|YP_003178399.1| - 0.033 13.8 2.2 0.059 13.0 1.5 1.3 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 Sgf11 PF08209.6 gi|257388626|ref|YP_003178399.1| - 0.033 13.4 0.0 0.05 12.9 0.0 1.3 1 0 0 1 1 1 0 Sgf11 (transcriptional regulation protein) Prok-RING_1 PF14446.1 gi|257388626|ref|YP_003178399.1| - 0.071 12.8 0.7 0.11 12.1 0.5 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 Nudix_N_2 PF14803.1 gi|257388626|ref|YP_003178399.1| - 0.077 12.7 1.4 3.9 7.2 0.1 2.2 1 1 1 2 2 2 0 Nudix N-terminal Cyd_oper_YbgE PF09600.5 gi|257388626|ref|YP_003178399.1| - 0.11 12.7 0.6 0.19 11.9 0.4 1.4 1 0 0 1 1 1 0 Cyd operon protein YbgE (Cyd_oper_YbgE) zinc-ribbons_6 PF07191.7 gi|257388626|ref|YP_003178399.1| - 0.12 12.1 0.2 0.18 11.6 0.2 1.2 1 0 0 1 1 1 0 zinc-ribbons DUF2628 PF10947.3 gi|257388626|ref|YP_003178399.1| - 0.26 11.0 3.5 0.37 10.6 2.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2628) DUF2798 PF11391.3 gi|257388626|ref|YP_003178399.1| - 0.34 10.7 2.8 0.22 11.2 0.5 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2798) DUF2474 PF10617.4 gi|257388626|ref|YP_003178399.1| - 2.2 7.9 8.1 0.25 10.9 2.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2474) DUF2116 PF09889.4 gi|257388626|ref|YP_003178399.1| - 6.8 6.5 6.5 0.53 10.1 1.1 1.7 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) ParA PF10609.4 gi|257388627|ref|YP_003178400.1| - 5.3e-34 115.9 0.1 9.8e-34 115.1 0.0 1.4 1 0 0 1 1 1 1 ParA/MinD ATPase like CbiA PF01656.18 gi|257388627|ref|YP_003178400.1| - 2.6e-18 66.1 0.0 3.6e-18 65.6 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain DUF59 PF01883.14 gi|257388627|ref|YP_003178400.1| - 3.8e-11 42.8 1.3 1e-10 41.4 0.9 1.7 1 0 0 1 1 1 1 Domain of unknown function DUF59 MipZ PF09140.6 gi|257388627|ref|YP_003178400.1| - 3e-08 33.0 0.0 4.7e-08 32.4 0.0 1.3 1 0 0 1 1 1 1 ATPase MipZ AAA_31 PF13614.1 gi|257388627|ref|YP_003178400.1| - 5.6e-08 32.8 0.0 2.1e-07 30.9 0.0 1.9 2 0 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.10 gi|257388627|ref|YP_003178400.1| - 0.00034 19.7 0.8 0.00034 19.7 0.5 1.8 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_25 PF13481.1 gi|257388627|ref|YP_003178400.1| - 0.0021 17.4 0.0 0.004 16.5 0.0 1.5 1 0 0 1 1 1 1 AAA domain VirC1 PF07015.6 gi|257388627|ref|YP_003178400.1| - 0.0024 16.9 0.0 0.004 16.2 0.0 1.3 1 0 0 1 1 1 1 VirC1 protein Fer4_NifH PF00142.13 gi|257388627|ref|YP_003178400.1| - 0.0092 15.2 0.0 0.051 12.7 0.1 1.9 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_10 PF12846.2 gi|257388627|ref|YP_003178400.1| - 0.054 12.9 0.0 0.08 12.3 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain TF_Zn_Ribbon PF08271.7 gi|257388627|ref|YP_003178400.1| - 0.11 11.7 1.0 0.21 10.9 0.1 1.8 2 0 0 2 2 2 0 TFIIB zinc-binding DUF258 PF03193.11 gi|257388627|ref|YP_003178400.1| - 0.15 11.2 0.1 0.24 10.5 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Ribosomal_S13 PF00416.17 gi|257388629|ref|YP_003178402.1| - 1e-34 119.1 1.5 1.3e-34 118.8 1.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S13/S18 FbpA PF05833.6 gi|257388629|ref|YP_003178402.1| - 0.0012 17.5 0.1 0.0012 17.5 0.1 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) HHH_5 PF14520.1 gi|257388629|ref|YP_003178402.1| - 0.056 13.6 1.3 0.096 12.8 0.9 1.7 1 1 0 1 1 1 0 Helix-hairpin-helix domain S4 PF01479.20 gi|257388630|ref|YP_003178403.1| - 5.7e-13 48.0 0.4 3.2e-12 45.6 0.0 2.2 2 0 0 2 2 2 1 S4 domain Ribosomal_S4 PF00163.14 gi|257388630|ref|YP_003178403.1| - 2.4e-06 27.8 0.2 3.6e-06 27.2 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein S4/S9 N-terminal domain Ribosomal_S11 PF00411.14 gi|257388631|ref|YP_003178404.1| - 4.5e-44 149.1 0.7 5.5e-44 148.8 0.5 1.0 1 0 0 1 1 1 1 Ribosomal protein S11 RNA_pol_A_bac PF01000.21 gi|257388632|ref|YP_003178405.1| - 7.5e-20 71.1 0.0 2.8e-19 69.3 0.0 1.8 1 1 0 1 1 1 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.19 gi|257388632|ref|YP_003178405.1| - 6.4e-12 44.4 0.0 7.9e-12 44.1 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Ribosomal_L21e PF01157.13 gi|257388632|ref|YP_003178405.1| - 0.039 13.7 0.0 1.8 8.3 0.0 2.4 2 0 0 2 2 2 0 Ribosomal protein L21e Ribosomal_L18e PF00828.14 gi|257388633|ref|YP_003178406.1| - 4.7e-13 49.6 0.1 5.7e-13 49.3 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L18e/L15 BPS PF08947.5 gi|257388633|ref|YP_003178406.1| - 0.0063 16.1 0.1 0.014 14.9 0.0 1.6 1 0 0 1 1 1 1 BPS (Between PH and SH2) Ribosomal_L13 PF00572.13 gi|257388634|ref|YP_003178407.1| - 6.3e-21 74.7 0.0 8.4e-21 74.3 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L13 Ribosomal_S9 PF00380.14 gi|257388635|ref|YP_003178408.1| - 9.6e-35 119.4 0.1 1.1e-34 119.2 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 Cupin_6 PF12852.2 gi|257388635|ref|YP_003178408.1| - 0.01 15.4 0.0 0.012 15.2 0.0 1.1 1 0 0 1 1 1 0 Cupin RNA_pol_N PF01194.12 gi|257388636|ref|YP_003178409.1| - 5.5e-28 96.7 0.2 6e-28 96.6 0.2 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit Chordopox_RPO7 PF05864.7 gi|257388636|ref|YP_003178409.1| - 0.33 11.0 1.4 1.1 9.3 1.0 1.9 1 1 0 1 1 1 0 Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7) RNA_pol_Rpb6 PF01192.17 gi|257388637|ref|YP_003178410.1| - 3.8e-18 64.9 0.1 4.4e-18 64.7 0.1 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb6 Enolase_C PF00113.17 gi|257388638|ref|YP_003178411.1| - 4.6e-75 252.3 1.4 7.2e-75 251.6 1.0 1.3 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.11 gi|257388638|ref|YP_003178411.1| - 1.2e-36 125.6 0.3 2.4e-36 124.5 0.2 1.6 1 0 0 1 1 1 1 Enolase, N-terminal domain MAAL_C PF07476.6 gi|257388638|ref|YP_003178411.1| - 1.4e-06 27.4 0.4 2.6e-06 26.5 0.3 1.4 1 0 0 1 1 1 1 Methylaspartate ammonia-lyase C-terminus MR_MLE_C PF13378.1 gi|257388638|ref|YP_003178411.1| - 9.9e-05 22.2 0.4 0.00032 20.6 0.0 2.0 2 0 0 2 2 2 1 Enolase C-terminal domain-like MR_MLE PF01188.16 gi|257388638|ref|YP_003178411.1| - 0.0025 18.3 0.4 0.0073 16.8 0.3 1.9 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain SUKH-4 PF14435.1 gi|257388638|ref|YP_003178411.1| - 0.01 15.5 0.1 0.017 14.8 0.1 1.3 1 0 0 1 1 1 0 SUKH-4 immunity protein Ribosomal_S2 PF00318.15 gi|257388639|ref|YP_003178412.1| - 5.8e-36 123.7 0.0 3.1e-18 65.7 0.2 2.1 1 1 1 2 2 2 2 Ribosomal protein S2 Avirulence PF03377.8 gi|257388639|ref|YP_003178412.1| - 0.13 11.0 0.0 0.19 10.4 0.0 1.2 1 0 0 1 1 1 0 Xanthomonas avirulence protein, Avr/PthA Gly-zipper_Omp PF13488.1 gi|257388640|ref|YP_003178413.1| - 0.002 17.7 2.9 0.002 17.7 2.0 4.1 4 2 0 4 4 4 2 Glycine zipper p450 PF00067.17 gi|257388642|ref|YP_003178415.1| - 9.6e-97 324.3 0.0 1.2e-96 324.0 0.0 1.0 1 0 0 1 1 1 1 Cytochrome P450 Acetyltransf_1 PF00583.19 gi|257388643|ref|YP_003178416.1| - 1.7e-13 50.4 0.0 3.2e-13 49.5 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|257388643|ref|YP_003178416.1| - 2.6e-10 40.4 0.0 3.4e-10 40.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|257388643|ref|YP_003178416.1| - 1.1e-08 35.1 0.0 1.5e-08 34.6 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|257388643|ref|YP_003178416.1| - 7.3e-08 32.4 0.0 8.7e-08 32.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|257388643|ref|YP_003178416.1| - 3.5e-05 23.9 0.0 4.2e-05 23.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|257388643|ref|YP_003178416.1| - 0.00053 19.8 0.0 0.0046 16.8 0.0 1.9 1 1 1 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|257388643|ref|YP_003178416.1| - 0.0021 17.9 0.0 0.0049 16.7 0.0 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|257388643|ref|YP_003178416.1| - 0.014 15.1 0.0 0.026 14.2 0.0 1.4 1 0 0 1 1 1 0 FR47-like protein Acetyltransf_CG PF14542.1 gi|257388643|ref|YP_003178416.1| - 0.037 13.9 0.0 0.062 13.2 0.0 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase GHMP_kinases_N PF00288.21 gi|257388644|ref|YP_003178417.1| - 6.6e-14 51.7 1.7 8.2e-14 51.4 0.4 1.7 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.8 gi|257388644|ref|YP_003178417.1| - 8.7e-14 51.4 4.3 1.6e-13 50.6 0.4 2.5 2 1 0 2 2 2 1 GHMP kinases C terminal GalKase_gal_bdg PF10509.4 gi|257388644|ref|YP_003178417.1| - 7e-05 22.0 0.0 0.00039 19.6 0.0 2.1 2 0 0 2 2 2 1 Galactokinase galactose-binding signature AA_kinase PF00696.23 gi|257388645|ref|YP_003178418.1| - 1.6e-33 116.2 5.7 1.8e-33 116.0 4.0 1.0 1 0 0 1 1 1 1 Amino acid kinase family Glyco_hydro_3_C PF01915.17 gi|257388645|ref|YP_003178418.1| - 0.00041 19.9 0.8 0.00082 18.9 0.5 1.5 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 C-terminal domain DUF3561 PF12084.3 gi|257388645|ref|YP_003178418.1| - 0.07 12.9 0.0 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3561) Lactamase_B PF00753.22 gi|257388647|ref|YP_003178420.1| - 6e-14 52.1 1.4 1.4e-13 50.9 1.0 1.7 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|257388647|ref|YP_003178420.1| - 2.7e-07 30.3 0.1 3.9e-06 26.5 0.1 2.1 2 0 0 2 2 2 1 Beta-lactamase superfamily domain RMMBL PF07521.7 gi|257388647|ref|YP_003178420.1| - 0.0033 17.2 0.6 0.0099 15.6 0.1 2.1 2 0 0 2 2 2 1 RNA-metabolising metallo-beta-lactamase polyprenyl_synt PF00348.12 gi|257388648|ref|YP_003178421.1| - 4.5e-58 196.1 1.1 5.8e-58 195.7 0.7 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase tRNA-synt_1c PF00749.16 gi|257388649|ref|YP_003178422.1| - 3.4e-53 180.3 0.0 4.2e-53 180.0 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.13 gi|257388649|ref|YP_003178422.1| - 6.2e-13 48.7 0.0 4.2e-12 46.0 0.0 2.1 1 1 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain tRNA-synt_1e PF01406.14 gi|257388649|ref|YP_003178422.1| - 0.12 11.4 0.0 0.22 10.5 0.0 1.3 1 0 0 1 1 1 0 tRNA synthetases class I (C) catalytic domain DZR PF12773.2 gi|257388650|ref|YP_003178423.1| - 0.0056 16.4 3.1 0.0074 16.0 2.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon RNHCP PF12647.2 gi|257388650|ref|YP_003178423.1| - 0.042 13.6 1.9 0.046 13.5 1.3 1.2 1 0 0 1 1 1 0 RNHCP domain UPF0547 PF10571.4 gi|257388650|ref|YP_003178423.1| - 0.049 13.3 2.1 0.15 11.8 1.5 1.8 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 zinc_ribbon_2 PF13240.1 gi|257388650|ref|YP_003178423.1| - 0.056 12.9 2.5 4.1 7.0 0.0 2.4 2 0 0 2 2 2 0 zinc-ribbon domain DUF2256 PF10013.4 gi|257388650|ref|YP_003178423.1| - 0.082 12.6 2.7 0.22 11.2 0.0 2.3 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2256) Nudix_N_2 PF14803.1 gi|257388650|ref|YP_003178423.1| - 0.11 12.1 5.6 0.21 11.3 3.9 1.4 1 0 0 1 1 1 0 Nudix N-terminal ADK_lid PF05191.9 gi|257388650|ref|YP_003178423.1| - 0.18 11.5 0.3 0.18 11.5 0.2 2.6 3 0 0 3 3 3 0 Adenylate kinase, active site lid zf-ribbon_3 PF13248.1 gi|257388650|ref|YP_003178423.1| - 1.3 8.3 5.5 7.4 5.9 3.1 2.2 1 1 1 2 2 2 0 zinc-ribbon domain zf-IS66 PF13005.2 gi|257388650|ref|YP_003178423.1| - 1.7 8.6 6.5 1 9.3 0.3 2.2 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 zf-C2HC_2 PF13913.1 gi|257388650|ref|YP_003178423.1| - 3.3 7.5 6.3 8.6 6.1 0.3 2.4 2 0 0 2 2 2 0 zinc-finger of a C2HC-type Zn_Tnp_IS1595 PF12760.2 gi|257388650|ref|YP_003178423.1| - 9.6 6.1 7.3 18 5.2 4.3 2.0 1 1 0 1 1 1 0 Transposase zinc-ribbon domain Abhydrolase_3 PF07859.8 gi|257388651|ref|YP_003178424.1| - 8.7e-25 87.5 3.3 2.1e-24 86.2 2.3 1.6 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_5 PF12695.2 gi|257388651|ref|YP_003178424.1| - 3.8e-21 75.3 1.5 5.3e-21 74.8 1.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S9 PF00326.16 gi|257388651|ref|YP_003178424.1| - 1.5e-13 50.4 0.3 5.1e-12 45.4 0.2 2.7 1 1 0 1 1 1 1 Prolyl oligopeptidase family COesterase PF00135.23 gi|257388651|ref|YP_003178424.1| - 1.4e-12 47.0 0.0 2.7e-12 46.1 0.0 1.3 1 1 0 1 1 1 1 Carboxylesterase family Abhydrolase_6 PF12697.2 gi|257388651|ref|YP_003178424.1| - 5.4e-12 46.0 7.9 3.4e-11 43.4 5.5 1.9 1 1 0 1 1 1 1 Alpha/beta hydrolase family DLH PF01738.13 gi|257388651|ref|YP_003178424.1| - 4.9e-07 29.2 1.0 0.015 14.6 0.0 2.9 2 1 0 2 2 2 2 Dienelactone hydrolase family Esterase_phd PF10503.4 gi|257388651|ref|YP_003178424.1| - 1.6e-05 24.3 3.9 0.0026 17.0 2.7 3.0 1 1 0 1 1 1 1 Esterase PHB depolymerase Abhydrolase_4 PF08386.5 gi|257388651|ref|YP_003178424.1| - 7.1e-05 22.6 0.0 0.00013 21.8 0.0 1.4 1 0 0 1 1 1 1 TAP-like protein Hydrolase_4 PF12146.3 gi|257388651|ref|YP_003178424.1| - 0.00011 21.9 0.0 0.00093 19.0 0.0 2.3 2 0 0 2 2 2 1 Putative lysophospholipase Abhydrolase_2 PF02230.11 gi|257388651|ref|YP_003178424.1| - 0.0011 18.5 0.0 0.37 10.2 0.0 2.7 2 1 1 3 3 3 1 Phospholipase/Carboxylesterase LIP PF03583.9 gi|257388651|ref|YP_003178424.1| - 0.011 14.9 3.4 0.3 10.2 0.0 2.1 2 0 0 2 2 2 0 Secretory lipase Chlorophyllase2 PF12740.2 gi|257388651|ref|YP_003178424.1| - 0.011 14.6 0.0 0.018 13.9 0.0 1.3 1 0 0 1 1 1 0 Chlorophyllase enzyme FSH1 PF03959.8 gi|257388651|ref|YP_003178424.1| - 0.016 14.6 0.0 0.041 13.3 0.0 1.6 1 1 0 1 1 1 0 Serine hydrolase (FSH1) UPF0227 PF05728.7 gi|257388651|ref|YP_003178424.1| - 0.02 14.5 0.0 0.029 14.0 0.0 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0227) TP_methylase PF00590.15 gi|257388651|ref|YP_003178424.1| - 0.041 13.5 0.6 0.41 10.3 0.1 2.3 3 0 0 3 3 3 0 Tetrapyrrole (Corrin/Porphyrin) Methylases Chlorophyllase PF07224.6 gi|257388651|ref|YP_003178424.1| - 0.11 11.3 0.0 0.14 10.8 0.0 1.2 1 0 0 1 1 1 0 Chlorophyllase Peptidase_S51 PF03575.12 gi|257388651|ref|YP_003178424.1| - 0.11 12.2 0.2 12 5.6 0.1 2.2 2 0 0 2 2 2 0 Peptidase family S51 Fer4 PF00037.22 gi|257388652|ref|YP_003178425.1| - 2.2e-12 46.0 14.5 8.1e-08 31.5 3.1 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|257388652|ref|YP_003178425.1| - 4e-10 39.8 5.7 5.5e-10 39.3 4.0 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.2 gi|257388652|ref|YP_003178425.1| - 6.7e-10 39.1 12.7 1.9e-08 34.5 4.7 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|257388652|ref|YP_003178425.1| - 8.5e-09 34.9 15.9 2.7e-06 27.0 4.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|257388652|ref|YP_003178425.1| - 5.5e-08 32.5 7.5 8.4e-08 31.9 5.2 1.3 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|257388652|ref|YP_003178425.1| - 9e-08 31.8 19.2 3.8e-05 23.4 6.0 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|257388652|ref|YP_003178425.1| - 2.4e-07 30.6 9.4 3.5e-06 26.9 3.7 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|257388652|ref|YP_003178425.1| - 6e-07 29.0 10.5 0.0004 20.1 1.9 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.1 gi|257388652|ref|YP_003178425.1| - 6.4e-07 29.7 2.0 0.00048 20.4 0.9 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.1 gi|257388652|ref|YP_003178425.1| - 1.9e-06 28.5 6.2 7.9e-05 23.3 0.7 2.6 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_17 PF13534.1 gi|257388652|ref|YP_003178425.1| - 1.9e-06 28.1 0.8 0.029 14.6 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|257388652|ref|YP_003178425.1| - 2.4e-05 24.2 9.2 0.00037 20.5 2.4 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_13 PF13370.1 gi|257388652|ref|YP_003178425.1| - 0.0018 18.6 15.6 0.0086 16.4 10.8 2.2 1 1 0 1 1 1 1 4Fe-4S single cluster domain Fer4_3 PF12798.2 gi|257388652|ref|YP_003178425.1| - 0.0019 18.6 12.9 0.0026 18.2 3.6 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_15 PF13459.1 gi|257388652|ref|YP_003178425.1| - 0.023 15.2 17.2 0.77 10.3 11.8 2.6 1 1 1 2 2 2 0 4Fe-4S single cluster domain ETF PF01012.16 gi|257388653|ref|YP_003178426.1| - 2.1e-31 108.8 0.1 3.9e-31 107.9 0.0 1.4 1 0 0 1 1 1 1 Electron transfer flavoprotein domain ETF_alpha PF00766.14 gi|257388654|ref|YP_003178427.1| - 2.1e-21 75.3 0.3 4e-21 74.4 0.2 1.5 1 0 0 1 1 1 1 Electron transfer flavoprotein FAD-binding domain ETF PF01012.16 gi|257388654|ref|YP_003178427.1| - 1.4e-18 67.1 0.0 2.1e-16 60.0 0.0 2.5 1 1 0 1 1 1 1 Electron transfer flavoprotein domain DAO PF01266.19 gi|257388655|ref|YP_003178428.1| - 7.2e-11 41.5 1.9 3.9e-05 22.7 0.3 2.4 2 1 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|257388655|ref|YP_003178428.1| - 4e-10 39.2 2.3 0.0002 20.5 0.0 2.4 2 1 0 2 2 2 2 FAD binding domain FAD_oxidored PF12831.2 gi|257388655|ref|YP_003178428.1| - 6.5e-06 25.4 0.5 9.4e-06 24.9 0.3 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|257388655|ref|YP_003178428.1| - 5.2e-05 23.1 1.6 0.00011 22.1 0.3 2.2 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.9 gi|257388655|ref|YP_003178428.1| - 0.00014 21.7 0.1 0.0012 18.7 0.1 2.2 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|257388655|ref|YP_003178428.1| - 0.00078 18.5 0.1 0.0018 17.4 0.0 1.6 2 0 0 2 2 2 1 Thi4 family HI0933_like PF03486.9 gi|257388655|ref|YP_003178428.1| - 0.0066 14.9 1.9 0.012 14.0 0.7 1.7 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_3 PF13738.1 gi|257388655|ref|YP_003178428.1| - 0.014 15.4 0.3 0.029 14.4 0.2 1.6 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|257388655|ref|YP_003178428.1| - 0.018 13.8 5.4 0.026 13.3 1.9 2.1 1 1 1 2 2 2 0 FAD binding domain Fer4_7 PF12838.2 gi|257388655|ref|YP_003178428.1| - 0.1 13.0 1.9 0.2 12.0 1.3 1.4 1 0 0 1 1 1 0 4Fe-4S dicluster domain Trp_halogenase PF04820.9 gi|257388655|ref|YP_003178428.1| - 0.46 9.0 1.5 1.2 7.6 0.0 2.1 2 0 0 2 2 2 0 Tryptophan halogenase GIDA PF01134.17 gi|257388655|ref|YP_003178428.1| - 2.3 7.0 4.4 1.3 7.7 1.7 1.5 2 0 0 2 2 2 0 Glucose inhibited division protein A Fer4_6 PF12837.2 gi|257388655|ref|YP_003178428.1| - 3 7.8 5.8 0.5 10.3 0.5 2.1 2 0 0 2 2 2 0 4Fe-4S binding domain TetR_C_6 PF13977.1 gi|257388656|ref|YP_003178429.1| - 0.1 12.6 4.2 1.8 8.6 0.7 2.1 1 1 1 2 2 2 0 Bacterial transcriptional repressor Acetyltransf_4 PF13420.1 gi|257388657|ref|YP_003178430.1| - 3.5e-16 59.5 0.0 5.1e-16 58.9 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|257388657|ref|YP_003178430.1| - 1.6e-12 47.2 0.0 2.7e-12 46.5 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.1 gi|257388657|ref|YP_003178430.1| - 4.1e-09 36.7 0.1 9.4e-09 35.5 0.0 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|257388657|ref|YP_003178430.1| - 1.1e-08 35.2 0.0 2e-08 34.3 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|257388657|ref|YP_003178430.1| - 2.4e-06 27.6 0.0 4.9e-06 26.6 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|257388657|ref|YP_003178430.1| - 0.0021 17.9 0.0 0.0041 17.0 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|257388657|ref|YP_003178430.1| - 0.0092 15.8 0.0 0.024 14.5 0.0 1.7 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase UBA_4 PF14555.1 gi|257388657|ref|YP_003178430.1| - 0.1 12.1 0.0 0.2 11.2 0.0 1.5 1 0 0 1 1 1 0 UBA-like domain DUF3457 PF11939.3 gi|257388658|ref|YP_003178431.1| - 0.12 11.8 0.0 0.13 11.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3457) DUF456 PF04306.8 gi|257388659|ref|YP_003178432.1| - 7.1e-28 97.4 25.3 7.1e-28 97.4 17.6 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF456) Silic_transp PF03842.8 gi|257388659|ref|YP_003178432.1| - 0.38 8.7 6.6 0.53 8.2 4.6 1.2 1 0 0 1 1 1 0 Silicon transporter Tetraspannin PF00335.15 gi|257388659|ref|YP_003178432.1| - 4.6 6.4 11.5 3.4 6.8 6.9 1.5 1 1 0 1 1 1 0 Tetraspanin family TctB PF07331.6 gi|257388659|ref|YP_003178432.1| - 4.7 6.8 25.0 0.26 10.9 12.1 2.3 1 1 1 2 2 2 0 Tripartite tricarboxylate transporter TctB family GNAT_acetyltr_2 PF13718.1 gi|257388660|ref|YP_003178433.1| - 1.3e-50 171.4 0.0 8.6e-50 168.7 0.0 2.0 1 1 0 1 1 1 1 GNAT acetyltransferase 2 Helicase_RecD PF05127.9 gi|257388660|ref|YP_003178433.1| - 1.5e-49 168.0 0.0 2.5e-49 167.3 0.0 1.4 1 0 0 1 1 1 1 Helicase DUF1726 PF08351.6 gi|257388660|ref|YP_003178433.1| - 2e-21 75.4 0.0 2e-20 72.2 0.0 2.5 2 0 0 2 2 2 1 Domain of unknown function (DUF1726) tRNA_bind_2 PF13725.1 gi|257388660|ref|YP_003178433.1| - 2.7e-09 37.0 0.0 5.8e-09 35.9 0.0 1.5 1 0 0 1 1 1 1 Possible tRNA binding domain AAA_30 PF13604.1 gi|257388660|ref|YP_003178433.1| - 9.6e-09 35.0 0.1 2.7e-08 33.6 0.1 1.8 1 0 0 1 1 1 1 AAA domain Acetyltransf_7 PF13508.1 gi|257388660|ref|YP_003178433.1| - 3.4e-05 23.9 0.0 0.00016 21.7 0.0 2.2 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|257388660|ref|YP_003178433.1| - 0.0003 20.8 0.1 0.078 13.0 0.0 3.4 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|257388660|ref|YP_003178433.1| - 0.014 15.2 0.0 0.03 14.1 0.0 1.6 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|257388660|ref|YP_003178433.1| - 0.042 13.8 0.0 0.12 12.4 0.0 1.8 1 0 0 1 1 1 0 Acetyltransferase (GNAT) family Ribosomal_L7Ae PF01248.21 gi|257388661|ref|YP_003178434.1| - 7.8e-26 89.4 0.0 9.1e-26 89.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.1 gi|257388661|ref|YP_003178434.1| - 0.00025 20.7 0.1 0.00045 19.9 0.0 1.4 1 1 0 1 1 1 1 PELOTA RNA binding domain DUF1269 PF06897.7 gi|257388661|ref|YP_003178434.1| - 0.0037 17.2 1.7 0.15 12.0 0.0 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF1269) eRF1_3 PF03465.10 gi|257388661|ref|YP_003178434.1| - 0.045 14.0 0.1 0.053 13.7 0.1 1.2 1 0 0 1 1 1 0 eRF1 domain 3 PIN_3 PF13470.1 gi|257388661|ref|YP_003178434.1| - 0.091 13.4 0.4 0.11 13.2 0.3 1.3 1 0 0 1 1 1 0 PIN domain Ribosomal_S28e PF01200.13 gi|257388662|ref|YP_003178435.1| - 3.8e-29 100.2 1.6 4.3e-29 100.0 1.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S28e Ribosomal_L24e PF01246.15 gi|257388663|ref|YP_003178436.1| - 4.3e-25 87.3 0.0 7.7e-25 86.5 0.0 1.4 1 0 0 1 1 1 1 Ribosomal protein L24e zf-FCS PF06467.9 gi|257388663|ref|YP_003178436.1| - 0.024 14.2 0.7 0.034 13.8 0.5 1.2 1 0 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif Meleagrin PF08189.6 gi|257388663|ref|YP_003178436.1| - 0.048 13.1 0.1 0.08 12.4 0.0 1.3 1 0 0 1 1 1 0 Meleagrin/Cygnin family Arc_trans_TRASH PF08394.5 gi|257388663|ref|YP_003178436.1| - 0.23 11.6 1.9 0.38 10.9 1.3 1.4 1 0 0 1 1 1 0 Archaeal TRASH domain CENP-T PF15511.1 gi|257388663|ref|YP_003178436.1| - 0.46 9.6 23.3 0.48 9.6 16.2 1.0 1 0 0 1 1 1 0 Centromere kinetochore component CENP-T Cwf_Cwc_15 PF04889.7 gi|257388663|ref|YP_003178436.1| - 1 9.0 23.1 1.4 8.5 16.0 1.2 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein DUF1510 PF07423.6 gi|257388663|ref|YP_003178436.1| - 4.1 6.7 28.6 5.3 6.3 19.8 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1510) CobT PF06213.7 gi|257388663|ref|YP_003178436.1| - 4.6 6.2 33.7 5.1 6.1 23.3 1.1 1 0 0 1 1 1 0 Cobalamin biosynthesis protein CobT DUF4045 PF13254.1 gi|257388663|ref|YP_003178436.1| - 6.9 5.8 14.3 8.2 5.5 9.9 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4045) CDC27 PF09507.5 gi|257388663|ref|YP_003178436.1| - 8.9 5.4 24.7 9.2 5.3 17.1 1.0 1 0 0 1 1 1 0 DNA polymerase subunit Cdc27 NDK PF00334.14 gi|257388664|ref|YP_003178437.1| - 2.4e-58 195.7 0.0 2.7e-58 195.5 0.0 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase GST_N_3 PF13417.1 gi|257388665|ref|YP_003178438.1| - 7e-14 51.8 0.0 7.9e-14 51.6 0.0 1.0 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Glutaredoxin PF00462.19 gi|257388665|ref|YP_003178438.1| - 1.1e-13 50.9 0.0 1.4e-13 50.5 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin GST_N_2 PF13409.1 gi|257388665|ref|YP_003178438.1| - 2e-09 37.3 0.0 2.3e-09 37.1 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain DUF836 PF05768.9 gi|257388665|ref|YP_003178438.1| - 0.00052 20.2 0.1 0.00056 20.1 0.1 1.3 1 1 0 1 1 1 1 Glutaredoxin-like domain (DUF836) DSBA PF01323.15 gi|257388665|ref|YP_003178438.1| - 0.066 12.7 0.0 0.085 12.4 0.0 1.2 1 0 0 1 1 1 0 DSBA-like thioredoxin domain Tetraspannin PF00335.15 gi|257388666|ref|YP_003178439.1| - 0.74 9.0 6.1 0.15 11.2 1.7 1.6 2 0 0 2 2 2 0 Tetraspanin family Yip1 PF04893.12 gi|257388666|ref|YP_003178439.1| - 7.8 5.9 22.7 7.2 6.0 1.1 2.4 2 1 0 2 2 2 0 Yip1 domain SelR PF01641.13 gi|257388667|ref|YP_003178440.1| - 2.6e-48 162.8 0.0 3e-48 162.6 0.0 1.0 1 0 0 1 1 1 1 SelR domain Yippee-Mis18 PF03226.9 gi|257388667|ref|YP_003178440.1| - 0.0012 18.7 0.0 0.0026 17.7 0.0 1.5 1 1 0 1 1 1 1 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly DUF2296 PF10058.4 gi|257388667|ref|YP_003178440.1| - 0.023 14.4 0.1 0.49 10.1 0.0 2.2 2 0 0 2 2 2 0 Predicted integral membrane metal-binding protein (DUF2296) HECT_2 PF09814.4 gi|257388667|ref|YP_003178440.1| - 0.028 13.1 0.0 2 7.0 0.0 2.0 2 0 0 2 2 2 0 HECT-like Ubiquitin-conjugating enzyme (E2)-binding DZR PF12773.2 gi|257388667|ref|YP_003178440.1| - 0.029 14.1 0.1 0.082 12.7 0.0 1.8 1 1 0 1 1 1 0 Double zinc ribbon Zn_Tnp_IS1595 PF12760.2 gi|257388667|ref|YP_003178440.1| - 0.042 13.6 0.2 2.4 8.0 0.0 2.3 2 0 0 2 2 2 0 Transposase zinc-ribbon domain RRN7 PF11781.3 gi|257388667|ref|YP_003178440.1| - 0.44 10.1 5.3 1.4 8.5 0.0 2.8 2 1 0 2 2 2 0 RNA polymerase I-specific transcription initiation factor Rrn7 TF_Zn_Ribbon PF08271.7 gi|257388667|ref|YP_003178440.1| - 6.8 6.1 10.4 2.7 7.4 0.6 3.3 3 1 0 3 3 3 0 TFIIB zinc-binding AAA_10 PF12846.2 gi|257388668|ref|YP_003178441.1| - 1.6e-12 47.5 0.0 4.9e-07 29.4 0.0 2.1 2 0 0 2 2 2 2 AAA-like domain DUF87 PF01935.12 gi|257388668|ref|YP_003178441.1| - 4e-09 36.6 0.0 1.3e-07 31.6 0.0 2.2 1 1 0 2 2 2 1 Domain of unknown function DUF87 FtsK_SpoIIIE PF01580.13 gi|257388668|ref|YP_003178441.1| - 0.00073 19.0 0.2 0.94 8.9 0.0 2.5 2 1 0 2 2 2 2 FtsK/SpoIIIE family DUF853 PF05872.7 gi|257388668|ref|YP_003178441.1| - 0.0064 14.8 0.4 2.4 6.4 0.3 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) ABC_tran PF00005.22 gi|257388668|ref|YP_003178441.1| - 0.14 12.4 0.0 0.28 11.4 0.0 1.5 1 0 0 1 1 1 0 ABC transporter AAA_30 PF13604.1 gi|257388668|ref|YP_003178441.1| - 0.58 9.6 4.4 2.3 7.7 1.2 2.8 2 1 0 2 2 2 0 AAA domain Ribosomal_S17 PF00366.15 gi|257388669|ref|YP_003178442.1| - 0.11 12.5 0.0 0.16 12.0 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein S17 PRC PF05239.11 gi|257388670|ref|YP_003178443.1| - 5.1e-09 35.8 0.1 6.1e-09 35.6 0.1 1.0 1 0 0 1 1 1 1 PRC-barrel domain Lipoprotein_18 PF06804.6 gi|257388670|ref|YP_003178443.1| - 0.1 11.3 0.7 3.3 6.3 0.3 2.0 1 1 1 2 2 2 0 NlpB/DapX lipoprotein Acetyltransf_1 PF00583.19 gi|257388671|ref|YP_003178444.1| - 8.2e-17 61.0 0.0 1.1e-16 60.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|257388671|ref|YP_003178444.1| - 1.6e-15 57.2 0.1 1.9e-15 56.9 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|257388671|ref|YP_003178444.1| - 6.4e-12 45.4 0.0 8.6e-12 45.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|257388671|ref|YP_003178444.1| - 5e-07 29.3 0.0 7.7e-07 28.7 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.1 gi|257388671|ref|YP_003178444.1| - 1.1e-06 28.6 0.1 1.2e-06 28.4 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|257388671|ref|YP_003178444.1| - 9.8e-06 25.4 0.0 1.3e-05 25.0 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|257388671|ref|YP_003178444.1| - 0.00017 21.7 0.0 0.00019 21.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|257388671|ref|YP_003178444.1| - 0.00063 19.7 0.0 0.00075 19.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_13 PF13880.1 gi|257388671|ref|YP_003178444.1| - 0.0028 17.3 0.0 0.11 12.2 0.0 2.7 3 0 0 3 3 3 1 ESCO1/2 acetyl-transferase DUF3749 PF12568.3 gi|257388671|ref|YP_003178444.1| - 0.02 14.5 0.0 0.023 14.2 0.0 1.4 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|257388671|ref|YP_003178444.1| - 0.038 13.8 0.0 0.091 12.6 0.0 1.7 1 1 0 1 1 1 0 GCN5-related N-acetyl-transferase CBS PF00571.23 gi|257388672|ref|YP_003178445.1| - 4.6e-19 67.9 1.8 3.3e-10 39.5 0.0 2.3 2 0 0 2 2 2 2 CBS domain GGDN PF05165.7 gi|257388673|ref|YP_003178446.1| - 4.2e-89 297.8 1.6 5.5e-89 297.4 1.1 1.0 1 0 0 1 1 1 1 GGDN family CARDB PF07705.6 gi|257388675|ref|YP_003178448.1| - 3e-10 40.0 9.2 2.9e-05 24.0 0.8 2.8 3 0 0 3 3 3 2 CARDB Transglut_C PF00927.17 gi|257388675|ref|YP_003178448.1| - 0.0009 19.2 0.3 0.63 10.1 0.0 2.5 2 0 0 2 2 2 2 Transglutaminase family, C-terminal ig like domain DUF3992 PF13157.1 gi|257388675|ref|YP_003178448.1| - 5.5 7.2 8.1 0.44 10.7 1.0 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF3992) Lactonase PF10282.4 gi|257388676|ref|YP_003178449.1| - 1.2e-113 379.7 0.0 1.3e-113 379.5 0.0 1.0 1 0 0 1 1 1 1 Lactonase, 7-bladed beta-propeller SGL PF08450.7 gi|257388676|ref|YP_003178449.1| - 4.5e-05 22.9 3.3 0.017 14.4 0.2 3.7 2 1 2 4 4 4 3 SMP-30/Gluconolaconase/LRE-like region DUF2064 PF09837.4 gi|257388677|ref|YP_003178450.1| - 0.025 14.1 0.0 0.037 13.6 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2064) CBS PF00571.23 gi|257388678|ref|YP_003178451.1| - 4.1e-18 64.8 4.3 1.2e-08 34.5 0.3 2.1 2 0 0 2 2 2 2 CBS domain UDG PF03167.14 gi|257388679|ref|YP_003178452.1| - 2e-21 76.0 0.0 2.3e-21 75.8 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily DUF539 PF04400.8 gi|257388679|ref|YP_003178452.1| - 0.01 15.3 0.4 0.018 14.4 0.3 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF539) Chorismate_synt PF01264.16 gi|257388680|ref|YP_003178453.1| - 3.3e-116 387.5 0.0 1.4e-115 385.4 0.0 1.7 1 1 0 1 1 1 1 Chorismate synthase EPSP_synthase PF00275.15 gi|257388681|ref|YP_003178454.1| - 5.9e-99 331.3 0.1 6.9e-99 331.1 0.0 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Peptidase_M24 PF00557.19 gi|257388682|ref|YP_003178455.1| - 1.4e-44 152.1 2.1 1.9e-44 151.7 1.4 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|257388682|ref|YP_003178455.1| - 2.3e-06 28.1 2.2 2.2e-05 24.9 0.2 2.4 1 1 1 2 2 2 1 Creatinase/Prolidase N-terminal domain AMP_N PF05195.11 gi|257388682|ref|YP_003178455.1| - 0.011 15.1 0.0 0.55 9.6 0.0 2.4 2 0 0 2 2 2 0 Aminopeptidase P, N-terminal domain RHH_1 PF01402.16 gi|257388684|ref|YP_003178457.1| - 0.0002 21.1 0.0 0.00033 20.4 0.0 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family GvpK PF05121.7 gi|257388684|ref|YP_003178457.1| - 0.031 14.0 0.2 0.045 13.5 0.1 1.2 1 0 0 1 1 1 0 Gas vesicle protein K SHOCT PF09851.4 gi|257388684|ref|YP_003178457.1| - 0.098 12.1 0.4 0.16 11.4 0.2 1.5 1 0 0 1 1 1 0 Short C-terminal domain Y1_Tnp PF01797.11 gi|257388685|ref|YP_003178458.1| - 9.9e-37 125.4 0.0 1.1e-36 125.3 0.0 1.0 1 0 0 1 1 1 1 Transposase IS200 like Patched PF02460.13 gi|257388685|ref|YP_003178458.1| - 0.047 11.6 0.0 0.052 11.4 0.0 1.0 1 0 0 1 1 1 0 Patched family Nepo_coat PF03391.10 gi|257388685|ref|YP_003178458.1| - 0.13 11.5 0.0 0.19 10.9 0.0 1.3 1 0 0 1 1 1 0 Nepovirus coat protein, central domain OrfB_Zn_ribbon PF07282.6 gi|257388686|ref|YP_003178459.1| - 1.1e-23 82.5 0.2 2e-23 81.8 0.1 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.14 gi|257388686|ref|YP_003178459.1| - 0.0074 15.7 0.0 0.011 15.0 0.0 1.2 1 0 0 1 1 1 1 Probable transposase Glyoxalase_2 PF12681.2 gi|257388689|ref|YP_003178462.1| - 2.7e-20 72.9 1.9 1.4e-11 44.9 0.1 2.1 2 0 0 2 2 2 2 Glyoxalase-like domain Glyoxalase PF00903.20 gi|257388689|ref|YP_003178462.1| - 3.5e-09 36.7 0.4 9.8e-05 22.3 0.1 2.8 2 1 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.1 gi|257388689|ref|YP_003178462.1| - 0.022 14.6 0.0 0.64 9.8 0.0 2.9 2 2 0 2 2 2 0 Glyoxalase-like domain HMGL-like PF00682.14 gi|257388691|ref|YP_003178464.1| - 5e-58 196.5 3.6 7.4e-58 196.0 2.5 1.3 1 0 0 1 1 1 1 HMGL-like TPP_enzyme_N PF02776.13 gi|257388692|ref|YP_003178465.1| - 3.5e-53 179.6 0.3 8.9e-53 178.3 0.2 1.7 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_C PF02775.16 gi|257388692|ref|YP_003178465.1| - 3.2e-52 176.1 0.0 7.4e-52 174.9 0.0 1.7 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_M PF00205.17 gi|257388692|ref|YP_003178465.1| - 7.9e-44 148.7 0.1 1.9e-43 147.5 0.1 1.7 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain CO_dh PF02552.11 gi|257388692|ref|YP_003178465.1| - 0.14 11.6 0.0 0.25 10.8 0.0 1.3 1 0 0 1 1 1 0 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit ALS_ss_C PF10369.4 gi|257388693|ref|YP_003178466.1| - 4.9e-22 77.4 0.2 7.6e-22 76.8 0.1 1.3 1 0 0 1 1 1 1 Small subunit of acetolactate synthase ACT_5 PF13710.1 gi|257388693|ref|YP_003178466.1| - 2.1e-14 53.0 0.0 4.4e-14 52.0 0.0 1.6 1 0 0 1 1 1 1 ACT domain ACT PF01842.20 gi|257388693|ref|YP_003178466.1| - 2.6e-13 49.1 0.2 9.2e-13 47.3 0.0 2.0 2 1 0 2 2 2 1 ACT domain ACT_4 PF13291.1 gi|257388693|ref|YP_003178466.1| - 0.00083 19.6 0.0 0.0018 18.5 0.0 1.5 1 0 0 1 1 1 1 ACT domain NIL PF09383.5 gi|257388693|ref|YP_003178466.1| - 0.0058 16.1 0.0 2.9 7.5 0.0 2.5 2 1 0 2 2 2 2 NIL domain Acylphosphatase PF00708.13 gi|257388693|ref|YP_003178466.1| - 0.092 12.8 0.4 3.1 7.9 0.0 2.5 3 0 0 3 3 3 0 Acylphosphatase T2SM_b PF10741.4 gi|257388693|ref|YP_003178466.1| - 0.21 11.2 1.1 4.2 7.0 0.0 2.4 2 1 1 3 3 3 0 Type II secretion system (T2SS), protein M subtype b IlvN PF07991.7 gi|257388694|ref|YP_003178467.1| - 1.2e-69 232.8 0.3 1.6e-69 232.4 0.2 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain IlvC PF01450.14 gi|257388694|ref|YP_003178467.1| - 3.8e-53 179.3 0.1 5.5e-53 178.7 0.0 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain 2-Hacid_dh_C PF02826.14 gi|257388694|ref|YP_003178467.1| - 2e-08 33.6 0.0 4.2e-08 32.5 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.12 gi|257388694|ref|YP_003178467.1| - 4.8e-08 33.3 0.0 9.6e-08 32.3 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.10 gi|257388694|ref|YP_003178467.1| - 1e-05 25.4 0.0 2e-05 24.5 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.18 gi|257388694|ref|YP_003178467.1| - 0.004 16.8 0.1 0.19 11.4 0.1 2.3 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AdoHcyase_NAD PF00670.16 gi|257388694|ref|YP_003178467.1| - 0.0045 16.8 0.3 0.01 15.6 0.1 1.6 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ApbA PF02558.11 gi|257388694|ref|YP_003178467.1| - 0.017 14.5 0.0 0.028 13.8 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Mur_ligase PF01225.20 gi|257388694|ref|YP_003178467.1| - 0.025 14.6 0.1 0.054 13.5 0.1 1.5 1 0 0 1 1 1 0 Mur ligase family, catalytic domain NAD_binding_7 PF13241.1 gi|257388694|ref|YP_003178467.1| - 0.027 14.7 0.1 0.18 12.1 0.0 2.1 2 0 0 2 2 2 0 Putative NAD(P)-binding Rossmann-like PF10727.4 gi|257388694|ref|YP_003178467.1| - 0.039 13.6 0.2 0.071 12.8 0.1 1.4 1 0 0 1 1 1 0 Rossmann-like domain CoA_binding_2 PF13380.1 gi|257388694|ref|YP_003178467.1| - 0.21 11.7 3.6 0.7 10.0 0.1 2.8 2 1 0 3 3 3 0 CoA binding domain Aconitase PF00330.15 gi|257388696|ref|YP_003178469.1| - 6.4e-150 499.6 0.0 7.3e-150 499.4 0.0 1.0 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) DUF521 PF04412.8 gi|257388696|ref|YP_003178469.1| - 0.014 13.9 0.0 0.023 13.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF521) Aconitase_C PF00694.14 gi|257388697|ref|YP_003178470.1| - 2.1e-20 73.1 0.0 3.2e-20 72.5 0.0 1.3 1 0 0 1 1 1 1 Aconitase C-terminal domain Iso_dh PF00180.15 gi|257388699|ref|YP_003178472.1| - 4.1e-92 308.8 0.1 4.6e-92 308.6 0.1 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase DeoRC PF00455.17 gi|257388700|ref|YP_003178473.1| - 3.6e-52 176.2 2.7 5.5e-52 175.6 1.9 1.3 1 0 0 1 1 1 1 DeoR C terminal sensor domain HTH_DeoR PF08220.7 gi|257388700|ref|YP_003178473.1| - 3.8e-16 58.3 0.1 7.5e-16 57.4 0.1 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_11 PF08279.7 gi|257388700|ref|YP_003178473.1| - 1.1e-07 31.3 0.1 2.2e-07 30.3 0.1 1.5 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.2 gi|257388700|ref|YP_003178473.1| - 9.2e-05 22.0 1.1 0.00069 19.2 0.2 2.4 2 1 0 2 2 2 1 MarR family MarR PF01047.17 gi|257388700|ref|YP_003178473.1| - 0.00021 20.9 0.1 0.00091 18.8 0.0 2.0 2 0 0 2 2 2 1 MarR family GntR PF00392.16 gi|257388700|ref|YP_003178473.1| - 0.0003 20.1 0.0 0.0011 18.3 0.0 1.9 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_20 PF12840.2 gi|257388700|ref|YP_003178473.1| - 0.00045 19.9 1.6 0.0011 18.7 0.1 2.4 3 1 0 3 3 3 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|257388700|ref|YP_003178473.1| - 0.00068 18.9 0.8 0.0015 17.8 0.1 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_23 PF13384.1 gi|257388700|ref|YP_003178473.1| - 0.00073 19.1 0.8 0.0018 17.8 0.1 2.0 2 0 0 2 2 2 1 Homeodomain-like domain TrmB PF01978.14 gi|257388700|ref|YP_003178473.1| - 0.004 16.8 0.0 0.0073 15.9 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.5 gi|257388700|ref|YP_003178473.1| - 0.0048 16.4 0.1 0.014 14.9 0.0 1.8 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_Mga PF08280.6 gi|257388700|ref|YP_003178473.1| - 0.0065 16.2 0.0 0.01 15.5 0.0 1.3 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_38 PF13936.1 gi|257388700|ref|YP_003178473.1| - 0.012 15.1 0.1 0.024 14.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Tnp_1 PF01527.15 gi|257388700|ref|YP_003178473.1| - 0.012 15.5 0.0 0.034 14.0 0.0 1.8 1 0 0 1 1 1 0 Transposase RPA_C PF08784.6 gi|257388700|ref|YP_003178473.1| - 0.013 15.9 0.0 0.047 14.0 0.0 1.9 1 1 1 2 2 2 0 Replication protein A C terminal HTH_5 PF01022.15 gi|257388700|ref|YP_003178473.1| - 0.015 14.9 0.0 0.025 14.2 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.14 gi|257388700|ref|YP_003178473.1| - 0.019 14.9 0.0 0.034 14.0 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_27 PF13463.1 gi|257388700|ref|YP_003178473.1| - 0.057 13.7 0.2 0.17 12.2 0.0 1.8 2 0 0 2 2 1 0 Winged helix DNA-binding domain FeoC PF09012.5 gi|257388700|ref|YP_003178473.1| - 0.073 12.7 0.0 0.12 12.0 0.0 1.4 1 0 0 1 1 1 0 FeoC like transcriptional regulator FaeA PF04703.7 gi|257388700|ref|YP_003178473.1| - 0.081 13.0 0.0 0.2 11.8 0.0 1.7 2 0 0 2 2 1 0 FaeA-like protein HTH_28 PF13518.1 gi|257388700|ref|YP_003178473.1| - 0.12 12.4 0.1 0.21 11.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain PfkB PF00294.19 gi|257388701|ref|YP_003178474.1| - 1.7e-37 129.1 6.2 2.2e-37 128.8 4.3 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.7 gi|257388701|ref|YP_003178474.1| - 0.0005 19.3 0.0 0.00083 18.6 0.0 1.5 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase PfkB PF00294.19 gi|257388702|ref|YP_003178475.1| - 4.1e-08 32.7 3.0 7.1e-08 31.9 1.8 1.4 2 0 0 2 2 2 1 pfkB family carbohydrate kinase DeoC PF01791.4 gi|257388703|ref|YP_003178476.1| - 1.2e-28 99.9 0.0 1.4e-28 99.7 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase AP_endonuc_2 PF01261.19 gi|257388703|ref|YP_003178476.1| - 0.002 17.4 0.0 0.0039 16.5 0.0 1.6 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel FIST PF08495.5 gi|257388705|ref|YP_003178478.1| - 3.1e-49 166.8 0.4 7.2e-47 159.1 0.2 2.3 2 0 0 2 2 2 2 FIST N domain FIST_C PF10442.4 gi|257388705|ref|YP_003178478.1| - 2.9e-34 117.9 0.6 4.9e-32 110.7 0.0 2.7 3 0 0 3 3 3 2 FIST C domain OsmC PF02566.14 gi|257388706|ref|YP_003178479.1| - 1.6e-11 44.3 0.0 2.1e-11 43.8 0.0 1.2 1 0 0 1 1 1 1 OsmC-like protein DUF1292 PF06949.6 gi|257388706|ref|YP_003178479.1| - 8.9 6.7 11.6 9.8 6.6 3.4 2.6 2 1 1 3 3 3 0 Protein of unknown function (DUF1292) Meth_synt_2 PF01717.13 gi|257388707|ref|YP_003178480.1| - 8.7e-76 254.9 0.0 1.1e-75 254.6 0.0 1.1 1 0 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.7 gi|257388707|ref|YP_003178480.1| - 6.5e-20 71.6 0.1 9.2e-20 71.1 0.0 1.3 1 1 0 1 1 1 1 Cobalamin-independent synthase, N-terminal domain URO-D PF01208.12 gi|257388707|ref|YP_003178480.1| - 0.00011 21.2 0.0 0.00017 20.6 0.0 1.3 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) Methyltransf_9 PF08003.6 gi|257388707|ref|YP_003178480.1| - 0.012 14.3 0.0 0.017 13.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) Meth_synt_1 PF08267.7 gi|257388708|ref|YP_003178481.1| - 4.3e-25 88.6 0.0 2.9e-22 79.3 0.0 2.1 1 1 1 2 2 2 2 Cobalamin-independent synthase, N-terminal domain Meth_synt_2 PF01717.13 gi|257388708|ref|YP_003178481.1| - 1.1e-17 64.0 0.0 1.2e-17 63.8 0.0 1.1 1 0 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Spore_YhcN_YlaJ PF09580.5 gi|257388708|ref|YP_003178481.1| - 0.031 14.3 0.4 0.053 13.6 0.3 1.3 1 0 0 1 1 1 0 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) GATA PF00320.22 gi|257388709|ref|YP_003178482.1| - 0.0044 16.3 1.1 0.01 15.1 0.3 1.8 1 1 1 2 2 2 1 GATA zinc finger RRN7 PF11781.3 gi|257388709|ref|YP_003178482.1| - 0.0093 15.4 2.0 0.091 12.2 0.1 2.1 2 0 0 2 2 2 1 RNA polymerase I-specific transcription initiation factor Rrn7 zf-CHY PF05495.7 gi|257388709|ref|YP_003178482.1| - 0.038 14.1 1.0 0.045 13.9 0.7 1.1 1 0 0 1 1 1 0 CHY zinc finger Zn-ribbon_8 PF09723.5 gi|257388709|ref|YP_003178482.1| - 0.4 10.6 2.3 1.1 9.2 1.6 1.7 1 1 0 1 1 1 0 Zinc ribbon domain DUF35_N PF12172.3 gi|257388709|ref|YP_003178482.1| - 1.3 8.9 5.7 8.6 6.4 3.9 2.1 1 1 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zf-NADH-PPase PF09297.6 gi|257388709|ref|YP_003178482.1| - 5.9 6.4 6.7 11 5.6 0.2 2.9 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain Methyltransf_26 PF13659.1 gi|257388710|ref|YP_003178483.1| - 1.9e-17 63.3 0.2 3.2e-17 62.6 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|257388710|ref|YP_003178483.1| - 1.1e-09 37.8 0.0 1.7e-09 37.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_11 PF08241.7 gi|257388710|ref|YP_003178483.1| - 4.2e-09 36.7 0.0 2.6e-06 27.8 0.0 2.2 2 0 0 2 2 2 2 Methyltransferase domain Methyltransf_23 PF13489.1 gi|257388710|ref|YP_003178483.1| - 1.6e-07 31.1 0.0 9e-07 28.7 0.0 2.0 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|257388710|ref|YP_003178483.1| - 3.6e-07 29.9 0.0 5.4e-07 29.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|257388710|ref|YP_003178483.1| - 3.8e-07 30.6 0.0 8.4e-07 29.5 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|257388710|ref|YP_003178483.1| - 3e-05 24.3 0.0 0.00036 20.9 0.0 2.2 1 1 0 1 1 1 1 Methyltransferase domain UPF0146 PF03686.8 gi|257388710|ref|YP_003178483.1| - 0.00036 20.3 0.0 0.00058 19.6 0.0 1.3 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0146) MetW PF07021.7 gi|257388710|ref|YP_003178483.1| - 0.00041 19.7 0.0 0.00059 19.2 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_25 PF13649.1 gi|257388710|ref|YP_003178483.1| - 0.0019 18.5 0.0 0.003 17.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain TrkA_N PF02254.13 gi|257388710|ref|YP_003178483.1| - 0.0057 16.6 0.0 0.018 15.0 0.0 1.7 2 0 0 2 2 2 1 TrkA-N domain PCMT PF01135.14 gi|257388710|ref|YP_003178483.1| - 0.042 13.3 0.0 0.083 12.4 0.0 1.5 2 0 0 2 2 2 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CMAS PF02353.15 gi|257388710|ref|YP_003178483.1| - 0.044 12.8 0.0 0.26 10.3 0.0 1.8 2 0 0 2 2 2 0 Mycolic acid cyclopropane synthetase Ubie_methyltran PF01209.13 gi|257388710|ref|YP_003178483.1| - 0.13 11.3 0.0 7 5.6 0.0 2.3 2 1 0 2 2 2 0 ubiE/COQ5 methyltransferase family N6_N4_Mtase PF01555.13 gi|257388710|ref|YP_003178483.1| - 0.15 11.5 0.0 16 4.8 0.0 2.1 2 0 0 2 2 2 0 DNA methylase TPMT PF05724.6 gi|257388710|ref|YP_003178483.1| - 0.15 11.4 0.0 0.52 9.6 0.0 1.7 2 0 0 2 2 2 0 Thiopurine S-methyltransferase (TPMT) RrnaAD PF00398.15 gi|257388711|ref|YP_003178484.1| - 6.7e-52 176.1 0.0 7.5e-52 175.9 0.0 1.0 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_26 PF13659.1 gi|257388711|ref|YP_003178484.1| - 5.5e-10 39.2 0.1 1.1e-09 38.3 0.1 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|257388711|ref|YP_003178484.1| - 7.6e-07 29.6 0.0 2.1e-06 28.2 0.0 1.8 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|257388711|ref|YP_003178484.1| - 0.00057 20.3 0.0 0.0013 19.1 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|257388711|ref|YP_003178484.1| - 0.017 15.4 0.0 0.034 14.4 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_11 PF08241.7 gi|257388711|ref|YP_003178484.1| - 0.018 15.5 0.0 0.041 14.3 0.0 1.6 1 0 0 1 1 1 0 Methyltransferase domain NodS PF05401.6 gi|257388711|ref|YP_003178484.1| - 0.047 13.0 0.0 0.091 12.1 0.0 1.4 1 0 0 1 1 1 0 Nodulation protein S (NodS) TrkA_N PF02254.13 gi|257388711|ref|YP_003178484.1| - 0.055 13.4 0.0 0.11 12.4 0.0 1.5 1 0 0 1 1 1 0 TrkA-N domain DUF655 PF04919.7 gi|257388712|ref|YP_003178485.1| - 1.1e-61 207.6 0.1 1.3e-61 207.5 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_3 PF12836.2 gi|257388712|ref|YP_003178485.1| - 4.5e-05 23.3 0.1 8.1e-05 22.4 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_6 PF14579.1 gi|257388712|ref|YP_003178485.1| - 0.0012 18.8 0.0 0.0024 17.8 0.0 1.6 1 1 0 1 1 1 1 Helix-hairpin-helix motif GxDLY PF14607.1 gi|257388712|ref|YP_003178485.1| - 0.021 14.2 0.0 0.033 13.6 0.0 1.2 1 0 0 1 1 1 0 N-terminus of Esterase_SGNH_hydro-type HHH PF00633.18 gi|257388712|ref|YP_003178485.1| - 0.025 14.2 0.0 0.1 12.3 0.0 2.0 2 0 0 2 2 2 0 Helix-hairpin-helix motif HHH_5 PF14520.1 gi|257388712|ref|YP_003178485.1| - 0.12 12.5 0.1 0.74 10.0 0.1 2.0 1 1 0 1 1 1 0 Helix-hairpin-helix domain RNA_pol_Rpb4 PF03874.11 gi|257388713|ref|YP_003178486.1| - 5e-16 58.7 1.4 5.7e-16 58.5 1.0 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb4 RPAP3_C PF13877.1 gi|257388713|ref|YP_003178486.1| - 0.00063 19.6 0.4 0.12 12.3 0.0 2.2 1 1 1 2 2 2 2 Potential Monad-binding region of RPAP3 DUF2666 PF10869.3 gi|257388713|ref|YP_003178486.1| - 0.096 12.7 1.4 0.2 11.7 0.1 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF2666) Imm45 PF15603.1 gi|257388713|ref|YP_003178486.1| - 0.2 11.8 1.5 3 8.0 0.4 2.6 2 1 1 3 3 3 0 Immunity protein 45 Ribosomal_L21e PF01157.13 gi|257388714|ref|YP_003178487.1| - 5.8e-34 115.8 0.0 6.4e-34 115.7 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e EF1_GNE PF00736.14 gi|257388715|ref|YP_003178488.1| - 5.9e-23 80.3 0.1 6.3e-23 80.2 0.1 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain DUF3073 PF11273.3 gi|257388715|ref|YP_003178488.1| - 0.0093 16.4 0.0 0.0093 16.4 0.0 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF3073) DUF1610 PF07754.6 gi|257388716|ref|YP_003178489.1| - 1e-09 38.2 15.7 1.8e-05 24.7 1.9 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF1610) OrfB_Zn_ribbon PF07282.6 gi|257388716|ref|YP_003178489.1| - 0.0028 17.2 12.1 0.042 13.5 4.4 2.2 1 1 1 2 2 2 2 Putative transposase DNA-binding domain zf-Mss51 PF13824.1 gi|257388716|ref|YP_003178489.1| - 0.0037 17.0 12.4 0.41 10.5 1.5 2.9 1 1 1 2 2 2 2 Zinc-finger of mitochondrial splicing suppressor 51 C1_3 PF07649.7 gi|257388716|ref|YP_003178489.1| - 0.0055 16.7 11.5 0.025 14.6 2.6 2.3 2 0 0 2 2 2 1 C1-like domain Zn_Tnp_IS91 PF14319.1 gi|257388716|ref|YP_003178489.1| - 0.014 14.8 9.5 0.017 14.6 6.6 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain DZR PF12773.2 gi|257388716|ref|YP_003178489.1| - 0.02 14.6 2.9 0.02 14.6 2.0 2.4 1 1 1 2 2 2 0 Double zinc ribbon PolC_DP2 PF03833.8 gi|257388716|ref|YP_003178489.1| - 0.02 12.5 7.4 0.022 12.4 5.1 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 Ribosomal_L32p PF01783.18 gi|257388716|ref|YP_003178489.1| - 0.025 14.7 2.5 3 8.0 1.7 2.5 1 1 0 1 1 1 0 Ribosomal L32p protein family zf-HIT PF04438.11 gi|257388716|ref|YP_003178489.1| - 0.029 14.0 14.2 0.23 11.1 2.5 2.8 1 1 1 2 2 2 0 HIT zinc finger NMDAR2_C PF10565.4 gi|257388716|ref|YP_003178489.1| - 0.029 13.0 6.7 0.032 12.9 4.6 1.0 1 0 0 1 1 1 0 N-methyl D-aspartate receptor 2B3 C-terminus DNA_RNApol_7kD PF03604.8 gi|257388716|ref|YP_003178489.1| - 0.047 13.1 14.0 1.8 8.1 1.9 3.5 2 2 1 3 3 3 0 DNA directed RNA polymerase, 7 kDa subunit C1_1 PF00130.17 gi|257388716|ref|YP_003178489.1| - 0.067 12.9 10.9 5.5 6.7 7.6 2.3 1 1 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) UPF0547 PF10571.4 gi|257388716|ref|YP_003178489.1| - 0.14 11.8 11.8 0.17 11.6 4.7 3.2 2 1 0 2 2 2 0 Uncharacterised protein family UPF0547 zinc_ribbon_2 PF13240.1 gi|257388716|ref|YP_003178489.1| - 0.21 11.1 0.5 0.21 11.1 0.4 3.8 3 1 0 3 3 3 0 zinc-ribbon domain DUF2039 PF10217.4 gi|257388716|ref|YP_003178489.1| - 0.21 11.5 7.6 0.35 10.9 5.2 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2039) zf-H2C2_2 PF13465.1 gi|257388716|ref|YP_003178489.1| - 0.22 11.8 14.9 1.6 9.1 0.5 3.8 2 1 2 4 4 4 0 Zinc-finger double domain Sgf11 PF08209.6 gi|257388716|ref|YP_003178489.1| - 0.3 10.4 13.9 0.3 10.4 1.4 3.4 2 1 0 3 3 3 0 Sgf11 (transcriptional regulation protein) zf-UBR PF02207.15 gi|257388716|ref|YP_003178489.1| - 0.38 10.4 12.2 15 5.4 8.5 2.6 1 1 0 1 1 1 0 Putative zinc finger in N-recognin (UBR box) FYVE_2 PF02318.11 gi|257388716|ref|YP_003178489.1| - 0.4 10.6 7.3 0.43 10.4 5.1 1.0 1 0 0 1 1 1 0 FYVE-type zinc finger zf-C2H2 PF00096.21 gi|257388716|ref|YP_003178489.1| - 0.42 11.0 18.0 3 8.3 0.4 4.0 4 0 0 4 4 4 0 Zinc finger, C2H2 type zinc-ribbons_6 PF07191.7 gi|257388716|ref|YP_003178489.1| - 0.53 10.1 11.8 2.7 7.8 4.4 2.2 1 1 1 2 2 2 0 zinc-ribbons Ribosomal_L37ae PF01780.14 gi|257388716|ref|YP_003178489.1| - 0.53 10.1 8.8 0.64 9.9 1.8 2.5 1 1 1 2 2 2 0 Ribosomal L37ae protein family zf-RING_5 PF14634.1 gi|257388716|ref|YP_003178489.1| - 0.57 9.9 10.2 1.5 8.5 1.0 2.5 2 1 0 2 2 2 0 zinc-RING finger domain zf-C2H2_6 PF13912.1 gi|257388716|ref|YP_003178489.1| - 0.77 9.7 15.4 2 8.4 0.8 3.6 4 0 0 4 4 3 0 C2H2-type zinc finger Zn_Tnp_IS1595 PF12760.2 gi|257388716|ref|YP_003178489.1| - 0.84 9.4 18.4 74 3.2 12.7 3.3 1 1 0 1 1 1 0 Transposase zinc-ribbon domain zf-UBP PF02148.14 gi|257388716|ref|YP_003178489.1| - 0.88 9.7 7.8 0.32 11.1 0.7 2.4 2 1 0 2 2 2 0 Zn-finger in ubiquitin-hydrolases and other protein DUF2296 PF10058.4 gi|257388716|ref|YP_003178489.1| - 0.92 9.3 10.6 4.1 7.2 0.1 3.7 2 1 2 4 4 4 0 Predicted integral membrane metal-binding protein (DUF2296) Prok-RING_1 PF14446.1 gi|257388716|ref|YP_003178489.1| - 1 9.1 11.7 0.33 10.6 1.3 2.3 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 zf-dskA_traR PF01258.12 gi|257388716|ref|YP_003178489.1| - 1 9.1 9.5 2.2 8.1 0.9 3.1 3 0 0 3 3 3 0 Prokaryotic dksA/traR C4-type zinc finger zf-ribbon_3 PF13248.1 gi|257388716|ref|YP_003178489.1| - 1 8.6 15.9 0.48 9.6 3.0 3.3 1 1 1 2 2 2 0 zinc-ribbon domain RNHCP PF12647.2 gi|257388716|ref|YP_003178489.1| - 1.1 9.1 10.2 1.7 8.5 3.4 2.1 1 1 1 2 2 2 0 RNHCP domain PhnA_Zn_Ribbon PF08274.7 gi|257388716|ref|YP_003178489.1| - 1.3 8.8 0.0 1.3 8.8 0.0 3.1 3 1 0 3 3 3 0 PhnA Zinc-Ribbon HypA PF01155.14 gi|257388716|ref|YP_003178489.1| - 1.3 8.6 11.4 0.45 10.2 2.5 2.1 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family NMD3 PF04981.8 gi|257388716|ref|YP_003178489.1| - 1.3 8.0 8.9 1.7 7.7 6.1 1.1 1 0 0 1 1 1 0 NMD3 family Ribosomal_L34e PF01199.13 gi|257388716|ref|YP_003178489.1| - 1.4 9.2 4.8 5.5 7.2 0.1 2.4 1 1 1 2 2 2 0 Ribosomal protein L34e IBR PF01485.16 gi|257388716|ref|YP_003178489.1| - 1.4 8.8 12.0 12 5.8 8.3 2.1 1 1 0 1 1 1 0 IBR domain DNA_ligase_ZBD PF03119.11 gi|257388716|ref|YP_003178489.1| - 1.5 8.6 7.7 1.4 8.6 0.3 2.7 2 1 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain TFIIS_C PF01096.13 gi|257388716|ref|YP_003178489.1| - 2.7 7.6 15.8 8.1 6.1 0.1 4.0 2 1 2 4 4 4 0 Transcription factor S-II (TFIIS) zf-B_box PF00643.19 gi|257388716|ref|YP_003178489.1| - 2.9 7.8 10.9 2.7 7.9 4.6 2.5 1 1 0 2 2 2 0 B-box zinc finger DUF2387 PF09526.5 gi|257388716|ref|YP_003178489.1| - 2.9 7.8 12.6 2.9 7.8 0.3 2.3 1 1 1 2 2 2 0 Probable metal-binding protein (DUF2387) zf-C2HC5 PF06221.8 gi|257388716|ref|YP_003178489.1| - 2.9 7.6 12.4 1.1 9.1 3.2 2.4 1 1 1 2 2 2 0 Putative zinc finger motif, C2HC5-type Zn-ribbon_8 PF09723.5 gi|257388716|ref|YP_003178489.1| - 4.9 7.2 19.3 14 5.7 0.5 3.8 1 1 3 4 4 4 0 Zinc ribbon domain C1_4 PF07975.7 gi|257388716|ref|YP_003178489.1| - 5.9 6.9 12.6 3.9e+02 1.1 8.9 2.9 1 1 0 1 1 1 0 TFIIH C1-like domain C1_2 PF03107.11 gi|257388716|ref|YP_003178489.1| - 6.6 6.9 9.6 22 5.2 3.3 2.8 1 1 1 2 2 2 0 C1 domain zf-MYND PF01753.13 gi|257388716|ref|YP_003178489.1| - 6.8 6.6 10.8 1.7e+02 2.1 7.7 2.4 1 1 0 1 1 1 0 MYND finger DUF2391 PF09622.5 gi|257388717|ref|YP_003178490.1| - 0.031 13.4 6.9 0.16 11.1 4.8 1.8 1 1 0 1 1 1 0 Putative integral membrane protein (DUF2391) Siah-Interact_N PF09032.6 gi|257388717|ref|YP_003178490.1| - 0.16 12.0 0.3 0.24 11.4 0.2 1.2 1 0 0 1 1 1 0 Siah interacting protein, N terminal 3HCDH PF00725.17 gi|257388718|ref|YP_003178491.1| - 7.3e-24 83.9 0.0 1.7e-23 82.8 0.0 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 3HCDH_N PF02737.13 gi|257388718|ref|YP_003178491.1| - 7.9e-20 71.2 0.5 3.3e-19 69.2 0.4 1.9 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TFIIB PF00382.14 gi|257388719|ref|YP_003178492.1| - 3.7e-49 164.3 1.8 7.1e-25 86.6 0.1 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|257388719|ref|YP_003178492.1| - 1.6e-15 56.0 2.7 2.8e-15 55.3 1.8 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding Cyclin_N PF00134.18 gi|257388719|ref|YP_003178492.1| - 0.0061 16.1 0.1 0.02 14.4 0.0 1.9 2 0 0 2 2 2 1 Cyclin, N-terminal domain OrfB_Zn_ribbon PF07282.6 gi|257388719|ref|YP_003178492.1| - 0.011 15.3 2.3 0.014 15.0 0.6 1.9 2 0 0 2 2 2 0 Putative transposase DNA-binding domain HTH_23 PF13384.1 gi|257388719|ref|YP_003178492.1| - 0.032 13.8 0.6 0.59 9.8 0.0 3.1 3 0 0 3 3 3 0 Homeodomain-like domain Sigma70_r4 PF04545.11 gi|257388719|ref|YP_003178492.1| - 0.038 13.3 1.0 0.3 10.4 0.0 3.0 3 1 0 3 3 3 0 Sigma-70, region 4 DZR PF12773.2 gi|257388719|ref|YP_003178492.1| - 0.54 10.1 3.8 1.9 8.3 2.8 1.7 1 1 0 1 1 1 0 Double zinc ribbon Bac_rhodopsin PF01036.13 gi|257388720|ref|YP_003178493.1| - 1.5e-56 191.2 21.2 1.8e-56 190.9 14.7 1.0 1 0 0 1 1 1 1 Bacteriorhodopsin-like protein MCPsignal PF00015.16 gi|257388721|ref|YP_003178494.1| - 7e-50 169.5 32.8 7e-50 169.5 22.7 4.5 2 1 3 5 5 5 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.20 gi|257388721|ref|YP_003178494.1| - 9.9e-12 44.8 1.0 9.9e-12 44.8 0.7 6.3 5 2 0 5 5 5 2 HAMP domain WEMBL PF05701.6 gi|257388721|ref|YP_003178494.1| - 0.0042 15.6 12.1 0.0042 15.6 8.4 3.2 1 1 0 2 2 1 1 Weak chloroplast movement under blue light TMP_2 PF06791.8 gi|257388721|ref|YP_003178494.1| - 0.0044 16.6 8.2 0.0044 16.6 5.7 3.9 1 1 1 3 3 3 1 Prophage tail length tape measure protein Cache_1 PF02743.13 gi|257388721|ref|YP_003178494.1| - 0.014 14.9 0.0 0.06 12.9 0.0 2.2 2 0 0 2 2 2 0 Cache domain DUF948 PF06103.6 gi|257388721|ref|YP_003178494.1| - 0.014 15.2 37.5 0.21 11.4 0.6 7.0 4 2 4 8 8 8 0 Bacterial protein of unknown function (DUF948) MbtH PF03621.8 gi|257388721|ref|YP_003178494.1| - 0.071 12.4 0.0 0.21 10.9 0.0 1.7 1 0 0 1 1 1 0 MbtH-like protein Laminin_II PF06009.7 gi|257388721|ref|YP_003178494.1| - 0.074 12.8 45.2 0.3 10.8 0.7 5.9 4 2 2 6 6 6 0 Laminin Domain II DUF1664 PF07889.7 gi|257388721|ref|YP_003178494.1| - 0.5 10.1 31.8 3.7 7.3 0.8 5.9 3 2 2 5 5 5 0 Protein of unknown function (DUF1664) DUF4200 PF13863.1 gi|257388721|ref|YP_003178494.1| - 1.2 9.0 39.4 0.38 10.6 5.2 5.0 3 2 2 5 5 5 0 Domain of unknown function (DUF4200) TPR_MLP1_2 PF07926.7 gi|257388721|ref|YP_003178494.1| - 1.6 8.5 50.8 0.24 11.1 4.1 4.7 3 2 1 4 4 4 0 TPR/MLP1/MLP2-like protein LOH1CR12 PF10158.4 gi|257388721|ref|YP_003178494.1| - 1.9 8.2 15.0 9 6.0 0.4 4.5 2 2 3 5 5 5 0 Tumour suppressor protein APG6 PF04111.7 gi|257388721|ref|YP_003178494.1| - 9.3 5.1 43.6 0.015 14.3 4.6 3.8 2 1 2 4 4 4 0 Autophagy protein Apg6 adh_short PF00106.20 gi|257388722|ref|YP_003178495.1| - 5.3e-23 81.7 0.6 7.7e-23 81.2 0.4 1.2 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|257388722|ref|YP_003178495.1| - 1e-13 51.6 0.0 5.5e-13 49.2 0.0 1.8 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|257388722|ref|YP_003178495.1| - 3.3e-08 33.4 0.3 4.9e-08 32.8 0.2 1.3 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|257388722|ref|YP_003178495.1| - 2.3e-07 30.4 0.1 8.5e-07 28.6 0.0 2.0 2 1 0 2 2 2 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|257388722|ref|YP_003178495.1| - 0.15 10.7 0.2 0.22 10.2 0.1 1.2 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family AhpC-TSA PF00578.16 gi|257388723|ref|YP_003178496.1| - 1.9e-33 114.7 0.0 2.2e-33 114.5 0.0 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|257388723|ref|YP_003178496.1| - 3.1e-25 88.4 0.0 3.6e-25 88.1 0.0 1.0 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.1 gi|257388723|ref|YP_003178496.1| - 0.00014 21.7 0.0 0.0021 17.9 0.0 2.0 1 1 1 2 2 2 1 AhpC/TSA antioxidant enzyme DUF899 PF05988.7 gi|257388723|ref|YP_003178496.1| - 0.016 14.6 0.0 0.021 14.2 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF899) MttA_Hcf106 PF02416.11 gi|257388724|ref|YP_003178497.1| - 1e-14 53.3 1.1 1.2e-14 53.0 0.8 1.3 1 1 0 1 1 1 1 mttA/Hcf106 family DUF4375 PF14300.1 gi|257388724|ref|YP_003178497.1| - 0.098 12.6 0.1 0.12 12.3 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4375) Prok-E2_E PF14462.1 gi|257388724|ref|YP_003178497.1| - 0.13 11.8 0.0 0.17 11.4 0.0 1.2 1 0 0 1 1 1 0 Prokaryotic E2 family E Copper-bind PF00127.15 gi|257388725|ref|YP_003178498.1| - 1.2e-19 70.3 0.0 2.9e-09 37.0 0.0 3.0 2 2 0 2 2 2 2 Copper binding proteins, plastocyanin/azurin family Pheromone PF08015.6 gi|257388725|ref|YP_003178498.1| - 0.023 15.5 0.5 0.055 14.2 0.3 1.7 1 0 0 1 1 1 0 Fungal mating-type pheromone Cupredoxin_1 PF13473.1 gi|257388725|ref|YP_003178498.1| - 0.18 11.7 0.0 0.91 9.4 0.0 1.9 2 0 0 2 2 2 0 Cupredoxin-like domain HTH_20 PF12840.2 gi|257388726|ref|YP_003178499.1| - 9.4e-11 41.3 0.2 1.3e-10 40.9 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|257388726|ref|YP_003178499.1| - 0.0019 17.7 0.1 0.0031 17.0 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|257388726|ref|YP_003178499.1| - 0.0039 16.8 0.1 0.0051 16.4 0.0 1.2 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|257388726|ref|YP_003178499.1| - 0.0058 16.3 0.0 0.0079 15.8 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_7 PF02796.10 gi|257388726|ref|YP_003178499.1| - 0.082 12.7 0.0 0.13 12.1 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase PspC PF04024.7 gi|257388727|ref|YP_003178500.1| - 0.095 12.1 0.3 0.095 12.1 0.2 2.1 1 1 1 2 2 2 0 PspC domain DUF202 PF02656.10 gi|257388727|ref|YP_003178500.1| - 4.8 7.4 6.0 15 5.8 4.3 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF202) DUF350 PF03994.9 gi|257388727|ref|YP_003178500.1| - 9.2 6.0 10.2 0.58 9.9 3.7 1.6 2 0 0 2 2 2 0 Domain of Unknown Function (DUF350) Copper-bind PF00127.15 gi|257388728|ref|YP_003178501.1| - 1.3e-14 54.2 1.4 2.9e-14 53.0 0.1 2.1 2 1 0 2 2 2 1 Copper binding proteins, plastocyanin/azurin family TAT_signal PF10518.4 gi|257388728|ref|YP_003178501.1| - 0.00015 21.4 3.8 0.00041 20.1 2.6 1.8 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Cupredoxin_1 PF13473.1 gi|257388728|ref|YP_003178501.1| - 0.0011 18.8 0.1 0.002 17.9 0.0 1.4 1 1 0 1 1 1 1 Cupredoxin-like domain PKD PF00801.15 gi|257388728|ref|YP_003178501.1| - 3.5 7.4 6.4 35 4.2 4.4 2.4 1 1 0 1 1 1 0 PKD domain DPRP PF04244.8 gi|257388729|ref|YP_003178502.1| - 6e-60 202.5 0.0 9.2e-60 201.9 0.0 1.3 1 0 0 1 1 1 1 Deoxyribodipyrimidine photo-lyase-related protein FAD_binding_7 PF03441.9 gi|257388729|ref|YP_003178502.1| - 5.9e-14 51.9 0.1 8.8e-14 51.3 0.1 1.2 1 0 0 1 1 1 1 FAD binding domain of DNA photolyase ABC1 PF03109.11 gi|257388730|ref|YP_003178503.1| - 9.7e-26 90.0 0.0 3e-25 88.5 0.0 1.8 2 0 0 2 2 2 1 ABC1 family APH PF01636.18 gi|257388730|ref|YP_003178503.1| - 0.037 13.7 0.3 0.037 13.7 0.2 2.4 3 1 0 3 3 3 0 Phosphotransferase enzyme family WaaY PF06176.6 gi|257388730|ref|YP_003178503.1| - 0.059 12.5 0.0 0.095 11.9 0.0 1.2 1 0 0 1 1 1 0 Lipopolysaccharide core biosynthesis protein (WaaY) RIO1 PF01163.17 gi|257388730|ref|YP_003178503.1| - 0.066 12.5 0.0 0.13 11.5 0.0 1.4 1 0 0 1 1 1 0 RIO1 family TrkA_N PF02254.13 gi|257388731|ref|YP_003178504.1| - 3.5e-31 107.5 11.2 3.9e-16 59.0 0.4 2.6 2 0 0 2 2 2 2 TrkA-N domain TrkA_C PF02080.16 gi|257388731|ref|YP_003178504.1| - 1e-21 76.2 8.3 6.1e-12 44.9 0.0 5.2 6 0 0 6 6 6 2 TrkA-C domain KH_1 PF00013.24 gi|257388731|ref|YP_003178504.1| - 0.0043 16.6 0.7 9.3 5.9 0.0 4.2 3 1 0 3 3 3 2 KH domain HTH_13 PF11972.3 gi|257388731|ref|YP_003178504.1| - 0.018 14.9 0.7 0.28 11.0 0.0 3.0 3 0 0 3 3 3 0 HTH DNA binding domain Ion_trans_2 PF07885.11 gi|257388731|ref|YP_003178504.1| - 0.055 13.1 7.6 0.1 12.2 5.3 1.4 1 0 0 1 1 1 0 Ion channel E1-E2_ATPase PF00122.15 gi|257388732|ref|YP_003178505.1| - 9.2e-50 168.8 0.1 1.8e-49 167.8 0.1 1.5 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.21 gi|257388732|ref|YP_003178505.1| - 4e-49 167.9 5.9 4e-49 167.9 4.1 1.8 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|257388732|ref|YP_003178505.1| - 4.3e-26 90.8 0.0 1.5e-14 53.8 0.0 2.9 2 0 0 2 2 2 2 Heavy-metal-associated domain HAD PF12710.2 gi|257388732|ref|YP_003178505.1| - 5.9e-20 72.2 0.0 1.5e-19 70.8 0.0 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|257388732|ref|YP_003178505.1| - 1.9e-05 24.3 1.2 0.0015 18.1 0.9 2.6 3 0 0 3 3 3 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.1 gi|257388732|ref|YP_003178505.1| - 0.041 13.7 0.1 0.44 10.4 0.0 2.8 4 0 0 4 4 4 0 Haloacid dehalogenase-like hydrolase HTH_AsnC-type PF13404.1 gi|257388733|ref|YP_003178506.1| - 1.8e-16 59.3 1.6 1.8e-16 59.3 1.1 2.0 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.1 gi|257388733|ref|YP_003178506.1| - 1.3e-13 50.0 0.1 2.2e-13 49.3 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|257388733|ref|YP_003178506.1| - 8.7e-06 25.3 3.4 1.8e-05 24.2 0.3 2.6 3 0 0 3 3 3 1 MarR family HTH_20 PF12840.2 gi|257388733|ref|YP_003178506.1| - 8.2e-05 22.3 0.2 0.00025 20.7 0.1 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain YHS PF04945.8 gi|257388733|ref|YP_003178506.1| - 0.00048 19.9 0.6 0.00078 19.2 0.4 1.3 1 0 0 1 1 1 1 YHS domain Arc_trans_TRASH PF08394.5 gi|257388733|ref|YP_003178506.1| - 0.0006 19.9 3.5 0.00093 19.3 2.4 1.3 1 0 0 1 1 1 1 Archaeal TRASH domain HTH_27 PF13463.1 gi|257388733|ref|YP_003178506.1| - 0.00071 19.8 0.9 0.0021 18.3 0.1 2.1 2 1 0 2 2 2 1 Winged helix DNA-binding domain Sigma70_r4 PF04545.11 gi|257388733|ref|YP_003178506.1| - 0.0014 17.9 0.1 0.0026 17.0 0.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_IclR PF09339.5 gi|257388733|ref|YP_003178506.1| - 0.0028 17.2 0.0 0.0063 16.0 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.17 gi|257388733|ref|YP_003178506.1| - 0.0061 16.2 0.0 0.011 15.3 0.0 1.4 1 0 0 1 1 1 1 MarR family Ta0938 PF11494.3 gi|257388733|ref|YP_003178506.1| - 0.0063 16.6 0.3 0.0099 15.9 0.2 1.3 1 0 0 1 1 1 1 Ta0938 ATPase-cat_bd PF12156.3 gi|257388733|ref|YP_003178506.1| - 0.011 16.3 1.2 0.021 15.3 0.8 1.5 1 0 0 1 1 1 0 Putative metal-binding domain of cation transport ATPase HTH_5 PF01022.15 gi|257388733|ref|YP_003178506.1| - 0.037 13.7 0.0 0.062 12.9 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|257388733|ref|YP_003178506.1| - 0.053 13.2 0.0 0.1 12.3 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF3921 PF13060.1 gi|257388733|ref|YP_003178506.1| - 0.086 12.7 0.0 0.19 11.6 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3921) A_deaminase PF00962.17 gi|257388733|ref|YP_003178506.1| - 0.11 11.3 0.0 0.13 11.2 0.0 1.1 1 0 0 1 1 1 0 Adenosine/AMP deaminase Peptidase_U9 PF03420.8 gi|257388733|ref|YP_003178506.1| - 0.12 11.6 0.0 0.15 11.3 0.0 1.2 1 0 0 1 1 1 0 Prohead core protein protease Fe_dep_repr_C PF02742.10 gi|257388734|ref|YP_003178507.1| - 5.9e-31 105.9 1.3 1.2e-30 104.9 0.9 1.6 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.14 gi|257388734|ref|YP_003178507.1| - 3.4e-19 68.5 0.2 1.8e-18 66.1 0.1 2.1 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain FeoA PF04023.9 gi|257388734|ref|YP_003178507.1| - 2.9e-14 52.7 1.6 1.6e-13 50.4 0.4 2.4 3 0 0 3 3 3 1 FeoA domain MarR PF01047.17 gi|257388734|ref|YP_003178507.1| - 2.3e-08 33.5 0.0 4.6e-08 32.6 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.2 gi|257388734|ref|YP_003178507.1| - 7.7e-07 28.6 0.0 3.7e-06 26.5 0.0 2.0 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.2 gi|257388734|ref|YP_003178507.1| - 1.6e-06 27.8 0.0 4.4e-06 26.3 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|257388734|ref|YP_003178507.1| - 5.6e-06 25.8 0.3 1.5e-05 24.4 0.0 1.9 2 0 0 2 2 2 1 IclR helix-turn-helix domain Rrf2 PF02082.15 gi|257388734|ref|YP_003178507.1| - 1.5e-05 25.0 0.0 3.6e-05 23.8 0.0 1.7 1 0 0 1 1 1 1 Transcriptional regulator HTH_27 PF13463.1 gi|257388734|ref|YP_003178507.1| - 1.8e-05 24.9 0.1 0.00022 21.4 0.0 2.4 2 0 0 2 2 2 1 Winged helix DNA-binding domain TrmB PF01978.14 gi|257388734|ref|YP_003178507.1| - 0.00096 18.8 0.0 0.0019 17.8 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.15 gi|257388734|ref|YP_003178507.1| - 0.0011 18.5 0.0 0.0033 17.0 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|257388734|ref|YP_003178507.1| - 0.0017 17.7 0.0 0.0029 16.9 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Topoisom_bac PF01131.15 gi|257388734|ref|YP_003178507.1| - 0.0063 15.3 0.0 0.0084 14.9 0.0 1.1 1 0 0 1 1 1 1 DNA topoisomerase HTH_34 PF13601.1 gi|257388734|ref|YP_003178507.1| - 0.017 15.1 0.0 0.033 14.1 0.0 1.6 1 1 0 1 1 1 0 Winged helix DNA-binding domain GntR PF00392.16 gi|257388734|ref|YP_003178507.1| - 0.022 14.1 0.1 0.094 12.1 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_Crp_2 PF13545.1 gi|257388734|ref|YP_003178507.1| - 0.026 14.3 0.0 0.053 13.3 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_11 PF08279.7 gi|257388734|ref|YP_003178507.1| - 0.028 14.0 0.0 0.055 13.1 0.0 1.4 1 0 0 1 1 1 0 HTH domain FeoC PF09012.5 gi|257388734|ref|YP_003178507.1| - 0.042 13.5 0.0 0.074 12.7 0.0 1.4 1 0 0 1 1 1 0 FeoC like transcriptional regulator HrcA_DNA-bdg PF03444.10 gi|257388734|ref|YP_003178507.1| - 0.11 11.9 0.0 0.18 11.2 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding DUF4423 PF14394.1 gi|257388734|ref|YP_003178507.1| - 0.14 11.6 0.0 0.2 11.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) CcoS PF03597.10 gi|257388735|ref|YP_003178508.1| - 0.011 15.2 1.0 0.019 14.3 0.7 1.4 1 0 0 1 1 1 0 Cytochrome oxidase maturation protein cbb3-type MTH865 PF07747.6 gi|257388736|ref|YP_003178509.1| - 3.2e-23 81.1 0.2 4.8e-23 80.5 0.1 1.2 1 0 0 1 1 1 1 MTH865-like family DJ-1_PfpI PF01965.19 gi|257388737|ref|YP_003178510.1| - 4.5e-38 129.9 0.0 5.5e-38 129.7 0.0 1.1 1 0 0 1 1 1 1 DJ-1/PfpI family DUF4066 PF13278.1 gi|257388737|ref|YP_003178510.1| - 2.7e-09 36.4 0.0 3.6e-09 36.1 0.0 1.2 1 0 0 1 1 1 1 Putative amidotransferase GATase PF00117.23 gi|257388737|ref|YP_003178510.1| - 0.00099 18.6 0.0 0.0014 18.0 0.0 1.4 1 1 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.9 gi|257388737|ref|YP_003178510.1| - 0.028 14.0 0.0 0.05 13.2 0.0 1.5 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain Hydrolase_6 PF13344.1 gi|257388738|ref|YP_003178511.1| - 1.2e-22 79.7 0.0 1.3e-20 73.1 0.0 2.3 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|257388738|ref|YP_003178511.1| - 1.3e-20 72.9 0.1 2.7e-20 71.8 0.1 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|257388738|ref|YP_003178511.1| - 1.7e-11 44.9 0.1 2.3e-11 44.5 0.1 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.1 gi|257388738|ref|YP_003178511.1| - 1.2e-08 35.3 0.4 8.8e-07 29.3 0.0 2.9 2 1 0 2 2 2 1 Haloacid dehalogenase-like hydrolase PGP_phosphatase PF09419.5 gi|257388738|ref|YP_003178511.1| - 0.007 15.7 0.0 0.034 13.5 0.0 1.9 2 0 0 2 2 2 1 Mitochondrial PGP phosphatase Response_reg PF00072.19 gi|257388739|ref|YP_003178512.1| - 1.3e-19 70.2 0.0 2.6e-19 69.3 0.0 1.5 1 0 0 1 1 1 1 Response regulator receiver domain HATPase_c PF02518.21 gi|257388739|ref|YP_003178512.1| - 3e-15 55.9 0.1 5.4e-15 55.0 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.20 gi|257388739|ref|YP_003178512.1| - 1.1e-13 51.0 1.7 2.4e-13 49.8 1.2 1.6 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.5 gi|257388739|ref|YP_003178512.1| - 7.2e-09 35.6 0.3 5e-08 32.9 0.1 2.4 2 0 0 2 2 2 1 PAS fold PAS PF00989.19 gi|257388739|ref|YP_003178512.1| - 2.6e-08 33.6 0.0 6.6e-08 32.3 0.0 1.8 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.1 gi|257388739|ref|YP_003178512.1| - 4.3e-05 23.2 0.1 0.00018 21.2 0.0 2.1 2 0 0 2 2 2 1 PAS domain PAS_9 PF13426.1 gi|257388739|ref|YP_003178512.1| - 5.7e-05 23.4 0.0 0.00026 21.3 0.0 2.3 1 1 0 1 1 1 1 PAS domain OKR_DC_1_N PF03709.10 gi|257388739|ref|YP_003178512.1| - 0.001 19.1 0.1 0.0033 17.4 0.0 1.9 2 0 0 2 2 2 1 Orn/Lys/Arg decarboxylase, N-terminal domain HATPase_c_3 PF13589.1 gi|257388739|ref|YP_003178512.1| - 0.0041 16.7 0.0 0.0081 15.8 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.1 gi|257388739|ref|YP_003178512.1| - 0.0047 16.6 0.0 0.013 15.2 0.0 1.7 1 0 0 1 1 1 1 GHKL domain SH2_2 PF14633.1 gi|257388739|ref|YP_003178512.1| - 0.052 12.5 0.1 0.099 11.6 0.1 1.4 1 0 0 1 1 1 0 SH2 domain ABC_tran PF00005.22 gi|257388741|ref|YP_003178514.1| - 1.4e-26 93.4 0.0 1.8e-26 93.0 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|257388741|ref|YP_003178514.1| - 2.9e-11 43.8 0.0 6.3e-06 26.3 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|257388741|ref|YP_003178514.1| - 3.1e-07 29.7 0.0 8e-05 21.8 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_23 PF13476.1 gi|257388741|ref|YP_003178514.1| - 0.0019 18.5 0.5 0.0029 17.9 0.4 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|257388741|ref|YP_003178514.1| - 0.012 15.0 0.7 0.022 14.2 0.5 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_28 PF13521.1 gi|257388741|ref|YP_003178514.1| - 0.013 15.4 1.1 0.054 13.4 0.6 2.1 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|257388741|ref|YP_003178514.1| - 0.016 15.2 0.4 0.031 14.2 0.2 1.8 1 1 0 1 1 1 0 AAA ATPase domain SbcCD_C PF13558.1 gi|257388741|ref|YP_003178514.1| - 0.02 14.8 0.0 0.034 14.0 0.0 1.4 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_33 PF13671.1 gi|257388741|ref|YP_003178514.1| - 0.02 14.7 0.1 0.065 13.1 0.1 1.9 1 1 0 1 1 1 0 AAA domain SMC_N PF02463.14 gi|257388741|ref|YP_003178514.1| - 0.044 13.0 0.0 0.71 9.0 0.0 2.0 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|257388741|ref|YP_003178514.1| - 0.067 13.3 0.0 0.11 12.6 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_13 PF13166.1 gi|257388741|ref|YP_003178514.1| - 0.069 11.5 0.1 2.8 6.2 0.2 2.0 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|257388741|ref|YP_003178514.1| - 0.099 12.4 0.1 0.3 10.8 0.1 1.8 1 0 0 1 1 1 0 Part of AAA domain AAA PF00004.24 gi|257388741|ref|YP_003178514.1| - 0.1 12.7 0.3 1.2 9.3 0.1 2.1 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_10 PF12846.2 gi|257388741|ref|YP_003178514.1| - 0.14 11.5 0.1 0.85 8.9 0.0 2.0 1 1 1 2 2 2 0 AAA-like domain SRP54 PF00448.17 gi|257388741|ref|YP_003178514.1| - 0.14 11.6 0.3 0.2 11.0 0.2 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_25 PF13481.1 gi|257388741|ref|YP_003178514.1| - 0.18 11.1 0.6 2.1 7.6 0.1 2.1 2 0 0 2 2 2 0 AAA domain DUF998 PF06197.8 gi|257388742|ref|YP_003178515.1| - 6.5e-22 77.7 31.8 8e-22 77.4 22.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF998) Fucose_iso_N1 PF07881.7 gi|257388742|ref|YP_003178515.1| - 0.16 11.5 1.4 0.32 10.5 0.3 1.8 1 1 1 2 2 2 0 L-fucose isomerase, first N-terminal domain DUF2071 PF09844.4 gi|257388743|ref|YP_003178516.1| - 1e-43 149.3 0.0 1.1e-43 149.1 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (COG2071) DUF2071 PF09844.4 gi|257388744|ref|YP_003178517.1| - 4.1e-70 235.5 0.0 4.6e-70 235.4 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (COG2071) ADC PF06314.6 gi|257388744|ref|YP_003178517.1| - 1.1e-05 24.8 0.0 1.5e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 Acetoacetate decarboxylase (ADC) Aldo_ket_red PF00248.16 gi|257388746|ref|YP_003178519.1| - 5.7e-74 248.4 0.0 6.3e-74 248.3 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family ABC2_membrane_3 PF12698.2 gi|257388747|ref|YP_003178520.1| - 5.8e-19 68.3 0.0 7.8e-19 67.8 0.0 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|257388747|ref|YP_003178520.1| - 5.7e-10 38.5 0.0 1.8e-09 36.8 0.0 1.7 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|257388747|ref|YP_003178520.1| - 7.6e-07 28.5 0.0 4.1e-06 26.1 0.0 2.1 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|257388747|ref|YP_003178520.1| - 0.00066 18.8 6.6 0.00066 18.8 4.6 1.9 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|257388748|ref|YP_003178521.1| - 1.9e-07 30.4 23.2 2.7e-07 29.9 14.9 2.1 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|257388748|ref|YP_003178521.1| - 0.00031 19.7 8.7 0.00031 19.7 6.0 3.3 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC_tran PF00005.22 gi|257388749|ref|YP_003178522.1| - 1.9e-28 99.4 0.0 3.1e-28 98.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|257388749|ref|YP_003178522.1| - 5.7e-15 56.0 0.0 4e-08 33.5 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_17 PF13207.1 gi|257388749|ref|YP_003178522.1| - 0.00079 20.2 0.1 0.0028 18.4 0.0 2.2 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|257388749|ref|YP_003178522.1| - 0.0012 18.3 0.2 0.0023 17.4 0.2 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|257388749|ref|YP_003178522.1| - 0.0012 19.1 0.0 0.002 18.4 0.0 1.3 1 0 0 1 1 1 1 AAA domain SRP54 PF00448.17 gi|257388749|ref|YP_003178522.1| - 0.0063 15.9 0.0 0.011 15.2 0.0 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_30 PF13604.1 gi|257388749|ref|YP_003178522.1| - 0.0073 15.9 0.1 0.017 14.7 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_18 PF13238.1 gi|257388749|ref|YP_003178522.1| - 0.019 15.2 0.9 1.1 9.5 0.6 2.3 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|257388749|ref|YP_003178522.1| - 0.042 13.9 0.2 0.14 12.3 0.2 1.9 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|257388749|ref|YP_003178522.1| - 0.046 13.5 0.2 0.3 10.9 0.1 2.2 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.1 gi|257388749|ref|YP_003178522.1| - 0.063 12.8 0.8 1.8 8.0 0.1 2.4 2 0 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|257388749|ref|YP_003178522.1| - 0.13 12.2 0.0 0.24 11.3 0.0 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_10 PF12846.2 gi|257388749|ref|YP_003178522.1| - 0.14 11.5 0.6 0.59 9.5 0.2 2.0 1 1 0 2 2 2 0 AAA-like domain AAA_19 PF13245.1 gi|257388749|ref|YP_003178522.1| - 0.14 11.9 0.3 0.48 10.2 0.1 1.9 2 0 0 2 2 2 0 Part of AAA domain DUF1195 PF06708.6 gi|257388749|ref|YP_003178522.1| - 0.15 11.5 0.2 0.37 10.1 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1195) Polyketide_cyc2 PF10604.4 gi|257388750|ref|YP_003178523.1| - 4.4e-10 39.8 4.9 1.7e-09 37.9 3.4 1.7 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.15 gi|257388750|ref|YP_003178523.1| - 9.1e-05 22.4 0.2 0.00012 22.0 0.1 1.2 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport DUF3047 PF11249.3 gi|257388750|ref|YP_003178523.1| - 0.059 12.7 0.0 0.068 12.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3047) Peripla_BP_2 PF01497.13 gi|257388751|ref|YP_003178524.1| - 8.8e-14 51.2 0.1 1.8e-13 50.1 0.1 1.6 1 1 0 1 1 1 1 Periplasmic binding protein TAT_signal PF10518.4 gi|257388751|ref|YP_003178524.1| - 0.097 12.7 0.0 0.2 11.7 0.0 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence zf-C2H2_6 PF13912.1 gi|257388752|ref|YP_003178525.1| - 0.00017 21.3 5.4 0.02 14.7 0.6 2.6 2 0 0 2 2 2 2 C2H2-type zinc finger zf-C2H2_jaz PF12171.3 gi|257388752|ref|YP_003178525.1| - 0.00024 21.1 0.6 0.046 13.8 0.1 2.4 2 0 0 2 2 2 1 Zinc-finger double-stranded RNA-binding zf-C2H2 PF00096.21 gi|257388752|ref|YP_003178525.1| - 0.0075 16.5 11.5 0.13 12.6 1.0 3.1 3 0 0 3 3 3 2 Zinc finger, C2H2 type Zn_ribbon_recom PF13408.1 gi|257388752|ref|YP_003178525.1| - 0.0078 16.4 0.4 0.028 14.6 0.1 1.9 2 0 0 2 2 2 1 Recombinase zinc beta ribbon domain FYVE PF01363.16 gi|257388752|ref|YP_003178525.1| - 0.045 13.6 3.6 0.049 13.5 2.5 1.2 1 0 0 1 1 1 0 FYVE zinc finger Zn-ribbon_8 PF09723.5 gi|257388752|ref|YP_003178525.1| - 0.17 11.8 9.8 0.58 10.1 1.8 2.7 2 1 1 3 3 3 0 Zinc ribbon domain zf-RING_2 PF13639.1 gi|257388752|ref|YP_003178525.1| - 0.2 11.5 3.5 0.32 10.8 2.4 1.4 1 1 0 1 1 1 0 Ring finger domain zf-dskA_traR PF01258.12 gi|257388752|ref|YP_003178525.1| - 0.25 11.1 3.8 1.5 8.6 0.3 2.5 2 0 0 2 2 2 0 Prokaryotic dksA/traR C4-type zinc finger DZR PF12773.2 gi|257388752|ref|YP_003178525.1| - 0.28 11.0 6.2 2.3 8.1 4.3 2.2 1 1 0 1 1 1 0 Double zinc ribbon zf-TRAF PF02176.13 gi|257388752|ref|YP_003178525.1| - 0.36 11.2 3.6 0.28 11.5 0.3 2.2 2 1 0 2 2 2 0 TRAF-type zinc finger zf-C3HC4_2 PF13923.1 gi|257388752|ref|YP_003178525.1| - 0.57 10.2 7.1 4.2 7.4 4.7 2.1 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zf-C2H2_4 PF13894.1 gi|257388752|ref|YP_003178525.1| - 0.68 10.3 9.0 0.4 11.1 1.1 2.7 2 1 0 2 2 2 0 C2H2-type zinc finger zinc-ribbons_6 PF07191.7 gi|257388752|ref|YP_003178525.1| - 1.7 8.4 6.2 0.69 9.7 1.9 2.2 1 1 0 1 1 1 0 zinc-ribbons C1_1 PF00130.17 gi|257388752|ref|YP_003178525.1| - 1.7 8.4 5.0 3.6 7.3 0.7 2.3 1 1 1 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Trm112p PF03966.11 gi|257388752|ref|YP_003178525.1| - 2.4 8.6 5.0 6.8 7.1 0.4 2.2 1 1 1 2 2 2 0 Trm112p-like protein zf-C2HC_2 PF13913.1 gi|257388752|ref|YP_003178525.1| - 2.4 7.9 5.7 0.83 9.3 0.3 2.5 2 0 0 2 2 2 0 zinc-finger of a C2HC-type HypA PF01155.14 gi|257388752|ref|YP_003178525.1| - 2.5 7.8 6.6 3.7 7.2 2.9 1.9 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family zf-H2C2_2 PF13465.1 gi|257388752|ref|YP_003178525.1| - 4 7.9 8.5 17 5.9 0.2 3.2 3 0 0 3 3 3 0 Zinc-finger double domain ADK_lid PF05191.9 gi|257388752|ref|YP_003178525.1| - 6.3 6.5 8.7 0.67 9.6 1.1 2.7 2 1 0 2 2 2 0 Adenylate kinase, active site lid zf-ribbon_3 PF13248.1 gi|257388752|ref|YP_003178525.1| - 8.6 5.7 9.2 3 7.1 3.0 2.6 2 1 0 2 2 2 0 zinc-ribbon domain CoA_binding PF02629.14 gi|257388753|ref|YP_003178526.1| - 2.7e-23 82.3 0.6 2.7e-23 82.3 0.4 1.9 3 0 0 3 3 3 1 CoA binding domain Ligase_CoA PF00549.14 gi|257388753|ref|YP_003178526.1| - 4.5e-14 52.3 0.3 8.5e-14 51.4 0.2 1.4 1 0 0 1 1 1 1 CoA-ligase Succ_CoA_lig PF13607.1 gi|257388753|ref|YP_003178526.1| - 3.3e-09 36.4 0.0 6.2e-09 35.5 0.0 1.4 1 0 0 1 1 1 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.1 gi|257388753|ref|YP_003178526.1| - 9.5e-07 28.9 0.1 6e-06 26.4 0.1 2.1 2 0 0 2 2 2 1 CoA binding domain ATP-grasp_2 PF08442.5 gi|257388754|ref|YP_003178527.1| - 5.2e-64 215.3 0.8 8e-64 214.7 0.5 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_5 PF13549.1 gi|257388754|ref|YP_003178527.1| - 2.2e-19 69.5 5.3 1.3e-18 67.0 2.8 2.4 2 1 0 2 2 2 1 ATP-grasp domain CPSase_L_D2 PF02786.12 gi|257388754|ref|YP_003178527.1| - 3.9e-14 52.4 1.5 3e-11 43.0 0.3 2.4 2 0 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain Ligase_CoA PF00549.14 gi|257388754|ref|YP_003178527.1| - 6.1e-14 51.8 0.8 1.5e-13 50.6 0.6 1.6 1 0 0 1 1 1 1 CoA-ligase ATP-grasp_4 PF13535.1 gi|257388754|ref|YP_003178527.1| - 4.2e-11 42.9 1.3 3e-10 40.1 0.2 2.2 2 0 0 2 2 2 1 ATP-grasp domain ATP-grasp PF02222.17 gi|257388754|ref|YP_003178527.1| - 4e-07 29.5 0.1 9.7e-07 28.2 0.0 1.6 1 0 0 1 1 1 1 ATP-grasp domain GARS_A PF01071.14 gi|257388754|ref|YP_003178527.1| - 2e-06 27.4 1.3 4.2e-06 26.4 0.1 1.9 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain RimK PF08443.6 gi|257388754|ref|YP_003178527.1| - 0.0042 16.5 0.0 0.011 15.2 0.0 1.7 2 0 0 2 2 2 1 RimK-like ATP-grasp domain ATPgrasp_Ter PF15632.1 gi|257388754|ref|YP_003178527.1| - 0.012 14.3 0.0 0.025 13.3 0.0 1.5 2 0 0 2 2 2 0 ATP-grasp in the biosynthetic pathway with Ter operon Dala_Dala_lig_C PF07478.8 gi|257388754|ref|YP_003178527.1| - 0.035 13.5 0.3 0.15 11.3 0.0 2.2 2 1 0 2 2 2 0 D-ala D-ala ligase C-terminus PemK PF02452.12 gi|257388755|ref|YP_003178528.1| - 4.7e-28 97.5 0.0 5.2e-28 97.4 0.0 1.0 1 0 0 1 1 1 1 PemK-like protein eIF-1a PF01176.14 gi|257388755|ref|YP_003178528.1| - 0.089 12.2 0.1 0.16 11.4 0.0 1.4 1 0 0 1 1 1 0 Translation initiation factor 1A / IF-1 Antitoxin-MazE PF04014.13 gi|257388756|ref|YP_003178529.1| - 1.4e-11 43.8 0.6 1.4e-11 43.8 0.4 1.5 2 0 0 2 2 2 1 Antidote-toxin recognition MazE SIR2 PF02146.12 gi|257388758|ref|YP_003178531.1| - 2e-44 151.4 0.0 2.5e-44 151.0 0.0 1.1 1 0 0 1 1 1 1 Sir2 family XPG_I PF00867.13 gi|257388758|ref|YP_003178531.1| - 0.12 12.3 0.0 0.29 11.2 0.0 1.6 1 0 0 1 1 1 0 XPG I-region Neurensin PF14927.1 gi|257388760|ref|YP_003178533.1| - 0.13 11.6 0.5 1.8 7.9 0.0 2.4 1 1 1 2 2 2 0 Neurensin T2SE PF00437.15 gi|257388761|ref|YP_003178534.1| - 4.7e-48 163.4 0.0 6.6e-48 162.9 0.0 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.1 gi|257388761|ref|YP_003178534.1| - 0.029 13.9 0.0 0.057 12.9 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain ABM PF03992.11 gi|257388761|ref|YP_003178534.1| - 0.04 13.9 0.2 0.15 12.1 0.1 1.9 1 0 0 1 1 1 0 Antibiotic biosynthesis monooxygenase RHH_1 PF01402.16 gi|257388761|ref|YP_003178534.1| - 0.092 12.6 0.2 0.092 12.6 0.1 3.1 3 0 0 3 3 3 0 Ribbon-helix-helix protein, copG family FtsK_SpoIIIE PF01580.13 gi|257388761|ref|YP_003178534.1| - 0.15 11.5 0.3 15 4.9 0.0 2.4 2 0 0 2 2 2 0 FtsK/SpoIIIE family T2SF PF00482.18 gi|257388762|ref|YP_003178535.1| - 1.1e-31 109.3 17.7 1.7e-21 76.4 1.8 3.1 3 0 0 3 3 3 2 Type II secretion system (T2SS), protein F DUF2207 PF09972.4 gi|257388762|ref|YP_003178535.1| - 0.14 10.6 0.4 1 7.8 0.0 2.4 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) MSP1_C PF07462.6 gi|257388762|ref|YP_003178535.1| - 0.17 10.2 0.2 0.25 9.7 0.2 1.1 1 0 0 1 1 1 0 Merozoite surface protein 1 (MSP1) C-terminus PAP_central PF04928.12 gi|257388762|ref|YP_003178535.1| - 0.26 10.0 0.0 0.37 9.5 0.0 1.2 1 0 0 1 1 1 0 Poly(A) polymerase central domain DUF1129 PF06570.6 gi|257388762|ref|YP_003178535.1| - 1 8.6 4.5 1.5 8.1 0.1 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF1129) DNA_ligase_A_M PF01068.16 gi|257388763|ref|YP_003178536.1| - 4e-48 163.4 0.0 5.5e-48 163.0 0.0 1.2 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.9 gi|257388763|ref|YP_003178536.1| - 1.7e-39 135.4 0.0 1.1e-37 129.5 0.0 2.2 1 1 1 2 2 2 2 DNA ligase N terminus DNA_ligase_A_C PF04679.10 gi|257388763|ref|YP_003178536.1| - 6.5e-16 58.5 0.0 1.6e-15 57.2 0.0 1.7 1 0 0 1 1 1 1 ATP dependent DNA ligase C terminal region Lactamase_B_3 PF13483.1 gi|257388764|ref|YP_003178537.1| - 2.9e-28 98.6 0.2 3.6e-28 98.3 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|257388764|ref|YP_003178537.1| - 0.031 13.8 1.4 0.12 11.8 1.0 1.9 1 1 0 1 1 1 0 Beta-lactamase superfamily domain DJ-1_PfpI PF01965.19 gi|257388765|ref|YP_003178538.1| - 7.2e-16 57.9 0.6 2.4e-15 56.2 0.4 1.9 1 1 0 1 1 1 1 DJ-1/PfpI family ThuA PF06283.6 gi|257388765|ref|YP_003178538.1| - 0.0045 16.7 0.0 0.0059 16.3 0.0 1.2 1 0 0 1 1 1 1 Trehalose utilisation DUF4066 PF13278.1 gi|257388765|ref|YP_003178538.1| - 0.0072 15.6 0.2 0.098 11.9 0.0 2.2 2 0 0 2 2 2 1 Putative amidotransferase LysE PF01810.13 gi|257388766|ref|YP_003178539.1| - 0.15 11.3 1.3 0.16 11.2 0.9 1.1 1 0 0 1 1 1 0 LysE type translocator TP6A_N PF04406.9 gi|257388767|ref|YP_003178540.1| - 3e-20 71.6 0.3 5.6e-20 70.7 0.2 1.4 1 0 0 1 1 1 1 Type IIB DNA topoisomerase Topo-VIb_trans PF09239.6 gi|257388768|ref|YP_003178541.1| - 2.1e-66 222.3 0.0 8.4e-66 220.4 0.0 2.1 2 0 0 2 2 2 1 Topoisomerase VI B subunit, transducer HATPase_c PF02518.21 gi|257388768|ref|YP_003178541.1| - 2.9e-16 59.1 0.1 1.2e-15 57.1 0.0 2.2 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|257388768|ref|YP_003178541.1| - 1.9e-13 50.2 0.0 4.8e-13 48.9 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.1 gi|257388768|ref|YP_003178541.1| - 0.0014 18.2 0.0 0.0042 16.7 0.0 1.8 1 0 0 1 1 1 1 GHKL domain HATPase_c_2 PF13581.1 gi|257388768|ref|YP_003178541.1| - 0.0029 17.3 0.0 0.0029 17.3 0.0 3.4 4 0 0 4 4 4 1 Histidine kinase-like ATPase domain MAF_flag10 PF01973.13 gi|257388768|ref|YP_003178541.1| - 0.023 14.2 0.0 0.051 13.0 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function DUF115 RP1-2 PF12042.3 gi|257388768|ref|YP_003178541.1| - 0.14 11.7 4.2 15 5.2 1.5 2.9 3 0 0 3 3 3 0 Tubuliform egg casing silk strands structural domain HK97-gp10_like PF04883.7 gi|257388768|ref|YP_003178541.1| - 1.8 9.5 8.8 7 7.6 1.2 4.2 2 2 0 2 2 2 0 Bacteriophage HK97-gp10, putative tail-component DNA_gyraseB PF00204.20 gi|257388769|ref|YP_003178542.1| - 1.2e-59 200.4 0.1 1.8e-59 199.8 0.0 1.3 1 0 0 1 1 1 1 DNA gyrase B DNA_gyraseB_C PF00986.16 gi|257388769|ref|YP_003178542.1| - 1.7e-29 101.3 0.0 3.4e-29 100.3 0.0 1.5 1 0 0 1 1 1 1 DNA gyrase B subunit, carboxyl terminus Toprim PF01751.17 gi|257388769|ref|YP_003178542.1| - 2.2e-23 82.1 0.0 8.8e-23 80.1 0.0 2.0 2 0 0 2 2 2 1 Toprim domain HATPase_c PF02518.21 gi|257388769|ref|YP_003178542.1| - 3.1e-20 71.9 0.0 5.9e-20 71.0 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.1 gi|257388769|ref|YP_003178542.1| - 2.2e-05 24.1 0.0 4.5e-05 23.1 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Toprim_4 PF13662.1 gi|257388769|ref|YP_003178542.1| - 0.063 13.2 0.0 0.2 11.6 0.0 1.8 1 0 0 1 1 1 0 Toprim domain DNA_topoisoIV PF00521.15 gi|257388770|ref|YP_003178543.1| - 1.4e-154 515.0 0.0 1.8e-154 514.6 0.0 1.1 1 0 0 1 1 1 1 DNA gyrase/topoisomerase IV, subunit A DNA_gyraseA_C PF03989.8 gi|257388770|ref|YP_003178543.1| - 2.7e-61 202.6 14.2 1.6e-14 52.8 0.3 6.7 7 0 0 7 7 7 6 DNA gyrase C-terminal domain, beta-propeller PilJ PF13675.1 gi|257388770|ref|YP_003178543.1| - 0.067 13.5 3.0 0.16 12.3 1.4 2.1 1 1 1 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term PspB PF06667.7 gi|257388770|ref|YP_003178543.1| - 1.8 8.5 5.2 17 5.4 0.4 2.5 2 0 0 2 2 2 0 Phage shock protein B NAD_binding_1 PF00175.16 gi|257388771|ref|YP_003178544.1| - 3.1e-17 63.1 0.0 4e-15 56.3 0.0 2.2 1 1 0 1 1 1 1 Oxidoreductase NAD-binding domain FAD_binding_6 PF00970.19 gi|257388771|ref|YP_003178544.1| - 5.4e-16 58.5 0.0 9.5e-16 57.7 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain NAD_binding_6 PF08030.7 gi|257388771|ref|YP_003178544.1| - 0.02 14.7 0.0 0.1 12.5 0.0 1.9 2 0 0 2 2 2 0 Ferric reductase NAD binding domain GlcNAc_2-epim PF07221.6 gi|257388772|ref|YP_003178545.1| - 6.8e-98 327.8 7.8 8.5e-98 327.5 5.4 1.2 1 0 0 1 1 1 1 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) Arginase PF00491.16 gi|257388773|ref|YP_003178546.1| - 3.2e-77 259.5 2.2 3.8e-77 259.2 1.5 1.0 1 0 0 1 1 1 1 Arginase family HrcA_DNA-bdg PF03444.10 gi|257388774|ref|YP_003178547.1| - 2.7e-39 132.4 0.1 3.7e-39 132.0 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Rrf2 PF02082.15 gi|257388774|ref|YP_003178547.1| - 9.6e-08 32.0 0.0 2e-07 31.0 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator HTH_11 PF08279.7 gi|257388774|ref|YP_003178547.1| - 6.8e-07 28.8 0.0 1.1e-06 28.2 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_38 PF13936.1 gi|257388774|ref|YP_003178547.1| - 0.00089 18.7 0.0 0.0022 17.4 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain Phage_terminase PF10668.4 gi|257388774|ref|YP_003178547.1| - 0.0035 17.1 0.0 0.0065 16.2 0.0 1.4 1 0 0 1 1 1 1 Phage terminase small subunit TrmB PF01978.14 gi|257388774|ref|YP_003178547.1| - 0.0087 15.7 0.0 0.014 15.1 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|257388774|ref|YP_003178547.1| - 0.057 13.2 0.0 0.1 12.3 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Peptidase_S8 PF00082.17 gi|257388775|ref|YP_003178548.1| - 3.7e-51 173.9 8.0 3.7e-51 173.9 5.6 1.7 2 0 0 2 2 2 1 Subtilase family CBM_5_12 PF02839.9 gi|257388775|ref|YP_003178548.1| - 1.5e-27 94.9 30.3 7.5e-14 51.0 7.6 2.9 2 0 0 2 2 2 2 Carbohydrate binding domain CBM_5_12_2 PF14600.1 gi|257388775|ref|YP_003178548.1| - 0.00034 20.1 10.3 0.0066 16.0 1.2 3.4 3 0 0 3 3 3 2 Cellulose-binding domain Pyr_redox_2 PF07992.9 gi|257388776|ref|YP_003178549.1| - 9.1e-19 68.1 0.0 2.2e-18 66.8 0.0 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.22 gi|257388776|ref|YP_003178549.1| - 4.5e-08 33.3 2.5 6.3e-07 29.7 0.1 2.6 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|257388776|ref|YP_003178549.1| - 3.7e-07 30.4 0.2 0.012 15.6 0.0 3.0 3 1 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.1 gi|257388776|ref|YP_003178549.1| - 0.00051 19.8 1.1 1.5 8.5 0.0 3.3 3 0 0 3 3 3 2 FAD-NAD(P)-binding AlaDh_PNT_C PF01262.16 gi|257388776|ref|YP_003178549.1| - 0.13 11.8 1.9 4.6 6.7 0.1 2.3 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain PNP_UDP_1 PF01048.15 gi|257388778|ref|YP_003178551.1| - 2.2e-47 161.0 1.2 2.6e-47 160.7 0.8 1.1 1 0 0 1 1 1 1 Phosphorylase superfamily Acyl-CoA_dh_N PF02771.11 gi|257388778|ref|YP_003178551.1| - 0.0032 18.0 0.2 0.019 15.5 0.0 2.2 1 1 2 3 3 3 1 Acyl-CoA dehydrogenase, N-terminal domain dCMP_cyt_deam_1 PF00383.17 gi|257388779|ref|YP_003178552.1| - 4.8e-16 58.2 0.3 5.7e-16 58.0 0.2 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region dCMP_cyt_deam_2 PF08211.6 gi|257388779|ref|YP_003178552.1| - 3.1e-13 49.8 0.6 4e-13 49.4 0.4 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region YwqJ-deaminase PF14431.1 gi|257388779|ref|YP_003178552.1| - 0.11 12.4 0.3 0.32 10.8 0.2 1.7 1 1 1 2 2 2 0 YwqJ-like deaminase LmjF365940-deam PF14421.1 gi|257388779|ref|YP_003178552.1| - 0.48 9.7 2.4 3.1 7.1 0.1 2.0 1 1 1 2 2 2 0 A distinct subfamily of CDD/CDA-like deaminases PGM_PMM_I PF02878.11 gi|257388780|ref|YP_003178553.1| - 1.2e-31 108.9 0.0 2.9e-31 107.7 0.0 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.11 gi|257388780|ref|YP_003178553.1| - 3.4e-21 75.5 0.7 1.6e-20 73.3 0.4 2.0 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.15 gi|257388780|ref|YP_003178553.1| - 6.7e-11 42.0 0.1 4.1e-10 39.5 0.0 2.3 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain PGM_PMM_III PF02880.11 gi|257388780|ref|YP_003178553.1| - 0.00013 21.9 0.0 0.00032 20.7 0.0 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DUF664 PF04978.7 gi|257388780|ref|YP_003178553.1| - 0.036 14.3 2.0 1.7 8.9 0.5 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF664) DUF555 PF04475.7 gi|257388782|ref|YP_003178555.1| - 3.4e-49 165.0 0.2 3.9e-49 164.8 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF555) Dodecin PF07311.7 gi|257388782|ref|YP_003178555.1| - 0.12 12.3 0.4 0.57 10.2 0.1 2.0 2 0 0 2 2 2 0 Dodecin zinc_ribbon_2 PF13240.1 gi|257388782|ref|YP_003178555.1| - 0.13 11.8 0.2 0.19 11.2 0.1 1.3 1 0 0 1 1 1 0 zinc-ribbon domain CBS PF00571.23 gi|257388783|ref|YP_003178556.1| - 8.9e-19 67.0 3.5 6.8e-11 41.7 0.0 2.5 2 0 0 2 2 2 2 CBS domain HTH_31 PF13560.1 gi|257388783|ref|YP_003178556.1| - 1.2e-12 47.7 0.4 2.1e-12 47.0 0.3 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.17 gi|257388783|ref|YP_003178556.1| - 6.6e-11 41.8 0.1 1.1e-10 41.2 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.2 gi|257388783|ref|YP_003178556.1| - 1.4e-09 37.8 0.0 2.4e-09 37.1 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.1 gi|257388783|ref|YP_003178556.1| - 0.00014 21.4 0.3 0.00037 20.0 0.1 1.8 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_37 PF13744.1 gi|257388783|ref|YP_003178556.1| - 0.0016 18.2 0.0 0.0028 17.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.1 gi|257388783|ref|YP_003178556.1| - 0.011 15.9 0.0 0.017 15.2 0.0 1.4 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain HTH_24 PF13412.1 gi|257388783|ref|YP_003178556.1| - 0.08 12.3 0.2 3 7.3 0.0 2.3 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding AIRS_C PF02769.17 gi|257388785|ref|YP_003178558.1| - 9.9e-20 71.0 0.0 1.6e-19 70.4 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.19 gi|257388785|ref|YP_003178558.1| - 1.3e-17 63.8 0.7 3.1e-17 62.6 0.5 1.7 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain Peptidase_M50 PF02163.17 gi|257388786|ref|YP_003178559.1| - 7.9e-11 41.2 19.4 2.4e-09 36.4 13.4 2.3 1 1 0 1 1 1 1 Peptidase family M50 TraB PF01963.12 gi|257388787|ref|YP_003178560.1| - 5.8e-42 143.9 0.0 1.9e-25 89.8 0.0 2.7 3 0 0 3 3 3 2 TraB family DUF399 PF04187.8 gi|257388787|ref|YP_003178560.1| - 0.12 11.8 0.1 0.3 10.5 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function, DUF399 PadR PF03551.9 gi|257388788|ref|YP_003178561.1| - 1.2e-16 60.2 0.4 1.4e-16 59.9 0.3 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|257388788|ref|YP_003178561.1| - 0.0002 21.5 0.0 0.00026 21.2 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|257388788|ref|YP_003178561.1| - 0.0027 17.4 0.1 0.0037 17.0 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DUF1495 PF07381.6 gi|257388788|ref|YP_003178561.1| - 0.018 14.7 0.1 0.022 14.3 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) TrmB PF01978.14 gi|257388788|ref|YP_003178561.1| - 0.023 14.3 0.1 0.03 14.0 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Penicillinase_R PF03965.11 gi|257388788|ref|YP_003178561.1| - 0.049 13.7 0.1 0.056 13.5 0.0 1.3 1 0 0 1 1 1 0 Penicillinase repressor HTH_34 PF13601.1 gi|257388788|ref|YP_003178561.1| - 0.05 13.6 0.0 0.061 13.3 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR_2 PF12802.2 gi|257388788|ref|YP_003178561.1| - 0.069 12.8 0.1 4.7 6.9 0.0 2.3 2 0 0 2 2 2 0 MarR family DUF4364 PF14277.1 gi|257388788|ref|YP_003178561.1| - 0.074 12.6 0.0 0.089 12.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) zinc_ribbon_2 PF13240.1 gi|257388790|ref|YP_003178563.1| - 0.025 14.0 0.6 0.58 9.7 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.1 gi|257388790|ref|YP_003178563.1| - 0.031 13.4 0.3 0.92 8.7 0.0 2.1 2 0 0 2 2 2 0 zinc-ribbon domain STT3 PF02516.9 gi|257388791|ref|YP_003178564.1| - 4.1e-25 88.6 16.2 4.1e-25 88.6 11.3 1.7 2 0 0 2 2 2 1 Oligosaccharyl transferase STT3 subunit Glycos_transf_2 PF00535.21 gi|257388792|ref|YP_003178565.1| - 2.4e-24 85.8 0.0 3.1e-24 85.5 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|257388792|ref|YP_003178565.1| - 2e-15 57.2 1.6 7e-15 55.4 1.1 1.8 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|257388792|ref|YP_003178565.1| - 4.7e-06 25.8 0.1 9.8e-06 24.8 0.0 1.5 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.1 gi|257388792|ref|YP_003178565.1| - 0.0035 16.6 0.0 0.011 15.0 0.0 1.8 1 1 0 1 1 1 1 Glycosyl transferase family 21 Glyco_trans_2_3 PF13632.1 gi|257388792|ref|YP_003178565.1| - 0.012 15.3 1.1 0.061 13.0 0.8 2.1 1 1 0 1 1 1 0 Glycosyl transferase family group 2 Glyco_tranf_2_5 PF13712.1 gi|257388792|ref|YP_003178565.1| - 0.039 13.1 0.0 0.11 11.7 0.0 1.6 2 0 0 2 2 2 0 Glycosyltransferase like family Glyco_transf_7C PF02709.9 gi|257388792|ref|YP_003178565.1| - 0.089 12.2 0.1 0.28 10.6 0.1 1.8 1 1 0 1 1 1 0 N-terminal domain of galactosyltransferase Glycos_transf_1 PF00534.15 gi|257388793|ref|YP_003178566.1| - 2.6e-30 105.1 0.0 3.7e-30 104.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|257388793|ref|YP_003178566.1| - 1.1e-17 64.3 0.4 7.4e-17 61.7 0.0 2.2 2 1 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|257388793|ref|YP_003178566.1| - 1.8e-09 37.7 0.0 4.4e-09 36.4 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|257388793|ref|YP_003178566.1| - 3.1e-06 27.4 7.6 3.1e-06 27.4 5.3 2.3 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Sulfatase PF00884.18 gi|257388794|ref|YP_003178567.1| - 5.5e-33 114.4 0.0 8.1e-33 113.9 0.0 1.2 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|257388794|ref|YP_003178567.1| - 7.5e-12 45.2 0.2 2.6e-06 27.0 0.0 2.3 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF229 PF02995.12 gi|257388794|ref|YP_003178567.1| - 3e-05 22.6 0.0 0.00032 19.2 0.0 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF229) DUF1501 PF07394.7 gi|257388794|ref|YP_003178567.1| - 5.2e-05 22.2 0.1 8.3e-05 21.5 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1501) NPBW PF15180.1 gi|257388794|ref|YP_003178567.1| - 0.041 13.5 0.0 0.078 12.6 0.0 1.4 1 0 0 1 1 1 0 Neuropeptides B and W Biotin_carb_C PF02785.14 gi|257388794|ref|YP_003178567.1| - 0.09 12.7 0.0 0.25 11.3 0.0 1.7 1 0 0 1 1 1 0 Biotin carboxylase C-terminal domain Polysacc_synt_3 PF13440.1 gi|257388795|ref|YP_003178568.1| - 4.7e-23 81.9 23.2 4.7e-23 81.9 16.1 2.5 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt PF01943.12 gi|257388795|ref|YP_003178568.1| - 1.2e-21 77.1 27.1 1.5e-21 76.8 10.0 2.3 2 0 0 2 2 2 2 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|257388795|ref|YP_003178568.1| - 8.2e-21 74.3 16.5 8.2e-21 74.3 11.5 3.6 2 1 2 4 4 4 1 Polysaccharide biosynthesis C-terminal domain MatE PF01554.13 gi|257388795|ref|YP_003178568.1| - 1.1e-08 34.8 2.6 1.1e-08 34.8 1.8 3.5 3 1 0 3 3 3 2 MatE MVIN PF03023.9 gi|257388795|ref|YP_003178568.1| - 4.1e-08 32.0 15.6 9e-08 30.9 10.5 1.8 1 1 0 1 1 1 1 MviN-like protein Glycos_transf_1 PF00534.15 gi|257388796|ref|YP_003178569.1| - 6.5e-43 146.1 0.0 1e-42 145.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|257388796|ref|YP_003178569.1| - 9.8e-26 90.5 0.3 2.7e-25 89.0 0.1 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|257388796|ref|YP_003178569.1| - 1.2e-16 60.7 0.1 3.5e-16 59.2 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|257388796|ref|YP_003178569.1| - 2.5e-06 27.3 0.2 9e-06 25.5 0.0 2.0 2 1 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.1 gi|257388796|ref|YP_003178569.1| - 1.1e-05 25.6 0.2 1.1e-05 25.6 0.1 2.5 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glycos_transf_1 PF00534.15 gi|257388797|ref|YP_003178570.1| - 9.7e-39 132.5 0.0 1.7e-38 131.7 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|257388797|ref|YP_003178570.1| - 3.7e-18 66.1 0.3 3.7e-18 66.1 0.2 2.1 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_4 PF13692.1 gi|257388797|ref|YP_003178570.1| - 9.6e-18 64.6 0.2 1.9e-17 63.7 0.1 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|257388797|ref|YP_003178570.1| - 1e-13 51.3 0.0 2.4e-13 50.1 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|257388797|ref|YP_003178570.1| - 1.6e-11 44.2 0.0 3.1e-11 43.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_2 PF13477.1 gi|257388797|ref|YP_003178570.1| - 8.8e-09 35.3 0.0 1.3e-08 34.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like Lactamase_B_3 PF13483.1 gi|257388798|ref|YP_003178571.1| - 8.2e-23 80.8 0.7 1.1e-22 80.5 0.5 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.2 gi|257388798|ref|YP_003178571.1| - 2e-15 56.8 0.2 2.6e-15 56.4 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.22 gi|257388798|ref|YP_003178571.1| - 1.3e-07 31.4 10.3 2.5e-07 30.5 7.1 1.5 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily NAD_binding_2 PF03446.10 gi|257388799|ref|YP_003178572.1| - 7.2e-42 142.9 0.1 1e-41 142.4 0.1 1.2 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.1 gi|257388799|ref|YP_003178572.1| - 3.5e-27 94.8 0.3 5.7e-27 94.2 0.2 1.3 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 2-Hacid_dh_C PF02826.14 gi|257388799|ref|YP_003178572.1| - 1.5e-05 24.2 0.0 2.3e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ApbA PF02558.11 gi|257388799|ref|YP_003178572.1| - 0.00019 20.8 0.0 0.00036 20.0 0.0 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA IlvN PF07991.7 gi|257388799|ref|YP_003178572.1| - 0.00093 18.5 0.0 0.0014 18.0 0.0 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain F420_oxidored PF03807.12 gi|257388799|ref|YP_003178572.1| - 0.0012 19.2 0.0 0.0025 18.2 0.0 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.15 gi|257388799|ref|YP_003178572.1| - 0.01 15.9 0.0 0.022 14.8 0.0 1.5 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase 3HCDH_N PF02737.13 gi|257388799|ref|YP_003178572.1| - 0.086 12.4 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IF-2B PF01008.12 gi|257388801|ref|YP_003178574.1| - 3e-73 246.2 0.3 3.5e-73 246.0 0.2 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family Toxin_51 PF15531.1 gi|257388801|ref|YP_003178574.1| - 0.018 14.8 0.0 0.047 13.4 0.0 1.7 1 0 0 1 1 1 0 Putative toxin 51 Ribosomal_S2 PF00318.15 gi|257388801|ref|YP_003178574.1| - 0.16 11.1 0.0 0.27 10.4 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein S2 PRP4 PF08799.6 gi|257388801|ref|YP_003178574.1| - 0.31 10.3 1.5 1 8.7 0.1 2.5 2 0 0 2 2 2 0 pre-mRNA processing factor 4 (PRP4) like PfkB PF00294.19 gi|257388803|ref|YP_003178576.1| - 6.4e-41 140.4 4.0 9.1e-41 139.9 2.8 1.2 1 0 0 1 1 1 1 pfkB family carbohydrate kinase FAD_binding_3 PF01494.14 gi|257388803|ref|YP_003178576.1| - 0.029 13.4 0.0 0.049 12.6 0.0 1.3 1 0 0 1 1 1 0 FAD binding domain APH PF01636.18 gi|257388804|ref|YP_003178577.1| - 3.7e-19 69.4 5.0 3.7e-19 69.4 3.4 1.4 2 0 0 2 2 2 1 Phosphotransferase enzyme family Fructosamin_kin PF03881.9 gi|257388804|ref|YP_003178577.1| - 5.5e-08 32.1 0.0 2e-07 30.3 0.0 1.7 1 1 0 1 1 1 1 Fructosamine kinase DUF3732 PF12532.3 gi|257388804|ref|YP_003178577.1| - 0.067 12.7 0.0 0.12 11.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3732) Kdo PF06293.9 gi|257388804|ref|YP_003178577.1| - 0.07 12.1 0.0 0.19 10.7 0.0 1.7 2 0 0 2 2 2 0 Lipopolysaccharide kinase (Kdo/WaaP) family RuBisCO_large PF00016.15 gi|257388805|ref|YP_003178578.1| - 5.1e-66 222.6 0.6 4.7e-64 216.1 0.4 2.1 1 1 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, catalytic domain RuBisCO_large_N PF02788.11 gi|257388805|ref|YP_003178578.1| - 5.3e-20 71.3 0.0 1.3e-19 70.1 0.0 1.6 1 0 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, N-terminal domain AP_endonuc_2 PF01261.19 gi|257388805|ref|YP_003178578.1| - 0.039 13.2 0.5 0.083 12.1 0.3 1.7 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel adh_short PF00106.20 gi|257388806|ref|YP_003178579.1| - 5.9e-38 130.3 6.1 8.8e-38 129.8 4.2 1.3 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|257388806|ref|YP_003178579.1| - 4.2e-30 105.2 0.1 5.7e-30 104.8 0.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|257388806|ref|YP_003178579.1| - 1.1e-13 51.2 3.5 1.6e-13 50.7 2.5 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|257388806|ref|YP_003178579.1| - 5.4e-05 22.7 1.3 0.00017 21.1 0.9 1.7 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.1 gi|257388806|ref|YP_003178579.1| - 0.0012 18.8 4.2 0.0022 18.0 2.9 1.4 1 1 0 1 1 1 1 NADH(P)-binding Polysacc_synt_2 PF02719.10 gi|257388806|ref|YP_003178579.1| - 0.0063 15.4 0.0 0.011 14.7 0.0 1.4 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.14 gi|257388806|ref|YP_003178579.1| - 0.086 11.5 0.2 0.12 11.0 0.1 1.1 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family Eno-Rase_NADH_b PF12242.3 gi|257388806|ref|YP_003178579.1| - 0.086 12.6 0.1 0.2 11.4 0.0 1.6 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase Bac_luciferase PF00296.15 gi|257388807|ref|YP_003178580.1| - 5.9e-75 252.2 2.5 6.8e-75 252.0 1.8 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase zf-C2H2_4 PF13894.1 gi|257388808|ref|YP_003178581.1| - 0.00017 21.6 0.8 0.00023 21.2 0.6 1.2 1 0 0 1 1 1 1 C2H2-type zinc finger zf-C2H2 PF00096.21 gi|257388808|ref|YP_003178581.1| - 0.0003 20.9 0.8 0.00036 20.7 0.6 1.2 1 0 0 1 1 1 1 Zinc finger, C2H2 type zf-C2HC_2 PF13913.1 gi|257388808|ref|YP_003178581.1| - 0.038 13.6 2.2 0.048 13.3 1.5 1.1 1 0 0 1 1 1 0 zinc-finger of a C2HC-type zf-C2H2_2 PF12756.2 gi|257388808|ref|YP_003178581.1| - 0.043 13.9 0.2 0.044 13.8 0.1 1.0 1 0 0 1 1 1 0 C2H2 type zinc-finger (2 copies) zf-DBF PF07535.7 gi|257388808|ref|YP_003178581.1| - 0.043 13.4 0.1 0.051 13.2 0.1 1.2 1 0 0 1 1 1 0 DBF zinc finger zf-C2H2_6 PF13912.1 gi|257388808|ref|YP_003178581.1| - 0.055 13.3 0.4 0.07 13.0 0.3 1.2 1 0 0 1 1 1 0 C2H2-type zinc finger zf-met PF12874.2 gi|257388808|ref|YP_003178581.1| - 0.068 13.3 0.1 0.079 13.1 0.1 1.1 1 0 0 1 1 1 0 Zinc-finger of C2H2 type zf-C2H2_jaz PF12171.3 gi|257388808|ref|YP_003178581.1| - 0.094 12.8 0.1 0.11 12.6 0.1 1.1 1 0 0 1 1 1 0 Zinc-finger double-stranded RNA-binding FYVE PF01363.16 gi|257388808|ref|YP_003178581.1| - 0.096 12.5 0.5 0.096 12.5 0.3 1.1 1 0 0 1 1 1 0 FYVE zinc finger MAF_flag10 PF01973.13 gi|257388809|ref|YP_003178582.1| - 1e-20 73.9 0.0 1.3e-20 73.6 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF115 Dehydratase_LU PF02286.10 gi|257388809|ref|YP_003178582.1| - 0.047 11.9 0.0 0.062 11.5 0.0 1.1 1 0 0 1 1 1 0 Dehydratase large subunit Pterin_bind PF00809.17 gi|257388810|ref|YP_003178583.1| - 1.5e-30 106.1 0.0 2e-30 105.7 0.0 1.2 1 0 0 1 1 1 1 Pterin binding enzyme DZR PF12773.2 gi|257388811|ref|YP_003178584.1| - 5.3e-06 26.1 1.2 7.6e-06 25.6 0.8 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|257388811|ref|YP_003178584.1| - 1.6e-05 23.9 2.1 2.3e-05 23.4 1.5 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|257388811|ref|YP_003178584.1| - 0.00076 18.8 2.4 0.0011 18.3 1.6 1.3 1 0 0 1 1 1 1 zinc-ribbon domain CcmD PF04995.9 gi|257388811|ref|YP_003178584.1| - 0.016 14.9 1.5 0.024 14.3 1.1 1.3 1 0 0 1 1 1 0 Heme exporter protein D (CcmD) Nudix_N_2 PF14803.1 gi|257388811|ref|YP_003178584.1| - 0.046 13.3 0.9 2.7 7.7 0.0 2.3 2 0 0 2 2 2 0 Nudix N-terminal DUF2029 PF09594.5 gi|257388811|ref|YP_003178584.1| - 0.074 12.5 0.7 0.076 12.4 0.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2029) GFA PF04828.9 gi|257388811|ref|YP_003178584.1| - 0.2 11.6 1.1 1.1 9.2 0.8 2.0 1 1 0 1 1 1 0 Glutathione-dependent formaldehyde-activating enzyme RNA_POL_M_15KD PF02150.11 gi|257388811|ref|YP_003178584.1| - 0.28 10.9 2.4 1.7 8.4 0.2 2.1 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit VPEP PF07589.6 gi|257388811|ref|YP_003178584.1| - 0.7 9.8 3.3 1.4 8.8 2.3 1.5 1 0 0 1 1 1 0 PEP-CTERM motif A2L_zn_ribbon PF08792.5 gi|257388811|ref|YP_003178584.1| - 3.4 7.2 6.3 13 5.3 4.4 1.8 1 1 0 1 1 1 0 A2L zinc ribbon domain SpoU_methylase PF00588.14 gi|257388813|ref|YP_003178586.1| - 1.8e-28 99.2 0.0 2.7e-28 98.6 0.0 1.3 1 0 0 1 1 1 1 SpoU rRNA Methylase family DICT PF10069.4 gi|257388814|ref|YP_003178587.1| - 2.3e-19 69.2 0.0 4e-19 68.4 0.0 1.4 1 0 0 1 1 1 1 Sensory domain found in DIguanylate Cyclases & Two-component systems KaiC PF06745.8 gi|257388814|ref|YP_003178587.1| - 0.0022 17.1 0.0 0.027 13.5 0.0 2.2 1 1 0 1 1 1 1 KaiC GatB_N PF02934.10 gi|257388815|ref|YP_003178588.1| - 2.4e-73 246.5 0.0 3.7e-73 245.9 0.0 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|257388815|ref|YP_003178588.1| - 5.9e-23 81.2 0.0 1.4e-22 79.9 0.0 1.7 2 0 0 2 2 2 1 GatB domain GAD PF02938.9 gi|257388815|ref|YP_003178588.1| - 3.5e-15 55.9 0.0 6.6e-15 55.0 0.0 1.5 1 0 0 1 1 1 1 GAD domain YqeY PF09424.5 gi|257388815|ref|YP_003178588.1| - 0.0033 17.2 0.3 0.0062 16.3 0.2 1.4 1 0 0 1 1 1 1 Yqey-like protein Lyase_1 PF00206.15 gi|257388817|ref|YP_003178590.1| - 1.1e-109 366.3 0.2 1.8e-109 365.7 0.1 1.3 1 0 0 1 1 1 1 Lyase FumaraseC_C PF10415.4 gi|257388817|ref|YP_003178590.1| - 5e-25 87.3 0.5 1.4e-24 85.9 0.4 1.8 1 0 0 1 1 1 1 Fumarase C C-terminus ADSL_C PF10397.4 gi|257388817|ref|YP_003178590.1| - 0.23 11.4 2.2 0.44 10.5 0.2 2.6 3 1 0 3 3 3 0 Adenylosuccinate lyase C-terminus XPG_I PF00867.13 gi|257388818|ref|YP_003178591.1| - 2.3e-23 82.0 0.4 5.4e-23 80.8 0.0 1.8 2 0 0 2 2 2 1 XPG I-region XPG_N PF00752.12 gi|257388818|ref|YP_003178591.1| - 5.8e-13 48.9 0.0 9.6e-13 48.2 0.0 1.3 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.15 gi|257388818|ref|YP_003178591.1| - 1e-06 28.8 0.0 2.3e-06 27.7 0.0 1.6 1 0 0 1 1 1 1 5'-3' exonuclease, C-terminal SAM fold Lar_restr_allev PF14354.1 gi|257388819|ref|YP_003178592.1| - 0.36 11.1 5.3 1.1 9.6 3.7 1.8 1 0 0 1 1 1 0 Restriction alleviation protein Lar Prim_Zn_Ribbon PF08273.7 gi|257388819|ref|YP_003178592.1| - 5.5 7.1 7.2 7.1 6.7 0.0 2.7 2 1 0 2 2 2 0 Zinc-binding domain of primase-helicase Acetyltransf_1 PF00583.19 gi|257388820|ref|YP_003178593.1| - 1.8e-07 31.0 0.0 3e-07 30.3 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|257388820|ref|YP_003178593.1| - 1e-05 25.5 0.0 1.9e-05 24.7 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|257388820|ref|YP_003178593.1| - 0.00042 20.4 0.0 0.00064 19.8 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|257388820|ref|YP_003178593.1| - 0.081 12.8 0.0 0.13 12.1 0.0 1.3 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase DZR PF12773.2 gi|257388821|ref|YP_003178594.1| - 0.0037 17.0 1.4 0.0042 16.8 1.0 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-IS66 PF13005.2 gi|257388821|ref|YP_003178594.1| - 0.0045 16.9 2.0 0.054 13.4 0.1 2.1 2 0 0 2 2 2 1 zinc-finger binding domain of transposase IS66 Tnp_zf-ribbon_2 PF13842.1 gi|257388821|ref|YP_003178594.1| - 0.0092 16.3 1.4 0.013 15.9 1.0 1.2 1 0 0 1 1 1 1 DDE_Tnp_1-like zinc-ribbon zf-UBR PF02207.15 gi|257388821|ref|YP_003178594.1| - 0.01 15.5 0.6 0.011 15.3 0.4 1.1 1 0 0 1 1 1 0 Putative zinc finger in N-recognin (UBR box) zinc_ribbon_2 PF13240.1 gi|257388821|ref|YP_003178594.1| - 0.013 14.9 1.9 0.017 14.6 1.3 1.2 1 0 0 1 1 1 0 zinc-ribbon domain DUF1272 PF06906.6 gi|257388821|ref|YP_003178594.1| - 0.024 14.4 0.9 0.025 14.4 0.6 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) HypA PF01155.14 gi|257388821|ref|YP_003178594.1| - 0.042 13.5 1.5 0.042 13.5 1.0 1.0 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-TFIIB PF13453.1 gi|257388821|ref|YP_003178594.1| - 0.071 12.3 1.5 3.6 6.8 0.1 2.1 2 0 0 2 2 2 0 Transcription factor zinc-finger Zn-ribbon_8 PF09723.5 gi|257388821|ref|YP_003178594.1| - 0.085 12.8 4.6 0.15 12.0 3.2 1.5 1 1 0 1 1 1 0 Zinc ribbon domain NOB1_Zn_bind PF08772.6 gi|257388821|ref|YP_003178594.1| - 0.095 12.5 1.0 0.1 12.4 0.7 1.1 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like YhfH PF14149.1 gi|257388821|ref|YP_003178594.1| - 0.1 12.4 3.9 0.7 9.7 0.2 2.1 1 1 1 2 2 2 0 YhfH-like protein PolC_DP2 PF03833.8 gi|257388821|ref|YP_003178594.1| - 0.14 9.8 0.6 0.14 9.8 0.4 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 XPA_N PF01286.13 gi|257388821|ref|YP_003178594.1| - 0.14 11.8 1.7 7.9 6.2 0.1 2.1 2 0 0 2 2 2 0 XPA protein N-terminal Zn_Tnp_IS91 PF14319.1 gi|257388821|ref|YP_003178594.1| - 0.18 11.3 1.6 0.19 11.2 1.1 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain A2L_zn_ribbon PF08792.5 gi|257388821|ref|YP_003178594.1| - 0.2 11.1 1.9 4.1 6.9 0.1 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain zf-ribbon_3 PF13248.1 gi|257388821|ref|YP_003178594.1| - 0.25 10.6 1.6 0.39 9.9 1.1 1.4 1 1 0 1 1 1 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.6 gi|257388821|ref|YP_003178594.1| - 0.41 10.3 4.2 2.9 7.5 0.4 2.0 1 1 1 2 2 2 0 Putative transposase DNA-binding domain zf-C2H2_3 PF13878.1 gi|257388821|ref|YP_003178594.1| - 0.44 10.1 3.8 0.65 9.6 2.6 1.3 1 0 0 1 1 1 0 zinc-finger of acetyl-transferase ESCO Cas_CXXC_CXXC PF09706.5 gi|257388821|ref|YP_003178594.1| - 0.8 9.9 3.5 0.83 9.8 0.2 1.9 1 1 1 2 2 2 0 CRISPR-associated protein (Cas_CXXC_CXXC) DNA_RNApol_7kD PF03604.8 gi|257388821|ref|YP_003178594.1| - 0.99 8.9 4.9 4.3 6.8 3.3 1.9 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit TFIIS_C PF01096.13 gi|257388821|ref|YP_003178594.1| - 1 9.0 6.2 1.8 8.3 0.4 2.1 1 1 0 2 2 2 0 Transcription factor S-II (TFIIS) Methyltransf_11 PF08241.7 gi|257388822|ref|YP_003178595.1| - 5.2e-17 62.1 0.1 7.8e-17 61.5 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|257388822|ref|YP_003178595.1| - 2.7e-11 43.0 0.0 8.1e-11 41.4 0.0 1.6 1 1 1 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.1 gi|257388822|ref|YP_003178595.1| - 3e-11 43.2 0.0 4.5e-11 42.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|257388822|ref|YP_003178595.1| - 1.3e-09 37.7 0.0 1.6e-09 37.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.7 gi|257388822|ref|YP_003178595.1| - 1.1e-08 35.4 0.0 1.9e-08 34.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|257388822|ref|YP_003178595.1| - 3.6e-06 27.5 0.7 6.7e-06 26.6 0.5 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|257388822|ref|YP_003178595.1| - 2.7e-05 24.4 0.1 4.3e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.10 gi|257388822|ref|YP_003178595.1| - 0.00013 21.6 0.0 0.00016 21.4 0.0 1.3 1 0 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_26 PF13659.1 gi|257388822|ref|YP_003178595.1| - 0.0012 18.8 3.6 0.016 15.2 2.5 2.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_2 PF00891.13 gi|257388822|ref|YP_003178595.1| - 0.0026 17.0 0.8 0.0034 16.6 0.6 1.2 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_24 PF13578.1 gi|257388822|ref|YP_003178595.1| - 0.0089 16.8 0.9 0.014 16.1 0.6 1.5 1 1 0 1 1 1 1 Methyltransferase domain DUF3054 PF11255.3 gi|257388823|ref|YP_003178596.1| - 7.7e-26 90.1 11.0 9.2e-26 89.8 7.6 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3054) CoA_binding_3 PF13727.1 gi|257388823|ref|YP_003178596.1| - 0.052 13.3 3.9 0.037 13.8 1.6 1.5 2 0 0 2 2 2 0 CoA-binding domain HR_lesion PF05514.6 gi|257388823|ref|YP_003178596.1| - 0.15 11.9 1.3 0.24 11.2 0.9 1.4 1 0 0 1 1 1 0 HR-like lesion-inducing PetG PF02529.10 gi|257388825|ref|YP_003178598.1| - 0.041 13.4 1.1 0.041 13.4 0.8 2.1 2 1 1 3 3 3 0 Cytochrome B6-F complex subunit 5 IncA PF04156.9 gi|257388825|ref|YP_003178598.1| - 7.1 6.1 9.4 8.7 5.8 6.5 1.0 1 0 0 1 1 1 0 IncA protein OCD_Mu_crystall PF02423.10 gi|257388826|ref|YP_003178599.1| - 1.3e-58 198.2 2.7 1.5e-58 198.0 1.9 1.1 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.15 gi|257388826|ref|YP_003178599.1| - 0.0027 17.8 0.0 0.0044 17.1 0.0 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.1 gi|257388826|ref|YP_003178599.1| - 0.027 14.7 0.1 0.056 13.7 0.1 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding UDPG_MGDP_dh_C PF03720.10 gi|257388826|ref|YP_003178599.1| - 0.052 13.7 1.5 0.31 11.2 0.1 2.2 1 1 1 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain DUF1119 PF06550.6 gi|257388827|ref|YP_003178600.1| - 3.4e-79 265.9 17.2 5.3e-79 265.2 11.9 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF1119) Peptidase_A22B PF04258.8 gi|257388827|ref|YP_003178600.1| - 3.7e-07 29.9 4.8 0.0032 16.9 0.2 2.6 3 0 0 3 3 3 2 Signal peptide peptidase DUF3464 PF11947.3 gi|257388827|ref|YP_003178600.1| - 5.3 6.4 5.3 15 5.0 3.7 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3464) Gar1 PF04410.9 gi|257388828|ref|YP_003178601.1| - 3.9e-08 32.9 0.0 3.9e-08 32.9 0.0 1.0 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region SRP19 PF01922.12 gi|257388829|ref|YP_003178602.1| - 1.7e-27 95.8 0.1 1.9e-27 95.6 0.0 1.0 1 0 0 1 1 1 1 SRP19 protein Peripla_BP_2 PF01497.13 gi|257388830|ref|YP_003178603.1| - 2.5e-26 92.2 1.2 4e-26 91.6 0.9 1.4 1 0 0 1 1 1 1 Periplasmic binding protein NPV_P10 PF05531.7 gi|257388830|ref|YP_003178603.1| - 0.057 13.6 0.0 0.15 12.3 0.0 1.6 1 0 0 1 1 1 0 Nucleopolyhedrovirus P10 protein FecCD PF01032.13 gi|257388831|ref|YP_003178604.1| - 2e-90 302.7 31.4 3.2e-90 302.1 21.5 1.5 1 1 0 1 1 1 1 FecCD transport family ABC-3 PF00950.12 gi|257388831|ref|YP_003178604.1| - 0.00071 18.9 19.7 0.0013 18.0 13.7 1.4 1 0 0 1 1 1 1 ABC 3 transport family ABC_tran PF00005.22 gi|257388832|ref|YP_003178605.1| - 1.3e-29 103.2 0.0 2.1e-29 102.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|257388832|ref|YP_003178605.1| - 5.1e-06 26.6 0.0 0.0012 18.8 0.0 2.1 2 0 0 2 2 2 1 AAA domain SMC_N PF02463.14 gi|257388832|ref|YP_003178605.1| - 0.00015 21.1 0.1 0.004 16.4 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain Zeta_toxin PF06414.7 gi|257388832|ref|YP_003178605.1| - 0.0036 16.4 0.0 0.0071 15.4 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin SbcCD_C PF13558.1 gi|257388832|ref|YP_003178605.1| - 0.0041 17.0 0.1 0.074 12.9 0.1 2.6 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_30 PF13604.1 gi|257388832|ref|YP_003178605.1| - 0.0075 15.8 0.0 0.024 14.2 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|257388832|ref|YP_003178605.1| - 0.011 15.0 0.0 0.048 13.0 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.1 gi|257388832|ref|YP_003178605.1| - 0.018 14.5 0.0 0.036 13.6 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|257388832|ref|YP_003178605.1| - 0.02 15.2 0.0 0.025 14.9 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|257388832|ref|YP_003178605.1| - 0.022 14.7 0.5 0.082 12.8 0.3 2.1 1 1 0 1 1 1 0 AAA ATPase domain AAA_33 PF13671.1 gi|257388832|ref|YP_003178605.1| - 0.035 13.9 0.3 0.2 11.5 0.0 2.4 3 0 0 3 3 3 0 AAA domain UPF0079 PF02367.12 gi|257388832|ref|YP_003178605.1| - 0.041 13.5 0.0 0.067 12.8 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 DUF258 PF03193.11 gi|257388832|ref|YP_003178605.1| - 0.079 12.1 0.0 0.12 11.5 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 cobW PF02492.14 gi|257388832|ref|YP_003178605.1| - 0.079 12.3 0.0 0.15 11.4 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain NB-ARC PF00931.17 gi|257388832|ref|YP_003178605.1| - 0.12 11.1 0.0 0.19 10.5 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain DUF3584 PF12128.3 gi|257388832|ref|YP_003178605.1| - 0.14 9.4 0.2 0.19 9.0 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_24 PF13479.1 gi|257388832|ref|YP_003178605.1| - 0.16 11.5 0.1 0.28 10.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain CAP PF00188.21 gi|257388833|ref|YP_003178606.1| - 0.021 15.3 0.3 0.044 14.2 0.1 1.6 1 1 0 1 1 1 0 Cysteine-rich secretory protein family Orbi_VP6 PF01516.11 gi|257388833|ref|YP_003178606.1| - 0.067 12.2 2.6 0.094 11.7 1.8 1.3 1 0 0 1 1 1 0 Orbivirus helicase VP6 DUF1494 PF07379.6 gi|257388833|ref|YP_003178606.1| - 0.13 12.1 0.0 0.25 11.2 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1494) HTH_45 PF14947.1 gi|257388834|ref|YP_003178607.1| - 1e-05 25.2 0.0 1.2e-05 25.0 0.0 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix DUF2250 PF10007.4 gi|257388834|ref|YP_003178607.1| - 2.1e-05 24.3 0.0 4.5e-05 23.2 0.0 1.5 1 1 1 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_27 PF13463.1 gi|257388834|ref|YP_003178607.1| - 0.0047 17.2 0.0 0.006 16.8 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|257388834|ref|YP_003178607.1| - 0.045 13.3 0.0 0.082 12.5 0.0 1.5 1 1 0 1 1 1 0 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|257388834|ref|YP_003178607.1| - 0.13 12.0 0.0 0.4 10.3 0.0 1.7 2 0 0 2 2 2 0 MarR family MaoC_dehydratas PF01575.14 gi|257388835|ref|YP_003178608.1| - 1.9e-17 62.7 0.0 2.4e-17 62.4 0.0 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.1 gi|257388835|ref|YP_003178608.1| - 5.9e-08 32.5 0.2 9.4e-08 31.9 0.1 1.3 1 0 0 1 1 1 1 N-terminal half of MaoC dehydratase FabA PF07977.8 gi|257388835|ref|YP_003178608.1| - 0.0012 18.3 0.0 0.0015 18.0 0.0 1.2 1 0 0 1 1 1 1 FabA-like domain 4HBT_2 PF13279.1 gi|257388835|ref|YP_003178608.1| - 0.0081 16.5 0.0 0.032 14.6 0.0 1.7 1 1 1 2 2 2 1 Thioesterase-like superfamily 4HBT PF03061.17 gi|257388835|ref|YP_003178608.1| - 0.0093 16.0 0.0 0.016 15.2 0.0 1.5 1 0 0 1 1 1 1 Thioesterase superfamily COX2 PF00116.15 gi|257388836|ref|YP_003178609.1| - 1.4e-22 79.7 0.1 3e-22 78.6 0.0 1.6 1 1 0 1 1 1 1 Cytochrome C oxidase subunit II, periplasmic domain COX2_TM PF02790.10 gi|257388836|ref|YP_003178609.1| - 7.6e-11 41.8 0.7 1.1e-10 41.2 0.5 1.3 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, transmembrane domain Cupredoxin_1 PF13473.1 gi|257388836|ref|YP_003178609.1| - 0.00067 19.5 0.0 0.002 17.9 0.0 1.9 1 1 0 1 1 1 1 Cupredoxin-like domain DUF4307 PF14155.1 gi|257388836|ref|YP_003178609.1| - 0.072 12.8 1.5 0.26 11.0 0.2 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4307) TrbC PF04956.8 gi|257388836|ref|YP_003178609.1| - 0.093 12.7 1.5 0.91 9.5 0.4 2.2 2 0 0 2 2 2 0 TrbC/VIRB2 family DctQ PF04290.7 gi|257388836|ref|YP_003178609.1| - 0.12 12.1 3.1 1.9 8.2 0.4 2.2 2 0 0 2 2 2 0 Tripartite ATP-independent periplasmic transporters, DctQ component DUF1772 PF08592.6 gi|257388836|ref|YP_003178609.1| - 0.59 9.8 5.8 0.58 9.8 2.9 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF1772) UbiA PF01040.13 gi|257388837|ref|YP_003178610.1| - 1.7e-32 112.6 24.4 1.7e-32 112.6 16.9 2.4 2 1 0 2 2 2 1 UbiA prenyltransferase family COX15-CtaA PF02628.10 gi|257388837|ref|YP_003178610.1| - 3.7e-13 49.0 17.8 3.7e-13 49.0 12.3 4.0 3 2 0 3 3 3 1 Cytochrome oxidase assembly protein Gate PF07670.9 gi|257388838|ref|YP_003178611.1| - 1.5 8.7 5.3 0.69 9.8 1.8 1.7 2 0 0 2 2 2 0 Nucleoside recognition Sensor PF13796.1 gi|257388839|ref|YP_003178612.1| - 2.1e-29 102.4 31.3 6.6e-29 100.7 21.7 1.6 1 1 0 1 1 1 1 Putative sensor Rdx PF10262.4 gi|257388840|ref|YP_003178613.1| - 1.5e-15 56.9 0.0 1.6e-15 56.8 0.0 1.0 1 0 0 1 1 1 1 Rdx family ABC_tran PF00005.22 gi|257388841|ref|YP_003178614.1| - 5.9e-30 104.3 0.0 9.9e-30 103.6 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|257388841|ref|YP_003178614.1| - 2.4e-17 63.8 0.0 1.2e-10 41.9 0.0 2.1 1 1 1 2 2 2 2 AAA domain IstB_IS21 PF01695.12 gi|257388841|ref|YP_003178614.1| - 9.7e-05 21.8 0.1 0.47 9.8 0.0 2.1 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_23 PF13476.1 gi|257388841|ref|YP_003178614.1| - 0.00015 22.1 0.0 0.00021 21.6 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.1 gi|257388841|ref|YP_003178614.1| - 0.00021 20.9 0.3 0.00083 18.9 0.1 2.1 1 1 1 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|257388841|ref|YP_003178614.1| - 0.00025 21.1 0.3 0.00065 19.7 0.2 1.7 1 1 0 1 1 1 1 AAA ATPase domain UPF0079 PF02367.12 gi|257388841|ref|YP_003178614.1| - 0.0003 20.3 0.2 0.00053 19.6 0.1 1.3 1 0 0 1 1 1 1 Uncharacterised P-loop hydrolase UPF0079 AAA_29 PF13555.1 gi|257388841|ref|YP_003178614.1| - 0.00056 19.3 0.3 0.0012 18.3 0.2 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|257388841|ref|YP_003178614.1| - 0.00083 18.5 0.0 0.24 10.3 0.0 2.0 2 0 0 2 2 2 2 AAA ATPase domain SMC_N PF02463.14 gi|257388841|ref|YP_003178614.1| - 0.0018 17.5 0.0 0.14 11.3 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_33 PF13671.1 gi|257388841|ref|YP_003178614.1| - 0.0023 17.8 0.3 0.013 15.4 0.2 2.4 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|257388841|ref|YP_003178614.1| - 0.0078 15.4 0.0 0.012 14.7 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_28 PF13521.1 gi|257388841|ref|YP_003178614.1| - 0.012 15.6 0.1 0.027 14.4 0.1 1.6 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|257388841|ref|YP_003178614.1| - 0.014 15.6 0.0 0.036 14.2 0.0 1.7 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|257388841|ref|YP_003178614.1| - 0.018 15.2 0.0 0.036 14.2 0.0 1.7 1 1 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.18 gi|257388841|ref|YP_003178614.1| - 0.024 14.5 0.0 0.041 13.8 0.0 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_5 PF07728.9 gi|257388841|ref|YP_003178614.1| - 0.026 14.2 0.0 0.51 10.0 0.0 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) cobW PF02492.14 gi|257388841|ref|YP_003178614.1| - 0.035 13.5 0.0 0.056 12.8 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_17 PF13207.1 gi|257388841|ref|YP_003178614.1| - 0.041 14.6 0.1 0.11 13.3 0.1 1.7 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|257388841|ref|YP_003178614.1| - 0.044 13.1 2.0 0.13 11.6 0.8 2.3 1 1 1 2 2 2 0 AAA domain SbcCD_C PF13558.1 gi|257388841|ref|YP_003178614.1| - 0.067 13.1 0.0 0.22 11.4 0.0 1.9 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit NACHT PF05729.7 gi|257388841|ref|YP_003178614.1| - 0.072 12.7 0.1 0.19 11.3 0.0 1.7 2 0 0 2 2 2 0 NACHT domain SRP54 PF00448.17 gi|257388841|ref|YP_003178614.1| - 0.089 12.2 0.1 0.13 11.6 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain MobB PF03205.9 gi|257388841|ref|YP_003178614.1| - 0.095 12.4 0.1 0.17 11.6 0.0 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_10 PF12846.2 gi|257388841|ref|YP_003178614.1| - 0.098 12.0 0.1 0.37 10.1 0.0 2.0 2 1 1 3 3 3 0 AAA-like domain Zeta_toxin PF06414.7 gi|257388841|ref|YP_003178614.1| - 0.1 11.6 0.2 0.16 11.0 0.2 1.2 1 0 0 1 1 1 0 Zeta toxin Miro PF08477.8 gi|257388841|ref|YP_003178614.1| - 0.1 13.0 0.0 0.18 12.2 0.0 1.4 1 0 0 1 1 1 0 Miro-like protein ABC_ATPase PF09818.4 gi|257388841|ref|YP_003178614.1| - 0.12 10.9 0.3 0.22 10.0 0.2 1.4 1 0 0 1 1 1 0 Predicted ATPase of the ABC class PduV-EutP PF10662.4 gi|257388841|ref|YP_003178614.1| - 0.13 11.7 0.0 0.26 10.7 0.0 1.5 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AFG1_ATPase PF03969.11 gi|257388841|ref|YP_003178614.1| - 0.15 10.8 0.1 0.48 9.1 0.0 1.7 2 0 0 2 2 2 0 AFG1-like ATPase ATP_bind_1 PF03029.12 gi|257388841|ref|YP_003178614.1| - 0.19 11.2 0.1 0.33 10.4 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein ABC2_membrane PF01061.19 gi|257388842|ref|YP_003178615.1| - 3.3e-21 75.4 9.3 4.9e-21 74.8 6.4 1.2 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.2 gi|257388842|ref|YP_003178615.1| - 1.5e-09 37.3 3.7 1.5e-09 37.3 2.6 2.0 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|257388842|ref|YP_003178615.1| - 1.1e-06 27.7 8.5 1.1e-06 27.7 5.9 1.8 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|257388842|ref|YP_003178615.1| - 1.6e-06 27.5 7.7 2.5e-06 26.8 5.3 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_6 PF06182.6 gi|257388842|ref|YP_003178615.1| - 0.87 9.0 7.9 0.076 12.5 1.7 1.9 1 1 1 2 2 2 0 ABC-2 family transporter protein DUF423 PF04241.10 gi|257388842|ref|YP_003178615.1| - 1.1 9.2 6.2 1.2 9.1 1.5 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF423) DUF420 PF04238.7 gi|257388843|ref|YP_003178616.1| - 2.3e-35 121.4 11.7 3.7e-35 120.7 8.1 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF420) DUF2306 PF10067.4 gi|257388843|ref|YP_003178616.1| - 0.0011 19.0 1.8 0.0011 19.0 1.3 2.7 1 1 2 3 3 3 1 Predicted membrane protein (DUF2306) MerC PF03203.9 gi|257388843|ref|YP_003178616.1| - 3.2 8.1 11.9 0.38 11.1 3.4 2.6 1 1 2 3 3 3 0 MerC mercury resistance protein Cytochrom_B561 PF03188.11 gi|257388843|ref|YP_003178616.1| - 4.9 6.9 14.5 2.2 8.0 4.1 2.5 2 1 1 3 3 3 0 Eukaryotic cytochrome b561 B12-binding PF02310.14 gi|257388844|ref|YP_003178617.1| - 6.6e-20 71.1 0.8 1e-19 70.5 0.4 1.4 1 1 1 2 2 2 1 B12 binding domain Staph_haemo PF05480.6 gi|257388844|ref|YP_003178617.1| - 0.11 12.1 0.0 0.25 11.0 0.0 1.6 1 0 0 1 1 1 0 Staphylococcus haemolytic protein ArgK PF03308.11 gi|257388845|ref|YP_003178618.1| - 3.7e-95 317.7 2.2 4.4e-95 317.4 1.5 1.0 1 0 0 1 1 1 1 ArgK protein cobW PF02492.14 gi|257388845|ref|YP_003178618.1| - 1.6e-08 34.2 1.9 3e-07 30.0 1.3 2.2 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain ATP_bind_1 PF03029.12 gi|257388845|ref|YP_003178618.1| - 3.5e-05 23.4 0.1 0.00016 21.2 0.0 2.0 2 1 0 2 2 2 1 Conserved hypothetical ATP binding protein AAA_19 PF13245.1 gi|257388845|ref|YP_003178618.1| - 4.5e-05 23.1 1.1 0.00018 21.1 0.4 2.3 2 1 1 3 3 2 1 Part of AAA domain AAA_17 PF13207.1 gi|257388845|ref|YP_003178618.1| - 8.7e-05 23.3 1.3 0.0007 20.4 0.9 2.5 1 1 0 1 1 1 1 AAA domain AAA_10 PF12846.2 gi|257388845|ref|YP_003178618.1| - 9.7e-05 21.9 0.1 0.00018 21.0 0.1 1.5 1 1 0 1 1 1 1 AAA-like domain SRP54 PF00448.17 gi|257388845|ref|YP_003178618.1| - 9.7e-05 21.8 0.2 0.00029 20.3 0.2 1.7 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_16 PF13191.1 gi|257388845|ref|YP_003178618.1| - 0.00018 21.5 0.8 0.00044 20.3 0.0 2.0 2 1 0 2 2 2 1 AAA ATPase domain NTPase_1 PF03266.10 gi|257388845|ref|YP_003178618.1| - 0.00021 21.0 0.2 0.00051 19.7 0.1 1.6 1 0 0 1 1 1 1 NTPase AAA_30 PF13604.1 gi|257388845|ref|YP_003178618.1| - 0.00021 20.9 0.7 0.00042 19.9 0.0 1.8 2 0 0 2 2 2 1 AAA domain GTP_EFTU PF00009.22 gi|257388845|ref|YP_003178618.1| - 0.00051 19.5 0.1 0.33 10.3 0.0 2.3 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain AAA_22 PF13401.1 gi|257388845|ref|YP_003178618.1| - 0.002 18.2 0.1 0.0074 16.4 0.0 1.9 2 1 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|257388845|ref|YP_003178618.1| - 0.0041 16.6 0.1 0.0089 15.5 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_tran PF00005.22 gi|257388845|ref|YP_003178618.1| - 0.007 16.6 0.0 0.012 15.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter MobB PF03205.9 gi|257388845|ref|YP_003178618.1| - 0.01 15.5 0.2 0.04 13.6 0.0 2.0 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B TrwB_AAD_bind PF10412.4 gi|257388845|ref|YP_003178618.1| - 0.021 13.4 0.1 0.033 12.8 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain CbiA PF01656.18 gi|257388845|ref|YP_003178618.1| - 0.023 14.1 0.2 0.036 13.4 0.1 1.4 1 0 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain NB-ARC PF00931.17 gi|257388845|ref|YP_003178618.1| - 0.026 13.3 0.0 0.041 12.7 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain Zeta_toxin PF06414.7 gi|257388845|ref|YP_003178618.1| - 0.026 13.6 0.0 0.042 12.9 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_18 PF13238.1 gi|257388845|ref|YP_003178618.1| - 0.031 14.5 0.9 0.11 12.7 0.2 2.1 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|257388845|ref|YP_003178618.1| - 0.034 13.5 0.2 0.18 11.1 0.1 2.1 1 1 1 2 2 2 0 AAA domain AAA_28 PF13521.1 gi|257388845|ref|YP_003178618.1| - 0.042 13.8 1.5 0.052 13.5 0.1 1.8 2 0 0 2 2 2 0 AAA domain KaiC PF06745.8 gi|257388845|ref|YP_003178618.1| - 0.05 12.7 0.1 0.11 11.6 0.0 1.6 1 0 0 1 1 1 0 KaiC KAP_NTPase PF07693.9 gi|257388845|ref|YP_003178618.1| - 0.068 12.1 0.0 0.13 11.2 0.0 1.3 1 1 0 1 1 1 0 KAP family P-loop domain PRK PF00485.13 gi|257388845|ref|YP_003178618.1| - 0.07 12.6 0.1 0.17 11.3 0.1 1.7 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_33 PF13671.1 gi|257388845|ref|YP_003178618.1| - 0.077 12.8 0.8 0.15 11.9 0.0 1.8 2 0 0 2 2 2 0 AAA domain DUF258 PF03193.11 gi|257388845|ref|YP_003178618.1| - 0.078 12.1 0.0 0.14 11.2 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF258 KTI12 PF08433.5 gi|257388845|ref|YP_003178618.1| - 0.1 11.7 0.0 0.18 10.9 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 Miro PF08477.8 gi|257388845|ref|YP_003178618.1| - 0.11 12.9 0.1 0.29 11.6 0.1 1.7 1 0 0 1 1 1 0 Miro-like protein NACHT PF05729.7 gi|257388845|ref|YP_003178618.1| - 0.12 12.0 0.0 0.31 10.6 0.0 1.7 1 0 0 1 1 1 0 NACHT domain MMR_HSR1 PF01926.18 gi|257388845|ref|YP_003178618.1| - 0.13 12.2 0.1 0.28 11.1 0.1 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase Abhydrolase_6 PF12697.2 gi|257388846|ref|YP_003178619.1| - 2e-29 103.1 8.1 2.7e-29 102.6 5.6 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|257388846|ref|YP_003178619.1| - 2.5e-14 53.2 0.3 2.8e-13 49.8 0.2 2.1 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|257388846|ref|YP_003178619.1| - 1.5e-05 24.7 0.7 0.00062 19.3 0.5 2.6 1 1 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.3 gi|257388846|ref|YP_003178619.1| - 0.0003 20.5 0.0 0.00067 19.4 0.0 1.6 1 0 0 1 1 1 1 Putative lysophospholipase DUF35 PF01796.12 gi|257388847|ref|YP_003178620.1| - 5.9e-10 39.2 1.5 8.2e-10 38.7 1.0 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain DUF35_N PF12172.3 gi|257388847|ref|YP_003178620.1| - 0.00023 20.9 3.3 0.00043 20.0 2.3 1.4 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) Zn_Tnp_IS1595 PF12760.2 gi|257388847|ref|YP_003178620.1| - 0.096 12.5 0.2 0.15 11.8 0.1 1.2 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Thiolase_N PF00108.18 gi|257388849|ref|YP_003178622.1| - 7.8e-14 51.2 1.6 1.2e-12 47.3 0.1 2.3 2 0 0 2 2 2 1 Thiolase, N-terminal domain ketoacyl-synt PF00109.21 gi|257388849|ref|YP_003178622.1| - 1.8e-09 37.4 4.3 1.8e-09 37.4 3.0 2.7 2 1 1 3 3 3 1 Beta-ketoacyl synthase, N-terminal domain Thiolase_C PF02803.13 gi|257388849|ref|YP_003178622.1| - 2e-08 33.6 0.2 6.3e-08 32.0 0.2 1.9 1 0 0 1 1 1 1 Thiolase, C-terminal domain ACP_syn_III PF08545.5 gi|257388849|ref|YP_003178622.1| - 0.0003 20.3 3.9 0.003 17.1 0.5 2.5 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Ketoacyl-synt_C PF02801.17 gi|257388849|ref|YP_003178622.1| - 0.49 10.2 9.0 1.1 9.1 2.5 3.5 3 1 0 3 3 3 0 Beta-ketoacyl synthase, C-terminal domain Bactofilin PF04519.8 gi|257388851|ref|YP_003178624.1| - 6.9e-10 38.8 7.1 2.6e-08 33.7 0.5 3.2 2 1 0 2 2 2 2 Polymer-forming cytoskeletal Hexapep PF00132.19 gi|257388851|ref|YP_003178624.1| - 2.2e-09 36.4 11.4 0.048 13.1 0.0 6.3 5 1 1 6 6 6 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|257388851|ref|YP_003178624.1| - 0.023 14.2 10.1 0.53 9.8 0.0 4.8 4 2 0 5 5 5 0 Hexapeptide repeat of succinyl-transferase DUF3494 PF11999.3 gi|257388851|ref|YP_003178624.1| - 0.041 13.5 1.2 1.7 8.2 0.0 2.7 1 1 2 3 3 3 0 Protein of unknown function (DUF3494) PAS_9 PF13426.1 gi|257388852|ref|YP_003178625.1| - 1.7e-22 79.7 0.0 7e-14 52.0 0.0 2.4 2 0 0 2 2 2 2 PAS domain PAS_4 PF08448.5 gi|257388852|ref|YP_003178625.1| - 2.3e-20 72.6 11.3 1.6e-09 37.7 0.1 3.9 4 1 0 4 4 4 2 PAS fold HATPase_c PF02518.21 gi|257388852|ref|YP_003178625.1| - 2.3e-18 65.9 0.0 4.6e-18 64.9 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|257388852|ref|YP_003178625.1| - 4.7e-14 51.6 0.0 1.9e-07 30.7 0.0 3.6 3 0 0 3 3 3 2 PAS domain HisKA PF00512.20 gi|257388852|ref|YP_003178625.1| - 3.9e-11 42.7 3.8 4e-10 39.5 0.4 2.8 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS PF00989.19 gi|257388852|ref|YP_003178625.1| - 4.7e-11 42.4 0.1 5.3e-10 39.0 0.0 2.5 2 0 0 2 2 2 1 PAS fold Response_reg PF00072.19 gi|257388852|ref|YP_003178625.1| - 4.5e-05 23.4 0.3 0.00036 20.5 0.0 2.6 3 1 0 3 3 3 1 Response regulator receiver domain PAS_3 PF08447.6 gi|257388852|ref|YP_003178625.1| - 0.00025 21.0 0.0 0.023 14.7 0.0 2.5 2 0 0 2 2 2 1 PAS fold OKR_DC_1_N PF03709.10 gi|257388852|ref|YP_003178625.1| - 0.0069 16.4 0.0 0.018 15.0 0.0 1.7 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, N-terminal domain MMR_HSR1_C PF08438.5 gi|257388853|ref|YP_003178626.1| - 7.1e-33 113.0 0.0 1.1e-32 112.4 0.0 1.3 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.18 gi|257388853|ref|YP_003178626.1| - 1e-17 64.1 0.0 8e-17 61.2 0.0 2.2 1 1 0 1 1 1 1 50S ribosome-binding GTPase TGS PF02824.16 gi|257388853|ref|YP_003178626.1| - 1.4e-12 47.2 0.1 7e-12 45.0 0.0 2.1 2 0 0 2 2 2 1 TGS domain FeoB_N PF02421.13 gi|257388853|ref|YP_003178626.1| - 3.2e-09 36.2 0.0 6.7e-08 31.9 0.0 2.4 3 0 0 3 3 3 1 Ferrous iron transport protein B UbiA PF01040.13 gi|257388854|ref|YP_003178627.1| - 1.5e-17 63.6 24.7 2.4e-17 63.0 17.1 1.3 1 1 0 1 1 1 1 UbiA prenyltransferase family Peptidase_M50B PF13398.1 gi|257388856|ref|YP_003178629.1| - 0.27 10.5 6.5 0.18 11.1 3.8 1.3 1 1 0 1 1 1 0 Peptidase M50B-like MHC2-interact PF09307.5 gi|257388856|ref|YP_003178629.1| - 1.3 8.8 3.6 0.86 9.4 0.2 1.9 1 1 1 2 2 2 0 CLIP, MHC2 interacting HTH_5 PF01022.15 gi|257388857|ref|YP_003178630.1| - 3.3e-10 39.4 0.0 7.8e-10 38.2 0.0 1.5 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|257388857|ref|YP_003178630.1| - 1.4e-09 37.6 0.0 2.9e-09 36.6 0.0 1.4 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.14 gi|257388857|ref|YP_003178630.1| - 0.00013 21.6 0.0 0.00022 20.8 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|257388857|ref|YP_003178630.1| - 0.00068 19.2 0.0 0.0023 17.5 0.0 1.8 2 0 0 2 2 2 1 HTH domain HTH_24 PF13412.1 gi|257388857|ref|YP_003178630.1| - 0.00074 18.8 0.0 0.0018 17.6 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding DUF2089 PF09862.4 gi|257388857|ref|YP_003178630.1| - 0.0049 16.6 0.0 0.0054 16.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2089) HTH_23 PF13384.1 gi|257388857|ref|YP_003178630.1| - 0.022 14.3 0.0 0.042 13.5 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain HTH_27 PF13463.1 gi|257388857|ref|YP_003178630.1| - 0.025 14.8 0.0 0.033 14.4 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain TFIIE_alpha PF02002.12 gi|257388857|ref|YP_003178630.1| - 0.03 13.8 0.0 0.036 13.5 0.0 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit GntR PF00392.16 gi|257388857|ref|YP_003178630.1| - 0.031 13.7 0.0 0.054 12.9 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Rrf2 PF02082.15 gi|257388857|ref|YP_003178630.1| - 0.031 14.3 0.0 0.065 13.3 0.0 1.5 2 0 0 2 2 2 0 Transcriptional regulator HTH_DeoR PF08220.7 gi|257388857|ref|YP_003178630.1| - 0.032 13.7 0.0 0.058 12.9 0.0 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain HTH_45 PF14947.1 gi|257388857|ref|YP_003178630.1| - 0.036 13.8 0.0 0.046 13.5 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix DUF3837 PF12939.2 gi|257388857|ref|YP_003178630.1| - 0.039 13.9 0.3 0.08 12.9 0.2 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF3837) MarR_2 PF12802.2 gi|257388857|ref|YP_003178630.1| - 0.042 13.5 0.0 0.063 12.9 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_12 PF08461.5 gi|257388857|ref|YP_003178630.1| - 0.05 13.3 0.1 0.071 12.8 0.0 1.5 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_10 PF04967.7 gi|257388857|ref|YP_003178630.1| - 0.059 12.9 0.0 0.14 11.7 0.0 1.6 2 0 0 2 2 2 0 HTH DNA binding domain Spond_N PF06468.8 gi|257388858|ref|YP_003178631.1| - 2.1e-10 40.6 0.0 3.3e-10 40.0 0.0 1.2 1 0 0 1 1 1 1 Spondin_N Aminotran_1_2 PF00155.16 gi|257388860|ref|YP_003178633.1| - 1e-62 212.2 0.0 1.4e-62 211.7 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.12 gi|257388860|ref|YP_003178633.1| - 1.9e-13 50.2 0.1 2.6e-13 49.7 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.16 gi|257388860|ref|YP_003178633.1| - 4.4e-08 32.6 0.0 9.9e-08 31.4 0.0 1.5 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.14 gi|257388860|ref|YP_003178633.1| - 0.0033 16.2 0.0 0.011 14.5 0.0 1.7 1 1 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.15 gi|257388860|ref|YP_003178633.1| - 0.0036 15.6 0.0 0.0076 14.5 0.0 1.5 2 0 0 2 2 2 1 Cys/Met metabolism PLP-dependent enzyme DUF745 PF05335.8 gi|257388860|ref|YP_003178633.1| - 0.32 10.4 6.0 0.36 10.3 0.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF745) Vac_Fusion PF02346.11 gi|257388861|ref|YP_003178634.1| - 0.0032 16.8 0.0 0.0032 16.8 0.0 1.2 1 0 0 1 1 1 1 Chordopoxvirus fusion protein Metallophos_2 PF12850.2 gi|257388862|ref|YP_003178635.1| - 0.0001 22.1 0.1 0.00013 21.7 0.1 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|257388862|ref|YP_003178635.1| - 0.00013 21.4 0.9 0.00028 20.3 0.0 1.9 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase DUF3463 PF11946.3 gi|257388862|ref|YP_003178635.1| - 0.072 12.6 0.0 0.12 11.9 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3463) ATP_bind_4 PF01902.12 gi|257388864|ref|YP_003178637.1| - 1.3e-56 191.4 0.0 2.5e-56 190.4 0.0 1.4 1 1 0 1 1 1 1 ATP-binding region QueC PF06508.8 gi|257388864|ref|YP_003178637.1| - 0.049 12.9 0.0 0.064 12.5 0.0 1.2 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC EGL-1 PF11430.3 gi|257388864|ref|YP_003178637.1| - 0.12 11.9 0.1 0.3 10.7 0.1 1.7 1 0 0 1 1 1 0 Programmed cell death activator EGL-1 Usp PF00582.21 gi|257388865|ref|YP_003178638.1| - 4e-55 185.8 4.8 1.5e-27 96.5 0.2 2.1 2 0 0 2 2 2 2 Universal stress protein family DUF373 PF04123.8 gi|257388866|ref|YP_003178639.1| - 7.9e-100 334.2 4.9 8.9e-100 334.0 3.4 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) DUF1269 PF06897.7 gi|257388866|ref|YP_003178639.1| - 0.68 9.9 4.7 19 5.3 0.0 3.0 1 1 2 3 3 3 0 Protein of unknown function (DUF1269) Peptidase_S49 PF01343.13 gi|257388867|ref|YP_003178640.1| - 2.6e-38 131.2 0.0 4.4e-38 130.4 0.0 1.3 1 0 0 1 1 1 1 Peptidase family S49 CLP_protease PF00574.18 gi|257388867|ref|YP_003178640.1| - 0.017 14.7 0.0 3.9 7.0 0.0 2.2 2 0 0 2 2 2 0 Clp protease SDH_sah PF01972.11 gi|257388867|ref|YP_003178640.1| - 0.035 12.8 0.0 0.052 12.3 0.0 1.1 1 0 0 1 1 1 0 Serine dehydrogenase proteinase Nucleos_tra2_C PF07662.8 gi|257388867|ref|YP_003178640.1| - 0.24 10.8 1.9 0.38 10.1 1.3 1.2 1 0 0 1 1 1 0 Na+ dependent nucleoside transporter C-terminus PAC2 PF09754.4 gi|257388868|ref|YP_003178641.1| - 5.7e-43 147.3 0.0 6.8e-43 147.0 0.0 1.0 1 0 0 1 1 1 1 PAC2 family Myosin_tail_1 PF01576.14 gi|257388868|ref|YP_003178641.1| - 0.081 10.6 0.1 0.099 10.3 0.1 1.0 1 0 0 1 1 1 0 Myosin tail Nol1_Nop2_Fmu PF01189.12 gi|257388869|ref|YP_003178642.1| - 2.1e-45 155.3 0.0 2.6e-45 154.9 0.0 1.0 1 0 0 1 1 1 1 NOL1/NOP2/sun family Methyltransf_18 PF12847.2 gi|257388869|ref|YP_003178642.1| - 1.2e-06 29.0 0.0 2.9e-06 27.8 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|257388869|ref|YP_003178642.1| - 8.7e-06 25.3 0.0 1.7e-05 24.4 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|257388869|ref|YP_003178642.1| - 0.00092 19.2 0.0 0.0025 17.8 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain FtsJ PF01728.14 gi|257388869|ref|YP_003178642.1| - 0.016 15.2 0.0 0.026 14.5 0.0 1.4 1 1 0 1 1 1 0 FtsJ-like methyltransferase Nol1_Nop2_Fmu_2 PF13636.1 gi|257388870|ref|YP_003178643.1| - 2.6e-17 62.7 0.0 3e-17 62.5 0.0 1.1 1 0 0 1 1 1 1 pre-rRNA processing and ribosome biogenesis Cas_Cas6 PF01881.11 gi|257388871|ref|YP_003178644.1| - 2e-10 41.0 0.0 2.8e-10 40.6 0.0 1.2 1 0 0 1 1 1 1 CRISPR associated protein Cas6 Cas_TM1802 PF09484.5 gi|257388872|ref|YP_003178645.1| - 3.6e-19 68.6 0.0 1.1e-12 47.2 0.0 2.1 2 0 0 2 2 2 2 CRISPR-associated protein TM1802 (cas_TM1802) DUF694 PF05107.7 gi|257388873|ref|YP_003178646.1| - 1.9e-58 197.8 0.0 2.3e-58 197.6 0.0 1.1 1 0 0 1 1 1 1 Family of unknown function (DUF694) Cas_Cas5d PF09704.5 gi|257388874|ref|YP_003178647.1| - 1.7e-08 34.3 0.0 2.1e-08 34.0 0.0 1.2 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas5) DEAD PF00270.24 gi|257388875|ref|YP_003178648.1| - 7.5e-06 25.5 0.0 4.7e-05 22.9 0.0 2.3 2 1 0 2 2 2 1 DEAD/DEAH box helicase DUF3731 PF12531.3 gi|257388875|ref|YP_003178648.1| - 0.00037 20.0 0.0 0.00067 19.2 0.0 1.3 1 0 0 1 1 1 1 DNA-K related protein ResIII PF04851.10 gi|257388875|ref|YP_003178648.1| - 0.00065 19.5 0.0 0.0015 18.3 0.0 1.7 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit HD PF01966.17 gi|257388875|ref|YP_003178648.1| - 0.022 14.7 0.0 0.068 13.1 0.0 1.8 1 0 0 1 1 1 0 HD domain Cas_Cas4 PF01930.12 gi|257388876|ref|YP_003178649.1| - 3.9e-43 147.1 0.0 4.4e-43 147.0 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.2 gi|257388876|ref|YP_003178649.1| - 4.7e-08 32.7 0.0 5.1e-08 32.6 0.0 1.1 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Cas_Cas1 PF01867.11 gi|257388877|ref|YP_003178650.1| - 7e-87 291.0 0.0 7.9e-87 290.8 0.0 1.0 1 0 0 1 1 1 1 CRISPR associated protein Cas1 CRISPR_Cas2 PF09827.4 gi|257388878|ref|YP_003178651.1| - 8.5e-16 57.8 0.2 9.9e-16 57.6 0.1 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas2 SHS2_FTSA PF02491.15 gi|257388878|ref|YP_003178651.1| - 0.12 12.2 0.0 0.16 11.8 0.0 1.1 1 0 0 1 1 1 0 SHS2 domain inserted in FTSA OrfB_IS605 PF01385.14 gi|257388879|ref|YP_003178652.1| - 5.8e-29 101.1 0.3 1.5e-28 99.7 0.1 1.7 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.6 gi|257388879|ref|YP_003178652.1| - 1.6e-21 75.7 1.5 1.7e-21 75.6 0.1 1.8 2 0 0 2 2 2 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.3 gi|257388879|ref|YP_003178652.1| - 1.9e-08 33.5 1.0 3.5e-08 32.6 0.7 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain zf-ribbon_3 PF13248.1 gi|257388879|ref|YP_003178652.1| - 0.037 13.2 2.1 1.8 7.8 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain DZR PF12773.2 gi|257388879|ref|YP_003178652.1| - 0.056 13.2 1.9 0.12 12.1 1.3 1.6 1 0 0 1 1 1 0 Double zinc ribbon Zn-ribbon_8 PF09723.5 gi|257388879|ref|YP_003178652.1| - 0.52 10.2 2.4 7.6 6.5 0.1 2.4 2 0 0 2 2 2 0 Zinc ribbon domain Y1_Tnp PF01797.11 gi|257388880|ref|YP_003178653.1| - 2.1e-37 127.6 0.0 2.4e-37 127.4 0.0 1.0 1 0 0 1 1 1 1 Transposase IS200 like DUF790 PF05626.6 gi|257388881|ref|YP_003178654.1| - 6.9e-95 317.7 0.0 8.7e-95 317.4 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF790) ResIII PF04851.10 gi|257388882|ref|YP_003178655.1| - 1.2e-25 90.3 0.0 1.4e-23 83.7 0.0 3.0 2 1 0 2 2 2 1 Type III restriction enzyme, res subunit Helicase_C PF00271.26 gi|257388882|ref|YP_003178655.1| - 1.6e-15 56.7 0.1 3.8e-15 55.4 0.1 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.24 gi|257388882|ref|YP_003178655.1| - 1.1e-10 41.2 0.0 3.9e-10 39.4 0.0 1.9 2 0 0 2 2 2 1 DEAD/DEAH box helicase AAA_22 PF13401.1 gi|257388882|ref|YP_003178655.1| - 0.0012 19.0 0.0 0.02 15.0 0.0 2.5 3 0 0 3 3 3 1 AAA domain Helicase_C_2 PF13307.1 gi|257388882|ref|YP_003178655.1| - 0.08 12.8 0.0 1.8 8.4 0.0 3.0 3 1 0 3 3 3 0 Helicase C-terminal domain Peptidase_S8 PF00082.17 gi|257388883|ref|YP_003178656.1| - 3.1e-51 174.1 5.5 3.1e-51 174.1 3.8 1.8 2 0 0 2 2 2 1 Subtilase family PKD PF00801.15 gi|257388883|ref|YP_003178656.1| - 3.5e-18 65.1 8.0 1.2e-17 63.3 4.0 3.0 2 0 0 2 2 2 1 PKD domain DUF3197 PF11432.3 gi|257388883|ref|YP_003178656.1| - 0.015 15.2 0.4 4.9 7.1 0.0 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3197) GrpE PF01025.14 gi|257388884|ref|YP_003178657.1| - 1.9e-38 131.5 13.8 3e-38 130.9 9.5 1.5 1 1 0 1 1 1 1 GrpE OmpH PF03938.9 gi|257388884|ref|YP_003178657.1| - 5.2e-05 23.2 7.7 7e-05 22.8 5.1 1.4 1 1 0 1 1 1 1 Outer membrane protein (OmpH-like) DUF641 PF04859.7 gi|257388884|ref|YP_003178657.1| - 0.0055 16.4 1.4 0.0096 15.6 0.4 1.7 1 1 0 1 1 1 1 Plant protein of unknown function (DUF641) Med9 PF07544.8 gi|257388884|ref|YP_003178657.1| - 0.0065 16.1 3.8 0.012 15.3 0.6 2.7 2 1 0 2 2 2 1 RNA polymerase II transcription mediator complex subunit 9 DUF148 PF02520.12 gi|257388884|ref|YP_003178657.1| - 0.012 15.4 1.3 0.018 14.8 0.5 1.7 2 0 0 2 2 2 0 Domain of unknown function DUF148 Mitofilin PF09731.4 gi|257388884|ref|YP_003178657.1| - 0.013 14.2 14.0 0.017 13.7 9.7 1.1 1 0 0 1 1 1 0 Mitochondrial inner membrane protein Surfac_D-trimer PF09006.6 gi|257388884|ref|YP_003178657.1| - 0.014 15.1 0.8 4.4 7.0 0.5 2.5 1 1 1 2 2 2 0 Lung surfactant protein D coiled-coil trimerisation SlyX PF04102.7 gi|257388884|ref|YP_003178657.1| - 0.033 14.5 1.2 0.18 12.1 0.9 2.4 1 1 0 1 1 1 0 SlyX Het-C PF07217.6 gi|257388884|ref|YP_003178657.1| - 0.038 12.2 1.0 0.042 12.0 0.7 1.1 1 0 0 1 1 1 0 Heterokaryon incompatibility protein Het-C DUF972 PF06156.8 gi|257388884|ref|YP_003178657.1| - 0.1 12.9 5.2 0.22 11.8 3.6 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF972) DUF812 PF05667.6 gi|257388884|ref|YP_003178657.1| - 0.1 11.1 11.9 0.12 10.8 8.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF812) Rb_C PF08934.5 gi|257388884|ref|YP_003178657.1| - 0.12 12.0 3.5 0.14 11.8 1.8 1.6 1 1 0 1 1 1 0 Rb C-terminal domain TBPIP PF07106.8 gi|257388884|ref|YP_003178657.1| - 0.13 11.8 6.0 0.37 10.3 4.1 1.7 1 1 1 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) TarH PF02203.10 gi|257388884|ref|YP_003178657.1| - 0.19 11.5 6.5 0.96 9.2 1.7 2.4 1 1 2 3 3 3 0 Tar ligand binding domain homologue Atg14 PF10186.4 gi|257388884|ref|YP_003178657.1| - 0.31 9.9 7.4 0.4 9.5 5.1 1.1 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 MAS20 PF02064.10 gi|257388884|ref|YP_003178657.1| - 0.32 10.9 3.4 0.72 9.7 2.4 1.6 1 0 0 1 1 1 0 MAS20 protein import receptor Sipho_Gp157 PF05565.6 gi|257388884|ref|YP_003178657.1| - 0.35 10.4 10.4 2.7 7.5 6.2 2.1 1 1 1 2 2 2 0 Siphovirus Gp157 IncA PF04156.9 gi|257388884|ref|YP_003178657.1| - 0.65 9.5 11.5 0.92 9.0 7.9 1.2 1 0 0 1 1 1 0 IncA protein TMCO5 PF14992.1 gi|257388884|ref|YP_003178657.1| - 0.7 8.9 11.7 0.9 8.6 8.1 1.2 1 0 0 1 1 1 0 TMCO5 family RNase_H2-Ydr279 PF09468.5 gi|257388884|ref|YP_003178657.1| - 0.8 8.8 5.1 1.1 8.4 3.5 1.2 1 0 0 1 1 1 0 Ydr279p protein family (RNase H2 complex component) VitD-bind_III PF09164.5 gi|257388884|ref|YP_003178657.1| - 1.5 8.4 3.4 1.2 8.8 1.3 1.7 2 0 0 2 2 1 0 Vitamin D binding protein, domain III NCKAP5 PF15246.1 gi|257388884|ref|YP_003178657.1| - 2.1 7.6 9.0 0.046 13.0 1.5 1.6 2 0 0 2 2 2 0 Nck-associated protein 5, Peripheral clock protein FUSC PF04632.7 gi|257388884|ref|YP_003178657.1| - 4.5 5.5 4.9 7.9 4.7 3.3 1.4 1 1 0 1 1 1 0 Fusaric acid resistance protein family CMS1 PF14617.1 gi|257388884|ref|YP_003178657.1| - 4.7 6.2 13.5 0.43 9.6 4.7 1.9 1 1 1 2 2 2 0 U3-containing 90S pre-ribosomal complex subunit HSP70 PF00012.15 gi|257388885|ref|YP_003178658.1| - 3.9e-240 797.8 19.6 6.7e-210 698.0 11.2 2.0 1 1 1 2 2 2 2 Hsp70 protein MreB_Mbl PF06723.8 gi|257388885|ref|YP_003178658.1| - 2.1e-20 72.6 0.3 2.1e-20 72.6 0.2 2.1 2 0 0 2 2 2 1 MreB/Mbl protein FGGY_C PF02782.11 gi|257388885|ref|YP_003178658.1| - 0.0022 17.6 0.2 0.0064 16.1 0.0 1.9 2 0 0 2 2 2 1 FGGY family of carbohydrate kinases, C-terminal domain StbA PF06406.6 gi|257388885|ref|YP_003178658.1| - 0.0043 16.0 0.1 0.021 13.7 0.0 2.2 3 0 0 3 3 3 1 StbA protein Hydantoinase_A PF01968.13 gi|257388885|ref|YP_003178658.1| - 0.1 11.7 0.1 0.1 11.7 0.0 3.6 4 0 0 4 4 4 0 Hydantoinase/oxoprolinase FtsA PF14450.1 gi|257388885|ref|YP_003178658.1| - 0.12 12.2 5.1 12 5.7 0.0 4.0 4 1 0 4 4 4 0 Cell division protein FtsA HTH_20 PF12840.2 gi|257388886|ref|YP_003178659.1| - 0.035 13.8 0.8 0.34 10.7 0.0 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain TerB PF05099.8 gi|257388886|ref|YP_003178659.1| - 0.039 13.6 0.0 0.061 13.0 0.0 1.3 1 1 0 1 1 1 0 Tellurite resistance protein TerB Aldo_ket_red PF00248.16 gi|257388887|ref|YP_003178660.1| - 2e-63 213.9 0.0 2.4e-63 213.6 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family HTH_Tnp_1 PF01527.15 gi|257388887|ref|YP_003178660.1| - 0.035 14.0 0.1 3.3 7.7 0.0 2.5 2 0 0 2 2 2 0 Transposase DUF1628 PF07790.6 gi|257388888|ref|YP_003178661.1| - 7e-06 26.7 0.7 1.4e-05 25.7 0.5 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1628) DUF1521 PF07481.6 gi|257388888|ref|YP_003178661.1| - 0.036 13.7 0.4 0.068 12.8 0.1 1.6 1 1 0 1 1 1 0 Domain of Unknown Function (DUF1521) FlgD_ig PF13860.1 gi|257388888|ref|YP_003178661.1| - 0.055 13.2 1.3 0.16 11.7 0.4 2.1 2 0 0 2 2 2 0 FlgD Ig-like domain CTDII PF01556.13 gi|257388889|ref|YP_003178662.1| - 2.2e-34 117.1 0.0 3.4e-24 84.5 0.0 3.2 3 0 0 3 3 3 2 DnaJ C terminal domain DnaJ PF00226.26 gi|257388889|ref|YP_003178662.1| - 2.5e-25 87.9 3.5 2.5e-25 87.9 2.4 1.8 2 0 0 2 2 2 1 DnaJ domain DnaJ_CXXCXGXG PF00684.14 gi|257388889|ref|YP_003178662.1| - 4.6e-15 55.4 18.3 8.3e-15 54.5 12.7 1.5 1 0 0 1 1 1 1 DnaJ central domain RPT PF13446.1 gi|257388889|ref|YP_003178662.1| - 0.022 14.1 0.1 0.046 13.1 0.1 1.5 1 0 0 1 1 1 0 A repeated domain in UCH-protein DUF3353 PF11833.3 gi|257388889|ref|YP_003178662.1| - 0.27 10.6 1.4 1.1 8.6 0.5 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3353) DZR PF12773.2 gi|257388889|ref|YP_003178662.1| - 1.1 9.1 14.1 3.1 7.6 9.8 1.7 1 1 1 2 2 2 0 Double zinc ribbon A2L_zn_ribbon PF08792.5 gi|257388889|ref|YP_003178662.1| - 3.6 7.1 11.7 4.2 6.9 0.1 3.4 2 2 1 3 3 3 0 A2L zinc ribbon domain GRP PF07172.6 gi|257388889|ref|YP_003178662.1| - 4.7 7.7 24.2 1.1 9.7 13.0 2.5 2 0 0 2 2 2 0 Glycine rich protein family AMP-binding PF00501.23 gi|257388890|ref|YP_003178663.1| - 0.0028 16.1 0.0 0.081 11.2 0.0 2.2 2 0 0 2 2 2 2 AMP-binding enzyme DUF1469 PF07332.6 gi|257388891|ref|YP_003178664.1| - 0.098 12.3 1.8 0.13 12.0 1.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) YtpI PF14007.1 gi|257388891|ref|YP_003178664.1| - 0.14 12.1 0.9 0.18 11.7 0.6 1.2 1 0 0 1 1 1 0 YtpI-like protein DUF3382 PF11862.3 gi|257388891|ref|YP_003178664.1| - 0.38 10.6 1.9 0.57 10.1 0.1 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF3382) DUF3679 PF12438.3 gi|257388891|ref|YP_003178664.1| - 0.63 9.4 2.8 2.2 7.7 0.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3679) CcoS PF03597.10 gi|257388891|ref|YP_003178664.1| - 2 7.9 5.1 0.32 10.4 0.2 1.9 2 0 0 2 2 2 0 Cytochrome oxidase maturation protein cbb3-type Copper-bind PF00127.15 gi|257388893|ref|YP_003178666.1| - 1e-13 51.3 0.2 3.1e-13 49.7 0.1 1.8 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.1 gi|257388893|ref|YP_003178666.1| - 0.014 15.2 0.0 0.021 14.6 0.0 1.3 1 0 0 1 1 1 0 Cupredoxin-like domain Polyketide_cyc2 PF10604.4 gi|257388894|ref|YP_003178667.1| - 4.9e-15 55.9 1.3 6.5e-15 55.5 0.9 1.2 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.15 gi|257388894|ref|YP_003178667.1| - 6.9e-10 39.0 0.1 1.3e-09 38.1 0.1 1.4 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport DFP PF04127.10 gi|257388895|ref|YP_003178668.1| - 2.9e-49 167.2 2.2 3.1e-48 163.8 0.2 2.1 2 0 0 2 2 2 2 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.14 gi|257388895|ref|YP_003178668.1| - 5.5e-26 90.7 0.1 1.3e-25 89.5 0.1 1.7 1 0 0 1 1 1 1 Flavoprotein MNHE PF01899.11 gi|257388896|ref|YP_003178669.1| - 7.1e-33 113.4 2.8 1.1e-32 112.8 1.9 1.2 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit Usp PF00582.21 gi|257388896|ref|YP_003178669.1| - 0.0018 18.4 3.4 0.0039 17.3 1.6 2.2 2 1 0 2 2 2 1 Universal stress protein family MrpF_PhaF PF04066.8 gi|257388897|ref|YP_003178670.1| - 6.7e-16 58.2 3.7 6.7e-16 58.2 2.6 1.6 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) 3Beta_HSD PF01073.14 gi|257388897|ref|YP_003178670.1| - 0.017 13.8 0.4 0.023 13.4 0.3 1.1 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family UbiA PF01040.13 gi|257388897|ref|YP_003178670.1| - 0.018 14.2 1.4 0.022 14.0 1.0 1.0 1 0 0 1 1 1 0 UbiA prenyltransferase family DUF3537 PF12056.3 gi|257388897|ref|YP_003178670.1| - 0.12 11.0 0.4 0.14 10.8 0.3 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3537) PhaG_MnhG_YufB PF03334.9 gi|257388898|ref|YP_003178671.1| - 7.1e-27 93.2 7.8 9e-27 92.9 5.4 1.1 1 0 0 1 1 1 1 Na+/H+ antiporter subunit Phage_holin_2 PF04550.7 gi|257388898|ref|YP_003178671.1| - 0.51 10.4 2.4 0.79 9.8 0.9 1.8 1 1 1 2 2 2 0 Phage holin family 2 DUF4040 PF13244.1 gi|257388899|ref|YP_003178672.1| - 6.1e-22 77.3 8.3 6.1e-22 77.3 5.7 2.5 3 0 0 3 3 3 1 Domain of unknown function (DUF4040) Oxidored_q3 PF00499.15 gi|257388899|ref|YP_003178672.1| - 0.0037 17.0 0.2 0.0057 16.4 0.1 1.4 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 MgtE PF01769.11 gi|257388899|ref|YP_003178672.1| - 2.2 8.5 8.1 9.5 6.5 1.0 2.3 1 1 0 2 2 2 0 Divalent cation transporter DUF4203 PF13886.1 gi|257388899|ref|YP_003178672.1| - 4.1 6.8 11.8 0.4 10.0 4.7 1.8 2 1 0 2 2 2 0 Domain of unknown function (DUF4203) MnhB PF04039.8 gi|257388900|ref|YP_003178673.1| - 2.7e-21 75.8 17.5 3.4e-21 75.5 12.1 1.2 1 0 0 1 1 1 1 Domain related to MnhB subunit of Na+/H+ antiporter ABC2_membrane PF01061.19 gi|257388900|ref|YP_003178673.1| - 7.8 5.5 10.0 21 4.1 6.9 1.7 1 1 0 1 1 1 0 ABC-2 type transporter Oxidored_q2 PF00420.19 gi|257388901|ref|YP_003178674.1| - 2.6e-22 78.1 1.0 3.2e-22 77.9 0.7 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Oxidored_q1 PF00361.15 gi|257388902|ref|YP_003178675.1| - 5.9e-54 183.1 8.2 1e-53 182.3 5.7 1.4 1 0 0 1 1 1 1 NADH-Ubiquinone/plastoquinone (complex I), various chains NADHdeh_related PF10125.4 gi|257388902|ref|YP_003178675.1| - 3.5e-08 32.8 9.5 3.5e-08 32.8 6.6 2.7 2 1 0 2 2 2 1 NADH dehydrogenase I, subunit N related protein Oxidored_q1 PF00361.15 gi|257388903|ref|YP_003178676.1| - 1.6e-60 204.7 3.2 2.8e-60 203.8 2.2 1.4 1 0 0 1 1 1 1 NADH-Ubiquinone/plastoquinone (complex I), various chains Oxidored_q1_N PF00662.15 gi|257388903|ref|YP_003178676.1| - 0.025 14.1 0.1 0.025 14.1 0.0 1.9 2 0 0 2 2 2 0 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q1 PF00361.15 gi|257388904|ref|YP_003178677.1| - 1.8e-41 142.2 10.0 3.9e-41 141.1 6.9 1.6 1 0 0 1 1 1 1 NADH-Ubiquinone/plastoquinone (complex I), various chains DUF1628 PF07790.6 gi|257388905|ref|YP_003178678.1| - 8.2e-26 90.5 2.8 8.7e-26 90.5 0.8 1.7 1 1 1 2 2 2 1 Protein of unknown function (DUF1628) DUF4131 PF13567.1 gi|257388906|ref|YP_003178679.1| - 0.068 12.5 1.6 0.1 12.0 0.1 1.9 3 0 0 3 3 3 0 Domain of unknown function (DUF4131) HTH_20 PF12840.2 gi|257388906|ref|YP_003178679.1| - 0.07 12.9 0.0 0.26 11.1 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain DUF4229 PF14012.1 gi|257388906|ref|YP_003178679.1| - 0.74 9.7 5.6 1.4 8.8 3.9 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF4229) DUF1628 PF07790.6 gi|257388907|ref|YP_003178680.1| - 2.6e-26 92.1 1.9 5.4e-26 91.1 1.3 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1628) Pribosyltran PF00156.22 gi|257388910|ref|YP_003178683.1| - 1.4e-16 60.3 0.7 1.4e-16 60.3 0.5 1.8 2 0 0 2 2 2 1 Phosphoribosyl transferase domain UPRTase PF14681.1 gi|257388910|ref|YP_003178683.1| - 0.0016 17.7 0.2 0.0017 17.5 0.1 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase DUF2529 PF10740.4 gi|257388910|ref|YP_003178683.1| - 0.041 13.3 0.0 0.1 11.9 0.0 1.6 1 1 0 2 2 2 0 Protein of unknown function (DUF2529) AIRC PF00731.15 gi|257388910|ref|YP_003178683.1| - 0.058 12.6 0.0 0.091 12.0 0.0 1.2 1 0 0 1 1 1 0 AIR carboxylase GtrA PF04138.9 gi|257388911|ref|YP_003178684.1| - 1.5e-20 73.2 4.1 1.9e-20 72.9 2.9 1.1 1 0 0 1 1 1 1 GtrA-like protein DUF372 PF04036.7 gi|257388911|ref|YP_003178684.1| - 0.1 12.0 1.8 0.25 10.8 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF372) Glycos_transf_2 PF00535.21 gi|257388912|ref|YP_003178685.1| - 2.8e-06 27.1 0.0 3.6e-06 26.7 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 LysR_substrate PF03466.15 gi|257388912|ref|YP_003178685.1| - 0.0088 15.1 0.2 0.048 12.7 0.0 2.2 2 0 0 2 2 2 1 LysR substrate binding domain Glyco_tranf_2_3 PF13641.1 gi|257388912|ref|YP_003178685.1| - 0.035 13.9 0.4 0.035 13.9 0.3 1.7 2 1 0 2 2 2 0 Glycosyltransferase like family 2 MAAL_C PF07476.6 gi|257388912|ref|YP_003178685.1| - 0.093 11.6 0.0 0.5 9.2 0.0 1.8 1 1 0 1 1 1 0 Methylaspartate ammonia-lyase C-terminus DUF2298 PF10060.4 gi|257388913|ref|YP_003178686.1| - 1.1e-116 390.5 18.9 1.6e-116 389.9 13.1 1.2 1 0 0 1 1 1 1 Uncharacterized membrane protein (DUF2298) RNase_H PF00075.19 gi|257388914|ref|YP_003178687.1| - 4.3e-12 46.4 0.0 9.2e-12 45.4 0.0 1.6 2 0 0 2 2 2 1 RNase H RVT_3 PF13456.1 gi|257388914|ref|YP_003178687.1| - 0.00029 20.5 0.0 0.00047 19.8 0.0 1.3 1 0 0 1 1 1 1 Reverse transcriptase-like DUF3040 PF11239.3 gi|257388916|ref|YP_003178689.1| - 0.14 12.2 5.8 0.17 11.9 4.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) DUF4191 PF13829.1 gi|257388916|ref|YP_003178689.1| - 1.4 8.0 6.4 1.6 7.7 4.4 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) DUF4418 PF14387.1 gi|257388916|ref|YP_003178689.1| - 2.1 8.1 4.8 2.6 7.8 3.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4418) Ribosomal_L44 PF00935.14 gi|257388917|ref|YP_003178690.1| - 1.4e-26 92.2 1.1 1.8e-26 91.9 0.8 1.1 1 0 0 1 1 1 1 Ribosomal protein L44 DUF2296 PF10058.4 gi|257388917|ref|YP_003178690.1| - 0.0032 17.1 1.8 1.8 8.3 0.0 2.2 2 0 0 2 2 2 2 Predicted integral membrane metal-binding protein (DUF2296) zf-ribbon_3 PF13248.1 gi|257388917|ref|YP_003178690.1| - 0.0055 15.8 0.8 1.8 7.9 0.2 2.3 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|257388917|ref|YP_003178690.1| - 0.01 15.2 5.8 0.28 10.7 1.7 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-UBR PF02207.15 gi|257388917|ref|YP_003178690.1| - 0.016 14.8 0.9 2.8 7.7 0.1 2.1 2 0 0 2 2 2 0 Putative zinc finger in N-recognin (UBR box) zf-Mss51 PF13824.1 gi|257388917|ref|YP_003178690.1| - 0.021 14.6 0.7 0.044 13.6 0.5 1.5 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Lar_restr_allev PF14354.1 gi|257388917|ref|YP_003178690.1| - 0.022 15.0 0.0 0.04 14.2 0.0 1.4 1 1 0 1 1 1 0 Restriction alleviation protein Lar DZR PF12773.2 gi|257388917|ref|YP_003178690.1| - 0.026 14.3 2.8 0.14 12.0 2.0 1.9 1 1 0 1 1 1 0 Double zinc ribbon Terminase_GpA PF05876.7 gi|257388917|ref|YP_003178690.1| - 0.033 12.5 0.1 0.044 12.1 0.1 1.2 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) Zn-ribbon_8 PF09723.5 gi|257388917|ref|YP_003178690.1| - 0.048 13.6 3.0 2.6 8.0 0.3 2.3 2 0 0 2 2 2 0 Zinc ribbon domain Zn_Tnp_IS1595 PF12760.2 gi|257388917|ref|YP_003178690.1| - 0.072 12.9 2.8 5.4 6.8 0.2 2.2 2 0 0 2 2 2 0 Transposase zinc-ribbon domain Tnp_zf-ribbon_2 PF13842.1 gi|257388917|ref|YP_003178690.1| - 0.13 12.6 1.6 2.4 8.6 0.1 2.2 2 0 0 2 2 2 0 DDE_Tnp_1-like zinc-ribbon zf-ISL3 PF14690.1 gi|257388917|ref|YP_003178690.1| - 0.16 12.0 2.7 7.3 6.7 0.1 2.3 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 WCCH PF03716.9 gi|257388917|ref|YP_003178690.1| - 0.17 11.3 2.7 0.3 10.5 1.9 1.4 1 0 0 1 1 1 0 WCCH motif Cys_rich_CPXG PF14255.1 gi|257388917|ref|YP_003178690.1| - 0.19 11.5 0.2 0.19 11.5 0.1 1.6 2 0 0 2 2 2 0 Cysteine-rich CPXCG Ribosomal_L33 PF00471.15 gi|257388917|ref|YP_003178690.1| - 5.3 7.3 7.1 0.47 10.7 1.0 1.9 2 0 0 2 2 2 0 Ribosomal protein L33 zf-C2H2 PF00096.21 gi|257388917|ref|YP_003178690.1| - 5.3 7.5 6.6 3.6 8.1 0.4 2.5 2 0 0 2 2 2 0 Zinc finger, C2H2 type zf-H2C2_2 PF13465.1 gi|257388917|ref|YP_003178690.1| - 9.1 6.7 8.6 4 7.8 0.3 2.6 3 0 0 3 3 2 0 Zinc-finger double domain zf-HIT PF04438.11 gi|257388917|ref|YP_003178690.1| - 9.6 5.9 7.1 5.4 6.7 0.8 2.2 2 0 0 2 2 2 0 HIT zinc finger Ribosomal_S27e PF01667.12 gi|257388918|ref|YP_003178691.1| - 4.9e-22 77.2 0.4 5.1e-22 77.1 0.3 1.0 1 0 0 1 1 1 1 Ribosomal protein S27 TF_Zn_Ribbon PF08271.7 gi|257388918|ref|YP_003178691.1| - 0.0012 18.1 0.9 0.0018 17.5 0.6 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding Zn-ribbon_8 PF09723.5 gi|257388918|ref|YP_003178691.1| - 0.0022 17.9 1.9 0.0032 17.3 1.3 1.2 1 0 0 1 1 1 1 Zinc ribbon domain OrfB_Zn_ribbon PF07282.6 gi|257388918|ref|YP_003178691.1| - 0.0065 16.0 0.1 0.0082 15.7 0.1 1.3 1 0 0 1 1 1 1 Putative transposase DNA-binding domain DUF2387 PF09526.5 gi|257388918|ref|YP_003178691.1| - 0.01 15.7 0.3 0.012 15.4 0.2 1.2 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) Zn_Tnp_IS1595 PF12760.2 gi|257388918|ref|YP_003178691.1| - 0.02 14.6 0.1 0.029 14.1 0.1 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain HypA PF01155.14 gi|257388918|ref|YP_003178691.1| - 0.029 14.0 0.5 0.035 13.8 0.3 1.2 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family TFIIS_C PF01096.13 gi|257388918|ref|YP_003178691.1| - 0.04 13.5 2.8 2 8.1 2.0 2.1 1 1 0 1 1 1 0 Transcription factor S-II (TFIIS) zinc_ribbon_5 PF13719.1 gi|257388918|ref|YP_003178691.1| - 0.053 13.1 3.5 0.44 10.1 2.4 2.1 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|257388918|ref|YP_003178691.1| - 0.058 13.0 3.5 0.57 9.9 2.5 2.1 1 1 0 1 1 1 0 zinc-ribbon domain Zn_Tnp_IS91 PF14319.1 gi|257388918|ref|YP_003178691.1| - 0.059 12.8 0.2 0.061 12.8 0.1 1.1 1 0 0 1 1 1 0 Transposase zinc-binding domain IBR PF01485.16 gi|257388918|ref|YP_003178691.1| - 0.06 13.2 0.7 0.079 12.8 0.5 1.1 1 0 0 1 1 1 0 IBR domain CpXC PF14353.1 gi|257388918|ref|YP_003178691.1| - 0.062 13.2 1.4 0.66 9.9 0.1 2.0 1 1 1 2 2 2 0 CpXC protein zf-CHY PF05495.7 gi|257388918|ref|YP_003178691.1| - 0.1 12.7 0.3 0.13 12.4 0.2 1.2 1 0 0 1 1 1 0 CHY zinc finger zinc-ribbons_6 PF07191.7 gi|257388918|ref|YP_003178691.1| - 0.11 12.3 0.6 0.16 11.8 0.4 1.3 1 0 0 1 1 1 0 zinc-ribbons Zn_Tnp_IS1 PF03811.8 gi|257388918|ref|YP_003178691.1| - 0.13 11.8 0.6 0.13 11.8 0.4 2.0 1 1 1 2 2 2 0 InsA N-terminal domain DZR PF12773.2 gi|257388918|ref|YP_003178691.1| - 0.2 11.5 2.0 0.37 10.6 1.4 1.4 1 1 0 1 1 1 0 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|257388918|ref|YP_003178691.1| - 0.27 10.5 3.3 0.84 8.9 2.3 1.8 1 1 0 1 1 1 0 zinc-ribbon domain A2L_zn_ribbon PF08792.5 gi|257388918|ref|YP_003178691.1| - 0.29 10.6 1.9 8.6 5.9 0.4 2.1 2 0 0 2 2 2 0 A2L zinc ribbon domain DNA_ligase_ZBD PF03119.11 gi|257388918|ref|YP_003178691.1| - 0.41 10.4 3.2 1.8 8.3 0.0 2.3 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain DUF3797 PF12677.2 gi|257388918|ref|YP_003178691.1| - 0.75 9.4 2.7 1.4 8.6 0.2 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) zf-HYPF PF07503.7 gi|257388918|ref|YP_003178691.1| - 1.7 8.1 3.9 10 5.6 0.1 2.1 2 0 0 2 2 2 0 HypF finger UPF0547 PF10571.4 gi|257388918|ref|YP_003178691.1| - 1.9 8.2 7.1 8.9 6.1 4.9 2.0 1 1 0 1 1 1 0 Uncharacterised protein family UPF0547 EIF_2_alpha PF07541.7 gi|257388919|ref|YP_003178692.1| - 1.6e-28 98.7 0.0 3.4e-28 97.6 0.0 1.6 1 1 0 1 1 1 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.18 gi|257388919|ref|YP_003178692.1| - 3.8e-14 52.5 0.8 3.8e-14 52.5 0.5 1.7 2 0 0 2 2 2 1 S1 RNA binding domain PP2 PF14299.1 gi|257388919|ref|YP_003178692.1| - 0.42 9.9 2.9 0.3 10.4 0.6 1.8 2 1 0 2 2 2 0 Phloem protein 2 Nop10p PF04135.7 gi|257388920|ref|YP_003178693.1| - 1.1e-22 79.5 0.8 1.2e-22 79.3 0.6 1.0 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family DNA_ligase_ZBD PF03119.11 gi|257388920|ref|YP_003178693.1| - 0.096 12.4 0.3 0.16 11.6 0.2 1.4 1 0 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain PAC2 PF09754.4 gi|257388921|ref|YP_003178694.1| - 1.2e-55 188.7 0.3 1.4e-55 188.5 0.2 1.0 1 0 0 1 1 1 1 PAC2 family 5_3_exonuc PF01367.15 gi|257388921|ref|YP_003178694.1| - 0.089 13.0 0.7 0.64 10.2 0.0 2.7 5 0 0 5 5 5 0 5'-3' exonuclease, C-terminal SAM fold HAMP PF00672.20 gi|257388921|ref|YP_003178694.1| - 4.4 7.5 5.0 38 4.5 0.1 3.1 4 0 0 4 4 4 0 HAMP domain DnaJ PF00226.26 gi|257388922|ref|YP_003178695.1| - 3.7e-11 42.5 0.0 6.3e-11 41.8 0.0 1.3 1 0 0 1 1 1 1 DnaJ domain BphX PF06139.7 gi|257388922|ref|YP_003178695.1| - 0.11 12.1 1.3 0.17 11.4 0.9 1.2 1 0 0 1 1 1 0 BphX-like PALP PF00291.20 gi|257388923|ref|YP_003178696.1| - 4.2e-42 144.4 8.8 5.2e-42 144.1 6.1 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme HypA PF01155.14 gi|257388923|ref|YP_003178696.1| - 0.0029 17.2 0.2 0.0058 16.2 0.1 1.5 1 0 0 1 1 1 1 Hydrogenase expression/synthesis hypA family TF_Zn_Ribbon PF08271.7 gi|257388923|ref|YP_003178696.1| - 0.015 14.6 0.6 0.031 13.5 0.4 1.5 1 0 0 1 1 1 0 TFIIB zinc-binding DUF1272 PF06906.6 gi|257388923|ref|YP_003178696.1| - 0.027 14.3 0.6 0.06 13.2 0.4 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) zf-LYAR PF08790.6 gi|257388923|ref|YP_003178696.1| - 0.17 11.6 0.4 0.3 10.8 0.3 1.4 1 0 0 1 1 1 0 LYAR-type C2HC zinc finger Zn-ribbon_8 PF09723.5 gi|257388923|ref|YP_003178696.1| - 0.26 11.2 5.9 0.27 11.2 2.0 2.5 2 1 0 2 2 2 0 Zinc ribbon domain Amino_oxidase PF01593.19 gi|257388924|ref|YP_003178697.1| - 4.7e-34 118.2 4.5 4.8e-26 91.8 0.3 2.0 2 0 0 2 2 2 2 Flavin containing amine oxidoreductase DAO PF01266.19 gi|257388924|ref|YP_003178697.1| - 1.2e-17 63.8 3.7 2.2e-08 33.4 0.1 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|257388924|ref|YP_003178697.1| - 1.4e-16 60.2 0.2 3.8e-16 58.8 0.1 1.8 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.22 gi|257388924|ref|YP_003178697.1| - 2.4e-09 37.4 0.8 5.1e-05 23.6 0.3 2.5 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|257388924|ref|YP_003178697.1| - 3.1e-08 32.5 2.8 5e-06 25.2 0.2 2.1 2 0 0 2 2 2 2 HI0933-like protein FAD_oxidored PF12831.2 gi|257388924|ref|YP_003178697.1| - 8.3e-08 31.7 2.1 1.7e-07 30.7 0.6 1.9 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.9 gi|257388924|ref|YP_003178697.1| - 1.4e-07 31.5 0.8 4.5e-06 26.6 0.4 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.19 gi|257388924|ref|YP_003178697.1| - 3.2e-07 29.5 5.5 3.6e-07 29.4 0.9 2.1 2 0 0 2 2 2 1 FAD binding domain Pyr_redox_3 PF13738.1 gi|257388924|ref|YP_003178697.1| - 4.8e-07 30.0 0.0 0.00018 21.6 0.0 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|257388924|ref|YP_003178697.1| - 2.6e-06 26.7 3.8 3.4e-06 26.3 0.8 2.0 2 0 0 2 2 2 1 FAD binding domain Thi4 PF01946.12 gi|257388924|ref|YP_003178697.1| - 2.8e-06 26.5 1.0 3.8e-06 26.1 0.2 1.5 2 0 0 2 2 2 1 Thi4 family GIDA PF01134.17 gi|257388924|ref|YP_003178697.1| - 3e-06 26.3 0.0 4.7e-06 25.7 0.0 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A AlaDh_PNT_C PF01262.16 gi|257388924|ref|YP_003178697.1| - 0.0013 18.3 0.1 0.0023 17.5 0.1 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_9 PF13454.1 gi|257388924|ref|YP_003178697.1| - 0.002 17.9 3.3 0.037 13.8 0.1 2.4 2 0 0 2 2 2 1 FAD-NAD(P)-binding Lycopene_cycl PF05834.7 gi|257388924|ref|YP_003178697.1| - 0.017 14.0 0.2 0.017 14.0 0.1 1.6 2 0 0 2 2 2 0 Lycopene cyclase protein Trp_halogenase PF04820.9 gi|257388924|ref|YP_003178697.1| - 0.032 12.8 0.4 0.032 12.8 0.2 1.6 2 0 0 2 2 2 0 Tryptophan halogenase 3HCDH_N PF02737.13 gi|257388924|ref|YP_003178697.1| - 0.038 13.6 0.3 0.038 13.6 0.2 1.8 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.1 gi|257388924|ref|YP_003178697.1| - 0.043 14.0 0.1 0.11 12.7 0.0 1.7 2 0 0 2 2 2 0 Putative NAD(P)-binding FMO-like PF00743.14 gi|257388924|ref|YP_003178697.1| - 0.071 11.3 0.0 0.094 10.8 0.0 1.1 1 0 0 1 1 1 0 Flavin-binding monooxygenase-like NAD_binding_10 PF13460.1 gi|257388924|ref|YP_003178697.1| - 0.12 12.3 7.7 0.21 11.5 0.2 2.2 2 0 0 2 2 2 0 NADH(P)-binding NTP_transferase PF00483.18 gi|257388925|ref|YP_003178698.1| - 2e-36 125.5 0.0 2.4e-36 125.2 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|257388925|ref|YP_003178698.1| - 2e-11 44.2 0.0 2.3e-11 44.0 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.19 gi|257388925|ref|YP_003178698.1| - 0.69 9.5 4.5 1.5 8.4 0.2 3.0 3 0 0 3 3 3 0 Bacterial transferase hexapeptide (six repeats) Glyoxalase_4 PF13669.1 gi|257388926|ref|YP_003178699.1| - 6e-16 58.4 0.2 7.1e-16 58.1 0.2 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.2 gi|257388926|ref|YP_003178699.1| - 1.4e-08 35.3 0.2 1.6e-08 35.0 0.1 1.1 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_3 PF13468.1 gi|257388926|ref|YP_003178699.1| - 4.9e-08 33.0 1.4 6.7e-08 32.6 1.0 1.2 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.20 gi|257388926|ref|YP_003178699.1| - 5.1e-08 32.9 0.3 6e-08 32.7 0.2 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DUF1338 PF07063.8 gi|257388926|ref|YP_003178699.1| - 0.093 11.7 0.0 0.13 11.2 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF1338) DUF2613 PF11021.3 gi|257388927|ref|YP_003178700.1| - 0.034 13.8 1.5 0.063 12.9 1.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2613) MM_CoA_mutase PF01642.17 gi|257388928|ref|YP_003178701.1| - 2.3e-206 685.9 1.7 2.9e-206 685.6 1.2 1.0 1 0 0 1 1 1 1 Methylmalonyl-CoA mutase Lactamase_B PF00753.22 gi|257388929|ref|YP_003178702.1| - 7.4e-11 42.0 3.7 2e-10 40.6 2.6 1.7 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|257388929|ref|YP_003178702.1| - 1.6e-08 34.2 0.1 2.8e-08 33.5 0.1 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Cas_Cas02710 PF09670.5 gi|257388930|ref|YP_003178703.1| - 1.8e-05 23.5 0.0 2.2e-05 23.2 0.0 1.1 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas02710) HTH_27 PF13463.1 gi|257388930|ref|YP_003178703.1| - 0.023 15.0 0.1 0.1 12.9 0.0 2.0 2 0 0 2 2 2 0 Winged helix DNA-binding domain DUF1887 PF09002.6 gi|257388930|ref|YP_003178703.1| - 0.06 11.7 0.0 0.082 11.2 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1887) DEAD_assoc PF08494.6 gi|257388930|ref|YP_003178703.1| - 0.13 12.0 0.0 0.2 11.3 0.0 1.3 1 0 0 1 1 1 0 DEAD/H associated SHMT PF00464.14 gi|257388931|ref|YP_003178704.1| - 1.1e-143 478.4 0.0 1.2e-143 478.2 0.0 1.0 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Beta_elim_lyase PF01212.16 gi|257388931|ref|YP_003178704.1| - 9.2e-06 25.0 2.0 0.0002 20.6 1.3 2.3 1 1 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.12 gi|257388931|ref|YP_003178704.1| - 0.00047 19.2 0.5 0.00092 18.3 0.4 1.4 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Acetyltransf_1 PF00583.19 gi|257388932|ref|YP_003178705.1| - 3.2e-09 36.6 0.1 5.1e-09 36.0 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.1 gi|257388932|ref|YP_003178705.1| - 0.00011 22.2 0.0 0.00017 21.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|257388932|ref|YP_003178705.1| - 0.00089 19.3 0.0 0.0014 18.7 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|257388932|ref|YP_003178705.1| - 0.0015 18.3 0.0 0.0028 17.5 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_3 PF13302.1 gi|257388932|ref|YP_003178705.1| - 0.012 15.7 0.1 0.017 15.2 0.1 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain DNA_pol_B PF00136.16 gi|257388933|ref|YP_003178706.1| - 8.9e-55 186.2 0.1 3.4e-34 118.4 0.1 2.5 2 1 0 2 2 2 2 DNA polymerase family B DNA_pol_B_exo1 PF03104.14 gi|257388933|ref|YP_003178706.1| - 7.6e-31 107.1 0.0 1.2e-30 106.4 0.0 1.3 1 0 0 1 1 1 1 DNA polymerase family B, exonuclease domain Hint_2 PF13403.1 gi|257388933|ref|YP_003178706.1| - 2.9e-08 33.7 0.0 1.2e-07 31.7 0.0 1.9 1 1 0 1 1 1 1 Hint domain Hint PF01079.15 gi|257388933|ref|YP_003178706.1| - 9.3e-07 28.2 0.0 1.6e-06 27.5 0.0 1.3 1 0 0 1 1 1 1 Hint module LAGLIDADG_3 PF14528.1 gi|257388933|ref|YP_003178706.1| - 3.3e-05 24.0 0.0 9.7e-05 22.5 0.0 1.8 1 0 0 1 1 1 1 LAGLIDADG-like domain PT-HINT PF07591.6 gi|257388933|ref|YP_003178706.1| - 0.0029 17.4 0.1 0.012 15.4 0.0 2.0 2 0 0 2 2 2 1 Pretoxin HINT domain Asp-Al_Ex PF06826.7 gi|257388935|ref|YP_003178708.1| - 0.018 14.5 0.3 0.025 14.0 0.2 1.1 1 0 0 1 1 1 0 Predicted Permease Membrane Region DUF2157 PF09925.4 gi|257388935|ref|YP_003178708.1| - 0.058 12.9 0.0 0.073 12.6 0.0 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2157) RseC_MucC PF04246.7 gi|257388935|ref|YP_003178708.1| - 0.16 11.5 0.1 0.18 11.3 0.1 1.1 1 0 0 1 1 1 0 Positive regulator of sigma(E), RseC/MucC AAA_23 PF13476.1 gi|257388937|ref|YP_003178710.1| - 1.4e-14 54.9 75.0 2.4e-06 28.0 41.3 5.7 1 1 1 2 2 1 1 AAA domain AAA_13 PF13166.1 gi|257388937|ref|YP_003178710.1| - 1e-11 44.1 53.8 3.2e-07 29.2 2.1 4.5 2 1 3 5 5 5 4 AAA domain SMC_N PF02463.14 gi|257388937|ref|YP_003178710.1| - 1.6e-10 40.6 46.9 1.3e-09 37.6 32.5 2.3 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|257388937|ref|YP_003178710.1| - 1.6e-10 41.4 1.8 1.9e-05 24.7 0.0 2.8 3 0 0 3 3 3 2 AAA domain AAA_15 PF13175.1 gi|257388937|ref|YP_003178710.1| - 1.4e-08 34.2 0.0 0.00011 21.3 0.0 2.7 3 0 0 3 3 3 2 AAA ATPase domain AAA_29 PF13555.1 gi|257388937|ref|YP_003178710.1| - 3.6e-06 26.3 0.0 7.1e-06 25.4 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain Atg14 PF10186.4 gi|257388937|ref|YP_003178710.1| - 5.2e-05 22.3 86.7 0.00012 21.0 10.1 5.7 1 1 3 5 5 5 2 UV radiation resistance protein and autophagy-related subunit 14 Reo_sigmaC PF04582.7 gi|257388937|ref|YP_003178710.1| - 0.031 13.4 23.6 0.024 13.8 2.5 4.4 2 2 0 4 4 4 0 Reovirus sigma C capsid protein AAA_27 PF13514.1 gi|257388937|ref|YP_003178710.1| - 0.034 11.8 114.3 0.047 11.3 0.0 4.3 1 1 2 4 4 4 0 AAA domain DUF3584 PF12128.3 gi|257388937|ref|YP_003178710.1| - 0.087 10.1 99.5 0.034 11.5 28.9 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF3584) NPV_P10 PF05531.7 gi|257388937|ref|YP_003178710.1| - 0.1 12.8 27.9 0.61 10.3 0.2 7.0 4 3 2 6 6 6 0 Nucleopolyhedrovirus P10 protein AAA_33 PF13671.1 gi|257388937|ref|YP_003178710.1| - 0.25 11.2 0.0 0.25 11.2 0.0 5.0 3 2 1 4 4 1 0 AAA domain ABC_tran PF00005.22 gi|257388937|ref|YP_003178710.1| - 0.46 10.7 0.0 0.46 10.7 0.0 5.1 2 1 1 3 3 2 0 ABC transporter AAA_22 PF13401.1 gi|257388937|ref|YP_003178710.1| - 1.2 9.2 0.0 1.2 9.2 0.0 3.7 4 0 0 4 4 4 0 AAA domain SUV3_C PF12513.3 gi|257388937|ref|YP_003178710.1| - 1.3 8.4 5.2 4.8 6.6 0.0 4.4 4 0 0 4 4 4 0 Mitochondrial degradasome RNA helicase subunit C terminal DUF2284 PF10050.4 gi|257388937|ref|YP_003178710.1| - 9.2 5.8 8.4 48 3.4 5.9 2.3 1 1 0 1 1 1 0 Predicted metal-binding protein (DUF2284) DUF948 PF06103.6 gi|257388937|ref|YP_003178710.1| - 9.7 6.1 16.3 5.9 6.8 0.3 5.4 5 1 1 6 6 6 0 Bacterial protein of unknown function (DUF948) Metallophos_2 PF12850.2 gi|257388938|ref|YP_003178711.1| - 2.7e-15 56.5 0.6 5.7e-15 55.4 0.4 1.5 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.23 gi|257388938|ref|YP_003178711.1| - 4.5e-11 42.5 3.0 6.5e-11 41.9 2.1 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase THDPS_N_2 PF14805.1 gi|257388939|ref|YP_003178712.1| - 0.16 11.8 0.7 0.3 11.0 0.2 1.7 1 1 1 2 2 2 0 Tetrahydrodipicolinate N-succinyltransferase N-terminal HTH_24 PF13412.1 gi|257388940|ref|YP_003178713.1| - 1.9e-07 30.3 0.0 2.8e-07 29.8 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TFIIE_alpha PF02002.12 gi|257388940|ref|YP_003178713.1| - 2.6e-05 23.6 0.0 3e-05 23.4 0.0 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit MarR_2 PF12802.2 gi|257388940|ref|YP_003178713.1| - 2.6e-05 23.7 0.1 3.5e-05 23.3 0.1 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|257388940|ref|YP_003178713.1| - 0.00025 20.6 0.1 0.00033 20.2 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|257388940|ref|YP_003178713.1| - 0.00046 19.9 0.3 0.0013 18.5 0.1 1.9 2 1 0 2 2 2 1 Helix-turn-helix domain GntR PF00392.16 gi|257388940|ref|YP_003178713.1| - 0.00064 19.1 0.1 0.00099 18.4 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_27 PF13463.1 gi|257388940|ref|YP_003178713.1| - 0.00097 19.4 0.1 0.0014 18.8 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.17 gi|257388940|ref|YP_003178713.1| - 0.0029 17.2 0.0 0.0041 16.7 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_28 PF13518.1 gi|257388940|ref|YP_003178713.1| - 0.017 15.0 0.0 0.022 14.7 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_36 PF13730.1 gi|257388940|ref|YP_003178713.1| - 0.023 14.8 0.0 0.043 13.9 0.0 1.5 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_5 PF01022.15 gi|257388940|ref|YP_003178713.1| - 0.023 14.3 0.0 0.035 13.7 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family PaaX PF07848.7 gi|257388940|ref|YP_003178713.1| - 0.043 13.8 0.1 0.058 13.3 0.0 1.3 1 0 0 1 1 1 0 PaaX-like protein HTH_IclR PF09339.5 gi|257388940|ref|YP_003178713.1| - 0.047 13.2 0.2 0.076 12.6 0.2 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_11 PF08279.7 gi|257388940|ref|YP_003178713.1| - 0.048 13.3 0.0 0.069 12.8 0.0 1.2 1 0 0 1 1 1 0 HTH domain Replic_Relax PF13814.1 gi|257388940|ref|YP_003178713.1| - 0.069 12.9 0.0 0.086 12.6 0.0 1.3 1 0 0 1 1 1 0 Replication-relaxation HTH_AsnC-type PF13404.1 gi|257388940|ref|YP_003178713.1| - 0.097 12.2 0.1 0.22 11.0 0.0 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain Rrf2 PF02082.15 gi|257388940|ref|YP_003178713.1| - 0.11 12.6 0.0 0.15 12.2 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator HTH_Crp_2 PF13545.1 gi|257388940|ref|YP_003178713.1| - 0.13 12.0 0.0 0.15 11.8 0.0 1.2 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain AAA PF00004.24 gi|257388941|ref|YP_003178714.1| - 4.7e-44 149.7 0.9 9.5e-44 148.7 0.0 2.0 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) AAA_2 PF07724.9 gi|257388941|ref|YP_003178714.1| - 7e-10 39.0 0.4 4.1e-09 36.5 0.0 2.5 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.7 gi|257388941|ref|YP_003178714.1| - 1.3e-06 27.6 0.0 2.9e-06 26.4 0.0 1.6 2 0 0 2 2 1 1 Holliday junction DNA helicase ruvB N-terminus AAA_16 PF13191.1 gi|257388941|ref|YP_003178714.1| - 1.8e-06 28.0 4.5 3.9e-05 23.7 0.0 3.6 2 2 0 2 2 2 1 AAA ATPase domain AAA_5 PF07728.9 gi|257388941|ref|YP_003178714.1| - 4.2e-06 26.5 0.3 4.7e-05 23.1 0.2 2.5 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_17 PF13207.1 gi|257388941|ref|YP_003178714.1| - 5e-06 27.3 0.8 2.5e-05 25.0 0.0 2.4 2 1 0 2 2 2 1 AAA domain AAA_22 PF13401.1 gi|257388941|ref|YP_003178714.1| - 7.3e-06 26.1 3.9 8.3e-05 22.7 0.1 3.2 2 2 0 2 2 2 1 AAA domain AAA_33 PF13671.1 gi|257388941|ref|YP_003178714.1| - 0.00022 21.1 0.1 0.00091 19.1 0.1 2.2 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.1 gi|257388941|ref|YP_003178714.1| - 0.00029 20.7 0.1 0.0016 18.3 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|257388941|ref|YP_003178714.1| - 0.00032 20.4 0.2 0.0011 18.6 0.2 1.9 1 0 0 1 1 1 1 Part of AAA domain NACHT PF05729.7 gi|257388941|ref|YP_003178714.1| - 0.00036 20.2 0.2 0.019 14.6 0.0 2.5 1 1 1 2 2 2 1 NACHT domain GrpE PF01025.14 gi|257388941|ref|YP_003178714.1| - 0.00036 20.1 6.5 0.00036 20.1 4.5 1.8 2 0 0 2 2 1 1 GrpE TIP49 PF06068.8 gi|257388941|ref|YP_003178714.1| - 0.00063 18.5 0.0 0.0016 17.2 0.0 1.7 1 0 0 1 1 1 1 TIP49 C-terminus DUF815 PF05673.8 gi|257388941|ref|YP_003178714.1| - 0.0012 17.8 0.0 0.0027 16.6 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF815) IstB_IS21 PF01695.12 gi|257388941|ref|YP_003178714.1| - 0.0013 18.1 0.0 0.0033 16.8 0.0 1.7 1 0 0 1 1 1 1 IstB-like ATP binding protein Mg_chelatase PF01078.16 gi|257388941|ref|YP_003178714.1| - 0.0023 17.0 0.2 0.0065 15.6 0.1 1.7 1 1 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_11 PF13086.1 gi|257388941|ref|YP_003178714.1| - 0.003 17.1 0.6 0.14 11.6 0.0 2.4 2 0 0 2 2 2 1 AAA domain Sigma54_activat PF00158.21 gi|257388941|ref|YP_003178714.1| - 0.0051 16.3 0.1 0.044 13.2 0.0 2.4 2 1 0 2 2 2 1 Sigma-54 interaction domain AAA_3 PF07726.6 gi|257388941|ref|YP_003178714.1| - 0.0066 16.0 0.8 0.022 14.3 0.0 2.3 3 1 0 3 3 2 1 ATPase family associated with various cellular activities (AAA) AAA_25 PF13481.1 gi|257388941|ref|YP_003178714.1| - 0.0081 15.5 5.7 0.14 11.5 0.1 3.3 2 1 0 3 3 3 1 AAA domain AAA_23 PF13476.1 gi|257388941|ref|YP_003178714.1| - 0.0083 16.4 5.0 6.2 7.0 0.0 2.5 2 0 0 2 2 2 0 AAA domain Sigma54_activ_2 PF14532.1 gi|257388941|ref|YP_003178714.1| - 0.0083 16.1 0.1 0.043 13.8 0.0 2.4 3 1 0 3 3 1 1 Sigma-54 interaction domain Zeta_toxin PF06414.7 gi|257388941|ref|YP_003178714.1| - 0.0086 15.1 0.3 0.024 13.7 0.0 1.9 2 0 0 2 2 2 1 Zeta toxin AAA_28 PF13521.1 gi|257388941|ref|YP_003178714.1| - 0.009 15.9 1.5 0.019 14.9 0.0 2.3 2 1 0 2 2 1 1 AAA domain CPT PF07931.7 gi|257388941|ref|YP_003178714.1| - 0.0092 15.6 0.0 0.021 14.4 0.0 1.7 1 0 0 1 1 1 1 Chloramphenicol phosphotransferase-like protein AAA_18 PF13238.1 gi|257388941|ref|YP_003178714.1| - 0.0094 16.2 3.8 0.024 14.9 0.0 2.7 2 1 0 2 2 2 1 AAA domain Torsin PF06309.6 gi|257388941|ref|YP_003178714.1| - 0.017 15.0 0.1 0.048 13.5 0.0 1.7 2 0 0 2 2 1 0 Torsin RNA_helicase PF00910.17 gi|257388941|ref|YP_003178714.1| - 0.022 14.9 0.0 0.065 13.4 0.0 1.9 1 0 0 1 1 1 0 RNA helicase Atg14 PF10186.4 gi|257388941|ref|YP_003178714.1| - 0.028 13.3 2.4 0.046 12.6 1.6 1.3 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 RapA_C PF12137.3 gi|257388941|ref|YP_003178714.1| - 0.028 13.2 4.7 0.12 11.1 2.7 2.1 2 0 0 2 2 2 0 RNA polymerase recycling family C-terminal KaiC PF06745.8 gi|257388941|ref|YP_003178714.1| - 0.03 13.4 3.0 0.73 8.9 0.0 3.2 2 1 1 3 3 3 0 KaiC ATG16 PF08614.6 gi|257388941|ref|YP_003178714.1| - 0.045 13.5 15.2 0.032 14.0 8.0 2.3 2 0 0 2 2 2 0 Autophagy protein 16 (ATG16) UPF0079 PF02367.12 gi|257388941|ref|YP_003178714.1| - 0.05 13.2 0.0 0.12 12.0 0.0 1.6 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 bZIP_1 PF00170.16 gi|257388941|ref|YP_003178714.1| - 0.053 13.4 13.0 0.42 10.6 3.7 2.6 1 1 1 2 2 2 0 bZIP transcription factor NB-ARC PF00931.17 gi|257388941|ref|YP_003178714.1| - 0.062 12.1 0.0 0.062 12.1 0.0 2.0 2 0 0 2 2 1 0 NB-ARC domain Fmp27_WPPW PF10359.4 gi|257388941|ref|YP_003178714.1| - 0.069 11.5 5.9 0.12 10.8 4.1 1.3 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain AAA_24 PF13479.1 gi|257388941|ref|YP_003178714.1| - 0.075 12.5 0.5 0.29 10.6 0.0 2.2 2 1 0 2 2 2 0 AAA domain ResIII PF04851.10 gi|257388941|ref|YP_003178714.1| - 0.11 12.2 1.7 1.3 8.8 0.0 2.4 1 1 1 2 2 2 0 Type III restriction enzyme, res subunit NTPase_1 PF03266.10 gi|257388941|ref|YP_003178714.1| - 0.12 12.0 4.4 0.21 11.2 0.1 3.1 3 1 0 3 3 3 0 NTPase ABC_tran PF00005.22 gi|257388941|ref|YP_003178714.1| - 0.13 12.5 4.8 0.31 11.3 0.0 2.8 2 1 0 2 2 2 0 ABC transporter ADIP PF11559.3 gi|257388941|ref|YP_003178714.1| - 0.18 11.6 9.3 0.39 10.6 6.5 1.5 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding DUF2075 PF09848.4 gi|257388941|ref|YP_003178714.1| - 0.18 10.7 3.9 0.47 9.3 0.0 2.3 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) TMF_DNA_bd PF12329.3 gi|257388941|ref|YP_003178714.1| - 0.34 10.7 12.3 1.2 9.0 8.5 1.8 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding IncA PF04156.9 gi|257388941|ref|YP_003178714.1| - 0.36 10.3 15.0 0.36 10.4 8.5 2.1 1 1 0 2 2 2 0 IncA protein DUF972 PF06156.8 gi|257388941|ref|YP_003178714.1| - 1.1 9.6 8.7 6.2 7.2 4.6 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF972) IFT46_B_C PF12317.3 gi|257388941|ref|YP_003178714.1| - 1.2 8.5 5.2 1.5 8.1 0.0 3.2 3 1 0 4 4 4 0 Intraflagellar transport complex B protein 46 C terminal DUF904 PF06005.7 gi|257388941|ref|YP_003178714.1| - 1.8 8.9 13.1 5.5 7.3 8.6 2.2 2 1 0 2 2 1 0 Protein of unknown function (DUF904) V_ATPase_I PF01496.14 gi|257388941|ref|YP_003178714.1| - 1.8 6.3 4.0 2.4 5.8 2.8 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family SlyX PF04102.7 gi|257388941|ref|YP_003178714.1| - 2.3 8.6 8.0 17 5.8 5.5 2.4 1 1 0 1 1 1 0 SlyX APG6 PF04111.7 gi|257388941|ref|YP_003178714.1| - 6.5 5.6 14.3 5.7 5.8 9.0 1.5 1 1 0 1 1 1 0 Autophagy protein Apg6 DsbD PF02683.10 gi|257388942|ref|YP_003178715.1| - 0.024 14.2 2.1 0.026 14.1 1.4 1.0 1 0 0 1 1 1 0 Cytochrome C biogenesis protein transmembrane region DUF3687 PF12459.3 gi|257388942|ref|YP_003178715.1| - 0.17 11.1 0.7 0.21 10.8 0.4 1.3 1 1 0 1 1 1 0 D-Ala-teichoic acid biosynthesis protein MtrF PF09472.5 gi|257388942|ref|YP_003178715.1| - 1.3 8.2 4.1 1.6 8.0 2.9 1.1 1 0 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) SIMPL PF04402.9 gi|257388943|ref|YP_003178716.1| - 8.6e-31 107.4 11.6 1.2e-30 107.0 8.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF541) Flg_hook PF02120.11 gi|257388943|ref|YP_003178716.1| - 0.016 14.8 0.1 0.043 13.4 0.0 1.8 1 0 0 1 1 1 0 Flagellar hook-length control protein FliK VKG_Carbox PF05090.9 gi|257388945|ref|YP_003178718.1| - 6.5e-08 31.8 1.0 8.6e-08 31.4 0.7 1.1 1 0 0 1 1 1 1 Vitamin K-dependent gamma-carboxylase PadR PF03551.9 gi|257388946|ref|YP_003178719.1| - 2.1e-05 24.1 0.0 3.6e-05 23.4 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.1 gi|257388946|ref|YP_003178719.1| - 0.011 15.5 0.0 0.013 15.3 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_20 PF12840.2 gi|257388946|ref|YP_003178719.1| - 0.019 14.7 0.0 0.029 14.1 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain IncA PF04156.9 gi|257388947|ref|YP_003178720.1| - 1.1 8.7 3.8 1.3 8.5 2.6 1.1 1 0 0 1 1 1 0 IncA protein Acyl-CoA_dh_1 PF00441.19 gi|257388948|ref|YP_003178721.1| - 1e-51 174.9 0.7 1.9e-51 174.1 0.5 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|257388948|ref|YP_003178721.1| - 2.8e-37 127.7 1.2 2.8e-37 127.7 0.8 1.9 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.6 gi|257388948|ref|YP_003178721.1| - 1.4e-25 90.1 0.4 3.1e-25 88.9 0.3 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|257388948|ref|YP_003178721.1| - 2.3e-16 59.0 0.0 5.7e-16 57.7 0.0 1.7 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain 3HCDH_N PF02737.13 gi|257388949|ref|YP_003178722.1| - 2.3e-61 206.5 3.6 3.1e-61 206.1 2.5 1.1 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.17 gi|257388949|ref|YP_003178722.1| - 2.9e-33 114.1 0.1 1.7e-32 111.6 0.0 2.3 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_Gly3P_dh_N PF01210.18 gi|257388949|ref|YP_003178722.1| - 2.2e-05 24.2 0.5 4.5e-05 23.2 0.4 1.5 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_2 PF03446.10 gi|257388949|ref|YP_003178722.1| - 0.00016 21.5 5.4 0.0007 19.4 3.1 2.3 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.12 gi|257388949|ref|YP_003178722.1| - 0.013 15.8 2.5 0.027 14.9 0.7 2.4 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent DAO PF01266.19 gi|257388949|ref|YP_003178722.1| - 0.015 14.2 1.4 0.028 13.3 1.0 1.4 1 0 0 1 1 1 0 FAD dependent oxidoreductase 2-Hacid_dh_C PF02826.14 gi|257388949|ref|YP_003178722.1| - 0.02 14.0 0.1 0.035 13.2 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|257388949|ref|YP_003178722.1| - 0.03 13.6 2.3 0.06 12.7 1.6 1.6 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Pyr_redox_2 PF07992.9 gi|257388949|ref|YP_003178722.1| - 0.084 12.7 0.1 0.13 12.1 0.1 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase XdhC_C PF13478.1 gi|257388949|ref|YP_003178722.1| - 0.1 12.8 0.3 0.19 12.0 0.2 1.5 1 0 0 1 1 1 0 XdhC Rossmann domain DUF2746 PF10874.3 gi|257388949|ref|YP_003178722.1| - 0.2 11.8 2.0 0.49 10.6 0.1 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF2746) Pyr_redox PF00070.22 gi|257388949|ref|YP_003178722.1| - 0.2 12.0 2.1 0.36 11.2 0.2 2.4 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_3 PF03447.11 gi|257388949|ref|YP_003178722.1| - 0.3 11.4 2.1 0.94 9.8 1.0 2.2 2 1 0 2 2 2 0 Homoserine dehydrogenase, NAD binding domain ThiF PF00899.16 gi|257388949|ref|YP_003178722.1| - 0.74 9.6 3.3 4 7.2 0.4 3.0 3 0 0 3 3 3 0 ThiF family DeoC PF01791.4 gi|257388950|ref|YP_003178723.1| - 8.5e-36 123.4 0.0 9.9e-36 123.2 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase PucR PF07905.6 gi|257388950|ref|YP_003178723.1| - 0.0081 15.7 0.0 0.61 9.6 0.0 2.8 3 0 0 3 3 3 1 Purine catabolism regulatory protein-like family Nif11 PF07862.6 gi|257388950|ref|YP_003178723.1| - 0.012 15.5 0.2 0.88 9.5 0.0 3.1 3 0 0 3 3 3 0 Nitrogen fixation protein of unknown function FBPase PF00316.15 gi|257388951|ref|YP_003178724.1| - 2.1e-64 217.3 0.0 2.6e-64 217.1 0.0 1.0 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase Inositol_P PF00459.20 gi|257388951|ref|YP_003178724.1| - 0.00087 18.6 0.1 0.0045 16.3 0.1 1.9 2 0 0 2 2 2 1 Inositol monophosphatase family Carboxyl_trans PF01039.17 gi|257388952|ref|YP_003178725.1| - 3e-128 428.2 0.0 3.8e-128 427.9 0.0 1.0 1 0 0 1 1 1 1 Carboxyl transferase domain PagP PF07017.6 gi|257388953|ref|YP_003178726.1| - 0.045 13.0 0.0 0.057 12.7 0.0 1.2 1 0 0 1 1 1 0 Antimicrobial peptide resistance and lipid A acylation protein PagP MaoC_dehydratas PF01575.14 gi|257388954|ref|YP_003178727.1| - 3.1e-24 84.7 0.2 4e-24 84.3 0.1 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.1 gi|257388954|ref|YP_003178727.1| - 1.9e-05 24.4 0.6 6.2e-05 22.7 0.4 1.7 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase HATPase_c PF02518.21 gi|257388955|ref|YP_003178728.1| - 9.8e-22 76.7 0.4 5.2e-21 74.4 0.1 2.1 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_2 PF13185.1 gi|257388955|ref|YP_003178728.1| - 1.4e-16 61.2 5.1 1.2e-08 35.5 0.1 3.0 3 0 0 3 3 3 2 GAF domain GAF_3 PF13492.1 gi|257388955|ref|YP_003178728.1| - 2.7e-12 46.9 1.1 4.8e-07 29.9 0.0 3.1 3 0 0 3 3 3 2 GAF domain GAF PF01590.21 gi|257388955|ref|YP_003178728.1| - 5.2e-12 46.1 1.2 2.8e-08 34.0 0.1 2.8 2 0 0 2 2 2 2 GAF domain HisKA PF00512.20 gi|257388955|ref|YP_003178728.1| - 7.6e-11 41.8 1.2 7.6e-11 41.8 0.8 2.5 1 1 1 2 2 2 1 His Kinase A (phospho-acceptor) domain DUF2930 PF11152.3 gi|257388955|ref|YP_003178728.1| - 4e-07 29.3 0.0 0.00077 18.6 0.0 2.3 2 0 0 2 2 2 2 Protein of unknown function (DUF2930) PAS_3 PF08447.6 gi|257388955|ref|YP_003178728.1| - 1.4e-06 28.3 0.0 3.6e-06 26.9 0.0 1.7 1 0 0 1 1 1 1 PAS fold HATPase_c_2 PF13581.1 gi|257388955|ref|YP_003178728.1| - 9.8e-05 22.1 0.2 0.00046 19.9 0.0 2.2 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.1 gi|257388955|ref|YP_003178728.1| - 0.0001 21.9 0.0 0.00023 20.8 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Bac_DnaA PF00308.13 gi|257388955|ref|YP_003178728.1| - 0.018 14.7 0.0 0.069 12.7 0.0 1.9 2 0 0 2 2 2 0 Bacterial dnaA protein NOB1_Zn_bind PF08772.6 gi|257388956|ref|YP_003178729.1| - 0.0025 17.6 1.6 0.0052 16.5 1.1 1.4 1 0 0 1 1 1 1 Nin one binding (NOB1) Zn-ribbon like Prok-RING_1 PF14446.1 gi|257388956|ref|YP_003178729.1| - 0.0046 16.6 0.3 0.0088 15.7 0.2 1.4 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 zf-ribbon_3 PF13248.1 gi|257388956|ref|YP_003178729.1| - 0.005 15.9 2.3 0.0098 15.0 1.6 1.4 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|257388956|ref|YP_003178729.1| - 0.011 15.5 1.3 0.019 14.7 0.9 1.4 1 0 0 1 1 1 0 Double zinc ribbon HypA PF01155.14 gi|257388956|ref|YP_003178729.1| - 0.013 15.1 0.3 0.026 14.2 0.2 1.4 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zinc_ribbon_2 PF13240.1 gi|257388956|ref|YP_003178729.1| - 0.05 13.0 0.2 0.05 13.0 0.2 1.6 2 0 0 2 2 2 0 zinc-ribbon domain RNA_POL_M_15KD PF02150.11 gi|257388956|ref|YP_003178729.1| - 0.52 10.0 2.1 6.3 6.5 0.3 2.2 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit ABC_tran PF00005.22 gi|257388957|ref|YP_003178730.1| - 1.7e-15 57.5 0.2 9.4e-15 55.1 0.1 1.9 1 1 0 1 1 1 1 ABC transporter SMC_N PF02463.14 gi|257388957|ref|YP_003178730.1| - 2e-06 27.2 1.9 0.0043 16.3 0.1 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.1 gi|257388957|ref|YP_003178730.1| - 3.4e-05 23.9 0.3 0.0011 19.0 0.2 2.2 1 1 0 1 1 1 1 AAA domain AAA PF00004.24 gi|257388957|ref|YP_003178730.1| - 0.00012 22.2 0.1 0.13 12.4 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|257388957|ref|YP_003178730.1| - 0.00027 21.7 1.2 0.0018 19.1 0.8 2.5 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|257388957|ref|YP_003178730.1| - 0.0017 17.8 0.1 0.0032 16.9 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|257388957|ref|YP_003178730.1| - 0.0031 17.6 0.0 0.4 10.8 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_5 PF07728.9 gi|257388957|ref|YP_003178730.1| - 0.0037 16.9 0.0 1.9 8.1 0.0 2.6 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_23 PF13476.1 gi|257388957|ref|YP_003178730.1| - 0.0059 16.9 5.7 0.16 12.3 3.9 2.3 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|257388957|ref|YP_003178730.1| - 0.018 14.9 0.0 0.026 14.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain SKI PF01202.17 gi|257388957|ref|YP_003178730.1| - 0.019 14.8 0.5 0.044 13.6 0.0 1.9 2 0 0 2 2 2 0 Shikimate kinase AAA_28 PF13521.1 gi|257388957|ref|YP_003178730.1| - 0.041 13.8 0.2 0.88 9.5 0.0 2.7 3 0 0 3 3 3 0 AAA domain DUF3186 PF11382.3 gi|257388957|ref|YP_003178730.1| - 0.063 12.4 0.0 0.14 11.2 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3186) AAA_25 PF13481.1 gi|257388957|ref|YP_003178730.1| - 0.089 12.1 0.0 0.29 10.5 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_13 PF13166.1 gi|257388957|ref|YP_003178730.1| - 0.1 11.0 1.5 0.23 9.8 1.1 1.6 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.1 gi|257388957|ref|YP_003178730.1| - 0.12 12.7 3.1 0.16 12.3 0.0 2.7 4 1 0 4 4 4 0 AAA domain AAA_10 PF12846.2 gi|257388957|ref|YP_003178730.1| - 1 8.7 5.6 2.9 7.2 3.9 1.7 1 1 0 1 1 1 0 AAA-like domain UPF0051 PF01458.12 gi|257388958|ref|YP_003178731.1| - 7.1e-70 235.0 0.4 1.1e-69 234.4 0.3 1.3 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) HWE_HK PF07536.9 gi|257388958|ref|YP_003178731.1| - 0.082 13.3 0.0 0.17 12.3 0.0 1.4 1 0 0 1 1 1 0 HWE histidine kinase UPF0051 PF01458.12 gi|257388959|ref|YP_003178732.1| - 3.8e-65 219.5 1.5 4.6e-65 219.2 1.1 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) PKD PF00801.15 gi|257388960|ref|YP_003178733.1| - 2.8e-35 119.8 19.6 7.9e-20 70.3 3.4 4.5 2 1 2 4 4 4 2 PKD domain CBM_5_12 PF02839.9 gi|257388960|ref|YP_003178733.1| - 2.3e-22 78.2 28.2 5.4e-13 48.2 5.3 3.5 4 0 0 4 4 4 2 Carbohydrate binding domain Glyco_hydro_18 PF00704.23 gi|257388960|ref|YP_003178733.1| - 7.7e-07 28.8 3.1 1.6e-05 24.5 0.2 2.7 2 1 0 3 3 3 1 Glycosyl hydrolases family 18 CBM_5_12_2 PF14600.1 gi|257388960|ref|YP_003178733.1| - 3.7e-06 26.4 17.6 0.0025 17.4 1.5 3.4 3 0 0 3 3 3 2 Cellulose-binding domain DUF4625 PF15418.1 gi|257388960|ref|YP_003178733.1| - 0.0027 17.8 1.9 0.86 9.7 0.0 2.8 3 0 0 3 3 3 2 Domain of unknown function (DUF4625) Y_Y_Y PF07495.8 gi|257388960|ref|YP_003178733.1| - 0.0033 17.1 0.2 1 9.1 0.0 2.7 2 0 0 2 2 2 1 Y_Y_Y domain ChitinaseA_N PF08329.5 gi|257388960|ref|YP_003178733.1| - 0.02 14.6 3.6 0.33 10.7 0.5 2.6 2 0 0 2 2 2 0 Chitinase A, N-terminal domain Cadherin PF00028.12 gi|257388960|ref|YP_003178733.1| - 0.032 14.4 1.1 8.6 6.6 0.1 2.7 2 0 0 2 2 2 0 Cadherin domain Big_3_2 PF12245.3 gi|257388960|ref|YP_003178733.1| - 0.066 12.7 1.2 10 5.7 0.1 3.0 2 0 0 2 2 2 0 Bacterial Ig-like domain (group 3) Glyco_hydro_18 PF00704.23 gi|257388961|ref|YP_003178734.1| - 3.4e-74 250.3 4.8 3.4e-74 250.3 3.4 1.9 2 0 0 2 2 2 1 Glycosyl hydrolases family 18 CBM_5_12 PF02839.9 gi|257388961|ref|YP_003178734.1| - 1.1e-23 82.5 31.2 1.8e-12 46.6 4.9 3.3 3 0 0 3 3 3 2 Carbohydrate binding domain PKD PF00801.15 gi|257388961|ref|YP_003178734.1| - 2e-11 43.4 0.8 7.4e-11 41.6 0.6 2.0 1 0 0 1 1 1 1 PKD domain Big_3_4 PF13754.1 gi|257388961|ref|YP_003178734.1| - 2.6e-07 30.8 2.4 1.1e-06 28.8 1.7 2.1 1 0 0 1 1 1 1 Bacterial Ig-like domain (group 3) CBM_5_12_2 PF14600.1 gi|257388961|ref|YP_003178734.1| - 0.00038 20.0 9.1 0.063 12.9 1.1 3.2 3 0 0 3 3 3 2 Cellulose-binding domain BiPBP_C PF06832.7 gi|257388961|ref|YP_003178734.1| - 0.002 18.0 0.0 0.0049 16.7 0.0 1.6 1 0 0 1 1 1 1 Penicillin-Binding Protein C-terminus Family DUF4625 PF15418.1 gi|257388961|ref|YP_003178734.1| - 0.049 13.7 0.1 0.16 12.0 0.0 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4625) Glyco_hydro_18 PF00704.23 gi|257388962|ref|YP_003178735.1| - 6.2e-75 252.7 2.9 6.2e-75 252.7 2.0 1.9 2 1 0 2 2 2 1 Glycosyl hydrolases family 18 CBM_5_12 PF02839.9 gi|257388962|ref|YP_003178735.1| - 1.8e-22 78.6 28.7 3.3e-12 45.7 8.0 2.9 2 0 0 2 2 2 2 Carbohydrate binding domain PKD PF00801.15 gi|257388962|ref|YP_003178735.1| - 1.2e-11 44.2 1.8 1.2e-11 44.2 1.2 2.9 4 0 0 4 4 4 1 PKD domain CBM_5_12_2 PF14600.1 gi|257388962|ref|YP_003178735.1| - 4e-06 26.3 17.8 0.00064 19.3 3.2 3.3 3 0 0 3 3 3 2 Cellulose-binding domain Big_3_4 PF13754.1 gi|257388962|ref|YP_003178735.1| - 0.00061 20.0 1.3 0.00061 20.0 0.9 2.8 3 0 0 3 3 3 1 Bacterial Ig-like domain (group 3) REJ PF02010.10 gi|257388962|ref|YP_003178735.1| - 0.0012 17.2 0.9 0.011 14.0 0.6 2.0 1 1 0 1 1 1 1 REJ domain CBM_5_12 PF02839.9 gi|257388963|ref|YP_003178736.1| - 6e-26 89.7 24.0 1.3e-13 50.3 3.9 3.7 3 0 0 3 3 3 2 Carbohydrate binding domain PKD PF00801.15 gi|257388963|ref|YP_003178736.1| - 9.8e-17 60.4 8.5 3e-16 58.9 5.9 1.9 1 0 0 1 1 1 1 PKD domain CBM_5_12_2 PF14600.1 gi|257388963|ref|YP_003178736.1| - 7.1e-10 38.3 10.8 6.9e-05 22.3 1.3 3.4 2 0 0 2 2 2 2 Cellulose-binding domain ChitinaseA_N PF08329.5 gi|257388963|ref|YP_003178736.1| - 0.0047 16.7 2.2 0.011 15.5 1.5 1.6 1 0 0 1 1 1 1 Chitinase A, N-terminal domain Ferritin_2 PF13668.1 gi|257388964|ref|YP_003178737.1| - 0.0036 17.2 1.3 0.089 12.7 0.1 2.0 1 1 1 2 2 2 1 Ferritin-like domain Rubrerythrin PF02915.12 gi|257388964|ref|YP_003178737.1| - 0.0043 17.3 1.1 0.0063 16.8 0.7 1.4 1 1 0 1 1 1 1 Rubrerythrin Transglut_i_TM PF14400.1 gi|257388964|ref|YP_003178737.1| - 0.021 14.3 0.2 0.032 13.7 0.2 1.3 1 0 0 1 1 1 0 Inactive transglutaminase fused to 7 transmembrane helices Exonuc_VII_S PF02609.11 gi|257388964|ref|YP_003178737.1| - 0.021 14.5 0.5 0.07 12.9 0.3 1.9 1 0 0 1 1 1 0 Exonuclease VII small subunit FdhE PF04216.7 gi|257388964|ref|YP_003178737.1| - 0.098 12.3 0.6 0.25 11.0 0.4 1.5 1 1 1 2 2 2 0 Protein involved in formate dehydrogenase formation DUF3416 PF11896.3 gi|257388964|ref|YP_003178737.1| - 0.35 10.7 3.4 0.31 10.9 0.9 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF3416) Ferritin PF00210.19 gi|257388964|ref|YP_003178737.1| - 3 7.6 6.2 1.4 8.6 0.4 1.7 1 1 1 2 2 2 0 Ferritin-like domain Fe_dep_repress PF01325.14 gi|257388965|ref|YP_003178738.1| - 3.6e-19 68.4 0.1 6.9e-19 67.5 0.1 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repr_C PF02742.10 gi|257388965|ref|YP_003178738.1| - 2.4e-10 39.9 0.2 4e-10 39.2 0.1 1.4 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain HTH_27 PF13463.1 gi|257388965|ref|YP_003178738.1| - 3.2e-06 27.3 0.0 5.3e-06 26.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.1 gi|257388965|ref|YP_003178738.1| - 1.5e-05 24.6 0.0 7.2e-05 22.4 0.0 2.1 2 1 0 2 2 2 1 Crp-like helix-turn-helix domain MarR_2 PF12802.2 gi|257388965|ref|YP_003178738.1| - 4.7e-05 22.9 0.0 9.1e-05 22.0 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.1 gi|257388965|ref|YP_003178738.1| - 0.00019 20.7 0.0 0.00037 19.8 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|257388965|ref|YP_003178738.1| - 0.00036 20.1 0.0 0.0007 19.2 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|257388965|ref|YP_003178738.1| - 0.00076 19.1 0.0 0.0013 18.3 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|257388965|ref|YP_003178738.1| - 0.0017 18.0 0.0 0.0034 17.1 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Rrf2 PF02082.15 gi|257388965|ref|YP_003178738.1| - 0.0038 17.3 0.0 0.0061 16.6 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator HTH_IclR PF09339.5 gi|257388965|ref|YP_003178738.1| - 0.013 15.0 0.0 0.025 14.1 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|257388965|ref|YP_003178738.1| - 0.022 14.4 0.0 0.042 13.5 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_AsnC-type PF13404.1 gi|257388965|ref|YP_003178738.1| - 0.038 13.5 0.0 0.12 11.9 0.0 1.8 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain DUF4423 PF14394.1 gi|257388965|ref|YP_003178738.1| - 0.056 12.9 0.0 0.085 12.3 0.0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4423) DUF2250 PF10007.4 gi|257388965|ref|YP_003178738.1| - 0.058 13.2 0.0 0.087 12.7 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Aminotran_4 PF01063.14 gi|257388967|ref|YP_003178740.1| - 7.6e-44 149.8 0.0 9.4e-44 149.5 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class IV GATase PF00117.23 gi|257388968|ref|YP_003178741.1| - 8.7e-43 146.0 0.0 1.1e-42 145.6 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|257388968|ref|YP_003178741.1| - 3.3e-05 23.4 0.3 8e-05 22.1 0.1 1.8 2 1 0 2 2 2 1 Peptidase C26 Chorismate_bind PF00425.13 gi|257388969|ref|YP_003178742.1| - 1.6e-99 332.4 0.0 2.1e-99 332.0 0.0 1.1 1 0 0 1 1 1 1 chorismate binding enzyme Anth_synt_I_N PF04715.8 gi|257388969|ref|YP_003178742.1| - 2.2e-10 40.6 0.0 6.3e-10 39.2 0.0 1.8 1 0 0 1 1 1 1 Anthranilate synthase component I, N terminal region HHH_5 PF14520.1 gi|257388970|ref|YP_003178743.1| - 1.8e-11 44.0 0.1 3.6e-11 43.0 0.1 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix domain DUF4332 PF14229.1 gi|257388970|ref|YP_003178743.1| - 1.1e-06 28.6 0.1 8.2e-06 25.7 0.0 2.0 1 1 1 2 2 2 1 Domain of unknown function (DUF4332) Cdd1 PF11731.3 gi|257388970|ref|YP_003178743.1| - 0.00091 19.1 0.0 0.0013 18.6 0.0 1.2 1 0 0 1 1 1 1 Pathogenicity locus IMS_HHH PF11798.3 gi|257388970|ref|YP_003178743.1| - 0.0016 18.3 0.0 0.0028 17.5 0.0 1.4 1 0 0 1 1 1 1 IMS family HHH motif DNA_pol_lambd_f PF10391.4 gi|257388970|ref|YP_003178743.1| - 0.0028 17.1 0.0 0.0046 16.4 0.0 1.3 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda Sec63 PF02889.11 gi|257388970|ref|YP_003178743.1| - 0.0066 15.7 0.0 0.015 14.5 0.0 1.5 1 1 1 2 2 2 1 Sec63 Brl domain TfoX_C PF04994.8 gi|257388970|ref|YP_003178743.1| - 0.076 12.9 0.0 0.12 12.3 0.0 1.2 1 0 0 1 1 1 0 TfoX C-terminal domain BAF PF02961.9 gi|257388970|ref|YP_003178743.1| - 0.11 12.8 0.0 0.19 12.0 0.0 1.3 1 0 0 1 1 1 0 Barrier to autointegration factor Cwf_Cwc_15 PF04889.7 gi|257388970|ref|YP_003178743.1| - 1.1 8.8 4.6 1.5 8.4 3.2 1.1 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein Shikimate_dh_N PF08501.6 gi|257388971|ref|YP_003178744.1| - 1.8e-27 95.1 0.0 3.5e-27 94.2 0.0 1.5 1 0 0 1 1 1 1 Shikimate dehydrogenase substrate binding domain Shikimate_DH PF01488.15 gi|257388971|ref|YP_003178744.1| - 2.3e-14 53.6 0.0 3.3e-14 53.1 0.0 1.2 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase NAD_binding_10 PF13460.1 gi|257388971|ref|YP_003178744.1| - 0.00013 21.9 2.1 0.00029 20.8 1.5 1.6 1 0 0 1 1 1 1 NADH(P)-binding F420_oxidored PF03807.12 gi|257388971|ref|YP_003178744.1| - 0.00038 20.8 0.1 0.00071 19.9 0.1 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.7 gi|257388971|ref|YP_003178744.1| - 0.00059 19.2 0.1 0.001 18.5 0.1 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain 2-Hacid_dh_C PF02826.14 gi|257388971|ref|YP_003178744.1| - 0.0012 18.0 0.1 0.0022 17.1 0.1 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|257388971|ref|YP_003178744.1| - 0.0031 17.3 0.1 0.0045 16.8 0.1 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Saccharop_dh PF03435.13 gi|257388971|ref|YP_003178744.1| - 0.0037 16.3 0.8 0.0055 15.7 0.5 1.2 1 0 0 1 1 1 1 Saccharopine dehydrogenase AdoHcyase_NAD PF00670.16 gi|257388971|ref|YP_003178744.1| - 0.05 13.4 1.2 0.076 12.8 0.8 1.2 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain THF_DHG_CYH_C PF02882.14 gi|257388971|ref|YP_003178744.1| - 0.052 12.6 0.1 0.16 11.0 0.1 1.8 1 1 0 1 1 1 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain NAD_Gly3P_dh_N PF01210.18 gi|257388971|ref|YP_003178744.1| - 0.074 12.7 0.1 0.12 12.1 0.1 1.3 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 3HCDH_N PF02737.13 gi|257388971|ref|YP_003178744.1| - 0.096 12.3 0.9 0.17 11.5 0.6 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox_2 PF07992.9 gi|257388971|ref|YP_003178744.1| - 0.097 12.5 0.2 0.14 11.9 0.1 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|257388971|ref|YP_003178744.1| - 0.4 9.4 1.8 0.51 9.1 1.2 1.1 1 0 0 1 1 1 0 Glucose inhibited division protein A Na_Ca_ex PF01699.19 gi|257388972|ref|YP_003178745.1| - 5.8e-12 45.3 18.8 1.6e-06 27.7 2.8 2.5 2 0 0 2 2 2 2 Sodium/calcium exchanger protein tRNA_deacylase PF04414.7 gi|257388973|ref|YP_003178746.1| - 1.5e-62 210.5 0.0 2e-62 210.0 0.0 1.1 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase Tubulin PF00091.20 gi|257388974|ref|YP_003178747.1| - 5.9e-35 121.0 0.5 1.6e-34 119.6 0.4 1.7 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.3 gi|257388974|ref|YP_003178747.1| - 5.5e-34 116.1 6.3 9.3e-34 115.3 0.3 3.5 4 0 0 4 4 4 1 FtsZ family, C-terminal domain Cpn10 PF00166.16 gi|257388974|ref|YP_003178747.1| - 0.088 12.7 2.7 4.6 7.2 0.5 2.7 2 0 0 2 2 2 0 Chaperonin 10 Kd subunit EIIA-man PF03610.11 gi|257388974|ref|YP_003178747.1| - 0.11 12.5 0.7 0.96 9.5 0.0 2.6 3 0 0 3 3 3 0 PTS system fructose IIA component ThiF PF00899.16 gi|257388974|ref|YP_003178747.1| - 0.14 12.0 2.2 0.3 10.8 1.2 1.9 1 1 0 1 1 1 0 ThiF family Tubulin_2 PF13809.1 gi|257388974|ref|YP_003178747.1| - 2.7 6.8 5.5 0.79 8.5 1.1 2.1 1 1 1 2 2 2 0 Tubulin like ThiW PF09512.5 gi|257388975|ref|YP_003178748.1| - 0.0096 15.7 2.2 0.015 15.1 1.5 1.4 1 1 0 1 1 1 1 Thiamine-precursor transporter protein (ThiW) MARVEL PF01284.18 gi|257388975|ref|YP_003178748.1| - 0.22 11.3 2.9 0.28 10.9 2.0 1.1 1 0 0 1 1 1 0 Membrane-associating domain PsbX PF06596.6 gi|257388976|ref|YP_003178749.1| - 0.41 10.3 3.0 0.59 9.8 2.1 1.4 1 0 0 1 1 1 0 Photosystem II reaction centre X protein (PsbX) Spt5-NGN PF03439.8 gi|257388977|ref|YP_003178750.1| - 5.3e-24 83.7 0.1 8.4e-24 83.1 0.1 1.3 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.24 gi|257388977|ref|YP_003178750.1| - 1.8e-07 30.5 0.6 4.6e-07 29.3 0.1 1.9 2 0 0 2 2 2 1 KOW motif NusG PF02357.14 gi|257388977|ref|YP_003178750.1| - 0.0078 16.4 0.0 0.12 12.6 0.0 2.2 1 1 0 1 1 1 1 Transcription termination factor nusG DbpA PF03880.10 gi|257388977|ref|YP_003178750.1| - 0.17 11.6 0.3 0.93 9.2 0.1 2.0 2 0 0 2 2 2 0 DbpA RNA binding domain UCR_Fe-S_N PF10399.4 gi|257388978|ref|YP_003178751.1| - 0.79 8.9 3.1 0.34 10.0 0.3 1.8 2 0 0 2 2 2 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal ABC_tran PF00005.22 gi|257388979|ref|YP_003178752.1| - 4.4e-26 91.8 0.0 5.9e-26 91.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|257388979|ref|YP_003178752.1| - 2.5e-11 44.0 0.1 2.6e-07 30.8 0.0 2.1 2 0 0 2 2 2 2 AAA domain MobB PF03205.9 gi|257388979|ref|YP_003178752.1| - 0.0074 15.9 0.0 0.14 11.8 0.0 2.2 2 0 0 2 2 2 1 Molybdopterin guanine dinucleotide synthesis protein B DUF258 PF03193.11 gi|257388979|ref|YP_003178752.1| - 0.0079 15.3 0.0 0.012 14.8 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_29 PF13555.1 gi|257388979|ref|YP_003178752.1| - 0.0085 15.6 0.0 0.017 14.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|257388979|ref|YP_003178752.1| - 0.0085 15.5 0.1 0.043 13.2 0.0 1.9 1 1 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.18 gi|257388979|ref|YP_003178752.1| - 0.022 14.6 0.0 0.064 13.2 0.0 2.0 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_23 PF13476.1 gi|257388979|ref|YP_003178752.1| - 0.067 13.5 0.0 0.093 13.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.1 gi|257388979|ref|YP_003178752.1| - 0.083 12.8 0.1 0.24 11.3 0.0 1.9 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_10 PF12846.2 gi|257388979|ref|YP_003178752.1| - 0.1 12.0 0.0 0.14 11.5 0.0 1.3 1 0 0 1 1 1 0 AAA-like domain ArgK PF03308.11 gi|257388979|ref|YP_003178752.1| - 0.12 11.1 0.0 0.19 10.4 0.0 1.3 1 0 0 1 1 1 0 ArgK protein SRP54 PF00448.17 gi|257388979|ref|YP_003178752.1| - 0.15 11.5 0.0 0.2 11.0 0.0 1.2 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain ABC2_membrane_2 PF12679.2 gi|257388980|ref|YP_003178753.1| - 2.3e-29 102.1 9.2 6.9e-29 100.5 6.4 1.7 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|257388980|ref|YP_003178753.1| - 5.2e-10 38.8 16.4 1.2e-09 37.7 11.3 1.7 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|257388980|ref|YP_003178753.1| - 3.1e-05 23.1 13.6 6.5e-05 22.1 9.4 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.19 gi|257388980|ref|YP_003178753.1| - 0.00087 18.5 9.1 0.0014 17.8 6.3 1.4 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_5 PF13346.1 gi|257388980|ref|YP_003178753.1| - 0.0016 17.7 1.2 0.0028 16.9 0.8 1.4 1 0 0 1 1 1 1 ABC-2 family transporter protein DUF2789 PF10982.3 gi|257388981|ref|YP_003178754.1| - 0.05 13.6 0.0 0.083 12.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2789) NTF2 PF02136.15 gi|257388981|ref|YP_003178754.1| - 0.075 13.4 0.0 0.11 12.8 0.0 1.2 1 0 0 1 1 1 0 Nuclear transport factor 2 (NTF2) domain IncA PF04156.9 gi|257388982|ref|YP_003178755.1| - 0.044 13.3 0.4 0.044 13.3 0.3 1.5 2 0 0 2 2 2 0 IncA protein Frag1 PF10277.4 gi|257388982|ref|YP_003178755.1| - 0.085 12.3 0.3 0.11 12.0 0.2 1.1 1 0 0 1 1 1 0 Frag1/DRAM/Sfk1 family DUF1614 PF07758.6 gi|257388982|ref|YP_003178755.1| - 0.091 12.4 3.3 0.11 12.1 2.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1614) DUF3522 PF12036.3 gi|257388982|ref|YP_003178755.1| - 0.15 11.7 1.0 0.27 11.0 0.5 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF3522) Pmp3 PF01679.12 gi|257388982|ref|YP_003178755.1| - 0.22 11.2 0.4 0.22 11.2 0.3 2.7 3 0 0 3 3 3 0 Proteolipid membrane potential modulator Ndc1_Nup PF09531.5 gi|257388982|ref|YP_003178755.1| - 1.6 7.0 5.4 1.8 6.8 3.7 1.0 1 0 0 1 1 1 0 Nucleoporin protein Ndc1-Nup DUF3148 PF11347.3 gi|257388983|ref|YP_003178756.1| - 0.018 14.6 1.6 1.9 8.1 0.0 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF3148) DUF4112 PF13430.1 gi|257388984|ref|YP_003178757.1| - 0.014 15.3 0.5 0.016 15.0 0.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4112) PsbI PF02532.9 gi|257388984|ref|YP_003178757.1| - 0.42 10.2 2.0 0.9 9.2 1.4 1.5 1 0 0 1 1 1 0 Photosystem II reaction centre I protein (PSII 4.8 kDa protein) DUF21 PF01595.15 gi|257388984|ref|YP_003178757.1| - 5 6.3 9.0 19 4.5 4.9 2.2 1 1 0 1 1 1 0 Domain of unknown function DUF21 End_N_terminal PF12218.3 gi|257388985|ref|YP_003178758.1| - 0.021 14.2 0.0 0.034 13.6 0.0 1.3 1 0 0 1 1 1 0 N terminal extension of bacteriophage endosialidase EF-hand_7 PF13499.1 gi|257388985|ref|YP_003178758.1| - 0.021 14.9 0.0 0.022 14.9 0.0 1.2 1 0 0 1 1 1 0 EF-hand domain pair PadR PF03551.9 gi|257388986|ref|YP_003178759.1| - 5.9e-09 35.5 0.0 8.7e-09 35.0 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family FUR PF01475.14 gi|257388986|ref|YP_003178759.1| - 0.00012 21.9 0.0 0.00017 21.4 0.0 1.2 1 0 0 1 1 1 1 Ferric uptake regulator family MarR_2 PF12802.2 gi|257388986|ref|YP_003178759.1| - 0.00033 20.2 0.0 0.00079 19.0 0.0 1.7 1 1 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|257388986|ref|YP_003178759.1| - 0.00094 19.4 0.0 0.0019 18.4 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_45 PF14947.1 gi|257388986|ref|YP_003178759.1| - 0.0025 17.6 0.0 0.0037 17.0 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_34 PF13601.1 gi|257388986|ref|YP_003178759.1| - 0.011 15.8 0.0 0.019 14.9 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain TrmB PF01978.14 gi|257388986|ref|YP_003178759.1| - 0.013 15.2 0.0 0.024 14.3 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|257388986|ref|YP_003178759.1| - 0.022 14.4 0.0 0.045 13.4 0.0 1.5 1 0 0 1 1 1 0 HTH domain HTH_5 PF01022.15 gi|257388986|ref|YP_003178759.1| - 0.047 13.3 0.0 0.076 12.7 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Rrf2 PF02082.15 gi|257388986|ref|YP_003178759.1| - 0.1 12.7 0.0 0.16 12.0 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator COX1 PF00115.15 gi|257388987|ref|YP_003178760.1| - 3.8e-146 487.2 53.9 4.6e-146 486.9 37.4 1.0 1 0 0 1 1 1 1 Cytochrome C and Quinol oxidase polypeptide I MFS_1 PF07690.11 gi|257388988|ref|YP_003178761.1| - 0.0045 15.7 1.4 0.0045 15.7 1.0 3.3 1 1 0 3 3 3 2 Major Facilitator Superfamily DUF318 PF03773.8 gi|257388989|ref|YP_003178762.1| - 1e-48 165.9 11.4 1.9e-48 165.0 7.9 1.4 1 1 0 1 1 1 1 Predicted permease HMA PF00403.21 gi|257388990|ref|YP_003178763.1| - 1.8e-05 24.7 1.9 2.1e-05 24.5 1.3 1.1 1 0 0 1 1 1 1 Heavy-metal-associated domain TF_Zn_Ribbon PF08271.7 gi|257388990|ref|YP_003178763.1| - 0.046 13.0 0.4 0.046 13.0 0.3 1.7 2 0 0 2 2 2 0 TFIIB zinc-binding PQQ_2 PF13360.1 gi|257388991|ref|YP_003178764.1| - 2e-07 30.7 7.1 5.5e-07 29.2 4.9 1.8 1 1 0 1 1 1 1 PQQ-like domain PQQ_3 PF13570.1 gi|257388991|ref|YP_003178764.1| - 0.0016 18.6 2.2 0.0016 18.6 1.5 4.5 3 2 0 3 3 3 1 PQQ-like domain TAT_signal PF10518.4 gi|257388991|ref|YP_003178764.1| - 0.059 13.3 0.3 0.15 12.1 0.2 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence NHL PF01436.16 gi|257388991|ref|YP_003178764.1| - 0.29 11.1 11.6 2.8 8.0 1.1 4.8 4 0 0 4 4 4 0 NHL repeat DUF2182 PF09948.4 gi|257388992|ref|YP_003178765.1| - 4e-35 121.4 7.8 4e-35 121.4 5.4 1.5 2 0 0 2 2 2 1 Predicted metal-binding integral membrane protein (DUF2182) DUF973 PF06157.6 gi|257388992|ref|YP_003178765.1| - 0.069 12.1 0.2 0.14 11.1 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF973) DUF4536 PF15055.1 gi|257388992|ref|YP_003178765.1| - 0.094 12.7 0.1 0.094 12.7 0.0 2.5 3 0 0 3 3 3 0 Domain of unknown function (DUF4536) Baculo_PEP_C PF04513.7 gi|257388993|ref|YP_003178766.1| - 0.13 12.0 0.0 0.28 11.0 0.0 1.6 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF389 PF04087.9 gi|257388994|ref|YP_003178767.1| - 7.1e-28 97.2 17.3 7.1e-28 97.2 12.0 2.4 2 1 1 3 3 3 1 Domain of unknown function (DUF389) PHP_C PF13263.1 gi|257388996|ref|YP_003178769.1| - 1.3e-13 50.2 0.2 2.4e-13 49.3 0.1 1.5 1 0 0 1 1 1 1 PHP-associated DUF457 PF04307.9 gi|257388997|ref|YP_003178770.1| - 1.8e-18 66.3 3.4 2.4e-18 65.9 2.3 1.1 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) Zn_dep_PLPC PF00882.13 gi|257388997|ref|YP_003178770.1| - 3.4e-05 23.5 0.1 4.9e-05 23.0 0.0 1.2 1 0 0 1 1 1 1 Zinc dependent phospholipase C CinA PF02464.12 gi|257388998|ref|YP_003178771.1| - 1.8e-56 189.8 0.6 2e-56 189.7 0.4 1.0 1 0 0 1 1 1 1 Competence-damaged protein YkuD PF03734.9 gi|257388998|ref|YP_003178771.1| - 0.14 12.4 0.1 0.19 11.9 0.1 1.2 1 0 0 1 1 1 0 L,D-transpeptidase catalytic domain ExoD PF06055.7 gi|257389000|ref|YP_003178773.1| - 0.04 13.0 0.5 0.043 12.9 0.4 1.0 1 0 0 1 1 1 0 Exopolysaccharide synthesis, ExoD SdpI PF13630.1 gi|257389000|ref|YP_003178773.1| - 0.045 13.4 3.0 0.055 13.1 2.1 1.1 1 0 0 1 1 1 0 SdpI/YhfL protein family PGPGW PF09656.5 gi|257389000|ref|YP_003178773.1| - 0.34 10.2 9.3 0.39 10.0 0.2 2.1 2 0 0 2 2 2 0 Putative transmembrane protein (PGPGW) DUF308 PF03729.8 gi|257389000|ref|YP_003178773.1| - 0.93 9.5 9.2 3.9 7.5 6.4 1.8 1 1 0 1 1 1 0 Short repeat of unknown function (DUF308) Neurensin PF14927.1 gi|257389000|ref|YP_003178773.1| - 4.7 6.5 11.6 1.3 8.4 1.6 2.0 1 1 1 2 2 2 0 Neurensin DUF3040 PF11239.3 gi|257389000|ref|YP_003178773.1| - 7.6 6.6 6.8 81 3.3 4.8 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF3040) Aminotran_1_2 PF00155.16 gi|257389001|ref|YP_003178774.1| - 1e-48 166.1 0.0 1.2e-48 165.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.14 gi|257389001|ref|YP_003178774.1| - 1.6e-08 33.7 0.0 2.5e-08 33.0 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Beta_elim_lyase PF01212.16 gi|257389001|ref|YP_003178774.1| - 0.00075 18.7 0.0 0.0011 18.1 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.15 gi|257389001|ref|YP_003178774.1| - 0.0057 14.9 0.0 0.0073 14.6 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Peptidase_M24 PF00557.19 gi|257389002|ref|YP_003178775.1| - 9.3e-35 120.0 2.0 1.2e-34 119.6 1.4 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.13 gi|257389002|ref|YP_003178775.1| - 9.3e-13 48.8 0.0 3.1e-12 47.1 0.0 1.9 2 0 0 2 2 2 1 Creatinase/Prolidase N-terminal domain NTP_transf_3 PF12804.2 gi|257389003|ref|YP_003178776.1| - 1.8e-33 115.8 5.7 2.3e-33 115.5 4.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.14 gi|257389003|ref|YP_003178776.1| - 0.0048 16.5 0.0 0.0099 15.5 0.0 1.8 1 1 0 1 1 1 1 Cytidylyltransferase Rhomboid PF01694.17 gi|257389004|ref|YP_003178777.1| - 1.7e-20 73.5 15.2 1.7e-20 73.5 10.6 1.6 2 0 0 2 2 2 1 Rhomboid family zf-AN1 PF01428.11 gi|257389004|ref|YP_003178777.1| - 2.1e-13 49.8 6.2 3e-13 49.3 4.3 1.2 1 0 0 1 1 1 1 AN1-like Zinc finger DUF1751 PF08551.5 gi|257389004|ref|YP_003178777.1| - 0.0099 16.1 0.7 0.0099 16.1 0.5 1.8 1 1 1 2 2 2 1 Eukaryotic integral membrane protein (DUF1751) C1_3 PF07649.7 gi|257389004|ref|YP_003178777.1| - 0.06 13.3 3.4 0.1 12.6 2.3 1.3 1 0 0 1 1 1 0 C1-like domain zf-HIT PF04438.11 gi|257389004|ref|YP_003178777.1| - 0.098 12.3 6.5 0.14 11.8 4.5 1.2 1 0 0 1 1 1 0 HIT zinc finger DUF4187 PF13821.1 gi|257389004|ref|YP_003178777.1| - 0.17 11.5 2.3 0.29 10.7 1.6 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4187) Endonuclease_5 PF04493.9 gi|257389005|ref|YP_003178778.1| - 3.2e-43 147.5 0.0 4.2e-43 147.0 0.0 1.2 1 0 0 1 1 1 1 Endonuclease V DUF624 PF04854.9 gi|257389006|ref|YP_003178779.1| - 0.24 11.2 2.1 0.66 9.8 1.4 1.7 1 1 0 1 1 1 0 Protein of unknown function, DUF624 adh_short PF00106.20 gi|257389007|ref|YP_003178780.1| - 6.5e-33 114.0 2.5 6.5e-33 114.0 1.7 1.5 2 0 0 2 2 2 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|257389007|ref|YP_003178780.1| - 5.1e-19 68.9 0.0 6.9e-19 68.5 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|257389007|ref|YP_003178780.1| - 1.8e-13 50.5 1.1 4.1e-13 49.3 0.7 1.5 1 1 0 1 1 1 1 KR domain NAD_binding_10 PF13460.1 gi|257389007|ref|YP_003178780.1| - 7.8e-06 26.0 3.8 1.3e-05 25.2 2.6 1.4 1 1 0 1 1 1 1 NADH(P)-binding Epimerase PF01370.16 gi|257389007|ref|YP_003178780.1| - 2.5e-05 23.8 0.1 6.7e-05 22.4 0.1 1.8 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|257389007|ref|YP_003178780.1| - 0.00052 19.0 1.1 0.00093 18.1 0.2 1.7 2 0 0 2 2 2 1 RmlD substrate binding domain DUF1776 PF08643.5 gi|257389007|ref|YP_003178780.1| - 0.0011 18.1 0.0 0.0021 17.2 0.0 1.4 1 1 0 1 1 1 1 Fungal family of unknown function (DUF1776) Eno-Rase_NADH_b PF12242.3 gi|257389007|ref|YP_003178780.1| - 0.0039 16.9 0.0 0.009 15.7 0.0 1.6 1 0 0 1 1 1 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase NmrA PF05368.8 gi|257389007|ref|YP_003178780.1| - 0.0071 15.6 0.2 0.011 14.9 0.1 1.2 1 0 0 1 1 1 1 NmrA-like family DUF4066 PF13278.1 gi|257389008|ref|YP_003178781.1| - 3.5e-37 127.2 1.7 4.1e-37 127.0 1.2 1.0 1 0 0 1 1 1 1 Putative amidotransferase DJ-1_PfpI PF01965.19 gi|257389008|ref|YP_003178781.1| - 4.6e-16 58.6 1.5 7.5e-16 57.9 1.1 1.3 1 0 0 1 1 1 1 DJ-1/PfpI family ArsA_ATPase PF02374.10 gi|257389009|ref|YP_003178782.1| - 5.2e-79 265.4 0.0 1.1e-78 264.3 0.0 1.5 1 1 0 1 1 1 1 Anion-transporting ATPase CbiA PF01656.18 gi|257389009|ref|YP_003178782.1| - 2.9e-11 43.1 0.1 2e-10 40.4 0.0 2.1 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|257389009|ref|YP_003178782.1| - 3.3e-05 23.8 0.6 0.0018 18.2 0.0 2.6 3 0 0 3 3 3 1 AAA domain AAA_25 PF13481.1 gi|257389009|ref|YP_003178782.1| - 0.0026 17.2 1.5 0.049 13.0 0.1 2.4 2 0 0 2 2 2 1 AAA domain SRP54 PF00448.17 gi|257389009|ref|YP_003178782.1| - 0.0059 16.0 0.0 0.25 10.7 0.1 2.2 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain Fer4_NifH PF00142.13 gi|257389009|ref|YP_003178782.1| - 0.014 14.5 0.1 0.022 13.9 0.0 1.2 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family PhoH PF02562.11 gi|257389009|ref|YP_003178782.1| - 0.015 14.5 0.0 0.033 13.4 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein IstB_IS21 PF01695.12 gi|257389009|ref|YP_003178782.1| - 0.071 12.5 0.0 0.12 11.7 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_10 PF12846.2 gi|257389009|ref|YP_003178782.1| - 0.18 11.2 0.6 0.4 10.0 0.4 1.6 1 1 0 1 1 1 0 AAA-like domain THOC7 PF05615.8 gi|257389009|ref|YP_003178782.1| - 0.28 11.4 2.5 0.78 9.9 0.5 2.1 2 0 0 2 2 2 0 Tho complex subunit 7 zf-ribbon_3 PF13248.1 gi|257389010|ref|YP_003178783.1| - 0.0016 17.6 0.9 0.62 9.3 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.2 gi|257389010|ref|YP_003178783.1| - 0.013 15.2 1.4 0.076 12.8 1.0 1.8 1 1 0 1 1 1 0 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|257389010|ref|YP_003178783.1| - 0.027 13.9 2.0 3.1 7.3 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Prok-RING_1 PF14446.1 gi|257389010|ref|YP_003178783.1| - 0.054 13.2 0.7 1.3 8.7 0.1 2.0 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 Cas_CXXC_CXXC PF09706.5 gi|257389010|ref|YP_003178783.1| - 0.077 13.1 1.0 0.49 10.5 0.0 2.0 1 1 1 2 2 2 0 CRISPR-associated protein (Cas_CXXC_CXXC) zf-C2HC5 PF06221.8 gi|257389010|ref|YP_003178783.1| - 0.098 12.4 0.5 0.56 10.0 0.3 1.9 1 1 0 1 1 1 0 Putative zinc finger motif, C2HC5-type TF_Zn_Ribbon PF08271.7 gi|257389010|ref|YP_003178783.1| - 0.13 11.5 1.0 9.2 5.6 0.1 2.1 2 0 0 2 2 2 0 TFIIB zinc-binding zf-CHCC PF10276.4 gi|257389010|ref|YP_003178783.1| - 0.21 11.4 1.5 0.26 11.1 0.1 1.8 2 0 0 2 2 2 0 Zinc-finger domain RecR PF02132.10 gi|257389010|ref|YP_003178783.1| - 0.52 9.7 4.1 2.3 7.7 2.9 1.9 1 1 0 1 1 1 0 RecR protein Zn-ribbon_8 PF09723.5 gi|257389010|ref|YP_003178783.1| - 0.69 9.9 4.0 4.7 7.2 2.8 2.0 1 1 0 1 1 1 0 Zinc ribbon domain zf-RING_3 PF14369.1 gi|257389010|ref|YP_003178783.1| - 3.1 7.8 5.5 28 4.8 3.7 2.1 1 1 0 1 1 1 0 zinc-finger zf-HYPF PF07503.7 gi|257389010|ref|YP_003178783.1| - 3.5 7.1 6.8 2.4 7.6 0.4 2.6 2 1 1 3 3 3 0 HypF finger Zn_Tnp_IS1595 PF12760.2 gi|257389010|ref|YP_003178783.1| - 4.2 7.2 5.5 2.6 7.8 0.4 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain Thioredoxin_4 PF13462.1 gi|257389011|ref|YP_003178784.1| - 4.6e-17 62.4 0.0 6.3e-17 62.0 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.1 gi|257389011|ref|YP_003178784.1| - 2.8e-11 43.5 0.0 9.6e-11 41.8 0.0 1.8 1 1 0 1 1 1 1 Thioredoxin-like domain DSBA PF01323.15 gi|257389011|ref|YP_003178784.1| - 4.5e-08 32.8 0.5 4.5e-08 32.8 0.4 1.4 2 0 0 2 2 2 1 DSBA-like thioredoxin domain Thioredoxin PF00085.15 gi|257389011|ref|YP_003178784.1| - 0.0028 17.2 0.0 0.15 11.7 0.0 2.3 2 0 0 2 2 2 1 Thioredoxin tRNA_anti-codon PF01336.20 gi|257389011|ref|YP_003178784.1| - 0.08 12.8 0.0 1.4 8.8 0.0 2.1 2 0 0 2 2 2 0 OB-fold nucleic acid binding domain Thioredoxin_5 PF13743.1 gi|257389011|ref|YP_003178784.1| - 0.21 11.1 0.6 0.59 9.6 0.0 1.8 2 0 0 2 2 2 0 Thioredoxin DUF1375 PF07119.7 gi|257389012|ref|YP_003178785.1| - 0.021 14.6 0.2 0.021 14.6 0.1 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF1375) Gly-zipper_OmpA PF13436.1 gi|257389013|ref|YP_003178786.1| - 0.12 11.9 0.7 0.18 11.4 0.5 1.2 1 0 0 1 1 1 0 Glycine-zipper containing OmpA-like membrane domain DUF2029 PF09594.5 gi|257389013|ref|YP_003178786.1| - 0.36 10.2 14.9 0.5 9.8 1.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2029) Gly-zipper_YMGG PF13441.1 gi|257389013|ref|YP_003178786.1| - 0.82 9.2 6.4 1.4 8.4 4.4 1.4 1 0 0 1 1 1 0 YMGG-like Gly-zipper Gly-zipper_Omp PF13488.1 gi|257389013|ref|YP_003178786.1| - 1.6 8.4 5.6 2.7 7.7 3.9 1.3 1 0 0 1 1 1 0 Glycine zipper Helicase_C_2 PF13307.1 gi|257389014|ref|YP_003178787.1| - 4.4e-24 85.3 0.0 8.3e-24 84.4 0.0 1.4 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.10 gi|257389014|ref|YP_003178787.1| - 4.2e-16 58.8 0.0 2.5e-12 46.5 0.0 2.1 2 0 0 2 2 2 2 DEAD_2 DEAD PF00270.24 gi|257389014|ref|YP_003178787.1| - 3.5e-10 39.6 0.1 0.00013 21.4 0.0 2.5 2 0 0 2 2 2 2 DEAD/DEAH box helicase PhoH PF02562.11 gi|257389014|ref|YP_003178787.1| - 2.4e-07 30.1 1.1 7.7e-06 25.2 0.1 2.2 2 0 0 2 2 2 1 PhoH-like protein ResIII PF04851.10 gi|257389014|ref|YP_003178787.1| - 1e-06 28.6 0.0 0.00079 19.2 0.0 2.2 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit AAA_19 PF13245.1 gi|257389014|ref|YP_003178787.1| - 1.4e-05 24.7 0.5 0.0001 21.9 0.1 2.6 2 1 0 2 2 2 1 Part of AAA domain AAA_30 PF13604.1 gi|257389014|ref|YP_003178787.1| - 0.00096 18.7 2.2 0.024 14.2 0.1 2.6 2 1 0 2 2 2 1 AAA domain DUF2075 PF09848.4 gi|257389014|ref|YP_003178787.1| - 0.011 14.7 1.7 0.28 10.1 0.5 2.1 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) AAA_22 PF13401.1 gi|257389014|ref|YP_003178787.1| - 0.015 15.4 5.3 21 5.2 0.2 3.4 2 1 1 3 3 3 0 AAA domain SNF2_N PF00176.18 gi|257389014|ref|YP_003178787.1| - 0.062 12.0 0.0 0.13 10.9 0.0 1.5 1 0 0 1 1 1 0 SNF2 family N-terminal domain DUF1253 PF06862.7 gi|257389014|ref|YP_003178787.1| - 0.29 9.4 0.0 0.48 8.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1253) PAS_9 PF13426.1 gi|257389015|ref|YP_003178788.1| - 2.9e-40 136.8 0.0 1.2e-17 64.2 0.0 3.4 3 0 0 3 3 3 3 PAS domain PAS_4 PF08448.5 gi|257389015|ref|YP_003178788.1| - 2.4e-33 114.4 9.2 5e-14 52.2 0.0 3.9 4 0 0 4 4 4 3 PAS fold PAS PF00989.19 gi|257389015|ref|YP_003178788.1| - 2.1e-28 98.3 0.1 2.6e-14 52.9 0.0 2.7 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.1 gi|257389015|ref|YP_003178788.1| - 2.2e-15 55.8 0.0 3.5e-06 26.6 0.0 2.9 2 0 0 2 2 2 2 PAS domain HATPase_c PF02518.21 gi|257389015|ref|YP_003178788.1| - 4.7e-14 52.0 0.0 1.2e-13 50.7 0.0 1.7 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|257389015|ref|YP_003178788.1| - 1.5e-08 34.4 1.1 4.1e-08 33.0 0.1 2.3 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain PAS_7 PF12860.2 gi|257389015|ref|YP_003178788.1| - 1.7e-06 27.9 4.8 0.0017 18.3 0.1 3.8 4 1 0 4 4 4 2 PAS fold PAS_10 PF13596.1 gi|257389015|ref|YP_003178788.1| - 5.6e-06 26.5 0.0 0.021 15.0 0.0 2.7 2 0 0 2 2 2 2 PAS domain PAS_3 PF08447.6 gi|257389015|ref|YP_003178788.1| - 0.0021 18.1 0.0 0.15 12.1 0.0 3.2 3 0 0 3 3 3 1 PAS fold HisKA PF00512.20 gi|257389015|ref|YP_003178788.1| - 0.0052 16.7 0.3 0.03 14.3 0.2 2.5 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.1 gi|257389015|ref|YP_003178788.1| - 0.01 15.5 0.0 0.02 14.6 0.0 1.5 1 0 0 1 1 1 0 GHKL domain DHHA1 PF02272.14 gi|257389015|ref|YP_003178788.1| - 0.056 13.1 0.1 1.1 9.0 0.0 3.0 3 0 0 3 3 3 0 DHHA1 domain CTP_transf_3 PF02348.14 gi|257389015|ref|YP_003178788.1| - 0.4 10.2 1.7 0.51 9.9 0.1 1.9 2 0 0 2 2 2 0 Cytidylyltransferase NHL PF01436.16 gi|257389016|ref|YP_003178789.1| - 3.7e-19 67.6 20.4 4.9e-06 26.2 0.1 9.6 10 1 0 10 10 10 4 NHL repeat SGL PF08450.7 gi|257389016|ref|YP_003178789.1| - 9.9e-05 21.8 2.6 1.4 8.2 0.0 5.9 5 2 1 7 7 7 1 SMP-30/Gluconolaconase/LRE-like region SBBP PF06739.6 gi|257389016|ref|YP_003178789.1| - 0.0084 15.8 0.0 0.22 11.3 0.0 3.0 2 0 0 2 2 2 1 Beta-propeller repeat Ldl_recept_b PF00058.12 gi|257389016|ref|YP_003178789.1| - 0.011 16.0 0.2 4.1 7.7 0.0 3.8 3 0 0 3 3 3 0 Low-density lipoprotein receptor repeat class B DUF4237 PF14021.1 gi|257389016|ref|YP_003178789.1| - 0.031 14.5 0.6 0.21 11.8 0.1 2.7 3 1 1 4 4 4 0 Protein of unknown function (DUF4237) Reg_prop PF07494.6 gi|257389016|ref|YP_003178789.1| - 0.034 14.1 0.1 0.92 9.7 0.0 3.3 2 0 0 2 2 2 0 Two component regulator propeller Pertactin PF03212.9 gi|257389016|ref|YP_003178789.1| - 0.12 12.0 0.0 0.31 10.7 0.0 1.6 1 0 0 1 1 1 0 Pertactin MASE1 PF05231.9 gi|257389017|ref|YP_003178790.1| - 0.058 12.3 9.0 0.06 12.3 6.2 1.0 1 0 0 1 1 1 0 MASE1 CoA_transf_3 PF02515.12 gi|257389018|ref|YP_003178791.1| - 1.2e-63 213.7 0.0 1.8e-63 213.2 0.0 1.2 1 0 0 1 1 1 1 CoA-transferase family III B12-binding PF02310.14 gi|257389019|ref|YP_003178792.1| - 2.5e-17 62.8 0.5 3.2e-17 62.5 0.3 1.2 1 0 0 1 1 1 1 B12 binding domain Glyco_transf_28 PF03033.15 gi|257389019|ref|YP_003178792.1| - 0.0026 17.5 0.7 0.016 14.9 0.5 2.0 1 1 0 1 1 1 1 Glycosyltransferase family 28 N-terminal domain Peripla_BP_6 PF13458.1 gi|257389019|ref|YP_003178792.1| - 0.0042 16.4 0.6 0.12 11.7 0.1 2.1 1 1 1 2 2 2 2 Periplasmic binding protein ADH_zinc_N PF00107.21 gi|257389019|ref|YP_003178792.1| - 0.005 16.3 0.0 0.051 13.1 0.0 2.0 2 0 0 2 2 2 1 Zinc-binding dehydrogenase DUF3662 PF12401.3 gi|257389019|ref|YP_003178792.1| - 0.0093 16.1 1.1 0.0093 16.1 0.8 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF2662) SNAPc_SNAP43 PF09808.4 gi|257389019|ref|YP_003178792.1| - 0.025 14.2 0.0 0.031 13.9 0.0 1.2 1 0 0 1 1 1 0 Small nuclear RNA activating complex (SNAPc), subunit SNAP43 UPF0180 PF03698.8 gi|257389019|ref|YP_003178792.1| - 0.085 12.7 0.0 0.17 11.7 0.0 1.6 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0180) Met_asp_mut_E PF06368.6 gi|257389020|ref|YP_003178793.1| - 5.3e-179 595.0 0.0 6e-179 594.8 0.0 1.0 1 0 0 1 1 1 1 Methylaspartate mutase E chain (MutE) MAAL_C PF07476.6 gi|257389021|ref|YP_003178794.1| - 2.4e-110 367.3 0.0 3e-110 367.0 0.0 1.1 1 0 0 1 1 1 1 Methylaspartate ammonia-lyase C-terminus MAAL_N PF05034.8 gi|257389021|ref|YP_003178794.1| - 5.6e-62 208.2 1.1 9.1e-62 207.5 0.1 1.8 2 0 0 2 2 2 1 Methylaspartate ammonia-lyase N-terminus MR_MLE_C PF13378.1 gi|257389021|ref|YP_003178794.1| - 7.3e-11 42.0 0.4 3.1e-10 39.9 0.1 2.4 3 0 0 3 3 3 1 Enolase C-terminal domain-like MaoC_dehydratas PF01575.14 gi|257389022|ref|YP_003178795.1| - 2.4e-07 30.1 0.0 1.2e-06 27.9 0.0 1.9 2 0 0 2 2 2 1 MaoC like domain MaoC_dehydrat_N PF13452.1 gi|257389022|ref|YP_003178795.1| - 0.00016 21.4 0.0 0.00042 20.0 0.0 1.7 1 0 0 1 1 1 1 N-terminal half of MaoC dehydratase 4HBT_2 PF13279.1 gi|257389022|ref|YP_003178795.1| - 0.021 15.2 0.0 0.15 12.4 0.0 2.1 2 0 0 2 2 2 0 Thioesterase-like superfamily HpcH_HpaI PF03328.9 gi|257389023|ref|YP_003178796.1| - 1.7e-17 63.0 0.1 2.4e-16 59.2 0.0 2.6 2 1 0 2 2 2 1 HpcH/HpaI aldolase/citrate lyase family C-C_Bond_Lyase PF15617.1 gi|257389023|ref|YP_003178796.1| - 0.00071 18.4 0.0 0.089 11.5 0.0 2.1 2 0 0 2 2 2 2 C-C_Bond_Lyase of the TIM-Barrel fold Malate_synthase PF01274.17 gi|257389023|ref|YP_003178796.1| - 0.048 11.6 0.0 5 5.0 0.0 2.7 2 1 1 3 3 3 0 Malate synthase DUF2096 PF09869.4 gi|257389024|ref|YP_003178797.1| - 0.024 14.5 0.6 0.044 13.6 0.4 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2096) DNA_pol_B_thumb PF14791.1 gi|257389025|ref|YP_003178798.1| - 1e-22 79.5 0.0 3e-22 78.0 0.0 1.9 1 0 0 1 1 1 1 DNA polymerase beta thumb HHH_5 PF14520.1 gi|257389025|ref|YP_003178798.1| - 2.4e-19 69.2 7.5 5e-11 42.6 0.4 3.8 3 0 0 3 3 3 2 Helix-hairpin-helix domain HHH_8 PF14716.1 gi|257389025|ref|YP_003178798.1| - 1.7e-18 66.5 2.0 3.5e-16 59.1 0.1 3.4 3 0 0 3 3 3 1 Helix-hairpin-helix domain PHP PF02811.14 gi|257389025|ref|YP_003178798.1| - 1.3e-12 47.8 0.0 5.1e-12 45.9 0.0 2.0 1 1 0 1 1 1 1 PHP domain HHH_2 PF12826.2 gi|257389025|ref|YP_003178798.1| - 1.4e-07 31.2 4.9 0.0031 17.3 0.0 3.2 4 0 0 4 4 4 2 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.4 gi|257389025|ref|YP_003178798.1| - 5.1e-06 25.9 0.1 1.8e-05 24.1 0.0 2.0 2 0 0 2 2 2 1 Fingers domain of DNA polymerase lambda DNA_pol_B_palm PF14792.1 gi|257389025|ref|YP_003178798.1| - 0.00044 20.2 0.0 0.00098 19.1 0.0 1.6 1 0 0 1 1 1 1 DNA polymerase beta palm HHH PF00633.18 gi|257389025|ref|YP_003178798.1| - 0.00078 19.0 2.7 0.012 15.2 0.1 3.3 2 1 0 2 2 2 1 Helix-hairpin-helix motif Ribosomal_S13 PF00416.17 gi|257389025|ref|YP_003178798.1| - 0.13 12.7 0.1 14 6.1 0.0 3.1 1 1 2 3 3 3 0 Ribosomal protein S13/S18 Mut7-C PF01927.11 gi|257389026|ref|YP_003178799.1| - 2.2e-38 131.4 0.0 2.5e-38 131.3 0.0 1.0 1 0 0 1 1 1 1 Mut7-C RNAse domain PQQ_3 PF13570.1 gi|257389026|ref|YP_003178799.1| - 0.056 13.7 0.8 0.12 12.7 0.0 1.9 2 0 0 2 2 2 0 PQQ-like domain DZR PF12773.2 gi|257389026|ref|YP_003178799.1| - 0.096 12.5 0.2 0.23 11.2 0.1 1.6 1 0 0 1 1 1 0 Double zinc ribbon LexA_DNA_bind PF01726.11 gi|257389027|ref|YP_003178800.1| - 0.0012 18.4 0.0 0.0015 18.0 0.0 1.2 1 0 0 1 1 1 1 LexA DNA binding domain HTH_24 PF13412.1 gi|257389027|ref|YP_003178800.1| - 0.02 14.2 0.4 0.71 9.3 0.1 2.7 3 0 0 3 3 3 0 Winged helix-turn-helix DNA-binding HTH_6 PF01418.12 gi|257389027|ref|YP_003178800.1| - 0.034 13.8 0.0 0.047 13.4 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family DUF3263 PF11662.3 gi|257389027|ref|YP_003178800.1| - 0.09 12.2 0.0 0.11 11.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3263) RepL PF05732.6 gi|257389027|ref|YP_003178800.1| - 0.13 11.4 0.0 0.15 11.2 0.0 1.1 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) HTH_20 PF12840.2 gi|257389028|ref|YP_003178801.1| - 9.3e-09 34.9 0.1 2.4e-05 24.0 0.0 2.6 2 0 0 2 2 2 2 Helix-turn-helix domain MarR_2 PF12802.2 gi|257389028|ref|YP_003178801.1| - 3.4e-06 26.6 0.1 1.6e-05 24.4 0.1 2.1 2 0 0 2 2 2 1 MarR family HTH_34 PF13601.1 gi|257389028|ref|YP_003178801.1| - 2.7e-05 24.1 0.0 0.12 12.4 0.0 2.3 2 0 0 2 2 2 2 Winged helix DNA-binding domain HTH_5 PF01022.15 gi|257389028|ref|YP_003178801.1| - 3.3e-05 23.4 0.0 0.0046 16.5 0.0 2.4 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.1 gi|257389028|ref|YP_003178801.1| - 3.3e-05 23.1 0.0 0.00033 19.9 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|257389028|ref|YP_003178801.1| - 0.00017 21.2 0.0 0.00092 18.8 0.0 2.0 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|257389028|ref|YP_003178801.1| - 0.00033 20.2 0.0 0.00065 19.2 0.0 1.4 1 0 0 1 1 1 1 HTH domain MarR PF01047.17 gi|257389028|ref|YP_003178801.1| - 0.00042 19.9 0.0 0.0046 16.6 0.0 2.3 2 0 0 2 2 2 1 MarR family HTH_IclR PF09339.5 gi|257389028|ref|YP_003178801.1| - 0.0008 18.9 1.0 0.0019 17.7 0.2 2.1 2 1 0 2 2 2 1 IclR helix-turn-helix domain HTH_Crp_2 PF13545.1 gi|257389028|ref|YP_003178801.1| - 0.0042 16.8 0.0 0.032 13.9 0.0 2.4 3 0 0 3 3 3 1 Crp-like helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|257389028|ref|YP_003178801.1| - 0.0055 16.2 0.4 0.041 13.4 0.0 2.3 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain Fe_dep_repress PF01325.14 gi|257389028|ref|YP_003178801.1| - 0.0066 16.3 0.0 0.017 15.0 0.0 1.7 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain GntR PF00392.16 gi|257389028|ref|YP_003178801.1| - 0.0079 15.6 0.0 0.02 14.3 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family DUF2250 PF10007.4 gi|257389028|ref|YP_003178801.1| - 0.049 13.5 0.0 0.41 10.5 0.0 2.1 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) HTH_23 PF13384.1 gi|257389028|ref|YP_003178801.1| - 0.05 13.2 0.0 0.14 11.8 0.0 1.8 2 0 0 2 2 2 0 Homeodomain-like domain HTH_36 PF13730.1 gi|257389028|ref|YP_003178801.1| - 0.066 13.3 0.0 0.19 11.8 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain LRV PF01816.12 gi|257389028|ref|YP_003178801.1| - 0.22 11.7 0.6 0.22 11.7 0.4 3.5 4 0 0 4 4 2 0 Leucine rich repeat variant Band_7 PF01145.20 gi|257389029|ref|YP_003178802.1| - 3.9e-39 134.4 2.3 3.9e-39 134.4 1.6 1.7 2 0 0 2 2 2 1 SPFH domain / Band 7 family Band_7_1 PF13421.1 gi|257389029|ref|YP_003178802.1| - 0.0014 18.2 0.1 0.0023 17.4 0.0 1.4 1 0 0 1 1 1 1 SPFH domain-Band 7 family DUF719 PF05334.8 gi|257389029|ref|YP_003178802.1| - 0.0053 16.8 2.1 3 7.8 0.0 2.7 2 0 0 2 2 2 2 Protein of unknown function (DUF719) NfeD PF01957.13 gi|257389030|ref|YP_003178803.1| - 8.4e-15 55.1 3.7 1.1e-14 54.8 2.6 1.1 1 0 0 1 1 1 1 NfeD-like C-terminal, partner-binding DUF308 PF03729.8 gi|257389030|ref|YP_003178803.1| - 0.31 11.0 11.8 0.062 13.3 4.4 2.0 2 0 0 2 2 2 0 Short repeat of unknown function (DUF308) DUF2759 PF10958.3 gi|257389031|ref|YP_003178804.1| - 3.3 7.3 10.4 2.8 7.5 4.8 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2759) DUF2273 PF10031.4 gi|257389031|ref|YP_003178804.1| - 9.4 5.9 12.6 0.73 9.4 2.7 2.2 2 0 0 2 2 2 0 Small integral membrane protein (DUF2273) tRNA-synt_1g PF09334.6 gi|257389032|ref|YP_003178805.1| - 7.9e-129 429.7 0.1 6.6e-128 426.6 0.0 1.9 1 1 0 1 1 1 1 tRNA synthetases class I (M) tRNA_bind PF01588.15 gi|257389032|ref|YP_003178805.1| - 3.5e-19 68.4 0.0 5.7e-19 67.7 0.0 1.3 1 0 0 1 1 1 1 Putative tRNA binding domain tRNA-synt_1 PF00133.17 gi|257389032|ref|YP_003178805.1| - 2.2e-11 42.4 1.5 4e-06 25.1 0.5 2.9 2 1 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.8 gi|257389032|ref|YP_003178805.1| - 1.7e-08 34.3 0.0 2.8e-08 33.6 0.0 1.3 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.14 gi|257389032|ref|YP_003178805.1| - 2.7e-06 26.7 0.0 0.00035 19.8 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.13 gi|257389032|ref|YP_003178805.1| - 0.048 12.3 0.0 0.13 10.9 0.0 1.7 2 0 0 2 2 2 0 tRNA synthetases class I (K) B PF02216.11 gi|257389032|ref|YP_003178805.1| - 0.14 11.9 0.3 0.36 10.6 0.0 1.8 2 0 0 2 2 2 0 B domain SNARE_assoc PF09335.6 gi|257389033|ref|YP_003178806.1| - 2.5e-11 43.8 1.4 2.5e-11 43.8 1.0 1.9 1 1 1 2 2 2 2 SNARE associated Golgi protein Pyridoxal_deC PF00282.14 gi|257389034|ref|YP_003178807.1| - 2.1e-23 82.4 0.0 2.6e-23 82.0 0.0 1.2 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.14 gi|257389034|ref|YP_003178807.1| - 5.6e-10 38.5 0.0 7.5e-10 38.0 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V SHMT PF00464.14 gi|257389034|ref|YP_003178807.1| - 0.1 10.9 0.0 0.26 9.6 0.0 1.6 1 1 0 1 1 1 0 Serine hydroxymethyltransferase HTH_8 PF02954.14 gi|257389034|ref|YP_003178807.1| - 0.14 11.7 0.0 0.37 10.3 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family DUF749 PF05370.6 gi|257389034|ref|YP_003178807.1| - 0.2 11.5 0.0 0.35 10.8 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF749) KaiC PF06745.8 gi|257389035|ref|YP_003178808.1| - 3.6e-06 26.2 0.0 0.002 17.2 0.0 2.2 2 0 0 2 2 2 2 KaiC AAA_25 PF13481.1 gi|257389035|ref|YP_003178808.1| - 0.0037 16.6 2.1 0.013 14.8 1.5 1.9 1 1 0 1 1 1 1 AAA domain DUF835 PF05763.7 gi|257389035|ref|YP_003178808.1| - 0.0092 15.5 0.0 0.015 14.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF835) PPDK_N PF01326.14 gi|257389036|ref|YP_003178809.1| - 4.2e-104 348.1 6.2 6.8e-104 347.4 4.3 1.2 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.13 gi|257389036|ref|YP_003178809.1| - 1.2e-77 260.7 0.0 1.7e-77 260.2 0.0 1.2 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.18 gi|257389036|ref|YP_003178809.1| - 2.2e-28 97.6 2.6 4e-28 96.7 1.1 2.0 2 0 0 2 2 2 1 PEP-utilising enzyme, mobile domain PhzC-PhzF PF02567.11 gi|257389037|ref|YP_003178810.1| - 3.3e-66 223.3 0.2 3.7e-66 223.2 0.1 1.0 1 0 0 1 1 1 1 Phenazine biosynthesis-like protein DAP_epimerase PF01678.14 gi|257389037|ref|YP_003178810.1| - 1.8e-06 27.8 0.2 0.00051 19.9 0.0 2.4 2 0 0 2 2 2 2 Diaminopimelate epimerase Flagellin_D3 PF08884.6 gi|257389037|ref|YP_003178810.1| - 0.0015 18.6 0.6 0.065 13.4 0.2 2.3 2 0 0 2 2 2 1 Flagellin D3 domain Pro_racemase PF05544.6 gi|257389037|ref|YP_003178810.1| - 0.024 13.4 0.0 0.035 12.9 0.0 1.2 1 0 0 1 1 1 0 Proline racemase Lactamase_B_5 PF14597.1 gi|257389037|ref|YP_003178810.1| - 0.036 13.4 0.1 0.13 11.6 0.0 1.8 2 0 0 2 2 2 0 Metallo-beta-lactamase superfamily Mem_trans PF03547.13 gi|257389038|ref|YP_003178811.1| - 4.1e-23 81.2 18.0 1.8e-13 49.5 5.2 2.1 1 1 1 2 2 2 2 Membrane transport protein NADH-u_ox-rdase PF10785.4 gi|257389038|ref|YP_003178811.1| - 0.41 10.9 3.9 0.34 11.1 0.2 2.8 2 1 0 2 2 2 0 NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit ScpA_ScpB PF02616.9 gi|257389040|ref|YP_003178813.1| - 1.6e-23 83.5 0.0 4.8e-23 81.9 0.0 1.7 1 1 0 1 1 1 1 ScpA/B protein SMC_N PF02463.14 gi|257389041|ref|YP_003178814.1| - 2.4e-54 183.9 38.2 1.3e-30 106.3 0.0 3.0 2 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain SMC_hinge PF06470.8 gi|257389041|ref|YP_003178814.1| - 5.2e-29 100.6 0.0 2.6e-28 98.3 0.0 2.3 2 0 0 2 2 1 1 SMC proteins Flexible Hinge Domain AAA_23 PF13476.1 gi|257389041|ref|YP_003178814.1| - 6.9e-17 62.4 11.3 6.9e-17 62.4 7.9 8.0 2 2 2 4 4 1 1 AAA domain AAA_21 PF13304.1 gi|257389041|ref|YP_003178814.1| - 2.5e-14 53.9 7.7 2.8e-07 30.7 0.2 3.6 3 2 0 3 3 2 2 AAA domain AAA_13 PF13166.1 gi|257389041|ref|YP_003178814.1| - 5.1e-12 45.0 111.0 0.00023 19.8 18.4 7.6 3 2 4 7 7 7 5 AAA domain IncA PF04156.9 gi|257389041|ref|YP_003178814.1| - 1.3e-10 41.2 155.0 5.9e-05 22.7 24.1 8.2 2 2 6 8 8 8 5 IncA protein Reo_sigmaC PF04582.7 gi|257389041|ref|YP_003178814.1| - 9.2e-09 34.9 29.4 0.062 12.4 0.4 5.9 2 2 3 6 6 6 5 Reovirus sigma C capsid protein ATG16 PF08614.6 gi|257389041|ref|YP_003178814.1| - 4.3e-07 29.9 131.6 0.0026 17.6 5.2 8.8 2 2 7 9 9 9 5 Autophagy protein 16 (ATG16) MscS_porin PF12795.2 gi|257389041|ref|YP_003178814.1| - 5.2e-07 29.2 119.2 0.00013 21.3 23.3 5.5 2 2 3 5 5 5 3 Mechanosensitive ion channel porin domain AAA_29 PF13555.1 gi|257389041|ref|YP_003178814.1| - 4.3e-06 26.1 0.0 1.3e-05 24.6 0.0 1.8 1 0 0 1 1 1 1 P-loop containing region of AAA domain TMF_DNA_bd PF12329.3 gi|257389041|ref|YP_003178814.1| - 2.1e-05 24.2 9.2 2.1e-05 24.2 6.4 12.3 3 3 8 12 12 11 4 TATA element modulatory factor 1 DNA binding AAA_15 PF13175.1 gi|257389041|ref|YP_003178814.1| - 9.4e-05 21.6 28.8 0.0014 17.7 13.2 3.8 2 2 0 2 2 2 2 AAA ATPase domain CENP-F_leu_zip PF10473.4 gi|257389041|ref|YP_003178814.1| - 0.00018 21.3 149.8 0.033 14.0 7.9 9.3 2 2 7 9 9 9 3 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 EzrA PF06160.7 gi|257389041|ref|YP_003178814.1| - 0.00061 18.0 107.1 0.0007 17.9 11.7 5.9 2 2 1 3 3 2 2 Septation ring formation regulator, EzrA DUF812 PF05667.6 gi|257389041|ref|YP_003178814.1| - 0.002 16.7 30.8 0.002 16.7 21.3 6.7 2 2 3 5 5 5 1 Protein of unknown function (DUF812) CASP_C PF08172.7 gi|257389041|ref|YP_003178814.1| - 0.0021 17.1 10.0 0.0021 17.1 6.9 8.1 4 2 2 8 8 7 2 CASP C terminal APG6 PF04111.7 gi|257389041|ref|YP_003178814.1| - 0.0049 15.9 145.8 0.11 11.5 14.1 7.6 2 2 8 10 10 10 7 Autophagy protein Apg6 DUF4200 PF13863.1 gi|257389041|ref|YP_003178814.1| - 0.014 15.3 155.4 0.16 11.9 13.4 9.3 3 2 6 9 9 9 0 Domain of unknown function (DUF4200) AAA_27 PF13514.1 gi|257389041|ref|YP_003178814.1| - 0.02 12.5 127.0 0.0096 13.6 37.9 2.7 2 1 0 2 2 2 0 AAA domain Filament PF00038.16 gi|257389041|ref|YP_003178814.1| - 0.038 13.4 135.7 0.11 12.0 14.5 6.8 2 2 3 5 5 4 0 Intermediate filament protein Fib_alpha PF08702.5 gi|257389041|ref|YP_003178814.1| - 0.079 13.0 68.5 0.043 13.9 3.4 6.9 3 2 3 7 7 6 0 Fibrinogen alpha/beta chain family TBPIP PF07106.8 gi|257389041|ref|YP_003178814.1| - 0.15 11.5 117.1 0.1 12.1 0.8 8.5 3 2 5 8 8 8 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Mnd1 PF03962.10 gi|257389041|ref|YP_003178814.1| - 0.28 10.8 120.9 0.31 10.6 12.7 8.4 2 2 4 7 7 6 0 Mnd1 family DUF3584 PF12128.3 gi|257389041|ref|YP_003178814.1| - 0.83 6.9 140.5 0.0034 14.8 4.2 4.4 2 2 2 4 4 4 0 Protein of unknown function (DUF3584) DUF1664 PF07889.7 gi|257389041|ref|YP_003178814.1| - 0.9 9.3 78.6 0.13 12.0 2.7 9.6 5 3 5 10 10 10 0 Protein of unknown function (DUF1664) Myosin_tail_1 PF01576.14 gi|257389041|ref|YP_003178814.1| - 0.93 7.1 166.7 0.032 11.9 32.5 4.2 2 2 1 3 3 3 0 Myosin tail ABC_tran PF00005.22 gi|257389041|ref|YP_003178814.1| - 1.4 9.2 0.0 1.4 9.2 0.0 6.4 3 2 0 3 3 1 0 ABC transporter Laminin_II PF06009.7 gi|257389041|ref|YP_003178814.1| - 3.9 7.2 79.4 0.15 11.7 3.9 9.1 3 2 6 10 10 10 0 Laminin Domain II WEMBL PF05701.6 gi|257389041|ref|YP_003178814.1| - 4 5.7 140.1 0.0031 16.0 42.3 4.5 2 1 3 5 5 4 0 Weak chloroplast movement under blue light Spc7 PF08317.6 gi|257389041|ref|YP_003178814.1| - 4.9 5.7 125.4 0.8 8.2 11.4 7.6 2 2 5 8 8 8 0 Spc7 kinetochore protein GAS PF13851.1 gi|257389041|ref|YP_003178814.1| - 5.2 6.2 120.2 0.0066 15.6 7.7 7.4 2 2 4 6 6 5 0 Growth-arrest specific micro-tubule binding ADIP PF11559.3 gi|257389041|ref|YP_003178814.1| - 5.3 6.9 112.0 0.018 14.9 3.2 9.5 3 2 6 10 10 10 0 Afadin- and alpha -actinin-Binding FlxA PF14282.1 gi|257389041|ref|YP_003178814.1| - 6.6 6.7 81.2 0.054 13.4 2.5 8.6 3 2 7 10 10 9 0 FlxA-like protein Baculo_PEP_C PF04513.7 gi|257389041|ref|YP_003178814.1| - 6.9 6.5 39.2 0.2 11.4 0.8 7.4 4 2 4 9 9 9 0 Baculovirus polyhedron envelope protein, PEP, C terminus Striatin PF08232.7 gi|257389042|ref|YP_003178815.1| - 0.0038 17.5 2.4 0.0047 17.2 1.6 1.1 1 0 0 1 1 1 1 Striatin family SlyX PF04102.7 gi|257389042|ref|YP_003178815.1| - 0.0042 17.4 0.1 0.0078 16.5 0.0 1.6 1 0 0 1 1 1 1 SlyX Tropomyosin PF00261.15 gi|257389042|ref|YP_003178815.1| - 0.0075 15.3 0.4 0.0075 15.3 0.3 1.7 2 0 0 2 2 2 1 Tropomyosin bZIP_1 PF00170.16 gi|257389042|ref|YP_003178815.1| - 0.026 14.4 0.5 0.042 13.7 0.3 1.4 1 0 0 1 1 1 0 bZIP transcription factor Med4 PF10018.4 gi|257389042|ref|YP_003178815.1| - 0.05 13.0 0.4 0.05 13.0 0.3 2.0 1 1 1 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 Phlebovirus_NSM PF07246.6 gi|257389042|ref|YP_003178815.1| - 0.053 12.6 0.0 0.086 11.9 0.0 1.3 1 0 0 1 1 1 0 Phlebovirus nonstructural protein NS-M Prefoldin_2 PF01920.15 gi|257389042|ref|YP_003178815.1| - 0.09 12.5 0.1 0.17 11.6 0.1 1.5 1 0 0 1 1 1 0 Prefoldin subunit FlaC_arch PF05377.6 gi|257389042|ref|YP_003178815.1| - 0.11 12.4 0.6 0.16 11.8 0.4 1.3 1 0 0 1 1 1 0 Flagella accessory protein C (FlaC) ATG16 PF08614.6 gi|257389042|ref|YP_003178815.1| - 0.64 9.8 4.4 0.23 11.2 0.4 1.8 2 0 0 2 2 2 0 Autophagy protein 16 (ATG16) Spc24 PF08286.6 gi|257389042|ref|YP_003178815.1| - 0.76 9.4 4.9 5.4 6.7 3.4 1.9 1 1 0 1 1 1 0 Spc24 subunit of Ndc80 Tropomyosin_1 PF12718.2 gi|257389042|ref|YP_003178815.1| - 0.77 9.5 7.7 0.066 13.0 1.2 1.8 1 1 0 1 1 1 0 Tropomyosin like Tmemb_18A PF09771.4 gi|257389043|ref|YP_003178816.1| - 0.01 15.7 0.0 0.016 15.1 0.0 1.2 1 0 0 1 1 1 0 Transmembrane protein 188 FHA PF00498.21 gi|257389043|ref|YP_003178816.1| - 0.018 15.1 0.0 0.044 13.9 0.0 1.6 2 0 0 2 2 2 0 FHA domain GatB_N PF02934.10 gi|257389044|ref|YP_003178817.1| - 3.2e-109 364.2 0.0 4.7e-109 363.7 0.0 1.1 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.13 gi|257389044|ref|YP_003178817.1| - 1.5e-40 138.3 0.0 2.9e-40 137.3 0.0 1.5 1 0 0 1 1 1 1 GatB domain Thymidylat_synt PF00303.14 gi|257389045|ref|YP_003178818.1| - 2.1e-95 318.8 0.0 2.4e-95 318.6 0.0 1.0 1 0 0 1 1 1 1 Thymidylate synthase DUF1470 PF07336.6 gi|257389045|ref|YP_003178818.1| - 0.012 15.9 0.5 0.012 15.9 0.3 2.9 2 1 1 3 3 3 0 Protein of unknown function (DUF1470) DHFR_1 PF00186.14 gi|257389046|ref|YP_003178819.1| - 3.6e-51 172.9 0.0 4.1e-51 172.7 0.0 1.0 1 0 0 1 1 1 1 Dihydrofolate reductase PrgI PF12666.2 gi|257389047|ref|YP_003178820.1| - 1.7 8.8 5.6 0.71 10.0 0.5 2.4 3 0 0 3 3 3 0 PrgI family protein Epimerase_2 PF02350.14 gi|257389048|ref|YP_003178821.1| - 5.4e-72 242.4 0.0 6.4e-72 242.2 0.0 1.0 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase Topoisom_bac PF01131.15 gi|257389049|ref|YP_003178822.1| - 5.6e-115 384.3 0.0 7.1e-115 384.0 0.0 1.1 1 0 0 1 1 1 1 DNA topoisomerase zf-C4_Topoisom PF01396.14 gi|257389049|ref|YP_003178822.1| - 1.3e-19 69.4 3.1 2.6e-14 52.4 0.9 4.1 5 0 0 5 5 5 2 Topoisomerase DNA binding C4 zinc finger Toprim PF01751.17 gi|257389049|ref|YP_003178822.1| - 4.1e-16 58.7 0.0 7.5e-16 57.9 0.0 1.5 1 0 0 1 1 1 1 Toprim domain HHH_5 PF14520.1 gi|257389049|ref|YP_003178822.1| - 6.1e-08 32.7 4.8 2.7e-07 30.6 1.1 3.5 4 1 0 4 4 4 1 Helix-hairpin-helix domain Cdd1 PF11731.3 gi|257389049|ref|YP_003178822.1| - 4e-05 23.4 0.0 0.00014 21.7 0.0 1.9 1 0 0 1 1 1 1 Pathogenicity locus HHH PF00633.18 gi|257389049|ref|YP_003178822.1| - 0.0047 16.5 0.0 0.018 14.7 0.0 2.1 1 0 0 1 1 1 1 Helix-hairpin-helix motif IMS_HHH PF11798.3 gi|257389049|ref|YP_003178822.1| - 0.033 14.2 0.0 0.086 12.9 0.0 1.7 1 0 0 1 1 1 0 IMS family HHH motif Germane PF10646.4 gi|257389049|ref|YP_003178822.1| - 0.076 13.1 0.0 0.31 11.2 0.0 2.0 2 0 0 2 2 2 0 Sporulation and spore germination TfoX_C PF04994.8 gi|257389049|ref|YP_003178822.1| - 0.086 12.7 0.0 0.17 11.7 0.0 1.4 1 0 0 1 1 1 0 TfoX C-terminal domain DZR PF12773.2 gi|257389049|ref|YP_003178822.1| - 0.76 9.6 6.4 1.8 8.4 0.9 2.8 3 0 0 3 3 3 0 Double zinc ribbon Lar_restr_allev PF14354.1 gi|257389049|ref|YP_003178822.1| - 4.7 7.5 14.6 28 5.1 3.9 3.5 2 1 1 3 3 3 0 Restriction alleviation protein Lar YcfA PF07927.7 gi|257389050|ref|YP_003178823.1| - 0.002 18.0 0.0 0.0052 16.6 0.0 1.7 1 0 0 1 1 1 1 YcfA-like protein I-set PF07679.11 gi|257389050|ref|YP_003178823.1| - 0.082 12.7 0.1 0.12 12.2 0.1 1.2 1 0 0 1 1 1 0 Immunoglobulin I-set domain UPF0118 PF01594.11 gi|257389051|ref|YP_003178824.1| - 1.9e-12 46.8 24.8 2.7e-12 46.3 17.2 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF20 DUF1268 PF06896.6 gi|257389052|ref|YP_003178825.1| - 0.018 15.3 0.1 0.018 15.3 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1268) McrBC PF10117.4 gi|257389053|ref|YP_003178826.1| - 0.13 11.1 0.5 0.27 10.1 0.1 1.7 2 0 0 2 2 2 0 McrBC 5-methylcytosine restriction system component AAA_5 PF07728.9 gi|257389054|ref|YP_003178827.1| - 1.7e-15 57.0 0.0 6.9e-15 54.9 0.0 2.1 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.1 gi|257389054|ref|YP_003178827.1| - 1.1e-06 28.8 0.0 3.1e-06 27.3 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.1 gi|257389054|ref|YP_003178827.1| - 7.2e-06 25.6 0.2 1.9e-05 24.3 0.2 1.6 1 0 0 1 1 1 1 Part of AAA domain AAA PF00004.24 gi|257389054|ref|YP_003178827.1| - 8.6e-06 25.9 0.0 0.00011 22.3 0.0 2.6 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.16 gi|257389054|ref|YP_003178827.1| - 9e-05 21.7 0.0 0.00017 20.8 0.0 1.3 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_17 PF13207.1 gi|257389054|ref|YP_003178827.1| - 0.00017 22.4 0.0 0.00061 20.5 0.0 2.1 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|257389054|ref|YP_003178827.1| - 0.00021 21.3 0.1 0.0046 16.9 0.0 2.5 2 1 0 2 2 2 1 AAA ATPase domain NTPase_1 PF03266.10 gi|257389054|ref|YP_003178827.1| - 0.00036 20.2 0.1 0.0069 16.1 0.0 2.2 2 0 0 2 2 2 1 NTPase AAA_3 PF07726.6 gi|257389054|ref|YP_003178827.1| - 0.0006 19.4 0.0 0.18 11.3 0.0 2.8 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.12 gi|257389054|ref|YP_003178827.1| - 0.00072 19.0 0.0 0.0088 15.4 0.0 2.1 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_18 PF13238.1 gi|257389054|ref|YP_003178827.1| - 0.0009 19.5 0.1 0.0022 18.2 0.1 1.8 1 1 0 1 1 1 1 AAA domain KTI12 PF08433.5 gi|257389054|ref|YP_003178827.1| - 0.0084 15.3 0.0 0.015 14.5 0.0 1.3 1 0 0 1 1 1 1 Chromatin associated protein KTI12 AAA_30 PF13604.1 gi|257389054|ref|YP_003178827.1| - 0.0087 15.6 0.1 0.024 14.2 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.1 gi|257389054|ref|YP_003178827.1| - 0.011 15.7 0.0 0.024 14.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain RuvB_N PF05496.7 gi|257389054|ref|YP_003178827.1| - 0.012 14.6 0.4 0.052 12.5 0.0 1.9 2 0 0 2 2 2 0 Holliday junction DNA helicase ruvB N-terminus Sigma54_activ_2 PF14532.1 gi|257389054|ref|YP_003178827.1| - 0.023 14.7 0.0 0.06 13.3 0.0 1.6 2 0 0 2 2 1 0 Sigma-54 interaction domain AAA_11 PF13086.1 gi|257389054|ref|YP_003178827.1| - 0.028 14.0 0.0 0.044 13.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain Sigma54_activat PF00158.21 gi|257389054|ref|YP_003178827.1| - 0.04 13.3 0.0 0.077 12.4 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain TIP49 PF06068.8 gi|257389054|ref|YP_003178827.1| - 0.042 12.5 0.0 0.07 11.8 0.0 1.2 1 0 0 1 1 1 0 TIP49 C-terminus Zeta_toxin PF06414.7 gi|257389054|ref|YP_003178827.1| - 0.048 12.7 0.0 0.086 11.9 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_25 PF13481.1 gi|257389054|ref|YP_003178827.1| - 0.068 12.5 0.0 0.15 11.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|257389054|ref|YP_003178827.1| - 0.072 12.9 0.0 0.23 11.3 0.0 1.8 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.1 gi|257389054|ref|YP_003178827.1| - 0.1 12.4 0.0 0.21 11.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain UPF0079 PF02367.12 gi|257389054|ref|YP_003178827.1| - 0.1 12.2 0.0 0.17 11.5 0.0 1.3 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 RNA_helicase PF00910.17 gi|257389054|ref|YP_003178827.1| - 0.15 12.2 0.0 0.38 10.9 0.0 1.7 1 0 0 1 1 1 0 RNA helicase DUF2075 PF09848.4 gi|257389054|ref|YP_003178827.1| - 0.18 10.7 0.0 0.27 10.1 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) PcrB PF01884.12 gi|257389055|ref|YP_003178828.1| - 1.1e-50 172.0 0.9 1.3e-50 171.8 0.6 1.0 1 0 0 1 1 1 1 PcrB family Arylsulfotrans PF05935.6 gi|257389055|ref|YP_003178828.1| - 0.074 11.5 0.0 0.12 10.8 0.0 1.2 1 0 0 1 1 1 0 Arylsulfotransferase (ASST) Trp_syntA PF00290.15 gi|257389055|ref|YP_003178828.1| - 0.088 11.3 0.2 0.56 8.6 0.0 2.0 2 0 0 2 2 2 0 Tryptophan synthase alpha chain NUDIX PF00293.23 gi|257389057|ref|YP_003178830.1| - 1.7e-20 73.0 0.1 2.3e-20 72.5 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain Bac_luciferase PF00296.15 gi|257389058|ref|YP_003178831.1| - 1.3e-05 24.5 7.1 1.8e-05 24.0 4.8 1.4 1 1 0 1 1 1 1 Luciferase-like monooxygenase DAO PF01266.19 gi|257389059|ref|YP_003178832.1| - 1.1e-54 185.6 12.0 1.3e-54 185.4 8.3 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.1 gi|257389059|ref|YP_003178832.1| - 8.3e-07 28.9 2.2 1.8e-06 27.8 1.2 1.9 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.19 gi|257389059|ref|YP_003178832.1| - 2.4e-06 26.6 1.7 3.4e-06 26.1 1.2 1.2 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_3 PF13738.1 gi|257389059|ref|YP_003178832.1| - 2.4e-05 24.5 0.3 7.3e-05 22.9 0.1 1.8 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.9 gi|257389059|ref|YP_003178832.1| - 3.4e-05 23.8 1.0 0.00014 21.7 0.3 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.13 gi|257389059|ref|YP_003178832.1| - 0.00011 21.8 0.1 0.00019 21.1 0.1 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|257389059|ref|YP_003178832.1| - 0.00015 21.1 0.2 0.00027 20.3 0.1 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ApbA PF02558.11 gi|257389059|ref|YP_003178832.1| - 0.00015 21.2 0.2 0.0003 20.2 0.2 1.5 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Pyr_redox PF00070.22 gi|257389059|ref|YP_003178832.1| - 0.00016 22.0 0.9 0.0027 18.0 0.8 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.14 gi|257389059|ref|YP_003178832.1| - 0.0002 20.5 1.7 0.0002 20.5 1.2 1.8 2 1 0 2 2 2 1 FAD binding domain Thi4 PF01946.12 gi|257389059|ref|YP_003178832.1| - 0.00036 19.6 0.1 0.00061 18.9 0.1 1.3 1 0 0 1 1 1 1 Thi4 family HI0933_like PF03486.9 gi|257389059|ref|YP_003178832.1| - 0.00042 18.9 1.0 0.00042 18.9 0.7 1.5 2 0 0 2 2 2 1 HI0933-like protein Toprim_3 PF13362.1 gi|257389059|ref|YP_003178832.1| - 0.0011 19.0 0.1 0.0044 17.2 0.0 1.9 1 1 0 1 1 1 1 Toprim domain NAD_Gly3P_dh_N PF01210.18 gi|257389059|ref|YP_003178832.1| - 0.0019 17.9 0.3 0.003 17.3 0.2 1.3 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_7 PF13241.1 gi|257389059|ref|YP_003178832.1| - 0.0025 18.0 0.1 0.0046 17.1 0.0 1.5 1 0 0 1 1 1 1 Putative NAD(P)-binding ThiF PF00899.16 gi|257389059|ref|YP_003178832.1| - 0.0047 16.7 0.1 0.0081 15.9 0.1 1.5 1 0 0 1 1 1 1 ThiF family FAD_oxidored PF12831.2 gi|257389059|ref|YP_003178832.1| - 0.0059 15.7 3.6 0.016 14.2 2.5 1.8 1 1 0 1 1 1 1 FAD dependent oxidoreductase GIDA PF01134.17 gi|257389059|ref|YP_003178832.1| - 0.0064 15.4 0.9 0.011 14.6 0.6 1.4 1 0 0 1 1 1 1 Glucose inhibited division protein A 2-Hacid_dh_C PF02826.14 gi|257389059|ref|YP_003178832.1| - 0.021 13.9 0.1 0.041 13.0 0.1 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|257389059|ref|YP_003178832.1| - 0.031 14.1 0.0 0.05 13.4 0.0 1.3 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.7 gi|257389059|ref|YP_003178832.1| - 0.039 13.3 0.1 0.064 12.6 0.1 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain AlaDh_PNT_C PF01262.16 gi|257389059|ref|YP_003178832.1| - 0.078 12.5 1.0 0.14 11.6 0.7 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain TrkA_N PF02254.13 gi|257389059|ref|YP_003178832.1| - 0.12 12.4 0.0 0.25 11.3 0.0 1.6 1 0 0 1 1 1 0 TrkA-N domain NAD_binding_10 PF13460.1 gi|257389059|ref|YP_003178832.1| - 0.52 10.2 5.5 0.25 11.3 0.6 2.6 2 1 1 3 3 3 0 NADH(P)-binding adh_short PF00106.20 gi|257389059|ref|YP_003178832.1| - 0.95 9.3 9.7 0.8 9.5 1.3 2.8 2 1 0 3 3 3 0 short chain dehydrogenase HSP20 PF00011.16 gi|257389060|ref|YP_003178833.1| - 3e-09 36.6 0.0 4.1e-09 36.2 0.0 1.2 1 0 0 1 1 1 1 Hsp20/alpha crystallin family zf-Di19 PF05605.7 gi|257389061|ref|YP_003178834.1| - 0.089 12.9 0.5 0.15 12.1 0.3 1.4 1 0 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding TF_Zn_Ribbon PF08271.7 gi|257389061|ref|YP_003178834.1| - 0.23 10.8 3.9 1.5 8.1 0.5 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding DUF429 PF04250.8 gi|257389062|ref|YP_003178835.1| - 1.4e-05 24.4 0.1 4.4e-05 22.8 0.0 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF429) ABC_tran PF00005.22 gi|257389063|ref|YP_003178836.1| - 6.1e-29 101.0 0.0 1.9e-28 99.4 0.0 1.8 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|257389063|ref|YP_003178836.1| - 6.5e-11 42.7 0.2 0.0001 22.3 0.0 2.5 2 1 0 3 3 3 2 AAA domain AAA_29 PF13555.1 gi|257389063|ref|YP_003178836.1| - 0.00045 19.6 0.3 0.0015 18.0 0.2 1.8 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|257389063|ref|YP_003178836.1| - 0.00054 20.3 0.0 0.00073 19.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA PF00004.24 gi|257389063|ref|YP_003178836.1| - 0.0015 18.7 0.0 0.0094 16.1 0.0 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|257389063|ref|YP_003178836.1| - 0.0023 18.0 1.8 0.029 14.4 1.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|257389063|ref|YP_003178836.1| - 0.0029 17.6 1.1 0.0073 16.3 0.4 2.1 1 1 1 2 2 2 1 AAA ATPase domain ArgK PF03308.11 gi|257389063|ref|YP_003178836.1| - 0.0033 16.2 0.1 0.0059 15.4 0.1 1.3 1 0 0 1 1 1 1 ArgK protein AAA_19 PF13245.1 gi|257389063|ref|YP_003178836.1| - 0.01 15.5 0.2 0.036 13.8 0.1 2.0 1 0 0 1 1 1 0 Part of AAA domain Zeta_toxin PF06414.7 gi|257389063|ref|YP_003178836.1| - 0.014 14.4 0.0 0.025 13.6 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin SMC_N PF02463.14 gi|257389063|ref|YP_003178836.1| - 0.023 13.9 0.4 0.096 11.8 0.3 1.9 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain SRP54 PF00448.17 gi|257389063|ref|YP_003178836.1| - 0.042 13.2 0.0 0.075 12.4 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain NTPase_1 PF03266.10 gi|257389063|ref|YP_003178836.1| - 0.045 13.4 1.1 1.6 8.4 0.0 2.8 2 1 2 4 4 4 0 NTPase UPF0079 PF02367.12 gi|257389063|ref|YP_003178836.1| - 0.079 12.5 0.1 0.16 11.5 0.1 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 AAA_33 PF13671.1 gi|257389063|ref|YP_003178836.1| - 0.081 12.7 0.0 0.25 11.2 0.0 1.9 2 0 0 2 2 2 0 AAA domain Transcrip_reg PF01709.15 gi|257389063|ref|YP_003178836.1| - 0.092 11.8 0.0 0.15 11.1 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator AAA_14 PF13173.1 gi|257389063|ref|YP_003178836.1| - 0.1 12.5 0.0 1.2 9.0 0.0 2.3 1 1 1 2 2 2 0 AAA domain AAA_17 PF13207.1 gi|257389063|ref|YP_003178836.1| - 0.17 12.7 2.1 0.63 10.8 1.4 2.2 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|257389063|ref|YP_003178836.1| - 0.22 10.8 5.6 0.19 11.1 0.8 2.7 1 1 1 2 2 2 0 AAA domain AAA_15 PF13175.1 gi|257389063|ref|YP_003178836.1| - 0.26 10.2 0.0 6.6 5.6 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain Phage_holin_2 PF04550.7 gi|257389064|ref|YP_003178837.1| - 0.016 15.2 0.1 0.016 15.2 0.0 2.9 3 0 0 3 3 3 0 Phage holin family 2 ABC2_membrane_3 PF12698.2 gi|257389064|ref|YP_003178837.1| - 0.16 11.0 19.0 0.0088 15.1 9.1 1.7 1 1 0 1 1 1 0 ABC-2 family transporter protein HAD_2 PF13419.1 gi|257389065|ref|YP_003178838.1| - 2.8e-14 53.7 0.4 3.4e-14 53.4 0.3 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.1 gi|257389065|ref|YP_003178838.1| - 4.6e-12 45.4 0.0 8.5e-12 44.6 0.0 1.4 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.21 gi|257389065|ref|YP_003178838.1| - 0.0014 19.1 1.2 0.23 11.8 0.0 2.2 1 1 0 2 2 2 2 haloacid dehalogenase-like hydrolase Radical_SAM PF04055.16 gi|257389067|ref|YP_003178840.1| - 1.9e-14 54.1 0.0 7e-14 52.3 0.0 2.1 1 1 0 1 1 1 1 Radical SAM superfamily HHH PF00633.18 gi|257389067|ref|YP_003178840.1| - 3.3e-06 26.5 0.0 1.4e-05 24.4 0.0 2.2 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH_3 PF12836.2 gi|257389067|ref|YP_003178840.1| - 3.3e-05 23.7 0.0 7.3e-05 22.6 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif PsbU PF06514.6 gi|257389067|ref|YP_003178840.1| - 0.0083 15.9 0.0 0.036 13.8 0.0 2.0 2 0 0 2 2 2 1 Photosystem II 12 kDa extrinsic protein (PsbU) HHH_5 PF14520.1 gi|257389067|ref|YP_003178840.1| - 0.095 12.8 0.0 0.39 10.9 0.0 2.0 2 0 0 2 2 2 0 Helix-hairpin-helix domain UPF0104 PF03706.8 gi|257389068|ref|YP_003178841.1| - 1.2e-33 116.6 25.9 1.2e-33 116.6 17.9 1.6 2 0 0 2 2 2 1 Uncharacterised protein family (UPF0104) Glycos_transf_2 PF00535.21 gi|257389068|ref|YP_003178841.1| - 7.2e-26 90.8 0.0 1.1e-25 90.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|257389068|ref|YP_003178841.1| - 1.5e-13 51.1 0.6 1.5e-13 51.1 0.4 2.5 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.4 gi|257389068|ref|YP_003178841.1| - 5.4e-06 25.7 0.0 8.1e-06 25.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.1 gi|257389068|ref|YP_003178841.1| - 0.0043 17.3 0.0 0.009 16.3 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferase family 2 Cyd_oper_YbgE PF09600.5 gi|257389068|ref|YP_003178841.1| - 0.0072 16.4 2.3 0.23 11.6 0.2 2.8 1 1 1 2 2 2 1 Cyd operon protein YbgE (Cyd_oper_YbgE) TFIIB PF00382.14 gi|257389069|ref|YP_003178842.1| - 3.4e-40 135.6 0.9 5.3e-20 71.0 0.0 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.7 gi|257389069|ref|YP_003178842.1| - 1.5e-16 59.4 4.4 1.1e-15 56.6 2.9 2.3 2 0 0 2 2 2 1 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.6 gi|257389069|ref|YP_003178842.1| - 0.0024 17.4 1.1 0.0065 16.0 0.8 1.7 1 0 0 1 1 1 1 Putative transposase DNA-binding domain A2L_zn_ribbon PF08792.5 gi|257389069|ref|YP_003178842.1| - 0.049 13.1 0.9 0.08 12.4 0.6 1.3 1 0 0 1 1 1 0 A2L zinc ribbon domain HTH_AsnC-type PF13404.1 gi|257389069|ref|YP_003178842.1| - 0.088 12.3 0.2 0.59 9.7 0.0 2.6 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain zf-ribbon_3 PF13248.1 gi|257389069|ref|YP_003178842.1| - 0.11 11.7 0.7 0.2 10.8 0.5 1.4 1 0 0 1 1 1 0 zinc-ribbon domain Auto_anti-p27 PF06677.7 gi|257389069|ref|YP_003178842.1| - 0.17 11.7 1.1 0.3 10.9 0.8 1.4 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Sigma70_r4 PF04545.11 gi|257389069|ref|YP_003178842.1| - 0.25 10.6 3.1 0.72 9.2 0.0 2.9 3 0 0 3 3 3 0 Sigma-70, region 4 MCPsignal PF00015.16 gi|257389070|ref|YP_003178843.1| - 2.1e-55 187.5 53.6 2.5e-52 177.5 27.4 2.1 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain Laminin_II PF06009.7 gi|257389070|ref|YP_003178843.1| - 3.5e-05 23.5 35.1 0.012 15.3 0.7 4.1 3 1 1 4 4 4 3 Laminin Domain II DUF948 PF06103.6 gi|257389070|ref|YP_003178843.1| - 4.3e-05 23.2 24.8 0.12 12.2 0.2 4.8 3 1 0 4 4 4 3 Bacterial protein of unknown function (DUF948) TPR_MLP1_2 PF07926.7 gi|257389070|ref|YP_003178843.1| - 0.00073 19.2 30.3 0.0042 16.8 1.9 3.0 2 1 0 2 2 2 1 TPR/MLP1/MLP2-like protein PUB PF09409.5 gi|257389070|ref|YP_003178843.1| - 0.0068 16.1 0.0 0.023 14.4 0.0 2.0 2 0 0 2 2 1 1 PUB domain Syntaxin PF00804.20 gi|257389070|ref|YP_003178843.1| - 0.0093 16.1 29.1 0.68 10.1 1.7 3.6 1 1 1 3 3 3 2 Syntaxin Syntaxin-6_N PF09177.6 gi|257389070|ref|YP_003178843.1| - 0.1 12.9 27.1 0.077 13.4 0.8 4.0 2 2 2 4 4 4 0 Syntaxin 6, N-terminal STAT_alpha PF01017.15 gi|257389070|ref|YP_003178843.1| - 0.13 11.9 10.2 0.14 11.8 0.2 3.3 2 1 0 3 3 3 0 STAT protein, all-alpha domain IncA PF04156.9 gi|257389070|ref|YP_003178843.1| - 0.2 11.2 25.9 5.1 6.6 6.4 2.8 1 1 1 2 2 2 0 IncA protein CorA PF01544.13 gi|257389070|ref|YP_003178843.1| - 0.22 10.4 12.7 0.046 12.7 0.9 2.3 2 0 0 2 2 2 0 CorA-like Mg2+ transporter protein DUF3140 PF11338.3 gi|257389070|ref|YP_003178843.1| - 0.28 11.3 0.1 0.28 11.3 0.0 2.9 2 2 1 3 3 3 0 Protein of unknown function (DUF3140) Spc7 PF08317.6 gi|257389070|ref|YP_003178843.1| - 0.4 9.2 25.7 0.42 9.2 1.1 3.1 1 1 3 4 4 4 0 Spc7 kinetochore protein DUF1664 PF07889.7 gi|257389070|ref|YP_003178843.1| - 0.41 10.4 27.1 1.8 8.3 0.6 4.2 1 1 3 4 4 4 0 Protein of unknown function (DUF1664) GAS PF13851.1 gi|257389070|ref|YP_003178843.1| - 0.43 9.7 18.2 0.54 9.4 7.0 2.9 1 1 2 3 3 3 0 Growth-arrest specific micro-tubule binding ISG65-75 PF11727.3 gi|257389070|ref|YP_003178843.1| - 0.59 9.1 30.4 1.7 7.6 4.6 2.6 1 1 2 3 3 3 0 Invariant surface glycoprotein BLOC1_2 PF10046.4 gi|257389070|ref|YP_003178843.1| - 0.9 9.7 28.3 5.8 7.1 0.9 4.5 2 2 1 4 4 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 TMP_2 PF06791.8 gi|257389070|ref|YP_003178843.1| - 1 8.9 28.8 0.93 9.0 3.7 3.2 1 1 2 3 3 3 0 Prophage tail length tape measure protein Fib_alpha PF08702.5 gi|257389070|ref|YP_003178843.1| - 1.7 8.7 22.2 7.5 6.6 1.7 3.9 1 1 2 3 3 3 0 Fibrinogen alpha/beta chain family LXG PF04740.7 gi|257389070|ref|YP_003178843.1| - 2.2 8.0 27.2 4.6 6.9 6.3 3.7 1 1 1 3 3 3 0 LXG domain of WXG superfamily Lectin_N PF03954.9 gi|257389070|ref|YP_003178843.1| - 2.3 7.6 11.7 0.27 10.6 0.4 3.1 3 1 0 3 3 3 0 Hepatic lectin, N-terminal domain Spectrin PF00435.16 gi|257389070|ref|YP_003178843.1| - 2.5 8.4 23.5 3.4 8.0 1.3 4.1 2 2 2 4 4 4 0 Spectrin repeat DUF2746 PF10874.3 gi|257389070|ref|YP_003178843.1| - 3.5 7.8 10.9 26 5.1 0.1 4.3 3 1 1 4 4 3 0 Protein of unknown function (DUF2746) TMPIT PF07851.8 gi|257389070|ref|YP_003178843.1| - 3.8 6.5 17.9 0.94 8.4 0.2 3.1 1 1 2 3 3 3 0 TMPIT-like protein COG5 PF10392.4 gi|257389070|ref|YP_003178843.1| - 5.4 6.9 17.2 13 5.7 0.1 4.0 3 1 1 4 4 4 0 Golgi transport complex subunit 5 Muted PF14942.1 gi|257389070|ref|YP_003178843.1| - 5.7 6.8 22.0 7.8 6.3 2.0 2.7 2 2 0 2 2 2 0 Organelle biogenesis, Muted-like protein Spidroin_MaSp PF11260.3 gi|257389070|ref|YP_003178843.1| - 6.8 6.8 17.1 2 8.5 0.1 3.7 3 1 1 4 4 4 0 Major ampullate spidroin 1 and 2 Reo_sigmaC PF04582.7 gi|257389070|ref|YP_003178843.1| - 8.1 5.5 27.5 5.6 6.0 5.9 2.8 1 1 0 2 2 2 0 Reovirus sigma C capsid protein N6_N4_Mtase PF01555.13 gi|257389071|ref|YP_003178844.1| - 4.4e-33 114.7 0.0 6.5e-33 114.1 0.0 1.2 1 0 0 1 1 1 1 DNA methylase Methyltransf_26 PF13659.1 gi|257389071|ref|YP_003178844.1| - 4e-13 49.4 0.3 4.2e-06 26.7 0.0 2.4 2 0 0 2 2 2 2 Methyltransferase domain Methyltransf_11 PF08241.7 gi|257389071|ref|YP_003178844.1| - 5.1e-06 26.8 0.7 0.26 11.8 0.0 3.3 3 1 0 3 3 3 2 Methyltransferase domain UPF0020 PF01170.13 gi|257389071|ref|YP_003178844.1| - 3.3e-05 23.5 0.0 0.19 11.2 0.0 2.3 2 0 0 2 2 2 2 Putative RNA methylase family UPF0020 Methyltransf_31 PF13847.1 gi|257389071|ref|YP_003178844.1| - 0.14 11.7 0.0 2.3 7.7 0.0 2.1 2 0 0 2 2 2 0 Methyltransferase domain MethyltransfD12 PF02086.10 gi|257389071|ref|YP_003178844.1| - 0.16 11.3 0.0 0.23 10.9 0.0 1.2 1 0 0 1 1 1 0 D12 class N6 adenine-specific DNA methyltransferase DHquinase_I PF01487.10 gi|257389072|ref|YP_003178845.1| - 1.2e-44 152.6 0.0 1.5e-44 152.3 0.0 1.0 1 0 0 1 1 1 1 Type I 3-dehydroquinase Hydrolase PF00702.21 gi|257389072|ref|YP_003178845.1| - 0.036 14.4 0.8 0.045 14.1 0.5 1.2 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase TM2 PF05154.11 gi|257389073|ref|YP_003178846.1| - 5.5e-06 26.4 0.2 9.1e-06 25.7 0.1 1.3 1 0 0 1 1 1 1 TM2 domain zf-ribbon_3 PF13248.1 gi|257389073|ref|YP_003178846.1| - 0.00015 20.8 0.5 0.00021 20.3 0.4 1.2 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.2 gi|257389073|ref|YP_003178846.1| - 0.00099 18.8 1.3 0.0015 18.3 0.9 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.1 gi|257389073|ref|YP_003178846.1| - 0.0063 15.9 1.0 0.01 15.3 0.7 1.4 1 0 0 1 1 1 1 zinc-ribbon domain DHQS PF01959.11 gi|257389074|ref|YP_003178847.1| - 2.1e-148 493.7 2.2 2.3e-148 493.5 1.6 1.0 1 0 0 1 1 1 1 3-dehydroquinate synthase (EC 4.6.1.3) QRPTase_C PF01729.14 gi|257389074|ref|YP_003178847.1| - 0.0006 19.3 0.3 0.0092 15.5 0.0 2.4 2 0 0 2 2 2 1 Quinolinate phosphoribosyl transferase, C-terminal domain Hint PF01079.15 gi|257389074|ref|YP_003178847.1| - 0.00069 18.8 0.1 0.0023 17.1 0.0 1.8 1 1 0 1 1 1 1 Hint module Hint_2 PF13403.1 gi|257389074|ref|YP_003178847.1| - 0.0073 16.2 0.9 5.9 6.8 0.0 3.1 4 0 0 4 4 4 2 Hint domain DeoC PF01791.4 gi|257389075|ref|YP_003178848.1| - 2.2e-42 144.9 0.1 2.7e-42 144.7 0.1 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase AP_endonuc_2 PF01261.19 gi|257389075|ref|YP_003178848.1| - 7.6e-05 22.1 0.3 0.00012 21.4 0.2 1.5 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel PucR PF07905.6 gi|257389075|ref|YP_003178848.1| - 0.008 15.7 0.0 4.1 6.9 0.0 2.4 2 0 0 2 2 2 2 Purine catabolism regulatory protein-like family DUF561 PF04481.7 gi|257389075|ref|YP_003178848.1| - 0.058 12.3 0.0 0.11 11.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF561) DUF3666 PF12408.3 gi|257389075|ref|YP_003178848.1| - 0.1 11.7 0.0 0.27 10.3 0.0 1.7 1 0 0 1 1 1 0 Ribose-5-phosphate isomerase ThiG PF05690.9 gi|257389075|ref|YP_003178848.1| - 0.12 11.4 3.5 0.055 12.5 0.4 1.9 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG Trp_syntA PF00290.15 gi|257389076|ref|YP_003178849.1| - 5.8e-90 300.3 0.0 6.6e-90 300.1 0.0 1.0 1 0 0 1 1 1 1 Tryptophan synthase alpha chain PcrB PF01884.12 gi|257389076|ref|YP_003178849.1| - 1.2e-05 24.6 0.9 0.00012 21.4 0.3 2.1 2 0 0 2 2 2 1 PcrB family His_biosynth PF00977.16 gi|257389076|ref|YP_003178849.1| - 8e-05 22.0 0.1 0.00014 21.2 0.1 1.4 1 0 0 1 1 1 1 Histidine biosynthesis protein IGPS PF00218.16 gi|257389076|ref|YP_003178849.1| - 0.065 12.2 0.0 0.12 11.4 0.0 1.3 1 0 0 1 1 1 0 Indole-3-glycerol phosphate synthase PALP PF00291.20 gi|257389077|ref|YP_003178850.1| - 1.2e-32 113.3 0.3 2.1e-32 112.5 0.2 1.3 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme IGPS PF00218.16 gi|257389078|ref|YP_003178851.1| - 9.8e-68 227.9 0.0 1.2e-67 227.6 0.0 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase NanE PF04131.9 gi|257389078|ref|YP_003178851.1| - 2.6e-06 26.5 0.5 7.2e-06 25.1 0.2 1.9 1 1 1 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase FMN_dh PF01070.13 gi|257389078|ref|YP_003178851.1| - 1.5e-05 24.0 2.7 5.4e-05 22.2 1.2 1.9 2 0 0 2 2 2 1 FMN-dependent dehydrogenase QRPTase_C PF01729.14 gi|257389078|ref|YP_003178851.1| - 2.1e-05 24.1 0.1 6.2e-05 22.5 0.0 1.8 2 0 0 2 2 2 1 Quinolinate phosphoribosyl transferase, C-terminal domain Amidohydro_3 PF07969.6 gi|257389078|ref|YP_003178851.1| - 0.0016 17.6 3.0 0.0049 16.1 2.0 1.8 1 1 0 1 1 1 1 Amidohydrolase family His_biosynth PF00977.16 gi|257389078|ref|YP_003178851.1| - 0.0063 15.8 0.0 0.04 13.1 0.0 2.1 2 1 0 2 2 2 1 Histidine biosynthesis protein ThiG PF05690.9 gi|257389078|ref|YP_003178851.1| - 0.016 14.2 3.3 0.15 11.1 0.9 2.8 1 1 0 2 2 2 0 Thiazole biosynthesis protein ThiG K-cyclin_vir_C PF09080.5 gi|257389078|ref|YP_003178851.1| - 0.016 15.3 0.3 0.13 12.5 0.0 2.6 2 1 1 3 3 3 0 K cyclin, C terminal PcrB PF01884.12 gi|257389078|ref|YP_003178851.1| - 0.028 13.6 0.0 0.052 12.7 0.0 1.4 1 0 0 1 1 1 0 PcrB family RTX PF02382.10 gi|257389078|ref|YP_003178851.1| - 0.03 12.5 0.0 0.038 12.2 0.0 1.1 1 0 0 1 1 1 0 RTX N-terminal domain Trp_syntA PF00290.15 gi|257389078|ref|YP_003178851.1| - 0.04 12.4 0.0 0.065 11.7 0.0 1.4 1 0 0 1 1 1 0 Tryptophan synthase alpha chain IMPDH PF00478.20 gi|257389078|ref|YP_003178851.1| - 0.082 11.7 0.2 0.16 10.7 0.0 1.5 2 0 0 2 2 2 0 IMP dehydrogenase / GMP reductase domain DNA_binding_1 PF01035.15 gi|257389079|ref|YP_003178852.1| - 8.9e-09 34.9 0.0 1.3e-08 34.4 0.0 1.3 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain UPF0175 PF03683.8 gi|257389080|ref|YP_003178853.1| - 1.8e-15 56.1 2.2 2e-15 56.0 1.2 1.3 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0175) NYN_YacP PF05991.6 gi|257389081|ref|YP_003178854.1| - 0.0056 16.4 0.2 0.0078 15.9 0.2 1.3 1 0 0 1 1 1 1 YacP-like NYN domain AAA_19 PF13245.1 gi|257389081|ref|YP_003178854.1| - 0.28 10.9 2.2 1.1 9.0 0.4 2.4 2 0 0 2 2 2 0 Part of AAA domain PLDc_N PF13396.1 gi|257389082|ref|YP_003178855.1| - 4.7e-06 26.1 2.7 4.7e-06 26.1 1.8 1.7 2 0 0 2 2 2 1 Phospholipase_D-nuclease N-terminal XK-related PF09815.4 gi|257389082|ref|YP_003178855.1| - 0.00019 20.5 0.9 0.00023 20.3 0.6 1.0 1 0 0 1 1 1 1 XK-related protein PMP1_2 PF08114.6 gi|257389082|ref|YP_003178855.1| - 0.0021 17.5 4.6 0.014 14.9 0.0 2.2 2 0 0 2 2 2 1 ATPase proteolipid family GtrA PF04138.9 gi|257389082|ref|YP_003178855.1| - 0.0037 17.2 1.0 0.0044 16.9 0.7 1.1 1 0 0 1 1 1 1 GtrA-like protein DUF4064 PF13273.1 gi|257389082|ref|YP_003178855.1| - 0.023 14.8 0.8 0.047 13.7 0.5 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF4064) ABC2_membrane_3 PF12698.2 gi|257389082|ref|YP_003178855.1| - 0.027 13.5 0.8 0.031 13.3 0.5 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein TRAM_LAG1_CLN8 PF03798.11 gi|257389082|ref|YP_003178855.1| - 0.051 13.1 4.6 0.059 12.9 3.2 1.0 1 0 0 1 1 1 0 TLC domain DUF4131 PF13567.1 gi|257389082|ref|YP_003178855.1| - 0.13 11.6 1.6 0.18 11.2 1.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) Tetraspannin PF00335.15 gi|257389082|ref|YP_003178855.1| - 0.27 10.4 6.6 0.31 10.2 4.5 1.0 1 0 0 1 1 1 0 Tetraspanin family Oxidored_q2 PF00420.19 gi|257389082|ref|YP_003178855.1| - 0.37 10.4 2.0 0.48 10.0 0.1 1.9 1 1 1 2 2 2 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF1469 PF07332.6 gi|257389082|ref|YP_003178855.1| - 0.63 9.7 5.0 0.85 9.3 3.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1469) DUF4282 PF14110.1 gi|257389082|ref|YP_003178855.1| - 1.6 8.9 5.0 2 8.6 3.5 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4282) DUF2975 PF11188.3 gi|257389082|ref|YP_003178855.1| - 2.7 7.7 5.1 5.4 6.7 3.5 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF2975) DUF3681 PF12442.3 gi|257389082|ref|YP_003178855.1| - 3.6 7.7 8.5 3.7 7.7 0.1 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3681) OppC_N PF12911.2 gi|257389082|ref|YP_003178855.1| - 5.1 6.5 5.6 0.76 9.2 0.1 2.0 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C tRNA-synt_2 PF00152.15 gi|257389083|ref|YP_003178856.1| - 9.7e-89 297.4 0.0 1.3e-88 297.0 0.0 1.2 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.20 gi|257389083|ref|YP_003178856.1| - 1.7e-13 50.2 0.3 3e-13 49.4 0.2 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.15 gi|257389083|ref|YP_003178856.1| - 0.007 15.5 0.5 0.25 10.4 0.1 2.8 3 0 0 3 3 3 1 tRNA synthetases class II core domain (F) Glyco_transf_21 PF13506.1 gi|257389084|ref|YP_003178857.1| - 0.0014 17.9 0.1 0.0054 16.0 0.0 1.9 2 0 0 2 2 2 1 Glycosyl transferase family 21 MFS_1 PF07690.11 gi|257389085|ref|YP_003178858.1| - 8.7e-36 123.3 70.0 3.2e-30 105.0 29.4 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily DUF1451 PF07295.6 gi|257389086|ref|YP_003178859.1| - 0.0091 15.7 0.3 0.011 15.5 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1451) Nudix_N_2 PF14803.1 gi|257389086|ref|YP_003178859.1| - 0.016 14.8 1.5 0.31 10.7 0.0 2.1 2 0 0 2 2 2 0 Nudix N-terminal TF_Zn_Ribbon PF08271.7 gi|257389086|ref|YP_003178859.1| - 0.046 13.0 3.1 1.5 8.1 0.3 2.1 1 1 1 2 2 2 0 TFIIB zinc-binding DZR PF12773.2 gi|257389086|ref|YP_003178859.1| - 0.05 13.4 1.8 0.074 12.8 1.2 1.4 1 1 0 1 1 1 0 Double zinc ribbon FYVE PF01363.16 gi|257389086|ref|YP_003178859.1| - 0.057 13.3 0.3 0.072 13.0 0.2 1.1 1 0 0 1 1 1 0 FYVE zinc finger Zn_Tnp_IS1595 PF12760.2 gi|257389086|ref|YP_003178859.1| - 0.078 12.7 0.8 10 6.0 0.1 2.1 2 0 0 2 2 2 0 Transposase zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|257389086|ref|YP_003178859.1| - 0.085 12.8 2.1 0.12 12.3 1.5 1.3 1 1 0 1 1 1 0 Zinc ribbon domain HypA PF01155.14 gi|257389086|ref|YP_003178859.1| - 0.1 12.2 0.3 0.11 12.2 0.2 1.1 1 0 0 1 1 1 0 Hydrogenase expression/synthesis hypA family zf-NADH-PPase PF09297.6 gi|257389086|ref|YP_003178859.1| - 0.16 11.5 1.0 3.1 7.3 0.0 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Prok-RING_1 PF14446.1 gi|257389086|ref|YP_003178859.1| - 0.2 11.4 1.3 0.49 10.1 0.9 1.6 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 ADK_lid PF05191.9 gi|257389086|ref|YP_003178859.1| - 0.9 9.2 3.2 5.6 6.7 0.2 2.2 2 0 0 2 2 2 0 Adenylate kinase, active site lid zf-ribbon_3 PF13248.1 gi|257389086|ref|YP_003178859.1| - 1.2 8.3 5.1 6.3 6.1 3.5 2.0 1 1 0 1 1 1 0 zinc-ribbon domain Aldo_ket_red PF00248.16 gi|257389087|ref|YP_003178860.1| - 6.6e-36 123.5 0.0 5e-30 104.2 0.0 2.0 2 0 0 2 2 2 2 Aldo/keto reductase family DUF2322 PF10084.4 gi|257389087|ref|YP_003178860.1| - 0.079 12.6 0.0 0.15 11.8 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2322) DHH PF01368.15 gi|257389088|ref|YP_003178861.1| - 2.3e-15 56.5 0.0 3.3e-15 55.9 0.0 1.2 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.14 gi|257389088|ref|YP_003178861.1| - 3e-08 33.2 0.4 6.8e-08 32.1 0.3 1.6 1 0 0 1 1 1 1 DHHA1 domain NAD_binding_10 PF13460.1 gi|257389089|ref|YP_003178862.1| - 1.1e-22 80.8 2.3 4.3e-22 79.0 1.3 1.8 2 0 0 2 2 2 1 NADH(P)-binding Epimerase PF01370.16 gi|257389089|ref|YP_003178862.1| - 4.2e-16 59.0 0.0 9.8e-16 57.8 0.0 1.4 1 1 0 2 2 2 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|257389089|ref|YP_003178862.1| - 9.2e-11 40.9 0.0 9.2e-10 37.6 0.0 2.0 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family TrkA_N PF02254.13 gi|257389089|ref|YP_003178862.1| - 2.3e-09 37.2 1.0 5.1e-09 36.1 0.4 1.8 2 0 0 2 2 2 1 TrkA-N domain F420_oxidored PF03807.12 gi|257389089|ref|YP_003178862.1| - 4e-08 33.5 0.1 9.1e-08 32.4 0.1 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent UDPG_MGDP_dh_N PF03721.9 gi|257389089|ref|YP_003178862.1| - 5.7e-06 25.8 0.1 1e-05 24.9 0.1 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ApbA PF02558.11 gi|257389089|ref|YP_003178862.1| - 3.1e-05 23.4 0.1 5.2e-05 22.7 0.1 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA RmlD_sub_bind PF04321.12 gi|257389089|ref|YP_003178862.1| - 0.00016 20.6 0.2 0.0012 17.8 0.1 2.2 1 1 0 1 1 1 1 RmlD substrate binding domain NAD_binding_2 PF03446.10 gi|257389089|ref|YP_003178862.1| - 0.00027 20.7 0.1 0.00048 19.9 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Semialdhyde_dh PF01118.19 gi|257389089|ref|YP_003178862.1| - 0.00029 21.1 0.1 0.00046 20.4 0.1 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain DAO PF01266.19 gi|257389089|ref|YP_003178862.1| - 0.00063 18.7 1.0 0.00063 18.7 0.7 2.1 1 1 1 2 2 2 1 FAD dependent oxidoreductase GFO_IDH_MocA PF01408.17 gi|257389089|ref|YP_003178862.1| - 0.00082 19.8 0.1 0.0014 19.1 0.1 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold NAD_Gly3P_dh_N PF01210.18 gi|257389089|ref|YP_003178862.1| - 0.0027 17.4 0.0 0.0044 16.7 0.0 1.3 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AlaDh_PNT_C PF01262.16 gi|257389089|ref|YP_003178862.1| - 0.008 15.7 0.2 0.012 15.1 0.1 1.3 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain NmrA PF05368.8 gi|257389089|ref|YP_003178862.1| - 0.013 14.7 0.2 0.019 14.2 0.2 1.2 1 0 0 1 1 1 0 NmrA-like family Rossmann-like PF10727.4 gi|257389089|ref|YP_003178862.1| - 0.014 15.1 0.4 0.026 14.2 0.3 1.5 1 0 0 1 1 1 0 Rossmann-like domain 3HCDH_N PF02737.13 gi|257389089|ref|YP_003178862.1| - 0.02 14.5 0.1 0.073 12.7 0.2 1.8 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IlvN PF07991.7 gi|257389089|ref|YP_003178862.1| - 0.021 14.1 0.1 0.032 13.6 0.1 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain NAD_binding_3 PF03447.11 gi|257389089|ref|YP_003178862.1| - 0.035 14.5 0.8 0.074 13.4 0.6 1.6 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.14 gi|257389089|ref|YP_003178862.1| - 0.04 13.0 0.0 0.071 12.2 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Glyco_transf_28 PF03033.15 gi|257389089|ref|YP_003178862.1| - 0.059 13.1 0.0 0.1 12.3 0.0 1.3 1 0 0 1 1 1 0 Glycosyltransferase family 28 N-terminal domain Saccharop_dh PF03435.13 gi|257389089|ref|YP_003178862.1| - 0.085 11.8 0.8 0.12 11.2 0.5 1.2 1 0 0 1 1 1 0 Saccharopine dehydrogenase DUF1731 PF08338.6 gi|257389089|ref|YP_003178862.1| - 0.12 11.9 0.0 0.23 10.9 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF1731) Pyr_redox PF00070.22 gi|257389089|ref|YP_003178862.1| - 0.14 12.5 0.2 0.36 11.2 0.1 1.7 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase SSP160 PF06933.6 gi|257389091|ref|YP_003178864.1| - 1.5 6.7 4.8 2.5 5.9 3.3 1.2 1 0 0 1 1 1 0 Special lobe-specific silk protein SSP160 T2SE PF00437.15 gi|257389096|ref|YP_003178869.1| - 1.3e-29 102.9 0.0 2e-29 102.3 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_25 PF13481.1 gi|257389096|ref|YP_003178869.1| - 0.00058 19.3 0.3 0.0024 17.3 0.2 2.1 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|257389096|ref|YP_003178869.1| - 0.0013 18.2 0.0 0.0036 16.8 0.0 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain ABC_tran PF00005.22 gi|257389096|ref|YP_003178869.1| - 0.0069 16.6 0.0 0.014 15.6 0.0 1.6 1 0 0 1 1 1 1 ABC transporter cobW PF02492.14 gi|257389096|ref|YP_003178869.1| - 0.024 14.0 0.0 0.039 13.3 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Zeta_toxin PF06414.7 gi|257389096|ref|YP_003178869.1| - 0.027 13.5 0.0 0.074 12.1 0.0 1.7 2 0 0 2 2 2 0 Zeta toxin MobB PF03205.9 gi|257389096|ref|YP_003178869.1| - 0.041 13.5 0.0 1.2 8.8 0.0 2.3 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_23 PF13476.1 gi|257389096|ref|YP_003178869.1| - 0.055 13.7 0.0 0.092 13.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|257389096|ref|YP_003178869.1| - 0.088 13.0 0.2 0.61 10.2 0.0 2.3 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_10 PF12846.2 gi|257389096|ref|YP_003178869.1| - 0.1 12.0 0.0 0.22 10.9 0.0 1.5 1 0 0 1 1 1 0 AAA-like domain AAA_17 PF13207.1 gi|257389096|ref|YP_003178869.1| - 0.14 13.0 0.9 2.7 8.8 0.0 3.0 3 0 0 3 3 3 0 AAA domain Arch_ATPase PF01637.13 gi|257389096|ref|YP_003178869.1| - 0.19 11.3 0.0 0.29 10.7 0.0 1.2 1 0 0 1 1 1 0 Archaeal ATPase AAA_14 PF13173.1 gi|257389096|ref|YP_003178869.1| - 0.22 11.4 0.0 0.38 10.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain DUF1329 PF07044.6 gi|257389097|ref|YP_003178870.1| - 0.18 10.7 0.2 0.23 10.3 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1329) Tropomyosin_1 PF12718.2 gi|257389098|ref|YP_003178871.1| - 0.00032 20.5 2.8 0.00044 20.1 1.9 1.1 1 0 0 1 1 1 1 Tropomyosin like IncA PF04156.9 gi|257389098|ref|YP_003178871.1| - 0.00034 20.2 1.6 0.00047 19.8 1.1 1.2 1 0 0 1 1 1 1 IncA protein Spectrin PF00435.16 gi|257389098|ref|YP_003178871.1| - 0.0039 17.4 1.2 0.0058 16.8 0.8 1.2 1 0 0 1 1 1 1 Spectrin repeat CALCOCO1 PF07888.6 gi|257389098|ref|YP_003178871.1| - 0.0089 14.3 0.4 0.012 13.9 0.3 1.2 1 0 0 1 1 1 1 Calcium binding and coiled-coil domain (CALCOCO1) like ERM PF00769.14 gi|257389098|ref|YP_003178871.1| - 0.012 15.1 1.2 0.017 14.6 0.8 1.1 1 0 0 1 1 1 0 Ezrin/radixin/moesin family ADIP PF11559.3 gi|257389098|ref|YP_003178871.1| - 0.028 14.3 0.6 0.037 13.9 0.4 1.2 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding CENP-F_leu_zip PF10473.4 gi|257389098|ref|YP_003178871.1| - 0.032 14.0 1.9 0.056 13.3 1.3 1.4 1 1 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF2802 PF10975.3 gi|257389098|ref|YP_003178871.1| - 0.032 13.9 0.6 0.11 12.2 0.2 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2802) BLOC1_2 PF10046.4 gi|257389098|ref|YP_003178871.1| - 0.036 14.2 0.1 0.05 13.7 0.0 1.2 1 0 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 HOOK PF05622.7 gi|257389098|ref|YP_003178871.1| - 0.046 11.5 1.7 0.055 11.2 1.2 1.1 1 0 0 1 1 1 0 HOOK protein SlyX PF04102.7 gi|257389098|ref|YP_003178871.1| - 0.048 14.0 3.9 0.094 13.1 1.0 2.5 1 1 1 2 2 2 0 SlyX Tropomyosin PF00261.15 gi|257389098|ref|YP_003178871.1| - 0.062 12.3 7.0 0.2 10.6 4.9 1.7 1 1 0 1 1 1 0 Tropomyosin Fmp27_WPPW PF10359.4 gi|257389098|ref|YP_003178871.1| - 0.064 11.6 0.2 0.073 11.4 0.1 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain DUF3584 PF12128.3 gi|257389098|ref|YP_003178871.1| - 0.067 10.5 3.9 0.079 10.2 2.7 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Lebercilin PF15619.1 gi|257389098|ref|YP_003178871.1| - 0.071 12.5 5.4 0.067 12.6 1.4 2.0 1 1 1 2 2 2 0 Ciliary protein causing Leber congenital amaurosis disease Cortex-I_coil PF09304.5 gi|257389098|ref|YP_003178871.1| - 0.073 13.1 2.9 0.11 12.5 2.0 1.3 1 0 0 1 1 1 0 Cortexillin I, coiled coil Prefoldin_2 PF01920.15 gi|257389098|ref|YP_003178871.1| - 0.13 12.0 1.2 1.7 8.4 0.5 2.3 2 1 0 2 2 2 0 Prefoldin subunit DUF2360 PF10152.4 gi|257389098|ref|YP_003178871.1| - 0.13 12.5 0.3 0.21 11.8 0.2 1.3 1 0 0 1 1 1 0 Predicted coiled-coil domain-containing protein (DUF2360) PhoU PF01895.14 gi|257389098|ref|YP_003178871.1| - 0.15 12.5 2.2 0.27 11.6 1.5 1.5 1 1 0 1 1 1 0 PhoU domain Striatin PF08232.7 gi|257389098|ref|YP_003178871.1| - 0.21 11.9 1.5 0.42 10.9 1.1 1.6 1 1 0 1 1 1 0 Striatin family Vinculin PF01044.14 gi|257389098|ref|YP_003178871.1| - 0.24 9.3 3.1 0.29 9.0 2.1 1.0 1 0 0 1 1 1 0 Vinculin family Rootletin PF15035.1 gi|257389098|ref|YP_003178871.1| - 0.3 11.0 5.2 0.4 10.6 3.6 1.1 1 0 0 1 1 1 0 Ciliary rootlet component, centrosome cohesion Uds1 PF15456.1 gi|257389098|ref|YP_003178871.1| - 0.4 10.6 3.1 0.52 10.3 1.0 1.9 1 1 1 2 2 2 0 Up-regulated During Septation Atg14 PF10186.4 gi|257389098|ref|YP_003178871.1| - 0.43 9.4 3.1 0.52 9.1 2.1 1.1 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 ASD2 PF08687.6 gi|257389098|ref|YP_003178871.1| - 0.44 9.8 7.2 0.56 9.4 5.0 1.2 1 0 0 1 1 1 0 Apx/Shroom domain ASD2 Herpes_UL25 PF01499.11 gi|257389098|ref|YP_003178871.1| - 0.52 8.5 4.5 0.66 8.2 3.1 1.1 1 0 0 1 1 1 0 Herpesvirus UL25 family YqjK PF13997.1 gi|257389098|ref|YP_003178871.1| - 0.6 10.3 5.1 0.24 11.5 0.8 2.4 1 1 2 3 3 3 0 YqjK-like protein DUF4407 PF14362.1 gi|257389098|ref|YP_003178871.1| - 0.68 8.8 3.9 0.82 8.5 2.7 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) DivIC PF04977.10 gi|257389098|ref|YP_003178871.1| - 0.82 9.1 3.0 1.3 8.5 1.6 1.7 1 1 0 1 1 1 0 Septum formation initiator Cep57_CLD_2 PF14197.1 gi|257389098|ref|YP_003178871.1| - 0.92 9.4 9.1 0.14 12.0 3.4 1.9 2 1 0 2 2 1 0 Centrosome localisation domain of PPC89 Hemerythrin PF01814.18 gi|257389098|ref|YP_003178871.1| - 3.3 7.8 7.6 42 4.3 0.2 2.2 1 1 1 2 2 2 0 Hemerythrin HHE cation binding domain CENP-Q PF13094.1 gi|257389098|ref|YP_003178871.1| - 4.6 7.2 8.2 2.9 7.8 3.0 2.0 1 1 1 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit FUSC PF04632.7 gi|257389098|ref|YP_003178871.1| - 6.9 4.9 10.7 9.3 4.5 7.4 1.2 1 0 0 1 1 1 0 Fusaric acid resistance protein family Tubulin PF00091.20 gi|257389099|ref|YP_003178872.1| - 1.1e-22 80.9 0.2 4e-22 79.1 0.2 1.8 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.1 gi|257389099|ref|YP_003178872.1| - 0.022 13.7 0.1 0.022 13.7 0.1 1.7 2 0 0 2 2 2 0 Tubulin like Cementoin PF10511.4 gi|257389099|ref|YP_003178872.1| - 0.35 10.6 3.1 0.71 9.6 1.2 2.2 2 0 0 2 2 2 0 Trappin protein transglutaminase binding domain Phosphodiest PF01663.17 gi|257389100|ref|YP_003178873.1| - 4.5e-59 200.6 0.4 5.2e-59 200.4 0.3 1.0 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.18 gi|257389100|ref|YP_003178873.1| - 0.011 15.0 3.7 0.018 14.2 0.6 2.2 2 0 0 2 2 2 0 Sulfatase DUF2063 PF09836.4 gi|257389100|ref|YP_003178873.1| - 0.062 13.2 0.2 0.14 12.1 0.1 1.6 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2063) Pyrophosphatase PF00719.14 gi|257389102|ref|YP_003178875.1| - 2e-54 183.2 1.4 2.3e-54 183.0 1.0 1.0 1 0 0 1 1 1 1 Inorganic pyrophosphatase PadR PF03551.9 gi|257389103|ref|YP_003178876.1| - 4.2e-17 61.6 0.5 5.9e-17 61.2 0.3 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|257389103|ref|YP_003178876.1| - 0.00017 21.8 0.0 0.00033 20.9 0.0 1.5 2 0 0 2 2 2 1 Winged helix DNA-binding domain DUF1495 PF07381.6 gi|257389103|ref|YP_003178876.1| - 0.0011 18.6 0.1 0.0018 17.9 0.0 1.5 1 1 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) HTH_45 PF14947.1 gi|257389103|ref|YP_003178876.1| - 0.031 14.0 0.0 0.05 13.4 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix SMC_N PF02463.14 gi|257389103|ref|YP_003178876.1| - 0.035 13.3 0.0 0.045 12.9 0.0 1.2 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain DUF505 PF04458.7 gi|257389103|ref|YP_003178876.1| - 0.044 11.8 0.1 0.051 11.7 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF505) RVT_3 PF13456.1 gi|257389105|ref|YP_003178878.1| - 5.9e-21 74.0 0.1 8.3e-21 73.5 0.0 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like RNase_H PF00075.19 gi|257389105|ref|YP_003178878.1| - 1.6e-11 44.7 0.0 2.9e-11 43.8 0.0 1.4 2 0 0 2 2 2 1 RNase H PaaA_PaaC PF05138.7 gi|257389105|ref|YP_003178878.1| - 0.088 11.7 0.0 0.14 11.0 0.0 1.3 1 0 0 1 1 1 0 Phenylacetic acid catabolic protein TrmB PF01978.14 gi|257389106|ref|YP_003178879.1| - 0.055 13.1 0.0 0.14 11.8 0.0 1.7 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB GntR PF00392.16 gi|257389106|ref|YP_003178879.1| - 0.099 12.0 0.0 0.47 9.9 0.0 2.1 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family RDD PF06271.7 gi|257389108|ref|YP_003178881.1| - 3.2e-23 82.1 5.1 3.7e-23 81.9 3.6 1.0 1 0 0 1 1 1 1 RDD family BTP PF05232.7 gi|257389108|ref|YP_003178881.1| - 0.39 10.4 3.6 0.82 9.4 2.5 1.6 1 0 0 1 1 1 0 Bacterial Transmembrane Pair family NUDIX PF00293.23 gi|257389109|ref|YP_003178882.1| - 9.4e-18 64.1 0.2 1.2e-17 63.7 0.1 1.1 1 0 0 1 1 1 1 NUDIX domain Ribosomal_S10 PF00338.17 gi|257389111|ref|YP_003178884.1| - 2.6e-13 49.6 0.0 2.9e-13 49.4 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e SecA_PP_bind PF01043.15 gi|257389111|ref|YP_003178884.1| - 0.02 15.2 0.1 0.032 14.6 0.0 1.2 1 0 0 1 1 1 0 SecA preprotein cross-linking domain Aldo_ket_red PF00248.16 gi|257389112|ref|YP_003178885.1| - 4.2e-73 245.6 0.0 4.7e-73 245.4 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family Peptidase_M13 PF01431.16 gi|257389112|ref|YP_003178885.1| - 0.062 12.4 0.0 0.12 11.5 0.0 1.3 1 0 0 1 1 1 0 Peptidase family M13 MF_alpha_N PF05436.6 gi|257389112|ref|YP_003178885.1| - 0.099 12.3 0.0 0.16 11.6 0.0 1.3 1 0 0 1 1 1 0 Mating factor alpha precursor N-terminus RHH_1 PF01402.16 gi|257389113|ref|YP_003178886.1| - 0.032 14.1 0.6 0.41 10.6 0.0 2.2 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family HhH-GPD PF00730.20 gi|257389114|ref|YP_003178887.1| - 8.4e-18 64.6 0.0 1.3e-17 64.0 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein EndIII_4Fe-2S PF10576.4 gi|257389114|ref|YP_003178887.1| - 5.9e-05 23.0 7.8 0.00015 21.7 5.4 1.8 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH PF00633.18 gi|257389114|ref|YP_003178887.1| - 0.0062 16.1 0.2 0.026 14.1 0.0 2.2 3 0 0 3 3 3 1 Helix-hairpin-helix motif DUF732 PF05305.9 gi|257389114|ref|YP_003178887.1| - 0.054 13.5 0.3 0.14 12.2 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF732) DUF2400 PF09674.5 gi|257389114|ref|YP_003178887.1| - 0.084 12.5 0.0 0.14 11.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2400) DUF371 PF04027.8 gi|257389115|ref|YP_003178888.1| - 2.4e-52 176.0 0.9 2.7e-52 175.9 0.6 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF371) Glyco_hydro_2 PF00703.16 gi|257389117|ref|YP_003178890.1| - 8.6e-08 32.6 0.0 2.2e-07 31.3 0.0 1.7 1 0 0 1 1 1 1 Glycosyl hydrolases family 2 Glyco_hydro_2_N PF02837.13 gi|257389117|ref|YP_003178890.1| - 1.9e-07 30.7 0.0 3.7e-07 29.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl hydrolases family 2, sugar binding domain Glyco_hydro_2_C PF02836.12 gi|257389117|ref|YP_003178890.1| - 0.17 10.7 0.0 0.43 9.4 0.0 1.6 2 0 0 2 2 2 0 Glycosyl hydrolases family 2, TIM barrel domain Reo_sigmaC PF04582.7 gi|257389118|ref|YP_003178891.1| - 0.56 9.3 6.8 1.3 8.1 1.2 2.2 1 1 1 2 2 2 0 Reovirus sigma C capsid protein Laminin_II PF06009.7 gi|257389118|ref|YP_003178891.1| - 3.2 7.5 32.7 2.5 7.8 8.8 3.8 1 1 3 4 4 4 0 Laminin Domain II AAA_13 PF13166.1 gi|257389118|ref|YP_003178891.1| - 5.5 5.3 46.2 0.5 8.7 21.9 2.1 1 1 1 2 2 2 0 AAA domain DUF1664 PF07889.7 gi|257389118|ref|YP_003178891.1| - 6.6 6.5 28.6 1.5 8.6 4.9 3.4 2 1 1 3 3 3 0 Protein of unknown function (DUF1664) LysE PF01810.13 gi|257389119|ref|YP_003178892.1| - 9.6e-26 90.2 10.1 1.9e-24 85.9 7.0 2.0 1 1 0 1 1 1 1 LysE type translocator HD PF01966.17 gi|257389120|ref|YP_003178893.1| - 9.1e-18 64.4 1.3 9.1e-18 64.4 0.9 1.7 2 0 0 2 2 2 1 HD domain HD_4 PF13328.1 gi|257389120|ref|YP_003178893.1| - 0.04 13.6 1.9 0.041 13.6 0.2 1.7 2 0 0 2 2 2 0 HD domain XylR_N PF06505.6 gi|257389120|ref|YP_003178893.1| - 0.098 12.0 0.0 0.52 9.7 0.0 1.9 2 0 0 2 2 2 0 Activator of aromatic catabolism Acetyltransf_1 PF00583.19 gi|257389121|ref|YP_003178894.1| - 6.2e-13 48.5 0.0 1e-12 47.8 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.1 gi|257389121|ref|YP_003178894.1| - 9.6e-11 41.8 0.0 4.3e-10 39.7 0.0 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|257389121|ref|YP_003178894.1| - 4e-08 33.2 0.0 9.3e-08 32.1 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.1 gi|257389121|ref|YP_003178894.1| - 2.3e-06 27.8 0.0 3.3e-06 27.3 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|257389121|ref|YP_003178894.1| - 4.8e-06 26.5 0.0 6.7e-06 26.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.1 gi|257389121|ref|YP_003178894.1| - 0.00046 20.0 0.1 0.0024 17.7 0.0 2.1 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.1 gi|257389121|ref|YP_003178894.1| - 0.006 16.4 0.0 0.018 14.9 0.0 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.1 gi|257389121|ref|YP_003178894.1| - 0.013 15.3 0.0 0.027 14.3 0.0 1.5 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Zn-ribbon_8 PF09723.5 gi|257389121|ref|YP_003178894.1| - 0.041 13.8 0.5 0.074 13.0 0.3 1.4 1 0 0 1 1 1 0 Zinc ribbon domain FR47 PF08445.5 gi|257389121|ref|YP_003178894.1| - 0.1 12.3 0.0 0.24 11.1 0.0 1.5 1 0 0 1 1 1 0 FR47-like protein DNA_RNApol_7kD PF03604.8 gi|257389121|ref|YP_003178894.1| - 0.17 11.3 2.0 0.3 10.5 1.4 1.3 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit DUF912 PF06024.7 gi|257389122|ref|YP_003178895.1| - 0.011 15.7 0.0 0.011 15.7 0.0 1.1 1 0 0 1 1 1 0 Nucleopolyhedrovirus protein of unknown function (DUF912) MotA_ExbB PF01618.11 gi|257389122|ref|YP_003178895.1| - 0.049 13.2 0.9 0.053 13.1 0.6 1.0 1 0 0 1 1 1 0 MotA/TolQ/ExbB proton channel family DUF621 PF04789.10 gi|257389122|ref|YP_003178895.1| - 0.059 12.3 0.0 0.064 12.2 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF621) COX4 PF02936.9 gi|257389122|ref|YP_003178895.1| - 0.065 12.9 0.1 0.075 12.7 0.1 1.0 1 0 0 1 1 1 0 Cytochrome c oxidase subunit IV DUF347 PF03988.7 gi|257389122|ref|YP_003178895.1| - 0.26 11.2 3.0 0.33 10.8 2.1 1.2 1 0 0 1 1 1 0 Repeat of Unknown Function (DUF347) Rieske PF00355.21 gi|257389123|ref|YP_003178896.1| - 3.4e-08 32.9 0.0 7.6e-08 31.8 0.0 1.6 1 1 1 2 2 2 1 Rieske [2Fe-2S] domain HTH_20 PF12840.2 gi|257389124|ref|YP_003178897.1| - 0.0038 16.9 0.9 0.0067 16.2 0.6 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Zn-ribbon_8 PF09723.5 gi|257389124|ref|YP_003178897.1| - 0.016 15.1 2.9 0.043 13.7 2.0 1.8 1 0 0 1 1 1 0 Zinc ribbon domain PhnA_Zn_Ribbon PF08274.7 gi|257389124|ref|YP_003178897.1| - 0.026 14.3 3.2 1.1 9.1 0.3 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zf-ISL3 PF14690.1 gi|257389124|ref|YP_003178897.1| - 0.065 13.2 0.7 5.6 7.0 0.1 2.2 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 HNH PF01844.18 gi|257389124|ref|YP_003178897.1| - 0.16 11.8 1.9 1.3 8.9 0.3 2.6 2 1 1 3 3 3 0 HNH endonuclease FYDLN_acid PF09538.5 gi|257389124|ref|YP_003178897.1| - 0.17 12.4 0.8 0.17 12.4 0.6 1.6 2 0 0 2 2 2 0 Protein of unknown function (FYDLN_acid) DZR PF12773.2 gi|257389124|ref|YP_003178897.1| - 0.2 11.4 2.4 0.43 10.4 1.7 1.5 1 1 0 1 1 1 0 Double zinc ribbon zf-trcl PF13451.1 gi|257389124|ref|YP_003178897.1| - 0.99 9.0 7.1 0.12 12.0 0.9 2.1 1 1 1 2 2 2 0 Probable zinc-binding domain UPF0547 PF10571.4 gi|257389124|ref|YP_003178897.1| - 3.2 7.5 5.6 17 5.2 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 FAD_binding_6 PF00970.19 gi|257389125|ref|YP_003178898.1| - 1e-12 48.0 0.0 1.4e-12 47.6 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain POR_N PF01855.14 gi|257389126|ref|YP_003178899.1| - 1.4e-62 211.2 0.3 2.6e-62 210.3 0.2 1.5 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.13 gi|257389126|ref|YP_003178899.1| - 2.3e-41 141.5 0.6 5.5e-41 140.3 0.4 1.6 1 0 0 1 1 1 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_N PF02776.13 gi|257389126|ref|YP_003178899.1| - 7.5e-07 28.7 0.2 1.7e-06 27.6 0.1 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Urotensin_II PF02083.10 gi|257389126|ref|YP_003178899.1| - 0.13 11.6 0.3 0.27 10.6 0.2 1.5 1 0 0 1 1 1 0 Urotensin II TPP_enzyme_C PF02775.16 gi|257389127|ref|YP_003178900.1| - 1.4e-32 112.4 0.3 2e-32 111.8 0.2 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.3 gi|257389127|ref|YP_003178900.1| - 1.6e-14 53.5 0.1 3.4e-14 52.5 0.1 1.6 1 0 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal RNA_POL_M_15KD PF02150.11 gi|257389128|ref|YP_003178901.1| - 3.7e-07 29.6 3.3 6.9e-07 28.8 1.0 2.2 2 0 0 2 2 2 1 RNA polymerases M/15 Kd subunit OrfB_Zn_ribbon PF07282.6 gi|257389128|ref|YP_003178901.1| - 0.0016 18.0 8.8 0.014 15.0 1.5 2.3 2 1 0 2 2 2 2 Putative transposase DNA-binding domain TFIIS_C PF01096.13 gi|257389128|ref|YP_003178901.1| - 0.0089 15.6 0.6 0.0089 15.6 0.4 3.7 4 0 0 4 4 4 1 Transcription factor S-II (TFIIS) DZR PF12773.2 gi|257389128|ref|YP_003178901.1| - 0.013 15.3 1.3 0.013 15.3 0.9 2.5 2 1 0 2 2 2 0 Double zinc ribbon DUF4379 PF14311.1 gi|257389128|ref|YP_003178901.1| - 0.1 12.4 4.5 0.93 9.3 0.2 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4379) DUF2387 PF09526.5 gi|257389128|ref|YP_003178901.1| - 0.33 10.9 5.7 5.1 7.1 0.1 2.4 2 0 0 2 2 2 0 Probable metal-binding protein (DUF2387) PHF5 PF03660.9 gi|257389128|ref|YP_003178901.1| - 0.34 10.9 2.6 0.2 11.7 0.5 1.6 2 0 0 2 2 2 0 PHF5-like protein zf-UBP PF02148.14 gi|257389128|ref|YP_003178901.1| - 0.68 10.0 5.9 5.3 7.2 1.0 2.3 2 0 0 2 2 2 0 Zn-finger in ubiquitin-hydrolases and other protein Prok-RING_1 PF14446.1 gi|257389128|ref|YP_003178901.1| - 1.6 8.5 7.8 0.18 11.5 0.6 2.4 3 0 0 3 3 3 0 Prokaryotic RING finger family 1 DUF2318 PF10080.4 gi|257389128|ref|YP_003178901.1| - 1.8 8.3 4.6 1.8 8.3 0.6 2.2 2 1 0 2 2 2 0 Predicted membrane protein (DUF2318) zinc-ribbons_6 PF07191.7 gi|257389128|ref|YP_003178901.1| - 4.1 7.2 6.7 0.44 10.3 0.8 2.1 3 0 0 3 3 3 0 zinc-ribbons PhnA_Zn_Ribbon PF08274.7 gi|257389128|ref|YP_003178901.1| - 4.9 7.0 11.4 12 5.8 0.2 3.4 4 0 0 4 4 4 0 PhnA Zinc-Ribbon PhoU PF01895.14 gi|257389129|ref|YP_003178902.1| - 1.6 9.2 8.6 8.1 6.9 0.2 3.5 4 0 0 4 4 4 0 PhoU domain DAO PF01266.19 gi|257389130|ref|YP_003178903.1| - 1.9e-12 46.8 0.0 1.2e-05 24.4 0.0 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase Lycopene_cycl PF05834.7 gi|257389130|ref|YP_003178903.1| - 7.3e-10 38.3 0.0 1.5e-09 37.2 0.0 1.5 2 0 0 2 2 2 1 Lycopene cyclase protein Trp_halogenase PF04820.9 gi|257389130|ref|YP_003178903.1| - 9.2e-08 31.1 0.0 6.8e-05 21.6 0.0 2.8 2 1 0 3 3 3 2 Tryptophan halogenase Pyr_redox_2 PF07992.9 gi|257389130|ref|YP_003178903.1| - 1.7e-06 28.0 0.0 3.7e-06 26.9 0.0 1.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|257389130|ref|YP_003178903.1| - 3.7e-06 26.2 0.7 1.3e-05 24.4 0.5 1.8 1 1 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|257389130|ref|YP_003178903.1| - 4.7e-06 25.7 0.0 0.00015 20.7 0.0 2.1 1 1 1 2 2 2 1 FAD binding domain HI0933_like PF03486.9 gi|257389130|ref|YP_003178903.1| - 5.7e-06 25.0 0.0 0.00073 18.1 0.0 2.1 2 0 0 2 2 2 2 HI0933-like protein Thi4 PF01946.12 gi|257389130|ref|YP_003178903.1| - 7.2e-05 21.9 0.0 0.00087 18.4 0.0 2.2 2 0 0 2 2 2 1 Thi4 family NAD_binding_8 PF13450.1 gi|257389130|ref|YP_003178903.1| - 0.00028 20.8 0.0 0.00086 19.2 0.0 1.9 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.17 gi|257389130|ref|YP_003178903.1| - 0.00032 19.6 0.0 0.091 11.5 0.0 2.1 2 0 0 2 2 2 2 Glucose inhibited division protein A FAD_binding_3 PF01494.14 gi|257389130|ref|YP_003178903.1| - 0.0024 16.9 0.0 0.39 9.7 0.0 2.6 2 1 0 2 2 2 1 FAD binding domain Pyr_redox_3 PF13738.1 gi|257389130|ref|YP_003178903.1| - 0.034 14.2 0.0 0.076 13.0 0.0 1.6 1 1 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.13 gi|257389130|ref|YP_003178903.1| - 0.082 12.9 0.0 0.19 11.7 0.0 1.6 1 0 0 1 1 1 0 TrkA-N domain CPSase_L_chain PF00289.17 gi|257389130|ref|YP_003178903.1| - 0.15 12.2 0.0 0.37 10.9 0.0 1.6 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, N-terminal domain NAD_kinase PF01513.16 gi|257389131|ref|YP_003178904.1| - 1.8e-16 59.7 0.8 2.2e-16 59.5 0.5 1.1 1 0 0 1 1 1 1 ATP-NAD kinase DUF3203 PF11462.3 gi|257389131|ref|YP_003178904.1| - 0.094 12.6 0.5 0.35 10.7 0.3 2.0 1 1 0 1 1 1 0 Protein of unknown function (DUF3203) DUF2723 PF11028.3 gi|257389134|ref|YP_003178907.1| - 0.014 14.8 0.2 0.017 14.5 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2723) DUF3814 PF12769.2 gi|257389134|ref|YP_003178907.1| - 0.075 13.1 0.2 0.23 11.6 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF3814) TPT PF03151.11 gi|257389134|ref|YP_003178907.1| - 0.076 12.6 0.0 0.091 12.4 0.0 1.0 1 0 0 1 1 1 0 Triose-phosphate Transporter family Cytochrom_B_C PF00032.12 gi|257389135|ref|YP_003178908.1| - 8.4e-08 32.3 0.5 8.4e-08 32.3 0.3 1.6 2 0 0 2 2 2 1 Cytochrome b(C-terminal)/b6/petD HIG_1_N PF04588.8 gi|257389135|ref|YP_003178908.1| - 0.074 12.7 0.5 6.5 6.5 0.1 2.6 2 0 0 2 2 2 0 Hypoxia induced protein conserved region Cytochrom_B_N_2 PF13631.1 gi|257389136|ref|YP_003178909.1| - 2.5e-39 134.7 13.2 2.5e-39 134.7 9.2 2.0 2 0 0 2 2 2 1 Cytochrome b(N-terminal)/b6/petB Cytochrom_B_N PF00033.14 gi|257389136|ref|YP_003178909.1| - 1.2e-11 44.3 16.0 1.6e-11 43.8 11.1 1.2 1 0 0 1 1 1 1 Cytochrome b(N-terminal)/b6/petB Ni_hydr_CYTB PF01292.15 gi|257389136|ref|YP_003178909.1| - 0.13 11.5 19.8 0.051 12.9 2.5 2.3 1 1 1 2 2 2 0 Prokaryotic cytochrome b561 PepSY_TM PF03929.11 gi|257389136|ref|YP_003178909.1| - 6.7 7.3 13.0 4.4 7.9 0.0 3.8 3 1 0 3 3 3 0 PepSY-associated TM helix Rieske PF00355.21 gi|257389137|ref|YP_003178910.1| - 1.6e-07 30.7 0.1 3.2e-07 29.8 0.1 1.5 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain DUF1673 PF07895.6 gi|257389138|ref|YP_003178911.1| - 0.021 14.3 0.0 0.025 14.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1673) DUF3816 PF12822.2 gi|257389138|ref|YP_003178911.1| - 0.032 14.1 2.6 0.039 13.8 1.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3816) Copper-bind PF00127.15 gi|257389139|ref|YP_003178912.1| - 1e-13 51.3 0.1 3.2e-13 49.7 0.1 1.8 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.1 gi|257389139|ref|YP_003178912.1| - 0.0079 16.0 0.0 0.014 15.3 0.0 1.4 1 0 0 1 1 1 1 Cupredoxin-like domain TAT_signal PF10518.4 gi|257389139|ref|YP_003178912.1| - 0.015 15.2 5.5 0.015 15.2 3.8 2.9 4 0 0 4 4 4 0 TAT (twin-arginine translocation) pathway signal sequence IncA PF04156.9 gi|257389140|ref|YP_003178913.1| - 0.005 16.4 1.1 0.0083 15.7 0.8 1.3 1 0 0 1 1 1 1 IncA protein DUF872 PF05915.7 gi|257389140|ref|YP_003178913.1| - 4.3 7.2 4.7 8 6.3 3.3 1.4 1 0 0 1 1 1 0 Eukaryotic protein of unknown function (DUF872) PsbJ PF01788.12 gi|257389141|ref|YP_003178914.1| - 3.2 7.3 12.4 0.12 11.9 1.2 2.8 3 0 0 3 3 3 0 PsbJ HhH-GPD PF00730.20 gi|257389142|ref|YP_003178915.1| - 8.4e-22 77.5 0.0 1.1e-21 77.0 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.18 gi|257389142|ref|YP_003178915.1| - 1.9e-08 33.5 0.3 4.9e-08 32.2 0.0 1.9 2 0 0 2 2 2 1 Helix-hairpin-helix motif EndIII_4Fe-2S PF10576.4 gi|257389142|ref|YP_003178915.1| - 1.8e-05 24.7 2.9 2.9e-05 24.0 2.0 1.4 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH_5 PF14520.1 gi|257389142|ref|YP_003178915.1| - 0.01 15.9 0.1 0.24 11.6 0.1 2.0 1 1 1 2 2 2 0 Helix-hairpin-helix domain IMS_HHH PF11798.3 gi|257389142|ref|YP_003178915.1| - 0.021 14.8 0.0 0.054 13.5 0.0 1.7 1 0 0 1 1 1 0 IMS family HHH motif DinI PF06183.8 gi|257389142|ref|YP_003178915.1| - 0.036 14.0 0.0 0.073 13.0 0.0 1.5 1 0 0 1 1 1 0 DinI-like family DUF3349 PF11829.3 gi|257389142|ref|YP_003178915.1| - 0.059 13.8 0.1 0.13 12.7 0.0 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3349) HHH_8 PF14716.1 gi|257389142|ref|YP_003178915.1| - 0.11 12.7 0.0 0.26 11.5 0.0 1.6 1 0 0 1 1 1 0 Helix-hairpin-helix domain AhpC-TSA PF00578.16 gi|257389143|ref|YP_003178916.1| - 1.3e-11 44.2 0.0 1.8e-11 43.7 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.5 gi|257389143|ref|YP_003178916.1| - 4.3e-08 32.8 0.0 6.6e-08 32.2 0.0 1.3 1 1 0 1 1 1 1 Redoxin Acetyltransf_3 PF13302.1 gi|257389144|ref|YP_003178917.1| - 6e-30 104.2 0.0 7.5e-30 103.9 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.1 gi|257389144|ref|YP_003178917.1| - 4.5e-19 68.9 0.0 5.5e-19 68.6 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.19 gi|257389144|ref|YP_003178917.1| - 1.9e-11 43.7 0.2 2.9e-11 43.2 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_8 PF13523.1 gi|257389144|ref|YP_003178917.1| - 7.4e-10 38.8 0.1 1.6e-09 37.8 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.1 gi|257389144|ref|YP_003178917.1| - 7.6e-05 22.7 0.0 0.00012 22.1 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.1 gi|257389144|ref|YP_003178917.1| - 0.00089 19.3 0.0 0.0011 19.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.5 gi|257389144|ref|YP_003178917.1| - 0.021 14.5 0.1 0.035 13.8 0.0 1.3 1 0 0 1 1 1 0 FR47-like protein RtcB PF01139.12 gi|257389145|ref|YP_003178918.1| - 1.5e-104 350.3 0.0 1.9e-104 350.0 0.0 1.1 1 0 0 1 1 1 1 tRNA-splicing ligase RtcB DUF998 PF06197.8 gi|257389146|ref|YP_003178919.1| - 0.029 13.6 1.8 0.034 13.4 1.3 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF998) DUF418 PF04235.7 gi|257389146|ref|YP_003178919.1| - 0.047 13.3 0.2 0.072 12.7 0.1 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF418) TRAM_LAG1_CLN8 PF03798.11 gi|257389146|ref|YP_003178919.1| - 0.098 12.1 1.6 0.13 11.8 1.1 1.2 1 0 0 1 1 1 0 TLC domain Acyl-CoA_dh_1 PF00441.19 gi|257389147|ref|YP_003178920.1| - 1.6e-49 167.9 0.4 2.3e-49 167.3 0.3 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.11 gi|257389147|ref|YP_003178920.1| - 6.4e-36 123.3 0.1 1.3e-35 122.3 0.1 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.14 gi|257389147|ref|YP_003178920.1| - 3.1e-20 71.4 2.7 2.2e-17 62.2 0.2 3.3 2 1 1 3 3 3 2 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|257389147|ref|YP_003178920.1| - 2e-18 66.9 0.4 3.3e-18 66.2 0.3 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain RIO1 PF01163.17 gi|257389148|ref|YP_003178921.1| - 9.8e-10 38.0 0.0 1.6e-09 37.4 0.0 1.2 1 0 0 1 1 1 1 RIO1 family APH PF01636.18 gi|257389148|ref|YP_003178921.1| - 5.8e-08 32.7 2.6 0.00055 19.7 0.3 2.4 1 1 1 2 2 2 2 Phosphotransferase enzyme family Kdo PF06293.9 gi|257389148|ref|YP_003178921.1| - 2.4e-06 26.7 0.0 4.4e-06 25.9 0.0 1.3 1 0 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase PF00069.20 gi|257389148|ref|YP_003178921.1| - 0.00059 19.0 0.0 0.00083 18.5 0.0 1.1 1 0 0 1 1 1 1 Protein kinase domain WaaY PF06176.6 gi|257389148|ref|YP_003178921.1| - 0.13 11.4 0.0 0.2 10.8 0.0 1.2 1 0 0 1 1 1 0 Lipopolysaccharide core biosynthesis protein (WaaY) EamA PF00892.15 gi|257389149|ref|YP_003178922.1| - 4.9e-26 91.2 28.9 1.9e-13 50.5 8.3 2.1 2 0 0 2 2 2 2 EamA-like transporter family EmrE PF13536.1 gi|257389149|ref|YP_003178922.1| - 3.9e-05 23.8 12.2 3.9e-05 23.8 8.5 3.7 2 2 2 4 4 4 2 Multidrug resistance efflux transporter DUF914 PF06027.7 gi|257389149|ref|YP_003178922.1| - 0.00038 19.4 4.5 0.00038 19.4 3.1 1.4 1 1 0 1 1 1 1 Eukaryotic protein of unknown function (DUF914) UAA PF08449.6 gi|257389149|ref|YP_003178922.1| - 0.41 9.5 4.3 2.9 6.7 0.5 2.2 2 0 0 2 2 2 0 UAA transporter family TPT PF03151.11 gi|257389149|ref|YP_003178922.1| - 0.8 9.3 9.6 0.2 11.2 3.3 2.4 2 1 0 2 2 2 0 Triose-phosphate Transporter family Pyr_redox_2 PF07992.9 gi|257389150|ref|YP_003178923.1| - 4.9e-14 52.6 1.5 3.7e-11 43.3 0.1 2.1 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.19 gi|257389150|ref|YP_003178923.1| - 7.2e-08 31.7 3.4 0.00079 18.4 0.1 2.1 1 1 1 2 2 2 2 FAD dependent oxidoreductase FAD_binding_3 PF01494.14 gi|257389150|ref|YP_003178923.1| - 1.1e-07 31.3 3.9 7.9e-05 21.8 0.0 2.1 1 1 1 2 2 2 2 FAD binding domain HI0933_like PF03486.9 gi|257389150|ref|YP_003178923.1| - 1.4e-06 27.0 0.1 8.1e-05 21.2 0.0 2.1 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_2 PF00890.19 gi|257389150|ref|YP_003178923.1| - 5.7e-06 25.4 2.9 1.2e-05 24.3 0.1 2.0 1 1 1 2 2 2 1 FAD binding domain Pyr_redox_3 PF13738.1 gi|257389150|ref|YP_003178923.1| - 1.9e-05 24.8 2.4 0.027 14.5 0.1 2.1 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.12 gi|257389150|ref|YP_003178923.1| - 0.00013 21.1 0.7 0.00051 19.2 0.1 2.1 1 1 1 2 2 2 1 Thi4 family GIDA PF01134.17 gi|257389150|ref|YP_003178923.1| - 0.00047 19.1 0.8 0.0052 15.7 0.0 2.2 1 1 1 2 2 2 1 Glucose inhibited division protein A NAD_binding_9 PF13454.1 gi|257389150|ref|YP_003178923.1| - 0.00095 18.9 1.0 0.28 10.9 0.2 2.4 2 0 0 2 2 2 2 FAD-NAD(P)-binding NAD_binding_8 PF13450.1 gi|257389150|ref|YP_003178923.1| - 0.0017 18.3 0.0 0.0042 17.0 0.0 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain K_oxygenase PF13434.1 gi|257389150|ref|YP_003178923.1| - 0.0019 17.1 0.4 0.26 10.1 0.0 2.1 2 0 0 2 2 2 2 L-lysine 6-monooxygenase (NADPH-requiring) Lycopene_cycl PF05834.7 gi|257389150|ref|YP_003178923.1| - 0.002 17.1 1.0 0.028 13.3 0.1 2.0 1 1 1 2 2 2 1 Lycopene cyclase protein FAD_oxidored PF12831.2 gi|257389150|ref|YP_003178923.1| - 0.0062 15.6 0.0 0.0062 15.6 0.0 2.1 2 1 0 2 2 2 1 FAD dependent oxidoreductase Trp_halogenase PF04820.9 gi|257389150|ref|YP_003178923.1| - 0.019 13.5 3.0 0.89 8.1 0.6 2.1 2 0 0 2 2 2 0 Tryptophan halogenase Pyr_redox PF00070.22 gi|257389150|ref|YP_003178923.1| - 0.088 13.2 0.9 0.71 10.3 0.6 2.3 2 1 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase PP-binding PF00550.20 gi|257389150|ref|YP_003178923.1| - 0.1 12.8 0.0 0.23 11.7 0.0 1.7 1 0 0 1 1 1 0 Phosphopantetheine attachment site MCPsignal PF00015.16 gi|257389151|ref|YP_003178924.1| - 2.9e-41 141.3 82.2 3.4e-41 141.1 29.3 4.2 1 1 2 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF948 PF06103.6 gi|257389151|ref|YP_003178924.1| - 2.1e-06 27.4 34.0 0.0054 16.5 3.1 6.0 4 1 2 6 6 6 3 Bacterial protein of unknown function (DUF948) HAMP PF00672.20 gi|257389151|ref|YP_003178924.1| - 0.018 15.2 0.8 0.018 15.2 0.6 6.4 5 3 1 6 6 6 0 HAMP domain Serinc PF03348.10 gi|257389151|ref|YP_003178924.1| - 0.035 12.8 0.2 0.035 12.8 0.2 2.5 2 1 0 2 2 2 0 Serine incorporator (Serinc) DUF4131 PF13567.1 gi|257389151|ref|YP_003178924.1| - 0.039 13.3 3.0 5.1 6.4 0.0 2.7 3 0 0 3 3 3 0 Domain of unknown function (DUF4131) DUF1313 PF07011.6 gi|257389151|ref|YP_003178924.1| - 0.095 12.3 2.7 4.3 7.0 0.0 3.4 3 0 0 3 3 3 0 Protein of unknown function (DUF1313) Laminin_II PF06009.7 gi|257389151|ref|YP_003178924.1| - 0.22 11.2 55.8 0.067 12.9 5.1 5.3 2 2 3 5 5 5 0 Laminin Domain II DASH_Dam1 PF08653.5 gi|257389151|ref|YP_003178924.1| - 2.6 7.9 8.1 20 5.0 0.3 4.5 4 0 0 4 4 4 0 DASH complex subunit Dam1 Polyketide_cyc2 PF10604.4 gi|257389152|ref|YP_003178925.1| - 3.3e-10 40.2 1.2 3.6e-10 40.1 0.9 1.0 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.15 gi|257389152|ref|YP_003178925.1| - 1.6e-09 37.8 0.1 2e-09 37.5 0.1 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport ELFV_dehydrog PF00208.16 gi|257389153|ref|YP_003178926.1| - 1.3e-70 237.7 0.6 1.7e-70 237.4 0.4 1.1 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.13 gi|257389153|ref|YP_003178926.1| - 8.9e-50 167.6 0.0 1.4e-49 167.0 0.0 1.3 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.14 gi|257389153|ref|YP_003178926.1| - 0.066 12.3 0.1 0.13 11.3 0.1 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DUF4251 PF14059.1 gi|257389153|ref|YP_003178926.1| - 0.074 12.8 0.0 6.3 6.6 0.0 2.3 1 1 0 2 2 2 0 Domain of unknown function (DUF4251) HpcH_HpaI PF03328.9 gi|257389154|ref|YP_003178927.1| - 1.5e-52 177.7 2.9 2.2e-52 177.1 2.0 1.2 1 0 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family C-C_Bond_Lyase PF15617.1 gi|257389154|ref|YP_003178927.1| - 6e-11 41.7 0.4 5.5e-07 28.7 0.1 2.1 2 0 0 2 2 2 2 C-C_Bond_Lyase of the TIM-Barrel fold DZR PF12773.2 gi|257389155|ref|YP_003178928.1| - 4.3e-21 74.4 36.8 1.8e-10 40.4 6.1 3.4 2 1 2 4 4 4 3 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|257389155|ref|YP_003178928.1| - 4.5e-15 54.3 35.9 6e-06 25.2 2.6 4.7 5 0 0 5 5 5 3 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|257389155|ref|YP_003178928.1| - 1.2e-08 34.1 28.9 0.00094 18.5 1.6 4.6 5 0 0 5 5 4 3 zinc-ribbon domain FHA PF00498.21 gi|257389155|ref|YP_003178928.1| - 1.5e-07 31.4 0.0 2.9e-07 30.5 0.0 1.5 1 0 0 1 1 1 1 FHA domain UPF0547 PF10571.4 gi|257389155|ref|YP_003178928.1| - 4.8e-06 26.1 21.2 0.038 13.6 0.9 4.7 4 0 0 4 4 4 4 Uncharacterised protein family UPF0547 Zn-ribbon_8 PF09723.5 gi|257389155|ref|YP_003178928.1| - 4.6e-05 23.2 26.9 0.0031 17.4 0.8 5.6 4 1 0 5 5 5 2 Zinc ribbon domain zinc-ribbons_6 PF07191.7 gi|257389155|ref|YP_003178928.1| - 0.0022 17.7 17.0 0.4 10.5 0.5 4.1 2 1 2 4 4 4 3 zinc-ribbons PolC_DP2 PF03833.8 gi|257389155|ref|YP_003178928.1| - 0.0039 14.9 2.2 0.0039 14.9 1.5 2.2 2 1 1 3 3 3 1 DNA polymerase II large subunit DP2 Saccharop_dh PF03435.13 gi|257389155|ref|YP_003178928.1| - 0.054 12.4 0.2 5.4 5.8 0.1 2.1 1 1 1 2 2 2 0 Saccharopine dehydrogenase DUF2116 PF09889.4 gi|257389155|ref|YP_003178928.1| - 0.076 12.8 17.5 1.3 8.8 0.2 4.0 4 0 0 4 4 4 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) DUF3279 PF11682.3 gi|257389155|ref|YP_003178928.1| - 0.15 11.6 2.2 8.6 5.9 0.0 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF3279) zf-TFIIB PF13453.1 gi|257389155|ref|YP_003178928.1| - 0.67 9.1 28.6 0.034 13.3 1.6 4.8 5 0 0 5 5 5 0 Transcription factor zinc-finger zf-C2HC_2 PF13913.1 gi|257389155|ref|YP_003178928.1| - 0.7 9.6 6.4 1.6 8.4 0.0 3.7 3 0 0 3 3 3 0 zinc-finger of a C2HC-type zf-C3HC4_3 PF13920.1 gi|257389155|ref|YP_003178928.1| - 0.85 9.3 12.3 11 5.7 0.6 4.6 3 1 2 5 5 5 0 Zinc finger, C3HC4 type (RING finger) Nop10p PF04135.7 gi|257389155|ref|YP_003178928.1| - 2.1 8.1 6.2 17 5.2 0.2 3.9 3 1 0 3 3 3 0 Nucleolar RNA-binding protein, Nop10p family OrfB_Zn_ribbon PF07282.6 gi|257389155|ref|YP_003178928.1| - 2.8 7.6 21.6 7.2 6.3 0.5 4.3 2 1 2 4 4 4 0 Putative transposase DNA-binding domain zf-RING_3 PF14369.1 gi|257389155|ref|YP_003178928.1| - 5.4 7.0 32.8 1.2 9.1 0.2 6.8 4 2 2 6 6 6 0 zinc-finger Rad50_zn_hook PF04423.9 gi|257389155|ref|YP_003178928.1| - 8.4 5.9 15.9 1.4 8.4 0.0 4.2 3 1 1 4 4 4 0 Rad50 zinc hook motif PP2C_2 PF13672.1 gi|257389156|ref|YP_003178929.1| - 2.5e-12 46.6 0.8 4.5e-12 45.8 0.6 1.4 1 0 0 1 1 1 1 Protein phosphatase 2C PP2C PF00481.16 gi|257389156|ref|YP_003178929.1| - 1.2e-10 41.1 0.2 7e-10 38.7 0.1 2.2 1 1 0 1 1 1 1 Protein phosphatase 2C SpoIIE PF07228.7 gi|257389156|ref|YP_003178929.1| - 8e-08 32.2 2.3 2e-07 30.8 1.5 1.5 1 1 0 1 1 1 1 Stage II sporulation protein E (SpoIIE) Pkinase PF00069.20 gi|257389157|ref|YP_003178930.1| - 7.1e-30 104.0 0.0 8.8e-30 103.7 0.0 1.1 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.12 gi|257389157|ref|YP_003178930.1| - 5.3e-12 45.3 0.0 7.4e-12 44.8 0.0 1.2 1 0 0 1 1 1 1 Protein tyrosine kinase FHA PF00498.21 gi|257389157|ref|YP_003178930.1| - 4.4e-07 29.9 0.0 1.1e-06 28.6 0.0 1.7 1 1 0 1 1 1 1 FHA domain APH PF01636.18 gi|257389157|ref|YP_003178930.1| - 0.0016 18.2 0.2 0.027 14.1 0.1 2.1 1 1 1 2 2 2 1 Phosphotransferase enzyme family YrbL-PhoP_reg PF10707.4 gi|257389157|ref|YP_003178930.1| - 0.14 11.4 0.0 0.24 10.6 0.0 1.3 1 0 0 1 1 1 0 PhoP regulatory network protein YrbL Pox_ser-thr_kin PF05445.6 gi|257389157|ref|YP_003178930.1| - 0.26 10.0 0.1 0.38 9.4 0.0 1.1 1 0 0 1 1 1 0 Poxvirus serine/threonine protein kinase VWA_2 PF13519.1 gi|257389158|ref|YP_003178931.1| - 1.6e-22 80.3 0.2 2.9e-22 79.5 0.1 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA PF00092.23 gi|257389158|ref|YP_003178931.1| - 4.1e-19 68.9 0.0 6.3e-19 68.3 0.0 1.3 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_3 PF13768.1 gi|257389158|ref|YP_003178931.1| - 1.3e-18 67.1 0.0 2.2e-18 66.4 0.0 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.9 gi|257389158|ref|YP_003178931.1| - 1.3e-07 31.0 0.0 2.3e-07 30.1 0.0 1.4 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein DUF2201 PF09967.4 gi|257389158|ref|YP_003178931.1| - 8e-07 29.1 0.0 2.9e-06 27.2 0.0 2.0 1 0 0 1 1 1 1 VWA-like domain (DUF2201) DUF1194 PF06707.6 gi|257389158|ref|YP_003178931.1| - 0.00078 18.4 0.1 0.032 13.2 0.0 2.3 1 1 1 2 2 2 1 Protein of unknown function (DUF1194) vWA-TerF-like PF10138.4 gi|257389158|ref|YP_003178931.1| - 0.013 15.2 0.0 0.024 14.4 0.0 1.4 1 0 0 1 1 1 0 vWA found in TerF C terminus Arg_repressor_C PF02863.13 gi|257389158|ref|YP_003178931.1| - 0.099 12.1 0.1 15 5.1 0.0 2.6 2 0 0 2 2 2 0 Arginine repressor, C-terminal domain UBA PF00627.26 gi|257389160|ref|YP_003178933.1| - 0.028 14.2 0.1 0.044 13.6 0.1 1.3 1 0 0 1 1 1 0 UBA/TS-N domain GntR PF00392.16 gi|257389160|ref|YP_003178933.1| - 0.039 13.3 0.3 0.069 12.5 0.2 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family T4_deiodinase PF00837.12 gi|257389160|ref|YP_003178933.1| - 0.13 11.2 0.0 0.15 11.0 0.0 1.1 1 0 0 1 1 1 0 Iodothyronine deiodinase Polysacc_synt_C PF14667.1 gi|257389161|ref|YP_003178934.1| - 0.18 11.5 3.6 0.75 9.5 0.2 2.0 2 0 0 2 2 2 0 Polysaccharide biosynthesis C-terminal domain PAPS_reduct PF01507.14 gi|257389163|ref|YP_003178936.1| - 1.2e-16 61.0 0.0 2.6e-06 27.3 0.0 3.1 3 0 0 3 3 3 3 Phosphoadenosine phosphosulfate reductase family ATP_bind_4 PF01902.12 gi|257389163|ref|YP_003178936.1| - 0.00092 18.6 0.0 0.0084 15.4 0.0 2.1 2 0 0 2 2 2 1 ATP-binding region Fer2 PF00111.22 gi|257389165|ref|YP_003178938.1| - 6.7e-11 41.7 2.5 9.2e-11 41.3 1.7 1.2 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.1 gi|257389165|ref|YP_003178938.1| - 0.048 13.4 0.1 0.049 13.4 0.1 1.2 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Trp_halogenase PF04820.9 gi|257389166|ref|YP_003178939.1| - 1.4e-18 66.8 1.7 1.3e-15 56.9 0.0 2.1 2 0 0 2 2 2 2 Tryptophan halogenase FAD_binding_3 PF01494.14 gi|257389166|ref|YP_003178939.1| - 1.1e-13 50.9 0.9 2.5e-07 30.0 0.0 2.1 2 0 0 2 2 2 2 FAD binding domain DAO PF01266.19 gi|257389166|ref|YP_003178939.1| - 1.3e-12 47.2 7.1 1.8e-06 27.0 0.0 2.8 2 1 0 3 3 3 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|257389166|ref|YP_003178939.1| - 1.1e-08 34.3 10.5 1.1e-05 24.4 0.9 2.7 3 0 0 3 3 3 2 FAD binding domain Pyr_redox PF00070.22 gi|257389166|ref|YP_003178939.1| - 3.6e-08 33.6 0.3 0.0014 19.0 0.1 2.6 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.9 gi|257389166|ref|YP_003178939.1| - 1.4e-06 27.0 0.9 0.00074 18.0 0.2 2.3 2 0 0 2 2 2 2 HI0933-like protein Pyr_redox_3 PF13738.1 gi|257389166|ref|YP_003178939.1| - 1.5e-06 28.4 0.0 2.7e-06 27.5 0.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.2 gi|257389166|ref|YP_003178939.1| - 2e-06 27.1 6.5 2e-06 27.1 4.5 2.6 2 1 0 2 2 2 1 FAD dependent oxidoreductase Thi4 PF01946.12 gi|257389166|ref|YP_003178939.1| - 1.1e-05 24.6 0.6 2.9e-05 23.2 0.1 1.8 2 0 0 2 2 2 1 Thi4 family NAD_binding_8 PF13450.1 gi|257389166|ref|YP_003178939.1| - 1.5e-05 24.8 0.4 1.5e-05 24.8 0.3 2.6 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.9 gi|257389166|ref|YP_003178939.1| - 2.6e-05 24.1 0.6 2.6e-05 24.1 0.4 2.0 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.17 gi|257389166|ref|YP_003178939.1| - 3.5e-05 22.8 3.2 6e-05 22.0 2.2 1.5 1 1 0 1 1 1 1 Glucose inhibited division protein A 3HCDH_N PF02737.13 gi|257389166|ref|YP_003178939.1| - 0.00037 20.2 0.1 0.00065 19.3 0.1 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.11 gi|257389166|ref|YP_003178939.1| - 0.0025 17.2 0.1 0.0043 16.5 0.1 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA RPAP2_Rtr1 PF04181.8 gi|257389166|ref|YP_003178939.1| - 0.022 14.8 0.0 0.092 12.8 0.0 2.0 1 1 0 1 1 1 0 Rtr1/RPAP2 family IlvN PF07991.7 gi|257389166|ref|YP_003178939.1| - 0.031 13.6 0.0 0.05 12.9 0.0 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, catalytic domain ThiF PF00899.16 gi|257389166|ref|YP_003178939.1| - 0.037 13.8 0.0 0.072 12.9 0.0 1.5 1 0 0 1 1 1 0 ThiF family NAD_binding_9 PF13454.1 gi|257389166|ref|YP_003178939.1| - 0.041 13.6 0.5 3.3 7.4 0.0 2.6 2 0 0 2 2 2 0 FAD-NAD(P)-binding Lycopene_cycl PF05834.7 gi|257389166|ref|YP_003178939.1| - 0.044 12.6 2.9 0.92 8.3 0.1 2.6 3 0 0 3 3 3 0 Lycopene cyclase protein Peptidase_M20 PF01546.23 gi|257389167|ref|YP_003178940.1| - 3.6e-21 75.5 12.1 4.4e-20 71.9 8.4 2.1 1 1 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.9 gi|257389167|ref|YP_003178940.1| - 1.1e-13 50.9 1.1 2.3e-13 49.8 0.8 1.5 1 0 0 1 1 1 1 Peptidase dimerisation domain Beta-Casp PF10996.3 gi|257389168|ref|YP_003178941.1| - 4.9e-28 97.5 0.0 1.1e-27 96.4 0.0 1.6 1 0 0 1 1 1 1 Beta-Casp domain Lactamase_B PF00753.22 gi|257389168|ref|YP_003178941.1| - 4.1e-23 82.0 6.5 8.1e-23 81.0 4.5 1.5 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily RMMBL PF07521.7 gi|257389168|ref|YP_003178941.1| - 1.6e-14 53.3 0.0 8.1e-14 51.1 0.0 2.2 2 0 0 2 2 2 1 RNA-metabolising metallo-beta-lactamase Lactamase_B_2 PF12706.2 gi|257389168|ref|YP_003178941.1| - 4.2e-12 46.0 0.2 9.3e-12 44.8 0.1 1.6 1 0 0 1 1 1 1 Beta-lactamase superfamily domain KH_2 PF07650.12 gi|257389168|ref|YP_003178941.1| - 5.4e-08 32.2 0.2 4.8e-06 26.0 0.0 2.7 2 1 0 2 2 2 1 KH domain Lactamase_B_3 PF13483.1 gi|257389168|ref|YP_003178941.1| - 0.0017 18.1 0.0 0.0033 17.1 0.0 1.6 1 1 0 1 1 1 1 Beta-lactamase superfamily domain KH_1 PF00013.24 gi|257389168|ref|YP_003178941.1| - 0.0058 16.2 0.1 0.021 14.4 0.0 2.0 2 0 0 2 2 2 1 KH domain KH_4 PF13083.1 gi|257389168|ref|YP_003178941.1| - 0.14 11.7 0.0 0.31 10.6 0.0 1.5 1 0 0 1 1 1 0 KH domain PTS-HPr PF00381.14 gi|257389169|ref|YP_003178942.1| - 0.084 12.7 0.0 0.15 11.9 0.0 1.4 1 0 0 1 1 1 0 PTS HPr component phosphorylation site HEM4 PF02602.10 gi|257389170|ref|YP_003178943.1| - 0.031 13.5 0.0 0.05 12.8 0.0 1.4 1 0 0 1 1 1 0 Uroporphyrinogen-III synthase HemD HGTP_anticodon PF03129.15 gi|257389171|ref|YP_003178944.1| - 5.2e-21 74.4 0.0 1.1e-20 73.4 0.0 1.5 1 0 0 1 1 1 1 Anticodon binding domain ProRS-C_1 PF09180.6 gi|257389171|ref|YP_003178944.1| - 4.7e-20 71.2 1.0 1.6e-19 69.5 0.7 2.0 1 0 0 1 1 1 1 Prolyl-tRNA synthetase, C-terminal tRNA-synt_2b PF00587.20 gi|257389171|ref|YP_003178944.1| - 1e-16 61.0 0.1 2.2e-16 59.9 0.1 1.5 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) DUF177 PF02620.12 gi|257389171|ref|YP_003178944.1| - 0.063 13.3 2.4 0.3 11.1 0.4 2.7 3 0 0 3 3 3 0 Uncharacterized ACR, COG1399 Beta_helix PF13229.1 gi|257389172|ref|YP_003178945.1| - 1.6e-12 47.4 4.3 3e-12 46.5 3.0 1.4 1 0 0 1 1 1 1 Right handed beta helix region NosD PF05048.8 gi|257389172|ref|YP_003178945.1| - 5.3e-08 32.3 0.3 8.4e-08 31.6 0.2 1.2 1 0 0 1 1 1 1 Periplasmic copper-binding protein (NosD) FHA PF00498.21 gi|257389172|ref|YP_003178945.1| - 0.00016 21.6 0.0 0.00035 20.6 0.0 1.6 1 0 0 1 1 1 1 FHA domain DZR PF12773.2 gi|257389172|ref|YP_003178945.1| - 0.0016 18.2 0.9 0.0032 17.2 0.6 1.4 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.1 gi|257389172|ref|YP_003178945.1| - 0.004 16.3 1.6 0.0077 15.4 1.1 1.4 1 0 0 1 1 1 1 zinc-ribbon domain Glyco_hydro_28 PF00295.12 gi|257389172|ref|YP_003178945.1| - 0.004 16.1 4.8 0.17 10.7 0.4 2.3 1 1 1 2 2 2 2 Glycosyl hydrolases family 28 zinc_ribbon_2 PF13240.1 gi|257389172|ref|YP_003178945.1| - 0.0058 16.0 3.6 0.011 15.2 2.5 1.5 1 0 0 1 1 1 1 zinc-ribbon domain zf-C2HC5 PF06221.8 gi|257389172|ref|YP_003178945.1| - 0.013 15.2 0.2 0.023 14.4 0.2 1.3 1 0 0 1 1 1 0 Putative zinc finger motif, C2HC5-type UPF0547 PF10571.4 gi|257389172|ref|YP_003178945.1| - 0.048 13.3 2.2 0.092 12.4 1.5 1.4 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 zf-NADH-PPase PF09297.6 gi|257389172|ref|YP_003178945.1| - 0.089 12.3 0.1 0.089 12.3 0.1 2.1 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Nudix_N_2 PF14803.1 gi|257389172|ref|YP_003178945.1| - 0.59 9.8 3.9 0.35 10.5 0.2 2.4 2 0 0 2 2 2 0 Nudix N-terminal ELFV_dehydrog PF00208.16 gi|257389173|ref|YP_003178946.1| - 5e-71 239.1 1.3 6.8e-71 238.6 0.9 1.2 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.13 gi|257389173|ref|YP_003178946.1| - 1.3e-50 170.3 0.0 1.9e-50 169.8 0.0 1.3 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.14 gi|257389173|ref|YP_003178946.1| - 0.00032 19.9 1.6 0.0017 17.5 0.1 2.2 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.16 gi|257389173|ref|YP_003178946.1| - 0.028 13.9 0.2 0.068 12.7 0.1 1.6 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain AdoHcyase_NAD PF00670.16 gi|257389173|ref|YP_003178946.1| - 0.075 12.8 0.3 0.13 12.1 0.2 1.4 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Glu_synthase PF01645.12 gi|257389174|ref|YP_003178947.1| - 6.3e-150 499.1 0.6 3.3e-148 493.4 0.2 2.2 2 0 0 2 2 2 1 Conserved region in glutamate synthase GATase_2 PF00310.16 gi|257389174|ref|YP_003178947.1| - 3.4e-124 414.1 0.0 7.8e-124 413.0 0.0 1.6 2 0 0 2 2 2 1 Glutamine amidotransferases class-II Glu_syn_central PF04898.9 gi|257389174|ref|YP_003178947.1| - 2.1e-108 362.0 0.0 3.2e-108 361.3 0.0 1.3 1 0 0 1 1 1 1 Glutamate synthase central domain GXGXG PF01493.14 gi|257389174|ref|YP_003178947.1| - 5.9e-60 201.7 10.9 9.9e-60 201.0 7.5 1.3 1 0 0 1 1 1 1 GXGXG motif DUF4250 PF14056.1 gi|257389174|ref|YP_003178947.1| - 0.031 13.9 0.0 0.17 11.6 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4250) GATase_6 PF13522.1 gi|257389174|ref|YP_003178947.1| - 0.047 13.6 0.3 0.95 9.4 0.0 3.1 4 0 0 4 4 4 0 Glutamine amidotransferase domain FMN_dh PF01070.13 gi|257389174|ref|YP_003178947.1| - 0.064 12.0 6.5 0.048 12.4 1.3 2.6 3 0 0 3 3 3 0 FMN-dependent dehydrogenase Fimbrial_CS1 PF04449.7 gi|257389174|ref|YP_003178947.1| - 0.14 12.2 0.0 0.3 11.1 0.0 1.5 1 0 0 1 1 1 0 CS1 type fimbrial major subunit Epimerase PF01370.16 gi|257389175|ref|YP_003178948.1| - 1.6e-31 109.5 0.4 2.1e-30 105.8 0.3 2.0 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|257389175|ref|YP_003178948.1| - 1e-10 41.0 0.1 0.00016 20.7 0.0 2.0 2 0 0 2 2 2 2 RmlD substrate binding domain NAD_binding_10 PF13460.1 gi|257389175|ref|YP_003178948.1| - 1e-10 41.9 0.1 1.6e-10 41.3 0.1 1.3 1 0 0 1 1 1 1 NADH(P)-binding 3Beta_HSD PF01073.14 gi|257389175|ref|YP_003178948.1| - 0.00055 18.7 0.0 0.22 10.1 0.0 2.1 1 1 1 2 2 2 2 3-beta hydroxysteroid dehydrogenase/isomerase family adh_short PF00106.20 gi|257389175|ref|YP_003178948.1| - 0.0028 17.5 0.0 0.0098 15.8 0.0 1.9 1 1 0 1 1 1 1 short chain dehydrogenase NmrA PF05368.8 gi|257389175|ref|YP_003178948.1| - 0.02 14.1 0.0 0.075 12.2 0.0 1.8 2 0 0 2 2 2 0 NmrA-like family DUF2786 PF10979.3 gi|257389175|ref|YP_003178948.1| - 0.19 11.4 0.8 0.35 10.5 0.1 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2786) zf-FCS PF06467.9 gi|257389176|ref|YP_003178949.1| - 0.06 12.9 2.5 0.18 11.4 1.7 1.7 1 1 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif Exo_endo_phos_2 PF14529.1 gi|257389176|ref|YP_003178949.1| - 0.096 12.2 0.1 0.096 12.2 0.1 1.0 1 0 0 1 1 1 0 Endonuclease-reverse transcriptase DUF2768 PF10966.3 gi|257389177|ref|YP_003178950.1| - 0.1 12.7 0.1 0.1 12.7 0.0 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF2768) Fe-ADH_2 PF13685.1 gi|257389178|ref|YP_003178951.1| - 1.8e-61 207.6 2.0 2.2e-61 207.3 1.4 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.14 gi|257389178|ref|YP_003178951.1| - 4.8e-20 71.5 6.9 1.2e-19 70.2 4.8 1.5 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.15 gi|257389178|ref|YP_003178951.1| - 1.7e-10 40.2 0.1 4.3e-10 38.9 0.1 1.6 1 1 0 1 1 1 1 3-dehydroquinate synthase Peptidase_S9 PF00326.16 gi|257389180|ref|YP_003178953.1| - 1.1e-49 168.5 0.0 2e-49 167.7 0.0 1.4 1 0 0 1 1 1 1 Prolyl oligopeptidase family Abhydrolase_5 PF12695.2 gi|257389180|ref|YP_003178953.1| - 1.3e-11 44.4 0.0 2.4e-11 43.5 0.0 1.5 1 0 0 1 1 1 1 Alpha/beta hydrolase family DLH PF01738.13 gi|257389180|ref|YP_003178953.1| - 2e-10 40.3 0.0 6.6e-08 32.0 0.0 2.1 2 0 0 2 2 2 2 Dienelactone hydrolase family Abhydrolase_6 PF12697.2 gi|257389180|ref|YP_003178953.1| - 1.2e-09 38.4 3.0 8.1e-09 35.6 2.1 2.1 1 1 0 1 1 1 1 Alpha/beta hydrolase family Peptidase_S15 PF02129.13 gi|257389180|ref|YP_003178953.1| - 2.9e-09 36.7 0.0 2e-06 27.4 0.0 2.2 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) AXE1 PF05448.7 gi|257389180|ref|YP_003178953.1| - 1.4e-06 27.0 0.0 0.00023 19.8 0.0 2.1 1 1 0 1 1 1 1 Acetyl xylan esterase (AXE1) Abhydrolase_3 PF07859.8 gi|257389180|ref|YP_003178953.1| - 1.5e-05 24.7 0.1 0.00042 19.9 0.1 2.2 1 1 0 1 1 1 1 alpha/beta hydrolase fold PD40 PF07676.7 gi|257389180|ref|YP_003178953.1| - 5.7e-05 22.6 0.4 5.7e-05 22.6 0.3 4.5 5 0 0 5 5 5 1 WD40-like Beta Propeller Repeat Abhydrolase_1 PF00561.15 gi|257389180|ref|YP_003178953.1| - 0.00013 21.6 0.1 0.45 10.0 0.0 2.4 1 1 1 2 2 2 2 alpha/beta hydrolase fold DPPIV_N PF00930.16 gi|257389180|ref|YP_003178953.1| - 0.00014 20.5 0.0 0.97 7.9 0.0 3.8 2 1 1 4 4 4 1 Dipeptidyl peptidase IV (DPP IV) N-terminal region Abhydrolase_4 PF08386.5 gi|257389180|ref|YP_003178953.1| - 0.00067 19.5 0.0 0.0013 18.5 0.0 1.4 1 0 0 1 1 1 1 TAP-like protein Abhydrolase_2 PF02230.11 gi|257389180|ref|YP_003178953.1| - 0.0044 16.4 0.0 0.12 11.7 0.0 2.1 2 0 0 2 2 2 1 Phospholipase/Carboxylesterase BAAT_C PF08840.6 gi|257389180|ref|YP_003178953.1| - 0.022 14.4 0.0 2.5 7.7 0.0 2.2 2 0 0 2 2 2 0 BAAT / Acyl-CoA thioester hydrolase C terminal W_rich_C PF07483.6 gi|257389180|ref|YP_003178953.1| - 0.033 13.8 0.0 0.073 12.7 0.0 1.6 1 0 0 1 1 1 0 Tryptophan-rich Synechocystis species C-terminal domain Peptidase_S28 PF05577.7 gi|257389180|ref|YP_003178953.1| - 0.21 10.1 0.0 0.3 9.6 0.0 1.1 1 0 0 1 1 1 0 Serine carboxypeptidase S28 TAT_signal PF10518.4 gi|257389181|ref|YP_003178954.1| - 0.026 14.5 2.6 0.026 14.5 1.8 2.7 3 0 0 3 3 3 0 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.4 gi|257389181|ref|YP_003178954.1| - 0.079 12.1 1.9 0.17 11.0 1.3 1.6 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Yip1 PF04893.12 gi|257389182|ref|YP_003178955.1| - 6.8e-16 58.2 18.3 1.2e-15 57.4 12.7 1.3 1 1 0 1 1 1 1 Yip1 domain DUF1282 PF06930.7 gi|257389182|ref|YP_003178955.1| - 0.0006 19.5 4.4 0.0006 19.5 3.1 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF1282) DUF2371 PF10177.4 gi|257389182|ref|YP_003178955.1| - 0.09 12.6 1.1 0.16 11.8 0.1 1.9 2 1 0 2 2 2 0 Uncharacterised conserved protein (DUF2371) Glyco_trans_4_4 PF13579.1 gi|257389183|ref|YP_003178956.1| - 4.4e-14 52.9 7.6 4.4e-14 52.9 5.2 2.5 2 1 1 3 3 3 1 Glycosyl transferase 4-like domain Glycos_transf_1 PF00534.15 gi|257389183|ref|YP_003178956.1| - 7.8e-13 48.1 0.0 1.3e-12 47.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|257389183|ref|YP_003178956.1| - 5.7e-08 32.6 0.2 5.4e-07 29.5 0.1 2.2 1 1 0 1 1 1 1 Glycosyltransferase Family 4 MCPsignal PF00015.16 gi|257389184|ref|YP_003178957.1| - 1e-41 142.8 61.0 4.2e-41 140.8 18.9 4.1 1 1 3 4 4 4 3 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.20 gi|257389184|ref|YP_003178957.1| - 4.3e-13 49.2 7.3 1.8e-12 47.2 0.5 5.4 4 1 0 4 4 2 2 HAMP domain AAA_13 PF13166.1 gi|257389184|ref|YP_003178957.1| - 1.2e-06 27.3 21.2 0.00066 18.2 8.1 2.1 1 1 1 2 2 2 2 AAA domain DUF1664 PF07889.7 gi|257389184|ref|YP_003178957.1| - 0.011 15.5 25.3 0.88 9.3 1.4 5.1 2 2 3 5 5 5 0 Protein of unknown function (DUF1664) Syntaxin-6_N PF09177.6 gi|257389184|ref|YP_003178957.1| - 0.025 14.9 0.5 0.025 14.9 0.3 5.2 2 2 4 6 6 6 0 Syntaxin 6, N-terminal DUF2130 PF09903.4 gi|257389184|ref|YP_003178957.1| - 0.11 11.2 4.3 0.14 10.8 0.9 2.6 2 1 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2130) Fungal_trans_2 PF11951.3 gi|257389184|ref|YP_003178957.1| - 0.11 11.1 0.7 0.55 8.7 0.0 2.2 1 1 1 2 2 2 0 Fungal specific transcription factor domain DASH_Duo1 PF08651.5 gi|257389184|ref|YP_003178957.1| - 0.14 11.7 8.2 0.48 10.0 0.1 4.6 4 1 1 5 5 5 0 DASH complex subunit Duo1 AAA_27 PF13514.1 gi|257389184|ref|YP_003178957.1| - 0.34 8.5 50.1 0.031 11.9 11.6 2.1 1 1 1 2 2 2 0 AAA domain Syntaxin PF00804.20 gi|257389184|ref|YP_003178957.1| - 0.46 10.6 29.2 0.9 9.7 1.0 5.3 1 1 4 5 5 5 0 Syntaxin RmuC PF02646.11 gi|257389184|ref|YP_003178957.1| - 0.53 9.0 17.3 1.2 7.9 0.8 4.6 3 2 1 4 4 4 0 RmuC family Reo_sigmaC PF04582.7 gi|257389184|ref|YP_003178957.1| - 0.74 8.9 33.3 0.5 9.4 6.0 4.3 1 1 2 4 4 4 0 Reovirus sigma C capsid protein Fib_alpha PF08702.5 gi|257389184|ref|YP_003178957.1| - 1.6 8.8 17.2 8.5 6.4 0.3 4.5 2 2 3 5 5 5 0 Fibrinogen alpha/beta chain family Spc7 PF08317.6 gi|257389184|ref|YP_003178957.1| - 1.8 7.1 25.7 0.48 9.0 3.3 3.6 1 1 2 4 4 4 0 Spc7 kinetochore protein Laminin_II PF06009.7 gi|257389184|ref|YP_003178957.1| - 2.4 7.9 33.5 1.1 9.0 3.6 5.3 2 2 4 6 6 6 0 Laminin Domain II LXG PF04740.7 gi|257389184|ref|YP_003178957.1| - 3.5 7.3 24.8 2.3 7.9 4.5 4.2 3 2 1 4 4 4 0 LXG domain of WXG superfamily DUF948 PF06103.6 gi|257389184|ref|YP_003178957.1| - 3.8 7.4 21.0 13 5.6 0.9 5.6 4 2 1 5 5 5 0 Bacterial protein of unknown function (DUF948) Seryl_tRNA_N PF02403.17 gi|257389184|ref|YP_003178957.1| - 4.3 7.3 25.8 2.7 8.0 0.7 4.9 2 1 4 6 6 6 0 Seryl-tRNA synthetase N-terminal domain CK2S PF15011.1 gi|257389184|ref|YP_003178957.1| - 4.6 6.9 9.9 0.72 9.6 1.4 3.2 2 2 1 3 3 3 0 Casein Kinase 2 substrate GAS PF13851.1 gi|257389184|ref|YP_003178957.1| - 5.3 6.1 14.7 2.6 7.1 1.3 3.5 2 2 1 3 3 3 0 Growth-arrest specific micro-tubule binding BAR_2 PF10455.4 gi|257389184|ref|YP_003178957.1| - 7.8 5.3 19.9 0.053 12.4 3.2 2.9 2 1 1 3 3 3 0 Bin/amphiphysin/Rvs domain for vesicular trafficking SNF2_N PF00176.18 gi|257389185|ref|YP_003178958.1| - 1.6e-12 46.8 0.0 2.2e-12 46.3 0.0 1.2 1 0 0 1 1 1 1 SNF2 family N-terminal domain Helicase_C PF00271.26 gi|257389185|ref|YP_003178958.1| - 2.8e-12 46.3 0.1 5.7e-12 45.3 0.0 1.5 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.10 gi|257389185|ref|YP_003178958.1| - 5.6e-12 45.8 0.0 3.2e-11 43.3 0.0 2.0 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit DEAD PF00270.24 gi|257389185|ref|YP_003178958.1| - 7.8e-06 25.4 0.0 1.6e-05 24.4 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase AAA_19 PF13245.1 gi|257389185|ref|YP_003178958.1| - 9.1e-05 22.1 0.0 0.0009 18.9 0.0 2.5 2 0 0 2 2 2 1 Part of AAA domain AAA_22 PF13401.1 gi|257389185|ref|YP_003178958.1| - 0.00019 21.5 0.6 0.0025 17.9 0.0 3.1 3 1 0 3 3 3 1 AAA domain Helicase_C_3 PF13625.1 gi|257389185|ref|YP_003178958.1| - 0.00052 19.7 0.4 0.0073 16.0 0.1 2.5 2 0 0 2 2 2 1 Helicase conserved C-terminal domain AAA_33 PF13671.1 gi|257389185|ref|YP_003178958.1| - 0.015 15.1 0.0 0.073 12.9 0.0 2.2 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|257389185|ref|YP_003178958.1| - 0.032 14.4 0.0 0.099 12.8 0.0 1.8 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_10 PF12846.2 gi|257389185|ref|YP_003178958.1| - 0.11 11.9 1.1 2.6 7.3 0.3 2.6 2 0 0 2 2 2 0 AAA-like domain AAA_11 PF13086.1 gi|257389185|ref|YP_003178958.1| - 0.13 11.8 0.0 0.18 11.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|257389185|ref|YP_003178958.1| - 0.14 11.8 0.3 1.1 9.0 0.1 2.6 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) Pterin_bind PF00809.17 gi|257389186|ref|YP_003178959.1| - 5.1e-65 218.7 0.1 8.1e-65 218.1 0.1 1.3 1 0 0 1 1 1 1 Pterin binding enzyme Mur_ligase_M PF08245.7 gi|257389186|ref|YP_003178959.1| - 4.4e-12 46.4 0.0 8.1e-12 45.5 0.0 1.4 1 0 0 1 1 1 1 Mur ligase middle domain Mur_ligase_C PF02875.16 gi|257389186|ref|YP_003178959.1| - 6.3e-09 35.7 0.0 1.7e-08 34.3 0.0 1.8 1 0 0 1 1 1 1 Mur ligase family, glutamate ligase domain Glyco_hydro_18 PF00704.23 gi|257389187|ref|YP_003178960.1| - 1.2e-67 228.8 0.2 9.2e-67 225.9 0.1 2.2 1 1 0 1 1 1 1 Glycosyl hydrolases family 18 CBM_5_12 PF02839.9 gi|257389187|ref|YP_003178960.1| - 1.2e-28 98.4 30.6 2.2e-14 52.7 8.0 3.3 3 0 0 3 3 3 2 Carbohydrate binding domain PKD PF00801.15 gi|257389187|ref|YP_003178960.1| - 2.4e-09 36.7 4.4 2.4e-09 36.7 3.1 3.1 3 0 0 3 3 3 1 PKD domain REJ PF02010.10 gi|257389187|ref|YP_003178960.1| - 0.013 13.8 0.8 0.19 10.0 0.5 2.0 1 1 0 1 1 1 0 REJ domain CBM_5_12_2 PF14600.1 gi|257389187|ref|YP_003178960.1| - 0.077 12.6 9.0 0.57 9.8 0.5 3.0 2 0 0 2 2 2 0 Cellulose-binding domain Cadherin PF00028.12 gi|257389187|ref|YP_003178960.1| - 0.16 12.2 0.0 0.34 11.1 0.0 1.6 1 0 0 1 1 1 0 Cadherin domain SHOCT PF09851.4 gi|257389189|ref|YP_003178962.1| - 8.3e-08 31.4 2.4 1.6e-07 30.5 1.7 1.5 1 0 0 1 1 1 1 Short C-terminal domain TMEM125 PF15109.1 gi|257389189|ref|YP_003178962.1| - 0.048 13.7 5.1 0.07 13.2 3.5 1.2 1 0 0 1 1 1 0 TMEM125 protein family IncA PF04156.9 gi|257389189|ref|YP_003178962.1| - 9.4 5.7 9.3 18 4.8 6.4 1.6 1 1 0 1 1 1 0 IncA protein PAS_4 PF08448.5 gi|257389190|ref|YP_003178963.1| - 7.1e-80 264.2 20.7 2.3e-21 75.8 0.0 7.5 7 0 0 7 7 7 6 PAS fold PAS_9 PF13426.1 gi|257389190|ref|YP_003178963.1| - 3.7e-73 242.5 5.0 3.7e-20 72.2 0.0 6.2 5 0 0 5 5 5 5 PAS domain PAS PF00989.19 gi|257389190|ref|YP_003178963.1| - 5.4e-48 161.4 5.6 6.3e-22 77.4 0.0 6.4 6 0 0 6 6 6 4 PAS fold PAS_3 PF08447.6 gi|257389190|ref|YP_003178963.1| - 3.2e-44 148.9 7.8 1.4e-13 50.6 0.1 6.4 6 1 0 6 6 6 4 PAS fold GAF_2 PF13185.1 gi|257389190|ref|YP_003178963.1| - 2e-22 80.2 15.3 1e-11 45.5 0.6 5.4 6 0 0 6 6 4 3 GAF domain PAS_8 PF13188.1 gi|257389190|ref|YP_003178963.1| - 5.9e-21 73.5 0.2 7.8e-10 38.2 0.0 6.1 6 0 0 6 6 6 3 PAS domain GAF_3 PF13492.1 gi|257389190|ref|YP_003178963.1| - 1.2e-19 70.7 7.7 4.2e-07 30.1 0.0 6.2 6 0 0 6 6 6 3 GAF domain HTH_10 PF04967.7 gi|257389190|ref|YP_003178963.1| - 3.5e-15 55.3 0.0 8.2e-15 54.1 0.0 1.7 1 0 0 1 1 1 1 HTH DNA binding domain PAS_10 PF13596.1 gi|257389190|ref|YP_003178963.1| - 9.8e-14 51.5 0.1 0.00067 19.9 0.0 4.2 5 0 0 5 5 4 3 PAS domain GAF PF01590.21 gi|257389190|ref|YP_003178963.1| - 7e-12 45.7 9.5 2.6e-06 27.6 0.0 5.3 5 1 0 5 5 5 2 GAF domain HAMP PF00672.20 gi|257389190|ref|YP_003178963.1| - 3.1e-06 27.2 0.1 1.5e-05 25.0 0.1 2.2 1 0 0 1 1 1 1 HAMP domain Sigma70_r4 PF04545.11 gi|257389190|ref|YP_003178963.1| - 0.00043 19.5 0.0 0.0015 17.7 0.0 2.0 1 0 0 1 1 1 1 Sigma-70, region 4 PAS_7 PF12860.2 gi|257389190|ref|YP_003178963.1| - 0.00098 19.1 12.0 0.042 13.8 0.0 6.5 7 2 0 7 7 7 1 PAS fold HTH_5 PF01022.15 gi|257389190|ref|YP_003178963.1| - 0.0061 16.2 0.0 0.014 15.0 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.7 gi|257389190|ref|YP_003178963.1| - 0.035 13.7 0.0 0.084 12.5 0.0 1.6 1 0 0 1 1 1 0 HTH domain HTH_24 PF13412.1 gi|257389190|ref|YP_003178963.1| - 0.042 13.2 0.0 0.099 12.0 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MIF4G_like_2 PF09090.6 gi|257389190|ref|YP_003178963.1| - 0.19 10.8 1.7 3.8 6.6 0.0 3.2 3 0 0 3 3 3 0 MIF4G like Rio2_N PF09202.6 gi|257389191|ref|YP_003178964.1| - 0.11 12.5 0.0 0.12 12.4 0.0 1.5 1 1 0 1 1 1 0 Rio2, N-terminal PAS_4 PF08448.5 gi|257389193|ref|YP_003178966.1| - 1.9e-07 31.0 1.1 1.4e-06 28.2 0.0 2.2 2 1 0 2 2 2 1 PAS fold PAS_9 PF13426.1 gi|257389193|ref|YP_003178966.1| - 6.9e-06 26.3 0.0 2.4e-05 24.6 0.0 1.8 2 0 0 2 2 2 1 PAS domain Response_reg PF00072.19 gi|257389193|ref|YP_003178966.1| - 0.024 14.6 0.0 0.043 13.8 0.0 1.4 1 0 0 1 1 1 0 Response regulator receiver domain PAS PF00989.19 gi|257389193|ref|YP_003178966.1| - 0.031 14.0 0.0 0.058 13.1 0.0 1.5 1 0 0 1 1 1 0 PAS fold AICARFT_IMPCHas PF01808.13 gi|257389194|ref|YP_003178967.1| - 4.5e-84 282.2 0.0 6.3e-84 281.7 0.0 1.2 1 0 0 1 1 1 1 AICARFT/IMPCHase bienzyme Formyl_trans_N PF00551.14 gi|257389194|ref|YP_003178967.1| - 1.9e-40 138.3 0.0 3.3e-40 137.5 0.0 1.4 1 0 0 1 1 1 1 Formyl transferase DRTGG PF07085.7 gi|257389194|ref|YP_003178967.1| - 0.0057 16.2 0.0 0.029 13.9 0.0 2.3 2 0 0 2 2 2 1 DRTGG domain Lipl32 PF12103.3 gi|257389194|ref|YP_003178967.1| - 0.035 13.5 0.2 2.7 7.4 0.0 2.3 1 1 1 2 2 2 0 Surface lipoprotein of Spirochaetales order PQQ_3 PF13570.1 gi|257389195|ref|YP_003178968.1| - 7.4 6.9 6.9 2.8 8.3 0.1 3.3 2 1 1 3 3 3 0 PQQ-like domain PrsW-protease PF13367.1 gi|257389196|ref|YP_003178969.1| - 1.4e-38 132.0 12.6 1.4e-38 132.0 8.7 1.6 2 0 0 2 2 2 1 Protease prsW family SecE PF00584.15 gi|257389196|ref|YP_003178969.1| - 0.12 11.9 0.3 0.12 11.9 0.2 3.0 3 0 0 3 3 3 0 SecE/Sec61-gamma subunits of protein translocation complex Lyase_1 PF00206.15 gi|257389197|ref|YP_003178970.1| - 1.4e-45 155.8 0.0 2e-45 155.3 0.0 1.2 1 0 0 1 1 1 1 Lyase ASL_C PF08328.6 gi|257389197|ref|YP_003178970.1| - 8e-42 141.7 0.0 1.6e-41 140.7 0.0 1.5 1 0 0 1 1 1 1 Adenylosuccinate lyase C-terminal HTH_20 PF12840.2 gi|257389198|ref|YP_003178971.1| - 6.1e-06 25.9 0.1 9.5e-06 25.3 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain KdpD PF02702.12 gi|257389198|ref|YP_003178971.1| - 0.079 12.0 0.3 0.78 8.8 0.0 1.9 2 0 0 2 2 2 0 Osmosensitive K+ channel His kinase sensor domain MFS_1 PF07690.11 gi|257389200|ref|YP_003178973.1| - 5.4e-48 163.4 61.1 4.5e-24 84.8 21.2 2.6 2 1 0 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.19 gi|257389200|ref|YP_003178973.1| - 6.2e-13 48.1 26.4 4.4e-09 35.4 3.4 2.6 2 1 0 2 2 2 2 Sugar (and other) transporter MFS_3 PF05977.8 gi|257389200|ref|YP_003178973.1| - 2.1e-05 22.8 19.1 0.0026 15.9 4.8 2.6 2 1 1 3 3 3 2 Transmembrane secretion effector TRI12 PF06609.8 gi|257389200|ref|YP_003178973.1| - 0.00044 18.5 8.7 0.0078 14.4 1.8 2.3 2 0 0 2 2 2 2 Fungal trichothecene efflux pump (TRI12) MFS_1_like PF12832.2 gi|257389200|ref|YP_003178973.1| - 0.012 15.4 0.1 0.13 12.0 0.0 2.6 1 1 1 2 2 2 0 MFS_1 like family OATP PF03137.15 gi|257389200|ref|YP_003178973.1| - 0.16 9.9 9.8 0.097 10.7 1.1 2.3 2 0 0 2 2 2 0 Organic Anion Transporter Polypeptide (OATP) family DUF4212 PF13937.1 gi|257389200|ref|YP_003178973.1| - 2.1 8.3 8.7 0.89 9.5 2.5 3.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4212) Abhydrolase_6 PF12697.2 gi|257389201|ref|YP_003178974.1| - 2.1e-24 86.6 8.4 2.6e-24 86.3 5.8 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_5 PF12695.2 gi|257389201|ref|YP_003178974.1| - 1.9e-12 47.1 0.0 5.1e-12 45.7 0.0 1.7 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.15 gi|257389201|ref|YP_003178974.1| - 1e-08 35.0 1.0 6.6e-08 32.3 0.7 1.9 1 1 0 1 1 1 1 alpha/beta hydrolase fold DUF1057 PF06342.7 gi|257389201|ref|YP_003178974.1| - 0.00011 21.1 0.0 0.00018 20.4 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase of unknown function (DUF1057) SPDY PF03771.11 gi|257389201|ref|YP_003178974.1| - 0.096 12.1 5.6 0.26 10.8 0.8 2.9 1 1 1 2 2 2 0 Domain of unknown function (DUF317) HTH_10 PF04967.7 gi|257389202|ref|YP_003178975.1| - 1.3e-13 50.3 0.0 1.9e-13 49.7 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Pribosyltran PF00156.22 gi|257389203|ref|YP_003178976.1| - 1.9e-24 85.7 1.0 2.6e-24 85.3 0.2 1.6 2 0 0 2 2 2 1 Phosphoribosyl transferase domain PRTase_2 PF15609.1 gi|257389203|ref|YP_003178976.1| - 0.13 11.6 0.0 0.38 10.0 0.0 1.7 2 0 0 2 2 2 0 Phosphoribosyl transferase M20_dimer PF07687.9 gi|257389204|ref|YP_003178977.1| - 2.5e-24 85.1 0.0 6.3e-24 83.8 0.0 1.7 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M20 PF01546.23 gi|257389204|ref|YP_003178977.1| - 2.1e-23 82.8 1.7 3.2e-23 82.2 1.1 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Orn_Arg_deC_N PF02784.11 gi|257389205|ref|YP_003178978.1| - 1e-37 129.7 0.0 1.3e-37 129.3 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.17 gi|257389205|ref|YP_003178978.1| - 1.8e-18 66.3 0.0 3.1e-18 65.5 0.0 1.4 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Ferritin_2 PF13668.1 gi|257389206|ref|YP_003178979.1| - 1.5e-40 138.2 1.0 2e-40 137.9 0.7 1.1 1 0 0 1 1 1 1 Ferritin-like domain DUF2383 PF09537.5 gi|257389206|ref|YP_003178979.1| - 0.00086 19.5 0.0 0.038 14.2 0.0 2.7 2 1 0 2 2 2 1 Domain of unknown function (DUF2383) Rubrerythrin PF02915.12 gi|257389206|ref|YP_003178979.1| - 0.0019 18.5 0.5 0.1 12.9 0.3 3.0 1 1 1 2 2 2 1 Rubrerythrin Ferritin PF00210.19 gi|257389206|ref|YP_003178979.1| - 0.017 14.8 0.0 0.032 14.0 0.0 1.4 1 0 0 1 1 1 0 Ferritin-like domain TAT_signal PF10518.4 gi|257389206|ref|YP_003178979.1| - 0.047 13.6 4.6 0.2 11.7 3.2 2.1 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence THDPS_N_2 PF14805.1 gi|257389207|ref|YP_003178980.1| - 5.7e-19 67.7 0.5 8.5e-19 67.2 0.3 1.3 1 0 0 1 1 1 1 Tetrahydrodipicolinate N-succinyltransferase N-terminal Hexapep PF00132.19 gi|257389207|ref|YP_003178980.1| - 2.8e-12 45.5 6.4 2e-05 23.8 0.2 3.4 2 1 1 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|257389207|ref|YP_003178980.1| - 7.4e-06 25.4 10.7 0.00024 20.6 0.7 3.3 2 1 1 3 3 3 2 Hexapeptide repeat of succinyl-transferase DUF732 PF05305.9 gi|257389208|ref|YP_003178981.1| - 0.021 14.9 0.0 0.045 13.8 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF732) Fer4_6 PF12837.2 gi|257389208|ref|YP_003178981.1| - 2.4 8.1 5.7 0.9 9.5 1.3 2.1 2 0 0 2 2 2 0 4Fe-4S binding domain DapB_C PF05173.9 gi|257389209|ref|YP_003178982.1| - 7.8e-35 119.5 0.0 1.1e-34 119.0 0.0 1.2 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, C-terminus DapB_N PF01113.15 gi|257389209|ref|YP_003178982.1| - 3.4e-23 81.8 0.3 1.1e-22 80.2 0.2 1.8 2 1 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus NAD_binding_3 PF03447.11 gi|257389209|ref|YP_003178982.1| - 0.0015 18.9 0.3 0.0032 17.8 0.2 1.5 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain CoA_binding_2 PF13380.1 gi|257389209|ref|YP_003178982.1| - 0.0086 16.2 1.1 0.1 12.7 0.3 2.3 2 1 0 2 2 2 1 CoA binding domain Semialdhyde_dh PF01118.19 gi|257389209|ref|YP_003178982.1| - 0.033 14.5 0.1 0.061 13.6 0.0 1.5 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain NAD_binding_10 PF13460.1 gi|257389209|ref|YP_003178982.1| - 0.073 13.0 3.2 0.15 12.0 2.2 1.6 1 1 0 1 1 1 0 NADH(P)-binding DHDPS PF00701.17 gi|257389210|ref|YP_003178983.1| - 1.8e-93 312.3 0.0 2e-93 312.1 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family NMO PF03060.10 gi|257389210|ref|YP_003178983.1| - 0.0049 16.0 0.2 0.008 15.3 0.1 1.3 1 0 0 1 1 1 1 Nitronate monooxygenase Peripla_BP_1 PF00532.16 gi|257389210|ref|YP_003178983.1| - 0.057 12.6 0.0 0.1 11.7 0.0 1.4 1 0 0 1 1 1 0 Periplasmic binding proteins and sugar binding domain of LacI family Acetyltransf_6 PF13480.1 gi|257389212|ref|YP_003178985.1| - 9.3e-19 67.7 0.1 3e-18 66.1 0.2 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain FemAB PF02388.11 gi|257389212|ref|YP_003178985.1| - 1.6e-06 27.0 0.1 0.0011 17.7 0.0 2.1 1 1 1 2 2 2 2 FemAB family DUF3640 PF12342.3 gi|257389212|ref|YP_003178985.1| - 0.27 10.8 1.1 0.47 10.0 0.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3640) Glyco_hydro_3 PF00933.16 gi|257389213|ref|YP_003178986.1| - 1.4e-78 263.9 0.0 1.9e-78 263.5 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain Bmp PF02608.9 gi|257389214|ref|YP_003178987.1| - 1.2e-44 152.3 5.1 1.5e-44 152.0 3.5 1.1 1 0 0 1 1 1 1 Basic membrane protein TAT_signal PF10518.4 gi|257389214|ref|YP_003178987.1| - 0.00056 19.6 0.5 0.00056 19.6 0.4 2.5 3 0 0 3 3 3 1 TAT (twin-arginine translocation) pathway signal sequence ABC_tran PF00005.22 gi|257389215|ref|YP_003178988.1| - 9e-46 155.5 0.0 3.9e-29 101.6 0.0 2.3 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.1 gi|257389215|ref|YP_003178988.1| - 1.5e-11 44.8 0.0 5.4e-05 23.2 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|257389215|ref|YP_003178988.1| - 0.0015 18.0 0.4 0.0074 15.7 0.0 2.3 2 0 0 2 2 2 1 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|257389215|ref|YP_003178988.1| - 0.011 15.1 0.0 0.032 13.6 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.1 gi|257389215|ref|YP_003178988.1| - 0.012 15.9 0.0 0.022 15.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.1 gi|257389215|ref|YP_003178988.1| - 0.031 13.3 0.0 0.33 9.9 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain DUF258 PF03193.11 gi|257389215|ref|YP_003178988.1| - 0.037 13.1 0.1 0.2 10.8 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function, DUF258 SMC_N PF02463.14 gi|257389215|ref|YP_003178988.1| - 0.044 13.0 0.1 0.83 8.8 0.0 2.5 2 1 1 3 3 3 0 RecF/RecN/SMC N terminal domain UPF0079 PF02367.12 gi|257389215|ref|YP_003178988.1| - 0.072 12.7 0.4 0.15 11.6 0.0 1.7 2 0 0 2 2 2 0 Uncharacterised P-loop hydrolase UPF0079 Bac_DnaA PF00308.13 gi|257389215|ref|YP_003178988.1| - 0.1 12.2 0.4 0.26 10.8 0.0 1.8 2 0 0 2 2 2 0 Bacterial dnaA protein AAA_22 PF13401.1 gi|257389215|ref|YP_003178988.1| - 0.14 12.3 0.3 0.98 9.5 0.0 2.3 3 0 0 3 3 3 0 AAA domain BPD_transp_2 PF02653.11 gi|257389216|ref|YP_003178989.1| - 1.9e-45 154.9 35.1 1.9e-45 154.9 24.4 2.0 2 0 0 2 2 2 2 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.11 gi|257389217|ref|YP_003178990.1| - 4.1e-39 134.1 37.2 4.1e-39 134.1 25.8 1.8 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component NYN PF01936.13 gi|257389218|ref|YP_003178991.1| - 4.1e-36 124.4 0.1 5e-36 124.1 0.0 1.0 1 0 0 1 1 1 1 NYN domain CbbQ_C PF08406.5 gi|257389218|ref|YP_003178991.1| - 0.014 15.4 0.0 0.088 12.8 0.0 2.1 2 0 0 2 2 2 0 CbbQ/NirQ/NorQ C-terminal Clathrin PF00637.15 gi|257389218|ref|YP_003178991.1| - 0.024 14.2 0.0 0.042 13.4 0.0 1.3 1 0 0 1 1 1 0 Region in Clathrin and VPS DUF2474 PF10617.4 gi|257389220|ref|YP_003178993.1| - 0.018 14.6 2.2 0.029 13.9 1.5 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2474) MFS_1 PF07690.11 gi|257389220|ref|YP_003178993.1| - 0.16 10.6 5.3 0.19 10.4 3.7 1.0 1 0 0 1 1 1 0 Major Facilitator Superfamily TGT_C2 PF14810.1 gi|257389221|ref|YP_003178994.1| - 7.2e-22 77.0 0.1 1.3e-21 76.2 0.1 1.4 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.15 gi|257389221|ref|YP_003178994.1| - 2.6e-16 59.1 0.1 3.5e-16 58.6 0.1 1.2 1 0 0 1 1 1 1 PUA domain Antitoxin-MazE PF04014.13 gi|257389221|ref|YP_003178994.1| - 0.078 12.7 0.4 0.8 9.5 0.0 2.3 2 0 0 2 2 2 0 Antidote-toxin recognition MazE NAC PF01849.13 gi|257389222|ref|YP_003178995.1| - 2.8e-19 68.3 0.3 4.4e-19 67.7 0.2 1.3 1 0 0 1 1 1 1 NAC domain UBA PF00627.26 gi|257389222|ref|YP_003178995.1| - 3e-06 26.8 6.9 1e-05 25.1 0.2 2.8 3 0 0 3 3 3 1 UBA/TS-N domain UBA_4 PF14555.1 gi|257389222|ref|YP_003178995.1| - 0.0056 16.1 0.1 0.012 15.1 0.1 1.6 1 0 0 1 1 1 1 UBA-like domain CUE PF02845.11 gi|257389222|ref|YP_003178995.1| - 0.075 12.5 0.0 0.15 11.5 0.0 1.5 1 0 0 1 1 1 0 CUE domain DUF4355 PF14265.1 gi|257389222|ref|YP_003178995.1| - 0.15 12.0 1.3 0.29 11.0 0.1 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4355) Methyltransf_18 PF12847.2 gi|257389223|ref|YP_003178996.1| - 1.9e-17 63.8 0.3 3.3e-17 63.0 0.0 1.5 2 0 0 2 2 1 1 Methyltransferase domain GCD14 PF08704.5 gi|257389223|ref|YP_003178996.1| - 3.4e-17 62.7 0.0 1.1e-13 51.2 0.0 2.0 1 1 1 2 2 2 2 tRNA methyltransferase complex GCD14 subunit Methyltransf_26 PF13659.1 gi|257389223|ref|YP_003178996.1| - 7.8e-16 58.1 2.2 5.8e-15 55.3 1.5 2.1 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|257389223|ref|YP_003178996.1| - 1.1e-11 44.5 0.0 1.4e-11 44.1 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.9 gi|257389223|ref|YP_003178996.1| - 2.6e-08 33.4 0.1 8.3e-08 31.7 0.1 1.7 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_24 PF13578.1 gi|257389223|ref|YP_003178996.1| - 1.2e-07 32.5 0.2 2.9e-07 31.2 0.1 1.6 2 0 0 2 2 1 1 Methyltransferase domain PrmA PF06325.8 gi|257389223|ref|YP_003178996.1| - 1.6e-07 30.7 0.1 2e-07 30.4 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) PCMT PF01135.14 gi|257389223|ref|YP_003178996.1| - 3.5e-07 29.9 0.1 4.5e-07 29.6 0.1 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_3 PF01596.12 gi|257389223|ref|YP_003178996.1| - 5.2e-07 28.9 0.1 7.1e-07 28.4 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase RrnaAD PF00398.15 gi|257389223|ref|YP_003178996.1| - 1e-06 27.9 0.0 1.5e-06 27.4 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_23 PF13489.1 gi|257389223|ref|YP_003178996.1| - 1.1e-06 28.4 0.0 3.7e-06 26.7 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.7 gi|257389223|ref|YP_003178996.1| - 4.8e-06 26.9 0.2 9.6e-06 26.0 0.2 1.6 1 1 0 1 1 1 1 Methyltransferase domain CMAS PF02353.15 gi|257389223|ref|YP_003178996.1| - 2.2e-05 23.6 0.0 2.8e-05 23.3 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Cons_hypoth95 PF03602.10 gi|257389223|ref|YP_003178996.1| - 0.00016 21.1 0.4 0.00036 19.9 0.1 1.6 1 1 0 2 2 2 1 Conserved hypothetical protein 95 Methyltransf_15 PF09445.5 gi|257389223|ref|YP_003178996.1| - 0.00034 20.2 0.0 0.00045 19.7 0.0 1.1 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_25 PF13649.1 gi|257389223|ref|YP_003178996.1| - 0.0004 20.7 0.0 0.00059 20.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|257389223|ref|YP_003178996.1| - 0.00073 19.1 0.1 0.0011 18.5 0.1 1.2 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_12 PF08242.7 gi|257389223|ref|YP_003178996.1| - 0.0012 19.3 0.1 0.0031 17.9 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain MetW PF07021.7 gi|257389223|ref|YP_003178996.1| - 0.0027 17.0 0.2 0.01 15.2 0.1 1.8 2 0 0 2 2 2 1 Methionine biosynthesis protein MetW Met_10 PF02475.11 gi|257389223|ref|YP_003178996.1| - 0.003 17.1 0.0 0.0038 16.8 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein 3HCDH_N PF02737.13 gi|257389223|ref|YP_003178996.1| - 0.008 15.8 0.8 0.013 15.1 0.5 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ADH_zinc_N PF00107.21 gi|257389223|ref|YP_003178996.1| - 0.0091 15.5 0.7 0.018 14.6 0.5 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ApbA PF02558.11 gi|257389223|ref|YP_003178996.1| - 0.018 14.4 0.0 0.027 13.8 0.0 1.2 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA DUF938 PF06080.7 gi|257389223|ref|YP_003178996.1| - 0.024 14.1 0.0 0.79 9.2 0.0 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF938) Glyco_transf_4 PF13439.1 gi|257389223|ref|YP_003178996.1| - 0.046 13.4 0.0 0.062 13.0 0.0 1.2 1 0 0 1 1 1 0 Glycosyltransferase Family 4 SAM_MT PF04445.8 gi|257389223|ref|YP_003178996.1| - 0.078 12.1 0.5 0.12 11.5 0.3 1.3 1 0 0 1 1 1 0 Putative SAM-dependent methyltransferase Pyr_redox PF00070.22 gi|257389223|ref|YP_003178996.1| - 0.094 13.1 0.1 0.34 11.3 0.0 1.9 1 1 1 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Spermine_synth PF01564.12 gi|257389223|ref|YP_003178996.1| - 0.17 10.7 0.1 0.22 10.4 0.0 1.1 1 0 0 1 1 1 0 Spermine/spermidine synthase Abi PF02517.11 gi|257389224|ref|YP_003178997.1| - 7.9e-13 48.3 4.8 7.9e-13 48.3 3.3 2.2 2 1 0 2 2 2 1 CAAX protease self-immunity DUF2069 PF09842.4 gi|257389224|ref|YP_003178997.1| - 0.42 10.5 3.5 0.34 10.8 0.8 2.0 2 0 0 2 2 2 0 Predicted membrane protein (DUF2069) TFIIS_C PF01096.13 gi|257389226|ref|YP_003178999.1| - 2.1e-17 62.4 5.2 2.1e-17 62.4 3.6 3.3 3 1 0 3 3 3 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.11 gi|257389226|ref|YP_003178999.1| - 3.9e-07 29.6 10.5 5.6e-07 29.1 0.2 3.1 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit DZR PF12773.2 gi|257389226|ref|YP_003178999.1| - 7.5e-06 25.6 8.4 0.0014 18.3 0.3 2.3 2 1 0 2 2 2 2 Double zinc ribbon Zn_Tnp_IS1595 PF12760.2 gi|257389226|ref|YP_003178999.1| - 6.6e-05 22.6 5.6 0.0017 18.1 0.5 2.5 2 1 0 2 2 2 1 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.7 gi|257389226|ref|YP_003178999.1| - 0.00011 21.4 9.9 0.0025 17.0 0.2 3.4 2 1 1 3 3 3 1 TFIIB zinc-binding PhnA_Zn_Ribbon PF08274.7 gi|257389226|ref|YP_003178999.1| - 0.00023 20.8 3.5 0.25 11.1 0.0 3.4 3 1 0 3 3 3 1 PhnA Zinc-Ribbon OrfB_Zn_ribbon PF07282.6 gi|257389226|ref|YP_003178999.1| - 0.00081 18.9 12.8 0.0068 16.0 1.2 2.6 2 1 0 2 2 2 2 Putative transposase DNA-binding domain Prok-RING_1 PF14446.1 gi|257389226|ref|YP_003178999.1| - 0.0019 17.8 8.4 0.0048 16.5 0.4 3.0 3 0 0 3 3 3 1 Prokaryotic RING finger family 1 DUF2387 PF09526.5 gi|257389226|ref|YP_003178999.1| - 0.002 18.0 9.1 0.0041 16.9 1.1 2.3 2 0 0 2 2 2 1 Probable metal-binding protein (DUF2387) HypA PF01155.14 gi|257389226|ref|YP_003178999.1| - 0.022 14.4 9.6 0.09 12.4 0.6 2.7 1 1 1 2 2 2 0 Hydrogenase expression/synthesis hypA family DUF2752 PF10825.3 gi|257389226|ref|YP_003178999.1| - 0.032 14.2 0.1 1.1 9.3 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2752) FYVE_2 PF02318.11 gi|257389226|ref|YP_003178999.1| - 0.051 13.4 4.4 0.49 10.3 0.2 2.2 1 1 0 2 2 2 0 FYVE-type zinc finger FdhE PF04216.7 gi|257389226|ref|YP_003178999.1| - 0.061 13.0 0.4 0.061 13.0 0.2 2.2 2 1 0 2 2 2 0 Protein involved in formate dehydrogenase formation zf-ISL3 PF14690.1 gi|257389226|ref|YP_003178999.1| - 0.062 13.3 2.8 1.9 8.5 0.0 3.5 4 0 0 4 4 4 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 RRN7 PF11781.3 gi|257389226|ref|YP_003178999.1| - 0.092 12.2 12.7 2.7 7.5 1.3 4.0 3 1 0 3 3 3 0 RNA polymerase I-specific transcription initiation factor Rrn7 zf-IS66 PF13005.2 gi|257389226|ref|YP_003178999.1| - 0.13 12.2 10.1 15 5.6 0.0 4.3 4 1 0 4 4 4 0 zinc-finger binding domain of transposase IS66 Cytochrome_C554 PF13435.1 gi|257389226|ref|YP_003178999.1| - 0.23 11.5 4.9 0.32 11.0 3.4 1.2 1 0 0 1 1 1 0 Cytochrome c554 and c-prime Rubredoxin PF00301.15 gi|257389226|ref|YP_003178999.1| - 0.23 11.3 9.8 4.8 7.1 1.4 3.9 3 1 0 3 3 3 0 Rubredoxin zf-ribbon_3 PF13248.1 gi|257389226|ref|YP_003178999.1| - 0.25 10.5 12.5 1.7 7.9 0.0 3.9 3 1 0 4 4 4 0 zinc-ribbon domain zf-C4pol PF14260.1 gi|257389226|ref|YP_003178999.1| - 0.27 11.2 1.9 3.2 7.8 0.0 2.3 1 1 1 2 2 2 0 C4-type zinc-finger of DNA polymerase delta NinF PF05810.7 gi|257389226|ref|YP_003178999.1| - 0.29 10.9 4.5 0.44 10.3 0.4 2.6 2 1 0 2 2 2 0 NinF protein Lar_restr_allev PF14354.1 gi|257389226|ref|YP_003178999.1| - 0.35 11.2 15.0 0.55 10.5 1.2 3.0 1 1 0 2 2 2 0 Restriction alleviation protein Lar Baculo_LEF5_C PF11792.3 gi|257389226|ref|YP_003178999.1| - 0.35 10.2 0.1 0.35 10.2 0.0 2.7 4 0 0 4 4 2 0 Baculoviridae late expression factor 5 C-terminal domain Nudix_N_2 PF14803.1 gi|257389226|ref|YP_003178999.1| - 0.35 10.5 13.9 7.3 6.3 0.0 3.9 3 1 0 3 3 3 0 Nudix N-terminal zf-RING_5 PF14634.1 gi|257389226|ref|YP_003178999.1| - 0.36 10.5 7.9 1.3 8.7 0.9 3.0 2 2 2 4 4 4 0 zinc-RING finger domain DUF3797 PF12677.2 gi|257389226|ref|YP_003178999.1| - 0.44 10.2 0.1 0.44 10.2 0.0 2.8 3 1 1 4 4 4 0 Domain of unknown function (DUF3797) DUF3268 PF11672.3 gi|257389226|ref|YP_003178999.1| - 0.61 10.1 4.4 0.67 10.0 0.2 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF3268) TerY-C PF15616.1 gi|257389226|ref|YP_003178999.1| - 0.85 9.5 9.3 0.059 13.2 0.8 2.1 1 1 1 2 2 2 0 TerY-C metal binding domain PHF5 PF03660.9 gi|257389226|ref|YP_003178999.1| - 1.3 9.1 4.6 2.9 7.9 0.3 2.3 1 1 1 2 2 2 0 PHF5-like protein Auto_anti-p27 PF06677.7 gi|257389226|ref|YP_003178999.1| - 1.3 8.8 14.5 0.37 10.5 0.9 2.5 3 0 0 3 3 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Ribosomal_L37ae PF01780.14 gi|257389226|ref|YP_003178999.1| - 1.4 8.8 7.9 1 9.3 0.7 2.7 1 1 0 2 2 2 0 Ribosomal L37ae protein family zinc-ribbons_6 PF07191.7 gi|257389226|ref|YP_003178999.1| - 1.6 8.5 8.3 4.8 7.0 0.2 2.9 2 1 1 3 3 3 0 zinc-ribbons zinc_ribbon_2 PF13240.1 gi|257389226|ref|YP_003178999.1| - 1.6 8.3 13.2 2.7 7.5 0.2 3.8 3 1 0 3 3 3 0 zinc-ribbon domain Elf1 PF05129.8 gi|257389226|ref|YP_003178999.1| - 1.7 8.3 7.9 19 5.0 0.5 3.1 2 1 0 2 2 2 0 Transcription elongation factor Elf1 like Terminase_GpA PF05876.7 gi|257389226|ref|YP_003178999.1| - 1.8 6.7 8.9 0.21 9.8 2.7 1.7 1 1 1 2 2 2 0 Phage terminase large subunit (GpA) A2L_zn_ribbon PF08792.5 gi|257389226|ref|YP_003178999.1| - 1.9 8.0 13.0 13 5.3 2.2 4.2 3 1 0 3 3 3 0 A2L zinc ribbon domain zf-RING_3 PF14369.1 gi|257389226|ref|YP_003178999.1| - 2.1 8.4 8.4 2 8.4 0.1 3.3 3 1 0 3 3 3 0 zinc-finger zf-UBP PF02148.14 gi|257389226|ref|YP_003178999.1| - 2.2 8.4 6.3 1.5 8.9 0.4 2.4 2 1 0 2 2 2 0 Zn-finger in ubiquitin-hydrolases and other protein Zn-ribbon_8 PF09723.5 gi|257389226|ref|YP_003178999.1| - 3 7.8 15.3 5.9 6.9 0.4 3.7 2 2 0 3 3 3 0 Zinc ribbon domain zf-RING_4 PF14570.1 gi|257389226|ref|YP_003178999.1| - 3.7 7.2 8.7 9.3 5.9 0.1 3.1 3 0 0 3 3 3 0 RING/Ubox like zinc-binding domain DUF4428 PF14471.1 gi|257389226|ref|YP_003178999.1| - 3.8 7.3 7.3 0.14 11.9 0.4 2.3 3 1 0 3 3 2 0 Domain of unknown function (DUF4428) RNHCP PF12647.2 gi|257389226|ref|YP_003178999.1| - 5.2 6.9 10.2 1.1 9.1 0.1 3.4 1 1 1 3 3 3 0 RNHCP domain zinc_ribbon_5 PF13719.1 gi|257389226|ref|YP_003178999.1| - 5.9 6.5 12.1 14 5.3 3.9 3.6 2 2 1 3 3 3 0 zinc-ribbon domain GFA PF04828.9 gi|257389226|ref|YP_003178999.1| - 6.3 6.8 11.8 17 5.4 0.1 3.7 1 1 2 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme YokU PF14122.1 gi|257389226|ref|YP_003178999.1| - 6.4 6.5 6.0 1.8 8.3 0.4 2.5 1 1 2 3 3 3 0 YokU-like protein Ogr_Delta PF04606.7 gi|257389226|ref|YP_003178999.1| - 7.1 6.3 10.1 2.4 7.9 1.8 3.1 3 1 0 3 3 3 0 Ogr/Delta-like zinc finger DUF164 PF02591.10 gi|257389226|ref|YP_003178999.1| - 7.6 6.4 7.1 89 3.0 0.0 3.8 3 1 1 4 4 4 0 Putative zinc ribbon domain zf-trcl PF13451.1 gi|257389226|ref|YP_003178999.1| - 9.9 5.8 11.6 32 4.2 0.1 4.0 4 0 0 4 4 4 0 Probable zinc-binding domain DUF21 PF01595.15 gi|257389227|ref|YP_003179000.1| - 0.21 10.8 6.7 0.11 11.7 3.1 1.6 1 1 1 2 2 2 0 Domain of unknown function DUF21 WD40_alt PF14077.1 gi|257389229|ref|YP_003179002.1| - 0.059 13.0 0.2 0.088 12.4 0.2 1.2 1 0 0 1 1 1 0 Alternative WD40 repeat motif BRI3BP PF14965.1 gi|257389229|ref|YP_003179002.1| - 0.065 12.6 0.0 0.075 12.4 0.0 1.1 1 0 0 1 1 1 0 Negative regulator of p53/TP53 Mt_ATP-synt_B PF05405.9 gi|257389229|ref|YP_003179002.1| - 0.084 12.3 0.0 0.11 12.0 0.0 1.2 1 0 0 1 1 1 0 Mitochondrial ATP synthase B chain precursor (ATP-synt_B) Packaging_FI PF14000.1 gi|257389229|ref|YP_003179002.1| - 0.099 12.8 1.5 0.13 12.4 1.0 1.2 1 0 0 1 1 1 0 DNA packaging protein FI bZIP_2 PF07716.10 gi|257389229|ref|YP_003179002.1| - 0.11 12.3 0.2 0.11 12.3 0.1 1.5 1 1 1 2 2 2 0 Basic region leucine zipper TMF_DNA_bd PF12329.3 gi|257389229|ref|YP_003179002.1| - 0.11 12.2 0.4 0.17 11.7 0.3 1.1 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding DUF3373 PF11853.3 gi|257389229|ref|YP_003179002.1| - 0.11 10.9 0.0 0.13 10.7 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3373) IncA PF04156.9 gi|257389229|ref|YP_003179002.1| - 0.13 11.8 2.3 0.22 11.0 1.6 1.4 1 1 0 1 1 1 0 IncA protein Pox_A11 PF05061.8 gi|257389229|ref|YP_003179002.1| - 0.28 10.1 1.3 0.29 10.1 0.1 1.5 2 0 0 2 2 2 0 Poxvirus A11 Protein MttA_Hcf106 PF02416.11 gi|257389229|ref|YP_003179002.1| - 1.5 7.9 3.8 14 4.9 2.6 2.1 1 1 0 1 1 1 0 mttA/Hcf106 family Tad PF13400.1 gi|257389229|ref|YP_003179002.1| - 4.4 7.4 6.0 0.26 11.3 0.5 1.7 2 0 0 2 2 2 0 Putative Flp pilus-assembly TadE/G-like IncA PF04156.9 gi|257389230|ref|YP_003179003.1| - 0.00043 19.9 0.1 0.00059 19.4 0.1 1.2 1 0 0 1 1 1 1 IncA protein BRI3BP PF14965.1 gi|257389230|ref|YP_003179003.1| - 0.00051 19.4 0.3 0.00061 19.2 0.2 1.1 1 0 0 1 1 1 1 Negative regulator of p53/TP53 MbeD_MobD PF04899.7 gi|257389230|ref|YP_003179003.1| - 0.016 15.0 2.0 0.021 14.7 1.4 1.1 1 0 0 1 1 1 0 MbeD/MobD like BLOC1_2 PF10046.4 gi|257389230|ref|YP_003179003.1| - 0.022 14.8 0.3 0.026 14.6 0.2 1.1 1 0 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 FtsL PF04999.8 gi|257389230|ref|YP_003179003.1| - 0.042 13.5 0.1 0.048 13.3 0.1 1.1 1 0 0 1 1 1 0 Cell division protein FtsL DivIC PF04977.10 gi|257389230|ref|YP_003179003.1| - 0.048 13.1 3.2 0.084 12.3 2.2 1.4 1 1 0 1 1 1 0 Septum formation initiator DUF4140 PF13600.1 gi|257389230|ref|YP_003179003.1| - 0.06 13.7 0.5 0.067 13.6 0.3 1.1 1 0 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) DUF3373 PF11853.3 gi|257389230|ref|YP_003179003.1| - 0.096 11.1 0.0 0.11 11.0 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3373) DUF3357 PF11837.3 gi|257389230|ref|YP_003179003.1| - 0.13 12.0 0.0 0.15 11.8 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3357) DUF1003 PF06210.6 gi|257389230|ref|YP_003179003.1| - 0.17 11.7 0.4 0.27 11.1 0.3 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1003) Osmo_CC PF08946.5 gi|257389230|ref|YP_003179003.1| - 0.39 10.7 2.4 0.48 10.4 1.6 1.2 1 0 0 1 1 1 0 Osmosensory transporter coiled coil PspB PF06667.7 gi|257389230|ref|YP_003179003.1| - 0.51 10.3 5.6 1.2 9.1 3.9 1.7 1 1 0 1 1 1 0 Phage shock protein B DUF650 PF04894.7 gi|257389231|ref|YP_003179004.1| - 4.2e-101 337.9 0.0 5.3e-101 337.6 0.0 1.1 1 0 0 1 1 1 1 Archaeal protein of unknown function (DUF650) DUF651 PF04895.7 gi|257389231|ref|YP_003179004.1| - 9.9e-35 118.4 0.2 8.6e-34 115.4 0.1 2.3 1 1 0 1 1 1 1 Archaeal protein of unknown function (DUF651) Bax1-I PF01027.15 gi|257389232|ref|YP_003179005.1| - 0.049 13.2 1.1 0.078 12.5 0.8 1.3 1 0 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 PhaG_MnhG_YufB PF03334.9 gi|257389232|ref|YP_003179005.1| - 0.15 12.0 8.0 4.6 7.3 0.0 3.3 2 1 2 4 4 4 0 Na+/H+ antiporter subunit DUF4401 PF14351.1 gi|257389232|ref|YP_003179005.1| - 1.4 7.8 7.6 7.6 5.4 5.4 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4401) P12 PF12669.2 gi|257389232|ref|YP_003179005.1| - 2.2 8.5 0.0 2.2 8.5 0.0 2.7 3 0 0 3 3 3 0 Virus attachment protein p12 family DUF3360 PF11840.3 gi|257389233|ref|YP_003179006.1| - 0.097 10.9 0.4 0.14 10.4 0.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3360) UVR PF02151.14 gi|257389234|ref|YP_003179007.1| - 0.029 13.8 0.1 0.054 13.0 0.1 1.4 1 0 0 1 1 1 0 UvrB/uvrC motif Abi PF02517.11 gi|257389235|ref|YP_003179008.1| - 6.7e-11 42.1 7.7 6.7e-11 42.1 5.3 2.3 2 1 0 2 2 2 1 CAAX protease self-immunity Lon_C PF05362.8 gi|257389236|ref|YP_003179009.1| - 2.7e-35 121.5 5.0 4.2e-35 120.9 3.4 1.3 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain AAA_32 PF13654.1 gi|257389236|ref|YP_003179009.1| - 1e-29 103.5 0.0 2.9e-21 75.7 0.0 2.2 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.16 gi|257389236|ref|YP_003179009.1| - 4.3e-17 61.9 0.1 5.6e-11 41.9 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.21 gi|257389236|ref|YP_003179009.1| - 7.2e-16 58.1 0.0 5.7e-09 35.6 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain MCM PF00493.18 gi|257389236|ref|YP_003179009.1| - 2.9e-12 46.0 0.8 0.0031 16.3 0.0 3.3 3 0 0 3 3 3 3 MCM2/3/5 family AAA_5 PF07728.9 gi|257389236|ref|YP_003179009.1| - 6.4e-10 38.8 0.0 0.00078 19.1 0.0 2.5 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) ChlI PF13541.1 gi|257389236|ref|YP_003179009.1| - 3e-09 36.4 0.6 6.8e-09 35.2 0.4 1.6 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase AAA PF00004.24 gi|257389236|ref|YP_003179009.1| - 6.8e-07 29.5 0.0 0.033 14.3 0.0 2.8 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) Sigma54_activ_2 PF14532.1 gi|257389236|ref|YP_003179009.1| - 3.4e-06 27.1 0.0 0.02 14.9 0.0 2.4 2 0 0 2 2 2 2 Sigma-54 interaction domain RuvB_N PF05496.7 gi|257389236|ref|YP_003179009.1| - 4.9e-05 22.4 0.1 0.0098 14.9 0.0 2.4 2 0 0 2 2 2 1 Holliday junction DNA helicase ruvB N-terminus T2SE PF00437.15 gi|257389236|ref|YP_003179009.1| - 0.00013 20.9 0.2 0.01 14.7 0.0 3.2 3 0 0 3 3 3 1 Type II/IV secretion system protein AAA_22 PF13401.1 gi|257389236|ref|YP_003179009.1| - 0.00014 22.0 0.0 0.0099 16.0 0.0 2.5 2 0 0 2 2 2 1 AAA domain TIP49 PF06068.8 gi|257389236|ref|YP_003179009.1| - 0.00022 20.0 2.2 0.02 13.6 0.1 2.6 3 0 0 3 3 3 1 TIP49 C-terminus AAA_3 PF07726.6 gi|257389236|ref|YP_003179009.1| - 0.00033 20.2 0.1 0.46 10.1 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_PrkA PF08298.6 gi|257389236|ref|YP_003179009.1| - 0.001 17.8 0.0 0.079 11.6 0.0 2.2 2 0 0 2 2 2 1 PrkA AAA domain AAA_30 PF13604.1 gi|257389236|ref|YP_003179009.1| - 0.0012 18.4 0.0 0.02 14.4 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_19 PF13245.1 gi|257389236|ref|YP_003179009.1| - 0.0016 18.1 0.0 0.0045 16.7 0.0 1.8 1 0 0 1 1 1 1 Part of AAA domain AAA_18 PF13238.1 gi|257389236|ref|YP_003179009.1| - 0.0035 17.6 0.0 0.015 15.5 0.0 2.2 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|257389236|ref|YP_003179009.1| - 0.0078 16.0 0.1 0.032 14.0 0.0 2.0 2 0 0 2 2 1 1 AAA domain PhoH PF02562.11 gi|257389236|ref|YP_003179009.1| - 0.0082 15.3 0.0 0.019 14.2 0.0 1.6 1 0 0 1 1 1 1 PhoH-like protein Zeta_toxin PF06414.7 gi|257389236|ref|YP_003179009.1| - 0.011 14.8 0.0 0.024 13.7 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin DUF815 PF05673.8 gi|257389236|ref|YP_003179009.1| - 0.014 14.3 0.0 0.029 13.2 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF815) NACHT PF05729.7 gi|257389236|ref|YP_003179009.1| - 0.015 14.9 0.0 0.029 14.0 0.0 1.5 1 0 0 1 1 1 0 NACHT domain ABC_tran PF00005.22 gi|257389236|ref|YP_003179009.1| - 0.015 15.5 0.0 0.05 13.9 0.0 1.9 2 0 0 2 2 1 0 ABC transporter FtsK_SpoIIIE PF01580.13 gi|257389236|ref|YP_003179009.1| - 0.024 14.1 0.0 0.23 10.8 0.0 2.2 2 0 0 2 2 2 0 FtsK/SpoIIIE family IstB_IS21 PF01695.12 gi|257389236|ref|YP_003179009.1| - 0.031 13.7 0.0 0.065 12.6 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein AAA_17 PF13207.1 gi|257389236|ref|YP_003179009.1| - 0.037 14.8 0.3 0.58 10.9 0.0 2.6 2 0 0 2 2 2 0 AAA domain TrwB_AAD_bind PF10412.4 gi|257389236|ref|YP_003179009.1| - 0.1 11.2 0.0 0.16 10.6 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain Parvo_NS1 PF01057.12 gi|257389236|ref|YP_003179009.1| - 0.11 11.3 0.0 0.18 10.6 0.0 1.2 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 6PF2K PF01591.13 gi|257389236|ref|YP_003179009.1| - 0.18 10.8 0.0 0.32 10.0 0.0 1.4 1 0 0 1 1 1 0 6-phosphofructo-2-kinase CTP_transf_2 PF01467.21 gi|257389237|ref|YP_003179010.1| - 1.8e-17 63.7 0.1 2.8e-17 63.2 0.0 1.3 1 0 0 1 1 1 1 Cytidylyltransferase Citrate_ly_lig PF08218.6 gi|257389237|ref|YP_003179010.1| - 0.067 12.6 0.0 0.26 10.7 0.0 1.8 2 0 0 2 2 2 0 Citrate lyase ligase C-terminal domain SAM_adeno_trans PF01887.11 gi|257389238|ref|YP_003179011.1| - 9.6e-79 264.0 0.2 1.1e-78 263.9 0.2 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase Copper-bind PF00127.15 gi|257389239|ref|YP_003179012.1| - 3e-16 59.4 0.2 6.8e-16 58.3 0.2 1.6 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family PKD PF00801.15 gi|257389239|ref|YP_003179012.1| - 0.023 14.4 2.7 0.085 12.6 1.8 2.0 1 1 0 1 1 1 0 PKD domain Cupredoxin_1 PF13473.1 gi|257389239|ref|YP_003179012.1| - 0.081 12.8 0.1 1.1 9.1 0.1 2.4 1 1 0 1 1 1 0 Cupredoxin-like domain DUF4404 PF14357.1 gi|257389239|ref|YP_003179012.1| - 1.9 8.9 0.0 1.9 8.9 0.0 4.7 3 2 3 6 6 6 0 Domain of unknown function (DUF4404) Cpn60_TCP1 PF00118.19 gi|257389240|ref|YP_003179013.1| - 8.6e-137 456.6 6.4 9.8e-137 456.4 4.4 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Amidohydro_2 PF04909.9 gi|257389241|ref|YP_003179014.1| - 4.4e-21 75.6 4.3 7.1e-21 74.9 3.0 1.3 1 1 0 1 1 1 1 Amidohydrolase Glycos_transf_2 PF00535.21 gi|257389242|ref|YP_003179015.1| - 8e-14 51.6 0.0 1.2e-13 51.0 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|257389242|ref|YP_003179015.1| - 8.6e-06 25.7 1.2 1.6e-05 24.8 0.9 1.6 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Methyltransf_11 PF08241.7 gi|257389243|ref|YP_003179016.1| - 5.5e-21 74.8 0.0 8.7e-21 74.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.1 gi|257389243|ref|YP_003179016.1| - 4.8e-17 61.9 0.0 6.6e-17 61.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.1 gi|257389243|ref|YP_003179016.1| - 2.6e-16 59.7 0.0 3.3e-16 59.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_18 PF12847.2 gi|257389243|ref|YP_003179016.1| - 8.4e-16 58.5 0.0 1.3e-15 57.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.1 gi|257389243|ref|YP_003179016.1| - 1.5e-14 54.1 0.0 2.3e-14 53.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.13 gi|257389243|ref|YP_003179016.1| - 1.7e-14 53.5 0.0 2.2e-14 53.1 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.7 gi|257389243|ref|YP_003179016.1| - 9.9e-13 48.4 0.0 1.8e-12 47.6 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_26 PF13659.1 gi|257389243|ref|YP_003179016.1| - 3e-10 40.1 0.0 4.3e-10 39.6 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain UPF0020 PF01170.13 gi|257389243|ref|YP_003179016.1| - 8.3e-07 28.7 0.0 1.5e-06 27.8 0.0 1.4 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 MTS PF05175.9 gi|257389243|ref|YP_003179016.1| - 5.4e-06 25.8 0.0 7.6e-06 25.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain MetW PF07021.7 gi|257389243|ref|YP_003179016.1| - 3.9e-05 23.1 0.0 6e-05 22.5 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_9 PF08003.6 gi|257389243|ref|YP_003179016.1| - 0.00019 20.2 0.0 0.00028 19.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) RrnaAD PF00398.15 gi|257389243|ref|YP_003179016.1| - 0.00078 18.5 0.0 0.00099 18.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase NodS PF05401.6 gi|257389243|ref|YP_003179016.1| - 0.0079 15.6 0.0 0.01 15.2 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) TehB PF03848.9 gi|257389243|ref|YP_003179016.1| - 0.022 13.9 0.0 0.029 13.5 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB Methyltransf_20 PF12147.3 gi|257389243|ref|YP_003179016.1| - 0.022 13.6 0.0 0.04 12.7 0.0 1.4 1 0 0 1 1 1 0 Putative methyltransferase Methyltransf_15 PF09445.5 gi|257389243|ref|YP_003179016.1| - 0.03 13.8 0.0 0.038 13.5 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltransf_3 PF01596.12 gi|257389243|ref|YP_003179016.1| - 0.036 13.1 0.0 0.053 12.5 0.0 1.2 1 0 0 1 1 1 0 O-methyltransferase Methyltransf_4 PF02390.12 gi|257389243|ref|YP_003179016.1| - 0.054 12.5 0.0 0.069 12.1 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase TPMT PF05724.6 gi|257389243|ref|YP_003179016.1| - 0.063 12.7 0.0 0.092 12.1 0.0 1.2 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) Methyltransf_29 PF03141.11 gi|257389243|ref|YP_003179016.1| - 0.069 11.4 0.0 0.083 11.2 0.0 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase tRNA_U5-meth_tr PF05958.6 gi|257389243|ref|YP_003179016.1| - 0.14 10.8 0.0 0.22 10.1 0.0 1.3 1 1 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase HTH_24 PF13412.1 gi|257389244|ref|YP_003179017.1| - 3.6e-05 23.0 0.0 6e-05 22.3 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.2 gi|257389244|ref|YP_003179017.1| - 0.00047 19.7 0.1 0.00067 19.2 0.1 1.4 1 1 0 1 1 1 1 MarR family MarR PF01047.17 gi|257389244|ref|YP_003179017.1| - 0.0027 17.3 0.0 0.0037 16.9 0.0 1.3 1 0 0 1 1 1 1 MarR family GntR PF00392.16 gi|257389244|ref|YP_003179017.1| - 0.0033 16.8 0.1 0.0047 16.3 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_20 PF12840.2 gi|257389244|ref|YP_003179017.1| - 0.0037 17.0 0.3 0.0081 15.9 0.1 1.6 1 1 1 2 2 2 1 Helix-turn-helix domain TFIIE_alpha PF02002.12 gi|257389244|ref|YP_003179017.1| - 0.0073 15.7 0.0 0.0088 15.5 0.0 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit TrmB PF01978.14 gi|257389244|ref|YP_003179017.1| - 0.011 15.4 0.0 0.015 15.0 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_36 PF13730.1 gi|257389244|ref|YP_003179017.1| - 0.014 15.5 0.0 0.024 14.7 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_12 PF08461.5 gi|257389244|ref|YP_003179017.1| - 0.027 14.2 0.1 0.16 11.7 0.1 2.2 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_5 PF01022.15 gi|257389244|ref|YP_003179017.1| - 0.045 13.4 0.0 0.061 12.9 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_27 PF13463.1 gi|257389244|ref|YP_003179017.1| - 0.048 13.9 0.0 0.085 13.1 0.0 1.4 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_IclR PF09339.5 gi|257389244|ref|YP_003179017.1| - 0.097 12.2 0.1 0.13 11.8 0.1 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain Lactamase_B PF00753.22 gi|257389245|ref|YP_003179018.1| - 5.2e-15 55.6 5.7 6.1e-15 55.3 3.7 1.4 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|257389245|ref|YP_003179018.1| - 0.00042 19.9 0.1 0.0006 19.4 0.1 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.1 gi|257389245|ref|YP_003179018.1| - 0.05 13.3 0.1 0.077 12.7 0.1 1.3 1 0 0 1 1 1 0 Beta-lactamase superfamily domain CxxCxxCC PF03692.10 gi|257389246|ref|YP_003179019.1| - 8e-14 51.8 1.6 3.5e-13 49.8 0.7 2.2 1 1 1 2 2 2 1 Putative zinc- or iron-chelating domain HIPIP PF01355.12 gi|257389246|ref|YP_003179019.1| - 0.057 13.5 0.2 0.057 13.5 0.1 1.8 2 0 0 2 2 2 0 High potential iron-sulfur protein TRAM PF01938.15 gi|257389247|ref|YP_003179020.1| - 6.2e-14 51.5 3.0 6.2e-14 51.5 2.1 1.8 3 0 0 3 3 3 1 TRAM domain Hexapep PF00132.19 gi|257389247|ref|YP_003179020.1| - 0.13 11.8 0.1 0.21 11.1 0.1 1.4 1 0 0 1 1 1 0 Bacterial transferase hexapeptide (six repeats) Phosphonate-bd PF12974.2 gi|257389248|ref|YP_003179021.1| - 0.073 12.4 0.0 0.09 12.1 0.0 1.1 1 0 0 1 1 1 0 ABC transporter, phosphonate, periplasmic substrate-binding protein Peptidase_M48 PF01435.13 gi|257389249|ref|YP_003179022.1| - 9.6e-14 51.4 0.0 1.5e-13 50.8 0.0 1.3 1 0 0 1 1 1 1 Peptidase family M48 MacB_PCD PF12704.2 gi|257389250|ref|YP_003179023.1| - 1.9e-34 119.2 2.4 1.9e-34 119.2 1.6 2.0 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.16 gi|257389250|ref|YP_003179023.1| - 2.6e-25 88.5 6.4 2.6e-25 88.5 4.4 2.1 2 0 0 2 2 2 1 FtsX-like permease family ABC_tran PF00005.22 gi|257389251|ref|YP_003179024.1| - 1.4e-33 116.0 0.0 1.9e-33 115.6 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|257389251|ref|YP_003179024.1| - 2.9e-09 37.2 0.1 0.00031 20.8 0.0 2.1 2 0 0 2 2 2 2 AAA domain SMC_N PF02463.14 gi|257389251|ref|YP_003179024.1| - 5.2e-05 22.5 0.0 0.15 11.2 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|257389251|ref|YP_003179024.1| - 0.00013 21.3 0.2 0.0003 20.2 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.1 gi|257389251|ref|YP_003179024.1| - 0.00025 20.4 0.2 0.0024 17.3 0.1 2.1 2 0 0 2 2 2 1 AAA domain DUF258 PF03193.11 gi|257389251|ref|YP_003179024.1| - 0.0012 18.0 0.1 0.0019 17.4 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_10 PF12846.2 gi|257389251|ref|YP_003179024.1| - 0.0029 17.0 0.7 0.0035 16.8 0.5 1.4 1 1 0 1 1 1 1 AAA-like domain AAA_16 PF13191.1 gi|257389251|ref|YP_003179024.1| - 0.0044 17.0 3.2 0.026 14.5 2.2 2.1 1 1 0 1 1 1 1 AAA ATPase domain SbcCD_C PF13558.1 gi|257389251|ref|YP_003179024.1| - 0.011 15.6 0.1 0.12 12.2 0.1 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_33 PF13671.1 gi|257389251|ref|YP_003179024.1| - 0.022 14.6 0.4 0.046 13.6 0.3 1.8 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|257389251|ref|YP_003179024.1| - 0.03 14.4 0.6 0.17 12.0 0.2 2.0 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.10 gi|257389251|ref|YP_003179024.1| - 0.047 13.3 0.3 1.8 8.2 0.1 2.2 2 0 0 2 2 2 0 NTPase AAA_30 PF13604.1 gi|257389251|ref|YP_003179024.1| - 0.059 12.9 0.7 0.32 10.5 0.1 2.0 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.1 gi|257389251|ref|YP_003179024.1| - 0.081 13.2 0.6 0.52 10.6 0.4 2.3 1 1 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|257389251|ref|YP_003179024.1| - 0.081 13.7 0.6 0.081 13.7 0.4 1.8 2 1 0 2 2 2 0 AAA domain AAA_19 PF13245.1 gi|257389251|ref|YP_003179024.1| - 0.18 11.5 4.9 0.93 9.2 0.5 2.7 2 1 0 2 2 2 0 Part of AAA domain DUF4412 PF14371.1 gi|257389252|ref|YP_003179025.1| - 0.043 14.3 1.3 0.13 12.8 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4412) DUF1214 PF06742.6 gi|257389252|ref|YP_003179025.1| - 4 7.9 7.8 12 6.4 0.2 3.0 2 2 1 3 3 3 0 Protein of unknown function (DUF1214) DUF2633 PF11119.3 gi|257389253|ref|YP_003179026.1| - 0.073 12.8 1.2 0.073 12.8 0.9 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF2633) Pox_P21 PF05313.7 gi|257389253|ref|YP_003179026.1| - 0.12 11.6 2.8 0.12 11.6 2.0 1.0 1 0 0 1 1 1 0 Poxvirus P21 membrane protein Yip1 PF04893.12 gi|257389253|ref|YP_003179026.1| - 1.4 8.4 6.4 1.5 8.3 4.4 1.0 1 0 0 1 1 1 0 Yip1 domain GHMP_kinases_N PF00288.21 gi|257389256|ref|YP_003179029.1| - 3.1e-08 33.5 2.1 7.4e-08 32.3 1.5 1.7 1 0 0 1 1 1 1 GHMP kinases N terminal domain CMD PF02627.15 gi|257389256|ref|YP_003179029.1| - 0.96 9.3 4.4 21 5.0 0.2 2.8 3 0 0 3 3 3 0 Carboxymuconolactone decarboxylase family Sugar_tr PF00083.19 gi|257389257|ref|YP_003179030.1| - 6.3e-122 407.3 27.2 7.2e-122 407.2 18.9 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.11 gi|257389257|ref|YP_003179030.1| - 1.8e-40 138.7 51.4 1.6e-34 119.2 19.1 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily TRI12 PF06609.8 gi|257389257|ref|YP_003179030.1| - 6.1e-07 28.0 3.4 6.1e-07 28.0 2.3 2.1 2 0 0 2 2 2 1 Fungal trichothecene efflux pump (TRI12) MFS_1_like PF12832.2 gi|257389257|ref|YP_003179030.1| - 0.68 9.7 6.2 2.3 8.0 0.0 3.0 3 0 0 3 3 3 0 MFS_1 like family MFS_3 PF05977.8 gi|257389257|ref|YP_003179030.1| - 4.1 5.4 24.5 0.0044 15.1 5.0 2.1 2 0 0 2 2 2 0 Transmembrane secretion effector DUF137 PF02006.11 gi|257389258|ref|YP_003179031.1| - 2.6e-71 238.6 1.5 3.1e-71 238.4 1.1 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF137 Phage_GPD PF05954.6 gi|257389258|ref|YP_003179031.1| - 0.00034 19.8 0.3 0.00034 19.8 0.2 1.6 2 0 0 2 2 2 1 Phage late control gene D protein (GPD) MCM_N PF14551.1 gi|257389258|ref|YP_003179031.1| - 0.071 13.6 0.0 0.11 13.0 0.0 1.3 1 0 0 1 1 1 0 MCM N-terminal domain DUF1522 PF07482.6 gi|257389258|ref|YP_003179031.1| - 0.098 12.8 0.3 0.2 11.7 0.2 1.5 1 0 0 1 1 1 0 Domain of Unknown Function (DUF1522) DUF2064 PF09837.4 gi|257389258|ref|YP_003179031.1| - 0.37 10.4 3.1 0.42 10.2 1.1 1.8 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2064)