# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- SBP_bac_8 PF13416.6 gi|257372909|ref|YP_003175683.1| - 7.8e-31 107.9 1.2 1e-30 107.5 1.2 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|257372909|ref|YP_003175683.1| - 9.7e-28 98.0 0.7 1.4e-27 97.5 0.7 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Secretin_N_2 PF07655.13 gi|257372909|ref|YP_003175683.1| - 0.017 15.6 1.0 0.04 14.5 1.0 1.6 1 0 0 1 1 1 0 Secretin N-terminal domain BPD_transp_1 PF00528.22 gi|257372910|ref|YP_003175684.1| - 1.8e-14 53.9 21.6 1.8e-14 53.9 21.6 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component Myc-LZ PF02344.15 gi|257372910|ref|YP_003175684.1| - 0.24 11.6 0.3 0.38 10.9 0.3 1.3 1 0 0 1 1 1 0 Myc leucine zipper domain BPD_transp_1 PF00528.22 gi|257372911|ref|YP_003175685.1| - 3.4e-19 69.3 15.1 3.4e-19 69.3 15.1 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|257372912|ref|YP_003175686.1| - 7e-31 107.6 0.0 1.2e-30 106.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|257372912|ref|YP_003175686.1| - 1.9e-08 34.5 0.0 0.0058 16.5 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system OB_MalK PF17912.1 gi|257372912|ref|YP_003175686.1| - 3.8e-08 34.0 0.0 7.4e-07 29.9 0.0 3.0 2 0 0 2 2 2 1 MalK OB fold domain TOBE_2 PF08402.10 gi|257372912|ref|YP_003175686.1| - 3e-07 30.5 0.2 1.3e-06 28.5 0.1 2.2 2 0 0 2 2 2 1 TOBE domain CysA_C_terminal PF17850.1 gi|257372912|ref|YP_003175686.1| - 3.8e-05 24.2 0.0 0.00024 21.6 0.0 2.4 2 0 0 2 2 2 1 CysA C-terminal regulatory domain SMC_N PF02463.19 gi|257372912|ref|YP_003175686.1| - 0.00027 20.4 0.0 0.0012 18.3 0.0 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|257372912|ref|YP_003175686.1| - 0.001 19.0 0.0 0.0024 17.8 0.0 1.6 2 0 0 2 2 1 1 RsgA GTPase Rad17 PF03215.15 gi|257372912|ref|YP_003175686.1| - 0.0043 17.0 0.0 0.0072 16.3 0.0 1.2 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_16 PF13191.6 gi|257372912|ref|YP_003175686.1| - 0.0047 17.3 0.0 0.006 17.0 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|257372912|ref|YP_003175686.1| - 0.0076 16.8 0.0 0.015 15.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|257372912|ref|YP_003175686.1| - 0.0099 16.2 0.2 0.019 15.2 0.2 1.6 1 1 0 1 1 1 1 AAA domain TOBE PF03459.17 gi|257372912|ref|YP_003175686.1| - 0.013 15.8 0.1 0.049 13.9 0.1 2.1 1 0 0 1 1 1 0 TOBE domain AAA_15 PF13175.6 gi|257372912|ref|YP_003175686.1| - 0.018 14.8 0.0 0.13 12.0 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain AAA PF00004.29 gi|257372912|ref|YP_003175686.1| - 0.024 15.1 0.0 0.086 13.3 0.0 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 gi|257372912|ref|YP_003175686.1| - 0.037 13.8 0.0 0.082 12.7 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain G-alpha PF00503.20 gi|257372912|ref|YP_003175686.1| - 0.079 12.1 0.0 0.11 11.6 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit AAA_30 PF13604.6 gi|257372912|ref|YP_003175686.1| - 0.1 12.3 0.0 0.2 11.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|257372912|ref|YP_003175686.1| - 0.15 12.5 0.0 1.5 9.2 0.0 2.3 2 0 0 2 2 2 0 RNA helicase AAA_33 PF13671.6 gi|257372912|ref|YP_003175686.1| - 0.18 11.9 0.2 0.29 11.3 0.2 1.6 1 1 0 1 1 1 0 AAA domain Glyco_hydro_2_C PF02836.17 gi|257372913|ref|YP_003175687.1| - 4.2e-109 364.3 0.0 5.4e-109 363.9 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 2, TIM barrel domain Bgal_small_N PF02929.17 gi|257372913|ref|YP_003175687.1| - 1.7e-71 240.7 0.0 3e-71 239.9 0.0 1.4 1 0 0 1 1 1 1 Beta galactosidase small chain Glyco_hydro_2_N PF02837.18 gi|257372913|ref|YP_003175687.1| - 9.9e-52 175.3 0.2 2e-51 174.2 0.2 1.6 1 0 0 1 1 1 1 Glycosyl hydrolases family 2, sugar binding domain DUF4981 PF16353.5 gi|257372913|ref|YP_003175687.1| - 1e-26 93.2 0.0 1.9e-25 89.1 0.0 3.2 3 1 1 4 4 4 1 Domain of unknown function(DUF4981) Glyco_hydro_2 PF00703.21 gi|257372913|ref|YP_003175687.1| - 7e-18 65.3 0.1 1.6e-17 64.1 0.1 1.7 1 0 0 1 1 1 1 Glycosyl hydrolases family 2 DUF2888 PF11135.8 gi|257372913|ref|YP_003175687.1| - 0.15 12.0 0.1 0.34 10.9 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2888) Lyase_8_N PF08124.11 gi|257372914|ref|YP_003175688.1| - 2.2e-90 302.8 0.0 3.9e-90 302.1 0.0 1.4 1 0 0 1 1 1 1 Polysaccharide lyase family 8, N terminal alpha-helical domain Lyase_8 PF02278.18 gi|257372914|ref|YP_003175688.1| - 1.5e-86 290.1 0.5 2.6e-86 289.3 0.5 1.5 1 0 0 1 1 1 1 Polysaccharide lyase family 8, super-sandwich domain Lyase_8_C PF02884.17 gi|257372914|ref|YP_003175688.1| - 2.3e-20 72.8 0.3 5.1e-20 71.7 0.3 1.6 1 0 0 1 1 1 1 Polysaccharide lyase family 8, C-terminal beta-sandwich domain LRRC37 PF15779.5 gi|257372914|ref|YP_003175688.1| - 0.055 13.8 0.0 0.14 12.5 0.0 1.6 1 0 0 1 1 1 0 Leucine-rich repeat-containing protein 37 family TAT_signal PF10518.9 gi|257372914|ref|YP_003175688.1| - 0.18 11.7 0.1 0.43 10.5 0.1 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence UPF0051 PF01458.17 gi|257372917|ref|YP_003175691.1| - 2e-69 233.6 0.3 2.7e-69 233.2 0.3 1.2 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) HTH_10 PF04967.12 gi|257372918|ref|YP_003175692.1| - 2.7e-15 55.9 0.1 5.2e-15 55.0 0.1 1.5 1 0 0 1 1 1 1 HTH DNA binding domain HTH_30 PF13556.6 gi|257372918|ref|YP_003175692.1| - 0.00015 21.5 0.1 0.00043 20.0 0.1 1.8 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain MarR_2 PF12802.7 gi|257372918|ref|YP_003175692.1| - 0.00041 20.2 0.1 0.0014 18.4 0.1 2.0 2 0 0 2 2 2 1 MarR family HTH_psq PF05225.16 gi|257372918|ref|YP_003175692.1| - 0.021 14.5 1.8 0.03 14.1 0.2 2.1 2 1 0 2 2 2 0 helix-turn-helix, Psq domain HTH_8 PF02954.19 gi|257372918|ref|YP_003175692.1| - 0.025 14.4 0.0 0.059 13.2 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family HTH_20 PF12840.7 gi|257372918|ref|YP_003175692.1| - 0.04 14.0 0.1 0.13 12.3 0.1 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.6 gi|257372918|ref|YP_003175692.1| - 0.084 12.4 0.0 0.15 11.6 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding E1-E2_ATPase PF00122.20 gi|257372919|ref|YP_003175693.1| - 8.9e-55 185.0 0.5 2.3e-54 183.6 0.5 1.8 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.26 gi|257372919|ref|YP_003175693.1| - 1.1e-40 140.2 7.1 1.1e-40 140.2 7.1 1.9 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|257372919|ref|YP_003175693.1| - 2.2e-11 44.0 0.3 2.9e-10 40.4 0.0 2.7 2 0 0 2 2 2 1 Heavy-metal-associated domain HAD PF12710.7 gi|257372919|ref|YP_003175693.1| - 0.00099 19.6 0.4 0.0045 17.4 0.4 2.2 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|257372919|ref|YP_003175693.1| - 0.0023 17.7 1.2 0.0078 16.0 1.1 1.8 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Sod_Fe_N PF00081.22 gi|257372920|ref|YP_003175694.1| - 1.2e-31 109.0 1.1 2.1e-31 108.2 1.1 1.4 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, alpha-hairpin domain Sod_Fe_C PF02777.18 gi|257372920|ref|YP_003175694.1| - 9.8e-28 96.3 0.0 1.6e-27 95.6 0.0 1.4 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, C-terminal domain Calycin_like PF13944.6 gi|257372921|ref|YP_003175695.1| - 0.23 11.8 7.6 0.46 10.8 2.8 2.4 2 0 0 2 2 2 0 Calycin-like beta-barrel domain MarR_2 PF12802.7 gi|257372923|ref|YP_003175697.1| - 2.4e-09 36.9 0.8 7.6e-09 35.3 0.3 2.2 2 0 0 2 2 2 1 MarR family MarR PF01047.22 gi|257372923|ref|YP_003175697.1| - 3e-07 30.3 0.0 6.7e-07 29.1 0.0 1.5 1 0 0 1 1 1 1 MarR family GntR PF00392.21 gi|257372923|ref|YP_003175697.1| - 7.2e-07 28.8 0.3 1.7e-06 27.6 0.3 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_24 PF13412.6 gi|257372923|ref|YP_003175697.1| - 1.3e-06 27.8 0.1 3.2e-06 26.6 0.0 1.7 1 1 1 2 2 2 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|257372923|ref|YP_003175697.1| - 1.4e-06 28.1 0.2 2.7e-06 27.2 0.2 1.5 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|257372923|ref|YP_003175697.1| - 1.4e-05 24.8 0.2 4.9e-05 23.0 0.0 1.9 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|257372923|ref|YP_003175697.1| - 9.2e-05 22.4 0.4 0.00028 20.9 0.4 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.6 gi|257372923|ref|YP_003175697.1| - 0.00013 22.4 0.1 0.00028 21.3 0.1 1.7 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_DeoR PF08220.12 gi|257372923|ref|YP_003175697.1| - 0.00027 20.6 0.1 0.00051 19.7 0.1 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|257372923|ref|YP_003175697.1| - 0.00072 19.5 0.2 0.0014 18.6 0.2 1.5 1 1 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_11 PF08279.12 gi|257372923|ref|YP_003175697.1| - 0.0017 18.3 0.1 0.0044 16.9 0.1 1.7 1 1 1 2 2 2 1 HTH domain TBPIP PF07106.13 gi|257372923|ref|YP_003175697.1| - 0.0057 16.6 0.0 0.013 15.4 0.0 1.6 2 0 0 2 2 2 1 TBPIP/Hop2 winged helix domain HTH_5 PF01022.20 gi|257372923|ref|YP_003175697.1| - 0.0057 16.5 0.0 0.01 15.7 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_23 PF13384.6 gi|257372923|ref|YP_003175697.1| - 0.0067 16.2 0.1 0.067 13.0 0.0 2.3 1 1 1 2 2 2 1 Homeodomain-like domain HTH_36 PF13730.6 gi|257372923|ref|YP_003175697.1| - 0.009 16.0 0.0 0.018 15.0 0.0 1.5 1 1 0 1 1 1 1 Helix-turn-helix domain Trp_repressor PF01371.19 gi|257372923|ref|YP_003175697.1| - 0.013 15.7 0.1 0.021 14.9 0.1 1.3 1 0 0 1 1 1 0 Trp repressor protein HTH_29 PF13551.6 gi|257372923|ref|YP_003175697.1| - 0.016 15.2 0.0 0.037 14.1 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn helix LacI PF00356.21 gi|257372923|ref|YP_003175697.1| - 0.016 14.9 0.0 0.04 13.7 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, lacI family Fe_dep_repress PF01325.19 gi|257372923|ref|YP_003175697.1| - 0.019 15.2 0.6 0.028 14.6 0.0 1.6 2 0 0 2 2 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_28 PF13518.6 gi|257372923|ref|YP_003175697.1| - 0.025 14.7 0.1 0.066 13.3 0.0 1.8 1 1 0 1 1 1 0 Helix-turn-helix domain Rrf2 PF02082.20 gi|257372923|ref|YP_003175697.1| - 0.036 14.4 0.1 0.094 13.1 0.0 1.7 2 1 0 2 2 1 0 Transcriptional regulator Phage_rep_O PF04492.13 gi|257372923|ref|YP_003175697.1| - 0.1 13.2 0.0 0.15 12.6 0.0 1.3 1 0 0 1 1 1 0 Bacteriophage replication protein O RepL PF05732.11 gi|257372923|ref|YP_003175697.1| - 0.15 11.5 0.0 0.22 10.9 0.0 1.2 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) HSP33 PF01430.19 gi|257372923|ref|YP_003175697.1| - 0.22 10.9 0.3 17 4.8 0.2 2.0 2 0 0 2 2 2 0 Hsp33 protein PALP PF00291.25 gi|257372924|ref|YP_003175698.1| - 2e-72 244.1 2.1 2.2e-72 243.9 2.1 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme HSP70 PF00012.20 gi|257372925|ref|YP_003175699.1| - 2.1e-156 521.6 7.3 7.3e-117 391.0 1.7 3.1 2 1 1 3 3 3 3 Hsp70 protein Pkinase PF00069.25 gi|257372925|ref|YP_003175699.1| - 4.7e-24 85.2 0.0 7.8e-24 84.5 0.0 1.3 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|257372925|ref|YP_003175699.1| - 3.5e-11 42.9 0.0 5.7e-11 42.2 0.0 1.3 1 0 0 1 1 1 1 Protein tyrosine kinase GrpE PF01025.19 gi|257372925|ref|YP_003175699.1| - 2.4e-10 40.4 0.0 5.1e-10 39.3 0.0 1.5 1 0 0 1 1 1 1 GrpE MreB_Mbl PF06723.13 gi|257372925|ref|YP_003175699.1| - 1.6e-08 33.8 3.8 3.1e-08 32.8 3.8 1.4 1 0 0 1 1 1 1 MreB/Mbl protein IDEAL PF08858.10 gi|257372925|ref|YP_003175699.1| - 0.12 12.1 0.1 0.28 11.0 0.1 1.6 1 0 0 1 1 1 0 IDEAL domain FGGY_C PF02782.16 gi|257372925|ref|YP_003175699.1| - 0.13 12.0 0.2 1.2 8.9 0.0 2.4 3 0 0 3 3 3 0 FGGY family of carbohydrate kinases, C-terminal domain MazE_antitoxin PF04014.18 gi|257372929|ref|YP_003175703.1| - 0.00065 19.6 0.1 0.001 18.9 0.1 1.3 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin PrlF_antitoxin PF15937.5 gi|257372929|ref|YP_003175703.1| - 0.0043 17.5 0.0 0.0053 17.2 0.0 1.2 1 0 0 1 1 1 1 prlF antitoxin for toxin YhaV_toxin PIN PF01850.21 gi|257372930|ref|YP_003175704.1| - 1.6e-16 60.9 0.2 1.8e-16 60.8 0.2 1.0 1 0 0 1 1 1 1 PIN domain bMG6 PF17962.1 gi|257372932|ref|YP_003175706.1| - 0.022 14.9 0.3 0.025 14.7 0.3 1.1 1 0 0 1 1 1 0 Bacterial macroglobulin domain 6 AAA PF00004.29 gi|257372933|ref|YP_003175707.1| - 5.7e-14 52.7 0.0 1.5e-13 51.3 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|257372933|ref|YP_003175707.1| - 2e-13 51.0 0.2 1e-12 48.8 0.0 2.3 2 1 0 2 2 2 1 AAA ATPase domain Cdc6_C PF09079.11 gi|257372933|ref|YP_003175707.1| - 1.5e-09 37.7 1.1 3.1e-09 36.7 0.1 2.1 3 0 0 3 3 3 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|257372933|ref|YP_003175707.1| - 6.2e-08 33.0 0.0 1.5e-07 31.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain DUF815 PF05673.13 gi|257372933|ref|YP_003175707.1| - 3.2e-07 29.8 0.0 6.8e-07 28.7 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF815) TniB PF05621.11 gi|257372933|ref|YP_003175707.1| - 1.8e-06 27.5 0.0 5.3e-06 26.0 0.0 1.7 2 0 0 2 2 2 1 Bacterial TniB protein ATPase_2 PF01637.18 gi|257372933|ref|YP_003175707.1| - 3.1e-05 24.0 0.0 6.1e-05 23.0 0.0 1.5 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 gi|257372933|ref|YP_003175707.1| - 0.002 17.9 0.0 0.0035 17.1 0.0 1.4 1 0 0 1 1 1 1 Sigma-54 interaction domain NACHT PF05729.12 gi|257372933|ref|YP_003175707.1| - 0.0032 17.4 0.1 0.0092 15.9 0.0 1.8 2 0 0 2 2 2 1 NACHT domain AAA_7 PF12775.7 gi|257372933|ref|YP_003175707.1| - 0.0032 17.0 0.0 0.019 14.5 0.0 2.2 3 0 0 3 3 3 1 P-loop containing dynein motor region IstB_IS21 PF01695.17 gi|257372933|ref|YP_003175707.1| - 0.0044 16.8 0.0 0.018 14.8 0.0 2.0 1 1 1 2 2 2 1 IstB-like ATP binding protein ABC_tran PF00005.27 gi|257372933|ref|YP_003175707.1| - 0.0058 17.2 0.1 0.02 15.4 0.0 2.0 1 1 1 2 2 2 1 ABC transporter AAA_23 PF13476.6 gi|257372933|ref|YP_003175707.1| - 0.0086 16.6 0.0 0.15 12.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|257372933|ref|YP_003175707.1| - 0.017 14.8 0.0 0.035 13.8 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain RNA_helicase PF00910.22 gi|257372933|ref|YP_003175707.1| - 0.02 15.3 0.0 0.056 13.8 0.0 1.8 1 0 0 1 1 1 0 RNA helicase AAA_24 PF13479.6 gi|257372933|ref|YP_003175707.1| - 0.021 14.6 0.0 0.053 13.2 0.0 1.7 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 gi|257372933|ref|YP_003175707.1| - 0.021 14.2 0.0 0.039 13.3 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_19 PF13245.6 gi|257372933|ref|YP_003175707.1| - 0.026 14.8 0.0 0.047 14.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|257372933|ref|YP_003175707.1| - 0.037 13.9 0.0 0.2 11.6 0.0 2.0 1 1 0 2 2 2 0 RsgA GTPase AAA_PrkA PF08298.11 gi|257372933|ref|YP_003175707.1| - 0.04 12.8 0.0 0.069 12.1 0.0 1.3 1 0 0 1 1 1 0 PrkA AAA domain MMR_HSR1 PF01926.23 gi|257372933|ref|YP_003175707.1| - 0.059 13.5 0.0 0.18 11.9 0.0 1.9 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_5 PF07728.14 gi|257372933|ref|YP_003175707.1| - 0.089 12.8 0.6 0.38 10.7 0.1 2.4 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) Cnd1 PF12717.7 gi|257372934|ref|YP_003175708.1| - 7.8e-36 123.6 0.0 5.3e-05 23.3 0.0 7.5 1 1 6 7 7 7 7 non-SMC mitotic condensation complex subunit 1 Pkinase PF00069.25 gi|257372934|ref|YP_003175708.1| - 2.4e-31 109.0 0.0 3.9e-31 108.4 0.0 1.3 1 0 0 1 1 1 1 Protein kinase domain HEAT_EZ PF13513.6 gi|257372934|ref|YP_003175708.1| - 3e-22 78.7 0.3 0.062 13.8 0.0 10.2 5 4 6 11 11 11 5 HEAT-like repeat Pkinase_Tyr PF07714.17 gi|257372934|ref|YP_003175708.1| - 9.5e-22 77.5 0.0 1.4e-21 76.9 0.0 1.2 1 0 0 1 1 1 1 Protein tyrosine kinase HEAT_2 PF13646.6 gi|257372934|ref|YP_003175708.1| - 5.6e-15 55.5 16.1 0.0025 18.2 0.2 7.1 2 1 7 9 9 9 8 HEAT repeats Adaptin_N PF01602.20 gi|257372934|ref|YP_003175708.1| - 6.6e-13 48.1 0.0 0.0013 17.4 0.0 4.0 2 1 1 3 3 3 3 Adaptin N terminal region HEAT PF02985.22 gi|257372934|ref|YP_003175708.1| - 5.4e-12 44.9 0.3 46 4.7 0.0 11.4 13 0 0 13 13 13 0 HEAT repeat CLASP_N PF12348.8 gi|257372934|ref|YP_003175708.1| - 6.1e-07 29.2 0.3 2.9 7.4 0.0 5.7 3 2 2 6 6 6 1 CLASP N terminal DNA_alkylation PF08713.11 gi|257372934|ref|YP_003175708.1| - 2.2e-05 24.3 0.0 9.3 5.9 0.0 5.9 5 2 2 7 7 7 2 DNA alkylation repair enzyme DUF3535 PF12054.8 gi|257372934|ref|YP_003175708.1| - 0.00032 20.1 0.0 3 7.0 0.0 4.6 3 2 0 4 4 4 1 Domain of unknown function (DUF3535) HisKA_3 PF07730.13 gi|257372934|ref|YP_003175708.1| - 0.015 15.8 12.6 22 5.7 0.0 8.3 3 2 6 10 10 10 0 Histidine kinase DUF2384 PF09722.10 gi|257372934|ref|YP_003175708.1| - 0.063 13.3 3.0 66 3.7 0.0 6.0 6 0 0 6 6 6 0 Protein of unknown function (DUF2384) AMA-1 PF02430.15 gi|257372934|ref|YP_003175708.1| - 0.09 11.7 0.1 12 4.7 0.0 2.8 2 1 1 3 3 3 0 Apical membrane antigen 1 Kdo PF06293.14 gi|257372934|ref|YP_003175708.1| - 0.12 11.7 0.0 0.24 10.7 0.0 1.4 1 0 0 1 1 1 0 Lipopolysaccharide kinase (Kdo/WaaP) family Anticodon_1 PF08264.13 gi|257372934|ref|YP_003175708.1| - 0.46 10.4 3.9 47 3.9 0.0 5.2 7 1 1 8 8 7 0 Anticodon-binding domain of tRNA Transcrip_act PF04949.13 gi|257372934|ref|YP_003175708.1| - 0.52 10.2 2.4 6.8 6.6 0.2 2.9 1 1 1 2 2 2 0 Transcriptional activator Barstar PF01337.18 gi|257372934|ref|YP_003175708.1| - 4.9 7.3 13.7 1.7 8.7 1.3 4.7 3 1 1 5 5 5 0 Barstar (barnase inhibitor) PQQ_3 PF13570.6 gi|257372935|ref|YP_003175709.1| - 1.3e-39 133.7 46.2 1.6e-08 34.7 1.0 9.4 9 0 0 9 9 9 6 PQQ-like domain PQQ_2 PF13360.6 gi|257372935|ref|YP_003175709.1| - 2.1e-31 109.4 15.8 5.1e-18 65.5 10.9 3.5 1 1 0 2 2 2 2 PQQ-like domain PQQ PF01011.21 gi|257372935|ref|YP_003175709.1| - 1.7e-29 100.3 12.7 3.6e-09 36.1 0.2 6.7 7 0 0 7 7 7 5 PQQ enzyme repeat Pkinase PF00069.25 gi|257372935|ref|YP_003175709.1| - 3.6e-29 101.9 0.0 5.4e-29 101.4 0.0 1.1 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|257372935|ref|YP_003175709.1| - 2.9e-15 56.2 0.0 4.4e-15 55.7 0.0 1.1 1 0 0 1 1 1 1 Protein tyrosine kinase APH PF01636.23 gi|257372935|ref|YP_003175709.1| - 0.062 13.2 5.9 0.39 10.6 2.1 3.0 2 1 1 3 3 3 0 Phosphotransferase enzyme family DUF4730 PF15873.5 gi|257372935|ref|YP_003175709.1| - 0.15 12.3 0.0 0.34 11.2 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4730) AAA_5 PF07728.14 gi|257372936|ref|YP_003175710.1| - 7.6e-30 103.7 0.0 1.9e-29 102.4 0.0 1.7 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.11 gi|257372936|ref|YP_003175710.1| - 1.2e-13 51.1 0.0 1.8e-13 50.5 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 gi|257372936|ref|YP_003175710.1| - 9.5e-09 35.8 0.0 1.7e-08 34.9 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) MCM PF00493.23 gi|257372936|ref|YP_003175710.1| - 9e-06 24.9 0.0 1.6e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 MCM P-loop domain Mg_chelatase PF01078.21 gi|257372936|ref|YP_003175710.1| - 2.1e-05 24.0 0.0 0.15 11.4 0.0 2.2 1 1 0 2 2 2 2 Magnesium chelatase, subunit ChlI CbbQ_C PF08406.10 gi|257372936|ref|YP_003175710.1| - 4.6e-05 23.6 2.2 6.4e-05 23.1 0.2 2.1 2 0 0 2 2 2 1 CbbQ/NirQ/NorQ C-terminal Sigma54_activat PF00158.26 gi|257372936|ref|YP_003175710.1| - 6.6e-05 22.7 0.0 0.00017 21.3 0.0 1.7 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_30 PF13604.6 gi|257372936|ref|YP_003175710.1| - 9.6e-05 22.2 0.2 0.00026 20.7 0.1 1.7 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.17 gi|257372936|ref|YP_003175710.1| - 0.00045 20.0 0.0 0.0008 19.2 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_6 PF12774.7 gi|257372936|ref|YP_003175710.1| - 0.00059 18.9 0.0 0.0079 15.2 0.0 2.0 2 0 0 2 2 2 1 Hydrolytic ATP binding site of dynein motor region AAA_16 PF13191.6 gi|257372936|ref|YP_003175710.1| - 0.00098 19.5 0.7 0.039 14.3 0.7 2.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|257372936|ref|YP_003175710.1| - 0.0013 19.0 0.0 0.0025 18.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|257372936|ref|YP_003175710.1| - 0.003 17.7 0.0 0.0061 16.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.6 gi|257372936|ref|YP_003175710.1| - 0.063 13.3 0.0 0.12 12.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|257372936|ref|YP_003175710.1| - 0.063 12.8 0.1 0.47 10.0 0.1 2.1 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|257372936|ref|YP_003175710.1| - 0.11 12.9 0.0 0.21 12.0 0.0 1.4 1 0 0 1 1 1 0 RNA helicase AAA_18 PF13238.6 gi|257372936|ref|YP_003175710.1| - 0.13 12.8 0.0 0.32 11.6 0.0 1.8 2 0 0 2 2 1 0 AAA domain ABC_tran PF00005.27 gi|257372936|ref|YP_003175710.1| - 0.16 12.5 0.0 0.32 11.5 0.0 1.8 1 1 0 1 1 1 0 ABC transporter VWA_2 PF13519.6 gi|257372937|ref|YP_003175711.1| - 4.7e-06 27.2 0.0 1e-05 26.1 0.0 1.6 1 0 0 1 1 1 1 von Willebrand factor type A domain CobT_C PF11775.8 gi|257372937|ref|YP_003175711.1| - 0.0001 22.0 0.0 0.00027 20.7 0.0 1.7 1 0 0 1 1 1 1 Cobalamin biosynthesis protein CobT VWA domain VWA PF00092.28 gi|257372937|ref|YP_003175711.1| - 0.022 15.0 0.0 0.26 11.5 0.0 2.1 1 1 1 2 2 2 0 von Willebrand factor type A domain HEAT_2 PF13646.6 gi|257372938|ref|YP_003175712.1| - 7.4e-28 96.8 106.2 1.9e-06 28.2 1.2 15.3 9 5 5 15 15 15 10 HEAT repeats HEAT PF02985.22 gi|257372938|ref|YP_003175712.1| - 8.7e-18 62.9 51.2 0.001 19.1 0.0 15.3 16 0 0 16 16 16 7 HEAT repeat Cnd1 PF12717.7 gi|257372938|ref|YP_003175712.1| - 5.2e-16 59.1 0.0 0.0027 17.8 0.0 7.9 4 2 3 8 8 8 4 non-SMC mitotic condensation complex subunit 1 Cohesin_HEAT PF12765.7 gi|257372938|ref|YP_003175712.1| - 3.5e-14 52.8 9.7 2.6e-11 43.6 0.0 6.1 5 0 0 5 5 5 1 HEAT repeat associated with sister chromatid cohesion Adaptin_N PF01602.20 gi|257372938|ref|YP_003175712.1| - 5.3e-13 48.4 0.0 0.011 14.4 0.0 5.9 3 2 1 5 5 5 4 Adaptin N terminal region HEAT_EZ PF13513.6 gi|257372938|ref|YP_003175712.1| - 1.3e-09 38.4 75.0 6.8e-06 26.5 0.3 14.4 14 2 2 16 16 15 5 HEAT-like repeat Cnd3 PF12719.7 gi|257372938|ref|YP_003175712.1| - 0.0001 21.6 0.0 0.0005 19.3 0.0 2.2 2 0 0 2 2 2 1 Nuclear condensing complex subunits, C-term domain RTP1_C1 PF10363.9 gi|257372938|ref|YP_003175712.1| - 0.015 15.5 0.0 7.9 6.7 0.0 4.3 5 0 0 5 5 4 0 Required for nuclear transport of RNA pol II C-terminus 1 Nipped-B_C PF12830.7 gi|257372938|ref|YP_003175712.1| - 0.016 15.1 0.0 3.7 7.5 0.0 3.7 4 0 0 4 4 4 0 Sister chromatid cohesion C-terminus Arm PF00514.23 gi|257372938|ref|YP_003175712.1| - 0.35 11.0 14.6 8.2 6.6 0.0 7.4 10 0 0 10 10 10 0 Armadillo/beta-catenin-like repeat HEAT_PBS PF03130.16 gi|257372938|ref|YP_003175712.1| - 1.2 10.1 47.4 1.8 9.5 1.5 12.7 13 0 0 13 13 12 0 PBS lyase HEAT-like repeat PHO4 PF01384.20 gi|257372939|ref|YP_003175713.1| - 1e-41 143.1 18.5 1.9e-41 142.3 18.5 1.4 1 0 0 1 1 1 1 Phosphate transporter family Plant_vir_prot PF01307.17 gi|257372939|ref|YP_003175713.1| - 0.14 12.4 0.1 0.8 10.0 0.0 2.4 2 0 0 2 2 2 0 Plant viral movement protein Pkinase PF00069.25 gi|257372940|ref|YP_003175714.1| - 4.9e-24 85.1 0.0 1.2e-23 83.8 0.0 1.6 1 1 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|257372940|ref|YP_003175714.1| - 5e-16 58.8 0.0 9.1e-16 57.9 0.0 1.4 1 0 0 1 1 1 1 Protein tyrosine kinase Fer2 PF00111.27 gi|257372940|ref|YP_003175714.1| - 1.8e-11 43.8 1.5 4.5e-11 42.5 1.5 1.7 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain HrcA_DNA-bdg PF03444.15 gi|257372940|ref|YP_003175714.1| - 1.6e-07 30.8 0.0 0.0033 17.0 0.0 2.4 2 0 0 2 2 2 2 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Rrf2 PF02082.20 gi|257372940|ref|YP_003175714.1| - 1.7e-06 28.3 0.0 0.022 15.1 0.0 2.4 2 0 0 2 2 2 2 Transcriptional regulator HTH_11 PF08279.12 gi|257372940|ref|YP_003175714.1| - 9.4e-05 22.3 0.1 0.14 12.1 0.0 2.8 3 0 0 3 3 3 2 HTH domain MarR_2 PF12802.7 gi|257372940|ref|YP_003175714.1| - 0.00014 21.7 1.4 0.52 10.2 0.2 2.8 2 0 0 2 2 2 2 MarR family HTH_20 PF12840.7 gi|257372940|ref|YP_003175714.1| - 0.00027 21.0 2.1 0.022 14.8 0.1 3.1 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|257372940|ref|YP_003175714.1| - 0.00032 20.6 0.0 0.5 10.4 0.0 2.4 2 0 0 2 2 2 2 Crp-like helix-turn-helix domain Put_DNA-bind_N PF06971.13 gi|257372940|ref|YP_003175714.1| - 0.0023 17.9 0.1 0.37 10.9 0.0 2.8 2 0 0 2 2 2 1 Putative DNA-binding protein N-terminus DinB_2 PF12867.7 gi|257372940|ref|YP_003175714.1| - 0.013 16.0 0.9 0.7 10.4 0.1 2.9 2 1 1 3 3 2 0 DinB superfamily HTH_24 PF13412.6 gi|257372940|ref|YP_003175714.1| - 0.017 14.7 0.0 1.2 8.8 0.0 2.4 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|257372940|ref|YP_003175714.1| - 0.024 14.5 0.0 0.54 10.2 0.0 2.5 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB Rio2_N PF09202.11 gi|257372940|ref|YP_003175714.1| - 0.13 12.5 0.0 2.8 8.2 0.0 2.7 3 0 0 3 3 3 0 Rio2, N-terminal FliX PF10768.9 gi|257372940|ref|YP_003175714.1| - 0.19 12.2 3.0 0.46 11.0 1.1 2.3 2 0 0 2 2 2 0 Class II flagellar assembly regulator phiKZ_IP PF12699.7 gi|257372941|ref|YP_003175715.1| - 0.057 12.6 0.1 0.062 12.4 0.1 1.2 1 0 0 1 1 1 0 phiKZ-like phage internal head proteins VPS28 PF03997.12 gi|257372941|ref|YP_003175715.1| - 0.083 12.5 0.0 0.13 11.9 0.0 1.2 1 0 0 1 1 1 0 VPS28 protein AAA PF00004.29 gi|257372942|ref|YP_003175716.1| - 2e-39 135.1 0.0 4.7e-39 133.8 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|257372942|ref|YP_003175716.1| - 2.1e-06 27.6 0.0 3.9e-06 26.7 0.0 1.4 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_5 PF07728.14 gi|257372942|ref|YP_003175716.1| - 1.3e-05 25.2 0.4 0.00053 20.0 0.4 2.6 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|257372942|ref|YP_003175716.1| - 0.00018 21.9 5.5 0.078 13.3 0.1 3.2 2 1 1 3 3 3 2 AAA ATPase domain AAA_22 PF13401.6 gi|257372942|ref|YP_003175716.1| - 0.00024 21.4 0.2 0.0016 18.7 0.2 2.3 1 1 0 1 1 1 1 AAA domain AAA_2 PF07724.14 gi|257372942|ref|YP_003175716.1| - 0.00084 19.5 0.0 0.0056 16.8 0.0 2.2 1 1 0 1 1 1 1 AAA domain (Cdc48 subfamily) Mg_chelatase PF01078.21 gi|257372942|ref|YP_003175716.1| - 0.0014 18.1 0.0 0.0028 17.1 0.0 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_lid_3 PF17862.1 gi|257372942|ref|YP_003175716.1| - 0.0015 18.3 0.1 0.0037 17.0 0.1 1.7 1 0 0 1 1 1 1 AAA+ lid domain IstB_IS21 PF01695.17 gi|257372942|ref|YP_003175716.1| - 0.0025 17.6 0.0 0.0064 16.2 0.0 1.7 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_25 PF13481.6 gi|257372942|ref|YP_003175716.1| - 0.0079 15.8 3.4 0.037 13.6 0.3 2.5 2 1 0 3 3 2 1 AAA domain PhoH PF02562.16 gi|257372942|ref|YP_003175716.1| - 0.011 15.2 0.0 0.023 14.1 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein ABC_tran PF00005.27 gi|257372942|ref|YP_003175716.1| - 0.012 16.2 0.2 0.16 12.4 0.0 2.3 2 0 0 2 2 2 0 ABC transporter AAA_24 PF13479.6 gi|257372942|ref|YP_003175716.1| - 0.013 15.3 0.1 0.038 13.7 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|257372942|ref|YP_003175716.1| - 0.015 15.5 0.0 0.057 13.6 0.0 2.0 2 0 0 2 2 1 0 AAA domain Sigma54_activat PF00158.26 gi|257372942|ref|YP_003175716.1| - 0.015 15.0 0.0 0.38 10.5 0.0 2.2 1 1 0 1 1 1 0 Sigma-54 interaction domain AAA_18 PF13238.6 gi|257372942|ref|YP_003175716.1| - 0.022 15.3 0.1 0.075 13.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.12 gi|257372942|ref|YP_003175716.1| - 0.025 13.9 0.2 5 6.4 0.1 2.3 2 0 0 2 2 2 0 Zeta toxin AAA_14 PF13173.6 gi|257372942|ref|YP_003175716.1| - 0.031 14.3 0.0 0.079 13.0 0.0 1.7 1 0 0 1 1 1 0 AAA domain TPR_2 PF07719.17 gi|257372942|ref|YP_003175716.1| - 0.031 14.4 0.5 0.082 13.1 0.5 1.7 1 0 0 1 1 1 0 Tetratricopeptide repeat ATPase PF06745.13 gi|257372942|ref|YP_003175716.1| - 0.035 13.5 0.9 0.76 9.1 0.1 2.8 2 1 1 3 3 3 0 KaiC TPR_1 PF00515.28 gi|257372942|ref|YP_003175716.1| - 0.039 13.8 0.3 0.089 12.6 0.3 1.6 1 0 0 1 1 1 0 Tetratricopeptide repeat Vps4_C PF09336.10 gi|257372942|ref|YP_003175716.1| - 0.055 13.5 0.1 0.22 11.6 0.0 2.1 2 0 0 2 2 1 0 Vps4 C terminal oligomerisation domain AAA_7 PF12775.7 gi|257372942|ref|YP_003175716.1| - 0.058 12.9 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region TIP49 PF06068.13 gi|257372942|ref|YP_003175716.1| - 0.093 11.9 0.1 0.23 10.6 0.0 1.7 2 0 0 2 2 2 0 TIP49 P-loop domain RNA_helicase PF00910.22 gi|257372942|ref|YP_003175716.1| - 0.093 13.1 0.0 0.56 10.6 0.0 2.2 2 0 0 2 2 2 0 RNA helicase AAA_3 PF07726.11 gi|257372942|ref|YP_003175716.1| - 0.15 11.9 0.0 0.26 11.2 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Sigma54_activ_2 PF14532.6 gi|257372942|ref|YP_003175716.1| - 0.16 12.1 0.0 0.49 10.5 0.0 1.7 1 1 0 1 1 1 0 Sigma-54 interaction domain AAA_11 PF13086.6 gi|257372942|ref|YP_003175716.1| - 0.48 10.2 3.9 0.79 9.5 0.0 2.2 2 0 0 2 2 2 0 AAA domain DUF4085 PF13315.6 gi|257372943|ref|YP_003175717.1| - 5.6e-05 22.9 4.5 5.6e-05 22.9 4.5 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF4085) GAS PF13851.6 gi|257372943|ref|YP_003175717.1| - 0.0026 17.1 19.6 0.0027 17.1 12.7 2.5 1 1 1 2 2 2 1 Growth-arrest specific micro-tubule binding Lsr2 PF11774.8 gi|257372943|ref|YP_003175717.1| - 0.0086 16.2 5.4 0.032 14.4 5.4 2.1 1 1 0 1 1 1 1 Lsr2 TRAF_BIRC3_bd PF16673.5 gi|257372943|ref|YP_003175717.1| - 0.032 14.0 7.3 0.039 13.8 2.4 2.4 2 0 0 2 2 2 0 TNF receptor-associated factor BIRC3 binding domain Seryl_tRNA_N PF02403.22 gi|257372943|ref|YP_003175717.1| - 0.038 14.2 20.9 1.6 9.0 3.5 3.2 2 1 1 3 3 3 0 Seryl-tRNA synthetase N-terminal domain Styelin PF17562.2 gi|257372943|ref|YP_003175717.1| - 0.039 14.3 0.5 0.12 12.7 0.5 1.8 1 0 0 1 1 1 0 Styelin tRNA-synt_1d PF00750.19 gi|257372943|ref|YP_003175717.1| - 0.044 12.7 3.6 0.054 12.4 3.6 1.1 1 0 0 1 1 1 0 tRNA synthetases class I (R) UCH PF00443.29 gi|257372943|ref|YP_003175717.1| - 0.18 11.2 4.5 0.21 11.0 4.5 1.2 1 0 0 1 1 1 0 Ubiquitin carboxyl-terminal hydrolase DUF4201 PF13870.6 gi|257372943|ref|YP_003175717.1| - 0.28 10.9 19.0 0.4 10.4 19.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4201) OmpH PF03938.14 gi|257372943|ref|YP_003175717.1| - 0.37 11.1 23.5 2.8e+02 1.8 23.5 2.3 1 1 0 1 1 1 0 Outer membrane protein (OmpH-like) T6PP_N PF18572.1 gi|257372943|ref|YP_003175717.1| - 0.39 10.6 7.6 4.5 7.2 7.6 2.5 1 1 0 1 1 1 0 Trehalose-6-phosphate phosphatase N-terminal helical bundle domain ECH_2 PF16113.5 gi|257372943|ref|YP_003175717.1| - 0.69 9.3 5.5 0.86 9.0 5.5 1.3 1 0 0 1 1 1 0 Enoyl-CoA hydratase/isomerase DUF883 PF05957.13 gi|257372943|ref|YP_003175717.1| - 2.3 8.9 6.0 2.5 8.8 4.1 2.1 1 1 2 3 3 3 0 Bacterial protein of unknown function (DUF883) MbeD_MobD PF04899.12 gi|257372943|ref|YP_003175717.1| - 2.6 8.2 8.2 2.6 8.2 4.0 2.8 1 1 1 2 2 2 0 MbeD/MobD like YlqD PF11068.8 gi|257372943|ref|YP_003175717.1| - 2.9 8.3 15.7 0.34 11.3 6.9 2.2 1 1 1 2 2 2 0 YlqD protein Spore_III_AB PF09548.10 gi|257372943|ref|YP_003175717.1| - 3.2 7.8 12.9 3.8 7.6 9.4 2.1 1 1 1 2 2 2 0 Stage III sporulation protein AB (spore_III_AB) Muted PF14942.6 gi|257372943|ref|YP_003175717.1| - 4.9 7.5 19.3 0.23 11.8 5.7 2.4 1 1 1 2 2 2 0 Organelle biogenesis, Muted-like protein Prominin PF05478.11 gi|257372943|ref|YP_003175717.1| - 8.5 4.2 7.5 4.8 5.0 2.3 1.8 1 1 1 2 2 2 0 Prominin LUC7 PF03194.15 gi|257372944|ref|YP_003175718.1| - 0.84 9.2 11.5 1.1 8.9 11.3 1.4 1 1 0 1 1 1 0 LUC7 N_terminus PIN_8 PF18476.1 gi|257372944|ref|YP_003175718.1| - 2.4 8.0 12.2 0.54 10.1 6.9 1.9 1 1 1 2 2 2 0 PIN like domain Erp_C PF06780.11 gi|257372944|ref|YP_003175718.1| - 5.3 7.1 14.7 1.1 9.3 3.3 3.1 2 2 1 3 3 3 0 Erp protein C-terminus DUF883 PF05957.13 gi|257372944|ref|YP_003175718.1| - 9.6 6.9 13.9 85 3.8 7.6 3.4 1 1 1 3 3 3 0 Bacterial protein of unknown function (DUF883) Nitrate_red_del PF02613.15 gi|257372945|ref|YP_003175719.1| - 3.8e-31 107.9 0.0 4.6e-31 107.7 0.0 1.2 1 0 0 1 1 1 1 Nitrate reductase delta subunit NrfD PF03916.14 gi|257372946|ref|YP_003175720.1| - 2.1e-72 244.4 15.6 3.3e-72 243.8 15.6 1.3 1 0 0 1 1 1 1 Polysulphide reductase, NrfD DUF2976 PF11190.8 gi|257372946|ref|YP_003175720.1| - 0.21 11.4 0.1 0.21 11.4 0.1 2.8 4 0 0 4 4 4 0 Protein of unknown function (DUF2976) Fer4_11 PF13247.6 gi|257372947|ref|YP_003175721.1| - 5.3e-23 81.0 18.2 4.1e-15 55.7 7.1 2.7 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|257372947|ref|YP_003175721.1| - 5.1e-18 65.4 27.3 4.8e-09 36.7 10.4 3.1 2 2 1 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|257372947|ref|YP_003175721.1| - 5.1e-17 61.7 23.5 1.9e-10 40.7 7.2 3.5 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|257372947|ref|YP_003175721.1| - 3.8e-14 52.1 33.6 4.9e-08 32.7 4.4 4.5 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4 PF00037.27 gi|257372947|ref|YP_003175721.1| - 8e-14 50.8 40.4 1.3e-08 34.3 4.3 5.7 5 1 0 5 5 5 3 4Fe-4S binding domain Fer4_2 PF12797.7 gi|257372947|ref|YP_003175721.1| - 4.1e-11 42.3 30.6 1.6e-05 24.7 2.0 4.5 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_9 PF13187.6 gi|257372947|ref|YP_003175721.1| - 4.2e-11 42.8 26.6 1.4e-06 28.4 7.6 3.0 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|257372947|ref|YP_003175721.1| - 3.6e-10 40.1 20.7 9e-06 26.1 5.7 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|257372947|ref|YP_003175721.1| - 1.9e-06 27.9 29.1 0.00028 21.0 0.5 4.0 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|257372947|ref|YP_003175721.1| - 1.6e-05 25.5 43.4 0.018 16.0 7.2 4.2 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_17 PF13534.6 gi|257372947|ref|YP_003175721.1| - 2.2e-05 24.9 27.0 0.016 15.7 7.8 4.1 3 1 1 4 4 4 3 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|257372947|ref|YP_003175721.1| - 3.2e-05 24.1 37.9 0.0012 19.2 3.3 4.4 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_16 PF13484.6 gi|257372947|ref|YP_003175721.1| - 0.0043 18.0 30.7 1.1 10.2 3.1 4.4 2 1 2 4 4 4 3 4Fe-4S double cluster binding domain Fer4_13 PF13370.6 gi|257372947|ref|YP_003175721.1| - 0.013 16.0 0.6 0.013 16.0 0.6 4.5 5 0 0 5 5 5 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|257372947|ref|YP_003175721.1| - 0.019 15.7 1.5 0.019 15.7 1.5 4.4 3 3 0 3 3 3 0 4Fe-4S single cluster domain Fer4_20 PF14691.6 gi|257372947|ref|YP_003175721.1| - 0.64 9.8 26.3 0.54 10.0 4.5 4.1 3 1 1 4 4 4 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_18 PF13746.6 gi|257372947|ref|YP_003175721.1| - 0.95 9.7 21.5 1.5 9.1 8.8 4.0 2 1 2 4 4 4 0 4Fe-4S dicluster domain Molybdopterin PF00384.22 gi|257372948|ref|YP_003175722.1| - 5.5e-53 180.5 0.0 3.1e-52 178.0 0.0 1.9 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|257372948|ref|YP_003175722.1| - 5.1e-24 84.5 0.0 1.6e-23 82.9 0.0 1.8 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|257372948|ref|YP_003175722.1| - 2.1e-10 40.4 2.5 2.8e-10 40.0 1.0 2.1 2 0 0 2 2 2 1 Molybdopterin oxidoreductase Fe4S4 domain TAT_signal PF10518.9 gi|257372948|ref|YP_003175722.1| - 0.064 13.1 0.7 0.13 12.1 0.7 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence SnoaL_2 PF12680.7 gi|257372948|ref|YP_003175722.1| - 1.3 9.7 4.2 3.1 8.5 0.5 3.4 3 1 0 3 3 3 0 SnoaL-like domain Ferredoxin_N PF16947.5 gi|257372949|ref|YP_003175723.1| - 3.2e-33 113.6 0.8 4e-33 113.3 0.8 1.1 1 0 0 1 1 1 1 N-terminal region of 4Fe-4S ferredoxin iron-sulfur binding SHOCT PF09851.9 gi|257372949|ref|YP_003175723.1| - 0.12 12.1 0.2 0.24 11.2 0.2 1.6 1 0 0 1 1 1 0 Short C-terminal domain HTH_10 PF04967.12 gi|257372950|ref|YP_003175724.1| - 6.5e-17 61.1 0.1 1.1e-16 60.3 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_24 PF13412.6 gi|257372950|ref|YP_003175724.1| - 0.004 16.7 0.0 0.0078 15.8 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_1 PF00126.27 gi|257372950|ref|YP_003175724.1| - 0.01 15.8 0.2 0.022 14.7 0.2 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Sigma70_r4 PF04545.16 gi|257372950|ref|YP_003175724.1| - 0.011 15.3 0.0 0.027 14.0 0.0 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_20 PF12840.7 gi|257372950|ref|YP_003175724.1| - 0.011 15.7 0.3 0.043 13.9 0.1 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|257372950|ref|YP_003175724.1| - 0.021 14.7 0.0 0.042 13.7 0.0 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain PuR_N PF09182.10 gi|257372950|ref|YP_003175724.1| - 0.05 13.5 0.1 0.39 10.7 0.0 2.1 2 0 0 2 2 2 0 Bacterial purine repressor, N-terminal MarR_2 PF12802.7 gi|257372950|ref|YP_003175724.1| - 0.057 13.3 0.5 0.26 11.2 0.0 2.2 2 1 1 3 3 3 0 MarR family HTH_3 PF01381.22 gi|257372950|ref|YP_003175724.1| - 0.12 12.4 0.0 0.24 11.5 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix TMF_TATA_bd PF12325.8 gi|257372953|ref|YP_003175727.1| - 0.016 15.5 4.5 0.43 10.8 0.2 2.7 3 0 0 3 3 3 0 TATA element modulatory factor 1 TATA binding HHH_8 PF14716.6 gi|257372953|ref|YP_003175727.1| - 0.031 14.6 0.4 0.18 12.2 0.4 2.3 1 1 1 2 2 2 0 Helix-hairpin-helix domain OmpH PF03938.14 gi|257372953|ref|YP_003175727.1| - 0.42 11.0 6.7 0.24 11.7 2.2 2.0 1 1 1 2 2 2 0 Outer membrane protein (OmpH-like) Fe_dep_repress PF01325.19 gi|257372954|ref|YP_003175728.1| - 3.2e-12 46.4 0.1 4.7e-12 45.9 0.1 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.7 gi|257372954|ref|YP_003175728.1| - 8.7e-07 28.7 0.1 1.4e-06 28.1 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|257372954|ref|YP_003175728.1| - 3.5e-05 24.2 0.1 5e-05 23.7 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.22 gi|257372954|ref|YP_003175728.1| - 0.00027 20.8 0.0 0.00043 20.1 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_12 PF08461.10 gi|257372954|ref|YP_003175728.1| - 0.0039 17.1 0.0 0.0076 16.2 0.0 1.5 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_Crp_2 PF13545.6 gi|257372954|ref|YP_003175728.1| - 0.0084 16.1 0.0 0.012 15.5 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Rio2_N PF09202.11 gi|257372954|ref|YP_003175728.1| - 0.011 15.9 0.0 0.017 15.3 0.0 1.2 1 0 0 1 1 1 0 Rio2, N-terminal B-block_TFIIIC PF04182.12 gi|257372954|ref|YP_003175728.1| - 0.016 15.3 0.0 0.022 14.9 0.0 1.2 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC TrmB PF01978.19 gi|257372954|ref|YP_003175728.1| - 0.024 14.5 0.1 0.037 13.9 0.1 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|257372954|ref|YP_003175728.1| - 0.13 12.6 0.0 0.2 12.0 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator DUF4149 PF13664.6 gi|257372955|ref|YP_003175729.1| - 0.022 15.1 0.5 0.022 15.1 0.5 2.8 3 1 0 3 3 3 0 Domain of unknown function (DUF4149) DUF2249 PF10006.9 gi|257372957|ref|YP_003175731.1| - 7e-85 278.9 21.8 1e-27 95.8 0.8 4.1 4 0 0 4 4 4 4 Uncharacterized conserved protein (DUF2249) DUF2249 PF10006.9 gi|257372958|ref|YP_003175732.1| - 2.5e-20 72.1 0.7 2.9e-20 71.9 0.7 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) TusA PF01206.17 gi|257372959|ref|YP_003175733.1| - 1.7e-08 34.2 0.0 2e-08 33.9 0.0 1.1 1 0 0 1 1 1 1 Sulfurtransferase TusA CopD PF05425.13 gi|257372960|ref|YP_003175734.1| - 1.7e-05 25.2 4.7 1.7e-05 25.2 4.7 1.9 1 1 1 2 2 2 1 Copper resistance protein D DUF836 PF05768.14 gi|257372961|ref|YP_003175735.1| - 2.8e-13 50.1 0.1 3.1e-13 49.9 0.1 1.0 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Glutaredoxin PF00462.24 gi|257372961|ref|YP_003175735.1| - 0.00015 21.9 0.1 0.00032 20.8 0.1 1.6 1 1 1 2 2 2 1 Glutaredoxin Thioredoxin_3 PF13192.6 gi|257372961|ref|YP_003175735.1| - 0.0026 17.8 0.0 0.0028 17.7 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin domain GP24_25 PF17388.2 gi|257372961|ref|YP_003175735.1| - 0.026 14.5 0.2 0.027 14.4 0.2 1.1 1 0 0 1 1 1 0 Tail assembly gene products 24 & 25 Arc PF03869.14 gi|257372961|ref|YP_003175735.1| - 0.074 12.9 0.5 0.37 10.7 0.0 1.9 2 0 0 2 2 2 0 Arc-like DNA binding domain PP2C_2 PF13672.6 gi|257372962|ref|YP_003175736.1| - 5.5e-15 55.6 3.7 8.2e-15 55.0 3.7 1.2 1 0 0 1 1 1 1 Protein phosphatase 2C PP2C PF00481.21 gi|257372962|ref|YP_003175736.1| - 2.2e-10 40.6 0.1 6.4e-08 32.5 0.1 2.1 2 0 0 2 2 2 2 Protein phosphatase 2C SpoIIE PF07228.12 gi|257372962|ref|YP_003175736.1| - 1e-06 28.8 6.2 8e-06 25.9 6.2 1.9 1 1 0 1 1 1 1 Stage II sporulation protein E (SpoIIE) DUF3450 PF11932.8 gi|257372963|ref|YP_003175737.1| - 0.0019 17.6 2.1 0.0019 17.6 2.1 3.2 1 1 1 2 2 2 1 Protein of unknown function (DUF3450) CENP-F_leu_zip PF10473.9 gi|257372963|ref|YP_003175737.1| - 0.0031 17.5 15.7 0.0031 17.5 15.7 3.8 3 1 1 4 4 4 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Baculo_PEP_C PF04513.12 gi|257372963|ref|YP_003175737.1| - 0.0049 16.9 11.7 0.11 12.5 0.4 3.4 2 1 1 3 3 2 2 Baculovirus polyhedron envelope protein, PEP, C terminus DUF1664 PF07889.12 gi|257372963|ref|YP_003175737.1| - 0.024 14.7 16.2 0.074 13.1 1.4 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF1664) CHDCT2 PF08074.11 gi|257372963|ref|YP_003175737.1| - 0.097 12.8 5.9 0.062 13.5 2.3 2.5 2 0 0 2 2 2 0 CHDCT2 (NUC038) domain DUF948 PF06103.11 gi|257372963|ref|YP_003175737.1| - 0.13 12.5 4.9 6.6 7.1 0.1 3.4 1 1 1 3 3 3 0 Bacterial protein of unknown function (DUF948) DUF724 PF05266.14 gi|257372963|ref|YP_003175737.1| - 0.42 10.4 19.3 0.14 12.0 7.6 3.1 2 1 2 4 4 4 0 Protein of unknown function (DUF724) Atg14 PF10186.9 gi|257372963|ref|YP_003175737.1| - 0.57 9.2 24.8 0.16 11.0 17.8 2.9 2 1 1 3 3 3 0 Vacuolar sorting 38 and autophagy-related subunit 14 YlqD PF11068.8 gi|257372963|ref|YP_003175737.1| - 0.67 10.3 23.3 0.083 13.3 5.4 3.7 2 2 1 3 3 3 0 YlqD protein Tweety PF04906.13 gi|257372963|ref|YP_003175737.1| - 0.82 8.3 2.3 1 7.9 0.9 1.8 1 1 1 2 2 2 0 Tweety ABC_tran_CTD PF16326.5 gi|257372963|ref|YP_003175737.1| - 0.87 9.9 27.3 9.7 6.5 0.4 4.7 1 1 2 3 3 3 0 ABC transporter C-terminal domain TLE_N PF03920.15 gi|257372963|ref|YP_003175737.1| - 1.2 9.2 6.9 2.4 8.2 0.3 3.1 2 1 0 3 3 3 0 Groucho/TLE N-terminal Q-rich domain YabA PF06156.13 gi|257372963|ref|YP_003175737.1| - 1.9 9.2 23.2 1.3 9.7 0.2 5.1 4 1 2 6 6 4 0 Initiation control protein YabA CALCOCO1 PF07888.11 gi|257372963|ref|YP_003175737.1| - 2 7.2 39.9 0.19 10.5 29.7 2.3 2 0 0 2 2 2 0 Calcium binding and coiled-coil domain (CALCOCO1) like Cytochrom_B562 PF07361.11 gi|257372963|ref|YP_003175737.1| - 2.1 9.1 16.6 4.2 8.1 1.9 4.6 3 1 1 4 4 4 0 Cytochrome b562 DASH_Dam1 PF08653.10 gi|257372963|ref|YP_003175737.1| - 2.6 7.9 4.3 31 4.5 0.0 4.3 4 1 1 5 5 5 0 DASH complex subunit Dam1 Spc7 PF08317.11 gi|257372963|ref|YP_003175737.1| - 3.4 6.5 37.0 0.3 9.9 14.3 3.1 2 1 1 3 3 3 0 Spc7 kinetochore protein RasGAP_C PF03836.15 gi|257372963|ref|YP_003175737.1| - 4.6 7.4 14.2 4 7.6 3.9 3.4 2 1 1 3 3 3 0 RasGAP C-terminus FlaC_arch PF05377.11 gi|257372963|ref|YP_003175737.1| - 5.1 7.6 20.1 12 6.4 0.1 5.9 4 1 1 5 5 5 0 Flagella accessory protein C (FlaC) Exonuc_VII_L PF02601.15 gi|257372963|ref|YP_003175737.1| - 7.9 5.9 24.2 0.14 11.7 7.7 2.9 1 1 1 2 2 2 0 Exonuclease VII, large subunit GIT_CC PF16559.5 gi|257372963|ref|YP_003175737.1| - 8.6 6.3 8.6 29 4.6 0.5 3.9 3 1 1 4 4 4 0 GIT coiled-coil Rho guanine nucleotide exchange factor DUF4407 PF14362.6 gi|257372963|ref|YP_003175737.1| - 9.1 5.5 27.3 4.6 6.5 17.3 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) GvpG PF05120.12 gi|257372963|ref|YP_003175737.1| - 9.3 6.3 15.3 0.15 12.1 2.2 4.0 3 1 1 4 4 4 0 Gas vesicle protein G COG5 PF10392.9 gi|257372963|ref|YP_003175737.1| - 9.3 6.4 12.3 8.6 6.5 3.4 2.7 1 1 1 2 2 2 0 Golgi transport complex subunit 5 Prominin PF05478.11 gi|257372963|ref|YP_003175737.1| - 9.3 4.1 8.3 16 3.3 7.7 1.6 1 1 0 1 1 1 0 Prominin ATG16 PF08614.11 gi|257372963|ref|YP_003175737.1| - 9.9 6.3 37.0 19 5.4 8.3 3.3 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) DUF2344 PF10105.9 gi|257372964|ref|YP_003175738.1| - 0.021 14.7 0.1 0.028 14.3 0.1 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2344) COX16 PF14138.6 gi|257372964|ref|YP_003175738.1| - 4.3 7.9 5.9 9.9 6.8 0.1 2.8 1 1 1 2 2 2 0 Cytochrome c oxidase assembly protein COX16 Pkinase PF00069.25 gi|257372967|ref|YP_003175741.1| - 7.6e-26 91.0 0.0 1e-25 90.6 0.0 1.1 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|257372967|ref|YP_003175741.1| - 9.1e-22 77.6 0.0 1.2e-21 77.2 0.0 1.1 1 0 0 1 1 1 1 Protein tyrosine kinase Kdo PF06293.14 gi|257372967|ref|YP_003175741.1| - 0.15 11.4 0.0 0.28 10.5 0.0 1.4 1 0 0 1 1 1 0 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase PF00069.25 gi|257372968|ref|YP_003175742.1| - 2.5e-26 92.6 0.0 3.4e-26 92.2 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain HEAT_2 PF13646.6 gi|257372968|ref|YP_003175742.1| - 5.4e-22 78.0 45.4 6.2e-08 32.9 2.1 7.0 4 2 3 7 7 7 6 HEAT repeats Pkinase_Tyr PF07714.17 gi|257372968|ref|YP_003175742.1| - 2.3e-18 66.4 0.0 3e-18 66.0 0.0 1.1 1 0 0 1 1 1 1 Protein tyrosine kinase HEAT PF02985.22 gi|257372968|ref|YP_003175742.1| - 6.4e-16 57.1 15.0 0.045 14.0 0.0 9.9 11 0 0 11 11 10 4 HEAT repeat HEAT_EZ PF13513.6 gi|257372968|ref|YP_003175742.1| - 1.6e-13 50.9 35.5 3.2e-07 30.7 0.9 9.6 7 3 0 7 7 7 2 HEAT-like repeat Adaptin_N PF01602.20 gi|257372968|ref|YP_003175742.1| - 8.7e-13 47.7 0.0 0.00083 18.0 0.0 4.3 4 1 1 5 5 5 3 Adaptin N terminal region Cnd1 PF12717.7 gi|257372968|ref|YP_003175742.1| - 4.7e-08 33.2 0.0 0.00064 19.8 0.0 3.5 3 0 0 3 3 3 2 non-SMC mitotic condensation complex subunit 1 RTP1_C1 PF10363.9 gi|257372968|ref|YP_003175742.1| - 0.015 15.5 0.0 0.85 9.8 0.0 3.1 2 1 0 2 2 2 0 Required for nuclear transport of RNA pol II C-terminus 1 API5 PF05918.11 gi|257372968|ref|YP_003175742.1| - 0.043 12.6 0.3 0.35 9.6 0.2 2.4 2 1 1 3 3 3 0 Apoptosis inhibitory protein 5 (API5) Arm PF00514.23 gi|257372968|ref|YP_003175742.1| - 0.044 13.8 8.4 8.9 6.5 0.0 6.8 8 0 0 8 8 8 0 Armadillo/beta-catenin-like repeat HEAT_PBS PF03130.16 gi|257372968|ref|YP_003175742.1| - 0.12 13.1 0.1 0.12 13.1 0.1 9.1 9 1 0 9 9 9 0 PBS lyase HEAT-like repeat Gene66 PF02053.15 gi|257372968|ref|YP_003175742.1| - 0.13 11.9 0.2 0.26 10.9 0.2 1.4 1 0 0 1 1 1 0 Gene 66 (IR5) protein Cnd3 PF12719.7 gi|257372968|ref|YP_003175742.1| - 0.19 10.9 0.0 0.34 10.1 0.0 1.3 1 0 0 1 1 1 0 Nuclear condensing complex subunits, C-term domain Pkinase PF00069.25 gi|257372969|ref|YP_003175743.1| - 1.3e-32 113.2 0.0 1.7e-32 112.8 0.0 1.1 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|257372969|ref|YP_003175743.1| - 2.1e-25 89.5 0.0 2.6e-25 89.2 0.0 1.1 1 0 0 1 1 1 1 Protein tyrosine kinase HTH_20 PF12840.7 gi|257372969|ref|YP_003175743.1| - 6.9e-05 22.8 0.1 0.00023 21.2 0.1 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain APH PF01636.23 gi|257372969|ref|YP_003175743.1| - 0.00066 19.7 0.1 0.21 11.5 0.1 2.5 1 1 1 2 2 2 2 Phosphotransferase enzyme family HTH_27 PF13463.6 gi|257372969|ref|YP_003175743.1| - 0.022 15.2 0.0 0.046 14.2 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain Gly-zipper_YMGG PF13441.6 gi|257372970|ref|YP_003175744.1| - 0.0054 16.4 1.9 0.0054 16.4 1.9 1.7 2 1 0 2 2 2 1 YMGG-like Gly-zipper Phage_holin_3_2 PF04550.12 gi|257372970|ref|YP_003175744.1| - 0.1 13.1 10.9 0.14 12.7 10.9 1.2 1 0 0 1 1 1 0 Phage holin family 2 DUF1072 PF06380.11 gi|257372970|ref|YP_003175744.1| - 0.25 11.2 3.9 1.2 9.1 0.1 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF1072) PT-VENN PF04829.13 gi|257372970|ref|YP_003175744.1| - 0.41 10.8 4.4 13 6.0 0.1 2.3 2 0 0 2 2 2 0 Pre-toxin domain with VENN motif Phage_holin_5_2 PF16079.5 gi|257372970|ref|YP_003175744.1| - 0.99 9.8 9.7 1.8 8.9 4.4 2.1 1 1 1 2 2 2 0 Phage holin family Hol44, in holin superfamily V DUF3093 PF11292.8 gi|257372970|ref|YP_003175744.1| - 3.2 8.0 5.6 4.2 7.6 5.4 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3093) PQQ_3 PF13570.6 gi|257372971|ref|YP_003175745.1| - 1.2e-82 270.6 62.8 4.9e-14 52.3 1.4 8.8 8 0 0 8 8 8 8 PQQ-like domain PQQ PF01011.21 gi|257372971|ref|YP_003175745.1| - 1.9e-67 220.2 31.5 2.8e-10 39.6 0.4 9.1 9 0 0 9 9 9 7 PQQ enzyme repeat PQQ_2 PF13360.6 gi|257372971|ref|YP_003175745.1| - 9.9e-62 208.6 30.3 1.2e-22 80.7 5.1 3.4 1 1 2 3 3 3 3 PQQ-like domain Pkinase PF00069.25 gi|257372971|ref|YP_003175745.1| - 1.8e-24 86.5 0.0 2.8e-24 85.9 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain HEAT_2 PF13646.6 gi|257372971|ref|YP_003175745.1| - 2.1e-12 47.3 21.9 6.2e-07 29.7 10.4 2.9 2 0 0 2 2 2 2 HEAT repeats Pkinase_Tyr PF07714.17 gi|257372971|ref|YP_003175745.1| - 1e-10 41.3 0.0 1.6e-10 40.7 0.0 1.2 1 0 0 1 1 1 1 Protein tyrosine kinase Adaptin_N PF01602.20 gi|257372971|ref|YP_003175745.1| - 3.1e-08 32.6 0.0 0.0029 16.3 0.0 2.1 1 1 0 2 2 2 2 Adaptin N terminal region Cnd1 PF12717.7 gi|257372971|ref|YP_003175745.1| - 3.3e-08 33.7 0.1 0.11 12.6 0.0 3.2 1 1 2 3 3 3 3 non-SMC mitotic condensation complex subunit 1 HEAT_EZ PF13513.6 gi|257372971|ref|YP_003175745.1| - 3e-07 30.8 26.6 0.0021 18.5 1.9 5.0 1 1 4 5 5 5 4 HEAT-like repeat Arm PF00514.23 gi|257372971|ref|YP_003175745.1| - 0.0015 18.5 1.7 0.54 10.4 0.3 3.5 3 0 0 3 3 3 1 Armadillo/beta-catenin-like repeat HEAT PF02985.22 gi|257372971|ref|YP_003175745.1| - 0.0054 16.9 14.6 2 8.9 0.1 5.4 5 0 0 5 5 5 1 HEAT repeat API5 PF05918.11 gi|257372971|ref|YP_003175745.1| - 0.025 13.4 0.5 0.29 9.9 0.2 2.0 2 0 0 2 2 2 0 Apoptosis inhibitory protein 5 (API5) IFRD PF05004.13 gi|257372971|ref|YP_003175745.1| - 0.046 12.8 1.5 0.068 12.3 0.5 1.7 2 0 0 2 2 2 0 Interferon-related developmental regulator (IFRD) CLASP_N PF12348.8 gi|257372971|ref|YP_003175745.1| - 0.16 11.5 0.0 0.9 9.1 0.0 1.8 1 1 0 2 2 2 0 CLASP N terminal Pkinase PF00069.25 gi|257372972|ref|YP_003175746.1| - 2.1e-25 89.6 0.0 2.9e-25 89.1 0.0 1.1 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|257372972|ref|YP_003175746.1| - 1.6e-15 57.1 0.0 2.1e-15 56.7 0.0 1.1 1 0 0 1 1 1 1 Protein tyrosine kinase CENP-B_N PF04218.13 gi|257372972|ref|YP_003175746.1| - 0.24 11.1 1.3 27 4.5 0.2 3.0 3 0 0 3 3 3 0 CENP-B N-terminal DNA-binding domain N_formyltrans_C PF18216.1 gi|257372972|ref|YP_003175746.1| - 0.95 9.2 3.3 3.6 7.3 0.0 2.7 3 0 0 3 3 3 0 N-formyltransferase dimerization C-terminal domain Cpn60_TCP1 PF00118.24 gi|257372973|ref|YP_003175747.1| - 1.2e-14 53.8 0.0 5.4e-10 38.5 0.0 2.1 1 1 1 2 2 2 2 TCP-1/cpn60 chaperonin family HEAT_EZ PF13513.6 gi|257372973|ref|YP_003175747.1| - 0.082 13.4 1.0 0.66 10.6 0.1 2.8 2 1 1 3 3 3 0 HEAT-like repeat OrfB_Zn_ribbon PF07282.11 gi|257372974|ref|YP_003175748.1| - 1e-20 73.4 1.6 2.1e-20 72.4 1.6 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|257372974|ref|YP_003175748.1| - 7.7e-06 26.1 0.2 2.1e-05 24.7 0.2 1.7 1 0 0 1 1 1 1 Probable transposase DUF2283 PF10049.9 gi|257372974|ref|YP_003175748.1| - 0.024 14.9 0.1 0.057 13.6 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2283) IBR PF01485.21 gi|257372974|ref|YP_003175748.1| - 0.024 14.8 0.9 0.053 13.7 0.9 1.5 1 0 0 1 1 1 0 IBR domain, a half RING-finger domain Mrr_cat PF04471.12 gi|257372975|ref|YP_003175749.1| - 1.5e-25 89.4 0.1 3e-25 88.5 0.1 1.5 1 0 0 1 1 1 1 Restriction endonuclease Mrr_cat_2 PF13156.6 gi|257372975|ref|YP_003175749.1| - 7.8e-09 35.5 0.0 1.7e-08 34.4 0.0 1.5 1 0 0 1 1 1 1 Restriction endonuclease HTH_47 PF16221.5 gi|257372975|ref|YP_003175749.1| - 0.0038 16.8 0.5 4.5 6.9 0.0 3.4 4 1 0 4 4 4 2 winged helix-turn-helix GGDEF_2 PF17853.1 gi|257372975|ref|YP_003175749.1| - 0.023 14.9 2.9 0.072 13.3 1.4 2.3 2 0 0 2 2 2 0 GGDEF-like domain Fic PF02661.18 gi|257372976|ref|YP_003175750.1| - 3.3e-09 37.5 0.1 2.7e-08 34.6 0.0 2.3 2 1 0 2 2 2 1 Fic/DOC family DZR PF12773.7 gi|257372978|ref|YP_003175752.1| - 0.00082 19.3 0.9 0.0013 18.8 0.9 1.2 1 0 0 1 1 1 1 Double zinc ribbon HypA PF01155.19 gi|257372978|ref|YP_003175752.1| - 0.00095 19.2 0.1 0.0013 18.7 0.1 1.2 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Phage_holin_3_6 PF07332.11 gi|257372978|ref|YP_003175752.1| - 0.0053 16.8 0.9 0.0072 16.3 0.9 1.1 1 0 0 1 1 1 1 Putative Actinobacterial Holin-X, holin superfamily III zf-ribbon_3 PF13248.6 gi|257372978|ref|YP_003175752.1| - 0.0098 15.3 1.6 0.037 13.5 0.2 2.1 2 0 0 2 2 2 1 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|257372978|ref|YP_003175752.1| - 0.026 14.6 2.2 0.048 13.8 2.0 1.5 1 1 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_6 PF14599.6 gi|257372978|ref|YP_003175752.1| - 0.029 14.4 0.1 0.039 14.0 0.1 1.2 1 0 0 1 1 1 0 Zinc-ribbon TF_Zn_Ribbon PF08271.12 gi|257372978|ref|YP_003175752.1| - 0.042 13.4 3.6 0.076 12.5 3.6 1.4 1 0 0 1 1 1 0 TFIIB zinc-binding Cytochrome-c551 PF10643.9 gi|257372978|ref|YP_003175752.1| - 0.057 13.0 0.0 0.09 12.3 0.0 1.2 1 0 0 1 1 1 0 Photosystem P840 reaction-centre cytochrome c-551 OrfB_Zn_ribbon PF07282.11 gi|257372978|ref|YP_003175752.1| - 0.061 13.3 0.4 0.098 12.6 0.4 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain YhfH PF14149.6 gi|257372978|ref|YP_003175752.1| - 0.084 12.9 0.7 0.13 12.2 0.7 1.3 1 0 0 1 1 1 0 YhfH-like protein zinc_ribbon_4 PF13717.6 gi|257372978|ref|YP_003175752.1| - 0.1 12.5 3.4 0.99 9.4 3.1 2.1 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_9 PF14369.6 gi|257372978|ref|YP_003175752.1| - 0.14 12.5 1.1 0.49 10.7 0.2 2.1 2 0 0 2 2 2 0 zinc-ribbon zf-IS66 PF13005.7 gi|257372978|ref|YP_003175752.1| - 0.15 12.5 0.8 15 6.1 0.1 2.2 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 zinc_ribbon_2 PF13240.6 gi|257372978|ref|YP_003175752.1| - 0.16 11.7 4.1 0.52 10.1 4.1 1.7 1 1 0 1 1 1 0 zinc-ribbon domain zf-TFIIB PF13453.6 gi|257372978|ref|YP_003175752.1| - 0.51 9.7 2.6 1.2 8.5 2.6 1.6 1 1 0 1 1 1 0 Transcription factor zinc-finger zinc_ribbon_5 PF13719.6 gi|257372978|ref|YP_003175752.1| - 1.2 8.9 4.5 1.5 8.6 0.5 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-RING_7 PF02591.15 gi|257372978|ref|YP_003175752.1| - 1.4 9.1 0.1 1.4 9.1 0.1 2.3 2 0 0 2 2 2 0 C4-type zinc ribbon domain zf-LITAF-like PF10601.9 gi|257372978|ref|YP_003175752.1| - 7.6 6.9 6.1 9.4 6.6 2.6 2.7 2 1 0 2 2 2 0 LITAF-like zinc ribbon domain Pkinase PF00069.25 gi|257372979|ref|YP_003175753.1| - 6.1e-31 107.7 0.0 7.8e-31 107.4 0.0 1.1 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|257372979|ref|YP_003175753.1| - 3.4e-24 85.5 0.0 4.4e-24 85.2 0.0 1.0 1 0 0 1 1 1 1 Protein tyrosine kinase Kinase-like PF14531.6 gi|257372979|ref|YP_003175753.1| - 0.099 11.9 0.0 0.13 11.6 0.0 1.1 1 0 0 1 1 1 0 Kinase-like PQQ_3 PF13570.6 gi|257372980|ref|YP_003175754.1| - 1.2e-64 213.4 56.2 1.7e-11 44.2 1.8 9.1 9 0 0 9 9 9 8 PQQ-like domain PQQ_2 PF13360.6 gi|257372980|ref|YP_003175754.1| - 4.5e-54 183.5 32.8 1.4e-23 83.7 7.7 4.0 2 1 2 4 4 4 3 PQQ-like domain PQQ PF01011.21 gi|257372980|ref|YP_003175754.1| - 4.1e-44 146.5 22.3 4.3e-07 29.5 0.1 8.4 8 0 0 8 8 8 7 PQQ enzyme repeat Pkinase PF00069.25 gi|257372980|ref|YP_003175754.1| - 4.2e-25 88.6 0.0 6.3e-25 88.0 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|257372980|ref|YP_003175754.1| - 5.5e-13 48.8 0.0 8.7e-13 48.1 0.0 1.3 1 0 0 1 1 1 1 Protein tyrosine kinase AAA_31 PF13614.6 gi|257372981|ref|YP_003175755.1| - 8.7e-22 77.9 0.0 1.2e-21 77.4 0.0 1.1 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|257372981|ref|YP_003175755.1| - 2.5e-16 59.9 0.0 3.6e-16 59.4 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|257372981|ref|YP_003175755.1| - 5.4e-09 35.9 0.1 3.4e-08 33.2 0.1 1.9 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase MipZ PF09140.11 gi|257372981|ref|YP_003175755.1| - 1e-06 28.3 0.4 6.9e-05 22.3 0.2 2.3 1 1 0 2 2 2 1 ATPase MipZ CBP_BcsQ PF06564.12 gi|257372981|ref|YP_003175755.1| - 2.1e-06 27.4 0.0 3.5e-06 26.7 0.0 1.3 1 0 0 1 1 1 1 Cellulose biosynthesis protein BcsQ CLP1_P PF16575.5 gi|257372981|ref|YP_003175755.1| - 0.00033 20.5 0.0 0.0006 19.7 0.0 1.3 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop ArsA_ATPase PF02374.15 gi|257372981|ref|YP_003175755.1| - 0.001 18.4 0.1 0.002 17.4 0.1 1.6 1 1 0 1 1 1 1 Anion-transporting ATPase Fer4_NifH PF00142.18 gi|257372981|ref|YP_003175755.1| - 0.0029 17.1 0.0 0.0074 15.8 0.0 1.7 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family SRP54 PF00448.22 gi|257372981|ref|YP_003175755.1| - 0.0066 16.1 0.0 0.013 15.2 0.0 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_24 PF13479.6 gi|257372981|ref|YP_003175755.1| - 0.02 14.6 0.0 0.069 12.9 0.0 2.0 2 1 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|257372981|ref|YP_003175755.1| - 0.026 14.2 0.0 0.048 13.4 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein DUF3567 PF12091.8 gi|257372981|ref|YP_003175755.1| - 0.052 13.7 0.0 0.13 12.4 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3567) ATP_bind_1 PF03029.17 gi|257372981|ref|YP_003175755.1| - 0.073 12.8 0.0 0.15 11.9 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_18 PF13238.6 gi|257372981|ref|YP_003175755.1| - 0.085 13.4 0.0 0.2 12.2 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|257372981|ref|YP_003175755.1| - 0.097 12.7 0.0 0.31 11.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|257372981|ref|YP_003175755.1| - 0.1 12.2 2.0 0.28 10.7 0.6 2.4 2 1 0 2 2 2 0 AAA domain DUF4177 PF13783.6 gi|257372981|ref|YP_003175755.1| - 0.13 12.6 0.0 0.28 11.5 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4177) MLTD_N PF06474.12 gi|257372983|ref|YP_003175757.1| - 0.96 9.7 4.7 0.21 11.8 0.6 2.2 2 0 0 2 2 2 0 MltD lipid attachment motif Pkinase PF00069.25 gi|257372985|ref|YP_003175759.1| - 2.1e-26 92.8 0.0 3.6e-26 92.1 0.0 1.3 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|257372985|ref|YP_003175759.1| - 4e-22 78.7 0.0 6.7e-22 78.0 0.0 1.3 1 0 0 1 1 1 1 Protein tyrosine kinase HEAT_2 PF13646.6 gi|257372985|ref|YP_003175759.1| - 2.2e-06 28.0 39.7 0.015 15.7 4.1 7.4 3 2 5 8 8 8 5 HEAT repeats Adaptin_N PF01602.20 gi|257372985|ref|YP_003175759.1| - 6.6e-06 25.0 0.1 0.039 12.5 0.2 2.7 2 1 0 2 2 2 2 Adaptin N terminal region Cnd1 PF12717.7 gi|257372985|ref|YP_003175759.1| - 0.00031 20.8 1.3 0.4 10.7 0.1 3.8 3 1 1 4 4 4 2 non-SMC mitotic condensation complex subunit 1 HEAT PF02985.22 gi|257372985|ref|YP_003175759.1| - 0.0015 18.6 2.7 9.2 6.8 0.1 5.5 4 0 0 4 4 4 1 HEAT repeat RTP1_C1 PF10363.9 gi|257372985|ref|YP_003175759.1| - 0.024 14.8 0.0 8.8 6.6 0.0 3.9 4 1 0 4 4 4 0 Required for nuclear transport of RNA pol II C-terminus 1 EH_Signature PF15611.6 gi|257372985|ref|YP_003175759.1| - 2.3 7.6 9.6 5.4 6.3 7.7 2.5 2 1 0 2 2 2 0 EH_Signature domain HEAT_EZ PF13513.6 gi|257372985|ref|YP_003175759.1| - 3.3 8.3 16.1 7 7.3 0.2 5.7 5 0 0 5 5 5 0 HEAT-like repeat Asp_protease_2 PF13650.6 gi|257372986|ref|YP_003175760.1| - 3.6e-05 24.3 1.3 5.5e-05 23.7 1.3 1.3 1 0 0 1 1 1 1 Aspartyl protease Zn_protease PF05618.11 gi|257372986|ref|YP_003175760.1| - 0.00025 20.9 0.1 0.18 11.7 0.0 2.1 1 1 1 2 2 2 2 Putative ATP-dependant zinc protease gag-asp_proteas PF13975.6 gi|257372986|ref|YP_003175760.1| - 0.0014 19.2 0.7 0.0021 18.6 0.7 1.2 1 0 0 1 1 1 1 gag-polyprotein putative aspartyl protease Microcephalin PF12258.8 gi|257372986|ref|YP_003175760.1| - 0.021 14.1 0.0 0.028 13.7 0.0 1.1 1 0 0 1 1 1 0 Microcephalin protein UvrD-helicase PF00580.21 gi|257372988|ref|YP_003175762.1| - 1.1e-15 58.1 0.0 2e-15 57.2 0.0 1.3 1 1 0 1 1 1 1 UvrD/REP helicase N-terminal domain UvrD_C_2 PF13538.6 gi|257372988|ref|YP_003175762.1| - 5.7e-09 35.7 1.1 0.00011 21.9 1.1 2.9 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain AAA_19 PF13245.6 gi|257372988|ref|YP_003175762.1| - 1.1e-08 35.5 0.0 6.5e-08 33.0 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|257372988|ref|YP_003175762.1| - 6e-08 32.6 1.9 0.00019 21.2 0.2 2.7 2 0 0 2 2 2 2 AAA domain PDDEXK_1 PF12705.7 gi|257372988|ref|YP_003175762.1| - 2.6e-06 27.6 0.1 8e-05 22.7 0.0 2.7 2 0 0 2 2 2 1 PD-(D/E)XK nuclease superfamily UvrD_C PF13361.6 gi|257372988|ref|YP_003175762.1| - 1.4e-05 24.7 0.0 9.1e-05 22.0 0.0 2.0 1 1 0 1 1 1 1 UvrD-like helicase C-terminal domain AAA_22 PF13401.6 gi|257372988|ref|YP_003175762.1| - 0.0012 19.1 0.6 2.4 8.4 0.3 3.2 2 2 0 2 2 2 2 AAA domain Viral_helicase1 PF01443.18 gi|257372988|ref|YP_003175762.1| - 0.27 10.9 1.7 14 5.4 0.0 3.2 3 0 0 3 3 3 0 Viral (Superfamily 1) RNA helicase Peripla_BP_2 PF01497.18 gi|257372989|ref|YP_003175763.1| - 7.3e-14 51.9 0.0 1e-13 51.4 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein PAS_4 PF08448.10 gi|257372990|ref|YP_003175764.1| - 5.8e-55 184.2 22.5 1.4e-15 57.5 0.3 6.6 6 1 0 6 6 5 4 PAS fold PAS PF00989.25 gi|257372990|ref|YP_003175764.1| - 3.1e-44 149.6 5.4 5e-19 68.4 0.0 6.2 5 1 0 5 5 5 5 PAS fold PAS_9 PF13426.7 gi|257372990|ref|YP_003175764.1| - 1.7e-33 115.0 3.1 1.9e-11 44.1 0.0 5.7 5 0 0 5 5 5 5 PAS domain PAS_3 PF08447.12 gi|257372990|ref|YP_003175764.1| - 3.2e-22 78.6 2.6 3.4e-11 43.3 0.1 4.4 4 0 0 4 4 4 2 PAS fold PAS_8 PF13188.7 gi|257372990|ref|YP_003175764.1| - 8.7e-19 67.1 1.7 1.4e-06 28.2 0.0 5.4 5 0 0 5 5 5 3 PAS domain GAF_2 PF13185.6 gi|257372990|ref|YP_003175764.1| - 1.4e-18 67.6 2.0 1.4e-09 38.3 0.5 3.7 2 0 0 2 2 2 2 GAF domain HATPase_c PF02518.26 gi|257372990|ref|YP_003175764.1| - 5e-17 62.4 0.2 1.1e-16 61.3 0.2 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.24 gi|257372990|ref|YP_003175764.1| - 1.3e-14 54.3 0.0 3.3e-14 53.0 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain GAF_3 PF13492.6 gi|257372990|ref|YP_003175764.1| - 1.3e-14 54.6 0.0 1e-05 25.9 0.0 3.8 4 0 0 4 4 4 2 GAF domain HisKA PF00512.25 gi|257372990|ref|YP_003175764.1| - 1.1e-11 44.5 0.1 1.1e-11 44.5 0.1 3.9 4 0 0 4 4 4 1 His Kinase A (phospho-acceptor) domain GAF PF01590.26 gi|257372990|ref|YP_003175764.1| - 1.1e-08 35.7 0.0 2.8e-07 31.2 0.0 3.0 3 0 0 3 3 3 1 GAF domain PAS_10 PF13596.6 gi|257372990|ref|YP_003175764.1| - 0.0088 16.6 0.0 0.22 12.2 0.0 3.3 4 0 0 4 4 3 1 PAS domain OKR_DC_1_N PF03709.15 gi|257372990|ref|YP_003175764.1| - 0.016 15.4 0.1 0.051 13.9 0.1 1.9 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain HATPase_c_3 PF13589.6 gi|257372990|ref|YP_003175764.1| - 0.06 13.2 0.0 0.14 12.0 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ZnuA PF01297.17 gi|257372992|ref|YP_003175766.1| - 6.5e-41 140.4 0.1 8.1e-41 140.1 0.1 1.0 1 0 0 1 1 1 1 Zinc-uptake complex component A periplasmic ABC_tran PF00005.27 gi|257372993|ref|YP_003175767.1| - 1.5e-30 106.5 0.0 2e-30 106.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|257372993|ref|YP_003175767.1| - 1.5e-10 41.4 0.1 0.00028 20.8 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|257372993|ref|YP_003175767.1| - 7.4e-05 22.4 0.0 0.00028 20.6 0.0 1.9 2 0 0 2 2 2 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|257372993|ref|YP_003175767.1| - 0.00011 21.7 0.0 0.012 15.1 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|257372993|ref|YP_003175767.1| - 0.0016 18.7 0.0 0.12 12.6 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|257372993|ref|YP_003175767.1| - 0.0029 17.3 0.1 0.0085 15.8 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|257372993|ref|YP_003175767.1| - 0.0059 17.0 0.1 0.009 16.4 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.6 gi|257372993|ref|YP_003175767.1| - 0.014 15.1 0.0 0.019 14.7 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain MeaB PF03308.16 gi|257372993|ref|YP_003175767.1| - 0.015 14.3 0.1 0.022 13.7 0.1 1.2 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_23 PF13476.6 gi|257372993|ref|YP_003175767.1| - 0.02 15.4 0.0 0.032 14.7 0.0 1.2 1 0 0 1 1 1 0 AAA domain ABC_ATPase PF09818.9 gi|257372993|ref|YP_003175767.1| - 0.021 13.6 0.1 3.6 6.3 0.0 3.0 2 1 0 2 2 2 0 Predicted ATPase of the ABC class SbcCD_C PF13558.6 gi|257372993|ref|YP_003175767.1| - 0.034 14.4 0.6 0.92 9.8 0.6 2.4 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_33 PF13671.6 gi|257372993|ref|YP_003175767.1| - 0.049 13.8 0.0 0.098 12.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain DUF3987 PF13148.6 gi|257372993|ref|YP_003175767.1| - 0.051 12.6 0.0 0.076 12.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) Spore_IV_A PF09547.10 gi|257372993|ref|YP_003175767.1| - 0.057 12.4 0.0 0.08 11.9 0.0 1.1 1 0 0 1 1 1 0 Stage IV sporulation protein A (spore_IV_A) NTPase_1 PF03266.15 gi|257372993|ref|YP_003175767.1| - 0.097 12.6 0.0 0.57 10.1 0.0 1.9 2 0 0 2 2 2 0 NTPase DUF87 PF01935.17 gi|257372993|ref|YP_003175767.1| - 0.1 12.7 0.0 0.18 11.9 0.0 1.5 1 0 0 1 1 1 0 Helicase HerA, central domain NACHT PF05729.12 gi|257372993|ref|YP_003175767.1| - 0.13 12.2 0.0 0.2 11.6 0.0 1.3 1 0 0 1 1 1 0 NACHT domain MMR_HSR1 PF01926.23 gi|257372993|ref|YP_003175767.1| - 0.14 12.2 0.0 0.27 11.3 0.0 1.4 1 0 0 1 1 1 0 50S ribosome-binding GTPase ABC-3 PF00950.17 gi|257372994|ref|YP_003175768.1| - 5.2e-56 190.0 40.3 6.1e-56 189.8 40.3 1.0 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.18 gi|257372994|ref|YP_003175768.1| - 0.034 13.1 40.3 0.09 11.8 40.3 1.8 1 1 0 1 1 1 0 FecCD transport family DUF2407_C PF13373.6 gi|257372994|ref|YP_003175768.1| - 1.2 9.3 4.8 0.31 11.2 1.1 1.9 2 0 0 2 2 2 0 DUF2407 C-terminal domain SLATT_6 PF18169.1 gi|257372994|ref|YP_003175768.1| - 6.7 6.3 10.5 6.7 6.3 1.1 2.7 3 0 0 3 3 3 0 SMODS and SLOG-associating 2TM effector domain 6 Phage_int_SAM_1 PF02899.17 gi|257372995|ref|YP_003175769.1| - 0.00014 22.0 1.3 0.067 13.5 0.1 3.6 2 1 2 4 4 4 2 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 gi|257372995|ref|YP_003175769.1| - 0.0031 17.8 0.0 0.012 15.9 0.0 1.9 2 0 0 2 2 2 1 Phage integrase SAM-like domain baeRF_family3 PF18845.1 gi|257372995|ref|YP_003175769.1| - 0.06 13.6 0.7 0.43 10.8 0.1 2.2 2 0 0 2 2 2 0 Bacterial archaeo-eukaryotic release factor family 3 Phage_int_SAM_4 PF13495.6 gi|257372995|ref|YP_003175769.1| - 0.15 12.6 0.1 1.4 9.5 0.1 2.2 1 1 1 2 2 2 0 Phage integrase, N-terminal SAM-like domain DDE_Tnp_IS1595 PF12762.7 gi|257372996|ref|YP_003175770.1| - 2.9e-22 79.3 0.0 4.1e-22 78.8 0.0 1.2 1 0 0 1 1 1 1 ISXO2-like transposase domain Zn_Tnp_IS1595 PF12760.7 gi|257372996|ref|YP_003175770.1| - 3.9e-10 39.5 0.9 8e-10 38.5 0.9 1.6 1 0 0 1 1 1 1 Transposase zinc-ribbon domain DUF2089 PF09862.9 gi|257372996|ref|YP_003175770.1| - 5.9e-07 29.5 0.0 1e-06 28.8 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2089) Zn_Tnp_IS1 PF03811.13 gi|257372996|ref|YP_003175770.1| - 1.5e-05 24.6 4.0 3.8e-05 23.3 4.0 1.7 1 0 0 1 1 1 1 InsA N-terminal domain TackOD1 PF18551.1 gi|257372996|ref|YP_003175770.1| - 0.007 16.1 0.2 0.011 15.4 0.2 1.2 1 0 0 1 1 1 1 Thaumarchaeal output domain 1 Zn-ribbon_8 PF09723.10 gi|257372996|ref|YP_003175770.1| - 0.017 15.2 0.5 3.1 8.0 0.1 2.5 2 0 0 2 2 2 0 Zinc ribbon domain HTH_23 PF13384.6 gi|257372996|ref|YP_003175770.1| - 0.023 14.5 0.0 0.082 12.7 0.0 1.9 1 0 0 1 1 1 0 Homeodomain-like domain HTH_29 PF13551.6 gi|257372996|ref|YP_003175770.1| - 0.023 14.7 0.1 0.094 12.7 0.1 2.0 1 0 0 1 1 1 0 Winged helix-turn helix ADK_lid PF05191.14 gi|257372996|ref|YP_003175770.1| - 0.041 13.9 2.6 0.041 13.9 0.1 2.1 2 0 0 2 2 2 0 Adenylate kinase, active site lid GerE PF00196.19 gi|257372996|ref|YP_003175770.1| - 0.041 13.4 0.0 0.085 12.4 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family zf-C4_Topoisom PF01396.19 gi|257372996|ref|YP_003175770.1| - 0.047 13.5 1.3 0.094 12.5 1.3 1.5 1 0 0 1 1 1 0 Topoisomerase DNA binding C4 zinc finger Sigma70_r4_2 PF08281.12 gi|257372996|ref|YP_003175770.1| - 0.099 12.3 0.0 0.3 10.8 0.0 1.8 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_11 PF08279.12 gi|257372996|ref|YP_003175770.1| - 0.1 12.6 0.0 0.2 11.6 0.0 1.5 1 0 0 1 1 1 0 HTH domain zinc-ribbons_6 PF07191.12 gi|257372996|ref|YP_003175770.1| - 0.11 12.4 0.3 0.2 11.6 0.3 1.4 1 0 0 1 1 1 0 zinc-ribbons Lar_restr_allev PF14354.6 gi|257372996|ref|YP_003175770.1| - 0.12 12.8 0.1 0.26 11.7 0.1 1.5 1 0 0 1 1 1 0 Restriction alleviation protein Lar zf-Dof PF02701.15 gi|257372996|ref|YP_003175770.1| - 0.18 12.0 3.5 0.37 11.0 3.5 1.5 1 0 0 1 1 1 0 Dof domain, zinc finger zf-C2H2_4 PF13894.6 gi|257372996|ref|YP_003175770.1| - 0.46 11.5 3.6 1.1 10.3 0.2 3.1 3 0 0 3 3 3 0 C2H2-type zinc finger zf-ISL3 PF14690.6 gi|257372996|ref|YP_003175770.1| - 0.84 10.4 5.8 7.6 7.3 0.2 2.9 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn_ribbon_recom PF13408.6 gi|257372996|ref|YP_003175770.1| - 2 9.0 6.4 2.3 8.8 4.8 2.0 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain zf-C2HC_2 PF13913.6 gi|257372996|ref|YP_003175770.1| - 4.9 7.2 8.0 0.23 11.4 1.4 2.1 2 0 0 2 2 2 0 zinc-finger of a C2HC-type AAA_assoc_2 PF16193.5 gi|257372997|ref|YP_003175771.1| - 0.087 13.2 0.7 0.41 11.0 0.7 2.1 1 0 0 1 1 1 0 AAA C-terminal domain CBM_4_9 PF02018.17 gi|257372997|ref|YP_003175771.1| - 1.4 9.1 6.7 0.8 10.0 0.1 3.7 3 0 0 3 3 3 0 Carbohydrate binding domain Metal_resist PF13801.6 gi|257372998|ref|YP_003175772.1| - 0.029 14.6 0.1 0.044 14.0 0.1 1.3 1 0 0 1 1 1 0 Heavy-metal resistance DDE_Tnp_1 PF01609.21 gi|257372999|ref|YP_003175773.1| - 6.8e-14 52.0 0.8 2.8e-13 50.0 0.8 1.9 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.6 gi|257372999|ref|YP_003175773.1| - 0.00078 19.8 0.0 0.0015 18.8 0.0 1.5 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 gi|257372999|ref|YP_003175773.1| - 0.062 13.3 0.0 0.09 12.8 0.0 1.2 1 0 0 1 1 1 0 Transposase DDE domain SHOCT PF09851.9 gi|257373000|ref|YP_003175774.1| - 2.7e-07 30.1 0.1 4.1e-07 29.5 0.1 1.3 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.11 gi|257373000|ref|YP_003175774.1| - 1.3e-05 25.1 3.6 2.6e-05 24.2 3.3 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF1707) GvpG PF05120.12 gi|257373000|ref|YP_003175774.1| - 0.037 14.0 1.1 0.097 12.7 1.1 1.7 1 1 0 1 1 1 0 Gas vesicle protein G DUF302 PF03625.14 gi|257373001|ref|YP_003175775.1| - 1.4e-17 63.3 0.0 2.4e-17 62.6 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF302 Methyltransf_11 PF08241.12 gi|257373002|ref|YP_003175776.1| - 2.8e-17 63.2 0.1 4.3e-17 62.5 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|257373002|ref|YP_003175776.1| - 7.9e-14 52.1 0.1 1.5e-13 51.2 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|257373002|ref|YP_003175776.1| - 1.8e-07 31.1 0.0 2.2e-07 30.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|257373002|ref|YP_003175776.1| - 7.2e-05 22.2 0.0 0.0001 21.7 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|257373002|ref|YP_003175776.1| - 0.00014 21.8 0.0 0.00025 20.9 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.15 gi|257373002|ref|YP_003175776.1| - 0.0024 17.8 0.0 0.0053 16.6 0.0 1.7 1 1 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_12 PF08242.12 gi|257373002|ref|YP_003175776.1| - 0.0062 17.3 0.1 0.012 16.3 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain DREV PF05219.12 gi|257373002|ref|YP_003175776.1| - 0.081 12.0 0.0 0.11 11.6 0.0 1.2 1 0 0 1 1 1 0 DREV methyltransferase Methyltransf_2 PF00891.18 gi|257373002|ref|YP_003175776.1| - 0.14 11.4 0.1 0.31 10.3 0.1 1.6 1 1 0 1 1 1 0 O-methyltransferase domain IucA_IucC PF04183.12 gi|257373003|ref|YP_003175777.1| - 9.6e-70 234.8 0.0 1.6e-69 234.1 0.0 1.4 1 0 0 1 1 1 1 IucA / IucC family FhuF PF06276.12 gi|257373003|ref|YP_003175777.1| - 8.6e-38 130.3 0.0 1.6e-37 129.5 0.0 1.5 1 0 0 1 1 1 1 Ferric iron reductase FhuF-like transporter Aminotran_3 PF00202.21 gi|257373004|ref|YP_003175778.1| - 2.3e-88 296.6 0.0 2.7e-88 296.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Prim-Pol PF09250.11 gi|257373004|ref|YP_003175778.1| - 0.032 14.6 0.4 0.18 12.1 0.1 2.2 2 0 0 2 2 2 0 Bifunctional DNA primase/polymerase, N-terminal Aminotran_1_2 PF00155.21 gi|257373004|ref|YP_003175778.1| - 0.045 12.9 0.0 0.2 10.8 0.0 1.9 2 0 0 2 2 2 0 Aminotransferase class I and II Pyridoxal_deC PF00282.19 gi|257373005|ref|YP_003175779.1| - 3.1e-54 184.1 0.0 3.9e-54 183.8 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.19 gi|257373005|ref|YP_003175779.1| - 0.0047 15.9 0.0 0.011 14.7 0.0 1.5 2 0 0 2 2 2 1 Aminotransferase class-V IucA_IucC PF04183.12 gi|257373006|ref|YP_003175780.1| - 2.5e-58 197.5 0.0 3.4e-58 197.0 0.0 1.2 1 0 0 1 1 1 1 IucA / IucC family FhuF PF06276.12 gi|257373006|ref|YP_003175780.1| - 1.2e-34 120.0 0.2 2.1e-34 119.3 0.2 1.4 1 0 0 1 1 1 1 Ferric iron reductase FhuF-like transporter Acetyltransf_8 PF13523.6 gi|257373007|ref|YP_003175781.1| - 2.1e-45 154.0 0.2 2.6e-45 153.7 0.2 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|257373007|ref|YP_003175781.1| - 5.8e-09 36.7 0.0 1.2e-08 35.8 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|257373007|ref|YP_003175781.1| - 0.0043 17.3 0.0 0.0058 16.9 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family FR47 PF08445.10 gi|257373007|ref|YP_003175781.1| - 0.035 14.1 0.0 0.089 12.8 0.0 1.7 2 0 0 2 2 2 0 FR47-like protein PG_binding_2 PF08823.11 gi|257373007|ref|YP_003175781.1| - 0.08 13.3 0.0 0.14 12.4 0.0 1.4 1 0 0 1 1 1 0 Putative peptidoglycan binding domain K_oxygenase PF13434.6 gi|257373008|ref|YP_003175782.1| - 1.9e-109 365.9 0.0 2.3e-109 365.7 0.0 1.0 1 0 0 1 1 1 1 L-lysine 6-monooxygenase (NADPH-requiring) Pyr_redox_2 PF07992.14 gi|257373008|ref|YP_003175782.1| - 3e-07 30.0 0.0 0.0007 18.9 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|257373008|ref|YP_003175782.1| - 0.00084 19.3 0.4 2.5 8.1 0.0 3.2 3 0 0 3 3 3 3 FAD-NAD(P)-binding IucA_IucC PF04183.12 gi|257373009|ref|YP_003175783.1| - 1.7e-56 191.5 0.0 2.6e-56 190.8 0.0 1.3 1 0 0 1 1 1 1 IucA / IucC family FhuF PF06276.12 gi|257373009|ref|YP_003175783.1| - 3.2e-33 115.5 0.1 6.2e-33 114.5 0.1 1.5 1 0 0 1 1 1 1 Ferric iron reductase FhuF-like transporter Polysacc_deac_1 PF01522.21 gi|257373010|ref|YP_003175784.1| - 1e-22 80.3 0.0 1.6e-22 79.7 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide deacetylase DUF2334 PF10096.9 gi|257373010|ref|YP_003175784.1| - 0.0086 15.8 0.0 0.012 15.3 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2334) MatE PF01554.18 gi|257373012|ref|YP_003175786.1| - 7.4e-60 201.3 31.5 1.5e-34 119.0 14.8 2.2 2 0 0 2 2 2 2 MatE Polysacc_synt_C PF14667.6 gi|257373012|ref|YP_003175786.1| - 1.1e-05 25.6 20.8 1.1e-05 25.6 20.8 4.6 3 2 0 3 3 3 2 Polysaccharide biosynthesis C-terminal domain Peripla_BP_2 PF01497.18 gi|257373013|ref|YP_003175787.1| - 4.6e-24 85.3 0.0 8.1e-24 84.5 0.0 1.4 1 1 0 1 1 1 1 Periplasmic binding protein Osmo_CC PF08946.10 gi|257373013|ref|YP_003175787.1| - 0.073 13.3 0.0 0.19 12.0 0.0 1.7 1 0 0 1 1 1 0 Osmosensory transporter coiled coil Com_YlbF PF06133.11 gi|257373015|ref|YP_003175789.1| - 1.4e-17 64.2 15.9 1.6e-17 64.0 15.9 1.1 1 0 0 1 1 1 1 Control of competence regulator ComK, YlbF/YmcA OmpH PF03938.14 gi|257373015|ref|YP_003175789.1| - 0.4 11.0 14.8 0.58 10.5 14.8 1.3 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) V_ATPase_I PF01496.19 gi|257373015|ref|YP_003175789.1| - 1.4 6.7 6.8 1.5 6.6 6.8 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Complex1_LYR_2 PF13233.6 gi|257373015|ref|YP_003175789.1| - 1.8 9.4 9.2 16 6.4 9.2 2.1 1 1 0 1 1 1 0 Complex1_LYR-like DivIC PF04977.15 gi|257373015|ref|YP_003175789.1| - 3 7.7 14.1 40 4.1 12.8 2.8 1 1 1 2 2 2 0 Septum formation initiator FUSC PF04632.12 gi|257373015|ref|YP_003175789.1| - 9.7 4.6 6.6 9.9 4.6 6.6 1.0 1 0 0 1 1 1 0 Fusaric acid resistance protein family ArsA_ATPase PF02374.15 gi|257373016|ref|YP_003175790.1| - 8e-161 534.3 0.0 1.6e-87 293.5 0.0 4.0 2 2 1 3 3 3 3 Anion-transporting ATPase AAA_31 PF13614.6 gi|257373016|ref|YP_003175790.1| - 2.5e-22 79.6 0.0 2.1e-10 40.8 0.0 2.4 2 0 0 2 2 2 2 AAA domain CbiA PF01656.23 gi|257373016|ref|YP_003175790.1| - 3.4e-21 75.6 0.0 8.3e-10 38.8 0.0 3.3 2 1 0 2 2 2 2 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|257373016|ref|YP_003175790.1| - 1.2e-13 51.1 1.0 6.1e-06 25.9 0.2 3.3 2 1 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase Fer4_NifH PF00142.18 gi|257373016|ref|YP_003175790.1| - 8.7e-09 35.2 0.0 0.002 17.6 0.0 2.4 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_16 PF13191.6 gi|257373016|ref|YP_003175790.1| - 8.4e-08 32.8 0.0 0.0022 18.4 0.0 2.4 2 0 0 2 2 2 2 AAA ATPase domain NB-ARC PF00931.22 gi|257373016|ref|YP_003175790.1| - 2.1e-07 30.4 0.0 0.00083 18.6 0.0 2.3 2 0 0 2 2 2 2 NB-ARC domain MeaB PF03308.16 gi|257373016|ref|YP_003175790.1| - 4.1e-07 29.3 0.1 0.00042 19.4 0.0 3.1 3 0 0 3 3 3 1 Methylmalonyl Co-A mutase-associated GTPase MeaB SRP54 PF00448.22 gi|257373016|ref|YP_003175790.1| - 3.3e-06 26.9 4.5 1.2 8.7 0.3 4.3 4 0 0 4 4 4 2 SRP54-type protein, GTPase domain APS_kinase PF01583.20 gi|257373016|ref|YP_003175790.1| - 5.5e-06 26.4 0.1 0.019 14.8 0.1 2.4 2 0 0 2 2 2 2 Adenylylsulphate kinase CBP_BcsQ PF06564.12 gi|257373016|ref|YP_003175790.1| - 5.5e-06 26.0 0.0 0.0055 16.2 0.0 2.4 2 1 0 2 2 2 2 Cellulose biosynthesis protein BcsQ PhoH PF02562.16 gi|257373016|ref|YP_003175790.1| - 1.1e-05 24.9 0.3 0.024 14.1 0.1 2.8 2 2 0 2 2 2 2 PhoH-like protein ATPase PF06745.13 gi|257373016|ref|YP_003175790.1| - 2.9e-05 23.5 0.2 0.073 12.4 0.0 2.4 2 0 0 2 2 2 2 KaiC NTPase_1 PF03266.15 gi|257373016|ref|YP_003175790.1| - 0.00015 21.7 0.5 0.14 12.1 0.2 3.2 3 1 0 3 3 3 1 NTPase AAA_24 PF13479.6 gi|257373016|ref|YP_003175790.1| - 0.0002 21.2 4.6 0.00072 19.3 0.1 3.3 2 2 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 gi|257373016|ref|YP_003175790.1| - 0.0002 21.3 0.1 0.24 11.3 0.0 2.5 2 0 0 2 2 2 2 RsgA GTPase AAA_25 PF13481.6 gi|257373016|ref|YP_003175790.1| - 0.00023 20.8 11.6 0.022 14.3 0.0 3.8 3 1 0 3 3 2 1 AAA domain AAA_29 PF13555.6 gi|257373016|ref|YP_003175790.1| - 0.00045 19.9 0.1 1.2 9.0 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain IstB_IS21 PF01695.17 gi|257373016|ref|YP_003175790.1| - 0.00048 19.9 0.0 0.54 10.0 0.0 2.3 2 0 0 2 2 2 2 IstB-like ATP binding protein RNA_helicase PF00910.22 gi|257373016|ref|YP_003175790.1| - 0.00068 20.0 0.0 1.5 9.2 0.0 2.6 2 0 0 2 2 2 2 RNA helicase ATP_bind_1 PF03029.17 gi|257373016|ref|YP_003175790.1| - 0.00073 19.4 0.1 0.34 10.7 0.1 2.5 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein AAA_30 PF13604.6 gi|257373016|ref|YP_003175790.1| - 0.0021 17.8 2.4 1.1 8.9 0.9 3.2 3 1 1 4 4 4 1 AAA domain Helicase_RecD PF05127.14 gi|257373016|ref|YP_003175790.1| - 0.0066 16.3 0.0 1.2 8.9 0.0 2.3 2 0 0 2 2 2 1 Helicase PIF1 PF05970.14 gi|257373016|ref|YP_003175790.1| - 0.0074 15.5 0.0 0.73 8.9 0.0 2.2 2 0 0 2 2 2 1 PIF1-like helicase MipZ PF09140.11 gi|257373016|ref|YP_003175790.1| - 0.0078 15.5 7.6 0.84 8.9 0.2 4.0 4 0 0 4 4 4 1 ATPase MipZ AAA PF00004.29 gi|257373016|ref|YP_003175790.1| - 0.0084 16.5 0.2 5.2 7.5 0.0 2.8 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 gi|257373016|ref|YP_003175790.1| - 0.011 16.2 0.4 1.9 9.0 0.1 2.9 2 1 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|257373016|ref|YP_003175790.1| - 0.014 15.5 0.0 2.1 8.5 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|257373016|ref|YP_003175790.1| - 0.015 15.6 0.0 3.6 7.9 0.0 3.0 2 1 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|257373016|ref|YP_003175790.1| - 0.019 15.5 0.0 4.3 7.9 0.0 2.5 2 0 0 2 2 2 0 ABC transporter AAA_7 PF12775.7 gi|257373016|ref|YP_003175790.1| - 0.022 14.3 0.0 3.1 7.3 0.0 2.4 2 0 0 2 2 2 0 P-loop containing dynein motor region RuvB_N PF05496.12 gi|257373016|ref|YP_003175790.1| - 0.041 13.6 0.0 5.2 6.8 0.0 2.5 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain Thymidylate_kin PF02223.17 gi|257373016|ref|YP_003175790.1| - 0.044 13.5 0.1 5.4 6.7 0.1 2.6 2 0 0 2 2 2 0 Thymidylate kinase AAA_5 PF07728.14 gi|257373016|ref|YP_003175790.1| - 0.047 13.7 0.1 3 7.8 0.0 2.9 2 2 0 2 2 2 0 AAA domain (dynein-related subfamily) T2SSE PF00437.20 gi|257373016|ref|YP_003175790.1| - 0.047 12.7 0.1 2.4 7.2 0.0 2.2 2 0 0 2 2 2 0 Type II/IV secretion system protein NACHT PF05729.12 gi|257373016|ref|YP_003175790.1| - 0.083 12.8 0.4 4.5 7.2 0.1 2.4 2 0 0 2 2 2 0 NACHT domain Zeta_toxin PF06414.12 gi|257373016|ref|YP_003175790.1| - 0.12 11.6 0.1 7.6 5.8 0.0 2.7 3 0 0 3 3 2 0 Zeta toxin VirC1 PF07015.11 gi|257373016|ref|YP_003175790.1| - 0.16 11.3 1.4 24 4.1 0.1 3.1 3 0 0 3 3 3 0 VirC1 protein CLP1_P PF16575.5 gi|257373016|ref|YP_003175790.1| - 0.2 11.4 0.1 5.6 6.7 0.0 2.3 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop CHIP_TPR_N PF18391.1 gi|257373016|ref|YP_003175790.1| - 6.2 7.7 6.5 2.1 9.2 2.4 2.2 2 0 0 2 2 2 0 CHIP N-terminal tetratricopeptide repeat domain ArsD PF06953.11 gi|257373017|ref|YP_003175791.1| - 1.2e-29 103.2 0.0 1.3e-29 103.1 0.0 1.0 1 0 0 1 1 1 1 Arsenical resistance operon trans-acting repressor ArsD DpaA_N PF16924.5 gi|257373017|ref|YP_003175791.1| - 0.12 12.5 0.0 0.14 12.2 0.0 1.2 1 0 0 1 1 1 0 Dipicolinate synthase subunit A N-terminal domain HTH_20 PF12840.7 gi|257373018|ref|YP_003175792.1| - 3.3e-12 46.3 0.2 1.1e-11 44.6 0.2 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|257373018|ref|YP_003175792.1| - 6.5e-11 41.9 0.0 1.3e-10 41.0 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|257373018|ref|YP_003175792.1| - 9.8e-05 22.2 0.0 0.00016 21.6 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|257373018|ref|YP_003175792.1| - 0.00064 20.2 0.0 0.0012 19.2 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|257373018|ref|YP_003175792.1| - 0.00091 19.1 0.1 0.0018 18.2 0.1 1.6 1 1 0 1 1 1 1 MarR family TrmB PF01978.19 gi|257373018|ref|YP_003175792.1| - 0.0014 18.4 0.0 0.0032 17.3 0.0 1.7 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF4423 PF14394.6 gi|257373018|ref|YP_003175792.1| - 0.0014 18.3 0.0 0.002 17.9 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) GntR PF00392.21 gi|257373018|ref|YP_003175792.1| - 0.0026 17.4 0.0 0.0042 16.7 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_34 PF13601.6 gi|257373018|ref|YP_003175792.1| - 0.0035 17.5 0.0 0.0054 16.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain PaaX PF07848.12 gi|257373018|ref|YP_003175792.1| - 0.011 15.9 0.0 0.018 15.3 0.0 1.3 1 0 0 1 1 1 0 PaaX-like protein HTH_Crp_2 PF13545.6 gi|257373018|ref|YP_003175792.1| - 0.012 15.6 0.1 0.042 13.8 0.1 2.2 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain RP-C PF03428.13 gi|257373018|ref|YP_003175792.1| - 0.022 14.4 0.2 0.048 13.3 0.0 1.6 2 0 0 2 2 2 0 Replication protein C N-terminal domain Cdc6_C PF09079.11 gi|257373018|ref|YP_003175792.1| - 0.038 14.0 0.1 0.087 12.8 0.0 1.7 2 0 0 2 2 2 0 CDC6, C terminal winged helix domain DUF2250 PF10007.9 gi|257373018|ref|YP_003175792.1| - 0.048 13.8 0.0 0.081 13.0 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Penicillinase_R PF03965.16 gi|257373018|ref|YP_003175792.1| - 0.067 13.5 0.0 0.11 12.9 0.0 1.4 1 0 0 1 1 1 0 Penicillinase repressor PAX PF00292.18 gi|257373018|ref|YP_003175792.1| - 0.086 12.8 0.0 0.12 12.3 0.0 1.2 1 0 0 1 1 1 0 'Paired box' domain DUF480 PF04337.12 gi|257373018|ref|YP_003175792.1| - 0.11 12.6 0.0 0.22 11.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF480 Imm49 PF15575.6 gi|257373020|ref|YP_003175794.1| - 0.00051 19.9 0.0 0.00055 19.8 0.0 1.1 1 0 0 1 1 1 1 Immunity protein 49 Ribonuc_red_lgC PF02867.15 gi|257373021|ref|YP_003175795.1| - 1.5e-88 297.6 0.1 7.9e-33 113.8 0.1 3.0 1 1 2 3 3 3 3 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.21 gi|257373021|ref|YP_003175795.1| - 0.00097 19.1 0.0 0.0032 17.4 0.0 1.9 1 0 0 1 1 1 1 Ribonucleotide reductase, all-alpha domain Ribonuc_red_sm PF00268.21 gi|257373022|ref|YP_003175796.1| - 4e-49 167.6 2.9 4e-49 167.6 2.9 1.9 1 1 1 2 2 2 1 Ribonucleotide reductase, small chain DUF656 PF04920.12 gi|257373022|ref|YP_003175796.1| - 0.13 12.2 0.0 0.35 10.8 0.0 1.6 2 0 0 2 2 2 0 Family of unknown function (DUF656) ATP-cone PF03477.16 gi|257373023|ref|YP_003175797.1| - 2.8e-17 63.0 0.2 3.7e-17 62.7 0.2 1.2 1 0 0 1 1 1 1 ATP cone domain Zn_Tnp_IS1595 PF12760.7 gi|257373023|ref|YP_003175797.1| - 0.00048 20.0 1.7 0.00071 19.5 1.7 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain COMPASS-Shg1 PF05205.12 gi|257373023|ref|YP_003175797.1| - 0.039 14.7 0.1 0.094 13.4 0.1 1.6 1 1 0 1 1 1 0 COMPASS (Complex proteins associated with Set1p) component shg1 zf-ZPR1 PF03367.13 gi|257373023|ref|YP_003175797.1| - 0.039 13.8 2.1 0.15 11.9 2.1 2.0 1 1 0 1 1 1 0 ZPR1 zinc-finger domain Ogr_Delta PF04606.12 gi|257373023|ref|YP_003175797.1| - 0.054 13.5 2.6 0.11 12.5 2.6 1.5 1 0 0 1 1 1 0 Ogr/Delta-like zinc finger AzlD PF05437.12 gi|257373024|ref|YP_003175798.1| - 4.6e-17 62.0 9.3 5.2e-17 61.8 9.3 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport protein (AzlD) PsbX PF06596.11 gi|257373024|ref|YP_003175798.1| - 1.9 8.5 0.1 1.9 8.5 0.1 3.9 5 0 0 5 5 5 0 Photosystem II reaction centre X protein (PsbX) DUF4229 PF14012.6 gi|257373025|ref|YP_003175799.1| - 2.2 8.4 10.5 0.58 10.3 5.6 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4229) Bys1 PF04681.12 gi|257373027|ref|YP_003175801.1| - 0.091 12.7 0.0 0.13 12.2 0.0 1.2 1 0 0 1 1 1 0 Blastomyces yeast-phase-specific protein AbiEi_1 PF09407.10 gi|257373027|ref|YP_003175801.1| - 0.14 12.5 0.1 0.26 11.6 0.1 1.4 1 0 0 1 1 1 0 AbiEi antitoxin C-terminal domain EF-hand_6 PF13405.6 gi|257373032|ref|YP_003175806.1| - 0.042 13.8 7.3 4.4 7.5 0.2 4.5 4 0 0 4 4 4 0 EF-hand domain EF-hand_1 PF00036.32 gi|257373032|ref|YP_003175806.1| - 0.78 9.4 11.9 0.61 9.8 0.1 4.0 5 0 0 5 5 5 0 EF hand EF-hand_7 PF13499.6 gi|257373032|ref|YP_003175806.1| - 1.2 9.6 3.8 8.4 6.9 0.4 3.2 3 1 0 3 3 3 0 EF-hand domain pair Binary_toxB PF03495.14 gi|257373033|ref|YP_003175807.1| - 0.016 15.4 18.4 1.2 9.4 0.2 5.1 4 1 0 4 4 4 0 Clostridial binary toxin B/anthrax toxin PA Ca-binding domain HTH_20 PF12840.7 gi|257373035|ref|YP_003175809.1| - 8.5e-07 28.9 0.1 1.4e-06 28.3 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|257373035|ref|YP_003175809.1| - 0.015 15.1 0.1 0.023 14.5 0.1 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|257373035|ref|YP_003175809.1| - 0.018 14.6 0.0 0.032 13.8 0.0 1.6 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF5100 PF17029.5 gi|257373035|ref|YP_003175809.1| - 0.02 14.7 0.0 0.026 14.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5100) TrmB PF01978.19 gi|257373035|ref|YP_003175809.1| - 0.023 14.6 0.0 0.033 14.1 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Jagunal PF07086.12 gi|257373036|ref|YP_003175810.1| - 0.06 13.4 0.7 0.16 12.0 0.7 1.8 1 1 0 1 1 1 0 Jagunal, ER re-organisation during oogenesis DUF3681 PF12442.8 gi|257373036|ref|YP_003175810.1| - 0.39 11.2 10.0 0.18 12.3 1.9 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3681) DUF1772 PF08592.11 gi|257373036|ref|YP_003175810.1| - 0.59 10.4 4.4 0.58 10.5 3.6 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF1772) SPC12 PF06645.13 gi|257373036|ref|YP_003175810.1| - 0.63 10.2 0.0 0.63 10.2 0.0 2.6 1 1 2 3 3 3 0 Microsomal signal peptidase 12 kDa subunit (SPC12) DHHC PF01529.20 gi|257373036|ref|YP_003175810.1| - 0.78 9.8 2.5 1.1 9.3 2.5 1.4 1 1 0 1 1 1 0 DHHC palmitoyltransferase DUF4133 PF13571.6 gi|257373036|ref|YP_003175810.1| - 9.6 6.6 14.8 1.2 9.5 3.1 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4133) DUF5326 PF17260.2 gi|257373037|ref|YP_003175811.1| - 0.027 14.6 4.6 0.027 14.6 4.6 1.7 2 0 0 2 2 2 0 Family of unknown function (DUF5326) Phage_holin_3_6 PF07332.11 gi|257373037|ref|YP_003175811.1| - 4.2 7.5 13.0 4.9 7.2 13.0 1.1 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III DUF4013 PF13197.6 gi|257373038|ref|YP_003175812.1| - 0.004 17.0 20.9 0.004 17.0 20.9 2.6 1 1 2 3 3 3 2 Protein of unknown function (DUF4013) DUF624 PF04854.14 gi|257373038|ref|YP_003175812.1| - 0.31 11.2 0.1 0.31 11.2 0.1 3.2 3 2 0 3 3 3 0 Protein of unknown function, DUF624 FAD_binding_7 PF03441.14 gi|257373039|ref|YP_003175813.1| - 1.5e-59 200.9 0.2 2.2e-59 200.3 0.2 1.2 1 0 0 1 1 1 1 FAD binding domain of DNA photolyase DNA_photolyase PF00875.18 gi|257373039|ref|YP_003175813.1| - 7.8e-21 74.8 0.1 4.3e-20 72.4 0.1 2.0 2 0 0 2 2 2 1 DNA photolyase RTP1_C2 PF10304.9 gi|257373039|ref|YP_003175813.1| - 0.046 13.4 0.1 3.6 7.4 0.1 2.6 2 0 0 2 2 2 0 Required for nuclear transport of RNA pol II C-terminus 2 ABM PF03992.16 gi|257373039|ref|YP_003175813.1| - 0.055 13.6 0.0 4.6 7.4 0.0 2.6 2 0 0 2 2 2 0 Antibiotic biosynthesis monooxygenase GNAT_like PF18407.1 gi|257373039|ref|YP_003175813.1| - 0.21 12.0 7.7 0.042 14.2 2.5 2.6 3 0 0 3 3 3 0 GCN5-related N-acetyltransferase like domain DUF5383 PF17355.2 gi|257373040|ref|YP_003175814.1| - 0.23 11.8 0.7 0.27 11.6 0.7 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5383) HTH_10 PF04967.12 gi|257373041|ref|YP_003175815.1| - 2.3e-13 49.7 0.1 3.6e-13 49.1 0.1 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.16 gi|257373041|ref|YP_003175815.1| - 0.00014 21.3 1.3 0.00033 20.1 1.3 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_20 PF12840.7 gi|257373041|ref|YP_003175815.1| - 0.0025 17.8 0.3 0.0085 16.1 0.3 2.0 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|257373041|ref|YP_003175815.1| - 0.0086 15.7 1.6 0.19 11.4 1.6 2.4 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_30 PF13556.6 gi|257373041|ref|YP_003175815.1| - 0.028 14.2 0.2 0.075 12.8 0.0 1.7 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain MarR_2 PF12802.7 gi|257373041|ref|YP_003175815.1| - 0.1 12.5 1.5 0.79 9.6 1.5 2.3 1 1 0 1 1 1 0 MarR family HTH_IclR PF09339.10 gi|257373041|ref|YP_003175815.1| - 0.15 11.9 0.6 0.47 10.3 0.1 2.1 2 0 0 2 2 2 0 IclR helix-turn-helix domain COX1 PF00115.20 gi|257373042|ref|YP_003175816.1| - 1.4e-87 294.4 51.2 1.4e-87 294.4 51.2 1.9 1 1 1 2 2 2 1 Cytochrome C and Quinol oxidase polypeptide I COX2 PF00116.20 gi|257373043|ref|YP_003175817.1| - 5.6e-09 35.9 0.0 8.4e-09 35.4 0.0 1.3 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, periplasmic domain Cupredoxin_1 PF13473.6 gi|257373043|ref|YP_003175817.1| - 0.032 14.3 0.0 0.044 13.9 0.0 1.3 1 0 0 1 1 1 0 Cupredoxin-like domain UCR_Fe-S_N PF10399.9 gi|257373043|ref|YP_003175817.1| - 2.5 7.5 4.4 5.3 6.5 4.4 1.5 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal E1-E2_ATPase PF00122.20 gi|257373045|ref|YP_003175819.1| - 4.7e-40 137.0 3.9 4.7e-40 137.0 3.9 1.8 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.26 gi|257373045|ref|YP_003175819.1| - 6e-32 111.6 4.2 6e-32 111.6 4.2 1.7 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|257373045|ref|YP_003175819.1| - 7.7e-09 35.9 0.0 1.1e-07 32.2 0.0 3.0 2 0 0 2 2 2 1 Heavy-metal-associated domain ATPase-cat_bd PF12156.8 gi|257373045|ref|YP_003175819.1| - 0.0017 19.1 0.3 0.0043 17.8 0.2 1.7 2 0 0 2 2 2 1 Putative metal-binding domain of cation transport ATPase Hydrolase_3 PF08282.12 gi|257373045|ref|YP_003175819.1| - 0.0032 17.2 0.2 0.0053 16.5 0.2 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|257373045|ref|YP_003175819.1| - 0.037 14.4 0.6 0.2 12.0 0.6 2.2 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase DsbD_2 PF13386.6 gi|257373046|ref|YP_003175820.1| - 2.8e-49 167.8 16.5 3.3e-49 167.5 16.5 1.0 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region MCPsignal PF00015.21 gi|257373048|ref|YP_003175822.1| - 1.7e-52 177.7 49.3 5.5e-47 159.8 24.8 3.6 1 1 2 3 3 3 3 Methyl-accepting chemotaxis protein (MCP) signalling domain Protoglobin PF11563.8 gi|257373048|ref|YP_003175822.1| - 5.1e-32 111.0 0.8 8e-31 107.1 0.8 2.8 1 1 0 1 1 1 1 Protoglobin DUF948 PF06103.11 gi|257373048|ref|YP_003175822.1| - 2.9e-06 27.5 32.4 0.0015 18.7 3.4 5.4 2 2 2 4 4 4 2 Bacterial protein of unknown function (DUF948) Laminin_II PF06009.12 gi|257373048|ref|YP_003175822.1| - 0.0014 18.6 29.4 0.86 9.6 1.8 4.5 2 2 0 3 3 3 2 Laminin Domain II Spc7 PF08317.11 gi|257373048|ref|YP_003175822.1| - 0.0051 15.7 7.1 0.0051 15.7 7.1 2.7 3 0 0 3 3 3 2 Spc7 kinetochore protein BLOC1_2 PF10046.9 gi|257373048|ref|YP_003175822.1| - 0.0065 16.7 25.6 0.1 12.9 1.3 5.3 3 2 3 6 6 5 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 IMD PF08397.11 gi|257373048|ref|YP_003175822.1| - 0.014 14.8 2.8 0.041 13.3 0.5 2.4 1 1 1 2 2 2 0 IRSp53/MIM homology domain Syntaxin-6_N PF09177.11 gi|257373048|ref|YP_003175822.1| - 0.015 15.8 2.0 0.015 15.8 2.0 5.2 3 3 2 5 5 5 0 Syntaxin 6, N-terminal DUF4047 PF13256.6 gi|257373048|ref|YP_003175822.1| - 0.027 14.6 1.8 0.027 14.6 1.8 2.8 2 1 1 3 3 3 0 Domain of unknown function (DUF4047) KxDL PF10241.9 gi|257373048|ref|YP_003175822.1| - 0.033 14.5 7.2 2.5 8.4 0.1 4.9 4 1 1 5 5 5 0 Uncharacterized conserved protein DUF1664 PF07889.12 gi|257373048|ref|YP_003175822.1| - 0.058 13.4 28.3 0.59 10.2 2.0 4.8 4 1 1 5 5 5 0 Protein of unknown function (DUF1664) DASH_Dad2 PF08654.10 gi|257373048|ref|YP_003175822.1| - 0.064 13.7 16.5 1.2 9.6 1.1 4.7 1 1 2 4 4 4 0 DASH complex subunit Dad2 DUF1043 PF06295.12 gi|257373048|ref|YP_003175822.1| - 0.065 13.2 0.1 2.5 8.1 0.0 2.8 2 1 0 2 2 2 0 Protein of unknown function (DUF1043) IFT57 PF10498.9 gi|257373048|ref|YP_003175822.1| - 0.15 11.0 15.7 0.46 9.4 7.0 2.5 1 1 1 2 2 2 0 Intra-flagellar transport protein 57 CREPT PF16566.5 gi|257373048|ref|YP_003175822.1| - 0.49 10.5 12.2 3.8 7.7 2.3 3.6 1 1 3 4 4 4 0 Cell-cycle alteration and expression-elevated protein in tumour TBCA PF02970.16 gi|257373048|ref|YP_003175822.1| - 0.5 10.7 19.9 0.11 12.9 1.1 4.0 4 0 0 4 4 3 0 Tubulin binding cofactor A DUF4200 PF13863.6 gi|257373048|ref|YP_003175822.1| - 0.55 10.6 13.4 2.3 8.6 2.8 3.8 2 2 0 2 2 2 0 Domain of unknown function (DUF4200) Tweety PF04906.13 gi|257373048|ref|YP_003175822.1| - 0.74 8.4 14.8 1.7 7.2 0.9 3.8 3 1 1 4 4 4 0 Tweety Cortex-I_coil PF09304.10 gi|257373048|ref|YP_003175822.1| - 0.76 10.0 16.4 7.5 6.8 0.3 4.3 1 1 4 5 5 5 0 Cortexillin I, coiled coil Serine_rich PF08824.10 gi|257373048|ref|YP_003175822.1| - 1.4 8.9 10.3 1.2 9.1 1.3 3.6 1 1 2 3 3 3 0 Serine rich protein interaction domain Octopine_DH PF02317.17 gi|257373048|ref|YP_003175822.1| - 1.4 9.0 5.5 0.34 11.0 0.5 2.5 3 1 0 3 3 2 0 NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain TPR_20 PF14561.6 gi|257373048|ref|YP_003175822.1| - 3.6 8.0 7.8 3.1 8.2 1.0 3.2 2 1 0 2 2 2 0 Tetratricopeptide repeat DUF3450 PF11932.8 gi|257373048|ref|YP_003175822.1| - 4.3 6.6 31.8 0.26 10.5 2.6 4.2 1 1 3 4 4 4 0 Protein of unknown function (DUF3450) Fib_alpha PF08702.10 gi|257373048|ref|YP_003175822.1| - 7 6.8 19.8 6.6 6.9 1.3 4.7 3 2 3 6 6 6 0 Fibrinogen alpha/beta chain family ELFV_dehydrog PF00208.21 gi|257373049|ref|YP_003175823.1| - 1.1e-69 234.8 0.0 1.4e-69 234.5 0.0 1.1 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 gi|257373049|ref|YP_003175823.1| - 4.9e-55 184.9 0.0 8.2e-55 184.2 0.0 1.4 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.19 gi|257373049|ref|YP_003175823.1| - 0.0005 19.5 0.0 0.00086 18.7 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Bac_GDH PF05088.12 gi|257373049|ref|YP_003175823.1| - 0.13 9.8 0.0 0.23 8.9 0.0 1.3 1 0 0 1 1 1 0 Bacterial NAD-glutamate dehydrogenase IlvN PF07991.12 gi|257373049|ref|YP_003175823.1| - 0.13 11.8 0.0 0.25 10.9 0.0 1.5 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain Zn-ribbon_8 PF09723.10 gi|257373050|ref|YP_003175824.1| - 0.00032 20.7 3.9 0.00067 19.7 3.9 1.6 1 1 0 1 1 1 1 Zinc ribbon domain DZR PF12773.7 gi|257373050|ref|YP_003175824.1| - 0.00059 19.8 0.9 0.00066 19.7 0.9 1.1 1 0 0 1 1 1 1 Double zinc ribbon zf-C2HC5 PF06221.13 gi|257373050|ref|YP_003175824.1| - 0.0019 18.1 0.2 0.0022 17.9 0.2 1.1 1 0 0 1 1 1 1 Putative zinc finger motif, C2HC5-type DUF1272 PF06906.11 gi|257373050|ref|YP_003175824.1| - 0.0039 17.2 1.3 0.0046 17.0 1.3 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1272) zinc_ribbon_2 PF13240.6 gi|257373050|ref|YP_003175824.1| - 0.0068 16.1 1.5 0.012 15.4 1.5 1.4 1 1 0 1 1 1 1 zinc-ribbon domain HypA PF01155.19 gi|257373050|ref|YP_003175824.1| - 0.0076 16.3 0.8 0.0081 16.2 0.8 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ribbon_3 PF13248.6 gi|257373050|ref|YP_003175824.1| - 0.015 14.6 2.7 0.039 13.4 2.7 1.6 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_9 PF14369.6 gi|257373050|ref|YP_003175824.1| - 0.017 15.4 3.0 0.032 14.5 2.4 1.7 1 1 1 2 2 2 0 zinc-ribbon OrfB_Zn_ribbon PF07282.11 gi|257373050|ref|YP_003175824.1| - 0.021 14.7 0.6 0.025 14.5 0.6 1.1 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Prim_Zn_Ribbon PF08273.12 gi|257373050|ref|YP_003175824.1| - 0.022 15.0 0.2 0.022 15.0 0.2 1.6 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase DNA_RNApol_7kD PF03604.13 gi|257373050|ref|YP_003175824.1| - 0.039 13.6 1.6 0.056 13.1 1.6 1.3 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Auto_anti-p27 PF06677.12 gi|257373050|ref|YP_003175824.1| - 0.15 12.3 2.3 0.2 11.8 2.3 1.3 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DUF2072 PF09845.9 gi|257373050|ref|YP_003175824.1| - 0.21 11.9 1.3 0.25 11.6 1.3 1.1 1 0 0 1 1 1 0 Zn-ribbon containing protein zf-Mss51 PF13824.6 gi|257373050|ref|YP_003175824.1| - 0.47 10.6 5.5 0.53 10.4 0.3 2.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf_UBZ PF18439.1 gi|257373050|ref|YP_003175824.1| - 0.49 10.0 2.9 12 5.5 0.1 2.2 1 1 1 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-H2C2_2 PF13465.6 gi|257373050|ref|YP_003175824.1| - 4.2 8.0 7.2 12 6.5 1.2 2.1 1 1 1 2 2 2 0 Zinc-finger double domain BAT PF15915.5 gi|257373051|ref|YP_003175825.1| - 3.5e-39 134.2 14.4 3.5e-39 134.2 14.4 4.1 4 1 0 4 4 4 1 GAF and HTH_10 associated domain GAF_2 PF13185.6 gi|257373051|ref|YP_003175825.1| - 2.2e-22 79.8 11.0 1.9e-16 60.6 0.6 3.1 3 0 0 3 3 3 2 GAF domain HTH_10 PF04967.12 gi|257373051|ref|YP_003175825.1| - 2.8e-18 65.5 0.0 2.7e-17 62.3 0.0 2.5 2 0 0 2 2 2 1 HTH DNA binding domain PAS_4 PF08448.10 gi|257373051|ref|YP_003175825.1| - 3.3e-15 56.3 7.9 9.8e-10 38.7 0.6 4.3 4 1 0 4 4 4 2 PAS fold GAF_3 PF13492.6 gi|257373051|ref|YP_003175825.1| - 1.1e-10 42.0 0.3 4.3e-05 23.9 0.0 2.7 2 0 0 2 2 2 2 GAF domain PAS_9 PF13426.7 gi|257373051|ref|YP_003175825.1| - 5.6e-10 39.4 0.2 0.00015 22.0 0.0 3.1 3 0 0 3 3 3 2 PAS domain Response_reg PF00072.24 gi|257373051|ref|YP_003175825.1| - 1e-08 35.3 0.0 2.6e-08 34.0 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain GAF PF01590.26 gi|257373051|ref|YP_003175825.1| - 7.5e-07 29.8 0.3 0.047 14.3 0.0 3.0 2 0 0 2 2 2 2 GAF domain PAS PF00989.25 gi|257373051|ref|YP_003175825.1| - 1.4e-06 28.2 0.2 0.0053 16.7 0.0 3.1 3 0 0 3 3 3 2 PAS fold PAS_7 PF12860.7 gi|257373051|ref|YP_003175825.1| - 1.8e-05 24.9 0.5 0.027 14.6 0.0 4.0 3 1 0 3 3 3 1 PAS fold PAS_8 PF13188.7 gi|257373051|ref|YP_003175825.1| - 0.00043 20.2 0.1 0.05 13.6 0.0 3.1 2 0 0 2 2 2 1 PAS domain HTH_24 PF13412.6 gi|257373051|ref|YP_003175825.1| - 0.018 14.6 0.1 2.6 7.7 0.0 2.9 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Sigma70_r4 PF04545.16 gi|257373051|ref|YP_003175825.1| - 0.027 14.0 0.1 1.4 8.5 0.0 3.0 2 0 0 2 2 2 0 Sigma-70, region 4 DUF4288 PF14119.6 gi|257373051|ref|YP_003175825.1| - 0.055 13.9 0.3 0.37 11.2 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4288) Peripla_BP_2 PF01497.18 gi|257373052|ref|YP_003175826.1| - 1.5e-21 77.0 0.0 1.9e-21 76.7 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein TAT_signal PF10518.9 gi|257373052|ref|YP_003175826.1| - 0.022 14.6 0.0 0.042 13.7 0.0 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF3558 PF12079.8 gi|257373052|ref|YP_003175826.1| - 0.22 11.5 6.2 0.36 10.8 6.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3558) DrsE_2 PF13686.6 gi|257373053|ref|YP_003175827.1| - 2.2e-53 180.3 0.2 2.7e-53 180.0 0.2 1.1 1 0 0 1 1 1 1 DsrE/DsrF/DrsH-like family DrsE PF02635.15 gi|257373053|ref|YP_003175827.1| - 1.5e-07 31.8 0.0 5.9e-07 29.9 0.0 1.8 1 1 0 1 1 1 1 DsrE/DsrF-like family Prenyltrans PF00432.21 gi|257373053|ref|YP_003175827.1| - 0.049 13.4 0.1 0.1 12.4 0.1 1.5 1 0 0 1 1 1 0 Prenyltransferase and squalene oxidase repeat TusA PF01206.17 gi|257373054|ref|YP_003175828.1| - 8.1e-20 70.4 0.0 9.3e-20 70.2 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.9 gi|257373054|ref|YP_003175828.1| - 0.16 11.8 0.0 0.43 10.5 0.0 1.6 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2249) Lactamase_B PF00753.27 gi|257373055|ref|YP_003175829.1| - 2.7e-14 53.6 5.5 4.6e-14 52.9 5.5 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Rhodanese PF00581.20 gi|257373055|ref|YP_003175829.1| - 2.7e-11 44.0 0.0 5e-11 43.1 0.0 1.5 1 0 0 1 1 1 1 Rhodanese-like domain Lactamase_B_2 PF12706.7 gi|257373055|ref|YP_003175829.1| - 0.0006 19.4 0.2 0.0012 18.4 0.2 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain DUF4454 PF14628.6 gi|257373055|ref|YP_003175829.1| - 0.036 13.9 0.2 0.081 12.7 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4454) Sulf_transp PF04143.14 gi|257373056|ref|YP_003175830.1| - 5.5e-08 32.7 21.9 4.4e-07 29.8 21.9 2.3 1 1 0 1 1 1 1 Sulphur transport DUF1404 PF07185.11 gi|257373056|ref|YP_003175830.1| - 0.87 9.3 5.8 0.057 13.1 0.6 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1404) DUF4282 PF14110.6 gi|257373056|ref|YP_003175830.1| - 2.6 8.8 6.6 0.69 10.7 1.7 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF4282) Trp_oprn_chp PF09534.10 gi|257373056|ref|YP_003175830.1| - 6.3 6.5 13.1 0.2 11.4 3.6 2.5 1 1 2 3 3 3 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) Sulf_transp PF04143.14 gi|257373057|ref|YP_003175831.1| - 3.1e-09 36.9 5.8 3.1e-09 36.9 5.8 2.0 1 1 1 2 2 2 1 Sulphur transport Pneumo_att_G PF05539.11 gi|257373057|ref|YP_003175831.1| - 0.9 9.1 10.0 1.2 8.6 10.0 1.1 1 0 0 1 1 1 0 Pneumovirinae attachment membrane glycoprotein G PHO4 PF01384.20 gi|257373058|ref|YP_003175832.1| - 1.8e-44 152.2 28.1 1.8e-44 152.2 28.1 1.4 1 1 0 1 1 1 1 Phosphate transporter family TrmB PF01978.19 gi|257373059|ref|YP_003175833.1| - 4e-18 65.1 0.0 5.3e-18 64.7 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|257373059|ref|YP_003175833.1| - 1.8e-06 27.7 0.1 4e-06 26.7 0.0 1.6 2 0 0 2 2 1 1 MarR family HTH_IclR PF09339.10 gi|257373059|ref|YP_003175833.1| - 1e-05 25.2 0.0 1.8e-05 24.4 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain Penicillinase_R PF03965.16 gi|257373059|ref|YP_003175833.1| - 1.3e-05 25.5 0.0 1.6e-05 25.2 0.0 1.1 1 0 0 1 1 1 1 Penicillinase repressor HTH_20 PF12840.7 gi|257373059|ref|YP_003175833.1| - 1.7e-05 24.8 0.1 3.2e-05 23.9 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|257373059|ref|YP_003175833.1| - 2.7e-05 24.0 0.1 4.1e-05 23.4 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|257373059|ref|YP_003175833.1| - 0.0002 20.9 0.0 0.00029 20.3 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|257373059|ref|YP_003175833.1| - 0.0003 20.7 0.0 0.00049 20.0 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_23 PF13384.6 gi|257373059|ref|YP_003175833.1| - 0.00055 19.6 0.0 0.00099 18.8 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain UMPH-1 PF05822.12 gi|257373059|ref|YP_003175833.1| - 0.0016 18.0 0.0 0.002 17.7 0.0 1.3 1 0 0 1 1 1 1 Pyrimidine 5'-nucleotidase (UMPH-1) HTH_38 PF13936.6 gi|257373059|ref|YP_003175833.1| - 0.0023 17.7 0.0 0.0037 17.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.6 gi|257373059|ref|YP_003175833.1| - 0.0085 16.6 0.0 0.012 16.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain GntR PF00392.21 gi|257373059|ref|YP_003175833.1| - 0.016 14.9 0.2 0.028 14.0 0.2 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family RuvB_C PF05491.13 gi|257373059|ref|YP_003175833.1| - 0.024 14.5 0.0 0.041 13.8 0.0 1.3 1 0 0 1 1 1 0 RuvB C-terminal winged helix domain PadR PF03551.14 gi|257373059|ref|YP_003175833.1| - 0.026 14.5 0.1 0.067 13.2 0.1 1.7 1 1 1 2 2 2 0 Transcriptional regulator PadR-like family HTH_29 PF13551.6 gi|257373059|ref|YP_003175833.1| - 0.026 14.6 0.0 0.039 14.0 0.0 1.4 1 1 0 1 1 1 0 Winged helix-turn helix HTH_Crp_2 PF13545.6 gi|257373059|ref|YP_003175833.1| - 0.043 13.8 0.1 0.1 12.6 0.1 1.6 1 1 1 2 2 2 0 Crp-like helix-turn-helix domain HTH_28 PF13518.6 gi|257373059|ref|YP_003175833.1| - 0.046 13.8 0.0 0.082 13.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain 2OG-Fe_Oxy_2 PF10014.9 gi|257373059|ref|YP_003175833.1| - 0.062 13.1 0.1 0.078 12.8 0.1 1.2 1 0 0 1 1 1 0 2OG-Fe dioxygenase DUF4423 PF14394.6 gi|257373059|ref|YP_003175833.1| - 0.064 13.0 0.0 0.12 12.0 0.0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4423) Rrf2 PF02082.20 gi|257373059|ref|YP_003175833.1| - 0.066 13.6 0.0 0.11 12.9 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator HTH_CodY PF08222.11 gi|257373059|ref|YP_003175833.1| - 0.19 11.3 0.0 0.35 10.5 0.0 1.4 1 0 0 1 1 1 0 CodY helix-turn-helix domain Thioredoxin PF00085.20 gi|257373060|ref|YP_003175834.1| - 1.1e-26 92.8 0.0 1.2e-26 92.6 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|257373060|ref|YP_003175834.1| - 1.3e-10 41.7 0.3 3.2e-09 37.2 0.2 2.2 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_3 PF13192.6 gi|257373060|ref|YP_003175834.1| - 1.6e-06 28.0 0.3 3.7e-06 26.9 0.2 1.6 1 1 1 2 2 2 1 Thioredoxin domain DSBA PF01323.20 gi|257373060|ref|YP_003175834.1| - 1.9e-06 27.8 0.2 1.9e-06 27.8 0.2 1.6 2 1 0 2 2 2 1 DSBA-like thioredoxin domain TraF PF13728.6 gi|257373060|ref|YP_003175834.1| - 2.7e-06 27.4 0.0 3.6e-06 27.0 0.0 1.1 1 0 0 1 1 1 1 F plasmid transfer operon protein Thioredoxin_7 PF13899.6 gi|257373060|ref|YP_003175834.1| - 2.1e-05 24.6 0.0 3.1e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_9 PF14595.6 gi|257373060|ref|YP_003175834.1| - 6.1e-05 22.8 0.0 7.7e-05 22.5 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin HyaE PF07449.11 gi|257373060|ref|YP_003175834.1| - 6.9e-05 22.8 0.1 0.00015 21.6 0.0 1.6 1 1 1 2 2 2 1 Hydrogenase-1 expression protein HyaE Thioredoxin_8 PF13905.6 gi|257373060|ref|YP_003175834.1| - 0.00015 22.0 0.0 0.42 11.0 0.0 2.2 1 1 1 2 2 2 2 Thioredoxin-like OST3_OST6 PF04756.13 gi|257373060|ref|YP_003175834.1| - 0.0016 17.8 0.0 0.0019 17.6 0.0 1.1 1 0 0 1 1 1 1 OST3 / OST6 family, transporter family DUF836 PF05768.14 gi|257373060|ref|YP_003175834.1| - 0.0016 18.8 0.0 0.0022 18.4 0.0 1.3 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Thioredoxin_5 PF13743.6 gi|257373060|ref|YP_003175834.1| - 0.0022 17.7 0.0 0.003 17.3 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin Glutaredoxin PF00462.24 gi|257373060|ref|YP_003175834.1| - 0.01 16.1 0.0 0.019 15.2 0.0 1.5 1 0 0 1 1 1 1 Glutaredoxin AhpC-TSA PF00578.21 gi|257373060|ref|YP_003175834.1| - 0.053 13.4 0.1 5 7.1 0.1 2.1 1 1 1 2 2 2 0 AhpC/TSA family Thioredoxin_4 PF13462.6 gi|257373060|ref|YP_003175834.1| - 0.14 12.3 0.0 0.16 12.1 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin P5CR_dimer PF14748.6 gi|257373061|ref|YP_003175835.1| - 4.7e-35 120.0 0.3 9.7e-35 118.9 0.3 1.6 1 0 0 1 1 1 1 Pyrroline-5-carboxylate reductase dimerisation F420_oxidored PF03807.17 gi|257373061|ref|YP_003175835.1| - 2.2e-16 60.2 1.0 5.9e-16 58.8 0.3 2.1 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|257373061|ref|YP_003175835.1| - 2.2e-06 27.9 0.1 7.3e-06 26.2 0.1 1.9 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|257373061|ref|YP_003175835.1| - 7.5e-05 23.0 0.1 0.00019 21.7 0.1 1.7 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain TrkA_N PF02254.18 gi|257373061|ref|YP_003175835.1| - 0.00027 21.2 0.3 0.0011 19.3 0.1 2.2 1 1 0 1 1 1 1 TrkA-N domain 3HCDH_N PF02737.18 gi|257373061|ref|YP_003175835.1| - 0.00033 20.6 0.3 0.00077 19.4 0.1 1.8 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PDH PF02153.17 gi|257373061|ref|YP_003175835.1| - 0.00037 19.6 0.1 0.0042 16.1 0.2 2.0 2 0 0 2 2 2 1 Prephenate dehydrogenase Methyltransf_25 PF13649.6 gi|257373061|ref|YP_003175835.1| - 0.0032 18.1 0.2 0.011 16.5 0.1 2.0 2 1 0 2 2 2 1 Methyltransferase domain UDPG_MGDP_dh_N PF03721.14 gi|257373061|ref|YP_003175835.1| - 0.011 15.3 0.3 0.024 14.2 0.3 1.6 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Shikimate_DH PF01488.20 gi|257373061|ref|YP_003175835.1| - 0.012 15.7 0.1 0.024 14.7 0.1 1.6 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase ApbA PF02558.16 gi|257373061|ref|YP_003175835.1| - 0.018 14.7 1.0 0.12 12.1 1.0 2.0 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.23 gi|257373061|ref|YP_003175835.1| - 0.018 15.0 1.4 2.3 8.2 0.1 2.5 1 1 1 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2-Hacid_dh_C PF02826.19 gi|257373061|ref|YP_003175835.1| - 0.05 13.0 0.1 0.081 12.3 0.1 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|257373061|ref|YP_003175835.1| - 0.069 13.6 1.3 0.092 13.2 0.3 1.8 2 1 0 2 2 2 0 Putative NAD(P)-binding IlvN PF07991.12 gi|257373061|ref|YP_003175835.1| - 0.076 12.6 0.1 0.11 12.1 0.1 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain ThiF PF00899.21 gi|257373061|ref|YP_003175835.1| - 0.11 11.8 0.2 0.22 10.8 0.2 1.4 1 0 0 1 1 1 0 ThiF family NAD_binding_10 PF13460.6 gi|257373061|ref|YP_003175835.1| - 1.2 9.0 7.6 0.48 10.3 2.8 2.6 2 1 0 2 2 2 0 NAD(P)H-binding YbaB_DNA_bd PF02575.16 gi|257373061|ref|YP_003175835.1| - 7.8 6.8 7.6 2.1 8.6 0.1 3.3 4 1 1 5 5 5 0 YbaB/EbfC DNA-binding family AA_kinase PF00696.28 gi|257373062|ref|YP_003175836.1| - 3.9e-38 131.4 2.3 5.4e-38 131.0 2.3 1.2 1 0 0 1 1 1 1 Amino acid kinase family Aldedh PF00171.22 gi|257373063|ref|YP_003175837.1| - 2.1e-24 85.9 7.1 9e-21 73.9 3.3 2.4 2 1 0 2 2 2 2 Aldehyde dehydrogenase family AFOR_C PF01314.18 gi|257373063|ref|YP_003175837.1| - 0.1 11.6 0.1 0.2 10.6 0.1 1.4 1 0 0 1 1 1 0 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 LTXXQ PF07813.12 gi|257373063|ref|YP_003175837.1| - 0.15 12.8 2.8 0.27 12.0 1.9 1.9 1 1 0 2 2 2 0 LTXXQ motif family protein SBP_bac_1 PF01547.25 gi|257373064|ref|YP_003175838.1| - 6.9e-13 49.2 2.5 1.7e-12 47.9 2.3 1.8 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|257373064|ref|YP_003175838.1| - 1.2e-12 47.8 0.0 2e-12 47.1 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|257373064|ref|YP_003175838.1| - 1.5e-11 44.5 0.0 3.7e-11 43.2 0.0 1.7 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein UCR_Fe-S_N PF10399.9 gi|257373064|ref|YP_003175838.1| - 0.023 14.0 1.6 0.049 13.0 1.6 1.6 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal TAT_signal PF10518.9 gi|257373064|ref|YP_003175838.1| - 0.024 14.5 2.1 0.054 13.4 2.1 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_1 PF00528.22 gi|257373065|ref|YP_003175839.1| - 2.4e-13 50.2 18.1 2.4e-13 50.2 18.1 1.7 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|257373066|ref|YP_003175840.1| - 2.4e-11 43.7 10.3 2.4e-11 43.7 10.3 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|257373067|ref|YP_003175841.1| - 4.1e-33 114.8 0.0 6.6e-33 114.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 gi|257373067|ref|YP_003175841.1| - 4.1e-10 39.7 1.0 1.2e-09 38.2 1.0 1.9 1 0 0 1 1 1 1 TOBE domain AAA_21 PF13304.6 gi|257373067|ref|YP_003175841.1| - 2.1e-06 27.8 0.1 0.031 14.1 0.0 2.5 2 1 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system CysA_C_terminal PF17850.1 gi|257373067|ref|YP_003175841.1| - 6e-05 23.5 0.5 0.00056 20.4 0.2 2.7 2 0 0 2 2 2 1 CysA C-terminal regulatory domain Rad17 PF03215.15 gi|257373067|ref|YP_003175841.1| - 0.0039 17.1 0.0 0.006 16.5 0.0 1.2 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_16 PF13191.6 gi|257373067|ref|YP_003175841.1| - 0.0044 17.4 0.6 0.011 16.2 0.6 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|257373067|ref|YP_003175841.1| - 0.011 16.0 0.7 0.026 14.8 0.6 1.8 1 1 0 1 1 1 0 AAA domain SMC_N PF02463.19 gi|257373067|ref|YP_003175841.1| - 0.022 14.2 0.3 0.34 10.3 0.3 2.1 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA PF00004.29 gi|257373067|ref|YP_003175841.1| - 0.022 15.2 0.9 0.14 12.6 0.9 2.4 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) PRK PF00485.18 gi|257373067|ref|YP_003175841.1| - 0.039 13.7 0.0 0.079 12.7 0.0 1.6 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family AAA_30 PF13604.6 gi|257373067|ref|YP_003175841.1| - 0.089 12.5 0.1 0.18 11.5 0.1 1.4 1 0 0 1 1 1 0 AAA domain FA_hydroxylase PF04116.13 gi|257373068|ref|YP_003175842.1| - 0.14 12.5 0.0 0.14 12.5 0.0 2.3 3 0 0 3 3 3 0 Fatty acid hydroxylase superfamily DUF4538 PF15061.6 gi|257373068|ref|YP_003175842.1| - 8 6.3 6.4 2.4 7.9 0.6 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4538) Usp PF00582.26 gi|257373069|ref|YP_003175843.1| - 1.7e-61 206.9 12.4 1.6e-30 106.5 5.1 2.0 2 0 0 2 2 2 2 Universal stress protein family GARS_N PF02844.15 gi|257373069|ref|YP_003175843.1| - 0.0052 17.6 0.1 0.71 10.7 0.0 2.4 2 0 0 2 2 2 2 Phosphoribosylglycinamide synthetase, N domain Lactamase_B_4 PF13691.6 gi|257373069|ref|YP_003175843.1| - 0.032 13.9 0.0 7.6 6.3 0.0 2.3 2 0 0 2 2 2 0 tRNase Z endonuclease Pyridox_ox_2 PF12900.7 gi|257373070|ref|YP_003175844.1| - 4.5e-21 75.3 0.0 5.1e-21 75.1 0.0 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Putative_PNPOx PF01243.20 gi|257373070|ref|YP_003175844.1| - 0.051 13.8 0.0 0.065 13.4 0.0 1.2 1 0 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase Usp PF00582.26 gi|257373071|ref|YP_003175845.1| - 4.9e-57 192.4 4.9 6.5e-29 101.3 1.7 2.1 2 0 0 2 2 2 2 Universal stress protein family YdjM PF04307.14 gi|257373072|ref|YP_003175846.1| - 0.0003 20.1 19.5 0.0057 16.0 19.4 2.5 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase PRA1 PF03208.19 gi|257373072|ref|YP_003175846.1| - 2.7 7.6 6.2 7.7 6.1 1.4 2.2 2 0 0 2 2 2 0 PRA1 family protein Usp PF00582.26 gi|257373073|ref|YP_003175847.1| - 1.1e-32 113.5 2.2 1.2e-32 113.3 2.2 1.0 1 0 0 1 1 1 1 Universal stress protein family IclR PF01614.18 gi|257373075|ref|YP_003175849.1| - 8.9e-37 125.8 0.0 2e-36 124.6 0.0 1.6 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|257373075|ref|YP_003175849.1| - 7.6e-12 44.9 0.3 3.5e-10 39.5 0.0 2.9 3 0 0 3 3 3 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|257373075|ref|YP_003175849.1| - 2.1e-05 24.3 0.0 7.3e-05 22.6 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_5 PF01022.20 gi|257373075|ref|YP_003175849.1| - 2.2e-05 24.2 0.1 6.5e-05 22.7 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|257373075|ref|YP_003175849.1| - 2.7e-05 24.0 0.0 5.9e-05 22.9 0.0 1.6 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.6 gi|257373075|ref|YP_003175849.1| - 0.00022 20.7 0.0 0.00059 19.3 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|257373075|ref|YP_003175849.1| - 0.00026 20.8 0.0 0.00056 19.8 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|257373075|ref|YP_003175849.1| - 0.00031 21.2 0.0 0.001 19.5 0.0 1.8 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_45 PF14947.6 gi|257373075|ref|YP_003175849.1| - 0.0024 17.8 0.0 0.0053 16.7 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_DeoR PF08220.12 gi|257373075|ref|YP_003175849.1| - 0.023 14.4 0.1 0.097 12.4 0.0 2.1 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain HTH_20 PF12840.7 gi|257373075|ref|YP_003175849.1| - 0.027 14.5 0.0 0.083 13.0 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain ALIX_LYPXL_bnd PF13949.6 gi|257373075|ref|YP_003175849.1| - 0.032 13.5 0.1 5.5 6.2 0.1 2.1 2 0 0 2 2 2 0 ALIX V-shaped domain binding to HIV HTH_34 PF13601.6 gi|257373075|ref|YP_003175849.1| - 0.065 13.4 0.0 0.12 12.6 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain FeoC PF09012.10 gi|257373075|ref|YP_003175849.1| - 0.081 13.0 0.0 0.15 12.1 0.0 1.5 1 0 0 1 1 1 0 FeoC like transcriptional regulator TrmB PF01978.19 gi|257373075|ref|YP_003175849.1| - 0.15 12.0 0.0 0.86 9.5 0.0 2.1 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB Aldo_ket_red PF00248.21 gi|257373076|ref|YP_003175850.1| - 2.3e-62 210.9 0.0 4.8e-60 203.2 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family PP-binding PF00550.25 gi|257373076|ref|YP_003175850.1| - 0.03 14.7 0.5 0.083 13.3 0.1 2.0 2 0 0 2 2 2 0 Phosphopantetheine attachment site DUF5021 PF16424.5 gi|257373076|ref|YP_003175850.1| - 0.13 12.0 0.0 0.21 11.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5021) Ish1 PF10281.9 gi|257373076|ref|YP_003175850.1| - 0.2 12.0 0.7 13 6.2 0.0 2.7 3 0 0 3 3 3 0 Putative stress-responsive nuclear envelope protein GFO_IDH_MocA PF01408.22 gi|257373077|ref|YP_003175851.1| - 1.1e-18 68.2 0.2 2.7e-18 66.9 0.2 1.7 1 1 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold AP_endonuc_2 PF01261.24 gi|257373077|ref|YP_003175851.1| - 0.063 12.7 0.0 0.097 12.1 0.0 1.3 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel DUF2264 PF10022.9 gi|257373078|ref|YP_003175852.1| - 1.2e-124 416.0 0.8 1.6e-124 415.6 0.8 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2264) Lar_N PF09861.9 gi|257373079|ref|YP_003175853.1| - 0.00099 18.3 0.0 0.0015 17.7 0.0 1.3 1 0 0 1 1 1 1 Lactate racemase N-terminal domain FAA_hydrolase PF01557.18 gi|257373080|ref|YP_003175854.1| - 2.8e-64 216.8 0.0 3.3e-64 216.5 0.0 1.1 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family DUF2437 PF10370.9 gi|257373080|ref|YP_003175854.1| - 3.7e-05 24.5 0.1 0.00034 21.4 0.0 2.6 3 0 0 3 3 3 1 Domain of unknown function (DUF2437) DUF4147 PF13660.6 gi|257373081|ref|YP_003175855.1| - 3.6e-75 252.4 2.8 6.4e-75 251.6 2.8 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4147) MOFRL PF05161.13 gi|257373081|ref|YP_003175855.1| - 7.7e-28 96.9 7.3 2.9e-27 95.0 7.3 2.1 1 0 0 1 1 1 1 MOFRL family PHP_C PF13263.6 gi|257373082|ref|YP_003175856.1| - 5.2e-07 29.3 1.2 1.3e-05 24.9 0.1 2.9 3 0 0 3 3 3 1 PHP-associated PHP PF02811.19 gi|257373082|ref|YP_003175856.1| - 0.077 13.3 0.1 0.11 12.8 0.1 1.2 1 0 0 1 1 1 0 PHP domain MFS_1 PF07690.16 gi|257373083|ref|YP_003175857.1| - 9.2e-40 136.6 59.3 1e-27 97.0 25.2 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|257373083|ref|YP_003175857.1| - 0.0019 17.1 3.1 0.0019 17.1 3.1 3.7 2 1 1 3 3 3 2 Sugar (and other) transporter Glyco_hydro_88 PF07470.13 gi|257373084|ref|YP_003175858.1| - 1.8e-29 102.9 0.9 2.3e-29 102.5 0.9 1.1 1 0 0 1 1 1 1 Glycosyl Hydrolase Family 88 AAA PF00004.29 gi|257386086|ref|YP_003175859.1| - 2.7e-80 267.3 0.0 9.1e-39 132.9 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|257386086|ref|YP_003175859.1| - 6.3e-12 45.1 6.8 2e-06 27.5 0.7 2.8 2 0 0 2 2 2 2 AAA+ lid domain AAA_18 PF13238.6 gi|257386086|ref|YP_003175859.1| - 4.5e-10 40.2 0.0 0.0023 18.5 0.0 3.0 3 0 0 3 3 2 2 AAA domain AAA_14 PF13173.6 gi|257386086|ref|YP_003175859.1| - 8.6e-10 38.8 0.0 0.0013 18.8 0.0 2.3 2 0 0 2 2 2 2 AAA domain RuvB_N PF05496.12 gi|257386086|ref|YP_003175859.1| - 4.5e-09 36.2 0.0 0.002 17.9 0.0 2.4 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain AAA_2 PF07724.14 gi|257386086|ref|YP_003175859.1| - 5.2e-09 36.5 0.0 0.0038 17.4 0.0 2.6 2 1 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_33 PF13671.6 gi|257386086|ref|YP_003175859.1| - 7.2e-09 35.9 0.0 0.0014 18.8 0.0 3.2 2 0 0 2 2 2 2 AAA domain AAA_5 PF07728.14 gi|257386086|ref|YP_003175859.1| - 8.8e-09 35.5 0.1 0.012 15.6 0.1 3.6 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|257386086|ref|YP_003175859.1| - 7.1e-08 33.0 14.9 0.029 14.7 3.0 5.2 3 2 1 4 4 3 2 AAA ATPase domain RNA_helicase PF00910.22 gi|257386086|ref|YP_003175859.1| - 9.8e-08 32.3 0.0 0.025 15.0 0.0 2.6 2 0 0 2 2 2 2 RNA helicase AAA_25 PF13481.6 gi|257386086|ref|YP_003175859.1| - 1.4e-07 31.3 7.8 1.3 8.6 0.0 5.6 4 1 1 5 5 5 2 AAA domain IstB_IS21 PF01695.17 gi|257386086|ref|YP_003175859.1| - 3.4e-07 30.2 0.0 0.031 14.0 0.0 2.5 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_22 PF13401.6 gi|257386086|ref|YP_003175859.1| - 1.5e-06 28.5 0.4 0.063 13.6 0.0 3.4 2 2 0 2 2 2 2 AAA domain NACHT PF05729.12 gi|257386086|ref|YP_003175859.1| - 1.7e-06 28.0 1.3 3.9 7.3 0.0 4.5 2 2 2 4 4 4 1 NACHT domain Viral_helicase1 PF01443.18 gi|257386086|ref|YP_003175859.1| - 3.5e-05 23.6 0.0 0.037 13.7 0.0 2.4 2 0 0 2 2 2 2 Viral (Superfamily 1) RNA helicase Zeta_toxin PF06414.12 gi|257386086|ref|YP_003175859.1| - 4.9e-05 22.7 0.0 0.19 11.0 0.0 2.5 2 0 0 2 2 2 2 Zeta toxin AAA_28 PF13521.6 gi|257386086|ref|YP_003175859.1| - 6.8e-05 23.2 3.4 0.28 11.4 0.0 4.0 4 1 0 4 4 3 2 AAA domain Rad17 PF03215.15 gi|257386086|ref|YP_003175859.1| - 8.1e-05 22.6 0.0 0.34 10.8 0.0 2.4 2 0 0 2 2 2 2 Rad17 P-loop domain Cytidylate_kin2 PF13189.6 gi|257386086|ref|YP_003175859.1| - 0.00014 22.0 0.0 0.82 9.8 0.0 2.6 2 0 0 2 2 2 2 Cytidylate kinase-like family ABC_tran PF00005.27 gi|257386086|ref|YP_003175859.1| - 0.00015 22.2 0.0 0.42 11.1 0.0 2.9 2 1 0 2 2 2 2 ABC transporter Mg_chelatase PF01078.21 gi|257386086|ref|YP_003175859.1| - 0.00017 21.1 0.3 0.45 9.9 0.0 2.8 3 0 0 3 3 3 2 Magnesium chelatase, subunit ChlI TIP49 PF06068.13 gi|257386086|ref|YP_003175859.1| - 0.00022 20.5 0.1 0.66 9.1 0.0 3.0 3 0 0 3 3 3 2 TIP49 P-loop domain TsaE PF02367.17 gi|257386086|ref|YP_003175859.1| - 0.00024 21.1 0.0 0.81 9.7 0.0 2.4 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_7 PF12775.7 gi|257386086|ref|YP_003175859.1| - 0.00043 19.8 0.0 0.86 9.1 0.0 2.7 2 1 0 2 2 2 2 P-loop containing dynein motor region AAA_19 PF13245.6 gi|257386086|ref|YP_003175859.1| - 0.0015 18.9 0.0 3.7 7.9 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_3 PF07726.11 gi|257386086|ref|YP_003175859.1| - 0.0017 18.2 0.0 0.82 9.5 0.0 2.5 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Mu-like_Pro PF10123.9 gi|257386086|ref|YP_003175859.1| - 0.0028 17.3 0.2 0.58 9.7 0.1 2.3 2 0 0 2 2 2 1 Mu-like prophage I protein SMC_N PF02463.19 gi|257386086|ref|YP_003175859.1| - 0.0028 17.1 0.1 20 4.5 0.0 4.0 4 0 0 4 4 4 0 RecF/RecN/SMC N terminal domain PhoH PF02562.16 gi|257386086|ref|YP_003175859.1| - 0.0029 17.1 0.0 2.3 7.6 0.0 2.3 2 0 0 2 2 2 2 PhoH-like protein Parvo_NS1 PF01057.17 gi|257386086|ref|YP_003175859.1| - 0.0045 16.1 0.0 0.56 9.3 0.0 2.2 2 0 0 2 2 2 1 Parvovirus non-structural protein NS1 AAA_30 PF13604.6 gi|257386086|ref|YP_003175859.1| - 0.0045 16.7 0.8 7.2 6.3 0.0 3.7 3 1 0 3 3 3 0 AAA domain AAA_24 PF13479.6 gi|257386086|ref|YP_003175859.1| - 0.0061 16.3 0.5 2.1 8.0 0.0 3.5 4 0 0 4 4 3 1 AAA domain AAA_17 PF13207.6 gi|257386086|ref|YP_003175859.1| - 0.017 15.6 0.1 5 7.5 0.0 2.8 2 0 0 2 2 2 0 AAA domain AAA_11 PF13086.6 gi|257386086|ref|YP_003175859.1| - 0.03 14.1 2.8 2 8.1 0.0 2.8 4 0 0 4 4 2 0 AAA domain Sigma54_activ_2 PF14532.6 gi|257386086|ref|YP_003175859.1| - 0.037 14.2 0.6 14 5.8 0.0 3.4 2 2 0 2 2 2 0 Sigma-54 interaction domain DUF815 PF05673.13 gi|257386086|ref|YP_003175859.1| - 0.09 11.9 0.0 11 5.1 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF815) Sigma54_activat PF00158.26 gi|257386086|ref|YP_003175859.1| - 0.15 11.8 0.0 22 4.7 0.0 2.8 3 1 0 3 3 2 0 Sigma-54 interaction domain ATPase PF06745.13 gi|257386086|ref|YP_003175859.1| - 0.17 11.2 0.1 11 5.3 0.0 2.6 2 1 0 2 2 2 0 KaiC TniB PF05621.11 gi|257386086|ref|YP_003175859.1| - 0.2 11.1 0.0 31 3.9 0.0 3.3 4 0 0 4 4 4 0 Bacterial TniB protein PduV-EutP PF10662.9 gi|257386086|ref|YP_003175859.1| - 0.25 11.1 0.0 13 5.5 0.0 2.3 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation Thi4 PF01946.17 gi|257386087|ref|YP_003175860.1| - 7.5e-62 208.6 0.2 5e-50 169.9 0.2 2.2 2 0 0 2 2 2 2 Thi4 family FAD_oxidored PF12831.7 gi|257386087|ref|YP_003175860.1| - 1.4e-11 44.4 0.5 2.5e-11 43.6 0.5 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase DAO PF01266.24 gi|257386087|ref|YP_003175860.1| - 5.7e-11 42.6 1.5 1.2e-06 28.3 0.6 2.2 1 1 0 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|257386087|ref|YP_003175860.1| - 5.8e-11 42.1 1.0 2.8e-08 33.3 0.5 2.2 1 1 0 2 2 2 2 FAD binding domain FAD_binding_3 PF01494.19 gi|257386087|ref|YP_003175860.1| - 7.2e-10 38.6 0.1 1.3e-09 37.8 0.1 1.4 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.6 gi|257386087|ref|YP_003175860.1| - 3.4e-09 36.8 0.1 7.4e-09 35.7 0.1 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_2 PF07992.14 gi|257386087|ref|YP_003175860.1| - 9.2e-09 34.9 0.1 1.7e-08 34.1 0.1 1.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|257386087|ref|YP_003175860.1| - 8e-08 31.4 0.0 1.1e-07 31.0 0.0 1.2 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox_3 PF13738.6 gi|257386087|ref|YP_003175860.1| - 7.4e-06 25.4 0.1 1.4e-05 24.6 0.1 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 gi|257386087|ref|YP_003175860.1| - 2.5e-05 23.3 0.2 0.0054 15.6 0.1 2.1 2 0 0 2 2 2 2 Tryptophan halogenase Lycopene_cycl PF05834.12 gi|257386087|ref|YP_003175860.1| - 2.9e-05 23.3 0.2 0.0011 18.1 0.1 2.1 2 0 0 2 2 2 1 Lycopene cyclase protein Pyr_redox PF00070.27 gi|257386087|ref|YP_003175860.1| - 3e-05 24.5 0.3 9.4e-05 22.9 0.3 1.8 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|257386087|ref|YP_003175860.1| - 0.0001 22.3 0.6 0.00027 21.0 0.2 1.9 2 0 0 2 2 2 1 FAD-NAD(P)-binding Amino_oxidase PF01593.24 gi|257386087|ref|YP_003175860.1| - 0.00017 21.0 0.5 0.00061 19.2 0.0 2.1 3 0 0 3 3 3 1 Flavin containing amine oxidoreductase NAD_binding_7 PF13241.6 gi|257386087|ref|YP_003175860.1| - 0.00043 20.7 0.1 0.00088 19.7 0.1 1.6 1 1 0 1 1 1 1 Putative NAD(P)-binding GIDA PF01134.22 gi|257386087|ref|YP_003175860.1| - 0.00047 19.3 0.3 0.00076 18.7 0.3 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A Shikimate_DH PF01488.20 gi|257386087|ref|YP_003175860.1| - 0.0013 18.8 0.0 0.07 13.2 0.0 2.2 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase Glu_dehyd_C PF16912.5 gi|257386087|ref|YP_003175860.1| - 0.0031 17.0 0.9 1.1 8.7 0.0 2.9 4 0 0 4 4 4 1 Glucose dehydrogenase C-terminus TrkA_N PF02254.18 gi|257386087|ref|YP_003175860.1| - 0.011 16.0 1.0 0.015 15.5 0.1 1.7 2 0 0 2 2 1 0 TrkA-N domain YjeF_N PF03853.15 gi|257386087|ref|YP_003175860.1| - 0.012 15.6 0.1 0.55 10.1 0.0 2.3 2 0 0 2 2 2 0 YjeF-related protein N-terminus Ribosomal_S2 PF00318.20 gi|257386087|ref|YP_003175860.1| - 0.044 13.0 0.0 0.058 12.6 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein S2 AlaDh_PNT_C PF01262.21 gi|257386087|ref|YP_003175860.1| - 0.05 12.9 0.2 0.11 11.7 0.1 1.6 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain DUF1188 PF06690.11 gi|257386087|ref|YP_003175860.1| - 0.13 11.8 0.0 6.2 6.3 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF1188) DNase-RNase PF02577.14 gi|257386088|ref|YP_003175861.1| - 4.7e-38 129.8 0.0 6e-38 129.4 0.0 1.1 1 0 0 1 1 1 1 Bifunctional nuclease TRAP_alpha PF03896.16 gi|257386090|ref|YP_003175863.1| - 3.4 6.8 5.7 0.39 9.9 0.1 1.8 2 0 0 2 2 2 0 Translocon-associated protein (TRAP), alpha subunit DUF3194 PF11419.8 gi|257386092|ref|YP_003175865.1| - 0.00086 19.6 0.8 0.0011 19.2 0.8 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3194) Prefoldin_2 PF01920.20 gi|257386093|ref|YP_003175866.1| - 8.7e-27 93.2 20.5 9.7e-27 93.0 20.5 1.0 1 0 0 1 1 1 1 Prefoldin subunit FlaC_arch PF05377.11 gi|257386093|ref|YP_003175866.1| - 0.0023 18.3 4.5 0.0023 18.3 4.5 2.4 2 1 0 2 2 2 1 Flagella accessory protein C (FlaC) DUF3584 PF12128.8 gi|257386093|ref|YP_003175866.1| - 0.0085 13.7 9.7 0.011 13.4 9.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) XhlA PF10779.9 gi|257386093|ref|YP_003175866.1| - 0.0085 16.3 2.2 0.0085 16.3 2.2 2.2 2 0 0 2 2 2 1 Haemolysin XhlA DUF5082 PF16888.5 gi|257386093|ref|YP_003175866.1| - 0.014 15.7 11.3 0.019 15.3 11.3 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF5082) Laminin_II PF06009.12 gi|257386093|ref|YP_003175866.1| - 0.019 15.0 10.0 0.026 14.5 10.0 1.2 1 0 0 1 1 1 0 Laminin Domain II eIF3_N PF09440.10 gi|257386093|ref|YP_003175866.1| - 0.036 14.5 4.1 0.036 14.5 4.1 2.0 1 1 1 2 2 2 0 eIF3 subunit 6 N terminal domain CLZ PF16526.5 gi|257386093|ref|YP_003175866.1| - 0.044 14.2 3.8 0.044 14.2 3.8 2.4 2 1 0 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels DUF1804 PF08822.11 gi|257386093|ref|YP_003175866.1| - 0.047 13.7 3.4 0.27 11.2 2.8 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF1804) Laminin_I PF06008.14 gi|257386093|ref|YP_003175866.1| - 0.058 13.1 17.0 0.55 9.9 2.6 2.1 1 1 1 2 2 2 0 Laminin Domain I EzrA PF06160.12 gi|257386093|ref|YP_003175866.1| - 0.065 11.4 17.0 0.099 10.8 17.0 1.2 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA Sec8_exocyst PF04048.14 gi|257386093|ref|YP_003175866.1| - 0.11 12.3 6.2 0.047 13.6 3.5 1.7 1 1 1 2 2 2 0 Sec8 exocyst complex component specific domain NBD94 PF16830.5 gi|257386093|ref|YP_003175866.1| - 0.12 12.8 6.1 0.18 12.2 6.1 1.4 1 0 0 1 1 1 0 Nucleotide-Binding Domain 94 of RH Prefoldin PF02996.17 gi|257386093|ref|YP_003175866.1| - 0.17 11.8 18.8 1.1 9.2 18.8 2.2 1 1 0 1 1 1 0 Prefoldin subunit Troponin PF00992.20 gi|257386093|ref|YP_003175866.1| - 0.18 12.1 10.9 0.22 11.8 10.9 1.1 1 0 0 1 1 1 0 Troponin BLOC1_2 PF10046.9 gi|257386093|ref|YP_003175866.1| - 0.18 12.1 15.2 2 8.8 2.8 2.5 1 1 2 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 PhoU PF01895.19 gi|257386093|ref|YP_003175866.1| - 0.2 12.1 5.2 0.12 12.9 2.0 2.1 1 1 1 2 2 2 0 PhoU domain Seryl_tRNA_N PF02403.22 gi|257386093|ref|YP_003175866.1| - 0.21 11.8 15.5 0.18 12.1 2.0 2.1 1 1 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain NPV_P10 PF05531.12 gi|257386093|ref|YP_003175866.1| - 0.25 11.8 8.8 1.3 9.5 0.6 2.3 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein FlgN PF05130.12 gi|257386093|ref|YP_003175866.1| - 0.28 11.7 13.6 0.38 11.3 13.6 1.1 1 0 0 1 1 1 0 FlgN protein Sigma70_ner PF04546.13 gi|257386093|ref|YP_003175866.1| - 0.31 10.9 16.9 0.084 12.7 3.6 2.1 1 1 1 2 2 2 0 Sigma-70, non-essential region GCN5L1 PF06320.13 gi|257386093|ref|YP_003175866.1| - 0.34 11.1 12.2 0.51 10.5 3.8 2.1 1 1 1 2 2 2 0 GCN5-like protein 1 (GCN5L1) DUF724 PF05266.14 gi|257386093|ref|YP_003175866.1| - 0.35 10.7 13.3 0.45 10.3 13.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF724) WXG100 PF06013.12 gi|257386093|ref|YP_003175866.1| - 0.36 11.1 11.8 3.8 7.8 5.3 2.5 2 1 0 2 2 2 0 Proteins of 100 residues with WXG Secretin_N PF03958.17 gi|257386093|ref|YP_003175866.1| - 0.37 11.2 3.5 2.8 8.4 0.0 2.4 2 1 0 2 2 2 0 Bacterial type II/III secretion system short domain DHR10 PF18595.1 gi|257386093|ref|YP_003175866.1| - 0.41 10.7 25.9 0.099 12.7 7.3 2.1 1 1 1 2 2 2 0 Designed helical repeat protein 10 domain Exonuc_VII_L PF02601.15 gi|257386093|ref|YP_003175866.1| - 0.41 10.2 5.9 0.51 9.9 5.9 1.1 1 0 0 1 1 1 0 Exonuclease VII, large subunit Lebercilin PF15619.6 gi|257386093|ref|YP_003175866.1| - 0.45 10.1 18.3 0.98 9.1 18.3 1.5 1 1 0 1 1 1 0 Ciliary protein causing Leber congenital amaurosis disease TraF_2 PF13729.6 gi|257386093|ref|YP_003175866.1| - 0.53 9.6 10.5 0.14 11.5 0.3 2.0 1 1 1 2 2 2 0 F plasmid transfer operon, TraF, protein PRP1_N PF06424.12 gi|257386093|ref|YP_003175866.1| - 0.57 10.6 10.4 0.81 10.1 10.4 1.2 1 0 0 1 1 1 0 PRP1 splicing factor, N-terminal Spc24 PF08286.11 gi|257386093|ref|YP_003175866.1| - 0.88 9.8 18.8 1.4 9.2 4.2 2.1 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 CENP-F_leu_zip PF10473.9 gi|257386093|ref|YP_003175866.1| - 1 9.4 22.1 2.3 8.2 6.3 2.1 1 1 1 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 MIS13 PF08202.11 gi|257386093|ref|YP_003175866.1| - 1.1 8.5 8.9 1.3 8.3 8.9 1.1 1 0 0 1 1 1 0 Mis12-Mtw1 protein family TPR_MLP1_2 PF07926.12 gi|257386093|ref|YP_003175866.1| - 1.1 9.3 23.6 6.3 6.9 23.6 1.9 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein PHM7_cyt PF14703.6 gi|257386093|ref|YP_003175866.1| - 1.2 9.4 6.0 1.8 8.8 6.0 1.2 1 0 0 1 1 1 0 Cytosolic domain of 10TM putative phosphate transporter ERM PF00769.19 gi|257386093|ref|YP_003175866.1| - 1.5 8.6 22.2 2.8 7.7 22.2 1.4 1 1 0 1 1 1 0 Ezrin/radixin/moesin family Baculo_PEP_C PF04513.12 gi|257386093|ref|YP_003175866.1| - 1.5 8.8 9.0 3 7.9 9.0 1.5 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus ZapB PF06005.12 gi|257386093|ref|YP_003175866.1| - 1.5 9.3 21.7 0.68 10.4 5.8 2.2 2 0 0 2 2 2 0 Cell division protein ZapB DUF4407 PF14362.6 gi|257386093|ref|YP_003175866.1| - 1.8 7.8 11.7 25 4.1 11.9 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) DUF3450 PF11932.8 gi|257386093|ref|YP_003175866.1| - 1.9 7.7 22.7 7 5.9 22.7 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF3450) Neuropep_like PF15161.6 gi|257386093|ref|YP_003175866.1| - 1.9 8.2 4.5 8.8 6.1 0.3 2.4 2 1 0 2 2 2 0 Neuropeptide-like DUF4795 PF16043.5 gi|257386093|ref|YP_003175866.1| - 2.3 7.8 17.3 7 6.2 17.3 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) Tropomyosin_1 PF12718.7 gi|257386093|ref|YP_003175866.1| - 2.4 8.3 23.4 6.3 6.9 23.4 1.6 1 1 0 1 1 1 0 Tropomyosin like Occludin_ELL PF07303.13 gi|257386093|ref|YP_003175866.1| - 2.5 8.9 11.2 2.9 8.7 2.2 2.1 1 1 1 2 2 2 0 Occludin homology domain YojJ PF10372.9 gi|257386093|ref|YP_003175866.1| - 2.5 8.2 8.5 3.3 7.9 0.6 2.5 2 1 0 2 2 2 0 Bacterial membrane-spanning protein N-terminus MutS_III PF05192.18 gi|257386093|ref|YP_003175866.1| - 2.8 8.1 6.6 3.5 7.8 6.6 1.1 1 0 0 1 1 1 0 MutS domain III Spc7 PF08317.11 gi|257386093|ref|YP_003175866.1| - 2.8 6.7 20.9 3.7 6.4 7.6 1.9 1 1 0 1 1 1 0 Spc7 kinetochore protein Prominin PF05478.11 gi|257386093|ref|YP_003175866.1| - 2.9 5.7 6.3 4.4 5.1 6.3 1.2 1 0 0 1 1 1 0 Prominin Sec34 PF04136.15 gi|257386093|ref|YP_003175866.1| - 3.1 7.7 13.6 3.6 7.4 2.0 2.1 1 1 1 2 2 2 0 Sec34-like family DUF3376 PF11856.8 gi|257386093|ref|YP_003175866.1| - 3.5 6.5 8.7 4.2 6.3 8.7 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF3376) DUF1664 PF07889.12 gi|257386093|ref|YP_003175866.1| - 3.6 7.6 10.7 22 5.1 10.7 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF1664) FUSC PF04632.12 gi|257386093|ref|YP_003175866.1| - 4 5.9 6.4 5.5 5.4 6.4 1.2 1 0 0 1 1 1 0 Fusaric acid resistance protein family DUF3086 PF11285.8 gi|257386093|ref|YP_003175866.1| - 4 6.5 9.6 0.46 9.5 1.9 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3086) FlxA PF14282.6 gi|257386093|ref|YP_003175866.1| - 4.1 7.5 19.9 0.73 9.9 2.4 2.2 2 0 0 2 2 2 0 FlxA-like protein Nup54 PF13874.6 gi|257386093|ref|YP_003175866.1| - 5.5 7.1 13.0 40 4.3 12.5 2.1 1 1 0 1 1 1 0 Nucleoporin complex subunit 54 Uds1 PF15456.6 gi|257386093|ref|YP_003175866.1| - 5.6 7.1 13.2 22 5.3 13.1 1.8 1 1 0 1 1 1 0 Up-regulated During Septation bZIP_1 PF00170.21 gi|257386093|ref|YP_003175866.1| - 5.9 7.1 14.6 0.071 13.2 3.4 2.3 2 1 0 2 2 2 0 bZIP transcription factor RasGAP_C PF03836.15 gi|257386093|ref|YP_003175866.1| - 5.9 7.0 12.9 5.4 7.2 4.4 2.1 1 1 1 2 2 2 0 RasGAP C-terminus DUF2098 PF09871.9 gi|257386093|ref|YP_003175866.1| - 6 7.3 12.5 0.34 11.3 2.5 2.1 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2098) PspA_IM30 PF04012.12 gi|257386093|ref|YP_003175866.1| - 6.5 6.3 20.7 20 4.7 20.8 1.6 1 1 0 1 1 1 0 PspA/IM30 family DASH_Dad2 PF08654.10 gi|257386093|ref|YP_003175866.1| - 7.7 7.0 12.2 12 6.4 3.7 2.4 2 1 0 2 2 2 0 DASH complex subunit Dad2 APG6_N PF17675.1 gi|257386093|ref|YP_003175866.1| - 9.6 6.7 31.5 5.5 7.5 12.9 2.1 1 1 1 2 2 2 0 Apg6 coiled-coil region Aldo_ket_red PF00248.21 gi|257386094|ref|YP_003175867.1| - 4.5e-52 177.1 0.0 8.1e-50 169.7 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family PhrC_PhrF PF11131.8 gi|257386095|ref|YP_003175868.1| - 2.5 7.8 3.9 0.44 10.2 0.3 1.7 2 0 0 2 2 2 0 Rap-phr extracellular signalling BAT PF15915.5 gi|257386096|ref|YP_003175869.1| - 9.4e-30 103.5 11.9 9.4e-30 103.5 11.9 3.6 3 0 0 3 3 3 1 GAF and HTH_10 associated domain HTH_10 PF04967.12 gi|257386096|ref|YP_003175869.1| - 2.3e-23 81.7 0.1 4.9e-23 80.7 0.1 1.6 1 0 0 1 1 1 1 HTH DNA binding domain GAF_2 PF13185.6 gi|257386096|ref|YP_003175869.1| - 2.1e-18 66.9 2.3 1.3e-17 64.4 0.8 2.7 2 0 0 2 2 2 1 GAF domain PAS_4 PF08448.10 gi|257386096|ref|YP_003175869.1| - 5.8e-15 55.5 4.2 5e-13 49.3 0.2 3.8 4 0 0 4 4 4 1 PAS fold PAS PF00989.25 gi|257386096|ref|YP_003175869.1| - 6e-13 48.8 0.0 1e-09 38.4 0.0 2.6 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|257386096|ref|YP_003175869.1| - 3.1e-12 46.6 0.0 3.5e-10 40.1 0.0 2.5 2 0 0 2 2 2 1 PAS domain PAS_8 PF13188.7 gi|257386096|ref|YP_003175869.1| - 4.4e-07 29.8 0.1 6.2e-05 22.9 0.0 2.9 2 0 0 2 2 2 1 PAS domain GAF_3 PF13492.6 gi|257386096|ref|YP_003175869.1| - 2.4e-05 24.7 0.0 5.7e-05 23.5 0.0 1.7 1 0 0 1 1 1 1 GAF domain PAS_7 PF12860.7 gi|257386096|ref|YP_003175869.1| - 8.9e-05 22.6 1.5 0.1 12.8 0.1 3.8 2 2 0 2 2 2 1 PAS fold PAS_3 PF08447.12 gi|257386096|ref|YP_003175869.1| - 0.00025 21.2 0.0 0.00053 20.2 0.0 1.5 1 0 0 1 1 1 1 PAS fold Sigma70_r4 PF04545.16 gi|257386096|ref|YP_003175869.1| - 0.00028 20.4 0.0 0.00028 20.4 0.0 2.3 2 0 0 2 2 1 1 Sigma-70, region 4 GAF PF01590.26 gi|257386096|ref|YP_003175869.1| - 0.00058 20.5 0.1 0.0017 19.0 0.1 1.8 1 0 0 1 1 1 1 GAF domain HTH_24 PF13412.6 gi|257386096|ref|YP_003175869.1| - 0.0021 17.5 0.6 0.012 15.2 0.0 2.3 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|257386096|ref|YP_003175869.1| - 0.0095 16.0 0.5 0.11 12.5 0.1 2.8 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|257386096|ref|YP_003175869.1| - 0.014 15.2 1.6 0.12 12.2 0.1 3.3 3 0 0 3 3 3 0 MarR family Sigma70_r4_2 PF08281.12 gi|257386096|ref|YP_003175869.1| - 0.025 14.3 0.1 0.1 12.3 0.1 2.0 1 1 0 1 1 1 0 Sigma-70, region 4 HTH_5 PF01022.20 gi|257386096|ref|YP_003175869.1| - 0.03 14.2 0.1 0.15 11.9 0.0 2.1 2 0 0 2 2 2 0 Bacterial regulatory protein, arsR family MamL-1 PF09596.10 gi|257386096|ref|YP_003175869.1| - 0.12 12.6 1.9 0.21 11.9 0.0 2.4 3 0 0 3 3 2 0 MamL-1 domain LexA_DNA_bind PF01726.16 gi|257386096|ref|YP_003175869.1| - 0.14 12.0 0.2 0.99 9.2 0.2 2.5 1 1 0 1 1 1 0 LexA DNA binding domain Pcc1 PF09341.10 gi|257386097|ref|YP_003175870.1| - 6.2e-10 39.1 0.1 7.4e-10 38.8 0.1 1.0 1 0 0 1 1 1 1 Transcription factor Pcc1 MDMPI_C PF07398.11 gi|257386097|ref|YP_003175870.1| - 0.017 16.0 2.1 0.02 15.7 2.1 1.2 1 0 0 1 1 1 0 MDMPI C-terminal domain DNA_RNApol_7kD PF03604.13 gi|257386098|ref|YP_003175871.1| - 1.7e-10 40.4 6.3 2.1e-10 40.1 6.3 1.1 1 0 0 1 1 1 1 DNA directed RNA polymerase, 7 kDa subunit zf-ribbon_3 PF13248.6 gi|257386098|ref|YP_003175871.1| - 5.5e-05 22.4 0.2 0.0044 16.4 0.0 2.1 2 0 0 2 2 2 1 zinc-ribbon domain HypA PF01155.19 gi|257386098|ref|YP_003175871.1| - 0.00089 19.3 0.5 0.00092 19.2 0.5 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf_UBZ PF18439.1 gi|257386098|ref|YP_003175871.1| - 0.0015 18.0 1.6 0.33 10.6 0.3 2.1 1 1 1 2 2 2 2 Ubiquitin-Binding Zinc Finger Zn_Tnp_IS1595 PF12760.7 gi|257386098|ref|YP_003175871.1| - 0.0036 17.2 4.6 0.077 13.0 0.1 2.1 2 0 0 2 2 2 1 Transposase zinc-ribbon domain A2L_zn_ribbon PF08792.10 gi|257386098|ref|YP_003175871.1| - 0.0047 16.6 0.8 0.28 10.9 2.1 2.0 1 1 1 2 2 2 2 A2L zinc ribbon domain zf-CHCC PF10276.9 gi|257386098|ref|YP_003175871.1| - 0.0053 16.8 0.4 0.0092 16.0 0.4 1.4 1 0 0 1 1 1 1 Zinc-finger domain Lar_restr_allev PF14354.6 gi|257386098|ref|YP_003175871.1| - 0.0094 16.3 0.4 0.084 13.3 0.0 1.9 1 1 1 2 2 2 1 Restriction alleviation protein Lar DZR PF12773.7 gi|257386098|ref|YP_003175871.1| - 0.0095 15.9 0.9 0.12 12.4 1.6 1.6 1 1 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|257386098|ref|YP_003175871.1| - 0.013 15.2 2.1 0.17 11.6 0.3 2.1 2 0 0 2 2 2 0 zinc-ribbon domain YacG PF03884.14 gi|257386098|ref|YP_003175871.1| - 0.014 15.1 0.2 0.33 10.7 0.0 2.0 2 0 0 2 2 2 0 DNA gyrase inhibitor YacG RNHCP PF12647.7 gi|257386098|ref|YP_003175871.1| - 0.019 14.9 0.3 0.021 14.8 0.3 1.1 1 0 0 1 1 1 0 RNHCP domain Sgf11 PF08209.11 gi|257386098|ref|YP_003175871.1| - 0.024 14.2 1.9 1.4 8.5 0.2 2.2 2 0 0 2 2 2 0 Sgf11 (transcriptional regulation protein) Cys_rich_CPXG PF14255.6 gi|257386098|ref|YP_003175871.1| - 0.027 14.4 0.2 0.092 12.7 0.0 2.0 2 0 0 2 2 2 0 Cysteine-rich CPXCG zf-Di19 PF05605.12 gi|257386098|ref|YP_003175871.1| - 0.04 14.2 0.2 0.48 10.8 0.0 2.0 2 0 0 2 2 2 0 Drought induced 19 protein (Di19), zinc-binding TF_Zn_Ribbon PF08271.12 gi|257386098|ref|YP_003175871.1| - 0.043 13.3 3.5 0.085 12.4 3.5 1.6 1 1 0 1 1 1 0 TFIIB zinc-binding zinc-ribbons_6 PF07191.12 gi|257386098|ref|YP_003175871.1| - 0.044 13.8 0.5 0.068 13.2 0.5 1.3 1 1 0 1 1 1 0 zinc-ribbons DUF951 PF06107.11 gi|257386098|ref|YP_003175871.1| - 0.046 13.6 1.3 2.6 8.0 0.1 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF951) Anti-TRAP PF15777.5 gi|257386098|ref|YP_003175871.1| - 0.052 13.5 0.1 0.06 13.3 0.1 1.2 1 0 0 1 1 1 0 Tryptophan RNA-binding attenuator protein inhibitory protein Spt4 PF06093.13 gi|257386098|ref|YP_003175871.1| - 0.064 13.4 0.2 0.075 13.1 0.2 1.0 1 0 0 1 1 1 0 Spt4/RpoE2 zinc finger DUF3268 PF11672.8 gi|257386098|ref|YP_003175871.1| - 0.1 13.0 1.0 0.39 11.1 0.1 1.9 1 1 1 2 2 2 0 zinc-finger-containing domain Thioredoxin_4 PF13462.6 gi|257386098|ref|YP_003175871.1| - 0.13 12.4 1.8 0.16 12.1 0.3 1.8 1 1 1 2 2 2 0 Thioredoxin OrfB_Zn_ribbon PF07282.11 gi|257386098|ref|YP_003175871.1| - 0.14 12.1 3.2 0.23 11.4 2.9 1.6 1 1 0 1 1 1 0 Putative transposase DNA-binding domain CpXC PF14353.6 gi|257386098|ref|YP_003175871.1| - 0.14 12.2 1.3 0.41 10.7 0.2 1.8 1 1 1 2 2 2 0 CpXC protein Herpes_UL33 PF03581.13 gi|257386098|ref|YP_003175871.1| - 0.15 12.5 0.1 0.16 12.4 0.1 1.0 1 0 0 1 1 1 0 Herpesvirus UL33-like protein Zn-ribbon_8 PF09723.10 gi|257386098|ref|YP_003175871.1| - 0.17 12.1 4.0 0.39 10.9 4.0 1.7 1 1 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_4 PF13717.6 gi|257386098|ref|YP_003175871.1| - 0.34 10.9 5.5 15 5.6 5.5 2.2 1 1 0 1 1 1 0 zinc-ribbon domain Ribosomal_L37ae PF01780.19 gi|257386099|ref|YP_003175872.1| - 1.1e-31 108.7 2.0 1.3e-31 108.5 2.0 1.1 1 0 0 1 1 1 1 Ribosomal L37ae protein family Zn_Tnp_IS1595 PF12760.7 gi|257386099|ref|YP_003175872.1| - 0.0023 17.9 1.5 0.004 17.1 1.5 1.4 1 0 0 1 1 1 1 Transposase zinc-ribbon domain zf-H2C2_2 PF13465.6 gi|257386099|ref|YP_003175872.1| - 0.003 17.9 1.2 0.41 11.2 0.1 2.2 2 0 0 2 2 2 1 Zinc-finger double domain Rep_fac-A_C PF08646.10 gi|257386099|ref|YP_003175872.1| - 0.013 15.2 0.3 0.018 14.8 0.3 1.1 1 0 0 1 1 1 0 Replication factor-A C terminal domain Rubredoxin PF00301.20 gi|257386099|ref|YP_003175872.1| - 0.025 14.6 6.2 1.1 9.3 0.3 2.3 2 0 0 2 2 2 0 Rubredoxin OrfB_Zn_ribbon PF07282.11 gi|257386099|ref|YP_003175872.1| - 0.04 13.8 0.9 0.069 13.1 0.9 1.4 1 0 0 1 1 1 0 Putative transposase DNA-binding domain C1_1 PF00130.22 gi|257386099|ref|YP_003175872.1| - 0.07 13.0 0.3 0.1 12.5 0.3 1.2 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) Elf1 PF05129.13 gi|257386099|ref|YP_003175872.1| - 0.072 13.1 0.0 0.097 12.7 0.0 1.3 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like zinc_ribbon_2 PF13240.6 gi|257386099|ref|YP_003175872.1| - 0.074 12.8 5.3 0.71 9.7 5.4 2.2 1 1 0 1 1 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|257386099|ref|YP_003175872.1| - 0.1 12.7 2.4 0.15 12.2 0.2 2.1 2 0 0 2 2 2 0 Zinc ribbon domain RNA_POL_M_15KD PF02150.16 gi|257386099|ref|YP_003175872.1| - 0.17 11.8 4.0 0.98 9.4 4.0 2.0 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit TF_Zn_Ribbon PF08271.12 gi|257386099|ref|YP_003175872.1| - 0.22 11.1 3.6 0.31 10.6 2.7 1.7 1 1 1 2 2 2 0 TFIIB zinc-binding zf-ribbon_3 PF13248.6 gi|257386099|ref|YP_003175872.1| - 0.3 10.6 7.2 0.98 8.9 0.5 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-ISL3 PF14690.6 gi|257386099|ref|YP_003175872.1| - 1.3 9.7 5.1 1.8 9.3 0.7 2.4 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 zf-C2H2 PF00096.26 gi|257386099|ref|YP_003175872.1| - 2.1 9.0 4.3 22 5.7 0.5 2.3 2 0 0 2 2 2 0 Zinc finger, C2H2 type UPF0547 PF10571.9 gi|257386099|ref|YP_003175872.1| - 4.2 7.5 9.2 4.8 7.3 1.2 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 UPF0016 PF01169.19 gi|257386100|ref|YP_003175873.1| - 9.3e-22 77.2 25.4 5.2e-15 55.5 4.8 2.8 3 0 0 3 3 3 2 Uncharacterized protein family UPF0016 DUF2103 PF09876.9 gi|257386101|ref|YP_003175874.1| - 2.7e-40 136.3 0.3 4.9e-40 135.5 0.3 1.4 1 0 0 1 1 1 1 Predicted metal-binding protein (DUF2103) acVLRF1 PF18859.1 gi|257386101|ref|YP_003175874.1| - 0.011 16.0 10.2 0.028 14.7 1.1 2.8 2 1 1 3 3 3 0 Actinobacteria/chloroflexi VLRF1 release factor zf-C3HC4_3 PF13920.6 gi|257386101|ref|YP_003175874.1| - 0.21 11.5 0.8 0.31 11.0 0.8 1.3 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) TruD PF01142.18 gi|257386102|ref|YP_003175875.1| - 1.6e-166 554.3 0.0 1.8e-166 554.1 0.0 1.0 1 0 0 1 1 1 1 tRNA pseudouridine synthase D (TruD) TerB PF05099.13 gi|257386102|ref|YP_003175875.1| - 0.028 14.4 0.3 1.6 8.7 0.2 2.4 2 0 0 2 2 2 0 Tellurite resistance protein TerB Proteasome PF00227.26 gi|257386103|ref|YP_003175876.1| - 1.4e-46 158.4 0.3 1.6e-46 158.2 0.3 1.0 1 0 0 1 1 1 1 Proteasome subunit Proteasome PF00227.26 gi|257386104|ref|YP_003175877.1| - 7.3e-60 201.7 0.0 9.1e-60 201.4 0.0 1.1 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.9 gi|257386104|ref|YP_003175877.1| - 8.6e-14 50.9 0.1 1.5e-13 50.1 0.1 1.4 1 0 0 1 1 1 1 Proteasome subunit A N-terminal signature PTH2 PF01981.16 gi|257386105|ref|YP_003175878.1| - 4.3e-38 130.2 0.1 4.7e-38 130.1 0.1 1.0 1 0 0 1 1 1 1 Peptidyl-tRNA hydrolase PTH2 DCD PF06559.11 gi|257386106|ref|YP_003175879.1| - 5e-26 91.3 0.0 2.9e-13 49.3 0.0 2.1 1 1 1 2 2 2 2 2'-deoxycytidine 5'-triphosphate deaminase (DCD) dUTPase PF00692.19 gi|257386106|ref|YP_003175879.1| - 2.5e-14 53.0 0.0 3.4e-14 52.6 0.0 1.2 1 0 0 1 1 1 1 dUTPase Cupin_2 PF07883.11 gi|257386106|ref|YP_003175879.1| - 0.086 12.6 0.1 0.9 9.3 0.1 2.4 2 0 0 2 2 2 0 Cupin domain ThiP_synth PF10120.9 gi|257386107|ref|YP_003175880.1| - 2.7e-51 173.5 0.3 4.6e-51 172.7 0.3 1.4 1 0 0 1 1 1 1 Thiamine-phosphate synthase HTH_3 PF01381.22 gi|257386107|ref|YP_003175880.1| - 1e-07 31.9 0.2 2.8e-07 30.5 0.2 1.9 1 1 0 1 1 1 1 Helix-turn-helix HTH_37 PF13744.6 gi|257386107|ref|YP_003175880.1| - 1.3e-05 25.1 0.1 2.4e-05 24.2 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|257386107|ref|YP_003175880.1| - 2.4e-05 24.6 0.8 8.7e-05 22.8 0.8 2.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 gi|257386107|ref|YP_003175880.1| - 7.8e-05 23.0 0.1 0.00016 22.1 0.1 1.5 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain MarR_2 PF12802.7 gi|257386107|ref|YP_003175880.1| - 0.0001 22.1 0.3 0.0017 18.2 0.0 2.9 3 0 0 3 3 2 1 MarR family Sigma70_r4 PF04545.16 gi|257386107|ref|YP_003175880.1| - 0.00018 21.0 0.0 0.00041 19.8 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_24 PF13412.6 gi|257386107|ref|YP_003175880.1| - 0.00022 20.7 0.1 0.00071 19.1 0.1 1.9 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_19 PF12844.7 gi|257386107|ref|YP_003175880.1| - 0.00043 20.2 0.1 0.00085 19.3 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|257386107|ref|YP_003175880.1| - 0.0011 18.7 0.1 0.0036 17.1 0.1 1.9 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_23 PF13384.6 gi|257386107|ref|YP_003175880.1| - 0.0047 16.7 0.0 0.011 15.5 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain YdaS_antitoxin PF15943.5 gi|257386107|ref|YP_003175880.1| - 0.0095 15.8 0.0 0.023 14.5 0.0 1.6 1 0 0 1 1 1 1 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT HTH_8 PF02954.19 gi|257386107|ref|YP_003175880.1| - 0.011 15.5 0.1 0.026 14.3 0.1 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family HTH_17 PF12728.7 gi|257386107|ref|YP_003175880.1| - 0.011 15.9 0.0 0.023 14.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_IclR PF09339.10 gi|257386107|ref|YP_003175880.1| - 0.016 15.0 0.9 0.17 11.7 0.1 2.8 2 0 0 2 2 2 0 IclR helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|257386107|ref|YP_003175880.1| - 0.018 14.7 0.1 0.041 13.6 0.1 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 P22_Cro PF14549.6 gi|257386107|ref|YP_003175880.1| - 0.023 14.5 0.1 0.06 13.2 0.1 1.7 1 0 0 1 1 1 0 DNA-binding transcriptional regulator Cro HTH_Tnp_ISL3 PF13542.6 gi|257386107|ref|YP_003175880.1| - 0.024 14.1 0.0 0.068 12.6 0.0 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_28 PF13518.6 gi|257386107|ref|YP_003175880.1| - 0.029 14.5 0.1 0.28 11.3 0.0 2.6 3 0 0 3 3 2 0 Helix-turn-helix domain MoCF_biosynth PF00994.24 gi|257386107|ref|YP_003175880.1| - 0.048 13.3 0.3 0.15 11.8 0.2 1.8 2 0 0 2 2 2 0 Probable molybdopterin binding domain HTH_10 PF04967.12 gi|257386107|ref|YP_003175880.1| - 0.065 13.0 0.1 0.23 11.3 0.0 2.0 2 0 0 2 2 1 0 HTH DNA binding domain HTH_1 PF00126.27 gi|257386107|ref|YP_003175880.1| - 0.067 13.2 0.5 0.28 11.2 0.1 2.1 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family MqsA_antitoxin PF15731.5 gi|257386107|ref|YP_003175880.1| - 0.076 13.1 0.0 0.14 12.2 0.0 1.4 1 0 0 1 1 1 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA HTH_35 PF13693.6 gi|257386107|ref|YP_003175880.1| - 0.11 12.6 0.6 0.54 10.3 0.1 2.3 3 0 0 3 3 2 0 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|257386107|ref|YP_003175880.1| - 0.18 11.8 0.0 2.4 8.2 0.0 2.5 2 0 0 2 2 2 0 MarR family Methyltransf_25 PF13649.6 gi|257386108|ref|YP_003175881.1| - 5.4e-09 36.6 0.1 1.2e-08 35.6 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|257386108|ref|YP_003175881.1| - 9.4e-09 35.8 0.1 2.1e-08 34.7 0.0 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|257386108|ref|YP_003175881.1| - 2e-07 31.0 0.0 4.8e-07 29.8 0.0 1.5 1 1 1 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|257386108|ref|YP_003175881.1| - 6.7e-06 26.0 0.0 8.5e-06 25.6 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|257386108|ref|YP_003175881.1| - 1.3e-05 24.7 0.0 1.6e-05 24.4 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|257386108|ref|YP_003175881.1| - 0.00011 22.9 0.0 0.00021 21.9 0.0 1.5 1 1 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|257386108|ref|YP_003175881.1| - 0.0014 18.5 0.0 0.002 17.9 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) FtsJ PF01728.19 gi|257386108|ref|YP_003175881.1| - 0.063 13.4 0.0 0.076 13.1 0.0 1.2 1 0 0 1 1 1 0 FtsJ-like methyltransferase HMGL-like PF00682.19 gi|257386110|ref|YP_003175883.1| - 6.6e-68 229.1 0.9 6.6e-68 229.1 0.9 1.6 2 0 0 2 2 2 1 HMGL-like LeuA_dimer PF08502.10 gi|257386110|ref|YP_003175883.1| - 1.1e-28 99.8 0.9 2.1e-28 98.9 0.9 1.5 1 0 0 1 1 1 1 LeuA allosteric (dimerisation) domain F_bP_aldolase PF01116.20 gi|257386110|ref|YP_003175883.1| - 0.0064 16.0 0.3 0.068 12.6 0.0 2.2 2 0 0 2 2 2 1 Fructose-bisphosphate aldolase class-II Cu_amine_oxidN1 PF07833.11 gi|257386110|ref|YP_003175883.1| - 0.021 15.3 0.2 0.056 13.9 0.2 1.7 1 0 0 1 1 1 0 Copper amine oxidase N-terminal domain AP_endonuc_2 PF01261.24 gi|257386110|ref|YP_003175883.1| - 0.033 13.6 0.5 0.095 12.1 0.1 2.0 2 0 0 2 2 2 0 Xylose isomerase-like TIM barrel DUF192 PF02643.15 gi|257386111|ref|YP_003175884.1| - 4.7e-24 84.4 0.0 6.3e-24 83.9 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized ACR, COG1430 RecA_dep_nuc PF16786.5 gi|257386112|ref|YP_003175885.1| - 0.033 14.3 0.2 0.063 13.4 0.2 1.5 1 0 0 1 1 1 0 Recombination enhancement, RecA-dependent nuclease C1_1 PF00130.22 gi|257386112|ref|YP_003175885.1| - 0.061 13.2 2.6 0.074 12.9 0.3 2.1 2 0 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) HNH PF01844.23 gi|257386112|ref|YP_003175885.1| - 0.16 12.1 3.2 0.38 11.0 3.2 1.7 1 0 0 1 1 1 0 HNH endonuclease HisKA_4TM PF16926.5 gi|257386113|ref|YP_003175886.1| - 1.2e-10 41.2 6.3 1.2e-10 41.2 6.3 1.8 2 0 0 2 2 2 1 Archaeal 4TM region of histidine kinase HATPase_c PF02518.26 gi|257386113|ref|YP_003175886.1| - 3.4e-09 37.2 0.0 5.9e-09 36.4 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|257386113|ref|YP_003175886.1| - 3.7e-05 23.7 0.1 7.1e-05 22.8 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.6 gi|257386113|ref|YP_003175886.1| - 0.00021 21.2 0.0 0.00053 19.8 0.0 1.6 1 0 0 1 1 1 1 GHKL domain HisKA PF00512.25 gi|257386113|ref|YP_003175886.1| - 0.0049 16.9 0.3 0.0096 15.9 0.3 1.5 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain LapA_dom PF06305.11 gi|257386113|ref|YP_003175886.1| - 0.02 14.7 0.0 0.074 12.9 0.0 1.9 1 0 0 1 1 1 0 Lipopolysaccharide assembly protein A domain Mtc PF03820.17 gi|257386113|ref|YP_003175886.1| - 0.086 11.9 0.3 0.13 11.3 0.3 1.3 1 0 0 1 1 1 0 Tricarboxylate carrier GATase PF00117.28 gi|257386114|ref|YP_003175887.1| - 9.8e-36 123.3 0.0 1.1e-35 123.1 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|257386114|ref|YP_003175887.1| - 3.4e-13 49.8 2.9 5.3e-12 46.0 0.6 2.8 1 1 1 2 2 2 1 Peptidase C26 GATase_3 PF07685.14 gi|257386114|ref|YP_003175887.1| - 0.27 10.8 0.8 0.92 9.1 0.8 1.9 1 1 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain DUF2070 PF09843.9 gi|257386115|ref|YP_003175888.1| - 3.6e-207 689.1 0.0 4e-207 689.0 0.0 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2070) DUF4131 PF13567.6 gi|257386115|ref|YP_003175888.1| - 0.077 12.6 0.1 0.077 12.6 0.1 3.0 2 1 2 4 4 4 0 Domain of unknown function (DUF4131) Peptidase_M3 PF01432.20 gi|257386116|ref|YP_003175889.1| - 9.8e-21 74.5 0.0 1.4e-20 74.0 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M3 Peptidase_M3_N PF08439.10 gi|257386116|ref|YP_003175889.1| - 0.049 13.9 0.0 0.18 12.1 0.0 2.0 1 0 0 1 1 1 0 Oligopeptidase F AAA_3 PF07726.11 gi|257386117|ref|YP_003175890.1| - 1.8e-66 221.9 0.1 3.2e-66 221.1 0.1 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|257386117|ref|YP_003175890.1| - 1.3e-19 69.8 5.1 1.3e-19 69.8 5.1 2.0 2 0 0 2 2 2 1 AAA lid domain AAA_5 PF07728.14 gi|257386117|ref|YP_003175890.1| - 2.8e-14 53.3 0.0 6.6e-14 52.1 0.0 1.6 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|257386117|ref|YP_003175890.1| - 6.7e-06 26.6 0.0 1.9e-05 25.1 0.0 1.8 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.21 gi|257386117|ref|YP_003175890.1| - 3e-05 23.5 0.2 0.026 13.9 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 gi|257386117|ref|YP_003175890.1| - 6.3e-05 22.7 0.0 0.001 18.8 0.0 2.2 1 1 0 1 1 1 1 Sigma-54 interaction domain MCM PF00493.23 gi|257386117|ref|YP_003175890.1| - 0.00033 19.8 0.0 0.00049 19.2 0.0 1.3 1 0 0 1 1 1 1 MCM P-loop domain RuvB_N PF05496.12 gi|257386117|ref|YP_003175890.1| - 0.0015 18.3 0.0 0.026 14.3 0.0 2.2 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_2 PF07724.14 gi|257386117|ref|YP_003175890.1| - 0.015 15.4 0.0 0.034 14.2 0.0 1.5 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) S_4TM PF18159.1 gi|257386118|ref|YP_003175891.1| - 0.34 10.2 7.3 1.7 7.9 0.1 2.1 2 0 0 2 2 2 0 SMODS-associating 4TM effector domain DUF58 PF01882.18 gi|257386119|ref|YP_003175892.1| - 1.3e-20 73.5 0.7 3.3e-20 72.2 0.7 1.7 1 0 0 1 1 1 1 Protein of unknown function DUF58 DUF11 PF01345.18 gi|257386119|ref|YP_003175892.1| - 6.4e-08 32.8 1.2 1.3e-07 31.9 0.2 2.0 2 0 0 2 2 2 1 Domain of unknown function DUF11 NPCBM_assoc PF10633.9 gi|257386119|ref|YP_003175892.1| - 0.046 14.0 0.1 0.15 12.3 0.1 1.9 1 0 0 1 1 1 0 NPCBM-associated, NEW3 domain of alpha-galactosidase Top6b_C PF18000.1 gi|257386119|ref|YP_003175892.1| - 0.071 13.3 0.0 2 8.6 0.0 2.4 2 0 0 2 2 2 0 Type 2 DNA topoisomerase 6 subunit B C-terminal domain ANTAR PF03861.14 gi|257386120|ref|YP_003175893.1| - 0.071 13.0 1.1 0.14 12.0 1.1 1.4 1 0 0 1 1 1 0 ANTAR domain DUF4129 PF13559.6 gi|257386121|ref|YP_003175894.1| - 8.8e-09 35.5 11.4 8.8e-09 35.5 11.4 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4129) Oxidored_q2 PF00420.24 gi|257386121|ref|YP_003175894.1| - 1.9 8.2 6.0 0.15 11.7 0.4 2.0 2 1 0 2 2 2 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Hydantoinase_B PF02538.14 gi|257386122|ref|YP_003175895.1| - 5.8e-197 655.2 8.7 6.6e-197 655.0 8.7 1.0 1 0 0 1 1 1 1 Hydantoinase B/oxoprolinase TQ PF18202.1 gi|257386122|ref|YP_003175895.1| - 0.074 13.6 0.0 0.18 12.4 0.0 1.6 1 0 0 1 1 1 0 T-Q ester bond containing domain Hydantoinase_A PF01968.18 gi|257386123|ref|YP_003175896.1| - 1.8e-94 316.3 13.7 8.3e-93 310.8 7.8 2.2 2 0 0 2 2 2 2 Hydantoinase/oxoprolinase Hydant_A_N PF05378.13 gi|257386123|ref|YP_003175896.1| - 1.2e-47 162.0 3.4 2.2e-47 161.1 0.2 2.5 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.6 gi|257386123|ref|YP_003175896.1| - 8e-05 21.4 8.2 0.027 13.1 1.3 2.6 3 0 0 3 3 3 2 MutL protein FtsA PF14450.6 gi|257386123|ref|YP_003175896.1| - 0.0014 19.0 1.7 0.31 11.5 0.1 2.5 2 0 0 2 2 2 2 Cell division protein FtsA EutA PF06277.11 gi|257386123|ref|YP_003175896.1| - 0.0043 16.0 0.3 0.0043 16.0 0.3 1.8 2 0 0 2 2 2 1 Ethanolamine utilisation protein EutA AglB_L1 PF18079.1 gi|257386125|ref|YP_003175898.1| - 0.12 12.6 0.3 0.12 12.6 0.3 2.4 3 1 0 3 3 3 0 Archaeal glycosylation protein B long peripheral domain bMG3 PF11974.8 gi|257386125|ref|YP_003175898.1| - 0.3 11.1 0.1 0.3 11.1 0.1 3.0 2 1 1 4 4 4 0 Bacterial alpha-2-macroglobulin MG3 domain Chorismate_bind PF00425.18 gi|257386126|ref|YP_003175899.1| - 2.2e-66 224.1 0.0 3e-66 223.6 0.0 1.2 1 0 0 1 1 1 1 chorismate binding enzyme VAPB_antitox PF02697.14 gi|257386127|ref|YP_003175900.1| - 0.00017 22.3 0.4 0.00017 22.3 0.4 1.1 1 0 0 1 1 1 1 Putative antitoxin Regulator_TrmB PF11495.8 gi|257386128|ref|YP_003175901.1| - 2.9e-44 151.0 0.0 3.6e-44 150.7 0.0 1.1 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.19 gi|257386128|ref|YP_003175901.1| - 2e-14 53.2 0.0 3.3e-14 52.5 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|257386128|ref|YP_003175901.1| - 0.019 14.8 0.0 0.038 13.9 0.0 1.5 1 0 0 1 1 1 0 MarR family DUF3209 PF11483.8 gi|257386128|ref|YP_003175901.1| - 0.025 15.1 0.1 0.062 13.8 0.1 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3209) HTH_29 PF13551.6 gi|257386128|ref|YP_003175901.1| - 0.031 14.3 0.0 0.055 13.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix AcetDehyd-dimer PF09290.11 gi|257386128|ref|YP_003175901.1| - 0.045 13.9 0.1 0.11 12.6 0.1 1.8 1 1 0 1 1 1 0 Prokaryotic acetaldehyde dehydrogenase, dimerisation Usp PF00582.26 gi|257386129|ref|YP_003175902.1| - 5.3e-08 33.5 0.7 7.6e-08 33.0 0.7 1.2 1 0 0 1 1 1 1 Universal stress protein family B12-binding PF02310.19 gi|257386129|ref|YP_003175902.1| - 0.0063 16.6 1.0 0.16 12.0 0.2 2.1 2 0 0 2 2 2 2 B12 binding domain ABC_tran PF00005.27 gi|257386131|ref|YP_003175904.1| - 3.5e-28 98.8 0.0 5.1e-28 98.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|257386131|ref|YP_003175904.1| - 1.2e-12 48.2 0.1 2.6e-12 47.1 0.1 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_22 PF13401.6 gi|257386131|ref|YP_003175904.1| - 1.6e-05 25.2 0.6 0.063 13.6 0.1 2.3 2 0 0 2 2 2 2 AAA domain AAA_21 PF13304.6 gi|257386131|ref|YP_003175904.1| - 0.0012 18.7 0.3 0.43 10.3 0.0 2.4 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 gi|257386131|ref|YP_003175904.1| - 0.0034 17.3 0.0 0.0066 16.4 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase NB-ARC PF00931.22 gi|257386131|ref|YP_003175904.1| - 0.029 13.6 0.9 0.041 13.1 0.1 1.6 2 0 0 2 2 2 0 NB-ARC domain SMC_N PF02463.19 gi|257386131|ref|YP_003175904.1| - 0.03 13.8 0.3 0.75 9.2 0.3 2.1 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|257386131|ref|YP_003175904.1| - 0.038 13.7 0.1 0.076 12.8 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|257386131|ref|YP_003175904.1| - 0.067 12.9 0.2 0.1 12.3 0.2 1.2 1 0 0 1 1 1 0 AAA ATPase domain AAA_16 PF13191.6 gi|257386131|ref|YP_003175904.1| - 0.09 13.1 0.1 0.16 12.3 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA PF00004.29 gi|257386131|ref|YP_003175904.1| - 0.093 13.2 0.1 0.78 10.2 0.0 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) TsaE PF02367.17 gi|257386131|ref|YP_003175904.1| - 0.099 12.6 0.0 0.17 11.9 0.0 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE MobB PF03205.14 gi|257386131|ref|YP_003175904.1| - 0.15 12.0 0.1 0.27 11.1 0.1 1.4 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B BCA_ABC_TP_C PF12399.8 gi|257386131|ref|YP_003175904.1| - 0.17 11.8 2.3 0.73 9.8 0.2 2.6 2 0 0 2 2 2 0 Branched-chain amino acid ATP-binding cassette transporter NACHT PF05729.12 gi|257386131|ref|YP_003175904.1| - 0.17 11.8 1.3 0.25 11.3 0.5 1.6 2 0 0 2 2 2 0 NACHT domain RNA_helicase PF00910.22 gi|257386131|ref|YP_003175904.1| - 0.18 12.2 0.0 0.37 11.2 0.0 1.5 1 0 0 1 1 1 0 RNA helicase ABC_tran PF00005.27 gi|257386132|ref|YP_003175905.1| - 9.5e-24 84.5 0.0 1.3e-23 84.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|257386132|ref|YP_003175905.1| - 1.8e-18 66.8 0.6 3.2e-18 66.0 0.6 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|257386132|ref|YP_003175905.1| - 8.8e-09 35.6 0.5 2.1e-07 31.1 0.5 2.4 3 0 0 3 3 3 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|257386132|ref|YP_003175905.1| - 0.0016 18.7 0.2 0.0074 16.6 0.2 2.0 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|257386132|ref|YP_003175905.1| - 0.0024 17.3 0.3 1 8.7 0.1 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|257386132|ref|YP_003175905.1| - 0.0036 17.7 0.0 0.0085 16.5 0.0 1.6 1 0 0 1 1 1 1 AAA ATPase domain ABC_ATPase PF09818.9 gi|257386132|ref|YP_003175905.1| - 0.0085 14.9 0.0 0.062 12.1 0.0 2.0 2 0 0 2 2 2 1 Predicted ATPase of the ABC class AAA_29 PF13555.6 gi|257386132|ref|YP_003175905.1| - 0.016 15.0 0.0 0.031 14.0 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain NACHT PF05729.12 gi|257386132|ref|YP_003175905.1| - 0.017 15.0 0.0 0.032 14.2 0.0 1.4 1 0 0 1 1 1 0 NACHT domain RsgA_GTPase PF03193.16 gi|257386132|ref|YP_003175905.1| - 0.025 14.5 0.0 0.04 13.8 0.0 1.2 1 0 0 1 1 1 0 RsgA GTPase AAA_25 PF13481.6 gi|257386132|ref|YP_003175905.1| - 0.04 13.5 0.0 0.28 10.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|257386132|ref|YP_003175905.1| - 0.066 12.9 0.1 0.4 10.4 0.0 2.0 2 0 0 2 2 2 0 IstB-like ATP binding protein MMR_HSR1 PF01926.23 gi|257386132|ref|YP_003175905.1| - 0.086 12.9 0.0 0.15 12.2 0.0 1.4 1 0 0 1 1 1 0 50S ribosome-binding GTPase RNA_helicase PF00910.22 gi|257386132|ref|YP_003175905.1| - 0.11 12.9 0.0 0.2 12.0 0.0 1.4 1 0 0 1 1 1 0 RNA helicase Sigma54_activat PF00158.26 gi|257386132|ref|YP_003175905.1| - 0.31 10.7 0.5 0.49 10.1 0.0 1.5 2 0 0 2 2 2 0 Sigma-54 interaction domain BPD_transp_1 PF00528.22 gi|257386133|ref|YP_003175906.1| - 8.1e-25 87.6 15.7 8.1e-25 87.6 15.7 2.1 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|257386134|ref|YP_003175907.1| - 1.1e-38 132.8 13.2 1.1e-38 132.8 13.2 1.7 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.22 gi|257386135|ref|YP_003175908.1| - 1.1e-41 143.1 2.5 1.1e-41 143.1 2.5 1.5 2 0 0 2 2 2 1 Bacterial extracellular solute-binding proteins, family 5 Middle Alpha-amylase PF00128.24 gi|257386136|ref|YP_003175909.1| - 1.2e-112 376.8 0.1 1.7e-112 376.3 0.1 1.1 1 0 0 1 1 1 1 Alpha amylase, catalytic domain Malt_amylase_C PF16657.5 gi|257386136|ref|YP_003175909.1| - 4.6e-13 49.1 0.0 1.6e-12 47.4 0.0 1.9 2 0 0 2 2 2 1 Maltogenic Amylase, C-terminal domain DUF3459 PF11941.8 gi|257386136|ref|YP_003175909.1| - 0.013 15.8 0.0 0.033 14.5 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF3459) hDGE_amylase PF14701.6 gi|257386136|ref|YP_003175909.1| - 0.053 12.6 0.0 0.082 12.0 0.0 1.2 1 0 0 1 1 1 0 Glycogen debranching enzyme, glucanotransferase domain Cyc-maltodext_C PF10438.9 gi|257386136|ref|YP_003175909.1| - 0.13 12.4 0.0 0.27 11.4 0.0 1.4 1 0 0 1 1 1 0 Cyclo-malto-dextrinase C-terminal domain Alpha-amylase PF00128.24 gi|257386137|ref|YP_003175910.1| - 5e-111 371.5 0.4 7.7e-111 370.9 0.4 1.2 1 0 0 1 1 1 1 Alpha amylase, catalytic domain Malt_amylase_C PF16657.5 gi|257386137|ref|YP_003175910.1| - 2.5e-10 40.3 0.0 4.5e-10 39.5 0.0 1.4 1 0 0 1 1 1 1 Maltogenic Amylase, C-terminal domain DUF3459 PF11941.8 gi|257386137|ref|YP_003175910.1| - 2.7e-05 24.4 0.0 0.00011 22.5 0.0 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF3459) Glyco_hydro_114 PF03537.13 gi|257386137|ref|YP_003175910.1| - 0.00036 19.9 1.7 0.52 9.6 0.6 2.7 2 1 0 2 2 2 2 Glycoside-hydrolase family GH114 Cyc-maltodext_C PF10438.9 gi|257386137|ref|YP_003175910.1| - 0.0022 18.0 0.0 0.0062 16.6 0.0 1.7 1 0 0 1 1 1 1 Cyclo-malto-dextrinase C-terminal domain hDGE_amylase PF14701.6 gi|257386137|ref|YP_003175910.1| - 0.0048 16.0 0.0 0.0079 15.3 0.0 1.2 1 0 0 1 1 1 1 Glycogen debranching enzyme, glucanotransferase domain HTH_24 PF13412.6 gi|257386138|ref|YP_003175911.1| - 6.5e-09 35.2 0.8 2e-05 24.0 0.1 2.3 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|257386138|ref|YP_003175911.1| - 6.7e-06 25.8 0.8 0.0015 18.4 0.5 2.6 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain Sigma70_r4 PF04545.16 gi|257386138|ref|YP_003175911.1| - 0.00015 21.2 0.0 0.00032 20.2 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 MarR_2 PF12802.7 gi|257386138|ref|YP_003175911.1| - 0.0002 21.1 0.1 0.00064 19.6 0.1 1.8 2 0 0 2 2 2 1 MarR family HTH_11 PF08279.12 gi|257386138|ref|YP_003175911.1| - 0.001 19.0 0.1 0.003 17.5 0.1 1.8 1 0 0 1 1 1 1 HTH domain MarR PF01047.22 gi|257386138|ref|YP_003175911.1| - 0.0029 17.5 0.0 0.0099 15.8 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_38 PF13936.6 gi|257386138|ref|YP_003175911.1| - 0.025 14.3 0.1 0.044 13.5 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain LXG PF04740.12 gi|257386138|ref|YP_003175911.1| - 0.035 13.8 0.3 0.062 13.0 0.3 1.3 1 0 0 1 1 1 0 LXG domain of WXG superfamily HTH_23 PF13384.6 gi|257386138|ref|YP_003175911.1| - 0.098 12.5 0.1 0.31 10.9 0.1 1.8 2 0 0 2 2 2 0 Homeodomain-like domain DUF4549 PF15082.6 gi|257386138|ref|YP_003175911.1| - 0.19 11.5 1.1 18 5.1 0.1 2.7 3 1 0 3 3 3 0 Domain of unknown function (DUF4549) HTH_Tnp_Tc3_2 PF01498.18 gi|257386138|ref|YP_003175911.1| - 0.19 12.0 2.5 8.8 6.7 0.4 2.7 3 0 0 3 3 3 0 Transposase Sigma70_ner PF04546.13 gi|257386138|ref|YP_003175911.1| - 0.39 10.6 8.0 5.9 6.7 5.5 2.1 2 0 0 2 2 2 0 Sigma-70, non-essential region HisKA PF00512.25 gi|257386138|ref|YP_003175911.1| - 0.56 10.3 3.5 7.6 6.6 0.1 3.0 3 0 0 3 3 3 0 His Kinase A (phospho-acceptor) domain SLD3 PF08639.10 gi|257386139|ref|YP_003175912.1| - 2.7 6.6 4.9 3.8 6.1 4.9 1.1 1 0 0 1 1 1 0 DNA replication regulator SLD3 CopC PF04234.12 gi|257386139|ref|YP_003175912.1| - 8.5 7.5 11.6 4.3 8.4 0.1 3.3 3 0 0 3 3 3 0 CopC domain DUF1573 PF07610.11 gi|257386140|ref|YP_003175913.1| - 3.3e-08 33.5 2.6 1.2e-07 31.6 2.6 2.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1573) ASH PF15780.5 gi|257386140|ref|YP_003175913.1| - 4.5e-07 30.0 0.6 2.1e-06 27.9 0.6 2.3 2 0 0 2 2 2 1 Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin Zn_peptidase_2 PF04298.12 gi|257386141|ref|YP_003175914.1| - 0.36 10.2 3.3 1.7 8.0 0.3 2.4 2 0 0 2 2 2 0 Putative neutral zinc metallopeptidase ABC2_membrane_5 PF13346.6 gi|257386141|ref|YP_003175914.1| - 6.8 6.2 11.9 0.13 11.8 3.4 2.4 3 0 0 3 3 3 0 ABC-2 family transporter protein VAPB_antitox PF02697.14 gi|257386142|ref|YP_003175915.1| - 2e-18 66.9 1.0 2e-18 66.9 1.0 1.5 1 1 1 2 2 2 1 Putative antitoxin PIN PF01850.21 gi|257386143|ref|YP_003175916.1| - 2.4e-07 31.3 0.0 2.6e-07 31.2 0.0 1.0 1 0 0 1 1 1 1 PIN domain DDE_Tnp_IS240 PF13610.6 gi|257386144|ref|YP_003175917.1| - 2.9e-13 50.3 0.0 3.9e-13 49.8 0.0 1.2 1 0 0 1 1 1 1 DDE domain DDE_Tnp_IS66 PF03050.14 gi|257386144|ref|YP_003175917.1| - 0.00031 20.3 0.3 0.0014 18.2 0.3 1.9 1 1 0 1 1 1 1 Transposase IS66 family rve PF00665.26 gi|257386144|ref|YP_003175917.1| - 0.0031 17.7 0.2 0.0054 16.9 0.2 1.4 1 0 0 1 1 1 1 Integrase core domain PknG_TPR PF16918.5 gi|257386144|ref|YP_003175917.1| - 0.025 13.3 0.1 0.049 12.4 0.0 1.4 1 1 0 1 1 1 0 Protein kinase G tetratricopeptide repeat ABC_tran PF00005.27 gi|257386145|ref|YP_003175918.1| - 1.8e-30 106.2 0.0 2.5e-30 105.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|257386145|ref|YP_003175918.1| - 0.00011 22.1 0.1 0.21 11.4 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|257386145|ref|YP_003175918.1| - 0.00015 22.2 1.0 0.00023 21.6 1.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 gi|257386145|ref|YP_003175918.1| - 0.00084 18.8 0.0 0.033 13.6 0.0 2.0 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain T2SSE PF00437.20 gi|257386145|ref|YP_003175918.1| - 0.003 16.7 0.1 0.0045 16.1 0.1 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein RsgA_GTPase PF03193.16 gi|257386145|ref|YP_003175918.1| - 0.0031 17.4 0.1 0.0083 16.0 0.1 1.6 2 0 0 2 2 2 1 RsgA GTPase AAA_29 PF13555.6 gi|257386145|ref|YP_003175918.1| - 0.0036 17.0 0.1 0.0078 15.9 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|257386145|ref|YP_003175918.1| - 0.021 14.5 0.4 0.028 14.1 0.4 1.5 1 1 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|257386145|ref|YP_003175918.1| - 0.069 13.1 0.0 0.11 12.5 0.0 1.2 1 0 0 1 1 1 0 Rad17 P-loop domain Sigma54_activat PF00158.26 gi|257386145|ref|YP_003175918.1| - 0.077 12.7 0.0 0.16 11.6 0.0 1.5 1 1 0 1 1 1 0 Sigma-54 interaction domain AAA_23 PF13476.6 gi|257386145|ref|YP_003175918.1| - 0.095 13.2 0.1 0.16 12.4 0.1 1.3 1 0 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|257386145|ref|YP_003175918.1| - 0.096 12.6 0.1 0.22 11.4 0.1 1.6 2 0 0 2 2 2 0 NACHT domain SRPRB PF09439.10 gi|257386145|ref|YP_003175918.1| - 0.11 11.9 0.1 0.21 11.0 0.0 1.5 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit Septin PF00735.18 gi|257386145|ref|YP_003175918.1| - 0.16 11.2 0.0 0.22 10.8 0.0 1.1 1 0 0 1 1 1 0 Septin G-alpha PF00503.20 gi|257386145|ref|YP_003175918.1| - 0.16 11.1 0.0 0.16 11.1 0.0 1.0 1 0 0 1 1 1 0 G-protein alpha subunit AAA_7 PF12775.7 gi|257386145|ref|YP_003175918.1| - 0.21 11.1 0.1 0.3 10.6 0.1 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_24 PF13479.6 gi|257386145|ref|YP_003175918.1| - 0.23 11.1 0.0 0.3 10.8 0.0 1.2 1 0 0 1 1 1 0 AAA domain cobW PF02492.19 gi|257386145|ref|YP_003175918.1| - 0.24 11.0 0.3 0.73 9.4 0.2 1.7 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain FtsX PF02687.21 gi|257386146|ref|YP_003175919.1| - 1.1e-08 35.4 17.6 3.4e-08 33.9 3.4 4.8 6 0 0 6 6 6 2 FtsX-like permease family CARDB PF07705.11 gi|257386146|ref|YP_003175919.1| - 1.4e-05 25.3 1.9 1.4e-05 25.3 1.9 3.2 3 0 0 3 3 3 1 CARDB ComJ PF11033.8 gi|257386146|ref|YP_003175919.1| - 0.15 11.8 0.1 0.49 10.1 0.0 1.8 2 0 0 2 2 2 0 Competence protein J (ComJ) DUF824 PF05688.11 gi|257386146|ref|YP_003175919.1| - 0.53 10.1 3.8 8.3 6.3 0.0 3.6 3 0 0 3 3 3 0 Salmonella repeat of unknown function (DUF824) DUF756 PF05506.12 gi|257386146|ref|YP_003175919.1| - 0.59 11.1 6.7 8.2 7.4 0.4 3.8 2 1 1 3 3 3 0 Domain of unknown function (DUF756) Cadherin-like PF12733.7 gi|257386146|ref|YP_003175919.1| - 2.6 8.6 12.8 6 7.5 3.3 3.3 3 0 0 3 3 3 0 Cadherin-like beta sandwich domain DUF1616 PF07760.11 gi|257386147|ref|YP_003175920.1| - 6.1e-117 390.2 0.1 7e-117 390.0 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) RHH_1 PF01402.21 gi|257386148|ref|YP_003175921.1| - 0.17 11.8 0.0 0.21 11.6 0.0 1.1 1 0 0 1 1 1 0 Ribbon-helix-helix protein, copG family DDE_Tnp_IS240 PF13610.6 gi|257386149|ref|YP_003175922.1| - 6.8e-15 55.5 0.0 9.8e-15 55.0 0.0 1.2 1 0 0 1 1 1 1 DDE domain rve PF00665.26 gi|257386149|ref|YP_003175922.1| - 5.8e-05 23.3 0.2 0.00017 21.7 0.2 1.8 1 1 1 2 2 2 1 Integrase core domain Hydrolase PF00702.26 gi|257386149|ref|YP_003175922.1| - 0.014 15.7 0.0 0.017 15.4 0.0 1.2 1 0 0 1 1 1 0 haloacid dehalogenase-like hydrolase DDE_Tnp_1_2 PF13586.6 gi|257386149|ref|YP_003175922.1| - 0.063 13.7 0.6 0.78 10.1 0.1 2.3 2 0 0 2 2 2 0 Transposase DDE domain DDE_Tnp_4 PF13359.6 gi|257386149|ref|YP_003175922.1| - 0.1 12.2 0.1 0.15 11.8 0.1 1.2 1 0 0 1 1 1 0 DDE superfamily endonuclease Glycos_transf_1 PF00534.20 gi|257386150|ref|YP_003175923.1| - 4e-25 88.3 0.0 5.8e-25 87.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|257386150|ref|YP_003175923.1| - 4.5e-17 62.7 0.0 6.4e-17 62.2 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|257386150|ref|YP_003175923.1| - 2.3e-07 30.9 0.0 3.7e-06 27.0 0.0 2.4 2 1 1 3 3 3 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|257386150|ref|YP_003175923.1| - 0.0018 18.6 0.0 0.0037 17.6 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|257386150|ref|YP_003175923.1| - 0.05 13.6 0.1 0.76 9.8 0.1 2.4 2 1 0 2 2 2 0 Glycosyl transferase 4-like Glycos_transf_2 PF00535.26 gi|257386151|ref|YP_003175924.1| - 1.5e-24 86.7 0.0 2.7e-24 85.9 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|257386151|ref|YP_003175924.1| - 1.8e-13 50.9 0.0 2.7e-13 50.3 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|257386151|ref|YP_003175924.1| - 1.3e-05 24.8 3.4 3e-05 23.7 0.2 2.3 2 1 0 2 2 2 1 Glycosyltransferase like family 2 ADK_lid PF05191.14 gi|257386151|ref|YP_003175924.1| - 0.051 13.6 0.0 6.6 6.8 0.1 2.5 2 0 0 2 2 2 0 Adenylate kinase, active site lid PBP_GOBP PF01395.22 gi|257386151|ref|YP_003175924.1| - 0.1 12.7 1.0 0.23 11.7 1.0 1.5 1 0 0 1 1 1 0 PBP/GOBP family GluR_Homer-bdg PF10606.9 gi|257386151|ref|YP_003175924.1| - 0.26 11.5 0.8 11 6.3 0.1 2.6 2 0 0 2 2 2 0 Homer-binding domain of metabotropic glutamate receptor DDE_Tnp_1 PF01609.21 gi|257386152|ref|YP_003175925.1| - 3.6e-07 30.0 0.0 3.7e-07 30.0 0.0 1.1 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_4 PF13701.6 gi|257386152|ref|YP_003175925.1| - 0.057 11.7 0.0 0.057 11.7 0.0 1.1 1 0 0 1 1 1 0 Transposase DDE domain group 1 DDE_5 PF13546.6 gi|257386153|ref|YP_003175926.1| - 0.001 18.5 0.0 0.0012 18.3 0.0 1.0 1 0 0 1 1 1 1 DDE superfamily endonuclease Glycos_transf_1 PF00534.20 gi|257386154|ref|YP_003175927.1| - 3.5e-20 72.2 0.4 6.1e-20 71.5 0.4 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|257386154|ref|YP_003175927.1| - 4.7e-18 65.9 0.0 6.8e-18 65.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|257386154|ref|YP_003175927.1| - 7.9e-08 32.6 0.0 1.4e-07 31.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|257386154|ref|YP_003175927.1| - 9.2e-05 22.5 0.0 0.00019 21.5 0.0 1.6 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Epimerase_2 PF02350.19 gi|257386154|ref|YP_003175927.1| - 0.00022 20.2 1.1 0.00076 18.4 1.1 1.7 1 1 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase DsbB PF02600.16 gi|257386155|ref|YP_003175928.1| - 0.016 15.6 0.4 0.25 11.8 0.1 3.0 2 1 0 2 2 2 0 Disulfide bond formation protein DsbB DDE_Tnp_1 PF01609.21 gi|257386156|ref|YP_003175929.1| - 5.2e-31 107.9 0.3 6.8e-31 107.6 0.3 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_4 PF13701.6 gi|257386156|ref|YP_003175929.1| - 0.012 13.9 0.1 0.031 12.5 0.1 1.6 1 1 1 2 2 2 0 Transposase DDE domain group 1 DDE_Tnp_2 PF04693.12 gi|257386156|ref|YP_003175929.1| - 0.012 14.9 0.1 0.016 14.5 0.1 1.2 1 0 0 1 1 1 0 Archaeal putative transposase ISC1217 Hepar_II_III PF07940.13 gi|257386157|ref|YP_003175930.1| - 1e-38 133.3 0.0 1.8e-38 132.5 0.0 1.4 1 0 0 1 1 1 1 Heparinase II/III-like protein Hepar_II_III_N PF16889.5 gi|257386157|ref|YP_003175930.1| - 1.1e-21 77.6 0.0 1.7e-21 76.9 0.0 1.3 1 0 0 1 1 1 1 Heparinase II/III N-terminus Glycos_transf_1 PF00534.20 gi|257386158|ref|YP_003175931.1| - 3.3e-20 72.3 0.0 4.9e-20 71.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|257386158|ref|YP_003175931.1| - 4.3e-19 69.3 0.0 1e-18 68.1 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|257386158|ref|YP_003175931.1| - 6.1e-16 59.3 0.0 1.7e-15 57.8 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.6 gi|257386158|ref|YP_003175931.1| - 3.7e-13 49.8 0.0 1.1e-12 48.3 0.0 1.8 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|257386158|ref|YP_003175931.1| - 7.9e-08 32.6 0.0 1.7e-07 31.5 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 UDPG_MGDP_dh_N PF03721.14 gi|257386159|ref|YP_003175932.1| - 3.3e-50 170.3 0.0 6.2e-50 169.4 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 gi|257386159|ref|YP_003175932.1| - 1.1e-23 83.2 0.0 3.2e-23 81.7 0.0 1.8 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 gi|257386159|ref|YP_003175932.1| - 3.4e-22 78.8 0.2 9.5e-21 74.2 0.2 2.7 1 1 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_binding_2 PF03446.15 gi|257386159|ref|YP_003175932.1| - 0.00023 21.4 0.0 0.00096 19.4 0.0 2.1 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|257386159|ref|YP_003175932.1| - 0.0031 16.9 0.1 0.058 12.8 0.0 2.5 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ApbA PF02558.16 gi|257386159|ref|YP_003175932.1| - 0.0039 16.8 0.1 0.016 14.9 0.0 2.1 3 0 0 3 3 3 1 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.18 gi|257386159|ref|YP_003175932.1| - 0.029 14.2 0.0 0.063 13.2 0.0 1.6 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TrkA_N PF02254.18 gi|257386159|ref|YP_003175932.1| - 0.03 14.6 0.7 5.1 7.4 0.0 2.9 3 0 0 3 3 3 0 TrkA-N domain Epimerase_2 PF02350.19 gi|257386160|ref|YP_003175933.1| - 4.1e-115 384.4 0.1 9e-115 383.2 0.1 1.5 2 0 0 2 2 2 1 UDP-N-acetylglucosamine 2-epimerase Glyco_trans_4_4 PF13579.6 gi|257386160|ref|YP_003175933.1| - 7.5e-06 26.5 0.0 2.2e-05 25.0 0.0 1.7 1 1 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.6 gi|257386160|ref|YP_003175933.1| - 0.0025 17.8 0.0 0.0073 16.3 0.0 1.9 1 1 0 1 1 1 1 Glycosyltransferase Family 4 DUF354 PF04007.12 gi|257386160|ref|YP_003175933.1| - 0.004 16.3 0.0 0.0054 15.8 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF354) Glycos_transf_2 PF00535.26 gi|257386161|ref|YP_003175934.1| - 2.8e-22 79.3 0.3 8.4e-22 77.8 0.1 1.8 2 0 0 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|257386161|ref|YP_003175934.1| - 4.4e-08 33.3 0.1 1.4e-07 31.7 0.1 1.9 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|257386161|ref|YP_003175934.1| - 0.00028 21.3 0.2 0.00084 19.8 0.1 1.8 2 0 0 2 2 2 1 Glycosyl transferase family 2 bMG3 PF11974.8 gi|257386163|ref|YP_003175936.1| - 0.0011 19.0 1.2 0.14 12.2 0.0 3.1 2 1 1 3 3 3 1 Bacterial alpha-2-macroglobulin MG3 domain Gram_pos_anchor PF00746.21 gi|257386163|ref|YP_003175936.1| - 0.0013 18.6 0.2 0.0031 17.4 0.2 1.6 1 0 0 1 1 1 1 LPXTG cell wall anchor motif FAM184 PF15665.5 gi|257386163|ref|YP_003175936.1| - 0.018 14.8 0.6 0.031 14.1 0.6 1.3 1 0 0 1 1 1 0 Family with sequence similarity 184, A and B TTR-52 PF01060.23 gi|257386163|ref|YP_003175936.1| - 0.11 13.2 0.0 4 8.2 0.0 2.5 2 0 0 2 2 2 0 Transthyretin-like family zf-ribbon_3 PF13248.6 gi|257386164|ref|YP_003175937.1| - 0.0015 17.9 1.4 0.55 9.7 0.1 2.1 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.7 gi|257386164|ref|YP_003175937.1| - 0.0031 17.5 0.7 0.0037 17.2 0.7 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-RING_7 PF02591.15 gi|257386164|ref|YP_003175937.1| - 0.0047 17.1 1.4 0.79 10.0 0.1 2.1 2 0 0 2 2 2 2 C4-type zinc ribbon domain zf-LITAF-like PF10601.9 gi|257386164|ref|YP_003175937.1| - 0.026 14.8 1.6 4.5 7.6 0.3 2.1 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain UPF0547 PF10571.9 gi|257386164|ref|YP_003175937.1| - 0.04 14.0 3.4 1.1 9.4 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zinc_ribbon_9 PF14369.6 gi|257386164|ref|YP_003175937.1| - 0.044 14.1 3.5 3.7 7.9 0.5 2.1 2 0 0 2 2 2 0 zinc-ribbon zinc_ribbon_13 PF09855.9 gi|257386164|ref|YP_003175937.1| - 0.069 13.3 0.5 0.21 11.8 0.1 1.8 2 0 0 2 2 2 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Zn_Tnp_IS1 PF03811.13 gi|257386164|ref|YP_003175937.1| - 0.12 12.2 3.9 0.8 9.5 0.2 2.1 2 0 0 2 2 2 0 InsA N-terminal domain zf-ACC PF17848.1 gi|257386164|ref|YP_003175937.1| - 0.12 12.4 2.1 7.5 6.7 0.1 2.3 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain zf-C4_Topoisom PF01396.19 gi|257386164|ref|YP_003175937.1| - 0.13 12.1 2.3 4.1 7.3 0.2 2.1 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger RNA_POL_M_15KD PF02150.16 gi|257386164|ref|YP_003175937.1| - 0.14 12.1 2.9 0.65 9.9 2.9 1.9 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit Zn-ribbon_8 PF09723.10 gi|257386164|ref|YP_003175937.1| - 0.39 10.9 6.5 1.4 9.1 5.6 2.0 1 1 1 2 2 2 0 Zinc ribbon domain DUF58 PF01882.18 gi|257386165|ref|YP_003175938.1| - 6.3e-24 84.1 0.1 2.2e-23 82.4 0.1 2.0 1 0 0 1 1 1 1 Protein of unknown function DUF58 DUF3040 PF11239.8 gi|257386167|ref|YP_003175940.1| - 0.0035 17.6 0.4 0.0089 16.3 0.4 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF3040) HALZ PF02183.18 gi|257386167|ref|YP_003175940.1| - 0.17 12.1 0.6 4.1 7.7 0.1 2.2 2 0 0 2 2 2 0 Homeobox associated leucine zipper ApoO PF09769.9 gi|257386167|ref|YP_003175940.1| - 0.53 10.3 3.3 1.6 8.7 1.8 2.3 2 1 0 2 2 2 0 Apolipoprotein O AAA_3 PF07726.11 gi|257386168|ref|YP_003175941.1| - 1.3e-62 209.5 0.3 3.2e-62 208.2 0.1 1.7 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|257386168|ref|YP_003175941.1| - 4.7e-18 64.8 2.3 1.1e-17 63.6 2.3 1.7 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|257386168|ref|YP_003175941.1| - 6.8e-18 65.0 0.0 1.4e-17 64.0 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) MCM PF00493.23 gi|257386168|ref|YP_003175941.1| - 1.5e-09 37.3 0.0 2.3e-09 36.7 0.0 1.3 1 0 0 1 1 1 1 MCM P-loop domain Sigma54_activat PF00158.26 gi|257386168|ref|YP_003175941.1| - 7e-05 22.6 0.1 0.00049 19.8 0.1 2.0 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA PF00004.29 gi|257386168|ref|YP_003175941.1| - 0.00013 22.4 0.0 0.00029 21.3 0.0 1.6 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.21 gi|257386168|ref|YP_003175941.1| - 0.00014 21.3 0.2 0.13 11.6 0.1 2.2 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI RuvB_N PF05496.12 gi|257386168|ref|YP_003175941.1| - 0.00015 21.6 0.1 0.0013 18.5 0.1 2.2 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|257386168|ref|YP_003175941.1| - 0.0034 17.8 1.1 0.008 16.6 1.1 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA_33 PF13671.6 gi|257386168|ref|YP_003175941.1| - 0.04 14.1 0.0 0.086 13.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain ATPase PF06745.13 gi|257386168|ref|YP_003175941.1| - 0.17 11.2 0.0 0.31 10.4 0.0 1.4 1 0 0 1 1 1 0 KaiC DUF4350 PF14258.6 gi|257386169|ref|YP_003175942.1| - 1.9e-08 34.6 2.6 5.5e-08 33.1 0.1 2.9 3 2 0 3 3 3 1 Domain of unknown function (DUF4350) ABC_transp_aux PF09822.9 gi|257386169|ref|YP_003175942.1| - 0.0083 15.6 0.0 0.012 15.1 0.0 1.2 1 0 0 1 1 1 1 ABC-type uncharacterized transport system PMT PF02366.18 gi|257386170|ref|YP_003175943.1| - 0.074 12.6 7.0 0.097 12.2 7.0 1.3 1 1 0 1 1 1 0 Dolichyl-phosphate-mannose-protein mannosyltransferase DUF2530 PF10745.9 gi|257386170|ref|YP_003175943.1| - 0.54 10.5 5.8 0.23 11.7 2.8 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF2530) YdjM PF04307.14 gi|257386171|ref|YP_003175944.1| - 4e-09 36.0 9.0 4.6e-09 35.8 9.0 1.2 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase SelA PF03841.13 gi|257386172|ref|YP_003175945.1| - 9.8e-10 38.0 3.3 2.2e-08 33.5 3.3 2.8 1 1 0 1 1 1 1 L-seryl-tRNA selenium transferase Aminotran_5 PF00266.19 gi|257386172|ref|YP_003175945.1| - 4.8e-09 35.6 0.0 2e-08 33.6 0.0 1.9 1 1 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|257386172|ref|YP_003175945.1| - 1.4e-06 27.9 0.9 2.2e-06 27.2 0.9 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Cys_Met_Meta_PP PF01053.20 gi|257386172|ref|YP_003175945.1| - 3.8e-06 25.7 0.0 5.5e-06 25.2 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme SepSecS PF05889.13 gi|257386172|ref|YP_003175945.1| - 0.00027 19.8 0.1 0.00044 19.0 0.0 1.6 2 1 0 2 2 2 1 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS Beta_elim_lyase PF01212.21 gi|257386172|ref|YP_003175945.1| - 0.023 14.0 0.0 0.049 12.9 0.0 1.6 1 0 0 1 1 1 0 Beta-eliminating lyase Aminotran_1_2 PF00155.21 gi|257386172|ref|YP_003175945.1| - 0.1 11.8 0.0 24 4.0 0.0 2.9 3 0 0 3 3 3 0 Aminotransferase class I and II MR_MLE_C PF13378.6 gi|257386173|ref|YP_003175946.1| - 3.1e-61 206.7 0.5 4.5e-61 206.2 0.5 1.2 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|257386173|ref|YP_003175946.1| - 1.5e-27 96.1 0.0 3.1e-27 95.1 0.0 1.5 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Peptidase_M19 PF01244.21 gi|257386173|ref|YP_003175946.1| - 0.0079 15.4 0.0 0.012 14.8 0.0 1.2 1 0 0 1 1 1 1 Membrane dipeptidase (Peptidase family M19) MTHFR PF02219.17 gi|257386173|ref|YP_003175946.1| - 0.21 10.9 0.0 0.3 10.4 0.0 1.1 1 0 0 1 1 1 0 Methylenetetrahydrofolate reductase IclR PF01614.18 gi|257386174|ref|YP_003175947.1| - 7.2e-23 80.8 0.2 1.7e-22 79.6 0.1 1.6 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|257386174|ref|YP_003175947.1| - 2.7e-12 46.3 0.0 6.6e-12 45.1 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|257386174|ref|YP_003175947.1| - 6e-09 35.6 0.0 1.4e-08 34.4 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|257386174|ref|YP_003175947.1| - 9.9e-08 31.4 0.0 2.4e-07 30.2 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|257386174|ref|YP_003175947.1| - 1.8e-07 31.0 0.0 3.6e-07 30.0 0.0 1.5 1 0 0 1 1 1 1 HTH domain Fe_dep_repress PF01325.19 gi|257386174|ref|YP_003175947.1| - 1e-06 28.8 0.1 2.4e-06 27.6 0.1 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.19 gi|257386174|ref|YP_003175947.1| - 9.8e-06 25.4 0.0 2.6e-05 24.0 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|257386174|ref|YP_003175947.1| - 1.6e-05 24.9 0.0 4.4e-05 23.5 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|257386174|ref|YP_003175947.1| - 5e-05 23.1 0.0 0.00014 21.6 0.0 1.8 1 0 0 1 1 1 1 MarR family HTH_10 PF04967.12 gi|257386174|ref|YP_003175947.1| - 0.0002 21.1 0.0 0.00046 19.9 0.0 1.6 1 0 0 1 1 1 1 HTH DNA binding domain Rrf2 PF02082.20 gi|257386174|ref|YP_003175947.1| - 0.00021 21.5 0.0 0.00046 20.5 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator HTH_DeoR PF08220.12 gi|257386174|ref|YP_003175947.1| - 0.00041 20.0 0.1 0.00078 19.1 0.1 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_28 PF13518.6 gi|257386174|ref|YP_003175947.1| - 0.00061 19.9 0.0 0.0027 17.8 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_7 PF02796.15 gi|257386174|ref|YP_003175947.1| - 0.0029 17.7 0.0 0.0056 16.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase MarR PF01047.22 gi|257386174|ref|YP_003175947.1| - 0.0031 17.4 0.0 0.0074 16.2 0.0 1.6 1 0 0 1 1 1 1 MarR family Mga PF05043.13 gi|257386174|ref|YP_003175947.1| - 0.0032 18.0 0.0 0.0055 17.3 0.0 1.3 1 0 0 1 1 1 1 Mga helix-turn-helix domain HTH_27 PF13463.6 gi|257386174|ref|YP_003175947.1| - 0.0051 17.3 0.1 0.011 16.2 0.1 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain FaeA PF04703.12 gi|257386174|ref|YP_003175947.1| - 0.0054 17.1 0.0 0.011 16.1 0.0 1.4 1 0 0 1 1 1 1 FaeA-like protein LexA_DNA_bind PF01726.16 gi|257386174|ref|YP_003175947.1| - 0.0055 16.5 0.0 0.011 15.4 0.0 1.5 1 0 0 1 1 1 1 LexA DNA binding domain HTH_34 PF13601.6 gi|257386174|ref|YP_003175947.1| - 0.0066 16.6 0.1 0.017 15.3 0.0 1.8 2 0 0 2 2 1 1 Winged helix DNA-binding domain FUR PF01475.19 gi|257386174|ref|YP_003175947.1| - 0.0072 16.5 0.1 0.022 14.9 0.0 1.8 2 0 0 2 2 1 1 Ferric uptake regulator family HTH_23 PF13384.6 gi|257386174|ref|YP_003175947.1| - 0.0078 16.0 0.0 0.018 14.8 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain HTH_22 PF13309.6 gi|257386174|ref|YP_003175947.1| - 0.0086 16.1 0.1 0.021 14.9 0.1 1.6 1 0 0 1 1 1 1 HTH domain GntR PF00392.21 gi|257386174|ref|YP_003175947.1| - 0.012 15.3 0.0 0.035 13.7 0.0 1.8 2 0 0 2 2 1 0 Bacterial regulatory proteins, gntR family SpoIIID PF12116.8 gi|257386174|ref|YP_003175947.1| - 0.015 15.4 0.1 0.036 14.2 0.1 1.5 1 0 0 1 1 1 0 Stage III sporulation protein D PadR PF03551.14 gi|257386174|ref|YP_003175947.1| - 0.019 14.9 0.2 0.048 13.6 0.0 1.8 2 0 0 2 2 1 0 Transcriptional regulator PadR-like family HTH_36 PF13730.6 gi|257386174|ref|YP_003175947.1| - 0.024 14.6 0.0 0.049 13.6 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_40 PF14493.6 gi|257386174|ref|YP_003175947.1| - 0.024 15.1 0.0 0.065 13.7 0.0 1.7 2 0 0 2 2 1 0 Helix-turn-helix domain HTH_45 PF14947.6 gi|257386174|ref|YP_003175947.1| - 0.033 14.2 0.0 0.062 13.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix IF2_N PF04760.15 gi|257386174|ref|YP_003175947.1| - 0.035 13.9 0.3 0.59 10.0 0.0 2.5 3 0 0 3 3 2 0 Translation initiation factor IF-2, N-terminal region B-block_TFIIIC PF04182.12 gi|257386174|ref|YP_003175947.1| - 0.04 14.1 0.0 0.06 13.5 0.0 1.3 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_Mga PF08280.11 gi|257386174|ref|YP_003175947.1| - 0.041 13.9 0.0 0.077 13.0 0.0 1.4 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain TFIIE_beta PF02186.15 gi|257386174|ref|YP_003175947.1| - 0.043 14.1 0.0 0.089 13.1 0.0 1.5 1 0 0 1 1 1 0 TFIIE beta subunit core domain LZ_Tnp_IS481 PF13011.6 gi|257386174|ref|YP_003175947.1| - 0.048 14.2 0.0 0.11 13.0 0.0 1.6 1 0 0 1 1 1 0 leucine-zipper of insertion element IS481 HTH_29 PF13551.6 gi|257386174|ref|YP_003175947.1| - 0.053 13.6 0.0 0.14 12.2 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn helix HTH_41 PF14502.6 gi|257386174|ref|YP_003175947.1| - 0.066 12.9 0.0 0.17 11.6 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_ECF PF07638.11 gi|257386174|ref|YP_003175947.1| - 0.074 12.9 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 ECF sigma factor HTH_Crp_2 PF13545.6 gi|257386174|ref|YP_003175947.1| - 0.081 12.9 0.0 0.24 11.4 0.0 1.8 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain NUMOD1 PF07453.13 gi|257386174|ref|YP_003175947.1| - 0.085 13.1 0.0 0.17 12.2 0.0 1.5 1 0 0 1 1 1 0 NUMOD1 domain ANT PF03374.14 gi|257386174|ref|YP_003175947.1| - 0.086 13.2 0.0 0.18 12.1 0.0 1.6 1 0 0 1 1 1 0 Phage antirepressor protein KilAC domain HTH_17 PF12728.7 gi|257386174|ref|YP_003175947.1| - 0.1 12.8 0.1 0.26 11.5 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain Phage_CI_repr PF07022.13 gi|257386174|ref|YP_003175947.1| - 0.1 12.7 0.0 0.14 12.3 0.0 1.2 1 0 0 1 1 1 0 Bacteriophage CI repressor helix-turn-helix domain DUF4432 PF14486.6 gi|257386175|ref|YP_003175948.1| - 2.4e-25 89.0 0.0 6.3e-25 87.6 0.0 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF4432) DUF5107 PF17128.4 gi|257386175|ref|YP_003175948.1| - 5.1e-05 22.6 0.0 0.00073 18.8 0.0 2.4 1 1 0 1 1 1 1 Domain of unknown function (DUF5107) DUF1926 PF09095.11 gi|257386175|ref|YP_003175948.1| - 0.011 15.4 0.0 1.7 8.2 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1926) Methyltransf_11 PF08241.12 gi|257386176|ref|YP_003175949.1| - 3.4e-08 34.0 0.1 5.2e-08 33.4 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|257386176|ref|YP_003175949.1| - 3.7e-08 34.0 0.1 7.6e-08 33.0 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|257386176|ref|YP_003175949.1| - 0.0008 20.1 0.1 0.0013 19.4 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|257386176|ref|YP_003175949.1| - 0.0018 18.1 0.0 0.0032 17.3 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Ketoacyl-synt_C PF02801.22 gi|257386176|ref|YP_003175949.1| - 0.0066 16.4 0.0 0.014 15.4 0.0 1.5 1 0 0 1 1 1 1 Beta-ketoacyl synthase, C-terminal domain Methyltransf_24 PF13578.6 gi|257386176|ref|YP_003175949.1| - 0.051 14.6 0.7 0.1 13.7 0.7 1.5 1 0 0 1 1 1 0 Methyltransferase domain Ubie_methyltran PF01209.18 gi|257386176|ref|YP_003175949.1| - 0.068 12.5 0.0 0.091 12.1 0.0 1.1 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family RrnaAD PF00398.20 gi|257386176|ref|YP_003175949.1| - 0.19 10.7 0.0 0.25 10.4 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Aldo_ket_red PF00248.21 gi|257386177|ref|YP_003175950.1| - 2.8e-19 69.4 0.0 3.1e-19 69.3 0.0 1.1 1 0 0 1 1 1 1 Aldo/keto reductase family DUF58 PF01882.18 gi|257386180|ref|YP_003175953.1| - 2.6e-19 69.3 0.3 7.7e-19 67.8 0.3 1.9 1 0 0 1 1 1 1 Protein of unknown function DUF58 DUF11 PF01345.18 gi|257386180|ref|YP_003175953.1| - 1.1e-09 38.5 3.0 2.3e-09 37.4 0.2 2.7 2 0 0 2 2 2 1 Domain of unknown function DUF11 NPCBM_assoc PF10633.9 gi|257386180|ref|YP_003175953.1| - 1.8e-05 24.9 1.7 1.8e-05 24.9 1.7 2.6 3 0 0 3 3 3 1 NPCBM-associated, NEW3 domain of alpha-galactosidase TRAP_beta PF05753.14 gi|257386180|ref|YP_003175953.1| - 0.0061 16.0 0.0 0.01 15.3 0.0 1.3 1 0 0 1 1 1 1 Translocon-associated protein beta (TRAPB) CARDB PF07705.11 gi|257386180|ref|YP_003175953.1| - 0.01 16.1 0.0 0.026 14.8 0.0 1.7 1 0 0 1 1 1 0 CARDB Phage_holin_3_6 PF07332.11 gi|257386180|ref|YP_003175953.1| - 3.7 7.6 16.1 0.51 10.4 3.0 3.0 3 0 0 3 3 3 0 Putative Actinobacterial Holin-X, holin superfamily III DUF4129 PF13559.6 gi|257386181|ref|YP_003175954.1| - 6.5e-08 32.7 7.4 6.5e-08 32.7 7.4 2.5 2 1 1 3 3 3 1 Domain of unknown function (DUF4129) DUF1772 PF08592.11 gi|257386181|ref|YP_003175954.1| - 0.0048 17.2 0.6 0.014 15.7 0.2 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF1772) DUF5134 PF17197.4 gi|257386181|ref|YP_003175954.1| - 0.087 12.7 8.7 0.9 9.4 2.5 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF5134) DAP10 PF07213.11 gi|257386181|ref|YP_003175954.1| - 2.4 8.2 6.2 12 5.9 0.1 3.3 3 0 0 3 3 3 0 DAP10 membrane protein MerC PF03203.14 gi|257386181|ref|YP_003175954.1| - 5.6 7.4 9.9 22 5.6 8.5 2.3 2 1 0 2 2 2 0 MerC mercury resistance protein SNF PF00209.18 gi|257386182|ref|YP_003175955.1| - 7.4e-45 153.6 27.1 1e-24 87.2 10.6 2.2 2 0 0 2 2 2 2 Sodium:neurotransmitter symporter family Inositol_P PF00459.25 gi|257386183|ref|YP_003175956.1| - 3e-46 158.1 2.2 3.7e-46 157.8 2.2 1.0 1 0 0 1 1 1 1 Inositol monophosphatase family ABC_tran PF00005.27 gi|257386184|ref|YP_003175957.1| - 1.4e-30 106.6 0.0 2.9e-30 105.6 0.0 1.5 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|257386184|ref|YP_003175957.1| - 5.5e-15 55.6 0.0 1.2e-14 54.5 0.0 1.6 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|257386184|ref|YP_003175957.1| - 2.8e-08 34.0 0.0 0.0019 18.1 0.1 2.7 3 0 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_22 PF13401.6 gi|257386184|ref|YP_003175957.1| - 0.00012 22.3 0.0 0.058 13.7 0.0 3.0 3 0 0 3 3 3 1 AAA domain SMC_N PF02463.19 gi|257386184|ref|YP_003175957.1| - 0.00061 19.3 0.0 0.11 11.9 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain DUF4881 PF16222.5 gi|257386184|ref|YP_003175957.1| - 0.008 16.0 0.0 0.016 15.0 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4881) AAA_16 PF13191.6 gi|257386184|ref|YP_003175957.1| - 0.027 14.8 0.3 0.15 12.5 0.0 2.2 2 0 0 2 2 2 0 AAA ATPase domain AAA_25 PF13481.6 gi|257386184|ref|YP_003175957.1| - 0.027 14.0 5.2 0.43 10.1 0.2 3.2 3 1 0 3 3 3 0 AAA domain AAA_13 PF13166.6 gi|257386184|ref|YP_003175957.1| - 0.045 12.4 0.0 0.64 8.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 gi|257386184|ref|YP_003175957.1| - 0.065 13.3 0.0 1.6 8.9 0.0 2.4 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_29 PF13555.6 gi|257386184|ref|YP_003175957.1| - 0.065 13.0 0.1 0.12 12.1 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain SbcCD_C PF13558.6 gi|257386184|ref|YP_003175957.1| - 0.11 12.7 0.1 1.3 9.3 0.1 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA PF00004.29 gi|257386184|ref|YP_003175957.1| - 0.18 12.2 0.0 0.7 10.3 0.0 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 gi|257386184|ref|YP_003175957.1| - 0.22 11.4 0.3 0.42 10.5 0.3 1.4 1 0 0 1 1 1 0 NACHT domain ABC_tran PF00005.27 gi|257386185|ref|YP_003175958.1| - 3e-31 108.7 0.0 4.3e-31 108.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|257386185|ref|YP_003175958.1| - 1.2e-19 70.6 0.9 2.1e-19 69.8 0.9 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|257386185|ref|YP_003175958.1| - 4.3e-08 33.3 0.2 1.6e-06 28.2 0.0 2.2 1 1 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|257386185|ref|YP_003175958.1| - 7.1e-06 25.6 0.0 1.1e-05 25.0 0.0 1.2 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|257386185|ref|YP_003175958.1| - 0.0005 20.3 0.0 0.0055 17.0 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|257386185|ref|YP_003175958.1| - 0.028 14.8 0.6 0.057 13.8 0.6 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_29 PF13555.6 gi|257386185|ref|YP_003175958.1| - 0.059 13.1 0.1 0.11 12.3 0.1 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain AIG1 PF04548.16 gi|257386185|ref|YP_003175958.1| - 0.14 11.5 0.8 0.22 10.8 0.8 1.3 1 0 0 1 1 1 0 AIG1 family RsgA_GTPase PF03193.16 gi|257386185|ref|YP_003175958.1| - 0.22 11.4 0.0 0.37 10.7 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_7 PF12775.7 gi|257386185|ref|YP_003175958.1| - 0.22 11.0 0.0 0.36 10.3 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region BPD_transp_1 PF00528.22 gi|257386186|ref|YP_003175959.1| - 1.4e-18 67.3 6.8 1.4e-18 67.3 6.8 2.3 3 0 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|257386186|ref|YP_003175959.1| - 5.8e-05 23.0 4.1 0.00021 21.2 0.0 3.6 3 1 1 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.22 gi|257386187|ref|YP_003175960.1| - 1.4e-33 116.2 9.2 1.4e-33 116.2 9.2 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.22 gi|257386188|ref|YP_003175961.1| - 2.8e-61 207.6 0.9 3.9e-61 207.1 0.9 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.9 gi|257386188|ref|YP_003175961.1| - 0.017 15.0 4.7 0.034 14.0 4.7 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.9 gi|257386188|ref|YP_003175961.1| - 0.17 11.2 0.5 0.34 10.3 0.5 1.5 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Transketolase_C PF02780.20 gi|257386189|ref|YP_003175962.1| - 0.028 14.3 0.0 0.055 13.4 0.0 1.4 1 0 0 1 1 1 0 Transketolase, C-terminal domain Flavodoxin_1 PF00258.25 gi|257386189|ref|YP_003175962.1| - 0.12 12.6 0.0 0.14 12.4 0.0 1.2 1 0 0 1 1 1 0 Flavodoxin RNA_pol_inhib PF16857.5 gi|257386189|ref|YP_003175962.1| - 0.14 12.0 0.6 0.33 10.8 0.0 1.9 2 0 0 2 2 2 0 RNA polymerase inhibitor Metallophos PF00149.28 gi|257386190|ref|YP_003175963.1| - 9.1e-17 62.2 0.2 1.1e-16 62.0 0.2 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|257386190|ref|YP_003175963.1| - 1.5e-09 38.3 2.3 4.2e-09 36.8 2.3 1.6 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_3 PF14582.6 gi|257386190|ref|YP_003175963.1| - 0.023 14.0 0.3 0.55 9.5 0.3 2.1 1 1 0 1 1 1 0 Metallophosphoesterase, calcineurin superfamily DUF530 PF04409.12 gi|257386191|ref|YP_003175964.1| - 0.003 16.0 0.0 0.0042 15.5 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF530) IF-2B PF01008.17 gi|257386191|ref|YP_003175964.1| - 0.11 11.6 0.1 0.15 11.2 0.1 1.1 1 0 0 1 1 1 0 Initiation factor 2 subunit family MR_MLE_C PF13378.6 gi|257386192|ref|YP_003175965.1| - 2.2e-52 177.8 1.2 2.9e-52 177.4 1.2 1.1 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|257386192|ref|YP_003175965.1| - 1.9e-23 82.9 0.0 4.1e-23 81.8 0.0 1.5 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain IclR PF01614.18 gi|257386193|ref|YP_003175966.1| - 2.2e-07 30.7 0.1 9.9e-07 28.6 0.1 1.9 1 1 0 1 1 1 1 Bacterial transcriptional regulator HTH_20 PF12840.7 gi|257386193|ref|YP_003175966.1| - 4.8e-07 29.7 0.1 1.2e-06 28.5 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|257386193|ref|YP_003175966.1| - 7.3e-07 28.9 0.1 2e-06 27.5 0.1 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|257386193|ref|YP_003175966.1| - 9e-06 25.2 0.0 1.7e-05 24.3 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding RP-C PF03428.13 gi|257386193|ref|YP_003175966.1| - 0.00083 19.1 0.1 0.0024 17.6 0.0 1.7 2 0 0 2 2 2 1 Replication protein C N-terminal domain MarR_2 PF12802.7 gi|257386193|ref|YP_003175966.1| - 0.00092 19.1 0.1 0.0025 17.7 0.1 1.7 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|257386193|ref|YP_003175966.1| - 0.0013 18.5 0.0 0.0027 17.5 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|257386193|ref|YP_003175966.1| - 0.0033 17.3 0.0 0.0061 16.4 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|257386193|ref|YP_003175966.1| - 0.0036 17.2 0.0 0.0077 16.1 0.0 1.5 1 0 0 1 1 1 1 HTH domain MarR PF01047.22 gi|257386193|ref|YP_003175966.1| - 0.012 15.5 0.0 0.024 14.5 0.0 1.5 1 0 0 1 1 1 0 MarR family HTH_45 PF14947.6 gi|257386193|ref|YP_003175966.1| - 0.14 12.1 0.0 0.35 10.9 0.0 1.5 2 0 0 2 2 2 0 Winged helix-turn-helix MR_MLE_C PF13378.6 gi|257386194|ref|YP_003175967.1| - 1.5e-67 227.4 1.7 2.1e-67 226.9 1.7 1.2 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|257386194|ref|YP_003175967.1| - 2.3e-27 95.5 0.0 4.5e-27 94.6 0.0 1.4 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain adh_short_C2 PF13561.6 gi|257386195|ref|YP_003175968.1| - 1.6e-67 227.5 0.1 2e-67 227.2 0.1 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|257386195|ref|YP_003175968.1| - 1.2e-51 175.0 0.1 1.5e-51 174.6 0.1 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|257386195|ref|YP_003175968.1| - 1.6e-14 54.2 0.1 2e-14 53.9 0.1 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|257386195|ref|YP_003175968.1| - 0.00011 21.7 0.1 0.00019 21.0 0.1 1.4 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family NmrA PF05368.13 gi|257386195|ref|YP_003175968.1| - 0.091 12.3 0.4 0.15 11.6 0.4 1.3 1 0 0 1 1 1 0 NmrA-like family DHH PF01368.20 gi|257386196|ref|YP_003175969.1| - 1.9e-10 40.9 1.5 2e-10 40.8 0.5 1.5 2 0 0 2 2 2 1 DHH family DHHA1 PF02272.19 gi|257386196|ref|YP_003175969.1| - 1.2e-05 25.7 0.6 3.4e-05 24.3 0.1 1.9 2 0 0 2 2 2 1 DHHA1 domain AMP-binding PF00501.28 gi|257386197|ref|YP_003175970.1| - 3.9e-92 309.0 0.0 4.6e-92 308.8 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|257386197|ref|YP_003175970.1| - 4.9e-19 69.1 0.3 2.2e-18 67.0 0.1 2.2 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain T2SSE PF00437.20 gi|257386198|ref|YP_003175971.1| - 5.7e-26 91.2 0.0 9.5e-26 90.4 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_23 PF13476.6 gi|257386198|ref|YP_003175971.1| - 0.00097 19.7 0.0 0.0017 18.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|257386198|ref|YP_003175971.1| - 0.0035 17.3 0.0 0.0069 16.3 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_7 PF12775.7 gi|257386198|ref|YP_003175971.1| - 0.0037 16.8 0.0 0.0064 16.0 0.0 1.3 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_22 PF13401.6 gi|257386198|ref|YP_003175971.1| - 0.0051 17.1 0.1 0.05 13.9 0.0 2.5 2 1 1 3 3 3 1 AAA domain AAA_29 PF13555.6 gi|257386198|ref|YP_003175971.1| - 0.0065 16.2 0.0 0.013 15.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_33 PF13671.6 gi|257386198|ref|YP_003175971.1| - 0.013 15.7 1.7 0.025 14.7 0.1 2.3 2 1 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|257386198|ref|YP_003175971.1| - 0.12 12.7 0.3 0.75 10.2 0.0 2.4 3 0 0 3 3 3 0 AAA ATPase domain AAA PF00004.29 gi|257386198|ref|YP_003175971.1| - 0.26 11.7 0.7 0.69 10.3 0.2 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) T2SSF PF00482.23 gi|257386199|ref|YP_003175972.1| - 4.4e-22 78.3 7.6 1.7e-10 40.9 1.7 3.4 3 0 0 3 3 3 2 Type II secretion system (T2SS), protein F Pilin_N PF07790.11 gi|257386200|ref|YP_003175973.1| - 0.00026 21.9 0.2 0.00057 20.8 0.2 1.6 1 0 0 1 1 1 1 Archaeal Type IV pilin, N-terminal Ureide_permease PF07168.11 gi|257386201|ref|YP_003175974.1| - 0.22 10.3 0.0 0.27 9.9 0.0 1.1 1 0 0 1 1 1 0 Ureide permease LapA_dom PF06305.11 gi|257386203|ref|YP_003175976.1| - 0.76 9.6 2.8 1.4 8.8 2.8 1.4 1 0 0 1 1 1 0 Lipopolysaccharide assembly protein A domain DUF3592 PF12158.8 gi|257386204|ref|YP_003175977.1| - 2.5e-21 76.3 1.0 4.1e-21 75.6 1.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3592) YjbE PF11106.8 gi|257386204|ref|YP_003175977.1| - 0.014 15.6 5.0 0.1 12.8 0.9 2.4 2 0 0 2 2 2 0 Exopolysaccharide production protein YjbE DUF202 PF02656.15 gi|257386204|ref|YP_003175977.1| - 0.092 13.2 0.1 1.4 9.5 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF202) DUF2500 PF10694.9 gi|257386204|ref|YP_003175977.1| - 0.11 13.0 0.0 0.17 12.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2500) SpoIIIAH PF12685.7 gi|257386204|ref|YP_003175977.1| - 0.15 11.9 0.2 0.17 11.7 0.2 1.1 1 0 0 1 1 1 0 SpoIIIAH-like protein MarR_2 PF12802.7 gi|257386206|ref|YP_003175979.1| - 9.5e-05 22.2 0.2 0.00021 21.1 0.2 1.5 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|257386206|ref|YP_003175979.1| - 0.0076 16.0 0.1 0.021 14.6 0.1 1.8 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_29 PF13551.6 gi|257386206|ref|YP_003175979.1| - 0.0084 16.1 0.1 0.021 14.8 0.1 1.8 1 1 0 1 1 1 1 Winged helix-turn helix HTH_Crp_2 PF13545.6 gi|257386206|ref|YP_003175979.1| - 0.024 14.6 0.2 0.052 13.5 0.2 1.6 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain TrmB PF01978.19 gi|257386206|ref|YP_003175979.1| - 0.034 14.0 0.0 0.068 13.1 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_23 PF13384.6 gi|257386206|ref|YP_003175979.1| - 0.13 12.1 1.2 0.38 10.6 0.1 2.3 2 0 0 2 2 2 0 Homeodomain-like domain HTH_5 PF01022.20 gi|257386206|ref|YP_003175979.1| - 0.16 11.8 0.0 0.3 11.0 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|257386207|ref|YP_003175980.1| - 2e-05 24.4 0.0 2.4e-05 24.2 0.0 1.2 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.7 gi|257386207|ref|YP_003175980.1| - 7.6e-05 22.7 0.0 9.9e-05 22.3 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_17 PF12728.7 gi|257386207|ref|YP_003175980.1| - 0.00022 21.3 0.0 0.00037 20.6 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Mga PF08280.11 gi|257386207|ref|YP_003175980.1| - 0.0037 17.3 0.1 0.0053 16.8 0.1 1.3 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain Sigma70_r4 PF04545.16 gi|257386207|ref|YP_003175980.1| - 0.0055 16.2 0.0 0.0091 15.5 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_23 PF13384.6 gi|257386207|ref|YP_003175980.1| - 0.012 15.4 0.0 0.016 15.0 0.0 1.2 1 0 0 1 1 1 0 Homeodomain-like domain SgrR_N PF12793.7 gi|257386207|ref|YP_003175980.1| - 0.017 15.3 0.0 0.018 15.2 0.0 1.1 1 0 0 1 1 1 0 Sugar transport-related sRNA regulator N-term HTH_Crp_2 PF13545.6 gi|257386207|ref|YP_003175980.1| - 0.024 14.6 0.0 0.025 14.5 0.0 1.2 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_30 PF13556.6 gi|257386207|ref|YP_003175980.1| - 0.054 13.3 0.0 0.06 13.2 0.0 1.1 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain DUF4224 PF13986.6 gi|257386207|ref|YP_003175980.1| - 0.054 13.4 0.1 0.21 11.5 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4224) UPF0175 PF03683.13 gi|257386207|ref|YP_003175980.1| - 0.085 12.6 0.2 0.15 11.8 0.0 1.5 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0175) HTH_29 PF13551.6 gi|257386207|ref|YP_003175980.1| - 0.14 12.2 0.0 0.18 11.9 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn helix HTH_7 PF02796.15 gi|257386207|ref|YP_003175980.1| - 0.15 12.2 0.0 0.22 11.7 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase DUF1670 PF07900.11 gi|257386207|ref|YP_003175980.1| - 0.19 11.1 0.0 0.2 11.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1670) CbiA PF01656.23 gi|257386209|ref|YP_003175982.1| - 4.1e-16 59.2 0.0 6.7e-16 58.5 0.0 1.3 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|257386209|ref|YP_003175982.1| - 2.3e-11 43.7 0.7 3.2e-10 39.9 0.7 2.4 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase AAA_31 PF13614.6 gi|257386209|ref|YP_003175982.1| - 3.9e-11 43.2 0.0 6.3e-11 42.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain Fer4_NifH PF00142.18 gi|257386209|ref|YP_003175982.1| - 1.4e-08 34.5 0.0 1.4e-05 24.7 0.0 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family CBP_BcsQ PF06564.12 gi|257386209|ref|YP_003175982.1| - 7.1e-06 25.7 0.2 1.3e-05 24.8 0.2 1.6 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ ArsA_ATPase PF02374.15 gi|257386209|ref|YP_003175982.1| - 0.00023 20.4 0.4 0.0029 16.8 0.3 2.1 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_26 PF13500.6 gi|257386209|ref|YP_003175982.1| - 0.00066 19.6 0.2 0.0053 16.6 0.2 2.3 1 1 0 1 1 1 1 AAA domain MipZ PF09140.11 gi|257386209|ref|YP_003175982.1| - 0.002 17.5 2.2 0.0087 15.4 2.2 1.9 1 1 0 1 1 1 1 ATPase MipZ AAA_30 PF13604.6 gi|257386209|ref|YP_003175982.1| - 0.02 14.6 0.9 0.039 13.7 0.9 1.5 1 0 0 1 1 1 0 AAA domain VirC1 PF07015.11 gi|257386209|ref|YP_003175982.1| - 0.031 13.6 0.3 0.054 12.8 0.3 1.4 1 0 0 1 1 1 0 VirC1 protein AAA_24 PF13479.6 gi|257386209|ref|YP_003175982.1| - 0.034 13.9 0.0 0.047 13.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain PIF1 PF05970.14 gi|257386209|ref|YP_003175982.1| - 0.045 12.9 0.1 0.065 12.4 0.1 1.3 1 0 0 1 1 1 0 PIF1-like helicase CLP1_P PF16575.5 gi|257386209|ref|YP_003175982.1| - 0.18 11.6 0.0 0.3 10.9 0.0 1.4 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_6 PF12774.7 gi|257386209|ref|YP_003175982.1| - 0.22 10.5 0.3 0.32 9.9 0.3 1.1 1 0 0 1 1 1 0 Hydrolytic ATP binding site of dynein motor region AAA_33 PF13671.6 gi|257386209|ref|YP_003175982.1| - 0.24 11.6 4.0 7.4 6.7 4.0 2.2 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|257386209|ref|YP_003175982.1| - 0.28 10.7 5.7 1.6 8.3 5.7 2.1 1 1 1 2 2 2 0 AAA domain FG-GAP PF01839.23 gi|257386210|ref|YP_003175983.1| - 3.8e-32 110.0 98.6 6.2e-09 35.8 9.9 7.5 7 0 0 7 7 7 6 FG-GAP repeat FG-GAP_2 PF14312.6 gi|257386210|ref|YP_003175983.1| - 1.2e-17 63.8 78.3 4.4e-05 23.6 3.8 8.1 7 0 0 7 7 7 7 FG-GAP repeat PT PF04886.12 gi|257386210|ref|YP_003175983.1| - 3e-07 29.9 329.5 0.12 11.9 34.0 10.0 2 1 2 4 4 4 2 PT repeat VCBS PF13517.6 gi|257386210|ref|YP_003175983.1| - 3.7e-06 27.4 49.4 0.0001 22.8 10.0 5.2 4 1 1 5 5 5 4 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella CobA_CobO_BtuR PF02572.15 gi|257386211|ref|YP_003175984.1| - 1.2e-49 168.9 0.0 1.4e-49 168.7 0.0 1.0 1 0 0 1 1 1 1 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CbiA PF01656.23 gi|257386211|ref|YP_003175984.1| - 0.059 13.4 0.0 0.067 13.2 0.0 1.3 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain CbiZ PF01955.18 gi|257386212|ref|YP_003175985.1| - 4.6e-41 141.0 1.7 5.7e-41 140.7 1.7 1.1 1 0 0 1 1 1 1 Adenosylcobinamide amidohydrolase Aminotran_1_2 PF00155.21 gi|257386213|ref|YP_003175986.1| - 7.6e-28 97.7 0.0 1e-27 97.3 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|257386213|ref|YP_003175986.1| - 8.2e-05 22.1 0.2 0.00018 20.9 0.1 1.5 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family NTP_transf_3 PF12804.7 gi|257386214|ref|YP_003175987.1| - 8.4e-21 75.0 4.5 9.3e-21 74.8 3.8 1.2 1 1 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|257386214|ref|YP_003175987.1| - 0.00012 21.9 0.0 0.00028 20.7 0.0 1.6 2 0 0 2 2 2 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NTP_transferase PF00483.23 gi|257386214|ref|YP_003175987.1| - 0.00033 20.3 0.0 0.00047 19.8 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase CTP_transf_3 PF02348.19 gi|257386214|ref|YP_003175987.1| - 0.00049 20.1 0.0 0.00064 19.7 0.0 1.3 1 1 0 1 1 1 1 Cytidylyltransferase CobS PF02654.15 gi|257386215|ref|YP_003175988.1| - 1.6e-36 126.4 23.4 1.9e-36 126.2 23.4 1.0 1 0 0 1 1 1 1 Cobalamin-5-phosphate synthase CobD_Cbib PF03186.13 gi|257386216|ref|YP_003175989.1| - 8.2e-68 228.6 17.8 1.1e-67 228.2 17.8 1.2 1 0 0 1 1 1 1 CobD/Cbib protein Hydrolase PF00702.26 gi|257386217|ref|YP_003175990.1| - 6.9e-07 29.8 0.0 1.2e-06 29.0 0.0 1.4 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|257386217|ref|YP_003175990.1| - 6.3e-06 26.2 0.2 1.7e-05 24.8 0.2 1.8 1 0 0 1 1 1 1 HAD-hyrolase-like HAD_2 PF13419.6 gi|257386217|ref|YP_003175990.1| - 0.0027 17.8 0.0 0.0029 17.7 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Aldo_ket_red PF00248.21 gi|257386218|ref|YP_003175991.1| - 2.5e-55 187.7 0.0 2.9e-55 187.6 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family Zn-ribbon_8 PF09723.10 gi|257386219|ref|YP_003175992.1| - 0.0034 17.5 2.7 0.01 15.9 2.7 1.7 1 1 0 1 1 1 1 Zinc ribbon domain DZR PF12773.7 gi|257386219|ref|YP_003175992.1| - 0.0037 17.2 0.7 0.0042 17.1 0.7 1.1 1 0 0 1 1 1 1 Double zinc ribbon HypA PF01155.19 gi|257386219|ref|YP_003175992.1| - 0.0039 17.2 0.3 0.0039 17.2 0.3 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-FPG_IleRS PF06827.14 gi|257386219|ref|YP_003175992.1| - 0.008 16.0 1.0 2 8.4 0.0 2.2 2 0 0 2 2 2 2 Zinc finger found in FPG and IleRS TackOD1 PF18551.1 gi|257386219|ref|YP_003175992.1| - 0.013 15.2 0.0 0.013 15.2 0.0 1.0 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 Ribosomal_L37e PF01907.19 gi|257386219|ref|YP_003175992.1| - 0.016 15.3 0.6 0.018 15.2 0.6 1.2 1 0 0 1 1 1 0 Ribosomal protein L37e zinc_ribbon_15 PF17032.5 gi|257386219|ref|YP_003175992.1| - 0.027 15.2 0.4 0.028 15.2 0.4 1.1 1 0 0 1 1 1 0 zinc-ribbon family zinc_ribbon_6 PF14599.6 gi|257386219|ref|YP_003175992.1| - 0.053 13.5 1.7 0.069 13.2 1.7 1.2 1 0 0 1 1 1 0 Zinc-ribbon zf-H2C2_2 PF13465.6 gi|257386219|ref|YP_003175992.1| - 0.15 12.5 2.0 3.7 8.1 0.0 2.2 1 1 1 2 2 2 0 Zinc-finger double domain Peptidase_S9 PF00326.21 gi|257386220|ref|YP_003175993.1| - 7.4e-47 159.6 0.0 1.1e-46 159.1 0.0 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family Peptidase_S15 PF02129.18 gi|257386220|ref|YP_003175993.1| - 5.2e-06 26.3 0.2 0.012 15.2 1.0 2.3 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) Hydrolase_4 PF12146.8 gi|257386220|ref|YP_003175993.1| - 0.0007 18.9 0.1 0.95 8.7 0.0 2.2 2 0 0 2 2 2 2 Serine aminopeptidase, S33 DLH PF01738.18 gi|257386220|ref|YP_003175993.1| - 0.012 15.1 0.0 0.028 14.0 0.0 1.6 1 1 0 1 1 1 0 Dienelactone hydrolase family AXE1 PF05448.12 gi|257386220|ref|YP_003175993.1| - 0.018 13.8 0.0 0.18 10.4 0.0 2.1 2 0 0 2 2 2 0 Acetyl xylan esterase (AXE1) Pectate_lyase22 PF14583.6 gi|257386220|ref|YP_003175993.1| - 0.026 13.2 0.1 0.098 11.3 0.0 1.9 2 1 0 2 2 2 0 Oligogalacturonate lyase Kelch_4 PF13418.6 gi|257386220|ref|YP_003175993.1| - 0.11 12.5 0.2 2.4 8.2 0.0 3.2 4 0 0 4 4 4 0 Galactose oxidase, central domain DPPIV_N PF00930.21 gi|257386220|ref|YP_003175993.1| - 0.12 11.1 0.0 13 4.4 0.0 2.6 1 1 1 2 2 2 0 Dipeptidyl peptidase IV (DPP IV) N-terminal region Peptidase_S28 PF05577.12 gi|257386220|ref|YP_003175993.1| - 0.13 11.0 0.0 0.19 10.5 0.0 1.1 1 0 0 1 1 1 0 Serine carboxypeptidase S28 Glycos_transf_2 PF00535.26 gi|257386221|ref|YP_003175994.1| - 1.7e-17 63.7 0.4 4.1e-17 62.5 0.5 1.5 1 1 1 2 2 2 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|257386221|ref|YP_003175994.1| - 1.9e-14 54.1 2.1 7.3e-10 39.1 0.8 2.1 1 1 1 2 2 2 2 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|257386221|ref|YP_003175994.1| - 4e-06 26.9 3.6 4.6e-06 26.7 2.9 1.4 1 1 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_2 PF10111.9 gi|257386221|ref|YP_003175994.1| - 7.4e-06 25.6 0.0 0.00039 20.0 0.0 2.1 2 0 0 2 2 2 1 Glycosyltransferase like family 2 NTP_transf_3 PF12804.7 gi|257386221|ref|YP_003175994.1| - 0.0011 19.3 4.2 0.0017 18.7 4.2 1.5 1 1 0 1 1 1 1 MobA-like NTP transferase domain Glyco_transf_7C PF02709.14 gi|257386221|ref|YP_003175994.1| - 0.011 15.4 0.0 0.02 14.6 0.0 1.3 1 0 0 1 1 1 0 N-terminal domain of galactosyltransferase Glyco_transf_21 PF13506.6 gi|257386221|ref|YP_003175994.1| - 0.038 13.5 0.0 0.16 11.5 0.0 1.9 2 0 0 2 2 2 0 Glycosyl transferase family 21 DUF4013 PF13197.6 gi|257386223|ref|YP_003175996.1| - 0.012 15.4 44.5 0.12 12.2 8.6 3.1 1 1 2 3 3 3 0 Protein of unknown function (DUF4013) BACK PF07707.15 gi|257386224|ref|YP_003175997.1| - 0.0086 16.2 0.0 0.012 15.6 0.0 1.2 1 0 0 1 1 1 1 BTB And C-terminal Kelch DUF3800 PF12686.7 gi|257386225|ref|YP_003175998.1| - 0.00048 20.7 0.0 0.00054 20.6 0.0 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF3800) zinc_ribbon_9 PF14369.6 gi|257386226|ref|YP_003175999.1| - 0.18 12.1 0.1 0.18 12.1 0.1 1.8 2 0 0 2 2 2 0 zinc-ribbon Phage_int_SAM_1 PF02899.17 gi|257386227|ref|YP_003176000.1| - 3.5e-05 24.0 0.0 8.9e-05 22.7 0.0 1.6 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_integrase PF00589.22 gi|257386227|ref|YP_003176000.1| - 4.1e-05 23.4 0.0 7.3e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_4 PF13495.6 gi|257386227|ref|YP_003176000.1| - 0.13 12.7 0.0 5.3 7.6 0.0 2.3 1 1 1 2 2 2 0 Phage integrase, N-terminal SAM-like domain Tuberculin PF12198.8 gi|257386228|ref|YP_003176001.1| - 0.17 12.0 0.0 0.69 10.1 0.0 1.9 2 0 0 2 2 2 0 Theoretical tuberculin protein Rio2_N PF09202.11 gi|257386229|ref|YP_003176002.1| - 0.016 15.4 0.0 0.026 14.7 0.0 1.3 1 1 0 1 1 1 0 Rio2, N-terminal Ribosomal_S19e PF01090.19 gi|257386229|ref|YP_003176002.1| - 0.02 14.6 0.0 0.022 14.5 0.0 1.1 1 0 0 1 1 1 0 Ribosomal protein S19e Tfb2 PF03849.14 gi|257386229|ref|YP_003176002.1| - 0.066 12.2 0.0 0.066 12.2 0.0 1.1 1 0 0 1 1 1 0 Transcription factor Tfb2 HTH_45 PF14947.6 gi|257386229|ref|YP_003176002.1| - 0.068 13.2 0.0 0.078 13.0 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_12 PF08461.10 gi|257386229|ref|YP_003176002.1| - 0.09 12.7 0.3 0.11 12.5 0.3 1.3 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_IclR PF09339.10 gi|257386229|ref|YP_003176002.1| - 0.12 12.2 0.0 0.19 11.6 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HicA_toxin PF07927.12 gi|257386232|ref|YP_003176005.1| - 1.6e-15 56.9 0.2 1.8e-15 56.7 0.2 1.1 1 0 0 1 1 1 1 HicA toxin of bacterial toxin-antitoxin, DUF5419 PF17441.2 gi|257386233|ref|YP_003176006.1| - 0.15 12.2 0.4 1.4 9.1 0.0 2.3 2 0 0 2 2 2 0 Family of unknown function (DUF5419) DZR PF12773.7 gi|257386238|ref|YP_003176011.1| - 1.5e-06 28.1 10.1 4.6e-06 26.5 10.1 1.8 1 1 0 1 1 1 1 Double zinc ribbon zinc_ribbon_15 PF17032.5 gi|257386238|ref|YP_003176011.1| - 5.2e-06 27.1 7.1 0.00023 21.9 0.7 2.2 2 0 0 2 2 2 2 zinc-ribbon family zf-ribbon_3 PF13248.6 gi|257386238|ref|YP_003176011.1| - 2.3e-05 23.6 14.4 0.0051 16.2 5.9 2.7 2 1 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|257386238|ref|YP_003176011.1| - 6.6e-05 22.5 16.0 0.034 13.9 1.7 2.7 2 1 0 2 2 2 2 zinc-ribbon domain RHH_1 PF01402.21 gi|257386238|ref|YP_003176011.1| - 0.00041 20.2 6.6 0.0019 18.1 3.0 3.1 2 1 0 2 2 2 1 Ribbon-helix-helix protein, copG family zf-NADH-PPase PF09297.11 gi|257386238|ref|YP_003176011.1| - 0.016 14.9 9.6 1.5 8.5 0.4 3.5 3 0 0 3 3 3 0 NADH pyrophosphatase zinc ribbon domain VapB_antitoxin PF09957.9 gi|257386238|ref|YP_003176011.1| - 0.025 14.5 0.3 0.11 12.5 0.0 2.0 2 0 0 2 2 2 0 Bacterial antitoxin of type II TA system, VapB zf_UBZ PF18439.1 gi|257386238|ref|YP_003176011.1| - 0.026 14.1 2.7 8.5 6.1 0.0 3.3 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger PolC_DP2 PF03833.13 gi|257386238|ref|YP_003176011.1| - 0.054 11.4 3.4 0.069 11.0 3.4 1.1 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 Zn-ribbon_8 PF09723.10 gi|257386238|ref|YP_003176011.1| - 0.17 12.1 9.3 0.93 9.7 3.0 3.2 2 1 1 3 3 3 0 Zinc ribbon domain Nudix_N_2 PF14803.6 gi|257386238|ref|YP_003176011.1| - 0.19 11.7 13.4 2.8 7.9 2.2 3.8 3 1 0 3 3 3 0 Nudix N-terminal zf-C3HC4_3 PF13920.6 gi|257386238|ref|YP_003176011.1| - 0.21 11.5 6.0 4.1 7.3 6.1 2.1 1 1 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zinc-ribbons_6 PF07191.12 gi|257386238|ref|YP_003176011.1| - 0.29 11.1 8.0 0.38 10.8 4.2 2.2 1 1 1 2 2 2 0 zinc-ribbons Cys_rich_KTR PF14205.6 gi|257386238|ref|YP_003176011.1| - 0.3 10.9 3.6 3.7 7.4 3.5 2.2 1 1 0 1 1 1 0 Cysteine-rich KTR HypA PF01155.19 gi|257386238|ref|YP_003176011.1| - 0.48 10.5 9.4 0.63 10.1 2.3 2.3 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA NOB1_Zn_bind PF08772.11 gi|257386238|ref|YP_003176011.1| - 0.63 10.2 12.2 4.2 7.6 5.4 2.8 1 1 2 3 3 3 0 Nin one binding (NOB1) Zn-ribbon like HscB_4_cys PF18256.1 gi|257386238|ref|YP_003176011.1| - 1.6 8.6 13.8 0.2 11.5 2.4 2.9 1 1 0 2 2 2 0 Co-chaperone HscB tetracysteine metal binding motif Prok-RING_1 PF14446.6 gi|257386238|ref|YP_003176011.1| - 3.3 7.7 10.5 4.5 7.3 5.4 2.4 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 Zn_ribbon_SprT PF17283.2 gi|257386238|ref|YP_003176011.1| - 3.4 7.7 13.9 1.3e+02 2.6 0.2 3.7 2 1 0 2 2 2 0 SprT-like zinc ribbon domain Ribosomal_L32p PF01783.23 gi|257386238|ref|YP_003176011.1| - 3.4 8.0 10.7 24 5.3 8.1 2.9 2 1 0 2 2 2 0 Ribosomal L32p protein family DNA_RNApol_7kD PF03604.13 gi|257386238|ref|YP_003176011.1| - 3.6 7.3 10.7 0.2 11.4 2.3 2.6 2 1 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit Zn_Tnp_IS91 PF14319.6 gi|257386238|ref|YP_003176011.1| - 5.1 7.2 8.4 17 5.5 8.5 1.8 1 1 0 1 1 1 0 Transposase zinc-binding domain Zn_Tnp_IS1595 PF12760.7 gi|257386238|ref|YP_003176011.1| - 5.2 7.1 9.7 3 7.9 0.8 3.0 2 1 1 3 3 3 0 Transposase zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|257386238|ref|YP_003176011.1| - 6.6 6.7 11.5 0.57 10.1 3.5 2.4 1 1 1 2 2 2 0 Putative transposase DNA-binding domain Ogr_Delta PF04606.12 gi|257386238|ref|YP_003176011.1| - 9.4 6.3 7.6 3.2 7.8 0.2 3.1 3 0 0 3 3 3 0 Ogr/Delta-like zinc finger RHH_1 PF01402.21 gi|257386239|ref|YP_003176012.1| - 2.7e-08 33.4 0.4 3.9e-08 32.9 0.4 1.3 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_8 PF17723.1 gi|257386239|ref|YP_003176012.1| - 2.1e-05 24.7 0.0 2.2e-05 24.6 0.0 1.0 1 0 0 1 1 1 1 Ribbon-Helix-Helix transcriptional regulator family PSK_trans_fac PF07704.11 gi|257386239|ref|YP_003176012.1| - 0.039 14.7 1.1 0.058 14.2 1.1 1.3 1 1 0 1 1 1 0 Rv0623-like transcription factor VapB_antitoxin PF09957.9 gi|257386239|ref|YP_003176012.1| - 0.07 13.1 0.3 0.1 12.6 0.3 1.4 1 1 0 1 1 1 0 Bacterial antitoxin of type II TA system, VapB Tubulin PF00091.25 gi|257386240|ref|YP_003176013.1| - 1e-37 130.3 3.0 2.9e-37 128.8 3.0 1.8 1 1 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.8 gi|257386240|ref|YP_003176013.1| - 9.1e-36 122.1 0.7 9.1e-36 122.1 0.7 2.9 2 1 1 3 3 3 1 FtsZ family, C-terminal domain ThiF PF00899.21 gi|257386240|ref|YP_003176013.1| - 0.071 12.5 0.0 0.13 11.6 0.0 1.4 1 0 0 1 1 1 0 ThiF family ZT_dimer PF16916.5 gi|257386240|ref|YP_003176013.1| - 0.14 12.3 0.0 0.41 10.8 0.0 1.8 1 0 0 1 1 1 0 Dimerisation domain of Zinc Transporter Trp_dioxygenase PF03301.13 gi|257386243|ref|YP_003176016.1| - 0.07 12.5 0.0 0.094 12.0 0.0 1.2 1 0 0 1 1 1 0 Tryptophan 2,3-dioxygenase ATPase PF06745.13 gi|257386243|ref|YP_003176016.1| - 0.1 11.9 0.0 0.13 11.6 0.0 1.1 1 0 0 1 1 1 0 KaiC HalX PF08663.10 gi|257386244|ref|YP_003176017.1| - 4.4e-10 39.7 5.3 4.4e-10 39.7 2.5 2.4 1 1 1 2 2 2 1 HalX domain Response_reg PF00072.24 gi|257386244|ref|YP_003176017.1| - 0.0065 16.6 0.2 1.1 9.4 0.4 2.3 2 0 0 2 2 2 2 Response regulator receiver domain DBD_HTH PF18430.1 gi|257386244|ref|YP_003176017.1| - 0.024 14.4 1.7 0.2 11.5 0.3 2.3 2 0 0 2 2 2 0 Putative DNA-binding domain CLZ PF16526.5 gi|257386244|ref|YP_003176017.1| - 0.082 13.3 0.3 1.3 9.4 0.1 2.4 1 1 1 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels VCBS PF13517.6 gi|257386245|ref|YP_003176018.1| - 0.049 14.2 0.1 0.41 11.3 0.0 2.1 1 1 1 2 2 2 0 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella ATP_bind_3 PF01171.20 gi|257386246|ref|YP_003176019.1| - 5.7e-13 49.0 0.0 7.8e-13 48.6 0.0 1.3 1 0 0 1 1 1 1 PP-loop family NAD_synthase PF02540.17 gi|257386246|ref|YP_003176019.1| - 8e-05 21.9 0.0 0.00013 21.2 0.0 1.2 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.16 gi|257386246|ref|YP_003176019.1| - 0.00027 19.9 0.0 0.00035 19.5 0.0 1.1 1 0 0 1 1 1 1 tRNA methyl transferase PAPS_reduct PF01507.19 gi|257386246|ref|YP_003176019.1| - 0.00068 19.7 0.0 0.001 19.1 0.0 1.2 1 0 0 1 1 1 1 Phosphoadenosine phosphosulfate reductase family zn-ribbon_14 PF16503.5 gi|257386246|ref|YP_003176019.1| - 0.0025 17.3 1.0 0.0025 17.3 1.0 3.2 4 0 0 4 4 4 1 Zinc-ribbon Lar_restr_allev PF14354.6 gi|257386246|ref|YP_003176019.1| - 0.041 14.3 5.8 2.2 8.7 0.8 3.4 3 0 0 3 3 3 0 Restriction alleviation protein Lar Rhodanese_C PF12368.8 gi|257386246|ref|YP_003176019.1| - 1.1 9.7 9.1 2.2 8.7 0.2 3.3 3 0 0 3 3 3 0 Rhodanase C-terminal zf-ribbon_3 PF13248.6 gi|257386246|ref|YP_003176019.1| - 3.4 7.2 15.1 3.8 7.0 0.2 3.7 3 0 0 3 3 3 0 zinc-ribbon domain Abhydrolase_6 PF12697.7 gi|257386247|ref|YP_003176020.1| - 0.0012 19.5 8.6 0.0018 18.9 8.6 1.3 1 0 0 1 1 1 1 Alpha/beta hydrolase family Ser_hydrolase PF06821.13 gi|257386247|ref|YP_003176020.1| - 0.002 18.0 0.3 0.0028 17.5 0.3 1.3 1 0 0 1 1 1 1 Serine hydrolase DUF2332 PF10094.9 gi|257386248|ref|YP_003176021.1| - 3.9e-112 375.0 4.9 4.4e-112 374.9 4.9 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2332) dCache_1 PF02743.18 gi|257386249|ref|YP_003176022.1| - 2.8e-15 56.8 0.0 4.8e-15 56.0 0.0 1.4 1 0 0 1 1 1 1 Cache domain HATPase_c PF02518.26 gi|257386249|ref|YP_003176022.1| - 4.4e-15 56.2 0.0 1.1e-14 54.9 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|257386249|ref|YP_003176022.1| - 2.8e-08 33.8 0.1 5.9e-08 32.7 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAP_PilO PF06864.12 gi|257386249|ref|YP_003176022.1| - 0.015 14.1 0.9 0.038 12.8 0.0 1.9 2 0 0 2 2 2 0 Pilin accessory protein (PilO) HisKA_4TM PF16926.5 gi|257386249|ref|YP_003176022.1| - 0.023 14.3 1.9 0.065 12.8 0.2 2.6 2 1 1 3 3 3 0 Archaeal 4TM region of histidine kinase AI-2E_transport PF01594.16 gi|257386249|ref|YP_003176022.1| - 0.082 12.0 0.3 0.12 11.5 0.3 1.3 1 0 0 1 1 1 0 AI-2E family transporter HisKA PF00512.25 gi|257386249|ref|YP_003176022.1| - 0.12 12.4 1.0 0.42 10.7 1.0 1.9 1 0 0 1 1 1 0 His Kinase A (phospho-acceptor) domain CopD PF05425.13 gi|257386251|ref|YP_003176024.1| - 8.9e-09 35.7 13.0 8.9e-09 35.7 13.0 2.1 2 0 0 2 2 2 1 Copper resistance protein D DUF2269 PF10027.9 gi|257386251|ref|YP_003176024.1| - 0.32 11.0 12.2 1.1 9.3 12.2 1.8 1 1 0 1 1 1 0 Predicted integral membrane protein (DUF2269) C_GCAxxG_C_C PF09719.10 gi|257386252|ref|YP_003176025.1| - 0.53 10.6 2.1 0.6 10.4 1.2 1.5 1 1 0 1 1 1 0 Putative redox-active protein (C_GCAxxG_C_C) Methyltransf_11 PF08241.12 gi|257386253|ref|YP_003176026.1| - 4.3e-15 56.1 1.0 4.4e-14 52.9 0.1 2.5 2 1 1 3 3 3 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|257386253|ref|YP_003176026.1| - 4.3e-13 49.8 1.1 1.6e-11 44.7 0.1 3.0 2 2 1 3 3 3 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|257386253|ref|YP_003176026.1| - 1.3e-11 44.5 0.3 1e-10 41.6 0.1 2.2 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|257386253|ref|YP_003176026.1| - 2.9e-10 40.2 0.0 4.2e-10 39.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|257386253|ref|YP_003176026.1| - 1.4e-06 28.0 0.0 2.4e-06 27.3 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltransf_12 PF08242.12 gi|257386253|ref|YP_003176026.1| - 9.4e-06 26.3 0.2 3.7e-05 24.4 0.1 2.1 2 1 0 2 2 1 1 Methyltransferase domain PCMT PF01135.19 gi|257386253|ref|YP_003176026.1| - 1.9e-05 24.5 0.0 3.2e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Ubie_methyltran PF01209.18 gi|257386253|ref|YP_003176026.1| - 6.2e-05 22.4 0.0 0.00034 20.0 0.0 2.0 1 1 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_8 PF05148.15 gi|257386253|ref|YP_003176026.1| - 9.3e-05 22.4 0.2 0.00014 21.8 0.2 1.2 1 0 0 1 1 1 1 Hypothetical methyltransferase MTS PF05175.14 gi|257386253|ref|YP_003176026.1| - 0.00024 20.7 0.0 0.00052 19.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_32 PF13679.6 gi|257386253|ref|YP_003176026.1| - 0.00093 19.2 0.0 0.0016 18.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|257386253|ref|YP_003176026.1| - 0.0064 15.9 0.2 0.0093 15.4 0.2 1.3 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) FtsJ PF01728.19 gi|257386253|ref|YP_003176026.1| - 0.021 14.9 0.0 0.029 14.5 0.0 1.3 1 0 0 1 1 1 0 FtsJ-like methyltransferase CMAS PF02353.20 gi|257386253|ref|YP_003176026.1| - 0.024 13.9 0.0 0.038 13.3 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Methyltransf_9 PF08003.11 gi|257386253|ref|YP_003176026.1| - 0.13 11.1 0.0 0.21 10.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) Methyltransf_4 PF02390.17 gi|257386253|ref|YP_003176026.1| - 0.16 11.4 0.0 0.29 10.6 0.0 1.4 1 0 0 1 1 1 0 Putative methyltransferase RrnaAD PF00398.20 gi|257386253|ref|YP_003176026.1| - 0.18 10.9 0.0 0.25 10.3 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Regulator_TrmB PF11495.8 gi|257386254|ref|YP_003176027.1| - 7.8e-40 136.5 0.0 9.2e-40 136.3 0.0 1.0 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB HATPase_c PF02518.26 gi|257386255|ref|YP_003176028.1| - 2.8e-16 60.0 0.0 5.2e-16 59.1 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|257386255|ref|YP_003176028.1| - 1.5e-10 41.0 0.2 1.5e-10 41.0 0.2 3.1 4 0 0 4 4 4 1 His Kinase A (phospho-acceptor) domain GAF_2 PF13185.6 gi|257386255|ref|YP_003176028.1| - 2.8e-06 27.7 0.1 9.3e-06 26.0 0.1 2.0 1 1 0 1 1 1 1 GAF domain OKR_DC_1_N PF03709.15 gi|257386255|ref|YP_003176028.1| - 8.6e-05 22.8 0.0 0.00031 21.0 0.0 2.1 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, N-terminal domain Response_reg PF00072.24 gi|257386255|ref|YP_003176028.1| - 0.00019 21.6 0.0 0.00073 19.7 0.0 2.0 2 0 0 2 2 2 1 Response regulator receiver domain SPOB_a PF14689.6 gi|257386255|ref|YP_003176028.1| - 0.011 15.4 0.3 0.029 14.1 0.0 1.8 2 0 0 2 2 2 0 Sensor_kinase_SpoOB-type, alpha-helical domain HATPase_c_5 PF14501.6 gi|257386255|ref|YP_003176028.1| - 0.064 13.2 0.0 0.23 11.4 0.0 1.9 1 1 0 1 1 1 0 GHKL domain AP_endonuc_2 PF01261.24 gi|257386256|ref|YP_003176029.1| - 8.9e-29 100.4 4.5 9.9e-29 100.3 1.2 1.9 2 0 0 2 2 2 2 Xylose isomerase-like TIM barrel DUF1771 PF08590.10 gi|257386257|ref|YP_003176030.1| - 0.063 13.7 0.1 0.12 12.8 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF1771) Skp1 PF01466.19 gi|257386257|ref|YP_003176030.1| - 0.12 12.5 0.1 0.24 11.6 0.1 1.5 1 0 0 1 1 1 0 Skp1 family, dimerisation domain BPL_LplA_LipB PF03099.19 gi|257386258|ref|YP_003176031.1| - 5.8e-11 42.4 0.0 9.9e-11 41.7 0.0 1.3 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family Complex1_49kDa PF00346.19 gi|257386259|ref|YP_003176032.1| - 4.9e-84 281.6 0.0 2.1e-82 276.3 0.0 2.2 1 1 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.19 gi|257386259|ref|YP_003176032.1| - 3.4e-34 118.1 0.0 7.3e-34 117.0 0.0 1.6 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit PMSR PF01625.21 gi|257386261|ref|YP_003176034.1| - 2.8e-66 222.4 1.8 3.3e-66 222.2 1.8 1.0 1 0 0 1 1 1 1 Peptide methionine sulfoxide reductase DUF4298 PF14131.6 gi|257386261|ref|YP_003176034.1| - 0.31 11.0 1.5 0.69 9.9 0.3 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4298) 4HBT_2 PF13279.6 gi|257386262|ref|YP_003176035.1| - 2.7e-19 69.8 0.0 3.4e-19 69.5 0.0 1.0 1 0 0 1 1 1 1 Thioesterase-like superfamily 4HBT PF03061.22 gi|257386262|ref|YP_003176035.1| - 4.7e-18 65.3 0.2 6.6e-18 64.8 0.2 1.2 1 0 0 1 1 1 1 Thioesterase superfamily Acyl-ACP_TE PF01643.17 gi|257386262|ref|YP_003176035.1| - 3.8e-10 39.5 0.1 3e-05 23.5 0.4 2.0 1 1 0 2 2 2 2 Acyl-ACP thioesterase DUF3016 PF11454.8 gi|257386262|ref|YP_003176035.1| - 0.013 15.3 0.0 0.019 14.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3016) RNA_POL_M_15KD PF02150.16 gi|257386263|ref|YP_003176036.1| - 0.081 12.8 0.6 1.5 8.8 0.1 2.2 2 0 0 2 2 2 0 RNA polymerases M/15 Kd subunit SR1P PF13790.6 gi|257386263|ref|YP_003176036.1| - 0.1 12.7 0.8 2.1 8.5 0.1 2.3 2 0 0 2 2 2 0 SR1 protein PRP4 PF08799.11 gi|257386264|ref|YP_003176037.1| - 0.53 9.9 4.5 0.99 9.0 4.5 1.5 1 0 0 1 1 1 0 pre-mRNA processing factor 4 (PRP4) like Usp PF00582.26 gi|257386265|ref|YP_003176038.1| - 6.9e-10 39.6 0.9 9.4e-10 39.2 0.9 1.2 1 0 0 1 1 1 1 Universal stress protein family AA_permease_2 PF13520.6 gi|257386266|ref|YP_003176039.1| - 6.6e-44 150.4 41.0 9.1e-44 149.9 41.0 1.2 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|257386266|ref|YP_003176039.1| - 2.3e-33 115.5 42.4 1.3e-32 113.0 42.4 1.9 1 1 0 1 1 1 1 Amino acid permease Usp PF00582.26 gi|257386266|ref|YP_003176039.1| - 2.9e-18 66.7 6.0 9.6e-12 45.6 0.2 3.3 2 1 0 2 2 2 2 Universal stress protein family Trp_Tyr_perm PF03222.13 gi|257386266|ref|YP_003176039.1| - 2.9e-07 29.9 22.5 5.7e-07 28.9 22.5 1.4 1 0 0 1 1 1 1 Tryptophan/tyrosine permease family Spore_permease PF03845.13 gi|257386266|ref|YP_003176039.1| - 0.0012 17.8 10.7 0.0012 17.8 10.7 2.0 2 0 0 2 2 2 1 Spore germination protein RIO1 PF01163.22 gi|257386267|ref|YP_003176040.1| - 2.1e-48 164.4 0.1 3e-48 163.9 0.1 1.1 1 0 0 1 1 1 1 RIO1 family Rio2_N PF09202.11 gi|257386267|ref|YP_003176040.1| - 3.5e-27 94.4 0.0 6.5e-27 93.6 0.0 1.5 1 0 0 1 1 1 1 Rio2, N-terminal ABC_transp_aux PF09822.9 gi|257386268|ref|YP_003176041.1| - 5.3e-05 22.8 0.0 7.9e-05 22.3 0.0 1.2 1 0 0 1 1 1 1 ABC-type uncharacterized transport system DUF4350 PF14258.6 gi|257386268|ref|YP_003176041.1| - 0.001 19.5 0.4 0.0032 17.9 0.1 2.0 2 0 0 2 2 2 1 Domain of unknown function (DUF4350) Peptidase_S49 PF01343.18 gi|257386269|ref|YP_003176042.1| - 8.4e-21 74.5 0.4 2.2e-11 43.9 0.0 2.2 2 0 0 2 2 2 2 Peptidase family S49 CLP_protease PF00574.23 gi|257386269|ref|YP_003176042.1| - 1.5e-09 38.0 0.0 2.1e-08 34.3 0.0 2.1 1 1 0 1 1 1 1 Clp protease ECH_1 PF00378.20 gi|257386269|ref|YP_003176042.1| - 0.012 15.0 0.0 1.4 8.2 0.0 2.4 1 1 1 2 2 2 0 Enoyl-CoA hydratase/isomerase DHquinase_I PF01487.15 gi|257386269|ref|YP_003176042.1| - 0.021 15.1 0.0 0.025 14.8 0.0 1.2 1 0 0 1 1 1 0 Type I 3-dehydroquinase SDH_sah PF01972.16 gi|257386269|ref|YP_003176042.1| - 0.11 11.5 0.1 0.15 11.0 0.1 1.2 1 0 0 1 1 1 0 Serine dehydrogenase proteinase Peptidase_S49_N PF08496.10 gi|257386269|ref|YP_003176042.1| - 0.7 9.9 2.1 1 9.4 0.1 2.0 1 1 0 2 2 2 0 Peptidase family S49 N-terminal 2-Hacid_dh_C PF02826.19 gi|257386270|ref|YP_003176043.1| - 4.2e-56 189.1 0.0 1.1e-55 187.7 0.0 1.7 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|257386270|ref|YP_003176043.1| - 3.6e-29 101.1 0.1 4.1e-29 100.9 0.1 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain UDPG_MGDP_dh_C PF03720.15 gi|257386270|ref|YP_003176043.1| - 0.041 14.3 0.1 0.15 12.5 0.0 2.0 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Peptidase_M91 PF14891.6 gi|257386271|ref|YP_003176044.1| - 0.00098 19.5 0.1 0.0016 18.8 0.1 1.4 1 0 0 1 1 1 1 Effector protein Peptidase_M78 PF06114.13 gi|257386271|ref|YP_003176044.1| - 0.019 14.9 0.0 0.038 13.9 0.0 1.4 1 0 0 1 1 1 0 IrrE N-terminal-like domain DUF4157 PF13699.6 gi|257386272|ref|YP_003176045.1| - 0.019 15.2 1.3 0.03 14.6 0.1 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4157) Peptidase_M76 PF09768.9 gi|257386272|ref|YP_003176045.1| - 0.023 14.5 0.0 0.035 13.9 0.0 1.2 1 0 0 1 1 1 0 Peptidase M76 family DUF2268 PF10026.9 gi|257386272|ref|YP_003176045.1| - 0.049 13.2 0.0 0.082 12.5 0.0 1.3 1 0 0 1 1 1 0 Predicted Zn-dependent protease (DUF2268) Pilus_CpaD PF09476.10 gi|257386272|ref|YP_003176045.1| - 0.13 12.0 1.2 0.78 9.4 0.1 2.5 3 1 0 3 3 3 0 Pilus biogenesis CpaD protein (pilus_cpaD) MLTD_N PF06474.12 gi|257386272|ref|YP_003176045.1| - 0.33 11.2 2.3 0.63 10.3 2.3 1.5 1 0 0 1 1 1 0 MltD lipid attachment motif Isochorismatase PF00857.20 gi|257386273|ref|YP_003176046.1| - 2.7e-51 174.2 0.1 3e-51 174.1 0.1 1.0 1 0 0 1 1 1 1 Isochorismatase family Peptidase_M23 PF01551.22 gi|257386274|ref|YP_003176047.1| - 0.00024 21.3 0.0 0.00079 19.6 0.0 1.8 2 0 0 2 2 2 1 Peptidase family M23 DUF2437 PF10370.9 gi|257386274|ref|YP_003176047.1| - 0.029 15.3 1.6 0.089 13.7 0.2 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF2437) BPD_transp_1 PF00528.22 gi|257386275|ref|YP_003176048.1| - 9.1e-13 48.3 21.9 6.2e-12 45.6 18.8 2.7 2 1 1 3 3 3 3 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|257386276|ref|YP_003176049.1| - 1.1e-15 57.9 15.7 1.1e-15 57.9 15.7 2.1 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_8 PF13416.6 gi|257386277|ref|YP_003176050.1| - 1.5e-36 126.7 1.0 1.9e-36 126.3 1.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|257386277|ref|YP_003176050.1| - 2.2e-20 73.8 3.4 3.4e-20 73.2 3.4 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.9 gi|257386277|ref|YP_003176050.1| - 0.0057 16.5 0.2 0.0057 16.5 0.2 2.5 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence ABC_tran PF00005.27 gi|257386278|ref|YP_003176051.1| - 2.8e-34 118.5 0.0 4.5e-34 117.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 gi|257386278|ref|YP_003176051.1| - 5.8e-11 42.4 0.4 2e-10 40.7 0.1 2.1 2 0 0 2 2 1 1 TOBE domain OB_MalK PF17912.1 gi|257386278|ref|YP_003176051.1| - 1.2e-07 32.5 0.0 4.8e-07 30.5 0.0 2.1 1 0 0 1 1 1 1 MalK OB fold domain AAA_21 PF13304.6 gi|257386278|ref|YP_003176051.1| - 1.4e-06 28.4 0.0 0.017 15.0 0.0 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|257386278|ref|YP_003176051.1| - 0.00017 21.1 0.5 0.0014 18.1 0.5 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain TOBE PF03459.17 gi|257386278|ref|YP_003176051.1| - 0.00034 20.8 0.0 0.00073 19.8 0.0 1.6 1 0 0 1 1 1 1 TOBE domain Rad17 PF03215.15 gi|257386278|ref|YP_003176051.1| - 0.0011 18.9 0.0 0.0016 18.4 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_16 PF13191.6 gi|257386278|ref|YP_003176051.1| - 0.0012 19.3 0.1 0.002 18.5 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|257386278|ref|YP_003176051.1| - 0.0013 19.0 0.3 0.0033 17.7 0.2 1.8 1 1 1 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|257386278|ref|YP_003176051.1| - 0.01 16.4 0.0 0.019 15.5 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|257386278|ref|YP_003176051.1| - 0.017 14.8 0.0 0.056 13.1 0.0 1.7 1 1 1 2 2 2 0 AAA ATPase domain AAA_14 PF13173.6 gi|257386278|ref|YP_003176051.1| - 0.018 15.1 0.0 0.048 13.7 0.0 1.7 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|257386278|ref|YP_003176051.1| - 0.019 14.9 0.0 0.043 13.7 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase CysA_C_terminal PF17850.1 gi|257386278|ref|YP_003176051.1| - 0.023 15.3 0.4 0.12 13.0 0.0 2.4 3 0 0 3 3 2 0 CysA C-terminal regulatory domain AAA PF00004.29 gi|257386278|ref|YP_003176051.1| - 0.025 15.0 0.0 0.1 13.0 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) Mg_chelatase PF01078.21 gi|257386278|ref|YP_003176051.1| - 0.035 13.5 0.0 0.066 12.6 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_25 PF13481.6 gi|257386278|ref|YP_003176051.1| - 0.043 13.4 0.1 0.14 11.8 0.0 2.0 2 1 0 2 2 2 0 AAA domain G-alpha PF00503.20 gi|257386278|ref|YP_003176051.1| - 0.057 12.6 0.0 0.072 12.2 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit MMR_HSR1 PF01926.23 gi|257386278|ref|YP_003176051.1| - 0.09 12.9 0.0 2.1 8.5 0.0 2.5 2 0 0 2 2 2 0 50S ribosome-binding GTPase Zeta_toxin PF06414.12 gi|257386278|ref|YP_003176051.1| - 0.094 12.0 0.0 0.17 11.2 0.0 1.3 1 0 0 1 1 1 0 Zeta toxin AAA_29 PF13555.6 gi|257386278|ref|YP_003176051.1| - 0.11 12.2 0.2 0.28 10.9 0.0 1.7 2 0 0 2 2 2 0 P-loop containing region of AAA domain AAA_28 PF13521.6 gi|257386278|ref|YP_003176051.1| - 0.12 12.6 0.0 0.3 11.3 0.0 1.7 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|257386278|ref|YP_003176051.1| - 0.15 12.2 0.5 0.27 11.4 0.5 1.7 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|257386278|ref|YP_003176051.1| - 0.16 11.7 0.1 0.4 10.4 0.0 1.6 2 0 0 2 2 2 0 AAA domain Cytidylate_kin PF02224.18 gi|257386278|ref|YP_003176051.1| - 0.21 11.3 1.1 4.4 7.0 1.2 2.5 1 1 0 1 1 1 0 Cytidylate kinase Regulator_TrmB PF11495.8 gi|257386279|ref|YP_003176052.1| - 2e-58 197.3 0.0 3e-58 196.8 0.0 1.2 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.19 gi|257386279|ref|YP_003176052.1| - 7.4e-15 54.6 0.1 1.3e-14 53.8 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|257386279|ref|YP_003176052.1| - 0.00078 19.3 0.0 0.002 18.0 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|257386279|ref|YP_003176052.1| - 0.0061 16.3 0.0 0.015 15.1 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.22 gi|257386279|ref|YP_003176052.1| - 0.015 15.2 0.0 0.033 14.1 0.0 1.6 1 0 0 1 1 1 0 MarR family Rrf2 PF02082.20 gi|257386279|ref|YP_003176052.1| - 0.022 15.1 0.0 0.054 13.8 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator HTH_24 PF13412.6 gi|257386279|ref|YP_003176052.1| - 0.023 14.3 0.0 0.048 13.2 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_29 PF13551.6 gi|257386279|ref|YP_003176052.1| - 0.027 14.5 0.0 0.094 12.8 0.0 1.9 1 1 1 2 2 2 0 Winged helix-turn helix Exonuc_VII_L PF02601.15 gi|257386279|ref|YP_003176052.1| - 0.037 13.6 0.1 0.048 13.2 0.1 1.2 1 0 0 1 1 1 0 Exonuclease VII, large subunit HTH_5 PF01022.20 gi|257386279|ref|YP_003176052.1| - 0.15 12.0 0.0 0.48 10.3 0.0 1.9 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|257386279|ref|YP_003176052.1| - 0.17 11.8 0.4 0.43 10.6 0.0 1.8 2 0 0 2 2 2 0 HTH domain Alpha-amylase PF00128.24 gi|257386280|ref|YP_003176053.1| - 7.1e-83 278.9 0.0 1e-82 278.4 0.0 1.2 1 0 0 1 1 1 1 Alpha amylase, catalytic domain Alpha-amylase_N PF02903.14 gi|257386280|ref|YP_003176053.1| - 3.3e-31 107.9 0.0 5.8e-31 107.1 0.0 1.4 1 0 0 1 1 1 1 Alpha amylase, N-terminal ig-like domain DUF3459 PF11941.8 gi|257386280|ref|YP_003176053.1| - 5.2e-07 29.9 0.0 1.5e-06 28.4 0.0 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF3459) Glyco_hydro_66 PF13199.6 gi|257386280|ref|YP_003176053.1| - 0.015 14.0 0.1 0.024 13.3 0.1 1.2 1 0 0 1 1 1 0 Glycosyl hydrolase family 66 Alpha-amylase PF00128.24 gi|257386281|ref|YP_003176054.1| - 4.5e-51 174.4 4.1 6.7e-51 173.8 4.1 1.2 1 0 0 1 1 1 1 Alpha amylase, catalytic domain CBM_20 PF00686.19 gi|257386281|ref|YP_003176054.1| - 7.7e-24 83.4 0.0 1.6e-23 82.5 0.0 1.5 1 0 0 1 1 1 1 Starch binding domain TIG PF01833.24 gi|257386281|ref|YP_003176054.1| - 1.2e-09 38.1 0.7 2.7e-09 37.0 0.7 1.7 1 0 0 1 1 1 1 IPT/TIG domain Alpha-amylase_C PF02806.18 gi|257386281|ref|YP_003176054.1| - 0.00019 21.8 0.0 0.00076 19.9 0.0 2.0 1 0 0 1 1 1 1 Alpha amylase, C-terminal all-beta domain BPL_LplA_LipB PF03099.19 gi|257386282|ref|YP_003176055.1| - 0.011 15.6 0.0 0.018 14.9 0.0 1.2 1 0 0 1 1 1 0 Biotin/lipoate A/B protein ligase family EccE PF11203.8 gi|257386282|ref|YP_003176055.1| - 3.4 8.1 9.4 4.1 7.8 4.9 2.9 1 1 0 2 2 2 0 Putative type VII ESX secretion system translocon, EccE Amidohydro_1 PF01979.20 gi|257386283|ref|YP_003176056.1| - 3e-22 79.4 0.0 7.2e-22 78.2 0.0 1.7 1 1 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|257386283|ref|YP_003176056.1| - 1.5e-12 47.8 5.7 3.8e-05 23.4 0.2 3.2 3 0 0 3 3 3 3 Amidohydrolase family Usp PF00582.26 gi|257386283|ref|YP_003176056.1| - 0.0035 17.8 0.5 0.0035 17.8 0.5 2.3 3 0 0 3 3 3 1 Universal stress protein family IncD PF17628.2 gi|257386284|ref|YP_003176057.1| - 0.0019 18.0 1.3 0.0019 18.0 1.3 1.5 2 0 0 2 2 2 1 Inclusion membrane protein D Dicer_N PF17895.1 gi|257386284|ref|YP_003176057.1| - 0.22 11.3 1.6 0.37 10.6 1.0 1.7 1 1 0 1 1 1 0 Giardia Dicer N-terminal domain Aph-1 PF06105.12 gi|257386285|ref|YP_003176058.1| - 0.035 13.5 0.0 0.047 13.1 0.0 1.2 1 0 0 1 1 1 0 Aph-1 protein BPD_transp_1 PF00528.22 gi|257386286|ref|YP_003176059.1| - 7.8e-33 113.8 7.9 7.8e-33 113.8 7.9 1.7 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|257386286|ref|YP_003176059.1| - 4.5e-05 23.3 2.9 9.8e-05 22.3 0.2 2.6 2 0 0 2 2 2 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.22 gi|257386287|ref|YP_003176060.1| - 5.7e-39 133.8 13.2 8.6e-39 133.2 13.2 1.3 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.22 gi|257386288|ref|YP_003176061.1| - 2.3e-77 260.5 0.4 3.3e-77 260.0 0.4 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.9 gi|257386288|ref|YP_003176061.1| - 9.9e-05 22.0 4.3 0.00024 20.8 4.3 1.7 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence ABC_tran PF00005.27 gi|257386289|ref|YP_003176062.1| - 3.3e-54 183.1 0.0 1e-30 107.1 0.0 3.2 3 0 0 3 3 3 3 ABC transporter oligo_HPY PF08352.12 gi|257386289|ref|YP_003176062.1| - 1.2e-37 128.2 0.1 1.8e-19 70.0 0.0 2.6 2 0 0 2 2 2 2 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|257386289|ref|YP_003176062.1| - 3.1e-10 40.4 1.4 2.6e-05 24.2 0.0 3.9 3 1 0 4 4 4 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|257386289|ref|YP_003176062.1| - 2.7e-07 31.1 0.1 0.0098 16.3 0.0 2.7 2 0 0 2 2 2 2 AAA ATPase domain AIG1 PF04548.16 gi|257386289|ref|YP_003176062.1| - 0.00024 20.5 1.2 0.4 10.0 0.2 3.2 3 0 0 3 3 3 1 AIG1 family AAA_22 PF13401.6 gi|257386289|ref|YP_003176062.1| - 0.00043 20.6 2.1 0.13 12.6 0.1 3.1 3 1 0 3 3 3 1 AAA domain AAA_29 PF13555.6 gi|257386289|ref|YP_003176062.1| - 0.00061 19.5 1.3 0.78 9.5 0.2 2.4 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_7 PF12775.7 gi|257386289|ref|YP_003176062.1| - 0.0039 16.7 0.0 1.8 8.0 0.0 2.3 2 0 0 2 2 2 2 P-loop containing dynein motor region AAA_5 PF07728.14 gi|257386289|ref|YP_003176062.1| - 0.026 14.5 0.7 1.3 9.0 0.0 2.7 3 0 0 3 3 2 0 AAA domain (dynein-related subfamily) AAA_25 PF13481.6 gi|257386289|ref|YP_003176062.1| - 0.065 12.8 3.6 6.5 6.3 0.3 4.4 4 2 0 4 4 4 0 AAA domain PRK PF00485.18 gi|257386289|ref|YP_003176062.1| - 0.082 12.6 0.0 1.4 8.6 0.0 2.2 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family DUF87 PF01935.17 gi|257386289|ref|YP_003176062.1| - 0.11 12.6 1.2 4.2 7.4 0.0 2.4 2 0 0 2 2 2 0 Helicase HerA, central domain RsgA_GTPase PF03193.16 gi|257386289|ref|YP_003176062.1| - 0.11 12.4 0.4 6.9 6.5 0.1 2.4 2 0 0 2 2 2 0 RsgA GTPase AAA_24 PF13479.6 gi|257386289|ref|YP_003176062.1| - 0.12 12.0 0.1 18 5.0 0.0 2.3 2 0 0 2 2 2 0 AAA domain ATP-synt_ab PF00006.25 gi|257386289|ref|YP_003176062.1| - 0.13 11.9 0.0 1.9 8.1 0.0 2.2 2 0 0 2 2 2 0 ATP synthase alpha/beta family, nucleotide-binding domain Zeta_toxin PF06414.12 gi|257386289|ref|YP_003176062.1| - 0.24 10.7 0.4 1.3 8.2 0.1 2.0 2 0 0 2 2 2 0 Zeta toxin RNA_helicase PF00910.22 gi|257386289|ref|YP_003176062.1| - 0.24 11.8 0.1 9.6 6.6 0.0 2.3 2 0 0 2 2 2 0 RNA helicase Hpr_kinase_C PF07475.12 gi|257386289|ref|YP_003176062.1| - 0.29 10.7 1.3 3.4 7.2 0.1 2.3 2 0 0 2 2 2 0 HPr Serine kinase C-terminal domain zf-ribbon_3 PF13248.6 gi|257386291|ref|YP_003176064.1| - 0.058 12.8 0.1 0.12 11.9 0.1 1.5 1 0 0 1 1 1 0 zinc-ribbon domain Usp PF00582.26 gi|257386292|ref|YP_003176065.1| - 3.7e-18 66.4 0.2 5.8e-16 59.3 0.2 2.0 1 1 0 1 1 1 1 Universal stress protein family ANAPC5 PF12862.7 gi|257386292|ref|YP_003176065.1| - 0.12 12.5 0.0 0.17 12.0 0.0 1.3 1 0 0 1 1 1 0 Anaphase-promoting complex subunit 5 Acetyltransf_1 PF00583.25 gi|257386293|ref|YP_003176066.1| - 1.8e-20 73.4 0.0 2.6e-20 72.8 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|257386293|ref|YP_003176066.1| - 4.1e-13 49.4 0.0 5.4e-13 49.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|257386293|ref|YP_003176066.1| - 1.9e-12 47.4 0.0 3.2e-12 46.7 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|257386293|ref|YP_003176066.1| - 5.6e-11 43.3 0.0 6.6e-11 43.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|257386293|ref|YP_003176066.1| - 1.8e-06 27.8 0.0 2.7e-06 27.3 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|257386293|ref|YP_003176066.1| - 6.2e-05 23.1 0.0 0.3 11.2 0.0 2.2 2 0 0 2 2 2 2 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|257386293|ref|YP_003176066.1| - 0.00038 20.6 0.0 0.00048 20.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|257386293|ref|YP_003176066.1| - 0.075 13.2 0.0 0.11 12.6 0.0 1.3 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase GNAT_acetyltran PF12746.7 gi|257386293|ref|YP_003176066.1| - 0.13 11.8 0.0 0.19 11.3 0.0 1.1 1 0 0 1 1 1 0 GNAT acetyltransferase Usp PF00582.26 gi|257386294|ref|YP_003176067.1| - 1.6e-15 57.8 1.8 2.5e-15 57.2 1.8 1.2 1 0 0 1 1 1 1 Universal stress protein family Usp PF00582.26 gi|257386295|ref|YP_003176068.1| - 2.4e-35 122.1 3.5 2.7e-35 121.9 3.5 1.0 1 0 0 1 1 1 1 Universal stress protein family DNA_photolyase PF00875.18 gi|257386295|ref|YP_003176068.1| - 0.15 12.0 0.5 0.92 9.5 0.5 2.2 1 1 0 1 1 1 0 DNA photolyase PIN_9 PF18477.1 gi|257386295|ref|YP_003176068.1| - 0.29 11.5 2.2 0.57 10.5 1.5 1.8 1 1 1 2 2 2 0 PIN like domain MSP1_C PF07462.11 gi|257386295|ref|YP_003176068.1| - 0.54 8.9 1.6 0.62 8.7 1.6 1.0 1 0 0 1 1 1 0 Merozoite surface protein 1 (MSP1) C-terminus DHH PF01368.20 gi|257386296|ref|YP_003176069.1| - 0.015 15.5 1.1 0.03 14.6 1.1 1.5 1 0 0 1 1 1 0 DHH family DHHA1 PF02272.19 gi|257386296|ref|YP_003176069.1| - 0.064 13.7 0.6 0.15 12.5 0.2 1.8 2 1 0 2 2 2 0 DHHA1 domain ETF PF01012.21 gi|257386296|ref|YP_003176069.1| - 0.14 12.0 5.2 0.27 11.1 0.5 2.4 2 1 0 2 2 2 0 Electron transfer flavoprotein domain VIGSSK PF14773.6 gi|257386297|ref|YP_003176070.1| - 0.17 12.1 0.0 0.35 11.0 0.0 1.5 1 0 0 1 1 1 0 Helicase-associated putative binding domain, C-terminal Barstar PF01337.18 gi|257386298|ref|YP_003176071.1| - 0.34 11.0 2.8 0.44 10.6 0.2 2.2 2 1 0 2 2 2 0 Barstar (barnase inhibitor) T2SSF PF00482.23 gi|257386300|ref|YP_003176073.1| - 1e-13 51.4 2.9 1.1e-08 35.0 0.3 3.9 5 0 0 5 5 5 2 Type II secretion system (T2SS), protein F AAA_32 PF13654.6 gi|257386300|ref|YP_003176073.1| - 0.00023 20.1 0.1 0.00034 19.6 0.1 1.1 1 0 0 1 1 1 1 AAA domain DUF2587 PF10759.9 gi|257386300|ref|YP_003176073.1| - 0.06 12.9 0.1 9.6 5.7 0.0 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF2587) T2SSE PF00437.20 gi|257386301|ref|YP_003176074.1| - 5.1e-44 150.4 0.0 1e-43 149.4 0.0 1.5 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_16 PF13191.6 gi|257386301|ref|YP_003176074.1| - 0.00073 20.0 0.0 0.014 15.8 0.0 2.3 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|257386301|ref|YP_003176074.1| - 0.0028 18.0 0.0 0.0077 16.5 0.0 1.7 1 0 0 1 1 1 1 AAA domain ABC_tran PF00005.27 gi|257386301|ref|YP_003176074.1| - 0.0072 16.8 0.0 0.056 14.0 0.0 2.3 2 0 0 2 2 2 1 ABC transporter AAA_7 PF12775.7 gi|257386301|ref|YP_003176074.1| - 0.013 15.0 0.0 0.024 14.2 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region Dynamin_N PF00350.23 gi|257386301|ref|YP_003176074.1| - 0.035 14.2 0.0 0.079 13.0 0.0 1.6 1 0 0 1 1 1 0 Dynamin family KIX PF02172.16 gi|257386301|ref|YP_003176074.1| - 0.087 13.1 0.1 0.2 11.9 0.1 1.5 1 0 0 1 1 1 0 KIX domain AAA_15 PF13175.6 gi|257386301|ref|YP_003176074.1| - 0.091 12.4 0.1 0.55 9.9 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain ABM PF03992.16 gi|257386301|ref|YP_003176074.1| - 0.11 12.7 0.3 0.95 9.6 0.1 2.7 2 0 0 2 2 2 0 Antibiotic biosynthesis monooxygenase AIG1 PF04548.16 gi|257386301|ref|YP_003176074.1| - 0.11 11.8 0.0 0.24 10.7 0.0 1.6 1 0 0 1 1 1 0 AIG1 family FtsK_SpoIIIE PF01580.18 gi|257386301|ref|YP_003176074.1| - 0.12 11.8 0.0 0.28 10.5 0.0 1.6 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_23 PF13476.6 gi|257386301|ref|YP_003176074.1| - 0.13 12.7 0.2 3.6 8.0 0.0 2.4 2 0 0 2 2 2 0 AAA domain ATPase PF06745.13 gi|257386302|ref|YP_003176075.1| - 4.8e-15 55.5 0.1 8.1e-15 54.8 0.1 1.3 1 1 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|257386302|ref|YP_003176075.1| - 3e-06 26.9 0.0 5e-06 26.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|257386302|ref|YP_003176075.1| - 1e-05 25.8 0.0 1.6e-05 25.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain NACHT PF05729.12 gi|257386302|ref|YP_003176075.1| - 5.8e-05 23.1 0.0 0.00033 20.6 0.0 2.0 1 1 0 1 1 1 1 NACHT domain AAA_18 PF13238.6 gi|257386302|ref|YP_003176075.1| - 0.00045 20.8 0.0 0.0013 19.3 0.0 1.7 1 1 0 1 1 1 1 AAA domain TIP49 PF06068.13 gi|257386302|ref|YP_003176075.1| - 0.011 14.9 0.0 1.5 7.9 0.0 2.3 2 0 0 2 2 2 0 TIP49 P-loop domain TsaE PF02367.17 gi|257386302|ref|YP_003176075.1| - 0.016 15.2 0.0 0.12 12.4 0.0 2.1 1 1 1 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Rad51 PF08423.11 gi|257386302|ref|YP_003176075.1| - 0.021 14.1 0.1 0.1 11.8 0.0 1.9 2 0 0 2 2 2 0 Rad51 PAXNEB PF05625.11 gi|257386302|ref|YP_003176075.1| - 0.049 12.8 0.0 2.9 6.9 0.1 2.1 2 0 0 2 2 2 0 PAXNEB protein AAA_16 PF13191.6 gi|257386302|ref|YP_003176075.1| - 0.055 13.9 0.1 0.094 13.1 0.1 1.5 1 1 0 1 1 1 0 AAA ATPase domain ArsA_ATPase PF02374.15 gi|257386302|ref|YP_003176075.1| - 0.069 12.3 0.0 0.091 11.9 0.0 1.2 1 0 0 1 1 1 0 Anion-transporting ATPase MMS1_N PF10433.9 gi|257386302|ref|YP_003176075.1| - 0.11 11.1 0.2 0.14 10.7 0.2 1.1 1 0 0 1 1 1 0 Mono-functional DNA-alkylating methyl methanesulfonate N-term Arch_flagellin PF01917.16 gi|257386303|ref|YP_003176076.1| - 1.7e-20 73.8 2.6 1.9e-20 73.7 2.6 1.0 1 0 0 1 1 1 1 Archaebacterial flagellin CARDB PF07705.11 gi|257386303|ref|YP_003176076.1| - 0.0013 18.9 0.0 0.0018 18.5 0.0 1.3 1 0 0 1 1 1 1 CARDB DUF3224 PF11528.8 gi|257386303|ref|YP_003176076.1| - 0.098 12.5 0.1 0.13 12.1 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3224) Arch_flagellin PF01917.16 gi|257386304|ref|YP_003176077.1| - 6e-13 49.3 5.9 7.2e-13 49.1 5.9 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin Arch_fla_DE PF04659.13 gi|257386305|ref|YP_003176078.1| - 1.6e-26 92.0 0.0 3.3e-26 91.0 0.0 1.5 1 0 0 1 1 1 1 Archaeal flagella protein FlaC_arch PF05377.11 gi|257386305|ref|YP_003176078.1| - 8.4e-23 80.5 2.6 1.6e-22 79.7 2.6 1.5 1 0 0 1 1 1 1 Flagella accessory protein C (FlaC) Trypan_PARP PF05887.11 gi|257386305|ref|YP_003176078.1| - 0.0014 18.6 61.6 0.0014 18.6 61.6 3.9 3 1 0 4 4 2 1 Procyclic acidic repetitive protein (PARP) Dynamitin PF04912.14 gi|257386305|ref|YP_003176078.1| - 0.0058 16.0 0.5 0.011 15.1 0.5 1.3 1 0 0 1 1 1 1 Dynamitin ZapB PF06005.12 gi|257386305|ref|YP_003176078.1| - 0.011 16.2 1.6 0.02 15.3 1.6 1.3 1 0 0 1 1 1 0 Cell division protein ZapB EzrA PF06160.12 gi|257386305|ref|YP_003176078.1| - 0.028 12.6 0.0 0.039 12.1 0.0 1.1 1 0 0 1 1 1 0 Septation ring formation regulator, EzrA Sec34 PF04136.15 gi|257386305|ref|YP_003176078.1| - 0.045 13.6 0.0 0.099 12.5 0.0 1.5 1 0 0 1 1 1 0 Sec34-like family CENP-F_leu_zip PF10473.9 gi|257386305|ref|YP_003176078.1| - 0.049 13.7 0.8 0.082 12.9 0.8 1.2 1 0 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF812 PF05667.11 gi|257386305|ref|YP_003176078.1| - 0.062 12.2 0.1 0.087 11.7 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF812) DUF1664 PF07889.12 gi|257386305|ref|YP_003176078.1| - 0.069 13.2 0.4 0.12 12.4 0.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) Dynactin_p22 PF07426.11 gi|257386305|ref|YP_003176078.1| - 0.072 12.9 0.7 0.14 12.0 0.7 1.4 1 0 0 1 1 1 0 Dynactin subunit p22 HOOK PF05622.12 gi|257386305|ref|YP_003176078.1| - 0.075 11.2 0.4 0.1 10.7 0.4 1.1 1 0 0 1 1 1 0 HOOK protein APG6_N PF17675.1 gi|257386305|ref|YP_003176078.1| - 0.085 13.4 1.1 0.12 12.9 0.0 1.8 2 0 0 2 2 1 0 Apg6 coiled-coil region bZIP_1 PF00170.21 gi|257386305|ref|YP_003176078.1| - 0.13 12.3 2.0 0.87 9.7 2.0 2.1 1 1 0 1 1 1 0 bZIP transcription factor HBM PF16591.5 gi|257386305|ref|YP_003176078.1| - 0.14 11.5 0.0 0.29 10.5 0.0 1.4 1 0 0 1 1 1 0 Helical bimodular sensor domain NPV_P10 PF05531.12 gi|257386305|ref|YP_003176078.1| - 0.15 12.6 0.3 0.5 10.9 0.3 1.9 1 0 0 1 1 1 0 Nucleopolyhedrovirus P10 protein PRCC PF10253.9 gi|257386305|ref|YP_003176078.1| - 0.16 12.7 2.1 0.31 11.8 2.1 1.5 1 0 0 1 1 1 0 Mitotic checkpoint regulator, MAD2B-interacting DUF948 PF06103.11 gi|257386305|ref|YP_003176078.1| - 0.19 12.0 0.5 0.5 10.6 0.5 1.8 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF948) JIP_LZII PF16471.5 gi|257386305|ref|YP_003176078.1| - 0.22 11.7 3.9 0.39 10.9 3.9 1.4 1 0 0 1 1 1 0 JNK-interacting protein leucine zipper II Ax_dynein_light PF10211.9 gi|257386305|ref|YP_003176078.1| - 0.33 10.9 0.9 0.51 10.3 0.9 1.2 1 0 0 1 1 1 0 Axonemal dynein light chain bZIP_2 PF07716.15 gi|257386305|ref|YP_003176078.1| - 0.97 9.6 3.2 6.7 6.9 0.2 2.3 1 1 1 2 2 2 0 Basic region leucine zipper LPP PF04728.13 gi|257386305|ref|YP_003176078.1| - 7.9 7.0 7.7 0.56 10.6 0.2 2.8 3 0 0 3 3 3 0 Lipoprotein leucine-zipper CheD PF03975.13 gi|257386306|ref|YP_003176079.1| - 2.4e-30 104.9 0.1 3.3e-30 104.4 0.1 1.2 1 0 0 1 1 1 1 CheD chemotactic sensory transduction CheC PF04509.12 gi|257386307|ref|YP_003176080.1| - 3e-24 84.6 0.0 4.3e-11 42.5 0.0 2.8 2 0 0 2 2 2 2 CheC-like family CheX PF13690.6 gi|257386307|ref|YP_003176080.1| - 9.6e-15 54.5 0.1 3.7e-08 33.4 0.0 2.5 2 0 0 2 2 2 2 Chemotaxis phosphatase CheX SDH_C PF18317.1 gi|257386307|ref|YP_003176080.1| - 0.061 13.1 0.1 4.3 7.2 0.0 2.8 3 0 0 3 3 3 0 Shikimate 5'-dehydrogenase C-terminal domain Response_reg PF00072.24 gi|257386308|ref|YP_003176081.1| - 2.6e-32 111.3 0.9 2.9e-32 111.2 0.9 1.0 1 0 0 1 1 1 1 Response regulator receiver domain DHDPS PF00701.22 gi|257386308|ref|YP_003176081.1| - 0.06 12.1 0.0 0.063 12.0 0.0 1.1 1 0 0 1 1 1 0 Dihydrodipicolinate synthetase family QRPTase_C PF01729.19 gi|257386308|ref|YP_003176081.1| - 0.083 12.7 2.4 0.44 10.3 1.3 1.9 1 1 1 2 2 2 0 Quinolinate phosphoribosyl transferase, C-terminal domain DUF2868 PF11067.8 gi|257386311|ref|YP_003176084.1| - 0.21 11.0 0.0 0.25 10.8 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2868) Arch_flagellin PF01917.16 gi|257386312|ref|YP_003176085.1| - 2.8e-34 118.7 21.5 4.1e-34 118.1 21.5 1.3 1 1 0 1 1 1 1 Archaebacterial flagellin Arch_flagellin PF01917.16 gi|257386313|ref|YP_003176086.1| - 1.3e-34 119.7 13.4 1.6e-34 119.4 13.4 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin Arch_flagellin PF01917.16 gi|257386314|ref|YP_003176087.1| - 2.5e-36 125.4 15.4 2.9e-36 125.1 15.4 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin DUF4131 PF13567.6 gi|257386315|ref|YP_003176088.1| - 0.3 10.7 1.5 0.29 10.8 1.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) HTH_20 PF12840.7 gi|257386316|ref|YP_003176089.1| - 1.6e-10 40.9 0.1 2.9e-10 40.1 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|257386316|ref|YP_003176089.1| - 9e-06 25.2 0.0 1.7e-05 24.3 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|257386316|ref|YP_003176089.1| - 5.7e-05 22.8 0.0 0.00011 21.9 0.0 1.5 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_11 PF08279.12 gi|257386316|ref|YP_003176089.1| - 0.00069 19.5 0.0 0.0012 18.7 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_AsnC-type PF13404.6 gi|257386316|ref|YP_003176089.1| - 0.0017 18.1 0.0 0.0042 16.9 0.0 1.7 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain MarR_2 PF12802.7 gi|257386316|ref|YP_003176089.1| - 0.0019 18.0 0.0 0.0028 17.5 0.0 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|257386316|ref|YP_003176089.1| - 0.0028 17.5 0.0 0.0047 16.8 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|257386316|ref|YP_003176089.1| - 0.0081 16.1 0.0 0.012 15.6 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain RDV-p3 PF09231.10 gi|257386316|ref|YP_003176089.1| - 0.021 12.6 0.1 0.021 12.5 0.1 1.0 1 0 0 1 1 1 0 Rice dwarf virus p3 HemN_C PF06969.16 gi|257386316|ref|YP_003176089.1| - 0.097 12.8 0.0 0.18 11.9 0.0 1.5 1 0 0 1 1 1 0 HemN C-terminal domain ATPase PF06745.13 gi|257386317|ref|YP_003176090.1| - 4.8e-47 160.3 0.0 5.6e-47 160.0 0.0 1.0 1 0 0 1 1 1 1 KaiC AAA_25 PF13481.6 gi|257386317|ref|YP_003176090.1| - 5.8e-05 22.8 0.0 8e-05 22.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain Rad51 PF08423.11 gi|257386317|ref|YP_003176090.1| - 0.0011 18.3 0.5 0.0017 17.6 0.5 1.6 1 1 0 1 1 1 1 Rad51 AAA_24 PF13479.6 gi|257386317|ref|YP_003176090.1| - 0.0039 17.0 0.0 0.0053 16.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain DUF2075 PF09848.9 gi|257386317|ref|YP_003176090.1| - 0.0049 16.1 0.0 0.0063 15.8 0.0 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2075) DnaB_C PF03796.15 gi|257386317|ref|YP_003176090.1| - 0.04 13.3 0.0 0.053 12.8 0.0 1.2 1 0 0 1 1 1 0 DnaB-like helicase C terminal domain AAA_16 PF13191.6 gi|257386317|ref|YP_003176090.1| - 0.2 12.0 0.2 1.5 9.2 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain CheW PF01584.19 gi|257386318|ref|YP_003176091.1| - 6.7e-27 93.8 0.5 7.8e-27 93.6 0.5 1.0 1 0 0 1 1 1 1 CheW-like domain CheB_methylest PF01339.17 gi|257386319|ref|YP_003176092.1| - 4.2e-56 189.3 0.1 9.4e-56 188.2 0.0 1.6 2 0 0 2 2 2 1 CheB methylesterase Response_reg PF00072.24 gi|257386319|ref|YP_003176092.1| - 2.6e-26 92.0 0.5 6.6e-26 90.7 0.5 1.7 1 0 0 1 1 1 1 Response regulator receiver domain CheW PF01584.19 gi|257386320|ref|YP_003176093.1| - 5.9e-20 71.3 0.3 1.4e-19 70.1 0.3 1.7 1 0 0 1 1 1 1 CheW-like domain Hpt PF01627.23 gi|257386320|ref|YP_003176093.1| - 9.7e-20 70.6 1.6 5.6e-19 68.2 0.1 3.0 2 2 0 2 2 2 1 Hpt domain HATPase_c PF02518.26 gi|257386320|ref|YP_003176093.1| - 4.4e-19 69.0 0.1 1.5e-18 67.4 0.1 2.0 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase P2 PF07194.11 gi|257386320|ref|YP_003176093.1| - 1.4e-09 37.8 0.8 5.5e-09 36.0 0.0 2.4 2 0 0 2 2 2 1 P2 response regulator binding domain H-kinase_dim PF02895.14 gi|257386320|ref|YP_003176093.1| - 0.00019 21.7 2.7 0.00019 21.7 2.7 2.2 2 0 0 2 2 1 1 Signal transducing histidine kinase, homodimeric domain HATPase_c_2 PF13581.6 gi|257386320|ref|YP_003176093.1| - 0.018 15.0 0.2 0.054 13.4 0.2 1.8 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 gi|257386320|ref|YP_003176093.1| - 0.051 13.4 0.1 0.19 11.6 0.0 2.0 2 0 0 2 2 2 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF5071 PF16804.5 gi|257386320|ref|YP_003176093.1| - 0.1 12.9 0.0 0.42 10.9 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF5071) PLU-1 PF08429.11 gi|257386320|ref|YP_003176093.1| - 0.12 11.5 0.1 1.8 7.6 0.2 2.3 2 1 0 2 2 2 0 PLU-1-like protein FliS PF02561.14 gi|257386320|ref|YP_003176093.1| - 0.16 12.3 0.5 7.8 6.8 0.0 3.1 3 0 0 3 3 3 0 Flagellar protein FliS Snf7 PF03357.21 gi|257386320|ref|YP_003176093.1| - 1.3 8.6 0.0 1.3 8.6 0.0 2.7 3 1 0 3 3 3 0 Snf7 CheR PF01739.18 gi|257386321|ref|YP_003176094.1| - 7e-47 159.4 0.0 8.7e-47 159.1 0.0 1.1 1 0 0 1 1 1 1 CheR methyltransferase, SAM binding domain CheR_N PF03705.15 gi|257386321|ref|YP_003176094.1| - 1e-07 31.6 4.6 1e-07 31.6 4.6 2.3 2 0 0 2 2 2 1 CheR methyltransferase, all-alpha domain Methyltransf_31 PF13847.6 gi|257386321|ref|YP_003176094.1| - 1.3e-05 25.0 0.0 0.00027 20.8 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|257386321|ref|YP_003176094.1| - 0.00022 21.9 0.0 0.0034 18.1 0.0 2.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|257386321|ref|YP_003176094.1| - 0.00022 21.9 0.0 0.039 14.6 0.0 2.6 2 1 1 3 3 3 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|257386321|ref|YP_003176094.1| - 0.014 16.0 0.0 0.14 12.8 0.0 2.3 1 1 0 1 1 1 0 Methyltransferase domain HEAT_2 PF13646.6 gi|257386322|ref|YP_003176095.1| - 9e-61 202.3 32.8 1.4e-19 70.2 1.8 5.6 1 1 4 6 6 6 6 HEAT repeats HEAT PF02985.22 gi|257386322|ref|YP_003176095.1| - 1.4e-29 99.6 7.8 0.022 15.0 0.0 11.0 12 0 0 12 12 11 7 HEAT repeat HEAT_EZ PF13513.6 gi|257386322|ref|YP_003176095.1| - 5.1e-23 81.1 14.1 0.002 18.6 0.2 9.4 7 2 4 11 11 11 5 HEAT-like repeat HEAT_PBS PF03130.16 gi|257386322|ref|YP_003176095.1| - 5.2e-21 73.2 17.4 0.00032 21.1 0.4 9.5 9 1 0 9 9 9 4 PBS lyase HEAT-like repeat Cnd1 PF12717.7 gi|257386322|ref|YP_003176095.1| - 2.2e-13 50.6 1.7 0.0025 17.9 0.4 6.4 2 1 1 4 4 4 2 non-SMC mitotic condensation complex subunit 1 Arm PF00514.23 gi|257386322|ref|YP_003176095.1| - 8.7e-11 41.5 0.4 0.028 14.5 0.0 7.9 10 0 0 10 10 10 2 Armadillo/beta-catenin-like repeat Adaptin_N PF01602.20 gi|257386322|ref|YP_003176095.1| - 2.6e-08 32.9 0.1 0.00042 19.0 0.2 4.2 2 1 2 5 5 5 2 Adaptin N terminal region ERAP1_C PF11838.8 gi|257386322|ref|YP_003176095.1| - 2.4e-06 27.3 1.4 0.05 13.1 0.0 3.2 1 1 0 3 3 3 2 ERAP1-like C-terminal domain Vitellogenin_N PF01347.22 gi|257386322|ref|YP_003176095.1| - 7e-05 21.4 0.0 0.0028 16.1 0.0 2.4 1 1 1 2 2 2 1 Lipoprotein amino terminal region DUF2019 PF09450.10 gi|257386322|ref|YP_003176095.1| - 0.00098 19.0 4.8 8.5 6.4 0.1 4.5 3 1 2 5 5 5 2 Domain of unknown function (DUF2019) ThylakoidFormat PF11264.8 gi|257386322|ref|YP_003176095.1| - 0.0025 17.5 0.0 2.1 8.0 0.0 2.8 2 0 0 2 2 2 2 Thylakoid formation protein API5 PF05918.11 gi|257386322|ref|YP_003176095.1| - 0.0065 15.3 4.3 2.4 6.9 0.0 3.2 3 0 0 3 3 3 2 Apoptosis inhibitory protein 5 (API5) Aconitase_B_N PF11791.8 gi|257386322|ref|YP_003176095.1| - 0.016 15.2 0.4 4.1 7.5 0.0 3.9 3 2 0 3 3 3 0 Aconitate B N-terminal domain PI3Ka PF00613.20 gi|257386322|ref|YP_003176095.1| - 0.03 13.7 0.0 17 4.8 0.0 3.0 3 0 0 3 3 3 0 Phosphoinositide 3-kinase family, accessory domain (PIK domain) MMS19_N PF14500.6 gi|257386322|ref|YP_003176095.1| - 0.15 11.6 0.3 1.1 8.7 0.1 2.4 2 1 0 2 2 2 0 Dos2-interacting transcription regulator of RNA-Pol-II CLASP_N PF12348.8 gi|257386322|ref|YP_003176095.1| - 0.19 11.2 0.0 1.5 8.3 0.0 2.4 1 1 0 2 2 2 0 CLASP N terminal CheF-arch PF04283.12 gi|257386323|ref|YP_003176096.1| - 1.3e-71 240.8 3.6 1.7e-71 240.5 3.6 1.1 1 0 0 1 1 1 1 Chemotaxis signal transduction system protein F from archaea bPH_4 PF06713.11 gi|257386323|ref|YP_003176096.1| - 0.0018 18.3 0.1 0.0034 17.4 0.1 1.4 1 0 0 1 1 1 1 Bacterial PH domain bPH_5 PF10882.8 gi|257386323|ref|YP_003176096.1| - 0.01 15.9 0.1 0.74 9.9 0.1 2.4 1 1 1 2 2 2 0 Bacterial PH domain Vps36_ESCRT-II PF11605.8 gi|257386323|ref|YP_003176096.1| - 0.019 15.1 0.0 0.047 13.9 0.0 1.6 1 0 0 1 1 1 0 Vacuolar protein sorting protein 36 Vps36 bPH_3 PF14470.6 gi|257386323|ref|YP_003176096.1| - 0.1 12.9 0.0 0.25 11.7 0.0 1.7 1 1 0 1 1 1 0 Bacterial PH domain CheF-arch PF04283.12 gi|257386324|ref|YP_003176097.1| - 9.7e-70 234.7 0.3 1.2e-69 234.4 0.3 1.1 1 0 0 1 1 1 1 Chemotaxis signal transduction system protein F from archaea MarR PF01047.22 gi|257386324|ref|YP_003176097.1| - 6.9e-05 22.7 0.0 0.00015 21.6 0.0 1.6 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|257386324|ref|YP_003176097.1| - 0.0014 18.5 0.0 0.0078 16.1 0.0 2.2 2 0 0 2 2 2 1 MarR family TrmB PF01978.19 gi|257386324|ref|YP_003176097.1| - 0.0048 16.7 0.0 0.0091 15.9 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|257386324|ref|YP_003176097.1| - 0.026 14.1 0.0 0.05 13.2 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|257386324|ref|YP_003176097.1| - 0.057 13.4 0.0 0.17 11.8 0.0 1.8 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain GRAM PF02893.20 gi|257386324|ref|YP_003176097.1| - 0.075 12.9 0.0 1.1 9.2 0.0 2.2 2 0 0 2 2 2 0 GRAM domain Ribosomal_S6e PF01092.19 gi|257386326|ref|YP_003176099.1| - 3.1e-40 137.0 0.1 3.4e-40 136.9 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S6e Peptidase_M29 PF02073.15 gi|257386328|ref|YP_003176101.1| - 1.3e-61 208.6 0.0 1.5e-61 208.4 0.0 1.0 1 0 0 1 1 1 1 Thermophilic metalloprotease (M29) Phage_TAC_7 PF10109.9 gi|257386328|ref|YP_003176101.1| - 0.11 12.6 0.2 2.1 8.5 0.0 2.4 2 0 0 2 2 2 0 Phage tail assembly chaperone proteins, E, or 41 or 14 DUF4648 PF15505.6 gi|257386328|ref|YP_003176101.1| - 0.16 12.8 0.2 0.37 11.7 0.2 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4648) GFO_IDH_MocA PF01408.22 gi|257386329|ref|YP_003176102.1| - 7e-20 72.0 0.0 1.8e-19 70.7 0.0 1.7 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|257386329|ref|YP_003176102.1| - 0.019 15.0 0.0 0.04 13.9 0.0 1.6 1 0 0 1 1 1 0 Oxidoreductase family, C-terminal alpha/beta domain MCPsignal PF00015.21 gi|257386330|ref|YP_003176103.1| - 5.6e-44 150.0 65.3 9.2e-43 146.0 25.8 6.0 2 2 3 6 6 6 3 Methyl-accepting chemotaxis protein (MCP) signalling domain dCache_1 PF02743.18 gi|257386330|ref|YP_003176103.1| - 8.3e-20 71.6 0.3 8.3e-20 71.6 0.3 5.3 5 2 1 6 6 6 2 Cache domain Cache_3-Cache_2 PF17201.4 gi|257386330|ref|YP_003176103.1| - 9.5e-18 64.5 2.6 1.2e-12 47.7 0.1 4.9 4 1 0 5 5 5 2 Cache 3/Cache 2 fusion domain HAMP PF00672.25 gi|257386330|ref|YP_003176103.1| - 3.5e-10 40.1 0.3 3.5e-10 40.1 0.3 6.0 6 1 1 7 7 6 1 HAMP domain dCache_2 PF08269.11 gi|257386330|ref|YP_003176103.1| - 4e-09 36.1 9.3 4.4e-07 29.4 0.1 3.7 3 1 1 4 4 4 2 Cache domain sCache_2 PF17200.4 gi|257386330|ref|YP_003176103.1| - 2e-07 31.0 3.0 3.1e-06 27.1 0.8 5.0 5 0 0 5 5 5 2 Single Cache domain 2 DMSP_lyase PF16867.5 gi|257386330|ref|YP_003176103.1| - 0.17 11.5 1.4 1.8 8.2 0.0 3.0 2 0 0 2 2 2 0 Dimethlysulfonioproprionate lyase DUF948 PF06103.11 gi|257386330|ref|YP_003176103.1| - 0.17 12.1 40.1 0.67 10.3 3.7 7.8 5 3 4 9 9 9 0 Bacterial protein of unknown function (DUF948) BLOC1_2 PF10046.9 gi|257386330|ref|YP_003176103.1| - 0.46 10.8 28.1 1.8 8.9 1.1 5.9 6 1 1 7 7 7 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 CorA PF01544.18 gi|257386330|ref|YP_003176103.1| - 0.95 8.7 20.6 2.3 7.5 0.6 3.7 3 0 0 3 3 3 0 CorA-like Mg2+ transporter protein Laminin_II PF06009.12 gi|257386330|ref|YP_003176103.1| - 2.2 8.3 39.2 1.9 8.5 9.3 5.7 3 2 3 6 6 6 0 Laminin Domain II AAA_13 PF13166.6 gi|257386330|ref|YP_003176103.1| - 5.8 5.4 34.6 0.048 12.3 8.7 2.9 3 1 0 4 4 4 0 AAA domain DUF1664 PF07889.12 gi|257386330|ref|YP_003176103.1| - 6.1 6.9 34.8 3.2 7.8 3.6 6.4 3 3 4 7 7 7 0 Protein of unknown function (DUF1664) QRPTase_C PF01729.19 gi|257386331|ref|YP_003176104.1| - 3.7e-13 49.6 0.0 5.1e-13 49.2 0.0 1.2 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 gi|257386331|ref|YP_003176104.1| - 0.00016 21.7 0.0 0.00047 20.1 0.0 1.8 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, N-terminal domain Aldo_ket_red PF00248.21 gi|257386334|ref|YP_003176107.1| - 4.7e-64 216.4 0.0 1.8e-62 211.2 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family HTH_Tnp_Mu_1 PF02316.16 gi|257386334|ref|YP_003176107.1| - 0.15 12.2 0.0 0.3 11.2 0.0 1.4 1 0 0 1 1 1 0 Mu DNA-binding domain CarboxypepD_reg PF13620.6 gi|257386336|ref|YP_003176109.1| - 1.5e-18 66.8 37.4 2.9e-07 30.7 2.4 4.4 4 0 0 4 4 4 4 Carboxypeptidase regulatory-like domain PEGA PF08308.11 gi|257386336|ref|YP_003176109.1| - 4.2e-07 29.8 7.2 0.022 14.7 0.5 4.1 4 0 0 4 4 4 3 PEGA domain CarbopepD_reg_2 PF13715.6 gi|257386336|ref|YP_003176109.1| - 5e-07 29.6 10.0 0.0023 17.9 1.6 3.7 2 1 1 3 3 3 2 CarboxypepD_reg-like domain DUF824 PF05688.11 gi|257386336|ref|YP_003176109.1| - 6e-06 26.0 4.0 0.0066 16.2 0.0 4.5 4 0 0 4 4 4 2 Salmonella repeat of unknown function (DUF824) fn3_3 PF14686.6 gi|257386336|ref|YP_003176109.1| - 7.9e-05 22.4 1.5 0.00034 20.3 0.1 2.7 2 0 0 2 2 2 1 Polysaccharide lyase family 4, domain II Big_1 PF02369.16 gi|257386336|ref|YP_003176109.1| - 0.00035 20.5 40.9 0.0044 17.0 3.6 6.2 4 3 1 5 5 5 2 Bacterial Ig-like domain (group 1) BiPBP_C PF06832.12 gi|257386336|ref|YP_003176109.1| - 0.00097 19.1 4.0 0.072 13.1 0.1 4.7 4 1 0 4 4 4 1 Penicillin-Binding Protein C-terminus Family SoxE PF06525.11 gi|257386336|ref|YP_003176109.1| - 0.0046 16.5 0.7 0.1 12.1 0.0 2.5 2 0 0 2 2 2 1 Sulfocyanin (SoxE) domain MG4 PF17789.1 gi|257386336|ref|YP_003176109.1| - 0.033 14.3 13.1 1.5 9.0 0.1 4.5 3 2 1 4 4 4 0 Macroglobulin domain MG4 DUF4198 PF10670.9 gi|257386336|ref|YP_003176109.1| - 0.039 14.3 5.7 6.6 7.0 0.4 3.7 1 1 0 3 3 3 0 Domain of unknown function (DUF4198) DUF1455 PF07306.11 gi|257386336|ref|YP_003176109.1| - 0.58 10.1 7.0 3.2 7.7 1.0 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF1455) GCV_T PF01571.21 gi|257386337|ref|YP_003176110.1| - 3.8e-42 144.4 0.0 7.3e-42 143.5 0.0 1.4 2 0 0 2 2 2 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.11 gi|257386337|ref|YP_003176110.1| - 2.7e-12 46.4 0.1 7e-12 45.1 0.1 1.7 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain PIN PF01850.21 gi|257386338|ref|YP_003176111.1| - 2.5e-14 53.8 0.1 2.8e-14 53.7 0.1 1.0 1 0 0 1 1 1 1 PIN domain DUF5615 PF18480.1 gi|257386338|ref|YP_003176111.1| - 0.046 13.5 0.0 0.06 13.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5615) VAPB_antitox PF02697.14 gi|257386339|ref|YP_003176112.1| - 1.7e-15 57.6 0.1 1.9e-15 57.4 0.1 1.1 1 0 0 1 1 1 1 Putative antitoxin FAD_binding_3 PF01494.19 gi|257386340|ref|YP_003176113.1| - 5.7e-14 52.1 1.4 7.6e-10 38.5 0.0 3.0 3 0 0 3 3 3 3 FAD binding domain Lycopene_cycl PF05834.12 gi|257386340|ref|YP_003176113.1| - 6.9e-09 35.2 0.1 0.00034 19.8 0.1 2.3 1 1 1 2 2 2 2 Lycopene cyclase protein Pyr_redox_2 PF07992.14 gi|257386340|ref|YP_003176113.1| - 3.1e-07 29.9 0.7 0.00012 21.4 0.0 2.2 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|257386340|ref|YP_003176113.1| - 1.1e-05 25.2 1.9 0.039 13.5 0.1 2.6 1 1 1 3 3 3 2 FAD dependent oxidoreductase FAD_oxidored PF12831.7 gi|257386340|ref|YP_003176113.1| - 0.00023 20.7 0.0 0.00049 19.6 0.1 1.5 2 0 0 2 2 2 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|257386340|ref|YP_003176113.1| - 0.00047 19.0 0.0 0.0042 15.8 0.0 1.9 2 0 0 2 2 2 1 HI0933-like protein FAD_binding_2 PF00890.24 gi|257386340|ref|YP_003176113.1| - 0.00052 19.2 2.6 0.01 14.9 0.2 2.3 1 1 0 2 2 2 1 FAD binding domain NAD_binding_8 PF13450.6 gi|257386340|ref|YP_003176113.1| - 0.0014 18.8 0.7 0.0049 17.1 0.2 2.4 2 1 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.6 gi|257386340|ref|YP_003176113.1| - 0.035 13.4 0.1 0.23 10.7 0.1 1.9 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|257386340|ref|YP_003176113.1| - 0.19 12.3 0.3 17 6.1 0.0 2.3 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase DUF2892 PF11127.8 gi|257386341|ref|YP_003176114.1| - 5.4 7.1 9.4 0.31 11.1 2.4 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF2892) DZR PF12773.7 gi|257386342|ref|YP_003176115.1| - 0.041 13.9 0.5 0.062 13.3 0.5 1.3 1 1 0 1 1 1 0 Double zinc ribbon HNH_5 PF14279.6 gi|257386342|ref|YP_003176115.1| - 0.081 12.8 0.0 2.2 8.2 0.0 2.1 2 0 0 2 2 2 0 HNH endonuclease RNB PF00773.19 gi|257386343|ref|YP_003176116.1| - 1.1e-80 271.4 0.0 2e-79 267.3 0.0 2.0 1 1 0 1 1 1 1 RNB domain HxlR PF01638.17 gi|257386344|ref|YP_003176117.1| - 1.8e-26 91.8 0.0 2.8e-26 91.2 0.0 1.3 2 0 0 2 2 2 1 HxlR-like helix-turn-helix PadR PF03551.14 gi|257386344|ref|YP_003176117.1| - 0.12 12.4 0.0 0.18 11.8 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family Peptidase_S13 PF02113.15 gi|257386346|ref|YP_003176119.1| - 0.065 11.9 0.0 0.069 11.9 0.0 1.0 1 0 0 1 1 1 0 D-Ala-D-Ala carboxypeptidase 3 (S13) family SQS_PSY PF00494.19 gi|257386347|ref|YP_003176120.1| - 3.9e-64 216.7 12.0 4.9e-64 216.4 12.0 1.0 1 0 0 1 1 1 1 Squalene/phytoene synthase Ribosomal_L15e PF00827.17 gi|257386348|ref|YP_003176121.1| - 1e-78 263.5 6.3 1.1e-78 263.3 6.3 1.0 1 0 0 1 1 1 1 Ribosomal L15 Peripla_BP_2 PF01497.18 gi|257386349|ref|YP_003176122.1| - 5e-24 85.2 0.0 6.5e-24 84.8 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein ThiF PF00899.21 gi|257386350|ref|YP_003176123.1| - 9.3e-68 228.2 0.0 1.2e-67 227.8 0.0 1.0 1 0 0 1 1 1 1 ThiF family Sacchrp_dh_NADP PF03435.18 gi|257386350|ref|YP_003176123.1| - 0.00017 21.8 0.3 0.00057 20.1 0.3 1.8 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain PglD_N PF17836.1 gi|257386350|ref|YP_003176123.1| - 0.016 15.8 0.1 0.034 14.8 0.1 1.6 1 1 0 1 1 1 0 PglD N-terminal domain Shikimate_DH PF01488.20 gi|257386350|ref|YP_003176123.1| - 0.027 14.6 0.1 0.06 13.4 0.0 1.6 1 1 1 2 2 2 0 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.6 gi|257386350|ref|YP_003176123.1| - 0.06 13.8 0.0 0.11 13.0 0.0 1.3 1 0 0 1 1 1 0 Putative NAD(P)-binding FdhE PF04216.12 gi|257386350|ref|YP_003176123.1| - 0.11 12.4 0.2 0.2 11.5 0.2 1.4 1 0 0 1 1 1 0 Protein involved in formate dehydrogenase formation MCPsignal PF00015.21 gi|257386351|ref|YP_003176124.1| - 2.1e-49 167.7 52.3 1.4e-45 155.2 29.0 3.6 1 1 2 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF948 PF06103.11 gi|257386351|ref|YP_003176124.1| - 1e-07 32.1 24.2 0.0027 17.9 0.8 4.8 3 1 1 4 4 4 3 Bacterial protein of unknown function (DUF948) Laminin_II PF06009.12 gi|257386351|ref|YP_003176124.1| - 1.2e-07 31.9 30.1 0.0002 21.4 2.1 4.2 2 2 2 4 4 4 3 Laminin Domain II ApoLp-III PF07464.11 gi|257386351|ref|YP_003176124.1| - 4.3e-06 26.9 27.9 0.00082 19.5 11.0 2.6 2 1 0 2 2 2 2 Apolipophorin-III precursor (apoLp-III) DUF1664 PF07889.12 gi|257386351|ref|YP_003176124.1| - 2.7e-05 24.2 26.1 0.013 15.6 1.9 4.5 2 2 2 4 4 4 4 Protein of unknown function (DUF1664) DASH_Duo1 PF08651.10 gi|257386351|ref|YP_003176124.1| - 0.001 18.8 8.7 2.8 7.8 0.1 4.7 4 1 1 5 5 5 0 DASH complex subunit Duo1 BLOC1_2 PF10046.9 gi|257386351|ref|YP_003176124.1| - 0.0012 19.2 22.5 3 8.2 0.8 4.8 2 2 1 4 4 4 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 WXG100 PF06013.12 gi|257386351|ref|YP_003176124.1| - 0.0013 18.9 30.6 2.3 8.5 2.9 6.1 2 2 1 4 4 4 1 Proteins of 100 residues with WXG Sec34 PF04136.15 gi|257386351|ref|YP_003176124.1| - 0.004 17.0 8.5 2.2 8.1 0.2 3.9 2 2 3 5 5 5 2 Sec34-like family Vps53_N PF04100.12 gi|257386351|ref|YP_003176124.1| - 0.0056 15.7 24.3 0.23 10.4 11.2 3.3 2 1 0 2 2 2 2 Vps53-like, N-terminal KASH_CCD PF14662.6 gi|257386351|ref|YP_003176124.1| - 0.022 14.6 16.5 0.3 10.9 6.8 2.6 2 1 0 2 2 2 0 Coiled-coil region of CCDC155 or KASH Fib_alpha PF08702.10 gi|257386351|ref|YP_003176124.1| - 0.029 14.5 16.6 0.37 11.0 1.6 3.9 2 2 3 5 5 5 0 Fibrinogen alpha/beta chain family DUF2203 PF09969.9 gi|257386351|ref|YP_003176124.1| - 0.034 14.9 1.7 0.034 14.9 1.7 4.3 1 1 4 5 5 5 0 Uncharacterized conserved protein (DUF2203) Syntaxin-6_N PF09177.11 gi|257386351|ref|YP_003176124.1| - 0.042 14.4 21.8 0.24 12.0 3.1 4.3 2 2 2 4 4 4 0 Syntaxin 6, N-terminal NPV_P10 PF05531.12 gi|257386351|ref|YP_003176124.1| - 0.042 14.3 25.8 5 7.7 1.0 5.8 2 2 2 4 4 4 0 Nucleopolyhedrovirus P10 protein LPP PF04728.13 gi|257386351|ref|YP_003176124.1| - 0.046 14.1 2.0 0.046 14.1 2.0 6.5 5 2 1 6 6 5 0 Lipoprotein leucine-zipper DUF4795 PF16043.5 gi|257386351|ref|YP_003176124.1| - 0.062 12.9 16.2 1.1 8.8 4.0 3.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4795) Vps54_N PF10475.9 gi|257386351|ref|YP_003176124.1| - 0.07 12.4 6.7 0.071 12.4 3.3 2.4 1 1 1 2 2 2 0 Vacuolar-sorting protein 54, of GARP complex Serine_rich PF08824.10 gi|257386351|ref|YP_003176124.1| - 0.074 13.1 11.7 0.6 10.1 3.0 2.5 2 0 0 2 2 2 0 Serine rich protein interaction domain COG6 PF06419.11 gi|257386351|ref|YP_003176124.1| - 0.075 11.2 11.5 0.29 9.3 1.8 3.0 2 1 0 3 3 3 0 Conserved oligomeric complex COG6 DUF4763 PF15960.5 gi|257386351|ref|YP_003176124.1| - 0.079 12.3 0.2 0.079 12.3 0.2 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF4763) DASH_Dam1 PF08653.10 gi|257386351|ref|YP_003176124.1| - 0.08 12.8 6.5 19 5.1 0.0 5.0 6 0 0 6 6 5 0 DASH complex subunit Dam1 YscO PF07321.12 gi|257386351|ref|YP_003176124.1| - 0.1 12.6 26.1 0.082 12.9 6.0 3.2 1 1 2 3 3 3 0 Type III secretion protein YscO Spc7 PF08317.11 gi|257386351|ref|YP_003176124.1| - 0.12 11.2 25.9 0.66 8.8 9.0 2.7 1 1 1 2 2 2 0 Spc7 kinetochore protein SpecificRecomb PF10136.9 gi|257386351|ref|YP_003176124.1| - 0.22 9.8 14.0 0.027 12.8 6.7 2.0 1 1 1 2 2 2 0 Site-specific recombinase HBM PF16591.5 gi|257386351|ref|YP_003176124.1| - 0.24 10.8 28.7 0.014 14.8 6.1 3.1 1 1 2 3 3 3 0 Helical bimodular sensor domain HOOK PF05622.12 gi|257386351|ref|YP_003176124.1| - 0.25 9.4 19.9 1.2 7.2 7.6 2.1 1 1 1 2 2 2 0 HOOK protein Dynactin_p22 PF07426.11 gi|257386351|ref|YP_003176124.1| - 0.26 11.1 6.5 13 5.6 0.2 4.1 2 2 1 3 3 3 0 Dynactin subunit p22 FlaC_arch PF05377.11 gi|257386351|ref|YP_003176124.1| - 0.38 11.2 25.9 1.5 9.2 3.3 6.4 3 2 3 7 7 5 0 Flagella accessory protein C (FlaC) Mce4_CUP1 PF11887.8 gi|257386351|ref|YP_003176124.1| - 0.41 10.0 13.6 2.3 7.6 1.4 3.5 1 1 2 3 3 3 0 Cholesterol uptake porter CUP1 of Mce4, putative TMPIT PF07851.13 gi|257386351|ref|YP_003176124.1| - 0.46 9.7 12.9 1.3 8.2 3.0 3.3 1 1 3 4 4 4 0 TMPIT-like protein DASH_Dad4 PF08650.10 gi|257386351|ref|YP_003176124.1| - 0.49 10.4 7.2 6.6 6.8 0.1 4.2 3 2 2 5 5 4 0 DASH complex subunit Dad4 DASH_Dad2 PF08654.10 gi|257386351|ref|YP_003176124.1| - 0.5 10.8 22.4 1.4 9.4 3.1 4.3 1 1 3 4 4 4 0 DASH complex subunit Dad2 YabA PF06156.13 gi|257386351|ref|YP_003176124.1| - 0.51 11.0 9.1 1.4 9.6 0.5 3.8 2 2 1 3 3 3 0 Initiation control protein YabA DUF2205 PF10224.9 gi|257386351|ref|YP_003176124.1| - 0.52 10.4 9.7 0.65 10.0 0.3 3.9 3 1 1 4 4 3 0 Short coiled-coil protein ATG16 PF08614.11 gi|257386351|ref|YP_003176124.1| - 0.52 10.5 22.4 0.15 12.3 7.1 3.4 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) TBCC_N PF16752.5 gi|257386351|ref|YP_003176124.1| - 0.54 10.7 21.6 4.1 7.9 1.2 4.2 2 1 2 4 4 4 0 Tubulin-specific chaperone C N-terminal domain IFT57 PF10498.9 gi|257386351|ref|YP_003176124.1| - 0.56 9.1 17.1 2.1 7.2 4.7 2.7 1 1 0 2 2 2 0 Intra-flagellar transport protein 57 USP8_interact PF08941.10 gi|257386351|ref|YP_003176124.1| - 0.58 9.9 5.4 8.3 6.2 0.1 3.0 1 1 2 3 3 3 0 USP8 interacting AAA_13 PF13166.6 gi|257386351|ref|YP_003176124.1| - 0.67 8.5 25.5 1.8 7.1 8.6 2.2 1 1 0 2 2 2 0 AAA domain FUSC PF04632.12 gi|257386351|ref|YP_003176124.1| - 0.78 8.2 16.8 0.64 8.5 5.5 2.1 1 1 1 2 2 2 0 Fusaric acid resistance protein family GAS PF13851.6 gi|257386351|ref|YP_003176124.1| - 0.79 9.0 8.8 1.2 8.5 0.9 2.8 1 1 2 3 3 3 0 Growth-arrest specific micro-tubule binding LOH1CR12 PF10158.9 gi|257386351|ref|YP_003176124.1| - 0.81 9.7 13.3 2.3 8.2 0.9 4.2 1 1 5 6 6 6 0 Tumour suppressor protein Prominin PF05478.11 gi|257386351|ref|YP_003176124.1| - 0.88 7.4 11.4 0.48 8.3 5.3 2.2 1 1 1 2 2 2 0 Prominin DUF1759 PF03564.15 gi|257386351|ref|YP_003176124.1| - 0.89 9.5 6.7 39 4.1 0.2 3.7 2 2 1 3 3 3 0 Protein of unknown function (DUF1759) UPF0242 PF06785.11 gi|257386351|ref|YP_003176124.1| - 0.89 9.6 14.3 8.7 6.4 4.0 3.0 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus DUF4618 PF15397.6 gi|257386351|ref|YP_003176124.1| - 0.99 8.8 12.2 1.7 8.0 1.3 3.7 1 1 1 3 3 3 0 Domain of unknown function (DUF4618) FlgN PF05130.12 gi|257386351|ref|YP_003176124.1| - 1.1 9.7 21.4 1.7 9.1 3.9 3.4 1 1 2 3 3 3 0 FlgN protein Cauli_AT PF03233.13 gi|257386351|ref|YP_003176124.1| - 1.2 9.0 8.1 12 5.8 0.3 3.4 1 1 1 3 3 3 0 Aphid transmission protein T7SS_ESX_EspC PF10824.8 gi|257386351|ref|YP_003176124.1| - 1.3 9.5 33.2 0.079 13.4 1.4 4.6 2 2 2 4 4 4 0 Excreted virulence factor EspC, type VII ESX diderm Exonuc_VII_S PF02609.16 gi|257386351|ref|YP_003176124.1| - 1.3 9.1 7.9 0.51 10.5 0.8 3.7 3 1 0 3 3 3 0 Exonuclease VII small subunit ISG65-75 PF11727.8 gi|257386351|ref|YP_003176124.1| - 1.4 8.1 30.6 1 8.5 7.0 3.1 1 1 2 3 3 3 0 Invariant surface glycoprotein HisKA PF00512.25 gi|257386351|ref|YP_003176124.1| - 1.5 8.9 11.9 11 6.2 3.0 4.8 2 2 1 3 3 3 0 His Kinase A (phospho-acceptor) domain TPR_MLP1_2 PF07926.12 gi|257386351|ref|YP_003176124.1| - 1.7 8.7 30.9 4.6 7.3 1.9 3.6 1 1 1 3 3 3 0 TPR/MLP1/MLP2-like protein DUF4200 PF13863.6 gi|257386351|ref|YP_003176124.1| - 1.7 9.0 14.1 4.3 7.8 1.7 3.5 2 2 2 4 4 4 0 Domain of unknown function (DUF4200) Atg14 PF10186.9 gi|257386351|ref|YP_003176124.1| - 2.1 7.3 10.9 1.1 8.3 3.3 2.4 2 1 0 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 TMF_TATA_bd PF12325.8 gi|257386351|ref|YP_003176124.1| - 2.3 8.5 23.1 1.8 8.8 4.3 3.8 2 2 2 4 4 3 0 TATA element modulatory factor 1 TATA binding YkyA PF10368.9 gi|257386351|ref|YP_003176124.1| - 2.5 7.8 27.7 2.7 7.6 9.6 3.2 2 2 1 3 3 3 0 Putative cell-wall binding lipoprotein DUF1993 PF09351.10 gi|257386351|ref|YP_003176124.1| - 3.8 7.6 15.6 1.6 8.9 0.2 4.0 1 1 2 4 4 4 0 Domain of unknown function (DUF1993) ERM PF00769.19 gi|257386351|ref|YP_003176124.1| - 5 6.9 25.2 6 6.6 7.6 2.4 1 1 0 2 2 2 0 Ezrin/radixin/moesin family DUF724 PF05266.14 gi|257386351|ref|YP_003176124.1| - 5.3 6.8 15.5 16 5.3 0.5 3.4 1 1 2 3 3 3 0 Protein of unknown function (DUF724) Seryl_tRNA_N PF02403.22 gi|257386351|ref|YP_003176124.1| - 5.9 7.2 25.0 1.9 8.7 3.3 4.1 1 1 4 5 5 5 0 Seryl-tRNA synthetase N-terminal domain Fez1 PF06818.15 gi|257386351|ref|YP_003176124.1| - 6.7 7.1 18.5 4.9 7.6 5.4 2.3 1 1 1 2 2 2 0 Fez1 Dor1 PF04124.12 gi|257386351|ref|YP_003176124.1| - 6.7 5.3 10.3 12 4.4 5.1 2.8 1 1 1 2 2 2 0 Dor1-like family TolA_bind_tri PF16331.5 gi|257386351|ref|YP_003176124.1| - 6.9 6.8 16.3 0.039 14.0 2.6 3.7 4 1 0 4 4 3 0 TolA binding protein trimerisation AIP3 PF03915.13 gi|257386351|ref|YP_003176124.1| - 7.2 5.6 22.6 3.3 6.7 8.6 2.4 1 1 1 2 2 2 0 Actin interacting protein 3 Nup54 PF13874.6 gi|257386351|ref|YP_003176124.1| - 7.3 6.7 14.6 1.5 9.0 1.7 3.4 2 2 1 3 3 3 0 Nucleoporin complex subunit 54 Spectrin PF00435.21 gi|257386351|ref|YP_003176124.1| - 7.6 7.1 21.9 5 7.7 2.7 4.8 1 1 4 5 5 5 0 Spectrin repeat RAC_head PF16717.5 gi|257386351|ref|YP_003176124.1| - 8.4 7.4 22.5 0.18 12.8 2.1 3.8 3 1 0 3 3 3 0 Ribosome-associated complex head domain APG17 PF04108.12 gi|257386351|ref|YP_003176124.1| - 8.8 5.3 22.9 2.7 7.0 3.7 3.2 1 1 2 3 3 3 0 Autophagy protein Apg17 Allexi_40kDa PF05549.11 gi|257386351|ref|YP_003176124.1| - 8.9 5.7 11.4 12 5.3 1.6 3.0 1 1 1 3 3 3 0 Allexivirus 40kDa protein Peptidase_M32 PF02074.15 gi|257386352|ref|YP_003176125.1| - 2.7e-173 577.2 0.0 3.1e-173 577.0 0.0 1.0 1 0 0 1 1 1 1 Carboxypeptidase Taq (M32) metallopeptidase Ribonuc_L-PSP PF01042.21 gi|257386353|ref|YP_003176126.1| - 1.2e-27 96.3 0.1 1.5e-27 96.1 0.1 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP DUF4088 PF13317.6 gi|257386353|ref|YP_003176126.1| - 0.13 11.8 0.0 0.16 11.5 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF4088) PAS_4 PF08448.10 gi|257386356|ref|YP_003176129.1| - 1.2e-33 115.7 2.7 6.6e-14 52.1 0.1 3.8 3 0 0 3 3 3 3 PAS fold PAS_9 PF13426.7 gi|257386356|ref|YP_003176129.1| - 1.4e-33 115.2 0.0 9.1e-17 61.2 0.0 3.4 3 0 0 3 3 3 3 PAS domain PAS PF00989.25 gi|257386356|ref|YP_003176129.1| - 2.5e-21 75.8 0.0 1e-10 41.6 0.0 2.9 3 0 0 3 3 3 2 PAS fold PAS_3 PF08447.12 gi|257386356|ref|YP_003176129.1| - 6.4e-13 48.8 0.0 1.3e-06 28.6 0.0 3.3 4 0 0 4 4 4 2 PAS fold PAS_8 PF13188.7 gi|257386356|ref|YP_003176129.1| - 5.1e-07 29.6 0.2 0.0015 18.5 0.0 3.4 3 0 0 3 3 3 2 PAS domain HisKA PF00512.25 gi|257386356|ref|YP_003176129.1| - 4e-05 23.6 1.4 0.0001 22.3 0.2 2.4 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain Response_reg PF00072.24 gi|257386356|ref|YP_003176129.1| - 0.081 13.1 0.1 0.3 11.3 0.0 2.0 2 0 0 2 2 2 0 Response regulator receiver domain HalOD2 PF18547.1 gi|257386357|ref|YP_003176130.1| - 7.8e-27 92.9 7.3 1.2e-26 92.4 7.3 1.3 1 0 0 1 1 1 1 Halobacterial output domain 2 Zn_ribbon_SprT PF17283.2 gi|257386357|ref|YP_003176130.1| - 0.095 12.6 3.0 0.79 9.7 0.2 2.6 2 0 0 2 2 2 0 SprT-like zinc ribbon domain Mst1_SARAH PF11629.8 gi|257386357|ref|YP_003176130.1| - 0.24 11.5 5.0 0.52 10.4 0.9 3.0 1 1 1 2 2 2 0 C terminal SARAH domain of Mst1 zinc_ribbon_4 PF13717.6 gi|257386357|ref|YP_003176130.1| - 0.41 10.6 3.1 3.1 7.8 0.2 2.6 3 0 0 3 3 3 0 zinc-ribbon domain Peptidase_M20 PF01546.28 gi|257386358|ref|YP_003176131.1| - 4.3e-30 105.0 4.4 5.5e-30 104.6 4.4 1.1 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|257386358|ref|YP_003176131.1| - 1.4e-14 53.9 0.3 3.3e-14 52.7 0.1 1.7 2 0 0 2 2 2 1 Peptidase dimerisation domain Peptidase_M28 PF04389.17 gi|257386358|ref|YP_003176131.1| - 0.0056 16.4 1.2 0.0089 15.7 1.2 1.4 1 0 0 1 1 1 1 Peptidase family M28 DUF368 PF04018.13 gi|257386359|ref|YP_003176132.1| - 3.7e-62 210.1 18.3 4.7e-62 209.8 18.3 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF368) MFS_1 PF07690.16 gi|257386361|ref|YP_003176134.1| - 7.9e-29 100.7 60.2 4.8e-18 65.2 30.1 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily G_glu_transpept PF01019.21 gi|257386363|ref|YP_003176136.1| - 4.5e-147 490.9 0.0 5.1e-147 490.7 0.0 1.0 1 0 0 1 1 1 1 Gamma-glutamyltranspeptidase PcrB PF01884.17 gi|257386364|ref|YP_003176137.1| - 2e-39 135.3 2.2 3.9e-39 134.4 2.2 1.3 1 1 0 1 1 1 1 PcrB family His_biosynth PF00977.21 gi|257386364|ref|YP_003176137.1| - 3.2e-05 23.5 0.0 6.3e-05 22.6 0.0 1.4 1 0 0 1 1 1 1 Histidine biosynthesis protein NAD_binding_7 PF13241.6 gi|257386364|ref|YP_003176137.1| - 0.049 14.1 0.0 0.12 12.9 0.0 1.6 1 0 0 1 1 1 0 Putative NAD(P)-binding Dus PF01207.17 gi|257386364|ref|YP_003176137.1| - 0.17 11.0 0.0 0.25 10.4 0.0 1.3 1 0 0 1 1 1 0 Dihydrouridine synthase (Dus) Glyoxalase PF00903.25 gi|257386365|ref|YP_003176138.1| - 0.0011 19.1 0.4 0.089 13.0 0.4 2.1 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CppA_N PF14506.6 gi|257386365|ref|YP_003176138.1| - 0.15 12.2 0.0 0.2 11.7 0.0 1.3 1 0 0 1 1 1 0 CppA N-terminal ABC_tran PF00005.27 gi|257386366|ref|YP_003176139.1| - 3.1e-29 102.2 0.0 4.4e-29 101.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|257386366|ref|YP_003176139.1| - 1.8e-12 47.7 0.7 9.8e-06 25.6 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system IstB_IS21 PF01695.17 gi|257386366|ref|YP_003176139.1| - 0.00012 21.9 0.0 0.11 12.2 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein SMC_N PF02463.19 gi|257386366|ref|YP_003176139.1| - 0.00021 20.8 0.0 0.15 11.5 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_25 PF13481.6 gi|257386366|ref|YP_003176139.1| - 0.00048 19.8 0.3 0.0016 18.0 0.2 2.0 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|257386366|ref|YP_003176139.1| - 0.00073 19.2 0.0 0.0013 18.4 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SbcCD_C PF13558.6 gi|257386366|ref|YP_003176139.1| - 0.014 15.6 0.1 0.047 13.9 0.1 1.9 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_23 PF13476.6 gi|257386366|ref|YP_003176139.1| - 0.072 13.6 0.1 0.11 13.0 0.1 1.2 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|257386366|ref|YP_003176139.1| - 0.12 12.3 0.1 0.36 10.7 0.0 1.7 2 0 0 2 2 2 0 RsgA GTPase AAA_18 PF13238.6 gi|257386366|ref|YP_003176139.1| - 0.15 12.6 0.0 3.5 8.2 0.0 2.2 2 0 0 2 2 2 0 AAA domain CbiQ PF02361.16 gi|257386367|ref|YP_003176140.1| - 2.1e-26 92.9 10.5 3.5e-26 92.2 10.5 1.2 1 0 0 1 1 1 1 Cobalt transport protein PDGLE PF13190.6 gi|257386368|ref|YP_003176141.1| - 2.1e-08 33.9 0.8 3.9e-08 33.1 0.8 1.5 1 1 0 1 1 1 1 PDGLE domain CbiM PF01891.16 gi|257386369|ref|YP_003176142.1| - 1.5e-61 207.9 22.9 1.7e-61 207.7 22.9 1.0 1 0 0 1 1 1 1 Cobalt uptake substrate-specific transmembrane region UPF0444 PF15475.6 gi|257386369|ref|YP_003176142.1| - 8.9 6.7 11.2 0.093 13.0 1.4 2.5 2 1 1 3 3 3 0 Transmembrane protein C12orf23, UPF0444 NikR_C PF08753.11 gi|257386370|ref|YP_003176143.1| - 3.4e-25 88.0 8.7 4.9e-25 87.5 8.7 1.2 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.21 gi|257386370|ref|YP_003176143.1| - 1.7e-06 27.8 1.0 2.5e-06 27.2 0.1 1.7 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family Rx_N PF18052.1 gi|257386370|ref|YP_003176143.1| - 0.36 11.1 2.3 16 5.9 2.5 2.4 1 1 0 1 1 1 0 Rx N-terminal domain LrgA PF03788.14 gi|257386371|ref|YP_003176144.1| - 0.019 14.9 0.8 0.033 14.1 0.1 1.7 2 0 0 2 2 2 0 LrgA family T2SSE PF00437.20 gi|257386372|ref|YP_003176145.1| - 2e-10 40.2 0.1 3.5e-10 39.4 0.1 1.3 1 0 0 1 1 1 1 Type II/IV secretion system protein PIN PF01850.21 gi|257386372|ref|YP_003176145.1| - 1.4e-05 25.5 0.0 4.2e-05 24.0 0.0 1.9 1 0 0 1 1 1 1 PIN domain IstB_IS21 PF01695.17 gi|257386372|ref|YP_003176145.1| - 0.0018 18.1 0.0 0.0034 17.1 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_16 PF13191.6 gi|257386372|ref|YP_003176145.1| - 0.0018 18.7 0.1 0.017 15.5 0.0 2.3 2 0 0 2 2 2 1 AAA ATPase domain AAA_33 PF13671.6 gi|257386372|ref|YP_003176145.1| - 0.0029 17.8 0.0 0.017 15.3 0.0 2.0 2 0 0 2 2 2 1 AAA domain Thymidylate_kin PF02223.17 gi|257386372|ref|YP_003176145.1| - 0.0059 16.3 0.1 0.029 14.0 0.0 2.1 2 1 1 3 3 3 1 Thymidylate kinase KH_2 PF07650.17 gi|257386372|ref|YP_003176145.1| - 0.0083 15.9 1.1 0.023 14.5 1.1 1.7 1 0 0 1 1 1 1 KH domain KH_1 PF00013.29 gi|257386372|ref|YP_003176145.1| - 0.0098 15.7 0.0 0.035 13.9 0.0 2.0 1 0 0 1 1 1 1 KH domain AAA_29 PF13555.6 gi|257386372|ref|YP_003176145.1| - 0.017 14.9 0.0 0.042 13.6 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain NTPase_1 PF03266.15 gi|257386372|ref|YP_003176145.1| - 0.032 14.1 0.0 0.074 13.0 0.0 1.6 1 0 0 1 1 1 0 NTPase RuvB_N PF05496.12 gi|257386372|ref|YP_003176145.1| - 0.051 13.3 0.0 0.14 11.9 0.0 1.7 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain AAA_5 PF07728.14 gi|257386372|ref|YP_003176145.1| - 0.052 13.5 0.0 0.12 12.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) ATPase PF06745.13 gi|257386372|ref|YP_003176145.1| - 0.065 12.6 0.0 0.24 10.7 0.0 1.8 2 0 0 2 2 2 0 KaiC AAA_18 PF13238.6 gi|257386372|ref|YP_003176145.1| - 0.096 13.2 0.0 0.21 12.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|257386372|ref|YP_003176145.1| - 0.097 11.9 0.0 0.19 11.0 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin RsgA_GTPase PF03193.16 gi|257386372|ref|YP_003176145.1| - 0.097 12.6 0.0 0.19 11.6 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_22 PF13401.6 gi|257386372|ref|YP_003176145.1| - 0.12 12.6 0.0 0.31 11.3 0.0 1.7 1 0 0 1 1 1 0 AAA domain Big_6 PF17936.1 gi|257386372|ref|YP_003176145.1| - 0.13 12.5 5.1 3.7 7.9 0.2 3.0 3 0 0 3 3 2 0 Bacterial Ig domain AAA_7 PF12775.7 gi|257386372|ref|YP_003176145.1| - 0.14 11.6 0.0 0.23 10.9 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region F420_oxidored PF03807.17 gi|257386374|ref|YP_003176147.1| - 4.6e-20 72.0 0.0 7.8e-20 71.3 0.0 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_Gly3P_dh_N PF01210.23 gi|257386374|ref|YP_003176147.1| - 0.00042 20.3 0.0 0.0007 19.6 0.0 1.4 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.16 gi|257386374|ref|YP_003176147.1| - 0.00057 19.6 0.0 0.00071 19.2 0.0 1.2 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA NAD_binding_2 PF03446.15 gi|257386374|ref|YP_003176147.1| - 0.0012 19.1 0.0 0.0027 17.9 0.0 1.6 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Shikimate_DH PF01488.20 gi|257386374|ref|YP_003176147.1| - 0.027 14.6 0.0 0.049 13.7 0.0 1.4 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Semialdhyde_dh PF01118.24 gi|257386374|ref|YP_003176147.1| - 0.031 14.7 0.0 0.051 14.0 0.0 1.3 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain IlvN PF07991.12 gi|257386374|ref|YP_003176147.1| - 0.032 13.8 0.1 0.1 12.2 0.1 1.8 1 1 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain PDH PF02153.17 gi|257386374|ref|YP_003176147.1| - 0.095 11.7 0.0 0.14 11.1 0.0 1.3 1 0 0 1 1 1 0 Prephenate dehydrogenase Phage_holin_3_6 PF07332.11 gi|257386375|ref|YP_003176148.1| - 0.47 10.5 5.4 0.59 10.2 5.4 1.1 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III DUF4231 PF14015.6 gi|257386375|ref|YP_003176148.1| - 1.8 9.0 3.2 2.3 8.7 3.2 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF4231) Hydrolase PF00702.26 gi|257386376|ref|YP_003176149.1| - 7.3e-10 39.5 2.4 2.5e-09 37.7 2.4 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|257386376|ref|YP_003176149.1| - 7.2e-08 32.7 0.0 4.2e-06 27.0 0.0 2.1 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|257386376|ref|YP_003176149.1| - 3.7e-05 24.2 2.0 0.0032 17.9 0.9 2.2 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase Flagellin_IN PF07196.13 gi|257386376|ref|YP_003176149.1| - 0.031 14.5 0.1 0.069 13.3 0.1 1.6 1 0 0 1 1 1 0 Flagellin hook IN motif UPF0146 PF03686.13 gi|257386377|ref|YP_003176150.1| - 1.1e-30 106.1 0.0 1.2e-30 106.1 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0146) NTP_transf_3 PF12804.7 gi|257386377|ref|YP_003176150.1| - 0.094 13.1 1.7 0.12 12.8 1.7 1.1 1 0 0 1 1 1 0 MobA-like NTP transferase domain Peptidase_M54 PF07998.11 gi|257386378|ref|YP_003176151.1| - 3.9e-22 79.2 0.0 4.7e-22 78.9 0.0 1.2 1 0 0 1 1 1 1 Peptidase family M54 Reprolysin_4 PF13583.6 gi|257386378|ref|YP_003176151.1| - 4.2e-05 23.3 0.0 4.9e-05 23.1 0.0 1.1 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Peptidase_M10 PF00413.24 gi|257386378|ref|YP_003176151.1| - 5e-05 23.2 0.0 5.4e-05 23.1 0.0 1.2 1 0 0 1 1 1 1 Matrixin DUF4953 PF16313.5 gi|257386378|ref|YP_003176151.1| - 0.00024 20.4 0.1 0.00035 19.9 0.1 1.2 1 0 0 1 1 1 1 Met-zincin Reprolysin_3 PF13582.6 gi|257386378|ref|YP_003176151.1| - 0.00028 21.4 0.0 0.00035 21.1 0.0 1.2 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_2 PF13574.6 gi|257386378|ref|YP_003176151.1| - 0.0023 17.9 0.0 0.0024 17.8 0.0 1.2 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_5 PF13688.6 gi|257386378|ref|YP_003176151.1| - 0.005 17.0 0.2 0.0079 16.4 0.2 1.3 1 1 0 1 1 1 1 Metallo-peptidase family M12 Peptidase_M66 PF10462.9 gi|257386378|ref|YP_003176151.1| - 0.022 13.7 0.1 0.028 13.4 0.1 1.1 1 0 0 1 1 1 0 Peptidase M66 Metallopep PF12044.8 gi|257386378|ref|YP_003176151.1| - 0.038 12.6 0.1 0.049 12.2 0.1 1.1 1 0 0 1 1 1 0 Putative peptidase family Zincin_1 PF06262.11 gi|257386378|ref|YP_003176151.1| - 0.045 13.8 0.0 0.08 13.0 0.0 1.4 1 0 0 1 1 1 0 Zincin-like metallopeptidase Peptidase_M57 PF12388.8 gi|257386378|ref|YP_003176151.1| - 0.057 13.0 0.1 0.15 11.7 0.1 1.7 2 0 0 2 2 2 0 Dual-action HEIGH metallo-peptidase Peptidase_M43 PF05572.13 gi|257386378|ref|YP_003176151.1| - 0.17 11.8 0.0 0.24 11.3 0.0 1.3 1 0 0 1 1 1 0 Pregnancy-associated plasma protein-A DUF3072 PF11272.8 gi|257386379|ref|YP_003176152.1| - 0.086 12.8 0.1 16 5.5 0.0 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3072) ABC_tran PF00005.27 gi|257386380|ref|YP_003176153.1| - 5.4e-38 130.6 0.0 7.7e-20 71.8 0.0 2.9 2 1 0 2 2 2 2 ABC transporter SMC_N PF02463.19 gi|257386380|ref|YP_003176153.1| - 8.4e-13 48.3 2.4 0.0021 17.5 0.0 4.3 4 0 0 4 4 4 2 RecF/RecN/SMC N terminal domain RLI PF04068.15 gi|257386380|ref|YP_003176153.1| - 3.2e-12 46.0 0.9 6.7e-12 45.0 0.9 1.5 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI AAA_21 PF13304.6 gi|257386380|ref|YP_003176153.1| - 1.8e-10 41.1 1.7 0.26 11.0 0.0 4.3 3 1 1 4 4 4 4 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|257386380|ref|YP_003176153.1| - 1.1e-07 32.4 0.2 0.018 15.4 0.0 3.3 2 1 1 3 3 3 2 AAA ATPase domain AAA PF00004.29 gi|257386380|ref|YP_003176153.1| - 4.4e-06 27.1 0.0 0.14 12.6 0.0 2.9 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.6 gi|257386380|ref|YP_003176153.1| - 2.7e-05 24.8 0.0 0.14 12.7 0.0 2.5 2 0 0 2 2 2 2 AAA domain RNA_helicase PF00910.22 gi|257386380|ref|YP_003176153.1| - 2.8e-05 24.5 0.0 0.31 11.5 0.0 2.7 2 0 0 2 2 2 2 RNA helicase AAA_22 PF13401.6 gi|257386380|ref|YP_003176153.1| - 3.8e-05 24.0 0.0 0.011 16.1 0.0 2.6 2 0 0 2 2 2 1 AAA domain RuvB_N PF05496.12 gi|257386380|ref|YP_003176153.1| - 9.8e-05 22.1 0.0 0.2 11.4 0.0 2.9 3 0 0 3 3 3 2 Holliday junction DNA helicase RuvB P-loop domain AAA_33 PF13671.6 gi|257386380|ref|YP_003176153.1| - 0.0001 22.5 0.2 0.057 13.6 0.0 3.4 4 1 0 4 4 3 1 AAA domain Rad17 PF03215.15 gi|257386380|ref|YP_003176153.1| - 0.00011 22.1 0.0 0.22 11.4 0.0 2.7 2 1 1 3 3 3 2 Rad17 P-loop domain AAA_24 PF13479.6 gi|257386380|ref|YP_003176153.1| - 0.00015 21.5 0.0 0.12 12.0 0.0 2.4 2 0 0 2 2 2 2 AAA domain Fer4 PF00037.27 gi|257386380|ref|YP_003176153.1| - 0.0003 20.5 1.4 0.0003 20.5 1.4 2.9 3 0 0 3 3 3 1 4Fe-4S binding domain AAA_18 PF13238.6 gi|257386380|ref|YP_003176153.1| - 0.00041 20.9 0.0 1.8 9.1 0.0 2.8 2 0 0 2 2 2 2 AAA domain Fer4_6 PF12837.7 gi|257386380|ref|YP_003176153.1| - 0.0005 20.0 11.9 0.009 16.1 1.7 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain RsgA_GTPase PF03193.16 gi|257386380|ref|YP_003176153.1| - 0.00066 19.6 0.0 0.46 10.4 0.0 2.3 2 0 0 2 2 2 1 RsgA GTPase NB-ARC PF00931.22 gi|257386380|ref|YP_003176153.1| - 0.00086 18.6 0.0 0.86 8.7 0.0 2.2 2 0 0 2 2 2 2 NB-ARC domain NACHT PF05729.12 gi|257386380|ref|YP_003176153.1| - 0.001 19.0 0.1 2 8.3 0.0 2.6 2 0 0 2 2 2 2 NACHT domain AAA_29 PF13555.6 gi|257386380|ref|YP_003176153.1| - 0.0021 17.7 0.1 3.2 7.5 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|257386380|ref|YP_003176153.1| - 0.0024 17.7 0.0 1.1 8.9 0.0 2.8 3 0 0 3 3 3 1 AAA ATPase domain AAA_14 PF13173.6 gi|257386380|ref|YP_003176153.1| - 0.0025 17.9 0.0 4.4 7.3 0.0 3.1 3 0 0 3 3 3 1 AAA domain Fer4_10 PF13237.6 gi|257386380|ref|YP_003176153.1| - 0.0041 17.2 10.4 0.14 12.3 12.4 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain AAA_28 PF13521.6 gi|257386380|ref|YP_003176153.1| - 0.013 15.7 0.1 3.7 7.8 0.0 3.0 3 0 0 3 3 3 0 AAA domain Fer4_2 PF12797.7 gi|257386380|ref|YP_003176153.1| - 0.015 15.4 0.8 0.015 15.4 0.8 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain SRP54 PF00448.22 gi|257386380|ref|YP_003176153.1| - 0.016 14.8 0.0 2.9 7.5 0.0 2.4 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_5 PF07728.14 gi|257386380|ref|YP_003176153.1| - 0.017 15.2 0.1 2.7 8.0 0.0 3.1 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) NTPase_1 PF03266.15 gi|257386380|ref|YP_003176153.1| - 0.027 14.4 1.0 9 6.2 0.1 3.0 3 0 0 3 3 3 0 NTPase AAA_25 PF13481.6 gi|257386380|ref|YP_003176153.1| - 0.029 13.9 3.3 11 5.6 0.2 3.6 3 1 0 3 3 3 0 AAA domain Thymidylate_kin PF02223.17 gi|257386380|ref|YP_003176153.1| - 0.065 12.9 0.0 10 5.7 0.0 2.4 2 0 0 2 2 2 0 Thymidylate kinase SbcCD_C PF13558.6 gi|257386380|ref|YP_003176153.1| - 0.084 13.1 0.0 28 5.0 0.1 2.9 2 1 0 2 2 2 0 Putative exonuclease SbcCD, C subunit DUF87 PF01935.17 gi|257386380|ref|YP_003176153.1| - 0.088 12.9 0.2 13 5.8 0.0 2.5 2 0 0 2 2 2 0 Helicase HerA, central domain Fer4_9 PF13187.6 gi|257386380|ref|YP_003176153.1| - 0.094 12.9 9.4 0.19 11.9 9.4 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain CLP1_P PF16575.5 gi|257386380|ref|YP_003176153.1| - 0.12 12.2 0.0 2 8.2 0.0 2.4 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop AAA_30 PF13604.6 gi|257386380|ref|YP_003176153.1| - 0.12 12.1 0.1 11 5.7 0.0 2.8 2 0 0 2 2 2 0 AAA domain Fer4_21 PF14697.6 gi|257386380|ref|YP_003176153.1| - 0.52 10.5 7.6 1 9.6 7.6 1.5 1 0 0 1 1 1 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|257386380|ref|YP_003176153.1| - 1.2 10.1 8.8 3.6 8.6 8.8 1.9 1 1 0 1 1 1 0 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 gi|257386380|ref|YP_003176153.1| - 1.3 9.7 9.9 7.1 7.3 10.3 2.0 1 1 1 2 2 2 0 4Fe-4S dicluster domain HTH_27 PF13463.6 gi|257386382|ref|YP_003176155.1| - 0.00025 21.5 0.0 0.00032 21.1 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_24 PF13412.6 gi|257386382|ref|YP_003176155.1| - 0.00073 19.0 0.0 0.001 18.6 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|257386382|ref|YP_003176155.1| - 0.0024 17.7 0.1 0.0031 17.4 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_12 PF08461.10 gi|257386382|ref|YP_003176155.1| - 0.0049 16.8 0.1 0.011 15.6 0.1 1.7 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain MarR_2 PF12802.7 gi|257386382|ref|YP_003176155.1| - 0.017 15.0 0.0 0.024 14.5 0.0 1.4 1 0 0 1 1 1 0 MarR family HxlR PF01638.17 gi|257386382|ref|YP_003176155.1| - 0.024 14.5 0.0 0.031 14.1 0.0 1.3 1 0 0 1 1 1 0 HxlR-like helix-turn-helix PadR PF03551.14 gi|257386382|ref|YP_003176155.1| - 0.036 14.0 0.0 0.11 12.4 0.0 1.7 1 1 1 2 2 2 0 Transcriptional regulator PadR-like family HTH_11 PF08279.12 gi|257386382|ref|YP_003176155.1| - 0.038 13.9 0.0 0.054 13.5 0.0 1.2 1 0 0 1 1 1 0 HTH domain GntR PF00392.21 gi|257386382|ref|YP_003176155.1| - 0.055 13.1 0.1 0.078 12.6 0.1 1.2 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family PaaX PF07848.12 gi|257386382|ref|YP_003176155.1| - 0.099 12.9 0.0 0.14 12.4 0.0 1.3 1 0 0 1 1 1 0 PaaX-like protein HTH_45 PF14947.6 gi|257386382|ref|YP_003176155.1| - 0.12 12.4 0.0 0.18 11.8 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix Thioredoxin PF00085.20 gi|257386383|ref|YP_003176156.1| - 1.6e-20 73.0 0.0 1.9e-20 72.8 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|257386383|ref|YP_003176156.1| - 1.1e-07 32.3 0.4 3e-06 27.7 0.4 2.0 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_8 PF13905.6 gi|257386383|ref|YP_003176156.1| - 4.4e-05 23.7 0.1 0.14 12.5 0.0 2.1 1 1 1 2 2 2 2 Thioredoxin-like Thioredoxin_9 PF14595.6 gi|257386383|ref|YP_003176156.1| - 0.00022 21.0 0.0 0.00025 20.8 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Glutaredoxin PF00462.24 gi|257386383|ref|YP_003176156.1| - 0.00032 20.9 0.1 0.0011 19.1 0.0 1.8 1 1 1 2 2 2 1 Glutaredoxin Thioredoxin_3 PF13192.6 gi|257386383|ref|YP_003176156.1| - 0.00034 20.6 0.0 0.00041 20.3 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin domain DSBA PF01323.20 gi|257386383|ref|YP_003176156.1| - 0.0011 18.8 0.1 0.1 12.4 0.0 2.0 1 1 1 2 2 2 2 DSBA-like thioredoxin domain Redoxin PF08534.10 gi|257386383|ref|YP_003176156.1| - 0.0017 18.0 0.3 0.14 11.8 0.1 2.0 1 1 1 2 2 2 2 Redoxin AhpC-TSA PF00578.21 gi|257386383|ref|YP_003176156.1| - 0.0041 17.0 0.3 2.7 7.9 0.0 2.0 1 1 1 2 2 2 2 AhpC/TSA family DUF836 PF05768.14 gi|257386383|ref|YP_003176156.1| - 0.009 16.4 0.1 0.011 16.1 0.1 1.1 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) TraF PF13728.6 gi|257386383|ref|YP_003176156.1| - 0.0093 15.8 0.0 0.01 15.7 0.0 1.1 1 0 0 1 1 1 1 F plasmid transfer operon protein Thioredoxin_5 PF13743.6 gi|257386383|ref|YP_003176156.1| - 0.023 14.4 0.1 0.025 14.3 0.1 1.1 1 0 0 1 1 1 0 Thioredoxin Sec61_beta PF03911.16 gi|257386384|ref|YP_003176157.1| - 2.2e-16 59.6 0.1 3e-16 59.2 0.1 1.2 1 0 0 1 1 1 1 Sec61beta family DotU PF09850.9 gi|257386385|ref|YP_003176158.1| - 0.036 13.8 0.4 0.041 13.6 0.4 1.2 1 0 0 1 1 1 0 Type VI secretion system protein DotU DUF4331 PF14224.6 gi|257386385|ref|YP_003176158.1| - 0.12 11.5 0.0 0.29 10.3 0.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4331) DUF402 PF04167.13 gi|257386386|ref|YP_003176159.1| - 9.7e-15 54.5 2.0 1.9e-14 53.6 2.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF402) S1 PF00575.23 gi|257386386|ref|YP_003176159.1| - 0.015 15.6 0.1 0.053 13.9 0.1 2.0 1 1 0 1 1 1 0 S1 RNA binding domain LVIVD PF08309.11 gi|257386387|ref|YP_003176160.1| - 4e-13 48.4 0.0 6.4e-05 22.2 0.0 3.9 4 0 0 4 4 4 3 LVIVD repeat Beta_propel PF09826.9 gi|257386387|ref|YP_003176160.1| - 0.091 11.6 0.0 4.5 6.0 0.0 2.7 2 1 0 2 2 2 0 Beta propeller domain LOR PF04525.12 gi|257386388|ref|YP_003176161.1| - 4.8e-07 29.5 0.1 0.00056 19.6 0.3 2.9 2 1 1 3 3 3 3 LURP-one-related DUF2188 PF09954.9 gi|257386388|ref|YP_003176161.1| - 0.0091 16.1 0.0 0.036 14.2 0.0 2.0 2 0 0 2 2 2 1 Uncharacterized protein conserved in bacteria (DUF2188) UvrA_inter PF17760.1 gi|257386389|ref|YP_003176162.1| - 4e-33 113.7 0.0 1.3e-32 112.1 0.0 2.0 1 0 0 1 1 1 1 UvrA interaction domain UvrA_DNA-bind PF17755.1 gi|257386389|ref|YP_003176162.1| - 3.3e-29 101.4 0.2 1e-26 93.5 0.1 3.4 3 0 0 3 3 3 1 UvrA DNA-binding domain ABC_tran PF00005.27 gi|257386389|ref|YP_003176162.1| - 7.5e-20 71.8 0.0 6.9e-09 36.3 0.0 4.3 3 1 0 3 3 3 3 ABC transporter SMC_N PF02463.19 gi|257386389|ref|YP_003176162.1| - 1.6e-11 44.0 0.0 0.16 11.4 0.0 4.2 4 0 0 4 4 4 4 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|257386389|ref|YP_003176162.1| - 3e-08 33.3 0.0 0.0042 16.8 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|257386389|ref|YP_003176162.1| - 8.1e-07 29.6 0.2 0.011 16.1 0.0 3.4 4 0 0 4 4 3 2 AAA ATPase domain AAA_21 PF13304.6 gi|257386389|ref|YP_003176162.1| - 2e-05 24.6 9.7 0.015 15.1 0.1 4.3 4 0 0 4 4 4 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|257386389|ref|YP_003176162.1| - 2.7e-05 24.1 0.1 0.043 13.5 0.0 3.9 4 0 0 4 4 4 1 AAA ATPase domain AAA_23 PF13476.6 gi|257386389|ref|YP_003176162.1| - 4e-05 24.2 0.0 0.037 14.5 0.0 2.6 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|257386389|ref|YP_003176162.1| - 4.8e-05 23.7 0.1 0.55 10.5 0.0 3.1 3 0 0 3 3 2 2 AAA domain RsgA_GTPase PF03193.16 gi|257386389|ref|YP_003176162.1| - 0.00015 21.7 0.0 0.64 9.9 0.0 2.4 2 0 0 2 2 2 2 RsgA GTPase DnaJ_CXXCXGXG PF00684.19 gi|257386389|ref|YP_003176162.1| - 0.00022 21.5 13.1 0.02 15.2 0.8 4.0 4 1 0 4 4 3 1 DnaJ central domain AAA_33 PF13671.6 gi|257386389|ref|YP_003176162.1| - 0.00078 19.6 0.0 1.9 8.6 0.0 3.1 3 0 0 3 3 3 2 AAA domain ATPase PF06745.13 gi|257386389|ref|YP_003176162.1| - 0.0013 18.2 0.0 0.58 9.5 0.0 2.7 2 0 0 2 2 2 1 KaiC AAA_14 PF13173.6 gi|257386389|ref|YP_003176162.1| - 0.0014 18.7 0.0 2.6 8.1 0.0 3.9 4 0 0 4 4 4 1 AAA domain AAA_25 PF13481.6 gi|257386389|ref|YP_003176162.1| - 0.0026 17.4 0.0 0.98 9.0 0.0 2.9 2 0 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|257386389|ref|YP_003176162.1| - 0.0027 18.2 0.0 2.8 8.5 0.0 2.9 2 0 0 2 2 2 1 AAA domain APS_kinase PF01583.20 gi|257386389|ref|YP_003176162.1| - 0.0033 17.3 0.1 3.5 7.5 0.0 2.7 2 0 0 2 2 2 2 Adenylylsulphate kinase HypA PF01155.19 gi|257386389|ref|YP_003176162.1| - 0.0037 17.3 4.0 1.2 9.1 0.2 4.1 4 0 0 4 4 4 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA cobW PF02492.19 gi|257386389|ref|YP_003176162.1| - 0.011 15.3 0.1 1.4 8.5 0.0 2.4 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain Zn-ribbon_8 PF09723.10 gi|257386389|ref|YP_003176162.1| - 0.012 15.7 15.5 2 8.6 1.3 4.6 4 0 0 4 4 4 0 Zinc ribbon domain DUF2075 PF09848.9 gi|257386389|ref|YP_003176162.1| - 0.018 14.3 0.0 2.8 7.1 0.0 2.3 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) BCA_ABC_TP_C PF12399.8 gi|257386389|ref|YP_003176162.1| - 0.019 14.8 0.7 0.11 12.5 0.3 2.4 2 0 0 2 2 2 0 Branched-chain amino acid ATP-binding cassette transporter NACHT PF05729.12 gi|257386389|ref|YP_003176162.1| - 0.023 14.6 0.0 1.9 8.4 0.0 2.4 2 0 0 2 2 2 0 NACHT domain Viral_helicase1 PF01443.18 gi|257386389|ref|YP_003176162.1| - 0.034 13.9 0.0 1.7 8.3 0.0 2.4 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase AAA_30 PF13604.6 gi|257386389|ref|YP_003176162.1| - 0.1 12.3 0.1 7.8 6.2 0.1 2.6 2 0 0 2 2 2 0 AAA domain ATPase_2 PF01637.18 gi|257386389|ref|YP_003176162.1| - 0.14 12.1 0.0 18 5.1 0.0 2.4 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea AAA_24 PF13479.6 gi|257386389|ref|YP_003176162.1| - 0.16 11.6 0.0 12 5.5 0.0 3.0 3 0 0 3 3 3 0 AAA domain NB-ARC PF00931.22 gi|257386389|ref|YP_003176162.1| - 0.18 11.0 0.0 1.5 7.9 0.0 2.2 2 0 0 2 2 2 0 NB-ARC domain DZR PF12773.7 gi|257386389|ref|YP_003176162.1| - 0.34 11.0 8.0 6.6 6.8 0.3 4.0 4 0 0 4 4 4 0 Double zinc ribbon Zn_Tnp_IS91 PF14319.6 gi|257386389|ref|YP_003176162.1| - 0.4 10.8 5.6 2.8 8.0 0.0 3.2 4 0 0 4 4 2 0 Transposase zinc-binding domain MFS_1 PF07690.16 gi|257386390|ref|YP_003176163.1| - 4.6e-41 140.9 74.0 1e-36 126.6 44.7 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily LacY_symp PF01306.19 gi|257386390|ref|YP_003176163.1| - 0.0014 17.5 7.7 0.0058 15.4 0.6 2.3 1 1 1 2 2 2 2 LacY proton/sugar symporter OATP PF03137.20 gi|257386390|ref|YP_003176163.1| - 0.0094 14.3 0.5 0.0094 14.3 0.5 2.2 2 1 1 3 3 3 1 Organic Anion Transporter Polypeptide (OATP) family MFS_1_like PF12832.7 gi|257386390|ref|YP_003176163.1| - 0.012 14.5 15.1 0.0071 15.3 4.2 2.6 1 1 2 3 3 3 0 MFS_1 like family AP_endonuc_2 PF01261.24 gi|257386391|ref|YP_003176164.1| - 2.1e-16 60.0 1.2 3.7e-16 59.2 1.2 1.3 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel MR_MLE_C PF13378.6 gi|257386392|ref|YP_003176165.1| - 1.1e-61 208.2 0.8 2e-61 207.4 0.8 1.4 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|257386392|ref|YP_003176165.1| - 4.5e-19 68.8 0.0 9.2e-19 67.8 0.0 1.5 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Enolase_N PF03952.16 gi|257386392|ref|YP_003176165.1| - 0.0047 17.1 0.0 0.0098 16.1 0.0 1.5 1 0 0 1 1 1 1 Enolase, N-terminal domain GFO_IDH_MocA PF01408.22 gi|257386393|ref|YP_003176166.1| - 1.3e-23 84.1 0.1 2.2e-23 83.3 0.1 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold F420_oxidored PF03807.17 gi|257386393|ref|YP_003176166.1| - 0.022 15.3 0.0 0.072 13.7 0.0 1.9 1 1 1 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent HpcH_HpaI PF03328.14 gi|257386394|ref|YP_003176167.1| - 1.3e-43 148.8 1.4 1.5e-43 148.5 1.4 1.0 1 0 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family Aldedh PF00171.22 gi|257386395|ref|YP_003176168.1| - 2.3e-139 464.9 0.1 2.7e-139 464.7 0.1 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family TPP_enzyme_N PF02776.18 gi|257386396|ref|YP_003176169.1| - 4.1e-59 199.0 0.2 5.9e-58 195.3 0.2 2.2 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|257386396|ref|YP_003176169.1| - 5.9e-44 149.1 0.0 1e-43 148.4 0.0 1.4 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain TPP_enzyme_C PF02775.21 gi|257386396|ref|YP_003176169.1| - 7.9e-37 126.4 0.0 3.4e-35 121.1 0.0 2.4 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PNTB PF02233.16 gi|257386396|ref|YP_003176169.1| - 0.0042 16.1 0.0 0.0066 15.4 0.0 1.2 1 0 0 1 1 1 1 NAD(P) transhydrogenase beta subunit Bac_luciferase PF00296.20 gi|257386397|ref|YP_003176170.1| - 5.2e-51 173.9 8.2 6.4e-51 173.6 8.2 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase IclR PF01614.18 gi|257386398|ref|YP_003176171.1| - 5.1e-32 110.4 0.0 7.9e-32 109.8 0.0 1.3 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|257386398|ref|YP_003176171.1| - 6.4e-07 29.1 0.0 2e-06 27.5 0.0 1.9 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|257386398|ref|YP_003176171.1| - 8.8e-05 22.0 0.0 0.00021 20.8 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_34 PF13601.6 gi|257386398|ref|YP_003176171.1| - 0.0032 17.6 0.0 0.0068 16.6 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_5 PF01022.20 gi|257386398|ref|YP_003176171.1| - 0.0039 17.0 0.0 0.0092 15.8 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_40 PF14493.6 gi|257386398|ref|YP_003176171.1| - 0.015 15.7 0.0 0.033 14.6 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_20 PF12840.7 gi|257386398|ref|YP_003176171.1| - 0.044 13.8 0.0 0.11 12.6 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_11 PF08279.12 gi|257386398|ref|YP_003176171.1| - 0.057 13.4 0.0 0.23 11.5 0.0 2.0 2 0 0 2 2 2 0 HTH domain TrmB PF01978.19 gi|257386398|ref|YP_003176171.1| - 0.076 12.9 0.0 0.5 10.3 0.0 2.4 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_45 PF14947.6 gi|257386398|ref|YP_003176171.1| - 0.1 12.6 0.0 0.19 11.7 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix MarR PF01047.22 gi|257386398|ref|YP_003176171.1| - 0.12 12.3 0.0 0.28 11.1 0.0 1.5 1 0 0 1 1 1 0 MarR family Soyouz_module PF14313.6 gi|257386398|ref|YP_003176171.1| - 0.14 11.9 0.5 4.9 7.0 0.1 2.6 2 1 0 2 2 2 0 N-terminal region of Paramyxovirinae phosphoprotein (P) GDPD PF03009.17 gi|257386399|ref|YP_003176172.1| - 1.7e-38 132.9 0.1 1.4e-36 126.6 0.1 2.0 1 1 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family GDPD_2 PF13653.6 gi|257386399|ref|YP_003176172.1| - 0.00021 21.6 0.3 0.00053 20.4 0.3 1.7 1 0 0 1 1 1 1 Glycerophosphoryl diester phosphodiesterase family ThiG PF05690.14 gi|257386399|ref|YP_003176172.1| - 0.061 12.6 0.0 0.12 11.6 0.0 1.4 1 0 0 1 1 1 0 Thiazole biosynthesis protein ThiG ABC_tran PF00005.27 gi|257386400|ref|YP_003176173.1| - 5.2e-32 111.2 0.0 8.2e-32 110.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 gi|257386400|ref|YP_003176173.1| - 1.9e-11 44.0 0.2 1.5e-10 41.1 0.0 2.2 2 0 0 2 2 2 1 TOBE domain OB_MalK PF17912.1 gi|257386400|ref|YP_003176173.1| - 4.6e-10 40.2 0.0 1.6e-09 38.5 0.0 2.0 1 0 0 1 1 1 1 MalK OB fold domain AAA_21 PF13304.6 gi|257386400|ref|YP_003176173.1| - 1.1e-06 28.7 0.1 0.012 15.4 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system CysA_C_terminal PF17850.1 gi|257386400|ref|YP_003176173.1| - 2.8e-05 24.6 0.2 0.00018 22.0 0.1 2.4 2 0 0 2 2 2 1 CysA C-terminal regulatory domain TOBE PF03459.17 gi|257386400|ref|YP_003176173.1| - 9.5e-05 22.6 0.1 0.00026 21.2 0.0 1.8 2 0 0 2 2 1 1 TOBE domain Rad17 PF03215.15 gi|257386400|ref|YP_003176173.1| - 0.00013 21.9 0.0 0.0002 21.3 0.0 1.2 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_16 PF13191.6 gi|257386400|ref|YP_003176173.1| - 0.00058 20.3 0.2 0.0015 19.0 0.2 1.9 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|257386400|ref|YP_003176173.1| - 0.0006 20.1 0.1 0.0014 19.0 0.1 1.7 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|257386400|ref|YP_003176173.1| - 0.0015 18.0 0.0 0.0039 16.7 0.0 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|257386400|ref|YP_003176173.1| - 0.0064 16.4 0.0 0.012 15.5 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA_30 PF13604.6 gi|257386400|ref|YP_003176173.1| - 0.04 13.6 0.0 0.068 12.9 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|257386400|ref|YP_003176173.1| - 0.053 13.2 0.0 0.075 12.7 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain AAA PF00004.29 gi|257386400|ref|YP_003176173.1| - 0.06 13.8 0.0 0.13 12.6 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 gi|257386400|ref|YP_003176173.1| - 0.081 13.1 0.1 0.19 11.9 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|257386400|ref|YP_003176173.1| - 0.084 12.6 0.0 0.16 11.7 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Cytidylate_kin PF02224.18 gi|257386400|ref|YP_003176173.1| - 0.11 12.2 0.2 0.33 10.6 0.2 1.7 1 1 0 1 1 1 0 Cytidylate kinase AAA_5 PF07728.14 gi|257386400|ref|YP_003176173.1| - 0.16 12.0 0.1 0.47 10.4 0.1 1.8 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) RNA_helicase PF00910.22 gi|257386400|ref|YP_003176173.1| - 0.24 11.8 0.3 0.88 10.0 0.1 1.9 1 1 1 2 2 2 0 RNA helicase AAA_23 PF13476.6 gi|257386400|ref|YP_003176173.1| - 0.24 11.8 0.0 0.47 10.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain BPD_transp_1 PF00528.22 gi|257386401|ref|YP_003176174.1| - 4.2e-15 56.0 17.2 4.2e-15 56.0 17.2 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component DDE_Tnp_IS66_C PF13817.6 gi|257386401|ref|YP_003176174.1| - 0.049 13.9 0.0 0.11 12.7 0.0 1.6 1 0 0 1 1 1 0 IS66 C-terminal element BPD_transp_1 PF00528.22 gi|257386402|ref|YP_003176175.1| - 3.1e-12 46.6 15.0 3.1e-12 46.6 15.0 2.5 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_8 PF13416.6 gi|257386403|ref|YP_003176176.1| - 1.2e-41 143.4 2.8 1.5e-41 143.1 2.8 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|257386403|ref|YP_003176176.1| - 6.1e-26 92.1 2.8 8.3e-26 91.7 2.8 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|257386403|ref|YP_003176176.1| - 0.00012 21.6 0.0 0.019 14.4 0.0 2.2 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|257386403|ref|YP_003176176.1| - 0.0019 18.0 0.1 0.033 13.9 0.0 2.3 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein DUF4010 PF13194.6 gi|257386404|ref|YP_003176177.1| - 4.1e-49 167.1 23.9 4.1e-49 167.1 23.9 2.9 3 1 0 3 3 3 1 Domain of unknown function (DUF4010) MgtC PF02308.16 gi|257386404|ref|YP_003176177.1| - 2.9e-21 76.1 12.4 2.9e-21 76.1 12.4 3.4 2 1 0 2 2 2 1 MgtC family AAA_16 PF13191.6 gi|257386405|ref|YP_003176178.1| - 1.5e-07 32.0 4.0 8.6e-07 29.5 0.0 2.8 2 2 1 3 3 3 1 AAA ATPase domain AAA_22 PF13401.6 gi|257386405|ref|YP_003176178.1| - 6e-05 23.3 0.0 0.00014 22.1 0.0 1.7 1 0 0 1 1 1 1 AAA domain HTH_32 PF13565.6 gi|257386405|ref|YP_003176178.1| - 0.0016 19.0 0.6 0.7 10.6 0.0 3.4 4 0 0 4 4 4 1 Homeodomain-like domain HTH_DeoR PF08220.12 gi|257386405|ref|YP_003176178.1| - 0.0048 16.6 0.1 0.02 14.7 0.3 1.8 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain DUF815 PF05673.13 gi|257386405|ref|YP_003176178.1| - 0.0093 15.2 0.0 0.017 14.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) HTH_12 PF08461.10 gi|257386405|ref|YP_003176178.1| - 0.024 14.5 0.0 0.068 13.1 0.0 1.7 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain AAA_assoc_2 PF16193.5 gi|257386405|ref|YP_003176178.1| - 0.04 14.3 0.2 0.094 13.1 0.2 1.6 1 0 0 1 1 1 0 AAA C-terminal domain RP-C PF03428.13 gi|257386405|ref|YP_003176178.1| - 0.11 12.2 0.1 0.19 11.4 0.1 1.4 1 0 0 1 1 1 0 Replication protein C N-terminal domain EamA PF00892.20 gi|257386406|ref|YP_003176179.1| - 3.4e-14 53.2 16.5 4e-14 52.9 16.5 1.0 1 0 0 1 1 1 1 EamA-like transporter family TMEM234 PF10639.9 gi|257386406|ref|YP_003176179.1| - 0.0038 17.3 2.1 0.0059 16.6 2.1 1.4 1 0 0 1 1 1 1 Putative transmembrane family 234 DUF5516 PF17637.2 gi|257386406|ref|YP_003176179.1| - 0.061 13.1 3.6 0.47 10.2 0.1 2.7 2 0 0 2 2 2 0 Family of unknown function (DUF5516) AhpC-TSA PF00578.21 gi|257386407|ref|YP_003176180.1| - 3.4e-16 59.3 0.0 5.1e-16 58.7 0.0 1.3 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|257386407|ref|YP_003176180.1| - 6.9e-10 38.8 0.0 1e-09 38.2 0.0 1.2 1 0 0 1 1 1 1 Redoxin HemY_N PF07219.13 gi|257386407|ref|YP_003176180.1| - 0.048 13.9 1.2 0.13 12.5 0.0 2.0 2 0 0 2 2 2 0 HemY protein N-terminus MOSC_N PF03476.16 gi|257386408|ref|YP_003176181.1| - 3.3e-15 56.0 0.6 6.3e-15 55.1 0.6 1.5 1 1 0 1 1 1 1 MOSC N-terminal beta barrel domain MOSC PF03473.17 gi|257386408|ref|YP_003176181.1| - 4e-06 26.9 0.0 9.7e-06 25.6 0.0 1.7 1 0 0 1 1 1 1 MOSC domain CSD PF00313.22 gi|257386410|ref|YP_003176183.1| - 5.4e-20 71.0 0.3 5.9e-20 70.9 0.3 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain OB_RNB PF08206.11 gi|257386410|ref|YP_003176183.1| - 0.04 13.6 2.5 0.06 13.0 2.5 1.4 1 0 0 1 1 1 0 Ribonuclease B OB domain S1-like PF14444.6 gi|257386410|ref|YP_003176183.1| - 0.058 13.3 1.1 0.087 12.8 1.1 1.4 1 1 0 1 1 1 0 S1-like Bac_luciferase PF00296.20 gi|257386412|ref|YP_003176185.1| - 4.8e-61 206.9 14.2 5.8e-61 206.6 14.2 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase F420_ligase PF01996.16 gi|257386413|ref|YP_003176186.1| - 5.7e-55 186.3 0.0 7e-55 186.0 0.0 1.0 1 0 0 1 1 1 1 F420-0:Gamma-glutamyl ligase ACC_epsilon PF13822.6 gi|257386414|ref|YP_003176187.1| - 0.0096 16.6 3.0 0.0096 16.6 3.0 1.9 2 0 0 2 2 2 1 Acyl-CoA carboxylase epsilon subunit HTH_20 PF12840.7 gi|257386415|ref|YP_003176188.1| - 8.9e-09 35.3 0.0 3.3e-07 30.3 0.0 2.5 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|257386415|ref|YP_003176188.1| - 0.013 15.4 0.0 0.03 14.2 0.0 1.6 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family Lar_restr_allev PF14354.6 gi|257386415|ref|YP_003176188.1| - 2.5 8.5 6.1 0.28 11.6 0.5 2.1 2 1 0 2 2 2 0 Restriction alleviation protein Lar Metallophos_2 PF12850.7 gi|257386416|ref|YP_003176189.1| - 2.1e-30 106.1 0.3 2.5e-30 105.9 0.3 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|257386416|ref|YP_003176189.1| - 0.00038 21.0 0.3 0.094 13.2 0.0 2.1 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase MARVEL PF01284.23 gi|257386417|ref|YP_003176190.1| - 0.04 14.0 10.5 0.049 13.7 10.5 1.1 1 0 0 1 1 1 0 Membrane-associating domain NosL PF05573.12 gi|257386418|ref|YP_003176191.1| - 2.3e-40 137.9 0.1 2.7e-40 137.7 0.1 1.0 1 0 0 1 1 1 1 NosL VATC PF18716.1 gi|257386418|ref|YP_003176191.1| - 0.72 9.7 3.3 2.5 8.0 1.2 2.2 2 0 0 2 2 2 0 Vms1-associating treble clef domain MLTD_N PF06474.12 gi|257386418|ref|YP_003176191.1| - 1.6 9.0 5.7 0.49 10.6 2.9 1.6 2 0 0 2 2 2 0 MltD lipid attachment motif HTH_24 PF13412.6 gi|257386419|ref|YP_003176192.1| - 1.4e-14 53.4 0.0 2.5e-07 30.1 0.0 2.4 2 0 0 2 2 2 2 Winged helix-turn-helix DNA-binding HTH_20 PF12840.7 gi|257386419|ref|YP_003176192.1| - 3.3e-12 46.3 0.4 1.3e-05 25.2 0.2 2.4 2 0 0 2 2 2 2 Helix-turn-helix domain MarR_2 PF12802.7 gi|257386419|ref|YP_003176192.1| - 7.5e-10 38.6 2.1 0.00029 20.6 0.2 2.7 3 0 0 3 3 3 2 MarR family HTH_5 PF01022.20 gi|257386419|ref|YP_003176192.1| - 3.1e-09 36.5 0.0 4.3e-05 23.3 0.0 2.2 2 0 0 2 2 2 2 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|257386419|ref|YP_003176192.1| - 3.1e-07 30.2 0.0 0.0013 18.6 0.0 2.2 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|257386419|ref|YP_003176192.1| - 8.8e-06 25.4 0.3 0.021 14.6 0.0 3.1 3 0 0 3 3 3 2 IclR helix-turn-helix domain HTH_27 PF13463.6 gi|257386419|ref|YP_003176192.1| - 0.00081 19.8 0.3 1.6 9.3 0.0 2.5 1 1 1 2 2 2 2 Winged helix DNA-binding domain MarR PF01047.22 gi|257386419|ref|YP_003176192.1| - 0.0026 17.7 0.0 1.3 9.0 0.0 2.5 2 0 0 2 2 2 2 MarR family RP-C PF03428.13 gi|257386419|ref|YP_003176192.1| - 0.0079 15.9 0.1 2.6 7.7 0.0 2.3 2 0 0 2 2 2 2 Replication protein C N-terminal domain HTH_34 PF13601.6 gi|257386419|ref|YP_003176192.1| - 0.02 15.1 0.0 1.2 9.4 0.0 2.2 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_11 PF08279.12 gi|257386419|ref|YP_003176192.1| - 0.039 13.9 0.0 0.13 12.2 0.0 1.9 2 0 0 2 2 2 0 HTH domain HTH_10 PF04967.12 gi|257386419|ref|YP_003176192.1| - 0.048 13.5 0.0 2.3 8.1 0.0 2.4 2 0 0 2 2 2 0 HTH DNA binding domain Rrf2 PF02082.20 gi|257386419|ref|YP_003176192.1| - 0.054 13.9 0.1 1.2 9.5 0.0 2.1 2 0 0 2 2 2 0 Transcriptional regulator Fe_dep_repress PF01325.19 gi|257386419|ref|YP_003176192.1| - 0.096 12.9 0.0 5.1 7.4 0.0 2.3 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain TGase_elicitor PF16683.5 gi|257386419|ref|YP_003176192.1| - 0.16 10.7 0.0 0.21 10.3 0.0 1.2 1 0 0 1 1 1 0 Transglutaminase elicitor ABC2_membrane_2 PF12679.7 gi|257386420|ref|YP_003176193.1| - 8.8e-05 21.9 23.3 0.00024 20.5 17.9 2.2 1 1 1 2 2 2 2 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|257386420|ref|YP_003176193.1| - 0.048 12.8 4.6 0.061 12.4 4.6 1.3 1 0 0 1 1 1 0 ABC-2 family transporter protein HrcA_DNA-bdg PF03444.15 gi|257386420|ref|YP_003176193.1| - 0.15 11.8 0.0 0.34 10.6 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Claudin_2 PF13903.6 gi|257386420|ref|YP_003176193.1| - 8.7 6.0 13.2 0.13 12.0 5.8 1.8 2 1 0 2 2 2 0 PMP-22/EMP/MP20/Claudin tight junction ABC_tran PF00005.27 gi|257386421|ref|YP_003176194.1| - 3.7e-27 95.5 0.0 4.8e-27 95.2 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|257386421|ref|YP_003176194.1| - 9.5e-21 74.9 0.1 7e-11 42.5 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|257386421|ref|YP_003176194.1| - 3.2e-07 30.0 0.0 0.0009 18.7 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|257386421|ref|YP_003176194.1| - 1.4e-06 27.9 0.3 2.7e-06 27.0 0.3 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|257386421|ref|YP_003176194.1| - 3.6e-06 27.6 0.0 4.9e-06 27.2 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|257386421|ref|YP_003176194.1| - 6.1e-05 23.5 0.1 9.6e-05 22.8 0.1 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.6 gi|257386421|ref|YP_003176194.1| - 6.4e-05 22.8 0.0 0.00065 19.5 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain cobW PF02492.19 gi|257386421|ref|YP_003176194.1| - 0.0096 15.5 0.4 0.07 12.7 0.3 2.0 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain AAA_22 PF13401.6 gi|257386421|ref|YP_003176194.1| - 0.011 16.0 0.0 0.017 15.4 0.0 1.5 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|257386421|ref|YP_003176194.1| - 0.019 15.1 0.0 0.03 14.5 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|257386421|ref|YP_003176194.1| - 0.03 13.9 0.1 0.077 12.6 0.1 1.6 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|257386421|ref|YP_003176194.1| - 0.04 13.8 0.0 0.061 13.2 0.0 1.2 1 0 0 1 1 1 0 RsgA GTPase DUF3584 PF12128.8 gi|257386421|ref|YP_003176194.1| - 0.055 11.0 0.1 0.073 10.6 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) AAA_30 PF13604.6 gi|257386421|ref|YP_003176194.1| - 0.067 12.9 0.1 0.16 11.7 0.0 1.6 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|257386421|ref|YP_003176194.1| - 0.17 11.8 0.1 0.3 11.0 0.1 1.3 1 0 0 1 1 1 0 NACHT domain AAA_13 PF13166.6 gi|257386421|ref|YP_003176194.1| - 0.18 10.4 0.0 2.6 6.6 0.0 1.9 2 0 0 2 2 2 0 AAA domain DLIC PF05783.11 gi|257386421|ref|YP_003176194.1| - 0.19 10.5 0.0 0.33 9.7 0.0 1.3 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) NosD PF05048.13 gi|257386422|ref|YP_003176195.1| - 5.4e-26 91.3 1.0 1.5e-24 86.6 0.5 1.5 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.6 gi|257386422|ref|YP_003176195.1| - 6.8e-16 58.5 5.7 7e-15 55.2 0.5 2.8 1 1 2 3 3 3 3 Right handed beta helix region NosL PF05573.12 gi|257386422|ref|YP_003176195.1| - 3.4e-14 53.3 0.0 6.7e-14 52.4 0.0 1.4 1 0 0 1 1 1 1 NosL Pectate_lyase_3 PF12708.7 gi|257386422|ref|YP_003176195.1| - 0.097 12.5 2.6 0.4 10.5 0.4 2.6 1 1 1 2 2 2 0 Pectate lyase superfamily protein PhoU PF01895.19 gi|257386424|ref|YP_003176197.1| - 7.6e-14 51.9 2.0 1.3e-08 35.2 0.2 2.4 2 0 0 2 2 2 2 PhoU domain MazE_antitoxin PF04014.18 gi|257386424|ref|YP_003176197.1| - 9.8e-06 25.4 0.0 2.5e-05 24.1 0.0 1.7 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin Vg_Tdu PF07545.14 gi|257386424|ref|YP_003176197.1| - 0.11 12.2 0.0 0.31 10.8 0.0 1.7 1 0 0 1 1 1 0 Vestigial/Tondu family ABC_tran PF00005.27 gi|257386425|ref|YP_003176198.1| - 4.4e-31 108.2 0.0 7.5e-31 107.5 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|257386425|ref|YP_003176198.1| - 4.7e-11 43.0 0.0 0.00013 21.9 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|257386425|ref|YP_003176198.1| - 9.7e-09 35.0 0.1 1.8e-07 30.8 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|257386425|ref|YP_003176198.1| - 6.9e-05 23.1 0.0 0.00018 21.8 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|257386425|ref|YP_003176198.1| - 9.7e-05 22.2 0.0 0.013 15.2 0.0 2.1 1 1 0 2 2 2 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|257386425|ref|YP_003176198.1| - 0.00077 19.4 0.0 0.0017 18.3 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_29 PF13555.6 gi|257386425|ref|YP_003176198.1| - 0.0022 17.7 0.0 0.0052 16.5 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|257386425|ref|YP_003176198.1| - 0.004 17.7 0.1 0.014 15.9 0.0 1.9 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|257386425|ref|YP_003176198.1| - 0.015 15.7 0.4 0.058 13.8 0.4 2.1 1 1 0 1 1 1 0 AAA ATPase domain AAA_25 PF13481.6 gi|257386425|ref|YP_003176198.1| - 0.016 14.8 0.3 0.29 10.7 0.0 2.3 2 1 0 2 2 2 0 AAA domain Rad17 PF03215.15 gi|257386425|ref|YP_003176198.1| - 0.024 14.6 0.0 0.042 13.8 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain DeoRC PF00455.22 gi|257386425|ref|YP_003176198.1| - 0.026 14.5 0.0 0.048 13.6 0.0 1.4 1 0 0 1 1 1 0 DeoR C terminal sensor domain AAA_33 PF13671.6 gi|257386425|ref|YP_003176198.1| - 0.036 14.2 0.0 0.095 12.9 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|257386425|ref|YP_003176198.1| - 0.038 13.7 0.2 0.97 9.1 0.0 2.2 2 0 0 2 2 2 0 AAA domain KdpD PF02702.17 gi|257386425|ref|YP_003176198.1| - 0.064 12.7 0.1 0.11 12.0 0.1 1.3 1 0 0 1 1 1 0 Osmosensitive K+ channel His kinase sensor domain ABC_ATPase PF09818.9 gi|257386425|ref|YP_003176198.1| - 0.078 11.8 0.0 6.8 5.4 0.0 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class BPD_transp_1 PF00528.22 gi|257386426|ref|YP_003176199.1| - 5.3e-21 75.2 13.5 5.3e-21 75.2 13.5 3.8 2 1 1 3 3 3 2 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|257386427|ref|YP_003176200.1| - 4.3e-16 59.2 13.6 4.3e-16 59.2 13.6 2.6 1 1 2 3 3 3 1 Binding-protein-dependent transport system inner membrane component DUF2207 PF09972.9 gi|257386427|ref|YP_003176200.1| - 1.1 8.0 4.4 1.7 7.3 4.4 1.6 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) PBP_like_2 PF12849.7 gi|257386428|ref|YP_003176201.1| - 1e-23 84.4 0.0 1.7e-23 83.7 0.0 1.3 1 0 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.7 gi|257386428|ref|YP_003176201.1| - 1.1e-08 34.5 0.0 2.1e-08 33.5 0.0 1.5 1 1 0 1 1 1 1 PBP superfamily domain TAT_signal PF10518.9 gi|257386428|ref|YP_003176201.1| - 0.0012 18.6 3.1 0.0019 17.9 3.1 1.3 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence MutS_V PF00488.21 gi|257386429|ref|YP_003176202.1| - 1.6e-79 266.3 0.1 2.9e-79 265.5 0.1 1.4 1 0 0 1 1 1 1 MutS domain V MutS_I PF01624.20 gi|257386429|ref|YP_003176202.1| - 2.4e-36 124.4 0.0 4.9e-36 123.4 0.0 1.5 1 0 0 1 1 1 1 MutS domain I MutS_III PF05192.18 gi|257386429|ref|YP_003176202.1| - 3e-33 115.7 2.4 4.9e-33 115.0 2.4 1.3 1 0 0 1 1 1 1 MutS domain III MutS_IV PF05190.18 gi|257386429|ref|YP_003176202.1| - 5.9e-30 103.5 0.1 1.2e-29 102.5 0.1 1.5 1 0 0 1 1 1 1 MutS family domain IV MutS_II PF05188.17 gi|257386429|ref|YP_003176202.1| - 4.6e-14 52.9 0.0 1.5e-13 51.2 0.0 1.9 1 0 0 1 1 1 1 MutS domain II AAA_29 PF13555.6 gi|257386429|ref|YP_003176202.1| - 0.045 13.5 0.0 0.12 12.2 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain Thioredoxin PF00085.20 gi|257386430|ref|YP_003176203.1| - 5.5e-12 45.6 0.0 6.3e-12 45.4 0.0 1.0 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|257386430|ref|YP_003176203.1| - 5.2e-05 23.7 0.0 0.00069 20.0 0.0 2.0 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_3 PF13192.6 gi|257386430|ref|YP_003176203.1| - 6.8e-05 22.8 0.0 8.4e-05 22.6 0.0 1.2 1 0 0 1 1 1 1 Thioredoxin domain DUF836 PF05768.14 gi|257386430|ref|YP_003176203.1| - 0.0003 21.2 0.0 0.00034 20.9 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) TraF PF13728.6 gi|257386430|ref|YP_003176203.1| - 0.00077 19.3 0.0 0.00092 19.1 0.0 1.1 1 0 0 1 1 1 1 F plasmid transfer operon protein HyaE PF07449.11 gi|257386430|ref|YP_003176203.1| - 0.043 13.8 0.0 0.051 13.5 0.0 1.3 1 0 0 1 1 1 0 Hydrogenase-1 expression protein HyaE zf-HC2 PF13490.6 gi|257386430|ref|YP_003176203.1| - 0.23 11.8 1.3 1.7 9.0 0.4 2.2 2 0 0 2 2 2 0 Putative zinc-finger OST3_OST6 PF04756.13 gi|257386430|ref|YP_003176203.1| - 0.29 10.4 0.0 0.37 10.1 0.0 1.1 1 0 0 1 1 1 0 OST3 / OST6 family, transporter family Occludin_ELL PF07303.13 gi|257386431|ref|YP_003176204.1| - 0.58 10.9 6.1 4.3 8.1 4.7 2.4 1 1 1 2 2 2 0 Occludin homology domain DSBA PF01323.20 gi|257386432|ref|YP_003176205.1| - 4e-37 127.9 0.0 4.5e-37 127.7 0.0 1.0 1 0 0 1 1 1 1 DSBA-like thioredoxin domain Thioredoxin_4 PF13462.6 gi|257386432|ref|YP_003176205.1| - 4.2e-13 49.8 0.0 1.1e-09 38.6 0.0 2.1 1 1 1 2 2 2 2 Thioredoxin Thioredoxin_2 PF13098.6 gi|257386432|ref|YP_003176205.1| - 0.0034 17.8 0.3 0.04 14.4 0.0 2.2 2 1 0 2 2 2 1 Thioredoxin-like domain Thioredoxin_5 PF13743.6 gi|257386432|ref|YP_003176205.1| - 0.0099 15.6 0.0 0.091 12.4 0.0 2.3 1 1 0 1 1 1 1 Thioredoxin Thioredoxin_3 PF13192.6 gi|257386432|ref|YP_003176205.1| - 0.099 12.7 0.1 1.2 9.2 0.0 2.3 2 0 0 2 2 2 0 Thioredoxin domain Phos_pyr_kin PF08543.12 gi|257386435|ref|YP_003176208.1| - 1e-78 264.1 12.5 1.4e-78 263.7 12.5 1.2 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase ThiP_synth PF10120.9 gi|257386435|ref|YP_003176208.1| - 1.1e-22 80.4 0.4 2.7e-22 79.1 0.4 1.7 1 0 0 1 1 1 1 Thiamine-phosphate synthase PfkB PF00294.24 gi|257386435|ref|YP_003176208.1| - 7e-10 38.7 8.3 1.1e-09 38.0 8.3 1.2 1 0 0 1 1 1 1 pfkB family carbohydrate kinase CARDB PF07705.11 gi|257386436|ref|YP_003176209.1| - 0.00024 21.3 3.1 0.0047 17.2 0.4 2.6 2 0 0 2 2 2 2 CARDB MutS_V PF00488.21 gi|257386437|ref|YP_003176210.1| - 7.9e-86 286.9 0.0 1.7e-85 285.8 0.0 1.6 1 0 0 1 1 1 1 MutS domain V MutS_III PF05192.18 gi|257386437|ref|YP_003176210.1| - 1.8e-35 122.9 4.1 3.3e-35 122.1 4.1 1.5 1 0 0 1 1 1 1 MutS domain III MutS_I PF01624.20 gi|257386437|ref|YP_003176210.1| - 9.7e-27 93.5 0.0 1.7e-26 92.7 0.0 1.4 1 0 0 1 1 1 1 MutS domain I MutS_IV PF05190.18 gi|257386437|ref|YP_003176210.1| - 3.5e-22 78.5 0.6 7e-22 77.6 0.6 1.5 1 0 0 1 1 1 1 MutS family domain IV MutS_II PF05188.17 gi|257386437|ref|YP_003176210.1| - 1.7e-21 76.9 0.0 5.5e-21 75.3 0.0 1.9 1 0 0 1 1 1 1 MutS domain II AAA_14 PF13173.6 gi|257386437|ref|YP_003176210.1| - 0.17 11.9 0.0 0.59 10.2 0.0 1.9 1 1 0 1 1 1 0 AAA domain HOK_GEF PF01848.16 gi|257386437|ref|YP_003176210.1| - 0.3 10.5 0.6 0.65 9.5 0.6 1.4 1 0 0 1 1 1 0 Hok/gef family APG6_N PF17675.1 gi|257386437|ref|YP_003176210.1| - 6.8 7.2 7.0 2 9.0 2.2 2.4 2 0 0 2 2 2 0 Apg6 coiled-coil region Acetyltransf_1 PF00583.25 gi|257386438|ref|YP_003176211.1| - 7.9e-14 51.9 0.0 1.2e-13 51.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.7 gi|257386438|ref|YP_003176211.1| - 2.4e-13 51.0 0.0 3.3e-13 50.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|257386438|ref|YP_003176211.1| - 1.3e-12 47.8 0.0 1.8e-12 47.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|257386438|ref|YP_003176211.1| - 6.8e-12 45.6 0.0 9.9e-12 45.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|257386438|ref|YP_003176211.1| - 3.5e-10 39.7 0.0 5.8e-10 39.0 0.0 1.2 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.6 gi|257386438|ref|YP_003176211.1| - 0.00028 20.6 0.0 0.00046 19.9 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain GNAT_acetyltran PF12746.7 gi|257386438|ref|YP_003176211.1| - 0.0052 16.4 0.0 0.0067 16.0 0.0 1.1 1 0 0 1 1 1 1 GNAT acetyltransferase Acetyltransf_4 PF13420.7 gi|257386438|ref|YP_003176211.1| - 0.011 15.9 0.0 0.014 15.5 0.0 1.1 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|257386438|ref|YP_003176211.1| - 0.011 15.8 0.1 0.019 15.0 0.1 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.7 gi|257386438|ref|YP_003176211.1| - 0.024 14.7 0.0 0.052 13.6 0.0 1.7 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Metallophos_2 PF12850.7 gi|257386439|ref|YP_003176212.1| - 6.5e-05 23.2 2.6 0.00012 22.4 2.6 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos_2 PF12850.7 gi|257386440|ref|YP_003176213.1| - 8.2e-29 100.9 0.1 1e-28 100.6 0.1 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|257386440|ref|YP_003176213.1| - 2.2e-14 54.4 0.4 3.7e-12 47.2 0.4 2.1 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 gi|257386440|ref|YP_003176213.1| - 0.00028 20.3 0.0 0.0042 16.5 0.0 2.1 2 1 0 2 2 2 1 Metallophosphoesterase, calcineurin superfamily DoxX PF07681.12 gi|257386442|ref|YP_003176215.1| - 9.5e-11 42.2 6.9 9.5e-11 42.2 6.9 1.7 2 0 0 2 2 2 1 DoxX DoxD PF04173.13 gi|257386442|ref|YP_003176215.1| - 2.1e-06 27.8 5.7 0.00017 21.5 1.9 2.1 2 0 0 2 2 2 2 TQO small subunit DoxD VKG_Carbox PF05090.14 gi|257386442|ref|YP_003176215.1| - 0.042 12.7 1.9 1 8.1 1.7 2.0 1 1 1 2 2 2 0 Vitamin K-dependent gamma-carboxylase Peptidase_M48 PF01435.18 gi|257386444|ref|YP_003176217.1| - 2.5e-35 122.0 0.1 3.6e-35 121.5 0.1 1.2 1 0 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|257386444|ref|YP_003176217.1| - 4.5e-06 26.1 0.0 2.3e-05 23.8 0.0 1.9 2 0 0 2 2 2 1 BlaR1 peptidase M56 SprT-like PF10263.9 gi|257386444|ref|YP_003176217.1| - 0.01 15.6 0.0 0.015 15.1 0.0 1.2 1 0 0 1 1 1 0 SprT-like family bMG10 PF17973.1 gi|257386446|ref|YP_003176219.1| - 0.081 13.1 0.4 0.23 11.6 0.2 1.8 1 1 1 2 2 2 0 Bacterial Alpha-2-macroglobulin MG10 domain MutL_C PF08676.11 gi|257386447|ref|YP_003176220.1| - 1.5e-39 135.1 0.0 2.3e-39 134.5 0.0 1.3 1 0 0 1 1 1 1 MutL C terminal dimerisation domain DNA_mis_repair PF01119.19 gi|257386447|ref|YP_003176220.1| - 3.4e-34 117.1 0.0 5.3e-34 116.4 0.0 1.3 1 0 0 1 1 1 1 DNA mismatch repair protein, C-terminal domain HATPase_c_3 PF13589.6 gi|257386447|ref|YP_003176220.1| - 3.5e-12 46.3 0.1 7.2e-12 45.3 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c PF02518.26 gi|257386447|ref|YP_003176220.1| - 5.4e-07 30.1 0.2 1.1e-06 29.1 0.2 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PfkB PF00294.24 gi|257386448|ref|YP_003176221.1| - 3.4e-32 112.0 0.1 4.2e-32 111.6 0.1 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Beta-Casp PF10996.8 gi|257386449|ref|YP_003176222.1| - 3.4e-13 49.9 0.0 6.3e-13 49.0 0.0 1.4 1 0 0 1 1 1 1 Beta-Casp domain RMMBL PF07521.12 gi|257386449|ref|YP_003176222.1| - 1.2e-11 44.4 0.1 5e-11 42.4 0.0 2.0 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B PF00753.27 gi|257386449|ref|YP_003176222.1| - 9.1e-11 42.1 4.9 3.6e-10 40.2 4.9 1.9 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|257386449|ref|YP_003176222.1| - 6.3e-07 29.1 0.9 1.5e-06 27.9 0.4 1.8 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|257386449|ref|YP_003176222.1| - 6.2e-05 22.5 0.0 0.00012 21.6 0.0 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|257386449|ref|YP_003176222.1| - 0.02 14.8 0.3 0.054 13.4 0.2 1.8 1 1 0 1 1 1 0 Beta-lactamase superfamily domain Rhodanese PF00581.20 gi|257386449|ref|YP_003176222.1| - 0.065 13.8 0.0 0.15 12.6 0.0 1.6 1 0 0 1 1 1 0 Rhodanese-like domain Cupin_2 PF07883.11 gi|257386452|ref|YP_003176225.1| - 8.3e-19 67.1 0.1 1e-18 66.8 0.1 1.1 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|257386452|ref|YP_003176225.1| - 4.4e-09 36.3 0.0 6.4e-09 35.8 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain MannoseP_isomer PF01050.18 gi|257386452|ref|YP_003176225.1| - 1.7e-05 24.8 0.0 2e-05 24.5 0.0 1.0 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase Cupin_3 PF05899.12 gi|257386452|ref|YP_003176225.1| - 0.00031 20.4 0.0 0.00044 19.9 0.0 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF861) Cupin_6 PF12852.7 gi|257386452|ref|YP_003176225.1| - 0.00065 19.5 0.1 0.00068 19.4 0.1 1.1 1 0 0 1 1 1 1 Cupin Cupin_1 PF00190.22 gi|257386452|ref|YP_003176225.1| - 0.0027 17.3 0.0 0.004 16.8 0.0 1.2 1 0 0 1 1 1 1 Cupin Ectoine_synth PF06339.12 gi|257386452|ref|YP_003176225.1| - 0.019 15.2 0.0 0.021 15.0 0.0 1.2 1 0 0 1 1 1 0 Ectoine synthase TrbE PF11100.8 gi|257386453|ref|YP_003176226.1| - 0.05 13.8 0.8 1.8 8.8 0.4 2.7 2 0 0 2 2 2 0 Conjugal transfer protein TrbE DUF4466 PF14725.6 gi|257386453|ref|YP_003176226.1| - 0.21 11.1 0.0 0.28 10.6 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4466) DUF2108 PF09881.9 gi|257386453|ref|YP_003176226.1| - 0.52 10.3 4.6 0.64 10.0 1.9 2.6 2 0 0 2 2 2 0 Predicted membrane protein (DUF2108) Pyr_redox_2 PF07992.14 gi|257386454|ref|YP_003176227.1| - 4.9e-55 186.8 1.8 7e-55 186.3 1.8 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|257386454|ref|YP_003176227.1| - 2.4e-22 79.3 0.6 1.2e-18 67.5 0.5 3.4 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|257386454|ref|YP_003176227.1| - 3.8e-11 43.2 0.0 4.8e-10 39.7 0.0 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox_3 PF13738.6 gi|257386454|ref|YP_003176227.1| - 9.5e-09 34.9 0.0 3.9e-05 23.1 0.0 3.0 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|257386454|ref|YP_003176227.1| - 8.9e-08 32.3 0.9 0.02 15.1 0.1 3.2 3 1 1 4 4 4 2 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|257386454|ref|YP_003176227.1| - 5e-06 25.5 0.4 0.38 9.4 0.0 3.8 3 1 1 4 4 4 3 HI0933-like protein 3HCDH_N PF02737.18 gi|257386454|ref|YP_003176227.1| - 0.00061 19.7 0.6 0.00097 19.1 0.2 1.5 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Lycopene_cycl PF05834.12 gi|257386454|ref|YP_003176227.1| - 0.04 13.0 0.2 3.5 6.6 0.1 2.6 2 1 1 3 3 3 0 Lycopene cyclase protein UDPG_MGDP_dh_N PF03721.14 gi|257386454|ref|YP_003176227.1| - 0.044 13.4 0.3 0.15 11.6 0.1 1.9 2 0 0 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain GIDA PF01134.22 gi|257386454|ref|YP_003176227.1| - 0.076 12.1 1.3 0.12 11.4 0.3 1.8 2 0 0 2 2 2 0 Glucose inhibited division protein A NAD_binding_7 PF13241.6 gi|257386454|ref|YP_003176227.1| - 0.16 12.4 0.1 0.42 11.1 0.1 1.8 1 0 0 1 1 1 0 Putative NAD(P)-binding Rieske PF00355.26 gi|257386455|ref|YP_003176228.1| - 1.7e-07 31.1 0.2 2.5e-07 30.5 0.2 1.3 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain DUF2218 PF09981.9 gi|257386455|ref|YP_003176228.1| - 0.062 13.7 0.1 0.28 11.6 0.0 2.0 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2218) Fe_dep_repress PF01325.19 gi|257386457|ref|YP_003176230.1| - 3.9e-14 52.6 0.0 6.2e-14 51.9 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repr_C PF02742.15 gi|257386457|ref|YP_003176230.1| - 3.6e-06 27.0 0.1 5.5e-06 26.4 0.1 1.3 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain MarR_2 PF12802.7 gi|257386457|ref|YP_003176230.1| - 1e-05 25.3 0.0 1.7e-05 24.6 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|257386457|ref|YP_003176230.1| - 1.9e-05 24.5 0.0 3.3e-05 23.8 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR PF01047.22 gi|257386457|ref|YP_003176230.1| - 0.0013 18.7 0.0 0.0023 17.8 0.0 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|257386457|ref|YP_003176230.1| - 0.015 15.2 0.0 0.023 14.6 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|257386457|ref|YP_003176230.1| - 0.019 14.8 0.0 0.033 14.0 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|257386457|ref|YP_003176230.1| - 0.02 14.4 0.0 0.034 13.7 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding LexA_DNA_bind PF01726.16 gi|257386457|ref|YP_003176230.1| - 0.088 12.6 0.0 0.18 11.6 0.0 1.5 1 0 0 1 1 1 0 LexA DNA binding domain Ferritin PF00210.24 gi|257386459|ref|YP_003176232.1| - 4.8e-30 104.4 5.4 5.8e-30 104.1 5.4 1.1 1 0 0 1 1 1 1 Ferritin-like domain DUF2383 PF09537.10 gi|257386459|ref|YP_003176232.1| - 0.018 15.4 0.8 0.039 14.3 0.1 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF2383) Tautomerase PF01361.21 gi|257386459|ref|YP_003176232.1| - 0.028 14.4 0.3 0.084 12.8 0.0 2.0 2 0 0 2 2 2 0 Tautomerase enzyme RHH_1 PF01402.21 gi|257386460|ref|YP_003176233.1| - 6.4e-07 29.1 3.3 8.9e-07 28.6 3.3 1.3 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RsdA_SigD_bd PF16751.5 gi|257386460|ref|YP_003176233.1| - 0.082 13.2 6.1 0.091 13.0 6.1 1.2 1 0 0 1 1 1 0 Anti-sigma-D factor RsdA to sigma factor binding region DUF1039 PF06287.11 gi|257386461|ref|YP_003176234.1| - 0.03 14.7 0.1 0.062 13.7 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1039) Pyr_redox_2 PF07992.14 gi|257386462|ref|YP_003176235.1| - 1.6e-12 47.3 3.8 1.2e-06 28.0 2.0 2.1 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|257386462|ref|YP_003176235.1| - 2.8e-08 33.3 4.6 1.5e-05 24.3 1.0 2.3 2 0 0 2 2 2 2 FAD binding domain HI0933_like PF03486.14 gi|257386462|ref|YP_003176235.1| - 2.1e-07 30.0 0.1 0.0012 17.6 0.1 2.2 2 0 0 2 2 2 2 HI0933-like protein DAO PF01266.24 gi|257386462|ref|YP_003176235.1| - 1.9e-06 27.7 5.2 0.0022 17.7 0.4 3.0 2 1 1 3 3 3 2 FAD dependent oxidoreductase Pyr_redox_3 PF13738.6 gi|257386462|ref|YP_003176235.1| - 2.2e-05 23.9 1.2 0.032 13.5 0.1 2.4 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|257386462|ref|YP_003176235.1| - 6.2e-05 23.1 2.3 0.00028 21.1 0.2 2.3 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.12 gi|257386462|ref|YP_003176235.1| - 0.0001 21.5 0.8 0.0085 15.2 0.2 2.2 2 0 0 2 2 2 1 Lycopene cyclase protein GIDA PF01134.22 gi|257386462|ref|YP_003176235.1| - 0.001 18.2 0.1 0.001 18.2 0.1 1.5 2 0 0 2 2 2 1 Glucose inhibited division protein A Thi4 PF01946.17 gi|257386462|ref|YP_003176235.1| - 0.0012 18.1 0.4 0.0036 16.6 0.2 1.7 2 0 0 2 2 2 1 Thi4 family FAD_oxidored PF12831.7 gi|257386462|ref|YP_003176235.1| - 0.0028 17.1 2.8 0.0028 17.1 2.8 1.5 2 0 0 2 2 2 1 FAD dependent oxidoreductase AlaDh_PNT_C PF01262.21 gi|257386462|ref|YP_003176235.1| - 0.01 15.1 0.1 0.016 14.5 0.1 1.4 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Trp_halogenase PF04820.14 gi|257386462|ref|YP_003176235.1| - 0.04 12.8 5.8 0.052 12.4 0.1 2.1 1 1 0 2 2 2 0 Tryptophan halogenase FAD_binding_3 PF01494.19 gi|257386462|ref|YP_003176235.1| - 0.041 13.1 1.7 0.07 12.4 0.7 1.8 1 1 1 2 2 2 0 FAD binding domain GMC_oxred_N PF00732.19 gi|257386462|ref|YP_003176235.1| - 0.082 12.3 0.0 6.2 6.1 0.0 2.2 2 0 0 2 2 2 0 GMC oxidoreductase NAD_binding_9 PF13454.6 gi|257386462|ref|YP_003176235.1| - 0.32 11.0 5.4 0.53 10.2 0.2 3.0 3 1 1 4 4 4 0 FAD-NAD(P)-binding Peripla_BP_2 PF01497.18 gi|257386463|ref|YP_003176236.1| - 2.8e-09 36.9 0.0 5.1e-09 36.1 0.0 1.5 1 1 0 1 1 1 1 Periplasmic binding protein FecCD PF01032.18 gi|257386464|ref|YP_003176237.1| - 3.5e-46 157.7 12.3 4.7e-46 157.2 12.3 1.1 1 0 0 1 1 1 1 FecCD transport family Peripla_BP_2 PF01497.18 gi|257386465|ref|YP_003176238.1| - 6.3e-21 75.0 0.3 8.6e-20 71.3 0.0 2.0 2 0 0 2 2 2 1 Periplasmic binding protein TAT_signal PF10518.9 gi|257386465|ref|YP_003176238.1| - 0.0025 17.6 0.4 0.005 16.6 0.4 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence DUF3558 PF12079.8 gi|257386465|ref|YP_003176238.1| - 0.35 10.9 7.3 0.54 10.2 7.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3558) NAD_binding_10 PF13460.6 gi|257386466|ref|YP_003176239.1| - 3.1e-15 56.6 1.3 4.4e-15 56.0 1.3 1.3 1 0 0 1 1 1 1 NAD(P)H-binding Epimerase PF01370.21 gi|257386466|ref|YP_003176239.1| - 7.5e-13 48.5 0.0 1.1e-12 48.0 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 gi|257386466|ref|YP_003176239.1| - 2.8e-11 43.1 0.1 3.8e-11 42.6 0.1 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain NmrA PF05368.13 gi|257386466|ref|YP_003176239.1| - 7.4e-08 32.2 0.7 1.1e-07 31.6 0.1 1.7 2 0 0 2 2 2 1 NmrA-like family 3Beta_HSD PF01073.19 gi|257386466|ref|YP_003176239.1| - 1.2e-07 31.0 0.0 2.4e-07 30.0 0.0 1.4 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family DapB_N PF01113.20 gi|257386466|ref|YP_003176239.1| - 0.013 15.6 0.1 0.025 14.7 0.1 1.5 1 0 0 1 1 1 0 Dihydrodipicolinate reductase, N-terminus Polysacc_synt_2 PF02719.15 gi|257386466|ref|YP_003176239.1| - 0.014 14.5 0.0 0.21 10.7 0.1 2.3 2 1 0 2 2 2 0 Polysaccharide biosynthesis protein F420_oxidored PF03807.17 gi|257386466|ref|YP_003176239.1| - 0.061 13.9 0.1 0.43 11.2 0.0 2.4 3 0 0 3 3 3 0 NADP oxidoreductase coenzyme F420-dependent TrkA_N PF02254.18 gi|257386466|ref|YP_003176239.1| - 0.12 12.7 1.5 0.19 12.0 0.1 2.1 2 1 0 2 2 2 0 TrkA-N domain NAD_binding_4 PF07993.12 gi|257386466|ref|YP_003176239.1| - 0.17 11.0 0.1 1.1 8.3 0.0 2.1 1 1 0 2 2 2 0 Male sterility protein adh_short PF00106.25 gi|257386467|ref|YP_003176240.1| - 4.7e-30 104.5 0.1 4.7e-29 101.2 0.1 2.0 1 1 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|257386467|ref|YP_003176240.1| - 1.5e-18 67.3 1.2 2.6e-18 66.5 1.2 1.3 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|257386467|ref|YP_003176240.1| - 5.5e-07 29.7 0.4 5.5e-07 29.7 0.4 1.7 2 0 0 2 2 2 1 KR domain Epimerase PF01370.21 gi|257386467|ref|YP_003176240.1| - 0.0019 17.7 0.1 0.0087 15.5 0.1 1.8 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Shikimate_DH PF01488.20 gi|257386467|ref|YP_003176240.1| - 0.0045 17.1 0.0 0.0092 16.0 0.0 1.5 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase RmlD_sub_bind PF04321.17 gi|257386467|ref|YP_003176240.1| - 0.12 11.4 1.0 0.23 10.5 0.1 2.0 2 1 0 2 2 2 0 RmlD substrate binding domain 3HCDH_N PF02737.18 gi|257386467|ref|YP_003176240.1| - 4.4 7.2 5.1 0.88 9.4 0.1 2.0 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain eIF-1a PF01176.19 gi|257386468|ref|YP_003176241.1| - 1.9e-20 72.4 0.2 2.2e-20 72.2 0.2 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 Myosin_N PF02736.19 gi|257386468|ref|YP_003176241.1| - 0.0019 18.0 0.1 0.0049 16.7 0.0 1.7 2 0 0 2 2 2 1 Myosin N-terminal SH3-like domain ABC_membrane PF00664.23 gi|257386470|ref|YP_003176243.1| - 1.6e-39 136.2 4.5 2e-39 135.9 4.5 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 gi|257386470|ref|YP_003176243.1| - 3.5e-37 128.0 0.0 5.2e-37 127.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|257386470|ref|YP_003176243.1| - 0.0037 16.7 0.0 0.042 13.3 0.0 1.8 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|257386470|ref|YP_003176243.1| - 0.0043 17.5 1.8 0.013 15.9 1.8 1.8 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|257386470|ref|YP_003176243.1| - 0.0049 16.8 0.0 0.0096 15.8 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase Zeta_toxin PF06414.12 gi|257386470|ref|YP_003176243.1| - 0.011 15.0 0.0 0.025 13.9 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_22 PF13401.6 gi|257386470|ref|YP_003176243.1| - 0.013 15.8 0.2 0.091 13.0 0.0 2.2 3 0 0 3 3 2 0 AAA domain MMR_HSR1 PF01926.23 gi|257386470|ref|YP_003176243.1| - 0.027 14.5 0.0 0.075 13.1 0.0 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_18 PF13238.6 gi|257386470|ref|YP_003176243.1| - 0.052 14.1 0.0 0.1 13.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|257386470|ref|YP_003176243.1| - 0.058 13.1 0.0 0.13 12.0 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF87 PF01935.17 gi|257386470|ref|YP_003176243.1| - 0.074 13.1 0.0 0.16 12.0 0.0 1.5 1 0 0 1 1 1 0 Helicase HerA, central domain TsaE PF02367.17 gi|257386470|ref|YP_003176243.1| - 0.16 11.9 0.0 0.34 10.9 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE SbcCD_C PF13558.6 gi|257386470|ref|YP_003176243.1| - 0.21 11.8 1.1 3.4 8.0 0.5 2.9 2 1 0 2 2 1 0 Putative exonuclease SbcCD, C subunit DUF2107 PF09880.9 gi|257386470|ref|YP_003176243.1| - 2.4 8.4 7.5 0.2 11.8 2.2 1.9 2 0 0 2 2 1 0 Predicted membrane protein (DUF2107) DUF2079 PF09852.9 gi|257386470|ref|YP_003176243.1| - 2.5 6.9 9.0 1.5 7.6 2.0 1.9 1 1 1 2 2 2 0 Predicted membrane protein (DUF2079) TMP-TENI PF02581.17 gi|257386471|ref|YP_003176244.1| - 1.7e-59 200.2 2.6 2e-59 199.9 2.6 1.0 1 0 0 1 1 1 1 Thiamine monophosphate synthase NMO PF03060.15 gi|257386471|ref|YP_003176244.1| - 2.2e-06 27.3 5.5 2.5e-06 27.1 5.5 1.2 1 0 0 1 1 1 1 Nitronate monooxygenase ThiG PF05690.14 gi|257386471|ref|YP_003176244.1| - 1.4e-05 24.5 6.6 1.7e-05 24.2 5.8 1.5 1 1 0 1 1 1 1 Thiazole biosynthesis protein ThiG NanE PF04131.14 gi|257386471|ref|YP_003176244.1| - 0.0016 17.7 1.5 0.0022 17.2 0.5 1.7 2 0 0 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase DHO_dh PF01180.21 gi|257386471|ref|YP_003176244.1| - 1.8 7.7 4.9 0.18 11.0 0.4 1.5 2 0 0 2 2 2 0 Dihydroorotate dehydrogenase Mem_trans PF03547.18 gi|257386472|ref|YP_003176245.1| - 4.9e-21 74.6 11.8 2.2e-10 39.5 6.0 2.0 1 1 1 2 2 2 2 Membrane transport protein PsbX PF06596.11 gi|257386472|ref|YP_003176245.1| - 0.073 13.1 1.2 0.073 13.1 1.2 3.6 4 0 0 4 4 4 0 Photosystem II reaction centre X protein (PsbX) Yip1 PF04893.17 gi|257386473|ref|YP_003176246.1| - 0.0001 22.0 16.3 0.0001 22.0 16.3 2.0 1 1 1 2 2 2 1 Yip1 domain Phage_holin_4_2 PF04020.13 gi|257386473|ref|YP_003176246.1| - 0.068 13.8 14.6 0.61 10.8 14.6 2.0 1 1 0 1 1 1 0 Mycobacterial 4 TMS phage holin, superfamily IV DUF2070 PF09843.9 gi|257386473|ref|YP_003176246.1| - 1.5 7.0 5.3 1.6 6.9 5.3 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) Vma12 PF11712.8 gi|257386473|ref|YP_003176246.1| - 2.2 8.3 8.2 0.12 12.5 2.0 1.8 2 0 0 2 2 2 0 Endoplasmic reticulum-based factor for assembly of V-ATPase Peptidase_M50 PF02163.22 gi|257386474|ref|YP_003176247.1| - 3.3e-13 49.5 5.7 2.5e-07 30.2 0.3 3.0 1 1 1 2 2 2 2 Peptidase family M50 CBS PF00571.28 gi|257386474|ref|YP_003176247.1| - 7.5e-07 29.5 0.5 0.007 16.8 0.1 2.5 2 0 0 2 2 2 2 CBS domain Peptidase_M50B PF13398.6 gi|257386474|ref|YP_003176247.1| - 0.00015 21.5 5.3 0.00015 21.5 5.3 2.2 1 1 1 2 2 2 1 Peptidase M50B-like DUF2437 PF10370.9 gi|257386474|ref|YP_003176247.1| - 0.051 14.5 0.4 0.37 11.7 0.1 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF2437) Arylsulfotrans PF05935.11 gi|257386475|ref|YP_003176248.1| - 7.9e-09 34.9 0.1 3.9e-08 32.6 0.0 2.2 2 1 0 2 2 2 1 Arylsulfotransferase (ASST) Arylsulfotran_2 PF14269.6 gi|257386475|ref|YP_003176248.1| - 1.9e-07 30.8 4.0 2e-06 27.4 0.2 3.3 2 1 1 3 3 3 1 Arylsulfotransferase (ASST) NHL PF01436.21 gi|257386475|ref|YP_003176248.1| - 0.01 15.9 5.5 0.035 14.1 0.1 3.9 4 0 0 4 4 4 0 NHL repeat UCR_Fe-S_N PF10399.9 gi|257386475|ref|YP_003176248.1| - 0.14 11.6 2.8 1.5 8.2 0.0 2.5 2 0 0 2 2 2 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Zip PF02535.22 gi|257386476|ref|YP_003176249.1| - 3.2e-19 69.3 11.9 1.6e-13 50.6 6.7 2.0 1 1 1 2 2 2 2 ZIP Zinc transporter VKOR PF07884.14 gi|257386476|ref|YP_003176249.1| - 5 7.3 6.9 0.74 10.0 1.8 2.2 2 0 0 2 2 2 0 Vitamin K epoxide reductase family NAD_binding_2 PF03446.15 gi|257386478|ref|YP_003176251.1| - 1.1e-35 123.1 0.1 1.5e-35 122.7 0.1 1.2 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 6PGD PF00393.19 gi|257386478|ref|YP_003176251.1| - 2.3e-24 86.3 0.0 3.9e-24 85.5 0.0 1.4 1 0 0 1 1 1 1 6-phosphogluconate dehydrogenase, C-terminal domain 2-Hacid_dh_C PF02826.19 gi|257386478|ref|YP_003176251.1| - 0.00029 20.3 0.1 0.00044 19.7 0.1 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.18 gi|257386478|ref|YP_003176251.1| - 0.00041 20.3 0.4 0.00063 19.7 0.4 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_11 PF14833.6 gi|257386478|ref|YP_003176251.1| - 0.0011 19.2 0.1 0.019 15.2 0.0 2.4 2 1 1 3 3 3 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase F420_oxidored PF03807.17 gi|257386478|ref|YP_003176251.1| - 0.0016 19.0 0.1 0.0027 18.3 0.1 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent TrkA_N PF02254.18 gi|257386478|ref|YP_003176251.1| - 0.0019 18.5 1.3 0.0028 17.9 0.1 1.9 3 0 0 3 3 3 1 TrkA-N domain UDPG_MGDP_dh_N PF03721.14 gi|257386478|ref|YP_003176251.1| - 0.17 11.5 0.1 0.28 10.8 0.1 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Pilin_N PF07790.11 gi|257386479|ref|YP_003176252.1| - 1.1e-13 51.9 1.7 1.1e-13 51.9 1.7 2.0 2 0 0 2 2 2 1 Archaeal Type IV pilin, N-terminal DUF4690 PF15756.5 gi|257386479|ref|YP_003176252.1| - 5.4 7.7 11.8 3.5 8.3 0.1 3.0 3 0 0 3 3 3 0 Small Novel Rich in Cartilage HTH_Tnp_ISL3 PF13542.6 gi|257386481|ref|YP_003176254.1| - 0.047 13.1 0.2 0.097 12.1 0.2 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 UCR_Fe-S_N PF10399.9 gi|257386481|ref|YP_003176254.1| - 0.073 12.4 1.7 0.19 11.1 1.7 1.7 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal TAT_signal PF10518.9 gi|257386481|ref|YP_003176254.1| - 0.31 10.9 3.0 0.32 10.9 0.4 2.3 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence Fer2 PF00111.27 gi|257386482|ref|YP_003176255.1| - 7.4e-13 48.3 0.6 1.5e-12 47.3 0.6 1.5 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.6 gi|257386482|ref|YP_003176255.1| - 0.061 13.4 0.0 0.14 12.3 0.0 1.6 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Peptidase_M28 PF04389.17 gi|257386483|ref|YP_003176256.1| - 1.1e-36 126.4 0.4 1.7e-36 125.8 0.4 1.3 1 0 0 1 1 1 1 Peptidase family M28 PA PF02225.22 gi|257386483|ref|YP_003176256.1| - 5.4e-13 48.8 0.3 2.1e-12 46.9 0.1 2.1 3 0 0 3 3 3 1 PA domain Peptidase_M42 PF05343.14 gi|257386483|ref|YP_003176256.1| - 5.1e-05 22.4 0.3 8.4e-05 21.7 0.3 1.4 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.28 gi|257386483|ref|YP_003176256.1| - 0.00018 21.3 2.3 0.00018 21.3 2.3 2.0 2 1 0 2 2 2 1 Peptidase family M20/M25/M40 Nicastrin PF05450.15 gi|257386483|ref|YP_003176256.1| - 0.0069 15.9 0.1 0.011 15.2 0.1 1.3 1 0 0 1 1 1 1 Nicastrin DUF1294 PF06961.13 gi|257386484|ref|YP_003176257.1| - 0.4 11.0 4.3 14 6.0 0.4 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF1294) ABC_membrane PF00664.23 gi|257386485|ref|YP_003176258.1| - 4.8e-45 154.3 1.1 6.2e-45 154.0 1.1 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 gi|257386485|ref|YP_003176258.1| - 6.5e-36 123.9 0.0 1.4e-35 122.8 0.0 1.6 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|257386485|ref|YP_003176258.1| - 0.00045 19.7 0.1 0.019 14.4 0.0 2.1 1 1 1 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|257386485|ref|YP_003176258.1| - 0.00063 20.0 0.0 0.0063 16.8 0.0 2.2 2 0 0 2 2 2 1 AAA domain Zeta_toxin PF06414.12 gi|257386485|ref|YP_003176258.1| - 0.00079 18.8 0.0 0.0016 17.8 0.0 1.4 1 0 0 1 1 1 1 Zeta toxin AAA_24 PF13479.6 gi|257386485|ref|YP_003176258.1| - 0.0027 17.4 0.0 0.005 16.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain DUF2107 PF09880.9 gi|257386485|ref|YP_003176258.1| - 0.0037 17.3 0.4 0.0078 16.3 0.4 1.5 1 0 0 1 1 1 1 Predicted membrane protein (DUF2107) AAA_16 PF13191.6 gi|257386485|ref|YP_003176258.1| - 0.0042 17.5 0.0 0.0094 16.4 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|257386485|ref|YP_003176258.1| - 0.008 15.9 0.1 0.023 14.4 0.1 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|257386485|ref|YP_003176258.1| - 0.0081 15.9 0.4 0.02 14.6 0.4 1.8 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|257386485|ref|YP_003176258.1| - 0.0098 15.8 0.0 0.02 14.8 0.0 1.4 1 0 0 1 1 1 1 RsgA GTPase AAA PF00004.29 gi|257386485|ref|YP_003176258.1| - 0.014 15.8 0.0 0.069 13.6 0.0 2.1 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 gi|257386485|ref|YP_003176258.1| - 0.018 15.6 0.0 0.059 13.9 0.0 2.0 2 0 0 2 2 1 0 AAA domain AAA_21 PF13304.6 gi|257386485|ref|YP_003176258.1| - 0.024 14.5 0.0 0.18 11.6 0.0 2.2 2 0 0 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system AAA_33 PF13671.6 gi|257386485|ref|YP_003176258.1| - 0.032 14.4 0.0 0.071 13.3 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|257386485|ref|YP_003176258.1| - 0.097 12.7 0.1 1.1 9.2 0.0 2.3 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) MMR_HSR1 PF01926.23 gi|257386485|ref|YP_003176258.1| - 0.1 12.7 0.0 0.88 9.7 0.0 2.3 2 0 0 2 2 2 0 50S ribosome-binding GTPase DUF87 PF01935.17 gi|257386485|ref|YP_003176258.1| - 0.1 12.6 0.0 0.24 11.5 0.0 1.5 1 0 0 1 1 1 0 Helicase HerA, central domain AAA_7 PF12775.7 gi|257386485|ref|YP_003176258.1| - 0.14 11.7 0.0 0.26 10.8 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region Response_reg PF00072.24 gi|257386486|ref|YP_003176259.1| - 1.1e-23 83.5 0.3 5.2e-23 81.4 0.2 2.1 2 0 0 2 2 2 1 Response regulator receiver domain HATPase_c PF02518.26 gi|257386486|ref|YP_003176259.1| - 9.8e-20 71.1 0.1 2.8e-19 69.7 0.0 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|257386486|ref|YP_003176259.1| - 2.2e-09 37.3 0.1 5.1e-09 36.1 0.1 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS PF00989.25 gi|257386486|ref|YP_003176259.1| - 3.7e-08 33.4 0.2 1.2e-07 31.7 0.1 2.0 2 0 0 2 2 2 1 PAS fold HATPase_c_5 PF14501.6 gi|257386486|ref|YP_003176259.1| - 2.9e-07 30.3 0.0 1.1e-06 28.5 0.0 1.9 2 0 0 2 2 2 1 GHKL domain PAS_4 PF08448.10 gi|257386486|ref|YP_003176259.1| - 6.1e-07 29.7 0.2 1.3e-06 28.6 0.2 1.6 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 gi|257386486|ref|YP_003176259.1| - 3.3e-06 27.3 0.0 9.5e-06 25.8 0.0 1.9 1 0 0 1 1 1 1 PAS domain HisKA_4TM PF16926.5 gi|257386486|ref|YP_003176259.1| - 0.00066 19.3 0.2 0.0021 17.7 0.0 1.9 2 0 0 2 2 2 1 Archaeal 4TM region of histidine kinase HisKA PF00512.25 gi|257386486|ref|YP_003176259.1| - 0.026 14.5 0.0 0.086 12.9 0.0 1.9 1 0 0 1 1 1 0 His Kinase A (phospho-acceptor) domain tRNA_bind PF01588.20 gi|257386486|ref|YP_003176259.1| - 0.1 12.7 0.0 0.23 11.6 0.0 1.5 1 0 0 1 1 1 0 Putative tRNA binding domain SPOB_a PF14689.6 gi|257386486|ref|YP_003176259.1| - 0.12 12.1 0.6 0.3 10.8 0.6 1.8 1 1 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain DUF192 PF02643.15 gi|257386487|ref|YP_003176260.1| - 4.5e-59 196.6 0.0 3.6e-28 97.6 0.0 2.1 2 0 0 2 2 2 2 Uncharacterized ACR, COG1430 DUF1905 PF08922.11 gi|257386487|ref|YP_003176260.1| - 0.00062 19.8 0.0 1.2 9.2 0.0 2.5 2 0 0 2 2 2 2 Domain of unknown function (DUF1905) DUF4307 PF14155.6 gi|257386487|ref|YP_003176260.1| - 0.016 15.0 1.8 1.8 8.5 0.4 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4307) TBX PF12598.8 gi|257386487|ref|YP_003176260.1| - 0.52 11.1 2.1 1 10.2 1.7 1.7 2 0 0 2 2 2 0 T-box transcription factor zf-ribbon_3 PF13248.6 gi|257386488|ref|YP_003176261.1| - 0.011 15.2 1.1 0.72 9.3 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Prok-RING_1 PF14446.6 gi|257386488|ref|YP_003176261.1| - 0.022 14.7 1.6 1.2 9.1 0.4 2.1 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 DZR PF12773.7 gi|257386488|ref|YP_003176261.1| - 0.026 14.5 0.8 0.049 13.7 0.8 1.5 1 1 0 1 1 1 0 Double zinc ribbon zinc_ribbon_13 PF09855.9 gi|257386488|ref|YP_003176261.1| - 0.044 14.0 0.4 0.059 13.5 0.4 1.2 1 0 0 1 1 1 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Lar_restr_allev PF14354.6 gi|257386488|ref|YP_003176261.1| - 0.22 11.9 1.7 1.2 9.6 1.7 1.9 1 1 0 1 1 1 0 Restriction alleviation protein Lar CpXC PF14353.6 gi|257386488|ref|YP_003176261.1| - 0.23 11.5 0.9 2.3 8.3 0.9 1.9 1 1 0 1 1 1 0 CpXC protein UPF0547 PF10571.9 gi|257386488|ref|YP_003176261.1| - 0.4 10.8 0.4 0.4 10.8 0.4 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-ribbon_3 PF13248.6 gi|257386489|ref|YP_003176262.1| - 0.0036 16.6 1.4 0.3 10.6 0.1 2.3 2 0 0 2 2 2 2 zinc-ribbon domain DNA_ligase_ZBD PF03119.16 gi|257386489|ref|YP_003176262.1| - 0.023 14.7 0.1 0.023 14.7 0.1 1.7 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain DZR PF12773.7 gi|257386489|ref|YP_003176262.1| - 0.044 13.8 1.8 0.068 13.2 1.8 1.3 1 1 0 1 1 1 0 Double zinc ribbon zf-TFIIB PF13453.6 gi|257386489|ref|YP_003176262.1| - 0.047 13.0 1.6 0.062 12.6 0.1 1.8 2 0 0 2 2 2 0 Transcription factor zinc-finger Prok-RING_1 PF14446.6 gi|257386489|ref|YP_003176262.1| - 0.048 13.6 0.6 0.59 10.1 0.1 2.1 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 zinc_ribbon_13 PF09855.9 gi|257386489|ref|YP_003176262.1| - 0.049 13.8 0.3 0.062 13.5 0.3 1.1 1 0 0 1 1 1 0 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) Yippee-Mis18 PF03226.14 gi|257386489|ref|YP_003176262.1| - 0.091 13.0 0.7 3.4 7.9 0.1 2.0 1 1 1 2 2 2 0 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly CpXC PF14353.6 gi|257386489|ref|YP_003176262.1| - 0.13 12.3 0.3 0.19 11.8 0.3 1.2 1 0 0 1 1 1 0 CpXC protein Auto_anti-p27 PF06677.12 gi|257386489|ref|YP_003176262.1| - 0.18 12.0 1.4 0.9 9.7 0.2 2.0 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Sortilin-Vps10 PF15902.5 gi|257386490|ref|YP_003176263.1| - 1.4e-09 37.3 0.0 0.00038 19.4 0.0 2.3 1 1 1 2 2 2 2 Sortilin, neurotensin receptor 3, BNR PF02012.20 gi|257386490|ref|YP_003176263.1| - 3.4e-06 26.2 19.6 0.61 10.3 1.2 5.4 5 0 0 5 5 5 4 BNR/Asp-box repeat PSII_BNR PF14870.6 gi|257386490|ref|YP_003176263.1| - 4.6e-06 26.1 0.6 0.0059 15.9 0.1 3.7 2 1 0 2 2 2 2 Photosynthesis system II assembly factor YCF48 BNR_3 PF13859.6 gi|257386490|ref|YP_003176263.1| - 0.61 9.3 5.6 1 8.6 0.1 2.8 4 0 0 4 4 4 0 BNR repeat-like domain BNR_2 PF13088.6 gi|257386490|ref|YP_003176263.1| - 0.95 8.7 6.0 12 5.0 0.3 3.8 3 2 0 3 3 3 0 BNR repeat-like domain DUF1508 PF07411.12 gi|257386491|ref|YP_003176264.1| - 7.8e-43 144.1 4.3 2.8e-21 75.1 0.4 2.3 2 0 0 2 2 2 2 Domain of unknown function (DUF1508) Tombus_P19 PF03220.13 gi|257386491|ref|YP_003176264.1| - 0.0023 17.7 1.8 0.76 9.5 0.2 2.2 2 0 0 2 2 2 2 Tombusvirus P19 core protein Glyco_trans_4_4 PF13579.6 gi|257386491|ref|YP_003176264.1| - 0.006 17.0 0.6 0.02 15.3 0.2 1.8 1 1 1 2 2 2 1 Glycosyl transferase 4-like domain DUF2914 PF11141.8 gi|257386491|ref|YP_003176264.1| - 0.075 12.8 0.8 1.1 9.0 0.0 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF2914) Arylsulfotran_2 PF14269.6 gi|257386492|ref|YP_003176265.1| - 2.6e-09 36.9 0.2 2.3e-05 23.9 0.2 3.2 1 1 1 2 2 2 2 Arylsulfotransferase (ASST) Arylsulfotrans PF05935.11 gi|257386492|ref|YP_003176265.1| - 5.3e-09 35.5 4.0 7e-08 31.8 2.5 2.2 1 1 0 2 2 2 2 Arylsulfotransferase (ASST) PQQ PF01011.21 gi|257386492|ref|YP_003176265.1| - 0.12 12.3 0.5 8.7 6.5 0.1 3.6 3 1 0 3 3 3 0 PQQ enzyme repeat AP_endonuc_2 PF01261.24 gi|257386493|ref|YP_003176266.1| - 2.6e-15 56.4 3.2 5.6e-15 55.3 3.2 1.5 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel HTH_20 PF12840.7 gi|257386494|ref|YP_003176267.1| - 1.5e-06 28.2 0.1 5.4e-06 26.4 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|257386494|ref|YP_003176267.1| - 0.0073 16.1 0.3 0.062 13.2 0.0 2.6 3 0 0 3 3 3 1 Bacterial regulatory protein, arsR family HTH_34 PF13601.6 gi|257386494|ref|YP_003176267.1| - 0.029 14.5 0.0 0.05 13.8 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain Anti-TRAP PF15777.5 gi|257386494|ref|YP_003176267.1| - 1.1 9.3 9.1 0.32 11.0 0.7 2.8 2 1 0 2 2 2 0 Tryptophan RNA-binding attenuator protein inhibitory protein PUA PF01472.20 gi|257386495|ref|YP_003176268.1| - 1.8e-16 59.8 2.2 3e-16 59.1 2.2 1.4 1 0 0 1 1 1 1 PUA domain DUF3040 PF11239.8 gi|257386496|ref|YP_003176269.1| - 0.019 15.2 5.0 0.023 15.0 5.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) MscS_TM PF12794.7 gi|257386497|ref|YP_003176270.1| - 0.0087 14.9 3.1 0.013 14.4 3.1 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel inner membrane domain 1 MFS_1_like PF12832.7 gi|257386497|ref|YP_003176270.1| - 0.027 13.3 0.7 0.032 13.1 0.7 1.0 1 0 0 1 1 1 0 MFS_1 like family DHHC PF01529.20 gi|257386497|ref|YP_003176270.1| - 0.03 14.4 0.1 0.061 13.4 0.1 1.7 1 1 0 1 1 1 0 DHHC palmitoyltransferase DUF4131 PF13567.6 gi|257386497|ref|YP_003176270.1| - 3.9 7.1 9.3 0.21 11.3 1.5 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) HTH_3 PF01381.22 gi|257386498|ref|YP_003176271.1| - 4.8e-15 55.3 0.0 5.4e-15 55.2 0.0 1.1 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|257386498|ref|YP_003176271.1| - 2.4e-10 40.6 0.1 2.6e-10 40.5 0.1 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|257386498|ref|YP_003176271.1| - 1.7e-08 34.3 0.0 2e-08 34.1 0.0 1.0 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_38 PF13936.6 gi|257386498|ref|YP_003176271.1| - 0.00023 20.9 0.0 0.00033 20.3 0.0 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|257386498|ref|YP_003176271.1| - 0.00023 20.6 0.0 0.0003 20.3 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_23 PF13384.6 gi|257386498|ref|YP_003176271.1| - 0.0021 17.8 0.0 0.0027 17.4 0.0 1.2 1 0 0 1 1 1 1 Homeodomain-like domain HTH_25 PF13413.6 gi|257386498|ref|YP_003176271.1| - 0.0026 17.6 0.1 0.0033 17.3 0.1 1.1 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_26 PF13443.6 gi|257386498|ref|YP_003176271.1| - 0.006 17.0 0.0 0.0072 16.7 0.0 1.1 1 0 0 1 1 1 1 Cro/C1-type HTH DNA-binding domain GntR PF00392.21 gi|257386498|ref|YP_003176271.1| - 0.0073 15.9 0.1 0.0095 15.6 0.1 1.2 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_11 PF08279.12 gi|257386498|ref|YP_003176271.1| - 0.008 16.1 0.0 0.013 15.4 0.0 1.4 1 0 0 1 1 1 1 HTH domain Sigma70_r4 PF04545.16 gi|257386498|ref|YP_003176271.1| - 0.0084 15.6 0.3 0.012 15.1 0.3 1.2 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_Crp_2 PF13545.6 gi|257386498|ref|YP_003176271.1| - 0.011 15.7 0.1 0.015 15.3 0.1 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_28 PF13518.6 gi|257386498|ref|YP_003176271.1| - 0.011 15.8 0.1 0.015 15.4 0.1 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.7 gi|257386498|ref|YP_003176271.1| - 0.013 15.3 0.0 0.02 14.8 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_37 PF13744.6 gi|257386498|ref|YP_003176271.1| - 0.03 14.3 0.0 0.03 14.3 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain YdaS_antitoxin PF15943.5 gi|257386498|ref|YP_003176271.1| - 0.037 13.9 0.0 0.041 13.7 0.0 1.2 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT Sigma70_r4_2 PF08281.12 gi|257386498|ref|YP_003176271.1| - 0.062 13.0 0.2 0.18 11.5 0.1 1.7 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_29 PF13551.6 gi|257386498|ref|YP_003176271.1| - 0.081 13.0 0.0 0.12 12.5 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn helix HTH_AsnC-type PF13404.6 gi|257386498|ref|YP_003176271.1| - 0.11 12.3 0.1 0.19 11.6 0.1 1.3 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_psq PF05225.16 gi|257386498|ref|YP_003176271.1| - 0.11 12.2 0.0 0.16 11.7 0.0 1.3 1 0 0 1 1 1 0 helix-turn-helix, Psq domain MarR PF01047.22 gi|257386498|ref|YP_003176271.1| - 0.12 12.4 0.0 0.14 12.1 0.0 1.2 1 0 0 1 1 1 0 MarR family DUF1323 PF07037.11 gi|257386498|ref|YP_003176271.1| - 0.13 12.6 0.0 0.17 12.2 0.0 1.2 1 0 0 1 1 1 0 Putative transcription regulator (DUF1323) DnaJ PF00226.31 gi|257386499|ref|YP_003176272.1| - 1.2e-09 38.1 0.0 2.2e-09 37.3 0.0 1.4 1 0 0 1 1 1 1 DnaJ domain Fer2 PF00111.27 gi|257386499|ref|YP_003176272.1| - 1.6e-09 37.6 0.0 3e-09 36.7 0.0 1.4 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain RNA_pol_Rpo13 PF12136.8 gi|257386501|ref|YP_003176274.1| - 0.24 11.3 3.2 0.78 9.7 3.2 1.7 1 1 0 1 1 1 0 RNA polymerase Rpo13 subunit HTH domain NIR_SIR PF01077.22 gi|257386503|ref|YP_003176276.1| - 2.8e-44 150.4 0.0 2e-33 115.1 0.0 2.4 2 0 0 2 2 2 2 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 gi|257386503|ref|YP_003176276.1| - 1.3e-36 124.2 0.0 1.6e-16 59.9 0.0 3.3 2 1 0 2 2 2 2 Nitrite/Sulfite reductase ferredoxin-like half domain TMEM238 PF15125.6 gi|257386504|ref|YP_003176277.1| - 5.2 7.3 8.0 1.1 9.4 0.6 2.0 2 0 0 2 2 2 0 TMEM238 protein family Cys_rich_CPCC PF14206.6 gi|257386506|ref|YP_003176279.1| - 6.8e-29 99.5 0.6 8.5e-29 99.2 0.6 1.1 1 0 0 1 1 1 1 Cysteine-rich CPCC Aldo_ket_red PF00248.21 gi|257386507|ref|YP_003176280.1| - 5.4e-51 173.5 0.0 6.8e-41 140.4 0.0 2.0 1 1 1 2 2 2 2 Aldo/keto reductase family Promethin PF16015.5 gi|257386508|ref|YP_003176281.1| - 0.99 9.4 9.0 1.2 9.1 9.0 1.0 1 0 0 1 1 1 0 Promethin DUF308 PF03729.13 gi|257386508|ref|YP_003176281.1| - 3.2 8.1 14.9 0.51 10.7 4.3 2.1 1 1 1 2 2 2 0 Short repeat of unknown function (DUF308) Phage_integrase PF00589.22 gi|257386510|ref|YP_003176283.1| - 4.3e-07 29.9 0.0 1.4e-06 28.2 0.0 1.8 2 0 0 2 2 2 1 Phage integrase family Phage_int_SAM_1 PF02899.17 gi|257386510|ref|YP_003176283.1| - 7.9e-07 29.3 1.2 2.5e-06 27.7 0.4 2.2 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 gi|257386510|ref|YP_003176283.1| - 0.022 15.1 0.0 0.044 14.1 0.0 1.4 1 0 0 1 1 1 0 Phage integrase SAM-like domain AbiEi_4 PF13338.6 gi|257386511|ref|YP_003176284.1| - 0.0022 18.1 0.1 0.0035 17.5 0.1 1.4 1 1 0 1 1 1 1 Transcriptional regulator, AbiEi antitoxin Mrr_N PF14338.6 gi|257386511|ref|YP_003176284.1| - 0.0028 17.8 0.0 0.0039 17.3 0.0 1.4 1 1 0 1 1 1 1 Mrr N-terminal domain DUF2161 PF09929.9 gi|257386511|ref|YP_003176284.1| - 0.048 13.8 0.0 0.064 13.4 0.0 1.2 1 0 0 1 1 1 0 Putative PD-(D/E)XK phosphodiesterase (DUF2161) MarR_2 PF12802.7 gi|257386511|ref|YP_003176284.1| - 0.14 12.1 0.0 0.21 11.5 0.0 1.3 1 0 0 1 1 1 0 MarR family DUF977 PF06163.11 gi|257386511|ref|YP_003176284.1| - 0.19 11.7 0.0 0.21 11.5 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) DUF4271 PF14093.6 gi|257386513|ref|YP_003176286.1| - 0.091 12.7 10.9 0.11 12.3 10.2 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4271) RRM_7 PF16367.5 gi|257386513|ref|YP_003176286.1| - 0.16 12.1 0.0 0.29 11.3 0.0 1.4 1 0 0 1 1 1 0 RNA recognition motif DUF4690 PF15756.5 gi|257386513|ref|YP_003176286.1| - 1 10.0 3.7 4.8 7.9 0.7 2.4 2 0 0 2 2 2 0 Small Novel Rich in Cartilage DUF2207 PF09972.9 gi|257386513|ref|YP_003176286.1| - 2.1 7.0 6.0 3.1 6.5 6.0 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) AAA_16 PF13191.6 gi|257386514|ref|YP_003176287.1| - 1.4e-09 38.5 1.6 1.4e-09 38.5 1.6 3.1 1 1 1 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|257386514|ref|YP_003176287.1| - 1.8e-08 34.8 0.0 4.5e-08 33.5 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|257386514|ref|YP_003176287.1| - 6.1e-06 26.7 0.0 1.8e-05 25.2 0.0 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Cdc6_C PF09079.11 gi|257386514|ref|YP_003176287.1| - 0.0003 20.7 0.8 0.0013 18.6 0.2 2.2 2 0 0 2 2 2 1 CDC6, C terminal winged helix domain DUF815 PF05673.13 gi|257386514|ref|YP_003176287.1| - 0.00064 19.0 0.0 0.0012 18.0 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) NB-ARC PF00931.22 gi|257386514|ref|YP_003176287.1| - 0.0013 18.0 0.0 0.0021 17.3 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain DEAD PF00270.29 gi|257386514|ref|YP_003176287.1| - 0.0048 16.7 0.1 0.83 9.4 0.0 2.4 1 1 1 2 2 2 1 DEAD/DEAH box helicase AAA_5 PF07728.14 gi|257386514|ref|YP_003176287.1| - 0.0063 16.5 0.0 0.16 12.0 0.0 2.6 2 1 1 3 3 3 1 AAA domain (dynein-related subfamily) NACHT PF05729.12 gi|257386514|ref|YP_003176287.1| - 0.0066 16.4 0.3 0.026 14.4 0.3 2.0 1 1 0 1 1 1 1 NACHT domain ATPase_2 PF01637.18 gi|257386514|ref|YP_003176287.1| - 0.009 16.0 0.0 0.023 14.6 0.0 1.6 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_33 PF13671.6 gi|257386514|ref|YP_003176287.1| - 0.0094 16.1 0.1 0.02 15.1 0.1 1.7 1 1 0 1 1 1 1 AAA domain RuvB_N PF05496.12 gi|257386514|ref|YP_003176287.1| - 0.012 15.4 0.0 0.022 14.5 0.0 1.4 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain Sigma54_activat PF00158.26 gi|257386514|ref|YP_003176287.1| - 0.016 14.9 0.0 0.03 14.0 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain Mg_chelatase PF01078.21 gi|257386514|ref|YP_003176287.1| - 0.024 14.0 0.0 0.047 13.1 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_14 PF13173.6 gi|257386514|ref|YP_003176287.1| - 0.027 14.5 0.0 0.08 13.0 0.0 1.7 1 1 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|257386514|ref|YP_003176287.1| - 0.035 14.6 0.2 0.75 10.3 0.0 2.7 2 1 0 3 3 3 0 ABC transporter AAA_7 PF12775.7 gi|257386514|ref|YP_003176287.1| - 0.046 13.2 0.0 0.074 12.6 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region RsgA_GTPase PF03193.16 gi|257386514|ref|YP_003176287.1| - 0.047 13.6 0.0 0.12 12.3 0.0 1.7 2 0 0 2 2 2 0 RsgA GTPase TsaE PF02367.17 gi|257386514|ref|YP_003176287.1| - 0.054 13.5 0.0 0.13 12.3 0.0 1.6 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_18 PF13238.6 gi|257386514|ref|YP_003176287.1| - 0.055 14.0 0.0 0.14 12.7 0.0 1.9 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|257386514|ref|YP_003176287.1| - 0.069 12.9 0.0 0.34 10.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|257386514|ref|YP_003176287.1| - 0.092 12.5 0.2 0.39 10.4 0.0 2.1 2 0 0 2 2 2 0 IstB-like ATP binding protein RNA_helicase PF00910.22 gi|257386514|ref|YP_003176287.1| - 0.097 13.1 0.0 0.22 11.9 0.0 1.6 1 0 0 1 1 1 0 RNA helicase NTPase_1 PF03266.15 gi|257386514|ref|YP_003176287.1| - 0.13 12.2 0.1 1.6 8.6 0.0 2.6 3 0 0 3 3 3 0 NTPase TniB PF05621.11 gi|257386514|ref|YP_003176287.1| - 0.14 11.6 0.0 0.38 10.2 0.0 1.8 1 1 0 1 1 1 0 Bacterial TniB protein HhH-GPD PF00730.25 gi|257386516|ref|YP_003176289.1| - 1.1e-13 51.5 0.0 1.7e-13 51.0 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein Opy2 PF09463.10 gi|257386516|ref|YP_003176289.1| - 0.051 13.9 4.7 0.076 13.3 4.7 1.2 1 0 0 1 1 1 0 Opy2 protein HTH_27 PF13463.6 gi|257386517|ref|YP_003176290.1| - 0.0075 16.7 0.0 0.01 16.3 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_5 PF01022.20 gi|257386517|ref|YP_003176290.1| - 0.011 15.6 0.0 0.015 15.2 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|257386517|ref|YP_003176290.1| - 0.032 14.1 0.0 0.044 13.7 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF1495 PF07381.11 gi|257386517|ref|YP_003176290.1| - 0.076 12.9 0.0 1.7 8.6 0.0 2.0 1 1 1 2 2 2 0 Winged helix DNA-binding domain (DUF1495) DNA_methylase PF00145.17 gi|257386518|ref|YP_003176291.1| - 2.8e-63 214.3 0.0 4.2e-63 213.7 0.0 1.3 1 0 0 1 1 1 1 C-5 cytosine-specific DNA methylase Methyltransf_15 PF09445.10 gi|257386518|ref|YP_003176291.1| - 0.062 12.9 0.0 0.098 12.2 0.0 1.3 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase EcoRII-C PF09019.11 gi|257386520|ref|YP_003176293.1| - 0.00017 21.7 0.0 0.32 11.1 0.0 2.4 2 0 0 2 2 2 2 EcoRII C terminal Spindle_Spc25 PF08234.12 gi|257386520|ref|YP_003176293.1| - 0.02 15.1 0.6 0.15 12.3 0.1 2.5 2 1 1 3 3 3 0 Chromosome segregation protein Spc25 ComZ PF10815.8 gi|257386521|ref|YP_003176294.1| - 0.15 12.1 0.0 0.24 11.4 0.0 1.3 1 0 0 1 1 1 0 ComZ UbiA PF01040.18 gi|257386523|ref|YP_003176296.1| - 0.0072 15.7 3.3 0.0072 15.7 3.3 1.4 1 1 0 1 1 1 1 UbiA prenyltransferase family Wzy_C PF04932.15 gi|257386527|ref|YP_003176300.1| - 0.072 12.7 0.0 0.093 12.4 0.0 1.2 1 0 0 1 1 1 0 O-Antigen ligase Binary_toxB PF03495.14 gi|257386530|ref|YP_003176303.1| - 0.0043 17.2 8.3 2.6 8.3 0.1 4.4 4 0 0 4 4 4 3 Clostridial binary toxin B/anthrax toxin PA Ca-binding domain DUF5440 PF17509.2 gi|257386530|ref|YP_003176303.1| - 0.16 11.5 0.6 18 5.0 0.1 2.6 2 0 0 2 2 2 0 Family of unknown function (DUF5440) HTH_29 PF13551.6 gi|257386531|ref|YP_003176304.1| - 0.002 18.1 0.0 0.0052 16.8 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn helix HTH_28 PF13518.6 gi|257386531|ref|YP_003176304.1| - 0.012 15.7 0.0 0.048 13.8 0.0 2.0 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|257386531|ref|YP_003176304.1| - 0.025 14.4 0.0 0.11 12.4 0.0 2.1 1 0 0 1 1 1 0 Homeodomain-like domain HTH_11 PF08279.12 gi|257386531|ref|YP_003176304.1| - 0.039 13.9 0.0 0.091 12.7 0.0 1.5 1 0 0 1 1 1 0 HTH domain MethyltransfD12 PF02086.15 gi|257386533|ref|YP_003176306.1| - 2.5e-19 70.0 0.0 3.1e-19 69.7 0.0 1.1 1 0 0 1 1 1 1 D12 class N6 adenine-specific DNA methyltransferase Phage_integrase PF00589.22 gi|257386535|ref|YP_003176308.1| - 8.1e-11 42.0 0.0 7.8e-10 38.8 0.0 2.0 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.17 gi|257386535|ref|YP_003176308.1| - 2e-06 28.0 0.0 5e-06 26.7 0.0 1.7 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 gi|257386535|ref|YP_003176308.1| - 0.09 13.3 0.0 0.2 12.1 0.0 1.6 1 0 0 1 1 1 0 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 gi|257386535|ref|YP_003176308.1| - 0.22 11.9 0.0 0.48 10.8 0.0 1.5 1 0 0 1 1 1 0 Phage integrase SAM-like domain Sigma70_r4_2 PF08281.12 gi|257386536|ref|YP_003176309.1| - 7.5e-05 22.3 0.0 9.4e-05 22.0 0.0 1.1 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_38 PF13936.6 gi|257386536|ref|YP_003176309.1| - 0.036 13.8 0.0 0.053 13.3 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain Nudix_N_2 PF14803.6 gi|257386537|ref|YP_003176310.1| - 0.017 15.0 0.7 4.8 7.2 0.1 2.7 2 0 0 2 2 2 0 Nudix N-terminal zinc_ribbon_4 PF13717.6 gi|257386537|ref|YP_003176310.1| - 0.13 12.2 0.5 0.36 10.8 0.1 2.0 2 0 0 2 2 2 0 zinc-ribbon domain RHH_1 PF01402.21 gi|257386538|ref|YP_003176311.1| - 0.084 12.8 0.0 0.11 12.5 0.0 1.2 1 0 0 1 1 1 0 Ribbon-helix-helix protein, copG family Phage_integrase PF00589.22 gi|257386539|ref|YP_003176312.1| - 8.3e-14 51.7 0.0 2e-13 50.5 0.0 1.5 1 1 0 1 1 1 1 Phage integrase family HTH_23 PF13384.6 gi|257386539|ref|YP_003176312.1| - 0.0029 17.4 0.2 0.06 13.2 0.1 2.5 2 0 0 2 2 2 1 Homeodomain-like domain DUF1206 PF06724.11 gi|257386542|ref|YP_003176315.1| - 0.011 15.8 2.3 0.011 15.8 2.3 2.8 1 1 1 2 2 2 0 Domain of Unknown Function (DUF1206) Big_1 PF02369.16 gi|257386544|ref|YP_003176317.1| - 0.029 14.3 0.0 0.081 12.9 0.0 1.8 1 0 0 1 1 1 0 Bacterial Ig-like domain (group 1) AAA_16 PF13191.6 gi|257386552|ref|YP_003176325.1| - 0.0022 18.4 0.0 0.0029 18.0 0.0 1.2 1 0 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|257386552|ref|YP_003176325.1| - 0.012 15.9 0.0 0.023 15.0 0.0 1.5 1 1 0 1 1 1 0 AAA domain Zot PF05707.12 gi|257386552|ref|YP_003176325.1| - 0.026 14.2 0.0 0.057 13.0 0.0 1.7 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) AAA_18 PF13238.6 gi|257386552|ref|YP_003176325.1| - 0.057 14.0 0.0 0.13 12.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain DUF87 PF01935.17 gi|257386552|ref|YP_003176325.1| - 0.096 12.8 0.0 0.15 12.1 0.0 1.4 1 0 0 1 1 1 0 Helicase HerA, central domain KIF1B PF12423.8 gi|257386554|ref|YP_003176327.1| - 0.11 12.9 2.5 0.32 11.5 2.5 1.9 1 1 0 1 1 1 0 Kinesin protein 1B SDA1 PF05285.12 gi|257386555|ref|YP_003176328.1| - 6.6 6.0 15.1 8.2 5.7 15.1 1.3 1 0 0 1 1 1 0 SDA1 LAP1C PF05609.12 gi|257386556|ref|YP_003176329.1| - 0.36 9.9 6.9 0.38 9.8 6.9 1.2 1 0 0 1 1 1 0 Lamina-associated polypeptide 1C (LAP1C) Lin-8 PF03353.15 gi|257386556|ref|YP_003176329.1| - 0.66 9.5 10.5 0.76 9.3 10.5 1.1 1 0 0 1 1 1 0 Ras-mediated vulval-induction antagonist Presenilin PF01080.17 gi|257386556|ref|YP_003176329.1| - 0.73 8.5 8.6 0.82 8.4 8.6 1.1 1 0 0 1 1 1 0 Presenilin NPR3 PF03666.13 gi|257386556|ref|YP_003176329.1| - 1.2 7.9 5.7 1.4 7.7 5.7 1.2 1 0 0 1 1 1 0 Nitrogen Permease regulator of amino acid transport activity 3 Nop14 PF04147.12 gi|257386556|ref|YP_003176329.1| - 1.8 6.7 17.3 1.9 6.6 17.3 1.1 1 0 0 1 1 1 0 Nop14-like family PLU-1 PF08429.11 gi|257386557|ref|YP_003176330.1| - 0.034 13.3 0.0 0.054 12.7 0.0 1.2 1 0 0 1 1 1 0 PLU-1-like protein DivIVA PF05103.13 gi|257386557|ref|YP_003176330.1| - 0.2 11.8 0.0 0.2 11.8 0.0 2.2 3 0 0 3 3 3 0 DivIVA protein N6-adenineMlase PF10237.9 gi|257386558|ref|YP_003176331.1| - 0.11 12.3 0.0 0.16 11.8 0.0 1.2 1 0 0 1 1 1 0 Probable N6-adenine methyltransferase ASCH PF04266.14 gi|257386559|ref|YP_003176332.1| - 6.2e-05 23.5 0.0 7.8e-05 23.2 0.0 1.1 1 0 0 1 1 1 1 ASCH domain Tic110 PF16940.5 gi|257386559|ref|YP_003176332.1| - 0.054 12.0 0.1 0.063 11.8 0.1 1.0 1 0 0 1 1 1 0 Chloroplast envelope transporter RHH_1 PF01402.21 gi|257386561|ref|YP_003176334.1| - 0.0054 16.6 0.0 0.012 15.5 0.0 1.6 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family HTH_27 PF13463.6 gi|257386561|ref|YP_003176334.1| - 0.008 16.7 0.0 0.015 15.7 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain Fe_dep_repress PF01325.19 gi|257386561|ref|YP_003176334.1| - 0.031 14.5 0.0 0.052 13.7 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain MarR PF01047.22 gi|257386561|ref|YP_003176334.1| - 0.058 13.3 0.0 0.095 12.6 0.0 1.3 1 0 0 1 1 1 0 MarR family TrmB PF01978.19 gi|257386561|ref|YP_003176334.1| - 0.077 12.9 0.1 0.12 12.3 0.1 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|257386561|ref|YP_003176334.1| - 0.1 12.5 0.1 0.19 11.7 0.1 1.4 1 0 0 1 1 1 0 MarR family SWIM PF04434.17 gi|257386563|ref|YP_003176336.1| - 0.11 12.2 0.1 0.17 11.6 0.1 1.3 1 0 0 1 1 1 0 SWIM zinc finger Sigma70_r4_2 PF08281.12 gi|257386563|ref|YP_003176336.1| - 0.17 11.6 0.0 0.26 11.0 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 Ribosomal_S10 PF00338.22 gi|257386564|ref|YP_003176337.1| - 7.2e-26 90.3 0.0 8e-26 90.1 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e GTP_EFTU PF00009.27 gi|257386565|ref|YP_003176338.1| - 3.7e-56 189.8 0.0 4.3e-56 189.5 0.0 1.1 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D3 PF03143.17 gi|257386565|ref|YP_003176338.1| - 1e-36 125.6 0.1 2.3e-36 124.5 0.0 1.6 2 0 0 2 2 2 1 Elongation factor Tu C-terminal domain GTP_EFTU_D2 PF03144.25 gi|257386565|ref|YP_003176338.1| - 9.5e-16 58.0 3.3 4.5e-15 55.8 1.2 2.4 2 0 0 2 2 2 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|257386565|ref|YP_003176338.1| - 1e-06 28.8 0.1 7.6e-06 26.0 0.1 2.3 1 1 0 1 1 1 1 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|257386565|ref|YP_003176338.1| - 0.0038 17.1 0.2 0.38 10.6 0.0 2.4 1 1 1 2 2 2 1 RsgA GTPase Gtr1_RagA PF04670.12 gi|257386565|ref|YP_003176338.1| - 0.013 14.8 0.0 0.082 12.2 0.0 2.1 2 0 0 2 2 2 0 Gtr1/RagA G protein conserved region Dynamin_N PF00350.23 gi|257386565|ref|YP_003176338.1| - 0.013 15.5 0.0 5.2 7.1 0.0 2.4 1 1 1 2 2 2 0 Dynamin family SRPRB PF09439.10 gi|257386565|ref|YP_003176338.1| - 0.019 14.4 0.0 0.83 9.1 0.0 2.2 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit FeoB_N PF02421.18 gi|257386565|ref|YP_003176338.1| - 0.038 13.5 0.0 0.61 9.6 0.0 2.4 2 1 0 2 2 2 0 Ferrous iron transport protein B GTP_EFTU_D4 PF14578.6 gi|257386565|ref|YP_003176338.1| - 0.048 13.6 2.2 0.065 13.1 0.8 1.9 2 0 0 2 2 2 0 Elongation factor Tu domain 4 Homoserine_dh PF00742.19 gi|257386566|ref|YP_003176339.1| - 2.4e-47 161.1 0.0 3.7e-47 160.5 0.0 1.3 1 0 0 1 1 1 1 Homoserine dehydrogenase ELFV_dehydrog PF00208.21 gi|257386566|ref|YP_003176339.1| - 8.2e-10 38.8 0.2 1.5e-09 38.0 0.2 1.4 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase NAD_binding_3 PF03447.16 gi|257386566|ref|YP_003176339.1| - 0.00051 20.7 2.3 0.00072 20.2 1.3 1.8 2 1 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain 3HCDH_N PF02737.18 gi|257386566|ref|YP_003176339.1| - 0.0043 17.0 0.3 0.0064 16.4 0.3 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.16 gi|257386566|ref|YP_003176339.1| - 0.067 12.8 0.0 0.1 12.2 0.0 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA 2-Hacid_dh_C PF02826.19 gi|257386566|ref|YP_003176339.1| - 0.11 11.9 0.1 0.17 11.2 0.1 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|257386566|ref|YP_003176339.1| - 0.16 12.0 0.2 0.3 11.1 0.2 1.5 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ACT PF01842.25 gi|257386567|ref|YP_003176340.1| - 8.9e-05 22.2 0.1 0.014 15.1 0.0 2.9 3 0 0 3 3 3 2 ACT domain ABA_GPCR PF12430.8 gi|257386567|ref|YP_003176340.1| - 0.18 11.5 0.0 0.21 11.3 0.0 1.1 1 0 0 1 1 1 0 Abscisic acid G-protein coupled receptor PKcGMP_CC PF16808.5 gi|257386568|ref|YP_003176341.1| - 6.4e-06 25.9 16.1 0.00092 19.0 6.6 2.4 1 1 1 2 2 2 2 Coiled-coil N-terminus of cGMP-dependent protein kinase Peptidase_S74 PF13884.6 gi|257386568|ref|YP_003176341.1| - 2.9e-05 24.3 0.0 5.8e-05 23.3 0.0 1.5 1 0 0 1 1 1 1 Chaperone of endosialidase ATG16 PF08614.11 gi|257386568|ref|YP_003176341.1| - 0.00064 20.0 1.2 0.00097 19.4 1.2 1.2 1 0 0 1 1 1 1 Autophagy protein 16 (ATG16) UspA1_rep PF18792.1 gi|257386568|ref|YP_003176341.1| - 0.00078 19.7 97.0 0.043 14.3 5.6 10.6 10 0 0 10 10 9 5 Ubiquitous surface protein adhesin repeat HOOK PF05622.12 gi|257386568|ref|YP_003176341.1| - 0.0017 16.6 1.8 0.0024 16.1 1.8 1.1 1 0 0 1 1 1 1 HOOK protein DUF3552 PF12072.8 gi|257386568|ref|YP_003176341.1| - 0.0082 15.6 6.2 0.011 15.1 6.2 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF3552) CENP-F_leu_zip PF10473.9 gi|257386568|ref|YP_003176341.1| - 0.02 14.9 7.4 0.084 12.9 7.4 1.9 1 1 0 1 1 1 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Fez1 PF06818.15 gi|257386568|ref|YP_003176341.1| - 0.022 15.2 3.1 0.036 14.5 3.1 1.2 1 0 0 1 1 1 0 Fez1 UPF0242 PF06785.11 gi|257386568|ref|YP_003176341.1| - 0.023 14.8 1.5 0.038 14.1 1.5 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus Atg14 PF10186.9 gi|257386568|ref|YP_003176341.1| - 0.027 13.5 1.2 0.039 13.1 1.2 1.1 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 SHE3 PF17078.5 gi|257386568|ref|YP_003176341.1| - 0.034 13.8 4.6 0.11 12.2 4.6 1.7 1 1 0 1 1 1 0 SWI5-dependent HO expression protein 3 MscS_porin PF12795.7 gi|257386568|ref|YP_003176341.1| - 0.035 13.6 4.0 0.052 13.1 4.0 1.2 1 0 0 1 1 1 0 Mechanosensitive ion channel porin domain Lebercilin PF15619.6 gi|257386568|ref|YP_003176341.1| - 0.037 13.7 3.1 0.058 13.1 3.1 1.2 1 0 0 1 1 1 0 Ciliary protein causing Leber congenital amaurosis disease HSBP1 PF06825.12 gi|257386568|ref|YP_003176341.1| - 0.044 13.6 0.5 0.044 13.6 0.5 2.7 3 0 0 3 3 3 0 Heat shock factor binding protein 1 SlyX PF04102.12 gi|257386568|ref|YP_003176341.1| - 0.05 14.2 6.8 0.096 13.3 5.0 2.1 2 0 0 2 2 2 0 SlyX Fmp27_WPPW PF10359.9 gi|257386568|ref|YP_003176341.1| - 0.055 12.3 0.4 0.071 11.9 0.4 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain TMF_DNA_bd PF12329.8 gi|257386568|ref|YP_003176341.1| - 0.068 13.2 4.6 0.12 12.4 4.6 1.4 1 0 0 1 1 1 0 TATA element modulatory factor 1 DNA binding Spectrin PF00435.21 gi|257386568|ref|YP_003176341.1| - 0.15 12.6 3.2 0.28 11.7 3.2 1.4 1 0 0 1 1 1 0 Spectrin repeat Ead_Ea22 PF13935.6 gi|257386568|ref|YP_003176341.1| - 0.15 12.7 2.1 0.28 11.9 2.1 1.4 1 0 0 1 1 1 0 Ead/Ea22-like protein TMF_TATA_bd PF12325.8 gi|257386568|ref|YP_003176341.1| - 0.17 12.1 7.1 0.28 11.4 7.1 1.3 1 0 0 1 1 1 0 TATA element modulatory factor 1 TATA binding DUF16 PF01519.16 gi|257386568|ref|YP_003176341.1| - 0.2 12.2 0.5 0.35 11.4 0.5 1.3 1 0 0 1 1 1 0 Protein of unknown function DUF16 Spc7 PF08317.11 gi|257386568|ref|YP_003176341.1| - 0.26 10.1 4.0 0.35 9.7 4.0 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein BLOC1_2 PF10046.9 gi|257386568|ref|YP_003176341.1| - 0.26 11.6 4.6 0.51 10.7 1.9 2.4 2 1 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 RPW8 PF05659.11 gi|257386568|ref|YP_003176341.1| - 0.31 10.7 1.9 2.6 7.7 0.7 2.1 1 1 1 2 2 2 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 ABC_tran_CTD PF16326.5 gi|257386568|ref|YP_003176341.1| - 0.42 10.9 12.5 0.41 10.9 11.1 1.7 2 0 0 2 2 1 0 ABC transporter C-terminal domain DUF641 PF04859.12 gi|257386568|ref|YP_003176341.1| - 0.58 10.5 3.5 2 8.7 3.6 1.7 1 1 0 1 1 1 0 Plant protein of unknown function (DUF641) AAA_13 PF13166.6 gi|257386568|ref|YP_003176341.1| - 0.66 8.5 1.4 0.86 8.2 1.4 1.1 1 0 0 1 1 1 0 AAA domain FlaC_arch PF05377.11 gi|257386568|ref|YP_003176341.1| - 1 9.8 2.7 2.2 8.7 1.3 2.1 2 1 1 3 3 2 0 Flagella accessory protein C (FlaC) Csm1_N PF18504.1 gi|257386568|ref|YP_003176341.1| - 1.1 9.6 6.8 2.7 8.4 1.8 2.5 2 1 1 3 3 2 0 Csm1 N-terminal domain DUF3450 PF11932.8 gi|257386568|ref|YP_003176341.1| - 1.4 8.2 4.8 0.31 10.3 1.4 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) bZIP_1 PF00170.21 gi|257386568|ref|YP_003176341.1| - 2.4 8.3 4.4 13 5.9 0.2 2.6 2 1 0 3 3 2 0 bZIP transcription factor DivIC PF04977.15 gi|257386568|ref|YP_003176341.1| - 5.1 6.9 7.5 1.8 8.4 1.9 2.6 2 1 1 3 3 3 0 Septum formation initiator PhoU PF01895.19 gi|257386568|ref|YP_003176341.1| - 9.7 6.7 10.5 18 5.9 3.3 2.4 1 1 1 2 2 2 0 PhoU domain HisKA_7TM PF16927.5 gi|257386569|ref|YP_003176342.1| - 1.9e-11 44.4 10.4 2.8e-11 43.9 10.4 1.2 1 0 0 1 1 1 1 N-terminal 7TM region of histidine kinase HATPase_c PF02518.26 gi|257386569|ref|YP_003176342.1| - 1.9e-08 34.8 0.0 3.9e-08 33.8 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|257386569|ref|YP_003176342.1| - 8e-05 22.8 1.1 0.44 10.8 0.1 2.9 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.7 gi|257386569|ref|YP_003176342.1| - 0.0026 17.7 0.1 0.011 15.8 0.0 2.1 2 0 0 2 2 2 1 PAS domain PAS PF00989.25 gi|257386569|ref|YP_003176342.1| - 0.0031 17.5 0.3 0.044 13.8 0.1 2.6 3 0 0 3 3 3 1 PAS fold HisKA PF00512.25 gi|257386569|ref|YP_003176342.1| - 0.039 14.0 0.4 0.13 12.3 0.4 1.9 1 1 0 1 1 1 0 His Kinase A (phospho-acceptor) domain HATPase_c_2 PF13581.6 gi|257386569|ref|YP_003176342.1| - 0.16 11.9 2.2 0.17 11.8 0.1 2.2 2 0 0 2 2 2 0 Histidine kinase-like ATPase domain SOG2 PF10428.9 gi|257386569|ref|YP_003176342.1| - 4.6 6.3 12.8 8.5 5.5 12.8 1.3 1 0 0 1 1 1 0 RAM signalling pathway protein HATPase_c PF02518.26 gi|257386570|ref|YP_003176343.1| - 1.1e-17 64.6 0.0 2.5e-17 63.4 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|257386570|ref|YP_003176343.1| - 1.1e-11 44.6 0.1 3.9e-11 42.8 0.0 2.0 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HisKA_7TM PF16927.5 gi|257386570|ref|YP_003176343.1| - 1.7e-10 41.3 16.8 2.5e-10 40.8 16.8 1.2 1 0 0 1 1 1 1 N-terminal 7TM region of histidine kinase PAS_4 PF08448.10 gi|257386570|ref|YP_003176343.1| - 4.1e-05 23.8 1.4 4.1e-05 23.8 1.4 2.1 2 0 0 2 2 2 1 PAS fold PAS PF00989.25 gi|257386570|ref|YP_003176343.1| - 0.00017 21.5 0.2 0.00066 19.7 0.2 2.1 2 1 0 2 2 2 1 PAS fold PAS_8 PF13188.7 gi|257386570|ref|YP_003176343.1| - 0.00078 19.4 0.5 0.0064 16.5 0.2 2.5 2 0 0 2 2 2 1 PAS domain HATPase_c_3 PF13589.6 gi|257386570|ref|YP_003176343.1| - 0.066 13.0 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DUF983 PF06170.12 gi|257386570|ref|YP_003176343.1| - 9.3 6.7 7.5 13 6.3 3.5 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF983) Glyoxalase_6 PF18029.1 gi|257386571|ref|YP_003176344.1| - 5.2e-25 88.3 1.6 5.9e-25 88.1 1.6 1.0 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.25 gi|257386571|ref|YP_003176344.1| - 0.0084 16.3 0.0 0.039 14.1 0.0 1.8 1 1 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily GTP_EFTU PF00009.27 gi|257386572|ref|YP_003176345.1| - 8.7e-65 217.9 0.6 1.5e-64 217.1 0.6 1.4 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain EFG_C PF00679.24 gi|257386572|ref|YP_003176345.1| - 1.4e-24 85.9 0.0 3.7e-23 81.3 0.0 2.7 2 0 0 2 2 2 1 Elongation factor G C-terminus EFG_IV PF03764.18 gi|257386572|ref|YP_003176345.1| - 1.3e-22 79.9 0.0 3.8e-22 78.3 0.0 1.9 1 0 0 1 1 1 1 Elongation factor G, domain IV EFG_II PF14492.6 gi|257386572|ref|YP_003176345.1| - 2.8e-22 78.6 0.4 8.1e-22 77.1 0.4 1.9 1 0 0 1 1 1 1 Elongation Factor G, domain II GTP_EFTU_D2 PF03144.25 gi|257386572|ref|YP_003176345.1| - 4.3e-17 62.3 1.3 2.7e-16 59.7 1.3 2.5 1 0 0 1 1 1 1 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|257386572|ref|YP_003176345.1| - 1.2e-05 25.4 0.5 0.00011 22.2 0.1 2.6 2 0 0 2 2 2 1 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|257386572|ref|YP_003176345.1| - 0.092 12.6 1.3 0.56 10.1 0.0 2.6 3 1 0 3 3 3 0 RsgA GTPase SRPRB PF09439.10 gi|257386572|ref|YP_003176345.1| - 0.11 12.0 0.2 0.35 10.3 0.2 1.9 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit CbiQ PF02361.16 gi|257386574|ref|YP_003176347.1| - 5e-15 55.7 4.9 8.6e-15 55.0 4.9 1.3 1 1 0 1 1 1 1 Cobalt transport protein ABC_tran PF00005.27 gi|257386575|ref|YP_003176348.1| - 8.9e-30 104.0 0.0 1.2e-29 103.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|257386575|ref|YP_003176348.1| - 3e-11 43.7 0.5 9.7e-06 25.6 0.1 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|257386575|ref|YP_003176348.1| - 2.5e-07 31.2 1.0 4.3e-07 30.5 1.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|257386575|ref|YP_003176348.1| - 1.9e-06 27.5 0.1 3.5e-06 26.7 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|257386575|ref|YP_003176348.1| - 4e-06 26.4 0.1 4.5e-05 23.0 0.1 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_5 PF07728.14 gi|257386575|ref|YP_003176348.1| - 7.6e-06 26.0 0.1 0.00034 20.6 0.0 2.7 3 1 0 3 3 3 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|257386575|ref|YP_003176348.1| - 0.00012 22.4 0.0 0.00054 20.2 0.0 2.0 1 1 0 1 1 1 1 AAA domain Mg_chelatase PF01078.21 gi|257386575|ref|YP_003176348.1| - 0.00019 20.9 0.0 0.00041 19.8 0.0 1.6 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_23 PF13476.6 gi|257386575|ref|YP_003176348.1| - 0.00042 20.9 0.0 0.00049 20.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_7 PF12775.7 gi|257386575|ref|YP_003176348.1| - 0.0014 18.2 0.0 0.0023 17.5 0.0 1.3 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_24 PF13479.6 gi|257386575|ref|YP_003176348.1| - 0.0019 17.9 0.0 0.0037 17.0 0.0 1.5 2 0 0 2 2 1 1 AAA domain AAA_33 PF13671.6 gi|257386575|ref|YP_003176348.1| - 0.0048 17.1 0.1 0.0063 16.7 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|257386575|ref|YP_003176348.1| - 0.0052 16.5 0.0 0.014 15.1 0.0 1.6 2 0 0 2 2 2 1 AAA ATPase domain G-alpha PF00503.20 gi|257386575|ref|YP_003176348.1| - 0.0054 15.9 0.0 0.0073 15.5 0.0 1.1 1 0 0 1 1 1 1 G-protein alpha subunit DEAD PF00270.29 gi|257386575|ref|YP_003176348.1| - 0.01 15.6 0.2 2.6 7.8 0.0 2.2 2 0 0 2 2 2 0 DEAD/DEAH box helicase AAA PF00004.29 gi|257386575|ref|YP_003176348.1| - 0.01 16.3 0.0 0.022 15.2 0.0 1.8 2 0 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 gi|257386575|ref|YP_003176348.1| - 0.01 15.7 0.0 0.025 14.5 0.0 1.6 1 0 0 1 1 1 0 NACHT domain Zeta_toxin PF06414.12 gi|257386575|ref|YP_003176348.1| - 0.011 15.1 0.0 0.021 14.1 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_14 PF13173.6 gi|257386575|ref|YP_003176348.1| - 0.011 15.8 0.0 0.02 14.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|257386575|ref|YP_003176348.1| - 0.011 15.4 0.0 0.023 14.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|257386575|ref|YP_003176348.1| - 0.011 15.3 0.2 0.05 13.2 0.0 2.1 2 1 0 2 2 2 0 AAA domain TniB PF05621.11 gi|257386575|ref|YP_003176348.1| - 0.014 14.8 0.0 0.037 13.4 0.0 1.6 2 0 0 2 2 2 0 Bacterial TniB protein ATP_bind_1 PF03029.17 gi|257386575|ref|YP_003176348.1| - 0.017 14.9 0.0 0.18 11.6 0.0 2.0 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein ATPase PF06745.13 gi|257386575|ref|YP_003176348.1| - 0.017 14.5 0.0 0.068 12.5 0.0 1.8 2 0 0 2 2 2 0 KaiC SbcCD_C PF13558.6 gi|257386575|ref|YP_003176348.1| - 0.017 15.3 0.2 0.23 11.7 0.2 2.3 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit TsaE PF02367.17 gi|257386575|ref|YP_003176348.1| - 0.025 14.6 0.0 0.049 13.6 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE SRP54 PF00448.22 gi|257386575|ref|YP_003176348.1| - 0.037 13.7 0.0 0.06 13.0 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain NTPase_1 PF03266.15 gi|257386575|ref|YP_003176348.1| - 0.046 13.6 0.0 0.29 11.0 0.0 2.0 2 0 0 2 2 2 0 NTPase cobW PF02492.19 gi|257386575|ref|YP_003176348.1| - 0.087 12.4 0.0 0.18 11.4 0.0 1.6 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_28 PF13521.6 gi|257386575|ref|YP_003176348.1| - 0.094 13.0 0.0 0.18 12.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain ATPase_2 PF01637.18 gi|257386575|ref|YP_003176348.1| - 0.11 12.4 0.0 0.26 11.2 0.0 1.6 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea Roc PF08477.13 gi|257386575|ref|YP_003176348.1| - 0.11 12.7 0.0 0.19 11.9 0.0 1.4 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase PduV-EutP PF10662.9 gi|257386575|ref|YP_003176348.1| - 0.13 12.0 0.0 0.2 11.4 0.0 1.3 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_18 PF13238.6 gi|257386575|ref|YP_003176348.1| - 0.13 12.8 0.0 0.41 11.2 0.0 1.9 2 0 0 2 2 1 0 AAA domain RsgA_GTPase PF03193.16 gi|257386575|ref|YP_003176348.1| - 0.15 11.9 0.0 0.38 10.7 0.0 1.6 2 0 0 2 2 2 0 RsgA GTPase DLIC PF05783.11 gi|257386575|ref|YP_003176348.1| - 0.16 10.8 0.0 0.21 10.4 0.0 1.1 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) ABC_ATPase PF09818.9 gi|257386575|ref|YP_003176348.1| - 0.17 10.7 0.9 2.6 6.7 0.3 2.4 2 1 0 2 2 2 0 Predicted ATPase of the ABC class SRPRB PF09439.10 gi|257386575|ref|YP_003176348.1| - 0.21 11.0 0.0 0.39 10.1 0.0 1.3 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit AAA_13 PF13166.6 gi|257386575|ref|YP_003176348.1| - 0.33 9.5 0.0 0.45 9.1 0.0 1.2 1 0 0 1 1 1 0 AAA domain BioY PF02632.14 gi|257386576|ref|YP_003176349.1| - 3.6e-28 98.3 21.1 3.6e-28 98.3 21.1 1.4 2 0 0 2 2 2 1 BioY family Ribosomal_S7 PF00177.21 gi|257386577|ref|YP_003176350.1| - 1.3e-38 132.0 2.7 1.6e-38 131.7 2.7 1.0 1 0 0 1 1 1 1 Ribosomal protein S7p/S5e PBECR3 PF18812.1 gi|257386577|ref|YP_003176350.1| - 0.064 13.2 0.1 0.097 12.6 0.1 1.3 1 0 0 1 1 1 0 phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3 Ribosom_S12_S23 PF00164.25 gi|257386578|ref|YP_003176351.1| - 1.3e-49 166.5 0.3 1.6e-49 166.2 0.3 1.1 1 0 0 1 1 1 1 Ribosomal protein S12/S23 KH_2 PF07650.17 gi|257386579|ref|YP_003176352.1| - 2.6e-16 59.2 0.1 2.9e-10 39.8 0.0 2.1 1 1 1 2 2 2 2 KH domain KH_5 PF13184.6 gi|257386579|ref|YP_003176352.1| - 2.7e-08 33.8 1.0 1.6e-07 31.3 0.2 2.1 2 0 0 2 2 2 1 NusA-like KH domain KH_4 PF13083.6 gi|257386579|ref|YP_003176352.1| - 1.3e-06 28.2 0.2 4.2e-05 23.3 0.0 2.1 2 0 0 2 2 2 1 KH domain PilA4 PF18682.1 gi|257386579|ref|YP_003176352.1| - 0.028 14.8 0.1 0.99 9.8 0.1 2.1 2 0 0 2 2 2 0 Pilin A4 PRC PF05239.16 gi|257386579|ref|YP_003176352.1| - 0.056 13.5 2.8 5.3 7.2 0.4 2.2 2 0 0 2 2 2 0 PRC-barrel domain RNA_pol_Rpb1_5 PF04998.17 gi|257386580|ref|YP_003176353.1| - 7.9e-55 186.1 1.0 1e-54 185.8 1.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 HTH_43 PF09904.9 gi|257386580|ref|YP_003176353.1| - 0.046 13.7 0.0 0.13 12.2 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn helix RNA_pol_Rpb1_1 PF04997.12 gi|257386581|ref|YP_003176354.1| - 6.5e-116 387.0 0.0 1e-115 386.4 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 1 RNA_pol_Rpb1_2 PF00623.20 gi|257386581|ref|YP_003176354.1| - 4.5e-68 228.7 0.3 7.3e-68 228.0 0.3 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 2 RNA_pol_Rpb1_4 PF05000.17 gi|257386581|ref|YP_003176354.1| - 4.4e-32 110.2 0.0 1.1e-31 108.9 0.0 1.7 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 4 RNA_pol_Rpb1_3 PF04983.18 gi|257386581|ref|YP_003176354.1| - 4.9e-30 104.5 0.0 8.3e-30 103.8 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 3 RNA_pol_Rpb1_5 PF04998.17 gi|257386581|ref|YP_003176354.1| - 1.1e-26 93.8 0.0 2e-26 93.0 0.0 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb1, domain 5 HTH_3 PF01381.22 gi|257386581|ref|YP_003176354.1| - 4e-06 26.8 0.0 1.1e-05 25.3 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix MarR_2 PF12802.7 gi|257386581|ref|YP_003176354.1| - 0.017 15.0 0.0 0.05 13.5 0.0 1.8 1 0 0 1 1 1 0 MarR family HTH_31 PF13560.6 gi|257386581|ref|YP_003176354.1| - 0.023 15.0 0.2 0.078 13.3 0.2 1.8 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.6 gi|257386581|ref|YP_003176354.1| - 0.13 11.8 0.0 0.4 10.3 0.0 1.8 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding FYDLN_acid PF09538.10 gi|257386581|ref|YP_003176354.1| - 0.22 12.2 2.0 1.2 9.9 2.0 2.3 1 0 0 1 1 1 0 Protein of unknown function (FYDLN_acid) ApoC-I PF04691.12 gi|257386581|ref|YP_003176354.1| - 0.37 10.7 1.0 3.3 7.7 0.2 2.6 2 0 0 2 2 2 0 Apolipoprotein C-I (ApoC-1) RNA_pol_Rpb2_6 PF00562.28 gi|257386582|ref|YP_003176355.1| - 5.7e-127 424.0 0.1 9.7e-127 423.2 0.0 1.4 2 0 0 2 2 2 1 RNA polymerase Rpb2, domain 6 RNA_pol_Rpb2_7 PF04560.20 gi|257386582|ref|YP_003176355.1| - 3.4e-30 104.3 0.2 5.9e-30 103.5 0.2 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 7 RNA_pol_Rpb2_4 PF04566.13 gi|257386582|ref|YP_003176355.1| - 3.4e-21 75.3 0.1 6e-21 74.5 0.1 1.4 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 4 RNA_pol_Rpb2_5 PF04567.17 gi|257386582|ref|YP_003176355.1| - 1.9e-08 34.7 6.9 9e-08 32.6 6.9 2.2 2 1 0 2 2 2 1 RNA polymerase Rpb2, domain 5 OrfB_Zn_ribbon PF07282.11 gi|257386582|ref|YP_003176355.1| - 0.0059 16.5 1.1 0.012 15.5 1.1 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain NOB1_Zn_bind PF08772.11 gi|257386582|ref|YP_003176355.1| - 0.06 13.5 0.1 0.12 12.5 0.1 1.4 1 0 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like DZR PF12773.7 gi|257386582|ref|YP_003176355.1| - 0.1 12.6 0.4 0.18 11.8 0.4 1.3 1 0 0 1 1 1 0 Double zinc ribbon RNA_pol_Rpb2_1 PF04563.15 gi|257386583|ref|YP_003176356.1| - 9.8e-50 168.9 0.1 1.2e-49 168.6 0.1 1.1 1 0 0 1 1 1 1 RNA polymerase beta subunit RNA_pol_Rpb2_2 PF04561.14 gi|257386583|ref|YP_003176356.1| - 3.9e-26 91.9 0.0 6.5e-26 91.1 0.0 1.3 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 2 RNA_pol_Rpb2_3 PF04565.16 gi|257386583|ref|YP_003176356.1| - 9.6e-25 86.6 0.0 2e-24 85.6 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb2, domain 3 RNA_pol_Rpb5_C PF01191.19 gi|257386584|ref|YP_003176357.1| - 2e-24 85.2 1.0 2.3e-24 85.0 1.0 1.0 1 0 0 1 1 1 1 RNA polymerase Rpb5, C-terminal domain Phage_GP20 PF06810.11 gi|257386585|ref|YP_003176358.1| - 0.0066 16.3 0.2 0.41 10.4 0.0 2.2 2 0 0 2 2 2 1 Phage minor structural protein GP20 CorA PF01544.18 gi|257386585|ref|YP_003176358.1| - 0.0077 15.6 0.9 0.14 11.5 0.1 2.1 2 0 0 2 2 2 1 CorA-like Mg2+ transporter protein HalX PF08663.10 gi|257386585|ref|YP_003176358.1| - 0.033 14.5 8.1 0.033 14.5 8.1 3.3 3 1 0 3 3 3 0 HalX domain Rab5-bind PF09311.11 gi|257386585|ref|YP_003176358.1| - 0.056 12.8 0.6 0.11 11.9 0.1 1.6 2 0 0 2 2 2 0 Rabaptin-like protein DivIC PF04977.15 gi|257386585|ref|YP_003176358.1| - 0.23 11.3 4.2 0.32 10.8 0.7 2.2 2 0 0 2 2 2 0 Septum formation initiator PP-binding_2 PF14573.6 gi|257386585|ref|YP_003176358.1| - 0.25 11.6 2.4 0.54 10.5 0.3 2.5 2 1 1 3 3 3 0 Acyl-carrier DUF2312 PF10073.9 gi|257386585|ref|YP_003176358.1| - 1.1 9.0 7.1 0.22 11.2 1.6 2.5 3 0 0 3 3 3 0 Uncharacterized protein conserved in bacteria (DUF2312) DUF4140 PF13600.6 gi|257386585|ref|YP_003176358.1| - 2 8.9 5.4 1.1 9.8 1.5 2.4 2 1 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) TrmB PF01978.19 gi|257386586|ref|YP_003176359.1| - 8.5e-05 22.4 0.0 0.00016 21.5 0.0 1.4 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|257386586|ref|YP_003176359.1| - 0.00012 21.5 0.0 0.00021 20.8 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|257386586|ref|YP_003176359.1| - 0.0023 17.8 0.1 0.0041 17.0 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family GntR PF00392.21 gi|257386586|ref|YP_003176359.1| - 0.021 14.5 0.1 0.035 13.8 0.1 1.5 1 1 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_12 PF08461.10 gi|257386586|ref|YP_003176359.1| - 0.027 14.4 0.3 0.062 13.3 0.1 2.0 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain PspB PF06667.12 gi|257386586|ref|YP_003176359.1| - 0.036 14.1 1.0 0.68 10.0 0.1 2.3 2 0 0 2 2 2 0 Phage shock protein B HTH_AsnC-type PF13404.6 gi|257386586|ref|YP_003176359.1| - 0.036 13.9 0.1 0.12 12.3 0.0 1.9 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain Rrf2 PF02082.20 gi|257386586|ref|YP_003176359.1| - 0.074 13.4 0.0 0.42 11.0 0.0 1.9 1 1 1 2 2 2 0 Transcriptional regulator FaeA PF04703.12 gi|257386586|ref|YP_003176359.1| - 0.13 12.7 0.0 0.2 12.1 0.0 1.3 1 0 0 1 1 1 0 FaeA-like protein CRCB PF02537.15 gi|257386587|ref|YP_003176360.1| - 3e-17 62.7 13.2 3.9e-17 62.3 13.2 1.1 1 0 0 1 1 1 1 CrcB-like protein, Camphor Resistance (CrcB) CRCB PF02537.15 gi|257386588|ref|YP_003176361.1| - 7.4e-23 80.7 10.8 8.7e-23 80.5 10.8 1.0 1 0 0 1 1 1 1 CrcB-like protein, Camphor Resistance (CrcB) VanZ PF04892.12 gi|257386588|ref|YP_003176361.1| - 0.025 15.2 0.5 0.034 14.8 0.3 1.4 1 1 0 1 1 1 0 VanZ like family Big_1 PF02369.16 gi|257386589|ref|YP_003176362.1| - 4.6e-07 29.7 12.6 1.1e-06 28.5 12.6 1.7 1 1 0 1 1 1 1 Bacterial Ig-like domain (group 1) Invasin_D3 PF09134.10 gi|257386589|ref|YP_003176362.1| - 2.4e-05 24.5 8.7 3.6e-05 24.0 8.4 1.4 1 1 0 1 1 1 1 Invasin, domain 3 CarboxypepD_reg PF13620.6 gi|257386589|ref|YP_003176362.1| - 4.2e-05 23.7 9.3 6.4e-05 23.2 7.9 2.0 2 1 0 2 2 2 1 Carboxypeptidase regulatory-like domain MG4 PF17789.1 gi|257386589|ref|YP_003176362.1| - 4.7e-05 23.5 0.7 9.9e-05 22.4 0.7 1.5 1 0 0 1 1 1 1 Macroglobulin domain MG4 YtkA PF13115.6 gi|257386589|ref|YP_003176362.1| - 0.0004 20.9 3.0 0.00098 19.7 2.7 1.8 1 1 0 1 1 1 1 YtkA-like DUF4198 PF10670.9 gi|257386589|ref|YP_003176362.1| - 0.0068 16.8 0.7 0.01 16.2 0.7 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4198) Big_6 PF17936.1 gi|257386589|ref|YP_003176362.1| - 0.01 16.1 7.4 0.93 9.8 7.4 2.3 1 1 0 1 1 1 0 Bacterial Ig domain DUF824 PF05688.11 gi|257386589|ref|YP_003176362.1| - 0.039 13.8 3.7 0.12 12.2 0.9 2.5 2 0 0 2 2 2 0 Salmonella repeat of unknown function (DUF824) Tubulin PF00091.25 gi|257386590|ref|YP_003176363.1| - 4.9e-24 85.6 0.0 8.6e-24 84.8 0.0 1.4 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.6 gi|257386590|ref|YP_003176363.1| - 0.00037 19.8 0.0 0.00057 19.2 0.0 1.4 1 0 0 1 1 1 1 Tubulin like PCMT PF01135.19 gi|257386591|ref|YP_003176364.1| - 1.9e-36 125.8 0.0 2.5e-36 125.4 0.0 1.1 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.6 gi|257386591|ref|YP_003176364.1| - 1e-05 25.3 0.0 1.4e-05 24.9 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|257386591|ref|YP_003176364.1| - 9.3e-05 23.1 0.0 0.00021 21.9 0.0 1.7 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|257386591|ref|YP_003176364.1| - 0.00026 20.6 0.0 0.00038 20.1 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_12 PF08242.12 gi|257386591|ref|YP_003176364.1| - 0.016 16.0 0.0 0.58 10.9 0.0 2.3 2 0 0 2 2 2 0 Methyltransferase domain Fibrillarin PF01269.17 gi|257386591|ref|YP_003176364.1| - 0.057 12.5 0.0 0.08 12.0 0.0 1.2 1 0 0 1 1 1 0 Fibrillarin DUF4131 PF13567.6 gi|257386592|ref|YP_003176365.1| - 3.4 7.3 9.4 1 9.0 1.6 2.2 2 1 0 2 2 2 0 Domain of unknown function (DUF4131) PCMT PF01135.19 gi|257386593|ref|YP_003176366.1| - 5.1e-60 202.8 0.0 5.8e-60 202.6 0.0 1.0 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_31 PF13847.6 gi|257386593|ref|YP_003176366.1| - 6.1e-05 22.9 0.0 7.7e-05 22.5 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|257386593|ref|YP_003176366.1| - 0.00019 22.1 0.0 0.00037 21.1 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|257386593|ref|YP_003176366.1| - 0.00055 19.1 0.0 0.00074 18.7 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase GCD14 PF08704.10 gi|257386593|ref|YP_003176366.1| - 0.0022 17.7 0.0 0.0031 17.2 0.0 1.2 1 0 0 1 1 1 1 tRNA methyltransferase complex GCD14 subunit Methyltransf_11 PF08241.12 gi|257386593|ref|YP_003176366.1| - 0.015 15.9 0.2 0.047 14.3 0.0 1.9 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_32 PF13679.6 gi|257386593|ref|YP_003176366.1| - 0.026 14.5 0.0 0.039 13.9 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain CMAS PF02353.20 gi|257386593|ref|YP_003176366.1| - 0.032 13.5 0.0 0.046 13.0 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Rio2_N PF09202.11 gi|257386593|ref|YP_003176366.1| - 0.04 14.2 0.2 2.1 8.6 0.1 2.3 2 0 0 2 2 2 0 Rio2, N-terminal DUF938 PF06080.12 gi|257386593|ref|YP_003176366.1| - 0.076 12.8 0.0 0.11 12.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF938) MTS PF05175.14 gi|257386593|ref|YP_003176366.1| - 0.11 12.1 0.0 0.16 11.5 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase small domain Methyltransf_24 PF13578.6 gi|257386593|ref|YP_003176366.1| - 0.16 13.0 0.8 0.83 10.7 0.4 2.3 2 1 0 2 2 2 0 Methyltransferase domain zinc_ribbon_4 PF13717.6 gi|257386594|ref|YP_003176367.1| - 0.001 18.9 0.7 0.002 18.0 0.7 1.5 1 0 0 1 1 1 1 zinc-ribbon domain RNHCP PF12647.7 gi|257386594|ref|YP_003176367.1| - 0.033 14.1 0.2 0.06 13.3 0.2 1.4 1 0 0 1 1 1 0 RNHCP domain Y_Y_Y PF07495.13 gi|257386594|ref|YP_003176367.1| - 0.058 13.4 0.0 0.099 12.6 0.0 1.4 1 0 0 1 1 1 0 Y_Y_Y domain MT PF12777.7 gi|257386594|ref|YP_003176367.1| - 0.11 11.5 0.1 0.13 11.2 0.1 1.1 1 0 0 1 1 1 0 Microtubule-binding stalk of dynein motor zinc_ribbon_5 PF13719.6 gi|257386594|ref|YP_003176367.1| - 0.12 12.1 0.2 0.26 11.1 0.2 1.6 1 0 0 1 1 1 0 zinc-ribbon domain Nudix_N_2 PF14803.6 gi|257386594|ref|YP_003176367.1| - 1.1 9.2 5.7 0.63 10.0 1.4 2.3 1 1 2 3 3 3 0 Nudix N-terminal Peptidase_M29 PF02073.15 gi|257386596|ref|YP_003176369.1| - 7.1e-13 48.1 0.1 9.5e-11 41.1 0.1 2.1 2 0 0 2 2 2 2 Thermophilic metalloprotease (M29) Gp_dh_C PF02800.20 gi|257386597|ref|YP_003176370.1| - 7.1e-17 61.4 0.0 1.5e-16 60.4 0.0 1.5 2 0 0 2 2 2 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DapB_N PF01113.20 gi|257386597|ref|YP_003176370.1| - 8.8e-10 38.8 0.0 2e-09 37.6 0.0 1.6 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus Gp_dh_N PF00044.24 gi|257386597|ref|YP_003176370.1| - 1.5e-05 25.3 0.1 4e-05 23.9 0.1 1.9 1 1 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NAD_binding_3 PF03447.16 gi|257386597|ref|YP_003176370.1| - 0.00041 21.0 0.1 0.0051 17.4 0.1 2.4 2 0 0 2 2 2 1 Homoserine dehydrogenase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|257386597|ref|YP_003176370.1| - 0.004 16.5 0.2 0.013 14.8 0.2 1.9 1 1 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|257386597|ref|YP_003176370.1| - 0.049 13.9 0.1 0.092 13.0 0.1 1.4 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain GFO_IDH_MocA PF01408.22 gi|257386597|ref|YP_003176370.1| - 0.05 14.4 0.1 0.18 12.6 0.0 2.0 1 1 1 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold Metallophos_2 PF12850.7 gi|257386598|ref|YP_003176371.1| - 2.3e-36 125.5 0.4 2.6e-36 125.3 0.4 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|257386598|ref|YP_003176371.1| - 6.3e-06 26.8 6.9 0.00018 22.1 6.9 2.2 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 gi|257386598|ref|YP_003176371.1| - 0.029 13.7 0.6 2.8 7.2 0.0 2.1 1 1 1 2 2 2 0 Metallophosphoesterase, calcineurin superfamily Glyco_tranf_2_4 PF13704.6 gi|257386598|ref|YP_003176371.1| - 0.1 13.1 0.0 0.19 12.3 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 2 IgG_binding_B PF01378.17 gi|257386598|ref|YP_003176371.1| - 0.13 12.4 0.2 0.29 11.2 0.2 1.6 1 0 0 1 1 1 0 B domain CD20 PF04103.15 gi|257386599|ref|YP_003176372.1| - 0.29 11.2 4.4 0.87 9.7 4.4 1.8 1 0 0 1 1 1 0 CD20-like family APH PF01636.23 gi|257386601|ref|YP_003176374.1| - 3.4e-21 76.3 3.7 5.5e-21 75.6 3.7 1.4 1 0 0 1 1 1 1 Phosphotransferase enzyme family Fructosamin_kin PF03881.14 gi|257386601|ref|YP_003176374.1| - 0.077 12.2 0.0 4.8 6.3 0.1 2.8 2 1 0 2 2 2 0 Fructosamine kinase PGK PF00162.19 gi|257386602|ref|YP_003176375.1| - 3.5e-101 338.9 0.0 4.3e-101 338.6 0.0 1.0 1 0 0 1 1 1 1 Phosphoglycerate kinase zf-CSL PF05207.13 gi|257386603|ref|YP_003176376.1| - 0.13 12.0 2.7 0.28 10.9 2.7 1.6 1 0 0 1 1 1 0 CSL zinc finger DZR PF12773.7 gi|257386603|ref|YP_003176376.1| - 3.2 7.9 7.0 21 5.2 4.2 2.9 2 1 0 2 2 2 0 Double zinc ribbon ABC_tran PF00005.27 gi|257386605|ref|YP_003176378.1| - 8.4e-31 107.3 0.0 1.3e-30 106.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|257386605|ref|YP_003176378.1| - 1.2e-16 61.0 0.1 2.4e-16 60.0 0.1 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_22 PF13401.6 gi|257386605|ref|YP_003176378.1| - 1.3e-05 25.5 0.0 0.00012 22.4 0.0 2.2 1 1 0 1 1 1 1 AAA domain AAA_21 PF13304.6 gi|257386605|ref|YP_003176378.1| - 0.00049 20.0 0.2 0.035 13.9 0.1 2.3 1 1 1 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|257386605|ref|YP_003176378.1| - 0.00072 20.0 0.4 0.0018 18.7 0.0 1.9 2 1 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|257386605|ref|YP_003176378.1| - 0.003 18.0 0.0 0.026 15.0 0.0 2.4 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) SMC_N PF02463.19 gi|257386605|ref|YP_003176378.1| - 0.0043 16.5 0.0 0.0091 15.4 0.0 1.4 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain ATP-synt_ab PF00006.25 gi|257386605|ref|YP_003176378.1| - 0.025 14.2 0.0 0.036 13.7 0.0 1.2 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain ATPase_2 PF01637.18 gi|257386605|ref|YP_003176378.1| - 0.047 13.6 0.1 0.095 12.6 0.0 1.5 2 0 0 2 2 2 0 ATPase domain predominantly from Archaea NB-ARC PF00931.22 gi|257386605|ref|YP_003176378.1| - 0.095 11.9 0.0 0.16 11.1 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain NACHT PF05729.12 gi|257386605|ref|YP_003176378.1| - 0.1 12.5 0.1 0.2 11.6 0.1 1.4 1 0 0 1 1 1 0 NACHT domain Sigma54_activat PF00158.26 gi|257386605|ref|YP_003176378.1| - 0.12 12.1 0.0 5.7 6.6 0.0 2.2 2 0 0 2 2 2 0 Sigma-54 interaction domain PRK PF00485.18 gi|257386605|ref|YP_003176378.1| - 0.13 11.9 0.0 0.21 11.3 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_5 PF07728.14 gi|257386605|ref|YP_003176378.1| - 0.14 12.2 0.1 0.56 10.2 0.0 1.9 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) TniB PF05621.11 gi|257386605|ref|YP_003176378.1| - 0.14 11.5 0.0 4.2 6.7 0.0 2.2 2 0 0 2 2 2 0 Bacterial TniB protein RNA_helicase PF00910.22 gi|257386605|ref|YP_003176378.1| - 0.22 11.9 0.0 0.4 11.1 0.0 1.4 1 0 0 1 1 1 0 RNA helicase ABC_tran PF00005.27 gi|257386606|ref|YP_003176379.1| - 2e-28 99.6 0.0 2.8e-28 99.2 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|257386606|ref|YP_003176379.1| - 5.8e-19 68.4 0.1 1e-18 67.6 0.1 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region DUF2075 PF09848.9 gi|257386606|ref|YP_003176379.1| - 0.013 14.7 0.0 0.018 14.3 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) AAA_22 PF13401.6 gi|257386606|ref|YP_003176379.1| - 0.016 15.5 0.5 0.23 11.7 0.5 2.2 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|257386606|ref|YP_003176379.1| - 0.036 14.4 0.1 0.057 13.8 0.1 1.5 1 1 0 1 1 1 0 AAA ATPase domain DUF87 PF01935.17 gi|257386606|ref|YP_003176379.1| - 0.071 13.2 0.5 0.21 11.7 0.2 1.8 1 1 1 2 2 2 0 Helicase HerA, central domain ATP-synt_ab PF00006.25 gi|257386606|ref|YP_003176379.1| - 0.093 12.4 0.0 0.16 11.6 0.0 1.3 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_7 PF12775.7 gi|257386606|ref|YP_003176379.1| - 0.2 11.1 0.0 0.48 9.9 0.0 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region BPD_transp_1 PF00528.22 gi|257386607|ref|YP_003176380.1| - 3.6e-30 105.1 11.2 1.6e-29 102.9 10.8 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|257386607|ref|YP_003176380.1| - 3.4e-11 42.9 0.0 3.4e-11 42.9 0.0 3.3 4 0 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.22 gi|257386608|ref|YP_003176381.1| - 7.8e-40 136.6 12.2 7.8e-40 136.6 12.2 1.6 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.22 gi|257386609|ref|YP_003176382.1| - 8.7e-59 199.4 0.1 1.4e-58 198.7 0.1 1.3 1 1 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.9 gi|257386610|ref|YP_003176383.1| - 0.0042 16.9 0.4 0.0042 16.9 0.4 2.0 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence DUF1547 PF07577.11 gi|257386610|ref|YP_003176383.1| - 0.019 15.4 0.2 5.8 7.4 0.0 2.6 2 0 0 2 2 2 0 Domain of Unknown Function (DUF1547) Dyp_perox PF04261.12 gi|257386610|ref|YP_003176383.1| - 0.13 11.2 0.1 0.29 10.1 0.1 1.6 1 1 0 1 1 1 0 Dyp-type peroxidase family Iron_transport PF10634.9 gi|257386611|ref|YP_003176384.1| - 6.2e-07 29.7 0.1 5.7e-05 23.3 0.1 2.6 2 1 0 2 2 2 2 Fe2+ transport protein HlyD PF00529.20 gi|257386611|ref|YP_003176384.1| - 0.31 10.9 1.2 28 4.7 0.3 2.7 2 1 0 2 2 2 0 HlyD membrane-fusion protein of T1SS fragilysinNterm PF16376.5 gi|257386612|ref|YP_003176385.1| - 0.11 12.3 0.0 0.18 11.5 0.0 1.5 1 1 0 1 1 1 0 N-terminal domain of fragilysin MrpF_PhaF PF04066.13 gi|257386613|ref|YP_003176386.1| - 0.23 11.9 4.5 0.35 11.3 4.3 1.4 1 1 0 1 1 1 0 Multiple resistance and pH regulation protein F (MrpF / PhaF) NOG1_N PF17835.1 gi|257386614|ref|YP_003176387.1| - 2e-38 131.9 0.0 4.1e-38 130.9 0.0 1.5 2 0 0 2 2 2 1 NOG1 N-terminal helical domain MMR_HSR1 PF01926.23 gi|257386614|ref|YP_003176387.1| - 1.2e-21 76.9 0.0 2.2e-21 76.0 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase NOG1 PF06858.14 gi|257386614|ref|YP_003176387.1| - 2.1e-20 72.3 0.0 4.9e-20 71.1 0.0 1.7 1 0 0 1 1 1 1 Nucleolar GTP-binding protein 1 (NOG1) FeoB_N PF02421.18 gi|257386614|ref|YP_003176387.1| - 8.7e-11 41.6 0.0 1.3e-10 41.0 0.0 1.3 1 0 0 1 1 1 1 Ferrous iron transport protein B Dynamin_N PF00350.23 gi|257386614|ref|YP_003176387.1| - 0.00048 20.2 0.1 1 9.4 0.0 2.4 1 1 1 2 2 2 2 Dynamin family AIG1 PF04548.16 gi|257386614|ref|YP_003176387.1| - 0.0023 17.3 0.0 0.0034 16.7 0.0 1.4 1 0 0 1 1 1 1 AIG1 family RsgA_GTPase PF03193.16 gi|257386614|ref|YP_003176387.1| - 0.0044 16.9 0.0 0.039 13.9 0.0 2.4 2 1 0 2 2 2 1 RsgA GTPase AAA_16 PF13191.6 gi|257386614|ref|YP_003176387.1| - 0.017 15.5 0.0 0.041 14.3 0.0 1.7 1 0 0 1 1 1 0 AAA ATPase domain Ras PF00071.22 gi|257386614|ref|YP_003176387.1| - 0.042 13.4 0.0 0.15 11.7 0.0 1.9 1 1 0 1 1 1 0 Ras family AAA_18 PF13238.6 gi|257386614|ref|YP_003176387.1| - 0.12 12.9 0.0 0.81 10.2 0.0 2.3 2 1 0 2 2 2 0 AAA domain HTH_20 PF12840.7 gi|257386615|ref|YP_003176388.1| - 0.32 11.1 6.2 0.1 12.6 2.9 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain ASCH PF04266.14 gi|257386616|ref|YP_003176389.1| - 0.0026 18.3 0.1 0.0036 17.9 0.1 1.4 1 1 0 1 1 1 1 ASCH domain Tox-REase-9 PF15650.6 gi|257386616|ref|YP_003176389.1| - 0.037 14.3 0.0 0.049 13.9 0.0 1.2 1 0 0 1 1 1 0 Restriction endonuclease fold toxin 9 Herpes_US12 PF05363.12 gi|257386616|ref|YP_003176389.1| - 0.19 12.5 1.3 0.65 10.8 0.7 1.9 1 1 1 2 2 2 0 Herpesvirus US12 family PRA-PH PF01503.17 gi|257386617|ref|YP_003176390.1| - 2e-17 63.4 2.4 2.3e-17 63.2 2.4 1.1 1 0 0 1 1 1 1 Phosphoribosyl-ATP pyrophosphohydrolase MazG PF03819.17 gi|257386617|ref|YP_003176390.1| - 0.0029 17.7 3.7 0.0029 17.7 3.7 1.9 2 1 0 2 2 2 1 MazG nucleotide pyrophosphohydrolase domain UBA_6 PF18039.1 gi|257386617|ref|YP_003176390.1| - 0.046 13.6 0.7 3 7.8 0.1 2.2 2 0 0 2 2 2 0 UBA-like domain VirB3 PF05101.13 gi|257386618|ref|YP_003176391.1| - 0.67 10.2 4.6 0.74 10.1 4.6 1.1 1 0 0 1 1 1 0 Type IV secretory pathway, VirB3-like protein SNO PF01174.19 gi|257386619|ref|YP_003176392.1| - 1.5e-55 188.0 0.0 1.6e-55 187.9 0.0 1.0 1 0 0 1 1 1 1 SNO glutamine amidotransferase family GATase_3 PF07685.14 gi|257386619|ref|YP_003176392.1| - 7.7e-09 35.4 0.0 1.7e-08 34.3 0.0 1.6 2 0 0 2 2 2 1 CobB/CobQ-like glutamine amidotransferase domain Peptidase_S51 PF03575.17 gi|257386619|ref|YP_003176392.1| - 0.00069 19.3 0.0 0.0009 18.9 0.0 1.2 1 0 0 1 1 1 1 Peptidase family S51 DJ-1_PfpI PF01965.24 gi|257386619|ref|YP_003176392.1| - 0.0023 17.7 0.1 0.0061 16.4 0.0 1.6 2 0 0 2 2 2 1 DJ-1/PfpI family GATase PF00117.28 gi|257386619|ref|YP_003176392.1| - 0.0052 16.6 0.0 0.029 14.1 0.0 1.9 1 1 0 1 1 1 1 Glutamine amidotransferase class-I BPL_N PF09825.9 gi|257386619|ref|YP_003176392.1| - 0.083 12.0 0.0 0.25 10.4 0.0 1.7 2 0 0 2 2 2 0 Biotin-protein ligase, N terminal PGM_PMM_IV PF00408.20 gi|257386619|ref|YP_003176392.1| - 0.13 12.5 0.0 0.33 11.1 0.0 1.7 1 0 0 1 1 1 0 Phosphoglucomutase/phosphomannomutase, C-terminal domain PrsW-protease PF13367.6 gi|257386620|ref|YP_003176393.1| - 4.2e-45 153.6 15.1 4.2e-45 153.6 15.1 1.5 2 0 0 2 2 2 1 PrsW family intramembrane metalloprotease DUF373 PF04123.13 gi|257386620|ref|YP_003176393.1| - 8.3 5.7 11.7 0.58 9.5 4.5 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF373) Lum_binding PF00677.17 gi|257386621|ref|YP_003176394.1| - 4e-44 148.5 0.0 7e-24 83.6 0.0 2.0 2 0 0 2 2 2 2 Lumazine binding domain DUF2834 PF11196.8 gi|257386623|ref|YP_003176396.1| - 0.0081 16.5 0.3 0.0096 16.3 0.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2834) PLDc_N PF13396.6 gi|257386623|ref|YP_003176396.1| - 0.13 12.2 10.4 0.18 11.8 8.3 2.1 1 1 1 2 2 2 0 Phospholipase_D-nuclease N-terminal FixQ PF05545.11 gi|257386623|ref|YP_003176396.1| - 0.21 11.6 0.1 0.21 11.6 0.1 2.0 1 1 1 2 2 2 0 Cbb3-type cytochrome oxidase component FixQ UvrD-helicase PF00580.21 gi|257386624|ref|YP_003176397.1| - 2.9e-26 92.7 0.0 2.1e-12 47.2 0.0 2.3 2 0 0 2 2 2 2 UvrD/REP helicase N-terminal domain AAA_19 PF13245.6 gi|257386624|ref|YP_003176397.1| - 2.5e-25 89.5 0.0 6.8e-25 88.1 0.0 1.7 2 0 0 2 2 2 1 AAA domain UvrD_C PF13361.6 gi|257386624|ref|YP_003176397.1| - 1.3e-15 57.6 0.0 1.7e-09 37.5 0.0 2.2 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain UvrD_C_2 PF13538.6 gi|257386624|ref|YP_003176397.1| - 2.6e-09 36.8 0.3 0.0022 17.8 0.0 2.8 3 0 0 3 3 3 2 UvrD-like helicase C-terminal domain AAA_30 PF13604.6 gi|257386624|ref|YP_003176397.1| - 1.3e-07 31.5 0.0 0.002 17.9 0.0 3.4 4 0 0 4 4 4 2 AAA domain Viral_helicase1 PF01443.18 gi|257386624|ref|YP_003176397.1| - 3.2e-05 23.8 0.0 1.7 8.3 0.0 3.9 4 0 0 4 4 4 2 Viral (Superfamily 1) RNA helicase AAA_22 PF13401.6 gi|257386624|ref|YP_003176397.1| - 0.0021 18.3 0.0 0.64 10.3 0.0 2.7 2 0 0 2 2 2 1 AAA domain Herpes_ori_bp PF02399.15 gi|257386624|ref|YP_003176397.1| - 0.004 15.3 0.0 0.006 14.7 0.0 1.1 1 0 0 1 1 1 1 Origin of replication binding protein AAA_11 PF13086.6 gi|257386624|ref|YP_003176397.1| - 0.0041 16.9 0.0 0.012 15.4 0.0 1.7 2 0 0 2 2 2 1 AAA domain DEAD PF00270.29 gi|257386624|ref|YP_003176397.1| - 0.0073 16.1 0.5 3 7.6 0.0 2.8 3 0 0 3 3 3 1 DEAD/DEAH box helicase DUF2075 PF09848.9 gi|257386624|ref|YP_003176397.1| - 0.013 14.7 0.0 0.45 9.7 0.0 2.8 3 0 0 3 3 3 0 Uncharacterized conserved protein (DUF2075) AAA_25 PF13481.6 gi|257386624|ref|YP_003176397.1| - 0.021 14.4 1.6 6.3 6.3 0.0 3.6 3 1 0 3 3 3 0 AAA domain AAA_14 PF13173.6 gi|257386624|ref|YP_003176397.1| - 0.035 14.1 0.0 9.2 6.3 0.1 2.5 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.22 gi|257386624|ref|YP_003176397.1| - 0.096 12.3 0.2 2.1 7.9 0.0 2.4 3 0 0 3 3 3 0 SRP54-type protein, GTPase domain AAA_17 PF13207.6 gi|257386624|ref|YP_003176397.1| - 0.25 11.8 2.6 2.1 8.8 0.3 3.2 2 1 0 3 3 3 0 AAA domain PhnA_Zn_Ribbon PF08274.12 gi|257386625|ref|YP_003176398.1| - 0.0014 18.5 0.1 0.0032 17.4 0.1 1.5 1 1 0 1 1 1 1 PhnA Zinc-Ribbon DZR PF12773.7 gi|257386625|ref|YP_003176398.1| - 0.014 15.4 0.5 0.028 14.5 0.5 1.5 1 1 0 1 1 1 0 Double zinc ribbon Nudix_N_2 PF14803.6 gi|257386625|ref|YP_003176398.1| - 0.018 14.9 2.1 0.07 13.1 2.1 1.9 1 1 0 1 1 1 0 Nudix N-terminal Zn-ribbon_8 PF09723.10 gi|257386625|ref|YP_003176398.1| - 0.02 15.0 3.7 0.034 14.3 3.7 1.5 1 1 0 1 1 1 0 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|257386625|ref|YP_003176398.1| - 0.034 13.6 2.3 1.5 8.3 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-ACC PF17848.1 gi|257386625|ref|YP_003176398.1| - 0.064 13.4 2.4 7 6.8 0.2 2.2 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain TF_Zn_Ribbon PF08271.12 gi|257386625|ref|YP_003176398.1| - 0.18 11.4 5.0 0.6 9.7 5.0 1.8 1 1 0 1 1 1 0 TFIIB zinc-binding zinc_ribbon_6 PF14599.6 gi|257386625|ref|YP_003176398.1| - 0.29 11.2 2.5 1.3 9.1 0.2 2.1 2 0 0 2 2 2 0 Zinc-ribbon A2L_zn_ribbon PF08792.10 gi|257386625|ref|YP_003176398.1| - 0.33 10.7 3.6 5.6 6.8 0.1 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain zinc_ribbon_9 PF14369.6 gi|257386625|ref|YP_003176398.1| - 4.3 7.7 7.2 34 4.8 7.3 2.0 1 1 0 1 1 1 0 zinc-ribbon CbiM PF01891.16 gi|257386626|ref|YP_003176399.1| - 0.027 14.3 2.4 0.032 14.0 2.4 1.1 1 0 0 1 1 1 0 Cobalt uptake substrate-specific transmembrane region CPP1-like PF11833.8 gi|257386626|ref|YP_003176399.1| - 0.23 11.1 2.6 0.27 10.9 2.6 1.2 1 0 0 1 1 1 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like HTH_20 PF12840.7 gi|257386627|ref|YP_003176400.1| - 2.7e-08 33.7 0.4 3.8e-08 33.3 0.4 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|257386627|ref|YP_003176400.1| - 1.2e-06 27.9 0.0 2.3e-06 27.0 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|257386627|ref|YP_003176400.1| - 1.4e-05 24.8 0.1 2e-05 24.3 0.1 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|257386627|ref|YP_003176400.1| - 2.4e-05 24.1 0.1 3.6e-05 23.6 0.1 1.2 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|257386627|ref|YP_003176400.1| - 0.00068 19.5 0.0 0.00099 19.0 0.0 1.4 1 0 0 1 1 1 1 HTH domain FUR PF01475.19 gi|257386627|ref|YP_003176400.1| - 0.00072 19.7 0.1 0.00095 19.3 0.1 1.3 1 1 0 1 1 1 1 Ferric uptake regulator family ArsR PF09824.9 gi|257386627|ref|YP_003176400.1| - 0.00078 19.1 0.1 0.00083 19.0 0.1 1.1 1 0 0 1 1 1 1 ArsR transcriptional regulator HTH_5 PF01022.20 gi|257386627|ref|YP_003176400.1| - 0.0014 18.4 0.1 0.0026 17.6 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Sigma70_r4_2 PF08281.12 gi|257386627|ref|YP_003176400.1| - 0.0028 17.3 0.1 0.0058 16.3 0.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 TrmB PF01978.19 gi|257386627|ref|YP_003176400.1| - 0.0039 17.0 0.1 0.007 16.2 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_AsnC-type PF13404.6 gi|257386627|ref|YP_003176400.1| - 0.004 17.0 0.1 0.0065 16.3 0.1 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_23 PF13384.6 gi|257386627|ref|YP_003176400.1| - 0.007 16.1 0.0 0.015 15.1 0.0 1.6 1 0 0 1 1 1 1 Homeodomain-like domain TFIIE_alpha PF02002.17 gi|257386627|ref|YP_003176400.1| - 0.011 15.6 0.2 0.013 15.4 0.2 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit Plk4_PB1 PF18190.1 gi|257386627|ref|YP_003176400.1| - 0.02 15.1 0.1 0.041 14.1 0.0 1.4 1 1 0 1 1 1 0 Polo-like Kinase 4 Polo Box 1 DprA_WH PF17782.1 gi|257386627|ref|YP_003176400.1| - 0.043 13.9 0.1 0.067 13.3 0.1 1.3 1 0 0 1 1 1 0 DprA winged helix domain DUF5110 PF17137.4 gi|257386627|ref|YP_003176400.1| - 0.045 14.0 0.3 0.062 13.6 0.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5110) HTH_36 PF13730.6 gi|257386627|ref|YP_003176400.1| - 0.094 12.7 0.0 0.14 12.2 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Mga PF05043.13 gi|257386627|ref|YP_003176400.1| - 0.11 13.1 0.1 0.27 11.8 0.0 1.7 2 0 0 2 2 2 0 Mga helix-turn-helix domain HTH_29 PF13551.6 gi|257386627|ref|YP_003176400.1| - 0.15 12.1 0.0 0.23 11.5 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix PadR PF03551.14 gi|257386628|ref|YP_003176401.1| - 5e-09 36.0 0.0 8.5e-09 35.3 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family FUR PF01475.19 gi|257386628|ref|YP_003176401.1| - 0.025 14.7 0.0 0.036 14.2 0.0 1.2 1 0 0 1 1 1 0 Ferric uptake regulator family OrfB_Zn_ribbon PF07282.11 gi|257386629|ref|YP_003176402.1| - 0.2 11.6 2.4 0.73 9.8 2.4 1.8 1 1 0 1 1 1 0 Putative transposase DNA-binding domain zf-ribbon_3 PF13248.6 gi|257386629|ref|YP_003176402.1| - 0.23 10.9 7.1 2.1 7.9 0.7 2.4 1 1 1 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.9 gi|257386629|ref|YP_003176402.1| - 0.27 11.4 4.0 6.5 6.9 0.4 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 YhfH PF14149.6 gi|257386629|ref|YP_003176402.1| - 0.36 10.8 3.5 0.77 9.8 0.3 2.3 2 0 0 2 2 2 0 YhfH-like protein Zn-ribbon_8 PF09723.10 gi|257386629|ref|YP_003176402.1| - 0.69 10.1 5.2 1 9.5 0.6 2.1 1 1 1 2 2 2 0 Zinc ribbon domain zf-C2H2_3 PF13878.6 gi|257386629|ref|YP_003176402.1| - 4.8 7.1 5.8 16 5.4 0.6 2.2 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO tRNA_NucTransf2 PF09249.11 gi|257386630|ref|YP_003176403.1| - 1.1e-42 144.9 0.0 1.7e-42 144.2 0.0 1.3 1 0 0 1 1 1 1 tRNA nucleotidyltransferase, second domain NTP_transf_2 PF01909.23 gi|257386630|ref|YP_003176403.1| - 1.2e-13 51.2 0.0 2.6e-13 50.1 0.0 1.5 1 0 0 1 1 1 1 Nucleotidyltransferase domain Hist_deacetyl PF00850.19 gi|257386631|ref|YP_003176404.1| - 4e-73 246.6 0.0 5.4e-73 246.1 0.0 1.2 1 0 0 1 1 1 1 Histone deacetylase domain CBFD_NFYB_HMF PF00808.23 gi|257386632|ref|YP_003176405.1| - 7.9e-27 93.3 0.2 3.6e-14 52.8 0.2 2.0 2 0 0 2 2 2 2 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.24 gi|257386632|ref|YP_003176405.1| - 4e-15 56.3 0.8 7.4e-09 36.1 0.3 2.0 1 1 1 2 2 2 2 Core histone H2A/H2B/H3/H4 CENP-T_C PF15511.6 gi|257386632|ref|YP_003176405.1| - 6.4e-08 32.7 0.2 0.00015 21.8 0.2 2.1 2 0 0 2 2 2 2 Centromere kinetochore component CENP-T histone fold TFIID-18kDa PF02269.16 gi|257386632|ref|YP_003176405.1| - 0.00021 21.2 0.2 0.2 11.7 0.1 2.1 2 0 0 2 2 2 2 Transcription initiation factor IID, 18kD subunit DUF1931 PF09123.11 gi|257386632|ref|YP_003176405.1| - 0.0014 18.8 2.8 0.069 13.3 0.1 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF1931) CENP-S PF15630.6 gi|257386632|ref|YP_003176405.1| - 0.0022 18.3 0.8 0.0056 17.0 0.3 1.8 2 0 0 2 2 2 1 CENP-S protein TFIID_20kDa PF03847.13 gi|257386632|ref|YP_003176405.1| - 0.0036 17.7 0.2 0.006 17.1 0.2 1.4 1 0 0 1 1 1 1 Transcription initiation factor TFIID subunit A TAF PF02969.17 gi|257386632|ref|YP_003176405.1| - 0.048 13.8 2.8 6.7 7.0 1.3 2.3 2 1 0 2 2 2 0 TATA box binding protein associated factor (TAF) Herpes_UL35 PF04496.12 gi|257386632|ref|YP_003176405.1| - 0.054 13.8 1.9 0.21 11.9 0.3 2.0 2 0 0 2 2 2 0 Herpesvirus UL35 family Bromo_TP PF07524.13 gi|257386632|ref|YP_003176405.1| - 0.06 13.4 0.3 5.6 7.1 0.1 2.1 2 0 0 2 2 2 0 Bromodomain associated TFIID-31kDa PF02291.15 gi|257386632|ref|YP_003176405.1| - 0.18 11.9 0.6 0.38 10.8 0.5 1.5 2 0 0 2 2 2 0 Transcription initiation factor IID, 31kD subunit tRNA_anti-codon PF01336.25 gi|257386633|ref|YP_003176406.1| - 7.9e-31 105.9 9.3 6.5e-13 48.5 0.4 4.3 4 1 1 5 5 5 3 OB-fold nucleic acid binding domain REPA_OB_2 PF16900.5 gi|257386633|ref|YP_003176406.1| - 2.6e-15 56.1 2.3 3.6e-07 30.0 0.1 3.4 3 0 0 3 3 3 3 Replication protein A OB domain CDC24_OB3 PF17244.2 gi|257386633|ref|YP_003176406.1| - 3.5e-08 33.5 0.0 0.18 11.5 0.0 3.3 3 0 0 3 3 3 3 Cell division control protein 24, OB domain 3 UvrB_inter PF17757.1 gi|257386633|ref|YP_003176406.1| - 0.013 15.6 0.1 9.7 6.4 0.0 3.2 3 0 0 3 3 3 0 UvrB interaction domain Rep_fac-A_C PF08646.10 gi|257386633|ref|YP_003176406.1| - 0.014 15.2 0.0 24 4.7 0.0 3.3 3 0 0 3 3 3 0 Replication factor-A C terminal domain PhyH PF05721.13 gi|257386635|ref|YP_003176408.1| - 1.8e-40 139.5 0.1 2.1e-40 139.2 0.1 1.1 1 0 0 1 1 1 1 Phytanoyl-CoA dioxygenase (PhyH) DUF1479 PF07350.12 gi|257386635|ref|YP_003176408.1| - 0.11 11.2 0.2 5.3 5.7 0.1 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF1479) DUF309 PF03745.14 gi|257386636|ref|YP_003176409.1| - 1.3e-17 63.2 0.3 2.4e-17 62.4 0.3 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF309) OrfB_Zn_ribbon PF07282.11 gi|257386637|ref|YP_003176410.1| - 2.6e-19 68.9 1.1 4.5e-19 68.1 1.1 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.7 gi|257386637|ref|YP_003176410.1| - 0.00048 20.1 4.7 0.00089 19.2 4.7 1.4 1 0 0 1 1 1 1 Transposase zinc-ribbon domain XisH PF08814.10 gi|257386637|ref|YP_003176410.1| - 0.071 13.3 0.1 0.17 12.0 0.1 1.6 1 0 0 1 1 1 0 XisH protein Zn_Tnp_IS91 PF14319.6 gi|257386637|ref|YP_003176410.1| - 0.32 11.0 3.5 0.75 9.9 3.5 1.5 1 0 0 1 1 1 0 Transposase zinc-binding domain DUF2080 PF09853.9 gi|257386638|ref|YP_003176411.1| - 1.8e-06 27.6 0.0 2.1e-06 27.3 0.0 1.1 1 0 0 1 1 1 1 Putative transposon-encoded protein (DUF2080) Y1_Tnp PF01797.16 gi|257386639|ref|YP_003176412.1| - 5.6e-33 113.6 0.1 1.2e-29 102.9 0.0 2.0 2 0 0 2 2 2 2 Transposase IS200 like PRC PF05239.16 gi|257386640|ref|YP_003176413.1| - 0.034 14.2 0.3 0.065 13.3 0.3 1.5 1 1 0 1 1 1 0 PRC-barrel domain Epimerase PF01370.21 gi|257386642|ref|YP_003176415.1| - 3.1e-21 75.9 0.0 3.8e-21 75.7 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|257386642|ref|YP_003176415.1| - 3.9e-13 49.0 0.0 5.7e-13 48.5 0.0 1.3 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family GDP_Man_Dehyd PF16363.5 gi|257386642|ref|YP_003176415.1| - 2.3e-11 43.7 0.0 1.4e-10 41.1 0.0 1.9 2 0 0 2 2 2 1 GDP-mannose 4,6 dehydratase Polysacc_synt_2 PF02719.15 gi|257386642|ref|YP_003176415.1| - 1.1e-10 41.2 1.1 3.4e-07 29.7 0.0 3.0 2 1 1 3 3 3 2 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|257386642|ref|YP_003176415.1| - 1e-09 38.0 0.1 2.2e-09 36.9 0.0 1.5 2 0 0 2 2 2 1 Male sterility protein NAD_binding_10 PF13460.6 gi|257386642|ref|YP_003176415.1| - 7.7e-09 35.7 0.0 1.2e-08 35.1 0.0 1.4 1 1 0 1 1 1 1 NAD(P)H-binding NmrA PF05368.13 gi|257386642|ref|YP_003176415.1| - 0.00099 18.7 0.0 0.0017 18.0 0.0 1.3 1 0 0 1 1 1 1 NmrA-like family RmlD_sub_bind PF04321.17 gi|257386642|ref|YP_003176415.1| - 0.017 14.2 0.0 0.029 13.5 0.0 1.3 1 0 0 1 1 1 0 RmlD substrate binding domain KR PF08659.10 gi|257386642|ref|YP_003176415.1| - 0.079 12.9 0.2 0.54 10.1 0.2 2.3 1 1 0 1 1 1 0 KR domain DHNA PF04038.12 gi|257386643|ref|YP_003176416.1| - 5.9e-38 129.7 0.0 6.6e-38 129.6 0.0 1.0 1 0 0 1 1 1 1 Dihydroneopterin aldolase DUF4013 PF13197.6 gi|257386644|ref|YP_003176417.1| - 1.7e-05 24.7 20.5 1.7e-05 24.7 20.5 3.2 1 1 2 3 3 3 1 Protein of unknown function (DUF4013) Sensor PF13796.6 gi|257386644|ref|YP_003176417.1| - 3.4 7.7 42.4 5.5 7.0 18.8 3.4 1 1 1 2 2 2 0 Putative sensor GPDPase_memb PF10110.9 gi|257386644|ref|YP_003176417.1| - 4.2 6.1 25.9 0.073 11.8 10.3 2.8 1 1 2 3 3 3 0 Membrane domain of glycerophosphoryl diester phosphodiesterase Lectin_N PF03954.14 gi|257386644|ref|YP_003176417.1| - 5.3 6.8 4.7 16 5.2 0.2 2.4 2 0 0 2 2 2 0 Hepatic lectin, N-terminal domain FUSC PF04632.12 gi|257386645|ref|YP_003176418.1| - 3.7 5.9 5.7 4 5.9 5.7 1.1 1 0 0 1 1 1 0 Fusaric acid resistance protein family Creatininase PF02633.14 gi|257386646|ref|YP_003176419.1| - 8e-70 235.0 2.5 9.1e-70 234.8 2.5 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase PQQ_2 PF13360.6 gi|257386648|ref|YP_003176421.1| - 1.2e-30 106.9 23.5 1.4e-12 47.7 4.4 3.2 1 1 2 3 3 3 3 PQQ-like domain PQQ_3 PF13570.6 gi|257386648|ref|YP_003176421.1| - 5.1e-17 61.8 39.2 0.00059 20.3 0.4 8.1 8 0 0 8 8 8 7 PQQ-like domain PQQ PF01011.21 gi|257386648|ref|YP_003176421.1| - 1.4e-12 46.9 15.8 0.078 12.9 0.3 7.8 6 2 1 7 7 7 6 PQQ enzyme repeat TAT_signal PF10518.9 gi|257386648|ref|YP_003176421.1| - 2.8 7.9 10.3 0.23 11.4 0.7 2.6 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence PALP PF00291.25 gi|257386649|ref|YP_003176422.1| - 1.6e-40 139.4 1.0 1.9e-40 139.1 1.0 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Acetyltransf_1 PF00583.25 gi|257386650|ref|YP_003176423.1| - 1.1e-09 38.5 0.0 1.3e-09 38.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|257386650|ref|YP_003176423.1| - 5.9e-07 29.5 0.0 8.1e-07 29.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|257386650|ref|YP_003176423.1| - 7.1e-06 26.4 0.0 8.8e-06 26.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|257386650|ref|YP_003176423.1| - 1.5e-05 24.9 0.0 2.5e-05 24.2 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.7 gi|257386650|ref|YP_003176423.1| - 6.7e-05 23.1 0.0 0.0001 22.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|257386650|ref|YP_003176423.1| - 0.012 16.3 0.0 0.016 15.9 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain ADH_N_2 PF16884.5 gi|257386651|ref|YP_003176424.1| - 2.8e-38 130.2 0.0 5.4e-38 129.2 0.0 1.5 1 0 0 1 1 1 1 N-terminal domain of oxidoreductase ADH_zinc_N PF00107.26 gi|257386651|ref|YP_003176424.1| - 3e-18 66.0 0.2 5.4e-18 65.2 0.2 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_zinc_N_2 PF13602.6 gi|257386651|ref|YP_003176424.1| - 2.3e-09 38.4 0.0 3.5e-09 37.8 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase TACC_C PF05010.14 gi|257386652|ref|YP_003176425.1| - 0.0041 16.9 3.3 0.033 14.0 0.5 2.4 2 1 0 2 2 2 2 Transforming acidic coiled-coil-containing protein (TACC), C-terminal PIN_12 PF16289.5 gi|257386653|ref|YP_003176426.1| - 0.03 14.8 0.0 0.067 13.7 0.0 1.5 1 1 0 1 1 1 0 PIN domain MS_channel PF00924.18 gi|257386654|ref|YP_003176427.1| - 7.9e-19 68.0 1.5 1.3e-18 67.3 1.5 1.3 1 0 0 1 1 1 1 Mechanosensitive ion channel TM_helix PF05552.12 gi|257386654|ref|YP_003176427.1| - 0.00082 19.3 0.6 0.00082 19.3 0.6 1.9 2 0 0 2 2 2 1 Conserved TM helix PTPS PF01242.19 gi|257386656|ref|YP_003176429.1| - 8.4e-22 77.4 0.0 1e-21 77.1 0.0 1.1 1 0 0 1 1 1 1 6-pyruvoyl tetrahydropterin synthase baeRF_family10 PF18854.1 gi|257386656|ref|YP_003176429.1| - 0.03 14.6 0.3 0.054 13.7 0.1 1.5 2 0 0 2 2 2 0 Bacterial archaeo-eukaryotic release factor family 10 Radical_SAM PF04055.21 gi|257386657|ref|YP_003176430.1| - 2e-23 83.6 1.1 1.2e-22 81.1 1.1 2.0 1 1 0 1 1 1 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|257386657|ref|YP_003176430.1| - 6.4e-15 55.3 0.0 1.3e-14 54.3 0.0 1.5 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|257386657|ref|YP_003176430.1| - 2.4e-10 40.8 0.0 4.8e-10 39.9 0.0 1.5 1 0 0 1 1 1 1 4Fe-4S single cluster domain TP_methylase PF00590.20 gi|257386657|ref|YP_003176430.1| - 0.047 13.6 0.3 0.14 12.1 0.3 1.8 1 1 0 1 1 1 0 Tetrapyrrole (Corrin/Porphyrin) Methylases GTP_cyclohydroI PF01227.22 gi|257386658|ref|YP_003176431.1| - 5.3e-50 169.3 0.0 6.5e-50 169.0 0.0 1.0 1 0 0 1 1 1 1 GTP cyclohydrolase I QueF PF14489.6 gi|257386658|ref|YP_003176431.1| - 0.0044 17.1 0.0 0.0074 16.4 0.0 1.4 1 0 0 1 1 1 1 QueF-like protein QueC PF06508.13 gi|257386659|ref|YP_003176432.1| - 4.2e-68 229.0 0.0 4.8e-68 228.8 0.0 1.0 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC ThiI PF02568.14 gi|257386659|ref|YP_003176432.1| - 1.3e-05 24.9 0.0 3.7e-05 23.4 0.0 1.8 2 1 0 2 2 2 1 Thiamine biosynthesis protein (ThiI) tRNA_Me_trans PF03054.16 gi|257386659|ref|YP_003176432.1| - 0.0051 15.6 0.1 0.0068 15.2 0.1 1.2 1 0 0 1 1 1 1 tRNA methyl transferase MGS PF02142.22 gi|257386660|ref|YP_003176433.1| - 1.6e-15 57.0 0.0 2e-15 56.7 0.0 1.1 1 0 0 1 1 1 1 MGS-like domain HalOD1 PF18545.1 gi|257386661|ref|YP_003176434.1| - 1.5e-09 38.0 4.0 1.8e-09 37.7 4.0 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 dUTPase PF00692.19 gi|257386662|ref|YP_003176435.1| - 9.5e-10 38.3 0.0 1.4e-09 37.7 0.0 1.2 1 0 0 1 1 1 1 dUTPase DCD PF06559.11 gi|257386662|ref|YP_003176435.1| - 0.027 13.3 0.0 0.032 13.0 0.0 1.2 1 0 0 1 1 1 0 2'-deoxycytidine 5'-triphosphate deaminase (DCD) Aconitase PF00330.20 gi|257386663|ref|YP_003176436.1| - 2.7e-106 356.3 0.3 1.6e-104 350.5 0.3 2.2 1 1 0 1 1 1 1 Aconitase family (aconitate hydratase) Aconitase_C PF00694.19 gi|257386663|ref|YP_003176436.1| - 3.3e-21 76.0 0.0 6.4e-21 75.0 0.0 1.5 1 0 0 1 1 1 1 Aconitase C-terminal domain DUF521 PF04412.13 gi|257386663|ref|YP_003176436.1| - 0.017 13.8 0.0 0.024 13.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF521) Barwin PF00967.17 gi|257386663|ref|YP_003176436.1| - 0.092 12.6 0.0 0.18 11.6 0.0 1.4 1 0 0 1 1 1 0 Barwin family Acetyltransf_17 PF17668.1 gi|257386664|ref|YP_003176437.1| - 8.9e-19 68.4 7.6 4.4e-18 66.2 4.3 2.4 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|257386664|ref|YP_003176437.1| - 7.3e-17 61.6 0.1 1.8e-16 60.4 0.0 1.7 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain SCP2_2 PF13530.6 gi|257386664|ref|YP_003176437.1| - 3.9e-15 56.1 0.0 6.4e-15 55.4 0.0 1.4 1 0 0 1 1 1 1 Sterol carrier protein domain Acetyltransf_1 PF00583.25 gi|257386664|ref|YP_003176437.1| - 7.6e-10 39.1 0.2 1.7e-06 28.3 0.1 2.3 2 0 0 2 2 2 2 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|257386664|ref|YP_003176437.1| - 3.3e-06 27.4 0.0 1.4e-05 25.4 0.0 1.9 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|257386664|ref|YP_003176437.1| - 0.001 19.0 0.0 0.1 12.5 0.0 2.2 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|257386664|ref|YP_003176437.1| - 0.002 18.2 0.1 0.022 14.9 0.0 2.5 2 1 0 2 2 2 1 GCN5-related N-acetyl-transferase FR47 PF08445.10 gi|257386664|ref|YP_003176437.1| - 0.02 14.8 0.0 0.047 13.7 0.0 1.5 1 0 0 1 1 1 0 FR47-like protein Acetyltransf_1 PF00583.25 gi|257386665|ref|YP_003176438.1| - 1.3e-18 67.4 0.0 1.5e-18 67.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|257386665|ref|YP_003176438.1| - 1.7e-12 47.6 0.0 2.4e-12 47.1 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|257386665|ref|YP_003176438.1| - 3.5e-12 46.4 0.0 4.2e-12 46.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|257386665|ref|YP_003176438.1| - 1.8e-06 27.8 0.0 2.8e-06 27.2 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|257386665|ref|YP_003176438.1| - 2.5e-06 27.6 0.0 4.4e-06 26.8 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|257386665|ref|YP_003176438.1| - 2.2e-05 24.1 0.0 2.7e-05 23.9 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|257386665|ref|YP_003176438.1| - 0.00022 21.9 0.0 0.00031 21.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|257386665|ref|YP_003176438.1| - 0.00092 19.3 0.1 0.0018 18.4 0.1 1.4 1 1 0 1 1 1 1 GCN5-related N-acetyl-transferase Ntox28 PF15605.6 gi|257386665|ref|YP_003176438.1| - 0.018 15.2 0.0 0.026 14.8 0.0 1.2 1 0 0 1 1 1 0 Bacterial toxin 28 Acetyltransf_15 PF17013.5 gi|257386665|ref|YP_003176438.1| - 0.061 12.8 0.0 0.12 11.8 0.0 1.5 1 1 0 1 1 1 0 Putative acetyl-transferase PanZ PF12568.8 gi|257386665|ref|YP_003176438.1| - 0.14 11.9 0.1 0.19 11.4 0.1 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain, PanZ Acetyltransf_4 PF13420.7 gi|257386665|ref|YP_003176438.1| - 0.24 11.5 0.0 0.31 11.1 0.0 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain zf-C2H2_9 PF16293.5 gi|257386666|ref|YP_003176439.1| - 0.00013 21.7 0.0 0.0003 20.6 0.0 1.5 1 0 0 1 1 1 1 C2H2 type zinc-finger (1 copy) ComA PF02679.15 gi|257386666|ref|YP_003176439.1| - 0.032 13.7 0.6 0.039 13.4 0.6 1.1 1 0 0 1 1 1 0 (2R)-phospho-3-sulfolactate synthase (ComA) NUDIX PF00293.28 gi|257386669|ref|YP_003176442.1| - 1.7e-13 50.7 0.4 3e-13 49.9 0.4 1.4 1 0 0 1 1 1 1 NUDIX domain NUDIX PF00293.28 gi|257386670|ref|YP_003176443.1| - 3.7e-17 62.6 0.7 3.7e-17 62.6 0.7 1.9 1 1 1 2 2 2 2 NUDIX domain Rhodanese PF00581.20 gi|257386671|ref|YP_003176444.1| - 8.5e-11 42.3 0.0 9.8e-11 42.1 0.0 1.1 1 0 0 1 1 1 1 Rhodanese-like domain Lactamase_B_3 PF13483.6 gi|257386672|ref|YP_003176445.1| - 9.1e-27 93.9 0.0 1.2e-26 93.6 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|257386672|ref|YP_003176445.1| - 0.00027 20.5 0.1 0.00042 19.9 0.1 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain HEAT_2 PF13646.6 gi|257386673|ref|YP_003176446.1| - 9.3e-05 22.8 2.8 0.0096 16.3 1.7 2.6 1 1 0 2 2 2 2 HEAT repeats HEAT PF02985.22 gi|257386673|ref|YP_003176446.1| - 0.013 15.7 0.0 0.083 13.2 0.0 2.2 2 0 0 2 2 2 0 HEAT repeat NucS PF01939.16 gi|257386674|ref|YP_003176447.1| - 7.7e-62 208.6 0.0 8.8e-62 208.4 0.0 1.0 1 0 0 1 1 1 1 Endonuclease NucS YhcG_C PF06250.11 gi|257386674|ref|YP_003176447.1| - 0.0022 17.8 0.0 0.0038 17.1 0.0 1.3 1 0 0 1 1 1 1 YhcG PDDEXK nuclease domain DZR PF12773.7 gi|257386676|ref|YP_003176449.1| - 3.6e-05 23.7 1.3 5.7e-05 23.1 1.3 1.3 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_15 PF17032.5 gi|257386676|ref|YP_003176449.1| - 0.0023 18.6 1.6 0.0027 18.4 1.6 1.1 1 0 0 1 1 1 1 zinc-ribbon family zinc_ribbon_2 PF13240.6 gi|257386676|ref|YP_003176449.1| - 0.0025 17.5 4.4 0.0042 16.8 4.4 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zf-tcix PF14952.6 gi|257386676|ref|YP_003176449.1| - 0.0055 16.3 3.1 0.0083 15.7 3.1 1.2 1 0 0 1 1 1 1 Putative treble-clef, zinc-finger, Zn-binding DUF2797 PF10977.8 gi|257386676|ref|YP_003176449.1| - 0.091 12.6 0.7 0.11 12.4 0.7 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2797) Spore_YhaL PF14147.6 gi|257386676|ref|YP_003176449.1| - 0.14 11.9 0.0 0.22 11.2 0.0 1.3 1 0 0 1 1 1 0 Sporulation protein YhaL zf-ribbon_3 PF13248.6 gi|257386676|ref|YP_003176449.1| - 0.56 9.7 4.7 0.96 8.9 4.7 1.4 1 0 0 1 1 1 0 zinc-ribbon domain Rhodanese PF00581.20 gi|257386678|ref|YP_003176451.1| - 5.6e-11 42.9 0.0 1e-10 42.1 0.0 1.4 1 0 0 1 1 1 1 Rhodanese-like domain Lactamase_B PF00753.27 gi|257386678|ref|YP_003176451.1| - 1.6e-10 41.3 9.1 2.5e-09 37.4 9.1 2.2 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|257386678|ref|YP_003176451.1| - 0.00081 19.0 0.2 0.0017 17.9 0.2 1.6 1 0 0 1 1 1 1 Beta-lactamase superfamily domain DUF1853 PF08907.11 gi|257386678|ref|YP_003176451.1| - 0.0033 17.2 0.1 0.0093 15.7 0.0 1.6 2 0 0 2 2 2 1 Domain of unknown function (DUF1853) HTH_20 PF12840.7 gi|257386679|ref|YP_003176452.1| - 3.6e-05 23.7 0.1 5.7e-05 23.1 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|257386679|ref|YP_003176452.1| - 0.0021 17.9 0.2 0.0033 17.3 0.2 1.3 1 0 0 1 1 1 1 MarR family Zn-ribbon_8 PF09723.10 gi|257386680|ref|YP_003176453.1| - 0.003 17.6 4.4 0.042 14.0 1.2 2.5 2 0 0 2 2 2 1 Zinc ribbon domain zf-H2C2_5 PF13909.6 gi|257386680|ref|YP_003176453.1| - 0.029 14.1 0.1 0.029 14.1 0.1 1.8 2 0 0 2 2 2 0 C2H2-type zinc-finger domain DZR PF12773.7 gi|257386680|ref|YP_003176453.1| - 0.029 14.4 0.9 1.8 8.7 0.3 2.4 2 0 0 2 2 2 0 Double zinc ribbon Zn_Tnp_IS91 PF14319.6 gi|257386680|ref|YP_003176453.1| - 0.14 12.2 1.2 1.2 9.2 0.2 2.2 2 0 0 2 2 2 0 Transposase zinc-binding domain zinc-ribbons_6 PF07191.12 gi|257386680|ref|YP_003176453.1| - 0.27 11.2 1.8 1.2 9.2 0.3 2.1 2 0 0 2 2 2 0 zinc-ribbons RNHCP PF12647.7 gi|257386680|ref|YP_003176453.1| - 0.31 11.0 3.1 0.59 10.1 0.7 2.2 2 0 0 2 2 2 0 RNHCP domain zf_UBZ PF18439.1 gi|257386680|ref|YP_003176453.1| - 0.66 9.6 6.0 25 4.6 0.2 3.3 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger zinc_ribbon_4 PF13717.6 gi|257386680|ref|YP_003176453.1| - 0.69 9.9 6.2 4 7.4 0.1 3.1 3 0 0 3 3 3 0 zinc-ribbon domain MqsA_antitoxin PF15731.5 gi|257386680|ref|YP_003176453.1| - 0.75 9.9 2.7 22 5.2 0.2 2.7 2 1 0 2 2 2 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA zf-C4_Topoisom PF01396.19 gi|257386680|ref|YP_003176453.1| - 1.6 8.5 5.5 61 3.5 0.2 3.1 2 1 1 3 3 3 0 Topoisomerase DNA binding C4 zinc finger TF_Zn_Ribbon PF08271.12 gi|257386680|ref|YP_003176453.1| - 2.4 7.8 9.2 21 4.7 0.4 4.0 2 1 2 4 4 4 0 TFIIB zinc-binding zf-RING_7 PF02591.15 gi|257386680|ref|YP_003176453.1| - 2.6 8.3 8.9 18 5.6 0.5 3.5 3 0 0 3 3 3 0 C4-type zinc ribbon domain Auto_anti-p27 PF06677.12 gi|257386680|ref|YP_003176453.1| - 3 8.1 4.4 4.4 7.5 1.0 2.2 2 0 0 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Zn_Tnp_IS1595 PF12760.7 gi|257386680|ref|YP_003176453.1| - 6 6.9 6.8 14 5.8 3.4 2.8 2 1 0 2 2 2 0 Transposase zinc-ribbon domain DUF5611 PF18446.1 gi|257386681|ref|YP_003176454.1| - 5.8e-26 91.3 0.4 6.7e-26 91.1 0.4 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF5611) ABC2_membrane PF01061.24 gi|257386682|ref|YP_003176455.1| - 8.4e-27 94.0 20.4 1e-26 93.7 20.4 1.1 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|257386682|ref|YP_003176455.1| - 0.3 10.1 21.2 0.15 11.1 19.0 1.4 1 1 0 1 1 1 0 ABC-2 family transporter protein ABC_tran PF00005.27 gi|257386683|ref|YP_003176456.1| - 1.3e-32 113.2 0.0 4e-32 111.6 0.0 1.7 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|257386683|ref|YP_003176456.1| - 2.8e-14 53.7 0.7 1.4e-08 34.9 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|257386683|ref|YP_003176456.1| - 5.1e-05 23.9 0.0 0.00019 22.1 0.0 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF4162) AAA_30 PF13604.6 gi|257386683|ref|YP_003176456.1| - 0.00032 20.5 0.3 0.0012 18.6 0.0 2.1 2 1 0 2 2 2 1 AAA domain IstB_IS21 PF01695.17 gi|257386683|ref|YP_003176456.1| - 0.0019 18.0 0.1 2.1 8.0 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_24 PF13479.6 gi|257386683|ref|YP_003176456.1| - 0.0079 15.9 0.0 0.051 13.3 0.0 2.0 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.6 gi|257386683|ref|YP_003176456.1| - 0.016 15.7 0.4 0.026 15.0 0.4 1.2 1 0 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|257386683|ref|YP_003176456.1| - 0.039 13.6 0.0 0.37 10.4 0.0 2.1 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain RsgA_GTPase PF03193.16 gi|257386683|ref|YP_003176456.1| - 0.039 13.8 0.1 0.09 12.7 0.1 1.5 1 0 0 1 1 1 0 RsgA GTPase AAA_29 PF13555.6 gi|257386683|ref|YP_003176456.1| - 0.054 13.2 0.2 0.11 12.2 0.2 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain MobB PF03205.14 gi|257386683|ref|YP_003176456.1| - 0.069 13.1 0.0 0.22 11.4 0.0 1.9 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B SMC_N PF02463.19 gi|257386683|ref|YP_003176456.1| - 0.078 12.4 0.0 2.3 7.6 0.1 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain MMR_HSR1 PF01926.23 gi|257386683|ref|YP_003176456.1| - 0.093 12.8 0.0 0.32 11.1 0.0 1.9 1 0 0 1 1 1 0 50S ribosome-binding GTPase SepF PF04472.12 gi|257386684|ref|YP_003176457.1| - 1.4e-14 54.1 2.0 2e-14 53.6 2.0 1.3 1 0 0 1 1 1 1 Cell division protein SepF CID_GANP PF16766.5 gi|257386684|ref|YP_003176457.1| - 0.019 15.2 0.2 0.076 13.2 0.1 1.9 1 1 1 2 2 2 0 Binding region of GANP to ENY2 Lar_N PF09861.9 gi|257386684|ref|YP_003176457.1| - 0.019 14.1 0.2 0.022 13.9 0.2 1.3 1 0 0 1 1 1 0 Lactate racemase N-terminal domain LAX PF15681.5 gi|257386684|ref|YP_003176457.1| - 0.021 13.6 0.1 0.023 13.5 0.1 1.0 1 0 0 1 1 1 0 Lymphocyte activation family X Poty_coat PF00767.18 gi|257386684|ref|YP_003176457.1| - 0.059 12.9 0.3 0.074 12.6 0.3 1.1 1 0 0 1 1 1 0 Potyvirus coat protein DUF1028 PF06267.12 gi|257386685|ref|YP_003176458.1| - 8.7e-67 224.7 0.6 1.1e-66 224.3 0.6 1.1 1 0 0 1 1 1 1 Family of unknown function (DUF1028) SIMPL PF04402.14 gi|257386686|ref|YP_003176459.1| - 6.2e-37 128.0 12.8 7.2e-37 127.8 12.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF541) DUF389 PF04087.14 gi|257386687|ref|YP_003176460.1| - 5.9e-37 126.9 15.8 5.9e-37 126.9 15.8 2.3 3 0 0 3 3 3 1 Domain of unknown function (DUF389) PKD PF00801.20 gi|257386688|ref|YP_003176461.1| - 6.3e-73 240.6 38.4 6.7e-16 57.9 1.9 6.2 5 0 0 5 5 5 5 PKD domain BiPBP_C PF06832.12 gi|257386688|ref|YP_003176461.1| - 1.5e-06 28.2 0.5 4.1 7.5 0.0 5.3 5 0 0 5 5 5 2 Penicillin-Binding Protein C-terminus Family MG2 PF01835.19 gi|257386688|ref|YP_003176461.1| - 4.8e-06 26.9 11.0 4.7 7.7 0.1 6.1 5 1 0 5 5 5 3 MG2 domain ChitinaseA_N PF08329.10 gi|257386688|ref|YP_003176461.1| - 8.4e-06 25.5 15.4 0.1 12.2 0.5 4.8 5 0 0 5 5 5 4 Chitinase A, N-terminal domain CBM_5_12_2 PF14600.6 gi|257386688|ref|YP_003176461.1| - 1.2e-05 25.2 14.8 0.0028 17.6 3.7 2.9 2 0 0 2 2 2 2 Cellulose-binding domain PKD_3 PF16820.5 gi|257386688|ref|YP_003176461.1| - 5.4e-05 22.9 12.1 3.7 7.4 0.1 5.5 5 0 0 5 5 5 4 PKD-like domain DUF4625 PF15418.6 gi|257386688|ref|YP_003176461.1| - 0.00032 21.0 11.2 1.8 8.8 0.1 6.0 6 0 0 6 6 6 2 Domain of unknown function (DUF4625) Big_3_4 PF13754.6 gi|257386688|ref|YP_003176461.1| - 0.00055 19.6 5.7 1.1 9.0 0.0 4.6 5 0 0 5 5 4 1 Domain of unknown function CBM_5_12 PF02839.14 gi|257386688|ref|YP_003176461.1| - 0.0007 20.0 11.2 0.027 15.0 2.8 3.2 2 0 0 2 2 2 2 Carbohydrate binding domain Copper-bind PF00127.20 gi|257386688|ref|YP_003176461.1| - 0.0011 19.3 2.7 0.022 15.2 0.0 3.8 4 0 0 4 4 4 1 Copper binding proteins, plastocyanin/azurin family Y_Y_Y PF07495.13 gi|257386688|ref|YP_003176461.1| - 0.0012 18.8 2.8 7.6 6.6 0.0 5.0 5 0 0 5 5 5 1 Y_Y_Y domain REJ PF02010.15 gi|257386688|ref|YP_003176461.1| - 0.0049 15.7 22.5 2 7.1 0.9 7.1 3 3 1 4 4 4 3 REJ domain TcfC PF16967.5 gi|257386688|ref|YP_003176461.1| - 0.014 14.8 0.2 12 5.5 0.0 4.1 4 0 0 4 4 4 0 E-set like domain DUF5011 PF16403.5 gi|257386688|ref|YP_003176461.1| - 0.12 12.5 26.2 2.5 8.3 0.3 5.7 5 0 0 5 5 5 0 Domain of unknown function (DUF5011) Cadherin PF00028.17 gi|257386688|ref|YP_003176461.1| - 0.44 11.0 12.1 58 4.2 0.2 5.3 5 0 0 5 5 5 0 Cadherin domain GFO_IDH_MocA PF01408.22 gi|257386689|ref|YP_003176462.1| - 1.3e-17 64.7 0.5 3.3e-17 63.4 0.2 1.8 2 0 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA PF01408.22 gi|257386690|ref|YP_003176463.1| - 1.2e-29 103.5 0.2 2e-29 102.8 0.2 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold CoA_binding PF02629.19 gi|257386690|ref|YP_003176463.1| - 0.059 14.1 0.1 0.15 12.7 0.1 1.7 1 0 0 1 1 1 0 CoA binding domain NAD_binding_3 PF03447.16 gi|257386690|ref|YP_003176463.1| - 0.062 14.0 0.1 0.13 13.0 0.1 1.5 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|257386690|ref|YP_003176463.1| - 0.069 13.7 0.1 0.16 12.5 0.1 1.6 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent MMR_HSR1 PF01926.23 gi|257386691|ref|YP_003176464.1| - 4.6e-18 65.4 0.0 6.7e-18 64.8 0.0 1.4 1 1 0 1 1 1 1 50S ribosome-binding GTPase FeoB_N PF02421.18 gi|257386691|ref|YP_003176464.1| - 1.6e-12 47.2 0.2 3.3e-11 43.0 0.2 2.0 1 1 0 1 1 1 1 Ferrous iron transport protein B RsgA_GTPase PF03193.16 gi|257386691|ref|YP_003176464.1| - 1.5e-06 28.2 0.1 0.014 15.4 0.0 2.8 2 1 0 2 2 2 2 RsgA GTPase GTP_EFTU PF00009.27 gi|257386691|ref|YP_003176464.1| - 3.9e-06 26.6 0.0 0.00074 19.1 0.0 2.2 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain AIG1 PF04548.16 gi|257386691|ref|YP_003176464.1| - 0.00037 19.9 0.0 0.00051 19.4 0.0 1.2 1 0 0 1 1 1 1 AIG1 family Roc PF08477.13 gi|257386691|ref|YP_003176464.1| - 0.0082 16.4 0.0 0.015 15.5 0.0 1.4 1 0 0 1 1 1 1 Ras of Complex, Roc, domain of DAPkinase ABC_tran PF00005.27 gi|257386691|ref|YP_003176464.1| - 0.016 15.7 0.0 0.039 14.5 0.0 1.6 2 0 0 2 2 2 0 ABC transporter Dynamin_N PF00350.23 gi|257386691|ref|YP_003176464.1| - 0.018 15.1 0.1 0.055 13.5 0.1 1.6 1 1 1 2 2 2 0 Dynamin family MeaB PF03308.16 gi|257386691|ref|YP_003176464.1| - 0.018 14.0 0.2 3.3 6.6 0.0 2.2 2 0 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_22 PF13401.6 gi|257386691|ref|YP_003176464.1| - 0.063 13.5 0.1 0.22 11.8 0.1 2.2 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|257386691|ref|YP_003176464.1| - 0.081 13.3 0.0 0.17 12.3 0.0 1.5 1 0 0 1 1 1 0 RNA helicase Arf PF00025.21 gi|257386691|ref|YP_003176464.1| - 0.11 12.0 0.0 0.45 10.0 0.0 1.8 2 0 0 2 2 2 0 ADP-ribosylation factor family TIP49 PF06068.13 gi|257386691|ref|YP_003176464.1| - 0.12 11.6 0.1 0.21 10.8 0.1 1.3 1 0 0 1 1 1 0 TIP49 P-loop domain PduV-EutP PF10662.9 gi|257386691|ref|YP_003176464.1| - 0.13 12.0 0.0 0.34 10.6 0.0 1.7 2 1 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation AAA_29 PF13555.6 gi|257386691|ref|YP_003176464.1| - 0.14 12.0 0.0 0.24 11.1 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Ras PF00071.22 gi|257386691|ref|YP_003176464.1| - 0.17 11.4 0.1 0.46 10.1 0.0 1.7 2 0 0 2 2 2 0 Ras family HATPase_c PF02518.26 gi|257386692|ref|YP_003176465.1| - 9.6e-11 42.2 0.0 2.3e-10 41.0 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|257386692|ref|YP_003176465.1| - 3.5e-08 33.7 0.2 1.1e-07 32.1 0.0 2.0 2 0 0 2 2 2 1 PAS fold DUF1349 PF07081.11 gi|257386692|ref|YP_003176465.1| - 2.6e-06 27.3 0.0 5e-06 26.4 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1349) HisKA PF00512.25 gi|257386692|ref|YP_003176465.1| - 0.0056 16.7 1.0 0.0095 16.0 0.2 1.8 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.6 gi|257386692|ref|YP_003176465.1| - 0.013 15.3 0.0 0.026 14.3 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OKR_DC_1_N PF03709.15 gi|257386692|ref|YP_003176465.1| - 0.044 14.1 0.2 0.11 12.8 0.2 1.6 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain SUI1 PF01253.22 gi|257386693|ref|YP_003176466.1| - 1.8e-22 79.6 0.0 2.2e-22 79.4 0.0 1.1 1 0 0 1 1 1 1 Translation initiation factor SUI1 Img2 PF05046.14 gi|257386693|ref|YP_003176466.1| - 0.0016 18.7 0.0 0.0023 18.2 0.0 1.5 1 1 0 1 1 1 1 Mitochondrial large subunit ribosomal protein (Img2) DTW PF03942.15 gi|257386693|ref|YP_003176466.1| - 0.0074 16.0 0.5 0.0093 15.7 0.5 1.1 1 0 0 1 1 1 1 DTW domain Transglut_core PF01841.19 gi|257386694|ref|YP_003176467.1| - 5.9e-29 100.8 0.7 1.4e-28 99.6 0.7 1.7 1 0 0 1 1 1 1 Transglutaminase-like superfamily Transglut_core3 PF13471.6 gi|257386694|ref|YP_003176467.1| - 0.0012 18.7 1.5 0.004 17.0 0.0 2.6 2 0 0 2 2 2 1 Transglutaminase-like superfamily DUF3488 PF11992.8 gi|257386694|ref|YP_003176467.1| - 0.028 13.4 14.2 1.3 7.9 14.2 2.5 1 1 0 1 1 1 0 Domain of unknown function (DUF3488) T2SSK PF03934.13 gi|257386694|ref|YP_003176467.1| - 0.072 12.5 0.1 0.13 11.6 0.1 1.3 1 0 0 1 1 1 0 Type II secretion system (T2SS), protein K DUF58 PF01882.18 gi|257386695|ref|YP_003176468.1| - 1.7e-13 50.6 0.0 4.5e-13 49.3 0.0 1.8 1 0 0 1 1 1 1 Protein of unknown function DUF58 RHS_repeat PF05593.14 gi|257386695|ref|YP_003176468.1| - 5.9 7.5 6.9 19 5.9 0.1 3.2 3 0 0 3 3 3 0 RHS Repeat AAA_3 PF07726.11 gi|257386696|ref|YP_003176469.1| - 9e-61 203.5 0.3 1.5e-60 202.8 0.3 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|257386696|ref|YP_003176469.1| - 1.5e-20 72.8 3.9 3e-20 71.8 3.0 2.0 2 0 0 2 2 2 1 AAA lid domain AAA_5 PF07728.14 gi|257386696|ref|YP_003176469.1| - 4e-13 49.5 0.0 9.6e-13 48.3 0.0 1.7 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|257386696|ref|YP_003176469.1| - 2.1e-07 31.4 0.0 3.6e-07 30.7 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|257386696|ref|YP_003176469.1| - 1.4e-05 24.8 0.1 0.00019 21.2 0.1 2.1 1 1 0 1 1 1 1 Sigma-54 interaction domain MCM PF00493.23 gi|257386696|ref|YP_003176469.1| - 2.1e-05 23.7 0.0 3.2e-05 23.1 0.0 1.3 1 0 0 1 1 1 1 MCM P-loop domain Mg_chelatase PF01078.21 gi|257386696|ref|YP_003176469.1| - 8.4e-05 22.0 0.6 0.0019 17.7 0.1 2.2 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI RuvB_N PF05496.12 gi|257386696|ref|YP_003176469.1| - 0.00017 21.4 0.0 0.0016 18.2 0.0 2.2 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_2 PF07724.14 gi|257386696|ref|YP_003176469.1| - 0.074 13.2 0.0 0.26 11.4 0.0 1.8 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) PhnA_Zn_Ribbon PF08274.12 gi|257386697|ref|YP_003176470.1| - 0.0026 17.7 2.8 0.0035 17.3 2.8 1.2 1 0 0 1 1 1 1 PhnA Zinc-Ribbon A2L_zn_ribbon PF08792.10 gi|257386697|ref|YP_003176470.1| - 0.14 11.9 3.6 4.1 7.2 0.1 2.2 2 0 0 2 2 2 0 A2L zinc ribbon domain PD40 PF07676.12 gi|257386697|ref|YP_003176470.1| - 0.2 11.6 1.5 5 7.2 0.0 2.4 2 1 0 2 2 2 0 WD40-like Beta Propeller Repeat Zn-ribbon_8 PF09723.10 gi|257386699|ref|YP_003176472.1| - 2.4e-05 24.4 3.6 0.011 15.9 0.5 2.1 2 0 0 2 2 2 2 Zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|257386699|ref|YP_003176472.1| - 9.6e-05 22.2 1.3 0.0001 22.2 1.3 1.0 1 0 0 1 1 1 1 Putative transposase DNA-binding domain zf_UBZ PF18439.1 gi|257386699|ref|YP_003176472.1| - 0.00017 21.1 0.9 0.064 12.9 0.1 2.0 2 0 0 2 2 2 2 Ubiquitin-Binding Zinc Finger zinc-ribbons_6 PF07191.12 gi|257386699|ref|YP_003176472.1| - 0.00028 20.8 0.3 0.00032 20.6 0.3 1.0 1 0 0 1 1 1 1 zinc-ribbons Zn_Tnp_IS1595 PF12760.7 gi|257386699|ref|YP_003176472.1| - 0.00046 20.1 0.2 0.00054 19.9 0.2 1.1 1 0 0 1 1 1 1 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|257386699|ref|YP_003176472.1| - 0.0011 18.4 4.9 0.0013 18.2 4.9 1.2 1 0 0 1 1 1 1 TFIIB zinc-binding DZR PF12773.7 gi|257386699|ref|YP_003176472.1| - 0.0012 18.8 0.3 0.0016 18.4 0.3 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|257386699|ref|YP_003176472.1| - 0.0016 17.8 1.5 0.15 11.6 0.4 2.1 2 0 0 2 2 2 1 zinc-ribbon domain RNA_POL_M_15KD PF02150.16 gi|257386699|ref|YP_003176472.1| - 0.0024 17.7 1.6 0.006 16.4 1.6 1.6 1 1 0 1 1 1 1 RNA polymerases M/15 Kd subunit zf-C4_Topoisom PF01396.19 gi|257386699|ref|YP_003176472.1| - 0.0074 16.1 1.4 0.29 10.9 0.1 2.1 2 0 0 2 2 2 1 Topoisomerase DNA binding C4 zinc finger PhnA_Zn_Ribbon PF08274.12 gi|257386699|ref|YP_003176472.1| - 0.0092 15.9 2.5 0.02 14.8 2.5 1.6 1 1 0 1 1 1 1 PhnA Zinc-Ribbon IBR PF01485.21 gi|257386699|ref|YP_003176472.1| - 0.011 15.9 1.4 0.014 15.6 1.4 1.0 1 0 0 1 1 1 0 IBR domain, a half RING-finger domain zf-C2H2 PF00096.26 gi|257386699|ref|YP_003176472.1| - 0.013 16.0 2.1 0.4 11.2 0.1 2.1 2 0 0 2 2 2 0 Zinc finger, C2H2 type PADR1 PF08063.12 gi|257386699|ref|YP_003176472.1| - 0.019 14.7 1.5 0.022 14.5 1.5 1.1 1 0 0 1 1 1 0 PADR1 (NUC008) domain HypA PF01155.19 gi|257386699|ref|YP_003176472.1| - 0.022 14.8 0.8 0.027 14.5 0.8 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf_Rg PF17915.1 gi|257386699|ref|YP_003176472.1| - 0.022 14.1 3.5 0.043 13.2 3.5 1.6 1 1 1 2 2 2 0 Reverse gyrase zinc finger zf-C2H2_4 PF13894.6 gi|257386699|ref|YP_003176472.1| - 0.028 15.2 1.4 2.4 9.2 0.1 2.1 2 0 0 2 2 2 0 C2H2-type zinc finger Rubredoxin_2 PF18073.1 gi|257386699|ref|YP_003176472.1| - 0.046 13.5 4.1 0.56 10.0 0.2 2.1 2 0 0 2 2 2 0 Rubredoxin metal binding domain TackOD1 PF18551.1 gi|257386699|ref|YP_003176472.1| - 0.059 13.0 0.2 0.064 12.9 0.2 1.1 1 0 0 1 1 1 0 Thaumarchaeal output domain 1 Ogr_Delta PF04606.12 gi|257386699|ref|YP_003176472.1| - 0.081 12.9 2.6 1.2 9.2 0.6 2.0 1 1 1 2 2 2 0 Ogr/Delta-like zinc finger zf-H2C2_2 PF13465.6 gi|257386699|ref|YP_003176472.1| - 0.083 13.4 3.4 0.38 11.3 0.1 2.1 1 1 1 2 2 2 0 Zinc-finger double domain DNA_ligase_ZBD PF03119.16 gi|257386699|ref|YP_003176472.1| - 0.088 12.8 1.3 0.088 12.8 1.3 1.9 1 1 1 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain zf-TFIIB PF13453.6 gi|257386699|ref|YP_003176472.1| - 0.13 11.7 3.5 0.21 10.9 3.5 1.4 1 1 0 1 1 1 0 Transcription factor zinc-finger TFIIS_C PF01096.18 gi|257386699|ref|YP_003176472.1| - 0.13 12.1 3.6 3.6 7.5 0.1 2.1 1 1 1 2 2 2 0 Transcription factor S-II (TFIIS) zf-IS66 PF13005.7 gi|257386699|ref|YP_003176472.1| - 0.17 12.3 4.8 1.1 9.8 0.6 2.1 1 1 1 2 2 2 0 zinc-finger binding domain of transposase IS66 zf-Mss51 PF13824.6 gi|257386699|ref|YP_003176472.1| - 0.18 11.9 4.6 0.32 11.1 4.6 1.4 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 zf-HYPF PF07503.12 gi|257386699|ref|YP_003176472.1| - 0.18 11.6 5.6 1.3 8.8 0.4 2.1 2 0 0 2 2 2 0 HypF finger zinc_ribbon_5 PF13719.6 gi|257386699|ref|YP_003176472.1| - 0.19 11.5 2.2 1.9 8.3 0.2 2.1 2 0 0 2 2 2 0 zinc-ribbon domain YhfH PF14149.6 gi|257386699|ref|YP_003176472.1| - 0.19 11.7 4.1 2.6 8.1 0.3 2.1 1 1 1 2 2 2 0 YhfH-like protein DpnI PF06044.12 gi|257386699|ref|YP_003176472.1| - 0.2 11.3 0.5 0.21 11.2 0.5 1.1 1 0 0 1 1 1 0 Dam-replacing family Lar_restr_allev PF14354.6 gi|257386699|ref|YP_003176472.1| - 0.37 11.2 3.6 0.79 10.1 3.6 1.6 1 1 0 1 1 1 0 Restriction alleviation protein Lar A2L_zn_ribbon PF08792.10 gi|257386699|ref|YP_003176472.1| - 0.37 10.5 4.9 0.64 9.8 4.9 1.4 1 1 0 1 1 1 0 A2L zinc ribbon domain DUF1272 PF06906.11 gi|257386699|ref|YP_003176472.1| - 0.37 10.9 5.3 0.36 11.0 1.1 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF1272) DNA_RNApol_7kD PF03604.13 gi|257386699|ref|YP_003176472.1| - 0.42 10.3 3.1 1.6 8.5 3.2 1.8 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit DUF983 PF06170.12 gi|257386699|ref|YP_003176472.1| - 0.73 10.3 3.1 9.3 6.7 0.4 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF983) CpXC PF14353.6 gi|257386699|ref|YP_003176472.1| - 0.79 9.8 3.1 5.7 7.0 0.3 2.0 1 1 1 2 2 2 0 CpXC protein Nop10p PF04135.12 gi|257386699|ref|YP_003176472.1| - 1.4 9.0 3.4 7.1 6.8 1.5 2.0 1 1 1 2 2 2 0 Nucleolar RNA-binding protein, Nop10p family zinc_ribbon_9 PF14369.6 gi|257386699|ref|YP_003176472.1| - 2.2 8.6 7.7 4.9 7.5 1.4 2.1 1 1 1 2 2 2 0 zinc-ribbon ADK_lid PF05191.14 gi|257386699|ref|YP_003176472.1| - 8.3 6.5 8.5 1.6e+02 2.4 8.5 2.1 1 1 0 1 1 1 0 Adenylate kinase, active site lid Acetyltransf_1 PF00583.25 gi|257386700|ref|YP_003176473.1| - 1.5e-12 47.8 0.1 1.7e-12 47.6 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|257386700|ref|YP_003176473.1| - 3.1e-10 40.1 0.0 4e-10 39.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|257386700|ref|YP_003176473.1| - 3.3e-08 33.8 0.0 4e-08 33.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|257386700|ref|YP_003176473.1| - 3.6e-08 33.7 0.1 5.6e-08 33.1 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|257386700|ref|YP_003176473.1| - 9.5e-08 31.9 0.0 1.5e-07 31.3 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_3 PF13302.7 gi|257386700|ref|YP_003176473.1| - 3.7e-06 27.6 0.1 4.5e-06 27.4 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|257386700|ref|YP_003176473.1| - 0.0072 16.4 0.1 0.083 13.0 0.1 2.0 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|257386700|ref|YP_003176473.1| - 0.12 12.6 5.3 0.1 12.8 1.6 1.9 1 1 1 2 2 2 0 Acetyltransferase (GNAT) domain MCM PF00493.23 gi|257386701|ref|YP_003176474.1| - 4.3e-72 241.8 0.0 9.2e-72 240.8 0.0 1.5 1 0 0 1 1 1 1 MCM P-loop domain MCM_lid PF17855.1 gi|257386701|ref|YP_003176474.1| - 1.6e-22 79.8 0.6 3.7e-22 78.5 0.6 1.7 1 0 0 1 1 1 1 MCM AAA-lid domain Mg_chelatase PF01078.21 gi|257386701|ref|YP_003176474.1| - 7.4e-11 41.8 0.0 4.6e-06 26.2 0.0 2.4 1 1 1 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_5 PF07728.14 gi|257386701|ref|YP_003176474.1| - 4.2e-10 39.7 0.0 2e-09 37.6 0.0 2.3 2 1 0 2 2 1 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.26 gi|257386701|ref|YP_003176474.1| - 9.7e-05 22.1 0.0 0.00098 18.9 0.0 2.2 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA PF00004.29 gi|257386701|ref|YP_003176474.1| - 0.0022 18.4 0.6 0.011 16.2 0.0 2.5 3 0 0 3 3 3 1 ATPase family associated with various cellular activities (AAA) HTH_20 PF12840.7 gi|257386701|ref|YP_003176474.1| - 0.0047 17.0 0.3 0.048 13.7 0.1 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain AAA_30 PF13604.6 gi|257386701|ref|YP_003176474.1| - 0.0056 16.4 0.2 0.016 14.9 0.2 1.8 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|257386701|ref|YP_003176474.1| - 0.012 16.0 0.0 0.012 16.0 0.0 2.9 3 1 1 4 4 3 0 AAA ATPase domain ABC_tran PF00005.27 gi|257386701|ref|YP_003176474.1| - 0.017 15.6 0.7 0.19 12.2 0.0 2.9 2 1 2 4 4 3 0 ABC transporter AAA_22 PF13401.6 gi|257386701|ref|YP_003176474.1| - 0.037 14.3 0.1 0.35 11.1 0.0 2.6 3 0 0 3 3 3 0 AAA domain AAA_3 PF07726.11 gi|257386701|ref|YP_003176474.1| - 0.037 13.9 0.0 0.19 11.6 0.0 2.2 2 1 0 2 2 1 0 ATPase family associated with various cellular activities (AAA) HTH_11 PF08279.12 gi|257386701|ref|YP_003176474.1| - 0.063 13.2 0.2 0.14 12.1 0.2 1.6 1 0 0 1 1 1 0 HTH domain RuvB_N PF05496.12 gi|257386701|ref|YP_003176474.1| - 0.087 12.6 0.0 0.63 9.8 0.0 2.2 1 1 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain NACHT PF05729.12 gi|257386701|ref|YP_003176474.1| - 0.088 12.7 0.0 0.25 11.3 0.0 1.7 1 0 0 1 1 1 0 NACHT domain G-alpha PF00503.20 gi|257386701|ref|YP_003176474.1| - 0.15 11.2 0.0 0.42 9.7 0.0 1.7 2 0 0 2 2 2 0 G-protein alpha subunit AAA_29 PF13555.6 gi|257386701|ref|YP_003176474.1| - 0.16 11.8 0.0 0.4 10.4 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain RNA_helicase PF00910.22 gi|257386701|ref|YP_003176474.1| - 0.17 12.3 0.1 0.9 10.0 0.0 2.1 2 0 0 2 2 2 0 RNA helicase Uds1 PF15456.6 gi|257386701|ref|YP_003176474.1| - 0.49 10.6 8.3 1.2 9.3 3.0 2.7 2 0 0 2 2 2 0 Up-regulated During Septation NPV_P10 PF05531.12 gi|257386701|ref|YP_003176474.1| - 1.9 9.0 4.1 2.7 8.5 0.2 2.8 3 0 0 3 3 3 0 Nucleopolyhedrovirus P10 protein DivIC PF04977.15 gi|257386701|ref|YP_003176474.1| - 3.1 7.6 10.4 0.26 11.1 3.7 2.4 2 0 0 2 2 2 0 Septum formation initiator NERD PF08378.11 gi|257386702|ref|YP_003176475.1| - 2.3e-06 28.0 0.0 8.1e-06 26.3 0.0 1.9 1 0 0 1 1 1 1 Nuclease-related domain HPS6 PF15702.5 gi|257386702|ref|YP_003176475.1| - 0.21 9.6 0.0 0.29 9.1 0.0 1.1 1 0 0 1 1 1 0 Hermansky-Pudlak syndrome 6 protein Sulfatase PF00884.23 gi|257386703|ref|YP_003176476.1| - 4.1e-58 197.2 0.0 5.2e-58 196.9 0.0 1.1 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 gi|257386703|ref|YP_003176476.1| - 5.8e-16 59.0 1.5 1.1e-13 51.6 1.5 2.5 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase DUF229 PF02995.17 gi|257386703|ref|YP_003176476.1| - 0.0052 15.5 0.0 0.0083 14.8 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF229) Metalloenzyme PF01676.18 gi|257386703|ref|YP_003176476.1| - 0.18 11.2 0.0 0.37 10.1 0.0 1.4 1 0 0 1 1 1 0 Metalloenzyme superfamily Phage_holin_2_4 PF16082.5 gi|257386704|ref|YP_003176477.1| - 6.6 6.5 8.7 20 5.0 5.3 2.4 2 0 0 2 2 2 0 Bacteriophage holin family, superfamily II-like DUF3040 PF11239.8 gi|257386704|ref|YP_003176477.1| - 6.8 7.0 24.5 2.1 8.7 5.2 2.7 1 1 2 3 3 3 0 Protein of unknown function (DUF3040) GFO_IDH_MocA PF01408.22 gi|257386705|ref|YP_003176478.1| - 6.3e-15 56.1 0.0 9.7e-15 55.4 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold Fer4_20 PF14691.6 gi|257386705|ref|YP_003176478.1| - 0.0054 16.5 0.0 0.0091 15.8 0.0 1.3 1 0 0 1 1 1 1 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster NAD_binding_3 PF03447.16 gi|257386705|ref|YP_003176478.1| - 0.054 14.2 0.1 0.084 13.5 0.1 1.3 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain SH3_15 PF18346.1 gi|257386705|ref|YP_003176478.1| - 0.13 12.6 0.0 1.2 9.5 0.0 2.2 2 0 0 2 2 2 0 Mind bomb SH3 repeat domain DUF1648 PF07853.11 gi|257386706|ref|YP_003176479.1| - 0.011 15.3 0.6 0.051 13.2 0.6 2.1 1 1 0 1 1 1 0 Protein of unknown function (DUF1648) HTH_20 PF12840.7 gi|257386707|ref|YP_003176480.1| - 2.3e-09 37.2 0.1 3.7e-09 36.5 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|257386707|ref|YP_003176480.1| - 0.00018 21.4 0.1 0.00031 20.6 0.1 1.5 1 0 0 1 1 1 1 MarR family PadR PF03551.14 gi|257386707|ref|YP_003176480.1| - 0.0015 18.4 0.0 0.0024 17.8 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_11 PF08279.12 gi|257386707|ref|YP_003176480.1| - 0.0061 16.5 0.0 0.0099 15.8 0.0 1.3 1 0 0 1 1 1 1 HTH domain DprA_WH PF17782.1 gi|257386707|ref|YP_003176480.1| - 0.0087 16.2 0.5 0.017 15.3 0.5 1.5 1 0 0 1 1 1 1 DprA winged helix domain TrmB PF01978.19 gi|257386707|ref|YP_003176480.1| - 0.014 15.3 0.0 0.02 14.7 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_5 PF01022.20 gi|257386707|ref|YP_003176480.1| - 0.014 15.3 0.0 0.021 14.7 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family BaxI_1 PF12811.7 gi|257386708|ref|YP_003176481.1| - 0.0091 15.6 2.0 0.011 15.4 2.0 1.0 1 0 0 1 1 1 1 Bax inhibitor 1 like Tmemb_14 PF03647.13 gi|257386708|ref|YP_003176481.1| - 0.042 14.6 1.6 0.053 14.3 1.6 1.4 1 1 0 1 1 1 0 Transmembrane proteins 14C Yip1 PF04893.17 gi|257386708|ref|YP_003176481.1| - 0.11 12.2 7.1 0.15 11.7 7.1 1.2 1 0 0 1 1 1 0 Yip1 domain GFO_IDH_MocA PF01408.22 gi|257386709|ref|YP_003176482.1| - 9.2e-11 42.6 0.0 1.6e-10 41.9 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|257386709|ref|YP_003176482.1| - 0.074 13.1 0.1 0.14 12.2 0.1 1.4 1 0 0 1 1 1 0 Oxidoreductase family, C-terminal alpha/beta domain Aldo_ket_red PF00248.21 gi|257386710|ref|YP_003176483.1| - 5.3e-52 176.8 0.0 6.5e-50 170.0 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family GvpG PF05120.12 gi|257386710|ref|YP_003176483.1| - 0.032 14.2 0.1 0.063 13.3 0.1 1.4 1 0 0 1 1 1 0 Gas vesicle protein G DnaGprimase_HBD PF16730.5 gi|257386710|ref|YP_003176483.1| - 0.13 12.4 0.0 0.24 11.5 0.0 1.4 1 0 0 1 1 1 0 DnaG-primase C-terminal, helicase-binding domain Bac_globin PF01152.21 gi|257386711|ref|YP_003176484.1| - 3.8e-17 62.5 0.0 4.5e-17 62.3 0.0 1.0 1 0 0 1 1 1 1 Bacterial-like globin Protoglobin PF11563.8 gi|257386711|ref|YP_003176484.1| - 0.038 13.9 0.0 0.079 12.8 0.0 1.5 2 0 0 2 2 2 0 Protoglobin TPR_7 PF13176.6 gi|257386711|ref|YP_003176484.1| - 0.075 13.1 1.7 5.4 7.3 0.1 3.4 3 0 0 3 3 3 0 Tetratricopeptide repeat DUF429 PF04250.13 gi|257386712|ref|YP_003176485.1| - 2.9e-39 135.0 7.3 3.7e-39 134.7 7.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF429) CSD PF00313.22 gi|257386713|ref|YP_003176486.1| - 1.5e-20 72.8 0.1 1.7e-20 72.6 0.1 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain OB_RNB PF08206.11 gi|257386713|ref|YP_003176486.1| - 0.05 13.3 2.5 0.07 12.8 2.5 1.3 1 0 0 1 1 1 0 Ribonuclease B OB domain S1-like PF14444.6 gi|257386713|ref|YP_003176486.1| - 0.066 13.2 1.2 0.095 12.7 1.2 1.4 1 1 0 1 1 1 0 S1-like CusF_Ec PF11604.8 gi|257386713|ref|YP_003176486.1| - 0.087 12.8 0.1 0.18 11.8 0.1 1.6 1 1 1 2 2 2 0 Copper binding periplasmic protein CusF Pro_CA PF00484.19 gi|257386714|ref|YP_003176487.1| - 7.1e-25 88.1 0.0 1e-24 87.6 0.0 1.2 1 0 0 1 1 1 1 Carbonic anhydrase GT87 PF09594.10 gi|257386715|ref|YP_003176488.1| - 1.6e-27 96.8 38.9 1.6e-27 96.8 38.9 2.9 3 0 0 3 3 3 1 Glycosyltransferase family 87 Pilin_N PF07790.11 gi|257386717|ref|YP_003176490.1| - 6.2e-19 68.7 0.1 2.1e-18 67.0 0.0 1.8 1 1 1 2 2 2 1 Archaeal Type IV pilin, N-terminal GST_N_2 PF13409.6 gi|257386718|ref|YP_003176491.1| - 9.7e-22 77.1 0.1 7.7e-21 74.2 0.0 2.1 2 0 0 2 2 2 1 Glutathione S-transferase, N-terminal domain GST_C_2 PF13410.6 gi|257386718|ref|YP_003176491.1| - 4.2e-13 49.1 1.1 9.3e-13 48.0 1.1 1.6 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C PF00043.25 gi|257386718|ref|YP_003176491.1| - 1.1e-07 32.0 0.0 2.3e-07 30.9 0.0 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_C_6 PF17171.4 gi|257386718|ref|YP_003176491.1| - 3.4e-05 23.6 0.2 6.5e-05 22.6 0.2 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain GST_N_3 PF13417.6 gi|257386718|ref|YP_003176491.1| - 9.1e-05 22.8 0.0 0.0026 18.1 0.0 2.5 1 1 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_C_3 PF14497.6 gi|257386718|ref|YP_003176491.1| - 0.00016 21.8 0.0 0.0003 20.9 0.0 1.5 1 0 0 1 1 1 1 Glutathione S-transferase, C-terminal domain SANT_DAMP1_like PF16282.5 gi|257386718|ref|YP_003176491.1| - 0.0065 16.6 0.1 0.018 15.2 0.1 1.7 1 0 0 1 1 1 1 SANT/Myb-like domain of DAMP1 Ribosomal_L16 PF00252.18 gi|257386719|ref|YP_003176492.1| - 1.7e-29 102.5 0.2 2e-29 102.3 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L16p/L10e YrhC PF14143.6 gi|257386722|ref|YP_003176495.1| - 0.31 11.2 2.3 0.39 10.9 0.6 1.9 2 0 0 2 2 2 0 YrhC-like protein RimK PF08443.11 gi|257386723|ref|YP_003176496.1| - 1.5e-23 83.3 0.0 2.2e-23 82.8 0.0 1.2 1 0 0 1 1 1 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.16 gi|257386723|ref|YP_003176496.1| - 5.4e-10 39.0 0.0 8e-10 38.4 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATPgrasp_ST PF14397.6 gi|257386723|ref|YP_003176496.1| - 3.8e-06 26.4 0.0 0.034 13.4 0.0 2.2 2 0 0 2 2 2 2 Sugar-transfer associated ATP-grasp ATP-grasp_3 PF02655.14 gi|257386723|ref|YP_003176496.1| - 3.9e-06 27.0 0.0 7.5e-06 26.1 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|257386723|ref|YP_003176496.1| - 0.00032 20.3 0.0 0.00047 19.7 0.0 1.2 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain TTL PF03133.15 gi|257386723|ref|YP_003176496.1| - 0.0018 17.4 0.0 0.027 13.6 0.0 2.0 2 0 0 2 2 2 1 Tubulin-tyrosine ligase family Dala_Dala_lig_C PF07478.13 gi|257386723|ref|YP_003176496.1| - 0.0084 15.7 0.0 0.025 14.1 0.0 1.7 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus ATP-grasp PF02222.22 gi|257386723|ref|YP_003176496.1| - 0.015 14.9 0.0 0.034 13.7 0.0 1.5 1 1 0 1 1 1 0 ATP-grasp domain ATP-grasp_4 PF13535.6 gi|257386723|ref|YP_003176496.1| - 0.065 12.8 0.0 0.12 11.9 0.0 1.4 1 0 0 1 1 1 0 ATP-grasp domain R2K_2 PF18299.1 gi|257386723|ref|YP_003176496.1| - 0.12 12.3 0.1 0.4 10.5 0.1 2.0 1 1 0 1 1 1 0 ATP-grasp domain, R2K clade family 2 ArsA_HSP20 PF17886.1 gi|257386724|ref|YP_003176497.1| - 1.5e-16 59.7 0.0 2.2e-16 59.1 0.0 1.3 1 0 0 1 1 1 1 HSP20-like domain found in ArsA HSP20 PF00011.21 gi|257386724|ref|YP_003176497.1| - 1.3e-11 44.5 0.1 5.5e-10 39.3 0.1 2.1 1 1 0 1 1 1 1 Hsp20/alpha crystallin family GvpH PF05455.11 gi|257386724|ref|YP_003176497.1| - 0.00011 22.3 3.2 0.00014 22.0 3.2 1.2 1 0 0 1 1 1 1 GvpH PIH1_CS PF18201.1 gi|257386724|ref|YP_003176497.1| - 0.069 13.6 0.0 0.093 13.2 0.0 1.1 1 0 0 1 1 1 0 PIH1 CS-like domain Gp_dh_C PF02800.20 gi|257386725|ref|YP_003176498.1| - 1.8e-59 199.8 0.0 2.6e-59 199.4 0.0 1.2 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Gp_dh_N PF00044.24 gi|257386725|ref|YP_003176498.1| - 5.5e-30 103.7 0.0 1.1e-29 102.8 0.0 1.5 1 0 0 1 1 1 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DapB_N PF01113.20 gi|257386725|ref|YP_003176498.1| - 0.0073 16.4 0.3 0.028 14.5 0.0 2.2 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus 2-Hacid_dh_C PF02826.19 gi|257386725|ref|YP_003176498.1| - 0.12 11.7 0.0 0.2 11.0 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain MC1 PF05854.11 gi|257386726|ref|YP_003176499.1| - 1.4e-47 159.9 0.2 1.7e-47 159.7 0.2 1.0 1 0 0 1 1 1 1 Non-histone chromosomal protein MC1 DUF4776 PF16003.5 gi|257386726|ref|YP_003176499.1| - 0.002 17.3 0.1 0.002 17.3 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4776) MazE_antitoxin PF04014.18 gi|257386727|ref|YP_003176500.1| - 0.014 15.3 0.2 0.02 14.8 0.2 1.3 1 0 0 1 1 1 0 Antidote-toxin recognition MazE, bacterial antitoxin SymE_toxin PF08845.10 gi|257386727|ref|YP_003176500.1| - 0.026 14.6 0.0 0.031 14.3 0.0 1.3 1 0 0 1 1 1 0 Toxin SymE, type I toxin-antitoxin system DHO_dh PF01180.21 gi|257386728|ref|YP_003176501.1| - 1e-80 271.1 0.0 1.2e-80 270.9 0.0 1.0 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase NMO PF03060.15 gi|257386728|ref|YP_003176501.1| - 0.00037 20.0 0.4 0.00091 18.7 0.5 1.5 2 0 0 2 2 2 1 Nitronate monooxygenase His_biosynth PF00977.21 gi|257386728|ref|YP_003176501.1| - 0.048 13.1 0.0 0.083 12.3 0.0 1.3 1 0 0 1 1 1 0 Histidine biosynthesis protein tRNA_synthFbeta PF17759.1 gi|257386729|ref|YP_003176502.1| - 1.5e-36 125.9 0.0 2e-36 125.5 0.0 1.2 1 0 0 1 1 1 1 Phenylalanyl tRNA synthetase beta chain CLM domain B5 PF03484.15 gi|257386729|ref|YP_003176502.1| - 5.9e-15 55.3 0.1 1.4e-13 51.0 0.2 2.7 2 0 0 2 2 2 1 tRNA synthetase B5 domain B3_4 PF03483.17 gi|257386729|ref|YP_003176502.1| - 9.9e-12 44.9 0.0 2.5e-07 30.5 0.0 2.3 2 0 0 2 2 2 2 B3/4 domain PhetRS_B1 PF18262.1 gi|257386729|ref|YP_003176502.1| - 1.3e-06 28.6 0.3 0.00029 21.0 0.0 3.2 3 1 0 3 3 3 1 Phe-tRNA synthetase beta subunit B1 domain tRNA-synt_2d PF01409.20 gi|257386729|ref|YP_003176502.1| - 0.0056 16.2 0.0 0.0096 15.4 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA-synt_2d PF01409.20 gi|257386730|ref|YP_003176503.1| - 1.4e-79 267.1 0.0 1.7e-79 266.8 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II core domain (F) tRNA-synt_2 PF00152.20 gi|257386730|ref|YP_003176503.1| - 9.7e-05 21.6 0.9 0.091 11.8 0.2 2.3 2 0 0 2 2 2 2 tRNA synthetases class II (D, K and N) tRNA_synthFbeta PF17759.1 gi|257386730|ref|YP_003176503.1| - 0.003 17.0 0.0 0.29 10.5 0.0 2.3 2 0 0 2 2 2 2 Phenylalanyl tRNA synthetase beta chain CLM domain MarR PF01047.22 gi|257386730|ref|YP_003176503.1| - 0.19 11.7 0.0 0.68 9.9 0.0 1.9 2 0 0 2 2 2 0 MarR family tRNA-synt_1b PF00579.25 gi|257386731|ref|YP_003176504.1| - 6.4e-43 147.1 0.0 7.1e-25 87.9 0.0 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (W and Y) tRNA_int_endo PF01974.17 gi|257386732|ref|YP_003176505.1| - 1.4e-27 95.6 0.3 1.8e-21 76.0 0.0 3.0 2 1 0 2 2 2 2 tRNA intron endonuclease, catalytic C-terminal domain tRNA_int_endo_N PF02778.14 gi|257386732|ref|YP_003176505.1| - 1.6e-27 95.0 0.0 7.9e-13 47.9 0.0 2.4 2 0 0 2 2 2 2 tRNA intron endonuclease, N-terminal domain tRNA_int_end_N2 PF12928.7 gi|257386732|ref|YP_003176505.1| - 0.0047 17.1 0.0 0.23 11.6 0.0 2.7 2 1 0 2 2 2 1 tRNA-splicing endonuclease subunit sen54 N-term zf-C4_Topoisom PF01396.19 gi|257386733|ref|YP_003176506.1| - 8.8e-09 35.0 3.5 2.5e-06 27.1 0.1 2.7 2 0 0 2 2 2 2 Topoisomerase DNA binding C4 zinc finger NucS PF01939.16 gi|257386733|ref|YP_003176506.1| - 5.6e-06 25.9 0.0 8e-06 25.4 0.0 1.1 1 0 0 1 1 1 1 Endonuclease NucS zinc-ribbons_6 PF07191.12 gi|257386733|ref|YP_003176506.1| - 0.0002 21.2 5.2 0.11 12.5 1.2 2.6 1 1 1 2 2 2 2 zinc-ribbons Auto_anti-p27 PF06677.12 gi|257386733|ref|YP_003176506.1| - 0.17 12.1 18.8 2.8 8.2 0.8 4.5 5 0 0 5 5 5 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) HypA PF01155.19 gi|257386733|ref|YP_003176506.1| - 0.65 10.0 8.2 0.17 11.9 0.9 2.9 1 1 3 4 4 4 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_4 PF13717.6 gi|257386733|ref|YP_003176506.1| - 1.1 9.3 9.7 1.2 9.1 1.2 4.0 4 0 0 4 4 4 0 zinc-ribbon domain zf-TFIIB PF13453.6 gi|257386733|ref|YP_003176506.1| - 1.3 8.4 0.0 1.3 8.4 0.0 3.7 4 1 1 5 5 5 0 Transcription factor zinc-finger HAD_2 PF13419.6 gi|257386736|ref|YP_003176509.1| - 1.3e-28 100.3 0.0 1.5e-28 100.1 0.0 1.0 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|257386736|ref|YP_003176509.1| - 9.1e-18 65.3 0.1 9.5e-17 62.0 0.1 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|257386736|ref|YP_003176509.1| - 4.2e-11 43.6 0.0 5.3e-11 43.3 0.0 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|257386736|ref|YP_003176509.1| - 6.4e-09 35.8 0.2 3.7e-08 33.3 0.4 2.0 2 0 0 2 2 2 1 HAD-hyrolase-like Hydrolase_6 PF13344.6 gi|257386736|ref|YP_003176509.1| - 0.002 18.2 0.0 0.019 15.1 0.0 2.3 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase DEAD PF00270.29 gi|257386737|ref|YP_003176510.1| - 1.4e-23 83.5 0.0 2.9e-23 82.5 0.0 1.5 1 0 0 1 1 1 1 DEAD/DEAH box helicase Sec63 PF02889.16 gi|257386737|ref|YP_003176510.1| - 1.4e-14 53.9 0.0 1.8e-14 53.5 0.0 1.2 1 0 0 1 1 1 1 Sec63 Brl domain ResIII PF04851.15 gi|257386737|ref|YP_003176510.1| - 3.1e-10 40.3 0.0 4.6e-10 39.7 0.0 1.2 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Helicase_C PF00271.31 gi|257386737|ref|YP_003176510.1| - 2.8e-07 30.8 0.0 1.6e-06 28.4 0.0 2.2 1 1 0 1 1 1 1 Helicase conserved C-terminal domain HHH_5 PF14520.6 gi|257386737|ref|YP_003176510.1| - 7.7e-06 26.4 0.1 2.3e-05 24.9 0.1 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.9 gi|257386737|ref|YP_003176510.1| - 0.0038 17.0 0.2 0.014 15.2 0.1 2.0 2 0 0 2 2 2 1 Fingers domain of DNA polymerase lambda HHH PF00633.23 gi|257386737|ref|YP_003176510.1| - 0.063 13.2 0.2 0.19 11.7 0.2 1.8 1 0 0 1 1 1 0 Helix-hairpin-helix motif T2SSE PF00437.20 gi|257386737|ref|YP_003176510.1| - 0.077 12.0 0.0 0.14 11.2 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein HemN_C PF06969.16 gi|257386737|ref|YP_003176510.1| - 0.1 12.7 0.0 0.29 11.2 0.0 1.8 1 0 0 1 1 1 0 HemN C-terminal domain Radical_SAM PF04055.21 gi|257386738|ref|YP_003176511.1| - 3.2e-11 43.9 0.0 6.7e-11 42.9 0.0 1.6 1 1 0 1 1 1 1 Radical SAM superfamily LIAS_N PF16881.5 gi|257386738|ref|YP_003176511.1| - 7.8e-11 42.4 0.1 1.5e-10 41.5 0.1 1.5 1 0 0 1 1 1 1 N-terminal domain of lipoyl synthase of Radical_SAM family B12-binding PF02310.19 gi|257386738|ref|YP_003176511.1| - 0.073 13.1 0.1 4 7.5 0.0 2.6 2 1 1 3 3 3 0 B12 binding domain zinc_ribbon_4 PF13717.6 gi|257386739|ref|YP_003176512.1| - 0.001 18.9 0.4 0.0019 18.0 0.4 1.4 1 0 0 1 1 1 1 zinc-ribbon domain CEP209_CC5 PF16574.5 gi|257386739|ref|YP_003176512.1| - 0.061 13.5 0.0 0.13 12.4 0.0 1.5 1 0 0 1 1 1 0 Coiled-coil region of centrosome protein CE290 Fer4_10 PF13237.6 gi|257386739|ref|YP_003176512.1| - 0.061 13.4 1.3 0.11 12.7 1.3 1.3 1 0 0 1 1 1 0 4Fe-4S dicluster domain Lar_restr_allev PF14354.6 gi|257386739|ref|YP_003176512.1| - 0.29 11.5 1.7 0.51 10.7 0.8 2.0 2 0 0 2 2 2 0 Restriction alleviation protein Lar DNA_ligase_ZBD PF03119.16 gi|257386739|ref|YP_003176512.1| - 0.37 10.9 5.7 0.21 11.7 2.5 2.3 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain E1_dh PF00676.20 gi|257386740|ref|YP_003176513.1| - 1.2e-86 290.4 0.0 1.5e-86 290.1 0.0 1.1 1 0 0 1 1 1 1 Dehydrogenase E1 component DXP_synthase_N PF13292.6 gi|257386740|ref|YP_003176513.1| - 8e-06 25.3 0.0 1.1e-05 24.8 0.0 1.2 1 0 0 1 1 1 1 1-deoxy-D-xylulose-5-phosphate synthase HTH_41 PF14502.6 gi|257386740|ref|YP_003176513.1| - 0.026 14.2 0.0 0.054 13.2 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Transket_pyr PF02779.24 gi|257386741|ref|YP_003176514.1| - 1.5e-49 168.1 0.0 2.1e-49 167.6 0.0 1.2 1 0 0 1 1 1 1 Transketolase, pyrimidine binding domain Transketolase_C PF02780.20 gi|257386741|ref|YP_003176514.1| - 8.2e-37 125.9 0.1 1.5e-36 125.0 0.1 1.4 1 0 0 1 1 1 1 Transketolase, C-terminal domain 2-oxoacid_dh PF00198.23 gi|257386742|ref|YP_003176515.1| - 1.7e-80 269.9 0.0 2.2e-80 269.4 0.0 1.2 1 0 0 1 1 1 1 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Biotin_lipoyl PF00364.22 gi|257386742|ref|YP_003176515.1| - 2.6e-23 81.6 0.5 4.7e-23 80.8 0.5 1.5 1 0 0 1 1 1 1 Biotin-requiring enzyme E3_binding PF02817.17 gi|257386742|ref|YP_003176515.1| - 7.5e-21 74.2 0.8 2.5e-13 50.1 0.2 3.6 3 0 0 3 3 3 2 e3 binding domain Biotin_lipoyl_2 PF13533.6 gi|257386742|ref|YP_003176515.1| - 4.6e-07 29.5 0.1 0.017 15.0 0.0 2.6 1 1 1 2 2 2 2 Biotin-lipoyl like HlyD_3 PF13437.6 gi|257386742|ref|YP_003176515.1| - 3.3e-05 24.5 1.1 0.011 16.4 0.1 2.6 1 1 1 2 2 2 2 HlyD family secretion protein GCV_H PF01597.19 gi|257386742|ref|YP_003176515.1| - 0.0009 19.1 0.1 0.0022 17.9 0.1 1.6 1 0 0 1 1 1 1 Glycine cleavage H-protein RnfC_N PF13375.6 gi|257386742|ref|YP_003176515.1| - 0.0056 16.6 0.2 0.013 15.4 0.2 1.6 1 0 0 1 1 1 1 RnfC Barrel sandwich hybrid domain HlyD_D23 PF16576.5 gi|257386742|ref|YP_003176515.1| - 0.016 14.4 0.1 0.1 11.8 0.1 2.0 1 1 1 2 2 2 0 Barrel-sandwich domain of CusB or HlyD membrane-fusion ZapA PF05164.13 gi|257386742|ref|YP_003176515.1| - 0.086 13.3 0.4 17 5.9 0.1 3.1 3 0 0 3 3 3 0 Cell division protein ZapA CAT PF00302.18 gi|257386742|ref|YP_003176515.1| - 0.15 12.0 0.0 0.23 11.4 0.0 1.2 1 0 0 1 1 1 0 Chloramphenicol acetyltransferase PQQ_3 PF13570.6 gi|257386743|ref|YP_003176516.1| - 1e-89 293.1 46.3 1.2e-12 47.9 2.5 8.2 8 0 0 8 8 8 8 PQQ-like domain PQQ_2 PF13360.6 gi|257386743|ref|YP_003176516.1| - 1.3e-75 254.0 37.0 2.6e-25 89.4 5.1 4.1 1 1 3 4 4 4 4 PQQ-like domain PQQ PF01011.21 gi|257386743|ref|YP_003176516.1| - 4.5e-64 209.5 30.7 1.5e-11 43.6 0.2 8.8 9 0 0 9 9 9 8 PQQ enzyme repeat Rod_cone_degen PF15201.6 gi|257386743|ref|YP_003176516.1| - 0.013 15.6 14.7 2.7 8.2 0.0 6.1 6 1 1 7 7 7 0 Progressive rod-cone degeneration WD40_like PF17005.5 gi|257386743|ref|YP_003176516.1| - 0.043 13.1 0.1 4.6 6.5 0.0 3.3 3 1 1 4 4 4 0 WD40-like domain SUKH-4 PF14435.6 gi|257386743|ref|YP_003176516.1| - 0.14 12.2 9.5 2.8 8.0 0.1 4.7 2 2 4 6 6 6 0 SUKH-4 immunity protein Tube PF17212.3 gi|257386743|ref|YP_003176516.1| - 0.14 12.2 0.1 24 4.9 0.0 3.6 3 2 1 4 4 4 0 Tail tubular protein ESSS PF10183.9 gi|257386743|ref|YP_003176516.1| - 0.15 12.3 0.6 1.1 9.5 0.0 2.5 2 1 0 2 2 2 0 ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) PGF-CTERM PF18204.1 gi|257386743|ref|YP_003176516.1| - 0.33 11.0 1.6 0.91 9.6 1.6 1.8 1 0 0 1 1 1 0 PGF-CTERM motif ABC_tran PF00005.27 gi|257386744|ref|YP_003176517.1| - 2.2e-25 89.7 0.0 2.9e-25 89.4 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|257386744|ref|YP_003176517.1| - 9.1e-15 55.2 0.0 3.7e-10 40.1 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|257386744|ref|YP_003176517.1| - 0.0012 18.6 0.0 0.4 10.3 0.0 2.0 2 0 0 2 2 2 2 AAA ATPase domain AAA_30 PF13604.6 gi|257386744|ref|YP_003176517.1| - 0.016 14.9 0.0 0.037 13.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|257386744|ref|YP_003176517.1| - 0.026 15.0 0.0 0.047 14.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.6 gi|257386744|ref|YP_003176517.1| - 0.027 13.1 0.5 1.8 7.1 0.1 2.0 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|257386744|ref|YP_003176517.1| - 0.04 14.2 0.0 0.51 10.6 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|257386744|ref|YP_003176517.1| - 0.047 14.1 0.7 5.5 7.4 0.4 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) SbcCD_C PF13558.6 gi|257386744|ref|YP_003176517.1| - 0.065 13.5 0.0 0.12 12.7 0.0 1.5 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit Oxidored_FMN PF00724.20 gi|257386746|ref|YP_003176519.1| - 7.3e-30 104.4 0.0 2.4e-26 92.8 0.0 2.2 2 0 0 2 2 2 2 NADH:flavin oxidoreductase / NADH oxidase family tRNA-synt_1 PF00133.22 gi|257386747|ref|YP_003176520.1| - 1.3e-68 231.7 3.7 1.5e-37 129.1 3.8 4.7 2 1 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1_2 PF13603.6 gi|257386747|ref|YP_003176520.1| - 7.2e-51 172.3 0.0 1.2e-50 171.7 0.0 1.3 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1g PF09334.11 gi|257386747|ref|YP_003176520.1| - 2.4e-39 135.2 0.3 2.3e-25 89.2 0.0 4.7 4 1 1 5 5 5 2 tRNA synthetases class I (M) Anticodon_1 PF08264.13 gi|257386747|ref|YP_003176520.1| - 7.4e-16 58.5 0.0 1.5e-15 57.4 0.0 1.4 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.19 gi|257386747|ref|YP_003176520.1| - 2.8e-09 36.8 0.0 4.6e-06 26.2 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|257386747|ref|YP_003176520.1| - 2.7e-06 26.6 0.0 0.00027 20.0 0.0 2.7 2 0 0 2 2 2 1 tRNA synthetases class I (K) DZR PF12773.7 gi|257386747|ref|YP_003176520.1| - 0.0017 18.3 3.4 0.87 9.7 0.4 2.5 2 0 0 2 2 2 2 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|257386747|ref|YP_003176520.1| - 0.0043 16.4 8.6 1.9 8.0 0.1 4.3 4 0 0 4 4 4 1 zinc-ribbon domain DNA_ligase_ZBD PF03119.16 gi|257386747|ref|YP_003176520.1| - 0.012 15.6 6.0 0.11 12.5 0.0 3.0 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain tRNA-synt_1b PF00579.25 gi|257386747|ref|YP_003176520.1| - 0.025 13.9 0.0 0.045 13.1 0.0 1.3 1 0 0 1 1 1 0 tRNA synthetases class I (W and Y) Lar_restr_allev PF14354.6 gi|257386747|ref|YP_003176520.1| - 0.19 12.1 1.0 22 5.5 0.0 3.2 3 0 0 3 3 3 0 Restriction alleviation protein Lar Auto_anti-p27 PF06677.12 gi|257386747|ref|YP_003176520.1| - 0.78 9.9 6.9 4.9 7.4 0.2 3.0 3 0 0 3 3 3 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) TF_Zn_Ribbon PF08271.12 gi|257386747|ref|YP_003176520.1| - 1.5 8.4 9.4 7.3 6.2 0.5 3.6 3 0 0 3 3 3 0 TFIIB zinc-binding Zn-ribbon_8 PF09723.10 gi|257386747|ref|YP_003176520.1| - 2.8 8.1 10.7 0.59 10.3 0.1 3.5 3 1 0 3 3 3 0 Zinc ribbon domain PknG_rubred PF16919.5 gi|257386747|ref|YP_003176520.1| - 3 8.0 4.6 18 5.5 0.1 3.0 3 0 0 3 3 3 0 Protein kinase G rubredoxin domain BAT PF15915.5 gi|257386748|ref|YP_003176521.1| - 1.1e-43 148.9 8.8 1.1e-43 148.9 8.8 3.0 3 0 0 3 3 3 1 GAF and HTH_10 associated domain GAF_2 PF13185.6 gi|257386748|ref|YP_003176521.1| - 2.1e-25 89.6 10.0 2.8e-13 50.3 0.7 3.7 3 0 0 3 3 3 2 GAF domain HTH_10 PF04967.12 gi|257386748|ref|YP_003176521.1| - 5.5e-18 64.5 0.0 1.3e-17 63.3 0.0 1.7 1 0 0 1 1 1 1 HTH DNA binding domain GAF_3 PF13492.6 gi|257386748|ref|YP_003176521.1| - 1.7e-13 51.0 0.2 1.6e-05 25.3 0.0 3.0 2 0 0 2 2 2 2 GAF domain PAS PF00989.25 gi|257386748|ref|YP_003176521.1| - 6e-13 48.8 0.1 2.3e-12 46.9 0.0 2.2 2 0 0 2 2 2 1 PAS fold PAS_4 PF08448.10 gi|257386748|ref|YP_003176521.1| - 2.3e-12 47.1 0.6 2.3e-12 47.1 0.6 3.1 4 0 0 4 4 4 1 PAS fold PAS_9 PF13426.7 gi|257386748|ref|YP_003176521.1| - 5.1e-12 46.0 0.5 2.4e-11 43.8 0.0 2.4 3 0 0 3 3 3 1 PAS domain GAF PF01590.26 gi|257386748|ref|YP_003176521.1| - 5.3e-10 40.0 1.6 0.00088 19.9 0.0 3.1 4 0 0 4 4 4 2 GAF domain PAS_8 PF13188.7 gi|257386748|ref|YP_003176521.1| - 1.7e-07 31.1 0.0 7e-07 29.1 0.0 2.1 1 0 0 1 1 1 1 PAS domain PAS_3 PF08447.12 gi|257386748|ref|YP_003176521.1| - 0.041 14.2 0.0 0.11 12.8 0.0 1.8 1 0 0 1 1 1 0 PAS fold PAS_7 PF12860.7 gi|257386748|ref|YP_003176521.1| - 0.098 12.8 0.4 0.47 10.6 0.0 2.5 2 1 0 2 2 2 0 PAS fold PAS_10 PF13596.6 gi|257386748|ref|YP_003176521.1| - 0.14 12.8 0.0 0.64 10.6 0.0 2.2 2 0 0 2 2 2 0 PAS domain Epimerase PF01370.21 gi|257386749|ref|YP_003176522.1| - 3.9e-27 95.3 0.1 4.5e-26 91.8 0.1 2.0 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|257386749|ref|YP_003176522.1| - 1e-15 58.0 0.2 1.9e-07 30.8 0.0 3.1 1 1 2 3 3 3 3 GDP-mannose 4,6 dehydratase Polysacc_synt_2 PF02719.15 gi|257386749|ref|YP_003176522.1| - 1.8e-13 50.3 1.2 5.6e-13 48.7 0.1 1.9 1 1 1 2 2 2 1 Polysaccharide biosynthesis protein RmlD_sub_bind PF04321.17 gi|257386749|ref|YP_003176522.1| - 1.3e-12 47.5 0.2 7.4e-11 41.7 0.2 2.1 1 1 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|257386749|ref|YP_003176522.1| - 1.9e-06 27.3 0.9 0.0029 16.8 0.1 2.7 2 1 1 3 3 3 2 Male sterility protein 3Beta_HSD PF01073.19 gi|257386749|ref|YP_003176522.1| - 0.00011 21.4 0.6 0.0012 17.9 0.6 2.3 1 1 1 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family B12-binding PF02310.19 gi|257386749|ref|YP_003176522.1| - 0.004 17.2 2.4 0.09 12.8 0.5 2.3 1 1 1 2 2 2 1 B12 binding domain UDPG_MGDP_dh_N PF03721.14 gi|257386749|ref|YP_003176522.1| - 0.021 14.4 0.0 0.035 13.7 0.0 1.4 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain adh_short PF00106.25 gi|257386749|ref|YP_003176522.1| - 0.099 12.1 0.4 1.8 8.0 0.1 2.2 1 1 1 2 2 2 0 short chain dehydrogenase Chitin_synth_2 PF03142.15 gi|257386749|ref|YP_003176522.1| - 0.19 10.3 0.0 0.26 9.9 0.0 1.1 1 0 0 1 1 1 0 Chitin synthase MatE PF01554.18 gi|257386751|ref|YP_003176524.1| - 4.7e-53 179.1 19.2 7.9e-29 100.4 5.4 3.3 3 1 1 4 4 4 2 MatE Polysacc_synt_C PF14667.6 gi|257386751|ref|YP_003176524.1| - 1.4e-07 31.6 11.1 1.4e-07 31.6 11.1 4.6 4 3 1 5 5 5 2 Polysaccharide biosynthesis C-terminal domain NDUF_B12 PF08122.12 gi|257386751|ref|YP_003176524.1| - 0.2 11.7 3.5 0.22 11.6 0.4 2.8 2 0 0 2 2 2 0 NADH-ubiquinone oxidoreductase B12 subunit family Mqo PF06039.15 gi|257386752|ref|YP_003176525.1| - 4.3e-26 91.5 0.0 7.2e-25 87.5 0.0 2.0 1 1 0 1 1 1 1 Malate:quinone oxidoreductase (Mqo) DAO PF01266.24 gi|257386752|ref|YP_003176525.1| - 9.6e-25 87.9 0.0 1.3e-24 87.4 0.0 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|257386752|ref|YP_003176525.1| - 6.7e-05 22.3 0.1 0.058 12.6 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|257386752|ref|YP_003176525.1| - 0.0021 18.0 0.1 1.5 8.8 0.0 2.3 2 0 0 2 2 2 2 FAD-NAD(P)-binding Pyr_redox_3 PF13738.6 gi|257386752|ref|YP_003176525.1| - 0.02 14.2 0.4 0.58 9.4 0.0 2.2 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|257386752|ref|YP_003176525.1| - 0.044 14.4 0.2 4.6 7.9 0.1 2.5 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|257386752|ref|YP_003176525.1| - 0.059 12.4 0.0 0.074 12.1 0.0 1.1 1 0 0 1 1 1 0 FAD binding domain NAD_binding_8 PF13450.6 gi|257386752|ref|YP_003176525.1| - 0.076 13.2 0.1 0.23 11.7 0.0 1.9 2 0 0 2 2 1 0 NAD(P)-binding Rossmann-like domain Thi4 PF01946.17 gi|257386752|ref|YP_003176525.1| - 0.11 11.7 0.7 1.3 8.2 0.1 2.2 2 0 0 2 2 2 0 Thi4 family HI0933_like PF03486.14 gi|257386752|ref|YP_003176525.1| - 0.14 10.9 0.2 0.63 8.7 0.0 1.9 2 0 0 2 2 2 0 HI0933-like protein Strep_his_triad PF04270.13 gi|257386752|ref|YP_003176525.1| - 0.19 11.7 0.9 12 6.0 0.3 2.8 2 0 0 2 2 2 0 Streptococcal histidine triad protein Fer4_15 PF13459.6 gi|257386753|ref|YP_003176526.1| - 9.5e-22 77.5 4.6 1.1e-21 77.3 4.6 1.1 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|257386753|ref|YP_003176526.1| - 4.8e-08 33.4 1.2 9.2e-08 32.5 1.2 1.5 1 1 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4 PF00037.27 gi|257386753|ref|YP_003176526.1| - 0.27 11.1 1.9 5.9 6.9 0.1 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain DEAD PF00270.29 gi|257386754|ref|YP_003176527.1| - 1.4e-22 80.3 0.0 2.4e-22 79.5 0.0 1.4 1 0 0 1 1 1 1 DEAD/DEAH box helicase HHH_5 PF14520.6 gi|257386754|ref|YP_003176527.1| - 2.9e-06 27.8 1.4 1e-05 26.0 0.2 2.7 2 0 0 2 2 2 1 Helix-hairpin-helix domain Helicase_C PF00271.31 gi|257386754|ref|YP_003176527.1| - 1.9e-05 25.0 0.0 0.00016 22.0 0.0 2.2 1 1 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|257386754|ref|YP_003176527.1| - 0.00015 21.8 0.0 0.00036 20.6 0.0 1.6 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit DNA_pol_lambd_f PF10391.9 gi|257386754|ref|YP_003176527.1| - 0.00024 20.9 0.0 0.00092 19.0 0.0 2.0 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda HHH PF00633.23 gi|257386754|ref|YP_003176527.1| - 0.14 12.1 0.7 1.3 9.0 0.0 3.1 3 0 0 3 3 3 0 Helix-hairpin-helix motif CGI-121 PF08617.10 gi|257386755|ref|YP_003176528.1| - 1e-08 35.4 0.0 1.2e-08 35.3 0.0 1.0 1 0 0 1 1 1 1 Kinase binding protein CGI-121 NicO PF03824.16 gi|257386756|ref|YP_003176529.1| - 6e-08 32.4 3.5 1.5e-07 31.1 3.5 1.7 1 0 0 1 1 1 1 High-affinity nickel-transport protein Ocular_alb PF02101.15 gi|257386756|ref|YP_003176529.1| - 0.49 9.2 1.6 0.69 8.8 1.6 1.1 1 0 0 1 1 1 0 Ocular albinism type 1 protein Adenylsucc_synt PF00709.21 gi|257386757|ref|YP_003176530.1| - 3.8e-156 520.2 0.0 4.4e-156 520.0 0.0 1.0 1 0 0 1 1 1 1 Adenylosuccinate synthetase DUF1684 PF07920.11 gi|257386758|ref|YP_003176531.1| - 2.8e-53 180.0 0.3 4.3e-53 179.4 0.3 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1684) RVT_3 PF13456.6 gi|257386759|ref|YP_003176532.1| - 3.6e-07 30.0 0.0 4.1e-07 29.8 0.0 1.0 1 0 0 1 1 1 1 Reverse transcriptase-like DUF839 PF05787.13 gi|257386761|ref|YP_003176534.1| - 5.1e-19 68.8 16.2 2e-17 63.5 12.0 3.6 2 1 1 3 3 3 1 Bacterial protein of unknown function (DUF839) EF-hand_1 PF00036.32 gi|257386761|ref|YP_003176534.1| - 0.0015 17.9 4.1 1 9.0 0.9 3.1 2 0 0 2 2 2 2 EF hand Dockerin_1 PF00404.18 gi|257386761|ref|YP_003176534.1| - 0.0021 18.2 3.7 0.0053 16.9 3.7 1.7 1 0 0 1 1 1 1 Dockerin type I domain EF-hand_6 PF13405.6 gi|257386761|ref|YP_003176534.1| - 0.0074 16.1 4.7 0.49 10.5 0.3 3.2 3 0 0 3 3 3 2 EF-hand domain PTPA PF03095.15 gi|257386761|ref|YP_003176534.1| - 0.1 12.0 0.4 0.81 9.1 0.1 2.0 2 0 0 2 2 2 0 Phosphotyrosyl phosphate activator (PTPA) protein EF-hand_7 PF13499.6 gi|257386761|ref|YP_003176534.1| - 0.27 11.7 4.2 0.58 10.7 2.3 2.6 2 1 0 2 2 2 0 EF-hand domain pair DUF2190 PF09956.9 gi|257386761|ref|YP_003176534.1| - 0.38 11.3 0.0 0.38 11.3 0.0 3.2 4 0 0 4 4 4 0 Uncharacterized conserved protein (DUF2190) Cupin_2 PF07883.11 gi|257386763|ref|YP_003176536.1| - 3.3e-11 42.7 0.4 4.6e-11 42.3 0.4 1.2 1 0 0 1 1 1 1 Cupin domain Cupin_3 PF05899.12 gi|257386763|ref|YP_003176536.1| - 2.8e-05 23.7 0.1 4.1e-05 23.2 0.1 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF861) AraC_binding_2 PF14525.6 gi|257386763|ref|YP_003176536.1| - 0.00012 21.8 0.1 0.00013 21.7 0.1 1.0 1 0 0 1 1 1 1 AraC-binding-like domain AraC_binding PF02311.19 gi|257386763|ref|YP_003176536.1| - 0.052 13.5 0.0 0.067 13.1 0.0 1.2 1 0 0 1 1 1 0 AraC-like ligand binding domain Pirin_C_2 PF17954.1 gi|257386763|ref|YP_003176536.1| - 0.13 12.5 0.0 0.19 11.9 0.0 1.2 1 0 0 1 1 1 0 Quercetinase C-terminal cupin domain Cpn60_TCP1 PF00118.24 gi|257386764|ref|YP_003176537.1| - 4.2e-172 573.2 18.6 4.7e-172 573.0 18.6 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family KH_1 PF00013.29 gi|257386765|ref|YP_003176538.1| - 2.2e-13 49.8 1.2 6.3e-07 29.1 0.1 2.3 2 0 0 2 2 2 2 KH domain KH_2 PF07650.17 gi|257386765|ref|YP_003176538.1| - 0.00026 20.8 3.7 0.042 13.7 0.1 2.8 2 1 0 2 2 2 2 KH domain KH_4 PF13083.6 gi|257386765|ref|YP_003176538.1| - 0.0086 15.9 1.8 1.9 8.5 0.4 2.9 2 1 0 2 2 2 2 KH domain KH_8 PF17903.1 gi|257386765|ref|YP_003176538.1| - 0.018 15.1 0.0 0.028 14.5 0.0 1.3 1 0 0 1 1 1 0 Krr1 KH1 domain RIO1 PF01163.22 gi|257386766|ref|YP_003176539.1| - 1.2e-60 204.3 0.2 4.9e-60 202.4 0.0 1.8 2 0 0 2 2 2 1 RIO1 family APH PF01636.23 gi|257386766|ref|YP_003176539.1| - 1.4e-07 31.7 0.5 8e-05 22.7 0.0 2.5 2 1 1 3 3 3 2 Phosphotransferase enzyme family Kdo PF06293.14 gi|257386766|ref|YP_003176539.1| - 4.5e-06 26.2 0.1 1.5e-05 24.4 0.1 1.8 1 1 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase PF00069.25 gi|257386766|ref|YP_003176539.1| - 0.00029 20.3 0.0 0.00044 19.7 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain Pkinase_fungal PF17667.1 gi|257386766|ref|YP_003176539.1| - 0.0009 18.1 0.0 0.0009 18.1 0.0 1.2 1 0 0 1 1 1 1 Fungal protein kinase DNA_gyraseA_C PF03989.13 gi|257386766|ref|YP_003176539.1| - 0.03 13.8 0.0 8.6 5.9 0.0 2.5 2 0 0 2 2 2 0 DNA gyrase C-terminal domain, beta-propeller WaaY PF06176.11 gi|257386766|ref|YP_003176539.1| - 0.055 13.1 0.0 0.1 12.2 0.0 1.4 1 0 0 1 1 1 0 Lipopolysaccharide core biosynthesis protein (WaaY) YrbL-PhoP_reg PF10707.9 gi|257386766|ref|YP_003176539.1| - 0.068 12.7 0.0 0.18 11.3 0.0 1.7 1 0 0 1 1 1 0 PhoP regulatory network protein YrbL eIF-1a PF01176.19 gi|257386767|ref|YP_003176540.1| - 5.2e-25 87.0 0.7 6.6e-25 86.7 0.7 1.1 1 0 0 1 1 1 1 Translation initiation factor 1A / IF-1 SCP2 PF02036.17 gi|257386768|ref|YP_003176541.1| - 5.8e-10 39.6 0.0 7.3e-10 39.3 0.0 1.1 1 0 0 1 1 1 1 SCP-2 sterol transfer family DUF4418 PF14387.6 gi|257386770|ref|YP_003176543.1| - 0.15 12.2 4.8 0.17 12.1 4.8 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4418) DUF726 PF05277.12 gi|257386770|ref|YP_003176543.1| - 3.9 6.3 8.3 4.1 6.2 8.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF726) RTX PF02382.15 gi|257386770|ref|YP_003176543.1| - 5.4 6.6 6.4 6.3 6.4 6.4 1.0 1 0 0 1 1 1 0 N-terminal domain in RTX protein DUF460 PF04312.13 gi|257386771|ref|YP_003176544.1| - 7.5e-49 165.1 0.3 1.7e-48 163.9 0.3 1.6 1 0 0 1 1 1 1 Protein of unknown function (DUF460) Fez1 PF06818.15 gi|257386771|ref|YP_003176544.1| - 0.0049 17.3 17.5 0.0049 17.3 17.5 2.0 2 0 0 2 2 2 1 Fez1 FAM76 PF16046.5 gi|257386771|ref|YP_003176544.1| - 0.0057 16.1 5.0 0.011 15.1 5.0 1.5 1 0 0 1 1 1 1 FAM76 protein Spc29 PF17082.5 gi|257386771|ref|YP_003176544.1| - 0.045 13.6 7.1 1.5 8.6 2.4 2.5 1 1 1 2 2 2 0 Spindle Pole Component 29 TBK1_CCD1 PF18394.1 gi|257386771|ref|YP_003176544.1| - 0.047 13.3 5.6 0.08 12.5 5.6 1.3 1 0 0 1 1 1 0 TANK-binding kinase 1 coiled-coil domain 1 DASH_Spc34 PF08657.10 gi|257386771|ref|YP_003176544.1| - 0.05 13.4 14.0 0.12 12.1 14.0 1.6 1 0 0 1 1 1 0 DASH complex subunit Spc34 DUF4763 PF15960.5 gi|257386771|ref|YP_003176544.1| - 0.066 12.5 9.6 0.12 11.7 9.6 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4763) Atg14 PF10186.9 gi|257386771|ref|YP_003176544.1| - 0.1 11.7 9.9 0.19 10.8 9.9 1.4 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 Herpes_UL6 PF01763.16 gi|257386771|ref|YP_003176544.1| - 0.22 10.0 2.4 0.32 9.5 2.4 1.2 1 0 0 1 1 1 0 Herpesvirus UL6 like NPV_P10 PF05531.12 gi|257386771|ref|YP_003176544.1| - 0.36 11.3 2.3 33 5.0 0.1 3.8 3 1 1 4 4 4 0 Nucleopolyhedrovirus P10 protein DUF1664 PF07889.12 gi|257386771|ref|YP_003176544.1| - 0.53 10.3 5.7 0.75 9.8 0.8 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) Exonuc_VII_L PF02601.15 gi|257386771|ref|YP_003176544.1| - 0.72 9.4 10.5 2.3 7.7 10.4 1.8 1 1 0 1 1 1 0 Exonuclease VII, large subunit SlyX PF04102.12 gi|257386771|ref|YP_003176544.1| - 0.76 10.4 12.8 3.4 8.3 2.9 3.3 1 1 1 2 2 2 0 SlyX BLOC1_2 PF10046.9 gi|257386771|ref|YP_003176544.1| - 0.99 9.7 6.3 0.45 10.8 0.6 3.0 3 0 0 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF4407 PF14362.6 gi|257386771|ref|YP_003176544.1| - 1.3 8.3 17.1 0.076 12.4 11.5 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4407) ADIP PF11559.8 gi|257386771|ref|YP_003176544.1| - 1.8 8.6 19.3 19 5.3 8.4 2.5 1 1 1 2 2 2 0 Afadin- and alpha -actinin-Binding DASH_Spc19 PF08287.11 gi|257386771|ref|YP_003176544.1| - 2.7 7.9 21.2 7.6 6.4 21.2 1.8 1 0 0 1 1 1 0 Spc19 V_ATPase_I PF01496.19 gi|257386771|ref|YP_003176544.1| - 2.8 5.7 5.6 4.4 5.1 5.6 1.3 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family TACC_C PF05010.14 gi|257386771|ref|YP_003176544.1| - 3.2 7.5 19.7 0.31 10.8 11.3 2.3 2 0 0 2 2 2 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal MPS2 PF17060.5 gi|257386771|ref|YP_003176544.1| - 4.3 6.5 10.3 8 5.6 10.1 1.5 1 1 0 1 1 1 0 Monopolar spindle protein 2 Tropomyosin_1 PF12718.7 gi|257386771|ref|YP_003176544.1| - 5.9 7.0 32.9 1.1 9.3 21.1 4.1 3 1 0 3 3 3 0 Tropomyosin like GAS PF13851.6 gi|257386771|ref|YP_003176544.1| - 6.9 6.0 20.3 2.6 7.3 7.4 2.4 2 1 0 2 2 2 0 Growth-arrest specific micro-tubule binding MatE PF01554.18 gi|257386772|ref|YP_003176545.1| - 9e-61 204.2 37.7 2.4e-36 124.8 16.9 3.0 3 0 0 3 3 3 2 MatE AsnC_trans_reg PF01037.21 gi|257386773|ref|YP_003176546.1| - 3.6e-13 49.3 0.0 6.5e-13 48.5 0.0 1.4 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|257386773|ref|YP_003176546.1| - 1.8e-11 43.4 0.2 3.5e-11 42.5 0.2 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|257386773|ref|YP_003176546.1| - 6.2e-08 32.4 0.1 1.2e-07 31.5 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_AsnC-type PF13404.6 gi|257386773|ref|YP_003176546.1| - 1.9e-07 30.8 0.2 2.9e-07 30.2 0.2 1.3 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|257386773|ref|YP_003176546.1| - 1.9e-06 27.7 0.1 4.8e-06 26.4 0.0 1.7 2 0 0 2 2 1 1 HTH domain HTH_20 PF12840.7 gi|257386773|ref|YP_003176546.1| - 1.7e-05 24.8 0.0 3.7e-05 23.7 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|257386773|ref|YP_003176546.1| - 2.7e-05 23.8 0.2 6e-05 22.7 0.1 1.6 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_28 PF13518.6 gi|257386773|ref|YP_003176546.1| - 0.00044 20.3 0.0 0.00099 19.2 0.0 1.6 2 0 0 2 2 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|257386773|ref|YP_003176546.1| - 0.00072 19.5 0.0 0.0013 18.7 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_10 PF04967.12 gi|257386773|ref|YP_003176546.1| - 0.00088 19.0 0.2 0.0031 17.3 0.0 1.9 2 0 0 2 2 2 1 HTH DNA binding domain GntR PF00392.21 gi|257386773|ref|YP_003176546.1| - 0.0014 18.3 0.2 0.0034 17.0 0.0 1.7 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family MarR PF01047.22 gi|257386773|ref|YP_003176546.1| - 0.0038 17.1 0.0 0.0082 16.1 0.0 1.5 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|257386773|ref|YP_003176546.1| - 0.0047 16.8 0.0 0.011 15.6 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_36 PF13730.6 gi|257386773|ref|YP_003176546.1| - 0.0048 16.8 0.0 0.0085 16.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Fe_dep_repress PF01325.19 gi|257386773|ref|YP_003176546.1| - 0.0051 17.0 0.1 0.017 15.3 0.0 1.9 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_IclR PF09339.10 gi|257386773|ref|YP_003176546.1| - 0.0051 16.6 0.0 0.0089 15.8 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_40 PF14493.6 gi|257386773|ref|YP_003176546.1| - 0.01 16.2 0.0 0.021 15.3 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain MarR_2 PF12802.7 gi|257386773|ref|YP_003176546.1| - 0.019 14.8 0.0 0.037 13.9 0.0 1.4 1 0 0 1 1 1 0 MarR family HTH_50 PF18024.1 gi|257386773|ref|YP_003176546.1| - 0.028 14.0 0.0 0.063 12.9 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|257386773|ref|YP_003176546.1| - 0.032 13.7 0.0 0.06 12.8 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 HTH_47 PF16221.5 gi|257386773|ref|YP_003176546.1| - 0.044 13.3 0.0 0.078 12.5 0.0 1.4 1 0 0 1 1 1 0 winged helix-turn-helix Cdc6_C PF09079.11 gi|257386773|ref|YP_003176546.1| - 0.045 13.7 0.0 0.11 12.5 0.0 1.7 2 0 0 2 2 2 0 CDC6, C terminal winged helix domain E3_UFM1_ligase PF09743.9 gi|257386773|ref|YP_003176546.1| - 0.048 13.3 0.1 0.065 12.8 0.1 1.4 1 1 0 1 1 1 0 E3 UFM1-protein ligase 1 Rrf2 PF02082.20 gi|257386773|ref|YP_003176546.1| - 0.049 14.0 0.0 0.13 12.7 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator Mga PF05043.13 gi|257386773|ref|YP_003176546.1| - 0.062 13.9 0.0 0.2 12.2 0.0 1.8 2 0 0 2 2 1 0 Mga helix-turn-helix domain Pneumo_matrix PF03393.16 gi|257386773|ref|YP_003176546.1| - 0.087 12.0 0.0 0.11 11.7 0.0 1.0 1 0 0 1 1 1 0 Pneumovirus matrix protein DUF4250 PF14056.6 gi|257386773|ref|YP_003176546.1| - 0.087 12.8 0.1 0.32 11.0 0.1 1.9 2 0 0 2 2 1 0 Domain of unknown function (DUF4250) HTH_38 PF13936.6 gi|257386773|ref|YP_003176546.1| - 0.097 12.5 0.0 0.36 10.6 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_29 PF13551.6 gi|257386773|ref|YP_003176546.1| - 0.099 12.7 0.0 0.15 12.1 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix HTH_23 PF13384.6 gi|257386773|ref|YP_003176546.1| - 0.15 11.9 0.0 0.36 10.7 0.0 1.7 2 0 0 2 2 2 0 Homeodomain-like domain Gln-synt_C PF00120.24 gi|257386774|ref|YP_003176547.1| - 7.6e-141 469.1 0.0 9.2e-141 468.8 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N PF03951.19 gi|257386774|ref|YP_003176547.1| - 8.4e-31 105.6 1.4 4.7e-30 103.1 0.0 2.4 2 0 0 2 2 2 1 Glutamine synthetase, beta-Grasp domain Gln-synt_N_2 PF16952.5 gi|257386774|ref|YP_003176547.1| - 0.0031 17.3 0.0 0.014 15.2 0.0 2.0 1 1 0 1 1 1 1 Glutamine synthetase N-terminal domain PAP2 PF01569.21 gi|257386775|ref|YP_003176548.1| - 3.8e-15 55.9 3.4 3.8e-15 55.9 3.4 2.4 3 0 0 3 3 3 1 PAP2 superfamily PAP2_3 PF14378.6 gi|257386775|ref|YP_003176548.1| - 7.4e-08 32.3 8.4 7.4e-08 32.3 8.4 2.3 2 0 0 2 2 2 1 PAP2 superfamily DUF2207 PF09972.9 gi|257386776|ref|YP_003176549.1| - 0.11 11.3 0.0 0.12 11.1 0.0 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Vir_act_alpha_C PF10400.9 gi|257386776|ref|YP_003176549.1| - 0.16 12.7 2.0 0.34 11.6 0.8 2.0 2 0 0 2 2 2 0 Virulence activator alpha C-term TRM PF02005.16 gi|257386778|ref|YP_003176551.1| - 9.7e-87 291.6 0.0 1.2e-86 291.2 0.0 1.0 1 0 0 1 1 1 1 N2,N2-dimethylguanosine tRNA methyltransferase MTS PF05175.14 gi|257386778|ref|YP_003176551.1| - 5.6e-05 22.8 0.0 0.00013 21.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase small domain zf-C3HC4_3 PF13920.6 gi|257386778|ref|YP_003176551.1| - 0.0073 16.1 0.6 0.015 15.2 0.6 1.5 1 0 0 1 1 1 1 Zinc finger, C3HC4 type (RING finger) Zn-ribbon_8 PF09723.10 gi|257386778|ref|YP_003176551.1| - 0.014 15.5 2.3 0.047 13.8 2.0 2.0 2 0 0 2 2 2 0 Zinc ribbon domain Cons_hypoth95 PF03602.15 gi|257386778|ref|YP_003176551.1| - 0.014 15.1 0.0 0.021 14.4 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical protein 95 zinc-ribbons_6 PF07191.12 gi|257386778|ref|YP_003176551.1| - 0.097 12.7 2.1 0.11 12.5 0.5 1.8 2 0 0 2 2 2 0 zinc-ribbons Methyltransf_25 PF13649.6 gi|257386778|ref|YP_003176551.1| - 0.1 13.3 0.0 0.25 12.1 0.0 1.7 1 0 0 1 1 1 0 Methyltransferase domain PrmA PF06325.13 gi|257386778|ref|YP_003176551.1| - 0.18 11.2 0.0 0.28 10.5 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) HypA PF01155.19 gi|257386778|ref|YP_003176551.1| - 0.18 11.8 0.1 0.35 10.9 0.1 1.4 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA RNA_POL_M_15KD PF02150.16 gi|257386778|ref|YP_003176551.1| - 0.79 9.7 2.3 10 6.1 0.1 2.6 3 0 0 3 3 3 0 RNA polymerases M/15 Kd subunit SWIM PF04434.17 gi|257386779|ref|YP_003176552.1| - 0.035 13.8 2.6 0.17 11.6 2.6 1.9 1 1 0 1 1 1 0 SWIM zinc finger HisKA_7TM PF16927.5 gi|257386780|ref|YP_003176553.1| - 4.1e-33 115.3 19.7 5.4e-33 114.9 19.7 1.1 1 0 0 1 1 1 1 N-terminal 7TM region of histidine kinase HATPase_c PF02518.26 gi|257386780|ref|YP_003176553.1| - 9.6e-08 32.5 0.0 4.8e-07 30.3 0.0 2.1 1 1 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|257386780|ref|YP_003176553.1| - 1.7e-05 25.0 0.5 0.00015 22.0 0.5 2.4 1 1 0 1 1 1 1 PAS fold HisKA PF00512.25 gi|257386780|ref|YP_003176553.1| - 4.5e-05 23.4 0.1 0.00012 22.0 0.0 1.8 1 1 0 1 1 1 1 His Kinase A (phospho-acceptor) domain PAS PF00989.25 gi|257386780|ref|YP_003176553.1| - 0.00014 21.9 0.1 0.00075 19.5 0.1 2.1 1 1 0 1 1 1 1 PAS fold HATPase_c_2 PF13581.6 gi|257386780|ref|YP_003176553.1| - 0.00017 21.5 0.3 0.0006 19.8 0.1 2.0 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain HisKA_4TM PF16926.5 gi|257386780|ref|YP_003176553.1| - 0.002 17.7 0.1 0.002 17.7 0.1 2.5 2 0 0 2 2 2 1 Archaeal 4TM region of histidine kinase PAS_8 PF13188.7 gi|257386780|ref|YP_003176553.1| - 0.028 14.4 0.0 0.09 12.8 0.0 1.9 1 0 0 1 1 1 0 PAS domain GATase PF00117.28 gi|257386781|ref|YP_003176554.1| - 1.3e-19 70.7 0.0 1.9e-19 70.2 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.14 gi|257386781|ref|YP_003176554.1| - 4.1e-08 33.1 0.1 2.3e-07 30.6 0.1 2.0 1 1 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain SNO PF01174.19 gi|257386781|ref|YP_003176554.1| - 9.5e-07 28.8 0.0 0.014 15.2 0.0 2.1 2 0 0 2 2 2 2 SNO glutamine amidotransferase family Peptidase_C26 PF07722.13 gi|257386781|ref|YP_003176554.1| - 1.6e-05 24.8 0.0 0.016 15.0 0.0 2.4 2 0 0 2 2 2 2 Peptidase C26 DJ-1_PfpI PF01965.24 gi|257386781|ref|YP_003176554.1| - 0.0027 17.5 0.0 0.004 17.0 0.0 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family UDG PF03167.19 gi|257386782|ref|YP_003176555.1| - 1.1e-40 139.2 0.0 1.3e-40 138.9 0.0 1.0 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily DUF3592 PF12158.8 gi|257386783|ref|YP_003176556.1| - 7.2e-13 48.8 1.5 8.8e-13 48.6 1.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3592) Tad PF13400.6 gi|257386783|ref|YP_003176556.1| - 6.5 7.1 15.0 1.7 9.0 0.3 2.5 2 0 0 2 2 2 0 Putative Flp pilus-assembly TadE/G-like Ribosomal_L40e PF01020.17 gi|257386784|ref|YP_003176557.1| - 1.4e-05 24.9 6.5 1.8e-05 24.6 6.5 1.1 1 0 0 1 1 1 1 Ribosomal L40e family DZR PF12773.7 gi|257386784|ref|YP_003176557.1| - 0.0015 18.5 1.1 0.0015 18.5 1.1 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|257386784|ref|YP_003176557.1| - 0.0041 16.8 2.2 0.0057 16.3 2.2 1.3 1 0 0 1 1 1 1 zinc-ribbon domain DNA_RNApol_7kD PF03604.13 gi|257386784|ref|YP_003176557.1| - 0.011 15.4 5.1 0.02 14.6 5.1 1.4 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Ribosomal_L37e PF01907.19 gi|257386784|ref|YP_003176557.1| - 0.03 14.5 2.7 0.041 14.1 2.7 1.3 1 0 0 1 1 1 0 Ribosomal protein L37e zf-ribbon_3 PF13248.6 gi|257386784|ref|YP_003176557.1| - 0.049 13.1 2.8 0.064 12.7 2.8 1.2 1 0 0 1 1 1 0 zinc-ribbon domain DHHC PF01529.20 gi|257386784|ref|YP_003176557.1| - 0.1 12.7 2.0 0.12 12.5 2.0 1.1 1 0 0 1 1 1 0 DHHC palmitoyltransferase TBP PF00352.21 gi|257386786|ref|YP_003176559.1| - 4.8e-58 193.1 0.0 5.9e-28 96.6 0.0 2.0 2 0 0 2 2 2 2 Transcription factor TFIID (or TATA-binding protein, TBP) T4bSS_IcmS PF12608.8 gi|257386786|ref|YP_003176559.1| - 9.8e-05 22.6 0.0 0.016 15.5 0.0 2.2 1 1 0 2 2 2 2 Type IVb secretion, IcmS, effector-recruitment DUF3378 PF11858.8 gi|257386786|ref|YP_003176559.1| - 0.00021 21.4 0.0 0.39 10.9 0.0 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF3378) PucR PF07905.11 gi|257386786|ref|YP_003176559.1| - 0.1 12.9 0.0 4.8 7.5 0.0 2.4 2 0 0 2 2 2 0 Purine catabolism regulatory protein-like family UPF0020 PF01170.18 gi|257386787|ref|YP_003176560.1| - 1.9e-25 89.8 0.2 1.1e-24 87.3 0.2 2.0 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_25 PF13649.6 gi|257386787|ref|YP_003176560.1| - 1.4e-08 35.3 1.4 3e-08 34.3 0.4 2.2 2 2 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|257386787|ref|YP_003176560.1| - 9.5e-07 29.4 0.1 2.5e-06 28.0 0.1 1.8 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|257386787|ref|YP_003176560.1| - 1.4e-06 28.2 0.0 2e-06 27.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|257386787|ref|YP_003176560.1| - 3e-06 27.0 0.0 8.2e-06 25.6 0.0 1.6 2 0 0 2 2 2 1 Conserved hypothetical protein 95 AviRa PF11599.8 gi|257386787|ref|YP_003176560.1| - 4.7e-05 23.0 0.0 0.095 12.1 0.0 2.4 1 1 1 2 2 2 2 RRNA methyltransferase AviRa THUMP PF02926.17 gi|257386787|ref|YP_003176560.1| - 0.0049 17.0 0.0 0.0089 16.1 0.0 1.4 1 0 0 1 1 1 1 THUMP domain Ubie_methyltran PF01209.18 gi|257386787|ref|YP_003176560.1| - 0.0099 15.2 0.0 0.018 14.4 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|257386787|ref|YP_003176560.1| - 0.012 15.5 0.1 0.041 13.7 0.0 1.7 2 1 0 2 2 2 0 Methyltransferase domain N6_Mtase PF02384.16 gi|257386787|ref|YP_003176560.1| - 0.014 14.7 0.0 0.023 14.0 0.0 1.4 1 1 0 1 1 1 0 N-6 DNA Methylase Pro_Al_protease PF02983.14 gi|257386787|ref|YP_003176560.1| - 0.029 14.4 3.4 0.029 14.4 3.4 3.3 2 1 0 3 3 3 0 Alpha-lytic protease prodomain Methyltransf_15 PF09445.10 gi|257386787|ref|YP_003176560.1| - 0.15 11.6 0.0 0.2 11.2 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase HypA PF01155.19 gi|257386790|ref|YP_003176563.1| - 0.024 14.6 1.4 0.027 14.5 1.4 1.0 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|257386790|ref|YP_003176563.1| - 0.066 13.3 5.8 0.13 12.4 5.8 1.5 1 1 0 1 1 1 0 Zinc ribbon domain DUF359 PF04019.12 gi|257386791|ref|YP_003176564.1| - 8.9e-38 128.8 0.0 1.1e-37 128.5 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF359) HisKA PF00512.25 gi|257386791|ref|YP_003176564.1| - 0.1 12.7 0.1 0.24 11.5 0.0 1.7 2 0 0 2 2 2 0 His Kinase A (phospho-acceptor) domain Secretin_N PF03958.17 gi|257386791|ref|YP_003176564.1| - 0.11 12.9 0.0 0.16 12.4 0.0 1.4 1 0 0 1 1 1 0 Bacterial type II/III secretion system short domain Spt4 PF06093.13 gi|257386792|ref|YP_003176565.1| - 7.6e-14 51.6 0.3 8.9e-14 51.4 0.3 1.1 1 0 0 1 1 1 1 Spt4/RpoE2 zinc finger zf-RRN7 PF11781.8 gi|257386792|ref|YP_003176565.1| - 0.074 12.8 3.6 0.21 11.3 0.1 2.3 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 NOB1_Zn_bind PF08772.11 gi|257386792|ref|YP_003176565.1| - 0.1 12.8 0.4 0.1 12.7 0.4 1.2 1 1 0 1 1 1 0 Nin one binding (NOB1) Zn-ribbon like SHS2_Rpb7-N PF03876.17 gi|257386793|ref|YP_003176566.1| - 4.7e-16 58.9 0.0 7.4e-16 58.3 0.0 1.3 1 0 0 1 1 1 1 SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 S1 PF00575.23 gi|257386793|ref|YP_003176566.1| - 4.3e-14 52.6 0.1 8e-14 51.8 0.1 1.4 1 0 0 1 1 1 1 S1 RNA binding domain RNA_pol_Rbc25 PF08292.12 gi|257386793|ref|YP_003176566.1| - 0.016 15.4 0.0 0.023 14.9 0.0 1.2 1 0 0 1 1 1 0 RNA polymerase III subunit Rpc25 PUA_3 PF17785.1 gi|257386793|ref|YP_003176566.1| - 0.49 10.2 1.8 1.4 8.8 0.8 2.4 2 1 0 2 2 2 0 PUA-like domain PIN_9 PF18477.1 gi|257386794|ref|YP_003176567.1| - 2.1e-40 137.6 0.2 2.4e-40 137.5 0.2 1.0 1 0 0 1 1 1 1 PIN like domain DUF188 PF02639.14 gi|257386794|ref|YP_003176567.1| - 1.6e-06 27.8 0.7 2.3e-06 27.3 0.7 1.3 1 0 0 1 1 1 1 Uncharacterized BCR, YaiI/YqxD family COG1671 PIN_4 PF13638.6 gi|257386794|ref|YP_003176567.1| - 0.00053 20.3 0.0 0.00064 20.0 0.0 1.3 1 1 0 1 1 1 1 PIN domain eIF2_C PF09173.11 gi|257386795|ref|YP_003176568.1| - 2.4e-29 101.4 0.1 5.4e-29 100.3 0.1 1.6 1 0 0 1 1 1 1 Initiation factor eIF2 gamma, C terminal GTP_EFTU PF00009.27 gi|257386795|ref|YP_003176568.1| - 2.5e-29 102.2 2.1 1.4e-28 99.7 2.1 1.9 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D2 PF03144.25 gi|257386795|ref|YP_003176568.1| - 1e-05 25.8 0.4 3e-05 24.3 0.4 1.8 1 0 0 1 1 1 1 Elongation factor Tu domain 2 RsgA_GTPase PF03193.16 gi|257386795|ref|YP_003176568.1| - 4.6e-05 23.4 0.3 0.0065 16.4 0.1 2.2 2 0 0 2 2 2 1 RsgA GTPase MMR_HSR1 PF01926.23 gi|257386795|ref|YP_003176568.1| - 7.9e-05 22.7 0.0 0.00017 21.7 0.0 1.6 1 0 0 1 1 1 1 50S ribosome-binding GTPase PduV-EutP PF10662.9 gi|257386795|ref|YP_003176568.1| - 0.0048 16.7 0.3 0.14 11.9 0.0 2.2 2 0 0 2 2 2 1 Ethanolamine utilisation - propanediol utilisation MMR_HSR1_Xtn PF16897.5 gi|257386795|ref|YP_003176568.1| - 0.032 14.2 0.0 0.059 13.4 0.0 1.4 1 0 0 1 1 1 0 C-terminal region of MMR_HSR1 domain FeoB_N PF02421.18 gi|257386795|ref|YP_003176568.1| - 0.046 13.3 0.3 7.8 6.0 0.0 2.4 2 0 0 2 2 2 0 Ferrous iron transport protein B SRPRB PF09439.10 gi|257386795|ref|YP_003176568.1| - 0.059 12.8 0.1 2 7.8 0.1 2.1 1 1 0 1 1 1 0 Signal recognition particle receptor beta subunit Response_reg PF00072.24 gi|257386796|ref|YP_003176569.1| - 3.7e-18 65.7 0.3 4.3e-18 65.5 0.3 1.1 1 0 0 1 1 1 1 Response regulator receiver domain PhoU PF01895.19 gi|257386796|ref|YP_003176569.1| - 0.0051 17.2 0.3 0.031 14.7 0.2 2.0 2 0 0 2 2 2 1 PhoU domain LRR_9 PF14580.6 gi|257386796|ref|YP_003176569.1| - 0.038 13.5 0.0 0.048 13.2 0.0 1.2 1 0 0 1 1 1 0 Leucine-rich repeat Bim_N PF06773.11 gi|257386797|ref|YP_003176570.1| - 0.11 12.2 0.2 0.22 11.2 0.2 1.6 1 0 0 1 1 1 0 Bim protein N-terminus DUF418 PF04235.12 gi|257386798|ref|YP_003176571.1| - 1.1e-45 155.5 16.9 1.1e-45 155.5 16.9 2.7 2 1 0 2 2 2 1 Protein of unknown function (DUF418) Lactamase_B_2 PF12706.7 gi|257386799|ref|YP_003176572.1| - 2.2e-22 79.5 1.6 3.1e-22 79.1 1.6 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|257386799|ref|YP_003176572.1| - 0.00024 21.2 6.8 0.00043 20.4 6.8 1.5 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily AAA PF00004.29 gi|257386800|ref|YP_003176573.1| - 5.8e-39 133.5 0.0 1.2e-38 132.5 0.0 1.6 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|257386800|ref|YP_003176573.1| - 3.1e-11 42.9 0.1 1e-10 41.2 0.1 1.9 1 0 0 1 1 1 1 AAA+ lid domain AAA_5 PF07728.14 gi|257386800|ref|YP_003176573.1| - 7.7e-06 25.9 0.1 5.7e-05 23.1 0.0 2.5 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_33 PF13671.6 gi|257386800|ref|YP_003176573.1| - 0.0001 22.5 1.9 0.00037 20.7 0.0 2.7 3 2 0 3 3 2 1 AAA domain AAA_22 PF13401.6 gi|257386800|ref|YP_003176573.1| - 0.00024 21.4 0.4 0.035 14.4 0.0 3.2 2 1 0 3 3 3 1 AAA domain AAA_18 PF13238.6 gi|257386800|ref|YP_003176573.1| - 0.00035 21.1 0.0 0.0059 17.2 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_28 PF13521.6 gi|257386800|ref|YP_003176573.1| - 0.0004 20.7 3.6 0.0054 17.0 0.0 3.1 3 0 0 3 3 3 1 AAA domain AAA_16 PF13191.6 gi|257386800|ref|YP_003176573.1| - 0.00044 20.7 2.8 0.002 18.5 0.7 3.1 2 1 0 2 2 2 1 AAA ATPase domain AAA_7 PF12775.7 gi|257386800|ref|YP_003176573.1| - 0.00075 19.1 0.0 0.0014 18.2 0.0 1.4 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_2 PF07724.14 gi|257386800|ref|YP_003176573.1| - 0.00081 19.5 0.0 0.0026 17.9 0.0 1.9 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.12 gi|257386800|ref|YP_003176573.1| - 0.0012 18.6 0.0 0.0032 17.2 0.0 1.8 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain TIP49 PF06068.13 gi|257386800|ref|YP_003176573.1| - 0.0013 18.1 0.0 0.0038 16.5 0.0 1.8 2 0 0 2 2 2 1 TIP49 P-loop domain Cytidylate_kin2 PF13189.6 gi|257386800|ref|YP_003176573.1| - 0.0024 18.0 0.1 0.0081 16.3 0.0 1.9 2 0 0 2 2 2 1 Cytidylate kinase-like family IstB_IS21 PF01695.17 gi|257386800|ref|YP_003176573.1| - 0.0075 16.0 0.0 0.024 14.4 0.0 1.9 1 1 0 1 1 1 1 IstB-like ATP binding protein SKI PF01202.22 gi|257386800|ref|YP_003176573.1| - 0.01 16.0 0.0 0.024 14.8 0.0 1.6 1 0 0 1 1 1 0 Shikimate kinase AAA_17 PF13207.6 gi|257386800|ref|YP_003176573.1| - 0.01 16.2 0.0 0.035 14.5 0.0 1.9 1 0 0 1 1 1 0 AAA domain DUF815 PF05673.13 gi|257386800|ref|YP_003176573.1| - 0.012 14.8 0.0 0.02 14.1 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) Mg_chelatase PF01078.21 gi|257386800|ref|YP_003176573.1| - 0.012 15.0 0.0 0.023 14.1 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI Cytidylate_kin PF02224.18 gi|257386800|ref|YP_003176573.1| - 0.013 15.3 0.0 0.038 13.7 0.0 1.8 1 0 0 1 1 1 0 Cytidylate kinase AAA_3 PF07726.11 gi|257386800|ref|YP_003176573.1| - 0.013 15.3 0.3 0.044 13.7 0.0 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) MMR_HSR1 PF01926.23 gi|257386800|ref|YP_003176573.1| - 0.018 15.1 0.0 0.043 13.9 0.0 1.7 1 0 0 1 1 1 0 50S ribosome-binding GTPase AAA_25 PF13481.6 gi|257386800|ref|YP_003176573.1| - 0.022 14.3 0.7 0.082 12.5 0.0 2.4 2 1 0 2 2 2 0 AAA domain AAA_11 PF13086.6 gi|257386800|ref|YP_003176573.1| - 0.026 14.3 0.0 0.046 13.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain Sigma54_activ_2 PF14532.6 gi|257386800|ref|YP_003176573.1| - 0.037 14.2 0.0 0.24 11.5 0.0 2.1 2 0 0 2 2 2 0 Sigma-54 interaction domain ABC_tran PF00005.27 gi|257386800|ref|YP_003176573.1| - 0.038 14.5 0.0 0.13 12.8 0.0 1.8 1 1 0 1 1 1 0 ABC transporter RNA_helicase PF00910.22 gi|257386800|ref|YP_003176573.1| - 0.039 14.3 0.0 0.071 13.5 0.0 1.5 1 0 0 1 1 1 0 RNA helicase T2SSE PF00437.20 gi|257386800|ref|YP_003176573.1| - 0.059 12.4 0.0 0.11 11.5 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein ResIII PF04851.15 gi|257386800|ref|YP_003176573.1| - 0.086 12.8 0.0 0.16 12.0 0.0 1.5 1 0 0 1 1 1 0 Type III restriction enzyme, res subunit NACHT PF05729.12 gi|257386800|ref|YP_003176573.1| - 0.1 12.5 0.2 3 7.7 0.0 2.6 2 1 0 3 3 3 0 NACHT domain Thiolase_N PF00108.23 gi|257386801|ref|YP_003176574.1| - 2.3e-75 253.3 1.1 4e-75 252.5 1.1 1.4 1 1 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|257386801|ref|YP_003176574.1| - 8.4e-42 141.7 0.1 2.1e-41 140.4 0.0 1.7 2 0 0 2 2 2 1 Thiolase, C-terminal domain ketoacyl-synt PF00109.26 gi|257386801|ref|YP_003176574.1| - 1.7e-05 24.5 0.9 3.5e-05 23.5 0.9 1.5 1 0 0 1 1 1 1 Beta-ketoacyl synthase, N-terminal domain ACP_syn_III PF08545.10 gi|257386801|ref|YP_003176574.1| - 0.0056 16.5 2.2 0.067 13.1 0.3 2.4 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 4HBT PF03061.22 gi|257386802|ref|YP_003176575.1| - 6.8e-15 55.2 0.4 1.1e-14 54.5 0.4 1.4 1 0 0 1 1 1 1 Thioesterase superfamily DUF4442 PF14539.6 gi|257386802|ref|YP_003176575.1| - 1.1e-09 38.5 0.0 1.6e-09 38.0 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4442) 4HBT_3 PF13622.6 gi|257386802|ref|YP_003176575.1| - 9.5e-05 22.8 0.2 0.00012 22.5 0.2 1.1 1 0 0 1 1 1 1 Thioesterase-like superfamily HTH_20 PF12840.7 gi|257386803|ref|YP_003176576.1| - 5.9e-13 48.7 1.6 2.4e-12 46.7 0.2 2.5 3 0 0 3 3 3 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|257386803|ref|YP_003176576.1| - 1.1e-06 28.4 0.2 2.9e-06 27.1 0.2 1.7 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|257386803|ref|YP_003176576.1| - 0.013 15.1 0.0 0.025 14.2 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding ComX PF05952.12 gi|257386803|ref|YP_003176576.1| - 0.036 14.0 0.0 0.075 13.0 0.0 1.5 1 0 0 1 1 1 0 Bacillus competence pheromone ComX HTH_27 PF13463.6 gi|257386803|ref|YP_003176576.1| - 0.083 13.4 0.1 0.2 12.1 0.1 1.6 1 0 0 1 1 1 0 Winged helix DNA-binding domain TrkA_N PF02254.18 gi|257386804|ref|YP_003176577.1| - 1.2e-31 109.3 1.7 2.5e-31 108.3 1.7 1.5 1 0 0 1 1 1 1 TrkA-N domain Na_H_Exchanger PF00999.21 gi|257386804|ref|YP_003176577.1| - 1.7e-31 109.4 40.2 2.3e-31 108.9 40.2 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_C PF02080.21 gi|257386804|ref|YP_003176577.1| - 5.1e-11 42.2 0.6 5.4e-09 35.8 0.0 2.6 2 0 0 2 2 2 1 TrkA-C domain NAD_binding_7 PF13241.6 gi|257386804|ref|YP_003176577.1| - 1.4e-06 28.7 0.7 3.5e-06 27.4 0.3 1.8 2 0 0 2 2 1 1 Putative NAD(P)-binding F420_oxidored PF03807.17 gi|257386804|ref|YP_003176577.1| - 3.9e-05 24.2 1.7 0.0024 18.4 0.6 2.7 1 1 1 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent FAD_binding_3 PF01494.19 gi|257386804|ref|YP_003176577.1| - 0.00079 18.8 0.0 0.0011 18.3 0.0 1.3 1 0 0 1 1 1 1 FAD binding domain Epimerase PF01370.21 gi|257386804|ref|YP_003176577.1| - 0.0016 18.0 0.2 0.0023 17.4 0.2 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 gi|257386804|ref|YP_003176577.1| - 0.0018 18.2 2.8 0.0066 16.4 2.8 1.9 1 1 0 1 1 1 1 NAD(P)H-binding DAO PF01266.24 gi|257386804|ref|YP_003176577.1| - 0.0023 17.6 0.1 0.0038 16.8 0.1 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|257386804|ref|YP_003176577.1| - 0.0046 17.2 0.1 0.015 15.5 0.1 2.0 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Sacchrp_dh_NADP PF03435.18 gi|257386804|ref|YP_003176577.1| - 0.0054 17.0 0.4 0.012 15.9 0.3 1.7 1 1 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain IlvN PF07991.12 gi|257386804|ref|YP_003176577.1| - 0.0092 15.6 0.2 0.018 14.6 0.2 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain ApbA PF02558.16 gi|257386804|ref|YP_003176577.1| - 0.015 14.9 0.1 0.03 13.9 0.1 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Pyr_redox PF00070.27 gi|257386804|ref|YP_003176577.1| - 0.017 15.7 0.4 0.047 14.2 0.4 1.8 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|257386804|ref|YP_003176577.1| - 0.026 13.7 0.1 0.056 12.7 0.1 1.5 1 0 0 1 1 1 0 Thi4 family NAD_binding_2 PF03446.15 gi|257386804|ref|YP_003176577.1| - 0.028 14.6 0.0 0.052 13.7 0.0 1.5 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Pyr_redox_2 PF07992.14 gi|257386804|ref|YP_003176577.1| - 0.045 13.0 0.1 0.084 12.1 0.1 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|257386804|ref|YP_003176577.1| - 0.047 13.0 0.3 0.11 11.7 0.3 1.8 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_Gly3P_dh_N PF01210.23 gi|257386804|ref|YP_003176577.1| - 0.057 13.4 0.0 0.13 12.2 0.0 1.7 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus HI0933_like PF03486.14 gi|257386804|ref|YP_003176577.1| - 0.059 12.1 0.1 0.093 11.4 0.1 1.3 1 0 0 1 1 1 0 HI0933-like protein Pyr_redox_3 PF13738.6 gi|257386804|ref|YP_003176577.1| - 0.059 12.6 0.3 0.1 11.8 0.3 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase UDPG_MGDP_dh_N PF03721.14 gi|257386804|ref|YP_003176577.1| - 0.067 12.8 0.1 0.11 12.1 0.1 1.3 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Lycopene_cycl PF05834.12 gi|257386804|ref|YP_003176577.1| - 0.085 11.9 0.0 0.13 11.3 0.0 1.2 1 0 0 1 1 1 0 Lycopene cyclase protein DFP PF04127.15 gi|257386804|ref|YP_003176577.1| - 0.087 12.6 0.3 0.15 11.9 0.3 1.3 1 0 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein 2-Hacid_dh_C PF02826.19 gi|257386804|ref|YP_003176577.1| - 0.09 12.1 0.1 0.19 11.1 0.1 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 3HCDH_N PF02737.18 gi|257386804|ref|YP_003176577.1| - 0.09 12.6 0.2 0.17 11.7 0.2 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Lactamase_B PF00753.27 gi|257386805|ref|YP_003176578.1| - 8.1e-25 88.0 9.9 1.2e-24 87.4 9.9 1.2 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|257386805|ref|YP_003176578.1| - 4.8e-06 26.2 1.8 4.8e-06 26.2 1.8 2.0 3 1 0 3 3 3 1 Beta-lactamase superfamily domain peroxidase PF00141.23 gi|257386806|ref|YP_003176579.1| - 2.5e-91 305.5 0.0 1.9e-50 171.7 0.0 2.2 2 0 0 2 2 2 2 Peroxidase DZR PF12773.7 gi|257386807|ref|YP_003176580.1| - 0.0035 17.3 9.6 0.6 10.2 2.1 2.8 1 1 1 2 2 2 2 Double zinc ribbon zf_Rg PF17915.1 gi|257386807|ref|YP_003176580.1| - 0.011 15.1 4.5 2.3 7.7 1.7 2.9 2 1 1 3 3 3 0 Reverse gyrase zinc finger RNHCP PF12647.7 gi|257386807|ref|YP_003176580.1| - 0.016 15.2 0.4 0.016 15.2 0.4 2.3 2 1 1 3 3 3 0 RNHCP domain zf-CHY PF05495.12 gi|257386807|ref|YP_003176580.1| - 0.034 14.6 4.4 0.13 12.7 4.4 1.7 1 1 0 1 1 1 0 CHY zinc finger DUF4568 PF15132.6 gi|257386807|ref|YP_003176580.1| - 0.088 12.2 0.2 0.1 12.0 0.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4568) zf-piccolo PF05715.13 gi|257386807|ref|YP_003176580.1| - 0.11 12.6 4.9 0.68 10.1 0.3 2.8 3 0 0 3 3 3 0 Piccolo Zn-finger zf-LITAF-like PF10601.9 gi|257386807|ref|YP_003176580.1| - 0.16 12.3 6.5 10 6.4 0.0 3.0 3 0 0 3 3 3 0 LITAF-like zinc ribbon domain TF_Zn_Ribbon PF08271.12 gi|257386807|ref|YP_003176580.1| - 2.2 7.9 12.7 4.8 6.8 3.3 3.6 3 1 1 4 4 4 0 TFIIB zinc-binding zinc_ribbon_9 PF14369.6 gi|257386807|ref|YP_003176580.1| - 2.7 8.3 16.5 3.1 8.1 4.7 3.7 2 1 1 3 3 3 0 zinc-ribbon zf-RING_4 PF14570.6 gi|257386807|ref|YP_003176580.1| - 5.5 6.9 10.8 45 3.9 7.2 2.9 2 1 0 2 2 2 0 RING/Ubox like zinc-binding domain Zn-ribbon_8 PF09723.10 gi|257386807|ref|YP_003176580.1| - 5.8 7.1 11.4 3.2e+02 1.5 11.4 3.1 1 1 0 1 1 1 0 Zinc ribbon domain Anti-TRAP PF15777.5 gi|257386807|ref|YP_003176580.1| - 6.3 6.8 8.2 1.8 8.6 4.1 2.0 2 0 0 2 2 2 0 Tryptophan RNA-binding attenuator protein inhibitory protein Abhydrolase_1 PF00561.20 gi|257386808|ref|YP_003176581.1| - 4.5e-18 65.8 0.0 1.8e-14 54.0 0.0 2.1 1 1 0 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|257386808|ref|YP_003176581.1| - 1.6e-16 61.6 15.2 2.1e-16 61.2 15.2 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|257386808|ref|YP_003176581.1| - 0.0019 17.5 0.0 0.011 15.0 0.0 2.0 2 0 0 2 2 2 1 Serine aminopeptidase, S33 DUF1057 PF06342.12 gi|257386808|ref|YP_003176581.1| - 0.0053 15.8 0.0 0.0073 15.4 0.0 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase of unknown function (DUF1057) Peptidase_S9 PF00326.21 gi|257386808|ref|YP_003176581.1| - 0.01 15.3 0.0 0.67 9.4 0.0 2.1 2 0 0 2 2 2 0 Prolyl oligopeptidase family Ser_hydrolase PF06821.13 gi|257386808|ref|YP_003176581.1| - 0.026 14.4 0.1 0.19 11.5 0.0 2.3 3 0 0 3 3 3 0 Serine hydrolase S6PP PF05116.13 gi|257386808|ref|YP_003176581.1| - 0.038 13.5 0.0 0.063 12.8 0.0 1.2 1 0 0 1 1 1 0 Sucrose-6F-phosphate phosphohydrolase Seryl_tRNA_N PF02403.22 gi|257386809|ref|YP_003176582.1| - 4.4e-27 94.4 5.2 6.7e-27 93.8 5.2 1.3 1 0 0 1 1 1 1 Seryl-tRNA synthetase N-terminal domain tRNA-synt_2b PF00587.25 gi|257386809|ref|YP_003176582.1| - 5.7e-26 91.6 0.0 8.5e-26 91.0 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) APG6_N PF17675.1 gi|257386809|ref|YP_003176582.1| - 0.35 11.4 10.9 0.79 10.3 10.9 1.5 1 0 0 1 1 1 0 Apg6 coiled-coil region TMF_TATA_bd PF12325.8 gi|257386809|ref|YP_003176582.1| - 0.39 11.0 8.2 0.28 11.4 6.5 1.6 2 0 0 2 2 2 0 TATA element modulatory factor 1 TATA binding UPF0242 PF06785.11 gi|257386809|ref|YP_003176582.1| - 1.2 9.2 5.8 2 8.5 5.8 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus SOGA PF11365.8 gi|257386809|ref|YP_003176582.1| - 1.7 9.8 6.6 1.5 10.0 3.1 2.2 2 0 0 2 2 2 0 Protein SOGA ZapB PF06005.12 gi|257386809|ref|YP_003176582.1| - 2 8.9 11.0 6.9 7.2 4.0 2.8 2 1 1 3 3 3 0 Cell division protein ZapB HTH_AsnC-type PF13404.6 gi|257386810|ref|YP_003176583.1| - 1.6e-12 47.0 0.7 3.3e-12 46.0 0.7 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|257386810|ref|YP_003176583.1| - 8.2e-11 41.3 0.3 1.3e-10 40.7 0.3 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|257386810|ref|YP_003176583.1| - 2.5e-07 30.6 0.1 4.2e-07 29.8 0.1 1.4 1 0 0 1 1 1 1 HTH domain HTH_20 PF12840.7 gi|257386810|ref|YP_003176583.1| - 8.9e-05 22.5 0.0 0.00016 21.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Fe_dep_repress PF01325.19 gi|257386810|ref|YP_003176583.1| - 0.00045 20.4 0.0 0.0019 18.4 0.0 1.9 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.7 gi|257386810|ref|YP_003176583.1| - 0.00059 19.7 0.0 0.001 18.9 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_DeoR PF08220.12 gi|257386810|ref|YP_003176583.1| - 0.00065 19.4 1.5 0.00082 19.1 0.1 1.9 3 0 0 3 3 3 1 DeoR-like helix-turn-helix domain MarR PF01047.22 gi|257386810|ref|YP_003176583.1| - 0.00078 19.3 0.0 0.0014 18.5 0.0 1.3 1 0 0 1 1 1 1 MarR family GntR PF00392.21 gi|257386810|ref|YP_003176583.1| - 0.0068 16.0 0.3 0.017 14.8 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_IclR PF09339.10 gi|257386810|ref|YP_003176583.1| - 0.0079 16.0 0.0 0.016 15.0 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain Rrf2 PF02082.20 gi|257386810|ref|YP_003176583.1| - 0.0098 16.2 0.0 0.019 15.3 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator HTH_5 PF01022.20 gi|257386810|ref|YP_003176583.1| - 0.012 15.5 0.0 0.022 14.6 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_23 PF13384.6 gi|257386810|ref|YP_003176583.1| - 0.013 15.2 0.0 0.021 14.6 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain HTH_Crp_2 PF13545.6 gi|257386810|ref|YP_003176583.1| - 0.017 15.0 0.1 0.058 13.4 0.0 1.9 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain AsnC_trans_reg PF01037.21 gi|257386810|ref|YP_003176583.1| - 0.02 14.9 0.0 0.041 13.8 0.0 1.5 1 0 0 1 1 1 0 Lrp/AsnC ligand binding domain HrcA_DNA-bdg PF03444.15 gi|257386810|ref|YP_003176583.1| - 0.026 14.2 0.0 0.07 12.8 0.0 1.7 2 0 0 2 2 2 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_6 PF01418.17 gi|257386810|ref|YP_003176583.1| - 0.027 14.5 0.0 0.046 13.7 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family HTH_50 PF18024.1 gi|257386810|ref|YP_003176583.1| - 0.049 13.2 0.0 0.085 12.5 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_28 PF13518.6 gi|257386810|ref|YP_003176583.1| - 0.054 13.6 0.0 0.11 12.7 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Put_DNA-bind_N PF06971.13 gi|257386810|ref|YP_003176583.1| - 0.058 13.4 0.1 0.12 12.4 0.1 1.6 1 0 0 1 1 1 0 Putative DNA-binding protein N-terminus MerR PF00376.23 gi|257386810|ref|YP_003176583.1| - 0.067 13.0 0.2 0.5 10.2 0.2 2.3 1 1 0 1 1 1 0 MerR family regulatory protein HTH_36 PF13730.6 gi|257386810|ref|YP_003176583.1| - 0.069 13.1 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Nuc_N PF14448.6 gi|257386810|ref|YP_003176583.1| - 0.072 12.9 0.6 0.13 12.1 0.1 1.6 2 0 0 2 2 1 0 Nuclease N terminal TrmB PF01978.19 gi|257386810|ref|YP_003176583.1| - 0.091 12.7 0.0 0.16 11.9 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_30 PF13556.6 gi|257386810|ref|YP_003176583.1| - 0.095 12.5 0.1 0.19 11.5 0.1 1.5 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain DUF2250 PF10007.9 gi|257386810|ref|YP_003176583.1| - 0.15 12.2 0.0 0.29 11.3 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) AA_permease_2 PF13520.6 gi|257386811|ref|YP_003176584.1| - 7.4e-44 150.2 36.3 9.4e-44 149.9 36.3 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|257386811|ref|YP_003176584.1| - 4.2e-41 141.1 39.6 5.5e-41 140.7 39.6 1.1 1 0 0 1 1 1 1 Amino acid permease Usp PF00582.26 gi|257386811|ref|YP_003176584.1| - 4.2e-11 43.5 3.8 9.1e-11 42.4 3.8 1.6 1 0 0 1 1 1 1 Universal stress protein family Spore_permease PF03845.13 gi|257386811|ref|YP_003176584.1| - 3.1e-07 29.5 7.5 3.1e-07 29.5 7.5 2.1 2 0 0 2 2 2 1 Spore germination protein Cloacin PF03515.14 gi|257386811|ref|YP_003176584.1| - 0.092 12.4 0.0 0.23 11.1 0.0 1.6 1 0 0 1 1 1 0 Colicin-like bacteriocin tRNase domain SnoaL_2 PF12680.7 gi|257386812|ref|YP_003176585.1| - 2.5e-14 53.8 1.4 3e-14 53.5 1.4 1.0 1 0 0 1 1 1 1 SnoaL-like domain SnoaL_4 PF13577.6 gi|257386812|ref|YP_003176585.1| - 2.9e-07 30.7 0.2 4.9e-07 29.9 0.1 1.3 1 1 0 1 1 1 1 SnoaL-like domain NTF2 PF02136.20 gi|257386812|ref|YP_003176585.1| - 2.1e-05 25.1 0.0 2.6e-05 24.8 0.0 1.1 1 0 0 1 1 1 1 Nuclear transport factor 2 (NTF2) domain DUF4440 PF14534.6 gi|257386812|ref|YP_003176585.1| - 5.2e-05 23.6 0.3 6.6e-05 23.3 0.3 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4440) SnoaL PF07366.12 gi|257386812|ref|YP_003176585.1| - 5.5e-05 23.0 0.2 0.00012 21.8 0.2 1.7 1 1 0 1 1 1 1 SnoaL-like polyketide cyclase SnoaL_3 PF13474.6 gi|257386812|ref|YP_003176585.1| - 0.00057 20.1 0.0 0.00058 20.1 0.0 1.2 1 0 0 1 1 1 1 SnoaL-like domain LEH PF07858.12 gi|257386812|ref|YP_003176585.1| - 0.0048 17.0 0.1 0.0055 16.8 0.1 1.1 1 0 0 1 1 1 1 Limonene-1,2-epoxide hydrolase catalytic domain AhpC-TSA PF00578.21 gi|257386813|ref|YP_003176586.1| - 2.3e-29 101.9 0.0 3.3e-29 101.3 0.0 1.3 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|257386813|ref|YP_003176586.1| - 1.7e-18 66.7 0.0 2.9e-18 66.0 0.0 1.3 1 0 0 1 1 1 1 Redoxin DUF899 PF05988.12 gi|257386813|ref|YP_003176586.1| - 0.018 14.6 0.2 0.039 13.5 0.1 1.6 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF899) DUF4849 PF16141.5 gi|257386813|ref|YP_003176586.1| - 0.14 11.4 0.1 0.24 10.6 0.1 1.3 1 0 0 1 1 1 0 Putative glycoside hydrolase Family 18, chitinase_18 Ribo_biogen_C PF04034.13 gi|257386814|ref|YP_003176587.1| - 7.2e-45 151.8 0.0 8.8e-45 151.5 0.0 1.1 1 0 0 1 1 1 1 Ribosome biogenesis protein, C-terminal RLI PF04068.15 gi|257386814|ref|YP_003176587.1| - 7.6e-05 22.5 0.0 0.00011 22.0 0.0 1.3 1 0 0 1 1 1 1 Possible Fer4-like domain in RNase L inhibitor, RLI DTW PF03942.15 gi|257386814|ref|YP_003176587.1| - 0.096 12.4 0.0 0.43 10.3 0.0 1.8 1 1 0 1 1 1 0 DTW domain Peptidase_M10 PF00413.24 gi|257386816|ref|YP_003176589.1| - 7.6e-06 25.9 0.0 1.6e-05 24.8 0.0 1.6 1 1 0 1 1 1 1 Matrixin Reprolysin_3 PF13582.6 gi|257386816|ref|YP_003176589.1| - 0.0054 17.2 0.0 0.02 15.4 0.0 2.0 2 0 0 2 2 2 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_5 PF13688.6 gi|257386816|ref|YP_003176589.1| - 0.066 13.4 0.1 0.15 12.2 0.1 1.5 1 0 0 1 1 1 0 Metallo-peptidase family M12 TALPID3 PF15324.6 gi|257386816|ref|YP_003176589.1| - 0.17 9.6 14.8 0.22 9.2 14.8 1.0 1 0 0 1 1 1 0 Hedgehog signalling target DUF4813 PF16072.5 gi|257386816|ref|YP_003176589.1| - 0.38 10.4 17.4 0.03 14.0 12.5 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4813) Shisa PF13908.6 gi|257386816|ref|YP_003176589.1| - 0.4 10.9 1.7 0.61 10.3 1.7 1.2 1 0 0 1 1 1 0 Wnt and FGF inhibitory regulator Med13_C PF06333.12 gi|257386816|ref|YP_003176589.1| - 0.72 9.1 6.8 1.1 8.5 6.8 1.2 1 0 0 1 1 1 0 Mediator complex subunit 13 C-terminal domain Mucin PF01456.17 gi|257386816|ref|YP_003176589.1| - 1.4 8.9 23.3 2.4 8.1 23.3 1.4 1 0 0 1 1 1 0 Mucin-like glycoprotein HisG PF01634.18 gi|257386817|ref|YP_003176590.1| - 4e-50 169.9 0.2 6.8e-50 169.1 0.2 1.3 1 0 0 1 1 1 1 ATP phosphoribosyltransferase HisG_C PF08029.11 gi|257386817|ref|YP_003176590.1| - 1.3e-25 89.4 0.1 2.3e-25 88.5 0.1 1.4 1 0 0 1 1 1 1 HisG, C-terminal domain NMT1 PF09084.11 gi|257386817|ref|YP_003176590.1| - 0.027 14.4 0.0 2.9 7.8 0.0 2.6 1 1 1 2 2 2 0 NMT1/THI5 like Snapin_Pallidin PF14712.6 gi|257386818|ref|YP_003176591.1| - 0.021 15.2 0.1 0.48 10.9 0.0 2.3 2 1 0 2 2 2 0 Snapin/Pallidin HHH_8 PF14716.6 gi|257386818|ref|YP_003176591.1| - 0.15 12.4 7.4 2.1 8.8 0.6 2.4 2 0 0 2 2 2 0 Helix-hairpin-helix domain DUF2721 PF11026.8 gi|257386818|ref|YP_003176591.1| - 0.28 11.1 3.8 5.3 6.9 0.2 2.5 2 1 1 3 3 3 0 Protein of unknown function (DUF2721) Amidohydro_1 PF01979.20 gi|257386819|ref|YP_003176592.1| - 1.2e-72 245.2 3.3 1.3e-72 245.0 3.3 1.0 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|257386819|ref|YP_003176592.1| - 3.5e-18 66.3 15.9 2.2e-14 53.8 10.9 2.1 1 1 1 2 2 2 2 Amidohydrolase family A_deaminase PF00962.22 gi|257386819|ref|YP_003176592.1| - 1.5e-07 31.1 0.0 2.8e-07 30.2 0.0 1.4 1 0 0 1 1 1 1 Adenosine/AMP deaminase TatD_DNase PF01026.21 gi|257386819|ref|YP_003176592.1| - 0.016 14.6 0.0 0.026 13.9 0.0 1.4 1 0 0 1 1 1 0 TatD related DNase bMG3 PF11974.8 gi|257386820|ref|YP_003176593.1| - 0.0065 16.5 2.0 2 8.5 0.1 2.7 2 1 0 2 2 2 2 Bacterial alpha-2-macroglobulin MG3 domain Cadherin-like PF12733.7 gi|257386820|ref|YP_003176593.1| - 0.11 13.1 6.2 0.21 12.1 6.2 1.5 1 0 0 1 1 1 0 Cadherin-like beta sandwich domain BACON PF13004.7 gi|257386820|ref|YP_003176593.1| - 0.18 11.8 5.8 3.2 7.8 0.2 2.7 2 0 0 2 2 2 0 Putative binding domain, N-terminal CarboxypepD_reg PF13620.6 gi|257386820|ref|YP_003176593.1| - 0.32 11.3 7.1 0.63 10.4 5.8 2.1 1 1 0 1 1 1 0 Carboxypeptidase regulatory-like domain AdoHcyase PF05221.17 gi|257386821|ref|YP_003176594.1| - 5.8e-52 176.7 0.0 5.2e-25 88.2 0.7 2.0 1 1 1 2 2 2 2 S-adenosyl-L-homocysteine hydrolase AdoHcyase_NAD PF00670.21 gi|257386821|ref|YP_003176594.1| - 1.4e-47 161.8 0.4 1.4e-47 161.8 0.4 1.7 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|257386821|ref|YP_003176594.1| - 1e-10 41.2 0.2 2e-10 40.3 0.2 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|257386821|ref|YP_003176594.1| - 1.2e-06 28.2 0.6 2.3e-06 27.3 0.2 1.6 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain Shikimate_DH PF01488.20 gi|257386821|ref|YP_003176594.1| - 0.0015 18.6 0.1 0.0028 17.7 0.1 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase TrkA_N PF02254.18 gi|257386821|ref|YP_003176594.1| - 0.0019 18.4 0.1 0.0048 17.1 0.1 1.7 1 0 0 1 1 1 1 TrkA-N domain F420_oxidored PF03807.17 gi|257386821|ref|YP_003176594.1| - 0.0062 17.1 0.2 0.014 15.9 0.2 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent ELFV_dehydrog PF00208.21 gi|257386821|ref|YP_003176594.1| - 0.015 15.0 0.6 0.024 14.4 0.2 1.6 2 0 0 2 2 2 0 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Urocanase PF01175.18 gi|257386821|ref|YP_003176594.1| - 0.081 12.6 0.4 0.15 11.7 0.4 1.4 1 0 0 1 1 1 0 Urocanase Rossmann-like domain Metallophos_2 PF12850.7 gi|257386822|ref|YP_003176595.1| - 8.5e-26 91.1 1.1 1.1e-25 90.8 1.1 1.1 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|257386822|ref|YP_003176595.1| - 5.7e-09 36.8 1.8 4.3e-08 33.9 1.7 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase DUF3220 PF11516.8 gi|257386822|ref|YP_003176595.1| - 0.027 14.7 0.0 0.054 13.7 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3120) Metallophos_3 PF14582.6 gi|257386822|ref|YP_003176595.1| - 0.084 12.2 0.1 0.24 10.7 0.0 1.7 2 0 0 2 2 2 0 Metallophosphoesterase, calcineurin superfamily AA_kinase PF00696.28 gi|257386823|ref|YP_003176596.1| - 1.3e-46 159.2 1.5 1.8e-46 158.7 1.5 1.2 1 0 0 1 1 1 1 Amino acid kinase family ACT_7 PF13840.6 gi|257386823|ref|YP_003176596.1| - 1.8e-19 69.3 0.0 5.2e-12 45.4 0.0 2.6 2 0 0 2 2 2 2 ACT domain ACT PF01842.25 gi|257386823|ref|YP_003176596.1| - 5.7e-11 42.0 0.6 4e-06 26.5 0.1 3.1 3 0 0 3 3 3 2 ACT domain ACT_4 PF13291.6 gi|257386823|ref|YP_003176596.1| - 0.0042 17.6 0.1 1.1 9.9 0.0 2.9 3 0 0 3 3 3 1 ACT domain DUF2007 PF09413.10 gi|257386823|ref|YP_003176596.1| - 0.0072 16.5 0.0 3.7 7.8 0.0 3.9 4 0 0 4 4 4 1 Putative prokaryotic signal transducing protein DUF21 PF01595.20 gi|257386825|ref|YP_003176598.1| - 5.1e-47 159.8 1.7 6.9e-47 159.4 1.7 1.1 1 0 0 1 1 1 1 Cyclin M transmembrane N-terminal domain CorC_HlyC PF03471.17 gi|257386825|ref|YP_003176598.1| - 3.9e-22 78.0 1.2 1.2e-21 76.5 0.1 2.4 2 1 0 2 2 2 1 Transporter associated domain CBS PF00571.28 gi|257386825|ref|YP_003176598.1| - 7.9e-15 55.0 3.7 7e-09 36.0 1.4 2.5 2 0 0 2 2 2 2 CBS domain Imm70 PF15601.6 gi|257386826|ref|YP_003176599.1| - 0.21 11.1 0.5 0.92 9.1 0.0 2.0 1 1 1 2 2 2 0 Immunity protein 70 PolC_DP2 PF03833.13 gi|257386828|ref|YP_003176601.1| - 0 1316.4 0.0 0 1314.6 0.0 1.7 2 0 0 2 2 2 1 DNA polymerase II large subunit DP2 Intein_splicing PF14890.6 gi|257386828|ref|YP_003176601.1| - 1.8e-08 34.4 0.0 4.7e-08 33.1 0.0 1.6 1 0 0 1 1 1 1 Intein splicing domain zinc-ribbons_6 PF07191.12 gi|257386828|ref|YP_003176601.1| - 0.051 13.6 11.3 2.4 8.2 7.8 2.7 2 1 0 2 2 2 0 zinc-ribbons HypA PF01155.19 gi|257386828|ref|YP_003176601.1| - 0.058 13.4 16.6 2.3 8.3 0.3 3.5 2 1 1 3 3 3 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Sigma70_ner PF04546.13 gi|257386828|ref|YP_003176601.1| - 0.24 11.2 5.2 0.58 10.0 5.2 1.6 1 0 0 1 1 1 0 Sigma-70, non-essential region DZR PF12773.7 gi|257386828|ref|YP_003176601.1| - 1.8 8.7 18.4 13 5.9 0.4 3.4 2 1 0 2 2 2 0 Double zinc ribbon PhnA_Zn_Ribbon PF08274.12 gi|257386828|ref|YP_003176601.1| - 2.7 8.0 5.3 6.3 6.8 3.9 2.5 2 1 0 2 2 2 0 PhnA Zinc-Ribbon DUF296 PF03479.15 gi|257386829|ref|YP_003176602.1| - 3.6e-19 69.1 0.0 4.4e-19 68.8 0.0 1.1 1 0 0 1 1 1 1 Plants and Prokaryotes Conserved (PCC) domain 2_5_RNA_ligase2 PF13563.6 gi|257386830|ref|YP_003176603.1| - 1.2e-15 57.8 0.1 1.4e-15 57.5 0.1 1.0 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.9 gi|257386830|ref|YP_003176603.1| - 0.0004 20.3 0.0 0.00047 20.1 0.0 1.1 1 0 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain AAA_25 PF13481.6 gi|257386830|ref|YP_003176603.1| - 0.0015 18.2 0.1 0.0019 17.8 0.1 1.2 1 0 0 1 1 1 1 AAA domain LigT_PEase PF02834.16 gi|257386830|ref|YP_003176603.1| - 0.0022 18.1 0.1 0.083 13.1 0.0 2.4 2 1 0 2 2 2 1 LigT like Phosphoesterase DUF4897 PF16238.5 gi|257386831|ref|YP_003176604.1| - 0.0035 17.2 0.0 0.0056 16.5 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4897) HTH_24 PF13412.6 gi|257386831|ref|YP_003176604.1| - 0.0099 15.4 0.2 0.018 14.6 0.2 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|257386831|ref|YP_003176604.1| - 0.038 13.9 0.1 0.078 12.9 0.1 1.5 1 0 0 1 1 1 0 MarR family Nnf1 PF03980.14 gi|257386832|ref|YP_003176605.1| - 0.66 10.4 5.7 1.6 9.2 5.7 1.6 1 0 0 1 1 1 0 Nnf1 DUF4897 PF16238.5 gi|257386833|ref|YP_003176606.1| - 0.00041 20.2 0.0 0.00062 19.6 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4897) Arginosuc_synth PF00764.19 gi|257386834|ref|YP_003176607.1| - 2e-145 484.9 0.1 2.4e-145 484.7 0.1 1.0 1 0 0 1 1 1 1 Arginosuccinate synthase QueC PF06508.13 gi|257386834|ref|YP_003176607.1| - 4.8e-06 26.2 0.0 9.2e-06 25.3 0.0 1.5 1 0 0 1 1 1 1 Queuosine biosynthesis protein QueC tRNA_Me_trans PF03054.16 gi|257386834|ref|YP_003176607.1| - 0.0016 17.3 0.1 0.0024 16.7 0.1 1.3 1 0 0 1 1 1 1 tRNA methyl transferase Asn_synthase PF00733.21 gi|257386834|ref|YP_003176607.1| - 0.0016 18.2 0.1 0.0029 17.4 0.1 1.3 1 0 0 1 1 1 1 Asparagine synthase NAD_synthase PF02540.17 gi|257386834|ref|YP_003176607.1| - 0.0026 16.9 0.0 0.004 16.3 0.0 1.2 1 0 0 1 1 1 1 NAD synthase Lyase_1 PF00206.20 gi|257386835|ref|YP_003176608.1| - 3e-56 191.1 0.2 5.7e-56 190.2 0.2 1.4 1 0 0 1 1 1 1 Lyase ASL_C2 PF14698.6 gi|257386835|ref|YP_003176608.1| - 2.2e-15 57.2 0.4 8.1e-15 55.3 0.4 2.1 1 0 0 1 1 1 1 Argininosuccinate lyase C-terminal DUF4262 PF14081.6 gi|257386835|ref|YP_003176608.1| - 0.024 14.8 0.3 0.29 11.4 0.0 2.5 2 1 0 2 2 2 0 Domain of unknown function (DUF4262) UCR_Fe-S_N PF10399.9 gi|257386835|ref|YP_003176608.1| - 4.5 6.7 8.0 0.9 8.9 0.2 2.9 2 0 0 2 2 2 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal DNA_RNApol_7kD PF03604.13 gi|257386836|ref|YP_003176609.1| - 0.0004 20.0 1.3 0.0061 16.2 1.5 2.1 1 1 1 2 2 2 2 DNA directed RNA polymerase, 7 kDa subunit PhnA_Zn_Ribbon PF08274.12 gi|257386836|ref|YP_003176609.1| - 0.0043 17.0 1.6 0.018 15.0 1.6 1.9 1 1 0 1 1 1 1 PhnA Zinc-Ribbon zinc_ribbon_2 PF13240.6 gi|257386836|ref|YP_003176609.1| - 0.01 15.5 0.2 0.081 12.7 0.2 2.0 1 1 0 1 1 1 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|257386836|ref|YP_003176609.1| - 0.013 15.0 1.4 0.021 14.3 1.4 1.3 1 0 0 1 1 1 0 TFIIB zinc-binding HypA PF01155.19 gi|257386836|ref|YP_003176609.1| - 0.014 15.4 0.2 0.015 15.3 0.2 1.0 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Lar_restr_allev PF14354.6 gi|257386836|ref|YP_003176609.1| - 0.016 15.6 0.7 0.024 15.0 0.7 1.4 1 1 0 1 1 1 0 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.10 gi|257386836|ref|YP_003176609.1| - 0.017 15.2 1.3 0.037 14.1 1.3 1.5 1 1 0 1 1 1 0 Zinc ribbon domain DZR PF12773.7 gi|257386836|ref|YP_003176609.1| - 0.02 14.9 0.6 0.25 11.4 1.0 1.8 1 1 0 1 1 1 0 Double zinc ribbon CpXC PF14353.6 gi|257386836|ref|YP_003176609.1| - 0.02 14.9 0.4 0.88 9.6 0.0 2.0 2 0 0 2 2 2 0 CpXC protein Desulfoferrod_N PF06397.12 gi|257386836|ref|YP_003176609.1| - 0.035 13.7 0.7 0.72 9.5 0.0 2.1 2 0 0 2 2 2 0 Desulfoferrodoxin, N-terminal domain zf_UBZ PF18439.1 gi|257386836|ref|YP_003176609.1| - 0.043 13.4 0.4 5.2 6.7 0.1 2.4 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-ribbon_3 PF13248.6 gi|257386836|ref|YP_003176609.1| - 0.051 13.0 1.5 2.3 7.7 1.6 2.3 1 1 0 1 1 1 0 zinc-ribbon domain YhfH PF14149.6 gi|257386836|ref|YP_003176609.1| - 0.056 13.4 0.9 6.2 6.9 0.1 2.2 2 0 0 2 2 2 0 YhfH-like protein RNA_POL_M_15KD PF02150.16 gi|257386836|ref|YP_003176609.1| - 0.071 13.0 2.1 0.79 9.6 2.0 2.1 1 1 0 1 1 1 0 RNA polymerases M/15 Kd subunit DUF1451 PF07295.11 gi|257386836|ref|YP_003176609.1| - 0.076 13.1 0.7 0.095 12.7 0.7 1.1 1 0 0 1 1 1 0 Zinc-ribbon containing domain ADD_ATRX PF17981.1 gi|257386836|ref|YP_003176609.1| - 0.13 12.2 0.6 0.68 9.8 0.0 1.9 1 1 1 2 2 2 0 Cysteine Rich ADD domain DUF678 PF05077.12 gi|257386836|ref|YP_003176609.1| - 0.23 11.6 1.0 0.29 11.3 0.1 1.6 1 1 1 2 2 2 0 Protein of unknown function (DUF678) RimK PF08443.11 gi|257386837|ref|YP_003176610.1| - 1.1e-18 67.5 0.0 4.3e-17 62.3 0.0 2.1 2 0 0 2 2 2 1 RimK-like ATP-grasp domain GSH-S_ATP PF02955.16 gi|257386837|ref|YP_003176610.1| - 6.6e-09 35.4 0.0 1.1e-08 34.6 0.0 1.3 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.14 gi|257386837|ref|YP_003176610.1| - 4.7e-08 33.2 0.0 7e-08 32.7 0.0 1.3 1 0 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|257386837|ref|YP_003176610.1| - 0.0002 21.0 0.0 0.00043 19.8 0.0 1.5 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp PF02222.22 gi|257386837|ref|YP_003176610.1| - 0.0003 20.4 0.0 0.005 16.4 0.0 2.3 2 0 0 2 2 2 1 ATP-grasp domain ATP-grasp_5 PF13549.6 gi|257386837|ref|YP_003176610.1| - 0.0064 16.0 0.0 0.02 14.4 0.0 1.9 2 1 0 2 2 2 1 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|257386837|ref|YP_003176610.1| - 0.12 11.6 0.0 0.49 9.6 0.0 2.0 3 0 0 3 3 3 0 Sugar-transfer associated ATP-grasp Semialdhyde_dh PF01118.24 gi|257386838|ref|YP_003176611.1| - 2.3e-26 92.6 0.0 4.6e-26 91.6 0.0 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 gi|257386838|ref|YP_003176611.1| - 1.4e-08 35.0 0.0 2.6e-08 34.1 0.0 1.5 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain AA_kinase PF00696.28 gi|257386839|ref|YP_003176612.1| - 1.9e-36 125.9 1.0 2.2e-36 125.7 1.0 1.0 1 0 0 1 1 1 1 Amino acid kinase family Aminotran_3 PF00202.21 gi|257386840|ref|YP_003176613.1| - 9.9e-108 360.4 0.0 1.3e-107 359.9 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Asparaginase_C PF17763.1 gi|257386840|ref|YP_003176613.1| - 0.03 14.5 0.0 0.12 12.7 0.0 2.0 2 0 0 2 2 2 0 Glutaminase/Asparaginase C-terminal domain Peptidase_M20 PF01546.28 gi|257386841|ref|YP_003176614.1| - 2e-24 86.4 0.6 2.9e-24 85.9 0.2 1.5 2 0 0 2 2 2 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|257386841|ref|YP_003176614.1| - 6.5e-05 22.8 0.0 0.00011 22.1 0.0 1.4 1 0 0 1 1 1 1 Peptidase dimerisation domain OTCace_N PF02729.21 gi|257386842|ref|YP_003176615.1| - 1.5e-50 171.1 0.0 2.5e-50 170.4 0.0 1.4 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.24 gi|257386842|ref|YP_003176615.1| - 4.2e-46 156.9 0.0 5.6e-46 156.5 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Fructosamin_kin PF03881.14 gi|257386844|ref|YP_003176617.1| - 9e-45 153.1 0.0 1e-44 152.9 0.0 1.0 1 0 0 1 1 1 1 Fructosamine kinase APH PF01636.23 gi|257386844|ref|YP_003176617.1| - 5.1e-20 72.4 5.3 6.5e-20 72.1 5.3 1.2 1 0 0 1 1 1 1 Phosphotransferase enzyme family APH_6_hur PF04655.14 gi|257386844|ref|YP_003176617.1| - 1.7e-05 24.3 0.1 4.1e-05 23.1 0.1 1.5 1 1 0 1 1 1 1 Aminoglycoside/hydroxyurea antibiotic resistance kinase EcKinase PF02958.20 gi|257386844|ref|YP_003176617.1| - 0.067 12.5 0.0 0.2 10.9 0.0 1.7 2 0 0 2 2 2 0 Ecdysteroid kinase DUF4012 PF13196.6 gi|257386844|ref|YP_003176617.1| - 0.17 12.3 0.0 0.27 11.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF4012) TrmB PF01978.19 gi|257386846|ref|YP_003176619.1| - 4.2e-14 52.2 0.0 5.2e-14 51.9 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|257386846|ref|YP_003176619.1| - 5.3e-06 26.2 0.2 7.8e-06 25.7 0.2 1.3 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|257386846|ref|YP_003176619.1| - 7e-05 22.7 0.2 0.00014 21.8 0.1 1.6 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_IclR PF09339.10 gi|257386846|ref|YP_003176619.1| - 0.00023 20.9 0.1 0.00037 20.2 0.1 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|257386846|ref|YP_003176619.1| - 0.0003 20.3 0.0 0.00051 19.6 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TFIIE_alpha PF02002.17 gi|257386846|ref|YP_003176619.1| - 0.00033 20.5 0.0 0.00039 20.3 0.0 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_5 PF01022.20 gi|257386846|ref|YP_003176619.1| - 0.00034 20.4 0.0 0.00052 19.8 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|257386846|ref|YP_003176619.1| - 0.00044 20.1 0.1 0.00064 19.6 0.1 1.2 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|257386846|ref|YP_003176619.1| - 0.00081 19.4 1.0 0.0023 18.0 0.4 2.0 3 0 0 3 3 3 1 Helix-turn-helix domain GntR PF00392.21 gi|257386846|ref|YP_003176619.1| - 0.001 18.7 0.6 0.0017 17.9 0.6 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_11 PF08279.12 gi|257386846|ref|YP_003176619.1| - 0.003 17.5 0.1 0.0047 16.8 0.1 1.3 1 0 0 1 1 1 1 HTH domain HTH_27 PF13463.6 gi|257386846|ref|YP_003176619.1| - 0.026 15.0 0.1 0.039 14.5 0.1 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_29 PF13551.6 gi|257386846|ref|YP_003176619.1| - 0.06 13.4 0.0 0.11 12.6 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix Phage_rep_org_N PF09681.10 gi|257386846|ref|YP_003176619.1| - 0.12 12.3 0.0 1.1 9.2 0.0 2.0 1 1 1 2 2 2 0 N-terminal phage replisome organiser (Phage_rep_org_N) Penicillinase_R PF03965.16 gi|257386846|ref|YP_003176619.1| - 0.15 12.5 0.0 0.19 12.1 0.0 1.2 1 0 0 1 1 1 0 Penicillinase repressor PALP PF00291.25 gi|257386847|ref|YP_003176620.1| - 3.1e-72 243.5 4.7 3.1e-72 243.5 4.7 1.7 2 0 0 2 2 2 1 Pyridoxal-phosphate dependent enzyme C1_2 PF03107.16 gi|257386847|ref|YP_003176620.1| - 0.093 13.1 0.1 0.17 12.2 0.1 1.4 1 0 0 1 1 1 0 C1 domain SHOCT PF09851.9 gi|257386847|ref|YP_003176620.1| - 0.26 11.1 0.7 15 5.5 0.2 2.5 2 0 0 2 2 2 0 Short C-terminal domain DUF4135 PF13575.6 gi|257386848|ref|YP_003176621.1| - 5e-102 342.0 0.0 6.6e-102 341.6 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4135) LANC_like PF05147.13 gi|257386848|ref|YP_003176621.1| - 4.2e-52 176.9 0.0 9e-52 175.8 0.0 1.5 2 0 0 2 2 2 1 Lanthionine synthetase C-like protein Beta-lactamase PF00144.24 gi|257386849|ref|YP_003176622.1| - 1.3e-47 162.7 1.9 2.5e-47 161.7 1.9 1.4 1 0 0 1 1 1 1 Beta-lactamase Yip1 PF04893.17 gi|257386849|ref|YP_003176622.1| - 0.0049 16.6 2.2 0.011 15.5 2.2 1.6 1 0 0 1 1 1 1 Yip1 domain TMEM65 PF10507.9 gi|257386849|ref|YP_003176622.1| - 0.047 13.6 0.0 0.17 11.8 0.0 1.9 1 0 0 1 1 1 0 Transmembrane protein 65 Phage_head_fibr PF11133.8 gi|257386849|ref|YP_003176622.1| - 0.069 12.6 0.0 0.11 11.8 0.0 1.2 1 0 0 1 1 1 0 Head fiber protein PadR PF03551.14 gi|257386851|ref|YP_003176624.1| - 1.8e-06 27.8 0.1 3.1e-06 27.1 0.1 1.5 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_5 PF01022.20 gi|257386851|ref|YP_003176624.1| - 6.3e-06 26.0 0.0 8.6e-06 25.5 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|257386851|ref|YP_003176624.1| - 1.2e-05 25.2 0.1 1.7e-05 24.8 0.1 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|257386851|ref|YP_003176624.1| - 5.5e-05 23.0 0.2 7.9e-05 22.5 0.2 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|257386851|ref|YP_003176624.1| - 0.0017 18.2 0.0 0.0048 16.8 0.0 1.8 1 1 1 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|257386851|ref|YP_003176624.1| - 0.002 18.1 0.1 0.0031 17.5 0.1 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_11 PF08279.12 gi|257386851|ref|YP_003176624.1| - 0.0029 17.5 0.2 0.0044 16.9 0.2 1.3 1 0 0 1 1 1 1 HTH domain HTH_27 PF13463.6 gi|257386851|ref|YP_003176624.1| - 0.0048 17.4 0.1 0.007 16.8 0.1 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain Crp PF00325.20 gi|257386851|ref|YP_003176624.1| - 0.0074 15.9 0.1 0.012 15.2 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, crp family ArsR PF09824.9 gi|257386851|ref|YP_003176624.1| - 0.0085 15.7 0.0 0.011 15.4 0.0 1.0 1 0 0 1 1 1 1 ArsR transcriptional regulator HTH_29 PF13551.6 gi|257386851|ref|YP_003176624.1| - 0.026 14.5 0.1 0.036 14.1 0.1 1.3 1 0 0 1 1 1 0 Winged helix-turn helix HTH_DeoR PF08220.12 gi|257386851|ref|YP_003176624.1| - 0.03 14.1 0.4 0.052 13.3 0.4 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain RP-C PF03428.13 gi|257386851|ref|YP_003176624.1| - 0.035 13.8 0.2 0.058 13.0 0.1 1.3 1 1 0 1 1 1 0 Replication protein C N-terminal domain FUR PF01475.19 gi|257386851|ref|YP_003176624.1| - 0.035 14.2 0.1 0.079 13.1 0.1 1.6 1 1 0 1 1 1 0 Ferric uptake regulator family MarR PF01047.22 gi|257386851|ref|YP_003176624.1| - 0.043 13.8 0.1 0.068 13.1 0.1 1.3 1 0 0 1 1 1 0 MarR family HTH_IclR PF09339.10 gi|257386851|ref|YP_003176624.1| - 0.054 13.3 0.2 0.079 12.8 0.2 1.2 1 0 0 1 1 1 0 IclR helix-turn-helix domain TFIIE_alpha PF02002.17 gi|257386851|ref|YP_003176624.1| - 0.061 13.2 0.0 0.091 12.6 0.0 1.3 1 1 0 1 1 1 0 TFIIE alpha subunit bacHORMA_1 PF18138.1 gi|257386851|ref|YP_003176624.1| - 0.081 12.8 0.1 0.096 12.6 0.1 1.2 1 0 0 1 1 1 0 Bacterial HORMA domain family 1 HTH_36 PF13730.6 gi|257386851|ref|YP_003176624.1| - 0.096 12.7 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain ABC_tran PF00005.27 gi|257386852|ref|YP_003176625.1| - 2.2e-32 112.4 0.0 3.5e-32 111.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|257386852|ref|YP_003176625.1| - 8.6e-12 45.5 0.6 1.4e-07 31.6 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|257386852|ref|YP_003176625.1| - 0.0014 18.3 0.1 0.0028 17.3 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|257386852|ref|YP_003176625.1| - 0.018 14.5 0.0 2 7.8 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 gi|257386852|ref|YP_003176625.1| - 0.022 14.5 0.4 0.052 13.3 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|257386852|ref|YP_003176625.1| - 0.023 15.2 0.1 0.039 14.5 0.1 1.3 1 0 0 1 1 1 0 AAA domain Lum_binding PF00677.17 gi|257386852|ref|YP_003176625.1| - 0.042 13.8 0.3 2.5 8.2 0.0 2.5 2 0 0 2 2 2 0 Lumazine binding domain IstB_IS21 PF01695.17 gi|257386852|ref|YP_003176625.1| - 0.043 13.6 0.0 8.6 6.1 0.0 2.3 2 0 0 2 2 2 0 IstB-like ATP binding protein MMR_HSR1 PF01926.23 gi|257386852|ref|YP_003176625.1| - 0.11 12.6 0.2 0.46 10.6 0.2 2.1 1 1 0 1 1 1 0 50S ribosome-binding GTPase ABC2_membrane_2 PF12679.7 gi|257386853|ref|YP_003176626.1| - 1.1e-22 80.7 9.9 1.1e-22 80.7 9.9 2.0 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|257386853|ref|YP_003176626.1| - 9e-05 22.5 3.5 9e-05 22.5 3.5 1.9 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|257386853|ref|YP_003176626.1| - 0.00019 21.1 4.2 0.00037 20.1 4.2 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|257386853|ref|YP_003176626.1| - 0.053 12.6 8.6 0.014 14.6 5.6 1.4 1 1 0 1 1 1 0 ABC-2 family transporter protein ABC_tran PF00005.27 gi|257386854|ref|YP_003176627.1| - 5.3e-28 98.2 0.0 1.3e-27 97.0 0.0 1.6 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|257386854|ref|YP_003176627.1| - 2.3e-08 34.2 1.6 0.00053 19.9 0.0 2.3 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|257386854|ref|YP_003176627.1| - 0.00041 21.0 0.1 0.0011 19.6 0.1 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) SMC_N PF02463.19 gi|257386854|ref|YP_003176627.1| - 0.0042 16.6 0.1 0.58 9.5 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|257386854|ref|YP_003176627.1| - 0.0049 17.2 1.3 0.094 13.0 1.3 2.3 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|257386854|ref|YP_003176627.1| - 0.011 16.3 0.2 0.023 15.2 0.2 1.6 1 1 0 1 1 1 0 AAA domain PIN_9 PF18477.1 gi|257386854|ref|YP_003176627.1| - 0.02 15.2 1.5 15 6.0 0.1 3.8 2 1 2 4 4 4 0 PIN like domain AAA PF00004.29 gi|257386854|ref|YP_003176627.1| - 0.042 14.3 0.1 0.11 12.9 0.1 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) SRP54 PF00448.22 gi|257386854|ref|YP_003176627.1| - 0.083 12.5 0.3 0.16 11.6 0.3 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_10 PF12846.7 gi|257386854|ref|YP_003176627.1| - 0.09 11.7 0.1 1.1 8.1 0.0 2.1 2 0 0 2 2 2 0 AAA-like domain AAA_29 PF13555.6 gi|257386854|ref|YP_003176627.1| - 0.099 12.4 0.2 0.26 11.0 0.2 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_24 PF13479.6 gi|257386854|ref|YP_003176627.1| - 0.1 12.3 0.0 0.23 11.1 0.0 1.7 2 0 0 2 2 2 0 AAA domain MukB PF04310.12 gi|257386854|ref|YP_003176627.1| - 0.14 12.0 0.2 0.25 11.1 0.2 1.4 1 0 0 1 1 1 0 MukB N-terminal NTPase_1 PF03266.15 gi|257386854|ref|YP_003176627.1| - 0.19 11.6 0.9 1.7 8.5 0.1 2.3 2 0 0 2 2 2 0 NTPase AAA_30 PF13604.6 gi|257386854|ref|YP_003176627.1| - 0.21 11.3 1.8 0.91 9.2 1.8 2.0 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|257386854|ref|YP_003176627.1| - 0.32 11.3 1.6 1.2 9.5 0.4 2.1 2 0 0 2 2 2 0 AAA domain ABC2_membrane_3 PF12698.7 gi|257386855|ref|YP_003176628.1| - 0.26 10.3 19.6 0.53 9.3 19.6 1.5 1 1 0 1 1 1 0 ABC-2 family transporter protein DUF5357 PF17310.2 gi|257386855|ref|YP_003176628.1| - 0.58 8.7 3.9 1 7.9 3.9 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5357) DUF3106 PF11304.8 gi|257386857|ref|YP_003176630.1| - 0.026 15.0 4.3 0.034 14.6 4.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3106) Jnk-SapK_ap_N PF09744.9 gi|257386857|ref|YP_003176630.1| - 0.056 13.7 5.6 0.062 13.5 5.6 1.1 1 0 0 1 1 1 0 JNK_SAPK-associated protein-1 Ribosomal_S17e PF00833.18 gi|257386857|ref|YP_003176630.1| - 0.14 12.1 0.8 0.16 11.9 0.8 1.1 1 0 0 1 1 1 0 Ribosomal S17 2-Hacid_dh_C PF02826.19 gi|257386858|ref|YP_003176631.1| - 2.4e-56 189.9 0.0 4.2e-56 189.1 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|257386858|ref|YP_003176631.1| - 2.6e-37 127.5 0.9 5.1e-37 126.5 0.9 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ACT PF01842.25 gi|257386858|ref|YP_003176631.1| - 0.00013 21.7 0.6 0.00065 19.4 0.0 2.4 2 0 0 2 2 2 1 ACT domain UDPG_MGDP_dh_C PF03720.15 gi|257386858|ref|YP_003176631.1| - 0.00026 21.4 0.1 0.0023 18.3 0.0 2.4 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_binding_2 PF03446.15 gi|257386858|ref|YP_003176631.1| - 0.00099 19.3 0.1 0.0079 16.4 0.0 2.4 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase IlvN PF07991.12 gi|257386858|ref|YP_003176631.1| - 0.0017 18.0 0.0 0.0054 16.3 0.0 1.9 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain TrkA_N PF02254.18 gi|257386858|ref|YP_003176631.1| - 0.013 15.7 0.4 0.15 12.3 0.0 2.9 3 0 0 3 3 3 0 TrkA-N domain F420_oxidored PF03807.17 gi|257386858|ref|YP_003176631.1| - 0.034 14.7 0.7 0.62 10.7 0.0 3.1 3 0 0 3 3 3 0 NADP oxidoreductase coenzyme F420-dependent NAD_binding_7 PF13241.6 gi|257386858|ref|YP_003176631.1| - 0.067 13.6 0.1 0.33 11.4 0.1 2.2 1 1 0 1 1 1 0 Putative NAD(P)-binding FliC_SP PF12613.8 gi|257386858|ref|YP_003176631.1| - 1.4 9.5 6.6 10 6.7 0.1 2.8 2 0 0 2 2 2 0 Flagellin structural protein CBS PF00571.28 gi|257386860|ref|YP_003176633.1| - 2.7e-34 117.4 15.2 3e-12 46.8 0.5 4.1 4 0 0 4 4 4 4 CBS domain HGTP_anticodon PF03129.20 gi|257386861|ref|YP_003176634.1| - 4e-19 68.6 0.0 9.1e-19 67.4 0.0 1.6 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|257386861|ref|YP_003176634.1| - 2.7e-09 37.2 0.0 1.2e-08 35.1 0.0 2.1 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) zf-ribbon_3 PF13248.6 gi|257386861|ref|YP_003176634.1| - 0.0074 15.7 0.3 1.8 8.1 0.0 2.4 2 0 0 2 2 2 2 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|257386861|ref|YP_003176634.1| - 0.075 13.2 0.4 9.8 6.4 0.0 2.5 2 0 0 2 2 2 0 Zinc ribbon domain Ribosomal_L32p PF01783.23 gi|257386861|ref|YP_003176634.1| - 0.19 12.0 0.2 3.4 8.0 0.0 2.7 3 0 0 3 3 3 0 Ribosomal L32p protein family Prok-RING_1 PF14446.6 gi|257386861|ref|YP_003176634.1| - 0.24 11.3 2.3 6.7 6.7 0.1 2.4 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 zinc_ribbon_2 PF13240.6 gi|257386861|ref|YP_003176634.1| - 0.57 10.0 2.1 28 4.6 0.3 2.4 2 0 0 2 2 2 0 zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|257386861|ref|YP_003176634.1| - 0.87 9.2 3.2 9.8 5.8 3.2 2.4 1 1 0 1 1 1 0 TFIIB zinc-binding Na_H_Exchanger PF00999.21 gi|257386863|ref|YP_003176636.1| - 7.9e-48 163.1 47.2 1.1e-47 162.7 47.2 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family Class_IIIsignal PF04021.12 gi|257386863|ref|YP_003176636.1| - 0.22 11.5 0.1 0.22 11.5 0.1 6.6 8 0 0 8 8 8 0 Class III signal peptide TrkA_C PF02080.21 gi|257386864|ref|YP_003176637.1| - 8.2e-16 57.6 0.7 2e-15 56.3 0.1 1.9 2 0 0 2 2 2 1 TrkA-C domain ERCC4 PF02732.15 gi|257386865|ref|YP_003176638.1| - 1.2e-23 84.1 0.0 2.8e-23 82.9 0.0 1.7 1 0 0 1 1 1 1 ERCC4 domain Helicase_C PF00271.31 gi|257386865|ref|YP_003176638.1| - 5.1e-22 78.3 0.0 1.3e-21 77.0 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|257386865|ref|YP_003176638.1| - 4.1e-16 59.3 0.0 9.8e-16 58.0 0.0 1.7 1 0 0 1 1 1 1 DEAD/DEAH box helicase HHH_5 PF14520.6 gi|257386865|ref|YP_003176638.1| - 2e-11 44.3 0.1 1.1e-10 41.9 0.0 2.3 2 0 0 2 2 2 1 Helix-hairpin-helix domain ResIII PF04851.15 gi|257386865|ref|YP_003176638.1| - 3.6e-11 43.4 0.0 9e-11 42.1 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit HHH_2 PF12826.7 gi|257386865|ref|YP_003176638.1| - 4.8e-11 42.6 0.1 1.6e-10 41.0 0.1 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix motif HHH PF00633.23 gi|257386865|ref|YP_003176638.1| - 2.5e-09 36.5 0.4 6.8e-06 25.7 0.0 3.4 3 0 0 3 3 3 2 Helix-hairpin-helix motif 5_3_exonuc PF01367.20 gi|257386865|ref|YP_003176638.1| - 0.01 16.4 0.1 0.12 13.0 0.0 2.7 2 1 0 2 2 2 0 5'-3' exonuclease, C-terminal SAM fold RuvB_N PF05496.12 gi|257386865|ref|YP_003176638.1| - 0.052 13.3 0.0 0.11 12.3 0.0 1.4 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain Helicase_C_2 PF13307.6 gi|257386865|ref|YP_003176638.1| - 0.085 13.0 0.1 0.085 13.0 0.1 2.1 3 0 0 3 3 3 0 Helicase C-terminal domain AhpC-TSA PF00578.21 gi|257386866|ref|YP_003176639.1| - 2.2e-10 40.5 0.0 3.2e-10 40.0 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|257386866|ref|YP_003176639.1| - 0.11 12.2 0.0 0.16 11.7 0.0 1.2 1 0 0 1 1 1 0 Redoxin Auto_anti-p27 PF06677.12 gi|257386867|ref|YP_003176640.1| - 3e-14 52.9 0.4 4.2e-14 52.4 0.4 1.2 1 0 0 1 1 1 1 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DZR PF12773.7 gi|257386867|ref|YP_003176640.1| - 0.00091 19.2 0.8 0.0016 18.4 0.8 1.3 1 0 0 1 1 1 1 Double zinc ribbon zinc-ribbons_6 PF07191.12 gi|257386867|ref|YP_003176640.1| - 0.0013 18.7 0.2 0.002 18.1 0.2 1.2 1 0 0 1 1 1 1 zinc-ribbons zf-C3HC4_3 PF13920.6 gi|257386867|ref|YP_003176640.1| - 0.03 14.2 0.3 0.049 13.5 0.3 1.3 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) GFA PF04828.14 gi|257386867|ref|YP_003176640.1| - 0.12 12.7 1.0 3.2 8.1 0.1 2.4 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme zf-ribbon_3 PF13248.6 gi|257386867|ref|YP_003176640.1| - 0.5 9.9 6.2 2.2 7.8 6.0 2.1 1 1 1 2 2 2 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|257386867|ref|YP_003176640.1| - 1.6 8.5 5.4 3.2 7.6 5.4 1.5 1 0 0 1 1 1 0 zinc-ribbon domain Ldh_1_N PF00056.23 gi|257386868|ref|YP_003176641.1| - 3.7e-38 130.8 0.4 5.3e-38 130.3 0.4 1.2 1 0 0 1 1 1 1 lactate/malate dehydrogenase, NAD binding domain Ldh_1_C PF02866.18 gi|257386868|ref|YP_003176641.1| - 2.9e-28 98.9 0.0 4.8e-28 98.2 0.0 1.4 1 0 0 1 1 1 1 lactate/malate dehydrogenase, alpha/beta C-terminal domain PSDC PF12588.8 gi|257386870|ref|YP_003176643.1| - 0.2 11.7 0.2 0.21 11.6 0.2 1.0 1 0 0 1 1 1 0 Phophatidylserine decarboxylase DUF3948 PF13134.6 gi|257386875|ref|YP_003176648.1| - 0.041 13.6 0.9 7.8 6.3 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3948) DUF2072 PF09845.9 gi|257386877|ref|YP_003176650.1| - 2.1e-34 118.6 0.1 5.8e-17 62.2 0.0 2.1 2 0 0 2 2 2 2 Zn-ribbon containing protein DUF1451 PF07295.11 gi|257386877|ref|YP_003176650.1| - 0.066 13.2 1.7 0.15 12.1 1.7 1.5 1 0 0 1 1 1 0 Zinc-ribbon containing domain zf-IS66 PF13005.7 gi|257386877|ref|YP_003176650.1| - 0.15 12.5 1.9 0.19 12.2 0.1 2.1 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 HypA PF01155.19 gi|257386877|ref|YP_003176650.1| - 0.2 11.7 0.4 0.33 11.0 0.4 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|257386877|ref|YP_003176650.1| - 0.21 11.8 4.7 0.21 11.7 3.0 2.0 2 0 0 2 2 2 0 Zinc ribbon domain zf-C2H2 PF00096.26 gi|257386877|ref|YP_003176650.1| - 7.5 7.2 6.0 2.3 8.8 0.7 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type DUF2073 PF09846.9 gi|257386878|ref|YP_003176651.1| - 1.1e-44 150.5 0.7 1.4e-44 150.3 0.7 1.1 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2073) MMR_HSR1 PF01926.23 gi|257386879|ref|YP_003176652.1| - 5.5e-15 55.4 0.0 7.3e-15 55.0 0.0 1.2 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP_EFTU PF00009.27 gi|257386879|ref|YP_003176652.1| - 5.5e-09 35.8 0.1 0.0034 16.9 0.0 3.4 2 2 0 2 2 2 2 Elongation factor Tu GTP binding domain Arf PF00025.21 gi|257386879|ref|YP_003176652.1| - 2.3e-07 30.5 0.0 0.00028 20.4 0.0 2.6 2 1 0 2 2 2 2 ADP-ribosylation factor family FeoB_N PF02421.18 gi|257386879|ref|YP_003176652.1| - 9.3e-05 22.0 0.4 0.0012 18.4 0.4 2.5 1 1 0 1 1 1 1 Ferrous iron transport protein B RsgA_GTPase PF03193.16 gi|257386879|ref|YP_003176652.1| - 0.00011 22.1 0.0 0.46 10.4 0.0 2.3 2 0 0 2 2 2 2 RsgA GTPase SRPRB PF09439.10 gi|257386879|ref|YP_003176652.1| - 0.00042 19.8 0.0 0.48 9.8 0.0 2.3 2 0 0 2 2 2 2 Signal recognition particle receptor beta subunit Septin PF00735.18 gi|257386879|ref|YP_003176652.1| - 0.00044 19.6 0.0 0.00062 19.1 0.0 1.4 1 1 0 1 1 1 1 Septin AAA_28 PF13521.6 gi|257386879|ref|YP_003176652.1| - 0.00063 20.0 0.2 0.12 12.6 0.0 2.3 1 1 1 2 2 2 1 AAA domain Dynamin_N PF00350.23 gi|257386879|ref|YP_003176652.1| - 0.0018 18.4 0.0 0.21 11.6 0.0 2.5 1 1 1 2 2 2 1 Dynamin family AAA_18 PF13238.6 gi|257386879|ref|YP_003176652.1| - 0.0018 18.8 0.0 0.0057 17.2 0.0 1.9 1 1 0 1 1 1 1 AAA domain MMR_HSR1_Xtn PF16897.5 gi|257386879|ref|YP_003176652.1| - 0.0024 17.9 0.0 0.0041 17.1 0.0 1.4 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain AAA_24 PF13479.6 gi|257386879|ref|YP_003176652.1| - 0.0025 17.6 0.0 0.0062 16.3 0.0 1.6 1 0 0 1 1 1 1 AAA domain NB-ARC PF00931.22 gi|257386879|ref|YP_003176652.1| - 0.0028 16.9 0.0 0.0046 16.2 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain Roc PF08477.13 gi|257386879|ref|YP_003176652.1| - 0.0064 16.7 0.0 0.11 12.7 0.0 2.1 2 0 0 2 2 2 1 Ras of Complex, Roc, domain of DAPkinase AAA PF00004.29 gi|257386879|ref|YP_003176652.1| - 0.0068 16.8 0.0 0.026 14.9 0.0 1.9 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) cobW PF02492.19 gi|257386879|ref|YP_003176652.1| - 0.0097 15.5 0.0 2.8 7.5 0.0 2.3 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain ATPase_2 PF01637.18 gi|257386879|ref|YP_003176652.1| - 0.012 15.6 0.0 0.019 14.9 0.0 1.7 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea RNA_helicase PF00910.22 gi|257386879|ref|YP_003176652.1| - 0.013 15.8 0.0 0.026 14.9 0.0 1.5 1 0 0 1 1 1 0 RNA helicase RuvB_N PF05496.12 gi|257386879|ref|YP_003176652.1| - 0.031 14.0 0.0 0.065 13.0 0.0 1.5 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|257386879|ref|YP_003176652.1| - 0.039 14.3 0.0 0.078 13.4 0.0 1.8 1 1 0 1 1 1 0 AAA ATPase domain ABC_tran PF00005.27 gi|257386879|ref|YP_003176652.1| - 0.041 14.4 0.0 0.053 14.0 0.0 1.4 1 1 0 1 1 1 0 ABC transporter MeaB PF03308.16 gi|257386879|ref|YP_003176652.1| - 0.046 12.7 0.0 2.2 7.2 0.0 2.6 2 1 0 2 2 2 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_25 PF13481.6 gi|257386879|ref|YP_003176652.1| - 0.088 12.4 0.1 0.22 11.1 0.1 1.8 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|257386879|ref|YP_003176652.1| - 0.092 12.7 0.0 0.15 11.9 0.0 1.4 1 0 0 1 1 1 0 NACHT domain Parvo_NS1 PF01057.17 gi|257386879|ref|YP_003176652.1| - 0.098 11.7 0.0 0.16 11.0 0.0 1.3 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 Zeta_toxin PF06414.12 gi|257386879|ref|YP_003176652.1| - 0.1 11.9 0.0 0.21 10.8 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin Cdc6_C PF09079.11 gi|257386880|ref|YP_003176653.1| - 4e-24 84.4 0.0 1.1e-23 83.0 0.0 1.8 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_16 PF13191.6 gi|257386880|ref|YP_003176653.1| - 2.6e-11 44.2 1.1 1.1e-10 42.2 0.0 2.4 3 0 0 3 3 3 1 AAA ATPase domain AAA_22 PF13401.6 gi|257386880|ref|YP_003176653.1| - 2.9e-09 37.3 0.5 2.4e-07 31.1 0.5 2.5 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|257386880|ref|YP_003176653.1| - 5.8e-09 36.5 0.1 0.00044 20.7 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) ATPase_2 PF01637.18 gi|257386880|ref|YP_003176653.1| - 0.00031 20.7 0.2 0.001 19.0 0.2 1.8 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_2 PF07724.14 gi|257386880|ref|YP_003176653.1| - 0.00047 20.3 0.0 0.0082 16.3 0.0 2.4 1 1 0 1 1 1 1 AAA domain (Cdc48 subfamily) DUF815 PF05673.13 gi|257386880|ref|YP_003176653.1| - 0.0026 17.0 0.0 0.0046 16.1 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF815) Sigma54_activat PF00158.26 gi|257386880|ref|YP_003176653.1| - 0.0035 17.1 0.0 0.0084 15.8 0.0 1.6 1 0 0 1 1 1 1 Sigma-54 interaction domain TniB PF05621.11 gi|257386880|ref|YP_003176653.1| - 0.004 16.6 0.2 0.032 13.6 0.0 2.3 2 0 0 2 2 2 1 Bacterial TniB protein RuvB_N PF05496.12 gi|257386880|ref|YP_003176653.1| - 0.0046 16.7 0.1 0.014 15.1 0.0 1.9 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain T2SSE PF00437.20 gi|257386880|ref|YP_003176653.1| - 0.0056 15.8 0.0 0.018 14.1 0.0 1.7 2 0 0 2 2 2 1 Type II/IV secretion system protein AAA_18 PF13238.6 gi|257386880|ref|YP_003176653.1| - 0.0066 17.0 0.0 0.018 15.6 0.0 1.8 1 0 0 1 1 1 1 AAA domain KAP_NTPase PF07693.14 gi|257386880|ref|YP_003176653.1| - 0.015 14.6 0.1 0.067 12.4 0.1 1.9 1 1 0 1 1 1 0 KAP family P-loop domain Rad17 PF03215.15 gi|257386880|ref|YP_003176653.1| - 0.019 14.9 0.0 0.25 11.2 0.0 2.2 2 0 0 2 2 2 0 Rad17 P-loop domain NB-ARC PF00931.22 gi|257386880|ref|YP_003176653.1| - 0.035 13.3 0.0 0.061 12.5 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain AAA_7 PF12775.7 gi|257386880|ref|YP_003176653.1| - 0.044 13.3 0.0 0.077 12.5 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region Microtub_bd PF16796.5 gi|257386880|ref|YP_003176653.1| - 0.051 13.5 0.1 0.1 12.5 0.1 1.5 1 0 0 1 1 1 0 Microtubule binding AAA_assoc_2 PF16193.5 gi|257386880|ref|YP_003176653.1| - 0.056 13.8 0.3 0.16 12.3 0.3 1.7 1 0 0 1 1 1 0 AAA C-terminal domain TsaE PF02367.17 gi|257386880|ref|YP_003176653.1| - 0.076 13.0 0.0 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_lid_10 PF17872.1 gi|257386880|ref|YP_003176653.1| - 0.089 12.9 0.0 0.42 10.8 0.0 2.0 2 0 0 2 2 2 0 AAA lid domain ResIII PF04851.15 gi|257386880|ref|YP_003176653.1| - 0.096 12.7 0.1 0.17 11.8 0.1 1.5 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit DNA_pol3_delta2 PF13177.6 gi|257386880|ref|YP_003176653.1| - 0.11 12.3 0.0 0.52 10.1 0.0 2.0 2 0 0 2 2 2 0 DNA polymerase III, delta subunit NACHT PF05729.12 gi|257386880|ref|YP_003176653.1| - 0.13 12.1 0.1 0.79 9.6 0.0 2.3 2 1 0 2 2 2 0 NACHT domain RNA_helicase PF00910.22 gi|257386880|ref|YP_003176653.1| - 0.17 12.3 0.0 0.46 10.9 0.0 1.8 1 0 0 1 1 1 0 RNA helicase DEAD PF00270.29 gi|257386880|ref|YP_003176653.1| - 0.22 11.3 3.2 6 6.6 2.1 2.7 2 1 0 2 2 2 0 DEAD/DEAH box helicase AAA_24 PF13479.6 gi|257386880|ref|YP_003176653.1| - 0.26 11.0 1.0 0.46 10.2 0.2 1.9 2 0 0 2 2 2 0 AAA domain MutS_III PF05192.18 gi|257386880|ref|YP_003176653.1| - 0.39 10.9 2.2 0.73 10.0 1.9 1.8 1 1 0 1 1 1 0 MutS domain III Peptidase_S24 PF00717.23 gi|257386881|ref|YP_003176654.1| - 1.8e-06 27.8 0.0 3.3e-06 27.0 0.0 1.5 1 0 0 1 1 1 1 Peptidase S24-like DNA_pol_E_B PF04042.16 gi|257386882|ref|YP_003176655.1| - 2.8e-12 46.5 0.0 4.3e-12 45.8 0.0 1.2 1 0 0 1 1 1 1 DNA polymerase alpha/epsilon subunit B Metallophos_2 PF12850.7 gi|257386882|ref|YP_003176655.1| - 9.9e-12 45.4 5.9 2.8e-11 43.9 5.9 1.8 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|257386882|ref|YP_003176655.1| - 2.7e-11 44.3 0.9 4.5e-11 43.6 0.9 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase tRNA_anti_2 PF13742.6 gi|257386882|ref|YP_003176655.1| - 0.056 13.6 0.0 0.12 12.6 0.0 1.5 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain DUF1249 PF06853.12 gi|257386882|ref|YP_003176655.1| - 0.14 12.2 0.1 0.28 11.2 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1249) Cys_Met_Meta_PP PF01053.20 gi|257386884|ref|YP_003176657.1| - 1.8e-138 461.3 0.0 2e-138 461.1 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.21 gi|257386884|ref|YP_003176657.1| - 4.5e-09 35.9 0.0 6.5e-09 35.4 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|257386884|ref|YP_003176657.1| - 9e-06 25.2 0.2 2.4e-05 23.8 0.1 1.6 2 0 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|257386884|ref|YP_003176657.1| - 1.1e-05 24.6 0.0 1.7e-05 23.9 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V TPP_enzyme_N PF02776.18 gi|257386884|ref|YP_003176657.1| - 0.047 13.3 2.0 6.4 6.3 0.3 2.9 3 0 0 3 3 3 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Beta_elim_lyase PF01212.21 gi|257386884|ref|YP_003176657.1| - 0.07 12.4 0.0 0.2 10.9 0.0 1.8 1 1 0 1 1 1 0 Beta-eliminating lyase SepSecS PF05889.13 gi|257386884|ref|YP_003176657.1| - 0.17 10.5 0.0 0.26 10.0 0.0 1.2 1 0 0 1 1 1 0 O-phosphoseryl-tRNA(Sec) selenium transferase, SepSecS SNARE_assoc PF09335.11 gi|257386885|ref|YP_003176658.1| - 2 8.9 11.8 0.3 11.6 5.4 2.2 2 1 0 2 2 2 0 SNARE associated Golgi protein HAD PF12710.7 gi|257386886|ref|YP_003176659.1| - 4.3e-22 79.4 0.8 5.2e-22 79.2 0.8 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|257386886|ref|YP_003176659.1| - 3.1e-13 50.5 8.9 3.4e-11 43.9 8.9 2.2 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|257386886|ref|YP_003176659.1| - 7.9e-11 42.2 0.1 2.5e-06 27.4 0.0 3.1 3 0 0 3 3 3 2 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|257386886|ref|YP_003176659.1| - 8e-06 26.0 0.5 0.00013 22.1 0.0 2.4 2 1 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Put_Phosphatase PF06888.12 gi|257386886|ref|YP_003176659.1| - 0.00081 18.9 0.0 0.0081 15.6 0.0 2.0 2 0 0 2 2 2 1 Putative Phosphatase Hydrolase_6 PF13344.6 gi|257386886|ref|YP_003176659.1| - 0.038 14.1 0.0 0.17 12.0 0.0 2.0 1 1 0 1 1 1 0 Haloacid dehalogenase-like hydrolase DUF4392 PF14336.6 gi|257386886|ref|YP_003176659.1| - 0.054 12.9 1.3 2.2 7.6 0.2 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4392) Glyco_trans_4_4 PF13579.6 gi|257386886|ref|YP_003176659.1| - 0.082 13.3 0.1 0.13 12.7 0.1 1.2 1 0 0 1 1 1 0 Glycosyl transferase 4-like domain Helicase_C_2 PF13307.6 gi|257386888|ref|YP_003176661.1| - 2.2e-29 102.8 0.0 5.3e-29 101.6 0.0 1.6 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.15 gi|257386888|ref|YP_003176661.1| - 9.4e-18 64.4 0.2 9.6e-17 61.2 0.2 2.1 1 1 0 1 1 1 1 DEAD_2 DEAD PF00270.29 gi|257386888|ref|YP_003176661.1| - 9.6e-08 32.0 0.2 3.4e-05 23.7 0.0 3.0 3 0 0 3 3 3 1 DEAD/DEAH box helicase ResIII PF04851.15 gi|257386888|ref|YP_003176661.1| - 3.1e-06 27.3 0.0 0.0004 20.4 0.0 2.3 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit HBB PF06777.11 gi|257386888|ref|YP_003176661.1| - 0.00096 18.9 0.0 0.0021 17.8 0.0 1.5 1 0 0 1 1 1 1 Helical and beta-bridge domain AAA_34 PF13872.6 gi|257386888|ref|YP_003176661.1| - 0.003 16.5 0.0 0.0066 15.4 0.0 1.5 1 0 0 1 1 1 1 P-loop containing NTP hydrolase pore-1 ATPase PF06745.13 gi|257386888|ref|YP_003176661.1| - 0.0083 15.5 0.0 0.016 14.6 0.0 1.4 1 0 0 1 1 1 1 KaiC Zot PF05707.12 gi|257386888|ref|YP_003176661.1| - 0.013 15.1 0.0 3.8 7.1 0.0 2.3 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) DUF2075 PF09848.9 gi|257386888|ref|YP_003176661.1| - 0.09 12.0 0.3 4.1 6.5 0.1 2.4 2 1 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) PhoH PF02562.16 gi|257386888|ref|YP_003176661.1| - 0.15 11.5 0.0 0.56 9.6 0.0 1.9 2 0 0 2 2 2 0 PhoH-like protein CENP-H PF05837.12 gi|257386888|ref|YP_003176661.1| - 0.54 10.7 5.6 0.11 12.9 1.5 1.9 2 0 0 2 2 2 0 Centromere protein H (CENP-H) Cation_efflux PF01545.21 gi|257386889|ref|YP_003176662.1| - 3.1e-32 111.9 4.3 4.2e-32 111.5 4.3 1.2 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|257386889|ref|YP_003176662.1| - 5.8e-07 29.6 0.0 9.8e-07 28.8 0.0 1.3 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter GT87 PF09594.10 gi|257386889|ref|YP_003176662.1| - 0.94 9.1 8.3 0.3 10.8 3.9 2.0 2 0 0 2 2 2 0 Glycosyltransferase family 87 Metallophos_2 PF12850.7 gi|257386890|ref|YP_003176663.1| - 3.4e-27 95.7 0.6 3.9e-27 95.5 0.6 1.0 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|257386890|ref|YP_003176663.1| - 2.6e-05 24.8 1.9 0.0062 17.1 0.1 2.1 1 1 1 2 2 2 2 Calcineurin-like phosphoesterase Metallophos_3 PF14582.6 gi|257386890|ref|YP_003176663.1| - 0.03 13.7 0.0 0.082 12.2 0.0 1.6 2 0 0 2 2 2 0 Metallophosphoesterase, calcineurin superfamily HTH_20 PF12840.7 gi|257386891|ref|YP_003176664.1| - 2.6e-13 49.8 1.0 5.3e-13 48.8 1.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|257386891|ref|YP_003176664.1| - 5.5e-06 26.2 0.1 1e-05 25.3 0.1 1.5 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|257386891|ref|YP_003176664.1| - 0.00037 20.0 0.0 0.00069 19.1 0.0 1.5 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding DprA_WH PF17782.1 gi|257386891|ref|YP_003176664.1| - 0.033 14.3 4.7 0.33 11.1 2.7 3.0 2 1 0 2 2 2 0 DprA winged helix domain HTH_5 PF01022.20 gi|257386891|ref|YP_003176664.1| - 0.088 12.7 0.0 0.14 12.0 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|257386891|ref|YP_003176664.1| - 0.11 12.3 0.0 0.19 11.6 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|257386891|ref|YP_003176664.1| - 0.19 11.7 0.0 0.32 11.0 0.0 1.3 1 0 0 1 1 1 0 MarR family DUF997 PF06196.12 gi|257386892|ref|YP_003176665.1| - 0.018 15.0 0.5 0.019 14.9 0.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF997) DUF4381 PF14316.6 gi|257386892|ref|YP_003176665.1| - 0.06 13.6 0.1 0.06 13.6 0.1 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4381) PsbH PF00737.20 gi|257386892|ref|YP_003176665.1| - 0.067 12.9 1.0 0.076 12.8 1.0 1.1 1 0 0 1 1 1 0 Photosystem II 10 kDa phosphoprotein Peptidase_M29 PF02073.15 gi|257386893|ref|YP_003176666.1| - 4.4e-68 229.9 0.1 5.5e-68 229.6 0.1 1.1 1 0 0 1 1 1 1 Thermophilic metalloprotease (M29) TrkA_C PF02080.21 gi|257386893|ref|YP_003176666.1| - 0.074 12.9 0.8 0.13 12.1 0.1 1.8 2 0 0 2 2 2 0 TrkA-C domain DUF951 PF06107.11 gi|257386895|ref|YP_003176668.1| - 0.016 15.1 0.1 0.026 14.4 0.0 1.5 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF951) AAA PF00004.29 gi|257386896|ref|YP_003176669.1| - 0.012 16.0 0.0 0.059 13.8 0.0 1.9 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) PALP PF00291.25 gi|257386899|ref|YP_003176672.1| - 3.6e-85 285.9 5.5 4.4e-85 285.7 5.5 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACT_4 PF13291.6 gi|257386899|ref|YP_003176672.1| - 4.5e-05 24.0 0.0 0.0002 21.9 0.0 2.0 2 0 0 2 2 2 1 ACT domain ACT PF01842.25 gi|257386899|ref|YP_003176672.1| - 0.00048 19.8 1.4 0.00084 19.1 0.1 2.2 2 0 0 2 2 2 1 ACT domain CagE_TrbE_VirB PF03135.14 gi|257386899|ref|YP_003176672.1| - 0.11 12.6 0.0 0.19 11.8 0.0 1.3 1 0 0 1 1 1 0 CagE, TrbE, VirB family, component of type IV transporter system Pep_deformylase PF01327.21 gi|257386899|ref|YP_003176672.1| - 0.28 10.8 0.8 4.8 6.8 0.1 2.4 2 1 1 3 3 3 0 Polypeptide deformylase Ribonuc_L-PSP PF01042.21 gi|257386900|ref|YP_003176673.1| - 6.8e-38 129.4 0.1 7.5e-38 129.3 0.1 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP B3R PF17057.5 gi|257386900|ref|YP_003176673.1| - 0.053 13.7 0.0 0.066 13.4 0.0 1.1 1 0 0 1 1 1 0 Poxviridae B3 protein DUF5493 PF17597.2 gi|257386901|ref|YP_003176674.1| - 0.0073 16.5 1.3 0.01 16.1 1.3 1.3 1 1 0 1 1 1 1 Family of unknown function (DUF5493) Citrate_synt PF00285.21 gi|257386902|ref|YP_003176675.1| - 5.2e-126 420.5 0.1 6e-126 420.3 0.1 1.0 1 0 0 1 1 1 1 Citrate synthase, C-terminal domain CRISPR_Cse2 PF09485.10 gi|257386902|ref|YP_003176675.1| - 0.0014 19.2 0.1 0.12 12.9 0.0 2.5 2 1 1 3 3 3 1 CRISPR-associated protein Cse2 (CRISPR_cse2) TrkA_C PF02080.21 gi|257386903|ref|YP_003176676.1| - 9.4e-29 99.1 0.6 1.8e-15 56.5 0.1 2.6 2 0 0 2 2 2 2 TrkA-C domain PhoU PF01895.19 gi|257386903|ref|YP_003176676.1| - 9.4e-20 70.9 7.4 3.4e-09 37.0 0.2 2.5 2 0 0 2 2 2 2 PhoU domain PhoU_div PF01865.16 gi|257386903|ref|YP_003176676.1| - 0.0064 15.8 1.2 1 8.7 0.1 2.3 2 0 0 2 2 2 2 Protein of unknown function DUF47 CLZ PF16526.5 gi|257386903|ref|YP_003176676.1| - 0.17 12.3 2.8 3.2 8.2 0.1 2.5 2 1 0 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Castor_Poll_mid PF06241.12 gi|257386903|ref|YP_003176676.1| - 0.2 11.7 0.0 2.6 8.0 0.0 2.4 3 0 0 3 3 3 0 Castor and Pollux, part of voltage-gated ion channel KfrA_N PF11740.8 gi|257386903|ref|YP_003176676.1| - 3.2 8.5 10.0 0.84 10.3 0.2 3.4 2 1 1 3 3 3 0 Plasmid replication region DNA-binding N-term DUF3487 PF11990.8 gi|257386904|ref|YP_003176677.1| - 0.33 10.8 2.8 0.41 10.6 2.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3487) AstE_AspA PF04952.14 gi|257386905|ref|YP_003176678.1| - 1.5e-56 191.6 0.0 1.8e-56 191.4 0.0 1.0 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family PYNP_C PF07831.13 gi|257386905|ref|YP_003176678.1| - 0.084 12.5 0.0 0.17 11.6 0.0 1.5 1 0 0 1 1 1 0 Pyrimidine nucleoside phosphorylase C-terminal domain PALP PF00291.25 gi|257386906|ref|YP_003176679.1| - 3.1e-61 207.4 7.4 3.5e-61 207.2 7.4 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ADH_zinc_N PF00107.26 gi|257386906|ref|YP_003176679.1| - 0.074 13.0 0.7 0.16 12.0 0.1 1.9 2 0 0 2 2 2 0 Zinc-binding dehydrogenase zf-RING_5 PF14634.6 gi|257386906|ref|YP_003176679.1| - 0.11 12.5 0.8 0.17 11.8 0.8 1.3 1 0 0 1 1 1 0 zinc-RING finger domain Glyco_hydro_9 PF00759.19 gi|257386908|ref|YP_003176681.1| - 2.8e-25 89.6 0.7 3.9e-25 89.1 0.7 1.1 1 0 0 1 1 1 1 Glycosyl hydrolase family 9 CelD_N PF02927.14 gi|257386908|ref|YP_003176681.1| - 1.2e-14 55.0 0.0 3.1e-14 53.6 0.0 1.8 1 0 0 1 1 1 1 Cellulase N-terminal ig-like domain Glyco_hydro_88 PF07470.13 gi|257386908|ref|YP_003176681.1| - 0.023 13.8 0.3 0.058 12.5 0.2 1.7 1 1 1 2 2 2 0 Glycosyl Hydrolase Family 88 APG6_N PF17675.1 gi|257386909|ref|YP_003176682.1| - 0.0043 17.6 1.1 0.2 12.2 1.1 2.3 1 1 0 1 1 1 1 Apg6 coiled-coil region HIP1_clath_bdg PF16515.5 gi|257386909|ref|YP_003176682.1| - 0.067 13.8 0.1 17 6.1 0.0 2.5 2 0 0 2 2 2 0 Clathrin-binding domain of Huntingtin-interacting protein 1 DUF1743 PF08489.11 gi|257386910|ref|YP_003176683.1| - 6e-41 139.1 0.0 9.2e-41 138.5 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF1743) tRNA_anti-codon PF01336.25 gi|257386910|ref|YP_003176683.1| - 2.2e-06 27.6 0.0 6.9e-06 26.0 0.0 1.8 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain tRNA_anti_2 PF13742.6 gi|257386910|ref|YP_003176683.1| - 0.0006 20.0 0.0 0.0011 19.1 0.0 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain Zn_Tnp_IS1595 PF12760.7 gi|257386910|ref|YP_003176683.1| - 0.036 14.0 0.3 0.081 12.9 0.3 1.6 1 0 0 1 1 1 0 Transposase zinc-ribbon domain C1_2 PF03107.16 gi|257386910|ref|YP_003176683.1| - 0.048 14.0 0.1 0.087 13.2 0.1 1.4 1 0 0 1 1 1 0 C1 domain C1_1 PF00130.22 gi|257386910|ref|YP_003176683.1| - 0.079 12.9 0.2 0.15 12.0 0.2 1.4 1 0 0 1 1 1 0 Phorbol esters/diacylglycerol binding domain (C1 domain) OrfB_Zn_ribbon PF07282.11 gi|257386910|ref|YP_003176683.1| - 0.14 12.1 0.5 0.28 11.2 0.5 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Zn-ribbon_8 PF09723.10 gi|257386910|ref|YP_003176683.1| - 0.17 12.1 1.5 11 6.2 0.1 2.9 2 0 0 2 2 2 0 Zinc ribbon domain zinc-ribbons_6 PF07191.12 gi|257386910|ref|YP_003176683.1| - 0.21 11.6 0.6 0.4 10.7 0.6 1.4 1 0 0 1 1 1 0 zinc-ribbons HTH_3 PF01381.22 gi|257386911|ref|YP_003176684.1| - 9.9e-09 35.1 0.0 1.6e-08 34.5 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|257386911|ref|YP_003176684.1| - 7.5e-06 26.2 0.2 1.9e-05 24.9 0.2 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_19 PF12844.7 gi|257386911|ref|YP_003176684.1| - 8.6e-05 22.5 0.0 0.00021 21.3 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|257386911|ref|YP_003176684.1| - 0.00024 21.0 0.0 0.00053 19.9 0.0 1.5 1 0 0 1 1 1 1 HTH domain HTH_23 PF13384.6 gi|257386911|ref|YP_003176684.1| - 0.001 18.8 0.2 0.0027 17.4 0.0 1.8 2 0 0 2 2 2 1 Homeodomain-like domain HTH_25 PF13413.6 gi|257386911|ref|YP_003176684.1| - 0.0054 16.6 0.0 0.011 15.6 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|257386911|ref|YP_003176684.1| - 0.0066 15.9 0.0 0.013 15.0 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_8 PF02954.19 gi|257386911|ref|YP_003176684.1| - 0.0079 16.0 0.6 0.015 15.1 0.0 1.7 2 0 0 2 2 2 1 Bacterial regulatory protein, Fis family HTH_10 PF04967.12 gi|257386911|ref|YP_003176684.1| - 0.041 13.7 0.0 0.072 12.9 0.0 1.4 1 0 0 1 1 1 0 HTH DNA binding domain HTH_38 PF13936.6 gi|257386911|ref|YP_003176684.1| - 0.094 12.5 0.0 0.2 11.5 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain NUMOD1 PF07453.13 gi|257386911|ref|YP_003176684.1| - 0.13 12.6 0.0 0.24 11.7 0.0 1.4 1 0 0 1 1 1 0 NUMOD1 domain HTH_32 PF13565.6 gi|257386911|ref|YP_003176684.1| - 0.14 12.8 0.0 0.37 11.4 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain HTH_AraC PF00165.23 gi|257386911|ref|YP_003176684.1| - 0.15 12.2 0.0 0.33 11.1 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix proteins, AraC family HTH_36 PF13730.6 gi|257386911|ref|YP_003176684.1| - 0.23 11.4 0.0 0.42 10.6 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain GST_N_3 PF13417.6 gi|257386912|ref|YP_003176685.1| - 2.4e-14 53.5 0.0 2.9e-14 53.2 0.0 1.0 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Glutaredoxin PF00462.24 gi|257386912|ref|YP_003176685.1| - 3.2e-11 43.3 0.0 4.4e-11 42.8 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin GST_N_2 PF13409.6 gi|257386912|ref|YP_003176685.1| - 1.4e-09 38.1 0.0 1.6e-09 37.9 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Rop PF01815.16 gi|257386912|ref|YP_003176685.1| - 0.0071 16.2 0.1 0.012 15.5 0.1 1.3 1 0 0 1 1 1 1 Rop protein DUF836 PF05768.14 gi|257386912|ref|YP_003176685.1| - 0.025 15.0 0.2 0.027 14.9 0.2 1.3 1 1 0 1 1 1 0 Glutaredoxin-like domain (DUF836) Thioredoxin_2 PF13098.6 gi|257386912|ref|YP_003176685.1| - 0.14 12.7 0.1 0.25 11.8 0.1 1.5 1 1 0 1 1 1 0 Thioredoxin-like domain UBZ_FAAP20 PF15750.5 gi|257386912|ref|YP_003176685.1| - 0.14 12.2 0.1 0.25 11.3 0.1 1.5 1 0 0 1 1 1 0 Ubiquitin-binding zinc-finger Xan_ur_permease PF00860.20 gi|257386913|ref|YP_003176686.1| - 6.6e-36 123.8 42.3 9.6e-36 123.3 42.3 1.2 1 0 0 1 1 1 1 Permease family Pribosyltran PF00156.27 gi|257386914|ref|YP_003176687.1| - 8.9e-13 48.0 0.2 1.2e-12 47.6 0.2 1.1 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|257386914|ref|YP_003176687.1| - 9.8e-05 21.9 0.1 0.00013 21.4 0.1 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyl_synth PF14572.6 gi|257386914|ref|YP_003176687.1| - 0.044 13.8 0.1 0.059 13.4 0.1 1.3 1 0 0 1 1 1 0 Phosphoribosyl synthetase-associated domain PRTase_2 PF15609.6 gi|257386914|ref|YP_003176687.1| - 0.067 12.7 0.2 0.067 12.7 0.2 1.5 2 0 0 2 2 2 0 Phosphoribosyl transferase DUF5023 PF16426.5 gi|257386914|ref|YP_003176687.1| - 0.1 12.3 0.1 0.18 11.4 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF5023) Pribosyltran PF00156.27 gi|257386915|ref|YP_003176688.1| - 3.2e-18 65.8 0.0 4.6e-18 65.2 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|257386915|ref|YP_003176688.1| - 0.0061 16.0 0.0 0.0087 15.5 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase PAS_3 PF08447.12 gi|257386916|ref|YP_003176689.1| - 1e-27 96.2 0.3 5.1e-14 52.3 0.2 2.5 2 0 0 2 2 2 2 PAS fold PAS_4 PF08448.10 gi|257386916|ref|YP_003176689.1| - 2.9e-23 82.2 1.1 4.1e-14 52.8 0.2 2.5 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.7 gi|257386916|ref|YP_003176689.1| - 3.1e-15 56.3 0.0 3e-10 40.3 0.0 2.8 2 0 0 2 2 2 2 PAS domain PAS PF00989.25 gi|257386916|ref|YP_003176689.1| - 4.8e-15 55.6 0.0 9.4e-13 48.2 0.0 2.5 2 0 0 2 2 2 1 PAS fold HATPase_c_2 PF13581.6 gi|257386916|ref|YP_003176689.1| - 3.6e-10 39.9 0.0 8.5e-10 38.7 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c PF02518.26 gi|257386916|ref|YP_003176689.1| - 4e-10 40.2 0.0 1.1e-09 38.8 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 gi|257386916|ref|YP_003176689.1| - 4.5e-08 32.9 0.6 0.00058 19.8 0.0 3.3 3 0 0 3 3 3 2 PAS domain PAS_11 PF14598.6 gi|257386916|ref|YP_003176689.1| - 5.1e-05 23.4 0.0 0.00033 20.7 0.0 2.2 2 0 0 2 2 2 1 PAS domain HisKA_4TM PF16926.5 gi|257386916|ref|YP_003176689.1| - 0.00017 21.2 0.6 0.00031 20.3 0.6 1.4 1 0 0 1 1 1 1 Archaeal 4TM region of histidine kinase PAS_10 PF13596.6 gi|257386916|ref|YP_003176689.1| - 0.0032 18.0 0.1 3.3 8.4 0.0 2.5 2 0 0 2 2 2 2 PAS domain DUF2520 PF10728.9 gi|257386916|ref|YP_003176689.1| - 0.0039 16.9 1.1 0.0083 15.9 1.0 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF2520) PAS_7 PF12860.7 gi|257386916|ref|YP_003176689.1| - 0.013 15.6 1.2 0.13 12.4 0.0 3.0 3 1 0 3 3 3 0 PAS fold HisKA PF00512.25 gi|257386916|ref|YP_003176689.1| - 0.022 14.8 0.2 0.066 13.3 0.2 1.8 1 0 0 1 1 1 0 His Kinase A (phospho-acceptor) domain HATPase_c_3 PF13589.6 gi|257386916|ref|YP_003176689.1| - 0.17 11.7 0.0 0.35 10.7 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ROS_MUCR PF05443.11 gi|257386916|ref|YP_003176689.1| - 0.3 11.1 1.2 0.87 9.6 0.3 2.0 1 1 0 2 2 2 0 ROS/MUCR transcriptional regulator protein PGM_PMM_I PF02878.16 gi|257386917|ref|YP_003176690.1| - 4e-35 120.5 0.0 7.2e-35 119.7 0.0 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|257386917|ref|YP_003176690.1| - 9.8e-31 106.4 0.2 2.5e-30 105.1 0.2 1.8 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.20 gi|257386917|ref|YP_003176690.1| - 9e-15 54.6 0.2 2.8e-14 53.1 0.2 1.9 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain PGM_PMM_III PF02880.16 gi|257386917|ref|YP_003176690.1| - 1.4e-14 54.3 0.1 2.8e-14 53.3 0.1 1.5 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CinA_KH PF18146.1 gi|257386917|ref|YP_003176690.1| - 0.15 12.2 2.1 16 5.7 1.0 2.7 2 0 0 2 2 2 0 Damage-inducible protein CinA KH domain DUF2959 PF11172.8 gi|257386918|ref|YP_003176691.1| - 0.052 13.7 0.2 0.14 12.3 0.2 1.8 1 0 0 1 1 1 0 Protein of unknown function (DUF2959) DUF1525 PF07511.11 gi|257386918|ref|YP_003176691.1| - 0.076 13.2 0.2 0.32 11.2 0.2 2.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1525) Spectrin PF00435.21 gi|257386918|ref|YP_003176691.1| - 0.31 11.6 7.8 0.87 10.1 0.9 3.3 3 1 0 3 3 3 0 Spectrin repeat PRA-CH PF01502.18 gi|257386919|ref|YP_003176692.1| - 9e-34 115.2 0.2 1.2e-33 114.7 0.2 1.2 1 0 0 1 1 1 1 Phosphoribosyl-AMP cyclohydrolase Arc_PepC_II PF06847.11 gi|257386920|ref|YP_003176693.1| - 3.9e-09 36.9 0.3 4.4e-07 30.3 0.7 2.4 2 0 0 2 2 2 1 Archaeal Peptidase A24 C-terminus Type II Peptidase_A24 PF01478.18 gi|257386920|ref|YP_003176693.1| - 6.3e-08 33.0 6.2 1.2e-07 32.1 6.2 1.5 1 0 0 1 1 1 1 Type IV leader peptidase family Imm49 PF15575.6 gi|257386920|ref|YP_003176693.1| - 0.18 11.5 0.5 0.33 10.7 0.5 1.4 1 0 0 1 1 1 0 Immunity protein 49 Fer2 PF00111.27 gi|257386921|ref|YP_003176694.1| - 2.5e-15 56.2 0.4 4e-15 55.5 0.4 1.2 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.6 gi|257386921|ref|YP_003176694.1| - 0.031 14.3 0.2 0.055 13.5 0.2 1.5 1 1 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain PHO4 PF01384.20 gi|257386922|ref|YP_003176695.1| - 7.5e-42 143.6 32.7 7.5e-42 143.6 32.7 1.7 2 1 0 2 2 2 1 Phosphate transporter family CPP1-like PF11833.8 gi|257386922|ref|YP_003176695.1| - 6.8 6.3 12.2 1.2 8.7 6.1 2.5 2 0 0 2 2 2 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like DUF948 PF06103.11 gi|257386923|ref|YP_003176696.1| - 2.2e-07 31.0 7.4 2.2e-07 31.0 7.4 2.6 3 0 0 3 3 2 2 Bacterial protein of unknown function (DUF948) HemX PF04375.14 gi|257386923|ref|YP_003176696.1| - 8.4e-05 22.0 1.7 8.4e-05 22.0 1.7 1.8 1 1 1 2 2 2 1 HemX, putative uroporphyrinogen-III C-methyltransferase Alanine_zipper PF11839.8 gi|257386923|ref|YP_003176696.1| - 0.00014 22.1 42.3 0.0026 18.1 20.6 2.7 1 1 2 3 3 3 2 Alanine-zipper, major outer membrane lipoprotein Spc7 PF08317.11 gi|257386923|ref|YP_003176696.1| - 0.00015 20.7 12.7 0.00022 20.2 12.7 1.1 1 0 0 1 1 1 1 Spc7 kinetochore protein Syntaxin-6_N PF09177.11 gi|257386923|ref|YP_003176696.1| - 0.0003 21.3 9.5 0.0008 19.9 1.5 2.2 2 0 0 2 2 2 1 Syntaxin 6, N-terminal BLOC1_2 PF10046.9 gi|257386923|ref|YP_003176696.1| - 0.0032 17.7 6.0 0.016 15.5 1.2 2.3 2 0 0 2 2 2 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 LMBR1 PF04791.16 gi|257386923|ref|YP_003176696.1| - 0.0034 16.4 0.0 0.004 16.1 0.0 1.1 1 0 0 1 1 1 1 LMBR1-like membrane protein MCPsignal PF00015.21 gi|257386923|ref|YP_003176696.1| - 0.0037 17.1 18.2 0.0043 16.9 7.6 2.2 1 1 1 2 2 2 1 Methyl-accepting chemotaxis protein (MCP) signalling domain Laminin_II PF06009.12 gi|257386923|ref|YP_003176696.1| - 0.0068 16.4 4.9 0.0068 16.4 4.9 2.2 1 1 1 2 2 2 2 Laminin Domain II T3SSipB PF16535.5 gi|257386923|ref|YP_003176696.1| - 0.012 16.1 22.4 0.34 11.4 22.3 2.2 1 1 0 1 1 1 0 Type III cell invasion protein SipB CLN3 PF02487.17 gi|257386923|ref|YP_003176696.1| - 0.013 14.5 4.4 0.04 13.0 4.4 1.7 1 1 0 1 1 1 0 CLN3 protein Sec8_exocyst PF04048.14 gi|257386923|ref|YP_003176696.1| - 0.018 14.9 0.4 4.3 7.2 0.1 2.2 1 1 1 2 2 2 0 Sec8 exocyst complex component specific domain ERM PF00769.19 gi|257386923|ref|YP_003176696.1| - 0.027 14.3 21.2 0.033 14.0 21.2 1.1 1 0 0 1 1 1 0 Ezrin/radixin/moesin family ISG65-75 PF11727.8 gi|257386923|ref|YP_003176696.1| - 0.05 12.8 19.2 0.06 12.6 18.3 1.5 1 1 0 1 1 1 0 Invariant surface glycoprotein DUF1664 PF07889.12 gi|257386923|ref|YP_003176696.1| - 0.075 13.1 11.1 0.12 12.4 3.2 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1664) Exonuc_VII_S PF02609.16 gi|257386923|ref|YP_003176696.1| - 0.097 12.7 9.4 0.87 9.7 0.5 3.0 2 1 1 3 3 3 0 Exonuclease VII small subunit CorA PF01544.18 gi|257386923|ref|YP_003176696.1| - 0.13 11.6 2.9 0.18 11.1 2.9 1.3 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein ApoLp-III PF07464.11 gi|257386923|ref|YP_003176696.1| - 0.15 12.2 17.4 1.8 8.7 16.3 2.4 1 1 1 2 2 2 0 Apolipophorin-III precursor (apoLp-III) UPF0242 PF06785.11 gi|257386923|ref|YP_003176696.1| - 0.17 12.0 3.1 0.33 11.0 3.1 1.5 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus DUF4446 PF14584.6 gi|257386923|ref|YP_003176696.1| - 0.19 11.7 3.1 0.22 11.5 0.2 2.1 1 1 0 2 2 2 0 Protein of unknown function (DUF4446) EzrA PF06160.12 gi|257386923|ref|YP_003176696.1| - 0.21 9.7 13.9 0.047 11.9 5.3 1.9 1 1 1 2 2 2 0 Septation ring formation regulator, EzrA Borrelia_P83 PF05262.11 gi|257386923|ref|YP_003176696.1| - 0.28 9.6 15.7 0.37 9.2 15.7 1.1 1 0 0 1 1 1 0 Borrelia P83/100 protein SKA1 PF07160.12 gi|257386923|ref|YP_003176696.1| - 0.39 10.5 5.1 0.5 10.2 5.1 1.1 1 0 0 1 1 1 0 Spindle and kinetochore-associated protein 1 Lebercilin PF15619.6 gi|257386923|ref|YP_003176696.1| - 0.51 10.0 8.6 1.4 8.6 8.6 1.6 1 1 0 1 1 1 0 Ciliary protein causing Leber congenital amaurosis disease Fez1 PF06818.15 gi|257386923|ref|YP_003176696.1| - 0.53 10.7 11.4 0.79 10.1 11.4 1.2 1 0 0 1 1 1 0 Fez1 Prominin PF05478.11 gi|257386923|ref|YP_003176696.1| - 0.54 8.2 1.0 0.67 7.8 1.0 1.2 1 0 0 1 1 1 0 Prominin TMPIT PF07851.13 gi|257386923|ref|YP_003176696.1| - 0.58 9.4 5.8 1.8 7.7 5.8 1.8 1 1 0 1 1 1 0 TMPIT-like protein YkyA PF10368.9 gi|257386923|ref|YP_003176696.1| - 0.62 9.7 17.3 0.54 9.9 10.1 2.1 1 1 1 2 2 2 0 Putative cell-wall binding lipoprotein Flagellin_N PF00669.20 gi|257386923|ref|YP_003176696.1| - 0.66 10.1 9.8 1.8 8.7 2.8 2.5 1 1 1 2 2 2 0 Bacterial flagellin N-terminal helical region FlgN PF05130.12 gi|257386923|ref|YP_003176696.1| - 0.87 10.1 9.2 9.7 6.7 9.2 2.3 1 1 0 1 1 1 0 FlgN protein LXG PF04740.12 gi|257386923|ref|YP_003176696.1| - 0.96 9.1 9.7 1.3 8.7 7.9 1.8 1 1 0 1 1 1 0 LXG domain of WXG superfamily AAA_13 PF13166.6 gi|257386923|ref|YP_003176696.1| - 1 7.9 11.7 1.4 7.5 11.7 1.1 1 0 0 1 1 1 0 AAA domain SesA PF17107.5 gi|257386923|ref|YP_003176696.1| - 1.1 9.5 10.5 0.42 10.8 4.3 2.1 1 1 1 2 2 2 0 N-terminal domain on NACHT_NTPase and P-loop NTPases TPR_MLP1_2 PF07926.12 gi|257386923|ref|YP_003176696.1| - 1.1 9.3 22.3 3 7.9 8.3 2.1 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein SlyX PF04102.12 gi|257386923|ref|YP_003176696.1| - 1.2 9.8 8.1 5.3 7.7 1.4 3.0 1 1 1 2 2 2 0 SlyX Nup88 PF10168.9 gi|257386923|ref|YP_003176696.1| - 1.3 6.7 6.7 1.7 6.4 6.7 1.0 1 0 0 1 1 1 0 Nuclear pore component V_ATPase_I PF01496.19 gi|257386923|ref|YP_003176696.1| - 1.7 6.4 5.1 2.4 5.9 5.1 1.2 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family XhlA PF10779.9 gi|257386923|ref|YP_003176696.1| - 1.8 8.9 12.3 6.1 7.1 2.9 2.8 2 0 0 2 2 2 0 Haemolysin XhlA TMP_2 PF06791.13 gi|257386923|ref|YP_003176696.1| - 1.8 8.2 16.1 0.91 9.2 13.1 1.9 1 1 1 2 2 2 0 Prophage tail length tape measure protein Sec34 PF04136.15 gi|257386923|ref|YP_003176696.1| - 2 8.3 5.4 2.6 7.9 1.6 2.1 1 1 1 2 2 2 0 Sec34-like family DUF3365 PF11845.8 gi|257386923|ref|YP_003176696.1| - 2.2 8.6 4.3 1.6 9.0 0.5 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF3365) Goodbye PF17109.5 gi|257386923|ref|YP_003176696.1| - 3 8.3 7.8 5.1 7.6 1.2 2.6 1 1 1 2 2 2 0 fungal STAND N-terminal Goodbye domain ZnuA PF01297.17 gi|257386923|ref|YP_003176696.1| - 3.5 7.0 13.9 3.6 6.9 10.5 2.4 2 1 0 2 2 2 0 Zinc-uptake complex component A periplasmic COG2 PF06148.11 gi|257386923|ref|YP_003176696.1| - 4.1 7.5 11.2 1.1 9.3 3.4 2.6 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 MAD PF05557.13 gi|257386923|ref|YP_003176696.1| - 6.9 4.9 15.8 0.53 8.6 4.0 1.7 1 1 1 2 2 2 0 Mitotic checkpoint protein Phage_holin_3_6 PF07332.11 gi|257386923|ref|YP_003176696.1| - 7.3 6.7 14.1 3.4 7.7 11.3 1.9 1 1 1 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III DivIC PF04977.15 gi|257386923|ref|YP_003176696.1| - 7.3 6.4 7.6 0.91 9.3 0.8 2.5 1 1 1 2 2 2 0 Septum formation initiator GldM_N PF12081.8 gi|257386923|ref|YP_003176696.1| - 8.1 6.5 17.9 7 6.7 6.1 2.1 1 1 1 2 2 2 0 GldM N-terminal domain His_biosynth PF00977.21 gi|257386924|ref|YP_003176697.1| - 2.1e-74 249.8 5.3 2.4e-74 249.7 5.3 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein DHO_dh PF01180.21 gi|257386924|ref|YP_003176697.1| - 6.1e-12 45.4 1.5 2.6e-07 30.1 0.3 2.2 2 0 0 2 2 2 2 Dihydroorotate dehydrogenase Dus PF01207.17 gi|257386924|ref|YP_003176697.1| - 6.3e-12 45.2 0.2 2.2e-05 23.7 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) NMO PF03060.15 gi|257386924|ref|YP_003176697.1| - 3.1e-08 33.4 8.7 9.4e-08 31.8 2.8 2.1 2 0 0 2 2 2 1 Nitronate monooxygenase ThiG PF05690.14 gi|257386924|ref|YP_003176697.1| - 5.5e-06 25.9 7.2 0.0059 16.0 0.5 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG IGPS PF00218.21 gi|257386924|ref|YP_003176697.1| - 7.9e-06 25.2 0.4 0.0017 17.6 0.0 2.9 2 2 2 4 4 4 1 Indole-3-glycerol phosphate synthase PcrB PF01884.17 gi|257386924|ref|YP_003176697.1| - 1.4e-05 24.7 5.5 0.0037 16.7 0.2 2.5 2 1 1 3 3 3 2 PcrB family G3P_antiterm PF04309.12 gi|257386924|ref|YP_003176697.1| - 1.7e-05 24.3 0.7 0.0012 18.3 0.1 2.2 2 0 0 2 2 2 1 Glycerol-3-phosphate responsive antiterminator Trp_syntA PF00290.20 gi|257386924|ref|YP_003176697.1| - 5.2e-05 22.2 2.4 0.012 14.5 0.3 2.2 2 0 0 2 2 2 2 Tryptophan synthase alpha chain NanE PF04131.14 gi|257386924|ref|YP_003176697.1| - 6.3e-05 22.3 1.3 0.017 14.3 0.3 2.3 2 0 0 2 2 2 2 Putative N-acetylmannosamine-6-phosphate epimerase TMP-TENI PF02581.17 gi|257386924|ref|YP_003176697.1| - 0.00028 20.3 1.7 0.0012 18.2 0.3 2.1 2 0 0 2 2 2 1 Thiamine monophosphate synthase IMPDH PF00478.25 gi|257386924|ref|YP_003176697.1| - 0.0007 18.7 7.8 0.011 14.7 1.3 2.4 2 1 1 3 3 3 2 IMP dehydrogenase / GMP reductase domain FMN_dh PF01070.18 gi|257386924|ref|YP_003176697.1| - 0.011 14.7 13.4 0.068 12.2 1.9 2.1 2 0 0 2 2 2 0 FMN-dependent dehydrogenase DNA_pol_lambd_f PF10391.9 gi|257386924|ref|YP_003176697.1| - 0.065 13.1 0.1 8.6 6.3 0.0 2.8 3 0 0 3 3 3 0 Fingers domain of DNA polymerase lambda B12-binding PF02310.19 gi|257386924|ref|YP_003176697.1| - 0.11 12.6 4.3 9.5 6.3 3.7 2.5 1 1 0 1 1 1 0 B12 binding domain Ribul_P_3_epim PF00834.19 gi|257386924|ref|YP_003176697.1| - 0.12 11.7 0.2 0.12 11.7 0.2 2.2 2 0 0 2 2 2 0 Ribulose-phosphate 3 epimerase family PA PF02225.22 gi|257386924|ref|YP_003176697.1| - 0.33 11.0 3.3 6 7.0 3.3 2.4 1 1 0 1 1 1 0 PA domain bPH_6 PF10756.9 gi|257386924|ref|YP_003176697.1| - 0.55 10.4 0.0 0.55 10.4 0.0 3.0 3 0 0 3 3 3 0 Bacterial PH domain Regulator_TrmB PF11495.8 gi|257386925|ref|YP_003176698.1| - 2.5e-36 125.0 0.0 3.2e-36 124.7 0.0 1.1 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.19 gi|257386925|ref|YP_003176698.1| - 3e-15 55.9 0.1 5.9e-15 54.9 0.1 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|257386925|ref|YP_003176698.1| - 0.002 18.4 0.2 0.36 11.2 0.0 2.5 2 0 0 2 2 2 1 Transcriptional regulator MarR_2 PF12802.7 gi|257386925|ref|YP_003176698.1| - 0.012 15.5 0.2 0.044 13.7 0.1 2.1 2 0 0 2 2 2 0 MarR family HTH_IclR PF09339.10 gi|257386925|ref|YP_003176698.1| - 0.027 14.3 0.0 0.085 12.7 0.0 1.9 1 0 0 1 1 1 0 IclR helix-turn-helix domain Cob_adeno_trans PF01923.18 gi|257386925|ref|YP_003176698.1| - 0.15 12.2 0.7 0.25 11.5 0.7 1.3 1 0 0 1 1 1 0 Cobalamin adenosyltransferase GntR PF00392.21 gi|257386925|ref|YP_003176698.1| - 0.23 11.1 1.5 20 4.9 0.0 3.3 3 0 0 3 3 3 0 Bacterial regulatory proteins, gntR family MFS_1 PF07690.16 gi|257386926|ref|YP_003176699.1| - 1.1e-29 103.5 51.6 3.5e-19 68.9 25.6 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_4 PF06779.14 gi|257386926|ref|YP_003176699.1| - 3.6e-05 23.2 33.4 5.8e-05 22.6 33.4 1.3 1 0 0 1 1 1 1 Uncharacterised MFS-type transporter YbfB OATP PF03137.20 gi|257386926|ref|YP_003176699.1| - 6.3 5.0 7.5 0.24 9.7 0.3 2.2 2 1 0 3 3 3 0 Organic Anion Transporter Polypeptide (OATP) family IGPD PF00475.18 gi|257386928|ref|YP_003176701.1| - 5.3e-62 208.4 1.7 5.3e-62 208.4 1.7 1.3 2 0 0 2 2 2 1 Imidazoleglycerol-phosphate dehydratase ACT PF01842.25 gi|257386929|ref|YP_003176702.1| - 0.0029 17.3 0.2 0.0091 15.7 0.0 2.0 2 0 0 2 2 2 1 ACT domain ACT_7 PF13840.6 gi|257386929|ref|YP_003176702.1| - 0.0067 16.2 0.1 0.013 15.2 0.1 1.5 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.6 gi|257386929|ref|YP_003176702.1| - 0.012 16.2 0.5 1.1 9.9 0.1 2.7 3 0 0 3 3 3 0 ACT domain Virul_fac_BrkB PF03631.15 gi|257386930|ref|YP_003176703.1| - 9.8e-39 133.5 20.9 1.2e-38 133.3 20.9 1.1 1 0 0 1 1 1 1 Virulence factor BrkB ST7 PF04184.12 gi|257386930|ref|YP_003176703.1| - 0.049 12.1 0.3 0.073 11.5 0.3 1.2 1 0 0 1 1 1 0 ST7 protein TetR_N PF00440.23 gi|257386931|ref|YP_003176704.1| - 0.019 14.7 0.0 0.043 13.6 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_AraC PF00165.23 gi|257386931|ref|YP_003176704.1| - 0.16 12.1 0.0 0.34 11.1 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix proteins, AraC family adh_short PF00106.25 gi|257386932|ref|YP_003176705.1| - 5e-25 88.1 0.0 2.9e-24 85.6 0.0 1.9 1 1 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|257386932|ref|YP_003176705.1| - 8.5e-19 68.0 0.1 3.1e-18 66.2 0.2 1.7 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|257386932|ref|YP_003176705.1| - 5.9e-08 32.8 0.5 8.9e-08 32.2 0.5 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|257386932|ref|YP_003176705.1| - 0.0006 19.3 0.2 0.00079 19.0 0.2 1.3 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family BAT PF15915.5 gi|257386932|ref|YP_003176705.1| - 0.012 15.5 1.1 0.027 14.3 1.1 1.6 1 0 0 1 1 1 0 GAF and HTH_10 associated domain ABC2_membrane_3 PF12698.7 gi|257386933|ref|YP_003176706.1| - 0.036 13.2 17.2 0.012 14.7 14.4 1.5 1 1 0 1 1 1 0 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|257386933|ref|YP_003176706.1| - 0.44 9.8 13.3 0.22 10.8 11.1 1.8 1 1 0 1 1 1 0 ABC-2 family transporter protein DUF2070 PF09843.9 gi|257386933|ref|YP_003176706.1| - 0.82 7.9 9.0 1.2 7.3 9.1 1.3 1 1 0 1 1 1 0 Predicted membrane protein (DUF2070) DUF4162 PF13732.6 gi|257386934|ref|YP_003176707.1| - 0.079 13.7 0.0 0.093 13.5 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4162) TetR_C_28 PF17937.1 gi|257386934|ref|YP_003176707.1| - 0.11 12.9 0.1 0.19 12.2 0.0 1.5 1 1 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain DDE_Tnp_IS1595 PF12762.7 gi|257386935|ref|YP_003176708.1| - 2.9e-22 79.3 0.0 4.1e-22 78.8 0.0 1.2 1 0 0 1 1 1 1 ISXO2-like transposase domain Zn_Tnp_IS1595 PF12760.7 gi|257386935|ref|YP_003176708.1| - 3.9e-10 39.5 0.9 8e-10 38.5 0.9 1.6 1 0 0 1 1 1 1 Transposase zinc-ribbon domain DUF2089 PF09862.9 gi|257386935|ref|YP_003176708.1| - 5.9e-07 29.5 0.0 1e-06 28.8 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2089) Zn_Tnp_IS1 PF03811.13 gi|257386935|ref|YP_003176708.1| - 1.5e-05 24.6 4.0 3.8e-05 23.3 4.0 1.7 1 0 0 1 1 1 1 InsA N-terminal domain TackOD1 PF18551.1 gi|257386935|ref|YP_003176708.1| - 0.007 16.1 0.2 0.011 15.4 0.2 1.2 1 0 0 1 1 1 1 Thaumarchaeal output domain 1 Zn-ribbon_8 PF09723.10 gi|257386935|ref|YP_003176708.1| - 0.017 15.2 0.5 3.1 8.0 0.1 2.5 2 0 0 2 2 2 0 Zinc ribbon domain HTH_23 PF13384.6 gi|257386935|ref|YP_003176708.1| - 0.023 14.5 0.0 0.082 12.7 0.0 1.9 1 0 0 1 1 1 0 Homeodomain-like domain HTH_29 PF13551.6 gi|257386935|ref|YP_003176708.1| - 0.023 14.7 0.1 0.094 12.7 0.1 2.0 1 0 0 1 1 1 0 Winged helix-turn helix ADK_lid PF05191.14 gi|257386935|ref|YP_003176708.1| - 0.041 13.9 2.6 0.041 13.9 0.1 2.1 2 0 0 2 2 2 0 Adenylate kinase, active site lid GerE PF00196.19 gi|257386935|ref|YP_003176708.1| - 0.041 13.4 0.0 0.085 12.4 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family zf-C4_Topoisom PF01396.19 gi|257386935|ref|YP_003176708.1| - 0.047 13.5 1.3 0.094 12.5 1.3 1.5 1 0 0 1 1 1 0 Topoisomerase DNA binding C4 zinc finger Sigma70_r4_2 PF08281.12 gi|257386935|ref|YP_003176708.1| - 0.099 12.3 0.0 0.3 10.8 0.0 1.8 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_11 PF08279.12 gi|257386935|ref|YP_003176708.1| - 0.1 12.6 0.0 0.2 11.6 0.0 1.5 1 0 0 1 1 1 0 HTH domain zinc-ribbons_6 PF07191.12 gi|257386935|ref|YP_003176708.1| - 0.11 12.4 0.3 0.2 11.6 0.3 1.4 1 0 0 1 1 1 0 zinc-ribbons Lar_restr_allev PF14354.6 gi|257386935|ref|YP_003176708.1| - 0.12 12.8 0.1 0.26 11.7 0.1 1.5 1 0 0 1 1 1 0 Restriction alleviation protein Lar zf-Dof PF02701.15 gi|257386935|ref|YP_003176708.1| - 0.18 12.0 3.5 0.37 11.0 3.5 1.5 1 0 0 1 1 1 0 Dof domain, zinc finger zf-C2H2_4 PF13894.6 gi|257386935|ref|YP_003176708.1| - 0.46 11.5 3.6 1.1 10.3 0.2 3.1 3 0 0 3 3 3 0 C2H2-type zinc finger zf-ISL3 PF14690.6 gi|257386935|ref|YP_003176708.1| - 0.84 10.4 5.8 7.6 7.3 0.2 2.9 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn_ribbon_recom PF13408.6 gi|257386935|ref|YP_003176708.1| - 2 9.0 6.4 2.3 8.8 4.8 2.0 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain zf-C2HC_2 PF13913.6 gi|257386935|ref|YP_003176708.1| - 4.9 7.2 8.0 0.23 11.4 1.4 2.1 2 0 0 2 2 2 0 zinc-finger of a C2HC-type ABC_tran PF00005.27 gi|257386936|ref|YP_003176709.1| - 1.2e-29 103.6 0.0 1.8e-29 103.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|257386936|ref|YP_003176709.1| - 6.7e-12 45.8 2.0 1.8e-07 31.3 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|257386936|ref|YP_003176709.1| - 0.0002 20.9 1.4 0.16 11.4 0.2 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|257386936|ref|YP_003176709.1| - 0.0051 17.2 0.0 0.0084 16.5 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|257386936|ref|YP_003176709.1| - 0.01 16.3 1.8 0.12 12.8 1.8 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 gi|257386936|ref|YP_003176709.1| - 0.013 15.2 0.3 0.025 14.3 0.3 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|257386936|ref|YP_003176709.1| - 0.014 15.1 0.0 3.2 7.4 0.0 2.1 1 1 0 2 2 2 0 AAA ATPase domain MukB PF04310.12 gi|257386936|ref|YP_003176709.1| - 0.015 15.1 0.1 0.031 14.1 0.1 1.4 1 0 0 1 1 1 0 MukB N-terminal AAA_23 PF13476.6 gi|257386936|ref|YP_003176709.1| - 0.018 15.5 1.7 0.042 14.3 1.7 1.7 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|257386936|ref|YP_003176709.1| - 0.057 13.1 0.6 0.18 11.5 0.1 1.9 2 0 0 2 2 2 0 AAA domain SRP54 PF00448.22 gi|257386936|ref|YP_003176709.1| - 0.084 12.5 0.0 0.15 11.6 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_19 PF13245.6 gi|257386936|ref|YP_003176709.1| - 0.18 12.1 1.0 0.3 11.4 1.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_27 PF13514.6 gi|257386936|ref|YP_003176709.1| - 0.21 11.2 0.0 0.39 10.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|257386936|ref|YP_003176709.1| - 0.33 10.6 1.8 0.66 9.7 0.3 2.1 2 1 0 3 3 3 0 AAA domain AIG1 PF04548.16 gi|257386936|ref|YP_003176709.1| - 0.51 9.6 4.4 2.9 7.1 0.4 2.2 2 0 0 2 2 2 0 AIG1 family Fer2 PF00111.27 gi|257386939|ref|YP_003176712.1| - 6.6e-07 29.2 0.4 1.1e-06 28.4 0.4 1.4 1 1 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_4 PF13510.6 gi|257386939|ref|YP_003176712.1| - 0.055 13.5 0.7 0.15 12.1 0.7 1.8 1 1 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain UPF0029 PF01205.19 gi|257386940|ref|YP_003176713.1| - 2.7e-30 104.8 0.0 3.6e-30 104.4 0.0 1.2 1 0 0 1 1 1 1 Uncharacterized protein family UPF0029 DUF1949 PF09186.11 gi|257386940|ref|YP_003176713.1| - 2.9e-12 46.2 0.7 4.8e-12 45.6 0.1 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF1949) EFG_C PF00679.24 gi|257386940|ref|YP_003176713.1| - 0.0019 18.2 0.0 0.0042 17.1 0.0 1.6 1 0 0 1 1 1 1 Elongation factor G C-terminus UPRTase PF14681.6 gi|257386941|ref|YP_003176714.1| - 3.9e-48 163.6 0.0 4.5e-48 163.4 0.0 1.0 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase Pribosyltran PF00156.27 gi|257386941|ref|YP_003176714.1| - 7e-08 32.1 0.2 1.1e-07 31.5 0.2 1.3 1 0 0 1 1 1 1 Phosphoribosyl transferase domain NOA36 PF06524.12 gi|257386942|ref|YP_003176715.1| - 0.15 11.3 3.0 0.15 11.3 3.0 1.1 1 0 0 1 1 1 0 NOA36 protein DctM PF06808.12 gi|257386943|ref|YP_003176716.1| - 2.2e-82 277.1 57.9 2e-53 181.7 26.2 3.0 3 0 0 3 3 3 2 Tripartite ATP-independent periplasmic transporter, DctM component DUF1850 PF08905.11 gi|257386944|ref|YP_003176717.1| - 2.8e-25 88.5 0.0 5.1e-25 87.6 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1850) NMT1_3 PF16868.5 gi|257386945|ref|YP_003176718.1| - 2.8e-68 230.5 4.5 3.4e-68 230.2 4.5 1.0 1 0 0 1 1 1 1 NMT1-like family Phosphonate-bd PF12974.7 gi|257386945|ref|YP_003176718.1| - 1.5e-08 34.6 5.4 3.1e-08 33.5 5.4 1.4 1 1 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein NMT1 PF09084.11 gi|257386945|ref|YP_003176718.1| - 8.2e-08 32.4 2.3 3.8e-07 30.3 0.4 2.4 2 1 0 2 2 2 1 NMT1/THI5 like NMT1_2 PF13379.6 gi|257386945|ref|YP_003176718.1| - 0.0016 18.2 0.6 0.16 11.6 0.1 2.2 1 1 1 2 2 2 2 NMT1-like family TAT_signal PF10518.9 gi|257386945|ref|YP_003176718.1| - 0.12 12.3 0.4 0.31 10.9 0.4 1.8 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence AAA_assoc_2 PF16193.5 gi|257386946|ref|YP_003176719.1| - 0.07 13.5 0.5 0.27 11.6 0.5 2.0 1 1 0 1 1 1 0 AAA C-terminal domain PKD PF00801.20 gi|257386947|ref|YP_003176720.1| - 9e-16 57.5 5.3 3.7e-15 55.5 5.3 2.1 1 0 0 1 1 1 1 PKD domain Glyco_hydro_18 PF00704.28 gi|257386947|ref|YP_003176720.1| - 4.2e-11 43.1 1.0 1e-08 35.3 0.1 2.2 1 1 1 2 2 2 2 Glycosyl hydrolases family 18 CBM_5_12_2 PF14600.6 gi|257386947|ref|YP_003176720.1| - 0.00036 20.4 1.6 0.0017 18.2 1.6 2.2 1 0 0 1 1 1 1 Cellulose-binding domain DUF4784 PF16023.5 gi|257386947|ref|YP_003176720.1| - 0.03 13.3 0.2 0.045 12.7 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4784) CBM_5_12 PF02839.14 gi|257386947|ref|YP_003176720.1| - 0.03 14.9 1.0 0.18 12.5 1.0 2.4 1 0 0 1 1 1 0 Carbohydrate binding domain PHO4 PF01384.20 gi|257386948|ref|YP_003176721.1| - 1.4e-49 169.0 24.1 1.4e-49 169.0 24.1 1.4 1 1 0 1 1 1 1 Phosphate transporter family DUF21 PF01595.20 gi|257386949|ref|YP_003176722.1| - 6.3e-49 166.0 0.5 9.4e-49 165.5 0.5 1.2 1 0 0 1 1 1 1 Cyclin M transmembrane N-terminal domain CorC_HlyC PF03471.17 gi|257386949|ref|YP_003176722.1| - 1e-19 70.3 2.2 1e-19 70.3 2.2 1.8 2 0 0 2 2 2 1 Transporter associated domain CBS PF00571.28 gi|257386949|ref|YP_003176722.1| - 5.6e-13 49.1 3.4 1.9e-05 25.0 0.1 2.9 3 0 0 3 3 3 2 CBS domain DUF4386 PF14329.6 gi|257386949|ref|YP_003176722.1| - 0.027 14.3 1.8 0.043 13.7 1.8 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4386) PHB_acc_N PF07879.11 gi|257386949|ref|YP_003176722.1| - 0.1 12.7 2.1 0.97 9.6 0.1 2.8 3 0 0 3 3 3 0 PHB/PHA accumulation regulator DNA-binding domain GST_N_3 PF13417.6 gi|257386950|ref|YP_003176723.1| - 2.9e-14 53.2 0.0 3.5e-14 53.0 0.0 1.0 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N_2 PF13409.6 gi|257386950|ref|YP_003176723.1| - 1.6e-12 47.5 0.0 1.9e-12 47.3 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Glutaredoxin PF00462.24 gi|257386950|ref|YP_003176723.1| - 3.4e-12 46.4 0.1 4.7e-12 45.9 0.1 1.2 1 0 0 1 1 1 1 Glutaredoxin GST_N PF02798.20 gi|257386950|ref|YP_003176723.1| - 6.2e-06 26.5 0.0 7.1e-06 26.3 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain DUF836 PF05768.14 gi|257386950|ref|YP_003176723.1| - 0.026 14.9 0.0 0.037 14.4 0.0 1.3 1 0 0 1 1 1 0 Glutaredoxin-like domain (DUF836) AhpC-TSA PF00578.21 gi|257386951|ref|YP_003176724.1| - 2.2e-16 59.9 0.0 2.7e-16 59.6 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|257386951|ref|YP_003176724.1| - 0.00017 21.3 0.0 0.001 18.8 0.0 1.9 1 1 0 1 1 1 1 Redoxin Sua5_yciO_yrdC PF01300.18 gi|257386952|ref|YP_003176725.1| - 1.7e-50 171.0 0.0 2e-50 170.8 0.0 1.0 1 0 0 1 1 1 1 Telomere recombination DUF2073 PF09846.9 gi|257386952|ref|YP_003176725.1| - 0.018 14.9 0.0 0.027 14.3 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2073) Cas_Cas4 PF01930.17 gi|257386953|ref|YP_003176726.1| - 0.00055 20.1 0.0 0.0042 17.2 0.0 1.9 2 0 0 2 2 2 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.7 gi|257386953|ref|YP_003176726.1| - 0.049 13.5 0.1 0.37 10.7 0.0 2.1 2 0 0 2 2 2 0 PD-(D/E)XK nuclease superfamily CP_ATPgrasp_2 PF14403.6 gi|257386953|ref|YP_003176726.1| - 0.088 11.7 0.0 0.12 11.3 0.0 1.1 1 0 0 1 1 1 0 Circularly permuted ATP-grasp type 2 Polysacc_deac_1 PF01522.21 gi|257386954|ref|YP_003176727.1| - 1.1e-15 57.6 0.1 4.9e-12 45.8 0.0 2.3 2 0 0 2 2 2 2 Polysaccharide deacetylase DUF2334 PF10096.9 gi|257386954|ref|YP_003176727.1| - 5e-07 29.6 0.0 7.9e-07 28.9 0.0 1.3 1 1 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2334) LpqV PF17301.2 gi|257386954|ref|YP_003176727.1| - 0.022 15.0 0.0 0.052 13.8 0.0 1.6 1 0 0 1 1 1 0 Putative lipoprotein LpqV Hjc PF01870.18 gi|257386955|ref|YP_003176728.1| - 1.1e-29 102.2 0.0 1.5e-29 101.8 0.0 1.2 1 0 0 1 1 1 1 Archaeal holliday junction resolvase (hjc) DUF5590 PF17881.1 gi|257386955|ref|YP_003176728.1| - 0.16 12.1 0.0 2 8.6 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF5590) 7TM-7TMR_HD PF07698.11 gi|257386956|ref|YP_003176729.1| - 0.012 15.3 2.0 0.015 15.0 2.0 1.0 1 0 0 1 1 1 0 7TM receptor with intracellular HD hydrolase TetR_C_6 PF13977.6 gi|257386957|ref|YP_003176730.1| - 5.9e-12 45.8 1.5 1.1e-11 45.0 1.5 1.4 1 0 0 1 1 1 1 BetI-type transcriptional repressor, C-terminal TetR_N PF00440.23 gi|257386957|ref|YP_003176730.1| - 1.5e-08 34.3 0.1 2.8e-08 33.4 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_24 PF17932.1 gi|257386957|ref|YP_003176730.1| - 0.00023 21.4 0.3 0.00066 19.9 0.2 2.0 1 1 1 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_27 PF17935.1 gi|257386957|ref|YP_003176730.1| - 0.00071 19.6 0.1 0.0017 18.4 0.1 1.6 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_11 PF16859.5 gi|257386957|ref|YP_003176730.1| - 0.0026 18.1 2.9 0.0049 17.2 2.5 1.8 1 1 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_29 PF17938.1 gi|257386957|ref|YP_003176730.1| - 0.0038 17.3 0.0 0.008 16.3 0.0 1.6 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_31 PF17940.1 gi|257386957|ref|YP_003176730.1| - 0.0073 16.5 2.7 0.013 15.7 2.7 1.5 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_17 PF17922.1 gi|257386957|ref|YP_003176730.1| - 0.062 13.4 0.0 0.32 11.1 0.0 2.0 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain DUF2237 PF09996.9 gi|257386958|ref|YP_003176731.1| - 1.2e-48 163.9 0.0 1.4e-48 163.7 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2237) HA PF03457.14 gi|257386958|ref|YP_003176731.1| - 0.15 12.4 0.0 0.19 12.1 0.0 1.3 1 0 0 1 1 1 0 Helicase associated domain Methyltransf_31 PF13847.6 gi|257386959|ref|YP_003176732.1| - 4.6e-21 75.2 0.0 5.7e-21 74.9 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|257386959|ref|YP_003176732.1| - 8.5e-20 71.3 0.3 1.9e-19 70.1 0.2 1.6 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|257386959|ref|YP_003176732.1| - 1.1e-17 64.4 0.1 1.8e-17 63.7 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|257386959|ref|YP_003176732.1| - 2.2e-15 57.2 0.0 4.1e-15 56.3 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|257386959|ref|YP_003176732.1| - 1.2e-12 47.9 0.0 1.6e-12 47.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|257386959|ref|YP_003176732.1| - 5.2e-09 36.2 0.0 7.3e-09 35.7 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Ubie_methyltran PF01209.18 gi|257386959|ref|YP_003176732.1| - 1.5e-08 34.3 0.0 2.1e-08 33.8 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.14 gi|257386959|ref|YP_003176732.1| - 2.6e-07 30.4 0.0 3.8e-07 29.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_32 PF13679.6 gi|257386959|ref|YP_003176732.1| - 2e-06 27.9 0.0 2.7e-06 27.5 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain DREV PF05219.12 gi|257386959|ref|YP_003176732.1| - 0.00022 20.4 0.0 0.00031 19.9 0.0 1.1 1 0 0 1 1 1 1 DREV methyltransferase NodS PF05401.11 gi|257386959|ref|YP_003176732.1| - 0.00031 20.4 0.0 0.0011 18.7 0.0 1.7 2 0 0 2 2 2 1 Nodulation protein S (NodS) CMAS PF02353.20 gi|257386959|ref|YP_003176732.1| - 0.00095 18.5 0.0 0.0012 18.2 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Fibrillarin PF01269.17 gi|257386959|ref|YP_003176732.1| - 0.0015 17.7 0.1 0.0044 16.2 0.0 1.7 2 0 0 2 2 2 1 Fibrillarin MetW PF07021.12 gi|257386959|ref|YP_003176732.1| - 0.0018 17.9 0.0 0.0034 17.0 0.0 1.4 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Methyltr_RsmB-F PF01189.17 gi|257386959|ref|YP_003176732.1| - 0.002 17.8 0.0 0.0031 17.2 0.0 1.3 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F FtsJ PF01728.19 gi|257386959|ref|YP_003176732.1| - 0.0022 18.1 0.0 0.0031 17.7 0.0 1.2 1 0 0 1 1 1 1 FtsJ-like methyltransferase CheR PF01739.18 gi|257386959|ref|YP_003176732.1| - 0.0035 16.9 0.0 1.7 8.1 0.1 2.1 1 1 1 2 2 2 2 CheR methyltransferase, SAM binding domain Methyltransf_4 PF02390.17 gi|257386959|ref|YP_003176732.1| - 0.025 14.0 0.0 0.039 13.4 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase RrnaAD PF00398.20 gi|257386959|ref|YP_003176732.1| - 0.032 13.3 0.0 0.05 12.7 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase PrmA PF06325.13 gi|257386959|ref|YP_003176732.1| - 0.034 13.5 0.2 0.046 13.1 0.2 1.2 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_9 PF08003.11 gi|257386959|ref|YP_003176732.1| - 0.058 12.3 0.0 0.088 11.7 0.0 1.3 1 1 0 1 1 1 0 Protein of unknown function (DUF1698) SnoaL_2 PF12680.7 gi|257386959|ref|YP_003176732.1| - 0.1 13.3 2.8 4.8 7.9 0.0 3.2 2 1 1 3 3 3 0 SnoaL-like domain FUSC PF04632.12 gi|257386960|ref|YP_003176733.1| - 0.047 12.2 1.5 0.052 12.1 1.5 1.0 1 0 0 1 1 1 0 Fusaric acid resistance protein family DUF123 PF01986.16 gi|257386961|ref|YP_003176734.1| - 6.9e-31 106.6 0.0 8.7e-31 106.3 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function DUF123 4HBT PF03061.22 gi|257386962|ref|YP_003176735.1| - 2.9e-16 59.6 0.1 4e-16 59.1 0.1 1.2 1 0 0 1 1 1 1 Thioesterase superfamily Peptidase_M56 PF05569.11 gi|257386963|ref|YP_003176736.1| - 0.14 11.3 0.0 0.14 11.3 0.0 1.0 1 0 0 1 1 1 0 BlaR1 peptidase M56 CcmH PF03918.14 gi|257386963|ref|YP_003176736.1| - 0.2 11.0 0.0 0.26 10.6 0.0 1.1 1 0 0 1 1 1 0 Cytochrome C biogenesis protein tRNA-synt_1 PF00133.22 gi|257386964|ref|YP_003176737.1| - 5e-60 203.4 0.0 2.2e-38 131.9 0.8 5.0 1 1 1 2 2 2 2 tRNA synthetases class I (I, L, M and V) tRNA-synt_1_2 PF13603.6 gi|257386964|ref|YP_003176737.1| - 8.2e-52 175.4 0.0 1.3e-51 174.8 0.0 1.3 1 0 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1g PF09334.11 gi|257386964|ref|YP_003176737.1| - 1.2e-31 109.9 0.0 7.2e-25 87.6 0.0 4.1 4 0 0 4 4 4 2 tRNA synthetases class I (M) Anticodon_1 PF08264.13 gi|257386964|ref|YP_003176737.1| - 9.7e-15 54.8 0.0 1.7e-14 54.1 0.0 1.3 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1f PF01921.18 gi|257386964|ref|YP_003176737.1| - 0.00014 20.9 0.0 1.1 8.1 0.0 3.3 3 1 0 3 3 3 2 tRNA synthetases class I (K) DZR PF12773.7 gi|257386964|ref|YP_003176737.1| - 0.0013 18.7 2.1 1.3 9.1 0.1 2.5 2 0 0 2 2 2 2 Double zinc ribbon DNA_ligase_ZBD PF03119.16 gi|257386964|ref|YP_003176737.1| - 0.003 17.5 2.7 0.1 12.7 0.0 3.2 2 1 1 3 3 3 1 NAD-dependent DNA ligase C4 zinc finger domain zf-ribbon_3 PF13248.6 gi|257386964|ref|YP_003176737.1| - 0.0034 16.7 8.2 1.9 8.0 0.1 4.3 4 0 0 4 4 4 2 zinc-ribbon domain tRNA-synt_1e PF01406.19 gi|257386964|ref|YP_003176737.1| - 0.0067 15.8 0.0 1.1 8.5 0.1 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain TF_Zn_Ribbon PF08271.12 gi|257386964|ref|YP_003176737.1| - 0.053 13.1 14.1 1.7 8.2 0.2 4.3 3 1 1 4 4 4 0 TFIIB zinc-binding Lar_restr_allev PF14354.6 gi|257386964|ref|YP_003176737.1| - 0.71 10.3 5.6 17 5.9 0.0 3.8 2 2 2 4 4 4 0 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.10 gi|257386964|ref|YP_003176737.1| - 0.88 9.7 9.3 0.39 10.9 0.2 3.7 4 0 0 4 4 4 0 Zinc ribbon domain SQS_PSY PF00494.19 gi|257386965|ref|YP_003176738.1| - 1.2e-43 149.5 1.9 1.5e-43 149.2 1.9 1.1 1 0 0 1 1 1 1 Squalene/phytoene synthase PHO4 PF01384.20 gi|257386966|ref|YP_003176739.1| - 6.3e-42 143.8 29.3 7.8e-42 143.5 29.3 1.1 1 0 0 1 1 1 1 Phosphate transporter family Usp PF00582.26 gi|257386967|ref|YP_003176740.1| - 4.6e-26 92.0 5.7 1.6e-24 87.0 5.7 2.0 1 1 0 1 1 1 1 Universal stress protein family NPV_P10 PF05531.12 gi|257386968|ref|YP_003176741.1| - 0.00075 19.9 0.0 0.19 12.2 0.0 2.4 2 0 0 2 2 2 2 Nucleopolyhedrovirus P10 protein kleA_kleC PF17383.2 gi|257386968|ref|YP_003176741.1| - 0.0018 18.6 2.1 0.72 10.2 0.1 2.7 3 0 0 3 3 3 2 Uncharacterized KorC regulated protein A DUF3053 PF11254.8 gi|257386968|ref|YP_003176741.1| - 0.018 14.7 0.2 0.035 13.7 0.1 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3053) FliD_C PF07195.12 gi|257386968|ref|YP_003176741.1| - 0.053 12.9 0.0 0.76 9.2 0.0 2.1 2 0 0 2 2 2 0 Flagellar hook-associated protein 2 C-terminus DUF4245 PF14030.6 gi|257386968|ref|YP_003176741.1| - 0.13 12.2 4.7 4.4 7.3 1.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4245) TBCC_N PF16752.5 gi|257386968|ref|YP_003176741.1| - 0.17 12.3 0.0 9.8 6.7 0.0 2.4 3 0 0 3 3 3 0 Tubulin-specific chaperone C N-terminal domain DUF2070 PF09843.9 gi|257386969|ref|YP_003176742.1| - 3.8 5.7 5.5 4.2 5.5 5.5 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) FHIPEP PF00771.20 gi|257386969|ref|YP_003176742.1| - 5.4 5.4 5.8 6.3 5.1 5.8 1.1 1 0 0 1 1 1 0 FHIPEP family IMP_cyclohyd PF07826.11 gi|257386970|ref|YP_003176743.1| - 6.6e-66 221.6 0.0 8.2e-66 221.3 0.0 1.0 1 0 0 1 1 1 1 IMP cyclohydrolase-like protein NifU PF01106.17 gi|257386971|ref|YP_003176744.1| - 6.1e-14 51.9 0.2 9.7e-14 51.3 0.2 1.4 1 1 0 1 1 1 1 NifU-like domain Ald_Xan_dh_C2 PF02738.18 gi|257386971|ref|YP_003176744.1| - 0.057 11.9 0.1 0.067 11.6 0.1 1.0 1 0 0 1 1 1 0 Molybdopterin-binding domain of aldehyde dehydrogenase LPAM_1 PF08139.12 gi|257386972|ref|YP_003176745.1| - 4.6 7.9 6.1 9.1 7.0 6.1 1.5 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site MFS_1 PF07690.16 gi|257386973|ref|YP_003176746.1| - 7.5e-33 113.9 56.1 6.7e-19 68.0 25.9 2.2 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.6 gi|257386973|ref|YP_003176746.1| - 2.2e-06 26.5 24.8 1.6e-05 23.7 7.7 3.1 2 1 1 3 3 3 3 MFS/sugar transport protein MFS_1_like PF12832.7 gi|257386973|ref|YP_003176746.1| - 2.6e-05 23.3 10.0 0.02 13.8 6.6 2.2 2 0 0 2 2 2 2 MFS_1 like family Pribosyltran_N PF13793.6 gi|257386974|ref|YP_003176747.1| - 2e-18 66.4 0.0 5.4e-18 65.0 0.0 1.7 2 1 0 2 2 2 1 N-terminal domain of ribose phosphate pyrophosphokinase Pribosyltran PF00156.27 gi|257386974|ref|YP_003176747.1| - 4e-10 39.4 1.9 4.9e-10 39.2 0.9 1.6 2 0 0 2 2 2 1 Phosphoribosyl transferase domain Pribosyl_synth PF14572.6 gi|257386974|ref|YP_003176747.1| - 4.2e-07 30.2 0.7 7.7e-07 29.3 0.7 1.4 1 0 0 1 1 1 1 Phosphoribosyl synthetase-associated domain UPRTase PF14681.6 gi|257386974|ref|YP_003176747.1| - 0.00012 21.6 0.0 0.0002 20.9 0.0 1.3 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase HalOD1 PF18545.1 gi|257386975|ref|YP_003176748.1| - 0.011 16.0 0.3 0.029 14.6 0.3 1.8 1 0 0 1 1 1 0 Halobacterial output domain 1 DUF4349 PF14257.6 gi|257386976|ref|YP_003176749.1| - 7.2e-53 179.2 0.2 1e-52 178.7 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4349) HOOK PF05622.12 gi|257386976|ref|YP_003176749.1| - 0.013 13.7 3.1 0.017 13.3 3.1 1.0 1 0 0 1 1 1 0 HOOK protein ABC_tran_CTD PF16326.5 gi|257386976|ref|YP_003176749.1| - 0.062 13.5 7.2 0.1 12.9 7.2 1.3 1 0 0 1 1 1 0 ABC transporter C-terminal domain HEPN_DZIP3 PF18738.1 gi|257386976|ref|YP_003176749.1| - 0.084 12.6 0.2 0.14 11.9 0.2 1.3 1 0 0 1 1 1 0 DZIP3/ hRUL138-like HEPN Imm2 PF14426.6 gi|257386976|ref|YP_003176749.1| - 0.1 12.7 1.5 19 5.4 0.8 2.9 2 1 0 2 2 2 0 Immunity protein Imm2 Smoothelin PF12510.8 gi|257386976|ref|YP_003176749.1| - 0.1 12.6 7.4 0.057 13.5 4.9 1.8 1 1 0 1 1 1 0 Smoothelin cytoskeleton protein Spc7 PF08317.11 gi|257386976|ref|YP_003176749.1| - 0.11 11.4 4.3 0.14 11.0 4.3 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein S_4TM PF18159.1 gi|257386976|ref|YP_003176749.1| - 0.15 11.4 3.0 0.27 10.5 3.0 1.4 1 0 0 1 1 1 0 SMODS-associating 4TM effector domain FUSC PF04632.12 gi|257386976|ref|YP_003176749.1| - 0.19 10.2 0.2 0.28 9.7 0.0 1.4 2 0 0 2 2 2 0 Fusaric acid resistance protein family TPD52 PF04201.15 gi|257386976|ref|YP_003176749.1| - 0.25 10.9 2.3 0.39 10.3 2.3 1.2 1 0 0 1 1 1 0 Tumour protein D52 family DUF4140 PF13600.6 gi|257386976|ref|YP_003176749.1| - 0.37 11.3 10.3 1.2 9.6 10.3 1.9 1 1 0 1 1 1 0 N-terminal domain of unknown function (DUF4140) DHR10 PF18595.1 gi|257386976|ref|YP_003176749.1| - 0.48 10.5 11.3 0.36 10.9 1.9 2.2 1 1 1 2 2 2 0 Designed helical repeat protein 10 domain DivIC PF04977.15 gi|257386976|ref|YP_003176749.1| - 1.3 8.8 9.3 0.79 9.5 2.4 2.4 1 1 1 2 2 2 0 Septum formation initiator Aminotran_3 PF00202.21 gi|257386977|ref|YP_003176750.1| - 6.5e-68 229.2 0.0 7.5e-68 229.0 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-III Aminotran_1_2 PF00155.21 gi|257386977|ref|YP_003176750.1| - 0.00066 19.0 0.0 0.0011 18.2 0.0 1.4 1 1 0 1 1 1 1 Aminotransferase class I and II MoeA_N PF03453.17 gi|257386978|ref|YP_003176751.1| - 2.7e-16 59.7 8.2 3.3e-16 59.4 8.2 1.1 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|257386979|ref|YP_003176752.1| - 1.3e-31 109.2 1.2 1.5e-31 109.0 1.2 1.0 1 0 0 1 1 1 1 Probable molybdopterin binding domain Spore_III_AE PF09546.10 gi|257386979|ref|YP_003176752.1| - 0.23 10.6 0.0 0.3 10.3 0.0 1.1 1 0 0 1 1 1 0 Stage III sporulation protein AE (spore_III_AE) MoaC PF01967.21 gi|257386980|ref|YP_003176753.1| - 3.1e-47 160.1 1.4 3.5e-47 159.9 1.4 1.0 1 0 0 1 1 1 1 MoaC family MoaE PF02391.17 gi|257386982|ref|YP_003176755.1| - 6.2e-28 97.3 1.1 8.2e-28 97.0 0.3 1.6 2 0 0 2 2 2 1 MoaE protein MobB PF03205.14 gi|257386982|ref|YP_003176755.1| - 2.7e-22 79.1 0.0 4.6e-22 78.3 0.0 1.4 1 0 0 1 1 1 1 Molybdopterin guanine dinucleotide synthesis protein B MeaB PF03308.16 gi|257386982|ref|YP_003176755.1| - 0.006 15.6 0.0 0.012 14.6 0.0 1.5 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB NTPase_1 PF03266.15 gi|257386982|ref|YP_003176755.1| - 0.012 15.5 0.0 0.021 14.7 0.0 1.4 1 0 0 1 1 1 0 NTPase MMR_HSR1 PF01926.23 gi|257386982|ref|YP_003176755.1| - 0.018 15.1 0.0 0.035 14.2 0.0 1.5 1 0 0 1 1 1 0 50S ribosome-binding GTPase GTP_EFTU PF00009.27 gi|257386982|ref|YP_003176755.1| - 0.024 14.2 0.1 0.04 13.5 0.1 1.4 1 0 0 1 1 1 0 Elongation factor Tu GTP binding domain AAA_16 PF13191.6 gi|257386982|ref|YP_003176755.1| - 0.026 14.9 0.2 0.047 14.1 0.2 1.7 1 1 0 1 1 1 0 AAA ATPase domain PRK PF00485.18 gi|257386982|ref|YP_003176755.1| - 0.064 13.0 0.0 0.095 12.4 0.0 1.2 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_33 PF13671.6 gi|257386982|ref|YP_003176755.1| - 0.066 13.4 0.1 0.27 11.4 0.0 2.2 3 0 0 3 3 3 0 AAA domain cobW PF02492.19 gi|257386982|ref|YP_003176755.1| - 0.1 12.2 0.0 0.17 11.4 0.0 1.4 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain Roc PF08477.13 gi|257386982|ref|YP_003176755.1| - 0.11 12.7 0.0 0.19 11.9 0.0 1.3 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase AAA_22 PF13401.6 gi|257386982|ref|YP_003176755.1| - 0.13 12.5 0.0 0.26 11.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain CheC PF04509.12 gi|257386983|ref|YP_003176756.1| - 7.9e-15 54.5 0.4 2.5e-14 52.9 0.4 1.9 1 0 0 1 1 1 1 CheC-like family CheX PF13690.6 gi|257386983|ref|YP_003176756.1| - 0.00032 20.8 0.1 0.00051 20.2 0.1 1.3 1 0 0 1 1 1 1 Chemotaxis phosphatase CheX HTH_24 PF13412.6 gi|257386984|ref|YP_003176757.1| - 6.9e-14 51.1 0.0 6.5e-13 48.0 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|257386984|ref|YP_003176757.1| - 5.3e-11 42.2 1.1 7.3e-11 41.7 0.4 1.6 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.21 gi|257386984|ref|YP_003176757.1| - 6.7e-09 35.6 0.0 9.4e-09 35.1 0.0 1.3 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain MarR_2 PF12802.7 gi|257386984|ref|YP_003176757.1| - 4.7e-05 23.2 0.0 8e-05 22.4 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_28 PF13518.6 gi|257386984|ref|YP_003176757.1| - 0.00011 22.3 0.0 0.00017 21.7 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|257386984|ref|YP_003176757.1| - 0.00046 20.0 0.0 0.0007 19.4 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|257386984|ref|YP_003176757.1| - 0.00093 19.0 0.0 0.0015 18.4 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|257386984|ref|YP_003176757.1| - 0.0047 17.0 0.0 0.0071 16.4 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|257386984|ref|YP_003176757.1| - 0.0063 16.4 0.0 0.014 15.3 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|257386984|ref|YP_003176757.1| - 0.013 15.5 0.0 0.022 14.7 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_23 PF13384.6 gi|257386984|ref|YP_003176757.1| - 0.023 14.5 0.0 0.041 13.7 0.0 1.3 1 0 0 1 1 1 0 Homeodomain-like domain HTH_27 PF13463.6 gi|257386984|ref|YP_003176757.1| - 0.059 13.9 0.1 0.75 10.3 0.0 2.4 2 1 1 3 3 3 0 Winged helix DNA-binding domain Fe_dep_repress PF01325.19 gi|257386984|ref|YP_003176757.1| - 0.1 12.8 0.0 0.24 11.6 0.0 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_IclR PF09339.10 gi|257386984|ref|YP_003176757.1| - 0.14 12.0 0.0 0.23 11.3 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain P-II PF00543.22 gi|257386985|ref|YP_003176758.1| - 7e-34 116.5 0.3 8e-34 116.3 0.3 1.0 1 0 0 1 1 1 1 Nitrogen regulatory protein P-II ABC_ATPase PF09818.9 gi|257386985|ref|YP_003176758.1| - 0.044 12.6 0.3 0.071 11.9 0.3 1.2 1 0 0 1 1 1 0 Predicted ATPase of the ABC class Ammonium_transp PF00909.21 gi|257386986|ref|YP_003176759.1| - 5.1e-97 325.1 43.6 6e-97 324.8 43.6 1.1 1 0 0 1 1 1 1 Ammonium Transporter Family PsbY PF06298.11 gi|257386986|ref|YP_003176759.1| - 0.021 14.7 0.3 0.021 14.7 0.3 2.3 2 0 0 2 2 2 0 Photosystem II protein Y (PsbY) ALAD PF00490.21 gi|257386988|ref|YP_003176761.1| - 2.6e-142 473.7 0.1 3e-142 473.5 0.1 1.0 1 0 0 1 1 1 1 Delta-aminolevulinic acid dehydratase DUF3784 PF12650.7 gi|257386989|ref|YP_003176762.1| - 0.019 15.2 8.0 0.53 10.5 0.9 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF3784) E1-E2_ATPase PF00122.20 gi|257386989|ref|YP_003176762.1| - 0.046 13.2 0.9 0.053 13.0 0.9 1.1 1 0 0 1 1 1 0 E1-E2 ATPase Virul_fac_BrkB PF03631.15 gi|257386989|ref|YP_003176762.1| - 0.29 10.7 8.3 0.33 10.5 8.3 1.0 1 0 0 1 1 1 0 Virulence factor BrkB PetM PF08041.11 gi|257386989|ref|YP_003176762.1| - 1.3 8.7 11.4 0.8 9.3 0.5 3.2 3 1 0 3 3 3 0 PetM family of cytochrome b6f complex subunit 7 DUF202 PF02656.15 gi|257386989|ref|YP_003176762.1| - 2.7 8.5 12.2 87 3.7 12.2 2.2 1 1 0 1 1 1 0 Domain of unknown function (DUF202) SNARE_assoc PF09335.11 gi|257386990|ref|YP_003176763.1| - 4.7e-13 49.7 3.4 4.7e-13 49.7 3.4 2.4 2 1 0 2 2 2 1 SNARE associated Golgi protein HTH_24 PF13412.6 gi|257386991|ref|YP_003176764.1| - 7e-14 51.1 0.3 1.1e-13 50.5 0.3 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|257386991|ref|YP_003176764.1| - 1.3e-13 50.5 2.0 3.6e-13 49.1 2.3 1.6 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|257386991|ref|YP_003176764.1| - 2.5e-06 27.3 0.1 5.2e-06 26.3 0.1 1.5 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.7 gi|257386991|ref|YP_003176764.1| - 7.1e-06 25.8 0.0 1.3e-05 25.0 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|257386991|ref|YP_003176764.1| - 2e-05 24.3 0.0 3.2e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|257386991|ref|YP_003176764.1| - 2.6e-05 23.8 0.0 4.8e-05 23.0 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_5 PF01022.20 gi|257386991|ref|YP_003176764.1| - 0.00014 21.6 0.0 0.00025 20.8 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|257386991|ref|YP_003176764.1| - 0.00023 21.1 0.0 0.00061 19.8 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain Fe_dep_repress PF01325.19 gi|257386991|ref|YP_003176764.1| - 0.00069 19.8 0.0 0.0014 18.8 0.0 1.4 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.20 gi|257386991|ref|YP_003176764.1| - 0.00075 19.8 0.0 0.0014 18.9 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator HTH_DeoR PF08220.12 gi|257386991|ref|YP_003176764.1| - 0.0012 18.5 0.1 0.024 14.4 0.1 2.2 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_28 PF13518.6 gi|257386991|ref|YP_003176764.1| - 0.0013 18.8 0.0 0.003 17.6 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|257386991|ref|YP_003176764.1| - 0.0038 17.2 0.0 0.007 16.3 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR PF01047.22 gi|257386991|ref|YP_003176764.1| - 0.0091 15.9 0.0 0.017 15.0 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_23 PF13384.6 gi|257386991|ref|YP_003176764.1| - 0.013 15.2 0.0 0.027 14.3 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain Put_DNA-bind_N PF06971.13 gi|257386991|ref|YP_003176764.1| - 0.018 15.0 0.0 0.035 14.1 0.0 1.4 1 0 0 1 1 1 0 Putative DNA-binding protein N-terminus HTH_10 PF04967.12 gi|257386991|ref|YP_003176764.1| - 0.026 14.3 0.0 0.047 13.5 0.0 1.3 1 0 0 1 1 1 0 HTH DNA binding domain HTH_36 PF13730.6 gi|257386991|ref|YP_003176764.1| - 0.028 14.4 0.0 0.049 13.6 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|257386991|ref|YP_003176764.1| - 0.031 13.7 0.1 0.079 12.4 0.1 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 Sigma70_r4 PF04545.16 gi|257386991|ref|YP_003176764.1| - 0.038 13.5 0.0 0.058 12.9 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_Mga PF08280.11 gi|257386991|ref|YP_003176764.1| - 0.049 13.7 0.0 0.081 13.0 0.0 1.3 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_27 PF13463.6 gi|257386991|ref|YP_003176764.1| - 0.056 13.9 0.0 0.12 12.9 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_12 PF08461.10 gi|257386991|ref|YP_003176764.1| - 0.067 13.1 0.3 0.23 11.4 0.3 2.1 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_38 PF13936.6 gi|257386991|ref|YP_003176764.1| - 0.14 11.9 0.0 0.25 11.1 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Amidohydro_1 PF01979.20 gi|257386992|ref|YP_003176765.1| - 4.2e-32 111.8 0.2 1.5e-29 103.4 0.2 2.7 1 1 0 1 1 1 1 Amidohydrolase family A_deaminase PF00962.22 gi|257386992|ref|YP_003176765.1| - 1.8e-08 34.1 0.0 2.6e-08 33.6 0.0 1.1 1 0 0 1 1 1 1 Adenosine/AMP deaminase CheX PF13690.6 gi|257386992|ref|YP_003176765.1| - 0.0045 17.1 0.0 0.0092 16.1 0.0 1.5 1 0 0 1 1 1 1 Chemotaxis phosphatase CheX Proton_antipo_M PF00361.20 gi|257386993|ref|YP_003176766.1| - 1.2e-33 116.6 18.3 1.2e-33 116.6 18.3 1.6 1 1 1 2 2 2 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|257386993|ref|YP_003176766.1| - 1e-10 41.5 0.1 1e-10 41.5 0.1 2.5 3 0 0 3 3 3 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus OCIA PF07051.11 gi|257386993|ref|YP_003176766.1| - 0.29 11.2 1.0 4 7.6 0.1 2.8 3 0 0 3 3 3 0 Ovarian carcinoma immunoreactive antigen (OCIA) DUF2309 PF10070.9 gi|257386994|ref|YP_003176767.1| - 1.7e-264 879.8 0.0 1.9e-264 879.6 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2309) MoCF_biosynth PF00994.24 gi|257386995|ref|YP_003176768.1| - 1.6e-33 115.4 0.0 2.2e-33 114.9 0.0 1.1 1 0 0 1 1 1 1 Probable molybdopterin binding domain Lipase_GDSL_2 PF13472.6 gi|257386995|ref|YP_003176768.1| - 0.037 14.4 1.6 0.12 12.7 1.6 1.9 1 1 0 1 1 1 0 GDSL-like Lipase/Acylhydrolase family CCG PF02754.16 gi|257386996|ref|YP_003176769.1| - 1.4e-17 63.7 0.0 1.2e-12 47.9 0.0 2.4 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_10 PF13237.6 gi|257386996|ref|YP_003176769.1| - 3e-10 40.0 17.9 3.5e-09 36.7 8.3 2.7 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|257386996|ref|YP_003176769.1| - 1.4e-09 38.2 5.3 1.4e-09 38.2 5.3 2.0 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|257386996|ref|YP_003176769.1| - 4.3e-09 35.8 12.7 8.8e-05 22.2 1.4 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|257386996|ref|YP_003176769.1| - 1.3e-08 34.8 8.1 2.4e-08 34.0 6.2 2.3 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|257386996|ref|YP_003176769.1| - 9.8e-08 31.7 12.0 0.0001 22.2 1.6 2.7 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|257386996|ref|YP_003176769.1| - 3.2e-06 27.6 10.7 3.2e-06 27.6 10.7 2.2 2 1 0 2 2 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|257386996|ref|YP_003176769.1| - 1.1e-05 26.2 5.9 0.045 14.7 0.4 2.7 3 0 0 3 3 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|257386996|ref|YP_003176769.1| - 4.2e-05 23.6 10.5 0.02 15.0 1.1 2.9 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|257386996|ref|YP_003176769.1| - 0.00042 20.6 18.1 0.0041 17.5 0.9 2.9 3 0 0 3 3 2 2 4Fe-4S binding domain Nitrate_red_gam PF02665.14 gi|257386996|ref|YP_003176769.1| - 0.00046 19.8 0.6 0.00083 19.0 0.6 1.3 1 0 0 1 1 1 1 Nitrate reductase gamma subunit Fer4_6 PF12837.7 gi|257386996|ref|YP_003176769.1| - 0.00056 19.9 22.5 0.0011 18.9 3.7 2.9 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_22 PF17179.4 gi|257386996|ref|YP_003176769.1| - 0.0046 17.8 7.2 0.083 13.7 0.5 2.9 3 0 0 3 3 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|257386996|ref|YP_003176769.1| - 0.0049 17.4 12.4 0.0049 17.4 12.4 2.6 2 1 2 4 4 3 3 4Fe-4S dicluster domain Fer4_15 PF13459.6 gi|257386996|ref|YP_003176769.1| - 0.0095 16.7 5.0 0.24 12.1 0.4 3.1 2 0 0 2 2 2 1 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|257386996|ref|YP_003176769.1| - 0.084 13.4 14.3 0.73 10.4 2.4 2.9 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_18 PF13746.6 gi|257386996|ref|YP_003176769.1| - 3.2 8.0 10.5 2.6 8.3 2.0 2.6 1 1 0 2 2 2 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|257386996|ref|YP_003176769.1| - 3.7 8.7 23.8 1.2 10.3 3.7 2.9 3 0 0 3 3 2 0 4Fe-4S binding domain RNA_pol_Rpb6 PF01192.22 gi|257386997|ref|YP_003176770.1| - 0.0028 17.5 0.0 0.006 16.5 0.0 1.6 1 0 0 1 1 1 1 RNA polymerase Rpb6 HalOD1 PF18545.1 gi|257386998|ref|YP_003176771.1| - 9.1e-27 93.1 0.2 1.1e-26 92.9 0.2 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 Radical_SAM PF04055.21 gi|257386999|ref|YP_003176772.1| - 8.8e-06 26.2 1.0 0.00044 20.7 0.1 2.5 1 1 1 2 2 2 1 Radical SAM superfamily Fer4_14 PF13394.6 gi|257386999|ref|YP_003176772.1| - 0.0026 17.9 0.0 0.0045 17.1 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_12 PF13353.6 gi|257386999|ref|YP_003176772.1| - 0.14 12.4 0.0 0.28 11.4 0.0 1.5 1 0 0 1 1 1 0 4Fe-4S single cluster domain MFS_1 PF07690.16 gi|257387000|ref|YP_003176773.1| - 3.5e-48 164.3 72.5 5.6e-44 150.5 53.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|257387000|ref|YP_003176773.1| - 1.3e-06 27.5 6.4 1.3e-06 27.5 6.4 2.8 2 1 0 2 2 2 1 MFS_1 like family Ribonuc_L-PSP PF01042.21 gi|257387002|ref|YP_003176775.1| - 5.4e-41 139.4 0.1 6e-41 139.3 0.1 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP YtxH PF12732.7 gi|257387002|ref|YP_003176775.1| - 0.041 14.4 0.0 0.055 14.0 0.0 1.2 1 0 0 1 1 1 0 YtxH-like protein PTS-HPr PF00381.19 gi|257387002|ref|YP_003176775.1| - 0.083 13.1 0.0 7.9 6.8 0.0 2.2 2 0 0 2 2 2 0 PTS HPr component phosphorylation site adh_short_C2 PF13561.6 gi|257387003|ref|YP_003176776.1| - 4.1e-61 206.5 0.0 4.8e-61 206.3 0.0 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|257387003|ref|YP_003176776.1| - 3.2e-46 157.2 0.0 3.8e-46 157.0 0.0 1.0 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|257387003|ref|YP_003176776.1| - 5.8e-11 42.6 0.0 8e-11 42.2 0.0 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|257387003|ref|YP_003176776.1| - 0.00037 20.0 0.1 0.0011 18.5 0.0 1.7 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 gi|257387003|ref|YP_003176776.1| - 0.00053 19.9 0.1 0.00078 19.4 0.1 1.3 1 0 0 1 1 1 1 NAD(P)H-binding AtuA PF07287.11 gi|257387003|ref|YP_003176776.1| - 0.025 13.3 0.0 0.18 10.5 0.0 1.9 2 0 0 2 2 2 0 Acyclic terpene utilisation family protein AtuA 3HCDH_N PF02737.18 gi|257387003|ref|YP_003176776.1| - 0.16 11.8 0.0 0.3 11.0 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain MR_MLE_C PF13378.6 gi|257387004|ref|YP_003176777.1| - 3.5e-49 167.4 0.4 5.2e-49 166.8 0.4 1.3 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|257387004|ref|YP_003176777.1| - 3.2e-16 59.6 0.0 1.2e-15 57.7 0.0 2.0 2 0 0 2 2 2 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BPD_transp_1 PF00528.22 gi|257387005|ref|YP_003176778.1| - 5.1e-19 68.7 15.2 5.1e-19 68.7 15.2 2.2 1 1 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|257387006|ref|YP_003176779.1| - 4.3e-22 78.7 14.3 4.3e-22 78.7 14.3 1.6 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component FixQ PF05545.11 gi|257387006|ref|YP_003176779.1| - 6.4 6.8 9.7 0.73 9.8 0.4 3.0 3 0 0 3 3 3 0 Cbb3-type cytochrome oxidase component FixQ SBP_bac_1 PF01547.25 gi|257387007|ref|YP_003176780.1| - 1.6e-36 126.8 0.8 2.6e-36 126.2 0.8 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|257387007|ref|YP_003176780.1| - 1.7e-33 116.6 1.1 2.4e-33 116.1 1.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Creatininase PF02633.14 gi|257387008|ref|YP_003176781.1| - 7.2e-63 212.3 1.3 9e-63 212.0 1.3 1.0 1 0 0 1 1 1 1 Creatinine amidohydrolase ABC_tran PF00005.27 gi|257387009|ref|YP_003176782.1| - 5.8e-32 111.1 0.0 9.1e-32 110.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 gi|257387009|ref|YP_003176782.1| - 4.5e-12 46.0 0.1 1.5e-11 44.2 0.1 2.0 2 0 0 2 2 1 1 TOBE domain OB_MalK PF17912.1 gi|257387009|ref|YP_003176782.1| - 4.7e-09 36.9 0.1 3e-08 34.4 0.0 2.5 2 0 0 2 2 1 1 MalK OB fold domain AAA_21 PF13304.6 gi|257387009|ref|YP_003176782.1| - 3.1e-07 30.5 0.1 0.019 14.8 0.0 2.5 2 1 1 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system TOBE PF03459.17 gi|257387009|ref|YP_003176782.1| - 4.9e-07 29.9 0.0 1.3e-06 28.6 0.0 1.8 1 0 0 1 1 1 1 TOBE domain SMC_N PF02463.19 gi|257387009|ref|YP_003176782.1| - 0.00011 21.8 0.0 0.00018 21.0 0.0 1.3 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain Rad17 PF03215.15 gi|257387009|ref|YP_003176782.1| - 0.00082 19.3 0.0 0.001 19.0 0.0 1.2 1 0 0 1 1 1 1 Rad17 P-loop domain RsgA_GTPase PF03193.16 gi|257387009|ref|YP_003176782.1| - 0.0013 18.7 0.1 0.0027 17.6 0.0 1.5 2 0 0 2 2 1 1 RsgA GTPase AAA_22 PF13401.6 gi|257387009|ref|YP_003176782.1| - 0.0057 16.9 0.0 0.021 15.1 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA PF00004.29 gi|257387009|ref|YP_003176782.1| - 0.013 15.9 0.0 0.085 13.3 0.0 2.1 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 gi|257387009|ref|YP_003176782.1| - 0.021 15.0 0.1 0.048 13.8 0.1 1.7 1 1 0 1 1 1 0 AAA domain CysA_C_terminal PF17850.1 gi|257387009|ref|YP_003176782.1| - 0.023 15.2 0.2 0.13 12.8 0.1 2.4 2 0 0 2 2 2 0 CysA C-terminal regulatory domain G-alpha PF00503.20 gi|257387009|ref|YP_003176782.1| - 0.027 13.7 0.0 0.035 13.3 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit AAA_28 PF13521.6 gi|257387009|ref|YP_003176782.1| - 0.029 14.6 0.6 0.14 12.4 0.1 2.3 2 1 1 3 3 3 0 AAA domain AAA_16 PF13191.6 gi|257387009|ref|YP_003176782.1| - 0.029 14.7 0.2 0.061 13.7 0.2 1.7 1 1 0 1 1 1 0 AAA ATPase domain AAA_25 PF13481.6 gi|257387009|ref|YP_003176782.1| - 0.031 13.8 0.0 3.1 7.3 0.0 2.3 2 0 0 2 2 2 0 AAA domain AAA_23 PF13476.6 gi|257387009|ref|YP_003176782.1| - 0.032 14.7 0.2 0.068 13.7 0.2 1.7 1 1 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|257387009|ref|YP_003176782.1| - 0.081 12.6 0.0 0.83 9.3 0.0 2.0 1 1 0 2 2 2 0 AAA ATPase domain AAA_29 PF13555.6 gi|257387009|ref|YP_003176782.1| - 0.091 12.5 0.0 0.19 11.5 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|257387009|ref|YP_003176782.1| - 0.16 11.7 0.2 0.43 10.3 0.0 1.6 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|257387009|ref|YP_003176782.1| - 0.17 12.2 0.0 0.95 9.9 0.0 2.2 2 0 0 2 2 2 0 RNA helicase IclR PF01614.18 gi|257387010|ref|YP_003176783.1| - 1.7e-32 111.9 0.1 3.9e-32 110.8 0.1 1.6 1 0 0 1 1 1 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|257387010|ref|YP_003176783.1| - 1.9e-10 40.4 0.1 6.3e-10 38.7 0.0 1.9 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|257387010|ref|YP_003176783.1| - 3.4e-08 32.9 0.0 7.4e-08 31.8 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|257387010|ref|YP_003176783.1| - 1.1e-05 25.2 0.0 2.2e-05 24.2 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_45 PF14947.6 gi|257387010|ref|YP_003176783.1| - 7.8e-05 22.6 0.0 0.00014 21.8 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix MarR PF01047.22 gi|257387010|ref|YP_003176783.1| - 0.00017 21.4 0.0 0.00034 20.5 0.0 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|257387010|ref|YP_003176783.1| - 0.0011 18.8 0.0 0.004 17.0 0.0 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|257387010|ref|YP_003176783.1| - 0.0013 18.8 0.0 0.0031 17.5 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|257387010|ref|YP_003176783.1| - 0.009 15.9 0.0 0.02 14.7 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Penicillinase_R PF03965.16 gi|257387010|ref|YP_003176783.1| - 0.016 15.5 0.0 0.064 13.6 0.0 1.9 2 0 0 2 2 2 0 Penicillinase repressor HTH_38 PF13936.6 gi|257387010|ref|YP_003176783.1| - 0.16 11.8 0.0 0.93 9.3 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain DUF373 PF04123.13 gi|257387011|ref|YP_003176784.1| - 7.4e-117 390.5 10.2 8.4e-117 390.3 10.2 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) PEMT PF04191.13 gi|257387011|ref|YP_003176784.1| - 0.12 12.8 3.7 3.6 8.0 2.7 3.1 2 1 0 2 2 2 0 Phospholipid methyltransferase CD20 PF04103.15 gi|257387011|ref|YP_003176784.1| - 8.8 6.4 9.8 1.8 8.6 1.5 2.2 1 1 0 2 2 2 0 CD20-like family Zn-ribbon_8 PF09723.10 gi|257387013|ref|YP_003176786.1| - 0.0019 18.3 1.0 0.0028 17.7 1.0 1.3 1 0 0 1 1 1 1 Zinc ribbon domain zf-C3HC4_3 PF13920.6 gi|257387013|ref|YP_003176786.1| - 0.0038 17.0 0.1 0.0046 16.8 0.1 1.1 1 0 0 1 1 1 1 Zinc finger, C3HC4 type (RING finger) Cys_rich_CPCC PF14206.6 gi|257387013|ref|YP_003176786.1| - 0.0072 16.1 0.8 0.0072 16.1 0.8 1.1 1 0 0 1 1 1 1 Cysteine-rich CPCC DZR PF12773.7 gi|257387013|ref|YP_003176786.1| - 0.0085 16.1 0.4 0.01 15.8 0.4 1.2 1 0 0 1 1 1 1 Double zinc ribbon Auto_anti-p27 PF06677.12 gi|257387013|ref|YP_003176786.1| - 0.01 16.0 2.4 0.014 15.5 2.4 1.2 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) RNHCP PF12647.7 gi|257387013|ref|YP_003176786.1| - 0.041 13.8 0.1 0.041 13.8 0.1 1.1 1 0 0 1 1 1 0 RNHCP domain C1_2 PF03107.16 gi|257387013|ref|YP_003176786.1| - 0.12 12.8 0.9 10 6.6 0.1 2.1 1 1 1 2 2 2 0 C1 domain zf_UBZ PF18439.1 gi|257387013|ref|YP_003176786.1| - 0.16 11.6 1.1 0.59 9.8 0.1 2.0 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger Rubredoxin_2 PF18073.1 gi|257387013|ref|YP_003176786.1| - 0.16 11.7 1.9 1.1 9.0 0.1 2.1 2 0 0 2 2 2 0 Rubredoxin metal binding domain ADK_lid PF05191.14 gi|257387013|ref|YP_003176786.1| - 0.19 11.8 0.9 0.19 11.8 0.9 2.1 1 1 1 2 2 2 0 Adenylate kinase, active site lid zinc_ribbon_9 PF14369.6 gi|257387013|ref|YP_003176786.1| - 0.29 11.4 3.2 0.56 10.5 3.2 1.5 1 1 0 1 1 1 0 zinc-ribbon TF_Zn_Ribbon PF08271.12 gi|257387013|ref|YP_003176786.1| - 0.63 9.6 7.3 0.19 11.2 0.9 2.3 1 1 1 2 2 2 0 TFIIB zinc-binding DUF1424 PF07232.11 gi|257387015|ref|YP_003176788.1| - 3.4e-15 55.9 2.9 8e-15 54.6 2.9 1.6 1 0 0 1 1 1 1 Putative rep protein (DUF1424) YugN PF08868.10 gi|257387015|ref|YP_003176788.1| - 0.11 12.4 0.1 0.25 11.3 0.1 1.5 1 0 0 1 1 1 0 YugN-like family Legionella_OMP PF05150.12 gi|257387018|ref|YP_003176791.1| - 0.022 13.7 0.0 0.025 13.5 0.0 1.1 1 0 0 1 1 1 0 Legionella pneumophila major outer membrane protein precursor Lipase PF00151.19 gi|257387018|ref|YP_003176791.1| - 0.11 11.7 0.0 0.15 11.3 0.0 1.1 1 0 0 1 1 1 0 Lipase DUF1859 PF08948.10 gi|257387019|ref|YP_003176792.1| - 0.021 14.8 0.5 6.9 6.6 0.0 3.0 2 0 0 2 2 2 0 Domain of unknown function (DUF1859) DUF4510 PF14971.6 gi|257387019|ref|YP_003176792.1| - 0.046 14.1 0.7 4.2 7.7 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4510) DUF4482 PF14818.6 gi|257387019|ref|YP_003176792.1| - 0.44 11.4 2.1 3.2 8.6 1.4 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4482) Trypsin_2 PF13365.6 gi|257387024|ref|YP_003176797.1| - 4.1e-14 53.7 0.0 5.8e-14 53.2 0.0 1.2 1 0 0 1 1 1 1 Trypsin-like peptidase domain DUF951 PF06107.11 gi|257387025|ref|YP_003176798.1| - 0.016 15.1 0.1 0.026 14.4 0.0 1.5 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF951) Styelin PF17562.2 gi|257387027|ref|YP_003176800.1| - 1.3 9.5 5.1 1.6 9.2 3.2 1.9 1 1 0 2 2 2 0 Styelin RHH_1 PF01402.21 gi|257387027|ref|YP_003176800.1| - 1.9 8.6 8.8 3.9 7.6 2.4 3.1 1 1 1 2 2 2 0 Ribbon-helix-helix protein, copG family Phage_integrase PF00589.22 gi|257387028|ref|YP_003176801.1| - 1.4e-08 34.7 0.0 5.6e-08 32.8 0.0 1.9 1 1 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.17 gi|257387028|ref|YP_003176801.1| - 1.6e-07 31.6 0.0 5.5e-07 29.8 0.0 1.9 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 gi|257387028|ref|YP_003176801.1| - 0.00015 22.1 0.0 0.00048 20.6 0.0 1.9 1 1 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 gi|257387028|ref|YP_003176801.1| - 0.0026 18.0 0.0 0.011 16.1 0.0 2.0 2 0 0 2 2 2 1 Phage integrase SAM-like domain DUF2391 PF09622.10 gi|257387029|ref|YP_003176802.1| - 0.0059 16.0 1.7 0.0061 15.9 1.7 1.0 1 0 0 1 1 1 1 Putative integral membrane protein (DUF2391) Adeno_E3_CR2 PF02439.15 gi|257387029|ref|YP_003176802.1| - 1.6 8.5 6.0 1.9 8.3 0.3 2.1 2 0 0 2 2 2 0 Adenovirus E3 region protein CR2 DUF2207 PF09972.9 gi|257387030|ref|YP_003176803.1| - 0.077 11.8 0.0 0.095 11.5 0.0 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) MtrF PF09472.10 gi|257387030|ref|YP_003176803.1| - 0.84 9.1 4.1 2.1 7.8 4.1 1.6 1 0 0 1 1 1 0 Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF) TrkA_N PF02254.18 gi|257387031|ref|YP_003176804.1| - 6.6e-42 142.4 10.4 6.4e-22 78.0 1.1 3.7 3 2 1 4 4 4 2 TrkA-N domain TrkA_C PF02080.21 gi|257387031|ref|YP_003176804.1| - 1.2e-27 95.5 1.2 3.4e-13 49.2 0.4 2.6 2 0 0 2 2 2 2 TrkA-C domain FAD_binding_3 PF01494.19 gi|257387031|ref|YP_003176804.1| - 5e-06 26.0 0.6 0.046 13.0 0.1 2.2 2 0 0 2 2 2 2 FAD binding domain NAD_binding_2 PF03446.15 gi|257387031|ref|YP_003176804.1| - 0.01 16.0 0.1 0.53 10.4 0.0 3.3 3 1 1 4 4 4 0 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|257387031|ref|YP_003176804.1| - 0.015 14.7 0.0 0.027 13.8 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|257387031|ref|YP_003176804.1| - 0.017 15.5 3.3 0.028 14.9 1.1 2.6 2 1 0 2 2 2 0 Putative NAD(P)-binding NAD_binding_8 PF13450.6 gi|257387031|ref|YP_003176804.1| - 0.029 14.6 0.0 0.2 11.9 0.0 2.4 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain AdoHcyase_NAD PF00670.21 gi|257387031|ref|YP_003176804.1| - 0.05 13.7 0.0 0.32 11.0 0.0 2.2 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain XdhC_C PF13478.6 gi|257387031|ref|YP_003176804.1| - 0.058 13.9 0.7 0.16 12.4 0.1 2.1 2 0 0 2 2 2 0 XdhC Rossmann domain DAO PF01266.24 gi|257387031|ref|YP_003176804.1| - 0.059 12.9 5.2 6.3 6.3 3.8 2.9 2 1 0 2 2 2 0 FAD dependent oxidoreductase Ion_trans_2 PF07885.16 gi|257387031|ref|YP_003176804.1| - 0.092 12.7 2.9 0.26 11.3 2.9 1.8 1 0 0 1 1 1 0 Ion channel AlaDh_PNT_C PF01262.21 gi|257387031|ref|YP_003176804.1| - 0.12 11.6 3.7 0.33 10.2 3.7 1.7 1 1 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain ThiF PF00899.21 gi|257387031|ref|YP_003176804.1| - 0.13 11.6 1.0 1.2 8.4 0.9 2.3 1 1 0 1 1 1 0 ThiF family DUF5428 PF17493.2 gi|257387031|ref|YP_003176804.1| - 0.13 12.7 0.4 8.2 6.9 0.0 2.6 2 0 0 2 2 2 0 Family of unknown function (DUF5428) DUF2157 PF09925.9 gi|257387032|ref|YP_003176805.1| - 0.018 14.8 4.5 0.024 14.4 4.5 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2157) YrhK PF14145.6 gi|257387032|ref|YP_003176805.1| - 0.029 14.2 1.9 0.041 13.8 0.2 2.0 2 1 0 2 2 2 0 YrhK-like protein SUR7 PF06687.12 gi|257387032|ref|YP_003176805.1| - 0.088 12.4 3.5 0.11 12.1 3.5 1.1 1 0 0 1 1 1 0 SUR7/PalI family Cpn60_TCP1 PF00118.24 gi|257387034|ref|YP_003176807.1| - 6.8e-165 549.4 13.7 7.7e-165 549.2 13.7 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family DUF1917 PF08939.10 gi|257387035|ref|YP_003176808.1| - 2.1e-09 37.7 0.0 2.6e-09 37.4 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1917) DUF2061 PF09834.9 gi|257387037|ref|YP_003176810.1| - 4.7e-17 62.2 2.8 5.5e-17 62.0 2.8 1.1 1 0 0 1 1 1 1 Predicted membrane protein (DUF2061) Fumarate_red_D PF02313.17 gi|257387038|ref|YP_003176811.1| - 0.066 13.3 4.9 0.11 12.6 4.9 1.4 1 0 0 1 1 1 0 Fumarate reductase subunit D DUF2568 PF10823.8 gi|257387039|ref|YP_003176812.1| - 0.31 11.3 5.3 0.56 10.5 5.4 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF2568) Usp PF00582.26 gi|257387040|ref|YP_003176813.1| - 4.9e-17 62.7 0.2 4.1e-16 59.8 0.2 2.0 1 1 0 1 1 1 1 Universal stress protein family TF_Zn_Ribbon PF08271.12 gi|257387040|ref|YP_003176813.1| - 0.0019 17.6 2.0 0.0035 16.8 2.0 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding HypA PF01155.19 gi|257387040|ref|YP_003176813.1| - 0.021 14.9 0.2 0.033 14.2 0.2 1.4 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Ribosomal_L37ae PF01780.19 gi|257387040|ref|YP_003176813.1| - 0.029 14.5 0.1 0.046 13.8 0.1 1.2 1 0 0 1 1 1 0 Ribosomal L37ae protein family zf-RING_7 PF02591.15 gi|257387040|ref|YP_003176813.1| - 0.29 11.4 1.8 18 5.6 0.1 2.5 2 0 0 2 2 2 0 C4-type zinc ribbon domain Zn_ribbon_SprT PF17283.2 gi|257387040|ref|YP_003176813.1| - 0.41 10.6 3.6 0.83 9.6 3.6 1.5 1 1 0 1 1 1 0 SprT-like zinc ribbon domain zf-ribbon_3 PF13248.6 gi|257387040|ref|YP_003176813.1| - 0.62 9.6 3.8 2.2 7.8 0.6 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|257387040|ref|YP_003176813.1| - 1.3 9.2 6.1 11 6.3 0.9 2.4 1 1 1 2 2 2 0 Zinc ribbon domain OCD_Mu_crystall PF02423.15 gi|257387041|ref|YP_003176814.1| - 1e-88 297.4 0.2 1.1e-88 297.2 0.2 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Peptidase_S24 PF00717.23 gi|257387043|ref|YP_003176816.1| - 7.1e-06 25.9 0.0 1.5e-05 24.9 0.0 1.5 1 0 0 1 1 1 1 Peptidase S24-like Pyrophosphatase PF00719.19 gi|257387043|ref|YP_003176816.1| - 0.25 11.2 0.1 0.39 10.5 0.1 1.3 1 0 0 1 1 1 0 Inorganic pyrophosphatase AhpC-TSA PF00578.21 gi|257387044|ref|YP_003176817.1| - 1.4e-23 83.2 0.0 1.6e-23 83.0 0.0 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|257387044|ref|YP_003176817.1| - 1.2e-09 38.1 0.0 1.4e-09 37.8 0.0 1.1 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.6 gi|257387044|ref|YP_003176817.1| - 0.00015 21.9 0.0 0.00018 21.6 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA antioxidant enzyme HSP20 PF00011.21 gi|257387045|ref|YP_003176818.1| - 3.8e-14 52.7 0.0 4.4e-14 52.5 0.0 1.1 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|257387045|ref|YP_003176818.1| - 3.2e-11 42.6 0.1 4.3e-11 42.2 0.1 1.2 1 0 0 1 1 1 1 HSP20-like domain found in ArsA GvpH PF05455.11 gi|257387045|ref|YP_003176818.1| - 4.9e-06 26.7 2.3 7.7e-06 26.1 2.3 1.3 1 0 0 1 1 1 1 GvpH PDT PF00800.18 gi|257387046|ref|YP_003176819.1| - 1.8e-45 155.0 0.0 2.5e-45 154.5 0.0 1.1 1 0 0 1 1 1 1 Prephenate dehydratase ACT PF01842.25 gi|257387046|ref|YP_003176819.1| - 1.1e-07 31.5 0.0 2.7e-07 30.3 0.0 1.7 1 0 0 1 1 1 1 ACT domain ATP1G1_PLM_MAT8 PF02038.16 gi|257387047|ref|YP_003176820.1| - 0.12 11.8 0.0 0.36 10.3 0.0 1.8 1 0 0 1 1 1 0 ATP1G1/PLM/MAT8 family Pyr_redox_2 PF07992.14 gi|257387048|ref|YP_003176821.1| - 2.7e-65 220.5 4.3 2.7e-65 220.5 4.3 1.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|257387048|ref|YP_003176821.1| - 1.6e-37 128.1 2.3 3.7e-37 127.0 1.2 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 gi|257387048|ref|YP_003176821.1| - 3.6e-22 78.7 7.3 3.5e-19 69.1 0.2 3.0 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|257387048|ref|YP_003176821.1| - 3.6e-09 36.3 0.3 9.8e-05 21.8 0.0 2.1 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|257387048|ref|YP_003176821.1| - 4.9e-08 32.5 3.3 1.9e-06 27.2 2.8 2.7 2 1 0 2 2 2 1 Glucose inhibited division protein A FAD_oxidored PF12831.7 gi|257387048|ref|YP_003176821.1| - 6.3e-07 29.1 2.1 1e-06 28.4 2.1 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|257387048|ref|YP_003176821.1| - 4.2e-06 26.2 7.8 0.0024 17.2 1.0 3.3 2 1 1 3 3 3 2 FAD binding domain HI0933_like PF03486.14 gi|257387048|ref|YP_003176821.1| - 5.9e-06 25.2 0.6 0.011 14.4 0.2 3.3 3 0 0 3 3 3 1 HI0933-like protein NAD_binding_8 PF13450.6 gi|257387048|ref|YP_003176821.1| - 1.4e-05 25.2 3.7 0.0044 17.2 1.5 2.7 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|257387048|ref|YP_003176821.1| - 8.2e-05 21.9 9.3 0.00021 20.5 1.9 3.5 4 0 0 4 4 4 1 FAD binding domain AlaDh_PNT_C PF01262.21 gi|257387048|ref|YP_003176821.1| - 0.0001 21.7 4.1 1 8.6 0.0 3.3 3 0 0 3 3 3 2 Alanine dehydrogenase/PNT, C-terminal domain UDPG_MGDP_dh_N PF03721.14 gi|257387048|ref|YP_003176821.1| - 0.00054 19.6 0.6 0.0028 17.3 0.0 2.1 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain XdhC_C PF13478.6 gi|257387048|ref|YP_003176821.1| - 0.0023 18.4 1.0 0.15 12.6 0.2 2.9 2 1 0 2 2 2 1 XdhC Rossmann domain NAD_binding_7 PF13241.6 gi|257387048|ref|YP_003176821.1| - 0.0066 16.9 0.4 1.2 9.6 0.0 2.6 2 0 0 2 2 2 1 Putative NAD(P)-binding DAO PF01266.24 gi|257387048|ref|YP_003176821.1| - 0.0073 15.9 16.0 1.7 8.1 3.6 4.1 3 1 1 4 4 4 2 FAD dependent oxidoreductase 3HCDH_N PF02737.18 gi|257387048|ref|YP_003176821.1| - 0.017 15.0 0.0 0.017 15.0 0.0 2.5 3 0 0 3 3 3 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain TetR_C_20 PF17925.1 gi|257387048|ref|YP_003176821.1| - 0.065 13.6 3.2 0.61 10.4 0.1 2.5 2 0 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain Trp_halogenase PF04820.14 gi|257387048|ref|YP_003176821.1| - 0.1 11.5 0.2 0.28 10.0 0.2 1.8 1 0 0 1 1 1 0 Tryptophan halogenase Abhydrolase_6 PF12697.7 gi|257387049|ref|YP_003176822.1| - 2.9e-24 86.9 11.5 3.4e-24 86.7 11.5 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|257387049|ref|YP_003176822.1| - 3e-19 69.7 0.1 4.4e-13 49.5 0.1 2.1 2 0 0 2 2 2 2 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|257387049|ref|YP_003176822.1| - 1.5e-14 53.9 0.3 2.7e-13 49.7 0.3 2.1 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_4 PF08386.10 gi|257387049|ref|YP_003176822.1| - 1.3e-05 25.2 0.0 3e-05 24.1 0.0 1.6 1 0 0 1 1 1 1 TAP-like protein Abhydrolase_2 PF02230.16 gi|257387049|ref|YP_003176822.1| - 0.0048 16.7 0.1 0.17 11.6 0.0 2.8 3 0 0 3 3 3 1 Phospholipase/Carboxylesterase Abhydrolase_5 PF12695.7 gi|257387049|ref|YP_003176822.1| - 0.021 14.6 0.0 4.9 6.9 0.0 2.2 2 0 0 2 2 2 0 Alpha/beta hydrolase family Ndr PF03096.14 gi|257387049|ref|YP_003176822.1| - 0.024 13.3 0.0 2.1 6.9 0.0 2.0 2 0 0 2 2 2 0 Ndr family Esterase PF00756.20 gi|257387049|ref|YP_003176822.1| - 0.026 14.1 0.0 0.037 13.7 0.0 1.3 1 0 0 1 1 1 0 Putative esterase Peptidase_S15 PF02129.18 gi|257387049|ref|YP_003176822.1| - 0.055 13.1 0.0 0.073 12.6 0.0 1.1 1 0 0 1 1 1 0 X-Pro dipeptidyl-peptidase (S15 family) MaoC_dehydratas PF01575.19 gi|257387050|ref|YP_003176823.1| - 3.2e-22 78.4 0.0 5.2e-22 77.7 0.0 1.3 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 gi|257387050|ref|YP_003176823.1| - 1.3e-09 38.2 0.0 3.4e-09 36.9 0.0 1.7 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase 4HBT PF03061.22 gi|257387050|ref|YP_003176823.1| - 0.066 13.6 0.0 0.13 12.6 0.0 1.7 1 0 0 1 1 1 0 Thioesterase superfamily AbrB-like PF14250.6 gi|257387051|ref|YP_003176824.1| - 0.028 14.5 0.0 0.037 14.1 0.0 1.3 1 0 0 1 1 1 0 AbrB-like transcriptional regulator PhnI PF05861.12 gi|257387051|ref|YP_003176824.1| - 0.058 12.2 0.2 0.068 12.0 0.2 1.0 1 0 0 1 1 1 0 Bacterial phosphonate metabolism protein (PhnI) MazE_antitoxin PF04014.18 gi|257387051|ref|YP_003176824.1| - 0.11 12.4 0.3 0.18 11.8 0.3 1.3 1 0 0 1 1 1 0 Antidote-toxin recognition MazE, bacterial antitoxin Filament PF00038.21 gi|257387052|ref|YP_003176825.1| - 1.9e-05 24.4 14.3 2.6e-05 24.0 14.3 1.1 1 0 0 1 1 1 1 Intermediate filament protein DUF3584 PF12128.8 gi|257387052|ref|YP_003176825.1| - 0.00011 20.0 5.3 0.00011 20.0 5.3 1.9 1 1 1 2 2 2 2 Protein of unknown function (DUF3584) Apolipoprotein PF01442.18 gi|257387052|ref|YP_003176825.1| - 0.00012 22.1 18.5 0.0049 16.8 4.3 2.4 1 1 1 2 2 2 2 Apolipoprotein A1/A4/E domain FlxA PF14282.6 gi|257387052|ref|YP_003176825.1| - 0.00028 20.8 2.7 0.00028 20.8 2.7 2.2 2 0 0 2 2 2 1 FlxA-like protein MCPsignal PF00015.21 gi|257387052|ref|YP_003176825.1| - 0.00092 19.1 9.2 0.038 13.8 1.2 2.2 1 1 1 2 2 2 2 Methyl-accepting chemotaxis protein (MCP) signalling domain Cauli_AT PF03233.13 gi|257387052|ref|YP_003176825.1| - 0.0015 18.5 1.4 0.003 17.5 0.1 1.9 1 1 0 2 2 2 1 Aphid transmission protein NPV_P10 PF05531.12 gi|257387052|ref|YP_003176825.1| - 0.0058 17.1 10.5 0.021 15.3 5.9 2.8 2 1 0 2 2 2 1 Nucleopolyhedrovirus P10 protein ApoLp-III PF07464.11 gi|257387052|ref|YP_003176825.1| - 0.011 15.8 14.1 0.11 12.5 5.9 2.3 1 1 1 2 2 2 0 Apolipophorin-III precursor (apoLp-III) PhaP_Bmeg PF09602.10 gi|257387052|ref|YP_003176825.1| - 0.012 15.5 13.6 0.41 10.6 13.6 2.5 1 1 0 1 1 1 0 Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg) DUF4795 PF16043.5 gi|257387052|ref|YP_003176825.1| - 0.015 14.9 7.1 1.3 8.5 3.2 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4795) ApoO PF09769.9 gi|257387052|ref|YP_003176825.1| - 0.015 15.2 4.3 0.27 11.2 0.1 2.9 2 1 1 3 3 3 0 Apolipoprotein O DHC_N1 PF08385.12 gi|257387052|ref|YP_003176825.1| - 0.023 13.4 3.1 0.028 13.1 3.1 1.2 1 0 0 1 1 1 0 Dynein heavy chain, N-terminal region 1 FlaC_arch PF05377.11 gi|257387052|ref|YP_003176825.1| - 0.04 14.3 10.2 0.58 10.6 2.0 4.0 1 1 2 4 4 4 0 Flagella accessory protein C (FlaC) DUF1664 PF07889.12 gi|257387052|ref|YP_003176825.1| - 0.071 13.1 9.8 1.3 9.1 4.1 2.7 1 1 2 3 3 3 0 Protein of unknown function (DUF1664) Baculo_PEP_C PF04513.12 gi|257387052|ref|YP_003176825.1| - 0.082 12.9 6.0 2.6 8.1 1.1 2.3 1 1 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF883 PF05957.13 gi|257387052|ref|YP_003176825.1| - 0.091 13.4 9.9 0.26 11.9 4.5 2.8 1 1 2 3 3 3 0 Bacterial protein of unknown function (DUF883) Laminin_II PF06009.12 gi|257387052|ref|YP_003176825.1| - 0.12 12.4 7.2 0.34 10.9 3.2 2.7 1 1 1 2 2 2 0 Laminin Domain II CdvA PF18822.1 gi|257387052|ref|YP_003176825.1| - 0.13 12.0 9.3 1 9.2 0.9 3.1 1 1 2 3 3 3 0 CdvA-like coiled-coil domain YtxH PF12732.7 gi|257387052|ref|YP_003176825.1| - 0.15 12.6 9.3 49 4.5 9.3 3.3 1 1 0 1 1 1 0 YtxH-like protein DUF948 PF06103.11 gi|257387052|ref|YP_003176825.1| - 0.24 11.7 8.6 0.71 10.2 4.0 3.0 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF948) Prominin PF05478.11 gi|257387052|ref|YP_003176825.1| - 0.26 9.2 6.8 0.059 11.3 0.9 1.6 1 1 0 1 1 1 0 Prominin Snapin_Pallidin PF14712.6 gi|257387052|ref|YP_003176825.1| - 0.28 11.6 8.9 3.7 8.0 0.5 3.0 2 1 1 3 3 3 0 Snapin/Pallidin Phage_GP20 PF06810.11 gi|257387052|ref|YP_003176825.1| - 0.33 10.7 13.3 0.27 11.1 6.1 3.3 1 1 0 2 2 2 0 Phage minor structural protein GP20 DUF5069 PF16798.5 gi|257387052|ref|YP_003176825.1| - 0.39 10.9 4.6 0.47 10.7 1.8 2.2 1 1 0 2 2 2 0 Domain of unknown function (DUF5069) Tweety PF04906.13 gi|257387052|ref|YP_003176825.1| - 0.4 9.3 2.9 1.9 7.0 0.1 2.2 1 1 1 2 2 2 0 Tweety DUF4407 PF14362.6 gi|257387052|ref|YP_003176825.1| - 0.42 9.9 6.8 1 8.6 6.8 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) Sec34 PF04136.15 gi|257387052|ref|YP_003176825.1| - 0.55 10.1 6.1 0.19 11.6 0.7 2.7 1 1 0 2 2 2 0 Sec34-like family Spc7 PF08317.11 gi|257387052|ref|YP_003176825.1| - 0.94 8.3 14.6 0.03 13.2 7.5 1.8 1 1 1 2 2 2 0 Spc7 kinetochore protein Dynactin_p22 PF07426.11 gi|257387052|ref|YP_003176825.1| - 1 9.2 9.0 1.1 9.1 6.5 2.4 1 1 0 1 1 1 0 Dynactin subunit p22 Phasin_2 PF09361.10 gi|257387052|ref|YP_003176825.1| - 1.1 9.5 17.2 0.74 10.1 6.5 2.5 1 1 1 2 2 2 0 Phasin protein FliD_N PF02465.18 gi|257387052|ref|YP_003176825.1| - 1.2 9.8 6.4 3.9 8.2 0.9 2.3 2 0 0 2 2 2 0 Flagellar hook-associated protein 2 N-terminus LPP PF04728.13 gi|257387052|ref|YP_003176825.1| - 1.7 9.1 8.1 1 9.8 3.5 2.6 1 1 1 2 2 2 0 Lipoprotein leucine-zipper Cnn_1N PF07989.11 gi|257387052|ref|YP_003176825.1| - 2.7 8.2 10.2 7.2 6.8 4.8 2.7 2 1 0 2 2 2 0 Centrosomin N-terminal motif 1 UPF0242 PF06785.11 gi|257387052|ref|YP_003176825.1| - 3.8 7.6 15.8 2 8.5 9.6 2.0 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus TMPIT PF07851.13 gi|257387052|ref|YP_003176825.1| - 3.9 6.6 7.9 1.2 8.3 1.2 2.0 1 1 1 2 2 2 0 TMPIT-like protein DUF1993 PF09351.10 gi|257387052|ref|YP_003176825.1| - 4.7 7.3 9.1 7.4 6.7 1.3 2.8 1 1 1 2 2 2 0 Domain of unknown function (DUF1993) TPR_MLP1_2 PF07926.12 gi|257387052|ref|YP_003176825.1| - 5.7 7.0 20.5 1.1 9.4 10.7 2.8 2 2 0 2 2 2 0 TPR/MLP1/MLP2-like protein Sas10_Utp3 PF04000.15 gi|257387052|ref|YP_003176825.1| - 9.9 6.9 7.6 2.9 8.6 0.3 2.9 3 1 0 3 3 3 0 Sas10/Utp3/C1D family PHA_synth_III_E PF09712.10 gi|257387053|ref|YP_003176826.1| - 2.4e-12 46.6 13.3 6.1e-11 42.0 1.3 2.1 1 1 1 2 2 2 2 Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E) PLU-1 PF08429.11 gi|257387053|ref|YP_003176826.1| - 0.0091 15.2 0.7 0.0091 15.2 0.7 1.8 2 0 0 2 2 2 1 PLU-1-like protein Phasin PF05597.11 gi|257387053|ref|YP_003176826.1| - 0.0098 15.9 1.4 0.0098 15.9 1.4 2.5 1 1 1 2 2 2 1 Poly(hydroxyalcanoate) granule associated protein (phasin) Phasin_2 PF09361.10 gi|257387053|ref|YP_003176826.1| - 0.021 15.1 10.3 0.5 10.7 1.0 3.0 2 1 1 3 3 3 0 Phasin protein Jnk-SapK_ap_N PF09744.9 gi|257387053|ref|YP_003176826.1| - 0.058 13.6 9.7 0.61 10.3 1.0 2.1 2 0 0 2 2 2 0 JNK_SAPK-associated protein-1 DUF948 PF06103.11 gi|257387053|ref|YP_003176826.1| - 0.062 13.6 4.8 3.2 8.1 0.1 2.8 2 1 1 3 3 3 0 Bacterial protein of unknown function (DUF948) BMFP PF04380.13 gi|257387053|ref|YP_003176826.1| - 0.098 13.1 11.5 0.073 13.6 3.4 2.6 2 1 1 3 3 3 0 Membrane fusogenic activity Lant_dehydr_C PF14028.6 gi|257387053|ref|YP_003176826.1| - 0.19 11.3 8.1 0.2 11.2 2.5 2.0 1 1 1 2 2 2 0 Lantibiotic biosynthesis dehydratase C-term Glyco_hydro_67C PF07477.12 gi|257387053|ref|YP_003176826.1| - 0.24 10.9 5.6 0.11 12.1 2.6 1.9 2 1 0 2 2 2 0 Glycosyl hydrolase family 67 C-terminus FliD_C PF07195.12 gi|257387053|ref|YP_003176826.1| - 0.24 10.8 4.8 0.34 10.3 0.1 2.1 1 1 0 2 2 2 0 Flagellar hook-associated protein 2 C-terminus DUF4083 PF13314.6 gi|257387053|ref|YP_003176826.1| - 0.33 10.9 0.6 0.56 10.2 0.6 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4083) BAR_3 PF16746.5 gi|257387053|ref|YP_003176826.1| - 0.56 9.9 4.9 9.7 5.8 0.5 2.6 2 1 0 2 2 2 0 BAR domain of APPL family WXG100 PF06013.12 gi|257387053|ref|YP_003176826.1| - 2 8.7 18.4 5.9 7.2 1.3 3.9 3 1 1 4 4 4 0 Proteins of 100 residues with WXG DUF3486 PF11985.8 gi|257387053|ref|YP_003176826.1| - 3.9 7.8 10.8 0.3 11.5 3.0 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF3486) Abhydrolase_1 PF00561.20 gi|257387054|ref|YP_003176827.1| - 3.8e-19 69.3 0.0 6.1e-19 68.7 0.0 1.3 1 0 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|257387054|ref|YP_003176827.1| - 1.4e-09 37.6 0.0 0.00018 20.8 0.0 2.5 2 0 0 2 2 2 2 Serine aminopeptidase, S33 HHH_5 PF14520.6 gi|257387054|ref|YP_003176827.1| - 7.7e-09 36.0 0.0 1.5e-08 35.1 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix domain PhaC_N PF07167.13 gi|257387054|ref|YP_003176827.1| - 1.5e-07 31.2 0.0 2.6e-07 30.4 0.0 1.4 1 0 0 1 1 1 1 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus DUF3141 PF11339.8 gi|257387054|ref|YP_003176827.1| - 1.9e-05 23.3 0.0 0.0078 14.7 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF3141) DLH PF01738.18 gi|257387054|ref|YP_003176827.1| - 2.9e-05 23.7 0.0 0.0061 16.1 0.0 2.4 2 0 0 2 2 2 1 Dienelactone hydrolase family DUF4332 PF14229.6 gi|257387054|ref|YP_003176827.1| - 0.00043 20.5 0.0 0.00085 19.6 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4332) PHB_depo_C PF06850.11 gi|257387054|ref|YP_003176827.1| - 0.00052 19.5 0.0 0.00099 18.6 0.0 1.5 1 0 0 1 1 1 1 PHB de-polymerase C-terminus Cdd1 PF11731.8 gi|257387054|ref|YP_003176827.1| - 0.00079 19.6 0.0 0.0018 18.4 0.0 1.6 1 0 0 1 1 1 1 Pathogenicity locus FSH1 PF03959.13 gi|257387054|ref|YP_003176827.1| - 0.0062 16.2 0.0 0.12 12.0 0.0 2.1 2 0 0 2 2 2 1 Serine hydrolase (FSH1) DNA_pol_lambd_f PF10391.9 gi|257387054|ref|YP_003176827.1| - 0.0091 15.8 0.0 0.024 14.5 0.0 1.7 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda BAF PF02961.14 gi|257387054|ref|YP_003176827.1| - 0.12 12.9 0.0 0.31 11.5 0.0 1.7 1 0 0 1 1 1 0 Barrier to autointegration factor HTH_28 PF13518.6 gi|257387054|ref|YP_003176827.1| - 0.18 11.9 0.0 0.45 10.7 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain DUF3235 PF11574.8 gi|257387054|ref|YP_003176827.1| - 2.8 8.9 4.8 13 6.8 1.8 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF3235) adh_short_C2 PF13561.6 gi|257387055|ref|YP_003176828.1| - 1.5e-62 211.2 2.4 1.8e-62 211.0 2.4 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|257387055|ref|YP_003176828.1| - 1.1e-55 188.2 1.8 1.3e-55 187.9 1.8 1.0 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|257387055|ref|YP_003176828.1| - 7.1e-24 84.7 0.7 8.8e-24 84.4 0.7 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|257387055|ref|YP_003176828.1| - 0.0024 17.4 0.6 0.0033 16.9 0.6 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3HCDH_N PF02737.18 gi|257387055|ref|YP_003176828.1| - 0.036 14.0 0.3 0.064 13.1 0.3 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DNA_primase_lrg PF04104.14 gi|257387056|ref|YP_003176829.1| - 1e-35 123.4 0.0 1.8e-35 122.7 0.0 1.3 1 0 0 1 1 1 1 Eukaryotic and archaeal DNA primase, large subunit Sun2_CC2 PF18580.1 gi|257387056|ref|YP_003176829.1| - 0.036 14.3 0.1 0.1 12.8 0.1 1.8 1 0 0 1 1 1 0 SUN2 coiled coil domain 2 CopD PF05425.13 gi|257387057|ref|YP_003176830.1| - 0.011 16.1 6.1 0.014 15.8 6.1 1.0 1 0 0 1 1 1 0 Copper resistance protein D pP_pnuc_2 PF18166.1 gi|257387057|ref|YP_003176830.1| - 0.026 14.6 0.0 0.032 14.3 0.0 1.1 1 0 0 1 1 1 0 Predicted pPIWI-associating nuclease BCHF PF07284.11 gi|257387057|ref|YP_003176830.1| - 0.042 13.9 0.3 0.047 13.7 0.3 1.0 1 0 0 1 1 1 0 2-vinyl bacteriochlorophyllide hydratase (BCHF) DUF5336 PF17270.2 gi|257387057|ref|YP_003176830.1| - 0.73 9.4 6.7 0.92 9.1 6.7 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5336) ATP1G1_PLM_MAT8 PF02038.16 gi|257387057|ref|YP_003176830.1| - 5.1 6.6 5.1 0.62 9.5 0.3 1.9 2 0 0 2 2 2 0 ATP1G1/PLM/MAT8 family DUF3040 PF11239.8 gi|257387057|ref|YP_003176830.1| - 5.1 7.4 8.2 9.1 6.6 8.2 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3040) Tad PF13400.6 gi|257387057|ref|YP_003176830.1| - 9.2 6.7 15.0 1.8 9.0 0.5 2.1 2 0 0 2 2 2 0 Putative Flp pilus-assembly TadE/G-like RHH_1 PF01402.21 gi|257387058|ref|YP_003176831.1| - 3.6e-07 29.9 1.7 5.5e-06 26.1 0.1 2.2 1 1 1 2 2 2 2 Ribbon-helix-helix protein, copG family RHH_8 PF17723.1 gi|257387058|ref|YP_003176831.1| - 0.063 13.5 0.0 0.064 13.4 0.0 1.1 1 0 0 1 1 1 0 Ribbon-Helix-Helix transcriptional regulator family RHH_5 PF07878.11 gi|257387058|ref|YP_003176831.1| - 0.078 12.9 0.0 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 TatC PF00902.18 gi|257387059|ref|YP_003176832.1| - 4e-69 232.6 34.9 7.3e-41 140.3 7.1 3.0 3 0 0 3 3 3 2 Sec-independent protein translocase protein (TatC) T2SSM PF04612.12 gi|257387059|ref|YP_003176832.1| - 0.14 12.2 2.1 9.7 6.2 0.1 2.6 2 0 0 2 2 2 0 Type II secretion system (T2SS), protein M DUF2951 PF11166.8 gi|257387059|ref|YP_003176832.1| - 0.37 11.0 1.7 0.47 10.7 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2951) TatC PF00902.18 gi|257387060|ref|YP_003176833.1| - 1.6e-42 145.7 14.3 1.6e-42 145.7 14.3 1.7 2 0 0 2 2 2 1 Sec-independent protein translocase protein (TatC) DHHC PF01529.20 gi|257387060|ref|YP_003176833.1| - 0.069 13.3 2.4 0.14 12.2 2.4 1.5 1 0 0 1 1 1 0 DHHC palmitoyltransferase SUR7 PF06687.12 gi|257387060|ref|YP_003176833.1| - 0.15 11.6 2.8 0.3 10.7 2.8 1.4 1 0 0 1 1 1 0 SUR7/PalI family HATPase_c PF02518.26 gi|257387061|ref|YP_003176834.1| - 8.5e-16 58.5 0.0 1.4e-15 57.7 0.0 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|257387061|ref|YP_003176834.1| - 1.8e-08 34.3 2.0 4e-08 33.2 2.0 1.6 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_2 PF13581.6 gi|257387061|ref|YP_003176834.1| - 0.0011 18.9 0.0 0.0029 17.6 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 gi|257387061|ref|YP_003176834.1| - 0.035 13.9 0.0 0.062 13.1 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase tRNA_Me_trans PF03054.16 gi|257387062|ref|YP_003176835.1| - 6.2e-10 38.4 0.1 2.9e-06 26.3 0.1 2.4 2 0 0 2 2 2 2 tRNA methyl transferase Asn_synthase PF00733.21 gi|257387062|ref|YP_003176835.1| - 1.7e-09 37.8 0.3 3.1e-09 37.0 0.3 1.4 1 0 0 1 1 1 1 Asparagine synthase NAD_synthase PF02540.17 gi|257387062|ref|YP_003176835.1| - 7.1e-09 35.1 0.0 1.3e-08 34.3 0.0 1.4 1 0 0 1 1 1 1 NAD synthase QueC PF06508.13 gi|257387062|ref|YP_003176835.1| - 9.2e-05 22.0 0.0 0.00041 19.9 0.0 1.9 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC ATP_bind_3 PF01171.20 gi|257387062|ref|YP_003176835.1| - 0.0011 18.7 0.3 0.0045 16.8 0.3 2.0 1 1 0 1 1 1 1 PP-loop family Arginosuc_synth PF00764.19 gi|257387062|ref|YP_003176835.1| - 0.0091 15.3 0.0 0.014 14.7 0.0 1.3 1 0 0 1 1 1 1 Arginosuccinate synthase QueH PF02677.14 gi|257387062|ref|YP_003176835.1| - 0.021 14.9 0.2 0.055 13.6 0.1 1.6 1 1 0 1 1 1 0 Epoxyqueuosine reductase QueH PAPS_reduct PF01507.19 gi|257387062|ref|YP_003176835.1| - 0.048 13.7 0.0 0.24 11.4 0.0 1.8 1 1 1 2 2 2 0 Phosphoadenosine phosphosulfate reductase family ThiI PF02568.14 gi|257387062|ref|YP_003176835.1| - 0.16 11.6 0.0 0.36 10.4 0.0 1.6 1 1 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) RNase_H_2 PF13482.6 gi|257387063|ref|YP_003176836.1| - 4.1e-34 118.0 0.0 5.3e-34 117.6 0.0 1.2 1 0 0 1 1 1 1 RNase_H superfamily DNA_pol_A_exo1 PF01612.20 gi|257387063|ref|YP_003176836.1| - 0.0046 16.7 0.1 0.016 15.0 0.1 1.8 1 1 0 1 1 1 1 3'-5' exonuclease DNA_pol_B_exo2 PF10108.9 gi|257387063|ref|YP_003176836.1| - 0.095 12.4 0.0 0.48 10.1 0.0 1.9 2 0 0 2 2 2 0 Predicted 3'-5' exonuclease related to the exonuclease domain of PolB RNase_T PF00929.24 gi|257387063|ref|YP_003176836.1| - 0.17 12.5 0.1 7.7 7.0 0.1 2.2 1 1 0 2 2 2 0 Exonuclease DNA_pol_B_exo1 PF03104.19 gi|257387063|ref|YP_003176836.1| - 0.2 10.7 0.0 0.74 8.9 0.0 1.8 2 0 0 2 2 2 0 DNA polymerase family B, exonuclease domain Rhomboid PF01694.22 gi|257387064|ref|YP_003176837.1| - 1.6e-24 86.6 11.4 1.6e-24 86.6 11.4 1.4 2 0 0 2 2 2 1 Rhomboid family DUF1751 PF08551.10 gi|257387064|ref|YP_003176837.1| - 1.4e-05 25.6 2.7 1.6e-05 25.4 0.3 2.2 2 1 0 2 2 2 1 Eukaryotic integral membrane protein (DUF1751) AAA_16 PF13191.6 gi|257387065|ref|YP_003176838.1| - 2e-11 44.6 0.3 3.1e-09 37.4 0.1 2.7 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|257387065|ref|YP_003176838.1| - 5.4e-09 36.4 0.0 1.1e-08 35.5 0.0 1.4 1 0 0 1 1 1 1 AAA domain Cdc6_C PF09079.11 gi|257387065|ref|YP_003176838.1| - 5.8e-06 26.2 0.0 1.7e-05 24.7 0.0 1.9 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA PF00004.29 gi|257387065|ref|YP_003176838.1| - 1e-05 25.9 0.0 2.6e-05 24.7 0.0 1.7 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_33 PF13671.6 gi|257387065|ref|YP_003176838.1| - 0.0015 18.7 0.0 0.0074 16.5 0.0 2.2 1 1 1 2 2 2 1 AAA domain RuvB_N PF05496.12 gi|257387065|ref|YP_003176838.1| - 0.0022 17.8 0.0 0.0051 16.6 0.0 1.5 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain T2SSE PF00437.20 gi|257387065|ref|YP_003176838.1| - 0.0039 16.3 0.0 0.0075 15.4 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein Gtr1_RagA PF04670.12 gi|257387065|ref|YP_003176838.1| - 0.0054 16.1 0.0 0.01 15.2 0.0 1.5 1 0 0 1 1 1 1 Gtr1/RagA G protein conserved region AAA_30 PF13604.6 gi|257387065|ref|YP_003176838.1| - 0.0059 16.3 0.7 0.062 13.0 0.0 2.5 2 1 0 2 2 2 1 AAA domain Sigma54_activat PF00158.26 gi|257387065|ref|YP_003176838.1| - 0.0059 16.3 0.0 0.013 15.2 0.0 1.5 1 0 0 1 1 1 1 Sigma-54 interaction domain NACHT PF05729.12 gi|257387065|ref|YP_003176838.1| - 0.013 15.4 0.0 0.035 14.0 0.0 1.8 2 0 0 2 2 2 0 NACHT domain AAA_7 PF12775.7 gi|257387065|ref|YP_003176838.1| - 0.015 14.8 0.0 0.13 11.7 0.0 2.1 2 0 0 2 2 2 0 P-loop containing dynein motor region AAA_35 PF14516.6 gi|257387065|ref|YP_003176838.1| - 0.018 13.9 0.1 0.065 12.1 0.1 1.8 1 1 1 2 2 2 0 AAA-like domain Zeta_toxin PF06414.12 gi|257387065|ref|YP_003176838.1| - 0.022 14.0 0.0 0.05 12.9 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin IstB_IS21 PF01695.17 gi|257387065|ref|YP_003176838.1| - 0.023 14.4 0.1 0.19 11.5 0.1 2.3 1 1 0 1 1 1 0 IstB-like ATP binding protein Rad17 PF03215.15 gi|257387065|ref|YP_003176838.1| - 0.025 14.5 0.0 0.055 13.4 0.0 1.6 1 1 0 1 1 1 0 Rad17 P-loop domain TIP49_C PF17856.1 gi|257387065|ref|YP_003176838.1| - 0.027 14.6 0.0 0.069 13.3 0.0 1.7 1 0 0 1 1 1 0 TIP49 AAA-lid domain AAA_18 PF13238.6 gi|257387065|ref|YP_003176838.1| - 0.031 14.8 0.2 0.14 12.7 0.0 2.4 2 2 0 2 2 2 0 AAA domain AAA_32 PF13654.6 gi|257387065|ref|YP_003176838.1| - 0.046 12.5 0.0 3.4 6.3 0.0 2.3 2 0 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|257387065|ref|YP_003176838.1| - 0.064 13.6 0.0 0.2 12.1 0.0 1.9 1 0 0 1 1 1 0 RNA helicase AAA_11 PF13086.6 gi|257387065|ref|YP_003176838.1| - 0.08 12.7 0.2 0.17 11.7 0.2 1.8 1 1 0 1 1 1 0 AAA domain AAA_19 PF13245.6 gi|257387065|ref|YP_003176838.1| - 0.089 13.1 0.0 0.18 12.1 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|257387065|ref|YP_003176838.1| - 0.098 12.7 0.0 0.82 9.7 0.0 2.2 1 1 0 1 1 1 0 AAA domain Mg_chelatase PF01078.21 gi|257387065|ref|YP_003176838.1| - 0.11 11.8 0.0 0.19 11.1 0.0 1.3 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI RP854 PF17460.2 gi|257387065|ref|YP_003176838.1| - 0.12 12.1 0.0 0.24 11.2 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein RP854 ATP_bind_1 PF03029.17 gi|257387065|ref|YP_003176838.1| - 0.18 11.5 0.2 5.5 6.7 0.0 2.5 3 0 0 3 3 3 0 Conserved hypothetical ATP binding protein Na_H_Exchanger PF00999.21 gi|257387066|ref|YP_003176839.1| - 0.011 14.6 1.1 0.011 14.6 1.1 1.9 1 1 1 2 2 2 0 Sodium/hydrogen exchanger family DUF1418 PF07214.12 gi|257387066|ref|YP_003176839.1| - 0.022 14.6 0.9 0.022 14.6 0.9 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF1418) DUF3180 PF11377.8 gi|257387066|ref|YP_003176839.1| - 0.037 14.1 4.4 0.047 13.8 1.6 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3180) DUF645 PF04875.12 gi|257387066|ref|YP_003176839.1| - 0.07 13.2 0.1 0.12 12.4 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function, DUF645 SSPI PF14098.6 gi|257387066|ref|YP_003176839.1| - 0.11 12.7 0.0 12 6.1 0.0 2.2 2 0 0 2 2 2 0 Small, acid-soluble spore protein I DUF2627 PF11118.8 gi|257387066|ref|YP_003176839.1| - 0.32 11.6 2.8 0.66 10.6 0.0 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF2627) DUF308 PF03729.13 gi|257387066|ref|YP_003176839.1| - 0.34 11.3 9.4 0.13 12.6 2.1 2.3 1 1 1 2 2 2 0 Short repeat of unknown function (DUF308) Herpes_LMP2 PF07415.11 gi|257387066|ref|YP_003176839.1| - 0.41 9.4 6.2 0.44 9.3 6.2 1.1 1 0 0 1 1 1 0 Gammaherpesvirus latent membrane protein (LMP2) protein EamA PF00892.20 gi|257387066|ref|YP_003176839.1| - 0.5 10.5 7.3 0.21 11.8 1.3 2.0 1 1 1 2 2 2 0 EamA-like transporter family DUF4064 PF13273.6 gi|257387066|ref|YP_003176839.1| - 0.74 10.1 4.5 1.8 8.9 1.5 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF4064) Ost4 PF10215.9 gi|257387066|ref|YP_003176839.1| - 0.89 9.4 5.6 1.2 9.0 0.8 2.5 2 0 0 2 2 2 0 Oligosaccaryltransferase Pox_A14 PF05767.12 gi|257387066|ref|YP_003176839.1| - 1.2 9.3 6.3 5.4 7.2 0.9 2.1 1 1 1 2 2 2 0 Poxvirus virion envelope protein A14 Copper-bind PF00127.20 gi|257387067|ref|YP_003176840.1| - 4.3e-16 59.2 0.0 6.2e-16 58.7 0.0 1.2 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.6 gi|257387067|ref|YP_003176840.1| - 0.00023 21.2 0.0 0.00039 20.5 0.0 1.4 1 1 0 1 1 1 1 Cupredoxin-like domain TAT_signal PF10518.9 gi|257387067|ref|YP_003176840.1| - 0.007 16.2 5.0 0.015 15.2 5.0 1.6 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence HHH_5 PF14520.6 gi|257387068|ref|YP_003176841.1| - 1e-08 35.6 0.7 4.2e-08 33.7 0.7 2.2 1 0 0 1 1 1 1 Helix-hairpin-helix domain MutS_V PF00488.21 gi|257387068|ref|YP_003176841.1| - 2.1e-06 27.9 0.1 4.9e-06 26.7 0.1 1.6 1 1 0 1 1 1 1 MutS domain V HHH PF00633.23 gi|257387068|ref|YP_003176841.1| - 1.8e-05 24.3 1.7 0.012 15.5 0.2 3.0 2 0 0 2 2 2 2 Helix-hairpin-helix motif PCP_red PF08369.10 gi|257387068|ref|YP_003176841.1| - 0.87 9.8 5.0 0.95 9.7 0.8 3.3 2 0 0 2 2 2 0 Proto-chlorophyllide reductase 57 kD subunit Usp PF00582.26 gi|257387069|ref|YP_003176842.1| - 6.7e-09 36.4 2.0 8.4e-09 36.1 2.0 1.2 1 0 0 1 1 1 1 Universal stress protein family SurE PF01975.17 gi|257387069|ref|YP_003176842.1| - 0.096 12.5 0.1 0.12 12.1 0.1 1.4 1 0 0 1 1 1 0 Survival protein SurE NolB PF17398.2 gi|257387070|ref|YP_003176843.1| - 0.045 14.1 0.1 0.16 12.4 0.1 1.9 2 0 0 2 2 2 0 Nodulation protein NolB ABC-3 PF00950.17 gi|257387071|ref|YP_003176844.1| - 1.1e-57 195.5 37.3 1.4e-57 195.1 37.3 1.2 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.18 gi|257387071|ref|YP_003176844.1| - 2.1e-05 23.7 33.6 7.3e-05 21.9 33.6 1.9 1 1 0 1 1 1 1 FecCD transport family ABC_tran PF00005.27 gi|257387072|ref|YP_003176845.1| - 3.2e-29 102.2 0.0 4.3e-29 101.8 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|257387072|ref|YP_003176845.1| - 2.2e-09 37.6 0.0 0.00033 20.6 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|257387072|ref|YP_003176845.1| - 5.4e-05 22.7 0.1 0.00091 18.7 0.1 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|257387072|ref|YP_003176845.1| - 0.00061 20.2 0.3 0.00093 19.6 0.3 1.3 1 0 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|257387072|ref|YP_003176845.1| - 0.0011 18.7 0.0 0.0021 17.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_33 PF13671.6 gi|257387072|ref|YP_003176845.1| - 0.004 17.3 0.2 0.019 15.1 0.2 2.0 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|257387072|ref|YP_003176845.1| - 0.0048 17.4 0.0 0.0058 17.2 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|257387072|ref|YP_003176845.1| - 0.0091 15.7 1.5 0.077 12.7 1.5 2.0 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.6 gi|257387072|ref|YP_003176845.1| - 0.04 14.1 0.2 0.76 10.0 0.2 2.4 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_22 PF13401.6 gi|257387072|ref|YP_003176845.1| - 0.051 13.8 0.1 0.16 12.3 0.1 1.9 1 1 0 1 1 1 0 AAA domain MeaB PF03308.16 gi|257387072|ref|YP_003176845.1| - 0.068 12.1 0.1 0.14 11.1 0.1 1.5 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_28 PF13521.6 gi|257387072|ref|YP_003176845.1| - 0.11 12.7 0.3 1.5 9.0 0.2 2.7 2 1 0 2 2 2 0 AAA domain AAA_27 PF13514.6 gi|257387072|ref|YP_003176845.1| - 0.12 12.0 0.1 0.77 9.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain DUF87 PF01935.17 gi|257387072|ref|YP_003176845.1| - 0.12 12.5 0.0 0.22 11.6 0.0 1.4 1 0 0 1 1 1 0 Helicase HerA, central domain ZnuA PF01297.17 gi|257387073|ref|YP_003176846.1| - 1.7e-53 181.7 0.0 1.8e-53 181.6 0.0 1.0 1 0 0 1 1 1 1 Zinc-uptake complex component A periplasmic LDcluster4 PF18306.1 gi|257387074|ref|YP_003176847.1| - 1.1e-30 106.2 7.1 1.7e-30 105.7 7.1 1.3 1 1 0 1 1 1 1 SLOG cluster4 family Lysine_decarbox PF03641.14 gi|257387074|ref|YP_003176847.1| - 6.3e-06 26.3 1.7 7.4e-06 26.1 0.2 1.7 1 1 1 2 2 2 1 Possible lysine decarboxylase DNA_processg_A PF02481.15 gi|257387074|ref|YP_003176847.1| - 0.0045 16.3 1.7 0.0065 15.7 1.7 1.5 1 1 0 1 1 1 1 DNA recombination-mediator protein A TOBE_3 PF12857.7 gi|257387075|ref|YP_003176848.1| - 0.016 15.1 0.3 0.049 13.5 0.2 1.9 2 0 0 2 2 2 0 TOBE-like domain APG17 PF04108.12 gi|257387075|ref|YP_003176848.1| - 0.034 13.3 0.1 0.04 13.0 0.1 1.1 1 0 0 1 1 1 0 Autophagy protein Apg17 Trp_oprn_chp PF09534.10 gi|257387075|ref|YP_003176848.1| - 0.045 13.5 10.9 0.058 13.2 10.4 1.4 1 1 0 1 1 1 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) DUF1345 PF07077.11 gi|257387075|ref|YP_003176848.1| - 0.13 12.0 1.3 2.1 8.0 1.2 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF1345) DUF872 PF05915.12 gi|257387075|ref|YP_003176848.1| - 0.24 11.6 7.9 2.4 8.3 0.8 2.2 1 1 1 2 2 2 0 Eukaryotic protein of unknown function (DUF872) DUF3040 PF11239.8 gi|257387075|ref|YP_003176848.1| - 0.89 9.9 15.6 2.3e+02 2.1 15.6 2.9 1 1 0 1 1 1 0 Protein of unknown function (DUF3040) GIDE PF12483.8 gi|257387076|ref|YP_003176849.1| - 2.7e-07 30.1 0.0 1.2e-06 28.0 0.0 2.0 2 1 0 2 2 2 1 E3 Ubiquitin ligase PCNA_N PF00705.18 gi|257387077|ref|YP_003176850.1| - 5.6e-10 39.0 0.1 1.2e-09 37.9 0.1 1.5 1 0 0 1 1 1 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.15 gi|257387077|ref|YP_003176850.1| - 5.2e-05 23.4 0.0 0.00019 21.6 0.0 2.0 2 2 0 2 2 2 1 Proliferating cell nuclear antigen, C-terminal domain Rad9 PF04139.13 gi|257387077|ref|YP_003176850.1| - 0.038 13.4 0.0 0.059 12.8 0.0 1.3 1 0 0 1 1 1 0 Rad9 Cu-oxidase_3 PF07732.15 gi|257387078|ref|YP_003176851.1| - 7.4e-14 51.8 0.0 1.5e-13 50.8 0.0 1.5 1 0 0 1 1 1 1 Multicopper oxidase Cu-oxidase_2 PF07731.14 gi|257387078|ref|YP_003176851.1| - 4.6e-09 36.1 0.0 6.3e-05 22.7 0.0 3.4 3 1 0 3 3 3 2 Multicopper oxidase Copper-bind PF00127.20 gi|257387078|ref|YP_003176851.1| - 1.4e-05 25.5 0.3 0.00027 21.3 0.1 2.6 2 1 0 2 2 2 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.6 gi|257387078|ref|YP_003176851.1| - 0.006 16.7 0.0 0.032 14.3 0.0 2.1 2 1 0 2 2 2 1 Cupredoxin-like domain TAT_signal PF10518.9 gi|257387078|ref|YP_003176851.1| - 0.041 13.7 4.5 0.074 12.9 4.5 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence MCPsignal PF00015.21 gi|257387079|ref|YP_003176852.1| - 2.4e-40 138.1 22.7 2.4e-40 138.1 22.7 5.3 3 1 4 7 7 6 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 gi|257387079|ref|YP_003176852.1| - 3.1e-14 53.1 21.9 5.1e-13 49.2 0.6 6.0 6 3 0 6 6 4 2 HAMP domain dCache_1 PF02743.18 gi|257387079|ref|YP_003176852.1| - 7.3e-08 32.5 0.6 7.3e-08 32.5 0.6 4.8 4 2 0 5 5 5 1 Cache domain ATP-synt_B PF00430.18 gi|257387079|ref|YP_003176852.1| - 0.01 15.9 17.1 0.01 15.9 17.1 4.9 3 2 1 5 5 4 0 ATP synthase B/B' CF(0) LMBR1 PF04791.16 gi|257387079|ref|YP_003176852.1| - 0.035 13.0 11.8 0.66 8.8 0.7 2.2 2 0 0 2 2 2 0 LMBR1-like membrane protein DUF2203 PF09969.9 gi|257387079|ref|YP_003176852.1| - 0.06 14.1 33.8 2.3 8.9 2.5 5.6 2 1 3 5 5 5 0 Uncharacterized conserved protein (DUF2203) SCO1-SenC PF02630.14 gi|257387079|ref|YP_003176852.1| - 0.098 12.6 7.2 0.43 10.5 2.3 3.2 3 0 0 3 3 3 0 SCO1/SenC Herpes_IE2_3 PF03361.14 gi|257387079|ref|YP_003176852.1| - 0.34 10.8 2.1 1.2 9.0 2.0 2.0 1 1 0 1 1 1 0 Herpes virus intermediate/early protein 2/3 DUF1664 PF07889.12 gi|257387079|ref|YP_003176852.1| - 0.34 11.0 42.1 0.23 11.5 5.6 6.3 3 2 4 8 8 7 0 Protein of unknown function (DUF1664) Atg14 PF10186.9 gi|257387079|ref|YP_003176852.1| - 0.76 8.8 19.3 0.62 9.1 1.3 3.4 2 1 1 3 3 3 0 Vacuolar sorting 38 and autophagy-related subunit 14 DUF948 PF06103.11 gi|257387079|ref|YP_003176852.1| - 0.83 9.9 55.5 0.11 12.8 8.6 7.3 4 2 4 8 8 7 0 Bacterial protein of unknown function (DUF948) Laminin_II PF06009.12 gi|257387079|ref|YP_003176852.1| - 1.2 9.1 47.4 0.12 12.4 1.8 6.1 3 2 3 6 6 6 0 Laminin Domain II Fib_alpha PF08702.10 gi|257387079|ref|YP_003176852.1| - 1.5 9.0 30.0 6.4 7.0 0.3 5.6 4 2 1 5 5 5 0 Fibrinogen alpha/beta chain family RPW8 PF05659.11 gi|257387079|ref|YP_003176852.1| - 1.5 8.5 9.2 12 5.6 0.0 4.6 3 2 1 5 5 5 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 Seryl_tRNA_N PF02403.22 gi|257387079|ref|YP_003176852.1| - 1.6 9.0 37.8 2.2 8.6 6.2 5.9 1 1 5 6 6 6 0 Seryl-tRNA synthetase N-terminal domain ALS2CR8 PF15299.6 gi|257387079|ref|YP_003176852.1| - 1.7 8.5 4.9 4.5 7.1 0.4 2.3 2 0 0 2 2 2 0 Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8 DUF1854 PF08909.11 gi|257387079|ref|YP_003176852.1| - 1.8 8.4 7.2 11 5.9 0.1 3.3 3 1 0 3 3 3 0 Domain of unknown function (DUF1854) BLOC1_2 PF10046.9 gi|257387079|ref|YP_003176852.1| - 2.3 8.6 32.3 8.1 6.8 0.6 6.4 3 2 2 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Spc7 PF08317.11 gi|257387079|ref|YP_003176852.1| - 2.4 7.0 43.3 0.91 8.3 12.8 3.9 1 1 2 4 4 4 0 Spc7 kinetochore protein Mce4_CUP1 PF11887.8 gi|257387079|ref|YP_003176852.1| - 3.6 7.0 23.3 0.089 12.2 0.5 3.8 1 1 3 4 4 4 0 Cholesterol uptake porter CUP1 of Mce4, putative Prominin PF05478.11 gi|257387079|ref|YP_003176852.1| - 4.2 5.2 19.7 0.22 9.5 8.0 2.5 1 1 0 2 2 2 0 Prominin Filament PF00038.21 gi|257387079|ref|YP_003176852.1| - 4.8 6.7 39.9 2.2 7.8 10.6 3.8 1 1 1 3 3 3 0 Intermediate filament protein RecG_N PF17190.4 gi|257387079|ref|YP_003176852.1| - 5.1 7.9 5.6 90 3.9 0.0 4.2 4 1 1 5 5 5 0 RecG N-terminal helical domain APG17 PF04108.12 gi|257387079|ref|YP_003176852.1| - 5.2 6.1 35.9 0.67 9.0 6.1 4.7 2 1 2 5 5 5 0 Autophagy protein Apg17 ApoO PF09769.9 gi|257387079|ref|YP_003176852.1| - 6 6.8 14.0 4.8 7.2 0.7 4.6 3 2 1 4 4 4 0 Apolipoprotein O Sec34 PF04136.15 gi|257387079|ref|YP_003176852.1| - 6.8 6.6 23.4 0.88 9.4 1.2 5.2 3 2 1 5 5 5 0 Sec34-like family PTPA PF03095.15 gi|257387079|ref|YP_003176852.1| - 8.2 5.8 7.0 4.9 6.5 0.8 2.8 1 1 1 3 3 3 0 Phosphotyrosyl phosphate activator (PTPA) protein KxDL PF10241.9 gi|257387079|ref|YP_003176852.1| - 9 6.7 16.5 1.3 9.3 0.3 4.7 3 2 1 5 5 4 0 Uncharacterized conserved protein Bmp PF02608.14 gi|257387080|ref|YP_003176853.1| - 1.8e-61 207.7 0.1 2.7e-61 207.2 0.1 1.1 1 0 0 1 1 1 1 ABC transporter substrate-binding protein PnrA-like FtsJ PF01728.19 gi|257387081|ref|YP_003176854.1| - 1.3e-54 184.9 0.0 1.6e-54 184.7 0.0 1.1 1 0 0 1 1 1 1 FtsJ-like methyltransferase TRAM PF01938.20 gi|257387081|ref|YP_003176854.1| - 2.5e-16 59.4 1.6 5.6e-16 58.3 1.6 1.6 1 0 0 1 1 1 1 TRAM domain Methyltransf_31 PF13847.6 gi|257387081|ref|YP_003176854.1| - 9.6e-06 25.5 0.0 0.0045 16.8 0.0 2.1 2 0 0 2 2 2 2 Methyltransferase domain Methyltransf_23 PF13489.6 gi|257387081|ref|YP_003176854.1| - 0.0069 16.2 0.0 0.0097 15.7 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|257387081|ref|YP_003176854.1| - 0.04 14.6 0.5 0.23 12.2 0.5 2.3 1 1 0 1 1 1 0 Methyltransferase domain Ribosomal_L19 PF01245.20 gi|257387081|ref|YP_003176854.1| - 0.082 12.9 0.1 0.19 11.7 0.1 1.5 1 0 0 1 1 1 0 Ribosomal protein L19 NSP16 PF06460.12 gi|257387081|ref|YP_003176854.1| - 0.14 11.3 0.0 0.2 10.7 0.0 1.2 1 0 0 1 1 1 0 Coronavirus NSP16 TRAM PF01938.20 gi|257387082|ref|YP_003176855.1| - 1.4e-09 37.8 0.3 1.9e-09 37.4 0.3 1.2 1 0 0 1 1 1 1 TRAM domain DUF543 PF04418.12 gi|257387083|ref|YP_003176856.1| - 0.0096 15.9 0.0 0.014 15.4 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF543) DUF5367 PF17329.2 gi|257387083|ref|YP_003176856.1| - 0.084 13.0 0.1 0.12 12.5 0.1 1.2 1 0 0 1 1 1 0 Family of unknown function (DUF5367) adh_short_C2 PF13561.6 gi|257387084|ref|YP_003176857.1| - 6.6e-47 160.0 0.3 9.7e-47 159.5 0.3 1.2 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|257387084|ref|YP_003176857.1| - 1.2e-37 129.2 0.1 1.4e-37 129.0 0.1 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|257387084|ref|YP_003176857.1| - 3.7e-11 43.3 0.3 5.7e-11 42.6 0.3 1.3 1 0 0 1 1 1 1 KR domain MitoNEET_N PF10660.9 gi|257387085|ref|YP_003176858.1| - 0.44 10.6 2.2 1 9.4 0.2 2.0 2 0 0 2 2 2 0 Iron-containing outer mitochondrial membrane protein N-terminus DUF3082 PF11282.8 gi|257387085|ref|YP_003176858.1| - 4.9 7.5 10.3 6.5 7.1 2.0 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF3082) NTP_transferase PF00483.23 gi|257387086|ref|YP_003176859.1| - 4.2e-37 128.1 0.0 5.8e-37 127.6 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|257387086|ref|YP_003176859.1| - 2.7e-07 31.1 6.9 4.6e-05 23.8 6.9 2.6 1 1 0 1 1 1 1 MobA-like NTP transferase domain MannoseP_isomer PF01050.18 gi|257387086|ref|YP_003176859.1| - 0.15 12.0 0.1 0.26 11.2 0.1 1.4 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase Cob_adeno_trans PF01923.18 gi|257387087|ref|YP_003176860.1| - 0.029 14.5 0.5 0.89 9.7 0.1 2.0 2 0 0 2 2 2 0 Cobalamin adenosyltransferase tRNA_anti-codon PF01336.25 gi|257387088|ref|YP_003176861.1| - 0.0011 19.0 0.5 0.018 15.0 0.1 2.9 2 1 0 2 2 2 1 OB-fold nucleic acid binding domain HH_signal PF01085.18 gi|257387088|ref|YP_003176861.1| - 0.054 13.1 0.2 3.1 7.4 0.0 2.3 2 0 0 2 2 2 0 Hedgehog amino-terminal signalling domain Notch PF00066.17 gi|257387088|ref|YP_003176861.1| - 0.18 12.3 0.6 0.27 11.7 0.6 1.3 1 0 0 1 1 1 0 LNR domain CopG_antitoxin PF12441.8 gi|257387090|ref|YP_003176863.1| - 0.048 14.2 0.2 0.15 12.6 0.0 1.9 2 1 0 2 2 2 0 CopG antitoxin of type II toxin-antitoxin system RHH_1 PF01402.21 gi|257387090|ref|YP_003176863.1| - 0.048 13.6 1.1 0.07 13.1 0.1 1.8 2 0 0 2 2 2 0 Ribbon-helix-helix protein, copG family YabA PF06156.13 gi|257387090|ref|YP_003176863.1| - 0.13 13.0 1.7 0.21 12.3 1.7 1.5 1 0 0 1 1 1 0 Initiation control protein YabA PBP_sp32 PF07222.12 gi|257387090|ref|YP_003176863.1| - 0.15 11.5 3.0 0.17 11.3 3.0 1.1 1 0 0 1 1 1 0 Proacrosin binding protein sp32 UPF0242 PF06785.11 gi|257387090|ref|YP_003176863.1| - 4.5 7.3 8.3 3.7 7.6 6.9 1.6 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus HNH PF01844.23 gi|257387092|ref|YP_003176865.1| - 9.2e-05 22.5 0.0 0.00016 21.7 0.0 1.5 2 0 0 2 2 2 1 HNH endonuclease CBS PF00571.28 gi|257387093|ref|YP_003176866.1| - 7.1e-20 71.2 11.5 7.6e-11 42.3 0.3 2.9 3 0 0 3 3 3 2 CBS domain Peptidase_M50 PF02163.22 gi|257387093|ref|YP_003176866.1| - 2.2e-15 56.7 7.1 5.4e-09 35.7 0.3 2.7 1 1 1 2 2 2 2 Peptidase family M50 Peptidase_M50B PF13398.6 gi|257387093|ref|YP_003176866.1| - 8.4e-05 22.3 4.8 8.4e-05 22.3 4.8 1.7 2 0 0 2 2 2 1 Peptidase M50B-like DUF3267 PF11667.8 gi|257387093|ref|YP_003176866.1| - 0.001 19.3 1.6 0.001 19.3 1.6 2.6 2 0 0 2 2 2 1 Putative zincin peptidase DUF4777 PF16007.5 gi|257387094|ref|YP_003176867.1| - 0.051 13.8 0.4 0.46 10.8 0.1 2.6 2 1 1 3 3 3 0 Domain of unknown function (DUF4777) DUF4013 PF13197.6 gi|257387095|ref|YP_003176868.1| - 3.1e-31 108.5 17.0 3.1e-31 108.5 17.0 1.8 1 1 1 2 2 2 1 Protein of unknown function (DUF4013) DUF3169 PF11368.8 gi|257387095|ref|YP_003176868.1| - 0.061 12.8 4.2 0.24 10.9 0.0 2.6 1 1 2 3 3 3 0 Protein of unknown function (DUF3169) DEAD PF00270.29 gi|257387096|ref|YP_003176869.1| - 9.4e-20 71.1 0.0 1.6e-19 70.3 0.0 1.3 1 0 0 1 1 1 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|257387096|ref|YP_003176869.1| - 3.1e-14 53.3 0.0 7.5e-14 52.0 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|257387096|ref|YP_003176869.1| - 3.3e-10 40.2 0.0 6.4e-10 39.3 0.0 1.4 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit CitMHS PF03600.16 gi|257387097|ref|YP_003176870.1| - 3.4e-62 210.3 1.5 3.4e-62 210.3 1.5 1.4 1 1 0 1 1 1 1 Citrate transporter TrkA_C PF02080.21 gi|257387097|ref|YP_003176870.1| - 1.4e-20 72.8 5.2 8.2e-14 51.2 0.2 2.5 2 0 0 2 2 2 2 TrkA-C domain Na_sulph_symp PF00939.19 gi|257387097|ref|YP_003176870.1| - 1.6e-19 70.3 34.4 1.6e-13 50.5 14.9 3.4 2 2 1 3 3 3 3 Sodium:sulfate symporter transmembrane region VAPB_antitox PF02697.14 gi|257387098|ref|YP_003176871.1| - 9.6e-12 45.5 2.7 1.1e-11 45.3 2.7 1.1 1 0 0 1 1 1 1 Putative antitoxin Cupin_4 PF08007.12 gi|257387098|ref|YP_003176871.1| - 0.0062 16.0 0.3 0.0062 16.0 0.3 1.0 1 0 0 1 1 1 1 Cupin superfamily protein Snapin_Pallidin PF14712.6 gi|257387098|ref|YP_003176871.1| - 0.017 15.5 0.2 0.021 15.2 0.2 1.1 1 0 0 1 1 1 0 Snapin/Pallidin CorA PF01544.18 gi|257387098|ref|YP_003176871.1| - 0.082 12.2 1.4 0.096 12.0 1.4 1.2 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein EspB PF05802.11 gi|257387098|ref|YP_003176871.1| - 0.2 11.6 0.4 0.32 10.9 0.1 1.5 1 1 0 1 1 1 0 Enterobacterial EspB protein RHH_1 PF01402.21 gi|257387098|ref|YP_003176871.1| - 0.9 9.6 9.9 0.54 10.3 0.3 2.9 3 0 0 3 3 3 0 Ribbon-helix-helix protein, copG family PIN PF01850.21 gi|257387099|ref|YP_003176872.1| - 1.5e-05 25.5 0.1 2e-05 25.1 0.1 1.2 1 0 0 1 1 1 1 PIN domain DUF2263 PF10021.9 gi|257387099|ref|YP_003176872.1| - 0.057 13.8 0.0 0.071 13.5 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2263) CcmD PF04995.14 gi|257387100|ref|YP_003176873.1| - 0.09 12.9 0.2 0.09 12.9 0.2 3.4 3 1 1 4 4 4 0 Heme exporter protein D (CcmD) DsbD_2 PF13386.6 gi|257387100|ref|YP_003176873.1| - 0.11 12.4 1.8 0.17 11.8 1.8 1.2 1 0 0 1 1 1 0 Cytochrome C biogenesis protein transmembrane region Phage_holin_3_6 PF07332.11 gi|257387100|ref|YP_003176873.1| - 0.36 10.9 4.7 0.53 10.4 2.4 2.1 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III UCMA PF17085.5 gi|257387100|ref|YP_003176873.1| - 0.46 10.5 3.2 1 9.4 1.8 2.1 2 0 0 2 2 2 0 Unique cartilage matrix associated protein MCM PF00493.23 gi|257387101|ref|YP_003176874.1| - 8.6e-84 280.1 0.0 2.3e-63 213.3 0.0 2.4 2 0 0 2 2 2 2 MCM P-loop domain MCM_OB PF17207.3 gi|257387101|ref|YP_003176874.1| - 3.1e-36 124.0 0.4 7.4e-36 122.8 0.4 1.6 1 0 0 1 1 1 1 MCM OB domain MCM_lid PF17855.1 gi|257387101|ref|YP_003176874.1| - 1.8e-26 92.4 0.6 3.9e-26 91.3 0.6 1.6 1 0 0 1 1 1 1 MCM AAA-lid domain Intein_splicing PF14890.6 gi|257387101|ref|YP_003176874.1| - 7e-21 74.6 0.0 2.4e-20 72.9 0.0 2.0 1 0 0 1 1 1 1 Intein splicing domain MCM_N PF14551.6 gi|257387101|ref|YP_003176874.1| - 3.4e-08 34.0 1.5 7e-08 33.0 0.3 2.1 2 0 0 2 2 2 1 MCM N-terminal domain Mg_chelatase PF01078.21 gi|257387101|ref|YP_003176874.1| - 9.7e-08 31.6 0.1 2.8e-05 23.6 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Hint PF01079.20 gi|257387101|ref|YP_003176874.1| - 0.0014 18.2 0.0 0.046 13.2 0.0 2.4 2 0 0 2 2 2 1 Hint module AAA_5 PF07728.14 gi|257387101|ref|YP_003176874.1| - 0.0023 17.9 0.1 0.41 10.6 0.0 2.5 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) Sigma54_activat PF00158.26 gi|257387101|ref|YP_003176874.1| - 0.04 13.6 0.1 1.4 8.6 0.0 2.3 2 0 0 2 2 2 0 Sigma-54 interaction domain DUF835 PF05763.12 gi|257387103|ref|YP_003176876.1| - 0.18 11.5 0.0 0.26 11.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF835) OxoGdeHyase_C PF16870.5 gi|257387104|ref|YP_003176877.1| - 0.034 13.9 0.0 0.042 13.5 0.0 1.1 1 0 0 1 1 1 0 2-oxoglutarate dehydrogenase C-terminal FUSC PF04632.12 gi|257387105|ref|YP_003176878.1| - 0.073 11.6 12.5 0.087 11.4 12.5 1.2 1 0 0 1 1 1 0 Fusaric acid resistance protein family PspB PF06667.12 gi|257387106|ref|YP_003176879.1| - 0.063 13.3 0.2 1.5 8.9 0.0 2.3 2 0 0 2 2 2 0 Phage shock protein B ParA PF10609.9 gi|257387107|ref|YP_003176880.1| - 2.1e-12 47.0 0.5 5e-07 29.4 0.2 2.9 3 0 0 3 3 3 2 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|257387107|ref|YP_003176880.1| - 2.6e-10 40.4 0.0 3.5e-10 40.0 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain Fer4_NifH PF00142.18 gi|257387107|ref|YP_003176880.1| - 7.8e-07 28.8 0.1 0.0032 16.9 0.0 2.2 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_31 PF13614.6 gi|257387107|ref|YP_003176880.1| - 3.5e-06 27.1 0.1 0.0021 18.0 0.4 2.1 2 0 0 2 2 2 2 AAA domain CBP_BcsQ PF06564.12 gi|257387107|ref|YP_003176880.1| - 0.00037 20.0 0.5 0.63 9.5 0.1 3.1 2 1 0 2 2 2 1 Cellulose biosynthesis protein BcsQ AAA_24 PF13479.6 gi|257387107|ref|YP_003176880.1| - 0.00062 19.5 0.0 0.00088 19.1 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|257387107|ref|YP_003176880.1| - 0.0012 19.1 0.1 0.0028 17.8 0.1 1.9 1 1 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.15 gi|257387107|ref|YP_003176880.1| - 0.013 14.7 0.5 0.02 14.1 0.5 1.2 1 0 0 1 1 1 0 Anion-transporting ATPase AAA_25 PF13481.6 gi|257387107|ref|YP_003176880.1| - 0.12 11.9 2.8 0.14 11.7 0.5 2.2 1 1 1 2 2 2 0 AAA domain AAA_26 PF13500.6 gi|257387107|ref|YP_003176880.1| - 0.15 11.9 0.6 2.5 7.9 0.0 2.3 2 1 0 2 2 2 0 AAA domain MipZ PF09140.11 gi|257387107|ref|YP_003176880.1| - 0.18 11.0 0.5 0.53 9.5 0.5 1.7 1 1 0 1 1 1 0 ATPase MipZ X PF00739.19 gi|257387107|ref|YP_003176880.1| - 2.1 8.5 8.3 6.6 6.8 2.7 2.3 1 1 0 2 2 2 0 Trans-activation protein X TFIIB PF00382.19 gi|257387108|ref|YP_003176881.1| - 1.8e-32 111.2 2.8 2.7e-16 59.4 0.1 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|257387108|ref|YP_003176881.1| - 2.2e-11 43.1 0.6 3.8e-11 42.3 0.6 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.11 gi|257387108|ref|YP_003176881.1| - 0.0011 18.8 0.5 0.0032 17.3 0.5 1.8 1 0 0 1 1 1 1 Putative transposase DNA-binding domain RB_B PF01857.20 gi|257387108|ref|YP_003176881.1| - 0.0025 17.9 0.0 0.0043 17.1 0.0 1.3 1 0 0 1 1 1 1 Retinoblastoma-associated protein B domain zf-ribbon_3 PF13248.6 gi|257387108|ref|YP_003176881.1| - 0.017 14.6 0.9 0.033 13.6 0.9 1.5 1 0 0 1 1 1 0 zinc-ribbon domain DZR PF12773.7 gi|257387108|ref|YP_003176881.1| - 0.017 15.1 1.2 0.03 14.3 1.2 1.4 1 0 0 1 1 1 0 Double zinc ribbon FYVE PF01363.21 gi|257387108|ref|YP_003176881.1| - 0.12 12.5 0.2 0.19 11.9 0.2 1.5 1 0 0 1 1 1 0 FYVE zinc finger UPF0547 PF10571.9 gi|257387108|ref|YP_003176881.1| - 6.9 6.8 6.2 1.3 9.2 2.5 1.7 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 HTH_28 PF13518.6 gi|257387109|ref|YP_003176882.1| - 0.18 12.0 1.2 2.9 8.1 0.1 2.9 3 1 0 3 3 3 0 Helix-turn-helix domain AAA_31 PF13614.6 gi|257387110|ref|YP_003176883.1| - 6.4e-10 39.2 0.0 8.3e-10 38.9 0.0 1.1 1 0 0 1 1 1 1 AAA domain CBP_BcsQ PF06564.12 gi|257387110|ref|YP_003176883.1| - 2e-08 34.0 0.0 3e-08 33.4 0.0 1.2 1 0 0 1 1 1 1 Cellulose biosynthesis protein BcsQ CbiA PF01656.23 gi|257387110|ref|YP_003176883.1| - 0.00014 22.0 0.0 0.00015 21.8 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.11 gi|257387110|ref|YP_003176883.1| - 0.00022 20.6 0.6 0.042 13.1 0.1 2.1 2 0 0 2 2 2 2 ATPase MipZ ParA PF10609.9 gi|257387110|ref|YP_003176883.1| - 0.0036 16.8 0.3 0.018 14.5 0.4 1.8 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase HIT PF01230.23 gi|257387111|ref|YP_003176884.1| - 1.5e-24 86.6 0.1 1.7e-24 86.4 0.1 1.1 1 0 0 1 1 1 1 HIT domain DcpS_C PF11969.8 gi|257387111|ref|YP_003176884.1| - 1e-14 55.0 0.0 1.2e-14 54.7 0.0 1.1 1 0 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding CwfJ_C_1 PF04677.15 gi|257387111|ref|YP_003176884.1| - 0.0066 16.3 0.0 0.012 15.5 0.0 1.5 1 0 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 UPF0047 PF01894.17 gi|257387112|ref|YP_003176885.1| - 5.8e-33 113.5 0.0 6.8e-33 113.3 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 Gal4_dimer PF03902.13 gi|257387112|ref|YP_003176885.1| - 0.01 16.0 0.0 0.015 15.4 0.0 1.3 1 0 0 1 1 1 0 Gal4-like dimerisation domain HTH_20 PF12840.7 gi|257387114|ref|YP_003176887.1| - 5.9e-06 26.2 0.7 9.5e-06 25.6 0.7 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|257387114|ref|YP_003176887.1| - 0.0005 19.9 0.2 0.0011 18.9 0.1 1.5 2 0 0 2 2 2 1 MarR family HTH_11 PF08279.12 gi|257387114|ref|YP_003176887.1| - 0.0017 18.2 0.0 0.0028 17.5 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.6 gi|257387114|ref|YP_003176887.1| - 0.0021 17.6 0.0 0.0038 16.8 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|257387114|ref|YP_003176887.1| - 0.012 15.5 0.1 0.034 14.0 0.0 1.8 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_IclR PF09339.10 gi|257387114|ref|YP_003176887.1| - 0.041 13.7 0.0 0.065 13.0 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain TrmB PF01978.19 gi|257387114|ref|YP_003176887.1| - 0.14 12.1 0.0 0.19 11.6 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Bundlin PF05307.11 gi|257387115|ref|YP_003176888.1| - 0.019 14.8 0.1 0.032 14.1 0.1 1.3 1 0 0 1 1 1 0 Bundlin tRNA-synt_1 PF00133.22 gi|257387116|ref|YP_003176889.1| - 3.4e-172 573.8 0.2 4.4e-172 573.5 0.2 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|257387116|ref|YP_003176889.1| - 6.8e-31 107.3 0.1 1.3e-30 106.4 0.1 1.5 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|257387116|ref|YP_003176889.1| - 3e-26 92.1 0.1 5.3e-11 41.9 0.0 3.9 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1_2 PF13603.6 gi|257387116|ref|YP_003176889.1| - 0.006 16.1 0.0 0.029 13.9 0.0 2.0 1 1 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 tRNA-synt_1e PF01406.19 gi|257387116|ref|YP_003176889.1| - 0.01 15.2 0.0 4.9 6.4 0.0 2.6 2 0 0 2 2 2 0 tRNA synthetases class I (C) catalytic domain TipAS PF07739.13 gi|257387116|ref|YP_003176889.1| - 0.08 13.5 0.9 0.83 10.2 0.1 2.9 3 0 0 3 3 3 0 TipAS antibiotic-recognition domain zf-ACC PF17848.1 gi|257387116|ref|YP_003176889.1| - 0.22 11.6 0.2 0.52 10.4 0.2 1.6 1 0 0 1 1 1 0 Acetyl-coA carboxylase zinc finger domain DUF4177 PF13783.6 gi|257387117|ref|YP_003176890.1| - 0.00018 21.7 0.0 0.00023 21.4 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4177) Bac_rhodopsin PF01036.18 gi|257387118|ref|YP_003176891.1| - 7.5e-52 176.1 21.8 8.7e-52 175.9 21.8 1.0 1 0 0 1 1 1 1 Bacteriorhodopsin-like protein Gly_rich_SFCGS PF14272.6 gi|257387118|ref|YP_003176891.1| - 0.08 13.0 0.0 0.16 12.0 0.0 1.4 1 0 0 1 1 1 0 Glycine-rich SFCGS PEP-CTERM PF07589.11 gi|257387118|ref|YP_003176891.1| - 1.6 8.9 4.1 7.5 6.8 0.4 3.3 2 0 0 2 2 2 0 PEP-CTERM motif Peptidase_A24 PF01478.18 gi|257387119|ref|YP_003176892.1| - 0.11 12.9 2.3 0.11 12.9 2.3 1.1 1 0 0 1 1 1 0 Type IV leader peptidase family DHHA1 PF02272.19 gi|257387120|ref|YP_003176893.1| - 3.4e-19 69.6 0.8 7.6e-19 68.5 0.8 1.6 1 0 0 1 1 1 1 DHHA1 domain ATPase PF06745.13 gi|257387123|ref|YP_003176896.1| - 1.9e-42 145.2 0.0 2.1e-42 145.0 0.0 1.0 1 0 0 1 1 1 1 KaiC GvpD PF07088.11 gi|257387123|ref|YP_003176896.1| - 3.8e-08 32.4 0.0 1e-07 31.0 0.0 1.6 1 1 0 1 1 1 1 GvpD gas vesicle protein DnaB_C PF03796.15 gi|257387123|ref|YP_003176896.1| - 1e-05 25.1 0.0 2e-05 24.1 0.0 1.6 1 1 0 1 1 1 1 DnaB-like helicase C terminal domain MEDS PF14417.6 gi|257387123|ref|YP_003176896.1| - 2.6e-05 24.1 0.0 5.7e-05 23.0 0.0 1.6 1 0 0 1 1 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain AAA_25 PF13481.6 gi|257387123|ref|YP_003176896.1| - 6.7e-05 22.6 0.0 0.00021 21.0 0.0 1.7 1 1 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|257387123|ref|YP_003176896.1| - 0.0002 21.4 0.0 0.00035 20.6 0.0 1.4 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea IstB_IS21 PF01695.17 gi|257387123|ref|YP_003176896.1| - 0.00083 19.1 0.0 0.0012 18.6 0.0 1.3 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_19 PF13245.6 gi|257387123|ref|YP_003176896.1| - 0.00093 19.5 0.1 0.0015 18.9 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|257387123|ref|YP_003176896.1| - 0.0013 18.5 0.1 0.01 15.6 0.1 2.2 1 1 0 1 1 1 1 AAA domain AAA_14 PF13173.6 gi|257387123|ref|YP_003176896.1| - 0.0014 18.6 0.0 0.0032 17.5 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|257387123|ref|YP_003176896.1| - 0.0015 18.7 0.1 0.003 17.7 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|257387123|ref|YP_003176896.1| - 0.0018 18.5 0.0 0.0032 17.7 0.0 1.5 1 1 0 1 1 1 1 AAA domain RecA PF00154.21 gi|257387123|ref|YP_003176896.1| - 0.0033 16.9 0.1 0.0057 16.2 0.1 1.7 1 1 0 1 1 1 1 recA bacterial DNA recombination protein AAA_30 PF13604.6 gi|257387123|ref|YP_003176896.1| - 0.0055 16.5 0.0 0.0077 16.0 0.0 1.3 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|257387123|ref|YP_003176896.1| - 0.0056 17.1 0.9 0.25 11.7 0.9 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 gi|257387123|ref|YP_003176896.1| - 0.0068 16.3 0.1 0.016 15.1 0.0 1.7 2 0 0 2 2 2 1 NACHT domain AAA_22 PF13401.6 gi|257387123|ref|YP_003176896.1| - 0.0077 16.5 0.1 0.012 15.9 0.1 1.6 1 1 0 1 1 1 1 AAA domain AAA_11 PF13086.6 gi|257387123|ref|YP_003176896.1| - 0.018 14.9 0.0 0.027 14.3 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|257387123|ref|YP_003176896.1| - 0.019 15.4 0.1 0.033 14.6 0.1 1.5 1 1 0 1 1 1 0 AAA ATPase domain T2SSE PF00437.20 gi|257387123|ref|YP_003176896.1| - 0.027 13.5 0.0 0.047 12.8 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein cobW PF02492.19 gi|257387123|ref|YP_003176896.1| - 0.041 13.5 0.0 0.084 12.5 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain RNA_helicase PF00910.22 gi|257387123|ref|YP_003176896.1| - 0.06 13.7 0.0 0.11 12.9 0.0 1.4 1 0 0 1 1 1 0 RNA helicase Guanylate_kin PF00625.21 gi|257387123|ref|YP_003176896.1| - 0.06 13.0 0.0 0.083 12.6 0.0 1.3 1 0 0 1 1 1 0 Guanylate kinase ATP_bind_1 PF03029.17 gi|257387123|ref|YP_003176896.1| - 0.067 13.0 0.0 0.15 11.8 0.0 1.6 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein KTI12 PF08433.10 gi|257387123|ref|YP_003176896.1| - 0.069 12.6 0.0 0.11 11.9 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_18 PF13238.6 gi|257387123|ref|YP_003176896.1| - 0.099 13.2 0.2 0.17 12.4 0.2 1.6 1 1 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|257387123|ref|YP_003176896.1| - 0.1 13.1 0.1 0.22 12.0 0.1 1.5 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|257387123|ref|YP_003176896.1| - 0.11 11.8 0.0 0.22 10.8 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin CobU PF02283.16 gi|257387123|ref|YP_003176896.1| - 0.16 11.5 0.2 7.4 6.1 0.0 2.2 2 0 0 2 2 2 0 Cobinamide kinase / cobinamide phosphate guanyltransferase DZR PF12773.7 gi|257387124|ref|YP_003176897.1| - 0.0022 18.0 1.8 0.0045 17.0 1.9 1.4 1 1 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|257387124|ref|YP_003176897.1| - 0.0095 15.6 4.8 0.038 13.7 4.8 1.9 1 1 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|257387124|ref|YP_003176897.1| - 0.016 15.9 0.2 0.017 15.8 0.2 1.1 1 0 0 1 1 1 0 zinc-ribbon family HypA PF01155.19 gi|257387124|ref|YP_003176897.1| - 0.041 13.9 0.2 0.046 13.7 0.2 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TF_Zn_Ribbon PF08271.12 gi|257387124|ref|YP_003176897.1| - 0.081 12.5 1.0 0.11 12.0 1.0 1.3 1 0 0 1 1 1 0 TFIIB zinc-binding DNA_RNApol_7kD PF03604.13 gi|257387124|ref|YP_003176897.1| - 0.12 12.1 7.5 4.3 7.1 1.6 2.2 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit OrfB_Zn_ribbon PF07282.11 gi|257387124|ref|YP_003176897.1| - 0.16 11.9 1.2 0.21 11.5 1.2 1.2 1 0 0 1 1 1 0 Putative transposase DNA-binding domain SLAC1 PF03595.17 gi|257387124|ref|YP_003176897.1| - 0.19 11.0 0.0 0.2 10.9 0.0 1.0 1 0 0 1 1 1 0 Voltage-dependent anion channel Zn-ribbon_8 PF09723.10 gi|257387124|ref|YP_003176897.1| - 0.47 10.6 3.5 1 9.6 3.5 1.6 1 1 0 1 1 1 0 Zinc ribbon domain Rubredoxin_2 PF18073.1 gi|257387124|ref|YP_003176897.1| - 1.1 9.1 5.9 6 6.7 0.9 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain RNA_POL_M_15KD PF02150.16 gi|257387124|ref|YP_003176897.1| - 2.2 8.2 5.4 13 5.8 0.3 2.1 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit Hexapep PF00132.24 gi|257387125|ref|YP_003176898.1| - 4.8e-07 29.3 0.8 0.24 11.2 0.0 3.7 4 0 0 4 4 4 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|257387125|ref|YP_003176898.1| - 0.0011 18.7 3.1 0.21 11.4 0.0 3.4 3 1 0 3 3 3 2 Hexapeptide repeat of succinyl-transferase CPBP PF02517.16 gi|257387126|ref|YP_003176899.1| - 3.8e-16 59.2 2.9 3.8e-16 59.2 2.9 2.6 3 0 0 3 3 3 1 CPBP intramembrane metalloprotease Aldo_ket_red PF00248.21 gi|257387127|ref|YP_003176900.1| - 2.6e-50 171.3 0.0 3.6e-50 170.8 0.0 1.2 1 0 0 1 1 1 1 Aldo/keto reductase family Lactamase_B_2 PF12706.7 gi|257387128|ref|YP_003176901.1| - 8.1e-25 87.5 1.0 1.3e-11 44.4 0.2 2.1 2 0 0 2 2 2 2 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|257387128|ref|YP_003176901.1| - 8.1e-15 55.3 7.4 5.2e-13 49.5 7.4 2.2 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_4 PF13691.6 gi|257387128|ref|YP_003176901.1| - 4.7e-05 23.0 0.0 8.6e-05 22.2 0.0 1.4 1 0 0 1 1 1 1 tRNase Z endonuclease RmlD_sub_bind PF04321.17 gi|257387128|ref|YP_003176901.1| - 0.053 12.6 0.0 0.08 12.0 0.0 1.2 1 0 0 1 1 1 0 RmlD substrate binding domain NAD_binding_10 PF13460.6 gi|257387129|ref|YP_003176902.1| - 2.2e-21 76.6 0.0 2.8e-21 76.2 0.0 1.2 1 0 0 1 1 1 1 NAD(P)H-binding NmrA PF05368.13 gi|257387129|ref|YP_003176902.1| - 1.2e-16 61.0 0.0 1.7e-16 60.5 0.0 1.2 1 0 0 1 1 1 1 NmrA-like family Epimerase PF01370.21 gi|257387129|ref|YP_003176902.1| - 4e-13 49.4 0.0 1e-12 48.1 0.0 1.6 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|257387129|ref|YP_003176902.1| - 6.4e-07 28.7 0.0 2.4e-06 26.8 0.0 1.7 2 0 0 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family GDP_Man_Dehyd PF16363.5 gi|257387129|ref|YP_003176902.1| - 7.7e-05 22.2 0.0 0.00012 21.6 0.0 1.3 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|257387129|ref|YP_003176902.1| - 9.1e-05 21.7 0.0 0.005 16.0 0.0 2.2 2 0 0 2 2 2 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|257387129|ref|YP_003176902.1| - 0.0009 18.5 0.0 0.0017 17.6 0.0 1.4 1 0 0 1 1 1 1 Male sterility protein PAC2 PF09754.9 gi|257387129|ref|YP_003176902.1| - 0.028 14.4 0.0 0.041 13.9 0.0 1.3 1 0 0 1 1 1 0 PAC2 family Dicer_dimer PF03368.14 gi|257387132|ref|YP_003176905.1| - 0.15 12.2 0.0 0.32 11.2 0.0 1.5 1 0 0 1 1 1 0 Dicer dimerisation domain UvrC_HhH_N PF08459.11 gi|257387133|ref|YP_003176906.1| - 1.1e-40 139.1 0.0 1.8e-40 138.4 0.0 1.4 1 0 0 1 1 1 1 UvrC Helix-hairpin-helix N-terminal HHH PF00633.23 gi|257387133|ref|YP_003176906.1| - 8.9e-11 41.1 0.4 6.3e-07 29.0 0.1 2.7 2 0 0 2 2 2 2 Helix-hairpin-helix motif HHH_2 PF12826.7 gi|257387133|ref|YP_003176906.1| - 2e-10 40.6 0.0 1.7e-09 37.7 0.0 2.2 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|257387133|ref|YP_003176906.1| - 2.2e-10 41.0 0.0 6e-10 39.6 0.0 1.8 1 0 0 1 1 1 1 Helix-hairpin-helix domain UVR PF02151.19 gi|257387133|ref|YP_003176906.1| - 1.6e-07 30.9 4.6 3.3e-07 29.8 2.0 2.4 2 0 0 2 2 2 1 UvrB/uvrC motif GIY-YIG PF01541.24 gi|257387133|ref|YP_003176906.1| - 6.9e-07 29.5 0.0 1.3e-06 28.6 0.0 1.4 1 0 0 1 1 1 1 GIY-YIG catalytic domain 5_3_exonuc PF01367.20 gi|257387133|ref|YP_003176906.1| - 0.004 17.7 0.0 0.12 13.0 0.0 2.9 2 1 0 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold HHH_8 PF14716.6 gi|257387133|ref|YP_003176906.1| - 0.029 14.7 0.0 13 6.2 0.0 2.9 2 0 0 2 2 2 0 Helix-hairpin-helix domain HHH_3 PF12836.7 gi|257387133|ref|YP_003176906.1| - 0.098 12.9 0.0 0.6 10.4 0.0 2.2 1 1 0 1 1 1 0 Helix-hairpin-helix motif Hairy_orange PF07527.13 gi|257387133|ref|YP_003176906.1| - 0.14 12.4 0.0 0.37 11.0 0.0 1.7 1 0 0 1 1 1 0 Hairy Orange AA_permease PF00324.21 gi|257387134|ref|YP_003176907.1| - 3e-43 148.1 41.6 3.7e-43 147.8 41.6 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease_2 PF13520.6 gi|257387134|ref|YP_003176907.1| - 9.4e-42 143.3 43.7 1.2e-41 143.0 43.7 1.1 1 0 0 1 1 1 1 Amino acid permease Spore_permease PF03845.13 gi|257387134|ref|YP_003176907.1| - 0.00018 20.4 12.4 0.00018 20.4 12.4 1.9 2 1 0 2 2 2 1 Spore germination protein AA_permease_C PF13906.6 gi|257387134|ref|YP_003176907.1| - 0.013 15.6 2.7 0.013 15.6 2.7 3.1 3 0 0 3 3 3 0 C-terminus of AA_permease Usp PF00582.26 gi|257387135|ref|YP_003176908.1| - 1.9e-07 31.7 3.6 5.3e-06 27.0 1.2 2.5 2 1 0 2 2 2 2 Universal stress protein family Thioredoxin_6 PF13848.6 gi|257387138|ref|YP_003176911.1| - 0.037 13.9 0.1 0.051 13.5 0.1 1.2 1 0 0 1 1 1 0 Thioredoxin-like domain HSP20 PF00011.21 gi|257387141|ref|YP_003176914.1| - 1.5e-13 50.8 0.0 2.3e-13 50.1 0.0 1.2 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|257387141|ref|YP_003176914.1| - 0.0017 17.8 0.1 0.0034 16.9 0.1 1.5 1 0 0 1 1 1 1 HSP20-like domain found in ArsA HC2 PF07382.11 gi|257387142|ref|YP_003176915.1| - 1e-09 38.8 30.6 2e-08 34.5 16.3 1.9 1 1 1 2 2 2 2 Histone H1-like nucleoprotein HC2 ABC_tran PF00005.27 gi|257387143|ref|YP_003176916.1| - 1e-27 97.3 0.0 1.7e-27 96.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|257387143|ref|YP_003176916.1| - 2.5e-09 37.4 0.3 3.8e-06 26.9 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|257387143|ref|YP_003176916.1| - 1.8e-07 31.8 0.0 5.8e-07 30.1 0.0 1.9 2 0 0 2 2 2 1 Domain of unknown function (DUF4162) SMC_N PF02463.19 gi|257387143|ref|YP_003176916.1| - 0.0026 17.2 0.0 0.34 10.3 0.0 2.2 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain MMR_HSR1 PF01926.23 gi|257387143|ref|YP_003176916.1| - 0.014 15.4 0.1 1.3 9.2 0.0 2.7 1 1 1 2 2 2 0 50S ribosome-binding GTPase AAA_23 PF13476.6 gi|257387143|ref|YP_003176916.1| - 0.015 15.8 0.1 0.029 14.9 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|257387143|ref|YP_003176916.1| - 0.028 14.1 0.0 0.08 12.6 0.0 1.7 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|257387143|ref|YP_003176916.1| - 0.04 13.6 0.0 0.99 9.1 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_29 PF13555.6 gi|257387143|ref|YP_003176916.1| - 0.061 13.1 0.0 0.12 12.2 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Phage_Mu_Gp45 PF06890.12 gi|257387143|ref|YP_003176916.1| - 0.063 13.0 0.1 0.15 11.8 0.1 1.6 1 0 0 1 1 1 0 Bacteriophage Mu Gp45 protein RsgA_GTPase PF03193.16 gi|257387143|ref|YP_003176916.1| - 0.12 12.3 0.0 0.22 11.4 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase ABC2_membrane_2 PF12679.7 gi|257387144|ref|YP_003176917.1| - 1.1e-32 113.6 18.9 9.7e-31 107.1 18.9 2.0 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|257387144|ref|YP_003176917.1| - 1.9e-06 28.0 11.3 1.9e-06 28.0 11.3 2.6 2 1 1 3 3 3 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|257387144|ref|YP_003176917.1| - 1.6e-05 24.2 18.3 1.6e-05 24.2 18.3 1.7 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|257387144|ref|YP_003176917.1| - 0.0029 17.2 13.1 0.0029 17.2 13.1 2.0 2 1 0 2 2 2 1 ABC-2 family transporter protein DUF3464 PF11947.8 gi|257387144|ref|YP_003176917.1| - 0.97 9.2 3.0 2.4 7.9 3.0 1.6 1 0 0 1 1 1 0 Photosynthesis affected mutant 68 DNA_ligase_aden PF01653.18 gi|257387145|ref|YP_003176918.1| - 2.7e-106 355.2 0.0 3.5e-106 354.9 0.0 1.1 1 0 0 1 1 1 1 NAD-dependent DNA ligase adenylation domain DNA_ligase_OB PF03120.16 gi|257387145|ref|YP_003176918.1| - 1.7e-30 104.7 2.2 3e-30 103.9 2.2 1.4 1 0 0 1 1 1 1 NAD-dependent DNA ligase OB-fold domain HHH_2 PF12826.7 gi|257387145|ref|YP_003176918.1| - 4.4e-19 68.3 1.1 4.7e-16 58.6 0.1 3.0 2 0 0 2 2 2 2 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|257387145|ref|YP_003176918.1| - 3.4e-18 66.0 0.1 1.2e-09 38.6 0.1 2.8 2 0 0 2 2 2 2 Helix-hairpin-helix domain BRCT PF00533.26 gi|257387145|ref|YP_003176918.1| - 1.6e-12 47.6 0.0 2.7e-12 46.9 0.0 1.4 1 0 0 1 1 1 1 BRCA1 C Terminus (BRCT) domain HHH PF00633.23 gi|257387145|ref|YP_003176918.1| - 7e-06 25.7 0.8 1.2 9.2 0.0 4.7 5 0 0 5 5 5 2 Helix-hairpin-helix motif DNA_ligase_ZBD PF03119.16 gi|257387145|ref|YP_003176918.1| - 5e-05 23.2 4.0 0.00015 21.7 4.0 1.9 1 0 0 1 1 1 1 NAD-dependent DNA ligase C4 zinc finger domain 5_3_exonuc PF01367.20 gi|257387145|ref|YP_003176918.1| - 0.01 16.4 0.1 2.9 8.6 0.0 3.4 2 1 0 3 3 3 0 5'-3' exonuclease, C-terminal SAM fold Beta_helix PF13229.6 gi|257387146|ref|YP_003176919.1| - 5e-05 23.2 1.6 0.00012 22.0 1.6 1.5 1 1 0 1 1 1 1 Right handed beta helix region Bac_rhodopsin PF01036.18 gi|257387147|ref|YP_003176920.1| - 1.1e-43 149.4 26.1 1.2e-43 149.3 26.1 1.0 1 0 0 1 1 1 1 Bacteriorhodopsin-like protein MCPsignal PF00015.21 gi|257387148|ref|YP_003176921.1| - 1.4e-36 125.9 16.6 1.4e-36 125.9 16.6 4.8 1 1 6 7 7 7 3 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 gi|257387148|ref|YP_003176921.1| - 6.9e-15 55.2 18.7 4.7e-13 49.3 0.7 5.7 4 1 0 4 4 4 2 HAMP domain Laminin_II PF06009.12 gi|257387148|ref|YP_003176921.1| - 4.4e-07 30.0 29.3 0.0059 16.6 0.2 5.1 4 1 1 5 5 5 3 Laminin Domain II DUF948 PF06103.11 gi|257387148|ref|YP_003176921.1| - 1.2e-06 28.7 36.1 0.042 14.1 1.8 6.8 2 2 4 6 6 6 2 Bacterial protein of unknown function (DUF948) RPW8 PF05659.11 gi|257387148|ref|YP_003176921.1| - 0.00041 20.0 2.4 15 5.3 0.0 5.1 3 2 2 6 6 6 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 DUF1664 PF07889.12 gi|257387148|ref|YP_003176921.1| - 0.00099 19.1 20.5 0.14 12.2 1.6 5.2 2 2 4 6 6 6 2 Protein of unknown function (DUF1664) DASH_Duo1 PF08651.10 gi|257387148|ref|YP_003176921.1| - 0.0019 18.0 4.9 7.7 6.4 0.0 5.7 4 1 1 6 6 6 0 DASH complex subunit Duo1 WXG100 PF06013.12 gi|257387148|ref|YP_003176921.1| - 0.0053 17.0 32.5 0.21 11.9 4.2 6.8 3 3 2 5 5 5 3 Proteins of 100 residues with WXG DivIVA PF05103.13 gi|257387148|ref|YP_003176921.1| - 0.0074 16.4 29.2 0.072 13.2 0.4 4.7 3 1 2 5 5 4 2 DivIVA protein COG2 PF06148.11 gi|257387148|ref|YP_003176921.1| - 0.017 15.2 18.2 3 7.9 0.1 5.7 3 2 3 6 6 6 0 COG (conserved oligomeric Golgi) complex component, COG2 AAA_13 PF13166.6 gi|257387148|ref|YP_003176921.1| - 0.03 13.0 20.1 0.065 11.9 7.7 2.4 1 1 1 2 2 2 0 AAA domain TPR_MLP1_2 PF07926.12 gi|257387148|ref|YP_003176921.1| - 0.03 14.4 30.6 0.063 13.3 1.5 4.7 3 2 2 5 5 5 0 TPR/MLP1/MLP2-like protein Syntaxin-6_N PF09177.11 gi|257387148|ref|YP_003176921.1| - 0.032 14.8 0.2 0.032 14.8 0.2 5.2 2 2 1 3 3 2 0 Syntaxin 6, N-terminal BLOC1_2 PF10046.9 gi|257387148|ref|YP_003176921.1| - 0.037 14.3 17.9 0.52 10.6 0.3 5.7 3 2 5 8 8 8 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 IFT57 PF10498.9 gi|257387148|ref|YP_003176921.1| - 0.041 12.9 16.8 1.1 8.2 1.7 4.3 2 2 1 3 3 3 0 Intra-flagellar transport protein 57 Fib_alpha PF08702.10 gi|257387148|ref|YP_003176921.1| - 0.049 13.8 6.5 7.3 6.8 0.1 3.9 3 2 1 4 4 4 0 Fibrinogen alpha/beta chain family CENP-F_leu_zip PF10473.9 gi|257387148|ref|YP_003176921.1| - 0.058 13.4 19.5 0.24 11.4 0.9 3.7 3 1 0 3 3 3 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 BAR PF03114.18 gi|257387148|ref|YP_003176921.1| - 0.083 12.5 13.9 1.2 8.7 3.6 3.5 3 1 1 4 4 4 0 BAR domain Jnk-SapK_ap_N PF09744.9 gi|257387148|ref|YP_003176921.1| - 0.097 12.9 14.9 4 7.6 0.9 4.1 3 2 1 4 4 4 0 JNK_SAPK-associated protein-1 Bacillus_HBL PF05791.11 gi|257387148|ref|YP_003176921.1| - 0.1 12.4 0.3 0.1 12.4 0.3 2.7 3 1 0 3 3 2 0 Bacillus haemolytic enterotoxin (HBL) Sec34 PF04136.15 gi|257387148|ref|YP_003176921.1| - 0.11 12.4 11.4 0.85 9.5 0.4 4.9 4 1 1 5 5 5 0 Sec34-like family DUF4201 PF13870.6 gi|257387148|ref|YP_003176921.1| - 0.2 11.4 2.0 9.7 5.9 0.1 3.5 3 1 0 3 3 3 0 Domain of unknown function (DUF4201) Spc7 PF08317.11 gi|257387148|ref|YP_003176921.1| - 0.21 10.4 25.2 0.18 10.7 2.0 3.6 2 1 2 4 4 4 0 Spc7 kinetochore protein Prominin PF05478.11 gi|257387148|ref|YP_003176921.1| - 0.27 9.2 4.9 1.7 6.5 0.3 2.9 1 1 3 4 4 4 0 Prominin NPV_P10 PF05531.12 gi|257387148|ref|YP_003176921.1| - 0.33 11.5 22.9 1.2 9.6 0.9 5.7 3 2 2 6 6 5 0 Nucleopolyhedrovirus P10 protein Baculo_PEP_C PF04513.12 gi|257387148|ref|YP_003176921.1| - 0.38 10.8 20.7 0.12 12.4 1.2 4.6 3 2 1 5 5 4 0 Baculovirus polyhedron envelope protein, PEP, C terminus Sec20 PF03908.13 gi|257387148|ref|YP_003176921.1| - 0.41 10.6 9.1 9.7 6.2 0.0 4.5 3 1 1 4 4 4 0 Sec20 TACC_C PF05010.14 gi|257387148|ref|YP_003176921.1| - 0.54 10.0 9.6 3.2 7.5 0.1 3.2 2 1 1 3 3 3 0 Transforming acidic coiled-coil-containing protein (TACC), C-terminal DUF16 PF01519.16 gi|257387148|ref|YP_003176921.1| - 0.55 10.8 10.9 31 5.1 0.8 4.4 3 2 0 4 4 3 0 Protein of unknown function DUF16 GAS PF13851.6 gi|257387148|ref|YP_003176921.1| - 0.56 9.5 6.4 5.7 6.2 0.1 3.5 3 0 0 3 3 3 0 Growth-arrest specific micro-tubule binding Sec8_exocyst PF04048.14 gi|257387148|ref|YP_003176921.1| - 0.61 10.0 5.3 20 5.0 0.4 3.8 3 2 1 4 4 4 0 Sec8 exocyst complex component specific domain ISG65-75 PF11727.8 gi|257387148|ref|YP_003176921.1| - 0.65 9.2 32.9 0.37 10.0 7.4 4.1 2 1 2 4 4 4 0 Invariant surface glycoprotein COG6 PF06419.11 gi|257387148|ref|YP_003176921.1| - 0.67 8.1 12.1 0.38 8.9 0.5 3.9 3 1 1 4 4 4 0 Conserved oligomeric complex COG6 CENP-H PF05837.12 gi|257387148|ref|YP_003176921.1| - 0.76 10.2 22.0 1.6 9.2 0.7 4.5 2 1 3 5 5 5 0 Centromere protein H (CENP-H) AIP3 PF03915.13 gi|257387148|ref|YP_003176921.1| - 0.77 8.8 17.9 0.039 13.1 2.9 3.0 1 1 2 3 3 3 0 Actin interacting protein 3 ApoLp-III PF07464.11 gi|257387148|ref|YP_003176921.1| - 0.81 9.8 23.0 0.94 9.6 2.6 4.8 3 2 2 5 5 5 0 Apolipophorin-III precursor (apoLp-III) Mod_r PF07200.13 gi|257387148|ref|YP_003176921.1| - 1 9.5 14.5 5.5 7.1 0.3 4.4 2 2 1 4 4 4 0 Modifier of rudimentary (Mod(r)) protein GARP PF16731.5 gi|257387148|ref|YP_003176921.1| - 1.1 8.9 53.4 0.18 11.5 10.1 3.9 2 1 2 4 4 4 0 Glutamic acid/alanine-rich protein of Trypanosoma CorA PF01544.18 gi|257387148|ref|YP_003176921.1| - 1.2 8.4 20.9 0.022 14.1 2.9 3.8 2 1 1 4 4 4 0 CorA-like Mg2+ transporter protein Filament PF00038.21 gi|257387148|ref|YP_003176921.1| - 1.3 8.5 25.3 0.56 9.7 2.5 4.0 2 2 1 3 3 3 0 Intermediate filament protein DUF2203 PF09969.9 gi|257387148|ref|YP_003176921.1| - 1.4 9.7 26.6 1.9 9.2 2.4 5.1 2 2 2 4 4 4 0 Uncharacterized conserved protein (DUF2203) SNARE PF05739.19 gi|257387148|ref|YP_003176921.1| - 1.7 8.7 9.7 0.45 10.6 0.4 4.2 3 0 0 3 3 3 0 SNARE domain Fzo_mitofusin PF04799.13 gi|257387148|ref|YP_003176921.1| - 1.8 8.1 12.2 31 4.1 0.4 4.5 3 2 1 5 5 5 0 fzo-like conserved region KASH_CCD PF14662.6 gi|257387148|ref|YP_003176921.1| - 1.8 8.3 12.6 0.2 11.5 0.6 3.3 3 1 1 4 4 3 0 Coiled-coil region of CCDC155 or KASH TMPIT PF07851.13 gi|257387148|ref|YP_003176921.1| - 2.4 7.4 8.5 7.3 5.7 0.2 3.3 2 2 1 3 3 3 0 TMPIT-like protein YabA PF06156.13 gi|257387148|ref|YP_003176921.1| - 2.5 8.8 6.7 86 3.9 0.1 4.3 3 2 2 5 5 4 0 Initiation control protein YabA Seryl_tRNA_N PF02403.22 gi|257387148|ref|YP_003176921.1| - 4.2 7.6 21.9 27 5.0 1.5 5.3 2 2 3 5 5 5 0 Seryl-tRNA synthetase N-terminal domain ZapB PF06005.12 gi|257387148|ref|YP_003176921.1| - 5.8 7.4 19.0 8.7 6.9 0.4 5.1 5 2 1 6 6 5 0 Cell division protein ZapB DUF4795 PF16043.5 gi|257387148|ref|YP_003176921.1| - 6.7 6.3 17.3 4.8 6.7 0.5 3.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4795) ATG16 PF08614.11 gi|257387148|ref|YP_003176921.1| - 6.8 6.9 33.7 17 5.6 6.4 4.2 3 2 0 3 3 3 0 Autophagy protein 16 (ATG16) APG6_N PF17675.1 gi|257387148|ref|YP_003176921.1| - 6.8 7.2 28.5 1.6 9.3 1.1 4.3 3 2 1 4 4 4 0 Apg6 coiled-coil region DUF3450 PF11932.8 gi|257387148|ref|YP_003176921.1| - 7.1 5.9 32.9 0.5 9.6 6.0 4.9 2 2 5 7 7 7 0 Protein of unknown function (DUF3450) BAR_2 PF10455.9 gi|257387148|ref|YP_003176921.1| - 7.2 5.7 13.1 0.28 10.3 0.9 3.2 2 1 1 4 4 4 0 Bin/amphiphysin/Rvs domain for vesicular trafficking DUF4618 PF15397.6 gi|257387148|ref|YP_003176921.1| - 7.9 5.8 10.1 4.9 6.5 0.9 3.7 2 2 1 4 4 4 0 Domain of unknown function (DUF4618) Aminotran_5 PF00266.19 gi|257387149|ref|YP_003176922.1| - 2.5e-30 105.7 0.0 3.3e-30 105.3 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V DUF4397 PF14344.6 gi|257387150|ref|YP_003176923.1| - 2.8e-34 118.5 16.3 5.5e-25 88.5 5.7 2.6 2 1 0 2 2 2 2 Domain of unknown function (DUF4397) Y_Y_Y PF07495.13 gi|257387150|ref|YP_003176923.1| - 0.00077 19.4 0.0 0.0049 16.8 0.0 2.2 2 0 0 2 2 2 1 Y_Y_Y domain TcfC PF16967.5 gi|257387150|ref|YP_003176923.1| - 0.027 14.0 0.2 1.2 8.7 0.0 2.7 2 1 0 2 2 2 0 E-set like domain AAA_3 PF07726.11 gi|257387151|ref|YP_003176924.1| - 1.1e-64 216.1 0.0 1.8e-64 215.5 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|257387151|ref|YP_003176924.1| - 6.8e-19 67.5 4.1 1.6e-18 66.3 4.1 1.7 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|257387151|ref|YP_003176924.1| - 3.8e-14 52.9 0.0 8.4e-14 51.7 0.0 1.6 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|257387151|ref|YP_003176924.1| - 4.3e-05 24.0 0.0 0.00042 20.7 0.0 2.4 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|257387151|ref|YP_003176924.1| - 4.3e-05 23.3 0.0 0.0002 21.1 0.0 1.9 1 1 0 1 1 1 1 Sigma-54 interaction domain RuvB_N PF05496.12 gi|257387151|ref|YP_003176924.1| - 0.045 13.5 0.0 0.9 9.3 0.0 2.2 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain Mg_chelatase PF01078.21 gi|257387151|ref|YP_003176924.1| - 0.079 12.3 0.0 4.2 6.7 0.0 2.2 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI MCM PF00493.23 gi|257387151|ref|YP_003176924.1| - 0.13 11.4 0.0 0.2 10.7 0.0 1.3 1 0 0 1 1 1 0 MCM P-loop domain Putative_PNPOx PF01243.20 gi|257387152|ref|YP_003176925.1| - 1.3e-07 31.7 0.0 1.7e-07 31.3 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase F420H2_quin_red PF04075.14 gi|257387152|ref|YP_003176925.1| - 0.071 13.2 0.0 0.088 12.9 0.0 1.2 1 0 0 1 1 1 0 F420H(2)-dependent quinone reductase DUF58 PF01882.18 gi|257387154|ref|YP_003176927.1| - 1.4e-17 63.7 0.3 3.8e-17 62.3 0.3 1.7 1 0 0 1 1 1 1 Protein of unknown function DUF58 DUF11 PF01345.18 gi|257387154|ref|YP_003176927.1| - 3.1e-12 46.6 3.0 3.1e-12 46.6 3.0 2.5 1 1 0 2 2 2 1 Domain of unknown function DUF11 NPCBM_assoc PF10633.9 gi|257387154|ref|YP_003176927.1| - 4.2e-09 36.5 0.3 4.2e-09 36.5 0.3 2.7 3 0 0 3 3 3 1 NPCBM-associated, NEW3 domain of alpha-galactosidase TRAP_beta PF05753.14 gi|257387154|ref|YP_003176927.1| - 0.00016 21.1 0.0 0.00025 20.5 0.0 1.2 1 0 0 1 1 1 1 Translocon-associated protein beta (TRAPB) CARDB PF07705.11 gi|257387154|ref|YP_003176927.1| - 0.016 15.4 0.0 0.038 14.3 0.0 1.6 1 0 0 1 1 1 0 CARDB BsuPI PF12690.7 gi|257387154|ref|YP_003176927.1| - 0.2 11.7 0.0 12 6.0 0.0 2.3 1 1 1 2 2 2 0 Intracellular proteinase inhibitor TraC_F_IV PF11130.8 gi|257387155|ref|YP_003176928.1| - 0.0095 15.6 0.0 0.013 15.1 0.0 1.2 1 0 0 1 1 1 1 F pilus assembly Type-IV secretion system for plasmid transfer Transglut_core PF01841.19 gi|257387156|ref|YP_003176929.1| - 8.3e-28 97.1 0.2 8.3e-28 97.1 0.2 2.2 2 0 0 2 2 2 1 Transglutaminase-like superfamily DUF3488 PF11992.8 gi|257387156|ref|YP_003176929.1| - 3.9e-08 32.6 0.1 3.9e-08 32.6 0.1 2.4 2 0 0 2 2 2 1 Domain of unknown function (DUF3488) DUF4129 PF13559.6 gi|257387156|ref|YP_003176929.1| - 0.0013 18.9 5.3 0.0013 18.9 5.3 4.8 4 2 0 4 4 4 1 Domain of unknown function (DUF4129) CarbopepD_reg_2 PF13715.6 gi|257387156|ref|YP_003176929.1| - 0.032 14.2 2.8 18 5.4 0.1 3.5 3 0 0 3 3 3 0 CarboxypepD_reg-like domain DUF4198 PF10670.9 gi|257387156|ref|YP_003176929.1| - 0.038 14.4 5.0 0.23 11.8 0.0 3.6 4 0 0 4 4 4 0 Domain of unknown function (DUF4198) BiPBP_C PF06832.12 gi|257387156|ref|YP_003176929.1| - 0.055 13.5 0.1 4.8 7.3 0.0 3.3 3 0 0 3 3 3 0 Penicillin-Binding Protein C-terminus Family Transglut_core3 PF13471.6 gi|257387156|ref|YP_003176929.1| - 0.067 13.1 0.0 0.067 13.1 0.0 3.6 3 1 0 3 3 3 0 Transglutaminase-like superfamily bMG3 PF11974.8 gi|257387156|ref|YP_003176929.1| - 0.24 11.5 7.9 0.44 10.6 0.2 3.4 3 0 0 3 3 3 0 Bacterial alpha-2-macroglobulin MG3 domain DUF4153 PF13687.6 gi|257387156|ref|YP_003176929.1| - 0.41 10.3 1.2 0.82 9.3 1.2 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4153) PEGA PF08308.11 gi|257387156|ref|YP_003176929.1| - 0.92 9.5 2.9 14 5.6 0.4 2.9 2 0 0 2 2 2 0 PEGA domain Cys_Met_Meta_PP PF01053.20 gi|257387157|ref|YP_003176930.1| - 1.2e-128 428.9 0.0 1.4e-128 428.7 0.0 1.0 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Aminotran_1_2 PF00155.21 gi|257387157|ref|YP_003176930.1| - 1.7e-06 27.4 0.0 2.4e-06 26.9 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|257387157|ref|YP_003176930.1| - 1e-05 25.0 0.1 1.7e-05 24.3 0.1 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_5 PF00266.19 gi|257387157|ref|YP_003176930.1| - 5.9e-05 22.2 0.0 9.3e-05 21.5 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V Abhydrolase_1 PF00561.20 gi|257387158|ref|YP_003176931.1| - 1.4e-29 103.5 0.2 1.7e-29 103.2 0.2 1.1 1 0 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|257387158|ref|YP_003176931.1| - 0.00097 18.5 0.0 0.0015 17.8 0.0 1.2 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Esterase PF00756.20 gi|257387158|ref|YP_003176931.1| - 0.0086 15.7 0.0 0.014 15.1 0.0 1.4 1 0 0 1 1 1 1 Putative esterase SBP_bac_8 PF13416.6 gi|257387158|ref|YP_003176931.1| - 0.073 12.9 0.0 0.44 10.3 0.0 2.0 2 0 0 2 2 2 0 Bacterial extracellular solute-binding protein HypA PF01155.19 gi|257387159|ref|YP_003176932.1| - 0.0032 17.5 0.0 0.0039 17.2 0.0 1.2 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ribbon_3 PF13248.6 gi|257387159|ref|YP_003176932.1| - 0.02 14.3 2.1 1.2 8.7 0.7 2.2 2 0 0 2 2 2 0 zinc-ribbon domain PRC PF05239.16 gi|257387159|ref|YP_003176932.1| - 0.048 13.8 0.1 0.073 13.2 0.1 1.4 1 0 0 1 1 1 0 PRC-barrel domain zf-CCHC_6 PF15288.6 gi|257387159|ref|YP_003176932.1| - 0.075 12.9 3.9 0.09 12.6 0.2 2.1 2 0 0 2 2 2 0 Zinc knuckle zinc_ribbon_2 PF13240.6 gi|257387159|ref|YP_003176932.1| - 0.17 11.6 2.2 1.1 9.1 2.1 2.0 1 1 0 1 1 1 0 zinc-ribbon domain NRDD PF13597.6 gi|257387159|ref|YP_003176932.1| - 0.25 10.1 0.3 0.34 9.6 0.3 1.1 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase Rubredoxin_2 PF18073.1 gi|257387159|ref|YP_003176932.1| - 0.35 10.6 6.2 0.37 10.6 0.5 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain Zn-ribbon_8 PF09723.10 gi|257387159|ref|YP_003176932.1| - 0.5 10.5 3.0 1.2 9.3 3.1 1.6 1 1 0 1 1 1 0 Zinc ribbon domain Anti-TRAP PF15777.5 gi|257387159|ref|YP_003176932.1| - 0.57 10.2 4.8 1.2 9.1 4.8 1.5 1 0 0 1 1 1 0 Tryptophan RNA-binding attenuator protein inhibitory protein HscB_4_cys PF18256.1 gi|257387159|ref|YP_003176932.1| - 1.9 8.4 7.1 27 4.7 7.7 2.3 1 1 1 2 2 2 0 Co-chaperone HscB tetracysteine metal binding motif Rubredoxin PF00301.20 gi|257387159|ref|YP_003176932.1| - 7.6 6.6 12.8 0.21 11.6 1.5 2.6 2 1 1 3 3 3 0 Rubredoxin ApbA_C PF08546.11 gi|257387161|ref|YP_003176934.1| - 4.8e-33 114.0 0.1 7.8e-33 113.3 0.1 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA C terminal ApbA PF02558.16 gi|257387161|ref|YP_003176934.1| - 1.5e-25 89.6 0.1 2.4e-25 88.9 0.1 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Sacchrp_dh_NADP PF03435.18 gi|257387161|ref|YP_003176934.1| - 0.083 13.2 3.2 0.1 12.9 0.7 2.3 2 1 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain LPG_synthase_TM PF03706.13 gi|257387162|ref|YP_003176935.1| - 9.6e-45 153.4 41.4 1.1e-44 153.2 41.4 1.0 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region Sulfatase PF00884.23 gi|257387163|ref|YP_003176936.1| - 1.4e-46 159.3 0.5 1.9e-46 158.9 0.5 1.2 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 gi|257387163|ref|YP_003176936.1| - 3.4e-12 46.6 3.9 1.5e-10 41.3 3.8 2.4 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase DUF1501 PF07394.12 gi|257387163|ref|YP_003176936.1| - 0.0029 16.7 0.2 0.005 15.9 0.2 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF1501) DUF229 PF02995.17 gi|257387163|ref|YP_003176936.1| - 0.034 12.7 0.0 0.043 12.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF229) HEM4 PF02602.15 gi|257387164|ref|YP_003176937.1| - 2.8e-41 141.4 2.8 3.3e-41 141.2 2.8 1.0 1 0 0 1 1 1 1 Uroporphyrinogen-III synthase HemD DAHP_snth_FXD PF18152.1 gi|257387164|ref|YP_003176937.1| - 0.021 14.6 0.0 0.048 13.5 0.0 1.6 1 0 0 1 1 1 0 DAHP synthase ferredoxin-like domain TP_methylase PF00590.20 gi|257387165|ref|YP_003176938.1| - 5.2e-55 186.7 2.3 6.6e-55 186.3 2.3 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Radical_SAM PF04055.21 gi|257387165|ref|YP_003176938.1| - 0.023 15.1 0.1 0.12 12.8 0.1 2.1 1 1 0 1 1 1 0 Radical SAM superfamily Porphobil_deam PF01379.20 gi|257387166|ref|YP_003176939.1| - 3.2e-65 219.5 0.6 1.9e-52 177.7 0.1 2.1 2 0 0 2 2 2 2 Porphobilinogen deaminase, dipyromethane cofactor binding domain Porphobil_deamC PF03900.15 gi|257387166|ref|YP_003176939.1| - 5.5e-08 33.1 0.1 1.6e-07 31.6 0.1 1.8 1 0 0 1 1 1 1 Porphobilinogen deaminase, C-terminal domain CarS-like PF01864.17 gi|257387167|ref|YP_003176940.1| - 2.9e-46 157.7 0.4 3.4e-46 157.4 0.4 1.0 1 0 0 1 1 1 1 CDP-archaeol synthase CTP_transf_1 PF01148.20 gi|257387167|ref|YP_003176940.1| - 0.00025 20.9 1.2 0.00025 20.9 1.2 1.7 1 1 0 1 1 1 1 Cytidylyltransferase family Pro_dh PF01619.18 gi|257387168|ref|YP_003176941.1| - 1.6e-23 83.7 0.0 3.9e-23 82.4 0.0 1.6 1 1 0 1 1 1 1 Proline dehydrogenase DUF502 PF04367.13 gi|257387169|ref|YP_003176942.1| - 1.9e-18 66.3 0.6 3.5e-18 65.4 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF502) Fijivirus_P9-2 PF06837.11 gi|257387169|ref|YP_003176942.1| - 0.017 14.6 0.1 0.034 13.6 0.1 1.5 1 0 0 1 1 1 0 Fijivirus P9-2 protein DUF4013 PF13197.6 gi|257387169|ref|YP_003176942.1| - 0.14 12.0 7.4 0.24 11.2 6.8 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF4013) DUF4731 PF15875.5 gi|257387169|ref|YP_003176942.1| - 1.9 8.7 5.0 1.3 9.3 0.1 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4731) Aminotran_4 PF01063.19 gi|257387170|ref|YP_003176943.1| - 4.8e-47 160.7 0.0 5.6e-47 160.5 0.0 1.0 1 0 0 1 1 1 1 Amino-transferase class IV DHBP_synthase PF00926.19 gi|257387172|ref|YP_003176945.1| - 3.7e-55 186.5 0.0 4.2e-55 186.3 0.0 1.0 1 0 0 1 1 1 1 3,4-dihydroxy-2-butanone 4-phosphate synthase CTP-dep_RFKase PF01982.16 gi|257387173|ref|YP_003176946.1| - 1.2e-45 154.5 0.0 1.8e-45 154.0 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF120 HTH_20 PF12840.7 gi|257387173|ref|YP_003176946.1| - 1.6e-06 28.1 0.7 4.4e-06 26.7 0.7 1.7 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|257387173|ref|YP_003176946.1| - 4.2e-05 23.0 0.1 7.2e-05 22.3 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|257387173|ref|YP_003176946.1| - 0.00065 19.5 0.1 0.0011 18.8 0.1 1.4 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|257387173|ref|YP_003176946.1| - 0.0011 18.8 0.1 0.002 18.0 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|257387173|ref|YP_003176946.1| - 0.0019 18.2 0.6 0.0058 16.6 0.5 1.9 2 1 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|257387173|ref|YP_003176946.1| - 0.0022 17.8 0.4 0.0053 16.5 0.4 1.7 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|257387173|ref|YP_003176946.1| - 0.0091 15.9 0.1 0.016 15.1 0.1 1.4 1 0 0 1 1 1 1 HTH domain HTH_28 PF13518.6 gi|257387173|ref|YP_003176946.1| - 0.046 13.9 0.1 2.3 8.4 0.0 2.3 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_1 PF00126.27 gi|257387173|ref|YP_003176946.1| - 0.07 13.1 0.4 0.18 11.8 0.4 1.6 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family HTH_27 PF13463.6 gi|257387173|ref|YP_003176946.1| - 0.078 13.5 0.1 0.17 12.4 0.1 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_DeoR PF08220.12 gi|257387173|ref|YP_003176946.1| - 0.099 12.4 0.1 0.2 11.4 0.1 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain PHP PF02811.19 gi|257387176|ref|YP_003176949.1| - 4.6e-07 30.3 0.0 4.6e-07 30.3 0.0 1.2 1 0 0 1 1 1 1 PHP domain PHP_C PF13263.6 gi|257387176|ref|YP_003176949.1| - 0.0038 17.0 0.1 0.009 15.8 0.1 1.6 1 0 0 1 1 1 1 PHP-associated Resolvase PF00239.21 gi|257387176|ref|YP_003176949.1| - 0.15 12.2 0.0 0.45 10.6 0.1 1.8 1 1 1 2 2 2 0 Resolvase, N terminal domain Cupin_2 PF07883.11 gi|257387178|ref|YP_003176951.1| - 7.9e-14 51.1 0.2 1.2e-13 50.5 0.2 1.3 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|257387178|ref|YP_003176951.1| - 1.4e-05 25.0 0.0 1.9e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_3 PF05899.12 gi|257387178|ref|YP_003176951.1| - 0.037 13.7 0.2 0.071 12.8 0.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF861) Pirin PF02678.16 gi|257387178|ref|YP_003176951.1| - 0.048 13.6 0.0 0.069 13.1 0.0 1.2 1 0 0 1 1 1 0 Pirin DUF2387 PF09526.10 gi|257387178|ref|YP_003176951.1| - 0.12 12.5 1.2 0.21 11.8 1.2 1.3 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) Zn-ribbon_8 PF09723.10 gi|257387178|ref|YP_003176951.1| - 0.14 12.3 1.9 0.53 10.4 1.8 1.9 1 1 1 2 2 2 0 Zinc ribbon domain GATA PF00320.27 gi|257387178|ref|YP_003176951.1| - 0.21 11.2 0.7 0.36 10.5 0.7 1.3 1 0 0 1 1 1 0 GATA zinc finger DUF1884 PF08967.10 gi|257387179|ref|YP_003176952.1| - 0.026 14.7 4.8 25 5.2 0.1 3.6 1 1 2 3 3 3 0 Domain of unknown function (DUF1884) Reprolysin_3 PF13582.6 gi|257387179|ref|YP_003176952.1| - 0.071 13.6 0.0 0.15 12.5 0.0 1.6 1 0 0 1 1 1 0 Metallo-peptidase family M12B Reprolysin-like Acyl-CoA_dh_1 PF00441.24 gi|257387180|ref|YP_003176953.1| - 1.8e-34 119.1 2.8 2.5e-34 118.7 2.8 1.2 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|257387180|ref|YP_003176953.1| - 1.6e-25 89.9 0.1 4.1e-25 88.6 0.0 1.8 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|257387180|ref|YP_003176953.1| - 3.1e-20 72.2 0.0 2.6e-19 69.2 0.0 2.2 1 1 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|257387180|ref|YP_003176953.1| - 5.6e-13 49.3 3.7 9.3e-13 48.6 3.7 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain GATase PF00117.28 gi|257387181|ref|YP_003176954.1| - 3.5e-21 75.8 0.0 4.8e-21 75.4 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|257387181|ref|YP_003176954.1| - 4.8e-07 29.8 0.1 7.1e-06 25.9 0.1 2.6 1 1 0 1 1 1 1 Peptidase C26 Abhydrolase_1 PF00561.20 gi|257387182|ref|YP_003176955.1| - 4.6e-17 62.5 0.1 1.7e-08 34.4 0.1 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|257387182|ref|YP_003176955.1| - 4.9e-13 48.9 0.1 6.8e-13 48.4 0.1 1.1 1 0 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 gi|257387182|ref|YP_003176955.1| - 2.6e-12 47.8 17.7 3.3e-12 47.5 17.7 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family FSH1 PF03959.13 gi|257387182|ref|YP_003176955.1| - 0.0032 17.2 0.0 0.15 11.7 0.0 2.1 1 1 1 2 2 2 1 Serine hydrolase (FSH1) Esterase_phd PF10503.9 gi|257387182|ref|YP_003176955.1| - 0.0062 16.0 2.3 0.1 12.1 0.0 2.2 2 0 0 2 2 2 1 Esterase PHB depolymerase Abhydrolase_4 PF08386.10 gi|257387182|ref|YP_003176955.1| - 0.011 15.8 0.0 0.018 15.2 0.0 1.3 1 0 0 1 1 1 0 TAP-like protein Peptidase_S9 PF00326.21 gi|257387182|ref|YP_003176955.1| - 0.013 15.0 0.2 0.032 13.7 0.2 1.8 1 1 0 1 1 1 0 Prolyl oligopeptidase family NAD_binding_8 PF13450.6 gi|257387182|ref|YP_003176955.1| - 0.022 15.0 0.3 0.051 13.8 0.3 1.7 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Phage_cap_E PF03864.15 gi|257387182|ref|YP_003176955.1| - 0.029 13.6 0.1 0.041 13.1 0.1 1.1 1 0 0 1 1 1 0 Phage major capsid protein E DUF4013 PF13197.6 gi|257387183|ref|YP_003176956.1| - 1e-14 54.7 10.0 1e-14 54.7 10.0 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF4013) Nudix_N_2 PF14803.6 gi|257387183|ref|YP_003176956.1| - 0.0036 17.2 2.7 0.14 12.1 0.2 2.4 2 0 0 2 2 2 2 Nudix N-terminal DZR PF12773.7 gi|257387183|ref|YP_003176956.1| - 0.01 15.8 1.6 0.017 15.1 1.6 1.3 1 0 0 1 1 1 0 Double zinc ribbon DNA_ligase_ZBD PF03119.16 gi|257387183|ref|YP_003176956.1| - 0.092 12.8 1.7 0.24 11.4 0.4 2.2 2 0 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain Zn-ribbon_8 PF09723.10 gi|257387183|ref|YP_003176956.1| - 0.12 12.5 1.8 0.25 11.5 1.8 1.5 1 0 0 1 1 1 0 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|257387183|ref|YP_003176956.1| - 0.15 11.5 5.1 0.045 13.2 2.1 1.7 2 0 0 2 2 2 0 zinc-ribbon domain tRNA-synt_2c PF01411.19 gi|257387184|ref|YP_003176957.1| - 1.5e-119 400.0 0.0 2e-119 399.6 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class II (A) DHHA1 PF02272.19 gi|257387184|ref|YP_003176957.1| - 1.4e-16 61.2 3.4 2.9e-16 60.1 3.4 1.6 1 0 0 1 1 1 1 DHHA1 domain tRNA_SAD PF07973.14 gi|257387184|ref|YP_003176957.1| - 1.8e-12 47.1 0.5 4e-12 46.0 0.5 1.6 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain TrbI_Ftype PF09677.10 gi|257387184|ref|YP_003176957.1| - 0.02 15.2 1.4 0.1 12.9 0.2 2.6 3 0 0 3 3 3 0 Type-F conjugative transfer system protein (TrbI_Ftype) Rep_fac_C PF08542.11 gi|257387186|ref|YP_003176959.1| - 1e-23 83.5 0.0 2.1e-23 82.5 0.0 1.6 1 0 0 1 1 1 1 Replication factor C C-terminal domain AAA PF00004.29 gi|257387186|ref|YP_003176959.1| - 6.8e-19 68.6 0.0 2.3e-18 66.9 0.0 1.8 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) DNA_pol3_delta2 PF13177.6 gi|257387186|ref|YP_003176959.1| - 1.7e-16 60.4 0.0 3.8e-11 43.0 0.0 2.1 1 1 1 2 2 2 2 DNA polymerase III, delta subunit AAA_16 PF13191.6 gi|257387186|ref|YP_003176959.1| - 3.5e-08 34.0 1.0 4e-05 24.0 0.0 3.0 2 1 1 3 3 3 1 AAA ATPase domain RuvB_N PF05496.12 gi|257387186|ref|YP_003176959.1| - 4.8e-08 32.9 0.0 6.3e-07 29.3 0.0 2.2 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain Rad17 PF03215.15 gi|257387186|ref|YP_003176959.1| - 1.8e-07 31.3 0.0 3.1e-07 30.5 0.0 1.4 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_14 PF13173.6 gi|257387186|ref|YP_003176959.1| - 6.7e-06 26.2 0.0 1.2e-05 25.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_assoc_2 PF16193.5 gi|257387186|ref|YP_003176959.1| - 4.3e-05 23.8 0.3 0.00013 22.2 0.1 2.0 2 0 0 2 2 1 1 AAA C-terminal domain AAA_22 PF13401.6 gi|257387186|ref|YP_003176959.1| - 0.00022 21.5 0.2 0.14 12.4 0.1 2.3 1 1 1 2 2 2 1 AAA domain ResIII PF04851.15 gi|257387186|ref|YP_003176959.1| - 0.0003 20.9 0.0 0.0032 17.5 0.0 2.1 1 1 1 2 2 2 1 Type III restriction enzyme, res subunit DNA_pol3_delta PF06144.13 gi|257387186|ref|YP_003176959.1| - 0.00037 20.3 0.0 0.00071 19.4 0.0 1.5 2 0 0 2 2 1 1 DNA polymerase III, delta subunit Sigma54_activat PF00158.26 gi|257387186|ref|YP_003176959.1| - 0.00044 20.0 0.0 0.014 15.1 0.0 2.3 1 1 0 1 1 1 1 Sigma-54 interaction domain Mg_chelatase PF01078.21 gi|257387186|ref|YP_003176959.1| - 0.00049 19.6 0.0 0.098 12.0 0.0 2.2 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_7 PF12775.7 gi|257387186|ref|YP_003176959.1| - 0.00099 18.7 0.0 0.0016 18.0 0.0 1.4 1 0 0 1 1 1 1 P-loop containing dynein motor region AAA_3 PF07726.11 gi|257387186|ref|YP_003176959.1| - 0.0019 18.0 0.0 0.004 17.0 0.0 1.5 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) TIP49 PF06068.13 gi|257387186|ref|YP_003176959.1| - 0.0021 17.3 0.0 0.011 14.9 0.0 2.0 1 1 1 2 2 2 1 TIP49 P-loop domain IstB_IS21 PF01695.17 gi|257387186|ref|YP_003176959.1| - 0.0022 17.8 0.0 0.0046 16.7 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_18 PF13238.6 gi|257387186|ref|YP_003176959.1| - 0.0024 18.4 0.0 0.011 16.3 0.0 2.1 1 1 1 2 2 2 1 AAA domain AAA_24 PF13479.6 gi|257387186|ref|YP_003176959.1| - 0.0034 17.1 0.0 0.0067 16.2 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_5 PF07728.14 gi|257387186|ref|YP_003176959.1| - 0.008 16.2 0.0 0.04 13.9 0.0 2.0 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_30 PF13604.6 gi|257387186|ref|YP_003176959.1| - 0.0099 15.6 0.1 0.026 14.2 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.6 gi|257387186|ref|YP_003176959.1| - 0.01 15.4 0.1 0.031 13.8 0.0 1.8 2 0 0 2 2 2 0 AAA domain T2SSE PF00437.20 gi|257387186|ref|YP_003176959.1| - 0.013 14.6 0.0 0.023 13.8 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein DUF3400 PF11880.8 gi|257387186|ref|YP_003176959.1| - 0.014 14.9 0.0 0.04 13.4 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF3400) PhoH PF02562.16 gi|257387186|ref|YP_003176959.1| - 0.016 14.6 0.0 0.092 12.2 0.0 2.1 2 0 0 2 2 2 0 PhoH-like protein AAA_2 PF07724.14 gi|257387186|ref|YP_003176959.1| - 0.035 14.2 0.0 0.097 12.8 0.0 1.8 1 1 1 2 2 1 0 AAA domain (Cdc48 subfamily) Sigma54_activ_2 PF14532.6 gi|257387186|ref|YP_003176959.1| - 0.045 13.9 0.0 0.11 12.7 0.0 1.6 1 1 0 1 1 1 0 Sigma-54 interaction domain Glyco_hydro_114 PF03537.13 gi|257387186|ref|YP_003176959.1| - 0.047 13.0 0.0 0.083 12.2 0.0 1.3 1 0 0 1 1 1 0 Glycoside-hydrolase family GH114 Viral_helicase1 PF01443.18 gi|257387186|ref|YP_003176959.1| - 0.053 13.3 0.0 0.077 12.7 0.0 1.2 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase DUF815 PF05673.13 gi|257387186|ref|YP_003176959.1| - 0.054 12.7 0.0 0.08 12.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF815) PEPCK_ATP PF01293.20 gi|257387186|ref|YP_003176959.1| - 0.066 11.9 0.0 0.1 11.2 0.0 1.2 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxykinase NB-ARC PF00931.22 gi|257387186|ref|YP_003176959.1| - 0.095 11.9 0.0 0.15 11.2 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain NACHT PF05729.12 gi|257387186|ref|YP_003176959.1| - 0.12 12.3 0.0 0.86 9.5 0.0 2.1 2 1 0 2 2 2 0 NACHT domain RNA_helicase PF00910.22 gi|257387186|ref|YP_003176959.1| - 0.13 12.6 0.0 0.26 11.7 0.0 1.5 1 0 0 1 1 1 0 RNA helicase DUF87 PF01935.17 gi|257387186|ref|YP_003176959.1| - 0.15 12.1 0.0 1.2 9.2 0.0 2.1 1 1 0 2 2 2 0 Helicase HerA, central domain AAA_33 PF13671.6 gi|257387186|ref|YP_003176959.1| - 0.17 12.1 0.0 0.3 11.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|257387186|ref|YP_003176959.1| - 0.18 11.6 0.0 0.33 10.7 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain Methyltransf_11 PF08241.12 gi|257387187|ref|YP_003176960.1| - 8.9e-24 84.0 0.0 1.8e-23 83.0 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|257387187|ref|YP_003176960.1| - 3.4e-21 75.8 0.0 6.6e-21 74.8 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|257387187|ref|YP_003176960.1| - 9.6e-18 64.4 0.0 1.2e-17 64.1 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|257387187|ref|YP_003176960.1| - 3.6e-13 49.7 0.0 4.7e-13 49.3 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|257387187|ref|YP_003176960.1| - 1.1e-10 42.1 0.0 1.8e-10 41.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|257387187|ref|YP_003176960.1| - 7.7e-10 38.5 0.0 1.1e-09 38.0 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_9 PF08003.11 gi|257387187|ref|YP_003176960.1| - 5.4e-07 28.8 0.0 8e-07 28.3 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_32 PF13679.6 gi|257387187|ref|YP_003176960.1| - 3.3e-05 23.9 0.0 4.8e-05 23.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain N6_N4_Mtase PF01555.18 gi|257387187|ref|YP_003176960.1| - 0.00055 19.7 0.0 0.17 11.6 0.0 2.2 2 0 0 2 2 2 2 DNA methylase Methyltransf_8 PF05148.15 gi|257387187|ref|YP_003176960.1| - 0.00079 19.3 0.0 0.003 17.4 0.0 1.8 1 1 0 1 1 1 1 Hypothetical methyltransferase PCMT PF01135.19 gi|257387187|ref|YP_003176960.1| - 0.0031 17.3 0.0 0.0054 16.5 0.0 1.4 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_29 PF03141.16 gi|257387187|ref|YP_003176960.1| - 0.0035 16.0 0.0 0.0048 15.5 0.0 1.3 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase MTS PF05175.14 gi|257387187|ref|YP_003176960.1| - 0.0037 16.8 0.0 0.051 13.1 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase small domain MetW PF07021.12 gi|257387187|ref|YP_003176960.1| - 0.0046 16.6 0.0 0.0095 15.5 0.0 1.5 1 1 0 1 1 1 1 Methionine biosynthesis protein MetW FtsJ PF01728.19 gi|257387187|ref|YP_003176960.1| - 0.0052 16.9 0.0 0.12 12.5 0.0 2.1 1 1 1 2 2 2 1 FtsJ-like methyltransferase PrmA PF06325.13 gi|257387187|ref|YP_003176960.1| - 0.074 12.4 0.0 0.13 11.6 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) DUF4281 PF14108.6 gi|257387188|ref|YP_003176961.1| - 0.00092 19.6 7.3 0.11 12.9 0.9 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF4281) TatC PF00902.18 gi|257387188|ref|YP_003176961.1| - 0.0087 15.9 0.6 0.0087 15.9 0.6 2.4 2 1 0 2 2 2 1 Sec-independent protein translocase protein (TatC) PrgI PF12666.7 gi|257387188|ref|YP_003176961.1| - 0.79 10.5 7.3 0.48 11.2 0.6 2.3 2 1 0 2 2 2 0 PrgI family protein DUF2391 PF09622.10 gi|257387189|ref|YP_003176962.1| - 5.5e-05 22.6 3.7 8.3e-05 22.0 3.7 1.3 1 1 0 1 1 1 1 Putative integral membrane protein (DUF2391) DUF3021 PF11457.8 gi|257387189|ref|YP_003176962.1| - 0.9 9.9 4.5 6.9 7.0 0.5 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF3021) ATPase PF06745.13 gi|257387190|ref|YP_003176963.1| - 0.00016 21.1 0.1 0.00021 20.8 0.1 1.1 1 0 0 1 1 1 1 KaiC Glyco_trans_1_2 PF13524.6 gi|257387190|ref|YP_003176963.1| - 0.0027 18.1 0.3 2.4 8.6 0.0 3.1 2 1 1 3 3 3 1 Glycosyl transferases group 1 Type2_restr_D3 PF16902.5 gi|257387190|ref|YP_003176963.1| - 0.11 12.5 0.4 0.2 11.6 0.4 1.5 1 0 0 1 1 1 0 Type-2 restriction enzyme D3 domain RecR PF02132.15 gi|257387191|ref|YP_003176964.1| - 0.0023 17.5 1.5 0.0036 16.8 1.5 1.4 1 1 0 1 1 1 1 RecR protein DZR PF12773.7 gi|257387191|ref|YP_003176964.1| - 0.003 17.6 0.4 0.0043 17.1 0.4 1.3 1 1 0 1 1 1 1 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|257387191|ref|YP_003176964.1| - 0.011 15.8 1.2 0.019 15.1 1.2 1.4 1 1 0 1 1 1 0 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|257387191|ref|YP_003176964.1| - 0.013 14.9 1.3 2.2 7.8 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Terminase_GpA PF05876.12 gi|257387191|ref|YP_003176964.1| - 0.14 10.7 0.1 0.14 10.7 0.1 1.0 1 0 0 1 1 1 0 Phage terminase large subunit (GpA) zinc_ribbon_2 PF13240.6 gi|257387191|ref|YP_003176964.1| - 0.19 11.5 5.3 1.9 8.3 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.9 gi|257387191|ref|YP_003176964.1| - 0.38 10.9 5.0 0.46 10.6 1.2 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 PGM_PMM_I PF02878.16 gi|257387192|ref|YP_003176965.1| - 3.4e-30 104.6 0.0 6e-30 103.8 0.0 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_III PF02880.16 gi|257387192|ref|YP_003176965.1| - 2.7e-18 66.2 0.0 6.7e-18 64.9 0.0 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_II PF02879.16 gi|257387192|ref|YP_003176965.1| - 4.8e-18 65.7 0.3 1.2e-17 64.4 0.3 1.7 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.20 gi|257387192|ref|YP_003176965.1| - 1e-11 44.8 1.1 1e-11 44.8 1.1 2.6 3 0 0 3 3 3 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain Rib_5-P_isom_A PF06026.14 gi|257387195|ref|YP_003176968.1| - 1e-58 197.8 0.0 1.2e-58 197.5 0.0 1.1 1 0 0 1 1 1 1 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DeoRC PF00455.22 gi|257387195|ref|YP_003176968.1| - 3.2e-05 23.9 0.2 0.00014 21.8 0.1 1.9 2 0 0 2 2 2 1 DeoR C terminal sensor domain Sugar-bind PF04198.13 gi|257387195|ref|YP_003176968.1| - 0.065 12.4 0.1 0.1 11.7 0.1 1.2 1 0 0 1 1 1 0 Putative sugar-binding domain DUF1931 PF09123.11 gi|257387196|ref|YP_003176969.1| - 0.00077 19.6 0.9 0.00086 19.4 0.9 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF1931) CBFD_NFYB_HMF PF00808.23 gi|257387196|ref|YP_003176969.1| - 0.0054 17.0 0.1 0.0067 16.7 0.1 1.4 1 1 0 1 1 1 1 Histone-like transcription factor (CBF/NF-Y) and archaeal histone Histone PF00125.24 gi|257387196|ref|YP_003176969.1| - 0.053 13.9 0.1 0.053 13.9 0.1 1.1 1 0 0 1 1 1 0 Core histone H2A/H2B/H3/H4 TFIID_20kDa PF03847.13 gi|257387196|ref|YP_003176969.1| - 0.088 13.3 0.8 0.1 13.1 0.8 1.5 1 1 0 1 1 1 0 Transcription initiation factor TFIID subunit A AIRC PF00731.20 gi|257387197|ref|YP_003176970.1| - 2.9e-14 52.9 4.2 2.9e-14 52.9 4.2 2.0 2 0 0 2 2 2 1 AIR carboxylase zf-ribbon_3 PF13248.6 gi|257387198|ref|YP_003176971.1| - 0.0046 16.3 2.1 0.29 10.6 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.7 gi|257387198|ref|YP_003176971.1| - 0.0065 16.5 0.5 0.0086 16.1 0.5 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-tcix PF14952.6 gi|257387198|ref|YP_003176971.1| - 0.018 14.6 0.9 0.21 11.3 0.2 2.1 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding Zn-ribbon_8 PF09723.10 gi|257387198|ref|YP_003176971.1| - 0.024 14.7 2.8 0.055 13.6 2.8 1.6 1 1 0 1 1 1 0 Zinc ribbon domain zf-C4_Topoisom PF01396.19 gi|257387198|ref|YP_003176971.1| - 0.043 13.6 0.6 6.6 6.6 0.0 2.1 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger DUF3268 PF11672.8 gi|257387198|ref|YP_003176971.1| - 0.048 14.0 0.2 0.05 13.9 0.2 1.1 1 0 0 1 1 1 0 zinc-finger-containing domain zinc_ribbon_2 PF13240.6 gi|257387198|ref|YP_003176971.1| - 0.05 13.3 1.5 1.8 8.4 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-RING_7 PF02591.15 gi|257387198|ref|YP_003176971.1| - 0.054 13.7 1.3 7.5 6.8 0.2 2.2 2 0 0 2 2 2 0 C4-type zinc ribbon domain Prim_Zn_Ribbon PF08273.12 gi|257387198|ref|YP_003176971.1| - 0.77 10.1 5.2 3.5 8.0 5.2 1.9 1 1 0 1 1 1 0 Zinc-binding domain of primase-helicase GIY-YIG PF01541.24 gi|257387199|ref|YP_003176972.1| - 2.5e-17 62.9 0.1 2.7e-17 62.8 0.1 1.0 1 0 0 1 1 1 1 GIY-YIG catalytic domain T5orf172 PF10544.9 gi|257387199|ref|YP_003176972.1| - 0.011 16.2 0.2 0.014 16.0 0.2 1.2 1 0 0 1 1 1 0 T5orf172 domain PGM_PMM_I PF02878.16 gi|257387200|ref|YP_003176973.1| - 8.3e-37 126.0 0.0 2.2e-36 124.6 0.0 1.7 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|257387200|ref|YP_003176973.1| - 1.4e-26 93.1 0.4 3.3e-26 91.9 0.4 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_III PF02880.16 gi|257387200|ref|YP_003176973.1| - 1.2e-23 83.4 0.1 2.3e-23 82.6 0.1 1.4 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III PGM_PMM_IV PF00408.20 gi|257387200|ref|YP_003176973.1| - 6.2e-15 55.1 1.2 1.8e-14 53.6 0.1 2.3 3 0 0 3 3 3 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain KORA PF16509.5 gi|257387200|ref|YP_003176973.1| - 0.12 12.6 0.1 0.58 10.5 0.0 2.0 2 0 0 2 2 2 0 TrfB plasmid transcriptional repressor Acetyltransf_10 PF13673.7 gi|257387201|ref|YP_003176974.1| - 4.8e-10 39.5 0.0 6.1e-10 39.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|257387201|ref|YP_003176974.1| - 1.7e-09 38.0 0.0 2.3e-09 37.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|257387201|ref|YP_003176974.1| - 2.4e-07 31.0 0.1 3.4e-07 30.5 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family PanZ PF12568.8 gi|257387201|ref|YP_003176974.1| - 0.0037 17.0 1.5 0.0047 16.6 1.5 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain, PanZ Acetyltransf_9 PF13527.7 gi|257387201|ref|YP_003176974.1| - 0.016 15.3 0.1 0.13 12.4 0.1 2.1 1 1 1 2 2 2 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|257387201|ref|YP_003176974.1| - 0.026 14.7 0.0 0.046 13.9 0.0 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase FR47 PF08445.10 gi|257387201|ref|YP_003176974.1| - 0.06 13.3 0.2 0.15 12.0 0.2 1.7 1 1 0 1 1 1 0 FR47-like protein ThiS PF02597.20 gi|257387202|ref|YP_003176975.1| - 0.00038 21.0 0.3 0.00045 20.8 0.3 1.1 1 0 0 1 1 1 1 ThiS family DUF348 PF03990.14 gi|257387202|ref|YP_003176975.1| - 0.052 13.3 0.4 0.31 10.8 0.1 2.1 2 0 0 2 2 2 0 G5-linked-Ubiquitin-like domain Bactofilin PF04519.13 gi|257387203|ref|YP_003176976.1| - 1.6e-14 54.0 20.2 6.1e-12 45.7 9.4 2.4 1 1 1 2 2 2 2 Polymer-forming cytoskeletal FapA PF03961.13 gi|257387203|ref|YP_003176976.1| - 0.089 11.4 8.5 0.12 11.0 8.5 1.2 1 0 0 1 1 1 0 Flagellar Assembly Protein A VKOR PF07884.14 gi|257387203|ref|YP_003176976.1| - 0.17 12.1 10.0 0.15 12.3 3.5 2.4 1 1 1 2 2 2 0 Vitamin K epoxide reductase family PqiA PF04403.13 gi|257387203|ref|YP_003176976.1| - 0.35 10.7 6.4 0.57 10.0 6.4 1.3 1 0 0 1 1 1 0 Paraquat-inducible protein A Phage_spike PF18715.1 gi|257387203|ref|YP_003176976.1| - 2 8.5 23.6 1.4 9.1 2.9 4.7 1 1 2 4 4 4 0 Phage spike trimer AI-2E_transport PF01594.16 gi|257387204|ref|YP_003176977.1| - 2.5e-30 105.8 35.6 6.2e-30 104.5 35.6 1.5 1 1 0 1 1 1 1 AI-2E family transporter Rhodanese PF00581.20 gi|257387205|ref|YP_003176978.1| - 5e-37 126.7 0.0 1.7e-17 63.8 0.0 2.1 2 0 0 2 2 2 2 Rhodanese-like domain Rhodanese PF00581.20 gi|257387206|ref|YP_003176979.1| - 8.5e-35 119.5 0.4 1e-17 64.6 0.0 2.1 2 0 0 2 2 2 2 Rhodanese-like domain FMN_red PF03358.15 gi|257387208|ref|YP_003176981.1| - 1.8e-31 109.0 0.0 2.1e-31 108.8 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|257387208|ref|YP_003176981.1| - 3.1e-09 36.8 0.0 5.3e-09 36.1 0.0 1.3 1 1 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.7 gi|257387208|ref|YP_003176981.1| - 0.1 12.9 0.0 0.15 12.3 0.0 1.3 1 0 0 1 1 1 0 Flavodoxin domain Clp_N PF02861.20 gi|257387209|ref|YP_003176982.1| - 0.044 13.9 0.1 0.28 11.3 0.1 2.2 2 0 0 2 2 2 0 Clp amino terminal domain, pathogenicity island component Amidohydro_1 PF01979.20 gi|257387210|ref|YP_003176983.1| - 7.6e-41 140.6 0.0 9.3e-41 140.3 0.0 1.1 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_3 PF07969.11 gi|257387210|ref|YP_003176983.1| - 5.5e-17 62.4 16.7 1.4e-12 47.8 1.7 3.2 3 0 0 3 3 3 2 Amidohydrolase family SpoIIAA-like PF11964.8 gi|257387211|ref|YP_003176984.1| - 1.9e-09 38.4 0.0 2.6e-09 38.0 0.0 1.2 1 0 0 1 1 1 1 SpoIIAA-like EMC3_TMCO1 PF01956.16 gi|257387212|ref|YP_003176985.1| - 2.2e-28 99.1 0.0 2.9e-28 98.7 0.0 1.1 1 0 0 1 1 1 1 Integral membrane protein EMC3/TMCO1-like 60KD_IMP PF02096.20 gi|257387212|ref|YP_003176985.1| - 0.013 15.4 0.0 0.018 14.9 0.0 1.2 1 0 0 1 1 1 0 60Kd inner membrane protein TipAS PF07739.13 gi|257387212|ref|YP_003176985.1| - 0.025 15.1 0.2 0.041 14.4 0.2 1.2 1 0 0 1 1 1 0 TipAS antibiotic-recognition domain HalX PF08663.10 gi|257387212|ref|YP_003176985.1| - 0.14 12.5 5.9 0.19 12.1 4.5 2.0 1 1 1 2 2 2 0 HalX domain MCR_C PF04609.12 gi|257387212|ref|YP_003176985.1| - 0.23 10.5 0.2 0.32 10.0 0.2 1.1 1 0 0 1 1 1 0 Methyl-coenzyme M reductase operon protein C GreA_GreB_N PF03449.15 gi|257387212|ref|YP_003176985.1| - 0.9 9.7 4.8 3.5 7.8 4.8 1.8 1 1 0 1 1 1 0 Transcription elongation factor, N-terminal UvrB_inter PF17757.1 gi|257387213|ref|YP_003176986.1| - 1.2e-30 105.5 0.0 3.8e-30 103.9 0.0 1.9 1 0 0 1 1 1 1 UvrB interaction domain UvrB PF12344.8 gi|257387213|ref|YP_003176986.1| - 2.1e-20 72.3 0.5 4.9e-20 71.1 0.5 1.7 1 0 0 1 1 1 1 Ultra-violet resistance protein B Helicase_C PF00271.31 gi|257387213|ref|YP_003176986.1| - 4.1e-16 59.3 0.0 8.8e-16 58.2 0.0 1.6 1 0 0 1 1 1 1 Helicase conserved C-terminal domain UVR PF02151.19 gi|257387213|ref|YP_003176986.1| - 3.7e-09 36.0 9.3 1.8e-08 33.9 9.3 2.3 1 0 0 1 1 1 1 UvrB/uvrC motif ResIII PF04851.15 gi|257387213|ref|YP_003176986.1| - 1.6e-07 31.5 0.0 1.9e-06 28.0 0.0 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_19 PF13245.6 gi|257387213|ref|YP_003176986.1| - 0.0026 18.1 0.1 4.2 7.7 0.1 2.8 2 0 0 2 2 2 2 AAA domain UB2H PF14814.6 gi|257387213|ref|YP_003176986.1| - 0.0043 17.0 0.1 0.016 15.2 0.0 2.0 2 0 0 2 2 2 1 Bifunctional transglycosylase second domain DEAD PF00270.29 gi|257387213|ref|YP_003176986.1| - 0.0093 15.8 0.0 0.054 13.3 0.0 2.3 3 0 0 3 3 3 1 DEAD/DEAH box helicase DUF87 PF01935.17 gi|257387213|ref|YP_003176986.1| - 0.041 14.0 0.0 0.15 12.1 0.0 2.0 1 0 0 1 1 1 0 Helicase HerA, central domain AAA_22 PF13401.6 gi|257387213|ref|YP_003176986.1| - 0.17 12.2 0.2 3.5 7.9 0.0 2.7 2 0 0 2 2 2 0 AAA domain HD PF01966.22 gi|257387214|ref|YP_003176987.1| - 3.8e-09 36.8 1.0 5.8e-09 36.2 1.0 1.3 1 0 0 1 1 1 1 HD domain Abhydrolase_6 PF12697.7 gi|257387215|ref|YP_003176988.1| - 9.9e-16 59.0 12.0 1.2e-15 58.8 12.0 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|257387215|ref|YP_003176988.1| - 1.5e-13 51.0 0.1 5e-12 46.0 0.1 2.0 1 1 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|257387215|ref|YP_003176988.1| - 7.4e-09 35.2 0.1 0.0031 16.8 0.0 2.2 2 0 0 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_4 PF08386.10 gi|257387215|ref|YP_003176988.1| - 0.001 19.2 0.1 0.0043 17.2 0.1 2.0 1 1 0 1 1 1 1 TAP-like protein Rep_1B PF17873.1 gi|257387215|ref|YP_003176988.1| - 0.016 15.0 0.3 0.044 13.7 0.3 1.6 1 0 0 1 1 1 0 Replicase polyprotein 1ab Abhydrolase_2 PF02230.16 gi|257387215|ref|YP_003176988.1| - 0.024 14.4 0.1 4.9 6.9 0.0 2.8 3 0 0 3 3 3 0 Phospholipase/Carboxylesterase Abhydrolase_5 PF12695.7 gi|257387215|ref|YP_003176988.1| - 0.029 14.1 0.0 1.3 8.8 0.0 2.3 2 0 0 2 2 2 0 Alpha/beta hydrolase family ParE_toxin PF05016.15 gi|257387216|ref|YP_003176989.1| - 5.4e-05 23.7 0.0 6.8e-05 23.4 0.0 1.1 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE RHH_1 PF01402.21 gi|257387217|ref|YP_003176990.1| - 0.0026 17.7 0.1 0.011 15.6 0.0 2.0 2 1 0 2 2 2 1 Ribbon-helix-helix protein, copG family ECH_1 PF00378.20 gi|257387219|ref|YP_003176992.1| - 2.2e-33 115.6 0.3 2.5e-33 115.4 0.3 1.1 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|257387219|ref|YP_003176992.1| - 2.3e-22 80.0 0.2 2.5e-22 79.8 0.2 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase DUF3105 PF11303.8 gi|257387220|ref|YP_003176993.1| - 1.2e-31 109.6 0.1 1.5e-31 109.2 0.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3105) zf-C2H2_4 PF13894.6 gi|257387220|ref|YP_003176993.1| - 0.031 15.1 0.0 0.064 14.1 0.0 1.5 1 0 0 1 1 1 0 C2H2-type zinc finger NAD_synthase PF02540.17 gi|257387221|ref|YP_003176994.1| - 2.8e-72 242.7 0.0 3.3e-72 242.5 0.0 1.0 1 0 0 1 1 1 1 NAD synthase tRNA_Me_trans PF03054.16 gi|257387221|ref|YP_003176994.1| - 0.00019 20.3 0.0 0.052 12.3 0.0 2.2 2 0 0 2 2 2 2 tRNA methyl transferase QueC PF06508.13 gi|257387221|ref|YP_003176994.1| - 0.042 13.3 0.0 0.14 11.6 0.0 1.9 2 0 0 2 2 2 0 Queuosine biosynthesis protein QueC Glyoxalase PF00903.25 gi|257387223|ref|YP_003176996.1| - 5.8e-15 55.6 0.2 6.7e-15 55.4 0.2 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|257387223|ref|YP_003176996.1| - 4.1e-12 46.3 0.4 3.1e-11 43.5 0.2 2.0 1 1 1 2 2 2 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 gi|257387223|ref|YP_003176996.1| - 1.7e-07 32.0 1.6 2.3e-07 31.6 1.6 1.2 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_3 PF13468.6 gi|257387223|ref|YP_003176996.1| - 0.0025 17.9 0.4 0.094 12.8 0.4 2.1 1 1 0 1 1 1 1 Glyoxalase-like domain NIF3 PF01784.18 gi|257387223|ref|YP_003176996.1| - 0.15 11.6 0.1 0.2 11.3 0.1 1.1 1 0 0 1 1 1 0 NIF3 (NGG1p interacting factor 3) Aldo_ket_red PF00248.21 gi|257387224|ref|YP_003176997.1| - 1.3e-72 244.5 0.0 1.4e-72 244.3 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family RHH_5 PF07878.11 gi|257387224|ref|YP_003176997.1| - 0.04 13.8 0.1 0.099 12.5 0.1 1.7 1 0 0 1 1 1 0 CopG-like RHH_1 or ribbon-helix-helix domain, RHH_5 CxxCxxCC PF03692.15 gi|257387225|ref|YP_003176998.1| - 6.1e-05 23.6 0.1 0.0007 20.2 0.1 2.1 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain CBS PF00571.28 gi|257387226|ref|YP_003176999.1| - 1.9e-19 69.9 1.9 9.6e-09 35.6 0.3 2.2 2 0 0 2 2 2 2 CBS domain Aldo_ket_red PF00248.21 gi|257387227|ref|YP_003177000.1| - 1.7e-62 211.3 0.0 8.3e-49 166.3 0.0 2.0 1 1 1 2 2 2 2 Aldo/keto reductase family NAD_synthase PF02540.17 gi|257387228|ref|YP_003177001.1| - 2.7e-52 177.3 0.0 3.1e-52 177.1 0.0 1.0 1 0 0 1 1 1 1 NAD synthase HTH_23 PF13384.6 gi|257387228|ref|YP_003177001.1| - 0.0029 17.3 0.6 0.019 14.8 0.2 2.6 2 1 1 3 3 3 1 Homeodomain-like domain HTH_29 PF13551.6 gi|257387228|ref|YP_003177001.1| - 0.0063 16.5 0.1 0.11 12.6 0.0 2.6 2 0 0 2 2 2 1 Winged helix-turn helix HrcA_DNA-bdg PF03444.15 gi|257387229|ref|YP_003177002.1| - 3.7e-21 74.6 0.0 5.3e-21 74.1 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_11 PF08279.12 gi|257387229|ref|YP_003177002.1| - 2.8e-06 27.2 0.0 5.3e-06 26.3 0.0 1.5 1 0 0 1 1 1 1 HTH domain Rrf2 PF02082.20 gi|257387229|ref|YP_003177002.1| - 3.9e-06 27.1 0.0 7.9e-06 26.1 0.0 1.4 1 0 0 1 1 1 1 Transcriptional regulator HTH_20 PF12840.7 gi|257387229|ref|YP_003177002.1| - 2.3e-05 24.4 0.0 6.3e-05 23.0 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.19 gi|257387229|ref|YP_003177002.1| - 4.1e-05 23.4 0.0 8.2e-05 22.4 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|257387229|ref|YP_003177002.1| - 6.6e-05 22.7 0.1 0.00021 21.1 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_5 PF01022.20 gi|257387229|ref|YP_003177002.1| - 0.0058 16.5 0.1 0.016 15.0 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|257387229|ref|YP_003177002.1| - 0.014 15.2 0.0 0.027 14.3 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain Fe_dep_repress PF01325.19 gi|257387229|ref|YP_003177002.1| - 0.016 15.3 0.0 0.036 14.3 0.0 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_24 PF13412.6 gi|257387229|ref|YP_003177002.1| - 0.049 13.2 0.0 0.087 12.4 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|257387229|ref|YP_003177002.1| - 0.049 13.6 0.1 0.12 12.3 0.1 1.7 1 1 0 1 1 1 0 MarR family HTH_27 PF13463.6 gi|257387229|ref|YP_003177002.1| - 0.074 13.5 0.0 0.14 12.7 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain Phage_rep_org_N PF09681.10 gi|257387229|ref|YP_003177002.1| - 0.095 12.6 0.0 0.17 11.8 0.0 1.3 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) Ribosomal_S24e PF01282.19 gi|257387231|ref|YP_003177004.1| - 1.5e-25 88.9 0.1 1.8e-25 88.6 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein S24e Ribosomal_S27 PF01599.19 gi|257387232|ref|YP_003177005.1| - 4.9e-12 45.8 4.1 6.3e-12 45.5 4.1 1.3 1 0 0 1 1 1 1 Ribosomal protein S27a Nudix_N_2 PF14803.6 gi|257387232|ref|YP_003177005.1| - 0.0012 18.7 2.8 0.56 10.2 0.2 2.1 2 0 0 2 2 2 2 Nudix N-terminal FYVE PF01363.21 gi|257387232|ref|YP_003177005.1| - 0.0014 18.7 0.8 0.0015 18.7 0.8 1.1 1 0 0 1 1 1 1 FYVE zinc finger RNA_POL_M_15KD PF02150.16 gi|257387232|ref|YP_003177005.1| - 0.0018 18.1 1.2 0.0026 17.6 1.2 1.2 1 0 0 1 1 1 1 RNA polymerases M/15 Kd subunit Ribosomal_L37e PF01907.19 gi|257387232|ref|YP_003177005.1| - 0.0041 17.2 0.9 0.0052 16.9 0.9 1.3 1 0 0 1 1 1 1 Ribosomal protein L37e zf-ribbon_3 PF13248.6 gi|257387232|ref|YP_003177005.1| - 0.034 13.5 5.5 0.13 11.7 5.5 1.9 1 1 0 1 1 1 0 zinc-ribbon domain FlhC PF05280.11 gi|257387232|ref|YP_003177005.1| - 0.045 13.5 0.1 0.048 13.4 0.1 1.0 1 0 0 1 1 1 0 Flagellar transcriptional activator (FlhC) zinc_ribbon_2 PF13240.6 gi|257387232|ref|YP_003177005.1| - 0.045 13.5 4.1 2.5 8.0 0.5 2.2 2 0 0 2 2 2 0 zinc-ribbon domain HypA PF01155.19 gi|257387232|ref|YP_003177005.1| - 0.059 13.4 1.4 0.062 13.3 1.4 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TF_Zn_Ribbon PF08271.12 gi|257387232|ref|YP_003177005.1| - 0.08 12.5 3.9 0.25 10.9 3.9 1.8 1 1 0 1 1 1 0 TFIIB zinc-binding CpXC PF14353.6 gi|257387232|ref|YP_003177005.1| - 0.21 11.6 2.9 0.22 11.6 0.1 1.9 1 1 1 2 2 2 0 CpXC protein NOB1_Zn_bind PF08772.11 gi|257387232|ref|YP_003177005.1| - 0.55 10.4 4.3 4.5 7.5 0.1 2.0 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like zinc_ribbon_5 PF13719.6 gi|257387232|ref|YP_003177005.1| - 0.91 9.3 6.3 4 7.3 6.3 1.8 1 1 0 1 1 1 0 zinc-ribbon domain YhfH PF14149.6 gi|257387232|ref|YP_003177005.1| - 2.9 8.0 7.6 1.3e+02 2.7 3.3 2.2 1 1 1 2 2 2 0 YhfH-like protein zf_UBZ PF18439.1 gi|257387232|ref|YP_003177005.1| - 4.3 7.0 8.3 0.8 9.4 2.2 2.4 1 1 1 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-NADH-PPase PF09297.11 gi|257387232|ref|YP_003177005.1| - 7.3 6.3 10.6 0.94 9.2 4.1 2.3 2 1 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain Peptidase_M22 PF00814.25 gi|257387233|ref|YP_003177006.1| - 3.3e-71 240.2 0.0 4.5e-71 239.7 0.0 1.1 1 0 0 1 1 1 1 Glycoprotease family Kdo PF06293.14 gi|257387233|ref|YP_003177006.1| - 0.00024 20.6 0.0 0.00072 19.0 0.0 1.7 2 0 0 2 2 2 1 Lipopolysaccharide kinase (Kdo/WaaP) family APH PF01636.23 gi|257387233|ref|YP_003177006.1| - 0.0013 18.7 13.2 0.054 13.4 4.5 2.4 1 1 1 2 2 2 2 Phosphotransferase enzyme family Usp PF00582.26 gi|257387234|ref|YP_003177007.1| - 1.6e-07 31.9 4.1 7.6e-07 29.7 4.1 1.8 1 1 0 1 1 1 1 Universal stress protein family Ham1p_like PF01725.16 gi|257387236|ref|YP_003177009.1| - 1.7e-50 171.6 0.0 2.5e-50 171.0 0.0 1.2 1 1 0 1 1 1 1 Ham1 family TPR_21 PF09976.9 gi|257387236|ref|YP_003177009.1| - 0.063 13.0 0.2 0.11 12.2 0.2 1.3 1 0 0 1 1 1 0 Tetratricopeptide repeat-like domain Keratin_B2 PF01500.17 gi|257387237|ref|YP_003177010.1| - 0.026 14.5 5.3 0.032 14.2 5.3 1.2 1 0 0 1 1 1 0 Keratin, high sulfur B2 protein TrbM PF07424.11 gi|257387237|ref|YP_003177010.1| - 4.9 7.1 11.5 50 3.8 0.1 3.9 4 0 0 4 4 4 0 TrbM adh_short PF00106.25 gi|257387238|ref|YP_003177011.1| - 2.2e-43 148.0 0.0 2.7e-43 147.7 0.0 1.0 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|257387238|ref|YP_003177011.1| - 3.2e-25 89.1 0.0 4e-25 88.8 0.0 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|257387238|ref|YP_003177011.1| - 1.3e-16 61.0 0.1 1.7e-16 60.7 0.1 1.1 1 0 0 1 1 1 1 KR domain HEM4 PF02602.15 gi|257387238|ref|YP_003177011.1| - 4e-06 26.4 0.9 0.0022 17.4 0.3 2.1 2 0 0 2 2 2 2 Uroporphyrinogen-III synthase HemD NAD_binding_10 PF13460.6 gi|257387238|ref|YP_003177011.1| - 9e-05 22.4 1.1 0.0011 18.9 1.1 2.1 1 1 0 1 1 1 1 NAD(P)H-binding Glyco_trans_4_4 PF13579.6 gi|257387238|ref|YP_003177011.1| - 9.5e-05 22.9 11.6 0.13 12.7 5.1 3.0 2 1 0 2 2 2 2 Glycosyl transferase 4-like domain Epimerase PF01370.21 gi|257387238|ref|YP_003177011.1| - 0.00022 20.7 0.9 0.00046 19.7 0.9 1.7 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Sacchrp_dh_NADP PF03435.18 gi|257387238|ref|YP_003177011.1| - 0.0011 19.2 0.1 0.0021 18.3 0.1 1.4 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain F420_oxidored PF03807.17 gi|257387238|ref|YP_003177011.1| - 0.002 18.7 0.1 0.0039 17.7 0.1 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Glyco_transf_4 PF13439.6 gi|257387238|ref|YP_003177011.1| - 0.0095 16.0 3.0 1.5 8.8 1.3 3.0 2 1 0 2 2 2 1 Glycosyltransferase Family 4 ApbA PF02558.16 gi|257387238|ref|YP_003177011.1| - 0.085 12.5 0.0 0.13 11.9 0.0 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Pyr_redox_2 PF07992.14 gi|257387238|ref|YP_003177011.1| - 0.11 11.7 0.0 0.16 11.2 0.0 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase NmrA PF05368.13 gi|257387238|ref|YP_003177011.1| - 0.14 11.7 0.3 0.3 10.6 0.1 1.6 2 0 0 2 2 2 0 NmrA-like family 3HCDH_N PF02737.18 gi|257387238|ref|YP_003177011.1| - 0.15 11.9 0.0 0.22 11.4 0.0 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PIN_3 PF13470.6 gi|257387239|ref|YP_003177012.1| - 0.00029 21.6 2.5 0.0051 17.6 2.5 2.1 1 1 0 1 1 1 1 PIN domain Lactamase_B PF00753.27 gi|257387241|ref|YP_003177014.1| - 1.5e-11 44.7 13.0 2.1e-09 37.7 13.0 2.1 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|257387241|ref|YP_003177014.1| - 0.00035 20.1 5.8 0.0018 17.8 5.6 2.0 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Se-cys_synth_N PF12390.8 gi|257387241|ref|YP_003177014.1| - 0.073 13.3 0.8 1 9.6 0.1 2.6 2 0 0 2 2 2 0 Selenocysteine synthase N terminal GvpG PF05120.12 gi|257387242|ref|YP_003177015.1| - 0.47 10.5 2.5 1.4 9.0 2.5 1.8 1 1 0 1 1 1 0 Gas vesicle protein G DUF99 PF01949.16 gi|257387243|ref|YP_003177016.1| - 2.5e-62 209.5 0.4 2.8e-62 209.4 0.4 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF99 Imm1 PF14430.6 gi|257387243|ref|YP_003177016.1| - 0.039 14.6 1.1 0.069 13.8 1.1 1.5 1 1 0 1 1 1 0 Immunity protein Imm1 TrkA_N PF02254.18 gi|257387244|ref|YP_003177017.1| - 2.3e-25 89.1 0.5 3.3e-25 88.6 0.5 1.2 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.21 gi|257387244|ref|YP_003177017.1| - 1.4e-12 47.3 0.1 2.4e-12 46.5 0.1 1.4 1 0 0 1 1 1 1 TrkA-C domain NAD_binding_7 PF13241.6 gi|257387244|ref|YP_003177017.1| - 0.00036 20.9 0.1 0.0006 20.2 0.1 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding Sacchrp_dh_NADP PF03435.18 gi|257387244|ref|YP_003177017.1| - 0.00043 20.5 0.1 0.0006 20.1 0.1 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain AdoHcyase_NAD PF00670.21 gi|257387244|ref|YP_003177017.1| - 0.0024 17.9 0.0 0.0036 17.4 0.0 1.3 1 0 0 1 1 1 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain UDPG_MGDP_dh_N PF03721.14 gi|257387244|ref|YP_003177017.1| - 0.0025 17.4 0.0 0.0041 16.7 0.0 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|257387244|ref|YP_003177017.1| - 0.0056 16.1 0.0 0.0086 15.4 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ApbA PF02558.16 gi|257387244|ref|YP_003177017.1| - 0.019 14.6 0.0 0.028 14.1 0.0 1.3 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NmrA PF05368.13 gi|257387244|ref|YP_003177017.1| - 0.029 13.9 0.1 0.042 13.4 0.1 1.3 1 0 0 1 1 1 0 NmrA-like family F420_oxidored PF03807.17 gi|257387244|ref|YP_003177017.1| - 0.035 14.7 0.0 0.068 13.8 0.0 1.5 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.18 gi|257387244|ref|YP_003177017.1| - 0.04 13.8 0.1 0.058 13.3 0.1 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IlvN PF07991.12 gi|257387244|ref|YP_003177017.1| - 0.041 13.5 0.0 0.074 12.6 0.0 1.5 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain Gp_dh_N PF00044.24 gi|257387244|ref|YP_003177017.1| - 0.079 13.3 0.0 0.13 12.6 0.0 1.4 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain FAD_binding_3 PF01494.19 gi|257387244|ref|YP_003177017.1| - 0.084 12.1 0.0 0.1 11.8 0.0 1.2 1 0 0 1 1 1 0 FAD binding domain NAD_binding_2 PF03446.15 gi|257387244|ref|YP_003177017.1| - 0.1 12.7 0.0 0.31 11.2 0.0 1.8 2 0 0 2 2 2 0 NAD binding domain of 6-phosphogluconate dehydrogenase Prot_ATP_ID_OB PF16450.5 gi|257387244|ref|YP_003177017.1| - 0.11 12.5 0.3 0.35 10.9 0.0 1.9 2 0 0 2 2 2 0 Proteasomal ATPase OB C-terminal domain Rad51 PF08423.11 gi|257387245|ref|YP_003177018.1| - 2.6e-76 256.3 0.2 4.9e-75 252.1 0.2 2.0 1 1 0 1 1 1 1 Rad51 HHH_5 PF14520.6 gi|257387245|ref|YP_003177018.1| - 2e-10 41.1 0.1 6e-10 39.6 0.1 1.9 1 0 0 1 1 1 1 Helix-hairpin-helix domain RecA PF00154.21 gi|257387245|ref|YP_003177018.1| - 2e-07 30.8 0.1 0.014 14.9 0.0 2.2 2 0 0 2 2 2 2 recA bacterial DNA recombination protein HHH PF00633.23 gi|257387245|ref|YP_003177018.1| - 4.5e-06 26.3 1.0 0.00041 20.1 0.1 2.7 2 0 0 2 2 2 1 Helix-hairpin-helix motif AAA_25 PF13481.6 gi|257387245|ref|YP_003177018.1| - 2.5e-05 23.9 0.1 4.6e-05 23.1 0.1 1.5 1 1 0 1 1 1 1 AAA domain HHH_2 PF12826.7 gi|257387245|ref|YP_003177018.1| - 0.00078 19.5 0.0 0.0027 17.8 0.0 1.9 1 1 0 1 1 1 1 Helix-hairpin-helix motif ATPase PF06745.13 gi|257387245|ref|YP_003177018.1| - 0.0029 17.0 0.1 0.0058 16.0 0.1 1.5 1 0 0 1 1 1 1 KaiC Cdd1 PF11731.8 gi|257387245|ref|YP_003177018.1| - 0.0055 16.9 0.0 0.011 15.9 0.0 1.6 1 0 0 1 1 1 1 Pathogenicity locus IMS_HHH PF11798.8 gi|257387245|ref|YP_003177018.1| - 0.01 16.1 0.0 0.039 14.3 0.0 2.0 2 0 0 2 2 2 0 IMS family HHH motif HHH_3 PF12836.7 gi|257387245|ref|YP_003177018.1| - 0.015 15.5 0.1 1.4 9.2 0.0 2.6 2 0 0 2 2 2 0 Helix-hairpin-helix motif HHH_8 PF14716.6 gi|257387245|ref|YP_003177018.1| - 0.085 13.2 0.1 0.64 10.4 0.0 2.3 2 0 0 2 2 2 0 Helix-hairpin-helix domain HtrL_YibB PF09612.10 gi|257387245|ref|YP_003177018.1| - 0.095 12.2 0.0 0.14 11.6 0.0 1.2 1 0 0 1 1 1 0 Bacterial protein of unknown function (HtrL_YibB) BAF PF02961.14 gi|257387245|ref|YP_003177018.1| - 0.18 12.2 0.0 0.45 11.0 0.0 1.6 1 0 0 1 1 1 0 Barrier to autointegration factor Hydrolase_4 PF12146.8 gi|257387246|ref|YP_003177019.1| - 3.8e-09 36.2 1.1 1.7e-08 34.1 1.1 1.8 1 1 0 1 1 1 1 Serine aminopeptidase, S33 AXE1 PF05448.12 gi|257387246|ref|YP_003177019.1| - 5.2e-06 25.3 0.1 0.0016 17.2 0.0 2.2 2 0 0 2 2 2 2 Acetyl xylan esterase (AXE1) Abhydrolase_1 PF00561.20 gi|257387246|ref|YP_003177019.1| - 0.00019 21.2 0.2 0.00033 20.4 0.2 1.4 1 0 0 1 1 1 1 alpha/beta hydrolase fold Peptidase_S15 PF02129.18 gi|257387246|ref|YP_003177019.1| - 0.00033 20.3 0.3 0.089 12.4 0.0 2.4 2 0 0 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) Peptidase_S9 PF00326.21 gi|257387246|ref|YP_003177019.1| - 0.0033 16.9 0.2 0.014 14.9 0.1 1.9 2 0 0 2 2 2 1 Prolyl oligopeptidase family Abhydrolase_6 PF12697.7 gi|257387246|ref|YP_003177019.1| - 0.0038 17.9 21.3 0.12 13.0 21.3 2.8 1 1 0 1 1 1 1 Alpha/beta hydrolase family PAF-AH_p_II PF03403.13 gi|257387246|ref|YP_003177019.1| - 0.013 14.0 0.0 0.11 11.0 0.0 2.0 2 0 0 2 2 2 0 Platelet-activating factor acetylhydrolase, isoform II Esterase PF00756.20 gi|257387246|ref|YP_003177019.1| - 0.046 13.4 0.1 0.12 12.0 0.1 1.6 2 0 0 2 2 2 0 Putative esterase DUF4307 PF14155.6 gi|257387246|ref|YP_003177019.1| - 2.4 8.1 0.0 2.4 8.1 0.0 3.9 5 0 0 5 5 5 0 Domain of unknown function (DUF4307) Apidaecin PF00807.17 gi|257387247|ref|YP_003177020.1| - 5.6 7.1 6.8 10 6.3 0.1 2.7 3 0 0 3 3 3 0 Apidaecin SBP_bac_5 PF00496.22 gi|257387249|ref|YP_003177022.1| - 5.1e-44 150.8 2.5 6.7e-44 150.4 2.5 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle DUF4357 PF14267.6 gi|257387249|ref|YP_003177022.1| - 0.0046 16.9 0.1 0.012 15.6 0.1 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4357) TAT_signal PF10518.9 gi|257387249|ref|YP_003177022.1| - 0.13 12.2 6.2 0.22 11.4 6.2 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_1 PF00528.22 gi|257387250|ref|YP_003177023.1| - 1.4e-34 119.4 11.3 1.4e-34 119.4 11.3 1.8 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component Colicin_V PF02674.16 gi|257387250|ref|YP_003177023.1| - 0.012 15.6 2.7 0.012 15.6 2.7 2.4 2 0 0 2 2 2 0 Colicin V production protein Fumarate_red_C PF02300.17 gi|257387250|ref|YP_003177023.1| - 0.77 9.8 0.1 0.77 9.8 0.1 3.1 3 1 0 3 3 3 0 Fumarate reductase subunit C PGG PF13962.6 gi|257387250|ref|YP_003177023.1| - 4.2 7.2 11.1 0.79 9.6 0.7 2.7 3 0 0 3 3 3 0 Domain of unknown function BPD_transp_1 PF00528.22 gi|257387251|ref|YP_003177024.1| - 1.1e-25 90.5 6.9 1.1e-25 90.5 6.9 2.0 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|257387251|ref|YP_003177024.1| - 0.13 12.2 3.2 0.18 11.8 0.1 2.7 3 0 0 3 3 3 0 N-terminal TM domain of oligopeptide transport permease C DUF3169 PF11368.8 gi|257387251|ref|YP_003177024.1| - 0.42 10.1 2.6 0.37 10.3 0.9 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3169) ABC_tran PF00005.27 gi|257387252|ref|YP_003177025.1| - 1.4e-21 77.5 0.0 2e-21 76.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|257387252|ref|YP_003177025.1| - 6.8e-20 71.4 0.2 1.3e-19 70.4 0.2 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|257387252|ref|YP_003177025.1| - 1.3e-09 38.3 1.2 1.9e-08 34.5 0.6 2.1 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|257387252|ref|YP_003177025.1| - 1.6e-05 24.4 0.2 0.04 13.4 0.1 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|257387252|ref|YP_003177025.1| - 5.5e-05 23.5 0.4 0.0029 17.9 0.4 2.2 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|257387252|ref|YP_003177025.1| - 0.0034 17.8 0.0 0.007 16.8 0.0 1.7 1 1 0 1 1 1 1 AAA ATPase domain IstB_IS21 PF01695.17 gi|257387252|ref|YP_003177025.1| - 0.0066 16.2 0.0 0.53 10.0 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein TniB PF05621.11 gi|257387252|ref|YP_003177025.1| - 0.0082 15.6 0.1 1.6 8.1 0.1 2.2 2 0 0 2 2 2 1 Bacterial TniB protein ABC_ATPase PF09818.9 gi|257387252|ref|YP_003177025.1| - 0.011 14.5 0.0 0.036 12.9 0.0 1.7 1 1 0 1 1 1 0 Predicted ATPase of the ABC class AAA_29 PF13555.6 gi|257387252|ref|YP_003177025.1| - 0.014 15.1 0.0 0.028 14.2 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF87 PF01935.17 gi|257387252|ref|YP_003177025.1| - 0.023 14.8 0.1 0.07 13.2 0.1 1.7 1 1 1 2 2 2 0 Helicase HerA, central domain AAA_25 PF13481.6 gi|257387252|ref|YP_003177025.1| - 0.037 13.6 0.0 0.28 10.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain NACHT PF05729.12 gi|257387252|ref|YP_003177025.1| - 0.081 12.8 0.1 0.19 11.6 0.0 1.6 2 0 0 2 2 2 0 NACHT domain Sigma54_activat PF00158.26 gi|257387252|ref|YP_003177025.1| - 0.19 11.4 0.1 0.74 9.5 0.0 1.8 2 0 0 2 2 2 0 Sigma-54 interaction domain Mg_chelatase PF01078.21 gi|257387252|ref|YP_003177025.1| - 0.19 11.1 0.0 0.44 9.9 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_24 PF13479.6 gi|257387252|ref|YP_003177025.1| - 0.2 11.3 0.0 0.67 9.7 0.0 1.9 3 0 0 3 3 3 0 AAA domain ABC_tran PF00005.27 gi|257387253|ref|YP_003177026.1| - 1.6e-28 99.9 0.0 2.3e-28 99.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|257387253|ref|YP_003177026.1| - 1.1e-12 48.2 0.1 2.1e-12 47.4 0.1 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_22 PF13401.6 gi|257387253|ref|YP_003177026.1| - 0.0011 19.3 2.7 0.035 14.4 2.7 2.5 1 1 0 1 1 1 1 AAA domain PduV-EutP PF10662.9 gi|257387253|ref|YP_003177026.1| - 0.0052 16.5 0.0 0.0089 15.8 0.0 1.3 1 0 0 1 1 1 1 Ethanolamine utilisation - propanediol utilisation AAA_21 PF13304.6 gi|257387253|ref|YP_003177026.1| - 0.015 15.1 0.4 2.9 7.6 0.0 2.2 1 1 0 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system NB-ARC PF00931.22 gi|257387253|ref|YP_003177026.1| - 0.054 12.7 0.1 0.1 11.7 0.1 1.4 1 0 0 1 1 1 0 NB-ARC domain ATPase PF06745.13 gi|257387253|ref|YP_003177026.1| - 0.077 12.3 0.0 0.15 11.4 0.0 1.5 1 0 0 1 1 1 0 KaiC AAA_29 PF13555.6 gi|257387253|ref|YP_003177026.1| - 0.1 12.4 0.0 0.22 11.3 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF1129 PF06570.11 gi|257387254|ref|YP_003177027.1| - 0.029 13.9 0.3 0.03 13.8 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1129) DUF2207 PF09972.9 gi|257387254|ref|YP_003177027.1| - 0.03 13.1 1.6 0.032 13.0 1.6 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) HEAT_2 PF13646.6 gi|257387255|ref|YP_003177028.1| - 9.9e-11 41.9 19.0 1.7e-06 28.3 3.1 4.2 2 2 3 5 5 5 4 HEAT repeats Adaptin_N PF01602.20 gi|257387255|ref|YP_003177028.1| - 3e-10 39.3 0.7 2e-09 36.6 0.7 1.8 1 1 0 1 1 1 1 Adaptin N terminal region Arm PF00514.23 gi|257387255|ref|YP_003177028.1| - 1.8e-06 27.7 7.6 0.00082 19.3 0.1 4.6 4 0 0 4 4 4 1 Armadillo/beta-catenin-like repeat HEAT_EZ PF13513.6 gi|257387255|ref|YP_003177028.1| - 0.00016 22.1 17.1 0.44 11.1 0.4 5.2 3 2 3 6 6 6 3 HEAT-like repeat Cnd1 PF12717.7 gi|257387255|ref|YP_003177028.1| - 0.012 15.7 0.2 4.1 7.4 0.0 2.5 2 0 0 2 2 2 0 non-SMC mitotic condensation complex subunit 1 Gag_p12 PF01141.18 gi|257387255|ref|YP_003177028.1| - 0.054 13.8 0.6 0.27 11.6 0.0 2.4 3 0 0 3 3 3 0 Gag polyprotein, inner coat protein p12 HEAT_PBS PF03130.16 gi|257387255|ref|YP_003177028.1| - 0.22 12.3 0.1 0.22 12.3 0.1 4.6 6 0 0 6 6 6 0 PBS lyase HEAT-like repeat HEAT PF02985.22 gi|257387255|ref|YP_003177028.1| - 0.84 10.1 4.2 56 4.4 0.0 4.3 5 0 0 5 5 5 0 HEAT repeat Peptidase_M48 PF01435.18 gi|257387256|ref|YP_003177029.1| - 4.4e-44 150.6 0.4 1.7e-42 145.4 0.0 2.0 1 1 1 2 2 2 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|257387256|ref|YP_003177029.1| - 8.3e-08 31.8 2.3 6.4e-07 28.9 0.0 2.3 2 1 0 2 2 2 1 BlaR1 peptidase M56 SprT-like PF10263.9 gi|257387256|ref|YP_003177029.1| - 0.098 12.5 0.0 0.14 12.0 0.0 1.2 1 0 0 1 1 1 0 SprT-like family DUF3290 PF11694.8 gi|257387256|ref|YP_003177029.1| - 0.28 11.1 1.0 11 6.0 0.0 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF3290) TspO_MBR PF03073.15 gi|257387257|ref|YP_003177030.1| - 1.9e-37 128.3 18.5 2.3e-37 128.0 18.5 1.0 1 0 0 1 1 1 1 TspO/MBR family NMD3 PF04981.13 gi|257387258|ref|YP_003177031.1| - 2.7e-63 213.7 0.3 3.2e-63 213.4 0.3 1.1 1 0 0 1 1 1 1 NMD3 family Rpr2 PF04032.16 gi|257387258|ref|YP_003177031.1| - 0.0089 16.3 0.2 0.26 11.6 0.0 2.5 3 0 0 3 3 2 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain DZR PF12773.7 gi|257387258|ref|YP_003177031.1| - 0.026 14.5 4.3 0.8 9.8 2.7 3.0 2 1 0 2 2 2 0 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|257387258|ref|YP_003177031.1| - 0.038 13.7 10.2 0.072 12.8 0.2 3.8 4 0 0 4 4 4 0 zinc-ribbon domain GFA PF04828.14 gi|257387258|ref|YP_003177031.1| - 0.05 13.9 2.0 9.6 6.6 0.0 3.1 3 0 0 3 3 3 0 Glutathione-dependent formaldehyde-activating enzyme zf_UBZ PF18439.1 gi|257387258|ref|YP_003177031.1| - 0.053 13.1 0.1 0.053 13.1 0.1 3.5 4 0 0 4 4 4 0 Ubiquitin-Binding Zinc Finger FYVE PF01363.21 gi|257387258|ref|YP_003177031.1| - 0.16 12.2 1.6 7.6 6.8 1.6 2.5 2 1 0 2 2 2 0 FYVE zinc finger YhfH PF14149.6 gi|257387258|ref|YP_003177031.1| - 0.28 11.2 2.7 64 3.6 0.1 3.3 3 0 0 3 3 3 0 YhfH-like protein Nudix_N_2 PF14803.6 gi|257387258|ref|YP_003177031.1| - 0.7 9.9 14.2 6.2 6.8 0.4 4.2 4 0 0 4 4 4 0 Nudix N-terminal Lar_restr_allev PF14354.6 gi|257387258|ref|YP_003177031.1| - 1.4 9.4 4.1 14 6.1 2.1 2.9 2 1 0 2 2 2 0 Restriction alleviation protein Lar TF_Zn_Ribbon PF08271.12 gi|257387258|ref|YP_003177031.1| - 2.5 7.7 8.5 11 5.7 1.0 3.7 3 0 0 3 3 3 0 TFIIB zinc-binding zf-ribbon_3 PF13248.6 gi|257387258|ref|YP_003177031.1| - 6.5 6.3 10.4 14 5.3 0.2 3.8 4 0 0 4 4 4 0 zinc-ribbon domain PQQ_2 PF13360.6 gi|257387259|ref|YP_003177032.1| - 1.9e-19 70.2 11.7 2.2e-14 53.6 6.2 3.1 2 1 1 3 3 3 3 PQQ-like domain PQQ PF01011.21 gi|257387259|ref|YP_003177032.1| - 2.9e-12 45.9 8.6 0.00014 21.6 0.1 4.6 4 1 0 4 4 4 3 PQQ enzyme repeat PQQ_3 PF13570.6 gi|257387259|ref|YP_003177032.1| - 2.5e-11 43.7 26.9 0.0013 19.2 0.0 8.2 8 0 0 8 8 8 3 PQQ-like domain Sec16_N PF12935.7 gi|257387259|ref|YP_003177032.1| - 0.17 12.0 0.7 0.32 11.1 0.3 1.5 2 0 0 2 2 2 0 Vesicle coat trafficking protein Sec16 N-terminus Met_10 PF02475.16 gi|257387260|ref|YP_003177033.1| - 9.1e-47 159.4 0.0 2e-27 96.2 0.0 2.2 2 0 0 2 2 2 2 Met-10+ like-protein Methyltransf_25 PF13649.6 gi|257387260|ref|YP_003177033.1| - 4.6e-07 30.4 0.0 1.2e-05 25.9 0.0 2.5 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_24 PF13578.6 gi|257387260|ref|YP_003177033.1| - 4.7e-06 27.6 0.3 2.1e-05 25.5 0.0 2.2 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|257387260|ref|YP_003177033.1| - 7.1e-05 22.4 0.0 9.7e-05 22.0 0.0 1.2 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Cons_hypoth95 PF03602.15 gi|257387260|ref|YP_003177033.1| - 0.00013 21.6 0.0 0.00027 20.6 0.0 1.5 1 0 0 1 1 1 1 Conserved hypothetical protein 95 SAM_MT PF04445.13 gi|257387260|ref|YP_003177033.1| - 0.0031 17.0 0.0 0.0044 16.5 0.0 1.2 1 0 0 1 1 1 1 Putative SAM-dependent methyltransferase MTS PF05175.14 gi|257387260|ref|YP_003177033.1| - 0.0037 16.8 0.0 0.0069 15.9 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_23 PF13489.6 gi|257387260|ref|YP_003177033.1| - 0.011 15.5 0.0 0.05 13.5 0.0 2.0 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_11 PF08241.12 gi|257387260|ref|YP_003177033.1| - 0.019 15.6 0.0 0.08 13.6 0.0 2.1 2 0 0 2 2 2 0 Methyltransferase domain Methyltransf_31 PF13847.6 gi|257387260|ref|YP_003177033.1| - 0.16 11.8 0.0 0.25 11.1 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain tRNA_U5-meth_tr PF05958.11 gi|257387260|ref|YP_003177033.1| - 0.16 10.9 0.0 0.22 10.5 0.0 1.1 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase PrmA PF06325.13 gi|257387260|ref|YP_003177033.1| - 0.21 10.9 0.0 0.35 10.2 0.0 1.3 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) DNA_methylase PF00145.17 gi|257387260|ref|YP_003177033.1| - 0.23 10.8 0.0 0.28 10.5 0.0 1.1 1 0 0 1 1 1 0 C-5 cytosine-specific DNA methylase hemP PF10636.9 gi|257387262|ref|YP_003177035.1| - 0.19 11.6 0.2 3 7.7 0.0 2.5 2 0 0 2 2 2 0 Hemin uptake protein hemP TAT_signal PF10518.9 gi|257387262|ref|YP_003177035.1| - 0.74 9.8 5.1 1.2 9.1 5.1 1.3 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Helicase_C_2 PF13307.6 gi|257387263|ref|YP_003177036.1| - 8.3e-21 74.9 0.0 1.3e-20 74.3 0.0 1.3 1 0 0 1 1 1 1 Helicase C-terminal domain ResIII PF04851.15 gi|257387263|ref|YP_003177036.1| - 0.00018 21.6 0.0 0.037 14.0 0.0 2.4 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_30 PF13604.6 gi|257387263|ref|YP_003177036.1| - 0.00023 20.9 0.1 0.15 11.8 0.0 2.5 2 1 0 2 2 2 2 AAA domain DEAD PF00270.29 gi|257387263|ref|YP_003177036.1| - 0.00024 20.9 0.1 0.12 12.1 0.0 2.6 3 0 0 3 3 3 2 DEAD/DEAH box helicase DEAD_2 PF06733.15 gi|257387263|ref|YP_003177036.1| - 0.00031 20.4 0.0 0.00053 19.7 0.0 1.3 1 0 0 1 1 1 1 DEAD_2 AAA_22 PF13401.6 gi|257387263|ref|YP_003177036.1| - 0.0042 17.4 0.0 0.029 14.6 0.0 2.2 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|257387263|ref|YP_003177036.1| - 0.0068 16.8 1.4 0.021 15.2 0.1 2.3 1 1 0 2 2 2 1 AAA ATPase domain AAA_25 PF13481.6 gi|257387263|ref|YP_003177036.1| - 0.053 13.1 1.6 5.2 6.6 0.0 3.6 4 0 0 4 4 4 0 AAA domain Mg_chelatase PF01078.21 gi|257387263|ref|YP_003177036.1| - 0.058 12.8 0.0 0.092 12.1 0.0 1.2 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI PhoH PF02562.16 gi|257387263|ref|YP_003177036.1| - 0.063 12.7 0.0 0.12 11.8 0.0 1.4 1 0 0 1 1 1 0 PhoH-like protein IstB_IS21 PF01695.17 gi|257387263|ref|YP_003177036.1| - 0.19 11.4 0.0 0.36 10.5 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein Pilin_N PF07790.11 gi|257387264|ref|YP_003177037.1| - 7.6e-05 23.6 0.3 0.00022 22.1 0.0 1.9 2 0 0 2 2 2 1 Archaeal Type IV pilin, N-terminal Acetyltransf_13 PF13880.6 gi|257387265|ref|YP_003177038.1| - 0.078 13.0 0.0 0.086 12.8 0.0 1.2 1 0 0 1 1 1 0 ESCO1/2 acetyl-transferase Wyosine_form PF08608.12 gi|257387266|ref|YP_003177039.1| - 1.3e-18 67.1 0.2 3.3e-18 65.8 0.2 1.8 1 0 0 1 1 1 1 Wyosine base formation Radical_SAM PF04055.21 gi|257387266|ref|YP_003177039.1| - 5.5e-18 65.9 0.2 1e-17 65.0 0.2 1.5 1 1 0 1 1 1 1 Radical SAM superfamily L27 PF02828.16 gi|257387267|ref|YP_003177040.1| - 0.007 16.1 0.1 0.023 14.5 0.1 1.9 1 0 0 1 1 1 1 L27 domain bPH_3 PF14470.6 gi|257387267|ref|YP_003177040.1| - 0.21 12.0 0.0 0.36 11.2 0.0 1.3 1 0 0 1 1 1 0 Bacterial PH domain YfdX PF10938.8 gi|257387267|ref|YP_003177040.1| - 0.24 11.3 6.8 0.78 9.7 6.0 2.2 1 1 0 1 1 1 0 YfdX protein DUF848 PF05852.11 gi|257387267|ref|YP_003177040.1| - 0.31 11.1 3.6 2.7 8.1 0.0 3.2 2 1 1 3 3 3 0 Gammaherpesvirus protein of unknown function (DUF848) PMEI PF04043.15 gi|257387267|ref|YP_003177040.1| - 0.88 9.9 14.6 0.095 13.0 1.1 3.2 2 1 0 3 3 3 0 Plant invertase/pectin methylesterase inhibitor T3SSipB PF16535.5 gi|257387267|ref|YP_003177040.1| - 2.1 8.8 20.3 6.7 7.2 1.1 3.4 1 1 3 4 4 4 0 Type III cell invasion protein SipB TPR_7 PF13176.6 gi|257387267|ref|YP_003177040.1| - 9.4 6.5 8.9 4.3 7.6 0.6 3.8 2 1 2 4 4 4 0 Tetratricopeptide repeat Sulfatase PF00884.23 gi|257387269|ref|YP_003177042.1| - 2.5e-36 125.7 0.1 4e-36 125.0 0.1 1.3 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 gi|257387269|ref|YP_003177042.1| - 4.3e-10 39.7 1.7 5.3e-06 26.3 0.1 2.4 2 1 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase Metalloenzyme PF01676.18 gi|257387269|ref|YP_003177042.1| - 4.4e-06 26.3 0.9 0.0046 16.4 0.3 2.2 2 0 0 2 2 2 2 Metalloenzyme superfamily DUF229 PF02995.17 gi|257387269|ref|YP_003177042.1| - 0.0007 18.3 0.1 0.00097 17.9 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF229) Phosphoesterase PF04185.14 gi|257387269|ref|YP_003177042.1| - 0.0045 16.2 1.4 0.18 10.9 0.1 2.9 3 0 0 3 3 3 1 Phosphoesterase family DUF1501 PF07394.12 gi|257387269|ref|YP_003177042.1| - 0.047 12.7 0.0 0.092 11.8 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1501) DUF840 PF05801.11 gi|257387269|ref|YP_003177042.1| - 0.12 12.4 0.0 7.7 6.6 0.0 2.3 2 0 0 2 2 2 0 Lagovirus protein of unknown function (DUF840) Alk_phosphatase PF00245.20 gi|257387269|ref|YP_003177042.1| - 0.13 11.2 0.4 0.23 10.4 0.0 1.5 2 0 0 2 2 2 0 Alkaline phosphatase Polysacc_synt PF01943.17 gi|257387270|ref|YP_003177043.1| - 7e-21 74.8 23.6 7e-21 74.8 23.6 2.8 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.6 gi|257387270|ref|YP_003177043.1| - 2.7e-17 62.9 13.9 2.7e-17 62.9 13.9 2.1 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|257387270|ref|YP_003177043.1| - 1.2e-10 41.6 23.3 1.2e-10 41.6 23.3 4.3 3 1 0 3 3 3 1 Polysaccharide biosynthesis C-terminal domain MatE PF01554.18 gi|257387270|ref|YP_003177043.1| - 2.8e-07 30.3 7.3 2.8e-07 30.3 7.3 4.5 3 1 1 5 5 5 1 MatE dTDP_sugar_isom PF00908.17 gi|257387271|ref|YP_003177044.1| - 1.2e-14 54.3 0.0 1.4e-14 54.2 0.0 1.0 1 0 0 1 1 1 1 dTDP-4-dehydrorhamnose 3,5-epimerase FdtA PF05523.11 gi|257387271|ref|YP_003177044.1| - 5.5e-06 26.1 0.0 8.1e-06 25.6 0.0 1.2 1 0 0 1 1 1 1 WxcM-like, C-terminal Cupin_2 PF07883.11 gi|257387271|ref|YP_003177044.1| - 0.0025 17.5 1.1 0.067 12.9 1.1 2.2 1 1 0 1 1 1 1 Cupin domain NTP_transferase PF00483.23 gi|257387272|ref|YP_003177045.1| - 1.2e-54 185.5 0.0 1.5e-54 185.2 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|257387272|ref|YP_003177045.1| - 6.4e-10 39.6 0.0 8.6e-10 39.2 0.0 1.3 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.24 gi|257387272|ref|YP_003177045.1| - 2e-06 27.3 1.2 0.0033 17.1 0.1 3.6 2 1 1 3 3 3 2 Bacterial transferase hexapeptide (six repeats) IspD PF01128.19 gi|257387272|ref|YP_003177045.1| - 0.004 16.9 0.0 0.0071 16.1 0.0 1.4 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DNA_ligase_ZBD PF03119.16 gi|257387273|ref|YP_003177046.1| - 0.00063 19.7 2.7 0.0011 19.0 2.7 1.4 1 0 0 1 1 1 1 NAD-dependent DNA ligase C4 zinc finger domain zf-ACC PF17848.1 gi|257387273|ref|YP_003177046.1| - 0.002 18.2 2.1 0.017 15.2 0.1 2.4 2 1 0 2 2 2 1 Acetyl-coA carboxylase zinc finger domain GAGA PF09237.11 gi|257387273|ref|YP_003177046.1| - 0.37 10.6 2.3 3.5 7.5 0.2 2.1 2 0 0 2 2 2 0 GAGA factor RmlD_sub_bind PF04321.17 gi|257387274|ref|YP_003177047.1| - 2.6e-70 236.8 0.0 2.9e-70 236.6 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.21 gi|257387274|ref|YP_003177047.1| - 1.1e-22 80.7 0.0 1.4e-22 80.4 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|257387274|ref|YP_003177047.1| - 1.4e-13 51.0 0.1 4.6e-13 49.3 0.1 1.7 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase NAD_binding_4 PF07993.12 gi|257387274|ref|YP_003177047.1| - 1.1e-06 28.0 0.0 3.3e-06 26.4 0.0 1.8 1 1 0 1 1 1 1 Male sterility protein Polysacc_synt_2 PF02719.15 gi|257387274|ref|YP_003177047.1| - 2.4e-06 26.9 0.1 9.2e-06 25.0 0.0 2.0 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.19 gi|257387274|ref|YP_003177047.1| - 0.0064 15.5 0.1 0.014 14.5 0.1 1.5 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family GDP_Man_Dehyd PF16363.5 gi|257387275|ref|YP_003177048.1| - 2.1e-76 257.5 0.0 2.4e-76 257.3 0.0 1.0 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|257387275|ref|YP_003177048.1| - 1e-63 215.0 0.0 1.3e-63 214.7 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|257387275|ref|YP_003177048.1| - 8.4e-23 80.8 0.0 1.1e-22 80.3 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|257387275|ref|YP_003177048.1| - 3.6e-19 69.0 0.0 4.3e-19 68.7 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|257387275|ref|YP_003177048.1| - 1.7e-18 66.8 0.0 9.8e-18 64.3 0.0 1.8 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.12 gi|257387275|ref|YP_003177048.1| - 3.3e-15 55.9 0.0 4.2e-14 52.4 0.0 2.3 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.6 gi|257387275|ref|YP_003177048.1| - 2.7e-11 43.7 0.0 4.3e-11 43.1 0.0 1.3 1 0 0 1 1 1 1 NAD(P)H-binding NmrA PF05368.13 gi|257387275|ref|YP_003177048.1| - 7.7e-05 22.4 0.0 0.00013 21.6 0.0 1.3 1 0 0 1 1 1 1 NmrA-like family adh_short PF00106.25 gi|257387275|ref|YP_003177048.1| - 0.018 14.5 0.0 0.87 9.0 0.0 2.4 2 0 0 2 2 2 0 short chain dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|257387275|ref|YP_003177048.1| - 0.075 13.3 0.2 0.19 12.0 0.1 1.8 2 0 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain KR PF08659.10 gi|257387275|ref|YP_003177048.1| - 0.077 12.9 0.0 0.44 10.4 0.0 2.2 1 1 0 1 1 1 0 KR domain NUDIX PF00293.28 gi|257387276|ref|YP_003177049.1| - 2.5e-11 43.7 0.0 3.1e-11 43.4 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain DDE_Tnp_1 PF01609.21 gi|257387277|ref|YP_003177050.1| - 4.1e-12 46.2 4.2 4.7e-11 42.7 4.2 2.1 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_5 PF13737.6 gi|257387277|ref|YP_003177050.1| - 0.11 12.8 0.0 0.21 11.9 0.0 1.4 1 0 0 1 1 1 0 Transposase DDE domain DUF4212 PF13937.6 gi|257387278|ref|YP_003177051.1| - 3.2e-19 69.1 0.0 4e-19 68.8 0.0 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4212) SSF PF00474.17 gi|257387279|ref|YP_003177052.1| - 2e-50 171.9 31.4 2.7e-50 171.4 31.4 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family Usp PF00582.26 gi|257387280|ref|YP_003177053.1| - 2e-39 135.3 2.6 2.3e-39 135.1 2.6 1.0 1 0 0 1 1 1 1 Universal stress protein family ETF PF01012.21 gi|257387280|ref|YP_003177053.1| - 0.0037 17.2 1.0 0.048 13.5 1.0 2.2 1 1 0 1 1 1 1 Electron transfer flavoprotein domain GARS_N PF02844.15 gi|257387280|ref|YP_003177053.1| - 0.086 13.6 0.1 0.3 11.9 0.1 1.8 1 1 0 1 1 1 0 Phosphoribosylglycinamide synthetase, N domain TMEM208_SND2 PF05620.11 gi|257387281|ref|YP_003177054.1| - 0.017 14.9 0.7 0.018 14.8 0.7 1.0 1 0 0 1 1 1 0 SRP-independent targeting protein 2/TMEM208 SRP54 PF00448.22 gi|257387282|ref|YP_003177055.1| - 9.2e-59 198.4 0.4 1.4e-58 197.8 0.4 1.3 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP_SPB PF02978.19 gi|257387282|ref|YP_003177055.1| - 2.1e-29 102.0 4.9 2.1e-29 102.0 4.9 2.8 3 0 0 3 3 2 1 Signal peptide binding domain SRP54_N PF02881.19 gi|257387282|ref|YP_003177055.1| - 1.3e-17 63.8 0.2 7.8e-17 61.3 0.0 2.4 2 0 0 2 2 2 1 SRP54-type protein, helical bundle domain CbiA PF01656.23 gi|257387282|ref|YP_003177055.1| - 7.6e-06 26.0 0.0 1.9e-05 24.7 0.0 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ArsA_ATPase PF02374.15 gi|257387282|ref|YP_003177055.1| - 0.0008 18.7 4.5 0.034 13.3 0.0 3.1 3 0 0 3 3 3 1 Anion-transporting ATPase cobW PF02492.19 gi|257387282|ref|YP_003177055.1| - 0.002 17.7 0.2 0.042 13.5 0.2 2.4 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain SMC_N PF02463.19 gi|257387282|ref|YP_003177055.1| - 0.0025 17.3 0.0 0.0041 16.6 0.0 1.3 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|257387282|ref|YP_003177055.1| - 0.0045 17.3 0.0 0.026 14.8 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_24 PF13479.6 gi|257387282|ref|YP_003177055.1| - 0.019 14.7 0.1 0.052 13.3 0.1 1.8 1 1 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|257387282|ref|YP_003177055.1| - 0.048 14.2 0.1 0.23 12.0 0.0 2.2 2 1 0 2 2 2 0 AAA domain TrwB_AAD_bind PF10412.9 gi|257387282|ref|YP_003177055.1| - 0.052 12.4 0.0 0.098 11.6 0.0 1.4 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain MobB PF03205.14 gi|257387282|ref|YP_003177055.1| - 0.056 13.3 0.0 0.16 11.8 0.0 1.8 2 0 0 2 2 1 0 Molybdopterin guanine dinucleotide synthesis protein B ATPase PF06745.13 gi|257387282|ref|YP_003177055.1| - 0.056 12.8 0.1 0.18 11.1 0.0 1.9 2 0 0 2 2 2 0 KaiC AAA_31 PF13614.6 gi|257387282|ref|YP_003177055.1| - 0.076 12.9 0.0 0.16 11.9 0.0 1.5 1 0 0 1 1 1 0 AAA domain CARD PF00619.21 gi|257387282|ref|YP_003177055.1| - 0.1 12.7 1.2 0.37 10.9 0.1 2.3 2 0 0 2 2 2 0 Caspase recruitment domain APS_kinase PF01583.20 gi|257387282|ref|YP_003177055.1| - 0.11 12.4 0.0 0.21 11.5 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase PRK PF00485.18 gi|257387282|ref|YP_003177055.1| - 0.12 12.1 0.0 0.27 10.9 0.0 1.7 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_33 PF13671.6 gi|257387282|ref|YP_003177055.1| - 0.14 12.3 0.0 0.31 11.2 0.0 1.6 1 0 0 1 1 1 0 AAA domain SRPRB PF09439.10 gi|257387282|ref|YP_003177055.1| - 0.17 11.3 0.0 19 4.6 0.0 2.4 2 0 0 2 2 2 0 Signal recognition particle receptor beta subunit AAA_23 PF13476.6 gi|257387282|ref|YP_003177055.1| - 0.23 12.0 1.3 3 8.3 1.3 2.3 1 1 0 1 1 1 0 AAA domain RAB3GAP2_C PF14656.6 gi|257387282|ref|YP_003177055.1| - 0.23 9.7 0.0 0.33 9.1 0.0 1.2 1 0 0 1 1 1 0 Rab3 GTPase-activating protein regulatory subunit C-terminus YppG PF14179.6 gi|257387282|ref|YP_003177055.1| - 8.6 7.1 8.1 0.81 10.4 1.8 2.2 2 0 0 2 2 2 0 YppG-like protein Cupin_2 PF07883.11 gi|257387283|ref|YP_003177056.1| - 5.8e-12 45.2 0.4 7.5e-12 44.8 0.4 1.2 1 0 0 1 1 1 1 Cupin domain MannoseP_isomer PF01050.18 gi|257387283|ref|YP_003177056.1| - 9.7e-05 22.3 0.0 0.00012 22.0 0.0 1.1 1 0 0 1 1 1 1 Mannose-6-phosphate isomerase DMSP_lyase PF16867.5 gi|257387283|ref|YP_003177056.1| - 0.00058 19.5 0.1 0.00078 19.1 0.1 1.1 1 0 0 1 1 1 1 Dimethlysulfonioproprionate lyase Cupin_7 PF12973.7 gi|257387283|ref|YP_003177056.1| - 0.001 18.9 0.0 0.0013 18.6 0.0 1.2 1 0 0 1 1 1 1 ChrR Cupin-like domain KduI PF04962.12 gi|257387283|ref|YP_003177056.1| - 0.0032 16.8 0.0 0.0039 16.5 0.0 1.1 1 0 0 1 1 1 1 KduI/IolB family AraC_binding PF02311.19 gi|257387283|ref|YP_003177056.1| - 0.014 15.3 0.0 0.019 14.9 0.0 1.2 1 0 0 1 1 1 0 AraC-like ligand binding domain FdtA PF05523.11 gi|257387283|ref|YP_003177056.1| - 0.029 14.1 0.0 0.037 13.7 0.0 1.2 1 0 0 1 1 1 0 WxcM-like, C-terminal Aldolase PF01081.19 gi|257387284|ref|YP_003177057.1| - 1.1e-41 142.5 3.5 1.2e-41 142.3 3.5 1.0 1 0 0 1 1 1 1 KDPG and KHG aldolase TMP-TENI PF02581.17 gi|257387284|ref|YP_003177057.1| - 0.0069 15.7 3.2 2.4 7.5 3.2 3.1 1 1 0 1 1 1 1 Thiamine monophosphate synthase DHO_dh PF01180.21 gi|257387284|ref|YP_003177057.1| - 0.025 13.8 10.0 0.2 10.8 0.2 2.9 1 1 2 3 3 3 0 Dihydroorotate dehydrogenase SRP54 PF00448.22 gi|257387285|ref|YP_003177058.1| - 4.8e-68 228.7 0.3 6.6e-68 228.2 0.3 1.2 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain SRP54_N PF02881.19 gi|257387285|ref|YP_003177058.1| - 4.1e-11 43.0 0.7 4.1e-11 43.0 0.7 2.4 2 0 0 2 2 2 1 SRP54-type protein, helical bundle domain AAA_17 PF13207.6 gi|257387285|ref|YP_003177058.1| - 9.3e-07 29.4 0.7 1e-05 26.0 0.1 2.6 2 0 0 2 2 2 1 AAA domain APS_kinase PF01583.20 gi|257387285|ref|YP_003177058.1| - 4.8e-06 26.6 0.4 1.1e-05 25.4 0.1 1.7 2 0 0 2 2 1 1 Adenylylsulphate kinase Zeta_toxin PF06414.12 gi|257387285|ref|YP_003177058.1| - 2.3e-05 23.8 0.1 3.7e-05 23.1 0.1 1.3 1 0 0 1 1 1 1 Zeta toxin Thymidylate_kin PF02223.17 gi|257387285|ref|YP_003177058.1| - 2.3e-05 24.1 0.1 0.0025 17.5 0.0 2.4 2 0 0 2 2 2 1 Thymidylate kinase AAA_33 PF13671.6 gi|257387285|ref|YP_003177058.1| - 4.4e-05 23.7 0.1 0.00011 22.3 0.0 1.7 2 0 0 2 2 1 1 AAA domain AAA_30 PF13604.6 gi|257387285|ref|YP_003177058.1| - 8.5e-05 22.4 0.9 8.5e-05 22.4 0.9 1.9 2 1 0 2 2 2 1 AAA domain AAA_18 PF13238.6 gi|257387285|ref|YP_003177058.1| - 0.00042 20.9 0.0 0.0016 18.9 0.0 2.1 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|257387285|ref|YP_003177058.1| - 0.00057 20.3 0.1 0.00057 20.3 0.1 2.5 2 1 0 2 2 2 1 AAA ATPase domain AAA_28 PF13521.6 gi|257387285|ref|YP_003177058.1| - 0.0012 19.1 0.5 0.0012 19.1 0.5 2.7 3 1 0 3 3 2 1 AAA domain NTPase_1 PF03266.15 gi|257387285|ref|YP_003177058.1| - 0.0024 17.8 0.5 0.0053 16.7 0.5 1.5 1 0 0 1 1 1 1 NTPase AAA_22 PF13401.6 gi|257387285|ref|YP_003177058.1| - 0.0037 17.5 0.0 0.011 16.1 0.0 1.7 2 0 0 2 2 1 1 AAA domain cobW PF02492.19 gi|257387285|ref|YP_003177058.1| - 0.006 16.2 1.4 0.0069 16.0 0.3 1.6 2 0 0 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain DUF2075 PF09848.9 gi|257387285|ref|YP_003177058.1| - 0.01 15.1 0.0 0.019 14.2 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) CbiA PF01656.23 gi|257387285|ref|YP_003177058.1| - 0.015 15.3 0.0 0.031 14.4 0.0 1.6 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain MeaB PF03308.16 gi|257387285|ref|YP_003177058.1| - 0.019 13.9 0.1 0.036 13.0 0.1 1.4 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB PPK2 PF03976.14 gi|257387285|ref|YP_003177058.1| - 0.032 13.7 0.0 0.051 13.1 0.0 1.2 1 0 0 1 1 1 0 Polyphosphate kinase 2 (PPK2) KTI12 PF08433.10 gi|257387285|ref|YP_003177058.1| - 0.036 13.5 0.0 0.057 12.9 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 AAA_31 PF13614.6 gi|257387285|ref|YP_003177058.1| - 0.037 13.9 0.1 0.13 12.2 0.1 1.9 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.6 gi|257387285|ref|YP_003177058.1| - 0.047 14.0 1.5 0.049 14.0 0.1 1.7 2 0 0 2 2 1 0 AAA domain AAA_14 PF13173.6 gi|257387285|ref|YP_003177058.1| - 0.058 13.4 0.0 0.17 11.9 0.0 1.8 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|257387285|ref|YP_003177058.1| - 0.09 12.7 0.1 0.33 10.8 0.0 1.9 1 1 0 2 2 2 0 RsgA GTPase AAA_5 PF07728.14 gi|257387285|ref|YP_003177058.1| - 0.11 12.5 0.0 0.24 11.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) AAA_29 PF13555.6 gi|257387285|ref|YP_003177058.1| - 0.11 12.2 0.0 0.27 11.0 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA PF00004.29 gi|257387285|ref|YP_003177058.1| - 0.14 12.6 0.2 0.41 11.1 0.2 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 gi|257387285|ref|YP_003177058.1| - 0.21 11.1 0.0 0.4 10.2 0.0 1.4 1 0 0 1 1 1 0 P-loop containing dynein motor region ArsA_ATPase PF02374.15 gi|257387285|ref|YP_003177058.1| - 0.24 10.5 1.2 0.58 9.3 0.5 1.7 1 1 1 2 2 2 0 Anion-transporting ATPase AIF-MLS PF14962.6 gi|257387285|ref|YP_003177058.1| - 3 7.8 9.5 6.5 6.7 9.5 1.5 1 0 0 1 1 1 0 Mitochondria Localisation Sequence Prefoldin PF02996.17 gi|257387286|ref|YP_003177059.1| - 9.4e-24 83.6 7.5 9.4e-24 83.6 7.5 1.8 1 1 0 1 1 1 1 Prefoldin subunit Prefoldin_2 PF01920.20 gi|257387286|ref|YP_003177059.1| - 2.6e-09 37.0 23.5 8.3e-05 22.5 6.6 2.5 1 1 1 2 2 2 2 Prefoldin subunit APG6_N PF17675.1 gi|257387286|ref|YP_003177059.1| - 3.1e-05 24.5 25.4 0.014 15.9 9.6 2.1 2 0 0 2 2 2 2 Apg6 coiled-coil region Uds1 PF15456.6 gi|257387286|ref|YP_003177059.1| - 0.00046 20.4 5.0 0.0007 19.8 5.0 1.3 1 0 0 1 1 1 1 Up-regulated During Septation ZapB PF06005.12 gi|257387286|ref|YP_003177059.1| - 0.00046 20.6 26.1 0.017 15.6 10.2 2.4 2 0 0 2 2 2 2 Cell division protein ZapB XhlA PF10779.9 gi|257387286|ref|YP_003177059.1| - 0.00059 20.0 19.6 0.0017 18.5 4.7 2.3 2 0 0 2 2 2 1 Haemolysin XhlA FliD_C PF07195.12 gi|257387286|ref|YP_003177059.1| - 0.0012 18.3 10.6 0.0027 17.2 3.6 2.1 2 0 0 2 2 2 1 Flagellar hook-associated protein 2 C-terminus Nsp1_C PF05064.13 gi|257387286|ref|YP_003177059.1| - 0.0012 18.6 4.5 0.0012 18.6 4.5 2.3 2 0 0 2 2 2 1 Nsp1-like C-terminal region Tropomyosin_1 PF12718.7 gi|257387286|ref|YP_003177059.1| - 0.0014 18.8 24.7 0.12 12.5 11.1 2.1 2 0 0 2 2 2 2 Tropomyosin like CENP-F_leu_zip PF10473.9 gi|257387286|ref|YP_003177059.1| - 0.0017 18.4 21.4 0.019 15.0 7.8 2.2 2 0 0 2 2 2 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF812 PF05667.11 gi|257387286|ref|YP_003177059.1| - 0.0021 17.1 20.4 0.027 13.4 8.0 2.0 2 0 0 2 2 2 2 Protein of unknown function (DUF812) DUF3450 PF11932.8 gi|257387286|ref|YP_003177059.1| - 0.0028 17.0 20.4 0.13 11.6 9.3 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF3450) Spc24 PF08286.11 gi|257387286|ref|YP_003177059.1| - 0.0029 17.8 18.2 0.097 12.9 0.9 2.2 2 0 0 2 2 2 2 Spc24 subunit of Ndc80 GAS PF13851.6 gi|257387286|ref|YP_003177059.1| - 0.003 16.9 12.8 0.098 12.0 3.6 2.1 2 0 0 2 2 2 2 Growth-arrest specific micro-tubule binding DUF4795 PF16043.5 gi|257387286|ref|YP_003177059.1| - 0.0036 16.9 12.7 0.063 12.9 1.8 2.2 2 0 0 2 2 2 2 Domain of unknown function (DUF4795) APG17 PF04108.12 gi|257387286|ref|YP_003177059.1| - 0.0038 16.4 11.2 0.068 12.3 1.9 2.0 2 0 0 2 2 2 2 Autophagy protein Apg17 DivIC PF04977.15 gi|257387286|ref|YP_003177059.1| - 0.0055 16.5 5.7 0.0055 16.5 5.7 3.4 2 1 1 3 3 2 1 Septum formation initiator YabA PF06156.13 gi|257387286|ref|YP_003177059.1| - 0.0061 17.2 13.6 0.18 12.5 0.5 2.1 2 0 0 2 2 2 1 Initiation control protein YabA ORF6C PF10552.9 gi|257387286|ref|YP_003177059.1| - 0.0064 16.6 12.2 0.057 13.5 1.1 2.3 2 0 0 2 2 2 1 ORF6C domain GTP-bdg_M PF16360.5 gi|257387286|ref|YP_003177059.1| - 0.0065 17.0 8.7 0.032 14.8 0.7 2.6 2 1 0 2 2 2 1 GTP-binding GTPase Middle Region Uso1_p115_C PF04871.13 gi|257387286|ref|YP_003177059.1| - 0.0071 16.7 15.4 0.34 11.3 0.7 2.1 2 0 0 2 2 2 2 Uso1 / p115 like vesicle tethering protein, C terminal region COG2 PF06148.11 gi|257387286|ref|YP_003177059.1| - 0.008 16.3 9.5 0.12 12.5 1.2 2.2 2 0 0 2 2 2 1 COG (conserved oligomeric Golgi) complex component, COG2 Hemerythrin PF01814.23 gi|257387286|ref|YP_003177059.1| - 0.0081 16.8 7.8 0.27 11.9 0.4 2.2 1 1 1 2 2 2 1 Hemerythrin HHE cation binding domain Spc7 PF08317.11 gi|257387286|ref|YP_003177059.1| - 0.0087 15.0 17.9 0.12 11.2 4.4 2.1 2 0 0 2 2 2 2 Spc7 kinetochore protein Sugarporin_N PF11471.8 gi|257387286|ref|YP_003177059.1| - 0.0087 16.0 3.3 0.0087 16.0 3.3 1.9 2 0 0 2 2 1 1 Maltoporin periplasmic N-terminal extension ADIP PF11559.8 gi|257387286|ref|YP_003177059.1| - 0.01 15.9 14.2 0.013 15.6 4.2 2.1 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding Fib_alpha PF08702.10 gi|257387286|ref|YP_003177059.1| - 0.014 15.6 12.9 0.34 11.1 6.3 2.2 2 0 0 2 2 2 0 Fibrinogen alpha/beta chain family Baculo_PEP_C PF04513.12 gi|257387286|ref|YP_003177059.1| - 0.015 15.4 8.5 0.7 9.9 0.2 2.2 2 0 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus Laminin_I PF06008.14 gi|257387286|ref|YP_003177059.1| - 0.015 15.0 15.3 0.19 11.4 1.7 2.1 2 0 0 2 2 2 0 Laminin Domain I Sec34 PF04136.15 gi|257387286|ref|YP_003177059.1| - 0.015 15.2 15.1 0.1 12.5 2.8 2.1 2 0 0 2 2 2 0 Sec34-like family DUF724 PF05266.14 gi|257387286|ref|YP_003177059.1| - 0.015 15.1 14.3 0.077 12.8 3.6 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF724) FlaC_arch PF05377.11 gi|257387286|ref|YP_003177059.1| - 0.02 15.3 22.2 0.56 10.6 4.7 3.3 3 1 0 3 3 2 0 Flagella accessory protein C (FlaC) TPR_MLP1_2 PF07926.12 gi|257387286|ref|YP_003177059.1| - 0.021 14.9 26.0 0.023 14.8 12.2 2.2 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein ACCA PF03255.14 gi|257387286|ref|YP_003177059.1| - 0.022 14.6 8.4 0.88 9.4 0.1 2.2 2 0 0 2 2 2 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit Allexi_40kDa PF05549.11 gi|257387286|ref|YP_003177059.1| - 0.025 14.1 3.0 0.69 9.4 0.5 2.0 2 0 0 2 2 2 0 Allexivirus 40kDa protein bZIP_1 PF00170.21 gi|257387286|ref|YP_003177059.1| - 0.025 14.7 12.9 0.65 10.1 2.0 2.4 2 0 0 2 2 2 0 bZIP transcription factor Ax_dynein_light PF10211.9 gi|257387286|ref|YP_003177059.1| - 0.029 14.3 21.7 0.31 11.0 10.8 2.1 2 0 0 2 2 2 0 Axonemal dynein light chain HMMR_N PF15905.5 gi|257387286|ref|YP_003177059.1| - 0.03 13.8 14.1 0.35 10.3 6.6 2.0 2 0 0 2 2 2 0 Hyaluronan mediated motility receptor N-terminal TSC22 PF01166.18 gi|257387286|ref|YP_003177059.1| - 0.037 14.3 3.8 0.037 14.3 3.8 2.8 2 1 1 3 3 3 0 TSC-22/dip/bun family TFR_dimer PF04253.15 gi|257387286|ref|YP_003177059.1| - 0.039 14.1 1.9 2.1 8.5 0.5 2.3 2 0 0 2 2 2 0 Transferrin receptor-like dimerisation domain Not3 PF04065.15 gi|257387286|ref|YP_003177059.1| - 0.043 13.2 14.5 0.071 12.5 3.5 2.1 2 0 0 2 2 2 0 Not1 N-terminal domain, CCR4-Not complex component DUF5082 PF16888.5 gi|257387286|ref|YP_003177059.1| - 0.048 13.9 22.9 0.098 12.9 5.2 2.5 2 1 1 3 3 3 0 Domain of unknown function (DUF5082) Tektin PF03148.14 gi|257387286|ref|YP_003177059.1| - 0.064 12.0 17.9 0.15 10.8 4.2 2.2 2 0 0 2 2 2 0 Tektin family DUF4988 PF16378.5 gi|257387286|ref|YP_003177059.1| - 0.065 12.9 9.8 0.51 10.0 1.8 2.3 1 1 0 2 2 2 0 Domain of unknown function Snf7 PF03357.21 gi|257387286|ref|YP_003177059.1| - 0.078 12.6 23.4 0.17 11.5 1.9 2.7 2 1 0 2 2 2 0 Snf7 DUF2681 PF10883.8 gi|257387286|ref|YP_003177059.1| - 0.087 13.2 14.6 0.13 12.7 1.4 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2681) CENP-H PF05837.12 gi|257387286|ref|YP_003177059.1| - 0.092 13.2 10.7 0.36 11.2 2.5 2.2 2 0 0 2 2 2 0 Centromere protein H (CENP-H) Dynamitin PF04912.14 gi|257387286|ref|YP_003177059.1| - 0.096 12.0 16.4 0.029 13.7 3.9 2.1 2 0 0 2 2 2 0 Dynamitin DUF2730 PF10805.8 gi|257387286|ref|YP_003177059.1| - 0.098 12.8 9.1 1.2 9.3 2.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF2730) Golgin_A5 PF09787.9 gi|257387286|ref|YP_003177059.1| - 0.1 12.0 22.5 0.23 10.9 10.7 2.1 2 0 0 2 2 2 0 Golgin subfamily A member 5 THOC7 PF05615.13 gi|257387286|ref|YP_003177059.1| - 0.1 12.8 26.1 0.91 9.8 9.2 2.4 2 1 0 2 2 2 0 Tho complex subunit 7 Jnk-SapK_ap_N PF09744.9 gi|257387286|ref|YP_003177059.1| - 0.11 12.7 18.7 0.027 14.7 5.5 2.1 2 0 0 2 2 2 0 JNK_SAPK-associated protein-1 FliD_N PF02465.18 gi|257387286|ref|YP_003177059.1| - 0.12 13.1 0.6 0.12 13.1 0.6 2.9 1 1 1 2 2 1 0 Flagellar hook-associated protein 2 N-terminus zf-CpG_bind_C PF12269.8 gi|257387286|ref|YP_003177059.1| - 0.12 12.1 13.0 0.58 9.9 1.8 2.0 2 0 0 2 2 2 0 CpG binding protein zinc finger C terminal domain Nup54 PF13874.6 gi|257387286|ref|YP_003177059.1| - 0.16 12.1 15.5 0.39 10.8 1.3 2.1 2 0 0 2 2 2 0 Nucleoporin complex subunit 54 EMP24_GP25L PF01105.24 gi|257387286|ref|YP_003177059.1| - 0.17 11.8 14.5 0.61 10.0 2.8 2.2 2 0 0 2 2 2 0 emp24/gp25L/p24 family/GOLD EzrA PF06160.12 gi|257387286|ref|YP_003177059.1| - 0.17 10.0 20.1 0.35 9.0 4.1 2.1 2 0 0 2 2 2 0 Septation ring formation regulator, EzrA V_ATPase_I PF01496.19 gi|257387286|ref|YP_003177059.1| - 0.18 9.7 10.7 0.17 9.8 2.4 2.0 2 0 0 2 2 2 0 V-type ATPase 116kDa subunit family DUF4618 PF15397.6 gi|257387286|ref|YP_003177059.1| - 0.19 11.2 17.0 0.84 9.0 4.8 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4618) YlqD PF11068.8 gi|257387286|ref|YP_003177059.1| - 0.21 12.0 27.6 0.92 9.9 5.7 2.2 2 0 0 2 2 2 0 YlqD protein SHE3 PF17078.5 gi|257387286|ref|YP_003177059.1| - 0.23 11.2 15.6 0.79 9.4 6.3 2.1 2 0 0 2 2 2 0 SWI5-dependent HO expression protein 3 AAA_13 PF13166.6 gi|257387286|ref|YP_003177059.1| - 0.23 10.0 18.3 0.42 9.2 3.6 2.0 2 0 0 2 2 2 0 AAA domain CENP-Q PF13094.6 gi|257387286|ref|YP_003177059.1| - 0.25 11.5 14.8 0.26 11.5 5.7 2.3 2 0 0 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit DUF1664 PF07889.12 gi|257387286|ref|YP_003177059.1| - 0.31 11.1 18.6 0.51 10.4 3.2 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF1664) JIP_LZII PF16471.5 gi|257387286|ref|YP_003177059.1| - 0.33 11.2 19.9 2.5 8.4 6.9 2.4 2 0 0 2 2 2 0 JNK-interacting protein leucine zipper II DUF4337 PF14235.6 gi|257387286|ref|YP_003177059.1| - 0.33 11.1 17.8 0.38 10.9 8.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4337) Seryl_tRNA_N PF02403.22 gi|257387286|ref|YP_003177059.1| - 0.35 11.1 17.0 0.64 10.3 4.1 2.4 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain AAA_lid_9 PF17871.1 gi|257387286|ref|YP_003177059.1| - 0.35 10.8 16.3 0.88 9.5 5.8 2.3 2 0 0 2 2 2 0 AAA lid domain CLZ PF16526.5 gi|257387286|ref|YP_003177059.1| - 0.4 11.1 19.0 0.12 12.7 7.3 2.6 2 1 0 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels NPV_P10 PF05531.12 gi|257387286|ref|YP_003177059.1| - 0.4 11.2 19.8 1.9 9.0 6.1 2.6 2 1 0 2 2 2 0 Nucleopolyhedrovirus P10 protein 5_nucleotid PF05761.14 gi|257387286|ref|YP_003177059.1| - 0.42 9.4 12.8 0.67 8.8 12.8 1.3 1 1 0 1 1 1 0 5' nucleotidase family Tho2 PF11262.8 gi|257387286|ref|YP_003177059.1| - 0.47 9.6 10.5 0.34 10.1 1.1 2.0 2 0 0 2 2 2 0 Transcription factor/nuclear export subunit protein 2 Fmp27_WPPW PF10359.9 gi|257387286|ref|YP_003177059.1| - 0.48 9.2 17.2 0.7 8.7 7.2 2.0 2 0 0 2 2 2 0 RNA pol II promoter Fmp27 protein domain BLOC1_2 PF10046.9 gi|257387286|ref|YP_003177059.1| - 0.48 10.8 19.6 1.2 9.4 4.0 2.8 2 1 0 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 SKA2 PF16740.5 gi|257387286|ref|YP_003177059.1| - 0.49 10.2 16.0 0.66 9.8 1.2 2.2 2 0 0 2 2 2 0 Spindle and kinetochore-associated protein 2 VPS38 PF17649.1 gi|257387286|ref|YP_003177059.1| - 0.53 9.1 8.1 1.3 7.9 1.6 2.0 2 0 0 2 2 2 0 Vacuolar protein sorting 38 ATP-synt_E PF05680.12 gi|257387286|ref|YP_003177059.1| - 0.53 10.7 14.4 0.6 10.5 0.9 2.1 2 0 0 2 2 2 0 ATP synthase E chain LMBR1 PF04791.16 gi|257387286|ref|YP_003177059.1| - 0.53 9.1 4.9 0.73 8.7 4.9 1.2 1 0 0 1 1 1 0 LMBR1-like membrane protein TolA_bind_tri PF16331.5 gi|257387286|ref|YP_003177059.1| - 0.59 10.2 28.6 3.4 7.8 15.1 2.9 3 0 0 3 3 2 0 TolA binding protein trimerisation TMF_TATA_bd PF12325.8 gi|257387286|ref|YP_003177059.1| - 0.59 10.4 24.5 2.7 8.3 9.2 2.5 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding DUF16 PF01519.16 gi|257387286|ref|YP_003177059.1| - 0.62 10.6 18.0 0.48 10.9 5.0 2.2 2 0 0 2 2 2 0 Protein of unknown function DUF16 HIP1_clath_bdg PF16515.5 gi|257387286|ref|YP_003177059.1| - 0.71 10.5 21.5 1.8 9.2 3.4 2.3 2 0 0 2 2 2 0 Clathrin-binding domain of Huntingtin-interacting protein 1 MctB PF11382.8 gi|257387286|ref|YP_003177059.1| - 0.72 9.5 10.1 4 7.1 0.6 2.2 2 0 0 2 2 2 0 Copper transport outer membrane protein, MctB WXG100 PF06013.12 gi|257387286|ref|YP_003177059.1| - 0.78 10.0 21.3 4.3 7.6 10.7 2.6 2 1 0 2 2 2 0 Proteins of 100 residues with WXG FapA PF03961.13 gi|257387286|ref|YP_003177059.1| - 0.82 8.2 18.0 2 6.9 5.8 2.0 1 1 0 2 2 2 0 Flagellar Assembly Protein A LPP PF04728.13 gi|257387286|ref|YP_003177059.1| - 0.96 9.9 17.1 2.5 8.5 2.1 3.1 2 1 1 3 3 3 0 Lipoprotein leucine-zipper SAS4 PF15460.6 gi|257387286|ref|YP_003177059.1| - 0.99 9.5 13.2 1.2 9.3 4.3 2.4 2 0 0 2 2 2 0 Something about silencing, SAS, complex subunit 4 zf-C4H2 PF10146.9 gi|257387286|ref|YP_003177059.1| - 1 9.6 15.2 1.3 9.3 2.6 2.1 2 0 0 2 2 2 0 Zinc finger-containing protein T2SSM PF04612.12 gi|257387286|ref|YP_003177059.1| - 1.3 9.1 13.4 1.3 9.1 6.0 2.2 2 0 0 2 2 2 0 Type II secretion system (T2SS), protein M Cob_adeno_trans PF01923.18 gi|257387286|ref|YP_003177059.1| - 1.3 9.1 9.5 0.39 10.9 1.2 2.2 1 1 1 2 2 2 0 Cobalamin adenosyltransferase ABC_tran_CTD PF16326.5 gi|257387286|ref|YP_003177059.1| - 1.4 9.3 40.7 12 6.2 16.4 3.6 2 2 1 3 3 3 0 ABC transporter C-terminal domain DUF3086 PF11285.8 gi|257387286|ref|YP_003177059.1| - 1.5 7.8 12.4 6.8 5.7 12.3 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF3086) Syntaxin-6_N PF09177.11 gi|257387286|ref|YP_003177059.1| - 1.5 9.4 13.3 3.7 8.2 3.6 2.4 2 1 0 2 2 2 0 Syntaxin 6, N-terminal USP8_interact PF08941.10 gi|257387286|ref|YP_003177059.1| - 1.6 8.5 12.8 0.27 11.0 0.7 2.2 2 0 0 2 2 2 0 USP8 interacting BshC PF10079.9 gi|257387286|ref|YP_003177059.1| - 1.6 7.4 11.3 1.3 7.6 3.0 2.0 2 0 0 2 2 2 0 Bacillithiol biosynthesis BshC ThylakoidFormat PF11264.8 gi|257387286|ref|YP_003177059.1| - 1.6 8.4 12.0 0.39 10.4 5.1 2.1 2 0 0 2 2 2 0 Thylakoid formation protein Nmad5 PF18757.1 gi|257387286|ref|YP_003177059.1| - 1.6 8.9 8.2 1 9.5 4.5 2.0 1 1 1 2 2 2 0 Nucleotide modification associated domain 5 DUF2937 PF11157.8 gi|257387286|ref|YP_003177059.1| - 1.7 8.3 10.2 0.83 9.3 4.9 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2937) FH2 PF02181.23 gi|257387286|ref|YP_003177059.1| - 1.8 7.6 11.3 4.2 6.4 3.8 2.1 2 0 0 2 2 2 0 Formin Homology 2 Domain DUF4140 PF13600.6 gi|257387286|ref|YP_003177059.1| - 2 8.9 20.0 3.8 8.0 6.2 2.6 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) AIP3 PF03915.13 gi|257387286|ref|YP_003177059.1| - 2 7.4 16.6 0.2 10.7 5.5 2.0 1 1 0 2 2 2 0 Actin interacting protein 3 DUF948 PF06103.11 gi|257387286|ref|YP_003177059.1| - 2 8.7 11.1 7 7.0 3.4 2.3 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF948) GrpE PF01025.19 gi|257387286|ref|YP_003177059.1| - 2.1 8.0 16.6 3.3 7.4 7.1 2.2 2 0 0 2 2 2 0 GrpE DUF4446 PF14584.6 gi|257387286|ref|YP_003177059.1| - 2.2 8.2 12.4 3.9 7.4 0.8 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4446) MscS_porin PF12795.7 gi|257387286|ref|YP_003177059.1| - 2.3 7.7 34.8 1.1 8.8 9.4 2.1 1 1 1 2 2 2 0 Mechanosensitive ion channel porin domain SlyX PF04102.12 gi|257387286|ref|YP_003177059.1| - 2.4 8.9 30.1 0.31 11.7 14.8 2.7 3 0 0 3 3 2 0 SlyX DUF5320 PF17253.2 gi|257387286|ref|YP_003177059.1| - 2.5 9.2 13.5 0.97 10.5 0.9 2.9 2 1 0 2 2 2 0 Family of unknown function (DUF5320) LCIB_C_CA PF18599.1 gi|257387286|ref|YP_003177059.1| - 2.6 7.3 10.8 0.32 10.3 4.3 2.0 2 0 0 2 2 2 0 Limiting CO2-inducible proteins B/C beta carbonyic anhydrases MRP-L28 PF09812.9 gi|257387286|ref|YP_003177059.1| - 2.7 8.1 12.3 4.7 7.3 1.0 2.2 2 0 0 2 2 2 0 Mitochondrial ribosomal protein L28 Med4 PF10018.9 gi|257387286|ref|YP_003177059.1| - 2.7 7.6 21.9 1.5 8.5 6.8 2.6 3 0 0 3 3 2 0 Vitamin-D-receptor interacting Mediator subunit 4 Synaptobrevin PF00957.21 gi|257387286|ref|YP_003177059.1| - 2.8 7.8 14.9 0.39 10.5 3.4 2.4 2 0 0 2 2 2 0 Synaptobrevin DUF4407 PF14362.6 gi|257387286|ref|YP_003177059.1| - 2.9 7.2 17.9 7.9 5.7 17.9 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) PRKG1_interact PF15898.5 gi|257387286|ref|YP_003177059.1| - 2.9 8.9 16.1 6.5 7.7 1.5 2.3 2 0 0 2 2 2 0 cGMP-dependent protein kinase interacting domain Cluap1 PF10234.9 gi|257387286|ref|YP_003177059.1| - 3 7.2 18.6 2.3 7.6 4.0 2.1 2 0 0 2 2 2 0 Clusterin-associated protein-1 SKA1 PF07160.12 gi|257387286|ref|YP_003177059.1| - 3.1 7.6 15.9 4.8 7.0 2.1 2.1 2 0 0 2 2 2 0 Spindle and kinetochore-associated protein 1 AAA_23 PF13476.6 gi|257387286|ref|YP_003177059.1| - 3.2 8.2 21.5 1 9.8 3.7 2.1 2 0 0 2 2 2 0 AAA domain Cauli_DNA-bind PF03310.13 gi|257387286|ref|YP_003177059.1| - 3.2 7.8 11.6 1 9.5 3.5 2.3 2 0 0 2 2 2 0 Caulimovirus DNA-binding protein Occludin_ELL PF07303.13 gi|257387286|ref|YP_003177059.1| - 3.2 8.5 13.4 7.8 7.3 4.3 2.2 2 0 0 2 2 2 0 Occludin homology domain ISG65-75 PF11727.8 gi|257387286|ref|YP_003177059.1| - 3.4 6.8 10.7 3.8 6.7 0.8 2.1 2 0 0 2 2 2 0 Invariant surface glycoprotein Atg14 PF10186.9 gi|257387286|ref|YP_003177059.1| - 3.6 6.6 13.7 3.7 6.5 4.1 2.0 2 0 0 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 RRP36 PF06102.12 gi|257387286|ref|YP_003177059.1| - 3.7 7.5 13.1 0.77 9.7 3.0 2.1 2 0 0 2 2 2 0 rRNA biogenesis protein RRP36 Nitro_FeMo-Co PF02579.17 gi|257387286|ref|YP_003177059.1| - 5 7.5 7.5 1.3 9.4 0.2 2.9 2 1 2 4 4 3 0 Dinitrogenase iron-molybdenum cofactor Rx_N PF18052.1 gi|257387286|ref|YP_003177059.1| - 5.4 7.4 12.8 8.5 6.7 1.0 2.4 2 0 0 2 2 2 0 Rx N-terminal domain CorA PF01544.18 gi|257387286|ref|YP_003177059.1| - 5.4 6.2 19.8 92 2.2 19.8 2.0 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein DUF3584 PF12128.8 gi|257387286|ref|YP_003177059.1| - 6.5 4.1 21.6 0.77 7.2 4.6 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3584) Fzo_mitofusin PF04799.13 gi|257387286|ref|YP_003177059.1| - 6.7 6.2 14.1 6.6 6.3 2.6 2.4 2 0 0 2 2 2 0 fzo-like conserved region TraF_2 PF13729.6 gi|257387286|ref|YP_003177059.1| - 7.4 5.8 14.0 4.2 6.7 5.4 2.2 1 1 1 2 2 2 0 F plasmid transfer operon, TraF, protein TMPIT PF07851.13 gi|257387286|ref|YP_003177059.1| - 7.7 5.7 18.9 2.5 7.3 2.6 2.0 1 1 1 2 2 2 0 TMPIT-like protein Swi5 PF07061.11 gi|257387286|ref|YP_003177059.1| - 8.2 6.6 18.7 2.8 8.1 3.4 2.8 2 1 1 3 3 3 0 Swi5 PAF-AH_p_II PF03403.13 gi|257387286|ref|YP_003177059.1| - 8.4 4.8 8.4 0.21 10.1 1.0 1.8 1 1 1 2 2 2 0 Platelet-activating factor acetylhydrolase, isoform II DLP_helical PF18709.1 gi|257387286|ref|YP_003177059.1| - 8.8 5.4 16.6 6.1 5.9 4.9 2.1 2 0 0 2 2 2 0 Dynamin-like helical domain L31 PF09784.9 gi|257387286|ref|YP_003177059.1| - 9.8 6.7 8.3 34 4.9 2.8 2.9 2 1 0 2 2 2 0 Mitochondrial ribosomal protein L31 FemAB PF02388.16 gi|257387286|ref|YP_003177059.1| - 9.9 4.9 11.0 14 4.5 5.3 2.0 2 0 0 2 2 2 0 FemAB family Ribosomal_L18A PF01775.17 gi|257387287|ref|YP_003177060.1| - 2.1e-09 37.5 0.0 2.2e-09 37.4 0.0 1.0 1 0 0 1 1 1 1 Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A eIF-6 PF01912.18 gi|257387288|ref|YP_003177061.1| - 3.6e-72 241.9 0.0 4.1e-72 241.7 0.0 1.0 1 0 0 1 1 1 1 eIF-6 family Ribosomal_L31e PF01198.19 gi|257387289|ref|YP_003177062.1| - 1.8e-09 37.7 0.2 2e-09 37.6 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L31e Rap1a PF18602.1 gi|257387289|ref|YP_003177062.1| - 0.073 13.4 0.1 13 6.1 0.0 2.1 2 0 0 2 2 2 0 Rap1a immunity proteins Ribosomal_L39 PF00832.20 gi|257387290|ref|YP_003177063.1| - 3.4e-18 65.0 9.1 4.3e-18 64.6 9.1 1.1 1 0 0 1 1 1 1 Ribosomal L39 protein Sel_put PF04328.13 gi|257387291|ref|YP_003177064.1| - 0.004 17.2 0.4 0.0071 16.4 0.4 1.4 1 0 0 1 1 1 1 Selenoprotein, putative TAT_signal PF10518.9 gi|257387291|ref|YP_003177064.1| - 0.041 13.7 3.0 0.072 13.0 3.0 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Zip PF02535.22 gi|257387292|ref|YP_003177065.1| - 2.1e-13 50.2 18.6 6.3e-13 48.6 5.6 3.0 2 1 0 2 2 2 2 ZIP Zinc transporter TOBE_3 PF12857.7 gi|257387293|ref|YP_003177066.1| - 0.05 13.5 0.0 0.079 12.9 0.0 1.4 1 0 0 1 1 1 0 TOBE-like domain LigT_PEase PF02834.16 gi|257387294|ref|YP_003177067.1| - 4.3e-23 81.3 0.1 3.7e-12 46.3 0.0 2.1 2 0 0 2 2 2 2 LigT like Phosphoesterase 2_5_RNA_ligase2 PF13563.6 gi|257387294|ref|YP_003177067.1| - 3e-18 66.2 0.4 3.3e-18 66.0 0.4 1.1 1 0 0 1 1 1 1 2'-5' RNA ligase superfamily AKAP7_NLS PF10469.9 gi|257387294|ref|YP_003177067.1| - 6.7e-10 39.2 0.0 8.3e-10 38.9 0.0 1.1 1 0 0 1 1 1 1 AKAP7 2'5' RNA ligase-like domain HVSL PF09749.9 gi|257387294|ref|YP_003177067.1| - 3.6e-06 26.6 0.0 3.8e-06 26.6 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised conserved protein PhoR PF11808.8 gi|257387295|ref|YP_003177068.1| - 1.6 9.2 3.5 3.1 8.3 3.5 1.5 1 1 0 1 1 1 0 Phosphate regulon sensor protein PhoR DUF3040 PF11239.8 gi|257387295|ref|YP_003177068.1| - 2.1 8.7 6.2 2.7 8.3 6.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3040) TPR_1 PF00515.28 gi|257387296|ref|YP_003177069.1| - 3.5e-22 77.3 7.1 1.4e-05 24.7 0.0 5.2 5 0 0 5 5 5 4 Tetratricopeptide repeat TPR_2 PF07719.17 gi|257387296|ref|YP_003177069.1| - 1.8e-19 68.2 17.1 3.4e-05 23.6 0.1 5.2 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_8 PF13181.6 gi|257387296|ref|YP_003177069.1| - 1.1e-15 56.5 3.5 0.0008 19.4 0.0 5.2 5 0 0 5 5 5 5 Tetratricopeptide repeat TPR_16 PF13432.6 gi|257387296|ref|YP_003177069.1| - 2.2e-14 53.8 21.8 1.2e-09 38.6 4.0 3.6 2 2 1 4 4 4 4 Tetratricopeptide repeat TPR_12 PF13424.6 gi|257387296|ref|YP_003177069.1| - 2.4e-13 50.2 19.3 0.00023 21.4 0.9 4.8 3 1 1 4 4 4 4 Tetratricopeptide repeat TPR_11 PF13414.6 gi|257387296|ref|YP_003177069.1| - 6.7e-13 48.1 2.1 8.4e-07 28.6 0.0 5.0 3 1 2 5 5 5 2 TPR repeat TPR_7 PF13176.6 gi|257387296|ref|YP_003177069.1| - 7.1e-10 38.2 12.5 0.032 14.2 0.1 4.5 4 0 0 4 4 4 3 Tetratricopeptide repeat TPR_14 PF13428.6 gi|257387296|ref|YP_003177069.1| - 8.7e-10 38.6 24.4 5.2e-06 26.8 0.6 5.2 2 2 3 5 5 5 4 Tetratricopeptide repeat TPR_17 PF13431.6 gi|257387296|ref|YP_003177069.1| - 3.3e-09 36.5 0.3 2.8e-05 24.2 0.0 4.3 4 0 0 4 4 4 1 Tetratricopeptide repeat TPR_9 PF13371.6 gi|257387296|ref|YP_003177069.1| - 1.1e-08 35.0 12.4 4.6e-05 23.5 1.5 3.9 2 2 2 4 4 4 3 Tetratricopeptide repeat TPR_19 PF14559.6 gi|257387296|ref|YP_003177069.1| - 1.7e-06 28.5 12.3 8.3e-05 23.0 0.1 4.0 1 1 4 5 5 5 3 Tetratricopeptide repeat TPR_6 PF13174.6 gi|257387296|ref|YP_003177069.1| - 1.8e-06 28.2 6.5 2.4 9.0 0.0 5.0 5 0 0 5 5 5 2 Tetratricopeptide repeat TPR_10 PF13374.6 gi|257387296|ref|YP_003177069.1| - 0.00086 19.1 25.3 0.0012 18.7 0.5 4.6 5 1 0 5 5 5 2 Tetratricopeptide repeat ANAPC3 PF12895.7 gi|257387296|ref|YP_003177069.1| - 0.00091 19.4 3.5 0.02 15.1 0.4 2.5 2 0 0 2 2 2 1 Anaphase-promoting complex, cyclosome, subunit 3 TPR_4 PF07721.14 gi|257387296|ref|YP_003177069.1| - 0.0013 19.1 1.4 0.0013 19.1 1.4 4.4 5 0 0 5 5 3 1 Tetratricopeptide repeat TPR_20 PF14561.6 gi|257387296|ref|YP_003177069.1| - 1 9.7 7.7 3.6 8.0 0.2 3.0 2 2 0 2 2 2 0 Tetratricopeptide repeat ATP-synt_E PF05680.12 gi|257387296|ref|YP_003177069.1| - 6.7 7.1 7.4 1.6 9.1 1.9 2.4 2 0 0 2 2 2 0 ATP synthase E chain SMBP PF16785.5 gi|257387296|ref|YP_003177069.1| - 7.8 6.8 12.4 2.5 8.3 0.4 3.3 3 0 0 3 3 3 0 Small metal-binding protein DUF424 PF04242.13 gi|257387297|ref|YP_003177070.1| - 3.9e-32 110.4 0.0 4.3e-32 110.2 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF424) Aminotran_5 PF00266.19 gi|257387298|ref|YP_003177071.1| - 2.6e-148 493.9 0.1 2.9e-148 493.8 0.1 1.0 1 0 0 1 1 1 1 Aminotransferase class-V DegT_DnrJ_EryC1 PF01041.17 gi|257387298|ref|YP_003177071.1| - 3.5e-13 49.6 1.7 6.8e-13 48.7 1.7 1.6 1 1 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|257387298|ref|YP_003177071.1| - 7.9e-08 31.9 0.2 1.2e-07 31.4 0.2 1.4 1 1 0 1 1 1 1 Beta-eliminating lyase Pyridoxal_deC PF00282.19 gi|257387298|ref|YP_003177071.1| - 1.7e-06 27.0 0.0 5.4e-05 22.1 0.2 2.1 2 0 0 2 2 2 1 Pyridoxal-dependent decarboxylase conserved domain Cys_Met_Meta_PP PF01053.20 gi|257387298|ref|YP_003177071.1| - 1.3e-05 24.0 0.1 2e-05 23.3 0.1 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme SelA PF03841.13 gi|257387298|ref|YP_003177071.1| - 0.0018 17.3 0.1 0.0054 15.8 0.1 1.6 1 1 0 1 1 1 1 L-seryl-tRNA selenium transferase BRCT_3 PF18428.1 gi|257387298|ref|YP_003177071.1| - 0.18 11.9 0.2 0.44 10.6 0.2 1.6 1 0 0 1 1 1 0 BRCA1 C Terminus (BRCT) domain Reprolysin_4 PF13583.6 gi|257387299|ref|YP_003177072.1| - 0.00061 19.5 0.0 0.0011 18.7 0.0 1.3 1 0 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Reprolysin_3 PF13582.6 gi|257387299|ref|YP_003177072.1| - 0.0048 17.4 0.0 0.012 16.1 0.0 1.7 1 1 0 1 1 1 1 Metallo-peptidase family M12B Reprolysin-like Peptidase_M66 PF10462.9 gi|257387299|ref|YP_003177072.1| - 0.013 14.5 0.1 0.018 14.0 0.1 1.2 1 0 0 1 1 1 0 Peptidase M66 Metallopep PF12044.8 gi|257387299|ref|YP_003177072.1| - 0.028 13.1 0.0 0.047 12.3 0.0 1.3 1 0 0 1 1 1 0 Putative peptidase family Peptidase_M64 PF09471.10 gi|257387299|ref|YP_003177072.1| - 0.04 13.4 0.0 0.056 13.0 0.0 1.2 1 0 0 1 1 1 0 IgA Peptidase M64 DUF3313 PF11769.8 gi|257387299|ref|YP_003177072.1| - 0.098 12.5 1.7 0.19 11.5 1.7 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3313) Reprolysin_5 PF13688.6 gi|257387299|ref|YP_003177072.1| - 0.18 12.0 0.0 0.28 11.3 0.0 1.3 1 0 0 1 1 1 0 Metallo-peptidase family M12 DUF502 PF04367.13 gi|257387300|ref|YP_003177073.1| - 4.3e-27 94.1 1.3 1.7e-26 92.2 0.1 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF502) BCD PF15461.6 gi|257387300|ref|YP_003177073.1| - 0.1 12.1 2.4 0.13 11.7 2.4 1.2 1 0 0 1 1 1 0 Beta-carotene 15,15'-dioxygenase TatC PF00902.18 gi|257387301|ref|YP_003177074.1| - 0.0002 21.3 2.2 0.0002 21.3 2.2 1.4 1 1 0 1 1 1 1 Sec-independent protein translocase protein (TatC) DUF1990 PF09348.10 gi|257387301|ref|YP_003177074.1| - 0.02 14.9 0.3 0.051 13.6 0.3 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF1990) Herpes_UL20 PF04544.12 gi|257387301|ref|YP_003177074.1| - 0.13 12.7 0.1 0.22 11.9 0.1 1.3 1 0 0 1 1 1 0 Herpesvirus egress protein UL20 Deltameth_res PF16020.5 gi|257387301|ref|YP_003177074.1| - 0.94 9.4 0.0 0.94 9.4 0.0 3.1 4 0 0 4 4 4 0 Deltamethrin resistance Rep_fac_C PF08542.11 gi|257387303|ref|YP_003177076.1| - 2.3e-12 47.1 0.0 4.9e-12 46.1 0.0 1.6 1 0 0 1 1 1 1 Replication factor C C-terminal domain DNA_pol3_delta2 PF13177.6 gi|257387303|ref|YP_003177076.1| - 5.6e-12 45.7 0.0 1e-11 44.9 0.0 1.4 1 0 0 1 1 1 1 DNA polymerase III, delta subunit AAA PF00004.29 gi|257387303|ref|YP_003177076.1| - 4.9e-10 39.9 0.0 2e-09 38.0 0.0 2.0 2 1 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|257387303|ref|YP_003177076.1| - 8.4e-07 29.3 0.0 1.7e-06 28.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|257387303|ref|YP_003177076.1| - 1.1e-05 25.9 0.3 0.00023 21.6 0.0 2.5 2 1 0 2 2 2 1 AAA ATPase domain Sigma54_activat PF00158.26 gi|257387303|ref|YP_003177076.1| - 5.2e-05 23.0 0.0 0.0026 17.5 0.0 2.8 3 0 0 3 3 3 1 Sigma-54 interaction domain AAA_18 PF13238.6 gi|257387303|ref|YP_003177076.1| - 0.0002 21.9 0.0 0.0014 19.2 0.0 2.3 2 1 0 2 2 2 1 AAA domain AAA_14 PF13173.6 gi|257387303|ref|YP_003177076.1| - 0.0028 17.7 0.0 0.01 15.8 0.0 1.8 1 1 0 1 1 1 1 AAA domain T2SSE PF00437.20 gi|257387303|ref|YP_003177076.1| - 0.0082 15.2 0.0 0.019 14.1 0.0 1.6 1 0 0 1 1 1 1 Type II/IV secretion system protein DUF815 PF05673.13 gi|257387303|ref|YP_003177076.1| - 0.01 15.0 0.0 0.017 14.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) AAA_11 PF13086.6 gi|257387303|ref|YP_003177076.1| - 0.015 15.1 0.0 0.051 13.3 0.0 1.7 1 1 1 2 2 2 0 AAA domain Bac_DnaA PF00308.18 gi|257387303|ref|YP_003177076.1| - 0.015 15.1 0.0 2.3 8.0 0.0 2.5 2 0 0 2 2 2 0 Bacterial dnaA protein TsaE PF02367.17 gi|257387303|ref|YP_003177076.1| - 0.017 15.1 0.0 0.039 14.0 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Zeta_toxin PF06414.12 gi|257387303|ref|YP_003177076.1| - 0.03 13.6 0.0 0.078 12.2 0.0 1.8 1 1 0 1 1 1 0 Zeta toxin ATPase_2 PF01637.18 gi|257387303|ref|YP_003177076.1| - 0.051 13.5 0.0 0.082 12.8 0.0 1.4 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea Mg_chelatase PF01078.21 gi|257387303|ref|YP_003177076.1| - 0.059 12.7 0.0 0.11 11.9 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_assoc_2 PF16193.5 gi|257387303|ref|YP_003177076.1| - 0.071 13.4 0.6 0.25 11.7 0.6 2.0 1 1 0 1 1 1 0 AAA C-terminal domain AAA_33 PF13671.6 gi|257387303|ref|YP_003177076.1| - 0.074 13.2 0.0 0.14 12.4 0.0 1.5 1 0 0 1 1 1 0 AAA domain TniB PF05621.11 gi|257387303|ref|YP_003177076.1| - 0.11 11.9 0.0 0.39 10.1 0.0 1.9 2 0 0 2 2 2 0 Bacterial TniB protein DEAD PF00270.29 gi|257387303|ref|YP_003177076.1| - 0.16 11.7 0.0 20 4.9 0.0 2.4 2 0 0 2 2 2 0 DEAD/DEAH box helicase DUF2892 PF11127.8 gi|257387304|ref|YP_003177077.1| - 0.45 10.6 4.1 1.2 9.3 4.1 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF2892) BmKX PF09132.10 gi|257387305|ref|YP_003177078.1| - 0.062 13.3 0.3 0.12 12.4 0.3 1.4 1 0 0 1 1 1 0 BmKX Chlor_dismutase PF06778.12 gi|257387306|ref|YP_003177079.1| - 5.6e-66 221.8 0.2 1.3e-65 220.7 0.2 1.6 1 0 0 1 1 1 1 Chlorite dismutase ABM PF03992.16 gi|257387306|ref|YP_003177079.1| - 3e-10 40.1 0.7 3e-10 40.1 0.7 3.2 4 0 0 4 4 4 1 Antibiotic biosynthesis monooxygenase NifU_N PF01592.16 gi|257387308|ref|YP_003177081.1| - 2e-26 92.6 0.1 2.3e-26 92.4 0.1 1.0 1 0 0 1 1 1 1 NifU-like N terminal domain bPH_3 PF14470.6 gi|257387309|ref|YP_003177082.1| - 6.9e-05 23.1 0.0 0.00011 22.5 0.0 1.4 1 0 0 1 1 1 1 Bacterial PH domain DUF2150 PF09920.9 gi|257387309|ref|YP_003177082.1| - 0.004 17.1 0.4 0.011 15.7 0.3 1.8 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2150) Glutaredoxin2_C PF04399.13 gi|257387309|ref|YP_003177082.1| - 0.015 15.2 0.1 0.86 9.4 0.0 2.5 1 1 1 2 2 2 0 Glutaredoxin 2, C terminal domain BTAD PF03704.17 gi|257387309|ref|YP_003177082.1| - 0.041 14.3 12.7 0.052 14.0 6.8 2.7 2 1 0 2 2 2 0 Bacterial transcriptional activator domain MscS_porin PF12795.7 gi|257387309|ref|YP_003177082.1| - 0.19 11.2 4.2 2.4 7.7 0.1 2.5 3 0 0 3 3 3 0 Mechanosensitive ion channel porin domain TPR_2 PF07719.17 gi|257387309|ref|YP_003177082.1| - 0.7 10.2 2.7 14 6.1 0.1 3.4 3 0 0 3 3 3 0 Tetratricopeptide repeat DUF2564 PF10819.8 gi|257387309|ref|YP_003177082.1| - 1.2 9.5 6.1 24 5.4 0.2 3.8 3 1 0 3 3 3 0 Protein of unknown function (DUF2564) SMBP PF16785.5 gi|257387309|ref|YP_003177082.1| - 5.5 7.3 8.3 2 8.7 0.2 2.9 3 0 0 3 3 3 0 Small metal-binding protein WXG100 PF06013.12 gi|257387309|ref|YP_003177082.1| - 5.9 7.2 8.4 26 5.1 2.5 3.5 2 1 1 3 3 3 0 Proteins of 100 residues with WXG DDE_Tnp_IS1595 PF12762.7 gi|257387310|ref|YP_003177083.1| - 1.8e-19 70.2 0.0 2.8e-19 69.6 0.0 1.2 1 0 0 1 1 1 1 ISXO2-like transposase domain Zn_Tnp_IS1595 PF12760.7 gi|257387310|ref|YP_003177083.1| - 3.6e-10 39.7 0.9 7.2e-10 38.7 0.9 1.6 1 0 0 1 1 1 1 Transposase zinc-ribbon domain DUF2089 PF09862.9 gi|257387310|ref|YP_003177083.1| - 5.1e-07 29.7 0.0 8.9e-07 28.9 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2089) Zn_Tnp_IS1 PF03811.13 gi|257387310|ref|YP_003177083.1| - 1.3e-05 24.8 4.0 3.5e-05 23.4 4.0 1.7 1 0 0 1 1 1 1 InsA N-terminal domain TackOD1 PF18551.1 gi|257387310|ref|YP_003177083.1| - 0.0063 16.2 0.2 0.01 15.5 0.2 1.2 1 0 0 1 1 1 1 Thaumarchaeal output domain 1 Zn-ribbon_8 PF09723.10 gi|257387310|ref|YP_003177083.1| - 0.015 15.4 0.5 2.9 8.1 0.1 2.5 2 0 0 2 2 2 0 Zinc ribbon domain HTH_23 PF13384.6 gi|257387310|ref|YP_003177083.1| - 0.022 14.6 0.0 0.075 12.9 0.0 1.9 1 0 0 1 1 1 0 Homeodomain-like domain HTH_29 PF13551.6 gi|257387310|ref|YP_003177083.1| - 0.026 14.5 0.1 0.086 12.9 0.1 1.9 1 0 0 1 1 1 0 Winged helix-turn helix ADK_lid PF05191.14 gi|257387310|ref|YP_003177083.1| - 0.035 14.1 2.6 0.036 14.0 0.1 2.1 2 0 0 2 2 2 0 Adenylate kinase, active site lid GerE PF00196.19 gi|257387310|ref|YP_003177083.1| - 0.037 13.6 0.0 0.077 12.5 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family zf-C4_Topoisom PF01396.19 gi|257387310|ref|YP_003177083.1| - 0.043 13.6 1.3 0.086 12.6 1.3 1.5 1 0 0 1 1 1 0 Topoisomerase DNA binding C4 zinc finger HTH_11 PF08279.12 gi|257387310|ref|YP_003177083.1| - 0.095 12.7 0.0 0.18 11.8 0.0 1.4 1 0 0 1 1 1 0 HTH domain zinc-ribbons_6 PF07191.12 gi|257387310|ref|YP_003177083.1| - 0.1 12.6 0.3 0.18 11.8 0.3 1.4 1 0 0 1 1 1 0 zinc-ribbons Lar_restr_allev PF14354.6 gi|257387310|ref|YP_003177083.1| - 0.11 12.9 0.1 0.24 11.8 0.1 1.5 1 0 0 1 1 1 0 Restriction alleviation protein Lar Sigma70_r4_2 PF08281.12 gi|257387310|ref|YP_003177083.1| - 0.11 12.2 0.0 0.28 10.9 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 zf-C2H2_4 PF13894.6 gi|257387310|ref|YP_003177083.1| - 0.44 11.5 3.6 0.99 10.4 0.2 3.0 3 0 0 3 3 3 0 C2H2-type zinc finger zf-Dof PF02701.15 gi|257387310|ref|YP_003177083.1| - 0.56 10.4 5.3 1.2 9.3 5.3 1.5 1 1 0 1 1 1 0 Dof domain, zinc finger zf-ISL3 PF14690.6 gi|257387310|ref|YP_003177083.1| - 0.67 10.7 5.8 7 7.4 0.2 3.0 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn_ribbon_recom PF13408.6 gi|257387310|ref|YP_003177083.1| - 2.1 8.9 6.6 3.3 8.3 5.2 1.9 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain zf-C2HC_2 PF13913.6 gi|257387310|ref|YP_003177083.1| - 4.3 7.4 8.0 0.21 11.5 1.4 2.2 2 0 0 2 2 2 0 zinc-finger of a C2HC-type Sec20 PF03908.13 gi|257387311|ref|YP_003177084.1| - 0.25 11.3 2.3 0.93 9.5 0.1 2.0 1 1 1 2 2 2 0 Sec20 MgtE PF01769.16 gi|257387312|ref|YP_003177085.1| - 5e-20 72.1 6.7 5e-20 72.1 6.7 1.9 1 1 1 2 2 2 1 Divalent cation transporter DUF2632 PF10943.8 gi|257387312|ref|YP_003177085.1| - 0.07 12.7 2.6 0.093 12.3 2.6 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2632) SecD_SecF PF02355.16 gi|257387312|ref|YP_003177085.1| - 8.1 5.8 12.2 0.094 12.1 2.9 2.2 3 0 0 3 3 3 0 Protein export membrane protein MgtE PF01769.16 gi|257387313|ref|YP_003177086.1| - 9.4e-22 77.7 11.9 9.4e-22 77.7 11.9 1.6 2 0 0 2 2 2 1 Divalent cation transporter DUF4006 PF13179.6 gi|257387313|ref|YP_003177086.1| - 3.8 7.5 6.1 0.85 9.6 2.2 2.0 2 0 0 2 2 2 0 Family of unknown function (DUF4006) Gate PF07670.14 gi|257387314|ref|YP_003177087.1| - 0.0096 16.2 10.8 0.35 11.1 2.8 2.8 1 1 1 2 2 2 2 Nucleoside recognition DUF2530 PF10745.9 gi|257387315|ref|YP_003177088.1| - 0.94 9.8 7.4 0.18 12.1 1.9 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF2530) LTD PF00932.19 gi|257387316|ref|YP_003177089.1| - 3.4e-19 69.3 0.7 5.1e-19 68.7 0.2 1.6 2 0 0 2 2 2 1 Lamin Tail Domain SNase PF00565.17 gi|257387316|ref|YP_003177089.1| - 1.9e-16 60.5 0.0 2.6e-16 60.0 0.0 1.2 1 0 0 1 1 1 1 Staphylococcal nuclease homologue CbiG_mid PF11761.8 gi|257387316|ref|YP_003177089.1| - 0.048 13.8 0.0 0.83 9.8 0.0 2.2 2 0 0 2 2 2 0 Cobalamin biosynthesis central region PUA_3 PF17785.1 gi|257387316|ref|YP_003177089.1| - 0.056 13.3 1.6 2.1 8.2 0.1 3.5 3 2 0 3 3 3 0 PUA-like domain LPAM_1 PF08139.12 gi|257387316|ref|YP_003177089.1| - 0.1 13.1 3.0 0.18 12.3 3.0 1.4 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site Oxidored_molyb PF00174.19 gi|257387317|ref|YP_003177090.1| - 2.2e-26 92.5 0.0 3.6e-26 91.8 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain Ni_hydr_CYTB PF01292.20 gi|257387317|ref|YP_003177090.1| - 0.0055 16.3 11.1 0.0085 15.7 1.9 2.3 1 1 1 2 2 2 2 Prokaryotic cytochrome b561 AzlD PF05437.12 gi|257387317|ref|YP_003177090.1| - 0.059 13.6 8.7 0.086 13.0 2.1 3.0 2 1 1 3 3 3 0 Branched-chain amino acid transport protein (AzlD) HAD_2 PF13419.6 gi|257387318|ref|YP_003177091.1| - 5.7e-14 52.6 0.0 8.1e-14 52.1 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|257387318|ref|YP_003177091.1| - 1.6e-10 41.6 2.4 2.3e-10 41.1 2.4 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|257387318|ref|YP_003177091.1| - 9e-08 32.7 2.2 1.1e-07 32.4 2.2 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|257387318|ref|YP_003177091.1| - 1.3e-05 25.2 0.1 3.7e-05 23.7 0.1 1.8 1 0 0 1 1 1 1 HAD-hyrolase-like WcbI PF18588.1 gi|257387318|ref|YP_003177091.1| - 0.14 11.8 0.1 0.39 10.3 0.1 1.7 1 1 1 2 2 2 0 Polysaccharide biosynthesis enzyme WcbI RNA_binding PF01877.17 gi|257387319|ref|YP_003177092.1| - 5.3e-12 46.1 0.1 4.5e-11 43.0 0.1 2.1 1 1 0 1 1 1 1 RNA binding DUF3320 PF11784.8 gi|257387319|ref|YP_003177092.1| - 0.021 14.7 0.2 0.049 13.6 0.2 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF3320) P22_CoatProtein PF11651.8 gi|257387319|ref|YP_003177092.1| - 0.09 11.4 0.0 0.11 11.0 0.0 1.1 1 0 0 1 1 1 0 P22 coat protein - gene protein 5 AAA_17 PF13207.6 gi|257387320|ref|YP_003177093.1| - 7.9e-18 65.2 0.0 1.1e-17 64.7 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|257387320|ref|YP_003177093.1| - 2e-08 34.8 0.0 3e-08 34.3 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|257387320|ref|YP_003177093.1| - 2.9e-06 27.5 0.0 5.1e-06 26.7 0.0 1.4 1 1 0 1 1 1 1 AAA domain ADK PF00406.22 gi|257387320|ref|YP_003177093.1| - 3.6e-05 23.9 0.0 4.7e-05 23.5 0.0 1.2 1 0 0 1 1 1 1 Adenylate kinase YccF PF03733.13 gi|257387322|ref|YP_003177095.1| - 1.5e-11 44.8 23.5 9.2e-06 26.3 7.9 2.1 2 0 0 2 2 2 2 Inner membrane component domain polyprenyl_synt PF00348.17 gi|257387323|ref|YP_003177096.1| - 3.4e-54 183.6 0.0 4e-54 183.4 0.0 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase DUF4075 PF13294.6 gi|257387323|ref|YP_003177096.1| - 0.098 12.8 0.0 0.3 11.2 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF4075) DinB_2 PF12867.7 gi|257387323|ref|YP_003177096.1| - 0.1 13.1 3.7 8.4 6.9 1.4 2.4 2 1 0 2 2 2 0 DinB superfamily EF-G-binding_N PF07299.11 gi|257387323|ref|YP_003177096.1| - 0.12 12.9 0.0 0.31 11.6 0.0 1.7 1 0 0 1 1 1 0 Elongation factor G-binding protein, N-terminal ETF_alpha PF00766.19 gi|257387324|ref|YP_003177097.1| - 2.3e-36 123.7 0.1 6.4e-36 122.3 0.1 1.8 1 0 0 1 1 1 1 Electron transfer flavoprotein FAD-binding domain ETF PF01012.21 gi|257387324|ref|YP_003177097.1| - 3.1e-28 98.9 3.4 3.1e-28 98.9 3.4 1.8 2 0 0 2 2 2 1 Electron transfer flavoprotein domain Glyco_trans_4_4 PF13579.6 gi|257387324|ref|YP_003177097.1| - 0.034 14.6 1.0 0.062 13.7 1.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase 4-like domain DOMON PF03351.17 gi|257387324|ref|YP_003177097.1| - 0.096 12.9 0.0 0.18 12.0 0.0 1.4 1 0 0 1 1 1 0 DOMON domain ETF PF01012.21 gi|257387325|ref|YP_003177098.1| - 7.1e-41 140.1 5.8 9.5e-41 139.7 5.8 1.2 1 0 0 1 1 1 1 Electron transfer flavoprotein domain DUF1350 PF07082.11 gi|257387325|ref|YP_003177098.1| - 0.058 12.7 0.0 0.077 12.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1350) CoA_binding_2 PF13380.6 gi|257387325|ref|YP_003177098.1| - 0.14 12.7 0.2 0.36 11.3 0.1 1.9 2 0 0 2 2 2 0 CoA binding domain HTH_IclR PF09339.10 gi|257387326|ref|YP_003177099.1| - 0.00052 19.7 0.1 0.0029 17.4 0.0 2.1 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|257387326|ref|YP_003177099.1| - 0.0012 18.4 0.1 0.0045 16.5 0.1 2.0 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding CHRD PF07452.12 gi|257387326|ref|YP_003177099.1| - 0.029 15.3 0.6 0.068 14.1 0.6 1.6 1 0 0 1 1 1 0 CHRD domain MarR_2 PF12802.7 gi|257387326|ref|YP_003177099.1| - 0.053 13.4 0.0 0.14 12.1 0.0 1.6 1 0 0 1 1 1 0 MarR family Pilin_N PF07790.11 gi|257387328|ref|YP_003177101.1| - 2.2e-14 54.1 0.6 4.9e-14 53.0 0.6 1.5 2 0 0 2 2 2 1 Archaeal Type IV pilin, N-terminal Methyltransf_11 PF08241.12 gi|257387329|ref|YP_003177102.1| - 1.1e-25 90.1 0.0 1.8e-25 89.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|257387329|ref|YP_003177102.1| - 9.9e-24 83.9 0.0 1.7e-23 83.1 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|257387329|ref|YP_003177102.1| - 2.4e-20 72.9 0.0 3.1e-20 72.5 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|257387329|ref|YP_003177102.1| - 1.3e-16 60.7 0.0 2.3e-13 50.1 0.0 2.1 1 1 1 2 2 2 2 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|257387329|ref|YP_003177102.1| - 3e-16 60.0 0.0 4.5e-16 59.4 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|257387329|ref|YP_003177102.1| - 1.9e-15 57.1 0.0 2.7e-15 56.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|257387329|ref|YP_003177102.1| - 2.2e-07 30.2 0.0 2.8e-07 29.9 0.0 1.2 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase MetW PF07021.12 gi|257387329|ref|YP_003177102.1| - 3.4e-07 30.0 0.0 4.9e-07 29.5 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW CMAS PF02353.20 gi|257387329|ref|YP_003177102.1| - 2.1e-05 24.0 0.0 3.3e-05 23.3 0.0 1.3 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_9 PF08003.11 gi|257387329|ref|YP_003177102.1| - 0.00032 19.7 0.0 0.00046 19.2 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) Methyltransf_2 PF00891.18 gi|257387329|ref|YP_003177102.1| - 0.0005 19.4 0.0 0.00081 18.7 0.0 1.3 1 1 0 1 1 1 1 O-methyltransferase domain PCMT PF01135.19 gi|257387329|ref|YP_003177102.1| - 0.0008 19.2 0.0 0.001 18.8 0.0 1.3 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_8 PF05148.15 gi|257387329|ref|YP_003177102.1| - 0.0046 16.8 0.0 0.028 14.2 0.0 1.9 1 1 0 1 1 1 1 Hypothetical methyltransferase MTS PF05175.14 gi|257387329|ref|YP_003177102.1| - 0.0049 16.4 0.0 0.0078 15.8 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_24 PF13578.6 gi|257387329|ref|YP_003177102.1| - 0.005 17.8 0.0 0.013 16.5 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_32 PF13679.6 gi|257387329|ref|YP_003177102.1| - 0.013 15.5 0.0 0.019 14.9 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_29 PF03141.16 gi|257387329|ref|YP_003177102.1| - 0.03 12.9 0.0 0.037 12.6 0.0 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase N6_N4_Mtase PF01555.18 gi|257387329|ref|YP_003177102.1| - 0.067 12.9 0.0 6 6.5 0.0 2.1 2 0 0 2 2 2 0 DNA methylase NodS PF05401.11 gi|257387329|ref|YP_003177102.1| - 0.096 12.3 0.0 0.12 12.0 0.0 1.1 1 0 0 1 1 1 0 Nodulation protein S (NodS) FtsJ PF01728.19 gi|257387329|ref|YP_003177102.1| - 0.12 12.4 0.0 0.21 11.7 0.0 1.5 1 1 0 1 1 1 0 FtsJ-like methyltransferase V-ATPase_G PF03179.15 gi|257387330|ref|YP_003177103.1| - 2.7e-06 27.8 21.6 2.8e-05 24.6 21.0 1.9 1 1 0 1 1 1 1 Vacuolar (H+)-ATPase G subunit ATP-synt_B PF00430.18 gi|257387330|ref|YP_003177103.1| - 0.00032 20.8 28.5 0.00074 19.6 28.3 1.6 1 1 0 1 1 1 1 ATP synthase B/B' CF(0) ApoLp-III PF07464.11 gi|257387330|ref|YP_003177103.1| - 0.0031 17.6 10.3 0.0036 17.4 10.3 1.0 1 0 0 1 1 1 1 Apolipophorin-III precursor (apoLp-III) PIN_8 PF18476.1 gi|257387330|ref|YP_003177103.1| - 0.014 15.2 8.0 0.017 15.0 8.0 1.0 1 0 0 1 1 1 0 PIN like domain V-ATPase_G_2 PF16999.5 gi|257387330|ref|YP_003177103.1| - 0.019 15.4 30.5 0.33 11.4 30.7 1.9 1 1 0 1 1 1 0 Vacuolar (H+)-ATPase G subunit DUF3552 PF12072.8 gi|257387330|ref|YP_003177103.1| - 0.036 13.5 28.0 0.48 9.8 21.3 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF3552) Apolipoprotein PF01442.18 gi|257387330|ref|YP_003177103.1| - 0.045 13.6 24.3 0.059 13.2 24.3 1.1 1 0 0 1 1 1 0 Apolipoprotein A1/A4/E domain HrpE PF06188.12 gi|257387330|ref|YP_003177103.1| - 0.046 13.6 16.6 0.21 11.5 16.7 1.8 1 1 0 1 1 1 0 HrpE/YscL/FliH and V-type ATPase subunit E Mitofilin PF09731.9 gi|257387330|ref|YP_003177103.1| - 0.052 12.4 16.2 0.08 11.8 16.2 1.3 1 0 0 1 1 1 0 Mitochondrial inner membrane protein DUF883 PF05957.13 gi|257387330|ref|YP_003177103.1| - 0.12 13.0 20.2 0.55 10.9 12.1 2.1 1 1 1 2 2 2 0 Bacterial protein of unknown function (DUF883) IHABP4_N PF16174.5 gi|257387330|ref|YP_003177103.1| - 0.15 12.7 13.7 0.17 12.5 13.7 1.1 1 0 0 1 1 1 0 Intracellular hyaluronan-binding protein 4 N-terminal OmpH PF03938.14 gi|257387330|ref|YP_003177103.1| - 0.15 12.4 18.7 0.18 12.1 18.7 1.1 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) YtxH PF12732.7 gi|257387330|ref|YP_003177103.1| - 0.27 11.8 13.7 0.69 10.5 1.6 2.3 1 1 1 2 2 2 0 YtxH-like protein Merozoite_SPAM PF07133.11 gi|257387330|ref|YP_003177103.1| - 0.48 10.4 23.2 0.63 10.0 23.2 1.1 1 0 0 1 1 1 0 Merozoite surface protein (SPAM) MCPVI PF02993.14 gi|257387330|ref|YP_003177103.1| - 0.59 9.9 3.0 0.68 9.7 3.0 1.2 1 0 0 1 1 1 0 Minor capsid protein VI AAA_11 PF13086.6 gi|257387330|ref|YP_003177103.1| - 0.79 9.5 9.9 0.98 9.2 9.9 1.1 1 0 0 1 1 1 0 AAA domain DivIVA PF05103.13 gi|257387330|ref|YP_003177103.1| - 1.6 8.8 20.0 1.6e+02 2.4 20.0 2.1 1 1 0 1 1 1 0 DivIVA protein Atg14 PF10186.9 gi|257387330|ref|YP_003177103.1| - 1.9 7.5 8.7 2.2 7.3 8.7 1.1 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 dCache_2 PF08269.11 gi|257387330|ref|YP_003177103.1| - 2.1 7.5 5.6 2.5 7.2 5.6 1.2 1 0 0 1 1 1 0 Cache domain EMC3_TMCO1 PF01956.16 gi|257387330|ref|YP_003177103.1| - 2.6 7.8 3.3 3 7.5 3.3 1.3 1 0 0 1 1 1 0 Integral membrane protein EMC3/TMCO1-like DUF3801 PF12687.7 gi|257387330|ref|YP_003177103.1| - 2.9 8.0 12.8 3.1 7.9 12.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3801) MCU PF04678.13 gi|257387330|ref|YP_003177103.1| - 3.2 7.8 8.4 4.4 7.4 8.4 1.2 1 0 0 1 1 1 0 Mitochondrial calcium uniporter Cdh1_DBD_1 PF18196.1 gi|257387330|ref|YP_003177103.1| - 8.5 6.7 13.4 3.3 8.0 10.0 1.8 1 1 1 2 2 2 0 Chromodomain helicase DNA-binding domain 1 V_ATPase_I PF01496.19 gi|257387331|ref|YP_003177104.1| - 4.9e-20 71.1 7.4 4.9e-09 34.7 0.0 4.5 5 0 0 5 5 5 3 V-type ATPase 116kDa subunit family Syntaxin-6_N PF09177.11 gi|257387331|ref|YP_003177104.1| - 0.0046 17.5 5.3 0.33 11.5 0.6 2.4 2 0 0 2 2 2 1 Syntaxin 6, N-terminal KASH_CCD PF14662.6 gi|257387331|ref|YP_003177104.1| - 0.009 15.9 4.3 0.029 14.2 0.1 2.1 2 0 0 2 2 2 1 Coiled-coil region of CCDC155 or KASH KfrA_N PF11740.8 gi|257387331|ref|YP_003177104.1| - 0.012 16.2 6.2 0.28 11.9 0.7 2.6 2 0 0 2 2 2 0 Plasmid replication region DNA-binding N-term Prefoldin_2 PF01920.20 gi|257387331|ref|YP_003177104.1| - 0.013 15.4 7.1 0.39 10.7 0.2 2.3 2 0 0 2 2 2 0 Prefoldin subunit Tektin PF03148.14 gi|257387331|ref|YP_003177104.1| - 0.016 14.0 2.0 0.13 10.9 0.1 2.0 2 0 0 2 2 2 0 Tektin family CENP-F_leu_zip PF10473.9 gi|257387331|ref|YP_003177104.1| - 0.054 13.5 5.2 1.3 9.1 0.3 2.3 2 0 0 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 BBS2_C PF14782.6 gi|257387331|ref|YP_003177104.1| - 0.064 12.0 0.1 1.2 7.8 0.0 2.0 2 0 0 2 2 2 0 Ciliary BBSome complex subunit 2, C-terminal STAT_alpha PF01017.20 gi|257387331|ref|YP_003177104.1| - 0.084 12.8 0.2 1.2 9.0 0.0 2.1 2 0 0 2 2 2 0 STAT protein, all-alpha domain DUF4140 PF13600.6 gi|257387331|ref|YP_003177104.1| - 0.086 13.3 9.0 0.61 10.6 1.5 2.4 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) DUF3450 PF11932.8 gi|257387331|ref|YP_003177104.1| - 0.18 11.1 1.5 3.3 6.9 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3450) APG6_N PF17675.1 gi|257387331|ref|YP_003177104.1| - 0.21 12.1 9.5 3.4 8.2 1.6 2.3 2 0 0 2 2 2 0 Apg6 coiled-coil region FlaC_arch PF05377.11 gi|257387331|ref|YP_003177104.1| - 0.28 11.6 6.3 9.8 6.7 1.3 2.7 2 1 0 2 2 2 0 Flagella accessory protein C (FlaC) DUF1664 PF07889.12 gi|257387331|ref|YP_003177104.1| - 0.33 11.0 1.5 6.8 6.8 0.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1664) DASH_Dad3 PF08656.10 gi|257387331|ref|YP_003177104.1| - 0.34 11.0 1.6 0.73 10.0 0.2 2.2 2 0 0 2 2 2 0 DASH complex subunit Dad3 RasGAP_C PF03836.15 gi|257387331|ref|YP_003177104.1| - 0.36 11.0 1.4 1.2 9.2 0.5 1.9 2 0 0 2 2 2 0 RasGAP C-terminus Baculo_PEP_C PF04513.12 gi|257387331|ref|YP_003177104.1| - 0.39 10.7 1.4 9.5 6.3 0.1 2.3 2 0 0 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF4618 PF15397.6 gi|257387331|ref|YP_003177104.1| - 0.4 10.0 3.4 13 5.1 0.0 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4618) NPV_P10 PF05531.12 gi|257387331|ref|YP_003177104.1| - 0.42 11.1 2.9 0.81 10.2 0.7 2.2 2 0 0 2 2 2 0 Nucleopolyhedrovirus P10 protein Golgin_A5 PF09787.9 gi|257387331|ref|YP_003177104.1| - 0.44 10.0 2.5 3.6 7.0 0.3 2.2 2 0 0 2 2 2 0 Golgin subfamily A member 5 ATG16 PF08614.11 gi|257387331|ref|YP_003177104.1| - 0.5 10.6 4.9 6.8 6.9 0.3 2.3 2 0 0 2 2 2 0 Autophagy protein 16 (ATG16) Spc7 PF08317.11 gi|257387331|ref|YP_003177104.1| - 0.6 8.9 2.9 3.7 6.4 0.1 2.1 2 0 0 2 2 2 0 Spc7 kinetochore protein Seryl_tRNA_N PF02403.22 gi|257387331|ref|YP_003177104.1| - 0.76 10.0 4.0 6.4 7.0 1.0 2.3 2 0 0 2 2 2 0 Seryl-tRNA synthetase N-terminal domain Prefoldin PF02996.17 gi|257387331|ref|YP_003177104.1| - 0.79 9.6 7.8 2 8.3 1.9 2.3 2 0 0 2 2 2 0 Prefoldin subunit Vir_act_alpha_C PF10400.9 gi|257387331|ref|YP_003177104.1| - 0.79 10.4 3.7 2.5 8.9 0.4 2.4 2 0 0 2 2 2 0 Virulence activator alpha C-term BST2 PF16716.5 gi|257387331|ref|YP_003177104.1| - 0.84 10.3 3.7 10 6.8 0.7 2.3 2 0 0 2 2 2 0 Bone marrow stromal antigen 2 TPR_MLP1_2 PF07926.12 gi|257387331|ref|YP_003177104.1| - 0.98 9.5 5.2 13 5.9 0.5 2.2 2 0 0 2 2 2 0 TPR/MLP1/MLP2-like protein Spc24 PF08286.11 gi|257387331|ref|YP_003177104.1| - 1 9.6 2.7 8.3 6.7 0.1 2.3 2 0 0 2 2 2 0 Spc24 subunit of Ndc80 DUF4200 PF13863.6 gi|257387331|ref|YP_003177104.1| - 1.1 9.7 5.6 0.94 9.9 0.3 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4200) FIN1 PF17300.2 gi|257387331|ref|YP_003177104.1| - 1.9 7.9 5.5 1.2 8.6 1.5 2.0 2 0 0 2 2 2 0 Filaments in between nuclei protein-1 ZapB PF06005.12 gi|257387331|ref|YP_003177104.1| - 2 8.9 8.3 6.7 7.2 1.0 2.3 2 0 0 2 2 2 0 Cell division protein ZapB TMF_TATA_bd PF12325.8 gi|257387331|ref|YP_003177104.1| - 2.1 8.6 7.7 5.7 7.2 0.8 2.3 2 0 0 2 2 2 0 TATA element modulatory factor 1 TATA binding DivIC PF04977.15 gi|257387331|ref|YP_003177104.1| - 2.5 8.0 5.2 1 9.2 0.4 2.3 2 0 0 2 2 2 0 Septum formation initiator DLP_helical PF18709.1 gi|257387331|ref|YP_003177104.1| - 3.5 6.8 4.4 19 4.3 0.4 2.2 2 0 0 2 2 2 0 Dynamin-like helical domain CLZ PF16526.5 gi|257387331|ref|YP_003177104.1| - 3.5 8.0 8.0 5.7 7.4 1.0 2.3 2 0 0 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels DUF5320 PF17253.2 gi|257387331|ref|YP_003177104.1| - 3.5 8.7 4.6 2.1 9.5 0.4 2.5 2 1 0 2 2 2 0 Family of unknown function (DUF5320) ERM PF00769.19 gi|257387331|ref|YP_003177104.1| - 3.9 7.2 10.3 32 4.2 10.3 2.0 1 1 0 1 1 1 0 Ezrin/radixin/moesin family DHR10 PF18595.1 gi|257387331|ref|YP_003177104.1| - 4.1 7.5 10.4 0.84 9.7 1.3 2.2 2 0 0 2 2 2 0 Designed helical repeat protein 10 domain DUF3958 PF13125.6 gi|257387331|ref|YP_003177104.1| - 4.3 7.6 10.0 1.5 9.1 1.0 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF3958) MerR-DNA-bind PF09278.11 gi|257387331|ref|YP_003177104.1| - 4.4 7.9 7.0 1.5 9.4 1.1 2.4 2 0 0 2 2 2 0 MerR, DNA binding SlyX PF04102.12 gi|257387331|ref|YP_003177104.1| - 5.6 7.7 6.4 26 5.5 1.0 2.5 2 0 0 2 2 2 0 SlyX E2F_CC-MB PF16421.5 gi|257387331|ref|YP_003177104.1| - 7.1 7.1 8.0 2.7 8.4 2.6 2.5 2 1 0 2 2 2 0 E2F transcription factor CC-MB domain ATP-synt_C PF00137.21 gi|257387332|ref|YP_003177105.1| - 1.1e-13 51.3 11.2 1.1e-13 51.3 11.2 1.6 2 0 0 2 2 2 1 ATP synthase subunit C vATP-synt_E PF01991.18 gi|257387333|ref|YP_003177106.1| - 1.7e-43 148.4 11.6 1.9e-43 148.2 11.6 1.0 1 0 0 1 1 1 1 ATP synthase (E/31 kDa) subunit ATP-synt_B PF00430.18 gi|257387333|ref|YP_003177106.1| - 0.39 10.8 30.7 0.16 12.0 24.3 2.1 1 1 1 2 2 2 0 ATP synthase B/B' CF(0) DivIVA PF05103.13 gi|257387333|ref|YP_003177106.1| - 3.3 7.8 18.2 0.96 9.5 13.1 2.2 1 1 1 2 2 2 0 DivIVA protein DUF4407 PF14362.6 gi|257387333|ref|YP_003177106.1| - 4.7 6.5 12.5 0.9 8.8 8.2 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) HrpE PF06188.12 gi|257387333|ref|YP_003177106.1| - 4.9 7.0 13.9 14 5.5 13.9 1.6 1 1 1 2 2 2 0 HrpE/YscL/FliH and V-type ATPase subunit E YtxH PF12732.7 gi|257387333|ref|YP_003177106.1| - 7.1 7.2 7.3 25 5.5 6.4 2.3 1 1 0 1 1 1 0 YtxH-like protein vATP-synt_AC39 PF01992.16 gi|257387334|ref|YP_003177107.1| - 2e-79 267.6 2.3 2.2e-79 267.4 2.3 1.0 1 0 0 1 1 1 1 ATP synthase (C/AC39) subunit ATP-synt_F PF01990.17 gi|257387335|ref|YP_003177108.1| - 3.7e-16 59.2 0.1 4.2e-16 59.0 0.1 1.0 1 0 0 1 1 1 1 ATP synthase (F/14-kDa) subunit Tk-SP_N-pro PF18237.1 gi|257387335|ref|YP_003177108.1| - 0.13 12.3 0.1 0.2 11.7 0.1 1.3 1 0 0 1 1 1 0 Tk-SP N-propeptide domain ATP-synt_ab PF00006.25 gi|257387336|ref|YP_003177109.1| - 2.1e-93 311.9 0.0 2.7e-93 311.5 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_Xtn PF16886.5 gi|257387336|ref|YP_003177109.1| - 3.5e-39 133.4 0.0 5.9e-39 132.7 0.0 1.4 1 0 0 1 1 1 1 ATPsynthase alpha/beta subunit N-term extension ATP-synt_ab_N PF02874.23 gi|257387336|ref|YP_003177109.1| - 2.9e-11 43.7 3.7 1.2e-10 41.7 3.7 2.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain AAA_22 PF13401.6 gi|257387336|ref|YP_003177109.1| - 0.034 14.4 0.0 0.068 13.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain Peptidase_M23 PF01551.22 gi|257387336|ref|YP_003177109.1| - 0.048 13.9 0.3 14 6.0 0.0 2.6 3 0 0 3 3 3 0 Peptidase family M23 ATP-synt_ab PF00006.25 gi|257387337|ref|YP_003177110.1| - 1.6e-65 220.7 0.0 2.1e-65 220.3 0.0 1.1 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain ATP-synt_ab_N PF02874.23 gi|257387337|ref|YP_003177110.1| - 2.3e-14 53.6 0.8 5.3e-14 52.5 0.8 1.7 1 0 0 1 1 1 1 ATP synthase alpha/beta family, beta-barrel domain HAS-barrel PF09378.10 gi|257387337|ref|YP_003177110.1| - 0.0018 18.4 0.6 0.0064 16.6 0.6 2.0 1 0 0 1 1 1 1 HAS barrel domain Bac_rhodopsin PF01036.18 gi|257387338|ref|YP_003177111.1| - 5.5e-69 232.2 15.9 6.3e-69 232.0 15.9 1.0 1 0 0 1 1 1 1 Bacteriorhodopsin-like protein DUF4149 PF13664.6 gi|257387338|ref|YP_003177111.1| - 0.012 16.0 9.4 0.15 12.4 2.5 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4149) DUF21 PF01595.20 gi|257387338|ref|YP_003177111.1| - 0.022 14.5 1.4 0.022 14.5 1.4 1.7 2 0 0 2 2 2 0 Cyclin M transmembrane N-terminal domain DUF4131 PF13567.6 gi|257387338|ref|YP_003177111.1| - 0.037 13.7 9.5 0.35 10.5 2.4 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) UCR_Fe-S_N PF10399.9 gi|257387338|ref|YP_003177111.1| - 0.59 9.5 8.3 2.8 7.4 0.0 3.0 4 0 0 4 4 4 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal GpcrRhopsn4 PF10192.9 gi|257387338|ref|YP_003177111.1| - 1.7 8.0 7.6 0.79 9.1 2.4 2.2 2 0 0 2 2 2 0 Rhodopsin-like GPCR transmembrane domain BCD PF15461.6 gi|257387340|ref|YP_003177113.1| - 7.4e-80 268.3 27.4 7.4e-80 268.3 27.4 1.6 2 0 0 2 2 2 1 Beta-carotene 15,15'-dioxygenase Tom7 PF08038.12 gi|257387340|ref|YP_003177113.1| - 0.095 12.4 2.9 7.8 6.3 0.1 3.1 3 0 0 3 3 3 0 TOM7 family ATP-synt_D PF01813.17 gi|257387341|ref|YP_003177114.1| - 6.7e-55 186.0 7.1 8.4e-55 185.7 7.1 1.1 1 0 0 1 1 1 1 ATP synthase subunit D TF_Zn_Ribbon PF08271.12 gi|257387342|ref|YP_003177115.1| - 0.023 14.2 3.0 0.35 10.4 0.1 2.6 3 0 0 3 3 3 0 TFIIB zinc-binding Ribosomal_S27e PF01667.17 gi|257387342|ref|YP_003177115.1| - 0.095 12.4 0.1 0.095 12.4 0.1 1.5 2 0 0 2 2 2 0 Ribosomal protein S27 zinc_ribbon_2 PF13240.6 gi|257387342|ref|YP_003177115.1| - 0.54 10.0 4.4 11 5.9 1.8 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|257387342|ref|YP_003177115.1| - 0.6 9.6 3.3 5.7 6.5 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|257387342|ref|YP_003177115.1| - 2.2 8.5 4.9 33 4.7 4.9 2.2 1 1 0 1 1 1 0 Zinc ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|257387342|ref|YP_003177115.1| - 3.1 7.8 5.3 3.8 7.5 1.2 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon eRF1_2 PF03464.15 gi|257387344|ref|YP_003177117.1| - 1.9e-42 144.7 0.0 3.9e-42 143.7 0.0 1.5 1 0 0 1 1 1 1 eRF1 domain 2 eRF1_3 PF03465.15 gi|257387344|ref|YP_003177117.1| - 5e-26 91.4 0.3 2.6e-25 89.1 0.0 2.4 3 0 0 3 3 3 1 eRF1 domain 3 acVLRF1 PF18859.1 gi|257387344|ref|YP_003177117.1| - 5.6e-18 65.5 0.1 1.7e-17 63.9 0.1 1.8 1 0 0 1 1 1 1 Actinobacteria/chloroflexi VLRF1 release factor baeRF_family10 PF18854.1 gi|257387344|ref|YP_003177117.1| - 6.1e-14 52.4 0.8 1e-12 48.5 0.0 2.6 3 0 0 3 3 3 1 Bacterial archaeo-eukaryotic release factor family 10 eRF1_1 PF03463.15 gi|257387344|ref|YP_003177117.1| - 7.2e-11 42.2 0.0 1.1e-10 41.6 0.0 1.3 1 0 0 1 1 1 1 eRF1 domain 1 Peptidase_M19 PF01244.21 gi|257387344|ref|YP_003177117.1| - 0.068 12.3 0.3 1.5 7.9 0.0 2.2 2 0 0 2 2 2 0 Membrane dipeptidase (Peptidase family M19) DUF406 PF04175.12 gi|257387344|ref|YP_003177117.1| - 0.3 11.6 1.8 0.51 10.9 0.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF406) O-FucT PF10250.9 gi|257387344|ref|YP_003177117.1| - 0.31 10.7 1.3 0.74 9.5 0.0 1.9 2 0 0 2 2 2 0 GDP-fucose protein O-fucosyltransferase AAA_31 PF13614.6 gi|257387345|ref|YP_003177118.1| - 1.3e-18 67.5 0.0 2.6e-18 66.6 0.0 1.5 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|257387345|ref|YP_003177118.1| - 5.5e-18 65.3 0.0 1.2e-17 64.1 0.0 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|257387345|ref|YP_003177118.1| - 1.4e-16 60.7 10.0 8.5e-15 54.9 10.0 2.8 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CBP_BcsQ PF06564.12 gi|257387345|ref|YP_003177118.1| - 3.9e-10 39.6 0.5 6e-10 39.0 0.1 1.4 2 0 0 2 2 2 1 Cellulose biosynthesis protein BcsQ MipZ PF09140.11 gi|257387345|ref|YP_003177118.1| - 4e-09 36.1 0.8 1.1e-08 34.7 0.4 1.8 2 1 0 2 2 2 1 ATPase MipZ Fer4_NifH PF00142.18 gi|257387345|ref|YP_003177118.1| - 2.9e-07 30.2 0.9 0.00049 19.6 0.2 2.1 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_26 PF13500.6 gi|257387345|ref|YP_003177118.1| - 3.8e-07 30.1 4.0 1e-06 28.7 0.3 2.8 2 1 0 2 2 2 1 AAA domain ArsA_ATPase PF02374.15 gi|257387345|ref|YP_003177118.1| - 1.1e-06 28.1 2.8 2.3e-05 23.7 1.9 2.8 2 1 1 3 3 3 1 Anion-transporting ATPase SRP54 PF00448.22 gi|257387345|ref|YP_003177118.1| - 0.0014 18.3 3.8 0.12 12.0 0.7 3.0 3 0 0 3 3 3 1 SRP54-type protein, GTPase domain DUF1611 PF07755.11 gi|257387345|ref|YP_003177118.1| - 0.0018 17.6 2.6 0.078 12.3 0.3 2.8 2 1 1 3 3 3 1 Domain of unknown function (DUF1611_C) P-loop domain AAA_24 PF13479.6 gi|257387345|ref|YP_003177118.1| - 0.0042 16.8 0.0 0.0075 16.0 0.0 1.4 1 0 0 1 1 1 1 AAA domain MeaB PF03308.16 gi|257387345|ref|YP_003177118.1| - 0.011 14.7 7.9 0.081 11.9 7.9 2.0 1 1 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_30 PF13604.6 gi|257387345|ref|YP_003177118.1| - 0.018 14.8 1.8 0.031 14.0 0.4 2.0 2 0 0 2 2 2 0 AAA domain VirC1 PF07015.11 gi|257387345|ref|YP_003177118.1| - 0.028 13.7 1.1 0.12 11.7 0.4 2.0 2 0 0 2 2 2 0 VirC1 protein CLP1_P PF16575.5 gi|257387345|ref|YP_003177118.1| - 0.042 13.6 0.1 0.093 12.5 0.1 1.5 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop APS_kinase PF01583.20 gi|257387345|ref|YP_003177118.1| - 0.054 13.4 0.0 0.095 12.6 0.0 1.3 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_25 PF13481.6 gi|257387345|ref|YP_003177118.1| - 0.077 12.6 2.9 0.43 10.1 2.9 2.1 1 1 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|257387345|ref|YP_003177118.1| - 0.12 11.6 0.6 0.25 10.6 0.6 1.4 1 0 0 1 1 1 0 Zeta toxin Glyco_transf_4 PF13439.6 gi|257387345|ref|YP_003177118.1| - 0.13 12.3 0.0 0.33 10.9 0.0 1.7 1 1 0 1 1 1 0 Glycosyltransferase Family 4 tRNA-synt_1d PF00750.19 gi|257387346|ref|YP_003177119.1| - 9.7e-36 123.4 0.0 1.3e-35 123.0 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (R) DALR_1 PF05746.15 gi|257387346|ref|YP_003177119.1| - 1.2e-33 115.8 0.1 6e-33 113.5 0.0 2.2 2 0 0 2 2 2 1 DALR anticodon binding domain Arg_tRNA_synt_N PF03485.16 gi|257387346|ref|YP_003177119.1| - 6.4e-10 39.5 0.0 2.5e-09 37.6 0.0 2.0 2 0 0 2 2 2 1 Arginyl tRNA synthetase N terminal domain tRNA-synt_1e PF01406.19 gi|257387346|ref|YP_003177119.1| - 0.043 13.2 0.0 0.074 12.4 0.0 1.4 1 0 0 1 1 1 0 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|257387346|ref|YP_003177119.1| - 0.09 11.7 0.0 0.63 8.9 0.0 2.0 2 0 0 2 2 2 0 tRNA synthetases class I (K) Jag_N PF14804.6 gi|257387346|ref|YP_003177119.1| - 9.6 6.6 6.2 1.2 9.5 0.3 2.6 3 0 0 3 3 3 0 Jag N-terminus Peptidase_M50 PF02163.22 gi|257387347|ref|YP_003177120.1| - 1.8e-21 76.6 0.0 3.5e-21 75.6 0.0 1.6 1 1 0 1 1 1 1 Peptidase family M50 PDZ_2 PF13180.6 gi|257387347|ref|YP_003177120.1| - 3.5e-16 59.3 2.7 3.1e-06 27.4 0.0 3.6 1 1 2 3 3 3 3 PDZ domain PDZ_6 PF17820.1 gi|257387347|ref|YP_003177120.1| - 1.2e-10 41.1 1.7 5.5e-07 29.3 0.4 3.6 3 0 0 3 3 3 1 PDZ domain Tricorn_PDZ PF14685.6 gi|257387347|ref|YP_003177120.1| - 8.8e-08 32.0 6.2 0.0015 18.4 0.7 3.4 2 1 1 3 3 3 3 Tricorn protease PDZ domain PDZ PF00595.24 gi|257387347|ref|YP_003177120.1| - 1.3e-07 31.8 1.6 1.2e-06 28.8 0.2 3.0 3 0 0 3 3 3 1 PDZ domain DUF2583 PF10762.9 gi|257387347|ref|YP_003177120.1| - 0.024 15.0 0.6 0.14 12.6 0.0 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF2583) PDZ_1 PF12812.7 gi|257387347|ref|YP_003177120.1| - 0.064 13.3 0.2 8.5 6.5 0.0 3.0 3 0 0 3 3 3 0 PDZ-like domain DUF2292 PF10055.9 gi|257387347|ref|YP_003177120.1| - 0.29 10.8 1.2 0.87 9.3 0.1 2.2 2 0 0 2 2 2 0 Uncharacterized small protein (DUF2292) tRNA-synt_1f PF01921.18 gi|257387348|ref|YP_003177121.1| - 2.8e-97 325.9 0.0 3.9e-97 325.4 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (K) tRNA-synt_1g PF09334.11 gi|257387348|ref|YP_003177121.1| - 1.7e-07 30.3 0.0 2.7e-05 23.1 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|257387348|ref|YP_003177121.1| - 0.033 13.5 0.0 0.63 9.3 0.0 2.5 3 0 0 3 3 3 0 tRNA synthetases class I (C) catalytic domain RsbRD_N PF14361.6 gi|257387348|ref|YP_003177121.1| - 0.24 12.1 0.6 0.66 10.7 0.2 1.9 2 0 0 2 2 2 0 RsbT co-antagonist protein rsbRD N-terminal domain AA_kinase PF00696.28 gi|257387349|ref|YP_003177122.1| - 7.4e-30 104.3 2.7 2e-29 102.9 2.7 1.6 1 1 0 1 1 1 1 Amino acid kinase family BMC PF00936.19 gi|257387349|ref|YP_003177122.1| - 0.0069 16.4 1.0 0.027 14.4 0.0 2.3 2 0 0 2 2 2 1 BMC domain HTH_Crp_2 PF13545.6 gi|257387350|ref|YP_003177123.1| - 0.14 12.1 0.0 0.19 11.7 0.0 1.1 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain DbpA PF03880.15 gi|257387350|ref|YP_003177123.1| - 0.18 11.8 0.0 0.21 11.6 0.0 1.3 1 0 0 1 1 1 0 DbpA RNA binding domain Peptidase_M50 PF02163.22 gi|257387351|ref|YP_003177124.1| - 5.6e-17 61.9 5.5 3.4e-09 36.4 0.0 2.4 1 1 1 2 2 2 2 Peptidase family M50 AIRS PF00586.24 gi|257387352|ref|YP_003177125.1| - 6.3e-17 62.0 4.8 1.2e-16 61.1 4.8 1.5 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain AIRS_C PF02769.22 gi|257387352|ref|YP_003177125.1| - 4.2e-11 43.2 0.1 6.9e-11 42.5 0.1 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain LPG_synthase_TM PF03706.13 gi|257387353|ref|YP_003177126.1| - 5.3e-41 141.1 45.4 6.4e-41 140.8 45.4 1.0 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region Ribosomal_S19e PF01090.19 gi|257387354|ref|YP_003177127.1| - 2.7e-48 163.1 0.0 3.1e-48 163.0 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein S19e dsDNA_bind PF01984.20 gi|257387355|ref|YP_003177128.1| - 2.4e-26 92.2 16.6 2.9e-26 91.9 16.6 1.1 1 0 0 1 1 1 1 Double-stranded DNA-binding domain PCI PF01399.27 gi|257387355|ref|YP_003177128.1| - 0.023 15.2 0.5 0.043 14.3 0.5 1.8 1 1 0 1 1 1 0 PCI domain tRNA-synt_1c PF00749.21 gi|257387355|ref|YP_003177128.1| - 5.5 5.8 8.2 5.1 5.9 7.6 1.3 1 1 0 1 1 1 0 tRNA synthetases class I (E and Q), catalytic domain Diphthami_syn_2 PF01902.17 gi|257387356|ref|YP_003177129.1| - 0.022 14.3 0.0 0.085 12.3 0.0 1.9 2 0 0 2 2 2 0 Diphthamide synthase QueC PF06508.13 gi|257387356|ref|YP_003177129.1| - 0.089 12.3 0.0 0.12 11.8 0.0 1.3 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC DEK_C PF08766.11 gi|257387356|ref|YP_003177129.1| - 0.17 11.9 0.0 2.2 8.3 0.0 2.2 2 0 0 2 2 2 0 DEK C terminal domain tRNA-synt_His PF13393.6 gi|257387357|ref|YP_003177130.1| - 5e-53 180.4 0.1 6e-53 180.1 0.1 1.1 1 0 0 1 1 1 1 Histidyl-tRNA synthetase HGTP_anticodon PF03129.20 gi|257387357|ref|YP_003177130.1| - 4.5e-13 49.2 0.0 1.2e-12 47.8 0.0 1.7 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|257387357|ref|YP_003177130.1| - 5.1e-10 39.6 0.0 2.7e-09 37.3 0.0 2.0 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) tRNA-synt_2d PF01409.20 gi|257387357|ref|YP_003177130.1| - 0.00013 21.5 0.0 0.00027 20.5 0.0 1.5 1 1 0 1 1 1 1 tRNA synthetases class II core domain (F) SHOCT PF09851.9 gi|257387358|ref|YP_003177131.1| - 7.5e-09 35.1 0.5 1.3e-08 34.3 0.5 1.4 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.11 gi|257387358|ref|YP_003177131.1| - 5e-05 23.3 0.3 9e-05 22.5 0.3 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF1707) Acetyltransf_1 PF00583.25 gi|257387359|ref|YP_003177132.1| - 1.7e-14 54.0 0.0 2.2e-14 53.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|257387359|ref|YP_003177132.1| - 1.9e-11 44.0 0.0 2.2e-11 43.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|257387359|ref|YP_003177132.1| - 4.3e-11 43.1 0.0 6.6e-11 42.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|257387359|ref|YP_003177132.1| - 7.5e-08 33.2 0.0 9.7e-08 32.8 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|257387359|ref|YP_003177132.1| - 1.9e-05 24.7 0.1 0.0095 16.0 0.0 2.1 2 0 0 2 2 2 2 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|257387359|ref|YP_003177132.1| - 9.9e-05 22.2 0.0 0.00016 21.5 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_4 PF13420.7 gi|257387359|ref|YP_003177132.1| - 0.0017 18.5 0.0 0.0026 17.9 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain PseudoU_synth_1 PF01416.20 gi|257387360|ref|YP_003177133.1| - 7.3e-15 55.4 0.0 1.2e-10 41.8 0.0 2.3 2 0 0 2 2 2 2 tRNA pseudouridine synthase Peptidase_M3 PF01432.20 gi|257387361|ref|YP_003177134.1| - 1.7e-64 218.8 0.9 3.2e-64 217.9 0.9 1.5 1 0 0 1 1 1 1 Peptidase family M3 Peptidase_M3_N PF08439.10 gi|257387361|ref|YP_003177134.1| - 3.7e-20 72.0 0.2 3.7e-20 72.0 0.2 2.5 3 0 0 3 3 3 1 Oligopeptidase F RNase_E_G PF10150.9 gi|257387361|ref|YP_003177134.1| - 0.044 13.2 0.2 0.1 12.0 0.2 1.6 1 0 0 1 1 1 0 Ribonuclease E/G family Reprolysin_3 PF13582.6 gi|257387361|ref|YP_003177134.1| - 0.053 14.0 1.5 0.15 12.6 0.1 2.5 2 1 0 2 2 2 0 Metallo-peptidase family M12B Reprolysin-like Sipho_Gp157 PF05565.11 gi|257387361|ref|YP_003177134.1| - 0.098 12.7 1.9 0.22 11.5 1.4 1.9 2 0 0 2 2 2 0 Siphovirus Gp157 Reprolysin_5 PF13688.6 gi|257387361|ref|YP_003177134.1| - 0.1 12.7 0.0 0.32 11.1 0.0 1.8 1 0 0 1 1 1 0 Metallo-peptidase family M12 DUF349 PF03993.12 gi|257387361|ref|YP_003177134.1| - 0.12 12.7 1.6 12 6.2 0.1 2.7 2 0 0 2 2 2 0 Domain of Unknown Function (DUF349) Aida_N PF08910.10 gi|257387361|ref|YP_003177134.1| - 0.14 12.6 1.0 0.97 9.9 0.2 2.6 2 0 0 2 2 2 0 Aida N-terminus AAA PF00004.29 gi|257387362|ref|YP_003177135.1| - 1.1e-43 148.8 0.1 2.6e-43 147.6 0.1 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|257387362|ref|YP_003177135.1| - 3.1e-11 42.9 0.3 3.1e-11 42.9 0.3 2.7 3 0 0 3 3 2 1 AAA+ lid domain AAA_2 PF07724.14 gi|257387362|ref|YP_003177135.1| - 2.9e-08 34.0 0.0 7.4e-08 32.7 0.0 1.7 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) RuvB_N PF05496.12 gi|257387362|ref|YP_003177135.1| - 3.6e-08 33.3 0.2 3.9e-07 30.0 0.0 2.5 3 0 0 3 3 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_5 PF07728.14 gi|257387362|ref|YP_003177135.1| - 1.2e-06 28.6 1.5 5.2e-06 26.5 0.2 2.6 2 1 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|257387362|ref|YP_003177135.1| - 3.2e-06 27.6 4.3 0.00016 22.1 0.0 3.1 2 1 1 3 3 3 1 AAA ATPase domain AAA_22 PF13401.6 gi|257387362|ref|YP_003177135.1| - 2.3e-05 24.7 2.8 0.0012 19.1 0.0 3.0 2 1 1 3 3 3 1 AAA domain AAA_33 PF13671.6 gi|257387362|ref|YP_003177135.1| - 0.00048 20.3 0.7 0.0017 18.5 0.1 2.4 2 1 0 2 2 2 1 AAA domain TIP49 PF06068.13 gi|257387362|ref|YP_003177135.1| - 0.00057 19.2 0.9 0.0012 18.2 0.0 1.8 2 1 0 2 2 1 1 TIP49 P-loop domain Prot_ATP_ID_OB PF16450.5 gi|257387362|ref|YP_003177135.1| - 0.00078 19.4 1.3 0.0016 18.4 0.3 2.1 2 1 0 2 2 1 1 Proteasomal ATPase OB C-terminal domain DUF815 PF05673.13 gi|257387362|ref|YP_003177135.1| - 0.00089 18.5 0.0 0.0016 17.7 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF815) NTPase_1 PF03266.15 gi|257387362|ref|YP_003177135.1| - 0.0018 18.2 1.5 0.27 11.1 0.1 2.9 2 2 0 2 2 2 1 NTPase AAA_14 PF13173.6 gi|257387362|ref|YP_003177135.1| - 0.0021 18.1 0.1 0.0058 16.7 0.0 1.7 2 0 0 2 2 1 1 AAA domain Mg_chelatase PF01078.21 gi|257387362|ref|YP_003177135.1| - 0.0023 17.3 0.0 0.0056 16.1 0.0 1.6 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_28 PF13521.6 gi|257387362|ref|YP_003177135.1| - 0.003 17.8 0.7 0.0074 16.5 0.1 2.1 2 1 0 2 2 1 1 AAA domain Sigma54_activat PF00158.26 gi|257387362|ref|YP_003177135.1| - 0.0036 17.0 0.2 0.044 13.5 0.0 2.4 2 1 0 2 2 2 1 Sigma-54 interaction domain Prot_ATP_OB_N PF17758.1 gi|257387362|ref|YP_003177135.1| - 0.0042 16.7 0.1 0.012 15.3 0.1 1.8 1 0 0 1 1 1 1 Proteasomal ATPase OB N-terminal domain AAA_17 PF13207.6 gi|257387362|ref|YP_003177135.1| - 0.0048 17.3 1.2 0.028 14.8 0.0 2.5 2 1 0 2 2 2 1 AAA domain NACHT PF05729.12 gi|257387362|ref|YP_003177135.1| - 0.0049 16.8 0.2 0.042 13.8 0.0 2.3 2 0 0 2 2 2 1 NACHT domain AAA_18 PF13238.6 gi|257387362|ref|YP_003177135.1| - 0.0061 17.1 0.1 0.027 15.0 0.0 2.2 2 1 0 2 2 2 1 AAA domain Rootletin PF15035.6 gi|257387362|ref|YP_003177135.1| - 0.0082 16.2 1.1 0.017 15.1 1.1 1.5 1 0 0 1 1 1 1 Ciliary rootlet component, centrosome cohesion IstB_IS21 PF01695.17 gi|257387362|ref|YP_003177135.1| - 0.009 15.8 0.0 0.02 14.6 0.0 1.5 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_11 PF13086.6 gi|257387362|ref|YP_003177135.1| - 0.013 15.3 0.2 0.088 12.6 0.0 2.1 2 0 0 2 2 2 0 AAA domain Sec3_C PF09763.9 gi|257387362|ref|YP_003177135.1| - 0.018 13.5 0.6 0.029 12.8 0.6 1.3 1 0 0 1 1 1 0 Exocyst complex component Sec3 AAA_3 PF07726.11 gi|257387362|ref|YP_003177135.1| - 0.018 14.9 0.0 0.043 13.7 0.0 1.7 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) TsaE PF02367.17 gi|257387362|ref|YP_003177135.1| - 0.02 14.9 0.0 0.039 14.0 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE DUF4757 PF15949.5 gi|257387362|ref|YP_003177135.1| - 0.022 15.3 0.3 0.04 14.4 0.3 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4757) AAA_7 PF12775.7 gi|257387362|ref|YP_003177135.1| - 0.027 14.0 0.0 0.068 12.7 0.0 1.6 2 0 0 2 2 1 0 P-loop containing dynein motor region NB-ARC PF00931.22 gi|257387362|ref|YP_003177135.1| - 0.03 13.5 0.0 0.061 12.5 0.0 1.5 1 1 0 1 1 1 0 NB-ARC domain RNA_helicase PF00910.22 gi|257387362|ref|YP_003177135.1| - 0.03 14.7 0.0 0.082 13.3 0.0 1.8 2 0 0 2 2 1 0 RNA helicase AAA_24 PF13479.6 gi|257387362|ref|YP_003177135.1| - 0.043 13.5 0.6 0.16 11.7 0.1 2.2 2 1 0 2 2 2 0 AAA domain CPT PF07931.12 gi|257387362|ref|YP_003177135.1| - 0.044 13.6 0.0 0.088 12.6 0.0 1.6 1 0 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein AAA_30 PF13604.6 gi|257387362|ref|YP_003177135.1| - 0.05 13.3 0.2 0.14 11.8 0.2 1.9 1 1 0 1 1 1 0 AAA domain Torsin PF06309.11 gi|257387362|ref|YP_003177135.1| - 0.05 13.7 0.0 0.095 12.8 0.0 1.4 1 0 0 1 1 1 0 Torsin AAA_23 PF13476.6 gi|257387362|ref|YP_003177135.1| - 0.056 14.0 0.2 7.5 7.0 0.0 2.6 2 1 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|257387362|ref|YP_003177135.1| - 0.087 13.3 0.2 0.26 11.8 0.0 2.0 2 1 0 2 2 1 0 ABC transporter Macoilin PF09726.9 gi|257387362|ref|YP_003177135.1| - 0.092 11.3 0.4 0.13 10.8 0.4 1.1 1 0 0 1 1 1 0 Macoilin family DUF730 PF05325.11 gi|257387362|ref|YP_003177135.1| - 0.12 12.4 0.7 0.88 9.6 0.2 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF730) ApoO PF09769.9 gi|257387362|ref|YP_003177135.1| - 0.14 12.1 0.0 2.8 7.9 0.0 2.2 2 0 0 2 2 2 0 Apolipoprotein O Parvo_NS1 PF01057.17 gi|257387362|ref|YP_003177135.1| - 0.18 10.9 0.0 0.33 10.0 0.0 1.4 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 ATPase PF06745.13 gi|257387362|ref|YP_003177135.1| - 0.26 10.6 3.3 0.72 9.2 0.0 2.6 2 1 0 3 3 3 0 KaiC CENP-Q PF13094.6 gi|257387362|ref|YP_003177135.1| - 0.59 10.3 4.3 1.4 9.1 2.2 2.3 3 0 0 3 3 2 0 CENP-Q, a CENPA-CAD centromere complex subunit DUF4140 PF13600.6 gi|257387362|ref|YP_003177135.1| - 1.8 9.1 6.9 2.3 8.7 1.0 3.1 2 1 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) ZapB PF06005.12 gi|257387362|ref|YP_003177135.1| - 2.7 8.5 5.3 1 9.8 1.7 2.3 3 0 0 3 3 1 0 Cell division protein ZapB AAA_25 PF13481.6 gi|257387362|ref|YP_003177135.1| - 3.8 7.1 10.5 0.65 9.5 0.1 3.6 3 2 1 4 4 4 0 AAA domain DMPK_coil PF08826.10 gi|257387362|ref|YP_003177135.1| - 5.1 7.3 10.4 0.31 11.2 2.3 3.0 4 0 0 4 4 3 0 DMPK coiled coil domain like Usp PF00582.26 gi|257387363|ref|YP_003177136.1| - 3.6e-29 102.1 1.4 4e-29 101.9 1.4 1.0 1 0 0 1 1 1 1 Universal stress protein family Radical_SAM PF04055.21 gi|257387363|ref|YP_003177136.1| - 0.021 15.2 0.1 0.027 14.8 0.1 1.1 1 0 0 1 1 1 0 Radical SAM superfamily DNA_photolyase PF00875.18 gi|257387363|ref|YP_003177136.1| - 0.031 14.3 0.0 0.067 13.2 0.0 1.6 1 1 0 1 1 1 0 DNA photolyase PASTA PF03793.19 gi|257387363|ref|YP_003177136.1| - 0.058 13.3 2.1 2.6 8.0 0.1 2.8 2 1 1 3 3 3 0 PASTA domain PvlArgDC PF01862.16 gi|257387364|ref|YP_003177137.1| - 7.8e-33 113.6 0.1 9.2e-33 113.3 0.1 1.0 1 0 0 1 1 1 1 Pyruvoyl-dependent arginine decarboxylase (PvlArgDC) DUF3945 PF13101.6 gi|257387365|ref|YP_003177138.1| - 0.0073 16.0 0.0 0.77 9.5 0.0 2.2 2 0 0 2 2 2 2 Protein of unknown function (DUF3945) DUF2178 PF09946.9 gi|257387365|ref|YP_003177138.1| - 0.19 11.9 0.0 0.22 11.7 0.0 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2178) DUF5429 PF17494.2 gi|257387366|ref|YP_003177139.1| - 0.094 12.8 1.2 0.11 12.5 1.2 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5429) GTP_EFTU PF00009.27 gi|257387367|ref|YP_003177140.1| - 3.7e-30 104.9 0.1 5.8e-29 101.0 0.1 2.2 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D4 PF14578.6 gi|257387367|ref|YP_003177140.1| - 1.5e-25 88.9 0.0 4e-25 87.5 0.0 1.8 1 0 0 1 1 1 1 Elongation factor Tu domain 4 IF-2 PF11987.8 gi|257387367|ref|YP_003177140.1| - 5.5e-21 74.7 0.8 2.4e-20 72.6 0.1 2.5 3 0 0 3 3 3 1 Translation-initiation factor 2 GTP_EFTU_D2 PF03144.25 gi|257387367|ref|YP_003177140.1| - 8.6e-13 48.5 7.7 2.4e-08 34.2 1.0 3.2 2 1 0 2 2 2 2 Elongation factor Tu domain 2 MMR_HSR1 PF01926.23 gi|257387367|ref|YP_003177140.1| - 2.3e-08 34.1 0.1 6.2e-08 32.7 0.0 1.8 2 0 0 2 2 2 1 50S ribosome-binding GTPase Dynamin_N PF00350.23 gi|257387367|ref|YP_003177140.1| - 0.00075 19.6 0.3 0.11 12.5 0.1 2.5 2 0 0 2 2 2 1 Dynamin family ATP_bind_1 PF03029.17 gi|257387367|ref|YP_003177140.1| - 0.0048 16.7 0.0 0.011 15.6 0.0 1.5 1 0 0 1 1 1 1 Conserved hypothetical ATP binding protein Roc PF08477.13 gi|257387367|ref|YP_003177140.1| - 0.062 13.5 0.0 0.22 11.8 0.0 2.0 2 1 0 2 2 2 0 Ras of Complex, Roc, domain of DAPkinase Endonuc_Holl PF10107.9 gi|257387367|ref|YP_003177140.1| - 0.26 11.1 1.5 3.3 7.5 0.1 2.6 3 0 0 3 3 3 0 Endonuclease related to archaeal Holliday junction resolvase Copper-bind PF00127.20 gi|257387368|ref|YP_003177141.1| - 1.6e-15 57.4 0.0 2.2e-15 56.9 0.0 1.2 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family PRC PF05239.16 gi|257387369|ref|YP_003177142.1| - 9.9e-12 44.8 0.1 1.1e-11 44.6 0.1 1.0 1 0 0 1 1 1 1 PRC-barrel domain PIN_6 PF17146.4 gi|257387370|ref|YP_003177143.1| - 3e-13 50.1 0.0 5.3e-13 49.3 0.0 1.4 1 0 0 1 1 1 1 PIN domain of ribonuclease Zn-ribbon_8 PF09723.10 gi|257387370|ref|YP_003177143.1| - 0.00024 21.2 1.9 0.0006 19.9 1.9 1.7 1 0 0 1 1 1 1 Zinc ribbon domain HypA PF01155.19 gi|257387370|ref|YP_003177143.1| - 0.00072 19.6 0.9 0.0014 18.7 0.9 1.6 1 1 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA PIN_5 PF08745.11 gi|257387370|ref|YP_003177143.1| - 0.0027 17.2 0.1 0.006 16.0 0.1 1.6 2 0 0 2 2 2 1 PINc domain ribonuclease DUF4411 PF14367.6 gi|257387370|ref|YP_003177143.1| - 0.0029 17.5 0.1 0.1 12.5 0.0 2.2 1 1 1 2 2 2 1 Domain of unknown function (DUF4411) Rad50_zn_hook PF04423.14 gi|257387370|ref|YP_003177143.1| - 0.0066 16.3 1.6 0.082 12.8 0.8 2.7 1 1 1 2 2 2 2 Rad50 zinc hook motif DNA_ligase_ZBD PF03119.16 gi|257387370|ref|YP_003177143.1| - 0.0068 16.4 0.9 0.16 12.0 0.1 2.6 2 0 0 2 2 2 1 NAD-dependent DNA ligase C4 zinc finger domain DZR PF12773.7 gi|257387370|ref|YP_003177143.1| - 0.0094 16.0 0.3 0.014 15.4 0.3 1.3 1 0 0 1 1 1 1 Double zinc ribbon zf-C3HC4_3 PF13920.6 gi|257387370|ref|YP_003177143.1| - 0.01 15.7 0.7 0.014 15.2 0.7 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) zinc-ribbons_6 PF07191.12 gi|257387370|ref|YP_003177143.1| - 0.011 15.7 0.4 0.017 15.1 0.4 1.2 1 0 0 1 1 1 0 zinc-ribbons C1_2 PF03107.16 gi|257387370|ref|YP_003177143.1| - 0.014 15.7 0.3 0.025 14.9 0.3 1.3 1 0 0 1 1 1 0 C1 domain zinc_ribbon_15 PF17032.5 gi|257387370|ref|YP_003177143.1| - 0.019 15.7 0.2 0.027 15.2 0.2 1.2 1 0 0 1 1 1 0 zinc-ribbon family Prok-RING_4 PF14447.6 gi|257387370|ref|YP_003177143.1| - 0.049 13.5 2.1 0.088 12.7 2.1 1.4 1 0 0 1 1 1 0 Prokaryotic RING finger family 4 Prok-RING_1 PF14446.6 gi|257387370|ref|YP_003177143.1| - 0.068 13.1 1.3 0.12 12.3 1.3 1.4 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 zf-C2H2_4 PF13894.6 gi|257387370|ref|YP_003177143.1| - 0.27 12.2 2.1 12 7.0 0.2 2.4 1 1 1 2 2 2 0 C2H2-type zinc finger zf-C3HC4_2 PF13923.6 gi|257387370|ref|YP_003177143.1| - 0.46 10.4 2.4 0.72 9.7 2.4 1.3 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) YhfH PF14149.6 gi|257387370|ref|YP_003177143.1| - 0.62 10.1 3.3 7.4 6.6 2.2 2.4 1 1 1 2 2 2 0 YhfH-like protein Nudix_N_2 PF14803.6 gi|257387370|ref|YP_003177143.1| - 0.65 10.0 4.5 25 4.9 0.1 3.2 3 0 0 3 3 3 0 Nudix N-terminal zf-C2H2 PF00096.26 gi|257387370|ref|YP_003177143.1| - 0.68 10.5 3.5 3 8.5 0.3 2.3 1 1 1 2 2 2 0 Zinc finger, C2H2 type zf-C2HC_2 PF13913.6 gi|257387370|ref|YP_003177143.1| - 0.73 9.8 8.4 0.23 11.4 0.9 2.3 2 0 0 2 2 2 0 zinc-finger of a C2HC-type TF_Zn_Ribbon PF08271.12 gi|257387370|ref|YP_003177143.1| - 9.3 5.9 8.3 10 5.7 0.4 3.4 2 1 1 3 3 3 0 TFIIB zinc-binding IF2_N PF04760.15 gi|257387371|ref|YP_003177144.1| - 0.0099 15.7 0.1 0.014 15.2 0.0 1.3 1 1 0 1 1 1 1 Translation initiation factor IF-2, N-terminal region RHH_1 PF01402.21 gi|257387371|ref|YP_003177144.1| - 0.018 14.9 0.1 0.021 14.8 0.1 1.1 1 0 0 1 1 1 0 Ribbon-helix-helix protein, copG family DUF3782 PF12644.7 gi|257387371|ref|YP_003177144.1| - 0.02 15.1 0.0 0.021 14.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3782) DUF3562 PF12085.8 gi|257387371|ref|YP_003177144.1| - 0.029 14.0 0.1 0.031 13.9 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3562) CPBP PF02517.16 gi|257387372|ref|YP_003177145.1| - 1.9e-19 69.8 3.7 1.9e-19 69.8 3.7 2.2 2 1 0 2 2 2 1 CPBP intramembrane metalloprotease PGI PF00342.19 gi|257387373|ref|YP_003177146.1| - 5.7e-31 107.6 0.0 2.1e-25 89.3 0.0 2.1 2 0 0 2 2 2 2 Phosphoglucose isomerase SecD_SecF PF02355.16 gi|257387376|ref|YP_003177149.1| - 7.8e-26 90.6 13.5 7.8e-26 90.6 13.5 1.8 2 0 0 2 2 2 1 Protein export membrane protein Sec_GG PF07549.14 gi|257387376|ref|YP_003177149.1| - 4.2e-05 22.9 0.0 0.00013 21.3 0.0 1.9 1 0 0 1 1 1 1 SecD/SecF GG Motif Patched PF02460.18 gi|257387376|ref|YP_003177149.1| - 5.4 5.0 15.1 8.5 4.3 15.1 1.3 1 0 0 1 1 1 0 Patched family SecD_SecF PF02355.16 gi|257387377|ref|YP_003177150.1| - 1.5e-17 63.6 5.4 3.7e-17 62.3 5.4 1.5 1 0 0 1 1 1 1 Protein export membrane protein MMPL PF03176.15 gi|257387377|ref|YP_003177150.1| - 6.1e-05 22.1 7.8 6.1e-05 22.1 7.8 1.9 2 0 0 2 2 2 1 MMPL family UPF0180 PF03698.13 gi|257387377|ref|YP_003177150.1| - 0.055 13.6 0.1 0.38 11.0 0.1 2.5 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0180) Arg_repressor PF01316.21 gi|257387377|ref|YP_003177150.1| - 0.079 12.7 0.5 0.6 9.9 0.1 2.4 2 0 0 2 2 2 0 Arginine repressor, DNA binding domain RNase_HII PF01351.18 gi|257387378|ref|YP_003177151.1| - 7.4e-36 123.8 0.0 8.6e-36 123.6 0.0 1.0 1 0 0 1 1 1 1 Ribonuclease HII eIF-5_eIF-2B PF01873.17 gi|257387379|ref|YP_003177152.1| - 6.9e-31 106.6 0.0 9.8e-31 106.1 0.0 1.2 1 0 0 1 1 1 1 Domain found in IF2B/IF5 TRAM PF01938.20 gi|257387379|ref|YP_003177152.1| - 3.7e-09 36.4 0.4 5.6e-09 35.9 0.4 1.3 1 0 0 1 1 1 1 TRAM domain Lar_restr_allev PF14354.6 gi|257387379|ref|YP_003177152.1| - 0.059 13.8 0.4 0.51 10.8 0.4 2.1 1 1 1 2 2 2 0 Restriction alleviation protein Lar DUF4397 PF14344.6 gi|257387380|ref|YP_003177153.1| - 3.1e-39 134.5 19.7 6.2e-26 91.6 5.7 3.2 2 2 2 4 4 4 3 Domain of unknown function (DUF4397) AlgF PF11182.8 gi|257387380|ref|YP_003177153.1| - 2.2e-05 24.3 1.2 0.07 12.9 0.1 2.4 2 0 0 2 2 2 2 Alginate O-acetyl transferase AlgF TcfC PF16967.5 gi|257387380|ref|YP_003177153.1| - 0.0038 16.7 0.5 2.2 7.9 0.1 2.5 2 0 0 2 2 2 2 E-set like domain DUF4493 PF14900.6 gi|257387380|ref|YP_003177153.1| - 0.0051 16.7 8.2 0.2 11.5 1.1 2.5 1 1 1 2 2 2 2 Domain of unknown function (DUF4493) Hva1_TUDOR PF11160.8 gi|257387380|ref|YP_003177153.1| - 0.0082 16.3 0.1 6.5 7.0 0.0 2.7 2 0 0 2 2 2 2 Hypervirulence associated proteins TUDOR domain DUF4458 PF14660.6 gi|257387380|ref|YP_003177153.1| - 0.0098 16.1 0.0 2.2 8.5 0.0 2.6 2 0 0 2 2 2 1 Domain of unknown function (DUF4458) DUF5114 PF17141.4 gi|257387380|ref|YP_003177153.1| - 6.7 7.3 7.8 9 6.9 0.4 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF5114) CSD PF00313.22 gi|257387381|ref|YP_003177154.1| - 2.9e-19 68.7 0.3 3.2e-19 68.5 0.3 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain OB_RNB PF08206.11 gi|257387381|ref|YP_003177154.1| - 0.043 13.5 2.5 0.06 13.0 2.5 1.3 1 0 0 1 1 1 0 Ribonuclease B OB domain S1-like PF14444.6 gi|257387381|ref|YP_003177154.1| - 0.19 11.7 1.6 0.28 11.1 1.6 1.5 1 1 0 1 1 1 0 S1-like NAD_binding_4 PF07993.12 gi|257387382|ref|YP_003177155.1| - 7e-46 156.5 0.0 8.7e-46 156.2 0.0 1.1 1 0 0 1 1 1 1 Male sterility protein Epimerase PF01370.21 gi|257387382|ref|YP_003177155.1| - 1.1e-19 70.9 0.0 1.6e-19 70.3 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|257387382|ref|YP_003177155.1| - 2.1e-12 46.7 0.0 2.7e-12 46.3 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family GDP_Man_Dehyd PF16363.5 gi|257387382|ref|YP_003177155.1| - 1e-11 44.8 0.0 1.3e-11 44.5 0.0 1.1 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase NAD_binding_10 PF13460.6 gi|257387382|ref|YP_003177155.1| - 8.2e-09 35.6 0.6 2e-08 34.3 0.6 1.7 1 1 0 1 1 1 1 NAD(P)H-binding RmlD_sub_bind PF04321.17 gi|257387382|ref|YP_003177155.1| - 2e-07 30.4 0.1 2.5e-07 30.1 0.1 1.2 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|257387382|ref|YP_003177155.1| - 0.0019 17.4 0.0 0.003 16.7 0.0 1.2 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein KR PF08659.10 gi|257387382|ref|YP_003177155.1| - 0.0037 17.2 0.0 0.0076 16.2 0.0 1.7 1 1 0 1 1 1 1 KR domain Aldedh PF00171.22 gi|257387383|ref|YP_003177156.1| - 2.5e-142 474.7 0.0 2.9e-142 474.4 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.14 gi|257387383|ref|YP_003177156.1| - 0.033 13.2 0.0 0.051 12.6 0.0 1.2 1 0 0 1 1 1 0 Acyl-CoA reductase (LuxC) DS PF01916.17 gi|257387384|ref|YP_003177157.1| - 5.4e-98 327.8 0.0 6.2e-98 327.6 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase PRK PF00485.18 gi|257387385|ref|YP_003177158.1| - 5e-43 147.1 0.0 6.4e-43 146.8 0.0 1.1 1 0 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family AAA_17 PF13207.6 gi|257387385|ref|YP_003177158.1| - 0.00014 22.3 0.0 0.47 10.9 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_18 PF13238.6 gi|257387385|ref|YP_003177158.1| - 0.00028 21.4 0.0 0.00058 20.4 0.0 1.6 1 1 0 1 1 1 1 AAA domain dNK PF01712.19 gi|257387385|ref|YP_003177158.1| - 0.00042 20.2 0.0 0.17 11.7 0.0 2.1 2 0 0 2 2 2 2 Deoxynucleoside kinase ABC_tran PF00005.27 gi|257387385|ref|YP_003177158.1| - 0.00051 20.6 0.0 0.0013 19.3 0.0 1.5 1 1 0 1 1 1 1 ABC transporter Zeta_toxin PF06414.12 gi|257387385|ref|YP_003177158.1| - 0.0065 15.8 0.1 0.021 14.1 0.0 1.8 2 0 0 2 2 2 1 Zeta toxin Cytidylate_kin PF02224.18 gi|257387385|ref|YP_003177158.1| - 0.0075 16.0 0.0 0.61 9.8 0.0 2.1 2 0 0 2 2 2 1 Cytidylate kinase CoaE PF01121.20 gi|257387385|ref|YP_003177158.1| - 0.0097 15.6 0.5 0.15 11.7 0.1 2.1 2 0 0 2 2 2 1 Dephospho-CoA kinase AAA_33 PF13671.6 gi|257387385|ref|YP_003177158.1| - 0.011 15.9 0.0 0.019 15.1 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|257387385|ref|YP_003177158.1| - 0.013 15.8 0.0 0.025 14.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|257387385|ref|YP_003177158.1| - 0.041 13.6 0.0 0.071 12.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain CPT PF07931.12 gi|257387385|ref|YP_003177158.1| - 0.058 13.2 0.0 0.11 12.4 0.0 1.5 1 0 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein AAA_5 PF07728.14 gi|257387385|ref|YP_003177158.1| - 0.11 12.5 0.0 0.92 9.5 0.0 2.1 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) MukB PF04310.12 gi|257387385|ref|YP_003177158.1| - 0.17 11.7 0.0 0.33 10.7 0.0 1.4 1 0 0 1 1 1 0 MukB N-terminal AAA_29 PF13555.6 gi|257387385|ref|YP_003177158.1| - 0.2 11.5 0.1 0.35 10.7 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain DUF826 PF05696.11 gi|257387386|ref|YP_003177159.1| - 0.12 12.5 3.6 0.38 10.9 0.7 3.0 2 1 0 2 2 2 0 Protein of unknown function (DUF826) Acetyltransf_1 PF00583.25 gi|257387387|ref|YP_003177160.1| - 7.5e-11 42.3 0.2 1e-10 41.9 0.2 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|257387387|ref|YP_003177160.1| - 1.6e-10 41.3 0.1 2.8e-10 40.5 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|257387387|ref|YP_003177160.1| - 1.9e-08 34.3 0.0 2.6e-08 33.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|257387387|ref|YP_003177160.1| - 2.2e-05 25.1 0.1 2.7e-05 24.9 0.1 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|257387387|ref|YP_003177160.1| - 0.002 18.2 0.1 0.0047 17.0 0.1 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|257387387|ref|YP_003177160.1| - 0.0059 16.8 1.0 0.0059 16.8 1.0 1.4 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain HATPase_c PF02518.26 gi|257387388|ref|YP_003177161.1| - 1.6e-10 41.5 0.0 3.3e-10 40.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA_4TM PF16926.5 gi|257387388|ref|YP_003177161.1| - 1.6e-10 40.8 2.2 3.9e-10 39.6 2.2 1.6 1 0 0 1 1 1 1 Archaeal 4TM region of histidine kinase HATPase_c_2 PF13581.6 gi|257387388|ref|YP_003177161.1| - 9.2e-05 22.4 1.2 0.001 19.0 1.2 2.2 1 1 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.6 gi|257387388|ref|YP_003177161.1| - 0.016 15.1 0.0 0.033 14.1 0.0 1.5 1 1 0 1 1 1 0 GHKL domain HATPase_c_3 PF13589.6 gi|257387388|ref|YP_003177161.1| - 0.14 11.9 0.0 0.25 11.2 0.0 1.2 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LTV PF04180.14 gi|257387388|ref|YP_003177161.1| - 0.85 9.3 1.8 1.2 8.8 1.8 1.1 1 0 0 1 1 1 0 Low temperature viability protein MMR_HSR1_C PF08438.10 gi|257387389|ref|YP_003177162.1| - 1.6e-27 96.2 0.0 2.8e-27 95.5 0.0 1.4 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.23 gi|257387389|ref|YP_003177162.1| - 1.5e-21 76.6 0.0 1.8e-19 69.9 0.0 2.4 2 0 0 2 2 2 1 50S ribosome-binding GTPase TGS PF02824.21 gi|257387389|ref|YP_003177162.1| - 1.9e-09 37.4 0.0 4e-09 36.4 0.0 1.5 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.18 gi|257387389|ref|YP_003177162.1| - 4.5e-06 26.3 0.1 0.00027 20.5 0.0 2.8 4 0 0 4 4 4 1 Ferrous iron transport protein B ALF PF03752.13 gi|257387389|ref|YP_003177162.1| - 0.029 14.3 0.3 4.1 7.5 0.0 3.1 3 0 0 3 3 3 0 Short repeats of unknown function GTP_EFTU PF00009.27 gi|257387389|ref|YP_003177162.1| - 0.061 12.9 0.0 0.13 11.7 0.0 1.6 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain Dynamin_N PF00350.23 gi|257387389|ref|YP_003177162.1| - 0.067 13.2 0.2 1.3 9.0 0.0 2.7 3 0 0 3 3 3 0 Dynamin family HalOD1 PF18545.1 gi|257387390|ref|YP_003177163.1| - 3.9e-21 75.1 4.7 4.6e-21 74.9 4.7 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 DUF3081 PF11280.8 gi|257387390|ref|YP_003177163.1| - 0.043 13.7 0.1 0.049 13.5 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3081) BAT PF15915.5 gi|257387391|ref|YP_003177164.1| - 1.4e-29 103.0 11.8 2.3e-29 102.3 11.8 1.3 1 0 0 1 1 1 1 GAF and HTH_10 associated domain HTH_10 PF04967.12 gi|257387391|ref|YP_003177164.1| - 2.3e-14 52.9 0.0 3.6e-14 52.3 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain HTH_5 PF01022.20 gi|257387391|ref|YP_003177164.1| - 0.0014 18.5 0.0 0.0031 17.4 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Sigma70_r4_2 PF08281.12 gi|257387391|ref|YP_003177164.1| - 0.0038 16.9 0.0 0.25 11.0 0.0 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_1 PF00126.27 gi|257387391|ref|YP_003177164.1| - 0.052 13.5 0.0 0.12 12.3 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family PALP PF00291.25 gi|257387392|ref|YP_003177165.1| - 4.7e-59 200.2 0.6 5.5e-59 200.0 0.6 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ADH_zinc_N PF00107.26 gi|257387392|ref|YP_003177165.1| - 1.8e-05 24.8 1.9 0.00013 21.9 0.9 2.5 2 1 0 2 2 2 1 Zinc-binding dehydrogenase SRAP PF02586.14 gi|257387394|ref|YP_003177167.1| - 3.7e-67 226.1 0.0 4.2e-67 225.9 0.0 1.0 1 0 0 1 1 1 1 SOS response associated peptidase (SRAP) HTH_31 PF13560.6 gi|257387395|ref|YP_003177168.1| - 0.057 13.8 1.0 1.1 9.6 0.1 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain Saccharop_dh_N PF04455.12 gi|257387397|ref|YP_003177170.1| - 5.9e-38 129.3 0.0 1.5e-37 128.0 0.0 1.7 1 0 0 1 1 1 1 LOR/SDH bifunctional enzyme conserved region TPP_enzyme_M PF00205.22 gi|257387397|ref|YP_003177170.1| - 5.6e-05 22.9 0.1 0.014 15.1 0.0 2.3 2 0 0 2 2 2 2 Thiamine pyrophosphate enzyme, central domain DS PF01916.17 gi|257387397|ref|YP_003177170.1| - 0.0054 16.0 0.0 0.028 13.6 0.0 2.0 1 1 1 2 2 2 1 Deoxyhypusine synthase DUF4247 PF14042.6 gi|257387397|ref|YP_003177170.1| - 0.075 13.7 0.0 0.15 12.8 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4247) Usp PF00582.26 gi|257387398|ref|YP_003177171.1| - 2e-26 93.2 1.2 2.3e-26 93.0 1.2 1.0 1 0 0 1 1 1 1 Universal stress protein family LID PF17916.1 gi|257387398|ref|YP_003177171.1| - 0.038 13.6 0.2 0.082 12.6 0.2 1.5 1 0 0 1 1 1 0 LIM interaction domain (LID) ASD2 PF08687.11 gi|257387399|ref|YP_003177172.1| - 0.063 12.8 0.0 0.093 12.3 0.0 1.3 1 0 0 1 1 1 0 Apx/Shroom domain ASD2 L27 PF02828.16 gi|257387399|ref|YP_003177172.1| - 0.9 9.3 5.3 6.3 6.6 0.6 2.5 1 1 1 2 2 2 0 L27 domain Glyoxalase PF00903.25 gi|257387400|ref|YP_003177173.1| - 4.4e-16 59.3 0.2 5e-16 59.1 0.2 1.0 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|257387400|ref|YP_003177173.1| - 1.5e-13 50.9 0.2 1.8e-13 50.7 0.2 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_2 PF12681.7 gi|257387400|ref|YP_003177173.1| - 1.3e-07 31.6 0.0 1.6e-06 28.0 0.0 1.9 1 1 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_3 PF13468.6 gi|257387400|ref|YP_003177173.1| - 8.7e-05 22.7 0.5 0.00013 22.1 0.5 1.2 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase_6 PF18029.1 gi|257387400|ref|YP_003177173.1| - 0.00075 20.3 1.4 0.0015 19.3 1.4 1.6 1 1 0 1 1 1 1 Glyoxalase-like domain RseC_MucC PF04246.12 gi|257387401|ref|YP_003177174.1| - 0.018 15.0 1.1 0.018 15.0 1.1 2.2 2 0 0 2 2 2 0 Positive regulator of sigma(E), RseC/MucC TM_helix PF05552.12 gi|257387401|ref|YP_003177174.1| - 0.037 14.0 1.4 0.037 14.0 1.4 2.6 3 1 0 3 3 3 0 Conserved TM helix TctB PF07331.11 gi|257387401|ref|YP_003177174.1| - 2.1 8.6 19.6 2.3 8.5 14.7 2.1 2 0 0 2 2 2 0 Tripartite tricarboxylate transporter TctB family ILVD_EDD PF00920.21 gi|257387402|ref|YP_003177175.1| - 9.5e-196 651.4 0.3 1.1e-195 651.2 0.3 1.0 1 0 0 1 1 1 1 Dehydratase family DGC PF08859.11 gi|257387402|ref|YP_003177175.1| - 0.1 12.7 0.3 1.6 8.9 0.0 2.4 2 0 0 2 2 2 0 DGC domain GHMP_kinases_N PF00288.26 gi|257387403|ref|YP_003177176.1| - 1e-06 28.9 2.3 1.2e-05 25.5 0.2 2.9 3 0 0 3 3 3 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|257387403|ref|YP_003177176.1| - 0.0061 16.9 0.1 0.014 15.8 0.1 1.5 1 0 0 1 1 1 1 GHMP kinases C terminal ATPase PF06745.13 gi|257387404|ref|YP_003177177.1| - 2.6e-08 33.5 0.2 0.00022 20.7 0.2 2.3 2 1 0 2 2 2 2 KaiC Rad51 PF08423.11 gi|257387404|ref|YP_003177177.1| - 0.0011 18.2 0.1 0.0073 15.6 0.0 2.2 3 0 0 3 3 3 1 Rad51 AAA_25 PF13481.6 gi|257387404|ref|YP_003177177.1| - 0.0038 16.8 0.3 0.054 13.1 0.0 2.1 2 0 0 2 2 2 1 AAA domain RHH_1 PF01402.21 gi|257387405|ref|YP_003177178.1| - 3.2e-05 23.7 0.1 3.2e-05 23.7 0.1 3.9 5 0 0 5 5 3 1 Ribbon-helix-helix protein, copG family FlaC_arch PF05377.11 gi|257387405|ref|YP_003177178.1| - 7.4e-05 23.1 5.2 0.0088 16.4 0.1 4.3 4 0 0 4 4 4 1 Flagella accessory protein C (FlaC) Baculo_PEP_C PF04513.12 gi|257387405|ref|YP_003177178.1| - 0.00034 20.7 2.7 0.58 10.2 0.0 3.1 2 1 1 3 3 3 2 Baculovirus polyhedron envelope protein, PEP, C terminus Laminin_II PF06009.12 gi|257387405|ref|YP_003177178.1| - 0.00047 20.2 12.1 0.0012 18.9 0.1 3.3 2 1 0 3 3 3 1 Laminin Domain II Spc7 PF08317.11 gi|257387405|ref|YP_003177178.1| - 0.00065 18.7 1.4 0.00065 18.7 1.4 2.2 1 1 1 2 2 2 1 Spc7 kinetochore protein ABC_tran_CTD PF16326.5 gi|257387405|ref|YP_003177178.1| - 0.00093 19.4 0.1 0.00093 19.4 0.1 3.8 3 1 1 4 4 4 1 ABC transporter C-terminal domain EzrA PF06160.12 gi|257387405|ref|YP_003177178.1| - 0.0026 16.0 0.7 0.0026 16.0 0.7 1.7 1 1 1 2 2 2 1 Septation ring formation regulator, EzrA DUF445 PF04286.12 gi|257387405|ref|YP_003177178.1| - 0.0033 17.3 9.4 0.0033 17.3 9.4 1.6 1 1 0 1 1 1 1 Protein of unknown function (DUF445) Zn-ribbon_8 PF09723.10 gi|257387405|ref|YP_003177178.1| - 0.012 15.7 1.7 0.033 14.3 1.7 1.7 1 0 0 1 1 1 0 Zinc ribbon domain UPF0184 PF03670.13 gi|257387405|ref|YP_003177178.1| - 0.023 15.1 0.5 0.023 15.1 0.5 3.4 3 1 0 3 3 3 0 Uncharacterised protein family (UPF0184) DLP_helical PF18709.1 gi|257387405|ref|YP_003177178.1| - 0.024 13.9 1.7 11 5.1 0.2 3.1 1 1 2 3 3 3 0 Dynamin-like helical domain Zn_Tnp_IS91 PF14319.6 gi|257387405|ref|YP_003177178.1| - 0.037 14.1 0.1 0.12 12.4 0.1 1.9 1 0 0 1 1 1 0 Transposase zinc-binding domain DUF2884 PF11101.8 gi|257387405|ref|YP_003177178.1| - 0.038 13.5 8.8 0.025 14.1 6.1 2.0 1 1 0 2 2 2 0 Protein of unknown function (DUF2884) Snapin_Pallidin PF14712.6 gi|257387405|ref|YP_003177178.1| - 0.047 14.1 0.5 9.4 6.7 0.0 3.4 3 1 0 3 3 3 0 Snapin/Pallidin XhlA PF10779.9 gi|257387405|ref|YP_003177178.1| - 0.066 13.4 1.3 0.066 13.4 1.3 3.4 2 1 0 3 3 2 0 Haemolysin XhlA zf-C3HC4_3 PF13920.6 gi|257387405|ref|YP_003177178.1| - 0.069 13.0 0.5 0.1 12.5 0.5 1.2 1 0 0 1 1 1 0 Zinc finger, C3HC4 type (RING finger) Occludin_ELL PF07303.13 gi|257387405|ref|YP_003177178.1| - 0.14 12.9 0.9 15 6.4 0.0 3.2 2 1 1 3 3 3 0 Occludin homology domain DUF668 PF05003.12 gi|257387405|ref|YP_003177178.1| - 0.17 12.4 0.8 18 5.9 0.1 2.8 1 1 1 2 2 2 0 Protein of unknown function (DUF668) SecA_SW PF07516.13 gi|257387405|ref|YP_003177178.1| - 0.2 11.7 4.8 0.41 10.7 4.8 1.6 1 1 0 1 1 1 0 SecA Wing and Scaffold domain DUF3837 PF12939.7 gi|257387405|ref|YP_003177178.1| - 0.3 11.5 2.9 0.39 11.1 0.9 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF3837) DUF2937 PF11157.8 gi|257387405|ref|YP_003177178.1| - 0.36 10.5 4.5 0.19 11.4 0.3 2.4 2 1 1 3 3 3 0 Protein of unknown function (DUF2937) COG2 PF06148.11 gi|257387405|ref|YP_003177178.1| - 0.37 10.9 10.7 1.7 8.7 0.1 3.6 1 1 2 3 3 3 0 COG (conserved oligomeric Golgi) complex component, COG2 KMP11 PF03037.16 gi|257387405|ref|YP_003177178.1| - 0.44 11.4 4.1 0.2 12.4 0.7 2.2 3 0 0 3 3 1 0 Kinetoplastid membrane protein 11 PIN_8 PF18476.1 gi|257387405|ref|YP_003177178.1| - 0.58 10.0 11.4 4.6 7.0 0.8 2.5 1 1 2 3 3 3 0 PIN like domain GerPC PF10737.9 gi|257387405|ref|YP_003177178.1| - 0.64 10.1 4.6 0.68 10.0 1.0 2.7 1 1 2 4 4 4 0 Spore germination protein GerPC DUF948 PF06103.11 gi|257387405|ref|YP_003177178.1| - 0.64 10.3 11.3 0.68 10.2 0.1 3.3 2 2 1 3 3 3 0 Bacterial protein of unknown function (DUF948) Prominin PF05478.11 gi|257387405|ref|YP_003177178.1| - 0.68 7.8 5.8 0.5 8.3 0.2 2.2 1 1 0 2 2 2 0 Prominin DUF1664 PF07889.12 gi|257387405|ref|YP_003177178.1| - 0.69 10.0 10.8 0.16 12.0 0.2 3.5 1 1 4 5 5 5 0 Protein of unknown function (DUF1664) DUF2924 PF11149.8 gi|257387405|ref|YP_003177178.1| - 0.77 10.1 3.4 0.62 10.5 0.2 2.4 2 1 0 3 3 2 0 Protein of unknown function (DUF2924) DUF2730 PF10805.8 gi|257387405|ref|YP_003177178.1| - 0.87 9.7 3.5 4.2 7.5 0.4 2.8 1 1 2 3 3 3 0 Protein of unknown function (DUF2730) Phasin PF05597.11 gi|257387405|ref|YP_003177178.1| - 1 9.4 19.5 0.16 12.0 4.3 3.5 1 1 2 3 3 3 0 Poly(hydroxyalcanoate) granule associated protein (phasin) FliG_C PF01706.16 gi|257387405|ref|YP_003177178.1| - 2 8.7 8.2 0.16 12.2 2.0 2.4 2 1 1 3 3 2 0 FliG C-terminal domain CCDC-167 PF15188.6 gi|257387405|ref|YP_003177178.1| - 2.4 8.6 8.5 12 6.3 2.2 3.6 1 1 2 3 3 3 0 Coiled-coil domain-containing protein 167 zf-ZPR1 PF03367.13 gi|257387405|ref|YP_003177178.1| - 2.8 7.8 15.3 1 9.2 0.5 3.8 2 2 1 3 3 3 0 ZPR1 zinc-finger domain Seryl_tRNA_N PF02403.22 gi|257387405|ref|YP_003177178.1| - 4.3 7.6 8.6 5.3 7.3 0.6 3.3 2 1 1 3 3 3 0 Seryl-tRNA synthetase N-terminal domain DUF4407 PF14362.6 gi|257387405|ref|YP_003177178.1| - 6.3 6.1 18.6 5.6 6.2 11.4 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) ThiP_synth PF10120.9 gi|257387407|ref|YP_003177180.1| - 3.3e-48 163.4 0.4 4.4e-48 163.0 0.4 1.2 1 0 0 1 1 1 1 Thiamine-phosphate synthase HTH_37 PF13744.6 gi|257387407|ref|YP_003177180.1| - 3.9e-05 23.5 0.0 8.2e-05 22.5 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.6 gi|257387407|ref|YP_003177180.1| - 0.00023 21.5 0.5 0.00023 21.5 0.5 2.9 3 1 0 3 3 2 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|257387407|ref|YP_003177180.1| - 0.00055 19.6 0.2 0.0036 17.1 0.0 2.3 2 0 0 2 2 2 1 Homeodomain-like domain Sigma70_r4 PF04545.16 gi|257387407|ref|YP_003177180.1| - 0.0081 15.7 0.1 0.032 13.8 0.0 2.0 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_3 PF01381.22 gi|257387407|ref|YP_003177180.1| - 0.0083 16.2 0.0 0.021 14.9 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix HTH_24 PF13412.6 gi|257387407|ref|YP_003177180.1| - 0.016 14.8 0.0 0.037 13.6 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding YdaS_antitoxin PF15943.5 gi|257387407|ref|YP_003177180.1| - 0.025 14.4 0.0 0.094 12.6 0.0 2.0 2 0 0 2 2 2 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT MarR_2 PF12802.7 gi|257387407|ref|YP_003177180.1| - 0.04 13.8 0.1 0.04 13.8 0.1 2.6 4 0 0 4 4 4 0 MarR family HTH_20 PF12840.7 gi|257387407|ref|YP_003177180.1| - 0.056 13.5 0.6 0.76 9.9 0.2 2.6 1 1 1 2 2 2 0 Helix-turn-helix domain HTH_Tnp_ISL3 PF13542.6 gi|257387407|ref|YP_003177180.1| - 0.1 12.0 0.8 0.29 10.6 0.1 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 P22_Cro PF14549.6 gi|257387407|ref|YP_003177180.1| - 0.14 12.0 0.1 0.37 10.7 0.1 1.6 1 0 0 1 1 1 0 DNA-binding transcriptional regulator Cro Nramp PF01566.18 gi|257387408|ref|YP_003177181.1| - 6.7e-61 206.2 34.0 6.7e-61 206.2 34.0 1.4 2 0 0 2 2 2 1 Natural resistance-associated macrophage protein AAA_16 PF13191.6 gi|257387409|ref|YP_003177182.1| - 0.0022 18.4 0.4 0.0029 18.0 0.4 1.4 1 1 0 1 1 1 1 AAA ATPase domain ATP_bind_1 PF03029.17 gi|257387409|ref|YP_003177182.1| - 0.093 12.5 0.0 0.13 12.0 0.0 1.2 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein TFIIS_C PF01096.18 gi|257387411|ref|YP_003177184.1| - 1.2e-16 60.3 2.5 1.2e-16 60.3 2.5 2.9 3 0 0 3 3 3 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.16 gi|257387411|ref|YP_003177184.1| - 1.4e-06 28.0 1.7 1.4e-06 28.0 1.7 3.1 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit zf-ribbon_3 PF13248.6 gi|257387411|ref|YP_003177184.1| - 5.3e-05 22.5 13.6 0.0008 18.7 1.0 3.3 3 0 0 3 3 3 2 zinc-ribbon domain DZR PF12773.7 gi|257387411|ref|YP_003177184.1| - 0.00045 20.2 11.3 0.00054 19.9 1.0 3.0 2 1 1 3 3 3 1 Double zinc ribbon OrfB_Zn_ribbon PF07282.11 gi|257387411|ref|YP_003177184.1| - 0.00058 19.7 11.1 0.021 14.7 2.0 2.7 2 1 0 2 2 2 2 Putative transposase DNA-binding domain DNA_RNApol_7kD PF03604.13 gi|257387411|ref|YP_003177184.1| - 0.0017 17.9 10.6 0.17 11.6 1.9 3.4 3 1 0 3 3 3 1 DNA directed RNA polymerase, 7 kDa subunit HypA PF01155.19 gi|257387411|ref|YP_003177184.1| - 0.0022 18.0 7.5 0.32 11.0 1.9 2.5 1 1 0 2 2 2 2 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TF_Zn_Ribbon PF08271.12 gi|257387411|ref|YP_003177184.1| - 0.0027 17.2 11.9 0.67 9.5 3.2 4.2 3 1 0 3 3 3 1 TFIIB zinc-binding Zn-ribbon_8 PF09723.10 gi|257387411|ref|YP_003177184.1| - 0.006 16.7 15.7 0.055 13.6 2.6 3.6 2 2 1 3 3 3 1 Zinc ribbon domain DUF2318 PF10080.9 gi|257387411|ref|YP_003177184.1| - 0.0085 16.2 8.9 0.031 14.4 1.5 3.0 2 1 1 3 3 3 1 Predicted membrane protein (DUF2318) Zn_Tnp_IS1595 PF12760.7 gi|257387411|ref|YP_003177184.1| - 0.0093 15.9 7.3 0.016 15.2 0.4 2.8 2 1 1 3 3 3 1 Transposase zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|257387411|ref|YP_003177184.1| - 0.017 14.8 11.7 3 7.7 0.1 4.3 4 0 0 4 4 4 0 zinc-ribbon domain zf_UBZ PF18439.1 gi|257387411|ref|YP_003177184.1| - 0.022 14.3 12.9 1.5 8.5 0.2 4.1 3 1 1 4 4 4 0 Ubiquitin-Binding Zinc Finger zinc-ribbons_6 PF07191.12 gi|257387411|ref|YP_003177184.1| - 0.032 14.2 9.1 0.039 13.9 1.3 2.4 2 1 0 2 2 2 0 zinc-ribbons Zn_ribbon_recom PF13408.6 gi|257387411|ref|YP_003177184.1| - 0.036 14.6 8.9 31 5.2 0.3 4.0 4 0 0 4 4 4 0 Recombinase zinc beta ribbon domain TackOD1 PF18551.1 gi|257387411|ref|YP_003177184.1| - 0.04 13.6 6.6 0.58 9.8 1.4 2.3 1 1 0 2 2 2 0 Thaumarchaeal output domain 1 C1_1 PF00130.22 gi|257387411|ref|YP_003177184.1| - 0.15 12.0 8.6 0.27 11.1 0.6 3.0 2 1 0 2 2 2 0 Phorbol esters/diacylglycerol binding domain (C1 domain) GFA PF04828.14 gi|257387411|ref|YP_003177184.1| - 0.21 12.0 11.0 1.4 9.3 0.1 3.8 1 1 3 4 4 4 0 Glutathione-dependent formaldehyde-activating enzyme Nudix_N_2 PF14803.6 gi|257387411|ref|YP_003177184.1| - 0.24 11.3 10.8 14 5.7 3.6 4.1 3 1 1 4 4 4 0 Nudix N-terminal zf-trcl PF13451.6 gi|257387411|ref|YP_003177184.1| - 0.28 11.1 14.4 2.9 7.8 0.1 4.4 5 0 0 5 5 4 0 Probable zinc-ribbon domain Lar_restr_allev PF14354.6 gi|257387411|ref|YP_003177184.1| - 0.29 11.6 14.7 0.57 10.6 0.1 3.9 1 1 2 3 3 3 0 Restriction alleviation protein Lar HNH_5 PF14279.6 gi|257387411|ref|YP_003177184.1| - 0.31 10.9 7.9 2.1 8.3 0.5 3.8 3 1 1 4 4 4 0 HNH endonuclease zf-ACC PF17848.1 gi|257387411|ref|YP_003177184.1| - 0.34 11.0 12.8 5.6 7.1 0.1 4.0 4 0 0 4 4 4 0 Acetyl-coA carboxylase zinc finger domain IBR PF01485.21 gi|257387411|ref|YP_003177184.1| - 0.58 10.4 10.3 11 6.4 5.2 3.0 1 1 1 2 2 2 0 IBR domain, a half RING-finger domain YhfH PF14149.6 gi|257387411|ref|YP_003177184.1| - 0.61 10.1 13.1 19 5.3 0.0 4.2 3 1 1 4 4 4 0 YhfH-like protein Prok-RING_1 PF14446.6 gi|257387411|ref|YP_003177184.1| - 0.74 9.8 13.0 0.091 12.7 3.0 3.1 4 0 0 4 4 3 0 Prokaryotic RING finger family 1 DUF702 PF05142.12 gi|257387411|ref|YP_003177184.1| - 0.77 10.2 6.2 3.4 8.1 0.3 2.8 3 0 0 3 3 3 0 Domain of unknown function (DUF702) GATA PF00320.27 gi|257387411|ref|YP_003177184.1| - 0.84 9.3 10.7 1.7 8.3 0.5 3.7 3 1 0 3 3 3 0 GATA zinc finger zf-C3HC4_3 PF13920.6 gi|257387411|ref|YP_003177184.1| - 0.87 9.5 5.5 10 6.1 1.1 3.2 3 1 0 3 3 3 0 Zinc finger, C3HC4 type (RING finger) A2L_zn_ribbon PF08792.10 gi|257387411|ref|YP_003177184.1| - 1.5 8.7 14.7 6.7 6.6 3.5 4.0 3 1 0 3 3 3 0 A2L zinc ribbon domain zinc_ribbon_15 PF17032.5 gi|257387411|ref|YP_003177184.1| - 2.9 8.7 10.4 18 6.2 2.7 3.1 1 1 1 2 2 2 0 zinc-ribbon family zinc_ribbon_4 PF13717.6 gi|257387411|ref|YP_003177184.1| - 3.1 7.8 11.5 10 6.2 0.4 3.6 3 1 0 3 3 3 0 zinc-ribbon domain PHD PF00628.29 gi|257387411|ref|YP_003177184.1| - 4.4 7.3 14.3 5.4 7.0 0.6 3.2 2 2 0 2 2 2 0 PHD-finger zf-HYPF PF07503.12 gi|257387411|ref|YP_003177184.1| - 7.1 6.5 12.1 57 3.6 0.1 4.1 3 1 0 3 3 3 0 HypF finger zinc_ribbon_5 PF13719.6 gi|257387411|ref|YP_003177184.1| - 8 6.3 11.3 12 5.8 1.3 3.6 3 1 1 4 4 4 0 zinc-ribbon domain zf-dskA_traR PF01258.17 gi|257387411|ref|YP_003177184.1| - 8.7 6.4 10.7 50 3.9 0.1 4.0 4 0 0 4 4 4 0 Prokaryotic dksA/traR C4-type zinc finger HisKA_7TM PF16927.5 gi|257387412|ref|YP_003177185.1| - 1.8e-15 57.6 18.7 2.6e-15 57.1 18.7 1.1 1 0 0 1 1 1 1 N-terminal 7TM region of histidine kinase HisKA PF00512.25 gi|257387412|ref|YP_003177185.1| - 0.00014 21.9 0.6 0.00047 20.1 0.1 2.2 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS PF00989.25 gi|257387412|ref|YP_003177185.1| - 0.00024 21.1 0.0 0.074 13.1 0.0 2.7 1 1 1 2 2 2 2 PAS fold PAS_8 PF13188.7 gi|257387412|ref|YP_003177185.1| - 0.00061 19.7 0.1 0.0025 17.8 0.0 2.1 2 0 0 2 2 2 1 PAS domain PAS_10 PF13596.6 gi|257387412|ref|YP_003177185.1| - 0.001 19.6 0.0 0.003 18.1 0.0 1.8 2 0 0 2 2 2 1 PAS domain PAS_4 PF08448.10 gi|257387412|ref|YP_003177185.1| - 0.0013 19.0 0.1 0.07 13.4 0.1 2.7 1 1 0 1 1 1 1 PAS fold CxxCxxCC PF03692.15 gi|257387413|ref|YP_003177186.1| - 3.2e-07 30.9 1.4 5.5e-07 30.2 1.4 1.5 1 1 0 1 1 1 1 Putative zinc- or iron-chelating domain Zip PF02535.22 gi|257387414|ref|YP_003177187.1| - 7.1e-08 32.0 12.5 2e-07 30.6 6.1 2.2 1 1 1 2 2 2 2 ZIP Zinc transporter Amino_oxidase PF01593.24 gi|257387415|ref|YP_003177188.1| - 1.7e-29 103.5 0.0 3.4e-29 102.4 0.0 1.5 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|257387415|ref|YP_003177188.1| - 6.7e-17 61.5 0.1 1.5e-16 60.4 0.1 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|257387415|ref|YP_003177188.1| - 1e-11 45.1 0.3 6.5e-08 32.5 0.0 2.4 2 1 0 2 2 2 2 FAD dependent oxidoreductase FAD_oxidored PF12831.7 gi|257387415|ref|YP_003177188.1| - 9.9e-08 31.7 0.0 1.6e-07 31.0 0.0 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|257387415|ref|YP_003177188.1| - 1.6e-07 31.8 1.7 1.1e-05 25.9 0.5 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_2 PF07992.14 gi|257387415|ref|YP_003177188.1| - 1.8e-07 30.7 1.5 7.7e-06 25.3 0.1 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|257387415|ref|YP_003177188.1| - 4.6e-07 29.3 2.2 9.6e-07 28.2 2.2 1.5 1 0 0 1 1 1 1 FAD binding domain HI0933_like PF03486.14 gi|257387415|ref|YP_003177188.1| - 9.1e-07 27.9 0.4 0.00033 19.5 0.7 2.2 2 0 0 2 2 2 2 HI0933-like protein Pyr_redox_3 PF13738.6 gi|257387415|ref|YP_003177188.1| - 6.7e-06 25.6 0.1 0.0026 17.1 0.0 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|257387415|ref|YP_003177188.1| - 5e-05 22.7 0.2 8.6e-05 21.9 0.2 1.3 1 0 0 1 1 1 1 FAD binding domain GIDA PF01134.22 gi|257387415|ref|YP_003177188.1| - 0.00058 19.0 0.9 0.001 18.2 0.9 1.4 1 0 0 1 1 1 1 Glucose inhibited division protein A AlaDh_PNT_C PF01262.21 gi|257387415|ref|YP_003177188.1| - 0.00071 18.9 0.1 0.0011 18.3 0.1 1.2 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Thi4 PF01946.17 gi|257387415|ref|YP_003177188.1| - 0.00093 18.5 0.2 0.0016 17.8 0.2 1.3 1 0 0 1 1 1 1 Thi4 family NAD_binding_7 PF13241.6 gi|257387415|ref|YP_003177188.1| - 0.0066 16.9 0.0 0.012 16.0 0.0 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding MCRA PF06100.11 gi|257387415|ref|YP_003177188.1| - 0.007 15.2 0.0 0.0097 14.7 0.0 1.2 1 0 0 1 1 1 1 MCRA family Trp_halogenase PF04820.14 gi|257387415|ref|YP_003177188.1| - 0.035 12.9 0.4 0.065 12.1 0.4 1.4 1 0 0 1 1 1 0 Tryptophan halogenase ApbA PF02558.16 gi|257387415|ref|YP_003177188.1| - 0.11 12.2 0.2 0.19 11.4 0.2 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.18 gi|257387415|ref|YP_003177188.1| - 0.16 11.9 0.3 0.24 11.3 0.3 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_9 PF13454.6 gi|257387415|ref|YP_003177188.1| - 0.58 10.1 2.9 2.6 8.0 0.1 2.5 3 0 0 3 3 3 0 FAD-NAD(P)-binding UbiA PF01040.18 gi|257387416|ref|YP_003177189.1| - 5.5e-27 94.7 13.9 5.5e-27 94.7 13.9 1.3 1 1 0 1 1 1 1 UbiA prenyltransferase family Caroten_synth PF04240.12 gi|257387417|ref|YP_003177190.1| - 2.4e-63 213.8 16.5 3.2e-63 213.4 16.5 1.1 1 0 0 1 1 1 1 Carotenoid biosynthesis protein DUF983 PF06170.12 gi|257387417|ref|YP_003177190.1| - 3.2 8.2 10.0 1 9.8 2.6 2.6 2 0 0 2 2 2 0 Protein of unknown function (DUF983) DUF58 PF01882.18 gi|257387419|ref|YP_003177192.1| - 4.6e-21 74.9 1.0 2.6e-20 72.5 0.1 2.5 2 1 0 2 2 2 1 Protein of unknown function DUF58 VWA_2 PF13519.6 gi|257387419|ref|YP_003177192.1| - 8.4e-07 29.6 0.1 1.9e-06 28.4 0.1 1.6 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA_CoxE PF05762.14 gi|257387419|ref|YP_003177192.1| - 1.8e-06 27.5 0.6 3.8e-06 26.4 0.6 1.5 1 1 0 1 1 1 1 VWA domain containing CoxE-like protein AAA_3 PF07726.11 gi|257387420|ref|YP_003177193.1| - 1.9e-61 205.7 0.4 3.2e-61 204.9 0.4 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|257387420|ref|YP_003177193.1| - 1e-19 70.1 4.4 2.1e-19 69.1 4.4 1.6 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|257387420|ref|YP_003177193.1| - 1.4e-11 44.6 0.0 2.5e-11 43.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) MCM PF00493.23 gi|257387420|ref|YP_003177193.1| - 5.6e-07 28.9 0.0 7.9e-07 28.4 0.0 1.2 1 0 0 1 1 1 1 MCM P-loop domain AAA PF00004.29 gi|257387420|ref|YP_003177193.1| - 8.3e-07 29.5 0.0 2.9e-06 27.8 0.0 1.9 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|257387420|ref|YP_003177193.1| - 0.00013 21.7 0.0 0.00081 19.1 0.0 2.0 1 1 0 1 1 1 1 Sigma-54 interaction domain RuvB_N PF05496.12 gi|257387420|ref|YP_003177193.1| - 0.00067 19.4 0.1 0.012 15.3 0.1 2.3 1 1 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain Mg_chelatase PF01078.21 gi|257387420|ref|YP_003177193.1| - 0.0092 15.4 0.0 0.24 10.7 0.0 2.2 2 0 0 2 2 2 1 Magnesium chelatase, subunit ChlI AAA_19 PF13245.6 gi|257387420|ref|YP_003177193.1| - 0.014 15.7 0.0 3.8 7.9 0.0 2.5 2 0 0 2 2 2 0 AAA domain AAA_2 PF07724.14 gi|257387420|ref|YP_003177193.1| - 0.093 12.8 0.0 0.26 11.4 0.0 1.8 2 0 0 2 2 2 0 AAA domain (Cdc48 subfamily) Phage_holin_3_1 PF05106.12 gi|257387421|ref|YP_003177194.1| - 0.056 13.9 0.1 0.13 12.8 0.1 1.5 1 0 0 1 1 1 0 Phage holin family (Lysis protein S) FlaC_arch PF05377.11 gi|257387422|ref|YP_003177195.1| - 1.5e-10 41.3 31.3 0.0026 18.1 4.6 5.1 3 1 1 5 5 5 3 Flagella accessory protein C (FlaC) DivIC PF04977.15 gi|257387422|ref|YP_003177195.1| - 1.8e-09 37.2 34.9 0.0034 17.1 1.7 5.4 1 1 5 6 6 6 3 Septum formation initiator DUF1664 PF07889.12 gi|257387422|ref|YP_003177195.1| - 8.9e-09 35.4 16.5 7.7e-06 26.0 6.0 2.5 1 1 1 2 2 2 2 Protein of unknown function (DUF1664) bZIP_1 PF00170.21 gi|257387422|ref|YP_003177195.1| - 9.9e-09 35.2 25.7 0.00013 22.0 3.8 5.2 1 1 5 6 6 6 2 bZIP transcription factor BLOC1_2 PF10046.9 gi|257387422|ref|YP_003177195.1| - 1.1e-08 35.2 26.0 0.00083 19.6 1.8 3.7 1 1 2 3 3 3 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 CENP-F_leu_zip PF10473.9 gi|257387422|ref|YP_003177195.1| - 1.7e-08 34.6 37.3 0.0002 21.4 15.0 3.1 1 1 2 3 3 3 3 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 HemX PF04375.14 gi|257387422|ref|YP_003177195.1| - 3.3e-08 33.2 20.5 4.2e-05 23.0 7.0 2.1 1 1 1 2 2 2 2 HemX, putative uroporphyrinogen-III C-methyltransferase ATG16 PF08614.11 gi|257387422|ref|YP_003177195.1| - 3.6e-08 33.9 55.6 2.8e-07 31.0 38.6 2.0 1 1 1 2 2 2 2 Autophagy protein 16 (ATG16) PspA_IM30 PF04012.12 gi|257387422|ref|YP_003177195.1| - 5.6e-08 32.6 24.8 0.00076 19.1 2.7 3.2 1 1 2 3 3 3 3 PspA/IM30 family Spc7 PF08317.11 gi|257387422|ref|YP_003177195.1| - 2.1e-07 30.2 34.6 0.00065 18.7 13.3 2.0 1 1 1 2 2 2 2 Spc7 kinetochore protein YabA PF06156.13 gi|257387422|ref|YP_003177195.1| - 2.2e-07 31.4 23.2 0.00039 21.0 4.3 3.8 1 1 2 3 3 3 2 Initiation control protein YabA ZapB PF06005.12 gi|257387422|ref|YP_003177195.1| - 4.7e-07 30.2 39.5 0.0035 17.7 5.3 4.0 1 1 3 4 4 3 3 Cell division protein ZapB ADIP PF11559.8 gi|257387422|ref|YP_003177195.1| - 5e-07 29.9 31.3 7.8e-05 22.8 10.8 2.4 1 1 1 2 2 2 2 Afadin- and alpha -actinin-Binding AAA_13 PF13166.6 gi|257387422|ref|YP_003177195.1| - 1.2e-06 27.5 16.4 1.7e-06 27.1 16.4 1.1 1 0 0 1 1 1 1 AAA domain GAS PF13851.6 gi|257387422|ref|YP_003177195.1| - 1.8e-06 27.5 28.6 0.0016 17.8 14.0 2.5 1 1 2 3 3 3 3 Growth-arrest specific micro-tubule binding TPR_MLP1_2 PF07926.12 gi|257387422|ref|YP_003177195.1| - 2e-06 27.9 37.7 0.0019 18.3 25.0 3.6 1 1 1 2 2 2 2 TPR/MLP1/MLP2-like protein TMF_DNA_bd PF12329.8 gi|257387422|ref|YP_003177195.1| - 3e-06 27.1 36.4 0.0016 18.4 12.8 3.7 1 1 2 3 3 3 2 TATA element modulatory factor 1 DNA binding TolA_bind_tri PF16331.5 gi|257387422|ref|YP_003177195.1| - 4.4e-06 26.7 35.4 0.00032 20.7 3.9 4.1 1 1 3 4 4 4 2 TolA binding protein trimerisation Mod_r PF07200.13 gi|257387422|ref|YP_003177195.1| - 4.6e-06 26.8 28.9 0.00038 20.6 7.8 3.0 1 1 0 2 2 2 1 Modifier of rudimentary (Mod(r)) protein ERM PF00769.19 gi|257387422|ref|YP_003177195.1| - 5.8e-06 26.3 32.8 1e-05 25.5 20.4 2.0 1 1 1 2 2 2 1 Ezrin/radixin/moesin family Atg14 PF10186.9 gi|257387422|ref|YP_003177195.1| - 6.3e-06 25.5 22.5 0.00078 18.6 6.9 2.0 1 1 1 2 2 2 2 Vacuolar sorting 38 and autophagy-related subunit 14 Tropomyosin_1 PF12718.7 gi|257387422|ref|YP_003177195.1| - 6.7e-06 26.3 39.6 0.0019 18.4 22.5 2.8 1 1 2 3 3 3 3 Tropomyosin like bZIP_2 PF07716.15 gi|257387422|ref|YP_003177195.1| - 1e-05 25.5 33.7 0.034 14.2 1.0 6.2 1 1 6 7 7 6 3 Basic region leucine zipper DUF3450 PF11932.8 gi|257387422|ref|YP_003177195.1| - 1.1e-05 24.9 27.7 0.0013 18.1 10.0 2.5 1 1 1 2 2 2 2 Protein of unknown function (DUF3450) MAD PF05557.13 gi|257387422|ref|YP_003177195.1| - 1.4e-05 23.7 27.2 1.9e-05 23.2 27.2 1.2 1 0 0 1 1 1 1 Mitotic checkpoint protein Uso1_p115_C PF04871.13 gi|257387422|ref|YP_003177195.1| - 1.6e-05 25.3 30.1 0.011 16.2 7.7 3.1 1 1 1 2 2 2 2 Uso1 / p115 like vesicle tethering protein, C terminal region Ax_dynein_light PF10211.9 gi|257387422|ref|YP_003177195.1| - 1.8e-05 24.8 26.2 0.018 15.0 4.8 3.2 1 1 2 3 3 3 2 Axonemal dynein light chain TMF_TATA_bd PF12325.8 gi|257387422|ref|YP_003177195.1| - 2.2e-05 24.6 34.0 0.011 16.0 11.6 3.8 1 1 2 3 3 3 2 TATA element modulatory factor 1 TATA binding DUF3584 PF12128.8 gi|257387422|ref|YP_003177195.1| - 2.5e-05 22.0 22.9 3.5e-05 21.6 22.9 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) CENP-H PF05837.12 gi|257387422|ref|YP_003177195.1| - 2.9e-05 24.4 29.6 0.00017 22.0 4.2 3.2 1 1 2 3 3 3 1 Centromere protein H (CENP-H) DUF4201 PF13870.6 gi|257387422|ref|YP_003177195.1| - 3e-05 23.8 20.2 5e-05 23.1 13.1 2.8 1 1 2 3 3 3 2 Domain of unknown function (DUF4201) KASH_CCD PF14662.6 gi|257387422|ref|YP_003177195.1| - 3.5e-05 23.7 32.4 0.00019 21.3 13.0 2.1 1 1 1 2 2 2 2 Coiled-coil region of CCDC155 or KASH CALCOCO1 PF07888.11 gi|257387422|ref|YP_003177195.1| - 3.5e-05 22.9 34.2 5.2e-05 22.3 14.6 2.0 1 1 1 2 2 2 1 Calcium binding and coiled-coil domain (CALCOCO1) like Filament PF00038.21 gi|257387422|ref|YP_003177195.1| - 3.6e-05 23.5 30.2 0.003 17.2 11.8 2.5 1 1 1 2 2 2 2 Intermediate filament protein WXG100 PF06013.12 gi|257387422|ref|YP_003177195.1| - 3.7e-05 23.9 16.4 0.6 10.4 0.4 4.6 1 1 3 6 6 6 1 Proteins of 100 residues with WXG Golgin_A5 PF09787.9 gi|257387422|ref|YP_003177195.1| - 4.3e-05 23.1 33.2 0.0056 16.2 15.1 2.0 1 1 1 2 2 2 2 Golgin subfamily A member 5 Lebercilin PF15619.6 gi|257387422|ref|YP_003177195.1| - 4.4e-05 23.2 33.4 0.0047 16.6 21.1 2.4 1 1 1 2 2 2 2 Ciliary protein causing Leber congenital amaurosis disease UPF0242 PF06785.11 gi|257387422|ref|YP_003177195.1| - 5.6e-05 23.3 28.3 0.0014 18.8 14.7 2.2 1 1 1 2 2 2 1 Uncharacterised protein family (UPF0242) N-terminus FPP PF05911.11 gi|257387422|ref|YP_003177195.1| - 6.7e-05 21.3 30.5 0.00059 18.2 30.5 1.9 1 1 0 1 1 1 1 Filament-like plant protein, long coiled-coil MscS_porin PF12795.7 gi|257387422|ref|YP_003177195.1| - 7.2e-05 22.4 38.4 0.00037 20.1 37.1 2.1 1 1 1 2 2 2 2 Mechanosensitive ion channel porin domain Laminin_II PF06009.12 gi|257387422|ref|YP_003177195.1| - 9.1e-05 22.5 20.6 0.0012 18.8 5.9 2.6 1 1 2 3 3 3 3 Laminin Domain II Fez1 PF06818.15 gi|257387422|ref|YP_003177195.1| - 9.1e-05 23.0 27.8 0.027 14.9 10.3 2.4 1 1 1 2 2 2 2 Fez1 APG6_N PF17675.1 gi|257387422|ref|YP_003177195.1| - 9.2e-05 23.0 41.3 0.0026 18.3 23.2 2.6 1 1 1 2 2 2 1 Apg6 coiled-coil region SlyX PF04102.12 gi|257387422|ref|YP_003177195.1| - 0.00011 22.8 32.8 0.021 15.4 10.9 4.1 2 1 2 4 4 4 2 SlyX DUF4407 PF14362.6 gi|257387422|ref|YP_003177195.1| - 0.00012 21.6 26.7 0.03 13.7 17.3 2.2 1 1 1 2 2 2 2 Domain of unknown function (DUF4407) DUF5082 PF16888.5 gi|257387422|ref|YP_003177195.1| - 0.00013 22.2 22.4 0.006 16.9 2.1 3.9 1 1 0 2 2 2 1 Domain of unknown function (DUF5082) TACC_C PF05010.14 gi|257387422|ref|YP_003177195.1| - 0.00016 21.5 22.4 0.0016 18.3 11.5 2.1 1 1 0 1 1 1 1 Transforming acidic coiled-coil-containing protein (TACC), C-terminal Tropomyosin PF00261.20 gi|257387422|ref|YP_003177195.1| - 0.00017 21.0 32.6 0.00029 20.3 32.5 1.5 1 1 0 1 1 1 1 Tropomyosin BST2 PF16716.5 gi|257387422|ref|YP_003177195.1| - 0.00019 22.0 27.1 0.013 16.1 6.5 4.4 1 1 3 4 4 4 2 Bone marrow stromal antigen 2 NPV_P10 PF05531.12 gi|257387422|ref|YP_003177195.1| - 0.00019 21.8 21.7 0.49 10.9 7.9 4.2 1 1 2 3 3 3 1 Nucleopolyhedrovirus P10 protein DUF4200 PF13863.6 gi|257387422|ref|YP_003177195.1| - 0.00022 21.6 25.6 0.012 16.0 8.7 2.9 1 1 2 3 3 3 2 Domain of unknown function (DUF4200) EzrA PF06160.12 gi|257387422|ref|YP_003177195.1| - 0.00025 19.4 23.8 0.00064 18.0 23.7 1.5 1 1 0 1 1 1 1 Septation ring formation regulator, EzrA HMMR_N PF15905.5 gi|257387422|ref|YP_003177195.1| - 0.00029 20.4 29.8 0.00034 20.2 20.5 2.0 1 1 1 2 2 2 1 Hyaluronan mediated motility receptor N-terminal Spc24 PF08286.11 gi|257387422|ref|YP_003177195.1| - 0.00029 21.0 37.3 0.054 13.7 4.8 4.2 1 1 3 4 4 4 2 Spc24 subunit of Ndc80 DUF2730 PF10805.8 gi|257387422|ref|YP_003177195.1| - 0.0003 20.8 17.6 0.57 10.3 2.2 3.6 1 1 4 5 5 5 1 Protein of unknown function (DUF2730) HrpB7 PF09486.10 gi|257387422|ref|YP_003177195.1| - 0.00031 21.2 26.7 0.011 16.1 15.5 2.5 1 1 1 2 2 2 1 Bacterial type III secretion protein (HrpB7) Prefoldin_2 PF01920.20 gi|257387422|ref|YP_003177195.1| - 0.00031 20.6 31.2 0.0045 16.9 5.2 4.4 1 1 3 4 4 4 1 Prefoldin subunit AIP3 PF03915.13 gi|257387422|ref|YP_003177195.1| - 0.00033 19.9 16.3 0.00042 19.5 16.3 1.1 1 0 0 1 1 1 1 Actin interacting protein 3 DUF4618 PF15397.6 gi|257387422|ref|YP_003177195.1| - 0.00035 20.1 22.5 0.052 13.0 2.2 3.1 1 1 1 2 2 2 1 Domain of unknown function (DUF4618) FliD_C PF07195.12 gi|257387422|ref|YP_003177195.1| - 0.00045 19.7 12.9 0.026 13.9 1.7 2.9 1 1 0 2 2 2 2 Flagellar hook-associated protein 2 C-terminus Prominin PF05478.11 gi|257387422|ref|YP_003177195.1| - 0.00045 18.3 7.4 0.00045 18.3 7.4 2.5 1 1 1 2 2 2 1 Prominin DUF2968 PF11180.8 gi|257387422|ref|YP_003177195.1| - 0.00047 19.8 26.7 0.01 15.4 10.5 3.1 1 1 2 3 3 3 1 Protein of unknown function (DUF2968) Laminin_I PF06008.14 gi|257387422|ref|YP_003177195.1| - 0.00057 19.7 13.7 0.00057 19.7 13.7 2.4 1 1 0 2 2 2 1 Laminin Domain I Leu_zip PF15294.6 gi|257387422|ref|YP_003177195.1| - 0.00059 19.4 25.1 0.0037 16.8 8.5 2.0 1 1 1 2 2 2 1 Leucine zipper DUF948 PF06103.11 gi|257387422|ref|YP_003177195.1| - 0.0006 20.0 18.4 0.049 13.9 2.9 3.5 1 1 2 3 3 3 1 Bacterial protein of unknown function (DUF948) HAUS-augmin3 PF14932.6 gi|257387422|ref|YP_003177195.1| - 0.0006 19.5 28.2 0.002 17.8 9.3 2.3 1 1 1 2 2 2 1 HAUS augmin-like complex subunit 3 IFT57 PF10498.9 gi|257387422|ref|YP_003177195.1| - 0.00062 18.8 21.5 0.0017 17.4 19.0 2.0 1 1 1 2 2 2 2 Intra-flagellar transport protein 57 DUF2353 PF09789.9 gi|257387422|ref|YP_003177195.1| - 0.00066 19.1 9.6 0.00066 19.1 9.6 2.3 1 1 1 2 2 2 1 Uncharacterized coiled-coil protein (DUF2353) XhlA PF10779.9 gi|257387422|ref|YP_003177195.1| - 0.00071 19.7 29.0 0.1 12.8 2.7 4.4 1 1 6 7 7 6 2 Haemolysin XhlA DUF3552 PF12072.8 gi|257387422|ref|YP_003177195.1| - 0.00072 19.0 15.1 0.00072 19.0 15.1 2.6 1 1 1 2 2 2 1 Domain of unknown function (DUF3552) DUF2205 PF10224.9 gi|257387422|ref|YP_003177195.1| - 0.00081 19.3 5.2 0.00081 19.3 5.2 3.7 1 1 2 3 3 3 1 Short coiled-coil protein TMPIT PF07851.13 gi|257387422|ref|YP_003177195.1| - 0.00085 18.7 18.5 0.034 13.4 4.7 2.1 1 1 1 2 2 2 2 TMPIT-like protein Phage_GP20 PF06810.11 gi|257387422|ref|YP_003177195.1| - 0.00087 19.1 27.0 0.0038 17.0 7.6 3.3 1 1 2 3 3 3 1 Phage minor structural protein GP20 LPP PF04728.13 gi|257387422|ref|YP_003177195.1| - 0.001 19.4 18.4 0.086 13.2 0.9 4.9 3 1 3 6 6 6 1 Lipoprotein leucine-zipper DUF812 PF05667.11 gi|257387422|ref|YP_003177195.1| - 0.0012 17.8 29.5 0.032 13.2 10.2 2.3 1 1 1 2 2 2 1 Protein of unknown function (DUF812) DUF724 PF05266.14 gi|257387422|ref|YP_003177195.1| - 0.0013 18.6 20.5 0.081 12.7 4.9 2.8 1 1 2 3 3 3 2 Protein of unknown function (DUF724) HOOK PF05622.12 gi|257387422|ref|YP_003177195.1| - 0.0013 16.9 31.5 0.071 11.2 4.1 2.4 1 1 1 2 2 2 2 HOOK protein DUF641 PF04859.12 gi|257387422|ref|YP_003177195.1| - 0.0014 19.0 21.2 0.28 11.5 4.7 3.2 1 1 2 3 3 3 1 Plant protein of unknown function (DUF641) ABC_tran_CTD PF16326.5 gi|257387422|ref|YP_003177195.1| - 0.0014 18.8 36.5 0.042 14.1 13.4 4.3 2 2 2 4 4 4 3 ABC transporter C-terminal domain Fib_alpha PF08702.10 gi|257387422|ref|YP_003177195.1| - 0.0016 18.7 19.8 0.0069 16.6 7.4 2.4 1 1 1 2 2 2 2 Fibrinogen alpha/beta chain family HSBP1 PF06825.12 gi|257387422|ref|YP_003177195.1| - 0.0016 18.3 14.4 0.71 9.8 0.4 4.7 3 2 1 4 4 4 1 Heat shock factor binding protein 1 Myosin_tail_1 PF01576.19 gi|257387422|ref|YP_003177195.1| - 0.0019 16.2 36.6 0.059 11.2 27.4 1.8 1 1 0 1 1 1 1 Myosin tail Prefoldin PF02996.17 gi|257387422|ref|YP_003177195.1| - 0.0019 18.1 26.7 0.027 14.4 4.4 5.0 1 1 5 6 6 6 2 Prefoldin subunit Swi5 PF07061.11 gi|257387422|ref|YP_003177195.1| - 0.0019 18.2 26.4 0.42 10.7 1.8 4.6 1 1 3 4 4 4 1 Swi5 Wtap PF17098.5 gi|257387422|ref|YP_003177195.1| - 0.002 18.1 30.2 0.0091 15.9 3.0 3.9 1 1 3 4 4 4 2 WTAP/Mum2p family BRE1 PF08647.11 gi|257387422|ref|YP_003177195.1| - 0.002 18.1 6.4 0.002 18.1 6.4 2.7 1 1 2 3 3 3 1 BRE1 E3 ubiquitin ligase Jnk-SapK_ap_N PF09744.9 gi|257387422|ref|YP_003177195.1| - 0.0021 18.3 36.3 0.014 15.6 14.1 2.7 1 1 2 3 3 3 1 JNK_SAPK-associated protein-1 DUF16 PF01519.16 gi|257387422|ref|YP_003177195.1| - 0.0023 18.4 20.0 0.19 12.2 5.3 3.1 1 1 2 3 3 3 2 Protein of unknown function DUF16 Tektin PF03148.14 gi|257387422|ref|YP_003177195.1| - 0.0023 16.7 29.4 0.021 13.6 9.8 2.7 1 1 1 2 2 2 1 Tektin family Lectin_N PF03954.14 gi|257387422|ref|YP_003177195.1| - 0.0026 17.5 21.2 0.18 11.6 10.0 3.3 1 1 2 3 3 3 1 Hepatic lectin, N-terminal domain Sec2p PF06428.11 gi|257387422|ref|YP_003177195.1| - 0.0028 17.6 30.8 0.14 12.1 3.2 4.1 2 2 1 3 3 3 1 GDP/GTP exchange factor Sec2p COG2 PF06148.11 gi|257387422|ref|YP_003177195.1| - 0.0032 17.5 21.4 0.39 10.8 5.8 3.6 1 1 2 3 3 3 2 COG (conserved oligomeric Golgi) complex component, COG2 FlxA PF14282.6 gi|257387422|ref|YP_003177195.1| - 0.0034 17.3 6.7 0.0034 17.3 6.7 3.1 1 1 1 2 2 2 1 FlxA-like protein PI3K_P85_iSH2 PF16454.5 gi|257387422|ref|YP_003177195.1| - 0.0036 16.9 14.8 0.0036 16.9 14.8 2.6 1 1 1 2 2 2 1 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain FliJ PF02050.16 gi|257387422|ref|YP_003177195.1| - 0.0037 17.5 21.1 0.077 13.2 3.9 2.8 1 1 2 3 3 3 2 Flagellar FliJ protein Syntaxin-6_N PF09177.11 gi|257387422|ref|YP_003177195.1| - 0.0037 17.8 30.5 0.65 10.6 11.8 3.7 1 1 1 2 2 2 1 Syntaxin 6, N-terminal Cep57_CLD_2 PF14197.6 gi|257387422|ref|YP_003177195.1| - 0.004 17.2 17.0 0.004 17.2 17.0 3.9 1 1 1 2 2 1 1 Centrosome localisation domain of PPC89 TSC22 PF01166.18 gi|257387422|ref|YP_003177195.1| - 0.0043 17.3 28.3 0.74 10.2 5.3 4.6 2 2 2 4 4 3 1 TSC-22/dip/bun family Fzo_mitofusin PF04799.13 gi|257387422|ref|YP_003177195.1| - 0.0054 16.3 20.1 0.041 13.4 2.3 3.2 1 1 2 3 3 3 1 fzo-like conserved region DHR10 PF18595.1 gi|257387422|ref|YP_003177195.1| - 0.0056 16.7 38.0 0.078 13.0 7.1 3.7 1 1 1 3 3 3 1 Designed helical repeat protein 10 domain RmuC PF02646.16 gi|257387422|ref|YP_003177195.1| - 0.0063 15.7 17.3 0.15 11.2 0.6 3.1 1 1 2 3 3 3 1 RmuC family JIP_LZII PF16471.5 gi|257387422|ref|YP_003177195.1| - 0.0067 16.6 35.4 0.043 14.0 12.4 4.2 1 1 3 4 4 4 1 JNK-interacting protein leucine zipper II CLZ PF16526.5 gi|257387422|ref|YP_003177195.1| - 0.0067 16.8 28.2 0.47 10.8 7.3 4.1 1 1 3 4 4 4 1 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Snapin_Pallidin PF14712.6 gi|257387422|ref|YP_003177195.1| - 0.0071 16.8 27.2 3 8.3 0.6 4.1 1 1 1 3 3 3 0 Snapin/Pallidin Shugoshin_N PF07558.11 gi|257387422|ref|YP_003177195.1| - 0.0082 16.0 25.0 0.51 10.3 0.3 4.7 4 1 1 5 5 4 1 Shugoshin N-terminal coiled-coil region Seryl_tRNA_N PF02403.22 gi|257387422|ref|YP_003177195.1| - 0.0095 16.2 24.2 3 8.1 17.4 3.0 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain COG5 PF10392.9 gi|257387422|ref|YP_003177195.1| - 0.011 15.9 11.8 0.22 11.7 0.7 2.8 1 1 2 3 3 3 0 Golgi transport complex subunit 5 DUF4795 PF16043.5 gi|257387422|ref|YP_003177195.1| - 0.011 15.4 22.5 0.013 15.2 9.2 2.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4795) DUF4527 PF15030.6 gi|257387422|ref|YP_003177195.1| - 0.011 15.2 3.3 0.011 15.2 3.3 2.1 1 1 1 2 2 1 0 Protein of unknown function (DUF4527) Cnn_1N PF07989.11 gi|257387422|ref|YP_003177195.1| - 0.013 15.7 31.8 0.3 11.3 9.0 4.4 1 1 3 4 4 4 0 Centrosomin N-terminal motif 1 Rab5-bind PF09311.11 gi|257387422|ref|YP_003177195.1| - 0.013 14.9 27.9 0.26 10.6 10.5 2.8 1 1 1 2 2 2 0 Rabaptin-like protein SKA1 PF07160.12 gi|257387422|ref|YP_003177195.1| - 0.016 15.0 15.0 0.032 14.1 1.7 2.7 1 1 2 3 3 3 0 Spindle and kinetochore-associated protein 1 DUF4472 PF14739.6 gi|257387422|ref|YP_003177195.1| - 0.017 15.8 26.5 0.52 11.1 2.0 3.3 1 1 2 3 3 3 0 Domain of unknown function (DUF4472) YscO PF07321.12 gi|257387422|ref|YP_003177195.1| - 0.018 15.0 32.7 0.76 9.7 3.1 4.0 1 1 2 3 3 3 0 Type III secretion protein YscO DUF4763 PF15960.5 gi|257387422|ref|YP_003177195.1| - 0.02 14.2 21.5 0.047 13.0 9.6 2.8 1 1 1 2 2 2 0 Domain of unknown function (DUF4763) TssO PF17561.2 gi|257387422|ref|YP_003177195.1| - 0.02 15.0 4.6 4.3 7.4 1.6 2.9 1 1 2 3 3 3 0 Type VI secretion system, TssO Exonuc_VII_L PF02601.15 gi|257387422|ref|YP_003177195.1| - 0.021 14.4 19.5 0.19 11.2 19.5 1.9 1 1 0 1 1 1 0 Exonuclease VII, large subunit Taxilin PF09728.9 gi|257387422|ref|YP_003177195.1| - 0.021 14.0 25.4 0.019 14.1 18.6 2.3 1 1 1 2 2 2 0 Myosin-like coiled-coil protein Bacillus_HBL PF05791.11 gi|257387422|ref|YP_003177195.1| - 0.022 14.6 14.5 0.29 10.9 1.1 2.7 1 1 2 3 3 3 0 Bacillus haemolytic enterotoxin (HBL) DASH_Hsk3 PF08227.11 gi|257387422|ref|YP_003177195.1| - 0.022 15.1 18.1 0.23 11.8 0.4 4.9 3 2 1 5 5 4 0 DASH complex subunit Hsk3 like DUF4094 PF13334.6 gi|257387422|ref|YP_003177195.1| - 0.024 15.0 4.8 0.024 15.0 4.8 2.9 1 1 2 3 3 2 0 Domain of unknown function (DUF4094) Macoilin PF09726.9 gi|257387422|ref|YP_003177195.1| - 0.028 13.0 26.9 0.41 9.1 26.9 1.9 1 1 0 1 1 1 0 Macoilin family CdvA PF18822.1 gi|257387422|ref|YP_003177195.1| - 0.031 14.1 22.5 0.65 9.8 1.4 3.5 1 1 2 3 3 3 0 CdvA-like coiled-coil domain OmpH PF03938.14 gi|257387422|ref|YP_003177195.1| - 0.032 14.6 25.6 0.12 12.7 6.7 2.9 1 1 1 2 2 2 0 Outer membrane protein (OmpH-like) Spectrin PF00435.21 gi|257387422|ref|YP_003177195.1| - 0.033 14.7 23.0 0.05 14.1 12.9 3.2 1 1 1 2 2 2 0 Spectrin repeat Tho2 PF11262.8 gi|257387422|ref|YP_003177195.1| - 0.034 13.4 17.4 0.17 11.1 4.8 2.1 2 0 0 2 2 2 0 Transcription factor/nuclear export subunit protein 2 Sipho_Gp157 PF05565.11 gi|257387422|ref|YP_003177195.1| - 0.036 14.1 18.9 0.77 9.8 5.3 2.4 1 1 0 2 2 2 0 Siphovirus Gp157 Dzip-like_N PF13815.6 gi|257387422|ref|YP_003177195.1| - 0.039 13.9 2.0 0.039 13.9 2.0 4.0 1 1 3 4 4 4 0 Iguana/Dzip1-like DAZ-interacting protein N-terminal DUF2203 PF09969.9 gi|257387422|ref|YP_003177195.1| - 0.044 14.5 17.3 0.31 11.8 5.7 2.7 1 1 1 2 2 2 0 Uncharacterized conserved protein (DUF2203) PRKG1_interact PF15898.5 gi|257387422|ref|YP_003177195.1| - 0.045 14.6 29.6 11 6.9 9.4 3.4 1 1 2 3 3 3 0 cGMP-dependent protein kinase interacting domain GIT_CC PF16559.5 gi|257387422|ref|YP_003177195.1| - 0.045 13.6 20.1 0.057 13.3 0.7 4.4 3 2 1 4 4 3 0 GIT coiled-coil Rho guanine nucleotide exchange factor PEARLI-4 PF05278.12 gi|257387422|ref|YP_003177195.1| - 0.046 13.3 16.6 0.14 11.7 2.6 3.0 1 1 2 3 3 3 0 Arabidopsis phospholipase-like protein (PEARLI 4) Csm1_N PF18504.1 gi|257387422|ref|YP_003177195.1| - 0.046 14.0 29.1 0.57 10.6 1.8 4.4 1 1 3 4 4 4 0 Csm1 N-terminal domain HALZ PF02183.18 gi|257387422|ref|YP_003177195.1| - 0.053 13.7 23.5 0.1 12.9 4.2 4.4 3 1 2 5 5 4 0 Homeobox associated leucine zipper DivIVA PF05103.13 gi|257387422|ref|YP_003177195.1| - 0.055 13.6 25.4 0.23 11.5 9.4 3.0 1 1 2 3 3 3 0 DivIVA protein SHE3 PF17078.5 gi|257387422|ref|YP_003177195.1| - 0.059 13.1 25.8 1.6 8.4 25.8 2.6 1 1 0 1 1 1 0 SWI5-dependent HO expression protein 3 CC2-LZ PF16516.5 gi|257387422|ref|YP_003177195.1| - 0.065 13.6 25.2 0.74 10.2 2.1 4.0 1 1 2 3 3 3 0 Leucine zipper of domain CC2 of NEMO, NF-kappa-B essential modulator DUF749 PF05370.11 gi|257387422|ref|YP_003177195.1| - 0.068 13.3 4.9 1.2 9.3 0.0 3.5 2 2 0 3 3 2 0 Domain of unknown function (DUF749) DUF1192 PF06698.11 gi|257387422|ref|YP_003177195.1| - 0.073 13.1 1.4 0.073 13.1 1.4 5.4 2 2 5 7 7 6 0 Protein of unknown function (DUF1192) MctB PF11382.8 gi|257387422|ref|YP_003177195.1| - 0.074 12.7 30.6 0.071 12.8 2.8 4.1 1 1 3 4 4 4 0 Copper transport outer membrane protein, MctB CCDC144C PF14915.6 gi|257387422|ref|YP_003177195.1| - 0.085 12.0 28.3 0.07 12.2 22.5 1.9 1 1 0 1 1 1 0 CCDC144C protein coiled-coil region DUF1043 PF06295.12 gi|257387422|ref|YP_003177195.1| - 0.092 12.7 15.9 1.4 8.9 6.1 2.6 1 1 2 3 3 3 0 Protein of unknown function (DUF1043) KxDL PF10241.9 gi|257387422|ref|YP_003177195.1| - 0.094 13.0 16.0 1.8 8.9 6.6 3.5 1 1 2 3 3 3 0 Uncharacterized conserved protein KLRAQ PF10205.9 gi|257387422|ref|YP_003177195.1| - 0.1 12.8 0.8 0.1 12.8 0.8 3.4 1 1 2 3 3 3 0 Predicted coiled-coil domain-containing protein THOC7 PF05615.13 gi|257387422|ref|YP_003177195.1| - 0.11 12.8 31.2 0.19 12.0 9.9 3.2 1 1 2 3 3 3 0 Tho complex subunit 7 WEMBL PF05701.11 gi|257387422|ref|YP_003177195.1| - 0.12 11.1 26.6 0.24 10.0 26.6 1.4 1 1 0 1 1 1 0 Weak chloroplast movement under blue light Cob_adeno_trans PF01923.18 gi|257387422|ref|YP_003177195.1| - 0.12 12.5 14.7 0.38 10.9 4.5 2.3 1 1 1 2 2 2 0 Cobalamin adenosyltransferase DUF4988 PF16378.5 gi|257387422|ref|YP_003177195.1| - 0.12 12.0 11.1 0.26 10.9 1.0 3.4 1 1 2 3 3 3 0 Domain of unknown function T3SSipB PF16535.5 gi|257387422|ref|YP_003177195.1| - 0.13 12.7 16.6 1 9.8 8.5 2.2 1 1 1 2 2 2 0 Type III cell invasion protein SipB FapA PF03961.13 gi|257387422|ref|YP_003177195.1| - 0.13 10.8 18.3 1.2 7.7 5.3 2.2 1 1 1 2 2 2 0 Flagellar Assembly Protein A Uds1 PF15456.6 gi|257387422|ref|YP_003177195.1| - 0.13 12.4 25.2 0.45 10.7 5.9 3.6 1 1 2 3 3 3 0 Up-regulated During Septation HalX PF08663.10 gi|257387422|ref|YP_003177195.1| - 0.13 12.6 49.9 2.2 8.7 1.3 6.3 1 1 4 5 5 4 0 HalX domain GrpE PF01025.19 gi|257387422|ref|YP_003177195.1| - 0.16 11.7 29.6 0.12 12.1 3.0 3.8 1 1 2 3 3 3 0 GrpE MbeD_MobD PF04899.12 gi|257387422|ref|YP_003177195.1| - 0.16 12.1 16.5 1.1 9.4 1.6 4.2 1 1 3 4 4 3 0 MbeD/MobD like Sec34 PF04136.15 gi|257387422|ref|YP_003177195.1| - 0.18 11.7 20.4 0.97 9.3 4.7 3.2 1 1 2 3 3 3 0 Sec34-like family DUF4686 PF15742.5 gi|257387422|ref|YP_003177195.1| - 0.18 10.9 30.1 0.52 9.4 7.8 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4686) SOGA PF11365.8 gi|257387422|ref|YP_003177195.1| - 0.2 12.8 23.5 0.46 11.6 11.1 2.9 1 1 1 2 2 1 0 Protein SOGA DUF4446 PF14584.6 gi|257387422|ref|YP_003177195.1| - 0.2 11.6 15.4 2 8.4 0.3 3.7 1 1 3 4 4 4 0 Protein of unknown function (DUF4446) MCPsignal PF00015.21 gi|257387422|ref|YP_003177195.1| - 0.22 11.3 12.2 0.26 11.1 3.8 2.3 1 1 2 3 3 3 0 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF3287 PF11690.8 gi|257387422|ref|YP_003177195.1| - 0.23 11.2 2.4 0.36 10.5 0.4 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3287) ApoO PF09769.9 gi|257387422|ref|YP_003177195.1| - 0.26 11.3 7.7 9.7 6.2 1.0 3.5 1 1 2 3 3 3 0 Apolipoprotein O Occludin_ELL PF07303.13 gi|257387422|ref|YP_003177195.1| - 0.3 11.9 13.8 1.2 10.0 0.6 3.6 1 1 2 3 3 3 0 Occludin homology domain Cep57_CLD PF14073.6 gi|257387422|ref|YP_003177195.1| - 0.34 10.9 28.2 0.62 10.1 20.9 2.1 1 1 1 2 2 2 0 Centrosome localisation domain of Cep57 EMP24_GP25L PF01105.24 gi|257387422|ref|YP_003177195.1| - 0.35 10.8 22.2 0.065 13.2 5.3 3.1 1 1 1 2 2 2 0 emp24/gp25L/p24 family/GOLD NYD-SP28_assoc PF14775.6 gi|257387422|ref|YP_003177195.1| - 0.35 11.0 19.4 1.7 8.8 1.0 4.8 2 1 2 4 4 4 0 Sperm tail C-terminal domain Rootletin PF15035.6 gi|257387422|ref|YP_003177195.1| - 0.38 10.7 34.9 1.5 8.8 6.8 2.9 1 1 2 3 3 3 0 Ciliary rootlet component, centrosome cohesion TraF_2 PF13729.6 gi|257387422|ref|YP_003177195.1| - 0.4 10.0 15.4 0.12 11.7 5.2 2.4 1 1 1 2 2 2 0 F plasmid transfer operon, TraF, protein DUF4140 PF13600.6 gi|257387422|ref|YP_003177195.1| - 0.43 11.0 34.7 0.24 11.9 10.3 4.5 1 1 1 2 2 1 0 N-terminal domain of unknown function (DUF4140) bZIP_Maf PF03131.17 gi|257387422|ref|YP_003177195.1| - 0.45 11.1 30.1 0.95 10.0 2.2 4.2 2 2 2 4 4 4 0 bZIP Maf transcription factor Phage_holin_7_1 PF16081.5 gi|257387422|ref|YP_003177195.1| - 0.47 10.6 2.9 0.61 10.3 0.3 2.3 1 1 2 3 3 1 0 Mycobacterial 2 TMS Phage Holin (M2 Hol) Family Troponin PF00992.20 gi|257387422|ref|YP_003177195.1| - 0.48 10.7 27.1 0.32 11.3 13.5 2.6 1 1 1 2 2 2 0 Troponin Pox_A_type_inc PF04508.12 gi|257387422|ref|YP_003177195.1| - 0.51 10.3 14.5 2 8.4 0.1 6.0 4 2 2 6 6 3 0 Viral A-type inclusion protein repeat Phage_GPO PF05929.11 gi|257387422|ref|YP_003177195.1| - 0.52 9.9 21.8 3.5 7.2 9.4 2.4 1 1 2 3 3 3 0 Phage capsid scaffolding protein (GPO) serine peptidase Fungal_TACC PF12709.7 gi|257387422|ref|YP_003177195.1| - 0.55 10.7 24.1 1.4 9.4 1.1 5.0 1 1 3 4 4 3 0 Fungal Transforming acidic coiled-coil (TACC) proteins FH2 PF02181.23 gi|257387422|ref|YP_003177195.1| - 0.57 9.2 16.9 1.4 7.9 7.0 2.2 1 1 1 2 2 2 0 Formin Homology 2 Domain Vac_Fusion PF02346.16 gi|257387422|ref|YP_003177195.1| - 0.6 9.8 6.0 3 7.5 0.3 3.1 2 1 0 3 3 2 0 Chordopoxvirus multifunctional envelope protein A27 Cortex-I_coil PF09304.10 gi|257387422|ref|YP_003177195.1| - 0.65 10.2 28.5 1.9 8.8 5.6 3.2 1 1 2 3 3 3 0 Cortexillin I, coiled coil FmiP_Thoc5 PF09766.9 gi|257387422|ref|YP_003177195.1| - 0.69 9.1 22.0 0.05 12.9 4.5 2.3 1 1 0 2 2 2 0 Fms-interacting protein/Thoc5 DUF848 PF05852.11 gi|257387422|ref|YP_003177195.1| - 0.69 10.0 24.7 0.31 11.1 1.6 3.2 1 1 2 3 3 3 0 Gammaherpesvirus protein of unknown function (DUF848) Nnf1 PF03980.14 gi|257387422|ref|YP_003177195.1| - 0.71 10.3 32.6 3.6 8.0 1.2 4.8 1 1 4 5 5 5 0 Nnf1 zf-C4H2 PF10146.9 gi|257387422|ref|YP_003177195.1| - 0.76 10.0 24.1 0.2 11.9 9.8 2.0 1 1 1 2 2 2 0 Zinc finger-containing protein DUF2935 PF11155.8 gi|257387422|ref|YP_003177195.1| - 0.85 10.0 8.4 1.9 8.8 0.7 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF2935) FAM76 PF16046.5 gi|257387422|ref|YP_003177195.1| - 0.85 8.9 16.3 3.6 6.9 16.3 2.1 1 1 0 1 1 1 0 FAM76 protein Med4 PF10018.9 gi|257387422|ref|YP_003177195.1| - 0.88 9.2 24.3 9.9 5.8 10.6 2.8 1 1 1 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 Fmp27_WPPW PF10359.9 gi|257387422|ref|YP_003177195.1| - 0.95 8.2 24.2 0.19 10.5 8.4 2.2 1 1 1 2 2 2 0 RNA pol II promoter Fmp27 protein domain AAA_27 PF13514.6 gi|257387422|ref|YP_003177195.1| - 0.96 9.0 10.3 4.6 6.8 4.0 2.2 2 0 0 2 2 2 0 AAA domain KELK PF15796.5 gi|257387422|ref|YP_003177195.1| - 1 9.9 28.9 0.08 13.4 8.5 3.2 1 1 2 3 3 2 0 KELK-motif containing domain of MRCK Ser/Thr protein kinase DUF745 PF05335.13 gi|257387422|ref|YP_003177195.1| - 1 9.0 20.7 0.23 11.2 10.6 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF745) HAUS5 PF14817.6 gi|257387422|ref|YP_003177195.1| - 1.1 8.0 28.8 0.21 10.3 8.7 2.3 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 5 DUF773 PF05600.12 gi|257387422|ref|YP_003177195.1| - 1.1 7.9 19.6 0.49 9.1 13.7 2.4 1 1 1 2 2 2 0 CDK5 regulatory subunit-associated protein 3 APG17 PF04108.12 gi|257387422|ref|YP_003177195.1| - 1.1 8.3 23.2 5.1 6.1 23.2 1.9 1 1 0 1 1 1 0 Autophagy protein Apg17 DLP_helical PF18709.1 gi|257387422|ref|YP_003177195.1| - 1.2 8.3 23.3 0.28 10.3 3.7 3.3 1 1 1 3 3 3 0 Dynamin-like helical domain XRCC4 PF06632.12 gi|257387422|ref|YP_003177195.1| - 1.2 7.9 21.3 0.16 10.8 7.0 2.4 1 1 0 2 2 2 0 DNA double-strand break repair and V(D)J recombination protein XRCC4 V_ATPase_I PF01496.19 gi|257387422|ref|YP_003177195.1| - 1.3 6.9 21.0 16 3.3 7.0 2.2 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family HIP1_clath_bdg PF16515.5 gi|257387422|ref|YP_003177195.1| - 1.3 9.7 32.3 2.7 8.6 9.5 3.2 1 1 1 2 2 2 0 Clathrin-binding domain of Huntingtin-interacting protein 1 FUSC PF04632.12 gi|257387422|ref|YP_003177195.1| - 1.4 7.4 17.6 3.2 6.2 17.6 1.6 1 1 0 1 1 1 0 Fusaric acid resistance protein family DASH_Dam1 PF08653.10 gi|257387422|ref|YP_003177195.1| - 1.4 8.8 14.6 3 7.7 1.5 4.9 1 1 4 5 5 4 0 DASH complex subunit Dam1 HAP1_N PF04849.13 gi|257387422|ref|YP_003177195.1| - 1.5 8.0 36.1 29 3.7 36.0 2.0 1 1 0 1 1 1 0 HAP1 N-terminal conserved region She9_MDM33 PF05546.11 gi|257387422|ref|YP_003177195.1| - 1.5 8.6 21.2 1.2 8.9 10.3 2.8 1 1 2 3 3 3 0 She9 / Mdm33 family COG6 PF06419.11 gi|257387422|ref|YP_003177195.1| - 1.7 6.8 20.7 2.1 6.5 6.6 2.5 1 1 2 3 3 3 0 Conserved oligomeric complex COG6 DUF632 PF04782.12 gi|257387422|ref|YP_003177195.1| - 1.7 7.9 11.7 2.7 7.2 0.5 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF632) Tup_N PF08581.10 gi|257387422|ref|YP_003177195.1| - 1.7 9.0 22.4 5.2 7.5 3.7 3.5 1 1 3 4 4 4 0 Tup N-terminal Cluap1 PF10234.9 gi|257387422|ref|YP_003177195.1| - 1.9 7.8 26.7 87 2.4 11.5 2.9 1 1 1 2 2 2 0 Clusterin-associated protein-1 JAKMIP_CC3 PF16034.5 gi|257387422|ref|YP_003177195.1| - 2 8.3 33.1 3.3e+03 -2.2 33.2 3.1 1 1 0 1 1 0 0 JAKMIP CC3 domain RasGAP_C PF03836.15 gi|257387422|ref|YP_003177195.1| - 2 8.6 19.7 1.5 9.0 7.2 3.2 1 1 1 2 2 2 0 RasGAP C-terminus Syntaxin_2 PF14523.6 gi|257387422|ref|YP_003177195.1| - 2.1 8.8 18.4 0.13 12.7 4.1 2.8 1 1 0 2 2 2 0 Syntaxin-like protein DUF3138 PF11336.8 gi|257387422|ref|YP_003177195.1| - 2.2 6.8 4.1 16 4.0 1.7 2.5 1 1 0 2 2 2 0 Protein of unknown function (DUF3138) CREPT PF16566.5 gi|257387422|ref|YP_003177195.1| - 2.4 8.3 20.3 6.1 7.0 5.8 2.6 1 1 1 2 2 2 0 Cell-cycle alteration and expression-elevated protein in tumour FemAB PF02388.16 gi|257387422|ref|YP_003177195.1| - 2.8 6.7 17.3 2.4 6.9 5.1 2.3 1 1 1 2 2 2 0 FemAB family UPF0449 PF15136.6 gi|257387422|ref|YP_003177195.1| - 2.9 8.4 28.9 11 6.6 6.3 4.5 1 1 2 3 3 2 0 Uncharacterised protein family UPF0449 DUF4337 PF14235.6 gi|257387422|ref|YP_003177195.1| - 2.9 8.0 18.4 5.3 7.1 6.5 2.9 1 1 2 3 3 3 0 Domain of unknown function (DUF4337) DUF5339 PF17274.2 gi|257387422|ref|YP_003177195.1| - 3.1 8.7 9.0 5.2 8.0 0.3 3.3 2 2 1 3 3 2 0 Family of unknown function (DUF5339) APC_N_CC PF16689.5 gi|257387422|ref|YP_003177195.1| - 3.3 7.9 23.4 4.4 7.4 3.6 4.2 3 2 0 3 3 2 0 Coiled-coil N-terminus of APC, dimerisation domain Rho_Binding PF08912.11 gi|257387422|ref|YP_003177195.1| - 3.4 8.6 31.5 4.8 8.1 2.9 4.5 1 1 3 4 4 4 0 Rho Binding Sulfatase_C PF14707.6 gi|257387422|ref|YP_003177195.1| - 3.4 8.4 7.7 8.2 7.2 0.7 2.9 1 1 0 2 2 2 0 C-terminal region of aryl-sulfatase KfrA_N PF11740.8 gi|257387422|ref|YP_003177195.1| - 3.6 8.3 37.6 0.24 12.1 6.0 4.4 1 1 4 5 5 4 0 Plasmid replication region DNA-binding N-term DUF4349 PF14257.6 gi|257387422|ref|YP_003177195.1| - 4 6.8 30.9 1.2 8.5 9.2 2.9 1 1 1 2 2 1 0 Domain of unknown function (DUF4349) DUF3573 PF12097.8 gi|257387422|ref|YP_003177195.1| - 4.2 6.1 6.9 9.1 5.0 0.6 2.3 1 1 0 2 2 2 0 Protein of unknown function (DUF3573) HAUS6_N PF14661.6 gi|257387422|ref|YP_003177195.1| - 4.3 6.8 20.3 74 2.8 8.8 2.8 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 6 N-terminus FTA4 PF13093.6 gi|257387422|ref|YP_003177195.1| - 4.4 7.1 24.4 2.6 7.9 3.0 2.9 1 1 2 3 3 3 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 DUF4164 PF13747.6 gi|257387422|ref|YP_003177195.1| - 4.6 7.6 38.9 0.35 11.2 14.1 3.2 1 1 3 4 4 4 0 Domain of unknown function (DUF4164) SPATA24 PF15175.6 gi|257387422|ref|YP_003177195.1| - 4.8 7.0 17.7 5.5 6.9 7.0 2.0 1 1 1 2 2 2 0 Spermatogenesis-associated protein 24 DUF3958 PF13125.6 gi|257387422|ref|YP_003177195.1| - 5.1 7.4 35.2 8.4 6.7 2.2 4.3 1 1 1 3 3 3 0 Protein of unknown function (DUF3958) USP8_interact PF08941.10 gi|257387422|ref|YP_003177195.1| - 5.9 6.7 12.2 9.9 5.9 2.4 3.0 1 1 2 3 3 3 0 USP8 interacting P4Ha_N PF08336.11 gi|257387422|ref|YP_003177195.1| - 6.2 6.8 16.6 1.6 8.7 0.5 3.7 1 1 3 4 4 4 0 Prolyl 4-Hydroxylase alpha-subunit, N-terminal region CorA PF01544.18 gi|257387422|ref|YP_003177195.1| - 6.6 6.0 22.1 2.3 7.4 7.1 2.3 1 1 1 2 2 2 0 CorA-like Mg2+ transporter protein Cep57_MT_bd PF06657.13 gi|257387422|ref|YP_003177195.1| - 6.9 7.2 23.7 9.7 6.7 9.2 3.8 1 1 3 4 4 3 0 Centrosome microtubule-binding domain of Cep57 MIP-T3_C PF17749.1 gi|257387422|ref|YP_003177195.1| - 8.4 6.3 23.8 15 5.5 4.4 2.8 1 1 1 2 2 2 0 Microtubule-binding protein MIP-T3 C-terminal region YscO-like PF16789.5 gi|257387422|ref|YP_003177195.1| - 8.6 6.4 23.2 23 5.0 5.2 2.6 1 1 2 3 3 3 0 YscO-like protein NuA4 PF09340.10 gi|257387422|ref|YP_003177195.1| - 8.6 6.3 13.3 10 6.1 2.2 3.9 1 1 2 3 3 3 0 Histone acetyltransferase subunit NuA4 Nup88 PF10168.9 gi|257387422|ref|YP_003177195.1| - 9 4.0 19.3 1.3 6.7 8.8 2.1 1 1 1 2 2 2 0 Nuclear pore component kleA_kleC PF17383.2 gi|257387422|ref|YP_003177195.1| - 9.1 6.7 19.1 31 5.0 0.5 4.4 1 1 2 4 4 4 0 Uncharacterized KorC regulated protein A Osmo_CC PF08946.10 gi|257387422|ref|YP_003177195.1| - 9.7 6.5 21.4 7.3 6.9 5.3 4.4 1 1 3 4 4 3 0 Osmosensory transporter coiled coil VWA PF00092.28 gi|257387423|ref|YP_003177196.1| - 4.5e-19 69.4 0.1 9.8e-18 65.0 0.0 2.7 2 1 1 3 3 3 1 von Willebrand factor type A domain VWA_2 PF13519.6 gi|257387423|ref|YP_003177196.1| - 1.9e-15 57.4 0.5 6e-15 55.8 0.2 2.1 2 0 0 2 2 2 1 von Willebrand factor type A domain VWA_3 PF13768.6 gi|257387423|ref|YP_003177196.1| - 5.6e-08 32.9 0.0 2e-07 31.1 0.0 1.9 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.14 gi|257387423|ref|YP_003177196.1| - 1.6e-05 24.4 0.7 0.00012 21.5 0.0 2.5 2 1 1 3 3 3 1 VWA domain containing CoxE-like protein Big_3_5 PF16640.5 gi|257387423|ref|YP_003177196.1| - 0.00058 20.0 0.5 0.00058 20.0 0.5 3.8 3 1 1 4 4 4 1 Bacterial Ig-like domain (group 3) ABC_transp_aux PF09822.9 gi|257387423|ref|YP_003177196.1| - 0.12 11.9 0.0 0.2 11.1 0.0 1.4 1 0 0 1 1 1 0 ABC-type uncharacterized transport system BatA PF07584.11 gi|257387423|ref|YP_003177196.1| - 0.34 11.3 3.5 1.4 9.3 3.5 2.0 1 1 0 1 1 1 0 Aerotolerance regulator N-terminal BatA PF07584.11 gi|257387424|ref|YP_003177197.1| - 7.7e-17 61.4 7.3 1.5e-16 60.5 7.3 1.5 1 0 0 1 1 1 1 Aerotolerance regulator N-terminal VWA_2 PF13519.6 gi|257387424|ref|YP_003177197.1| - 3.5e-06 27.6 0.1 8.8e-06 26.3 0.1 1.7 1 0 0 1 1 1 1 von Willebrand factor type A domain DUF58 PF01882.18 gi|257387424|ref|YP_003177197.1| - 0.0053 17.0 0.3 0.02 15.2 0.3 1.9 1 0 0 1 1 1 1 Protein of unknown function DUF58 DUF898 PF05987.13 gi|257387424|ref|YP_003177197.1| - 0.021 13.9 0.2 0.032 13.3 0.2 1.2 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF898) DUF3357 PF11837.8 gi|257387424|ref|YP_003177197.1| - 0.41 11.1 2.1 1.6 9.2 2.1 2.0 1 0 0 1 1 1 0 Domain of unknown function (DUF3357) DUF3368 PF11848.8 gi|257387425|ref|YP_003177198.1| - 0.0029 17.3 0.2 0.0085 15.8 0.1 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF3368) PIN_9 PF18477.1 gi|257387425|ref|YP_003177198.1| - 0.012 15.9 0.2 0.025 14.9 0.2 1.5 1 0 0 1 1 1 0 PIN like domain PIN_4 PF13638.6 gi|257387425|ref|YP_003177198.1| - 0.018 15.3 0.3 1.5 9.1 0.0 2.3 1 1 1 2 2 2 0 PIN domain ZnuA PF01297.17 gi|257387425|ref|YP_003177198.1| - 0.17 11.2 0.0 0.23 10.9 0.0 1.1 1 0 0 1 1 1 0 Zinc-uptake complex component A periplasmic RHH_1 PF01402.21 gi|257387426|ref|YP_003177199.1| - 0.0076 16.2 0.8 0.0076 16.2 0.8 2.1 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family PSK_trans_fac PF07704.11 gi|257387426|ref|YP_003177199.1| - 0.076 13.8 4.0 0.13 13.0 4.0 1.3 1 1 0 1 1 1 0 Rv0623-like transcription factor LPMO_10 PF03067.15 gi|257387427|ref|YP_003177200.1| - 1.1e-34 120.8 0.5 1.1e-34 120.8 0.5 1.8 2 1 0 2 2 2 1 Lytic polysaccharide mono-oxygenase, cellulose-degrading CBM_5_12 PF02839.14 gi|257387427|ref|YP_003177200.1| - 5.3e-09 36.2 28.0 4.7e-06 26.9 10.0 4.4 4 1 0 4 4 4 2 Carbohydrate binding domain CBM_5_12_2 PF14600.6 gi|257387427|ref|YP_003177200.1| - 1.3e-05 25.0 13.9 0.017 15.0 3.4 2.5 2 0 0 2 2 2 2 Cellulose-binding domain DUF4191 PF13829.6 gi|257387428|ref|YP_003177201.1| - 1.3 8.3 4.2 1.8 7.9 4.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4191) FUSC-like PF12805.7 gi|257387428|ref|YP_003177201.1| - 2.2 7.3 5.2 2.6 7.0 5.2 1.1 1 0 0 1 1 1 0 FUSC-like inner membrane protein yccS HTH_5 PF01022.20 gi|257387429|ref|YP_003177202.1| - 1.1e-19 70.0 1.0 4e-14 52.2 0.0 2.7 3 0 0 3 3 3 2 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|257387429|ref|YP_003177202.1| - 9.8e-14 51.2 0.4 1.4e-11 44.3 0.1 2.4 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.19 gi|257387429|ref|YP_003177202.1| - 5.8e-10 38.9 0.1 9.1e-06 25.5 0.0 2.3 2 0 0 2 2 2 2 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|257387429|ref|YP_003177202.1| - 7.8e-09 35.3 0.5 3.7e-08 33.1 0.1 2.2 2 1 0 2 2 2 1 MarR family MarR PF01047.22 gi|257387429|ref|YP_003177202.1| - 3.1e-07 30.2 0.0 1.3e-06 28.3 0.0 1.9 2 0 0 2 2 2 1 MarR family Rrf2 PF02082.20 gi|257387429|ref|YP_003177202.1| - 4.6e-07 30.1 0.0 0.004 17.5 0.0 2.3 2 0 0 2 2 2 2 Transcriptional regulator HTH_24 PF13412.6 gi|257387429|ref|YP_003177202.1| - 6.5e-07 28.8 0.2 2.2e-05 23.9 0.1 3.1 2 1 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_Crp_2 PF13545.6 gi|257387429|ref|YP_003177202.1| - 2.1e-06 27.6 0.0 0.00026 20.9 0.1 2.5 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain DprA_WH PF17782.1 gi|257387429|ref|YP_003177202.1| - 1.3e-05 25.2 3.0 0.00084 19.4 0.1 2.6 2 1 0 2 2 2 1 DprA winged helix domain HTH_11 PF08279.12 gi|257387429|ref|YP_003177202.1| - 5e-05 23.2 0.2 0.00012 22.0 0.0 1.7 2 0 0 2 2 1 1 HTH domain Fe_dep_repress PF01325.19 gi|257387429|ref|YP_003177202.1| - 9.8e-05 22.5 0.0 0.0013 18.9 0.0 2.3 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain HTH_CodY PF08222.11 gi|257387429|ref|YP_003177202.1| - 0.00022 20.7 0.0 0.00062 19.3 0.0 1.7 2 0 0 2 2 1 1 CodY helix-turn-helix domain PadR PF03551.14 gi|257387429|ref|YP_003177202.1| - 0.00036 20.4 0.9 0.0041 17.0 0.1 3.0 3 1 0 3 3 3 1 Transcriptional regulator PadR-like family DUF4423 PF14394.6 gi|257387429|ref|YP_003177202.1| - 0.0008 19.2 0.0 1.3 8.7 0.0 2.4 2 0 0 2 2 2 2 Domain of unknown function (DUF4423) LexA_DNA_bind PF01726.16 gi|257387429|ref|YP_003177202.1| - 0.0014 18.4 0.2 0.038 13.8 0.0 2.7 3 0 0 3 3 3 1 LexA DNA binding domain DUF2250 PF10007.9 gi|257387429|ref|YP_003177202.1| - 0.0015 18.6 0.0 0.1 12.8 0.0 2.3 2 0 0 2 2 2 1 Uncharacterized protein conserved in archaea (DUF2250) GntR PF00392.21 gi|257387429|ref|YP_003177202.1| - 0.0017 18.0 0.6 1.8 8.3 0.0 3.0 3 0 0 3 3 3 1 Bacterial regulatory proteins, gntR family HTH_47 PF16221.5 gi|257387429|ref|YP_003177202.1| - 0.0029 17.2 0.0 2.5 7.7 0.0 2.4 2 0 0 2 2 2 2 winged helix-turn-helix HTH_IclR PF09339.10 gi|257387429|ref|YP_003177202.1| - 0.0035 17.1 0.0 0.038 13.8 0.0 2.6 2 1 0 2 2 2 1 IclR helix-turn-helix domain HemN_C PF06969.16 gi|257387429|ref|YP_003177202.1| - 0.0051 16.9 0.3 4.5 7.4 0.0 3.1 3 1 0 3 3 3 1 HemN C-terminal domain HTH_27 PF13463.6 gi|257387429|ref|YP_003177202.1| - 0.007 16.8 0.0 0.02 15.4 0.0 1.8 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_9 PF08221.11 gi|257387429|ref|YP_003177202.1| - 0.013 15.6 0.0 0.084 13.0 0.0 2.0 2 0 0 2 2 2 0 RNA polymerase III subunit RPC82 helix-turn-helix domain HxlR PF01638.17 gi|257387429|ref|YP_003177202.1| - 0.016 15.0 0.0 0.42 10.5 0.0 2.5 3 0 0 3 3 3 0 HxlR-like helix-turn-helix BLACT_WH PF17778.1 gi|257387429|ref|YP_003177202.1| - 0.021 14.8 2.1 0.51 10.4 0.1 2.6 2 0 0 2 2 2 0 Beta-lactamase associated winged helix domain HTH_AsnC-type PF13404.6 gi|257387429|ref|YP_003177202.1| - 0.022 14.6 0.5 0.31 10.9 0.0 3.1 3 2 0 3 3 3 0 AsnC-type helix-turn-helix domain DDRGK PF09756.9 gi|257387429|ref|YP_003177202.1| - 0.036 13.7 0.0 0.072 12.7 0.0 1.4 1 0 0 1 1 1 0 DDRGK domain ArsR PF09824.9 gi|257387429|ref|YP_003177202.1| - 0.042 13.4 0.0 0.45 10.1 0.0 2.1 2 0 0 2 2 2 0 ArsR transcriptional regulator HTH_36 PF13730.6 gi|257387429|ref|YP_003177202.1| - 0.045 13.7 0.0 0.13 12.2 0.0 1.8 2 0 0 2 2 1 0 Helix-turn-helix domain HTH_10 PF04967.12 gi|257387429|ref|YP_003177202.1| - 0.048 13.5 0.0 0.11 12.3 0.0 1.6 1 0 0 1 1 1 0 HTH DNA binding domain RP-C PF03428.13 gi|257387429|ref|YP_003177202.1| - 0.057 13.1 0.1 0.43 10.2 0.0 2.3 3 0 0 3 3 3 0 Replication protein C N-terminal domain Cdc6_C PF09079.11 gi|257387429|ref|YP_003177202.1| - 0.059 13.3 0.0 0.16 12.0 0.0 1.7 1 0 0 1 1 1 0 CDC6, C terminal winged helix domain HTH_DeoR PF08220.12 gi|257387429|ref|YP_003177202.1| - 0.069 12.9 0.0 0.64 9.8 0.0 2.3 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain DUF2513 PF10711.9 gi|257387429|ref|YP_003177202.1| - 0.076 13.3 0.0 0.18 12.1 0.0 1.7 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) HTH_40 PF14493.6 gi|257387429|ref|YP_003177202.1| - 0.08 13.4 0.0 2.9 8.4 0.0 2.7 3 0 0 3 3 3 0 Helix-turn-helix domain FaeA PF04703.12 gi|257387429|ref|YP_003177202.1| - 0.11 12.9 0.0 0.29 11.5 0.0 1.7 1 0 0 1 1 1 0 FaeA-like protein FeoC PF09012.10 gi|257387429|ref|YP_003177202.1| - 0.13 12.4 0.0 16 5.6 0.0 2.4 2 0 0 2 2 2 0 FeoC like transcriptional regulator Mnd1 PF03962.15 gi|257387429|ref|YP_003177202.1| - 0.17 12.2 0.0 2.7 8.3 0.0 2.4 2 0 0 2 2 2 0 Mnd1 HTH domain HemX PF04375.14 gi|257387430|ref|YP_003177203.1| - 0.0026 17.1 2.9 0.0034 16.7 2.9 1.1 1 0 0 1 1 1 1 HemX, putative uroporphyrinogen-III C-methyltransferase SpoIIIAH PF12685.7 gi|257387430|ref|YP_003177203.1| - 7.6 6.3 12.5 6.7 6.5 2.9 2.2 2 0 0 2 2 2 0 SpoIIIAH-like protein acVLRF1 PF18859.1 gi|257387432|ref|YP_003177205.1| - 8.9e-31 106.9 3.0 8.9e-31 106.9 3.0 2.6 2 1 1 3 3 2 1 Actinobacteria/chloroflexi VLRF1 release factor eRF1_2 PF03464.15 gi|257387432|ref|YP_003177205.1| - 0.00094 19.5 0.0 0.0015 18.8 0.0 1.4 1 0 0 1 1 1 1 eRF1 domain 2 ABC_tran_CTD PF16326.5 gi|257387432|ref|YP_003177205.1| - 0.023 14.9 6.0 0.071 13.4 5.5 2.1 1 1 1 2 2 2 0 ABC transporter C-terminal domain CLZ PF16526.5 gi|257387432|ref|YP_003177205.1| - 0.032 14.6 7.0 0.045 14.1 2.6 2.5 1 1 0 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Atg14 PF10186.9 gi|257387432|ref|YP_003177205.1| - 0.066 12.3 4.5 0.1 11.7 4.5 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 DUF4472 PF14739.6 gi|257387432|ref|YP_003177205.1| - 0.083 13.6 4.5 0.17 12.6 4.5 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4472) HOOK PF05622.12 gi|257387432|ref|YP_003177205.1| - 0.087 11.0 5.5 0.12 10.6 5.5 1.1 1 0 0 1 1 1 0 HOOK protein Troponin PF00992.20 gi|257387432|ref|YP_003177205.1| - 0.099 12.9 7.0 0.19 12.0 7.0 1.4 1 0 0 1 1 1 0 Troponin DUF4407 PF14362.6 gi|257387432|ref|YP_003177205.1| - 0.1 11.9 2.8 0.15 11.3 2.8 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) DUF16 PF01519.16 gi|257387432|ref|YP_003177205.1| - 0.12 12.9 4.0 0.4 11.2 4.0 1.8 1 1 0 1 1 1 0 Protein of unknown function DUF16 Spc7 PF08317.11 gi|257387432|ref|YP_003177205.1| - 0.12 11.2 2.7 0.18 10.6 2.7 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein OmpH PF03938.14 gi|257387432|ref|YP_003177205.1| - 0.29 11.5 3.2 0.53 10.6 3.2 1.4 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) Clusterin PF01093.17 gi|257387432|ref|YP_003177205.1| - 0.34 9.9 1.3 0.47 9.4 1.3 1.1 1 0 0 1 1 1 0 Clusterin Snapin_Pallidin PF14712.6 gi|257387432|ref|YP_003177205.1| - 0.41 11.1 3.0 0.97 9.9 3.0 1.6 1 0 0 1 1 1 0 Snapin/Pallidin ADIP PF11559.8 gi|257387432|ref|YP_003177205.1| - 0.43 10.6 6.2 0.7 10.0 6.2 1.3 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding CorA PF01544.18 gi|257387432|ref|YP_003177205.1| - 0.53 9.6 4.5 0.95 8.7 4.5 1.4 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein XhlA PF10779.9 gi|257387432|ref|YP_003177205.1| - 0.73 10.1 3.6 0.84 9.9 0.7 2.5 2 1 1 3 3 2 0 Haemolysin XhlA Fmp27_WPPW PF10359.9 gi|257387432|ref|YP_003177205.1| - 0.91 8.3 3.5 1.2 7.9 3.5 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain DUF1664 PF07889.12 gi|257387432|ref|YP_003177205.1| - 1 9.4 2.2 2 8.5 2.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) BST2 PF16716.5 gi|257387432|ref|YP_003177205.1| - 2.9 8.5 6.2 11 6.7 6.2 1.8 1 1 0 1 1 1 0 Bone marrow stromal antigen 2 UPF0242 PF06785.11 gi|257387432|ref|YP_003177205.1| - 3.1 7.8 5.5 5.4 7.1 5.5 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus TSC22 PF01166.18 gi|257387432|ref|YP_003177205.1| - 3.8 7.9 6.2 26 5.2 0.7 2.4 2 0 0 2 2 2 0 TSC-22/dip/bun family WD40_alt PF14077.6 gi|257387432|ref|YP_003177205.1| - 3.9 7.4 7.3 5.9 6.8 0.7 2.3 2 0 0 2 2 2 0 Alternative WD40 repeat motif ZapB PF06005.12 gi|257387432|ref|YP_003177205.1| - 5 7.7 11.7 2e+02 2.5 11.7 2.5 1 1 0 1 1 1 0 Cell division protein ZapB Mei5 PF10376.9 gi|257387432|ref|YP_003177205.1| - 9.2 6.1 8.1 5.5 6.8 6.4 1.4 2 0 0 2 2 1 0 Double-strand recombination repair protein DUF4164 PF13747.6 gi|257387432|ref|YP_003177205.1| - 9.8 6.5 19.3 1.6 9.1 4.7 3.1 2 1 1 3 3 2 0 Domain of unknown function (DUF4164) DUF1611 PF07755.11 gi|257387433|ref|YP_003177206.1| - 4.9e-73 244.7 0.8 6.5e-73 244.3 0.8 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1611_C) P-loop domain DUF1611_N PF17396.2 gi|257387433|ref|YP_003177206.1| - 1.9e-29 101.8 0.1 1.5e-28 98.8 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF1611_N) Rossmann-like domain MR_MLE_C PF13378.6 gi|257387434|ref|YP_003177207.1| - 2.7e-39 135.0 4.1 4.7e-39 134.2 4.1 1.4 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|257387434|ref|YP_003177207.1| - 4.3e-10 39.8 0.1 9.7e-10 38.7 0.1 1.6 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MAAL_C PF07476.11 gi|257387434|ref|YP_003177207.1| - 9.8e-05 21.6 0.0 0.00019 20.7 0.0 1.4 1 0 0 1 1 1 1 Methylaspartate ammonia-lyase C-terminus Hexapep PF00132.24 gi|257387436|ref|YP_003177209.1| - 3.1e-13 48.9 10.1 3.9e-05 23.2 0.4 4.6 3 1 2 5 5 5 4 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|257387436|ref|YP_003177209.1| - 7.2e-08 32.0 6.9 0.00096 18.8 0.5 3.7 2 1 2 4 4 4 4 Hexapeptide repeat of succinyl-transferase Fucokinase PF07959.12 gi|257387436|ref|YP_003177209.1| - 0.021 13.8 0.0 0.022 13.7 0.0 1.1 1 0 0 1 1 1 0 L-fucokinase B_solenoid_ydck PF18836.1 gi|257387436|ref|YP_003177209.1| - 1.5 8.8 4.1 22 5.1 0.0 4.3 4 1 1 5 5 5 0 Beta solenoid repeat from YDCK Peptidase_S24 PF00717.23 gi|257387437|ref|YP_003177210.1| - 9.2e-06 25.5 0.1 1.9e-05 24.5 0.1 1.5 1 0 0 1 1 1 1 Peptidase S24-like Rhomboid PF01694.22 gi|257387438|ref|YP_003177211.1| - 0.00091 19.2 22.1 0.042 13.8 8.4 2.3 1 1 1 2 2 2 2 Rhomboid family CARDB PF07705.11 gi|257387439|ref|YP_003177212.1| - 6.4e-07 29.6 3.7 8.8e-05 22.7 1.0 2.9 3 0 0 3 3 3 2 CARDB DUF3416 PF11896.8 gi|257387439|ref|YP_003177212.1| - 0.037 14.3 0.2 0.12 12.7 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF3416) BsuPI PF12690.7 gi|257387439|ref|YP_003177212.1| - 0.17 11.9 0.2 1.6 8.8 0.0 2.7 3 0 0 3 3 3 0 Intracellular proteinase inhibitor DUF5305 PF17231.2 gi|257387441|ref|YP_003177214.1| - 4.8e-54 183.1 0.6 9.9e-54 182.0 0.1 1.7 2 0 0 2 2 2 1 Family of unknown function (DUF5305) DUF4307 PF14155.6 gi|257387441|ref|YP_003177214.1| - 0.051 13.4 0.4 0.051 13.4 0.4 2.7 3 1 1 4 4 4 0 Domain of unknown function (DUF4307) RicinB_lectin_2 PF14200.6 gi|257387442|ref|YP_003177215.1| - 1.4e-10 41.8 1.8 1.2e-07 32.4 0.5 3.0 2 1 1 3 3 3 2 Ricin-type beta-trefoil lectin domain-like Ricin_B_lectin PF00652.22 gi|257387442|ref|YP_003177215.1| - 0.0037 17.5 0.0 0.74 10.1 0.0 2.3 2 0 0 2 2 2 2 Ricin-type beta-trefoil lectin domain Usp PF00582.26 gi|257387443|ref|YP_003177216.1| - 6e-30 104.6 2.1 6.6e-30 104.5 2.1 1.0 1 0 0 1 1 1 1 Universal stress protein family tRNA-synt_2b PF00587.25 gi|257387444|ref|YP_003177217.1| - 6.8e-29 101.1 0.0 2e-28 99.6 0.0 1.7 1 1 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) HGTP_anticodon PF03129.20 gi|257387444|ref|YP_003177217.1| - 4.8e-16 58.7 0.6 4.8e-16 58.7 0.6 1.8 2 0 0 2 2 2 1 Anticodon binding domain TGS PF02824.21 gi|257387444|ref|YP_003177217.1| - 4.5e-15 55.4 0.1 1.3e-14 54.0 0.1 1.8 1 0 0 1 1 1 1 TGS domain tRNA_SAD PF07973.14 gi|257387444|ref|YP_003177217.1| - 8.4e-14 51.4 0.0 1.5e-13 50.6 0.0 1.5 1 0 0 1 1 1 1 Threonyl and Alanyl tRNA synthetase second additional domain tRNA-synt_His PF13393.6 gi|257387444|ref|YP_003177217.1| - 0.047 13.0 0.0 0.086 12.1 0.0 1.3 1 0 0 1 1 1 0 Histidyl-tRNA synthetase tRNA-synt_2d PF01409.20 gi|257387444|ref|YP_003177217.1| - 0.053 13.0 0.0 0.097 12.1 0.0 1.3 1 0 0 1 1 1 0 tRNA synthetases class II core domain (F) ThiS PF02597.20 gi|257387444|ref|YP_003177217.1| - 0.24 12.1 2.0 3.3 8.4 0.0 3.0 3 0 0 3 3 3 0 ThiS family Tfb5 PF06331.12 gi|257387444|ref|YP_003177217.1| - 0.86 9.6 3.1 36 4.5 0.1 2.9 2 0 0 2 2 2 0 Transcription factor TFIIH complex subunit Tfb5 PspA_IM30 PF04012.12 gi|257387446|ref|YP_003177219.1| - 2.4e-33 115.6 37.5 3.8e-33 114.9 37.5 1.3 1 0 0 1 1 1 1 PspA/IM30 family Snf7 PF03357.21 gi|257387446|ref|YP_003177219.1| - 0.0019 17.8 18.9 0.0019 17.8 18.9 4.2 1 1 2 3 3 2 1 Snf7 DUF3584 PF12128.8 gi|257387446|ref|YP_003177219.1| - 0.0094 13.5 34.5 0.012 13.1 34.5 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) MCPVI PF02993.14 gi|257387446|ref|YP_003177219.1| - 0.1 12.4 18.6 0.74 9.6 0.6 2.2 1 1 1 2 2 2 0 Minor capsid protein VI DUF1664 PF07889.12 gi|257387446|ref|YP_003177219.1| - 0.11 12.6 24.4 0.024 14.7 10.0 3.3 1 1 2 3 3 3 0 Protein of unknown function (DUF1664) DUF3535 PF12054.8 gi|257387446|ref|YP_003177219.1| - 0.36 10.0 10.3 0.6 9.3 10.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3535) DUF3450 PF11932.8 gi|257387446|ref|YP_003177219.1| - 0.37 10.0 36.8 0.24 10.7 7.4 3.1 1 1 2 3 3 3 0 Protein of unknown function (DUF3450) YabA PF06156.13 gi|257387446|ref|YP_003177219.1| - 0.55 10.9 29.0 0.44 11.2 5.3 3.5 1 1 2 3 3 3 0 Initiation control protein YabA AAA_13 PF13166.6 gi|257387446|ref|YP_003177219.1| - 0.6 8.7 30.0 0.29 9.7 27.2 1.6 1 1 1 2 2 2 0 AAA domain Peptidase_M1_N PF17900.1 gi|257387446|ref|YP_003177219.1| - 1.4 9.1 7.0 2.3 8.4 7.0 1.3 1 0 0 1 1 1 0 Peptidase M1 N-terminal domain ERM PF00769.19 gi|257387446|ref|YP_003177219.1| - 2.3 8.0 49.0 0.69 9.7 45.9 1.7 1 1 1 2 2 2 0 Ezrin/radixin/moesin family Par3_HAL_N_term PF12053.8 gi|257387446|ref|YP_003177219.1| - 2.8 8.2 5.8 1.4 9.1 1.3 2.5 2 0 0 2 2 2 0 N-terminal of Par3 and HAL proteins NPV_P10 PF05531.12 gi|257387446|ref|YP_003177219.1| - 2.9 8.4 17.5 7.6 7.1 0.4 4.1 2 1 1 3 3 3 0 Nucleopolyhedrovirus P10 protein DUF724 PF05266.14 gi|257387446|ref|YP_003177219.1| - 3.7 7.3 35.5 0.72 9.7 24.1 3.0 1 1 1 2 2 2 0 Protein of unknown function (DUF724) Prominin PF05478.11 gi|257387446|ref|YP_003177219.1| - 4.2 5.2 16.1 8.4 4.2 16.2 1.3 1 1 0 1 1 1 0 Prominin RmuC PF02646.16 gi|257387446|ref|YP_003177219.1| - 4.8 6.2 26.1 1.9 7.6 0.8 3.4 1 1 2 3 3 3 0 RmuC family TFIIA PF03153.13 gi|257387446|ref|YP_003177219.1| - 5.3 6.9 31.7 6.3 6.7 31.7 1.1 1 0 0 1 1 1 0 Transcription factor IIA, alpha/beta subunit Exonuc_VII_L PF02601.15 gi|257387446|ref|YP_003177219.1| - 6.3 6.3 27.0 20 4.6 27.1 1.8 1 1 0 1 1 1 0 Exonuclease VII, large subunit LUC7 PF03194.15 gi|257387446|ref|YP_003177219.1| - 6.6 6.3 37.0 6 6.5 23.6 2.5 1 1 1 2 2 2 0 LUC7 N_terminus DASH_Dam1 PF08653.10 gi|257387446|ref|YP_003177219.1| - 7.4 6.5 6.6 18 5.2 0.4 3.6 3 0 0 3 3 3 0 DASH complex subunit Dam1 DUF2894 PF11445.8 gi|257387446|ref|YP_003177219.1| - 8.2 6.9 15.1 47 4.4 12.4 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF2894) DUF5082 PF16888.5 gi|257387446|ref|YP_003177219.1| - 8.8 6.6 28.1 21 5.4 3.4 3.4 1 1 0 2 2 2 0 Domain of unknown function (DUF5082) Snapin_Pallidin PF14712.6 gi|257387446|ref|YP_003177219.1| - 9.5 6.7 29.7 0.13 12.7 9.8 3.6 1 1 2 4 4 4 0 Snapin/Pallidin DLH PF01738.18 gi|257387447|ref|YP_003177220.1| - 0.0014 18.3 0.0 0.0017 17.9 0.0 1.1 1 0 0 1 1 1 1 Dienelactone hydrolase family Peptidase_S15 PF02129.18 gi|257387447|ref|YP_003177220.1| - 0.0031 17.1 0.0 0.0045 16.6 0.0 1.1 1 0 0 1 1 1 1 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_3 PF07859.13 gi|257387447|ref|YP_003177220.1| - 0.0037 17.1 0.0 0.0042 17.0 0.0 1.2 1 0 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|257387447|ref|YP_003177220.1| - 0.0041 16.4 0.1 0.1 11.9 0.1 2.4 1 1 1 2 2 2 1 Serine aminopeptidase, S33 VirJ PF06057.11 gi|257387447|ref|YP_003177220.1| - 0.013 15.4 0.0 3.7 7.4 0.0 2.1 1 1 1 2 2 2 0 Bacterial virulence protein (VirJ) Abhydrolase_6 PF12697.7 gi|257387447|ref|YP_003177220.1| - 0.038 14.6 10.7 0.21 12.2 10.7 1.9 1 1 0 1 1 1 0 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|257387447|ref|YP_003177220.1| - 0.056 13.1 0.0 0.15 11.7 0.0 1.7 1 1 1 2 2 2 0 alpha/beta hydrolase fold Thioesterase PF00975.20 gi|257387447|ref|YP_003177220.1| - 0.15 12.1 0.7 0.36 10.9 0.6 1.6 1 1 1 2 2 2 0 Thioesterase domain Esterase PF00756.20 gi|257387447|ref|YP_003177220.1| - 0.19 11.3 0.0 0.23 11.1 0.0 1.2 1 0 0 1 1 1 0 Putative esterase BAAT_C PF08840.11 gi|257387447|ref|YP_003177220.1| - 0.26 11.2 0.0 0.35 10.7 0.0 1.3 1 0 0 1 1 1 0 BAAT / Acyl-CoA thioester hydrolase C terminal CTP_synth_N PF06418.14 gi|257387448|ref|YP_003177221.1| - 1.2e-123 411.6 0.2 1.5e-123 411.3 0.2 1.1 1 0 0 1 1 1 1 CTP synthase N-terminus GATase PF00117.28 gi|257387448|ref|YP_003177221.1| - 5e-55 186.2 0.0 8.5e-55 185.5 0.0 1.4 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|257387448|ref|YP_003177221.1| - 1.4e-07 31.5 0.0 3.2e-07 30.3 0.0 1.6 1 1 0 1 1 1 1 Peptidase C26 CbiA PF01656.23 gi|257387448|ref|YP_003177221.1| - 0.0025 17.9 0.0 0.0035 17.4 0.0 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain GATase_3 PF07685.14 gi|257387448|ref|YP_003177221.1| - 0.0051 16.4 0.0 0.0095 15.6 0.0 1.4 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain Lipase_chap PF03280.14 gi|257387448|ref|YP_003177221.1| - 0.016 15.2 0.1 0.03 14.3 0.1 1.4 1 0 0 1 1 1 0 Proteobacterial lipase chaperone protein DJ-1_PfpI PF01965.24 gi|257387448|ref|YP_003177221.1| - 0.093 12.5 0.0 1 9.1 0.0 2.3 2 0 0 2 2 2 0 DJ-1/PfpI family GMP_synt_C PF00958.22 gi|257387449|ref|YP_003177222.1| - 3.5e-29 100.7 0.3 2e-28 98.3 0.1 2.1 2 0 0 2 2 2 1 GMP synthase C terminal domain NAD_synthase PF02540.17 gi|257387449|ref|YP_003177222.1| - 1.9e-08 33.7 0.0 1.8e-05 24.0 0.0 2.2 2 0 0 2 2 2 2 NAD synthase tRNA_Me_trans PF03054.16 gi|257387449|ref|YP_003177222.1| - 0.00025 19.9 0.0 0.0043 15.9 0.0 2.1 2 0 0 2 2 2 1 tRNA methyl transferase QueC PF06508.13 gi|257387449|ref|YP_003177222.1| - 0.0079 15.7 0.0 0.034 13.7 0.0 1.9 1 1 0 2 2 2 1 Queuosine biosynthesis protein QueC Asn_synthase PF00733.21 gi|257387449|ref|YP_003177222.1| - 0.021 14.5 0.0 0.034 13.8 0.0 1.3 1 0 0 1 1 1 0 Asparagine synthase ThiI PF02568.14 gi|257387449|ref|YP_003177222.1| - 0.038 13.6 0.0 0.095 12.3 0.0 1.6 1 1 0 1 1 1 0 Thiamine biosynthesis protein (ThiI) PAPS_reduct PF01507.19 gi|257387449|ref|YP_003177222.1| - 0.11 12.6 0.0 0.2 11.7 0.0 1.5 1 0 0 1 1 1 0 Phosphoadenosine phosphosulfate reductase family TrkA_N PF02254.18 gi|257387450|ref|YP_003177223.1| - 0.026 14.8 0.0 0.031 14.5 0.0 1.1 1 0 0 1 1 1 0 TrkA-N domain Ribosomal_L9_C PF03948.14 gi|257387450|ref|YP_003177223.1| - 0.084 13.3 0.0 0.12 12.9 0.0 1.2 1 0 0 1 1 1 0 Ribosomal protein L9, C-terminal domain Cas6_N PF17952.1 gi|257387452|ref|YP_003177225.1| - 0.084 13.2 0.0 0.1 12.9 0.0 1.1 1 0 0 1 1 1 0 Cas6 N-terminal domain PEGA PF08308.11 gi|257387452|ref|YP_003177225.1| - 0.12 12.3 0.0 0.35 10.8 0.0 1.8 2 0 0 2 2 2 0 PEGA domain PSII_BNR PF14870.6 gi|257387453|ref|YP_003177226.1| - 1.2e-05 24.8 12.2 0.0024 17.2 0.6 4.0 1 1 3 4 4 4 3 Photosynthesis system II assembly factor YCF48 TAT_signal PF10518.9 gi|257387453|ref|YP_003177226.1| - 0.021 14.6 6.0 0.021 14.6 6.0 2.8 3 0 0 3 3 3 0 TAT (twin-arginine translocation) pathway signal sequence Lactamase_B PF00753.27 gi|257387454|ref|YP_003177227.1| - 8e-21 74.9 4.8 9.8e-21 74.7 4.8 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|257387454|ref|YP_003177227.1| - 6.8e-06 25.7 0.0 8.4e-06 25.4 0.0 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain MoCF_biosynth PF00994.24 gi|257387455|ref|YP_003177228.1| - 1.6e-15 57.0 1.0 2.5e-15 56.4 1.0 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain ADH_zinc_N PF00107.26 gi|257387457|ref|YP_003177230.1| - 5.5e-36 123.4 0.3 1.1e-35 122.4 0.3 1.5 1 0 0 1 1 1 1 Zinc-binding dehydrogenase ADH_N PF08240.12 gi|257387457|ref|YP_003177230.1| - 1.3e-23 83.0 0.1 2.6e-23 82.0 0.1 1.5 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N_2 PF13602.6 gi|257387457|ref|YP_003177230.1| - 3.9e-20 73.2 0.1 6.5e-20 72.5 0.1 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase adh_short PF00106.25 gi|257387457|ref|YP_003177230.1| - 2.6e-05 23.8 0.6 0.00032 20.2 1.2 2.1 2 0 0 2 2 2 1 short chain dehydrogenase DapB_N PF01113.20 gi|257387457|ref|YP_003177230.1| - 0.0021 18.2 0.2 0.0042 17.2 0.2 1.4 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, N-terminus ACP_syn_III_C PF08541.10 gi|257387457|ref|YP_003177230.1| - 0.034 14.3 0.4 1.7 8.9 0.1 2.5 2 0 0 2 2 2 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 2-Hacid_dh_C PF02826.19 gi|257387457|ref|YP_003177230.1| - 0.088 12.2 0.0 0.13 11.6 0.0 1.2 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain THF_DHG_CYH_C PF02882.19 gi|257387457|ref|YP_003177230.1| - 0.13 11.6 1.2 0.63 9.4 0.2 2.2 1 1 1 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Epimerase PF01370.21 gi|257387457|ref|YP_003177230.1| - 0.15 11.5 0.7 0.21 11.0 0.7 1.2 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family NADH_4Fe-4S PF10589.9 gi|257387457|ref|YP_003177230.1| - 0.18 11.9 1.7 0.44 10.7 1.7 1.6 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region DUF3339 PF11820.8 gi|257387458|ref|YP_003177231.1| - 0.016 15.4 0.4 0.021 15.0 0.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3339) ABC_tran PF00005.27 gi|257387459|ref|YP_003177232.1| - 3.7e-36 124.7 0.0 5.7e-36 124.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 gi|257387459|ref|YP_003177232.1| - 1.1e-08 35.1 1.9 2.4e-08 34.0 0.6 2.4 3 0 0 3 3 1 1 TOBE domain AAA_21 PF13304.6 gi|257387459|ref|YP_003177232.1| - 2.3e-08 34.2 0.3 0.00052 19.9 0.2 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|257387459|ref|YP_003177232.1| - 8.8e-06 26.2 1.0 2.1e-05 25.0 1.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 gi|257387459|ref|YP_003177232.1| - 1.1e-05 25.1 0.0 1.9e-05 24.2 0.0 1.3 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA PF00004.29 gi|257387459|ref|YP_003177232.1| - 2.2e-05 24.9 0.0 0.00012 22.5 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RsgA_GTPase PF03193.16 gi|257387459|ref|YP_003177232.1| - 0.00043 20.2 0.0 0.00097 19.1 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_25 PF13481.6 gi|257387459|ref|YP_003177232.1| - 0.00055 19.6 0.4 0.016 14.8 0.4 2.5 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|257387459|ref|YP_003177232.1| - 0.0032 18.0 0.1 0.0059 17.1 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|257387459|ref|YP_003177232.1| - 0.0046 16.7 0.1 0.01 15.5 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain Rad17 PF03215.15 gi|257387459|ref|YP_003177232.1| - 0.0066 16.4 0.0 0.01 15.8 0.0 1.2 1 0 0 1 1 1 1 Rad17 P-loop domain NB-ARC PF00931.22 gi|257387459|ref|YP_003177232.1| - 0.016 14.4 0.0 0.024 13.8 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_5 PF07728.14 gi|257387459|ref|YP_003177232.1| - 0.018 15.0 0.1 0.044 13.8 0.1 1.8 1 1 0 2 2 2 0 AAA domain (dynein-related subfamily) Mg_chelatase PF01078.21 gi|257387459|ref|YP_003177232.1| - 0.019 14.4 0.0 0.08 12.3 0.0 1.9 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_18 PF13238.6 gi|257387459|ref|YP_003177232.1| - 0.025 15.1 0.0 0.045 14.3 0.0 1.5 1 1 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.25 gi|257387459|ref|YP_003177232.1| - 0.044 13.4 0.0 0.072 12.7 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain NTPase_1 PF03266.15 gi|257387459|ref|YP_003177232.1| - 0.05 13.5 0.1 0.78 9.6 0.0 2.2 2 0 0 2 2 2 0 NTPase AAA_22 PF13401.6 gi|257387459|ref|YP_003177232.1| - 0.052 13.8 0.1 0.22 11.8 0.1 2.0 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|257387459|ref|YP_003177232.1| - 0.054 13.7 0.0 0.16 12.2 0.0 1.8 1 0 0 1 1 1 0 AAA domain TsaE PF02367.17 gi|257387459|ref|YP_003177232.1| - 0.057 13.4 0.0 0.12 12.4 0.0 1.4 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_30 PF13604.6 gi|257387459|ref|YP_003177232.1| - 0.057 13.1 0.1 0.11 12.2 0.1 1.6 1 1 0 1 1 1 0 AAA domain PRK PF00485.18 gi|257387459|ref|YP_003177232.1| - 0.074 12.8 0.0 0.15 11.8 0.0 1.5 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family AAA_14 PF13173.6 gi|257387459|ref|YP_003177232.1| - 0.081 13.0 0.0 0.26 11.3 0.0 1.9 2 0 0 2 2 1 0 AAA domain ATPase PF06745.13 gi|257387459|ref|YP_003177232.1| - 0.081 12.3 0.3 9.1 5.6 0.0 2.1 2 0 0 2 2 2 0 KaiC AAA_33 PF13671.6 gi|257387459|ref|YP_003177232.1| - 0.083 13.1 0.2 0.23 11.6 0.1 2.0 2 1 0 2 2 1 0 AAA domain NACHT PF05729.12 gi|257387459|ref|YP_003177232.1| - 0.1 12.5 0.1 0.2 11.6 0.1 1.4 1 0 0 1 1 1 0 NACHT domain PduV-EutP PF10662.9 gi|257387459|ref|YP_003177232.1| - 0.11 12.2 0.1 0.19 11.4 0.1 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_19 PF13245.6 gi|257387459|ref|YP_003177232.1| - 0.17 12.2 0.2 0.41 11.0 0.0 1.7 2 0 0 2 2 1 0 AAA domain RNA_helicase PF00910.22 gi|257387459|ref|YP_003177232.1| - 0.18 12.2 0.0 0.3 11.5 0.0 1.3 1 0 0 1 1 1 0 RNA helicase BPD_transp_1 PF00528.22 gi|257387460|ref|YP_003177233.1| - 1.4e-15 57.5 15.2 1.4e-15 57.5 15.2 1.4 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_11 PF13531.6 gi|257387461|ref|YP_003177234.1| - 1.9e-26 93.3 0.3 2.1e-26 93.1 0.3 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|257387461|ref|YP_003177234.1| - 0.014 15.3 0.0 0.018 15.0 0.0 1.3 1 1 0 1 1 1 0 Bacterial extracellular solute-binding protein UCR_Fe-S_N PF10399.9 gi|257387461|ref|YP_003177234.1| - 0.29 10.5 2.0 0.84 9.0 2.0 1.8 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal TOBE PF03459.17 gi|257387462|ref|YP_003177235.1| - 3.6e-16 59.2 5.1 6e-16 58.5 1.7 2.6 2 0 0 2 2 2 1 TOBE domain HTH_1 PF00126.27 gi|257387462|ref|YP_003177235.1| - 4.1e-09 36.2 1.0 4.1e-09 36.2 1.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory helix-turn-helix protein, lysR family TOBE_2 PF08402.10 gi|257387462|ref|YP_003177235.1| - 0.00021 21.4 7.7 0.0024 18.0 0.6 2.8 2 1 0 2 2 2 2 TOBE domain DUF2089 PF09862.9 gi|257387462|ref|YP_003177235.1| - 0.08 13.0 0.0 0.17 11.9 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2089) HTH_20 PF12840.7 gi|257387462|ref|YP_003177235.1| - 0.11 12.5 3.4 1 9.5 0.7 2.5 2 0 0 2 2 2 0 Helix-turn-helix domain DUF1930 PF09122.10 gi|257387462|ref|YP_003177235.1| - 0.87 9.6 3.2 16 5.5 0.2 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF1930) AsnC_trans_reg PF01037.21 gi|257387463|ref|YP_003177236.1| - 3.8e-10 39.6 0.1 4.2e-10 39.4 0.1 1.0 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain Yip1 PF04893.17 gi|257387464|ref|YP_003177237.1| - 0.036 13.8 8.4 0.048 13.4 8.4 1.2 1 0 0 1 1 1 0 Yip1 domain Mem_trans PF03547.18 gi|257387464|ref|YP_003177237.1| - 0.14 10.5 3.8 0.15 10.4 3.8 1.0 1 0 0 1 1 1 0 Membrane transport protein NAD_binding_10 PF13460.6 gi|257387465|ref|YP_003177238.1| - 1.9e-30 106.1 0.1 2.9e-30 105.5 0.1 1.2 1 0 0 1 1 1 1 NAD(P)H-binding Epimerase PF01370.21 gi|257387465|ref|YP_003177238.1| - 4.4e-16 59.1 0.0 2.2e-15 56.8 0.0 1.9 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|257387465|ref|YP_003177238.1| - 1.8e-13 50.1 0.0 5.8e-12 45.2 0.0 2.1 1 1 1 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family NmrA PF05368.13 gi|257387465|ref|YP_003177238.1| - 2.5e-10 40.3 0.0 2.8e-10 40.1 0.0 1.2 1 0 0 1 1 1 1 NmrA-like family RmlD_sub_bind PF04321.17 gi|257387465|ref|YP_003177238.1| - 3.8e-10 39.3 0.0 0.00035 19.8 0.0 2.4 2 1 0 2 2 2 2 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|257387465|ref|YP_003177238.1| - 8.4e-07 28.4 0.0 0.0058 15.8 0.0 2.3 2 0 0 2 2 2 2 Male sterility protein GDP_Man_Dehyd PF16363.5 gi|257387465|ref|YP_003177238.1| - 1.2e-05 24.9 0.0 2.2e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase adh_short PF00106.25 gi|257387465|ref|YP_003177238.1| - 8.2e-05 22.1 0.0 0.00011 21.7 0.0 1.4 1 0 0 1 1 1 1 short chain dehydrogenase Glyco_trans_4_4 PF13579.6 gi|257387465|ref|YP_003177238.1| - 0.00045 20.7 0.3 0.0022 18.5 0.1 2.2 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.6 gi|257387465|ref|YP_003177238.1| - 0.00056 19.9 0.1 0.0024 17.9 0.0 1.9 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Polysacc_synt_2 PF02719.15 gi|257387465|ref|YP_003177238.1| - 0.0022 17.2 0.0 0.027 13.6 0.0 2.0 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_2 PF03446.15 gi|257387465|ref|YP_003177238.1| - 0.0073 16.5 0.0 0.021 15.0 0.0 1.7 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase Pyr_redox PF00070.27 gi|257387465|ref|YP_003177238.1| - 0.0093 16.5 0.0 0.024 15.2 0.0 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.18 gi|257387465|ref|YP_003177238.1| - 0.012 15.8 0.0 0.025 14.8 0.0 1.5 1 0 0 1 1 1 0 TrkA-N domain Pyr_redox_2 PF07992.14 gi|257387465|ref|YP_003177238.1| - 0.038 13.2 0.0 0.075 12.3 0.0 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase ApbA PF02558.16 gi|257387465|ref|YP_003177238.1| - 0.067 12.8 0.0 0.13 12.0 0.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA KR PF08659.10 gi|257387465|ref|YP_003177238.1| - 0.084 12.8 0.1 0.24 11.3 0.1 1.7 1 1 0 1 1 1 0 KR domain 3HCDH_N PF02737.18 gi|257387465|ref|YP_003177238.1| - 0.11 12.3 0.0 0.23 11.4 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DFP PF04127.15 gi|257387465|ref|YP_003177238.1| - 0.19 11.5 0.0 0.32 10.8 0.0 1.3 1 0 0 1 1 1 0 DNA / pantothenate metabolism flavoprotein Thymidylate_kin PF02223.17 gi|257387466|ref|YP_003177239.1| - 1.1e-38 132.8 0.0 1.2e-38 132.6 0.0 1.0 1 0 0 1 1 1 1 Thymidylate kinase AAA_33 PF13671.6 gi|257387466|ref|YP_003177239.1| - 1.3e-05 25.4 0.0 2.4e-05 24.5 0.0 1.5 1 1 0 1 1 1 1 AAA domain dNK PF01712.19 gi|257387466|ref|YP_003177239.1| - 0.00016 21.6 0.0 0.00076 19.4 0.0 1.9 1 1 0 1 1 1 1 Deoxynucleoside kinase AAA_18 PF13238.6 gi|257387466|ref|YP_003177239.1| - 0.00032 21.2 0.0 0.00092 19.8 0.0 1.9 1 1 0 1 1 1 1 AAA domain Herpes_TK PF00693.18 gi|257387466|ref|YP_003177239.1| - 0.042 13.1 0.0 0.061 12.5 0.0 1.2 1 0 0 1 1 1 0 Thymidine kinase from herpesvirus AAA_17 PF13207.6 gi|257387466|ref|YP_003177239.1| - 0.14 12.6 0.0 9.3 6.7 0.0 2.5 2 1 0 2 2 2 0 AAA domain Tubulin PF00091.25 gi|257387467|ref|YP_003177240.1| - 1.6e-28 100.2 0.1 2.6e-28 99.6 0.1 1.4 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.6 gi|257387467|ref|YP_003177240.1| - 0.0063 15.7 0.3 0.036 13.2 0.4 1.9 1 1 1 2 2 2 1 Tubulin like Mononeg_mRNAcap PF14318.6 gi|257387468|ref|YP_003177241.1| - 1.8e-05 24.1 0.2 2.8e-05 23.5 0.2 1.2 1 0 0 1 1 1 1 Mononegavirales mRNA-capping region V FliG_N PF14842.6 gi|257387468|ref|YP_003177241.1| - 0.021 15.3 0.2 0.053 14.1 0.2 1.7 1 0 0 1 1 1 0 FliG N-terminal domain DUF4366 PF14283.6 gi|257387468|ref|YP_003177241.1| - 0.029 14.4 1.1 0.066 13.3 0.1 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4366) DUF3693 PF12472.8 gi|257387468|ref|YP_003177241.1| - 0.21 11.3 1.5 0.62 9.8 1.5 1.8 1 0 0 1 1 1 0 Phage related protein PTS_IIA PF02255.16 gi|257387468|ref|YP_003177241.1| - 0.26 11.4 6.9 0.14 12.2 2.9 2.2 1 1 1 2 2 2 0 PTS system, Lactose/Cellobiose specific IIA subunit DUF1616 PF07760.11 gi|257387468|ref|YP_003177241.1| - 0.54 9.6 2.3 11 5.3 0.0 2.5 2 1 0 2 2 2 0 Protein of unknown function (DUF1616) CofC PF01983.16 gi|257387469|ref|YP_003177242.1| - 2.2e-41 141.4 0.0 2.5e-41 141.2 0.0 1.0 1 0 0 1 1 1 1 Guanylyl transferase CofC like NTP_transf_3 PF12804.7 gi|257387469|ref|YP_003177242.1| - 4.8e-06 27.0 4.4 6.6e-06 26.6 3.9 1.4 1 1 0 1 1 1 1 MobA-like NTP transferase domain Radical_SAM PF04055.21 gi|257387470|ref|YP_003177243.1| - 2.8e-14 53.8 0.1 5.3e-14 52.9 0.1 1.5 1 0 0 1 1 1 1 Radical SAM superfamily HTH_10 PF04967.12 gi|257387471|ref|YP_003177244.1| - 1.3e-14 53.7 0.1 2.2e-14 53.0 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.16 gi|257387471|ref|YP_003177244.1| - 0.0014 18.2 0.1 0.0054 16.2 0.0 2.1 2 1 0 2 2 2 1 Sigma-70, region 4 HTH_24 PF13412.6 gi|257387471|ref|YP_003177244.1| - 0.002 17.6 0.0 0.0037 16.8 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HrcA_DNA-bdg PF03444.15 gi|257387471|ref|YP_003177244.1| - 0.029 14.0 0.0 0.05 13.3 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_5 PF01022.20 gi|257387471|ref|YP_003177244.1| - 0.033 14.0 0.0 0.062 13.2 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family LexA_DNA_bind PF01726.16 gi|257387471|ref|YP_003177244.1| - 0.15 11.8 0.0 0.36 10.6 0.0 1.5 1 1 0 1 1 1 0 LexA DNA binding domain p450 PF00067.22 gi|257387472|ref|YP_003177245.1| - 2.5e-87 293.6 0.0 3e-87 293.3 0.0 1.0 1 0 0 1 1 1 1 Cytochrome P450 Umbravirus_LDM PF04817.12 gi|257387472|ref|YP_003177245.1| - 0.024 14.0 0.0 0.039 13.3 0.0 1.2 1 0 0 1 1 1 0 Umbravirus long distance movement (LDM) family Peptidase_M75 PF09375.10 gi|257387472|ref|YP_003177245.1| - 0.027 14.0 0.0 0.048 13.1 0.0 1.4 1 0 0 1 1 1 0 Imelysin Radical_SAM PF04055.21 gi|257387473|ref|YP_003177246.1| - 1.7e-12 48.1 0.0 3.7e-12 47.0 0.0 1.6 1 0 0 1 1 1 1 Radical SAM superfamily Na_Ca_ex PF01699.24 gi|257387474|ref|YP_003177247.1| - 3.2e-42 144.1 33.0 3.7e-22 78.9 14.8 2.0 2 0 0 2 2 2 2 Sodium/calcium exchanger protein SAICAR_synt PF01259.18 gi|257387475|ref|YP_003177248.1| - 1.2e-25 90.6 0.0 3.4e-25 89.1 0.0 1.6 1 1 0 1 1 1 1 SAICAR synthetase Formyl_trans_N PF00551.19 gi|257387476|ref|YP_003177249.1| - 9e-44 149.4 0.0 3.5e-43 147.4 0.0 1.8 2 0 0 2 2 2 1 Formyl transferase ACT_6 PF13740.6 gi|257387476|ref|YP_003177249.1| - 1.3e-09 37.9 0.4 3.4e-09 36.6 0.4 1.6 1 0 0 1 1 1 1 ACT domain ACT PF01842.25 gi|257387476|ref|YP_003177249.1| - 2.6e-05 23.9 0.4 0.00014 21.6 0.2 2.4 3 0 0 3 3 3 1 ACT domain ACT_4 PF13291.6 gi|257387476|ref|YP_003177249.1| - 0.00078 20.0 0.1 0.0021 18.6 0.1 1.7 1 0 0 1 1 1 1 ACT domain ASH PF15780.5 gi|257387477|ref|YP_003177250.1| - 0.006 16.8 0.1 0.021 15.0 0.1 1.9 1 0 0 1 1 1 1 Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin PKD PF00801.20 gi|257387477|ref|YP_003177250.1| - 0.045 13.6 10.0 0.05 13.5 1.5 2.8 2 0 0 2 2 2 0 PKD domain RAP1 PF07218.11 gi|257387477|ref|YP_003177250.1| - 3.3 5.9 7.1 4.4 5.4 7.1 1.1 1 0 0 1 1 1 0 Rhoptry-associated protein 1 (RAP-1) Mucin PF01456.17 gi|257387478|ref|YP_003177251.1| - 0.0016 18.4 5.0 0.0021 18.1 5.0 1.4 1 0 0 1 1 1 1 Mucin-like glycoprotein PurS PF02700.14 gi|257387480|ref|YP_003177253.1| - 2.6e-24 85.2 0.0 2.9e-24 85.0 0.0 1.0 1 0 0 1 1 1 1 Phosphoribosylformylglycinamidine (FGAM) synthase AP_endonuc_2 PF01261.24 gi|257387480|ref|YP_003177253.1| - 0.052 13.0 0.1 0.06 12.8 0.1 1.1 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel GATase_5 PF13507.6 gi|257387481|ref|YP_003177254.1| - 1.1e-44 152.5 0.0 1.4e-44 152.2 0.0 1.1 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain GATase PF00117.28 gi|257387481|ref|YP_003177254.1| - 3.5e-07 30.2 0.0 4.1e-07 29.9 0.0 1.3 1 1 0 1 1 1 1 Glutamine amidotransferase class-I GATase_3 PF07685.14 gi|257387481|ref|YP_003177254.1| - 7.1e-06 25.7 0.0 1.2e-05 25.1 0.0 1.4 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain DJ-1_PfpI PF01965.24 gi|257387481|ref|YP_003177254.1| - 0.00097 19.0 0.0 0.0013 18.6 0.0 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family LPD23 PF18838.1 gi|257387481|ref|YP_003177254.1| - 0.13 12.1 0.0 16 5.3 0.0 2.4 2 0 0 2 2 2 0 Large polyvalent protein associated domain 23 Peptidase_C26 PF07722.13 gi|257387481|ref|YP_003177254.1| - 0.15 11.8 0.1 0.27 11.0 0.1 1.4 1 1 0 1 1 1 0 Peptidase C26 DUF4013 PF13197.6 gi|257387482|ref|YP_003177255.1| - 4.7e-26 91.6 18.7 7.3e-26 91.0 18.7 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF4013) CTV_P6 PF06706.11 gi|257387482|ref|YP_003177255.1| - 0.82 9.4 5.1 0.52 10.1 0.9 2.4 2 0 0 2 2 2 0 Citrus tristeza virus 6-kDa protein Radical_SAM PF04055.21 gi|257387483|ref|YP_003177256.1| - 1e-05 26.0 0.0 1.9e-05 25.1 0.0 1.4 1 0 0 1 1 1 1 Radical SAM superfamily VanZ PF04892.12 gi|257387484|ref|YP_003177257.1| - 2.5e-05 24.9 0.6 3.3e-05 24.5 0.6 1.2 1 0 0 1 1 1 1 VanZ like family DUF2279 PF10043.9 gi|257387484|ref|YP_003177257.1| - 0.072 13.9 0.0 0.12 13.2 0.0 1.3 1 0 0 1 1 1 0 Predicted periplasmic lipoprotein (DUF2279) ABC_cobalt PF09819.9 gi|257387484|ref|YP_003177257.1| - 0.19 11.9 6.1 0.76 9.9 5.8 2.0 1 1 0 1 1 1 0 ABC-type cobalt transport system, permease component UDPG_MGDP_dh_N PF03721.14 gi|257387485|ref|YP_003177258.1| - 4.9e-55 186.0 0.0 7.4e-55 185.4 0.0 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 gi|257387485|ref|YP_003177258.1| - 1.2e-36 124.8 0.0 2.3e-36 123.9 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 gi|257387485|ref|YP_003177258.1| - 3.5e-25 88.5 0.1 9.5e-25 87.0 0.1 1.8 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ApbA PF02558.16 gi|257387485|ref|YP_003177258.1| - 0.00011 21.9 0.0 0.00019 21.1 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.18 gi|257387485|ref|YP_003177258.1| - 0.00018 21.5 0.0 0.00032 20.6 0.0 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|257387485|ref|YP_003177258.1| - 0.00044 20.3 0.0 0.00083 19.4 0.0 1.5 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus F420_oxidored PF03807.17 gi|257387485|ref|YP_003177258.1| - 0.0024 18.4 0.1 0.17 12.5 0.0 3.6 4 1 0 4 4 3 1 NADP oxidoreductase coenzyme F420-dependent Pyr_redox PF00070.27 gi|257387485|ref|YP_003177258.1| - 0.0048 17.4 0.2 0.034 14.7 0.1 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.18 gi|257387485|ref|YP_003177258.1| - 0.0065 16.7 0.5 0.092 13.0 0.0 2.9 3 0 0 3 3 3 1 TrkA-N domain Pyr_redox_2 PF07992.14 gi|257387485|ref|YP_003177258.1| - 0.012 14.9 0.1 0.019 14.2 0.1 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Rossmann-like PF10727.9 gi|257387485|ref|YP_003177258.1| - 0.025 14.4 0.2 0.057 13.3 0.2 1.6 1 0 0 1 1 1 0 Rossmann-like domain NAD_binding_8 PF13450.6 gi|257387485|ref|YP_003177258.1| - 0.044 14.0 0.1 0.11 12.7 0.1 1.8 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Semialdhyde_dh PF01118.24 gi|257387485|ref|YP_003177258.1| - 0.046 14.2 0.0 0.23 11.9 0.0 2.2 1 1 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain FAD_binding_3 PF01494.19 gi|257387485|ref|YP_003177258.1| - 0.059 12.6 0.1 0.095 11.9 0.1 1.3 1 0 0 1 1 1 0 FAD binding domain Epimerase PF01370.21 gi|257387485|ref|YP_003177258.1| - 0.12 11.8 0.1 0.31 10.5 0.0 1.7 2 0 0 2 2 2 0 NAD dependent epimerase/dehydratase family NTP_transferase PF00483.23 gi|257387486|ref|YP_003177259.1| - 3.7e-43 147.9 0.0 4.3e-43 147.7 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|257387486|ref|YP_003177259.1| - 1.4e-14 54.8 0.0 1.7e-14 54.5 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.19 gi|257387486|ref|YP_003177259.1| - 3.1e-06 27.1 0.0 3.2e-05 23.8 0.0 2.1 1 1 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase NRDD PF13597.6 gi|257387486|ref|YP_003177259.1| - 0.22 10.3 0.0 0.26 10.0 0.0 1.1 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase GDP_Man_Dehyd PF16363.5 gi|257387487|ref|YP_003177260.1| - 2.7e-69 234.1 0.0 3.3e-69 233.8 0.0 1.1 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Epimerase PF01370.21 gi|257387487|ref|YP_003177260.1| - 2.1e-64 217.3 0.1 2.5e-64 217.0 0.1 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|257387487|ref|YP_003177260.1| - 2.7e-28 98.8 0.0 3.5e-28 98.4 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|257387487|ref|YP_003177260.1| - 8.2e-20 71.1 0.2 1e-19 70.7 0.2 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain Polysacc_synt_2 PF02719.15 gi|257387487|ref|YP_003177260.1| - 8.4e-17 61.2 0.0 4.2e-16 58.9 0.0 1.8 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.6 gi|257387487|ref|YP_003177260.1| - 2.1e-13 50.6 0.2 4.5e-12 46.2 0.2 2.2 1 1 0 1 1 1 1 NAD(P)H-binding NAD_binding_4 PF07993.12 gi|257387487|ref|YP_003177260.1| - 4.9e-11 42.3 0.1 2.8e-10 39.8 0.1 2.2 1 1 0 1 1 1 1 Male sterility protein NmrA PF05368.13 gi|257387487|ref|YP_003177260.1| - 5.9e-09 35.8 0.0 7.7e-09 35.4 0.0 1.3 1 0 0 1 1 1 1 NmrA-like family KR PF08659.10 gi|257387487|ref|YP_003177260.1| - 9.5e-06 25.6 0.0 4e-05 23.6 0.0 1.9 1 1 0 1 1 1 1 KR domain adh_short PF00106.25 gi|257387487|ref|YP_003177260.1| - 7.4e-05 22.3 1.2 0.0017 17.9 0.1 3.1 3 2 1 4 4 4 1 short chain dehydrogenase 3HCDH_N PF02737.18 gi|257387487|ref|YP_003177260.1| - 0.024 14.5 0.1 0.12 12.2 0.0 2.1 2 1 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DUF5591 PF17884.1 gi|257387488|ref|YP_003177261.1| - 1.3e-58 197.2 0.0 2e-58 196.6 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF5591) TGT_C2 PF14810.6 gi|257387488|ref|YP_003177261.1| - 1.6e-21 76.2 0.2 4.7e-21 74.7 0.2 1.8 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase TGT PF01702.18 gi|257387488|ref|YP_003177261.1| - 1.3e-12 47.5 0.1 4.4e-12 45.8 0.1 1.8 1 1 0 1 1 1 1 Queuine tRNA-ribosyltransferase PUA PF01472.20 gi|257387488|ref|YP_003177261.1| - 3.8e-12 46.0 0.6 2e-10 40.5 0.3 2.4 2 0 0 2 2 2 1 PUA domain MbtH PF03621.13 gi|257387488|ref|YP_003177261.1| - 0.055 12.9 0.0 0.15 11.5 0.0 1.7 1 0 0 1 1 1 0 MbtH-like protein TGT PF01702.18 gi|257387489|ref|YP_003177262.1| - 6e-81 272.3 0.0 7.8e-81 271.9 0.0 1.1 1 0 0 1 1 1 1 Queuine tRNA-ribosyltransferase SIS_2 PF13580.6 gi|257387489|ref|YP_003177262.1| - 0.13 12.3 0.0 0.3 11.1 0.0 1.6 1 0 0 1 1 1 0 SIS domain PUA_3 PF17785.1 gi|257387489|ref|YP_003177262.1| - 0.19 11.5 0.0 0.91 9.4 0.0 2.0 2 0 0 2 2 2 0 PUA-like domain Glyco_trans_1_4 PF13692.6 gi|257387490|ref|YP_003177263.1| - 2.7e-23 82.9 0.1 2.1e-22 80.0 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|257387490|ref|YP_003177263.1| - 3.8e-19 68.9 0.0 1.2e-18 67.2 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|257387490|ref|YP_003177263.1| - 1.5e-12 47.8 0.3 5.1e-12 46.1 0.1 1.9 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|257387490|ref|YP_003177263.1| - 7.6e-07 29.7 3.4 6.7e-06 26.6 1.7 2.4 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Complex1_LYR PF05347.15 gi|257387490|ref|YP_003177263.1| - 0.12 12.4 2.2 3.8 7.6 0.0 2.7 3 0 0 3 3 3 0 Complex 1 protein (LYR family) Sulfatase PF00884.23 gi|257387491|ref|YP_003177264.1| - 3.4e-41 141.6 0.1 4.2e-41 141.3 0.1 1.1 1 0 0 1 1 1 1 Sulfatase DUF4994 PF16385.5 gi|257387491|ref|YP_003177264.1| - 2.9e-06 27.1 0.2 7.9e-05 22.5 0.2 2.5 1 1 0 1 1 1 1 Domain of unknown function Phosphodiest PF01663.22 gi|257387491|ref|YP_003177264.1| - 1.9e-05 24.4 1.6 0.0076 15.9 0.4 2.8 2 1 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF4976 PF16347.5 gi|257387491|ref|YP_003177264.1| - 3.8e-05 23.9 0.0 9.9e-05 22.5 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4976) DUF229 PF02995.17 gi|257387491|ref|YP_003177264.1| - 0.0071 15.0 0.0 0.012 14.2 0.0 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF229) Sulfatase_C PF14707.6 gi|257387491|ref|YP_003177264.1| - 0.031 15.0 0.3 0.11 13.2 0.4 1.9 1 1 1 2 2 2 0 C-terminal region of aryl-sulfatase PAS_9 PF13426.7 gi|257387492|ref|YP_003177265.1| - 9.4e-13 48.3 0.0 1.3e-12 47.9 0.0 1.2 1 0 0 1 1 1 1 PAS domain PAS PF00989.25 gi|257387492|ref|YP_003177265.1| - 7e-08 32.5 0.0 9.8e-08 32.0 0.0 1.3 1 0 0 1 1 1 1 PAS fold PAS_3 PF08447.12 gi|257387492|ref|YP_003177265.1| - 0.00015 22.0 0.0 0.00028 21.1 0.0 1.5 1 1 0 1 1 1 1 PAS fold PAS_4 PF08448.10 gi|257387492|ref|YP_003177265.1| - 0.0013 19.0 0.2 0.002 18.3 0.2 1.3 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 gi|257387492|ref|YP_003177265.1| - 0.0083 16.1 0.0 0.015 15.3 0.0 1.5 1 0 0 1 1 1 1 PAS domain TOBE PF03459.17 gi|257387493|ref|YP_003177266.1| - 0.0026 18.0 0.3 0.015 15.6 0.2 1.9 2 0 0 2 2 2 1 TOBE domain CRIM PF16978.5 gi|257387494|ref|YP_003177267.1| - 0.23 11.6 0.0 0.27 11.4 0.0 1.2 1 0 0 1 1 1 0 SAPK-interacting protein 1 (Sin1), middle CRIM domain FAD_binding_2 PF00890.24 gi|257387495|ref|YP_003177268.1| - 2.9e-91 306.6 9.2 3.7e-91 306.3 9.2 1.1 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.20 gi|257387495|ref|YP_003177268.1| - 6.5e-19 68.2 0.0 1.7e-18 66.8 0.0 1.6 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term DAO PF01266.24 gi|257387495|ref|YP_003177268.1| - 3.7e-08 33.4 6.6 2e-07 31.0 6.6 2.3 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|257387495|ref|YP_003177268.1| - 1.8e-07 30.7 0.9 0.0028 16.9 0.1 2.7 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|257387495|ref|YP_003177268.1| - 3.1e-05 22.9 2.0 0.092 11.4 0.5 3.1 3 0 0 3 3 3 2 HI0933-like protein Pyr_redox_3 PF13738.6 gi|257387495|ref|YP_003177268.1| - 6.4e-05 22.4 0.1 0.00017 21.0 0.1 1.7 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|257387495|ref|YP_003177268.1| - 7.4e-05 22.2 0.5 0.00012 21.5 0.5 1.3 1 0 0 1 1 1 1 FAD binding domain NAD_binding_8 PF13450.6 gi|257387495|ref|YP_003177268.1| - 0.0013 18.9 2.5 0.0037 17.5 1.4 2.4 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Shikimate_DH PF01488.20 gi|257387495|ref|YP_003177268.1| - 0.03 14.4 0.0 0.079 13.0 0.0 1.6 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase GARS_C PF02843.16 gi|257387495|ref|YP_003177268.1| - 0.051 13.9 0.1 3.3 8.0 0.0 2.7 2 0 0 2 2 2 0 Phosphoribosylglycinamide synthetase, C domain Thi4 PF01946.17 gi|257387495|ref|YP_003177268.1| - 0.15 11.3 2.7 2.9 7.0 0.3 2.4 2 0 0 2 2 2 0 Thi4 family GIDA PF01134.22 gi|257387495|ref|YP_003177268.1| - 0.82 8.7 7.2 0.038 13.1 0.6 2.0 3 0 0 3 3 3 0 Glucose inhibited division protein A DUF5357 PF17310.2 gi|257387496|ref|YP_003177269.1| - 0.016 13.8 0.4 0.018 13.6 0.4 1.0 1 0 0 1 1 1 0 Family of unknown function (DUF5357) DUF4345 PF14248.6 gi|257387497|ref|YP_003177270.1| - 0.00018 21.4 0.3 0.0002 21.2 0.3 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4345) MFS_1 PF07690.16 gi|257387497|ref|YP_003177270.1| - 0.0022 17.0 0.1 0.0022 17.0 0.1 1.0 1 0 0 1 1 1 1 Major Facilitator Superfamily NUDIX PF00293.28 gi|257387499|ref|YP_003177272.1| - 5e-14 52.5 0.7 6.9e-14 52.0 0.7 1.2 1 0 0 1 1 1 1 NUDIX domain NPP1 PF05630.11 gi|257387500|ref|YP_003177273.1| - 0.13 12.4 0.1 0.22 11.6 0.1 1.3 1 0 0 1 1 1 0 Necrosis inducing protein (NPP1) UCR_Fe-S_N PF10399.9 gi|257387500|ref|YP_003177273.1| - 0.14 11.5 1.3 0.32 10.4 1.3 1.6 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal PQQ_3 PF13570.6 gi|257387501|ref|YP_003177274.1| - 2.6e-47 158.1 36.0 3.3e-10 40.1 1.2 8.3 8 0 0 8 8 8 8 PQQ-like domain PQQ_2 PF13360.6 gi|257387501|ref|YP_003177274.1| - 2.5e-38 132.0 11.5 9.8e-17 61.3 0.4 4.1 1 1 1 3 3 3 3 PQQ-like domain PQQ PF01011.21 gi|257387501|ref|YP_003177274.1| - 4.2e-30 102.2 14.2 5.9e-09 35.4 0.2 7.8 8 0 0 8 8 8 4 PQQ enzyme repeat PGDYG PF14083.6 gi|257387501|ref|YP_003177274.1| - 0.0098 16.1 0.1 0.023 14.9 0.1 1.7 1 0 0 1 1 1 1 PGDYG protein Methyltrn_RNA_2 PF04013.12 gi|257387502|ref|YP_003177275.1| - 2.4e-62 210.2 0.0 2.7e-62 210.0 0.0 1.0 1 0 0 1 1 1 1 Putative SAM-dependent RNA methyltransferase Glyoxalase PF00903.25 gi|257387503|ref|YP_003177276.1| - 8e-30 103.7 0.5 2.2e-15 57.0 0.0 2.4 2 0 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|257387503|ref|YP_003177276.1| - 6.3e-05 23.2 0.0 0.44 10.9 0.0 3.2 1 1 1 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.6 gi|257387503|ref|YP_003177276.1| - 0.11 12.6 4.1 2.8 8.0 0.1 3.1 2 1 2 4 4 4 0 Glyoxalase-like domain Abhydrolase_2 PF02230.16 gi|257387504|ref|YP_003177277.1| - 2.4e-18 66.8 0.0 9.4e-18 64.8 0.0 1.7 1 1 0 1 1 1 1 Phospholipase/Carboxylesterase Hydrolase_4 PF12146.8 gi|257387504|ref|YP_003177277.1| - 1.9e-10 40.4 0.5 2.2e-05 23.8 0.2 2.3 1 1 1 2 2 2 2 Serine aminopeptidase, S33 Esterase_phd PF10503.9 gi|257387504|ref|YP_003177277.1| - 7.3e-09 35.4 2.9 1.2e-07 31.5 2.9 2.1 1 1 0 1 1 1 1 Esterase PHB depolymerase DLH PF01738.18 gi|257387504|ref|YP_003177277.1| - 1.1e-07 31.7 0.0 1.2e-07 31.5 0.0 1.2 1 0 0 1 1 1 1 Dienelactone hydrolase family Esterase PF00756.20 gi|257387504|ref|YP_003177277.1| - 7.7e-07 29.0 0.1 1.2e-06 28.4 0.1 1.6 1 1 0 1 1 1 1 Putative esterase Abhydrolase_1 PF00561.20 gi|257387504|ref|YP_003177277.1| - 5.6e-06 26.2 0.1 0.0047 16.6 0.1 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Peptidase_S9 PF00326.21 gi|257387504|ref|YP_003177277.1| - 1.1e-05 25.0 0.2 0.065 12.7 0.0 2.5 3 0 0 3 3 3 2 Prolyl oligopeptidase family Abhydrolase_3 PF07859.13 gi|257387504|ref|YP_003177277.1| - 3.1e-05 23.9 0.5 0.092 12.6 0.1 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold FSH1 PF03959.13 gi|257387504|ref|YP_003177277.1| - 0.00018 21.3 0.0 0.00045 19.9 0.0 1.7 1 1 0 1 1 1 1 Serine hydrolase (FSH1) Abhydrolase_6 PF12697.7 gi|257387504|ref|YP_003177277.1| - 0.0023 18.6 9.2 0.0083 16.7 9.2 1.7 1 1 0 1 1 1 1 Alpha/beta hydrolase family Chlorophyllase2 PF12740.7 gi|257387504|ref|YP_003177277.1| - 0.0034 16.3 0.0 0.0045 15.9 0.0 1.1 1 0 0 1 1 1 1 Chlorophyllase enzyme Abhydrolase_4 PF08386.10 gi|257387504|ref|YP_003177277.1| - 0.018 15.1 0.0 0.034 14.3 0.0 1.4 1 0 0 1 1 1 0 TAP-like protein Chlorophyllase PF07224.11 gi|257387504|ref|YP_003177277.1| - 0.021 13.8 0.0 0.026 13.5 0.0 1.1 1 0 0 1 1 1 0 Chlorophyllase PE-PPE PF08237.11 gi|257387504|ref|YP_003177277.1| - 0.086 12.4 0.0 0.12 11.9 0.0 1.3 1 0 0 1 1 1 0 PE-PPE domain Bac_transf PF02397.16 gi|257387505|ref|YP_003177278.1| - 8.6e-61 204.7 0.0 1.3e-60 204.2 0.0 1.3 1 0 0 1 1 1 1 Bacterial sugar transferase DUF1970 PF09301.10 gi|257387505|ref|YP_003177278.1| - 3.3e-11 43.4 0.0 7.7e-11 42.2 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1970) Ycf66_N PF07444.11 gi|257387505|ref|YP_003177278.1| - 0.073 13.2 0.1 0.073 13.2 0.1 2.6 3 1 0 3 3 3 0 Ycf66 protein N-terminus Sulfatase PF00884.23 gi|257387506|ref|YP_003177279.1| - 3.4e-35 121.9 0.0 4.6e-35 121.5 0.0 1.2 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 gi|257387506|ref|YP_003177279.1| - 5.5e-10 39.4 0.1 1.9e-05 24.4 0.0 2.2 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF229 PF02995.17 gi|257387506|ref|YP_003177279.1| - 0.00029 19.6 0.0 0.00044 19.0 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF229) Metalloenzyme PF01676.18 gi|257387506|ref|YP_003177279.1| - 0.018 14.4 0.0 0.033 13.5 0.0 1.4 1 0 0 1 1 1 0 Metalloenzyme superfamily ABC_tran PF00005.27 gi|257387507|ref|YP_003177280.1| - 3.7e-32 111.7 0.0 6.5e-32 110.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter ABC_membrane PF00664.23 gi|257387507|ref|YP_003177280.1| - 6.5e-09 35.8 6.0 9e-09 35.4 6.0 1.2 1 0 0 1 1 1 1 ABC transporter transmembrane region SMC_N PF02463.19 gi|257387507|ref|YP_003177280.1| - 3e-07 30.1 3.8 5.9e-07 29.2 0.4 1.9 1 1 0 2 2 2 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|257387507|ref|YP_003177280.1| - 5e-05 23.3 0.0 0.00011 22.1 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase DUF4386 PF14329.6 gi|257387507|ref|YP_003177280.1| - 0.0074 16.2 2.6 0.0074 16.2 2.6 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4386) MeaB PF03308.16 gi|257387507|ref|YP_003177280.1| - 0.0095 14.9 0.0 0.023 13.7 0.0 1.6 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_29 PF13555.6 gi|257387507|ref|YP_003177280.1| - 0.013 15.2 0.0 0.029 14.1 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_24 PF13479.6 gi|257387507|ref|YP_003177280.1| - 0.016 15.0 0.0 0.029 14.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_22 PF13401.6 gi|257387507|ref|YP_003177280.1| - 0.016 15.5 0.4 0.14 12.5 0.4 2.4 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|257387507|ref|YP_003177280.1| - 0.016 15.5 0.0 0.068 13.6 0.0 2.1 2 0 0 2 2 1 0 RNA helicase NTPase_1 PF03266.15 gi|257387507|ref|YP_003177280.1| - 0.017 15.1 0.5 5.5 6.9 0.0 2.5 3 0 0 3 3 3 0 NTPase AAA_16 PF13191.6 gi|257387507|ref|YP_003177280.1| - 0.03 14.7 0.1 0.091 13.1 0.1 2.0 1 1 0 1 1 1 0 AAA ATPase domain MMR_HSR1 PF01926.23 gi|257387507|ref|YP_003177280.1| - 0.031 14.4 0.0 0.11 12.6 0.0 2.0 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_30 PF13604.6 gi|257387507|ref|YP_003177280.1| - 0.038 13.7 0.5 0.53 10.0 0.0 2.2 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.12 gi|257387507|ref|YP_003177280.1| - 0.046 13.0 0.1 0.37 10.0 0.0 2.2 2 0 0 2 2 2 0 Zeta toxin Virul_Fac PF10139.9 gi|257387507|ref|YP_003177280.1| - 0.058 11.6 0.1 0.098 10.9 0.1 1.2 1 0 0 1 1 1 0 Putative bacterial virulence factor AAA_18 PF13238.6 gi|257387507|ref|YP_003177280.1| - 0.078 13.5 0.0 0.23 12.0 0.0 1.9 1 0 0 1 1 1 0 AAA domain Glycos_transf_2 PF00535.26 gi|257387508|ref|YP_003177281.1| - 2e-21 76.5 0.1 2.6e-21 76.2 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|257387508|ref|YP_003177281.1| - 9.5e-16 58.4 0.0 1.4e-15 57.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|257387508|ref|YP_003177281.1| - 0.00041 19.9 0.0 0.0034 16.9 0.0 1.9 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|257387508|ref|YP_003177281.1| - 0.038 13.9 0.1 0.13 12.2 0.1 1.7 1 1 0 1 1 1 0 Glycosyl transferase family group 2 NeuB PF03102.14 gi|257387509|ref|YP_003177282.1| - 1.7e-87 292.9 0.0 2e-87 292.7 0.0 1.1 1 0 0 1 1 1 1 NeuB family SAF PF08666.12 gi|257387509|ref|YP_003177282.1| - 5.4e-10 39.8 0.1 1e-09 38.9 0.1 1.5 1 0 0 1 1 1 1 SAF domain PIG-L PF02585.17 gi|257387510|ref|YP_003177283.1| - 2.3e-22 80.0 3.1 3.1e-22 79.6 3.1 1.2 1 0 0 1 1 1 1 GlcNAc-PI de-N-acetylase Hexapep PF00132.24 gi|257387511|ref|YP_003177284.1| - 2.8e-16 58.5 14.0 8.4e-08 31.6 3.8 4.0 3 1 1 4 4 4 3 Bacterial transferase hexapeptide (six repeats) PglD_N PF17836.1 gi|257387511|ref|YP_003177284.1| - 2.9e-11 43.8 0.8 5e-11 43.1 0.0 1.7 2 0 0 2 2 2 1 PglD N-terminal domain Hexapep_2 PF14602.6 gi|257387511|ref|YP_003177284.1| - 4.6e-08 32.7 8.6 2.9e-06 26.9 2.9 3.7 2 2 1 3 3 3 3 Hexapeptide repeat of succinyl-transferase Methyltransf_25 PF13649.6 gi|257387512|ref|YP_003177285.1| - 1.7e-20 73.5 0.0 3.2e-20 72.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|257387512|ref|YP_003177285.1| - 3.3e-20 72.4 0.0 5e-20 71.8 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|257387512|ref|YP_003177285.1| - 4e-20 72.3 0.0 6.9e-20 71.5 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|257387512|ref|YP_003177285.1| - 8e-19 68.1 0.0 1.1e-18 67.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|257387512|ref|YP_003177285.1| - 2.5e-12 47.4 0.0 4.2e-12 46.7 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain CMAS PF02353.20 gi|257387512|ref|YP_003177285.1| - 1.5e-11 44.2 0.0 1.7e-11 43.9 0.0 1.0 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase TehB PF03848.14 gi|257387512|ref|YP_003177285.1| - 2e-07 30.6 0.0 2.7e-07 30.2 0.0 1.2 1 0 0 1 1 1 1 Tellurite resistance protein TehB MetW PF07021.12 gi|257387512|ref|YP_003177285.1| - 2.3e-07 30.6 0.0 3.6e-07 30.0 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Ubie_methyltran PF01209.18 gi|257387512|ref|YP_003177285.1| - 2.3e-06 27.1 0.0 3.2e-06 26.6 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family MTS PF05175.14 gi|257387512|ref|YP_003177285.1| - 5.9e-06 25.9 0.0 9.6e-06 25.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain NodS PF05401.11 gi|257387512|ref|YP_003177285.1| - 5e-05 23.0 0.0 6.8e-05 22.6 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) TPMT PF05724.11 gi|257387512|ref|YP_003177285.1| - 8.7e-05 22.3 0.0 0.00014 21.6 0.0 1.3 1 0 0 1 1 1 1 Thiopurine S-methyltransferase (TPMT) PrmA PF06325.13 gi|257387512|ref|YP_003177285.1| - 0.0013 18.2 0.0 0.0019 17.7 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_29 PF03141.16 gi|257387512|ref|YP_003177285.1| - 0.0014 17.2 0.0 0.0018 16.9 0.0 1.1 1 0 0 1 1 1 1 Putative S-adenosyl-L-methionine-dependent methyltransferase FtsJ PF01728.19 gi|257387512|ref|YP_003177285.1| - 0.0025 17.9 0.0 0.0038 17.4 0.0 1.2 1 0 0 1 1 1 1 FtsJ-like methyltransferase AdoMet_MTase PF07757.13 gi|257387512|ref|YP_003177285.1| - 0.011 16.1 0.1 0.088 13.1 0.0 2.4 3 1 0 3 3 2 0 Predicted AdoMet-dependent methyltransferase Methyltransf_32 PF13679.6 gi|257387512|ref|YP_003177285.1| - 0.012 15.6 0.0 0.02 14.9 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_9 PF08003.11 gi|257387512|ref|YP_003177285.1| - 0.044 12.7 0.0 0.1 11.5 0.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1698) Pox_MCEL PF03291.16 gi|257387512|ref|YP_003177285.1| - 0.077 12.1 0.0 0.11 11.6 0.0 1.2 1 0 0 1 1 1 0 mRNA capping enzyme DUF938 PF06080.12 gi|257387512|ref|YP_003177285.1| - 0.1 12.4 0.0 0.14 11.9 0.0 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF938) Epimerase_2 PF02350.19 gi|257387514|ref|YP_003177287.1| - 4.4e-72 242.8 0.0 5e-72 242.7 0.0 1.0 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase AP_endonuc_2 PF01261.24 gi|257387514|ref|YP_003177287.1| - 0.037 13.4 1.3 2.2 7.7 0.0 2.6 2 1 0 2 2 2 0 Xylose isomerase-like TIM barrel ATP-grasp_3 PF02655.14 gi|257387515|ref|YP_003177288.1| - 6.4e-19 68.6 0.0 8.4e-19 68.2 0.0 1.2 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_Ter PF15632.6 gi|257387515|ref|YP_003177288.1| - 5.2e-17 61.8 0.0 9.4e-17 61.0 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon CPSase_L_D2 PF02786.17 gi|257387515|ref|YP_003177288.1| - 0.00018 21.1 0.0 0.19 11.2 0.0 2.6 2 1 1 3 3 3 2 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_4 PF13535.6 gi|257387515|ref|YP_003177288.1| - 0.00035 20.2 0.0 0.071 12.7 0.0 2.5 1 1 0 1 1 1 1 ATP-grasp domain GARS_N PF02844.15 gi|257387515|ref|YP_003177288.1| - 0.019 15.7 0.1 0.44 11.3 0.1 2.6 3 1 1 4 4 4 0 Phosphoribosylglycinamide synthetase, N domain Dala_Dala_lig_C PF07478.13 gi|257387515|ref|YP_003177288.1| - 0.022 14.3 0.0 0.036 13.6 0.0 1.3 1 0 0 1 1 1 0 D-ala D-ala ligase C-terminus HAD_2 PF13419.6 gi|257387516|ref|YP_003177289.1| - 4.4e-34 118.1 0.0 6.1e-34 117.6 0.0 1.2 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|257387516|ref|YP_003177289.1| - 1.3e-16 61.5 0.1 6.9e-16 59.2 0.1 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|257387516|ref|YP_003177289.1| - 1.1e-10 42.3 0.1 1.4e-10 41.9 0.1 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|257387516|ref|YP_003177289.1| - 4.8e-10 39.4 0.0 1e-09 38.3 0.0 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase_6 PF13344.6 gi|257387516|ref|YP_003177289.1| - 0.0027 17.8 0.0 0.018 15.2 0.0 2.2 3 0 0 3 3 3 1 Haloacid dehalogenase-like hydrolase Acid_PPase PF12689.7 gi|257387516|ref|YP_003177289.1| - 0.0044 16.9 0.1 0.063 13.1 0.1 2.1 1 1 0 1 1 1 1 Acid Phosphatase adh_short_C2 PF13561.6 gi|257387517|ref|YP_003177290.1| - 5.5e-48 163.6 0.1 1.1e-47 162.6 0.1 1.4 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|257387517|ref|YP_003177290.1| - 3.5e-33 114.7 0.2 1.1e-32 113.1 0.2 1.7 1 1 0 1 1 1 1 short chain dehydrogenase Epimerase PF01370.21 gi|257387517|ref|YP_003177290.1| - 6e-08 32.4 0.1 8.3e-08 32.0 0.1 1.3 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family KR PF08659.10 gi|257387517|ref|YP_003177290.1| - 1.4e-07 31.7 0.1 2.5e-07 30.8 0.1 1.3 1 0 0 1 1 1 1 KR domain Sacchrp_dh_NADP PF03435.18 gi|257387517|ref|YP_003177290.1| - 2.9e-05 24.4 0.1 6.4e-05 23.2 0.1 1.5 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain RmlD_sub_bind PF04321.17 gi|257387517|ref|YP_003177290.1| - 0.00047 19.3 0.1 0.015 14.5 0.1 2.2 2 0 0 2 2 2 1 RmlD substrate binding domain 3HCDH_N PF02737.18 gi|257387517|ref|YP_003177290.1| - 0.0053 16.7 0.2 0.0081 16.1 0.2 1.2 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3Beta_HSD PF01073.19 gi|257387517|ref|YP_003177290.1| - 0.0057 15.7 0.1 0.0091 15.0 0.1 1.3 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family GDP_Man_Dehyd PF16363.5 gi|257387517|ref|YP_003177290.1| - 0.023 14.1 0.0 0.033 13.6 0.0 1.2 1 0 0 1 1 1 0 GDP-mannose 4,6 dehydratase Big_6 PF17936.1 gi|257387517|ref|YP_003177290.1| - 0.031 14.5 0.4 0.081 13.2 0.4 1.7 1 0 0 1 1 1 0 Bacterial Ig domain UDPG_MGDP_dh_C PF03720.15 gi|257387517|ref|YP_003177290.1| - 0.089 13.2 0.0 0.16 12.4 0.0 1.5 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Shikimate_DH PF01488.20 gi|257387517|ref|YP_003177290.1| - 0.11 12.6 0.0 0.21 11.7 0.0 1.5 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.17 gi|257387517|ref|YP_003177290.1| - 0.15 12.6 0.3 0.27 11.8 0.3 1.4 1 0 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent NAD_binding_4 PF07993.12 gi|257387517|ref|YP_003177290.1| - 0.17 11.0 0.3 4.5 6.4 0.0 2.1 1 1 1 2 2 2 0 Male sterility protein CTP_transf_3 PF02348.19 gi|257387518|ref|YP_003177291.1| - 1.7e-19 70.6 0.0 2e-19 70.4 0.0 1.1 1 0 0 1 1 1 1 Cytidylyltransferase Tir_receptor_M PF03549.14 gi|257387518|ref|YP_003177291.1| - 0.012 15.9 0.0 0.029 14.7 0.0 1.6 1 0 0 1 1 1 0 Translocated intimin receptor (Tir) intimin-binding domain NTP_transf_3 PF12804.7 gi|257387518|ref|YP_003177291.1| - 0.03 14.7 0.0 0.047 14.1 0.0 1.4 1 1 0 1 1 1 0 MobA-like NTP transferase domain GFO_IDH_MocA PF01408.22 gi|257387519|ref|YP_003177292.1| - 1.2e-12 48.8 0.0 1e-11 45.7 0.0 2.4 2 1 0 2 2 2 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|257387519|ref|YP_003177292.1| - 0.009 16.0 0.0 0.015 15.3 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain Cuticle_1 PF08140.11 gi|257387519|ref|YP_003177292.1| - 0.037 14.1 0.3 31 4.7 0.0 3.1 3 0 0 3 3 3 0 Crustacean cuticle protein repeat Gp_dh_N PF00044.24 gi|257387519|ref|YP_003177292.1| - 0.052 13.9 0.0 0.12 12.7 0.0 1.6 1 0 0 1 1 1 0 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DegT_DnrJ_EryC1 PF01041.17 gi|257387520|ref|YP_003177293.1| - 4.2e-116 388.2 0.0 4.9e-116 388.0 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.21 gi|257387520|ref|YP_003177293.1| - 2.4e-09 36.8 0.0 3.7e-09 36.2 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|257387520|ref|YP_003177293.1| - 8e-06 25.3 0.0 1.9e-05 24.1 0.0 1.5 1 1 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.20 gi|257387520|ref|YP_003177293.1| - 7.7e-05 21.4 0.0 0.00011 20.8 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme OKR_DC_1 PF01276.20 gi|257387520|ref|YP_003177293.1| - 0.15 10.7 0.0 0.21 10.3 0.0 1.1 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain SelA PF03841.13 gi|257387520|ref|YP_003177293.1| - 0.17 10.9 0.0 2.8 6.8 0.0 2.4 3 0 0 3 3 3 0 L-seryl-tRNA selenium transferase Polysacc_synt_2 PF02719.15 gi|257387521|ref|YP_003177294.1| - 1.5e-101 339.5 0.0 1.7e-101 339.3 0.0 1.0 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein Epimerase PF01370.21 gi|257387521|ref|YP_003177294.1| - 3.4e-25 88.9 0.0 7.8e-24 84.5 0.0 2.6 2 1 0 2 2 2 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|257387521|ref|YP_003177294.1| - 2.4e-21 76.0 0.1 4.2e-20 71.9 0.1 2.1 1 1 1 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family GDP_Man_Dehyd PF16363.5 gi|257387521|ref|YP_003177294.1| - 5.2e-19 68.8 0.1 1.3e-18 67.5 0.0 1.7 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase RmlD_sub_bind PF04321.17 gi|257387521|ref|YP_003177294.1| - 4.2e-12 45.8 0.0 1.2e-10 40.9 0.0 2.2 1 1 0 1 1 1 1 RmlD substrate binding domain NAD_binding_10 PF13460.6 gi|257387521|ref|YP_003177294.1| - 8.8e-10 38.8 0.1 1.4e-09 38.1 0.1 1.3 1 0 0 1 1 1 1 NAD(P)H-binding NAD_binding_4 PF07993.12 gi|257387521|ref|YP_003177294.1| - 6.3e-08 32.1 0.5 9.9e-07 28.2 0.6 2.4 1 1 1 2 2 2 1 Male sterility protein adh_short PF00106.25 gi|257387521|ref|YP_003177294.1| - 1.1e-07 31.5 0.0 2.2e-07 30.5 0.0 1.5 1 0 0 1 1 1 1 short chain dehydrogenase NmrA PF05368.13 gi|257387521|ref|YP_003177294.1| - 6.9e-05 22.5 0.0 0.00011 21.9 0.0 1.3 1 0 0 1 1 1 1 NmrA-like family F420_oxidored PF03807.17 gi|257387521|ref|YP_003177294.1| - 0.0023 18.5 0.0 0.0076 16.8 0.0 1.9 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent TrkA_N PF02254.18 gi|257387521|ref|YP_003177294.1| - 0.0066 16.7 0.6 0.039 14.2 0.3 2.2 1 1 1 2 2 2 1 TrkA-N domain Sacchrp_dh_NADP PF03435.18 gi|257387521|ref|YP_003177294.1| - 0.0073 16.6 0.0 0.018 15.3 0.0 1.7 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain KR PF08659.10 gi|257387521|ref|YP_003177294.1| - 0.026 14.4 0.2 0.077 12.9 0.2 1.7 1 1 0 1 1 1 0 KR domain Pro-rich_19 PF15455.6 gi|257387521|ref|YP_003177294.1| - 0.059 12.5 0.0 0.11 11.7 0.0 1.3 1 0 0 1 1 1 0 Proline-rich 19 Methyltransf_11 PF08241.12 gi|257387521|ref|YP_003177294.1| - 0.073 13.7 0.0 0.16 12.7 0.0 1.5 1 0 0 1 1 1 0 Methyltransferase domain Sulfatase PF00884.23 gi|257387522|ref|YP_003177295.1| - 0.083 12.3 0.0 0.11 11.9 0.0 1.2 1 0 0 1 1 1 0 Sulfatase Wzy_C PF04932.15 gi|257387523|ref|YP_003177296.1| - 3.5e-12 46.2 5.8 3.5e-12 46.2 5.8 3.7 2 1 0 2 2 2 1 O-Antigen ligase DDE_Tnp_IS1595 PF12762.7 gi|257387525|ref|YP_003177298.1| - 2.9e-22 79.3 0.0 4.1e-22 78.8 0.0 1.2 1 0 0 1 1 1 1 ISXO2-like transposase domain Zn_Tnp_IS1595 PF12760.7 gi|257387525|ref|YP_003177298.1| - 3.9e-10 39.5 0.9 8e-10 38.5 0.9 1.6 1 0 0 1 1 1 1 Transposase zinc-ribbon domain DUF2089 PF09862.9 gi|257387525|ref|YP_003177298.1| - 5.9e-07 29.5 0.0 1e-06 28.8 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2089) Zn_Tnp_IS1 PF03811.13 gi|257387525|ref|YP_003177298.1| - 1.5e-05 24.6 4.0 3.8e-05 23.3 4.0 1.7 1 0 0 1 1 1 1 InsA N-terminal domain TackOD1 PF18551.1 gi|257387525|ref|YP_003177298.1| - 0.007 16.1 0.2 0.011 15.4 0.2 1.2 1 0 0 1 1 1 1 Thaumarchaeal output domain 1 Zn-ribbon_8 PF09723.10 gi|257387525|ref|YP_003177298.1| - 0.017 15.2 0.5 3.1 8.0 0.1 2.5 2 0 0 2 2 2 0 Zinc ribbon domain HTH_23 PF13384.6 gi|257387525|ref|YP_003177298.1| - 0.023 14.5 0.0 0.082 12.7 0.0 1.9 1 0 0 1 1 1 0 Homeodomain-like domain HTH_29 PF13551.6 gi|257387525|ref|YP_003177298.1| - 0.023 14.7 0.1 0.094 12.7 0.1 2.0 1 0 0 1 1 1 0 Winged helix-turn helix ADK_lid PF05191.14 gi|257387525|ref|YP_003177298.1| - 0.041 13.9 2.6 0.041 13.9 0.1 2.1 2 0 0 2 2 2 0 Adenylate kinase, active site lid GerE PF00196.19 gi|257387525|ref|YP_003177298.1| - 0.041 13.4 0.0 0.085 12.4 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family zf-C4_Topoisom PF01396.19 gi|257387525|ref|YP_003177298.1| - 0.047 13.5 1.3 0.094 12.5 1.3 1.5 1 0 0 1 1 1 0 Topoisomerase DNA binding C4 zinc finger Sigma70_r4_2 PF08281.12 gi|257387525|ref|YP_003177298.1| - 0.099 12.3 0.0 0.3 10.8 0.0 1.8 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_11 PF08279.12 gi|257387525|ref|YP_003177298.1| - 0.1 12.6 0.0 0.2 11.6 0.0 1.5 1 0 0 1 1 1 0 HTH domain zinc-ribbons_6 PF07191.12 gi|257387525|ref|YP_003177298.1| - 0.11 12.4 0.3 0.2 11.6 0.3 1.4 1 0 0 1 1 1 0 zinc-ribbons Lar_restr_allev PF14354.6 gi|257387525|ref|YP_003177298.1| - 0.12 12.8 0.1 0.26 11.7 0.1 1.5 1 0 0 1 1 1 0 Restriction alleviation protein Lar zf-Dof PF02701.15 gi|257387525|ref|YP_003177298.1| - 0.18 12.0 3.5 0.37 11.0 3.5 1.5 1 0 0 1 1 1 0 Dof domain, zinc finger zf-C2H2_4 PF13894.6 gi|257387525|ref|YP_003177298.1| - 0.46 11.5 3.6 1.1 10.3 0.2 3.1 3 0 0 3 3 3 0 C2H2-type zinc finger zf-ISL3 PF14690.6 gi|257387525|ref|YP_003177298.1| - 0.84 10.4 5.8 7.6 7.3 0.2 2.9 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn_ribbon_recom PF13408.6 gi|257387525|ref|YP_003177298.1| - 2 9.0 6.4 2.3 8.8 4.8 2.0 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain zf-C2HC_2 PF13913.6 gi|257387525|ref|YP_003177298.1| - 4.9 7.2 8.0 0.23 11.4 1.4 2.1 2 0 0 2 2 2 0 zinc-finger of a C2HC-type PglZ PF08665.12 gi|257387526|ref|YP_003177299.1| - 0.041 14.0 0.0 0.18 11.9 0.0 1.9 2 0 0 2 2 2 0 PglZ domain AglB_L1 PF18079.1 gi|257387528|ref|YP_003177301.1| - 1.5e-08 34.8 4.7 4.2e-07 30.2 4.7 2.6 1 1 0 1 1 1 1 Archaeal glycosylation protein B long peripheral domain STT3 PF02516.14 gi|257387528|ref|YP_003177301.1| - 1.8e-07 30.5 9.1 3.4e-07 29.5 9.1 1.5 1 0 0 1 1 1 1 Oligosaccharyl transferase STT3 subunit Dpy19 PF10034.9 gi|257387528|ref|YP_003177301.1| - 0.012 13.8 0.3 0.016 13.4 0.3 1.1 1 0 0 1 1 1 0 Q-cell neuroblast polarisation PMT PF02366.18 gi|257387528|ref|YP_003177301.1| - 0.018 14.6 7.7 0.051 13.1 7.7 1.8 1 0 0 1 1 1 0 Dolichyl-phosphate-mannose-protein mannosyltransferase CarboxypepD_reg PF13620.6 gi|257387528|ref|YP_003177301.1| - 0.085 13.1 8.9 0.049 13.9 5.6 2.4 2 0 0 2 2 2 0 Carboxypeptidase regulatory-like domain DUF4330 PF14221.6 gi|257387529|ref|YP_003177302.1| - 5.5e-25 88.5 18.1 5.3e-12 46.3 0.0 5.4 4 2 0 4 4 4 4 Domain of unknown function (DUF4330) HlyD_3 PF13437.6 gi|257387529|ref|YP_003177302.1| - 0.0069 17.1 6.5 1.3 9.8 0.0 4.4 3 1 2 5 5 5 2 HlyD family secretion protein NPL PF17800.1 gi|257387529|ref|YP_003177302.1| - 0.11 13.1 0.1 0.92 10.1 0.1 2.4 1 1 0 1 1 1 0 Nucleoplasmin-like domain MlaD PF02470.20 gi|257387529|ref|YP_003177302.1| - 0.16 12.3 7.1 1.2 9.5 0.6 3.9 3 2 1 4 4 4 0 MlaD protein HTH_20 PF12840.7 gi|257387531|ref|YP_003177304.1| - 0.00037 20.5 0.0 0.00072 19.6 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|257387531|ref|YP_003177304.1| - 0.018 14.9 0.0 0.12 12.2 0.0 2.5 3 0 0 3 3 3 0 AsnC-type helix-turn-helix domain Dimerisation2 PF16864.5 gi|257387531|ref|YP_003177304.1| - 0.038 14.0 0.0 0.067 13.2 0.0 1.3 1 0 0 1 1 1 0 Dimerisation domain Sigma70_r4_2 PF08281.12 gi|257387531|ref|YP_003177304.1| - 0.045 13.4 0.0 0.09 12.5 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_24 PF13412.6 gi|257387531|ref|YP_003177304.1| - 0.047 13.3 0.0 0.088 12.4 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF3081 PF11280.8 gi|257387532|ref|YP_003177305.1| - 0.05 13.4 0.0 0.094 12.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3081) SWIM PF04434.17 gi|257387534|ref|YP_003177307.1| - 0.0015 18.1 0.3 0.0031 17.1 0.3 1.5 1 0 0 1 1 1 1 SWIM zinc finger Globin PF00042.22 gi|257387534|ref|YP_003177307.1| - 0.0095 16.5 0.2 20 5.8 0.0 3.9 4 0 0 4 4 4 1 Globin TPR_7 PF13176.6 gi|257387534|ref|YP_003177307.1| - 0.026 14.5 2.5 1.2 9.3 0.7 3.8 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_6 PF13174.6 gi|257387534|ref|YP_003177307.1| - 0.085 13.5 1.7 0.77 10.5 0.1 3.5 3 0 0 3 3 3 0 Tetratricopeptide repeat ALF PF03752.13 gi|257387534|ref|YP_003177307.1| - 0.24 11.4 2.5 0.71 9.9 0.2 3.0 3 0 0 3 3 3 0 Short repeats of unknown function TPR_2 PF07719.17 gi|257387534|ref|YP_003177307.1| - 0.25 11.5 2.4 0.91 9.8 0.7 3.0 2 0 0 2 2 2 0 Tetratricopeptide repeat TPR_14 PF13428.6 gi|257387534|ref|YP_003177307.1| - 1.7 9.6 14.7 0.65 11.0 0.3 6.2 6 0 0 6 6 6 0 Tetratricopeptide repeat PIN PF01850.21 gi|257387535|ref|YP_003177308.1| - 8.1e-17 61.9 1.9 9e-17 61.7 1.9 1.0 1 0 0 1 1 1 1 PIN domain PIN_3 PF13470.6 gi|257387535|ref|YP_003177308.1| - 1.9e-06 28.6 2.6 2.4e-06 28.3 2.6 1.1 1 0 0 1 1 1 1 PIN domain DUF5615 PF18480.1 gi|257387535|ref|YP_003177308.1| - 0.0083 15.9 1.3 0.69 9.7 0.1 2.3 1 1 1 2 2 2 2 Domain of unknown function (DUF5615) PIN_9 PF18477.1 gi|257387535|ref|YP_003177308.1| - 0.011 16.0 2.9 0.056 13.8 2.9 1.9 1 1 0 1 1 1 0 PIN like domain PIN_2 PF10130.9 gi|257387535|ref|YP_003177308.1| - 0.024 14.9 0.8 0.036 14.3 0.8 1.2 1 0 0 1 1 1 0 PIN domain Aldo_ket_red PF00248.21 gi|257387537|ref|YP_003177310.1| - 5.8e-69 232.5 0.0 6.9e-69 232.3 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family VanZ PF04892.12 gi|257387538|ref|YP_003177311.1| - 5.5e-07 30.3 0.2 7.2e-07 29.9 0.2 1.2 1 0 0 1 1 1 1 VanZ like family Epimerase PF01370.21 gi|257387539|ref|YP_003177312.1| - 1.1e-24 87.3 0.1 1.1e-22 80.6 0.1 2.1 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 gi|257387539|ref|YP_003177312.1| - 2e-13 50.1 0.1 4.6e-13 48.9 0.1 1.5 1 1 0 1 1 1 1 RmlD substrate binding domain GDP_Man_Dehyd PF16363.5 gi|257387539|ref|YP_003177312.1| - 2.3e-09 37.1 0.0 0.00011 21.8 0.0 2.3 1 1 1 2 2 2 2 GDP-mannose 4,6 dehydratase 3Beta_HSD PF01073.19 gi|257387539|ref|YP_003177312.1| - 1.3e-08 34.2 0.0 1.2e-06 27.8 0.0 2.1 1 1 1 2 2 2 2 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.6 gi|257387539|ref|YP_003177312.1| - 3.1e-07 30.5 0.1 1.5e-06 28.3 0.1 2.1 1 1 0 1 1 1 1 NAD(P)H-binding NmrA PF05368.13 gi|257387539|ref|YP_003177312.1| - 3.9e-06 26.6 0.0 1.7e-05 24.5 0.0 2.0 2 0 0 2 2 2 1 NmrA-like family Glyco_transf_4 PF13439.6 gi|257387539|ref|YP_003177312.1| - 0.023 14.7 0.3 0.15 12.0 0.0 2.4 3 0 0 3 3 3 0 Glycosyltransferase Family 4 TrkA_N PF02254.18 gi|257387539|ref|YP_003177312.1| - 0.085 13.1 0.0 0.4 10.9 0.0 2.1 3 0 0 3 3 3 0 TrkA-N domain Glyco_trans_4_4 PF13579.6 gi|257387539|ref|YP_003177312.1| - 0.1 13.0 3.6 0.54 10.7 3.1 2.6 1 1 0 1 1 1 0 Glycosyl transferase 4-like domain DHFR_1 PF00186.19 gi|257387540|ref|YP_003177313.1| - 2.5e-36 124.8 0.0 2.9e-36 124.6 0.0 1.0 1 0 0 1 1 1 1 Dihydrofolate reductase iPGM_N PF06415.13 gi|257387541|ref|YP_003177314.1| - 2.6e-77 259.1 0.2 4.6e-77 258.3 0.2 1.4 1 0 0 1 1 1 1 BPG-independent PGAM N-terminus (iPGM_N) Metalloenzyme PF01676.18 gi|257387541|ref|YP_003177314.1| - 8.4e-72 241.5 0.0 1.6e-71 240.6 0.0 1.5 1 1 0 1 1 1 1 Metalloenzyme superfamily Phosphodiest PF01663.22 gi|257387541|ref|YP_003177314.1| - 5.3e-05 23.0 2.1 0.0001 22.0 0.1 2.0 2 0 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase PglZ PF08665.12 gi|257387541|ref|YP_003177314.1| - 0.00072 19.7 0.1 0.0014 18.8 0.1 1.4 1 0 0 1 1 1 1 PglZ domain Sulfatase PF00884.23 gi|257387541|ref|YP_003177314.1| - 0.00083 18.8 0.1 0.0027 17.2 0.0 1.8 2 1 0 2 2 2 1 Sulfatase AP_endonuc_2 PF01261.24 gi|257387541|ref|YP_003177314.1| - 0.0063 16.0 1.2 0.01 15.3 0.2 1.9 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel PGM_PMM_II PF02879.16 gi|257387541|ref|YP_003177314.1| - 0.37 11.4 3.8 2.4 8.8 0.6 2.9 1 1 1 2 2 2 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CBM_5_12 PF02839.14 gi|257387542|ref|YP_003177315.1| - 1.5e-12 47.3 16.3 7.1e-06 26.3 6.8 2.9 2 0 0 2 2 2 2 Carbohydrate binding domain Glyco_hydro_18 PF00704.28 gi|257387542|ref|YP_003177315.1| - 2.1e-07 31.0 0.0 1.2e-06 28.5 0.0 2.0 1 1 0 1 1 1 1 Glycosyl hydrolases family 18 CBM_5_12_2 PF14600.6 gi|257387542|ref|YP_003177315.1| - 2.1e-06 27.6 12.5 0.0082 16.1 4.3 2.9 2 1 0 2 2 2 2 Cellulose-binding domain bPH_3 PF14470.6 gi|257387543|ref|YP_003177316.1| - 7.2e-05 23.1 0.0 0.00013 22.3 0.0 1.4 1 1 0 1 1 1 1 Bacterial PH domain TPR_1 PF00515.28 gi|257387543|ref|YP_003177316.1| - 0.12 12.2 3.1 4.5 7.3 0.4 2.5 2 0 0 2 2 2 0 Tetratricopeptide repeat GRAM PF02893.20 gi|257387543|ref|YP_003177316.1| - 0.23 11.3 0.0 0.36 10.7 0.0 1.4 1 0 0 1 1 1 0 GRAM domain TPR_2 PF07719.17 gi|257387543|ref|YP_003177316.1| - 0.28 11.4 4.1 4.6 7.6 0.6 3.1 2 0 0 2 2 2 0 Tetratricopeptide repeat FUSC PF04632.12 gi|257387543|ref|YP_003177316.1| - 7.9 4.9 15.6 9.6 4.6 15.6 1.2 1 0 0 1 1 1 0 Fusaric acid resistance protein family QRPTase_C PF01729.19 gi|257387544|ref|YP_003177317.1| - 1.6e-55 187.5 2.6 2e-55 187.1 2.6 1.1 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain QRPTase_N PF02749.16 gi|257387544|ref|YP_003177317.1| - 3.5e-21 75.0 0.7 6.3e-21 74.2 0.1 1.8 2 0 0 2 2 2 1 Quinolinate phosphoribosyl transferase, N-terminal domain Ribul_P_3_epim PF00834.19 gi|257387544|ref|YP_003177317.1| - 0.013 14.9 0.1 0.042 13.2 0.0 1.9 2 1 0 2 2 2 0 Ribulose-phosphate 3 epimerase family FAD_binding_2 PF00890.24 gi|257387545|ref|YP_003177318.1| - 4.8e-76 256.5 6.3 8.5e-76 255.7 6.3 1.4 1 1 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|257387545|ref|YP_003177318.1| - 1.9e-10 40.5 1.0 8.5e-05 21.9 0.7 3.1 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|257387545|ref|YP_003177318.1| - 7.4e-09 35.7 3.7 7.4e-09 35.7 3.7 2.2 1 1 0 2 2 2 1 FAD dependent oxidoreductase GIDA PF01134.22 gi|257387545|ref|YP_003177318.1| - 5.3e-07 29.1 1.5 0.00058 19.1 2.3 2.2 2 0 0 2 2 2 2 Glucose inhibited division protein A HI0933_like PF03486.14 gi|257387545|ref|YP_003177318.1| - 1.7e-06 27.0 0.5 0.0088 14.8 0.5 2.2 2 0 0 2 2 2 2 HI0933-like protein FAD_oxidored PF12831.7 gi|257387545|ref|YP_003177318.1| - 2.4e-06 27.2 3.5 3.6e-06 26.6 2.4 1.7 2 0 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|257387545|ref|YP_003177318.1| - 0.00048 20.3 0.3 0.0011 19.1 0.3 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain AlaDh_PNT_C PF01262.21 gi|257387545|ref|YP_003177318.1| - 0.0009 18.6 0.4 0.002 17.4 0.4 1.6 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Succ_DH_flav_C PF02910.20 gi|257387545|ref|YP_003177318.1| - 0.0011 19.0 0.1 0.0027 17.7 0.1 1.6 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term Thi4 PF01946.17 gi|257387545|ref|YP_003177318.1| - 0.0038 16.5 0.1 0.0074 15.5 0.1 1.4 1 0 0 1 1 1 1 Thi4 family FAD_binding_3 PF01494.19 gi|257387545|ref|YP_003177318.1| - 0.005 16.1 0.2 0.01 15.1 0.2 1.5 1 0 0 1 1 1 1 FAD binding domain DXP_reductoisom PF02670.16 gi|257387545|ref|YP_003177318.1| - 0.2 12.4 1.5 0.51 11.1 0.6 2.1 2 0 0 2 2 2 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase NadA PF02445.16 gi|257387546|ref|YP_003177319.1| - 2.5e-102 342.1 0.1 2.9e-102 341.9 0.1 1.0 1 0 0 1 1 1 1 Quinolinate synthetase A protein DUF4769 PF15992.5 gi|257387546|ref|YP_003177319.1| - 0.083 12.7 0.1 0.15 11.8 0.1 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4769) Lambda_tail_I PF06805.12 gi|257387547|ref|YP_003177320.1| - 0.011 16.1 0.3 0.16 12.3 0.1 2.6 2 0 0 2 2 2 0 Bacteriophage lambda tail assembly protein I HMG-CoA_red PF00368.18 gi|257387548|ref|YP_003177321.1| - 2.1e-130 435.0 9.3 2.4e-130 434.8 9.3 1.0 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A reductase PQQ_2 PF13360.6 gi|257387549|ref|YP_003177322.1| - 6.4e-23 81.6 8.2 8.1e-12 45.2 0.5 3.9 3 1 0 3 3 3 3 PQQ-like domain PQQ PF01011.21 gi|257387549|ref|YP_003177322.1| - 1.4e-17 62.7 6.6 0.00041 20.1 0.1 6.1 6 0 0 6 6 6 4 PQQ enzyme repeat PQQ_3 PF13570.6 gi|257387549|ref|YP_003177322.1| - 1.9e-16 60.0 31.2 0.0023 18.3 0.3 8.0 8 0 0 8 8 8 5 PQQ-like domain TAT_signal PF10518.9 gi|257387549|ref|YP_003177322.1| - 0.035 14.0 0.2 0.08 12.8 0.2 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Gal_mutarotas_2 PF13802.6 gi|257387549|ref|YP_003177322.1| - 0.042 14.2 0.0 8.3 6.8 0.0 2.5 2 0 0 2 2 2 0 Galactose mutarotase-like zf-UDP PF14569.6 gi|257387551|ref|YP_003177324.1| - 0.0042 17.2 0.9 0.01 15.9 0.8 1.7 2 0 0 2 2 2 1 Zinc-binding RING-finger Rrf2 PF02082.20 gi|257387551|ref|YP_003177324.1| - 0.12 12.7 0.1 0.46 10.9 0.0 1.9 2 1 0 2 2 2 0 Transcriptional regulator Zn-ribbon_8 PF09723.10 gi|257387551|ref|YP_003177324.1| - 8.3 6.6 6.1 6.4 7.0 3.4 2.3 2 1 0 2 2 2 0 Zinc ribbon domain CPBP PF02517.16 gi|257387552|ref|YP_003177325.1| - 3.3e-13 49.8 3.0 3.3e-13 49.8 3.0 2.3 2 1 0 2 2 2 1 CPBP intramembrane metalloprotease Cupin_2 PF07883.11 gi|257387553|ref|YP_003177326.1| - 3.4e-21 74.7 2.6 5.4e-21 74.1 2.6 1.3 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.19 gi|257387553|ref|YP_003177326.1| - 3.1e-09 36.8 0.2 4.2e-09 36.4 0.2 1.1 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_1 PF00190.22 gi|257387553|ref|YP_003177326.1| - 2e-06 27.5 0.2 2.3e-06 27.3 0.2 1.1 1 0 0 1 1 1 1 Cupin CENP-C_C PF11699.8 gi|257387553|ref|YP_003177326.1| - 0.00046 20.4 0.0 0.00061 20.0 0.0 1.2 1 0 0 1 1 1 1 Mif2/CENP-C like Cupin_7 PF12973.7 gi|257387553|ref|YP_003177326.1| - 0.00072 19.4 0.3 0.00088 19.1 0.3 1.1 1 0 0 1 1 1 1 ChrR Cupin-like domain Cupin_3 PF05899.12 gi|257387553|ref|YP_003177326.1| - 0.0066 16.1 0.4 0.014 15.0 0.2 1.7 1 1 1 2 2 2 1 Protein of unknown function (DUF861) PCO_ADO PF07847.12 gi|257387553|ref|YP_003177326.1| - 0.012 15.0 0.1 0.36 10.3 0.1 2.0 2 0 0 2 2 2 0 PCO_ADO MannoseP_isomer PF01050.18 gi|257387553|ref|YP_003177326.1| - 0.015 15.2 0.0 0.019 14.8 0.0 1.1 1 0 0 1 1 1 0 Mannose-6-phosphate isomerase Cupin_6 PF12852.7 gi|257387553|ref|YP_003177326.1| - 0.015 15.0 0.1 0.016 14.9 0.1 1.1 1 0 0 1 1 1 0 Cupin ARD PF03079.14 gi|257387553|ref|YP_003177326.1| - 0.08 13.1 0.1 0.097 12.9 0.1 1.2 1 0 0 1 1 1 0 ARD/ARD' family Dynein_attach_N PF15867.5 gi|257387553|ref|YP_003177326.1| - 0.096 12.6 0.0 0.15 12.1 0.0 1.2 1 0 0 1 1 1 0 Dynein attachment factor N-terminus AraC_binding_2 PF14525.6 gi|257387553|ref|YP_003177326.1| - 0.097 12.3 0.3 0.12 12.1 0.3 1.1 1 0 0 1 1 1 0 AraC-binding-like domain Glyco_hydro_20 PF00728.22 gi|257387554|ref|YP_003177327.1| - 5.4e-83 279.3 1.3 1.2e-57 196.0 0.2 2.1 1 1 1 2 2 2 2 Glycosyl hydrolase family 20, catalytic domain PKD PF00801.20 gi|257387554|ref|YP_003177327.1| - 4.8e-32 109.6 17.3 1.5e-16 59.9 4.4 2.9 2 0 0 2 2 2 2 PKD domain Glyco_hydro_20b PF02838.15 gi|257387554|ref|YP_003177327.1| - 1.1e-22 81.1 0.0 4.5e-22 79.1 0.0 2.1 1 0 0 1 1 1 1 Glycosyl hydrolase family 20, domain 2 CBM_5_12 PF02839.14 gi|257387554|ref|YP_003177327.1| - 5.9e-09 36.0 11.1 0.0007 20.0 1.1 3.6 3 0 0 3 3 3 2 Carbohydrate binding domain Y_Y_Y PF07495.13 gi|257387554|ref|YP_003177327.1| - 1.8e-05 24.6 0.4 0.077 13.0 0.1 2.6 2 0 0 2 2 2 2 Y_Y_Y domain CBM_5_12_2 PF14600.6 gi|257387554|ref|YP_003177327.1| - 0.0001 22.1 20.8 0.00072 19.4 3.4 3.2 3 0 0 3 3 3 2 Cellulose-binding domain BiPBP_C PF06832.12 gi|257387554|ref|YP_003177327.1| - 0.00086 19.3 0.1 0.9 9.6 0.0 3.6 4 0 0 4 4 4 1 Penicillin-Binding Protein C-terminus Family PKD_3 PF16820.5 gi|257387554|ref|YP_003177327.1| - 0.0013 18.5 1.0 1.2 8.9 0.1 3.3 3 0 0 3 3 3 1 PKD-like domain ChitinaseA_N PF08329.10 gi|257387554|ref|YP_003177327.1| - 0.0021 17.7 4.7 0.49 10.0 0.4 2.6 2 0 0 2 2 2 2 Chitinase A, N-terminal domain DUF5011 PF16403.5 gi|257387554|ref|YP_003177327.1| - 0.0024 18.0 7.5 0.4 10.8 0.8 2.9 2 0 0 2 2 2 2 Domain of unknown function (DUF5011) Glycohydro_20b2 PF14845.6 gi|257387554|ref|YP_003177327.1| - 0.014 16.1 0.0 0.039 14.6 0.0 1.8 1 0 0 1 1 1 0 beta-acetyl hexosaminidase like DUF4399 PF14347.6 gi|257387554|ref|YP_003177327.1| - 0.058 13.8 0.6 15 6.0 0.0 2.9 3 0 0 3 3 3 0 Domain of unknown function (DUF4399) DUF4625 PF15418.6 gi|257387554|ref|YP_003177327.1| - 0.09 13.0 3.7 8.8 6.6 0.1 3.2 3 0 0 3 3 3 0 Domain of unknown function (DUF4625) Cadherin PF00028.17 gi|257387554|ref|YP_003177327.1| - 0.2 12.1 1.4 21 5.7 0.1 2.7 2 0 0 2 2 2 0 Cadherin domain MG2 PF01835.19 gi|257387554|ref|YP_003177327.1| - 0.66 10.5 2.5 15 6.1 0.2 2.6 1 1 0 2 2 2 0 MG2 domain Rib PF08428.10 gi|257387554|ref|YP_003177327.1| - 3.5 7.7 10.6 2.9 7.9 2.6 2.9 2 1 0 2 2 2 0 Rib/alpha-like repeat Iso_dh PF00180.20 gi|257387555|ref|YP_003177328.1| - 2.1e-101 339.6 0.0 2.6e-101 339.2 0.0 1.1 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase Asparaginase_2 PF01112.18 gi|257387556|ref|YP_003177329.1| - 3.5e-63 213.5 13.7 3.9e-63 213.3 13.7 1.0 1 0 0 1 1 1 1 Asparaginase Peptidase_M24 PF00557.24 gi|257387558|ref|YP_003177331.1| - 1.7e-40 138.9 1.7 3e-40 138.2 1.7 1.4 1 1 0 1 1 1 1 Metallopeptidase family M24 RecR PF02132.15 gi|257387559|ref|YP_003177332.1| - 0.078 12.6 2.7 0.42 10.2 0.2 2.2 2 0 0 2 2 2 0 RecR protein zinc_ribbon_15 PF17032.5 gi|257387559|ref|YP_003177332.1| - 0.12 13.2 3.5 0.26 12.1 3.5 1.5 1 1 0 1 1 1 0 zinc-ribbon family zf-FPG_IleRS PF06827.14 gi|257387559|ref|YP_003177332.1| - 0.2 11.6 3.7 3.4 7.6 0.5 2.2 2 0 0 2 2 2 0 Zinc finger found in FPG and IleRS HIT PF01230.23 gi|257387560|ref|YP_003177333.1| - 3.1e-11 43.9 0.0 7.6e-11 42.6 0.0 1.6 2 0 0 2 2 2 1 HIT domain CwfJ_C_1 PF04677.15 gi|257387560|ref|YP_003177333.1| - 1.6e-06 28.0 0.0 3.1e-06 27.1 0.0 1.4 1 0 0 1 1 1 1 Protein similar to CwfJ C-terminus 1 DcpS_C PF11969.8 gi|257387560|ref|YP_003177333.1| - 5.1e-05 23.7 0.0 0.0001 22.7 0.0 1.5 1 1 0 1 1 1 1 Scavenger mRNA decapping enzyme C-term binding HisKA_7TM PF16927.5 gi|257387561|ref|YP_003177334.1| - 3e-18 66.7 14.6 4.4e-18 66.1 14.6 1.1 1 0 0 1 1 1 1 N-terminal 7TM region of histidine kinase HATPase_c PF02518.26 gi|257387561|ref|YP_003177334.1| - 8.8e-17 61.6 0.0 1.5e-16 60.9 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|257387561|ref|YP_003177334.1| - 1.1e-10 41.4 0.1 9.9e-10 38.3 0.0 2.5 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.10 gi|257387561|ref|YP_003177334.1| - 7.1e-06 26.2 0.1 3.6e-05 24.0 0.1 2.2 1 1 0 1 1 1 1 PAS fold HATPase_c_2 PF13581.6 gi|257387561|ref|YP_003177334.1| - 0.0015 18.5 0.2 0.0035 17.3 0.0 1.6 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain PAS_9 PF13426.7 gi|257387561|ref|YP_003177334.1| - 0.0083 16.4 0.0 0.052 13.8 0.0 2.2 1 1 0 1 1 1 1 PAS domain PMT_4TMC PF16192.5 gi|257387561|ref|YP_003177334.1| - 0.0089 15.6 3.9 0.014 15.0 3.3 1.6 1 1 1 2 2 2 1 C-terminal four TMM region of protein-O-mannosyltransferase PAS_8 PF13188.7 gi|257387561|ref|YP_003177334.1| - 0.072 13.1 0.0 0.29 11.2 0.0 2.1 1 0 0 1 1 1 0 PAS domain PAS PF00989.25 gi|257387561|ref|YP_003177334.1| - 0.078 13.0 0.0 0.57 10.2 0.0 2.2 2 0 0 2 2 2 0 PAS fold Cation_ATPase_C PF00689.21 gi|257387561|ref|YP_003177334.1| - 0.082 12.6 3.1 0.17 11.6 3.1 1.4 1 0 0 1 1 1 0 Cation transporting ATPase, C-terminus MadM PF03818.13 gi|257387561|ref|YP_003177334.1| - 1.1 9.1 6.0 0.16 11.8 1.2 2.1 2 0 0 2 2 2 0 Malonate/sodium symporter MadM subunit Bax1-I PF01027.20 gi|257387561|ref|YP_003177334.1| - 2.1 8.1 13.5 1.2 8.9 3.6 2.2 1 1 1 2 2 2 0 Inhibitor of apoptosis-promoting Bax1 DUF2530 PF10745.9 gi|257387561|ref|YP_003177334.1| - 7.3 6.9 10.4 14 6.0 0.7 3.5 2 1 1 3 3 3 0 Protein of unknown function (DUF2530) Cation_efflux PF01545.21 gi|257387562|ref|YP_003177335.1| - 3.6e-42 144.4 5.2 4.7e-42 144.0 5.2 1.1 1 0 0 1 1 1 1 Cation efflux family ZT_dimer PF16916.5 gi|257387562|ref|YP_003177335.1| - 2.5e-17 62.8 4.1 3.8e-17 62.2 4.1 1.2 1 0 0 1 1 1 1 Dimerisation domain of Zinc Transporter UCR_Fe-S_N PF10399.9 gi|257387562|ref|YP_003177335.1| - 8 5.9 6.6 2.3 7.6 1.6 2.6 2 0 0 2 2 2 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal ECF_trnsprt PF12822.7 gi|257387563|ref|YP_003177336.1| - 0.0097 16.0 0.9 0.011 15.8 0.9 1.1 1 0 0 1 1 1 1 ECF transporter, substrate-specific component Arteri_Gl PF00951.18 gi|257387563|ref|YP_003177336.1| - 0.064 13.1 2.8 0.074 12.9 2.8 1.1 1 0 0 1 1 1 0 Arterivirus GL envelope glycoprotein DUF3262 PF11660.8 gi|257387563|ref|YP_003177336.1| - 0.071 13.5 1.9 0.083 13.3 0.3 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3262) DUF5353 PF17304.2 gi|257387563|ref|YP_003177336.1| - 0.075 12.8 0.4 0.12 12.1 0.4 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5353) MerC PF03203.14 gi|257387563|ref|YP_003177336.1| - 0.098 13.1 3.1 0.13 12.8 3.1 1.2 1 1 0 1 1 1 0 MerC mercury resistance protein SLATT_1 PF18181.1 gi|257387563|ref|YP_003177336.1| - 0.15 12.0 0.9 0.25 11.3 0.1 1.7 1 1 1 2 2 2 0 SMODS and SLOG-associating 2TM effector domain 1 Claudin_2 PF13903.6 gi|257387564|ref|YP_003177337.1| - 0.027 14.2 1.8 0.031 14.0 1.8 1.1 1 0 0 1 1 1 0 PMP-22/EMP/MP20/Claudin tight junction DUF805 PF05656.14 gi|257387564|ref|YP_003177337.1| - 0.067 13.6 1.0 0.083 13.3 1.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF805) ResB PF05140.14 gi|257387564|ref|YP_003177337.1| - 0.12 11.1 0.2 0.15 10.7 0.2 1.1 1 0 0 1 1 1 0 ResB-like family HTH_20 PF12840.7 gi|257387565|ref|YP_003177338.1| - 9.4e-12 44.8 0.6 1.4e-11 44.2 0.6 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|257387565|ref|YP_003177338.1| - 2.4e-06 27.4 0.0 3.9e-06 26.7 0.0 1.5 1 1 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|257387565|ref|YP_003177338.1| - 3.4e-06 26.8 0.0 6.1e-06 26.0 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.6 gi|257387565|ref|YP_003177338.1| - 2.2e-05 24.3 0.1 3.9e-05 23.6 0.0 1.5 2 0 0 2 2 1 1 Crp-like helix-turn-helix domain HTH_24 PF13412.6 gi|257387565|ref|YP_003177338.1| - 2.4e-05 23.8 0.0 4.4e-05 23.0 0.0 1.5 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|257387565|ref|YP_003177338.1| - 2.6e-05 23.9 0.1 4.3e-05 23.2 0.1 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|257387565|ref|YP_003177338.1| - 3.1e-05 23.7 0.1 6.5e-05 22.7 0.1 1.6 1 1 0 1 1 1 1 AsnC-type helix-turn-helix domain TrmB PF01978.19 gi|257387565|ref|YP_003177338.1| - 0.00023 21.0 0.0 0.00035 20.4 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|257387565|ref|YP_003177338.1| - 0.00073 19.4 0.0 0.0013 18.6 0.0 1.4 1 0 0 1 1 1 1 HTH domain Fe_dep_repress PF01325.19 gi|257387565|ref|YP_003177338.1| - 0.00079 19.6 0.0 0.0012 19.0 0.0 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Crp PF00325.20 gi|257387565|ref|YP_003177338.1| - 0.00081 19.0 0.5 0.0019 17.8 0.0 1.9 3 0 0 3 3 2 1 Bacterial regulatory proteins, crp family DprA_WH PF17782.1 gi|257387565|ref|YP_003177338.1| - 0.0031 17.6 0.6 0.0059 16.7 0.3 1.6 1 1 1 2 2 2 1 DprA winged helix domain Rrf2 PF02082.20 gi|257387565|ref|YP_003177338.1| - 0.0052 17.1 0.0 0.0083 16.5 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR PF03551.14 gi|257387565|ref|YP_003177338.1| - 0.0062 16.5 0.0 0.0099 15.8 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family GntR PF00392.21 gi|257387565|ref|YP_003177338.1| - 0.0075 15.9 0.2 0.012 15.3 0.2 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family TetR_N PF00440.23 gi|257387565|ref|YP_003177338.1| - 0.0079 16.0 0.0 0.014 15.2 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family Sigma70_r4_2 PF08281.12 gi|257387565|ref|YP_003177338.1| - 0.011 15.4 0.0 0.019 14.7 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_23 PF13384.6 gi|257387565|ref|YP_003177338.1| - 0.012 15.4 0.0 0.023 14.5 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain HTH_30 PF13556.6 gi|257387565|ref|YP_003177338.1| - 0.012 15.4 0.0 0.025 14.4 0.0 1.5 1 0 0 1 1 1 0 PucR C-terminal helix-turn-helix domain MarR PF01047.22 gi|257387565|ref|YP_003177338.1| - 0.036 14.0 0.0 0.064 13.2 0.0 1.4 1 0 0 1 1 1 0 MarR family Replic_Relax PF13814.6 gi|257387565|ref|YP_003177338.1| - 0.052 13.6 0.0 0.057 13.5 0.0 1.2 1 0 0 1 1 1 0 Replication-relaxation HTH_29 PF13551.6 gi|257387565|ref|YP_003177338.1| - 0.063 13.3 0.0 0.1 12.6 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn helix DUF746 PF05344.11 gi|257387565|ref|YP_003177338.1| - 0.063 13.1 0.1 0.13 12.1 0.1 1.5 1 1 0 1 1 1 0 Domain of Unknown Function (DUF746) HTH_DeoR PF08220.12 gi|257387565|ref|YP_003177338.1| - 0.096 12.4 0.0 0.18 11.6 0.0 1.4 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain CARDB PF07705.11 gi|257387566|ref|YP_003177339.1| - 0.0043 17.3 22.3 0.024 14.9 2.8 4.9 2 1 1 4 4 4 2 CARDB Alpha_adaptinC2 PF02883.20 gi|257387566|ref|YP_003177339.1| - 0.016 15.5 4.0 4.1 7.8 0.7 4.5 3 2 2 5 5 5 0 Adaptin C-terminal domain DUF1775 PF07987.11 gi|257387566|ref|YP_003177339.1| - 0.1 12.9 3.8 0.38 11.0 0.0 3.5 4 1 0 4 4 4 0 Domain of unkown function (DUF1775) Calycin_like PF13944.6 gi|257387566|ref|YP_003177339.1| - 0.1 12.9 0.4 0.1 12.9 0.4 5.2 1 1 5 6 6 6 0 Calycin-like beta-barrel domain CHB_HEX_C PF03174.13 gi|257387566|ref|YP_003177339.1| - 0.37 10.8 1.7 1.8 8.6 0.0 2.9 4 0 0 4 4 4 0 Chitobiase/beta-hexosaminidase C-terminal domain ABC_tran PF00005.27 gi|257387567|ref|YP_003177340.1| - 8e-34 117.1 0.0 1e-33 116.8 0.0 1.1 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|257387567|ref|YP_003177340.1| - 1.5e-05 24.6 0.0 0.14 11.6 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|257387567|ref|YP_003177340.1| - 2.3e-05 24.4 0.5 0.0073 16.1 0.3 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|257387567|ref|YP_003177340.1| - 0.0002 21.0 0.0 0.0004 20.1 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|257387567|ref|YP_003177340.1| - 0.00025 21.5 0.2 0.00042 20.8 0.2 1.5 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|257387567|ref|YP_003177340.1| - 0.0019 18.1 0.1 0.0031 17.4 0.1 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_22 PF13401.6 gi|257387567|ref|YP_003177340.1| - 0.0021 18.3 0.1 0.0033 17.7 0.1 1.6 1 1 0 1 1 1 1 AAA domain MMR_HSR1 PF01926.23 gi|257387567|ref|YP_003177340.1| - 0.033 14.3 0.1 0.078 13.1 0.0 1.8 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_30 PF13604.6 gi|257387567|ref|YP_003177340.1| - 0.033 13.9 0.2 0.08 12.7 0.2 1.8 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|257387567|ref|YP_003177340.1| - 0.04 13.5 0.7 0.14 11.7 0.0 2.1 2 1 1 3 3 3 0 AAA domain T2SSE PF00437.20 gi|257387567|ref|YP_003177340.1| - 0.046 12.8 0.0 0.063 12.3 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_23 PF13476.6 gi|257387567|ref|YP_003177340.1| - 0.053 14.0 0.0 0.096 13.2 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|257387567|ref|YP_003177340.1| - 0.084 13.0 0.7 0.15 12.2 0.7 1.8 1 1 0 1 1 1 0 AAA domain NTPase_1 PF03266.15 gi|257387567|ref|YP_003177340.1| - 0.16 11.9 0.1 8 6.3 0.0 2.1 2 0 0 2 2 2 0 NTPase AAA_15 PF13175.6 gi|257387567|ref|YP_003177340.1| - 0.16 11.6 0.0 0.24 11.1 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain AAA_18 PF13238.6 gi|257387567|ref|YP_003177340.1| - 0.39 11.3 1.5 1.4 9.5 1.5 2.0 1 1 0 1 1 1 0 AAA domain MacB_PCD PF12704.7 gi|257387568|ref|YP_003177341.1| - 1.4e-13 51.7 5.0 1.4e-13 51.7 5.0 2.8 3 0 0 3 3 3 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|257387568|ref|YP_003177341.1| - 2.1e-10 40.9 6.4 2.8e-10 40.5 0.9 2.9 3 0 0 3 3 3 1 FtsX-like permease family CDC48_N PF02359.18 gi|257387568|ref|YP_003177341.1| - 0.03 14.5 0.0 0.071 13.3 0.0 1.6 1 0 0 1 1 1 0 Cell division protein 48 (CDC48), N-terminal domain Yip1 PF04893.17 gi|257387569|ref|YP_003177342.1| - 1.1e-20 74.0 20.0 1.4e-20 73.7 20.0 1.1 1 0 0 1 1 1 1 Yip1 domain DUF1282 PF06930.12 gi|257387569|ref|YP_003177342.1| - 0.00017 21.4 9.3 0.00022 21.1 9.3 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1282) DUF2070 PF09843.9 gi|257387569|ref|YP_003177342.1| - 3.3 5.9 7.7 5 5.3 7.7 1.3 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) DUF997 PF06196.12 gi|257387569|ref|YP_003177342.1| - 5.1 7.2 8.3 0.47 10.5 1.1 2.9 3 0 0 3 3 3 0 Protein of unknown function (DUF997) Radical_SAM PF04055.21 gi|257387570|ref|YP_003177343.1| - 2.1e-20 73.7 0.0 3.2e-20 73.2 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily UPF0004 PF00919.20 gi|257387570|ref|YP_003177343.1| - 4.9e-19 68.2 0.0 9.9e-19 67.2 0.0 1.5 1 0 0 1 1 1 1 Uncharacterized protein family UPF0004 TRAM PF01938.20 gi|257387570|ref|YP_003177343.1| - 2.7e-07 30.5 0.1 6.7e-07 29.2 0.1 1.7 1 0 0 1 1 1 1 TRAM domain TRAM_2 PF18693.1 gi|257387570|ref|YP_003177343.1| - 0.074 13.2 0.6 0.82 9.9 0.1 2.8 3 0 0 3 3 3 0 TRAM domain adh_short_C2 PF13561.6 gi|257387572|ref|YP_003177345.1| - 7.3e-70 235.2 5.4 9.2e-70 234.8 5.4 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|257387572|ref|YP_003177345.1| - 2.9e-57 193.3 3.1 3.6e-57 193.0 3.1 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|257387572|ref|YP_003177345.1| - 3.9e-16 59.5 7.7 1.6e-15 57.5 7.7 1.8 1 1 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|257387572|ref|YP_003177345.1| - 1.7e-05 24.5 2.3 2.5e-05 23.8 2.3 1.4 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Sacchrp_dh_NADP PF03435.18 gi|257387572|ref|YP_003177345.1| - 2e-05 24.9 1.5 2.4e-05 24.6 0.7 1.5 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain 3Beta_HSD PF01073.19 gi|257387572|ref|YP_003177345.1| - 0.00037 19.6 0.3 0.00048 19.2 0.3 1.3 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family 3HCDH_N PF02737.18 gi|257387572|ref|YP_003177345.1| - 0.0056 16.6 3.4 0.0079 16.1 2.4 1.7 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GDP_Man_Dehyd PF16363.5 gi|257387572|ref|YP_003177345.1| - 0.0073 15.7 0.0 0.01 15.2 0.0 1.3 1 0 0 1 1 1 1 GDP-mannose 4,6 dehydratase Glyco_trans_4_4 PF13579.6 gi|257387572|ref|YP_003177345.1| - 0.03 14.8 5.3 1.2 9.6 0.0 2.4 2 1 0 2 2 2 0 Glycosyl transferase 4-like domain THF_DHG_CYH_C PF02882.19 gi|257387572|ref|YP_003177345.1| - 0.038 13.3 0.6 0.26 10.6 0.3 2.5 1 1 1 2 2 2 0 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain IlvN PF07991.12 gi|257387572|ref|YP_003177345.1| - 0.11 12.0 1.7 0.12 12.0 0.6 1.6 2 0 0 2 2 2 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain DeoC PF01791.9 gi|257387573|ref|YP_003177346.1| - 3.3e-07 30.2 3.4 5.4e-07 29.5 3.4 1.3 1 1 0 1 1 1 1 DeoC/LacD family aldolase Dus PF01207.17 gi|257387573|ref|YP_003177346.1| - 0.16 11.0 0.1 0.32 10.0 0.1 1.6 1 1 0 1 1 1 0 Dihydrouridine synthase (Dus) DUF63 PF01889.17 gi|257387574|ref|YP_003177347.1| - 1.5e-18 68.0 5.5 2.5e-18 67.2 5.5 1.2 1 1 0 1 1 1 1 Membrane protein of unknown function DUF63 DUF2339 PF10101.9 gi|257387574|ref|YP_003177347.1| - 0.00044 19.0 22.1 0.00055 18.7 22.1 1.0 1 0 0 1 1 1 1 Predicted membrane protein (DUF2339) GPDPase_memb PF10110.9 gi|257387574|ref|YP_003177347.1| - 1.2 7.8 6.1 0.12 11.1 1.4 1.6 2 0 0 2 2 2 0 Membrane domain of glycerophosphoryl diester phosphodiesterase PCP_red PF08369.10 gi|257387575|ref|YP_003177348.1| - 0.076 13.2 0.3 0.11 12.7 0.3 1.2 1 0 0 1 1 1 0 Proto-chlorophyllide reductase 57 kD subunit PNP_UDP_1 PF01048.20 gi|257387576|ref|YP_003177349.1| - 1.6e-45 155.2 7.7 1.8e-45 155.0 7.7 1.0 1 0 0 1 1 1 1 Phosphorylase superfamily DUF3568 PF12092.8 gi|257387576|ref|YP_003177349.1| - 0.085 12.9 0.1 0.44 10.6 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3568) HPP PF04982.13 gi|257387577|ref|YP_003177350.1| - 7.3e-15 55.2 8.6 1.4e-14 54.4 8.6 1.4 1 0 0 1 1 1 1 HPP family Usp PF00582.26 gi|257387577|ref|YP_003177350.1| - 0.00012 22.6 2.0 0.021 15.4 1.0 3.4 2 2 1 3 3 3 1 Universal stress protein family DUF2967 PF11179.8 gi|257387577|ref|YP_003177350.1| - 0.071 11.2 0.0 0.11 10.6 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2967) TrkA_N PF02254.18 gi|257387578|ref|YP_003177351.1| - 3e-28 98.4 0.2 4.6e-28 97.8 0.2 1.3 1 0 0 1 1 1 1 TrkA-N domain Ion_trans_2 PF07885.16 gi|257387578|ref|YP_003177351.1| - 5.9e-13 48.6 2.2 5.9e-13 48.6 2.2 2.2 2 0 0 2 2 2 1 Ion channel OCD_Mu_crystall PF02423.15 gi|257387578|ref|YP_003177351.1| - 0.01 14.8 0.1 0.01 14.8 0.1 1.5 2 0 0 2 2 2 0 Ornithine cyclodeaminase/mu-crystallin family NTP_transf_3 PF12804.7 gi|257387578|ref|YP_003177351.1| - 0.012 16.0 1.3 0.089 13.2 1.3 2.2 1 1 0 1 1 1 0 MobA-like NTP transferase domain Ion_trans PF00520.31 gi|257387578|ref|YP_003177351.1| - 0.012 14.8 0.1 0.016 14.4 0.1 1.2 1 0 0 1 1 1 0 Ion transport protein tRNA-synt_2_TM PF16995.5 gi|257387578|ref|YP_003177351.1| - 0.024 14.3 6.0 0.04 13.6 5.8 1.5 1 1 0 1 1 1 0 Transmembrane region of lysyl-tRNA synthetase ADH_zinc_N PF00107.26 gi|257387578|ref|YP_003177351.1| - 0.031 14.2 0.2 0.1 12.6 0.1 1.9 2 0 0 2 2 2 0 Zinc-binding dehydrogenase IRK PF01007.20 gi|257387578|ref|YP_003177351.1| - 0.036 13.9 0.0 0.064 13.1 0.0 1.3 1 0 0 1 1 1 0 Inward rectifier potassium channel transmembrane domain PGM1_C PF18105.1 gi|257387578|ref|YP_003177351.1| - 0.043 13.3 0.8 1.3 8.6 0.0 2.6 2 0 0 2 2 2 0 PGM1 C-terminal domain NAD_binding_7 PF13241.6 gi|257387578|ref|YP_003177351.1| - 0.047 14.1 0.1 0.19 12.2 0.1 2.0 1 1 1 2 2 2 0 Putative NAD(P)-binding TrkA_C PF02080.21 gi|257387579|ref|YP_003177352.1| - 1e-13 50.9 0.1 4.3e-12 45.7 0.0 2.7 2 0 0 2 2 2 1 TrkA-C domain 5TM-5TMR_LYT PF07694.12 gi|257387579|ref|YP_003177352.1| - 0.081 12.4 5.8 0.13 11.8 5.8 1.2 1 0 0 1 1 1 0 5TMR of 5TMR-LYT TrkA_C PF02080.21 gi|257387580|ref|YP_003177353.1| - 2.8e-09 36.7 0.1 5.4e-09 35.8 0.1 1.5 1 0 0 1 1 1 1 TrkA-C domain DUF2085 PF09858.9 gi|257387580|ref|YP_003177353.1| - 0.17 12.4 0.3 9.6 6.8 0.6 2.3 2 0 0 2 2 2 0 Predicted membrane protein (DUF2085) DUF1405 PF07187.11 gi|257387581|ref|YP_003177354.1| - 2.6e-49 167.2 12.8 3.2e-49 166.9 12.8 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF1405) DUF2964 PF11177.8 gi|257387581|ref|YP_003177354.1| - 0.7 10.1 5.8 13 6.1 1.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2964) EamA PF00892.20 gi|257387582|ref|YP_003177355.1| - 1.7e-29 102.7 29.6 4.4e-17 62.5 10.1 2.1 2 0 0 2 2 2 2 EamA-like transporter family DUF1724 PF08350.10 gi|257387583|ref|YP_003177356.1| - 1.4e-05 25.1 0.0 2.8e-05 24.2 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF1724) MarR_2 PF12802.7 gi|257387583|ref|YP_003177356.1| - 6.1e-05 22.8 0.4 0.00014 21.6 0.4 1.7 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|257387583|ref|YP_003177356.1| - 6.3e-05 22.9 1.7 0.00024 21.0 0.1 2.3 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_IclR PF09339.10 gi|257387583|ref|YP_003177356.1| - 0.00057 19.6 0.7 0.0037 17.0 0.2 2.6 2 0 0 2 2 2 1 IclR helix-turn-helix domain Trp_repressor PF01371.19 gi|257387583|ref|YP_003177356.1| - 0.0016 18.5 0.0 0.0055 16.8 0.0 1.8 1 0 0 1 1 1 1 Trp repressor protein HTH_23 PF13384.6 gi|257387583|ref|YP_003177356.1| - 0.0021 17.8 0.6 0.0083 15.9 0.1 2.2 2 0 0 2 2 2 1 Homeodomain-like domain TrmB PF01978.19 gi|257387583|ref|YP_003177356.1| - 0.0034 17.3 0.0 0.0086 15.9 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|257387583|ref|YP_003177356.1| - 0.0036 17.2 0.0 0.007 16.3 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|257387583|ref|YP_003177356.1| - 0.014 15.3 0.1 0.026 14.4 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|257387583|ref|YP_003177356.1| - 0.015 14.9 0.0 0.031 13.9 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding DprA_WH PF17782.1 gi|257387583|ref|YP_003177356.1| - 1.5 9.0 6.9 4.1 7.6 0.3 3.0 3 0 0 3 3 3 0 DprA winged helix domain FixG_C PF11614.8 gi|257387584|ref|YP_003177357.1| - 0.058 13.6 0.1 4.7 7.4 0.1 2.5 2 0 0 2 2 2 0 IG-like fold at C-terminal of FixG, putative oxidoreductase CARDB PF07705.11 gi|257387584|ref|YP_003177357.1| - 0.12 12.6 8.2 3.3 8.0 0.3 2.8 2 1 0 3 3 3 0 CARDB MG4 PF17789.1 gi|257387584|ref|YP_003177357.1| - 0.14 12.4 3.5 4.8 7.4 0.1 3.2 3 1 1 4 4 4 0 Macroglobulin domain MG4 tRNA-synt_1 PF00133.22 gi|257387585|ref|YP_003177358.1| - 4.9e-123 411.5 0.1 1.2e-121 406.9 0.1 2.0 1 1 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|257387585|ref|YP_003177358.1| - 4.2e-36 124.2 0.0 9.5e-36 123.1 0.0 1.6 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1g PF09334.11 gi|257387585|ref|YP_003177358.1| - 1.4e-20 73.5 0.6 7.9e-11 41.3 0.1 3.6 3 1 0 3 3 3 3 tRNA synthetases class I (M) tRNA-synt_1e PF01406.19 gi|257387585|ref|YP_003177358.1| - 5.5e-05 22.7 0.0 0.17 11.2 0.0 2.4 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|257387585|ref|YP_003177358.1| - 8.6e-05 21.6 0.0 0.0022 17.0 0.0 2.2 2 0 0 2 2 2 1 tRNA synthetases class I (K) tRNA-synt_1_2 PF13603.6 gi|257387585|ref|YP_003177358.1| - 0.0001 21.9 0.0 0.00025 20.6 0.0 1.6 1 1 0 1 1 1 1 Leucyl-tRNA synthetase, Domain 2 DZR PF12773.7 gi|257387585|ref|YP_003177358.1| - 0.00052 20.0 0.3 0.017 15.2 0.1 2.4 2 0 0 2 2 2 1 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|257387585|ref|YP_003177358.1| - 0.00084 19.4 2.3 0.024 14.7 0.5 2.8 2 0 0 2 2 2 1 Zinc ribbon domain zf-dskA_traR PF01258.17 gi|257387585|ref|YP_003177358.1| - 0.021 14.7 0.1 0.021 14.7 0.1 2.5 3 0 0 3 3 3 0 Prokaryotic dksA/traR C4-type zinc finger HypA PF01155.19 gi|257387585|ref|YP_003177358.1| - 0.17 11.9 0.6 3.3 7.8 0.0 2.5 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TF_Zn_Ribbon PF08271.12 gi|257387585|ref|YP_003177358.1| - 0.29 10.7 2.1 8.6 6.0 0.1 3.9 5 0 0 5 5 5 0 TFIIB zinc-binding zf_UBZ PF18439.1 gi|257387585|ref|YP_003177358.1| - 0.85 9.3 10.3 4.4 7.0 0.1 3.6 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger zf-IS66 PF13005.7 gi|257387585|ref|YP_003177358.1| - 2 8.9 5.5 7.6 7.0 0.1 3.4 3 0 0 3 3 3 0 zinc-finger binding domain of transposase IS66 zinc_ribbon_2 PF13240.6 gi|257387585|ref|YP_003177358.1| - 2.4 8.0 5.8 14 5.6 0.3 3.0 3 0 0 3 3 3 0 zinc-ribbon domain Peptidase_M48 PF01435.18 gi|257387586|ref|YP_003177359.1| - 7.1e-18 65.1 0.0 1.3e-17 64.2 0.0 1.4 1 0 0 1 1 1 1 Peptidase family M48 YebO PF13974.6 gi|257387587|ref|YP_003177360.1| - 0.045 13.8 0.2 0.1 12.7 0.2 1.5 1 0 0 1 1 1 0 YebO-like protein Pilin_N PF07790.11 gi|257387588|ref|YP_003177361.1| - 4.3e-15 56.4 3.2 7.6e-15 55.6 3.2 1.4 1 0 0 1 1 1 1 Archaeal Type IV pilin, N-terminal ASH PF15780.5 gi|257387588|ref|YP_003177361.1| - 0.00037 20.6 0.1 0.0006 20.0 0.1 1.3 1 0 0 1 1 1 1 Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin DUF2892 PF11127.8 gi|257387589|ref|YP_003177362.1| - 5.1e-09 36.0 0.2 6.2e-09 35.8 0.2 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2892) SSF PF00474.17 gi|257387590|ref|YP_003177363.1| - 1.5e-36 126.2 22.5 2.8e-34 118.7 18.3 2.1 1 1 1 2 2 2 2 Sodium:solute symporter family DUF3311 PF11755.8 gi|257387591|ref|YP_003177364.1| - 1.2e-12 47.6 15.7 1.7e-12 47.1 15.7 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3311) Glyco_hydro_42 PF02449.15 gi|257387591|ref|YP_003177364.1| - 0.067 12.5 0.6 0.071 12.4 0.6 1.1 1 0 0 1 1 1 0 Beta-galactosidase DUF4131 PF13567.6 gi|257387591|ref|YP_003177364.1| - 0.58 9.8 4.4 0.72 9.5 4.4 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) AP_endonuc_2 PF01261.24 gi|257387592|ref|YP_003177365.1| - 1.2e-21 77.1 3.3 1.7e-21 76.6 3.3 1.2 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel UxuA PF03786.13 gi|257387592|ref|YP_003177365.1| - 0.082 11.7 0.0 0.16 10.8 0.0 1.4 1 0 0 1 1 1 0 D-mannonate dehydratase (UxuA) Toprim_4 PF13662.6 gi|257387593|ref|YP_003177366.1| - 3e-11 43.7 0.3 8e-11 42.3 0.3 1.8 1 0 0 1 1 1 1 Toprim domain Toprim_2 PF13155.6 gi|257387593|ref|YP_003177366.1| - 9.1e-07 29.2 0.1 4e-06 27.2 0.0 2.0 2 0 0 2 2 2 1 Toprim-like Toprim PF01751.22 gi|257387593|ref|YP_003177366.1| - 0.039 14.2 0.2 0.28 11.4 0.2 2.3 1 1 0 1 1 1 0 Toprim domain Acetyltransf_1 PF00583.25 gi|257387594|ref|YP_003177367.1| - 1.1e-14 54.7 0.0 1.4e-14 54.3 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|257387594|ref|YP_003177367.1| - 3.1e-10 40.1 0.0 3.8e-10 39.8 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|257387594|ref|YP_003177367.1| - 7.3e-09 35.9 0.0 9.7e-09 35.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|257387594|ref|YP_003177367.1| - 5.6e-06 26.5 0.0 1.6e-05 25.0 0.0 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|257387594|ref|YP_003177367.1| - 0.00057 19.8 0.0 0.00078 19.4 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.6 gi|257387594|ref|YP_003177367.1| - 0.0023 17.6 0.1 0.0037 16.9 0.1 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|257387594|ref|YP_003177367.1| - 0.011 15.9 0.1 0.015 15.5 0.1 1.3 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|257387594|ref|YP_003177367.1| - 0.1 12.8 0.0 0.15 12.2 0.0 1.3 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase DUF92 PF01940.16 gi|257387595|ref|YP_003177368.1| - 3.8e-51 173.8 13.4 3.8e-51 173.8 13.4 3.1 2 2 0 2 2 2 1 Integral membrane protein DUF92 SLH PF00395.20 gi|257387595|ref|YP_003177368.1| - 0.2 11.7 0.3 0.51 10.4 0.3 1.7 1 0 0 1 1 1 0 S-layer homology domain Prenyltransf PF01255.19 gi|257387596|ref|YP_003177369.1| - 1.9e-22 79.9 0.0 2.8e-22 79.3 0.0 1.2 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase GRAS PF03514.14 gi|257387596|ref|YP_003177369.1| - 0.042 12.8 0.0 0.056 12.4 0.0 1.1 1 0 0 1 1 1 0 GRAS domain family Prenyltransf PF01255.19 gi|257387597|ref|YP_003177370.1| - 7.3e-64 215.4 0.0 9.2e-64 215.0 0.0 1.1 1 0 0 1 1 1 1 Putative undecaprenyl diphosphate synthase CSD PF00313.22 gi|257387598|ref|YP_003177371.1| - 3.7e-21 74.7 0.1 4.1e-21 74.6 0.1 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain S1-like PF14444.6 gi|257387598|ref|YP_003177371.1| - 0.019 14.9 3.6 0.048 13.6 3.6 1.7 1 1 0 1 1 1 0 S1-like Rho_RNA_bind PF07497.12 gi|257387598|ref|YP_003177371.1| - 0.024 14.5 0.0 0.026 14.4 0.0 1.1 1 0 0 1 1 1 0 Rho termination factor, RNA-binding domain OB_RNB PF08206.11 gi|257387598|ref|YP_003177371.1| - 0.06 13.0 2.5 0.096 12.4 2.5 1.4 1 0 0 1 1 1 0 Ribonuclease B OB domain CSD PF00313.22 gi|257387599|ref|YP_003177372.1| - 7.6e-21 73.7 0.1 8.4e-21 73.6 0.1 1.0 1 0 0 1 1 1 1 'Cold-shock' DNA-binding domain Rho_RNA_bind PF07497.12 gi|257387599|ref|YP_003177372.1| - 0.014 15.2 0.0 0.016 15.0 0.0 1.1 1 0 0 1 1 1 0 Rho termination factor, RNA-binding domain S1-like PF14444.6 gi|257387599|ref|YP_003177372.1| - 0.021 14.8 2.9 0.054 13.4 2.9 1.7 1 1 0 1 1 1 0 S1-like OB_RNB PF08206.11 gi|257387599|ref|YP_003177372.1| - 0.078 12.7 2.9 0.13 12.0 2.9 1.4 1 0 0 1 1 1 0 Ribonuclease B OB domain PMT_2 PF13231.6 gi|257387601|ref|YP_003177374.1| - 2.1e-10 41.1 12.8 1.1e-08 35.5 6.8 2.7 2 0 0 2 2 2 2 Dolichyl-phosphate-mannose-protein mannosyltransferase GTA_holin_3TM PF11351.8 gi|257387601|ref|YP_003177374.1| - 0.98 10.0 3.1 2.4 8.7 3.1 1.6 1 0 0 1 1 1 0 Holin of 3TMs, for gene-transfer release CPSase_sm_chain PF00988.22 gi|257387602|ref|YP_003177375.1| - 9.6e-35 119.2 0.0 1.7e-33 115.2 0.0 2.3 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase small chain, CPSase domain GATase PF00117.28 gi|257387602|ref|YP_003177375.1| - 9.6e-34 116.8 0.0 1.8e-33 115.9 0.0 1.5 2 0 0 2 2 2 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|257387602|ref|YP_003177375.1| - 2.9e-05 23.9 0.3 0.037 13.8 0.2 2.3 1 1 1 2 2 2 2 Peptidase C26 Pro-kuma_activ PF09286.11 gi|257387602|ref|YP_003177375.1| - 0.045 14.0 0.0 0.078 13.3 0.0 1.3 1 0 0 1 1 1 0 Pro-kumamolisin, activation domain HTH_AsnC-type PF13404.6 gi|257387603|ref|YP_003177376.1| - 2.6e-16 59.2 0.3 4.5e-16 58.4 0.3 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|257387603|ref|YP_003177376.1| - 1.6e-15 56.4 0.1 2.6e-15 55.7 0.1 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding AsnC_trans_reg PF01037.21 gi|257387603|ref|YP_003177376.1| - 2.4e-11 43.4 0.7 3.9e-11 42.8 0.7 1.3 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain Sigma70_r4_2 PF08281.12 gi|257387603|ref|YP_003177376.1| - 0.00014 21.4 0.0 0.0003 20.4 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_20 PF12840.7 gi|257387603|ref|YP_003177376.1| - 0.0007 19.6 0.0 0.0014 18.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|257387603|ref|YP_003177376.1| - 0.0013 18.6 0.0 0.0021 18.0 0.0 1.4 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.7 gi|257387603|ref|YP_003177376.1| - 0.0014 18.5 0.1 0.003 17.4 0.1 1.5 1 0 0 1 1 1 1 MarR family Sigma70_r4 PF04545.16 gi|257387603|ref|YP_003177376.1| - 0.0015 18.0 0.1 0.0026 17.2 0.1 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_Tnp_ISL3 PF13542.6 gi|257387603|ref|YP_003177376.1| - 0.0017 17.7 0.5 0.0069 15.8 0.0 2.0 2 0 0 2 2 2 1 Helix-turn-helix domain of transposase family ISL3 NapD PF03927.13 gi|257387603|ref|YP_003177376.1| - 0.003 17.6 0.8 0.0055 16.7 0.8 1.4 1 0 0 1 1 1 1 NapD protein MarR PF01047.22 gi|257387603|ref|YP_003177376.1| - 0.004 17.0 0.0 0.0073 16.2 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_23 PF13384.6 gi|257387603|ref|YP_003177376.1| - 0.0047 16.7 0.0 0.0082 15.9 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_IclR PF09339.10 gi|257387603|ref|YP_003177376.1| - 0.0053 16.5 0.0 0.011 15.5 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_28 PF13518.6 gi|257387603|ref|YP_003177376.1| - 0.015 15.4 0.0 0.083 13.0 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain HrcA_DNA-bdg PF03444.15 gi|257387603|ref|YP_003177376.1| - 0.018 14.7 0.0 0.032 13.9 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding GntR PF00392.21 gi|257387603|ref|YP_003177376.1| - 0.019 14.6 0.0 0.032 13.9 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family TrmB PF01978.19 gi|257387603|ref|YP_003177376.1| - 0.037 13.9 0.1 0.092 12.6 0.0 1.6 1 1 1 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|257387603|ref|YP_003177376.1| - 0.038 14.0 0.1 0.068 13.2 0.1 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_5 PF01022.20 gi|257387603|ref|YP_003177376.1| - 0.048 13.5 0.0 0.1 12.5 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_Mga PF08280.11 gi|257387603|ref|YP_003177376.1| - 0.048 13.7 0.0 0.082 13.0 0.0 1.4 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain PaaX PF07848.12 gi|257387603|ref|YP_003177376.1| - 0.053 13.7 0.0 0.084 13.1 0.0 1.3 1 0 0 1 1 1 0 PaaX-like protein DUF746 PF05344.11 gi|257387603|ref|YP_003177376.1| - 0.053 13.3 0.0 0.2 11.5 0.0 1.9 2 0 0 2 2 2 0 Domain of Unknown Function (DUF746) Penicillinase_R PF03965.16 gi|257387603|ref|YP_003177376.1| - 0.091 13.1 0.0 0.14 12.5 0.0 1.4 1 0 0 1 1 1 0 Penicillinase repressor DUF4191 PF13829.6 gi|257387603|ref|YP_003177376.1| - 0.12 11.7 0.2 0.43 9.9 0.1 1.8 1 1 0 2 2 2 0 Domain of unknown function (DUF4191) GerE PF00196.19 gi|257387603|ref|YP_003177376.1| - 0.12 11.9 0.0 0.31 10.6 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family Radical_SAM PF04055.21 gi|257387604|ref|YP_003177377.1| - 2.8e-25 89.6 0.0 6.1e-25 88.5 0.0 1.5 1 0 0 1 1 1 1 Radical SAM superfamily Mob_synth_C PF06463.13 gi|257387604|ref|YP_003177377.1| - 1.8e-14 53.8 0.0 6.2e-14 52.0 0.0 1.8 1 1 0 1 1 1 1 Molybdenum Cofactor Synthesis C Fer4_12 PF13353.6 gi|257387604|ref|YP_003177377.1| - 6.3e-07 29.7 0.0 1.2e-06 28.9 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|257387604|ref|YP_003177377.1| - 1.4e-05 25.2 0.0 3.8e-05 23.8 0.0 1.7 2 0 0 2 2 2 1 4Fe-4S single cluster domain Imm75 PF15660.6 gi|257387604|ref|YP_003177377.1| - 0.0079 16.4 0.0 0.017 15.3 0.0 1.5 1 0 0 1 1 1 1 Putative Immunity protein 75 Cytochrom_C PF00034.21 gi|257387604|ref|YP_003177377.1| - 0.11 13.7 0.0 2.8 9.1 0.0 2.5 2 0 0 2 2 2 0 Cytochrome c Paired_CXXCH_1 PF09699.10 gi|257387604|ref|YP_003177377.1| - 3.4 7.5 5.6 5.6 6.8 1.0 2.4 2 0 0 2 2 2 0 Doubled CXXCH motif (Paired_CXXCH_1) HTH_10 PF04967.12 gi|257387605|ref|YP_003177378.1| - 6.1e-18 64.4 0.2 9.4e-18 63.8 0.2 1.3 1 0 0 1 1 1 1 HTH DNA binding domain MarR_2 PF12802.7 gi|257387605|ref|YP_003177378.1| - 0.017 15.0 0.0 0.06 13.3 0.0 1.9 2 0 0 2 2 2 0 MarR family DUF4250 PF14056.6 gi|257387605|ref|YP_003177378.1| - 0.077 13.0 0.2 0.23 11.5 0.1 1.8 2 0 0 2 2 2 0 Domain of unknown function (DUF4250) HTH_20 PF12840.7 gi|257387605|ref|YP_003177378.1| - 0.085 12.9 0.0 0.3 11.2 0.0 2.0 1 1 0 1 1 1 0 Helix-turn-helix domain zf-CDGSH PF09360.10 gi|257387606|ref|YP_003177379.1| - 6.6e-11 42.3 0.1 1.3e-10 41.3 0.1 1.5 1 0 0 1 1 1 1 Iron-binding zinc finger CDGSH type CMD PF02627.20 gi|257387607|ref|YP_003177380.1| - 3.2e-08 33.5 0.0 4.2e-08 33.1 0.0 1.1 1 0 0 1 1 1 1 Carboxymuconolactone decarboxylase family Ferredoxin_N PF16947.5 gi|257387608|ref|YP_003177381.1| - 4e-31 106.9 6.4 4.6e-31 106.7 6.4 1.1 1 0 0 1 1 1 1 N-terminal region of 4Fe-4S ferredoxin iron-sulfur binding SHOCT PF09851.9 gi|257387608|ref|YP_003177381.1| - 3e-05 23.6 2.6 0.0014 18.3 0.1 2.6 2 0 0 2 2 2 2 Short C-terminal domain GvpG PF05120.12 gi|257387608|ref|YP_003177381.1| - 0.99 9.5 4.8 4.5 7.3 0.3 2.1 1 1 1 2 2 2 0 Gas vesicle protein G Molybdopterin PF00384.22 gi|257387609|ref|YP_003177382.1| - 2.9e-28 99.0 0.0 4.8e-22 78.5 0.0 2.2 2 0 0 2 2 2 2 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|257387609|ref|YP_003177382.1| - 2.9e-13 49.8 0.0 6.1e-13 48.8 0.0 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|257387609|ref|YP_003177382.1| - 3.6e-08 33.3 0.2 7.1e-08 32.3 0.2 1.5 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain TAT_signal PF10518.9 gi|257387609|ref|YP_003177382.1| - 0.00013 21.7 2.8 0.00025 20.8 2.8 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Fer4_11 PF13247.6 gi|257387610|ref|YP_003177383.1| - 2.7e-15 56.3 20.7 2.3e-12 46.9 5.3 2.9 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|257387610|ref|YP_003177383.1| - 4.3e-14 52.8 29.4 2.5e-07 31.2 8.2 4.0 2 2 2 4 4 4 4 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|257387610|ref|YP_003177383.1| - 4.3e-13 49.2 21.1 5e-07 29.7 3.9 3.7 2 2 1 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.27 gi|257387610|ref|YP_003177383.1| - 1.7e-11 43.4 30.4 8.4e-05 22.2 3.3 5.3 5 0 0 5 5 5 4 4Fe-4S binding domain Fer4_9 PF13187.6 gi|257387610|ref|YP_003177383.1| - 2.3e-07 30.9 28.2 0.00032 20.8 8.7 3.5 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|257387610|ref|YP_003177383.1| - 2.3e-07 30.6 34.0 4.1e-05 23.5 2.2 4.9 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_2 PF12797.7 gi|257387610|ref|YP_003177383.1| - 1.4e-05 24.9 35.2 0.0022 18.0 1.3 4.7 4 1 0 4 4 4 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|257387610|ref|YP_003177383.1| - 0.0001 22.7 29.4 0.053 14.0 11.9 3.8 2 2 1 3 3 3 2 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|257387610|ref|YP_003177383.1| - 0.00017 22.3 38.4 0.27 12.3 1.8 4.4 4 0 0 4 4 4 4 4Fe-4S binding domain Fer4_21 PF14697.6 gi|257387610|ref|YP_003177383.1| - 0.00019 21.5 23.9 0.027 14.6 6.8 3.7 3 1 0 3 3 3 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|257387610|ref|YP_003177383.1| - 0.00071 19.9 2.2 0.00071 19.9 2.2 4.5 4 1 0 4 4 3 3 4Fe-4S binding domain Fer4_16 PF13484.6 gi|257387610|ref|YP_003177383.1| - 0.00074 20.4 29.5 0.58 11.1 0.0 5.0 4 1 2 6 6 6 3 4Fe-4S double cluster binding domain Fer4_17 PF13534.6 gi|257387610|ref|YP_003177383.1| - 0.013 16.1 30.9 0.05 14.2 2.0 4.1 2 2 3 5 5 5 0 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|257387610|ref|YP_003177383.1| - 1.3 8.8 27.8 0.4 10.5 0.5 4.1 2 1 2 4 4 4 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_15 PF13459.6 gi|257387610|ref|YP_003177383.1| - 4.8 8.0 23.1 4.4 8.1 5.2 4.6 2 2 2 4 4 4 0 4Fe-4S single cluster domain NrfD PF03916.14 gi|257387611|ref|YP_003177384.1| - 8.6e-18 65.0 17.6 8.6e-18 65.0 17.6 1.8 2 1 0 2 2 2 1 Polysulphide reductase, NrfD Nitrate_red_del PF02613.15 gi|257387612|ref|YP_003177385.1| - 5.5e-22 78.3 0.1 7.8e-22 77.8 0.1 1.2 1 0 0 1 1 1 1 Nitrate reductase delta subunit ParA PF10609.9 gi|257387614|ref|YP_003177387.1| - 1.4e-98 329.3 0.0 1.8e-98 328.9 0.0 1.1 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|257387614|ref|YP_003177387.1| - 2.6e-16 59.8 0.0 3.8e-15 56.1 0.0 2.4 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain FeS_assembly_P PF01883.19 gi|257387614|ref|YP_003177387.1| - 1.3e-14 54.1 0.4 4.1e-14 52.5 0.4 1.9 1 0 0 1 1 1 1 Iron-sulfur cluster assembly protein AAA_31 PF13614.6 gi|257387614|ref|YP_003177387.1| - 9.3e-09 35.4 1.4 5.5e-08 32.9 0.5 2.2 2 1 0 2 2 2 1 AAA domain MipZ PF09140.11 gi|257387614|ref|YP_003177387.1| - 9.6e-07 28.3 0.2 1.5e-06 27.7 0.2 1.4 1 1 0 1 1 1 1 ATPase MipZ VirC1 PF07015.11 gi|257387614|ref|YP_003177387.1| - 0.00011 21.6 0.0 0.00018 20.9 0.0 1.3 1 0 0 1 1 1 1 VirC1 protein Fer4_NifH PF00142.18 gi|257387614|ref|YP_003177387.1| - 0.00012 21.7 0.0 0.0047 16.4 0.2 2.3 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.15 gi|257387614|ref|YP_003177387.1| - 0.00038 19.8 2.4 0.0013 18.0 0.9 2.0 2 0 0 2 2 2 1 Anion-transporting ATPase AAA_25 PF13481.6 gi|257387614|ref|YP_003177387.1| - 0.0018 17.9 0.0 0.0041 16.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_26 PF13500.6 gi|257387614|ref|YP_003177387.1| - 0.0028 17.5 0.1 1.3 8.8 0.2 2.3 2 0 0 2 2 2 2 AAA domain TF_Zn_Ribbon PF08271.12 gi|257387614|ref|YP_003177387.1| - 0.012 15.2 0.1 0.022 14.3 0.1 1.5 1 0 0 1 1 1 0 TFIIB zinc-binding RsgA_GTPase PF03193.16 gi|257387614|ref|YP_003177387.1| - 0.013 15.4 0.0 0.023 14.6 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase Zeta_toxin PF06414.12 gi|257387614|ref|YP_003177387.1| - 0.027 13.8 0.1 0.059 12.6 0.1 1.5 1 1 1 2 2 2 0 Zeta toxin CLP1_P PF16575.5 gi|257387614|ref|YP_003177387.1| - 0.044 13.6 0.0 0.069 12.9 0.0 1.3 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop APS_kinase PF01583.20 gi|257387614|ref|YP_003177387.1| - 0.059 13.3 0.0 0.11 12.4 0.0 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase CBP_BcsQ PF06564.12 gi|257387614|ref|YP_003177387.1| - 0.14 11.6 0.5 0.48 9.9 0.1 1.8 2 0 0 2 2 2 0 Cellulose biosynthesis protein BcsQ zf-C3H2C3 PF17122.5 gi|257387615|ref|YP_003177388.1| - 0.23 11.5 2.1 0.36 10.9 2.1 1.3 1 0 0 1 1 1 0 Zinc-finger NUDIX PF00293.28 gi|257387616|ref|YP_003177389.1| - 4.8e-15 55.8 1.1 6.1e-15 55.4 1.1 1.2 1 0 0 1 1 1 1 NUDIX domain GIDE PF12483.8 gi|257387617|ref|YP_003177390.1| - 7.2e-05 22.2 0.0 0.11 11.8 0.0 2.5 1 1 1 2 2 2 2 E3 Ubiquitin ligase MgtC PF02308.16 gi|257387617|ref|YP_003177390.1| - 0.11 12.9 1.7 0.18 12.2 1.7 1.3 1 0 0 1 1 1 0 MgtC family HisKA_7TM PF16927.5 gi|257387618|ref|YP_003177391.1| - 1.8e-46 159.0 16.6 2.3e-46 158.6 16.6 1.1 1 0 0 1 1 1 1 N-terminal 7TM region of histidine kinase HATPase_c PF02518.26 gi|257387618|ref|YP_003177391.1| - 7.5e-13 49.0 0.0 1.3e-12 48.2 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|257387618|ref|YP_003177391.1| - 4e-09 36.7 0.7 1.3e-08 35.1 0.7 1.9 1 1 0 1 1 1 1 PAS fold HATPase_c_2 PF13581.6 gi|257387618|ref|YP_003177391.1| - 1.1e-07 31.8 0.7 2.6e-07 30.6 0.4 1.8 1 1 1 2 2 2 1 Histidine kinase-like ATPase domain PAS PF00989.25 gi|257387618|ref|YP_003177391.1| - 6.3e-07 29.4 0.0 1.5e-06 28.1 0.0 1.7 1 0 0 1 1 1 1 PAS fold HATPase_c_3 PF13589.6 gi|257387618|ref|YP_003177391.1| - 2e-06 27.7 0.1 3.4e-06 26.9 0.1 1.3 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|257387618|ref|YP_003177391.1| - 1.6e-05 25.1 0.0 4.9e-05 23.5 0.0 1.9 1 0 0 1 1 1 1 PAS domain HisKA_4TM PF16926.5 gi|257387618|ref|YP_003177391.1| - 0.00026 20.6 0.2 0.00026 20.6 0.2 3.0 3 1 1 4 4 4 1 Archaeal 4TM region of histidine kinase PAS_8 PF13188.7 gi|257387618|ref|YP_003177391.1| - 0.00044 20.2 0.1 0.0018 18.3 0.1 2.0 1 0 0 1 1 1 1 PAS domain HisKA PF00512.25 gi|257387618|ref|YP_003177391.1| - 0.0008 19.4 0.1 0.0019 18.2 0.1 1.7 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain SPOB_a PF14689.6 gi|257387618|ref|YP_003177391.1| - 0.08 12.7 0.4 0.16 11.7 0.4 1.4 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain RsmJ PF04378.13 gi|257387620|ref|YP_003177393.1| - 0.12 11.6 0.0 0.19 10.9 0.0 1.4 1 0 0 1 1 1 0 Ribosomal RNA large subunit methyltransferase D, RlmJ DDE_Tnp_1 PF01609.21 gi|257387621|ref|YP_003177394.1| - 4.1e-12 46.2 4.2 4.7e-11 42.7 4.2 2.1 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_5 PF13737.6 gi|257387621|ref|YP_003177394.1| - 0.11 12.8 0.0 0.21 11.9 0.0 1.4 1 0 0 1 1 1 0 Transposase DDE domain Radical_SAM PF04055.21 gi|257387623|ref|YP_003177396.1| - 1.5e-12 48.2 0.1 8e-11 42.6 0.0 2.3 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|257387623|ref|YP_003177396.1| - 0.14 12.5 0.1 0.25 11.6 0.1 1.4 1 0 0 1 1 1 0 4Fe-4S single cluster domain Radical_SAM PF04055.21 gi|257387624|ref|YP_003177397.1| - 2e-11 44.6 0.0 2.4e-10 41.0 0.0 2.3 2 1 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|257387624|ref|YP_003177397.1| - 1.3 9.3 3.6 0.96 9.7 0.1 2.4 3 0 0 3 3 3 0 4Fe-4S single cluster domain ParE_toxin PF05016.15 gi|257387625|ref|YP_003177398.1| - 0.011 16.3 0.0 0.019 15.6 0.0 1.4 1 1 0 1 1 1 0 ParE toxin of type II toxin-antitoxin system, parDE RHH_1 PF01402.21 gi|257387626|ref|YP_003177399.1| - 2.2e-05 24.2 0.1 3.3e-05 23.7 0.1 1.3 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family HicB_lk_antitox PF15919.5 gi|257387626|ref|YP_003177399.1| - 0.043 13.9 0.0 0.064 13.4 0.0 1.2 1 0 0 1 1 1 0 HicB_like antitoxin of bacterial toxin-antitoxin system FxsA PF04186.13 gi|257387628|ref|YP_003177401.1| - 8.9e-30 103.0 9.8 1.1e-29 102.7 9.8 1.1 1 0 0 1 1 1 1 FxsA cytoplasmic membrane protein DUF4267 PF14087.6 gi|257387628|ref|YP_003177401.1| - 0.56 10.3 4.4 0.98 9.5 4.3 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4267) Phage_holin_3_6 PF07332.11 gi|257387628|ref|YP_003177401.1| - 0.61 10.1 15.4 3.4 7.8 9.2 2.1 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III PrgI PF12666.7 gi|257387628|ref|YP_003177401.1| - 2.9 8.7 6.0 6.9 7.5 0.3 2.2 2 0 0 2 2 2 0 PrgI family protein Thioredox_DsbH PF03190.15 gi|257387629|ref|YP_003177402.1| - 6.7e-23 81.4 0.0 1.3e-22 80.5 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.6 gi|257387629|ref|YP_003177402.1| - 3.8e-13 49.4 0.0 3.6e-12 46.3 0.0 2.3 2 0 0 2 2 2 1 Thioredoxin-like ApbE PF02424.15 gi|257387629|ref|YP_003177402.1| - 0.00079 19.0 0.2 0.0013 18.3 0.2 1.3 1 0 0 1 1 1 1 ApbE family Glyco_hydro_88 PF07470.13 gi|257387629|ref|YP_003177402.1| - 0.0051 15.9 0.5 1.7 7.6 0.0 2.8 1 1 2 3 3 3 2 Glycosyl Hydrolase Family 88 GlcNAc_2-epim PF07221.11 gi|257387629|ref|YP_003177402.1| - 0.018 14.3 0.7 0.018 14.3 0.7 2.3 3 0 0 3 3 3 0 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) Thioredoxin_2 PF13098.6 gi|257387629|ref|YP_003177402.1| - 0.019 15.4 0.0 0.041 14.3 0.0 1.6 1 0 0 1 1 1 0 Thioredoxin-like domain Thioredoxin PF00085.20 gi|257387629|ref|YP_003177402.1| - 0.051 13.6 0.0 0.098 12.7 0.0 1.4 1 0 0 1 1 1 0 Thioredoxin TrmB PF01978.19 gi|257387630|ref|YP_003177403.1| - 6.7e-19 67.5 0.0 1.4e-18 66.5 0.0 1.6 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB E2F_TDP PF02319.20 gi|257387630|ref|YP_003177403.1| - 0.0051 16.8 0.1 0.1 12.6 0.0 2.7 3 0 0 3 3 3 1 E2F/DP family winged-helix DNA-binding domain PadR PF03551.14 gi|257387630|ref|YP_003177403.1| - 0.013 15.5 0.0 0.034 14.1 0.0 1.7 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family PLDc_2 PF13091.6 gi|257387630|ref|YP_003177403.1| - 0.035 14.0 0.0 0.2 11.6 0.0 2.2 2 0 0 2 2 2 0 PLD-like domain DprA_WH PF17782.1 gi|257387630|ref|YP_003177403.1| - 0.035 14.2 0.1 0.23 11.6 0.0 2.4 2 0 0 2 2 2 0 DprA winged helix domain Val_tRNA-synt_C PF10458.9 gi|257387630|ref|YP_003177403.1| - 0.052 13.8 1.0 0.46 10.8 0.0 2.4 2 0 0 2 2 2 0 Valyl tRNA synthetase tRNA binding arm Holin_BhlA PF10960.8 gi|257387630|ref|YP_003177403.1| - 1.7 8.7 3.6 1.3 9.1 0.7 2.0 2 0 0 2 2 2 0 BhlA holin family Vir_act_alpha_C PF10400.9 gi|257387630|ref|YP_003177403.1| - 4 8.2 6.1 15 6.3 1.1 2.8 2 1 1 3 3 3 0 Virulence activator alpha C-term GCHY-1 PF02649.14 gi|257387631|ref|YP_003177404.1| - 4.7e-76 255.7 0.8 5.3e-76 255.5 0.8 1.0 1 0 0 1 1 1 1 Type I GTP cyclohydrolase folE2 REF PF05755.12 gi|257387631|ref|YP_003177404.1| - 0.1 12.4 0.0 0.22 11.3 0.0 1.5 1 0 0 1 1 1 0 Rubber elongation factor protein (REF) HalX PF08663.10 gi|257387632|ref|YP_003177405.1| - 6.4e-22 77.7 7.7 1e-21 77.0 6.3 2.1 2 0 0 2 2 2 1 HalX domain Response_reg PF00072.24 gi|257387632|ref|YP_003177405.1| - 1.8e-18 66.8 0.9 1.8e-18 66.8 0.9 1.9 2 0 0 2 2 2 1 Response regulator receiver domain ABC_tran_CTD PF16326.5 gi|257387632|ref|YP_003177405.1| - 0.013 15.7 3.0 0.22 11.8 2.3 2.7 2 1 1 3 3 3 0 ABC transporter C-terminal domain HetR_C PF18460.1 gi|257387632|ref|YP_003177405.1| - 0.022 14.7 0.2 0.042 13.8 0.2 1.5 1 0 0 1 1 1 0 Heterocyst differentiation regulator C-terminal Hood domain DnaG_DnaB_bind PF08278.11 gi|257387632|ref|YP_003177405.1| - 0.072 13.7 2.1 0.11 13.0 0.8 2.0 2 1 0 2 2 2 0 DNA primase DnaG DnaB-binding MetOD2 PF18548.1 gi|257387632|ref|YP_003177405.1| - 0.073 13.2 0.4 0.13 12.4 0.4 1.4 1 0 0 1 1 1 0 Metanogen output domain 2 PCRF PF03462.18 gi|257387632|ref|YP_003177405.1| - 0.087 12.7 0.4 0.23 11.3 0.2 1.6 2 0 0 2 2 2 0 PCRF domain AsnC_trans_reg2 PF17805.1 gi|257387633|ref|YP_003177406.1| - 2.8e-46 155.6 0.0 2.1e-23 82.3 0.0 2.3 2 0 0 2 2 2 2 AsnC-like ligand binding domain HTH_AsnC-type PF13404.6 gi|257387633|ref|YP_003177406.1| - 1.7e-06 27.8 0.6 0.06 13.2 0.0 2.8 2 0 0 2 2 2 2 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|257387633|ref|YP_003177406.1| - 0.0065 16.0 0.0 0.57 9.8 0.0 2.6 2 1 0 2 2 2 1 Winged helix-turn-helix DNA-binding OHCU_decarbox PF09349.10 gi|257387633|ref|YP_003177406.1| - 0.13 12.8 0.0 0.25 11.8 0.0 1.4 1 0 0 1 1 1 0 OHCU decarboxylase Glycos_transf_3 PF00591.21 gi|257387634|ref|YP_003177407.1| - 4e-28 98.7 0.0 6e-28 98.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.17 gi|257387634|ref|YP_003177407.1| - 2.1e-10 40.3 0.0 9.4e-10 38.2 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferase family, helical bundle domain MlaC PF05494.12 gi|257387634|ref|YP_003177407.1| - 0.023 14.4 0.0 0.047 13.4 0.0 1.5 1 0 0 1 1 1 0 MlaC protein Abhydrolase_1 PF00561.20 gi|257387635|ref|YP_003177408.1| - 4.6e-32 111.7 0.1 2.8e-31 109.1 0.1 1.9 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|257387635|ref|YP_003177408.1| - 4.4e-25 89.6 10.4 5.7e-25 89.2 10.4 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|257387635|ref|YP_003177408.1| - 1.2e-14 54.1 0.0 6e-14 51.9 0.0 1.8 1 1 0 1 1 1 1 Serine aminopeptidase, S33 DLH PF01738.18 gi|257387635|ref|YP_003177408.1| - 0.00091 18.8 0.0 0.97 8.9 0.0 3.0 2 1 0 2 2 2 2 Dienelactone hydrolase family DZR PF12773.7 gi|257387636|ref|YP_003177409.1| - 0.023 14.7 0.8 0.041 13.9 0.8 1.4 1 0 0 1 1 1 0 Double zinc ribbon TF_Zn_Ribbon PF08271.12 gi|257387636|ref|YP_003177409.1| - 0.19 11.3 3.2 0.18 11.3 0.6 1.7 1 1 1 2 2 2 0 TFIIB zinc-binding zinc_ribbon_2 PF13240.6 gi|257387636|ref|YP_003177409.1| - 0.6 9.9 2.4 1.6 8.5 1.0 2.1 2 0 0 2 2 2 0 zinc-ribbon domain Methyltransf_11 PF08241.12 gi|257387637|ref|YP_003177410.1| - 1.1e-15 58.1 0.0 1.7e-15 57.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|257387637|ref|YP_003177410.1| - 1.9e-15 57.3 0.0 3.1e-15 56.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|257387637|ref|YP_003177410.1| - 1.6e-08 34.5 0.0 2e-08 34.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|257387637|ref|YP_003177410.1| - 6.4e-06 26.8 0.0 1e-05 26.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|257387637|ref|YP_003177410.1| - 2.4e-05 24.2 0.0 3.2e-05 23.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|257387637|ref|YP_003177410.1| - 0.00024 20.5 0.0 0.00044 19.7 0.0 1.4 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_8 PF05148.15 gi|257387637|ref|YP_003177410.1| - 0.024 14.5 0.0 0.035 14.0 0.0 1.2 1 0 0 1 1 1 0 Hypothetical methyltransferase MetW PF07021.12 gi|257387637|ref|YP_003177410.1| - 0.12 11.9 0.0 0.16 11.5 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW Pox_MCEL PF03291.16 gi|257387637|ref|YP_003177410.1| - 0.24 10.5 0.0 0.56 9.2 0.0 1.5 2 0 0 2 2 2 0 mRNA capping enzyme TrkA_N PF02254.18 gi|257387638|ref|YP_003177411.1| - 1.1e-27 96.5 2.2 1.8e-27 95.9 2.2 1.3 1 0 0 1 1 1 1 TrkA-N domain NAD_binding_7 PF13241.6 gi|257387638|ref|YP_003177411.1| - 2.2e-05 24.8 0.5 4.2e-05 23.9 0.5 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding 3HCDH_N PF02737.18 gi|257387638|ref|YP_003177411.1| - 0.0037 17.2 0.6 0.0074 16.2 0.6 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|257387638|ref|YP_003177411.1| - 0.009 16.3 0.5 0.013 15.7 0.5 1.3 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain IlvN PF07991.12 gi|257387638|ref|YP_003177411.1| - 0.0092 15.6 0.1 0.017 14.7 0.1 1.4 1 1 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain Pyr_redox PF00070.27 gi|257387638|ref|YP_003177411.1| - 0.049 14.2 2.0 0.23 12.0 0.1 2.7 3 0 0 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_2 PF03446.15 gi|257387638|ref|YP_003177411.1| - 0.051 13.7 0.2 0.078 13.1 0.2 1.4 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase XdhC_C PF13478.6 gi|257387638|ref|YP_003177411.1| - 0.06 13.9 0.3 0.11 13.0 0.3 1.5 1 1 0 1 1 1 0 XdhC Rossmann domain F420_oxidored PF03807.17 gi|257387638|ref|YP_003177411.1| - 0.061 13.9 0.0 0.17 12.5 0.0 1.9 1 1 0 1 1 1 0 NADP oxidoreductase coenzyme F420-dependent ApbA PF02558.16 gi|257387638|ref|YP_003177411.1| - 0.078 12.6 0.1 0.11 12.1 0.1 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Staphylokinase PF02821.16 gi|257387638|ref|YP_003177411.1| - 0.19 12.1 0.0 0.29 11.6 0.0 1.2 1 0 0 1 1 1 0 Staphylokinase/Streptokinase family Pro_isomerase PF00160.21 gi|257387639|ref|YP_003177412.1| - 9.5e-49 165.7 0.0 1.1e-48 165.5 0.0 1.0 1 0 0 1 1 1 1 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD MFS_1_like PF12832.7 gi|257387640|ref|YP_003177413.1| - 5.8e-44 150.5 18.9 1.7e-43 149.0 18.9 1.6 1 1 0 1 1 1 1 MFS_1 like family MFS_1 PF07690.16 gi|257387640|ref|YP_003177413.1| - 2.3e-19 69.6 39.0 2.3e-19 69.6 39.0 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Nuc_H_symport PF03825.16 gi|257387640|ref|YP_003177413.1| - 2.5e-10 39.9 20.5 3.5e-10 39.4 20.5 1.1 1 0 0 1 1 1 1 Nucleoside H+ symporter LacY_symp PF01306.19 gi|257387640|ref|YP_003177413.1| - 8.1e-07 28.1 18.2 6.5e-06 25.2 18.2 2.2 1 1 0 1 1 1 1 LacY proton/sugar symporter Fer4_15 PF13459.6 gi|257387641|ref|YP_003177414.1| - 0.00047 20.8 2.2 0.00066 20.4 0.9 1.9 1 1 1 2 2 2 1 4Fe-4S single cluster domain Fer4_6 PF12837.7 gi|257387641|ref|YP_003177414.1| - 0.068 13.3 0.8 0.44 10.7 0.1 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_2 PF12797.7 gi|257387641|ref|YP_003177414.1| - 0.19 11.9 1.1 0.72 10.1 0.0 2.2 2 0 0 2 2 2 0 4Fe-4S binding domain ABC_tran PF00005.27 gi|257387642|ref|YP_003177415.1| - 4.5e-32 111.4 0.0 7.2e-32 110.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|257387642|ref|YP_003177415.1| - 9.5e-17 61.3 0.1 1.8e-16 60.4 0.1 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_16 PF13191.6 gi|257387642|ref|YP_003177415.1| - 0.00035 21.0 0.0 0.00071 20.0 0.0 1.5 1 0 0 1 1 1 1 AAA ATPase domain SMC_N PF02463.19 gi|257387642|ref|YP_003177415.1| - 0.00056 19.4 0.0 0.00083 18.8 0.0 1.2 1 0 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|257387642|ref|YP_003177415.1| - 0.00072 19.8 0.0 0.005 17.1 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_21 PF13304.6 gi|257387642|ref|YP_003177415.1| - 0.0037 17.1 0.1 3.8 7.2 0.0 2.5 2 1 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system RNA_helicase PF00910.22 gi|257387642|ref|YP_003177415.1| - 0.0041 17.5 0.0 0.0072 16.7 0.0 1.4 1 0 0 1 1 1 1 RNA helicase AAA PF00004.29 gi|257387642|ref|YP_003177415.1| - 0.0073 16.7 0.0 0.018 15.5 0.0 1.6 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) ATP-synt_ab PF00006.25 gi|257387642|ref|YP_003177415.1| - 0.011 15.4 0.0 0.012 15.3 0.0 1.3 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_5 PF07728.14 gi|257387642|ref|YP_003177415.1| - 0.014 15.4 0.0 0.027 14.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) NACHT PF05729.12 gi|257387642|ref|YP_003177415.1| - 0.017 15.1 0.0 0.034 14.0 0.0 1.5 1 0 0 1 1 1 0 NACHT domain RsgA_GTPase PF03193.16 gi|257387642|ref|YP_003177415.1| - 0.021 14.7 0.0 0.038 13.9 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_29 PF13555.6 gi|257387642|ref|YP_003177415.1| - 0.03 14.1 0.0 0.055 13.2 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain NB-ARC PF00931.22 gi|257387642|ref|YP_003177415.1| - 0.031 13.4 0.0 0.06 12.5 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain PRK PF00485.18 gi|257387642|ref|YP_003177415.1| - 0.036 13.8 0.0 0.06 13.1 0.0 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family G-alpha PF00503.20 gi|257387642|ref|YP_003177415.1| - 0.079 12.1 0.0 0.13 11.4 0.0 1.4 1 1 0 1 1 1 0 G-protein alpha subunit MMR_HSR1 PF01926.23 gi|257387642|ref|YP_003177415.1| - 0.11 12.5 0.0 0.2 11.7 0.0 1.4 1 0 0 1 1 1 0 50S ribosome-binding GTPase Sigma54_activat PF00158.26 gi|257387642|ref|YP_003177415.1| - 0.16 11.7 0.0 0.52 10.0 0.0 1.7 2 0 0 2 2 2 0 Sigma-54 interaction domain IstB_IS21 PF01695.17 gi|257387642|ref|YP_003177415.1| - 0.21 11.3 0.0 0.36 10.5 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein ABC_tran PF00005.27 gi|257387643|ref|YP_003177416.1| - 1.9e-24 86.7 0.0 3.3e-24 85.9 0.0 1.4 1 1 0 1 1 1 1 ABC transporter oligo_HPY PF08352.12 gi|257387643|ref|YP_003177416.1| - 2.7e-18 66.2 0.3 4.7e-18 65.5 0.3 1.4 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.6 gi|257387643|ref|YP_003177416.1| - 0.00037 20.4 0.0 0.0083 16.0 0.0 2.1 1 1 1 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|257387643|ref|YP_003177416.1| - 0.055 13.9 0.0 0.12 12.7 0.0 1.6 1 0 0 1 1 1 0 AAA ATPase domain BPD_transp_1 PF00528.22 gi|257387644|ref|YP_003177417.1| - 2.5e-30 105.6 8.6 2.5e-30 105.6 8.6 1.9 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.7 gi|257387644|ref|YP_003177417.1| - 5.9e-05 22.9 0.3 5.9e-05 22.9 0.3 3.9 4 0 0 4 4 4 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.22 gi|257387645|ref|YP_003177418.1| - 1.6e-44 151.9 9.2 1.6e-44 151.9 9.2 1.7 3 0 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.22 gi|257387646|ref|YP_003177419.1| - 3.6e-62 210.5 4.7 4.8e-62 210.1 4.7 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.9 gi|257387646|ref|YP_003177419.1| - 0.089 12.7 0.9 0.15 12.0 0.9 1.3 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF4184 PF13803.6 gi|257387647|ref|YP_003177420.1| - 0.098 12.4 8.3 0.13 11.9 8.3 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4184) YdjM PF04307.14 gi|257387647|ref|YP_003177420.1| - 0.24 10.7 5.9 0.4 10.0 5.9 1.6 1 1 0 1 1 1 0 LexA-binding, inner membrane-associated putative hydrolase Ribosomal_L18p PF00861.22 gi|257387648|ref|YP_003177421.1| - 0.097 13.1 0.2 0.19 12.1 0.2 1.4 1 0 0 1 1 1 0 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AsnC_trans_reg PF01037.21 gi|257387649|ref|YP_003177422.1| - 2e-14 53.3 0.5 2.3e-14 53.1 0.5 1.1 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain TrkA_N PF02254.18 gi|257387650|ref|YP_003177423.1| - 3e-25 88.7 0.4 4.5e-25 88.2 0.4 1.3 1 0 0 1 1 1 1 TrkA-N domain TrkA_C PF02080.21 gi|257387650|ref|YP_003177423.1| - 7.3e-11 41.7 0.1 1.9e-10 40.4 0.1 1.7 1 0 0 1 1 1 1 TrkA-C domain UDPG_MGDP_dh_N PF03721.14 gi|257387650|ref|YP_003177423.1| - 4.3e-06 26.4 0.1 8e-06 25.5 0.1 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Pyr_redox_2 PF07992.14 gi|257387650|ref|YP_003177423.1| - 0.00034 19.9 0.0 0.00084 18.7 0.0 1.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.6 gi|257387650|ref|YP_003177423.1| - 0.00047 20.6 0.1 0.00074 19.9 0.1 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding FAD_binding_3 PF01494.19 gi|257387650|ref|YP_003177423.1| - 0.00048 19.5 0.0 0.00052 19.4 0.0 1.2 1 0 0 1 1 1 1 FAD binding domain ApbA PF02558.16 gi|257387650|ref|YP_003177423.1| - 0.00056 19.6 0.0 0.00084 19.0 0.0 1.3 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.18 gi|257387650|ref|YP_003177423.1| - 0.0009 19.2 0.1 0.0013 18.7 0.1 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_binding_2 PF00890.24 gi|257387650|ref|YP_003177423.1| - 0.0066 15.6 0.1 0.0069 15.5 0.1 1.1 1 0 0 1 1 1 1 FAD binding domain DAO PF01266.24 gi|257387650|ref|YP_003177423.1| - 0.0079 15.8 0.1 0.012 15.2 0.1 1.3 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|257387650|ref|YP_003177423.1| - 0.0098 16.4 0.2 0.022 15.3 0.2 1.6 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase AdoHcyase_NAD PF00670.21 gi|257387650|ref|YP_003177423.1| - 0.015 15.4 0.1 0.04 14.0 0.1 1.8 2 0 0 2 2 2 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain XdhC_C PF13478.6 gi|257387650|ref|YP_003177423.1| - 0.015 15.8 0.1 0.023 15.2 0.1 1.4 1 0 0 1 1 1 0 XdhC Rossmann domain IlvN PF07991.12 gi|257387650|ref|YP_003177423.1| - 0.015 14.8 0.0 0.024 14.2 0.0 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain NAD_binding_8 PF13450.6 gi|257387650|ref|YP_003177423.1| - 0.021 15.0 0.1 0.055 13.7 0.1 1.7 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain 2-Hacid_dh_C PF02826.19 gi|257387650|ref|YP_003177423.1| - 0.029 13.8 0.1 0.048 13.0 0.1 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Epimerase PF01370.21 gi|257387650|ref|YP_003177423.1| - 0.058 12.8 0.1 0.083 12.3 0.1 1.3 1 0 0 1 1 1 0 NAD dependent epimerase/dehydratase family NAD_binding_10 PF13460.6 gi|257387650|ref|YP_003177423.1| - 0.084 12.8 0.5 0.14 12.1 0.5 1.3 1 0 0 1 1 1 0 NAD(P)H-binding Arginase PF00491.21 gi|257387651|ref|YP_003177424.1| - 1.7e-50 172.1 0.7 2.3e-50 171.7 0.7 1.2 1 0 0 1 1 1 1 Arginase family EFP_N PF08207.12 gi|257387652|ref|YP_003177425.1| - 0.0031 17.5 0.0 0.013 15.5 0.0 1.8 2 0 0 2 2 2 1 Elongation factor P (EF-P) KOW-like domain eIF-5a PF01287.20 gi|257387652|ref|YP_003177425.1| - 0.0057 16.7 0.9 0.0083 16.2 0.9 1.3 1 0 0 1 1 1 1 Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold ABC1 PF03109.16 gi|257387654|ref|YP_003177427.1| - 5.9e-27 94.2 0.0 1.3e-26 93.1 0.0 1.6 1 0 0 1 1 1 1 ABC1 family Pkinase PF00069.25 gi|257387654|ref|YP_003177427.1| - 0.00061 19.2 0.0 0.0011 18.3 0.0 1.4 1 0 0 1 1 1 1 Protein kinase domain APH PF01636.23 gi|257387654|ref|YP_003177427.1| - 0.0044 17.0 1.4 0.049 13.6 0.2 2.8 3 1 1 4 4 4 1 Phosphotransferase enzyme family HSP20 PF00011.21 gi|257387655|ref|YP_003177428.1| - 2.3e-08 34.1 0.0 2.5e-08 34.0 0.0 1.0 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|257387655|ref|YP_003177428.1| - 9e-06 25.2 0.0 1.4e-05 24.5 0.0 1.5 1 0 0 1 1 1 1 HSP20-like domain found in ArsA GvpH PF05455.11 gi|257387655|ref|YP_003177428.1| - 0.00067 19.8 0.6 0.0013 18.9 0.6 1.5 2 0 0 2 2 2 1 GvpH MoCF_biosynth PF00994.24 gi|257387656|ref|YP_003177429.1| - 1.7e-10 40.7 0.2 3.2e-10 39.8 0.2 1.5 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|257387656|ref|YP_003177429.1| - 3.2e-05 24.0 0.0 9.9e-05 22.5 0.0 1.9 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) MoeA_N PF03453.17 gi|257387656|ref|YP_003177429.1| - 0.00086 19.1 6.1 0.0036 17.1 0.4 3.1 3 1 1 4 4 4 2 MoeA N-terminal region (domain I and II) HAD_2 PF13419.6 gi|257387657|ref|YP_003177430.1| - 3e-16 60.0 0.0 4.4e-16 59.5 0.0 1.3 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|257387657|ref|YP_003177430.1| - 8.3e-07 29.5 0.0 6.8e-05 23.3 0.0 2.1 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|257387657|ref|YP_003177430.1| - 0.00035 21.0 0.1 0.00049 20.5 0.1 1.3 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|257387657|ref|YP_003177430.1| - 0.013 15.6 0.6 0.035 14.2 0.2 1.9 2 0 0 2 2 2 0 HAD-hyrolase-like YhhN PF07947.14 gi|257387658|ref|YP_003177431.1| - 0.035 13.7 8.7 0.056 13.0 8.7 1.3 1 0 0 1 1 1 0 YhhN family DUF2157 PF09925.9 gi|257387658|ref|YP_003177431.1| - 0.6 9.9 14.4 0.31 10.8 12.1 1.7 1 1 1 2 2 2 0 Predicted membrane protein (DUF2157) HupE_UreJ PF04955.12 gi|257387658|ref|YP_003177431.1| - 0.61 9.5 8.1 1 8.8 8.1 1.4 1 1 0 1 1 1 0 HupE / UreJ protein DUF4131 PF13567.6 gi|257387658|ref|YP_003177431.1| - 2.2 7.9 11.3 8.8 5.9 5.1 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) Bax1-I PF01027.20 gi|257387658|ref|YP_003177431.1| - 3.2 7.5 17.2 2.3 8.0 15.1 1.6 1 1 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 Pterin_4a PF01329.19 gi|257387659|ref|YP_003177432.1| - 5.3e-25 87.4 0.0 5.8e-25 87.3 0.0 1.0 1 0 0 1 1 1 1 Pterin 4 alpha carbinolamine dehydratase IF-2 PF11987.8 gi|257387659|ref|YP_003177432.1| - 0.051 13.7 0.0 0.071 13.2 0.0 1.2 1 0 0 1 1 1 0 Translation-initiation factor 2 GlutR_N PF05201.15 gi|257387660|ref|YP_003177433.1| - 4.7e-35 120.5 0.8 1.2e-34 119.2 0.8 1.7 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, N-terminal domain Shikimate_DH PF01488.20 gi|257387660|ref|YP_003177433.1| - 2e-25 89.4 1.2 4.1e-25 88.4 0.1 2.0 2 0 0 2 2 2 1 Shikimate / quinate 5-dehydrogenase GlutR_dimer PF00745.20 gi|257387660|ref|YP_003177433.1| - 9.9e-22 77.2 1.1 9.9e-22 77.2 1.1 1.8 2 0 0 2 2 2 1 Glutamyl-tRNAGlu reductase, dimerisation domain NAD_binding_7 PF13241.6 gi|257387660|ref|YP_003177433.1| - 0.00035 21.0 1.0 0.00069 20.0 0.4 1.8 1 1 1 2 2 2 1 Putative NAD(P)-binding NAD_binding_2 PF03446.15 gi|257387660|ref|YP_003177433.1| - 0.0013 18.9 1.5 0.0031 17.7 0.1 2.2 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|257387660|ref|YP_003177433.1| - 0.0026 17.2 0.1 0.0049 16.2 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain zf-C4H2 PF10146.9 gi|257387660|ref|YP_003177433.1| - 0.11 12.8 0.2 0.19 12.0 0.2 1.4 1 0 0 1 1 1 0 Zinc finger-containing protein TrkA_N PF02254.18 gi|257387660|ref|YP_003177433.1| - 0.53 10.6 4.7 0.97 9.7 0.4 3.0 1 1 2 3 3 3 0 TrkA-N domain NAD_binding_7 PF13241.6 gi|257387661|ref|YP_003177434.1| - 5.2e-24 84.7 0.1 9.6e-24 83.8 0.1 1.4 1 0 0 1 1 1 1 Putative NAD(P)-binding Sirohm_synth_M PF14824.6 gi|257387661|ref|YP_003177434.1| - 1.9e-06 27.2 0.0 3.8e-06 26.2 0.0 1.6 1 0 0 1 1 1 1 Sirohaem biosynthesis protein central CysG_dimeriser PF10414.9 gi|257387661|ref|YP_003177434.1| - 0.0048 16.6 0.5 0.02 14.6 0.5 2.1 1 0 0 1 1 1 1 Sirohaem synthase dimerisation region DUF2849 PF11011.8 gi|257387661|ref|YP_003177434.1| - 0.21 12.3 6.1 1.9 9.2 1.2 2.9 1 1 2 3 3 3 0 Protein of unknown function (DUF2849) DUF5403 PF17395.2 gi|257387661|ref|YP_003177434.1| - 0.76 10.1 4.6 0.28 11.5 0.8 2.2 2 1 0 2 2 2 0 Family of unknown function (DUF5403) AsnC_trans_reg2 PF17805.1 gi|257387662|ref|YP_003177435.1| - 1.4e-49 166.2 0.2 4.1e-24 84.5 0.0 2.4 2 0 0 2 2 2 2 AsnC-like ligand binding domain DZR PF12773.7 gi|257387663|ref|YP_003177436.1| - 0.0022 18.0 3.1 0.0032 17.5 3.1 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|257387663|ref|YP_003177436.1| - 0.0036 17.0 2.4 0.0049 16.5 2.4 1.2 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|257387663|ref|YP_003177436.1| - 0.012 16.3 0.1 0.014 16.1 0.1 1.2 1 0 0 1 1 1 0 zinc-ribbon family zf-ribbon_3 PF13248.6 gi|257387663|ref|YP_003177436.1| - 0.026 13.9 2.0 0.038 13.4 2.0 1.3 1 0 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_9 PF14369.6 gi|257387663|ref|YP_003177436.1| - 0.045 14.0 3.0 2.9 8.2 0.1 2.3 2 0 0 2 2 2 0 zinc-ribbon zf-tcix PF14952.6 gi|257387663|ref|YP_003177436.1| - 0.14 11.8 3.0 0.21 11.2 3.0 1.2 1 0 0 1 1 1 0 Putative treble-clef, zinc-finger, Zn-binding NRDD PF13597.6 gi|257387663|ref|YP_003177436.1| - 0.21 10.3 1.1 0.24 10.2 1.1 1.0 1 0 0 1 1 1 0 Anaerobic ribonucleoside-triphosphate reductase Zn-ribbon_8 PF09723.10 gi|257387663|ref|YP_003177436.1| - 1.2 9.3 5.8 0.57 10.3 0.7 2.1 1 1 1 2 2 2 0 Zinc ribbon domain Auto_anti-p27 PF06677.12 gi|257387664|ref|YP_003177437.1| - 0.095 12.9 0.8 37 4.6 0.0 3.2 3 0 0 3 3 3 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DZR PF12773.7 gi|257387664|ref|YP_003177437.1| - 0.23 11.5 3.8 12 6.0 0.2 2.6 2 2 0 2 2 2 0 Double zinc ribbon Cys_rich_CPXG PF14255.6 gi|257387664|ref|YP_003177437.1| - 3.7 7.5 7.9 2.5 8.1 0.1 3.5 4 0 0 4 4 4 0 Cysteine-rich CPXCG zf-P11 PF03854.14 gi|257387664|ref|YP_003177437.1| - 8 6.2 7.2 31 4.3 0.5 3.5 3 1 0 3 3 3 0 P-11 zinc finger Protoglobin PF11563.8 gi|257387665|ref|YP_003177438.1| - 0.0098 15.8 0.0 0.0098 15.8 0.0 1.1 1 0 0 1 1 1 1 Protoglobin PEP-CTERM PF07589.11 gi|257387666|ref|YP_003177439.1| - 7.8 6.8 15.5 1.4 9.1 4.9 3.2 2 1 1 3 3 3 0 PEP-CTERM motif MFS_1 PF07690.16 gi|257387667|ref|YP_003177440.1| - 1.9e-40 138.9 44.8 3.2e-29 102.0 21.1 2.1 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_2 PF13347.6 gi|257387667|ref|YP_003177440.1| - 9.6e-06 24.4 23.8 0.0011 17.7 7.9 2.7 1 1 2 3 3 3 3 MFS/sugar transport protein MFS_1_like PF12832.7 gi|257387667|ref|YP_003177440.1| - 0.00064 18.7 13.1 0.041 12.7 8.0 2.5 2 1 0 2 2 2 2 MFS_1 like family DUF3992 PF13157.6 gi|257387668|ref|YP_003177441.1| - 0.015 16.0 1.3 0.023 15.4 1.3 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3992) Copper-bind PF00127.20 gi|257387669|ref|YP_003177442.1| - 5.3e-16 58.9 0.0 6.6e-16 58.6 0.0 1.1 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.6 gi|257387669|ref|YP_003177442.1| - 0.00046 20.3 0.0 0.00078 19.5 0.0 1.4 1 1 0 1 1 1 1 Cupredoxin-like domain Oxidored_FMN PF00724.20 gi|257387670|ref|YP_003177443.1| - 3.2e-68 230.5 0.0 3.9e-68 230.2 0.0 1.0 1 0 0 1 1 1 1 NADH:flavin oxidoreductase / NADH oxidase family Dus PF01207.17 gi|257387670|ref|YP_003177443.1| - 0.0095 15.1 0.0 0.013 14.6 0.0 1.3 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) Glyoxalase PF00903.25 gi|257387671|ref|YP_003177444.1| - 2e-27 95.9 0.0 2.5e-12 47.1 0.2 2.8 2 1 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|257387671|ref|YP_003177444.1| - 1.1e-06 28.8 0.1 0.28 11.5 0.0 3.3 2 1 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.6 gi|257387671|ref|YP_003177444.1| - 0.1 12.7 3.4 22 5.1 0.1 3.3 2 1 2 4 4 4 0 Glyoxalase-like domain DUF560 PF04575.13 gi|257387671|ref|YP_003177444.1| - 0.27 10.6 0.0 0.4 10.1 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF560) Glyoxalase_6 PF18029.1 gi|257387671|ref|YP_003177444.1| - 0.97 10.3 5.4 4.1 8.2 0.5 3.2 2 1 0 2 2 2 0 Glyoxalase-like domain THUMP PF02926.17 gi|257387672|ref|YP_003177445.1| - 1.4e-08 34.9 0.0 4.2e-08 33.4 0.0 1.8 2 0 0 2 2 2 1 THUMP domain DnaJ_CXXCXGXG PF00684.19 gi|257387672|ref|YP_003177445.1| - 0.0046 17.3 2.5 0.045 14.1 0.9 2.7 3 0 0 3 3 3 1 DnaJ central domain GtrA PF04138.14 gi|257387673|ref|YP_003177446.1| - 3.1e-22 79.0 10.5 3.6e-22 78.8 10.5 1.1 1 0 0 1 1 1 1 GtrA-like protein Sulfatase PF00884.23 gi|257387674|ref|YP_003177447.1| - 2e-40 139.1 0.1 2.6e-40 138.7 0.1 1.2 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 gi|257387674|ref|YP_003177447.1| - 4.9e-09 36.3 1.0 0.00014 21.6 0.5 2.3 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase HAT PF02184.16 gi|257387674|ref|YP_003177447.1| - 0.018 15.0 0.0 0.053 13.5 0.0 1.7 1 0 0 1 1 1 0 HAT (Half-A-TPR) repeat DUF1501 PF07394.12 gi|257387674|ref|YP_003177447.1| - 0.044 12.8 0.1 0.08 12.0 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1501) DUF229 PF02995.17 gi|257387674|ref|YP_003177447.1| - 0.18 10.4 0.3 0.26 9.8 0.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF229) BacA PF02673.18 gi|257387675|ref|YP_003177448.1| - 2.9e-43 148.4 14.0 3.5e-43 148.2 14.0 1.0 1 0 0 1 1 1 1 Bacitracin resistance protein BacA CheF-arch PF04283.12 gi|257387676|ref|YP_003177449.1| - 7.6e-56 189.3 0.0 1.4e-55 188.4 0.0 1.5 1 0 0 1 1 1 1 Chemotaxis signal transduction system protein F from archaea TrmB PF01978.19 gi|257387676|ref|YP_003177449.1| - 0.12 12.3 0.1 0.23 11.4 0.1 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB CheF-arch PF04283.12 gi|257387677|ref|YP_003177450.1| - 1.2e-68 231.1 2.4 1.9e-68 230.5 2.4 1.3 1 0 0 1 1 1 1 Chemotaxis signal transduction system protein F from archaea NTP_transferase PF00483.23 gi|257387678|ref|YP_003177451.1| - 2.8e-36 125.4 0.0 3.4e-36 125.1 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|257387678|ref|YP_003177451.1| - 7.3e-18 65.4 0.2 7.3e-18 65.4 0.2 2.4 1 1 0 2 2 2 1 MobA-like NTP transferase domain Hexapep PF00132.24 gi|257387678|ref|YP_003177451.1| - 8.5e-10 38.0 1.9 4.1e-06 26.3 0.7 4.0 3 1 1 4 4 4 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|257387678|ref|YP_003177451.1| - 0.0014 18.3 5.1 1.1 9.1 0.1 4.0 3 1 0 4 4 4 2 Hexapeptide repeat of succinyl-transferase SIS PF01380.22 gi|257387679|ref|YP_003177452.1| - 3.2e-50 169.4 0.0 2.7e-24 85.5 0.0 2.7 3 0 0 3 3 3 2 SIS domain GATase_6 PF13522.6 gi|257387679|ref|YP_003177452.1| - 2.1e-21 76.5 0.2 5.6e-21 75.2 0.2 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|257387679|ref|YP_003177452.1| - 1.2e-16 60.8 0.0 2.4e-16 59.7 0.0 1.5 1 0 0 1 1 1 1 Glutamine amidotransferase domain SIS_2 PF13580.6 gi|257387679|ref|YP_003177452.1| - 0.0082 16.2 0.0 0.19 11.8 0.0 2.5 2 0 0 2 2 2 1 SIS domain GATase_4 PF13230.6 gi|257387679|ref|YP_003177452.1| - 0.1 11.5 0.0 0.17 10.8 0.0 1.3 1 0 0 1 1 1 0 Glutamine amidotransferases class-II CPSase_L_D2 PF02786.17 gi|257387680|ref|YP_003177453.1| - 7.6e-89 296.8 1.1 6.3e-57 192.5 0.0 3.2 2 2 0 2 2 2 2 Carbamoyl-phosphate synthase L chain, ATP binding domain CPSase_L_D3 PF02787.19 gi|257387680|ref|YP_003177453.1| - 5.3e-28 97.8 0.0 1.2e-27 96.6 0.0 1.6 1 0 0 1 1 1 1 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ATPgrasp_Ter PF15632.6 gi|257387680|ref|YP_003177453.1| - 2.3e-12 46.8 0.0 2.9e-06 27.1 0.0 2.7 2 0 0 2 2 2 2 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp PF02222.22 gi|257387680|ref|YP_003177453.1| - 5.7e-09 35.8 0.1 0.0079 15.8 0.0 3.4 2 1 0 2 2 2 2 ATP-grasp domain Dala_Dala_lig_C PF07478.13 gi|257387680|ref|YP_003177453.1| - 6.5e-09 35.6 0.0 9.7e-06 25.3 0.0 2.6 2 0 0 2 2 2 2 D-ala D-ala ligase C-terminus ATP-grasp_3 PF02655.14 gi|257387680|ref|YP_003177453.1| - 9.3e-07 29.0 0.2 0.026 14.6 0.0 3.1 3 0 0 3 3 3 2 ATP-grasp domain GARS_A PF01071.19 gi|257387680|ref|YP_003177453.1| - 0.053 13.3 0.2 0.22 11.3 0.0 2.2 2 1 0 2 2 2 0 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ATP-grasp_5 PF13549.6 gi|257387680|ref|YP_003177453.1| - 0.073 12.5 0.0 0.42 10.0 0.0 2.4 2 1 0 2 2 2 0 ATP-grasp domain DUF5057 PF16480.5 gi|257387680|ref|YP_003177453.1| - 0.1 12.0 0.2 0.18 11.1 0.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF5057) DEK_C PF08766.11 gi|257387681|ref|YP_003177454.1| - 0.093 12.7 0.0 0.13 12.2 0.0 1.2 1 0 0 1 1 1 0 DEK C terminal domain DUF3253 PF11625.8 gi|257387681|ref|YP_003177454.1| - 0.1 12.8 0.0 0.14 12.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3253) MCPsignal PF00015.21 gi|257387683|ref|YP_003177456.1| - 3.1e-41 141.0 72.2 3.5e-40 137.6 25.7 4.8 1 1 4 5 5 5 2 Methyl-accepting chemotaxis protein (MCP) signalling domain RPW8 PF05659.11 gi|257387683|ref|YP_003177456.1| - 0.0016 18.2 17.0 0.72 9.5 0.6 5.2 3 2 2 6 6 6 2 Arabidopsis broad-spectrum mildew resistance protein RPW8 HAMP PF00672.25 gi|257387683|ref|YP_003177456.1| - 0.0023 18.3 0.4 0.0023 18.3 0.4 5.2 5 2 0 5 5 5 1 HAMP domain DUF1664 PF07889.12 gi|257387683|ref|YP_003177456.1| - 0.017 15.1 39.1 0.11 12.6 2.8 5.4 3 2 2 5 5 5 0 Protein of unknown function (DUF1664) DUF2203 PF09969.9 gi|257387683|ref|YP_003177456.1| - 0.026 15.3 46.8 1.2 9.9 0.7 5.3 2 2 2 5 5 5 0 Uncharacterized conserved protein (DUF2203) DUF948 PF06103.11 gi|257387683|ref|YP_003177456.1| - 0.029 14.6 44.3 0.029 14.6 2.3 6.6 3 2 2 5 5 5 0 Bacterial protein of unknown function (DUF948) Mod_r PF07200.13 gi|257387683|ref|YP_003177456.1| - 0.14 12.2 46.4 0.28 11.3 0.7 4.9 1 1 2 4 4 4 0 Modifier of rudimentary (Mod(r)) protein YtxH PF12732.7 gi|257387683|ref|YP_003177456.1| - 0.24 11.9 0.1 0.24 11.9 0.1 6.3 3 2 1 4 4 3 0 YtxH-like protein Mce4_CUP1 PF11887.8 gi|257387683|ref|YP_003177456.1| - 0.48 9.8 20.8 0.16 11.4 1.7 3.6 1 1 1 3 3 3 0 Cholesterol uptake porter CUP1 of Mce4, putative EzrA PF06160.12 gi|257387683|ref|YP_003177456.1| - 1.5 6.9 43.3 6.2 4.9 29.7 2.6 1 1 1 2 2 2 0 Septation ring formation regulator, EzrA Syntaxin-6_N PF09177.11 gi|257387683|ref|YP_003177456.1| - 1.6 9.3 47.0 0.079 13.5 1.4 5.5 2 2 3 5 5 5 0 Syntaxin 6, N-terminal PhaC_N PF07167.13 gi|257387683|ref|YP_003177456.1| - 1.8 8.2 5.1 7.3 6.2 0.6 3.2 1 1 1 3 3 3 0 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus FPN1 PF06963.12 gi|257387683|ref|YP_003177456.1| - 1.9 6.9 4.3 0.81 8.2 0.4 2.3 2 0 0 2 2 2 0 Ferroportin1 (FPN1) Laminin_II PF06009.12 gi|257387683|ref|YP_003177456.1| - 3.9 7.5 49.4 0.18 11.8 1.6 5.8 2 2 2 4 4 4 0 Laminin Domain II Spc7 PF08317.11 gi|257387683|ref|YP_003177456.1| - 4 6.2 58.5 0.11 11.4 14.8 3.9 1 1 2 4 4 4 0 Spc7 kinetochore protein Fib_alpha PF08702.10 gi|257387683|ref|YP_003177456.1| - 4.5 7.5 38.8 1.3 9.2 3.3 4.4 2 2 2 5 5 5 0 Fibrinogen alpha/beta chain family LXG PF04740.12 gi|257387683|ref|YP_003177456.1| - 6.1 6.5 50.1 0.02 14.6 9.2 4.3 1 1 3 4 4 4 0 LXG domain of WXG superfamily APG17 PF04108.12 gi|257387683|ref|YP_003177456.1| - 9.9 5.2 44.3 0.6 9.2 10.4 4.1 1 1 4 5 5 5 0 Autophagy protein Apg17 7TMR-DISM_7TM PF07695.11 gi|257387684|ref|YP_003177457.1| - 0.0027 17.6 3.4 0.0031 17.5 3.4 1.0 1 0 0 1 1 1 1 7TM diverse intracellular signalling YhhN PF07947.14 gi|257387684|ref|YP_003177457.1| - 0.03 13.9 1.3 0.04 13.5 1.3 1.2 1 0 0 1 1 1 0 YhhN family DUF2368 PF10166.9 gi|257387684|ref|YP_003177457.1| - 0.23 11.1 0.2 0.59 9.7 0.1 1.7 1 1 1 2 2 2 0 Uncharacterised conserved protein (DUF2368) DUF4337 PF14235.6 gi|257387684|ref|YP_003177457.1| - 1.8 8.6 4.5 0.58 10.3 1.4 1.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4337) CrgA PF06781.12 gi|257387684|ref|YP_003177457.1| - 7 6.8 7.1 3.9 7.6 0.1 2.5 2 1 0 2 2 2 0 Cell division protein CrgA Hydrolase_like PF13242.6 gi|257387685|ref|YP_003177458.1| - 0.019 15.0 0.1 0.082 13.0 0.0 2.1 2 1 1 3 3 3 0 HAD-hyrolase-like Pyr_redox_2 PF07992.14 gi|257387687|ref|YP_003177460.1| - 4.6e-45 154.1 0.3 5.8e-45 153.8 0.3 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|257387687|ref|YP_003177460.1| - 5.3e-10 39.0 0.0 1.7e-09 37.4 0.0 1.7 1 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Rubredoxin_C PF18267.1 gi|257387687|ref|YP_003177460.1| - 8.6e-10 38.4 0.0 7.4e-08 32.2 0.0 3.4 4 0 0 4 4 4 1 Rubredoxin NAD+ reductase C-terminal domain Pyr_redox PF00070.27 gi|257387687|ref|YP_003177460.1| - 1e-07 32.4 0.4 0.0072 16.9 0.0 3.4 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|257387687|ref|YP_003177460.1| - 0.00039 19.2 0.2 0.05 12.3 0.0 2.6 3 0 0 3 3 3 2 HI0933-like protein Amino_oxidase PF01593.24 gi|257387687|ref|YP_003177460.1| - 0.01 15.2 0.0 0.073 12.4 0.0 2.0 2 1 0 2 2 2 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|257387687|ref|YP_003177460.1| - 0.01 16.1 2.5 1 9.6 0.0 3.5 3 0 0 3 3 3 0 NAD(P)-binding Rossmann-like domain Trp_halogenase PF04820.14 gi|257387687|ref|YP_003177460.1| - 0.086 11.7 0.1 4.4 6.0 0.0 2.2 2 0 0 2 2 2 0 Tryptophan halogenase FAD_binding_2 PF00890.24 gi|257387687|ref|YP_003177460.1| - 1.9 7.5 9.1 4.4 6.3 0.0 3.3 3 0 0 3 3 3 0 FAD binding domain MCPsignal PF00015.21 gi|257387689|ref|YP_003177462.1| - 4.6e-42 143.7 58.4 3.5e-41 140.9 25.9 4.2 1 1 4 5 5 5 2 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF948 PF06103.11 gi|257387689|ref|YP_003177462.1| - 7.9e-11 42.1 41.4 0.00086 19.5 1.7 7.0 3 1 3 6 6 6 3 Bacterial protein of unknown function (DUF948) BLOC1_2 PF10046.9 gi|257387689|ref|YP_003177462.1| - 1.3e-07 31.8 19.9 0.2 12.0 1.8 6.3 4 2 1 5 5 5 3 Biogenesis of lysosome-related organelles complex-1 subunit 2 HAMP PF00672.25 gi|257387689|ref|YP_003177462.1| - 1.6e-06 28.4 22.9 7.7e-05 23.0 1.2 5.8 5 1 1 6 6 5 2 HAMP domain DUF1664 PF07889.12 gi|257387689|ref|YP_003177462.1| - 1.4e-05 25.1 25.6 0.39 10.8 1.0 5.6 3 2 2 5 5 5 3 Protein of unknown function (DUF1664) AAA_13 PF13166.6 gi|257387689|ref|YP_003177462.1| - 5e-05 22.2 21.7 0.0027 16.4 4.5 2.2 2 0 0 2 2 2 2 AAA domain Laminin_II PF06009.12 gi|257387689|ref|YP_003177462.1| - 0.00012 22.1 34.3 0.082 12.9 7.6 5.9 3 2 3 6 6 6 3 Laminin Domain II Fib_alpha PF08702.10 gi|257387689|ref|YP_003177462.1| - 0.0026 17.9 10.5 3 8.0 0.5 4.8 2 2 2 5 5 5 1 Fibrinogen alpha/beta chain family NPV_P10 PF05531.12 gi|257387689|ref|YP_003177462.1| - 0.0028 18.1 27.9 0.1 13.1 1.5 6.0 4 2 2 6 6 5 2 Nucleopolyhedrovirus P10 protein RPW8 PF05659.11 gi|257387689|ref|YP_003177462.1| - 0.0038 16.9 5.5 1.9 8.2 0.1 5.0 3 2 3 6 6 6 1 Arabidopsis broad-spectrum mildew resistance protein RPW8 Seryl_tRNA_N PF02403.22 gi|257387689|ref|YP_003177462.1| - 0.0038 17.4 22.4 3.1 8.1 0.6 5.8 2 1 3 6 6 6 2 Seryl-tRNA synthetase N-terminal domain DUF677 PF05055.12 gi|257387689|ref|YP_003177462.1| - 0.0051 15.7 5.7 0.0051 15.7 5.7 3.5 3 1 0 3 3 3 1 Protein of unknown function (DUF677) TPR_MLP1_2 PF07926.12 gi|257387689|ref|YP_003177462.1| - 0.012 15.7 28.7 0.36 10.9 0.6 4.5 3 2 1 4 4 4 0 TPR/MLP1/MLP2-like protein AIP3 PF03915.13 gi|257387689|ref|YP_003177462.1| - 0.016 14.3 18.4 0.16 11.0 6.7 2.9 1 1 2 3 3 3 0 Actin interacting protein 3 PhaP_Bmeg PF09602.10 gi|257387689|ref|YP_003177462.1| - 0.022 14.7 5.8 0.51 10.2 0.7 3.3 3 1 1 4 4 4 0 Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg) APG17 PF04108.12 gi|257387689|ref|YP_003177462.1| - 0.033 13.3 25.0 0.025 13.7 11.8 3.3 1 1 2 3 3 3 0 Autophagy protein Apg17 DUF4795 PF16043.5 gi|257387689|ref|YP_003177462.1| - 0.036 13.7 16.5 0.4 10.2 6.2 3.2 1 1 1 2 2 2 0 Domain of unknown function (DUF4795) Alanine_zipper PF11839.8 gi|257387689|ref|YP_003177462.1| - 0.036 14.4 63.3 0.045 14.1 11.9 6.2 5 2 1 6 6 6 0 Alanine-zipper, major outer membrane lipoprotein Spc7 PF08317.11 gi|257387689|ref|YP_003177462.1| - 0.039 12.9 28.4 0.16 10.8 1.0 4.0 1 1 3 4 4 4 0 Spc7 kinetochore protein Spectrin PF00435.21 gi|257387689|ref|YP_003177462.1| - 0.048 14.1 16.9 0.46 11.0 1.0 4.4 2 2 0 3 3 3 0 Spectrin repeat DUF3450 PF11932.8 gi|257387689|ref|YP_003177462.1| - 0.082 12.2 34.7 0.33 10.2 5.0 4.9 1 1 2 4 4 4 0 Protein of unknown function (DUF3450) Tektin PF03148.14 gi|257387689|ref|YP_003177462.1| - 0.083 11.6 21.1 0.14 10.9 4.2 4.1 2 1 0 3 3 3 0 Tektin family Baculo_PEP_C PF04513.12 gi|257387689|ref|YP_003177462.1| - 0.092 12.8 26.0 0.053 13.6 1.0 5.0 3 1 1 5 5 5 0 Baculovirus polyhedron envelope protein, PEP, C terminus ZapB PF06005.12 gi|257387689|ref|YP_003177462.1| - 0.11 12.9 14.2 3 8.3 0.0 5.1 6 1 0 6 6 4 0 Cell division protein ZapB EzrA PF06160.12 gi|257387689|ref|YP_003177462.1| - 0.12 10.6 20.6 0.021 13.0 1.8 3.7 2 1 0 3 3 3 0 Septation ring formation regulator, EzrA DUF2203 PF09969.9 gi|257387689|ref|YP_003177462.1| - 0.13 13.0 26.3 2.2 9.0 0.7 5.0 3 2 2 5 5 5 0 Uncharacterized conserved protein (DUF2203) Syntaxin-6_N PF09177.11 gi|257387689|ref|YP_003177462.1| - 0.14 12.8 26.5 0.55 10.8 0.7 5.5 2 2 4 6 6 6 0 Syntaxin 6, N-terminal LtuB PF17455.2 gi|257387689|ref|YP_003177462.1| - 0.18 12.4 0.5 0.91 10.2 0.1 2.3 3 0 0 3 3 2 0 Late transcription unit B COG2 PF06148.11 gi|257387689|ref|YP_003177462.1| - 0.22 11.6 22.8 2.7 8.1 0.6 6.3 3 2 2 6 6 6 0 COG (conserved oligomeric Golgi) complex component, COG2 UPF0242 PF06785.11 gi|257387689|ref|YP_003177462.1| - 0.26 11.4 6.0 2.3 8.3 0.7 3.2 2 2 0 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus CENP-F_leu_zip PF10473.9 gi|257387689|ref|YP_003177462.1| - 0.5 10.4 23.1 1.1 9.3 5.4 4.8 2 2 3 5 5 5 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 ISG65-75 PF11727.8 gi|257387689|ref|YP_003177462.1| - 0.57 9.4 38.3 1.4 8.1 3.6 4.1 2 1 2 4 4 4 0 Invariant surface glycoprotein DUF4559 PF15112.6 gi|257387689|ref|YP_003177462.1| - 0.85 9.2 5.7 1.3 8.6 0.2 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4559) PMC2NT PF08066.12 gi|257387689|ref|YP_003177462.1| - 0.98 10.1 18.4 5 7.9 0.8 4.8 3 2 2 5 5 4 0 PMC2NT (NUC016) domain FlaC_arch PF05377.11 gi|257387689|ref|YP_003177462.1| - 1.3 9.5 17.7 34 4.9 0.0 6.7 5 2 2 7 7 7 0 Flagella accessory protein C (FlaC) IMD PF08397.11 gi|257387689|ref|YP_003177462.1| - 1.6 8.1 5.2 0.53 9.6 0.1 2.7 3 1 0 4 4 4 0 IRSp53/MIM homology domain YlbD_coat PF14071.6 gi|257387689|ref|YP_003177462.1| - 1.8 8.9 5.0 3.8 7.8 0.0 3.4 2 2 1 3 3 3 0 Putative coat protein DUF5082 PF16888.5 gi|257387689|ref|YP_003177462.1| - 2 8.7 17.5 2.6 8.3 0.3 4.7 3 1 1 4 4 4 0 Domain of unknown function (DUF5082) Corona_S2 PF01601.16 gi|257387689|ref|YP_003177462.1| - 2.2 6.7 5.7 0.26 9.7 0.8 1.8 2 0 0 2 2 2 0 Coronavirus S2 glycoprotein YkyA PF10368.9 gi|257387689|ref|YP_003177462.1| - 2.3 7.8 26.9 1.2 8.7 4.3 4.2 2 1 0 3 3 3 0 Putative cell-wall binding lipoprotein DASH_Dam1 PF08653.10 gi|257387689|ref|YP_003177462.1| - 2.5 8.0 8.2 25 4.8 0.0 5.2 6 0 0 6 6 6 0 DASH complex subunit Dam1 CHDCT2 PF08074.11 gi|257387689|ref|YP_003177462.1| - 2.8 8.1 11.7 12 6.0 0.1 4.0 3 2 1 4 4 4 0 CHDCT2 (NUC038) domain WXG100 PF06013.12 gi|257387689|ref|YP_003177462.1| - 2.8 8.2 34.7 5.2 7.4 1.1 8.6 3 2 6 9 9 8 0 Proteins of 100 residues with WXG DUF4200 PF13863.6 gi|257387689|ref|YP_003177462.1| - 3.2 8.2 18.7 53 4.3 8.4 4.3 2 2 0 3 3 3 0 Domain of unknown function (DUF4200) Laminin_I PF06008.14 gi|257387689|ref|YP_003177462.1| - 3.6 7.2 33.9 1.7 8.3 5.5 4.7 2 2 3 5 5 5 0 Laminin Domain I Tho2 PF11262.8 gi|257387689|ref|YP_003177462.1| - 3.6 6.7 4.3 3.2 6.9 0.4 2.6 3 0 0 3 3 3 0 Transcription factor/nuclear export subunit protein 2 Mod_r PF07200.13 gi|257387689|ref|YP_003177462.1| - 3.8 7.6 12.5 14 5.8 1.1 4.1 1 1 4 5 5 5 0 Modifier of rudimentary (Mod(r)) protein T3SSipB PF16535.5 gi|257387689|ref|YP_003177462.1| - 3.9 7.9 44.2 3.5 8.1 9.2 4.8 1 1 3 5 5 5 0 Type III cell invasion protein SipB Amino_oxidase PF01593.24 gi|257387690|ref|YP_003177463.1| - 3.5e-36 125.5 0.2 5.2e-36 124.9 0.2 1.2 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|257387690|ref|YP_003177463.1| - 3.6e-13 49.6 0.3 1.1e-12 48.0 0.2 2.0 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|257387690|ref|YP_003177463.1| - 6.7e-09 35.8 6.5 2.8e-08 33.7 6.5 1.8 1 1 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|257387690|ref|YP_003177463.1| - 2.3e-06 27.0 5.3 5.6e-06 25.7 3.3 2.0 2 0 0 2 2 2 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|257387690|ref|YP_003177463.1| - 2.7e-05 23.6 1.6 4.4e-05 22.8 0.2 1.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|257387690|ref|YP_003177463.1| - 5.3e-05 22.7 1.9 5.9e-05 22.6 0.2 1.8 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|257387690|ref|YP_003177463.1| - 0.00012 22.6 0.5 0.00043 20.8 0.2 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|257387690|ref|YP_003177463.1| - 0.00033 19.8 0.3 0.00059 19.0 0.3 1.4 1 0 0 1 1 1 1 Glucose inhibited division protein A HI0933_like PF03486.14 gi|257387690|ref|YP_003177463.1| - 0.00083 18.2 0.8 0.00083 18.2 0.8 1.5 2 0 0 2 2 2 1 HI0933-like protein NAD_binding_9 PF13454.6 gi|257387690|ref|YP_003177463.1| - 0.0043 17.1 1.6 0.038 14.0 0.2 2.2 2 0 0 2 2 2 1 FAD-NAD(P)-binding AlaDh_PNT_C PF01262.21 gi|257387690|ref|YP_003177463.1| - 0.012 14.9 2.7 0.11 11.7 0.1 2.2 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Thi4 PF01946.17 gi|257387690|ref|YP_003177463.1| - 0.015 14.6 1.0 0.094 11.9 0.6 2.2 2 0 0 2 2 2 0 Thi4 family 3HCDH_N PF02737.18 gi|257387690|ref|YP_003177463.1| - 0.02 14.8 0.1 0.035 14.0 0.1 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FMO-like PF00743.19 gi|257387690|ref|YP_003177463.1| - 0.051 12.0 0.0 0.081 11.3 0.0 1.3 1 0 0 1 1 1 0 Flavin-binding monooxygenase-like MCRA PF06100.11 gi|257387690|ref|YP_003177463.1| - 0.058 12.2 0.1 0.11 11.3 0.1 1.4 1 0 0 1 1 1 0 MCRA family Pyr_redox_3 PF13738.6 gi|257387690|ref|YP_003177463.1| - 0.064 12.5 0.7 0.17 11.1 0.2 1.8 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 gi|257387690|ref|YP_003177463.1| - 0.11 11.3 0.1 0.17 10.7 0.1 1.3 1 0 0 1 1 1 0 Tryptophan halogenase Lycopene_cycl PF05834.12 gi|257387690|ref|YP_003177463.1| - 0.16 11.0 0.0 0.25 10.3 0.0 1.2 1 0 0 1 1 1 0 Lycopene cyclase protein FAD_binding_3 PF01494.19 gi|257387690|ref|YP_003177463.1| - 0.18 11.0 0.9 0.32 10.2 0.9 1.4 1 0 0 1 1 1 0 FAD binding domain ApbA PF02558.16 gi|257387690|ref|YP_003177463.1| - 0.35 10.5 1.0 0.64 9.6 1.0 1.4 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA HisKA_7TM PF16927.5 gi|257387691|ref|YP_003177464.1| - 3.2e-44 151.6 17.3 4.4e-44 151.1 17.3 1.2 1 0 0 1 1 1 1 N-terminal 7TM region of histidine kinase HATPase_c PF02518.26 gi|257387691|ref|YP_003177464.1| - 1.9e-13 50.9 0.0 4.8e-13 49.6 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|257387691|ref|YP_003177464.1| - 5.2e-06 26.4 0.2 2.3e-05 24.3 0.1 2.1 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain PAS_8 PF13188.7 gi|257387691|ref|YP_003177464.1| - 0.0001 22.2 0.0 0.00037 20.4 0.0 1.9 1 0 0 1 1 1 1 PAS domain PAS PF00989.25 gi|257387691|ref|YP_003177464.1| - 0.00012 22.0 0.0 0.0006 19.8 0.0 2.2 2 0 0 2 2 2 1 PAS fold HisKA_4TM PF16926.5 gi|257387691|ref|YP_003177464.1| - 0.00044 19.9 0.2 0.00044 19.9 0.2 1.9 2 0 0 2 2 2 1 Archaeal 4TM region of histidine kinase PAS_4 PF08448.10 gi|257387691|ref|YP_003177464.1| - 0.00066 19.9 3.3 0.0037 17.5 0.8 2.8 2 1 0 2 2 2 1 PAS fold GAF_3 PF13492.6 gi|257387691|ref|YP_003177464.1| - 0.00074 19.9 0.1 0.0033 17.8 0.0 2.2 2 0 0 2 2 2 1 GAF domain GAF_2 PF13185.6 gi|257387691|ref|YP_003177464.1| - 0.0014 18.9 0.2 0.005 17.1 0.2 2.0 1 0 0 1 1 1 1 GAF domain PAS_9 PF13426.7 gi|257387691|ref|YP_003177464.1| - 0.0076 16.5 0.0 0.6 10.4 0.0 3.3 2 1 0 2 2 2 1 PAS domain HATPase_c_3 PF13589.6 gi|257387691|ref|YP_003177464.1| - 0.021 14.7 0.0 0.051 13.4 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Gp_dh_C PF02800.20 gi|257387691|ref|YP_003177464.1| - 0.051 13.2 0.1 0.22 11.1 0.1 2.1 2 0 0 2 2 2 0 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HATPase_c_5 PF14501.6 gi|257387691|ref|YP_003177464.1| - 0.18 11.8 0.0 0.33 10.9 0.0 1.4 1 0 0 1 1 1 0 GHKL domain NPV_P10 PF05531.12 gi|257387691|ref|YP_003177464.1| - 3 8.4 6.3 1.7 9.1 0.1 3.1 2 1 1 3 3 3 0 Nucleopolyhedrovirus P10 protein DUF4231 PF14015.6 gi|257387691|ref|YP_003177464.1| - 3.6 8.1 8.6 1.9 9.0 0.4 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF4231) GHMP_kinases_N PF00288.26 gi|257387692|ref|YP_003177465.1| - 5.7e-12 45.7 2.7 5.7e-12 45.7 2.7 2.0 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|257387692|ref|YP_003177465.1| - 1.5e-08 34.9 0.1 4e-08 33.5 0.1 1.8 1 0 0 1 1 1 1 GHMP kinases C terminal Peptidase_M48_N PF16491.5 gi|257387693|ref|YP_003177466.1| - 0.17 11.7 0.4 0.21 11.5 0.4 1.1 1 0 0 1 1 1 0 CAAX prenyl protease N-terminal, five membrane helices MS_channel PF00924.18 gi|257387695|ref|YP_003177468.1| - 3.3e-46 157.4 1.6 4e-46 157.2 0.0 1.9 2 1 0 2 2 2 1 Mechanosensitive ion channel DUF4690 PF15756.5 gi|257387695|ref|YP_003177468.1| - 0.044 14.4 0.3 0.044 14.4 0.3 2.1 2 0 0 2 2 2 0 Small Novel Rich in Cartilage Cucumopine_C PF18631.1 gi|257387695|ref|YP_003177468.1| - 0.076 13.0 0.1 0.12 12.3 0.1 1.2 1 0 0 1 1 1 0 Cucumopine synthase C-terminal helical bundle domain PKD_channel PF08016.12 gi|257387695|ref|YP_003177468.1| - 0.76 8.4 4.0 1.1 7.9 4.0 1.1 1 0 0 1 1 1 0 Polycystin cation channel Amastin PF07344.11 gi|257387695|ref|YP_003177468.1| - 2.4 8.0 8.8 0.74 9.7 3.8 2.1 2 0 0 2 2 2 0 Amastin surface glycoprotein DUF393 PF04134.12 gi|257387696|ref|YP_003177469.1| - 1.4e-32 113.4 0.0 1.7e-32 113.1 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function, DUF393 SOR_SNZ PF01680.17 gi|257387697|ref|YP_003177470.1| - 1.1e-97 325.9 5.1 1.4e-97 325.5 5.1 1.1 1 0 0 1 1 1 1 SOR/SNZ family ThiG PF05690.14 gi|257387697|ref|YP_003177470.1| - 1.4e-11 44.2 4.7 1.7e-06 27.6 0.8 2.2 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG Dus PF01207.17 gi|257387697|ref|YP_003177470.1| - 0.00085 18.5 0.4 0.091 11.8 0.0 2.3 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) OMPdecase PF00215.24 gi|257387697|ref|YP_003177470.1| - 0.0017 18.0 0.1 0.011 15.4 0.1 2.0 1 1 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family IGPS PF00218.21 gi|257387697|ref|YP_003177470.1| - 0.014 14.6 0.1 0.14 11.3 0.0 2.3 2 1 0 2 2 2 0 Indole-3-glycerol phosphate synthase NMO PF03060.15 gi|257387697|ref|YP_003177470.1| - 0.018 14.4 1.6 0.12 11.8 0.1 2.1 2 0 0 2 2 2 0 Nitronate monooxygenase NanE PF04131.14 gi|257387697|ref|YP_003177470.1| - 0.037 13.2 0.2 0.27 10.4 0.0 2.2 2 0 0 2 2 2 0 Putative N-acetylmannosamine-6-phosphate epimerase TMP-TENI PF02581.17 gi|257387697|ref|YP_003177470.1| - 0.046 13.0 0.2 0.22 10.9 0.0 2.0 2 0 0 2 2 2 0 Thiamine monophosphate synthase ThiS PF02597.20 gi|257387698|ref|YP_003177471.1| - 3.7e-13 49.9 0.1 7.3e-13 49.0 0.1 1.5 1 1 0 1 1 1 1 ThiS family KHA PF11834.8 gi|257387698|ref|YP_003177471.1| - 0.16 12.1 0.4 0.27 11.4 0.0 1.5 2 0 0 2 2 2 0 KHA, dimerisation domain of potassium ion channel Acetyltransf_1 PF00583.25 gi|257387699|ref|YP_003177472.1| - 1.5e-11 44.5 0.0 3.6e-11 43.3 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|257387699|ref|YP_003177472.1| - 6.7e-05 23.2 0.0 0.00015 22.1 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|257387699|ref|YP_003177472.1| - 8e-05 22.8 3.3 8e-05 22.8 3.3 2.9 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|257387699|ref|YP_003177472.1| - 0.00021 21.2 0.0 0.0004 20.3 0.0 1.5 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_10 PF13673.7 gi|257387699|ref|YP_003177472.1| - 0.0027 17.6 0.0 0.0045 16.9 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|257387699|ref|YP_003177472.1| - 0.005 16.9 0.2 0.082 13.0 0.2 2.5 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|257387699|ref|YP_003177472.1| - 0.0085 16.8 1.2 0.049 14.3 0.1 2.3 2 1 1 3 3 3 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|257387699|ref|YP_003177472.1| - 0.0097 16.0 0.8 0.022 14.9 0.0 1.9 2 0 0 2 2 2 1 GCN5-related N-acetyl-transferase Asparaginase PF00710.20 gi|257387700|ref|YP_003177473.1| - 4.6e-60 202.4 1.6 1.3e-59 201.0 2.0 1.5 2 0 0 2 2 2 1 Asparaginase, N-terminal Asparaginase_C PF17763.1 gi|257387700|ref|YP_003177473.1| - 4.3e-25 88.1 2.0 1.1e-24 86.8 0.1 2.4 3 0 0 3 3 3 1 Glutaminase/Asparaginase C-terminal domain GatD_N PF18195.1 gi|257387700|ref|YP_003177473.1| - 4.9e-16 57.8 0.0 8.8e-16 57.0 0.0 1.5 1 0 0 1 1 1 1 GatD N-terminal domain Gly_reductase PF09338.11 gi|257387700|ref|YP_003177473.1| - 0.053 11.9 0.2 0.088 11.2 0.2 1.2 1 0 0 1 1 1 0 Glycine/sarcosine/betaine reductase component B subunits NurA PF09376.10 gi|257387702|ref|YP_003177475.1| - 1.9e-17 63.8 0.0 2.5e-17 63.4 0.0 1.1 1 0 0 1 1 1 1 NurA domain Peptidase_S9 PF00326.21 gi|257387703|ref|YP_003177476.1| - 7.9e-55 185.6 0.2 1.1e-54 185.1 0.2 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase family PD40 PF07676.12 gi|257387703|ref|YP_003177476.1| - 1.9e-15 56.3 6.5 6.6e-06 25.9 0.0 6.4 6 0 0 6 6 6 4 WD40-like Beta Propeller Repeat DLH PF01738.18 gi|257387703|ref|YP_003177476.1| - 1.4e-09 37.8 0.0 2.4e-09 37.1 0.0 1.3 1 0 0 1 1 1 1 Dienelactone hydrolase family Abhydrolase_1 PF00561.20 gi|257387703|ref|YP_003177476.1| - 3.7e-08 33.3 1.8 0.00022 21.0 0.3 3.3 3 1 1 4 4 4 2 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|257387703|ref|YP_003177476.1| - 2.3e-05 23.8 0.2 0.15 11.3 0.0 2.4 2 0 0 2 2 2 2 Serine aminopeptidase, S33 DPPIV_N PF00930.21 gi|257387703|ref|YP_003177476.1| - 3.5e-05 22.7 0.0 0.036 12.8 0.0 3.7 3 1 0 3 3 3 1 Dipeptidyl peptidase IV (DPP IV) N-terminal region Abhydrolase_3 PF07859.13 gi|257387703|ref|YP_003177476.1| - 0.00056 19.8 0.2 1.1 9.1 0.0 2.4 1 1 1 2 2 2 2 alpha/beta hydrolase fold BAAT_C PF08840.11 gi|257387703|ref|YP_003177476.1| - 0.0018 18.3 0.0 1.4 8.8 0.0 2.3 2 0 0 2 2 2 2 BAAT / Acyl-CoA thioester hydrolase C terminal AXE1 PF05448.12 gi|257387703|ref|YP_003177476.1| - 0.0027 16.4 0.6 0.38 9.4 0.6 2.2 1 1 0 1 1 1 1 Acetyl xylan esterase (AXE1) Abhydrolase_4 PF08386.10 gi|257387703|ref|YP_003177476.1| - 0.0063 16.6 0.0 0.019 15.0 0.0 1.8 2 0 0 2 2 1 1 TAP-like protein Esterase PF00756.20 gi|257387703|ref|YP_003177476.1| - 0.0079 15.9 1.3 0.026 14.2 0.2 2.4 3 0 0 3 3 3 1 Putative esterase DUF2920 PF11144.8 gi|257387703|ref|YP_003177476.1| - 0.026 13.7 0.0 0.7 9.0 0.0 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF2920) Peptidase_S9_N PF02897.15 gi|257387703|ref|YP_003177476.1| - 0.087 11.6 0.0 0.81 8.4 0.0 2.3 2 0 0 2 2 2 0 Prolyl oligopeptidase, N-terminal beta-propeller domain Abhydrolase_2 PF02230.16 gi|257387703|ref|YP_003177476.1| - 0.14 11.9 0.0 0.35 10.7 0.0 1.6 2 0 0 2 2 2 0 Phospholipase/Carboxylesterase Glyco_tranf_2_3 PF13641.6 gi|257387705|ref|YP_003177478.1| - 9.7e-31 107.4 0.3 1.4e-30 106.9 0.3 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.6 gi|257387705|ref|YP_003177478.1| - 9.5e-22 77.9 10.2 9.5e-22 77.9 10.2 3.8 4 1 0 4 4 4 1 Glycosyl transferase family group 2 Glycos_transf_2 PF00535.26 gi|257387705|ref|YP_003177478.1| - 1e-15 57.9 0.0 1.7e-15 57.2 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_transf_21 PF13506.6 gi|257387705|ref|YP_003177478.1| - 9.6e-06 25.2 0.1 1.5e-05 24.5 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 21 Glyco_tranf_2_2 PF10111.9 gi|257387705|ref|YP_003177478.1| - 0.041 13.4 0.0 0.063 12.7 0.0 1.2 1 0 0 1 1 1 0 Glycosyltransferase like family 2 DUF87 PF01935.17 gi|257387706|ref|YP_003177479.1| - 4.5e-10 40.0 0.0 8.4e-10 39.1 0.0 1.4 1 0 0 1 1 1 1 Helicase HerA, central domain DUF853 PF05872.12 gi|257387706|ref|YP_003177479.1| - 1.4e-06 27.2 0.1 0.0016 17.2 0.0 2.2 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) HAS-barrel PF09378.10 gi|257387706|ref|YP_003177479.1| - 0.0055 16.8 0.0 0.026 14.7 0.0 2.0 2 0 0 2 2 2 1 HAS barrel domain FtsK_SpoIIIE PF01580.18 gi|257387706|ref|YP_003177479.1| - 0.05 13.0 0.0 0.21 10.9 0.0 1.9 2 0 0 2 2 2 0 FtsK/SpoIIIE family TrwB_AAD_bind PF10412.9 gi|257387706|ref|YP_003177479.1| - 0.053 12.4 0.0 0.083 11.8 0.0 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_10 PF12846.7 gi|257387706|ref|YP_003177479.1| - 0.06 12.3 0.0 2.3 7.0 0.0 2.2 2 0 0 2 2 2 0 AAA-like domain AAA_16 PF13191.6 gi|257387706|ref|YP_003177479.1| - 0.08 13.3 0.0 0.18 12.2 0.0 1.8 1 1 0 1 1 1 0 AAA ATPase domain ResIII PF04851.15 gi|257387706|ref|YP_003177479.1| - 0.11 12.5 0.0 9.8 6.1 0.0 2.2 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit AAA_22 PF13401.6 gi|257387706|ref|YP_003177479.1| - 0.12 12.7 0.0 0.55 10.5 0.0 2.0 2 0 0 2 2 2 0 AAA domain T2SSE PF00437.20 gi|257387706|ref|YP_003177479.1| - 0.15 11.1 0.0 0.52 9.3 0.0 1.8 2 0 0 2 2 2 0 Type II/IV secretion system protein Usp PF00582.26 gi|257387707|ref|YP_003177480.1| - 1.6e-35 122.7 0.2 1.8e-35 122.5 0.2 1.0 1 0 0 1 1 1 1 Universal stress protein family GIDE PF12483.8 gi|257387707|ref|YP_003177480.1| - 0.13 11.7 0.0 0.15 11.5 0.0 1.1 1 0 0 1 1 1 0 E3 Ubiquitin ligase TPR_6 PF13174.6 gi|257387707|ref|YP_003177480.1| - 0.16 12.7 0.3 14 6.5 0.0 2.4 2 0 0 2 2 2 0 Tetratricopeptide repeat Usp PF00582.26 gi|257387708|ref|YP_003177481.1| - 3.9e-10 40.4 0.5 4.3e-10 40.3 0.5 1.1 1 0 0 1 1 1 1 Universal stress protein family Reductase_C PF14759.6 gi|257387708|ref|YP_003177481.1| - 0.041 14.4 0.0 0.087 13.4 0.0 1.5 1 0 0 1 1 1 0 Reductase C-terminal ATPase PF06745.13 gi|257387709|ref|YP_003177482.1| - 6.2e-57 192.6 0.3 7.3e-57 192.4 0.3 1.0 1 0 0 1 1 1 1 KaiC DnaB_C PF03796.15 gi|257387709|ref|YP_003177482.1| - 5.5e-07 29.2 0.3 0.00077 18.9 0.0 2.3 2 1 1 3 3 3 2 DnaB-like helicase C terminal domain AAA_25 PF13481.6 gi|257387709|ref|YP_003177482.1| - 9.5e-07 28.6 0.0 1.6e-06 27.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_24 PF13479.6 gi|257387709|ref|YP_003177482.1| - 1.1e-05 25.3 0.1 2.6e-05 24.0 0.0 1.7 2 1 0 2 2 2 1 AAA domain MEDS PF14417.6 gi|257387709|ref|YP_003177482.1| - 0.00032 20.5 0.0 0.00061 19.7 0.0 1.4 1 0 0 1 1 1 1 MEDS: MEthanogen/methylotroph, DcmR Sensory domain GvpD PF07088.11 gi|257387709|ref|YP_003177482.1| - 0.00055 18.7 0.3 0.0014 17.4 0.3 1.6 1 1 0 1 1 1 1 GvpD gas vesicle protein RecA PF00154.21 gi|257387709|ref|YP_003177482.1| - 0.00056 19.5 0.0 0.0015 18.0 0.0 1.7 2 0 0 2 2 2 1 recA bacterial DNA recombination protein Rad51 PF08423.11 gi|257387709|ref|YP_003177482.1| - 0.0067 15.7 0.0 0.0092 15.3 0.0 1.3 1 0 0 1 1 1 1 Rad51 T2SSE PF00437.20 gi|257387709|ref|YP_003177482.1| - 0.013 14.6 0.0 0.019 14.1 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_33 PF13671.6 gi|257387709|ref|YP_003177482.1| - 0.02 15.0 0.1 0.042 14.0 0.1 1.7 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|257387709|ref|YP_003177482.1| - 0.021 14.9 0.0 0.043 13.9 0.0 1.6 1 1 0 1 1 1 0 AAA domain PhoH PF02562.16 gi|257387709|ref|YP_003177482.1| - 0.065 12.7 0.0 0.1 12.0 0.0 1.2 1 0 0 1 1 1 0 PhoH-like protein IstB_IS21 PF01695.17 gi|257387709|ref|YP_003177482.1| - 0.13 12.0 0.1 0.26 11.0 0.1 1.6 1 1 0 1 1 1 0 IstB-like ATP binding protein TrwB_AAD_bind PF10412.9 gi|257387709|ref|YP_003177482.1| - 0.14 11.0 0.2 0.22 10.4 0.2 1.2 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain NAD_kinase PF01513.21 gi|257387710|ref|YP_003177483.1| - 1.2e-40 139.6 0.3 1.6e-40 139.2 0.3 1.1 1 0 0 1 1 1 1 ATP-NAD kinase Response_reg PF00072.24 gi|257387712|ref|YP_003177485.1| - 4.1e-19 68.8 1.0 4.1e-19 68.8 1.0 1.9 2 0 0 2 2 2 1 Response regulator receiver domain HalX PF08663.10 gi|257387712|ref|YP_003177485.1| - 4.8e-17 62.0 9.3 4.8e-17 62.0 9.3 1.8 2 0 0 2 2 2 1 HalX domain DUF349 PF03993.12 gi|257387712|ref|YP_003177485.1| - 0.02 15.2 0.7 0.073 13.4 0.6 2.0 1 1 0 1 1 1 0 Domain of Unknown Function (DUF349) IF-2B PF01008.17 gi|257387712|ref|YP_003177485.1| - 0.026 13.7 0.4 0.065 12.4 0.0 1.8 2 0 0 2 2 2 0 Initiation factor 2 subunit family Halo_GVPC PF05465.13 gi|257387712|ref|YP_003177485.1| - 0.029 14.6 1.1 0.029 14.6 1.1 3.8 4 0 0 4 4 4 0 Halobacterial gas vesicle protein C (GVPC) repeat PAS_4 PF08448.10 gi|257387713|ref|YP_003177486.1| - 0.002 18.3 0.2 0.0034 17.6 0.2 1.4 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 gi|257387713|ref|YP_003177486.1| - 0.0059 16.6 0.1 0.012 15.6 0.1 1.6 1 0 0 1 1 1 1 PAS domain TetR_C_6 PF13977.6 gi|257387714|ref|YP_003177487.1| - 3.2e-11 43.5 0.3 6.8e-11 42.4 0.3 1.6 1 0 0 1 1 1 1 BetI-type transcriptional repressor, C-terminal TetR_N PF00440.23 gi|257387714|ref|YP_003177487.1| - 9.1e-11 41.4 0.1 1.7e-10 40.5 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_27 PF17935.1 gi|257387714|ref|YP_003177487.1| - 2.7e-06 27.4 0.2 2.4e-05 24.3 0.1 2.4 2 1 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_24 PF17932.1 gi|257387714|ref|YP_003177487.1| - 7.1e-06 26.3 0.0 2.1e-05 24.7 0.0 1.8 2 0 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_29 PF17938.1 gi|257387714|ref|YP_003177487.1| - 2.8e-05 24.2 0.1 8.3e-05 22.7 0.0 1.8 2 0 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_31 PF17940.1 gi|257387714|ref|YP_003177487.1| - 0.00014 22.0 0.2 0.00048 20.3 0.1 1.8 2 0 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_37 PF18665.1 gi|257387714|ref|YP_003177487.1| - 0.00079 20.0 0.0 0.002 18.7 0.0 1.6 2 0 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain TetR_C_25 PF17933.1 gi|257387714|ref|YP_003177487.1| - 0.0031 17.8 0.1 0.16 12.3 0.0 2.3 2 0 0 2 2 2 1 Tetracyclin repressor-like, C-terminal domain FCD PF07729.12 gi|257387714|ref|YP_003177487.1| - 0.025 15.0 0.0 0.052 14.0 0.0 1.6 1 0 0 1 1 1 0 FCD domain HTH_7 PF02796.15 gi|257387714|ref|YP_003177487.1| - 0.035 14.2 0.0 0.1 12.7 0.0 1.7 2 0 0 2 2 1 0 Helix-turn-helix domain of resolvase TetR_C_5 PF08360.11 gi|257387714|ref|YP_003177487.1| - 0.06 13.5 0.0 0.12 12.5 0.0 1.5 1 0 0 1 1 1 0 QacR-like protein, C-terminal region HTH_40 PF14493.6 gi|257387714|ref|YP_003177487.1| - 0.062 13.8 0.0 0.25 11.8 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|257387714|ref|YP_003177487.1| - 0.063 13.1 0.0 0.15 11.9 0.0 1.6 1 0 0 1 1 1 0 Homeodomain-like domain TetR_C_7 PF14246.6 gi|257387714|ref|YP_003177487.1| - 0.077 13.0 0.0 0.17 11.9 0.0 1.6 1 0 0 1 1 1 0 AefR-like transcriptional repressor, C-terminal domain HTH_20 PF12840.7 gi|257387714|ref|YP_003177487.1| - 0.082 13.0 0.0 1.1 9.4 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain UPF0122 PF04297.14 gi|257387714|ref|YP_003177487.1| - 0.085 13.1 0.1 0.19 12.0 0.1 1.5 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like TetR_C_4 PF08359.11 gi|257387714|ref|YP_003177487.1| - 0.094 12.9 0.0 0.14 12.3 0.0 1.2 1 0 0 1 1 1 0 YsiA-like protein, C-terminal region NPCBM_assoc PF10633.9 gi|257387715|ref|YP_003177488.1| - 1.8e-18 66.6 15.8 0.0024 18.1 0.0 8.0 5 4 0 5 5 5 5 NPCBM-associated, NEW3 domain of alpha-galactosidase CARDB PF07705.11 gi|257387715|ref|YP_003177488.1| - 5.3e-15 55.5 19.0 0.042 14.1 0.2 5.7 5 1 0 5 5 5 5 CARDB DUF11 PF01345.18 gi|257387715|ref|YP_003177488.1| - 6.9e-15 55.1 26.4 1.7e-05 25.0 0.5 7.5 4 4 3 7 7 7 3 Domain of unknown function DUF11 DUF4832 PF16116.5 gi|257387715|ref|YP_003177488.1| - 7.3e-06 26.0 0.3 3.3 7.5 0.0 4.3 4 0 0 4 4 4 2 Domain of unknown function (DUF4832) Transglut_C PF00927.22 gi|257387715|ref|YP_003177488.1| - 9.2e-05 22.5 0.0 11 6.2 0.0 5.1 5 2 0 5 5 5 1 Transglutaminase family, C-terminal ig like domain ASH PF15780.5 gi|257387715|ref|YP_003177488.1| - 0.00024 21.3 7.4 1.8 8.8 0.2 5.8 6 0 0 6 6 5 1 Abnormal spindle-like microcephaly-assoc'd, ASPM-SPD-2-Hydin TRAP_alpha PF03896.16 gi|257387715|ref|YP_003177488.1| - 0.00032 20.0 0.1 0.47 9.6 0.0 3.4 2 1 0 3 3 3 1 Translocon-associated protein (TRAP), alpha subunit DUF4625 PF15418.6 gi|257387715|ref|YP_003177488.1| - 0.0014 18.9 0.5 1 9.6 0.0 3.8 3 1 0 3 3 3 1 Domain of unknown function (DUF4625) Ig_GlcNase PF18368.1 gi|257387715|ref|YP_003177488.1| - 0.0016 18.6 4.4 1.2 9.3 0.2 5.1 5 1 0 5 5 5 1 Exo-beta-D-glucosaminidase Ig-fold domain Arrestin_C PF02752.22 gi|257387715|ref|YP_003177488.1| - 0.0095 16.4 0.0 1.1 9.7 0.0 3.0 2 0 0 2 2 2 1 Arrestin (or S-antigen), C-terminal domain MBG PF17883.1 gi|257387715|ref|YP_003177488.1| - 0.026 15.1 10.7 0.026 15.1 0.4 4.7 2 1 3 5 5 5 0 MBG domain DUF5016 PF16408.5 gi|257387715|ref|YP_003177488.1| - 0.028 14.4 1.8 0.47 10.5 0.1 3.3 3 0 0 3 3 3 0 Domain of unknown function (DUF5016) PHTB1_C PF14728.6 gi|257387715|ref|YP_003177488.1| - 0.029 13.5 0.0 0.22 10.6 0.0 2.1 2 0 0 2 2 2 0 PTHB1 C-terminus I-set PF07679.16 gi|257387715|ref|YP_003177488.1| - 0.047 13.8 5.7 4 7.6 0.0 5.4 5 1 1 6 6 6 0 Immunoglobulin I-set domain DsbC PF11412.8 gi|257387715|ref|YP_003177488.1| - 0.11 12.5 0.0 0.35 10.9 0.0 1.8 1 0 0 1 1 1 0 Disulphide bond corrector protein DsbC FAS_meander PF17951.1 gi|257387715|ref|YP_003177488.1| - 0.2 11.5 0.1 1.2 8.9 0.0 2.3 2 0 0 2 2 2 0 Fatty acid synthase meander beta sheet domain MMPL PF03176.15 gi|257387716|ref|YP_003177489.1| - 7.6e-33 113.8 31.2 4.3e-20 71.9 7.4 2.8 2 1 1 3 3 3 2 MMPL family Patched PF02460.18 gi|257387716|ref|YP_003177489.1| - 7.1e-14 50.9 23.0 1.8e-07 29.7 9.1 2.2 2 0 0 2 2 2 2 Patched family Sterol-sensing PF12349.8 gi|257387716|ref|YP_003177489.1| - 7e-12 45.4 11.7 4.3e-06 26.7 1.8 2.6 2 0 0 2 2 2 2 Sterol-sensing domain of SREBP cleavage-activation SecD_SecF PF02355.16 gi|257387716|ref|YP_003177489.1| - 6.7e-05 22.3 26.6 0.0023 17.3 10.9 2.4 2 0 0 2 2 2 2 Protein export membrane protein ACR_tran PF00873.19 gi|257387716|ref|YP_003177489.1| - 2.6 5.6 19.3 0.07 10.8 7.8 2.5 3 0 0 3 3 3 0 AcrB/AcrD/AcrF family Pyr_redox_2 PF07992.14 gi|257387717|ref|YP_003177490.1| - 9.8e-40 136.6 0.2 1.3e-39 136.2 0.2 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|257387717|ref|YP_003177490.1| - 2.2e-13 50.4 0.0 5.8e-13 49.1 0.0 1.7 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 gi|257387717|ref|YP_003177490.1| - 1.4e-07 32.0 0.1 2e-06 28.3 0.0 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.18 gi|257387717|ref|YP_003177490.1| - 2.4e-05 24.5 0.2 0.0076 16.5 0.0 3.0 3 0 0 3 3 3 1 TrkA-N domain Sacchrp_dh_NADP PF03435.18 gi|257387717|ref|YP_003177490.1| - 0.00081 19.7 0.1 1.7 8.9 0.1 2.5 2 0 0 2 2 2 2 Saccharopine dehydrogenase NADP binding domain Thi4 PF01946.17 gi|257387717|ref|YP_003177490.1| - 0.00094 18.5 1.1 0.025 13.8 0.1 2.8 3 0 0 3 3 3 1 Thi4 family Pyr_redox_3 PF13738.6 gi|257387717|ref|YP_003177490.1| - 0.0048 16.2 0.5 0.12 11.6 0.0 2.5 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|257387717|ref|YP_003177490.1| - 0.0084 16.1 0.1 1.7 8.6 0.0 2.5 1 1 1 2 2 2 2 FAD-NAD(P)-binding GIDA PF01134.22 gi|257387717|ref|YP_003177490.1| - 0.0086 15.2 2.3 1.3 8.0 0.1 2.8 2 1 0 2 2 2 2 Glucose inhibited division protein A NAD_binding_8 PF13450.6 gi|257387717|ref|YP_003177490.1| - 0.055 13.7 0.3 0.39 11.0 0.4 2.3 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain UDPG_MGDP_dh_N PF03721.14 gi|257387717|ref|YP_003177490.1| - 0.13 11.8 0.0 0.28 10.7 0.0 1.5 1 0 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DAO PF01266.24 gi|257387717|ref|YP_003177490.1| - 0.21 11.1 6.9 2.4 7.7 2.6 2.7 2 1 0 3 3 3 0 FAD dependent oxidoreductase HATPase_c PF02518.26 gi|257387718|ref|YP_003177491.1| - 1.2e-17 64.4 0.0 2.4e-17 63.4 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|257387718|ref|YP_003177491.1| - 6.7e-13 48.5 2.6 1.4e-12 47.5 0.3 2.8 2 1 1 3 3 3 1 His Kinase A (phospho-acceptor) domain GAF PF01590.26 gi|257387718|ref|YP_003177491.1| - 7.4e-13 49.3 0.0 2.6e-12 47.5 0.0 1.9 2 0 0 2 2 2 1 GAF domain Response_reg PF00072.24 gi|257387718|ref|YP_003177491.1| - 2e-11 44.1 0.0 3.7e-11 43.2 0.0 1.5 1 0 0 1 1 1 1 Response regulator receiver domain GAF_2 PF13185.6 gi|257387718|ref|YP_003177491.1| - 2.5e-09 37.6 0.9 2.3e-08 34.5 0.1 2.8 2 1 1 3 3 3 1 GAF domain PAS_4 PF08448.10 gi|257387718|ref|YP_003177491.1| - 4.4e-09 36.6 3.1 4.3e-08 33.4 0.9 2.8 2 0 0 2 2 2 1 PAS fold GAF_3 PF13492.6 gi|257387718|ref|YP_003177491.1| - 5.8e-08 33.1 0.0 1e-07 32.4 0.0 1.4 1 0 0 1 1 1 1 GAF domain HATPase_c_2 PF13581.6 gi|257387718|ref|YP_003177491.1| - 0.038 14.0 1.2 0.37 10.7 0.1 2.8 1 1 1 2 2 2 0 Histidine kinase-like ATPase domain PAS_8 PF13188.7 gi|257387718|ref|YP_003177491.1| - 0.051 13.6 0.7 0.3 11.2 0.1 2.6 3 0 0 3 3 3 0 PAS domain PAS PF00989.25 gi|257387718|ref|YP_003177491.1| - 0.068 13.2 0.0 0.25 11.3 0.0 2.0 1 1 0 1 1 1 0 PAS fold HATPase_c_3 PF13589.6 gi|257387718|ref|YP_003177491.1| - 0.14 12.0 0.0 0.32 10.8 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase OrfB_Zn_ribbon PF07282.11 gi|257387719|ref|YP_003177492.1| - 4.6e-21 74.5 1.3 8.9e-21 73.6 1.3 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|257387719|ref|YP_003177492.1| - 1.2e-05 25.5 0.3 3.3e-05 24.1 0.3 1.8 1 0 0 1 1 1 1 Probable transposase DUF2283 PF10049.9 gi|257387719|ref|YP_003177492.1| - 0.029 14.6 0.1 0.057 13.6 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2283) IBR PF01485.21 gi|257387719|ref|YP_003177492.1| - 0.042 14.1 0.7 0.098 12.9 0.7 1.5 1 0 0 1 1 1 0 IBR domain, a half RING-finger domain zinc_ribbon_2 PF13240.6 gi|257387719|ref|YP_003177492.1| - 0.21 11.4 1.2 0.42 10.4 0.7 1.8 1 1 0 1 1 1 0 zinc-ribbon domain Usp PF00582.26 gi|257387720|ref|YP_003177493.1| - 2e-11 44.6 0.1 2.6e-11 44.2 0.1 1.0 1 0 0 1 1 1 1 Universal stress protein family 5-FTHF_cyc-lig PF01812.20 gi|257387721|ref|YP_003177494.1| - 2e-27 96.3 0.0 2.4e-27 96.0 0.0 1.1 1 0 0 1 1 1 1 5-formyltetrahydrofolate cyclo-ligase family Form_Nir_trans PF01226.17 gi|257387722|ref|YP_003177495.1| - 2.9e-42 144.6 18.3 3.8e-42 144.3 18.3 1.1 1 0 0 1 1 1 1 Formate/nitrite transporter Usp PF00582.26 gi|257387722|ref|YP_003177495.1| - 2.6e-07 31.2 5.0 4.2e-05 24.1 0.3 3.4 2 1 0 2 2 2 2 Universal stress protein family Biotin_carb_N PF00289.22 gi|257387722|ref|YP_003177495.1| - 0.039 14.5 0.0 0.091 13.3 0.0 1.6 1 0 0 1 1 1 0 Biotin carboxylase, N-terminal domain DEAD PF00270.29 gi|257387723|ref|YP_003177496.1| - 7.7e-23 81.2 0.0 1.1e-22 80.6 0.0 1.3 1 0 0 1 1 1 1 DEAD/DEAH box helicase DUF1998 PF09369.10 gi|257387723|ref|YP_003177496.1| - 6.1e-20 71.8 0.1 1.9e-19 70.2 0.1 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF1998) Helicase_C PF00271.31 gi|257387723|ref|YP_003177496.1| - 7.1e-09 36.0 0.0 1.5e-07 31.8 0.0 2.2 2 0 0 2 2 2 1 Helicase conserved C-terminal domain HTH_10 PF04967.12 gi|257387724|ref|YP_003177497.1| - 2.6e-19 68.7 0.0 4.7e-19 67.9 0.0 1.4 1 0 0 1 1 1 1 HTH DNA binding domain MarR_2 PF12802.7 gi|257387724|ref|YP_003177497.1| - 0.00047 20.0 0.1 0.035 14.0 0.0 2.6 2 1 0 2 2 2 1 MarR family HTH_24 PF13412.6 gi|257387724|ref|YP_003177497.1| - 0.0042 16.6 0.0 0.0097 15.5 0.0 1.7 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|257387724|ref|YP_003177497.1| - 0.0063 16.3 0.1 0.15 11.9 0.0 2.5 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_Tnp_1_2 PF13022.6 gi|257387724|ref|YP_003177497.1| - 0.0066 16.6 0.0 0.01 16.0 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix of insertion element transposase DNA_photolyase PF00875.18 gi|257387724|ref|YP_003177497.1| - 0.007 16.4 0.0 0.011 15.8 0.0 1.2 1 0 0 1 1 1 1 DNA photolyase UPF0122 PF04297.14 gi|257387724|ref|YP_003177497.1| - 0.02 15.1 0.0 0.033 14.4 0.0 1.4 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like BAT PF15915.5 gi|257387724|ref|YP_003177497.1| - 0.04 13.8 0.1 0.073 13.0 0.1 1.5 1 0 0 1 1 1 0 GAF and HTH_10 associated domain HTH_AsnC-type PF13404.6 gi|257387724|ref|YP_003177497.1| - 0.045 13.6 0.0 0.11 12.3 0.0 1.7 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_35 PF13693.6 gi|257387724|ref|YP_003177497.1| - 0.051 13.6 0.0 0.15 12.1 0.0 1.7 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding PuR_N PF09182.10 gi|257387724|ref|YP_003177497.1| - 0.1 12.5 0.0 0.26 11.3 0.0 1.6 1 0 0 1 1 1 0 Bacterial purine repressor, N-terminal Polyketide_cyc2 PF10604.9 gi|257387725|ref|YP_003177498.1| - 0.00061 20.1 1.1 0.0019 18.5 1.1 1.7 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport DUF2505 PF10698.9 gi|257387725|ref|YP_003177498.1| - 0.0026 17.9 0.2 0.55 10.3 0.0 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF2505) Radical_SAM PF04055.21 gi|257387727|ref|YP_003177500.1| - 8.1e-19 68.6 0.0 1.2e-18 68.0 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|257387727|ref|YP_003177500.1| - 1.6e-05 25.2 0.0 2.5e-05 24.6 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|257387727|ref|YP_003177500.1| - 0.0017 18.4 0.0 0.0044 17.2 0.0 1.7 1 1 0 1 1 1 1 4Fe-4S single cluster domain TP_methylase PF00590.20 gi|257387727|ref|YP_003177500.1| - 0.0069 16.4 0.3 0.06 13.3 0.0 2.6 2 1 1 3 3 3 1 Tetrapyrrole (Corrin/Porphyrin) Methylases HTH_10 PF04967.12 gi|257387728|ref|YP_003177501.1| - 8.6e-21 73.5 0.1 1.4e-20 72.8 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain BAT PF15915.5 gi|257387728|ref|YP_003177501.1| - 1.4e-08 34.8 7.4 8.3e-08 32.2 7.1 2.3 2 1 0 2 2 2 1 GAF and HTH_10 associated domain HTH_20 PF12840.7 gi|257387728|ref|YP_003177501.1| - 0.0039 17.2 0.2 0.073 13.1 0.0 2.6 3 0 0 3 3 3 1 Helix-turn-helix domain GerE PF00196.19 gi|257387728|ref|YP_003177501.1| - 0.0064 16.0 0.2 0.054 13.0 0.2 2.0 1 1 0 1 1 1 1 Bacterial regulatory proteins, luxR family Sigma70_r4 PF04545.16 gi|257387728|ref|YP_003177501.1| - 0.0093 15.5 0.0 0.02 14.4 0.0 1.6 1 1 0 1 1 1 1 Sigma-70, region 4 Secretogranin_V PF05281.11 gi|257387728|ref|YP_003177501.1| - 0.033 13.8 0.1 0.049 13.2 0.1 1.3 1 0 0 1 1 1 0 Neuroendocrine protein 7B2 precursor (Secretogranin V) HTH_5 PF01022.20 gi|257387728|ref|YP_003177501.1| - 0.039 13.8 0.0 0.092 12.6 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Sigma70_r4_2 PF08281.12 gi|257387728|ref|YP_003177501.1| - 0.068 12.9 0.4 3.6 7.3 0.1 2.6 3 0 0 3 3 3 0 Sigma-70, region 4 LexA_DNA_bind PF01726.16 gi|257387728|ref|YP_003177501.1| - 0.074 12.8 0.1 0.23 11.3 0.1 1.8 1 1 0 1 1 1 0 LexA DNA binding domain MerR PF00376.23 gi|257387728|ref|YP_003177501.1| - 0.1 12.4 0.0 0.29 11.0 0.0 1.8 1 0 0 1 1 1 0 MerR family regulatory protein HTH_24 PF13412.6 gi|257387728|ref|YP_003177501.1| - 0.16 11.5 0.1 0.47 10.1 0.0 1.7 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_40 PF14493.6 gi|257387728|ref|YP_003177501.1| - 0.19 12.2 0.0 0.57 10.7 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain DUF1761 PF08570.10 gi|257387729|ref|YP_003177502.1| - 2.9 8.1 13.7 1.2 9.4 0.6 3.1 2 1 0 2 2 2 0 Protein of unknown function (DUF1761) SHOCT PF09851.9 gi|257387730|ref|YP_003177503.1| - 2e-08 33.7 2.9 2e-08 33.7 2.9 1.9 2 0 0 2 2 2 1 Short C-terminal domain DUF1707 PF08044.11 gi|257387730|ref|YP_003177503.1| - 0.002 18.2 4.8 0.002 18.2 4.8 2.0 2 1 1 3 3 3 1 Domain of unknown function (DUF1707) DUF3099 PF11298.8 gi|257387730|ref|YP_003177503.1| - 0.0095 16.0 0.0 0.015 15.4 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3099) GvpG PF05120.12 gi|257387730|ref|YP_003177503.1| - 0.017 15.2 6.4 0.026 14.5 6.4 1.3 1 0 0 1 1 1 0 Gas vesicle protein G Hexapep_2 PF14602.6 gi|257387731|ref|YP_003177504.1| - 9.8e-11 41.2 2.1 3.4e-06 26.7 0.1 3.2 3 0 0 3 3 3 3 Hexapeptide repeat of succinyl-transferase Hexapep PF00132.24 gi|257387731|ref|YP_003177504.1| - 4.3e-10 38.9 4.1 5.5e-07 29.1 0.3 3.4 3 0 0 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Amino_oxidase PF01593.24 gi|257387732|ref|YP_003177505.1| - 1.2e-30 107.3 0.2 1.7e-30 106.7 0.2 1.2 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|257387732|ref|YP_003177505.1| - 6e-16 58.4 2.2 1.4e-15 57.3 0.6 2.4 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|257387732|ref|YP_003177505.1| - 1.3e-10 41.5 11.4 1.6e-09 37.8 11.4 2.3 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|257387732|ref|YP_003177505.1| - 1.6e-07 30.8 1.1 7e-05 22.2 0.3 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|257387732|ref|YP_003177505.1| - 9.1e-07 29.4 1.7 0.00075 20.0 0.9 2.8 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|257387732|ref|YP_003177505.1| - 4.6e-06 25.6 0.1 0.016 13.9 0.2 2.1 2 0 0 2 2 2 2 HI0933-like protein FAD_oxidored PF12831.7 gi|257387732|ref|YP_003177505.1| - 1.5e-05 24.6 0.0 3.2e-05 23.5 0.0 1.6 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|257387732|ref|YP_003177505.1| - 4.8e-05 22.8 0.8 0.00011 21.5 0.8 1.6 1 0 0 1 1 1 1 FAD binding domain FAD_binding_2 PF00890.24 gi|257387732|ref|YP_003177505.1| - 8.9e-05 21.7 2.1 0.00024 20.3 2.1 1.7 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_3 PF13738.6 gi|257387732|ref|YP_003177505.1| - 0.00069 19.0 0.1 1.1 8.4 0.0 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|257387732|ref|YP_003177505.1| - 0.0012 18.2 0.4 0.0022 17.3 0.4 1.3 1 0 0 1 1 1 1 Thi4 family GIDA PF01134.22 gi|257387732|ref|YP_003177505.1| - 0.0019 17.4 1.4 0.0032 16.6 1.4 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A AlaDh_PNT_C PF01262.21 gi|257387732|ref|YP_003177505.1| - 0.16 11.2 0.3 0.27 10.5 0.3 1.2 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain 3HCDH_N PF02737.18 gi|257387732|ref|YP_003177505.1| - 0.33 10.8 0.6 0.61 9.9 0.6 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Trp_halogenase PF04820.14 gi|257387732|ref|YP_003177505.1| - 1.3 7.7 3.8 0.88 8.3 0.4 2.0 2 0 0 2 2 2 0 Tryptophan halogenase BCD PF15461.6 gi|257387733|ref|YP_003177506.1| - 3.8e-74 249.6 22.0 4.8e-74 249.2 22.0 1.1 1 0 0 1 1 1 1 Beta-carotene 15,15'-dioxygenase PH_6 PF15406.6 gi|257387734|ref|YP_003177507.1| - 0.13 12.6 0.0 0.26 11.6 0.0 1.5 1 0 0 1 1 1 0 Pleckstrin homology domain GAF PF01590.26 gi|257387735|ref|YP_003177508.1| - 4.4e-10 40.3 0.1 1e-09 39.1 0.1 1.6 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.6 gi|257387735|ref|YP_003177508.1| - 2e-05 25.0 0.0 4.5e-05 23.8 0.0 1.6 1 0 0 1 1 1 1 GAF domain GAF_2 PF13185.6 gi|257387735|ref|YP_003177508.1| - 0.00012 22.3 0.5 0.00068 19.9 0.1 2.3 1 1 1 2 2 2 1 GAF domain Response_reg PF00072.24 gi|257387735|ref|YP_003177508.1| - 0.0092 16.1 0.0 0.019 15.1 0.0 1.6 1 0 0 1 1 1 1 Response regulator receiver domain TFIIB PF00382.19 gi|257387736|ref|YP_003177509.1| - 0.026 14.5 0.1 1.7 8.7 0.0 3.2 3 0 0 3 3 3 0 Transcription factor TFIIB repeat GETHR PF05671.11 gi|257387736|ref|YP_003177509.1| - 1.3 8.5 3.5 41 3.7 3.5 2.7 1 1 0 1 1 1 0 GETHR pentapeptide repeat (5 copies) BPD_transp_1 PF00528.22 gi|257387737|ref|YP_003177510.1| - 6.3e-16 58.6 8.1 6.3e-16 58.6 8.1 1.8 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SpoVAB PF13782.6 gi|257387737|ref|YP_003177510.1| - 0.063 13.6 1.9 0.19 12.0 1.9 1.8 1 0 0 1 1 1 0 Stage V sporulation protein AB ABC_tran PF00005.27 gi|257387738|ref|YP_003177511.1| - 3.6e-32 111.7 0.0 4.5e-32 111.4 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|257387738|ref|YP_003177511.1| - 1.1e-13 51.7 0.0 5.2e-06 26.5 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|257387738|ref|YP_003177511.1| - 2.4e-07 30.4 0.0 0.00014 21.4 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|257387738|ref|YP_003177511.1| - 5.9e-05 22.7 0.0 0.00012 21.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|257387738|ref|YP_003177511.1| - 0.0002 21.1 0.0 0.00027 20.7 0.0 1.3 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|257387738|ref|YP_003177511.1| - 0.00054 20.5 0.0 0.00078 20.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|257387738|ref|YP_003177511.1| - 0.00089 19.7 0.0 0.0011 19.3 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain ATPase_2 PF01637.18 gi|257387738|ref|YP_003177511.1| - 0.0026 17.7 0.0 0.0039 17.1 0.0 1.2 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_15 PF13175.6 gi|257387738|ref|YP_003177511.1| - 0.0031 17.3 0.0 0.0049 16.6 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain ABC_ATPase PF09818.9 gi|257387738|ref|YP_003177511.1| - 0.0032 16.3 0.0 0.32 9.8 0.0 2.1 2 0 0 2 2 2 1 Predicted ATPase of the ABC class RsgA_GTPase PF03193.16 gi|257387738|ref|YP_003177511.1| - 0.005 16.8 0.0 0.0077 16.1 0.0 1.2 1 0 0 1 1 1 1 RsgA GTPase AAA_22 PF13401.6 gi|257387738|ref|YP_003177511.1| - 0.0064 16.8 0.0 0.014 15.7 0.0 1.6 2 0 0 2 2 2 1 AAA domain AAA_27 PF13514.6 gi|257387738|ref|YP_003177511.1| - 0.0093 15.6 0.0 0.017 14.8 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_18 PF13238.6 gi|257387738|ref|YP_003177511.1| - 0.021 15.4 0.0 0.041 14.4 0.0 1.6 2 0 0 2 2 1 0 AAA domain AAA_33 PF13671.6 gi|257387738|ref|YP_003177511.1| - 0.038 14.2 0.0 0.056 13.6 0.0 1.4 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 gi|257387738|ref|YP_003177511.1| - 0.071 13.4 0.2 0.93 9.8 0.2 2.5 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_13 PF13166.6 gi|257387738|ref|YP_003177511.1| - 0.091 11.4 0.0 5.8 5.4 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|257387738|ref|YP_003177511.1| - 0.095 12.4 0.0 0.13 12.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|257387738|ref|YP_003177511.1| - 0.12 11.6 0.0 0.19 11.0 0.0 1.2 1 0 0 1 1 1 0 Zeta toxin RecA PF00154.21 gi|257387738|ref|YP_003177511.1| - 0.13 11.7 0.0 0.51 9.8 0.0 1.8 1 1 1 2 2 2 0 recA bacterial DNA recombination protein MMR_HSR1 PF01926.23 gi|257387738|ref|YP_003177511.1| - 0.15 12.1 0.1 0.42 10.7 0.1 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase Adeno_IVa2 PF02456.15 gi|257387738|ref|YP_003177511.1| - 0.16 10.8 0.0 0.27 10.0 0.0 1.3 1 0 0 1 1 1 0 Adenovirus IVa2 protein NB-ARC PF00931.22 gi|257387738|ref|YP_003177511.1| - 0.17 11.1 0.0 0.26 10.5 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain NACHT PF05729.12 gi|257387738|ref|YP_003177511.1| - 0.18 11.7 0.0 0.28 11.1 0.0 1.3 1 0 0 1 1 1 0 NACHT domain BPD_transp_1 PF00528.22 gi|257387739|ref|YP_003177512.1| - 1.6e-18 67.1 6.9 1.6e-18 67.1 6.9 1.5 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component SBP_bac_3 PF00497.20 gi|257387740|ref|YP_003177513.1| - 1.4e-53 181.6 0.0 1.7e-53 181.4 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 3 Lig_chan-Glu_bd PF10613.9 gi|257387740|ref|YP_003177513.1| - 9.1e-07 29.1 0.0 1.6e-06 28.3 0.0 1.4 1 0 0 1 1 1 1 Ligated ion channel L-glutamate- and glycine-binding site NMT1 PF09084.11 gi|257387740|ref|YP_003177513.1| - 0.00014 21.9 0.1 0.00041 20.4 0.0 1.7 2 0 0 2 2 2 1 NMT1/THI5 like TAT_signal PF10518.9 gi|257387740|ref|YP_003177513.1| - 0.0037 17.0 0.6 0.007 16.2 0.6 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence MapZ_C2 PF18708.1 gi|257387741|ref|YP_003177514.1| - 0.11 12.8 0.0 0.19 12.0 0.0 1.3 1 0 0 1 1 1 0 MapZ extracellular C-terminal domain 2 SelB-wing_2 PF09106.11 gi|257387741|ref|YP_003177514.1| - 0.14 12.4 0.0 0.3 11.3 0.0 1.5 1 0 0 1 1 1 0 Elongation factor SelB, winged helix SPX PF03105.19 gi|257387741|ref|YP_003177514.1| - 1.8 8.4 9.2 2.3 8.0 9.2 1.2 1 0 0 1 1 1 0 SPX domain Acetyltransf_1 PF00583.25 gi|257387742|ref|YP_003177515.1| - 5.9e-09 36.2 0.0 7.5e-09 35.8 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_3 PF13302.7 gi|257387742|ref|YP_003177515.1| - 7.8e-05 23.4 0.0 9.9e-05 23.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|257387742|ref|YP_003177515.1| - 0.00025 21.0 0.0 0.00035 20.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|257387742|ref|YP_003177515.1| - 0.0014 19.0 0.0 0.0021 18.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_6 PF13480.7 gi|257387742|ref|YP_003177515.1| - 0.067 13.3 0.5 0.14 12.3 0.5 1.7 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain NIF3 PF01784.18 gi|257387743|ref|YP_003177516.1| - 5.7e-55 186.6 0.0 6.6e-55 186.4 0.0 1.0 1 0 0 1 1 1 1 NIF3 (NGG1p interacting factor 3) Usp PF00582.26 gi|257387743|ref|YP_003177516.1| - 0.00066 20.2 1.5 0.46 11.0 0.1 2.2 2 0 0 2 2 2 2 Universal stress protein family Glyoxalase_4 PF13669.6 gi|257387743|ref|YP_003177516.1| - 0.0056 16.9 0.7 0.024 14.9 0.1 2.2 2 1 1 3 3 3 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AP_endonuc_2 PF01261.24 gi|257387743|ref|YP_003177516.1| - 0.0099 15.3 0.3 0.055 12.9 0.0 2.2 2 1 0 2 2 2 1 Xylose isomerase-like TIM barrel SprT-like PF10263.9 gi|257387744|ref|YP_003177517.1| - 1.4e-05 24.9 0.1 1.7e-05 24.6 0.1 1.3 1 0 0 1 1 1 1 SprT-like family LRR_RI_capping PF18779.1 gi|257387744|ref|YP_003177517.1| - 0.18 11.5 1.7 0.32 10.7 0.0 2.2 3 0 0 3 3 3 0 Capping Ribonuclease inhibitor Leucine Rich Repeat DUF4157 PF13699.6 gi|257387744|ref|YP_003177517.1| - 0.19 12.0 1.6 0.28 11.4 0.3 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4157) HTH_24 PF13412.6 gi|257387745|ref|YP_003177518.1| - 8.5e-05 22.0 0.1 9.7e-05 21.8 0.1 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|257387745|ref|YP_003177518.1| - 0.02 14.7 0.1 0.042 13.7 0.1 1.5 1 1 1 2 2 2 0 AsnC-type helix-turn-helix domain E3_UFM1_ligase PF09743.9 gi|257387745|ref|YP_003177518.1| - 0.045 13.4 0.0 0.051 13.2 0.0 1.0 1 0 0 1 1 1 0 E3 UFM1-protein ligase 1 Dimerisation PF08100.11 gi|257387745|ref|YP_003177518.1| - 0.056 13.5 0.1 0.08 13.0 0.1 1.2 1 0 0 1 1 1 0 Dimerisation domain HTH_17 PF12728.7 gi|257387745|ref|YP_003177518.1| - 0.065 13.4 0.0 0.12 12.6 0.0 1.4 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_20 PF12840.7 gi|257387745|ref|YP_003177518.1| - 0.094 12.8 0.0 0.11 12.6 0.0 1.1 1 0 0 1 1 1 0 Helix-turn-helix domain HEPN_RiboL-PSP PF18735.1 gi|257387746|ref|YP_003177519.1| - 0.006 16.5 2.3 0.006 16.5 2.3 3.3 4 0 0 4 4 4 1 RiboL-PSP-HEPN DUF4145 PF13643.6 gi|257387746|ref|YP_003177519.1| - 0.013 15.6 0.5 0.036 14.2 0.4 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF4145) DUF86 PF01934.17 gi|257387746|ref|YP_003177519.1| - 0.027 14.3 1.5 0.35 10.7 0.1 2.5 2 0 0 2 2 2 0 Protein of unknown function DUF86 HEPN_Apea PF18739.1 gi|257387746|ref|YP_003177519.1| - 0.077 13.4 1.1 0.2 12.1 1.1 1.7 1 0 0 1 1 1 0 Apea-like HEPN DUF4358 PF14270.6 gi|257387746|ref|YP_003177519.1| - 1.9 8.8 5.4 2.6 8.4 0.1 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF4358) Phage_integrase PF00589.22 gi|257387747|ref|YP_003177520.1| - 7.2e-06 25.9 0.0 2.1e-05 24.4 0.0 1.8 2 0 0 2 2 2 1 Phage integrase family Phage_int_SAM_5 PF13102.6 gi|257387747|ref|YP_003177520.1| - 0.00025 21.3 0.1 0.0015 18.8 0.0 2.2 3 0 0 3 3 3 1 Phage integrase SAM-like domain Phage_int_SAM_1 PF02899.17 gi|257387747|ref|YP_003177520.1| - 0.0011 19.3 0.2 0.0023 18.2 0.2 1.6 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Nudix_N_2 PF14803.6 gi|257387748|ref|YP_003177521.1| - 0.046 13.6 1.1 5.6 7.0 0.1 2.6 2 0 0 2 2 2 0 Nudix N-terminal zinc_ribbon_4 PF13717.6 gi|257387748|ref|YP_003177521.1| - 0.052 13.5 0.2 0.18 11.8 0.1 2.0 2 0 0 2 2 2 0 zinc-ribbon domain RHH_1 PF01402.21 gi|257387749|ref|YP_003177522.1| - 0.031 14.2 0.0 0.045 13.7 0.0 1.3 1 0 0 1 1 1 0 Ribbon-helix-helix protein, copG family Mrr_N PF14338.6 gi|257387750|ref|YP_003177523.1| - 0.00061 19.9 0.0 0.00083 19.4 0.0 1.3 1 0 0 1 1 1 1 Mrr N-terminal domain MarR_2 PF12802.7 gi|257387750|ref|YP_003177523.1| - 0.0013 18.6 0.0 0.002 18.0 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_45 PF14947.6 gi|257387750|ref|YP_003177523.1| - 0.0058 16.6 0.0 0.0079 16.2 0.0 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix DUF4313 PF14190.6 gi|257387750|ref|YP_003177523.1| - 0.018 15.0 0.0 0.026 14.5 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4313) HTH_24 PF13412.6 gi|257387750|ref|YP_003177523.1| - 0.033 13.8 0.2 0.79 9.3 0.0 2.3 2 1 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|257387750|ref|YP_003177523.1| - 0.047 13.7 0.2 0.075 13.0 0.2 1.5 1 1 0 1 1 1 0 HTH domain HTH_AsnC-type PF13404.6 gi|257387751|ref|YP_003177524.1| - 0.09 12.6 0.0 0.12 12.2 0.0 1.3 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain LtrA PF06772.11 gi|257387751|ref|YP_003177524.1| - 0.1 11.8 0.0 0.11 11.7 0.0 1.0 1 0 0 1 1 1 0 Bacterial low temperature requirement A protein (LtrA) Hypoth_Ymh PF09509.10 gi|257387752|ref|YP_003177525.1| - 3.8e-24 84.9 0.0 5.9e-24 84.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (Hypoth_ymh) DUF4031 PF13223.6 gi|257387752|ref|YP_003177525.1| - 0.11 12.7 0.1 0.23 11.7 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF4031) DDE_Tnp_IS1595 PF12762.7 gi|257387753|ref|YP_003177526.1| - 2.9e-22 79.3 0.0 4.1e-22 78.8 0.0 1.2 1 0 0 1 1 1 1 ISXO2-like transposase domain Zn_Tnp_IS1595 PF12760.7 gi|257387753|ref|YP_003177526.1| - 3.9e-10 39.5 0.9 8e-10 38.5 0.9 1.6 1 0 0 1 1 1 1 Transposase zinc-ribbon domain DUF2089 PF09862.9 gi|257387753|ref|YP_003177526.1| - 5.9e-07 29.5 0.0 1e-06 28.8 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2089) Zn_Tnp_IS1 PF03811.13 gi|257387753|ref|YP_003177526.1| - 1.5e-05 24.6 4.0 3.8e-05 23.3 4.0 1.7 1 0 0 1 1 1 1 InsA N-terminal domain TackOD1 PF18551.1 gi|257387753|ref|YP_003177526.1| - 0.007 16.1 0.2 0.011 15.4 0.2 1.2 1 0 0 1 1 1 1 Thaumarchaeal output domain 1 Zn-ribbon_8 PF09723.10 gi|257387753|ref|YP_003177526.1| - 0.017 15.2 0.5 3.1 8.0 0.1 2.5 2 0 0 2 2 2 0 Zinc ribbon domain HTH_23 PF13384.6 gi|257387753|ref|YP_003177526.1| - 0.023 14.5 0.0 0.082 12.7 0.0 1.9 1 0 0 1 1 1 0 Homeodomain-like domain HTH_29 PF13551.6 gi|257387753|ref|YP_003177526.1| - 0.023 14.7 0.1 0.094 12.7 0.1 2.0 1 0 0 1 1 1 0 Winged helix-turn helix ADK_lid PF05191.14 gi|257387753|ref|YP_003177526.1| - 0.041 13.9 2.6 0.041 13.9 0.1 2.1 2 0 0 2 2 2 0 Adenylate kinase, active site lid GerE PF00196.19 gi|257387753|ref|YP_003177526.1| - 0.041 13.4 0.0 0.085 12.4 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family zf-C4_Topoisom PF01396.19 gi|257387753|ref|YP_003177526.1| - 0.047 13.5 1.3 0.094 12.5 1.3 1.5 1 0 0 1 1 1 0 Topoisomerase DNA binding C4 zinc finger Sigma70_r4_2 PF08281.12 gi|257387753|ref|YP_003177526.1| - 0.099 12.3 0.0 0.3 10.8 0.0 1.8 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_11 PF08279.12 gi|257387753|ref|YP_003177526.1| - 0.1 12.6 0.0 0.2 11.6 0.0 1.5 1 0 0 1 1 1 0 HTH domain zinc-ribbons_6 PF07191.12 gi|257387753|ref|YP_003177526.1| - 0.11 12.4 0.3 0.2 11.6 0.3 1.4 1 0 0 1 1 1 0 zinc-ribbons Lar_restr_allev PF14354.6 gi|257387753|ref|YP_003177526.1| - 0.12 12.8 0.1 0.26 11.7 0.1 1.5 1 0 0 1 1 1 0 Restriction alleviation protein Lar zf-Dof PF02701.15 gi|257387753|ref|YP_003177526.1| - 0.18 12.0 3.5 0.37 11.0 3.5 1.5 1 0 0 1 1 1 0 Dof domain, zinc finger zf-C2H2_4 PF13894.6 gi|257387753|ref|YP_003177526.1| - 0.46 11.5 3.6 1.1 10.3 0.2 3.1 3 0 0 3 3 3 0 C2H2-type zinc finger zf-ISL3 PF14690.6 gi|257387753|ref|YP_003177526.1| - 0.84 10.4 5.8 7.6 7.3 0.2 2.9 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn_ribbon_recom PF13408.6 gi|257387753|ref|YP_003177526.1| - 2 9.0 6.4 2.3 8.8 4.8 2.0 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain zf-C2HC_2 PF13913.6 gi|257387753|ref|YP_003177526.1| - 4.9 7.2 8.0 0.23 11.4 1.4 2.1 2 0 0 2 2 2 0 zinc-finger of a C2HC-type Gp49 PF05973.14 gi|257387755|ref|YP_003177528.1| - 0.077 13.1 0.0 0.14 12.3 0.0 1.4 1 1 0 1 1 1 0 Phage derived protein Gp49-like (DUF891) Phage_integrase PF00589.22 gi|257387756|ref|YP_003177529.1| - 2.1e-17 63.5 0.0 2.6e-17 63.2 0.0 1.1 1 0 0 1 1 1 1 Phage integrase family Integrase_1 PF12835.7 gi|257387756|ref|YP_003177529.1| - 1.4e-06 28.5 0.1 2.3e-06 27.8 0.1 1.3 1 0 0 1 1 1 1 Integrase PIN PF01850.21 gi|257387757|ref|YP_003177530.1| - 1.9e-10 41.3 0.0 2.2e-10 41.1 0.0 1.1 1 0 0 1 1 1 1 PIN domain MazE_antitoxin PF04014.18 gi|257387758|ref|YP_003177531.1| - 2.6e-08 33.6 0.2 3.3e-08 33.2 0.2 1.1 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin PrlF_antitoxin PF15937.5 gi|257387758|ref|YP_003177531.1| - 5.7e-06 26.7 0.0 6.8e-06 26.5 0.0 1.1 1 0 0 1 1 1 1 prlF antitoxin for toxin YhaV_toxin DUF1206 PF06724.11 gi|257387761|ref|YP_003177534.1| - 0.011 15.8 2.3 0.011 15.8 2.3 2.8 1 1 1 2 2 2 0 Domain of Unknown Function (DUF1206) AAA_22 PF13401.6 gi|257387771|ref|YP_003177544.1| - 0.0044 17.3 0.0 0.014 15.6 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|257387771|ref|YP_003177544.1| - 0.016 15.6 0.1 0.025 15.0 0.1 1.3 1 0 0 1 1 1 0 AAA ATPase domain Zeta_toxin PF06414.12 gi|257387771|ref|YP_003177544.1| - 0.028 13.7 0.0 0.054 12.8 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin DUF853 PF05872.12 gi|257387771|ref|YP_003177544.1| - 0.069 11.7 0.0 6.4 5.2 0.0 2.0 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF853) IFT57 PF10498.9 gi|257387774|ref|YP_003177547.1| - 2.8 6.8 7.1 3.6 6.4 7.1 1.3 1 0 0 1 1 1 0 Intra-flagellar transport protein 57 SDA1 PF05285.12 gi|257387774|ref|YP_003177547.1| - 9 5.6 14.0 10 5.5 14.0 1.1 1 0 0 1 1 1 0 SDA1 BUD22 PF09073.10 gi|257387775|ref|YP_003177548.1| - 1.4 8.1 17.1 2.3 7.4 17.1 1.3 1 0 0 1 1 1 0 BUD22 Zip PF02535.22 gi|257387775|ref|YP_003177548.1| - 8.2 5.5 5.4 11 5.1 5.4 1.4 1 1 0 1 1 1 0 ZIP Zinc transporter CDC45 PF02724.14 gi|257387775|ref|YP_003177548.1| - 9.3 4.4 9.3 10 4.2 9.3 1.2 1 0 0 1 1 1 0 CDC45-like protein DNA_methylase PF00145.17 gi|257387778|ref|YP_003177551.1| - 1.5e-10 41.0 0.0 2.7e-10 40.1 0.0 1.4 1 1 0 1 1 1 1 C-5 cytosine-specific DNA methylase FtsJ PF01728.19 gi|257387778|ref|YP_003177551.1| - 0.21 11.7 0.0 0.32 11.1 0.0 1.3 1 0 0 1 1 1 0 FtsJ-like methyltransferase RHH_1 PF01402.21 gi|257387779|ref|YP_003177552.1| - 0.0055 16.6 0.2 0.013 15.4 0.0 1.7 2 0 0 2 2 2 1 Ribbon-helix-helix protein, copG family GST_C_2 PF13410.6 gi|257387779|ref|YP_003177552.1| - 0.075 13.1 0.2 0.11 12.5 0.2 1.4 1 1 0 1 1 1 0 Glutathione S-transferase, C-terminal domain TruB_C_2 PF16198.5 gi|257387781|ref|YP_003177554.1| - 9.9e-24 83.3 0.3 2.2e-23 82.2 0.3 1.6 1 0 0 1 1 1 1 tRNA pseudouridylate synthase B C-terminal domain TruB_N PF01509.18 gi|257387781|ref|YP_003177554.1| - 2.8e-21 76.4 0.1 3.7e-11 43.6 0.0 3.2 1 1 1 2 2 2 2 TruB family pseudouridylate synthase (N terminal domain) DKCLD PF08068.12 gi|257387781|ref|YP_003177554.1| - 1.1e-07 31.8 0.0 4e-07 30.0 0.1 1.8 2 0 0 2 2 2 1 DKCLD (NUC011) domain PUA PF01472.20 gi|257387781|ref|YP_003177554.1| - 6.5e-06 26.0 0.4 1.4e-05 24.9 0.4 1.7 1 0 0 1 1 1 1 PUA domain DBD_HTH PF18430.1 gi|257387781|ref|YP_003177554.1| - 0.11 12.2 0.3 0.27 11.0 0.3 1.6 1 0 0 1 1 1 0 Putative DNA-binding domain Cytidylate_kin2 PF13189.6 gi|257387782|ref|YP_003177555.1| - 3.4e-24 85.9 2.4 1.1e-21 77.8 2.4 2.0 1 1 0 1 1 1 1 Cytidylate kinase-like family AAA_18 PF13238.6 gi|257387782|ref|YP_003177555.1| - 2.8e-18 66.7 0.1 3.6e-18 66.3 0.1 1.1 1 0 0 1 1 1 1 AAA domain Cytidylate_kin PF02224.18 gi|257387782|ref|YP_003177555.1| - 8.1e-15 55.1 0.6 4.8e-08 33.0 0.1 2.1 1 1 1 2 2 2 2 Cytidylate kinase AAA_17 PF13207.6 gi|257387782|ref|YP_003177555.1| - 1.7e-14 54.4 0.1 2.7e-14 53.8 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|257387782|ref|YP_003177555.1| - 2.9e-11 43.7 0.4 1.1e-09 38.5 0.4 2.1 1 1 0 1 1 1 1 AAA domain ADK PF00406.22 gi|257387782|ref|YP_003177555.1| - 8e-06 26.0 0.1 2.6e-05 24.4 0.0 1.7 1 1 1 2 2 2 1 Adenylate kinase SKI PF01202.22 gi|257387782|ref|YP_003177555.1| - 1.5e-05 25.1 0.8 0.00017 21.8 0.8 2.1 1 1 0 1 1 1 1 Shikimate kinase AAA_16 PF13191.6 gi|257387782|ref|YP_003177555.1| - 4.8e-05 23.8 0.6 7.3e-05 23.2 0.6 1.3 1 1 0 1 1 1 1 AAA ATPase domain AAA_28 PF13521.6 gi|257387782|ref|YP_003177555.1| - 5.9e-05 23.4 0.1 0.00015 22.0 0.0 1.6 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|257387782|ref|YP_003177555.1| - 6.5e-05 23.2 0.0 7.5e-05 23.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain dNK PF01712.19 gi|257387782|ref|YP_003177555.1| - 0.00027 20.9 0.0 0.0056 16.6 0.0 2.2 2 0 0 2 2 2 1 Deoxynucleoside kinase CoaE PF01121.20 gi|257387782|ref|YP_003177555.1| - 0.00045 19.9 0.7 0.018 14.7 0.1 2.1 1 1 1 2 2 2 1 Dephospho-CoA kinase NACHT PF05729.12 gi|257387782|ref|YP_003177555.1| - 0.0007 19.6 0.0 0.00099 19.1 0.0 1.4 1 0 0 1 1 1 1 NACHT domain AAA PF00004.29 gi|257387782|ref|YP_003177555.1| - 0.0062 17.0 0.0 0.0096 16.4 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_30 PF13604.6 gi|257387782|ref|YP_003177555.1| - 0.0083 15.9 1.6 0.34 10.6 0.2 2.3 1 1 1 2 2 2 1 AAA domain Thymidylate_kin PF02223.17 gi|257387782|ref|YP_003177555.1| - 0.012 15.2 0.3 5 6.7 0.1 2.3 1 1 0 2 2 2 0 Thymidylate kinase RNA_helicase PF00910.22 gi|257387782|ref|YP_003177555.1| - 0.013 15.8 0.0 0.022 15.2 0.0 1.4 1 0 0 1 1 1 0 RNA helicase NB-ARC PF00931.22 gi|257387782|ref|YP_003177555.1| - 0.018 14.2 0.0 0.023 13.9 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain PRK PF00485.18 gi|257387782|ref|YP_003177555.1| - 0.019 14.7 0.2 0.13 12.0 0.0 2.0 1 1 1 2 2 2 0 Phosphoribulokinase / Uridine kinase family DUF2075 PF09848.9 gi|257387782|ref|YP_003177555.1| - 0.025 13.8 0.0 0.035 13.4 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) CbiA PF01656.23 gi|257387782|ref|YP_003177555.1| - 0.028 14.5 0.3 0.066 13.3 0.1 1.7 2 0 0 2 2 2 0 CobQ/CobB/MinD/ParA nucleotide binding domain ABC_tran PF00005.27 gi|257387782|ref|YP_003177555.1| - 0.04 14.4 0.0 0.049 14.1 0.0 1.4 1 1 0 1 1 1 0 ABC transporter NTPase_1 PF03266.15 gi|257387782|ref|YP_003177555.1| - 0.044 13.7 0.0 0.068 13.1 0.0 1.4 1 0 0 1 1 1 0 NTPase KTI12 PF08433.10 gi|257387782|ref|YP_003177555.1| - 0.048 13.1 0.0 0.07 12.6 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 T2SSE PF00437.20 gi|257387782|ref|YP_003177555.1| - 0.057 12.5 0.7 0.11 11.6 0.7 1.6 1 1 0 1 1 1 0 Type II/IV secretion system protein ParA PF10609.9 gi|257387782|ref|YP_003177555.1| - 0.064 12.7 0.2 0.46 9.9 0.2 1.9 2 0 0 2 2 2 0 NUBPL iron-transfer P-loop NTPase TsaE PF02367.17 gi|257387782|ref|YP_003177555.1| - 0.083 12.9 0.1 0.32 11.0 0.1 1.9 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE APS_kinase PF01583.20 gi|257387782|ref|YP_003177555.1| - 0.09 12.7 0.0 0.18 11.7 0.0 1.6 1 0 0 1 1 1 0 Adenylylsulphate kinase CobU PF02283.16 gi|257387782|ref|YP_003177555.1| - 0.1 12.1 0.3 0.26 10.9 0.1 1.7 2 0 0 2 2 2 0 Cobinamide kinase / cobinamide phosphate guanyltransferase ATPase_2 PF01637.18 gi|257387782|ref|YP_003177555.1| - 0.12 12.2 0.0 0.13 12.2 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea ATP_bind_1 PF03029.17 gi|257387782|ref|YP_003177555.1| - 0.13 12.0 0.0 0.23 11.2 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_29 PF13555.6 gi|257387782|ref|YP_003177555.1| - 0.13 12.0 0.2 0.25 11.1 0.2 1.3 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_14 PF13173.6 gi|257387782|ref|YP_003177555.1| - 0.16 12.0 0.0 0.28 11.2 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|257387782|ref|YP_003177555.1| - 0.2 11.2 4.8 1.4 8.4 4.8 2.1 1 1 0 1 1 1 0 AAA domain Viral_helicase1 PF01443.18 gi|257387782|ref|YP_003177555.1| - 0.21 11.3 0.0 0.3 10.8 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase EMC3_TMCO1 PF01956.16 gi|257387783|ref|YP_003177556.1| - 1.9e-47 161.1 0.4 2.4e-47 160.8 0.4 1.1 1 0 0 1 1 1 1 Integral membrane protein EMC3/TMCO1-like 60KD_IMP PF02096.20 gi|257387783|ref|YP_003177556.1| - 0.00013 21.9 0.2 0.00021 21.2 0.2 1.3 1 0 0 1 1 1 1 60Kd inner membrane protein DUF4199 PF13858.6 gi|257387783|ref|YP_003177556.1| - 0.045 14.2 1.2 0.079 13.4 0.4 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF4199) ADK PF00406.22 gi|257387784|ref|YP_003177557.1| - 3.4e-41 140.8 0.0 4.3e-41 140.5 0.0 1.1 1 0 0 1 1 1 1 Adenylate kinase AAA_17 PF13207.6 gi|257387784|ref|YP_003177557.1| - 7.4e-21 75.0 0.3 3.1e-20 73.0 0.0 1.9 2 0 0 2 2 2 1 AAA domain ADK_lid PF05191.14 gi|257387784|ref|YP_003177557.1| - 1.2e-16 60.4 4.4 1.9e-16 59.7 4.4 1.4 1 0 0 1 1 1 1 Adenylate kinase, active site lid AAA_18 PF13238.6 gi|257387784|ref|YP_003177557.1| - 4.5e-06 27.2 0.0 8.8e-06 26.3 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|257387784|ref|YP_003177557.1| - 0.00022 21.4 0.0 0.00036 20.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain RuvB_N PF05496.12 gi|257387784|ref|YP_003177557.1| - 0.019 14.7 0.0 0.035 13.9 0.0 1.4 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain zf-IS66 PF13005.7 gi|257387784|ref|YP_003177557.1| - 0.032 14.7 0.3 1.4 9.3 0.0 2.3 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 TF_Zn_Ribbon PF08271.12 gi|257387784|ref|YP_003177557.1| - 0.042 13.4 2.1 0.1 12.1 2.1 1.7 1 0 0 1 1 1 0 TFIIB zinc-binding Cytidylate_kin PF02224.18 gi|257387784|ref|YP_003177557.1| - 0.073 12.8 0.0 0.15 11.8 0.0 1.7 1 0 0 1 1 1 0 Cytidylate kinase DZR PF12773.7 gi|257387784|ref|YP_003177557.1| - 0.093 12.8 0.5 0.18 11.9 0.5 1.4 1 1 0 1 1 1 0 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|257387784|ref|YP_003177557.1| - 0.097 12.8 0.8 0.18 12.0 0.8 1.4 1 0 0 1 1 1 0 Zinc ribbon domain Prok-RING_1 PF14446.6 gi|257387784|ref|YP_003177557.1| - 0.13 12.2 2.5 0.34 10.9 0.2 2.2 2 0 0 2 2 2 0 Prokaryotic RING finger family 1 zf-C4_Topoisom PF01396.19 gi|257387784|ref|YP_003177557.1| - 0.14 11.9 0.2 1 9.2 0.0 2.0 2 0 0 2 2 2 0 Topoisomerase DNA binding C4 zinc finger HypA PF01155.19 gi|257387784|ref|YP_003177557.1| - 0.21 11.6 0.0 0.28 11.2 0.0 1.3 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA DUF2150 PF09920.9 gi|257387785|ref|YP_003177558.1| - 6.5e-70 234.9 11.8 7.4e-70 234.8 11.8 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2150) Big_1 PF02369.16 gi|257387786|ref|YP_003177559.1| - 5.1e-07 29.6 7.6 5.1e-07 29.6 7.6 7.4 6 3 2 8 8 8 1 Bacterial Ig-like domain (group 1) GLEYA PF10528.9 gi|257387786|ref|YP_003177559.1| - 0.054 13.9 1.7 0.48 10.9 0.0 3.3 3 0 0 3 3 3 0 GLEYA domain NAD_binding_8 PF13450.6 gi|257387786|ref|YP_003177559.1| - 0.086 13.1 0.0 0.54 10.5 0.0 2.4 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain MG4 PF17789.1 gi|257387786|ref|YP_003177559.1| - 0.14 12.3 8.4 0.077 13.2 0.5 3.9 3 2 0 3 3 3 0 Macroglobulin domain MG4 DUF1573 PF07610.11 gi|257387786|ref|YP_003177559.1| - 0.17 11.9 1.3 5.1 7.2 0.0 3.4 3 0 0 3 3 3 0 Protein of unknown function (DUF1573) Phage_H_T_join PF05521.11 gi|257387786|ref|YP_003177559.1| - 0.55 10.8 2.3 1.3 9.6 0.4 2.8 3 0 0 3 3 3 0 Phage head-tail joining protein HMG_CoA_synt_N PF01154.17 gi|257387787|ref|YP_003177560.1| - 1.9e-26 93.0 0.0 2.8e-26 92.4 0.0 1.3 1 0 0 1 1 1 1 Hydroxymethylglutaryl-coenzyme A synthase N terminal HMG_CoA_synt_C PF08540.10 gi|257387787|ref|YP_003177560.1| - 1.1e-18 67.9 0.0 2.4e-18 66.8 0.0 1.5 2 0 0 2 2 2 1 Hydroxymethylglutaryl-coenzyme A synthase C terminal MAF_flag10 PF01973.18 gi|257387787|ref|YP_003177560.1| - 0.0017 18.1 0.0 0.26 10.9 0.0 2.2 1 1 1 2 2 2 2 Protein of unknown function DUF115 PQQ_2 PF13360.6 gi|257387788|ref|YP_003177561.1| - 1.4e-32 113.2 12.2 1.2e-17 64.3 0.8 3.2 1 1 2 3 3 3 3 PQQ-like domain PQQ_3 PF13570.6 gi|257387788|ref|YP_003177561.1| - 1.9e-23 82.2 30.8 9.8e-07 29.1 0.2 8.3 8 0 0 8 8 8 6 PQQ-like domain PQQ PF01011.21 gi|257387788|ref|YP_003177561.1| - 1.8e-15 56.0 12.5 0.014 15.3 0.0 8.2 5 1 3 8 8 8 5 PQQ enzyme repeat RHS PF03527.14 gi|257387788|ref|YP_003177561.1| - 0.19 11.5 1.5 25 4.7 0.0 3.8 4 0 0 4 4 4 0 RHS protein YesK PF14150.6 gi|257387789|ref|YP_003177562.1| - 0.018 15.2 0.2 0.047 13.9 0.2 1.7 1 0 0 1 1 1 0 YesK-like protein DUF998 PF06197.13 gi|257387790|ref|YP_003177563.1| - 0.021 14.4 0.1 0.029 14.0 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF998) PHP PF02811.19 gi|257387791|ref|YP_003177564.1| - 0.00013 22.3 0.5 0.00018 21.8 0.5 1.3 1 1 0 1 1 1 1 PHP domain PHP_C PF13263.6 gi|257387791|ref|YP_003177564.1| - 0.0088 15.8 0.7 0.059 13.1 0.0 2.5 3 0 0 3 3 3 1 PHP-associated SapB_2 PF03489.17 gi|257387791|ref|YP_003177564.1| - 0.18 12.0 0.0 0.31 11.2 0.0 1.3 1 0 0 1 1 1 0 Saposin-like type B, region 2 HTH_31 PF13560.6 gi|257387792|ref|YP_003177565.1| - 5.1e-08 33.2 0.1 1.8e-07 31.4 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|257387792|ref|YP_003177565.1| - 9.1e-08 32.1 0.0 2.3e-07 30.8 0.0 1.7 2 0 0 2 2 2 1 Helix-turn-helix HTH_19 PF12844.7 gi|257387792|ref|YP_003177565.1| - 0.00017 21.5 0.0 0.0005 20.0 0.0 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain YdaS_antitoxin PF15943.5 gi|257387792|ref|YP_003177565.1| - 0.14 12.1 0.0 0.34 10.8 0.0 1.8 1 0 0 1 1 1 0 Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT GP3_package PF16677.5 gi|257387792|ref|YP_003177565.1| - 0.22 11.7 0.0 0.36 11.0 0.0 1.3 1 0 0 1 1 1 0 DNA-packaging protein gp3 BRK PF07533.16 gi|257387794|ref|YP_003177567.1| - 0.028 14.1 0.0 0.07 12.8 0.0 1.7 1 0 0 1 1 1 0 BRK domain VCBS PF13517.6 gi|257387795|ref|YP_003177568.1| - 1.1e-40 138.0 68.8 4.6e-10 39.9 1.1 7.2 4 3 4 8 8 8 8 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella UnbV_ASPIC PF07593.12 gi|257387795|ref|YP_003177568.1| - 3.5e-13 49.3 0.9 7.5e-13 48.2 0.9 1.6 1 0 0 1 1 1 1 ASPIC and UnbV FG-GAP PF01839.23 gi|257387795|ref|YP_003177568.1| - 5.5e-08 32.8 50.8 0.14 12.3 1.9 8.2 7 1 1 8 8 8 5 FG-GAP repeat Cadherin-like PF12733.7 gi|257387795|ref|YP_003177568.1| - 0.0015 19.0 1.7 0.0054 17.2 1.7 1.9 1 0 0 1 1 1 1 Cadherin-like beta sandwich domain Peripla_BP_6 PF13458.6 gi|257387797|ref|YP_003177570.1| - 1.7e-56 192.4 1.8 2.2e-56 192.0 1.8 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.6 gi|257387797|ref|YP_003177570.1| - 1.6e-16 60.3 0.0 3.1e-16 59.3 0.0 1.4 1 1 0 1 1 1 1 Periplasmic binding protein domain HalX PF08663.10 gi|257387798|ref|YP_003177571.1| - 1.6e-19 70.0 3.9 5.1e-19 68.4 3.9 1.8 1 0 0 1 1 1 1 HalX domain Response_reg PF00072.24 gi|257387798|ref|YP_003177571.1| - 2.5e-18 66.3 0.3 3.6e-18 65.7 0.3 1.3 1 0 0 1 1 1 1 Response regulator receiver domain DUF677 PF05055.12 gi|257387798|ref|YP_003177571.1| - 0.026 13.4 0.0 0.035 13.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF677) Put_Phosphatase PF06888.12 gi|257387798|ref|YP_003177571.1| - 0.068 12.6 0.1 0.094 12.1 0.1 1.2 1 0 0 1 1 1 0 Putative Phosphatase MbeD_MobD PF04899.12 gi|257387798|ref|YP_003177571.1| - 0.13 12.4 0.2 0.51 10.5 0.2 2.0 1 1 0 1 1 1 0 MbeD/MobD like Pup PF05639.11 gi|257387798|ref|YP_003177571.1| - 0.25 12.3 2.0 0.28 12.1 0.3 1.9 2 0 0 2 2 2 0 Pup-like protein RVT_3 PF13456.6 gi|257387801|ref|YP_003177574.1| - 0.00018 21.3 0.1 0.00028 20.7 0.1 1.4 1 0 0 1 1 1 1 Reverse transcriptase-like RNase_H PF00075.24 gi|257387801|ref|YP_003177574.1| - 0.0053 17.0 0.0 0.0072 16.5 0.0 1.3 1 0 0 1 1 1 1 RNase H PTA_PTB PF01515.19 gi|257387802|ref|YP_003177575.1| - 1.8e-95 319.9 0.0 2.4e-95 319.5 0.0 1.2 1 0 0 1 1 1 1 Phosphate acetyl/butaryl transferase malic PF00390.19 gi|257387802|ref|YP_003177575.1| - 1.3e-29 103.3 0.0 1.9e-27 96.2 0.0 2.4 1 1 0 1 1 1 1 Malic enzyme, N-terminal domain Malic_M PF03949.15 gi|257387802|ref|YP_003177575.1| - 1.4e-20 73.6 0.6 4.6e-20 72.0 0.6 1.9 1 1 0 1 1 1 1 Malic enzyme, NAD binding domain MCPsignal PF00015.21 gi|257387803|ref|YP_003177576.1| - 3.1e-40 137.8 56.4 3.9e-38 130.9 25.7 3.9 1 1 3 4 4 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain PAS PF00989.25 gi|257387803|ref|YP_003177576.1| - 2.7e-09 37.0 0.2 4e-08 33.2 0.0 3.0 3 1 0 3 3 2 1 PAS fold PAS_4 PF08448.10 gi|257387803|ref|YP_003177576.1| - 8.6e-08 32.4 0.2 8.6e-08 32.4 0.2 4.0 4 2 1 5 5 3 1 PAS fold DUF948 PF06103.11 gi|257387803|ref|YP_003177576.1| - 1.2e-06 28.7 43.5 0.0051 17.0 5.3 5.0 3 2 1 5 5 4 3 Bacterial protein of unknown function (DUF948) PAS_9 PF13426.7 gi|257387803|ref|YP_003177576.1| - 2.6e-06 27.6 0.0 5.2e-05 23.5 0.0 2.9 2 1 0 2 2 2 1 PAS domain PAS_8 PF13188.7 gi|257387803|ref|YP_003177576.1| - 0.00012 22.1 0.0 0.00042 20.3 0.0 2.0 1 0 0 1 1 1 1 PAS domain Laminin_II PF06009.12 gi|257387803|ref|YP_003177576.1| - 0.00085 19.4 36.4 0.013 15.5 11.0 4.1 2 1 1 3 3 3 3 Laminin Domain II EzrA PF06160.12 gi|257387803|ref|YP_003177576.1| - 0.0013 17.1 25.9 0.0013 17.0 7.1 2.5 2 1 0 2 2 2 2 Septation ring formation regulator, EzrA MLTR_LBD PF17765.1 gi|257387803|ref|YP_003177576.1| - 0.0048 17.0 0.0 0.0048 17.0 0.0 3.7 4 1 2 6 6 5 1 MmyB-like transcription regulator ligand binding domain T3SSipB PF16535.5 gi|257387803|ref|YP_003177576.1| - 0.015 15.8 36.6 0.97 9.9 8.0 3.8 2 1 1 3 3 3 0 Type III cell invasion protein SipB Baculo_PEP_C PF04513.12 gi|257387803|ref|YP_003177576.1| - 0.019 15.0 30.2 0.024 14.7 3.8 4.4 2 2 1 3 3 3 0 Baculovirus polyhedron envelope protein, PEP, C terminus Rho_GDI PF02115.17 gi|257387803|ref|YP_003177576.1| - 0.032 14.0 0.0 0.078 12.7 0.0 1.6 1 0 0 1 1 1 0 RHO protein GDP dissociation inhibitor GAF PF01590.26 gi|257387803|ref|YP_003177576.1| - 0.046 14.4 0.1 0.73 10.5 0.0 2.6 1 1 1 2 2 2 0 GAF domain DUF745 PF05335.13 gi|257387803|ref|YP_003177576.1| - 0.064 13.0 47.4 0.016 15.0 9.3 3.9 1 1 2 3 3 3 0 Protein of unknown function (DUF745) DUF3450 PF11932.8 gi|257387803|ref|YP_003177576.1| - 0.068 12.5 40.2 0.12 11.7 8.4 4.1 1 1 3 4 4 4 0 Protein of unknown function (DUF3450) Collagen_mid PF15984.5 gi|257387803|ref|YP_003177576.1| - 0.075 12.8 14.2 0.48 10.1 6.1 2.6 1 1 1 2 2 2 0 Bacterial collagen, middle region DUF1664 PF07889.12 gi|257387803|ref|YP_003177576.1| - 0.093 12.8 39.3 0.095 12.7 3.8 5.6 4 1 1 6 6 6 0 Protein of unknown function (DUF1664) HAMP PF00672.25 gi|257387803|ref|YP_003177576.1| - 0.1 13.0 0.2 0.1 13.0 0.2 3.3 3 0 0 3 3 1 0 HAMP domain GCP_N_terminal PF17681.1 gi|257387803|ref|YP_003177576.1| - 0.16 11.6 8.7 5.7 6.5 5.7 3.1 1 1 1 2 2 2 0 Gamma tubulin complex component N-terminal Sec34 PF04136.15 gi|257387803|ref|YP_003177576.1| - 0.18 11.7 23.9 0.21 11.5 0.2 4.5 3 2 2 5 5 4 0 Sec34-like family Prominin PF05478.11 gi|257387803|ref|YP_003177576.1| - 0.22 9.4 18.2 0.056 11.4 4.1 2.3 1 1 1 2 2 2 0 Prominin DUF1759 PF03564.15 gi|257387803|ref|YP_003177576.1| - 0.3 11.0 12.0 8.2 6.4 0.7 4.0 3 1 1 4 4 4 0 Protein of unknown function (DUF1759) DASH_Dam1 PF08653.10 gi|257387803|ref|YP_003177576.1| - 0.38 10.6 6.1 0.94 9.3 0.5 3.8 4 0 0 4 4 4 0 DASH complex subunit Dam1 Syntaxin-6_N PF09177.11 gi|257387803|ref|YP_003177576.1| - 0.66 10.6 34.6 0.22 12.1 1.7 5.2 3 2 1 5 5 5 0 Syntaxin 6, N-terminal PAS_7 PF12860.7 gi|257387803|ref|YP_003177576.1| - 1.1 9.5 10.7 2.5 8.3 0.0 4.5 4 2 2 6 6 5 0 PAS fold ApoC-I PF04691.12 gi|257387803|ref|YP_003177576.1| - 1.1 9.2 6.7 6.4 6.8 0.2 4.9 4 1 1 5 5 5 0 Apolipoprotein C-I (ApoC-1) ECM11 PF15463.6 gi|257387803|ref|YP_003177576.1| - 1.1 9.8 13.0 0.55 10.8 0.8 4.1 3 1 0 3 3 3 0 Extracellular mutant protein 11 Spc29 PF17082.5 gi|257387803|ref|YP_003177576.1| - 1.3 8.8 6.9 0.75 9.6 2.8 2.4 2 0 0 2 2 2 0 Spindle Pole Component 29 CENP-K PF11802.8 gi|257387803|ref|YP_003177576.1| - 1.3 8.5 14.7 6.2 6.3 0.0 3.4 2 1 0 3 3 3 0 Centromere-associated protein K AIP3 PF03915.13 gi|257387803|ref|YP_003177576.1| - 1.7 7.7 30.9 1.2 8.1 11.8 2.6 1 1 1 2 2 2 0 Actin interacting protein 3 Fib_alpha PF08702.10 gi|257387803|ref|YP_003177576.1| - 3.4 7.8 27.5 5.6 7.1 1.8 5.1 3 2 3 6 6 5 0 Fibrinogen alpha/beta chain family FH2 PF02181.23 gi|257387803|ref|YP_003177576.1| - 3.5 6.6 16.3 0.74 8.9 1.6 3.7 2 2 2 4 4 4 0 Formin Homology 2 Domain CREPT PF16566.5 gi|257387803|ref|YP_003177576.1| - 3.6 7.7 20.1 0.56 10.4 2.9 4.1 2 1 3 5 5 5 0 Cell-cycle alteration and expression-elevated protein in tumour ING PF12998.7 gi|257387803|ref|YP_003177576.1| - 3.7 8.2 8.3 9.9 6.8 0.3 3.5 2 1 1 3 3 3 0 Inhibitor of growth proteins N-terminal histone-binding Snapin_Pallidin PF14712.6 gi|257387803|ref|YP_003177576.1| - 3.9 7.9 17.6 5.8 7.4 3.4 4.5 3 2 0 3 3 3 0 Snapin/Pallidin Spc7 PF08317.11 gi|257387803|ref|YP_003177576.1| - 4.8 6.0 40.2 0.42 9.5 7.5 3.4 1 1 3 4 4 4 0 Spc7 kinetochore protein DUF16 PF01519.16 gi|257387803|ref|YP_003177576.1| - 6.9 7.2 26.7 0.67 10.5 4.8 4.7 2 2 2 4 4 4 0 Protein of unknown function DUF16 SKA1 PF07160.12 gi|257387803|ref|YP_003177576.1| - 7.9 6.2 24.1 15 5.3 6.4 3.3 2 2 0 2 2 2 0 Spindle and kinetochore-associated protein 1 BshC PF10079.9 gi|257387803|ref|YP_003177576.1| - 8.4 5.0 19.8 0.6 8.8 4.2 2.9 2 1 0 3 3 3 0 Bacillithiol biosynthesis BshC BLOC1_2 PF10046.9 gi|257387803|ref|YP_003177576.1| - 9.6 6.6 28.3 3 8.2 0.8 5.6 3 2 2 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 COX15-CtaA PF02628.15 gi|257387804|ref|YP_003177577.1| - 4.2e-11 42.5 25.9 4.5e-08 32.5 18.2 2.8 1 1 1 2 2 2 2 Cytochrome oxidase assembly protein DUF420 PF04238.12 gi|257387804|ref|YP_003177577.1| - 0.035 14.4 0.7 0.035 14.4 0.7 2.5 2 1 1 3 3 3 0 Protein of unknown function (DUF420) DUF1772 PF08592.11 gi|257387804|ref|YP_003177577.1| - 0.038 14.3 0.7 0.038 14.3 0.7 4.1 1 1 2 4 4 4 0 Domain of unknown function (DUF1772) PsbX PF06596.11 gi|257387804|ref|YP_003177577.1| - 0.21 11.6 0.3 0.21 11.6 0.3 3.8 4 0 0 4 4 4 0 Photosystem II reaction centre X protein (PsbX) AAA PF00004.29 gi|257387805|ref|YP_003177578.1| - 4e-11 43.5 0.1 1.5e-10 41.6 0.0 2.0 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|257387805|ref|YP_003177578.1| - 1.3e-05 25.0 0.0 2.7e-05 24.0 0.0 1.6 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|257387805|ref|YP_003177578.1| - 6.4e-05 23.4 0.0 0.001 19.5 0.0 2.6 2 1 1 3 3 3 1 AAA ATPase domain AAA_22 PF13401.6 gi|257387805|ref|YP_003177578.1| - 0.00019 21.7 0.0 0.054 13.8 0.0 2.8 2 1 0 2 2 2 1 AAA domain IstB_IS21 PF01695.17 gi|257387805|ref|YP_003177578.1| - 0.0024 17.6 0.0 0.0043 16.8 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_assoc_2 PF16193.5 gi|257387805|ref|YP_003177578.1| - 0.0024 18.2 0.2 0.0077 16.5 0.2 1.9 1 0 0 1 1 1 1 AAA C-terminal domain AAA_5 PF07728.14 gi|257387805|ref|YP_003177578.1| - 0.003 17.6 0.0 0.01 15.8 0.0 1.9 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_25 PF13481.6 gi|257387805|ref|YP_003177578.1| - 0.0055 16.3 1.5 0.07 12.7 0.0 2.9 2 1 1 3 3 3 1 AAA domain AAA_28 PF13521.6 gi|257387805|ref|YP_003177578.1| - 0.0068 16.7 0.0 0.019 15.2 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_2 PF07724.14 gi|257387805|ref|YP_003177578.1| - 0.0078 16.3 0.3 0.06 13.5 0.0 2.1 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) AAA_33 PF13671.6 gi|257387805|ref|YP_003177578.1| - 0.016 15.4 0.0 0.15 12.2 0.0 2.3 2 0 0 2 2 2 0 AAA domain DUF815 PF05673.13 gi|257387805|ref|YP_003177578.1| - 0.016 14.4 0.0 0.033 13.3 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF815) Bac_DnaA PF00308.18 gi|257387805|ref|YP_003177578.1| - 0.025 14.4 0.0 0.22 11.3 0.0 2.4 3 0 0 3 3 3 0 Bacterial dnaA protein AA_kinase PF00696.28 gi|257387805|ref|YP_003177578.1| - 0.025 14.2 0.7 0.079 12.5 0.1 2.0 2 0 0 2 2 2 0 Amino acid kinase family RNA_helicase PF00910.22 gi|257387805|ref|YP_003177578.1| - 0.03 14.7 0.0 0.097 13.1 0.0 1.8 1 1 0 1 1 1 0 RNA helicase AAA_14 PF13173.6 gi|257387805|ref|YP_003177578.1| - 0.031 14.3 0.0 0.072 13.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain Hydin_ADK PF17213.3 gi|257387805|ref|YP_003177578.1| - 0.034 14.4 1.3 0.04 14.2 0.1 1.8 2 0 0 2 2 2 0 Hydin Adenylate kinase-like domain NACHT PF05729.12 gi|257387805|ref|YP_003177578.1| - 0.039 13.9 0.0 0.15 12.0 0.0 2.0 2 0 0 2 2 2 0 NACHT domain Zeta_toxin PF06414.12 gi|257387805|ref|YP_003177578.1| - 0.047 13.0 0.0 0.09 12.0 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin HTH_29 PF13551.6 gi|257387805|ref|YP_003177578.1| - 0.05 13.6 0.6 4.9 7.3 0.0 2.9 3 0 0 3 3 2 0 Winged helix-turn helix Rad17 PF03215.15 gi|257387805|ref|YP_003177578.1| - 0.067 13.1 0.0 0.17 11.8 0.0 1.6 2 0 0 2 2 2 0 Rad17 P-loop domain RsgA_GTPase PF03193.16 gi|257387805|ref|YP_003177578.1| - 0.099 12.5 0.0 0.2 11.5 0.0 1.5 1 0 0 1 1 1 0 RsgA GTPase Mg_chelatase PF01078.21 gi|257387805|ref|YP_003177578.1| - 0.13 11.6 0.0 0.23 10.8 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI ResIII PF04851.15 gi|257387805|ref|YP_003177578.1| - 0.15 12.0 0.0 1.6 8.7 0.0 2.3 3 0 0 3 3 2 0 Type III restriction enzyme, res subunit AAA_3 PF07726.11 gi|257387805|ref|YP_003177578.1| - 0.16 11.8 0.0 0.28 11.1 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Peripla_BP_6 PF13458.6 gi|257387806|ref|YP_003177579.1| - 5.3e-48 164.4 4.0 6.4e-48 164.2 4.0 1.0 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.6 gi|257387806|ref|YP_003177579.1| - 3e-12 46.2 0.0 4.7e-07 29.1 0.0 2.2 2 0 0 2 2 2 2 Periplasmic binding protein domain ANF_receptor PF01094.28 gi|257387806|ref|YP_003177579.1| - 0.00057 19.1 0.1 0.008 15.3 0.0 2.1 2 0 0 2 2 2 1 Receptor family ligand binding region SlyX PF04102.12 gi|257387807|ref|YP_003177580.1| - 6.8e-05 23.4 7.1 0.00016 22.2 7.1 1.7 1 0 0 1 1 1 1 SlyX DUF16 PF01519.16 gi|257387807|ref|YP_003177580.1| - 0.023 15.2 1.0 0.038 14.5 1.0 1.3 1 0 0 1 1 1 0 Protein of unknown function DUF16 HSP70 PF00012.20 gi|257387807|ref|YP_003177580.1| - 0.029 12.6 1.1 0.04 12.1 1.1 1.1 1 0 0 1 1 1 0 Hsp70 protein UPF0242 PF06785.11 gi|257387807|ref|YP_003177580.1| - 0.035 14.2 0.7 0.051 13.7 0.7 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus Wbp11 PF09429.10 gi|257387807|ref|YP_003177580.1| - 0.035 14.5 2.1 0.075 13.4 2.1 1.5 1 0 0 1 1 1 0 WW domain binding protein 11 FliJ PF02050.16 gi|257387807|ref|YP_003177580.1| - 0.076 13.2 5.0 0.11 12.7 5.0 1.2 1 0 0 1 1 1 0 Flagellar FliJ protein COG2 PF06148.11 gi|257387807|ref|YP_003177580.1| - 0.11 12.6 0.8 0.16 12.0 0.8 1.3 1 0 0 1 1 1 0 COG (conserved oligomeric Golgi) complex component, COG2 TusA PF01206.17 gi|257387808|ref|YP_003177581.1| - 0.075 12.9 0.0 0.11 12.3 0.0 1.3 1 0 0 1 1 1 0 Sulfurtransferase TusA SNARE_assoc PF09335.11 gi|257387809|ref|YP_003177582.1| - 6.2e-17 62.2 8.1 6.2e-17 62.2 8.1 1.7 2 0 0 2 2 2 1 SNARE associated Golgi protein YbhQ PF11076.8 gi|257387809|ref|YP_003177582.1| - 0.13 12.3 0.7 1.2 9.2 0.1 2.2 2 0 0 2 2 2 0 Putative inner membrane protein YbhQ PAS_4 PF08448.10 gi|257387810|ref|YP_003177583.1| - 2.1e-49 166.4 15.6 3.8e-14 52.9 0.0 4.8 5 0 0 5 5 4 4 PAS fold PAS_9 PF13426.7 gi|257387810|ref|YP_003177583.1| - 3.6e-47 158.9 0.4 5.3e-14 52.3 0.1 4.3 4 0 0 4 4 4 4 PAS domain PAS_3 PF08447.12 gi|257387810|ref|YP_003177583.1| - 6.1e-46 154.6 1.4 1.1e-17 64.1 0.2 4.9 5 0 0 5 5 5 4 PAS fold PAS PF00989.25 gi|257387810|ref|YP_003177583.1| - 1.9e-39 134.1 1.1 3e-15 56.2 0.0 4.4 4 0 0 4 4 4 4 PAS fold HATPase_c PF02518.26 gi|257387810|ref|YP_003177583.1| - 3.3e-15 56.5 0.1 3.2e-14 53.4 0.1 2.4 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.7 gi|257387810|ref|YP_003177583.1| - 6e-15 54.9 5.9 0.00027 20.9 0.0 5.1 5 0 0 5 5 5 3 PAS domain HisKA PF00512.25 gi|257387810|ref|YP_003177583.1| - 2.4e-10 40.3 2.4 1.1e-08 35.0 0.8 3.8 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain Response_reg PF00072.24 gi|257387810|ref|YP_003177583.1| - 5.5e-09 36.2 0.3 2e-08 34.4 0.0 2.2 3 0 0 3 3 2 1 Response regulator receiver domain PAS_11 PF14598.6 gi|257387810|ref|YP_003177583.1| - 1e-05 25.6 0.0 4.8 7.3 0.0 4.3 4 0 0 4 4 4 2 PAS domain PAS_10 PF13596.6 gi|257387810|ref|YP_003177583.1| - 0.00094 19.7 0.1 0.25 12.0 0.1 3.8 4 0 0 4 4 4 1 PAS domain ZNRF_3_ecto PF18212.1 gi|257387810|ref|YP_003177583.1| - 0.029 14.4 0.0 9.4 6.3 0.0 3.1 3 0 0 3 3 3 0 ZNRF-3 Ectodomain Methyltransf_11 PF08241.12 gi|257387810|ref|YP_003177583.1| - 0.21 12.3 0.9 0.7 10.6 0.2 2.4 2 0 0 2 2 2 0 Methyltransferase domain Cohesin_HEAT PF12765.7 gi|257387810|ref|YP_003177583.1| - 0.25 11.7 1.6 0.76 10.1 0.4 2.4 2 0 0 2 2 2 0 HEAT repeat associated with sister chromatid cohesion Auto_anti-p27 PF06677.12 gi|257387811|ref|YP_003177584.1| - 0.08 13.1 4.8 0.1 12.7 4.8 1.2 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-Mss51 PF13824.6 gi|257387811|ref|YP_003177584.1| - 1.2 9.3 7.5 1.6 8.9 7.5 1.3 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Oxidored_molyb PF00174.19 gi|257387812|ref|YP_003177585.1| - 1.1e-37 129.3 0.0 1.7e-37 128.7 0.0 1.2 1 0 0 1 1 1 1 Oxidoreductase molybdopterin binding domain Mo-co_dimer PF03404.16 gi|257387812|ref|YP_003177585.1| - 1.1e-08 35.2 0.0 2.4e-08 34.1 0.0 1.5 1 0 0 1 1 1 1 Mo-co oxidoreductase dimerisation domain TPPK_C PF12555.8 gi|257387812|ref|YP_003177585.1| - 0.042 13.9 1.6 0.042 13.9 1.6 3.0 3 0 0 3 3 3 0 Thiamine pyrophosphokinase C terminal BNR PF02012.20 gi|257387812|ref|YP_003177585.1| - 0.19 11.8 0.6 0.48 10.6 0.6 1.7 1 0 0 1 1 1 0 BNR/Asp-box repeat PspA_IM30 PF04012.12 gi|257387813|ref|YP_003177586.1| - 1.5e-29 103.2 24.6 1.9e-29 102.8 24.6 1.1 1 0 0 1 1 1 1 PspA/IM30 family Spc7 PF08317.11 gi|257387813|ref|YP_003177586.1| - 9.6e-05 21.4 12.8 9.6e-05 21.4 12.8 2.3 1 1 1 2 2 2 1 Spc7 kinetochore protein TACC_C PF05010.14 gi|257387813|ref|YP_003177586.1| - 0.00017 21.5 14.9 0.00017 21.5 14.9 2.0 1 1 1 2 2 2 1 Transforming acidic coiled-coil-containing protein (TACC), C-terminal Snf7 PF03357.21 gi|257387813|ref|YP_003177586.1| - 0.0055 16.3 23.3 1.3 8.6 23.3 3.1 1 1 0 1 1 1 1 Snf7 Baculo_PEP_C PF04513.12 gi|257387813|ref|YP_003177586.1| - 0.0086 16.1 4.7 0.39 10.8 0.0 3.5 1 1 2 3 3 3 1 Baculovirus polyhedron envelope protein, PEP, C terminus COG6 PF06419.11 gi|257387813|ref|YP_003177586.1| - 0.011 14.0 8.7 0.16 10.1 0.1 3.1 1 1 2 3 3 3 0 Conserved oligomeric complex COG6 COG2 PF06148.11 gi|257387813|ref|YP_003177586.1| - 0.013 15.6 11.7 0.038 14.1 0.7 3.4 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 COG5 PF10392.9 gi|257387813|ref|YP_003177586.1| - 0.013 15.6 14.4 0.09 12.9 7.3 3.4 1 1 2 3 3 3 0 Golgi transport complex subunit 5 HTH_28 PF13518.6 gi|257387813|ref|YP_003177586.1| - 0.016 15.3 0.5 1.6 8.9 0.0 2.9 1 1 1 2 2 2 0 Helix-turn-helix domain YabA PF06156.13 gi|257387813|ref|YP_003177586.1| - 0.016 15.8 16.2 0.02 15.5 3.8 3.4 1 1 2 3 3 3 0 Initiation control protein YabA Laminin_II PF06009.12 gi|257387813|ref|YP_003177586.1| - 0.024 14.7 11.3 1 9.3 0.4 3.8 1 1 2 3 3 3 0 Laminin Domain II DUF1664 PF07889.12 gi|257387813|ref|YP_003177586.1| - 0.025 14.6 10.5 0.98 9.5 1.0 3.9 2 1 2 4 4 4 0 Protein of unknown function (DUF1664) DASH_Dam1 PF08653.10 gi|257387813|ref|YP_003177586.1| - 0.049 13.4 1.9 7.3 6.5 0.1 3.7 3 2 2 5 5 5 0 DASH complex subunit Dam1 MamL-1 PF09596.10 gi|257387813|ref|YP_003177586.1| - 0.066 13.5 0.4 0.066 13.5 0.4 3.3 4 0 0 4 4 2 0 MamL-1 domain DUF724 PF05266.14 gi|257387813|ref|YP_003177586.1| - 0.081 12.7 14.1 0.39 10.5 3.5 3.0 2 1 1 3 3 3 0 Protein of unknown function (DUF724) DUF4665 PF15679.5 gi|257387813|ref|YP_003177586.1| - 0.083 13.5 1.2 0.49 11.0 0.1 2.7 2 1 1 4 4 3 0 Domain of unknown function (DUF4665) DASH_Dad4 PF08650.10 gi|257387813|ref|YP_003177586.1| - 0.11 12.4 0.1 2.2 8.3 0.1 2.7 2 1 0 2 2 2 0 DASH complex subunit Dad4 AAA_13 PF13166.6 gi|257387813|ref|YP_003177586.1| - 0.14 10.8 12.2 0.4 9.3 12.1 1.7 1 1 0 1 1 1 0 AAA domain FTA4 PF13093.6 gi|257387813|ref|YP_003177586.1| - 0.29 11.0 19.5 1.4 8.7 4.4 2.6 1 1 1 2 2 2 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 DivIC PF04977.15 gi|257387813|ref|YP_003177586.1| - 0.38 10.6 24.9 0.15 11.9 1.1 4.7 3 1 0 4 4 4 0 Septum formation initiator Nmad5 PF18757.1 gi|257387813|ref|YP_003177586.1| - 0.78 9.9 9.1 0.89 9.7 7.3 2.1 1 1 0 1 1 1 0 Nucleotide modification associated domain 5 FapA PF03961.13 gi|257387813|ref|YP_003177586.1| - 0.78 8.3 14.7 0.25 9.9 8.1 2.1 1 1 1 2 2 2 0 Flagellar Assembly Protein A DUF2089 PF09862.9 gi|257387813|ref|YP_003177586.1| - 0.8 9.8 7.3 1.1 9.3 0.8 3.3 3 1 0 3 3 3 0 Protein of unknown function (DUF2089) DUF5082 PF16888.5 gi|257387813|ref|YP_003177586.1| - 0.81 10.0 18.9 1.2 9.4 4.4 3.7 1 1 2 3 3 3 0 Domain of unknown function (DUF5082) FlaC_arch PF05377.11 gi|257387813|ref|YP_003177586.1| - 0.89 10.0 3.3 5.4 7.5 0.1 3.6 3 1 0 3 3 3 0 Flagella accessory protein C (FlaC) IKBKB_SDD PF18397.1 gi|257387813|ref|YP_003177586.1| - 0.91 8.8 9.0 0.43 9.8 5.5 1.9 1 1 1 2 2 2 0 IQBAL scaffold dimerization domain DUF2894 PF11445.8 gi|257387813|ref|YP_003177586.1| - 1 9.8 18.3 1.2 9.6 12.1 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF2894) Mod_r PF07200.13 gi|257387813|ref|YP_003177586.1| - 1.1 9.4 21.0 0.063 13.4 7.1 3.1 1 1 2 3 3 3 0 Modifier of rudimentary (Mod(r)) protein Prominin PF05478.11 gi|257387813|ref|YP_003177586.1| - 1.5 6.7 4.1 2 6.3 3.9 1.4 1 1 0 1 1 1 0 Prominin DUF3037 PF11236.8 gi|257387813|ref|YP_003177586.1| - 1.8 9.0 10.5 6 7.3 3.2 2.6 2 1 0 2 2 2 0 Protein of unknown function (DUF3037) RmuC PF02646.16 gi|257387813|ref|YP_003177586.1| - 3 6.9 19.4 2.5 7.1 0.1 3.8 1 1 3 4 4 4 0 RmuC family Syntaxin-6_N PF09177.11 gi|257387813|ref|YP_003177586.1| - 3.1 8.4 12.3 2.5 8.7 1.7 3.6 1 1 2 3 3 3 0 Syntaxin 6, N-terminal Ccdc124 PF06244.12 gi|257387813|ref|YP_003177586.1| - 5.8 7.5 19.3 0.23 12.0 4.2 3.1 1 1 2 3 3 3 0 Coiled-coil domain-containing protein 124 /Oxs1 DUF4407 PF14362.6 gi|257387813|ref|YP_003177586.1| - 5.9 6.1 30.0 1.2 8.5 15.7 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) YlqD PF11068.8 gi|257387813|ref|YP_003177586.1| - 6.5 7.1 23.8 3.6 8.0 12.9 3.4 1 1 2 3 3 3 0 YlqD protein PIN_8 PF18476.1 gi|257387813|ref|YP_003177586.1| - 7 6.4 14.7 7.5 6.3 7.5 2.1 1 1 1 2 2 2 0 PIN like domain Allexi_40kDa PF05549.11 gi|257387813|ref|YP_003177586.1| - 7.1 6.1 7.2 5.9 6.3 3.5 2.4 1 1 1 2 2 2 0 Allexivirus 40kDa protein Fzo_mitofusin PF04799.13 gi|257387813|ref|YP_003177586.1| - 7.8 6.0 13.9 6.4 6.3 3.5 3.5 1 1 3 4 4 4 0 fzo-like conserved region UPF0242 PF06785.11 gi|257387813|ref|YP_003177586.1| - 9.8 6.2 25.0 5.4 7.1 14.0 2.5 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus Ribonuc_red_lgC PF02867.15 gi|257387814|ref|YP_003177587.1| - 2.7e-152 508.0 0.0 3.4e-152 507.7 0.0 1.1 1 0 0 1 1 1 1 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.21 gi|257387814|ref|YP_003177587.1| - 5.4e-23 80.8 0.0 2.2e-22 78.8 0.0 2.1 2 0 0 2 2 2 1 Ribonucleotide reductase, all-alpha domain Fzo_mitofusin PF04799.13 gi|257387815|ref|YP_003177588.1| - 0.0066 16.0 4.1 0.0075 15.8 4.1 1.0 1 0 0 1 1 1 1 fzo-like conserved region PAP2 PF01569.21 gi|257387815|ref|YP_003177588.1| - 1.7 8.4 7.3 1.7 8.4 7.3 1.1 1 0 0 1 1 1 0 PAP2 superfamily GATase PF00117.28 gi|257387816|ref|YP_003177589.1| - 1.7e-43 148.6 0.0 2.2e-43 148.3 0.0 1.0 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|257387816|ref|YP_003177589.1| - 1.6e-08 34.5 0.0 1e-07 32.0 0.0 2.0 1 1 0 1 1 1 1 Peptidase C26 Chorismate_bind PF00425.18 gi|257387817|ref|YP_003177590.1| - 8.6e-90 300.8 0.0 1.4e-89 300.1 0.0 1.3 1 0 0 1 1 1 1 chorismate binding enzyme Anth_synt_I_N PF04715.13 gi|257387817|ref|YP_003177590.1| - 7.4e-17 61.9 0.2 1.4e-14 54.5 0.0 3.4 2 2 0 2 2 2 1 Anthranilate synthase component I, N terminal region PRAI PF00697.22 gi|257387818|ref|YP_003177591.1| - 1.7e-37 129.1 1.2 2e-37 128.9 1.2 1.0 1 0 0 1 1 1 1 N-(5'phosphoribosyl)anthranilate (PRA) isomerase NMO PF03060.15 gi|257387818|ref|YP_003177591.1| - 0.0014 18.1 2.4 0.0014 18.1 2.4 2.0 1 1 0 2 2 2 1 Nitronate monooxygenase NIT PF08376.10 gi|257387818|ref|YP_003177591.1| - 0.012 16.0 0.4 0.012 16.0 0.4 1.5 2 0 0 2 2 2 0 Nitrate and nitrite sensing TMP-TENI PF02581.17 gi|257387818|ref|YP_003177591.1| - 0.015 14.7 0.6 0.074 12.4 0.1 2.3 2 1 0 2 2 2 0 Thiamine monophosphate synthase G3P_antiterm PF04309.12 gi|257387818|ref|YP_003177591.1| - 0.16 11.3 1.1 0.86 9.0 0.0 2.5 4 0 0 4 4 4 0 Glycerol-3-phosphate responsive antiterminator Glycos_transf_3 PF00591.21 gi|257387819|ref|YP_003177592.1| - 4e-98 328.0 3.2 5.7e-98 327.5 3.2 1.2 1 0 0 1 1 1 1 Glycosyl transferase family, a/b domain Glycos_trans_3N PF02885.17 gi|257387819|ref|YP_003177592.1| - 5.7e-17 61.3 6.1 6.2e-17 61.2 3.9 2.1 2 0 0 2 2 2 1 Glycosyl transferase family, helical bundle domain DUF2717 PF10911.8 gi|257387819|ref|YP_003177592.1| - 0.013 15.2 0.0 0.036 13.8 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF2717) Mnd1 PF03962.15 gi|257387820|ref|YP_003177593.1| - 0.16 12.3 0.6 26 5.2 0.0 2.8 2 1 1 3 3 3 0 Mnd1 HTH domain HTH_10 PF04967.12 gi|257387821|ref|YP_003177594.1| - 8.1e-14 51.2 0.1 1.2e-13 50.6 0.1 1.3 1 0 0 1 1 1 1 HTH DNA binding domain MarR_2 PF12802.7 gi|257387821|ref|YP_003177594.1| - 0.00062 19.6 0.1 0.0015 18.4 0.1 1.7 1 0 0 1 1 1 1 MarR family Sigma70_r4 PF04545.16 gi|257387821|ref|YP_003177594.1| - 0.0024 17.3 0.2 0.005 16.3 0.2 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_24 PF13412.6 gi|257387821|ref|YP_003177594.1| - 0.0088 15.6 0.0 0.016 14.7 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_30 PF13556.6 gi|257387821|ref|YP_003177594.1| - 0.0096 15.7 0.0 0.028 14.2 0.0 1.7 2 0 0 2 2 2 1 PucR C-terminal helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|257387821|ref|YP_003177594.1| - 0.0098 15.7 0.1 0.023 14.5 0.1 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|257387821|ref|YP_003177594.1| - 0.015 14.9 0.0 0.027 14.1 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_20 PF12840.7 gi|257387821|ref|YP_003177594.1| - 0.024 14.7 0.0 0.061 13.4 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_38 PF13936.6 gi|257387821|ref|YP_003177594.1| - 0.029 14.1 0.1 0.099 12.4 0.1 1.9 1 1 0 1 1 1 0 Helix-turn-helix domain TrmB PF01978.19 gi|257387821|ref|YP_003177594.1| - 0.063 13.2 0.0 0.12 12.2 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|257387821|ref|YP_003177594.1| - 0.1 12.4 0.0 0.25 11.2 0.0 1.6 1 0 0 1 1 1 0 IclR helix-turn-helix domain Dabb PF07876.12 gi|257387822|ref|YP_003177595.1| - 0.053 14.2 0.0 0.2 12.3 0.0 1.8 1 1 1 2 2 2 0 Stress responsive A/B Barrel Domain CBS PF00571.28 gi|257387824|ref|YP_003177597.1| - 7.2e-36 122.4 14.5 1.7e-12 47.6 2.0 4.4 4 0 0 4 4 4 4 CBS domain Ribosomal_S30AE PF02482.19 gi|257387824|ref|YP_003177597.1| - 0.028 15.2 0.1 0.12 13.2 0.1 2.2 1 0 0 1 1 1 0 Sigma 54 modulation protein / S30EA ribosomal protein DUF987 PF06174.11 gi|257387825|ref|YP_003177598.1| - 0.016 15.2 0.0 0.025 14.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF987) DUF4762 PF15959.5 gi|257387825|ref|YP_003177598.1| - 0.031 14.2 0.3 0.053 13.5 0.3 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4762) Trp_oprn_chp PF09534.10 gi|257387825|ref|YP_003177598.1| - 2 8.2 7.1 14 5.4 7.1 2.0 1 1 0 1 1 1 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) PIN PF01850.21 gi|257387826|ref|YP_003177599.1| - 3.8e-05 24.2 0.0 4.6e-05 23.9 0.0 1.1 1 0 0 1 1 1 1 PIN domain La_HTH_kDCL PF18177.1 gi|257387826|ref|YP_003177599.1| - 0.16 12.3 0.0 0.22 11.9 0.0 1.2 1 0 0 1 1 1 0 La HTH in kinetoplastid DICER domain VAPB_antitox PF02697.14 gi|257387827|ref|YP_003177600.1| - 8.7e-12 45.6 1.9 1e-11 45.4 1.9 1.1 1 0 0 1 1 1 1 Putative antitoxin AAA PF00004.29 gi|257387828|ref|YP_003177601.1| - 2.9e-100 331.9 0.0 1.4e-49 167.9 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) CDC48_N PF02359.18 gi|257387828|ref|YP_003177601.1| - 6.7e-31 106.3 0.0 4.9e-30 103.5 0.1 2.4 3 0 0 3 3 1 1 Cell division protein 48 (CDC48), N-terminal domain AAA_lid_3 PF17862.1 gi|257387828|ref|YP_003177601.1| - 3.5e-28 97.1 2.0 8.5e-14 51.1 0.5 2.5 2 0 0 2 2 2 2 AAA+ lid domain CDC48_2 PF02933.17 gi|257387828|ref|YP_003177601.1| - 3.2e-16 58.8 0.1 2.3e-15 56.1 0.1 2.3 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), domain 2 RuvB_N PF05496.12 gi|257387828|ref|YP_003177601.1| - 1.5e-15 57.3 0.0 8.2e-07 28.9 0.0 3.2 3 0 0 3 3 3 2 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|257387828|ref|YP_003177601.1| - 2.1e-14 54.3 0.6 8.7e-06 26.2 0.2 4.2 2 2 1 3 3 3 2 AAA ATPase domain AAA_2 PF07724.14 gi|257387828|ref|YP_003177601.1| - 5.6e-13 49.3 0.0 1.3e-05 25.4 0.0 2.6 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_5 PF07728.14 gi|257387828|ref|YP_003177601.1| - 2.1e-12 47.2 1.8 0.00017 21.6 0.0 4.2 3 2 0 3 3 2 2 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|257387828|ref|YP_003177601.1| - 8.1e-12 45.6 0.5 0.0094 16.2 0.0 4.4 2 2 1 4 4 4 2 AAA domain AAA_33 PF13671.6 gi|257387828|ref|YP_003177601.1| - 9.7e-11 42.0 0.0 6.5e-05 23.1 0.0 2.6 2 0 0 2 2 2 2 AAA domain TIP49 PF06068.13 gi|257387828|ref|YP_003177601.1| - 1.1e-10 41.3 0.0 0.00039 19.7 0.0 3.3 3 0 0 3 3 3 2 TIP49 P-loop domain IstB_IS21 PF01695.17 gi|257387828|ref|YP_003177601.1| - 1.8e-07 31.1 0.0 0.017 14.9 0.0 2.5 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_14 PF13173.6 gi|257387828|ref|YP_003177601.1| - 3.5e-07 30.3 0.0 0.007 16.4 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_18 PF13238.6 gi|257387828|ref|YP_003177601.1| - 5.1e-07 30.3 0.1 0.071 13.7 0.0 3.2 3 0 0 3 3 2 2 AAA domain AAA_25 PF13481.6 gi|257387828|ref|YP_003177601.1| - 6.4e-07 29.1 0.4 1.4 8.4 0.0 4.3 4 0 0 4 4 4 1 AAA domain Mg_chelatase PF01078.21 gi|257387828|ref|YP_003177601.1| - 1e-06 28.3 0.1 0.054 12.9 0.0 2.6 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI RNA_helicase PF00910.22 gi|257387828|ref|YP_003177601.1| - 1.3e-06 28.8 0.0 0.073 13.5 0.0 2.6 2 0 0 2 2 2 2 RNA helicase AAA_7 PF12775.7 gi|257387828|ref|YP_003177601.1| - 3.5e-06 26.6 0.0 0.077 12.5 0.0 2.5 2 0 0 2 2 2 2 P-loop containing dynein motor region Sigma54_activat PF00158.26 gi|257387828|ref|YP_003177601.1| - 6.1e-06 26.1 0.1 0.16 11.6 0.0 3.2 3 1 0 3 3 2 2 Sigma-54 interaction domain AAA_3 PF07726.11 gi|257387828|ref|YP_003177601.1| - 6.1e-06 26.1 0.0 0.079 12.8 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 gi|257387828|ref|YP_003177601.1| - 7.3e-06 26.3 0.2 0.034 14.4 0.0 3.0 3 0 0 3 3 2 2 AAA domain ATPase PF06745.13 gi|257387828|ref|YP_003177601.1| - 1.2e-05 24.8 1.0 0.45 9.8 0.0 3.7 4 0 0 4 4 3 2 KaiC TsaE PF02367.17 gi|257387828|ref|YP_003177601.1| - 2.1e-05 24.5 0.0 0.17 11.9 0.0 2.5 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE DUF815 PF05673.13 gi|257387828|ref|YP_003177601.1| - 2.8e-05 23.4 0.0 0.25 10.5 0.0 2.4 2 0 0 2 2 2 2 Protein of unknown function (DUF815) ABC_tran PF00005.27 gi|257387828|ref|YP_003177601.1| - 4.7e-05 23.9 0.0 0.53 10.8 0.0 2.6 2 0 0 2 2 2 2 ABC transporter ATPase_2 PF01637.18 gi|257387828|ref|YP_003177601.1| - 5.5e-05 23.2 0.0 0.9 9.4 0.0 3.8 2 2 1 3 3 3 1 ATPase domain predominantly from Archaea AAA_24 PF13479.6 gi|257387828|ref|YP_003177601.1| - 5.6e-05 22.9 0.0 0.22 11.2 0.0 2.5 2 0 0 2 2 2 2 AAA domain AAA_30 PF13604.6 gi|257387828|ref|YP_003177601.1| - 5.8e-05 22.9 0.5 0.51 10.0 0.0 3.0 3 0 0 3 3 2 2 AAA domain PhoH PF02562.16 gi|257387828|ref|YP_003177601.1| - 6.3e-05 22.5 0.3 0.43 10.0 0.0 3.1 3 0 0 3 3 3 2 PhoH-like protein NB-ARC PF00931.22 gi|257387828|ref|YP_003177601.1| - 8.3e-05 21.9 0.0 0.12 11.5 0.0 2.6 3 0 0 3 3 2 2 NB-ARC domain AAA_11 PF13086.6 gi|257387828|ref|YP_003177601.1| - 9.1e-05 22.4 0.0 0.3 10.8 0.0 2.4 2 0 0 2 2 2 2 AAA domain Parvo_NS1 PF01057.17 gi|257387828|ref|YP_003177601.1| - 0.0003 20.0 0.0 0.37 9.9 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 NACHT PF05729.12 gi|257387828|ref|YP_003177601.1| - 0.00034 20.6 0.2 0.56 10.1 0.0 3.3 4 0 0 4 4 2 1 NACHT domain DUF2075 PF09848.9 gi|257387828|ref|YP_003177601.1| - 0.00038 19.8 0.0 0.38 9.9 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) AAA_17 PF13207.6 gi|257387828|ref|YP_003177601.1| - 0.00074 20.0 0.0 1.5 9.2 0.0 3.3 3 0 0 3 3 3 1 AAA domain Zeta_toxin PF06414.12 gi|257387828|ref|YP_003177601.1| - 0.00091 18.6 0.2 1.5 8.0 0.0 2.5 2 0 0 2 2 2 2 Zeta toxin Vps4_C PF09336.10 gi|257387828|ref|YP_003177601.1| - 0.0012 18.7 1.0 0.17 11.9 0.0 3.0 3 0 0 3 3 2 1 Vps4 C terminal oligomerisation domain AAA_19 PF13245.6 gi|257387828|ref|YP_003177601.1| - 0.0013 19.1 0.4 2.8 8.3 0.0 2.8 2 1 1 3 3 2 1 AAA domain Sigma54_activ_2 PF14532.6 gi|257387828|ref|YP_003177601.1| - 0.002 18.3 0.0 3.2 7.9 0.0 2.6 2 0 0 2 2 2 0 Sigma-54 interaction domain IPT PF01745.16 gi|257387828|ref|YP_003177601.1| - 0.002 17.6 0.6 0.67 9.3 0.0 2.7 3 0 0 3 3 3 1 Isopentenyl transferase NTPase_1 PF03266.15 gi|257387828|ref|YP_003177601.1| - 0.0021 18.0 0.2 3.6 7.5 0.0 3.2 2 1 1 3 3 2 0 NTPase Bac_DnaA PF00308.18 gi|257387828|ref|YP_003177601.1| - 0.0055 16.6 0.1 5.6 6.7 0.0 2.9 3 0 0 3 3 3 0 Bacterial dnaA protein Cytidylate_kin PF02224.18 gi|257387828|ref|YP_003177601.1| - 0.013 15.3 0.1 4.4 7.0 0.0 2.5 2 0 0 2 2 2 0 Cytidylate kinase CPT PF07931.12 gi|257387828|ref|YP_003177601.1| - 0.024 14.5 0.0 3.8 7.3 0.0 2.4 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein Viral_helicase1 PF01443.18 gi|257387828|ref|YP_003177601.1| - 0.025 14.3 0.0 1.7 8.3 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase AFG1_ATPase PF03969.16 gi|257387828|ref|YP_003177601.1| - 0.03 13.2 0.0 2 7.2 0.0 2.2 2 0 0 2 2 2 0 AFG1-like ATPase ResIII PF04851.15 gi|257387828|ref|YP_003177601.1| - 0.031 14.3 0.0 9.2 6.2 0.0 2.7 2 0 0 2 2 2 0 Type III restriction enzyme, res subunit KAP_NTPase PF07693.14 gi|257387828|ref|YP_003177601.1| - 0.034 13.4 0.1 11 5.1 0.1 3.1 2 2 1 4 4 4 0 KAP family P-loop domain Hydin_ADK PF17213.3 gi|257387828|ref|YP_003177601.1| - 0.05 13.9 0.0 4.3 7.6 0.0 2.3 2 0 0 2 2 2 0 Hydin Adenylate kinase-like domain Zot PF05707.12 gi|257387828|ref|YP_003177601.1| - 0.063 12.9 0.0 5.1 6.7 0.0 2.6 2 0 0 2 2 2 0 Zonular occludens toxin (Zot) Torsin PF06309.11 gi|257387828|ref|YP_003177601.1| - 0.065 13.3 0.0 4.6 7.4 0.0 2.4 2 0 0 2 2 2 0 Torsin Rad17 PF03215.15 gi|257387828|ref|YP_003177601.1| - 0.066 13.1 0.0 15 5.5 0.0 2.6 2 1 0 2 2 2 0 Rad17 P-loop domain SKI PF01202.22 gi|257387828|ref|YP_003177601.1| - 0.092 12.9 0.0 10 6.2 0.0 2.5 2 0 0 2 2 2 0 Shikimate kinase Cytidylate_kin2 PF13189.6 gi|257387828|ref|YP_003177601.1| - 0.12 12.5 0.0 8.1 6.5 0.0 2.5 2 0 0 2 2 2 0 Cytidylate kinase-like family AAA_29 PF13555.6 gi|257387828|ref|YP_003177601.1| - 0.16 11.8 0.0 25 4.7 0.0 2.4 2 0 0 2 2 2 0 P-loop containing region of AAA domain Phage_min_cap2 PF06152.11 gi|257387828|ref|YP_003177601.1| - 0.17 10.8 0.1 17 4.2 0.0 2.9 4 0 0 4 4 4 0 Phage minor capsid protein 2 Guanylate_kin PF00625.21 gi|257387828|ref|YP_003177601.1| - 0.21 11.2 0.2 76 2.9 0.0 3.4 3 1 1 4 4 3 0 Guanylate kinase Usp PF00582.26 gi|257387829|ref|YP_003177602.1| - 9.5e-07 29.4 0.1 1.2e-06 29.1 0.1 1.2 1 0 0 1 1 1 1 Universal stress protein family PP2C_2 PF13672.6 gi|257387829|ref|YP_003177602.1| - 0.065 12.9 0.0 0.082 12.5 0.0 1.1 1 0 0 1 1 1 0 Protein phosphatase 2C GGDEF_2 PF17853.1 gi|257387829|ref|YP_003177602.1| - 0.073 13.3 0.1 0.21 11.8 0.1 1.7 1 1 0 1 1 1 0 GGDEF-like domain DUF111 PF01969.17 gi|257387830|ref|YP_003177603.1| - 7.3e-129 430.1 0.8 8.3e-129 429.9 0.8 1.0 1 0 0 1 1 1 1 Protein of unknown function DUF111 SelP_N PF04592.14 gi|257387830|ref|YP_003177603.1| - 0.17 11.2 0.7 0.94 8.8 0.7 1.9 2 0 0 2 2 2 0 Selenoprotein P, N terminal region DUF460 PF04312.13 gi|257387832|ref|YP_003177605.1| - 0.047 13.4 1.5 0.084 12.6 0.3 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF460) bPH_6 PF10756.9 gi|257387833|ref|YP_003177606.1| - 0.01 15.9 0.1 0.03 14.4 0.1 1.9 1 0 0 1 1 1 0 Bacterial PH domain PGG PF13962.6 gi|257387833|ref|YP_003177606.1| - 0.072 12.9 0.3 0.072 12.9 0.3 2.1 2 1 0 2 2 2 0 Domain of unknown function Rad51 PF08423.11 gi|257387834|ref|YP_003177607.1| - 5.3e-27 94.7 0.0 7.1e-27 94.3 0.0 1.1 1 0 0 1 1 1 1 Rad51 AAA_25 PF13481.6 gi|257387834|ref|YP_003177607.1| - 7.3e-11 42.0 1.1 1.1e-10 41.4 1.1 1.2 1 0 0 1 1 1 1 AAA domain RecA PF00154.21 gi|257387834|ref|YP_003177607.1| - 8.1e-10 38.6 3.1 2.2e-09 37.2 2.9 1.7 1 1 0 1 1 1 1 recA bacterial DNA recombination protein ATPase PF06745.13 gi|257387834|ref|YP_003177607.1| - 9.5e-09 34.9 0.0 3.1e-08 33.3 0.0 1.8 1 1 0 1 1 1 1 KaiC AAA_24 PF13479.6 gi|257387834|ref|YP_003177607.1| - 1.2e-08 34.9 0.0 1.8e-08 34.3 0.0 1.5 1 1 0 1 1 1 1 AAA domain Zot PF05707.12 gi|257387834|ref|YP_003177607.1| - 0.00031 20.4 0.0 0.00037 20.2 0.0 1.1 1 0 0 1 1 1 1 Zonular occludens toxin (Zot) DnaB_C PF03796.15 gi|257387834|ref|YP_003177607.1| - 0.0026 17.1 0.0 0.0035 16.7 0.0 1.4 1 1 0 1 1 1 1 DnaB-like helicase C terminal domain IstB_IS21 PF01695.17 gi|257387834|ref|YP_003177607.1| - 0.0036 17.0 0.2 0.021 14.6 0.0 1.9 1 1 1 2 2 2 1 IstB-like ATP binding protein ATPase_2 PF01637.18 gi|257387834|ref|YP_003177607.1| - 0.13 12.2 0.0 0.17 11.8 0.0 1.2 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea PhoU PF01895.19 gi|257387835|ref|YP_003177608.1| - 9.4e-37 125.4 11.8 2.8e-20 72.6 0.3 2.2 2 0 0 2 2 2 2 PhoU domain Kre28 PF17097.5 gi|257387835|ref|YP_003177608.1| - 1.3 7.9 6.5 4.9 6.0 1.1 2.3 2 0 0 2 2 2 0 Spindle pole body component PhoU PF01895.19 gi|257387836|ref|YP_003177609.1| - 1.2e-36 125.1 10.3 1.4e-21 76.7 1.0 2.1 2 0 0 2 2 2 2 PhoU domain T7SS_ESX_EspC PF10824.8 gi|257387836|ref|YP_003177609.1| - 0.00016 22.1 4.2 0.037 14.5 0.2 2.5 2 0 0 2 2 2 2 Excreted virulence factor EspC, type VII ESX diderm FUSC PF04632.12 gi|257387836|ref|YP_003177609.1| - 0.55 8.7 4.0 0.84 8.1 3.8 1.4 1 1 1 2 2 2 0 Fusaric acid resistance protein family DUF883 PF05957.13 gi|257387836|ref|YP_003177609.1| - 3.2 8.4 6.9 9.2 6.9 0.3 3.1 3 1 0 3 3 3 0 Bacterial protein of unknown function (DUF883) HAD_2 PF13419.6 gi|257387837|ref|YP_003177610.1| - 6.2e-13 49.2 0.0 9.9e-13 48.6 0.0 1.4 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|257387837|ref|YP_003177610.1| - 1.1e-09 38.2 0.1 2.2e-09 37.2 0.1 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.26 gi|257387837|ref|YP_003177610.1| - 2.1e-09 38.0 0.2 3e-08 34.2 0.2 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase ABC_tran PF00005.27 gi|257387838|ref|YP_003177611.1| - 4.7e-30 104.9 0.0 7.1e-30 104.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|257387838|ref|YP_003177611.1| - 8e-11 42.3 0.0 5.4e-05 23.2 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|257387838|ref|YP_003177611.1| - 6.5e-09 35.5 1.0 1e-07 31.6 1.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|257387838|ref|YP_003177611.1| - 9.2e-06 25.6 0.0 0.0012 18.6 0.0 2.1 1 1 1 2 2 2 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|257387838|ref|YP_003177611.1| - 0.00083 19.3 0.0 0.0019 18.1 0.0 1.5 1 0 0 1 1 1 1 RsgA GTPase AAA_22 PF13401.6 gi|257387838|ref|YP_003177611.1| - 0.00083 19.6 0.0 0.002 18.4 0.0 1.7 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|257387838|ref|YP_003177611.1| - 0.0013 18.5 0.0 0.003 17.3 0.0 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_33 PF13671.6 gi|257387838|ref|YP_003177611.1| - 0.0075 16.4 0.0 0.013 15.7 0.0 1.6 2 1 0 2 2 1 1 AAA domain AAA_25 PF13481.6 gi|257387838|ref|YP_003177611.1| - 0.0091 15.6 0.3 0.17 11.4 0.0 2.3 2 1 0 2 2 2 1 AAA domain AAA_23 PF13476.6 gi|257387838|ref|YP_003177611.1| - 0.011 16.3 0.0 0.051 14.1 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|257387838|ref|YP_003177611.1| - 0.014 15.2 0.6 0.31 10.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.15 gi|257387838|ref|YP_003177611.1| - 0.019 14.9 0.0 0.035 14.0 0.0 1.4 1 0 0 1 1 1 0 Rad17 P-loop domain PRK PF00485.18 gi|257387838|ref|YP_003177611.1| - 0.019 14.7 0.0 0.15 11.8 0.0 2.1 1 1 1 2 2 2 0 Phosphoribulokinase / Uridine kinase family DeoRC PF00455.22 gi|257387838|ref|YP_003177611.1| - 0.027 14.4 0.0 0.043 13.8 0.0 1.3 1 0 0 1 1 1 0 DeoR C terminal sensor domain AAA_16 PF13191.6 gi|257387838|ref|YP_003177611.1| - 0.034 14.5 0.2 0.11 12.9 0.2 1.8 1 1 0 1 1 1 0 AAA ATPase domain ABC_ATPase PF09818.9 gi|257387838|ref|YP_003177611.1| - 0.037 12.8 0.2 2.9 6.6 0.0 2.1 2 0 0 2 2 2 0 Predicted ATPase of the ABC class KdpD PF02702.17 gi|257387838|ref|YP_003177611.1| - 0.062 12.8 0.2 0.098 12.1 0.2 1.3 1 0 0 1 1 1 0 Osmosensitive K+ channel His kinase sensor domain NB-ARC PF00931.22 gi|257387838|ref|YP_003177611.1| - 0.073 12.2 0.0 0.14 11.3 0.0 1.4 1 1 0 1 1 1 0 NB-ARC domain NACHT PF05729.12 gi|257387838|ref|YP_003177611.1| - 0.1 12.5 0.0 0.21 11.5 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA PF00004.29 gi|257387838|ref|YP_003177611.1| - 0.12 12.8 0.0 2.4 8.6 0.0 2.5 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 gi|257387838|ref|YP_003177611.1| - 0.13 12.8 0.0 0.26 11.9 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|257387838|ref|YP_003177611.1| - 0.14 11.9 0.0 0.42 10.3 0.0 1.8 2 1 0 2 2 2 0 AAA domain RNA_helicase PF00910.22 gi|257387838|ref|YP_003177611.1| - 0.14 12.5 0.0 0.38 11.2 0.0 1.7 2 0 0 2 2 1 0 RNA helicase ATPase_2 PF01637.18 gi|257387838|ref|YP_003177611.1| - 0.16 11.9 0.1 1.1 9.1 0.0 2.0 2 1 0 2 2 2 0 ATPase domain predominantly from Archaea Viral_helicase1 PF01443.18 gi|257387838|ref|YP_003177611.1| - 0.2 11.4 0.0 0.32 10.7 0.0 1.3 1 0 0 1 1 1 0 Viral (Superfamily 1) RNA helicase BPD_transp_1 PF00528.22 gi|257387839|ref|YP_003177612.1| - 7e-21 74.8 12.0 7e-21 74.8 12.0 4.5 2 2 3 5 5 5 2 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|257387840|ref|YP_003177613.1| - 1.1e-14 54.7 17.4 1.1e-14 54.7 17.4 2.2 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component PBP_like_2 PF12849.7 gi|257387841|ref|YP_003177614.1| - 8.9e-27 94.5 0.0 1.7e-26 93.6 0.0 1.3 1 0 0 1 1 1 1 PBP superfamily domain PBP_like PF12727.7 gi|257387841|ref|YP_003177614.1| - 1.1e-18 67.0 0.0 1.6e-18 66.5 0.0 1.3 1 0 0 1 1 1 1 PBP superfamily domain SBP_bac_1 PF01547.25 gi|257387841|ref|YP_003177614.1| - 0.005 16.8 0.1 0.22 11.4 0.0 2.2 2 0 0 2 2 2 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.9 gi|257387841|ref|YP_003177614.1| - 0.02 14.7 0.2 0.05 13.5 0.2 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence PhoU PF01895.19 gi|257387842|ref|YP_003177615.1| - 3.6e-23 81.8 6.0 1.1e-18 67.4 0.6 2.4 2 0 0 2 2 2 2 PhoU domain MazE_antitoxin PF04014.18 gi|257387842|ref|YP_003177615.1| - 6.6e-10 38.7 0.0 1.4e-09 37.7 0.0 1.6 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin Bep_C_terminal PF17841.1 gi|257387842|ref|YP_003177615.1| - 0.0042 17.3 0.1 0.014 15.6 0.0 2.0 1 1 1 2 2 2 1 BID domain of Bartonella effector protein (Bep) FAM184 PF15665.5 gi|257387842|ref|YP_003177615.1| - 0.0049 16.7 1.5 0.0082 16.0 1.5 1.3 1 0 0 1 1 1 1 Family with sequence similarity 184, A and B DUF948 PF06103.11 gi|257387842|ref|YP_003177615.1| - 0.027 14.7 5.2 9 6.6 1.6 3.3 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF948) HisKA_3 PF07730.13 gi|257387842|ref|YP_003177615.1| - 0.67 10.5 8.3 9.8 6.8 1.8 3.4 2 1 1 3 3 3 0 Histidine kinase PP_kinase_C_1 PF17941.1 gi|257387843|ref|YP_003177616.1| - 7.5e-69 230.6 0.2 2.3e-68 228.9 0.1 1.8 2 0 0 2 2 2 1 Polyphosphate kinase C-terminal domain 1 PP_kinase_C PF13090.6 gi|257387843|ref|YP_003177616.1| - 4.5e-61 205.3 0.0 9.1e-59 197.8 0.0 2.8 2 1 0 2 2 2 1 Polyphosphate kinase C-terminal domain 2 PP_kinase PF02503.17 gi|257387843|ref|YP_003177616.1| - 1e-57 195.0 2.4 1.7e-57 194.3 2.4 1.3 1 0 0 1 1 1 1 Polyphosphate kinase middle domain PP_kinase_N PF13089.6 gi|257387843|ref|YP_003177616.1| - 1.4e-35 121.8 0.0 3.9e-35 120.4 0.0 1.8 1 0 0 1 1 1 1 Polyphosphate kinase N-terminal domain PLDc_2 PF13091.6 gi|257387843|ref|YP_003177616.1| - 8.5e-12 45.1 0.0 5.3e-06 26.3 0.1 2.8 2 1 0 2 2 2 2 PLD-like domain DUF1062 PF06353.12 gi|257387843|ref|YP_003177616.1| - 0.022 15.6 0.2 0.058 14.2 0.2 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1062) MR_MLE_C PF13378.6 gi|257387843|ref|YP_003177616.1| - 0.12 11.9 2.1 0.15 11.6 0.1 2.1 2 0 0 2 2 2 0 Enolase C-terminal domain-like Metallophos PF00149.28 gi|257387844|ref|YP_003177617.1| - 3.9e-11 43.8 0.3 6.8e-11 43.1 0.2 1.4 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase Metallophos_2 PF12850.7 gi|257387844|ref|YP_003177617.1| - 2.2e-06 28.0 0.0 3e-06 27.5 0.0 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain DBD_HTH PF18430.1 gi|257387844|ref|YP_003177617.1| - 0.56 10.0 2.9 3.2 7.6 0.5 2.5 2 0 0 2 2 2 0 Putative DNA-binding domain Ribosomal_S8e PF01201.22 gi|257387845|ref|YP_003177618.1| - 4.5e-30 104.6 3.8 5.2e-30 104.4 3.8 1.1 1 0 0 1 1 1 1 Ribosomal protein S8e DUF2240 PF09999.9 gi|257387846|ref|YP_003177619.1| - 5.4e-52 175.2 0.3 6e-52 175.1 0.3 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2240) DUF99 PF01949.16 gi|257387846|ref|YP_003177619.1| - 0.023 14.1 0.1 0.041 13.3 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function DUF99 Phage_holin_3_6 PF07332.11 gi|257387848|ref|YP_003177621.1| - 0.061 13.4 16.4 0.055 13.5 5.6 2.3 2 0 0 2 2 2 0 Putative Actinobacterial Holin-X, holin superfamily III OMPdecase PF00215.24 gi|257387849|ref|YP_003177622.1| - 1.1e-32 113.4 0.0 1.4e-32 113.2 0.0 1.1 1 0 0 1 1 1 1 Orotidine 5'-phosphate decarboxylase / HUMPS family PQQ_2 PF13360.6 gi|257387851|ref|YP_003177624.1| - 4.1e-29 101.8 4.2 6.4e-16 58.7 0.4 3.1 2 2 1 3 3 3 3 PQQ-like domain PQQ_3 PF13570.6 gi|257387851|ref|YP_003177624.1| - 2e-14 53.5 8.0 0.00016 22.0 0.1 6.4 6 0 0 6 6 6 4 PQQ-like domain PQQ PF01011.21 gi|257387851|ref|YP_003177624.1| - 4e-12 45.4 0.1 0.2 11.6 0.0 5.6 5 0 0 5 5 5 3 PQQ enzyme repeat ANAPC4_WD40 PF12894.7 gi|257387851|ref|YP_003177624.1| - 0.027 14.8 0.0 0.4 11.0 0.0 2.9 4 0 0 4 4 4 0 Anaphase-promoting complex subunit 4 WD40 domain Prok-RING_2 PF14445.6 gi|257387852|ref|YP_003177625.1| - 0.11 12.7 6.8 0.15 12.2 6.8 1.2 1 0 0 1 1 1 0 Prokaryotic RING finger family 2 C5HCH PF17982.1 gi|257387852|ref|YP_003177625.1| - 0.14 12.4 6.8 0.14 12.4 5.0 1.8 1 1 1 2 2 2 0 NSD Cys-His rich domain Sgf11 PF08209.11 gi|257387852|ref|YP_003177625.1| - 0.19 11.3 0.2 0.19 11.3 0.2 2.3 3 0 0 3 3 3 0 Sgf11 (transcriptional regulation protein) zf-AN1 PF01428.16 gi|257387852|ref|YP_003177625.1| - 0.64 10.2 7.6 1.9 8.7 7.9 1.8 1 1 0 1 1 1 0 AN1-like Zinc finger RecR PF02132.15 gi|257387852|ref|YP_003177625.1| - 0.92 9.1 11.5 0.17 11.5 3.5 2.2 1 1 1 2 2 2 0 RecR protein DnaJ PF00226.31 gi|257387853|ref|YP_003177626.1| - 1.7e-12 47.3 0.0 2.5e-12 46.8 0.0 1.3 1 0 0 1 1 1 1 DnaJ domain RPT PF13446.6 gi|257387853|ref|YP_003177626.1| - 0.09 12.7 0.0 0.19 11.7 0.0 1.6 1 1 1 2 2 2 0 A repeated domain in UCH-protein PRA1 PF03208.19 gi|257387853|ref|YP_003177626.1| - 0.18 11.5 1.0 0.25 11.0 1.0 1.1 1 0 0 1 1 1 0 PRA1 family protein TetR_C_6 PF13977.6 gi|257387854|ref|YP_003177627.1| - 4.2e-21 75.3 3.3 4.2e-21 75.3 3.3 1.9 2 1 0 2 2 2 1 BetI-type transcriptional repressor, C-terminal TetR_N PF00440.23 gi|257387854|ref|YP_003177627.1| - 1.2e-09 37.8 1.2 2.1e-09 37.0 1.2 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_24 PF17932.1 gi|257387854|ref|YP_003177627.1| - 3.8e-07 30.4 0.1 1.2e-06 28.8 0.1 1.9 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_17 PF17922.1 gi|257387854|ref|YP_003177627.1| - 0.00022 21.3 0.0 0.00045 20.3 0.0 1.6 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_27 PF17935.1 gi|257387854|ref|YP_003177627.1| - 0.0013 18.8 1.2 0.004 17.2 0.1 2.5 2 2 1 3 3 3 1 Tetracyclin repressor-like, C-terminal domain Cupin_4 PF08007.12 gi|257387854|ref|YP_003177627.1| - 0.022 14.2 0.1 0.028 13.9 0.1 1.2 1 0 0 1 1 1 0 Cupin superfamily protein Sigma70_r4 PF04545.16 gi|257387854|ref|YP_003177627.1| - 0.025 14.1 0.0 0.048 13.2 0.0 1.5 1 0 0 1 1 1 0 Sigma-70, region 4 Autoind_bind PF03472.15 gi|257387854|ref|YP_003177627.1| - 0.057 12.9 0.3 0.19 11.2 0.0 2.0 2 1 0 2 2 2 0 Autoinducer binding domain ADPRTs_Tse2 PF18648.1 gi|257387854|ref|YP_003177627.1| - 0.064 13.3 0.1 0.14 12.2 0.1 1.5 1 0 0 1 1 1 0 Tse2 ADP-ribosyltransferase toxins Pox_P4B PF03292.14 gi|257387854|ref|YP_003177627.1| - 0.075 11.3 0.0 0.1 10.8 0.0 1.1 1 0 0 1 1 1 0 Poxvirus P4B major core protein TetR_C_31 PF17940.1 gi|257387854|ref|YP_003177627.1| - 0.16 12.2 9.0 0.18 12.0 6.2 2.6 2 1 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain TetR_C_15 PF17918.1 gi|257387854|ref|YP_003177627.1| - 0.25 12.1 9.2 0.07 13.9 4.4 2.4 2 2 0 2 2 2 0 Tetracyclin repressor-like, C-terminal domain TetR_C_6 PF13977.6 gi|257387855|ref|YP_003177628.1| - 6e-20 71.6 4.0 6e-20 71.6 4.0 2.0 2 0 0 2 2 2 1 BetI-type transcriptional repressor, C-terminal TetR_N PF00440.23 gi|257387855|ref|YP_003177628.1| - 9.4e-12 44.5 0.1 2.1e-11 43.4 0.1 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family TetR_C_24 PF17932.1 gi|257387855|ref|YP_003177628.1| - 0.00021 21.5 0.4 0.0052 17.0 0.1 2.8 3 1 0 3 3 3 1 Tetracyclin repressor-like, C-terminal domain TetR_C_25 PF17933.1 gi|257387855|ref|YP_003177628.1| - 0.00059 20.1 0.1 0.0014 19.0 0.1 1.5 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_11 PF16859.5 gi|257387855|ref|YP_003177628.1| - 0.0012 19.1 5.7 0.0029 17.9 5.4 1.9 1 1 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_27 PF17935.1 gi|257387855|ref|YP_003177628.1| - 0.0014 18.7 0.1 0.0034 17.4 0.1 1.8 1 0 0 1 1 1 1 Tetracyclin repressor-like, C-terminal domain TetR_C_29 PF17938.1 gi|257387855|ref|YP_003177628.1| - 0.019 15.1 0.0 0.031 14.3 0.0 1.5 1 0 0 1 1 1 0 Tetracyclin repressor-like, C-terminal domain FAM153 PF15722.5 gi|257387855|ref|YP_003177628.1| - 0.023 15.0 0.0 0.036 14.4 0.0 1.3 1 0 0 1 1 1 0 FAM153 family HTH_Tnp_1_2 PF13022.6 gi|257387855|ref|YP_003177628.1| - 0.099 12.8 0.1 0.19 11.9 0.1 1.4 1 0 0 1 1 1 0 Helix-turn-helix of insertion element transposase DUF2587 PF10759.9 gi|257387855|ref|YP_003177628.1| - 0.13 11.8 0.0 0.36 10.3 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF2587) MatE PF01554.18 gi|257387856|ref|YP_003177629.1| - 1.3e-60 203.7 41.7 8.2e-35 119.8 17.9 2.7 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.6 gi|257387856|ref|YP_003177629.1| - 0.021 14.9 45.0 0.03 14.4 17.8 4.8 3 1 1 4 4 4 0 Polysaccharide biosynthesis C-terminal domain CAAD PF14159.6 gi|257387856|ref|YP_003177629.1| - 0.2 11.5 3.7 1.2 9.0 3.7 2.4 1 0 0 1 1 1 0 CAAD domains of cyanobacterial aminoacyl-tRNA synthetase Hydrolase_3 PF08282.12 gi|257387857|ref|YP_003177630.1| - 5.5e-23 82.0 0.0 3.8e-15 56.3 0.0 2.0 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|257387857|ref|YP_003177630.1| - 4.2e-08 33.0 0.0 8.9e-07 28.7 0.0 2.1 2 0 0 2 2 2 1 Sucrose-6F-phosphate phosphohydrolase Hydrolase PF00702.26 gi|257387857|ref|YP_003177630.1| - 5e-07 30.2 0.7 8.3e-05 23.0 0.0 2.5 1 1 1 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|257387857|ref|YP_003177630.1| - 0.006 17.0 5.3 2.3 8.6 0.0 3.3 3 1 1 4 4 4 2 haloacid dehalogenase-like hydrolase SBF PF01758.16 gi|257387858|ref|YP_003177631.1| - 4.9e-51 173.2 10.3 4.9e-51 173.2 10.3 1.9 2 0 0 2 2 2 1 Sodium Bile acid symporter family LMWPc PF01451.21 gi|257387859|ref|YP_003177632.1| - 8.6e-29 100.7 0.6 2e-28 99.6 0.6 1.5 1 1 0 1 1 1 1 Low molecular weight phosphotyrosine protein phosphatase DUF3525 PF12039.8 gi|257387859|ref|YP_003177632.1| - 0.012 14.4 0.0 0.012 14.4 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3525) HTH_5 PF01022.20 gi|257387860|ref|YP_003177633.1| - 2.1e-12 46.7 0.1 3.7e-12 45.9 0.1 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|257387860|ref|YP_003177633.1| - 2.5e-07 30.6 1.8 2.8e-07 30.5 0.7 1.6 2 0 0 2 2 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|257387860|ref|YP_003177633.1| - 0.00011 22.1 0.0 0.00022 21.0 0.0 1.5 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.6 gi|257387860|ref|YP_003177633.1| - 0.00059 20.3 0.1 0.0012 19.3 0.1 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain DUF4423 PF14394.6 gi|257387860|ref|YP_003177633.1| - 0.0018 18.0 0.0 0.0029 17.3 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) MarR_2 PF12802.7 gi|257387860|ref|YP_003177633.1| - 0.0051 16.7 0.3 0.0099 15.7 0.3 1.6 1 1 0 1 1 1 1 MarR family HTH_23 PF13384.6 gi|257387860|ref|YP_003177633.1| - 0.013 15.3 0.0 0.022 14.5 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain HTH_34 PF13601.6 gi|257387860|ref|YP_003177633.1| - 0.013 15.7 0.0 0.021 15.0 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF4392 PF14336.6 gi|257387860|ref|YP_003177633.1| - 0.02 14.4 0.0 0.025 14.0 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4392) HTH_Crp_2 PF13545.6 gi|257387860|ref|YP_003177633.1| - 0.024 14.6 0.2 0.13 12.2 0.1 2.1 1 1 1 2 2 2 0 Crp-like helix-turn-helix domain PaaX PF07848.12 gi|257387860|ref|YP_003177633.1| - 0.024 14.9 0.0 0.045 14.0 0.0 1.4 1 0 0 1 1 1 0 PaaX-like protein DUF480 PF04337.12 gi|257387860|ref|YP_003177633.1| - 0.03 14.4 0.0 0.069 13.2 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function, DUF480 HTH_IclR PF09339.10 gi|257387860|ref|YP_003177633.1| - 0.033 14.0 0.3 0.62 9.9 0.0 2.4 2 0 0 2 2 2 0 IclR helix-turn-helix domain Rrf2 PF02082.20 gi|257387860|ref|YP_003177633.1| - 0.036 14.4 0.0 0.059 13.7 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator DUF2250 PF10007.9 gi|257387860|ref|YP_003177633.1| - 0.053 13.6 0.0 0.085 13.0 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) DUF166 PF02593.14 gi|257387860|ref|YP_003177633.1| - 0.055 13.0 0.1 0.062 12.8 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function MarR PF01047.22 gi|257387860|ref|YP_003177633.1| - 0.058 13.3 0.1 0.13 12.2 0.0 1.8 2 1 0 2 2 2 0 MarR family GntR PF00392.21 gi|257387860|ref|YP_003177633.1| - 0.064 12.9 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family Mrr_N PF14338.6 gi|257387860|ref|YP_003177633.1| - 0.075 13.2 0.0 0.13 12.4 0.0 1.4 1 0 0 1 1 1 0 Mrr N-terminal domain Mago-bind PF09282.10 gi|257387860|ref|YP_003177633.1| - 0.1 12.5 0.4 0.16 11.8 0.4 1.3 1 0 0 1 1 1 0 Mago binding Fe_dep_repress PF01325.19 gi|257387860|ref|YP_003177633.1| - 0.11 12.8 0.0 0.2 11.9 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain PAX PF00292.18 gi|257387860|ref|YP_003177633.1| - 0.13 12.2 0.0 0.29 11.1 0.0 1.6 2 0 0 2 2 2 0 'Paired box' domain Penicillinase_R PF03965.16 gi|257387860|ref|YP_003177633.1| - 0.14 12.6 0.0 0.44 10.9 0.0 1.7 2 0 0 2 2 2 0 Penicillinase repressor GTP_EFTU PF00009.27 gi|257387861|ref|YP_003177634.1| - 1.9e-33 115.7 0.1 2.8e-33 115.1 0.1 1.2 1 0 0 1 1 1 1 Elongation factor Tu GTP binding domain GTP_EFTU_D2 PF03144.25 gi|257387861|ref|YP_003177634.1| - 1.2e-10 41.6 0.3 4.3e-10 39.8 0.3 2.0 1 0 0 1 1 1 1 Elongation factor Tu domain 2 GTP_EFTU_D3 PF03143.17 gi|257387861|ref|YP_003177634.1| - 1.7e-07 31.5 0.0 8e-07 29.4 0.0 2.1 1 1 0 1 1 1 1 Elongation factor Tu C-terminal domain MeaB PF03308.16 gi|257387861|ref|YP_003177634.1| - 0.0021 17.1 0.8 0.068 12.1 0.0 2.6 3 0 0 3 3 3 1 Methylmalonyl Co-A mutase-associated GTPase MeaB ATP_bind_1 PF03029.17 gi|257387861|ref|YP_003177634.1| - 0.011 15.5 0.5 0.052 13.3 0.0 1.9 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein MMR_HSR1 PF01926.23 gi|257387861|ref|YP_003177634.1| - 0.068 13.3 0.0 0.25 11.4 0.0 1.9 1 1 0 1 1 1 0 50S ribosome-binding GTPase Cdc6_C PF09079.11 gi|257387862|ref|YP_003177635.1| - 2.8e-17 62.5 0.0 5.2e-17 61.6 0.0 1.5 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|257387862|ref|YP_003177635.1| - 1.2e-08 35.3 0.0 3.3e-08 33.9 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|257387862|ref|YP_003177635.1| - 4.5e-08 33.7 3.4 7.8e-08 32.9 0.0 2.8 2 2 0 2 2 2 1 AAA ATPase domain RNA_helicase PF00910.22 gi|257387862|ref|YP_003177635.1| - 0.0059 17.0 0.0 0.012 15.9 0.0 1.6 1 0 0 1 1 1 1 RNA helicase TrwB_AAD_bind PF10412.9 gi|257387862|ref|YP_003177635.1| - 0.026 13.4 0.0 1.6 7.6 0.0 2.3 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain ATPase_2 PF01637.18 gi|257387862|ref|YP_003177635.1| - 0.052 13.5 0.0 0.1 12.5 0.0 1.6 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea DUF815 PF05673.13 gi|257387862|ref|YP_003177635.1| - 0.061 12.5 0.0 0.11 11.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) NB-ARC PF00931.22 gi|257387862|ref|YP_003177635.1| - 0.072 12.3 0.0 0.14 11.3 0.0 1.6 1 1 0 1 1 1 0 NB-ARC domain TsaE PF02367.17 gi|257387862|ref|YP_003177635.1| - 0.08 13.0 0.0 0.15 12.0 0.0 1.6 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA PF00004.29 gi|257387862|ref|YP_003177635.1| - 0.081 13.3 0.0 0.45 10.9 0.0 2.3 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 gi|257387862|ref|YP_003177635.1| - 0.096 12.2 0.0 0.61 9.6 0.0 2.0 2 0 0 2 2 2 0 P-loop containing dynein motor region PIF1 PF05970.14 gi|257387862|ref|YP_003177635.1| - 0.1 11.8 0.0 0.17 11.0 0.0 1.3 1 0 0 1 1 1 0 PIF1-like helicase Phage_TAC_2 PF06894.11 gi|257387862|ref|YP_003177635.1| - 0.12 12.1 0.0 0.27 11.0 0.0 1.6 1 0 0 1 1 1 0 Bacteriophage lambda tail assembly chaperone, TAC, protein G NACHT PF05729.12 gi|257387862|ref|YP_003177635.1| - 0.18 11.7 0.0 0.4 10.6 0.0 1.7 1 1 0 1 1 1 0 NACHT domain MCH PF02289.16 gi|257387864|ref|YP_003177637.1| - 9.2e-113 376.6 2.4 1e-112 376.5 2.4 1.0 1 0 0 1 1 1 1 Cyclohydrolase (MCH) DUF2065 PF09838.9 gi|257387865|ref|YP_003177638.1| - 0.0016 18.4 3.2 0.31 11.1 0.2 2.0 2 0 0 2 2 2 2 Uncharacterized protein conserved in bacteria (DUF2065) CopD PF05425.13 gi|257387865|ref|YP_003177638.1| - 0.0036 17.7 1.6 0.0039 17.6 1.6 1.0 1 0 0 1 1 1 1 Copper resistance protein D Photo_RC PF00124.19 gi|257387865|ref|YP_003177638.1| - 0.055 12.7 0.4 0.067 12.4 0.4 1.2 1 0 0 1 1 1 0 Photosynthetic reaction centre protein DUF3185 PF11381.8 gi|257387865|ref|YP_003177638.1| - 6.1 6.9 10.9 8.6 6.5 0.5 2.8 2 1 0 3 3 3 0 Protein of unknown function (DUF3185) DUF202 PF02656.15 gi|257387865|ref|YP_003177638.1| - 6.7 7.2 6.5 65 4.1 6.5 2.0 1 1 0 1 1 1 0 Domain of unknown function (DUF202) Trp_oprn_chp PF09534.10 gi|257387865|ref|YP_003177638.1| - 8.3 6.2 8.6 2.7 7.7 0.2 1.9 1 1 1 2 2 2 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) Thiamine_BP PF01910.17 gi|257387866|ref|YP_003177639.1| - 4.6e-22 77.7 0.3 5.3e-22 77.5 0.3 1.0 1 0 0 1 1 1 1 Thiamine-binding protein Response_reg PF00072.24 gi|257387868|ref|YP_003177641.1| - 8.6e-13 48.4 0.3 1.6e-12 47.6 0.3 1.5 1 0 0 1 1 1 1 Response regulator receiver domain HalX PF08663.10 gi|257387868|ref|YP_003177641.1| - 3.4e-10 40.1 11.1 3.4e-10 40.1 11.1 2.3 2 0 0 2 2 2 1 HalX domain BBP1_C PF15272.6 gi|257387868|ref|YP_003177641.1| - 0.017 14.9 0.8 0.026 14.3 0.8 1.3 1 0 0 1 1 1 0 Spindle pole body component BBP1, C-terminal ABC_tran_CTD PF16326.5 gi|257387868|ref|YP_003177641.1| - 0.084 13.1 6.0 0.11 12.8 4.4 1.9 1 1 1 2 2 2 0 ABC transporter C-terminal domain FlxA PF14282.6 gi|257387868|ref|YP_003177641.1| - 0.15 12.1 0.2 0.23 11.5 0.2 1.2 1 0 0 1 1 1 0 FlxA-like protein DUF4349 PF14257.6 gi|257387868|ref|YP_003177641.1| - 0.4 10.1 5.6 0.8 9.1 5.6 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4349) DUF5320 PF17253.2 gi|257387868|ref|YP_003177641.1| - 0.47 11.6 0.8 4.3 8.5 1.1 2.0 2 0 0 2 2 2 0 Family of unknown function (DUF5320) ABC_tran PF00005.27 gi|257387869|ref|YP_003177642.1| - 3.7e-33 114.9 0.0 6.5e-33 114.1 0.0 1.4 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 gi|257387869|ref|YP_003177642.1| - 3.7e-10 39.8 0.4 1.3e-09 38.1 0.2 2.1 2 0 0 2 2 1 1 TOBE domain OB_MalK PF17912.1 gi|257387869|ref|YP_003177642.1| - 5.8e-09 36.7 0.0 1.1e-07 32.6 0.0 2.9 2 0 0 2 2 2 1 MalK OB fold domain AAA_21 PF13304.6 gi|257387869|ref|YP_003177642.1| - 1.6e-05 24.9 0.0 0.18 11.6 0.0 2.3 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|257387869|ref|YP_003177642.1| - 0.00022 21.6 0.1 0.00079 19.8 0.1 2.0 2 1 0 2 2 2 1 AAA ATPase domain SMC_N PF02463.19 gi|257387869|ref|YP_003177642.1| - 0.00026 20.5 0.3 0.0013 18.2 0.3 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|257387869|ref|YP_003177642.1| - 0.00034 20.9 0.2 0.0011 19.3 0.1 1.9 1 1 1 2 2 2 1 AAA domain TOBE PF03459.17 gi|257387869|ref|YP_003177642.1| - 0.00047 20.4 0.1 0.0011 19.2 0.1 1.7 1 0 0 1 1 1 1 TOBE domain CysA_C_terminal PF17850.1 gi|257387869|ref|YP_003177642.1| - 0.0018 18.8 0.5 0.0094 16.5 0.0 2.6 3 0 0 3 3 1 1 CysA C-terminal regulatory domain Rad17 PF03215.15 gi|257387869|ref|YP_003177642.1| - 0.0037 17.2 0.0 0.0056 16.6 0.0 1.2 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_33 PF13671.6 gi|257387869|ref|YP_003177642.1| - 0.0037 17.4 0.0 0.007 16.5 0.0 1.7 1 1 0 1 1 1 1 AAA domain RsgA_GTPase PF03193.16 gi|257387869|ref|YP_003177642.1| - 0.012 15.6 0.0 0.022 14.7 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase AAA_29 PF13555.6 gi|257387869|ref|YP_003177642.1| - 0.014 15.1 0.0 0.045 13.5 0.0 1.8 2 0 0 2 2 1 0 P-loop containing region of AAA domain AAA_25 PF13481.6 gi|257387869|ref|YP_003177642.1| - 0.021 14.4 0.0 0.6 9.7 0.0 2.5 2 1 0 2 2 2 0 AAA domain AAA_30 PF13604.6 gi|257387869|ref|YP_003177642.1| - 0.03 14.0 0.2 0.059 13.1 0.2 1.5 1 1 0 1 1 1 0 AAA domain AAA PF00004.29 gi|257387869|ref|YP_003177642.1| - 0.043 14.2 0.0 0.18 12.2 0.0 2.0 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 gi|257387869|ref|YP_003177642.1| - 0.056 13.7 0.0 0.11 12.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain Cytidylate_kin PF02224.18 gi|257387869|ref|YP_003177642.1| - 0.073 12.8 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 Cytidylate kinase AAA_18 PF13238.6 gi|257387869|ref|YP_003177642.1| - 0.11 13.1 0.0 0.24 11.9 0.0 1.6 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|257387869|ref|YP_003177642.1| - 0.11 12.9 0.2 0.96 9.9 0.1 2.4 2 1 0 2 2 2 0 RNA helicase ATPase_2 PF01637.18 gi|257387869|ref|YP_003177642.1| - 0.15 12.0 0.0 0.26 11.2 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_15 PF13175.6 gi|257387869|ref|YP_003177642.1| - 0.27 10.9 0.0 0.53 9.9 0.0 1.5 2 0 0 2 2 2 0 AAA ATPase domain BPD_transp_1 PF00528.22 gi|257387870|ref|YP_003177643.1| - 1.3e-12 47.9 13.0 1.3e-12 47.9 13.0 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|257387871|ref|YP_003177644.1| - 8.7e-20 71.2 15.0 8.7e-20 71.2 15.0 1.8 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component SBP_bac_8 PF13416.6 gi|257387872|ref|YP_003177645.1| - 1.9e-24 87.0 3.3 2.4e-24 86.6 3.3 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|257387872|ref|YP_003177645.1| - 6.7e-14 52.5 4.2 8.9e-14 52.1 4.2 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|257387872|ref|YP_003177645.1| - 0.09 12.5 0.1 0.39 10.4 0.1 2.0 1 1 0 1 1 1 0 Bacterial extracellular solute-binding protein DUF4013 PF13197.6 gi|257387873|ref|YP_003177646.1| - 2.7e-17 63.1 10.2 2.7e-17 63.1 10.2 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF4013) AveC_like PF17198.4 gi|257387874|ref|YP_003177647.1| - 0.0066 15.9 1.0 0.0081 15.6 1.0 1.1 1 0 0 1 1 1 1 Spirocyclase AveC-like PepSY_TM_like_2 PF16357.5 gi|257387874|ref|YP_003177647.1| - 0.089 12.8 0.8 0.12 12.3 0.8 1.1 1 0 0 1 1 1 0 Putative PepSY_TM-like Nitroreductase PF00881.24 gi|257387874|ref|YP_003177647.1| - 0.18 11.8 0.0 0.21 11.7 0.0 1.1 1 0 0 1 1 1 0 Nitroreductase family G0-G1_switch_2 PF15103.6 gi|257387874|ref|YP_003177647.1| - 1.2 9.5 2.5 1.7 9.1 2.0 1.6 1 1 0 1 1 1 0 G0/G1 switch protein 2 Methyltrn_RNA_3 PF02598.17 gi|257387875|ref|YP_003177648.1| - 3e-68 230.4 0.0 3.4e-68 230.2 0.0 1.0 1 0 0 1 1 1 1 Putative RNA methyltransferase Ribosomal_L3 PF00297.22 gi|257387876|ref|YP_003177649.1| - 9.2e-109 363.8 0.0 2e-108 362.7 0.0 1.5 1 1 0 1 1 1 1 Ribosomal protein L3 Ribosomal_L4 PF00573.22 gi|257387877|ref|YP_003177650.1| - 8.6e-43 146.3 0.1 9.8e-43 146.1 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein L4/L1 family Ribosomal_L23 PF00276.20 gi|257387878|ref|YP_003177651.1| - 1.1e-15 57.7 1.8 9.6e-15 54.7 1.8 1.9 1 1 0 1 1 1 1 Ribosomal protein L23 BsuBI_PstI_RE PF06616.11 gi|257387878|ref|YP_003177651.1| - 0.031 13.6 0.1 0.035 13.4 0.1 1.1 1 0 0 1 1 1 0 BsuBI/PstI restriction endonuclease domain SRPRB PF09439.10 gi|257387878|ref|YP_003177651.1| - 0.056 12.9 0.1 0.072 12.5 0.1 1.2 1 0 0 1 1 1 0 Signal recognition particle receptor beta subunit DUF4162 PF13732.6 gi|257387878|ref|YP_003177651.1| - 0.072 13.8 0.3 5.7 7.7 0.0 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4162) Ribosomal_L2_C PF03947.18 gi|257387879|ref|YP_003177652.1| - 3.4e-45 153.3 3.8 5.2e-45 152.7 3.8 1.3 1 0 0 1 1 1 1 Ribosomal Proteins L2, C-terminal domain Ribosomal_L2 PF00181.23 gi|257387879|ref|YP_003177652.1| - 2.5e-17 62.6 0.0 1e-16 60.7 0.0 2.0 2 0 0 2 2 2 1 Ribosomal Proteins L2, RNA binding domain Lin0512_fam PF09585.10 gi|257387879|ref|YP_003177652.1| - 0.095 12.7 0.5 1.1 9.4 0.1 2.1 1 1 1 2 2 2 0 Conserved hypothetical protein (Lin0512_fam) Ribosomal_S19 PF00203.21 gi|257387880|ref|YP_003177653.1| - 1.2e-31 108.5 0.0 1.5e-31 108.1 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S19 Citrate_synt PF00285.21 gi|257387880|ref|YP_003177653.1| - 0.037 13.1 0.0 0.04 13.0 0.0 1.1 1 0 0 1 1 1 0 Citrate synthase, C-terminal domain Ribosomal_L22 PF00237.19 gi|257387881|ref|YP_003177654.1| - 1.4e-22 79.9 0.0 1.7e-22 79.6 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L22p/L17e Ribosomal_S3_C PF00189.20 gi|257387882|ref|YP_003177655.1| - 4.6e-21 75.1 1.2 8.6e-21 74.3 1.2 1.5 1 0 0 1 1 1 1 Ribosomal protein S3, C-terminal domain KH_2 PF07650.17 gi|257387882|ref|YP_003177655.1| - 1.1e-16 60.4 0.0 3.1e-16 59.0 0.0 1.8 1 0 0 1 1 1 1 KH domain KH_1 PF00013.29 gi|257387882|ref|YP_003177655.1| - 0.0032 17.3 2.7 0.013 15.3 0.5 3.0 3 0 0 3 3 3 1 KH domain KH_4 PF13083.6 gi|257387882|ref|YP_003177655.1| - 1.4 8.9 3.7 0.52 10.2 0.1 2.2 2 0 0 2 2 2 0 KH domain Ribosomal_L29 PF00831.23 gi|257387883|ref|YP_003177656.1| - 7.7e-19 67.4 0.3 9.7e-19 67.1 0.3 1.1 1 0 0 1 1 1 1 Ribosomal L29 protein UPF0086 PF01868.16 gi|257387884|ref|YP_003177657.1| - 3e-23 81.5 0.0 3.4e-23 81.4 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function UPF0086 DUF4853 PF16145.5 gi|257387884|ref|YP_003177657.1| - 0.13 12.4 0.0 0.16 12.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4853) Ribosomal_S17 PF00366.20 gi|257387885|ref|YP_003177658.1| - 4.6e-26 90.7 0.6 5.7e-26 90.4 0.6 1.1 1 0 0 1 1 1 1 Ribosomal protein S17 Ribosomal_S17_N PF16205.5 gi|257387885|ref|YP_003177658.1| - 0.017 15.5 0.0 0.03 14.7 0.0 1.4 1 0 0 1 1 1 0 Ribosomal_S17 N-terminal Ribosomal_L14 PF00238.19 gi|257387886|ref|YP_003177659.1| - 4.3e-37 126.9 0.2 5.2e-37 126.7 0.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L14p/L23e Ribosomal_L26 PF16906.5 gi|257387887|ref|YP_003177660.1| - 2.3e-21 76.1 0.0 2.6e-21 75.9 0.0 1.0 1 0 0 1 1 1 1 Ribosomal proteins L26 eukaryotic, L24P archaeal KOW PF00467.29 gi|257387887|ref|YP_003177660.1| - 2.8e-08 33.4 2.2 3.9e-08 33.0 1.1 1.9 2 0 0 2 2 2 1 KOW motif Fer2_4 PF13510.6 gi|257387887|ref|YP_003177660.1| - 0.072 13.1 0.3 4 7.6 0.1 2.3 2 0 0 2 2 2 0 2Fe-2S iron-sulfur cluster binding domain Ribosomal_S4e PF00900.20 gi|257387888|ref|YP_003177661.1| - 4.7e-19 68.1 0.0 9.4e-19 67.1 0.0 1.5 1 0 0 1 1 1 1 Ribosomal family S4e RS4NT PF08071.12 gi|257387888|ref|YP_003177661.1| - 9.9e-11 41.6 0.1 1.7e-10 40.8 0.1 1.3 1 0 0 1 1 1 1 RS4NT (NUC023) domain S4 PF01479.25 gi|257387888|ref|YP_003177661.1| - 4.6e-05 23.0 0.0 7.9e-05 22.3 0.0 1.4 1 0 0 1 1 1 1 S4 domain KOW PF00467.29 gi|257387888|ref|YP_003177661.1| - 0.0084 16.0 0.0 0.029 14.3 0.0 2.0 1 0 0 1 1 1 1 KOW motif Peptidase_S24 PF00717.23 gi|257387888|ref|YP_003177661.1| - 0.0093 15.9 0.4 0.039 13.9 0.1 2.2 2 1 1 3 3 3 1 Peptidase S24-like Ribosomal_L5_C PF00673.21 gi|257387889|ref|YP_003177662.1| - 2.2e-19 69.4 0.0 3.4e-19 68.8 0.0 1.3 1 0 0 1 1 1 1 ribosomal L5P family C-terminus Ribosomal_L5 PF00281.19 gi|257387889|ref|YP_003177662.1| - 1.7e-17 63.5 0.1 3e-17 62.7 0.1 1.4 1 0 0 1 1 1 1 Ribosomal protein L5 Ribosomal_S14 PF00253.21 gi|257387890|ref|YP_003177663.1| - 5.2e-11 42.1 0.2 5.8e-11 42.0 0.2 1.1 1 0 0 1 1 1 1 Ribosomal protein S14p/S29e DUF4428 PF14471.6 gi|257387890|ref|YP_003177663.1| - 0.001 19.0 0.2 0.0013 18.6 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4428) Ribosomal_S8 PF00410.19 gi|257387891|ref|YP_003177664.1| - 1.8e-23 82.9 0.0 2.5e-23 82.4 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein S8 Ribosomal_L6 PF00347.23 gi|257387892|ref|YP_003177665.1| - 4.4e-27 94.6 0.0 2.3e-13 50.6 0.0 2.1 2 0 0 2 2 2 2 Ribosomal protein L6 BON PF04972.17 gi|257387892|ref|YP_003177665.1| - 0.27 11.5 4.8 12 6.2 0.1 3.8 3 2 1 4 4 4 0 BON domain Ribosomal_L32e PF01655.18 gi|257387893|ref|YP_003177666.1| - 2.6e-32 111.4 0.8 5.9e-32 110.3 0.5 1.7 2 0 0 2 2 2 1 Ribosomal protein L32 HHH_5 PF14520.6 gi|257387893|ref|YP_003177666.1| - 1.4e-12 48.0 0.9 4.7e-12 46.3 0.2 2.1 2 0 0 2 2 2 1 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.9 gi|257387893|ref|YP_003177666.1| - 3e-07 30.2 0.2 1e-05 25.2 0.1 2.7 1 1 1 2 2 2 1 Fingers domain of DNA polymerase lambda HHH PF00633.23 gi|257387893|ref|YP_003177666.1| - 6.7e-06 25.7 0.2 0.081 12.8 0.0 3.3 3 0 0 3 3 3 2 Helix-hairpin-helix motif Cdd1 PF11731.8 gi|257387893|ref|YP_003177666.1| - 9.2e-05 22.6 0.0 0.00099 19.3 0.0 2.5 2 2 1 3 3 3 1 Pathogenicity locus HHH_2 PF12826.7 gi|257387893|ref|YP_003177666.1| - 0.00016 21.7 0.2 0.00049 20.1 0.2 1.8 1 1 0 1 1 1 1 Helix-hairpin-helix motif HHH_3 PF12836.7 gi|257387893|ref|YP_003177666.1| - 0.0028 17.9 0.1 0.37 11.1 0.1 2.5 1 1 1 2 2 2 1 Helix-hairpin-helix motif HHH_8 PF14716.6 gi|257387893|ref|YP_003177666.1| - 0.016 15.6 0.8 4 7.9 0.0 2.8 2 1 1 3 3 3 0 Helix-hairpin-helix domain Spt5_N PF11942.8 gi|257387893|ref|YP_003177666.1| - 0.031 15.3 3.8 0.031 15.3 3.8 2.8 3 0 0 3 3 3 0 Spt5 transcription elongation factor, acidic N-terminal LytR_C PF13399.6 gi|257387893|ref|YP_003177666.1| - 0.1 13.6 1.9 0.43 11.6 0.6 2.4 2 1 1 3 3 3 0 LytR cell envelope-related transcriptional attenuator Ribosomal_L19e PF01280.20 gi|257387894|ref|YP_003177667.1| - 1.6e-55 187.1 4.0 1.8e-55 187.0 4.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L19e Ribosomal_L5e PF17144.4 gi|257387895|ref|YP_003177668.1| - 1.2e-28 100.1 0.0 3.3e-18 66.2 0.0 2.3 1 1 1 2 2 2 2 Ribosomal large subunit proteins 60S L5, and 50S L18 Ribosomal_L18p PF00861.22 gi|257387895|ref|YP_003177668.1| - 2.1e-07 31.3 0.0 3.2e-07 30.7 0.0 1.3 1 0 0 1 1 1 1 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Ribosomal_S5_C PF03719.15 gi|257387896|ref|YP_003177669.1| - 6.1e-25 86.5 0.0 9.1e-25 85.9 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein S5, C-terminal domain Ribosomal_S5 PF00333.20 gi|257387896|ref|YP_003177669.1| - 9.9e-22 76.7 0.1 2.5e-21 75.4 0.1 1.7 1 0 0 1 1 1 1 Ribosomal protein S5, N-terminal domain DUF1421 PF07223.11 gi|257387896|ref|YP_003177669.1| - 0.09 12.6 0.1 1.4 8.8 0.0 2.3 2 0 0 2 2 2 0 UBA-like domain (DUF1421) Ribosomal_L30 PF00327.20 gi|257387897|ref|YP_003177670.1| - 1.5e-08 34.3 0.0 2.3e-08 33.8 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L30p/L7e Ribosomal_L27A PF00828.19 gi|257387898|ref|YP_003177671.1| - 2.2e-18 67.1 0.6 3.9e-18 66.4 0.6 1.4 1 0 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A SecY PF00344.20 gi|257387899|ref|YP_003177672.1| - 6.7e-70 235.8 18.0 8e-70 235.5 18.0 1.1 1 0 0 1 1 1 1 SecY translocase Plug_translocon PF10559.9 gi|257387899|ref|YP_003177672.1| - 9.1e-09 35.0 1.5 6.2e-08 32.3 1.5 2.6 1 0 0 1 1 1 1 Plug domain of Sec61p zinc_ribbon_5 PF13719.6 gi|257387900|ref|YP_003177673.1| - 0.0018 18.0 1.3 0.78 9.5 0.1 2.5 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|257387900|ref|YP_003177673.1| - 0.005 16.7 2.8 0.13 12.2 0.1 2.4 2 0 0 2 2 2 1 zinc-ribbon domain FYDLN_acid PF09538.10 gi|257387900|ref|YP_003177673.1| - 0.025 15.2 0.1 1.7 9.4 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (FYDLN_acid) DZR PF12773.7 gi|257387900|ref|YP_003177673.1| - 0.3 11.1 8.6 2.7 8.1 5.5 2.4 1 1 1 2 2 2 0 Double zinc ribbon HypA PF01155.19 gi|257387900|ref|YP_003177673.1| - 1.3 9.0 6.5 6.2 6.9 4.1 2.1 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|257387900|ref|YP_003177673.1| - 1.7 8.8 10.0 14 5.9 1.3 2.5 1 1 1 2 2 2 0 Zinc ribbon domain DUF2318 PF10080.9 gi|257387900|ref|YP_003177673.1| - 2.7 8.1 6.3 9.4 6.4 0.2 2.4 1 1 0 2 2 2 0 Predicted membrane protein (DUF2318) DUF1272 PF06906.11 gi|257387900|ref|YP_003177673.1| - 2.9 8.1 9.2 0.17 12.0 3.4 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1272) GATase_3 PF07685.14 gi|257387902|ref|YP_003177675.1| - 2.5e-40 138.2 0.0 3.7e-40 137.6 0.0 1.2 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.23 gi|257387902|ref|YP_003177675.1| - 2e-23 82.8 0.0 3.2e-23 82.2 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 gi|257387902|ref|YP_003177675.1| - 3.6e-16 59.6 0.0 2.2e-15 57.0 0.0 2.1 2 1 0 2 2 2 1 AAA domain DUF1611 PF07755.11 gi|257387902|ref|YP_003177675.1| - 0.095 12.0 0.1 1.6 7.9 0.1 2.4 3 0 0 3 3 3 0 Domain of unknown function (DUF1611_C) P-loop domain NTPase_1 PF03266.15 gi|257387902|ref|YP_003177675.1| - 0.097 12.6 0.0 0.16 11.8 0.0 1.4 1 0 0 1 1 1 0 NTPase SNO PF01174.19 gi|257387902|ref|YP_003177675.1| - 0.15 11.9 0.0 0.26 11.1 0.0 1.3 1 0 0 1 1 1 0 SNO glutamine amidotransferase family GATase_3 PF07685.14 gi|257387903|ref|YP_003177676.1| - 5.3e-34 117.5 0.0 6.9e-34 117.2 0.0 1.1 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CbiA PF01656.23 gi|257387903|ref|YP_003177676.1| - 7.6e-12 45.4 0.0 1.2e-11 44.8 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_26 PF13500.6 gi|257387903|ref|YP_003177676.1| - 7.5e-11 42.2 0.0 7.7e-07 29.1 0.0 2.2 2 0 0 2 2 2 2 AAA domain SNO PF01174.19 gi|257387903|ref|YP_003177676.1| - 0.012 15.4 0.0 0.024 14.5 0.0 1.4 1 0 0 1 1 1 0 SNO glutamine amidotransferase family CbiX PF01903.17 gi|257387904|ref|YP_003177677.1| - 1.2e-26 93.1 0.3 7.5e-13 48.7 0.0 2.1 2 0 0 2 2 2 2 CbiX TP_methylase PF00590.20 gi|257387905|ref|YP_003177678.1| - 2.2e-31 109.5 0.7 2.6e-31 109.2 0.7 1.0 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases CbiC PF02570.15 gi|257387906|ref|YP_003177679.1| - 1.5e-51 174.8 1.1 1.8e-51 174.6 1.1 1.1 1 0 0 1 1 1 1 Precorrin-8X methylmutase CobN-Mg_chel PF02514.16 gi|257387907|ref|YP_003177680.1| - 0 1254.0 0.0 0 1253.8 0.0 1.0 1 0 0 1 1 1 1 CobN/Magnesium Chelatase LexA_DNA_bind PF01726.16 gi|257387907|ref|YP_003177680.1| - 0.026 14.3 0.0 0.064 13.0 0.0 1.6 1 0 0 1 1 1 0 LexA DNA binding domain AAA_lid_2 PF17863.1 gi|257387908|ref|YP_003177681.1| - 2.9e-20 71.9 5.9 2.9e-20 71.9 5.9 2.3 2 0 0 2 2 2 1 AAA lid domain Mg_chelatase PF01078.21 gi|257387908|ref|YP_003177681.1| - 1.2e-13 50.9 0.1 2e-08 33.9 0.0 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI VWA_2 PF13519.6 gi|257387908|ref|YP_003177681.1| - 1.8e-12 47.8 0.0 4.2e-12 46.6 0.0 1.6 1 0 0 1 1 1 1 von Willebrand factor type A domain AAA_5 PF07728.14 gi|257387908|ref|YP_003177681.1| - 4.7e-11 42.8 0.0 6.1e-06 26.3 0.0 2.4 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) VWA PF00092.28 gi|257387908|ref|YP_003177681.1| - 3.2e-10 40.5 0.0 5.3e-10 39.8 0.0 1.3 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.14 gi|257387908|ref|YP_003177681.1| - 1.4e-08 34.4 3.3 3e-08 33.3 3.3 1.5 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein MCM PF00493.23 gi|257387908|ref|YP_003177681.1| - 3.2e-05 23.2 0.0 0.00019 20.6 0.0 2.0 2 0 0 2 2 2 1 MCM P-loop domain Sigma54_activat PF00158.26 gi|257387908|ref|YP_003177681.1| - 0.00097 18.9 0.0 0.092 12.4 0.0 2.2 2 0 0 2 2 2 1 Sigma-54 interaction domain AAA_16 PF13191.6 gi|257387908|ref|YP_003177681.1| - 0.0054 17.1 0.7 0.043 14.2 0.2 2.8 2 1 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|257387908|ref|YP_003177681.1| - 0.19 12.0 0.0 1.4 9.2 0.0 2.4 2 1 0 2 2 2 0 AAA domain SDA1 PF05285.12 gi|257387908|ref|YP_003177681.1| - 1.4 8.2 11.5 2.1 7.7 11.5 1.2 1 0 0 1 1 1 0 SDA1 CbtB PF09489.10 gi|257387909|ref|YP_003177682.1| - 7.7e-14 51.5 5.5 9.1e-14 51.3 5.5 1.1 1 0 0 1 1 1 1 Probable cobalt transporter subunit (CbtB) CbtA PF09490.10 gi|257387910|ref|YP_003177683.1| - 3.2e-36 125.3 22.4 3.7e-36 125.1 22.4 1.0 1 0 0 1 1 1 1 Probable cobalt transporter subunit (CbtA) DUF1636 PF07845.11 gi|257387911|ref|YP_003177684.1| - 0.021 15.2 0.0 0.025 15.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1636) PQQ_2 PF13360.6 gi|257387912|ref|YP_003177685.1| - 5.7e-18 65.4 16.9 4.3e-11 42.8 3.5 3.4 1 1 2 3 3 3 3 PQQ-like domain PQQ_3 PF13570.6 gi|257387912|ref|YP_003177685.1| - 6.7e-10 39.1 28.6 0.17 12.4 0.2 8.4 8 2 0 8 8 8 5 PQQ-like domain PQQ PF01011.21 gi|257387912|ref|YP_003177685.1| - 3e-07 30.0 2.7 0.02 14.8 0.0 5.7 6 0 0 6 6 6 2 PQQ enzyme repeat DUF3209 PF11483.8 gi|257387913|ref|YP_003177686.1| - 3.7e-52 176.0 5.2 4.2e-52 175.8 5.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF3209) MnmE_helical PF12631.7 gi|257387913|ref|YP_003177686.1| - 0.039 14.1 1.0 0.058 13.5 1.0 1.3 1 0 0 1 1 1 0 MnmE helical domain T3SS_needle_E PF08988.10 gi|257387913|ref|YP_003177686.1| - 0.046 13.9 1.2 0.1 12.8 1.2 1.6 1 0 0 1 1 1 0 Type III secretion system, cytoplasmic E component of needle APG6_N PF17675.1 gi|257387913|ref|YP_003177686.1| - 0.05 14.1 2.3 0.07 13.7 2.3 1.2 1 0 0 1 1 1 0 Apg6 coiled-coil region HWE_HK PF07536.14 gi|257387913|ref|YP_003177686.1| - 0.16 12.7 1.6 2.4 8.9 0.2 2.5 1 1 1 2 2 2 0 HWE histidine kinase CbiX PF01903.17 gi|257387914|ref|YP_003177687.1| - 3.1e-47 159.3 0.1 1e-23 83.7 0.3 2.7 3 0 0 3 3 3 2 CbiX 2Fe-2S_thioredx PF01257.19 gi|257387914|ref|YP_003177687.1| - 8.1e-08 32.2 0.1 1.5e-07 31.4 0.1 1.4 1 0 0 1 1 1 1 Thioredoxin-like [2Fe-2S] ferredoxin CbiK PF06180.11 gi|257387914|ref|YP_003177687.1| - 5.6e-05 22.6 0.0 0.012 14.9 0.0 2.1 1 1 1 2 2 2 2 Cobalt chelatase (CbiK) Suc_Fer-like PF06999.12 gi|257387914|ref|YP_003177687.1| - 0.026 14.4 0.0 0.14 12.0 0.0 1.8 1 1 0 2 2 2 0 Sucrase/ferredoxin-like ThiG PF05690.14 gi|257387914|ref|YP_003177687.1| - 0.083 12.2 0.0 0.16 11.2 0.0 1.4 1 0 0 1 1 1 0 Thiazole biosynthesis protein ThiG DUF1636 PF07845.11 gi|257387914|ref|YP_003177687.1| - 0.12 12.9 1.0 2.8 8.4 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF1636) Peptidase_M17_N PF02789.17 gi|257387914|ref|YP_003177687.1| - 0.12 12.2 0.6 0.27 11.1 0.5 1.7 1 1 0 1 1 1 0 Cytosol aminopeptidase family, N-terminal domain Ferrochelatase PF00762.19 gi|257387914|ref|YP_003177687.1| - 0.12 11.4 0.0 5.3 6.0 0.0 2.2 2 0 0 2 2 2 0 Ferrochelatase Fer4_15 PF13459.6 gi|257387916|ref|YP_003177689.1| - 1.3e-18 67.5 7.0 1.4e-18 67.3 7.0 1.0 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|257387916|ref|YP_003177689.1| - 0.00034 21.1 2.0 0.00044 20.7 2.0 1.4 1 1 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Whib PF02467.16 gi|257387916|ref|YP_003177689.1| - 0.068 13.8 0.0 3 8.5 0.0 2.1 2 0 0 2 2 2 0 Transcription factor WhiB TP_methylase PF00590.20 gi|257387917|ref|YP_003177690.1| - 7.2e-39 133.9 0.5 8.8e-39 133.6 0.5 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases TP_methylase PF00590.20 gi|257387918|ref|YP_003177691.1| - 6.8e-42 143.8 0.5 8.3e-42 143.5 0.5 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases CbiG_N PF11760.8 gi|257387919|ref|YP_003177692.1| - 2.3e-28 98.0 0.0 4.6e-28 97.1 0.0 1.5 1 0 0 1 1 1 1 Cobalamin synthesis G N-terminal CbiG_C PF01890.16 gi|257387919|ref|YP_003177692.1| - 1.7e-19 70.5 0.0 4.2e-19 69.2 0.0 1.7 2 0 0 2 2 2 1 Cobalamin synthesis G C-terminus AIRS PF00586.24 gi|257387919|ref|YP_003177692.1| - 0.0064 17.1 1.2 0.013 16.1 0.4 1.9 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain CPSase_L_D2 PF02786.17 gi|257387919|ref|YP_003177692.1| - 0.094 12.2 0.2 1.1 8.7 0.0 2.3 2 0 0 2 2 2 0 Carbamoyl-phosphate synthase L chain, ATP binding domain TP_methylase PF00590.20 gi|257387920|ref|YP_003177693.1| - 1.3e-42 146.2 0.7 1.6e-42 145.8 0.7 1.2 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Radical_SAM PF04055.21 gi|257387920|ref|YP_003177693.1| - 0.00025 21.5 0.2 0.00057 20.3 0.1 1.6 1 1 1 2 2 2 1 Radical SAM superfamily RraB PF06877.11 gi|257387920|ref|YP_003177693.1| - 0.0013 19.5 0.4 0.012 16.3 0.0 2.5 3 0 0 3 3 3 1 Regulator of ribonuclease activity B TP_methylase PF00590.20 gi|257387921|ref|YP_003177694.1| - 1.6e-38 132.8 3.7 1.6e-38 132.8 3.7 1.4 1 1 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases Glyoxalase_6 PF18029.1 gi|257387921|ref|YP_003177694.1| - 0.22 12.3 4.9 1.2 9.9 0.4 2.6 2 0 0 2 2 2 0 Glyoxalase-like domain PCMT PF01135.19 gi|257387922|ref|YP_003177695.1| - 8.1e-05 22.5 0.0 0.00014 21.7 0.0 1.3 1 1 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Cons_hypoth95 PF03602.15 gi|257387922|ref|YP_003177695.1| - 0.00052 19.7 0.0 0.00085 19.0 0.0 1.3 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_25 PF13649.6 gi|257387922|ref|YP_003177695.1| - 0.00086 20.0 0.2 0.0015 19.2 0.1 1.5 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|257387922|ref|YP_003177695.1| - 0.002 17.7 0.2 0.0046 16.5 0.1 1.6 2 0 0 2 2 2 1 Methyltransferase small domain DOT1 PF08123.13 gi|257387922|ref|YP_003177695.1| - 0.0032 17.0 0.0 0.005 16.4 0.0 1.3 1 0 0 1 1 1 1 Histone methylation protein DOT1 Methyltransf_11 PF08241.12 gi|257387922|ref|YP_003177695.1| - 0.0051 17.4 0.2 0.011 16.3 0.1 1.7 1 1 1 2 2 2 1 Methyltransferase domain GATase_3 PF07685.14 gi|257387922|ref|YP_003177695.1| - 0.0061 16.2 0.0 0.0088 15.7 0.0 1.3 1 0 0 1 1 1 1 CobB/CobQ-like glutamine amidotransferase domain CMAS PF02353.20 gi|257387922|ref|YP_003177695.1| - 0.099 11.9 0.0 0.16 11.2 0.0 1.3 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase Response_reg PF00072.24 gi|257387923|ref|YP_003177696.1| - 6.4e-18 65.0 0.2 1.1e-17 64.2 0.2 1.4 1 0 0 1 1 1 1 Response regulator receiver domain HalX PF08663.10 gi|257387923|ref|YP_003177696.1| - 1.2e-16 60.7 10.3 1.2e-16 60.7 10.3 2.3 2 0 0 2 2 2 1 HalX domain TrkH PF02386.16 gi|257387924|ref|YP_003177697.1| - 1.1e-65 222.0 9.3 9.4e-65 219.0 9.3 1.9 1 1 0 1 1 1 1 Cation transport protein TrkA_N PF02254.18 gi|257387925|ref|YP_003177698.1| - 6.4e-49 165.1 13.3 6.8e-25 87.6 2.7 2.7 3 0 0 3 3 3 2 TrkA-N domain TrkA_C PF02080.21 gi|257387925|ref|YP_003177698.1| - 4e-27 93.9 10.6 7.2e-14 51.4 0.2 3.5 3 0 0 3 3 3 2 TrkA-C domain Shikimate_DH PF01488.20 gi|257387925|ref|YP_003177698.1| - 7.4e-12 45.5 1.3 2.8e-05 24.2 0.4 2.6 2 1 0 2 2 2 2 Shikimate / quinate 5-dehydrogenase NAD_binding_10 PF13460.6 gi|257387925|ref|YP_003177698.1| - 3e-09 37.0 6.8 9e-05 22.4 0.1 3.0 2 1 1 3 3 3 2 NAD(P)H-binding F420_oxidored PF03807.17 gi|257387925|ref|YP_003177698.1| - 4.7e-09 36.7 0.7 0.0024 18.4 0.2 3.1 2 2 0 2 2 2 2 NADP oxidoreductase coenzyme F420-dependent Sacchrp_dh_NADP PF03435.18 gi|257387925|ref|YP_003177698.1| - 1.2e-08 35.2 2.2 0.0052 17.0 0.0 2.7 2 1 0 2 2 2 2 Saccharopine dehydrogenase NADP binding domain NAD_binding_7 PF13241.6 gi|257387925|ref|YP_003177698.1| - 1.3e-08 35.2 3.9 0.0012 19.3 1.0 2.6 2 1 0 2 2 2 2 Putative NAD(P)-binding Pyr_redox_2 PF07992.14 gi|257387925|ref|YP_003177698.1| - 2.4e-08 33.6 1.3 5.5e-08 32.4 1.3 1.6 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|257387925|ref|YP_003177698.1| - 8.9e-08 32.6 1.1 0.0019 18.7 0.0 3.4 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|257387925|ref|YP_003177698.1| - 4.2e-06 26.8 0.2 0.0067 16.3 0.2 2.5 2 0 0 2 2 2 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FAD_binding_3 PF01494.19 gi|257387925|ref|YP_003177698.1| - 1.5e-05 24.5 0.0 0.022 14.0 0.1 2.3 2 0 0 2 2 2 2 FAD binding domain adh_short PF00106.25 gi|257387925|ref|YP_003177698.1| - 1.8e-05 24.3 3.4 0.0074 15.8 0.0 2.7 3 0 0 3 3 3 2 short chain dehydrogenase NAD_Gly3P_dh_N PF01210.23 gi|257387925|ref|YP_003177698.1| - 2.3e-05 24.4 0.1 0.36 10.8 0.0 2.9 3 0 0 3 3 3 2 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.16 gi|257387925|ref|YP_003177698.1| - 0.00021 21.0 0.1 0.00085 19.0 0.1 2.0 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA XdhC_C PF13478.6 gi|257387925|ref|YP_003177698.1| - 0.0019 18.7 0.6 0.45 11.0 0.0 2.6 2 1 0 2 2 2 1 XdhC Rossmann domain adh_short_C2 PF13561.6 gi|257387925|ref|YP_003177698.1| - 0.0021 17.7 2.4 0.06 12.9 0.0 2.5 2 0 0 2 2 2 1 Enoyl-(Acyl carrier protein) reductase NAD_binding_2 PF03446.15 gi|257387925|ref|YP_003177698.1| - 0.0029 17.8 0.0 0.39 10.9 0.0 2.4 2 0 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase UDPG_MGDP_dh_N PF03721.14 gi|257387925|ref|YP_003177698.1| - 0.005 16.4 0.9 0.014 15.0 0.3 2.1 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 2-Hacid_dh_C PF02826.19 gi|257387925|ref|YP_003177698.1| - 0.0072 15.7 0.2 3.4 7.0 0.0 2.7 2 1 0 2 2 2 2 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Castor_Poll_mid PF06241.12 gi|257387925|ref|YP_003177698.1| - 0.0077 16.2 0.0 1.4 8.9 0.0 2.5 2 0 0 2 2 2 1 Castor and Pollux, part of voltage-gated ion channel PIN_3 PF13470.6 gi|257387925|ref|YP_003177698.1| - 0.0087 16.8 0.4 0.039 14.7 0.1 2.1 2 0 0 2 2 2 1 PIN domain Rossmann-like PF10727.9 gi|257387925|ref|YP_003177698.1| - 0.021 14.7 1.0 7.7 6.4 0.2 2.9 2 0 0 2 2 2 0 Rossmann-like domain DAO PF01266.24 gi|257387925|ref|YP_003177698.1| - 0.024 14.2 4.9 0.016 14.8 2.2 2.1 1 1 0 2 2 2 0 FAD dependent oxidoreductase Pyr_redox_3 PF13738.6 gi|257387925|ref|YP_003177698.1| - 0.054 12.7 2.3 4.7 6.4 0.3 3.1 2 1 1 3 3 3 0 Pyridine nucleotide-disulphide oxidoreductase ADH_zinc_N PF00107.26 gi|257387925|ref|YP_003177698.1| - 0.14 12.2 2.2 0.63 10.0 0.0 3.1 3 2 1 4 4 4 0 Zinc-binding dehydrogenase ThiF PF00899.21 gi|257387925|ref|YP_003177698.1| - 0.69 9.2 2.5 3.9 6.8 0.2 2.5 2 0 0 2 2 2 0 ThiF family TatD_DNase PF01026.21 gi|257387926|ref|YP_003177699.1| - 3.1e-19 69.4 0.0 4e-17 62.4 0.0 2.0 1 1 0 1 1 1 1 TatD related DNase NYN PF01936.18 gi|257387927|ref|YP_003177700.1| - 9.5e-21 74.8 0.0 1.1e-20 74.6 0.0 1.0 1 0 0 1 1 1 1 NYN domain CoA_binding_2 PF13380.6 gi|257387927|ref|YP_003177700.1| - 0.0039 17.7 0.4 0.081 13.4 0.1 1.9 1 1 1 2 2 2 1 CoA binding domain ADH_zinc_N PF00107.26 gi|257387927|ref|YP_003177700.1| - 0.026 14.5 0.4 0.035 14.1 0.4 1.2 1 0 0 1 1 1 0 Zinc-binding dehydrogenase MFS_1 PF07690.16 gi|257387930|ref|YP_003177703.1| - 6.2e-32 110.9 58.6 1.3e-21 77.0 26.8 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily LacY_symp PF01306.19 gi|257387930|ref|YP_003177703.1| - 0.041 12.7 6.0 6.1 5.5 0.0 3.3 2 1 1 3 3 3 0 LacY proton/sugar symporter MFS_1_like PF12832.7 gi|257387930|ref|YP_003177703.1| - 0.043 12.7 10.5 2.3 7.0 0.0 4.0 2 2 0 3 3 3 0 MFS_1 like family Bac_luciferase PF00296.20 gi|257387931|ref|YP_003177704.1| - 1.8e-34 119.6 7.6 2.1e-34 119.4 7.6 1.1 1 0 0 1 1 1 1 Luciferase-like monooxygenase MFS_1 PF07690.16 gi|257387932|ref|YP_003177705.1| - 1.9e-14 53.4 63.8 8.8e-06 24.9 9.7 3.0 1 1 2 3 3 3 3 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|257387932|ref|YP_003177705.1| - 0.081 11.8 16.1 0.39 9.5 16.3 2.0 1 1 0 1 1 1 0 MFS_1 like family Chloroplast_duf PF14476.6 gi|257387932|ref|YP_003177705.1| - 0.1 11.5 0.4 0.16 10.9 0.4 1.2 1 0 0 1 1 1 0 Petal formation-expressed DsbB PF02600.16 gi|257387933|ref|YP_003177706.1| - 4.6e-16 59.6 10.1 1.8e-15 57.7 10.1 1.7 1 1 0 1 1 1 1 Disulfide bond formation protein DsbB Cyt_bd_oxida_I PF01654.17 gi|257387934|ref|YP_003177707.1| - 4.4e-142 473.6 16.2 5.3e-142 473.3 16.2 1.0 1 0 0 1 1 1 1 Cytochrome bd terminal oxidase subunit I ECF_trnsprt PF12822.7 gi|257387934|ref|YP_003177707.1| - 0.014 15.5 0.7 0.014 15.5 0.7 3.4 1 1 1 2 2 2 0 ECF transporter, substrate-specific component Glucos_trans_II PF14264.6 gi|257387934|ref|YP_003177707.1| - 0.018 14.4 0.1 0.018 14.4 0.1 2.2 4 0 0 4 4 4 0 Glucosyl transferase GtrII Exosortase_EpsH PF09721.10 gi|257387934|ref|YP_003177707.1| - 0.027 14.0 1.3 0.027 14.0 1.3 3.4 3 1 0 3 3 3 0 Transmembrane exosortase (Exosortase_EpsH) Bax1-I PF01027.20 gi|257387934|ref|YP_003177707.1| - 0.075 12.8 0.4 0.075 12.8 0.4 3.4 3 2 0 3 3 3 0 Inhibitor of apoptosis-promoting Bax1 NCE101 PF11654.8 gi|257387934|ref|YP_003177707.1| - 0.15 11.8 0.2 14 5.5 0.0 3.0 3 0 0 3 3 3 0 Non-classical export protein 1 Cyt_bd_oxida_II PF02322.15 gi|257387935|ref|YP_003177708.1| - 2e-68 231.0 31.0 2.3e-68 230.8 31.0 1.0 1 0 0 1 1 1 1 Cytochrome bd terminal oxidase subunit II DUF3579 PF12112.8 gi|257387936|ref|YP_003177709.1| - 0.062 13.8 0.0 0.071 13.7 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3579) Band_7 PF01145.25 gi|257387937|ref|YP_003177710.1| - 0.13 12.2 0.0 0.18 11.8 0.0 1.2 1 0 0 1 1 1 0 SPFH domain / Band 7 family DDE_Tnp_1 PF01609.21 gi|257387938|ref|YP_003177711.1| - 0.0048 16.6 0.0 0.0058 16.3 0.0 1.2 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_2 PF04693.12 gi|257387938|ref|YP_003177711.1| - 0.076 12.2 0.0 0.091 12.0 0.0 1.1 1 0 0 1 1 1 0 Archaeal putative transposase ISC1217 GCV_T PF01571.21 gi|257387939|ref|YP_003177712.1| - 2.8e-78 262.8 0.1 3.4e-78 262.6 0.1 1.1 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.11 gi|257387939|ref|YP_003177712.1| - 3.4e-20 71.7 0.1 6.9e-20 70.8 0.1 1.6 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain GCV_H PF01597.19 gi|257387940|ref|YP_003177713.1| - 1.2e-43 147.8 0.0 1.4e-43 147.7 0.0 1.0 1 0 0 1 1 1 1 Glycine cleavage H-protein Biotin_lipoyl PF00364.22 gi|257387940|ref|YP_003177713.1| - 0.01 15.6 0.1 0.019 14.8 0.1 1.4 1 0 0 1 1 1 0 Biotin-requiring enzyme RnfC_N PF13375.6 gi|257387940|ref|YP_003177713.1| - 0.013 15.4 0.0 0.019 14.9 0.0 1.2 1 0 0 1 1 1 0 RnfC Barrel sandwich hybrid domain GDC-P PF02347.16 gi|257387942|ref|YP_003177715.1| - 6.4e-100 335.0 0.0 7.7e-100 334.7 0.0 1.0 1 0 0 1 1 1 1 Glycine cleavage system P-protein Aminotran_5 PF00266.19 gi|257387943|ref|YP_003177716.1| - 1.9e-09 37.0 0.0 2.7e-09 36.4 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V GDC-P PF02347.16 gi|257387943|ref|YP_003177716.1| - 8e-07 28.2 0.0 4e-06 25.9 0.0 1.9 2 0 0 2 2 2 1 Glycine cleavage system P-protein Beta_elim_lyase PF01212.21 gi|257387943|ref|YP_003177716.1| - 0.0015 17.9 0.0 0.0023 17.3 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|257387943|ref|YP_003177716.1| - 0.016 14.5 0.1 0.025 13.9 0.1 1.2 1 0 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.21 gi|257387943|ref|YP_003177716.1| - 0.055 12.6 0.0 0.08 12.1 0.0 1.2 1 0 0 1 1 1 0 Aminotransferase class I and II NikR_C PF08753.11 gi|257387944|ref|YP_003177717.1| - 1.1e-19 70.3 0.4 1.6e-19 69.8 0.4 1.3 1 0 0 1 1 1 1 NikR C terminal nickel binding domain RHH_1 PF01402.21 gi|257387944|ref|YP_003177717.1| - 8.6e-09 35.0 0.0 1.4e-08 34.3 0.0 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family HicB_lk_antitox PF15919.5 gi|257387944|ref|YP_003177717.1| - 0.024 14.7 0.0 0.036 14.2 0.0 1.3 1 0 0 1 1 1 0 HicB_like antitoxin of bacterial toxin-antitoxin system GSCFA PF08885.11 gi|257387944|ref|YP_003177717.1| - 0.15 11.7 0.0 0.15 11.7 0.0 1.2 1 0 0 1 1 1 0 GSCFA family PAS_4 PF08448.10 gi|257387945|ref|YP_003177718.1| - 2.6e-28 98.4 11.4 4.8e-09 36.4 0.4 4.5 4 0 0 4 4 4 3 PAS fold PAS PF00989.25 gi|257387945|ref|YP_003177718.1| - 8.5e-27 93.4 0.2 6.3e-12 45.5 0.0 4.5 5 0 0 5 5 5 3 PAS fold PAS_9 PF13426.7 gi|257387945|ref|YP_003177718.1| - 4.3e-24 84.8 0.0 1.4e-10 41.3 0.0 3.8 3 0 0 3 3 3 3 PAS domain GAF_2 PF13185.6 gi|257387945|ref|YP_003177718.1| - 1.5e-20 73.9 3.8 1.1e-12 48.4 0.6 3.5 3 0 0 3 3 3 2 GAF domain PAS_8 PF13188.7 gi|257387945|ref|YP_003177718.1| - 1.8e-17 62.9 0.6 6.1e-06 26.1 0.1 4.0 3 0 0 3 3 3 3 PAS domain HATPase_c PF02518.26 gi|257387945|ref|YP_003177718.1| - 2.1e-15 57.2 0.0 7.7e-15 55.4 0.0 2.0 2 0 0 2 2 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_3 PF13492.6 gi|257387945|ref|YP_003177718.1| - 1.2e-13 51.5 0.0 1.2e-06 28.9 0.0 2.9 2 0 0 2 2 2 2 GAF domain GAF PF01590.26 gi|257387945|ref|YP_003177718.1| - 2e-09 38.2 0.0 0.00072 20.2 0.0 3.8 3 1 0 3 3 3 2 GAF domain Response_reg PF00072.24 gi|257387945|ref|YP_003177718.1| - 6.2e-07 29.6 0.0 8.5e-06 25.9 0.0 2.4 2 0 0 2 2 2 1 Response regulator receiver domain HATPase_c_2 PF13581.6 gi|257387945|ref|YP_003177718.1| - 9.1e-07 28.9 0.5 3e-06 27.2 0.1 2.2 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain PAS_3 PF08447.12 gi|257387945|ref|YP_003177718.1| - 4e-05 23.8 0.0 0.019 15.3 0.0 3.2 3 0 0 3 3 3 1 PAS fold HATPase_c_3 PF13589.6 gi|257387945|ref|YP_003177718.1| - 0.00056 19.7 0.1 0.0013 18.6 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|257387945|ref|YP_003177718.1| - 0.00098 19.1 3.7 0.0019 18.2 1.4 2.7 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_10 PF13596.6 gi|257387945|ref|YP_003177718.1| - 0.004 17.7 0.0 17 6.1 0.0 3.9 3 1 1 4 4 4 0 PAS domain HisKA_4TM PF16926.5 gi|257387945|ref|YP_003177718.1| - 0.0055 16.3 0.1 0.021 14.4 0.1 2.0 1 0 0 1 1 1 1 Archaeal 4TM region of histidine kinase PAS_7 PF12860.7 gi|257387945|ref|YP_003177718.1| - 0.0074 16.4 0.2 3.2 8.0 0.0 4.2 3 1 0 3 3 3 1 PAS fold DUF3369 PF11849.8 gi|257387945|ref|YP_003177718.1| - 0.009 16.2 0.0 0.022 15.0 0.0 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF3369) HATPase_c_5 PF14501.6 gi|257387945|ref|YP_003177718.1| - 0.069 13.1 0.0 0.2 11.6 0.0 1.7 2 0 0 2 2 2 0 GHKL domain Response_reg PF00072.24 gi|257387946|ref|YP_003177719.1| - 8.6e-20 71.0 0.0 9.6e-20 70.8 0.0 1.1 1 0 0 1 1 1 1 Response regulator receiver domain FleQ PF06490.11 gi|257387946|ref|YP_003177719.1| - 0.11 12.9 0.0 0.14 12.6 0.0 1.3 1 1 0 1 1 1 0 Flagellar regulatory protein FleQ zf-H2C2_2 PF13465.6 gi|257387948|ref|YP_003177721.1| - 0.0065 16.8 4.0 0.044 14.2 0.3 2.1 2 0 0 2 2 2 1 Zinc-finger double domain Zn_Tnp_IS1595 PF12760.7 gi|257387948|ref|YP_003177721.1| - 0.011 15.6 1.5 0.015 15.3 1.5 1.2 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zf-LITAF-like PF10601.9 gi|257387948|ref|YP_003177721.1| - 0.013 15.7 0.7 0.092 13.0 0.1 2.0 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain zinc-ribbons_6 PF07191.12 gi|257387948|ref|YP_003177721.1| - 0.099 12.6 2.8 0.99 9.4 2.8 1.9 1 1 1 2 2 2 0 zinc-ribbons Cob_adeno_trans PF01923.18 gi|257387951|ref|YP_003177724.1| - 6.9e-56 188.9 0.0 7.7e-56 188.7 0.0 1.0 1 0 0 1 1 1 1 Cobalamin adenosyltransferase HEAT_2 PF13646.6 gi|257387952|ref|YP_003177725.1| - 1.5e-17 63.7 10.6 1.5e-10 41.3 7.2 4.1 3 1 1 4 4 4 2 HEAT repeats HEAT_PBS PF03130.16 gi|257387952|ref|YP_003177725.1| - 2e-11 43.4 23.8 0.00027 21.3 0.3 7.1 7 0 0 7 7 7 3 PBS lyase HEAT-like repeat HEAT PF02985.22 gi|257387952|ref|YP_003177725.1| - 7.5e-07 28.9 0.8 0.18 12.1 0.1 3.8 3 0 0 3 3 3 2 HEAT repeat Arm PF00514.23 gi|257387952|ref|YP_003177725.1| - 5.8e-05 23.0 0.1 0.23 11.5 0.0 3.5 1 1 2 3 3 3 2 Armadillo/beta-catenin-like repeat DUF883 PF05957.13 gi|257387952|ref|YP_003177725.1| - 0.00024 21.6 1.6 0.00024 21.6 1.6 3.0 2 1 1 3 3 3 1 Bacterial protein of unknown function (DUF883) HEAT_EZ PF13513.6 gi|257387952|ref|YP_003177725.1| - 0.00048 20.6 2.8 0.018 15.6 0.1 3.2 2 1 0 2 2 2 1 HEAT-like repeat cwf21 PF08312.12 gi|257387952|ref|YP_003177725.1| - 0.11 12.7 0.1 0.11 12.7 0.1 2.4 3 0 0 3 3 3 0 cwf21 domain CCDC-167 PF15188.6 gi|257387952|ref|YP_003177725.1| - 0.21 12.0 2.8 0.69 10.3 2.5 2.0 2 0 0 2 2 2 0 Coiled-coil domain-containing protein 167 PLDc_2 PF13091.6 gi|257387953|ref|YP_003177726.1| - 7e-37 126.3 0.0 4.8e-21 75.0 0.0 2.2 2 0 0 2 2 2 2 PLD-like domain PLDc PF00614.22 gi|257387953|ref|YP_003177726.1| - 7.4e-08 32.3 1.5 6.7e-06 26.1 0.2 2.6 2 0 0 2 2 2 2 Phospholipase D Active site motif Regulator_TrmB PF11495.8 gi|257387953|ref|YP_003177726.1| - 0.0023 17.2 0.8 0.67 9.1 0.0 2.8 3 0 0 3 3 3 2 Archaeal transcriptional regulator TrmB tRNA_anti-codon PF01336.25 gi|257387954|ref|YP_003177727.1| - 2.7e-13 49.7 0.2 5.6e-13 48.7 0.2 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain S1 PF00575.23 gi|257387954|ref|YP_003177727.1| - 0.00035 20.8 1.1 0.0011 19.2 1.1 1.9 1 0 0 1 1 1 1 S1 RNA binding domain tRNA_anti_2 PF13742.6 gi|257387954|ref|YP_003177727.1| - 0.0013 18.9 0.0 0.003 17.7 0.0 1.6 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain DHH PF01368.20 gi|257387954|ref|YP_003177727.1| - 0.0058 16.8 0.2 0.012 15.8 0.2 1.5 1 0 0 1 1 1 1 DHH family Prok-JAB PF14464.6 gi|257387955|ref|YP_003177728.1| - 2.7e-09 36.8 0.0 3.7e-09 36.4 0.0 1.2 1 0 0 1 1 1 1 Prokaryotic homologs of the JAB domain RadC PF04002.15 gi|257387955|ref|YP_003177728.1| - 0.0047 16.9 0.0 0.011 15.6 0.0 1.5 1 1 0 1 1 1 1 RadC-like JAB domain CTP_transf_like PF01467.26 gi|257387956|ref|YP_003177729.1| - 4.6e-18 65.8 0.1 5.4e-18 65.6 0.1 1.0 1 0 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 gi|257387956|ref|YP_003177729.1| - 0.029 14.3 0.0 0.1 12.5 0.0 1.8 2 0 0 2 2 2 0 FAD synthetase Aminotran_1_2 PF00155.21 gi|257387958|ref|YP_003177731.1| - 3.7e-67 227.1 0.0 4.2e-67 226.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|257387958|ref|YP_003177731.1| - 0.00049 18.7 0.0 0.0008 18.0 0.0 1.2 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme Glyco_hydro_2_N PF02837.18 gi|257387958|ref|YP_003177731.1| - 0.13 12.2 0.0 1.9 8.4 0.0 2.3 2 0 0 2 2 2 0 Glycosyl hydrolases family 2, sugar binding domain DMRL_synthase PF00885.19 gi|257387959|ref|YP_003177732.1| - 2.7e-31 108.3 0.6 2.9e-31 108.2 0.6 1.0 1 0 0 1 1 1 1 6,7-dimethyl-8-ribityllumazine synthase PMT_2 PF13231.6 gi|257387960|ref|YP_003177733.1| - 4.5e-13 49.7 7.5 4.5e-13 49.7 7.5 2.1 2 0 0 2 2 2 1 Dolichyl-phosphate-mannose-protein mannosyltransferase Glucos_trans_II PF14264.6 gi|257387960|ref|YP_003177733.1| - 1.4 8.2 8.1 0.19 11.0 3.6 1.8 2 0 0 2 2 2 0 Glucosyl transferase GtrII ATP-grasp PF02222.22 gi|257387961|ref|YP_003177734.1| - 9.5e-50 168.5 0.0 1.6e-49 167.8 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain PurK_C PF17769.1 gi|257387961|ref|YP_003177734.1| - 2.4e-15 55.9 0.0 4.8e-15 55.0 0.0 1.5 1 0 0 1 1 1 1 Phosphoribosylaminoimidazole carboxylase C-terminal domain Dala_Dala_lig_C PF07478.13 gi|257387961|ref|YP_003177734.1| - 9.9e-06 25.2 0.0 9.6e-05 22.0 0.0 2.2 1 1 0 1 1 1 1 D-ala D-ala ligase C-terminus 2-Hacid_dh_C PF02826.19 gi|257387961|ref|YP_003177734.1| - 1.4e-05 24.5 0.0 2.5e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CPSase_L_D2 PF02786.17 gi|257387961|ref|YP_003177734.1| - 0.0006 19.4 0.0 0.0014 18.2 0.0 1.6 2 0 0 2 2 2 1 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp_3 PF02655.14 gi|257387961|ref|YP_003177734.1| - 0.0032 17.5 0.0 0.02 15.0 0.0 2.1 2 0 0 2 2 2 1 ATP-grasp domain XdhC_C PF13478.6 gi|257387961|ref|YP_003177734.1| - 0.028 14.9 0.1 0.14 12.7 0.1 2.1 1 1 0 1 1 1 0 XdhC Rossmann domain 3HCDH_N PF02737.18 gi|257387961|ref|YP_003177734.1| - 0.086 12.7 0.0 0.18 11.7 0.0 1.5 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ATP-grasp_5 PF13549.6 gi|257387961|ref|YP_003177734.1| - 0.099 12.1 0.0 0.29 10.5 0.0 1.8 2 0 0 2 2 2 0 ATP-grasp domain PALP PF00291.25 gi|257387961|ref|YP_003177734.1| - 0.11 11.9 0.0 0.29 10.5 0.0 1.7 1 1 0 1 1 1 0 Pyridoxal-phosphate dependent enzyme AIRC PF00731.20 gi|257387963|ref|YP_003177736.1| - 6.6e-48 162.0 0.1 9.2e-48 161.6 0.1 1.2 1 0 0 1 1 1 1 AIR carboxylase Apolipoprotein PF01442.18 gi|257387963|ref|YP_003177736.1| - 0.063 13.1 0.4 0.11 12.4 0.0 1.5 2 0 0 2 2 2 0 Apolipoprotein A1/A4/E domain TetR_C_6 PF13977.6 gi|257387963|ref|YP_003177736.1| - 0.093 13.0 0.2 0.58 10.4 0.0 2.1 2 0 0 2 2 2 0 BetI-type transcriptional repressor, C-terminal HisKA PF00512.25 gi|257387963|ref|YP_003177736.1| - 0.14 12.2 0.4 2.2 8.4 0.0 2.5 2 0 0 2 2 2 0 His Kinase A (phospho-acceptor) domain ApoLp-III PF07464.11 gi|257387963|ref|YP_003177736.1| - 0.22 11.6 0.1 0.7 10.0 0.0 1.7 2 0 0 2 2 2 0 Apolipophorin-III precursor (apoLp-III) Oxidored_q4 PF00507.19 gi|257387964|ref|YP_003177737.1| - 4.6e-30 103.7 0.2 5.6e-30 103.4 0.2 1.1 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 Promethin PF16015.5 gi|257387964|ref|YP_003177737.1| - 3.6 7.6 11.0 4.9 7.1 3.4 2.1 2 0 0 2 2 2 0 Promethin Oxidored_q6 PF01058.22 gi|257387965|ref|YP_003177738.1| - 4.9e-22 78.1 0.2 7.2e-22 77.6 0.2 1.2 1 0 0 1 1 1 1 NADH ubiquinone oxidoreductase, 20 Kd subunit Complex1_49kDa PF00346.19 gi|257387966|ref|YP_003177739.1| - 2.1e-84 282.9 0.0 4.9e-83 278.4 0.0 2.1 1 1 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Complex1_30kDa PF00329.19 gi|257387966|ref|YP_003177739.1| - 1e-34 119.8 0.1 2e-34 118.8 0.1 1.5 1 0 0 1 1 1 1 Respiratory-chain NADH dehydrogenase, 30 Kd subunit NADHdh PF00146.21 gi|257387967|ref|YP_003177740.1| - 2.9e-94 315.8 15.2 3.5e-94 315.5 15.2 1.1 1 0 0 1 1 1 1 NADH dehydrogenase Fer4 PF00037.27 gi|257387968|ref|YP_003177741.1| - 1.4e-12 46.9 9.4 1.4e-06 27.9 2.9 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_7 PF12838.7 gi|257387968|ref|YP_003177741.1| - 2.3e-12 47.3 10.4 3.8e-12 46.6 10.4 1.4 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|257387968|ref|YP_003177741.1| - 2.5e-11 44.3 4.7 3.2e-06 28.0 0.2 2.2 2 0 0 2 2 2 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|257387968|ref|YP_003177741.1| - 9.3e-10 38.5 8.7 1.3e-09 38.0 8.7 1.2 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|257387968|ref|YP_003177741.1| - 3.3e-08 33.5 19.3 2.7e-06 27.4 11.6 1.7 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|257387968|ref|YP_003177741.1| - 6.6e-08 32.6 10.9 1.6e-07 31.3 11.2 1.5 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|257387968|ref|YP_003177741.1| - 2.8e-06 27.4 8.0 0.00072 19.9 1.8 2.2 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|257387968|ref|YP_003177741.1| - 8.6e-06 26.1 19.2 0.00067 20.0 11.9 2.1 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|257387968|ref|YP_003177741.1| - 1.1e-05 25.3 13.4 0.0041 17.1 1.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|257387968|ref|YP_003177741.1| - 1.9e-05 25.1 12.5 0.0072 16.8 1.6 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|257387968|ref|YP_003177741.1| - 3.3e-05 23.7 11.5 0.0022 18.0 1.8 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_3 PF12798.7 gi|257387968|ref|YP_003177741.1| - 0.00018 22.2 14.7 0.0038 18.0 3.0 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|257387968|ref|YP_003177741.1| - 0.0026 17.9 9.8 0.13 12.5 1.7 2.2 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|257387968|ref|YP_003177741.1| - 0.0038 18.1 3.9 0.34 11.8 0.3 2.3 2 0 0 2 2 2 2 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|257387968|ref|YP_003177741.1| - 0.057 13.6 8.1 0.24 11.5 8.3 1.8 1 1 0 1 1 1 0 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_13 PF13370.6 gi|257387968|ref|YP_003177741.1| - 1.3 9.6 16.0 1.4 9.6 2.9 2.8 3 0 0 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Oxidored_q3 PF00499.20 gi|257387969|ref|YP_003177742.1| - 4.5e-18 65.4 6.4 4.5e-18 65.4 6.4 1.5 1 1 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DUF4040 PF13244.6 gi|257387969|ref|YP_003177742.1| - 0.36 11.0 15.8 0.089 13.0 12.2 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4040) DUF1418 PF07214.12 gi|257387969|ref|YP_003177742.1| - 3.9 7.4 8.6 2.3 8.1 6.8 1.5 1 1 1 2 2 2 0 Protein of unknown function (DUF1418) Oxidored_q3 PF00499.20 gi|257387970|ref|YP_003177743.1| - 0.0082 15.9 0.5 0.0097 15.6 0.5 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 Oxidored_q2 PF00420.24 gi|257387971|ref|YP_003177744.1| - 6.2e-23 80.4 7.6 6.8e-23 80.3 7.6 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Proton_antipo_M PF00361.20 gi|257387972|ref|YP_003177745.1| - 1.9e-74 250.5 17.9 2.8e-74 250.0 16.8 1.9 1 1 0 1 1 1 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|257387972|ref|YP_003177745.1| - 9.1e-18 64.1 1.0 8.1e-16 57.8 0.1 3.7 3 0 0 3 3 3 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Proton_antipo_C PF01010.19 gi|257387972|ref|YP_003177745.1| - 0.0061 16.2 0.0 1 8.9 0.0 2.3 2 0 0 2 2 2 2 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus Proton_antipo_M PF00361.20 gi|257387973|ref|YP_003177746.1| - 1.1e-69 234.9 28.0 1.1e-69 234.9 28.0 1.7 2 0 0 2 2 2 1 Proton-conducting membrane transporter Oxidored_q5_N PF01059.17 gi|257387973|ref|YP_003177746.1| - 0.00065 19.8 0.5 0.00065 19.8 0.5 3.9 3 2 0 4 4 4 1 NADH-ubiquinone oxidoreductase chain 4, amino terminus Proton_antipo_M PF00361.20 gi|257387974|ref|YP_003177747.1| - 3.6e-68 229.9 24.5 3.6e-68 229.9 24.5 1.9 2 0 0 2 2 2 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|257387974|ref|YP_003177747.1| - 0.0011 19.0 2.5 0.0063 16.6 2.5 2.4 1 0 0 1 1 1 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Oxidored_q5_N PF01059.17 gi|257387974|ref|YP_003177747.1| - 0.074 13.2 3.9 0.27 11.4 0.5 2.8 2 0 0 2 2 2 0 NADH-ubiquinone oxidoreductase chain 4, amino terminus Lactamase_B PF00753.27 gi|257387975|ref|YP_003177748.1| - 1.8e-14 54.3 2.4 5e-14 52.8 2.4 1.7 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|257387975|ref|YP_003177748.1| - 7.9e-06 25.5 0.1 4.1e-05 23.2 0.0 1.9 2 0 0 2 2 2 1 Beta-lactamase superfamily domain SLT_beta PF02258.16 gi|257387978|ref|YP_003177751.1| - 4.3 7.4 5.2 1.4 9.0 0.6 2.2 1 1 1 2 2 2 0 Shiga-like toxin beta subunit TauE PF01925.19 gi|257387979|ref|YP_003177752.1| - 1.1e-19 71.0 37.8 1.4e-19 70.6 37.8 1.1 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DUF656 PF04920.12 gi|257387979|ref|YP_003177752.1| - 0.044 13.7 2.0 0.24 11.3 0.3 2.3 2 0 0 2 2 2 0 Family of unknown function (DUF656) Ebola_NP PF05505.12 gi|257387979|ref|YP_003177752.1| - 0.3 9.4 0.4 0.53 8.5 0.4 1.3 1 0 0 1 1 1 0 Ebola nucleoprotein SBP_bac_6 PF13343.6 gi|257387980|ref|YP_003177753.1| - 4.7e-15 55.7 0.0 6.5e-15 55.2 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|257387980|ref|YP_003177753.1| - 7.6e-09 36.0 4.7 1.1e-08 35.4 4.7 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|257387980|ref|YP_003177753.1| - 0.014 15.2 0.1 0.025 14.3 0.1 1.5 1 0 0 1 1 1 0 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.22 gi|257387981|ref|YP_003177754.1| - 1.7e-26 93.1 36.4 3.4e-14 53.0 15.3 2.8 2 1 1 3 3 3 2 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|257387982|ref|YP_003177755.1| - 7.1e-34 117.3 0.0 1.1e-33 116.6 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 gi|257387982|ref|YP_003177755.1| - 7.2e-11 42.1 1.4 7.2e-11 42.1 1.4 2.3 3 0 0 3 3 1 1 TOBE domain AAA_21 PF13304.6 gi|257387982|ref|YP_003177755.1| - 5.1e-09 36.4 0.4 7.5e-05 22.7 0.1 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system CysA_C_terminal PF17850.1 gi|257387982|ref|YP_003177755.1| - 6.5e-07 29.8 0.7 2.3e-06 28.0 0.7 2.1 1 0 0 1 1 1 1 CysA C-terminal regulatory domain SMC_N PF02463.19 gi|257387982|ref|YP_003177755.1| - 8e-05 22.2 0.1 0.016 14.7 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|257387982|ref|YP_003177755.1| - 8.1e-05 23.1 0.7 0.00017 22.0 0.7 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|257387982|ref|YP_003177755.1| - 0.00031 21.2 0.1 0.003 18.0 0.1 2.2 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|257387982|ref|YP_003177755.1| - 0.0087 16.3 0.5 0.031 14.5 0.0 2.0 2 0 0 2 2 2 1 AAA domain Rad17 PF03215.15 gi|257387982|ref|YP_003177755.1| - 0.0096 15.9 0.0 0.017 15.1 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain TniB PF05621.11 gi|257387982|ref|YP_003177755.1| - 0.011 15.2 0.1 0.65 9.4 0.1 2.2 2 0 0 2 2 2 0 Bacterial TniB protein sCache_3_2 PF17203.4 gi|257387982|ref|YP_003177755.1| - 0.016 15.4 0.4 0.032 14.4 0.4 1.5 1 0 0 1 1 1 0 Single cache domain 3 TOBE PF03459.17 gi|257387982|ref|YP_003177755.1| - 0.02 15.1 0.8 0.066 13.5 0.2 2.2 2 0 0 2 2 2 0 TOBE domain RsgA_GTPase PF03193.16 gi|257387982|ref|YP_003177755.1| - 0.051 13.5 0.0 0.096 12.6 0.0 1.4 1 0 0 1 1 1 0 RsgA GTPase SRP54 PF00448.22 gi|257387982|ref|YP_003177755.1| - 0.053 13.1 0.0 0.89 9.1 0.0 2.1 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain AAA_23 PF13476.6 gi|257387982|ref|YP_003177755.1| - 0.13 12.7 0.1 0.26 11.8 0.1 1.4 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|257387982|ref|YP_003177755.1| - 0.15 11.9 0.1 0.32 10.8 0.1 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_5 PF07728.14 gi|257387982|ref|YP_003177755.1| - 0.15 12.1 0.0 0.47 10.4 0.0 1.8 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) OB_MalK PF17912.1 gi|257387982|ref|YP_003177755.1| - 0.15 12.9 0.0 0.52 11.2 0.0 2.0 1 0 0 1 1 1 0 MalK OB fold domain AAA_28 PF13521.6 gi|257387982|ref|YP_003177755.1| - 0.21 11.8 1.7 0.32 11.2 0.1 2.1 3 0 0 3 3 2 0 AAA domain AIRS_C PF02769.22 gi|257387983|ref|YP_003177756.1| - 1e-21 77.7 2.9 1.5e-21 77.2 2.9 1.2 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|257387983|ref|YP_003177756.1| - 2.2e-09 37.9 1.8 4.6e-09 36.8 0.1 2.2 2 0 0 2 2 2 1 AIR synthase related protein, N-terminal domain Glyco_hydro_68 PF02435.16 gi|257387985|ref|YP_003177758.1| - 8.6e-76 255.5 0.0 2.7e-74 250.6 0.0 2.2 1 1 0 1 1 1 1 Levansucrase/Invertase Glyco_hydro_43 PF04616.14 gi|257387985|ref|YP_003177758.1| - 1.4e-05 24.6 0.0 0.00014 21.3 0.0 2.0 1 1 0 1 1 1 1 Glycosyl hydrolases family 43 Glyco_hydro_32N PF00251.20 gi|257387985|ref|YP_003177758.1| - 0.1 12.1 0.0 0.18 11.4 0.0 1.4 1 0 0 1 1 1 0 Glycosyl hydrolases family 32 N-terminal domain Glyco_hydro_32N PF00251.20 gi|257387986|ref|YP_003177759.1| - 1.1e-75 255.1 0.0 2.6e-75 253.8 0.0 1.6 2 0 0 2 2 2 1 Glycosyl hydrolases family 32 N-terminal domain Glyco_hydro_32C PF08244.12 gi|257387986|ref|YP_003177759.1| - 3.6e-24 85.6 0.0 5.3e-24 85.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolases family 32 C terminal DUF4960 PF16324.5 gi|257387986|ref|YP_003177759.1| - 0.0011 18.6 0.0 0.002 17.7 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4960) TF_Zn_Ribbon PF08271.12 gi|257387987|ref|YP_003177760.1| - 4.8e-06 26.0 1.5 5.8e-06 25.7 1.5 1.1 1 0 0 1 1 1 1 TFIIB zinc-binding Zn_Tnp_IS1595 PF12760.7 gi|257387987|ref|YP_003177760.1| - 0.00045 20.1 4.2 0.1 12.6 0.4 2.1 1 1 1 2 2 2 2 Transposase zinc-ribbon domain zf_UBZ PF18439.1 gi|257387987|ref|YP_003177760.1| - 0.0011 18.5 1.3 0.029 14.0 0.2 2.1 2 0 0 2 2 2 1 Ubiquitin-Binding Zinc Finger DpnI PF06044.12 gi|257387987|ref|YP_003177760.1| - 0.0029 17.3 0.2 0.0031 17.2 0.2 1.0 1 0 0 1 1 1 1 Dam-replacing family OrfB_Zn_ribbon PF07282.11 gi|257387987|ref|YP_003177760.1| - 0.0033 17.3 1.6 0.0041 17.0 1.2 1.4 1 1 0 1 1 1 1 Putative transposase DNA-binding domain DZR PF12773.7 gi|257387987|ref|YP_003177760.1| - 0.006 16.6 0.8 0.0078 16.2 0.8 1.3 1 1 0 1 1 1 1 Double zinc ribbon PriA_CRR PF18319.1 gi|257387987|ref|YP_003177760.1| - 0.0087 16.0 2.2 0.57 10.2 0.2 2.2 2 0 0 2 2 2 1 PriA DNA helicase Cys-rich region (CRR) domain Cys_rich_KTR PF14205.6 gi|257387987|ref|YP_003177760.1| - 0.0089 15.8 0.8 0.012 15.4 0.8 1.3 1 0 0 1 1 1 1 Cysteine-rich KTR zf-TFIIB PF13453.6 gi|257387987|ref|YP_003177760.1| - 0.014 14.7 2.4 0.14 11.5 3.3 1.9 1 1 1 2 2 2 0 Transcription factor zinc-finger zf-ISL3 PF14690.6 gi|257387987|ref|YP_003177760.1| - 0.016 15.9 0.6 4 8.2 0.1 2.1 2 0 0 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 YacG PF03884.14 gi|257387987|ref|YP_003177760.1| - 0.016 14.9 2.4 0.57 9.9 3.1 2.0 1 1 1 2 2 2 0 DNA gyrase inhibitor YacG Ogr_Delta PF04606.12 gi|257387987|ref|YP_003177760.1| - 0.016 15.1 1.3 0.74 9.8 0.0 2.1 2 0 0 2 2 2 0 Ogr/Delta-like zinc finger zf-ribbon_3 PF13248.6 gi|257387987|ref|YP_003177760.1| - 0.022 14.2 1.7 0.73 9.3 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc-ribbons_6 PF07191.12 gi|257387987|ref|YP_003177760.1| - 0.023 14.7 1.1 0.039 13.9 1.1 1.4 1 1 0 1 1 1 0 zinc-ribbons Rubredoxin PF00301.20 gi|257387987|ref|YP_003177760.1| - 0.029 14.4 0.5 7.4 6.7 0.0 2.1 2 0 0 2 2 2 0 Rubredoxin HypA PF01155.19 gi|257387987|ref|YP_003177760.1| - 0.029 14.4 0.6 0.031 14.3 0.6 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_10 PF10058.9 gi|257387987|ref|YP_003177760.1| - 0.037 13.8 1.3 0.081 12.7 1.3 1.6 1 1 0 1 1 1 0 Predicted integral membrane zinc-ribbon metal-binding protein zf-C4_Topoisom PF01396.19 gi|257387987|ref|YP_003177760.1| - 0.04 13.7 1.6 3.4 7.5 0.2 2.1 1 1 1 2 2 2 0 Topoisomerase DNA binding C4 zinc finger PADR1 PF08063.12 gi|257387987|ref|YP_003177760.1| - 0.041 13.7 1.0 2.5 8.0 0.1 2.1 1 1 1 2 2 2 0 PADR1 (NUC008) domain zf-ACC PF17848.1 gi|257387987|ref|YP_003177760.1| - 0.047 13.8 1.3 7.7 6.7 0.2 2.2 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain zf_C2H2_10 PF18414.1 gi|257387987|ref|YP_003177760.1| - 0.077 12.5 1.5 0.61 9.7 0.1 2.1 2 0 0 2 2 2 0 C2H2 type zinc-finger CpXC PF14353.6 gi|257387987|ref|YP_003177760.1| - 0.08 13.0 2.3 1.5 8.9 0.2 2.0 1 1 1 2 2 2 0 CpXC protein zinc_ribbon_2 PF13240.6 gi|257387987|ref|YP_003177760.1| - 0.09 12.5 2.2 4.3 7.2 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain ADK_lid PF05191.14 gi|257387987|ref|YP_003177760.1| - 0.091 12.8 1.1 0.15 12.1 1.1 1.4 1 1 0 1 1 1 0 Adenylate kinase, active site lid GFA PF04828.14 gi|257387987|ref|YP_003177760.1| - 0.1 12.9 1.5 0.81 10.1 0.1 1.9 1 1 1 2 2 2 0 Glutathione-dependent formaldehyde-activating enzyme zf-RRN7 PF11781.8 gi|257387987|ref|YP_003177760.1| - 0.11 12.2 1.8 2.3 8.0 0.2 2.1 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Auto_anti-p27 PF06677.12 gi|257387987|ref|YP_003177760.1| - 0.11 12.6 2.8 0.94 9.7 3.7 1.8 1 1 1 2 2 2 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) zf-LITAF-like PF10601.9 gi|257387987|ref|YP_003177760.1| - 0.12 12.6 3.2 4.3 7.7 3.2 2.1 1 1 0 1 1 1 0 LITAF-like zinc ribbon domain Nudix_N_2 PF14803.6 gi|257387987|ref|YP_003177760.1| - 0.13 12.3 3.3 0.86 9.6 3.3 2.1 1 1 0 1 1 1 0 Nudix N-terminal UPF0547 PF10571.9 gi|257387987|ref|YP_003177760.1| - 0.15 12.1 3.5 2.8 8.1 0.7 2.1 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-Mss51 PF13824.6 gi|257387987|ref|YP_003177760.1| - 0.25 11.4 2.7 2.6 8.2 2.7 2.0 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 zinc_ribbon_9 PF14369.6 gi|257387987|ref|YP_003177760.1| - 0.25 11.6 4.1 4.4 7.6 4.1 2.1 1 1 0 1 1 1 0 zinc-ribbon PhnA_Zn_Ribbon PF08274.12 gi|257387987|ref|YP_003177760.1| - 0.29 11.1 4.3 1.9 8.5 4.3 2.0 1 1 0 1 1 1 0 PhnA Zinc-Ribbon DUF2752 PF10825.8 gi|257387987|ref|YP_003177760.1| - 0.43 10.7 2.5 5.8 7.1 0.3 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2752) DUF1610 PF07754.11 gi|257387987|ref|YP_003177760.1| - 1.1 9.2 6.2 1.4 9.0 0.2 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) MreB_Mbl PF06723.13 gi|257387988|ref|YP_003177761.1| - 5.6e-06 25.4 0.1 1.1e-05 24.4 0.1 1.6 1 1 0 1 1 1 1 MreB/Mbl protein BcrAD_BadFG PF01869.20 gi|257387988|ref|YP_003177761.1| - 0.0087 15.6 0.1 0.042 13.3 0.0 2.0 2 0 0 2 2 2 1 BadF/BadG/BcrA/BcrD ATPase family DNA_gyraseB PF00204.25 gi|257387988|ref|YP_003177761.1| - 0.014 14.9 0.0 0.023 14.2 0.0 1.3 1 0 0 1 1 1 0 DNA gyrase B CheX PF13690.6 gi|257387988|ref|YP_003177761.1| - 0.063 13.5 0.0 0.17 12.1 0.0 1.7 1 0 0 1 1 1 0 Chemotaxis phosphatase CheX Arch_fla_DE PF04659.13 gi|257387989|ref|YP_003177762.1| - 5e-30 103.2 0.1 6.9e-30 102.8 0.1 1.2 1 0 0 1 1 1 1 Archaeal flagella protein AAA_31 PF13614.6 gi|257387990|ref|YP_003177763.1| - 1.1e-35 123.2 0.1 5.2e-35 120.9 0.1 1.8 1 1 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|257387990|ref|YP_003177763.1| - 3.9e-20 72.2 0.0 4.9e-20 71.9 0.0 1.1 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|257387990|ref|YP_003177763.1| - 6.9e-09 35.5 0.2 4e-07 29.7 0.0 2.3 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase MipZ PF09140.11 gi|257387990|ref|YP_003177763.1| - 7.6e-09 35.2 1.5 2.1e-06 27.2 0.1 2.3 2 0 0 2 2 2 2 ATPase MipZ CBP_BcsQ PF06564.12 gi|257387990|ref|YP_003177763.1| - 1.7e-07 31.0 0.1 0.00091 18.8 0.2 2.3 2 0 0 2 2 2 2 Cellulose biosynthesis protein BcsQ Fer4_NifH PF00142.18 gi|257387990|ref|YP_003177763.1| - 1.8e-06 27.6 0.7 5.5e-05 22.8 0.0 2.6 3 1 0 3 3 3 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family ArsA_ATPase PF02374.15 gi|257387990|ref|YP_003177763.1| - 1e-05 24.9 4.2 0.0002 20.7 4.2 2.2 1 1 0 1 1 1 1 Anion-transporting ATPase AAA_30 PF13604.6 gi|257387990|ref|YP_003177763.1| - 0.0042 16.8 0.0 0.0068 16.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain ATP_bind_1 PF03029.17 gi|257387990|ref|YP_003177763.1| - 0.0096 15.7 0.3 0.22 11.3 0.0 2.4 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein CLP1_P PF16575.5 gi|257387990|ref|YP_003177763.1| - 0.013 15.3 0.0 0.038 13.8 0.0 1.7 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop FTHFS PF01268.19 gi|257387990|ref|YP_003177763.1| - 0.1 10.7 0.6 0.3 9.2 0.1 1.8 2 0 0 2 2 2 0 Formate--tetrahydrofolate ligase AAA_25 PF13481.6 gi|257387990|ref|YP_003177763.1| - 0.12 12.0 4.7 0.71 9.4 3.0 2.8 2 1 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|257387990|ref|YP_003177763.1| - 0.16 12.3 0.0 0.5 10.6 0.0 2.0 2 1 0 2 2 2 0 AAA domain VirC1 PF07015.11 gi|257387990|ref|YP_003177763.1| - 0.18 11.1 4.3 0.32 10.2 0.1 2.7 1 1 2 3 3 3 0 VirC1 protein AAA_24 PF13479.6 gi|257387990|ref|YP_003177763.1| - 0.19 11.5 1.9 0.79 9.4 1.2 2.3 1 1 1 2 2 2 0 AAA domain CheW PF01584.19 gi|257387991|ref|YP_003177764.1| - 9.6e-23 80.4 1.8 2.2e-22 79.2 0.4 1.9 2 0 0 2 2 2 1 CheW-like domain MMR_HSR1_Xtn PF16897.5 gi|257387992|ref|YP_003177765.1| - 2.4e-28 98.2 0.1 5.4e-28 97.1 0.1 1.6 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain MMR_HSR1 PF01926.23 gi|257387992|ref|YP_003177765.1| - 2.7e-23 82.2 0.0 5.1e-23 81.3 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase TGS PF02824.21 gi|257387992|ref|YP_003177765.1| - 3.2e-18 65.5 0.0 6.4e-18 64.5 0.0 1.6 1 0 0 1 1 1 1 TGS domain FeoB_N PF02421.18 gi|257387992|ref|YP_003177765.1| - 1.3e-12 47.5 0.6 8.1e-12 44.9 0.0 2.1 2 0 0 2 2 2 1 Ferrous iron transport protein B RsgA_GTPase PF03193.16 gi|257387992|ref|YP_003177765.1| - 1.9e-06 27.9 0.1 0.038 13.9 0.1 2.6 2 1 0 2 2 2 2 RsgA GTPase Dynamin_N PF00350.23 gi|257387992|ref|YP_003177765.1| - 5e-05 23.4 0.2 0.09 12.8 0.1 2.5 1 1 1 2 2 2 2 Dynamin family Arf PF00025.21 gi|257387992|ref|YP_003177765.1| - 0.00052 19.5 0.0 0.07 12.6 0.0 2.3 2 0 0 2 2 2 1 ADP-ribosylation factor family MeaB PF03308.16 gi|257387992|ref|YP_003177765.1| - 0.00083 18.4 0.2 0.041 12.8 0.0 2.6 3 0 0 3 3 3 1 Methylmalonyl Co-A mutase-associated GTPase MeaB GTP_EFTU PF00009.27 gi|257387992|ref|YP_003177765.1| - 0.0092 15.5 0.0 0.35 10.4 0.0 2.5 2 0 0 2 2 2 1 Elongation factor Tu GTP binding domain cobW PF02492.19 gi|257387992|ref|YP_003177765.1| - 0.01 15.5 1.4 1.9 8.1 0.0 2.7 3 0 0 3 3 3 2 CobW/HypB/UreG, nucleotide-binding domain ABC_tran PF00005.27 gi|257387992|ref|YP_003177765.1| - 0.01 16.3 0.0 0.033 14.7 0.0 1.7 2 0 0 2 2 2 0 ABC transporter AAA_28 PF13521.6 gi|257387992|ref|YP_003177765.1| - 0.036 14.3 0.1 0.089 13.0 0.1 1.7 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.6 gi|257387992|ref|YP_003177765.1| - 0.039 14.3 0.0 0.086 13.2 0.0 1.6 1 0 0 1 1 1 0 AAA ATPase domain AIG1 PF04548.16 gi|257387992|ref|YP_003177765.1| - 0.052 12.9 0.0 0.08 12.3 0.0 1.3 1 0 0 1 1 1 0 AIG1 family ABC_tran_CTD PF16326.5 gi|257387992|ref|YP_003177765.1| - 2.8 8.3 8.2 0.2 11.9 2.8 1.9 2 0 0 2 2 2 0 ABC transporter C-terminal domain OrfB_Zn_ribbon PF07282.11 gi|257387993|ref|YP_003177766.1| - 1.7e-21 75.9 0.5 3.3e-21 75.0 0.5 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain E1_dh PF00676.20 gi|257387993|ref|YP_003177766.1| - 0.09 11.7 0.0 0.17 10.8 0.0 1.4 1 0 0 1 1 1 0 Dehydrogenase E1 component Glyoxalase PF00903.25 gi|257387995|ref|YP_003177768.1| - 5.3e-22 78.4 4.7 1.3e-13 51.3 0.7 2.3 2 0 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|257387995|ref|YP_003177768.1| - 2.1e-10 40.8 4.1 0.0014 18.8 0.3 3.9 1 1 3 4 4 4 3 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 gi|257387995|ref|YP_003177768.1| - 9.9e-09 36.0 5.9 5.4e-05 23.9 0.2 2.2 2 0 0 2 2 2 2 Glyoxalase-like domain Glyoxalase_3 PF13468.6 gi|257387995|ref|YP_003177768.1| - 3.7e-08 33.7 3.6 0.013 15.6 0.5 4.0 2 2 0 2 2 2 2 Glyoxalase-like domain PemK_toxin PF02452.17 gi|257387996|ref|YP_003177769.1| - 0.00042 20.7 0.0 0.00043 20.7 0.0 1.0 1 0 0 1 1 1 1 PemK-like, MazF-like toxin of type II toxin-antitoxin system MarR_2 PF12802.7 gi|257387997|ref|YP_003177770.1| - 4.7e-06 26.4 0.0 8e-06 25.7 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|257387997|ref|YP_003177770.1| - 7.4e-05 22.6 0.0 0.00012 21.9 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|257387997|ref|YP_003177770.1| - 0.00017 21.0 0.0 0.0013 18.2 0.0 2.4 2 1 0 2 2 2 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|257387997|ref|YP_003177770.1| - 0.0003 20.6 0.0 0.00053 19.8 0.0 1.4 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_23 PF13384.6 gi|257387997|ref|YP_003177770.1| - 0.0061 16.3 0.0 0.012 15.4 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_IclR PF09339.10 gi|257387997|ref|YP_003177770.1| - 0.0093 15.8 0.0 0.032 14.1 0.0 1.9 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|257387997|ref|YP_003177770.1| - 0.015 15.1 0.0 0.028 14.3 0.0 1.6 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|257387997|ref|YP_003177770.1| - 0.022 14.8 0.0 0.063 13.3 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain DUF1318 PF07027.12 gi|257387997|ref|YP_003177770.1| - 0.025 15.0 0.0 0.033 14.6 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1318) DUF4423 PF14394.6 gi|257387997|ref|YP_003177770.1| - 0.036 13.8 0.0 0.085 12.6 0.0 1.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4423) Fe_dep_repress PF01325.19 gi|257387997|ref|YP_003177770.1| - 0.038 14.2 0.0 0.058 13.6 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain RepL PF05732.11 gi|257387997|ref|YP_003177770.1| - 0.18 11.2 0.0 0.26 10.7 0.0 1.2 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) PGF-CTERM PF18204.1 gi|257387998|ref|YP_003177771.1| - 7.3e-06 25.8 10.2 1.5e-05 24.7 10.2 1.5 1 0 0 1 1 1 1 PGF-CTERM motif Exosortase_EpsH PF09721.10 gi|257387999|ref|YP_003177772.1| - 1.6e-16 60.6 19.7 6.1e-16 58.7 19.8 1.8 1 1 0 1 1 1 1 Transmembrane exosortase (Exosortase_EpsH) TP_methylase PF00590.20 gi|257388000|ref|YP_003177773.1| - 5.9e-20 72.1 1.6 6.9e-20 71.9 1.6 1.1 1 0 0 1 1 1 1 Tetrapyrrole (Corrin/Porphyrin) Methylases GHL6 PF14871.6 gi|257388000|ref|YP_003177773.1| - 0.052 13.7 0.0 0.1 12.7 0.0 1.5 1 0 0 1 1 1 0 Hypothetical glycosyl hydrolase 6 Met_10 PF02475.16 gi|257388001|ref|YP_003177774.1| - 7.4e-53 179.3 0.0 9.9e-53 178.8 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein Trm5_N PF18093.1 gi|257388001|ref|YP_003177774.1| - 1.6e-09 37.5 0.0 3.6e-09 36.4 0.0 1.6 1 0 0 1 1 1 1 tRNA methyltransferase 5 N-terminal domain Methyltransf_25 PF13649.6 gi|257388001|ref|YP_003177774.1| - 1.5e-07 32.0 0.0 3.7e-07 30.8 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|257388001|ref|YP_003177774.1| - 7.1e-07 29.1 0.0 3.6e-06 26.9 0.0 1.9 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|257388001|ref|YP_003177774.1| - 7.6e-07 28.8 0.0 1.1e-06 28.3 0.0 1.3 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase MTS PF05175.14 gi|257388001|ref|YP_003177774.1| - 7.3e-05 22.4 0.0 0.00012 21.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain Methyltransf_11 PF08241.12 gi|257388001|ref|YP_003177774.1| - 8.3e-05 23.2 0.0 0.00018 22.1 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|257388001|ref|YP_003177774.1| - 0.00093 18.9 0.0 0.0016 18.1 0.0 1.4 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_24 PF13578.6 gi|257388001|ref|YP_003177774.1| - 0.0011 19.9 0.6 0.0053 17.8 0.1 2.2 2 1 1 3 3 3 1 Methyltransferase domain PrmA PF06325.13 gi|257388001|ref|YP_003177774.1| - 0.0023 17.4 0.1 0.0035 16.8 0.1 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) UPF0020 PF01170.18 gi|257388001|ref|YP_003177774.1| - 0.0061 16.3 0.0 0.011 15.5 0.0 1.3 1 0 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_23 PF13489.6 gi|257388001|ref|YP_003177774.1| - 0.0062 16.4 0.0 0.0093 15.8 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain TRM PF02005.16 gi|257388001|ref|YP_003177774.1| - 0.07 12.3 0.0 0.098 11.8 0.0 1.2 1 0 0 1 1 1 0 N2,N2-dimethylguanosine tRNA methyltransferase DAO PF01266.24 gi|257388002|ref|YP_003177775.1| - 2e-10 40.8 5.2 2.4e-06 27.4 1.1 2.3 1 1 1 2 2 2 2 FAD dependent oxidoreductase Trp_halogenase PF04820.14 gi|257388002|ref|YP_003177775.1| - 3.8e-07 29.3 0.4 0.036 12.9 0.0 3.0 2 1 1 3 3 3 3 Tryptophan halogenase Lycopene_cycl PF05834.12 gi|257388002|ref|YP_003177775.1| - 6e-07 28.8 2.1 0.00077 18.6 0.3 2.9 2 1 0 2 2 2 2 Lycopene cyclase protein FAD_binding_2 PF00890.24 gi|257388002|ref|YP_003177775.1| - 2.1e-05 23.8 3.0 0.0021 17.2 0.1 2.3 1 1 1 2 2 2 2 FAD binding domain FAD_binding_3 PF01494.19 gi|257388002|ref|YP_003177775.1| - 9.4e-05 21.8 0.8 0.00029 20.2 0.8 1.7 1 1 0 1 1 1 1 FAD binding domain Thi4 PF01946.17 gi|257388002|ref|YP_003177775.1| - 0.00036 19.8 0.3 0.0015 17.8 0.1 2.0 2 0 0 2 2 2 1 Thi4 family Pyr_redox_2 PF07992.14 gi|257388002|ref|YP_003177775.1| - 0.00041 19.7 1.6 0.013 14.7 1.8 2.1 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|257388002|ref|YP_003177775.1| - 0.00098 18.6 3.1 0.022 14.1 3.1 2.2 1 1 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|257388002|ref|YP_003177775.1| - 0.0033 16.2 0.0 0.0054 15.5 0.0 1.3 1 0 0 1 1 1 1 HI0933-like protein NAD_binding_8 PF13450.6 gi|257388002|ref|YP_003177775.1| - 0.18 12.1 0.6 0.53 10.6 0.1 2.1 2 0 0 2 2 2 0 NAD(P)-binding Rossmann-like domain Zn-ribbon_8 PF09723.10 gi|257388004|ref|YP_003177777.1| - 0.012 15.7 0.2 0.019 15.1 0.2 1.3 1 0 0 1 1 1 0 Zinc ribbon domain DUF1610 PF07754.11 gi|257388004|ref|YP_003177777.1| - 0.022 14.7 0.2 0.033 14.2 0.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1610) Zn_Tnp_IS1595 PF12760.7 gi|257388004|ref|YP_003177777.1| - 0.037 14.0 0.0 0.06 13.3 0.0 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|257388004|ref|YP_003177777.1| - 0.1 12.1 0.2 0.25 10.9 0.0 1.8 2 0 0 2 2 2 0 TFIIB zinc-binding COX3 PF00510.18 gi|257388005|ref|YP_003177778.1| - 1.2e-33 117.0 21.1 1.8e-33 116.4 21.1 1.2 1 0 0 1 1 1 1 Cytochrome c oxidase subunit III Phage_holin_3_6 PF07332.11 gi|257388007|ref|YP_003177780.1| - 0.033 14.2 0.1 0.038 14.0 0.1 1.1 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III zf-C2H2 PF00096.26 gi|257388007|ref|YP_003177780.1| - 0.048 14.1 0.2 0.074 13.5 0.2 1.4 1 0 0 1 1 1 0 Zinc finger, C2H2 type PyrI_C PF02748.15 gi|257388007|ref|YP_003177780.1| - 0.1 12.5 0.1 0.13 12.1 0.1 1.3 1 0 0 1 1 1 0 Aspartate carbamoyltransferase regulatory chain, metal binding domain DUF2321 PF10083.9 gi|257388007|ref|YP_003177780.1| - 0.11 12.1 0.0 0.14 11.8 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2321) AAA_13 PF13166.6 gi|257388007|ref|YP_003177780.1| - 0.12 11.1 0.0 0.12 11.0 0.0 1.0 1 0 0 1 1 1 0 AAA domain DUF2256 PF10013.9 gi|257388007|ref|YP_003177780.1| - 0.12 12.5 0.1 0.17 12.0 0.1 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2256) RNA_pol_L_2 PF13656.6 gi|257388008|ref|YP_003177781.1| - 9.8e-17 60.5 0.0 1.2e-16 60.3 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain RNA_pol_L PF01193.24 gi|257388008|ref|YP_003177781.1| - 2.1e-05 23.8 0.0 3.9e-05 23.0 0.0 1.5 1 1 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain zinc_ribbon_2 PF13240.6 gi|257388009|ref|YP_003177782.1| - 5.8e-08 32.2 19.5 0.00013 21.6 6.2 2.4 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.7 gi|257388009|ref|YP_003177782.1| - 0.012 15.6 12.0 0.031 14.3 12.0 1.7 1 1 0 1 1 1 0 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|257388009|ref|YP_003177782.1| - 0.023 14.8 11.3 0.34 11.1 1.9 2.6 2 0 0 2 2 2 0 Zinc ribbon domain Gmx_para_CXXCG PF09535.10 gi|257388009|ref|YP_003177782.1| - 0.062 12.6 3.6 2.8 7.1 0.3 2.4 1 1 0 2 2 2 0 Protein of unknown function (Gmx_para_CXXCG) Cytochrom_c3_2 PF14537.6 gi|257388009|ref|YP_003177782.1| - 0.45 11.0 11.5 1.8 9.1 2.7 2.3 1 1 1 2 2 2 0 Cytochrome c3 DUF1451 PF07295.11 gi|257388009|ref|YP_003177782.1| - 0.7 9.9 10.0 2 8.4 1.7 2.5 2 0 0 2 2 2 0 Zinc-ribbon containing domain Ribosomal_L37e PF01907.19 gi|257388009|ref|YP_003177782.1| - 1.3 9.2 4.5 8.9 6.6 0.5 2.5 2 0 0 2 2 2 0 Ribosomal protein L37e zf-RRN7 PF11781.8 gi|257388009|ref|YP_003177782.1| - 1.9 8.3 9.3 28 4.5 0.3 3.5 3 0 0 3 3 3 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 NOB1_Zn_bind PF08772.11 gi|257388009|ref|YP_003177782.1| - 2.6 8.2 8.2 2.2 8.5 0.6 2.4 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like Nudix_N_2 PF14803.6 gi|257388009|ref|YP_003177782.1| - 2.8 7.9 10.9 44 4.1 0.1 4.2 2 1 1 3 3 3 0 Nudix N-terminal zinc_ribbon_2 PF13240.6 gi|257388010|ref|YP_003177783.1| - 9.5e-06 25.2 19.9 0.00064 19.3 3.8 2.9 3 0 0 3 3 3 2 zinc-ribbon domain CAP PF00188.26 gi|257388010|ref|YP_003177783.1| - 0.017 16.0 0.0 0.03 15.1 0.0 1.4 1 0 0 1 1 1 0 Cysteine-rich secretory protein family Zn-ribbon_8 PF09723.10 gi|257388010|ref|YP_003177783.1| - 0.028 14.5 11.0 0.068 13.3 0.8 2.8 2 0 0 2 2 2 0 Zinc ribbon domain HypA PF01155.19 gi|257388010|ref|YP_003177783.1| - 0.088 12.8 7.3 1.5 8.9 1.1 2.3 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA NOB1_Zn_bind PF08772.11 gi|257388010|ref|YP_003177783.1| - 0.11 12.7 5.3 1.8 8.8 0.8 2.3 1 1 1 2 2 2 0 Nin one binding (NOB1) Zn-ribbon like Gmx_para_CXXCG PF09535.10 gi|257388010|ref|YP_003177783.1| - 0.11 11.7 2.6 4.6 6.4 0.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (Gmx_para_CXXCG) Cytochrom_c3_2 PF14537.6 gi|257388010|ref|YP_003177783.1| - 0.4 11.2 14.2 23 5.5 14.2 2.5 1 1 0 1 1 1 0 Cytochrome c3 zf-ribbon_3 PF13248.6 gi|257388010|ref|YP_003177783.1| - 1 8.9 14.4 2.8 7.5 5.0 3.1 3 0 0 3 3 3 0 zinc-ribbon domain DZR PF12773.7 gi|257388010|ref|YP_003177783.1| - 1.3 9.1 16.4 1.8 8.7 14.0 2.3 2 1 1 3 3 3 0 Double zinc ribbon DUF1451 PF07295.11 gi|257388010|ref|YP_003177783.1| - 2.2 8.3 11.4 1.2 9.2 1.5 2.3 2 0 0 2 2 2 0 Zinc-ribbon containing domain Nudix_N_2 PF14803.6 gi|257388010|ref|YP_003177783.1| - 2.5 8.1 8.8 4.9 7.2 0.2 3.7 3 1 1 4 4 4 0 Nudix N-terminal His_biosynth PF00977.21 gi|257388011|ref|YP_003177784.1| - 4e-80 268.6 0.3 4.5e-80 268.4 0.3 1.0 1 0 0 1 1 1 1 Histidine biosynthesis protein Dus PF01207.17 gi|257388011|ref|YP_003177784.1| - 3.3e-10 39.6 0.0 2.8e-06 26.6 0.0 2.1 2 0 0 2 2 2 2 Dihydrouridine synthase (Dus) ThiG PF05690.14 gi|257388011|ref|YP_003177784.1| - 8e-08 31.9 0.4 0.00015 21.2 0.1 2.1 2 0 0 2 2 2 2 Thiazole biosynthesis protein ThiG NMO PF03060.15 gi|257388011|ref|YP_003177784.1| - 1.9e-07 30.8 0.1 0.00032 20.2 0.0 2.2 2 0 0 2 2 2 2 Nitronate monooxygenase DHO_dh PF01180.21 gi|257388011|ref|YP_003177784.1| - 0.00026 20.3 0.2 0.019 14.2 0.0 2.1 2 0 0 2 2 2 1 Dihydroorotate dehydrogenase G3P_antiterm PF04309.12 gi|257388011|ref|YP_003177784.1| - 0.00048 19.6 0.0 0.0013 18.1 0.1 1.7 2 0 0 2 2 2 1 Glycerol-3-phosphate responsive antiterminator TMP-TENI PF02581.17 gi|257388011|ref|YP_003177784.1| - 0.0031 16.9 0.0 0.063 12.6 0.0 2.4 2 1 1 3 3 3 1 Thiamine monophosphate synthase IMPDH PF00478.25 gi|257388011|ref|YP_003177784.1| - 0.0053 15.8 0.4 0.011 14.8 0.1 1.6 2 0 0 2 2 2 1 IMP dehydrogenase / GMP reductase domain PcrB PF01884.17 gi|257388011|ref|YP_003177784.1| - 0.016 14.6 0.1 0.03 13.8 0.1 1.4 1 0 0 1 1 1 0 PcrB family Trp_syntA PF00290.20 gi|257388011|ref|YP_003177784.1| - 0.16 10.8 0.1 0.25 10.2 0.1 1.3 1 0 0 1 1 1 0 Tryptophan synthase alpha chain AIRS_C PF02769.22 gi|257388013|ref|YP_003177786.1| - 2.9e-39 134.7 5.9 4.6e-32 111.3 0.8 2.7 3 0 0 3 3 3 2 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|257388013|ref|YP_003177786.1| - 6.3e-39 132.5 7.2 1e-22 80.6 0.1 2.9 3 0 0 3 3 3 2 AIR synthase related protein, N-terminal domain FGAR-AT_linker PF18072.1 gi|257388013|ref|YP_003177786.1| - 6.2e-08 33.1 0.2 1.4e-07 31.9 0.2 1.7 1 0 0 1 1 1 1 Formylglycinamide ribonucleotide amidotransferase linker domain GHMP_kinases_C PF08544.13 gi|257388013|ref|YP_003177786.1| - 0.16 12.4 0.6 2.5 8.5 0.0 2.7 2 0 0 2 2 2 0 GHMP kinases C terminal Cu-oxidase_2 PF07731.14 gi|257388014|ref|YP_003177787.1| - 2.2e-31 108.4 14.4 3.7e-21 75.3 0.9 3.4 3 1 0 3 3 3 2 Multicopper oxidase Cu-oxidase_3 PF07732.15 gi|257388014|ref|YP_003177787.1| - 5e-23 81.4 6.3 6.5e-19 68.1 0.9 2.5 2 1 0 2 2 2 2 Multicopper oxidase Cu-oxidase PF00394.22 gi|257388014|ref|YP_003177787.1| - 2.3e-13 50.6 0.2 9.5e-13 48.6 0.0 1.9 2 0 0 2 2 2 1 Multicopper oxidase Cupredoxin_1 PF13473.6 gi|257388014|ref|YP_003177787.1| - 4.4e-05 23.5 0.1 0.026 14.6 0.0 3.0 2 2 0 2 2 2 2 Cupredoxin-like domain DUF4097 PF13349.6 gi|257388015|ref|YP_003177788.1| - 1.6e-18 67.0 13.6 2.7e-18 66.3 13.1 1.6 1 1 1 2 2 2 1 Putative adhesin TAT_signal PF10518.9 gi|257388015|ref|YP_003177788.1| - 0.0021 17.8 5.6 0.0055 16.5 5.6 1.6 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence LPAM_1 PF08139.12 gi|257388015|ref|YP_003177788.1| - 8.5 7.1 5.2 17 6.2 5.2 1.5 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site COX1 PF00115.20 gi|257388017|ref|YP_003177790.1| - 1.1e-142 475.9 62.6 1.1e-142 475.9 62.6 2.1 2 1 1 3 3 3 2 Cytochrome C and Quinol oxidase polypeptide I Cupin_2 PF07883.11 gi|257388019|ref|YP_003177792.1| - 4.8e-08 32.6 0.4 7.8e-08 31.9 0.4 1.3 1 0 0 1 1 1 1 Cupin domain Cupin_3 PF05899.12 gi|257388019|ref|YP_003177792.1| - 0.0019 17.9 0.2 0.0029 17.3 0.2 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF861) Cupin_6 PF12852.7 gi|257388019|ref|YP_003177792.1| - 0.0076 16.0 0.2 0.0093 15.7 0.2 1.2 1 0 0 1 1 1 1 Cupin AraC_binding PF02311.19 gi|257388019|ref|YP_003177792.1| - 0.0086 16.0 0.0 0.015 15.2 0.0 1.3 1 1 0 1 1 1 1 AraC-like ligand binding domain DUF2249 PF10006.9 gi|257388020|ref|YP_003177793.1| - 3.3e-25 87.7 0.3 3.7e-25 87.6 0.3 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) TusA PF01206.17 gi|257388020|ref|YP_003177793.1| - 0.035 13.9 0.0 0.095 12.5 0.0 1.8 1 1 0 1 1 1 0 Sulfurtransferase TusA Cupin_2 PF07883.11 gi|257388021|ref|YP_003177794.1| - 1.2e-08 34.5 0.0 1.6e-08 34.1 0.0 1.3 1 0 0 1 1 1 1 Cupin domain Pirin_C_2 PF17954.1 gi|257388021|ref|YP_003177794.1| - 0.00073 19.7 0.0 0.00092 19.3 0.0 1.1 1 0 0 1 1 1 1 Quercetinase C-terminal cupin domain AraC_binding_2 PF14525.6 gi|257388021|ref|YP_003177794.1| - 0.0066 16.1 0.2 0.0077 15.9 0.2 1.3 1 1 0 1 1 1 1 AraC-binding-like domain HutD PF05962.11 gi|257388021|ref|YP_003177794.1| - 0.081 12.9 0.0 0.095 12.7 0.0 1.1 1 0 0 1 1 1 0 HutD Nsp3_PL2pro PF12124.8 gi|257388021|ref|YP_003177794.1| - 0.14 12.0 1.6 0.17 11.7 0.1 1.9 2 0 0 2 2 2 0 Coronavirus polyprotein cleavage domain GlutR_dimer PF00745.20 gi|257388022|ref|YP_003177795.1| - 4.4e-13 49.5 1.2 5.4e-13 49.2 1.2 1.0 1 0 0 1 1 1 1 Glutamyl-tRNAGlu reductase, dimerisation domain RNA_pol_A_CTD PF03118.15 gi|257388022|ref|YP_003177795.1| - 0.042 13.6 0.1 0.062 13.1 0.1 1.3 1 0 0 1 1 1 0 Bacterial RNA polymerase, alpha chain C terminal domain DUF2249 PF10006.9 gi|257388023|ref|YP_003177796.1| - 2.8e-14 52.7 0.1 3.6e-14 52.4 0.1 1.2 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) TusA PF01206.17 gi|257388023|ref|YP_003177796.1| - 0.013 15.3 0.0 0.015 15.1 0.0 1.2 1 0 0 1 1 1 0 Sulfurtransferase TusA COX1 PF00115.20 gi|257388024|ref|YP_003177797.1| - 9.6e-05 21.4 42.6 0.024 13.5 10.8 3.6 1 1 0 2 2 2 2 Cytochrome C and Quinol oxidase polypeptide I VirB8 PF04335.13 gi|257388024|ref|YP_003177797.1| - 1.3 8.8 0.0 1.3 8.8 0.0 3.3 3 0 0 3 3 3 0 VirB8 protein ECF_trnsprt PF12822.7 gi|257388025|ref|YP_003177798.1| - 0.01 16.0 3.6 0.013 15.6 3.6 1.1 1 0 0 1 1 1 1 ECF transporter, substrate-specific component Jagunal PF07086.12 gi|257388025|ref|YP_003177798.1| - 0.062 13.4 0.6 0.07 13.2 0.6 1.1 1 0 0 1 1 1 0 Jagunal, ER re-organisation during oogenesis CPP1-like PF11833.8 gi|257388025|ref|YP_003177798.1| - 0.37 10.4 4.7 1.3 8.6 4.7 1.8 1 1 0 1 1 1 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like DUF4199 PF13858.6 gi|257388025|ref|YP_003177798.1| - 1.1 9.6 9.3 0.066 13.6 2.3 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF4199) HTH_20 PF12840.7 gi|257388026|ref|YP_003177799.1| - 2.4e-10 40.3 0.4 3.6e-10 39.7 0.4 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|257388026|ref|YP_003177799.1| - 1.2e-06 28.2 0.1 2.1e-06 27.4 0.1 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|257388026|ref|YP_003177799.1| - 2.4e-05 24.1 0.0 3.7e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_7 PF02796.15 gi|257388026|ref|YP_003177799.1| - 0.00021 21.3 0.0 0.00035 20.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase Sigma70_r4 PF04545.16 gi|257388026|ref|YP_003177799.1| - 0.00084 18.8 0.0 0.0015 18.0 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 MarR_2 PF12802.7 gi|257388026|ref|YP_003177799.1| - 0.0043 16.9 0.1 0.0065 16.3 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|257388026|ref|YP_003177799.1| - 0.0061 16.4 0.1 0.0094 15.8 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.6 gi|257388026|ref|YP_003177799.1| - 0.075 13.0 0.0 0.13 12.3 0.0 1.4 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain HTH_24 PF13412.6 gi|257388026|ref|YP_003177799.1| - 0.11 12.1 0.1 0.18 11.4 0.1 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding Rrf2 PF02082.20 gi|257388026|ref|YP_003177799.1| - 0.16 12.4 0.0 0.88 10.0 0.0 1.9 2 0 0 2 2 2 0 Transcriptional regulator COX1 PF00115.20 gi|257388027|ref|YP_003177800.1| - 1.4e-57 195.5 51.0 1.4e-57 195.5 51.0 1.9 2 0 0 2 2 2 1 Cytochrome C and Quinol oxidase polypeptide I DUF2871 PF11070.8 gi|257388027|ref|YP_003177800.1| - 0.011 16.0 1.1 0.011 16.0 1.1 2.8 2 0 0 2 2 2 0 Protein of unknown function (DUF2871) TraB PF01963.17 gi|257388028|ref|YP_003177801.1| - 6.1e-06 26.3 0.0 0.037 13.9 0.0 2.1 2 0 0 2 2 2 2 TraB family DUF2171 PF09939.9 gi|257388029|ref|YP_003177802.1| - 0.0038 17.5 1.5 0.009 16.3 1.5 1.6 1 1 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2171) PRC PF05239.16 gi|257388029|ref|YP_003177802.1| - 0.035 14.2 0.1 0.067 13.3 0.1 1.4 1 0 0 1 1 1 0 PRC-barrel domain PaaB PF06243.11 gi|257388030|ref|YP_003177803.1| - 3.3e-08 33.7 0.4 4.2e-08 33.3 0.4 1.1 1 0 0 1 1 1 1 Phenylacetic acid degradation B Radical_SAM PF04055.21 gi|257388031|ref|YP_003177804.1| - 1.7e-21 77.4 0.0 1.3e-20 74.4 0.0 2.0 2 0 0 2 2 2 1 Radical SAM superfamily Fer4_12 PF13353.6 gi|257388031|ref|YP_003177804.1| - 2.8e-10 40.6 0.0 5.4e-10 39.7 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|257388031|ref|YP_003177804.1| - 1.4e-05 25.2 0.0 5.2e-05 23.4 0.0 1.9 2 0 0 2 2 2 1 4Fe-4S single cluster domain SPASM PF13186.6 gi|257388031|ref|YP_003177804.1| - 5.1e-05 23.7 0.0 0.00013 22.4 0.0 1.7 1 0 0 1 1 1 1 Iron-sulfur cluster-binding domain BRCC36_C PF18110.1 gi|257388031|ref|YP_003177804.1| - 0.13 12.5 0.0 0.24 11.6 0.0 1.4 1 0 0 1 1 1 0 BRCC36 C-terminal helical domain Methyltransf_25 PF13649.6 gi|257388032|ref|YP_003177805.1| - 2e-15 57.3 0.1 4.7e-15 56.1 0.1 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|257388032|ref|YP_003177805.1| - 4.2e-12 46.7 0.0 7e-12 46.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|257388032|ref|YP_003177805.1| - 1.5e-10 41.1 0.0 9.8e-10 38.5 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|257388032|ref|YP_003177805.1| - 3.5e-09 37.2 0.1 6.7e-09 36.3 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|257388032|ref|YP_003177805.1| - 1.4e-07 31.5 0.0 1.9e-07 31.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|257388032|ref|YP_003177805.1| - 5.5e-07 29.3 0.0 9.9e-07 28.5 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase small domain Ubie_methyltran PF01209.18 gi|257388032|ref|YP_003177805.1| - 8.3e-05 22.0 0.0 0.0034 16.8 0.0 2.1 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family CMAS PF02353.20 gi|257388032|ref|YP_003177805.1| - 0.00017 21.0 0.0 0.00024 20.5 0.0 1.3 1 1 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_9 PF08003.11 gi|257388032|ref|YP_003177805.1| - 0.0035 16.3 0.0 0.0049 15.8 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) PCMT PF01135.19 gi|257388032|ref|YP_003177805.1| - 0.012 15.4 0.0 0.02 14.7 0.0 1.3 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MetW PF07021.12 gi|257388032|ref|YP_003177805.1| - 0.014 15.0 0.0 0.021 14.4 0.0 1.3 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW RrnaAD PF00398.20 gi|257388032|ref|YP_003177805.1| - 0.04 13.0 0.0 0.062 12.4 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase PrmA PF06325.13 gi|257388032|ref|YP_003177805.1| - 0.051 13.0 0.0 0.091 12.1 0.0 1.4 1 0 0 1 1 1 0 Ribosomal protein L11 methyltransferase (PrmA) NodS PF05401.11 gi|257388032|ref|YP_003177805.1| - 0.058 13.0 0.0 0.083 12.5 0.0 1.2 1 0 0 1 1 1 0 Nodulation protein S (NodS) Methyltransf_2 PF00891.18 gi|257388032|ref|YP_003177805.1| - 0.059 12.7 0.0 0.11 11.8 0.0 1.4 1 0 0 1 1 1 0 O-methyltransferase domain PHP_C PF13263.6 gi|257388033|ref|YP_003177806.1| - 1.2e-23 82.6 0.9 4.4e-23 80.8 0.3 2.1 2 0 0 2 2 2 1 PHP-associated PHP PF02811.19 gi|257388033|ref|YP_003177806.1| - 8.6e-08 32.7 0.0 1e-07 32.4 0.0 1.3 1 1 0 1 1 1 1 PHP domain Asn_synthase PF00733.21 gi|257388034|ref|YP_003177807.1| - 3.2e-30 106.0 4.5 1.2e-18 67.9 2.2 2.1 1 1 1 2 2 2 2 Asparagine synthase TB2_DP1_HVA22 PF03134.19 gi|257388035|ref|YP_003177808.1| - 0.25 11.3 1.5 1 9.3 0.0 2.3 3 0 0 3 3 3 0 TB2/DP1, HVA22 family TF_Zn_Ribbon PF08271.12 gi|257388036|ref|YP_003177809.1| - 0.0012 18.3 0.3 0.45 10.1 0.0 2.5 2 0 0 2 2 2 2 TFIIB zinc-binding zf-C2H2_3 PF13878.6 gi|257388036|ref|YP_003177809.1| - 0.0021 17.8 0.3 0.077 12.8 0.0 2.5 2 0 0 2 2 2 1 zinc-finger of acetyl-transferase ESCO zf-IS66 PF13005.7 gi|257388036|ref|YP_003177809.1| - 0.0079 16.6 1.3 1 9.8 0.2 2.3 2 0 0 2 2 2 1 zinc-finger binding domain of transposase IS66 zf-ribbon_3 PF13248.6 gi|257388036|ref|YP_003177809.1| - 0.0089 15.4 0.6 1.6 8.3 0.0 2.4 2 0 0 2 2 2 1 zinc-ribbon domain zf-TFIIB PF13453.6 gi|257388036|ref|YP_003177809.1| - 0.0093 15.3 0.6 0.34 10.3 0.1 2.4 2 0 0 2 2 2 1 Transcription factor zinc-finger Zn_Tnp_IS1595 PF12760.7 gi|257388036|ref|YP_003177809.1| - 0.01 15.8 1.0 2.1 8.4 0.1 2.3 1 1 1 2 2 2 0 Transposase zinc-ribbon domain YhfH PF14149.6 gi|257388036|ref|YP_003177809.1| - 0.019 14.9 0.4 5.4 7.1 0.1 2.3 2 0 0 2 2 2 0 YhfH-like protein zf-NADH-PPase PF09297.11 gi|257388036|ref|YP_003177809.1| - 0.03 14.0 2.7 3.8 7.3 0.3 2.5 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain A2L_zn_ribbon PF08792.10 gi|257388036|ref|YP_003177809.1| - 0.033 13.9 0.4 7.1 6.5 0.0 2.4 2 0 0 2 2 2 0 A2L zinc ribbon domain Zn-ribbon_8 PF09723.10 gi|257388036|ref|YP_003177809.1| - 0.034 14.2 0.4 8.6 6.6 0.0 2.3 2 0 0 2 2 2 0 Zinc ribbon domain Nudix_N_2 PF14803.6 gi|257388036|ref|YP_003177809.1| - 0.035 14.0 3.5 1.4 8.9 0.2 3.0 3 0 0 3 3 3 0 Nudix N-terminal zinc_ribbon_2 PF13240.6 gi|257388036|ref|YP_003177809.1| - 0.04 13.6 0.7 4.9 7.0 0.0 2.5 2 0 0 2 2 2 0 zinc-ribbon domain zf-tcix PF14952.6 gi|257388036|ref|YP_003177809.1| - 0.044 13.4 1.4 5 6.8 0.1 2.2 2 0 0 2 2 2 0 Putative treble-clef, zinc-finger, Zn-binding DUF35_N PF12172.8 gi|257388036|ref|YP_003177809.1| - 0.046 13.6 2.5 2.3 8.2 0.3 2.3 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DZR PF12773.7 gi|257388036|ref|YP_003177809.1| - 0.11 12.5 1.5 0.59 10.2 1.5 1.9 1 1 0 1 1 1 0 Double zinc ribbon Methyltransf_13 PF08421.11 gi|257388036|ref|YP_003177809.1| - 0.13 12.5 0.1 0.58 10.4 0.0 2.1 2 0 0 2 2 2 0 Putative zinc binding domain UPF0547 PF10571.9 gi|257388036|ref|YP_003177809.1| - 0.19 11.8 2.5 4.8 7.4 0.1 2.2 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 zf-Mss51 PF13824.6 gi|257388036|ref|YP_003177809.1| - 0.27 11.3 2.2 8.5 6.6 0.1 2.5 2 1 0 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 DNA_ligase_ZBD PF03119.16 gi|257388036|ref|YP_003177809.1| - 0.36 10.9 3.2 12 6.0 0.1 2.8 2 1 0 2 2 2 0 NAD-dependent DNA ligase C4 zinc finger domain NUDIX PF00293.28 gi|257388037|ref|YP_003177810.1| - 2.4e-14 53.5 0.5 3e-14 53.2 0.5 1.1 1 0 0 1 1 1 1 NUDIX domain TFIIB PF00382.19 gi|257388038|ref|YP_003177811.1| - 3.2e-42 142.4 0.1 7.2e-20 70.8 0.0 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|257388038|ref|YP_003177811.1| - 1.7e-18 65.8 4.3 3.9e-18 64.7 4.3 1.7 1 0 0 1 1 1 1 TFIIB zinc-binding A2L_zn_ribbon PF08792.10 gi|257388038|ref|YP_003177811.1| - 0.0012 18.5 0.4 0.002 17.8 0.4 1.4 1 0 0 1 1 1 1 A2L zinc ribbon domain Sigma70_r4 PF04545.16 gi|257388038|ref|YP_003177811.1| - 0.0062 16.0 0.1 0.0062 16.0 0.1 3.5 5 0 0 5 5 5 1 Sigma-70, region 4 Cyclin_C PF02984.19 gi|257388038|ref|YP_003177811.1| - 0.017 15.2 0.0 0.68 10.0 0.0 2.2 2 0 0 2 2 2 0 Cyclin, C-terminal domain DZR PF12773.7 gi|257388038|ref|YP_003177811.1| - 0.019 15.0 0.3 0.032 14.3 0.3 1.3 1 0 0 1 1 1 0 Double zinc ribbon DUF1272 PF06906.11 gi|257388038|ref|YP_003177811.1| - 0.023 14.8 0.7 0.059 13.5 0.0 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1272) OrfB_Zn_ribbon PF07282.11 gi|257388038|ref|YP_003177811.1| - 0.045 13.7 0.9 0.096 12.6 0.9 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain zf-RRN7 PF11781.8 gi|257388038|ref|YP_003177811.1| - 0.11 12.2 2.0 0.17 11.6 2.0 1.3 1 0 0 1 1 1 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zf-ribbon_3 PF13248.6 gi|257388038|ref|YP_003177811.1| - 0.13 11.7 3.2 2.6 7.6 3.3 2.3 1 1 0 1 1 1 0 zinc-ribbon domain DUF4648 PF15505.6 gi|257388038|ref|YP_003177811.1| - 0.14 13.1 0.1 0.47 11.4 0.0 1.9 2 0 0 2 2 1 0 Domain of unknown function (DUF4648) zf_Rg PF17915.1 gi|257388038|ref|YP_003177811.1| - 0.14 11.6 0.5 0.28 10.6 0.5 1.5 1 0 0 1 1 1 0 Reverse gyrase zinc finger Zn-ribbon_8 PF09723.10 gi|257388038|ref|YP_003177811.1| - 0.24 11.6 5.1 0.94 9.6 0.7 2.4 1 1 2 3 3 3 0 Zinc ribbon domain zf_UBZ PF18439.1 gi|257388038|ref|YP_003177811.1| - 0.97 9.1 3.3 8.3 6.1 0.2 2.5 1 1 1 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-C4_Topoisom PF01396.19 gi|257388038|ref|YP_003177811.1| - 1.1 9.1 3.3 0.35 10.7 0.2 1.7 1 1 1 2 2 2 0 Topoisomerase DNA binding C4 zinc finger Nudix_N_2 PF14803.6 gi|257388038|ref|YP_003177811.1| - 1.6 8.7 3.8 7.1 6.6 3.6 2.1 1 1 1 2 2 2 0 Nudix N-terminal Glu-tRNAGln PF02686.15 gi|257388039|ref|YP_003177812.1| - 3.3e-15 56.1 2.4 5.2e-15 55.5 2.4 1.3 1 0 0 1 1 1 1 Glu-tRNAGln amidotransferase C subunit Amidase PF01425.21 gi|257388040|ref|YP_003177813.1| - 6.3e-144 480.3 1.4 7.4e-144 480.1 1.4 1.0 1 0 0 1 1 1 1 Amidase Peptidase_M48 PF01435.18 gi|257388041|ref|YP_003177814.1| - 1.6e-24 86.8 0.0 8.1e-24 84.5 0.0 1.9 1 1 0 1 1 1 1 Peptidase family M48 Peptidase_M56 PF05569.11 gi|257388041|ref|YP_003177814.1| - 1.5e-05 24.3 0.0 2.7e-05 23.5 0.0 1.3 1 0 0 1 1 1 1 BlaR1 peptidase M56 DUF45 PF01863.17 gi|257388041|ref|YP_003177814.1| - 0.045 13.8 0.0 0.095 12.7 0.0 1.5 1 1 0 1 1 1 0 Protein of unknown function DUF45 DUF2268 PF10026.9 gi|257388041|ref|YP_003177814.1| - 0.27 10.8 0.0 0.39 10.2 0.0 1.2 1 0 0 1 1 1 0 Predicted Zn-dependent protease (DUF2268) PIG-L PF02585.17 gi|257388042|ref|YP_003177815.1| - 1.1e-25 90.8 0.2 1.8e-25 90.0 0.2 1.4 1 0 0 1 1 1 1 GlcNAc-PI de-N-acetylase Glyco_transf_4 PF13439.6 gi|257388042|ref|YP_003177815.1| - 0.016 15.2 0.2 0.047 13.7 0.1 1.7 2 0 0 2 2 2 0 Glycosyltransferase Family 4 Glycos_transf_1 PF00534.20 gi|257388043|ref|YP_003177816.1| - 5.6e-27 94.4 0.0 1.9e-26 92.7 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|257388043|ref|YP_003177816.1| - 3e-26 92.4 1.1 5.1e-26 91.7 0.6 1.6 2 0 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.6 gi|257388043|ref|YP_003177816.1| - 2.9e-22 79.5 0.0 9.7e-21 74.6 0.0 2.5 3 0 0 3 3 3 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|257388043|ref|YP_003177816.1| - 9.1e-16 58.7 6.6 3.7e-15 56.7 2.1 2.2 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|257388043|ref|YP_003177816.1| - 2.2e-05 24.8 0.0 9.2e-05 22.8 0.0 2.0 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|257388043|ref|YP_003177816.1| - 0.00088 19.3 0.0 0.0027 17.7 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferase 4-like Glyco_trans_1_4 PF13692.6 gi|257388044|ref|YP_003177817.1| - 6.4e-21 75.2 0.0 1.5e-18 67.5 0.0 3.0 2 1 0 2 2 2 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|257388044|ref|YP_003177817.1| - 2e-19 69.8 0.0 1.3e-18 67.1 0.0 2.3 2 1 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|257388044|ref|YP_003177817.1| - 2.6e-18 66.6 0.9 1.2e-16 61.2 0.1 2.5 1 1 1 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.6 gi|257388044|ref|YP_003177817.1| - 4.2e-14 52.7 0.0 8.1e-14 51.8 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|257388044|ref|YP_003177817.1| - 2.4e-10 41.1 1.6 3.2e-08 34.2 0.2 2.5 1 1 1 2 2 2 2 Glycosyl transferase 4-like domain Rpr2 PF04032.16 gi|257388045|ref|YP_003177818.1| - 2.2e-11 43.9 0.0 2.8e-11 43.5 0.0 1.1 1 0 0 1 1 1 1 RNAse P Rpr2/Rpp21/SNM1 subunit domain zf-RING_7 PF02591.15 gi|257388045|ref|YP_003177818.1| - 0.12 12.6 0.8 0.12 12.6 0.8 1.7 2 0 0 2 2 2 0 C4-type zinc ribbon domain PGBA_C PF15437.6 gi|257388045|ref|YP_003177818.1| - 0.59 10.5 4.4 0.78 10.1 4.4 1.2 1 0 0 1 1 1 0 Plasminogen-binding protein pgbA C-terminal CRS1_YhbY PF01985.21 gi|257388046|ref|YP_003177819.1| - 1.4e-10 41.2 0.0 1.6e-10 41.0 0.0 1.0 1 0 0 1 1 1 1 CRS1 / YhbY (CRM) domain MS_channel PF00924.18 gi|257388047|ref|YP_003177820.1| - 1.4e-53 181.5 0.1 2e-53 181.0 0.1 1.2 1 0 0 1 1 1 1 Mechanosensitive ion channel SRR PF07709.11 gi|257388048|ref|YP_003177821.1| - 0.12 12.8 0.9 12 6.8 0.0 3.1 2 1 1 3 3 3 0 Seven Residue Repeat DUF3948 PF13134.6 gi|257388049|ref|YP_003177822.1| - 0.18 11.5 0.1 0.18 11.5 0.1 2.4 2 0 0 2 2 2 0 Protein of unknown function (DUF3948) MARVEL PF01284.23 gi|257388049|ref|YP_003177822.1| - 0.37 10.8 12.9 0.6 10.1 13.0 1.3 1 1 0 1 1 1 0 Membrane-associating domain RmuC PF02646.16 gi|257388050|ref|YP_003177823.1| - 0.0011 18.2 0.6 0.0012 18.0 0.6 1.1 1 0 0 1 1 1 1 RmuC family DUF812 PF05667.11 gi|257388050|ref|YP_003177823.1| - 0.0014 17.6 0.8 0.0017 17.3 0.8 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF812) Herpes_UL6 PF01763.16 gi|257388050|ref|YP_003177823.1| - 0.0027 16.3 0.2 0.0029 16.2 0.2 1.0 1 0 0 1 1 1 1 Herpesvirus UL6 like BAR PF03114.18 gi|257388050|ref|YP_003177823.1| - 0.0043 16.7 0.7 0.0053 16.4 0.7 1.1 1 0 0 1 1 1 1 BAR domain DUF3450 PF11932.8 gi|257388050|ref|YP_003177823.1| - 0.0086 15.4 1.1 0.011 15.1 1.1 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3450) DegS PF05384.11 gi|257388050|ref|YP_003177823.1| - 0.01 15.4 1.3 0.012 15.1 1.3 1.1 1 0 0 1 1 1 0 Sensor protein DegS DUF1664 PF07889.12 gi|257388050|ref|YP_003177823.1| - 0.014 15.4 1.1 0.017 15.1 1.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) TPR_MLP1_2 PF07926.12 gi|257388050|ref|YP_003177823.1| - 0.02 15.0 1.3 0.031 14.3 1.3 1.3 1 0 0 1 1 1 0 TPR/MLP1/MLP2-like protein Laminin_I PF06008.14 gi|257388050|ref|YP_003177823.1| - 0.022 14.4 1.2 0.029 14.1 1.2 1.0 1 0 0 1 1 1 0 Laminin Domain I Med9 PF07544.13 gi|257388050|ref|YP_003177823.1| - 0.025 14.7 1.3 0.04 14.0 1.3 1.4 1 0 0 1 1 1 0 RNA polymerase II transcription mediator complex subunit 9 DUF2863 PF11062.8 gi|257388050|ref|YP_003177823.1| - 0.027 12.9 0.1 0.031 12.7 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2863) DUF948 PF06103.11 gi|257388050|ref|YP_003177823.1| - 0.029 14.6 1.1 0.062 13.6 1.1 1.6 1 1 0 1 1 1 0 Bacterial protein of unknown function (DUF948) T4SS PF07996.11 gi|257388050|ref|YP_003177823.1| - 0.039 14.4 0.2 0.96 9.8 0.1 2.0 1 1 1 2 2 2 0 Type IV secretion system proteins BLOC1_2 PF10046.9 gi|257388050|ref|YP_003177823.1| - 0.048 14.0 0.4 0.07 13.4 0.4 1.3 1 0 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 YabA PF06156.13 gi|257388050|ref|YP_003177823.1| - 0.055 14.1 0.9 0.066 13.9 0.9 1.1 1 0 0 1 1 1 0 Initiation control protein YabA TolA_bind_tri PF16331.5 gi|257388050|ref|YP_003177823.1| - 0.057 13.5 3.0 0.14 12.2 3.0 1.6 1 1 0 1 1 1 0 TolA binding protein trimerisation WXG100 PF06013.12 gi|257388050|ref|YP_003177823.1| - 0.068 13.4 1.0 0.33 11.2 0.5 2.3 1 1 1 2 2 2 0 Proteins of 100 residues with WXG TEX13 PF15186.6 gi|257388050|ref|YP_003177823.1| - 0.072 12.8 1.4 0.097 12.4 1.4 1.1 1 0 0 1 1 1 0 Testis-expressed sequence 13 protein family Syntaxin-6_N PF09177.11 gi|257388050|ref|YP_003177823.1| - 0.082 13.5 0.6 0.13 12.9 0.6 1.3 1 0 0 1 1 1 0 Syntaxin 6, N-terminal DUF1759 PF03564.15 gi|257388050|ref|YP_003177823.1| - 0.085 12.8 0.2 0.1 12.5 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1759) Spc7 PF08317.11 gi|257388050|ref|YP_003177823.1| - 0.089 11.7 2.0 0.1 11.5 2.0 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein DUF5339 PF17274.2 gi|257388050|ref|YP_003177823.1| - 0.11 13.4 0.5 0.24 12.3 0.2 1.7 2 0 0 2 2 2 0 Family of unknown function (DUF5339) Rx_N PF18052.1 gi|257388050|ref|YP_003177823.1| - 0.11 12.8 4.0 0.89 9.9 3.9 2.2 1 1 0 1 1 1 0 Rx N-terminal domain DHR10 PF18595.1 gi|257388050|ref|YP_003177823.1| - 0.13 12.3 5.1 0.18 11.9 5.1 1.1 1 0 0 1 1 1 0 Designed helical repeat protein 10 domain Prominin PF05478.11 gi|257388050|ref|YP_003177823.1| - 0.15 10.0 0.2 0.16 9.9 0.2 1.0 1 0 0 1 1 1 0 Prominin PspB PF06667.12 gi|257388050|ref|YP_003177823.1| - 0.16 12.0 1.7 2.4 8.2 0.2 2.2 1 1 1 2 2 2 0 Phage shock protein B Zw10 PF06248.13 gi|257388050|ref|YP_003177823.1| - 0.19 10.3 0.4 0.2 10.2 0.4 1.0 1 0 0 1 1 1 0 Centromere/kinetochore Zw10 TMPIT PF07851.13 gi|257388050|ref|YP_003177823.1| - 0.25 10.6 0.2 0.29 10.4 0.2 1.1 1 0 0 1 1 1 0 TMPIT-like protein Packaging_FI PF14000.6 gi|257388050|ref|YP_003177823.1| - 0.25 11.8 7.6 0.41 11.1 7.6 1.5 1 1 0 1 1 1 0 DNA packaging protein FI XhlA PF10779.9 gi|257388050|ref|YP_003177823.1| - 0.78 10.0 5.1 6.1 7.1 0.2 2.2 1 1 1 2 2 2 0 Haemolysin XhlA HalX PF08663.10 gi|257388050|ref|YP_003177823.1| - 2 8.8 6.8 49 4.3 6.8 2.4 1 1 0 1 1 1 0 HalX domain CoA_binding_2 PF13380.6 gi|257388051|ref|YP_003177824.1| - 6.9e-41 139.4 0.1 7.9e-41 139.2 0.1 1.0 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.19 gi|257388051|ref|YP_003177824.1| - 4.9e-05 23.9 0.0 7.1e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 CoA binding domain TusA PF01206.17 gi|257388051|ref|YP_003177824.1| - 0.011 15.5 0.0 0.023 14.5 0.0 1.5 1 0 0 1 1 1 0 Sulfurtransferase TusA ATPase PF06745.13 gi|257388052|ref|YP_003177825.1| - 1.6e-07 30.9 0.1 3.1e-07 30.0 0.1 1.4 1 1 0 1 1 1 1 KaiC DUF835 PF05763.12 gi|257388052|ref|YP_003177825.1| - 0.00019 21.2 0.0 0.0004 20.1 0.0 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF835) PAXNEB PF05625.11 gi|257388052|ref|YP_003177825.1| - 0.0027 16.9 0.0 0.0042 16.3 0.0 1.2 1 0 0 1 1 1 1 PAXNEB protein Fic PF02661.18 gi|257388053|ref|YP_003177826.1| - 2.2e-19 70.1 0.0 6.4e-19 68.7 0.0 1.8 1 0 0 1 1 1 1 Fic/DOC family Fic_N PF13784.6 gi|257388053|ref|YP_003177826.1| - 1.6e-17 63.3 0.0 9.8e-17 60.8 0.0 2.2 2 0 0 2 2 2 1 Fic/DOC family N-terminal MarR_2 PF12802.7 gi|257388053|ref|YP_003177826.1| - 8.9e-05 22.3 0.1 0.00035 20.4 0.1 2.1 1 0 0 1 1 1 1 MarR family HTH_13 PF11972.8 gi|257388053|ref|YP_003177826.1| - 0.00047 20.2 0.0 0.001 19.1 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain DUF1403 PF07183.11 gi|257388053|ref|YP_003177826.1| - 0.0011 18.5 0.2 0.0021 17.7 0.0 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF1403) HTH_1 PF00126.27 gi|257388053|ref|YP_003177826.1| - 0.0093 15.9 0.0 0.031 14.2 0.0 1.8 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family HTH_24 PF13412.6 gi|257388053|ref|YP_003177826.1| - 0.036 13.6 0.0 0.069 12.7 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_29 PF13551.6 gi|257388053|ref|YP_003177826.1| - 0.052 13.6 0.0 0.17 11.9 0.0 2.0 1 1 0 1 1 1 0 Winged helix-turn helix TrmB PF01978.19 gi|257388053|ref|YP_003177826.1| - 0.11 12.4 0.0 0.26 11.2 0.0 1.6 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB FtsK_gamma PF09397.10 gi|257388053|ref|YP_003177826.1| - 0.12 12.2 0.1 0.42 10.4 0.1 1.9 1 1 0 1 1 1 0 Ftsk gamma domain HEAT_2 PF13646.6 gi|257388054|ref|YP_003177827.1| - 1.2e-18 67.3 17.5 5.3e-08 33.2 5.4 3.7 1 1 2 3 3 3 3 HEAT repeats HEAT PF02985.22 gi|257388054|ref|YP_003177827.1| - 1.6e-10 40.3 4.8 0.056 13.7 0.0 5.9 6 0 0 6 6 6 3 HEAT repeat Cnd1 PF12717.7 gi|257388054|ref|YP_003177827.1| - 1.5e-06 28.4 0.0 0.071 13.1 0.0 3.3 1 1 2 3 3 3 3 non-SMC mitotic condensation complex subunit 1 HEAT_EZ PF13513.6 gi|257388054|ref|YP_003177827.1| - 1.5e-06 28.6 12.9 0.28 11.8 0.0 5.2 2 1 3 5 5 5 3 HEAT-like repeat Adaptin_N PF01602.20 gi|257388054|ref|YP_003177827.1| - 0.00014 20.6 0.0 7.8 4.9 0.0 2.7 1 1 0 2 2 2 1 Adaptin N terminal region zf-ribbon_3 PF13248.6 gi|257388054|ref|YP_003177827.1| - 0.0018 17.6 6.2 0.0034 16.7 6.2 1.4 1 0 0 1 1 1 1 zinc-ribbon domain DZR PF12773.7 gi|257388054|ref|YP_003177827.1| - 0.0035 17.3 1.4 0.0064 16.5 1.4 1.4 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|257388054|ref|YP_003177827.1| - 0.012 15.3 5.0 0.027 14.2 5.0 1.6 1 0 0 1 1 1 0 zinc-ribbon domain DUF2019 PF09450.10 gi|257388054|ref|YP_003177827.1| - 0.064 13.2 0.3 15 5.6 0.0 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF2019) Zn-ribbon_8 PF09723.10 gi|257388054|ref|YP_003177827.1| - 0.45 10.7 5.9 2.3 8.4 0.1 2.4 1 1 1 2 2 2 0 Zinc ribbon domain zf-RING_7 PF02591.15 gi|257388054|ref|YP_003177827.1| - 0.51 10.6 2.6 40 4.5 0.4 3.3 3 0 0 3 3 3 0 C4-type zinc ribbon domain UPF0547 PF10571.9 gi|257388054|ref|YP_003177827.1| - 1.2 9.3 5.2 2.1 8.5 0.1 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 Pyr_redox_2 PF07992.14 gi|257388055|ref|YP_003177828.1| - 6.6e-07 28.9 0.0 1.3e-06 27.9 0.0 1.5 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|257388055|ref|YP_003177828.1| - 1.6e-05 23.8 0.0 0.016 14.0 0.0 2.1 2 0 0 2 2 2 2 HI0933-like protein FAD_oxidored PF12831.7 gi|257388055|ref|YP_003177828.1| - 0.0001 21.8 0.9 0.0047 16.3 0.2 2.0 2 0 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|257388055|ref|YP_003177828.1| - 0.0005 20.2 0.0 0.0011 19.1 0.0 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.6 gi|257388055|ref|YP_003177828.1| - 0.00081 18.7 0.0 0.041 13.1 0.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|257388055|ref|YP_003177828.1| - 0.00087 18.6 0.2 0.002 17.5 0.0 1.7 2 0 0 2 2 2 1 FAD binding domain FAD_binding_2 PF00890.24 gi|257388055|ref|YP_003177828.1| - 0.0015 17.7 0.1 0.0036 16.5 0.1 1.6 1 0 0 1 1 1 1 FAD binding domain GIDA PF01134.22 gi|257388055|ref|YP_003177828.1| - 0.0033 16.6 0.0 0.005 16.0 0.0 1.2 1 0 0 1 1 1 1 Glucose inhibited division protein A Thi4 PF01946.17 gi|257388055|ref|YP_003177828.1| - 0.0061 15.8 0.0 0.012 14.9 0.0 1.5 1 0 0 1 1 1 1 Thi4 family NAD_binding_9 PF13454.6 gi|257388055|ref|YP_003177828.1| - 0.027 14.5 1.1 1.7 8.6 0.0 2.8 3 0 0 3 3 3 0 FAD-NAD(P)-binding DAO PF01266.24 gi|257388055|ref|YP_003177828.1| - 0.036 13.7 0.4 0.036 13.7 0.4 2.4 1 1 1 2 2 2 0 FAD dependent oxidoreductase Lycopene_cycl PF05834.12 gi|257388055|ref|YP_003177828.1| - 0.06 12.4 0.2 0.23 10.5 0.1 1.9 1 1 1 2 2 2 0 Lycopene cyclase protein Pyr_redox PF00070.27 gi|257388055|ref|YP_003177828.1| - 0.1 13.2 0.0 0.25 11.9 0.0 1.7 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Trp_halogenase PF04820.14 gi|257388055|ref|YP_003177828.1| - 1.7 7.4 3.1 12 4.6 0.0 2.1 1 1 1 2 2 2 0 Tryptophan halogenase SSTK-IP PF15836.5 gi|257388056|ref|YP_003177829.1| - 0.074 13.2 0.0 0.13 12.4 0.0 1.3 1 0 0 1 1 1 0 SSTK-interacting protein, TSSK6-activating co-chaperone protein DUF981 PF06168.11 gi|257388057|ref|YP_003177830.1| - 0.0012 18.8 5.1 0.0019 18.2 5.1 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF981) DUF3084 PF11283.8 gi|257388057|ref|YP_003177830.1| - 0.0094 15.9 2.2 0.023 14.7 1.8 2.0 1 1 0 1 1 1 1 Protein of unknown function (DUF3084) Tmemb_170 PF10190.9 gi|257388057|ref|YP_003177830.1| - 0.011 16.0 4.7 0.014 15.8 4.7 1.1 1 0 0 1 1 1 0 Putative transmembrane protein 170 Saf_2TM PF18303.1 gi|257388057|ref|YP_003177830.1| - 0.033 13.8 0.3 0.033 13.8 0.3 2.1 1 1 1 2 2 2 0 SAVED-fused 2TM effector domain PTR2 PF00854.21 gi|257388057|ref|YP_003177830.1| - 0.051 12.4 2.3 0.052 12.4 2.3 1.1 1 0 0 1 1 1 0 POT family MIG-14_Wnt-bd PF06664.12 gi|257388057|ref|YP_003177830.1| - 0.27 10.4 1.9 0.31 10.2 1.9 1.1 1 0 0 1 1 1 0 Wnt-binding factor required for Wnt secretion CBP_BcsF PF11120.8 gi|257388057|ref|YP_003177830.1| - 0.42 10.8 2.7 0.71 10.0 0.2 2.1 2 0 0 2 2 2 0 Cellulose biosynthesis protein BcsF Vma12 PF11712.8 gi|257388057|ref|YP_003177830.1| - 0.68 10.0 2.2 0.91 9.6 2.2 1.2 1 0 0 1 1 1 0 Endoplasmic reticulum-based factor for assembly of V-ATPase S_4TM PF18159.1 gi|257388057|ref|YP_003177830.1| - 5.5 6.2 4.8 1 8.6 0.2 1.7 1 1 1 2 2 2 0 SMODS-associating 4TM effector domain DGC PF08859.11 gi|257388059|ref|YP_003177832.1| - 3.5e-34 117.1 0.1 4e-34 116.9 0.1 1.0 1 0 0 1 1 1 1 DGC domain HhH-GPD PF00730.25 gi|257388060|ref|YP_003177833.1| - 1.3e-15 57.8 0.0 2e-15 57.2 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|257388060|ref|YP_003177833.1| - 3.7e-05 23.4 0.1 0.00027 20.7 0.0 2.4 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|257388060|ref|YP_003177833.1| - 4.3e-05 24.0 0.2 0.23 12.1 0.0 2.4 2 0 0 2 2 2 2 Helix-hairpin-helix domain HHH_2 PF12826.7 gi|257388060|ref|YP_003177833.1| - 0.0027 17.8 0.1 0.75 9.9 0.0 2.3 2 0 0 2 2 2 2 Helix-hairpin-helix motif Usp PF00582.26 gi|257388061|ref|YP_003177834.1| - 9.3e-68 227.1 6.1 3.2e-33 115.2 0.2 2.0 2 0 0 2 2 2 2 Universal stress protein family NAD_binding_8 PF13450.6 gi|257388062|ref|YP_003177835.1| - 1.1e-09 38.4 0.5 2e-09 37.5 0.5 1.5 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Amino_oxidase PF01593.24 gi|257388062|ref|YP_003177835.1| - 4.4e-07 29.6 3.6 0.0025 17.2 0.1 2.1 1 1 1 2 2 2 2 Flavin containing amine oxidoreductase HBS1_N PF08938.10 gi|257388062|ref|YP_003177835.1| - 0.0041 17.4 0.2 0.1 12.9 0.0 2.8 2 1 1 3 3 3 1 HBS1 N-terminus Prenylcys_lyase PF07156.14 gi|257388062|ref|YP_003177835.1| - 0.1 11.7 0.0 0.14 11.2 0.0 1.2 1 0 0 1 1 1 0 Prenylcysteine lyase ATPgrasp_Ter PF15632.6 gi|257388063|ref|YP_003177836.1| - 6.7e-06 25.9 0.0 1.3e-05 25.0 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp in the biosynthetic pathway with Ter operon ATP-grasp_3 PF02655.14 gi|257388063|ref|YP_003177836.1| - 0.003 17.6 0.0 0.02 15.0 0.0 2.1 1 1 0 1 1 1 1 ATP-grasp domain CPSase_L_D2 PF02786.17 gi|257388063|ref|YP_003177836.1| - 0.0036 16.8 0.0 0.0058 16.2 0.0 1.2 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Beta_helix PF13229.6 gi|257388065|ref|YP_003177838.1| - 4.4e-08 33.1 4.2 0.00041 20.2 0.1 2.7 1 1 2 3 3 3 3 Right handed beta helix region NosD PF05048.13 gi|257388065|ref|YP_003177838.1| - 6.1e-05 22.4 1.0 0.017 14.4 0.0 2.8 1 1 2 3 3 3 2 Periplasmic copper-binding protein (NosD) Pectate_lyase_3 PF12708.7 gi|257388065|ref|YP_003177838.1| - 0.0081 16.0 1.3 48 3.7 0.0 3.7 2 1 2 4 4 4 0 Pectate lyase superfamily protein DUF4957 PF16318.5 gi|257388065|ref|YP_003177838.1| - 0.033 14.1 0.0 0.2 11.6 0.0 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4957) DUF1616 PF07760.11 gi|257388066|ref|YP_003177839.1| - 5e-58 196.8 4.5 5.8e-58 196.6 4.5 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) DUF2206 PF09971.9 gi|257388067|ref|YP_003177840.1| - 1.9e-06 26.9 0.1 3.6e-06 26.0 0.1 1.5 1 0 0 1 1 1 1 Predicted membrane protein (DUF2206) PMT_2 PF13231.6 gi|257388067|ref|YP_003177840.1| - 0.48 10.6 34.6 0.62 10.3 15.0 4.3 3 2 1 4 4 4 0 Dolichyl-phosphate-mannose-protein mannosyltransferase Glyco_transf_4 PF13439.6 gi|257388068|ref|YP_003177841.1| - 2e-11 44.2 0.0 3.6e-11 43.4 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|257388068|ref|YP_003177841.1| - 8.6e-11 42.5 0.7 8.6e-11 42.5 0.7 2.2 2 1 1 3 3 3 1 Glycosyl transferase 4-like domain Glyco_trans_1_4 PF13692.6 gi|257388068|ref|YP_003177841.1| - 1.5e-10 41.6 0.0 3.5e-10 40.4 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.20 gi|257388068|ref|YP_003177841.1| - 3.4e-10 39.7 0.0 6.6e-10 38.8 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|257388068|ref|YP_003177841.1| - 0.00028 21.2 0.0 0.00063 20.1 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|257388068|ref|YP_003177841.1| - 0.0027 17.8 0.0 0.055 13.5 0.0 2.3 1 1 0 1 1 1 1 Glycosyl transferase 4-like Epimerase_2 PF02350.19 gi|257388069|ref|YP_003177842.1| - 3.7e-101 338.4 0.1 4.4e-101 338.2 0.1 1.0 1 0 0 1 1 1 1 UDP-N-acetylglucosamine 2-epimerase DUF354 PF04007.12 gi|257388070|ref|YP_003177843.1| - 1.5e-16 60.4 0.0 2.3e-16 59.8 0.0 1.3 1 1 0 1 1 1 1 Protein of unknown function (DUF354) Glyco_transf_4 PF13439.6 gi|257388070|ref|YP_003177843.1| - 0.00027 21.0 0.1 0.00052 20.0 0.1 1.5 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|257388070|ref|YP_003177843.1| - 0.0023 18.4 5.5 0.0023 18.4 2.5 2.4 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.6 gi|257388070|ref|YP_003177843.1| - 0.0059 16.6 0.0 0.0089 16.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like Glyco_transf_28 PF03033.20 gi|257388070|ref|YP_003177843.1| - 0.039 14.0 0.0 0.089 12.8 0.0 1.5 1 0 0 1 1 1 0 Glycosyltransferase family 28 N-terminal domain Epimerase_2 PF02350.19 gi|257388070|ref|YP_003177843.1| - 0.14 11.0 0.0 0.81 8.5 0.0 1.9 2 0 0 2 2 2 0 UDP-N-acetylglucosamine 2-epimerase HTH_20 PF12840.7 gi|257388071|ref|YP_003177844.1| - 0.0046 17.0 1.5 0.0066 16.5 1.5 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HalOD1 PF18545.1 gi|257388072|ref|YP_003177845.1| - 1.1e-24 86.5 0.0 1.6e-24 86.0 0.0 1.2 1 0 0 1 1 1 1 Halobacterial output domain 1 TrmB PF01978.19 gi|257388073|ref|YP_003177846.1| - 1.7e-16 59.8 0.0 2.9e-16 59.1 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Regulator_TrmB PF11495.8 gi|257388073|ref|YP_003177846.1| - 0.022 14.0 0.0 0.032 13.4 0.0 1.2 1 0 0 1 1 1 0 Archaeal transcriptional regulator TrmB DUF2250 PF10007.9 gi|257388073|ref|YP_003177846.1| - 0.063 13.4 0.0 0.16 12.1 0.0 1.7 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) EthD PF07110.11 gi|257388074|ref|YP_003177847.1| - 0.063 14.4 0.1 0.064 14.4 0.1 1.0 1 0 0 1 1 1 0 EthD domain HTH_20 PF12840.7 gi|257388075|ref|YP_003177848.1| - 0.0042 17.1 0.1 0.0068 16.4 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain UDPG_MGDP_dh_N PF03721.14 gi|257388076|ref|YP_003177849.1| - 3.4e-36 124.6 0.0 5.8e-36 123.8 0.0 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain UDPG_MGDP_dh PF00984.19 gi|257388076|ref|YP_003177849.1| - 4.1e-20 71.8 0.0 7.9e-20 70.9 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, central domain UDPG_MGDP_dh_C PF03720.15 gi|257388076|ref|YP_003177849.1| - 3.9e-15 56.2 0.0 1e-14 54.8 0.0 1.7 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain NAD_binding_2 PF03446.15 gi|257388076|ref|YP_003177849.1| - 3.6e-05 24.0 0.3 0.00013 22.2 0.1 2.0 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.18 gi|257388076|ref|YP_003177849.1| - 0.0034 17.3 0.9 0.0058 16.5 0.1 1.8 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|257388076|ref|YP_003177849.1| - 0.0056 16.7 0.1 0.028 14.4 0.0 2.1 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Thymopoietin PF08198.11 gi|257388078|ref|YP_003177851.1| - 0.14 11.7 0.1 0.24 11.0 0.1 1.3 1 0 0 1 1 1 0 Thymopoietin protein HTH_20 PF12840.7 gi|257388080|ref|YP_003177853.1| - 0.0025 17.8 0.1 0.0038 17.2 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain Replic_Relax PF13814.6 gi|257388080|ref|YP_003177853.1| - 0.0031 17.6 0.0 0.0048 17.0 0.0 1.3 1 0 0 1 1 1 1 Replication-relaxation HTH_45 PF14947.6 gi|257388080|ref|YP_003177853.1| - 0.0073 16.3 0.0 0.0099 15.8 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix HxlR PF01638.17 gi|257388080|ref|YP_003177853.1| - 0.023 14.5 0.0 0.047 13.5 0.0 1.5 2 0 0 2 2 2 0 HxlR-like helix-turn-helix HTH_Crp_2 PF13545.6 gi|257388080|ref|YP_003177853.1| - 0.025 14.5 0.0 0.17 11.9 0.0 2.0 2 0 0 2 2 2 0 Crp-like helix-turn-helix domain TrmB PF01978.19 gi|257388080|ref|YP_003177853.1| - 0.025 14.4 0.2 0.054 13.4 0.0 1.6 2 1 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_27 PF13463.6 gi|257388080|ref|YP_003177853.1| - 0.03 14.8 0.1 0.044 14.3 0.1 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_29 PF13551.6 gi|257388080|ref|YP_003177853.1| - 0.041 13.9 0.3 0.068 13.2 0.0 1.5 2 0 0 2 2 2 0 Winged helix-turn helix HTH_1 PF00126.27 gi|257388080|ref|YP_003177853.1| - 0.066 13.2 0.1 0.14 12.1 0.0 1.6 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family PadR PF03551.14 gi|257388080|ref|YP_003177853.1| - 0.13 12.2 0.0 0.21 11.6 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family Rrf2 PF02082.20 gi|257388080|ref|YP_003177853.1| - 0.15 12.4 0.0 0.3 11.5 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator YdjM PF04307.14 gi|257388081|ref|YP_003177854.1| - 2.1e-08 33.7 9.5 3e-08 33.2 9.5 1.2 1 0 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase HTH_20 PF12840.7 gi|257388082|ref|YP_003177855.1| - 0.071 13.2 0.3 0.89 9.7 0.2 2.5 2 1 0 2 2 2 0 Helix-turn-helix domain Hexapep PF00132.24 gi|257388083|ref|YP_003177856.1| - 1.4e-28 97.5 14.5 2.9e-08 33.1 0.8 5.3 3 1 3 6 6 6 6 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|257388083|ref|YP_003177856.1| - 4.5e-18 64.7 13.2 1.4e-08 34.4 0.5 5.7 4 1 1 6 6 6 5 Hexapeptide repeat of succinyl-transferase Bactofilin PF04519.13 gi|257388083|ref|YP_003177856.1| - 0.055 13.8 6.3 0.05 13.9 2.3 2.2 1 1 1 2 2 2 0 Polymer-forming cytoskeletal DegT_DnrJ_EryC1 PF01041.17 gi|257388084|ref|YP_003177857.1| - 1.1e-124 416.4 0.0 1.2e-124 416.3 0.0 1.0 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_1_2 PF00155.21 gi|257388084|ref|YP_003177857.1| - 2.2e-07 30.4 0.0 3.7e-07 29.7 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|257388084|ref|YP_003177857.1| - 1.3e-05 24.6 0.1 5.1e-05 22.7 0.1 1.7 1 1 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.20 gi|257388084|ref|YP_003177857.1| - 0.19 10.2 0.0 0.29 9.6 0.0 1.2 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme GFO_IDH_MocA PF01408.22 gi|257388085|ref|YP_003177858.1| - 7.1e-25 88.2 0.4 1.3e-24 87.3 0.4 1.5 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold F420_oxidored PF03807.17 gi|257388085|ref|YP_003177858.1| - 7e-07 29.8 0.1 2.1e-06 28.2 0.1 1.8 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.12 gi|257388085|ref|YP_003177858.1| - 1.7e-05 24.5 0.3 3e-05 23.6 0.3 1.4 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain CoA_binding PF02629.19 gi|257388085|ref|YP_003177858.1| - 8.8e-05 23.1 0.2 0.00022 21.8 0.2 1.7 1 0 0 1 1 1 1 CoA binding domain 2-Hacid_dh_C PF02826.19 gi|257388085|ref|YP_003177858.1| - 0.00012 21.5 0.1 0.00021 20.7 0.1 1.4 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Gp_dh_N PF00044.24 gi|257388085|ref|YP_003177858.1| - 0.0017 18.6 0.3 0.042 14.2 0.0 2.4 2 0 0 2 2 2 1 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|257388085|ref|YP_003177858.1| - 0.0024 18.0 2.2 0.0035 17.5 0.4 2.2 1 1 1 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase Semialdhyde_dh PF01118.24 gi|257388085|ref|YP_003177858.1| - 0.0096 16.4 0.2 0.032 14.7 0.2 1.9 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|257388085|ref|YP_003177858.1| - 0.017 15.4 3.9 0.027 14.7 0.9 2.7 2 1 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain 3HCDH_N PF02737.18 gi|257388085|ref|YP_003177858.1| - 0.036 14.0 0.3 0.036 14.0 0.3 1.9 2 1 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DapB_N PF01113.20 gi|257388085|ref|YP_003177858.1| - 0.043 13.9 3.2 0.12 12.5 0.3 2.7 3 0 0 3 3 3 0 Dihydrodipicolinate reductase, N-terminus Polysacc_deac_1 PF01522.21 gi|257388086|ref|YP_003177859.1| - 3.4e-08 33.4 0.0 7.5e-08 32.3 0.0 1.5 1 0 0 1 1 1 1 Polysaccharide deacetylase DUF2334 PF10096.9 gi|257388086|ref|YP_003177859.1| - 0.027 14.1 0.0 0.33 10.6 0.0 2.3 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2334) DUF4129 PF13559.6 gi|257388086|ref|YP_003177859.1| - 1.2 9.5 7.6 2.6 8.4 0.2 3.5 3 1 0 3 3 3 0 Domain of unknown function (DUF4129) Epimerase PF01370.21 gi|257388087|ref|YP_003177860.1| - 2.6e-58 197.3 0.0 3.1e-58 197.1 0.0 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family GDP_Man_Dehyd PF16363.5 gi|257388087|ref|YP_003177860.1| - 9.6e-52 176.4 0.0 1.9e-51 175.5 0.0 1.4 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase Polysacc_synt_2 PF02719.15 gi|257388087|ref|YP_003177860.1| - 5.8e-18 65.0 0.0 1.3e-16 60.6 0.0 2.6 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.19 gi|257388087|ref|YP_003177860.1| - 9e-15 54.4 0.0 1.9e-14 53.4 0.0 1.4 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family RmlD_sub_bind PF04321.17 gi|257388087|ref|YP_003177860.1| - 1.1e-12 47.7 0.1 1.4e-12 47.3 0.1 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain NAD_binding_4 PF07993.12 gi|257388087|ref|YP_003177860.1| - 6.1e-09 35.4 0.2 2.2e-06 27.0 0.0 2.3 1 1 1 2 2 2 2 Male sterility protein NAD_binding_10 PF13460.6 gi|257388087|ref|YP_003177860.1| - 8.8e-08 32.3 0.3 1.8e-07 31.2 0.0 1.6 2 0 0 2 2 2 1 NAD(P)H-binding NmrA PF05368.13 gi|257388087|ref|YP_003177860.1| - 0.0078 15.8 1.0 0.014 15.0 0.1 1.8 2 0 0 2 2 2 1 NmrA-like family adh_short PF00106.25 gi|257388087|ref|YP_003177860.1| - 0.17 11.4 0.0 0.8 9.1 0.0 2.0 2 0 0 2 2 2 0 short chain dehydrogenase Glycos_transf_2 PF00535.26 gi|257388088|ref|YP_003177861.1| - 1.7e-20 73.5 0.0 3.1e-20 72.7 0.0 1.4 1 1 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|257388088|ref|YP_003177861.1| - 5.8e-07 29.6 0.2 1.6e-06 28.2 0.2 1.7 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|257388088|ref|YP_003177861.1| - 0.13 12.8 0.0 0.23 12.0 0.0 1.5 1 0 0 1 1 1 0 Glycosyl transferase family 2 SIS PF01380.22 gi|257388090|ref|YP_003177863.1| - 1.3e-48 164.2 0.0 5.7e-23 81.2 0.1 2.3 2 0 0 2 2 2 2 SIS domain GATase_6 PF13522.6 gi|257388090|ref|YP_003177863.1| - 1.1e-18 67.8 0.2 2.4e-18 66.6 0.2 1.6 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_7 PF13537.6 gi|257388090|ref|YP_003177863.1| - 6.6e-17 61.6 0.0 1e-16 60.9 0.0 1.3 1 0 0 1 1 1 1 Glutamine amidotransferase domain GATase_4 PF13230.6 gi|257388090|ref|YP_003177863.1| - 0.0028 16.6 0.0 0.0045 15.9 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II GRDA PF04723.14 gi|257388090|ref|YP_003177863.1| - 0.013 15.2 0.1 0.14 12.0 0.0 2.3 2 0 0 2 2 2 0 Glycine reductase complex selenoprotein A NUDIX-like PF09296.11 gi|257388090|ref|YP_003177863.1| - 0.1 13.3 0.1 18 6.1 0.0 3.1 2 2 0 2 2 2 0 NADH pyrophosphatase-like rudimentary NUDIX domain OrfB_Zn_ribbon PF07282.11 gi|257388091|ref|YP_003177864.1| - 2.3e-23 81.9 1.5 4.3e-23 81.0 1.5 1.5 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|257388091|ref|YP_003177864.1| - 3.2e-19 69.3 0.0 7.4e-19 68.1 0.0 1.6 1 0 0 1 1 1 1 Probable transposase C1_2 PF03107.16 gi|257388091|ref|YP_003177864.1| - 0.0089 16.3 1.2 0.023 15.0 1.2 1.6 1 0 0 1 1 1 1 C1 domain Ribosomal_L37ae PF01780.19 gi|257388091|ref|YP_003177864.1| - 0.042 13.9 0.7 0.13 12.4 0.7 1.7 1 0 0 1 1 1 0 Ribosomal L37ae protein family Zn_Tnp_IS1595 PF12760.7 gi|257388091|ref|YP_003177864.1| - 0.35 10.9 4.1 0.76 9.8 4.1 1.5 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zf-ACC PF17848.1 gi|257388091|ref|YP_003177864.1| - 0.89 9.7 4.3 1.8 8.7 4.3 1.6 1 0 0 1 1 1 0 Acetyl-coA carboxylase zinc finger domain Glyco_tranf_2_3 PF13641.6 gi|257388093|ref|YP_003177866.1| - 1.1e-16 61.5 2.0 2.9e-10 40.4 0.5 2.1 1 1 1 2 2 2 2 Glycosyltransferase like family 2 Glycos_transf_2 PF00535.26 gi|257388093|ref|YP_003177866.1| - 2.3e-16 60.1 0.1 3.5e-16 59.5 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_trans_2_3 PF13632.6 gi|257388093|ref|YP_003177866.1| - 4.3e-07 30.0 1.1 3e-06 27.3 0.9 2.0 1 1 1 2 2 2 1 Glycosyl transferase family group 2 Glyco_tranf_2_2 PF10111.9 gi|257388093|ref|YP_003177866.1| - 7.5e-05 22.3 0.0 0.033 13.7 0.0 2.1 2 0 0 2 2 2 2 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|257388093|ref|YP_003177866.1| - 0.0061 16.1 0.0 0.037 13.5 0.0 2.0 1 1 1 2 2 2 1 Glycosyl transferase family 21 Glyco_tranf_2_4 PF13704.6 gi|257388093|ref|YP_003177866.1| - 0.04 14.4 0.0 0.071 13.6 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 2 Polysacc_synt_C PF14667.6 gi|257388094|ref|YP_003177867.1| - 2.5e-19 69.8 13.4 2.5e-19 69.8 13.4 3.9 4 1 1 5 5 5 1 Polysaccharide biosynthesis C-terminal domain Polysacc_synt PF01943.17 gi|257388094|ref|YP_003177867.1| - 5.2e-14 52.3 10.9 5.2e-14 52.3 10.9 2.1 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_3 PF13440.6 gi|257388094|ref|YP_003177867.1| - 1.1e-06 28.1 4.3 1.1e-06 28.1 4.3 2.3 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein MurJ PF03023.14 gi|257388094|ref|YP_003177867.1| - 2.9e-06 26.2 6.6 2.9e-06 26.2 6.6 2.2 1 1 1 2 2 2 1 Lipid II flippase MurJ MatE PF01554.18 gi|257388094|ref|YP_003177867.1| - 4e-05 23.3 4.3 4e-05 23.3 4.3 4.1 4 2 1 5 5 5 1 MatE Spc7 PF08317.11 gi|257388095|ref|YP_003177868.1| - 1.8e-08 33.7 65.3 0.00024 20.1 15.5 4.3 2 2 2 4 4 4 4 Spc7 kinetochore protein GAS PF13851.6 gi|257388095|ref|YP_003177868.1| - 2e-07 30.6 55.0 0.00014 21.2 24.7 3.6 2 2 1 3 3 3 3 Growth-arrest specific micro-tubule binding AAA_23 PF13476.6 gi|257388095|ref|YP_003177868.1| - 9.9e-07 29.5 52.6 1.6e+03 -0.6 52.6 4.7 1 1 0 1 1 1 0 AAA domain DHR10 PF18595.1 gi|257388095|ref|YP_003177868.1| - 1.8e-05 24.7 75.9 0.015 15.4 8.1 4.9 2 2 2 4 4 4 3 Designed helical repeat protein 10 domain Seryl_tRNA_N PF02403.22 gi|257388095|ref|YP_003177868.1| - 1.9e-05 24.9 55.5 0.0024 18.1 3.7 5.1 2 2 3 5 5 5 2 Seryl-tRNA synthetase N-terminal domain Baculo_PEP_C PF04513.12 gi|257388095|ref|YP_003177868.1| - 2.1e-05 24.6 20.4 0.046 13.8 0.1 5.1 2 2 2 4 4 4 2 Baculovirus polyhedron envelope protein, PEP, C terminus DUF5082 PF16888.5 gi|257388095|ref|YP_003177868.1| - 2.4e-05 24.6 48.4 0.0071 16.6 9.3 5.7 2 2 2 5 5 5 2 Domain of unknown function (DUF5082) AAA_13 PF13166.6 gi|257388095|ref|YP_003177868.1| - 6e-05 21.9 43.3 0.0041 15.8 17.1 3.3 2 1 0 2 2 2 1 AAA domain TMF_TATA_bd PF12325.8 gi|257388095|ref|YP_003177868.1| - 0.00013 22.2 69.7 0.0032 17.7 4.1 6.2 2 2 4 6 6 6 3 TATA element modulatory factor 1 TATA binding Fib_alpha PF08702.10 gi|257388095|ref|YP_003177868.1| - 0.00018 21.7 38.7 0.0038 17.4 5.5 4.3 3 1 1 4 4 4 2 Fibrinogen alpha/beta chain family FliJ PF02050.16 gi|257388095|ref|YP_003177868.1| - 0.00049 20.3 49.7 0.26 11.5 1.8 4.6 3 1 1 4 4 4 3 Flagellar FliJ protein FlaC_arch PF05377.11 gi|257388095|ref|YP_003177868.1| - 0.00053 20.3 52.4 0.065 13.6 2.7 9.0 3 3 5 9 9 9 2 Flagella accessory protein C (FlaC) TPR_MLP1_2 PF07926.12 gi|257388095|ref|YP_003177868.1| - 0.00056 20.0 63.0 0.12 12.4 4.2 5.2 2 2 1 4 4 4 2 TPR/MLP1/MLP2-like protein DivIC PF04977.15 gi|257388095|ref|YP_003177868.1| - 0.00062 19.5 68.2 0.23 11.3 4.0 8.7 2 2 7 9 9 9 4 Septum formation initiator DUF3450 PF11932.8 gi|257388095|ref|YP_003177868.1| - 0.00079 18.8 10.4 0.00079 18.8 10.4 5.3 2 2 3 5 5 5 2 Protein of unknown function (DUF3450) ATG16 PF08614.11 gi|257388095|ref|YP_003177868.1| - 0.001 19.4 73.8 0.091 13.0 27.0 4.6 2 2 2 4 4 4 3 Autophagy protein 16 (ATG16) Filament PF00038.21 gi|257388095|ref|YP_003177868.1| - 0.0017 18.0 64.8 0.03 13.9 6.0 4.1 1 1 2 3 3 3 2 Intermediate filament protein CENP-F_leu_zip PF10473.9 gi|257388095|ref|YP_003177868.1| - 0.0031 17.5 70.5 0.31 11.1 18.5 4.9 2 2 3 5 5 5 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Atg14 PF10186.9 gi|257388095|ref|YP_003177868.1| - 0.0049 16.0 49.3 0.074 12.1 4.4 4.2 2 2 2 4 4 4 3 Vacuolar sorting 38 and autophagy-related subunit 14 APG6_N PF17675.1 gi|257388095|ref|YP_003177868.1| - 0.0055 17.2 83.7 0.29 11.7 23.2 5.9 2 2 3 5 5 5 1 Apg6 coiled-coil region ERM PF00769.19 gi|257388095|ref|YP_003177868.1| - 0.0065 16.3 22.6 0.0065 16.3 22.6 3.2 1 1 1 2 2 1 1 Ezrin/radixin/moesin family Phage_GP20 PF06810.11 gi|257388095|ref|YP_003177868.1| - 0.011 15.6 45.7 0.04 13.7 2.5 5.7 2 2 2 4 4 4 0 Phage minor structural protein GP20 COG2 PF06148.11 gi|257388095|ref|YP_003177868.1| - 0.016 15.3 7.8 0.016 15.3 7.8 5.7 2 2 4 6 6 6 0 COG (conserved oligomeric Golgi) complex component, COG2 HIP1_clath_bdg PF16515.5 gi|257388095|ref|YP_003177868.1| - 0.016 15.8 58.6 0.4 11.3 4.7 5.2 3 1 1 5 5 5 0 Clathrin-binding domain of Huntingtin-interacting protein 1 BLOC1_2 PF10046.9 gi|257388095|ref|YP_003177868.1| - 0.021 15.1 47.0 0.73 10.2 2.0 6.6 2 2 4 6 6 6 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF1664 PF07889.12 gi|257388095|ref|YP_003177868.1| - 0.021 14.8 40.3 0.31 11.1 1.7 5.7 2 2 3 5 5 5 0 Protein of unknown function (DUF1664) DUF4407 PF14362.6 gi|257388095|ref|YP_003177868.1| - 0.031 13.6 49.4 1.9 7.7 14.6 3.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) Laminin_II PF06009.12 gi|257388095|ref|YP_003177868.1| - 0.044 13.8 32.7 0.52 10.3 6.7 5.1 3 2 4 7 7 6 0 Laminin Domain II DUF1633 PF07794.11 gi|257388095|ref|YP_003177868.1| - 0.046 11.9 10.2 0.097 10.8 10.2 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1633) BORCS7 PF16088.5 gi|257388095|ref|YP_003177868.1| - 0.067 13.4 5.5 0.07 13.4 0.3 3.4 2 1 1 3 3 3 0 BLOC-1-related complex sub-unit 7 Fez1 PF06818.15 gi|257388095|ref|YP_003177868.1| - 0.13 12.7 59.5 0.93 9.9 28.9 4.2 1 1 2 3 3 3 0 Fez1 Bacillus_HBL PF05791.11 gi|257388095|ref|YP_003177868.1| - 0.15 11.9 18.9 1.2 9.0 0.4 4.4 2 2 2 4 4 4 0 Bacillus haemolytic enterotoxin (HBL) TF_Zn_Ribbon PF08271.12 gi|257388095|ref|YP_003177868.1| - 0.15 11.6 0.2 0.44 10.1 0.2 1.8 1 0 0 1 1 1 0 TFIIB zinc-binding NPV_P10 PF05531.12 gi|257388095|ref|YP_003177868.1| - 0.17 12.4 31.5 0.31 11.5 1.2 6.6 2 2 1 6 6 6 0 Nucleopolyhedrovirus P10 protein MAD PF05557.13 gi|257388095|ref|YP_003177868.1| - 0.18 10.1 58.9 0.4 9.0 28.0 2.8 2 1 0 2 2 2 0 Mitotic checkpoint protein EzrA PF06160.12 gi|257388095|ref|YP_003177868.1| - 0.21 9.7 54.8 0.18 10.0 19.8 3.1 2 2 1 3 3 3 0 Septation ring formation regulator, EzrA Herpes_UL6 PF01763.16 gi|257388095|ref|YP_003177868.1| - 0.26 9.7 25.6 0.93 7.9 9.8 3.2 1 1 0 2 2 2 0 Herpesvirus UL6 like DUF3584 PF12128.8 gi|257388095|ref|YP_003177868.1| - 0.34 8.4 61.5 0.11 10.0 27.0 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF3584) DUF3138 PF11336.8 gi|257388095|ref|YP_003177868.1| - 0.38 9.3 1.2 37 2.8 0.0 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF3138) DUF4988 PF16378.5 gi|257388095|ref|YP_003177868.1| - 0.39 10.4 15.7 6.1 6.5 0.4 5.6 5 1 1 6 6 5 0 Domain of unknown function Tropomyosin_1 PF12718.7 gi|257388095|ref|YP_003177868.1| - 0.39 10.9 80.5 0.03 14.5 19.1 4.7 2 2 2 4 4 3 0 Tropomyosin like DASH_Spc19 PF08287.11 gi|257388095|ref|YP_003177868.1| - 0.57 10.1 53.0 0.65 9.9 13.5 4.3 2 2 2 4 4 4 0 Spc19 WXG100 PF06013.12 gi|257388095|ref|YP_003177868.1| - 0.72 10.1 26.3 8.9 6.6 0.9 7.6 4 3 4 8 8 8 0 Proteins of 100 residues with WXG PspA_IM30 PF04012.12 gi|257388095|ref|YP_003177868.1| - 0.91 9.1 48.8 4.9 6.7 2.3 5.8 2 2 3 5 5 5 0 PspA/IM30 family ADIP PF11559.8 gi|257388095|ref|YP_003177868.1| - 1 9.4 56.7 2.3 8.3 12.6 5.1 2 2 2 4 4 4 0 Afadin- and alpha -actinin-Binding DUF4201 PF13870.6 gi|257388095|ref|YP_003177868.1| - 1.2 8.8 53.6 0.51 10.0 7.0 4.6 2 2 1 4 4 4 0 Domain of unknown function (DUF4201) Prefoldin_2 PF01920.20 gi|257388095|ref|YP_003177868.1| - 1.3 9.0 67.1 5.6 7.0 6.9 9.1 2 2 6 8 8 8 0 Prefoldin subunit IFT57 PF10498.9 gi|257388095|ref|YP_003177868.1| - 1.5 7.7 49.2 1.5 7.7 10.0 3.9 2 2 2 4 4 4 0 Intra-flagellar transport protein 57 Prefoldin PF02996.17 gi|257388095|ref|YP_003177868.1| - 1.6 8.7 51.6 0.69 9.8 3.2 8.6 3 3 7 10 10 10 0 Prefoldin subunit DUF812 PF05667.11 gi|257388095|ref|YP_003177868.1| - 2.3 7.0 57.7 0.91 8.3 20.5 4.1 2 2 2 4 4 4 0 Protein of unknown function (DUF812) HemX PF04375.14 gi|257388095|ref|YP_003177868.1| - 2.8 7.1 42.0 0.71 9.1 6.2 4.3 2 2 1 4 4 4 0 HemX, putative uroporphyrinogen-III C-methyltransferase DUF724 PF05266.14 gi|257388095|ref|YP_003177868.1| - 2.8 7.7 50.2 3.8 7.3 9.5 4.4 2 2 3 5 5 5 0 Protein of unknown function (DUF724) FlxA PF14282.6 gi|257388095|ref|YP_003177868.1| - 3.2 7.8 40.5 0.083 12.9 1.7 5.1 4 1 1 5 5 5 0 FlxA-like protein Prominin PF05478.11 gi|257388095|ref|YP_003177868.1| - 3.4 5.5 26.6 0.16 9.9 2.2 3.8 2 2 1 3 3 3 0 Prominin DUF4200 PF13863.6 gi|257388095|ref|YP_003177868.1| - 3.6 8.0 61.5 2.5 8.5 4.9 5.6 2 2 3 5 5 5 0 Domain of unknown function (DUF4200) HALZ PF02183.18 gi|257388095|ref|YP_003177868.1| - 3.8 7.8 33.7 3.3 8.0 0.2 6.8 6 1 0 6 6 6 0 Homeobox associated leucine zipper ZapB PF06005.12 gi|257388095|ref|YP_003177868.1| - 4 8.0 66.3 1.6 9.2 1.0 7.5 2 2 3 6 6 6 0 Cell division protein ZapB FPP PF05911.11 gi|257388095|ref|YP_003177868.1| - 4.3 5.4 56.8 1.5 6.9 22.4 3.2 1 1 1 3 3 3 0 Filament-like plant protein, long coiled-coil FUSC PF04632.12 gi|257388095|ref|YP_003177868.1| - 4.4 5.7 34.2 0.46 9.0 4.7 3.3 2 1 1 3 3 3 0 Fusaric acid resistance protein family Golgin_A5 PF09787.9 gi|257388095|ref|YP_003177868.1| - 4.8 6.6 72.0 0.7 9.3 9.2 4.3 2 2 2 4 4 4 0 Golgin subfamily A member 5 TcpS PF17456.2 gi|257388095|ref|YP_003177868.1| - 4.8 7.2 15.5 6.7 6.8 0.0 4.1 3 1 1 4 4 4 0 Toxin-coregulated pilus protein S HAUS-augmin3 PF14932.6 gi|257388095|ref|YP_003177868.1| - 4.8 6.7 49.0 0.083 12.4 5.4 5.0 2 2 2 4 4 3 0 HAUS augmin-like complex subunit 3 Exonuc_VII_L PF02601.15 gi|257388095|ref|YP_003177868.1| - 5.9 6.4 37.0 1.8e+04 -14.3 37.0 3.3 1 1 0 1 1 0 0 Exonuclease VII, large subunit FliD_N PF02465.18 gi|257388095|ref|YP_003177868.1| - 6.2 7.6 19.2 13 6.5 0.5 6.0 4 1 2 6 6 5 0 Flagellar hook-associated protein 2 N-terminus Spectrin PF00435.21 gi|257388095|ref|YP_003177868.1| - 6.4 7.3 51.4 3.1 8.3 4.0 5.5 2 2 2 5 5 5 0 Spectrin repeat GIT_CC PF16559.5 gi|257388095|ref|YP_003177868.1| - 7 6.6 12.8 3 7.8 0.2 5.0 5 1 0 5 5 4 0 GIT coiled-coil Rho guanine nucleotide exchange factor OmpH PF03938.14 gi|257388095|ref|YP_003177868.1| - 7.3 6.9 53.2 7.7 6.9 3.9 4.6 2 2 2 4 4 4 0 Outer membrane protein (OmpH-like) MscS_porin PF12795.7 gi|257388095|ref|YP_003177868.1| - 7.6 6.0 58.6 3.6 7.1 5.7 3.7 2 2 1 3 3 3 0 Mechanosensitive ion channel porin domain FapA PF03961.13 gi|257388095|ref|YP_003177868.1| - 8.9 4.8 42.9 0.95 8.0 3.0 4.3 1 1 3 4 4 4 0 Flagellar Assembly Protein A Acyl-CoA_dh_2 PF08028.11 gi|257388095|ref|YP_003177868.1| - 9.1 6.6 9.7 1 9.6 0.7 3.2 3 0 0 3 3 2 0 Acyl-CoA dehydrogenase, C-terminal domain Relaxase PF03432.14 gi|257388096|ref|YP_003177869.1| - 0.0071 16.0 0.3 0.013 15.2 0.3 1.4 1 1 0 1 1 1 1 Relaxase/Mobilisation nuclease domain BolA PF01722.18 gi|257388097|ref|YP_003177870.1| - 3.1e-16 59.4 0.0 3.5e-16 59.2 0.0 1.1 1 0 0 1 1 1 1 BolA-like protein Glutaredoxin PF00462.24 gi|257388098|ref|YP_003177871.1| - 1e-13 51.2 0.0 1.5e-13 50.8 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin KH_7 PF17214.3 gi|257388099|ref|YP_003177872.1| - 6.9e-25 86.8 0.3 3.4e-23 81.4 0.2 2.7 2 0 0 2 2 2 1 KH domain Beta-Casp PF10996.8 gi|257388099|ref|YP_003177872.1| - 2e-23 82.8 0.0 3.8e-23 81.9 0.0 1.5 1 0 0 1 1 1 1 Beta-Casp domain RMMBL PF07521.12 gi|257388099|ref|YP_003177872.1| - 2.8e-17 62.4 0.0 5.9e-17 61.4 0.0 1.6 1 0 0 1 1 1 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B PF00753.27 gi|257388099|ref|YP_003177872.1| - 7.3e-13 49.0 2.5 4.5e-12 46.4 2.5 2.2 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_6 PF16661.5 gi|257388099|ref|YP_003177872.1| - 1.3e-11 44.3 0.0 2.2e-11 43.6 0.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|257388099|ref|YP_003177872.1| - 2.4e-11 43.5 0.2 7.4e-11 41.9 0.3 1.9 2 0 0 2 2 2 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|257388099|ref|YP_003177872.1| - 0.00038 20.4 0.1 0.0013 18.7 0.1 1.9 1 1 0 1 1 1 1 Beta-lactamase superfamily domain KH_2 PF07650.17 gi|257388099|ref|YP_003177872.1| - 0.00048 19.9 0.0 0.0025 17.6 0.0 2.1 2 0 0 2 2 2 1 KH domain KH_4 PF13083.6 gi|257388099|ref|YP_003177872.1| - 0.00063 19.6 0.0 0.0018 18.1 0.0 1.7 1 0 0 1 1 1 1 KH domain PepSY_TM_like_2 PF16357.5 gi|257388099|ref|YP_003177872.1| - 0.083 12.9 0.0 0.15 12.0 0.0 1.3 1 0 0 1 1 1 0 Putative PepSY_TM-like Beta_elim_lyase PF01212.21 gi|257388100|ref|YP_003177873.1| - 3.5e-85 285.8 0.1 4.3e-85 285.5 0.1 1.0 1 0 0 1 1 1 1 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.20 gi|257388100|ref|YP_003177873.1| - 0.00094 17.8 0.0 0.0013 17.4 0.0 1.1 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|257388100|ref|YP_003177873.1| - 0.0015 17.9 0.1 0.08 12.2 0.0 2.4 3 0 0 3 3 3 2 DegT/DnrJ/EryC1/StrS aminotransferase family HxlR PF01638.17 gi|257388101|ref|YP_003177874.1| - 1.8e-26 91.8 0.0 2.2e-26 91.5 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix PadR PF03551.14 gi|257388101|ref|YP_003177874.1| - 0.0087 16.0 0.0 0.012 15.5 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family TrmB PF01978.19 gi|257388101|ref|YP_003177874.1| - 0.019 14.8 0.0 0.028 14.3 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|257388101|ref|YP_003177874.1| - 0.12 12.5 0.1 0.19 11.8 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_45 PF14947.6 gi|257388101|ref|YP_003177874.1| - 0.25 11.4 0.0 0.33 11.0 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix MarR_2 PF12802.7 gi|257388102|ref|YP_003177875.1| - 3.5e-06 26.8 0.0 4.5e-06 26.5 0.0 1.2 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|257388102|ref|YP_003177875.1| - 0.00011 22.2 0.2 0.00015 21.7 0.2 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|257388102|ref|YP_003177875.1| - 0.00033 20.4 0.1 0.00049 19.8 0.1 1.2 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|257388102|ref|YP_003177875.1| - 0.00034 20.1 0.0 0.00047 19.7 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|257388102|ref|YP_003177875.1| - 0.00052 19.9 0.0 0.00069 19.5 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_43 PF09904.9 gi|257388102|ref|YP_003177875.1| - 0.0064 16.4 0.0 0.0093 15.9 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn helix HTH_11 PF08279.12 gi|257388102|ref|YP_003177875.1| - 0.015 15.2 0.0 0.021 14.8 0.0 1.2 1 0 0 1 1 1 0 HTH domain Rrf2 PF02082.20 gi|257388102|ref|YP_003177875.1| - 0.03 14.7 0.0 0.044 14.1 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator TFIIE_alpha PF02002.17 gi|257388102|ref|YP_003177875.1| - 0.041 13.8 0.0 0.046 13.6 0.0 1.1 1 0 0 1 1 1 0 TFIIE alpha subunit GntR PF00392.21 gi|257388102|ref|YP_003177875.1| - 0.05 13.2 0.8 0.083 12.6 0.5 1.5 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family DUF2272 PF10030.9 gi|257388102|ref|YP_003177875.1| - 0.072 12.8 0.0 0.072 12.8 0.0 1.1 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2272) RepL PF05732.11 gi|257388102|ref|YP_003177875.1| - 0.2 11.0 0.0 0.26 10.7 0.0 1.1 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) HTH_5 PF01022.20 gi|257388102|ref|YP_003177875.1| - 0.22 11.4 0.0 0.22 11.4 0.0 1.5 2 0 0 2 2 1 0 Bacterial regulatory protein, arsR family AMP-binding PF00501.28 gi|257388103|ref|YP_003177876.1| - 1.6e-75 254.4 0.0 2e-75 254.0 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|257388103|ref|YP_003177876.1| - 6e-24 84.8 0.2 1.4e-23 83.6 0.2 1.7 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|257388103|ref|YP_003177876.1| - 4.1e-10 39.4 0.1 4.1e-10 39.4 0.1 3.1 4 0 0 4 4 4 1 Acetyl-coenzyme A synthetase N-terminus DUF1967 PF09269.11 gi|257388103|ref|YP_003177876.1| - 0.045 13.7 0.0 0.64 10.0 0.0 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF1967) CBS PF00571.28 gi|257388104|ref|YP_003177877.1| - 4.1e-26 91.2 6.4 5.3e-13 49.2 1.5 2.1 2 0 0 2 2 2 2 CBS domain DUF3126 PF11324.8 gi|257388104|ref|YP_003177877.1| - 0.11 12.3 0.6 0.98 9.3 0.1 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF3126) ROK PF00480.20 gi|257388105|ref|YP_003177878.1| - 2.1e-46 158.8 0.1 2.7e-46 158.4 0.1 1.0 1 0 0 1 1 1 1 ROK family DUF1508 PF07411.12 gi|257388106|ref|YP_003177879.1| - 2.9e-79 260.8 24.7 5.7e-20 70.9 0.2 5.8 6 0 0 6 6 6 5 Domain of unknown function (DUF1508) Tombus_P19 PF03220.13 gi|257388106|ref|YP_003177879.1| - 0.0014 18.4 1.4 9 6.0 0.1 3.9 3 1 1 4 4 4 1 Tombusvirus P19 core protein Inhibitor_I42 PF09394.10 gi|257388106|ref|YP_003177879.1| - 0.0029 18.0 0.1 6.2 7.3 0.0 4.0 4 0 0 4 4 4 1 Chagasin family peptidase inhibitor I42 DUF5110 PF17137.4 gi|257388106|ref|YP_003177879.1| - 0.018 15.3 1.9 21 5.5 0.0 4.1 4 0 0 4 4 4 0 Domain of unknown function (DUF5110) DUF3310 PF11753.8 gi|257388106|ref|YP_003177879.1| - 0.027 14.7 0.8 26 5.1 0.0 4.2 5 0 0 5 5 5 0 Protein of unknwon function (DUF3310) Yip1 PF04893.17 gi|257388106|ref|YP_003177879.1| - 0.091 12.5 8.0 0.16 11.6 8.0 1.3 1 0 0 1 1 1 0 Yip1 domain DUF2157 PF09925.9 gi|257388106|ref|YP_003177879.1| - 0.1 12.4 4.7 0.24 11.2 4.7 1.6 1 1 0 1 1 1 0 Predicted membrane protein (DUF2157) DUF948 PF06103.11 gi|257388106|ref|YP_003177879.1| - 0.22 11.8 0.4 0.8 10.0 0.4 1.9 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF948) DUF751 PF05421.11 gi|257388106|ref|YP_003177879.1| - 0.22 12.3 5.7 0.09 13.5 1.2 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF751) HTH_24 PF13412.6 gi|257388107|ref|YP_003177880.1| - 8.8e-09 34.8 0.0 1.4e-08 34.1 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|257388107|ref|YP_003177880.1| - 6.7e-08 32.3 0.0 1.8e-07 30.9 0.0 1.7 1 0 0 1 1 1 1 MarR family MarR PF01047.22 gi|257388107|ref|YP_003177880.1| - 1e-06 28.5 0.0 2e-06 27.6 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_11 PF08279.12 gi|257388107|ref|YP_003177880.1| - 9.8e-06 25.4 0.0 1.6e-05 24.7 0.0 1.4 1 0 0 1 1 1 1 HTH domain HTH_Crp_2 PF13545.6 gi|257388107|ref|YP_003177880.1| - 1.4e-05 25.0 0.0 2.6e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_45 PF14947.6 gi|257388107|ref|YP_003177880.1| - 6e-05 23.0 0.0 9e-05 22.4 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DUF4423 PF14394.6 gi|257388107|ref|YP_003177880.1| - 8.6e-05 22.3 0.0 0.00014 21.7 0.0 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) HTH_IclR PF09339.10 gi|257388107|ref|YP_003177880.1| - 0.00014 21.5 0.0 0.0003 20.5 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_27 PF13463.6 gi|257388107|ref|YP_003177880.1| - 0.00029 21.3 0.0 0.00072 20.0 0.0 1.7 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_12 PF08461.10 gi|257388107|ref|YP_003177880.1| - 0.00058 19.8 0.0 0.0019 18.1 0.0 1.9 2 0 0 2 2 2 1 Ribonuclease R winged-helix domain Rrf2 PF02082.20 gi|257388107|ref|YP_003177880.1| - 0.0025 18.1 0.0 0.0056 17.0 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator DUF4364 PF14277.6 gi|257388107|ref|YP_003177880.1| - 0.0063 16.3 0.0 0.0095 15.7 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4364) TrmB PF01978.19 gi|257388107|ref|YP_003177880.1| - 0.015 15.1 0.0 0.03 14.2 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_13 PF11972.8 gi|257388107|ref|YP_003177880.1| - 0.016 15.3 0.0 0.062 13.4 0.0 2.0 1 1 1 2 2 2 0 HTH DNA binding domain SMC_ScpB PF04079.16 gi|257388107|ref|YP_003177880.1| - 0.016 14.8 0.2 0.067 12.8 0.2 1.9 2 0 0 2 2 2 0 Segregation and condensation complex subunit ScpB Rio2_N PF09202.11 gi|257388107|ref|YP_003177880.1| - 0.037 14.3 0.0 0.07 13.4 0.0 1.4 1 0 0 1 1 1 0 Rio2, N-terminal Mrr_N PF14338.6 gi|257388107|ref|YP_003177880.1| - 0.037 14.1 0.0 0.091 12.9 0.0 1.8 1 1 0 1 1 1 0 Mrr N-terminal domain RuvB_C PF05491.13 gi|257388107|ref|YP_003177880.1| - 0.041 13.8 0.0 0.07 13.0 0.0 1.4 1 0 0 1 1 1 0 RuvB C-terminal winged helix domain HTH_5 PF01022.20 gi|257388107|ref|YP_003177880.1| - 0.097 12.6 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family FaeA PF04703.12 gi|257388107|ref|YP_003177880.1| - 0.1 13.0 1.0 0.18 12.2 0.1 1.9 2 0 0 2 2 1 0 FaeA-like protein Sigma70_r4_2 PF08281.12 gi|257388107|ref|YP_003177880.1| - 0.12 12.0 0.0 0.25 11.1 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 HU-DNA_bdg PF14848.6 gi|257388107|ref|YP_003177880.1| - 0.15 12.1 0.3 0.39 10.7 0.2 1.9 1 1 0 1 1 1 0 DNA-binding domain HTH_3 PF01381.22 gi|257388107|ref|YP_003177880.1| - 0.15 12.1 0.1 0.32 11.1 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix DUF1059 PF06348.11 gi|257388108|ref|YP_003177881.1| - 0.2 11.9 1.7 0.33 11.2 1.7 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF1059) Arylsulfotrans PF05935.11 gi|257388109|ref|YP_003177882.1| - 1.8e-06 27.2 4.9 3e-06 26.4 2.7 2.2 2 1 1 3 3 3 1 Arylsulfotransferase (ASST) Arylsulfotran_2 PF14269.6 gi|257388109|ref|YP_003177882.1| - 1.2e-05 24.9 3.2 0.0006 19.3 3.2 2.4 1 1 0 1 1 1 1 Arylsulfotransferase (ASST) NHL PF01436.21 gi|257388109|ref|YP_003177882.1| - 1.8 8.8 8.2 2.6 8.3 0.1 4.4 4 0 0 4 4 4 0 NHL repeat DUF234 PF03008.14 gi|257388110|ref|YP_003177883.1| - 2.3e-25 88.9 0.0 5e-25 87.8 0.0 1.5 1 0 0 1 1 1 1 Archaea bacterial proteins of unknown function ATPase_2 PF01637.18 gi|257388110|ref|YP_003177883.1| - 1e-22 81.2 0.0 1.8e-22 80.4 0.0 1.4 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea AAA_14 PF13173.6 gi|257388110|ref|YP_003177883.1| - 2.9e-06 27.4 0.0 6e-06 26.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|257388110|ref|YP_003177883.1| - 0.00063 20.2 0.0 0.0014 19.1 0.0 1.7 1 0 0 1 1 1 1 AAA ATPase domain HTH_IclR PF09339.10 gi|257388110|ref|YP_003177883.1| - 0.0033 17.2 0.0 0.0067 16.2 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain AAA_22 PF13401.6 gi|257388110|ref|YP_003177883.1| - 0.01 16.1 0.0 0.021 15.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain HTH_24 PF13412.6 gi|257388110|ref|YP_003177883.1| - 0.015 14.8 0.0 0.028 14.0 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_45 PF14947.6 gi|257388110|ref|YP_003177883.1| - 0.025 14.6 0.0 0.05 13.6 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_5 PF01022.20 gi|257388110|ref|YP_003177883.1| - 0.032 14.1 0.0 0.065 13.1 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Roc PF08477.13 gi|257388110|ref|YP_003177883.1| - 0.19 12.0 0.0 0.36 11.1 0.0 1.4 1 0 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase zf-FCS PF06467.14 gi|257388111|ref|YP_003177884.1| - 0.041 13.8 1.5 0.23 11.4 1.5 1.9 1 1 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif NTP_transferase PF00483.23 gi|257388112|ref|YP_003177885.1| - 5.2e-40 137.6 0.0 7.8e-40 137.0 0.0 1.2 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|257388112|ref|YP_003177885.1| - 2e-16 60.7 0.5 3.1e-16 60.1 0.5 1.4 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.24 gi|257388112|ref|YP_003177885.1| - 1.1e-07 31.3 16.3 0.012 15.3 0.7 4.9 4 1 1 5 5 5 3 Bacterial transferase hexapeptide (six repeats) IspD PF01128.19 gi|257388112|ref|YP_003177885.1| - 2e-05 24.4 0.0 3.4e-05 23.7 0.0 1.3 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DUF4954 PF16314.5 gi|257388112|ref|YP_003177885.1| - 0.03 12.5 0.3 0.041 12.0 0.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4954) Bactofilin PF04519.13 gi|257388112|ref|YP_003177885.1| - 0.13 12.6 3.7 0.13 12.6 2.1 1.8 1 1 0 1 1 1 0 Polymer-forming cytoskeletal Hexapep_2 PF14602.6 gi|257388112|ref|YP_003177885.1| - 1.6 8.6 7.8 15 5.5 0.5 4.2 2 1 1 3 3 3 0 Hexapeptide repeat of succinyl-transferase PAS_4 PF08448.10 gi|257388113|ref|YP_003177886.1| - 1.4e-15 57.5 1.7 2e-15 57.0 0.9 1.7 2 0 0 2 2 2 1 PAS fold HATPase_c PF02518.26 gi|257388113|ref|YP_003177886.1| - 8.4e-14 52.0 0.0 1.7e-13 51.1 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|257388113|ref|YP_003177886.1| - 4.9e-13 48.9 3.3 7.5e-13 48.3 2.1 1.9 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain PAS_9 PF13426.7 gi|257388113|ref|YP_003177886.1| - 2e-08 34.4 0.0 5.2e-08 33.1 0.0 1.7 2 0 0 2 2 2 1 PAS domain PAS PF00989.25 gi|257388113|ref|YP_003177886.1| - 4.6e-05 23.4 0.0 9.3e-05 22.4 0.0 1.6 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 gi|257388113|ref|YP_003177886.1| - 0.00031 20.7 0.4 0.0012 18.8 0.0 2.2 2 0 0 2 2 2 1 PAS domain PAS_3 PF08447.12 gi|257388113|ref|YP_003177886.1| - 0.0048 17.2 0.2 0.013 15.8 0.1 1.8 1 1 1 2 2 2 1 PAS fold HATPase_c_2 PF13581.6 gi|257388113|ref|YP_003177886.1| - 0.023 14.6 0.0 0.053 13.5 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 gi|257388113|ref|YP_003177886.1| - 0.077 12.8 0.0 0.14 12.0 0.0 1.4 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 3HCDH_N PF02737.18 gi|257388114|ref|YP_003177887.1| - 2.1e-66 223.3 0.1 5.1e-66 222.0 0.1 1.7 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ECH_1 PF00378.20 gi|257388114|ref|YP_003177887.1| - 6.3e-63 212.4 0.0 9.7e-63 211.8 0.0 1.3 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase 3HCDH PF00725.22 gi|257388114|ref|YP_003177887.1| - 7.2e-48 161.2 2.1 1.9e-32 111.8 0.0 3.5 3 0 0 3 3 3 2 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ECH_2 PF16113.5 gi|257388114|ref|YP_003177887.1| - 7e-36 124.4 0.0 6.8e-33 114.5 0.0 2.4 1 1 1 2 2 2 2 Enoyl-CoA hydratase/isomerase NAD_binding_2 PF03446.15 gi|257388114|ref|YP_003177887.1| - 3.8e-05 23.9 0.3 0.00011 22.4 0.3 1.8 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_Gly3P_dh_N PF01210.23 gi|257388114|ref|YP_003177887.1| - 0.00011 22.2 0.1 0.00031 20.7 0.0 1.8 2 0 0 2 2 2 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus F420_oxidored PF03807.17 gi|257388114|ref|YP_003177887.1| - 0.0084 16.7 2.9 0.077 13.6 2.9 2.6 1 1 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 gi|257388114|ref|YP_003177887.1| - 0.18 11.2 0.5 0.64 9.3 0.5 1.9 1 1 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Acyl-CoA_dh_1 PF00441.24 gi|257388115|ref|YP_003177888.1| - 3.2e-52 176.7 1.5 5e-52 176.1 1.5 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|257388115|ref|YP_003177888.1| - 3.1e-33 114.8 1.3 1.4e-32 112.7 0.1 2.4 3 0 0 3 3 3 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.11 gi|257388115|ref|YP_003177888.1| - 1.2e-26 93.6 2.7 1.7e-26 93.0 2.7 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|257388115|ref|YP_003177888.1| - 4.4e-25 87.7 0.0 8.1e-25 86.9 0.0 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Sec8_exocyst PF04048.14 gi|257388115|ref|YP_003177888.1| - 0.13 12.1 0.1 0.22 11.4 0.1 1.3 1 0 0 1 1 1 0 Sec8 exocyst complex component specific domain PPK2 PF03976.14 gi|257388116|ref|YP_003177889.1| - 0.0035 16.9 0.0 0.0039 16.7 0.0 1.1 1 0 0 1 1 1 1 Polyphosphate kinase 2 (PPK2) DUF1805 PF08827.11 gi|257388116|ref|YP_003177889.1| - 0.1 13.0 0.2 0.26 11.6 0.1 1.9 1 1 1 2 2 2 0 Domain of unknown function (DUF1805) Viral_DNA_bp PF00747.17 gi|257388116|ref|YP_003177889.1| - 0.23 8.6 0.3 0.79 6.8 0.2 1.6 1 1 1 2 2 2 0 ssDNA binding protein HhH-GPD PF00730.25 gi|257388117|ref|YP_003177890.1| - 4.6e-14 52.8 0.0 6.1e-14 52.4 0.0 1.1 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein ABATE PF07336.11 gi|257388117|ref|YP_003177890.1| - 0.17 12.5 4.2 1.4 9.6 2.3 2.1 1 1 1 2 2 2 0 Putative stress-induced transcription regulator Zn-ribbon_8 PF09723.10 gi|257388118|ref|YP_003177891.1| - 0.011 15.8 2.4 0.011 15.8 1.0 1.7 2 0 0 2 2 2 0 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|257388118|ref|YP_003177891.1| - 0.014 14.7 1.4 2 8.0 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.6 gi|257388118|ref|YP_003177891.1| - 0.046 13.6 1.1 4.8 7.2 0.0 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Zn_ribbon_SprT PF17283.2 gi|257388118|ref|YP_003177891.1| - 0.048 13.6 2.1 0.31 11.0 0.3 2.1 2 0 0 2 2 2 0 SprT-like zinc ribbon domain HypA PF01155.19 gi|257388118|ref|YP_003177891.1| - 0.079 13.0 0.4 0.11 12.5 0.4 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-HIT PF04438.16 gi|257388118|ref|YP_003177891.1| - 0.093 12.6 4.0 0.8 9.6 0.8 2.1 2 0 0 2 2 2 0 HIT zinc finger Rubredoxin_2 PF18073.1 gi|257388118|ref|YP_003177891.1| - 0.13 12.0 2.2 4.3 7.1 0.3 2.4 2 0 0 2 2 2 0 Rubredoxin metal binding domain Zn_Tnp_IS1595 PF12760.7 gi|257388118|ref|YP_003177891.1| - 0.16 12.0 2.6 7.3 6.7 0.6 2.2 2 0 0 2 2 2 0 Transposase zinc-ribbon domain Zn_Tnp_IS1 PF03811.13 gi|257388118|ref|YP_003177891.1| - 0.3 10.8 5.4 12 5.7 0.1 3.0 3 0 0 3 3 3 0 InsA N-terminal domain OrfB_Zn_ribbon PF07282.11 gi|257388118|ref|YP_003177891.1| - 0.31 11.0 4.0 3.4 7.7 0.7 2.2 1 1 1 2 2 2 0 Putative transposase DNA-binding domain TF_Zn_Ribbon PF08271.12 gi|257388118|ref|YP_003177891.1| - 0.62 9.6 5.1 3.6 7.2 5.2 2.1 1 1 1 2 2 2 0 TFIIB zinc-binding zf_UBZ PF18439.1 gi|257388118|ref|YP_003177891.1| - 3.4 7.4 7.2 11 5.8 0.2 3.2 3 0 0 3 3 3 0 Ubiquitin-Binding Zinc Finger MafB19-deam PF14437.6 gi|257388119|ref|YP_003177892.1| - 3.5e-13 49.5 0.0 4.1e-13 49.3 0.0 1.1 1 0 0 1 1 1 1 MafB19-like deaminase dCMP_cyt_deam_1 PF00383.23 gi|257388119|ref|YP_003177892.1| - 1.8e-12 47.0 0.0 2.4e-12 46.6 0.0 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region SNAD4 PF18750.1 gi|257388119|ref|YP_003177892.1| - 0.0029 17.7 0.0 0.0042 17.2 0.0 1.2 1 0 0 1 1 1 1 Secreted Novel AID/APOBEC-like Deaminase 4 NAD1 PF18778.1 gi|257388119|ref|YP_003177892.1| - 0.031 14.4 0.0 0.042 13.9 0.0 1.1 1 0 0 1 1 1 0 Novel AID APOBEC clade 1 APOBEC2 PF18772.1 gi|257388119|ref|YP_003177892.1| - 0.044 13.8 0.0 0.062 13.3 0.0 1.1 1 0 0 1 1 1 0 APOBEC2 NAD2 PF18782.1 gi|257388119|ref|YP_003177892.1| - 0.049 13.7 0.0 0.069 13.3 0.0 1.1 1 0 0 1 1 1 0 Novel AID APOBEC clade 2 Hexapep PF00132.24 gi|257388120|ref|YP_003177893.1| - 2.4e-13 49.2 5.0 4.6e-08 32.5 0.2 3.0 2 1 1 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|257388120|ref|YP_003177893.1| - 6.9e-09 35.3 7.1 3.9e-08 32.9 1.1 2.8 2 1 0 2 2 2 2 Hexapeptide repeat of succinyl-transferase SATase_N PF06426.14 gi|257388120|ref|YP_003177893.1| - 0.06 13.7 0.0 0.093 13.1 0.0 1.3 1 0 0 1 1 1 0 Serine acetyltransferase, N-terminal RimK PF08443.11 gi|257388121|ref|YP_003177894.1| - 6.4e-26 91.1 0.0 1.1e-25 90.4 0.0 1.3 1 0 0 1 1 1 1 RimK-like ATP-grasp domain Zn_protease PF05618.11 gi|257388121|ref|YP_003177894.1| - 1.2e-09 38.2 0.2 3.8e-07 30.1 0.0 2.3 1 1 1 2 2 2 2 Putative ATP-dependant zinc protease GSH-S_ATP PF02955.16 gi|257388121|ref|YP_003177894.1| - 5.2e-09 35.7 0.0 9.6e-09 34.9 0.0 1.3 1 0 0 1 1 1 1 Prokaryotic glutathione synthetase, ATP-grasp domain ATP-grasp_3 PF02655.14 gi|257388121|ref|YP_003177894.1| - 1.5e-06 28.3 0.0 3.7e-06 27.1 0.0 1.7 1 1 0 1 1 1 1 ATP-grasp domain gag-asp_proteas PF13975.6 gi|257388121|ref|YP_003177894.1| - 4.2e-05 24.0 0.3 9.6e-05 22.9 0.3 1.6 1 0 0 1 1 1 1 gag-polyprotein putative aspartyl protease Asp_protease_2 PF13650.6 gi|257388121|ref|YP_003177894.1| - 0.0012 19.5 1.9 0.003 18.2 1.0 2.1 2 0 0 2 2 2 1 Aspartyl protease ATPgrasp_ST PF14397.6 gi|257388121|ref|YP_003177894.1| - 0.011 15.0 0.0 1.4 8.1 0.0 2.2 2 0 0 2 2 2 0 Sugar-transfer associated ATP-grasp R2K_3 PF14243.6 gi|257388121|ref|YP_003177894.1| - 0.018 15.0 2.1 0.048 13.7 2.1 1.6 1 0 0 1 1 1 0 ATP-grasp domain, R2K clade family 3 ATPgrasp_YheCD PF14398.6 gi|257388121|ref|YP_003177894.1| - 0.11 11.7 0.0 0.27 10.4 0.0 1.5 1 1 0 1 1 1 0 YheC/D like ATP-grasp AstE_AspA PF04952.14 gi|257388122|ref|YP_003177895.1| - 2.5e-69 233.6 0.0 2.8e-69 233.4 0.0 1.0 1 0 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family PIN_9 PF18477.1 gi|257388122|ref|YP_003177895.1| - 0.041 14.2 0.0 0.078 13.3 0.0 1.3 1 0 0 1 1 1 0 PIN like domain CshA_NR2 PF18651.1 gi|257388122|ref|YP_003177895.1| - 0.13 11.4 0.0 0.19 10.9 0.0 1.2 1 0 0 1 1 1 0 Surface adhesin CshA non-repetitive domain 2 Sdh_cyt PF01127.22 gi|257388123|ref|YP_003177896.1| - 3e-24 85.4 4.3 3.4e-24 85.2 4.3 1.0 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Sdh_cyt PF01127.22 gi|257388124|ref|YP_003177897.1| - 5.2e-10 39.4 8.0 6.7e-10 39.0 8.0 1.1 1 0 0 1 1 1 1 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DUF2517 PF10725.9 gi|257388124|ref|YP_003177897.1| - 0.044 13.6 0.0 0.085 12.6 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2517) DUF1673 PF07895.11 gi|257388124|ref|YP_003177897.1| - 0.36 10.5 5.0 0.45 10.2 2.5 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF1673) Fer2_3 PF13085.6 gi|257388125|ref|YP_003177898.1| - 2.1e-34 117.8 0.7 5.1e-34 116.6 0.0 1.9 2 0 0 2 2 2 1 2Fe-2S iron-sulfur cluster binding domain Fer4_8 PF13183.6 gi|257388125|ref|YP_003177898.1| - 1.7e-12 47.6 4.1 1.7e-12 47.6 4.1 2.1 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|257388125|ref|YP_003177898.1| - 1.1e-08 35.0 4.4 2.5e-08 33.9 4.4 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|257388125|ref|YP_003177898.1| - 4.1e-06 27.3 2.9 4.1e-06 27.3 2.9 2.4 2 1 0 2 2 2 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|257388125|ref|YP_003177898.1| - 3.3e-05 24.3 4.5 9.1e-05 22.9 4.5 1.8 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|257388125|ref|YP_003177898.1| - 0.00048 20.2 9.4 0.0031 17.6 8.6 2.5 2 1 1 3 3 2 2 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|257388125|ref|YP_003177898.1| - 0.0097 16.8 10.4 0.09 13.7 1.1 3.3 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|257388125|ref|YP_003177898.1| - 0.025 14.7 2.3 0.21 11.7 0.4 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_20 PF14691.6 gi|257388125|ref|YP_003177898.1| - 0.035 13.9 7.8 0.51 10.1 0.5 2.5 1 1 1 2 2 2 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_4 PF12800.7 gi|257388125|ref|YP_003177898.1| - 0.49 11.0 8.7 0.94 10.1 2.4 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4 PF00037.27 gi|257388125|ref|YP_003177898.1| - 1.8 8.5 9.7 6.2 6.8 3.1 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_3 PF12798.7 gi|257388125|ref|YP_003177898.1| - 3.5 8.8 11.9 2.1 9.5 0.4 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_18 PF13746.6 gi|257388125|ref|YP_003177898.1| - 3.9 7.7 12.2 3.5 7.9 0.3 2.8 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|257388125|ref|YP_003177898.1| - 4.4 7.5 7.6 8.1 6.7 2.2 2.7 2 0 0 2 2 2 0 4Fe-4S binding domain FAD_binding_2 PF00890.24 gi|257388126|ref|YP_003177899.1| - 3.4e-118 395.3 8.6 4.9e-118 394.8 8.6 1.2 1 0 0 1 1 1 1 FAD binding domain Succ_DH_flav_C PF02910.20 gi|257388126|ref|YP_003177899.1| - 1.3e-37 128.6 1.6 2.3e-37 127.8 1.6 1.4 1 0 0 1 1 1 1 Fumarate reductase flavoprotein C-term Pyr_redox_2 PF07992.14 gi|257388126|ref|YP_003177899.1| - 2.1e-07 30.5 4.5 0.00058 19.2 3.4 2.9 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|257388126|ref|YP_003177899.1| - 7.2e-05 21.7 0.4 7.2e-05 21.7 0.4 1.8 2 1 0 2 2 2 1 HI0933-like protein GIDA PF01134.22 gi|257388126|ref|YP_003177899.1| - 0.00022 20.5 3.6 0.00052 19.2 3.6 1.6 1 0 0 1 1 1 1 Glucose inhibited division protein A FAD_oxidored PF12831.7 gi|257388126|ref|YP_003177899.1| - 0.00029 20.3 11.2 0.00087 18.8 3.9 2.3 2 0 0 2 2 2 2 FAD dependent oxidoreductase DAO PF01266.24 gi|257388126|ref|YP_003177899.1| - 0.0023 17.6 8.3 0.039 13.5 7.2 2.5 1 1 0 1 1 1 1 FAD dependent oxidoreductase Thi4 PF01946.17 gi|257388126|ref|YP_003177899.1| - 0.0054 16.0 1.3 0.05 12.8 0.3 2.7 3 0 0 3 3 3 1 Thi4 family FAD_binding_3 PF01494.19 gi|257388126|ref|YP_003177899.1| - 0.02 14.2 1.0 0.02 14.2 1.0 1.7 2 0 0 2 2 2 0 FAD binding domain Pyr_redox_3 PF13738.6 gi|257388126|ref|YP_003177899.1| - 0.049 12.9 0.6 0.14 11.4 0.2 1.9 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase AlaDh_PNT_C PF01262.21 gi|257388126|ref|YP_003177899.1| - 0.6 9.4 3.8 0.29 10.4 1.5 1.7 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain Amidohydro_1 PF01979.20 gi|257388127|ref|YP_003177900.1| - 4.9e-61 206.9 1.6 5.7e-61 206.7 1.6 1.0 1 0 0 1 1 1 1 Amidohydrolase family A_deaminase PF00962.22 gi|257388127|ref|YP_003177900.1| - 0.0025 17.2 0.0 0.0042 16.5 0.0 1.3 1 0 0 1 1 1 1 Adenosine/AMP deaminase HTH_31 PF13560.6 gi|257388128|ref|YP_003177901.1| - 2.9e-05 24.3 2.4 3.9e-05 23.9 0.6 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_37 PF13744.6 gi|257388128|ref|YP_003177901.1| - 0.0024 17.8 0.5 0.12 12.3 0.0 2.2 1 1 1 2 2 2 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|257388128|ref|YP_003177901.1| - 0.013 15.5 0.0 0.021 14.9 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix HTH_25 PF13413.6 gi|257388128|ref|YP_003177901.1| - 0.025 14.4 0.1 0.041 13.7 0.1 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_19 PF12844.7 gi|257388128|ref|YP_003177901.1| - 0.054 13.5 0.0 0.094 12.7 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain Acyl-CoA_dh_1 PF00441.24 gi|257388129|ref|YP_003177902.1| - 2.3e-49 167.5 3.2 4.2e-49 166.6 3.2 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|257388129|ref|YP_003177902.1| - 4.3e-29 101.4 0.1 9e-29 100.4 0.1 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|257388129|ref|YP_003177902.1| - 1.5e-25 89.2 0.0 3.2e-25 88.2 0.0 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|257388129|ref|YP_003177902.1| - 3e-24 85.8 5.8 6.5e-24 84.7 5.8 1.6 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain HAD_2 PF13419.6 gi|257388130|ref|YP_003177903.1| - 1e-15 58.3 0.0 1.4e-14 54.6 0.0 2.0 1 1 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|257388130|ref|YP_003177903.1| - 1.2e-08 35.5 0.0 8.6e-06 26.2 0.0 2.1 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|257388130|ref|YP_003177903.1| - 6.7e-05 22.9 0.0 0.00017 21.6 0.0 1.6 1 0 0 1 1 1 1 HAD-hyrolase-like HAD PF12710.7 gi|257388130|ref|YP_003177903.1| - 0.00011 22.6 2.6 0.001 19.5 2.6 1.9 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase GpcrRhopsn4 PF10192.9 gi|257388131|ref|YP_003177904.1| - 0.021 14.2 1.1 0.025 14.0 1.1 1.1 1 0 0 1 1 1 0 Rhodopsin-like GPCR transmembrane domain PSI_PsaJ PF01701.18 gi|257388131|ref|YP_003177904.1| - 1.5 9.4 4.6 20 5.8 1.8 2.4 2 1 0 2 2 2 0 Photosystem I reaction centre subunit IX / PsaJ Pantoate_transf PF02548.15 gi|257388132|ref|YP_003177905.1| - 4.7e-94 314.6 0.5 5.2e-94 314.4 0.5 1.0 1 0 0 1 1 1 1 Ketopantoate hydroxymethyltransferase PEP_mutase PF13714.6 gi|257388132|ref|YP_003177905.1| - 8.5e-07 28.7 1.6 7.9e-06 25.5 1.5 2.5 1 1 0 1 1 1 1 Phosphoenolpyruvate phosphomutase Amidohydro_2 PF04909.14 gi|257388132|ref|YP_003177905.1| - 0.052 13.3 0.1 0.075 12.8 0.1 1.4 1 0 0 1 1 1 0 Amidohydrolase Abhydrolase_6 PF12697.7 gi|257388133|ref|YP_003177906.1| - 8.7e-16 59.2 9.9 1e-15 58.9 9.9 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|257388133|ref|YP_003177906.1| - 2.8e-15 56.2 1.0 9e-15 54.6 1.0 1.8 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_1 PF00561.20 gi|257388133|ref|YP_003177906.1| - 4.6e-14 52.7 0.1 1.1e-12 48.2 0.1 2.1 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_2 PF02230.16 gi|257388133|ref|YP_003177906.1| - 0.00055 19.8 0.0 0.013 15.3 0.0 2.3 2 1 0 2 2 2 1 Phospholipase/Carboxylesterase Abhydrolase_4 PF08386.10 gi|257388133|ref|YP_003177906.1| - 0.001 19.1 0.0 0.0025 17.9 0.0 1.6 1 0 0 1 1 1 1 TAP-like protein Esterase PF00756.20 gi|257388133|ref|YP_003177906.1| - 0.035 13.7 0.2 0.065 12.9 0.2 1.4 1 0 0 1 1 1 0 Putative esterase Abhydrolase_5 PF12695.7 gi|257388133|ref|YP_003177906.1| - 0.15 11.8 0.0 3.3 7.5 0.0 2.1 2 0 0 2 2 2 0 Alpha/beta hydrolase family PGAP1 PF07819.13 gi|257388133|ref|YP_003177906.1| - 0.22 11.2 0.1 2.5 7.7 0.1 2.4 2 1 1 3 3 3 0 PGAP1-like protein AAA PF00004.29 gi|257388135|ref|YP_003177908.1| - 2e-100 332.4 0.0 4.2e-49 166.3 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|257388135|ref|YP_003177908.1| - 1.6e-27 95.0 4.6 2.8e-15 55.8 0.8 3.0 2 1 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|257388135|ref|YP_003177908.1| - 8.4e-25 86.8 0.2 8.3e-24 83.6 0.3 2.6 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), N-terminal domain AAA_2 PF07724.14 gi|257388135|ref|YP_003177908.1| - 1.7e-19 70.6 0.1 6.8e-10 39.3 0.0 2.4 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) RuvB_N PF05496.12 gi|257388135|ref|YP_003177908.1| - 1.1e-16 61.0 0.0 3.7e-08 33.3 0.0 2.6 3 0 0 3 3 2 2 Holliday junction DNA helicase RuvB P-loop domain CDC48_2 PF02933.17 gi|257388135|ref|YP_003177908.1| - 2.4e-16 59.2 0.4 8.7e-16 57.5 0.4 2.0 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), domain 2 AAA_16 PF13191.6 gi|257388135|ref|YP_003177908.1| - 7.2e-14 52.5 0.1 1.5e-05 25.5 0.0 3.6 2 2 0 2 2 2 2 AAA ATPase domain AAA_5 PF07728.14 gi|257388135|ref|YP_003177908.1| - 2.6e-11 43.7 1.1 0.00021 21.3 0.1 4.5 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) TIP49 PF06068.13 gi|257388135|ref|YP_003177908.1| - 3.3e-11 43.0 0.4 7e-05 22.2 0.0 3.3 3 0 0 3 3 3 2 TIP49 P-loop domain AAA_22 PF13401.6 gi|257388135|ref|YP_003177908.1| - 4.8e-11 43.1 0.2 0.0014 18.9 0.0 3.6 2 2 0 2 2 2 2 AAA domain AAA_14 PF13173.6 gi|257388135|ref|YP_003177908.1| - 5.2e-11 42.7 0.0 0.00012 22.2 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_33 PF13671.6 gi|257388135|ref|YP_003177908.1| - 7e-10 39.2 0.0 0.00032 20.9 0.0 2.8 2 0 0 2 2 2 2 AAA domain RNA_helicase PF00910.22 gi|257388135|ref|YP_003177908.1| - 3e-08 34.0 0.0 0.0083 16.5 0.0 2.6 2 1 0 2 2 2 2 RNA helicase IstB_IS21 PF01695.17 gi|257388135|ref|YP_003177908.1| - 4.3e-08 33.1 0.0 0.0022 17.8 0.0 2.4 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_7 PF12775.7 gi|257388135|ref|YP_003177908.1| - 7.9e-08 32.0 0.0 0.017 14.7 0.0 2.8 2 1 0 2 2 2 2 P-loop containing dynein motor region AAA_18 PF13238.6 gi|257388135|ref|YP_003177908.1| - 6.2e-07 30.0 0.0 0.041 14.4 0.0 3.1 3 0 0 3 3 2 2 AAA domain Mg_chelatase PF01078.21 gi|257388135|ref|YP_003177908.1| - 8.6e-07 28.5 0.4 0.03 13.7 0.0 2.5 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_3 PF07726.11 gi|257388135|ref|YP_003177908.1| - 1.3e-06 28.3 0.0 0.017 15.0 0.0 2.7 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) DUF815 PF05673.13 gi|257388135|ref|YP_003177908.1| - 1.4e-06 27.6 0.0 0.0048 16.1 0.0 2.9 2 1 0 2 2 2 2 Protein of unknown function (DUF815) ATPase PF06745.13 gi|257388135|ref|YP_003177908.1| - 1.9e-06 27.4 0.9 0.28 10.5 0.0 4.0 3 1 1 4 4 4 2 KaiC AAA_28 PF13521.6 gi|257388135|ref|YP_003177908.1| - 2.5e-06 27.8 0.0 0.058 13.6 0.0 2.9 2 0 0 2 2 2 2 AAA domain TsaE PF02367.17 gi|257388135|ref|YP_003177908.1| - 3.2e-06 27.2 0.0 0.11 12.5 0.0 2.4 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_25 PF13481.6 gi|257388135|ref|YP_003177908.1| - 6.6e-06 25.8 3.4 0.66 9.5 0.0 4.1 3 1 1 4 4 4 2 AAA domain Sigma54_activat PF00158.26 gi|257388135|ref|YP_003177908.1| - 6.8e-06 25.9 0.1 0.15 11.7 0.0 3.1 2 1 0 2 2 2 2 Sigma-54 interaction domain ABC_tran PF00005.27 gi|257388135|ref|YP_003177908.1| - 1e-05 26.1 0.0 0.1 13.1 0.0 2.8 2 0 0 2 2 2 2 ABC transporter NACHT PF05729.12 gi|257388135|ref|YP_003177908.1| - 1e-05 25.5 0.2 0.5 10.3 0.0 3.8 3 1 1 4 4 4 2 NACHT domain Zeta_toxin PF06414.12 gi|257388135|ref|YP_003177908.1| - 1.3e-05 24.6 0.2 0.35 10.1 0.0 3.3 3 0 0 3 3 3 2 Zeta toxin AAA_24 PF13479.6 gi|257388135|ref|YP_003177908.1| - 1.6e-05 24.7 0.0 0.066 12.9 0.0 2.8 2 0 0 2 2 2 2 AAA domain AAA_30 PF13604.6 gi|257388135|ref|YP_003177908.1| - 2.2e-05 24.3 0.0 0.14 11.9 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_11 PF13086.6 gi|257388135|ref|YP_003177908.1| - 2.6e-05 24.1 0.0 0.13 12.1 0.0 2.4 2 0 0 2 2 2 2 AAA domain PhoH PF02562.16 gi|257388135|ref|YP_003177908.1| - 2.7e-05 23.7 0.1 0.1 12.0 0.0 2.5 2 0 0 2 2 2 2 PhoH-like protein DUF2075 PF09848.9 gi|257388135|ref|YP_003177908.1| - 9e-05 21.9 0.0 0.25 10.5 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) NB-ARC PF00931.22 gi|257388135|ref|YP_003177908.1| - 0.00011 21.6 0.0 0.51 9.5 0.0 2.5 2 0 0 2 2 2 2 NB-ARC domain Vps4_C PF09336.10 gi|257388135|ref|YP_003177908.1| - 0.00013 21.9 0.6 0.35 10.9 0.1 2.8 2 0 0 2 2 2 2 Vps4 C terminal oligomerisation domain Bac_DnaA PF00308.18 gi|257388135|ref|YP_003177908.1| - 0.00022 21.2 0.0 0.23 11.3 0.0 2.6 2 0 0 2 2 2 1 Bacterial dnaA protein Parvo_NS1 PF01057.17 gi|257388135|ref|YP_003177908.1| - 0.00026 20.2 0.0 0.38 9.8 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 NTPase_1 PF03266.15 gi|257388135|ref|YP_003177908.1| - 0.00032 20.7 0.5 1.1 9.1 0.0 3.5 2 1 1 3 3 3 1 NTPase AAA_17 PF13207.6 gi|257388135|ref|YP_003177908.1| - 0.00034 21.0 0.2 1.9 8.9 0.0 3.1 3 0 0 3 3 2 2 AAA domain AAA_19 PF13245.6 gi|257388135|ref|YP_003177908.1| - 0.00041 20.7 0.8 1.1 9.6 0.0 2.9 2 1 1 3 3 2 1 AAA domain Sigma54_activ_2 PF14532.6 gi|257388135|ref|YP_003177908.1| - 0.00082 19.5 0.0 2.1 8.4 0.0 2.7 2 0 0 2 2 2 2 Sigma-54 interaction domain ATPase_2 PF01637.18 gi|257388135|ref|YP_003177908.1| - 0.0019 18.2 0.0 1.1 9.2 0.0 3.0 2 2 0 2 2 2 1 ATPase domain predominantly from Archaea Guanylate_kin PF00625.21 gi|257388135|ref|YP_003177908.1| - 0.0022 17.7 0.9 30 4.2 0.0 4.4 3 1 1 4 4 4 0 Guanylate kinase T2SSE PF00437.20 gi|257388135|ref|YP_003177908.1| - 0.0055 15.8 0.0 2 7.4 0.0 2.6 2 0 0 2 2 2 1 Type II/IV secretion system protein ResIII PF04851.15 gi|257388135|ref|YP_003177908.1| - 0.006 16.6 0.0 3.4 7.6 0.0 2.7 2 2 0 2 2 2 0 Type III restriction enzyme, res subunit Cytidylate_kin PF02224.18 gi|257388135|ref|YP_003177908.1| - 0.016 14.9 0.3 6.9 6.3 0.0 2.9 3 0 0 3 3 3 0 Cytidylate kinase AFG1_ATPase PF03969.16 gi|257388135|ref|YP_003177908.1| - 0.017 14.1 0.0 2.7 6.8 0.0 2.4 2 0 0 2 2 2 0 AFG1-like ATPase Zot PF05707.12 gi|257388135|ref|YP_003177908.1| - 0.017 14.8 0.0 1.1 8.9 0.0 3.1 3 0 0 3 3 3 0 Zonular occludens toxin (Zot) Rad17 PF03215.15 gi|257388135|ref|YP_003177908.1| - 0.036 14.0 0.0 9.7 6.1 0.0 2.5 2 1 0 2 2 2 0 Rad17 P-loop domain AAA_29 PF13555.6 gi|257388135|ref|YP_003177908.1| - 0.054 13.2 0.0 11 5.9 0.0 2.5 2 0 0 2 2 2 0 P-loop containing region of AAA domain CPT PF07931.12 gi|257388135|ref|YP_003177908.1| - 0.06 13.2 0.0 10 5.9 0.0 2.5 2 0 0 2 2 2 0 Chloramphenicol phosphotransferase-like protein Torsin PF06309.11 gi|257388135|ref|YP_003177908.1| - 0.076 13.1 0.0 6.1 7.0 0.0 2.4 2 0 0 2 2 2 0 Torsin KAP_NTPase PF07693.14 gi|257388135|ref|YP_003177908.1| - 0.089 12.0 0.1 13 4.9 0.0 3.1 2 2 1 3 3 3 0 KAP family P-loop domain Viral_helicase1 PF01443.18 gi|257388135|ref|YP_003177908.1| - 0.15 11.8 0.0 12 5.5 0.0 2.2 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase COOH-NH2_lig PF14395.6 gi|257388135|ref|YP_003177908.1| - 0.32 10.2 0.8 5.2 6.2 0.0 2.6 3 0 0 3 3 3 0 Phage phiEco32-like COOH.NH2 ligase-type 2 DUF975 PF06161.11 gi|257388137|ref|YP_003177910.1| - 4.9e-06 26.5 1.0 4.9e-06 26.5 1.0 2.1 1 1 1 2 2 2 1 Protein of unknown function (DUF975) GPDPase_memb PF10110.9 gi|257388137|ref|YP_003177910.1| - 0.00012 21.0 8.7 0.00018 20.4 2.9 2.3 1 1 1 2 2 2 2 Membrane domain of glycerophosphoryl diester phosphodiesterase Form_Nir_trans PF01226.17 gi|257388137|ref|YP_003177910.1| - 0.00063 19.2 3.9 0.00063 19.2 3.9 2.1 1 1 1 2 2 2 1 Formate/nitrite transporter UPF0259 PF06790.11 gi|257388137|ref|YP_003177910.1| - 0.016 15.0 10.2 0.031 14.0 10.2 1.5 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0259) DUF4379 PF14311.6 gi|257388138|ref|YP_003177911.1| - 0.0095 16.3 0.5 0.0095 16.3 0.5 2.3 2 1 1 3 3 3 1 Probable Zinc-ribbon domain DnaJ_CXXCXGXG PF00684.19 gi|257388138|ref|YP_003177911.1| - 0.011 16.1 0.1 0.011 16.1 0.1 2.3 2 1 0 2 2 2 0 DnaJ central domain PHD PF00628.29 gi|257388138|ref|YP_003177911.1| - 0.017 15.0 15.5 0.017 15.0 4.7 2.8 2 1 0 2 2 2 0 PHD-finger zinc-ribbons_6 PF07191.12 gi|257388138|ref|YP_003177911.1| - 0.21 11.6 10.2 0.26 11.3 1.0 2.4 2 1 0 2 2 2 0 zinc-ribbons Rubredoxin_2 PF18073.1 gi|257388138|ref|YP_003177911.1| - 0.41 10.4 0.2 0.41 10.4 0.2 3.8 4 0 0 4 4 4 0 Rubredoxin metal binding domain TackOD1 PF18551.1 gi|257388138|ref|YP_003177911.1| - 1.3 8.7 9.4 0.83 9.3 1.2 2.8 2 1 0 2 2 2 0 Thaumarchaeal output domain 1 Cytochrom_c3_2 PF14537.6 gi|257388138|ref|YP_003177911.1| - 4 8.0 9.3 19 5.8 9.2 1.9 1 1 0 1 1 1 0 Cytochrome c3 Methyltransf_25 PF13649.6 gi|257388139|ref|YP_003177912.1| - 6.8e-07 29.9 0.0 1.1e-06 29.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|257388139|ref|YP_003177912.1| - 1.1e-05 25.9 0.0 1.9e-05 25.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|257388139|ref|YP_003177912.1| - 0.00094 19.1 0.0 0.0012 18.7 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain DUF938 PF06080.12 gi|257388139|ref|YP_003177912.1| - 0.004 16.9 0.0 0.0062 16.3 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF938) Methyltransf_31 PF13847.6 gi|257388139|ref|YP_003177912.1| - 0.015 15.1 0.0 0.022 14.6 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_12 PF08242.12 gi|257388139|ref|YP_003177912.1| - 0.089 13.5 0.0 0.13 13.0 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain DREV PF05219.12 gi|257388139|ref|YP_003177912.1| - 0.24 10.4 0.0 0.48 9.5 0.0 1.6 1 1 0 1 1 1 0 DREV methyltransferase AhpC-TSA PF00578.21 gi|257388140|ref|YP_003177913.1| - 6.7e-39 132.6 0.0 7.7e-39 132.4 0.0 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|257388140|ref|YP_003177913.1| - 1.1e-25 90.0 0.0 1.3e-25 89.8 0.0 1.0 1 0 0 1 1 1 1 Redoxin SCO1-SenC PF02630.14 gi|257388140|ref|YP_003177913.1| - 0.011 15.6 0.0 0.02 14.8 0.0 1.5 1 1 0 1 1 1 0 SCO1/SenC YbjN PF10722.9 gi|257388140|ref|YP_003177913.1| - 0.033 14.2 0.0 0.13 12.3 0.0 1.9 2 0 0 2 2 2 0 Putative bacterial sensory transduction regulator DUF899 PF05988.12 gi|257388140|ref|YP_003177913.1| - 0.035 13.6 0.0 0.042 13.4 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF899) DUF420 PF04238.12 gi|257388141|ref|YP_003177914.1| - 1.3e-34 119.4 4.7 1.3e-34 119.4 4.7 1.3 2 0 0 2 2 2 1 Protein of unknown function (DUF420) DUF2306 PF10067.9 gi|257388141|ref|YP_003177914.1| - 0.0057 16.9 9.6 0.01 16.1 6.4 2.5 1 1 1 2 2 2 1 Predicted membrane protein (DUF2306) Cytochrom_B561 PF03188.16 gi|257388141|ref|YP_003177914.1| - 0.025 14.7 7.0 0.16 12.1 0.6 2.4 2 1 1 3 3 3 0 Eukaryotic cytochrome b561 Otopetrin PF03189.13 gi|257388141|ref|YP_003177914.1| - 0.25 10.1 0.4 0.3 9.8 0.4 1.1 1 0 0 1 1 1 0 Otopetrin GATase_7 PF13537.6 gi|257388142|ref|YP_003177915.1| - 2.6e-18 66.1 0.0 9.7e-18 64.3 0.0 1.9 2 0 0 2 2 2 1 Glutamine amidotransferase domain GATase_6 PF13522.6 gi|257388142|ref|YP_003177915.1| - 1.2e-17 64.4 0.0 3.7e-17 62.8 0.0 1.8 2 0 0 2 2 2 1 Glutamine amidotransferase domain Pribosyltran PF00156.27 gi|257388142|ref|YP_003177915.1| - 3.4e-07 29.9 0.1 7.7e-07 28.8 0.1 1.5 1 0 0 1 1 1 1 Phosphoribosyl transferase domain GATase_4 PF13230.6 gi|257388142|ref|YP_003177915.1| - 0.00059 18.8 0.0 0.0013 17.7 0.0 1.5 2 0 0 2 2 2 1 Glutamine amidotransferases class-II Ribosomal_L37e PF01907.19 gi|257388143|ref|YP_003177916.1| - 7.6e-22 77.2 12.2 8.2e-22 77.1 12.2 1.0 1 0 0 1 1 1 1 Ribosomal protein L37e zf-RanBP PF00641.18 gi|257388143|ref|YP_003177916.1| - 0.0015 17.8 0.9 0.7 9.3 0.1 2.2 2 0 0 2 2 2 2 Zn-finger in Ran binding protein and others zf-piccolo PF05715.13 gi|257388143|ref|YP_003177916.1| - 0.0047 17.0 4.3 0.017 15.2 4.3 1.8 1 1 0 1 1 1 1 Piccolo Zn-finger DZR PF12773.7 gi|257388143|ref|YP_003177916.1| - 0.0065 16.5 2.6 0.008 16.2 2.6 1.2 1 0 0 1 1 1 1 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|257388143|ref|YP_003177916.1| - 0.077 12.4 2.2 6.2 6.4 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain HypA PF01155.19 gi|257388143|ref|YP_003177916.1| - 0.091 12.8 2.2 0.096 12.7 2.2 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zinc_ribbon_2 PF13240.6 gi|257388143|ref|YP_003177916.1| - 0.13 12.0 6.4 0.6 9.9 5.9 2.0 1 1 1 2 2 2 0 zinc-ribbon domain OrfB_Zn_ribbon PF07282.11 gi|257388143|ref|YP_003177916.1| - 0.34 10.9 6.8 0.45 10.5 6.8 1.3 1 1 0 1 1 1 0 Putative transposase DNA-binding domain Rubredoxin_2 PF18073.1 gi|257388143|ref|YP_003177916.1| - 0.5 10.1 5.6 3.1 7.6 0.5 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain zn-ribbon_14 PF16503.5 gi|257388143|ref|YP_003177916.1| - 1.3 8.6 6.8 2.4 7.8 6.8 1.5 1 1 0 1 1 1 0 Zinc-ribbon DUF983 PF06170.12 gi|257388143|ref|YP_003177916.1| - 4.4 7.8 4.3 19 5.8 0.6 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF983) DUF2688 PF10892.8 gi|257388143|ref|YP_003177916.1| - 5.1 6.6 8.3 21 4.7 8.6 1.8 1 1 1 2 2 2 0 Protein of unknown function (DUF2688) LSM PF01423.22 gi|257388144|ref|YP_003177917.1| - 3.7e-15 55.4 0.4 5.7e-13 48.4 0.4 2.0 1 1 0 1 1 1 1 LSM domain SM-ATX PF14438.6 gi|257388144|ref|YP_003177917.1| - 1.8e-05 24.8 0.2 0.00013 22.0 0.1 1.9 1 1 1 2 2 2 1 Ataxin 2 SM domain DUF150_C PF17384.2 gi|257388144|ref|YP_003177917.1| - 0.0026 17.9 0.0 0.0031 17.6 0.0 1.1 1 0 0 1 1 1 1 RimP C-terminal SH3 domain Hfq PF17209.3 gi|257388144|ref|YP_003177917.1| - 0.018 14.7 0.0 0.019 14.6 0.0 1.1 1 0 0 1 1 1 0 Hfq protein DUF2642 PF10842.8 gi|257388144|ref|YP_003177917.1| - 0.043 13.7 0.0 0.058 13.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2642) Peptidase_M42 PF05343.14 gi|257388145|ref|YP_003177918.1| - 1.2e-85 287.1 1.4 1.4e-85 286.9 1.4 1.0 1 0 0 1 1 1 1 M42 glutamyl aminopeptidase Peptidase_M20 PF01546.28 gi|257388145|ref|YP_003177918.1| - 4e-11 43.0 0.1 7.4e-11 42.1 0.1 1.4 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 Peptidase_M18 PF02127.15 gi|257388145|ref|YP_003177918.1| - 7.4e-08 31.6 0.0 0.00036 19.5 0.0 2.2 2 0 0 2 2 2 2 Aminopeptidase I zinc metalloprotease (M18) Zincin_2 PF10103.9 gi|257388149|ref|YP_003177922.1| - 2.3e-67 227.6 5.3 3.5e-35 121.8 0.8 2.0 1 1 1 2 2 2 2 Zincin-like metallopeptidase Nup214_FG PF18617.1 gi|257388150|ref|YP_003177923.1| - 0.06 13.9 0.2 0.45 11.1 0.0 2.2 2 0 0 2 2 2 0 Nucleoporin Nup214 phenylalanine-glycine (FG) domain PilN_bio_d PF18222.1 gi|257388150|ref|YP_003177923.1| - 0.091 13.2 0.2 0.27 11.7 0.1 1.7 1 1 1 2 2 2 0 PilN biogenesis protein dimerization domain Auts2 PF15336.6 gi|257388150|ref|YP_003177923.1| - 0.097 12.8 0.1 0.13 12.4 0.1 1.2 1 0 0 1 1 1 0 Autism susceptibility gene 2 protein KCT2 PF17818.1 gi|257388152|ref|YP_003177925.1| - 0.51 10.5 2.4 0.68 10.0 2.4 1.2 1 0 0 1 1 1 0 Keratinocyte-associated gene product DUF4129 PF13559.6 gi|257388153|ref|YP_003177926.1| - 4.6e-06 26.8 8.1 4.6e-06 26.8 8.1 3.1 3 1 0 3 3 3 1 Domain of unknown function (DUF4129) DUF4198 PF10670.9 gi|257388153|ref|YP_003177926.1| - 1.5e-05 25.5 0.4 0.11 12.9 0.0 3.2 3 0 0 3 3 3 2 Domain of unknown function (DUF4198) CarboxypepD_reg PF13620.6 gi|257388153|ref|YP_003177926.1| - 0.0035 17.6 7.2 0.061 13.6 0.3 3.7 2 1 1 3 3 3 1 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|257388153|ref|YP_003177926.1| - 0.0073 16.3 0.0 0.16 12.0 0.0 2.5 3 0 0 3 3 3 1 CarboxypepD_reg-like domain PEGA PF08308.11 gi|257388153|ref|YP_003177926.1| - 0.07 13.0 0.4 1.2 9.1 0.0 3.0 3 1 0 3 3 3 0 PEGA domain Big_1 PF02369.16 gi|257388153|ref|YP_003177926.1| - 0.1 12.6 6.0 2.1 8.4 0.9 3.8 3 1 0 3 3 3 0 Bacterial Ig-like domain (group 1) Glycos_transf_4 PF00953.21 gi|257388153|ref|YP_003177926.1| - 0.12 12.3 3.5 0.22 11.5 3.5 1.3 1 0 0 1 1 1 0 Glycosyl transferase family 4 DUF58 PF01882.18 gi|257388155|ref|YP_003177928.1| - 1.8e-20 73.0 0.9 4.3e-20 71.8 0.9 1.7 1 0 0 1 1 1 1 Protein of unknown function DUF58 DUF11 PF01345.18 gi|257388155|ref|YP_003177928.1| - 3.5e-07 30.4 1.1 1.3e-06 28.6 0.5 2.3 2 0 0 2 2 2 1 Domain of unknown function DUF11 NPCBM_assoc PF10633.9 gi|257388155|ref|YP_003177928.1| - 2.2e-05 24.6 0.9 6.1e-05 23.2 0.2 2.2 2 0 0 2 2 2 1 NPCBM-associated, NEW3 domain of alpha-galactosidase Phage_holin_2_4 PF16082.5 gi|257388156|ref|YP_003177929.1| - 2.4 8.0 0.0 2.4 8.0 0.0 3.5 4 0 0 4 4 4 0 Bacteriophage holin family, superfamily II-like AAA_3 PF07726.11 gi|257388157|ref|YP_003177930.1| - 2.4e-64 215.0 0.0 4.1e-64 214.3 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_2 PF17863.1 gi|257388157|ref|YP_003177930.1| - 1.7e-16 59.8 4.8 3.3e-16 58.9 4.8 1.5 1 0 0 1 1 1 1 AAA lid domain AAA_5 PF07728.14 gi|257388157|ref|YP_003177930.1| - 2.1e-16 60.2 0.0 3.9e-16 59.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|257388157|ref|YP_003177930.1| - 8.8e-08 32.7 0.0 5.7e-06 26.8 0.0 2.4 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Sigma54_activat PF00158.26 gi|257388157|ref|YP_003177930.1| - 1.8e-06 27.7 0.0 2e-05 24.4 0.0 2.2 1 1 0 1 1 1 1 Sigma-54 interaction domain RuvB_N PF05496.12 gi|257388157|ref|YP_003177930.1| - 0.00018 21.3 0.0 0.043 13.6 0.0 2.3 2 0 0 2 2 2 2 Holliday junction DNA helicase RuvB P-loop domain MCM PF00493.23 gi|257388157|ref|YP_003177930.1| - 0.00025 20.2 0.0 0.00035 19.7 0.0 1.3 1 0 0 1 1 1 1 MCM P-loop domain Mg_chelatase PF01078.21 gi|257388157|ref|YP_003177930.1| - 0.0054 16.1 0.1 3.4 7.0 0.0 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI AAA_2 PF07724.14 gi|257388157|ref|YP_003177930.1| - 0.028 14.5 0.0 0.083 13.0 0.0 1.8 1 1 0 1 1 1 0 AAA domain (Cdc48 subfamily) AAA_lid_8 PF17868.1 gi|257388157|ref|YP_003177930.1| - 0.031 14.2 0.0 0.069 13.1 0.0 1.5 1 0 0 1 1 1 0 AAA lid domain AAA_12 PF13087.6 gi|257388158|ref|YP_003177931.1| - 5.3e-41 140.4 0.0 7.8e-41 139.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain AAA_11 PF13086.6 gi|257388158|ref|YP_003177931.1| - 1.1e-36 126.9 0.2 8.6e-19 68.3 0.3 3.0 3 0 0 3 3 3 2 AAA domain AAA_30 PF13604.6 gi|257388158|ref|YP_003177931.1| - 1.2e-19 70.8 1.2 1.2e-19 70.8 1.2 2.7 3 0 0 3 3 3 1 AAA domain Dna2 PF08696.11 gi|257388158|ref|YP_003177931.1| - 1.1e-18 67.8 0.0 6.5e-17 62.0 0.0 2.2 1 1 0 1 1 1 1 DNA replication factor Dna2 AAA_19 PF13245.6 gi|257388158|ref|YP_003177931.1| - 1.3e-13 51.5 0.2 4e-13 49.9 0.1 1.9 2 0 0 2 2 2 1 AAA domain PDDEXK_1 PF12705.7 gi|257388158|ref|YP_003177931.1| - 6.4e-13 49.2 0.7 1.1e-12 48.4 0.0 1.7 2 0 0 2 2 1 1 PD-(D/E)XK nuclease superfamily Viral_helicase1 PF01443.18 gi|257388158|ref|YP_003177931.1| - 4e-08 33.3 0.0 0.015 15.1 0.0 3.2 3 0 0 3 3 3 3 Viral (Superfamily 1) RNA helicase AAA_16 PF13191.6 gi|257388158|ref|YP_003177931.1| - 4e-06 27.3 1.1 6.8e-05 23.3 0.2 2.9 2 1 0 2 2 2 1 AAA ATPase domain UvrD-helicase PF00580.21 gi|257388158|ref|YP_003177931.1| - 5.2e-06 26.2 0.0 8.2e-06 25.5 0.0 1.3 1 0 0 1 1 1 1 UvrD/REP helicase N-terminal domain DUF2075 PF09848.9 gi|257388158|ref|YP_003177931.1| - 4.8e-05 22.8 0.1 0.00027 20.3 0.0 2.1 2 1 0 2 2 2 1 Uncharacterized conserved protein (DUF2075) AAA_22 PF13401.6 gi|257388158|ref|YP_003177931.1| - 0.00022 21.5 0.0 0.0009 19.5 0.0 2.0 1 1 0 1 1 1 1 AAA domain UvrD_C_2 PF13538.6 gi|257388158|ref|YP_003177931.1| - 0.00027 20.7 0.0 0.00078 19.2 0.0 1.9 1 0 0 1 1 1 1 UvrD-like helicase C-terminal domain Helicase_RecD PF05127.14 gi|257388158|ref|YP_003177931.1| - 0.0025 17.7 0.1 0.0094 15.8 0.0 1.9 2 0 0 2 2 2 1 Helicase PIF1 PF05970.14 gi|257388158|ref|YP_003177931.1| - 0.0038 16.5 0.0 0.14 11.3 0.0 2.2 2 0 0 2 2 2 1 PIF1-like helicase AAA_33 PF13671.6 gi|257388158|ref|YP_003177931.1| - 0.005 17.0 0.3 0.33 11.1 0.0 2.8 2 0 0 2 2 2 1 AAA domain SRP54 PF00448.22 gi|257388158|ref|YP_003177931.1| - 0.0071 16.0 0.0 0.51 9.9 0.0 2.3 2 0 0 2 2 2 1 SRP54-type protein, GTPase domain ResIII PF04851.15 gi|257388158|ref|YP_003177931.1| - 0.0084 16.1 0.0 0.021 14.8 0.0 1.7 1 1 0 1 1 1 1 Type III restriction enzyme, res subunit AAA PF00004.29 gi|257388158|ref|YP_003177931.1| - 0.012 16.1 0.0 0.025 15.0 0.0 1.6 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.17 gi|257388158|ref|YP_003177931.1| - 0.016 14.9 0.0 0.18 11.5 0.0 2.4 2 1 0 2 2 2 0 IstB-like ATP binding protein AAA_24 PF13479.6 gi|257388158|ref|YP_003177931.1| - 0.041 13.6 0.0 0.081 12.6 0.0 1.4 1 0 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|257388158|ref|YP_003177931.1| - 0.042 12.9 0.0 0.072 12.1 0.0 1.3 1 0 0 1 1 1 0 Type II/IV secretion system protein Mg_chelatase PF01078.21 gi|257388158|ref|YP_003177931.1| - 0.068 12.5 0.0 0.15 11.4 0.0 1.5 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI NACHT PF05729.12 gi|257388158|ref|YP_003177931.1| - 0.13 12.1 0.0 0.31 10.9 0.0 1.6 1 0 0 1 1 1 0 NACHT domain TrwB_AAD_bind PF10412.9 gi|257388158|ref|YP_003177931.1| - 0.15 11.0 0.0 0.26 10.1 0.0 1.3 1 0 0 1 1 1 0 Type IV secretion-system coupling protein DNA-binding domain AAA_5 PF07728.14 gi|257388158|ref|YP_003177931.1| - 0.16 12.0 0.0 0.39 10.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) Zn-ribbon_8 PF09723.10 gi|257388159|ref|YP_003177932.1| - 0.00027 21.0 4.0 0.00034 20.7 4.0 1.1 1 0 0 1 1 1 1 Zinc ribbon domain HypA PF01155.19 gi|257388159|ref|YP_003177932.1| - 0.0025 17.8 1.9 0.0025 17.8 1.9 1.0 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-C2H2_11 PF16622.5 gi|257388159|ref|YP_003177932.1| - 0.0045 16.7 0.1 0.0045 16.7 0.1 1.6 2 0 0 2 2 2 1 zinc-finger C2H2-type zf-UBR PF02207.20 gi|257388159|ref|YP_003177932.1| - 0.014 15.5 1.2 0.016 15.3 1.2 1.1 1 0 0 1 1 1 0 Putative zinc finger in N-recognin (UBR box) zf-H2C2_2 PF13465.6 gi|257388159|ref|YP_003177932.1| - 0.1 13.1 2.0 5.2 7.7 0.6 2.1 2 0 0 2 2 2 0 Zinc-finger double domain zf-C2H2_3 PF13878.6 gi|257388159|ref|YP_003177932.1| - 0.16 11.8 5.1 1.9 8.4 0.7 2.1 1 1 1 2 2 2 0 zinc-finger of acetyl-transferase ESCO DUF1451 PF07295.11 gi|257388159|ref|YP_003177932.1| - 0.49 10.4 3.3 0.54 10.3 3.3 1.0 1 0 0 1 1 1 0 Zinc-ribbon containing domain DUF35_N PF12172.8 gi|257388159|ref|YP_003177932.1| - 6.5 6.7 11.5 1.3e+02 2.6 11.5 2.1 1 1 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) PAP2 PF01569.21 gi|257388160|ref|YP_003177933.1| - 7.4e-18 64.6 6.6 7.4e-18 64.6 6.6 2.3 2 1 1 3 3 3 2 PAP2 superfamily PAP2_3 PF14378.6 gi|257388160|ref|YP_003177933.1| - 0.00011 22.0 16.5 0.00011 22.0 16.5 2.6 2 1 0 2 2 2 1 PAP2 superfamily 7TMR-DISM_7TM PF07695.11 gi|257388160|ref|YP_003177933.1| - 0.012 15.6 7.3 0.15 11.9 1.4 2.3 1 1 1 2 2 2 0 7TM diverse intracellular signalling EamA PF00892.20 gi|257388160|ref|YP_003177933.1| - 0.17 12.0 0.2 0.17 12.0 0.2 3.2 3 1 0 3 3 3 0 EamA-like transporter family PAP2_C PF14360.6 gi|257388160|ref|YP_003177933.1| - 0.92 10.1 3.7 1.2 9.7 0.2 2.5 2 1 1 3 3 3 0 PAP2 superfamily C-terminal Bax1-I PF01027.20 gi|257388160|ref|YP_003177933.1| - 3.8 7.3 16.8 0.69 9.7 4.8 2.6 1 1 2 3 3 3 0 Inhibitor of apoptosis-promoting Bax1 bPH_2 PF03703.14 gi|257388161|ref|YP_003177934.1| - 1.6e-41 140.4 0.3 5.6e-19 68.1 0.0 3.3 3 0 0 3 3 3 3 Bacterial PH domain bPH_2 PF03703.14 gi|257388162|ref|YP_003177935.1| - 1e-15 57.7 0.3 1.4e-15 57.2 0.3 1.2 1 0 0 1 1 1 1 Bacterial PH domain Mito_morph_reg PF14972.6 gi|257388162|ref|YP_003177935.1| - 0.039 13.6 0.1 0.059 13.0 0.1 1.2 1 0 0 1 1 1 0 Mitochondrial morphogenesis regulator LPD23 PF18838.1 gi|257388162|ref|YP_003177935.1| - 0.15 11.9 0.1 0.26 11.1 0.1 1.4 1 0 0 1 1 1 0 Large polyvalent protein associated domain 23 DUF4781 PF16013.5 gi|257388162|ref|YP_003177935.1| - 0.39 9.5 5.0 0.56 9.0 5.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4781) DEAD_assoc PF08494.11 gi|257388163|ref|YP_003177936.1| - 5.5e-52 176.3 0.3 1.2e-51 175.3 0.3 1.6 1 0 0 1 1 1 1 DEAD/H associated DEAD PF00270.29 gi|257388163|ref|YP_003177936.1| - 2.2e-30 105.7 0.0 2.3e-29 102.4 0.0 2.2 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|257388163|ref|YP_003177936.1| - 1.2e-19 70.6 0.0 4.3e-18 65.7 0.0 2.4 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|257388163|ref|YP_003177936.1| - 1.3e-08 35.1 0.0 5.8e-08 32.9 0.0 1.9 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_19 PF13245.6 gi|257388163|ref|YP_003177936.1| - 0.003 17.9 0.1 0.0087 16.4 0.0 1.8 2 0 0 2 2 2 1 AAA domain DHDPS PF00701.22 gi|257388164|ref|YP_003177937.1| - 1.3e-61 207.9 0.0 1.5e-61 207.7 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family PA PF02225.22 gi|257388164|ref|YP_003177937.1| - 0.027 14.5 1.3 0.055 13.5 1.3 1.6 1 0 0 1 1 1 0 PA domain HTH_20 PF12840.7 gi|257388165|ref|YP_003177938.1| - 8.8e-12 44.9 0.0 1.5e-11 44.2 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|257388165|ref|YP_003177938.1| - 9.1e-08 31.9 0.0 2.1e-07 30.7 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|257388165|ref|YP_003177938.1| - 1.4e-07 31.0 0.0 2.5e-07 30.1 0.0 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|257388165|ref|YP_003177938.1| - 5.3e-05 23.0 0.0 9.1e-05 22.2 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.6 gi|257388165|ref|YP_003177938.1| - 0.0034 17.8 0.0 0.0077 16.7 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain Sigma70_r4 PF04545.16 gi|257388165|ref|YP_003177938.1| - 0.0044 16.5 0.0 0.0083 15.6 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 DUF2513 PF10711.9 gi|257388165|ref|YP_003177938.1| - 0.0076 16.5 0.0 0.012 15.9 0.0 1.3 1 0 0 1 1 1 1 Hypothetical protein (DUF2513) DUF3592 PF12158.8 gi|257388165|ref|YP_003177938.1| - 0.014 15.4 0.8 0.035 14.2 0.8 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF3592) HTH_Crp_2 PF13545.6 gi|257388165|ref|YP_003177938.1| - 0.038 14.0 0.0 0.066 13.2 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain MarR PF01047.22 gi|257388165|ref|YP_003177938.1| - 0.043 13.8 0.3 0.17 11.8 0.0 2.0 2 0 0 2 2 2 0 MarR family Sigma70_r3 PF04539.16 gi|257388165|ref|YP_003177938.1| - 0.047 13.8 0.0 0.11 12.6 0.0 1.7 1 0 0 1 1 1 0 Sigma-70 region 3 HTH_45 PF14947.6 gi|257388165|ref|YP_003177938.1| - 0.056 13.4 0.0 0.095 12.7 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix AzlD PF05437.12 gi|257388165|ref|YP_003177938.1| - 0.075 13.2 0.4 0.32 11.2 0.0 1.9 2 0 0 2 2 2 0 Branched-chain amino acid transport protein (AzlD) Lactamase_B_2 PF12706.7 gi|257388166|ref|YP_003177939.1| - 1.6e-19 70.3 1.6 1.9e-19 70.0 1.6 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|257388166|ref|YP_003177939.1| - 6.5e-13 49.1 1.2 1e-12 48.5 1.2 1.5 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_3 PF13483.6 gi|257388166|ref|YP_003177939.1| - 0.0013 18.7 0.0 0.0033 17.3 0.0 1.8 1 1 0 1 1 1 1 Beta-lactamase superfamily domain GAF_3 PF13492.6 gi|257388167|ref|YP_003177940.1| - 1.2e-19 70.9 1.5 2.3e-19 70.0 1.5 1.5 1 0 0 1 1 1 1 GAF domain HATPase_c PF02518.26 gi|257388167|ref|YP_003177940.1| - 3.1e-15 56.6 0.1 6.5e-15 55.6 0.1 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_2 PF13185.6 gi|257388167|ref|YP_003177940.1| - 8e-07 29.4 1.6 1.1e-06 28.9 0.7 1.8 2 0 0 2 2 2 1 GAF domain HisKA PF00512.25 gi|257388167|ref|YP_003177940.1| - 0.00012 22.1 1.5 0.00019 21.4 0.2 2.1 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain SPOB_a PF14689.6 gi|257388167|ref|YP_003177940.1| - 0.00013 21.6 0.0 0.0011 18.6 0.0 2.3 2 0 0 2 2 2 1 Sensor_kinase_SpoOB-type, alpha-helical domain HATPase_c_2 PF13581.6 gi|257388167|ref|YP_003177940.1| - 0.00026 21.0 0.8 0.0011 18.9 0.1 2.2 2 0 0 2 2 2 1 Histidine kinase-like ATPase domain HisKA_4TM PF16926.5 gi|257388167|ref|YP_003177940.1| - 0.00027 20.5 0.3 0.0007 19.2 0.3 1.6 1 1 0 1 1 1 1 Archaeal 4TM region of histidine kinase GAF PF01590.26 gi|257388167|ref|YP_003177940.1| - 0.014 16.0 0.1 0.028 15.1 0.1 1.5 1 0 0 1 1 1 0 GAF domain HATPase_c_5 PF14501.6 gi|257388167|ref|YP_003177940.1| - 0.035 14.0 0.0 0.17 11.8 0.0 2.1 1 1 0 1 1 1 0 GHKL domain eRF1_1 PF03463.15 gi|257388168|ref|YP_003177941.1| - 1.2e-27 96.4 0.0 2e-27 95.8 0.0 1.3 1 0 0 1 1 1 1 eRF1 domain 1 eRF1_3 PF03465.15 gi|257388168|ref|YP_003177941.1| - 3.8e-23 82.1 0.1 3.8e-23 82.1 0.1 2.2 3 0 0 3 3 3 1 eRF1 domain 3 eRF1_2 PF03464.15 gi|257388168|ref|YP_003177941.1| - 1.3e-08 35.2 0.1 1.3e-06 28.8 0.1 2.3 1 1 0 1 1 1 1 eRF1 domain 2 Pyr_redox_2 PF07992.14 gi|257388169|ref|YP_003177942.1| - 8.2e-31 107.3 1.2 8.2e-31 107.3 1.2 1.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|257388169|ref|YP_003177942.1| - 3.6e-11 43.5 4.3 6e-09 36.3 0.3 3.1 3 1 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|257388169|ref|YP_003177942.1| - 6e-05 22.8 6.3 0.024 14.2 0.1 3.2 2 1 1 3 3 3 2 FAD dependent oxidoreductase UDPG_MGDP_dh_N PF03721.14 gi|257388169|ref|YP_003177942.1| - 0.0089 15.6 0.0 0.064 12.8 0.0 2.1 2 0 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain TrkA_N PF02254.18 gi|257388169|ref|YP_003177942.1| - 0.032 14.5 0.1 0.37 11.1 0.0 2.4 2 0 0 2 2 2 0 TrkA-N domain NAD_binding_9 PF13454.6 gi|257388169|ref|YP_003177942.1| - 0.036 14.0 4.0 1.3 9.0 0.0 3.7 4 0 0 4 4 4 0 FAD-NAD(P)-binding Lycopene_cycl PF05834.12 gi|257388169|ref|YP_003177942.1| - 0.16 11.0 0.5 1.1 8.2 0.0 2.2 2 0 0 2 2 2 0 Lycopene cyclase protein NAD_binding_8 PF13450.6 gi|257388169|ref|YP_003177942.1| - 0.69 10.2 0.0 0.69 10.2 0.0 2.9 3 0 0 3 3 3 0 NAD(P)-binding Rossmann-like domain RHS_repeat PF05593.14 gi|257388169|ref|YP_003177942.1| - 1.4 9.5 0.0 1.4 9.5 0.0 3.1 4 0 0 4 4 4 0 RHS Repeat Prot_ATP_ID_OB PF16450.5 gi|257388170|ref|YP_003177943.1| - 0.016 15.2 0.0 0.029 14.3 0.0 1.4 1 0 0 1 1 1 0 Proteasomal ATPase OB C-terminal domain PAG PF15347.6 gi|257388170|ref|YP_003177943.1| - 0.022 13.8 0.0 0.027 13.5 0.0 1.1 1 0 0 1 1 1 0 Phosphoprotein associated with glycosphingolipid-enriched Acetyltransf_1 PF00583.25 gi|257388172|ref|YP_003177945.1| - 5.7e-11 42.7 0.0 1.1e-10 41.8 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.7 gi|257388172|ref|YP_003177945.1| - 1.8e-08 34.6 0.0 7e-08 32.7 0.0 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|257388172|ref|YP_003177945.1| - 3.3e-07 30.6 0.0 7.4e-07 29.5 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|257388172|ref|YP_003177945.1| - 0.00035 20.5 0.0 0.0009 19.2 0.0 1.7 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|257388172|ref|YP_003177945.1| - 0.00068 20.3 0.1 0.001 19.7 0.1 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|257388172|ref|YP_003177945.1| - 0.0018 18.3 0.0 0.0043 17.1 0.0 1.6 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_9 PF13527.7 gi|257388172|ref|YP_003177945.1| - 0.0048 17.0 0.1 0.023 14.8 0.1 2.1 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain DUF4821 PF16092.5 gi|257388172|ref|YP_003177945.1| - 0.048 13.3 0.1 0.08 12.6 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4821) UBA_4 PF14555.6 gi|257388172|ref|YP_003177945.1| - 0.12 12.2 0.0 0.25 11.2 0.0 1.5 1 0 0 1 1 1 0 UBA-like domain Isochorismatase PF00857.20 gi|257388173|ref|YP_003177946.1| - 2.3e-34 119.1 0.0 2.7e-34 118.9 0.0 1.0 1 0 0 1 1 1 1 Isochorismatase family YqcI_YcgG PF08892.11 gi|257388174|ref|YP_003177947.1| - 2.1e-74 249.9 0.0 2.5e-74 249.7 0.0 1.0 1 0 0 1 1 1 1 YqcI/YcgG family GHMP_kinases_N PF00288.26 gi|257388175|ref|YP_003177948.1| - 6.2e-07 29.6 0.6 1.6e-06 28.3 0.6 1.7 1 0 0 1 1 1 1 GHMP kinases N terminal domain MDD_C PF18376.1 gi|257388175|ref|YP_003177948.1| - 0.0001 22.1 0.0 0.00015 21.5 0.0 1.2 1 0 0 1 1 1 1 Mevalonate 5-diphosphate decarboxylase C-terminal domain TarH PF02203.15 gi|257388175|ref|YP_003177948.1| - 0.12 12.3 0.6 0.21 11.5 0.6 1.3 1 0 0 1 1 1 0 Tar ligand binding domain homologue Copper-bind PF00127.20 gi|257388176|ref|YP_003177949.1| - 9.2e-18 64.5 0.1 1.5e-17 63.8 0.1 1.3 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.6 gi|257388176|ref|YP_003177949.1| - 2.4e-05 24.4 0.0 0.0086 16.2 0.0 2.0 2 0 0 2 2 2 2 Cupredoxin-like domain Acetyltransf_9 PF13527.7 gi|257388177|ref|YP_003177950.1| - 5.5e-23 81.4 0.0 3e-22 79.1 0.0 2.0 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|257388177|ref|YP_003177950.1| - 0.13 12.5 0.0 1.1 9.5 0.0 2.3 2 0 0 2 2 2 0 Acetyltransferase (GNAT) family Ribosomal_S3Ae PF01015.18 gi|257388178|ref|YP_003177951.1| - 1.5e-59 201.0 1.4 1.7e-59 200.8 1.4 1.0 1 0 0 1 1 1 1 Ribosomal S3Ae family Ribosomal_S13_N PF08069.12 gi|257388181|ref|YP_003177954.1| - 6.5e-23 80.5 0.1 1e-22 79.9 0.1 1.3 1 0 0 1 1 1 1 Ribosomal S13/S15 N-terminal domain Ribosomal_S15 PF00312.22 gi|257388181|ref|YP_003177954.1| - 3.3e-14 52.9 1.2 5.2e-14 52.2 1.2 1.3 1 0 0 1 1 1 1 Ribosomal protein S15 DUF4298 PF14131.6 gi|257388181|ref|YP_003177954.1| - 0.037 14.0 1.0 0.2 11.6 0.2 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4298) Bactofilin PF04519.13 gi|257388182|ref|YP_003177955.1| - 0.0032 17.7 4.4 0.0032 17.7 4.4 3.2 3 0 0 3 3 3 1 Polymer-forming cytoskeletal ADH_zinc_N PF00107.26 gi|257388182|ref|YP_003177955.1| - 0.012 15.6 1.1 0.39 10.7 0.0 3.2 3 0 0 3 3 3 0 Zinc-binding dehydrogenase DUF2807 PF10988.8 gi|257388182|ref|YP_003177955.1| - 0.021 14.6 12.1 0.019 14.8 7.5 2.8 2 0 0 2 2 2 0 Putative auto-transporter adhesin, head GIN domain Pilin_N PF07790.11 gi|257388183|ref|YP_003177956.1| - 0.03 15.3 2.9 0.073 14.0 2.9 1.8 1 1 0 1 1 1 0 Archaeal Type IV pilin, N-terminal Phasin PF05597.11 gi|257388184|ref|YP_003177957.1| - 0.064 13.3 0.0 0.092 12.8 0.0 1.2 1 0 0 1 1 1 0 Poly(hydroxyalcanoate) granule associated protein (phasin) DUF1571 PF07608.11 gi|257388186|ref|YP_003177959.1| - 0.072 12.5 0.0 0.11 11.9 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF1571) CARDB PF07705.11 gi|257388188|ref|YP_003177961.1| - 6.7e-21 74.5 45.5 5.3e-07 29.8 0.7 7.7 7 0 0 7 7 7 6 CARDB DUF4832 PF16116.5 gi|257388188|ref|YP_003177961.1| - 9.9e-06 25.6 4.9 2.6 7.8 0.0 6.2 7 0 0 7 7 7 2 Domain of unknown function (DUF4832) A2M PF00207.22 gi|257388188|ref|YP_003177961.1| - 1.7e-05 24.6 0.5 0.42 10.5 0.0 4.9 4 0 0 4 4 4 1 Alpha-2-macroglobulin family Fn3-like PF14310.6 gi|257388188|ref|YP_003177961.1| - 0.00015 21.8 5.4 0.39 10.9 0.0 5.2 5 0 0 5 5 5 2 Fibronectin type III-like domain Transglut_C PF00927.22 gi|257388188|ref|YP_003177961.1| - 0.015 15.4 0.7 36 4.6 0.0 4.5 5 0 0 5 5 5 0 Transglutaminase family, C-terminal ig like domain Glyco_hydro_2 PF00703.21 gi|257388188|ref|YP_003177961.1| - 0.1 13.3 0.1 0.1 13.3 0.1 6.1 7 3 0 7 7 7 0 Glycosyl hydrolases family 2 hGDE_N PF14699.6 gi|257388188|ref|YP_003177961.1| - 0.11 12.6 0.0 7.9 6.7 0.0 3.4 4 0 0 4 4 4 0 N-terminal domain from the human glycogen debranching enzyme DUF1573 PF07610.11 gi|257388188|ref|YP_003177961.1| - 0.24 11.4 5.8 2 8.5 0.3 4.4 4 1 0 4 4 4 0 Protein of unknown function (DUF1573) YtkA PF13115.6 gi|257388188|ref|YP_003177961.1| - 0.63 10.7 6.9 8.9 7.0 0.0 5.1 5 0 0 5 5 5 0 YtkA-like E1_DerP2_DerF2 PF02221.15 gi|257388188|ref|YP_003177961.1| - 0.88 10.0 6.5 0.9 10.0 0.2 4.2 5 0 0 5 5 5 0 ML domain Bim_N PF06773.11 gi|257388193|ref|YP_003177966.1| - 0.14 11.9 0.1 0.73 9.6 0.1 2.1 2 0 0 2 2 2 0 Bim protein N-terminus T2SSF PF00482.23 gi|257388194|ref|YP_003177967.1| - 1.3e-26 93.0 14.6 8.3e-15 54.8 1.2 3.2 3 0 0 3 3 3 2 Type II secretion system (T2SS), protein F DUF1461 PF07314.11 gi|257388194|ref|YP_003177967.1| - 0.041 13.8 0.2 0.041 13.8 0.2 2.3 3 0 0 3 3 3 0 Protein of unknown function (DUF1461) E1-E2_ATPase PF00122.20 gi|257388194|ref|YP_003177967.1| - 0.29 10.6 2.4 5.9 6.4 0.1 3.3 3 0 0 3 3 3 0 E1-E2 ATPase Ctr PF04145.15 gi|257388194|ref|YP_003177967.1| - 0.89 10.2 3.4 0.73 10.4 0.8 2.2 2 1 0 2 2 2 0 Ctr copper transporter family T2SSE PF00437.20 gi|257388195|ref|YP_003177968.1| - 6.2e-43 146.8 0.0 1.2e-42 145.9 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_29 PF13555.6 gi|257388195|ref|YP_003177968.1| - 0.0032 17.2 0.1 0.0077 15.9 0.1 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain Aminotran_1_2 PF00155.21 gi|257388196|ref|YP_003177969.1| - 1.5e-69 234.9 0.0 1.7e-69 234.7 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|257388196|ref|YP_003177969.1| - 5.4e-05 22.6 0.0 7.8e-05 22.1 0.0 1.2 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.19 gi|257388196|ref|YP_003177969.1| - 0.0031 16.5 0.0 0.0046 16.0 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V OKR_DC_1 PF01276.20 gi|257388196|ref|YP_003177969.1| - 0.034 12.9 0.0 0.16 10.7 0.0 1.9 1 1 0 1 1 1 0 Orn/Lys/Arg decarboxylase, major domain AsnC_trans_reg PF01037.21 gi|257388197|ref|YP_003177970.1| - 5.4e-14 51.9 0.1 1e-13 51.1 0.1 1.5 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_24 PF13412.6 gi|257388197|ref|YP_003177970.1| - 5.3e-12 45.1 0.3 5.5e-11 41.9 0.1 2.4 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|257388197|ref|YP_003177970.1| - 9.6e-08 31.7 1.0 3.1e-07 30.1 0.2 2.0 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_IclR PF09339.10 gi|257388197|ref|YP_003177970.1| - 3.9e-06 26.6 0.0 7.6e-06 25.6 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|257388197|ref|YP_003177970.1| - 1.2e-05 25.0 0.0 2.2e-05 24.2 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|257388197|ref|YP_003177970.1| - 0.00029 20.8 0.0 0.00059 19.8 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR PF01047.22 gi|257388197|ref|YP_003177970.1| - 0.001 18.9 0.0 0.0019 18.1 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_Tnp_ISL3 PF13542.6 gi|257388197|ref|YP_003177970.1| - 0.0013 18.1 0.0 0.0029 17.0 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of transposase family ISL3 HTH_20 PF12840.7 gi|257388197|ref|YP_003177970.1| - 0.004 17.2 0.0 0.064 13.3 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_29 PF13551.6 gi|257388197|ref|YP_003177970.1| - 0.013 15.5 0.0 0.025 14.6 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix Rrf2 PF02082.20 gi|257388197|ref|YP_003177970.1| - 0.019 15.3 0.0 0.065 13.6 0.0 1.9 3 0 0 3 3 3 0 Transcriptional regulator TFIIE_alpha PF02002.17 gi|257388197|ref|YP_003177970.1| - 0.02 14.8 0.0 0.034 14.0 0.0 1.3 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_36 PF13730.6 gi|257388197|ref|YP_003177970.1| - 0.021 14.8 0.0 0.055 13.4 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain TrmB PF01978.19 gi|257388197|ref|YP_003177970.1| - 0.031 14.1 0.1 0.056 13.3 0.1 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF501 PF04417.12 gi|257388197|ref|YP_003177970.1| - 0.035 13.9 0.0 0.053 13.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF501) RPA_C PF08784.11 gi|257388197|ref|YP_003177970.1| - 0.036 14.7 0.0 0.089 13.5 0.0 1.7 2 0 0 2 2 2 0 Replication protein A C terminal FtsX_ECD PF18075.1 gi|257388197|ref|YP_003177970.1| - 0.046 14.4 0.2 3 8.5 0.2 2.5 1 1 0 1 1 1 0 FtsX extracellular domain FtsK_gamma PF09397.10 gi|257388197|ref|YP_003177970.1| - 0.066 13.0 0.0 0.13 12.0 0.0 1.5 1 0 0 1 1 1 0 Ftsk gamma domain Dimerisation2 PF16864.5 gi|257388198|ref|YP_003177971.1| - 0.033 14.2 0.0 0.046 13.7 0.0 1.4 1 1 0 1 1 1 0 Dimerisation domain Redoxin PF08534.10 gi|257388199|ref|YP_003177972.1| - 8.7e-16 58.0 0.0 1.1e-15 57.7 0.0 1.1 1 0 0 1 1 1 1 Redoxin AhpC-TSA PF00578.21 gi|257388199|ref|YP_003177972.1| - 1.2e-14 54.3 0.0 1.6e-14 53.8 0.0 1.1 1 0 0 1 1 1 1 AhpC/TSA family Thioredoxin_2 PF13098.6 gi|257388199|ref|YP_003177972.1| - 0.0017 18.8 0.0 0.0028 18.1 0.0 1.4 1 0 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_3 PF13192.6 gi|257388199|ref|YP_003177972.1| - 0.043 13.9 0.0 10 6.2 0.0 2.3 1 1 1 2 2 2 0 Thioredoxin domain Thioredoxin_8 PF13905.6 gi|257388199|ref|YP_003177972.1| - 0.076 13.4 0.0 0.12 12.7 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin-like DUF2284 PF10050.9 gi|257388199|ref|YP_003177972.1| - 0.1 12.3 0.0 0.16 11.7 0.0 1.2 1 0 0 1 1 1 0 Predicted metal-binding protein (DUF2284) TraF PF13728.6 gi|257388199|ref|YP_003177972.1| - 0.12 12.1 0.0 0.23 11.2 0.0 1.6 1 1 0 1 1 1 0 F plasmid transfer operon protein T4_deiodinase PF00837.17 gi|257388199|ref|YP_003177972.1| - 0.23 10.7 0.0 0.32 10.2 0.0 1.2 1 0 0 1 1 1 0 Iodothyronine deiodinase BtpA PF03437.15 gi|257388200|ref|YP_003177973.1| - 1.9e-83 279.8 7.3 2.2e-83 279.6 7.3 1.0 1 0 0 1 1 1 1 BtpA family Trp_syntA PF00290.20 gi|257388200|ref|YP_003177973.1| - 0.0033 16.3 1.3 0.0063 15.4 1.3 1.5 1 0 0 1 1 1 1 Tryptophan synthase alpha chain Asparaginase_C PF17763.1 gi|257388200|ref|YP_003177973.1| - 0.0039 17.4 2.4 0.049 13.9 2.4 2.4 1 1 0 1 1 1 1 Glutaminase/Asparaginase C-terminal domain PcrB PF01884.17 gi|257388200|ref|YP_003177973.1| - 0.039 13.4 1.5 0.12 11.8 0.2 2.3 1 1 1 2 2 2 0 PcrB family DUF1445 PF07286.12 gi|257388200|ref|YP_003177973.1| - 0.073 13.0 2.2 0.63 10.0 0.4 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF1445) MS_channel PF00924.18 gi|257388201|ref|YP_003177974.1| - 2.1e-27 96.0 3.5 2e-26 92.8 3.5 2.2 1 1 0 1 1 1 1 Mechanosensitive ion channel Methyltransf_3 PF01596.17 gi|257388202|ref|YP_003177975.1| - 9.9e-22 77.2 0.0 1.3e-21 76.8 0.0 1.1 1 0 0 1 1 1 1 O-methyltransferase Methyltransf_24 PF13578.6 gi|257388202|ref|YP_003177975.1| - 1.9e-15 57.8 0.2 5e-15 56.4 0.2 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|257388202|ref|YP_003177975.1| - 1.5e-09 37.9 0.1 1.9e-09 37.5 0.1 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|257388202|ref|YP_003177975.1| - 6.3e-09 36.4 0.0 2.6e-08 34.5 0.0 2.0 2 0 0 2 2 2 1 Methyltransferase domain MTS PF05175.14 gi|257388202|ref|YP_003177975.1| - 2.5e-06 27.1 0.0 3.7e-06 26.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PCMT PF01135.19 gi|257388202|ref|YP_003177975.1| - 0.00014 21.7 0.0 0.00021 21.1 0.0 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_12 PF08242.12 gi|257388202|ref|YP_003177975.1| - 0.00025 21.7 0.0 0.0005 20.8 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|257388202|ref|YP_003177975.1| - 0.083 12.2 0.0 0.12 11.7 0.0 1.2 1 0 0 1 1 1 0 ubiE/COQ5 methyltransferase family Methyltransf_18 PF12847.7 gi|257388202|ref|YP_003177975.1| - 0.14 12.1 0.0 0.19 11.6 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain CheC PF04509.12 gi|257388203|ref|YP_003177976.1| - 1.1e-14 54.0 1.9 1.2e-14 53.9 0.5 1.8 2 0 0 2 2 2 1 CheC-like family CheX PF13690.6 gi|257388203|ref|YP_003177976.1| - 2.7e-05 24.3 1.9 4.1e-05 23.7 0.1 2.1 2 1 0 2 2 2 1 Chemotaxis phosphatase CheX FliM PF02154.15 gi|257388203|ref|YP_003177976.1| - 0.0033 17.3 0.1 0.0037 17.2 0.1 1.2 1 0 0 1 1 1 1 Flagellar motor switch protein FliM Acyl-CoA_dh_1 PF00441.24 gi|257388204|ref|YP_003177977.1| - 2e-42 145.0 2.9 2e-42 145.0 2.9 1.5 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|257388204|ref|YP_003177977.1| - 1.1e-26 92.9 0.1 3.9e-26 91.1 0.0 2.0 3 0 0 3 3 3 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_N PF02771.16 gi|257388204|ref|YP_003177977.1| - 6.6e-25 88.0 2.9 6.6e-25 88.0 2.9 2.2 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.11 gi|257388204|ref|YP_003177977.1| - 6.4e-20 71.8 4.1 1.1e-19 71.0 4.1 1.4 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain B12-binding_2 PF02607.17 gi|257388204|ref|YP_003177977.1| - 0.0032 17.9 0.4 0.0077 16.7 0.4 1.6 1 0 0 1 1 1 1 B12 binding domain DUF4625 PF15418.6 gi|257388205|ref|YP_003177978.1| - 0.059 13.6 0.0 1.1 9.5 0.0 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4625) DUF3530 PF12048.8 gi|257388205|ref|YP_003177978.1| - 3.9 6.8 7.4 3.7 6.9 5.7 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3530) DICT PF10069.9 gi|257388206|ref|YP_003177979.1| - 4.8e-15 55.5 0.0 7.9e-15 54.8 0.0 1.3 1 0 0 1 1 1 1 Sensory domain in DIguanylate Cyclases and Two-component system DUF4824 PF16106.5 gi|257388206|ref|YP_003177979.1| - 0.067 12.4 0.0 0.12 11.6 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4824) CHASE6_C PF17150.4 gi|257388206|ref|YP_003177979.1| - 0.17 12.6 0.1 0.43 11.3 0.1 1.6 1 0 0 1 1 1 0 C-terminal domain of two-partite extracellular sensor domain POR_N PF01855.19 gi|257388207|ref|YP_003177980.1| - 9.5e-49 166.2 0.5 2.7e-48 164.7 0.5 1.7 1 1 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.18 gi|257388207|ref|YP_003177980.1| - 1.1e-45 155.9 0.0 3.7e-45 154.2 0.0 1.9 2 0 0 2 2 2 1 Pyruvate ferredoxin/flavodoxin oxidoreductase PFOR_II PF17147.4 gi|257388207|ref|YP_003177980.1| - 2.7e-08 34.0 0.0 4.8e-08 33.2 0.0 1.4 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II TPP_enzyme_N PF02776.18 gi|257388207|ref|YP_003177980.1| - 0.0013 18.3 0.1 0.0027 17.3 0.1 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Rbsn PF11464.8 gi|257388207|ref|YP_003177980.1| - 0.09 12.5 1.7 1.7 8.4 0.1 2.9 3 0 0 3 3 3 0 Rabenosyn Rab binding domain TPP_enzyme_C PF02775.21 gi|257388208|ref|YP_003177981.1| - 5.8e-34 117.1 0.1 8.9e-34 116.5 0.1 1.2 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.8 gi|257388208|ref|YP_003177981.1| - 0.018 15.1 1.4 0.048 13.8 1.4 1.8 1 0 0 1 1 1 0 Pyruvate ferredoxin oxidoreductase beta subunit C terminal DUF2487 PF10673.9 gi|257388208|ref|YP_003177981.1| - 0.17 11.9 0.1 0.49 10.4 0.0 1.7 1 1 1 2 2 2 0 Protein of unknown function (DUF2487) HTH_24 PF13412.6 gi|257388209|ref|YP_003177982.1| - 3.3e-15 55.4 0.0 5.1e-15 54.8 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|257388209|ref|YP_003177982.1| - 2.4e-10 40.1 0.1 3.9e-10 39.4 0.1 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain AsnC_trans_reg PF01037.21 gi|257388209|ref|YP_003177982.1| - 2.3e-09 37.1 0.1 3.6e-09 36.4 0.1 1.3 1 0 0 1 1 1 1 Lrp/AsnC ligand binding domain HTH_20 PF12840.7 gi|257388209|ref|YP_003177982.1| - 1.5e-07 31.4 0.0 3.4e-07 30.2 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|257388209|ref|YP_003177982.1| - 3.8e-07 29.9 0.0 7.4e-07 29.0 0.0 1.5 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.7 gi|257388209|ref|YP_003177982.1| - 8.8e-07 28.7 0.0 6.1e-06 26.0 0.0 2.0 2 0 0 2 2 2 1 MarR family HTH_5 PF01022.20 gi|257388209|ref|YP_003177982.1| - 1.1e-06 28.4 0.0 1.9e-06 27.6 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Fe_dep_repress PF01325.19 gi|257388209|ref|YP_003177982.1| - 1.8e-06 28.0 0.0 3.8e-06 27.0 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_DeoR PF08220.12 gi|257388209|ref|YP_003177982.1| - 4.4e-06 26.3 0.0 8.6e-06 25.4 0.0 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_IclR PF09339.10 gi|257388209|ref|YP_003177982.1| - 9.1e-06 25.4 0.0 1.8e-05 24.5 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_36 PF13730.6 gi|257388209|ref|YP_003177982.1| - 2.1e-05 24.4 0.0 3.3e-05 23.7 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_23 PF13384.6 gi|257388209|ref|YP_003177982.1| - 5.2e-05 22.9 0.0 9.6e-05 22.1 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain MarR PF01047.22 gi|257388209|ref|YP_003177982.1| - 6.9e-05 22.7 0.0 0.00012 21.9 0.0 1.4 1 0 0 1 1 1 1 MarR family Rrf2 PF02082.20 gi|257388209|ref|YP_003177982.1| - 8.7e-05 22.8 0.0 0.00037 20.8 0.0 1.8 1 1 1 2 2 2 1 Transcriptional regulator TrmB PF01978.19 gi|257388209|ref|YP_003177982.1| - 0.00019 21.2 0.1 0.00035 20.4 0.1 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|257388209|ref|YP_003177982.1| - 0.001 19.0 0.0 0.0018 18.2 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain GntR PF00392.21 gi|257388209|ref|YP_003177982.1| - 0.0011 18.6 0.1 0.0033 17.0 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_29 PF13551.6 gi|257388209|ref|YP_003177982.1| - 0.0019 18.2 0.0 0.0029 17.6 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn helix HTH_28 PF13518.6 gi|257388209|ref|YP_003177982.1| - 0.003 17.6 0.0 0.0063 16.6 0.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|257388209|ref|YP_003177982.1| - 0.0032 17.1 0.0 0.0067 16.1 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 FaeA PF04703.12 gi|257388209|ref|YP_003177982.1| - 0.0046 17.3 0.0 0.0074 16.6 0.0 1.3 1 0 0 1 1 1 1 FaeA-like protein HTH_10 PF04967.12 gi|257388209|ref|YP_003177982.1| - 0.0093 15.8 0.0 0.019 14.8 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.16 gi|257388209|ref|YP_003177982.1| - 0.012 15.1 0.0 0.02 14.4 0.0 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 LacI PF00356.21 gi|257388209|ref|YP_003177982.1| - 0.015 15.1 0.0 0.041 13.7 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, lacI family HTH_45 PF14947.6 gi|257388209|ref|YP_003177982.1| - 0.026 14.5 0.0 0.044 13.8 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_47 PF16221.5 gi|257388209|ref|YP_003177982.1| - 0.04 13.5 0.0 0.086 12.4 0.0 1.6 1 0 0 1 1 1 0 winged helix-turn-helix HTH_3 PF01381.22 gi|257388209|ref|YP_003177982.1| - 0.056 13.5 0.0 0.095 12.8 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix TFIIE_alpha PF02002.17 gi|257388209|ref|YP_003177982.1| - 0.056 13.3 0.0 0.1 12.5 0.0 1.4 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_6 PF01418.17 gi|257388209|ref|YP_003177982.1| - 0.058 13.4 0.0 0.11 12.5 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family TetR_N PF00440.23 gi|257388209|ref|YP_003177982.1| - 0.061 13.1 0.1 0.12 12.2 0.1 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, tetR family HTH_Mga PF08280.11 gi|257388209|ref|YP_003177982.1| - 0.1 12.6 0.0 0.16 12.1 0.0 1.3 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain HU-CCDC81_euk_2 PF18289.1 gi|257388209|ref|YP_003177982.1| - 0.12 12.6 0.1 9.2 6.5 0.0 2.2 2 0 0 2 2 2 0 CCDC81 eukaryotic HU domain 2 RPA_C PF08784.11 gi|257388209|ref|YP_003177982.1| - 0.12 13.0 0.0 0.37 11.5 0.0 1.8 2 0 0 2 2 2 0 Replication protein A C terminal SLH PF00395.20 gi|257388209|ref|YP_003177982.1| - 0.13 12.3 0.0 0.32 11.0 0.0 1.8 1 0 0 1 1 1 0 S-layer homology domain Sigma70_r3 PF04539.16 gi|257388209|ref|YP_003177982.1| - 0.14 12.3 0.6 3.3 7.9 0.1 2.4 2 0 0 2 2 2 0 Sigma-70 region 3 TnsD PF15978.5 gi|257388209|ref|YP_003177982.1| - 0.15 11.0 0.1 0.18 10.8 0.1 1.1 1 0 0 1 1 1 0 Tn7-like transposition protein D UPF0122 PF04297.14 gi|257388209|ref|YP_003177982.1| - 0.17 12.2 0.1 0.27 11.5 0.1 1.3 1 0 0 1 1 1 0 Putative helix-turn-helix protein, YlxM / p13 like DHHA1 PF02272.19 gi|257388210|ref|YP_003177983.1| - 1.3e-13 51.5 0.3 5.2e-13 49.6 0.2 2.0 2 0 0 2 2 2 1 DHHA1 domain DHH PF01368.20 gi|257388210|ref|YP_003177983.1| - 9.3e-11 41.9 0.0 1.7e-10 41.0 0.0 1.5 1 0 0 1 1 1 1 DHH family TrkA_N PF02254.18 gi|257388210|ref|YP_003177983.1| - 9.4e-10 38.8 0.1 2.3e-09 37.5 0.1 1.7 1 0 0 1 1 1 1 TrkA-N domain DUF1455 PF07306.11 gi|257388210|ref|YP_003177983.1| - 0.14 12.2 0.0 0.27 11.2 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1455) CBS PF00571.28 gi|257388211|ref|YP_003177984.1| - 8.2e-24 83.8 1.6 2.5e-11 43.8 0.0 2.6 2 0 0 2 2 2 2 CBS domain ParBc PF02195.18 gi|257388211|ref|YP_003177984.1| - 7.3e-05 23.0 0.1 0.0022 18.3 0.1 2.7 1 1 0 1 1 1 1 ParB-like nuclease domain DUF1015 PF06245.11 gi|257388211|ref|YP_003177984.1| - 0.0081 15.1 0.0 0.012 14.5 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1015) ParBc_2 PF08857.11 gi|257388211|ref|YP_003177984.1| - 0.033 14.3 0.0 0.09 12.9 0.0 1.7 1 1 0 1 1 1 0 Putative ParB-like nuclease MM_CoA_mutase PF01642.22 gi|257388212|ref|YP_003177985.1| - 1.7e-210 700.0 1.3 1.9e-210 699.8 1.3 1.0 1 0 0 1 1 1 1 Methylmalonyl-CoA mutase DUF4013 PF13197.6 gi|257388213|ref|YP_003177986.1| - 0.013 15.4 21.4 0.013 15.4 21.4 3.1 2 1 1 3 3 3 0 Protein of unknown function (DUF4013) DUF975 PF06161.11 gi|257388213|ref|YP_003177986.1| - 0.34 10.7 21.9 0.012 15.4 10.4 2.0 1 1 0 2 2 2 0 Protein of unknown function (DUF975) Bac_export_2 PF01312.19 gi|257388213|ref|YP_003177986.1| - 1.5 7.9 12.7 0.94 8.6 2.8 2.1 1 1 1 2 2 2 0 FlhB HrpN YscU SpaS Family AMP-binding PF00501.28 gi|257388214|ref|YP_003177987.1| - 3.3e-79 266.5 0.0 4e-79 266.2 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|257388214|ref|YP_003177987.1| - 7e-18 65.4 1.3 1.4e-17 64.5 1.3 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|257388214|ref|YP_003177987.1| - 9.7e-15 54.2 1.0 2.8e-14 52.8 1.0 1.8 1 0 0 1 1 1 1 Acetyl-coenzyme A synthetase N-terminus DUF485 PF04341.12 gi|257388215|ref|YP_003177988.1| - 0.13 12.3 2.9 0.27 11.2 2.9 1.5 1 1 0 1 1 1 0 Protein of unknown function, DUF485 FeoB_C PF07664.12 gi|257388215|ref|YP_003177988.1| - 1.1 9.0 4.8 4.2 7.1 0.2 2.2 2 0 0 2 2 2 0 Ferrous iron transport protein B C terminus LapA_dom PF06305.11 gi|257388215|ref|YP_003177988.1| - 3.7 7.4 5.8 1.5 8.7 0.2 2.1 2 0 0 2 2 2 0 Lipopolysaccharide assembly protein A domain ATP1G1_PLM_MAT8 PF02038.16 gi|257388216|ref|YP_003177989.1| - 0.73 9.3 3.5 1 8.9 3.5 1.4 1 1 0 1 1 1 0 ATP1G1/PLM/MAT8 family COX1 PF00115.20 gi|257388217|ref|YP_003177990.1| - 3.5e-149 497.4 61.7 3.5e-149 497.4 61.7 1.6 2 0 0 2 2 2 1 Cytochrome C and Quinol oxidase polypeptide I Alph_Pro_TM PF09608.10 gi|257388217|ref|YP_003177990.1| - 9.6 5.9 6.2 2.9 7.7 0.4 2.2 2 0 0 2 2 2 0 Putative transmembrane protein (Alph_Pro_TM) TM_helix PF05552.12 gi|257388219|ref|YP_003177992.1| - 0.49 10.4 5.2 7.4 6.6 0.0 2.9 3 0 0 3 3 3 0 Conserved TM helix DUF4131 PF13567.6 gi|257388219|ref|YP_003177992.1| - 0.67 9.6 6.2 1.5 8.4 6.2 1.7 1 1 0 1 1 1 0 Domain of unknown function (DUF4131) TolA_bind_tri PF16331.5 gi|257388220|ref|YP_003177993.1| - 0.00011 22.2 10.5 0.00026 21.0 10.5 1.6 1 0 0 1 1 1 1 TolA binding protein trimerisation CENP-F_leu_zip PF10473.9 gi|257388220|ref|YP_003177993.1| - 0.00015 21.8 7.8 0.00026 21.0 7.8 1.3 1 0 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 APG6_N PF17675.1 gi|257388220|ref|YP_003177993.1| - 0.00023 21.7 13.6 0.00048 20.7 13.6 1.5 1 0 0 1 1 1 1 Apg6 coiled-coil region V-SNARE PF05008.15 gi|257388220|ref|YP_003177993.1| - 0.00036 20.8 6.8 0.00089 19.6 6.8 1.7 1 0 0 1 1 1 1 Vesicle transport v-SNARE protein N-terminus YabA PF06156.13 gi|257388220|ref|YP_003177993.1| - 0.0026 18.3 4.2 0.072 13.7 4.7 2.3 2 0 0 2 2 2 1 Initiation control protein YabA Tmemb_cc2 PF10267.9 gi|257388220|ref|YP_003177993.1| - 0.0031 16.7 5.3 0.0031 16.7 5.3 1.6 2 0 0 2 2 1 1 Predicted transmembrane and coiled-coil 2 protein THOC7 PF05615.13 gi|257388220|ref|YP_003177993.1| - 0.0032 17.7 5.9 0.0081 16.4 5.9 1.6 1 0 0 1 1 1 1 Tho complex subunit 7 Taxilin PF09728.9 gi|257388220|ref|YP_003177993.1| - 0.0059 15.8 2.2 0.0091 15.2 2.2 1.2 1 0 0 1 1 1 1 Myosin-like coiled-coil protein Spc7 PF08317.11 gi|257388220|ref|YP_003177993.1| - 0.011 14.6 6.4 0.018 14.0 6.4 1.2 1 0 0 1 1 1 0 Spc7 kinetochore protein bZIP_1 PF00170.21 gi|257388220|ref|YP_003177993.1| - 0.012 15.7 7.8 0.48 10.6 4.6 2.4 2 0 0 2 2 2 0 bZIP transcription factor Fez1 PF06818.15 gi|257388220|ref|YP_003177993.1| - 0.013 16.0 4.9 0.033 14.6 4.9 1.7 1 0 0 1 1 1 0 Fez1 MscS_porin PF12795.7 gi|257388220|ref|YP_003177993.1| - 0.013 15.0 19.7 0.027 14.0 19.7 1.4 1 0 0 1 1 1 0 Mechanosensitive ion channel porin domain Atg14 PF10186.9 gi|257388220|ref|YP_003177993.1| - 0.015 14.4 2.9 0.023 13.8 2.9 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 Cluap1 PF10234.9 gi|257388220|ref|YP_003177993.1| - 0.016 14.7 8.1 0.026 13.9 8.1 1.2 1 0 0 1 1 1 0 Clusterin-associated protein-1 TMF_TATA_bd PF12325.8 gi|257388220|ref|YP_003177993.1| - 0.016 15.4 9.8 0.039 14.2 9.8 1.6 1 0 0 1 1 1 0 TATA element modulatory factor 1 TATA binding DUF812 PF05667.11 gi|257388220|ref|YP_003177993.1| - 0.018 13.9 6.2 0.027 13.4 6.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF812) DUF3450 PF11932.8 gi|257388220|ref|YP_003177993.1| - 0.042 13.2 8.3 0.07 12.4 8.3 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) JIP_LZII PF16471.5 gi|257388220|ref|YP_003177993.1| - 0.043 14.0 9.3 0.13 12.4 9.2 1.9 2 0 0 2 2 1 0 JNK-interacting protein leucine zipper II DUF1664 PF07889.12 gi|257388220|ref|YP_003177993.1| - 0.056 13.5 3.0 0.096 12.7 3.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) GAS PF13851.6 gi|257388220|ref|YP_003177993.1| - 0.056 12.8 6.5 0.096 12.0 6.5 1.3 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding Jnk-SapK_ap_N PF09744.9 gi|257388220|ref|YP_003177993.1| - 0.062 13.5 10.2 0.12 12.6 10.2 1.4 1 0 0 1 1 1 0 JNK_SAPK-associated protein-1 PKcGMP_CC PF16808.5 gi|257388220|ref|YP_003177993.1| - 0.072 13.0 2.1 0.2 11.5 2.1 1.7 1 0 0 1 1 1 0 Coiled-coil N-terminus of cGMP-dependent protein kinase DUF4200 PF13863.6 gi|257388220|ref|YP_003177993.1| - 0.072 13.5 6.2 0.14 12.6 6.2 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4200) BRE1 PF08647.11 gi|257388220|ref|YP_003177993.1| - 0.082 13.0 5.9 0.048 13.7 3.8 1.6 1 1 0 1 1 1 0 BRE1 E3 ubiquitin ligase Cep57_CLD_2 PF14197.6 gi|257388220|ref|YP_003177993.1| - 0.088 12.9 13.2 0.18 11.9 13.2 1.4 1 0 0 1 1 1 0 Centrosome localisation domain of PPC89 Golgin_A5 PF09787.9 gi|257388220|ref|YP_003177993.1| - 0.091 12.2 7.1 0.16 11.4 7.1 1.3 1 0 0 1 1 1 0 Golgin subfamily A member 5 Laminin_II PF06009.12 gi|257388220|ref|YP_003177993.1| - 0.1 12.6 1.5 0.2 11.7 1.5 1.3 1 0 0 1 1 1 0 Laminin Domain II Fmp27_WPPW PF10359.9 gi|257388220|ref|YP_003177993.1| - 0.12 11.2 2.5 0.2 10.5 2.5 1.2 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain Suppressor_APC PF11414.8 gi|257388220|ref|YP_003177993.1| - 0.13 12.3 4.6 0.33 11.1 4.6 1.6 1 0 0 1 1 1 0 Adenomatous polyposis coli tumour suppressor protein AAA_23 PF13476.6 gi|257388220|ref|YP_003177993.1| - 0.17 12.3 6.6 0.32 11.5 6.6 1.4 1 0 0 1 1 1 0 AAA domain DUF641 PF04859.12 gi|257388220|ref|YP_003177993.1| - 0.18 12.1 4.6 0.37 11.1 4.6 1.4 1 0 0 1 1 1 0 Plant protein of unknown function (DUF641) HAUS-augmin3 PF14932.6 gi|257388220|ref|YP_003177993.1| - 0.2 11.2 7.6 0.31 10.6 7.6 1.2 1 0 0 1 1 1 0 HAUS augmin-like complex subunit 3 FlaC_arch PF05377.11 gi|257388220|ref|YP_003177993.1| - 0.2 12.1 6.8 1.7 9.1 6.8 2.2 1 1 0 1 1 1 0 Flagella accessory protein C (FlaC) Seryl_tRNA_N PF02403.22 gi|257388220|ref|YP_003177993.1| - 0.27 11.5 5.6 0.62 10.3 5.6 1.5 1 0 0 1 1 1 0 Seryl-tRNA synthetase N-terminal domain ABC_tran_CTD PF16326.5 gi|257388220|ref|YP_003177993.1| - 0.34 11.2 15.4 1 9.7 15.4 1.9 1 0 0 1 1 1 0 ABC transporter C-terminal domain SOGA PF11365.8 gi|257388220|ref|YP_003177993.1| - 0.35 12.0 6.4 1.5 10.0 6.4 2.0 1 1 0 1 1 1 0 Protein SOGA DUF4349 PF14257.6 gi|257388220|ref|YP_003177993.1| - 0.39 10.1 11.2 0.77 9.2 11.2 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4349) FapA PF03961.13 gi|257388220|ref|YP_003177993.1| - 0.41 9.2 2.1 0.62 8.6 2.1 1.2 1 0 0 1 1 1 0 Flagellar Assembly Protein A DUF724 PF05266.14 gi|257388220|ref|YP_003177993.1| - 0.43 10.4 3.5 0.75 9.6 3.5 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF724) DivIC PF04977.15 gi|257388220|ref|YP_003177993.1| - 0.45 10.3 14.8 0.32 10.8 4.3 2.3 1 1 1 2 2 2 0 Septum formation initiator BLOC1_2 PF10046.9 gi|257388220|ref|YP_003177993.1| - 0.48 10.7 4.1 1.1 9.6 4.1 1.5 1 0 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Phage_GP20 PF06810.11 gi|257388220|ref|YP_003177993.1| - 0.5 10.2 5.0 1.3 8.8 5.0 1.7 1 1 0 1 1 1 0 Phage minor structural protein GP20 UPF0242 PF06785.11 gi|257388220|ref|YP_003177993.1| - 0.62 10.2 11.0 1.1 9.3 11.0 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus TSNAXIP1_N PF15739.5 gi|257388220|ref|YP_003177993.1| - 0.68 10.3 6.0 1.4 9.3 6.0 1.5 1 0 0 1 1 1 0 Translin-associated factor X-interacting N-terminus DUF4164 PF13747.6 gi|257388220|ref|YP_003177993.1| - 0.79 10.0 12.8 2.2 8.6 12.8 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF4164) DUF5082 PF16888.5 gi|257388220|ref|YP_003177993.1| - 0.83 9.9 5.0 0.35 11.1 1.6 1.9 1 1 0 1 1 1 0 Domain of unknown function (DUF5082) HemX PF04375.14 gi|257388220|ref|YP_003177993.1| - 0.85 8.8 9.0 1.4 8.2 9.0 1.3 1 0 0 1 1 1 0 HemX, putative uroporphyrinogen-III C-methyltransferase Cob_adeno_trans PF01923.18 gi|257388220|ref|YP_003177993.1| - 0.88 9.7 3.5 2.1 8.5 3.5 1.6 1 0 0 1 1 1 0 Cobalamin adenosyltransferase OmpH PF03938.14 gi|257388220|ref|YP_003177993.1| - 0.96 9.8 9.2 1.9 8.8 7.0 2.1 2 0 0 2 2 2 0 Outer membrane protein (OmpH-like) V_ATPase_I PF01496.19 gi|257388220|ref|YP_003177993.1| - 1 7.2 2.1 1.7 6.5 2.1 1.3 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family AAA_13 PF13166.6 gi|257388220|ref|YP_003177993.1| - 1.1 7.8 4.1 2.1 6.9 4.1 1.3 1 0 0 1 1 1 0 AAA domain TMPIT PF07851.13 gi|257388220|ref|YP_003177993.1| - 1.5 8.0 3.9 2.2 7.5 3.9 1.1 1 0 0 1 1 1 0 TMPIT-like protein Cnn_1N PF07989.11 gi|257388220|ref|YP_003177993.1| - 1.7 8.8 8.2 3.7 7.8 8.2 1.5 1 0 0 1 1 1 0 Centrosomin N-terminal motif 1 GrpE PF01025.19 gi|257388220|ref|YP_003177993.1| - 2.1 8.0 8.1 4.3 7.0 8.1 1.4 1 0 0 1 1 1 0 GrpE HIP1_clath_bdg PF16515.5 gi|257388220|ref|YP_003177993.1| - 2.1 9.0 12.8 0.58 10.8 4.8 2.1 1 1 1 2 2 2 0 Clathrin-binding domain of Huntingtin-interacting protein 1 TEX13 PF15186.6 gi|257388220|ref|YP_003177993.1| - 2.3 7.9 6.1 3.9 7.1 6.1 1.3 1 0 0 1 1 1 0 Testis-expressed sequence 13 protein family T3SSipB PF16535.5 gi|257388220|ref|YP_003177993.1| - 2.7 8.5 9.9 0.64 10.5 5.9 2.0 1 1 1 2 2 1 0 Type III cell invasion protein SipB Nsp1_C PF05064.13 gi|257388220|ref|YP_003177993.1| - 2.7 7.8 8.5 6.2 6.7 8.5 1.6 1 0 0 1 1 1 0 Nsp1-like C-terminal region CENP-H PF05837.12 gi|257388220|ref|YP_003177993.1| - 2.9 8.3 7.4 6.3 7.2 7.4 1.5 1 0 0 1 1 1 0 Centromere protein H (CENP-H) DUF2730 PF10805.8 gi|257388220|ref|YP_003177993.1| - 4.8 7.3 4.7 8.6 6.5 4.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2730) Prefoldin PF02996.17 gi|257388220|ref|YP_003177993.1| - 5.6 6.9 8.0 3.5 7.6 3.0 2.1 1 1 0 1 1 1 0 Prefoldin subunit Spc24 PF08286.11 gi|257388220|ref|YP_003177993.1| - 7.9 6.8 13.3 26 5.1 3.4 2.4 1 1 1 2 2 2 0 Spc24 subunit of Ndc80 PRKG1_interact PF15898.5 gi|257388220|ref|YP_003177993.1| - 8.9 7.3 14.5 0.38 11.7 8.1 2.1 2 0 0 2 2 1 0 cGMP-dependent protein kinase interacting domain HTH_12 PF08461.10 gi|257388221|ref|YP_003177994.1| - 0.0055 16.6 0.0 0.0099 15.8 0.0 1.6 1 1 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_24 PF13412.6 gi|257388221|ref|YP_003177994.1| - 0.0077 15.8 0.0 0.012 15.1 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|257388221|ref|YP_003177994.1| - 0.032 14.1 0.5 0.074 12.9 0.2 1.8 2 1 0 2 2 2 0 Bacterial regulatory protein, arsR family Phage_rep_org_N PF09681.10 gi|257388221|ref|YP_003177994.1| - 0.034 14.1 0.1 0.04 13.9 0.1 1.2 1 0 0 1 1 1 0 N-terminal phage replisome organiser (Phage_rep_org_N) DUF977 PF06163.11 gi|257388221|ref|YP_003177994.1| - 0.055 13.4 0.0 0.063 13.2 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF977) TrmB PF01978.19 gi|257388221|ref|YP_003177994.1| - 0.074 12.9 0.1 0.18 11.7 0.0 1.6 1 1 1 2 2 2 0 Sugar-specific transcriptional regulator TrmB PhosphMutase PF10143.9 gi|257388221|ref|YP_003177994.1| - 0.095 12.6 0.0 0.1 12.5 0.0 1.2 1 0 0 1 1 1 0 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Ribosomal_S19e PF01090.19 gi|257388221|ref|YP_003177994.1| - 0.095 12.4 0.0 0.66 9.7 0.0 1.9 1 1 1 2 2 2 0 Ribosomal protein S19e HTH_IclR PF09339.10 gi|257388221|ref|YP_003177994.1| - 0.11 12.3 0.0 0.16 11.8 0.0 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain Adenylsucc_synt PF00709.21 gi|257388222|ref|YP_003177995.1| - 8.6e-152 505.9 0.0 9.9e-152 505.7 0.0 1.0 1 0 0 1 1 1 1 Adenylosuccinate synthetase Trm112p PF03966.16 gi|257388223|ref|YP_003177996.1| - 3.1e-09 37.3 1.4 7.5e-09 36.0 1.4 1.6 1 1 0 1 1 1 1 Trm112p-like protein zf-C2HE PF16278.5 gi|257388223|ref|YP_003177996.1| - 0.13 12.7 0.2 0.17 12.3 0.2 1.2 1 0 0 1 1 1 0 C2HE / C2H2 / C2HC zinc-binding finger FA_desaturase PF00487.24 gi|257388224|ref|YP_003177997.1| - 0.048 13.5 0.0 0.048 13.5 0.0 1.2 1 0 0 1 1 1 0 Fatty acid desaturase DUF3119 PF11317.8 gi|257388224|ref|YP_003177997.1| - 0.65 10.3 2.4 1 9.6 2.4 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3119) DR2241 PF18069.1 gi|257388225|ref|YP_003177998.1| - 1.6e-44 150.3 10.2 1.1e-43 147.6 2.2 3.1 3 0 0 3 3 3 2 DR2241 stabilising domain Fer4_23 PF18009.1 gi|257388225|ref|YP_003177998.1| - 1.2e-28 99.3 0.8 8.4e-28 96.6 0.5 2.2 2 0 0 2 2 2 1 4Fe-4S iron-sulfur cluster binding domain CbiX PF01903.17 gi|257388226|ref|YP_003177999.1| - 7.9e-40 135.5 0.1 2.8e-20 72.6 0.0 2.1 2 0 0 2 2 2 2 CbiX CbiK PF06180.11 gi|257388226|ref|YP_003177999.1| - 6.8e-07 28.9 0.1 0.0005 19.5 0.1 2.1 1 1 0 2 2 2 2 Cobalt chelatase (CbiK) tRNA-synt_1e PF01406.19 gi|257388228|ref|YP_003178001.1| - 1.6e-106 356.0 0.2 4.8e-105 351.2 0.2 2.2 1 1 0 1 1 1 1 tRNA synthetases class I (C) catalytic domain DALR_2 PF09190.11 gi|257388228|ref|YP_003178001.1| - 5.8e-13 49.1 0.1 1.6e-12 47.7 0.0 1.7 2 0 0 2 2 2 1 DALR domain tRNA-synt_1g PF09334.11 gi|257388228|ref|YP_003178001.1| - 1.8e-11 43.4 0.3 2.3e-05 23.4 0.1 2.1 2 0 0 2 2 2 2 tRNA synthetases class I (M) tRNA-synt_1f PF01921.18 gi|257388228|ref|YP_003178001.1| - 8.3e-07 28.2 0.0 0.0018 17.3 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (K) tRNA-synt_1 PF00133.22 gi|257388228|ref|YP_003178001.1| - 4.8e-06 25.1 0.0 8.9e-06 24.2 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetases class I (I, L, M and V) tRNA-synt_1c PF00749.21 gi|257388228|ref|YP_003178001.1| - 0.002 17.1 0.0 0.0038 16.2 0.0 1.4 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain UVR PF02151.19 gi|257388228|ref|YP_003178001.1| - 0.014 15.1 0.2 0.076 12.8 0.0 2.3 2 0 0 2 2 2 0 UvrB/uvrC motif GHMP_kinases_C PF08544.13 gi|257388228|ref|YP_003178001.1| - 0.38 11.1 1.6 19 5.7 1.2 2.7 2 1 0 2 2 2 0 GHMP kinases C terminal CorA PF01544.18 gi|257388229|ref|YP_003178002.1| - 1.7e-69 234.4 0.0 1.9e-69 234.2 0.0 1.0 1 0 0 1 1 1 1 CorA-like Mg2+ transporter protein TctA PF01970.16 gi|257388230|ref|YP_003178003.1| - 4.7e-53 180.4 45.5 5.5e-53 180.2 45.5 1.0 1 0 0 1 1 1 1 Tripartite tricarboxylate transporter TctA family Ribosomal_60s PF00428.19 gi|257388231|ref|YP_003178004.1| - 4.6e-13 49.6 34.3 1.3e-12 48.2 34.3 1.6 1 1 0 1 1 1 1 60s Acidic ribosomal protein RRN3 PF05327.11 gi|257388231|ref|YP_003178004.1| - 0.028 13.0 2.4 0.032 12.8 2.4 1.0 1 0 0 1 1 1 0 RNA polymerase I specific transcription initiation factor RRN3 Sigma70_ner PF04546.13 gi|257388231|ref|YP_003178004.1| - 4.4 7.1 10.0 5.8 6.7 10.0 1.2 1 0 0 1 1 1 0 Sigma-70, non-essential region RNA_pol_3_Rpc31 PF11705.8 gi|257388231|ref|YP_003178004.1| - 7.5 6.7 12.9 8.3 6.6 12.9 1.1 1 0 0 1 1 1 0 DNA-directed RNA polymerase III subunit Rpc31 NOA36 PF06524.12 gi|257388231|ref|YP_003178004.1| - 9.1 5.5 9.0 11 5.3 9.0 1.1 1 0 0 1 1 1 0 NOA36 protein Ribosomal_L10 PF00466.20 gi|257388232|ref|YP_003178005.1| - 1.7e-21 76.2 0.0 3.5e-21 75.2 0.0 1.5 1 0 0 1 1 1 1 Ribosomal protein L10 RL10P_insert PF17777.1 gi|257388232|ref|YP_003178005.1| - 3.9e-13 49.2 0.0 6.2e-13 48.5 0.0 1.3 1 0 0 1 1 1 1 Insertion domain in 60S ribosomal protein L10P Cwf_Cwc_15 PF04889.12 gi|257388232|ref|YP_003178005.1| - 0.06 13.1 13.1 0.079 12.7 13.1 1.2 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein BUD22 PF09073.10 gi|257388232|ref|YP_003178005.1| - 0.15 11.4 9.3 0.19 11.0 9.3 1.1 1 0 0 1 1 1 0 BUD22 RNA_pol_3_Rpc31 PF11705.8 gi|257388232|ref|YP_003178005.1| - 2.1 8.5 15.4 3.5 7.8 15.4 1.4 1 0 0 1 1 1 0 DNA-directed RNA polymerase III subunit Rpc31 PPP4R2 PF09184.11 gi|257388232|ref|YP_003178005.1| - 2.2 7.8 9.7 3 7.4 9.7 1.2 1 0 0 1 1 1 0 PPP4R2 DHHW PF14286.6 gi|257388232|ref|YP_003178005.1| - 4.8 6.4 5.7 6.9 5.9 5.7 1.2 1 0 0 1 1 1 0 DHHW protein Ribosomal_L1 PF00687.21 gi|257388233|ref|YP_003178006.1| - 6.4e-41 140.3 0.0 7.7e-41 140.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L1p/L10e family Ribosomal_L11 PF00298.19 gi|257388234|ref|YP_003178007.1| - 8.6e-19 67.8 0.0 1.4e-18 67.2 0.0 1.3 1 0 0 1 1 1 1 Ribosomal protein L11, RNA binding domain Ribosomal_L11_N PF03946.14 gi|257388234|ref|YP_003178007.1| - 4.4e-18 64.9 0.1 8.6e-18 63.9 0.1 1.5 1 0 0 1 1 1 1 Ribosomal protein L11, N-terminal domain FbpA PF05833.11 gi|257388236|ref|YP_003178009.1| - 5.6e-87 292.4 0.3 7.3e-87 292.0 0.3 1.1 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) NFACT-R_1 PF05670.13 gi|257388236|ref|YP_003178009.1| - 1.3e-22 80.5 0.0 2.3e-22 79.7 0.0 1.4 1 0 0 1 1 1 1 NFACT protein RNA binding domain NFACT-R_2 PF18297.1 gi|257388236|ref|YP_003178009.1| - 5.1e-05 23.4 0.0 0.0003 20.9 0.0 2.2 2 0 0 2 2 2 1 NFACT protein RNA binding domain FliJ PF02050.16 gi|257388236|ref|YP_003178009.1| - 0.022 15.0 7.1 1 9.6 0.4 2.4 2 0 0 2 2 2 0 Flagellar FliJ protein DHR10 PF18595.1 gi|257388236|ref|YP_003178009.1| - 0.55 10.3 10.8 0.73 9.9 1.0 2.5 2 0 0 2 2 2 0 Designed helical repeat protein 10 domain CENP-Q PF13094.6 gi|257388236|ref|YP_003178009.1| - 2.8 8.1 10.1 3.3 7.9 1.1 2.8 3 0 0 3 3 3 0 CENP-Q, a CENPA-CAD centromere complex subunit Amino_oxidase PF01593.24 gi|257388237|ref|YP_003178010.1| - 1e-21 77.8 4.4 1.1e-11 44.7 1.0 2.0 1 1 1 2 2 2 2 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|257388237|ref|YP_003178010.1| - 1.3e-17 63.7 0.7 2.9e-17 62.7 0.7 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|257388237|ref|YP_003178010.1| - 4.6e-11 42.9 7.2 2.6e-07 30.5 1.2 2.3 1 1 0 2 2 2 2 FAD dependent oxidoreductase NAD_binding_9 PF13454.6 gi|257388237|ref|YP_003178010.1| - 1.8e-07 31.3 0.8 1.2e-06 28.6 0.3 2.4 2 1 0 2 2 2 1 FAD-NAD(P)-binding Pyr_redox_2 PF07992.14 gi|257388237|ref|YP_003178010.1| - 1.1e-06 28.1 1.7 4.6e-06 26.1 0.2 2.2 2 1 1 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|257388237|ref|YP_003178010.1| - 1e-05 24.8 2.6 1.1e-05 24.7 1.1 1.8 2 0 0 2 2 2 1 FAD binding domain Pyr_redox PF00070.27 gi|257388237|ref|YP_003178010.1| - 0.00019 21.9 0.5 0.0032 18.0 0.3 2.3 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|257388237|ref|YP_003178010.1| - 0.0012 17.7 1.0 0.0023 16.7 1.0 1.4 1 0 0 1 1 1 1 HI0933-like protein FAD_binding_3 PF01494.19 gi|257388237|ref|YP_003178010.1| - 0.003 16.9 0.5 0.035 13.4 0.2 2.2 2 0 0 2 2 2 1 FAD binding domain FAD_oxidored PF12831.7 gi|257388237|ref|YP_003178010.1| - 0.0034 16.8 0.6 0.0048 16.3 0.6 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_3 PF13738.6 gi|257388237|ref|YP_003178010.1| - 0.0036 16.6 0.2 0.085 12.1 0.4 2.0 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|257388237|ref|YP_003178010.1| - 0.0048 16.0 1.1 0.015 14.4 0.8 1.9 2 0 0 2 2 2 1 Glucose inhibited division protein A IlvN PF07991.12 gi|257388237|ref|YP_003178010.1| - 0.018 14.6 0.0 0.028 14.0 0.0 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain Thi4 PF01946.17 gi|257388237|ref|YP_003178010.1| - 0.021 14.1 0.3 0.031 13.5 0.3 1.2 1 0 0 1 1 1 0 Thi4 family ApbA PF02558.16 gi|257388237|ref|YP_003178010.1| - 0.025 14.2 0.0 0.11 12.2 0.1 2.1 2 0 0 2 2 2 0 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.18 gi|257388237|ref|YP_003178010.1| - 0.073 12.9 0.1 0.11 12.4 0.1 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|257388237|ref|YP_003178010.1| - 0.082 13.4 0.2 0.17 12.4 0.2 1.6 1 1 0 1 1 1 0 Putative NAD(P)-binding AlaDh_PNT_C PF01262.21 gi|257388237|ref|YP_003178010.1| - 0.089 12.1 0.4 0.15 11.3 0.4 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Lactamase_B PF00753.27 gi|257388238|ref|YP_003178011.1| - 2.5e-22 79.8 2.4 3.1e-22 79.5 2.4 1.1 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|257388238|ref|YP_003178011.1| - 0.00062 19.3 0.0 0.00088 18.8 0.0 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|257388238|ref|YP_003178011.1| - 0.12 11.8 0.0 0.19 11.1 0.0 1.3 1 0 0 1 1 1 0 Metallo-beta-lactamase superfamily domain Radical_SAM_C PF16199.5 gi|257388239|ref|YP_003178012.1| - 3.7e-25 87.8 0.0 6.5e-25 87.0 0.0 1.4 1 0 0 1 1 1 1 Radical_SAM C-terminal domain Radical_SAM PF04055.21 gi|257388239|ref|YP_003178012.1| - 5.5e-25 88.7 0.0 4.2e-24 85.8 0.0 2.3 2 0 0 2 2 2 1 Radical SAM superfamily Acetyltransf_1 PF00583.25 gi|257388239|ref|YP_003178012.1| - 1.4e-06 28.5 0.0 3.1e-06 27.4 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|257388239|ref|YP_003178012.1| - 0.012 15.5 0.1 0.037 14.0 0.1 1.7 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain Cupin_2 PF07883.11 gi|257388240|ref|YP_003178013.1| - 3.5e-13 49.1 0.1 5.9e-13 48.3 0.1 1.4 1 0 0 1 1 1 1 Cupin domain Cupin_3 PF05899.12 gi|257388240|ref|YP_003178013.1| - 3e-05 23.6 0.0 5.8e-05 22.7 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF861) Cupin_6 PF12852.7 gi|257388240|ref|YP_003178013.1| - 0.0018 18.1 0.0 0.0019 17.9 0.0 1.2 1 0 0 1 1 1 1 Cupin Cupin_1 PF00190.22 gi|257388240|ref|YP_003178013.1| - 0.075 12.6 0.0 0.1 12.2 0.0 1.2 1 0 0 1 1 1 0 Cupin Auxin_BP PF02041.16 gi|257388240|ref|YP_003178013.1| - 0.23 11.1 0.0 0.32 10.7 0.0 1.1 1 0 0 1 1 1 0 Auxin binding protein Exosortase_EpsH PF09721.10 gi|257388241|ref|YP_003178014.1| - 0.01 15.4 4.0 0.014 14.9 4.0 1.1 1 0 0 1 1 1 0 Transmembrane exosortase (Exosortase_EpsH) DUF3464 PF11947.8 gi|257388241|ref|YP_003178014.1| - 0.22 11.2 1.6 0.28 10.9 1.6 1.1 1 0 0 1 1 1 0 Photosynthesis affected mutant 68 DUF202 PF02656.15 gi|257388241|ref|YP_003178014.1| - 8.7 6.9 9.4 95 3.6 9.4 2.2 1 1 0 1 1 1 0 Domain of unknown function (DUF202) tRNA_anti-codon PF01336.25 gi|257388242|ref|YP_003178015.1| - 2.6e-10 40.2 0.9 5.8e-10 39.0 0.3 1.9 2 0 0 2 2 2 1 OB-fold nucleic acid binding domain S1 PF00575.23 gi|257388242|ref|YP_003178015.1| - 1.1e-07 32.1 0.0 3.5e-07 30.5 0.0 1.9 1 0 0 1 1 1 1 S1 RNA binding domain PTPS PF01242.19 gi|257388242|ref|YP_003178015.1| - 0.0051 16.8 0.2 0.76 9.8 0.0 2.8 3 0 0 3 3 3 1 6-pyruvoyl tetrahydropterin synthase tRNA_anti_2 PF13742.6 gi|257388242|ref|YP_003178015.1| - 0.011 15.9 0.0 0.028 14.6 0.0 1.7 1 0 0 1 1 1 0 OB-fold nucleic acid binding domain Yip1 PF04893.17 gi|257388244|ref|YP_003178017.1| - 1.6e-09 37.8 10.3 2.5e-09 37.1 10.3 1.3 1 1 0 1 1 1 1 Yip1 domain FMN_red PF03358.15 gi|257388246|ref|YP_003178019.1| - 5.3e-32 110.7 0.0 6.4e-32 110.4 0.0 1.1 1 0 0 1 1 1 1 NADPH-dependent FMN reductase Flavodoxin_2 PF02525.17 gi|257388246|ref|YP_003178019.1| - 3.7e-08 33.3 0.0 5e-08 32.9 0.0 1.2 1 0 0 1 1 1 1 Flavodoxin-like fold Flavodoxin_5 PF12724.7 gi|257388246|ref|YP_003178019.1| - 0.18 12.1 0.0 0.43 10.8 0.0 1.7 1 1 0 1 1 1 0 Flavodoxin domain HhH-GPD PF00730.25 gi|257388248|ref|YP_003178021.1| - 5.3e-15 55.8 0.0 8.1e-15 55.2 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|257388248|ref|YP_003178021.1| - 5.7e-08 32.2 0.0 1.4e-07 31.0 0.0 1.6 1 0 0 1 1 1 1 Helix-hairpin-helix motif DUF4846 PF16138.5 gi|257388249|ref|YP_003178022.1| - 0.1 12.1 0.0 0.12 11.9 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (4846) TrmB PF01978.19 gi|257388250|ref|YP_003178023.1| - 1.2e-18 66.7 0.3 2.3e-18 65.8 0.3 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB E2F_TDP PF02319.20 gi|257388250|ref|YP_003178023.1| - 0.015 15.3 0.0 0.046 13.8 0.0 1.8 2 0 0 2 2 2 0 E2F/DP family winged-helix DNA-binding domain HTH_IclR PF09339.10 gi|257388250|ref|YP_003178023.1| - 0.039 13.8 0.2 0.093 12.5 0.2 1.7 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_9 PF08221.11 gi|257388250|ref|YP_003178023.1| - 0.1 12.7 0.0 0.32 11.1 0.0 1.8 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_20 PF12840.7 gi|257388251|ref|YP_003178024.1| - 1.5e-14 53.8 0.1 2.6e-14 53.0 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|257388251|ref|YP_003178024.1| - 1.2e-05 25.1 0.0 3.2e-05 23.7 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|257388251|ref|YP_003178024.1| - 0.00042 19.8 0.0 0.00075 19.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|257388251|ref|YP_003178024.1| - 0.0026 17.7 0.0 0.0065 16.4 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|257388251|ref|YP_003178024.1| - 0.012 16.1 0.0 0.026 15.0 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_5 PF01022.20 gi|257388251|ref|YP_003178024.1| - 0.018 14.9 0.0 0.036 14.0 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_Crp_2 PF13545.6 gi|257388251|ref|YP_003178024.1| - 0.15 12.1 0.0 0.36 10.8 0.0 1.7 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain DUF2513 PF10711.9 gi|257388251|ref|YP_003178024.1| - 0.17 12.2 0.0 0.3 11.4 0.0 1.3 1 0 0 1 1 1 0 Hypothetical protein (DUF2513) Multi_Drug_Res PF00893.19 gi|257388252|ref|YP_003178025.1| - 4.5e-26 91.3 1.3 5.7e-26 91.0 1.3 1.1 1 0 0 1 1 1 1 Small Multidrug Resistance protein EamA PF00892.20 gi|257388252|ref|YP_003178025.1| - 0.006 16.8 5.3 0.0067 16.6 5.3 1.2 1 0 0 1 1 1 1 EamA-like transporter family DAO PF01266.24 gi|257388253|ref|YP_003178026.1| - 9.6e-10 38.6 4.2 0.00025 20.7 0.4 2.3 1 1 1 2 2 2 2 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|257388253|ref|YP_003178026.1| - 5.5e-09 35.6 0.2 2.5e-08 33.4 0.1 2.0 2 0 0 2 2 2 1 FAD binding domain FAD_binding_3 PF01494.19 gi|257388253|ref|YP_003178026.1| - 5.4e-08 32.5 0.3 1.3e-07 31.2 0.3 1.6 1 1 0 1 1 1 1 FAD binding domain Trp_halogenase PF04820.14 gi|257388253|ref|YP_003178026.1| - 7.2e-08 31.7 0.2 0.0013 17.7 0.0 2.7 2 1 1 3 3 3 2 Tryptophan halogenase Pyr_redox_2 PF07992.14 gi|257388253|ref|YP_003178026.1| - 2.1e-06 27.2 0.3 1.8e-05 24.2 0.1 2.0 1 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|257388253|ref|YP_003178026.1| - 3.2e-05 23.2 0.1 0.012 14.7 0.1 2.1 2 0 0 2 2 2 2 Glucose inhibited division protein A HI0933_like PF03486.14 gi|257388253|ref|YP_003178026.1| - 5.6e-05 22.0 0.0 0.00055 18.8 0.0 2.0 2 0 0 2 2 2 1 HI0933-like protein FAD_oxidored PF12831.7 gi|257388253|ref|YP_003178026.1| - 0.00011 21.7 3.6 0.00075 19.0 3.0 2.1 1 1 0 1 1 1 1 FAD dependent oxidoreductase Lycopene_cycl PF05834.12 gi|257388253|ref|YP_003178026.1| - 0.00011 21.4 0.7 0.0025 16.9 0.3 2.6 2 1 0 2 2 2 1 Lycopene cyclase protein Thi4 PF01946.17 gi|257388253|ref|YP_003178026.1| - 0.00016 21.0 0.0 0.00065 19.0 0.0 1.8 2 0 0 2 2 2 1 Thi4 family NAD_binding_8 PF13450.6 gi|257388253|ref|YP_003178026.1| - 0.0006 20.0 0.1 0.002 18.3 0.1 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.6 gi|257388253|ref|YP_003178026.1| - 0.0058 15.9 0.0 0.0091 15.3 0.0 1.3 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase XdhC_C PF13478.6 gi|257388253|ref|YP_003178026.1| - 0.081 13.4 0.1 0.23 11.9 0.0 1.8 2 0 0 2 2 2 0 XdhC Rossmann domain 3HCDH_N PF02737.18 gi|257388253|ref|YP_003178026.1| - 0.095 12.6 0.1 0.14 12.0 0.1 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox PF00070.27 gi|257388253|ref|YP_003178026.1| - 0.13 12.9 0.0 0.27 11.8 0.0 1.6 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.18 gi|257388253|ref|YP_003178026.1| - 0.14 12.4 0.0 0.37 11.1 0.0 1.7 1 0 0 1 1 1 0 TrkA-N domain NAD_binding_7 PF13241.6 gi|257388253|ref|YP_003178026.1| - 0.17 12.4 0.0 0.29 11.6 0.0 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding Aminotran_3 PF00202.21 gi|257388254|ref|YP_003178027.1| - 7.6e-77 258.7 0.0 1.5e-76 257.7 0.0 1.4 1 1 0 1 1 1 1 Aminotransferase class-III DUF4010 PF13194.6 gi|257388255|ref|YP_003178028.1| - 1.1e-51 175.5 30.1 1.1e-51 175.5 30.1 3.0 2 1 1 3 3 3 1 Domain of unknown function (DUF4010) MgtC PF02308.16 gi|257388255|ref|YP_003178028.1| - 3.7e-22 79.0 12.1 3.7e-22 79.0 12.1 3.5 2 1 2 4 4 4 1 MgtC family AI-2E_transport PF01594.16 gi|257388256|ref|YP_003178029.1| - 1.2e-33 116.7 23.4 1.8e-33 116.1 23.4 1.2 1 0 0 1 1 1 1 AI-2E family transporter DUF1427 PF07235.11 gi|257388256|ref|YP_003178029.1| - 0.24 11.3 10.1 0.072 13.0 6.5 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF1427) PadR PF03551.14 gi|257388257|ref|YP_003178030.1| - 3.9e-18 65.2 2.0 4.7e-18 64.9 2.0 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family DUF1495 PF07381.11 gi|257388257|ref|YP_003178030.1| - 0.0014 18.4 0.0 0.0022 17.8 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) HTH_45 PF14947.6 gi|257388257|ref|YP_003178030.1| - 0.0084 16.1 0.0 0.011 15.7 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_27 PF13463.6 gi|257388257|ref|YP_003178030.1| - 0.018 15.5 0.1 0.023 15.2 0.1 1.3 1 1 0 1 1 1 0 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|257388257|ref|YP_003178030.1| - 0.046 13.6 0.0 1.8 8.5 0.0 2.2 2 0 0 2 2 2 0 MarR family DUF4364 PF14277.6 gi|257388257|ref|YP_003178030.1| - 0.072 12.8 0.0 0.083 12.6 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) HTH_34 PF13601.6 gi|257388257|ref|YP_003178030.1| - 0.12 12.6 0.0 0.14 12.4 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain Cdc6_C PF09079.11 gi|257388258|ref|YP_003178031.1| - 0.00039 20.3 0.1 0.0004 20.3 0.1 1.1 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain HypA PF01155.19 gi|257388259|ref|YP_003178032.1| - 0.0074 16.3 0.6 0.012 15.6 0.6 1.3 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|257388259|ref|YP_003178032.1| - 0.053 13.6 1.2 0.13 12.4 1.2 1.6 1 1 0 1 1 1 0 Zinc ribbon domain DZR PF12773.7 gi|257388259|ref|YP_003178032.1| - 0.06 13.4 0.4 0.11 12.6 0.4 1.3 1 0 0 1 1 1 0 Double zinc ribbon DNA_RNApol_7kD PF03604.13 gi|257388259|ref|YP_003178032.1| - 0.11 12.2 0.7 0.24 11.1 0.7 1.6 1 1 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Zn_Tnp_IS1595 PF12760.7 gi|257388259|ref|YP_003178032.1| - 0.11 12.4 2.6 4.2 7.4 0.1 2.4 1 1 1 2 2 2 0 Transposase zinc-ribbon domain TFIIS_C PF01096.18 gi|257388259|ref|YP_003178032.1| - 0.18 11.7 2.6 20 5.1 0.7 3.2 3 0 0 3 3 3 0 Transcription factor S-II (TFIIS) zf-RRN7 PF11781.8 gi|257388259|ref|YP_003178032.1| - 0.74 9.5 4.1 7.8 6.3 0.2 2.3 1 1 1 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 DUF1451 PF07295.11 gi|257388259|ref|YP_003178032.1| - 0.76 9.8 2.9 0.69 9.9 0.4 2.2 3 0 0 3 3 3 0 Zinc-ribbon containing domain NUDIX PF00293.28 gi|257388260|ref|YP_003178033.1| - 2e-05 24.7 0.6 3.2e-05 24.0 0.6 1.4 1 1 0 1 1 1 1 NUDIX domain DUF5130 PF17174.4 gi|257388260|ref|YP_003178033.1| - 0.07 13.3 0.1 0.097 12.9 0.1 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5130) THF_DHG_CYH_C PF02882.19 gi|257388261|ref|YP_003178034.1| - 1.8e-67 225.6 1.4 2.6e-67 225.1 1.4 1.2 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain THF_DHG_CYH PF00763.23 gi|257388261|ref|YP_003178034.1| - 1.8e-35 121.7 0.3 2.8e-35 121.1 0.3 1.3 1 0 0 1 1 1 1 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain SHMT PF00464.19 gi|257388263|ref|YP_003178036.1| - 4.1e-153 509.7 0.0 4.9e-153 509.5 0.0 1.0 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_1_2 PF00155.21 gi|257388263|ref|YP_003178036.1| - 7.7e-11 41.8 0.0 1.5e-10 40.8 0.0 1.5 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|257388263|ref|YP_003178036.1| - 1.2e-05 24.7 0.0 6.9e-05 22.3 0.0 1.9 1 1 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|257388263|ref|YP_003178036.1| - 0.026 13.8 0.3 0.042 13.1 0.3 1.5 1 1 0 1 1 1 0 DegT/DnrJ/EryC1/StrS aminotransferase family CHAT PF12770.7 gi|257388264|ref|YP_003178037.1| - 0.059 12.8 0.1 0.14 11.5 0.1 1.6 1 1 0 1 1 1 0 CHAT domain MarR PF01047.22 gi|257388265|ref|YP_003178038.1| - 0.099 12.6 0.2 10 6.2 0.0 2.5 2 0 0 2 2 2 0 MarR family T6SS_VasE PF05936.12 gi|257388265|ref|YP_003178038.1| - 0.1 11.3 0.0 0.18 10.5 0.0 1.4 1 0 0 1 1 1 0 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE YcaO PF02624.16 gi|257388266|ref|YP_003178039.1| - 1.1e-49 169.4 8.7 2e-49 168.6 8.7 1.4 1 0 0 1 1 1 1 YcaO cyclodehydratase, ATP-ad Mg2+-binding DUF63 PF01889.17 gi|257388268|ref|YP_003178041.1| - 8.2e-36 124.6 10.3 8e-35 121.3 10.0 2.3 2 1 0 2 2 2 1 Membrane protein of unknown function DUF63 Inositol_P PF00459.25 gi|257388269|ref|YP_003178042.1| - 2.8e-46 158.2 2.4 3.5e-46 157.9 2.4 1.0 1 0 0 1 1 1 1 Inositol monophosphatase family DUF4187 PF13821.6 gi|257388271|ref|YP_003178044.1| - 0.00084 19.1 1.3 0.0012 18.5 1.3 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4187) zf-ribbon_3 PF13248.6 gi|257388271|ref|YP_003178044.1| - 0.041 13.3 0.7 0.11 11.9 0.7 1.7 1 1 0 1 1 1 0 zinc-ribbon domain zf-Di19 PF05605.12 gi|257388271|ref|YP_003178044.1| - 0.072 13.4 0.5 0.11 12.8 0.5 1.3 1 0 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding DUF309 PF03745.14 gi|257388272|ref|YP_003178045.1| - 6.2e-16 57.8 0.6 9.5e-16 57.2 0.6 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF309) AstE_AspA PF04952.14 gi|257388273|ref|YP_003178046.1| - 8.1e-19 67.8 0.0 2e-18 66.5 0.0 1.5 1 1 0 1 1 1 1 Succinylglutamate desuccinylase / Aspartoacylase family Peptidase_M99 PF17033.5 gi|257388273|ref|YP_003178046.1| - 0.0028 17.2 0.0 0.0036 16.8 0.0 1.2 1 0 0 1 1 1 1 Carboxypeptidase controlling helical cell shape catalytic Peptidase_M14 PF00246.24 gi|257388273|ref|YP_003178046.1| - 0.25 11.1 0.1 1.1 9.0 0.0 1.9 2 0 0 2 2 2 0 Zinc carboxypeptidase UPF0179 PF03684.13 gi|257388274|ref|YP_003178047.1| - 2.9e-46 156.9 0.0 3.2e-46 156.7 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0179) DDE_Tnp_1_6 PF13751.6 gi|257388274|ref|YP_003178047.1| - 0.018 15.3 0.4 0.032 14.5 0.0 1.6 2 0 0 2 2 2 0 Transposase DDE domain PAS_4 PF08448.10 gi|257388275|ref|YP_003178048.1| - 7.3e-10 39.1 4.2 4.2e-09 36.6 0.5 3.4 4 0 0 4 4 4 1 PAS fold HisKA PF00512.25 gi|257388275|ref|YP_003178048.1| - 3.4e-05 23.8 0.1 9.1e-05 22.4 0.1 1.8 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain DUF1349 PF07081.11 gi|257388275|ref|YP_003178048.1| - 0.00042 20.1 0.1 0.00089 19.0 0.1 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF1349) GH43_C2 PF17851.1 gi|257388275|ref|YP_003178048.1| - 0.01 15.6 0.0 0.018 14.8 0.0 1.4 1 0 0 1 1 1 1 Beta xylosidase C-terminal Concanavalin A-like domain sCache_3_2 PF17203.4 gi|257388275|ref|YP_003178048.1| - 0.073 13.2 0.3 2.9 8.0 0.0 2.8 2 0 0 2 2 2 0 Single cache domain 3 PspB PF06667.12 gi|257388275|ref|YP_003178048.1| - 0.22 11.6 1.7 1.7 8.8 0.1 2.4 2 0 0 2 2 2 0 Phage shock protein B HATPase_c PF02518.26 gi|257388276|ref|YP_003178049.1| - 1.1e-11 45.2 0.0 2.6e-11 44.0 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|257388276|ref|YP_003178049.1| - 8.6e-10 38.9 0.7 8.6e-10 38.9 0.7 2.4 3 0 0 3 3 3 1 PAS fold HisKA PF00512.25 gi|257388276|ref|YP_003178049.1| - 2.3e-06 27.5 0.1 6.4e-06 26.1 0.1 1.7 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain DUF1349 PF07081.11 gi|257388276|ref|YP_003178049.1| - 2e-05 24.4 0.0 6.7e-05 22.7 0.0 1.8 1 1 0 1 1 1 1 Protein of unknown function (DUF1349) HATPase_c_2 PF13581.6 gi|257388276|ref|YP_003178049.1| - 0.005 16.8 0.0 0.02 14.9 0.0 2.1 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain CALCOCO1 PF07888.11 gi|257388276|ref|YP_003178049.1| - 0.02 13.8 0.1 0.03 13.2 0.1 1.1 1 0 0 1 1 1 0 Calcium binding and coiled-coil domain (CALCOCO1) like DUF4482 PF14818.6 gi|257388276|ref|YP_003178049.1| - 0.039 14.8 0.0 0.075 13.9 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4482) Striatin PF08232.12 gi|257388276|ref|YP_003178049.1| - 0.35 11.4 2.8 0.68 10.5 2.8 1.4 1 0 0 1 1 1 0 Striatin family PrkA PF06798.12 gi|257388278|ref|YP_003178051.1| - 6e-70 235.8 6.7 6e-70 235.8 6.7 2.2 2 0 0 2 2 2 1 PrkA serine protein kinase C-terminal domain AAA_PrkA PF08298.11 gi|257388278|ref|YP_003178051.1| - 5e-65 219.8 0.0 7.8e-65 219.1 0.0 1.3 1 0 0 1 1 1 1 PrkA AAA domain AAA_18 PF13238.6 gi|257388278|ref|YP_003178051.1| - 0.068 13.7 0.0 7 7.2 0.0 2.9 2 0 0 2 2 2 0 AAA domain Lsr2 PF11774.8 gi|257388278|ref|YP_003178051.1| - 0.5 10.5 3.6 0.28 11.3 0.7 2.1 2 0 0 2 2 2 0 Lsr2 PrkA PF06798.12 gi|257388279|ref|YP_003178052.1| - 3.6e-40 138.2 0.1 6.6e-40 137.4 0.1 1.4 1 0 0 1 1 1 1 PrkA serine protein kinase C-terminal domain AAA_PrkA PF08298.11 gi|257388279|ref|YP_003178052.1| - 1.3e-17 63.8 0.0 6.4e-12 45.1 0.0 3.2 2 1 0 2 2 2 2 PrkA AAA domain AAA_22 PF13401.6 gi|257388279|ref|YP_003178052.1| - 0.092 13.0 0.1 0.69 10.2 0.0 2.6 2 1 0 2 2 2 0 AAA domain DUF444 PF04285.12 gi|257388280|ref|YP_003178053.1| - 1.2e-127 426.6 0.3 1.3e-127 426.4 0.3 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF444) Tautomerase_2 PF14552.6 gi|257388280|ref|YP_003178053.1| - 0.056 13.5 0.1 0.19 11.9 0.1 1.8 1 0 0 1 1 1 0 Tautomerase enzyme DUF3738 PF12543.8 gi|257388280|ref|YP_003178053.1| - 0.08 13.1 0.1 4.2 7.5 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF3738) SpoVR PF04293.13 gi|257388281|ref|YP_003178054.1| - 2e-87 293.6 3.3 1.6e-72 244.5 0.3 2.2 2 0 0 2 2 2 2 SpoVR like protein FAD_binding_7 PF03441.14 gi|257388282|ref|YP_003178055.1| - 8.1e-63 211.6 1.3 1.2e-62 211.0 1.3 1.3 1 0 0 1 1 1 1 FAD binding domain of DNA photolyase DNA_photolyase PF00875.18 gi|257388282|ref|YP_003178055.1| - 6e-45 153.2 0.0 1.2e-44 152.2 0.0 1.5 1 0 0 1 1 1 1 DNA photolyase Usp PF00582.26 gi|257388282|ref|YP_003178055.1| - 0.063 13.8 0.0 0.12 12.9 0.0 1.4 1 0 0 1 1 1 0 Universal stress protein family AMP-binding PF00501.28 gi|257388283|ref|YP_003178056.1| - 8e-93 311.3 0.0 1.1e-92 310.9 0.0 1.2 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|257388283|ref|YP_003178056.1| - 0.0053 17.7 0.0 0.022 15.8 0.0 2.0 1 1 0 1 1 1 1 AMP-binding enzyme C-terminal domain Nop PF01798.18 gi|257388284|ref|YP_003178057.1| - 6.3e-40 137.1 0.0 9.8e-40 136.4 0.0 1.3 1 1 0 1 1 1 1 snoRNA binding domain, fibrillarin PhoU PF01895.19 gi|257388284|ref|YP_003178057.1| - 0.00021 21.7 0.6 0.4 11.2 0.0 2.4 2 0 0 2 2 2 2 PhoU domain Packaging_FI PF14000.6 gi|257388284|ref|YP_003178057.1| - 0.0096 16.4 2.2 1.9 9.0 0.4 2.6 1 1 1 2 2 2 2 DNA packaging protein FI DUF1192 PF06698.11 gi|257388284|ref|YP_003178057.1| - 0.16 12.1 3.3 1.4 9.1 0.1 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF1192) Fibrillarin PF01269.17 gi|257388285|ref|YP_003178058.1| - 3.2e-53 180.2 0.0 3.8e-53 179.9 0.0 1.0 1 0 0 1 1 1 1 Fibrillarin GCS2 PF04107.13 gi|257388286|ref|YP_003178059.1| - 5.5e-75 252.4 0.3 6.5e-75 252.2 0.3 1.0 1 0 0 1 1 1 1 Glutamate-cysteine ligase family 2(GCS2) TrmB PF01978.19 gi|257388287|ref|YP_003178060.1| - 1.4e-06 28.0 0.0 2.3e-06 27.4 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|257388287|ref|YP_003178060.1| - 2.2e-06 27.1 0.0 3.3e-06 26.6 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.10 gi|257388287|ref|YP_003178060.1| - 0.00026 20.7 0.1 0.00042 20.1 0.1 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain GntR PF00392.21 gi|257388287|ref|YP_003178060.1| - 0.00041 19.9 0.1 0.00086 18.9 0.1 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family DprA_WH PF17782.1 gi|257388287|ref|YP_003178060.1| - 0.00066 19.7 0.0 0.0019 18.3 0.0 1.7 1 0 0 1 1 1 1 DprA winged helix domain MarR_2 PF12802.7 gi|257388287|ref|YP_003178060.1| - 0.0016 18.3 0.2 0.0028 17.5 0.2 1.4 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|257388287|ref|YP_003178060.1| - 0.0025 17.8 0.1 0.0044 17.0 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|257388287|ref|YP_003178060.1| - 0.0033 17.3 0.0 0.0058 16.5 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|257388287|ref|YP_003178060.1| - 0.0044 16.9 0.0 0.007 16.2 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TFIIE_alpha PF02002.17 gi|257388287|ref|YP_003178060.1| - 0.0094 15.8 0.0 0.017 15.0 0.0 1.4 1 0 0 1 1 1 1 TFIIE alpha subunit Rrf2 PF02082.20 gi|257388287|ref|YP_003178060.1| - 0.021 15.1 0.0 0.035 14.5 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator HTH_Crp_2 PF13545.6 gi|257388287|ref|YP_003178060.1| - 0.053 13.5 0.1 0.09 12.8 0.1 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Fe_dep_repress PF01325.19 gi|257388287|ref|YP_003178060.1| - 0.059 13.6 0.0 0.1 12.8 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_40 PF14493.6 gi|257388287|ref|YP_003178060.1| - 0.088 13.3 0.0 0.16 12.4 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Replic_Relax PF13814.6 gi|257388287|ref|YP_003178060.1| - 0.11 12.6 0.0 0.15 12.1 0.0 1.3 1 0 0 1 1 1 0 Replication-relaxation AbiEi_4 PF13338.6 gi|257388287|ref|YP_003178060.1| - 0.17 12.1 0.1 0.34 11.1 0.1 1.4 1 0 0 1 1 1 0 Transcriptional regulator, AbiEi antitoxin FaeA PF04703.12 gi|257388287|ref|YP_003178060.1| - 0.18 12.2 0.0 0.28 11.6 0.0 1.2 1 0 0 1 1 1 0 FaeA-like protein CTP_transf_like PF01467.26 gi|257388288|ref|YP_003178061.1| - 1.5e-11 44.7 0.0 1.9e-11 44.4 0.0 1.1 1 0 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 gi|257388288|ref|YP_003178061.1| - 0.0026 17.6 0.5 0.023 14.6 0.1 2.1 2 1 0 2 2 2 1 FAD synthetase HTH_19 PF12844.7 gi|257388288|ref|YP_003178061.1| - 0.065 13.3 0.1 15 5.7 0.0 2.2 2 0 0 2 2 2 0 Helix-turn-helix domain TFIIB PF00382.19 gi|257388289|ref|YP_003178062.1| - 1.9e-05 24.6 0.1 2.6e-05 24.2 0.1 1.2 1 0 0 1 1 1 1 Transcription factor TFIIB repeat HATPase_c PF02518.26 gi|257388290|ref|YP_003178063.1| - 6.9e-16 58.8 0.1 2.6e-15 56.9 0.0 2.0 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.6 gi|257388290|ref|YP_003178063.1| - 3.4e-06 26.9 0.0 2.4e-05 24.2 0.0 2.2 1 1 1 2 2 2 1 GHKL domain HATPase_c_2 PF13581.6 gi|257388290|ref|YP_003178063.1| - 9.1e-06 25.7 0.0 1.9e-05 24.6 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain Vma12 PF11712.8 gi|257388290|ref|YP_003178063.1| - 0.0059 16.7 5.6 0.014 15.5 5.6 1.6 1 0 0 1 1 1 1 Endoplasmic reticulum-based factor for assembly of V-ATPase HisKA_4TM PF16926.5 gi|257388290|ref|YP_003178063.1| - 0.006 16.2 11.4 0.041 13.5 11.4 2.7 1 1 0 1 1 1 1 Archaeal 4TM region of histidine kinase MFS_1 PF07690.16 gi|257388290|ref|YP_003178063.1| - 0.0088 15.0 3.0 0.012 14.6 3.0 1.1 1 0 0 1 1 1 1 Major Facilitator Superfamily SPOB_a PF14689.6 gi|257388290|ref|YP_003178063.1| - 0.014 15.1 0.2 0.037 13.8 0.0 1.7 2 0 0 2 2 2 0 Sensor_kinase_SpoOB-type, alpha-helical domain HATPase_c_3 PF13589.6 gi|257388290|ref|YP_003178063.1| - 0.035 13.9 0.0 0.082 12.7 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PNTB PF02233.16 gi|257388290|ref|YP_003178063.1| - 0.092 11.7 1.4 0.2 10.5 1.3 1.6 2 0 0 2 2 2 0 NAD(P) transhydrogenase beta subunit HisKA PF00512.25 gi|257388290|ref|YP_003178063.1| - 0.11 12.5 0.5 0.27 11.3 0.2 1.8 1 1 1 2 2 2 0 His Kinase A (phospho-acceptor) domain Bac_export_3 PF01313.19 gi|257388290|ref|YP_003178063.1| - 0.22 11.5 3.0 0.55 10.2 3.0 1.7 1 0 0 1 1 1 0 Bacterial export proteins, family 3 DUF2570 PF10828.8 gi|257388290|ref|YP_003178063.1| - 0.48 10.3 2.0 2 8.3 0.2 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF2570) zf-ribbon_3 PF13248.6 gi|257388291|ref|YP_003178064.1| - 0.11 12.0 0.7 0.18 11.2 0.7 1.4 1 0 0 1 1 1 0 zinc-ribbon domain Prok-RING_1 PF14446.6 gi|257388291|ref|YP_003178064.1| - 0.23 11.4 2.7 0.22 11.5 1.5 1.6 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 DisA_N PF02457.16 gi|257388293|ref|YP_003178066.1| - 9.3e-22 76.8 0.0 1.5e-21 76.2 0.0 1.3 1 0 0 1 1 1 1 DisA bacterial checkpoint controller nucleotide-binding MS_channel PF00924.18 gi|257388294|ref|YP_003178067.1| - 6.2e-17 61.8 1.2 1.5e-16 60.6 1.2 1.6 1 0 0 1 1 1 1 Mechanosensitive ion channel TM_helix PF05552.12 gi|257388294|ref|YP_003178067.1| - 0.0036 17.3 0.1 0.0036 17.3 0.1 3.6 4 0 0 4 4 4 2 Conserved TM helix SNARE_assoc PF09335.11 gi|257388294|ref|YP_003178067.1| - 0.018 15.5 6.5 0.018 15.5 6.5 2.0 2 0 0 2 2 2 0 SNARE associated Golgi protein DUF3285 PF11688.8 gi|257388294|ref|YP_003178067.1| - 0.8 9.7 0.0 0.8 9.7 0.0 3.5 4 1 0 4 4 4 0 Protein of unknown function (DUF3285) AMP-binding PF00501.28 gi|257388295|ref|YP_003178068.1| - 2.7e-80 270.1 1.3 3.8e-80 269.6 0.1 1.7 2 0 0 2 2 2 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|257388295|ref|YP_003178068.1| - 2.7e-16 60.3 2.9 6.5e-16 59.1 2.9 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain MR_MLE_C PF13378.6 gi|257388296|ref|YP_003178069.1| - 1.4e-43 149.1 6.9 2.3e-43 148.3 6.9 1.3 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|257388296|ref|YP_003178069.1| - 0.0007 19.8 0.4 0.0007 19.8 0.4 2.4 3 1 0 3 3 3 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain UbiA PF01040.18 gi|257388297|ref|YP_003178070.1| - 5.6e-35 120.8 18.5 7.1e-35 120.5 18.5 1.1 1 0 0 1 1 1 1 UbiA prenyltransferase family DoxX PF07681.12 gi|257388298|ref|YP_003178071.1| - 8e-06 26.4 11.3 8e-06 26.4 11.3 1.7 2 0 0 2 2 2 1 DoxX ECH_1 PF00378.20 gi|257388299|ref|YP_003178072.1| - 2.3e-56 190.9 0.0 3.2e-45 154.4 0.0 2.0 1 1 1 2 2 2 2 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|257388299|ref|YP_003178072.1| - 2.2e-14 53.7 0.0 1.6e-06 27.9 0.1 2.2 2 1 0 2 2 2 2 Enoyl-CoA hydratase/isomerase CAP PF00188.26 gi|257388299|ref|YP_003178072.1| - 0.15 12.9 0.1 0.51 11.2 0.1 1.9 1 0 0 1 1 1 0 Cysteine-rich secretory protein family MR_MLE_C PF13378.6 gi|257388300|ref|YP_003178073.1| - 2.6e-53 180.8 0.3 3.6e-53 180.4 0.3 1.2 1 0 0 1 1 1 1 Enolase C-terminal domain-like MR_MLE_N PF02746.16 gi|257388300|ref|YP_003178073.1| - 2.6e-14 53.4 0.0 5.7e-14 52.3 0.0 1.6 1 0 0 1 1 1 1 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MCPsignal PF00015.21 gi|257388301|ref|YP_003178074.1| - 5.6e-41 140.2 46.6 3.6e-39 134.3 22.5 3.5 2 2 0 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF948 PF06103.11 gi|257388301|ref|YP_003178074.1| - 2.7e-11 43.6 29.2 0.0031 17.7 4.8 6.3 4 2 1 5 5 4 3 Bacterial protein of unknown function (DUF948) Laminin_II PF06009.12 gi|257388301|ref|YP_003178074.1| - 1.6e-07 31.4 27.9 0.0025 17.8 3.2 5.1 3 2 3 6 6 6 3 Laminin Domain II EzrA PF06160.12 gi|257388301|ref|YP_003178074.1| - 7.4e-05 21.1 29.6 0.0089 14.2 9.3 3.7 3 1 0 3 3 3 3 Septation ring formation regulator, EzrA DUF1664 PF07889.12 gi|257388301|ref|YP_003178074.1| - 0.00012 22.1 30.5 0.044 13.8 3.3 5.0 3 2 1 4 4 4 2 Protein of unknown function (DUF1664) BLOC1_2 PF10046.9 gi|257388301|ref|YP_003178074.1| - 0.00016 21.9 30.1 0.016 15.5 0.7 5.9 5 1 1 6 6 5 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 IFT57 PF10498.9 gi|257388301|ref|YP_003178074.1| - 0.00023 20.2 26.8 0.032 13.2 8.6 4.0 3 1 0 3 3 3 1 Intra-flagellar transport protein 57 Atg14 PF10186.9 gi|257388301|ref|YP_003178074.1| - 0.00038 19.7 16.4 0.16 11.0 0.0 3.2 2 1 0 3 3 3 2 Vacuolar sorting 38 and autophagy-related subunit 14 Not3 PF04065.15 gi|257388301|ref|YP_003178074.1| - 0.00079 18.9 26.4 0.0019 17.7 9.5 3.1 2 1 1 3 3 3 1 Not1 N-terminal domain, CCR4-Not complex component Mod_r PF07200.13 gi|257388301|ref|YP_003178074.1| - 0.0012 18.9 29.6 0.59 10.2 0.2 4.1 3 2 1 4 4 4 3 Modifier of rudimentary (Mod(r)) protein TMPIT PF07851.13 gi|257388301|ref|YP_003178074.1| - 0.0014 18.0 14.7 0.24 10.6 1.5 3.5 3 0 0 3 3 3 2 TMPIT-like protein RPW8 PF05659.11 gi|257388301|ref|YP_003178074.1| - 0.0019 17.9 13.2 1 9.0 0.3 5.1 3 2 2 5 5 5 1 Arabidopsis broad-spectrum mildew resistance protein RPW8 NPV_P10 PF05531.12 gi|257388301|ref|YP_003178074.1| - 0.0026 18.2 27.5 0.17 12.3 1.3 5.9 4 2 0 4 4 4 1 Nucleopolyhedrovirus P10 protein YabA PF06156.13 gi|257388301|ref|YP_003178074.1| - 0.0038 17.8 19.4 0.059 14.0 0.0 4.8 3 2 1 4 4 4 1 Initiation control protein YabA Fib_alpha PF08702.10 gi|257388301|ref|YP_003178074.1| - 0.0049 17.1 25.3 0.059 13.5 3.0 4.7 2 1 1 4 4 4 1 Fibrinogen alpha/beta chain family CCDC144C PF14915.6 gi|257388301|ref|YP_003178074.1| - 0.0049 16.0 0.6 0.0049 16.0 0.6 3.1 3 0 0 3 3 3 1 CCDC144C protein coiled-coil region Baculo_PEP_C PF04513.12 gi|257388301|ref|YP_003178074.1| - 0.0061 16.6 17.1 0.28 11.2 3.4 4.3 2 1 1 4 4 4 1 Baculovirus polyhedron envelope protein, PEP, C terminus bZIP_1 PF00170.21 gi|257388301|ref|YP_003178074.1| - 0.0077 16.3 5.6 1.7 8.8 0.2 4.3 3 1 1 4 4 4 1 bZIP transcription factor RasGAP_C PF03836.15 gi|257388301|ref|YP_003178074.1| - 0.0079 16.3 11.8 0.65 10.1 0.0 4.4 2 1 1 3 3 3 1 RasGAP C-terminus SKA2 PF16740.5 gi|257388301|ref|YP_003178074.1| - 0.014 15.2 16.0 3.4 7.5 0.0 4.6 4 1 0 4 4 4 0 Spindle and kinetochore-associated protein 2 dCache_1 PF02743.18 gi|257388301|ref|YP_003178074.1| - 0.017 14.9 2.4 0.017 14.9 2.4 3.3 2 1 1 3 3 2 0 Cache domain TPR_MLP1_2 PF07926.12 gi|257388301|ref|YP_003178074.1| - 0.019 15.0 43.3 0.078 13.0 1.6 4.1 3 1 0 3 3 3 0 TPR/MLP1/MLP2-like protein TMF_TATA_bd PF12325.8 gi|257388301|ref|YP_003178074.1| - 0.023 14.9 0.1 0.023 14.9 0.1 4.4 3 2 1 4 4 4 0 TATA element modulatory factor 1 TATA binding Mce4_CUP1 PF11887.8 gi|257388301|ref|YP_003178074.1| - 0.024 14.1 12.5 0.032 13.7 0.3 3.2 2 1 2 4 4 4 0 Cholesterol uptake porter CUP1 of Mce4, putative Prefoldin_2 PF01920.20 gi|257388301|ref|YP_003178074.1| - 0.029 14.3 27.6 0.13 12.2 0.2 5.5 3 2 2 5 5 5 0 Prefoldin subunit LOH1CR12 PF10158.9 gi|257388301|ref|YP_003178074.1| - 0.031 14.3 12.8 0.6 10.1 0.9 3.7 2 1 1 3 3 3 0 Tumour suppressor protein Med9 PF07544.13 gi|257388301|ref|YP_003178074.1| - 0.034 14.2 16.5 9 6.5 2.4 5.0 5 0 0 5 5 4 0 RNA polymerase II transcription mediator complex subunit 9 DHR10 PF18595.1 gi|257388301|ref|YP_003178074.1| - 0.035 14.2 0.5 0.035 14.2 0.5 5.6 3 1 2 6 6 5 0 Designed helical repeat protein 10 domain CorA PF01544.18 gi|257388301|ref|YP_003178074.1| - 0.038 13.3 22.5 0.052 12.9 3.9 3.1 2 1 1 3 3 3 0 CorA-like Mg2+ transporter protein Seryl_tRNA_N PF02403.22 gi|257388301|ref|YP_003178074.1| - 0.055 13.7 31.0 0.16 12.2 0.1 5.3 2 1 2 5 5 5 0 Seryl-tRNA synthetase N-terminal domain LMBR1 PF04791.16 gi|257388301|ref|YP_003178074.1| - 0.065 12.1 11.4 0.35 9.7 0.0 2.5 1 1 1 2 2 2 0 LMBR1-like membrane protein DUF4407 PF14362.6 gi|257388301|ref|YP_003178074.1| - 0.077 12.3 38.8 1.5 8.1 1.6 3.2 1 1 2 3 3 3 0 Domain of unknown function (DUF4407) ZapB PF06005.12 gi|257388301|ref|YP_003178074.1| - 0.091 13.2 0.3 0.091 13.2 0.3 4.7 2 1 1 3 3 2 0 Cell division protein ZapB DUF812 PF05667.11 gi|257388301|ref|YP_003178074.1| - 0.093 11.6 36.2 0.0085 15.0 8.5 3.5 1 1 1 3 3 3 0 Protein of unknown function (DUF812) ATG16 PF08614.11 gi|257388301|ref|YP_003178074.1| - 0.095 12.9 0.4 0.095 12.9 0.4 4.3 2 1 2 4 4 4 0 Autophagy protein 16 (ATG16) TolA_bind_tri PF16331.5 gi|257388301|ref|YP_003178074.1| - 0.097 12.8 20.3 1 9.5 0.2 4.5 4 1 0 4 4 3 0 TolA binding protein trimerisation KxDL PF10241.9 gi|257388301|ref|YP_003178074.1| - 0.11 12.7 9.2 6.6 7.1 2.5 4.9 4 1 1 5 5 5 0 Uncharacterized conserved protein GAS PF13851.6 gi|257388301|ref|YP_003178074.1| - 0.16 11.3 26.8 0.49 9.7 10.6 3.8 4 1 0 4 4 4 0 Growth-arrest specific micro-tubule binding SlyX PF04102.12 gi|257388301|ref|YP_003178074.1| - 0.16 12.6 0.3 0.16 12.6 0.3 6.3 5 2 1 6 6 4 0 SlyX YkyA PF10368.9 gi|257388301|ref|YP_003178074.1| - 0.24 11.0 44.4 0.64 9.7 6.5 4.9 3 2 1 5 5 5 0 Putative cell-wall binding lipoprotein DUF3450 PF11932.8 gi|257388301|ref|YP_003178074.1| - 0.25 10.6 35.6 0.16 11.2 8.2 4.3 2 1 3 5 5 5 0 Protein of unknown function (DUF3450) Taxilin PF09728.9 gi|257388301|ref|YP_003178074.1| - 0.41 9.8 15.5 1.4 8.0 3.0 3.0 1 1 1 2 2 2 0 Myosin-like coiled-coil protein DivIC PF04977.15 gi|257388301|ref|YP_003178074.1| - 0.46 10.3 0.0 0.46 10.3 0.0 4.8 5 0 0 5 5 4 0 Septum formation initiator DASH_Dam1 PF08653.10 gi|257388301|ref|YP_003178074.1| - 0.49 10.2 15.1 17 5.3 0.1 6.0 5 2 2 7 7 6 0 DASH complex subunit Dam1 Sipho_Gp157 PF05565.11 gi|257388301|ref|YP_003178074.1| - 0.52 10.3 0.0 0.52 10.3 0.0 3.9 2 1 0 3 3 2 0 Siphovirus Gp157 Prominin PF05478.11 gi|257388301|ref|YP_003178074.1| - 0.52 8.2 16.5 8.1 4.3 14.8 2.4 2 1 0 2 2 2 0 Prominin DUF4200 PF13863.6 gi|257388301|ref|YP_003178074.1| - 0.55 10.7 24.3 0.72 10.3 5.3 3.8 3 1 0 3 3 3 0 Domain of unknown function (DUF4200) APG17 PF04108.12 gi|257388301|ref|YP_003178074.1| - 0.57 9.2 29.5 1.8 7.6 0.1 3.6 1 1 1 3 3 3 0 Autophagy protein Apg17 CREPT PF16566.5 gi|257388301|ref|YP_003178074.1| - 0.68 10.1 17.5 1.9 8.7 3.1 4.3 2 1 0 3 3 3 0 Cell-cycle alteration and expression-elevated protein in tumour Spc7 PF08317.11 gi|257388301|ref|YP_003178074.1| - 0.79 8.5 37.2 0.63 8.9 0.2 3.5 2 1 0 3 3 3 0 Spc7 kinetochore protein CENP-H PF05837.12 gi|257388301|ref|YP_003178074.1| - 0.93 9.9 35.9 0.97 9.9 3.0 5.1 2 1 3 5 5 5 0 Centromere protein H (CENP-H) DUF2203 PF09969.9 gi|257388301|ref|YP_003178074.1| - 1.1 10.0 28.3 4 8.2 3.7 4.9 2 1 2 5 5 5 0 Uncharacterized conserved protein (DUF2203) Syntaxin-6_N PF09177.11 gi|257388301|ref|YP_003178074.1| - 1.1 9.9 27.3 0.36 11.4 4.7 4.5 2 1 0 3 3 3 0 Syntaxin 6, N-terminal Golgin_A5 PF09787.9 gi|257388301|ref|YP_003178074.1| - 1.2 8.5 36.9 0.48 9.8 11.8 3.5 2 1 1 3 3 3 0 Golgin subfamily A member 5 Cep57_MT_bd PF06657.13 gi|257388301|ref|YP_003178074.1| - 1.3 9.6 21.7 12 6.4 0.8 5.5 5 3 0 5 5 3 0 Centrosome microtubule-binding domain of Cep57 SKA1 PF07160.12 gi|257388301|ref|YP_003178074.1| - 1.3 8.8 23.5 8.8 6.1 8.5 3.5 2 1 2 4 4 4 0 Spindle and kinetochore-associated protein 1 Dynamitin PF04912.14 gi|257388301|ref|YP_003178074.1| - 1.5 8.1 35.8 0.041 13.2 5.7 4.5 2 1 3 5 5 5 0 Dynamitin ssDNA_TraI_N PF18272.1 gi|257388301|ref|YP_003178074.1| - 1.5 8.9 4.5 0.83 9.7 0.4 2.9 3 0 0 3 3 1 0 single-stranded DNA binding TraI N-terminal subdomain COG2 PF06148.11 gi|257388301|ref|YP_003178074.1| - 2 8.5 28.5 2.8 8.1 0.2 5.8 3 2 3 6 6 6 0 COG (conserved oligomeric Golgi) complex component, COG2 USP8_interact PF08941.10 gi|257388301|ref|YP_003178074.1| - 2.2 8.1 12.7 3.6 7.4 1.0 3.7 3 1 1 4 4 4 0 USP8 interacting Occludin_ELL PF07303.13 gi|257388301|ref|YP_003178074.1| - 2.4 8.9 13.4 18 6.1 0.6 5.0 3 2 2 5 5 5 0 Occludin homology domain Spore_III_AB PF09548.10 gi|257388301|ref|YP_003178074.1| - 2.5 8.2 15.3 1.8 8.6 0.0 4.1 2 1 2 4 4 4 0 Stage III sporulation protein AB (spore_III_AB) DUF1192 PF06698.11 gi|257388301|ref|YP_003178074.1| - 3.3 7.8 11.7 0.4 10.8 1.0 4.5 3 1 1 4 4 3 0 Protein of unknown function (DUF1192) ApoO PF09769.9 gi|257388301|ref|YP_003178074.1| - 3.4 7.6 9.6 3 7.8 0.5 4.2 3 2 1 4 4 3 0 Apolipoprotein O HCMV_UL139 PF12507.8 gi|257388301|ref|YP_003178074.1| - 3.8 7.9 8.9 7.7 6.9 0.2 3.7 3 2 1 4 4 3 0 Human Cytomegalovirus UL139 protein Baculo_F PF12259.8 gi|257388301|ref|YP_003178074.1| - 4.1 5.8 12.2 6.6 5.1 2.4 3.4 2 1 1 4 4 4 0 Baculovirus F protein Sec34 PF04136.15 gi|257388301|ref|YP_003178074.1| - 4.1 7.3 24.1 3.2 7.6 1.3 5.1 3 1 1 5 5 5 0 Sec34-like family Dor1 PF04124.12 gi|257388301|ref|YP_003178074.1| - 4.2 6.0 18.2 4.5 5.9 4.9 3.2 2 1 1 3 3 3 0 Dor1-like family Vps51 PF08700.11 gi|257388301|ref|YP_003178074.1| - 4.2 7.5 16.3 11 6.1 0.2 5.3 4 1 1 5 5 5 0 Vps51/Vps67 AATF-Che1 PF13339.6 gi|257388301|ref|YP_003178074.1| - 4.5 7.9 22.2 0.41 11.3 2.9 3.8 1 1 2 3 3 3 0 Apoptosis antagonizing transcription factor Rx_N PF18052.1 gi|257388301|ref|YP_003178074.1| - 4.6 7.6 21.2 27 5.1 0.2 5.2 2 2 0 2 2 1 0 Rx N-terminal domain FH2 PF02181.23 gi|257388301|ref|YP_003178074.1| - 4.6 6.3 18.0 2.2 7.3 5.7 3.2 3 0 0 3 3 3 0 Formin Homology 2 Domain DUF16 PF01519.16 gi|257388301|ref|YP_003178074.1| - 5.9 7.4 25.7 16 6.0 6.1 4.7 2 1 0 3 3 3 0 Protein of unknown function DUF16 ADIP PF11559.8 gi|257388301|ref|YP_003178074.1| - 6.1 6.9 24.5 1.8 8.6 0.2 3.7 3 1 1 4 4 4 0 Afadin- and alpha -actinin-Binding Jnk-SapK_ap_N PF09744.9 gi|257388301|ref|YP_003178074.1| - 8.3 6.6 33.9 1.8 8.8 10.3 3.9 3 1 1 4 4 4 0 JNK_SAPK-associated protein-1 ING PF12998.7 gi|257388301|ref|YP_003178074.1| - 8.3 7.1 14.6 41 4.8 0.0 4.0 3 1 1 4 4 4 0 Inhibitor of growth proteins N-terminal histone-binding Serine_rich PF08824.10 gi|257388301|ref|YP_003178074.1| - 8.8 6.3 12.5 2.7 8.0 2.1 3.6 2 1 0 3 3 3 0 Serine rich protein interaction domain AP_endonuc_2 PF01261.24 gi|257388302|ref|YP_003178075.1| - 1.2e-34 119.6 2.7 1.5e-34 119.3 2.3 1.3 1 1 0 1 1 1 1 Xylose isomerase-like TIM barrel AP_endonuc_2_N PF07582.12 gi|257388302|ref|YP_003178075.1| - 1.7e-20 72.5 0.0 3.2e-20 71.6 0.0 1.5 1 0 0 1 1 1 1 AP endonuclease family 2 C terminus DUF3122 PF11320.8 gi|257388302|ref|YP_003178075.1| - 0.086 12.9 0.0 0.25 11.4 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3122) AIM24 PF01987.17 gi|257388303|ref|YP_003178076.1| - 2.9e-55 187.2 0.1 3.3e-55 187.0 0.1 1.0 1 0 0 1 1 1 1 Mitochondrial biogenesis AIM24 GFO_IDH_MocA PF01408.22 gi|257388304|ref|YP_003178077.1| - 4.3e-15 56.6 0.0 6.6e-15 56.0 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|257388304|ref|YP_003178077.1| - 1e-11 44.9 0.1 2.3e-11 43.7 0.1 1.7 1 1 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain Peptidase_M24 PF00557.24 gi|257388305|ref|YP_003178078.1| - 2.3e-07 30.7 0.2 3.8e-07 30.0 0.2 1.3 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|257388305|ref|YP_003178078.1| - 0.0032 18.1 0.3 0.016 15.9 0.1 2.2 1 1 1 2 2 2 1 Creatinase/Prolidase N-terminal domain Prok-TraM PF09228.10 gi|257388305|ref|YP_003178078.1| - 0.071 13.5 0.3 0.15 12.4 0.3 1.6 1 0 0 1 1 1 0 Prokaryotic Transcriptional repressor TraM Alpha-amylase PF00128.24 gi|257388306|ref|YP_003178079.1| - 8.9e-109 364.1 0.2 1.4e-108 363.5 0.2 1.2 1 0 0 1 1 1 1 Alpha amylase, catalytic domain Malt_amylase_C PF16657.5 gi|257388306|ref|YP_003178079.1| - 4.5e-09 36.3 0.1 3.6e-08 33.4 0.0 2.4 3 0 0 3 3 3 1 Maltogenic Amylase, C-terminal domain DUF3459 PF11941.8 gi|257388306|ref|YP_003178079.1| - 8.9e-05 22.7 0.0 0.00025 21.3 0.0 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF3459) Alpha-amylase_C PF02806.18 gi|257388306|ref|YP_003178079.1| - 0.00016 22.0 0.0 0.00043 20.7 0.0 1.7 1 0 0 1 1 1 1 Alpha amylase, C-terminal all-beta domain Cyc-maltodext_C PF10438.9 gi|257388306|ref|YP_003178079.1| - 0.0015 18.6 0.0 0.0032 17.5 0.0 1.4 1 0 0 1 1 1 1 Cyclo-malto-dextrinase C-terminal domain hDGE_amylase PF14701.6 gi|257388306|ref|YP_003178079.1| - 0.0046 16.1 0.0 0.0069 15.5 0.0 1.1 1 0 0 1 1 1 1 Glycogen debranching enzyme, glucanotransferase domain Pribosyltran PF00156.27 gi|257388307|ref|YP_003178080.1| - 6e-20 71.4 0.0 8.7e-20 70.8 0.0 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain HTH_23 PF13384.6 gi|257388307|ref|YP_003178080.1| - 0.0025 17.5 0.0 0.0049 16.6 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain HTH_7 PF02796.15 gi|257388307|ref|YP_003178080.1| - 0.0087 16.1 0.0 0.019 15.0 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain of resolvase PRTase_2 PF15609.6 gi|257388307|ref|YP_003178080.1| - 0.026 14.0 0.1 0.059 12.9 0.0 1.6 2 0 0 2 2 2 0 Phosphoribosyl transferase Sigma70_r4 PF04545.16 gi|257388307|ref|YP_003178080.1| - 0.028 13.9 0.0 0.049 13.2 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_11 PF08279.12 gi|257388307|ref|YP_003178080.1| - 0.032 14.2 0.1 0.11 12.5 0.0 1.9 2 0 0 2 2 2 0 HTH domain HTH_38 PF13936.6 gi|257388307|ref|YP_003178080.1| - 0.081 12.7 0.0 0.77 9.6 0.0 2.4 2 0 0 2 2 2 0 Helix-turn-helix domain UPRTase PF14681.6 gi|257388307|ref|YP_003178080.1| - 0.12 11.8 0.0 0.17 11.3 0.0 1.2 1 0 0 1 1 1 0 Uracil phosphoribosyltransferase HTH_Crp_2 PF13545.6 gi|257388307|ref|YP_003178080.1| - 0.16 11.9 0.0 0.35 10.9 0.0 1.5 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain zinc_ribbon_9 PF14369.6 gi|257388308|ref|YP_003178081.1| - 0.044 14.1 2.2 1.3 9.3 0.7 2.6 2 0 0 2 2 2 0 zinc-ribbon zinc_ribbon_5 PF13719.6 gi|257388308|ref|YP_003178081.1| - 0.22 11.3 1.7 1.3 8.9 0.2 2.3 2 0 0 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|257388308|ref|YP_003178081.1| - 0.35 11.0 6.4 5.3 7.2 0.2 2.3 1 1 1 2 2 2 0 Zinc ribbon domain UPF0547 PF10571.9 gi|257388308|ref|YP_003178081.1| - 0.58 10.3 6.2 6.6 6.9 0.1 2.4 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 DUF3039 PF11238.8 gi|257388308|ref|YP_003178081.1| - 1.1 9.0 4.1 0.36 10.6 1.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3039) TF_Zn_Ribbon PF08271.12 gi|257388308|ref|YP_003178081.1| - 4.1 7.0 7.1 17 5.0 0.3 2.8 2 1 1 3 3 3 0 TFIIB zinc-binding Regulator_TrmB PF11495.8 gi|257388309|ref|YP_003178082.1| - 1.7e-75 253.2 0.1 2.2e-75 252.9 0.1 1.1 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.19 gi|257388309|ref|YP_003178082.1| - 2.1e-16 59.5 0.0 3.6e-16 58.8 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|257388309|ref|YP_003178082.1| - 0.00014 21.7 0.0 0.00036 20.3 0.0 1.7 1 0 0 1 1 1 1 MarR family PadR PF03551.14 gi|257388309|ref|YP_003178082.1| - 0.0051 16.7 0.0 0.012 15.6 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_24 PF13412.6 gi|257388309|ref|YP_003178082.1| - 0.0091 15.5 0.0 0.06 12.9 0.0 2.2 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|257388309|ref|YP_003178082.1| - 0.017 15.0 0.0 0.057 13.4 0.0 2.0 1 0 0 1 1 1 0 MarR family HTH_20 PF12840.7 gi|257388309|ref|YP_003178082.1| - 0.024 14.7 0.2 0.17 12.0 0.0 2.4 3 0 0 3 3 3 0 Helix-turn-helix domain GntR PF00392.21 gi|257388309|ref|YP_003178082.1| - 0.048 13.3 0.0 6.5 6.5 0.0 2.4 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_5 PF01022.20 gi|257388309|ref|YP_003178082.1| - 0.051 13.4 0.0 0.12 12.2 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|257388309|ref|YP_003178082.1| - 0.056 13.3 0.0 0.28 11.0 0.0 2.0 2 0 0 2 2 2 0 IclR helix-turn-helix domain HTH_27 PF13463.6 gi|257388309|ref|YP_003178082.1| - 0.069 13.7 0.0 0.2 12.2 0.0 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain Rrf2 PF02082.20 gi|257388309|ref|YP_003178082.1| - 0.13 12.6 0.0 0.63 10.4 0.0 2.1 2 0 0 2 2 2 0 Transcriptional regulator PLDc_2 PF13091.6 gi|257388309|ref|YP_003178082.1| - 0.15 11.9 0.0 0.29 11.0 0.0 1.4 1 0 0 1 1 1 0 PLD-like domain SBP_bac_1 PF01547.25 gi|257388310|ref|YP_003178083.1| - 3.7e-17 63.3 0.5 7.8e-17 62.2 0.5 1.5 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|257388310|ref|YP_003178083.1| - 7.5e-17 62.1 0.0 1.2e-16 61.4 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.9 gi|257388310|ref|YP_003178083.1| - 0.00055 19.7 5.9 0.0015 18.3 5.9 1.8 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_1 PF00528.22 gi|257388311|ref|YP_003178084.1| - 6e-16 58.7 19.9 6e-16 58.7 19.9 2.5 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|257388312|ref|YP_003178085.1| - 3.1e-13 49.8 19.6 3.1e-13 49.8 19.6 2.4 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component TRAP-gamma PF07074.12 gi|257388312|ref|YP_003178085.1| - 1.2 8.7 0.0 1.2 8.7 0.0 2.7 4 0 0 4 4 4 0 Translocon-associated protein, gamma subunit (TRAP-gamma) ABC_tran PF00005.27 gi|257388313|ref|YP_003178086.1| - 2.1e-33 115.7 0.0 4.2e-33 114.8 0.0 1.5 1 0 0 1 1 1 1 ABC transporter OB_MalK PF17912.1 gi|257388313|ref|YP_003178086.1| - 5.7e-11 43.1 0.1 1.5e-10 41.8 0.1 1.8 1 0 0 1 1 1 1 MalK OB fold domain AAA_21 PF13304.6 gi|257388313|ref|YP_003178086.1| - 9.2e-08 32.2 0.0 0.0035 17.2 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|257388313|ref|YP_003178086.1| - 2.4e-06 27.2 0.0 0.0067 15.9 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain CysA_C_terminal PF17850.1 gi|257388313|ref|YP_003178086.1| - 0.00012 22.5 0.7 0.00045 20.7 0.3 2.2 2 0 0 2 2 2 1 CysA C-terminal regulatory domain TOBE_2 PF08402.10 gi|257388313|ref|YP_003178086.1| - 0.00032 20.8 0.3 0.0024 18.0 0.1 2.5 1 1 1 2 2 2 1 TOBE domain AAA_15 PF13175.6 gi|257388313|ref|YP_003178086.1| - 0.00035 20.4 0.0 0.14 11.8 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_5 PF07728.14 gi|257388313|ref|YP_003178086.1| - 0.0018 18.3 0.0 0.0064 16.5 0.0 1.9 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_29 PF13555.6 gi|257388313|ref|YP_003178086.1| - 0.0026 17.5 0.0 0.0056 16.4 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.6 gi|257388313|ref|YP_003178086.1| - 0.004 17.6 0.2 0.011 16.1 0.0 2.0 2 1 0 2 2 2 1 AAA ATPase domain Rad17 PF03215.15 gi|257388313|ref|YP_003178086.1| - 0.004 17.1 0.0 0.0058 16.6 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain RsgA_GTPase PF03193.16 gi|257388313|ref|YP_003178086.1| - 0.007 16.3 0.0 0.017 15.0 0.0 1.6 2 0 0 2 2 2 1 RsgA GTPase AAA_22 PF13401.6 gi|257388313|ref|YP_003178086.1| - 0.012 15.9 0.4 0.033 14.5 0.1 1.8 2 0 0 2 2 2 0 AAA domain AAA PF00004.29 gi|257388313|ref|YP_003178086.1| - 0.015 15.7 1.4 0.12 12.8 1.4 2.2 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) RNA_helicase PF00910.22 gi|257388313|ref|YP_003178086.1| - 0.033 14.6 0.0 0.081 13.3 0.0 1.7 1 0 0 1 1 1 0 RNA helicase AAA_23 PF13476.6 gi|257388313|ref|YP_003178086.1| - 0.054 14.0 0.0 0.097 13.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|257388313|ref|YP_003178086.1| - 0.061 13.0 0.1 0.18 11.5 0.0 1.8 2 0 0 2 2 2 0 AAA domain TOBE PF03459.17 gi|257388313|ref|YP_003178086.1| - 0.12 12.7 0.0 19 5.6 0.0 3.0 2 1 0 2 2 2 0 TOBE domain AAA_24 PF13479.6 gi|257388313|ref|YP_003178086.1| - 0.13 11.9 0.4 0.27 10.9 0.0 1.6 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|257388313|ref|YP_003178086.1| - 0.37 11.4 2.1 1.9 9.1 0.4 2.5 3 1 0 3 3 2 0 AAA domain AAA_28 PF13521.6 gi|257388313|ref|YP_003178086.1| - 0.54 10.5 2.7 0.44 10.8 0.6 1.9 2 0 0 2 2 2 0 AAA domain YrvL PF14184.6 gi|257388314|ref|YP_003178087.1| - 0.024 14.7 0.0 0.028 14.5 0.0 1.0 1 0 0 1 1 1 0 Regulatory protein YrvL CD225 PF04505.12 gi|257388314|ref|YP_003178087.1| - 0.063 13.4 0.0 0.064 13.4 0.0 1.2 1 0 0 1 1 1 0 Interferon-induced transmembrane protein LMBR1 PF04791.16 gi|257388314|ref|YP_003178087.1| - 0.099 11.5 0.0 0.11 11.4 0.0 1.0 1 0 0 1 1 1 0 LMBR1-like membrane protein DUF3915 PF13054.6 gi|257388314|ref|YP_003178087.1| - 0.14 12.1 0.5 0.14 12.1 0.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3915) GFO_IDH_MocA PF01408.22 gi|257388315|ref|YP_003178088.1| - 1.1e-20 74.7 0.1 1.8e-20 73.9 0.1 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold GFO_IDH_MocA_C PF02894.17 gi|257388315|ref|YP_003178088.1| - 4.3e-12 46.1 0.0 9.2e-12 45.0 0.0 1.6 1 0 0 1 1 1 1 Oxidoreductase family, C-terminal alpha/beta domain F420_oxidored PF03807.17 gi|257388315|ref|YP_003178088.1| - 0.00016 22.2 0.0 0.00028 21.4 0.0 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_3 PF03447.16 gi|257388315|ref|YP_003178088.1| - 0.0067 17.1 0.2 0.011 16.3 0.2 1.3 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain IlvN PF07991.12 gi|257388315|ref|YP_003178088.1| - 0.037 13.6 0.1 0.066 12.8 0.1 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain 2-Hacid_dh_C PF02826.19 gi|257388315|ref|YP_003178088.1| - 0.1 12.0 0.0 0.17 11.2 0.0 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Glu_dehyd_C PF16912.5 gi|257388316|ref|YP_003178089.1| - 1e-94 316.0 0.0 1.2e-94 315.7 0.0 1.1 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus ADH_N PF08240.12 gi|257388316|ref|YP_003178089.1| - 2.6e-09 36.9 0.0 4.1e-09 36.3 0.0 1.3 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-like domain ADH_N_2 PF16884.5 gi|257388316|ref|YP_003178089.1| - 0.00016 21.5 0.1 0.00039 20.3 0.1 1.6 1 0 0 1 1 1 1 N-terminal domain of oxidoreductase ADH_zinc_N PF00107.26 gi|257388316|ref|YP_003178089.1| - 0.0052 16.8 0.0 0.0087 16.0 0.0 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Regulator_TrmB PF11495.8 gi|257388317|ref|YP_003178090.1| - 2.7e-59 200.2 0.1 3.5e-59 199.8 0.1 1.2 1 0 0 1 1 1 1 Archaeal transcriptional regulator TrmB TrmB PF01978.19 gi|257388317|ref|YP_003178090.1| - 6e-19 67.7 0.0 1.4e-18 66.5 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.7 gi|257388317|ref|YP_003178090.1| - 6.9e-05 22.8 0.1 0.00018 21.5 0.1 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|257388317|ref|YP_003178090.1| - 0.00018 21.3 0.0 0.00044 20.1 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|257388317|ref|YP_003178090.1| - 0.00021 21.1 0.1 0.00096 19.0 0.0 2.0 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_IclR PF09339.10 gi|257388317|ref|YP_003178090.1| - 0.00055 19.7 0.0 0.0014 18.4 0.0 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain Rrf2 PF02082.20 gi|257388317|ref|YP_003178090.1| - 0.022 15.1 0.0 0.058 13.7 0.0 1.6 1 0 0 1 1 1 0 Transcriptional regulator HTH_24 PF13412.6 gi|257388317|ref|YP_003178090.1| - 0.044 13.4 0.0 0.13 11.8 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Keratin_assoc PF09775.9 gi|257388317|ref|YP_003178090.1| - 0.24 11.0 0.0 0.4 10.3 0.0 1.2 1 0 0 1 1 1 0 Keratinocyte-associated protein 2 Glycos_transf_2 PF00535.26 gi|257388318|ref|YP_003178091.1| - 1.7e-21 76.7 0.1 2.2e-21 76.4 0.1 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|257388318|ref|YP_003178091.1| - 4e-05 23.6 0.3 5.1e-05 23.3 0.3 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Gluconate_2-dh3 PF13618.6 gi|257388319|ref|YP_003178092.1| - 4.7e-08 33.4 0.0 5.9e-08 33.0 0.0 1.2 1 0 0 1 1 1 1 Gluconate 2-dehydrogenase subunit 3 PMT_2 PF13231.6 gi|257388320|ref|YP_003178093.1| - 1.2e-08 35.4 6.3 1.2e-08 35.4 6.3 2.8 4 0 0 4 4 4 1 Dolichyl-phosphate-mannose-protein mannosyltransferase SKG6 PF08693.10 gi|257388320|ref|YP_003178093.1| - 0.38 10.2 0.1 0.38 10.2 0.1 3.9 4 0 0 4 4 4 0 Transmembrane alpha-helix domain ABC_tran PF00005.27 gi|257388321|ref|YP_003178094.1| - 8.5e-36 123.5 0.0 1.4e-35 122.8 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 gi|257388321|ref|YP_003178094.1| - 5e-10 39.4 0.2 1.7e-09 37.7 0.1 2.1 2 0 0 2 2 2 1 TOBE domain AAA_21 PF13304.6 gi|257388321|ref|YP_003178094.1| - 2.5e-06 27.5 0.1 0.0096 15.8 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system Rad17 PF03215.15 gi|257388321|ref|YP_003178094.1| - 0.00082 19.3 0.0 0.0013 18.7 0.0 1.2 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_16 PF13191.6 gi|257388321|ref|YP_003178094.1| - 0.0011 19.4 0.2 0.0023 18.3 0.2 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|257388321|ref|YP_003178094.1| - 0.0027 18.1 0.2 0.031 14.7 0.2 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|257388321|ref|YP_003178094.1| - 0.0096 16.2 1.7 0.059 13.6 1.7 2.0 1 1 0 1 1 1 1 AAA domain SbcCD_C PF13558.6 gi|257388321|ref|YP_003178094.1| - 0.033 14.4 0.2 0.43 10.8 0.2 2.4 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit RsgA_GTPase PF03193.16 gi|257388321|ref|YP_003178094.1| - 0.045 13.7 0.0 0.1 12.5 0.0 1.5 2 0 0 2 2 2 0 RsgA GTPase G-alpha PF00503.20 gi|257388321|ref|YP_003178094.1| - 0.074 12.2 0.0 0.095 11.8 0.0 1.2 1 0 0 1 1 1 0 G-protein alpha subunit AAA_30 PF13604.6 gi|257388321|ref|YP_003178094.1| - 0.075 12.8 0.1 0.27 10.9 0.1 1.9 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|257388321|ref|YP_003178094.1| - 0.21 11.8 1.1 2.5 8.3 1.1 2.3 1 1 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|257388321|ref|YP_003178094.1| - 0.25 11.6 3.0 0.83 9.9 0.3 2.6 2 1 1 3 3 3 0 AAA domain BPD_transp_1 PF00528.22 gi|257388322|ref|YP_003178095.1| - 1.2e-27 96.8 30.1 6.8e-17 61.8 9.7 3.4 2 2 2 4 4 4 2 Binding-protein-dependent transport system inner membrane component SBP_bac_6 PF13343.6 gi|257388323|ref|YP_003178096.1| - 3.6e-12 46.2 0.0 5.5e-12 45.6 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.6 gi|257388323|ref|YP_003178096.1| - 3.3e-10 40.2 0.4 4.3e-10 39.9 0.4 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|257388323|ref|YP_003178096.1| - 1.9e-08 34.4 1.9 2.6e-08 33.9 1.9 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|257388323|ref|YP_003178096.1| - 8.6e-07 29.2 0.5 2.7e-06 27.6 0.5 1.7 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein TAT_signal PF10518.9 gi|257388323|ref|YP_003178096.1| - 0.0068 16.2 4.1 0.018 14.9 4.1 1.7 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence RGP PF03214.13 gi|257388324|ref|YP_003178097.1| - 5.6e-15 55.3 0.0 7.8e-15 54.9 0.0 1.2 1 0 0 1 1 1 1 Reversibly glycosylated polypeptide DUF434 PF04256.12 gi|257388325|ref|YP_003178098.1| - 0.038 13.7 0.1 0.041 13.6 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF434) adh_short_C2 PF13561.6 gi|257388326|ref|YP_003178099.1| - 8.6e-63 212.0 1.8 1e-62 211.8 1.8 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|257388326|ref|YP_003178099.1| - 3.9e-57 192.9 1.2 4.8e-57 192.6 1.2 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|257388326|ref|YP_003178099.1| - 5.8e-22 78.5 0.4 7.4e-22 78.1 0.4 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|257388326|ref|YP_003178099.1| - 0.0031 17.0 0.4 0.0041 16.6 0.4 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3HCDH_N PF02737.18 gi|257388326|ref|YP_003178099.1| - 0.11 12.3 0.6 0.21 11.4 0.6 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Carboxyl_trans PF01039.22 gi|257388327|ref|YP_003178100.1| - 8e-195 648.2 0.0 9.1e-195 648.0 0.0 1.0 1 0 0 1 1 1 1 Carboxyl transferase domain MdcE PF06833.11 gi|257388327|ref|YP_003178100.1| - 0.0011 18.5 0.1 0.0035 16.9 0.0 1.7 2 0 0 2 2 2 1 Malonate decarboxylase gamma subunit (MdcE) MtmB PF05369.12 gi|257388327|ref|YP_003178100.1| - 0.15 10.8 0.0 0.26 10.1 0.0 1.3 1 0 0 1 1 1 0 Monomethylamine methyltransferase MtmB YukD PF08817.10 gi|257388328|ref|YP_003178101.1| - 0.03 15.0 0.3 0.055 14.2 0.3 1.5 1 1 0 1 1 1 0 WXG100 protein secretion system (Wss), protein YukD zinc_ribbon_4 PF13717.6 gi|257388329|ref|YP_003178102.1| - 0.00036 20.4 0.2 0.00053 19.8 0.2 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_5 PF13719.6 gi|257388329|ref|YP_003178102.1| - 0.00047 19.8 0.2 0.00064 19.4 0.2 1.2 1 0 0 1 1 1 1 zinc-ribbon domain Stc1 PF12898.7 gi|257388329|ref|YP_003178102.1| - 0.00051 20.5 0.3 0.00059 20.3 0.3 1.1 1 0 0 1 1 1 1 Stc1 domain Zn_Tnp_IS1 PF03811.13 gi|257388329|ref|YP_003178102.1| - 0.0071 16.1 0.8 0.013 15.2 0.8 1.4 1 1 0 1 1 1 1 InsA N-terminal domain zinc-ribbons_6 PF07191.12 gi|257388329|ref|YP_003178102.1| - 0.009 16.0 0.5 0.012 15.6 0.5 1.3 1 0 0 1 1 1 1 zinc-ribbons HypA PF01155.19 gi|257388329|ref|YP_003178102.1| - 0.013 15.5 0.3 0.013 15.5 0.3 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA NMD3 PF04981.13 gi|257388329|ref|YP_003178102.1| - 0.03 13.8 0.4 0.03 13.8 0.4 1.0 1 0 0 1 1 1 0 NMD3 family DUF2310 PF10071.9 gi|257388329|ref|YP_003178102.1| - 0.12 11.6 2.6 0.15 11.3 2.6 1.1 1 0 0 1 1 1 0 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) PhnA_Zn_Ribbon PF08274.12 gi|257388329|ref|YP_003178102.1| - 0.24 11.4 4.4 0.78 9.7 1.2 2.1 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zf-RING_7 PF02591.15 gi|257388329|ref|YP_003178102.1| - 0.43 10.8 3.0 0.86 9.8 0.1 2.1 2 0 0 2 2 2 0 C4-type zinc ribbon domain Thiolase_N PF00108.23 gi|257388330|ref|YP_003178103.1| - 9.1e-59 198.9 0.0 1.2e-58 198.5 0.0 1.1 1 0 0 1 1 1 1 Thiolase, N-terminal domain Thiolase_C PF02803.18 gi|257388330|ref|YP_003178103.1| - 2.1e-08 33.9 0.1 4e-08 32.9 0.1 1.4 1 0 0 1 1 1 1 Thiolase, C-terminal domain Ketoacyl-synt_C PF02801.22 gi|257388330|ref|YP_003178103.1| - 0.021 14.9 0.1 4.6 7.3 0.0 3.2 3 0 0 3 3 3 0 Beta-ketoacyl synthase, C-terminal domain ketoacyl-synt PF00109.26 gi|257388330|ref|YP_003178103.1| - 0.098 12.2 0.5 0.38 10.3 0.1 2.1 2 1 1 3 3 3 0 Beta-ketoacyl synthase, N-terminal domain OB_aCoA_assoc PF01796.17 gi|257388331|ref|YP_003178104.1| - 2.4e-06 27.4 4.3 3.2e-06 27.0 4.3 1.2 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|257388331|ref|YP_003178104.1| - 0.013 15.4 0.6 0.021 14.7 0.6 1.3 1 0 0 1 1 1 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Cys_rich_CPXG PF14255.6 gi|257388331|ref|YP_003178104.1| - 0.026 14.4 0.0 0.046 13.6 0.0 1.4 1 0 0 1 1 1 0 Cysteine-rich CPXCG zf-ribbon_3 PF13248.6 gi|257388331|ref|YP_003178104.1| - 0.038 13.4 0.1 0.076 12.4 0.1 1.5 1 0 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|257388331|ref|YP_003178104.1| - 0.048 13.4 0.6 0.09 12.5 0.6 1.4 1 0 0 1 1 1 0 zinc-ribbon domain SasG_E PF17041.5 gi|257388331|ref|YP_003178104.1| - 1.5 8.9 4.6 15 5.7 0.1 3.4 4 0 0 4 4 4 0 E domain TPR_14 PF13428.6 gi|257388333|ref|YP_003178106.1| - 0.017 15.9 3.6 0.28 12.1 0.7 2.7 2 0 0 2 2 2 0 Tetratricopeptide repeat Ferritin PF00210.24 gi|257388335|ref|YP_003178108.1| - 2e-32 112.1 4.2 2.3e-32 111.9 4.2 1.0 1 0 0 1 1 1 1 Ferritin-like domain DUF2383 PF09537.10 gi|257388335|ref|YP_003178108.1| - 0.0088 16.4 0.2 0.08 13.3 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF2383) Tautomerase PF01361.21 gi|257388335|ref|YP_003178108.1| - 0.061 13.2 0.1 0.29 11.1 0.0 2.0 2 0 0 2 2 2 0 Tautomerase enzyme Med9 PF07544.13 gi|257388336|ref|YP_003178109.1| - 0.083 13.0 0.0 0.13 12.3 0.0 1.3 1 0 0 1 1 1 0 RNA polymerase II transcription mediator complex subunit 9 ATP-grasp_5 PF13549.6 gi|257388337|ref|YP_003178110.1| - 2.5e-73 246.2 0.1 4.4e-73 245.4 0.1 1.4 1 0 0 1 1 1 1 ATP-grasp domain Succ_CoA_lig PF13607.6 gi|257388337|ref|YP_003178110.1| - 3.7e-52 175.8 1.3 9.5e-52 174.5 0.3 2.2 2 0 0 2 2 2 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|257388337|ref|YP_003178110.1| - 6.3e-20 71.8 1.9 1.1e-19 71.0 0.4 2.3 2 0 0 2 2 2 1 CoA binding domain CoA_binding PF02629.19 gi|257388337|ref|YP_003178110.1| - 2.3e-13 50.6 1.7 8.6e-13 48.8 1.7 2.1 1 0 0 1 1 1 1 CoA binding domain ATP-grasp_2 PF08442.10 gi|257388337|ref|YP_003178110.1| - 2.3e-05 24.1 0.0 7.7e-05 22.3 0.0 1.9 1 1 0 1 1 1 1 ATP-grasp domain GFO_IDH_MocA PF01408.22 gi|257388337|ref|YP_003178110.1| - 0.032 15.1 0.8 0.14 13.0 0.1 2.4 2 0 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold DUF4089 PF13318.6 gi|257388337|ref|YP_003178110.1| - 0.15 12.5 0.7 20 5.7 0.1 3.0 2 0 0 2 2 2 0 Protein of unknown function (DUF4089) AAA_26 PF13500.6 gi|257388338|ref|YP_003178111.1| - 1.9e-36 125.7 0.0 9.2e-36 123.5 0.0 1.9 2 0 0 2 2 2 1 AAA domain DRTGG PF07085.12 gi|257388338|ref|YP_003178111.1| - 3.4e-27 94.3 0.2 2.3e-26 91.6 0.0 2.3 3 0 0 3 3 3 1 DRTGG domain CbiA PF01656.23 gi|257388338|ref|YP_003178111.1| - 2.2e-05 24.5 0.0 5.4e-05 23.3 0.0 1.6 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain Hpr_kinase_N PF02603.16 gi|257388338|ref|YP_003178111.1| - 0.019 15.0 0.0 0.14 12.2 0.0 2.1 2 0 0 2 2 2 0 HPr Serine kinase N terminus IstB_IS21 PF01695.17 gi|257388338|ref|YP_003178111.1| - 0.023 14.4 0.0 0.047 13.4 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein ParA PF10609.9 gi|257388338|ref|YP_003178111.1| - 0.047 13.1 0.0 0.09 12.2 0.0 1.4 1 0 0 1 1 1 0 NUBPL iron-transfer P-loop NTPase AAA_26 PF13500.6 gi|257388339|ref|YP_003178112.1| - 1.2e-37 129.7 0.0 1.4e-37 129.4 0.0 1.0 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|257388339|ref|YP_003178112.1| - 9.9e-06 25.6 0.0 1.3e-05 25.2 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain DUF1611 PF07755.11 gi|257388339|ref|YP_003178112.1| - 0.00037 19.8 2.5 0.006 15.9 0.2 2.7 2 1 0 2 2 2 2 Domain of unknown function (DUF1611_C) P-loop domain Aminotran_1_2 PF00155.21 gi|257388340|ref|YP_003178113.1| - 1.8e-55 188.6 0.0 2e-55 188.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.20 gi|257388340|ref|YP_003178113.1| - 0.0029 16.2 0.0 0.0043 15.6 0.0 1.3 1 0 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.17 gi|257388340|ref|YP_003178113.1| - 0.026 13.8 1.1 1.2 8.4 0.3 2.1 2 0 0 2 2 2 0 DegT/DnrJ/EryC1/StrS aminotransferase family Flg_hook PF02120.16 gi|257388340|ref|YP_003178113.1| - 0.11 12.4 0.0 11 6.0 0.0 2.5 2 0 0 2 2 2 0 Flagellar hook-length control protein FliK ELFV_dehydrog PF00208.21 gi|257388341|ref|YP_003178114.1| - 0.00027 20.7 0.1 0.00051 19.8 0.1 1.5 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase GFO_IDH_MocA PF01408.22 gi|257388341|ref|YP_003178114.1| - 0.014 16.2 1.9 2.3 9.1 0.0 3.0 4 0 0 4 4 4 0 Oxidoreductase family, NAD-binding Rossmann fold Radical_SAM PF04055.21 gi|257388342|ref|YP_003178115.1| - 1.8e-16 61.0 0.3 5.2e-15 56.2 0.1 2.2 2 0 0 2 2 2 1 Radical SAM superfamily BATS PF06968.13 gi|257388342|ref|YP_003178115.1| - 3.9e-16 59.0 0.0 7e-16 58.1 0.0 1.4 1 0 0 1 1 1 1 Biotin and Thiamin Synthesis associated domain Pterin_bind PF00809.22 gi|257388342|ref|YP_003178115.1| - 0.018 14.7 0.1 0.053 13.2 0.1 1.8 1 1 0 1 1 1 0 Pterin binding enzyme ThiC_Rad_SAM PF01964.18 gi|257388343|ref|YP_003178116.1| - 4.3e-194 645.1 0.0 5.1e-194 644.8 0.0 1.0 1 0 0 1 1 1 1 Radical SAM ThiC family Nmad3 PF18754.1 gi|257388344|ref|YP_003178117.1| - 2.3e-33 115.8 0.0 2.6e-33 115.7 0.0 1.0 1 0 0 1 1 1 1 Nucleotide modification associated domain 3 ATPase PF06745.13 gi|257388345|ref|YP_003178118.1| - 1.7e-09 37.4 0.0 0.00016 21.1 0.0 2.1 1 1 0 2 2 2 2 KaiC Importin_rep_3 PF18806.1 gi|257388345|ref|YP_003178118.1| - 0.054 13.6 0.0 0.11 12.5 0.0 1.5 1 0 0 1 1 1 0 Importin 13 repeat CbiA PF01656.23 gi|257388346|ref|YP_003178119.1| - 1.9e-10 40.9 0.0 2.9e-10 40.3 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|257388346|ref|YP_003178119.1| - 4.6e-09 36.1 3.6 0.00046 19.7 0.4 2.3 3 0 0 3 3 3 2 NUBPL iron-transfer P-loop NTPase AAA_31 PF13614.6 gi|257388346|ref|YP_003178119.1| - 2.6e-07 30.7 0.0 0.00088 19.2 0.0 2.1 2 0 0 2 2 2 2 AAA domain CBP_BcsQ PF06564.12 gi|257388346|ref|YP_003178119.1| - 2.1e-05 24.1 0.1 0.0015 18.0 0.1 2.1 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ MipZ PF09140.11 gi|257388346|ref|YP_003178119.1| - 7.4e-05 22.2 0.0 0.00014 21.2 0.0 1.5 1 1 0 1 1 1 1 ATPase MipZ AAA_26 PF13500.6 gi|257388346|ref|YP_003178119.1| - 0.00036 20.4 2.1 0.37 10.6 0.1 2.8 2 1 0 3 3 3 2 AAA domain ArsA_ATPase PF02374.15 gi|257388346|ref|YP_003178119.1| - 0.063 12.5 0.8 0.063 12.5 0.8 1.9 2 0 0 2 2 2 0 Anion-transporting ATPase VirC1 PF07015.11 gi|257388346|ref|YP_003178119.1| - 0.14 11.4 0.8 11 5.2 0.0 2.1 2 0 0 2 2 2 0 VirC1 protein OTCace_N PF02729.21 gi|257388347|ref|YP_003178120.1| - 5.1e-44 149.9 0.0 1.3e-43 148.6 0.0 1.6 2 0 0 2 2 2 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain OTCace PF00185.24 gi|257388347|ref|YP_003178120.1| - 4e-29 101.7 0.0 5.7e-29 101.2 0.0 1.2 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain PyrI PF01948.18 gi|257388348|ref|YP_003178121.1| - 4.3e-33 113.4 0.4 5.5e-33 113.1 0.4 1.1 1 0 0 1 1 1 1 Aspartate carbamoyltransferase regulatory chain, allosteric domain PyrI_C PF02748.15 gi|257388348|ref|YP_003178121.1| - 3.5e-13 49.2 0.6 3.5e-13 49.2 0.6 1.6 2 0 0 2 2 2 1 Aspartate carbamoyltransferase regulatory chain, metal binding domain DUF4381 PF14316.6 gi|257388349|ref|YP_003178122.1| - 0.043 14.0 0.1 0.057 13.7 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4381) Phage_holin_2_4 PF16082.5 gi|257388349|ref|YP_003178122.1| - 0.088 12.6 0.0 0.16 11.7 0.0 1.4 1 0 0 1 1 1 0 Bacteriophage holin family, superfamily II-like DUF4010 PF13194.6 gi|257388349|ref|YP_003178122.1| - 0.13 12.0 0.0 0.17 11.6 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4010) SKG6 PF08693.10 gi|257388349|ref|YP_003178122.1| - 0.45 10.0 4.9 0.14 11.6 1.8 1.8 2 0 0 2 2 2 0 Transmembrane alpha-helix domain FKBP_C PF00254.28 gi|257388350|ref|YP_003178123.1| - 2.3e-06 27.8 0.1 5.9e-06 26.5 0.1 1.7 1 0 0 1 1 1 1 FKBP-type peptidyl-prolyl cis-trans isomerase CYTH PF01928.21 gi|257388351|ref|YP_003178124.1| - 5.7e-41 140.4 4.2 6.4e-41 140.2 4.2 1.0 1 0 0 1 1 1 1 CYTH domain AdoMet_Synthase PF01941.19 gi|257388352|ref|YP_003178125.1| - 6.4e-174 578.4 3.4 7.2e-174 578.2 3.4 1.0 1 0 0 1 1 1 1 S-adenosylmethionine synthetase (AdoMet synthetase) DUF961 PF06125.11 gi|257388352|ref|YP_003178125.1| - 0.02 15.2 0.2 0.12 12.7 0.2 2.0 2 0 0 2 2 2 0 Bacterial protein of unknown function (DUF961) ThiI PF02568.14 gi|257388353|ref|YP_003178126.1| - 5.8e-43 146.8 0.0 8.4e-43 146.2 0.0 1.2 1 0 0 1 1 1 1 Thiamine biosynthesis protein (ThiI) THUMP PF02926.17 gi|257388353|ref|YP_003178126.1| - 6.8e-16 58.7 0.0 1.1e-15 57.9 0.0 1.4 1 0 0 1 1 1 1 THUMP domain tRNA_Me_trans PF03054.16 gi|257388353|ref|YP_003178126.1| - 0.0013 17.6 0.0 0.0019 17.1 0.0 1.2 1 0 0 1 1 1 1 tRNA methyl transferase QueC PF06508.13 gi|257388353|ref|YP_003178126.1| - 0.0088 15.6 0.0 0.15 11.5 0.0 2.2 2 0 0 2 2 2 1 Queuosine biosynthesis protein QueC Metal_resist PF13801.6 gi|257388355|ref|YP_003178128.1| - 0.06 13.5 3.4 0.13 12.5 1.2 2.3 2 0 0 2 2 2 0 Heavy-metal resistance PALP PF00291.25 gi|257388356|ref|YP_003178129.1| - 7.3e-64 216.0 3.3 9.5e-64 215.6 3.3 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme PAS_4 PF08448.10 gi|257388356|ref|YP_003178129.1| - 0.11 12.8 0.0 0.26 11.6 0.0 1.6 1 0 0 1 1 1 0 PAS fold DFP PF04127.15 gi|257388356|ref|YP_003178129.1| - 0.16 11.8 0.2 1 9.1 0.2 2.1 1 1 1 2 2 2 0 DNA / pantothenate metabolism flavoprotein Thioredoxin PF00085.20 gi|257388357|ref|YP_003178130.1| - 0.0011 18.9 0.0 0.0017 18.3 0.0 1.3 1 1 0 1 1 1 1 Thioredoxin Thioredoxin_9 PF14595.6 gi|257388357|ref|YP_003178130.1| - 0.028 14.2 0.0 0.044 13.6 0.0 1.4 1 1 0 1 1 1 0 Thioredoxin AhpC-TSA PF00578.21 gi|257388357|ref|YP_003178130.1| - 0.053 13.4 0.0 0.071 13.0 0.0 1.5 1 1 0 1 1 1 0 AhpC/TSA family UPF0126 PF03458.13 gi|257388358|ref|YP_003178131.1| - 7.8e-32 109.0 30.6 1.9e-18 66.1 9.6 2.7 2 1 1 3 3 3 2 UPF0126 domain Phage_holin_3_6 PF07332.11 gi|257388359|ref|YP_003178132.1| - 1 9.4 14.1 1.3 9.1 14.1 1.1 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III Thioredox_DsbH PF03190.15 gi|257388360|ref|YP_003178133.1| - 1.2e-72 243.2 0.0 2.2e-72 242.3 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function, DUF255 Thioredoxin_7 PF13899.6 gi|257388360|ref|YP_003178133.1| - 3.1e-09 36.9 0.0 1.2e-08 35.0 0.0 2.2 2 0 0 2 2 2 1 Thioredoxin-like GlcNAc_2-epim PF07221.11 gi|257388360|ref|YP_003178133.1| - 5.5e-05 22.6 0.1 0.046 13.0 0.0 2.3 2 0 0 2 2 2 2 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) TAT_signal PF10518.9 gi|257388361|ref|YP_003178134.1| - 0.36 10.8 6.9 0.68 9.9 6.9 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence zf-CXXC PF02008.20 gi|257388361|ref|YP_003178134.1| - 1.9 8.6 5.4 7.7 6.6 0.5 2.6 2 0 0 2 2 2 0 CXXC zinc finger domain GARS_A PF01071.19 gi|257388362|ref|YP_003178135.1| - 1.2e-52 178.5 0.0 2e-52 177.8 0.0 1.4 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GARS_N PF02844.15 gi|257388362|ref|YP_003178135.1| - 1.3e-21 77.1 0.1 2.6e-21 76.2 0.1 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, N domain GARS_C PF02843.16 gi|257388362|ref|YP_003178135.1| - 3.9e-14 52.7 0.5 1.9e-13 50.5 0.1 2.4 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, C domain ATP-grasp_3 PF02655.14 gi|257388362|ref|YP_003178135.1| - 1.3e-05 25.4 0.0 2.3e-05 24.5 0.0 1.4 1 0 0 1 1 1 1 ATP-grasp domain ATPgrasp_ST PF14397.6 gi|257388362|ref|YP_003178135.1| - 0.0087 15.3 0.0 0.015 14.6 0.0 1.3 1 0 0 1 1 1 1 Sugar-transfer associated ATP-grasp ATP-grasp_4 PF13535.6 gi|257388362|ref|YP_003178135.1| - 0.029 14.0 0.0 0.13 11.8 0.0 2.1 2 0 0 2 2 2 0 ATP-grasp domain DpaA_N PF16924.5 gi|257388362|ref|YP_003178135.1| - 0.057 13.5 0.0 0.12 12.5 0.0 1.6 1 0 0 1 1 1 0 Dipicolinate synthase subunit A N-terminal domain CPSase_L_D2 PF02786.17 gi|257388362|ref|YP_003178135.1| - 0.066 12.7 0.0 0.15 11.5 0.0 1.6 1 0 0 1 1 1 0 Carbamoyl-phosphate synthase L chain, ATP binding domain Hexapep PF00132.24 gi|257388363|ref|YP_003178136.1| - 1e-10 40.9 4.4 1.4e-09 37.3 3.2 2.8 3 0 0 3 3 3 1 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|257388363|ref|YP_003178136.1| - 1.4e-08 34.3 4.9 1.5e-07 31.1 3.3 2.8 3 0 0 3 3 3 1 Hexapeptide repeat of succinyl-transferase TANGO2 PF05742.12 gi|257388364|ref|YP_003178137.1| - 2.1e-25 90.2 0.0 8e-25 88.3 0.0 1.8 1 1 0 1 1 1 1 Transport and Golgi organisation 2 MarR PF01047.22 gi|257388365|ref|YP_003178138.1| - 8.2e-06 25.7 0.0 1.1e-05 25.3 0.0 1.2 1 0 0 1 1 1 1 MarR family B-block_TFIIIC PF04182.12 gi|257388365|ref|YP_003178138.1| - 0.00037 20.6 0.0 0.00049 20.2 0.0 1.2 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC MarR_2 PF12802.7 gi|257388365|ref|YP_003178138.1| - 0.0099 15.8 0.0 0.016 15.1 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|257388365|ref|YP_003178138.1| - 0.091 13.3 0.0 0.11 13.0 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain Rio2_N PF09202.11 gi|257388365|ref|YP_003178138.1| - 0.12 12.6 0.0 0.39 11.0 0.0 1.9 1 1 0 1 1 1 0 Rio2, N-terminal Cwf_Cwc_15 PF04889.12 gi|257388366|ref|YP_003178139.1| - 0.71 9.6 17.8 0.073 12.8 8.8 2.0 2 0 0 2 2 2 0 Cwf15/Cwc15 cell cycle control protein DUF4140 PF13600.6 gi|257388366|ref|YP_003178139.1| - 1.3 9.5 6.5 3.5 8.1 0.3 2.1 2 0 0 2 2 2 0 N-terminal domain of unknown function (DUF4140) DUF1980 PF09323.10 gi|257388367|ref|YP_003178140.1| - 0.0045 16.9 2.4 0.0045 16.9 2.4 1.5 2 0 0 2 2 2 1 Domain of unknown function (DUF1980) ABG_transport PF03806.13 gi|257388367|ref|YP_003178140.1| - 0.0051 15.1 0.0 0.0059 14.9 0.0 1.0 1 0 0 1 1 1 1 AbgT putative transporter family DUF412 PF04217.13 gi|257388367|ref|YP_003178140.1| - 0.08 12.8 0.2 0.099 12.5 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function, DUF412 PGF-CTERM PF18204.1 gi|257388368|ref|YP_003178141.1| - 1.8e-05 24.6 7.5 3.8e-05 23.5 7.5 1.6 1 0 0 1 1 1 1 PGF-CTERM motif CARDB PF07705.11 gi|257388368|ref|YP_003178141.1| - 0.0013 18.9 0.3 0.0081 16.4 0.1 2.2 1 1 1 2 2 2 1 CARDB HCBP_related PF06594.11 gi|257388368|ref|YP_003178141.1| - 0.02 14.8 0.0 9.5 6.2 0.0 2.4 2 0 0 2 2 2 0 Haemolysin-type calcium binding protein related domain Glyco_hydro_2 PF00703.21 gi|257388368|ref|YP_003178141.1| - 0.033 14.8 0.4 8.9 7.0 0.1 2.6 2 0 0 2 2 2 0 Glycosyl hydrolases family 2 TRAP_beta PF05753.14 gi|257388368|ref|YP_003178141.1| - 0.061 12.7 0.0 0.11 11.9 0.0 1.3 1 0 0 1 1 1 0 Translocon-associated protein beta (TRAPB) NPCBM_assoc PF10633.9 gi|257388368|ref|YP_003178141.1| - 0.069 13.4 0.3 0.28 11.5 0.3 2.1 1 1 0 1 1 1 0 NPCBM-associated, NEW3 domain of alpha-galactosidase DUF1491 PF07372.12 gi|257388368|ref|YP_003178141.1| - 0.1 13.0 0.0 0.24 11.8 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1491) TMEM238 PF15125.6 gi|257388369|ref|YP_003178142.1| - 0.12 12.6 2.0 1.6 9.0 0.0 2.7 3 0 0 3 3 3 0 TMEM238 protein family Trp_oprn_chp PF09534.10 gi|257388369|ref|YP_003178142.1| - 0.24 11.2 17.7 0.32 10.8 13.1 2.0 2 0 0 2 2 2 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) DUF2797 PF10977.8 gi|257388370|ref|YP_003178143.1| - 6.3e-26 91.7 8.3 1.8e-23 83.7 8.3 2.2 1 1 0 1 1 1 1 Protein of unknown function (DUF2797) Thioredoxin_4 PF13462.6 gi|257388371|ref|YP_003178144.1| - 1.7e-35 122.6 0.0 2.3e-35 122.2 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin DSBA PF01323.20 gi|257388371|ref|YP_003178144.1| - 2.3e-08 34.0 2.2 6.3e-06 26.1 2.2 2.1 1 1 0 1 1 1 1 DSBA-like thioredoxin domain TAT_signal PF10518.9 gi|257388371|ref|YP_003178144.1| - 0.011 15.5 3.2 0.011 15.5 3.2 1.8 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence Thioredoxin_2 PF13098.6 gi|257388371|ref|YP_003178144.1| - 0.014 15.9 0.4 0.044 14.2 0.4 1.8 1 1 0 1 1 1 0 Thioredoxin-like domain Trm56 PF01994.16 gi|257388372|ref|YP_003178145.1| - 3e-45 153.0 0.0 3.8e-45 152.7 0.0 1.1 1 0 0 1 1 1 1 tRNA ribose 2'-O-methyltransferase, aTrm56 ThuA PF06283.11 gi|257388373|ref|YP_003178146.1| - 1.4e-29 103.8 0.1 1.7e-29 103.6 0.1 1.1 1 0 0 1 1 1 1 Trehalose utilisation PsiE PF06146.12 gi|257388374|ref|YP_003178147.1| - 6.2e-15 55.3 6.9 6.2e-15 55.3 6.9 2.1 2 0 0 2 2 2 1 Phosphate-starvation-inducible E RhodobacterPufX PF11511.8 gi|257388374|ref|YP_003178147.1| - 0.0026 17.4 1.0 0.078 12.6 0.1 2.5 2 0 0 2 2 2 1 Intrinsic membrane protein PufX GSDH PF07995.11 gi|257388375|ref|YP_003178148.1| - 1.3e-74 251.5 0.0 1.8e-74 251.0 0.0 1.1 1 0 0 1 1 1 1 Glucose / Sorbosone dehydrogenase TAT_signal PF10518.9 gi|257388375|ref|YP_003178148.1| - 0.12 12.3 1.9 0.28 11.1 1.9 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence TFIIE_alpha PF02002.17 gi|257388376|ref|YP_003178149.1| - 2.6e-20 72.2 0.8 4.3e-20 71.5 0.1 1.7 2 0 0 2 2 2 1 TFIIE alpha subunit zf_UBZ PF18439.1 gi|257388376|ref|YP_003178149.1| - 0.00036 20.0 2.0 0.12 12.0 0.2 2.4 2 0 0 2 2 2 2 Ubiquitin-Binding Zinc Finger Sigma70_r3 PF04539.16 gi|257388376|ref|YP_003178149.1| - 0.0023 18.0 0.7 0.0062 16.6 0.0 2.1 2 0 0 2 2 2 1 Sigma-70 region 3 HypA PF01155.19 gi|257388376|ref|YP_003178149.1| - 0.0081 16.2 0.1 0.011 15.7 0.1 1.3 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|257388376|ref|YP_003178149.1| - 0.02 15.0 4.1 0.053 13.7 4.1 1.7 1 1 0 1 1 1 0 Zinc ribbon domain DZR PF12773.7 gi|257388376|ref|YP_003178149.1| - 0.048 13.7 0.3 0.088 12.8 0.3 1.4 1 0 0 1 1 1 0 Double zinc ribbon zinc-ribbons_6 PF07191.12 gi|257388376|ref|YP_003178149.1| - 0.1 12.6 0.3 0.18 11.8 0.3 1.3 1 0 0 1 1 1 0 zinc-ribbons CpXC PF14353.6 gi|257388376|ref|YP_003178149.1| - 0.11 12.6 0.6 0.61 10.1 0.0 2.2 1 1 1 2 2 2 0 CpXC protein TF_Zn_Ribbon PF08271.12 gi|257388376|ref|YP_003178149.1| - 0.13 11.8 6.5 4.4 6.9 0.6 2.9 1 1 0 2 2 2 0 TFIIB zinc-binding PhnA_Zn_Ribbon PF08274.12 gi|257388376|ref|YP_003178149.1| - 0.15 12.1 1.9 6.6 6.8 0.0 2.3 2 0 0 2 2 2 0 PhnA Zinc-Ribbon zinc_ribbon_4 PF13717.6 gi|257388376|ref|YP_003178149.1| - 0.24 11.3 1.3 2.1 8.3 1.3 2.2 1 1 0 1 1 1 0 zinc-ribbon domain TFIIS_C PF01096.18 gi|257388376|ref|YP_003178149.1| - 0.4 10.6 3.1 9 6.2 0.3 2.3 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) zf-CSL PF05207.13 gi|257388376|ref|YP_003178149.1| - 1.9 8.3 7.1 16 5.3 7.3 2.3 1 1 1 2 2 2 0 CSL zinc finger DUF2110 PF09883.9 gi|257388377|ref|YP_003178150.1| - 1.8e-91 305.7 0.0 2.1e-91 305.5 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2110) MoCF_biosynth PF00994.24 gi|257388379|ref|YP_003178152.1| - 1.5e-33 115.5 0.1 2.1e-33 115.0 0.1 1.2 1 0 0 1 1 1 1 Probable molybdopterin binding domain NBD_C PF17042.5 gi|257388379|ref|YP_003178152.1| - 0.053 14.0 0.1 2.3 8.7 0.0 2.3 2 0 0 2 2 2 0 Nucleotide-binding C-terminal domain Glyco_trans_4_4 PF13579.6 gi|257388379|ref|YP_003178152.1| - 0.068 13.6 1.6 2.5 8.5 1.6 2.3 1 1 0 1 1 1 0 Glycosyl transferase 4-like domain T4bSS_IcmS PF12608.8 gi|257388379|ref|YP_003178152.1| - 0.14 12.5 0.9 8.9 6.7 0.1 2.4 2 0 0 2 2 2 0 Type IVb secretion, IcmS, effector-recruitment NAD_kinase PF01513.21 gi|257388381|ref|YP_003178154.1| - 3e-51 174.3 0.1 3.9e-51 174.0 0.1 1.1 1 0 0 1 1 1 1 ATP-NAD kinase DAGK_cat PF00781.24 gi|257388381|ref|YP_003178154.1| - 2.2e-05 24.1 0.1 2.2e-05 24.1 0.1 2.5 4 0 0 4 4 4 1 Diacylglycerol kinase catalytic domain PFK PF00365.20 gi|257388381|ref|YP_003178154.1| - 0.013 14.9 0.0 0.029 13.7 0.0 1.5 1 0 0 1 1 1 0 Phosphofructokinase PrpR_N PF06506.11 gi|257388381|ref|YP_003178154.1| - 0.076 12.6 0.1 2.6 7.6 0.0 2.4 2 0 0 2 2 2 0 Propionate catabolism activator DHQ_synthase PF01761.20 gi|257388381|ref|YP_003178154.1| - 0.15 11.2 0.3 0.22 10.7 0.3 1.2 1 0 0 1 1 1 0 3-dehydroquinate synthase PhoU PF01895.19 gi|257388382|ref|YP_003178155.1| - 2.2e-17 63.3 5.0 4.2e-13 49.6 0.1 2.3 2 0 0 2 2 2 2 PhoU domain MazE_antitoxin PF04014.18 gi|257388382|ref|YP_003178155.1| - 1.1e-07 31.6 0.0 2.1e-07 30.7 0.0 1.5 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin LEA_2 PF03168.13 gi|257388383|ref|YP_003178156.1| - 5.2e-18 65.4 0.9 2.2e-09 37.8 0.2 2.7 2 1 0 2 2 2 2 Late embryogenesis abundant protein DUF2776 PF10951.8 gi|257388384|ref|YP_003178157.1| - 0.24 10.6 4.0 0.28 10.4 4.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF2776) TMEM100 PF16311.5 gi|257388384|ref|YP_003178157.1| - 1.7 8.3 4.5 2.4 7.8 4.5 1.2 1 0 0 1 1 1 0 Transmembrane protein 100 ABA_WDS PF02496.16 gi|257388384|ref|YP_003178157.1| - 6 7.4 7.2 68 4.0 7.2 2.0 1 1 0 1 1 1 0 ABA/WDS induced protein HTH_AsnC-type PF13404.6 gi|257388385|ref|YP_003178158.1| - 0.0025 17.6 2.3 0.012 15.4 0.9 2.4 2 1 0 2 2 2 1 AsnC-type helix-turn-helix domain LexA_DNA_bind PF01726.16 gi|257388385|ref|YP_003178158.1| - 0.0051 16.5 0.0 0.0061 16.3 0.0 1.2 1 0 0 1 1 1 1 LexA DNA binding domain HTH_24 PF13412.6 gi|257388385|ref|YP_003178158.1| - 0.011 15.2 1.7 0.065 12.8 0.4 2.6 2 1 0 2 2 2 0 Winged helix-turn-helix DNA-binding FaeA PF04703.12 gi|257388385|ref|YP_003178158.1| - 0.017 15.5 0.0 0.021 15.2 0.0 1.2 1 0 0 1 1 1 0 FaeA-like protein Put_DNA-bind_N PF06971.13 gi|257388385|ref|YP_003178158.1| - 0.02 14.9 0.0 0.042 13.9 0.0 1.5 1 0 0 1 1 1 0 Putative DNA-binding protein N-terminus DUF3263 PF11662.8 gi|257388385|ref|YP_003178158.1| - 0.078 12.8 0.1 0.098 12.5 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3263) MarR_2 PF12802.7 gi|257388385|ref|YP_003178158.1| - 0.092 12.7 0.0 0.14 12.1 0.0 1.3 1 0 0 1 1 1 0 MarR family HTH_20 PF12840.7 gi|257388385|ref|YP_003178158.1| - 0.11 12.6 0.0 0.14 12.2 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_23 PF13384.6 gi|257388385|ref|YP_003178158.1| - 0.14 12.0 0.8 10 6.0 0.0 2.4 2 1 0 2 2 2 0 Homeodomain-like domain Polyketide_cyc2 PF10604.9 gi|257388386|ref|YP_003178159.1| - 1.8e-13 51.0 1.8 2e-13 50.8 1.8 1.0 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport COXG PF06240.13 gi|257388386|ref|YP_003178159.1| - 6.4e-05 22.7 0.0 0.00023 20.9 0.0 1.7 1 1 1 2 2 2 2 Carbon monoxide dehydrogenase subunit G (CoxG) Polyketide_cyc PF03364.20 gi|257388386|ref|YP_003178159.1| - 0.035 14.3 0.3 0.05 13.8 0.3 1.3 1 1 0 1 1 1 0 Polyketide cyclase / dehydrase and lipid transport CN_hydrolase PF00795.22 gi|257388387|ref|YP_003178160.1| - 1.5e-46 158.9 0.0 1.7e-46 158.7 0.0 1.0 1 0 0 1 1 1 1 Carbon-nitrogen hydrolase GSDH PF07995.11 gi|257388388|ref|YP_003178161.1| - 1.5e-118 395.9 0.0 1.7e-118 395.7 0.0 1.0 1 0 0 1 1 1 1 Glucose / Sorbosone dehydrogenase Aldedh PF00171.22 gi|257388389|ref|YP_003178162.1| - 3.9e-141 470.7 0.0 4.5e-141 470.5 0.0 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.14 gi|257388389|ref|YP_003178162.1| - 0.037 13.1 0.0 0.063 12.3 0.0 1.4 1 1 0 1 1 1 0 Acyl-CoA reductase (LuxC) OmdA PF13376.6 gi|257388389|ref|YP_003178162.1| - 0.11 12.5 0.4 0.21 11.6 0.4 1.4 1 0 0 1 1 1 0 Bacteriocin-protection, YdeI or OmpD-Associated AAA PF00004.29 gi|257388390|ref|YP_003178163.1| - 1.3e-95 316.9 0.0 1.2e-46 158.4 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|257388390|ref|YP_003178163.1| - 6.5e-26 89.9 5.4 1.6e-12 47.0 1.3 2.7 2 0 0 2 2 2 2 AAA+ lid domain CDC48_N PF02359.18 gi|257388390|ref|YP_003178163.1| - 6.4e-22 77.5 1.1 2e-21 76.0 0.5 2.2 2 0 0 2 2 1 1 Cell division protein 48 (CDC48), N-terminal domain RuvB_N PF05496.12 gi|257388390|ref|YP_003178163.1| - 1.6e-16 60.4 0.0 3.1e-07 30.3 0.0 3.6 3 1 0 3 3 3 2 Holliday junction DNA helicase RuvB P-loop domain AAA_16 PF13191.6 gi|257388390|ref|YP_003178163.1| - 2.4e-15 57.3 1.7 4.3e-07 30.5 0.2 4.4 2 2 0 2 2 2 2 AAA ATPase domain AAA_33 PF13671.6 gi|257388390|ref|YP_003178163.1| - 1.3e-13 51.3 0.0 3.7e-06 27.2 0.0 2.7 2 0 0 2 2 2 2 AAA domain AAA_2 PF07724.14 gi|257388390|ref|YP_003178163.1| - 4.4e-13 49.7 0.0 7.9e-06 26.1 0.0 2.6 2 0 0 2 2 2 2 AAA domain (Cdc48 subfamily) AAA_22 PF13401.6 gi|257388390|ref|YP_003178163.1| - 9e-12 45.4 1.6 0.011 16.0 0.0 4.3 2 2 1 3 3 3 3 AAA domain AAA_5 PF07728.14 gi|257388390|ref|YP_003178163.1| - 1.6e-09 37.9 1.6 0.0033 17.4 0.1 3.8 2 2 0 2 2 2 2 AAA domain (dynein-related subfamily) TIP49 PF06068.13 gi|257388390|ref|YP_003178163.1| - 3.1e-09 36.5 0.0 0.0014 17.9 0.0 2.3 2 0 0 2 2 2 2 TIP49 P-loop domain AAA_18 PF13238.6 gi|257388390|ref|YP_003178163.1| - 1.1e-08 35.7 0.0 0.0091 16.5 0.0 2.9 2 0 0 2 2 2 2 AAA domain AAA_14 PF13173.6 gi|257388390|ref|YP_003178163.1| - 2.7e-08 33.9 0.0 0.006 16.6 0.0 2.4 2 0 0 2 2 2 2 AAA domain IstB_IS21 PF01695.17 gi|257388390|ref|YP_003178163.1| - 2.8e-07 30.5 0.0 0.011 15.5 0.0 2.6 2 0 0 2 2 2 2 IstB-like ATP binding protein AAA_28 PF13521.6 gi|257388390|ref|YP_003178163.1| - 1e-06 29.1 0.0 0.022 15.0 0.0 2.8 2 0 0 2 2 2 2 AAA domain Sigma54_activat PF00158.26 gi|257388390|ref|YP_003178163.1| - 1.4e-06 28.1 0.0 0.11 12.1 0.0 3.5 3 1 0 3 3 3 2 Sigma-54 interaction domain Mg_chelatase PF01078.21 gi|257388390|ref|YP_003178163.1| - 1.9e-06 27.4 0.2 0.048 13.0 0.1 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI TsaE PF02367.17 gi|257388390|ref|YP_003178163.1| - 2.5e-06 27.5 0.0 0.057 13.4 0.0 2.5 2 0 0 2 2 2 2 Threonylcarbamoyl adenosine biosynthesis protein TsaE RNA_helicase PF00910.22 gi|257388390|ref|YP_003178163.1| - 4.4e-06 27.1 0.0 0.099 13.0 0.0 2.7 2 0 0 2 2 2 2 RNA helicase ABC_tran PF00005.27 gi|257388390|ref|YP_003178163.1| - 1.3e-05 25.7 0.0 0.16 12.5 0.0 2.6 2 0 0 2 2 2 2 ABC transporter Parvo_NS1 PF01057.17 gi|257388390|ref|YP_003178163.1| - 1.8e-05 24.0 0.0 0.1 11.7 0.0 2.2 2 0 0 2 2 2 2 Parvovirus non-structural protein NS1 AAA_25 PF13481.6 gi|257388390|ref|YP_003178163.1| - 1.9e-05 24.3 8.7 1.2 8.7 0.1 4.6 2 2 2 5 5 5 1 AAA domain AAA_24 PF13479.6 gi|257388390|ref|YP_003178163.1| - 2.6e-05 24.1 0.0 0.15 11.8 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_3 PF07726.11 gi|257388390|ref|YP_003178163.1| - 3.3e-05 23.7 0.0 0.12 12.2 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_11 PF13086.6 gi|257388390|ref|YP_003178163.1| - 4.8e-05 23.3 0.0 0.093 12.5 0.0 2.4 2 0 0 2 2 2 2 AAA domain DUF815 PF05673.13 gi|257388390|ref|YP_003178163.1| - 5e-05 22.6 0.0 0.014 14.5 0.0 2.4 2 0 0 2 2 2 1 Protein of unknown function (DUF815) Zeta_toxin PF06414.12 gi|257388390|ref|YP_003178163.1| - 5.7e-05 22.5 0.1 0.12 11.6 0.0 2.7 2 1 0 2 2 2 2 Zeta toxin DUF2075 PF09848.9 gi|257388390|ref|YP_003178163.1| - 0.00011 21.5 0.0 0.3 10.3 0.0 2.3 2 0 0 2 2 2 2 Uncharacterized conserved protein (DUF2075) ATPase PF06745.13 gi|257388390|ref|YP_003178163.1| - 0.00013 21.4 0.7 1.3 8.4 0.0 3.7 4 1 0 4 4 3 2 KaiC AAA_7 PF12775.7 gi|257388390|ref|YP_003178163.1| - 0.00016 21.3 0.0 0.3 10.6 0.0 2.7 3 0 0 3 3 3 2 P-loop containing dynein motor region Sigma54_activ_2 PF14532.6 gi|257388390|ref|YP_003178163.1| - 0.0002 21.5 0.0 0.54 10.4 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain NACHT PF05729.12 gi|257388390|ref|YP_003178163.1| - 0.00021 21.3 2.4 1.2 9.1 0.1 3.7 4 0 0 4 4 4 2 NACHT domain PhoH PF02562.16 gi|257388390|ref|YP_003178163.1| - 0.00026 20.5 0.6 0.92 8.9 0.0 2.7 3 0 0 3 3 2 2 PhoH-like protein CDC48_2 PF02933.17 gi|257388390|ref|YP_003178163.1| - 0.00036 20.3 0.1 0.0078 16.0 0.0 2.7 2 0 0 2 2 2 1 Cell division protein 48 (CDC48), domain 2 NB-ARC PF00931.22 gi|257388390|ref|YP_003178163.1| - 0.00046 19.5 0.0 0.27 10.4 0.0 2.4 2 0 0 2 2 2 1 NB-ARC domain AAA_19 PF13245.6 gi|257388390|ref|YP_003178163.1| - 0.00048 20.5 0.2 0.52 10.6 0.0 2.7 2 1 0 2 2 2 1 AAA domain AAA_17 PF13207.6 gi|257388390|ref|YP_003178163.1| - 0.00083 19.8 0.0 0.6 10.5 0.0 2.8 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|257388390|ref|YP_003178163.1| - 0.0048 16.6 5.4 0.45 10.2 0.2 3.6 4 1 0 4 4 3 1 AAA domain TniB PF05621.11 gi|257388390|ref|YP_003178163.1| - 0.0051 16.3 0.1 17 4.8 0.0 3.7 3 1 1 4 4 4 0 Bacterial TniB protein CPT PF07931.12 gi|257388390|ref|YP_003178163.1| - 0.012 15.4 0.0 13 5.6 0.0 3.2 3 0 0 3 3 3 0 Chloramphenicol phosphotransferase-like protein ATPase_2 PF01637.18 gi|257388390|ref|YP_003178163.1| - 0.014 15.3 0.0 1.7 8.5 0.0 2.9 2 1 0 2 2 2 0 ATPase domain predominantly from Archaea DUF1905 PF08922.11 gi|257388390|ref|YP_003178163.1| - 0.015 15.3 0.1 0.04 14.0 0.1 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF1905) Cytidylate_kin PF02224.18 gi|257388390|ref|YP_003178163.1| - 0.021 14.6 0.0 5.3 6.7 0.0 2.7 2 0 0 2 2 2 0 Cytidylate kinase Viral_helicase1 PF01443.18 gi|257388390|ref|YP_003178163.1| - 0.025 14.3 0.0 3.3 7.4 0.0 2.3 2 0 0 2 2 2 0 Viral (Superfamily 1) RNA helicase Bac_DnaA PF00308.18 gi|257388390|ref|YP_003178163.1| - 0.034 14.0 0.0 9.8 5.9 0.0 2.6 2 1 0 2 2 2 0 Bacterial dnaA protein Torsin PF06309.11 gi|257388390|ref|YP_003178163.1| - 0.08 13.1 0.0 2.7 8.1 0.0 2.4 2 0 0 2 2 2 0 Torsin AFG1_ATPase PF03969.16 gi|257388390|ref|YP_003178163.1| - 0.092 11.6 0.0 6.4 5.6 0.0 2.5 3 0 0 3 3 2 0 AFG1-like ATPase NTPase_1 PF03266.15 gi|257388390|ref|YP_003178163.1| - 0.093 12.6 1.0 16 5.4 0.0 3.6 3 1 0 4 4 3 0 NTPase SKI PF01202.22 gi|257388390|ref|YP_003178163.1| - 0.12 12.4 0.0 12 6.0 0.0 2.5 2 0 0 2 2 2 0 Shikimate kinase zf-C2H2_jaz PF12171.8 gi|257388391|ref|YP_003178164.1| - 0.00041 20.6 0.3 0.0006 20.0 0.3 1.3 1 0 0 1 1 1 1 Zinc-finger double-stranded RNA-binding zf-met PF12874.7 gi|257388391|ref|YP_003178164.1| - 0.013 15.8 0.1 0.018 15.4 0.1 1.2 1 0 0 1 1 1 0 Zinc-finger of C2H2 type zf-C2H2 PF00096.26 gi|257388391|ref|YP_003178164.1| - 0.035 14.6 0.1 0.05 14.1 0.1 1.3 1 0 0 1 1 1 0 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 gi|257388391|ref|YP_003178164.1| - 0.051 14.4 0.3 0.069 14.0 0.3 1.3 1 0 0 1 1 1 0 C2H2-type zinc finger RNA_POL_M_15KD PF02150.16 gi|257388391|ref|YP_003178164.1| - 0.058 13.3 2.8 1.8 8.5 0.2 2.1 1 1 1 2 2 2 0 RNA polymerases M/15 Kd subunit OrfB_Zn_ribbon PF07282.11 gi|257388392|ref|YP_003178165.1| - 2.2e-23 82.0 1.6 6.9e-23 80.4 1.6 1.9 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|257388392|ref|YP_003178165.1| - 3.2e-05 24.2 0.0 7.2e-05 23.0 0.0 1.7 1 0 0 1 1 1 1 Probable transposase HypA PF01155.19 gi|257388392|ref|YP_003178165.1| - 0.02 14.9 0.1 0.044 13.8 0.1 1.5 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA KTSC PF13619.6 gi|257388393|ref|YP_003178166.1| - 0.13 12.1 0.0 0.26 11.2 0.0 1.5 1 1 0 1 1 1 0 KTSC domain GHMP_kinases_N PF00288.26 gi|257388394|ref|YP_003178167.1| - 8.5e-12 45.1 1.3 2.1e-11 43.9 1.3 1.7 1 0 0 1 1 1 1 GHMP kinases N terminal domain CM_2 PF01817.21 gi|257388395|ref|YP_003178168.1| - 1.2e-14 54.4 3.2 1.3e-14 54.2 3.2 1.1 1 0 0 1 1 1 1 Chorismate mutase type II DUF3543 PF12063.8 gi|257388395|ref|YP_003178168.1| - 0.038 13.4 0.0 0.044 13.1 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3543) HTH_20 PF12840.7 gi|257388397|ref|YP_003178170.1| - 2.2e-12 46.8 0.0 3.6e-12 46.2 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|257388397|ref|YP_003178170.1| - 6.6e-10 38.7 0.0 8.8e-10 38.3 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|257388397|ref|YP_003178170.1| - 4.8e-08 32.8 0.0 8e-08 32.1 0.0 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|257388397|ref|YP_003178170.1| - 1.1e-07 31.6 0.0 1.7e-07 31.0 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|257388397|ref|YP_003178170.1| - 1.4e-07 31.2 0.0 2.3e-07 30.5 0.0 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|257388397|ref|YP_003178170.1| - 6.8e-07 28.7 0.0 1.5e-06 27.6 0.0 1.6 1 1 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|257388397|ref|YP_003178170.1| - 2.6e-05 23.9 0.0 4.7e-05 23.1 0.0 1.4 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|257388397|ref|YP_003178170.1| - 8.2e-05 22.5 0.0 0.00018 21.4 0.0 1.6 1 0 0 1 1 1 1 HTH domain MarR PF01047.22 gi|257388397|ref|YP_003178170.1| - 0.0003 20.6 0.0 0.00057 19.8 0.0 1.4 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|257388397|ref|YP_003178170.1| - 0.00034 20.5 0.0 0.00066 19.6 0.0 1.5 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Rrf2 PF02082.20 gi|257388397|ref|YP_003178170.1| - 0.00072 19.9 0.0 0.0011 19.3 0.0 1.2 1 0 0 1 1 1 1 Transcriptional regulator HTH_23 PF13384.6 gi|257388397|ref|YP_003178170.1| - 0.00099 18.8 0.0 0.0015 18.2 0.0 1.3 1 0 0 1 1 1 1 Homeodomain-like domain Fe_dep_repress PF01325.19 gi|257388397|ref|YP_003178170.1| - 0.0029 17.8 0.0 0.0044 17.2 0.0 1.2 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain HTH_7 PF02796.15 gi|257388397|ref|YP_003178170.1| - 0.0034 17.4 0.0 0.0094 16.0 0.0 1.7 1 1 1 2 2 2 1 Helix-turn-helix domain of resolvase Sigma70_r4_2 PF08281.12 gi|257388397|ref|YP_003178170.1| - 0.0054 16.4 0.0 0.008 15.8 0.0 1.3 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_30 PF13556.6 gi|257388397|ref|YP_003178170.1| - 0.0057 16.4 0.0 0.013 15.3 0.0 1.6 2 0 0 2 2 2 1 PucR C-terminal helix-turn-helix domain PadR PF03551.14 gi|257388397|ref|YP_003178170.1| - 0.013 15.5 0.0 0.02 14.9 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family GntR PF00392.21 gi|257388397|ref|YP_003178170.1| - 0.018 14.7 0.0 0.029 14.0 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_10 PF04967.12 gi|257388397|ref|YP_003178170.1| - 0.021 14.6 0.0 0.033 14.0 0.0 1.3 1 0 0 1 1 1 0 HTH DNA binding domain HxlR PF01638.17 gi|257388397|ref|YP_003178170.1| - 0.022 14.6 0.0 0.027 14.3 0.0 1.1 1 0 0 1 1 1 0 HxlR-like helix-turn-helix HTH_28 PF13518.6 gi|257388397|ref|YP_003178170.1| - 0.024 14.8 0.0 0.033 14.3 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|257388397|ref|YP_003178170.1| - 0.027 14.0 0.0 0.04 13.4 0.0 1.3 1 0 0 1 1 1 0 Sigma-70, region 4 FUR PF01475.19 gi|257388397|ref|YP_003178170.1| - 0.034 14.3 0.0 0.046 13.9 0.0 1.2 1 0 0 1 1 1 0 Ferric uptake regulator family HTH_22 PF13309.6 gi|257388397|ref|YP_003178170.1| - 0.037 14.1 0.0 0.075 13.1 0.0 1.5 1 0 0 1 1 1 0 HTH domain HTH_27 PF13463.6 gi|257388397|ref|YP_003178170.1| - 0.046 14.2 0.0 0.075 13.5 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_Tnp_ISL3 PF13542.6 gi|257388397|ref|YP_003178170.1| - 0.11 11.9 0.0 0.23 10.9 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain of transposase family ISL3 TFIIE_alpha PF02002.17 gi|257388397|ref|YP_003178170.1| - 0.11 12.4 0.0 0.14 12.1 0.0 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_29 PF13551.6 gi|257388397|ref|YP_003178170.1| - 0.15 12.1 0.0 0.25 11.4 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn helix Cas_Cas02710 PF09670.10 gi|257388398|ref|YP_003178171.1| - 0.028 13.2 0.0 0.04 12.7 0.0 1.1 1 0 0 1 1 1 0 CRISPR-associated protein (Cas_Cas02710) DUF4364 PF14277.6 gi|257388398|ref|YP_003178171.1| - 0.05 13.3 0.0 0.086 12.6 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) Acetyltransf_4 PF13420.7 gi|257388399|ref|YP_003178172.1| - 3.7e-30 105.1 0.0 4.3e-30 104.9 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|257388399|ref|YP_003178172.1| - 8.5e-15 55.0 0.0 1.3e-14 54.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|257388399|ref|YP_003178172.1| - 7.3e-08 32.7 0.0 1.3e-07 32.0 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|257388399|ref|YP_003178172.1| - 1.8e-07 31.9 0.0 2.5e-07 31.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|257388399|ref|YP_003178172.1| - 1.1e-06 28.5 0.0 1.6e-06 28.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|257388399|ref|YP_003178172.1| - 0.00051 20.1 0.1 0.0012 18.9 0.1 1.7 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|257388399|ref|YP_003178172.1| - 0.015 15.2 0.0 0.025 14.5 0.0 1.4 1 0 0 1 1 1 0 FR47-like protein GNAT_acetyltran PF12746.7 gi|257388399|ref|YP_003178172.1| - 0.017 14.7 0.0 0.021 14.4 0.0 1.1 1 0 0 1 1 1 0 GNAT acetyltransferase EamA PF00892.20 gi|257388400|ref|YP_003178173.1| - 2.3e-38 131.5 30.1 3.2e-22 79.2 7.3 2.0 2 0 0 2 2 2 2 EamA-like transporter family MitoNEET_N PF10660.9 gi|257388400|ref|YP_003178173.1| - 0.12 12.4 5.8 0.34 11.0 0.4 3.3 3 0 0 3 3 3 0 Iron-containing outer mitochondrial membrane protein N-terminus TMEM234 PF10639.9 gi|257388400|ref|YP_003178173.1| - 3.3 7.8 11.4 0.16 12.0 2.0 2.8 3 0 0 3 3 3 0 Putative transmembrane family 234 SurE PF01975.17 gi|257388401|ref|YP_003178174.1| - 2.8e-45 154.5 0.5 3.6e-45 154.1 0.5 1.1 1 0 0 1 1 1 1 Survival protein SurE Methyltransf_23 PF13489.6 gi|257388402|ref|YP_003178175.1| - 8.9e-09 35.4 0.0 1.5e-08 34.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|257388402|ref|YP_003178175.1| - 6.8e-08 33.2 0.0 1.6e-07 32.0 0.0 1.7 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|257388402|ref|YP_003178175.1| - 4e-07 30.6 0.0 1.1e-06 29.2 0.0 1.8 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|257388402|ref|YP_003178175.1| - 1.2e-06 28.4 0.0 4e-06 26.7 0.0 1.8 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|257388402|ref|YP_003178175.1| - 3.8e-06 27.5 0.0 7.9e-06 26.5 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|257388402|ref|YP_003178175.1| - 0.00035 20.2 0.0 0.0006 19.5 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW Rsm22 PF09243.10 gi|257388402|ref|YP_003178175.1| - 0.00043 19.6 0.0 0.00061 19.1 0.0 1.2 1 0 0 1 1 1 1 Mitochondrial small ribosomal subunit Rsm22 NodS PF05401.11 gi|257388402|ref|YP_003178175.1| - 0.052 13.2 0.0 0.084 12.5 0.0 1.3 1 0 0 1 1 1 0 Nodulation protein S (NodS) MTS PF05175.14 gi|257388402|ref|YP_003178175.1| - 0.19 11.2 0.0 0.33 10.5 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain PDH PF02153.17 gi|257388403|ref|YP_003178176.1| - 9.9e-13 47.7 0.4 3.4e-12 45.9 0.4 1.7 1 1 0 1 1 1 1 Prephenate dehydrogenase F420_oxidored PF03807.17 gi|257388403|ref|YP_003178176.1| - 6.5e-07 29.9 0.2 4.8e-05 23.9 0.0 2.4 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent 3HCDH_N PF02737.18 gi|257388403|ref|YP_003178176.1| - 8.1e-05 22.6 0.4 0.00076 19.4 0.1 2.1 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|257388403|ref|YP_003178176.1| - 0.0031 17.7 0.0 0.014 15.6 0.0 2.0 2 1 0 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase ApbA PF02558.16 gi|257388403|ref|YP_003178176.1| - 0.0053 16.4 0.0 0.049 13.3 0.0 2.3 1 1 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Sacchrp_dh_NADP PF03435.18 gi|257388403|ref|YP_003178176.1| - 0.0067 16.7 0.1 0.024 14.9 0.0 2.0 2 0 0 2 2 2 1 Saccharopine dehydrogenase NADP binding domain GFO_IDH_MocA PF01408.22 gi|257388403|ref|YP_003178176.1| - 0.02 15.7 1.2 0.058 14.2 0.1 2.4 2 2 0 2 2 2 0 Oxidoreductase family, NAD-binding Rossmann fold NAD_binding_7 PF13241.6 gi|257388403|ref|YP_003178176.1| - 0.036 14.5 1.7 0.051 14.0 0.1 1.9 2 1 0 2 2 2 0 Putative NAD(P)-binding adh_short PF00106.25 gi|257388403|ref|YP_003178176.1| - 0.045 13.2 0.7 5.9 6.3 0.1 2.4 2 1 0 2 2 2 0 short chain dehydrogenase Rossmann-like PF10727.9 gi|257388403|ref|YP_003178176.1| - 0.057 13.3 0.7 0.057 13.3 0.7 2.1 3 0 0 3 3 3 0 Rossmann-like domain IMPDH PF00478.25 gi|257388404|ref|YP_003178177.1| - 3.5e-140 466.9 7.8 4e-140 466.7 7.8 1.0 1 0 0 1 1 1 1 IMP dehydrogenase / GMP reductase domain CBS PF00571.28 gi|257388404|ref|YP_003178177.1| - 1.7e-25 89.2 5.1 1.1e-11 45.0 0.2 2.8 2 0 0 2 2 2 2 CBS domain NMO PF03060.15 gi|257388404|ref|YP_003178177.1| - 5.1e-10 39.3 4.0 9.8e-07 28.5 2.1 2.4 2 0 0 2 2 2 2 Nitronate monooxygenase FMN_dh PF01070.18 gi|257388404|ref|YP_003178177.1| - 1.1e-08 34.5 4.4 2.3e-08 33.5 4.4 1.6 1 0 0 1 1 1 1 FMN-dependent dehydrogenase Glu_synthase PF01645.17 gi|257388404|ref|YP_003178177.1| - 2.2e-05 23.8 4.0 3.9e-05 22.9 4.0 1.3 1 0 0 1 1 1 1 Conserved region in glutamate synthase ThiG PF05690.14 gi|257388404|ref|YP_003178177.1| - 6e-05 22.5 1.3 6e-05 22.5 1.3 2.0 2 0 0 2 2 2 1 Thiazole biosynthesis protein ThiG DHO_dh PF01180.21 gi|257388404|ref|YP_003178177.1| - 0.0001 21.6 1.0 0.0002 20.7 1.0 1.4 1 0 0 1 1 1 1 Dihydroorotate dehydrogenase His_biosynth PF00977.21 gi|257388404|ref|YP_003178177.1| - 0.00038 20.0 2.6 0.0007 19.1 1.5 1.9 2 1 0 2 2 2 1 Histidine biosynthesis protein Dus PF01207.17 gi|257388404|ref|YP_003178177.1| - 0.0014 17.8 0.2 0.0033 16.5 0.2 1.6 1 0 0 1 1 1 1 Dihydrouridine synthase (Dus) G3P_antiterm PF04309.12 gi|257388404|ref|YP_003178177.1| - 0.034 13.6 0.1 0.07 12.5 0.1 1.4 1 0 0 1 1 1 0 Glycerol-3-phosphate responsive antiterminator NolB PF17398.2 gi|257388404|ref|YP_003178177.1| - 0.087 13.2 1.2 0.56 10.6 0.1 2.4 1 1 0 2 2 2 0 Nodulation protein NolB Zn-ribbon_8 PF09723.10 gi|257388406|ref|YP_003178179.1| - 0.0071 16.4 1.0 0.21 11.8 0.1 2.2 2 0 0 2 2 2 1 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|257388406|ref|YP_003178179.1| - 0.16 11.4 0.3 0.16 11.4 0.3 2.3 3 0 0 3 3 3 0 zinc-ribbon domain zf_Rg PF17915.1 gi|257388406|ref|YP_003178179.1| - 0.17 11.3 3.1 0.64 9.5 3.1 2.0 1 1 0 1 1 1 0 Reverse gyrase zinc finger zf-IS66 PF13005.7 gi|257388406|ref|YP_003178179.1| - 0.24 11.8 1.6 0.41 11.1 0.1 2.0 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 A2L_zn_ribbon PF08792.10 gi|257388406|ref|YP_003178179.1| - 1.7 8.5 5.3 1.4 8.7 0.2 2.4 3 0 0 3 3 3 0 A2L zinc ribbon domain zf-C2H2 PF00096.26 gi|257388406|ref|YP_003178179.1| - 4.1 8.1 4.5 9.1 7.0 0.2 2.2 2 0 0 2 2 2 0 Zinc finger, C2H2 type VAPB_antitox PF02697.14 gi|257388407|ref|YP_003178180.1| - 0.00019 22.1 0.2 0.00023 21.9 0.2 1.1 1 0 0 1 1 1 1 Putative antitoxin ParE_toxin PF05016.15 gi|257388408|ref|YP_003178181.1| - 1.6e-07 31.8 1.2 1.9e-07 31.6 1.2 1.1 1 0 0 1 1 1 1 ParE toxin of type II toxin-antitoxin system, parDE Metallophos_2 PF12850.7 gi|257388409|ref|YP_003178182.1| - 2.3e-14 53.9 0.2 7.3e-06 26.3 0.1 2.2 2 0 0 2 2 2 2 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|257388409|ref|YP_003178182.1| - 5.4e-11 43.4 0.6 2.7e-10 41.1 0.5 1.9 2 0 0 2 2 2 1 Calcineurin-like phosphoesterase GlgS PF08971.11 gi|257388409|ref|YP_003178182.1| - 0.025 14.6 0.0 0.07 13.2 0.0 1.7 1 0 0 1 1 1 0 Glycogen synthesis protein HalOD1 PF18545.1 gi|257388410|ref|YP_003178183.1| - 5e-15 55.5 0.3 6e-15 55.3 0.3 1.2 1 0 0 1 1 1 1 Halobacterial output domain 1 AhpC-TSA PF00578.21 gi|257388411|ref|YP_003178184.1| - 1.2e-29 102.7 0.0 1.4e-29 102.5 0.0 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|257388411|ref|YP_003178184.1| - 1e-23 83.7 0.0 1.2e-23 83.5 0.0 1.0 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.6 gi|257388411|ref|YP_003178184.1| - 0.00013 22.1 0.0 0.0035 17.5 0.0 2.0 1 1 0 2 2 2 1 AhpC/TSA antioxidant enzyme DUF899 PF05988.12 gi|257388411|ref|YP_003178184.1| - 0.001 18.7 0.0 0.0013 18.3 0.0 1.0 1 0 0 1 1 1 1 Bacterial protein of unknown function (DUF899) Pup PF05639.11 gi|257388412|ref|YP_003178185.1| - 0.023 15.6 0.9 0.023 15.6 0.9 3.0 3 0 0 3 3 3 0 Pup-like protein Prefoldin PF02996.17 gi|257388412|ref|YP_003178185.1| - 0.06 13.3 2.2 0.68 9.9 0.1 2.7 2 1 0 2 2 2 0 Prefoldin subunit DUF4407 PF14362.6 gi|257388412|ref|YP_003178185.1| - 0.085 12.2 6.8 0.1 11.9 6.8 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) Med9 PF07544.13 gi|257388412|ref|YP_003178185.1| - 0.11 12.6 0.1 0.35 11.0 0.1 1.8 1 1 1 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 kleA_kleC PF17383.2 gi|257388412|ref|YP_003178185.1| - 1 9.7 5.1 1.5 9.2 0.2 2.7 2 1 1 3 3 3 0 Uncharacterized KorC regulated protein A FUSC PF04632.12 gi|257388412|ref|YP_003178185.1| - 3.7 6.0 6.8 4.5 5.7 6.8 1.2 1 0 0 1 1 1 0 Fusaric acid resistance protein family IMS PF00817.20 gi|257388414|ref|YP_003178187.1| - 1.8e-40 138.4 0.0 2.6e-40 137.9 0.0 1.3 1 0 0 1 1 1 1 impB/mucB/samB family IMS_C PF11799.8 gi|257388414|ref|YP_003178187.1| - 7.7e-14 52.4 0.0 1.4e-13 51.6 0.0 1.4 1 0 0 1 1 1 1 impB/mucB/samB family C-terminal domain IMS_HHH PF11798.8 gi|257388414|ref|YP_003178187.1| - 1.9e-08 34.1 0.0 3.7e-08 33.2 0.0 1.5 1 0 0 1 1 1 1 IMS family HHH motif HHH_5 PF14520.6 gi|257388414|ref|YP_003178187.1| - 0.00043 20.8 0.0 0.0011 19.6 0.0 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix domain DNA_pol_lambd_f PF10391.9 gi|257388414|ref|YP_003178187.1| - 0.0033 17.2 0.0 0.0082 16.0 0.0 1.6 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda Cdd1 PF11731.8 gi|257388414|ref|YP_003178187.1| - 0.01 16.1 0.0 0.02 15.1 0.0 1.4 1 0 0 1 1 1 1 Pathogenicity locus DUF87 PF01935.17 gi|257388415|ref|YP_003178188.1| - 5.9e-13 49.4 2.3 4.2e-12 46.7 2.3 2.1 1 1 0 1 1 1 1 Helicase HerA, central domain DUF853 PF05872.12 gi|257388415|ref|YP_003178188.1| - 4.5e-05 22.3 0.0 0.0014 17.3 0.0 2.3 2 0 0 2 2 2 1 Bacterial protein of unknown function (DUF853) AAA_16 PF13191.6 gi|257388415|ref|YP_003178188.1| - 0.00034 21.0 2.1 0.0016 18.8 0.1 2.8 2 1 0 2 2 2 1 AAA ATPase domain CbiA PF01656.23 gi|257388415|ref|YP_003178188.1| - 0.00088 19.3 0.0 0.0018 18.3 0.0 1.7 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain HMMR_N PF15905.5 gi|257388415|ref|YP_003178188.1| - 0.001 18.7 3.9 0.0018 17.8 3.9 1.3 1 0 0 1 1 1 1 Hyaluronan mediated motility receptor N-terminal AAA PF00004.29 gi|257388415|ref|YP_003178188.1| - 0.0011 19.4 0.8 0.11 12.9 0.0 3.2 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) JIP_LZII PF16471.5 gi|257388415|ref|YP_003178188.1| - 0.0034 17.5 3.6 0.0034 17.5 3.6 1.9 2 0 0 2 2 1 1 JNK-interacting protein leucine zipper II Cep57_CLD PF14073.6 gi|257388415|ref|YP_003178188.1| - 0.0059 16.6 2.3 0.012 15.6 2.3 1.5 1 0 0 1 1 1 1 Centrosome localisation domain of Cep57 APS_kinase PF01583.20 gi|257388415|ref|YP_003178188.1| - 0.0089 15.9 0.1 0.04 13.8 0.0 2.1 3 0 0 3 3 2 1 Adenylylsulphate kinase UPF0242 PF06785.11 gi|257388415|ref|YP_003178188.1| - 0.014 15.5 0.9 0.03 14.4 0.9 1.5 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus AAA_10 PF12846.7 gi|257388415|ref|YP_003178188.1| - 0.019 13.9 0.1 0.18 10.7 0.0 2.2 1 1 1 2 2 2 0 AAA-like domain AAA_18 PF13238.6 gi|257388415|ref|YP_003178188.1| - 0.021 15.4 0.5 0.058 13.9 0.0 2.0 2 0 0 2 2 1 0 AAA domain CENP-H PF05837.12 gi|257388415|ref|YP_003178188.1| - 0.022 15.2 1.2 0.078 13.4 1.2 1.9 1 0 0 1 1 1 0 Centromere protein H (CENP-H) Spc7 PF08317.11 gi|257388415|ref|YP_003178188.1| - 0.032 13.1 2.5 0.059 12.2 2.5 1.3 1 0 0 1 1 1 0 Spc7 kinetochore protein KIP1 PF07765.12 gi|257388415|ref|YP_003178188.1| - 0.035 14.2 1.1 0.86 9.8 0.0 3.0 3 0 0 3 3 2 0 KIP1-like protein DUF1664 PF07889.12 gi|257388415|ref|YP_003178188.1| - 0.04 14.0 0.3 0.085 12.9 0.3 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) Med9 PF07544.13 gi|257388415|ref|YP_003178188.1| - 0.041 14.0 1.5 0.096 12.8 1.5 1.6 1 0 0 1 1 1 0 RNA polymerase II transcription mediator complex subunit 9 PEARLI-4 PF05278.12 gi|257388415|ref|YP_003178188.1| - 0.046 13.3 3.2 0.081 12.5 3.2 1.3 1 0 0 1 1 1 0 Arabidopsis phospholipase-like protein (PEARLI 4) DUF3450 PF11932.8 gi|257388415|ref|YP_003178188.1| - 0.061 12.6 4.9 0.12 11.7 4.9 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3450) DLP_helical PF18709.1 gi|257388415|ref|YP_003178188.1| - 0.084 12.1 3.5 0.11 11.7 0.7 2.0 2 0 0 2 2 2 0 Dynamin-like helical domain DUF4407 PF14362.6 gi|257388415|ref|YP_003178188.1| - 0.093 12.1 3.2 0.2 11.0 3.2 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) DUF1151 PF06625.11 gi|257388415|ref|YP_003178188.1| - 0.1 12.6 4.9 0.028 14.4 1.4 1.8 2 0 0 2 2 1 0 Protein of unknown function (DUF1151) Laminin_II PF06009.12 gi|257388415|ref|YP_003178188.1| - 0.15 12.1 0.7 0.41 10.7 0.7 1.7 1 0 0 1 1 1 0 Laminin Domain II AAA_13 PF13166.6 gi|257388415|ref|YP_003178188.1| - 0.17 10.5 1.2 0.28 9.8 1.2 1.2 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|257388415|ref|YP_003178188.1| - 0.19 12.3 0.9 6.7 7.2 0.0 2.4 2 0 0 2 2 2 0 ABC transporter AAA_31 PF13614.6 gi|257388415|ref|YP_003178188.1| - 0.2 11.6 0.0 0.35 10.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain ING PF12998.7 gi|257388415|ref|YP_003178188.1| - 0.27 11.8 2.2 2.2 8.9 1.4 2.5 2 0 0 2 2 2 0 Inhibitor of growth proteins N-terminal histone-binding TMF_TATA_bd PF12325.8 gi|257388415|ref|YP_003178188.1| - 0.34 11.1 10.4 1.2 9.4 6.6 2.5 2 0 0 2 2 2 0 TATA element modulatory factor 1 TATA binding FTA4 PF13093.6 gi|257388415|ref|YP_003178188.1| - 0.46 10.3 2.7 0.15 11.9 0.2 1.6 2 0 0 2 2 1 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 DUF724 PF05266.14 gi|257388415|ref|YP_003178188.1| - 0.72 9.7 3.5 1.3 8.8 3.5 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF724) Prefoldin_2 PF01920.20 gi|257388415|ref|YP_003178188.1| - 0.94 9.5 6.2 0.29 11.1 2.6 1.9 2 0 0 2 2 2 0 Prefoldin subunit FlaC_arch PF05377.11 gi|257388415|ref|YP_003178188.1| - 2.4 8.6 4.1 7.5 7.0 0.6 2.6 2 0 0 2 2 2 0 Flagella accessory protein C (FlaC) CLZ PF16526.5 gi|257388415|ref|YP_003178188.1| - 4.4 7.7 8.6 20 5.6 0.3 2.6 2 0 0 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Pox_A_type_inc PF04508.12 gi|257388415|ref|YP_003178188.1| - 9.4 6.3 12.1 0.052 13.4 1.5 2.6 2 1 1 3 3 2 0 Viral A-type inclusion protein repeat TIM PF00121.18 gi|257388416|ref|YP_003178189.1| - 2.6e-08 33.5 0.1 1.2e-07 31.4 0.0 1.8 1 1 1 2 2 2 1 Triosephosphate isomerase ThiG PF05690.14 gi|257388416|ref|YP_003178189.1| - 8.4e-05 22.0 5.3 0.00039 19.8 5.3 2.1 1 1 0 1 1 1 1 Thiazole biosynthesis protein ThiG FMN_dh PF01070.18 gi|257388416|ref|YP_003178189.1| - 0.0018 17.4 2.3 0.0018 17.4 2.3 2.2 2 1 1 3 3 3 1 FMN-dependent dehydrogenase IGPS PF00218.21 gi|257388416|ref|YP_003178189.1| - 0.0057 15.9 0.1 0.025 13.8 0.1 2.0 1 1 0 1 1 1 1 Indole-3-glycerol phosphate synthase ComA PF02679.15 gi|257388416|ref|YP_003178189.1| - 0.086 12.3 0.0 0.12 11.9 0.0 1.2 1 0 0 1 1 1 0 (2R)-phospho-3-sulfolactate synthase (ComA) Glu_synthase PF01645.17 gi|257388416|ref|YP_003178189.1| - 0.15 11.1 1.9 1.5 7.9 0.4 2.1 1 1 1 2 2 2 0 Conserved region in glutamate synthase NMO PF03060.15 gi|257388416|ref|YP_003178189.1| - 0.56 9.5 9.1 0.063 12.7 5.1 1.4 2 0 0 2 2 2 0 Nitronate monooxygenase Response_reg PF00072.24 gi|257388417|ref|YP_003178190.1| - 1.2e-19 70.5 0.5 2e-19 69.8 0.5 1.3 1 0 0 1 1 1 1 Response regulator receiver domain HalX PF08663.10 gi|257388417|ref|YP_003178190.1| - 9.6e-17 61.1 5.7 9.6e-17 61.1 5.7 1.8 2 0 0 2 2 2 1 HalX domain Lipase_GDSL_2 PF13472.6 gi|257388417|ref|YP_003178190.1| - 0.0013 19.2 0.1 0.002 18.5 0.1 1.4 1 1 0 1 1 1 1 GDSL-like Lipase/Acylhydrolase family IF-2B PF01008.17 gi|257388417|ref|YP_003178190.1| - 0.0054 16.0 0.3 0.0098 15.1 0.0 1.5 2 0 0 2 2 2 1 Initiation factor 2 subunit family DUF4140 PF13600.6 gi|257388417|ref|YP_003178190.1| - 0.059 13.8 2.8 0.099 13.1 2.1 1.7 1 1 1 2 2 2 0 N-terminal domain of unknown function (DUF4140) DUF465 PF04325.13 gi|257388417|ref|YP_003178190.1| - 0.089 12.8 1.6 0.48 10.5 1.6 2.2 1 0 0 1 1 1 0 Protein of unknown function (DUF465) LemA PF04011.12 gi|257388417|ref|YP_003178190.1| - 0.11 12.4 0.3 0.18 11.6 0.3 1.4 1 0 0 1 1 1 0 LemA family NPV_P10 PF05531.12 gi|257388417|ref|YP_003178190.1| - 0.19 12.2 1.4 2.3 8.8 1.0 2.5 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein HTH_19 PF12844.7 gi|257388418|ref|YP_003178191.1| - 1.7e-10 40.7 0.1 2.7e-10 40.1 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|257388418|ref|YP_003178191.1| - 5.2e-10 39.2 0.2 7.5e-10 38.7 0.2 1.2 1 0 0 1 1 1 1 Helix-turn-helix HTH_31 PF13560.6 gi|257388418|ref|YP_003178191.1| - 8.4e-10 38.9 0.4 1.3e-09 38.2 0.4 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|257388418|ref|YP_003178191.1| - 7.7e-08 32.1 0.7 1.2e-07 31.5 0.7 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.6 gi|257388418|ref|YP_003178191.1| - 0.023 14.6 0.0 0.035 14.1 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4 PF04545.16 gi|257388418|ref|YP_003178191.1| - 0.025 14.1 0.3 0.04 13.4 0.3 1.4 1 0 0 1 1 1 0 Sigma-70, region 4 Serglycin PF04360.12 gi|257388418|ref|YP_003178191.1| - 0.078 12.9 3.7 0.14 12.1 3.7 1.5 1 0 0 1 1 1 0 Serglycin HTH_26 PF13443.6 gi|257388418|ref|YP_003178191.1| - 0.085 13.3 0.1 0.17 12.4 0.1 1.6 1 1 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain PI3K_1B_p101 PF10486.9 gi|257388418|ref|YP_003178191.1| - 0.12 10.1 5.6 6.1 4.5 5.7 2.0 2 0 0 2 2 2 0 Phosphoinositide 3-kinase gamma adapter protein p101 subunit RAP1 PF07218.11 gi|257388418|ref|YP_003178191.1| - 1.2 7.3 4.4 1.3 7.2 4.4 1.1 1 0 0 1 1 1 0 Rhoptry-associated protein 1 (RAP-1) CDP-OH_P_transf PF01066.21 gi|257388419|ref|YP_003178192.1| - 3e-07 31.1 0.9 3e-07 31.1 0.9 2.5 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase DUF4051 PF13260.6 gi|257388419|ref|YP_003178192.1| - 0.062 13.0 1.7 0.13 12.0 1.7 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF4051) AAA_18 PF13238.6 gi|257388420|ref|YP_003178193.1| - 8.7e-22 78.1 0.1 1.3e-21 77.5 0.1 1.3 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|257388420|ref|YP_003178193.1| - 1.3e-08 35.1 0.7 0.00044 20.4 0.0 2.2 1 1 0 2 2 2 2 AAA domain AAA_17 PF13207.6 gi|257388420|ref|YP_003178193.1| - 2.4e-07 31.3 0.7 6.6e-05 23.3 0.5 2.4 1 1 0 1 1 1 1 AAA domain AAA_28 PF13521.6 gi|257388420|ref|YP_003178193.1| - 6.5e-06 26.5 2.1 3.3e-05 24.2 0.1 2.1 1 1 1 2 2 2 1 AAA domain dNK PF01712.19 gi|257388420|ref|YP_003178193.1| - 0.00011 22.2 0.2 0.36 10.7 0.0 2.2 1 1 0 2 2 2 2 Deoxynucleoside kinase AAA_22 PF13401.6 gi|257388420|ref|YP_003178193.1| - 0.00036 20.8 0.0 0.00052 20.3 0.0 1.4 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|257388420|ref|YP_003178193.1| - 0.00092 19.6 0.6 0.003 18.0 0.6 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NTPase_1 PF03266.15 gi|257388420|ref|YP_003178193.1| - 0.003 17.5 0.3 0.01 15.8 0.1 1.8 2 0 0 2 2 2 1 NTPase MeaB PF03308.16 gi|257388420|ref|YP_003178193.1| - 0.0031 16.5 0.2 0.0057 15.7 0.1 1.5 2 0 0 2 2 2 1 Methylmalonyl Co-A mutase-associated GTPase MeaB ADK PF00406.22 gi|257388420|ref|YP_003178193.1| - 0.0038 17.4 0.3 0.21 11.7 0.0 2.2 2 0 0 2 2 2 1 Adenylate kinase CoaE PF01121.20 gi|257388420|ref|YP_003178193.1| - 0.0076 15.9 0.2 1.7 8.3 0.0 2.2 2 0 0 2 2 2 1 Dephospho-CoA kinase AAA_24 PF13479.6 gi|257388420|ref|YP_003178193.1| - 0.0082 15.9 0.0 0.015 15.0 0.0 1.6 1 1 0 1 1 1 1 AAA domain SKI PF01202.22 gi|257388420|ref|YP_003178193.1| - 0.012 15.7 0.3 2.1 8.4 0.2 2.1 2 0 0 2 2 2 0 Shikimate kinase AAA_16 PF13191.6 gi|257388420|ref|YP_003178193.1| - 0.016 15.6 4.6 0.046 14.1 4.6 1.7 1 1 0 1 1 1 0 AAA ATPase domain Thymidylate_kin PF02223.17 gi|257388420|ref|YP_003178193.1| - 0.021 14.5 0.3 5.2 6.7 0.0 2.1 2 0 0 2 2 2 0 Thymidylate kinase Trns_repr_metal PF02583.17 gi|257388420|ref|YP_003178193.1| - 0.036 14.4 0.4 0.32 11.4 0.0 2.1 1 1 1 2 2 2 0 Metal-sensitive transcriptional repressor AAA_19 PF13245.6 gi|257388420|ref|YP_003178193.1| - 0.05 13.9 0.3 0.1 12.9 0.1 1.6 2 0 0 2 2 2 0 AAA domain KTI12 PF08433.10 gi|257388420|ref|YP_003178193.1| - 0.054 12.9 0.0 0.082 12.3 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 Ploopntkinase3 PF18751.1 gi|257388420|ref|YP_003178193.1| - 0.06 13.3 0.0 11 5.9 0.0 2.2 1 1 1 2 2 2 0 P-loop Nucleotide Kinase3 RNA_helicase PF00910.22 gi|257388420|ref|YP_003178193.1| - 0.069 13.6 0.0 0.13 12.7 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_5 PF07728.14 gi|257388420|ref|YP_003178193.1| - 0.069 13.1 0.1 0.49 10.4 0.0 2.0 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) NACHT PF05729.12 gi|257388420|ref|YP_003178193.1| - 0.071 13.0 0.0 0.12 12.3 0.0 1.3 1 0 0 1 1 1 0 NACHT domain GTP_EFTU PF00009.27 gi|257388420|ref|YP_003178193.1| - 0.11 12.0 0.3 0.21 11.1 0.1 1.6 2 0 0 2 2 2 0 Elongation factor Tu GTP binding domain Viral_helicase1 PF01443.18 gi|257388420|ref|YP_003178193.1| - 0.11 12.2 0.1 0.21 11.3 0.0 1.5 1 1 0 1 1 1 0 Viral (Superfamily 1) RNA helicase DUF2075 PF09848.9 gi|257388420|ref|YP_003178193.1| - 0.12 11.6 0.0 0.18 11.0 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Aminotran_1_2 PF00155.21 gi|257388421|ref|YP_003178194.1| - 1.2e-64 218.8 0.0 1.3e-64 218.6 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Alliinase_C PF04864.13 gi|257388421|ref|YP_003178194.1| - 0.00066 18.6 0.0 0.00098 18.1 0.0 1.2 1 0 0 1 1 1 1 Allinase CheX PF13690.6 gi|257388422|ref|YP_003178195.1| - 2.4e-06 27.6 0.0 4.2e-06 26.8 0.0 1.4 1 0 0 1 1 1 1 Chemotaxis phosphatase CheX CheC PF04509.12 gi|257388422|ref|YP_003178195.1| - 3.6e-06 26.8 0.0 9.1e-06 25.5 0.0 1.7 1 0 0 1 1 1 1 CheC-like family CopD PF05425.13 gi|257388423|ref|YP_003178196.1| - 0.0002 21.7 5.0 0.0002 21.7 5.0 2.2 2 1 0 2 2 2 1 Copper resistance protein D GMC_oxred_C PF05199.13 gi|257388424|ref|YP_003178197.1| - 2.9e-24 86.2 1.0 1.1e-23 84.4 1.0 2.0 1 1 0 1 1 1 1 GMC oxidoreductase GMC_oxred_N PF00732.19 gi|257388424|ref|YP_003178197.1| - 5.9e-12 45.6 0.0 9.1e-12 44.9 0.0 1.3 1 0 0 1 1 1 1 GMC oxidoreductase FAD_binding_2 PF00890.24 gi|257388424|ref|YP_003178197.1| - 3.4e-09 36.3 0.3 0.001 18.2 0.2 2.2 2 0 0 2 2 2 2 FAD binding domain DAO PF01266.24 gi|257388424|ref|YP_003178197.1| - 2.1e-08 34.2 0.8 0.0023 17.6 0.1 2.7 3 0 0 3 3 3 2 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|257388424|ref|YP_003178197.1| - 6.8e-07 29.4 0.0 2.4e-06 27.7 0.0 2.0 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|257388424|ref|YP_003178197.1| - 0.00015 20.6 0.2 0.0033 16.2 0.3 2.0 2 0 0 2 2 2 1 HI0933-like protein ApbA PF02558.16 gi|257388424|ref|YP_003178197.1| - 0.00022 20.9 0.1 0.0064 16.1 0.1 2.3 2 0 0 2 2 2 1 Ketopantoate reductase PanE/ApbA Lycopene_cycl PF05834.12 gi|257388424|ref|YP_003178197.1| - 0.0004 19.5 0.1 0.00066 18.8 0.1 1.3 1 0 0 1 1 1 1 Lycopene cyclase protein Pyr_redox_2 PF07992.14 gi|257388424|ref|YP_003178197.1| - 0.00088 18.6 0.1 0.002 17.4 0.0 1.6 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|257388424|ref|YP_003178197.1| - 0.001 18.4 0.1 0.001 18.4 0.1 1.6 2 0 0 2 2 2 1 FAD binding domain Fer4_7 PF12838.7 gi|257388424|ref|YP_003178197.1| - 0.0039 17.7 1.1 0.0084 16.7 1.1 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Pyr_redox_3 PF13738.6 gi|257388424|ref|YP_003178197.1| - 0.015 14.6 0.0 0.027 13.7 0.0 1.4 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Fer4_10 PF13237.6 gi|257388424|ref|YP_003178197.1| - 0.053 13.6 0.1 0.093 12.9 0.1 1.4 1 0 0 1 1 1 0 4Fe-4S dicluster domain Amino_oxidase PF01593.24 gi|257388424|ref|YP_003178197.1| - 0.066 12.5 0.1 0.11 11.8 0.1 1.3 1 0 0 1 1 1 0 Flavin containing amine oxidoreductase 3HCDH_N PF02737.18 gi|257388424|ref|YP_003178197.1| - 0.09 12.7 0.0 0.14 12.1 0.0 1.2 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Pyr_redox PF00070.27 gi|257388424|ref|YP_003178197.1| - 0.11 13.1 0.0 0.29 11.7 0.0 1.8 2 0 0 2 2 1 0 Pyridine nucleotide-disulphide oxidoreductase Fer4 PF00037.27 gi|257388424|ref|YP_003178197.1| - 0.11 12.3 0.5 0.22 11.4 0.5 1.5 1 0 0 1 1 1 0 4Fe-4S binding domain TrkA_N PF02254.18 gi|257388424|ref|YP_003178197.1| - 0.2 11.9 0.0 0.84 9.9 0.0 2.0 2 0 0 2 2 2 0 TrkA-N domain Fer4_3 PF12798.7 gi|257388424|ref|YP_003178197.1| - 1.1 10.4 3.1 2.2 9.4 3.1 1.5 1 0 0 1 1 1 0 4Fe-4S binding domain HTH_20 PF12840.7 gi|257388425|ref|YP_003178198.1| - 5.5e-13 48.8 0.1 8.5e-13 48.2 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|257388425|ref|YP_003178198.1| - 9.8e-09 34.6 0.0 1.4e-08 34.2 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|257388425|ref|YP_003178198.1| - 7e-08 32.3 0.0 1.1e-07 31.7 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_5 PF01022.20 gi|257388425|ref|YP_003178198.1| - 9.2e-08 31.8 0.0 2.6e-07 30.4 0.0 1.7 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.7 gi|257388425|ref|YP_003178198.1| - 1.7e-07 31.0 0.1 3.9e-07 29.9 0.1 1.6 2 0 0 2 2 2 1 MarR family TFIIE_alpha PF02002.17 gi|257388425|ref|YP_003178198.1| - 4.6e-06 26.4 0.0 5.8e-06 26.1 0.0 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_27 PF13463.6 gi|257388425|ref|YP_003178198.1| - 5.9e-06 26.7 0.1 9.7e-06 26.0 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_IclR PF09339.10 gi|257388425|ref|YP_003178198.1| - 1e-05 25.2 0.1 2e-05 24.3 0.1 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain TrmB PF01978.19 gi|257388425|ref|YP_003178198.1| - 0.00015 21.6 0.0 0.00024 20.9 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB B-block_TFIIIC PF04182.12 gi|257388425|ref|YP_003178198.1| - 0.003 17.7 0.0 0.0044 17.1 0.0 1.4 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_11 PF08279.12 gi|257388425|ref|YP_003178198.1| - 0.0038 17.1 0.0 0.0062 16.5 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_30 PF13556.6 gi|257388425|ref|YP_003178198.1| - 0.0099 15.7 0.1 0.019 14.7 0.1 1.4 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain RP-C PF03428.13 gi|257388425|ref|YP_003178198.1| - 0.013 15.2 0.0 0.023 14.4 0.0 1.3 1 0 0 1 1 1 0 Replication protein C N-terminal domain Dimerisation2 PF16864.5 gi|257388425|ref|YP_003178198.1| - 0.019 14.9 0.0 0.023 14.7 0.0 1.2 1 0 0 1 1 1 0 Dimerisation domain HTH_10 PF04967.12 gi|257388425|ref|YP_003178198.1| - 0.043 13.6 0.1 0.12 12.2 0.0 1.7 1 1 1 2 2 2 0 HTH DNA binding domain HTH_34 PF13601.6 gi|257388425|ref|YP_003178198.1| - 0.055 13.7 0.0 0.069 13.3 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF2250 PF10007.9 gi|257388425|ref|YP_003178198.1| - 0.061 13.4 0.2 0.86 9.8 0.2 2.0 1 1 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) FeoC PF09012.10 gi|257388425|ref|YP_003178198.1| - 0.098 12.7 0.0 0.28 11.3 0.0 1.7 2 0 0 2 2 2 0 FeoC like transcriptional regulator SH3_14 PF18343.1 gi|257388426|ref|YP_003178199.1| - 0.019 15.1 0.0 0.055 13.6 0.0 1.8 2 1 0 2 2 2 0 Dda helicase SH3 domain FAA_hydrolase PF01557.18 gi|257388427|ref|YP_003178200.1| - 1.1e-65 221.3 0.0 1.4e-65 221.1 0.0 1.1 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family DUF2437 PF10370.9 gi|257388427|ref|YP_003178200.1| - 0.022 15.6 0.2 0.062 14.2 0.2 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF2437) DUF21 PF01595.20 gi|257388428|ref|YP_003178201.1| - 1.1e-30 106.7 0.2 1.5e-30 106.2 0.2 1.2 1 0 0 1 1 1 1 Cyclin M transmembrane N-terminal domain CBS PF00571.28 gi|257388428|ref|YP_003178201.1| - 7e-10 39.2 0.3 5.3e-09 36.4 0.1 2.3 2 0 0 2 2 2 1 CBS domain HisKA_4TM PF16926.5 gi|257388429|ref|YP_003178202.1| - 1.5e-30 105.9 2.2 2.3e-30 105.3 2.2 1.3 1 0 0 1 1 1 1 Archaeal 4TM region of histidine kinase HATPase_c PF02518.26 gi|257388429|ref|YP_003178202.1| - 1.5e-17 64.1 0.1 2.7e-17 63.3 0.1 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|257388429|ref|YP_003178202.1| - 0.00013 21.9 0.2 0.00028 20.8 0.1 1.5 1 1 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.6 gi|257388429|ref|YP_003178202.1| - 0.00016 21.5 0.0 0.00029 20.7 0.0 1.4 1 0 0 1 1 1 1 GHKL domain HATPase_c_3 PF13589.6 gi|257388429|ref|YP_003178202.1| - 0.00052 19.9 0.0 0.0011 18.7 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HisKA PF00512.25 gi|257388429|ref|YP_003178202.1| - 0.0011 19.0 0.1 0.0032 17.5 0.0 1.8 1 1 1 2 2 2 1 His Kinase A (phospho-acceptor) domain NPV_P10 PF05531.12 gi|257388429|ref|YP_003178202.1| - 0.022 15.2 0.4 0.21 12.0 0.1 2.2 1 1 1 2 2 2 0 Nucleopolyhedrovirus P10 protein SnoaL_4 PF13577.6 gi|257388429|ref|YP_003178202.1| - 0.039 14.1 0.3 0.1 12.8 0.3 1.7 1 0 0 1 1 1 0 SnoaL-like domain SPOB_a PF14689.6 gi|257388429|ref|YP_003178202.1| - 0.13 12.0 0.0 0.23 11.2 0.0 1.4 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain Acetyltransf_10 PF13673.7 gi|257388430|ref|YP_003178203.1| - 3.5e-21 75.5 0.0 4e-21 75.3 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|257388430|ref|YP_003178203.1| - 8.4e-14 51.8 0.0 1e-13 51.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|257388430|ref|YP_003178203.1| - 2.2e-09 37.6 0.0 3.3e-09 37.0 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|257388430|ref|YP_003178203.1| - 0.0049 16.8 0.0 0.0078 16.2 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|257388430|ref|YP_003178203.1| - 0.0064 16.6 0.1 0.029 14.5 0.0 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain PanZ PF12568.8 gi|257388430|ref|YP_003178203.1| - 0.061 13.0 0.2 0.077 12.7 0.2 1.2 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain, PanZ Acetyltransf_5 PF13444.6 gi|257388430|ref|YP_003178203.1| - 0.12 13.1 0.8 0.29 11.9 0.4 1.8 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain TrkA_N PF02254.18 gi|257388431|ref|YP_003178204.1| - 2.1e-20 73.1 1.6 2.1e-20 73.1 1.6 2.2 2 0 0 2 2 2 1 TrkA-N domain DHH PF01368.20 gi|257388431|ref|YP_003178204.1| - 2e-10 40.8 3.5 9e-10 38.7 0.7 2.4 2 0 0 2 2 2 1 DHH family F420_oxidored PF03807.17 gi|257388431|ref|YP_003178204.1| - 7.4e-07 29.7 0.5 2.9e-06 27.8 0.1 2.3 2 1 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent Sacchrp_dh_NADP PF03435.18 gi|257388431|ref|YP_003178204.1| - 1.1e-06 28.9 3.0 1.3e-06 28.6 0.2 2.6 3 1 0 3 3 3 1 Saccharopine dehydrogenase NADP binding domain ApbA PF02558.16 gi|257388431|ref|YP_003178204.1| - 3.2e-06 26.9 0.0 1.5e-05 24.7 0.0 2.2 1 1 1 2 2 2 1 Ketopantoate reductase PanE/ApbA DHHA1 PF02272.19 gi|257388431|ref|YP_003178204.1| - 3.3e-06 27.6 0.2 3.9e-05 24.1 0.0 2.5 2 1 0 2 2 2 1 DHHA1 domain Shikimate_DH PF01488.20 gi|257388431|ref|YP_003178204.1| - 7.3e-06 26.1 0.1 2e-05 24.7 0.1 1.7 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.6 gi|257388431|ref|YP_003178204.1| - 7.6e-05 23.1 1.9 0.00016 22.0 0.7 2.2 1 1 1 2 2 2 1 Putative NAD(P)-binding IlvN PF07991.12 gi|257388431|ref|YP_003178204.1| - 0.00021 20.9 2.0 0.00034 20.2 0.2 2.0 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain Epimerase PF01370.21 gi|257388431|ref|YP_003178204.1| - 0.00047 19.7 0.7 0.0047 16.4 0.1 2.2 2 0 0 2 2 2 1 NAD dependent epimerase/dehydratase family NAD_binding_2 PF03446.15 gi|257388431|ref|YP_003178204.1| - 0.00087 19.5 0.0 0.002 18.3 0.0 1.7 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase 3HCDH_N PF02737.18 gi|257388431|ref|YP_003178204.1| - 0.0023 17.9 0.1 0.0065 16.4 0.1 1.8 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_Gly3P_dh_N PF01210.23 gi|257388431|ref|YP_003178204.1| - 0.0031 17.5 0.0 0.007 16.3 0.0 1.6 1 0 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus UDPG_MGDP_dh_N PF03721.14 gi|257388431|ref|YP_003178204.1| - 0.0051 16.4 0.2 0.027 14.0 0.0 2.2 2 1 0 2 2 2 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AlaDh_PNT_C PF01262.21 gi|257388431|ref|YP_003178204.1| - 0.007 15.7 0.5 0.014 14.7 0.5 1.5 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain adh_short PF00106.25 gi|257388431|ref|YP_003178204.1| - 0.016 14.6 0.5 0.066 12.7 0.1 2.1 2 1 0 2 2 2 0 short chain dehydrogenase 2-Hacid_dh_C PF02826.19 gi|257388431|ref|YP_003178204.1| - 0.023 14.0 0.0 0.053 12.9 0.0 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain adh_short_C2 PF13561.6 gi|257388431|ref|YP_003178204.1| - 0.027 14.0 2.7 0.21 11.1 0.9 2.4 2 0 0 2 2 2 0 Enoyl-(Acyl carrier protein) reductase Ldh_1_N PF00056.23 gi|257388431|ref|YP_003178204.1| - 0.054 13.6 0.9 0.11 12.6 0.3 1.8 2 0 0 2 2 2 0 lactate/malate dehydrogenase, NAD binding domain PRC PF05239.16 gi|257388432|ref|YP_003178205.1| - 8.3e-13 48.2 0.4 1e-12 47.9 0.4 1.1 1 0 0 1 1 1 1 PRC-barrel domain DUF835 PF05763.12 gi|257388433|ref|YP_003178206.1| - 0.15 11.8 0.0 0.17 11.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF835) YdjM PF04307.14 gi|257388434|ref|YP_003178207.1| - 4.4e-08 32.6 1.9 5.4e-08 32.3 1.9 1.3 1 0 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase PALP PF00291.25 gi|257388435|ref|YP_003178208.1| - 7.7e-72 242.2 5.4 9.4e-72 241.9 5.4 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACP_syn_III_C PF08541.10 gi|257388435|ref|YP_003178208.1| - 0.37 11.0 2.4 0.33 11.1 0.2 2.0 3 0 0 3 3 3 0 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CDP-OH_P_transf PF01066.21 gi|257388436|ref|YP_003178209.1| - 1.7e-09 38.3 2.8 1.7e-09 38.3 2.8 2.6 2 1 0 2 2 2 1 CDP-alcohol phosphatidyltransferase NUDIX PF00293.28 gi|257388438|ref|YP_003178211.1| - 6.8e-15 55.3 1.3 9.8e-15 54.7 1.3 1.3 1 0 0 1 1 1 1 NUDIX domain DUF1918 PF08940.11 gi|257388439|ref|YP_003178212.1| - 0.0077 15.8 0.1 0.0085 15.7 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF1918) LBR_tudor PF09465.10 gi|257388439|ref|YP_003178212.1| - 0.082 12.7 0.1 0.16 11.8 0.0 1.6 1 1 0 1 1 1 0 Lamin-B receptor of TUDOR domain RNA_binding PF01877.17 gi|257388440|ref|YP_003178213.1| - 2.3e-31 108.5 0.1 2.8e-31 108.3 0.1 1.1 1 0 0 1 1 1 1 RNA binding RNase_P_p30 PF01876.16 gi|257388441|ref|YP_003178214.1| - 7.5e-40 136.7 0.0 9.3e-40 136.4 0.0 1.0 1 0 0 1 1 1 1 RNase P subunit p30 OTCace_N PF02729.21 gi|257388441|ref|YP_003178214.1| - 0.12 12.4 0.1 0.63 10.1 0.0 2.1 2 0 0 2 2 2 0 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Methyltransf_25 PF13649.6 gi|257388443|ref|YP_003178216.1| - 1.8e-18 67.1 0.1 3.4e-18 66.1 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|257388443|ref|YP_003178216.1| - 5.1e-15 55.6 0.0 9.5e-15 54.7 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|257388443|ref|YP_003178216.1| - 7.2e-15 55.4 0.1 1.6e-14 54.3 0.0 1.6 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|257388443|ref|YP_003178216.1| - 4.8e-11 43.3 0.0 8.9e-11 42.4 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|257388443|ref|YP_003178216.1| - 4.9e-10 39.5 0.0 9.8e-10 38.5 0.0 1.5 2 0 0 2 2 2 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|257388443|ref|YP_003178216.1| - 5.8e-09 35.6 0.1 1.1e-08 34.7 0.0 1.4 2 0 0 2 2 2 1 ubiE/COQ5 methyltransferase family MTS PF05175.14 gi|257388443|ref|YP_003178216.1| - 6.7e-07 29.0 0.0 1e-06 28.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase small domain PrmA PF06325.13 gi|257388443|ref|YP_003178216.1| - 0.0032 16.9 0.1 0.0044 16.5 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_32 PF13679.6 gi|257388443|ref|YP_003178216.1| - 0.0068 16.4 0.0 0.009 16.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain RrnaAD PF00398.20 gi|257388443|ref|YP_003178216.1| - 0.015 14.4 0.0 0.022 13.8 0.0 1.2 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_18 PF12847.7 gi|257388443|ref|YP_003178216.1| - 0.015 15.2 0.0 0.023 14.6 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain DREV PF05219.12 gi|257388443|ref|YP_003178216.1| - 0.021 13.9 0.0 0.026 13.6 0.0 1.2 1 0 0 1 1 1 0 DREV methyltransferase tRNA_U5-meth_tr PF05958.11 gi|257388443|ref|YP_003178216.1| - 0.048 12.7 0.0 0.068 12.1 0.0 1.2 1 0 0 1 1 1 0 tRNA (Uracil-5-)-methyltransferase CMAS PF02353.20 gi|257388443|ref|YP_003178216.1| - 0.068 12.5 0.0 0.085 12.1 0.0 1.2 1 0 0 1 1 1 0 Mycolic acid cyclopropane synthetase PCMT PF01135.19 gi|257388443|ref|YP_003178216.1| - 0.12 12.1 0.0 0.18 11.5 0.0 1.2 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_4 PF02390.17 gi|257388443|ref|YP_003178216.1| - 0.16 11.4 0.0 0.24 10.8 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase RNase_P_Rpp14 PF01900.19 gi|257388444|ref|YP_003178217.1| - 4.8e-18 65.3 0.0 7e-18 64.8 0.0 1.2 1 0 0 1 1 1 1 Rpp14/Pop5 family Proteasome PF00227.26 gi|257388445|ref|YP_003178218.1| - 1.5e-55 187.7 0.0 1.8e-55 187.4 0.0 1.1 1 0 0 1 1 1 1 Proteasome subunit Proteasome_A_N PF10584.9 gi|257388445|ref|YP_003178218.1| - 9.2e-13 47.6 0.1 1.5e-12 47.0 0.1 1.3 1 0 0 1 1 1 1 Proteasome subunit A N-terminal signature SBDS PF01172.18 gi|257388446|ref|YP_003178219.1| - 3.1e-19 68.8 0.0 4.7e-19 68.3 0.0 1.3 1 0 0 1 1 1 1 Shwachman-Bodian-Diamond syndrome (SBDS) protein SBDS_C PF09377.10 gi|257388446|ref|YP_003178219.1| - 1e-16 61.0 0.0 1.9e-16 60.1 0.0 1.4 1 0 0 1 1 1 1 SBDS protein C-terminal domain DUF382 PF04037.13 gi|257388446|ref|YP_003178219.1| - 0.19 11.9 0.8 0.43 10.7 0.7 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF382) FUN14 PF04930.15 gi|257388447|ref|YP_003178220.1| - 1.2e-21 76.9 5.9 1.4e-21 76.7 5.9 1.1 1 0 0 1 1 1 1 FUN14 family Cu PF17563.2 gi|257388447|ref|YP_003178220.1| - 5.2 7.4 7.3 5.3 7.3 1.4 2.2 2 0 0 2 2 2 0 Cupiennin GTP-bdg_N PF13167.6 gi|257388448|ref|YP_003178221.1| - 8.5e-22 77.6 0.0 1.9e-21 76.5 0.0 1.7 1 0 0 1 1 1 1 GTP-binding GTPase N-terminal MMR_HSR1 PF01926.23 gi|257388448|ref|YP_003178221.1| - 5.3e-17 61.9 0.0 1.1e-16 61.0 0.0 1.5 1 0 0 1 1 1 1 50S ribosome-binding GTPase GTP-bdg_M PF16360.5 gi|257388448|ref|YP_003178221.1| - 1.7e-15 57.4 8.3 3.4e-15 56.4 8.3 1.5 1 0 0 1 1 1 1 GTP-binding GTPase Middle Region GTP_EFTU PF00009.27 gi|257388448|ref|YP_003178221.1| - 6.6e-09 35.6 0.1 2.5e-08 33.7 0.1 1.9 1 1 0 1 1 1 1 Elongation factor Tu GTP binding domain RsgA_GTPase PF03193.16 gi|257388448|ref|YP_003178221.1| - 1.4e-08 34.8 0.1 0.00026 21.0 0.1 2.5 2 0 0 2 2 2 2 RsgA GTPase MMR_HSR1_Xtn PF16897.5 gi|257388448|ref|YP_003178221.1| - 2.5e-06 27.4 0.0 5.2e-06 26.4 0.0 1.5 1 0 0 1 1 1 1 C-terminal region of MMR_HSR1 domain cobW PF02492.19 gi|257388448|ref|YP_003178221.1| - 2.9e-06 27.0 0.3 0.00051 19.7 0.1 2.6 1 1 1 2 2 2 1 CobW/HypB/UreG, nucleotide-binding domain FeoB_N PF02421.18 gi|257388448|ref|YP_003178221.1| - 0.00013 21.5 0.6 0.058 12.9 0.1 2.6 3 0 0 3 3 3 2 Ferrous iron transport protein B MnmE_helical PF12631.7 gi|257388448|ref|YP_003178221.1| - 0.0058 16.8 0.1 0.01 16.0 0.1 1.4 1 0 0 1 1 1 1 MnmE helical domain Ras PF00071.22 gi|257388448|ref|YP_003178221.1| - 0.0082 15.8 0.0 0.034 13.7 0.0 2.0 1 1 0 1 1 1 1 Ras family AAA_18 PF13238.6 gi|257388448|ref|YP_003178221.1| - 0.015 15.9 0.3 0.095 13.3 0.0 2.3 2 1 1 3 3 2 0 AAA domain Arf PF00025.21 gi|257388448|ref|YP_003178221.1| - 0.071 12.6 0.0 12 5.3 0.0 2.3 2 0 0 2 2 2 0 ADP-ribosylation factor family Roc PF08477.13 gi|257388448|ref|YP_003178221.1| - 0.11 12.7 0.0 2 8.7 0.0 2.3 1 1 0 1 1 1 0 Ras of Complex, Roc, domain of DAPkinase Trans_reg_C PF00486.28 gi|257388448|ref|YP_003178221.1| - 0.12 12.5 0.4 6.1 7.0 0.0 2.8 2 0 0 2 2 2 0 Transcriptional regulatory protein, C terminal ABC_tran PF00005.27 gi|257388448|ref|YP_003178221.1| - 0.12 12.9 0.0 0.41 11.2 0.0 2.0 1 1 1 2 2 2 0 ABC transporter AAA_14 PF13173.6 gi|257388448|ref|YP_003178221.1| - 0.13 12.3 0.0 0.32 11.0 0.0 1.6 1 0 0 1 1 1 0 AAA domain Nif11 PF07862.11 gi|257388448|ref|YP_003178221.1| - 0.13 12.5 0.5 0.81 10.0 0.1 2.4 2 0 0 2 2 2 0 Nif11 domain cwf21 PF08312.12 gi|257388448|ref|YP_003178221.1| - 0.64 10.2 6.8 1.2 9.3 2.0 3.0 2 1 0 2 2 2 0 cwf21 domain DUF4604 PF15377.6 gi|257388448|ref|YP_003178221.1| - 1.1 9.7 3.7 1.6 9.1 0.2 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4604) Carb_kinase PF01256.17 gi|257388449|ref|YP_003178222.1| - 7.5e-50 169.7 3.4 1.1e-49 169.2 3.4 1.2 1 0 0 1 1 1 1 Carbohydrate kinase YjeF_N PF03853.15 gi|257388449|ref|YP_003178222.1| - 4.7e-42 143.8 2.7 1.2e-41 142.4 0.4 2.2 2 0 0 2 2 2 1 YjeF-related protein N-terminus HK PF02110.15 gi|257388449|ref|YP_003178222.1| - 2.7e-07 30.3 0.7 6.1e-07 29.1 0.7 1.6 1 0 0 1 1 1 1 Hydroxyethylthiazole kinase family Acylphosphatase PF00708.18 gi|257388450|ref|YP_003178223.1| - 2.7e-25 88.6 0.1 3e-25 88.4 0.1 1.0 1 0 0 1 1 1 1 Acylphosphatase HhH-GPD PF00730.25 gi|257388451|ref|YP_003178224.1| - 1.3e-11 44.9 0.0 2.2e-11 44.1 0.0 1.4 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein OGG_N PF07934.12 gi|257388451|ref|YP_003178224.1| - 3.1e-05 24.0 0.0 0.00011 22.3 0.0 1.8 1 1 0 1 1 1 1 8-oxoguanine DNA glycosylase, N-terminal domain DUF555 PF04475.12 gi|257388452|ref|YP_003178225.1| - 4.1e-41 139.4 0.2 5.6e-41 139.0 0.2 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF555) Zn_Tnp_IS1595 PF12760.7 gi|257388452|ref|YP_003178225.1| - 0.065 13.2 0.0 0.14 12.2 0.0 1.5 1 0 0 1 1 1 0 Transposase zinc-ribbon domain UPF0058 PF01893.16 gi|257388453|ref|YP_003178226.1| - 1.4e-20 73.3 0.7 1.7e-20 73.1 0.7 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 eIF-5_eIF-2B PF01873.17 gi|257388454|ref|YP_003178227.1| - 7.5e-37 125.8 0.0 9.1e-37 125.5 0.0 1.0 1 0 0 1 1 1 1 Domain found in IF2B/IF5 TF_Zn_Ribbon PF08271.12 gi|257388454|ref|YP_003178227.1| - 0.0054 16.2 0.7 0.012 15.1 0.7 1.6 1 0 0 1 1 1 1 TFIIB zinc-binding Nuclease_act PF08133.11 gi|257388454|ref|YP_003178227.1| - 0.018 15.2 0.0 0.031 14.4 0.0 1.3 1 0 0 1 1 1 0 Anticodon nuclease activator family Lar_restr_allev PF14354.6 gi|257388454|ref|YP_003178227.1| - 0.03 14.7 0.2 0.048 14.0 0.2 1.5 1 0 0 1 1 1 0 Restriction alleviation protein Lar Zn-ribbon_8 PF09723.10 gi|257388454|ref|YP_003178227.1| - 0.035 14.2 0.8 6.5 7.0 0.0 3.0 3 0 0 3 3 3 0 Zinc ribbon domain DZR PF12773.7 gi|257388454|ref|YP_003178227.1| - 0.052 13.6 0.4 0.11 12.6 0.4 1.5 1 0 0 1 1 1 0 Double zinc ribbon zf-RING_7 PF02591.15 gi|257388454|ref|YP_003178227.1| - 0.079 13.2 0.2 16 5.8 0.0 2.5 2 0 0 2 2 2 0 C4-type zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|257388454|ref|YP_003178227.1| - 0.08 12.9 0.1 0.16 12.0 0.1 1.5 1 0 0 1 1 1 0 Transposase zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|257388454|ref|YP_003178227.1| - 0.1 12.4 0.6 13 5.7 0.1 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Elf1 PF05129.13 gi|257388454|ref|YP_003178227.1| - 0.14 12.2 0.0 0.25 11.4 0.0 1.4 1 0 0 1 1 1 0 Transcription elongation factor Elf1 like zinc_ribbon_4 PF13717.6 gi|257388454|ref|YP_003178227.1| - 0.16 12.0 3.4 1.6 8.8 2.7 2.7 2 1 1 3 3 3 0 zinc-ribbon domain DNA_RNApol_7kD PF03604.13 gi|257388454|ref|YP_003178227.1| - 0.38 10.5 1.9 2.9 7.6 2.0 2.1 1 1 1 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit zf-ribbon_3 PF13248.6 gi|257388454|ref|YP_003178227.1| - 0.46 10.0 2.7 8 6.0 0.3 2.4 2 0 0 2 2 2 0 zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|257388454|ref|YP_003178227.1| - 1 9.2 4.3 2.1 8.1 0.4 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain PhnA_Zn_Ribbon PF08274.12 gi|257388455|ref|YP_003178228.1| - 0.0003 20.7 1.3 0.14 12.1 0.3 2.3 2 0 0 2 2 2 2 PhnA Zinc-Ribbon HypA PF01155.19 gi|257388455|ref|YP_003178228.1| - 0.0021 18.1 0.3 0.0021 18.1 0.3 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA RNHCP PF12647.7 gi|257388455|ref|YP_003178228.1| - 0.004 17.1 0.4 0.0045 16.9 0.4 1.1 1 0 0 1 1 1 1 RNHCP domain zinc_ribbon_4 PF13717.6 gi|257388455|ref|YP_003178228.1| - 0.005 16.7 2.8 0.17 11.8 3.6 2.1 1 1 2 3 3 3 2 zinc-ribbon domain Zn_Tnp_IS1 PF03811.13 gi|257388455|ref|YP_003178228.1| - 0.0051 16.5 0.7 0.66 9.7 0.4 2.2 2 0 0 2 2 2 1 InsA N-terminal domain zinc_ribbon_10 PF10058.9 gi|257388455|ref|YP_003178228.1| - 0.0054 16.4 0.5 0.0075 16.0 0.5 1.3 1 0 0 1 1 1 1 Predicted integral membrane zinc-ribbon metal-binding protein zinc_ribbon_9 PF14369.6 gi|257388455|ref|YP_003178228.1| - 0.0092 16.2 0.4 1.9 8.8 0.1 2.2 2 0 0 2 2 2 1 zinc-ribbon TF_Zn_Ribbon PF08271.12 gi|257388455|ref|YP_003178228.1| - 0.014 14.9 1.5 0.48 10.0 0.1 2.1 2 0 0 2 2 2 0 TFIIB zinc-binding zf-ribbon_3 PF13248.6 gi|257388455|ref|YP_003178228.1| - 0.016 14.6 1.7 0.73 9.3 0.2 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc-ribbons_6 PF07191.12 gi|257388455|ref|YP_003178228.1| - 0.016 15.2 1.8 0.027 14.4 1.9 1.4 1 1 0 1 1 1 0 zinc-ribbons zf_Rg PF17915.1 gi|257388455|ref|YP_003178228.1| - 0.018 14.4 0.1 3.9 7.0 0.1 2.2 2 0 0 2 2 2 0 Reverse gyrase zinc finger DZR PF12773.7 gi|257388455|ref|YP_003178228.1| - 0.018 15.0 3.0 0.029 14.4 3.0 1.3 1 1 0 1 1 1 0 Double zinc ribbon zf_UBZ PF18439.1 gi|257388455|ref|YP_003178228.1| - 0.031 13.9 1.0 5.2 6.7 0.1 2.3 2 0 0 2 2 2 0 Ubiquitin-Binding Zinc Finger DUF1610 PF07754.11 gi|257388455|ref|YP_003178228.1| - 0.032 14.2 3.7 2.1 8.4 0.1 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Zn-ribbon_8 PF09723.10 gi|257388455|ref|YP_003178228.1| - 0.032 14.3 3.2 0.066 13.3 3.2 1.6 1 1 0 1 1 1 0 Zinc ribbon domain zf-RING_4 PF14570.6 gi|257388455|ref|YP_003178228.1| - 0.042 13.6 1.9 3.5 7.5 0.1 2.2 2 0 0 2 2 2 0 RING/Ubox like zinc-binding domain Zn_Tnp_IS1595 PF12760.7 gi|257388455|ref|YP_003178228.1| - 0.076 13.0 4.3 0.73 9.9 0.8 2.1 1 1 1 2 2 2 0 Transposase zinc-ribbon domain NMD3 PF04981.13 gi|257388455|ref|YP_003178228.1| - 0.085 12.3 0.2 0.088 12.3 0.2 1.0 1 0 0 1 1 1 0 NMD3 family DUF35_N PF12172.8 gi|257388455|ref|YP_003178228.1| - 0.13 12.2 2.6 3.4 7.6 0.7 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) DUF3797 PF12677.7 gi|257388455|ref|YP_003178228.1| - 0.13 12.1 0.5 10 6.1 0.1 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF3797) Anti-TRAP PF15777.5 gi|257388455|ref|YP_003178228.1| - 0.14 12.2 2.9 0.29 11.1 2.9 1.5 1 1 0 1 1 1 0 Tryptophan RNA-binding attenuator protein inhibitory protein TFIIS_C PF01096.18 gi|257388455|ref|YP_003178228.1| - 0.16 11.9 2.3 3.6 7.5 0.2 2.2 2 0 0 2 2 2 0 Transcription factor S-II (TFIIS) OrfB_Zn_ribbon PF07282.11 gi|257388455|ref|YP_003178228.1| - 0.28 11.1 2.2 0.36 10.8 2.2 1.3 1 1 0 1 1 1 0 Putative transposase DNA-binding domain DUF2757 PF10955.8 gi|257388455|ref|YP_003178228.1| - 0.31 11.3 2.3 2.7 8.3 0.0 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF2757) Rubredoxin PF00301.20 gi|257388455|ref|YP_003178228.1| - 0.49 10.5 6.2 0.46 10.5 0.4 2.2 1 1 1 2 2 2 0 Rubredoxin zf-TFIIB PF13453.6 gi|257388455|ref|YP_003178228.1| - 0.59 9.5 4.7 3.6 7.0 0.5 2.0 1 1 1 2 2 2 0 Transcription factor zinc-finger zf-LITAF-like PF10601.9 gi|257388455|ref|YP_003178228.1| - 0.9 9.9 5.4 4.2 7.7 1.2 2.1 1 1 2 3 3 3 0 LITAF-like zinc ribbon domain Rubredoxin_2 PF18073.1 gi|257388455|ref|YP_003178228.1| - 1.1 9.1 6.9 4.8 7.0 0.8 2.3 2 0 0 2 2 2 0 Rubredoxin metal binding domain TFIIB PF00382.19 gi|257388456|ref|YP_003178229.1| - 1.1e-38 131.1 0.2 2.5e-18 65.9 0.1 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|257388456|ref|YP_003178229.1| - 5.2e-17 61.1 2.7 1e-16 60.1 2.7 1.5 1 0 0 1 1 1 1 TFIIB zinc-binding Cyclin_C PF02984.19 gi|257388456|ref|YP_003178229.1| - 0.001 19.2 0.0 0.25 11.4 0.0 2.3 2 0 0 2 2 2 1 Cyclin, C-terminal domain Sigma70_r4 PF04545.16 gi|257388456|ref|YP_003178229.1| - 0.014 14.9 0.0 0.22 11.1 0.0 2.6 2 0 0 2 2 2 0 Sigma-70, region 4 DZR PF12773.7 gi|257388456|ref|YP_003178229.1| - 0.035 14.1 0.5 0.078 13.0 0.5 1.5 1 0 0 1 1 1 0 Double zinc ribbon Cyclin_N PF00134.23 gi|257388456|ref|YP_003178229.1| - 0.055 13.2 0.0 0.11 12.2 0.0 1.5 1 0 0 1 1 1 0 Cyclin, N-terminal domain OrfB_Zn_ribbon PF07282.11 gi|257388456|ref|YP_003178229.1| - 0.11 12.4 0.5 0.23 11.4 0.5 1.5 1 0 0 1 1 1 0 Putative transposase DNA-binding domain NinF PF05810.12 gi|257388456|ref|YP_003178229.1| - 0.14 12.0 2.7 0.29 11.0 2.7 1.4 1 0 0 1 1 1 0 NinF protein A2L_zn_ribbon PF08792.10 gi|257388456|ref|YP_003178229.1| - 0.22 11.3 1.2 0.51 10.1 1.2 1.6 1 1 0 1 1 1 0 A2L zinc ribbon domain zf-ribbon_3 PF13248.6 gi|257388456|ref|YP_003178229.1| - 0.59 9.6 2.8 11 5.6 0.4 2.3 1 1 1 2 2 2 0 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|257388456|ref|YP_003178229.1| - 1.6 8.9 5.4 5.2 7.3 0.6 2.4 1 1 1 2 2 2 0 Zinc ribbon domain zf_UBZ PF18439.1 gi|257388456|ref|YP_003178229.1| - 2.4 7.8 4.1 5.2 6.8 0.2 2.3 1 1 1 2 2 2 0 Ubiquitin-Binding Zinc Finger DUF357 PF04010.13 gi|257388457|ref|YP_003178230.1| - 8.3e-31 105.9 0.2 9.6e-31 105.7 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF357) Cas_Cas1 PF01867.16 gi|257388457|ref|YP_003178230.1| - 0.14 11.3 0.0 0.16 11.1 0.0 1.1 1 0 0 1 1 1 0 CRISPR associated protein Cas1 Pyr_redox_2 PF07992.14 gi|257388458|ref|YP_003178231.1| - 1.4e-42 146.0 1.0 1.6e-42 145.8 1.0 1.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.6 gi|257388458|ref|YP_003178231.1| - 4.4e-16 59.0 0.1 1.4e-13 50.8 0.0 2.5 2 1 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|257388458|ref|YP_003178231.1| - 2.9e-15 56.6 0.6 6.8e-14 52.2 0.1 2.4 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|257388458|ref|YP_003178231.1| - 1e-05 24.8 1.2 0.0038 16.4 0.1 3.4 3 1 1 4 4 4 1 FAD binding domain NAD_binding_8 PF13450.6 gi|257388458|ref|YP_003178231.1| - 6.2e-05 23.1 0.0 0.00028 21.1 0.0 2.2 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain HI0933_like PF03486.14 gi|257388458|ref|YP_003178231.1| - 0.0007 18.4 0.0 0.68 8.6 0.0 3.1 4 0 0 4 4 4 2 HI0933-like protein DAO PF01266.24 gi|257388458|ref|YP_003178231.1| - 0.0015 18.2 5.3 0.3 10.6 0.1 3.1 2 1 0 3 3 3 2 FAD dependent oxidoreductase FAD_oxidored PF12831.7 gi|257388458|ref|YP_003178231.1| - 0.0038 16.6 0.1 0.0092 15.4 0.0 1.7 2 0 0 2 2 2 1 FAD dependent oxidoreductase NAD_binding_7 PF13241.6 gi|257388458|ref|YP_003178231.1| - 0.0069 16.8 0.0 0.062 13.7 0.0 2.4 3 0 0 3 3 3 1 Putative NAD(P)-binding GIDA PF01134.22 gi|257388458|ref|YP_003178231.1| - 0.053 12.6 0.6 1.2 8.1 0.0 3.0 4 0 0 4 4 4 0 Glucose inhibited division protein A NAD_binding_9 PF13454.6 gi|257388458|ref|YP_003178231.1| - 0.1 12.6 3.0 0.85 9.6 0.0 3.3 3 1 1 4 4 4 0 FAD-NAD(P)-binding RibD_C PF01872.17 gi|257388460|ref|YP_003178233.1| - 7.1e-50 169.6 0.4 7.9e-50 169.5 0.4 1.0 1 0 0 1 1 1 1 RibD C-terminal domain tRNA_anti-codon PF01336.25 gi|257388462|ref|YP_003178235.1| - 6.2e-06 26.1 1.4 0.16 12.0 0.0 3.9 4 0 0 4 4 4 2 OB-fold nucleic acid binding domain zf-RING_7 PF02591.15 gi|257388462|ref|YP_003178235.1| - 0.027 14.6 0.5 0.065 13.4 0.5 1.6 1 0 0 1 1 1 0 C4-type zinc ribbon domain Metallophos_2 PF12850.7 gi|257388464|ref|YP_003178237.1| - 1.6e-08 34.9 0.4 2.6e-08 34.2 0.4 1.3 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|257388464|ref|YP_003178237.1| - 3.2e-07 31.1 0.9 8.1e-06 26.5 0.1 2.1 1 1 1 2 2 2 1 Calcineurin-like phosphoesterase zf-RING_4 PF14570.6 gi|257388465|ref|YP_003178238.1| - 0.0019 18.0 0.3 0.5 10.2 0.0 2.1 2 0 0 2 2 2 2 RING/Ubox like zinc-binding domain UPF0547 PF10571.9 gi|257388465|ref|YP_003178238.1| - 0.0025 17.9 5.2 0.075 13.1 0.3 2.1 2 0 0 2 2 2 2 Uncharacterised protein family UPF0547 Terminase_GpA PF05876.12 gi|257388465|ref|YP_003178238.1| - 0.0054 15.4 0.2 0.0062 15.2 0.2 1.0 1 0 0 1 1 1 1 Phage terminase large subunit (GpA) DUF35_N PF12172.8 gi|257388465|ref|YP_003178238.1| - 0.01 15.7 1.5 3.1 7.8 0.1 2.2 2 0 0 2 2 2 0 Rubredoxin-like zinc ribbon domain (DUF35_N) Rubredoxin_2 PF18073.1 gi|257388465|ref|YP_003178238.1| - 0.019 14.7 1.7 0.38 10.5 0.0 2.1 2 0 0 2 2 2 0 Rubredoxin metal binding domain IBR PF01485.21 gi|257388465|ref|YP_003178238.1| - 0.039 14.2 0.0 0.051 13.8 0.0 1.2 1 1 0 1 1 1 0 IBR domain, a half RING-finger domain zf_C2HC_14 PF18574.1 gi|257388465|ref|YP_003178238.1| - 0.069 13.0 0.2 12 5.8 0.0 2.1 2 0 0 2 2 2 0 C2HC Zing finger domain DiS_P_DiS PF06750.13 gi|257388465|ref|YP_003178238.1| - 0.079 13.1 0.6 0.35 11.0 0.0 1.9 1 1 1 2 2 2 0 Bacterial Peptidase A24 N-terminal domain zf-ACC PF17848.1 gi|257388465|ref|YP_003178238.1| - 0.17 12.0 2.1 4.9 7.3 0.1 2.1 2 0 0 2 2 2 0 Acetyl-coA carboxylase zinc finger domain zinc_ribbon_5 PF13719.6 gi|257388465|ref|YP_003178238.1| - 0.45 10.3 2.0 2.4 8.0 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain DUF3797 PF12677.7 gi|257388465|ref|YP_003178238.1| - 1.7 8.6 4.3 3.4 7.6 0.5 2.2 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) Peripla_BP_6 PF13458.6 gi|257388467|ref|YP_003178240.1| - 1.3e-31 110.5 10.6 1.9e-31 110.0 10.6 1.3 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.28 gi|257388467|ref|YP_003178240.1| - 1.8e-19 70.1 0.0 1.8e-18 66.8 0.0 1.9 1 1 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.6 gi|257388467|ref|YP_003178240.1| - 1.5e-05 24.2 0.2 0.00021 20.4 0.1 2.1 2 0 0 2 2 2 1 Periplasmic binding protein domain DUF4649 PF15507.6 gi|257388467|ref|YP_003178240.1| - 0.0067 16.4 0.0 0.015 15.3 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4649) TAT_signal PF10518.9 gi|257388467|ref|YP_003178240.1| - 0.012 15.4 1.5 0.012 15.4 1.5 2.2 3 0 0 3 3 3 0 TAT (twin-arginine translocation) pathway signal sequence AIRS PF00586.24 gi|257388467|ref|YP_003178240.1| - 0.015 15.9 2.0 0.14 12.9 0.3 2.7 2 1 1 3 3 3 0 AIR synthase related protein, N-terminal domain MCPsignal PF00015.21 gi|257388468|ref|YP_003178241.1| - 5.5e-42 143.5 23.8 5.5e-42 143.5 23.8 5.8 4 2 3 7 7 6 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 gi|257388468|ref|YP_003178241.1| - 2.3e-12 47.1 8.1 1.2e-07 32.0 0.1 5.9 5 3 1 6 6 5 2 HAMP domain DUF948 PF06103.11 gi|257388468|ref|YP_003178241.1| - 0.0004 20.6 42.4 0.15 12.3 4.2 7.1 4 2 1 5 5 5 2 Bacterial protein of unknown function (DUF948) Laminin_II PF06009.12 gi|257388468|ref|YP_003178241.1| - 0.00068 19.7 45.6 0.084 12.9 4.8 5.7 2 2 1 5 5 5 2 Laminin Domain II BLOC1_2 PF10046.9 gi|257388468|ref|YP_003178241.1| - 0.0021 18.3 33.5 1.7 9.0 0.5 6.1 3 2 2 5 5 5 3 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF1664 PF07889.12 gi|257388468|ref|YP_003178241.1| - 0.0024 17.9 38.7 0.25 11.4 3.3 6.1 3 2 3 6 6 6 3 Protein of unknown function (DUF1664) DUF2779 PF11074.8 gi|257388468|ref|YP_003178241.1| - 0.014 15.9 0.9 1.1 9.7 0.1 3.5 4 0 0 4 4 2 0 Domain of unknown function(DUF2779) HMMR_N PF15905.5 gi|257388468|ref|YP_003178241.1| - 0.082 12.4 34.9 0.013 15.0 8.0 3.7 1 1 1 3 3 3 0 Hyaluronan mediated motility receptor N-terminal DUF2203 PF09969.9 gi|257388468|ref|YP_003178241.1| - 0.091 13.5 33.3 0.12 13.1 1.9 5.5 1 1 3 5 5 5 0 Uncharacterized conserved protein (DUF2203) Muted PF14942.6 gi|257388468|ref|YP_003178241.1| - 0.11 12.8 25.5 0.99 9.7 3.3 4.2 3 1 0 3 3 3 0 Organelle biogenesis, Muted-like protein Seryl_tRNA_N PF02403.22 gi|257388468|ref|YP_003178241.1| - 0.14 12.4 35.3 0.42 10.8 2.1 5.8 3 2 2 5 5 5 0 Seryl-tRNA synthetase N-terminal domain Spc7 PF08317.11 gi|257388468|ref|YP_003178241.1| - 0.16 10.8 41.2 0.048 12.5 4.7 4.4 1 1 3 4 4 4 0 Spc7 kinetochore protein Atg14 PF10186.9 gi|257388468|ref|YP_003178241.1| - 0.16 11.0 19.8 0.13 11.3 4.3 2.9 1 1 0 2 2 2 0 Vacuolar sorting 38 and autophagy-related subunit 14 IFT57 PF10498.9 gi|257388468|ref|YP_003178241.1| - 0.22 10.4 32.6 0.36 9.8 11.7 3.7 2 2 1 3 3 3 0 Intra-flagellar transport protein 57 Fib_alpha PF08702.10 gi|257388468|ref|YP_003178241.1| - 0.29 11.3 28.7 0.34 11.1 4.9 4.9 2 2 3 5 5 5 0 Fibrinogen alpha/beta chain family CorA PF01544.18 gi|257388468|ref|YP_003178241.1| - 0.38 10.0 21.4 0.28 10.4 3.8 4.0 2 2 0 3 3 3 0 CorA-like Mg2+ transporter protein DUF1319 PF07028.11 gi|257388468|ref|YP_003178241.1| - 0.92 9.8 4.3 0.94 9.7 0.2 3.1 3 0 0 3 3 3 0 Protein of unknown function (DUF1319) DUF4559 PF15112.6 gi|257388468|ref|YP_003178241.1| - 1.1 8.9 20.0 0.91 9.1 2.9 2.8 2 1 1 3 3 3 0 Domain of unknown function (DUF4559) Laminin_I PF06008.14 gi|257388468|ref|YP_003178241.1| - 1.8 8.2 36.7 0.051 13.3 4.5 4.7 2 1 0 4 4 4 0 Laminin Domain I OmpH PF03938.14 gi|257388468|ref|YP_003178241.1| - 2.4 8.5 35.6 3.1 8.1 7.5 4.3 3 2 1 4 4 4 0 Outer membrane protein (OmpH-like) Noelin-1 PF12308.8 gi|257388468|ref|YP_003178241.1| - 5 7.2 10.7 10 6.2 0.3 4.0 4 0 0 4 4 3 0 Neurogenesis glycoprotein DUF3584 PF12128.8 gi|257388468|ref|YP_003178241.1| - 5 4.5 43.8 0.19 9.2 30.8 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3584) ZapB PF06005.12 gi|257388468|ref|YP_003178241.1| - 5.4 7.5 22.7 10 6.7 1.5 5.9 2 1 4 6 6 6 0 Cell division protein ZapB FlgN PF05130.12 gi|257388468|ref|YP_003178241.1| - 5.6 7.5 39.1 0.53 10.8 3.3 5.4 4 2 1 5 5 5 0 FlgN protein Syntaxin_2 PF14523.6 gi|257388468|ref|YP_003178241.1| - 8.6 6.8 21.2 19 5.7 2.1 5.3 1 1 3 5 5 5 0 Syntaxin-like protein KxDL PF10241.9 gi|257388468|ref|YP_003178241.1| - 9.8 6.5 9.8 13 6.2 0.7 4.3 3 2 1 4 4 4 0 Uncharacterized conserved protein DEAD_assoc PF08494.11 gi|257388469|ref|YP_003178242.1| - 7.3e-36 123.8 0.4 2.3e-35 122.2 0.0 2.0 2 0 0 2 2 2 1 DEAD/H associated DEAD PF00270.29 gi|257388469|ref|YP_003178242.1| - 9.5e-29 100.4 0.0 3.4e-28 98.6 0.0 1.9 2 0 0 2 2 2 1 DEAD/DEAH box helicase Helicase_C PF00271.31 gi|257388469|ref|YP_003178242.1| - 1.6e-20 73.5 0.0 4.3e-20 72.1 0.0 1.7 1 0 0 1 1 1 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|257388469|ref|YP_003178242.1| - 9.3e-09 35.5 0.0 2.6e-08 34.1 0.0 1.7 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit AAA_19 PF13245.6 gi|257388469|ref|YP_003178242.1| - 0.00027 21.3 0.1 0.0073 16.6 0.0 2.5 2 1 0 2 2 2 1 AAA domain AAA_25 PF13481.6 gi|257388469|ref|YP_003178242.1| - 0.00042 19.9 0.9 0.00042 19.9 0.9 2.6 3 0 0 3 3 3 1 AAA domain SNF2_N PF00176.23 gi|257388469|ref|YP_003178242.1| - 0.11 11.2 0.0 0.23 10.2 0.0 1.5 2 0 0 2 2 2 0 SNF2 family N-terminal domain Pentapeptide_3 PF13576.6 gi|257388470|ref|YP_003178243.1| - 4.9e-50 167.5 95.9 9e-12 45.0 6.2 10.0 3 2 7 10 10 10 9 Pentapeptide repeats (9 copies) Pentapeptide PF00805.22 gi|257388470|ref|YP_003178243.1| - 5.9e-07 29.0 15.2 5.6 6.7 0.0 10.9 9 4 1 10 10 10 4 Pentapeptide repeats (8 copies) Ion_trans_2 PF07885.16 gi|257388470|ref|YP_003178243.1| - 6.1e-05 22.9 2.1 0.00013 21.9 2.0 1.6 1 1 0 1 1 1 1 Ion channel Bactofilin PF04519.13 gi|257388471|ref|YP_003178244.1| - 7.2e-05 23.0 4.3 8.4e-05 22.8 4.3 1.2 1 0 0 1 1 1 1 Polymer-forming cytoskeletal Fil_haemagg_2 PF13332.6 gi|257388471|ref|YP_003178244.1| - 0.021 15.0 2.6 3.6 7.7 0.2 2.9 1 1 2 3 3 3 0 Hemagglutinin repeat FapA PF03961.13 gi|257388471|ref|YP_003178244.1| - 0.028 13.0 1.6 0.033 12.8 1.6 1.0 1 0 0 1 1 1 0 Flagellar Assembly Protein A DUF5608 PF18356.1 gi|257388471|ref|YP_003178244.1| - 0.071 13.1 1.1 0.11 12.5 0.4 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF5608) G8 PF10162.9 gi|257388471|ref|YP_003178244.1| - 0.11 12.6 2.2 0.48 10.5 0.5 1.9 1 1 1 2 2 2 0 G8 domain DZR PF12773.7 gi|257388472|ref|YP_003178245.1| - 0.022 14.8 0.2 0.038 14.0 0.2 1.3 1 0 0 1 1 1 0 Double zinc ribbon DUF3060 PF11259.8 gi|257388472|ref|YP_003178245.1| - 0.1 12.3 2.7 0.16 11.7 1.0 2.2 2 1 0 2 2 2 0 Protein of unknown function (DUF3060) DUF2617 PF10936.8 gi|257388473|ref|YP_003178246.1| - 2.1e-07 31.2 1.5 1.8e-06 28.1 1.5 2.6 1 1 0 1 1 1 1 Protein of unknown function DUF2617 Peptidase_S66 PF02016.15 gi|257388473|ref|YP_003178246.1| - 0.16 12.0 0.0 0.25 11.5 0.0 1.4 1 1 0 1 1 1 0 LD-carboxypeptidase N-terminal domain Spermine_synth PF01564.17 gi|257388474|ref|YP_003178247.1| - 4.6e-13 49.0 0.0 6.6e-13 48.5 0.0 1.2 1 0 0 1 1 1 1 Spermine/spermidine synthase domain MobA_MobL PF03389.15 gi|257388474|ref|YP_003178247.1| - 0.029 14.1 0.0 0.045 13.5 0.0 1.2 1 0 0 1 1 1 0 MobA/MobL family Methyltransf_30 PF05430.11 gi|257388474|ref|YP_003178247.1| - 0.036 14.0 0.0 0.062 13.2 0.0 1.3 1 0 0 1 1 1 0 S-adenosyl-L-methionine-dependent methyltransferase MutS_V PF00488.21 gi|257388476|ref|YP_003178249.1| - 8.6e-09 35.7 0.0 1.9e-08 34.6 0.0 1.6 1 0 0 1 1 1 1 MutS domain V AAA_21 PF13304.6 gi|257388476|ref|YP_003178249.1| - 0.007 16.2 0.0 0.015 15.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA_28 PF13521.6 gi|257388476|ref|YP_003178249.1| - 0.013 15.7 0.0 0.013 15.7 0.0 2.8 3 1 1 4 4 4 0 AAA domain AAA_14 PF13173.6 gi|257388476|ref|YP_003178249.1| - 0.088 12.9 0.0 0.16 12.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_23 PF13476.6 gi|257388476|ref|YP_003178249.1| - 0.18 12.3 0.0 0.32 11.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain IMS_HHH PF11798.8 gi|257388476|ref|YP_003178249.1| - 0.2 12.0 0.0 0.49 10.8 0.0 1.7 1 0 0 1 1 1 0 IMS family HHH motif PreAtp-grasp PF18604.1 gi|257388476|ref|YP_003178249.1| - 0.55 9.9 6.8 0.15 11.7 1.0 3.0 3 1 0 3 3 3 0 Pre ATP-grasp domain HTH_18 PF12833.7 gi|257388476|ref|YP_003178249.1| - 1 9.7 4.3 2.5 8.4 1.0 3.0 2 1 1 3 3 3 0 Helix-turn-helix domain Copper-bind PF00127.20 gi|257388479|ref|YP_003178252.1| - 4.5e-36 123.3 3.2 7.4e-17 61.6 0.2 2.9 2 2 0 2 2 2 2 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.6 gi|257388479|ref|YP_003178252.1| - 2.1e-15 56.7 0.0 1.7e-06 28.0 0.0 2.1 2 0 0 2 2 2 2 Cupredoxin-like domain PKD PF00801.20 gi|257388479|ref|YP_003178252.1| - 0.00032 20.5 11.2 0.055 13.3 2.3 2.7 2 0 0 2 2 2 2 PKD domain DUF2924 PF11149.8 gi|257388479|ref|YP_003178252.1| - 0.018 15.4 0.2 9.4 6.6 0.0 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2924) DUF5640 PF18692.1 gi|257388479|ref|YP_003178252.1| - 0.018 15.0 1.7 5.2 7.2 0.2 2.5 2 0 0 2 2 2 0 Family of unknown function (DUF5640) DUF5125 PF17163.4 gi|257388479|ref|YP_003178252.1| - 0.32 11.2 3.1 9.6 6.3 0.1 2.7 2 2 0 2 2 2 0 Domain of unknown function (DUF5125) TAT_signal PF10518.9 gi|257388479|ref|YP_003178252.1| - 7.8 6.5 10.4 0.36 10.7 4.2 2.1 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence Hydrolase_3 PF08282.12 gi|257388480|ref|YP_003178253.1| - 5.9e-09 36.0 0.0 0.00087 19.1 0.0 2.2 2 0 0 2 2 2 2 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|257388480|ref|YP_003178253.1| - 0.0009 19.7 0.7 0.59 10.5 0.0 2.7 1 1 0 2 2 2 2 haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|257388480|ref|YP_003178253.1| - 0.01 16.1 0.1 0.13 12.5 0.0 2.2 2 1 1 3 3 3 0 haloacid dehalogenase-like hydrolase S6PP PF05116.13 gi|257388480|ref|YP_003178253.1| - 0.022 14.3 0.0 0.58 9.6 0.0 2.2 2 0 0 2 2 2 0 Sucrose-6F-phosphate phosphohydrolase ZapA PF05164.13 gi|257388480|ref|YP_003178253.1| - 0.038 14.4 0.0 0.98 9.9 0.0 2.5 2 0 0 2 2 2 0 Cell division protein ZapA DUF3316 PF11777.8 gi|257388481|ref|YP_003178254.1| - 0.21 11.6 0.0 0.25 11.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3316) ADH_N PF08240.12 gi|257388482|ref|YP_003178255.1| - 4.7e-26 90.8 1.3 4.7e-26 90.8 1.3 2.0 2 0 0 2 2 2 1 Alcohol dehydrogenase GroES-like domain ADH_zinc_N PF00107.26 gi|257388482|ref|YP_003178255.1| - 8.5e-24 84.0 1.5 1.5e-23 83.2 1.5 1.4 1 0 0 1 1 1 1 Zinc-binding dehydrogenase Glu_dehyd_C PF16912.5 gi|257388482|ref|YP_003178255.1| - 2.1e-06 27.4 0.7 3.7e-06 26.6 0.7 1.3 1 0 0 1 1 1 1 Glucose dehydrogenase C-terminus ADH_N_assoc PF13823.6 gi|257388482|ref|YP_003178255.1| - 1.6e-05 24.7 0.1 4e-05 23.4 0.1 1.8 1 0 0 1 1 1 1 Alcohol dehydrogenase GroES-associated ADH_zinc_N_2 PF13602.6 gi|257388482|ref|YP_003178255.1| - 0.0071 17.4 0.3 0.016 16.2 0.3 1.7 1 1 0 1 1 1 1 Zinc-binding dehydrogenase FAD_binding_2 PF00890.24 gi|257388483|ref|YP_003178256.1| - 5.1e-10 39.0 0.3 5.7e-10 38.8 0.3 1.0 1 0 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|257388483|ref|YP_003178256.1| - 1.5e-08 34.3 0.1 1.5e-08 34.2 0.1 1.0 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase DAO PF01266.24 gi|257388483|ref|YP_003178256.1| - 2.7e-08 33.8 0.3 2.9e-08 33.7 0.3 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|257388483|ref|YP_003178256.1| - 8.8e-07 29.1 0.2 9.5e-07 29.0 0.2 1.1 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain GIDA PF01134.22 gi|257388483|ref|YP_003178256.1| - 1.4e-06 27.7 0.2 1.4e-06 27.7 0.2 1.0 1 0 0 1 1 1 1 Glucose inhibited division protein A FAD_oxidored PF12831.7 gi|257388483|ref|YP_003178256.1| - 1.4e-06 27.9 2.2 1.7e-06 27.7 2.2 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|257388483|ref|YP_003178256.1| - 2.7e-06 26.9 0.1 2.7e-06 26.9 0.1 1.0 1 0 0 1 1 1 1 FAD binding domain AlaDh_PNT_C PF01262.21 gi|257388483|ref|YP_003178256.1| - 7.8e-06 25.3 0.2 7.8e-06 25.3 0.2 1.0 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain Thi4 PF01946.17 gi|257388483|ref|YP_003178256.1| - 2e-05 23.9 0.3 2.3e-05 23.8 0.3 1.1 1 0 0 1 1 1 1 Thi4 family HI0933_like PF03486.14 gi|257388483|ref|YP_003178256.1| - 3.9e-05 22.6 0.1 4.2e-05 22.4 0.1 1.0 1 0 0 1 1 1 1 HI0933-like protein Pyr_redox PF00070.27 gi|257388483|ref|YP_003178256.1| - 5.7e-05 23.6 0.1 6.3e-05 23.5 0.1 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|257388483|ref|YP_003178256.1| - 0.0001 21.5 0.1 0.00011 21.3 0.1 1.0 1 0 0 1 1 1 1 Lycopene cyclase protein Pyr_redox_3 PF13738.6 gi|257388483|ref|YP_003178256.1| - 0.0017 17.7 0.0 0.0018 17.6 0.0 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|257388483|ref|YP_003178256.1| - 0.002 18.0 0.1 0.002 18.0 0.1 1.1 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Trp_halogenase PF04820.14 gi|257388483|ref|YP_003178256.1| - 0.022 13.6 0.0 0.022 13.6 0.0 1.1 1 0 0 1 1 1 0 Tryptophan halogenase Peripla_BP_2 PF01497.18 gi|257388484|ref|YP_003178257.1| - 2e-11 43.9 0.1 3.7e-11 43.0 0.1 1.4 1 0 0 1 1 1 1 Periplasmic binding protein TAT_signal PF10518.9 gi|257388484|ref|YP_003178257.1| - 0.004 16.9 0.0 0.0058 16.4 0.0 1.2 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence ABC_tran PF00005.27 gi|257388485|ref|YP_003178258.1| - 2.7e-30 105.7 0.0 4.6e-30 104.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|257388485|ref|YP_003178258.1| - 1.6e-12 47.9 3.8 2.2e-05 24.4 0.2 2.4 1 1 1 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|257388485|ref|YP_003178258.1| - 2.4e-11 43.5 0.0 4.9e-06 26.1 0.0 2.1 1 1 1 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_29 PF13555.6 gi|257388485|ref|YP_003178258.1| - 1.1e-05 25.0 0.1 2.1e-05 24.2 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_33 PF13671.6 gi|257388485|ref|YP_003178258.1| - 3.3e-05 24.1 0.1 0.00011 22.4 0.0 1.8 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|257388485|ref|YP_003178258.1| - 3.6e-05 24.2 0.3 7.2e-05 23.2 0.3 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_30 PF13604.6 gi|257388485|ref|YP_003178258.1| - 7.4e-05 22.6 0.1 0.00014 21.6 0.1 1.5 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|257388485|ref|YP_003178258.1| - 0.00022 21.5 2.1 0.0025 18.1 2.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|257388485|ref|YP_003178258.1| - 0.0011 19.5 0.0 0.0016 18.9 0.0 1.3 1 0 0 1 1 1 1 AAA domain ABC_ATPase PF09818.9 gi|257388485|ref|YP_003178258.1| - 0.0012 17.8 2.6 0.25 10.1 0.1 2.9 2 1 0 2 2 2 2 Predicted ATPase of the ABC class AAA_15 PF13175.6 gi|257388485|ref|YP_003178258.1| - 0.0019 18.0 0.0 0.0029 17.4 0.0 1.3 1 0 0 1 1 1 1 AAA ATPase domain MukB PF04310.12 gi|257388485|ref|YP_003178258.1| - 0.0029 17.4 1.2 0.0043 16.9 0.2 1.7 2 0 0 2 2 2 1 MukB N-terminal SRP54 PF00448.22 gi|257388485|ref|YP_003178258.1| - 0.0051 16.5 0.0 0.01 15.4 0.0 1.5 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_25 PF13481.6 gi|257388485|ref|YP_003178258.1| - 0.0065 16.1 1.1 0.018 14.6 0.0 2.1 2 1 0 2 2 2 1 AAA domain AAA PF00004.29 gi|257388485|ref|YP_003178258.1| - 0.011 16.2 0.3 0.031 14.7 0.0 1.9 2 1 1 3 3 2 0 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 gi|257388485|ref|YP_003178258.1| - 0.011 15.7 0.4 0.019 14.9 0.1 1.6 2 0 0 2 2 1 0 NACHT domain ATP_bind_1 PF03029.17 gi|257388485|ref|YP_003178258.1| - 0.011 15.6 0.2 1.9 8.2 0.0 2.1 2 0 0 2 2 2 0 Conserved hypothetical ATP binding protein Zeta_toxin PF06414.12 gi|257388485|ref|YP_003178258.1| - 0.011 15.0 0.0 0.024 13.9 0.0 1.5 1 0 0 1 1 1 0 Zeta toxin Mg_chelatase PF01078.21 gi|257388485|ref|YP_003178258.1| - 0.011 15.1 0.1 0.047 13.1 0.0 1.9 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_14 PF13173.6 gi|257388485|ref|YP_003178258.1| - 0.022 14.8 0.1 0.062 13.3 0.0 1.7 2 0 0 2 2 1 0 AAA domain RsgA_GTPase PF03193.16 gi|257388485|ref|YP_003178258.1| - 0.025 14.5 0.4 0.048 13.6 0.1 1.6 2 0 0 2 2 1 0 RsgA GTPase TniB PF05621.11 gi|257388485|ref|YP_003178258.1| - 0.027 13.9 0.1 1.3 8.4 0.1 2.1 2 0 0 2 2 2 0 Bacterial TniB protein AAA_24 PF13479.6 gi|257388485|ref|YP_003178258.1| - 0.027 14.2 0.3 0.7 9.6 0.1 2.2 2 0 0 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|257388485|ref|YP_003178258.1| - 0.028 15.0 0.1 0.077 13.5 0.1 2.0 1 1 0 1 1 1 0 AAA domain TsaE PF02367.17 gi|257388485|ref|YP_003178258.1| - 0.03 14.3 0.0 0.08 12.9 0.0 1.7 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_28 PF13521.6 gi|257388485|ref|YP_003178258.1| - 0.036 14.3 0.1 0.079 13.2 0.1 1.6 1 0 0 1 1 1 0 AAA domain MMR_HSR1 PF01926.23 gi|257388485|ref|YP_003178258.1| - 0.05 13.7 0.2 1.2 9.2 0.0 2.3 2 0 0 2 2 2 0 50S ribosome-binding GTPase APS_kinase PF01583.20 gi|257388485|ref|YP_003178258.1| - 0.05 13.5 0.1 0.092 12.6 0.1 1.4 1 0 0 1 1 1 0 Adenylylsulphate kinase Rad17 PF03215.15 gi|257388485|ref|YP_003178258.1| - 0.059 13.3 0.4 0.11 12.4 0.0 1.6 2 0 0 2 2 1 0 Rad17 P-loop domain RNA_helicase PF00910.22 gi|257388485|ref|YP_003178258.1| - 0.068 13.6 0.0 0.12 12.8 0.0 1.5 1 0 0 1 1 1 0 RNA helicase Cytidylate_kin PF02224.18 gi|257388485|ref|YP_003178258.1| - 0.071 12.8 0.2 0.21 11.3 0.1 1.8 1 1 1 2 2 1 0 Cytidylate kinase NTPase_1 PF03266.15 gi|257388485|ref|YP_003178258.1| - 0.084 12.8 0.9 3 7.7 0.1 2.2 2 0 0 2 2 2 0 NTPase Pilus_CpaD PF09476.10 gi|257388485|ref|YP_003178258.1| - 0.13 12.0 0.0 0.2 11.4 0.0 1.2 1 0 0 1 1 1 0 Pilus biogenesis CpaD protein (pilus_cpaD) AAA_5 PF07728.14 gi|257388485|ref|YP_003178258.1| - 0.13 12.2 0.2 0.43 10.6 0.1 1.9 1 1 0 1 1 1 0 AAA domain (dynein-related subfamily) cobW PF02492.19 gi|257388485|ref|YP_003178258.1| - 0.14 11.8 1.4 0.17 11.4 0.2 1.8 2 0 0 2 2 2 0 CobW/HypB/UreG, nucleotide-binding domain AAA_7 PF12775.7 gi|257388485|ref|YP_003178258.1| - 0.19 11.2 0.1 0.29 10.6 0.1 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region FecCD PF01032.18 gi|257388486|ref|YP_003178259.1| - 4.4e-89 298.6 36.0 5.4e-89 298.3 36.0 1.1 1 0 0 1 1 1 1 FecCD transport family SBF PF01758.16 gi|257388487|ref|YP_003178260.1| - 2.2e-13 50.3 15.2 2.2e-13 50.3 15.2 1.6 2 0 0 2 2 2 1 Sodium Bile acid symporter family Virul_fac_BrkB PF03631.15 gi|257388488|ref|YP_003178261.1| - 4.4e-47 160.9 30.6 4.9e-47 160.7 30.6 1.0 1 0 0 1 1 1 1 Virulence factor BrkB Rax2 PF12768.7 gi|257388488|ref|YP_003178261.1| - 0.011 15.2 0.7 0.011 15.2 0.7 1.8 2 0 0 2 2 2 0 Cortical protein marker for cell polarity AMP-binding PF00501.28 gi|257388489|ref|YP_003178262.1| - 1.9e-39 135.5 0.0 2.8e-39 134.9 0.0 1.2 1 0 0 1 1 1 1 AMP-binding enzyme Hemerythrin PF01814.23 gi|257388489|ref|YP_003178262.1| - 1e-10 42.3 8.0 5.1e-10 40.1 6.9 2.3 2 0 0 2 2 2 1 Hemerythrin HHE cation binding domain Pyridox_ox_2 PF12900.7 gi|257388490|ref|YP_003178263.1| - 3.2e-16 59.6 0.4 3.6e-16 59.4 0.4 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Putative_PNPOx PF01243.20 gi|257388490|ref|YP_003178263.1| - 8.7e-07 29.0 0.0 1.4e-06 28.4 0.0 1.2 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase HMA PF00403.26 gi|257388491|ref|YP_003178264.1| - 3.7e-18 65.7 0.8 4e-18 65.6 0.8 1.0 1 0 0 1 1 1 1 Heavy-metal-associated domain Histidinol_dh PF00815.20 gi|257388492|ref|YP_003178265.1| - 6e-153 509.7 10.5 7.1e-153 509.4 10.5 1.0 1 0 0 1 1 1 1 Histidinol dehydrogenase Band_7 PF01145.25 gi|257388492|ref|YP_003178265.1| - 0.026 14.5 4.8 0.24 11.4 1.3 2.6 2 0 0 2 2 2 0 SPFH domain / Band 7 family PhoU_div PF01865.16 gi|257388492|ref|YP_003178265.1| - 0.047 13.0 0.4 0.11 11.8 0.4 1.5 1 0 0 1 1 1 0 Protein of unknown function DUF47 Acetyltransf_10 PF13673.7 gi|257388493|ref|YP_003178266.1| - 1.6e-16 60.4 0.0 2e-16 60.1 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|257388493|ref|YP_003178266.1| - 5.8e-16 58.8 0.0 7.2e-16 58.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|257388493|ref|YP_003178266.1| - 1.9e-11 44.2 0.0 2.9e-11 43.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|257388493|ref|YP_003178266.1| - 2.4e-05 25.0 0.0 3e-05 24.7 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|257388493|ref|YP_003178266.1| - 2.7e-05 24.0 0.0 7.5e-05 22.6 0.0 1.7 2 0 0 2 2 2 1 FR47-like protein Acetyltransf_4 PF13420.7 gi|257388493|ref|YP_003178266.1| - 0.00012 22.2 0.0 0.00016 21.9 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|257388493|ref|YP_003178266.1| - 0.0034 17.5 0.1 0.009 16.1 0.1 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Fe-S_biosyn PF01521.20 gi|257388494|ref|YP_003178267.1| - 5.1e-18 65.3 0.0 5.8e-18 65.1 0.0 1.0 1 0 0 1 1 1 1 Iron-sulphur cluster biosynthesis Dodecin PF07311.12 gi|257388495|ref|YP_003178268.1| - 8.9e-23 80.3 0.3 9.7e-23 80.2 0.3 1.0 1 0 0 1 1 1 1 Dodecin DUF3005 PF11448.8 gi|257388495|ref|YP_003178268.1| - 0.1 12.6 0.0 0.13 12.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3005) DUF2238 PF09997.9 gi|257388496|ref|YP_003178269.1| - 0.00043 20.1 2.5 0.00068 19.4 2.5 1.5 1 1 0 1 1 1 1 Predicted membrane protein (DUF2238) DUF983 PF06170.12 gi|257388496|ref|YP_003178269.1| - 0.13 12.7 3.5 4.6 7.7 0.1 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF983) BPL_LplA_LipB PF03099.19 gi|257388497|ref|YP_003178270.1| - 0.02 14.8 0.1 0.029 14.3 0.1 1.3 1 0 0 1 1 1 0 Biotin/lipoate A/B protein ligase family DUF2070 PF09843.9 gi|257388497|ref|YP_003178270.1| - 1.1 7.4 11.1 1.5 7.0 11.1 1.1 1 0 0 1 1 1 0 Predicted membrane protein (DUF2070) FtsK_4TM PF13491.6 gi|257388497|ref|YP_003178270.1| - 1.3 8.7 18.8 0.034 13.9 9.1 2.2 1 1 1 2 2 2 0 4TM region of DNA translocase FtsK/SpoIIIE YdjM PF04307.14 gi|257388498|ref|YP_003178271.1| - 8.4e-14 51.2 19.9 2.5e-12 46.4 20.0 2.8 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase Usp PF00582.26 gi|257388501|ref|YP_003178274.1| - 2.5e-07 31.3 0.8 0.02 15.4 0.1 2.1 1 1 1 2 2 2 2 Universal stress protein family MCPsignal PF00015.21 gi|257388502|ref|YP_003178275.1| - 1.2e-43 148.9 54.3 2.3e-40 138.2 25.8 5.1 1 1 3 4 4 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF1664 PF07889.12 gi|257388502|ref|YP_003178275.1| - 1.4e-06 28.4 31.2 0.056 13.5 1.4 5.3 2 2 4 6 6 6 3 Protein of unknown function (DUF1664) KxDL PF10241.9 gi|257388502|ref|YP_003178275.1| - 3e-06 27.4 8.0 0.45 10.8 0.7 4.2 3 2 0 3 3 3 3 Uncharacterized conserved protein HAMP PF00672.25 gi|257388502|ref|YP_003178275.1| - 5e-06 26.8 0.0 5e-06 26.8 0.0 7.6 8 3 0 8 8 5 1 HAMP domain DUF948 PF06103.11 gi|257388502|ref|YP_003178275.1| - 1.2e-05 25.5 50.9 0.069 13.4 4.1 6.7 3 1 3 7 7 6 4 Bacterial protein of unknown function (DUF948) Alanine_zipper PF11839.8 gi|257388502|ref|YP_003178275.1| - 8.5e-05 22.8 9.0 8.5e-05 22.8 9.0 5.9 3 1 2 5 5 4 1 Alanine-zipper, major outer membrane lipoprotein CorA PF01544.18 gi|257388502|ref|YP_003178275.1| - 0.00031 20.1 20.8 0.22 10.8 0.1 3.8 3 1 1 4 4 4 3 CorA-like Mg2+ transporter protein ATG16 PF08614.11 gi|257388502|ref|YP_003178275.1| - 0.00032 21.0 35.0 0.0025 18.1 5.6 3.3 1 1 1 3 3 3 2 Autophagy protein 16 (ATG16) Occludin_ELL PF07303.13 gi|257388502|ref|YP_003178275.1| - 0.00052 20.7 4.0 4.6 8.0 0.0 5.3 3 2 4 7 7 7 0 Occludin homology domain DHC_N1 PF08385.12 gi|257388502|ref|YP_003178275.1| - 0.00059 18.6 0.1 0.034 12.8 0.0 2.2 1 1 0 2 2 2 1 Dynein heavy chain, N-terminal region 1 Spc7 PF08317.11 gi|257388502|ref|YP_003178275.1| - 0.0025 16.8 33.0 0.022 13.7 9.0 3.4 2 1 2 4 4 4 2 Spc7 kinetochore protein Syntaxin-6_N PF09177.11 gi|257388502|ref|YP_003178275.1| - 0.0031 18.0 29.3 4.5 7.9 1.1 5.4 2 2 2 4 4 4 0 Syntaxin 6, N-terminal Prominin PF05478.11 gi|257388502|ref|YP_003178275.1| - 0.0078 14.2 14.5 0.024 12.6 0.9 2.3 1 1 1 2 2 2 2 Prominin Mobilization_B PF17511.2 gi|257388502|ref|YP_003178275.1| - 0.0095 16.3 4.7 0.0095 16.3 4.7 4.6 3 1 2 5 5 5 1 Mobilization protein B ING PF12998.7 gi|257388502|ref|YP_003178275.1| - 0.011 16.3 9.2 1.5 9.4 0.5 4.4 4 1 0 4 4 3 0 Inhibitor of growth proteins N-terminal histone-binding DASH_Dad3 PF08656.10 gi|257388502|ref|YP_003178275.1| - 0.012 15.7 9.7 0.33 11.1 0.5 5.3 3 2 1 4 4 4 0 DASH complex subunit Dad3 Laminin_II PF06009.12 gi|257388502|ref|YP_003178275.1| - 0.012 15.6 38.0 0.28 11.2 3.5 5.3 3 2 2 5 5 5 0 Laminin Domain II CR6_interact PF10147.9 gi|257388502|ref|YP_003178275.1| - 0.019 14.7 1.8 0.019 14.7 1.8 3.7 3 1 0 3 3 3 0 Growth arrest and DNA-damage-inducible proteins-interacting protein 1 DUF16 PF01519.16 gi|257388502|ref|YP_003178275.1| - 0.02 15.4 22.3 5.9 7.4 3.2 5.3 3 2 1 5 5 5 0 Protein of unknown function DUF16 ZapB PF06005.12 gi|257388502|ref|YP_003178275.1| - 0.021 15.3 0.0 0.021 15.3 0.0 4.8 3 1 2 5 5 5 0 Cell division protein ZapB DUF2203 PF09969.9 gi|257388502|ref|YP_003178275.1| - 0.036 14.8 29.0 1.1 10.1 4.8 5.1 2 2 2 4 4 4 0 Uncharacterized conserved protein (DUF2203) AAA_13 PF13166.6 gi|257388502|ref|YP_003178275.1| - 0.051 12.2 31.2 0.013 14.1 7.5 2.8 1 1 2 3 3 3 0 AAA domain Tox-REase-7 PF15649.6 gi|257388502|ref|YP_003178275.1| - 0.055 13.8 1.6 0.26 11.6 1.3 2.4 1 1 0 1 1 1 0 Restriction endonuclease fold toxin 7 BLOC1_2 PF10046.9 gi|257388502|ref|YP_003178275.1| - 0.057 13.7 26.0 1.5 9.2 1.6 5.9 3 2 3 6 6 6 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DASH_Duo1 PF08651.10 gi|257388502|ref|YP_003178275.1| - 0.066 13.0 9.2 8.7 6.2 0.0 5.2 5 2 2 7 7 5 0 DASH complex subunit Duo1 Syntaxin_2 PF14523.6 gi|257388502|ref|YP_003178275.1| - 0.067 13.6 11.5 6.6 7.2 0.4 5.5 3 2 2 5 5 5 0 Syntaxin-like protein COG2 PF06148.11 gi|257388502|ref|YP_003178275.1| - 0.11 12.6 30.7 1.3 9.1 2.0 5.6 2 2 3 6 6 6 0 COG (conserved oligomeric Golgi) complex component, COG2 YscO PF07321.12 gi|257388502|ref|YP_003178275.1| - 0.12 12.3 0.2 0.12 12.3 0.2 5.2 2 2 2 4 4 4 0 Type III secretion protein YscO Fzo_mitofusin PF04799.13 gi|257388502|ref|YP_003178275.1| - 0.16 11.5 17.1 0.076 12.6 1.5 4.6 3 2 3 6 6 6 0 fzo-like conserved region NPV_P10 PF05531.12 gi|257388502|ref|YP_003178275.1| - 0.18 12.3 30.4 0.14 12.6 1.0 6.4 4 2 0 4 4 3 0 Nucleopolyhedrovirus P10 protein DUF4200 PF13863.6 gi|257388502|ref|YP_003178275.1| - 0.25 11.7 23.3 0.077 13.4 4.1 3.8 3 1 0 3 3 3 0 Domain of unknown function (DUF4200) DUF4061 PF13270.6 gi|257388502|ref|YP_003178275.1| - 0.31 11.4 11.8 0.68 10.3 0.4 4.7 3 3 1 4 4 3 0 Domain of unknown function (DUF4061) FH2 PF02181.23 gi|257388502|ref|YP_003178275.1| - 0.39 9.8 15.9 0.2 10.8 4.5 3.4 3 1 0 3 3 3 0 Formin Homology 2 Domain PI3K_P85_iSH2 PF16454.5 gi|257388502|ref|YP_003178275.1| - 0.5 9.9 9.9 0.04 13.5 0.7 3.2 2 2 1 3 3 3 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain GAS PF13851.6 gi|257388502|ref|YP_003178275.1| - 0.65 9.3 19.9 0.19 11.0 3.7 3.4 2 1 0 3 3 3 0 Growth-arrest specific micro-tubule binding Fib_alpha PF08702.10 gi|257388502|ref|YP_003178275.1| - 0.67 10.1 20.4 2.1 8.5 1.9 4.6 2 2 3 5 5 5 0 Fibrinogen alpha/beta chain family Snapin_Pallidin PF14712.6 gi|257388502|ref|YP_003178275.1| - 0.7 10.4 14.0 37 4.8 0.0 5.1 4 1 1 5 5 5 0 Snapin/Pallidin Cauli_AT PF03233.13 gi|257388502|ref|YP_003178275.1| - 0.81 9.6 12.1 1.6 8.6 0.1 4.3 3 2 2 5 5 5 0 Aphid transmission protein Med9 PF07544.13 gi|257388502|ref|YP_003178275.1| - 0.86 9.7 2.7 8.4 6.6 0.5 3.2 2 0 0 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 COG6 PF06419.11 gi|257388502|ref|YP_003178275.1| - 0.99 7.5 17.0 0.9 7.7 1.4 4.0 2 1 0 4 4 4 0 Conserved oligomeric complex COG6 Allexi_40kDa PF05549.11 gi|257388502|ref|YP_003178275.1| - 1.1 8.7 15.6 0.64 9.5 0.9 3.9 2 1 1 4 4 4 0 Allexivirus 40kDa protein VirB3 PF05101.13 gi|257388502|ref|YP_003178275.1| - 1.3 9.3 3.5 2.2 8.6 3.5 1.3 1 0 0 1 1 1 0 Type IV secretory pathway, VirB3-like protein DASH_Dad2 PF08654.10 gi|257388502|ref|YP_003178275.1| - 1.3 9.5 26.9 0.35 11.3 3.7 5.1 1 1 2 5 5 4 0 DASH complex subunit Dad2 T7SS_ESX_EspC PF10824.8 gi|257388502|ref|YP_003178275.1| - 1.4 9.4 43.2 1.4 9.4 3.3 6.4 2 1 3 5 5 5 0 Excreted virulence factor EspC, type VII ESX diderm DUF3450 PF11932.8 gi|257388502|ref|YP_003178275.1| - 1.4 8.1 38.8 2.9 7.1 2.8 5.1 2 1 3 5 5 5 0 Protein of unknown function (DUF3450) DUF489 PF04356.12 gi|257388502|ref|YP_003178275.1| - 1.6 8.7 10.3 4.2 7.3 1.4 3.8 2 1 2 4 4 4 0 Protein of unknown function (DUF489) GAT PF03127.14 gi|257388502|ref|YP_003178275.1| - 1.7 9.0 15.5 26 5.2 0.5 5.2 3 1 2 5 5 5 0 GAT domain DUF812 PF05667.11 gi|257388502|ref|YP_003178275.1| - 2.3 7.0 36.2 6.4 5.5 0.8 2.9 1 1 2 3 3 3 0 Protein of unknown function (DUF812) DASH_Dam1 PF08653.10 gi|257388502|ref|YP_003178275.1| - 2.5 7.9 7.7 6.6 6.6 0.1 4.9 6 1 1 7 7 4 0 DASH complex subunit Dam1 Seryl_tRNA_N PF02403.22 gi|257388502|ref|YP_003178275.1| - 3.2 8.0 27.2 7.6 6.8 0.2 5.5 2 2 2 5 5 5 0 Seryl-tRNA synthetase N-terminal domain V_ATPase_I PF01496.19 gi|257388502|ref|YP_003178275.1| - 3.8 5.3 21.9 0.34 8.8 1.9 3.1 1 1 1 3 3 3 0 V-type ATPase 116kDa subunit family Sec34 PF04136.15 gi|257388502|ref|YP_003178275.1| - 4.2 7.2 23.2 12 5.7 0.4 5.6 4 3 1 5 5 5 0 Sec34-like family HMMR_N PF15905.5 gi|257388502|ref|YP_003178275.1| - 4.4 6.7 26.1 1.8 8.0 0.3 3.9 1 1 2 4 4 4 0 Hyaluronan mediated motility receptor N-terminal FlgN PF05130.12 gi|257388502|ref|YP_003178275.1| - 4.4 7.8 29.5 9.1 6.8 1.0 4.3 1 1 3 5 5 5 0 FlgN protein YabA PF06156.13 gi|257388502|ref|YP_003178275.1| - 4.5 8.0 17.3 79 4.0 0.0 5.2 2 1 2 4 4 4 0 Initiation control protein YabA DUF4201 PF13870.6 gi|257388502|ref|YP_003178275.1| - 4.8 6.9 8.2 3.1 7.5 0.1 3.6 3 2 0 3 3 3 0 Domain of unknown function (DUF4201) HisKA PF00512.25 gi|257388502|ref|YP_003178275.1| - 6.5 6.9 11.8 1.6 8.8 0.1 4.9 4 2 0 4 4 4 0 His Kinase A (phospho-acceptor) domain Tho2 PF11262.8 gi|257388502|ref|YP_003178275.1| - 7.1 5.7 7.5 2.2 7.4 0.3 3.3 2 1 0 3 3 3 0 Transcription factor/nuclear export subunit protein 2 Fungal_TACC PF12709.7 gi|257388502|ref|YP_003178275.1| - 7.3 7.1 6.5 13 6.3 0.2 3.8 4 1 1 5 5 3 0 Fungal Transforming acidic coiled-coil (TACC) proteins Goodbye PF17109.5 gi|257388502|ref|YP_003178275.1| - 7.7 7.0 16.3 16 6.0 1.2 5.0 3 2 2 5 5 5 0 fungal STAND N-terminal Goodbye domain ISG65-75 PF11727.8 gi|257388502|ref|YP_003178275.1| - 9.8 5.3 34.8 1.6 7.9 8.1 3.8 2 1 2 4 4 4 0 Invariant surface glycoprotein Pyridox_ox_2 PF12900.7 gi|257388503|ref|YP_003178276.1| - 2.5e-19 69.7 0.0 2.8e-19 69.5 0.0 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Putative_PNPOx PF01243.20 gi|257388503|ref|YP_003178276.1| - 4e-05 23.7 0.0 5.1e-05 23.4 0.0 1.1 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase DoxX PF07681.12 gi|257388504|ref|YP_003178277.1| - 9.5e-11 42.2 6.9 9.5e-11 42.2 6.9 1.7 2 0 0 2 2 2 1 DoxX DoxD PF04173.13 gi|257388504|ref|YP_003178277.1| - 2.2e-06 27.7 5.7 0.00018 21.5 1.9 2.1 2 0 0 2 2 2 2 TQO small subunit DoxD VKG_Carbox PF05090.14 gi|257388504|ref|YP_003178277.1| - 0.042 12.7 1.9 1 8.1 1.7 2.0 1 1 1 2 2 2 0 Vitamin K-dependent gamma-carboxylase ParA PF10609.9 gi|257388506|ref|YP_003178279.1| - 4.5e-63 213.0 0.1 6.4e-63 212.5 0.1 1.2 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase DUF2249 PF10006.9 gi|257388506|ref|YP_003178279.1| - 3.2e-17 62.2 0.7 7.4e-17 61.0 0.7 1.7 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) CbiA PF01656.23 gi|257388506|ref|YP_003178279.1| - 6.3e-12 45.7 0.2 1.5e-11 44.5 0.0 1.7 2 0 0 2 2 2 1 CobQ/CobB/MinD/ParA nucleotide binding domain FeS_assembly_P PF01883.19 gi|257388506|ref|YP_003178279.1| - 6.3e-09 35.9 4.8 6.3e-09 35.9 4.8 2.2 3 0 0 3 3 3 1 Iron-sulfur cluster assembly protein AAA_31 PF13614.6 gi|257388506|ref|YP_003178279.1| - 3.1e-07 30.5 0.1 6.4e-06 26.2 0.1 2.2 2 0 0 2 2 2 1 AAA domain MipZ PF09140.11 gi|257388506|ref|YP_003178279.1| - 0.00024 20.5 0.9 0.00066 19.0 0.9 1.8 1 1 0 1 1 1 1 ATPase MipZ AAA_26 PF13500.6 gi|257388506|ref|YP_003178279.1| - 0.00085 19.2 0.1 0.038 13.8 0.0 2.3 2 0 0 2 2 2 1 AAA domain VirC1 PF07015.11 gi|257388506|ref|YP_003178279.1| - 0.0013 18.1 0.4 0.0022 17.3 0.0 1.5 2 0 0 2 2 2 1 VirC1 protein ArsA_ATPase PF02374.15 gi|257388506|ref|YP_003178279.1| - 0.024 13.8 1.3 0.36 10.0 0.1 2.5 2 1 1 3 3 3 0 Anion-transporting ATPase AAA_25 PF13481.6 gi|257388506|ref|YP_003178279.1| - 0.064 12.8 5.4 0.12 11.9 0.5 2.7 1 1 0 2 2 2 0 AAA domain YtkA PF13115.6 gi|257388506|ref|YP_003178279.1| - 0.11 13.1 0.8 2.5 8.8 0.1 2.5 2 0 0 2 2 2 0 YtkA-like HEAT_2 PF13646.6 gi|257388507|ref|YP_003178280.1| - 5.7e-24 84.3 27.8 1.3e-13 51.1 5.6 3.2 1 1 2 3 3 3 3 HEAT repeats HEAT PF02985.22 gi|257388507|ref|YP_003178280.1| - 5.6e-10 38.6 14.3 0.25 11.7 0.1 6.2 6 0 0 6 6 6 4 HEAT repeat Cnd1 PF12717.7 gi|257388507|ref|YP_003178280.1| - 1.3e-06 28.5 1.2 0.031 14.3 0.1 3.9 1 1 2 3 3 3 2 non-SMC mitotic condensation complex subunit 1 HEAT_EZ PF13513.6 gi|257388507|ref|YP_003178280.1| - 0.00011 22.6 13.2 0.82 10.2 0.6 5.5 5 1 0 5 5 5 2 HEAT-like repeat Adaptin_N PF01602.20 gi|257388507|ref|YP_003178280.1| - 0.0032 16.1 0.0 0.014 14.0 0.0 2.0 1 1 1 2 2 2 2 Adaptin N terminal region Vac14_Fab1_bd PF12755.7 gi|257388507|ref|YP_003178280.1| - 0.045 14.3 0.0 6.4 7.5 0.0 3.4 1 1 3 4 4 4 0 Vacuolar 14 Fab1-binding region HEAT_PBS PF03130.16 gi|257388507|ref|YP_003178280.1| - 0.57 11.0 10.7 5.5 8.0 0.1 5.2 5 0 0 5 5 5 0 PBS lyase HEAT-like repeat ALF PF03752.13 gi|257388507|ref|YP_003178280.1| - 1.3 9.0 11.1 1.8 8.6 0.0 4.6 3 1 0 4 4 4 0 Short repeats of unknown function DUF711 PF05167.12 gi|257388508|ref|YP_003178281.1| - 0.023 13.6 1.3 0.035 13.0 1.3 1.2 1 0 0 1 1 1 0 Uncharacterised ACR (DUF711) Borrelia_P13 PF05628.12 gi|257388508|ref|YP_003178281.1| - 0.28 11.1 5.2 0.37 10.8 0.9 2.3 2 0 0 2 2 2 0 Borrelia membrane protein P13 Nitrate_red_del PF02613.15 gi|257388509|ref|YP_003178282.1| - 1.4e-11 44.6 0.5 4e-11 43.1 0.5 1.8 1 1 0 1 1 1 1 Nitrate reductase delta subunit EB_dh PF09459.10 gi|257388510|ref|YP_003178283.1| - 7.5e-30 104.7 4.7 7.4e-16 58.9 0.4 2.1 1 1 1 2 2 2 2 Ethylbenzene dehydrogenase OppC_N PF12911.7 gi|257388510|ref|YP_003178283.1| - 0.024 14.6 1.1 0.058 13.4 0.0 2.0 2 0 0 2 2 2 0 N-terminal TM domain of oligopeptide transport permease C Transposase_20 PF02371.16 gi|257388510|ref|YP_003178283.1| - 0.12 12.7 0.3 0.28 11.5 0.3 1.6 1 0 0 1 1 1 0 Transposase IS116/IS110/IS902 family Fer4_11 PF13247.6 gi|257388511|ref|YP_003178284.1| - 5.3e-29 100.3 6.0 5.3e-29 100.3 6.0 1.8 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|257388511|ref|YP_003178284.1| - 7.5e-12 45.2 17.0 4.6e-05 23.4 3.5 3.3 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|257388511|ref|YP_003178284.1| - 7.3e-11 42.5 14.2 2.5e-05 24.7 3.6 3.5 1 1 3 4 4 4 4 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|257388511|ref|YP_003178284.1| - 2.8e-07 30.6 18.9 0.0061 16.7 6.1 3.4 2 1 1 3 3 3 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|257388511|ref|YP_003178284.1| - 0.00044 20.2 26.6 0.011 15.7 0.8 4.6 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_2 PF12797.7 gi|257388511|ref|YP_003178284.1| - 0.00048 20.1 30.4 0.0045 17.0 2.0 4.3 5 0 0 5 5 4 3 4Fe-4S binding domain Fer4 PF00037.27 gi|257388511|ref|YP_003178284.1| - 0.00092 18.9 29.4 0.013 15.3 2.6 5.6 5 0 0 5 5 5 3 4Fe-4S binding domain Fer4_17 PF13534.6 gi|257388511|ref|YP_003178284.1| - 0.0012 19.4 18.0 0.2 12.2 0.1 4.3 4 0 0 4 4 4 2 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|257388511|ref|YP_003178284.1| - 0.0048 17.3 1.2 0.0048 17.3 1.2 4.2 5 0 0 5 5 4 2 4Fe-4S binding domain Fer4_15 PF13459.6 gi|257388511|ref|YP_003178284.1| - 0.0084 16.8 10.7 0.23 12.2 0.1 3.8 4 0 0 4 4 3 2 4Fe-4S single cluster domain Fer4_13 PF13370.6 gi|257388511|ref|YP_003178284.1| - 0.015 15.8 0.1 0.015 15.8 0.1 3.9 3 1 0 3 3 3 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_21 PF14697.6 gi|257388511|ref|YP_003178284.1| - 0.024 14.7 2.0 0.024 14.7 2.0 3.0 4 0 0 4 4 3 0 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|257388511|ref|YP_003178284.1| - 0.18 12.8 33.2 0.39 11.7 5.7 4.3 4 0 0 4 4 4 0 4Fe-4S binding domain Fer4_8 PF13183.6 gi|257388511|ref|YP_003178284.1| - 0.82 10.2 19.7 2.8 8.5 9.9 4.1 2 1 2 4 4 4 0 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|257388511|ref|YP_003178284.1| - 3.5 8.6 25.1 6 7.9 0.8 4.2 2 1 1 3 3 3 0 4Fe-4S double cluster binding domain Molybdopterin PF00384.22 gi|257388512|ref|YP_003178285.1| - 7.6e-89 298.6 0.0 1.6e-88 297.5 0.0 1.5 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|257388512|ref|YP_003178285.1| - 5.7e-22 77.8 0.0 1.2e-21 76.8 0.0 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|257388512|ref|YP_003178285.1| - 0.0091 16.0 0.4 0.018 15.0 0.4 1.5 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain TAT_signal PF10518.9 gi|257388512|ref|YP_003178285.1| - 0.15 11.9 1.9 0.29 11.0 1.9 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Cytochrom_B_N_2 PF13631.6 gi|257388514|ref|YP_003178287.1| - 4.2e-47 160.3 0.8 4.2e-47 160.3 0.8 2.6 3 0 0 3 3 3 1 Cytochrome b(N-terminal)/b6/petB Cytochrome_B PF00033.19 gi|257388514|ref|YP_003178287.1| - 3.7e-33 114.9 12.0 4.3e-31 108.2 12.0 2.4 1 1 0 1 1 1 1 Cytochrome b/b6/petB Cytochrom_B_C PF00032.17 gi|257388514|ref|YP_003178287.1| - 5e-08 33.2 0.4 2.8e-07 30.7 0.4 2.4 1 0 0 1 1 1 1 Cytochrome b(C-terminal)/b6/petD DUF4405 PF14358.6 gi|257388514|ref|YP_003178287.1| - 0.00066 20.2 7.4 0.00066 20.2 7.4 3.6 4 1 0 4 4 4 1 Domain of unknown function (DUF4405) Mntp PF02659.15 gi|257388514|ref|YP_003178287.1| - 0.16 11.7 0.0 0.16 11.7 0.0 2.9 4 0 0 4 4 4 0 Putative manganese efflux pump Rieske PF00355.26 gi|257388515|ref|YP_003178288.1| - 2e-10 40.5 0.0 3.4e-10 39.7 0.0 1.5 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain MS_channel PF00924.18 gi|257388517|ref|YP_003178290.1| - 2.9e-38 131.5 0.0 4e-38 131.0 0.0 1.1 1 0 0 1 1 1 1 Mechanosensitive ion channel YwiC PF14256.6 gi|257388517|ref|YP_003178290.1| - 0.085 13.2 4.1 0.069 13.5 2.5 1.6 1 1 0 1 1 1 0 YwiC-like protein A2L_zn_ribbon PF08792.10 gi|257388518|ref|YP_003178291.1| - 0.0013 18.4 0.0 1.6 8.5 0.0 2.3 2 0 0 2 2 2 2 A2L zinc ribbon domain HscB_4_cys PF18256.1 gi|257388518|ref|YP_003178291.1| - 0.0013 18.5 1.1 0.95 9.3 0.1 2.4 2 0 0 2 2 2 2 Co-chaperone HscB tetracysteine metal binding motif PhnA_Zn_Ribbon PF08274.12 gi|257388518|ref|YP_003178291.1| - 0.0024 17.8 0.2 2.2 8.3 0.0 2.2 2 0 0 2 2 2 2 PhnA Zinc-Ribbon OrfB_Zn_ribbon PF07282.11 gi|257388518|ref|YP_003178291.1| - 0.0048 16.8 1.1 0.3 11.0 0.1 2.1 1 1 1 2 2 2 2 Putative transposase DNA-binding domain zf-NADH-PPase PF09297.11 gi|257388518|ref|YP_003178291.1| - 0.0083 15.8 1.7 0.19 11.4 0.1 2.4 2 0 0 2 2 2 1 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_9 PF14369.6 gi|257388518|ref|YP_003178291.1| - 0.022 15.0 2.7 0.2 11.9 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon Zn-ribbon_8 PF09723.10 gi|257388518|ref|YP_003178291.1| - 0.078 13.1 4.4 0.19 11.8 3.1 2.1 1 1 1 2 2 2 0 Zinc ribbon domain UPF0547 PF10571.9 gi|257388518|ref|YP_003178291.1| - 0.11 12.6 3.3 1.1 9.4 0.4 2.3 2 0 0 2 2 2 0 Uncharacterised protein family UPF0547 IF-2B PF01008.17 gi|257388519|ref|YP_003178292.1| - 2.5e-36 125.3 0.4 3.1e-36 125.1 0.4 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family THDPS_N_2 PF14805.6 gi|257388519|ref|YP_003178292.1| - 0.0044 17.2 2.0 0.011 16.0 1.8 1.9 1 1 0 1 1 1 1 Tetrahydrodipicolinate N-succinyltransferase N-terminal PLDc_2 PF13091.6 gi|257388519|ref|YP_003178292.1| - 0.14 12.1 0.0 0.3 11.0 0.0 1.7 1 1 0 1 1 1 0 PLD-like domain Pilin_N PF07790.11 gi|257388520|ref|YP_003178293.1| - 4.5e-07 30.7 1.6 5e-07 30.6 0.6 1.6 2 0 0 2 2 2 1 Archaeal Type IV pilin, N-terminal DoxX PF07681.12 gi|257388521|ref|YP_003178294.1| - 4.9e-08 33.5 6.2 4.9e-08 33.5 6.2 3.7 2 1 0 2 2 2 1 DoxX TrbC PF04956.13 gi|257388521|ref|YP_003178294.1| - 2.3 8.5 13.2 7.9 6.8 0.7 4.1 4 1 0 4 4 4 0 TrbC/VIRB2 family DoxD PF04173.13 gi|257388521|ref|YP_003178294.1| - 6.9 6.5 11.2 0.2 11.5 1.8 3.0 3 2 0 3 3 3 0 TQO small subunit DoxD Acetyltransf_10 PF13673.7 gi|257388522|ref|YP_003178295.1| - 3.3e-14 52.9 0.2 4.1e-14 52.6 0.2 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|257388522|ref|YP_003178295.1| - 8.8e-14 51.7 0.3 1.6e-13 50.9 0.3 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|257388522|ref|YP_003178295.1| - 6.3e-13 49.0 0.4 8.8e-13 48.5 0.4 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family FR47 PF08445.10 gi|257388522|ref|YP_003178295.1| - 1.4e-10 41.0 0.0 2.8e-10 40.0 0.0 1.5 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_8 PF13523.6 gi|257388522|ref|YP_003178295.1| - 0.00093 18.9 0.1 0.0066 16.1 0.0 2.1 2 1 0 2 2 2 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|257388522|ref|YP_003178295.1| - 0.0032 17.5 0.1 0.0083 16.2 0.1 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|257388522|ref|YP_003178295.1| - 0.0064 16.6 0.1 0.02 15.0 0.1 1.9 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|257388522|ref|YP_003178295.1| - 0.097 12.8 0.0 0.16 12.1 0.0 1.5 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase Transport_MerF PF11431.8 gi|257388523|ref|YP_003178296.1| - 0.078 12.9 4.7 1.1 9.2 1.5 2.5 2 0 0 2 2 2 0 Membrane transport protein MerF DUF4131 PF13567.6 gi|257388523|ref|YP_003178296.1| - 0.12 12.0 2.3 0.36 10.5 0.2 2.0 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) DUF2207 PF09972.9 gi|257388523|ref|YP_003178296.1| - 0.36 9.5 2.8 0.27 9.9 0.1 1.7 1 1 1 2 2 2 0 Predicted membrane protein (DUF2207) DNA_primase_S PF01896.19 gi|257388524|ref|YP_003178297.1| - 1.3e-21 77.4 0.0 3.3e-21 76.1 0.0 1.6 1 1 0 1 1 1 1 DNA primase small subunit Metal_resist PF13801.6 gi|257388525|ref|YP_003178298.1| - 0.0047 17.1 1.9 0.0047 17.1 1.9 2.0 2 1 1 3 3 3 1 Heavy-metal resistance DUF4611 PF15387.6 gi|257388525|ref|YP_003178298.1| - 5.1 7.4 8.5 0.42 10.9 1.5 2.4 2 0 0 2 2 2 0 Domain of unknown function (DUF4611) Trypsin_2 PF13365.6 gi|257388526|ref|YP_003178299.1| - 5.6e-26 92.2 5.2 1.2e-25 91.2 5.2 1.6 1 0 0 1 1 1 1 Trypsin-like peptidase domain PDZ_2 PF13180.6 gi|257388526|ref|YP_003178299.1| - 9.2e-13 48.3 0.3 2.6e-12 46.9 0.3 1.8 1 0 0 1 1 1 1 PDZ domain Trypsin PF00089.26 gi|257388526|ref|YP_003178299.1| - 4.2e-11 43.1 0.2 9.8e-11 41.9 0.2 1.5 1 1 0 1 1 1 1 Trypsin Pico_P2A PF00947.19 gi|257388526|ref|YP_003178299.1| - 0.025 14.6 0.4 0.071 13.1 0.4 1.7 1 0 0 1 1 1 0 Picornavirus core protein 2A PDZ PF00595.24 gi|257388526|ref|YP_003178299.1| - 0.048 14.0 0.0 7.9 6.9 0.0 2.7 2 0 0 2 2 2 0 PDZ domain SLATT_3 PF18184.1 gi|257388527|ref|YP_003178300.1| - 0.074 13.2 1.3 0.089 12.9 1.3 1.0 1 0 0 1 1 1 0 SMODS and SLOG-associating 2TM effector domain 3 DUF3487 PF11990.8 gi|257388527|ref|YP_003178300.1| - 0.096 12.6 2.0 0.11 12.3 2.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3487) PhoR PF11808.8 gi|257388527|ref|YP_003178300.1| - 0.17 12.3 2.5 0.26 11.7 2.5 1.3 1 0 0 1 1 1 0 Phosphate regulon sensor protein PhoR DUF3043 PF11241.8 gi|257388527|ref|YP_003178300.1| - 1 9.4 2.4 1.2 9.1 2.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3043) DUF2207 PF09972.9 gi|257388527|ref|YP_003178300.1| - 1.9 7.2 3.1 2.2 6.9 3.1 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) MTS PF05175.14 gi|257388528|ref|YP_003178301.1| - 6.1e-11 42.2 0.0 8.5e-11 41.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain UPF0020 PF01170.18 gi|257388528|ref|YP_003178301.1| - 4.4e-10 39.6 0.2 2.7e-09 37.0 0.2 1.9 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_25 PF13649.6 gi|257388528|ref|YP_003178301.1| - 4.4e-10 40.1 0.1 1e-09 38.9 0.0 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|257388528|ref|YP_003178301.1| - 7.3e-09 36.2 0.2 5e-08 33.5 0.0 2.1 2 0 0 2 2 2 1 Methyltransferase domain PrmA PF06325.13 gi|257388528|ref|YP_003178301.1| - 6e-08 32.4 0.0 8.3e-08 32.0 0.0 1.2 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_31 PF13847.6 gi|257388528|ref|YP_003178301.1| - 1e-06 28.7 0.0 1.6e-06 28.0 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|257388528|ref|YP_003178301.1| - 3.8e-06 26.7 0.0 5.2e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_32 PF13679.6 gi|257388528|ref|YP_003178301.1| - 0.00032 20.7 0.0 0.00034 20.6 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|257388528|ref|YP_003178301.1| - 0.0023 17.3 0.0 0.0035 16.7 0.0 1.3 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_12 PF08242.12 gi|257388528|ref|YP_003178301.1| - 0.0039 17.9 0.0 0.0063 17.2 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|257388528|ref|YP_003178301.1| - 0.0081 16.0 0.0 0.0093 15.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|257388528|ref|YP_003178301.1| - 0.01 15.4 0.0 0.014 15.0 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltransf_9 PF08003.11 gi|257388528|ref|YP_003178301.1| - 0.028 13.4 0.0 0.038 12.9 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) N6_Mtase PF02384.16 gi|257388528|ref|YP_003178301.1| - 0.03 13.6 0.0 0.069 12.4 0.0 1.6 1 1 0 1 1 1 0 N-6 DNA Methylase Methyltransf_18 PF12847.7 gi|257388528|ref|YP_003178301.1| - 0.049 13.6 0.0 0.07 13.1 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Rhomboid PF01694.22 gi|257388529|ref|YP_003178302.1| - 7.1e-10 39.1 14.2 7.1e-10 39.1 14.2 2.3 2 1 0 2 2 2 1 Rhomboid family HxlR PF01638.17 gi|257388530|ref|YP_003178303.1| - 8.6e-24 83.2 0.0 1e-23 83.0 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix MarR_2 PF12802.7 gi|257388530|ref|YP_003178303.1| - 5.5e-05 23.0 0.1 7.9e-05 22.5 0.1 1.2 1 0 0 1 1 1 1 MarR family HTH_34 PF13601.6 gi|257388530|ref|YP_003178303.1| - 0.00042 20.4 0.0 0.00057 20.0 0.0 1.1 1 0 0 1 1 1 1 Winged helix DNA-binding domain Trp_repressor PF01371.19 gi|257388530|ref|YP_003178303.1| - 0.00096 19.2 0.0 0.0015 18.7 0.0 1.2 1 0 0 1 1 1 1 Trp repressor protein PadR PF03551.14 gi|257388530|ref|YP_003178303.1| - 0.0035 17.3 0.1 0.0054 16.7 0.1 1.3 1 1 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_20 PF12840.7 gi|257388530|ref|YP_003178303.1| - 0.0044 17.1 0.2 0.011 15.8 0.1 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|257388530|ref|YP_003178303.1| - 0.0084 16.0 0.0 0.013 15.4 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|257388530|ref|YP_003178303.1| - 0.025 14.5 0.0 0.034 14.1 0.0 1.2 1 0 0 1 1 1 0 MarR family TrmB PF01978.19 gi|257388530|ref|YP_003178303.1| - 0.083 12.8 0.0 0.11 12.4 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Replic_Relax PF13814.6 gi|257388530|ref|YP_003178303.1| - 0.088 12.9 0.0 0.1 12.6 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation HTH_45 PF14947.6 gi|257388530|ref|YP_003178303.1| - 0.088 12.8 0.0 0.12 12.3 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix RepL PF05732.11 gi|257388530|ref|YP_003178303.1| - 0.093 12.2 0.0 0.18 11.3 0.0 1.4 1 1 0 1 1 1 0 Firmicute plasmid replication protein (RepL) TFIIE_alpha PF02002.17 gi|257388530|ref|YP_003178303.1| - 0.1 12.5 0.0 0.12 12.3 0.0 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit DUF2300 PF10062.9 gi|257388530|ref|YP_003178303.1| - 0.1 12.6 1.0 0.19 11.8 1.0 1.5 1 1 0 1 1 1 0 Predicted secreted protein (DUF2300) DUF4364 PF14277.6 gi|257388530|ref|YP_003178303.1| - 0.13 12.0 0.0 0.17 11.6 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) DUF2795 PF11387.8 gi|257388531|ref|YP_003178304.1| - 0.046 13.9 0.5 1.4 9.2 0.1 2.7 2 1 0 2 2 2 0 Protein of unknown function (DUF2795) Glycos_transf_2 PF00535.26 gi|257388532|ref|YP_003178305.1| - 1.6e-16 60.6 0.0 2.3e-16 60.1 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|257388532|ref|YP_003178305.1| - 5.2e-13 49.4 0.1 7.6e-13 48.9 0.1 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|257388532|ref|YP_003178305.1| - 2e-07 31.4 0.0 3.5e-07 30.7 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 NTP_transf_3 PF12804.7 gi|257388532|ref|YP_003178305.1| - 9.8e-05 22.8 0.0 0.00019 21.8 0.0 1.5 1 0 0 1 1 1 1 MobA-like NTP transferase domain Glyco_transf_21 PF13506.6 gi|257388532|ref|YP_003178305.1| - 0.038 13.5 0.0 0.065 12.7 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 21 UPF0060 PF02694.15 gi|257388532|ref|YP_003178305.1| - 0.22 11.8 5.7 0.16 12.2 3.9 1.6 2 0 0 2 2 2 0 Uncharacterised BCR, YnfA/UPF0060 family YSIRK_signal PF04650.17 gi|257388532|ref|YP_003178305.1| - 1.4 8.9 5.0 2.6 8.0 5.0 1.5 1 0 0 1 1 1 0 YSIRK type signal peptide HATPase_c PF02518.26 gi|257388533|ref|YP_003178306.1| - 3.8e-19 69.2 0.0 7.8e-19 68.2 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|257388533|ref|YP_003178306.1| - 7.6e-11 42.2 0.1 1.9e-10 41.0 0.1 1.7 1 0 0 1 1 1 1 PAS fold PAS_9 PF13426.7 gi|257388533|ref|YP_003178306.1| - 7.7e-08 32.5 0.0 1.6e-07 31.5 0.0 1.6 1 0 0 1 1 1 1 PAS domain HATPase_c_2 PF13581.6 gi|257388533|ref|YP_003178306.1| - 2.8e-07 30.5 0.0 8.8e-07 28.9 0.0 1.9 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain GAF_3 PF13492.6 gi|257388533|ref|YP_003178306.1| - 8.8e-07 29.3 0.0 1.6e-06 28.5 0.0 1.5 1 0 0 1 1 1 1 GAF domain GAF PF01590.26 gi|257388533|ref|YP_003178306.1| - 0.00015 22.4 0.0 0.00041 21.0 0.0 1.8 1 0 0 1 1 1 1 GAF domain HisKA_4TM PF16926.5 gi|257388533|ref|YP_003178306.1| - 0.00019 21.0 0.1 0.00037 20.1 0.1 1.4 1 0 0 1 1 1 1 Archaeal 4TM region of histidine kinase HATPase_c_5 PF14501.6 gi|257388533|ref|YP_003178306.1| - 0.00077 19.3 0.0 0.0016 18.3 0.0 1.5 1 0 0 1 1 1 1 GHKL domain PAS PF00989.25 gi|257388533|ref|YP_003178306.1| - 0.00096 19.1 0.0 0.0058 16.6 0.0 2.1 2 0 0 2 2 2 1 PAS fold GAF_2 PF13185.6 gi|257388533|ref|YP_003178306.1| - 0.0031 17.8 0.0 0.0092 16.3 0.0 1.8 1 0 0 1 1 1 1 GAF domain PAS_8 PF13188.7 gi|257388533|ref|YP_003178306.1| - 0.007 16.4 0.0 0.19 11.8 0.0 2.9 2 0 0 2 2 2 1 PAS domain Diphthamide_syn PF01866.17 gi|257388534|ref|YP_003178307.1| - 1.2e-76 258.0 0.0 1.5e-76 257.8 0.0 1.0 1 0 0 1 1 1 1 Putative diphthamide synthesis protein GTP-bdg_N PF13167.6 gi|257388534|ref|YP_003178307.1| - 0.027 15.1 0.0 1 10.0 0.0 2.4 1 1 1 2 2 2 0 GTP-binding GTPase N-terminal Com_YlbF PF06133.11 gi|257388536|ref|YP_003178309.1| - 2.2e-20 73.2 11.2 2.8e-20 72.9 11.2 1.0 1 0 0 1 1 1 1 Control of competence regulator ComK, YlbF/YmcA DUF3080 PF11279.8 gi|257388536|ref|YP_003178309.1| - 0.0025 17.1 2.0 0.0028 16.9 2.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3080) DUF5112 PF17139.4 gi|257388536|ref|YP_003178309.1| - 0.0079 15.7 0.3 0.0091 15.5 0.3 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF5112) DUF4976 PF16347.5 gi|257388536|ref|YP_003178309.1| - 0.036 14.3 0.4 0.053 13.8 0.4 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4976) FTA4 PF13093.6 gi|257388536|ref|YP_003178309.1| - 0.044 13.7 2.5 0.051 13.5 2.5 1.1 1 0 0 1 1 1 0 Kinetochore complex Fta4 of Sim4 subunit, or CENP-50 Utp11 PF03998.13 gi|257388536|ref|YP_003178309.1| - 0.15 11.9 2.3 0.17 11.8 2.3 1.1 1 0 0 1 1 1 0 Utp11 protein CwsA PF10814.8 gi|257388536|ref|YP_003178309.1| - 0.37 11.0 1.3 0.6 10.3 0.6 1.6 1 1 1 2 2 2 0 Cell wall synthesis protein CwsA Arch_flagellin PF01917.16 gi|257388537|ref|YP_003178310.1| - 7.1e-34 117.4 11.8 8.6e-34 117.1 11.8 1.1 1 0 0 1 1 1 1 Archaebacterial flagellin Lactamase_B_2 PF12706.7 gi|257388538|ref|YP_003178311.1| - 3e-19 69.3 1.6 4.2e-19 68.9 1.6 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|257388538|ref|YP_003178311.1| - 6.2e-13 49.0 0.1 8.1e-13 48.6 0.1 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain DUF3038 PF11237.8 gi|257388538|ref|YP_003178311.1| - 0.064 13.3 0.0 0.091 12.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3038) MscS_porin PF12795.7 gi|257388539|ref|YP_003178312.1| - 2e-06 27.6 2.2 2e-06 27.6 2.2 2.5 2 1 0 2 2 1 1 Mechanosensitive ion channel porin domain EzrA PF06160.12 gi|257388539|ref|YP_003178312.1| - 6.3e-06 24.7 2.9 9e-06 24.1 2.9 1.2 1 0 0 1 1 1 1 Septation ring formation regulator, EzrA Spc7 PF08317.11 gi|257388539|ref|YP_003178312.1| - 1.9e-05 23.7 7.5 8.1e-05 21.7 0.7 2.1 1 1 1 2 2 2 1 Spc7 kinetochore protein Laminin_II PF06009.12 gi|257388539|ref|YP_003178312.1| - 0.00018 21.5 1.9 0.00018 21.5 1.9 1.8 2 0 0 2 2 1 1 Laminin Domain II APG6_N PF17675.1 gi|257388539|ref|YP_003178312.1| - 0.00023 21.7 22.6 0.0034 17.9 5.1 3.1 1 1 1 3 3 2 2 Apg6 coiled-coil region FlaC_arch PF05377.11 gi|257388539|ref|YP_003178312.1| - 0.0003 21.1 14.9 0.061 13.7 0.9 5.0 1 1 2 4 4 3 2 Flagella accessory protein C (FlaC) Baculo_PEP_C PF04513.12 gi|257388539|ref|YP_003178312.1| - 0.00036 20.6 0.6 0.57 10.2 0.2 2.3 1 1 1 2 2 2 2 Baculovirus polyhedron envelope protein, PEP, C terminus HMMR_N PF15905.5 gi|257388539|ref|YP_003178312.1| - 0.0004 20.0 6.2 0.00059 19.4 6.2 1.3 1 0 0 1 1 1 1 Hyaluronan mediated motility receptor N-terminal THOC7 PF05615.13 gi|257388539|ref|YP_003178312.1| - 0.00048 20.4 1.6 0.00048 20.4 1.6 2.8 1 1 1 2 2 2 1 Tho complex subunit 7 DUF4201 PF13870.6 gi|257388539|ref|YP_003178312.1| - 0.00071 19.4 0.1 0.0012 18.6 0.1 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4201) DUF1664 PF07889.12 gi|257388539|ref|YP_003178312.1| - 0.00088 19.3 7.1 0.005 16.9 2.1 2.7 1 1 1 2 2 2 2 Protein of unknown function (DUF1664) Filament PF00038.21 gi|257388539|ref|YP_003178312.1| - 0.0011 18.6 8.5 0.0017 18.0 7.8 1.6 1 1 0 1 1 1 1 Intermediate filament protein AAA_13 PF13166.6 gi|257388539|ref|YP_003178312.1| - 0.0013 17.5 5.6 0.0017 17.1 5.6 1.2 1 0 0 1 1 1 1 AAA domain MCPsignal PF00015.21 gi|257388539|ref|YP_003178312.1| - 0.0036 17.1 3.1 0.0049 16.7 1.2 2.1 1 1 1 2 2 2 1 Methyl-accepting chemotaxis protein (MCP) signalling domain NPV_P10 PF05531.12 gi|257388539|ref|YP_003178312.1| - 0.0058 17.1 8.9 0.26 11.8 1.3 3.5 1 1 2 3 3 3 1 Nucleopolyhedrovirus P10 protein Dor1 PF04124.12 gi|257388539|ref|YP_003178312.1| - 0.0062 15.3 1.7 0.53 8.9 0.2 2.1 1 1 1 2 2 2 1 Dor1-like family FH2 PF02181.23 gi|257388539|ref|YP_003178312.1| - 0.0065 15.6 3.5 0.01 15.0 2.4 1.7 1 1 1 2 2 2 1 Formin Homology 2 Domain DUF1090 PF06476.12 gi|257388539|ref|YP_003178312.1| - 0.0078 16.3 6.0 1.1 9.4 0.3 2.9 1 1 1 2 2 2 2 Protein of unknown function (DUF1090) DUF948 PF06103.11 gi|257388539|ref|YP_003178312.1| - 0.008 16.4 5.1 0.095 13.0 1.6 3.2 1 1 1 2 2 2 2 Bacterial protein of unknown function (DUF948) MerR-DNA-bind PF09278.11 gi|257388539|ref|YP_003178312.1| - 0.0083 16.6 0.8 0.027 15.0 0.8 1.9 1 0 0 1 1 1 1 MerR, DNA binding Osmo_CC PF08946.10 gi|257388539|ref|YP_003178312.1| - 0.011 15.9 5.2 0.011 15.9 5.2 3.8 2 1 1 3 3 2 0 Osmosensory transporter coiled coil Cluap1 PF10234.9 gi|257388539|ref|YP_003178312.1| - 0.013 14.9 8.2 0.31 10.4 1.0 2.4 1 1 1 2 2 2 0 Clusterin-associated protein-1 ATG16 PF08614.11 gi|257388539|ref|YP_003178312.1| - 0.014 15.7 12.4 0.032 14.5 11.3 2.2 1 1 0 1 1 1 0 Autophagy protein 16 (ATG16) DUF5082 PF16888.5 gi|257388539|ref|YP_003178312.1| - 0.014 15.7 7.5 1.5 9.2 0.6 3.7 1 1 0 2 2 2 0 Domain of unknown function (DUF5082) TraF_2 PF13729.6 gi|257388539|ref|YP_003178312.1| - 0.017 14.5 11.0 0.75 9.1 4.8 2.4 1 1 1 2 2 2 0 F plasmid transfer operon, TraF, protein ApoLp-III PF07464.11 gi|257388539|ref|YP_003178312.1| - 0.018 15.1 3.3 0.36 10.9 0.1 2.5 1 1 1 2 2 2 0 Apolipophorin-III precursor (apoLp-III) LPP PF04728.13 gi|257388539|ref|YP_003178312.1| - 0.02 15.3 10.6 0.35 11.3 0.5 4.6 2 2 1 4 4 4 0 Lipoprotein leucine-zipper DUF745 PF05335.13 gi|257388539|ref|YP_003178312.1| - 0.02 14.6 1.5 0.02 14.6 1.5 1.9 2 0 0 2 2 1 0 Protein of unknown function (DUF745) Atg14 PF10186.9 gi|257388539|ref|YP_003178312.1| - 0.025 13.7 0.2 0.042 12.9 0.2 1.3 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 TPR_MLP1_2 PF07926.12 gi|257388539|ref|YP_003178312.1| - 0.025 14.6 8.4 0.65 10.1 0.9 2.8 2 1 0 2 2 2 0 TPR/MLP1/MLP2-like protein Lebercilin PF15619.6 gi|257388539|ref|YP_003178312.1| - 0.034 13.8 0.5 0.11 12.2 0.1 1.8 1 1 0 1 1 1 0 Ciliary protein causing Leber congenital amaurosis disease DUF724 PF05266.14 gi|257388539|ref|YP_003178312.1| - 0.039 13.8 0.5 0.039 13.8 0.5 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF724) AIP3 PF03915.13 gi|257388539|ref|YP_003178312.1| - 0.045 12.8 10.0 0.093 11.8 10.1 1.5 1 1 0 1 1 1 0 Actin interacting protein 3 COG2 PF06148.11 gi|257388539|ref|YP_003178312.1| - 0.054 13.6 7.5 2.1 8.4 1.4 2.9 1 1 1 2 2 2 0 COG (conserved oligomeric Golgi) complex component, COG2 Spectrin PF00435.21 gi|257388539|ref|YP_003178312.1| - 0.056 13.9 7.2 0.17 12.4 1.3 2.6 1 1 2 3 3 3 0 Spectrin repeat Prefoldin PF02996.17 gi|257388539|ref|YP_003178312.1| - 0.057 13.3 8.2 0.73 9.8 0.3 3.7 2 2 2 4 4 4 0 Prefoldin subunit WXG100 PF06013.12 gi|257388539|ref|YP_003178312.1| - 0.058 13.6 2.8 0.22 11.8 0.5 2.9 1 1 2 3 3 3 0 Proteins of 100 residues with WXG Cob_adeno_trans PF01923.18 gi|257388539|ref|YP_003178312.1| - 0.06 13.5 4.9 0.82 9.8 1.8 2.4 1 1 1 2 2 2 0 Cobalamin adenosyltransferase TMPIT PF07851.13 gi|257388539|ref|YP_003178312.1| - 0.06 12.6 1.3 0.11 11.8 0.5 1.6 1 1 0 1 1 1 0 TMPIT-like protein IFT57 PF10498.9 gi|257388539|ref|YP_003178312.1| - 0.063 12.2 12.0 0.67 8.9 12.0 2.2 1 1 0 1 1 1 0 Intra-flagellar transport protein 57 RmuC PF02646.16 gi|257388539|ref|YP_003178312.1| - 0.074 12.2 4.4 1.9 7.6 0.2 2.7 1 1 2 3 3 3 0 RmuC family DUF3829 PF12889.7 gi|257388539|ref|YP_003178312.1| - 0.074 12.5 1.0 4.1 6.8 0.1 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF3829) SPATA24 PF15175.6 gi|257388539|ref|YP_003178312.1| - 0.078 12.9 1.3 0.15 11.9 1.3 1.5 1 0 0 1 1 1 0 Spermatogenesis-associated protein 24 CENP-F_leu_zip PF10473.9 gi|257388539|ref|YP_003178312.1| - 0.079 13.0 11.4 0.88 9.6 10.7 2.6 1 1 1 2 2 2 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Fib_alpha PF08702.10 gi|257388539|ref|YP_003178312.1| - 0.08 13.1 1.7 6.8 6.9 0.1 2.4 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family YlqD PF11068.8 gi|257388539|ref|YP_003178312.1| - 0.083 13.3 1.9 0.35 11.2 0.6 2.3 1 1 1 2 2 2 0 YlqD protein Lip_prot_lig_C PF10437.9 gi|257388539|ref|YP_003178312.1| - 0.093 12.7 2.8 0.42 10.6 0.3 2.8 2 1 1 3 3 3 0 Bacterial lipoate protein ligase C-terminus TTKRSYEDQ PF10212.9 gi|257388539|ref|YP_003178312.1| - 0.094 11.7 1.5 0.13 11.2 1.5 1.2 1 0 0 1 1 1 0 Predicted coiled-coil domain-containing protein Swi5 PF07061.11 gi|257388539|ref|YP_003178312.1| - 0.11 12.6 3.6 13 5.9 0.1 3.2 2 1 0 2 2 2 0 Swi5 Med9 PF07544.13 gi|257388539|ref|YP_003178312.1| - 0.11 12.6 2.9 0.93 9.6 1.4 2.7 1 1 1 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 DUF2353 PF09789.9 gi|257388539|ref|YP_003178312.1| - 0.13 11.6 4.9 0.047 13.0 1.5 1.7 1 1 1 2 2 2 0 Uncharacterized coiled-coil protein (DUF2353) APG17 PF04108.12 gi|257388539|ref|YP_003178312.1| - 0.14 11.3 7.2 1.3 8.0 0.8 2.0 1 1 1 2 2 2 0 Autophagy protein Apg17 DUF3450 PF11932.8 gi|257388539|ref|YP_003178312.1| - 0.14 11.4 5.9 0.21 10.8 4.6 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF3450) BLOC1_2 PF10046.9 gi|257388539|ref|YP_003178312.1| - 0.14 12.5 10.5 1.2 9.4 1.5 3.3 1 1 2 3 3 3 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 SpecificRecomb PF10136.9 gi|257388539|ref|YP_003178312.1| - 0.15 10.4 0.3 0.54 8.5 0.1 1.6 1 1 1 2 2 2 0 Site-specific recombinase Nup54 PF13874.6 gi|257388539|ref|YP_003178312.1| - 0.16 12.0 0.5 3.9 7.6 0.0 2.7 2 1 0 2 2 2 0 Nucleoporin complex subunit 54 RPW8 PF05659.11 gi|257388539|ref|YP_003178312.1| - 0.17 11.6 1.4 14 5.3 0.1 2.5 1 1 1 2 2 2 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 ZapB PF06005.12 gi|257388539|ref|YP_003178312.1| - 0.19 12.2 7.8 1.3 9.5 1.1 3.1 1 1 1 2 2 2 0 Cell division protein ZapB H-kinase_dim PF02895.14 gi|257388539|ref|YP_003178312.1| - 0.21 12.0 4.9 5.2 7.5 4.9 2.7 1 1 0 1 1 1 0 Signal transducing histidine kinase, homodimeric domain COG6 PF06419.11 gi|257388539|ref|YP_003178312.1| - 0.22 9.7 3.1 3.2 5.9 0.3 2.3 1 1 1 2 2 2 0 Conserved oligomeric complex COG6 ALIX_LYPXL_bnd PF13949.6 gi|257388539|ref|YP_003178312.1| - 0.25 10.6 9.7 0.83 8.9 2.4 1.8 1 1 0 2 2 2 0 ALIX V-shaped domain binding to HIV Golgin_A5 PF09787.9 gi|257388539|ref|YP_003178312.1| - 0.27 10.7 11.4 0.049 13.1 7.7 1.6 1 1 0 1 1 1 0 Golgin subfamily A member 5 DUF2730 PF10805.8 gi|257388539|ref|YP_003178312.1| - 0.27 11.3 4.8 3.1 7.9 1.5 2.8 1 1 2 3 3 3 0 Protein of unknown function (DUF2730) Snapin_Pallidin PF14712.6 gi|257388539|ref|YP_003178312.1| - 0.29 11.6 5.1 0.69 10.4 1.6 3.0 2 2 0 2 2 2 0 Snapin/Pallidin ApoC-I PF04691.12 gi|257388539|ref|YP_003178312.1| - 0.29 11.1 4.8 8.8 6.3 0.4 2.6 2 0 0 2 2 2 0 Apolipoprotein C-I (ApoC-1) Flagellin_N PF00669.20 gi|257388539|ref|YP_003178312.1| - 0.3 11.2 7.8 0.12 12.5 0.5 2.8 2 1 1 3 3 2 0 Bacterial flagellin N-terminal helical region HIP1_clath_bdg PF16515.5 gi|257388539|ref|YP_003178312.1| - 0.3 11.7 8.0 1.1 9.9 0.5 2.8 1 1 0 2 2 2 0 Clathrin-binding domain of Huntingtin-interacting protein 1 ABC_tran_CTD PF16326.5 gi|257388539|ref|YP_003178312.1| - 0.31 11.3 14.7 0.32 11.3 5.4 3.4 1 1 2 3 3 3 0 ABC transporter C-terminal domain Bacillus_HBL PF05791.11 gi|257388539|ref|YP_003178312.1| - 0.34 10.7 2.1 1.4 8.7 1.6 2.2 1 1 0 1 1 1 0 Bacillus haemolytic enterotoxin (HBL) LXG PF04740.12 gi|257388539|ref|YP_003178312.1| - 0.35 10.6 9.3 0.55 9.9 4.0 2.6 1 1 1 2 2 2 0 LXG domain of WXG superfamily DUF812 PF05667.11 gi|257388539|ref|YP_003178312.1| - 0.37 9.6 15.3 1.7 7.4 8.3 2.3 1 1 1 2 2 2 0 Protein of unknown function (DUF812) DUF4349 PF14257.6 gi|257388539|ref|YP_003178312.1| - 0.38 10.2 16.4 1.5 8.2 0.8 2.5 1 1 1 2 2 2 0 Domain of unknown function (DUF4349) CorA PF01544.18 gi|257388539|ref|YP_003178312.1| - 0.42 9.9 6.1 0.21 10.8 3.3 2.0 1 1 1 2 2 1 0 CorA-like Mg2+ transporter protein YabA PF06156.13 gi|257388539|ref|YP_003178312.1| - 0.47 11.1 3.9 6.7 7.4 0.4 3.1 1 1 1 2 2 2 0 Initiation control protein YabA Leu_zip PF15294.6 gi|257388539|ref|YP_003178312.1| - 0.51 9.8 7.3 2.6 7.5 1.2 2.2 1 1 1 2 2 2 0 Leucine zipper TMF_TATA_bd PF12325.8 gi|257388539|ref|YP_003178312.1| - 0.55 10.5 11.7 0.39 10.9 9.0 2.2 1 1 1 2 2 2 0 TATA element modulatory factor 1 TATA binding NleF_casp_inhib PF16809.5 gi|257388539|ref|YP_003178312.1| - 0.59 10.0 4.4 4.8 7.1 0.8 2.6 1 1 2 3 3 3 0 NleF caspase inhibitor Sec3_C PF09763.9 gi|257388539|ref|YP_003178312.1| - 0.59 8.4 4.7 0.26 9.7 2.5 1.5 1 1 0 1 1 1 0 Exocyst complex component Sec3 TolA_bind_tri PF16331.5 gi|257388539|ref|YP_003178312.1| - 0.62 10.2 4.7 4.6 7.4 0.0 3.3 1 1 2 3 3 2 0 TolA binding protein trimerisation DUF2408 PF10303.9 gi|257388539|ref|YP_003178312.1| - 0.64 10.6 5.7 3.2 8.3 5.3 2.3 1 1 0 1 1 1 0 Protein of unknown function (DUF2408) Spc24 PF08286.11 gi|257388539|ref|YP_003178312.1| - 0.69 10.2 8.9 1.6 9.0 1.6 3.2 1 1 2 3 3 2 0 Spc24 subunit of Ndc80 bZIP_1 PF00170.21 gi|257388539|ref|YP_003178312.1| - 0.71 10.0 2.4 8.9 6.5 0.1 3.1 2 1 1 3 3 3 0 bZIP transcription factor DUF4618 PF15397.6 gi|257388539|ref|YP_003178312.1| - 0.72 9.2 8.8 4.2 6.7 0.3 3.5 2 1 3 5 5 4 0 Domain of unknown function (DUF4618) Sec34 PF04136.15 gi|257388539|ref|YP_003178312.1| - 0.8 9.6 4.0 6.2 6.7 0.3 2.3 1 1 1 2 2 2 0 Sec34-like family Seryl_tRNA_N PF02403.22 gi|257388539|ref|YP_003178312.1| - 0.83 9.9 10.1 0.17 12.1 0.9 3.2 1 1 2 3 3 3 0 Seryl-tRNA synthetase N-terminal domain Cnn_1N PF07989.11 gi|257388539|ref|YP_003178312.1| - 1.3 9.2 7.4 11 6.3 0.1 3.4 1 1 2 3 3 3 0 Centrosomin N-terminal motif 1 DUF16 PF01519.16 gi|257388539|ref|YP_003178312.1| - 1.6 9.2 7.2 2.2 8.8 3.4 2.7 1 1 1 2 2 2 0 Protein of unknown function DUF16 CLZ PF16526.5 gi|257388539|ref|YP_003178312.1| - 1.8 9.0 6.8 10 6.6 0.8 3.2 2 1 1 3 3 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels TBCC_N PF16752.5 gi|257388539|ref|YP_003178312.1| - 1.8 9.0 9.5 2.1 8.8 0.5 3.2 1 1 2 3 3 3 0 Tubulin-specific chaperone C N-terminal domain HrpB7 PF09486.10 gi|257388539|ref|YP_003178312.1| - 1.8 8.9 15.4 0.11 12.8 2.1 3.4 2 1 1 3 3 2 0 Bacterial type III secretion protein (HrpB7) AATF-Che1 PF13339.6 gi|257388539|ref|YP_003178312.1| - 2.1 9.1 4.3 0.99 10.1 0.5 2.4 2 1 0 2 2 1 0 Apoptosis antagonizing transcription factor TMF_DNA_bd PF12329.8 gi|257388539|ref|YP_003178312.1| - 2.3 8.3 9.6 24 5.0 1.2 4.0 2 1 0 3 3 3 0 TATA element modulatory factor 1 DNA binding UPF0242 PF06785.11 gi|257388539|ref|YP_003178312.1| - 2.7 8.0 11.5 0.68 10.0 2.6 2.2 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus zf-C4H2 PF10146.9 gi|257388539|ref|YP_003178312.1| - 2.8 8.2 4.4 6.9 6.9 4.4 1.6 1 0 0 1 1 1 0 Zinc finger-containing protein Fez1 PF06818.15 gi|257388539|ref|YP_003178312.1| - 3.4 8.1 12.1 0.15 12.5 4.0 2.2 1 1 1 2 2 2 0 Fez1 CdvA PF18822.1 gi|257388539|ref|YP_003178312.1| - 4.3 7.2 8.1 73 3.2 6.8 3.1 1 1 1 2 2 2 0 CdvA-like coiled-coil domain CENP-H PF05837.12 gi|257388539|ref|YP_003178312.1| - 4.3 7.8 7.0 1.7 9.1 0.3 2.9 2 2 1 3 3 2 0 Centromere protein H (CENP-H) DUF2203 PF09969.9 gi|257388539|ref|YP_003178312.1| - 4.4 8.1 10.9 6.4 7.5 0.2 2.9 2 1 2 4 4 2 0 Uncharacterized conserved protein (DUF2203) XhlA PF10779.9 gi|257388539|ref|YP_003178312.1| - 4.6 7.5 10.6 10 6.4 5.0 3.6 1 1 1 3 3 3 0 Haemolysin XhlA SNARE PF05739.19 gi|257388539|ref|YP_003178312.1| - 5.1 7.2 5.8 13 5.9 0.0 3.0 3 0 0 3 3 2 0 SNARE domain DivIVA PF05103.13 gi|257388539|ref|YP_003178312.1| - 5.2 7.2 9.0 6.8 6.8 1.2 3.0 1 1 0 2 2 2 0 DivIVA protein MnmE_helical PF12631.7 gi|257388539|ref|YP_003178312.1| - 5.4 7.1 13.4 10 6.2 1.9 2.4 1 1 1 2 2 2 0 MnmE helical domain DUF4795 PF16043.5 gi|257388539|ref|YP_003178312.1| - 5.5 6.5 10.7 13 5.4 10.7 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4795) Csm1_N PF18504.1 gi|257388539|ref|YP_003178312.1| - 5.6 7.4 10.0 3.3 8.1 0.5 3.8 2 2 2 4 4 3 0 Csm1 N-terminal domain Syntaxin-6_N PF09177.11 gi|257388539|ref|YP_003178312.1| - 6.1 7.5 8.4 20 5.8 0.6 2.6 1 1 1 2 2 2 0 Syntaxin 6, N-terminal MIP-T3_C PF17749.1 gi|257388539|ref|YP_003178312.1| - 6.7 6.7 16.1 1.6 8.7 2.0 3.6 1 1 2 3 3 3 0 Microtubule-binding protein MIP-T3 C-terminal region PEP-utilisers_N PF05524.13 gi|257388539|ref|YP_003178312.1| - 7.1 6.8 14.4 0.39 10.9 1.5 3.2 1 1 2 3 3 3 0 PEP-utilising enzyme, N-terminal DUF4200 PF13863.6 gi|257388539|ref|YP_003178312.1| - 7.4 7.0 10.9 21 5.5 3.6 3.5 2 1 2 4 4 3 0 Domain of unknown function (DUF4200) HisG PF01634.18 gi|257388540|ref|YP_003178313.1| - 0.037 14.0 0.0 0.066 13.2 0.0 1.5 1 0 0 1 1 1 0 ATP phosphoribosyltransferase Abhydrolase_2 PF02230.16 gi|257388541|ref|YP_003178314.1| - 3.4e-20 72.8 0.0 1e-19 71.2 0.0 1.6 1 1 0 1 1 1 1 Phospholipase/Carboxylesterase DLH PF01738.18 gi|257388541|ref|YP_003178314.1| - 5.7e-07 29.3 0.0 7.9e-07 28.8 0.0 1.2 1 0 0 1 1 1 1 Dienelactone hydrolase family Hydrolase_4 PF12146.8 gi|257388541|ref|YP_003178314.1| - 8e-07 28.6 1.0 0.001 18.4 0.8 2.7 1 1 1 2 2 2 2 Serine aminopeptidase, S33 Abhydrolase_6 PF12697.7 gi|257388541|ref|YP_003178314.1| - 7.8e-05 23.4 5.0 0.00037 21.2 5.0 1.8 1 1 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|257388541|ref|YP_003178314.1| - 9.6e-05 22.1 0.0 0.00024 20.8 0.0 1.8 1 1 0 1 1 1 1 alpha/beta hydrolase fold FSH1 PF03959.13 gi|257388541|ref|YP_003178314.1| - 0.0097 15.6 0.0 0.014 15.1 0.0 1.4 1 0 0 1 1 1 1 Serine hydrolase (FSH1) Abhydrolase_3 PF07859.13 gi|257388541|ref|YP_003178314.1| - 0.01 15.7 0.5 0.24 11.2 0.3 2.2 1 1 1 2 2 2 1 alpha/beta hydrolase fold PE-PPE PF08237.11 gi|257388541|ref|YP_003178314.1| - 0.045 13.3 0.0 0.068 12.7 0.0 1.2 1 0 0 1 1 1 0 PE-PPE domain Peptidase_S9 PF00326.21 gi|257388541|ref|YP_003178314.1| - 0.05 13.1 0.5 4.8 6.6 0.1 2.8 3 0 0 3 3 3 0 Prolyl oligopeptidase family Cutinase PF01083.22 gi|257388541|ref|YP_003178314.1| - 0.13 12.2 0.0 0.33 10.9 0.0 1.8 2 1 0 2 2 2 0 Cutinase Radical_SAM PF04055.21 gi|257388542|ref|YP_003178315.1| - 6.4e-22 78.7 0.0 1.1e-21 78.0 0.0 1.3 1 0 0 1 1 1 1 Radical SAM superfamily Mob_synth_C PF06463.13 gi|257388542|ref|YP_003178315.1| - 1.8e-15 57.0 0.0 3.1e-15 56.2 0.0 1.4 1 0 0 1 1 1 1 Molybdenum Cofactor Synthesis C Fer4_12 PF13353.6 gi|257388542|ref|YP_003178315.1| - 4.6e-07 30.2 0.0 8.6e-07 29.3 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Fer4_14 PF13394.6 gi|257388542|ref|YP_003178315.1| - 4.6e-06 26.8 0.0 8.7e-06 25.9 0.0 1.4 1 0 0 1 1 1 1 4Fe-4S single cluster domain Cytochrome_CBB3 PF13442.6 gi|257388542|ref|YP_003178315.1| - 0.0065 16.8 0.1 0.98 9.8 0.0 3.0 2 1 0 2 2 2 1 Cytochrome C oxidase, cbb3-type, subunit III Cytochrom_C PF00034.21 gi|257388542|ref|YP_003178315.1| - 0.057 14.6 0.0 2.5 9.3 0.0 2.5 2 0 0 2 2 2 0 Cytochrome c MoeA_N PF03453.17 gi|257388543|ref|YP_003178316.1| - 6.1e-39 133.3 1.3 1.5e-38 132.1 1.3 1.6 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|257388543|ref|YP_003178316.1| - 1.1e-24 86.8 0.1 1.8e-24 86.1 0.1 1.3 1 0 0 1 1 1 1 Probable molybdopterin binding domain MoeA_C PF03454.15 gi|257388543|ref|YP_003178316.1| - 3.6e-18 65.5 0.3 1.5e-17 63.6 0.3 2.1 1 0 0 1 1 1 1 MoeA C-terminal region (domain IV) MoeA_N PF03453.17 gi|257388544|ref|YP_003178317.1| - 2.7e-38 131.2 4.7 5.5e-38 130.2 4.7 1.5 1 0 0 1 1 1 1 MoeA N-terminal region (domain I and II) MoCF_biosynth PF00994.24 gi|257388544|ref|YP_003178317.1| - 2.9e-23 82.1 0.2 1.5e-22 79.8 0.0 2.2 2 0 0 2 2 2 1 Probable molybdopterin binding domain PBP_like PF12727.7 gi|257388544|ref|YP_003178317.1| - 3.2e-21 75.3 0.0 1.1e-20 73.6 0.0 2.0 2 1 0 2 2 2 1 PBP superfamily domain MoeA_C PF03454.15 gi|257388544|ref|YP_003178317.1| - 5.4e-14 52.1 0.4 1.7e-13 50.5 0.0 2.2 2 0 0 2 2 2 1 MoeA C-terminal region (domain IV) ArsP_1 PF03773.13 gi|257388545|ref|YP_003178318.1| - 6.1e-59 199.6 11.0 7.3e-59 199.3 11.0 1.0 1 0 0 1 1 1 1 Predicted permease Dexa_ind PF15198.6 gi|257388545|ref|YP_003178318.1| - 2.6 8.2 5.9 5.6 7.1 0.2 2.6 2 0 0 2 2 2 0 Dexamethasone-induced HTH_5 PF01022.20 gi|257388546|ref|YP_003178319.1| - 2.3e-14 53.0 0.4 3.7e-14 52.3 0.4 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|257388546|ref|YP_003178319.1| - 1.1e-12 47.8 0.2 1.9e-12 47.1 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|257388546|ref|YP_003178319.1| - 0.00078 19.3 0.0 0.0032 17.3 0.0 1.9 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB BLACT_WH PF17778.1 gi|257388546|ref|YP_003178319.1| - 0.0025 17.8 0.2 0.0049 16.8 0.2 1.5 1 0 0 1 1 1 1 Beta-lactamase associated winged helix domain Penicillinase_R PF03965.16 gi|257388546|ref|YP_003178319.1| - 0.0058 17.0 0.0 0.012 16.0 0.0 1.6 2 0 0 2 2 2 1 Penicillinase repressor PaaX PF07848.12 gi|257388546|ref|YP_003178319.1| - 0.0071 16.5 0.0 0.012 15.8 0.0 1.4 1 0 0 1 1 1 1 PaaX-like protein HTH_24 PF13412.6 gi|257388546|ref|YP_003178319.1| - 0.01 15.4 0.0 0.031 13.8 0.0 1.8 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding DUF4123 PF13503.6 gi|257388546|ref|YP_003178319.1| - 0.012 16.1 0.0 0.015 15.8 0.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4123) Arg_repressor PF01316.21 gi|257388546|ref|YP_003178319.1| - 0.015 15.1 0.1 0.27 11.0 0.0 2.1 2 0 0 2 2 2 0 Arginine repressor, DNA binding domain HTH_27 PF13463.6 gi|257388546|ref|YP_003178319.1| - 0.016 15.7 0.1 0.039 14.4 0.0 1.7 2 0 0 2 2 2 0 Winged helix DNA-binding domain Rrf2 PF02082.20 gi|257388546|ref|YP_003178319.1| - 0.018 15.4 0.0 0.04 14.3 0.0 1.7 2 0 0 2 2 2 0 Transcriptional regulator MarR PF01047.22 gi|257388546|ref|YP_003178319.1| - 0.021 14.8 0.0 0.06 13.3 0.0 1.7 2 0 0 2 2 2 0 MarR family HTH_CodY PF08222.11 gi|257388546|ref|YP_003178319.1| - 0.042 13.4 0.0 0.1 12.2 0.0 1.6 2 0 0 2 2 2 0 CodY helix-turn-helix domain Fe_dep_repress PF01325.19 gi|257388546|ref|YP_003178319.1| - 0.054 13.7 0.0 0.12 12.6 0.0 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain DUF2513 PF10711.9 gi|257388546|ref|YP_003178319.1| - 0.069 13.4 0.0 0.087 13.1 0.0 1.4 1 1 0 1 1 1 0 Hypothetical protein (DUF2513) MarR_2 PF12802.7 gi|257388546|ref|YP_003178319.1| - 0.076 12.9 0.9 0.18 11.7 0.1 2.0 3 0 0 3 3 3 0 MarR family PadR PF03551.14 gi|257388546|ref|YP_003178319.1| - 0.11 12.5 0.1 1 9.4 0.1 2.3 2 1 0 2 2 2 0 Transcriptional regulator PadR-like family TFIIE_alpha PF02002.17 gi|257388546|ref|YP_003178319.1| - 0.12 12.2 0.0 0.24 11.3 0.0 1.5 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_34 PF13601.6 gi|257388546|ref|YP_003178319.1| - 0.13 12.5 0.0 0.23 11.7 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain Phage_integrase PF00589.22 gi|257388547|ref|YP_003178320.1| - 2.2e-15 56.9 0.0 4.2e-15 56.0 0.0 1.4 1 0 0 1 1 1 1 Phage integrase family Phage_int_SAM_1 PF02899.17 gi|257388547|ref|YP_003178320.1| - 9.9e-08 32.2 0.2 3e-07 30.6 0.1 1.8 2 0 0 2 2 2 1 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_4 PF13495.6 gi|257388547|ref|YP_003178320.1| - 1.2e-07 32.1 0.1 2.8e-07 30.9 0.1 1.6 1 0 0 1 1 1 1 Phage integrase, N-terminal SAM-like domain Phage_integr_3 PF16795.5 gi|257388547|ref|YP_003178320.1| - 0.067 13.1 0.0 0.27 11.1 0.0 1.9 2 0 0 2 2 2 0 Archaeal phage integrase Phage_int_SAM_5 PF13102.6 gi|257388547|ref|YP_003178320.1| - 0.19 12.1 0.0 0.4 11.0 0.0 1.5 1 0 0 1 1 1 0 Phage integrase SAM-like domain Apolipoprotein PF01442.18 gi|257388548|ref|YP_003178321.1| - 0.044 13.7 1.5 0.2 11.5 1.5 1.9 1 1 0 1 1 1 0 Apolipoprotein A1/A4/E domain NUDIX PF00293.28 gi|257388549|ref|YP_003178322.1| - 0.09 12.8 0.0 0.19 11.8 0.0 1.5 1 0 0 1 1 1 0 NUDIX domain DUF2914 PF11141.8 gi|257388549|ref|YP_003178322.1| - 0.16 11.8 0.2 0.25 11.1 0.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2914) HAMP PF00672.25 gi|257388550|ref|YP_003178323.1| - 9.5e-09 35.5 7.2 1.6e-06 28.4 0.1 3.7 3 0 0 3 3 3 2 HAMP domain dCache_1 PF02743.18 gi|257388550|ref|YP_003178323.1| - 1.4e-07 31.6 4.0 1.4e-07 31.6 4.0 2.8 2 1 1 3 3 3 1 Cache domain DUF2371 PF10177.9 gi|257388550|ref|YP_003178323.1| - 0.00087 19.5 0.1 0.18 12.0 0.1 2.5 2 0 0 2 2 2 1 Uncharacterised conserved protein (DUF2371) Prominin PF05478.11 gi|257388550|ref|YP_003178323.1| - 0.0055 14.7 3.8 0.27 9.1 2.7 2.4 2 0 0 2 2 2 2 Prominin Rx_N PF18052.1 gi|257388550|ref|YP_003178323.1| - 0.039 14.2 1.0 0.039 14.2 1.0 3.8 3 1 2 5 5 5 0 Rx N-terminal domain GIT1_C PF12205.8 gi|257388550|ref|YP_003178323.1| - 0.088 12.9 4.6 0.33 11.1 4.6 2.0 1 0 0 1 1 1 0 G protein-coupled receptor kinase-interacting protein 1 C term Corona_S2 PF01601.16 gi|257388550|ref|YP_003178323.1| - 0.1 11.1 2.0 0.17 10.3 2.0 1.4 1 0 0 1 1 1 0 Coronavirus S2 glycoprotein DUF3185 PF11381.8 gi|257388550|ref|YP_003178323.1| - 0.21 11.6 2.6 0.36 10.9 0.2 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF3185) V_ATPase_I PF01496.19 gi|257388550|ref|YP_003178323.1| - 0.22 9.4 13.6 0.077 10.9 10.7 1.6 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family Dynamin_M PF01031.20 gi|257388550|ref|YP_003178323.1| - 1.4 8.1 7.5 0.4 9.9 2.6 2.2 1 1 0 2 2 2 0 Dynamin central region DUF4061 PF13270.6 gi|257388550|ref|YP_003178323.1| - 2 8.8 8.0 0.37 11.1 1.3 3.3 2 1 2 4 4 4 0 Domain of unknown function (DUF4061) LMBR1 PF04791.16 gi|257388550|ref|YP_003178323.1| - 2.2 7.1 5.5 6.4 5.6 5.5 1.8 1 1 0 1 1 1 0 LMBR1-like membrane protein CobU PF02283.16 gi|257388550|ref|YP_003178323.1| - 5.5 6.5 9.2 2.8 7.5 1.6 2.5 1 1 1 2 2 2 0 Cobinamide kinase / cobinamide phosphate guanyltransferase DUF1664 PF07889.12 gi|257388550|ref|YP_003178323.1| - 6.6 6.8 23.8 0.042 13.9 4.3 4.2 3 1 1 4 4 4 0 Protein of unknown function (DUF1664) Laminin_II PF06009.12 gi|257388550|ref|YP_003178323.1| - 8.3 6.4 17.2 0.81 9.7 7.0 3.6 3 1 1 4 4 4 0 Laminin Domain II PfkB PF00294.24 gi|257388551|ref|YP_003178324.1| - 1.8e-53 181.8 0.1 2e-53 181.7 0.1 1.0 1 0 0 1 1 1 1 pfkB family carbohydrate kinase PK PF00224.21 gi|257388552|ref|YP_003178325.1| - 1.2e-110 369.6 2.1 1.8e-110 369.1 2.1 1.2 1 0 0 1 1 1 1 Pyruvate kinase, barrel domain PK_C PF02887.16 gi|257388552|ref|YP_003178325.1| - 1.3e-28 99.5 0.3 3e-28 98.4 0.3 1.7 1 0 0 1 1 1 1 Pyruvate kinase, alpha/beta domain PEP-utilizers PF00391.23 gi|257388552|ref|YP_003178325.1| - 1.8e-10 40.4 0.5 1.8e-10 40.4 0.5 4.2 5 0 0 5 5 5 1 PEP-utilising enzyme, mobile domain ROK PF00480.20 gi|257388553|ref|YP_003178326.1| - 1.7e-44 152.5 0.1 2.1e-44 152.2 0.1 1.0 1 0 0 1 1 1 1 ROK family FGGY_N PF00370.21 gi|257388553|ref|YP_003178326.1| - 0.0042 16.7 0.0 0.014 14.9 0.0 1.8 1 1 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain BcrAD_BadFG PF01869.20 gi|257388553|ref|YP_003178326.1| - 0.017 14.7 0.2 0.054 13.0 0.0 1.8 2 0 0 2 2 2 0 BadF/BadG/BcrA/BcrD ATPase family FtsA PF14450.6 gi|257388553|ref|YP_003178326.1| - 0.075 13.5 0.0 0.11 12.9 0.0 1.4 1 1 0 1 1 1 0 Cell division protein FtsA AAA_16 PF13191.6 gi|257388554|ref|YP_003178327.1| - 2.6e-08 34.4 0.2 1.6e-07 31.8 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain AAA_22 PF13401.6 gi|257388554|ref|YP_003178327.1| - 5.7e-06 26.7 0.0 1.5e-05 25.3 0.0 1.7 1 0 0 1 1 1 1 AAA domain TniB PF05621.11 gi|257388554|ref|YP_003178327.1| - 0.0089 15.4 0.0 0.016 14.6 0.0 1.4 1 0 0 1 1 1 1 Bacterial TniB protein AAA_assoc_2 PF16193.5 gi|257388554|ref|YP_003178327.1| - 0.023 15.0 0.1 0.058 13.7 0.1 1.6 1 0 0 1 1 1 0 AAA C-terminal domain HTH_20 PF12840.7 gi|257388554|ref|YP_003178327.1| - 0.14 12.2 1.4 0.62 10.2 0.1 2.6 3 0 0 3 3 3 0 Helix-turn-helix domain SMC_N PF02463.19 gi|257388554|ref|YP_003178327.1| - 0.19 11.1 0.0 0.32 10.4 0.0 1.3 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain MIP PF00230.20 gi|257388555|ref|YP_003178328.1| - 3e-44 151.4 12.5 1.8e-42 145.6 12.5 2.0 1 1 0 1 1 1 1 Major intrinsic protein PocR PF10114.9 gi|257388555|ref|YP_003178328.1| - 0.22 11.3 0.0 0.4 10.4 0.0 1.4 1 0 0 1 1 1 0 Sensory domain found in PocR Sensor_TM1 PF13755.6 gi|257388555|ref|YP_003178328.1| - 3.2 7.5 5.4 0.25 11.1 0.3 1.8 2 0 0 2 2 2 0 Sensor N-terminal transmembrane domain FGGY_N PF00370.21 gi|257388556|ref|YP_003178329.1| - 5.6e-76 255.3 0.0 7.5e-76 254.9 0.0 1.2 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, N-terminal domain FGGY_C PF02782.16 gi|257388556|ref|YP_003178329.1| - 8e-59 198.7 0.7 1.3e-58 198.0 0.7 1.3 1 0 0 1 1 1 1 FGGY family of carbohydrate kinases, C-terminal domain BcrAD_BadFG PF01869.20 gi|257388556|ref|YP_003178329.1| - 0.0022 17.5 0.2 0.2 11.1 0.0 2.3 2 0 0 2 2 2 2 BadF/BadG/BcrA/BcrD ATPase family MCPsignal PF00015.21 gi|257388557|ref|YP_003178330.1| - 1.7e-39 135.4 21.5 1.7e-39 135.4 21.5 4.6 2 1 1 4 4 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain SBP_bac_8 PF13416.6 gi|257388557|ref|YP_003178330.1| - 1.3e-37 130.2 0.0 3.4e-37 128.8 0.0 1.7 2 0 0 2 2 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|257388557|ref|YP_003178330.1| - 2.6e-20 73.6 0.0 4e-20 73.0 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein PhageMin_Tail PF10145.9 gi|257388557|ref|YP_003178330.1| - 0.00011 22.1 6.8 0.00011 22.1 6.8 3.0 2 1 0 3 3 2 1 Phage-related minor tail protein DUF1664 PF07889.12 gi|257388557|ref|YP_003178330.1| - 0.0003 20.8 32.3 0.00079 19.5 4.9 5.4 4 2 1 6 6 5 2 Protein of unknown function (DUF1664) DUF948 PF06103.11 gi|257388557|ref|YP_003178330.1| - 0.0037 17.5 43.6 0.013 15.8 4.4 7.2 4 2 2 7 7 7 2 Bacterial protein of unknown function (DUF948) TMPIT PF07851.13 gi|257388557|ref|YP_003178330.1| - 0.026 13.8 12.0 0.093 12.0 0.6 3.3 3 0 0 3 3 3 0 TMPIT-like protein CENP-K PF11802.8 gi|257388557|ref|YP_003178330.1| - 0.041 13.5 4.7 1.3 8.5 0.2 2.7 2 1 0 2 2 2 0 Centromere-associated protein K BLOC1_2 PF10046.9 gi|257388557|ref|YP_003178330.1| - 0.072 13.4 23.2 0.11 12.8 1.3 6.2 4 2 3 7 7 7 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 PA28_beta PF02252.18 gi|257388557|ref|YP_003178330.1| - 0.089 12.5 0.2 0.31 10.7 0.2 1.9 1 0 0 1 1 1 0 Proteasome activator pa28 beta subunit IFT57 PF10498.9 gi|257388557|ref|YP_003178330.1| - 0.11 11.5 21.2 0.99 8.3 11.1 2.7 2 1 0 2 2 2 0 Intra-flagellar transport protein 57 LOH1CR12 PF10158.9 gi|257388557|ref|YP_003178330.1| - 0.12 12.4 10.2 0.27 11.3 0.3 3.6 4 1 0 4 4 2 0 Tumour suppressor protein Mer2 PF09074.10 gi|257388557|ref|YP_003178330.1| - 0.16 11.8 8.2 0.11 12.3 2.1 3.0 2 1 1 3 3 3 0 Mer2 YlqD PF11068.8 gi|257388557|ref|YP_003178330.1| - 0.17 12.3 15.5 0.11 12.9 1.9 3.5 3 0 0 3 3 3 0 YlqD protein Baculo_F PF12259.8 gi|257388557|ref|YP_003178330.1| - 0.21 10.1 7.3 0.91 8.0 0.1 2.9 1 1 2 3 3 3 0 Baculovirus F protein Goodbye PF17109.5 gi|257388557|ref|YP_003178330.1| - 0.45 11.0 11.2 6 7.4 0.5 4.4 3 2 1 4 4 4 0 fungal STAND N-terminal Goodbye domain Ran-binding PF05508.11 gi|257388557|ref|YP_003178330.1| - 0.46 9.4 8.0 0.19 10.7 1.0 2.6 2 0 0 2 2 2 0 RanGTP-binding protein T3SSipB PF16535.5 gi|257388557|ref|YP_003178330.1| - 0.65 10.5 20.4 1.2 9.7 3.9 4.1 3 1 0 3 3 3 0 Type III cell invasion protein SipB ATG16 PF08614.11 gi|257388557|ref|YP_003178330.1| - 0.79 9.9 36.0 0.042 14.1 3.8 3.7 3 1 0 3 3 3 0 Autophagy protein 16 (ATG16) MAD PF05557.13 gi|257388557|ref|YP_003178330.1| - 0.92 7.8 21.5 0.035 12.5 8.9 2.2 1 1 1 2 2 2 0 Mitotic checkpoint protein Prominin PF05478.11 gi|257388557|ref|YP_003178330.1| - 0.93 7.4 10.1 2.7 5.9 6.7 2.2 1 1 2 3 3 3 0 Prominin Zw10 PF06248.13 gi|257388557|ref|YP_003178330.1| - 0.96 7.9 8.5 0.2 10.2 2.4 2.4 2 0 0 2 2 2 0 Centromere/kinetochore Zw10 SKA2 PF16740.5 gi|257388557|ref|YP_003178330.1| - 1.4 8.8 14.1 4.9 7.0 0.3 5.0 4 2 0 4 4 3 0 Spindle and kinetochore-associated protein 2 Spectrin PF00435.21 gi|257388557|ref|YP_003178330.1| - 1.7 9.2 16.5 15 6.1 0.9 5.3 1 1 3 5 5 5 0 Spectrin repeat Dor1 PF04124.12 gi|257388557|ref|YP_003178330.1| - 1.7 7.2 11.1 0.88 8.2 2.4 2.5 2 0 0 2 2 2 0 Dor1-like family Fib_alpha PF08702.10 gi|257388557|ref|YP_003178330.1| - 1.7 8.8 19.3 0.65 10.2 0.9 3.9 3 1 1 4 4 4 0 Fibrinogen alpha/beta chain family NPV_P10 PF05531.12 gi|257388557|ref|YP_003178330.1| - 2 9.0 26.9 5.3 7.6 4.9 6.2 5 2 2 7 7 6 0 Nucleopolyhedrovirus P10 protein AAA_13 PF13166.6 gi|257388557|ref|YP_003178330.1| - 2.9 6.4 24.8 3.7 6.1 7.0 2.6 1 1 0 2 2 2 0 AAA domain Laminin_II PF06009.12 gi|257388557|ref|YP_003178330.1| - 3.1 7.8 36.6 0.04 13.9 3.7 4.8 4 2 2 6 6 4 0 Laminin Domain II FlgN PF05130.12 gi|257388557|ref|YP_003178330.1| - 3.3 8.2 24.5 4.2 7.9 6.4 4.7 2 1 2 4 4 4 0 FlgN protein Seryl_tRNA_N PF02403.22 gi|257388557|ref|YP_003178330.1| - 3.7 7.8 24.5 1.7 8.9 0.4 5.0 3 2 1 4 4 4 0 Seryl-tRNA synthetase N-terminal domain DUF3450 PF11932.8 gi|257388557|ref|YP_003178330.1| - 4 6.7 31.8 1.6 8.0 6.1 4.1 3 2 0 3 3 3 0 Protein of unknown function (DUF3450) DUF4201 PF13870.6 gi|257388557|ref|YP_003178330.1| - 4.2 7.1 8.3 4.3 7.0 0.2 3.1 3 0 0 3 3 3 0 Domain of unknown function (DUF4201) CheZ PF04344.13 gi|257388557|ref|YP_003178330.1| - 4.3 7.2 24.7 0.17 11.7 4.3 3.6 3 1 0 3 3 3 0 Chemotaxis phosphatase, CheZ Fez1 PF06818.15 gi|257388557|ref|YP_003178330.1| - 4.4 7.7 23.9 0.55 10.7 1.4 3.3 3 0 0 3 3 3 0 Fez1 EzrA PF06160.12 gi|257388557|ref|YP_003178330.1| - 5.3 5.1 22.7 0.064 11.4 0.6 3.0 3 0 0 3 3 3 0 Septation ring formation regulator, EzrA LXG PF04740.12 gi|257388557|ref|YP_003178330.1| - 5.3 6.7 21.7 0.082 12.6 4.3 4.6 3 1 1 4 4 3 0 LXG domain of WXG superfamily Nre_C PF04895.12 gi|257388557|ref|YP_003178330.1| - 6.5 6.7 7.7 11 6.0 0.3 3.8 3 1 1 4 4 3 0 Archaeal Nre, C-terminal TPR_MLP1_2 PF07926.12 gi|257388557|ref|YP_003178330.1| - 7.5 6.6 41.5 0.28 11.3 5.9 4.7 3 2 0 4 4 4 0 TPR/MLP1/MLP2-like protein RPW8 PF05659.11 gi|257388557|ref|YP_003178330.1| - 7.7 6.2 9.2 28 4.4 0.1 4.4 4 1 1 5 5 5 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 DUF4559 PF15112.6 gi|257388557|ref|YP_003178330.1| - 7.9 6.1 17.8 9.8 5.8 0.1 2.9 2 1 2 4 4 4 0 Domain of unknown function (DUF4559) Atg14 PF10186.9 gi|257388557|ref|YP_003178330.1| - 8.6 5.3 20.1 0.27 10.3 1.2 3.2 1 1 2 3 3 3 0 Vacuolar sorting 38 and autophagy-related subunit 14 PI3K_P85_iSH2 PF16454.5 gi|257388557|ref|YP_003178330.1| - 9.2 5.8 12.2 1.8 8.1 1.6 3.6 4 0 0 4 4 3 0 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain Sec5 PF15469.6 gi|257388557|ref|YP_003178330.1| - 9.5 6.0 7.1 3.4 7.4 0.4 3.1 2 2 1 3 3 3 0 Exocyst complex component Sec5 DAO PF01266.24 gi|257388558|ref|YP_003178331.1| - 2e-53 182.2 2.6 3.3e-53 181.5 2.6 1.4 1 0 0 1 1 1 1 FAD dependent oxidoreductase Fer2_BFD PF04324.15 gi|257388558|ref|YP_003178331.1| - 5.9e-09 36.1 1.2 1.7e-08 34.7 1.2 1.9 1 0 0 1 1 1 1 BFD-like [2Fe-2S] binding domain FAD_binding_2 PF00890.24 gi|257388558|ref|YP_003178331.1| - 3e-08 33.2 8.5 8.7e-08 31.6 8.5 1.7 1 1 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|257388558|ref|YP_003178331.1| - 6e-08 32.3 1.6 2.6e-07 30.2 1.6 1.9 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|257388558|ref|YP_003178331.1| - 0.002 18.3 1.4 0.016 15.4 0.8 2.5 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain Pyr_redox PF00070.27 gi|257388558|ref|YP_003178331.1| - 0.0045 17.5 1.0 0.0045 17.5 1.0 2.2 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase DAO_C PF16901.5 gi|257388558|ref|YP_003178331.1| - 0.0047 16.8 0.0 0.014 15.3 0.0 1.8 1 0 0 1 1 1 1 C-terminal domain of alpha-glycerophosphate oxidase Pyr_redox_3 PF13738.6 gi|257388558|ref|YP_003178331.1| - 0.0053 16.0 0.8 0.1 11.8 0.1 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|257388558|ref|YP_003178331.1| - 0.02 14.2 9.1 0.13 11.6 9.2 2.0 1 1 0 1 1 1 0 FAD dependent oxidoreductase Thi4 PF01946.17 gi|257388558|ref|YP_003178331.1| - 0.027 13.7 2.9 1 8.5 0.1 2.3 2 0 0 2 2 2 0 Thi4 family 3HCDH_N PF02737.18 gi|257388558|ref|YP_003178331.1| - 0.028 14.3 0.2 0.059 13.3 0.2 1.6 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GIDA PF01134.22 gi|257388558|ref|YP_003178331.1| - 0.031 13.4 4.0 0.49 9.4 1.3 2.1 2 0 0 2 2 2 0 Glucose inhibited division protein A NAD_binding_7 PF13241.6 gi|257388558|ref|YP_003178331.1| - 0.037 14.5 0.5 0.092 13.2 0.5 1.8 1 1 0 1 1 1 0 Putative NAD(P)-binding ApbA PF02558.16 gi|257388558|ref|YP_003178331.1| - 0.048 13.3 0.2 0.14 11.8 0.2 1.9 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA FAD_binding_3 PF01494.19 gi|257388558|ref|YP_003178331.1| - 0.055 12.7 9.0 0.49 9.6 9.0 2.1 1 1 0 1 1 1 0 FAD binding domain HI0933_like PF03486.14 gi|257388558|ref|YP_003178331.1| - 0.056 12.1 1.8 0.22 10.2 0.2 2.2 2 0 0 2 2 2 0 HI0933-like protein P_C PF06640.11 gi|257388558|ref|YP_003178331.1| - 0.094 12.8 1.3 2 8.5 0.4 2.3 2 0 0 2 2 2 0 P protein C-terminus Antifungal_pept PF11410.8 gi|257388558|ref|YP_003178331.1| - 0.11 12.4 0.1 0.24 11.3 0.1 1.5 1 0 0 1 1 1 0 Antifungal peptide FAIM1 PF06905.13 gi|257388558|ref|YP_003178331.1| - 0.18 11.5 0.0 0.31 10.7 0.0 1.3 1 0 0 1 1 1 0 Fas apoptotic inhibitory molecule (FAIM1) K_oxygenase PF13434.6 gi|257388558|ref|YP_003178331.1| - 0.25 10.5 1.1 0.48 9.5 0.1 1.8 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) Trp_halogenase PF04820.14 gi|257388558|ref|YP_003178331.1| - 1 8.1 4.1 0.23 10.3 0.8 1.6 2 0 0 2 2 2 0 Tryptophan halogenase NAD_binding_9 PF13454.6 gi|257388558|ref|YP_003178331.1| - 1.3 9.0 4.5 14 5.6 0.5 2.4 2 0 0 2 2 2 0 FAD-NAD(P)-binding FAD_binding_2 PF00890.24 gi|257388559|ref|YP_003178332.1| - 2.6e-38 132.2 3.2 3.1e-38 132.0 3.2 1.0 1 0 0 1 1 1 1 FAD binding domain FAD_oxidored PF12831.7 gi|257388559|ref|YP_003178332.1| - 3.8e-07 29.8 3.5 5.5e-06 26.0 3.7 2.2 2 0 0 2 2 2 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|257388559|ref|YP_003178332.1| - 9.8e-07 28.3 0.2 0.00051 19.4 0.1 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase GIDA PF01134.22 gi|257388559|ref|YP_003178332.1| - 6.5e-06 25.5 1.6 1.1e-05 24.8 1.0 1.6 2 0 0 2 2 2 1 Glucose inhibited division protein A HI0933_like PF03486.14 gi|257388559|ref|YP_003178332.1| - 0.00026 19.8 0.1 0.023 13.4 0.4 2.2 2 0 0 2 2 2 1 HI0933-like protein AlaDh_PNT_C PF01262.21 gi|257388559|ref|YP_003178332.1| - 0.0009 18.6 2.0 0.0014 17.9 2.0 1.2 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain FAD_binding_3 PF01494.19 gi|257388559|ref|YP_003178332.1| - 0.0017 17.7 0.8 0.0032 16.8 0.8 1.4 1 0 0 1 1 1 1 FAD binding domain DAO PF01266.24 gi|257388559|ref|YP_003178332.1| - 0.0023 17.6 8.5 0.0083 15.8 8.4 1.9 1 1 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|257388559|ref|YP_003178332.1| - 0.0035 17.9 0.4 0.01 16.4 0.4 1.8 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_7 PF13241.6 gi|257388559|ref|YP_003178332.1| - 0.013 15.9 0.2 0.027 14.9 0.1 1.6 2 0 0 2 2 1 0 Putative NAD(P)-binding 3HCDH_N PF02737.18 gi|257388559|ref|YP_003178332.1| - 0.017 15.0 0.7 0.027 14.3 0.7 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_8 PF13450.6 gi|257388559|ref|YP_003178332.1| - 0.025 14.8 2.1 0.076 13.2 2.1 1.8 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.6 gi|257388559|ref|YP_003178332.1| - 0.13 11.4 0.9 0.23 10.7 0.5 1.5 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase CCG PF02754.16 gi|257388560|ref|YP_003178333.1| - 1.1e-17 64.0 8.5 5.5e-09 36.1 0.0 2.7 3 0 0 3 3 2 2 Cysteine-rich domain Fer4_8 PF13183.6 gi|257388560|ref|YP_003178333.1| - 8.1e-10 39.0 13.0 1.2e-09 38.5 5.5 3.3 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|257388560|ref|YP_003178333.1| - 7.5e-07 29.6 7.3 7.5e-07 29.6 7.3 3.4 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|257388560|ref|YP_003178333.1| - 0.00012 22.1 16.0 0.01 15.9 13.7 3.8 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|257388560|ref|YP_003178333.1| - 0.0008 19.9 12.7 0.0008 19.9 12.7 3.1 3 1 1 4 4 4 2 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|257388560|ref|YP_003178333.1| - 0.0012 19.0 16.5 0.0016 18.6 11.6 3.3 3 1 1 4 4 4 2 4Fe-4S dicluster domain zf-CSL PF05207.13 gi|257388560|ref|YP_003178333.1| - 0.0047 16.6 8.8 0.063 13.0 0.1 4.5 5 0 0 5 5 5 1 CSL zinc finger DUF3390 PF11870.8 gi|257388560|ref|YP_003178333.1| - 0.045 14.1 0.4 0.09 13.2 0.4 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF3390) Fer4_16 PF13484.6 gi|257388560|ref|YP_003178333.1| - 0.092 13.7 15.2 0.13 13.2 11.3 3.2 3 1 1 4 4 4 0 4Fe-4S double cluster binding domain Fer4_18 PF13746.6 gi|257388560|ref|YP_003178333.1| - 0.12 12.5 7.7 3 8.1 0.2 3.5 4 0 0 4 4 4 0 4Fe-4S dicluster domain CxC7 PF18866.1 gi|257388560|ref|YP_003178333.1| - 1.8 8.8 5.5 4.1 7.6 0.1 3.2 3 0 0 3 3 3 0 CxC7 like cysteine cluster associated with KDZ transposases Fer4_21 PF14697.6 gi|257388560|ref|YP_003178333.1| - 1.9 8.7 15.0 0.36 11.0 1.7 3.2 4 0 0 4 4 3 0 4Fe-4S dicluster domain Fer4 PF00037.27 gi|257388560|ref|YP_003178333.1| - 2.8 7.9 20.0 0.45 10.4 3.4 2.9 3 0 0 3 3 2 0 4Fe-4S binding domain Usp PF00582.26 gi|257388561|ref|YP_003178334.1| - 1.6e-19 70.8 0.2 2e-19 70.5 0.2 1.1 1 0 0 1 1 1 1 Universal stress protein family KR PF08659.10 gi|257388561|ref|YP_003178334.1| - 0.085 12.8 0.0 0.14 12.1 0.0 1.4 1 0 0 1 1 1 0 KR domain PGK PF00162.19 gi|257388561|ref|YP_003178334.1| - 0.12 11.3 0.0 0.19 10.7 0.0 1.2 1 1 0 1 1 1 0 Phosphoglycerate kinase ABC2_membrane_3 PF12698.7 gi|257388562|ref|YP_003178335.1| - 0.00099 18.3 9.0 0.00099 18.3 9.0 2.1 2 0 0 2 2 2 1 ABC-2 family transporter protein DUF697 PF05128.12 gi|257388562|ref|YP_003178335.1| - 9.2 5.9 8.1 0.85 9.3 0.2 2.6 2 1 0 2 2 2 0 Domain of unknown function (DUF697) ABC_tran PF00005.27 gi|257388563|ref|YP_003178336.1| - 4.4e-30 105.0 0.0 6.9e-30 104.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|257388563|ref|YP_003178336.1| - 3.1e-11 43.7 0.1 2.1e-05 24.5 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|257388563|ref|YP_003178336.1| - 1.6e-05 25.6 0.0 2e-05 25.2 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|257388563|ref|YP_003178336.1| - 2.9e-05 23.7 0.0 6.4e-05 22.6 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|257388563|ref|YP_003178336.1| - 0.0021 17.8 0.0 0.0042 16.8 0.0 1.5 1 1 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|257388563|ref|YP_003178336.1| - 0.0024 17.2 0.0 0.0035 16.6 0.0 1.2 1 0 0 1 1 1 1 Zeta toxin AAA_33 PF13671.6 gi|257388563|ref|YP_003178336.1| - 0.0041 17.3 0.1 0.058 13.5 0.1 2.1 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|257388563|ref|YP_003178336.1| - 0.0072 16.1 0.0 0.81 9.3 0.0 2.0 2 0 0 2 2 2 1 AAA ATPase domain SMC_N PF02463.19 gi|257388563|ref|YP_003178336.1| - 0.0088 15.5 0.0 0.075 12.5 0.0 2.0 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain MukB PF04310.12 gi|257388563|ref|YP_003178336.1| - 0.0098 15.7 0.0 0.016 15.0 0.0 1.3 1 0 0 1 1 1 1 MukB N-terminal AAA_16 PF13191.6 gi|257388563|ref|YP_003178336.1| - 0.011 16.2 0.0 0.019 15.3 0.0 1.4 1 1 0 1 1 1 0 AAA ATPase domain RsgA_GTPase PF03193.16 gi|257388563|ref|YP_003178336.1| - 0.043 13.7 0.0 0.071 13.0 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_27 PF13514.6 gi|257388563|ref|YP_003178336.1| - 0.14 11.7 0.0 0.22 11.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|257388563|ref|YP_003178336.1| - 0.15 11.8 0.1 19 4.9 0.0 2.3 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_22 PF13401.6 gi|257388563|ref|YP_003178336.1| - 0.19 12.0 0.0 0.42 10.9 0.0 1.6 1 1 0 1 1 1 0 AAA domain PEPcase PF00311.17 gi|257388564|ref|YP_003178337.1| - 4e-236 785.9 0.0 5.9e-236 785.3 0.0 1.3 1 0 0 1 1 1 1 Phosphoenolpyruvate carboxylase PEPcase_2 PF14010.6 gi|257388564|ref|YP_003178337.1| - 0.028 12.9 0.0 0.053 12.0 0.0 1.4 1 0 0 1 1 1 0 Phosphoenolpyruvate carboxylase Abhydrolase_1 PF00561.20 gi|257388565|ref|YP_003178338.1| - 2e-21 76.8 0.0 5.9e-20 72.0 0.0 2.0 1 1 0 1 1 1 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|257388565|ref|YP_003178338.1| - 8.9e-16 59.2 4.4 1.1e-15 58.9 4.4 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|257388565|ref|YP_003178338.1| - 5.9e-15 55.2 0.0 1e-14 54.4 0.0 1.4 1 1 0 1 1 1 1 Serine aminopeptidase, S33 Abhydrolase_4 PF08386.10 gi|257388565|ref|YP_003178338.1| - 2.9e-07 30.5 0.0 6.9e-07 29.3 0.0 1.7 1 0 0 1 1 1 1 TAP-like protein Abhydrolase_5 PF12695.7 gi|257388565|ref|YP_003178338.1| - 9.6e-07 28.7 0.0 0.029 14.1 0.0 2.2 2 0 0 2 2 2 2 Alpha/beta hydrolase family Esterase_phd PF10503.9 gi|257388565|ref|YP_003178338.1| - 0.015 14.8 0.1 0.62 9.5 0.0 2.2 2 0 0 2 2 2 0 Esterase PHB depolymerase Peptidase_S9 PF00326.21 gi|257388565|ref|YP_003178338.1| - 0.022 14.2 0.2 0.23 10.9 0.0 2.5 3 0 0 3 3 3 0 Prolyl oligopeptidase family UPF0227 PF05728.12 gi|257388565|ref|YP_003178338.1| - 0.078 12.9 0.0 1.3 8.9 0.0 2.2 1 1 0 1 1 1 0 Uncharacterised protein family (UPF0227) FSH1 PF03959.13 gi|257388565|ref|YP_003178338.1| - 0.081 12.6 0.0 0.14 11.8 0.0 1.4 1 0 0 1 1 1 0 Serine hydrolase (FSH1) Ndr PF03096.14 gi|257388565|ref|YP_003178338.1| - 0.1 11.3 0.0 0.14 10.8 0.0 1.1 1 0 0 1 1 1 0 Ndr family Thioesterase PF00975.20 gi|257388565|ref|YP_003178338.1| - 0.11 12.6 0.0 0.35 11.0 0.0 1.8 1 1 0 1 1 1 0 Thioesterase domain AMP-binding PF00501.28 gi|257388566|ref|YP_003178339.1| - 5.1e-87 292.2 0.0 6.6e-87 291.8 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|257388566|ref|YP_003178339.1| - 1.2e-14 55.0 0.1 2.5e-14 54.0 0.1 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain HTH_10 PF04967.12 gi|257388567|ref|YP_003178340.1| - 8.8e-17 60.7 0.0 1.4e-16 60.0 0.0 1.3 1 0 0 1 1 1 1 HTH DNA binding domain MarR_2 PF12802.7 gi|257388567|ref|YP_003178340.1| - 0.0017 18.2 0.0 0.0082 16.0 0.0 2.1 2 0 0 2 2 2 1 MarR family Sigma70_r4 PF04545.16 gi|257388567|ref|YP_003178340.1| - 0.05 13.1 0.0 0.11 12.1 0.0 1.6 1 0 0 1 1 1 0 Sigma-70, region 4 SpoIIID PF12116.8 gi|257388567|ref|YP_003178340.1| - 0.084 13.0 0.0 3.2 7.9 0.0 2.4 2 0 0 2 2 2 0 Stage III sporulation protein D UPF0122 PF04297.14 gi|257388567|ref|YP_003178340.1| - 0.088 13.0 0.0 0.25 11.6 0.0 1.7 2 0 0 2 2 2 0 Putative helix-turn-helix protein, YlxM / p13 like HTH_5 PF01022.20 gi|257388567|ref|YP_003178340.1| - 0.1 12.5 0.0 0.19 11.6 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family BAT PF15915.5 gi|257388567|ref|YP_003178340.1| - 0.25 11.2 8.0 0.16 11.8 5.4 2.0 1 1 1 2 2 2 0 GAF and HTH_10 associated domain Peripla_BP_6 PF13458.6 gi|257388568|ref|YP_003178341.1| - 5.8e-66 223.5 9.2 8.3e-66 223.0 9.2 1.1 1 0 0 1 1 1 1 Periplasmic binding protein Peripla_BP_5 PF13433.6 gi|257388568|ref|YP_003178341.1| - 9.1e-19 67.7 0.5 1.7e-18 66.7 0.5 1.5 1 1 0 1 1 1 1 Periplasmic binding protein domain ABC_tran PF00005.27 gi|257388569|ref|YP_003178342.1| - 1.2e-21 77.7 0.0 1.6e-21 77.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter BCA_ABC_TP_C PF12399.8 gi|257388569|ref|YP_003178342.1| - 1.3e-10 40.9 1.4 2e-10 40.3 0.2 2.0 2 0 0 2 2 2 1 Branched-chain amino acid ATP-binding cassette transporter AAA_21 PF13304.6 gi|257388569|ref|YP_003178342.1| - 4.3e-06 26.8 0.0 0.0017 18.3 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|257388569|ref|YP_003178342.1| - 2.9e-05 24.7 0.2 3.6e-05 24.4 0.2 1.3 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|257388569|ref|YP_003178342.1| - 0.0022 17.7 0.1 0.0042 16.8 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|257388569|ref|YP_003178342.1| - 0.0077 16.5 0.1 0.13 12.5 0.1 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|257388569|ref|YP_003178342.1| - 0.017 14.6 0.2 0.064 12.7 0.2 1.8 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_15 PF13175.6 gi|257388569|ref|YP_003178342.1| - 0.059 13.1 0.0 0.092 12.4 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain AAA_30 PF13604.6 gi|257388569|ref|YP_003178342.1| - 0.08 12.6 0.1 0.44 10.2 0.1 1.9 1 1 0 1 1 1 0 AAA domain MukB PF04310.12 gi|257388569|ref|YP_003178342.1| - 0.1 12.4 0.0 0.19 11.5 0.0 1.4 1 0 0 1 1 1 0 MukB N-terminal AAA_27 PF13514.6 gi|257388569|ref|YP_003178342.1| - 0.11 12.1 0.0 0.2 11.2 0.0 1.4 1 1 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|257388569|ref|YP_003178342.1| - 0.12 12.3 0.0 0.21 11.5 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase ABC_tran PF00005.27 gi|257388570|ref|YP_003178343.1| - 1.6e-28 99.9 0.0 2.1e-28 99.6 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|257388570|ref|YP_003178343.1| - 3.5e-07 30.3 0.0 0.0049 16.7 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_16 PF13191.6 gi|257388570|ref|YP_003178343.1| - 0.0024 18.3 0.4 0.0038 17.6 0.4 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|257388570|ref|YP_003178343.1| - 0.0052 17.1 0.3 0.04 14.2 0.2 2.1 1 1 1 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|257388570|ref|YP_003178343.1| - 0.011 15.5 0.0 0.02 14.6 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain NB-ARC PF00931.22 gi|257388570|ref|YP_003178343.1| - 0.035 13.3 0.0 0.042 13.0 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain NACHT PF05729.12 gi|257388570|ref|YP_003178343.1| - 0.044 13.7 0.1 0.1 12.5 0.0 1.6 2 0 0 2 2 2 0 NACHT domain AAA_30 PF13604.6 gi|257388570|ref|YP_003178343.1| - 0.046 13.4 1.7 0.18 11.5 1.6 2.1 1 1 0 1 1 1 0 AAA domain SRP54 PF00448.22 gi|257388570|ref|YP_003178343.1| - 0.1 12.2 0.1 0.19 11.3 0.1 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain RsgA_GTPase PF03193.16 gi|257388570|ref|YP_003178343.1| - 0.11 12.4 0.0 0.17 11.8 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase TsaE PF02367.17 gi|257388570|ref|YP_003178343.1| - 0.13 12.3 0.0 0.22 11.5 0.0 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA PF00004.29 gi|257388570|ref|YP_003178343.1| - 0.18 12.2 0.0 0.28 11.6 0.0 1.4 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_15 PF13175.6 gi|257388570|ref|YP_003178343.1| - 0.25 11.0 0.0 0.59 9.8 0.0 1.6 2 0 0 2 2 2 0 AAA ATPase domain BPD_transp_2 PF02653.16 gi|257388571|ref|YP_003178344.1| - 1.9e-41 142.0 40.7 2.2e-41 141.8 40.7 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.16 gi|257388572|ref|YP_003178345.1| - 2.4e-33 115.5 22.3 2.4e-33 115.5 22.3 1.8 3 0 0 3 3 3 1 Branched-chain amino acid transport system / permease component ACP_syn_III_C PF08541.10 gi|257388573|ref|YP_003178346.1| - 8.1e-18 64.4 0.7 1.8e-15 56.9 0.0 3.2 4 0 0 4 4 4 2 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ACP_syn_III PF08545.10 gi|257388573|ref|YP_003178346.1| - 4.7e-12 45.6 1.3 5.2e-12 45.5 0.3 1.7 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Thiolase_N PF00108.23 gi|257388573|ref|YP_003178346.1| - 0.00014 21.3 0.2 0.00034 20.1 0.1 1.6 2 0 0 2 2 2 1 Thiolase, N-terminal domain GFO_IDH_MocA PF01408.22 gi|257388575|ref|YP_003178348.1| - 1e-21 77.9 0.0 1.8e-21 77.2 0.0 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold TrkA_N PF02254.18 gi|257388575|ref|YP_003178348.1| - 0.018 15.3 0.0 0.036 14.3 0.0 1.7 1 1 0 1 1 1 0 TrkA-N domain Semialdhyde_dh PF01118.24 gi|257388575|ref|YP_003178348.1| - 0.084 13.3 0.0 0.19 12.2 0.0 1.5 1 0 0 1 1 1 0 Semialdehyde dehydrogenase, NAD binding domain GFO_IDH_MocA_C PF02894.17 gi|257388575|ref|YP_003178348.1| - 0.11 12.5 0.0 0.32 11.0 0.0 1.8 2 0 0 2 2 2 0 Oxidoreductase family, C-terminal alpha/beta domain DnaJ PF00226.31 gi|257388576|ref|YP_003178349.1| - 3.2e-17 62.4 0.9 4.6e-17 61.9 0.9 1.3 1 0 0 1 1 1 1 DnaJ domain Mucin PF01456.17 gi|257388576|ref|YP_003178349.1| - 4 7.4 14.2 7.9 6.5 14.2 1.4 1 0 0 1 1 1 0 Mucin-like glycoprotein SRP-alpha_N PF04086.13 gi|257388576|ref|YP_003178349.1| - 5 7.0 9.4 6.7 6.5 9.4 1.1 1 0 0 1 1 1 0 Signal recognition particle, alpha subunit, N-terminal MS_channel PF00924.18 gi|257388576|ref|YP_003178349.1| - 5.7 6.4 5.1 9.1 5.8 5.1 1.3 1 0 0 1 1 1 0 Mechanosensitive ion channel TPP_enzyme_N PF02776.18 gi|257388577|ref|YP_003178350.1| - 3.1e-37 127.8 0.2 8e-37 126.5 0.2 1.7 2 0 0 2 2 2 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_M_2 PF16582.5 gi|257388577|ref|YP_003178350.1| - 4.5e-11 42.8 0.0 9e-11 41.9 0.0 1.4 1 1 0 1 1 1 1 Middle domain of thiamine pyrophosphate TPP_enzyme_C PF02775.21 gi|257388577|ref|YP_003178350.1| - 0.0002 21.2 0.0 0.00037 20.3 0.0 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RHH_1 PF01402.21 gi|257388578|ref|YP_003178351.1| - 0.007 16.3 0.1 0.0093 15.9 0.1 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family IclR PF01614.18 gi|257388578|ref|YP_003178351.1| - 0.1 12.4 0.0 0.13 12.1 0.0 1.1 1 0 0 1 1 1 0 Bacterial transcriptional regulator UPF0058 PF01893.16 gi|257388579|ref|YP_003178352.1| - 5.3e-32 110.0 0.2 5.9e-32 109.8 0.2 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0058 HTH_24 PF13412.6 gi|257388580|ref|YP_003178353.1| - 4.5e-05 22.9 0.3 0.0025 17.3 0.1 2.4 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_Tnp_Tc3_2 PF01498.18 gi|257388580|ref|YP_003178353.1| - 0.0025 18.0 0.0 0.0049 17.1 0.0 1.5 1 0 0 1 1 1 1 Transposase HTH_AsnC-type PF13404.6 gi|257388580|ref|YP_003178353.1| - 0.014 15.2 1.2 0.031 14.1 1.2 1.6 1 1 0 1 1 1 0 AsnC-type helix-turn-helix domain HTH_5 PF01022.20 gi|257388580|ref|YP_003178353.1| - 0.024 14.5 0.2 0.16 11.8 0.2 2.1 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_32 PF13565.6 gi|257388580|ref|YP_003178353.1| - 0.033 14.8 0.4 0.06 14.0 0.0 1.6 2 0 0 2 2 2 0 Homeodomain-like domain PheRS_DBD1 PF18552.1 gi|257388580|ref|YP_003178353.1| - 0.054 13.3 0.1 0.097 12.4 0.1 1.4 1 0 0 1 1 1 0 PheRS DNA binding domain 1 Ribonuc_red_sm PF00268.21 gi|257388581|ref|YP_003178354.1| - 9.2e-08 31.9 0.0 1.4e-07 31.2 0.0 1.2 1 0 0 1 1 1 1 Ribonucleotide reductase, small chain ECH_1 PF00378.20 gi|257388582|ref|YP_003178355.1| - 5.2e-48 163.5 0.1 6e-48 163.3 0.1 1.0 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase ECH_2 PF16113.5 gi|257388582|ref|YP_003178355.1| - 1e-31 110.7 0.0 1.3e-31 110.3 0.0 1.1 1 0 0 1 1 1 1 Enoyl-CoA hydratase/isomerase FAD_binding_7 PF03441.14 gi|257388583|ref|YP_003178356.1| - 7.6e-78 260.6 1.9 9.9e-78 260.3 1.9 1.1 1 0 0 1 1 1 1 FAD binding domain of DNA photolyase DNA_photolyase PF00875.18 gi|257388583|ref|YP_003178356.1| - 4e-41 140.8 0.0 6.5e-40 136.8 0.0 2.2 2 0 0 2 2 2 1 DNA photolyase Usp PF00582.26 gi|257388583|ref|YP_003178356.1| - 0.13 12.7 0.1 0.57 10.7 0.0 2.0 2 0 0 2 2 2 0 Universal stress protein family DUF1707 PF08044.11 gi|257388583|ref|YP_003178356.1| - 0.15 12.1 3.0 0.14 12.3 0.7 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF1707) Sod_Fe_N PF00081.22 gi|257388584|ref|YP_003178357.1| - 1.5e-29 102.3 0.3 2.9e-29 101.4 0.3 1.5 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, alpha-hairpin domain Sod_Fe_C PF02777.18 gi|257388584|ref|YP_003178357.1| - 1.6e-28 98.9 0.0 2.4e-28 98.3 0.0 1.3 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, C-terminal domain Lactamase_B PF00753.27 gi|257388586|ref|YP_003178359.1| - 8.6e-20 71.6 8.7 6e-18 65.6 8.7 2.0 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.7 gi|257388586|ref|YP_003178359.1| - 8.4e-06 25.4 0.7 1.2e-05 25.0 0.7 1.3 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_6 PF16661.5 gi|257388586|ref|YP_003178359.1| - 0.0036 16.8 0.0 0.0086 15.5 0.0 1.5 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily domain HalX PF08663.10 gi|257388587|ref|YP_003178360.1| - 4.2e-21 75.0 8.1 4.3e-21 75.0 6.7 1.8 1 1 1 2 2 2 1 HalX domain Response_reg PF00072.24 gi|257388587|ref|YP_003178360.1| - 3.1e-20 72.4 0.1 4.6e-20 71.9 0.1 1.3 1 0 0 1 1 1 1 Response regulator receiver domain RapH_N PF18801.1 gi|257388587|ref|YP_003178360.1| - 0.022 14.8 0.5 0.073 13.2 0.3 1.9 2 0 0 2 2 2 0 response regulator aspartate phosphatase H, N terminal PCRF PF03462.18 gi|257388587|ref|YP_003178360.1| - 0.054 13.4 0.5 0.078 12.8 0.5 1.2 1 0 0 1 1 1 0 PCRF domain MapZ_EC1 PF18041.1 gi|257388587|ref|YP_003178360.1| - 0.13 12.5 4.3 3.7 7.8 0.9 2.2 1 1 1 2 2 2 0 MapZ extracellular domain 1 ATPase PF06745.13 gi|257388588|ref|YP_003178361.1| - 3.6e-05 23.2 0.0 7e-05 22.3 0.0 1.4 1 1 0 1 1 1 1 KaiC FAD-oxidase_C PF02913.19 gi|257388589|ref|YP_003178362.1| - 1.9e-61 207.9 0.0 1.2e-60 205.2 0.1 2.2 2 0 0 2 2 2 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.23 gi|257388589|ref|YP_003178362.1| - 6.7e-40 136.0 1.2 6.7e-40 136.0 1.2 1.9 2 0 0 2 2 2 1 FAD binding domain Fer4_8 PF13183.6 gi|257388589|ref|YP_003178362.1| - 2.7e-09 37.3 4.4 5.8e-09 36.3 4.4 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|257388589|ref|YP_003178362.1| - 4.2e-09 36.8 3.7 8.5e-09 35.8 3.7 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain CCG PF02754.16 gi|257388589|ref|YP_003178362.1| - 6.2e-08 32.7 0.0 6.4e-05 23.1 0.0 2.8 2 0 0 2 2 2 2 Cysteine-rich domain Fer4_9 PF13187.6 gi|257388589|ref|YP_003178362.1| - 0.00034 20.7 1.4 0.027 14.6 0.5 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|257388589|ref|YP_003178362.1| - 0.00043 20.3 4.8 0.0088 16.1 0.4 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Cytokin-bind PF09265.10 gi|257388589|ref|YP_003178362.1| - 0.0013 18.1 0.1 0.0021 17.5 0.1 1.2 1 0 0 1 1 1 1 Cytokinin dehydrogenase 1, FAD and cytokinin binding Fer4_21 PF14697.6 gi|257388589|ref|YP_003178362.1| - 0.014 15.5 1.8 0.15 12.2 0.4 2.5 2 0 0 2 2 2 0 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|257388589|ref|YP_003178362.1| - 0.05 14.2 6.9 0.23 12.1 7.0 2.2 1 1 1 2 2 2 0 4Fe-4S dicluster domain Fer4 PF00037.27 gi|257388589|ref|YP_003178362.1| - 0.34 10.8 14.8 0.071 13.0 4.3 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_6 PF12837.7 gi|257388589|ref|YP_003178362.1| - 3.8 7.7 12.2 0.38 10.9 3.3 2.6 2 0 0 2 2 2 0 4Fe-4S binding domain HTH_IclR PF09339.10 gi|257388590|ref|YP_003178363.1| - 0.0035 17.1 0.0 0.0077 16.0 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain Polbeta PF18765.1 gi|257388591|ref|YP_003178364.1| - 2.2e-09 37.3 0.0 4.6e-09 36.2 0.0 1.6 1 0 0 1 1 1 1 Polymerase beta, Nucleotidyltransferase NTP_transf_2 PF01909.23 gi|257388591|ref|YP_003178364.1| - 9.4e-09 35.4 0.1 1.7e-08 34.6 0.1 1.5 1 0 0 1 1 1 1 Nucleotidyltransferase domain MarR_2 PF12802.7 gi|257388591|ref|YP_003178364.1| - 3.3e-06 26.9 0.0 1.2e-05 25.1 0.0 1.9 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|257388591|ref|YP_003178364.1| - 0.0012 18.9 0.0 0.0034 17.4 0.0 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.6 gi|257388591|ref|YP_003178364.1| - 0.0034 17.9 0.0 0.0085 16.6 0.0 1.7 1 0 0 1 1 1 1 Winged helix DNA-binding domain Adenyl_cycl_N PF12633.7 gi|257388591|ref|YP_003178364.1| - 0.012 15.5 0.0 0.018 14.9 0.0 1.3 1 0 0 1 1 1 0 Adenylate cyclase NT domain MarR PF01047.22 gi|257388591|ref|YP_003178364.1| - 0.019 14.9 0.0 0.053 13.5 0.0 1.8 2 0 0 2 2 2 0 MarR family HTH_5 PF01022.20 gi|257388591|ref|YP_003178364.1| - 0.021 14.7 0.0 0.037 13.9 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family Rrf2 PF02082.20 gi|257388591|ref|YP_003178364.1| - 0.027 14.8 0.0 0.051 13.9 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator HTH_24 PF13412.6 gi|257388591|ref|YP_003178364.1| - 0.034 13.7 0.0 4.8 6.8 0.0 2.4 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding DUF1495 PF07381.11 gi|257388591|ref|YP_003178364.1| - 0.1 12.4 0.0 0.28 11.1 0.0 1.7 2 0 0 2 2 2 0 Winged helix DNA-binding domain (DUF1495) HEPN PF05168.14 gi|257388592|ref|YP_003178365.1| - 0.07 13.3 0.0 0.097 12.8 0.0 1.2 1 0 0 1 1 1 0 HEPN domain VAPB_antitox PF02697.14 gi|257388596|ref|YP_003178369.1| - 4.7e-13 49.7 2.3 6.6e-13 49.2 2.3 1.4 1 1 0 1 1 1 1 Putative antitoxin PIN PF01850.21 gi|257388597|ref|YP_003178370.1| - 7e-14 52.4 0.0 7.9e-14 52.2 0.0 1.0 1 0 0 1 1 1 1 PIN domain Pyr_redox_2 PF07992.14 gi|257388598|ref|YP_003178371.1| - 3.8e-09 36.2 5.3 0.00054 19.3 1.0 2.8 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|257388598|ref|YP_003178371.1| - 3.9e-08 32.9 1.4 4.6e-05 22.8 0.6 2.2 2 0 0 2 2 2 2 FAD binding domain DAO PF01266.24 gi|257388598|ref|YP_003178371.1| - 4.7e-08 33.0 10.1 4.8e-05 23.1 0.5 2.2 1 1 0 2 2 2 2 FAD dependent oxidoreductase Trp_halogenase PF04820.14 gi|257388598|ref|YP_003178371.1| - 2.7e-07 29.8 1.0 1.7e-05 23.9 0.0 2.1 2 0 0 2 2 2 1 Tryptophan halogenase FAD_oxidored PF12831.7 gi|257388598|ref|YP_003178371.1| - 4.3e-05 23.1 1.5 4.3e-05 23.1 1.5 2.0 3 0 0 3 3 3 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|257388598|ref|YP_003178371.1| - 5.6e-05 22.0 3.1 0.035 12.8 2.6 2.2 2 0 0 2 2 2 2 HI0933-like protein FAD_binding_2 PF00890.24 gi|257388598|ref|YP_003178371.1| - 0.0003 20.0 3.8 0.00061 19.0 3.8 1.5 1 0 0 1 1 1 1 FAD binding domain NAD_binding_9 PF13454.6 gi|257388598|ref|YP_003178371.1| - 0.0022 18.0 2.6 0.12 12.4 0.0 2.4 2 0 0 2 2 2 1 FAD-NAD(P)-binding Pyr_redox_3 PF13738.6 gi|257388598|ref|YP_003178371.1| - 0.0038 16.5 2.0 0.0077 15.5 2.0 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|257388598|ref|YP_003178371.1| - 0.011 15.0 0.3 0.022 14.0 0.3 1.5 1 0 0 1 1 1 0 Thi4 family GIDA PF01134.22 gi|257388598|ref|YP_003178371.1| - 0.013 14.6 1.8 0.054 12.6 1.1 1.9 2 0 0 2 2 2 0 Glucose inhibited division protein A NAD_binding_8 PF13450.6 gi|257388598|ref|YP_003178371.1| - 0.016 15.4 0.5 0.042 14.1 0.5 1.7 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain Lycopene_cycl PF05834.12 gi|257388598|ref|YP_003178371.1| - 0.033 13.2 0.6 2.5 7.1 0.8 2.3 2 0 0 2 2 2 0 Lycopene cyclase protein Amino_oxidase PF01593.24 gi|257388598|ref|YP_003178371.1| - 0.055 12.8 0.0 0.11 11.8 0.0 1.5 1 0 0 1 1 1 0 Flavin containing amine oxidoreductase Pyr_redox PF00070.27 gi|257388598|ref|YP_003178371.1| - 0.084 13.4 0.7 18 5.9 0.7 2.5 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase Response_reg PF00072.24 gi|257388599|ref|YP_003178372.1| - 9.9e-19 67.6 0.2 2.5e-18 66.3 0.2 1.6 2 0 0 2 2 2 1 Response regulator receiver domain HalX PF08663.10 gi|257388599|ref|YP_003178372.1| - 2.6e-15 56.5 4.8 5.6e-15 55.4 4.8 1.6 1 0 0 1 1 1 1 HalX domain DUF2857 PF11198.8 gi|257388599|ref|YP_003178372.1| - 0.0074 16.1 0.0 0.01 15.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF2857) 2-Hacid_dh_C PF02826.19 gi|257388600|ref|YP_003178373.1| - 1.3e-51 174.4 0.0 1.9e-51 174.0 0.0 1.2 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 2-Hacid_dh PF00389.30 gi|257388600|ref|YP_003178373.1| - 4.9e-12 45.7 0.0 6.4e-12 45.3 0.0 1.1 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain NAD_binding_2 PF03446.15 gi|257388600|ref|YP_003178373.1| - 1.2e-05 25.6 0.0 2.4e-05 24.6 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase F420_oxidored PF03807.17 gi|257388600|ref|YP_003178373.1| - 0.00049 20.6 0.1 0.0018 18.8 0.0 1.9 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.12 gi|257388600|ref|YP_003178373.1| - 0.0044 16.6 0.1 0.019 14.6 0.0 1.9 2 0 0 2 2 2 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain ThiF PF00899.21 gi|257388600|ref|YP_003178373.1| - 0.006 16.0 0.0 0.012 15.0 0.0 1.4 1 0 0 1 1 1 1 ThiF family Semialdhyde_dh PF01118.24 gi|257388603|ref|YP_003178376.1| - 3.4e-34 117.9 0.0 5.9e-34 117.1 0.0 1.4 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, NAD binding domain Semialdhyde_dhC PF02774.18 gi|257388603|ref|YP_003178376.1| - 1.8e-32 112.9 0.0 2.8e-32 112.3 0.0 1.3 1 0 0 1 1 1 1 Semialdehyde dehydrogenase, dimerisation domain DapB_N PF01113.20 gi|257388603|ref|YP_003178376.1| - 4.6e-05 23.5 0.0 0.00013 22.1 0.0 1.8 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus DXP_reductoisom PF02670.16 gi|257388603|ref|YP_003178376.1| - 0.00075 20.2 0.0 0.0015 19.2 0.0 1.5 1 0 0 1 1 1 1 1-deoxy-D-xylulose 5-phosphate reductoisomerase Sacchrp_dh_NADP PF03435.18 gi|257388603|ref|YP_003178376.1| - 0.0033 17.7 0.0 0.0067 16.7 0.0 1.5 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain GFO_IDH_MocA PF01408.22 gi|257388603|ref|YP_003178376.1| - 0.013 16.3 0.0 0.022 15.6 0.0 1.4 1 0 0 1 1 1 0 Oxidoreductase family, NAD-binding Rossmann fold Gp_dh_C PF02800.20 gi|257388603|ref|YP_003178376.1| - 0.069 12.7 0.0 1.4 8.5 0.0 2.3 2 0 0 2 2 2 0 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain NAD_binding_10 PF13460.6 gi|257388603|ref|YP_003178376.1| - 0.11 12.4 0.0 0.19 11.6 0.0 1.4 1 0 0 1 1 1 0 NAD(P)H-binding tRNA-synt_1b PF00579.25 gi|257388605|ref|YP_003178378.1| - 4.2e-55 187.1 0.0 5.4e-55 186.8 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class I (W and Y) Methyltransf_11 PF08241.12 gi|257388606|ref|YP_003178379.1| - 5.4e-22 78.3 0.1 1.3e-21 77.0 0.1 1.6 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|257388606|ref|YP_003178379.1| - 4e-20 72.3 0.1 8.1e-20 71.3 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|257388606|ref|YP_003178379.1| - 6e-13 49.4 0.1 1.5e-12 48.1 0.1 1.7 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|257388606|ref|YP_003178379.1| - 8.3e-13 48.4 0.0 1.1e-12 48.0 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|257388606|ref|YP_003178379.1| - 1.6e-09 37.8 0.0 1.9e-09 37.6 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|257388606|ref|YP_003178379.1| - 2.6e-09 36.8 0.0 3.6e-09 36.3 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_8 PF05148.15 gi|257388606|ref|YP_003178379.1| - 4.4e-06 26.7 0.0 6.5e-06 26.2 0.0 1.2 1 0 0 1 1 1 1 Hypothetical methyltransferase NodS PF05401.11 gi|257388606|ref|YP_003178379.1| - 9.7e-05 22.1 0.0 0.00012 21.8 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_9 PF08003.11 gi|257388606|ref|YP_003178379.1| - 0.0005 19.1 0.0 0.0006 18.8 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) CMAS PF02353.20 gi|257388606|ref|YP_003178379.1| - 0.0024 17.2 0.0 0.0033 16.7 0.0 1.1 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase MetW PF07021.12 gi|257388606|ref|YP_003178379.1| - 0.019 14.6 0.0 0.024 14.3 0.0 1.2 1 0 0 1 1 1 0 Methionine biosynthesis protein MetW MTS PF05175.14 gi|257388606|ref|YP_003178379.1| - 0.021 14.4 0.0 0.026 14.0 0.0 1.3 1 0 0 1 1 1 0 Methyltransferase small domain PCMT PF01135.19 gi|257388606|ref|YP_003178379.1| - 0.03 14.1 0.0 0.055 13.2 0.0 1.4 1 0 0 1 1 1 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) TPMT PF05724.11 gi|257388606|ref|YP_003178379.1| - 0.039 13.6 0.0 0.058 13.0 0.0 1.4 1 1 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) Methyltransf_32 PF13679.6 gi|257388606|ref|YP_003178379.1| - 0.041 13.9 0.0 0.052 13.5 0.0 1.2 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_5 PF01795.19 gi|257388606|ref|YP_003178379.1| - 0.14 11.7 0.0 0.69 9.4 0.0 1.8 2 0 0 2 2 2 0 MraW methylase family T2SS_PulS_OutS PF09691.10 gi|257388606|ref|YP_003178379.1| - 0.21 11.8 0.0 0.32 11.2 0.0 1.3 1 0 0 1 1 1 0 Type II secretion system pilotin lipoprotein (PulS_OutS) HD PF01966.22 gi|257388608|ref|YP_003178381.1| - 3e-09 37.1 2.3 5.7e-09 36.3 2.3 1.5 1 0 0 1 1 1 1 HD domain Gly-zipper_YMGG PF13441.6 gi|257388609|ref|YP_003178382.1| - 5.6e-06 26.0 10.7 8.5e-06 25.4 10.7 1.3 1 0 0 1 1 1 1 YMGG-like Gly-zipper Rick_17kDa_Anti PF05433.15 gi|257388609|ref|YP_003178382.1| - 2.2e-05 24.2 10.9 2.8e-05 23.9 10.9 1.2 1 0 0 1 1 1 1 Glycine zipper 2TM domain Gly-zipper_Omp PF13488.6 gi|257388609|ref|YP_003178382.1| - 0.00054 19.9 12.8 0.0022 18.0 13.2 1.7 1 1 0 1 1 1 1 Glycine zipper DUF3482 PF11981.8 gi|257388609|ref|YP_003178382.1| - 0.00077 18.9 1.7 0.00087 18.8 1.7 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF3482) DUF456 PF04306.13 gi|257388609|ref|YP_003178382.1| - 0.015 15.6 0.2 0.018 15.4 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF456) TraT PF05818.12 gi|257388609|ref|YP_003178382.1| - 0.015 15.0 0.6 0.016 14.9 0.6 1.1 1 0 0 1 1 1 0 Enterobacterial TraT complement resistance protein DUF4514 PF14986.6 gi|257388609|ref|YP_003178382.1| - 0.18 11.8 0.2 0.18 11.8 0.2 1.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4514) Gly-zipper_OmpA PF13436.6 gi|257388609|ref|YP_003178382.1| - 0.52 10.1 20.3 1.8 8.4 20.4 1.6 1 1 0 1 1 1 0 Glycine-zipper domain SNF PF00209.18 gi|257388610|ref|YP_003178383.1| - 2e-54 185.2 31.2 9.5e-32 110.4 15.0 2.0 2 0 0 2 2 2 2 Sodium:neurotransmitter symporter family UDG PF03167.19 gi|257388611|ref|YP_003178384.1| - 1.4e-09 38.1 0.0 1.6e-09 37.9 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily DUF4918 PF16265.5 gi|257388611|ref|YP_003178384.1| - 0.28 10.7 0.0 0.4 10.2 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4918) DAO PF01266.24 gi|257388612|ref|YP_003178385.1| - 1.3e-52 179.5 5.8 1.5e-52 179.3 5.8 1.1 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|257388612|ref|YP_003178385.1| - 6.8e-09 35.4 1.4 1.5e-08 34.3 1.4 1.6 1 1 0 1 1 1 1 FAD binding domain Pyr_redox_2 PF07992.14 gi|257388612|ref|YP_003178385.1| - 3.6e-05 23.1 0.1 0.00011 21.5 0.1 1.7 1 1 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|257388612|ref|YP_003178385.1| - 0.00045 19.4 5.3 0.0013 17.9 5.3 1.7 1 1 0 1 1 1 1 FAD binding domain Pyr_redox PF00070.27 gi|257388612|ref|YP_003178385.1| - 0.00084 19.8 0.9 0.045 14.3 1.6 2.6 3 0 0 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase 3HCDH_N PF02737.18 gi|257388612|ref|YP_003178385.1| - 0.0033 17.3 0.5 0.061 13.2 0.5 2.4 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NAD_binding_8 PF13450.6 gi|257388612|ref|YP_003178385.1| - 0.059 13.6 5.7 0.11 12.8 4.3 2.2 3 0 0 3 3 3 0 NAD(P)-binding Rossmann-like domain Pyr_redox_3 PF13738.6 gi|257388612|ref|YP_003178385.1| - 0.059 12.6 0.1 0.092 12.0 0.1 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|257388612|ref|YP_003178385.1| - 0.12 11.1 2.1 0.54 8.9 1.6 1.9 2 0 0 2 2 2 0 HI0933-like protein FAD_oxidored PF12831.7 gi|257388612|ref|YP_003178385.1| - 1.4 8.2 8.3 25 4.0 8.1 2.1 1 1 0 1 1 1 0 FAD dependent oxidoreductase Carboxyl_trans PF01039.22 gi|257388613|ref|YP_003178386.1| - 2.2e-194 646.7 0.1 2.5e-194 646.6 0.1 1.0 1 0 0 1 1 1 1 Carboxyl transferase domain MdcE PF06833.11 gi|257388613|ref|YP_003178386.1| - 0.0065 16.0 0.3 0.08 12.4 0.0 2.2 2 0 0 2 2 2 1 Malonate decarboxylase gamma subunit (MdcE) SBP_bac_8 PF13416.6 gi|257388614|ref|YP_003178387.1| - 1.5e-12 48.0 0.0 2.2e-12 47.4 0.0 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|257388614|ref|YP_003178387.1| - 5.2e-06 26.6 0.0 7.9e-06 26.0 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Pept_S41_N PF18294.1 gi|257388614|ref|YP_003178387.1| - 0.15 12.1 0.0 0.41 10.7 0.0 1.7 1 0 0 1 1 1 0 Peptidase S41 N-terminal domain CPSase_L_D2 PF02786.17 gi|257388615|ref|YP_003178388.1| - 4.9e-69 232.0 0.0 1.2e-68 230.8 0.0 1.6 1 0 0 1 1 1 1 Carbamoyl-phosphate synthase L chain, ATP binding domain Biotin_carb_N PF00289.22 gi|257388615|ref|YP_003178388.1| - 6.5e-45 152.2 0.3 1.3e-44 151.3 0.3 1.5 1 0 0 1 1 1 1 Biotin carboxylase, N-terminal domain Biotin_carb_C PF02785.19 gi|257388615|ref|YP_003178388.1| - 5.7e-35 119.7 0.0 1.2e-34 118.7 0.0 1.6 1 0 0 1 1 1 1 Biotin carboxylase C-terminal domain Biotin_lipoyl PF00364.22 gi|257388615|ref|YP_003178388.1| - 5.1e-18 64.7 5.8 1.8e-17 62.9 5.8 2.0 2 0 0 2 2 2 1 Biotin-requiring enzyme Biotin_lipoyl_2 PF13533.6 gi|257388615|ref|YP_003178388.1| - 7.2e-08 32.1 7.1 5e-05 23.1 0.1 3.0 2 1 1 3 3 3 2 Biotin-lipoyl like ATP-grasp PF02222.22 gi|257388615|ref|YP_003178388.1| - 1.2e-05 24.9 0.0 2.8e-05 23.7 0.0 1.6 1 0 0 1 1 1 1 ATP-grasp domain HlyD_3 PF13437.6 gi|257388615|ref|YP_003178388.1| - 0.00018 22.2 1.0 0.29 11.8 0.0 2.7 2 0 0 2 2 2 2 HlyD family secretion protein GARS_A PF01071.19 gi|257388615|ref|YP_003178388.1| - 0.00065 19.5 0.0 0.0013 18.5 0.0 1.5 1 0 0 1 1 1 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Dala_Dala_lig_C PF07478.13 gi|257388615|ref|YP_003178388.1| - 0.00082 19.0 0.0 0.0017 17.9 0.0 1.6 1 0 0 1 1 1 1 D-ala D-ala ligase C-terminus HlyD_D23 PF16576.5 gi|257388615|ref|YP_003178388.1| - 0.00096 18.4 1.1 0.42 9.8 0.1 2.3 1 1 1 2 2 2 2 Barrel-sandwich domain of CusB or HlyD membrane-fusion GCV_H PF01597.19 gi|257388615|ref|YP_003178388.1| - 0.025 14.5 1.5 0.071 13.0 1.5 1.7 1 0 0 1 1 1 0 Glycine cleavage H-protein PTS_EIIA_1 PF00358.20 gi|257388615|ref|YP_003178388.1| - 0.066 13.0 1.0 0.26 11.0 0.1 2.3 2 1 1 3 3 3 0 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 NQRA PF05896.11 gi|257388615|ref|YP_003178388.1| - 0.067 12.6 0.9 0.32 10.4 0.4 2.0 2 0 0 2 2 2 0 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) CoA_binding_2 PF13380.6 gi|257388615|ref|YP_003178388.1| - 0.12 12.9 0.4 0.31 11.5 0.2 1.8 1 1 0 1 1 1 0 CoA binding domain YqfD PF06898.11 gi|257388615|ref|YP_003178388.1| - 7.8 5.2 6.2 4.5 6.0 3.0 2.1 2 1 0 2 2 2 0 Putative stage IV sporulation protein YqfD BPL_LplA_LipB PF03099.19 gi|257388616|ref|YP_003178389.1| - 1.4e-16 60.6 0.0 2e-16 60.1 0.0 1.2 1 0 0 1 1 1 1 Biotin/lipoate A/B protein ligase family BPL_C PF02237.17 gi|257388616|ref|YP_003178389.1| - 2.2e-11 43.5 0.2 4.3e-11 42.5 0.2 1.5 1 0 0 1 1 1 1 Biotin protein ligase C terminal domain HTH_11 PF08279.12 gi|257388616|ref|YP_003178389.1| - 4.3e-11 42.6 0.0 1e-10 41.4 0.0 1.7 2 0 0 2 2 2 1 HTH domain HTH_20 PF12840.7 gi|257388616|ref|YP_003178389.1| - 0.00044 20.3 0.1 0.0024 17.9 0.0 2.1 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|257388616|ref|YP_003178389.1| - 0.00085 18.8 0.0 0.0024 17.4 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|257388616|ref|YP_003178389.1| - 0.0017 18.2 0.4 0.0062 16.4 0.1 2.2 2 0 0 2 2 2 1 MarR family HTH_5 PF01022.20 gi|257388616|ref|YP_003178389.1| - 0.0047 16.8 0.0 0.0083 16.0 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family DUF2642 PF10842.8 gi|257388616|ref|YP_003178389.1| - 0.087 12.7 1.5 0.26 11.2 0.1 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF2642) Fe_dep_repress PF01325.19 gi|257388616|ref|YP_003178389.1| - 0.091 13.0 0.0 0.15 12.3 0.0 1.3 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_AsnC-type PF13404.6 gi|257388616|ref|YP_003178389.1| - 0.19 11.6 2.7 0.64 9.9 0.1 3.0 3 0 0 3 3 3 0 AsnC-type helix-turn-helix domain HTH_1 PF00126.27 gi|257388616|ref|YP_003178389.1| - 0.36 10.8 3.3 0.65 10.0 0.1 2.3 2 0 0 2 2 2 0 Bacterial regulatory helix-turn-helix protein, lysR family Usp PF00582.26 gi|257388617|ref|YP_003178390.1| - 2.5e-35 122.0 1.5 2.9e-35 121.9 1.5 1.0 1 0 0 1 1 1 1 Universal stress protein family DUF2827 PF10933.8 gi|257388617|ref|YP_003178390.1| - 0.16 10.6 0.0 0.2 10.3 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2827) Amidohydro_1 PF01979.20 gi|257388618|ref|YP_003178391.1| - 3.5e-29 102.2 0.3 1.2e-19 70.8 0.1 2.1 1 1 1 2 2 2 2 Amidohydrolase family A_deaminase PF00962.22 gi|257388618|ref|YP_003178391.1| - 6.9e-07 28.9 0.0 9.8e-07 28.4 0.0 1.1 1 0 0 1 1 1 1 Adenosine/AMP deaminase Amidohydro_3 PF07969.11 gi|257388618|ref|YP_003178391.1| - 3.4e-05 23.5 3.2 3.4e-05 23.5 3.2 2.3 1 1 2 3 3 3 2 Amidohydrolase family HD PF01966.22 gi|257388619|ref|YP_003178392.1| - 2.2e-10 40.8 5.9 5e-10 39.6 5.9 1.7 1 0 0 1 1 1 1 HD domain DSPc PF00782.20 gi|257388620|ref|YP_003178393.1| - 3.1e-09 36.7 0.0 3.6e-09 36.5 0.0 1.1 1 0 0 1 1 1 1 Dual specificity phosphatase, catalytic domain Y_phosphatase PF00102.27 gi|257388620|ref|YP_003178393.1| - 2.2e-05 24.2 0.0 2.9e-05 23.8 0.0 1.2 1 0 0 1 1 1 1 Protein-tyrosine phosphatase Y_phosphatase3 PF13350.6 gi|257388620|ref|YP_003178393.1| - 0.0054 16.7 0.1 0.0066 16.4 0.1 1.3 1 1 0 1 1 1 1 Tyrosine phosphatase family PTPlike_phytase PF14566.6 gi|257388620|ref|YP_003178393.1| - 0.035 14.2 0.0 0.052 13.7 0.0 1.2 1 0 0 1 1 1 0 Inositol hexakisphosphate CDKN3 PF05706.12 gi|257388620|ref|YP_003178393.1| - 0.037 13.7 0.0 0.045 13.4 0.0 1.2 1 0 0 1 1 1 0 Cyclin-dependent kinase inhibitor 3 (CDKN3) UPF0052 PF01933.18 gi|257388621|ref|YP_003178394.1| - 3.8e-44 151.1 0.0 4.8e-44 150.7 0.0 1.1 1 0 0 1 1 1 1 Uncharacterised protein family UPF0052 HCBP_related PF06594.11 gi|257388621|ref|YP_003178394.1| - 0.34 10.9 2.9 2.7 8.0 0.0 2.9 3 0 0 3 3 3 0 Haemolysin-type calcium binding protein related domain Dus PF01207.17 gi|257388622|ref|YP_003178395.1| - 8.2e-12 44.8 1.4 4.7e-11 42.3 1.4 1.8 1 1 0 1 1 1 1 Dihydrouridine synthase (Dus) His_biosynth PF00977.21 gi|257388622|ref|YP_003178395.1| - 0.023 14.2 0.1 0.049 13.1 0.1 1.5 1 1 0 1 1 1 0 Histidine biosynthesis protein Arg_repressor_C PF02863.18 gi|257388622|ref|YP_003178395.1| - 0.028 14.3 0.1 0.059 13.2 0.1 1.5 1 0 0 1 1 1 0 Arginine repressor, C-terminal domain Ribul_P_3_epim PF00834.19 gi|257388622|ref|YP_003178395.1| - 0.044 13.2 0.1 0.13 11.6 0.1 1.7 1 1 1 2 2 2 0 Ribulose-phosphate 3 epimerase family Radical_SAM PF04055.21 gi|257388622|ref|YP_003178395.1| - 0.083 13.3 0.2 4.5 7.6 0.0 2.4 1 1 1 3 3 3 0 Radical SAM superfamily NmrA PF05368.13 gi|257388622|ref|YP_003178395.1| - 0.14 11.7 0.5 0.21 11.1 0.5 1.2 1 0 0 1 1 1 0 NmrA-like family CitG PF01874.16 gi|257388623|ref|YP_003178396.1| - 2.2e-69 234.2 4.6 2.5e-69 234.1 4.6 1.0 1 0 0 1 1 1 1 ATP:dephospho-CoA triphosphoribosyl transferase DUF1604 PF07713.13 gi|257388623|ref|YP_003178396.1| - 0.03 14.1 0.1 0.062 13.1 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1604) DUF447 PF04289.12 gi|257388624|ref|YP_003178397.1| - 1e-45 155.7 0.2 1.2e-45 155.5 0.2 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF447) DinB_2 PF12867.7 gi|257388624|ref|YP_003178397.1| - 0.19 12.2 2.1 2.9 8.4 2.1 2.1 1 1 0 1 1 1 0 DinB superfamily Ribosomal_S17e PF00833.18 gi|257388625|ref|YP_003178398.1| - 3.1e-12 46.5 0.0 3.6e-12 46.3 0.0 1.0 1 0 0 1 1 1 1 Ribosomal S17 DZR PF12773.7 gi|257388626|ref|YP_003178399.1| - 2.5e-05 24.2 0.2 3.6e-05 23.7 0.2 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|257388626|ref|YP_003178399.1| - 3.1e-05 23.5 1.1 4.2e-05 23.1 1.1 1.2 1 0 0 1 1 1 1 zinc-ribbon domain zf-ribbon_3 PF13248.6 gi|257388626|ref|YP_003178399.1| - 0.00063 19.1 1.6 0.00099 18.4 1.6 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|257388626|ref|YP_003178399.1| - 0.0038 18.0 0.1 0.0051 17.5 0.1 1.2 1 0 0 1 1 1 1 zinc-ribbon family TM2 PF05154.16 gi|257388626|ref|YP_003178399.1| - 0.0085 16.4 0.5 0.015 15.6 0.5 1.4 1 0 0 1 1 1 1 TM2 domain zf-RING_7 PF02591.15 gi|257388626|ref|YP_003178399.1| - 0.016 15.4 0.1 0.035 14.3 0.1 1.5 1 0 0 1 1 1 0 C4-type zinc ribbon domain Sgf11 PF08209.11 gi|257388626|ref|YP_003178399.1| - 0.047 13.2 0.0 0.077 12.6 0.0 1.3 1 0 0 1 1 1 0 Sgf11 (transcriptional regulation protein) GTA_holin_3TM PF11351.8 gi|257388626|ref|YP_003178399.1| - 0.067 13.7 2.1 0.079 13.5 1.5 1.4 1 1 0 1 1 1 0 Holin of 3TMs, for gene-transfer release DUF2474 PF10617.9 gi|257388626|ref|YP_003178399.1| - 0.092 12.6 2.1 0.092 12.6 2.1 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2474) Zn-ribbon_8 PF09723.10 gi|257388626|ref|YP_003178399.1| - 0.14 12.3 0.9 0.48 10.6 0.1 2.0 1 1 1 2 2 2 0 Zinc ribbon domain DUF2116 PF09889.9 gi|257388626|ref|YP_003178399.1| - 3.4 7.7 5.1 0.8 9.7 1.5 1.7 2 0 0 2 2 2 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) ParA PF10609.9 gi|257388627|ref|YP_003178400.1| - 3.4e-99 331.3 0.0 4.2e-99 331.0 0.0 1.1 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|257388627|ref|YP_003178400.1| - 5.2e-14 52.4 0.0 6.2e-13 48.9 0.0 2.2 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain FeS_assembly_P PF01883.19 gi|257388627|ref|YP_003178400.1| - 9e-13 48.2 2.8 1.1e-12 47.9 1.3 1.9 2 0 0 2 2 2 1 Iron-sulfur cluster assembly protein AAA_31 PF13614.6 gi|257388627|ref|YP_003178400.1| - 3.2e-09 37.0 1.2 5.5e-08 32.9 1.2 2.1 1 1 0 1 1 1 1 AAA domain MipZ PF09140.11 gi|257388627|ref|YP_003178400.1| - 5.3e-07 29.2 0.0 8.3e-07 28.5 0.0 1.3 1 0 0 1 1 1 1 ATPase MipZ ArsA_ATPase PF02374.15 gi|257388627|ref|YP_003178400.1| - 0.00033 19.9 2.5 0.00039 19.7 0.6 1.9 2 0 0 2 2 2 1 Anion-transporting ATPase VirC1 PF07015.11 gi|257388627|ref|YP_003178400.1| - 0.003 16.9 0.0 0.0048 16.2 0.0 1.3 1 0 0 1 1 1 1 VirC1 protein AAA_25 PF13481.6 gi|257388627|ref|YP_003178400.1| - 0.0045 16.6 0.0 0.0078 15.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain Fer4_NifH PF00142.18 gi|257388627|ref|YP_003178400.1| - 0.009 15.5 0.0 0.04 13.3 0.1 1.8 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family TF_Zn_Ribbon PF08271.12 gi|257388627|ref|YP_003178400.1| - 0.1 12.1 0.1 0.3 10.7 0.1 1.8 1 0 0 1 1 1 0 TFIIB zinc-binding RsgA_GTPase PF03193.16 gi|257388627|ref|YP_003178400.1| - 0.16 11.9 0.0 0.25 11.2 0.0 1.2 1 0 0 1 1 1 0 RsgA GTPase CBP_BcsQ PF06564.12 gi|257388627|ref|YP_003178400.1| - 0.17 11.4 0.6 0.3 10.5 0.2 1.6 2 0 0 2 2 2 0 Cellulose biosynthesis protein BcsQ CLP1_P PF16575.5 gi|257388627|ref|YP_003178400.1| - 0.18 11.6 0.0 0.3 10.9 0.0 1.3 1 0 0 1 1 1 0 mRNA cleavage and polyadenylation factor CLP1 P-loop DUF1610 PF07754.11 gi|257388627|ref|YP_003178400.1| - 0.26 11.3 0.8 1.1 9.3 0.3 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF1610) Shadoo PF14999.6 gi|257388628|ref|YP_003178401.1| - 0.045 13.8 0.0 0.051 13.7 0.0 1.1 1 0 0 1 1 1 0 Shadow of prion protein, neuroprotective Ribosomal_S13 PF00416.22 gi|257388629|ref|YP_003178402.1| - 3.1e-45 153.7 3.7 3.9e-45 153.4 3.7 1.1 1 0 0 1 1 1 1 Ribosomal protein S13/S18 FbpA PF05833.11 gi|257388629|ref|YP_003178402.1| - 0.0044 15.8 0.0 0.0044 15.8 0.0 1.2 1 0 0 1 1 1 1 Fibronectin-binding protein A N-terminus (FbpA) S4 PF01479.25 gi|257388630|ref|YP_003178403.1| - 2.1e-13 49.7 0.8 1.2e-12 47.3 0.0 2.2 2 0 0 2 2 2 1 S4 domain Ribosomal_S4 PF00163.19 gi|257388630|ref|YP_003178403.1| - 2.5e-05 25.1 1.1 4.9e-05 24.2 0.5 1.8 1 1 1 2 2 2 1 Ribosomal protein S4/S9 N-terminal domain Ribosomal_S11 PF00411.19 gi|257388631|ref|YP_003178404.1| - 7.6e-48 161.5 2.6 1e-47 161.0 2.6 1.2 1 0 0 1 1 1 1 Ribosomal protein S11 Ribosomal_L18p PF00861.22 gi|257388631|ref|YP_003178404.1| - 0.00055 20.3 0.2 0.00078 19.8 0.2 1.2 1 0 0 1 1 1 1 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast RNA_pol_A_bac PF01000.26 gi|257388632|ref|YP_003178405.1| - 9.1e-20 71.1 0.0 3.3e-19 69.3 0.0 1.8 1 1 0 1 1 1 1 RNA polymerase Rpb3/RpoA insert domain RNA_pol_L PF01193.24 gi|257388632|ref|YP_003178405.1| - 1.6e-13 49.8 0.0 2.1e-13 49.5 0.0 1.2 1 0 0 1 1 1 1 RNA polymerase Rpb3/Rpb11 dimerisation domain Ribosomal_L21e PF01157.18 gi|257388632|ref|YP_003178405.1| - 0.045 13.6 0.0 1.7 8.6 0.0 2.4 2 0 0 2 2 2 0 Ribosomal protein L21e Ribosomal_L27A PF00828.19 gi|257388633|ref|YP_003178406.1| - 1.4e-05 25.7 0.3 4.3e-05 24.2 0.3 1.6 1 1 0 1 1 1 1 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Ribosomal_L18 PF17135.4 gi|257388633|ref|YP_003178406.1| - 7.2e-05 22.3 0.0 7.6e-05 22.2 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein 60S L18 and 50S L18e Ribosomal_L13 PF00572.18 gi|257388634|ref|YP_003178407.1| - 1.2e-08 35.2 0.2 3.2e-06 27.4 0.2 2.4 1 1 0 1 1 1 1 Ribosomal protein L13 Ribosomal_S9 PF00380.19 gi|257388635|ref|YP_003178408.1| - 9.1e-31 106.9 0.1 1e-30 106.7 0.1 1.0 1 0 0 1 1 1 1 Ribosomal protein S9/S16 Cupin_6 PF12852.7 gi|257388635|ref|YP_003178408.1| - 0.031 14.0 0.1 0.038 13.7 0.1 1.1 1 0 0 1 1 1 0 Cupin RNA_pol_N PF01194.17 gi|257388636|ref|YP_003178409.1| - 1.1e-27 96.1 0.3 1.2e-27 95.9 0.3 1.0 1 0 0 1 1 1 1 RNA polymerases N / 8 kDa subunit RNA_pol_Rpb6 PF01192.22 gi|257388637|ref|YP_003178410.1| - 5.2e-11 42.3 0.0 6.3e-11 42.0 0.0 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb6 Enolase_C PF00113.22 gi|257388638|ref|YP_003178411.1| - 3.4e-76 256.3 1.6 5e-76 255.8 1.6 1.2 1 0 0 1 1 1 1 Enolase, C-terminal TIM barrel domain Enolase_N PF03952.16 gi|257388638|ref|YP_003178411.1| - 2.2e-33 115.2 0.2 7.6e-33 113.5 0.2 2.0 1 1 0 1 1 1 1 Enolase, N-terminal domain MR_MLE_C PF13378.6 gi|257388638|ref|YP_003178411.1| - 5.4e-11 42.5 0.2 1.2e-10 41.3 0.2 1.6 1 0 0 1 1 1 1 Enolase C-terminal domain-like MAAL_C PF07476.11 gi|257388638|ref|YP_003178411.1| - 1.8e-06 27.3 0.4 3.4e-06 26.4 0.4 1.4 1 0 0 1 1 1 1 Methylaspartate ammonia-lyase C-terminus Ribosomal_S2 PF00318.20 gi|257388639|ref|YP_003178412.1| - 4.7e-23 81.6 0.1 1.2e-13 50.8 0.7 2.1 2 0 0 2 2 2 2 Ribosomal protein S2 DUF5518 PF17647.1 gi|257388640|ref|YP_003178413.1| - 5.6e-15 55.5 32.4 6.5e-15 55.3 32.4 1.0 1 0 0 1 1 1 1 Family of unknown function (DUF5518) Gly-zipper_YMGG PF13441.6 gi|257388640|ref|YP_003178413.1| - 0.024 14.4 2.6 0.024 14.4 2.6 3.7 3 1 0 3 3 3 0 YMGG-like Gly-zipper Gly-zipper_Omp PF13488.6 gi|257388640|ref|YP_003178413.1| - 0.033 14.2 2.8 0.033 14.2 2.8 4.0 4 1 0 4 4 4 0 Glycine zipper ABC_tran_2 PF16949.5 gi|257388640|ref|YP_003178413.1| - 0.12 11.2 4.7 0.14 10.9 4.7 1.1 1 0 0 1 1 1 0 Putative ATP-binding cassette DUF5518 PF17647.1 gi|257388641|ref|YP_003178414.1| - 5.4e-13 49.1 22.5 6e-13 49.0 22.5 1.0 1 0 0 1 1 1 1 Family of unknown function (DUF5518) p450 PF00067.22 gi|257388642|ref|YP_003178415.1| - 1.2e-96 324.2 0.0 1.5e-96 324.0 0.0 1.0 1 0 0 1 1 1 1 Cytochrome P450 TetR_C_15 PF17918.1 gi|257388642|ref|YP_003178415.1| - 1.4 9.7 5.7 21 5.9 0.3 4.1 4 0 0 4 4 4 0 Tetracyclin repressor-like, C-terminal domain Acetyltransf_1 PF00583.25 gi|257388643|ref|YP_003178416.1| - 5.4e-17 62.1 0.0 6.9e-17 61.8 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|257388643|ref|YP_003178416.1| - 2.7e-11 43.7 0.0 4.8e-11 42.9 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|257388643|ref|YP_003178416.1| - 1.4e-10 41.2 0.0 2.6e-10 40.3 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|257388643|ref|YP_003178416.1| - 5e-06 27.2 0.0 5.9e-06 27.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|257388643|ref|YP_003178416.1| - 0.00011 22.3 0.0 0.00015 22.0 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|257388643|ref|YP_003178416.1| - 0.016 15.1 0.0 0.031 14.2 0.0 1.4 1 0 0 1 1 1 0 FR47-like protein Acetyltransf_9 PF13527.7 gi|257388643|ref|YP_003178416.1| - 0.018 15.1 0.0 0.042 13.9 0.0 1.7 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|257388643|ref|YP_003178416.1| - 0.045 13.9 0.0 0.073 13.2 0.0 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase GHMP_kinases_N PF00288.26 gi|257388644|ref|YP_003178417.1| - 8.1e-14 51.6 1.6 1.9e-13 50.4 0.9 2.0 2 0 0 2 2 2 1 GHMP kinases N terminal domain GHMP_kinases_C PF08544.13 gi|257388644|ref|YP_003178417.1| - 2.8e-12 46.8 4.5 1.1e-11 44.9 0.5 2.6 2 1 0 2 2 2 1 GHMP kinases C terminal GalKase_gal_bdg PF10509.9 gi|257388644|ref|YP_003178417.1| - 5.9e-05 22.5 0.1 0.00031 20.2 0.1 2.0 2 0 0 2 2 2 1 Galactokinase galactose-binding signature AA_kinase PF00696.28 gi|257388645|ref|YP_003178418.1| - 4.3e-39 134.5 7.0 5.2e-39 134.3 7.0 1.0 1 0 0 1 1 1 1 Amino acid kinase family DUF3561 PF12084.8 gi|257388645|ref|YP_003178418.1| - 0.098 12.7 0.0 0.17 11.9 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3561) Lactamase_B_2 PF12706.7 gi|257388647|ref|YP_003178420.1| - 1.4e-09 37.7 0.3 7.9e-08 32.1 0.0 2.5 3 0 0 3 3 3 2 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|257388647|ref|YP_003178420.1| - 3.3e-08 33.8 1.6 5e-08 33.2 0.8 1.8 2 0 0 2 2 2 1 Metallo-beta-lactamase superfamily RMMBL PF07521.12 gi|257388647|ref|YP_003178420.1| - 0.0011 18.9 0.3 0.051 13.5 0.0 2.7 2 0 0 2 2 2 1 Zn-dependent metallo-hydrolase RNA specificity domain polyprenyl_synt PF00348.17 gi|257388648|ref|YP_003178421.1| - 5.2e-63 212.5 0.3 6e-63 212.3 0.3 1.1 1 0 0 1 1 1 1 Polyprenyl synthetase tRNA-synt_1c PF00749.21 gi|257388649|ref|YP_003178422.1| - 1.9e-55 188.0 0.0 2.4e-55 187.7 0.0 1.1 1 0 0 1 1 1 1 tRNA synthetases class I (E and Q), catalytic domain tRNA-synt_1c_C PF03950.18 gi|257388649|ref|YP_003178422.1| - 6.6e-13 48.9 0.0 4.2e-12 46.3 0.0 2.1 1 1 0 1 1 1 1 tRNA synthetases class I (E and Q), anti-codon binding domain tRNA-synt_1e PF01406.19 gi|257388649|ref|YP_003178422.1| - 0.15 11.4 0.0 0.27 10.5 0.0 1.3 1 0 0 1 1 1 0 tRNA synthetases class I (C) catalytic domain DZR PF12773.7 gi|257388650|ref|YP_003178423.1| - 0.013 15.5 2.4 0.017 15.1 2.4 1.3 1 0 0 1 1 1 0 Double zinc ribbon Nudix_N_2 PF14803.6 gi|257388650|ref|YP_003178423.1| - 0.024 14.5 5.5 0.047 13.6 5.5 1.5 1 0 0 1 1 1 0 Nudix N-terminal Zn-ribbon_8 PF09723.10 gi|257388650|ref|YP_003178423.1| - 0.25 11.5 5.3 0.56 10.4 5.3 1.7 1 1 0 1 1 1 0 Zinc ribbon domain Abhydrolase_3 PF07859.13 gi|257388651|ref|YP_003178424.1| - 8.4e-24 84.6 2.8 2.9e-23 82.9 2.8 1.7 1 1 0 1 1 1 1 alpha/beta hydrolase fold COesterase PF00135.28 gi|257388651|ref|YP_003178424.1| - 4.8e-13 48.8 0.0 9.9e-13 47.8 0.0 1.3 1 1 0 1 1 1 1 Carboxylesterase family Peptidase_S9 PF00326.21 gi|257388651|ref|YP_003178424.1| - 1.2e-12 47.8 0.3 3.1e-11 43.2 0.3 2.6 1 1 0 1 1 1 1 Prolyl oligopeptidase family Esterase_phd PF10503.9 gi|257388651|ref|YP_003178424.1| - 6.4e-06 25.8 4.1 0.00032 20.3 4.1 2.8 1 1 0 1 1 1 1 Esterase PHB depolymerase Hydrolase_4 PF12146.8 gi|257388651|ref|YP_003178424.1| - 7.1e-06 25.5 0.1 0.025 13.8 0.0 2.5 2 1 0 2 2 2 2 Serine aminopeptidase, S33 DLH PF01738.18 gi|257388651|ref|YP_003178424.1| - 1.1e-05 25.1 1.3 0.034 13.7 1.3 3.1 1 1 0 1 1 1 1 Dienelactone hydrolase family Abhydrolase_4 PF08386.10 gi|257388651|ref|YP_003178424.1| - 0.00047 20.2 0.0 0.00084 19.4 0.0 1.4 1 0 0 1 1 1 1 TAP-like protein Abhydrolase_1 PF00561.20 gi|257388651|ref|YP_003178424.1| - 0.0033 17.1 0.0 0.39 10.3 0.0 2.2 2 0 0 2 2 2 1 alpha/beta hydrolase fold FSH1 PF03959.13 gi|257388651|ref|YP_003178424.1| - 0.0074 16.0 0.0 0.018 14.7 0.0 1.6 1 1 0 1 1 1 1 Serine hydrolase (FSH1) Chlorophyllase2 PF12740.7 gi|257388651|ref|YP_003178424.1| - 0.014 14.4 0.0 0.02 13.8 0.0 1.2 1 0 0 1 1 1 0 Chlorophyllase enzyme Abhydrolase_5 PF12695.7 gi|257388651|ref|YP_003178424.1| - 0.014 15.2 0.0 0.57 9.9 0.0 2.3 2 0 0 2 2 2 0 Alpha/beta hydrolase family LIP PF03583.14 gi|257388651|ref|YP_003178424.1| - 0.014 14.7 1.7 1.3 8.3 0.0 2.1 2 0 0 2 2 2 0 Secretory lipase UPF0227 PF05728.12 gi|257388651|ref|YP_003178424.1| - 0.026 14.5 0.0 0.037 14.0 0.0 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0227) Abhydrolase_2 PF02230.16 gi|257388651|ref|YP_003178424.1| - 0.029 14.2 0.0 6.2 6.5 0.0 2.7 2 1 0 3 3 3 0 Phospholipase/Carboxylesterase Chlorophyllase PF07224.11 gi|257388651|ref|YP_003178424.1| - 0.13 11.3 0.0 0.17 10.8 0.0 1.2 1 0 0 1 1 1 0 Chlorophyllase Fer4_7 PF12838.7 gi|257388652|ref|YP_003178425.1| - 5.4e-13 49.3 21.4 1.4e-07 32.0 7.4 2.0 1 1 2 3 3 3 3 4Fe-4S dicluster domain Fer4 PF00037.27 gi|257388652|ref|YP_003178425.1| - 2.7e-12 46.0 14.5 1e-07 31.5 4.5 2.3 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_9 PF13187.6 gi|257388652|ref|YP_003178425.1| - 2.5e-08 34.0 4.5 4.2e-08 33.2 4.5 1.4 1 1 0 1 1 1 1 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|257388652|ref|YP_003178425.1| - 2.4e-07 30.7 18.6 2.7e-05 24.2 8.4 2.1 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|257388652|ref|YP_003178425.1| - 6.3e-07 29.2 14.7 1.6e-05 24.7 5.3 2.4 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_16 PF13484.6 gi|257388652|ref|YP_003178425.1| - 1.1e-06 29.4 4.4 0.00029 21.7 1.0 2.7 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_21 PF14697.6 gi|257388652|ref|YP_003178425.1| - 1.2e-06 28.6 11.2 4.6e-06 26.7 11.3 1.8 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_17 PF13534.6 gi|257388652|ref|YP_003178425.1| - 7.9e-06 26.3 1.2 0.029 14.9 0.6 2.2 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_2 PF12797.7 gi|257388652|ref|YP_003178425.1| - 3.7e-05 23.5 10.0 0.002 18.1 2.8 2.6 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_8 PF13183.6 gi|257388652|ref|YP_003178425.1| - 0.00011 22.6 6.1 0.0014 19.0 6.5 2.0 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|257388652|ref|YP_003178425.1| - 0.0011 19.5 15.6 0.013 16.0 15.6 2.4 1 1 0 1 1 1 1 4Fe-4S single cluster domain of Ferredoxin I Fer4_4 PF12800.7 gi|257388652|ref|YP_003178425.1| - 0.0012 19.2 2.4 0.0012 19.2 2.4 2.2 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_3 PF12798.7 gi|257388652|ref|YP_003178425.1| - 0.0024 18.7 4.1 0.0024 18.7 4.1 2.3 2 0 0 2 2 2 1 4Fe-4S binding domain Fer4_18 PF13746.6 gi|257388652|ref|YP_003178425.1| - 0.003 17.7 3.6 0.003 17.7 3.6 2.1 1 1 1 2 2 2 1 4Fe-4S dicluster domain ETF_QO PF05187.13 gi|257388652|ref|YP_003178425.1| - 0.0057 16.8 0.2 0.0062 16.7 0.2 1.1 1 0 0 1 1 1 1 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Fer4_15 PF13459.6 gi|257388652|ref|YP_003178425.1| - 3.5 8.4 18.1 43 4.9 18.1 2.9 1 1 0 1 1 1 0 4Fe-4S single cluster domain ETF PF01012.21 gi|257388653|ref|YP_003178426.1| - 1.6e-39 135.6 0.1 2e-39 135.4 0.1 1.1 1 0 0 1 1 1 1 Electron transfer flavoprotein domain ETF_alpha PF00766.19 gi|257388654|ref|YP_003178427.1| - 6.6e-25 87.0 0.4 1.4e-24 85.9 0.4 1.6 1 0 0 1 1 1 1 Electron transfer flavoprotein FAD-binding domain ETF PF01012.21 gi|257388654|ref|YP_003178427.1| - 5.7e-16 58.9 0.0 2e-13 50.6 0.0 2.5 2 0 0 2 2 2 2 Electron transfer flavoprotein domain PI3K_1B_p101 PF10486.9 gi|257388654|ref|YP_003178427.1| - 0.25 9.1 0.3 0.34 8.6 0.3 1.1 1 0 0 1 1 1 0 Phosphoinositide 3-kinase gamma adapter protein p101 subunit FAD_binding_3 PF01494.19 gi|257388655|ref|YP_003178428.1| - 1.5e-10 40.8 2.6 9.8e-05 21.7 0.0 2.4 2 1 0 2 2 2 2 FAD binding domain DAO PF01266.24 gi|257388655|ref|YP_003178428.1| - 4.4e-07 29.8 4.4 0.00012 21.8 0.7 2.3 1 1 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|257388655|ref|YP_003178428.1| - 8.1e-06 25.3 4.3 0.0023 17.2 1.0 2.4 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|257388655|ref|YP_003178428.1| - 1.3e-05 24.8 0.3 1.8e-05 24.3 0.3 1.2 1 0 0 1 1 1 1 FAD dependent oxidoreductase NAD_binding_8 PF13450.6 gi|257388655|ref|YP_003178428.1| - 2.5e-05 24.4 0.5 8.5e-05 22.7 0.5 1.9 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain ETF_QO PF05187.13 gi|257388655|ref|YP_003178428.1| - 0.00052 20.1 0.6 0.001 19.2 0.6 1.4 1 0 0 1 1 1 1 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S Thi4 PF01946.17 gi|257388655|ref|YP_003178428.1| - 0.005 16.1 0.0 0.0091 15.3 0.0 1.4 1 0 0 1 1 1 1 Thi4 family HI0933_like PF03486.14 gi|257388655|ref|YP_003178428.1| - 0.0069 15.1 1.8 0.014 14.1 1.0 1.7 2 0 0 2 2 2 1 HI0933-like protein Pyr_redox_3 PF13738.6 gi|257388655|ref|YP_003178428.1| - 0.016 14.5 0.7 0.026 13.8 0.7 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|257388655|ref|YP_003178428.1| - 0.019 14.0 5.3 0.028 13.5 2.5 2.1 1 1 2 3 3 3 0 FAD binding domain GIDA PF01134.22 gi|257388655|ref|YP_003178428.1| - 2.7 7.0 4.4 1.6 7.7 2.5 1.5 2 0 0 2 2 2 0 Glucose inhibited division protein A Fer4_2 PF12797.7 gi|257388655|ref|YP_003178428.1| - 3.1 8.1 6.1 0.26 11.5 0.7 2.0 2 0 0 2 2 2 0 4Fe-4S binding domain Acetyltransf_1 PF00583.25 gi|257388657|ref|YP_003178430.1| - 1.5e-12 47.8 0.1 3e-12 46.8 0.1 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.7 gi|257388657|ref|YP_003178430.1| - 2.3e-11 44.1 0.0 3.1e-11 43.7 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|257388657|ref|YP_003178430.1| - 4.5e-07 30.2 0.0 8.3e-07 29.3 0.0 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|257388657|ref|YP_003178430.1| - 1e-05 25.5 0.0 2.3e-05 24.3 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|257388657|ref|YP_003178430.1| - 2.8e-05 24.8 0.0 5.3e-05 23.9 0.0 1.5 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|257388657|ref|YP_003178430.1| - 0.01 16.0 0.0 0.023 14.8 0.0 1.7 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase DUF456 PF04306.13 gi|257388659|ref|YP_003178432.1| - 2.3e-27 96.0 26.3 2.3e-27 96.0 26.3 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF456) DUF5453 PF17534.2 gi|257388659|ref|YP_003178432.1| - 0.15 12.0 2.3 0.31 11.0 2.3 1.6 1 0 0 1 1 1 0 Family of unknown function (DUF5453) DUF454 PF04304.13 gi|257388659|ref|YP_003178432.1| - 8.5 6.4 23.9 4.7 7.3 15.4 3.2 1 1 1 2 2 2 0 Protein of unknown function (DUF454) Helicase_RecD PF05127.14 gi|257388660|ref|YP_003178433.1| - 6e-50 169.5 0.0 1e-49 168.8 0.0 1.4 1 0 0 1 1 1 1 Helicase GNAT_acetyltr_2 PF13718.6 gi|257388660|ref|YP_003178433.1| - 2.1e-43 148.3 0.0 2.8e-26 92.3 0.0 2.2 1 1 1 2 2 2 2 GNAT acetyltransferase 2 DUF1726 PF08351.11 gi|257388660|ref|YP_003178433.1| - 7.4e-25 86.7 0.0 8e-24 83.4 0.0 2.6 3 0 0 3 3 3 1 Domain of unknown function (DUF1726) AAA_30 PF13604.6 gi|257388660|ref|YP_003178433.1| - 5.1e-08 32.9 1.0 1.2e-07 31.7 0.2 1.9 2 0 0 2 2 2 1 AAA domain Acetyltransf_10 PF13673.7 gi|257388660|ref|YP_003178433.1| - 0.00088 19.2 0.0 0.0021 18.0 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|257388660|ref|YP_003178433.1| - 0.0014 19.0 0.0 0.0083 16.5 0.0 2.3 3 0 0 3 3 3 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|257388660|ref|YP_003178433.1| - 0.12 12.6 0.0 0.28 11.4 0.0 1.6 1 0 0 1 1 1 0 Acetyltransferase (GNAT) family Ribosomal_L7Ae PF01248.26 gi|257388661|ref|YP_003178434.1| - 4.8e-26 90.3 0.0 5.6e-26 90.1 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family PELOTA_1 PF15608.6 gi|257388661|ref|YP_003178434.1| - 3.1e-05 23.8 0.0 4.8e-05 23.2 0.0 1.3 1 0 0 1 1 1 1 PELOTA RNA binding domain DUF1269 PF06897.12 gi|257388661|ref|YP_003178434.1| - 0.00025 21.3 1.9 0.077 13.3 0.1 2.1 2 0 0 2 2 2 2 Protein of unknown function (DUF1269) eRF1_3 PF03465.15 gi|257388661|ref|YP_003178434.1| - 0.055 14.0 0.1 0.064 13.7 0.1 1.2 1 0 0 1 1 1 0 eRF1 domain 3 DUF1694 PF07997.11 gi|257388661|ref|YP_003178434.1| - 0.084 13.0 0.0 0.11 12.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1694) Ribosomal_S28e PF01200.18 gi|257388662|ref|YP_003178435.1| - 1.5e-29 101.7 1.7 1.7e-29 101.6 1.7 1.0 1 0 0 1 1 1 1 Ribosomal protein S28e Ribosomal_L24e PF01246.20 gi|257388663|ref|YP_003178436.1| - 3.8e-22 78.3 0.1 5.1e-22 77.9 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L24e zf-FCS PF06467.14 gi|257388663|ref|YP_003178436.1| - 0.0056 16.6 0.6 0.0079 16.1 0.6 1.2 1 0 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif Cwf_Cwc_15 PF04889.12 gi|257388663|ref|YP_003178436.1| - 0.093 12.4 24.6 0.1 12.3 24.6 1.1 1 0 0 1 1 1 0 Cwf15/Cwc15 cell cycle control protein VATC PF18716.1 gi|257388663|ref|YP_003178436.1| - 0.39 10.6 3.6 1.3 8.9 3.6 1.8 1 1 0 1 1 1 0 Vms1-associating treble clef domain PPP4R2 PF09184.11 gi|257388663|ref|YP_003178436.1| - 3.2 7.3 25.6 4.1 6.9 25.6 1.2 1 0 0 1 1 1 0 PPP4R2 CDC27 PF09507.10 gi|257388663|ref|YP_003178436.1| - 4 6.7 23.9 4.2 6.6 23.9 1.0 1 0 0 1 1 1 0 DNA polymerase subunit Cdc27 DUF966 PF06136.13 gi|257388663|ref|YP_003178436.1| - 4.6 6.9 12.9 5 6.8 12.9 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF966) RR_TM4-6 PF06459.12 gi|257388663|ref|YP_003178436.1| - 7.1 6.4 16.4 8.9 6.0 16.4 1.3 1 0 0 1 1 1 0 Ryanodine Receptor TM 4-6 NDK PF00334.19 gi|257388664|ref|YP_003178437.1| - 4e-58 195.2 0.0 4.5e-58 195.1 0.0 1.0 1 0 0 1 1 1 1 Nucleoside diphosphate kinase GST_N_3 PF13417.6 gi|257388665|ref|YP_003178438.1| - 1.3e-14 54.4 0.0 1.5e-14 54.2 0.0 1.0 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain Glutaredoxin PF00462.24 gi|257388665|ref|YP_003178438.1| - 2.5e-13 50.0 0.0 3.2e-13 49.7 0.0 1.2 1 0 0 1 1 1 1 Glutaredoxin GST_N_2 PF13409.6 gi|257388665|ref|YP_003178438.1| - 1e-08 35.4 0.0 1.1e-08 35.2 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain GST_N PF02798.20 gi|257388665|ref|YP_003178438.1| - 0.00011 22.4 0.0 0.00014 22.1 0.0 1.1 1 0 0 1 1 1 1 Glutathione S-transferase, N-terminal domain DUF836 PF05768.14 gi|257388665|ref|YP_003178438.1| - 0.00083 19.7 0.1 0.001 19.4 0.1 1.4 1 1 0 1 1 1 1 Glutaredoxin-like domain (DUF836) DSBA PF01323.20 gi|257388665|ref|YP_003178438.1| - 0.08 12.7 0.0 0.1 12.4 0.0 1.2 1 0 0 1 1 1 0 DSBA-like thioredoxin domain NTP_transf_3 PF12804.7 gi|257388665|ref|YP_003178438.1| - 0.11 12.9 0.0 0.12 12.7 0.0 1.1 1 0 0 1 1 1 0 MobA-like NTP transferase domain Trans_coact PF16805.5 gi|257388665|ref|YP_003178438.1| - 0.18 11.9 0.1 0.36 11.0 0.1 1.4 1 0 0 1 1 1 0 Phage late-transcription coactivator SelR PF01641.18 gi|257388667|ref|YP_003178440.1| - 1.3e-51 173.7 0.0 1.6e-51 173.5 0.0 1.0 1 0 0 1 1 1 1 SelR domain Yippee-Mis18 PF03226.14 gi|257388667|ref|YP_003178440.1| - 0.0013 18.9 0.0 0.0041 17.3 0.0 1.7 1 1 0 1 1 1 1 Yippee zinc-binding/DNA-binding /Mis18, centromere assembly zinc_ribbon_10 PF10058.9 gi|257388667|ref|YP_003178440.1| - 0.005 16.5 0.1 0.28 10.9 0.0 2.2 2 0 0 2 2 2 1 Predicted integral membrane zinc-ribbon metal-binding protein HECT_2 PF09814.9 gi|257388667|ref|YP_003178440.1| - 0.064 12.1 0.1 6.2 5.6 0.1 2.0 1 1 1 2 2 2 0 HECT-like Ubiquitin-conjugating enzyme (E2)-binding TF_Zn_Ribbon PF08271.12 gi|257388667|ref|YP_003178440.1| - 0.099 12.2 4.8 2 8.0 0.1 3.2 3 0 0 3 3 3 0 TFIIB zinc-binding zf-RRN7 PF11781.8 gi|257388667|ref|YP_003178440.1| - 0.15 11.8 4.9 1.6 8.5 0.7 3.3 3 0 0 3 3 3 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 DUF87 PF01935.17 gi|257388668|ref|YP_003178441.1| - 3.5e-09 37.1 0.0 7.1e-08 32.8 0.0 2.1 1 1 0 1 1 1 1 Helicase HerA, central domain DUF853 PF05872.12 gi|257388668|ref|YP_003178441.1| - 0.0073 15.0 0.4 2.8 6.4 0.0 2.1 2 0 0 2 2 2 2 Bacterial protein of unknown function (DUF853) AAA_30 PF13604.6 gi|257388668|ref|YP_003178441.1| - 0.027 14.2 6.3 1 9.0 4.7 3.0 1 1 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|257388668|ref|YP_003178441.1| - 0.17 12.4 0.0 0.34 11.4 0.0 1.5 1 0 0 1 1 1 0 ABC transporter Helicase_RecD PF05127.14 gi|257388668|ref|YP_003178441.1| - 0.19 11.5 0.5 0.51 10.2 0.3 1.8 2 0 0 2 2 2 0 Helicase FimA PF16970.5 gi|257388669|ref|YP_003178442.1| - 0.069 13.3 0.0 0.08 13.1 0.0 1.0 1 0 0 1 1 1 0 Type-1 fimbrial protein, A Mub_B2 PF17966.1 gi|257388669|ref|YP_003178442.1| - 0.13 13.0 2.5 0.18 12.5 2.4 1.5 1 1 0 1 1 1 0 Mub B2-like domain PRC PF05239.16 gi|257388670|ref|YP_003178443.1| - 6.2e-09 35.8 0.1 7.3e-09 35.6 0.1 1.0 1 0 0 1 1 1 1 PRC-barrel domain DUF2171 PF09939.9 gi|257388670|ref|YP_003178443.1| - 0.13 12.6 2.2 0.4 11.0 2.2 1.7 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2171) Acetyltransf_1 PF00583.25 gi|257388671|ref|YP_003178444.1| - 8.6e-18 64.7 0.0 1e-17 64.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|257388671|ref|YP_003178444.1| - 3.1e-12 46.7 0.0 4.2e-12 46.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|257388671|ref|YP_003178444.1| - 8.9e-11 41.8 0.0 1.2e-10 41.4 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|257388671|ref|YP_003178444.1| - 6.1e-07 29.3 0.0 9.3e-07 28.7 0.0 1.3 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|257388671|ref|YP_003178444.1| - 7.3e-05 22.8 0.0 8.8e-05 22.6 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_13 PF13880.6 gi|257388671|ref|YP_003178444.1| - 0.00047 20.1 0.0 0.013 15.5 0.0 2.7 2 1 0 2 2 2 1 ESCO1/2 acetyl-transferase Acetyltransf_8 PF13523.6 gi|257388671|ref|YP_003178444.1| - 0.0011 18.7 0.0 0.0015 18.2 0.0 1.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|257388671|ref|YP_003178444.1| - 0.012 16.3 0.0 0.014 16.0 0.0 1.1 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain PanZ PF12568.8 gi|257388671|ref|YP_003178444.1| - 0.11 12.2 0.0 0.14 11.9 0.0 1.4 1 1 0 1 1 1 0 Acetyltransferase (GNAT) domain, PanZ Acetyltransf_CG PF14542.6 gi|257388671|ref|YP_003178444.1| - 0.12 12.5 0.1 0.29 11.3 0.1 1.7 1 1 0 1 1 1 0 GCN5-related N-acetyl-transferase Acetyltransf_4 PF13420.7 gi|257388671|ref|YP_003178444.1| - 0.13 12.4 0.0 0.17 12.0 0.0 1.1 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain CBS PF00571.28 gi|257388672|ref|YP_003178445.1| - 6.3e-19 68.2 2.0 2.7e-10 40.6 0.0 2.2 2 0 0 2 2 2 2 CBS domain DUF4831 PF16115.5 gi|257388672|ref|YP_003178445.1| - 0.021 13.9 0.2 0.066 12.3 0.0 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF4831) GCH_III PF05165.12 gi|257388673|ref|YP_003178446.1| - 5.1e-89 297.8 1.6 6.6e-89 297.4 1.6 1.0 1 0 0 1 1 1 1 GTP cyclohydrolase III GGDEF_2 PF17853.1 gi|257388673|ref|YP_003178446.1| - 2.6e-06 27.7 0.1 0.00056 20.2 0.0 2.2 2 0 0 2 2 2 2 GGDEF-like domain mCpol PF18182.1 gi|257388673|ref|YP_003178446.1| - 2.8e-05 24.4 0.0 0.013 15.8 0.0 2.2 2 0 0 2 2 2 2 minimal CRISPR polymerase domain DUF4981 PF16353.5 gi|257388675|ref|YP_003178448.1| - 0.0098 16.4 0.1 2.3 8.7 0.0 2.6 2 0 0 2 2 2 2 Domain of unknown function(DUF4981) FtsK_SpoIIIE_N PF12538.8 gi|257388675|ref|YP_003178448.1| - 0.11 12.7 0.2 0.41 10.8 0.1 2.0 2 0 0 2 2 2 0 DNA transporter DUF1573 PF07610.11 gi|257388675|ref|YP_003178448.1| - 0.18 11.8 0.8 18 5.4 0.0 3.5 3 2 0 3 3 3 0 Protein of unknown function (DUF1573) TGF_beta_GS PF08515.12 gi|257388675|ref|YP_003178448.1| - 2.6 7.6 5.3 0.3 10.6 0.3 2.2 2 0 0 2 2 2 0 Transforming growth factor beta type I GS-motif Lactonase PF10282.9 gi|257388676|ref|YP_003178449.1| - 1.9e-114 382.5 0.0 2.1e-114 382.4 0.0 1.0 1 0 0 1 1 1 1 Lactonase, 7-bladed beta-propeller SGL PF08450.12 gi|257388676|ref|YP_003178449.1| - 0.00012 21.7 3.4 0.011 15.4 0.2 3.4 2 2 2 4 4 4 1 SMP-30/Gluconolactonase/LRE-like region SBD PF17882.1 gi|257388676|ref|YP_003178449.1| - 0.04 13.7 0.1 0.36 10.7 0.0 2.3 1 1 1 2 2 2 0 OAA-family lectin sugar binding domain CBS PF00571.28 gi|257388678|ref|YP_003178451.1| - 9.8e-22 77.2 3.7 1.9e-11 44.2 0.2 2.1 2 0 0 2 2 2 2 CBS domain TmoB PF06234.12 gi|257388678|ref|YP_003178451.1| - 0.52 10.4 3.4 0.46 10.6 1.1 2.0 1 1 1 2 2 2 0 Toluene-4-monooxygenase system protein B (TmoB) UDG PF03167.19 gi|257388679|ref|YP_003178452.1| - 3.9e-23 82.2 0.0 4.6e-23 81.9 0.0 1.1 1 0 0 1 1 1 1 Uracil DNA glycosylase superfamily NqrM PF04400.13 gi|257388679|ref|YP_003178452.1| - 0.0083 15.9 0.4 0.014 15.1 0.4 1.3 1 0 0 1 1 1 1 (Na+)-NQR maturation NqrM Chorismate_synt PF01264.21 gi|257388680|ref|YP_003178453.1| - 2.1e-113 378.3 0.0 2.5e-113 378.1 0.0 1.0 1 0 0 1 1 1 1 Chorismate synthase DUF3197 PF11432.8 gi|257388680|ref|YP_003178453.1| - 0.16 11.9 0.0 0.3 11.0 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3197) EPSP_synthase PF00275.20 gi|257388681|ref|YP_003178454.1| - 5.6e-103 344.8 0.1 6.5e-103 344.6 0.1 1.0 1 0 0 1 1 1 1 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Peptidase_M24 PF00557.24 gi|257388682|ref|YP_003178455.1| - 6.1e-50 169.8 1.6 7.8e-50 169.5 1.6 1.1 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|257388682|ref|YP_003178455.1| - 5.3e-06 27.1 2.3 1.7e-05 25.5 0.5 2.3 1 1 1 2 2 2 1 Creatinase/Prolidase N-terminal domain RHH_1 PF01402.21 gi|257388684|ref|YP_003178457.1| - 0.0003 20.6 0.0 0.00043 20.1 0.0 1.2 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family DbpA PF03880.15 gi|257388684|ref|YP_003178457.1| - 0.15 12.1 0.0 0.24 11.4 0.0 1.5 1 1 0 1 1 1 0 DbpA RNA binding domain Y1_Tnp PF01797.16 gi|257388685|ref|YP_003178458.1| - 2e-37 128.0 0.0 2.3e-37 127.8 0.0 1.0 1 0 0 1 1 1 1 Transposase IS200 like OrfB_Zn_ribbon PF07282.11 gi|257388686|ref|YP_003178459.1| - 3.6e-23 81.3 0.2 6.2e-23 80.5 0.2 1.4 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Taxilin PF09728.9 gi|257388686|ref|YP_003178459.1| - 0.12 11.6 0.1 0.16 11.1 0.1 1.1 1 0 0 1 1 1 0 Myosin-like coiled-coil protein Peptidase_M32 PF02074.15 gi|257388686|ref|YP_003178459.1| - 0.18 10.6 0.1 0.18 10.6 0.1 1.3 2 0 0 2 2 2 0 Carboxypeptidase Taq (M32) metallopeptidase Glyoxalase PF00903.25 gi|257388689|ref|YP_003178462.1| - 4.2e-09 36.7 0.4 0.00012 22.3 0.1 2.8 2 1 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 gi|257388689|ref|YP_003178462.1| - 3.8e-06 27.6 4.0 0.016 16.0 0.7 2.2 2 0 0 2 2 2 2 Glyoxalase-like domain Glyoxalase_2 PF12681.7 gi|257388689|ref|YP_003178462.1| - 2e-05 24.5 0.0 0.0054 16.6 0.0 3.2 4 0 0 4 4 4 1 Glyoxalase-like domain Glyoxalase_3 PF13468.6 gi|257388689|ref|YP_003178462.1| - 0.0094 16.1 0.1 0.34 11.0 0.1 3.1 2 2 1 3 3 3 1 Glyoxalase-like domain Acetyltransf_10 PF13673.7 gi|257388689|ref|YP_003178462.1| - 0.016 15.1 0.0 0.035 14.0 0.0 1.5 1 0 0 1 1 1 0 Acetyltransferase (GNAT) domain HMGL-like PF00682.19 gi|257388691|ref|YP_003178464.1| - 5e-65 219.7 5.1 7.7e-65 219.1 5.1 1.3 1 0 0 1 1 1 1 HMGL-like AP_endonuc_2 PF01261.24 gi|257388691|ref|YP_003178464.1| - 0.072 12.5 0.3 0.67 9.4 0.1 2.4 2 0 0 2 2 2 0 Xylose isomerase-like TIM barrel TPP_enzyme_C PF02775.21 gi|257388692|ref|YP_003178465.1| - 4.3e-52 175.9 0.0 1e-51 174.8 0.0 1.7 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain TPP_enzyme_N PF02776.18 gi|257388692|ref|YP_003178465.1| - 3.7e-51 173.2 0.2 8.7e-51 171.9 0.2 1.7 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain TPP_enzyme_M PF00205.22 gi|257388692|ref|YP_003178465.1| - 6e-47 158.8 0.1 1.2e-46 157.9 0.1 1.5 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, central domain CO_dh PF02552.16 gi|257388692|ref|YP_003178465.1| - 0.17 11.6 0.0 0.3 10.8 0.0 1.3 1 0 0 1 1 1 0 CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit ALS_ss_C PF10369.9 gi|257388693|ref|YP_003178466.1| - 1.4e-21 76.5 0.1 2.2e-21 75.8 0.1 1.4 1 0 0 1 1 1 1 Small subunit of acetolactate synthase ACT PF01842.25 gi|257388693|ref|YP_003178466.1| - 3.2e-14 52.4 0.0 8.7e-14 51.0 0.0 1.8 1 1 0 1 1 1 1 ACT domain ACT_5 PF13710.6 gi|257388693|ref|YP_003178466.1| - 1.2e-12 47.5 0.0 3e-12 46.2 0.0 1.7 2 0 0 2 2 2 1 ACT domain ACT_4 PF13291.6 gi|257388693|ref|YP_003178466.1| - 0.001 19.6 0.0 0.0022 18.5 0.0 1.5 1 0 0 1 1 1 1 ACT domain NIL PF09383.10 gi|257388693|ref|YP_003178466.1| - 0.0037 17.1 0.1 0.82 9.6 0.0 2.7 2 1 0 2 2 2 2 NIL domain IlvN PF07991.12 gi|257388694|ref|YP_003178467.1| - 7e-70 233.9 0.4 9.2e-70 233.5 0.4 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain IlvC PF01450.19 gi|257388694|ref|YP_003178467.1| - 9.3e-60 201.1 0.5 1.3e-59 200.6 0.5 1.2 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, catalytic domain F420_oxidored PF03807.17 gi|257388694|ref|YP_003178467.1| - 4.2e-08 33.7 0.0 8.5e-08 32.7 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent 2-Hacid_dh_C PF02826.19 gi|257388694|ref|YP_003178467.1| - 4.3e-08 32.7 0.0 9.4e-08 31.6 0.0 1.5 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.15 gi|257388694|ref|YP_003178467.1| - 1.9e-05 24.9 0.0 3.7e-05 24.0 0.0 1.4 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase AdoHcyase_NAD PF00670.21 gi|257388694|ref|YP_003178467.1| - 0.0049 16.9 0.3 0.012 15.7 0.1 1.6 2 0 0 2 2 2 1 S-adenosyl-L-homocysteine hydrolase, NAD binding domain NAD_binding_7 PF13241.6 gi|257388694|ref|YP_003178467.1| - 0.024 15.0 0.1 0.19 12.2 0.0 2.2 2 0 0 2 2 2 0 Putative NAD(P)-binding NAD_Gly3P_dh_N PF01210.23 gi|257388694|ref|YP_003178467.1| - 0.029 14.3 0.1 2.3 8.2 0.1 2.3 1 1 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ApbA PF02558.16 gi|257388694|ref|YP_003178467.1| - 0.031 13.9 0.0 0.052 13.2 0.0 1.5 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Mur_ligase PF01225.25 gi|257388694|ref|YP_003178467.1| - 0.041 14.2 0.1 0.11 12.8 0.1 1.7 1 0 0 1 1 1 0 Mur ligase family, catalytic domain Rossmann-like PF10727.9 gi|257388694|ref|YP_003178467.1| - 0.053 13.4 0.1 0.094 12.6 0.1 1.3 1 0 0 1 1 1 0 Rossmann-like domain Oxidored_nitro PF00148.19 gi|257388694|ref|YP_003178467.1| - 0.065 11.9 0.0 0.097 11.4 0.0 1.3 1 0 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase DMP12 PF16779.5 gi|257388694|ref|YP_003178467.1| - 0.11 12.4 0.0 0.19 11.7 0.0 1.3 1 0 0 1 1 1 0 DNA-mimic protein Aconitase PF00330.20 gi|257388696|ref|YP_003178469.1| - 1.3e-146 489.3 0.0 1.4e-146 489.1 0.0 1.0 1 0 0 1 1 1 1 Aconitase family (aconitate hydratase) DUF521 PF04412.13 gi|257388696|ref|YP_003178469.1| - 0.0028 16.4 0.0 0.0058 15.4 0.0 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF521) DUF3944 PF13099.6 gi|257388696|ref|YP_003178469.1| - 0.079 12.8 0.0 0.28 11.1 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF3944) Aconitase_C PF00694.19 gi|257388697|ref|YP_003178470.1| - 7.7e-19 68.3 0.0 1.2e-18 67.8 0.0 1.3 1 0 0 1 1 1 1 Aconitase C-terminal domain Lum_binding PF00677.17 gi|257388698|ref|YP_003178471.1| - 0.43 10.6 3.6 3.3 7.7 1.0 2.4 1 1 1 2 2 2 0 Lumazine binding domain Iso_dh PF00180.20 gi|257388699|ref|YP_003178472.1| - 1.5e-92 310.4 0.1 1.7e-92 310.3 0.1 1.0 1 0 0 1 1 1 1 Isocitrate/isopropylmalate dehydrogenase DUF1824 PF08854.10 gi|257388699|ref|YP_003178472.1| - 0.2 11.5 0.0 0.32 10.9 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1824) DeoRC PF00455.22 gi|257388700|ref|YP_003178473.1| - 1.4e-51 174.6 2.1 2.2e-51 173.9 2.1 1.3 1 0 0 1 1 1 1 DeoR C terminal sensor domain HTH_DeoR PF08220.12 gi|257388700|ref|YP_003178473.1| - 4.6e-16 58.3 0.1 9e-16 57.4 0.1 1.5 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_11 PF08279.12 gi|257388700|ref|YP_003178473.1| - 2.3e-07 30.7 0.1 4.7e-07 29.7 0.1 1.5 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.6 gi|257388700|ref|YP_003178473.1| - 2.8e-05 23.6 1.4 4.6e-05 22.9 0.2 1.9 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|257388700|ref|YP_003178473.1| - 0.00016 21.5 1.5 0.00052 19.8 0.3 2.3 2 0 0 2 2 2 1 MarR family MarR PF01047.22 gi|257388700|ref|YP_003178473.1| - 0.00033 20.5 0.0 0.0015 18.4 0.0 2.0 2 0 0 2 2 2 1 MarR family GntR PF00392.21 gi|257388700|ref|YP_003178473.1| - 0.00036 20.1 0.0 0.0013 18.3 0.0 1.9 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_20 PF12840.7 gi|257388700|ref|YP_003178473.1| - 0.0012 18.9 1.5 0.0036 17.3 0.2 2.4 2 1 0 2 2 2 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|257388700|ref|YP_003178473.1| - 0.0043 16.8 0.1 0.012 15.4 0.1 1.8 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|257388700|ref|YP_003178473.1| - 0.0089 15.9 0.0 0.015 15.2 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_Mga PF08280.11 gi|257388700|ref|YP_003178473.1| - 0.011 15.8 0.0 0.017 15.1 0.0 1.3 1 0 0 1 1 1 0 M protein trans-acting positive regulator (MGA) HTH domain HTH_38 PF13936.6 gi|257388700|ref|YP_003178473.1| - 0.026 14.3 0.1 0.054 13.3 0.1 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Fe_dep_repress PF01325.19 gi|257388700|ref|YP_003178473.1| - 0.026 14.7 0.0 0.047 13.9 0.0 1.5 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain TrmB PF01978.19 gi|257388700|ref|YP_003178473.1| - 0.039 13.8 0.0 0.074 12.9 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB FaeA PF04703.12 gi|257388700|ref|YP_003178473.1| - 0.098 13.0 0.0 0.24 11.8 0.0 1.7 2 0 0 2 2 1 0 FaeA-like protein DUF3489 PF11994.8 gi|257388700|ref|YP_003178473.1| - 0.13 12.3 0.0 0.35 11.0 0.0 1.7 1 0 0 1 1 1 0 Protein of unknown function (DUF3489) RPA_C PF08784.11 gi|257388700|ref|YP_003178473.1| - 0.16 12.6 0.0 0.68 10.6 0.0 1.9 2 0 0 2 2 2 0 Replication protein A C terminal HTH_Tnp_1 PF01527.20 gi|257388700|ref|YP_003178473.1| - 0.25 11.7 1.2 0.85 10.0 0.1 2.3 3 0 0 3 3 3 0 Transposase PfkB PF00294.24 gi|257388701|ref|YP_003178474.1| - 2.6e-39 135.3 6.2 3.4e-39 134.9 6.2 1.1 1 0 0 1 1 1 1 pfkB family carbohydrate kinase Phos_pyr_kin PF08543.12 gi|257388701|ref|YP_003178474.1| - 0.00092 18.7 0.0 0.0016 17.9 0.0 1.5 1 0 0 1 1 1 1 Phosphomethylpyrimidine kinase PfkB PF00294.24 gi|257388702|ref|YP_003178475.1| - 1.7e-09 37.4 2.8 3.2e-09 36.5 2.8 1.3 1 0 0 1 1 1 1 pfkB family carbohydrate kinase DeoC PF01791.9 gi|257388703|ref|YP_003178476.1| - 1.3e-31 110.0 0.0 1.5e-31 109.8 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase AP_endonuc_2 PF01261.24 gi|257388703|ref|YP_003178476.1| - 0.04 13.3 0.0 0.075 12.5 0.0 1.6 2 0 0 2 2 2 0 Xylose isomerase-like TIM barrel FIST PF08495.10 gi|257388705|ref|YP_003178478.1| - 2.1e-36 125.5 0.5 5.7e-35 120.9 0.1 2.2 2 0 0 2 2 2 1 FIST N domain FIST_C PF10442.9 gi|257388705|ref|YP_003178478.1| - 3.6e-22 78.7 0.1 9.8e-21 74.1 0.0 2.7 3 0 0 3 3 3 1 FIST C domain OsmC PF02566.19 gi|257388706|ref|YP_003178479.1| - 3.5e-11 43.5 0.0 4.7e-11 43.0 0.0 1.2 1 0 0 1 1 1 1 OsmC-like protein Meth_synt_2 PF01717.18 gi|257388707|ref|YP_003178480.1| - 5.2e-55 187.0 0.0 1.1e-54 185.9 0.0 1.4 1 1 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.12 gi|257388707|ref|YP_003178480.1| - 5.1e-12 45.9 0.0 8.7e-12 45.2 0.0 1.3 1 0 0 1 1 1 1 Cobalamin-independent synthase, N-terminal domain URO-D PF01208.17 gi|257388707|ref|YP_003178480.1| - 9.2e-06 25.0 0.0 1.3e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 Uroporphyrinogen decarboxylase (URO-D) Methyltransf_9 PF08003.11 gi|257388707|ref|YP_003178480.1| - 0.015 14.3 0.0 0.021 13.8 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1698) Meth_synt_2 PF01717.18 gi|257388708|ref|YP_003178481.1| - 7.9e-14 51.7 0.1 1e-13 51.3 0.1 1.2 1 0 0 1 1 1 1 Cobalamin-independent synthase, Catalytic domain Meth_synt_1 PF08267.12 gi|257388708|ref|YP_003178481.1| - 5.2e-13 49.2 0.0 1.4e-12 47.8 0.0 1.6 1 1 1 2 2 2 1 Cobalamin-independent synthase, N-terminal domain GATA PF00320.27 gi|257388709|ref|YP_003178482.1| - 0.034 13.8 1.1 0.24 11.0 0.8 2.0 1 1 1 2 2 2 0 GATA zinc finger zf-RRN7 PF11781.8 gi|257388709|ref|YP_003178482.1| - 0.12 12.1 3.3 0.31 10.7 0.2 2.1 2 0 0 2 2 2 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 Zn-ribbon_8 PF09723.10 gi|257388709|ref|YP_003178482.1| - 0.13 12.4 2.7 0.24 11.5 2.7 1.5 1 1 0 1 1 1 0 Zinc ribbon domain Nudix_N_2 PF14803.6 gi|257388709|ref|YP_003178482.1| - 0.69 9.9 4.3 8.4 6.4 0.2 2.5 2 1 0 2 2 2 0 Nudix N-terminal Methyltransf_11 PF08241.12 gi|257388710|ref|YP_003178483.1| - 5.4e-10 39.8 0.3 8.2e-09 36.0 0.3 2.2 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|257388710|ref|YP_003178483.1| - 1e-07 32.5 0.0 2e-06 28.4 0.0 2.2 2 0 0 2 2 2 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|257388710|ref|YP_003178483.1| - 5.2e-07 29.6 0.0 2.3e-06 27.6 0.0 1.9 1 1 0 1 1 1 1 Methyltransferase domain MTS PF05175.14 gi|257388710|ref|YP_003178483.1| - 2.3e-06 27.3 0.0 2.7e-05 23.8 0.0 2.2 1 1 0 1 1 1 1 Methyltransferase small domain Methyltransf_12 PF08242.12 gi|257388710|ref|YP_003178483.1| - 4.2e-05 24.2 0.1 0.00069 20.3 0.1 2.2 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|257388710|ref|YP_003178483.1| - 0.00036 20.3 0.0 0.00071 19.4 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|257388710|ref|YP_003178483.1| - 0.00049 19.7 0.0 0.00071 19.2 0.0 1.2 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW UPF0146 PF03686.13 gi|257388710|ref|YP_003178483.1| - 0.0012 18.8 0.0 0.0017 18.2 0.0 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0146) TrkA_N PF02254.18 gi|257388710|ref|YP_003178483.1| - 0.0057 16.9 0.1 0.019 15.2 0.0 1.8 2 0 0 2 2 2 1 TrkA-N domain CMAS PF02353.20 gi|257388710|ref|YP_003178483.1| - 0.044 13.1 0.0 0.26 10.5 0.0 1.8 2 0 0 2 2 2 0 Mycolic acid cyclopropane synthetase PCMT PF01135.19 gi|257388710|ref|YP_003178483.1| - 0.051 13.3 0.0 0.1 12.4 0.0 1.5 2 0 0 2 2 2 0 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) Methyltransf_32 PF13679.6 gi|257388710|ref|YP_003178483.1| - 0.1 12.6 0.0 0.14 12.1 0.0 1.1 1 0 0 1 1 1 0 Methyltransferase domain Methyltransf_18 PF12847.7 gi|257388710|ref|YP_003178483.1| - 0.15 12.0 0.0 0.28 11.1 0.0 1.4 1 0 0 1 1 1 0 Methyltransferase domain Ubie_methyltran PF01209.18 gi|257388710|ref|YP_003178483.1| - 0.16 11.3 0.0 8.4 5.6 0.0 2.3 2 1 0 2 2 2 0 ubiE/COQ5 methyltransferase family N6_N4_Mtase PF01555.18 gi|257388710|ref|YP_003178483.1| - 0.18 11.5 0.0 19 4.8 0.0 2.1 2 0 0 2 2 2 0 DNA methylase TPMT PF05724.11 gi|257388710|ref|YP_003178483.1| - 0.18 11.4 0.0 0.63 9.6 0.0 1.7 2 0 0 2 2 2 0 Thiopurine S-methyltransferase (TPMT) Met_10 PF02475.16 gi|257388710|ref|YP_003178483.1| - 0.25 11.1 0.0 0.36 10.5 0.0 1.2 1 0 0 1 1 1 0 Met-10+ like-protein RrnaAD PF00398.20 gi|257388711|ref|YP_003178484.1| - 5.9e-51 173.1 0.0 7e-51 172.8 0.0 1.0 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_25 PF13649.6 gi|257388711|ref|YP_003178484.1| - 8.2e-06 26.4 0.0 1.7e-05 25.4 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|257388711|ref|YP_003178484.1| - 0.0009 19.9 0.0 0.0021 18.8 0.0 1.6 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|257388711|ref|YP_003178484.1| - 0.001 19.6 0.0 0.0022 18.6 0.0 1.5 1 0 0 1 1 1 1 Methyltransferase domain NodS PF05401.11 gi|257388711|ref|YP_003178484.1| - 0.028 14.0 0.0 0.056 13.0 0.0 1.4 1 0 0 1 1 1 0 Nodulation protein S (NodS) TrkA_N PF02254.18 gi|257388711|ref|YP_003178484.1| - 0.095 13.0 0.0 0.19 12.0 0.0 1.5 1 0 0 1 1 1 0 TrkA-N domain DUF655 PF04919.12 gi|257388712|ref|YP_003178485.1| - 3e-61 206.5 0.1 3.4e-61 206.3 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF655) HHH_3 PF12836.7 gi|257388712|ref|YP_003178485.1| - 0.00027 21.1 0.1 0.00057 20.1 0.0 1.5 1 1 0 1 1 1 1 Helix-hairpin-helix motif HHH_6 PF14579.6 gi|257388712|ref|YP_003178485.1| - 0.002 18.4 0.0 0.0036 17.5 0.0 1.5 1 1 0 1 1 1 1 Helix-hairpin-helix motif HHH PF00633.23 gi|257388712|ref|YP_003178485.1| - 0.021 14.7 0.0 0.14 12.1 0.0 2.2 2 0 0 2 2 2 0 Helix-hairpin-helix motif GxDLY PF14607.6 gi|257388712|ref|YP_003178485.1| - 0.16 11.8 0.0 0.24 11.2 0.0 1.2 1 0 0 1 1 1 0 N-terminus of Esterase_SGNH_hydro-type RNA_pol_Rpb4 PF03874.16 gi|257388713|ref|YP_003178486.1| - 2.4e-13 50.5 1.8 3e-13 50.2 1.8 1.1 1 0 0 1 1 1 1 RNA polymerase Rpb4 RPAP3_C PF13877.6 gi|257388713|ref|YP_003178486.1| - 0.00077 19.9 0.3 0.18 12.4 0.0 2.2 2 0 0 2 2 2 2 Potential Monad-binding region of RPAP3 RelB_N PF18506.1 gi|257388713|ref|YP_003178486.1| - 0.015 15.1 1.4 4.1 7.3 0.1 2.7 2 0 0 2 2 2 0 RelB Antitoxin alpha helical domain FliG_N PF14842.6 gi|257388713|ref|YP_003178486.1| - 0.046 14.3 0.3 0.63 10.6 0.0 2.5 2 1 0 2 2 2 0 FliG N-terminal domain Gluconate_2-dh3 PF13618.6 gi|257388713|ref|YP_003178486.1| - 0.24 11.7 2.0 1.1 9.5 0.2 2.4 1 1 2 3 3 3 0 Gluconate 2-dehydrogenase subunit 3 Glycos_trans_3N PF02885.17 gi|257388713|ref|YP_003178486.1| - 0.32 10.9 2.6 7.7 6.4 0.1 2.7 2 1 1 3 3 3 0 Glycosyl transferase family, helical bundle domain Ribosomal_L21e PF01157.18 gi|257388714|ref|YP_003178487.1| - 4.7e-32 109.9 0.0 5.1e-32 109.7 0.0 1.0 1 0 0 1 1 1 1 Ribosomal protein L21e Phage_sheath_1N PF17481.2 gi|257388714|ref|YP_003178487.1| - 0.067 13.7 0.2 1.4 9.5 0.2 2.0 1 1 0 1 1 1 0 Phage tail sheath protein beta-sandwich domain EF1_GNE PF00736.19 gi|257388715|ref|YP_003178488.1| - 3.1e-19 69.0 0.0 3.4e-19 68.8 0.0 1.0 1 0 0 1 1 1 1 EF-1 guanine nucleotide exchange domain DUF3073 PF11273.8 gi|257388715|ref|YP_003178488.1| - 0.076 13.8 0.0 0.082 13.7 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3073) DUF1610 PF07754.11 gi|257388716|ref|YP_003178489.1| - 6.1e-07 29.3 3.9 6.1e-07 29.3 3.9 2.4 3 0 0 3 3 2 1 Domain of unknown function (DUF1610) zf-Mss51 PF13824.6 gi|257388716|ref|YP_003178489.1| - 0.0013 18.8 11.9 0.75 9.9 2.1 3.0 1 1 1 2 2 2 2 Zinc-finger of mitochondrial splicing suppressor 51 C1_2 PF03107.16 gi|257388716|ref|YP_003178489.1| - 0.0018 18.6 11.2 0.1 12.9 3.7 2.1 1 1 1 2 2 2 2 C1 domain zf-CHY PF05495.12 gi|257388716|ref|YP_003178489.1| - 0.0057 17.1 12.6 0.11 13.0 6.0 2.1 1 1 1 2 2 2 2 CHY zinc finger DNA_RNApol_7kD PF03604.13 gi|257388716|ref|YP_003178489.1| - 0.0066 16.1 12.5 0.38 10.5 1.6 3.2 2 2 0 2 2 2 2 DNA directed RNA polymerase, 7 kDa subunit OrfB_Zn_ribbon PF07282.11 gi|257388716|ref|YP_003178489.1| - 0.0068 16.3 12.2 0.04 13.8 6.1 2.1 1 1 1 2 2 2 1 Putative transposase DNA-binding domain zf-ACC PF17848.1 gi|257388716|ref|YP_003178489.1| - 0.0083 16.2 11.3 0.01 15.9 0.4 3.4 3 1 0 3 3 3 1 Acetyl-coA carboxylase zinc finger domain C1_1 PF00130.22 gi|257388716|ref|YP_003178489.1| - 0.0093 15.8 1.6 0.0093 15.8 1.6 2.3 1 1 1 2 2 2 1 Phorbol esters/diacylglycerol binding domain (C1 domain) Rhodanese_C PF12368.8 gi|257388716|ref|YP_003178489.1| - 0.0099 16.2 9.5 0.011 16.1 9.5 1.1 1 0 0 1 1 1 1 Rhodanase C-terminal Zn_Tnp_IS91 PF14319.6 gi|257388716|ref|YP_003178489.1| - 0.014 15.5 10.5 0.025 14.6 10.5 1.4 1 1 0 1 1 1 0 Transposase zinc-binding domain NMDAR2_C PF10565.9 gi|257388716|ref|YP_003178489.1| - 0.016 14.2 6.4 0.017 14.0 6.4 1.0 1 0 0 1 1 1 0 N-methyl D-aspartate receptor 2B3 C-terminus zf-HIT PF04438.16 gi|257388716|ref|YP_003178489.1| - 0.032 14.1 14.1 0.29 11.0 3.7 2.8 1 1 1 2 2 2 0 HIT zinc finger HypA PF01155.19 gi|257388716|ref|YP_003178489.1| - 0.054 13.5 1.7 0.054 13.5 1.7 2.0 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HscB_4_cys PF18256.1 gi|257388716|ref|YP_003178489.1| - 0.061 13.1 1.2 0.061 13.1 1.2 2.8 1 1 1 2 2 2 0 Co-chaperone HscB tetracysteine metal binding motif zinc-ribbons_6 PF07191.12 gi|257388716|ref|YP_003178489.1| - 0.079 13.0 12.4 4.1 7.5 13.2 2.1 1 1 0 1 1 1 0 zinc-ribbons zf_UBZ PF18439.1 gi|257388716|ref|YP_003178489.1| - 0.11 12.1 13.4 0.41 10.3 0.5 3.9 3 1 1 4 4 4 0 Ubiquitin-Binding Zinc Finger Ribosomal_L32p PF01783.23 gi|257388716|ref|YP_003178489.1| - 0.3 11.4 4.3 18 5.7 4.3 2.5 1 1 0 1 1 1 0 Ribosomal L32p protein family zf-UBR PF02207.20 gi|257388716|ref|YP_003178489.1| - 0.32 11.2 12.6 1.5 9.0 7.3 2.6 1 1 1 2 2 2 0 Putative zinc finger in N-recognin (UBR box) zf-ribbon_3 PF13248.6 gi|257388716|ref|YP_003178489.1| - 0.53 9.8 17.5 1.2 8.6 5.3 3.6 2 2 0 2 2 2 0 zinc-ribbon domain UPF0547 PF10571.9 gi|257388716|ref|YP_003178489.1| - 0.62 10.2 15.2 1.2 9.3 0.2 3.6 4 0 0 4 4 4 0 Uncharacterised protein family UPF0547 Zn_ribbon_SprT PF17283.2 gi|257388716|ref|YP_003178489.1| - 0.69 9.9 17.1 9.7 6.2 0.1 4.0 3 1 1 4 4 4 0 SprT-like zinc ribbon domain PolC_DP2 PF03833.13 gi|257388716|ref|YP_003178489.1| - 0.74 7.6 8.1 0.76 7.6 8.1 1.0 1 0 0 1 1 1 0 DNA polymerase II large subunit DP2 FYVE_2 PF02318.16 gi|257388716|ref|YP_003178489.1| - 0.75 10.0 7.3 0.92 9.7 7.3 1.1 1 0 0 1 1 1 0 FYVE-type zinc finger zf-C2HC5 PF06221.13 gi|257388716|ref|YP_003178489.1| - 0.84 9.7 11.2 0.27 11.2 3.8 2.1 1 1 1 2 2 2 0 Putative zinc finger motif, C2HC5-type zf-H2C2_2 PF13465.6 gi|257388716|ref|YP_003178489.1| - 1 9.9 14.4 3.1 8.4 0.7 3.8 2 1 2 4 4 4 0 Zinc-finger double domain Ribosomal_L37ae PF01780.19 gi|257388716|ref|YP_003178489.1| - 1.2 9.3 10.5 3.8 7.6 2.6 2.9 1 1 1 2 2 2 0 Ribosomal L37ae protein family NMD3 PF04981.13 gi|257388716|ref|YP_003178489.1| - 1.3 8.4 9.2 1.6 8.1 9.2 1.1 1 0 0 1 1 1 0 NMD3 family zf-C2H2 PF00096.26 gi|257388716|ref|YP_003178489.1| - 1.7 9.3 17.7 4.9 7.8 0.6 3.9 4 0 0 4 4 4 0 Zinc finger, C2H2 type Zn-ribbon_8 PF09723.10 gi|257388716|ref|YP_003178489.1| - 1.9 8.7 19.4 13 6.0 4.8 3.8 1 1 2 3 3 3 0 Zinc ribbon domain zf-C2H2_11 PF16622.5 gi|257388716|ref|YP_003178489.1| - 2 8.2 11.8 3.3 7.5 0.2 3.7 3 1 1 4 4 4 0 zinc-finger C2H2-type zinc_ribbon_2 PF13240.6 gi|257388716|ref|YP_003178489.1| - 2.4 8.0 17.0 1.8 8.4 4.0 3.7 2 2 0 2 2 2 0 zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|257388716|ref|YP_003178489.1| - 3.7 7.3 18.4 3.2 7.6 0.2 4.0 3 1 0 3 3 3 0 Rubredoxin metal binding domain TFIIS_C PF01096.18 gi|257388716|ref|YP_003178489.1| - 5.7 6.9 16.6 9.9 6.1 0.2 4.0 2 1 2 4 4 4 0 Transcription factor S-II (TFIIS) Sgf11 PF08209.11 gi|257388716|ref|YP_003178489.1| - 6 6.5 15.3 0.47 10.1 0.6 3.5 1 1 3 4 4 4 0 Sgf11 (transcriptional regulation protein) zf-AN1 PF01428.16 gi|257388716|ref|YP_003178489.1| - 6.2 7.1 14.2 16 5.7 2.9 3.0 1 1 0 2 2 2 0 AN1-like Zinc finger zf-CSL PF05207.13 gi|257388716|ref|YP_003178489.1| - 7.3 6.4 11.3 1.9 8.3 5.5 2.0 1 1 1 2 2 2 0 CSL zinc finger DUF2391 PF09622.10 gi|257388717|ref|YP_003178490.1| - 1.1e-05 24.9 4.2 1.5e-05 24.5 4.2 1.1 1 0 0 1 1 1 1 Putative integral membrane protein (DUF2391) PduV-EutP PF10662.9 gi|257388717|ref|YP_003178490.1| - 0.22 11.3 0.0 0.37 10.5 0.0 1.3 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation 3HCDH PF00725.22 gi|257388718|ref|YP_003178491.1| - 6.6e-24 84.4 0.0 1.5e-23 83.2 0.0 1.6 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 3HCDH_N PF02737.18 gi|257388718|ref|YP_003178491.1| - 8.7e-19 68.1 0.2 1e-17 64.6 0.2 2.1 1 1 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Phage_TTP_11 PF16460.5 gi|257388718|ref|YP_003178491.1| - 0.036 13.9 0.0 0.066 13.1 0.0 1.4 1 0 0 1 1 1 0 Phage tail tube, TTP, lambda-like TFIIB PF00382.19 gi|257388719|ref|YP_003178492.1| - 3.1e-47 158.5 1.4 4.9e-25 87.4 0.2 2.3 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|257388719|ref|YP_003178492.1| - 1.8e-15 56.2 2.4 3.2e-15 55.4 2.4 1.4 1 0 0 1 1 1 1 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.11 gi|257388719|ref|YP_003178492.1| - 0.028 14.3 2.0 0.043 13.8 0.8 1.9 2 0 0 2 2 2 0 Putative transposase DNA-binding domain Cyclin_N PF00134.23 gi|257388719|ref|YP_003178492.1| - 0.033 14.0 0.0 0.066 13.0 0.0 1.6 1 0 0 1 1 1 0 Cyclin, N-terminal domain Sigma70_r4 PF04545.16 gi|257388719|ref|YP_003178492.1| - 0.039 13.5 0.9 0.36 10.4 0.1 3.1 3 1 0 3 3 3 0 Sigma-70, region 4 Cyclin_C PF02984.19 gi|257388719|ref|YP_003178492.1| - 0.054 13.6 0.0 0.87 9.7 0.0 2.2 1 1 0 2 2 2 0 Cyclin, C-terminal domain Zn-ribbon_8 PF09723.10 gi|257388719|ref|YP_003178492.1| - 0.32 11.2 2.3 3.5 7.8 0.7 2.5 2 0 0 2 2 2 0 Zinc ribbon domain zf-ribbon_3 PF13248.6 gi|257388719|ref|YP_003178492.1| - 0.57 9.7 2.8 2.6 7.6 2.8 2.0 1 1 0 1 1 1 0 zinc-ribbon domain Bac_rhodopsin PF01036.18 gi|257388720|ref|YP_003178493.1| - 6.2e-56 189.5 20.5 7.6e-56 189.2 20.5 1.0 1 0 0 1 1 1 1 Bacteriorhodopsin-like protein MCPsignal PF00015.21 gi|257388721|ref|YP_003178494.1| - 2e-41 141.6 25.9 2e-41 141.6 25.9 5.4 3 2 2 5 5 5 2 Methyl-accepting chemotaxis protein (MCP) signalling domain dCache_1 PF02743.18 gi|257388721|ref|YP_003178494.1| - 1.8e-12 47.6 0.1 1.8e-12 47.6 0.1 4.0 2 1 0 3 3 2 1 Cache domain HAMP PF00672.25 gi|257388721|ref|YP_003178494.1| - 3.8e-12 46.4 18.6 1.6e-11 44.4 0.5 5.5 6 1 0 6 6 4 2 HAMP domain DUF948 PF06103.11 gi|257388721|ref|YP_003178494.1| - 3e-05 24.2 45.7 0.039 14.2 1.7 7.4 4 2 3 7 7 7 2 Bacterial protein of unknown function (DUF948) DUF1664 PF07889.12 gi|257388721|ref|YP_003178494.1| - 4.8e-05 23.4 35.7 0.19 11.7 2.0 6.1 3 2 2 5 5 5 3 Protein of unknown function (DUF1664) Prominin PF05478.11 gi|257388721|ref|YP_003178494.1| - 0.00012 20.2 5.8 0.00012 20.2 5.8 2.9 1 1 0 2 2 2 1 Prominin HMMR_N PF15905.5 gi|257388721|ref|YP_003178494.1| - 0.00079 19.0 3.4 0.00079 19.0 3.4 4.0 2 1 2 4 4 4 1 Hyaluronan mediated motility receptor N-terminal Alanine_zipper PF11839.8 gi|257388721|ref|YP_003178494.1| - 0.0063 16.9 8.0 0.0063 16.9 8.0 6.5 5 2 1 6 6 5 1 Alanine-zipper, major outer membrane lipoprotein Htr2 PF17909.1 gi|257388721|ref|YP_003178494.1| - 0.059 13.7 0.5 0.059 13.7 0.5 3.4 4 0 0 4 4 2 0 Htr2 transmembrane domain MbtH PF03621.13 gi|257388721|ref|YP_003178494.1| - 0.067 12.6 0.0 0.17 11.3 0.0 1.6 1 0 0 1 1 1 0 MbtH-like protein Laminin_II PF06009.12 gi|257388721|ref|YP_003178494.1| - 0.12 12.4 47.2 1.2 9.2 5.0 6.0 4 2 2 6 6 6 0 Laminin Domain II YojJ PF10372.9 gi|257388721|ref|YP_003178494.1| - 0.16 12.1 4.1 2.1 8.5 0.1 3.9 3 1 1 4 4 4 0 Bacterial membrane-spanning protein N-terminus Syntaxin_2 PF14523.6 gi|257388721|ref|YP_003178494.1| - 0.22 11.9 22.7 2.9 8.3 0.4 6.2 2 1 4 6 6 5 0 Syntaxin-like protein MAD PF05557.13 gi|257388721|ref|YP_003178494.1| - 0.23 9.8 37.6 0.11 10.8 8.5 2.3 2 0 0 2 2 2 0 Mitotic checkpoint protein BLOC1_2 PF10046.9 gi|257388721|ref|YP_003178494.1| - 0.73 10.2 39.9 0.93 9.8 1.8 6.7 2 2 4 6 6 6 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Fez1 PF06818.15 gi|257388721|ref|YP_003178494.1| - 1.4 9.3 34.3 1.3 9.5 3.3 3.6 3 0 0 3 3 3 0 Fez1 IFT57 PF10498.9 gi|257388721|ref|YP_003178494.1| - 2 7.3 35.3 1.9 7.4 3.6 3.7 1 1 1 3 3 3 0 Intra-flagellar transport protein 57 Mod_r PF07200.13 gi|257388721|ref|YP_003178494.1| - 2.2 8.4 37.6 0.4 10.8 6.9 4.7 1 1 4 5 5 5 0 Modifier of rudimentary (Mod(r)) protein Spc7 PF08317.11 gi|257388721|ref|YP_003178494.1| - 2.3 7.0 48.2 1.5 7.7 11.6 3.6 2 1 0 3 3 3 0 Spc7 kinetochore protein TPR_MLP1_2 PF07926.12 gi|257388721|ref|YP_003178494.1| - 3.4 7.7 56.0 0.045 13.8 6.1 4.9 2 1 3 5 5 5 0 TPR/MLP1/MLP2-like protein Hrs_helical PF12210.8 gi|257388721|ref|YP_003178494.1| - 4 8.0 17.2 0.22 12.1 0.8 4.6 5 1 0 5 5 4 0 Hepatocyte growth factor-regulated tyrosine kinase substrate Syntaxin-6_N PF09177.11 gi|257388721|ref|YP_003178494.1| - 4.6 7.9 35.9 15 6.2 2.2 5.9 2 2 1 4 4 4 0 Syntaxin 6, N-terminal LOH1CR12 PF10158.9 gi|257388721|ref|YP_003178494.1| - 4.8 7.2 14.6 18 5.3 0.5 4.4 2 2 3 5 5 5 0 Tumour suppressor protein Sec34 PF04136.15 gi|257388721|ref|YP_003178494.1| - 4.9 7.0 25.8 0.83 9.5 1.0 5.1 3 2 2 5 5 5 0 Sec34-like family PspB PF06667.12 gi|257388721|ref|YP_003178494.1| - 8.5 6.5 7.6 6.6 6.9 0.1 4.0 3 1 0 3 3 3 0 Phage shock protein B adh_short_C2 PF13561.6 gi|257388722|ref|YP_003178495.1| - 8.2e-39 133.5 0.0 1.7e-38 132.5 0.0 1.4 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|257388722|ref|YP_003178495.1| - 1.2e-36 126.0 0.0 1.4e-36 125.8 0.0 1.0 1 0 0 1 1 1 1 short chain dehydrogenase Epimerase PF01370.21 gi|257388722|ref|YP_003178495.1| - 4.2e-05 23.1 0.1 0.0001 21.8 0.1 1.8 2 1 0 2 2 2 1 NAD dependent epimerase/dehydratase family KR PF08659.10 gi|257388722|ref|YP_003178495.1| - 6.1e-05 23.0 0.1 9.3e-05 22.4 0.1 1.3 1 0 0 1 1 1 1 KR domain AhpC-TSA PF00578.21 gi|257388723|ref|YP_003178496.1| - 1.1e-32 112.6 0.0 1.3e-32 112.4 0.0 1.0 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|257388723|ref|YP_003178496.1| - 1.4e-25 89.7 0.0 1.7e-25 89.5 0.0 1.0 1 0 0 1 1 1 1 Redoxin AhpC-TSA_2 PF13911.6 gi|257388723|ref|YP_003178496.1| - 4.1e-05 23.7 0.0 0.00025 21.2 0.0 1.9 1 1 1 2 2 2 1 AhpC/TSA antioxidant enzyme DUF899 PF05988.12 gi|257388723|ref|YP_003178496.1| - 0.019 14.5 0.0 0.025 14.1 0.0 1.1 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF899) MttA_Hcf106 PF02416.16 gi|257388724|ref|YP_003178497.1| - 1.4e-14 53.1 1.1 1.8e-14 52.8 1.1 1.3 1 1 0 1 1 1 1 mttA/Hcf106 family Copper-bind PF00127.20 gi|257388725|ref|YP_003178498.1| - 1.5e-19 70.3 0.0 3.5e-09 37.0 0.0 3.0 2 2 0 2 2 2 2 Copper binding proteins, plastocyanin/azurin family Pheromone PF08015.11 gi|257388725|ref|YP_003178498.1| - 0.027 15.5 0.5 0.067 14.2 0.5 1.7 1 0 0 1 1 1 0 Fungal mating-type pheromone CBM_11 PF03425.13 gi|257388725|ref|YP_003178498.1| - 0.069 13.0 0.0 0.11 12.4 0.0 1.2 1 0 0 1 1 1 0 Carbohydrate binding domain (family 11) Cupredoxin_1 PF13473.6 gi|257388725|ref|YP_003178498.1| - 0.19 11.9 0.0 1.1 9.4 0.0 2.0 2 0 0 2 2 2 0 Cupredoxin-like domain HTH_20 PF12840.7 gi|257388726|ref|YP_003178499.1| - 4.3e-11 42.7 0.3 6e-11 42.3 0.3 1.2 1 0 0 1 1 1 1 Helix-turn-helix domain TrmB PF01978.19 gi|257388726|ref|YP_003178499.1| - 0.0044 16.9 0.0 0.006 16.4 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|257388726|ref|YP_003178499.1| - 0.0055 16.5 0.1 0.0088 15.8 0.1 1.3 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|257388726|ref|YP_003178499.1| - 0.013 15.3 0.1 0.02 14.8 0.1 1.3 1 0 0 1 1 1 0 MarR family HTH_7 PF02796.15 gi|257388726|ref|YP_003178499.1| - 0.099 12.7 0.0 0.16 12.1 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain of resolvase Copper-bind PF00127.20 gi|257388728|ref|YP_003178501.1| - 1.6e-14 54.2 1.4 3.5e-14 53.0 0.1 2.1 2 1 0 2 2 2 1 Copper binding proteins, plastocyanin/azurin family TAT_signal PF10518.9 gi|257388728|ref|YP_003178501.1| - 1.1e-05 25.1 3.1 2.1e-05 24.2 3.1 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Cupredoxin_1 PF13473.6 gi|257388728|ref|YP_003178501.1| - 0.0011 19.0 0.1 0.0021 18.1 0.1 1.4 1 1 0 1 1 1 1 Cupredoxin-like domain DPRP PF04244.13 gi|257388729|ref|YP_003178502.1| - 7.8e-58 196.0 0.0 1.2e-57 195.3 0.0 1.3 1 0 0 1 1 1 1 Deoxyribodipyrimidine photo-lyase-related protein FAD_binding_7 PF03441.14 gi|257388729|ref|YP_003178502.1| - 2.2e-05 24.0 0.2 3.4e-05 23.4 0.2 1.3 1 0 0 1 1 1 1 FAD binding domain of DNA photolyase ABC1 PF03109.16 gi|257388730|ref|YP_003178503.1| - 8.5e-26 90.5 0.0 3.2e-25 88.6 0.0 1.8 2 0 0 2 2 2 1 ABC1 family APH PF01636.23 gi|257388730|ref|YP_003178503.1| - 0.0091 15.9 0.0 0.031 14.2 0.0 2.0 1 1 0 1 1 1 1 Phosphotransferase enzyme family Pkinase PF00069.25 gi|257388730|ref|YP_003178503.1| - 0.068 12.5 0.0 0.14 11.5 0.0 1.4 2 0 0 2 2 2 0 Protein kinase domain TrkA_N PF02254.18 gi|257388731|ref|YP_003178504.1| - 5.2e-31 107.3 11.4 3.1e-16 59.7 0.5 2.7 2 1 0 2 2 2 2 TrkA-N domain TrkA_C PF02080.21 gi|257388731|ref|YP_003178504.1| - 2e-21 75.6 6.0 2.5e-11 43.3 0.0 5.1 6 0 0 6 6 6 2 TrkA-C domain KH_1 PF00013.29 gi|257388731|ref|YP_003178504.1| - 0.0012 18.6 0.2 0.94 9.4 0.0 3.3 2 1 0 2 2 2 2 KH domain HTH_13 PF11972.8 gi|257388731|ref|YP_003178504.1| - 0.016 15.2 0.7 0.16 12.1 0.0 2.8 3 0 0 3 3 3 0 HTH DNA binding domain Ion_trans_2 PF07885.16 gi|257388731|ref|YP_003178504.1| - 0.075 13.0 8.4 0.14 12.1 8.4 1.5 1 0 0 1 1 1 0 Ion channel E1-E2_ATPase PF00122.20 gi|257388732|ref|YP_003178505.1| - 3.9e-49 166.6 1.0 1e-48 165.3 1.0 1.8 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.26 gi|257388732|ref|YP_003178505.1| - 3.8e-45 154.8 4.9 3.8e-45 154.8 4.9 1.8 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|257388732|ref|YP_003178505.1| - 5.4e-28 97.2 0.1 1.7e-15 57.2 0.0 2.9 2 0 0 2 2 2 2 Heavy-metal-associated domain Hydrolase_3 PF08282.12 gi|257388732|ref|YP_003178505.1| - 2.6e-05 24.1 1.9 0.0012 18.6 1.3 2.5 3 0 0 3 3 3 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|257388732|ref|YP_003178505.1| - 9.4e-05 22.9 1.6 0.00029 21.3 0.8 2.3 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase Hydrolase_6 PF13344.6 gi|257388732|ref|YP_003178505.1| - 0.04 14.0 0.1 0.51 10.5 0.0 2.9 4 0 0 4 4 4 0 Haloacid dehalogenase-like hydrolase UPRTase PF14681.6 gi|257388732|ref|YP_003178505.1| - 0.098 12.1 0.1 11 5.4 0.0 2.3 2 0 0 2 2 2 0 Uracil phosphoribosyltransferase HTH_AsnC-type PF13404.6 gi|257388733|ref|YP_003178506.1| - 5.8e-16 58.0 1.7 5.8e-16 58.0 1.7 2.2 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain HTH_24 PF13412.6 gi|257388733|ref|YP_003178506.1| - 1.9e-13 49.7 0.2 3.7e-13 48.8 0.2 1.5 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|257388733|ref|YP_003178506.1| - 5.5e-06 26.2 3.3 1.2e-05 25.1 0.5 2.6 3 0 0 3 3 3 1 MarR family HTH_20 PF12840.7 gi|257388733|ref|YP_003178506.1| - 1.7e-05 24.8 0.6 4.2e-05 23.5 0.2 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain YHS PF04945.13 gi|257388733|ref|YP_003178506.1| - 9.2e-05 22.5 1.1 0.00014 21.8 1.1 1.3 1 0 0 1 1 1 1 YHS domain Sigma70_r4 PF04545.16 gi|257388733|ref|YP_003178506.1| - 0.00039 19.9 0.1 0.00073 19.0 0.1 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_27 PF13463.6 gi|257388733|ref|YP_003178506.1| - 0.0011 19.4 0.5 0.01 16.3 0.1 2.2 2 0 0 2 2 2 1 Winged helix DNA-binding domain Arc_trans_TRASH PF08394.10 gi|257388733|ref|YP_003178506.1| - 0.003 17.9 3.9 0.0048 17.2 3.9 1.4 1 0 0 1 1 1 1 Archaeal TRASH domain HTH_IclR PF09339.10 gi|257388733|ref|YP_003178506.1| - 0.0065 16.2 0.1 0.016 15.0 0.1 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain MarR PF01047.22 gi|257388733|ref|YP_003178506.1| - 0.007 16.3 0.0 0.013 15.4 0.0 1.4 1 0 0 1 1 1 1 MarR family Ta0938 PF11494.8 gi|257388733|ref|YP_003178506.1| - 0.0087 16.3 0.3 0.014 15.7 0.3 1.3 1 0 0 1 1 1 1 Ta0938 HTH_5 PF01022.20 gi|257388733|ref|YP_003178506.1| - 0.016 15.1 0.0 0.026 14.4 0.0 1.4 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family ATPase-cat_bd PF12156.8 gi|257388733|ref|YP_003178506.1| - 0.02 15.6 1.8 0.035 14.8 1.8 1.4 1 0 0 1 1 1 0 Putative metal-binding domain of cation transport ATPase TrmB PF01978.19 gi|257388733|ref|YP_003178506.1| - 0.088 12.7 0.0 0.17 11.8 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|257388733|ref|YP_003178506.1| - 0.14 12.1 0.0 0.22 11.5 0.0 1.3 1 0 0 1 1 1 0 HTH domain LexA_DNA_bind PF01726.16 gi|257388733|ref|YP_003178506.1| - 0.19 11.5 0.0 0.56 10.0 0.0 1.8 1 1 0 1 1 1 0 LexA DNA binding domain Fe_dep_repr_C PF02742.15 gi|257388734|ref|YP_003178507.1| - 8.1e-31 105.9 0.8 1.7e-30 104.9 0.8 1.6 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.19 gi|257388734|ref|YP_003178507.1| - 1.8e-19 69.7 0.1 9.2e-19 67.4 0.1 2.1 2 0 0 2 2 2 1 Iron dependent repressor, N-terminal DNA binding domain FeoA PF04023.14 gi|257388734|ref|YP_003178507.1| - 1.7e-15 57.0 1.8 3e-14 53.0 0.6 2.6 2 1 0 3 3 3 1 FeoA domain MarR PF01047.22 gi|257388734|ref|YP_003178507.1| - 3.5e-08 33.2 0.0 6.8e-08 32.3 0.0 1.5 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|257388734|ref|YP_003178507.1| - 1.2e-06 28.3 0.0 3.5e-06 26.8 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.7 gi|257388734|ref|YP_003178507.1| - 5.2e-06 26.4 0.0 1.7e-05 24.8 0.0 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain Rrf2 PF02082.20 gi|257388734|ref|YP_003178507.1| - 1.4e-05 25.3 0.0 3.3e-05 24.2 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator HTH_IclR PF09339.10 gi|257388734|ref|YP_003178507.1| - 3.4e-05 23.6 0.4 8.7e-05 22.2 0.0 1.9 2 1 1 3 3 3 1 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|257388734|ref|YP_003178507.1| - 0.00039 20.2 0.0 0.00098 18.9 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family TrmB PF01978.19 gi|257388734|ref|YP_003178507.1| - 0.0015 18.4 0.0 0.003 17.4 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_Crp_2 PF13545.6 gi|257388734|ref|YP_003178507.1| - 0.0016 18.3 0.0 0.0068 16.4 0.0 2.0 2 0 0 2 2 2 1 Crp-like helix-turn-helix domain HTH_24 PF13412.6 gi|257388734|ref|YP_003178507.1| - 0.0041 16.6 0.0 0.0067 16.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Put_DNA-bind_N PF06971.13 gi|257388734|ref|YP_003178507.1| - 0.02 14.9 0.0 0.054 13.5 0.0 1.7 1 0 0 1 1 1 0 Putative DNA-binding protein N-terminus Topoisom_bac PF01131.20 gi|257388734|ref|YP_003178507.1| - 0.021 13.8 0.0 0.03 13.3 0.0 1.1 1 0 0 1 1 1 0 DNA topoisomerase GntR PF00392.21 gi|257388734|ref|YP_003178507.1| - 0.027 14.1 0.1 0.11 12.1 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family HTH_27 PF13463.6 gi|257388734|ref|YP_003178507.1| - 0.034 14.6 0.0 0.1 13.1 0.0 1.8 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_11 PF08279.12 gi|257388734|ref|YP_003178507.1| - 0.063 13.2 0.0 0.12 12.3 0.0 1.4 1 0 0 1 1 1 0 HTH domain DUF4423 PF14394.6 gi|257388734|ref|YP_003178507.1| - 0.073 12.8 0.0 0.11 12.1 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) FtsK_gamma PF09397.10 gi|257388734|ref|YP_003178507.1| - 0.11 12.4 0.0 0.18 11.6 0.0 1.4 1 0 0 1 1 1 0 Ftsk gamma domain HrcA_DNA-bdg PF03444.15 gi|257388734|ref|YP_003178507.1| - 0.13 11.9 0.0 0.22 11.2 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding FixS PF03597.15 gi|257388735|ref|YP_003178508.1| - 0.017 14.8 1.0 0.034 13.8 1.0 1.5 1 0 0 1 1 1 0 Cytochrome oxidase maturation protein cbb3-type UPF0767 PF15990.5 gi|257388735|ref|YP_003178508.1| - 0.13 12.4 0.0 0.13 12.4 0.0 1.1 1 0 0 1 1 1 0 UPF0767 family MTH865 PF07747.11 gi|257388736|ref|YP_003178509.1| - 1.7e-29 101.3 0.2 2.3e-29 100.9 0.2 1.2 1 0 0 1 1 1 1 MTH865-like family DJ-1_PfpI PF01965.24 gi|257388737|ref|YP_003178510.1| - 1.3e-51 174.7 0.0 1.6e-51 174.4 0.0 1.1 1 0 0 1 1 1 1 DJ-1/PfpI family GATase PF00117.28 gi|257388737|ref|YP_003178510.1| - 0.00071 19.4 0.0 0.0013 18.6 0.0 1.5 1 1 0 1 1 1 1 Glutamine amidotransferase class-I ThiJ_like PF17124.5 gi|257388737|ref|YP_003178510.1| - 0.11 12.2 0.0 0.97 9.1 0.0 2.0 1 1 1 2 2 2 0 ThiJ/PfpI family-like GATase_5 PF13507.6 gi|257388737|ref|YP_003178510.1| - 0.12 11.5 0.0 0.17 11.0 0.0 1.3 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain Catalase_C PF18011.1 gi|257388737|ref|YP_003178510.1| - 0.18 11.4 0.0 0.36 10.5 0.0 1.5 1 1 0 1 1 1 0 C-terminal domain found in long catalases GATase_3 PF07685.14 gi|257388737|ref|YP_003178510.1| - 0.2 11.2 0.0 0.28 10.8 0.0 1.3 1 0 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain Hydrolase_like PF13242.6 gi|257388738|ref|YP_003178511.1| - 1.3e-22 79.6 0.1 3.2e-22 78.4 0.1 1.7 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase_6 PF13344.6 gi|257388738|ref|YP_003178511.1| - 2.1e-22 79.1 0.0 2.2e-20 72.6 0.0 2.3 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase Hydrolase PF00702.26 gi|257388738|ref|YP_003178511.1| - 9.4e-13 48.9 0.1 1.3e-12 48.5 0.1 1.1 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD_2 PF13419.6 gi|257388738|ref|YP_003178511.1| - 3.7e-06 27.2 0.0 1.7e-05 25.0 0.0 1.9 2 0 0 2 2 2 1 Haloacid dehalogenase-like hydrolase PGP_phosphatase PF09419.10 gi|257388738|ref|YP_003178511.1| - 0.006 16.2 0.0 0.029 14.0 0.1 2.0 2 1 0 2 2 2 1 Mitochondrial PGP phosphatase Response_reg PF00072.24 gi|257388739|ref|YP_003178512.1| - 3.6e-19 69.0 0.0 7.2e-19 68.0 0.0 1.5 1 0 0 1 1 1 1 Response regulator receiver domain HisKA PF00512.25 gi|257388739|ref|YP_003178512.1| - 1.3e-13 50.7 1.6 2.9e-13 49.7 1.6 1.6 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c PF02518.26 gi|257388739|ref|YP_003178512.1| - 1.9e-12 47.7 0.0 3.3e-12 46.9 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.10 gi|257388739|ref|YP_003178512.1| - 8.7e-09 35.6 0.3 6e-08 32.9 0.2 2.4 2 0 0 2 2 2 1 PAS fold PAS PF00989.25 gi|257388739|ref|YP_003178512.1| - 3.2e-08 33.5 0.0 8e-08 32.3 0.0 1.8 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.7 gi|257388739|ref|YP_003178512.1| - 1.9e-06 27.7 0.2 1.1e-05 25.3 0.0 2.3 2 0 0 2 2 2 1 PAS domain HATPase_c_2 PF13581.6 gi|257388739|ref|YP_003178512.1| - 4.5e-05 23.4 0.1 0.00012 22.0 0.1 1.7 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain PAS_9 PF13426.7 gi|257388739|ref|YP_003178512.1| - 0.00011 22.4 0.0 0.001 19.3 0.0 2.6 1 1 0 2 2 2 1 PAS domain OKR_DC_1_N PF03709.15 gi|257388739|ref|YP_003178512.1| - 0.0017 18.6 0.1 0.0072 16.6 0.0 2.1 3 0 0 3 3 3 1 Orn/Lys/Arg decarboxylase, N-terminal domain Aromatic_hydrox PF11723.8 gi|257388739|ref|YP_003178512.1| - 0.14 11.7 0.0 0.23 10.9 0.0 1.3 1 0 0 1 1 1 0 Homotrimeric ring hydroxylase ABC_tran PF00005.27 gi|257388741|ref|YP_003178514.1| - 1.6e-26 93.4 0.0 2.1e-26 93.0 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|257388741|ref|YP_003178514.1| - 2.5e-09 37.4 0.0 0.0015 18.4 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_23 PF13476.6 gi|257388741|ref|YP_003178514.1| - 0.0018 18.8 0.4 0.0028 18.2 0.4 1.2 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|257388741|ref|YP_003178514.1| - 0.0041 16.9 1.1 0.6 9.8 0.3 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_28 PF13521.6 gi|257388741|ref|YP_003178514.1| - 0.012 15.8 0.9 0.057 13.7 0.9 2.2 1 1 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|257388741|ref|YP_003178514.1| - 0.016 15.3 0.1 0.034 14.3 0.1 1.7 1 1 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 gi|257388741|ref|YP_003178514.1| - 0.023 14.9 0.0 0.039 14.2 0.0 1.3 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_16 PF13191.6 gi|257388741|ref|YP_003178514.1| - 0.025 15.0 0.1 0.049 14.0 0.1 1.6 1 1 0 1 1 1 0 AAA ATPase domain AAA_29 PF13555.6 gi|257388741|ref|YP_003178514.1| - 0.041 13.6 0.3 0.073 12.8 0.3 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|257388741|ref|YP_003178514.1| - 0.051 13.9 0.0 0.092 13.0 0.0 1.5 1 1 0 1 1 1 0 AAA domain SMC_N PF02463.19 gi|257388741|ref|YP_003178514.1| - 0.061 12.8 0.1 1 8.7 0.0 2.0 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA PF00004.29 gi|257388741|ref|YP_003178514.1| - 0.11 12.9 0.2 1.4 9.4 0.1 2.1 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) SRP54 PF00448.22 gi|257388741|ref|YP_003178514.1| - 0.15 11.7 0.2 0.23 11.1 0.2 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_30 PF13604.6 gi|257388741|ref|YP_003178514.1| - 0.19 11.4 0.6 0.42 10.3 0.2 1.7 2 0 0 2 2 2 0 AAA domain AAA_13 PF13166.6 gi|257388741|ref|YP_003178514.1| - 0.43 9.1 0.3 7.8 5.0 0.3 2.0 2 0 0 2 2 2 0 AAA domain DUF998 PF06197.13 gi|257388742|ref|YP_003178515.1| - 8e-19 68.0 32.3 1e-18 67.6 32.3 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF998) DUF2071 PF09844.9 gi|257388743|ref|YP_003178516.1| - 1.9e-48 164.9 0.1 2.1e-48 164.8 0.1 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (COG2071) DUF2071 PF09844.9 gi|257388744|ref|YP_003178517.1| - 3.2e-73 245.8 0.3 3.6e-73 245.7 0.3 1.0 1 0 0 1 1 1 1 Uncharacterized conserved protein (COG2071) ADC PF06314.11 gi|257388744|ref|YP_003178517.1| - 1.3e-05 24.8 0.0 1.8e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 Acetoacetate decarboxylase (ADC) Aldo_ket_red PF00248.21 gi|257388746|ref|YP_003178519.1| - 1.5e-69 234.4 0.0 1.9e-69 234.1 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family ABC2_membrane_3 PF12698.7 gi|257388747|ref|YP_003178520.1| - 2.7e-16 59.6 0.0 3.8e-16 59.1 0.0 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|257388747|ref|YP_003178520.1| - 8.8e-09 35.0 3.1 1.2e-08 34.6 2.7 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|257388747|ref|YP_003178520.1| - 0.00061 19.3 6.6 0.00061 19.3 6.6 2.0 2 0 0 2 2 2 1 ABC-2 type transporter ABC2_membrane_4 PF12730.7 gi|257388747|ref|YP_003178520.1| - 0.0012 18.9 6.2 0.0012 18.9 6.2 2.9 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|257388747|ref|YP_003178520.1| - 0.051 13.1 5.8 0.03 13.9 3.0 1.8 2 0 0 2 2 2 0 ABC-2 family transporter protein DUF4131 PF13567.6 gi|257388747|ref|YP_003178520.1| - 1.8 8.2 6.1 1.3 8.7 3.5 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) ABC2_membrane_3 PF12698.7 gi|257388748|ref|YP_003178521.1| - 6.7e-06 25.4 20.1 1.6e-05 24.2 19.2 2.1 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|257388748|ref|YP_003178521.1| - 2.2e-05 23.9 1.8 2.2e-05 23.9 1.8 3.4 3 1 0 3 3 3 1 ABC-2 family transporter protein DUF872 PF05915.12 gi|257388748|ref|YP_003178521.1| - 0.031 14.4 0.4 1.6 8.9 0.2 2.6 2 0 0 2 2 2 0 Eukaryotic protein of unknown function (DUF872) ABC_tran PF00005.27 gi|257388749|ref|YP_003178522.1| - 2.3e-28 99.4 0.0 3.7e-28 98.7 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|257388749|ref|YP_003178522.1| - 9.4e-13 48.6 0.0 3.2e-06 27.2 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_30 PF13604.6 gi|257388749|ref|YP_003178522.1| - 0.0075 16.0 0.0 0.013 15.2 0.0 1.6 1 1 0 1 1 1 1 AAA domain DUF4162 PF13732.6 gi|257388749|ref|YP_003178522.1| - 0.0093 16.7 0.1 0.097 13.4 0.1 2.4 1 1 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_23 PF13476.6 gi|257388749|ref|YP_003178522.1| - 0.011 16.2 0.0 0.019 15.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.6 gi|257388749|ref|YP_003178522.1| - 0.012 15.4 0.0 0.1 12.3 0.0 1.9 1 1 0 2 2 2 0 AAA ATPase domain SRP54 PF00448.22 gi|257388749|ref|YP_003178522.1| - 0.013 15.2 0.0 0.023 14.3 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_29 PF13555.6 gi|257388749|ref|YP_003178522.1| - 0.014 15.1 0.1 0.027 14.2 0.1 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_22 PF13401.6 gi|257388749|ref|YP_003178522.1| - 0.024 14.9 0.2 0.074 13.3 0.2 2.0 1 1 0 1 1 1 0 AAA domain AAA_27 PF13514.6 gi|257388749|ref|YP_003178522.1| - 0.037 13.6 0.0 0.07 12.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_13 PF13166.6 gi|257388749|ref|YP_003178522.1| - 0.065 11.9 0.1 6.7 5.2 0.0 2.1 2 0 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|257388749|ref|YP_003178522.1| - 0.1 12.3 0.2 0.39 10.4 0.1 2.0 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|257388749|ref|YP_003178522.1| - 0.15 12.2 0.3 0.79 9.9 0.3 2.2 1 1 0 1 1 1 0 AAA domain Rad17 PF03215.15 gi|257388749|ref|YP_003178522.1| - 0.22 11.4 0.0 0.37 10.7 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain Polyketide_cyc2 PF10604.9 gi|257388750|ref|YP_003178523.1| - 1.7e-09 38.1 3.1 5.2e-08 33.3 3.1 2.0 1 1 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.20 gi|257388750|ref|YP_003178523.1| - 0.00011 22.4 0.2 0.00015 22.0 0.2 1.2 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport DUF3047 PF11249.8 gi|257388750|ref|YP_003178523.1| - 0.043 13.2 0.0 0.051 13.0 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3047) Peripla_BP_2 PF01497.18 gi|257388751|ref|YP_003178524.1| - 1.2e-14 54.5 0.1 2.2e-14 53.6 0.1 1.5 1 1 0 1 1 1 1 Periplasmic binding protein TAT_signal PF10518.9 gi|257388751|ref|YP_003178524.1| - 0.0013 18.5 0.0 0.0022 17.8 0.0 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence zf-C2H2 PF00096.26 gi|257388752|ref|YP_003178525.1| - 0.0011 19.4 7.5 0.12 12.8 0.3 3.2 3 0 0 3 3 3 2 Zinc finger, C2H2 type zf-C2H2_6 PF13912.6 gi|257388752|ref|YP_003178525.1| - 0.0011 19.0 9.2 0.011 15.7 0.6 2.9 3 1 0 3 3 3 2 C2H2-type zinc finger ADK_lid PF05191.14 gi|257388752|ref|YP_003178525.1| - 0.0014 18.6 0.4 0.0014 18.6 0.4 2.2 2 1 0 2 2 2 1 Adenylate kinase, active site lid zf-C2H2_jaz PF12171.8 gi|257388752|ref|YP_003178525.1| - 0.0019 18.4 0.8 0.021 15.1 0.1 2.3 2 0 0 2 2 2 1 Zinc-finger double-stranded RNA-binding zf_UBZ PF18439.1 gi|257388752|ref|YP_003178525.1| - 0.0084 15.7 8.2 0.29 10.7 0.1 2.6 3 0 0 3 3 3 2 Ubiquitin-Binding Zinc Finger Zn_ribbon_recom PF13408.6 gi|257388752|ref|YP_003178525.1| - 0.011 16.2 0.3 0.062 13.8 0.1 2.0 2 0 0 2 2 2 0 Recombinase zinc beta ribbon domain zf-C2H2_11 PF16622.5 gi|257388752|ref|YP_003178525.1| - 0.014 15.1 0.8 0.38 10.6 0.0 2.2 2 0 0 2 2 2 0 zinc-finger C2H2-type DZR PF12773.7 gi|257388752|ref|YP_003178525.1| - 0.019 14.9 5.5 0.3 11.1 5.8 2.1 1 1 0 1 1 1 0 Double zinc ribbon FYVE PF01363.21 gi|257388752|ref|YP_003178525.1| - 0.073 13.2 3.5 0.081 13.1 3.5 1.3 1 0 0 1 1 1 0 FYVE zinc finger zf-C2H2_4 PF13894.6 gi|257388752|ref|YP_003178525.1| - 0.1 13.5 9.4 0.61 11.1 1.2 2.8 3 0 0 3 3 3 0 C2H2-type zinc finger HypA PF01155.19 gi|257388752|ref|YP_003178525.1| - 0.17 11.9 6.1 0.59 10.2 0.9 2.1 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA XPA_N PF01286.18 gi|257388752|ref|YP_003178525.1| - 0.34 11.0 6.7 7 6.8 0.4 2.6 2 0 0 2 2 2 0 XPA protein N-terminal DNA_ligase_ZBD PF03119.16 gi|257388752|ref|YP_003178525.1| - 0.36 10.9 4.3 0.49 10.5 2.4 2.3 2 1 1 3 3 3 0 NAD-dependent DNA ligase C4 zinc finger domain Rhodanese_C PF12368.8 gi|257388752|ref|YP_003178525.1| - 0.58 10.6 6.1 8.5 6.8 6.7 2.1 1 1 0 1 1 1 0 Rhodanase C-terminal Zn-ribbon_8 PF09723.10 gi|257388752|ref|YP_003178525.1| - 1.2 9.3 12.7 2.3 8.4 3.6 2.6 1 1 2 3 3 3 0 Zinc ribbon domain zinc-ribbons_6 PF07191.12 gi|257388752|ref|YP_003178525.1| - 1.8 8.6 7.1 7.8 6.6 7.1 2.1 1 1 0 1 1 1 0 zinc-ribbons CoA_binding PF02629.19 gi|257388753|ref|YP_003178526.1| - 3e-24 85.5 1.7 4.1e-24 85.1 0.6 1.8 2 0 0 2 2 2 1 CoA binding domain Ligase_CoA PF00549.19 gi|257388753|ref|YP_003178526.1| - 5.4e-14 52.3 0.3 1e-13 51.4 0.3 1.4 1 0 0 1 1 1 1 CoA-ligase Succ_CoA_lig PF13607.6 gi|257388753|ref|YP_003178526.1| - 5.4e-10 39.2 0.0 9.7e-10 38.4 0.0 1.4 1 0 0 1 1 1 1 Succinyl-CoA ligase like flavodoxin domain CoA_binding_2 PF13380.6 gi|257388753|ref|YP_003178526.1| - 1.2e-05 25.8 0.0 3.7e-05 24.2 0.0 1.8 2 0 0 2 2 2 1 CoA binding domain ATP-grasp_2 PF08442.10 gi|257388754|ref|YP_003178527.1| - 8e-65 218.2 0.9 1.3e-64 217.5 0.9 1.3 1 0 0 1 1 1 1 ATP-grasp domain ATP-grasp_5 PF13549.6 gi|257388754|ref|YP_003178527.1| - 1.2e-19 70.6 4.7 6.9e-19 68.2 3.5 2.3 2 1 0 2 2 2 1 ATP-grasp domain Ligase_CoA PF00549.19 gi|257388754|ref|YP_003178527.1| - 7.4e-14 51.8 0.8 1.8e-13 50.6 0.8 1.6 1 0 0 1 1 1 1 CoA-ligase CPSase_L_D2 PF02786.17 gi|257388754|ref|YP_003178527.1| - 7.6e-14 51.7 2.9 2.3e-11 43.6 0.4 2.4 3 0 0 3 3 3 2 Carbamoyl-phosphate synthase L chain, ATP binding domain ATP-grasp PF02222.22 gi|257388754|ref|YP_003178527.1| - 2.6e-07 30.3 0.4 5.3e-07 29.4 0.1 1.6 2 0 0 2 2 2 1 ATP-grasp domain GARS_A PF01071.19 gi|257388754|ref|YP_003178527.1| - 3.6e-06 26.9 1.2 8.3e-06 25.7 0.2 1.9 2 0 0 2 2 2 1 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain RimK PF08443.11 gi|257388754|ref|YP_003178527.1| - 0.028 14.0 0.0 0.12 11.9 0.0 1.9 2 0 0 2 2 2 0 RimK-like ATP-grasp domain PemK_toxin PF02452.17 gi|257388755|ref|YP_003178528.1| - 3.3e-29 101.5 0.0 3.7e-29 101.4 0.0 1.0 1 0 0 1 1 1 1 PemK-like, MazF-like toxin of type II toxin-antitoxin system MazE_antitoxin PF04014.18 gi|257388756|ref|YP_003178529.1| - 1.8e-11 43.7 0.4 1.8e-11 43.7 0.4 1.5 2 0 0 2 2 2 1 Antidote-toxin recognition MazE, bacterial antitoxin PrlF_antitoxin PF15937.5 gi|257388756|ref|YP_003178529.1| - 0.015 15.7 0.0 0.018 15.5 0.0 1.3 1 1 0 1 1 1 0 prlF antitoxin for toxin YhaV_toxin NTPase_I-T PF01931.18 gi|257388756|ref|YP_003178529.1| - 0.15 11.8 0.1 0.29 10.9 0.1 1.6 1 1 1 2 2 2 0 Protein of unknown function DUF84 AveC_like PF17198.4 gi|257388757|ref|YP_003178530.1| - 0.11 12.0 0.1 0.12 11.8 0.1 1.2 1 0 0 1 1 1 0 Spirocyclase AveC-like SIR2 PF02146.17 gi|257388758|ref|YP_003178531.1| - 2.4e-45 154.6 0.0 3e-45 154.3 0.0 1.1 1 0 0 1 1 1 1 Sir2 family T2SSE PF00437.20 gi|257388761|ref|YP_003178534.1| - 4.1e-47 160.5 0.0 5.9e-47 160.0 0.0 1.1 1 0 0 1 1 1 1 Type II/IV secretion system protein ABM PF03992.16 gi|257388761|ref|YP_003178534.1| - 0.054 13.6 0.1 0.17 12.0 0.1 1.8 1 0 0 1 1 1 0 Antibiotic biosynthesis monooxygenase FAST_1 PF06743.15 gi|257388761|ref|YP_003178534.1| - 0.067 13.2 0.0 0.2 11.6 0.0 1.9 1 0 0 1 1 1 0 FAST kinase-like protein, subdomain 1 AAA_29 PF13555.6 gi|257388761|ref|YP_003178534.1| - 0.19 11.5 0.0 0.37 10.6 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain T2SSF PF00482.23 gi|257388762|ref|YP_003178535.1| - 8.6e-37 125.9 12.2 5.1e-21 74.9 3.5 2.9 2 0 0 2 2 2 2 Type II secretion system (T2SS), protein F T2SSM PF04612.12 gi|257388762|ref|YP_003178535.1| - 0.32 11.0 2.1 15 5.6 0.2 3.1 3 0 0 3 3 3 0 Type II secretion system (T2SS), protein M DUF1129 PF06570.11 gi|257388762|ref|YP_003178535.1| - 0.76 9.2 4.6 0.74 9.3 0.1 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF1129) DNA_ligase_A_M PF01068.21 gi|257388763|ref|YP_003178536.1| - 4.8e-50 170.0 0.0 7.1e-50 169.5 0.0 1.2 1 0 0 1 1 1 1 ATP dependent DNA ligase domain DNA_ligase_A_N PF04675.14 gi|257388763|ref|YP_003178536.1| - 9.5e-34 117.2 0.0 2.1e-33 116.1 0.0 1.6 1 1 0 1 1 1 1 DNA ligase N terminus DNA_ligase_A_C PF04679.15 gi|257388763|ref|YP_003178536.1| - 3.7e-16 59.5 0.0 8.8e-16 58.3 0.0 1.7 1 0 0 1 1 1 1 ATP dependent DNA ligase C terminal region Lactamase_B_3 PF13483.6 gi|257388764|ref|YP_003178537.1| - 2.4e-29 102.3 0.2 3.1e-29 102.0 0.2 1.1 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|257388764|ref|YP_003178537.1| - 0.00012 21.6 1.5 0.0002 20.9 1.5 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain DJ-1_PfpI PF01965.24 gi|257388765|ref|YP_003178538.1| - 6e-15 55.4 0.5 7.7e-14 51.8 0.5 2.1 1 1 0 1 1 1 1 DJ-1/PfpI family ThiJ_like PF17124.5 gi|257388765|ref|YP_003178538.1| - 5.2e-09 36.1 0.0 1.2e-08 34.9 0.0 1.7 1 1 0 1 1 1 1 ThiJ/PfpI family-like ThuA PF06283.11 gi|257388765|ref|YP_003178538.1| - 0.02 15.1 0.1 0.021 15.1 0.1 1.2 1 0 0 1 1 1 0 Trehalose utilisation TP6A_N PF04406.14 gi|257388767|ref|YP_003178540.1| - 7.4e-15 54.7 0.5 1.3e-14 53.9 0.5 1.4 1 0 0 1 1 1 1 Type IIB DNA topoisomerase cpYpsA PF12694.7 gi|257388767|ref|YP_003178540.1| - 0.066 13.0 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 Circularly permutated YpsA SLOG family Topo-VIb_trans PF09239.11 gi|257388768|ref|YP_003178541.1| - 8.5e-63 210.9 0.0 2.4e-62 209.5 0.0 1.8 1 0 0 1 1 1 1 Topoisomerase VI B subunit, transducer Top6b_C PF18000.1 gi|257388768|ref|YP_003178541.1| - 1e-34 119.1 5.4 2e-34 118.2 4.2 2.2 2 0 0 2 2 2 1 Type 2 DNA topoisomerase 6 subunit B C-terminal domain HATPase_c PF02518.26 gi|257388768|ref|YP_003178541.1| - 4e-13 49.9 0.0 1.5e-12 48.0 0.0 2.0 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_3 PF13589.6 gi|257388768|ref|YP_003178541.1| - 1.7e-11 44.1 0.0 4.5e-11 42.7 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.6 gi|257388768|ref|YP_003178541.1| - 0.0072 16.3 6.3 0.018 15.0 0.0 3.8 4 0 0 4 4 4 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.6 gi|257388768|ref|YP_003178541.1| - 0.0078 16.1 0.3 0.026 14.4 0.0 2.0 2 0 0 2 2 2 1 GHKL domain Phage_GP20 PF06810.11 gi|257388768|ref|YP_003178541.1| - 0.0088 15.9 0.1 0.032 14.1 0.1 1.9 1 0 0 1 1 1 1 Phage minor structural protein GP20 MAF_flag10 PF01973.18 gi|257388768|ref|YP_003178541.1| - 0.037 13.7 0.0 0.079 12.6 0.0 1.5 1 0 0 1 1 1 0 Protein of unknown function DUF115 RP1-2 PF12042.8 gi|257388768|ref|YP_003178541.1| - 0.17 11.7 4.2 18 5.2 2.2 2.9 3 0 0 3 3 3 0 Tubuliform egg casing silk strands structural domain Virulence_fact PF13769.6 gi|257388768|ref|YP_003178541.1| - 0.35 11.1 3.8 27 5.1 0.4 3.8 2 1 0 2 2 2 0 Virulence factor DUF3140 PF11338.8 gi|257388768|ref|YP_003178541.1| - 2.7 8.5 4.7 1.1 9.8 0.4 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF3140) THOC7 PF05615.13 gi|257388768|ref|YP_003178541.1| - 6.9 7.0 8.7 7.7 6.8 2.8 2.6 2 0 0 2 2 2 0 Tho complex subunit 7 DNA_gyraseB PF00204.25 gi|257388769|ref|YP_003178542.1| - 3.8e-61 205.6 0.1 6.1e-61 204.9 0.1 1.3 1 0 0 1 1 1 1 DNA gyrase B DNA_gyraseB_C PF00986.21 gi|257388769|ref|YP_003178542.1| - 1.7e-29 101.8 0.0 3.8e-29 100.6 0.0 1.6 1 0 0 1 1 1 1 DNA gyrase B subunit, carboxyl terminus HATPase_c PF02518.26 gi|257388769|ref|YP_003178542.1| - 7.3e-24 84.4 0.0 1.7e-23 83.3 0.0 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Toprim PF01751.22 gi|257388769|ref|YP_003178542.1| - 2.7e-16 59.7 0.0 8.5e-16 58.1 0.0 1.9 2 0 0 2 2 2 1 Toprim domain HATPase_c_3 PF13589.6 gi|257388769|ref|YP_003178542.1| - 3.7e-05 23.6 0.0 7.7e-05 22.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DNA_topoisoIV PF00521.20 gi|257388770|ref|YP_003178543.1| - 2.9e-156 520.7 0.0 3.7e-156 520.3 0.0 1.1 1 0 0 1 1 1 1 DNA gyrase/topoisomerase IV, subunit A DNA_gyraseA_C PF03989.13 gi|257388770|ref|YP_003178543.1| - 5.5e-74 243.5 11.9 2.1e-14 52.7 0.2 6.6 6 0 0 6 6 6 6 DNA gyrase C-terminal domain, beta-propeller Nnf1 PF03980.14 gi|257388770|ref|YP_003178543.1| - 0.076 13.4 5.5 2.2 8.7 3.7 2.8 2 1 0 2 2 2 0 Nnf1 PspB PF06667.12 gi|257388770|ref|YP_003178543.1| - 4.5 7.4 4.6 36 4.5 0.6 2.5 2 0 0 2 2 2 0 Phage shock protein B NAD_binding_1 PF00175.21 gi|257388771|ref|YP_003178544.1| - 2.9e-15 56.9 0.0 1.2e-14 54.9 0.0 1.9 1 1 0 1 1 1 1 Oxidoreductase NAD-binding domain FAD_binding_6 PF00970.24 gi|257388771|ref|YP_003178544.1| - 3.1e-10 40.3 0.0 5.8e-10 39.4 0.0 1.3 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain NAD_binding_6 PF08030.12 gi|257388771|ref|YP_003178544.1| - 0.025 14.7 0.0 0.12 12.5 0.0 1.9 2 0 0 2 2 2 0 Ferric reductase NAD binding domain GlcNAc_2-epim PF07221.11 gi|257388772|ref|YP_003178545.1| - 3.8e-99 332.2 7.0 5e-99 331.8 7.0 1.2 1 0 0 1 1 1 1 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) Glyco_hydro_76 PF03663.14 gi|257388772|ref|YP_003178545.1| - 0.076 12.5 3.0 3.9 6.9 0.1 2.8 2 1 1 3 3 3 0 Glycosyl hydrolase family 76 C5-epim_C PF06662.13 gi|257388772|ref|YP_003178545.1| - 0.092 12.2 0.0 0.22 11.0 0.0 1.7 1 0 0 1 1 1 0 D-glucuronyl C5-epimerase C-terminus Arginase PF00491.21 gi|257388773|ref|YP_003178546.1| - 5.5e-77 259.0 1.4 6.5e-77 258.8 1.4 1.0 1 0 0 1 1 1 1 Arginase family HrcA_DNA-bdg PF03444.15 gi|257388774|ref|YP_003178547.1| - 3.5e-39 132.3 0.1 4.9e-39 131.9 0.1 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Rrf2 PF02082.20 gi|257388774|ref|YP_003178547.1| - 1.6e-07 31.6 0.0 3.3e-07 30.6 0.0 1.5 1 0 0 1 1 1 1 Transcriptional regulator HTH_11 PF08279.12 gi|257388774|ref|YP_003178547.1| - 3e-07 30.3 0.0 4.7e-07 29.6 0.0 1.3 1 0 0 1 1 1 1 HTH domain TrmB PF01978.19 gi|257388774|ref|YP_003178547.1| - 0.016 15.0 0.0 0.027 14.4 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Turandot PF07240.11 gi|257388774|ref|YP_003178547.1| - 0.024 14.6 0.0 0.1 12.6 0.0 2.0 2 0 0 2 2 2 0 Stress-inducible humoral factor Turandot HTH_38 PF13936.6 gi|257388774|ref|YP_003178547.1| - 0.057 13.2 0.0 0.12 12.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Peptidase_S8 PF00082.22 gi|257388775|ref|YP_003178548.1| - 3.3e-46 157.9 8.0 6e-46 157.1 8.0 1.4 1 0 0 1 1 1 1 Subtilase family CBM_5_12 PF02839.14 gi|257388775|ref|YP_003178548.1| - 1.3e-11 44.4 16.7 1.1e-05 25.7 6.2 3.4 2 0 0 2 2 2 2 Carbohydrate binding domain CBM_5_12_2 PF14600.6 gi|257388775|ref|YP_003178548.1| - 5.6e-05 23.0 12.0 0.0075 16.2 3.6 3.2 2 1 0 2 2 2 2 Cellulose-binding domain Pyr_redox_2 PF07992.14 gi|257388776|ref|YP_003178549.1| - 1.5e-41 142.6 0.3 1.8e-41 142.3 0.3 1.1 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox PF00070.27 gi|257388776|ref|YP_003178549.1| - 1.1e-07 32.3 1.1 3.6e-06 27.4 0.2 2.5 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|257388776|ref|YP_003178549.1| - 0.0061 16.6 0.8 1.3 9.0 0.1 3.0 3 0 0 3 3 3 2 FAD-NAD(P)-binding K_oxygenase PF13434.6 gi|257388776|ref|YP_003178549.1| - 0.075 12.2 0.0 6.5 5.8 0.0 2.3 2 0 0 2 2 2 0 L-lysine 6-monooxygenase (NADPH-requiring) AlaDh_PNT_C PF01262.21 gi|257388776|ref|YP_003178549.1| - 0.12 11.7 0.5 5.6 6.2 0.0 2.3 2 0 0 2 2 2 0 Alanine dehydrogenase/PNT, C-terminal domain PNP_UDP_1 PF01048.20 gi|257388778|ref|YP_003178551.1| - 6.5e-47 159.7 1.0 7.8e-47 159.5 1.0 1.1 1 0 0 1 1 1 1 Phosphorylase superfamily Acyl-CoA_dh_N PF02771.16 gi|257388778|ref|YP_003178551.1| - 0.017 15.8 0.2 0.091 13.4 0.1 2.2 1 1 2 3 3 3 0 Acyl-CoA dehydrogenase, N-terminal domain DAO_C PF16901.5 gi|257388778|ref|YP_003178551.1| - 0.047 13.5 0.1 0.086 12.7 0.1 1.4 1 0 0 1 1 1 0 C-terminal domain of alpha-glycerophosphate oxidase dCMP_cyt_deam_1 PF00383.23 gi|257388779|ref|YP_003178552.1| - 3.5e-15 55.7 0.2 4.1e-15 55.5 0.2 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region dCMP_cyt_deam_2 PF08211.12 gi|257388779|ref|YP_003178552.1| - 5.8e-13 49.2 1.3 7.5e-13 48.8 1.3 1.1 1 0 0 1 1 1 1 Cytidine and deoxycytidylate deaminase zinc-binding region LmjF365940-deam PF14421.6 gi|257388779|ref|YP_003178552.1| - 0.5 9.9 2.3 3.8 7.1 0.1 2.0 1 1 1 2 2 2 0 A distinct subfamily of CDD/CDA-like deaminases PGM_PMM_I PF02878.16 gi|257388780|ref|YP_003178553.1| - 2.5e-31 108.2 0.0 5.7e-31 107.1 0.0 1.6 1 0 0 1 1 1 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PGM_PMM_II PF02879.16 gi|257388780|ref|YP_003178553.1| - 5.4e-21 75.2 0.5 5e-20 72.0 0.5 2.3 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PGM_PMM_IV PF00408.20 gi|257388780|ref|YP_003178553.1| - 1.1e-10 41.5 2.0 3.7e-10 39.9 0.1 2.8 3 0 0 3 3 3 1 Phosphoglucomutase/phosphomannomutase, C-terminal domain PGM_PMM_III PF02880.16 gi|257388780|ref|YP_003178553.1| - 0.00011 22.3 0.1 0.00031 20.9 0.0 1.8 2 0 0 2 2 2 1 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DUF664 PF04978.12 gi|257388780|ref|YP_003178553.1| - 0.41 11.0 5.2 2.4 8.5 0.8 2.7 2 1 1 3 3 3 0 Protein of unknown function (DUF664) DUF555 PF04475.12 gi|257388782|ref|YP_003178555.1| - 8.2e-48 160.9 0.1 9.5e-48 160.7 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF555) CBS PF00571.28 gi|257388783|ref|YP_003178556.1| - 3e-19 69.2 3.7 4.5e-10 39.8 0.1 2.4 2 0 0 2 2 2 2 CBS domain HTH_31 PF13560.6 gi|257388783|ref|YP_003178556.1| - 2.4e-11 43.8 0.9 4e-11 43.1 0.9 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_3 PF01381.22 gi|257388783|ref|YP_003178556.1| - 7.9e-11 41.8 0.1 1.3e-10 41.2 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix HTH_19 PF12844.7 gi|257388783|ref|YP_003178556.1| - 3.3e-07 30.2 0.0 5.8e-07 29.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_25 PF13413.6 gi|257388783|ref|YP_003178556.1| - 0.00054 19.8 0.3 0.0012 18.7 0.2 1.7 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_37 PF13744.6 gi|257388783|ref|YP_003178556.1| - 0.00082 19.3 0.0 0.0015 18.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain Pou PF00157.17 gi|257388783|ref|YP_003178556.1| - 0.031 14.2 0.0 0.077 13.0 0.0 1.7 1 1 0 1 1 1 0 Pou domain - N-terminal to homeobox domain HTH_26 PF13443.6 gi|257388783|ref|YP_003178556.1| - 0.051 14.0 0.0 0.082 13.4 0.0 1.3 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain AIRS_C PF02769.22 gi|257388785|ref|YP_003178558.1| - 1.2e-21 77.4 0.0 2.1e-21 76.7 0.0 1.3 1 0 0 1 1 1 1 AIR synthase related protein, C-terminal domain AIRS PF00586.24 gi|257388785|ref|YP_003178558.1| - 9.3e-16 58.3 2.0 1.8e-15 57.3 2.0 1.5 1 0 0 1 1 1 1 AIR synthase related protein, N-terminal domain Peptidase_M50 PF02163.22 gi|257388786|ref|YP_003178559.1| - 0.0015 17.8 15.6 0.056 12.7 1.6 3.2 2 1 0 2 2 2 2 Peptidase family M50 DUF3021 PF11457.8 gi|257388786|ref|YP_003178559.1| - 0.15 12.4 4.9 0.41 11.0 4.9 1.9 1 1 0 1 1 1 0 Protein of unknown function (DUF3021) TraB PF01963.17 gi|257388787|ref|YP_003178560.1| - 5e-30 105.3 0.0 1.5e-19 70.9 0.0 2.3 2 0 0 2 2 2 2 TraB family PadR PF03551.14 gi|257388788|ref|YP_003178561.1| - 3.7e-17 62.0 0.4 4.5e-17 61.8 0.4 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family DUF1495 PF07381.11 gi|257388788|ref|YP_003178561.1| - 0.0026 17.5 0.0 0.0038 17.0 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) HTH_45 PF14947.6 gi|257388788|ref|YP_003178561.1| - 0.014 15.4 0.1 0.019 14.9 0.1 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_27 PF13463.6 gi|257388788|ref|YP_003178561.1| - 0.018 15.5 0.1 0.025 15.1 0.1 1.4 1 1 0 1 1 1 0 Winged helix DNA-binding domain TrmB PF01978.19 gi|257388788|ref|YP_003178561.1| - 0.024 14.5 0.1 0.031 14.1 0.1 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF4364 PF14277.6 gi|257388788|ref|YP_003178561.1| - 0.052 13.3 0.0 0.062 13.0 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) Penicillinase_R PF03965.16 gi|257388788|ref|YP_003178561.1| - 0.071 13.5 0.1 0.086 13.2 0.1 1.3 1 0 0 1 1 1 0 Penicillinase repressor zinc_ribbon_2 PF13240.6 gi|257388790|ref|YP_003178563.1| - 0.039 13.7 0.5 0.66 9.8 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain STT3 PF02516.14 gi|257388791|ref|YP_003178564.1| - 1.2e-23 83.8 21.5 2.2e-23 83.0 19.6 2.0 2 0 0 2 2 2 1 Oligosaccharyl transferase STT3 subunit AglB_L1 PF18079.1 gi|257388791|ref|YP_003178564.1| - 1.2e-22 79.9 4.9 3.1e-22 78.7 4.9 1.7 1 0 0 1 1 1 1 Archaeal glycosylation protein B long peripheral domain Glycos_transf_2 PF00535.26 gi|257388792|ref|YP_003178565.1| - 2e-22 79.8 0.0 2.6e-22 79.4 0.0 1.1 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|257388792|ref|YP_003178565.1| - 6.2e-13 49.2 1.2 1.1e-11 45.1 1.2 2.1 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|257388792|ref|YP_003178565.1| - 5.3e-06 26.1 0.1 7.9e-06 25.5 0.1 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_transf_21 PF13506.6 gi|257388792|ref|YP_003178565.1| - 0.00073 19.0 0.1 0.0036 16.8 0.0 2.1 2 1 0 2 2 2 1 Glycosyl transferase family 21 Glyco_trans_2_3 PF13632.6 gi|257388792|ref|YP_003178565.1| - 0.047 13.6 0.6 0.14 12.0 0.6 1.9 1 1 0 1 1 1 0 Glycosyl transferase family group 2 Glycos_transf_1 PF00534.20 gi|257388793|ref|YP_003178566.1| - 5.4e-29 100.9 0.0 7.9e-29 100.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|257388793|ref|YP_003178566.1| - 9.7e-27 94.0 0.0 2.5e-26 92.7 0.0 1.7 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|257388793|ref|YP_003178566.1| - 1.5e-07 31.7 0.0 3.2e-07 30.6 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.6 gi|257388793|ref|YP_003178566.1| - 1.4e-06 28.8 7.9 1.4e-06 28.8 7.9 2.2 2 0 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.6 gi|257388793|ref|YP_003178566.1| - 0.0016 18.4 0.1 0.0042 17.1 0.0 1.7 2 0 0 2 2 2 1 Glycosyltransferase Family 4 DEK_C PF08766.11 gi|257388793|ref|YP_003178566.1| - 0.098 12.6 0.0 0.21 11.5 0.0 1.5 1 0 0 1 1 1 0 DEK C terminal domain Sulfatase PF00884.23 gi|257388794|ref|YP_003178567.1| - 3.5e-33 115.3 0.0 5.3e-33 114.7 0.0 1.2 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.22 gi|257388794|ref|YP_003178567.1| - 8.4e-10 38.8 0.2 5.6e-05 22.9 0.0 2.3 2 0 0 2 2 2 2 Type I phosphodiesterase / nucleotide pyrophosphatase DUF229 PF02995.17 gi|257388794|ref|YP_003178567.1| - 3.5e-05 22.6 0.0 0.00038 19.2 0.0 2.0 2 0 0 2 2 2 1 Protein of unknown function (DUF229) DUF1501 PF07394.12 gi|257388794|ref|YP_003178567.1| - 6.5e-05 22.2 0.1 0.0001 21.5 0.1 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1501) Metalloenzyme PF01676.18 gi|257388794|ref|YP_003178567.1| - 0.01 15.2 0.0 0.048 13.0 0.0 1.9 2 0 0 2 2 2 0 Metalloenzyme superfamily NPBW PF15180.6 gi|257388794|ref|YP_003178567.1| - 0.038 13.8 0.0 0.077 12.9 0.0 1.4 1 0 0 1 1 1 0 Neuropeptides B and W Phosphoesterase PF04185.14 gi|257388794|ref|YP_003178567.1| - 0.057 12.6 0.0 0.11 11.7 0.0 1.4 1 0 0 1 1 1 0 Phosphoesterase family Biotin_carb_C PF02785.19 gi|257388794|ref|YP_003178567.1| - 0.094 12.8 0.0 0.23 11.6 0.0 1.6 1 0 0 1 1 1 0 Biotin carboxylase C-terminal domain Polysacc_synt PF01943.17 gi|257388795|ref|YP_003178568.1| - 5.4e-22 78.5 15.6 5.4e-22 78.5 15.6 2.4 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.6 gi|257388795|ref|YP_003178568.1| - 2e-20 73.3 16.0 2e-20 73.3 16.0 3.4 2 1 0 3 3 3 1 Polysaccharide biosynthesis C-terminal domain Polysacc_synt_3 PF13440.6 gi|257388795|ref|YP_003178568.1| - 5e-15 55.5 5.7 5e-15 55.5 5.7 1.7 2 0 0 2 2 2 1 Polysaccharide biosynthesis protein MurJ PF03023.14 gi|257388795|ref|YP_003178568.1| - 2.7e-08 32.8 15.9 5.7e-08 31.8 15.5 1.7 1 1 0 1 1 1 1 Lipid II flippase MurJ MatE PF01554.18 gi|257388795|ref|YP_003178568.1| - 7.9e-08 32.1 2.9 7.9e-08 32.1 2.9 3.5 3 1 0 3 3 3 2 MatE Glycos_transf_1 PF00534.20 gi|257388796|ref|YP_003178569.1| - 2.1e-42 144.6 0.0 3.5e-42 143.8 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|257388796|ref|YP_003178569.1| - 9.8e-35 119.9 1.1 5e-34 117.6 0.2 2.3 3 0 0 3 3 3 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.6 gi|257388796|ref|YP_003178569.1| - 7.7e-15 55.1 0.2 3.3e-14 53.1 0.0 2.1 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|257388796|ref|YP_003178569.1| - 9e-10 38.8 0.5 4.1e-09 36.6 0.2 2.2 2 1 0 2 2 2 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|257388796|ref|YP_003178569.1| - 4.5e-05 24.0 0.2 4.5e-05 24.0 0.2 2.4 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain RNA_pol_Rpb6 PF01192.22 gi|257388796|ref|YP_003178569.1| - 0.015 15.2 1.2 0.29 11.1 0.5 2.9 2 1 1 3 3 3 0 RNA polymerase Rpb6 Glycos_transf_1 PF00534.20 gi|257388797|ref|YP_003178570.1| - 8.8e-37 126.3 0.0 1.8e-36 125.3 0.0 1.4 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.6 gi|257388797|ref|YP_003178570.1| - 9.4e-33 113.5 0.4 1.7e-32 112.7 0.4 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|257388797|ref|YP_003178570.1| - 1.1e-17 64.5 0.1 2.7e-17 63.3 0.1 1.6 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|257388797|ref|YP_003178570.1| - 6.2e-15 56.0 0.3 6.2e-15 56.0 0.3 2.2 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_2 PF13524.6 gi|257388797|ref|YP_003178570.1| - 6.7e-11 42.4 0.0 1.5e-10 41.3 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|257388797|ref|YP_003178570.1| - 1.3e-07 31.7 0.0 2.1e-07 31.0 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like Nitro_FeMo-Co PF02579.17 gi|257388797|ref|YP_003178570.1| - 0.11 12.8 0.3 9.2 6.7 0.0 2.9 1 1 1 2 2 2 0 Dinitrogenase iron-molybdenum cofactor Lactamase_B_3 PF13483.6 gi|257388798|ref|YP_003178571.1| - 4.7e-22 78.6 0.4 6.5e-22 78.2 0.4 1.2 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|257388798|ref|YP_003178571.1| - 3.9e-15 55.9 1.3 6.9e-15 55.1 1.3 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|257388798|ref|YP_003178571.1| - 7.9e-08 32.5 7.0 2.2e-07 31.1 7.0 1.9 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily NAD_binding_2 PF03446.15 gi|257388799|ref|YP_003178572.1| - 2e-40 138.5 0.1 2.9e-40 138.0 0.1 1.2 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase NAD_binding_11 PF14833.6 gi|257388799|ref|YP_003178572.1| - 5.4e-27 94.5 0.4 8.5e-27 93.8 0.4 1.3 1 0 0 1 1 1 1 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 2-Hacid_dh_C PF02826.19 gi|257388799|ref|YP_003178572.1| - 3.3e-05 23.3 0.0 5.3e-05 22.7 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ApbA PF02558.16 gi|257388799|ref|YP_003178572.1| - 0.00014 21.5 0.0 0.00027 20.6 0.0 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA IlvN PF07991.12 gi|257388799|ref|YP_003178572.1| - 0.001 18.7 0.0 0.0015 18.1 0.0 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain F420_oxidored PF03807.17 gi|257388799|ref|YP_003178572.1| - 0.0025 18.3 0.0 0.0052 17.3 0.0 1.5 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent Shikimate_DH PF01488.20 gi|257388799|ref|YP_003178572.1| - 0.0071 16.4 0.0 0.013 15.6 0.0 1.4 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase 3HCDH_N PF02737.18 gi|257388799|ref|YP_003178572.1| - 0.15 11.9 0.0 0.25 11.2 0.0 1.4 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ABATE PF07336.11 gi|257388800|ref|YP_003178573.1| - 0.05 14.3 4.1 0.034 14.8 2.2 1.7 1 1 1 2 2 2 0 Putative stress-induced transcription regulator IF-2B PF01008.17 gi|257388801|ref|YP_003178574.1| - 3.7e-73 246.2 0.3 4.2e-73 246.0 0.3 1.0 1 0 0 1 1 1 1 Initiation factor 2 subunit family PEP-utilizers PF00391.23 gi|257388801|ref|YP_003178574.1| - 0.41 10.4 3.2 2.9 7.7 0.4 3.3 3 1 1 4 4 4 0 PEP-utilising enzyme, mobile domain PfkB PF00294.24 gi|257388803|ref|YP_003178576.1| - 6.3e-40 137.3 5.9 1.1e-39 136.5 5.9 1.4 1 1 0 1 1 1 1 pfkB family carbohydrate kinase FAD_binding_3 PF01494.19 gi|257388803|ref|YP_003178576.1| - 0.035 13.3 0.0 0.061 12.6 0.0 1.3 1 0 0 1 1 1 0 FAD binding domain APH PF01636.23 gi|257388804|ref|YP_003178577.1| - 4.3e-19 69.4 4.1 4.3e-19 69.4 4.1 1.4 2 0 0 2 2 2 1 Phosphotransferase enzyme family Fructosamin_kin PF03881.14 gi|257388804|ref|YP_003178577.1| - 4.8e-06 26.0 0.0 1.7e-05 24.1 0.0 1.8 1 1 0 1 1 1 1 Fructosamine kinase SIR2_2 PF13289.6 gi|257388804|ref|YP_003178577.1| - 0.0079 16.3 0.0 0.018 15.1 0.0 1.6 1 0 0 1 1 1 1 SIR2-like domain Kdo PF06293.14 gi|257388804|ref|YP_003178577.1| - 0.14 11.4 0.0 0.4 10.0 0.0 1.7 2 0 0 2 2 2 0 Lipopolysaccharide kinase (Kdo/WaaP) family RuBisCO_large PF00016.20 gi|257388805|ref|YP_003178578.1| - 4.6e-92 308.4 0.6 9.4e-92 307.4 0.6 1.5 1 1 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, catalytic domain RuBisCO_large_N PF02788.16 gi|257388805|ref|YP_003178578.1| - 3.4e-39 133.7 0.0 6.8e-39 132.8 0.0 1.5 1 0 0 1 1 1 1 Ribulose bisphosphate carboxylase large chain, N-terminal domain AP_endonuc_2 PF01261.24 gi|257388805|ref|YP_003178578.1| - 0.029 13.8 0.6 0.062 12.7 0.6 1.7 1 1 0 1 1 1 0 Xylose isomerase-like TIM barrel adh_short_C2 PF13561.6 gi|257388806|ref|YP_003178579.1| - 2.2e-63 214.0 3.3 2.5e-63 213.8 3.3 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase adh_short PF00106.25 gi|257388806|ref|YP_003178579.1| - 4.2e-60 202.6 2.5 5.4e-60 202.2 2.5 1.1 1 0 0 1 1 1 1 short chain dehydrogenase KR PF08659.10 gi|257388806|ref|YP_003178579.1| - 1.7e-13 50.9 1.4 2.5e-13 50.3 1.4 1.1 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|257388806|ref|YP_003178579.1| - 7.8e-06 25.5 0.6 1.7e-05 24.4 0.6 1.6 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.15 gi|257388806|ref|YP_003178579.1| - 0.005 16.0 0.0 0.0083 15.3 0.0 1.3 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein GDP_Man_Dehyd PF16363.5 gi|257388806|ref|YP_003178579.1| - 0.014 14.8 0.1 0.032 13.6 0.0 1.6 1 1 0 1 1 1 0 GDP-mannose 4,6 dehydratase Bac_luciferase PF00296.20 gi|257388807|ref|YP_003178580.1| - 1.5e-82 277.5 1.0 1.7e-82 277.3 1.0 1.0 1 0 0 1 1 1 1 Luciferase-like monooxygenase zf-C2H2_4 PF13894.6 gi|257388808|ref|YP_003178581.1| - 0.00017 22.2 0.3 0.00019 22.0 0.3 1.1 1 0 0 1 1 1 1 C2H2-type zinc finger zf-C2H2 PF00096.26 gi|257388808|ref|YP_003178581.1| - 0.0016 18.8 0.8 0.002 18.5 0.8 1.2 1 0 0 1 1 1 1 Zinc finger, C2H2 type zf-met PF12874.7 gi|257388808|ref|YP_003178581.1| - 0.034 14.5 0.1 0.039 14.3 0.1 1.1 1 0 0 1 1 1 0 Zinc-finger of C2H2 type zf-C2H2_2 PF12756.7 gi|257388808|ref|YP_003178581.1| - 0.054 13.8 0.1 0.054 13.8 0.1 1.0 1 0 0 1 1 1 0 C2H2 type zinc-finger (2 copies) zf-DBF PF07535.12 gi|257388808|ref|YP_003178581.1| - 0.07 13.3 0.1 0.074 13.2 0.1 1.2 1 0 0 1 1 1 0 DBF zinc finger MAF_flag10 PF01973.18 gi|257388809|ref|YP_003178582.1| - 5.4e-14 52.3 0.0 7e-14 51.9 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function DUF115 Pterin_bind PF00809.22 gi|257388810|ref|YP_003178583.1| - 6.8e-39 134.0 0.0 8.5e-39 133.7 0.0 1.1 1 0 0 1 1 1 1 Pterin binding enzyme DZR PF12773.7 gi|257388811|ref|YP_003178584.1| - 1.6e-05 24.9 1.0 2.4e-05 24.3 1.0 1.2 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|257388811|ref|YP_003178584.1| - 0.0001 21.8 2.5 0.00016 21.3 2.5 1.3 1 0 0 1 1 1 1 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|257388811|ref|YP_003178584.1| - 0.0047 17.6 0.3 0.0054 17.4 0.3 1.1 1 0 0 1 1 1 1 zinc-ribbon family zf-ribbon_3 PF13248.6 gi|257388811|ref|YP_003178584.1| - 0.025 14.0 1.6 0.039 13.4 1.6 1.3 1 0 0 1 1 1 0 zinc-ribbon domain HemY_N PF07219.13 gi|257388811|ref|YP_003178584.1| - 0.05 13.8 0.0 0.074 13.3 0.0 1.3 1 0 0 1 1 1 0 HemY protein N-terminus DUF4381 PF14316.6 gi|257388811|ref|YP_003178584.1| - 0.077 13.2 0.2 0.091 13.0 0.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4381) Nudix_N_2 PF14803.6 gi|257388811|ref|YP_003178584.1| - 0.093 12.7 1.5 4.6 7.3 0.1 2.4 2 0 0 2 2 2 0 Nudix N-terminal DUF1616 PF07760.11 gi|257388811|ref|YP_003178584.1| - 0.12 11.7 0.0 0.13 11.6 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF1616) CcmD PF04995.14 gi|257388811|ref|YP_003178584.1| - 0.13 12.3 2.5 0.23 11.6 2.5 1.3 1 0 0 1 1 1 0 Heme exporter protein D (CcmD) IPTL-CTERM PF18203.1 gi|257388811|ref|YP_003178584.1| - 2.4 8.1 8.3 3.9 7.5 8.3 1.3 1 0 0 1 1 1 0 IPTL-CTERM motif A2L_zn_ribbon PF08792.10 gi|257388811|ref|YP_003178584.1| - 4 7.3 6.8 16 5.4 6.8 1.9 1 1 0 1 1 1 0 A2L zinc ribbon domain SpoU_methylase PF00588.19 gi|257388813|ref|YP_003178586.1| - 2.1e-29 102.5 0.0 3e-29 102.0 0.0 1.3 1 0 0 1 1 1 1 SpoU rRNA Methylase family ATPase PF06745.13 gi|257388814|ref|YP_003178587.1| - 0.0028 17.0 0.0 0.031 13.6 0.0 2.2 1 1 0 1 1 1 1 KaiC GatB_N PF02934.15 gi|257388815|ref|YP_003178588.1| - 2.4e-66 223.9 0.0 3.2e-66 223.5 0.0 1.2 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|257388815|ref|YP_003178588.1| - 3.1e-22 79.1 0.0 7.7e-22 77.8 0.0 1.7 2 0 0 2 2 2 1 GatB domain GAD PF02938.14 gi|257388815|ref|YP_003178588.1| - 1.4e-16 60.5 0.0 2.8e-16 59.5 0.0 1.6 1 0 0 1 1 1 1 GAD domain YqeY PF09424.10 gi|257388815|ref|YP_003178588.1| - 0.004 17.2 0.3 0.0076 16.3 0.3 1.4 1 0 0 1 1 1 1 Yqey-like protein PE PF00934.20 gi|257388815|ref|YP_003178588.1| - 0.038 14.3 1.2 0.038 14.3 1.2 2.3 2 0 0 2 2 2 0 PE family AFOR_N PF02730.15 gi|257388815|ref|YP_003178588.1| - 0.054 13.4 0.2 0.12 12.2 0.2 1.5 1 0 0 1 1 1 0 Aldehyde ferredoxin oxidoreductase, N-terminal domain tRNA_synt_1c_R1 PF04558.15 gi|257388815|ref|YP_003178588.1| - 0.08 12.9 0.0 0.15 12.0 0.0 1.4 1 0 0 1 1 1 0 Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 Rod-binding PF10135.9 gi|257388815|ref|YP_003178588.1| - 0.15 12.7 0.5 0.47 11.1 0.1 2.1 2 0 0 2 2 2 0 Rod binding protein Toprim_3 PF13362.6 gi|257388815|ref|YP_003178588.1| - 3.2 8.2 6.7 1.1 9.7 1.9 2.5 2 0 0 2 2 2 0 Toprim domain LPAM_2 PF13627.6 gi|257388816|ref|YP_003178589.1| - 0.24 11.3 2.1 0.37 10.7 2.1 1.3 1 0 0 1 1 1 0 Prokaryotic lipoprotein-attachment site Lyase_1 PF00206.20 gi|257388817|ref|YP_003178590.1| - 5.4e-109 364.4 0.2 8e-109 363.8 0.2 1.3 1 0 0 1 1 1 1 Lyase FumaraseC_C PF10415.9 gi|257388817|ref|YP_003178590.1| - 2.6e-24 85.4 0.5 7.1e-24 84.0 0.5 1.8 1 0 0 1 1 1 1 Fumarase C C-terminus ADSL_C PF10397.9 gi|257388817|ref|YP_003178590.1| - 3.9 8.1 7.4 0.45 11.1 0.6 3.0 4 1 0 4 4 4 0 Adenylosuccinate lyase C-terminus XPG_I PF00867.18 gi|257388818|ref|YP_003178591.1| - 6.3e-21 74.5 0.3 1.4e-20 73.4 0.0 1.8 2 0 0 2 2 2 1 XPG I-region XPG_N PF00752.17 gi|257388818|ref|YP_003178591.1| - 7.1e-13 48.9 0.0 1.2e-12 48.2 0.0 1.3 1 0 0 1 1 1 1 XPG N-terminal domain 5_3_exonuc PF01367.20 gi|257388818|ref|YP_003178591.1| - 4e-07 30.5 0.3 1.6e-06 28.6 0.0 2.0 2 0 0 2 2 2 1 5'-3' exonuclease, C-terminal SAM fold Auto_anti-p27 PF06677.12 gi|257388819|ref|YP_003178592.1| - 1.1 9.4 7.0 1.2 9.4 0.9 2.9 3 0 0 3 3 3 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Acetyltransf_1 PF00583.25 gi|257388820|ref|YP_003178593.1| - 2.9e-06 27.5 0.0 4.5e-06 26.9 0.0 1.4 1 1 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|257388820|ref|YP_003178593.1| - 0.00043 20.6 0.0 0.0006 20.2 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|257388820|ref|YP_003178593.1| - 0.0055 16.6 0.0 0.0073 16.3 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|257388820|ref|YP_003178593.1| - 0.046 13.8 0.0 0.08 13.1 0.0 1.4 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase DZR PF12773.7 gi|257388821|ref|YP_003178594.1| - 0.0034 17.4 13.7 0.037 14.1 2.9 1.3 1 1 1 2 2 2 2 Double zinc ribbon zf-IS66 PF13005.7 gi|257388821|ref|YP_003178594.1| - 0.0038 17.6 0.4 0.59 10.6 0.1 2.1 2 0 0 2 2 2 2 zinc-finger binding domain of transposase IS66 HypA PF01155.19 gi|257388821|ref|YP_003178594.1| - 0.009 16.0 1.4 0.0094 16.0 1.4 1.0 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|257388821|ref|YP_003178594.1| - 0.023 14.8 4.3 0.041 14.0 4.3 1.4 1 1 0 1 1 1 0 Zinc ribbon domain NCD3G PF07562.14 gi|257388821|ref|YP_003178594.1| - 0.023 14.6 1.7 0.026 14.5 1.7 1.1 1 0 0 1 1 1 0 Nine Cysteines Domain of family 3 GPCR NinF PF05810.12 gi|257388821|ref|YP_003178594.1| - 0.046 13.6 0.4 0.051 13.4 0.4 1.1 1 0 0 1 1 1 0 NinF protein zf-ribbon_3 PF13248.6 gi|257388821|ref|YP_003178594.1| - 0.12 11.9 2.0 0.33 10.4 2.0 1.7 1 1 0 1 1 1 0 zinc-ribbon domain Methyltransf_11 PF08241.12 gi|257388822|ref|YP_003178595.1| - 6.3e-17 62.0 0.2 9.6e-17 61.4 0.2 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|257388822|ref|YP_003178595.1| - 1.1e-13 51.7 0.3 1.8e-13 51.0 0.3 1.3 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|257388822|ref|YP_003178595.1| - 3.3e-11 43.0 0.0 9.8e-11 41.4 0.0 1.6 1 1 1 2 2 2 1 ubiE/COQ5 methyltransferase family Methyltransf_31 PF13847.6 gi|257388822|ref|YP_003178595.1| - 2.2e-09 37.3 0.0 3.4e-09 36.7 0.0 1.3 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|257388822|ref|YP_003178595.1| - 6.1e-09 36.5 0.1 1e-08 35.8 0.1 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_23 PF13489.6 gi|257388822|ref|YP_003178595.1| - 6.9e-09 35.7 0.0 1e-08 35.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.15 gi|257388822|ref|YP_003178595.1| - 0.00016 21.6 0.0 0.00019 21.4 0.0 1.3 1 0 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_24 PF13578.6 gi|257388822|ref|YP_003178595.1| - 0.043 14.8 0.9 0.072 14.1 0.9 1.5 1 1 0 1 1 1 0 Methyltransferase domain Methyltransf_2 PF00891.18 gi|257388822|ref|YP_003178595.1| - 0.086 12.1 2.2 1.2 8.4 2.0 2.1 1 1 0 1 1 1 0 O-methyltransferase domain DUF2249 PF10006.9 gi|257388822|ref|YP_003178595.1| - 0.13 12.1 0.3 1.1 9.1 0.1 2.4 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2249) DUF3054 PF11255.8 gi|257388823|ref|YP_003178596.1| - 1.7e-22 80.0 11.9 2.1e-22 79.7 11.9 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF3054) CoA_binding_3 PF13727.6 gi|257388823|ref|YP_003178596.1| - 0.051 13.6 2.8 0.088 12.8 2.8 1.4 1 0 0 1 1 1 0 CoA-binding domain DUF2157 PF09925.9 gi|257388823|ref|YP_003178596.1| - 0.3 10.9 7.3 0.24 11.2 4.6 1.8 1 1 1 2 2 2 0 Predicted membrane protein (DUF2157) DUF956 PF06115.11 gi|257388824|ref|YP_003178597.1| - 0.053 13.2 0.0 0.057 13.1 0.0 1.0 1 0 0 1 1 1 0 Domain of unknown function (DUF956) PetG PF02529.15 gi|257388825|ref|YP_003178598.1| - 0.042 13.7 1.0 0.042 13.7 1.0 2.3 2 1 1 3 3 3 0 Cytochrome B6-F complex subunit 5 OCD_Mu_crystall PF02423.15 gi|257388826|ref|YP_003178599.1| - 1.3e-63 214.8 1.1 1.5e-63 214.6 1.1 1.0 1 0 0 1 1 1 1 Ornithine cyclodeaminase/mu-crystallin family Shikimate_DH PF01488.20 gi|257388826|ref|YP_003178599.1| - 0.0017 18.4 0.0 0.0028 17.7 0.0 1.3 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase NAD_binding_7 PF13241.6 gi|257388826|ref|YP_003178599.1| - 0.096 13.1 0.1 0.2 12.1 0.1 1.4 1 0 0 1 1 1 0 Putative NAD(P)-binding UDPG_MGDP_dh_C PF03720.15 gi|257388826|ref|YP_003178599.1| - 0.099 13.1 1.9 0.58 10.6 0.2 2.2 1 1 1 2 2 2 0 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CRISPR_Cse1 PF09481.10 gi|257388826|ref|YP_003178599.1| - 0.11 11.5 0.4 2 7.4 0.0 2.0 1 1 1 2 2 2 0 CRISPR-associated protein Cse1 (CRISPR_cse1) SPP PF06550.11 gi|257388827|ref|YP_003178600.1| - 1.2e-82 277.6 13.1 1.7e-82 277.1 13.1 1.2 1 0 0 1 1 1 1 Signal-peptide peptidase, presenilin aspartyl protease Peptidase_A22B PF04258.13 gi|257388827|ref|YP_003178600.1| - 6.1e-08 32.5 5.0 0.00034 20.2 0.5 2.9 3 0 0 3 3 3 2 Signal peptide peptidase Presenilin PF01080.17 gi|257388827|ref|YP_003178600.1| - 0.02 13.7 3.2 0.5 9.1 0.0 3.0 3 0 0 3 3 3 0 Presenilin Gar1 PF04410.14 gi|257388828|ref|YP_003178601.1| - 7.7e-09 35.5 0.0 7.7e-09 35.5 0.0 1.0 1 0 0 1 1 1 1 Gar1/Naf1 RNA binding region SRP19 PF01922.17 gi|257388829|ref|YP_003178602.1| - 8.6e-24 84.3 0.0 9.9e-24 84.1 0.0 1.1 1 0 0 1 1 1 1 SRP19 protein Peripla_BP_2 PF01497.18 gi|257388830|ref|YP_003178603.1| - 7.6e-23 81.3 1.4 1.2e-22 80.6 1.4 1.4 1 0 0 1 1 1 1 Periplasmic binding protein Hom_end_hint PF05203.16 gi|257388830|ref|YP_003178603.1| - 0.037 14.0 0.0 0.056 13.4 0.0 1.2 1 0 0 1 1 1 0 Hom_end-associated Hint NPV_P10 PF05531.12 gi|257388830|ref|YP_003178603.1| - 0.069 13.6 0.0 0.18 12.3 0.0 1.6 1 0 0 1 1 1 0 Nucleopolyhedrovirus P10 protein DUF3880 PF12996.7 gi|257388830|ref|YP_003178603.1| - 0.1 12.7 0.0 0.25 11.4 0.0 1.7 1 0 0 1 1 1 0 DUF based on E. rectale Gene description (DUF3880) FecCD PF01032.18 gi|257388831|ref|YP_003178604.1| - 9.1e-90 300.8 30.6 1.5e-89 300.1 30.4 1.5 1 1 0 1 1 1 1 FecCD transport family ABC-3 PF00950.17 gi|257388831|ref|YP_003178604.1| - 0.0073 15.8 20.6 0.013 15.0 20.6 1.4 1 0 0 1 1 1 1 ABC 3 transport family Hint_2 PF13403.6 gi|257388831|ref|YP_003178604.1| - 0.0074 16.6 0.0 0.55 10.5 0.0 2.3 2 0 0 2 2 2 1 Hint domain ABC_tran PF00005.27 gi|257388832|ref|YP_003178605.1| - 1.6e-29 103.2 0.0 2.6e-29 102.5 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|257388832|ref|YP_003178605.1| - 1.3e-06 28.5 0.0 0.00022 21.1 0.0 2.1 2 0 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|257388832|ref|YP_003178605.1| - 0.00014 21.4 0.0 0.0043 16.5 0.0 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|257388832|ref|YP_003178605.1| - 0.0017 18.7 0.2 0.0041 17.5 0.2 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|257388832|ref|YP_003178605.1| - 0.0027 18.2 0.0 0.0041 17.7 0.0 1.3 1 0 0 1 1 1 1 AAA domain Zeta_toxin PF06414.12 gi|257388832|ref|YP_003178605.1| - 0.0088 15.3 0.0 0.018 14.3 0.0 1.5 1 0 0 1 1 1 1 Zeta toxin AAA_30 PF13604.6 gi|257388832|ref|YP_003178605.1| - 0.011 15.5 0.0 0.031 14.0 0.0 1.7 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.6 gi|257388832|ref|YP_003178605.1| - 0.047 13.9 0.2 0.93 9.8 0.2 2.7 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit DLIC PF05783.11 gi|257388832|ref|YP_003178605.1| - 0.048 12.5 0.0 0.074 11.9 0.0 1.2 1 0 0 1 1 1 0 Dynein light intermediate chain (DLIC) AAA_29 PF13555.6 gi|257388832|ref|YP_003178605.1| - 0.053 13.3 0.0 0.1 12.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_33 PF13671.6 gi|257388832|ref|YP_003178605.1| - 0.064 13.4 1.2 0.27 11.4 0.1 2.3 2 1 0 3 3 3 0 AAA domain cobW PF02492.19 gi|257388832|ref|YP_003178605.1| - 0.079 12.5 0.0 0.16 11.6 0.0 1.5 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain RsgA_GTPase PF03193.16 gi|257388832|ref|YP_003178605.1| - 0.14 12.1 0.0 0.22 11.4 0.0 1.3 1 0 0 1 1 1 0 RsgA GTPase AAA_22 PF13401.6 gi|257388832|ref|YP_003178605.1| - 0.15 12.3 0.0 0.33 11.2 0.0 1.7 1 0 0 1 1 1 0 AAA domain DUF3584 PF12128.8 gi|257388832|ref|YP_003178605.1| - 0.17 9.3 0.2 0.24 8.8 0.2 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) NB-ARC PF00931.22 gi|257388832|ref|YP_003178605.1| - 0.19 10.9 0.0 0.3 10.2 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain DUF1494 PF07379.11 gi|257388833|ref|YP_003178606.1| - 0.1 12.4 0.2 0.2 11.5 0.2 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF1494) DUF2250 PF10007.9 gi|257388834|ref|YP_003178607.1| - 1.3e-05 25.2 0.0 2.5e-05 24.3 0.0 1.5 1 1 0 1 1 1 1 Uncharacterized protein conserved in archaea (DUF2250) HTH_45 PF14947.6 gi|257388834|ref|YP_003178607.1| - 1.7e-05 24.7 0.0 1.9e-05 24.6 0.0 1.1 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_IclR PF09339.10 gi|257388834|ref|YP_003178607.1| - 0.11 12.3 0.0 0.19 11.5 0.0 1.5 1 1 0 1 1 1 0 IclR helix-turn-helix domain MaoC_dehydratas PF01575.19 gi|257388835|ref|YP_003178608.1| - 8e-18 64.2 0.0 1e-17 63.8 0.0 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 gi|257388835|ref|YP_003178608.1| - 8.6e-09 35.6 0.1 1.3e-08 35.1 0.1 1.3 1 0 0 1 1 1 1 N-terminal half of MaoC dehydratase FabA PF07977.13 gi|257388835|ref|YP_003178608.1| - 0.0066 16.1 0.0 0.0092 15.6 0.0 1.2 1 0 0 1 1 1 1 FabA-like domain 4HBT_2 PF13279.6 gi|257388835|ref|YP_003178608.1| - 0.015 15.7 0.0 0.018 15.6 0.0 1.3 1 1 0 1 1 1 0 Thioesterase-like superfamily 4HBT PF03061.22 gi|257388835|ref|YP_003178608.1| - 0.053 13.9 0.0 0.1 13.0 0.0 1.5 1 0 0 1 1 1 0 Thioesterase superfamily COX2 PF00116.20 gi|257388836|ref|YP_003178609.1| - 1.3e-17 63.8 0.1 3.2e-17 62.5 0.1 1.7 1 1 0 1 1 1 1 Cytochrome C oxidase subunit II, periplasmic domain COX2_TM PF02790.15 gi|257388836|ref|YP_003178609.1| - 9.5e-14 51.3 1.2 1.6e-13 50.6 1.2 1.4 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, transmembrane domain Cupredoxin_1 PF13473.6 gi|257388836|ref|YP_003178609.1| - 0.00085 19.4 0.0 0.0025 17.9 0.0 1.9 1 1 0 1 1 1 1 Cupredoxin-like domain DUF3413 PF11893.8 gi|257388836|ref|YP_003178609.1| - 0.032 13.4 0.3 0.046 12.9 0.3 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF3413) bMG6 PF17962.1 gi|257388836|ref|YP_003178609.1| - 0.038 14.1 0.7 0.19 11.9 0.3 2.0 2 0 0 2 2 2 0 Bacterial macroglobulin domain 6 DUF2569 PF10754.9 gi|257388836|ref|YP_003178609.1| - 0.051 14.0 0.7 0.082 13.3 0.7 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2569) Sulf_transp PF04143.14 gi|257388836|ref|YP_003178609.1| - 0.073 12.6 1.9 0.093 12.3 1.9 1.1 1 0 0 1 1 1 0 Sulphur transport TrbC PF04956.13 gi|257388836|ref|YP_003178609.1| - 0.096 12.9 1.8 0.85 9.9 0.6 2.2 2 0 0 2 2 2 0 TrbC/VIRB2 family UbiA PF01040.18 gi|257388837|ref|YP_003178610.1| - 3.9e-58 196.7 22.3 3.9e-58 196.7 22.3 2.5 1 1 1 2 2 2 1 UbiA prenyltransferase family COX15-CtaA PF02628.15 gi|257388837|ref|YP_003178610.1| - 0.00017 20.8 16.3 0.00084 18.5 8.5 4.6 3 2 0 4 4 4 2 Cytochrome oxidase assembly protein DUF2070 PF09843.9 gi|257388838|ref|YP_003178611.1| - 0.0047 15.3 3.3 0.006 14.9 3.3 1.1 1 0 0 1 1 1 1 Predicted membrane protein (DUF2070) Gate PF07670.14 gi|257388838|ref|YP_003178611.1| - 0.0092 16.2 2.3 0.018 15.3 2.3 1.4 1 0 0 1 1 1 1 Nucleoside recognition PEN-2 PF10251.9 gi|257388838|ref|YP_003178611.1| - 0.022 15.2 0.2 0.062 13.7 0.2 1.7 1 0 0 1 1 1 0 Presenilin enhancer-2 subunit of gamma secretase Sensor PF13796.6 gi|257388839|ref|YP_003178612.1| - 7e-29 101.0 27.1 1.5e-28 99.9 27.1 1.5 1 1 0 1 1 1 1 Putative sensor Rdx PF10262.9 gi|257388840|ref|YP_003178613.1| - 1e-15 57.7 0.0 1.1e-15 57.5 0.0 1.0 1 0 0 1 1 1 1 Rdx family ABC_tran PF00005.27 gi|257388841|ref|YP_003178614.1| - 7.2e-30 104.3 0.0 1.2e-29 103.6 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|257388841|ref|YP_003178614.1| - 1.5e-16 61.1 0.0 1.8e-09 37.9 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_30 PF13604.6 gi|257388841|ref|YP_003178614.1| - 2.1e-05 24.3 0.0 4.3e-05 23.3 0.0 1.6 1 0 0 1 1 1 1 AAA domain AAA_23 PF13476.6 gi|257388841|ref|YP_003178614.1| - 5.5e-05 23.8 0.0 7.7e-05 23.3 0.0 1.1 1 0 0 1 1 1 1 AAA domain AAA_15 PF13175.6 gi|257388841|ref|YP_003178614.1| - 0.00014 21.7 0.0 0.26 11.0 0.1 2.1 2 0 0 2 2 2 2 AAA ATPase domain IstB_IS21 PF01695.17 gi|257388841|ref|YP_003178614.1| - 0.00053 19.8 0.0 0.5 10.1 0.1 2.1 2 0 0 2 2 2 2 IstB-like ATP binding protein SMC_N PF02463.19 gi|257388841|ref|YP_003178614.1| - 0.0015 18.1 0.0 0.16 11.4 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_16 PF13191.6 gi|257388841|ref|YP_003178614.1| - 0.0015 19.0 0.0 0.0028 18.1 0.0 1.4 1 0 0 1 1 1 1 AAA ATPase domain AAA_29 PF13555.6 gi|257388841|ref|YP_003178614.1| - 0.0023 17.6 0.2 0.0046 16.7 0.2 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_33 PF13671.6 gi|257388841|ref|YP_003178614.1| - 0.0024 18.0 0.2 0.018 15.2 0.2 2.4 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|257388841|ref|YP_003178614.1| - 0.0037 17.6 0.0 0.0067 16.7 0.0 1.5 1 1 0 1 1 1 1 AAA domain TsaE PF02367.17 gi|257388841|ref|YP_003178614.1| - 0.0043 17.0 0.1 0.0077 16.2 0.1 1.3 1 0 0 1 1 1 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE MMR_HSR1 PF01926.23 gi|257388841|ref|YP_003178614.1| - 0.007 16.4 0.0 0.03 14.4 0.0 2.0 2 0 0 2 2 2 1 50S ribosome-binding GTPase RsgA_GTPase PF03193.16 gi|257388841|ref|YP_003178614.1| - 0.013 15.4 0.1 0.021 14.7 0.1 1.2 1 0 0 1 1 1 0 RsgA GTPase AAA PF00004.29 gi|257388841|ref|YP_003178614.1| - 0.017 15.6 0.0 0.044 14.2 0.0 1.7 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_28 PF13521.6 gi|257388841|ref|YP_003178614.1| - 0.026 14.8 0.1 0.069 13.4 0.1 1.7 1 0 0 1 1 1 0 AAA domain AAA_5 PF07728.14 gi|257388841|ref|YP_003178614.1| - 0.03 14.3 0.0 0.69 9.9 0.1 2.4 2 0 0 2 2 2 0 AAA domain (dynein-related subfamily) cobW PF02492.19 gi|257388841|ref|YP_003178614.1| - 0.041 13.5 0.0 0.067 12.8 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain SRP54 PF00448.22 gi|257388841|ref|YP_003178614.1| - 0.096 12.3 0.1 0.14 11.7 0.1 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_27 PF13514.6 gi|257388841|ref|YP_003178614.1| - 0.1 12.2 0.0 0.18 11.4 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|257388841|ref|YP_003178614.1| - 0.12 11.9 2.3 0.16 11.5 1.0 2.1 1 1 1 2 2 2 0 AAA domain NACHT PF05729.12 gi|257388841|ref|YP_003178614.1| - 0.13 12.1 0.1 0.4 10.6 0.1 1.8 2 0 0 2 2 2 0 NACHT domain ATP_bind_1 PF03029.17 gi|257388841|ref|YP_003178614.1| - 0.22 11.3 0.1 0.38 10.5 0.1 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein ABC_ATPase PF09818.9 gi|257388841|ref|YP_003178614.1| - 0.31 9.8 0.2 0.65 8.7 0.2 1.4 2 0 0 2 2 2 0 Predicted ATPase of the ABC class ABC2_membrane PF01061.24 gi|257388842|ref|YP_003178615.1| - 4.3e-21 75.3 9.4 6.2e-21 74.8 9.4 1.2 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_3 PF12698.7 gi|257388842|ref|YP_003178615.1| - 7.5e-10 38.4 2.5 7.5e-10 38.4 2.5 2.0 1 1 1 2 2 2 2 ABC-2 family transporter protein ABC2_membrane_2 PF12679.7 gi|257388842|ref|YP_003178615.1| - 3.1e-06 26.7 6.4 3.1e-06 26.7 6.4 1.6 2 0 0 2 2 2 1 ABC-2 family transporter protein DUF420 PF04238.12 gi|257388843|ref|YP_003178616.1| - 3.3e-32 111.6 11.2 5.2e-32 110.9 11.2 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF420) DUF2306 PF10067.9 gi|257388843|ref|YP_003178616.1| - 0.22 11.7 14.0 0.016 15.4 5.4 2.4 1 1 1 2 2 2 0 Predicted membrane protein (DUF2306) Cytochrom_B561 PF03188.16 gi|257388843|ref|YP_003178616.1| - 1.2 9.3 14.1 0.71 10.0 6.8 2.4 2 1 1 3 3 3 0 Eukaryotic cytochrome b561 B12-binding PF02310.19 gi|257388844|ref|YP_003178617.1| - 7.5e-22 77.6 0.9 1e-21 77.2 0.7 1.3 1 1 1 2 2 2 1 B12 binding domain IMPDH PF00478.25 gi|257388844|ref|YP_003178617.1| - 0.097 11.7 0.0 0.12 11.3 0.0 1.1 1 0 0 1 1 1 0 IMP dehydrogenase / GMP reductase domain MeaB PF03308.16 gi|257388845|ref|YP_003178618.1| - 2.1e-91 305.6 2.4 2.6e-91 305.3 2.4 1.0 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB cobW PF02492.19 gi|257388845|ref|YP_003178618.1| - 4.9e-07 29.5 1.4 7.4e-06 25.7 1.4 2.3 1 1 0 1 1 1 1 CobW/HypB/UreG, nucleotide-binding domain ATP_bind_1 PF03029.17 gi|257388845|ref|YP_003178618.1| - 2.6e-05 24.1 0.1 0.00013 21.9 0.0 2.0 2 1 0 2 2 2 1 Conserved hypothetical ATP binding protein SRP54 PF00448.22 gi|257388845|ref|YP_003178618.1| - 0.00011 21.9 0.2 0.00035 20.2 0.2 1.8 1 1 0 1 1 1 1 SRP54-type protein, GTPase domain NTPase_1 PF03266.15 gi|257388845|ref|YP_003178618.1| - 0.00012 22.1 0.2 0.00031 20.7 0.2 1.7 1 0 0 1 1 1 1 NTPase AAA_30 PF13604.6 gi|257388845|ref|YP_003178618.1| - 0.00012 21.9 0.1 0.00029 20.6 0.1 1.6 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|257388845|ref|YP_003178618.1| - 0.00022 21.7 0.7 0.0012 19.3 0.7 2.3 1 1 0 1 1 1 1 AAA ATPase domain GTP_EFTU PF00009.27 gi|257388845|ref|YP_003178618.1| - 0.00079 19.0 0.1 0.51 9.8 0.0 2.3 2 0 0 2 2 2 2 Elongation factor Tu GTP binding domain AAA_22 PF13401.6 gi|257388845|ref|YP_003178618.1| - 0.0019 18.5 0.0 0.0053 17.0 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_29 PF13555.6 gi|257388845|ref|YP_003178618.1| - 0.0034 17.1 0.1 0.0072 16.0 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain Zeta_toxin PF06414.12 gi|257388845|ref|YP_003178618.1| - 0.006 15.9 0.0 0.01 15.1 0.0 1.3 1 0 0 1 1 1 1 Zeta toxin ABC_tran PF00005.27 gi|257388845|ref|YP_003178618.1| - 0.0085 16.6 0.0 0.014 15.9 0.0 1.4 1 0 0 1 1 1 1 ABC transporter NB-ARC PF00931.22 gi|257388845|ref|YP_003178618.1| - 0.014 14.6 0.0 0.023 13.9 0.0 1.3 1 0 0 1 1 1 0 NB-ARC domain MobB PF03205.14 gi|257388845|ref|YP_003178618.1| - 0.032 14.1 0.1 0.064 13.2 0.1 1.7 1 1 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B RsgA_GTPase PF03193.16 gi|257388845|ref|YP_003178618.1| - 0.047 13.6 0.0 0.44 10.4 0.0 2.2 2 0 0 2 2 2 0 RsgA GTPase AAA_18 PF13238.6 gi|257388845|ref|YP_003178618.1| - 0.047 14.2 0.9 0.13 12.8 0.2 2.0 2 1 0 2 2 2 0 AAA domain AAA_19 PF13245.6 gi|257388845|ref|YP_003178618.1| - 0.049 14.0 0.2 0.12 12.7 0.1 1.7 2 0 0 2 2 1 0 AAA domain ATPase PF06745.13 gi|257388845|ref|YP_003178618.1| - 0.063 12.6 0.2 0.14 11.4 0.1 1.8 2 0 0 2 2 2 0 KaiC CbiA PF01656.23 gi|257388845|ref|YP_003178618.1| - 0.066 13.3 0.0 0.11 12.6 0.0 1.4 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain Ploopntkinase3 PF18751.1 gi|257388845|ref|YP_003178618.1| - 0.076 12.9 0.1 0.36 10.7 0.0 1.9 2 0 0 2 2 2 0 P-loop Nucleotide Kinase3 PRK PF00485.18 gi|257388845|ref|YP_003178618.1| - 0.077 12.7 0.1 0.19 11.4 0.1 1.7 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family KAP_NTPase PF07693.14 gi|257388845|ref|YP_003178618.1| - 0.09 12.0 0.0 0.09 12.0 0.0 1.2 1 0 0 1 1 1 0 KAP family P-loop domain AAA_25 PF13481.6 gi|257388845|ref|YP_003178618.1| - 0.091 12.3 0.2 0.27 10.8 0.2 1.9 1 1 0 1 1 1 0 AAA domain NACHT PF05729.12 gi|257388845|ref|YP_003178618.1| - 0.096 12.6 0.0 0.25 11.2 0.0 1.7 1 0 0 1 1 1 0 NACHT domain AAA_17 PF13207.6 gi|257388845|ref|YP_003178618.1| - 0.11 12.9 0.1 0.35 11.3 0.1 1.8 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.6 gi|257388845|ref|YP_003178618.1| - 0.13 12.5 1.6 0.23 11.7 0.2 2.0 2 0 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.23 gi|257388845|ref|YP_003178618.1| - 0.16 12.1 0.1 0.57 10.3 0.0 1.9 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_33 PF13671.6 gi|257388845|ref|YP_003178618.1| - 0.18 12.0 1.0 0.27 11.4 0.1 1.8 2 0 0 2 2 2 0 AAA domain KTI12 PF08433.10 gi|257388845|ref|YP_003178618.1| - 0.19 11.1 0.0 0.33 10.4 0.0 1.3 1 0 0 1 1 1 0 Chromatin associated protein KTI12 Abhydrolase_6 PF12697.7 gi|257388846|ref|YP_003178619.1| - 1.1e-20 75.2 10.9 1.1e-20 75.2 10.9 1.3 2 0 0 2 2 2 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|257388846|ref|YP_003178619.1| - 8e-14 51.9 0.1 1.4e-12 47.8 0.1 2.5 1 1 0 1 1 1 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|257388846|ref|YP_003178619.1| - 8.2e-07 28.5 0.1 2.6e-06 26.9 0.1 1.8 1 1 0 1 1 1 1 Serine aminopeptidase, S33 OB_aCoA_assoc PF01796.17 gi|257388847|ref|YP_003178620.1| - 6e-10 39.0 1.4 9.1e-10 38.4 1.4 1.3 1 0 0 1 1 1 1 DUF35 OB-fold domain, acyl-CoA-associated DUF35_N PF12172.8 gi|257388847|ref|YP_003178620.1| - 0.0016 18.3 2.1 0.0026 17.6 2.1 1.4 1 0 0 1 1 1 1 Rubredoxin-like zinc ribbon domain (DUF35_N) Zn_Tnp_IS1595 PF12760.7 gi|257388847|ref|YP_003178620.1| - 0.053 13.5 0.2 0.086 12.8 0.2 1.3 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Thiolase_N PF00108.23 gi|257388849|ref|YP_003178622.1| - 1.1e-30 106.8 1.5 1.9e-30 106.1 1.5 1.4 1 0 0 1 1 1 1 Thiolase, N-terminal domain ketoacyl-synt PF00109.26 gi|257388849|ref|YP_003178622.1| - 6.5e-11 42.3 4.0 6.5e-11 42.3 4.0 3.1 2 2 1 4 4 4 1 Beta-ketoacyl synthase, N-terminal domain Thiolase_C PF02803.18 gi|257388849|ref|YP_003178622.1| - 4.1e-08 32.9 0.2 1.3e-07 31.3 0.2 1.9 1 0 0 1 1 1 1 Thiolase, C-terminal domain ACP_syn_III PF08545.10 gi|257388849|ref|YP_003178622.1| - 0.00059 19.6 4.4 0.0033 17.3 0.8 2.5 2 0 0 2 2 2 1 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Ketoacyl-synt_C PF02801.22 gi|257388849|ref|YP_003178622.1| - 1.2 9.1 7.4 3.3 7.8 3.2 3.3 3 1 0 3 3 3 0 Beta-ketoacyl synthase, C-terminal domain Bactofilin PF04519.13 gi|257388851|ref|YP_003178624.1| - 3.7e-13 49.6 8.9 1.1e-09 38.5 0.6 3.3 2 1 1 3 3 3 3 Polymer-forming cytoskeletal Hexapep PF00132.24 gi|257388851|ref|YP_003178624.1| - 1.8e-08 33.8 12.6 0.11 12.2 0.0 6.2 5 1 1 6 6 6 4 Bacterial transferase hexapeptide (six repeats) DUF3494 PF11999.8 gi|257388851|ref|YP_003178624.1| - 0.0082 15.8 0.2 0.52 9.9 0.0 2.6 1 1 1 2 2 2 1 Protein of unknown function (DUF3494) Hexapep_2 PF14602.6 gi|257388851|ref|YP_003178624.1| - 0.029 14.1 10.4 0.55 10.0 0.0 5.0 4 2 0 5 5 5 0 Hexapeptide repeat of succinyl-transferase DUF3672 PF12421.8 gi|257388851|ref|YP_003178624.1| - 0.054 13.4 0.2 20 5.1 0.1 2.9 2 1 0 2 2 2 0 Fibronectin type III protein PAS_4 PF08448.10 gi|257388852|ref|YP_003178625.1| - 2.8e-20 72.6 11.3 2e-09 37.7 0.1 3.9 4 1 0 4 4 4 2 PAS fold HATPase_c PF02518.26 gi|257388852|ref|YP_003178625.1| - 4.1e-17 62.7 0.0 7.6e-17 61.8 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.7 gi|257388852|ref|YP_003178625.1| - 6.4e-15 55.3 0.0 8.4e-10 38.8 0.0 2.4 2 0 0 2 2 2 2 PAS domain PAS_8 PF13188.7 gi|257388852|ref|YP_003178625.1| - 2.5e-14 52.9 0.0 1.6e-07 31.2 0.0 3.5 3 0 0 3 3 3 2 PAS domain HisKA PF00512.25 gi|257388852|ref|YP_003178625.1| - 2.3e-11 43.5 3.7 1.2e-10 41.3 0.4 2.8 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS PF00989.25 gi|257388852|ref|YP_003178625.1| - 5.6e-11 42.4 0.1 6.3e-10 39.1 0.1 2.5 2 0 0 2 2 2 1 PAS fold PAS_3 PF08447.12 gi|257388852|ref|YP_003178625.1| - 6.8e-05 23.1 0.0 0.047 14.0 0.0 2.5 2 0 0 2 2 2 2 PAS fold Response_reg PF00072.24 gi|257388852|ref|YP_003178625.1| - 0.0008 19.6 0.0 0.0057 16.8 0.0 2.3 2 0 0 2 2 2 1 Response regulator receiver domain OKR_DC_1_N PF03709.15 gi|257388852|ref|YP_003178625.1| - 0.005 17.1 0.0 0.013 15.7 0.0 1.7 1 0 0 1 1 1 1 Orn/Lys/Arg decarboxylase, N-terminal domain CMV_1a_C PF12503.8 gi|257388852|ref|YP_003178625.1| - 0.042 13.8 0.0 0.08 12.9 0.0 1.4 1 0 0 1 1 1 0 Cucumber mosaic virus 1a protein C terminal HATPase_c_2 PF13581.6 gi|257388852|ref|YP_003178625.1| - 0.093 12.7 0.7 1.5 8.8 0.0 2.8 2 1 0 2 2 2 0 Histidine kinase-like ATPase domain MMR_HSR1_C PF08438.10 gi|257388853|ref|YP_003178626.1| - 2e-31 108.8 0.0 3.1e-31 108.2 0.0 1.3 1 0 0 1 1 1 1 GTPase of unknown function C-terminal MMR_HSR1 PF01926.23 gi|257388853|ref|YP_003178626.1| - 4.1e-20 72.0 0.0 2.1e-19 69.7 0.0 2.1 3 0 0 3 3 3 1 50S ribosome-binding GTPase TGS PF02824.21 gi|257388853|ref|YP_003178626.1| - 3.6e-12 46.1 0.1 2.1e-11 43.7 0.0 2.1 2 0 0 2 2 2 1 TGS domain FeoB_N PF02421.18 gi|257388853|ref|YP_003178626.1| - 3.2e-09 36.5 0.0 5.7e-08 32.4 0.0 2.4 3 0 0 3 3 3 1 Ferrous iron transport protein B UbiA PF01040.18 gi|257388854|ref|YP_003178627.1| - 1.5e-14 53.9 24.0 1.9e-14 53.6 23.3 1.6 1 1 0 1 1 1 1 UbiA prenyltransferase family MHC2-interact PF09307.10 gi|257388856|ref|YP_003178629.1| - 0.059 13.4 0.8 0.084 12.9 0.2 1.6 1 1 1 2 2 2 0 CLIP, MHC2 interacting HTH_5 PF01022.20 gi|257388857|ref|YP_003178630.1| - 1.3e-09 37.7 0.0 3.4e-09 36.4 0.0 1.6 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|257388857|ref|YP_003178630.1| - 5.6e-09 35.9 0.0 1.4e-08 34.7 0.0 1.6 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_11 PF08279.12 gi|257388857|ref|YP_003178630.1| - 0.0014 18.5 0.0 0.0045 16.9 0.0 1.8 2 0 0 2 2 2 1 HTH domain DUF2089 PF09862.9 gi|257388857|ref|YP_003178630.1| - 0.0021 18.1 0.0 0.0026 17.8 0.0 1.4 1 1 0 1 1 1 1 Protein of unknown function (DUF2089) TrmB PF01978.19 gi|257388857|ref|YP_003178630.1| - 0.0022 17.8 0.0 0.0039 17.0 0.0 1.5 2 0 0 2 2 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.6 gi|257388857|ref|YP_003178630.1| - 0.014 15.0 0.0 0.023 14.2 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding MazG-like PF12643.7 gi|257388857|ref|YP_003178630.1| - 0.024 14.9 0.0 0.043 14.1 0.0 1.5 1 1 1 2 2 2 0 MazG-like family MarR_2 PF12802.7 gi|257388857|ref|YP_003178630.1| - 0.024 14.5 0.0 0.058 13.3 0.0 1.6 1 1 1 2 2 2 0 MarR family HTH_28 PF13518.6 gi|257388857|ref|YP_003178630.1| - 0.034 14.3 0.0 0.064 13.4 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain GntR PF00392.21 gi|257388857|ref|YP_003178630.1| - 0.037 13.7 0.0 0.066 12.9 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family HTH_DeoR PF08220.12 gi|257388857|ref|YP_003178630.1| - 0.038 13.7 0.0 0.069 12.9 0.0 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain Rrf2 PF02082.20 gi|257388857|ref|YP_003178630.1| - 0.038 14.3 0.0 0.081 13.3 0.0 1.5 2 0 0 2 2 2 0 Transcriptional regulator FtsK_gamma PF09397.10 gi|257388857|ref|YP_003178630.1| - 0.043 13.6 0.0 0.33 10.8 0.0 2.1 1 1 1 2 2 2 0 Ftsk gamma domain HTH_12 PF08461.10 gi|257388857|ref|YP_003178630.1| - 0.044 13.7 0.1 0.062 13.2 0.1 1.5 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_45 PF14947.6 gi|257388857|ref|YP_003178630.1| - 0.081 12.9 0.0 0.11 12.5 0.0 1.2 1 0 0 1 1 1 0 Winged helix-turn-helix Spond_N PF06468.13 gi|257388858|ref|YP_003178631.1| - 2.9e-05 24.3 0.0 4.8e-05 23.6 0.0 1.3 1 0 0 1 1 1 1 Spondin_N Aminotran_1_2 PF00155.21 gi|257388860|ref|YP_003178633.1| - 1.1e-62 212.4 0.0 1.5e-62 211.8 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class I and II DegT_DnrJ_EryC1 PF01041.17 gi|257388860|ref|YP_003178633.1| - 1.2e-11 44.6 0.0 1.8e-11 44.0 0.0 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Beta_elim_lyase PF01212.21 gi|257388860|ref|YP_003178633.1| - 3.2e-06 26.7 0.0 6.4e-06 25.7 0.0 1.4 1 0 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.19 gi|257388860|ref|YP_003178633.1| - 0.0061 15.6 0.0 0.02 13.8 0.0 1.7 1 1 0 1 1 1 1 Aminotransferase class-V Cys_Met_Meta_PP PF01053.20 gi|257388860|ref|YP_003178633.1| - 0.018 13.6 0.0 0.042 12.4 0.0 1.5 2 0 0 2 2 2 0 Cys/Met metabolism PLP-dependent enzyme Aminotran_3 PF00202.21 gi|257388860|ref|YP_003178633.1| - 0.078 11.6 0.2 0.16 10.6 0.0 1.5 2 0 0 2 2 2 0 Aminotransferase class-III DUF745 PF05335.13 gi|257388860|ref|YP_003178633.1| - 1.9 8.2 8.5 0.27 11.0 0.4 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF745) Vac_Fusion PF02346.16 gi|257388861|ref|YP_003178634.1| - 0.033 13.8 0.0 0.033 13.8 0.0 1.2 1 0 0 1 1 1 0 Chordopoxvirus multifunctional envelope protein A27 AvrPtoB_bdg PF16847.5 gi|257388861|ref|YP_003178634.1| - 0.17 12.4 0.3 0.19 12.2 0.3 1.2 1 0 0 1 1 1 0 Avirulence AvrPtoB, BAK1-binding domain Metallophos PF00149.28 gi|257388862|ref|YP_003178635.1| - 1.5e-08 35.4 0.1 2.9e-08 34.4 0.1 1.5 1 1 0 1 1 1 1 Calcineurin-like phosphoesterase DUF3463 PF11946.8 gi|257388862|ref|YP_003178635.1| - 0.16 11.7 0.0 0.27 11.0 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF3463) MutS_II PF05188.17 gi|257388862|ref|YP_003178635.1| - 0.24 11.7 0.0 0.38 11.0 0.0 1.2 1 0 0 1 1 1 0 MutS domain II Diphthami_syn_2 PF01902.17 gi|257388864|ref|YP_003178637.1| - 4.5e-55 186.5 0.0 7.4e-55 185.8 0.0 1.3 1 1 0 1 1 1 1 Diphthamide synthase QueC PF06508.13 gi|257388864|ref|YP_003178637.1| - 0.047 13.2 0.0 0.066 12.7 0.0 1.3 1 0 0 1 1 1 0 Queuosine biosynthesis protein QueC Usp PF00582.26 gi|257388865|ref|YP_003178638.1| - 4.8e-57 192.4 4.0 4.9e-29 101.6 0.2 2.1 2 0 0 2 2 2 2 Universal stress protein family DUF373 PF04123.13 gi|257388866|ref|YP_003178639.1| - 8.8e-101 337.7 4.2 1e-100 337.5 4.2 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF373) Peptidase_S49 PF01343.18 gi|257388867|ref|YP_003178640.1| - 1.6e-38 132.1 0.0 2.6e-38 131.4 0.0 1.3 1 0 0 1 1 1 1 Peptidase family S49 SDH_sah PF01972.16 gi|257388867|ref|YP_003178640.1| - 0.042 12.8 0.0 0.062 12.3 0.0 1.1 1 0 0 1 1 1 0 Serine dehydrogenase proteinase CLP_protease PF00574.23 gi|257388867|ref|YP_003178640.1| - 0.11 12.3 0.0 15 5.4 0.0 2.2 2 0 0 2 2 2 0 Clp protease PAC2 PF09754.9 gi|257388868|ref|YP_003178641.1| - 4.1e-43 147.9 0.1 4.7e-43 147.7 0.1 1.0 1 0 0 1 1 1 1 PAC2 family Methyltr_RsmB-F PF01189.17 gi|257388869|ref|YP_003178642.1| - 2.1e-48 164.7 0.0 2.6e-48 164.3 0.0 1.1 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F Methyltr_RsmF_N PF17125.5 gi|257388869|ref|YP_003178642.1| - 6.2e-07 29.8 0.0 2.5e-06 27.9 0.0 2.0 2 0 0 2 2 2 1 N-terminal domain of 16S rRNA methyltransferase RsmF FtsJ PF01728.19 gi|257388869|ref|YP_003178642.1| - 0.00027 21.1 0.0 0.00044 20.4 0.0 1.2 1 0 0 1 1 1 1 FtsJ-like methyltransferase Methyltransf_31 PF13847.6 gi|257388869|ref|YP_003178642.1| - 0.0012 18.7 0.0 0.0026 17.5 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|257388869|ref|YP_003178642.1| - 0.058 14.1 0.4 0.2 12.4 0.1 2.1 3 0 0 3 3 3 0 Methyltransferase domain Methyltranf_PUA PF13636.6 gi|257388870|ref|YP_003178643.1| - 6e-11 42.1 0.0 9e-11 41.6 0.0 1.3 1 0 0 1 1 1 1 RNA-binding PUA-like domain of methyltransferase RsmF Cas_Cas6 PF01881.16 gi|257388871|ref|YP_003178644.1| - 2.8e-21 76.6 0.0 3.6e-21 76.2 0.0 1.1 1 0 0 1 1 1 1 CRISPR associated protein Cas6 Cas_TM1802 PF09484.10 gi|257388872|ref|YP_003178645.1| - 1.1e-24 87.2 0.0 3.8e-15 55.7 0.0 2.2 2 0 0 2 2 2 2 CRISPR-associated protein TM1802 (cas_TM1802) Cas_Cas7 PF05107.12 gi|257388873|ref|YP_003178646.1| - 1.5e-43 149.1 0.0 1.8e-43 148.9 0.0 1.1 1 0 0 1 1 1 1 CRISPR-associated protein Cas7 Cas_Cas5d PF09704.10 gi|257388874|ref|YP_003178647.1| - 6.9e-09 35.9 0.0 9.2e-09 35.5 0.0 1.2 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas5) HD_6 PF18019.1 gi|257388875|ref|YP_003178648.1| - 2.1e-08 34.5 0.1 4.1e-08 33.6 0.1 1.4 1 0 0 1 1 1 1 HD domain ResIII PF04851.15 gi|257388875|ref|YP_003178648.1| - 1.9e-07 31.2 0.0 3.3e-07 30.5 0.0 1.3 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|257388875|ref|YP_003178648.1| - 1.4e-06 28.2 0.0 5.1e-06 26.4 0.0 1.9 2 0 0 2 2 2 1 DEAD/DEAH box helicase DUF3731 PF12531.8 gi|257388875|ref|YP_003178648.1| - 0.0041 17.0 0.0 0.0073 16.2 0.0 1.3 1 0 0 1 1 1 1 DNA-K related protein HD PF01966.22 gi|257388875|ref|YP_003178648.1| - 0.022 15.0 0.0 0.069 13.4 0.0 1.8 1 0 0 1 1 1 0 HD domain Big_1 PF02369.16 gi|257388875|ref|YP_003178648.1| - 0.55 10.3 3.8 0.33 11.0 0.6 2.3 2 0 0 2 2 2 0 Bacterial Ig-like domain (group 1) Cas_Cas4 PF01930.17 gi|257388876|ref|YP_003178649.1| - 1.4e-43 148.8 0.0 1.6e-43 148.7 0.0 1.0 1 0 0 1 1 1 1 Domain of unknown function DUF83 PDDEXK_1 PF12705.7 gi|257388876|ref|YP_003178649.1| - 2.4e-06 27.7 0.0 2.8e-06 27.4 0.0 1.1 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily Cas_Cas1 PF01867.16 gi|257388877|ref|YP_003178650.1| - 2.4e-90 302.5 0.0 2.7e-90 302.3 0.0 1.0 1 0 0 1 1 1 1 CRISPR associated protein Cas1 CRISPR_Cas2 PF09827.9 gi|257388878|ref|YP_003178651.1| - 3.3e-15 56.0 0.1 4e-15 55.8 0.1 1.2 1 0 0 1 1 1 1 CRISPR associated protein Cas2 OrfB_IS605 PF01385.19 gi|257388879|ref|YP_003178652.1| - 2.2e-24 86.0 0.1 5.8e-24 84.6 0.0 1.7 2 0 0 2 2 2 1 Probable transposase OrfB_Zn_ribbon PF07282.11 gi|257388879|ref|YP_003178652.1| - 4.6e-21 74.5 1.5 5.4e-21 74.3 0.3 1.8 2 0 0 2 2 2 1 Putative transposase DNA-binding domain HTH_OrfB_IS605 PF12323.8 gi|257388879|ref|YP_003178652.1| - 1.8e-07 30.5 1.0 3.5e-07 29.6 1.0 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Clusterin PF01093.17 gi|257388879|ref|YP_003178652.1| - 0.037 13.1 0.3 0.067 12.2 0.0 1.5 2 0 0 2 2 2 0 Clusterin DZR PF12773.7 gi|257388879|ref|YP_003178652.1| - 0.2 11.7 1.5 0.43 10.7 1.5 1.6 1 0 0 1 1 1 0 Double zinc ribbon Zn-ribbon_8 PF09723.10 gi|257388879|ref|YP_003178652.1| - 0.2 11.8 5.9 0.7 10.1 0.9 2.5 1 1 1 2 2 2 0 Zinc ribbon domain Y1_Tnp PF01797.16 gi|257388880|ref|YP_003178653.1| - 3.5e-37 127.2 0.0 3.9e-37 127.0 0.0 1.0 1 0 0 1 1 1 1 Transposase IS200 like IQ_SEC7_PH PF16453.5 gi|257388880|ref|YP_003178653.1| - 0.01 15.8 0.0 0.017 15.1 0.0 1.4 1 1 0 1 1 1 0 PH domain Glyco_hydro_66 PF13199.6 gi|257388880|ref|YP_003178653.1| - 0.045 12.4 0.0 0.071 11.7 0.0 1.3 1 1 0 1 1 1 0 Glycosyl hydrolase family 66 DUF790 PF05626.11 gi|257388881|ref|YP_003178654.1| - 3e-133 444.3 0.1 9.8e-133 442.6 0.1 1.7 1 1 0 1 1 1 1 Protein of unknown function (DUF790) ResIII PF04851.15 gi|257388882|ref|YP_003178655.1| - 2.4e-25 89.5 0.0 2.2e-24 86.4 0.0 2.2 2 0 0 2 2 2 1 Type III restriction enzyme, res subunit ERCC3_RAD25_C PF16203.5 gi|257388882|ref|YP_003178655.1| - 2e-20 73.0 0.0 2.8e-20 72.6 0.0 1.2 1 0 0 1 1 1 1 ERCC3/RAD25/XPB C-terminal helicase XPB_DRD PF18458.1 gi|257388882|ref|YP_003178655.1| - 7e-18 64.3 1.1 2.3e-17 62.6 1.1 2.0 1 0 0 1 1 1 1 Xeroderma pigmentosum group B helicase damage recognition domain Helicase_C PF00271.31 gi|257388882|ref|YP_003178655.1| - 8.7e-16 58.3 0.0 6.8e-15 55.4 0.1 2.2 2 0 0 2 2 2 1 Helicase conserved C-terminal domain DEAD PF00270.29 gi|257388882|ref|YP_003178655.1| - 2.8e-08 33.8 0.0 1.3e-07 31.6 0.0 2.1 2 1 0 2 2 2 1 DEAD/DEAH box helicase SNF2_N PF00176.23 gi|257388882|ref|YP_003178655.1| - 4.7e-05 22.3 0.0 0.00098 17.9 0.0 2.3 1 1 1 2 2 2 1 SNF2 family N-terminal domain AAA_22 PF13401.6 gi|257388882|ref|YP_003178655.1| - 0.022 15.0 0.1 0.37 11.1 0.0 2.9 2 2 1 3 3 3 0 AAA domain Helicase_C_2 PF13307.6 gi|257388882|ref|YP_003178655.1| - 0.069 13.3 0.0 1.9 8.6 0.0 2.6 3 0 0 3 3 3 0 Helicase C-terminal domain Peptidase_S8 PF00082.22 gi|257388883|ref|YP_003178656.1| - 3.4e-46 157.9 5.2 3.4e-46 157.9 5.2 1.7 2 0 0 2 2 2 1 Subtilase family PKD PF00801.20 gi|257388883|ref|YP_003178656.1| - 1.2e-15 57.1 3.5 1.2e-15 57.1 3.5 3.0 3 0 0 3 3 3 1 PKD domain GrpE PF01025.19 gi|257388884|ref|YP_003178657.1| - 2.1e-39 134.8 9.7 2.3e-39 134.7 9.2 1.3 1 1 0 1 1 1 1 GrpE OmpH PF03938.14 gi|257388884|ref|YP_003178657.1| - 2.9e-05 24.4 3.0 6e-05 23.4 3.0 1.6 1 0 0 1 1 1 1 Outer membrane protein (OmpH-like) Med28 PF11594.8 gi|257388884|ref|YP_003178657.1| - 0.0014 18.7 1.6 0.0028 17.8 0.6 1.9 1 1 1 2 2 2 1 Mediator complex subunit 28 Fez1 PF06818.15 gi|257388884|ref|YP_003178657.1| - 0.0031 18.0 8.4 0.0031 18.0 8.4 1.5 1 1 0 1 1 1 1 Fez1 Surfac_D-trimer PF09006.11 gi|257388884|ref|YP_003178657.1| - 0.0056 16.5 0.8 3.8 7.5 0.4 2.5 1 1 1 2 2 2 2 Lung surfactant protein D coiled-coil trimerisation ATF7IP_BD PF16788.5 gi|257388884|ref|YP_003178657.1| - 0.018 15.2 0.8 0.024 14.7 0.8 1.2 1 0 0 1 1 1 0 ATF-interacting protein binding domain Med9 PF07544.13 gi|257388884|ref|YP_003178657.1| - 0.034 14.2 6.0 0.042 13.9 0.6 2.8 2 1 0 2 2 2 0 RNA polymerase II transcription mediator complex subunit 9 Spc7 PF08317.11 gi|257388884|ref|YP_003178657.1| - 0.039 12.8 9.9 0.054 12.4 9.9 1.3 1 0 0 1 1 1 0 Spc7 kinetochore protein Atg14 PF10186.9 gi|257388884|ref|YP_003178657.1| - 0.045 12.8 2.2 0.049 12.7 2.2 1.1 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 Phage_tail_NK PF16532.5 gi|257388884|ref|YP_003178657.1| - 0.062 12.9 0.1 0.1 12.2 0.1 1.2 1 0 0 1 1 1 0 Sf6-type phage tail needle knob or tip of some Caudovirales DUF148 PF02520.17 gi|257388884|ref|YP_003178657.1| - 0.084 13.0 3.0 0.19 11.8 2.4 1.8 1 1 0 1 1 1 0 Domain of unknown function DUF148 SpecificRecomb PF10136.9 gi|257388884|ref|YP_003178657.1| - 0.17 10.2 0.7 0.21 9.9 0.7 1.1 1 0 0 1 1 1 0 Site-specific recombinase Draxin PF15550.6 gi|257388884|ref|YP_003178657.1| - 0.2 11.5 5.5 0.21 11.4 5.5 1.1 1 0 0 1 1 1 0 Draxin Rb_C PF08934.10 gi|257388884|ref|YP_003178657.1| - 0.22 11.3 3.5 0.21 11.4 2.4 1.5 1 1 0 1 1 1 0 Rb C-terminal domain FAM76 PF16046.5 gi|257388884|ref|YP_003178657.1| - 0.32 10.3 8.4 0.38 10.1 8.4 1.1 1 0 0 1 1 1 0 FAM76 protein TPR_MLP1_2 PF07926.12 gi|257388884|ref|YP_003178657.1| - 0.34 11.0 13.4 0.62 10.1 12.9 1.8 1 1 0 1 1 1 0 TPR/MLP1/MLP2-like protein TarH PF02203.15 gi|257388884|ref|YP_003178657.1| - 0.43 10.5 4.6 6.5 6.6 4.5 2.4 1 1 2 3 3 3 0 Tar ligand binding domain homologue CLZ PF16526.5 gi|257388884|ref|YP_003178657.1| - 0.5 10.7 10.5 1.2 9.5 7.1 3.1 1 1 1 2 2 2 0 C-terminal leucine zipper domain of cyclic nucleotide-gated channels VitD-bind_III PF09164.10 gi|257388884|ref|YP_003178657.1| - 0.56 10.2 3.9 0.39 10.7 1.8 1.8 2 0 0 2 2 2 0 Vitamin D binding protein, domain III AHSP PF09236.10 gi|257388884|ref|YP_003178657.1| - 0.57 10.7 3.8 4.8 7.7 0.7 3.0 2 1 1 3 3 3 0 Alpha-haemoglobin stabilising protein GAT PF03127.14 gi|257388884|ref|YP_003178657.1| - 0.77 10.1 7.0 0.41 11.0 3.0 2.5 2 1 1 3 3 2 0 GAT domain DUF4407 PF14362.6 gi|257388884|ref|YP_003178657.1| - 0.79 9.0 10.5 1.1 8.6 10.5 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) TMPIT PF07851.13 gi|257388884|ref|YP_003178657.1| - 0.82 8.9 2.1 1.1 8.5 2.1 1.1 1 0 0 1 1 1 0 TMPIT-like protein CSN5_C PF18323.1 gi|257388884|ref|YP_003178657.1| - 1 10.3 5.8 0.18 12.8 0.3 2.2 2 0 0 2 2 2 0 Cop9 signalosome subunit 5 C-terminal domain Fmp27_WPPW PF10359.9 gi|257388884|ref|YP_003178657.1| - 1.5 7.6 8.6 0.42 9.4 5.9 1.4 1 1 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain UPF0242 PF06785.11 gi|257388884|ref|YP_003178657.1| - 2.3 8.3 11.5 3 7.9 11.5 1.3 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0242) N-terminus CENP-Q PF13094.6 gi|257388884|ref|YP_003178657.1| - 9 6.5 16.4 0.63 10.2 11.2 1.7 1 1 1 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit HSP70 PF00012.20 gi|257388885|ref|YP_003178658.1| - 3.2e-241 801.7 19.5 3.4e-239 795.0 19.5 2.0 1 1 0 1 1 1 1 Hsp70 protein MreB_Mbl PF06723.13 gi|257388885|ref|YP_003178658.1| - 2.5e-20 72.6 0.3 2.5e-20 72.6 0.3 2.1 2 0 0 2 2 2 1 MreB/Mbl protein FGGY_C PF02782.16 gi|257388885|ref|YP_003178658.1| - 0.0066 16.2 0.1 0.021 14.5 0.0 1.9 2 0 0 2 2 2 1 FGGY family of carbohydrate kinases, C-terminal domain StbA PF06406.11 gi|257388885|ref|YP_003178658.1| - 0.0099 15.1 0.0 0.039 13.2 0.0 2.0 2 0 0 2 2 2 1 StbA protein CobD_Cbib PF03186.13 gi|257388885|ref|YP_003178658.1| - 0.18 11.0 0.2 0.38 9.9 0.2 1.4 1 0 0 1 1 1 0 CobD/Cbib protein FIVAR PF07554.13 gi|257388885|ref|YP_003178658.1| - 0.61 10.9 4.6 5.7 7.8 4.5 2.8 2 1 0 2 2 2 0 FIVAR domain DUF4795 PF16043.5 gi|257388885|ref|YP_003178658.1| - 1.1 8.8 10.6 0.35 10.5 4.7 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4795) TerB PF05099.13 gi|257388886|ref|YP_003178659.1| - 0.055 13.4 0.0 0.066 13.2 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TerB Aldo_ket_red PF00248.21 gi|257388887|ref|YP_003178660.1| - 4e-57 193.6 0.1 1.2e-54 185.5 0.1 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family HTH_Tnp_1 PF01527.20 gi|257388887|ref|YP_003178660.1| - 0.073 13.4 0.1 3.1 8.2 0.1 2.5 2 0 0 2 2 2 0 Transposase Pilin_N PF07790.11 gi|257388888|ref|YP_003178661.1| - 8.9e-06 26.5 1.2 1.6e-05 25.7 1.0 1.5 1 1 0 1 1 1 1 Archaeal Type IV pilin, N-terminal DUF1521 PF07481.11 gi|257388888|ref|YP_003178661.1| - 0.031 14.3 0.2 0.031 14.3 0.2 1.7 2 0 0 2 2 2 0 Domain of Unknown Function (DUF1521) DnaJ_C PF01556.18 gi|257388889|ref|YP_003178662.1| - 9.5e-43 145.8 0.0 1.3e-42 145.4 0.0 1.2 1 0 0 1 1 1 1 DnaJ C terminal domain DnaJ PF00226.31 gi|257388889|ref|YP_003178662.1| - 2.1e-26 91.8 4.1 4.1e-26 90.9 4.1 1.5 1 0 0 1 1 1 1 DnaJ domain DnaJ_CXXCXGXG PF00684.19 gi|257388889|ref|YP_003178662.1| - 1.5e-13 50.9 16.2 3.1e-13 49.9 16.2 1.6 1 0 0 1 1 1 1 DnaJ central domain DUF5351 PF17302.2 gi|257388889|ref|YP_003178662.1| - 0.00092 19.3 21.7 0.84 9.9 0.5 4.5 4 0 0 4 4 4 4 Family of unknown function (DUF5351) Anti-TRAP PF15777.5 gi|257388889|ref|YP_003178662.1| - 0.015 15.2 14.9 0.026 14.5 4.8 2.6 1 1 1 2 2 2 0 Tryptophan RNA-binding attenuator protein inhibitory protein RPT PF13446.6 gi|257388889|ref|YP_003178662.1| - 0.027 14.4 0.1 0.055 13.4 0.1 1.5 1 0 0 1 1 1 0 A repeated domain in UCH-protein CPP1-like PF11833.8 gi|257388889|ref|YP_003178662.1| - 0.48 10.0 2.8 11 5.6 0.7 2.6 2 1 1 3 3 3 0 Protein CHAPERONE-LIKE PROTEIN OF POR1-like DZR PF12773.7 gi|257388889|ref|YP_003178662.1| - 0.78 9.8 13.7 2.5 8.2 13.9 1.7 1 1 0 1 1 1 0 Double zinc ribbon TackOD1 PF18551.1 gi|257388889|ref|YP_003178662.1| - 1.2 8.8 7.2 1.4 8.6 1.1 2.4 1 1 1 2 2 2 0 Thaumarchaeal output domain 1 HypA PF01155.19 gi|257388889|ref|YP_003178662.1| - 2.5 8.1 12.0 2.4 8.2 2.4 2.3 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA GRP PF07172.11 gi|257388889|ref|YP_003178662.1| - 5.7 7.7 24.2 1.3 9.7 18.8 2.5 2 0 0 2 2 2 0 Glycine rich protein family AMP-binding PF00501.28 gi|257388890|ref|YP_003178663.1| - 0.00096 17.9 0.0 0.15 10.6 0.0 2.2 2 0 0 2 2 2 2 AMP-binding enzyme DUF2975 PF11188.8 gi|257388891|ref|YP_003178664.1| - 2 8.3 4.9 2.4 8.1 4.9 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF2975) DUF5366 PF17328.2 gi|257388892|ref|YP_003178665.1| - 0.05 13.7 0.3 0.082 13.0 0.3 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5366) DUF3119 PF11317.8 gi|257388892|ref|YP_003178665.1| - 0.34 11.2 1.1 0.62 10.3 0.2 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF3119) Copper-bind PF00127.20 gi|257388893|ref|YP_003178666.1| - 1.2e-13 51.3 0.2 3.7e-13 49.7 0.2 1.8 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.6 gi|257388893|ref|YP_003178666.1| - 0.016 15.3 0.0 0.024 14.7 0.0 1.3 1 0 0 1 1 1 0 Cupredoxin-like domain Polyketide_cyc2 PF10604.9 gi|257388894|ref|YP_003178667.1| - 1.3e-15 57.9 1.4 1.7e-15 57.5 1.4 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc PF03364.20 gi|257388894|ref|YP_003178667.1| - 8.3e-10 39.0 0.1 1.6e-09 38.1 0.1 1.4 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport AHSA1 PF08327.11 gi|257388894|ref|YP_003178667.1| - 0.016 15.4 0.4 0.029 14.6 0.3 1.5 1 1 0 1 1 1 0 Activator of Hsp90 ATPase homolog 1-like protein DFP PF04127.15 gi|257388895|ref|YP_003178668.1| - 5.6e-47 160.0 3.2 3.4e-46 157.4 0.5 2.2 2 0 0 2 2 2 2 DNA / pantothenate metabolism flavoprotein Flavoprotein PF02441.19 gi|257388895|ref|YP_003178668.1| - 1.2e-32 112.8 0.3 1.9e-32 112.2 0.3 1.3 1 0 0 1 1 1 1 Flavoprotein MNHE PF01899.16 gi|257388896|ref|YP_003178669.1| - 4.1e-33 114.2 2.4 6.9e-33 113.5 2.4 1.3 1 0 0 1 1 1 1 Na+/H+ ion antiporter subunit Usp PF00582.26 gi|257388896|ref|YP_003178669.1| - 0.0033 18.0 2.9 0.012 16.1 2.0 2.4 2 1 0 2 2 2 1 Universal stress protein family MrpF_PhaF PF04066.13 gi|257388897|ref|YP_003178670.1| - 4.8e-18 65.3 5.2 4.8e-18 65.3 5.2 2.0 2 0 0 2 2 2 1 Multiple resistance and pH regulation protein F (MrpF / PhaF) 3Beta_HSD PF01073.19 gi|257388897|ref|YP_003178670.1| - 0.026 13.5 0.1 0.032 13.2 0.1 1.1 1 0 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family Viral_Beta_CD PF04530.12 gi|257388897|ref|YP_003178670.1| - 0.048 14.0 0.2 0.06 13.7 0.2 1.2 1 1 0 1 1 1 0 Viral Beta C/D like family PhaG_MnhG_YufB PF03334.14 gi|257388898|ref|YP_003178671.1| - 6.2e-27 93.7 9.4 8e-27 93.3 9.4 1.1 1 0 0 1 1 1 1 Na+/H+ antiporter subunit DUF2104 PF09877.9 gi|257388898|ref|YP_003178671.1| - 0.063 13.6 0.1 0.08 13.2 0.1 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2104) DUF4781 PF16013.5 gi|257388898|ref|YP_003178671.1| - 1.9 7.2 5.8 1.3 7.7 3.6 1.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4781) DUF4040 PF13244.6 gi|257388899|ref|YP_003178672.1| - 3.7e-18 65.4 10.8 3.7e-18 65.4 10.8 2.8 3 0 0 3 3 3 1 Domain of unknown function (DUF4040) Oxidored_q3 PF00499.20 gi|257388899|ref|YP_003178672.1| - 5.9e-07 29.3 3.5 8.2e-07 28.8 3.5 1.3 1 1 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DUF2178 PF09946.9 gi|257388899|ref|YP_003178672.1| - 0.016 15.3 3.9 0.016 15.3 3.9 2.6 2 1 0 3 3 3 0 Predicted membrane protein (DUF2178) MnhB PF04039.13 gi|257388900|ref|YP_003178673.1| - 1e-23 83.9 17.2 1.4e-23 83.5 17.2 1.2 1 0 0 1 1 1 1 Domain related to MnhB subunit of Na+/H+ antiporter Virul_fac_BrkB PF03631.15 gi|257388900|ref|YP_003178673.1| - 0.17 11.4 7.8 0.026 14.2 1.9 1.9 1 1 1 2 2 2 0 Virulence factor BrkB Oxidored_q2 PF00420.24 gi|257388901|ref|YP_003178674.1| - 8.5e-26 89.6 2.8 9.9e-26 89.4 2.8 1.0 1 0 0 1 1 1 1 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Proton_antipo_M PF00361.20 gi|257388902|ref|YP_003178675.1| - 8.2e-64 215.6 23.1 8.2e-64 215.6 23.1 2.3 1 1 1 2 2 2 2 Proton-conducting membrane transporter NADHdeh_related PF10125.9 gi|257388902|ref|YP_003178675.1| - 3.5e-08 33.1 9.9 3.5e-08 33.1 9.9 2.8 2 1 0 2 2 2 1 NADH dehydrogenase I, subunit N related protein Proton_antipo_N PF00662.20 gi|257388902|ref|YP_003178675.1| - 0.023 14.8 0.1 0.023 14.8 0.1 3.9 3 0 0 3 3 3 0 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus RskA PF10099.9 gi|257388902|ref|YP_003178675.1| - 0.14 12.4 0.3 0.14 12.4 0.3 4.0 3 1 0 3 3 3 0 Anti-sigma-K factor rskA Proton_antipo_M PF00361.20 gi|257388903|ref|YP_003178676.1| - 5.5e-62 209.6 14.0 9.4e-62 208.9 14.0 1.4 1 0 0 1 1 1 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|257388903|ref|YP_003178676.1| - 0.00011 22.2 0.2 0.00011 22.2 0.2 2.3 2 0 0 2 2 2 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Spo7 PF03907.13 gi|257388903|ref|YP_003178676.1| - 0.098 12.1 0.6 0.2 11.1 0.6 1.4 1 0 0 1 1 1 0 Spo7-like protein PspC PF04024.12 gi|257388903|ref|YP_003178676.1| - 0.57 10.0 3.9 2.8 7.8 3.9 2.4 1 1 0 1 1 1 0 PspC domain Deltameth_res PF16020.5 gi|257388903|ref|YP_003178676.1| - 5.9 6.9 5.4 8.8 6.3 0.6 3.1 2 0 0 2 2 2 0 Deltamethrin resistance Proton_antipo_M PF00361.20 gi|257388904|ref|YP_003178677.1| - 1.8e-41 142.3 13.3 1.8e-41 142.3 13.3 1.8 2 0 0 2 2 2 1 Proton-conducting membrane transporter NDUF_C2 PF06374.11 gi|257388904|ref|YP_003178677.1| - 1 9.6 2.7 7 6.8 0.5 2.8 3 0 0 3 3 3 0 NADH-ubiquinone oxidoreductase subunit b14.5b (NDUFC2) Pilin_N PF07790.11 gi|257388905|ref|YP_003178678.1| - 1.1e-26 93.5 2.3 1.4e-26 93.2 1.1 1.7 1 1 1 2 2 2 1 Archaeal Type IV pilin, N-terminal TFIIE_beta PF02186.15 gi|257388906|ref|YP_003178679.1| - 0.026 14.8 0.0 0.052 13.8 0.0 1.5 1 0 0 1 1 1 0 TFIIE beta subunit core domain HTH_20 PF12840.7 gi|257388906|ref|YP_003178679.1| - 0.12 12.4 0.0 0.4 10.8 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain DUF4229 PF14012.6 gi|257388906|ref|YP_003178679.1| - 0.25 11.5 3.6 0.42 10.7 3.6 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF4229) Pilin_N PF07790.11 gi|257388907|ref|YP_003178680.1| - 3.8e-26 91.8 1.9 8e-26 90.8 1.9 1.5 1 0 0 1 1 1 1 Archaeal Type IV pilin, N-terminal Pribosyltran PF00156.27 gi|257388910|ref|YP_003178683.1| - 7e-13 48.4 6.1 8.8e-13 48.1 5.2 1.5 1 1 1 2 2 2 1 Phosphoribosyl transferase domain UPRTase PF14681.6 gi|257388910|ref|YP_003178683.1| - 0.0013 18.2 0.0 0.0019 17.7 0.0 1.2 1 0 0 1 1 1 1 Uracil phosphoribosyltransferase GtrA PF04138.14 gi|257388911|ref|YP_003178684.1| - 8.3e-21 74.4 3.9 1e-20 74.1 3.9 1.1 1 0 0 1 1 1 1 GtrA-like protein Glycos_transf_2 PF00535.26 gi|257388912|ref|YP_003178685.1| - 5.8e-07 29.5 0.1 8e-07 29.0 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 MAAL_C PF07476.11 gi|257388912|ref|YP_003178685.1| - 0.096 11.8 0.0 0.63 9.1 0.0 1.9 1 1 0 1 1 1 0 Methylaspartate ammonia-lyase C-terminus DUF2298 PF10060.9 gi|257388913|ref|YP_003178686.1| - 6.6e-147 490.2 27.0 1.1e-146 489.5 27.0 1.3 1 0 0 1 1 1 1 Uncharacterized membrane protein (DUF2298) RVT_3 PF13456.6 gi|257388914|ref|YP_003178687.1| - 7.1e-11 42.0 0.0 9.7e-11 41.6 0.0 1.2 1 0 0 1 1 1 1 Reverse transcriptase-like RNase_H PF00075.24 gi|257388914|ref|YP_003178687.1| - 4.1e-10 40.0 0.0 1.2e-09 38.5 0.0 1.8 2 0 0 2 2 2 1 RNase H Cytochrom_C_2 PF01322.20 gi|257388914|ref|YP_003178687.1| - 0.14 13.1 0.0 7.2 7.5 0.0 2.1 2 0 0 2 2 2 0 Cytochrome C' EFP_N PF08207.12 gi|257388915|ref|YP_003178688.1| - 0.08 13.0 0.0 0.13 12.3 0.0 1.3 1 0 0 1 1 1 0 Elongation factor P (EF-P) KOW-like domain Internalin_N PF12354.8 gi|257388916|ref|YP_003178689.1| - 0.88 9.7 2.7 1.3 9.2 2.7 1.4 1 1 0 1 1 1 0 Bacterial adhesion/invasion protein N terminal DUF2905 PF11146.8 gi|257388916|ref|YP_003178689.1| - 3.3 8.0 12.4 2.3 8.5 8.4 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2905) DUF2207 PF09972.9 gi|257388916|ref|YP_003178689.1| - 3.7 6.2 4.2 4 6.1 4.2 1.0 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) Ribosomal_L44 PF00935.19 gi|257388917|ref|YP_003178690.1| - 3.9e-26 91.3 1.2 4.8e-26 91.1 1.2 1.1 1 0 0 1 1 1 1 Ribosomal protein L44 zf-ribbon_3 PF13248.6 gi|257388917|ref|YP_003178690.1| - 6.9e-05 22.1 0.7 0.1 12.1 0.0 2.2 2 0 0 2 2 2 2 zinc-ribbon domain zinc_ribbon_10 PF10058.9 gi|257388917|ref|YP_003178690.1| - 0.0044 16.7 1.0 1.1 9.0 0.0 2.2 2 0 0 2 2 2 2 Predicted integral membrane zinc-ribbon metal-binding protein Zn-ribbon_8 PF09723.10 gi|257388917|ref|YP_003178690.1| - 0.0073 16.4 1.6 2.6 8.2 0.2 2.4 2 0 0 2 2 2 2 Zinc ribbon domain Zn_ribbon_SprT PF17283.2 gi|257388917|ref|YP_003178690.1| - 0.013 15.4 5.0 0.36 10.8 0.5 2.3 2 0 0 2 2 2 0 SprT-like zinc ribbon domain Zn_Tnp_IS1595 PF12760.7 gi|257388917|ref|YP_003178690.1| - 0.072 13.1 2.1 6.9 6.7 0.1 2.2 2 0 0 2 2 2 0 Transposase zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|257388917|ref|YP_003178690.1| - 0.081 12.7 4.5 1.4 8.7 0.7 2.3 2 0 0 2 2 2 0 zinc-ribbon domain zf-LITAF-like PF10601.9 gi|257388917|ref|YP_003178690.1| - 0.11 12.8 2.3 0.37 11.1 0.1 2.0 2 0 0 2 2 2 0 LITAF-like zinc ribbon domain zf-Mss51 PF13824.6 gi|257388917|ref|YP_003178690.1| - 0.17 12.0 6.2 0.28 11.3 6.2 1.4 1 1 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Rubredoxin_2 PF18073.1 gi|257388917|ref|YP_003178690.1| - 0.86 9.4 6.7 1.2 8.9 0.5 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain Ribosomal_S27e PF01667.17 gi|257388918|ref|YP_003178691.1| - 3.1e-22 78.0 0.5 3.3e-22 78.0 0.5 1.0 1 0 0 1 1 1 1 Ribosomal protein S27 TF_Zn_Ribbon PF08271.12 gi|257388918|ref|YP_003178691.1| - 0.00041 19.8 1.0 0.00063 19.2 1.0 1.3 1 0 0 1 1 1 1 TFIIB zinc-binding Zn-ribbon_8 PF09723.10 gi|257388918|ref|YP_003178691.1| - 0.0048 17.0 2.0 0.0072 16.4 2.0 1.3 1 0 0 1 1 1 1 Zinc ribbon domain OrfB_Zn_ribbon PF07282.11 gi|257388918|ref|YP_003178691.1| - 0.006 16.5 0.1 0.0076 16.2 0.1 1.3 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Zn_Tnp_IS1595 PF12760.7 gi|257388918|ref|YP_003178691.1| - 0.013 15.5 0.2 0.017 15.1 0.2 1.2 1 0 0 1 1 1 0 Transposase zinc-ribbon domain HypA PF01155.19 gi|257388918|ref|YP_003178691.1| - 0.019 15.0 0.5 0.022 14.8 0.5 1.2 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA CpXC PF14353.6 gi|257388918|ref|YP_003178691.1| - 0.03 14.4 1.3 1 9.4 0.1 2.1 1 1 1 2 2 2 0 CpXC protein eIF-5_eIF-2B PF01873.17 gi|257388918|ref|YP_003178691.1| - 0.044 13.7 1.4 0.057 13.3 1.4 1.1 1 0 0 1 1 1 0 Domain found in IF2B/IF5 zinc_ribbon_4 PF13717.6 gi|257388918|ref|YP_003178691.1| - 0.046 13.7 3.6 0.84 9.6 3.7 2.2 1 1 0 1 1 1 0 zinc-ribbon domain TFIIS_C PF01096.18 gi|257388918|ref|YP_003178691.1| - 0.056 13.3 2.8 2.7 7.9 2.8 2.1 1 1 0 1 1 1 0 Transcription factor S-II (TFIIS) DUF3797 PF12677.7 gi|257388918|ref|YP_003178691.1| - 0.095 12.6 1.5 1.5 8.7 0.3 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF3797) EIF_2_alpha PF07541.12 gi|257388919|ref|YP_003178692.1| - 9.6e-28 96.6 0.0 1.6e-27 95.9 0.0 1.4 1 0 0 1 1 1 1 Eukaryotic translation initiation factor 2 alpha subunit S1 PF00575.23 gi|257388919|ref|YP_003178692.1| - 3.2e-13 49.8 2.8 3.9e-13 49.6 0.9 2.0 2 0 0 2 2 2 1 S1 RNA binding domain Nop10p PF04135.12 gi|257388920|ref|YP_003178693.1| - 1.3e-22 79.5 0.9 1.5e-22 79.4 0.9 1.0 1 0 0 1 1 1 1 Nucleolar RNA-binding protein, Nop10p family PAC2 PF09754.9 gi|257388921|ref|YP_003178694.1| - 1.6e-54 185.1 0.2 1.9e-54 184.9 0.2 1.0 1 0 0 1 1 1 1 PAC2 family 5_3_exonuc PF01367.20 gi|257388921|ref|YP_003178694.1| - 0.064 13.9 0.4 3.7 8.2 0.0 3.2 3 1 0 3 3 3 0 5'-3' exonuclease, C-terminal SAM fold NAD_binding_10 PF13460.6 gi|257388921|ref|YP_003178694.1| - 0.085 12.7 0.0 0.13 12.2 0.0 1.3 1 0 0 1 1 1 0 NAD(P)H-binding DnaJ PF00226.31 gi|257388922|ref|YP_003178695.1| - 5.6e-09 36.0 0.0 1.1e-08 35.1 0.0 1.5 1 0 0 1 1 1 1 DnaJ domain BphX PF06139.12 gi|257388922|ref|YP_003178695.1| - 0.15 12.0 1.2 0.24 11.3 1.2 1.2 1 0 0 1 1 1 0 BphX-like PALP PF00291.25 gi|257388923|ref|YP_003178696.1| - 3.1e-48 164.7 10.8 3.8e-48 164.4 10.8 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme Zn-ribbon_8 PF09723.10 gi|257388923|ref|YP_003178696.1| - 0.0073 16.4 1.3 0.0073 16.4 1.3 2.1 2 0 0 2 2 2 1 Zinc ribbon domain HypA PF01155.19 gi|257388923|ref|YP_003178696.1| - 0.015 15.3 0.3 0.033 14.2 0.2 1.6 2 0 0 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA TF_Zn_Ribbon PF08271.12 gi|257388923|ref|YP_003178696.1| - 0.021 14.4 0.6 0.045 13.3 0.6 1.6 1 0 0 1 1 1 0 TFIIB zinc-binding DUF1272 PF06906.11 gi|257388923|ref|YP_003178696.1| - 0.062 13.4 0.6 0.14 12.3 0.6 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF1272) Anti-TRAP PF15777.5 gi|257388923|ref|YP_003178696.1| - 0.2 11.7 0.6 0.54 10.3 0.1 2.0 2 0 0 2 2 2 0 Tryptophan RNA-binding attenuator protein inhibitory protein MIX PF18529.1 gi|257388923|ref|YP_003178696.1| - 0.2 11.3 0.1 0.4 10.4 0.1 1.4 1 0 0 1 1 1 0 Mitochondrial membrane-anchored proteins Amino_oxidase PF01593.24 gi|257388924|ref|YP_003178697.1| - 8.9e-40 137.3 2.0 1.6e-39 136.5 2.0 1.4 1 1 0 1 1 1 1 Flavin containing amine oxidoreductase NAD_binding_8 PF13450.6 gi|257388924|ref|YP_003178697.1| - 1.6e-16 60.3 0.2 5.3e-16 58.6 0.2 2.0 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.24 gi|257388924|ref|YP_003178697.1| - 4.5e-16 59.4 2.8 3.3e-07 30.2 0.1 2.1 2 0 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|257388924|ref|YP_003178697.1| - 7.8e-11 41.7 3.6 4.3e-07 29.5 0.3 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|257388924|ref|YP_003178697.1| - 2.5e-08 33.0 2.3 6.3e-06 25.2 0.2 2.1 2 0 0 2 2 2 2 HI0933-like protein Pyr_redox PF00070.27 gi|257388924|ref|YP_003178697.1| - 3.1e-08 34.0 1.0 7.6e-05 23.2 0.4 2.4 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|257388924|ref|YP_003178697.1| - 6e-08 32.4 1.8 6e-08 32.4 1.8 1.8 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.24 gi|257388924|ref|YP_003178697.1| - 3.8e-07 29.5 5.5 4.7e-07 29.2 1.3 2.1 2 0 0 2 2 2 1 FAD binding domain FAD_binding_3 PF01494.19 gi|257388924|ref|YP_003178697.1| - 2e-06 27.3 2.9 3e-06 26.7 1.0 2.0 2 0 0 2 2 2 1 FAD binding domain GIDA PF01134.22 gi|257388924|ref|YP_003178697.1| - 3.7e-06 26.3 0.0 5.6e-06 25.7 0.0 1.3 1 0 0 1 1 1 1 Glucose inhibited division protein A Thi4 PF01946.17 gi|257388924|ref|YP_003178697.1| - 2.5e-05 23.6 0.3 4.9e-05 22.7 0.3 1.4 1 0 0 1 1 1 1 Thi4 family AlaDh_PNT_C PF01262.21 gi|257388924|ref|YP_003178697.1| - 0.00018 20.9 0.4 0.00033 20.0 0.4 1.4 1 0 0 1 1 1 1 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_9 PF13454.6 gi|257388924|ref|YP_003178697.1| - 0.0012 18.8 4.5 0.016 15.2 0.3 2.4 2 0 0 2 2 2 1 FAD-NAD(P)-binding Pyr_redox_3 PF13738.6 gi|257388924|ref|YP_003178697.1| - 0.0027 17.0 0.2 0.051 12.8 0.1 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Lycopene_cycl PF05834.12 gi|257388924|ref|YP_003178697.1| - 0.01 14.9 0.4 0.01 14.9 0.4 1.8 2 0 0 2 2 2 0 Lycopene cyclase protein Trp_halogenase PF04820.14 gi|257388924|ref|YP_003178697.1| - 0.039 12.8 0.4 0.039 12.8 0.4 1.6 2 0 0 2 2 2 0 Tryptophan halogenase FMO-like PF00743.19 gi|257388924|ref|YP_003178697.1| - 0.085 11.3 0.0 0.11 10.8 0.0 1.1 1 0 0 1 1 1 0 Flavin-binding monooxygenase-like NAD_binding_7 PF13241.6 gi|257388924|ref|YP_003178697.1| - 0.09 13.2 0.2 0.26 11.7 0.1 1.8 2 0 0 2 2 2 0 Putative NAD(P)-binding MCRA PF06100.11 gi|257388924|ref|YP_003178697.1| - 0.19 10.5 0.0 0.26 10.0 0.0 1.2 1 0 0 1 1 1 0 MCRA family 3HCDH_N PF02737.18 gi|257388924|ref|YP_003178697.1| - 0.77 9.6 3.0 0.3 11.0 0.3 1.7 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain NTP_transferase PF00483.23 gi|257388925|ref|YP_003178698.1| - 3.5e-37 128.3 0.0 4.7e-37 127.9 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.7 gi|257388925|ref|YP_003178698.1| - 1.1e-10 42.1 0.0 1.3e-10 41.9 0.0 1.3 1 1 0 1 1 1 1 MobA-like NTP transferase domain Glyoxalase_4 PF13669.6 gi|257388926|ref|YP_003178699.1| - 6.7e-15 55.3 0.2 8e-15 55.1 0.2 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.6 gi|257388926|ref|YP_003178699.1| - 8.2e-09 35.8 2.2 9.9e-09 35.5 2.2 1.2 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.25 gi|257388926|ref|YP_003178699.1| - 6.2e-08 32.9 0.3 7.3e-08 32.7 0.3 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_6 PF18029.1 gi|257388926|ref|YP_003178699.1| - 0.00013 22.7 0.9 0.00018 22.3 0.9 1.2 1 0 0 1 1 1 1 Glyoxalase-like domain MM_CoA_mutase PF01642.22 gi|257388928|ref|YP_003178701.1| - 7e-223 740.8 0.8 8.6e-223 740.5 0.8 1.0 1 0 0 1 1 1 1 Methylmalonyl-CoA mutase Lactamase_B_2 PF12706.7 gi|257388929|ref|YP_003178702.1| - 2e-06 27.4 0.3 4.2e-06 26.4 0.3 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B PF00753.27 gi|257388929|ref|YP_003178702.1| - 2.6e-06 27.6 5.7 1.2e-05 25.5 5.7 2.1 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Cas_Cas02710 PF09670.10 gi|257388930|ref|YP_003178703.1| - 0.00028 19.8 0.0 0.00035 19.5 0.0 1.1 1 0 0 1 1 1 1 CRISPR-associated protein (Cas_Cas02710) DUF1887 PF09002.11 gi|257388930|ref|YP_003178703.1| - 0.019 13.6 0.0 0.026 13.2 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF1887) HTH_27 PF13463.6 gi|257388930|ref|YP_003178703.1| - 0.047 14.2 0.0 0.4 11.2 0.1 2.2 2 0 0 2 2 2 0 Winged helix DNA-binding domain DEAD_assoc PF08494.11 gi|257388930|ref|YP_003178703.1| - 0.053 13.3 0.0 0.084 12.7 0.0 1.3 1 0 0 1 1 1 0 DEAD/H associated DUF4364 PF14277.6 gi|257388930|ref|YP_003178703.1| - 0.063 13.0 0.0 0.095 12.4 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) SHMT PF00464.19 gi|257388931|ref|YP_003178704.1| - 2.1e-143 477.8 0.0 2.4e-143 477.5 0.0 1.0 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Beta_elim_lyase PF01212.21 gi|257388931|ref|YP_003178704.1| - 1.7e-05 24.2 0.2 0.001 18.4 0.2 2.2 1 1 0 1 1 1 1 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|257388931|ref|YP_003178704.1| - 0.0025 17.2 0.1 0.0039 16.6 0.1 1.3 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family Acetyltransf_1 PF00583.25 gi|257388932|ref|YP_003178705.1| - 1.1e-07 32.0 0.1 1.9e-07 31.3 0.1 1.4 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_7 PF13508.7 gi|257388932|ref|YP_003178705.1| - 0.0007 20.0 0.0 0.00098 19.5 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|257388932|ref|YP_003178705.1| - 0.001 19.0 0.0 0.0014 18.5 0.0 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|257388932|ref|YP_003178705.1| - 0.0012 19.0 0.0 0.002 18.2 0.0 1.4 1 0 0 1 1 1 1 GCN5-related N-acetyl-transferase Acetyltransf_3 PF13302.7 gi|257388932|ref|YP_003178705.1| - 0.0082 16.8 0.1 0.012 16.3 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain DNA_pol_B PF00136.21 gi|257388933|ref|YP_003178706.1| - 1.3e-40 139.5 0.0 4.8e-23 81.6 0.0 2.2 2 0 0 2 2 2 2 DNA polymerase family B DNA_pol_B_exo1 PF03104.19 gi|257388933|ref|YP_003178706.1| - 1.7e-26 93.1 0.0 3.5e-26 92.1 0.0 1.6 1 0 0 1 1 1 1 DNA polymerase family B, exonuclease domain Hint_2 PF13403.6 gi|257388933|ref|YP_003178706.1| - 8.3e-07 29.4 0.0 4.1e-06 27.2 0.0 2.0 1 1 0 1 1 1 1 Hint domain Hint PF01079.20 gi|257388933|ref|YP_003178706.1| - 1.4e-06 28.0 0.0 2.4e-06 27.2 0.0 1.3 1 0 0 1 1 1 1 Hint module LAGLIDADG_3 PF14528.6 gi|257388933|ref|YP_003178706.1| - 9.5e-05 22.6 0.1 0.00049 20.4 0.0 2.1 2 0 0 2 2 2 1 LAGLIDADG-like domain Intein_splicing PF14890.6 gi|257388933|ref|YP_003178706.1| - 0.0002 21.3 0.0 0.0015 18.4 0.0 2.5 3 1 0 3 3 3 1 Intein splicing domain Asp-Al_Ex PF06826.12 gi|257388935|ref|YP_003178708.1| - 0.028 14.2 0.2 0.038 13.8 0.2 1.1 1 0 0 1 1 1 0 Predicted Permease Membrane Region AAA_23 PF13476.6 gi|257388937|ref|YP_003178710.1| - 2.6e-24 86.9 0.0 2.6e-24 86.9 0.0 6.2 2 1 1 3 3 2 1 AAA domain AAA_15 PF13175.6 gi|257388937|ref|YP_003178710.1| - 1.7e-10 41.2 1.2 1.7e-10 41.2 1.2 3.6 2 2 0 2 2 1 1 AAA ATPase domain SMC_N PF02463.19 gi|257388937|ref|YP_003178710.1| - 4.5e-10 39.3 49.0 4.1e-09 36.2 49.0 2.3 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|257388937|ref|YP_003178710.1| - 7.7e-07 29.2 0.8 3.1e-05 23.9 0.2 3.8 4 1 1 5 5 5 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|257388937|ref|YP_003178710.1| - 4e-06 26.5 0.0 7.2e-06 25.7 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_13 PF13166.6 gi|257388937|ref|YP_003178710.1| - 3.3e-05 22.8 63.0 0.0086 14.8 7.8 5.2 2 1 3 5 5 5 3 AAA domain Atg14 PF10186.9 gi|257388937|ref|YP_003178710.1| - 9.6e-05 21.6 78.9 0.02 14.0 14.9 5.9 2 2 3 5 5 5 3 Vacuolar sorting 38 and autophagy-related subunit 14 Spc7 PF08317.11 gi|257388937|ref|YP_003178710.1| - 0.00014 20.9 105.7 0.023 13.6 9.2 6.7 1 1 6 7 7 7 6 Spc7 kinetochore protein AAA_27 PF13514.6 gi|257388937|ref|YP_003178710.1| - 0.00023 20.8 0.0 0.00023 20.8 0.0 6.3 4 2 3 7 7 6 2 AAA domain NPV_P10 PF05531.12 gi|257388937|ref|YP_003178710.1| - 0.13 12.8 27.9 0.74 10.3 0.3 7.0 4 3 2 6 6 6 0 Nucleopolyhedrovirus P10 protein ABC_tran PF00005.27 gi|257388937|ref|YP_003178710.1| - 0.56 10.7 0.0 0.56 10.7 0.0 5.1 2 1 1 3 3 2 0 ABC transporter MukB PF04310.12 gi|257388937|ref|YP_003178710.1| - 0.6 9.9 0.0 0.6 9.9 0.0 3.6 4 1 1 5 5 5 0 MukB N-terminal AAA_33 PF13671.6 gi|257388937|ref|YP_003178710.1| - 1 9.5 0.0 1 9.5 0.0 5.1 4 2 1 5 5 3 0 AAA domain EzrA PF06160.12 gi|257388937|ref|YP_003178710.1| - 4.3 5.4 73.6 1.8 6.6 12.1 5.1 1 1 3 4 4 4 0 Septation ring formation regulator, EzrA DUF948 PF06103.11 gi|257388937|ref|YP_003178710.1| - 4.8 7.5 29.8 8.2 6.8 1.0 6.8 5 2 2 7 7 7 0 Bacterial protein of unknown function (DUF948) Laminin_II PF06009.12 gi|257388937|ref|YP_003178710.1| - 4.9 7.2 53.8 0.72 9.9 4.4 7.1 2 2 5 7 7 7 0 Laminin Domain II RPW8 PF05659.11 gi|257388937|ref|YP_003178710.1| - 4.9 6.8 28.0 0.98 9.1 0.6 6.1 4 2 0 6 6 6 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 DASH_Dam1 PF08653.10 gi|257388937|ref|YP_003178710.1| - 7.3 6.5 8.1 27 4.6 0.1 4.7 5 0 0 5 5 4 0 DASH complex subunit Dam1 DUF2284 PF10050.9 gi|257388937|ref|YP_003178710.1| - 7.9 6.2 7.0 1.4 8.6 1.9 2.5 2 1 0 2 2 2 0 Predicted metal-binding protein (DUF2284) Metallophos_2 PF12850.7 gi|257388938|ref|YP_003178711.1| - 5.1e-11 43.0 0.4 5.1e-11 43.0 0.4 1.7 2 0 0 2 2 2 1 Calcineurin-like phosphoesterase superfamily domain Metallophos PF00149.28 gi|257388938|ref|YP_003178711.1| - 5.2e-11 43.4 1.1 8e-11 42.8 1.1 1.4 1 0 0 1 1 1 1 Calcineurin-like phosphoesterase HTH_24 PF13412.6 gi|257388940|ref|YP_003178713.1| - 2.5e-07 30.2 0.0 3.7e-07 29.6 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|257388940|ref|YP_003178713.1| - 1.5e-05 24.7 0.1 2e-05 24.4 0.1 1.3 1 0 0 1 1 1 1 MarR family TFIIE_alpha PF02002.17 gi|257388940|ref|YP_003178713.1| - 0.0002 21.1 0.0 0.00024 20.9 0.0 1.1 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_20 PF12840.7 gi|257388940|ref|YP_003178713.1| - 0.00044 20.2 0.4 0.0012 18.8 0.1 1.9 2 1 0 2 2 2 1 Helix-turn-helix domain GntR PF00392.21 gi|257388940|ref|YP_003178713.1| - 0.00078 19.1 0.1 0.0012 18.4 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family TrmB PF01978.19 gi|257388940|ref|YP_003178713.1| - 0.0012 18.7 0.1 0.0015 18.3 0.1 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|257388940|ref|YP_003178713.1| - 0.0065 16.4 0.0 0.01 15.8 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|257388940|ref|YP_003178713.1| - 0.0082 16.6 0.0 0.011 16.2 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain Replic_Relax PF13814.6 gi|257388940|ref|YP_003178713.1| - 0.017 15.2 0.1 0.022 14.8 0.1 1.1 1 0 0 1 1 1 0 Replication-relaxation HTH_IclR PF09339.10 gi|257388940|ref|YP_003178713.1| - 0.023 14.5 0.2 0.038 13.8 0.2 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_5 PF01022.20 gi|257388940|ref|YP_003178713.1| - 0.027 14.4 0.0 0.038 13.9 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|257388940|ref|YP_003178713.1| - 0.035 14.0 0.0 0.05 13.6 0.0 1.2 1 0 0 1 1 1 0 HTH domain HTH_28 PF13518.6 gi|257388940|ref|YP_003178713.1| - 0.065 13.4 0.0 0.084 13.0 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain PaaX PF07848.12 gi|257388940|ref|YP_003178713.1| - 0.075 13.3 0.1 0.1 12.9 0.1 1.3 1 0 0 1 1 1 0 PaaX-like protein HTH_54 PF18607.1 gi|257388940|ref|YP_003178713.1| - 0.084 12.9 0.0 0.098 12.7 0.0 1.1 1 0 0 1 1 1 0 ParA helix turn helix domain HTH_AsnC-type PF13404.6 gi|257388940|ref|YP_003178713.1| - 0.12 12.2 0.1 0.29 11.0 0.1 1.6 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain AAA PF00004.29 gi|257388941|ref|YP_003178714.1| - 7.5e-44 149.4 0.9 1.5e-43 148.4 0.1 2.0 2 0 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) AAA_lid_3 PF17862.1 gi|257388941|ref|YP_003178714.1| - 5.8e-11 42.0 1.0 1.8e-10 40.4 1.0 1.9 1 0 0 1 1 1 1 AAA+ lid domain AAA_2 PF07724.14 gi|257388941|ref|YP_003178714.1| - 8.6e-10 39.0 0.4 4.6e-09 36.6 0.0 2.4 2 0 0 2 2 2 1 AAA domain (Cdc48 subfamily) AAA_16 PF13191.6 gi|257388941|ref|YP_003178714.1| - 3.3e-07 30.9 1.6 0.00023 21.6 0.0 3.2 2 1 1 3 3 3 1 AAA ATPase domain RuvB_N PF05496.12 gi|257388941|ref|YP_003178714.1| - 1.6e-06 27.9 0.0 3.9e-06 26.7 0.0 1.6 2 0 0 2 2 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_5 PF07728.14 gi|257388941|ref|YP_003178714.1| - 6.2e-06 26.2 0.4 6.8e-05 22.9 0.4 2.5 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.6 gi|257388941|ref|YP_003178714.1| - 3.4e-05 24.1 2.7 0.00042 20.6 0.0 2.9 2 2 1 3 3 2 1 AAA domain GrpE PF01025.19 gi|257388941|ref|YP_003178714.1| - 5.3e-05 22.9 7.0 0.00015 21.5 7.0 1.8 1 0 0 1 1 1 1 GrpE AAA_17 PF13207.6 gi|257388941|ref|YP_003178714.1| - 0.00012 22.5 3.6 0.051 14.0 0.0 2.7 2 1 0 2 2 2 2 AAA domain AAA_33 PF13671.6 gi|257388941|ref|YP_003178714.1| - 0.00044 20.4 0.1 0.0021 18.2 0.0 2.2 2 1 0 2 2 2 1 AAA domain AAA_14 PF13173.6 gi|257388941|ref|YP_003178714.1| - 0.00067 19.7 0.1 0.0033 17.5 0.0 2.0 2 1 0 2 2 2 1 AAA domain TIP49 PF06068.13 gi|257388941|ref|YP_003178714.1| - 0.00083 18.6 0.3 0.0021 17.3 0.0 1.8 2 0 0 2 2 2 1 TIP49 P-loop domain DUF815 PF05673.13 gi|257388941|ref|YP_003178714.1| - 0.0015 17.8 0.0 0.0033 16.6 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_18 PF13238.6 gi|257388941|ref|YP_003178714.1| - 0.0022 18.6 2.8 0.021 15.4 0.0 2.7 2 1 0 2 2 2 1 AAA domain Mg_chelatase PF01078.21 gi|257388941|ref|YP_003178714.1| - 0.0029 17.0 0.2 0.0072 15.7 0.2 1.7 1 1 0 1 1 1 1 Magnesium chelatase, subunit ChlI Prot_ATP_ID_OB PF16450.5 gi|257388941|ref|YP_003178714.1| - 0.0039 17.1 0.9 0.0068 16.3 0.2 1.8 2 0 0 2 2 1 1 Proteasomal ATPase OB C-terminal domain IstB_IS21 PF01695.17 gi|257388941|ref|YP_003178714.1| - 0.0055 16.5 0.0 0.014 15.2 0.0 1.7 1 0 0 1 1 1 1 IstB-like ATP binding protein Sigma54_activat PF00158.26 gi|257388941|ref|YP_003178714.1| - 0.0063 16.2 0.1 0.047 13.4 0.0 2.4 2 1 0 2 2 2 1 Sigma-54 interaction domain NACHT PF05729.12 gi|257388941|ref|YP_003178714.1| - 0.0071 16.3 1.2 0.055 13.4 0.0 2.5 2 1 0 3 3 2 1 NACHT domain Fmp27_WPPW PF10359.9 gi|257388941|ref|YP_003178714.1| - 0.0076 15.2 5.1 0.013 14.4 5.1 1.3 1 0 0 1 1 1 1 RNA pol II promoter Fmp27 protein domain AAA_3 PF07726.11 gi|257388941|ref|YP_003178714.1| - 0.0093 15.8 0.7 0.03 14.2 0.0 2.3 3 1 0 3 3 1 1 ATPase family associated with various cellular activities (AAA) TsaE PF02367.17 gi|257388941|ref|YP_003178714.1| - 0.01 15.8 0.0 0.021 14.8 0.0 1.5 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE Atg14 PF10186.9 gi|257388941|ref|YP_003178714.1| - 0.011 14.9 0.5 0.015 14.4 0.5 1.2 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 CPT PF07931.12 gi|257388941|ref|YP_003178714.1| - 0.011 15.6 0.0 0.025 14.4 0.0 1.7 1 0 0 1 1 1 0 Chloramphenicol phosphotransferase-like protein AAA_28 PF13521.6 gi|257388941|ref|YP_003178714.1| - 0.015 15.6 1.7 0.027 14.7 0.1 2.4 2 1 0 2 2 1 0 AAA domain AAA_7 PF12775.7 gi|257388941|ref|YP_003178714.1| - 0.017 14.7 1.6 0.054 13.0 0.1 2.3 2 1 0 2 2 2 0 P-loop containing dynein motor region GAS PF13851.6 gi|257388941|ref|YP_003178714.1| - 0.017 14.4 7.3 0.032 13.6 7.3 1.4 1 0 0 1 1 1 0 Growth-arrest specific micro-tubule binding Torsin PF06309.11 gi|257388941|ref|YP_003178714.1| - 0.02 15.0 0.1 0.058 13.5 0.0 1.7 2 0 0 2 2 1 0 Torsin NB-ARC PF00931.22 gi|257388941|ref|YP_003178714.1| - 0.023 13.9 0.0 0.065 12.4 0.0 1.9 1 1 0 1 1 1 0 NB-ARC domain RNA_helicase PF00910.22 gi|257388941|ref|YP_003178714.1| - 0.026 14.9 0.0 0.079 13.4 0.0 1.9 1 0 0 1 1 1 0 RNA helicase AAA_30 PF13604.6 gi|257388941|ref|YP_003178714.1| - 0.029 14.1 0.3 0.099 12.3 0.2 1.9 1 1 0 1 1 1 0 AAA domain DUF2334 PF10096.9 gi|257388941|ref|YP_003178714.1| - 0.037 13.7 0.1 0.068 12.8 0.1 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2334) SHE3 PF17078.5 gi|257388941|ref|YP_003178714.1| - 0.051 13.3 8.9 0.091 12.5 8.9 1.4 1 0 0 1 1 1 0 SWI5-dependent HO expression protein 3 NTPase_1 PF03266.15 gi|257388941|ref|YP_003178714.1| - 0.057 13.3 2.2 0.36 10.7 0.0 2.9 2 2 0 3 3 3 0 NTPase bZIP_1 PF00170.21 gi|257388941|ref|YP_003178714.1| - 0.074 13.2 13.3 0.14 12.2 2.6 2.7 1 1 1 2 2 2 0 bZIP transcription factor ResIII PF04851.15 gi|257388941|ref|YP_003178714.1| - 0.11 12.5 1.0 4.7 7.2 0.0 2.6 2 1 0 2 2 2 0 Type III restriction enzyme, res subunit ATPase PF06745.13 gi|257388941|ref|YP_003178714.1| - 0.11 11.8 4.7 0.77 9.1 0.0 3.2 2 1 1 3 3 3 0 KaiC AAA_11 PF13086.6 gi|257388941|ref|YP_003178714.1| - 0.12 12.1 0.2 0.12 12.1 0.2 2.4 1 1 0 2 2 2 0 AAA domain AAA_24 PF13479.6 gi|257388941|ref|YP_003178714.1| - 0.14 11.8 0.1 0.14 11.8 0.1 2.8 3 1 0 3 3 3 0 AAA domain Sigma54_activ_2 PF14532.6 gi|257388941|ref|YP_003178714.1| - 0.14 12.2 0.1 0.6 10.2 0.0 2.1 2 0 0 2 2 1 0 Sigma-54 interaction domain ABC_tran PF00005.27 gi|257388941|ref|YP_003178714.1| - 0.16 12.5 4.8 0.37 11.3 0.0 2.8 2 1 0 2 2 2 0 ABC transporter AAA_25 PF13481.6 gi|257388941|ref|YP_003178714.1| - 0.16 11.5 6.9 0.69 9.5 0.1 3.5 2 2 0 3 3 3 0 AAA domain DUF2075 PF09848.9 gi|257388941|ref|YP_003178714.1| - 0.17 11.1 2.9 0.71 9.0 0.0 2.3 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) CCDC106 PF15794.5 gi|257388941|ref|YP_003178714.1| - 0.2 11.3 5.1 0.35 10.5 5.1 1.3 1 0 0 1 1 1 0 Coiled-coil domain-containing protein 106 ADIP PF11559.8 gi|257388941|ref|YP_003178714.1| - 0.31 11.1 9.1 0.68 10.0 9.1 1.4 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding APG6_N PF17675.1 gi|257388941|ref|YP_003178714.1| - 0.54 10.8 13.9 0.11 13.0 9.7 2.0 2 0 0 2 2 1 0 Apg6 coiled-coil region YabA PF06156.13 gi|257388941|ref|YP_003178714.1| - 0.84 10.3 8.0 54 4.5 8.1 2.6 2 1 0 2 2 2 0 Initiation control protein YabA Cep57_CLD_2 PF14197.6 gi|257388941|ref|YP_003178714.1| - 1.1 9.4 11.5 2.8 8.1 11.5 1.6 1 0 0 1 1 1 0 Centrosome localisation domain of PPC89 SlyX PF04102.12 gi|257388941|ref|YP_003178714.1| - 1.4 9.6 10.4 12 6.6 9.9 2.8 1 1 0 1 1 1 0 SlyX Takusan PF04822.13 gi|257388941|ref|YP_003178714.1| - 1.8 8.5 8.4 0.9 9.5 5.5 1.9 2 0 0 2 2 1 0 Takusan Nup54 PF13874.6 gi|257388941|ref|YP_003178714.1| - 2.2 8.4 8.5 5.1 7.2 8.5 1.7 1 1 0 1 1 1 0 Nucleoporin complex subunit 54 DUF4407 PF14362.6 gi|257388941|ref|YP_003178714.1| - 2.3 7.5 5.0 4.5 6.5 5.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) ZapB PF06005.12 gi|257388941|ref|YP_003178714.1| - 2.9 8.4 17.3 5 7.6 15.7 2.3 2 1 0 2 2 1 0 Cell division protein ZapB DUF3687 PF12459.8 gi|257388942|ref|YP_003178715.1| - 0.012 15.1 0.4 0.014 14.9 0.4 1.3 1 1 0 1 1 1 0 D-Ala-teichoic acid biosynthesis protein Syndecan PF01034.20 gi|257388942|ref|YP_003178715.1| - 0.03 14.2 0.1 0.033 14.1 0.1 1.1 1 0 0 1 1 1 0 Syndecan domain SIMPL PF04402.14 gi|257388943|ref|YP_003178716.1| - 2.8e-30 106.3 10.4 3.6e-30 105.9 10.4 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF541) T2SSJ PF11612.8 gi|257388943|ref|YP_003178716.1| - 0.0037 17.5 0.0 1.4 9.1 0.1 2.3 1 1 1 2 2 2 2 Type II secretion system (T2SS), protein J Flg_hook PF02120.16 gi|257388943|ref|YP_003178716.1| - 0.0054 16.6 0.1 0.016 15.1 0.1 1.8 1 0 0 1 1 1 1 Flagellar hook-length control protein FliK Robl_LC7 PF03259.17 gi|257388943|ref|YP_003178716.1| - 0.086 12.6 0.6 0.21 11.4 0.6 1.6 1 0 0 1 1 1 0 Roadblock/LC7 domain Polyketide_cyc2 PF10604.9 gi|257388944|ref|YP_003178717.1| - 0.032 14.5 0.0 0.033 14.5 0.0 1.1 1 0 0 1 1 1 0 Polyketide cyclase / dehydrase and lipid transport VKG_Carbox PF05090.14 gi|257388945|ref|YP_003178718.1| - 8e-11 41.4 0.0 1.1e-10 41.0 0.0 1.1 1 0 0 1 1 1 1 Vitamin K-dependent gamma-carboxylase PadR PF03551.14 gi|257388946|ref|YP_003178719.1| - 1.7e-05 24.7 0.0 2.7e-05 24.0 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family DUF4364 PF14277.6 gi|257388946|ref|YP_003178719.1| - 0.042 13.6 0.0 0.048 13.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4364) HTH_20 PF12840.7 gi|257388946|ref|YP_003178719.1| - 0.086 12.9 0.0 0.14 12.3 0.0 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain Acyl-CoA_dh_1 PF00441.24 gi|257388948|ref|YP_003178721.1| - 1.2e-50 171.6 0.6 1.9e-50 171.0 0.6 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|257388948|ref|YP_003178721.1| - 3.4e-38 130.8 3.0 3.8e-38 130.6 0.8 2.1 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_2 PF08028.11 gi|257388948|ref|YP_003178721.1| - 3.1e-28 98.7 0.3 5.7e-28 97.8 0.3 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.19 gi|257388948|ref|YP_003178721.1| - 2.6e-21 75.6 0.0 5.1e-21 74.7 0.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain DUF3829 PF12889.7 gi|257388948|ref|YP_003178721.1| - 0.015 14.8 0.1 0.023 14.2 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3829) 3HCDH_N PF02737.18 gi|257388949|ref|YP_003178722.1| - 3.3e-61 206.3 2.8 4.5e-61 205.9 2.8 1.1 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 3HCDH PF00725.22 gi|257388949|ref|YP_003178722.1| - 5.2e-33 113.5 0.1 3.2e-32 111.0 0.0 2.3 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain NAD_Gly3P_dh_N PF01210.23 gi|257388949|ref|YP_003178722.1| - 0.00064 19.7 0.4 0.0014 18.6 0.4 1.7 1 1 0 1 1 1 1 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus NAD_binding_2 PF03446.15 gi|257388949|ref|YP_003178722.1| - 0.00075 19.7 5.1 0.0027 17.9 4.0 2.2 1 1 1 2 2 2 1 NAD binding domain of 6-phosphogluconate dehydrogenase Pyr_redox_2 PF07992.14 gi|257388949|ref|YP_003178722.1| - 0.01 15.1 0.3 0.016 14.5 0.3 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase 2-Hacid_dh_C PF02826.19 gi|257388949|ref|YP_003178722.1| - 0.018 14.4 0.0 0.031 13.6 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain F420_oxidored PF03807.17 gi|257388949|ref|YP_003178722.1| - 0.043 14.4 2.4 0.087 13.4 0.9 2.3 2 1 0 2 2 2 0 NADP oxidoreductase coenzyme F420-dependent UDPG_MGDP_dh_N PF03721.14 gi|257388949|ref|YP_003178722.1| - 0.052 13.1 1.8 0.1 12.2 1.8 1.5 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain NAD_binding_8 PF13450.6 gi|257388949|ref|YP_003178722.1| - 0.17 12.1 0.4 0.44 10.8 0.4 1.7 1 0 0 1 1 1 0 NAD(P)-binding Rossmann-like domain DeoC PF01791.9 gi|257388950|ref|YP_003178723.1| - 1e-39 136.5 0.0 1.2e-39 136.3 0.0 1.0 1 0 0 1 1 1 1 DeoC/LacD family aldolase PucR PF07905.11 gi|257388950|ref|YP_003178723.1| - 0.016 15.5 0.0 0.68 10.2 0.0 2.6 1 1 2 3 3 3 0 Purine catabolism regulatory protein-like family Glyco_hydro_3_C PF01915.22 gi|257388950|ref|YP_003178723.1| - 0.02 14.8 0.1 0.025 14.5 0.1 1.2 1 0 0 1 1 1 0 Glycosyl hydrolase family 3 C-terminal domain FBPase PF00316.20 gi|257388951|ref|YP_003178724.1| - 2.8e-25 88.9 0.0 4.1e-25 88.4 0.0 1.2 1 0 0 1 1 1 1 Fructose-1-6-bisphosphatase, N-terminal domain Inositol_P PF00459.25 gi|257388951|ref|YP_003178724.1| - 0.0023 17.5 0.1 0.014 14.9 0.1 1.9 2 0 0 2 2 2 1 Inositol monophosphatase family Carboxyl_trans PF01039.22 gi|257388952|ref|YP_003178725.1| - 3.1e-126 421.9 0.0 3.7e-126 421.7 0.0 1.0 1 0 0 1 1 1 1 Carboxyl transferase domain PagP PF07017.11 gi|257388953|ref|YP_003178726.1| - 0.072 12.5 0.0 0.089 12.2 0.0 1.3 1 0 0 1 1 1 0 Antimicrobial peptide resistance and lipid A acylation protein PagP MaoC_dehydratas PF01575.19 gi|257388954|ref|YP_003178727.1| - 4.1e-26 90.9 0.1 5.5e-26 90.6 0.1 1.1 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.6 gi|257388954|ref|YP_003178727.1| - 0.00023 21.3 0.3 0.00073 19.7 0.3 1.7 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase HATPase_c PF02518.26 gi|257388955|ref|YP_003178728.1| - 2.7e-17 63.3 0.1 7.1e-17 61.9 0.1 1.7 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_2 PF13185.6 gi|257388955|ref|YP_003178728.1| - 1.6e-15 57.6 9.3 1.7e-07 31.6 0.1 3.4 3 0 0 3 3 3 2 GAF domain HisKA PF00512.25 gi|257388955|ref|YP_003178728.1| - 9e-11 41.7 1.0 9e-11 41.7 1.0 2.9 2 1 1 3 3 3 1 His Kinase A (phospho-acceptor) domain GAF PF01590.26 gi|257388955|ref|YP_003178728.1| - 1.6e-09 38.5 0.3 2.6e-05 24.9 0.0 3.0 2 1 1 3 3 3 2 GAF domain GAF_3 PF13492.6 gi|257388955|ref|YP_003178728.1| - 3.6e-08 33.8 0.0 7e-05 23.2 0.0 2.9 2 0 0 2 2 2 2 GAF domain PAS_3 PF08447.12 gi|257388955|ref|YP_003178728.1| - 1.1e-06 28.9 0.0 3e-06 27.4 0.0 1.7 1 0 0 1 1 1 1 PAS fold CCB2_CCB4 PF11152.8 gi|257388955|ref|YP_003178728.1| - 2.6e-06 26.9 0.0 0.0011 18.3 0.0 2.4 2 0 0 2 2 2 2 Cofactor assembly of complex C subunit B, CCB2/CCB4 HATPase_c_2 PF13581.6 gi|257388955|ref|YP_003178728.1| - 0.0015 18.5 1.6 0.0038 17.2 0.0 2.5 3 0 0 3 3 3 1 Histidine kinase-like ATPase domain HATPase_c_3 PF13589.6 gi|257388955|ref|YP_003178728.1| - 0.005 16.7 0.0 0.015 15.2 0.0 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Bac_DnaA PF00308.18 gi|257388955|ref|YP_003178728.1| - 0.054 13.3 0.0 0.14 12.0 0.0 1.6 2 0 0 2 2 2 0 Bacterial dnaA protein Prok-RING_1 PF14446.6 gi|257388956|ref|YP_003178729.1| - 0.0027 17.6 0.4 0.0041 17.0 0.4 1.2 1 0 0 1 1 1 1 Prokaryotic RING finger family 1 NOB1_Zn_bind PF08772.11 gi|257388956|ref|YP_003178729.1| - 0.0093 16.1 1.4 0.018 15.2 1.4 1.4 1 0 0 1 1 1 1 Nin one binding (NOB1) Zn-ribbon like DZR PF12773.7 gi|257388956|ref|YP_003178729.1| - 0.012 15.6 0.5 0.019 14.9 0.5 1.3 1 0 0 1 1 1 0 Double zinc ribbon zinc_ribbon_15 PF17032.5 gi|257388956|ref|YP_003178729.1| - 0.032 15.0 0.1 0.048 14.4 0.1 1.3 1 0 0 1 1 1 0 zinc-ribbon family HypA PF01155.19 gi|257388956|ref|YP_003178729.1| - 0.034 14.2 0.3 0.07 13.2 0.3 1.4 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ribbon_3 PF13248.6 gi|257388956|ref|YP_003178729.1| - 0.034 13.6 1.4 0.074 12.5 1.4 1.5 1 0 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|257388956|ref|YP_003178729.1| - 0.075 12.8 0.3 0.17 11.7 0.3 1.5 1 0 0 1 1 1 0 zinc-ribbon domain zinc-ribbons_6 PF07191.12 gi|257388956|ref|YP_003178729.1| - 0.12 12.4 0.2 0.2 11.6 0.2 1.3 1 0 0 1 1 1 0 zinc-ribbons Zn-ribbon_8 PF09723.10 gi|257388956|ref|YP_003178729.1| - 0.61 10.2 2.3 1.2 9.3 2.3 1.4 1 0 0 1 1 1 0 Zinc ribbon domain ABC_tran PF00005.27 gi|257388957|ref|YP_003178730.1| - 2.1e-15 57.5 0.2 1.1e-14 55.1 0.2 1.9 1 1 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|257388957|ref|YP_003178730.1| - 1.9e-06 27.5 1.5 0.0057 16.1 0.2 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|257388957|ref|YP_003178730.1| - 9.6e-05 22.3 0.2 0.023 14.5 0.0 2.2 1 1 0 2 2 2 1 AAA domain, putative AbiEii toxin, Type IV TA system AAA PF00004.29 gi|257388957|ref|YP_003178730.1| - 0.00016 22.1 0.1 0.18 12.2 0.0 2.4 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.14 gi|257388957|ref|YP_003178730.1| - 0.0041 17.1 0.0 2.3 8.2 0.0 2.6 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) AAA_29 PF13555.6 gi|257388957|ref|YP_003178730.1| - 0.0046 16.7 0.0 0.0088 15.8 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.6 gi|257388957|ref|YP_003178730.1| - 0.013 15.2 0.9 0.065 12.9 0.9 1.9 1 1 0 1 1 1 0 AAA ATPase domain CAC1F_C PF16885.5 gi|257388957|ref|YP_003178730.1| - 0.021 14.5 0.2 0.025 14.3 0.2 1.1 1 0 0 1 1 1 0 Voltage-gated calcium channel subunit alpha, C-term AAA_22 PF13401.6 gi|257388957|ref|YP_003178730.1| - 0.031 14.5 0.2 0.74 10.1 0.0 2.4 2 1 0 2 2 2 0 AAA domain AAA_28 PF13521.6 gi|257388957|ref|YP_003178730.1| - 0.036 14.3 1.1 0.58 10.4 0.4 2.7 2 1 0 2 2 2 0 AAA domain AAA_18 PF13238.6 gi|257388957|ref|YP_003178730.1| - 0.048 14.2 0.3 0.18 12.3 0.0 2.1 2 1 0 2 2 2 0 AAA domain AAA_27 PF13514.6 gi|257388957|ref|YP_003178730.1| - 0.079 12.5 0.0 0.22 11.1 0.0 1.8 1 0 0 1 1 1 0 AAA domain FAD-oxidase_C PF02913.19 gi|257388957|ref|YP_003178730.1| - 0.08 12.6 0.1 0.13 11.9 0.1 1.4 1 1 0 1 1 1 0 FAD linked oxidases, C-terminal domain AAA_33 PF13671.6 gi|257388957|ref|YP_003178730.1| - 0.1 12.8 0.0 0.21 11.7 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|257388957|ref|YP_003178730.1| - 0.1 12.3 0.0 0.23 11.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain Cytidylate_kin PF02224.18 gi|257388957|ref|YP_003178730.1| - 0.13 12.0 0.0 0.31 10.8 0.0 1.6 1 0 0 1 1 1 0 Cytidylate kinase SKI PF01202.22 gi|257388957|ref|YP_003178730.1| - 0.13 12.3 0.7 0.26 11.4 0.0 1.9 2 0 0 2 2 1 0 Shikimate kinase Rad17 PF03215.15 gi|257388957|ref|YP_003178730.1| - 0.17 11.8 0.0 0.3 11.0 0.0 1.3 1 0 0 1 1 1 0 Rad17 P-loop domain AAA_23 PF13476.6 gi|257388957|ref|YP_003178730.1| - 0.28 11.7 0.0 0.28 11.7 0.0 2.3 2 1 0 2 2 2 0 AAA domain AAA_16 PF13191.6 gi|257388957|ref|YP_003178730.1| - 0.34 11.3 1.4 4.6 7.6 1.4 2.3 1 1 0 1 1 1 0 AAA ATPase domain DNA_pol_phi PF04931.13 gi|257388957|ref|YP_003178730.1| - 7.1 4.6 8.3 9.3 4.2 8.3 1.1 1 0 0 1 1 1 0 DNA polymerase phi UPF0051 PF01458.17 gi|257388958|ref|YP_003178731.1| - 2.6e-72 243.1 0.5 3.4e-72 242.7 0.5 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) HWE_HK PF07536.14 gi|257388958|ref|YP_003178731.1| - 0.084 13.6 0.0 0.17 12.6 0.0 1.4 1 0 0 1 1 1 0 HWE histidine kinase UPF0051 PF01458.17 gi|257388959|ref|YP_003178732.1| - 1.3e-62 211.3 1.5 1.6e-62 211.0 1.5 1.1 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) PKD PF00801.20 gi|257388960|ref|YP_003178733.1| - 1e-31 108.6 13.2 2.1e-16 59.5 1.9 3.1 2 0 0 2 2 2 2 PKD domain Glyco_hydro_18 PF00704.28 gi|257388960|ref|YP_003178733.1| - 1.5e-10 41.3 1.6 4e-09 36.6 0.7 2.3 1 1 1 2 2 2 1 Glycosyl hydrolases family 18 CBM_5_12 PF02839.14 gi|257388960|ref|YP_003178733.1| - 1e-08 35.3 8.9 0.00061 20.2 1.6 3.3 2 0 0 2 2 2 2 Carbohydrate binding domain CBM_5_12_2 PF14600.6 gi|257388960|ref|YP_003178733.1| - 8.3e-05 22.4 11.5 0.046 13.6 2.1 2.9 2 0 0 2 2 2 2 Cellulose-binding domain PKD_3 PF16820.5 gi|257388960|ref|YP_003178733.1| - 0.00085 19.0 6.1 0.32 10.8 0.2 3.1 3 0 0 3 3 3 2 PKD-like domain Y_Y_Y PF07495.13 gi|257388960|ref|YP_003178733.1| - 0.0036 17.2 0.3 1.4 9.0 0.1 2.6 2 0 0 2 2 2 1 Y_Y_Y domain ChitinaseA_N PF08329.10 gi|257388960|ref|YP_003178733.1| - 0.0063 16.2 1.9 0.85 9.3 0.3 2.6 2 0 0 2 2 2 2 Chitinase A, N-terminal domain DUF4625 PF15418.6 gi|257388960|ref|YP_003178733.1| - 0.011 15.9 0.9 3.1 8.0 0.1 2.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4625) Cadherin PF00028.17 gi|257388960|ref|YP_003178733.1| - 0.07 13.6 1.1 13 6.3 0.1 2.7 2 0 0 2 2 2 0 Cadherin domain MG2 PF01835.19 gi|257388960|ref|YP_003178733.1| - 0.3 11.6 1.7 14 6.2 0.1 3.0 1 1 2 3 3 3 0 MG2 domain DUF5011 PF16403.5 gi|257388960|ref|YP_003178733.1| - 0.33 11.1 9.5 1.4 9.1 0.5 3.3 3 0 0 3 3 3 0 Domain of unknown function (DUF5011) Glyco_hydro_18 PF00704.28 gi|257388961|ref|YP_003178734.1| - 1.5e-66 225.3 3.1 2.5e-66 224.5 3.1 1.4 1 0 0 1 1 1 1 Glycosyl hydrolases family 18 PKD PF00801.20 gi|257388961|ref|YP_003178734.1| - 2.3e-09 37.0 0.5 8.3e-09 35.2 0.5 2.0 1 0 0 1 1 1 1 PKD domain DUF5011 PF16403.5 gi|257388961|ref|YP_003178734.1| - 4.6e-06 26.7 0.9 1.4e-05 25.2 0.9 1.8 1 0 0 1 1 1 1 Domain of unknown function (DUF5011) CBM_5_12_2 PF14600.6 gi|257388961|ref|YP_003178734.1| - 0.00013 21.8 10.2 0.054 13.4 1.8 3.1 2 0 0 2 2 2 2 Cellulose-binding domain Invasin_D3 PF09134.10 gi|257388961|ref|YP_003178734.1| - 0.011 16.0 0.7 0.075 13.3 0.7 2.2 2 0 0 2 2 2 0 Invasin, domain 3 BiPBP_C PF06832.12 gi|257388961|ref|YP_003178734.1| - 0.02 15.0 0.0 0.044 13.8 0.0 1.6 1 0 0 1 1 1 0 Penicillin-Binding Protein C-terminus Family CBM_5_12 PF02839.14 gi|257388961|ref|YP_003178734.1| - 0.022 15.3 2.2 0.022 15.3 2.2 4.1 4 0 0 4 4 4 0 Carbohydrate binding domain DUF4625 PF15418.6 gi|257388961|ref|YP_003178734.1| - 0.044 14.0 0.2 0.16 12.2 0.0 1.9 2 0 0 2 2 2 0 Domain of unknown function (DUF4625) Cadherin-like PF12733.7 gi|257388961|ref|YP_003178734.1| - 0.076 13.5 1.0 0.26 11.8 1.0 1.9 1 0 0 1 1 1 0 Cadherin-like beta sandwich domain Glyco_hydro_18 PF00704.28 gi|257388962|ref|YP_003178735.1| - 2e-72 244.6 1.2 2e-72 244.6 1.2 1.4 2 0 0 2 2 2 1 Glycosyl hydrolases family 18 PKD PF00801.20 gi|257388962|ref|YP_003178735.1| - 4.6e-10 39.2 2.0 7.9e-10 38.4 0.6 2.1 2 0 0 2 2 2 1 PKD domain CBM_5_12 PF02839.14 gi|257388962|ref|YP_003178735.1| - 9.8e-06 25.9 13.7 0.022 15.3 2.1 3.3 2 0 0 2 2 2 2 Carbohydrate binding domain CBM_5_12_2 PF14600.6 gi|257388962|ref|YP_003178735.1| - 8.7e-05 22.4 19.7 0.0018 18.2 5.7 3.4 4 0 0 4 4 4 2 Cellulose-binding domain REJ PF02010.15 gi|257388962|ref|YP_003178735.1| - 0.00019 20.4 0.3 0.0035 16.2 0.0 2.0 1 1 1 2 2 2 1 REJ domain PKD_3 PF16820.5 gi|257388962|ref|YP_003178735.1| - 0.0071 16.1 0.1 0.018 14.7 0.1 1.7 1 0 0 1 1 1 1 PKD-like domain Cadherin_5 PF17892.1 gi|257388962|ref|YP_003178735.1| - 0.033 14.1 4.3 0.05 13.6 1.7 2.5 2 0 0 2 2 2 0 Cadherin-like domain Big_9 PF17963.1 gi|257388962|ref|YP_003178735.1| - 0.39 11.5 9.0 0.38 11.5 3.8 3.1 2 0 0 2 2 2 0 Bacterial Ig domain DUF5011 PF16403.5 gi|257388962|ref|YP_003178735.1| - 0.61 10.2 3.4 0.29 11.3 0.2 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF5011) PKD PF00801.20 gi|257388963|ref|YP_003178736.1| - 1e-13 50.9 5.2 3e-13 49.4 5.2 1.8 1 0 0 1 1 1 1 PKD domain Glyco_hydro_18 PF00704.28 gi|257388963|ref|YP_003178736.1| - 3.4e-11 43.4 0.5 8.4e-11 42.2 0.4 1.6 1 1 0 1 1 1 1 Glycosyl hydrolases family 18 CBM_5_12_2 PF14600.6 gi|257388963|ref|YP_003178736.1| - 7.7e-07 28.9 12.8 0.006 16.5 3.4 3.3 2 0 0 2 2 2 2 Cellulose-binding domain CBM_5_12 PF02839.14 gi|257388963|ref|YP_003178736.1| - 5.9e-06 26.6 11.6 0.00037 20.9 2.5 3.3 2 0 0 2 2 2 2 Carbohydrate binding domain ChitinaseA_N PF08329.10 gi|257388963|ref|YP_003178736.1| - 0.0043 16.7 1.4 0.012 15.3 1.4 1.7 1 0 0 1 1 1 1 Chitinase A, N-terminal domain LcrG PF07216.12 gi|257388963|ref|YP_003178736.1| - 0.11 12.4 0.0 0.3 11.0 0.0 1.7 2 0 0 2 2 2 0 LcrG protein Ferritin_2 PF13668.6 gi|257388964|ref|YP_003178737.1| - 0.014 15.6 0.9 0.081 13.1 0.2 1.9 1 1 1 2 2 2 0 Ferritin-like domain Get5_C PF18514.1 gi|257388964|ref|YP_003178737.1| - 0.029 14.1 0.0 0.13 12.0 0.0 2.2 2 0 0 2 2 2 0 Get5 C-terminal domain DUF4226 PF10774.9 gi|257388964|ref|YP_003178737.1| - 0.032 14.5 1.6 0.075 13.3 0.5 2.0 2 0 0 2 2 2 0 Domain of unknown function (DUF4226) Fe_dep_repress PF01325.19 gi|257388965|ref|YP_003178738.1| - 2.8e-19 69.1 0.1 5.2e-19 68.2 0.1 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Fe_dep_repr_C PF02742.15 gi|257388965|ref|YP_003178738.1| - 6.3e-10 39.0 0.7 9.7e-10 38.4 0.3 1.6 2 0 0 2 2 2 1 Iron dependent repressor, metal binding and dimerisation domain HTH_Crp_2 PF13545.6 gi|257388965|ref|YP_003178738.1| - 9.5e-06 25.5 0.0 2.3e-05 24.3 0.0 1.7 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain MarR_2 PF12802.7 gi|257388965|ref|YP_003178738.1| - 3.8e-05 23.5 0.0 7.7e-05 22.5 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|257388965|ref|YP_003178738.1| - 4.2e-05 23.0 0.0 7.9e-05 22.1 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.6 gi|257388965|ref|YP_003178738.1| - 6e-05 23.5 0.0 0.00013 22.4 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.22 gi|257388965|ref|YP_003178738.1| - 0.00046 20.1 0.0 0.00082 19.3 0.0 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|257388965|ref|YP_003178738.1| - 0.00049 19.9 0.0 0.00096 19.0 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|257388965|ref|YP_003178738.1| - 0.0042 17.4 0.0 0.0066 16.8 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator HTH_20 PF12840.7 gi|257388965|ref|YP_003178738.1| - 0.0096 16.0 0.0 0.022 14.8 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|257388965|ref|YP_003178738.1| - 0.016 15.1 0.0 0.03 14.2 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family DUF4423 PF14394.6 gi|257388965|ref|YP_003178738.1| - 0.021 14.5 0.0 0.032 13.9 0.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_AsnC-type PF13404.6 gi|257388965|ref|YP_003178738.1| - 0.033 14.0 0.0 0.13 12.1 0.0 1.9 2 0 0 2 2 2 0 AsnC-type helix-turn-helix domain HTH_IclR PF09339.10 gi|257388965|ref|YP_003178738.1| - 0.042 13.7 0.0 0.08 12.8 0.0 1.5 1 0 0 1 1 1 0 IclR helix-turn-helix domain FeoC PF09012.10 gi|257388965|ref|YP_003178738.1| - 0.08 13.0 0.0 0.23 11.6 0.0 1.7 2 0 0 2 2 2 0 FeoC like transcriptional regulator DUF2250 PF10007.9 gi|257388965|ref|YP_003178738.1| - 0.11 12.6 0.0 0.17 12.0 0.0 1.3 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Aminotran_4 PF01063.19 gi|257388967|ref|YP_003178740.1| - 4.9e-46 157.4 0.0 5.6e-46 157.2 0.0 1.0 1 0 0 1 1 1 1 Amino-transferase class IV GATase PF00117.28 gi|257388968|ref|YP_003178741.1| - 2.5e-40 138.3 0.0 3.3e-40 137.9 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.13 gi|257388968|ref|YP_003178741.1| - 0.00011 22.0 0.7 0.00051 19.9 0.7 2.1 1 1 0 1 1 1 1 Peptidase C26 Chorismate_bind PF00425.18 gi|257388969|ref|YP_003178742.1| - 7.3e-101 337.1 0.0 9.6e-101 336.7 0.0 1.2 1 0 0 1 1 1 1 chorismate binding enzyme Anth_synt_I_N PF04715.13 gi|257388969|ref|YP_003178742.1| - 3.4e-07 30.5 0.0 1.2e-06 28.7 0.0 1.8 2 0 0 2 2 2 1 Anthranilate synthase component I, N terminal region HHH_5 PF14520.6 gi|257388970|ref|YP_003178743.1| - 2.8e-10 40.7 0.0 4.9e-10 39.9 0.0 1.4 1 0 0 1 1 1 1 Helix-hairpin-helix domain DUF4332 PF14229.6 gi|257388970|ref|YP_003178743.1| - 3.2e-06 27.4 0.1 2.2e-05 24.7 0.1 2.0 1 1 0 1 1 1 1 Domain of unknown function (DUF4332) DNA_pol_lambd_f PF10391.9 gi|257388970|ref|YP_003178743.1| - 0.0021 17.9 0.0 0.003 17.3 0.0 1.3 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda Cdd1 PF11731.8 gi|257388970|ref|YP_003178743.1| - 0.0028 17.8 0.0 0.0045 17.2 0.0 1.3 1 0 0 1 1 1 1 Pathogenicity locus IMS_HHH PF11798.8 gi|257388970|ref|YP_003178743.1| - 0.0057 16.9 0.0 0.01 16.1 0.0 1.5 1 0 0 1 1 1 1 IMS family HHH motif BAF PF02961.14 gi|257388970|ref|YP_003178743.1| - 0.026 15.0 0.0 0.04 14.3 0.0 1.3 1 0 0 1 1 1 0 Barrier to autointegration factor RNA_pol_A_CTD PF03118.15 gi|257388970|ref|YP_003178743.1| - 0.13 12.1 0.0 0.23 11.3 0.0 1.3 1 0 0 1 1 1 0 Bacterial RNA polymerase, alpha chain C terminal domain GAGE PF05831.11 gi|257388970|ref|YP_003178743.1| - 1.4 9.5 8.8 1.7 9.2 4.3 2.1 1 1 1 2 2 2 0 GAGE protein Shikimate_dh_N PF08501.11 gi|257388971|ref|YP_003178744.1| - 1.2e-27 96.0 0.0 2.3e-27 95.1 0.0 1.5 1 0 0 1 1 1 1 Shikimate dehydrogenase substrate binding domain SDH_C PF18317.1 gi|257388971|ref|YP_003178744.1| - 7.7e-12 44.8 0.2 1.9e-11 43.5 0.2 1.7 1 0 0 1 1 1 1 Shikimate 5'-dehydrogenase C-terminal domain Shikimate_DH PF01488.20 gi|257388971|ref|YP_003178744.1| - 2.5e-11 43.8 0.0 3.8e-11 43.2 0.0 1.2 1 0 0 1 1 1 1 Shikimate / quinate 5-dehydrogenase F420_oxidored PF03807.17 gi|257388971|ref|YP_003178744.1| - 0.00094 19.7 0.1 0.0016 19.0 0.1 1.4 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent IlvN PF07991.12 gi|257388971|ref|YP_003178744.1| - 0.001 18.7 0.3 0.0017 18.0 0.3 1.3 1 0 0 1 1 1 1 Acetohydroxy acid isomeroreductase, NADPH-binding domain 2-Hacid_dh_C PF02826.19 gi|257388971|ref|YP_003178744.1| - 0.0014 18.1 0.1 0.0025 17.2 0.1 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain adh_short PF00106.25 gi|257388971|ref|YP_003178744.1| - 0.0042 16.6 2.5 0.0054 16.2 1.1 1.9 2 1 1 3 3 3 1 short chain dehydrogenase NAD_binding_2 PF03446.15 gi|257388971|ref|YP_003178744.1| - 0.0063 16.7 0.1 0.009 16.2 0.1 1.3 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|257388971|ref|YP_003178744.1| - 0.021 15.1 1.8 0.063 13.5 1.0 2.2 2 1 0 2 2 2 0 Saccharopine dehydrogenase NADP binding domain AdoHcyase_NAD PF00670.21 gi|257388971|ref|YP_003178744.1| - 0.039 14.0 0.8 0.059 13.4 0.8 1.2 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain GIDA PF01134.22 gi|257388971|ref|YP_003178744.1| - 0.48 9.4 1.8 0.62 9.1 1.8 1.1 1 0 0 1 1 1 0 Glucose inhibited division protein A Na_Ca_ex PF01699.24 gi|257388972|ref|YP_003178745.1| - 5.1e-14 52.5 23.4 1.5e-08 34.8 2.2 3.1 3 1 0 3 3 3 2 Sodium/calcium exchanger protein tRNA_deacylase PF04414.12 gi|257388973|ref|YP_003178746.1| - 1.1e-61 208.0 0.0 1.4e-61 207.7 0.0 1.1 1 0 0 1 1 1 1 D-aminoacyl-tRNA deacylase Tubulin PF00091.25 gi|257388974|ref|YP_003178747.1| - 3.9e-41 141.4 0.4 6.3e-41 140.7 0.4 1.4 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain FtsZ_C PF12327.8 gi|257388974|ref|YP_003178747.1| - 1.9e-33 114.6 6.2 3.1e-33 113.9 0.5 3.4 4 0 0 4 4 4 1 FtsZ family, C-terminal domain Tubulin_2 PF13809.6 gi|257388974|ref|YP_003178747.1| - 0.042 13.0 8.5 0.036 13.2 1.2 2.6 1 1 1 2 2 2 0 Tubulin like NAD_binding_10 PF13460.6 gi|257388974|ref|YP_003178747.1| - 0.062 13.2 3.1 0.16 11.9 0.2 2.3 2 0 0 2 2 2 0 NAD(P)H-binding Wzy_C PF04932.15 gi|257388975|ref|YP_003178748.1| - 0.24 11.0 2.5 0.27 10.9 2.5 1.1 1 0 0 1 1 1 0 O-Antigen ligase SecE PF00584.20 gi|257388976|ref|YP_003178749.1| - 0.00016 21.5 1.5 0.00021 21.2 1.5 1.1 1 0 0 1 1 1 1 SecE/Sec61-gamma subunits of protein translocation complex Spt5-NGN PF03439.13 gi|257388977|ref|YP_003178750.1| - 8.8e-24 83.2 0.1 1.4e-23 82.6 0.1 1.3 1 0 0 1 1 1 1 Early transcription elongation factor of RNA pol II, NGN section KOW PF00467.29 gi|257388977|ref|YP_003178750.1| - 6.8e-08 32.2 0.8 1.3e-07 31.3 0.3 1.8 2 0 0 2 2 2 1 KOW motif DbpA PF03880.15 gi|257388977|ref|YP_003178750.1| - 0.059 13.4 0.3 0.31 11.1 0.1 2.0 2 0 0 2 2 2 0 DbpA RNA binding domain Glyco_hydro_65C PF03633.15 gi|257388977|ref|YP_003178750.1| - 0.11 12.5 0.2 0.19 11.7 0.2 1.4 1 0 0 1 1 1 0 Glycosyl hydrolase family 65, C-terminal domain TAT_signal PF10518.9 gi|257388978|ref|YP_003178751.1| - 0.044 13.6 1.3 0.1 12.5 1.3 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence ABC_tran PF00005.27 gi|257388979|ref|YP_003178752.1| - 5.3e-26 91.8 0.0 7.1e-26 91.3 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|257388979|ref|YP_003178752.1| - 7.8e-11 42.3 0.2 7.2e-07 29.3 0.0 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system RsgA_GTPase PF03193.16 gi|257388979|ref|YP_003178752.1| - 0.0094 15.9 0.0 0.015 15.2 0.0 1.2 1 0 0 1 1 1 1 RsgA GTPase AAA_16 PF13191.6 gi|257388979|ref|YP_003178752.1| - 0.019 15.3 0.1 0.048 14.0 0.1 1.8 1 1 0 1 1 1 0 AAA ATPase domain MMR_HSR1 PF01926.23 gi|257388979|ref|YP_003178752.1| - 0.035 14.2 0.0 0.31 11.1 0.0 2.1 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_23 PF13476.6 gi|257388979|ref|YP_003178752.1| - 0.036 14.6 0.0 0.055 14.0 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|257388979|ref|YP_003178752.1| - 0.039 13.7 0.0 0.076 12.8 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_10 PF12846.7 gi|257388979|ref|YP_003178752.1| - 0.13 11.2 0.0 0.16 10.8 0.0 1.2 1 0 0 1 1 1 0 AAA-like domain ABC2_membrane_2 PF12679.7 gi|257388980|ref|YP_003178753.1| - 1.4e-31 109.9 10.8 2.6e-31 109.0 10.0 1.6 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|257388980|ref|YP_003178753.1| - 2.1e-07 30.4 7.4 2.3e-07 30.3 7.4 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|257388980|ref|YP_003178753.1| - 4.9e-07 29.9 6.7 4.9e-07 29.9 6.7 1.7 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane PF01061.24 gi|257388980|ref|YP_003178753.1| - 0.0019 17.7 10.3 0.0031 16.9 10.3 1.4 1 0 0 1 1 1 1 ABC-2 type transporter ABC2_membrane_5 PF13346.6 gi|257388980|ref|YP_003178753.1| - 0.006 16.2 2.8 0.011 15.3 2.8 1.4 1 0 0 1 1 1 1 ABC-2 family transporter protein Oxidored_q3 PF00499.20 gi|257388980|ref|YP_003178753.1| - 0.53 10.0 12.6 1.2 8.9 12.6 1.8 1 1 0 1 1 1 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DUF2207 PF09972.9 gi|257388982|ref|YP_003178755.1| - 5.3 5.7 4.4 3 6.5 3.3 1.2 1 1 0 1 1 1 0 Predicted membrane protein (DUF2207) DUF3148 PF11347.8 gi|257388983|ref|YP_003178756.1| - 0.0021 17.8 1.5 0.88 9.4 0.1 3.1 3 0 0 3 3 3 2 Protein of unknown function (DUF3148) DUF4112 PF13430.6 gi|257388984|ref|YP_003178757.1| - 0.022 15.0 0.3 0.027 14.8 0.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4112) DUF21 PF01595.20 gi|257388984|ref|YP_003178757.1| - 1.9 8.2 6.1 19 4.9 5.6 2.1 1 1 0 1 1 1 0 Cyclin M transmembrane N-terminal domain End_N_terminal PF12218.8 gi|257388985|ref|YP_003178758.1| - 0.021 14.5 0.0 0.036 13.8 0.0 1.4 1 0 0 1 1 1 0 N terminal extension of bacteriophage endosialidase EF-hand_7 PF13499.6 gi|257388985|ref|YP_003178758.1| - 0.026 15.0 0.0 0.028 14.9 0.0 1.2 1 0 0 1 1 1 0 EF-hand domain pair PadR PF03551.14 gi|257388986|ref|YP_003178759.1| - 5.9e-09 35.8 0.0 8.8e-09 35.2 0.0 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family FUR PF01475.19 gi|257388986|ref|YP_003178759.1| - 0.00016 21.8 0.0 0.00024 21.3 0.0 1.2 1 0 0 1 1 1 1 Ferric uptake regulator family MarR_2 PF12802.7 gi|257388986|ref|YP_003178759.1| - 0.00019 21.2 0.0 0.00041 20.2 0.0 1.6 1 1 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|257388986|ref|YP_003178759.1| - 0.0014 19.0 0.0 0.0027 18.1 0.0 1.5 1 0 0 1 1 1 1 Winged helix DNA-binding domain TrmB PF01978.19 gi|257388986|ref|YP_003178759.1| - 0.0075 16.1 0.0 0.016 15.0 0.0 1.5 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.12 gi|257388986|ref|YP_003178759.1| - 0.029 14.3 0.0 0.056 13.4 0.0 1.4 1 0 0 1 1 1 0 HTH domain HTH_5 PF01022.20 gi|257388986|ref|YP_003178759.1| - 0.033 14.1 0.0 0.053 13.4 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family HTH_34 PF13601.6 gi|257388986|ref|YP_003178759.1| - 0.038 14.2 0.0 0.075 13.2 0.0 1.5 1 1 0 1 1 1 0 Winged helix DNA-binding domain HTH_45 PF14947.6 gi|257388986|ref|YP_003178759.1| - 0.04 13.9 0.0 0.06 13.3 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix Rrf2 PF02082.20 gi|257388986|ref|YP_003178759.1| - 0.093 13.1 0.0 0.14 12.5 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator COX1 PF00115.20 gi|257388987|ref|YP_003178760.1| - 1.6e-139 465.5 58.0 2.1e-139 465.1 58.0 1.1 1 0 0 1 1 1 1 Cytochrome C and Quinol oxidase polypeptide I MFS_1 PF07690.16 gi|257388988|ref|YP_003178761.1| - 0.0038 16.2 1.1 0.0038 16.2 1.1 3.3 1 1 1 3 3 3 2 Major Facilitator Superfamily ArsP_1 PF03773.13 gi|257388989|ref|YP_003178762.1| - 1e-73 248.1 9.8 1.4e-73 247.6 9.8 1.2 1 0 0 1 1 1 1 Predicted permease ATPase-cat_bd PF12156.8 gi|257388989|ref|YP_003178762.1| - 0.3 11.8 0.7 0.49 11.2 0.7 1.3 1 0 0 1 1 1 0 Putative metal-binding domain of cation transport ATPase HMA PF00403.26 gi|257388990|ref|YP_003178763.1| - 6.4e-07 29.7 2.1 7.1e-07 29.6 2.1 1.0 1 0 0 1 1 1 1 Heavy-metal-associated domain PQQ_2 PF13360.6 gi|257388991|ref|YP_003178764.1| - 8.6e-06 25.5 9.9 2.7e-05 23.9 8.6 2.1 1 1 1 2 2 2 1 PQQ-like domain PQQ_3 PF13570.6 gi|257388991|ref|YP_003178764.1| - 0.0059 17.1 2.8 0.0059 17.1 2.8 4.4 5 1 0 5 5 5 1 PQQ-like domain TAT_signal PF10518.9 gi|257388991|ref|YP_003178764.1| - 0.011 15.5 0.5 0.021 14.6 0.5 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence NHL PF01436.21 gi|257388991|ref|YP_003178764.1| - 7.2 6.8 12.0 22 5.3 0.9 4.7 5 0 0 5 5 5 0 NHL repeat DUF2182 PF09948.9 gi|257388992|ref|YP_003178765.1| - 1.5e-44 152.2 7.4 1.5e-44 152.2 7.4 1.4 2 0 0 2 2 2 1 Predicted metal-binding integral membrane protein (DUF2182) Baculo_PEP_C PF04513.12 gi|257388993|ref|YP_003178766.1| - 0.16 12.0 0.0 0.34 11.0 0.0 1.6 1 1 0 1 1 1 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF2207 PF09972.9 gi|257388993|ref|YP_003178766.1| - 0.23 10.2 3.8 1.7 7.3 0.0 2.1 2 0 0 2 2 2 0 Predicted membrane protein (DUF2207) DUF389 PF04087.14 gi|257388994|ref|YP_003178767.1| - 5.8e-28 97.7 16.9 5.8e-28 97.7 16.9 2.4 3 0 0 3 3 3 1 Domain of unknown function (DUF389) Glyco_transf_28 PF03033.20 gi|257388995|ref|YP_003178768.1| - 0.19 11.7 0.0 0.31 11.1 0.0 1.3 1 0 0 1 1 1 0 Glycosyltransferase family 28 N-terminal domain PHP_C PF13263.6 gi|257388996|ref|YP_003178769.1| - 3.7e-14 52.2 0.2 6.9e-14 51.3 0.2 1.5 1 0 0 1 1 1 1 PHP-associated CTP-dep_RFKase PF01982.16 gi|257388996|ref|YP_003178769.1| - 0.095 12.8 0.0 0.16 12.1 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function DUF120 YdjM PF04307.14 gi|257388997|ref|YP_003178770.1| - 1.1e-13 50.8 2.1 1.1e-12 47.7 2.1 1.9 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase Zn_dep_PLPC PF00882.18 gi|257388997|ref|YP_003178770.1| - 6.4e-05 23.0 0.1 8.9e-05 22.5 0.1 1.2 1 0 0 1 1 1 1 Zinc dependent phospholipase C CinA PF02464.17 gi|257388998|ref|YP_003178771.1| - 1.7e-56 190.1 0.7 2.2e-56 189.7 0.7 1.0 1 0 0 1 1 1 1 Competence-damaged protein YkuD PF03734.14 gi|257388998|ref|YP_003178771.1| - 0.15 12.5 0.1 0.21 12.0 0.1 1.2 1 0 0 1 1 1 0 L,D-transpeptidase catalytic domain DUF5489 PF17592.2 gi|257389000|ref|YP_003178773.1| - 0.022 15.3 1.0 0.023 15.2 1.0 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5489) DUF3784 PF12650.7 gi|257389000|ref|YP_003178773.1| - 0.046 13.9 0.9 0.05 13.8 0.9 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF3784) PGPGW PF09656.10 gi|257389000|ref|YP_003178773.1| - 0.057 12.9 6.3 0.44 10.1 0.2 2.1 2 0 0 2 2 2 0 Putative transmembrane protein (PGPGW) DUF5345 PF17280.2 gi|257389000|ref|YP_003178773.1| - 0.11 12.4 0.4 0.2 11.7 0.4 1.4 1 0 0 1 1 1 0 Family of unknown function (DUF5345) DUF3040 PF11239.8 gi|257389000|ref|YP_003178773.1| - 0.83 10.0 7.0 1.8 8.9 7.0 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF3040) Neurensin PF14927.6 gi|257389000|ref|YP_003178773.1| - 9.1 6.0 10.5 3 7.5 1.7 2.0 1 1 1 2 2 2 0 Neurensin Aminotran_1_2 PF00155.21 gi|257389001|ref|YP_003178774.1| - 1.3e-48 166.1 0.0 1.4e-48 165.9 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Aminotran_5 PF00266.19 gi|257389001|ref|YP_003178774.1| - 1.2e-07 31.1 0.0 2e-07 30.3 0.0 1.3 1 0 0 1 1 1 1 Aminotransferase class-V Aminotran_3 PF00202.21 gi|257389001|ref|YP_003178774.1| - 0.011 14.4 0.0 0.017 13.8 0.0 1.2 1 0 0 1 1 1 0 Aminotransferase class-III Beta_elim_lyase PF01212.21 gi|257389001|ref|YP_003178774.1| - 0.011 15.0 0.0 0.015 14.6 0.0 1.2 1 0 0 1 1 1 0 Beta-eliminating lyase Cys_Met_Meta_PP PF01053.20 gi|257389001|ref|YP_003178774.1| - 0.05 12.1 0.0 0.063 11.8 0.0 1.1 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme Peptidase_M24 PF00557.24 gi|257389002|ref|YP_003178775.1| - 2.9e-37 128.4 1.7 3.7e-37 128.1 1.7 1.2 1 0 0 1 1 1 1 Metallopeptidase family M24 Creatinase_N PF01321.18 gi|257389002|ref|YP_003178775.1| - 5.2e-13 49.8 0.0 1.4e-12 48.4 0.0 1.8 2 0 0 2 2 2 1 Creatinase/Prolidase N-terminal domain NTP_transf_3 PF12804.7 gi|257389003|ref|YP_003178776.1| - 1.1e-34 120.1 7.9 1.4e-34 119.7 7.9 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain CTP_transf_3 PF02348.19 gi|257389003|ref|YP_003178776.1| - 0.00084 19.3 0.0 0.0016 18.4 0.0 1.7 1 1 0 1 1 1 1 Cytidylyltransferase DUF1205 PF06722.12 gi|257389003|ref|YP_003178776.1| - 0.11 12.6 0.1 0.32 11.1 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF1205) Rhomboid PF01694.22 gi|257389004|ref|YP_003178777.1| - 5.7e-24 84.8 14.9 5.7e-24 84.8 14.9 1.7 2 0 0 2 2 2 1 Rhomboid family zf-AN1 PF01428.16 gi|257389004|ref|YP_003178777.1| - 1.2e-11 44.5 9.5 1.7e-11 44.1 9.5 1.2 1 0 0 1 1 1 1 AN1-like Zinc finger DUF1751 PF08551.10 gi|257389004|ref|YP_003178777.1| - 0.016 15.8 0.6 0.016 15.8 0.6 1.8 1 1 1 2 2 2 0 Eukaryotic integral membrane protein (DUF1751) zf-HIT PF04438.16 gi|257389004|ref|YP_003178777.1| - 0.15 12.0 6.5 0.21 11.5 6.5 1.2 1 0 0 1 1 1 0 HIT zinc finger Endonuclease_5 PF04493.14 gi|257389005|ref|YP_003178778.1| - 3.7e-52 176.9 0.0 4.8e-52 176.5 0.0 1.1 1 0 0 1 1 1 1 Endonuclease V UvrC_HhH_N PF08459.11 gi|257389005|ref|YP_003178778.1| - 0.047 13.6 0.0 0.067 13.1 0.0 1.2 1 0 0 1 1 1 0 UvrC Helix-hairpin-helix N-terminal LPG_synthase_TM PF03706.13 gi|257389006|ref|YP_003178779.1| - 0.0077 15.8 6.5 0.0084 15.7 6.5 1.0 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region Phage_holin_3_6 PF07332.11 gi|257389006|ref|YP_003178779.1| - 0.23 11.5 6.9 0.27 11.3 6.9 1.1 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III adh_short PF00106.25 gi|257389007|ref|YP_003178780.1| - 8e-51 172.3 0.1 9.8e-51 172.0 0.1 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.6 gi|257389007|ref|YP_003178780.1| - 1.2e-41 142.8 0.7 1.6e-41 142.4 0.4 1.2 1 1 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.10 gi|257389007|ref|YP_003178780.1| - 6.7e-12 45.7 0.0 1.2e-11 44.9 0.0 1.4 1 0 0 1 1 1 1 KR domain Epimerase PF01370.21 gi|257389007|ref|YP_003178780.1| - 2.4e-05 23.9 0.1 8.9e-05 22.1 0.1 2.1 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family DUF1776 PF08643.10 gi|257389007|ref|YP_003178780.1| - 0.00017 21.1 0.0 0.00038 19.9 0.0 1.5 1 1 0 1 1 1 1 Fungal family of unknown function (DUF1776) RmlD_sub_bind PF04321.17 gi|257389007|ref|YP_003178780.1| - 0.00081 18.6 1.0 0.001 18.2 0.3 1.5 2 0 0 2 2 2 1 RmlD substrate binding domain baeRF_family2 PF18844.1 gi|257389007|ref|YP_003178780.1| - 0.0051 16.9 1.3 0.0051 16.9 1.3 1.8 2 0 0 2 2 2 1 Bacterial archaeo-eukaryotic release factor family 2 NmrA PF05368.13 gi|257389007|ref|YP_003178780.1| - 0.031 13.8 0.3 0.047 13.2 0.3 1.2 1 0 0 1 1 1 0 NmrA-like family DJ-1_PfpI PF01965.24 gi|257389008|ref|YP_003178781.1| - 4.1e-27 95.0 1.2 6.2e-27 94.4 1.2 1.2 1 0 0 1 1 1 1 DJ-1/PfpI family ArsA_ATPase PF02374.15 gi|257389009|ref|YP_003178782.1| - 1.4e-78 264.2 0.0 4.1e-78 262.7 0.0 1.6 1 1 0 1 1 1 1 Anion-transporting ATPase CbiA PF01656.23 gi|257389009|ref|YP_003178782.1| - 2.4e-08 34.1 0.0 3.6e-08 33.5 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|257389009|ref|YP_003178782.1| - 4.8e-06 26.6 0.0 1.3e-05 25.2 0.0 1.6 2 0 0 2 2 2 1 AAA domain ParA PF10609.9 gi|257389009|ref|YP_003178782.1| - 0.00093 18.7 0.0 0.0028 17.1 0.0 1.7 2 0 0 2 2 2 1 NUBPL iron-transfer P-loop NTPase Fer4_NifH PF00142.18 gi|257389009|ref|YP_003178782.1| - 0.009 15.5 0.1 0.014 14.8 0.1 1.2 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family SRP54 PF00448.22 gi|257389009|ref|YP_003178782.1| - 0.01 15.5 0.1 0.37 10.4 0.2 2.2 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain PhoH PF02562.16 gi|257389009|ref|YP_003178782.1| - 0.015 14.7 0.0 0.034 13.6 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein AAA_16 PF13191.6 gi|257389009|ref|YP_003178782.1| - 0.083 13.3 0.1 0.97 9.8 0.0 2.2 2 0 0 2 2 2 0 AAA ATPase domain Med9 PF07544.13 gi|257389009|ref|YP_003178782.1| - 0.095 12.8 0.0 0.17 12.0 0.0 1.3 1 0 0 1 1 1 0 RNA polymerase II transcription mediator complex subunit 9 Zeta_toxin PF06414.12 gi|257389009|ref|YP_003178782.1| - 0.11 11.8 0.1 0.22 10.7 0.1 1.5 1 0 0 1 1 1 0 Zeta toxin AAA_24 PF13479.6 gi|257389009|ref|YP_003178782.1| - 0.13 12.0 0.0 0.34 10.6 0.0 1.7 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|257389009|ref|YP_003178782.1| - 0.14 11.7 2.0 0.75 9.3 0.4 2.4 2 0 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|257389009|ref|YP_003178782.1| - 0.19 11.5 0.0 0.3 10.8 0.0 1.3 1 0 0 1 1 1 0 IstB-like ATP binding protein zf-ribbon_3 PF13248.6 gi|257389010|ref|YP_003178783.1| - 0.0022 17.3 0.8 0.93 9.0 0.1 2.2 2 0 0 2 2 2 2 zinc-ribbon domain DZR PF12773.7 gi|257389010|ref|YP_003178783.1| - 0.005 16.8 0.3 0.011 15.7 0.3 1.5 1 1 0 1 1 1 1 Double zinc ribbon RecR PF02132.15 gi|257389010|ref|YP_003178783.1| - 0.01 15.4 1.4 0.019 14.5 1.4 1.5 1 1 0 1 1 1 0 RecR protein zf-C2HC5 PF06221.13 gi|257389010|ref|YP_003178783.1| - 0.033 14.2 0.5 0.15 12.1 0.5 1.8 1 1 0 1 1 1 0 Putative zinc finger motif, C2HC5-type Zn-ribbon_8 PF09723.10 gi|257389010|ref|YP_003178783.1| - 0.068 13.3 2.5 0.14 12.3 2.5 1.5 1 1 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_2 PF13240.6 gi|257389010|ref|YP_003178783.1| - 0.15 11.8 3.7 4.2 7.2 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain Thioredoxin_4 PF13462.6 gi|257389011|ref|YP_003178784.1| - 1.3e-18 67.7 0.0 1.7e-18 67.4 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|257389011|ref|YP_003178784.1| - 4.5e-10 39.9 0.4 8.3e-09 35.9 0.4 2.1 1 1 0 1 1 1 1 Thioredoxin-like domain DSBA PF01323.20 gi|257389011|ref|YP_003178784.1| - 5.4e-08 32.8 0.5 5.4e-08 32.8 0.5 1.4 2 0 0 2 2 2 1 DSBA-like thioredoxin domain Thioredoxin PF00085.20 gi|257389011|ref|YP_003178784.1| - 0.003 17.5 0.0 0.12 12.4 0.0 2.2 2 0 0 2 2 2 1 Thioredoxin tRNA_anti-codon PF01336.25 gi|257389011|ref|YP_003178784.1| - 0.025 14.6 0.0 0.48 10.4 0.0 2.2 2 0 0 2 2 2 0 OB-fold nucleic acid binding domain Thioredoxin_5 PF13743.6 gi|257389011|ref|YP_003178784.1| - 0.079 12.6 0.9 0.13 11.9 0.1 1.7 2 0 0 2 2 2 0 Thioredoxin Thioredoxin_7 PF13899.6 gi|257389011|ref|YP_003178784.1| - 0.16 12.2 0.0 0.41 10.8 0.0 1.7 2 0 0 2 2 2 0 Thioredoxin-like DUF1375 PF07119.12 gi|257389012|ref|YP_003178785.1| - 0.041 14.3 1.2 0.041 14.3 1.2 3.1 3 2 1 4 4 4 0 Protein of unknown function (DUF1375) Phage_TTP_11 PF16460.5 gi|257389012|ref|YP_003178785.1| - 0.1 12.4 0.0 0.16 11.8 0.0 1.3 1 0 0 1 1 1 0 Phage tail tube, TTP, lambda-like Gly-zipper_Omp PF13488.6 gi|257389013|ref|YP_003178786.1| - 0.9 9.6 5.4 1.5 8.8 5.4 1.4 1 0 0 1 1 1 0 Glycine zipper GT87 PF09594.10 gi|257389013|ref|YP_003178786.1| - 0.92 9.2 13.1 40 3.8 13.1 2.1 1 1 0 1 1 1 0 Glycosyltransferase family 87 Helicase_C_2 PF13307.6 gi|257389014|ref|YP_003178787.1| - 1.4e-23 84.0 0.0 2.3e-23 83.2 0.0 1.3 1 0 0 1 1 1 1 Helicase C-terminal domain DEAD_2 PF06733.15 gi|257389014|ref|YP_003178787.1| - 1.8e-14 53.8 0.0 6.2e-11 42.2 0.0 2.1 2 0 0 2 2 2 2 DEAD_2 ResIII PF04851.15 gi|257389014|ref|YP_003178787.1| - 3.7e-09 36.8 0.0 7.7e-06 26.0 0.0 2.2 2 0 0 2 2 2 2 Type III restriction enzyme, res subunit DEAD PF00270.29 gi|257389014|ref|YP_003178787.1| - 1.4e-08 34.7 0.0 0.0015 18.3 0.0 2.5 2 0 0 2 2 2 2 DEAD/DEAH box helicase PhoH PF02562.16 gi|257389014|ref|YP_003178787.1| - 3.7e-07 29.8 1.5 1.9e-05 24.2 0.1 2.2 2 0 0 2 2 2 1 PhoH-like protein AAA_22 PF13401.6 gi|257389014|ref|YP_003178787.1| - 0.0055 17.0 4.8 5.4 7.3 0.0 3.4 2 1 1 3 3 3 2 AAA domain AAA_19 PF13245.6 gi|257389014|ref|YP_003178787.1| - 0.0055 17.0 0.1 0.058 13.7 0.1 2.3 1 1 0 1 1 1 1 AAA domain zf_Rg PF17915.1 gi|257389014|ref|YP_003178787.1| - 0.0076 15.6 0.1 0.023 14.1 0.0 1.8 2 0 0 2 2 2 1 Reverse gyrase zinc finger AAA_30 PF13604.6 gi|257389014|ref|YP_003178787.1| - 0.011 15.5 2.2 0.066 12.9 0.3 2.5 2 1 0 2 2 2 0 AAA domain DUF2075 PF09848.9 gi|257389014|ref|YP_003178787.1| - 0.017 14.4 1.3 0.43 9.8 0.3 2.1 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2075) SNF2_N PF00176.23 gi|257389014|ref|YP_003178787.1| - 0.096 11.4 0.0 0.17 10.5 0.0 1.3 1 0 0 1 1 1 0 SNF2 family N-terminal domain PAS_9 PF13426.7 gi|257389015|ref|YP_003178788.1| - 5.5e-34 116.6 0.0 9.9e-15 54.7 0.0 3.5 3 0 0 3 3 3 3 PAS domain PAS_4 PF08448.10 gi|257389015|ref|YP_003178788.1| - 2.9e-33 114.4 9.2 6e-14 52.2 0.1 3.9 4 0 0 4 4 4 3 PAS fold PAS PF00989.25 gi|257389015|ref|YP_003178788.1| - 2.4e-28 98.4 0.1 3.2e-14 52.9 0.0 2.7 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.7 gi|257389015|ref|YP_003178788.1| - 3.3e-15 55.7 0.1 4.9e-06 26.4 0.0 3.2 3 0 0 3 3 2 2 PAS domain HATPase_c PF02518.26 gi|257389015|ref|YP_003178788.1| - 6.5e-11 42.7 0.0 2.1e-10 41.1 0.0 1.9 1 1 1 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_7 PF12860.7 gi|257389015|ref|YP_003178788.1| - 4.5e-07 30.0 1.5 0.0049 17.0 0.1 3.6 4 0 0 4 4 4 2 PAS fold HATPase_c_2 PF13581.6 gi|257389015|ref|YP_003178788.1| - 2.3e-06 27.6 1.6 4.1e-06 26.8 0.3 2.3 2 1 0 2 2 2 1 Histidine kinase-like ATPase domain PAS_3 PF08447.12 gi|257389015|ref|YP_003178788.1| - 4.2e-05 23.8 0.0 0.013 15.8 0.0 3.5 3 0 0 3 3 3 1 PAS fold PAS_10 PF13596.6 gi|257389015|ref|YP_003178788.1| - 8.9e-05 23.0 0.0 0.13 12.9 0.0 2.8 2 0 0 2 2 2 2 PAS domain HisKA PF00512.25 gi|257389015|ref|YP_003178788.1| - 0.0026 17.8 0.3 0.014 15.4 0.3 2.5 1 0 0 1 1 1 1 His Kinase A (phospho-acceptor) domain HATPase_c_5 PF14501.6 gi|257389015|ref|YP_003178788.1| - 0.0053 16.7 0.0 0.011 15.7 0.0 1.5 1 0 0 1 1 1 1 GHKL domain PAS_12 PF18095.1 gi|257389015|ref|YP_003178788.1| - 0.065 12.9 0.0 0.13 11.9 0.0 1.4 1 0 0 1 1 1 0 UPF0242 C-terminal PAS-like domain RasGAP_C PF03836.15 gi|257389015|ref|YP_003178788.1| - 0.18 12.0 0.7 12 6.0 0.1 2.5 2 0 0 2 2 2 0 RasGAP C-terminus NHL PF01436.21 gi|257389016|ref|YP_003178789.1| - 1.3e-15 56.6 17.9 1.3e-05 25.0 0.2 9.0 9 1 0 9 9 9 3 NHL repeat SGL PF08450.12 gi|257389016|ref|YP_003178789.1| - 0.00027 20.6 3.2 1.3 8.6 0.0 5.5 4 2 4 8 8 8 1 SMP-30/Gluconolactonase/LRE-like region SBBP PF06739.11 gi|257389016|ref|YP_003178789.1| - 0.01 15.8 0.0 0.27 11.3 0.0 3.0 2 0 0 2 2 2 0 Beta-propeller repeat Ldl_recept_b PF00058.17 gi|257389016|ref|YP_003178789.1| - 0.019 15.5 0.6 4.3 7.9 0.0 3.9 4 0 0 4 4 4 0 Low-density lipoprotein receptor repeat class B Reg_prop PF07494.11 gi|257389016|ref|YP_003178789.1| - 0.044 14.0 0.1 1.2 9.6 0.0 3.3 2 0 0 2 2 2 0 Two component regulator propeller Pertactin PF03212.14 gi|257389016|ref|YP_003178789.1| - 0.15 12.0 0.0 0.38 10.7 0.0 1.6 1 0 0 1 1 1 0 Pertactin DUF4407 PF14362.6 gi|257389017|ref|YP_003178790.1| - 0.52 9.6 2.1 0.72 9.1 2.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) PEP-CTERM PF07589.11 gi|257389017|ref|YP_003178790.1| - 9.6 6.5 8.8 12 6.2 0.2 2.9 2 2 0 2 2 2 0 PEP-CTERM motif CoA_transf_3 PF02515.17 gi|257389018|ref|YP_003178791.1| - 3e-127 424.7 0.1 3.4e-127 424.6 0.1 1.0 1 0 0 1 1 1 1 CoA-transferase family III B12-binding PF02310.19 gi|257389019|ref|YP_003178792.1| - 2e-19 69.8 0.6 2.6e-19 69.4 0.6 1.2 1 0 0 1 1 1 1 B12 binding domain ADH_zinc_N PF00107.26 gi|257389019|ref|YP_003178792.1| - 0.0011 19.0 0.0 0.066 13.2 0.0 2.2 1 1 1 2 2 2 1 Zinc-binding dehydrogenase DUF3662 PF12401.8 gi|257389019|ref|YP_003178792.1| - 0.0054 17.1 1.1 0.0054 17.1 1.1 1.5 2 0 0 2 2 2 1 Protein of unknown function (DUF2662) Peripla_BP_6 PF13458.6 gi|257389019|ref|YP_003178792.1| - 0.0095 15.6 1.1 0.21 11.2 0.3 2.2 1 1 0 2 2 2 1 Periplasmic binding protein MqsA_antitoxin PF15731.5 gi|257389019|ref|YP_003178792.1| - 0.083 13.0 0.0 0.13 12.3 0.0 1.3 1 1 0 1 1 1 0 Antitoxin component of bacterial toxin-antitoxin system, MqsA UPF0180 PF03698.13 gi|257389019|ref|YP_003178792.1| - 0.11 12.7 0.0 0.37 11.0 0.0 1.9 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0180) Met_asp_mut_E PF06368.11 gi|257389020|ref|YP_003178793.1| - 2.1e-202 672.5 0.0 2.4e-202 672.3 0.0 1.0 1 0 0 1 1 1 1 Methylaspartate mutase E chain (MutE) MAAL_C PF07476.11 gi|257389021|ref|YP_003178794.1| - 1.4e-110 368.4 0.0 1.7e-110 368.0 0.0 1.1 1 0 0 1 1 1 1 Methylaspartate ammonia-lyase C-terminus MAAL_N PF05034.13 gi|257389021|ref|YP_003178794.1| - 1.9e-67 225.9 0.2 3.6e-67 225.0 0.0 1.5 2 0 0 2 2 2 1 Methylaspartate ammonia-lyase N-terminus MR_MLE_C PF13378.6 gi|257389021|ref|YP_003178794.1| - 1.8e-13 50.6 1.0 3.3e-13 49.7 1.0 1.4 1 0 0 1 1 1 1 Enolase C-terminal domain-like MaoC_dehydratas PF01575.19 gi|257389022|ref|YP_003178795.1| - 9.1e-08 31.7 0.0 1.1e-06 28.2 0.0 2.1 2 0 0 2 2 2 1 MaoC like domain MaoC_dehydrat_N PF13452.6 gi|257389022|ref|YP_003178795.1| - 0.0024 18.0 0.0 0.006 16.7 0.0 1.6 1 0 0 1 1 1 1 N-terminal half of MaoC dehydratase HpcH_HpaI PF03328.14 gi|257389023|ref|YP_003178796.1| - 2.1e-17 63.0 0.1 1.6e-16 60.2 0.0 2.3 2 1 0 2 2 2 1 HpcH/HpaI aldolase/citrate lyase family C-C_Bond_Lyase PF15617.6 gi|257389023|ref|YP_003178796.1| - 0.00088 18.5 0.0 0.12 11.5 0.0 2.1 2 0 0 2 2 2 2 C-C_Bond_Lyase of the TIM-Barrel fold Malate_synthase PF01274.22 gi|257389023|ref|YP_003178796.1| - 0.012 13.9 0.0 2.8 6.1 0.0 2.7 2 1 1 3 3 3 0 Malate synthase DNA_pol_B_thumb PF14791.6 gi|257389025|ref|YP_003178798.1| - 2.5e-20 72.4 0.1 8.4e-20 70.7 0.0 2.0 2 0 0 2 2 2 1 DNA polymerase beta thumb HHH_8 PF14716.6 gi|257389025|ref|YP_003178798.1| - 5.2e-19 68.4 3.2 1.7e-16 60.3 0.2 3.4 3 0 0 3 3 3 1 Helix-hairpin-helix domain HHH_5 PF14520.6 gi|257389025|ref|YP_003178798.1| - 4.4e-16 59.2 0.8 5.1e-13 49.4 0.2 3.1 2 0 0 2 2 2 2 Helix-hairpin-helix domain PHP PF02811.19 gi|257389025|ref|YP_003178798.1| - 1.5e-09 38.4 0.0 2.9e-09 37.4 0.0 1.5 1 0 0 1 1 1 1 PHP domain HHH_2 PF12826.7 gi|257389025|ref|YP_003178798.1| - 7.9e-08 32.3 0.5 0.012 15.7 0.0 3.1 2 0 0 2 2 2 2 Helix-hairpin-helix motif DNA_pol_lambd_f PF10391.9 gi|257389025|ref|YP_003178798.1| - 8.4e-06 25.5 0.0 8.9e-05 22.2 0.0 2.4 2 0 0 2 2 2 1 Fingers domain of DNA polymerase lambda DNA_pol_B_palm PF14792.6 gi|257389025|ref|YP_003178798.1| - 0.00021 21.4 0.0 0.00048 20.3 0.0 1.6 1 0 0 1 1 1 1 DNA polymerase beta palm HHH PF00633.23 gi|257389025|ref|YP_003178798.1| - 0.00026 20.7 0.5 0.015 15.2 0.1 3.3 3 0 0 3 3 3 1 Helix-hairpin-helix motif HHH_3 PF12836.7 gi|257389025|ref|YP_003178798.1| - 0.077 13.3 0.0 13 6.1 0.0 3.6 3 1 0 3 3 3 0 Helix-hairpin-helix motif NTP_transf_2 PF01909.23 gi|257389025|ref|YP_003178798.1| - 0.089 13.1 0.2 22 5.4 0.1 2.9 2 1 0 2 2 2 0 Nucleotidyltransferase domain Ribosomal_S13 PF00416.22 gi|257389025|ref|YP_003178798.1| - 0.093 13.1 0.3 7.3 7.0 0.0 3.1 1 1 2 3 3 3 0 Ribosomal protein S13/S18 5_3_exonuc PF01367.20 gi|257389025|ref|YP_003178798.1| - 0.11 13.1 0.9 2.2 8.9 0.2 3.1 2 1 0 2 2 2 0 5'-3' exonuclease, C-terminal SAM fold Mut7-C PF01927.16 gi|257389026|ref|YP_003178799.1| - 4.1e-38 130.8 0.0 4.6e-38 130.6 0.0 1.0 1 0 0 1 1 1 1 Mut7-C RNAse domain DUF5615 PF18480.1 gi|257389026|ref|YP_003178799.1| - 5.8e-06 26.0 0.0 1e-05 25.2 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF5615) DZR PF12773.7 gi|257389026|ref|YP_003178799.1| - 0.022 14.8 0.2 0.052 13.6 0.2 1.6 1 0 0 1 1 1 0 Double zinc ribbon PIN_10 PF18478.1 gi|257389026|ref|YP_003178799.1| - 0.022 15.0 0.0 0.039 14.2 0.0 1.4 1 0 0 1 1 1 0 PIN like domain PQQ_3 PF13570.6 gi|257389026|ref|YP_003178799.1| - 0.057 13.9 0.9 0.12 12.9 0.0 1.9 2 0 0 2 2 2 0 PQQ-like domain LexA_DNA_bind PF01726.16 gi|257389027|ref|YP_003178800.1| - 0.0014 18.4 0.0 0.0019 18.0 0.0 1.2 1 0 0 1 1 1 1 LexA DNA binding domain DUF3263 PF11662.8 gi|257389027|ref|YP_003178800.1| - 0.082 12.8 0.0 0.1 12.5 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3263) HTH_24 PF13412.6 gi|257389027|ref|YP_003178800.1| - 0.085 12.4 0.2 0.42 10.2 0.1 2.0 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_6 PF01418.17 gi|257389027|ref|YP_003178800.1| - 0.14 12.1 0.0 0.19 11.7 0.0 1.2 1 0 0 1 1 1 0 Helix-turn-helix domain, rpiR family HTH_20 PF12840.7 gi|257389028|ref|YP_003178801.1| - 1.6e-06 28.1 0.1 0.00074 19.5 0.1 2.7 2 0 0 2 2 2 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|257389028|ref|YP_003178801.1| - 2e-06 27.6 0.2 9.4e-06 25.4 0.1 2.2 2 1 0 2 2 2 1 MarR family HTH_24 PF13412.6 gi|257389028|ref|YP_003178801.1| - 1.3e-05 24.6 0.0 0.00015 21.3 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|257389028|ref|YP_003178801.1| - 3.3e-05 23.7 0.1 0.0038 17.1 0.0 2.4 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_34 PF13601.6 gi|257389028|ref|YP_003178801.1| - 6.4e-05 23.0 0.0 0.25 11.6 0.0 2.2 2 0 0 2 2 2 2 Winged helix DNA-binding domain HTH_Crp_2 PF13545.6 gi|257389028|ref|YP_003178801.1| - 0.00014 21.8 0.1 0.0011 18.9 0.0 2.4 3 0 0 3 3 3 1 Crp-like helix-turn-helix domain HTH_11 PF08279.12 gi|257389028|ref|YP_003178801.1| - 0.0003 20.7 0.0 0.00056 19.8 0.0 1.4 1 0 0 1 1 1 1 HTH domain TrmB PF01978.19 gi|257389028|ref|YP_003178801.1| - 0.00039 20.2 0.0 0.0013 18.6 0.0 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|257389028|ref|YP_003178801.1| - 0.0006 19.6 1.3 0.0013 18.4 0.3 2.2 2 1 0 2 2 2 1 IclR helix-turn-helix domain MarR PF01047.22 gi|257389028|ref|YP_003178801.1| - 0.001 18.9 0.0 0.012 15.6 0.0 2.3 2 0 0 2 2 2 1 MarR family HTH_AsnC-type PF13404.6 gi|257389028|ref|YP_003178801.1| - 0.0037 17.1 0.4 0.029 14.2 0.0 2.4 2 0 0 2 2 2 1 AsnC-type helix-turn-helix domain Fe_dep_repress PF01325.19 gi|257389028|ref|YP_003178801.1| - 0.0059 16.8 0.0 0.016 15.4 0.0 1.7 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain GntR PF00392.21 gi|257389028|ref|YP_003178801.1| - 0.0096 15.6 0.0 0.024 14.3 0.0 1.7 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_17 PF12728.7 gi|257389028|ref|YP_003178801.1| - 0.042 14.0 0.0 16 5.7 0.0 2.6 3 0 0 3 3 3 0 Helix-turn-helix domain HTH_36 PF13730.6 gi|257389028|ref|YP_003178801.1| - 0.083 12.9 0.0 0.34 10.9 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain DUF2250 PF10007.9 gi|257389028|ref|YP_003178801.1| - 0.16 12.1 0.0 0.83 9.8 0.0 2.0 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) LRV PF01816.17 gi|257389028|ref|YP_003178801.1| - 0.26 11.7 0.6 0.26 11.7 0.6 3.5 4 0 0 4 4 2 0 Leucine rich repeat variant Band_7 PF01145.25 gi|257389029|ref|YP_003178802.1| - 1.1e-39 136.2 2.3 2.4e-39 135.2 2.3 1.5 1 0 0 1 1 1 1 SPFH domain / Band 7 family Band_7_1 PF13421.6 gi|257389029|ref|YP_003178802.1| - 0.0053 16.5 0.1 0.011 15.5 0.1 1.6 1 0 0 1 1 1 1 SPFH domain-Band 7 family DUF296 PF03479.15 gi|257389029|ref|YP_003178802.1| - 0.38 11.1 2.5 2.4 8.6 2.5 2.0 1 1 0 1 1 1 0 Plants and Prokaryotes Conserved (PCC) domain NfeD PF01957.18 gi|257389030|ref|YP_003178803.1| - 1.2e-06 28.8 0.2 2.7e-06 27.6 0.1 1.7 1 1 0 1 1 1 1 NfeD-like C-terminal, partner-binding DUF308 PF03729.13 gi|257389030|ref|YP_003178803.1| - 0.021 15.1 5.8 0.021 15.1 5.8 2.0 2 0 0 2 2 2 0 Short repeat of unknown function (DUF308) DUF2759 PF10958.8 gi|257389031|ref|YP_003178804.1| - 0.35 10.6 10.6 0.53 10.0 8.3 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2759) tRNA-synt_1g PF09334.11 gi|257389032|ref|YP_003178805.1| - 6.3e-136 453.2 0.2 7.4e-135 449.7 0.2 2.0 1 1 0 1 1 1 1 tRNA synthetases class I (M) tRNA_bind PF01588.20 gi|257389032|ref|YP_003178805.1| - 7.2e-19 67.7 0.0 1.2e-18 67.0 0.0 1.4 1 0 0 1 1 1 1 Putative tRNA binding domain tRNA-synt_1 PF00133.22 gi|257389032|ref|YP_003178805.1| - 2e-11 42.9 1.4 7.1e-06 24.6 0.4 2.7 2 1 0 2 2 2 2 tRNA synthetases class I (I, L, M and V) Anticodon_1 PF08264.13 gi|257389032|ref|YP_003178805.1| - 6.5e-09 35.9 0.0 1.1e-08 35.2 0.0 1.3 1 0 0 1 1 1 1 Anticodon-binding domain of tRNA tRNA-synt_1e PF01406.19 gi|257389032|ref|YP_003178805.1| - 3.5e-06 26.6 0.0 0.00056 19.4 0.0 2.2 2 0 0 2 2 2 2 tRNA synthetases class I (C) catalytic domain tRNA-synt_1f PF01921.18 gi|257389032|ref|YP_003178805.1| - 0.073 12.0 0.0 0.18 10.7 0.0 1.7 2 0 0 2 2 2 0 tRNA synthetases class I (K) B PF02216.16 gi|257389032|ref|YP_003178805.1| - 0.11 12.5 0.2 0.3 11.1 0.0 1.8 2 0 0 2 2 2 0 B domain SNARE_assoc PF09335.11 gi|257389033|ref|YP_003178806.1| - 2.7e-09 37.5 2.1 2.7e-09 37.5 2.1 1.9 1 1 1 2 2 2 2 SNARE associated Golgi protein Pyridoxal_deC PF00282.19 gi|257389034|ref|YP_003178807.1| - 8.4e-22 77.4 0.0 1.1e-21 77.0 0.0 1.3 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.19 gi|257389034|ref|YP_003178807.1| - 1.9e-09 37.0 0.0 2.5e-09 36.6 0.0 1.1 1 0 0 1 1 1 1 Aminotransferase class-V SHMT PF00464.19 gi|257389034|ref|YP_003178807.1| - 0.11 11.1 0.0 0.3 9.6 0.0 1.6 1 1 0 1 1 1 0 Serine hydroxymethyltransferase HTH_8 PF02954.19 gi|257389034|ref|YP_003178807.1| - 0.16 11.8 0.0 0.47 10.3 0.0 1.8 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family DUF749 PF05370.11 gi|257389034|ref|YP_003178807.1| - 0.18 11.9 0.0 0.31 11.1 0.0 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF749) ATPase PF06745.13 gi|257389035|ref|YP_003178808.1| - 8.2e-07 28.6 0.0 0.0023 17.3 0.0 2.2 2 0 0 2 2 2 2 KaiC DUF835 PF05763.12 gi|257389035|ref|YP_003178808.1| - 0.0026 17.5 0.0 0.0044 16.8 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF835) AAA_25 PF13481.6 gi|257389035|ref|YP_003178808.1| - 0.026 14.1 0.7 0.068 12.7 0.7 1.7 1 1 0 1 1 1 0 AAA domain PPDK_N PF01326.19 gi|257389036|ref|YP_003178809.1| - 1.3e-104 350.1 0.0 1.9e-104 349.5 0.0 1.2 1 0 0 1 1 1 1 Pyruvate phosphate dikinase, PEP/pyruvate binding domain PEP-utilizers_C PF02896.18 gi|257389036|ref|YP_003178809.1| - 8.9e-80 267.9 0.0 1.2e-79 267.5 0.0 1.2 1 0 0 1 1 1 1 PEP-utilising enzyme, TIM barrel domain PEP-utilizers PF00391.23 gi|257389036|ref|YP_003178809.1| - 1.4e-27 95.2 2.7 4.4e-27 93.6 2.7 1.9 1 0 0 1 1 1 1 PEP-utilising enzyme, mobile domain PhzC-PhzF PF02567.16 gi|257389037|ref|YP_003178810.1| - 1.4e-65 221.6 0.0 1.6e-65 221.4 0.0 1.0 1 0 0 1 1 1 1 Phenazine biosynthesis-like protein DAP_epimerase PF01678.19 gi|257389037|ref|YP_003178810.1| - 3.6e-06 27.1 0.1 0.00075 19.7 0.0 2.3 2 0 0 2 2 2 2 Diaminopimelate epimerase Flagellin_D3 PF08884.11 gi|257389037|ref|YP_003178810.1| - 0.0019 18.6 0.6 0.079 13.4 0.3 2.3 2 0 0 2 2 2 1 Flagellin D3 domain Pro_racemase PF05544.11 gi|257389037|ref|YP_003178810.1| - 0.029 13.4 0.0 0.042 12.9 0.0 1.2 1 0 0 1 1 1 0 Proline racemase Mem_trans PF03547.18 gi|257389038|ref|YP_003178811.1| - 3.7e-20 71.7 19.0 9.5e-11 40.7 8.5 2.1 1 1 1 2 2 2 2 Membrane transport protein NADH-u_ox-rdase PF10785.9 gi|257389038|ref|YP_003178811.1| - 6.8 7.5 6.4 0.88 10.3 0.3 2.7 3 0 0 3 3 3 0 NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit SMC_ScpA PF02616.14 gi|257389040|ref|YP_003178813.1| - 4.8e-13 49.6 0.0 4.3e-09 36.6 0.0 2.2 2 0 0 2 2 2 2 Segregation and condensation protein ScpA SMC_N PF02463.19 gi|257389041|ref|YP_003178814.1| - 7.4e-54 182.5 40.2 1.4e-30 106.4 0.0 3.1 2 1 0 2 2 2 2 RecF/RecN/SMC N terminal domain SMC_hinge PF06470.13 gi|257389041|ref|YP_003178814.1| - 3.3e-28 98.3 0.0 8.4e-28 97.0 0.0 1.8 1 0 0 1 1 1 1 SMC proteins Flexible Hinge Domain AAA_15 PF13175.6 gi|257389041|ref|YP_003178814.1| - 6.5e-17 62.3 22.5 4.3e-14 53.0 0.4 4.4 2 2 0 2 2 2 1 AAA ATPase domain ATG16 PF08614.11 gi|257389041|ref|YP_003178814.1| - 1.7e-11 44.8 148.7 0.0012 19.1 16.7 8.5 2 2 6 8 8 7 5 Autophagy protein 16 (ATG16) AAA_21 PF13304.6 gi|257389041|ref|YP_003178814.1| - 2.6e-11 43.9 6.1 2.6e-06 27.5 4.2 4.6 3 2 1 4 4 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_13 PF13166.6 gi|257389041|ref|YP_003178814.1| - 1.3e-08 34.0 111.8 0.00011 21.0 30.1 7.0 4 2 4 8 8 8 6 AAA domain Spc7 PF08317.11 gi|257389041|ref|YP_003178814.1| - 2.8e-08 33.0 145.0 0.059 12.2 34.5 8.6 2 2 6 8 8 8 6 Spc7 kinetochore protein AAA_29 PF13555.6 gi|257389041|ref|YP_003178814.1| - 2.4e-06 27.2 0.0 7.7e-06 25.6 0.0 1.9 1 0 0 1 1 1 1 P-loop containing region of AAA domain MscS_porin PF12795.7 gi|257389041|ref|YP_003178814.1| - 6.3e-06 25.9 125.9 0.00049 19.7 35.4 5.6 2 2 3 5 5 5 3 Mechanosensitive ion channel porin domain APG6_N PF17675.1 gi|257389041|ref|YP_003178814.1| - 3.4e-05 24.4 182.6 0.14 12.7 14.9 9.9 2 2 8 10 10 10 4 Apg6 coiled-coil region DUF1664 PF07889.12 gi|257389041|ref|YP_003178814.1| - 0.00024 21.2 81.3 0.0057 16.7 5.0 10.1 2 2 7 11 11 11 8 Protein of unknown function (DUF1664) EzrA PF06160.12 gi|257389041|ref|YP_003178814.1| - 0.00024 19.4 113.5 0.0012 17.1 21.0 5.1 2 2 3 5 5 5 3 Septation ring formation regulator, EzrA DUF724 PF05266.14 gi|257389041|ref|YP_003178814.1| - 0.00063 19.6 11.3 0.00063 19.6 11.3 8.6 3 2 5 8 8 8 4 Protein of unknown function (DUF724) Fib_alpha PF08702.10 gi|257389041|ref|YP_003178814.1| - 0.0044 17.2 70.8 0.025 14.8 5.1 6.6 3 2 1 6 6 6 4 Fibrinogen alpha/beta chain family ADIP PF11559.8 gi|257389041|ref|YP_003178814.1| - 0.0092 16.1 5.1 0.0092 16.1 5.1 9.6 3 2 6 10 10 10 3 Afadin- and alpha -actinin-Binding CENP-F_leu_zip PF10473.9 gi|257389041|ref|YP_003178814.1| - 0.028 14.4 149.2 0.031 14.3 11.3 9.1 2 2 7 9 9 9 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 MAD PF05557.13 gi|257389041|ref|YP_003178814.1| - 0.034 12.5 134.8 0.0026 16.2 40.1 4.2 2 2 2 4 4 3 0 Mitotic checkpoint protein Fez1 PF06818.15 gi|257389041|ref|YP_003178814.1| - 0.053 14.0 123.5 0.34 11.3 21.8 7.8 2 2 3 5 5 4 0 Fez1 DUF4200 PF13863.6 gi|257389041|ref|YP_003178814.1| - 0.066 13.6 152.6 0.37 11.2 10.6 9.1 2 2 7 9 9 9 0 Domain of unknown function (DUF4200) Atg14 PF10186.9 gi|257389041|ref|YP_003178814.1| - 0.26 10.4 100.7 1.4 7.9 22.7 6.7 2 2 5 7 7 7 0 Vacuolar sorting 38 and autophagy-related subunit 14 GAS PF13851.6 gi|257389041|ref|YP_003178814.1| - 0.38 10.1 119.9 0.0084 15.5 10.8 8.1 2 2 5 8 8 8 0 Growth-arrest specific micro-tubule binding Filament PF00038.21 gi|257389041|ref|YP_003178814.1| - 0.42 10.1 136.2 0.3 10.6 17.5 6.7 2 2 4 6 6 6 0 Intermediate filament protein AAA_23 PF13476.6 gi|257389041|ref|YP_003178814.1| - 0.53 10.8 143.2 9.7 6.6 65.5 8.5 2 2 2 4 4 3 0 AAA domain Laminin_II PF06009.12 gi|257389041|ref|YP_003178814.1| - 1.4 8.9 82.8 0.11 12.6 6.1 9.2 3 2 7 10 10 10 0 Laminin Domain II ABC_tran_CTD PF16326.5 gi|257389041|ref|YP_003178814.1| - 1.5 9.1 179.7 0.17 12.2 11.8 13.7 4 4 8 13 13 12 0 ABC transporter C-terminal domain ABC_tran PF00005.27 gi|257389041|ref|YP_003178814.1| - 1.7 9.2 0.0 1.7 9.2 0.0 6.4 3 2 0 3 3 1 0 ABC transporter DUF3584 PF12128.8 gi|257389041|ref|YP_003178814.1| - 2.2 5.7 143.7 0.0082 13.7 7.8 4.2 2 2 2 4 4 4 0 Protein of unknown function (DUF3584) TMPIT PF07851.13 gi|257389041|ref|YP_003178814.1| - 4.1 6.5 77.9 0.03 13.6 8.2 7.5 3 2 7 10 10 10 0 TMPIT-like protein Baculo_PEP_C PF04513.12 gi|257389041|ref|YP_003178814.1| - 8.3 6.5 39.2 0.24 11.4 1.2 7.4 4 2 4 9 9 9 0 Baculovirus polyhedron envelope protein, PEP, C terminus FlaC_arch PF05377.11 gi|257389042|ref|YP_003178815.1| - 0.0091 16.4 0.8 0.013 15.9 0.8 1.2 1 0 0 1 1 1 1 Flagella accessory protein C (FlaC) bZIP_1 PF00170.21 gi|257389042|ref|YP_003178815.1| - 0.021 14.9 0.4 0.031 14.4 0.4 1.3 1 0 0 1 1 1 0 bZIP transcription factor SlyX PF04102.12 gi|257389042|ref|YP_003178815.1| - 0.021 15.4 1.1 0.047 14.3 1.1 1.6 1 1 0 1 1 1 0 SlyX Striatin PF08232.12 gi|257389042|ref|YP_003178815.1| - 0.055 14.1 1.9 0.07 13.7 1.9 1.1 1 0 0 1 1 1 0 Striatin family Phlebovirus_NSM PF07246.11 gi|257389042|ref|YP_003178815.1| - 0.064 12.6 0.0 0.1 11.9 0.0 1.3 1 0 0 1 1 1 0 Phlebovirus nonstructural protein NS-M DUF4629 PF15442.6 gi|257389042|ref|YP_003178815.1| - 0.065 13.5 0.9 0.075 13.3 0.9 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4629) TRPM_tetra PF16519.5 gi|257389042|ref|YP_003178815.1| - 0.066 13.3 0.8 0.09 12.9 0.8 1.2 1 0 0 1 1 1 0 Tetramerisation domain of TRPM JIP_LZII PF16471.5 gi|257389042|ref|YP_003178815.1| - 0.088 13.0 2.5 0.15 12.3 2.5 1.3 1 0 0 1 1 1 0 JNK-interacting protein leucine zipper II CCDC53 PF10152.9 gi|257389042|ref|YP_003178815.1| - 0.11 12.9 4.1 0.14 12.5 4.1 1.1 1 0 0 1 1 1 0 Subunit CCDC53 of WASH complex HSBP1 PF06825.12 gi|257389042|ref|YP_003178815.1| - 0.12 12.3 0.4 0.34 10.8 0.0 1.9 3 0 0 3 3 3 0 Heat shock factor binding protein 1 Cnn_1N PF07989.11 gi|257389042|ref|YP_003178815.1| - 0.12 12.5 0.3 0.12 12.5 0.3 1.7 2 0 0 2 2 2 0 Centrosomin N-terminal motif 1 Bcr-Abl_Oligo PF09036.10 gi|257389042|ref|YP_003178815.1| - 0.12 12.4 0.6 0.23 11.5 0.6 1.5 1 0 0 1 1 1 0 Bcr-Abl oncoprotein oligomerisation domain Astro_capsid_p PF12226.8 gi|257389042|ref|YP_003178815.1| - 1.7 7.7 11.0 1.9 7.6 11.0 1.2 1 0 0 1 1 1 0 Turkey astrovirus capsid protein Med4 PF10018.9 gi|257389042|ref|YP_003178815.1| - 2.2 7.9 9.6 0.17 11.5 0.4 2.0 1 1 1 2 2 2 0 Vitamin-D-receptor interacting Mediator subunit 4 Tmemb_18A PF09771.9 gi|257389043|ref|YP_003178816.1| - 0.023 15.1 0.0 0.036 14.5 0.0 1.2 1 0 0 1 1 1 0 Transmembrane protein 188 FHA PF00498.26 gi|257389043|ref|YP_003178816.1| - 0.065 13.6 0.0 0.17 12.2 0.0 1.7 2 0 0 2 2 2 0 FHA domain GatB_N PF02934.15 gi|257389044|ref|YP_003178817.1| - 5.4e-97 324.4 0.0 7.5e-97 324.0 0.0 1.2 1 0 0 1 1 1 1 GatB/GatE catalytic domain GatB_Yqey PF02637.18 gi|257389044|ref|YP_003178817.1| - 1e-40 139.0 0.0 2e-40 138.1 0.0 1.5 1 0 0 1 1 1 1 GatB domain ALF PF03752.13 gi|257389044|ref|YP_003178817.1| - 0.14 12.1 0.6 1.2 9.1 0.2 2.7 2 0 0 2 2 2 0 Short repeats of unknown function Thymidylat_synt PF00303.19 gi|257389045|ref|YP_003178818.1| - 2.9e-93 311.9 0.0 3.7e-93 311.5 0.0 1.0 1 0 0 1 1 1 1 Thymidylate synthase DHFR_1 PF00186.19 gi|257389046|ref|YP_003178819.1| - 5.9e-51 172.4 0.0 6.6e-51 172.2 0.0 1.0 1 0 0 1 1 1 1 Dihydrofolate reductase Epimerase_2 PF02350.19 gi|257389048|ref|YP_003178821.1| - 1.2e-26 93.5 0.1 3e-18 65.8 0.0 2.1 2 0 0 2 2 2 2 UDP-N-acetylglucosamine 2-epimerase Topoisom_bac PF01131.20 gi|257389049|ref|YP_003178822.1| - 2.7e-123 412.0 0.0 3.5e-123 411.7 0.0 1.1 1 0 0 1 1 1 1 DNA topoisomerase zf-C4_Topoisom PF01396.19 gi|257389049|ref|YP_003178822.1| - 4.6e-20 71.1 3.4 2.3e-14 52.9 1.4 4.2 5 0 0 5 5 5 2 Topoisomerase DNA binding C4 zinc finger Toprim PF01751.22 gi|257389049|ref|YP_003178822.1| - 1.5e-16 60.5 0.1 3e-16 59.5 0.1 1.5 1 0 0 1 1 1 1 Toprim domain HHH_5 PF14520.6 gi|257389049|ref|YP_003178822.1| - 1.6e-08 35.0 2.7 3.4e-08 34.0 0.3 2.7 2 0 0 2 2 2 1 Helix-hairpin-helix domain Cdd1 PF11731.8 gi|257389049|ref|YP_003178822.1| - 6.8e-05 23.0 0.0 0.00022 21.4 0.0 1.9 1 0 0 1 1 1 1 Pathogenicity locus HHH PF00633.23 gi|257389049|ref|YP_003178822.1| - 0.016 15.1 0.0 0.071 13.0 0.0 2.2 1 0 0 1 1 1 0 Helix-hairpin-helix motif IMS_HHH PF11798.8 gi|257389049|ref|YP_003178822.1| - 0.049 14.0 0.0 0.14 12.5 0.0 1.8 1 0 0 1 1 1 0 IMS family HHH motif Zn-ribbon_8 PF09723.10 gi|257389049|ref|YP_003178822.1| - 0.58 10.3 10.4 9 6.5 0.0 4.1 3 1 1 4 4 4 0 Zinc ribbon domain Lar_restr_allev PF14354.6 gi|257389049|ref|YP_003178822.1| - 6.2 7.3 12.2 0.4 11.1 1.8 3.2 2 1 1 3 3 3 0 Restriction alleviation protein Lar TF_Zn_Ribbon PF08271.12 gi|257389049|ref|YP_003178822.1| - 8 6.1 10.5 4.3 6.9 0.1 3.7 3 1 0 3 3 3 0 TFIIB zinc-binding Rubredoxin_2 PF18073.1 gi|257389049|ref|YP_003178822.1| - 9.8 6.0 6.2 34 4.3 0.1 2.9 3 0 0 3 3 3 0 Rubredoxin metal binding domain HicA_toxin PF07927.12 gi|257389050|ref|YP_003178823.1| - 0.00013 21.9 0.0 0.00028 20.8 0.0 1.7 1 1 0 1 1 1 1 HicA toxin of bacterial toxin-antitoxin, I-set PF07679.16 gi|257389050|ref|YP_003178823.1| - 0.099 12.7 0.1 0.14 12.2 0.1 1.2 1 0 0 1 1 1 0 Immunoglobulin I-set domain Ig_2 PF13895.6 gi|257389050|ref|YP_003178823.1| - 0.1 13.0 0.1 0.15 12.4 0.1 1.3 1 0 0 1 1 1 0 Immunoglobulin domain AI-2E_transport PF01594.16 gi|257389051|ref|YP_003178824.1| - 2.1e-11 43.6 25.2 3.5e-11 42.8 25.2 1.4 1 1 0 1 1 1 1 AI-2E family transporter TraL PF07178.11 gi|257389051|ref|YP_003178824.1| - 0.015 15.8 0.5 0.015 15.8 0.5 3.6 3 2 1 4 4 4 0 TraL protein PKcGMP_CC PF16808.5 gi|257389052|ref|YP_003178825.1| - 0.045 13.6 0.6 0.045 13.6 0.6 1.7 2 0 0 2 2 2 0 Coiled-coil N-terminus of cGMP-dependent protein kinase Ig_2 PF13895.6 gi|257389052|ref|YP_003178825.1| - 0.17 12.2 0.0 0.21 11.9 0.0 1.2 1 0 0 1 1 1 0 Immunoglobulin domain McrBC PF10117.9 gi|257389053|ref|YP_003178826.1| - 0.2 10.8 0.7 0.47 9.5 0.1 1.8 2 0 0 2 2 2 0 McrBC 5-methylcytosine restriction system component AAA_5 PF07728.14 gi|257389054|ref|YP_003178827.1| - 3e-15 56.4 0.0 8.7e-15 54.9 0.0 1.8 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA PF00004.29 gi|257389054|ref|YP_003178827.1| - 1.3e-05 25.6 0.1 0.00014 22.2 0.0 2.6 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.6 gi|257389054|ref|YP_003178827.1| - 5.9e-05 23.4 0.2 0.00032 21.0 0.2 2.1 1 1 0 1 1 1 1 AAA domain AAA_19 PF13245.6 gi|257389054|ref|YP_003178827.1| - 7.1e-05 23.2 0.4 0.0026 18.1 0.4 2.2 1 1 0 1 1 1 1 AAA domain Mg_chelatase PF01078.21 gi|257389054|ref|YP_003178827.1| - 0.0001 21.8 0.0 0.00019 20.9 0.0 1.3 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI NTPase_1 PF03266.15 gi|257389054|ref|YP_003178827.1| - 0.00011 22.1 0.1 0.003 17.5 0.0 2.2 2 0 0 2 2 2 1 NTPase AAA_30 PF13604.6 gi|257389054|ref|YP_003178827.1| - 0.00016 21.5 0.0 0.00035 20.3 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|257389054|ref|YP_003178827.1| - 0.00062 20.2 0.1 0.0021 18.5 0.0 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_3 PF07726.11 gi|257389054|ref|YP_003178827.1| - 0.00091 19.1 0.0 0.15 11.9 0.0 2.8 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.17 gi|257389054|ref|YP_003178827.1| - 0.0012 18.6 0.0 0.031 14.0 0.0 2.2 2 0 0 2 2 2 1 IstB-like ATP binding protein AAA_18 PF13238.6 gi|257389054|ref|YP_003178827.1| - 0.0024 18.4 0.0 0.0048 17.4 0.0 1.6 1 0 0 1 1 1 1 AAA domain RuvB_N PF05496.12 gi|257389054|ref|YP_003178827.1| - 0.0064 16.2 0.2 0.048 13.4 0.0 2.1 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_7 PF12775.7 gi|257389054|ref|YP_003178827.1| - 0.018 14.6 0.0 0.034 13.7 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region AAA_28 PF13521.6 gi|257389054|ref|YP_003178827.1| - 0.032 14.5 0.3 0.061 13.6 0.0 1.7 2 0 0 2 2 1 0 AAA domain AAA_25 PF13481.6 gi|257389054|ref|YP_003178827.1| - 0.034 13.7 0.0 0.078 12.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_11 PF13086.6 gi|257389054|ref|YP_003178827.1| - 0.043 13.6 0.0 0.073 12.9 0.0 1.3 1 0 0 1 1 1 0 AAA domain Sigma54_activat PF00158.26 gi|257389054|ref|YP_003178827.1| - 0.047 13.4 0.0 0.089 12.5 0.0 1.4 1 0 0 1 1 1 0 Sigma-54 interaction domain KTI12 PF08433.10 gi|257389054|ref|YP_003178827.1| - 0.053 13.0 0.0 0.11 12.0 0.0 1.4 1 0 0 1 1 1 0 Chromatin associated protein KTI12 TIP49 PF06068.13 gi|257389054|ref|YP_003178827.1| - 0.057 12.6 0.0 0.099 11.8 0.0 1.3 1 0 0 1 1 1 0 TIP49 P-loop domain AAA_33 PF13671.6 gi|257389054|ref|YP_003178827.1| - 0.12 12.5 0.0 0.26 11.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|257389054|ref|YP_003178827.1| - 0.16 11.7 0.0 0.26 11.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain TsaE PF02367.17 gi|257389054|ref|YP_003178827.1| - 0.16 12.0 0.0 0.28 11.2 0.0 1.3 1 0 0 1 1 1 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE RNA_helicase PF00910.22 gi|257389054|ref|YP_003178827.1| - 0.18 12.2 0.0 0.46 10.9 0.0 1.7 1 0 0 1 1 1 0 RNA helicase T2SSE PF00437.20 gi|257389054|ref|YP_003178827.1| - 0.18 10.8 0.0 0.3 10.1 0.0 1.2 1 0 0 1 1 1 0 Type II/IV secretion system protein PcrB PF01884.17 gi|257389055|ref|YP_003178828.1| - 1.8e-56 191.2 1.6 2.1e-56 190.9 1.6 1.0 1 0 0 1 1 1 1 PcrB family Arylsulfotrans PF05935.11 gi|257389055|ref|YP_003178828.1| - 0.06 12.2 0.0 0.1 11.4 0.0 1.3 1 0 0 1 1 1 0 Arylsulfotransferase (ASST) Trp_syntA PF00290.20 gi|257389055|ref|YP_003178828.1| - 0.091 11.6 0.3 0.53 9.1 0.1 2.0 2 0 0 2 2 2 0 Tryptophan synthase alpha chain Sun2_CC2 PF18580.1 gi|257389055|ref|YP_003178828.1| - 1 9.6 3.2 1.5 9.1 0.5 2.2 2 0 0 2 2 2 0 SUN2 coiled coil domain 2 NUDIX PF00293.28 gi|257389057|ref|YP_003178830.1| - 4.8e-14 52.5 0.1 7.5e-14 51.9 0.1 1.3 1 0 0 1 1 1 1 NUDIX domain Bac_luciferase PF00296.20 gi|257389058|ref|YP_003178831.1| - 0.00024 20.6 6.2 0.00039 20.0 6.2 1.4 1 1 0 1 1 1 1 Luciferase-like monooxygenase DAO PF01266.24 gi|257389059|ref|YP_003178832.1| - 2.5e-47 162.2 11.7 2.8e-47 162.0 11.7 1.0 1 0 0 1 1 1 1 FAD dependent oxidoreductase Pyr_redox_2 PF07992.14 gi|257389059|ref|YP_003178832.1| - 3.1e-07 29.9 0.4 0.00026 20.3 0.3 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|257389059|ref|YP_003178832.1| - 6.9e-07 29.4 1.8 1.6e-06 28.2 1.4 1.9 2 0 0 2 2 1 1 NAD(P)-binding Rossmann-like domain FAD_binding_2 PF00890.24 gi|257389059|ref|YP_003178832.1| - 2.9e-06 26.7 1.7 4e-06 26.2 1.7 1.2 1 0 0 1 1 1 1 FAD binding domain FAD_binding_3 PF01494.19 gi|257389059|ref|YP_003178832.1| - 0.00011 21.5 1.4 0.00011 21.5 1.4 1.9 2 1 0 2 2 2 1 FAD binding domain ApbA PF02558.16 gi|257389059|ref|YP_003178832.1| - 0.00017 21.2 0.3 0.00031 20.4 0.3 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA 3HCDH_N PF02737.18 gi|257389059|ref|YP_003178832.1| - 0.00034 20.5 0.2 0.00056 19.8 0.2 1.3 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HI0933_like PF03486.14 gi|257389059|ref|YP_003178832.1| - 0.00063 18.6 2.1 0.00064 18.5 0.9 1.5 2 0 0 2 2 2 1 HI0933-like protein UDPG_MGDP_dh_N PF03721.14 gi|257389059|ref|YP_003178832.1| - 0.00077 19.1 0.2 0.0013 18.3 0.2 1.3 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Pyr_redox PF00070.27 gi|257389059|ref|YP_003178832.1| - 0.0012 19.3 0.4 0.01 16.4 0.9 2.1 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Thi4 PF01946.17 gi|257389059|ref|YP_003178832.1| - 0.0014 17.9 0.2 0.0022 17.3 0.2 1.3 1 0 0 1 1 1 1 Thi4 family GIDA PF01134.22 gi|257389059|ref|YP_003178832.1| - 0.0077 15.4 0.9 0.013 14.6 0.9 1.4 1 0 0 1 1 1 1 Glucose inhibited division protein A NAD_binding_7 PF13241.6 gi|257389059|ref|YP_003178832.1| - 0.0081 16.6 0.4 0.018 15.5 0.4 1.7 1 1 0 1 1 1 1 Putative NAD(P)-binding 2-Hacid_dh_C PF02826.19 gi|257389059|ref|YP_003178832.1| - 0.024 14.0 0.2 0.048 13.0 0.2 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IlvN PF07991.12 gi|257389059|ref|YP_003178832.1| - 0.048 13.2 0.1 0.08 12.5 0.1 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain Toprim_3 PF13362.6 gi|257389059|ref|YP_003178832.1| - 0.056 13.8 0.2 0.22 11.9 0.1 2.1 1 1 0 1 1 1 0 Toprim domain NAD_Gly3P_dh_N PF01210.23 gi|257389059|ref|YP_003178832.1| - 0.057 13.4 0.2 0.097 12.6 0.2 1.3 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ThiF PF00899.21 gi|257389059|ref|YP_003178832.1| - 0.058 12.7 0.1 0.1 11.9 0.1 1.4 1 0 0 1 1 1 0 ThiF family FAD_oxidored PF12831.7 gi|257389059|ref|YP_003178832.1| - 0.067 12.5 3.3 0.1 11.9 3.3 1.5 1 1 0 1 1 1 0 FAD dependent oxidoreductase AlaDh_PNT_C PF01262.21 gi|257389059|ref|YP_003178832.1| - 0.085 12.1 3.3 0.14 11.4 3.3 1.3 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain NAD_binding_2 PF03446.15 gi|257389059|ref|YP_003178832.1| - 0.087 13.0 0.0 0.14 12.3 0.0 1.3 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Pyr_redox_3 PF13738.6 gi|257389059|ref|YP_003178832.1| - 0.1 11.8 0.1 0.15 11.2 0.1 1.2 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Ldh_1_N PF00056.23 gi|257389059|ref|YP_003178832.1| - 0.19 11.8 0.2 0.61 10.2 0.1 1.8 2 0 0 2 2 2 0 lactate/malate dehydrogenase, NAD binding domain HSP20 PF00011.21 gi|257389060|ref|YP_003178833.1| - 3.4e-09 36.8 0.0 4.4e-09 36.4 0.0 1.2 1 0 0 1 1 1 1 Hsp20/alpha crystallin family ArsA_HSP20 PF17886.1 gi|257389060|ref|YP_003178833.1| - 0.0016 17.9 0.1 0.0071 15.9 0.1 2.0 1 1 0 1 1 1 1 HSP20-like domain found in ArsA TF_Zn_Ribbon PF08271.12 gi|257389061|ref|YP_003178834.1| - 0.076 12.6 3.7 0.72 9.4 0.7 2.2 2 0 0 2 2 2 0 TFIIB zinc-binding DUF429 PF04250.13 gi|257389062|ref|YP_003178835.1| - 1.2e-10 41.6 3.5 2.4e-10 40.6 3.5 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF429) ABC_tran PF00005.27 gi|257389063|ref|YP_003178836.1| - 7.4e-29 101.0 0.0 2.3e-28 99.4 0.0 1.8 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.6 gi|257389063|ref|YP_003178836.1| - 3.8e-11 43.4 2.8 6e-06 26.3 0.0 2.5 2 1 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA PF00004.29 gi|257389063|ref|YP_003178836.1| - 0.0018 18.7 0.0 0.01 16.2 0.0 2.3 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_23 PF13476.6 gi|257389063|ref|YP_003178836.1| - 0.0034 17.9 0.0 0.005 17.4 0.0 1.4 1 0 0 1 1 1 1 AAA domain MeaB PF03308.16 gi|257389063|ref|YP_003178836.1| - 0.0051 15.8 0.1 0.0088 15.1 0.1 1.3 1 0 0 1 1 1 1 Methylmalonyl Co-A mutase-associated GTPase MeaB MukB PF04310.12 gi|257389063|ref|YP_003178836.1| - 0.0065 16.3 0.1 0.013 15.3 0.1 1.4 1 0 0 1 1 1 1 MukB N-terminal AAA_29 PF13555.6 gi|257389063|ref|YP_003178836.1| - 0.0072 16.0 0.2 0.02 14.6 0.3 1.7 2 0 0 2 2 2 1 P-loop containing region of AAA domain DUF4162 PF13732.6 gi|257389063|ref|YP_003178836.1| - 0.016 15.9 0.0 0.039 14.7 0.0 1.8 1 0 0 1 1 1 0 Domain of unknown function (DUF4162) AAA_16 PF13191.6 gi|257389063|ref|YP_003178836.1| - 0.017 15.5 1.4 0.036 14.4 0.7 2.0 1 1 1 2 2 2 0 AAA ATPase domain AAA_22 PF13401.6 gi|257389063|ref|YP_003178836.1| - 0.018 15.3 1.5 0.26 11.6 1.5 2.2 1 1 0 1 1 1 0 AAA domain SMC_N PF02463.19 gi|257389063|ref|YP_003178836.1| - 0.042 13.3 0.7 0.19 11.2 0.7 1.9 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA_30 PF13604.6 gi|257389063|ref|YP_003178836.1| - 0.048 13.4 2.4 0.18 11.5 0.0 2.4 2 1 0 2 2 2 0 AAA domain SRP54 PF00448.22 gi|257389063|ref|YP_003178836.1| - 0.07 12.7 0.0 0.13 11.8 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain NTPase_1 PF03266.15 gi|257389063|ref|YP_003178836.1| - 0.075 12.9 0.8 1.7 8.5 0.0 2.7 2 1 2 4 4 4 0 NTPase AAA_27 PF13514.6 gi|257389063|ref|YP_003178836.1| - 0.094 12.3 0.0 0.3 10.6 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_19 PF13245.6 gi|257389063|ref|YP_003178836.1| - 0.13 12.6 0.2 0.22 11.8 0.2 1.5 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|257389063|ref|YP_003178836.1| - 0.18 11.5 0.0 0.32 10.7 0.0 1.4 1 0 0 1 1 1 0 AAA domain HAD_2 PF13419.6 gi|257389065|ref|YP_003178838.1| - 5.8e-16 59.1 0.0 6.9e-16 58.8 0.0 1.1 1 0 0 1 1 1 1 Haloacid dehalogenase-like hydrolase Hydrolase_like PF13242.6 gi|257389065|ref|YP_003178838.1| - 4.3e-10 39.5 0.0 7.9e-10 38.7 0.0 1.5 1 0 0 1 1 1 1 HAD-hyrolase-like Hydrolase PF00702.26 gi|257389065|ref|YP_003178838.1| - 6.6e-06 26.6 1.7 6.1e-05 23.4 1.7 2.0 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|257389065|ref|YP_003178838.1| - 0.17 12.3 3.1 0.57 10.6 3.1 1.9 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase Radical_SAM PF04055.21 gi|257389067|ref|YP_003178840.1| - 4.4e-14 53.2 0.0 1.8e-13 51.2 0.0 2.2 1 1 0 1 1 1 1 Radical SAM superfamily HHH PF00633.23 gi|257389067|ref|YP_003178840.1| - 2.4e-06 27.1 0.1 1.1e-05 25.1 0.0 2.2 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_3 PF12836.7 gi|257389067|ref|YP_003178840.1| - 5.1e-05 23.5 0.0 0.00011 22.4 0.0 1.5 1 0 0 1 1 1 1 Helix-hairpin-helix motif PsbU PF06514.11 gi|257389067|ref|YP_003178840.1| - 0.0088 16.0 0.1 0.036 14.1 0.0 2.1 2 0 0 2 2 2 1 Photosystem II 12 kDa extrinsic protein (PsbU) LPG_synthase_TM PF03706.13 gi|257389068|ref|YP_003178841.1| - 2.1e-30 106.3 32.5 3.2e-30 105.7 32.5 1.3 1 0 0 1 1 1 1 Lysylphosphatidylglycerol synthase TM region Glycos_transf_2 PF00535.26 gi|257389068|ref|YP_003178841.1| - 4.9e-27 94.8 0.0 8.3e-27 94.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|257389068|ref|YP_003178841.1| - 1.9e-11 44.3 1.9 7.3e-10 39.1 0.2 2.6 2 0 0 2 2 2 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|257389068|ref|YP_003178841.1| - 0.0031 17.0 0.0 0.005 16.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_4 PF13704.6 gi|257389068|ref|YP_003178841.1| - 0.017 15.6 0.0 0.037 14.6 0.0 1.6 1 0 0 1 1 1 0 Glycosyl transferase family 2 Cyd_oper_YbgE PF09600.10 gi|257389068|ref|YP_003178841.1| - 1.4 9.4 8.6 0.49 10.8 0.6 3.3 2 2 1 3 3 3 0 Cyd operon protein YbgE (Cyd_oper_YbgE) TFIIB PF00382.19 gi|257389069|ref|YP_003178842.1| - 2.8e-38 129.8 0.8 5.1e-18 64.9 0.0 2.2 2 0 0 2 2 2 2 Transcription factor TFIIB repeat TF_Zn_Ribbon PF08271.12 gi|257389069|ref|YP_003178842.1| - 3.6e-16 58.4 5.5 5e-16 57.9 4.4 1.9 2 0 0 2 2 2 1 TFIIB zinc-binding OrfB_Zn_ribbon PF07282.11 gi|257389069|ref|YP_003178842.1| - 0.0024 17.8 1.2 0.0058 16.5 1.2 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain Anti-TRAP PF15777.5 gi|257389069|ref|YP_003178842.1| - 0.042 13.8 0.8 0.078 13.0 0.8 1.4 1 0 0 1 1 1 0 Tryptophan RNA-binding attenuator protein inhibitory protein Birna_VP3 PF01767.16 gi|257389069|ref|YP_003178842.1| - 0.047 13.8 0.3 1.3 9.1 0.0 2.7 2 1 0 2 2 2 0 Birnavirus VP3 protein Sigma70_r4 PF04545.16 gi|257389069|ref|YP_003178842.1| - 0.077 12.5 2.5 0.32 10.5 0.0 2.9 3 0 0 3 3 3 0 Sigma-70, region 4 A2L_zn_ribbon PF08792.10 gi|257389069|ref|YP_003178842.1| - 0.13 12.1 0.5 0.21 11.4 0.5 1.3 1 0 0 1 1 1 0 A2L zinc ribbon domain Cyclin_C PF02984.19 gi|257389069|ref|YP_003178842.1| - 0.18 11.9 0.0 0.97 9.5 0.0 2.0 2 0 0 2 2 2 0 Cyclin, C-terminal domain HTH_Tnp_ISL3 PF13542.6 gi|257389069|ref|YP_003178842.1| - 0.18 11.2 1.6 0.3 10.5 0.2 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 ABC_tran_Xtn PF12848.7 gi|257389069|ref|YP_003178842.1| - 0.19 11.8 2.4 0.36 10.9 0.7 2.3 2 0 0 2 2 2 0 ABC transporter Auto_anti-p27 PF06677.12 gi|257389069|ref|YP_003178842.1| - 0.44 10.7 1.6 0.8 9.9 1.6 1.4 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) Zn-ribbon_8 PF09723.10 gi|257389069|ref|YP_003178842.1| - 7.2 6.8 6.1 16 5.7 1.2 2.4 1 1 2 3 3 3 0 Zinc ribbon domain MCPsignal PF00015.21 gi|257389070|ref|YP_003178843.1| - 1.6e-49 168.0 50.4 2.4e-46 157.7 28.6 3.5 1 1 2 3 3 3 3 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF948 PF06103.11 gi|257389070|ref|YP_003178843.1| - 1.3e-05 25.3 32.2 0.057 13.7 4.9 4.8 2 2 2 4 4 4 2 Bacterial protein of unknown function (DUF948) Laminin_II PF06009.12 gi|257389070|ref|YP_003178843.1| - 1.4e-05 25.2 35.1 0.018 15.0 1.2 4.1 3 1 1 4 4 4 3 Laminin Domain II DUF1664 PF07889.12 gi|257389070|ref|YP_003178843.1| - 0.0085 16.1 29.8 0.48 10.5 0.9 4.1 2 2 2 4 4 4 2 Protein of unknown function (DUF1664) CorA PF01544.18 gi|257389070|ref|YP_003178843.1| - 0.0098 15.2 1.0 0.0098 15.2 1.0 2.2 2 0 0 2 2 2 1 CorA-like Mg2+ transporter protein Fib_alpha PF08702.10 gi|257389070|ref|YP_003178843.1| - 0.012 15.9 22.3 0.13 12.5 2.8 3.6 2 2 1 3 3 3 0 Fibrinogen alpha/beta chain family PUB PF09409.10 gi|257389070|ref|YP_003178843.1| - 0.017 15.0 0.0 0.088 12.8 0.0 2.2 2 0 0 2 2 2 0 PUB domain TPR_MLP1_2 PF07926.12 gi|257389070|ref|YP_003178843.1| - 0.066 13.3 36.6 0.091 12.8 5.3 3.1 2 1 1 3 3 3 0 TPR/MLP1/MLP2-like protein Syntaxin-6_N PF09177.11 gi|257389070|ref|YP_003178843.1| - 0.1 13.2 28.6 0.1 13.2 1.1 4.0 2 2 2 4 4 4 0 Syntaxin 6, N-terminal Phage_int_SAM_6 PF18644.1 gi|257389070|ref|YP_003178843.1| - 0.31 11.1 4.8 1.5 8.9 0.1 3.1 3 1 0 3 3 3 0 Phage integrase SAM-like domain Med30 PF11315.8 gi|257389070|ref|YP_003178843.1| - 0.4 10.9 11.8 2.9 8.1 4.0 2.8 1 1 2 3 3 3 0 Mediator complex subunit 30 Prominin PF05478.11 gi|257389070|ref|YP_003178843.1| - 0.65 7.9 15.5 0.082 10.9 7.3 2.0 1 1 1 2 2 2 0 Prominin Spc7 PF08317.11 gi|257389070|ref|YP_003178843.1| - 0.69 8.7 31.0 0.93 8.3 13.3 2.6 1 1 0 2 2 2 0 Spc7 kinetochore protein DUF3584 PF12128.8 gi|257389070|ref|YP_003178843.1| - 0.86 7.0 29.8 1.2 6.6 29.8 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) Cas_DxTHG PF09455.10 gi|257389070|ref|YP_003178843.1| - 1 8.9 5.4 6.2 6.3 5.4 2.0 1 1 0 1 1 1 0 CRISPR-associated (Cas) DxTHG family FlgN PF05130.12 gi|257389070|ref|YP_003178843.1| - 1.3 9.5 26.9 0.3 11.6 4.4 2.9 1 1 2 3 3 3 0 FlgN protein STAT_alpha PF01017.20 gi|257389070|ref|YP_003178843.1| - 1.5 8.7 11.6 0.83 9.5 3.8 3.0 1 1 1 2 2 2 0 STAT protein, all-alpha domain Sec34 PF04136.15 gi|257389070|ref|YP_003178843.1| - 1.6 8.6 19.0 1.4 8.8 0.4 4.2 3 1 0 4 4 4 0 Sec34-like family V_ATPase_I PF01496.19 gi|257389070|ref|YP_003178843.1| - 2 6.2 20.7 0.29 9.0 13.0 2.0 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family Goodbye PF17109.5 gi|257389070|ref|YP_003178843.1| - 2.6 8.5 15.6 48 4.4 4.8 4.5 2 2 1 4 4 4 0 fungal STAND N-terminal Goodbye domain Mod_r PF07200.13 gi|257389070|ref|YP_003178843.1| - 2.6 8.1 23.2 3.3 7.8 1.1 3.7 1 1 3 4 4 4 0 Modifier of rudimentary (Mod(r)) protein Spectrin PF00435.21 gi|257389070|ref|YP_003178843.1| - 3.6 8.1 23.0 4.3 7.9 1.7 4.1 2 2 2 4 4 4 0 Spectrin repeat Alanine_zipper PF11839.8 gi|257389070|ref|YP_003178843.1| - 5.2 7.5 51.6 0.41 11.1 9.4 5.3 2 2 2 4 4 3 0 Alanine-zipper, major outer membrane lipoprotein RmuC PF02646.16 gi|257389070|ref|YP_003178843.1| - 6.3 5.8 24.2 0.33 10.1 1.7 3.9 2 2 1 4 4 4 0 RmuC family COG5 PF10392.9 gi|257389070|ref|YP_003178843.1| - 6.5 6.9 17.2 16 5.7 0.2 4.0 3 1 1 4 4 4 0 Golgi transport complex subunit 5 Hc1 PF07432.13 gi|257389070|ref|YP_003178843.1| - 6.6 7.1 10.5 0.54 10.6 4.7 2.0 2 1 0 2 2 2 0 Histone H1-like protein Hc1 DUF3450 PF11932.8 gi|257389070|ref|YP_003178843.1| - 6.9 5.9 36.0 2.2 7.5 5.5 3.9 1 1 3 4 4 4 0 Protein of unknown function (DUF3450) Spidroin_MaSp PF11260.8 gi|257389070|ref|YP_003178843.1| - 8.2 6.8 17.1 2.4 8.5 0.2 3.7 3 1 1 4 4 4 0 Major ampullate spidroin 1 and 2 VPS38 PF17649.1 gi|257389070|ref|YP_003178843.1| - 8.7 5.1 14.5 1.6 7.6 7.2 2.5 2 1 0 2 2 2 0 Vacuolar protein sorting 38 Fzo_mitofusin PF04799.13 gi|257389070|ref|YP_003178843.1| - 9.2 5.8 22.0 1.3 8.6 0.2 4.0 2 2 2 4 4 4 0 fzo-like conserved region L31 PF09784.9 gi|257389070|ref|YP_003178843.1| - 9.4 6.7 9.8 30 5.1 0.2 3.7 2 1 0 3 3 3 0 Mitochondrial ribosomal protein L31 COG2 PF06148.11 gi|257389070|ref|YP_003178843.1| - 9.6 6.3 29.2 4.7 7.3 3.0 4.4 2 2 2 4 4 4 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF812 PF05667.11 gi|257389070|ref|YP_003178843.1| - 9.8 4.9 32.7 6.2 5.6 3.1 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF812) N6_N4_Mtase PF01555.18 gi|257389071|ref|YP_003178844.1| - 5.3e-33 114.7 0.0 7.9e-33 114.1 0.0 1.2 1 0 0 1 1 1 1 DNA methylase Methyltransf_11 PF08241.12 gi|257389071|ref|YP_003178844.1| - 1e-06 29.3 0.3 0.001 19.7 0.1 3.3 2 1 0 2 2 2 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|257389071|ref|YP_003178844.1| - 2.1e-05 25.2 0.3 2.4 8.9 0.0 3.5 3 1 0 3 3 3 3 Methyltransferase domain UPF0020 PF01170.18 gi|257389071|ref|YP_003178844.1| - 0.00023 20.9 0.1 0.38 10.4 0.0 2.5 2 1 0 2 2 2 2 Putative RNA methylase family UPF0020 MethyltransfD12 PF02086.15 gi|257389071|ref|YP_003178844.1| - 0.2 11.3 0.0 0.27 10.9 0.0 1.2 1 0 0 1 1 1 0 D12 class N6 adenine-specific DNA methyltransferase DHquinase_I PF01487.15 gi|257389072|ref|YP_003178845.1| - 5.4e-45 154.4 0.0 6.6e-45 154.1 0.0 1.0 1 0 0 1 1 1 1 Type I 3-dehydroquinase DZR PF12773.7 gi|257389073|ref|YP_003178846.1| - 0.0014 18.6 0.8 0.0019 18.2 0.8 1.2 1 0 0 1 1 1 1 Double zinc ribbon TM2 PF05154.16 gi|257389073|ref|YP_003178846.1| - 0.0046 17.2 0.1 0.0078 16.5 0.1 1.3 1 0 0 1 1 1 1 TM2 domain zinc_ribbon_2 PF13240.6 gi|257389073|ref|YP_003178846.1| - 0.027 14.2 0.6 0.053 13.3 0.6 1.5 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|257389073|ref|YP_003178846.1| - 0.036 14.8 0.0 0.044 14.5 0.0 1.2 1 0 0 1 1 1 0 zinc-ribbon family DHQS PF01959.16 gi|257389074|ref|YP_003178847.1| - 1.2e-142 475.0 1.0 1.4e-142 474.8 1.0 1.0 1 0 0 1 1 1 1 3-dehydroquinate synthase II QRPTase_C PF01729.19 gi|257389074|ref|YP_003178847.1| - 0.0013 18.5 0.3 0.014 15.2 0.1 2.2 2 0 0 2 2 2 1 Quinolinate phosphoribosyl transferase, C-terminal domain Hint PF01079.20 gi|257389074|ref|YP_003178847.1| - 0.0019 17.8 0.0 0.0067 16.0 0.0 1.7 1 1 0 2 2 2 1 Hint module TNT PF14021.6 gi|257389074|ref|YP_003178847.1| - 0.076 13.6 0.0 0.16 12.6 0.0 1.5 1 0 0 1 1 1 0 Tuberculosis necrotizing toxin DeoC PF01791.9 gi|257389075|ref|YP_003178848.1| - 2.4e-45 155.0 0.1 2.9e-45 154.7 0.1 1.1 1 0 0 1 1 1 1 DeoC/LacD family aldolase AP_endonuc_2 PF01261.24 gi|257389075|ref|YP_003178848.1| - 7.9e-05 22.2 0.2 0.00013 21.5 0.2 1.5 1 0 0 1 1 1 1 Xylose isomerase-like TIM barrel PucR PF07905.11 gi|257389075|ref|YP_003178848.1| - 0.0078 16.5 0.0 0.35 11.2 0.0 2.4 2 0 0 2 2 2 1 Purine catabolism regulatory protein-like family DUF561 PF04481.12 gi|257389075|ref|YP_003178848.1| - 0.07 12.3 0.0 0.13 11.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF561) ThiG PF05690.14 gi|257389075|ref|YP_003178848.1| - 0.39 10.0 3.7 0.15 11.3 0.6 1.9 2 0 0 2 2 2 0 Thiazole biosynthesis protein ThiG Trp_syntA PF00290.20 gi|257389076|ref|YP_003178849.1| - 3.8e-89 298.0 0.0 4.5e-89 297.7 0.0 1.0 1 0 0 1 1 1 1 Tryptophan synthase alpha chain His_biosynth PF00977.21 gi|257389076|ref|YP_003178849.1| - 0.0001 21.8 0.1 0.00019 21.0 0.1 1.4 1 0 0 1 1 1 1 Histidine biosynthesis protein PcrB PF01884.17 gi|257389076|ref|YP_003178849.1| - 0.00018 21.1 0.6 0.014 14.9 0.3 2.2 2 0 0 2 2 2 2 PcrB family IGPS PF00218.21 gi|257389076|ref|YP_003178849.1| - 0.15 11.2 0.0 0.26 10.4 0.0 1.3 1 0 0 1 1 1 0 Indole-3-glycerol phosphate synthase PALP PF00291.25 gi|257389077|ref|YP_003178850.1| - 1.4e-36 126.5 0.6 1.9e-36 126.0 0.6 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme IGPS PF00218.21 gi|257389078|ref|YP_003178851.1| - 3.6e-67 226.2 0.0 4.4e-67 225.9 0.0 1.0 1 0 0 1 1 1 1 Indole-3-glycerol phosphate synthase NanE PF04131.14 gi|257389078|ref|YP_003178851.1| - 3.2e-06 26.5 0.5 8.7e-06 25.1 0.4 1.9 1 1 1 2 2 2 1 Putative N-acetylmannosamine-6-phosphate epimerase FMN_dh PF01070.18 gi|257389078|ref|YP_003178851.1| - 4.8e-06 25.8 2.8 2.3e-05 23.6 1.7 2.0 2 0 0 2 2 2 1 FMN-dependent dehydrogenase QRPTase_C PF01729.19 gi|257389078|ref|YP_003178851.1| - 2.7e-05 24.0 0.0 6.5e-05 22.8 0.0 1.6 1 0 0 1 1 1 1 Quinolinate phosphoribosyl transferase, C-terminal domain His_biosynth PF00977.21 gi|257389078|ref|YP_003178851.1| - 0.011 15.2 0.0 0.065 12.7 0.0 2.1 2 1 0 2 2 2 0 Histidine biosynthesis protein ThiG PF05690.14 gi|257389078|ref|YP_003178851.1| - 0.016 14.5 4.1 0.2 11.0 1.4 2.9 1 1 2 3 3 3 0 Thiazole biosynthesis protein ThiG K-cyclin_vir_C PF09080.10 gi|257389078|ref|YP_003178851.1| - 0.019 15.3 0.3 0.15 12.5 0.0 2.6 2 1 1 3 3 3 0 K cyclin, C terminal IMPDH PF00478.25 gi|257389078|ref|YP_003178851.1| - 0.15 11.0 1.4 0.29 10.1 0.0 2.0 3 0 0 3 3 3 0 IMP dehydrogenase / GMP reductase domain DNA_binding_1 PF01035.20 gi|257389079|ref|YP_003178852.1| - 1.6e-07 31.4 0.0 2.4e-07 30.8 0.0 1.3 1 0 0 1 1 1 1 6-O-methylguanine DNA methyltransferase, DNA binding domain Nucleolin_bd PF16725.5 gi|257389079|ref|YP_003178852.1| - 0.016 14.9 0.1 0.027 14.1 0.1 1.3 1 0 0 1 1 1 0 Nucleolin binding domain UPF0175 PF03683.13 gi|257389080|ref|YP_003178853.1| - 2.1e-10 40.2 1.8 2.3e-10 40.0 1.3 1.3 1 1 0 1 1 1 1 Uncharacterised protein family (UPF0175) NYN_YacP PF05991.11 gi|257389081|ref|YP_003178854.1| - 0.0035 17.3 0.3 0.0046 16.9 0.3 1.3 1 0 0 1 1 1 1 YacP-like NYN domain PLDc_N PF13396.6 gi|257389082|ref|YP_003178855.1| - 8.1e-07 28.9 3.3 8.1e-07 28.9 3.3 1.8 2 0 0 2 2 2 1 Phospholipase_D-nuclease N-terminal GtrA PF04138.14 gi|257389082|ref|YP_003178855.1| - 0.0017 18.6 0.8 0.0019 18.4 0.8 1.1 1 0 0 1 1 1 1 GtrA-like protein XK-related PF09815.9 gi|257389082|ref|YP_003178855.1| - 0.0037 16.4 1.4 0.0044 16.1 1.4 1.0 1 0 0 1 1 1 1 XK-related protein PMP1_2 PF08114.11 gi|257389082|ref|YP_003178855.1| - 0.01 15.5 6.0 0.016 14.9 0.1 2.1 2 0 0 2 2 2 0 ATPase proteolipid family Oxidored_q4 PF00507.19 gi|257389082|ref|YP_003178855.1| - 0.079 13.1 2.9 0.1 12.8 2.9 1.1 1 0 0 1 1 1 0 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 Phage_holin_3_6 PF07332.11 gi|257389082|ref|YP_003178855.1| - 0.088 12.8 3.7 0.11 12.5 3.7 1.1 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III LapA_dom PF06305.11 gi|257389082|ref|YP_003178855.1| - 0.23 11.3 4.3 1.4 8.8 0.5 2.1 2 0 0 2 2 2 0 Lipopolysaccharide assembly protein A domain tRNA-synt_2 PF00152.20 gi|257389083|ref|YP_003178856.1| - 1.6e-84 283.7 0.0 1.9e-84 283.5 0.0 1.0 1 0 0 1 1 1 1 tRNA synthetases class II (D, K and N) tRNA_anti-codon PF01336.25 gi|257389083|ref|YP_003178856.1| - 1.1e-13 51.0 0.3 1.9e-13 50.2 0.3 1.4 1 0 0 1 1 1 1 OB-fold nucleic acid binding domain tRNA-synt_2d PF01409.20 gi|257389083|ref|YP_003178856.1| - 0.0092 15.5 0.3 0.35 10.3 0.1 2.8 3 0 0 3 3 3 1 tRNA synthetases class II core domain (F) Med30 PF11315.8 gi|257389083|ref|YP_003178856.1| - 0.064 13.5 0.0 0.31 11.2 0.0 1.9 2 0 0 2 2 2 0 Mediator complex subunit 30 Glyco_transf_21 PF13506.6 gi|257389084|ref|YP_003178857.1| - 0.041 13.4 0.1 0.12 11.9 0.0 1.7 2 0 0 2 2 2 0 Glycosyl transferase family 21 MFS_1 PF07690.16 gi|257389085|ref|YP_003178858.1| - 8.7e-36 123.6 70.2 5e-30 104.6 42.7 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|257389085|ref|YP_003178858.1| - 0.00049 19.1 17.2 0.005 15.8 10.0 2.1 1 1 1 2 2 2 2 MFS_1 like family MFS_4 PF06779.14 gi|257389085|ref|YP_003178858.1| - 0.098 11.9 38.9 0.14 11.4 38.9 1.1 1 0 0 1 1 1 0 Uncharacterised MFS-type transporter YbfB Asparaginase_C PF17763.1 gi|257389085|ref|YP_003178858.1| - 0.15 12.3 1.1 0.32 11.2 0.3 1.9 2 0 0 2 2 2 0 Glutaminase/Asparaginase C-terminal domain IGPS PF00218.21 gi|257389085|ref|YP_003178858.1| - 0.18 10.9 0.0 0.29 10.3 0.0 1.2 1 0 0 1 1 1 0 Indole-3-glycerol phosphate synthase DUF1451 PF07295.11 gi|257389086|ref|YP_003178859.1| - 0.0035 17.4 0.2 0.0042 17.1 0.2 1.1 1 0 0 1 1 1 1 Zinc-ribbon containing domain DZR PF12773.7 gi|257389086|ref|YP_003178859.1| - 0.011 15.7 0.4 0.014 15.4 0.4 1.2 1 0 0 1 1 1 0 Double zinc ribbon Nudix_N_2 PF14803.6 gi|257389086|ref|YP_003178859.1| - 0.014 15.3 0.7 0.29 11.1 0.1 2.2 2 0 0 2 2 2 0 Nudix N-terminal TF_Zn_Ribbon PF08271.12 gi|257389086|ref|YP_003178859.1| - 0.019 14.5 2.6 1.5 8.4 0.3 2.1 1 1 1 2 2 2 0 TFIIB zinc-binding ADD_ATRX PF17981.1 gi|257389086|ref|YP_003178859.1| - 0.054 13.4 1.0 0.075 12.9 1.0 1.5 1 1 0 1 1 1 0 Cysteine Rich ADD domain Prok-RING_1 PF14446.6 gi|257389086|ref|YP_003178859.1| - 0.061 13.3 1.5 0.1 12.5 1.5 1.4 1 1 0 1 1 1 0 Prokaryotic RING finger family 1 HypA PF01155.19 gi|257389086|ref|YP_003178859.1| - 0.063 13.3 0.4 0.065 13.3 0.4 1.1 1 0 0 1 1 1 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zn-ribbon_8 PF09723.10 gi|257389086|ref|YP_003178859.1| - 0.071 13.2 2.2 0.11 12.6 2.2 1.4 1 1 0 1 1 1 0 Zinc ribbon domain Aldo_ket_red PF00248.21 gi|257389087|ref|YP_003178860.1| - 9.2e-29 100.5 0.0 5.2e-25 88.2 0.0 2.1 2 0 0 2 2 2 2 Aldo/keto reductase family DUF3530 PF12048.8 gi|257389087|ref|YP_003178860.1| - 0.045 13.2 0.0 0.2 11.0 0.0 1.8 2 0 0 2 2 2 0 Protein of unknown function (DUF3530) DUF2322 PF10084.9 gi|257389087|ref|YP_003178860.1| - 0.053 13.6 0.0 0.1 12.6 0.0 1.5 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2322) DHH PF01368.20 gi|257389088|ref|YP_003178861.1| - 5.3e-12 45.9 0.0 8.8e-12 45.2 0.0 1.4 1 0 0 1 1 1 1 DHH family DHHA1 PF02272.19 gi|257389088|ref|YP_003178861.1| - 5e-11 43.2 0.4 1.1e-10 42.1 0.4 1.5 1 0 0 1 1 1 1 DHHA1 domain DUF296 PF03479.15 gi|257389088|ref|YP_003178861.1| - 0.018 15.4 0.1 0.12 12.8 0.0 2.1 2 0 0 2 2 2 0 Plants and Prokaryotes Conserved (PCC) domain NAD_binding_10 PF13460.6 gi|257389089|ref|YP_003178862.1| - 1e-18 67.9 0.8 1.5e-18 67.3 0.8 1.2 1 0 0 1 1 1 1 NAD(P)H-binding Epimerase PF01370.21 gi|257389089|ref|YP_003178862.1| - 5e-18 65.5 0.0 6.2e-18 65.1 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.19 gi|257389089|ref|YP_003178862.1| - 3.1e-09 36.3 0.0 1.1e-08 34.5 0.0 1.7 1 1 0 2 2 2 1 3-beta hydroxysteroid dehydrogenase/isomerase family TrkA_N PF02254.18 gi|257389089|ref|YP_003178862.1| - 2.3e-08 34.3 1.1 4.9e-08 33.2 0.6 1.8 2 0 0 2 2 2 1 TrkA-N domain F420_oxidored PF03807.17 gi|257389089|ref|YP_003178862.1| - 6e-08 33.2 0.1 1.3e-07 32.0 0.1 1.6 1 0 0 1 1 1 1 NADP oxidoreductase coenzyme F420-dependent GDP_Man_Dehyd PF16363.5 gi|257389089|ref|YP_003178862.1| - 2.2e-05 24.0 0.0 5e-05 22.9 0.0 1.6 1 1 0 1 1 1 1 GDP-mannose 4,6 dehydratase UDPG_MGDP_dh_N PF03721.14 gi|257389089|ref|YP_003178862.1| - 3.3e-05 23.6 0.1 5.9e-05 22.7 0.1 1.4 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ApbA PF02558.16 gi|257389089|ref|YP_003178862.1| - 4.2e-05 23.2 0.1 7e-05 22.5 0.1 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA RmlD_sub_bind PF04321.17 gi|257389089|ref|YP_003178862.1| - 0.0006 19.0 0.2 0.0031 16.6 0.2 2.1 1 1 0 1 1 1 1 RmlD substrate binding domain NAD_binding_2 PF03446.15 gi|257389089|ref|YP_003178862.1| - 0.00083 19.6 0.0 0.0015 18.7 0.0 1.5 1 0 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase GFO_IDH_MocA PF01408.22 gi|257389089|ref|YP_003178862.1| - 0.0063 17.3 0.1 0.011 16.6 0.1 1.4 1 0 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold DUF1731 PF08338.11 gi|257389089|ref|YP_003178862.1| - 0.0065 16.3 0.0 0.015 15.1 0.0 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1731) NmrA PF05368.13 gi|257389089|ref|YP_003178862.1| - 0.019 14.5 0.4 0.028 14.0 0.4 1.2 1 0 0 1 1 1 0 NmrA-like family NAD_Gly3P_dh_N PF01210.23 gi|257389089|ref|YP_003178862.1| - 0.025 14.6 0.0 0.041 13.9 0.0 1.3 1 0 0 1 1 1 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Rossmann-like PF10727.9 gi|257389089|ref|YP_003178862.1| - 0.027 14.4 0.5 0.05 13.5 0.5 1.5 1 0 0 1 1 1 0 Rossmann-like domain IlvN PF07991.12 gi|257389089|ref|YP_003178862.1| - 0.028 14.0 0.1 0.042 13.4 0.1 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain 3HCDH_N PF02737.18 gi|257389089|ref|YP_003178862.1| - 0.029 14.2 0.1 0.084 12.8 0.2 1.7 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AlaDh_PNT_C PF01262.21 gi|257389089|ref|YP_003178862.1| - 0.04 13.2 1.8 0.059 12.7 1.8 1.2 1 0 0 1 1 1 0 Alanine dehydrogenase/PNT, C-terminal domain Pyr_redox_2 PF07992.14 gi|257389089|ref|YP_003178862.1| - 0.044 13.0 0.3 0.067 12.4 0.3 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Sacchrp_dh_NADP PF03435.18 gi|257389089|ref|YP_003178862.1| - 0.048 13.9 0.3 0.093 13.0 0.3 1.5 1 0 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain 2-Hacid_dh_C PF02826.19 gi|257389089|ref|YP_003178862.1| - 0.059 12.7 0.0 0.11 11.9 0.0 1.4 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_3 PF03447.16 gi|257389089|ref|YP_003178862.1| - 0.068 13.8 0.5 0.14 12.8 0.5 1.5 1 0 0 1 1 1 0 Homoserine dehydrogenase, NAD binding domain adh_short PF00106.25 gi|257389089|ref|YP_003178862.1| - 0.083 12.3 1.0 0.17 11.3 0.3 1.7 1 1 1 2 2 2 0 short chain dehydrogenase DAO PF01266.24 gi|257389089|ref|YP_003178862.1| - 0.1 12.1 3.7 0.14 11.7 3.7 1.4 1 1 0 1 1 1 0 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|257389089|ref|YP_003178862.1| - 0.16 12.6 0.2 0.39 11.3 0.2 1.7 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase Methyltransf_11 PF08241.12 gi|257389089|ref|YP_003178862.1| - 0.26 12.0 1.7 0.44 11.2 0.3 2.0 3 0 0 3 3 1 0 Methyltransferase domain adh_short_C2 PF13561.6 gi|257389089|ref|YP_003178862.1| - 0.34 10.4 3.1 0.31 10.6 1.2 1.8 2 0 0 2 2 2 0 Enoyl-(Acyl carrier protein) reductase LAMTOR PF15454.6 gi|257389091|ref|YP_003178864.1| - 0.14 12.8 0.0 1.1 9.9 0.0 2.3 2 0 0 2 2 2 0 Late endosomal/lysosomal adaptor and MAPK and MTOR activator SSP160 PF06933.11 gi|257389091|ref|YP_003178864.1| - 1.8 6.7 4.8 3 5.9 4.8 1.2 1 0 0 1 1 1 0 Special lobe-specific silk protein SSP160 DraK_HK_N PF18092.1 gi|257389093|ref|YP_003178866.1| - 0.017 15.6 0.7 0.028 14.8 0.7 1.4 1 0 0 1 1 1 0 DraK Histidine Kinase N-terminal domain T2SSF PF00482.23 gi|257389095|ref|YP_003178868.1| - 0.00059 19.8 1.4 0.05 13.6 1.1 2.8 2 0 0 2 2 2 2 Type II secretion system (T2SS), protein F DUF3318 PF11780.8 gi|257389095|ref|YP_003178868.1| - 1.2 9.1 10.1 0.3 11.0 0.6 2.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3318) T2SSE PF00437.20 gi|257389096|ref|YP_003178869.1| - 2.6e-30 105.4 0.0 4.1e-30 104.8 0.0 1.2 1 0 0 1 1 1 1 Type II/IV secretion system protein AAA_16 PF13191.6 gi|257389096|ref|YP_003178869.1| - 0.00037 20.9 0.4 0.00037 20.9 0.4 2.3 2 1 0 2 2 2 1 AAA ATPase domain AAA_29 PF13555.6 gi|257389096|ref|YP_003178869.1| - 0.0014 18.3 0.0 0.0073 16.0 0.0 2.1 2 0 0 2 2 2 1 P-loop containing region of AAA domain ABC_tran PF00005.27 gi|257389096|ref|YP_003178869.1| - 0.0083 16.6 0.0 0.017 15.6 0.0 1.6 1 0 0 1 1 1 1 ABC transporter cobW PF02492.19 gi|257389096|ref|YP_003178869.1| - 0.014 15.0 0.0 0.022 14.3 0.0 1.3 1 0 0 1 1 1 0 CobW/HypB/UreG, nucleotide-binding domain AAA_25 PF13481.6 gi|257389096|ref|YP_003178869.1| - 0.018 14.6 0.2 0.074 12.6 0.2 2.1 1 0 0 1 1 1 0 AAA domain AAA_33 PF13671.6 gi|257389096|ref|YP_003178869.1| - 0.042 14.0 0.6 1.4 9.1 0.0 2.8 3 0 0 3 3 3 0 AAA domain AAA_23 PF13476.6 gi|257389096|ref|YP_003178869.1| - 0.076 13.5 0.0 0.14 12.7 0.0 1.3 1 0 0 1 1 1 0 AAA domain Zeta_toxin PF06414.12 gi|257389096|ref|YP_003178869.1| - 0.11 11.8 0.0 0.29 10.4 0.0 1.7 1 0 0 1 1 1 0 Zeta toxin AAA PF00004.29 gi|257389096|ref|YP_003178869.1| - 0.12 12.8 0.2 0.83 10.1 0.0 2.3 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_7 PF12775.7 gi|257389096|ref|YP_003178869.1| - 0.2 11.1 0.0 0.31 10.5 0.0 1.2 1 0 0 1 1 1 0 P-loop containing dynein motor region Polyhedrin PF00738.18 gi|257389097|ref|YP_003178870.1| - 0.098 12.0 0.0 0.13 11.6 0.0 1.1 1 0 0 1 1 1 0 Polyhedrin XhlA PF10779.9 gi|257389098|ref|YP_003178871.1| - 0.0003 20.9 0.7 0.0027 17.9 0.1 2.1 1 1 1 2 2 2 1 Haemolysin XhlA Spectrin PF00435.21 gi|257389098|ref|YP_003178871.1| - 0.0044 17.5 1.1 0.0067 16.9 1.1 1.3 1 0 0 1 1 1 1 Spectrin repeat CENP-F_leu_zip PF10473.9 gi|257389098|ref|YP_003178871.1| - 0.0092 16.0 0.6 0.015 15.3 0.6 1.3 1 0 0 1 1 1 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Tropomyosin_1 PF12718.7 gi|257389098|ref|YP_003178871.1| - 0.011 15.9 4.4 0.02 15.0 4.4 1.5 1 1 0 1 1 1 0 Tropomyosin like BLOC1_2 PF10046.9 gi|257389098|ref|YP_003178871.1| - 0.013 15.8 0.2 0.018 15.3 0.2 1.2 1 0 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 ADIP PF11559.8 gi|257389098|ref|YP_003178871.1| - 0.017 15.2 0.7 0.023 14.8 0.7 1.2 1 0 0 1 1 1 0 Afadin- and alpha -actinin-Binding TolA_bind_tri PF16331.5 gi|257389098|ref|YP_003178871.1| - 0.026 14.6 3.1 0.026 14.6 3.1 2.2 1 1 1 2 2 2 0 TolA binding protein trimerisation DUF1664 PF07889.12 gi|257389098|ref|YP_003178871.1| - 0.03 14.3 0.2 0.044 13.8 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) DUF3584 PF12128.8 gi|257389098|ref|YP_003178871.1| - 0.032 11.8 4.0 0.037 11.5 4.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3584) DUF2802 PF10975.8 gi|257389098|ref|YP_003178871.1| - 0.032 14.3 3.5 0.063 13.4 0.4 2.6 2 1 1 3 3 3 0 Protein of unknown function (DUF2802) Lebercilin PF15619.6 gi|257389098|ref|YP_003178871.1| - 0.037 13.7 5.4 0.1 12.2 2.1 2.0 1 1 1 2 2 2 0 Ciliary protein causing Leber congenital amaurosis disease Phage_GP20 PF06810.11 gi|257389098|ref|YP_003178871.1| - 0.037 13.8 0.3 0.052 13.4 0.3 1.2 1 0 0 1 1 1 0 Phage minor structural protein GP20 Tropomyosin PF00261.20 gi|257389098|ref|YP_003178871.1| - 0.039 13.3 7.3 0.09 12.1 7.3 1.5 1 1 0 1 1 1 0 Tropomyosin HOOK PF05622.12 gi|257389098|ref|YP_003178871.1| - 0.04 12.1 1.7 0.047 11.8 1.7 1.1 1 0 0 1 1 1 0 HOOK protein Fmp27_WPPW PF10359.9 gi|257389098|ref|YP_003178871.1| - 0.045 12.6 0.1 0.05 12.5 0.1 1.1 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain Herpes_UL25 PF01499.16 gi|257389098|ref|YP_003178871.1| - 0.066 11.7 2.7 0.078 11.5 2.7 1.2 1 0 0 1 1 1 0 Herpesvirus UL25 family Rootletin PF15035.6 gi|257389098|ref|YP_003178871.1| - 0.068 13.2 3.8 0.09 12.8 3.8 1.1 1 0 0 1 1 1 0 Ciliary rootlet component, centrosome cohesion SHE3 PF17078.5 gi|257389098|ref|YP_003178871.1| - 0.07 12.8 0.3 0.093 12.4 0.3 1.2 1 0 0 1 1 1 0 SWI5-dependent HO expression protein 3 DASH_Spc19 PF08287.11 gi|257389098|ref|YP_003178871.1| - 0.087 12.7 1.9 0.14 12.1 1.4 1.6 1 1 0 1 1 1 0 Spc19 DUF4407 PF14362.6 gi|257389098|ref|YP_003178871.1| - 0.1 11.9 4.2 0.12 11.7 4.2 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) Prefoldin_2 PF01920.20 gi|257389098|ref|YP_003178871.1| - 0.12 12.4 1.2 1.8 8.6 0.7 2.3 2 1 0 2 2 2 0 Prefoldin subunit DUF3829 PF12889.7 gi|257389098|ref|YP_003178871.1| - 0.12 11.8 0.0 0.16 11.4 0.0 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3829) DUF5082 PF16888.5 gi|257389098|ref|YP_003178871.1| - 0.13 12.6 0.7 0.27 11.5 0.5 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF5082) TPR_MLP1_2 PF07926.12 gi|257389098|ref|YP_003178871.1| - 0.14 12.3 4.5 1.2 9.3 1.9 2.0 1 1 1 2 2 2 0 TPR/MLP1/MLP2-like protein ERM PF00769.19 gi|257389098|ref|YP_003178871.1| - 0.15 11.8 4.1 0.19 11.5 4.1 1.1 1 0 0 1 1 1 0 Ezrin/radixin/moesin family FlaC_arch PF05377.11 gi|257389098|ref|YP_003178871.1| - 0.18 12.2 0.4 0.79 10.2 0.4 2.1 1 1 0 1 1 1 0 Flagella accessory protein C (FlaC) HSBP1 PF06825.12 gi|257389098|ref|YP_003178871.1| - 0.19 11.6 2.1 2.7 7.9 0.7 2.8 2 1 1 3 3 3 0 Heat shock factor binding protein 1 Syntaxin-6_N PF09177.11 gi|257389098|ref|YP_003178871.1| - 0.21 12.2 2.2 0.56 10.8 2.1 1.8 1 1 1 2 2 2 0 Syntaxin 6, N-terminal ABC_tran_CTD PF16326.5 gi|257389098|ref|YP_003178871.1| - 0.44 10.8 3.9 1.2 9.5 3.0 1.9 1 1 1 2 2 2 0 ABC transporter C-terminal domain SlyX PF04102.12 gi|257389098|ref|YP_003178871.1| - 0.45 11.2 7.7 1.8 9.2 4.0 2.9 1 1 0 2 2 2 0 SlyX YqjK PF13997.6 gi|257389098|ref|YP_003178871.1| - 0.5 10.7 5.9 0.16 12.2 1.5 2.4 1 1 2 3 3 3 0 YqjK-like protein DegS PF05384.11 gi|257389098|ref|YP_003178871.1| - 0.74 9.3 5.3 0.18 11.3 1.0 1.9 1 1 1 2 2 2 0 Sensor protein DegS DivIC PF04977.15 gi|257389098|ref|YP_003178871.1| - 0.86 9.4 3.1 1.4 8.7 2.6 1.7 1 1 0 1 1 1 0 Septum formation initiator CASP_C PF08172.12 gi|257389098|ref|YP_003178871.1| - 1.1 8.5 4.2 2.6 7.3 1.8 2.0 2 0 0 2 2 2 0 CASP C terminal GST_C_2 PF13410.6 gi|257389098|ref|YP_003178871.1| - 1.2 9.2 3.7 7.3 6.7 0.0 3.0 2 1 0 2 2 2 0 Glutathione S-transferase, C-terminal domain CENP-Q PF13094.6 gi|257389098|ref|YP_003178871.1| - 3.8 7.7 10.1 11 6.1 10.1 1.8 1 1 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit FUSC PF04632.12 gi|257389098|ref|YP_003178871.1| - 6.5 5.2 10.1 8.3 4.8 10.1 1.1 1 0 0 1 1 1 0 Fusaric acid resistance protein family Tubulin PF00091.25 gi|257389099|ref|YP_003178872.1| - 5.7e-27 95.2 0.1 9.5e-27 94.5 0.1 1.4 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain Tubulin_2 PF13809.6 gi|257389099|ref|YP_003178872.1| - 0.0053 16.0 0.8 0.02 14.1 0.2 2.1 3 0 0 3 3 3 1 Tubulin like Cementoin PF10511.9 gi|257389099|ref|YP_003178872.1| - 7 7.1 5.8 1.1 9.6 1.7 1.8 2 0 0 2 2 2 0 Trappin protein transglutaminase binding domain Phosphodiest PF01663.22 gi|257389100|ref|YP_003178873.1| - 2.2e-58 198.6 1.0 2.5e-58 198.4 1.0 1.0 1 0 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Sulfatase PF00884.23 gi|257389100|ref|YP_003178873.1| - 0.0098 15.3 3.3 0.021 14.2 0.7 2.3 2 0 0 2 2 2 1 Sulfatase Pyrophosphatase PF00719.19 gi|257389102|ref|YP_003178875.1| - 9.1e-51 171.8 1.2 1e-50 171.7 1.2 1.0 1 0 0 1 1 1 1 Inorganic pyrophosphatase PadR PF03551.14 gi|257389103|ref|YP_003178876.1| - 1.8e-17 63.1 0.4 2.5e-17 62.6 0.4 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family DUF1495 PF07381.11 gi|257389103|ref|YP_003178876.1| - 0.002 17.9 0.0 0.0039 17.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain (DUF1495) HTH_27 PF13463.6 gi|257389103|ref|YP_003178876.1| - 0.0022 18.4 0.0 0.004 17.6 0.0 1.6 2 0 0 2 2 2 1 Winged helix DNA-binding domain RTP PF02334.16 gi|257389103|ref|YP_003178876.1| - 0.035 14.7 0.0 0.051 14.2 0.0 1.3 1 0 0 1 1 1 0 Replication terminator protein HTH_45 PF14947.6 gi|257389103|ref|YP_003178876.1| - 0.046 13.7 0.0 0.071 13.1 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix SMC_N PF02463.19 gi|257389103|ref|YP_003178876.1| - 0.048 13.1 0.0 0.061 12.8 0.0 1.2 1 0 0 1 1 1 0 RecF/RecN/SMC N terminal domain Adeno_E4 PF05385.11 gi|257389104|ref|YP_003178877.1| - 0.046 13.8 1.4 0.13 12.4 0.6 2.0 2 0 0 2 2 2 0 Mastadenovirus early E4 13 kDa protein Phage_int_SAM_4 PF13495.6 gi|257389104|ref|YP_003178877.1| - 0.16 12.5 0.0 0.26 11.8 0.0 1.3 1 0 0 1 1 1 0 Phage integrase, N-terminal SAM-like domain RVT_3 PF13456.6 gi|257389105|ref|YP_003178878.1| - 4.7e-26 91.0 0.0 8.2e-26 90.2 0.0 1.4 2 0 0 2 2 2 1 Reverse transcriptase-like RNase_H PF00075.24 gi|257389105|ref|YP_003178878.1| - 1.1e-09 38.6 0.0 2.5e-09 37.4 0.0 1.6 1 1 0 1 1 1 1 RNase H TrmB PF01978.19 gi|257389106|ref|YP_003178879.1| - 0.065 13.1 0.0 0.17 11.8 0.0 1.8 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB GntR PF00392.21 gi|257389106|ref|YP_003178879.1| - 0.12 12.0 0.0 0.57 9.9 0.0 2.1 2 0 0 2 2 2 0 Bacterial regulatory proteins, gntR family RDD PF06271.12 gi|257389108|ref|YP_003178881.1| - 1.6e-22 80.2 6.2 1.9e-22 80.0 6.2 1.0 1 0 0 1 1 1 1 RDD family BTP PF05232.12 gi|257389108|ref|YP_003178881.1| - 0.4 10.8 4.5 0.8 9.8 4.5 1.5 1 0 0 1 1 1 0 Chlorhexidine efflux transporter TMEM215 PF15746.5 gi|257389108|ref|YP_003178881.1| - 2.9 7.3 4.3 5.1 6.5 4.3 1.3 1 0 0 1 1 1 0 TMEM215 family NUDIX PF00293.28 gi|257389109|ref|YP_003178882.1| - 1.6e-18 67.0 0.4 1.9e-18 66.8 0.4 1.0 1 0 0 1 1 1 1 NUDIX domain AAA_17 PF13207.6 gi|257389109|ref|YP_003178882.1| - 0.02 15.3 0.0 0.037 14.5 0.0 1.5 1 1 1 2 2 2 0 AAA domain Ribosomal_S10 PF00338.22 gi|257389111|ref|YP_003178884.1| - 2.5e-13 50.1 0.0 2.8e-13 49.9 0.0 1.1 1 0 0 1 1 1 1 Ribosomal protein S10p/S20e SecA_PP_bind PF01043.20 gi|257389111|ref|YP_003178884.1| - 0.0098 16.5 0.1 0.015 15.9 0.1 1.2 1 0 0 1 1 1 1 SecA preprotein cross-linking domain Aldo_ket_red PF00248.21 gi|257389112|ref|YP_003178885.1| - 5.3e-72 242.5 0.0 6e-72 242.3 0.0 1.0 1 0 0 1 1 1 1 Aldo/keto reductase family HhH-GPD PF00730.25 gi|257389114|ref|YP_003178887.1| - 1.7e-16 60.6 0.0 2.3e-16 60.2 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein EndIII_4Fe-2S PF10576.9 gi|257389114|ref|YP_003178887.1| - 7.7e-05 22.9 7.8 0.00019 21.7 7.8 1.7 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH PF00633.23 gi|257389114|ref|YP_003178887.1| - 0.0026 17.5 0.0 0.013 15.3 0.0 2.3 2 0 0 2 2 2 1 Helix-hairpin-helix motif HHH_5 PF14520.6 gi|257389114|ref|YP_003178887.1| - 0.011 16.3 0.0 0.12 13.0 0.0 2.3 2 0 0 2 2 2 0 Helix-hairpin-helix domain DUF732 PF05305.14 gi|257389114|ref|YP_003178887.1| - 0.068 13.6 1.1 0.31 11.5 0.1 2.3 2 0 0 2 2 2 0 Protein of unknown function (DUF732) DUF2400 PF09674.10 gi|257389114|ref|YP_003178887.1| - 0.088 12.8 0.0 0.15 12.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2400) DUF371 PF04027.13 gi|257389115|ref|YP_003178888.1| - 1e-53 180.8 1.2 1.2e-53 180.7 1.2 1.0 1 0 0 1 1 1 1 Domain of unknown function (DUF371) Glyco_hydro_2 PF00703.21 gi|257389117|ref|YP_003178890.1| - 4.2e-08 33.8 0.0 9.3e-08 32.7 0.0 1.5 1 0 0 1 1 1 1 Glycosyl hydrolases family 2 Glyco_hydro_2_N PF02837.18 gi|257389117|ref|YP_003178890.1| - 0.023 14.6 0.0 0.045 13.6 0.0 1.4 1 0 0 1 1 1 0 Glycosyl hydrolases family 2, sugar binding domain TOM20_plant PF06552.12 gi|257389118|ref|YP_003178891.1| - 0.58 9.9 8.6 1.3 8.7 7.9 1.9 1 1 1 2 2 2 0 Plant specific mitochondrial import receptor subunit TOM20 YtxH PF12732.7 gi|257389118|ref|YP_003178891.1| - 0.82 10.2 35.4 21 5.7 2.7 5.0 1 1 2 3 3 3 0 YtxH-like protein DUF1664 PF07889.12 gi|257389118|ref|YP_003178891.1| - 0.94 9.5 29.0 1.8 8.6 8.2 3.6 1 1 1 3 3 3 0 Protein of unknown function (DUF1664) T3SSipB PF16535.5 gi|257389118|ref|YP_003178891.1| - 1.7 9.1 36.5 0.085 13.3 11.1 3.2 1 1 2 3 3 3 0 Type III cell invasion protein SipB Prominin PF05478.11 gi|257389118|ref|YP_003178891.1| - 2.7 5.8 24.5 0.3 9.0 9.6 2.2 1 1 1 2 2 2 0 Prominin Laminin_II PF06009.12 gi|257389118|ref|YP_003178891.1| - 3.7 7.6 33.9 0.96 9.5 10.7 3.7 1 1 3 4 4 4 0 Laminin Domain II Syntaxin_2 PF14523.6 gi|257389118|ref|YP_003178891.1| - 5.6 7.4 31.2 0.11 12.9 6.0 4.1 1 1 2 4 4 4 0 Syntaxin-like protein LysE PF01810.18 gi|257389119|ref|YP_003178892.1| - 6.8e-21 74.6 10.9 1.5e-20 73.5 2.1 2.1 1 1 1 2 2 2 2 LysE type translocator HD PF01966.22 gi|257389120|ref|YP_003178893.1| - 1.4e-17 64.0 1.2 1.4e-17 64.0 1.2 1.6 2 0 0 2 2 2 1 HD domain Acetyltransf_1 PF00583.25 gi|257389121|ref|YP_003178894.1| - 2.6e-12 47.0 0.0 4.1e-12 46.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|257389121|ref|YP_003178894.1| - 9.7e-12 44.9 0.0 1.7e-11 44.2 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|257389121|ref|YP_003178894.1| - 1e-10 41.9 0.0 2.4e-10 40.7 0.0 1.6 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|257389121|ref|YP_003178894.1| - 0.00045 20.9 0.0 0.00065 20.4 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|257389121|ref|YP_003178894.1| - 0.002 18.3 0.0 0.0033 17.6 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_9 PF13527.7 gi|257389121|ref|YP_003178894.1| - 0.0023 18.0 0.0 0.05 13.7 0.0 2.3 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_CG PF14542.6 gi|257389121|ref|YP_003178894.1| - 0.028 14.5 0.2 0.065 13.4 0.0 1.7 2 0 0 2 2 2 0 GCN5-related N-acetyl-transferase Zn-ribbon_8 PF09723.10 gi|257389121|ref|YP_003178894.1| - 0.037 14.1 0.5 0.069 13.3 0.5 1.4 1 0 0 1 1 1 0 Zinc ribbon domain FR47 PF08445.10 gi|257389121|ref|YP_003178894.1| - 0.13 12.3 0.0 0.29 11.1 0.0 1.5 1 0 0 1 1 1 0 FR47-like protein Orf78 PF06024.12 gi|257389122|ref|YP_003178895.1| - 0.017 15.4 0.0 0.017 15.4 0.0 1.1 1 0 0 1 1 1 0 Orf78 (ac78) DUF621 PF04789.15 gi|257389122|ref|YP_003178895.1| - 0.03 13.5 0.1 0.033 13.3 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF621) PAP2 PF01569.21 gi|257389122|ref|YP_003178895.1| - 0.13 12.0 2.2 0.2 11.4 2.2 1.5 1 1 0 1 1 1 0 PAP2 superfamily COX4 PF02936.14 gi|257389122|ref|YP_003178895.1| - 0.19 11.7 0.0 0.22 11.5 0.0 1.0 1 0 0 1 1 1 0 Cytochrome c oxidase subunit IV Rieske PF00355.26 gi|257389123|ref|YP_003178896.1| - 1.2e-06 28.4 0.0 2.9e-06 27.1 0.0 1.6 1 1 1 2 2 2 1 Rieske [2Fe-2S] domain HTH_20 PF12840.7 gi|257389124|ref|YP_003178897.1| - 0.0065 16.5 0.9 0.012 15.7 0.9 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain Zn-ribbon_8 PF09723.10 gi|257389124|ref|YP_003178897.1| - 0.031 14.4 3.0 0.08 13.1 3.0 1.7 1 0 0 1 1 1 0 Zinc ribbon domain PhnA_Zn_Ribbon PF08274.12 gi|257389124|ref|YP_003178897.1| - 0.039 13.9 3.6 0.94 9.5 0.6 2.2 2 0 0 2 2 2 0 PhnA Zinc-Ribbon FYDLN_acid PF09538.10 gi|257389124|ref|YP_003178897.1| - 0.047 14.4 0.9 0.047 14.4 0.9 1.6 2 0 0 2 2 2 0 Protein of unknown function (FYDLN_acid) Zn_Tnp_IS91 PF14319.6 gi|257389124|ref|YP_003178897.1| - 0.11 12.6 0.0 0.12 12.4 0.0 1.3 1 1 0 1 1 1 0 Transposase zinc-binding domain DUF4503 PF14951.6 gi|257389124|ref|YP_003178897.1| - 0.12 10.8 0.1 0.14 10.6 0.1 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4503) HNH PF01844.23 gi|257389124|ref|YP_003178897.1| - 0.21 11.8 2.8 0.91 9.7 0.7 2.6 1 1 1 2 2 2 0 HNH endonuclease zf-trcl PF13451.6 gi|257389124|ref|YP_003178897.1| - 0.82 9.6 7.0 0.61 10.0 4.1 2.0 1 1 1 2 2 2 0 Probable zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|257389124|ref|YP_003178897.1| - 6.2 6.6 6.4 19 5.1 0.2 2.2 2 0 0 2 2 2 0 Rubredoxin metal binding domain FAD_binding_6 PF00970.24 gi|257389125|ref|YP_003178898.1| - 4.3e-11 43.0 0.0 5.6e-11 42.7 0.0 1.1 1 0 0 1 1 1 1 Oxidoreductase FAD-binding domain POR_N PF01855.19 gi|257389126|ref|YP_003178899.1| - 2e-61 207.7 0.3 3.8e-61 206.8 0.3 1.5 1 0 0 1 1 1 1 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg POR PF01558.18 gi|257389126|ref|YP_003178899.1| - 4.8e-40 137.5 1.9 5.8e-40 137.2 0.6 1.8 2 0 0 2 2 2 1 Pyruvate ferredoxin/flavodoxin oxidoreductase TPP_enzyme_N PF02776.18 gi|257389126|ref|YP_003178899.1| - 8.9e-07 28.7 0.2 2.1e-06 27.4 0.2 1.6 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain PFOR_II PF17147.4 gi|257389126|ref|YP_003178899.1| - 0.00021 21.5 0.0 0.0006 20.1 0.0 1.8 1 0 0 1 1 1 1 Pyruvate:ferredoxin oxidoreductase core domain II TPP_enzyme_C PF02775.21 gi|257389127|ref|YP_003178900.1| - 1.5e-32 112.5 0.3 2.3e-32 111.9 0.3 1.3 1 0 0 1 1 1 1 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain PFO_beta_C PF12367.8 gi|257389127|ref|YP_003178900.1| - 4.1e-17 62.1 0.4 1.2e-16 60.5 0.4 1.8 1 0 0 1 1 1 1 Pyruvate ferredoxin oxidoreductase beta subunit C terminal RNA_POL_M_15KD PF02150.16 gi|257389128|ref|YP_003178901.1| - 1.5e-07 31.2 3.3 1e-06 28.5 1.6 2.4 2 0 0 2 2 2 1 RNA polymerases M/15 Kd subunit OrfB_Zn_ribbon PF07282.11 gi|257389128|ref|YP_003178901.1| - 0.0012 18.7 8.6 0.031 14.2 2.2 2.3 2 0 0 2 2 2 2 Putative transposase DNA-binding domain TFIIS_C PF01096.18 gi|257389128|ref|YP_003178901.1| - 0.0095 15.8 0.6 0.0095 15.8 0.6 3.7 4 0 0 4 4 4 1 Transcription factor S-II (TFIIS) zf-RRN7 PF11781.8 gi|257389128|ref|YP_003178901.1| - 0.033 13.9 8.6 8.3 6.2 0.2 4.2 4 0 0 4 4 4 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 DZR PF12773.7 gi|257389128|ref|YP_003178901.1| - 0.083 12.9 1.1 0.083 12.9 1.1 2.6 2 1 0 2 2 2 0 Double zinc ribbon zinc-ribbons_6 PF07191.12 gi|257389128|ref|YP_003178901.1| - 5.1 7.2 9.8 0.32 11.0 2.3 2.3 2 1 0 2 2 2 0 zinc-ribbons KRAB PF01352.27 gi|257389129|ref|YP_003178902.1| - 0.5 10.1 1.8 1.5 8.5 0.4 2.4 2 0 0 2 2 2 0 KRAB box DAO PF01266.24 gi|257389130|ref|YP_003178903.1| - 2.7e-12 47.0 0.0 3.1e-05 23.7 0.0 2.2 2 0 0 2 2 2 2 FAD dependent oxidoreductase Lycopene_cycl PF05834.12 gi|257389130|ref|YP_003178903.1| - 1.2e-08 34.4 0.0 1.8e-08 33.8 0.0 1.2 1 0 0 1 1 1 1 Lycopene cyclase protein Trp_halogenase PF04820.14 gi|257389130|ref|YP_003178903.1| - 1.1e-07 31.1 0.0 8.2e-05 21.6 0.0 2.8 2 1 0 3 3 3 2 Tryptophan halogenase Pyr_redox_2 PF07992.14 gi|257389130|ref|YP_003178903.1| - 6.5e-07 28.9 0.0 6.5e-06 25.6 0.1 2.3 2 1 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase FAD_oxidored PF12831.7 gi|257389130|ref|YP_003178903.1| - 2e-06 27.5 0.1 4.4e-06 26.3 0.1 1.5 1 1 0 1 1 1 1 FAD dependent oxidoreductase HI0933_like PF03486.14 gi|257389130|ref|YP_003178903.1| - 6.2e-06 25.2 0.0 0.00074 18.3 0.0 2.1 2 0 0 2 2 2 2 HI0933-like protein FAD_binding_2 PF00890.24 gi|257389130|ref|YP_003178903.1| - 6.8e-06 25.4 0.0 0.00013 21.2 0.0 2.1 1 1 1 2 2 2 1 FAD binding domain Thi4 PF01946.17 gi|257389130|ref|YP_003178903.1| - 0.00031 20.1 0.0 0.0029 16.9 0.0 2.2 2 0 0 2 2 2 1 Thi4 family GIDA PF01134.22 gi|257389130|ref|YP_003178903.1| - 0.00039 19.6 0.0 0.11 11.5 0.0 2.1 2 0 0 2 2 2 2 Glucose inhibited division protein A NAD_binding_8 PF13450.6 gi|257389130|ref|YP_003178903.1| - 0.00041 20.5 0.0 0.0014 18.8 0.0 1.9 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_binding_3 PF01494.19 gi|257389130|ref|YP_003178903.1| - 0.00062 19.1 0.2 0.035 13.3 0.2 2.6 1 1 0 1 1 1 1 FAD binding domain Pyr_redox_3 PF13738.6 gi|257389130|ref|YP_003178903.1| - 0.057 12.7 0.0 0.093 12.0 0.0 1.3 1 0 0 1 1 1 0 Pyridine nucleotide-disulphide oxidoreductase TrkA_N PF02254.18 gi|257389130|ref|YP_003178903.1| - 0.12 12.6 0.0 0.28 11.5 0.0 1.6 1 0 0 1 1 1 0 TrkA-N domain Pyr_redox PF00070.27 gi|257389130|ref|YP_003178903.1| - 0.19 12.3 0.0 0.5 11.0 0.0 1.7 2 0 0 2 2 1 0 Pyridine nucleotide-disulphide oxidoreductase NAD_kinase PF01513.21 gi|257389131|ref|YP_003178904.1| - 2.1e-11 43.6 3.6 2.8e-11 43.2 3.6 1.1 1 0 0 1 1 1 1 ATP-NAD kinase DUF3203 PF11462.8 gi|257389131|ref|YP_003178904.1| - 0.02 15.0 0.1 0.077 13.2 0.1 2.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3203) Cytochrom_B_C PF00032.17 gi|257389135|ref|YP_003178908.1| - 3.4e-09 36.9 0.3 3.4e-09 36.9 0.3 1.6 2 0 0 2 2 2 1 Cytochrome b(C-terminal)/b6/petD Cytochrome_B PF00033.19 gi|257389136|ref|YP_003178909.1| - 4.1e-46 157.2 17.2 5.6e-46 156.8 17.2 1.1 1 0 0 1 1 1 1 Cytochrome b/b6/petB Cytochrom_B_N_2 PF13631.6 gi|257389136|ref|YP_003178909.1| - 4.5e-41 140.7 12.6 7.9e-41 139.9 11.2 1.9 2 0 0 2 2 2 1 Cytochrome b(N-terminal)/b6/petB DUF4405 PF14358.6 gi|257389136|ref|YP_003178909.1| - 0.0004 20.9 1.4 0.0004 20.9 1.4 3.2 2 1 0 2 2 2 1 Domain of unknown function (DUF4405) DUF373 PF04123.13 gi|257389136|ref|YP_003178909.1| - 0.12 11.9 8.7 0.017 14.5 4.0 1.7 1 1 1 2 2 2 0 Domain of unknown function (DUF373) Ni_hydr_CYTB PF01292.20 gi|257389136|ref|YP_003178909.1| - 0.18 11.4 20.3 0.07 12.7 3.9 2.3 1 1 1 2 2 2 0 Prokaryotic cytochrome b561 Rieske PF00355.26 gi|257389137|ref|YP_003178910.1| - 0.00014 21.7 0.0 0.00029 20.7 0.0 1.5 1 0 0 1 1 1 1 Rieske [2Fe-2S] domain Prominin PF05478.11 gi|257389138|ref|YP_003178911.1| - 0.011 13.7 0.5 0.013 13.5 0.5 1.0 1 0 0 1 1 1 0 Prominin Copper-bind PF00127.20 gi|257389139|ref|YP_003178912.1| - 1.3e-13 51.3 0.1 3.8e-13 49.7 0.1 1.8 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.6 gi|257389139|ref|YP_003178912.1| - 0.0089 16.1 0.0 0.015 15.4 0.0 1.4 1 0 0 1 1 1 1 Cupredoxin-like domain Rab5ip PF07019.12 gi|257389141|ref|YP_003178914.1| - 0.011 16.3 0.2 0.011 16.3 0.2 2.1 2 1 0 2 2 2 0 Rab5-interacting protein (Rab5ip) PsbJ PF01788.17 gi|257389141|ref|YP_003178914.1| - 0.93 9.4 9.2 0.32 10.9 2.4 2.6 2 0 0 2 2 2 0 PsbJ HhH-GPD PF00730.25 gi|257389142|ref|YP_003178915.1| - 4.3e-22 78.6 0.0 5.5e-22 78.3 0.0 1.2 1 0 0 1 1 1 1 HhH-GPD superfamily base excision DNA repair protein HHH PF00633.23 gi|257389142|ref|YP_003178915.1| - 1.2e-08 34.4 0.0 4.2e-08 32.6 0.0 2.0 2 0 0 2 2 2 1 Helix-hairpin-helix motif EndIII_4Fe-2S PF10576.9 gi|257389142|ref|YP_003178915.1| - 6.4e-06 26.3 4.5 1e-05 25.7 4.5 1.3 1 0 0 1 1 1 1 Iron-sulfur binding domain of endonuclease III HHH_5 PF14520.6 gi|257389142|ref|YP_003178915.1| - 0.0082 16.7 0.1 0.2 12.3 0.0 2.2 2 0 0 2 2 2 1 Helix-hairpin-helix domain IMS_HHH PF11798.8 gi|257389142|ref|YP_003178915.1| - 0.11 12.9 0.0 0.27 11.6 0.0 1.7 1 0 0 1 1 1 0 IMS family HHH motif AhpC-TSA PF00578.21 gi|257389143|ref|YP_003178916.1| - 1.2e-11 44.5 0.0 1.8e-11 44.1 0.0 1.2 1 0 0 1 1 1 1 AhpC/TSA family Redoxin PF08534.10 gi|257389143|ref|YP_003178916.1| - 1.3e-08 34.6 0.0 2.1e-08 34.0 0.0 1.4 1 1 0 1 1 1 1 Redoxin Acetyltransf_3 PF13302.7 gi|257389144|ref|YP_003178917.1| - 9.6e-29 100.8 0.0 1.2e-28 100.5 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|257389144|ref|YP_003178917.1| - 6.5e-13 48.9 0.0 8.2e-13 48.6 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_4 PF13420.7 gi|257389144|ref|YP_003178917.1| - 9.2e-12 45.4 0.0 1.1e-11 45.1 0.0 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_8 PF13523.6 gi|257389144|ref|YP_003178917.1| - 2.7e-09 36.8 0.1 1.3e-08 34.6 0.1 1.8 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_10 PF13673.7 gi|257389144|ref|YP_003178917.1| - 5.3e-05 23.2 0.0 6.7e-05 22.8 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|257389144|ref|YP_003178917.1| - 0.00053 20.4 0.1 0.0013 19.1 0.1 1.6 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain GNAT_acetyltran PF12746.7 gi|257389144|ref|YP_003178917.1| - 0.0034 17.0 0.0 0.0047 16.5 0.0 1.2 1 0 0 1 1 1 1 GNAT acetyltransferase FR47 PF08445.10 gi|257389144|ref|YP_003178917.1| - 0.026 14.5 0.1 0.043 13.8 0.1 1.3 1 0 0 1 1 1 0 FR47-like protein DUF4988 PF16378.5 gi|257389144|ref|YP_003178917.1| - 0.083 12.6 0.0 0.12 12.1 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function RtcB PF01139.17 gi|257389145|ref|YP_003178918.1| - 1.8e-57 195.4 0.0 5.6e-28 98.3 0.0 2.1 2 0 0 2 2 2 2 tRNA-splicing ligase RtcB DUF998 PF06197.13 gi|257389146|ref|YP_003178919.1| - 0.0053 16.4 1.7 0.0063 16.1 1.7 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF998) Wzy_C_2 PF11846.8 gi|257389146|ref|YP_003178919.1| - 0.037 14.0 1.4 0.046 13.6 1.4 1.1 1 0 0 1 1 1 0 Virulence factor membrane-bound polymerase, C-terminal DUF2834 PF11196.8 gi|257389146|ref|YP_003178919.1| - 0.062 13.7 1.1 0.081 13.3 1.1 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF2834) DUF5373 PF17343.2 gi|257389146|ref|YP_003178919.1| - 0.11 12.3 0.0 0.12 12.2 0.0 1.0 1 0 0 1 1 1 0 Family of unknown function (DUF5373) DUF1673 PF07895.11 gi|257389146|ref|YP_003178919.1| - 0.12 12.0 0.1 0.14 11.9 0.1 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF1673) Acyl-CoA_dh_1 PF00441.24 gi|257389147|ref|YP_003178920.1| - 2.8e-49 167.2 0.4 4.3e-49 166.6 0.4 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_N PF02771.16 gi|257389147|ref|YP_003178920.1| - 5.1e-36 123.8 0.1 9.6e-36 122.9 0.1 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, N-terminal domain Acyl-CoA_dh_M PF02770.19 gi|257389147|ref|YP_003178920.1| - 5.2e-25 87.5 0.2 1.6e-24 85.9 0.1 1.8 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.11 gi|257389147|ref|YP_003178920.1| - 7.3e-19 68.4 0.3 1.1e-18 67.8 0.3 1.3 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, C-terminal domain RIO1 PF01163.22 gi|257389148|ref|YP_003178921.1| - 9.5e-10 38.4 0.0 1.6e-09 37.7 0.0 1.2 1 0 0 1 1 1 1 RIO1 family APH PF01636.23 gi|257389148|ref|YP_003178921.1| - 4.4e-07 30.1 2.8 0.0024 17.8 0.3 2.5 1 1 1 2 2 2 2 Phosphotransferase enzyme family Kdo PF06293.14 gi|257389148|ref|YP_003178921.1| - 8.9e-06 25.2 0.0 1.6e-05 24.4 0.0 1.4 1 0 0 1 1 1 1 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase PF00069.25 gi|257389148|ref|YP_003178921.1| - 0.00074 19.0 0.0 0.001 18.5 0.0 1.1 1 0 0 1 1 1 1 Protein kinase domain Kinase-PolyVal PF18762.1 gi|257389148|ref|YP_003178921.1| - 0.016 15.2 0.0 0.023 14.6 0.0 1.2 1 0 0 1 1 1 0 Serine/Threonine/Tyrosine Kinase found in polyvalent proteins EamA PF00892.20 gi|257389149|ref|YP_003178922.1| - 1.3e-29 103.1 33.4 8.9e-15 55.1 13.6 2.0 2 0 0 2 2 2 2 EamA-like transporter family SLC35F PF06027.12 gi|257389149|ref|YP_003178922.1| - 0.00031 20.4 5.1 0.00038 20.1 5.1 1.4 1 1 0 1 1 1 1 Solute carrier family 35 TPT PF03151.16 gi|257389149|ref|YP_003178922.1| - 0.0021 17.5 12.6 0.092 12.1 5.3 2.2 2 0 0 2 2 2 2 Triose-phosphate Transporter family Pyr_redox_2 PF07992.14 gi|257389150|ref|YP_003178923.1| - 1.8e-13 50.4 11.8 2.8e-09 36.6 1.7 2.0 1 1 1 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_3 PF01494.19 gi|257389150|ref|YP_003178923.1| - 1.4e-07 31.1 3.9 8.3e-05 22.0 0.0 2.1 1 1 0 2 2 2 2 FAD binding domain HI0933_like PF03486.14 gi|257389150|ref|YP_003178923.1| - 1.1e-06 27.6 0.1 9.5e-05 21.3 0.0 2.1 2 0 0 2 2 2 2 HI0933-like protein Pyr_redox_3 PF13738.6 gi|257389150|ref|YP_003178923.1| - 5.1e-06 26.0 1.1 0.007 15.7 0.0 2.5 1 1 2 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|257389150|ref|YP_003178923.1| - 6.8e-06 25.4 2.3 1.6e-05 24.2 0.1 2.0 1 1 1 2 2 2 1 FAD binding domain DAO PF01266.24 gi|257389150|ref|YP_003178923.1| - 1e-05 25.3 3.5 0.017 14.7 0.1 2.2 1 1 1 2 2 2 2 FAD dependent oxidoreductase Thi4 PF01946.17 gi|257389150|ref|YP_003178923.1| - 0.00039 19.8 0.6 0.0014 17.9 0.2 2.0 1 1 1 2 2 2 1 Thi4 family GIDA PF01134.22 gi|257389150|ref|YP_003178923.1| - 0.00053 19.2 0.7 0.0063 15.7 0.0 2.2 1 1 1 2 2 2 1 Glucose inhibited division protein A FAD_oxidored PF12831.7 gi|257389150|ref|YP_003178923.1| - 0.00096 18.6 0.3 0.0018 17.7 0.0 1.6 2 0 0 2 2 2 1 FAD dependent oxidoreductase Lycopene_cycl PF05834.12 gi|257389150|ref|YP_003178923.1| - 0.0011 18.1 1.5 0.023 13.8 0.1 2.1 1 1 1 2 2 2 1 Lycopene cyclase protein K_oxygenase PF13434.6 gi|257389150|ref|YP_003178923.1| - 0.0011 18.1 0.8 0.22 10.6 0.0 2.1 1 1 0 2 2 2 2 L-lysine 6-monooxygenase (NADPH-requiring) NAD_binding_8 PF13450.6 gi|257389150|ref|YP_003178923.1| - 0.0012 19.0 0.0 0.0029 17.8 0.0 1.7 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain NAD_binding_9 PF13454.6 gi|257389150|ref|YP_003178923.1| - 0.02 14.9 1.0 3.6 7.6 0.2 2.4 2 0 0 2 2 2 0 FAD-NAD(P)-binding Trp_halogenase PF04820.14 gi|257389150|ref|YP_003178923.1| - 0.023 13.5 3.0 1.1 8.1 0.9 2.1 2 0 0 2 2 2 0 Tryptophan halogenase NAD_binding_7 PF13241.6 gi|257389150|ref|YP_003178923.1| - 0.11 13.0 0.1 0.24 11.9 0.0 1.6 1 1 0 1 1 1 0 Putative NAD(P)-binding MCPsignal PF00015.21 gi|257389151|ref|YP_003178924.1| - 3e-36 124.8 29.6 3e-36 124.8 29.6 4.7 2 2 2 4 4 4 2 Methyl-accepting chemotaxis protein (MCP) signalling domain DUF948 PF06103.11 gi|257389151|ref|YP_003178924.1| - 2.1e-05 24.7 44.8 0.00022 21.4 5.5 6.3 3 3 3 6 6 6 3 Bacterial protein of unknown function (DUF948) HAMP PF00672.25 gi|257389151|ref|YP_003178924.1| - 0.0021 18.4 0.4 0.0021 18.4 0.4 5.7 7 0 0 7 7 7 1 HAMP domain DUF4131 PF13567.6 gi|257389151|ref|YP_003178924.1| - 0.049 13.3 1.1 12 5.5 0.0 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4131) LMBR1 PF04791.16 gi|257389151|ref|YP_003178924.1| - 0.11 11.4 18.0 1.5 7.6 3.5 3.0 2 1 0 2 2 2 0 LMBR1-like membrane protein Laminin_II PF06009.12 gi|257389151|ref|YP_003178924.1| - 0.38 10.8 58.2 0.079 13.0 8.2 5.3 2 2 3 5 5 5 0 Laminin Domain II Elf4 PF07011.11 gi|257389151|ref|YP_003178924.1| - 0.47 10.4 3.8 3.5 7.6 0.1 3.1 3 0 0 3 3 3 0 Early Flowering 4 domain DASH_Dam1 PF08653.10 gi|257389151|ref|YP_003178924.1| - 0.65 9.8 5.6 55 3.7 0.0 4.5 4 1 0 4 4 4 0 DASH complex subunit Dam1 DUF1664 PF07889.12 gi|257389151|ref|YP_003178924.1| - 0.69 10.0 44.2 0.19 11.8 6.4 5.6 2 2 4 6 6 6 0 Protein of unknown function (DUF1664) DUF4381 PF14316.6 gi|257389151|ref|YP_003178924.1| - 1.3 9.2 13.6 0.14 12.4 2.2 3.2 3 0 0 3 3 3 0 Domain of unknown function (DUF4381) Polyketide_cyc PF03364.20 gi|257389152|ref|YP_003178925.1| - 2e-09 37.8 0.1 2.4e-09 37.5 0.1 1.1 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport Polyketide_cyc2 PF10604.9 gi|257389152|ref|YP_003178925.1| - 8.4e-09 35.8 1.2 9e-09 35.7 1.2 1.0 1 0 0 1 1 1 1 Polyketide cyclase / dehydrase and lipid transport ELFV_dehydrog PF00208.21 gi|257389153|ref|YP_003178926.1| - 4.8e-71 239.3 0.6 6e-71 239.0 0.6 1.1 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 gi|257389153|ref|YP_003178926.1| - 9.3e-54 180.8 0.0 1.7e-53 180.0 0.0 1.5 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.19 gi|257389153|ref|YP_003178926.1| - 0.047 13.1 0.1 0.1 12.0 0.1 1.5 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DUF4251 PF14059.6 gi|257389153|ref|YP_003178926.1| - 0.083 12.8 0.0 15 5.5 0.0 2.3 2 0 0 2 2 2 0 Domain of unknown function (DUF4251) HpcH_HpaI PF03328.14 gi|257389154|ref|YP_003178927.1| - 2.3e-54 183.8 3.2 3.5e-54 183.3 3.2 1.3 1 0 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family C-C_Bond_Lyase PF15617.6 gi|257389154|ref|YP_003178927.1| - 9.2e-11 41.5 0.4 9.1e-07 28.3 0.1 2.1 2 0 0 2 2 2 2 C-C_Bond_Lyase of the TIM-Barrel fold Phage_holin_7_1 PF16081.5 gi|257389154|ref|YP_003178927.1| - 1 9.5 5.0 11 6.2 1.0 2.3 2 0 0 2 2 2 0 Mycobacterial 2 TMS Phage Holin (M2 Hol) Family DZR PF12773.7 gi|257389155|ref|YP_003178928.1| - 1.9e-19 69.4 26.2 2.7e-11 43.3 8.2 3.3 2 1 1 3 3 3 2 Double zinc ribbon zf-ribbon_3 PF13248.6 gi|257389155|ref|YP_003178928.1| - 8.7e-17 59.9 29.8 3.6e-06 26.2 2.8 4.7 4 0 0 4 4 4 3 zinc-ribbon domain zinc_ribbon_2 PF13240.6 gi|257389155|ref|YP_003178928.1| - 1.3e-12 47.0 26.6 0.00012 21.6 2.4 4.5 4 0 0 4 4 4 3 zinc-ribbon domain zinc_ribbon_15 PF17032.5 gi|257389155|ref|YP_003178928.1| - 4.7e-10 40.1 15.4 0.0011 19.7 0.2 3.8 4 0 0 4 4 4 3 zinc-ribbon family FHA PF00498.26 gi|257389155|ref|YP_003178928.1| - 3.5e-07 30.5 0.0 6.1e-07 29.7 0.0 1.3 1 0 0 1 1 1 1 FHA domain Zn-ribbon_8 PF09723.10 gi|257389155|ref|YP_003178928.1| - 9.1e-05 22.5 31.0 0.0013 18.8 1.1 5.7 3 2 4 7 7 7 2 Zinc ribbon domain zinc-ribbons_6 PF07191.12 gi|257389155|ref|YP_003178928.1| - 0.00052 20.0 14.8 0.25 11.3 4.2 4.2 2 1 2 4 4 4 3 zinc-ribbons Prok-RING_4 PF14447.6 gi|257389155|ref|YP_003178928.1| - 0.026 14.4 10.5 18 5.3 0.1 4.8 3 2 2 5 5 5 0 Prokaryotic RING finger family 4 DUF35_N PF12172.8 gi|257389155|ref|YP_003178928.1| - 0.034 14.0 1.8 0.034 14.0 1.8 5.1 5 2 0 5 5 4 0 Rubredoxin-like zinc ribbon domain (DUF35_N) zinc-ribbon_6 PF10005.9 gi|257389155|ref|YP_003178928.1| - 0.038 14.7 4.4 13 6.5 0.1 3.4 3 0 0 3 3 3 0 zinc-ribbon domain DUF2116 PF09889.9 gi|257389155|ref|YP_003178928.1| - 0.047 13.7 17.1 1.3 9.0 0.3 4.0 4 0 0 4 4 4 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) zf-CHY PF05495.12 gi|257389155|ref|YP_003178928.1| - 0.12 12.8 5.1 8.1 7.0 0.2 3.0 2 1 0 3 3 3 0 CHY zinc finger OrfB_Zn_ribbon PF07282.11 gi|257389155|ref|YP_003178928.1| - 0.61 10.1 21.9 5.4 7.0 0.8 4.3 2 1 2 4 4 4 0 Putative transposase DNA-binding domain Zn-C2H2_12 PF18112.1 gi|257389155|ref|YP_003178928.1| - 0.66 10.5 2.2 0.91 10.0 0.1 2.4 2 0 0 2 2 1 0 Autophagy receptor zinc finger-C2H2 domain SPX PF03105.19 gi|257389155|ref|YP_003178928.1| - 1 9.2 4.3 1.3 8.9 4.3 1.1 1 0 0 1 1 1 0 SPX domain Nudix_N_2 PF14803.6 gi|257389155|ref|YP_003178928.1| - 1.2 9.1 27.0 1.4 8.9 4.4 5.6 5 1 1 6 6 6 0 Nudix N-terminal DUF2318 PF10080.9 gi|257389155|ref|YP_003178928.1| - 1.6 8.9 0.0 1.6 8.9 0.0 3.3 2 1 1 3 3 3 0 Predicted membrane protein (DUF2318) zinc_ribbon_9 PF14369.6 gi|257389155|ref|YP_003178928.1| - 2 8.7 30.2 1.6 9.1 0.3 6.5 4 2 2 6 6 6 0 zinc-ribbon zinc_ribbon_11 PF11682.8 gi|257389155|ref|YP_003178928.1| - 3.3 7.7 5.1 19 5.2 0.1 3.1 2 1 0 2 2 2 0 Probable zinc-ribbon zf-C2HC_2 PF13913.6 gi|257389155|ref|YP_003178928.1| - 3.3 7.7 6.9 7.1 6.7 0.0 3.8 3 0 0 3 3 3 0 zinc-finger of a C2HC-type DUF983 PF06170.12 gi|257389155|ref|YP_003178928.1| - 4.8 7.7 26.3 12 6.3 0.3 6.4 3 2 4 7 7 7 0 Protein of unknown function (DUF983) NMD3 PF04981.13 gi|257389155|ref|YP_003178928.1| - 5 6.5 15.2 0.079 12.4 3.6 2.6 2 1 1 3 3 3 0 NMD3 family zf_C2HC_14 PF18574.1 gi|257389155|ref|YP_003178928.1| - 5.5 6.9 4.6 24 4.8 0.0 3.5 4 0 0 4 4 3 0 C2HC Zing finger domain HypA PF01155.19 gi|257389155|ref|YP_003178928.1| - 7.7 6.6 20.7 16 5.5 4.0 4.3 2 1 1 3 3 3 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-TFIIB PF13453.6 gi|257389155|ref|YP_003178928.1| - 7.8 5.9 27.0 0.13 11.6 2.9 4.3 5 0 0 5 5 5 0 Transcription factor zinc-finger PP2C_2 PF13672.6 gi|257389156|ref|YP_003178929.1| - 2.7e-10 40.3 0.0 5.4e-10 39.3 0.0 1.5 1 1 0 1 1 1 1 Protein phosphatase 2C SpoIIE PF07228.12 gi|257389156|ref|YP_003178929.1| - 2.4e-07 30.9 2.1 5.5e-07 29.7 2.1 1.6 1 1 0 1 1 1 1 Stage II sporulation protein E (SpoIIE) PP2C PF00481.21 gi|257389156|ref|YP_003178929.1| - 2.4e-05 24.1 0.1 0.00011 21.9 0.1 2.3 1 1 0 1 1 1 1 Protein phosphatase 2C Pkinase PF00069.25 gi|257389157|ref|YP_003178930.1| - 2.4e-27 96.0 0.0 3e-27 95.7 0.0 1.1 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|257389157|ref|YP_003178930.1| - 5.1e-12 45.6 0.0 6.5e-12 45.3 0.0 1.2 1 0 0 1 1 1 1 Protein tyrosine kinase FHA PF00498.26 gi|257389157|ref|YP_003178930.1| - 1.5e-07 31.6 0.0 4.2e-07 30.2 0.0 1.7 1 1 0 1 1 1 1 FHA domain APH PF01636.23 gi|257389157|ref|YP_003178930.1| - 0.00061 19.8 0.2 0.013 15.5 0.1 2.1 1 1 1 2 2 2 1 Phosphotransferase enzyme family VWA PF00092.28 gi|257389158|ref|YP_003178931.1| - 3.3e-19 69.8 0.0 5.5e-19 69.1 0.0 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_2 PF13519.6 gi|257389158|ref|YP_003178931.1| - 7.7e-14 52.2 0.0 1.9e-13 50.9 0.0 1.7 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_3 PF13768.6 gi|257389158|ref|YP_003178931.1| - 4.7e-13 49.4 0.0 7.9e-13 48.6 0.0 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain VWA_CoxE PF05762.14 gi|257389158|ref|YP_003178931.1| - 3.7e-08 33.0 0.0 6.8e-08 32.2 0.0 1.4 1 0 0 1 1 1 1 VWA domain containing CoxE-like protein DUF2201 PF09967.9 gi|257389158|ref|YP_003178931.1| - 0.00024 21.2 0.0 0.00073 19.7 0.0 1.9 1 0 0 1 1 1 1 VWA-like domain (DUF2201) DUF1194 PF06707.11 gi|257389158|ref|YP_003178931.1| - 0.0021 17.3 0.1 0.057 12.6 0.0 2.3 1 1 1 2 2 2 1 Protein of unknown function (DUF1194) SMP PF04927.12 gi|257389158|ref|YP_003178931.1| - 0.2 12.1 3.4 0.83 10.2 3.4 2.1 1 0 0 1 1 1 0 Seed maturation protein GntR PF00392.21 gi|257389160|ref|YP_003178933.1| - 0.047 13.3 0.3 0.084 12.5 0.3 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family DUF4258 PF14076.6 gi|257389160|ref|YP_003178933.1| - 0.083 13.3 0.3 0.12 12.7 0.3 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4258) PAPS_reduct PF01507.19 gi|257389163|ref|YP_003178936.1| - 1.4e-16 61.0 0.0 3.1e-06 27.3 0.0 3.1 3 0 0 3 3 3 3 Phosphoadenosine phosphosulfate reductase family Diphthami_syn_2 PF01902.17 gi|257389163|ref|YP_003178936.1| - 0.021 14.3 0.0 0.11 11.9 0.0 1.9 2 0 0 2 2 2 0 Diphthamide synthase ATP_bind_3 PF01171.20 gi|257389163|ref|YP_003178936.1| - 0.2 11.4 0.0 0.35 10.6 0.0 1.3 1 0 0 1 1 1 0 PP-loop family Fer2 PF00111.27 gi|257389165|ref|YP_003178938.1| - 7.2e-11 41.9 2.5 1e-10 41.4 2.5 1.2 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain Fer2_3 PF13085.6 gi|257389165|ref|YP_003178938.1| - 0.065 13.2 0.1 0.067 13.2 0.1 1.2 1 0 0 1 1 1 0 2Fe-2S iron-sulfur cluster binding domain Trp_halogenase PF04820.14 gi|257389166|ref|YP_003178939.1| - 1.7e-18 66.8 1.7 1.6e-15 56.9 0.1 2.1 2 0 0 2 2 2 2 Tryptophan halogenase FAD_binding_3 PF01494.19 gi|257389166|ref|YP_003178939.1| - 6.5e-14 51.9 0.7 1.1e-07 31.5 0.1 2.1 2 0 0 2 2 2 2 FAD binding domain DAO PF01266.24 gi|257389166|ref|YP_003178939.1| - 8.7e-12 45.3 8.6 2.7e-07 30.5 1.7 2.5 2 1 0 2 2 2 2 FAD dependent oxidoreductase Pyr_redox PF00070.27 gi|257389166|ref|YP_003178939.1| - 1e-08 35.6 0.3 0.0023 18.4 0.3 2.6 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|257389166|ref|YP_003178939.1| - 1.8e-08 33.9 10.8 7.6e-06 25.3 0.8 2.7 3 0 0 3 3 3 2 FAD binding domain Pyr_redox_2 PF07992.14 gi|257389166|ref|YP_003178939.1| - 1.9e-07 30.7 5.4 0.00025 20.4 0.1 2.8 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase HI0933_like PF03486.14 gi|257389166|ref|YP_003178939.1| - 2.2e-06 26.7 0.8 0.0011 17.8 0.3 2.3 2 0 0 2 2 2 2 HI0933-like protein NAD_binding_8 PF13450.6 gi|257389166|ref|YP_003178939.1| - 6.6e-06 26.3 4.0 2.2e-05 24.6 0.3 2.6 2 0 0 2 2 2 1 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.7 gi|257389166|ref|YP_003178939.1| - 1.6e-05 24.5 5.9 1.6e-05 24.5 5.9 2.7 2 1 0 2 2 2 1 FAD dependent oxidoreductase GIDA PF01134.22 gi|257389166|ref|YP_003178939.1| - 4.2e-05 22.8 3.2 7.2e-05 22.0 3.2 1.5 1 1 0 1 1 1 1 Glucose inhibited division protein A Thi4 PF01946.17 gi|257389166|ref|YP_003178939.1| - 0.00015 21.1 0.5 0.0003 20.1 0.2 1.7 2 0 0 2 2 2 1 Thi4 family 3HCDH_N PF02737.18 gi|257389166|ref|YP_003178939.1| - 0.0015 18.5 0.1 0.0025 17.7 0.1 1.4 1 0 0 1 1 1 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ApbA PF02558.16 gi|257389166|ref|YP_003178939.1| - 0.0026 17.4 0.1 0.0047 16.6 0.1 1.4 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA Lycopene_cycl PF05834.12 gi|257389166|ref|YP_003178939.1| - 0.0058 15.7 4.3 0.52 9.3 0.2 2.9 3 0 0 3 3 3 2 Lycopene cyclase protein Pyr_redox_3 PF13738.6 gi|257389166|ref|YP_003178939.1| - 0.012 14.9 0.5 0.12 11.6 0.2 2.1 2 0 0 2 2 2 0 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|257389166|ref|YP_003178939.1| - 0.019 14.9 1.8 2.2 8.3 0.1 2.9 3 0 0 3 3 3 0 FAD-NAD(P)-binding IlvN PF07991.12 gi|257389166|ref|YP_003178939.1| - 0.04 13.5 0.0 0.072 12.7 0.0 1.3 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain Shikimate_DH PF01488.20 gi|257389166|ref|YP_003178939.1| - 0.083 12.9 0.0 0.23 11.5 0.0 1.7 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase Amino_oxidase PF01593.24 gi|257389166|ref|YP_003178939.1| - 0.085 12.1 0.1 1 8.5 0.0 2.1 2 0 0 2 2 2 0 Flavin containing amine oxidoreductase AlaDh_PNT_C PF01262.21 gi|257389166|ref|YP_003178939.1| - 2.6 7.3 4.7 0.25 10.6 0.1 1.6 2 0 0 2 2 1 0 Alanine dehydrogenase/PNT, C-terminal domain Peptidase_M20 PF01546.28 gi|257389167|ref|YP_003178940.1| - 1.5e-22 80.3 6.0 2.5e-22 79.6 6.0 1.3 1 0 0 1 1 1 1 Peptidase family M20/M25/M40 M20_dimer PF07687.14 gi|257389167|ref|YP_003178940.1| - 7.4e-14 51.6 1.2 1.7e-13 50.4 1.2 1.6 1 0 0 1 1 1 1 Peptidase dimerisation domain KH_7 PF17214.3 gi|257389168|ref|YP_003178941.1| - 1.2e-30 105.2 1.5 1.1e-28 99.0 0.6 2.5 2 0 0 2 2 2 1 KH domain Beta-Casp PF10996.8 gi|257389168|ref|YP_003178941.1| - 3.7e-19 69.0 0.0 6.7e-19 68.2 0.0 1.4 1 0 0 1 1 1 1 Beta-Casp domain RMMBL PF07521.12 gi|257389168|ref|YP_003178941.1| - 1.7e-15 56.7 0.0 4.5e-15 55.3 0.0 1.8 1 0 0 1 1 1 1 Zn-dependent metallo-hydrolase RNA specificity domain Lactamase_B PF00753.27 gi|257389168|ref|YP_003178941.1| - 3.9e-15 56.4 5.5 1.3e-14 54.7 5.5 1.9 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_6 PF16661.5 gi|257389168|ref|YP_003178941.1| - 1.6e-10 40.8 0.0 2.7e-10 40.0 0.0 1.3 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily domain Lactamase_B_2 PF12706.7 gi|257389168|ref|YP_003178941.1| - 3e-10 39.9 0.3 5.6e-10 39.1 0.3 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain KH_2 PF07650.17 gi|257389168|ref|YP_003178941.1| - 6.2e-07 29.1 0.1 2e-05 24.3 0.1 2.6 2 0 0 2 2 2 1 KH domain Lactamase_B_3 PF13483.6 gi|257389168|ref|YP_003178941.1| - 0.0024 17.8 0.0 0.0055 16.6 0.0 1.7 1 1 0 1 1 1 1 Beta-lactamase superfamily domain BMF PF15185.6 gi|257389170|ref|YP_003178943.1| - 0.19 11.4 0.0 0.27 10.9 0.0 1.2 1 0 0 1 1 1 0 Bcl-2-modifying factor, apoptosis HGTP_anticodon PF03129.20 gi|257389171|ref|YP_003178944.1| - 1.7e-21 76.2 0.0 3.7e-21 75.1 0.0 1.6 1 0 0 1 1 1 1 Anticodon binding domain tRNA-synt_2b PF00587.25 gi|257389171|ref|YP_003178944.1| - 5.7e-20 72.0 0.0 9.7e-20 71.3 0.0 1.3 1 0 0 1 1 1 1 tRNA synthetase class II core domain (G, H, P, S and T) ProRS-C_1 PF09180.11 gi|257389171|ref|YP_003178944.1| - 2e-19 69.6 1.8 5.4e-19 68.2 1.1 2.2 2 0 0 2 2 2 1 Prolyl-tRNA synthetase, C-terminal YceD PF02620.17 gi|257389171|ref|YP_003178944.1| - 0.058 13.5 2.5 0.19 11.9 0.6 2.5 3 0 0 3 3 3 0 Large ribosomal RNA subunit accumulation protein YceD VATC PF18716.1 gi|257389171|ref|YP_003178944.1| - 1.8 8.4 4.8 0.47 10.4 0.2 2.3 2 0 0 2 2 2 0 Vms1-associating treble clef domain Beta_helix PF13229.6 gi|257389172|ref|YP_003178945.1| - 3.4e-10 40.0 1.8 6.5e-10 39.1 1.8 1.4 1 0 0 1 1 1 1 Right handed beta helix region NosD PF05048.13 gi|257389172|ref|YP_003178945.1| - 1e-07 31.5 0.5 1.8e-07 30.7 0.5 1.3 1 0 0 1 1 1 1 Periplasmic copper-binding protein (NosD) FHA PF00498.26 gi|257389172|ref|YP_003178945.1| - 0.00078 19.7 0.0 0.0018 18.6 0.0 1.6 1 0 0 1 1 1 1 FHA domain DZR PF12773.7 gi|257389172|ref|YP_003178945.1| - 0.0013 18.7 0.3 0.0026 17.8 0.3 1.4 1 0 0 1 1 1 1 Double zinc ribbon zinc_ribbon_2 PF13240.6 gi|257389172|ref|YP_003178945.1| - 0.0014 18.3 3.5 0.0025 17.5 3.5 1.5 1 0 0 1 1 1 1 zinc-ribbon domain Glyco_hydro_28 PF00295.17 gi|257389172|ref|YP_003178945.1| - 0.006 15.7 1.8 0.99 8.4 0.1 2.3 1 1 1 2 2 2 2 Glycosyl hydrolases family 28 zf-C2HC5 PF06221.13 gi|257389172|ref|YP_003178945.1| - 0.036 14.0 0.2 0.061 13.3 0.2 1.2 1 0 0 1 1 1 0 Putative zinc finger motif, C2HC5-type zf-NADH-PPase PF09297.11 gi|257389172|ref|YP_003178945.1| - 0.049 13.3 1.8 0.073 12.7 0.1 2.2 2 0 0 2 2 2 0 NADH pyrophosphatase zinc ribbon domain zinc_ribbon_15 PF17032.5 gi|257389172|ref|YP_003178945.1| - 0.054 14.2 0.4 0.091 13.5 0.4 1.3 1 0 0 1 1 1 0 zinc-ribbon family HscB_4_cys PF18256.1 gi|257389172|ref|YP_003178945.1| - 0.23 11.3 3.7 0.84 9.5 3.7 1.9 1 0 0 1 1 1 0 Co-chaperone HscB tetracysteine metal binding motif zf-ribbon_3 PF13248.6 gi|257389172|ref|YP_003178945.1| - 0.25 10.8 2.8 0.59 9.6 2.8 1.7 1 1 0 1 1 1 0 zinc-ribbon domain Nudix_N_2 PF14803.6 gi|257389172|ref|YP_003178945.1| - 0.4 10.7 4.1 0.16 11.9 0.3 2.3 2 0 0 2 2 2 0 Nudix N-terminal UPF0547 PF10571.9 gi|257389172|ref|YP_003178945.1| - 0.66 10.1 2.3 1.3 9.1 2.3 1.4 1 0 0 1 1 1 0 Uncharacterised protein family UPF0547 ELFV_dehydrog PF00208.21 gi|257389173|ref|YP_003178946.1| - 7.8e-72 241.9 1.1 1e-71 241.5 1.1 1.2 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 gi|257389173|ref|YP_003178946.1| - 1.6e-53 180.0 0.0 2.6e-53 179.3 0.0 1.3 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.19 gi|257389173|ref|YP_003178946.1| - 0.0002 20.7 2.1 0.0011 18.3 0.1 2.3 2 0 0 2 2 2 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Oxidored_nitro PF00148.19 gi|257389173|ref|YP_003178946.1| - 0.057 12.1 0.1 0.085 11.6 0.1 1.2 1 0 0 1 1 1 0 Nitrogenase component 1 type Oxidoreductase AdoHcyase_NAD PF00670.21 gi|257389173|ref|YP_003178946.1| - 0.069 13.2 0.3 0.12 12.5 0.3 1.4 1 0 0 1 1 1 0 S-adenosyl-L-homocysteine hydrolase, NAD binding domain GATase_2 PF00310.21 gi|257389174|ref|YP_003178947.1| - 4.6e-157 523.1 0.0 6.3e-157 522.6 0.0 1.2 1 0 0 1 1 1 1 Glutamine amidotransferases class-II Glu_synthase PF01645.17 gi|257389174|ref|YP_003178947.1| - 2.1e-147 491.1 0.6 1.6e-145 484.9 0.3 2.2 2 0 0 2 2 2 2 Conserved region in glutamate synthase Glu_syn_central PF04898.14 gi|257389174|ref|YP_003178947.1| - 1.7e-113 378.7 0.0 4.3e-113 377.4 0.0 1.6 2 0 0 2 2 2 1 Glutamate synthase central domain GXGXG PF01493.19 gi|257389174|ref|YP_003178947.1| - 8.9e-79 263.5 9.6 1.5e-78 262.8 9.6 1.3 1 0 0 1 1 1 1 GXGXG motif NMO PF03060.15 gi|257389174|ref|YP_003178947.1| - 0.0027 17.2 1.1 0.0049 16.3 1.1 1.3 1 0 0 1 1 1 1 Nitronate monooxygenase FMN_dh PF01070.18 gi|257389174|ref|YP_003178947.1| - 0.018 14.1 6.7 0.016 14.3 2.0 2.7 3 0 0 3 3 3 0 FMN-dependent dehydrogenase Epimerase PF01370.21 gi|257389175|ref|YP_003178948.1| - 1.7e-30 106.2 0.4 2.9e-28 99.0 0.4 2.1 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.17 gi|257389175|ref|YP_003178948.1| - 1.7e-08 33.9 0.1 0.0016 17.6 0.0 2.1 2 0 0 2 2 2 2 RmlD substrate binding domain GDP_Man_Dehyd PF16363.5 gi|257389175|ref|YP_003178948.1| - 3.1e-07 30.1 0.0 0.0025 17.3 0.0 2.2 1 1 0 2 2 2 2 GDP-mannose 4,6 dehydratase NAD_binding_10 PF13460.6 gi|257389175|ref|YP_003178948.1| - 1.7e-05 24.8 0.1 3e-05 24.0 0.1 1.5 1 0 0 1 1 1 1 NAD(P)H-binding 3Beta_HSD PF01073.19 gi|257389175|ref|YP_003178948.1| - 0.00035 19.7 0.0 0.019 14.0 0.0 2.1 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family adh_short PF00106.25 gi|257389175|ref|YP_003178948.1| - 0.00088 18.8 0.0 0.0018 17.8 0.0 1.5 1 0 0 1 1 1 1 short chain dehydrogenase CbiJ PF02571.14 gi|257389175|ref|YP_003178948.1| - 0.0021 17.6 0.0 0.0034 16.9 0.0 1.4 1 0 0 1 1 1 1 Precorrin-6x reductase CbiJ/CobK adh_short_C2 PF13561.6 gi|257389175|ref|YP_003178948.1| - 0.013 15.1 0.0 0.023 14.3 0.0 1.4 1 0 0 1 1 1 0 Enoyl-(Acyl carrier protein) reductase NmrA PF05368.13 gi|257389175|ref|YP_003178948.1| - 0.21 11.1 0.0 0.37 10.3 0.0 1.4 1 0 0 1 1 1 0 NmrA-like family VATC PF18716.1 gi|257389176|ref|YP_003178949.1| - 0.19 11.6 2.6 0.21 11.5 0.1 2.0 3 0 0 3 3 3 0 Vms1-associating treble clef domain zf-FCS PF06467.14 gi|257389176|ref|YP_003178949.1| - 0.24 11.4 3.2 0.8 9.7 3.2 1.8 1 1 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif DUF2768 PF10966.8 gi|257389177|ref|YP_003178950.1| - 0.027 14.9 5.4 0.031 14.7 0.1 3.2 3 0 0 3 3 3 0 Protein of unknown function (DUF2768) Fe-ADH_2 PF13685.6 gi|257389178|ref|YP_003178951.1| - 1.6e-61 208.2 3.5 2e-61 207.8 3.5 1.1 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH PF00465.19 gi|257389178|ref|YP_003178951.1| - 2.7e-20 72.5 6.9 1.6e-19 70.0 6.9 1.8 1 1 0 1 1 1 1 Iron-containing alcohol dehydrogenase DHQ_synthase PF01761.20 gi|257389178|ref|YP_003178951.1| - 3.4e-09 36.3 0.2 8.4e-09 35.0 0.2 1.5 1 1 0 1 1 1 1 3-dehydroquinate synthase Peptidase_S9 PF00326.21 gi|257389180|ref|YP_003178953.1| - 7.7e-47 159.5 0.0 1.4e-46 158.7 0.0 1.4 1 0 0 1 1 1 1 Prolyl oligopeptidase family DLH PF01738.18 gi|257389180|ref|YP_003178953.1| - 6.7e-12 45.4 0.0 1.9e-11 43.9 0.0 1.6 1 1 0 1 1 1 1 Dienelactone hydrolase family Abhydrolase_1 PF00561.20 gi|257389180|ref|YP_003178953.1| - 1.4e-10 41.2 0.2 4.7e-05 23.2 0.1 2.3 1 1 1 2 2 2 2 alpha/beta hydrolase fold Peptidase_S15 PF02129.18 gi|257389180|ref|YP_003178953.1| - 6.3e-09 35.8 0.0 1.3e-05 24.9 0.0 2.2 1 1 1 2 2 2 2 X-Pro dipeptidyl-peptidase (S15 family) Hydrolase_4 PF12146.8 gi|257389180|ref|YP_003178953.1| - 1.9e-08 33.9 0.2 0.0018 17.6 0.1 2.3 2 0 0 2 2 2 2 Serine aminopeptidase, S33 Peptidase_S9_N PF02897.15 gi|257389180|ref|YP_003178953.1| - 7e-07 28.4 0.0 9.7e-07 27.9 0.0 1.2 1 0 0 1 1 1 1 Prolyl oligopeptidase, N-terminal beta-propeller domain AXE1 PF05448.12 gi|257389180|ref|YP_003178953.1| - 3e-06 26.2 0.0 0.0007 18.4 0.0 2.2 1 1 0 1 1 1 1 Acetyl xylan esterase (AXE1) PD40 PF07676.12 gi|257389180|ref|YP_003178953.1| - 4.7e-06 26.4 10.2 4e-05 23.4 0.2 5.1 5 0 0 5 5 5 1 WD40-like Beta Propeller Repeat Abhydrolase_3 PF07859.13 gi|257389180|ref|YP_003178953.1| - 7.2e-05 22.7 0.1 0.0033 17.3 0.1 2.2 1 1 0 1 1 1 1 alpha/beta hydrolase fold DPPIV_N PF00930.21 gi|257389180|ref|YP_003178953.1| - 0.00098 18.0 0.0 1.6 7.4 0.0 3.6 2 1 1 4 4 4 1 Dipeptidyl peptidase IV (DPP IV) N-terminal region Abhydrolase_4 PF08386.10 gi|257389180|ref|YP_003178953.1| - 0.0047 17.0 0.0 0.0095 16.0 0.0 1.4 1 0 0 1 1 1 1 TAP-like protein Abhydrolase_2 PF02230.16 gi|257389180|ref|YP_003178953.1| - 0.016 15.0 0.0 0.62 9.8 0.0 2.1 2 0 0 2 2 2 0 Phospholipase/Carboxylesterase BAAT_C PF08840.11 gi|257389180|ref|YP_003178953.1| - 0.038 13.9 0.0 3.1 7.7 0.0 2.2 2 0 0 2 2 2 0 BAAT / Acyl-CoA thioester hydrolase C terminal Esterase PF00756.20 gi|257389180|ref|YP_003178953.1| - 0.13 11.9 0.0 0.54 9.9 0.0 1.9 2 0 0 2 2 2 0 Putative esterase Peptidase_S28 PF05577.12 gi|257389180|ref|YP_003178953.1| - 0.25 10.1 0.0 0.36 9.6 0.0 1.1 1 0 0 1 1 1 0 Serine carboxypeptidase S28 TAT_signal PF10518.9 gi|257389181|ref|YP_003178954.1| - 0.019 14.8 1.8 0.019 14.8 1.8 2.2 3 0 0 3 3 3 0 TAT (twin-arginine translocation) pathway signal sequence UCR_Fe-S_N PF10399.9 gi|257389181|ref|YP_003178954.1| - 0.053 12.9 1.8 0.11 11.8 1.8 1.6 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Yip1 PF04893.17 gi|257389182|ref|YP_003178955.1| - 9e-16 58.1 18.1 1.6e-15 57.3 18.1 1.3 1 1 0 1 1 1 1 Yip1 domain Glycos_transf_1 PF00534.20 gi|257389183|ref|YP_003178956.1| - 5.2e-14 52.2 0.0 8.9e-14 51.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.6 gi|257389183|ref|YP_003178956.1| - 9.1e-14 51.8 0.5 2.7e-13 50.3 0.5 1.8 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_4_4 PF13579.6 gi|257389183|ref|YP_003178956.1| - 2.8e-12 47.4 7.7 2.8e-12 47.4 7.7 2.7 3 0 0 3 3 3 1 Glycosyl transferase 4-like domain Glyco_trans_1_4 PF13692.6 gi|257389183|ref|YP_003178956.1| - 2.6e-11 44.1 0.0 6.5e-11 42.8 0.0 1.6 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.6 gi|257389183|ref|YP_003178956.1| - 0.053 13.5 0.0 0.12 12.4 0.0 1.6 1 1 0 1 1 1 0 Glycosyl transferase 4-like UPF0180 PF03698.13 gi|257389183|ref|YP_003178956.1| - 0.13 12.5 0.0 6.8 7.0 0.0 2.3 2 0 0 2 2 2 0 Uncharacterised protein family (UPF0180) MCPsignal PF00015.21 gi|257389184|ref|YP_003178957.1| - 4.6e-37 127.5 18.6 4.6e-37 127.5 18.6 4.6 2 2 3 5 5 5 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.25 gi|257389184|ref|YP_003178957.1| - 1.3e-11 44.7 21.0 7.3e-11 42.3 0.6 5.4 5 0 0 5 5 4 2 HAMP domain dCache_1 PF02743.18 gi|257389184|ref|YP_003178957.1| - 4.6e-07 29.9 0.0 4.6e-07 29.9 0.0 3.6 3 1 1 4 4 4 1 Cache domain AAA_13 PF13166.6 gi|257389184|ref|YP_003178957.1| - 3.1e-05 22.9 27.9 0.00018 20.4 15.2 2.2 1 1 1 2 2 2 2 AAA domain DUF948 PF06103.11 gi|257389184|ref|YP_003178957.1| - 0.00044 20.4 30.3 1.3 9.3 2.7 6.6 4 2 1 5 5 5 3 Bacterial protein of unknown function (DUF948) DUF1664 PF07889.12 gi|257389184|ref|YP_003178957.1| - 0.00088 19.3 30.9 0.035 14.2 2.0 5.7 2 2 4 6 6 6 3 Protein of unknown function (DUF1664) DASH_Dam1 PF08653.10 gi|257389184|ref|YP_003178957.1| - 0.028 14.2 1.4 5.5 6.9 0.1 4.2 5 0 0 5 5 4 0 DASH complex subunit Dam1 IFT57 PF10498.9 gi|257389184|ref|YP_003178957.1| - 0.028 13.4 18.9 0.24 10.3 0.9 3.2 1 1 0 2 2 2 0 Intra-flagellar transport protein 57 Corona_S2 PF01601.16 gi|257389184|ref|YP_003178957.1| - 0.032 12.7 0.4 0.062 11.8 0.4 1.4 1 0 0 1 1 1 0 Coronavirus S2 glycoprotein Syntaxin-6_N PF09177.11 gi|257389184|ref|YP_003178957.1| - 0.034 14.7 0.7 0.034 14.7 0.7 5.4 2 2 2 4 4 4 0 Syntaxin 6, N-terminal Fib_alpha PF08702.10 gi|257389184|ref|YP_003178957.1| - 0.038 14.2 18.7 0.93 9.7 0.6 4.9 2 2 3 5 5 5 0 Fibrinogen alpha/beta chain family BLOC1_2 PF10046.9 gi|257389184|ref|YP_003178957.1| - 0.13 12.6 26.3 1.2 9.4 1.2 6.7 3 2 4 7 7 7 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 Spc7 PF08317.11 gi|257389184|ref|YP_003178957.1| - 0.13 11.1 29.3 0.79 8.5 7.4 3.4 2 1 1 3 3 3 0 Spc7 kinetochore protein SfLAP PF11139.8 gi|257389184|ref|YP_003178957.1| - 0.15 11.5 0.1 0.38 10.2 0.0 1.7 2 0 0 2 2 2 0 Sap, sulfolipid-1-addressing protein SKA2 PF16740.5 gi|257389184|ref|YP_003178957.1| - 0.19 11.6 9.2 4.4 7.1 0.0 4.8 3 1 0 5 5 5 0 Spindle and kinetochore-associated protein 2 Fungal_trans_2 PF11951.8 gi|257389184|ref|YP_003178957.1| - 0.2 10.4 0.3 0.93 8.2 0.0 2.1 1 1 1 2 2 2 0 Fungal specific transcription factor domain DASH_Duo1 PF08651.10 gi|257389184|ref|YP_003178957.1| - 0.23 11.2 10.3 0.19 11.5 0.1 4.8 5 1 1 6 6 6 0 DASH complex subunit Duo1 AIP3 PF03915.13 gi|257389184|ref|YP_003178957.1| - 0.24 10.4 29.1 0.01 15.0 2.2 2.5 1 1 1 2 2 2 0 Actin interacting protein 3 HapK PF11639.8 gi|257389184|ref|YP_003178957.1| - 0.28 11.7 2.8 0.46 11.0 0.2 2.7 2 1 0 2 2 2 0 REDY-like protein HapK LMBR1 PF04791.16 gi|257389184|ref|YP_003178957.1| - 0.3 10.0 11.7 0.14 11.1 4.2 2.9 1 1 0 2 2 2 0 LMBR1-like membrane protein COG2 PF06148.11 gi|257389184|ref|YP_003178957.1| - 0.45 10.6 23.6 2.3 8.3 0.7 5.4 2 2 3 5 5 5 0 COG (conserved oligomeric Golgi) complex component, COG2 Dynamin_M PF01031.20 gi|257389184|ref|YP_003178957.1| - 1.3 8.2 3.7 0.59 9.3 0.5 2.0 2 1 0 2 2 2 0 Dynamin central region Laminin_II PF06009.12 gi|257389184|ref|YP_003178957.1| - 1.5 8.9 35.2 0.64 10.0 5.4 5.4 2 2 4 6 6 6 0 Laminin Domain II CK2S PF15011.6 gi|257389184|ref|YP_003178957.1| - 1.7 8.5 7.8 7.2 6.5 3.7 3.0 1 1 1 2 2 2 0 Casein Kinase 2 substrate RPW8 PF05659.11 gi|257389184|ref|YP_003178957.1| - 2.2 8.0 7.7 3.4 7.3 0.1 4.0 3 2 1 5 5 4 0 Arabidopsis broad-spectrum mildew resistance protein RPW8 Bacillus_HBL PF05791.11 gi|257389184|ref|YP_003178957.1| - 2.3 8.0 8.7 0.98 9.2 0.1 3.5 3 2 2 5 5 4 0 Bacillus haemolytic enterotoxin (HBL) TBK1_CCD1 PF18394.1 gi|257389184|ref|YP_003178957.1| - 2.4 7.7 6.1 2.4 7.7 0.7 2.8 2 1 0 2 2 2 0 TANK-binding kinase 1 coiled-coil domain 1 V_ATPase_I PF01496.19 gi|257389184|ref|YP_003178957.1| - 3.3 5.5 20.0 0.026 12.5 6.1 2.8 2 1 1 3 3 3 0 V-type ATPase 116kDa subunit family Fzo_mitofusin PF04799.13 gi|257389184|ref|YP_003178957.1| - 4.9 6.7 15.7 24 4.5 0.2 5.3 4 2 2 6 6 5 0 fzo-like conserved region Herpes_UL6 PF01763.16 gi|257389184|ref|YP_003178957.1| - 6.4 5.2 13.0 0.25 9.8 3.4 2.4 2 1 0 2 2 2 0 Herpesvirus UL6 like DUF3829 PF12889.7 gi|257389184|ref|YP_003178957.1| - 7.9 5.9 16.5 0.085 12.3 0.9 3.8 2 2 2 4 4 4 0 Protein of unknown function (DUF3829) DUF16 PF01519.16 gi|257389184|ref|YP_003178957.1| - 9.4 6.8 18.1 15 6.1 3.0 4.7 2 2 2 4 4 4 0 Protein of unknown function DUF16 BAR_2 PF10455.9 gi|257389184|ref|YP_003178957.1| - 9.4 5.3 19.9 0.065 12.4 4.6 2.9 2 1 1 3 3 3 0 Bin/amphiphysin/Rvs domain for vesicular trafficking ERCC3_RAD25_C PF16203.5 gi|257389185|ref|YP_003178958.1| - 2.5e-25 89.1 0.0 4e-25 88.5 0.0 1.2 1 0 0 1 1 1 1 ERCC3/RAD25/XPB C-terminal helicase Helicase_C PF00271.31 gi|257389185|ref|YP_003178958.1| - 2.8e-13 50.2 0.0 2.6e-12 47.1 0.0 2.2 2 0 0 2 2 2 1 Helicase conserved C-terminal domain ResIII PF04851.15 gi|257389185|ref|YP_003178958.1| - 2.4e-12 47.2 0.0 5e-12 46.1 0.0 1.5 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit SNF2_N PF00176.23 gi|257389185|ref|YP_003178958.1| - 3.3e-10 39.2 0.0 4.1e-10 38.9 0.0 1.2 1 0 0 1 1 1 1 SNF2 family N-terminal domain DEAD PF00270.29 gi|257389185|ref|YP_003178958.1| - 0.00041 20.1 0.0 0.00085 19.1 0.0 1.6 1 0 0 1 1 1 1 DEAD/DEAH box helicase AAA_30 PF13604.6 gi|257389185|ref|YP_003178958.1| - 0.0029 17.3 0.0 0.0073 16.0 0.0 1.7 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|257389185|ref|YP_003178958.1| - 0.0069 16.7 0.4 0.061 13.6 0.2 2.6 2 1 0 2 2 1 1 AAA domain AAA_33 PF13671.6 gi|257389185|ref|YP_003178958.1| - 0.0097 16.1 0.4 0.069 13.3 0.0 2.6 4 0 0 4 4 4 1 AAA domain AAA PF00004.29 gi|257389185|ref|YP_003178958.1| - 0.032 14.7 0.0 0.098 13.1 0.0 1.8 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_11 PF13086.6 gi|257389185|ref|YP_003178958.1| - 0.085 12.6 0.0 0.15 11.8 0.0 1.4 1 0 0 1 1 1 0 AAA domain TsaE PF02367.17 gi|257389185|ref|YP_003178958.1| - 0.13 12.3 0.0 0.48 10.4 0.0 1.9 2 0 0 2 2 2 0 Threonylcarbamoyl adenosine biosynthesis protein TsaE AAA_5 PF07728.14 gi|257389185|ref|YP_003178958.1| - 0.18 11.8 0.3 1.4 9.0 0.1 2.5 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) Pterin_bind PF00809.22 gi|257389186|ref|YP_003178959.1| - 2.3e-73 246.9 0.5 3.4e-73 246.3 0.5 1.3 1 0 0 1 1 1 1 Pterin binding enzyme Mur_ligase_M PF08245.12 gi|257389186|ref|YP_003178959.1| - 6.8e-10 39.2 0.0 1.2e-09 38.5 0.0 1.4 1 0 0 1 1 1 1 Mur ligase middle domain Mur_ligase_C PF02875.21 gi|257389186|ref|YP_003178959.1| - 7.5e-09 35.7 0.0 2e-08 34.4 0.0 1.8 1 0 0 1 1 1 1 Mur ligase family, glutamate ligase domain PEP_mutase PF13714.6 gi|257389186|ref|YP_003178959.1| - 0.00057 19.4 2.4 0.045 13.2 0.9 3.3 2 1 0 2 2 2 1 Phosphoenolpyruvate phosphomutase CAT_RBD PF03123.15 gi|257389186|ref|YP_003178959.1| - 0.15 12.1 0.0 0.33 10.9 0.0 1.5 1 0 0 1 1 1 0 CAT RNA binding domain FlgD_ig PF13860.6 gi|257389186|ref|YP_003178959.1| - 0.6 10.0 5.1 17 5.4 0.0 3.5 3 0 0 3 3 3 0 FlgD Ig-like domain Glyco_hydro_18 PF00704.28 gi|257389187|ref|YP_003178960.1| - 1.3e-61 209.1 0.0 2.1e-61 208.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl hydrolases family 18 CBM_5_12 PF02839.14 gi|257389187|ref|YP_003178960.1| - 2.6e-09 37.1 17.5 0.00014 22.3 4.2 3.3 2 0 0 2 2 2 2 Carbohydrate binding domain PKD PF00801.20 gi|257389187|ref|YP_003178960.1| - 3.4e-08 33.2 2.8 1.5e-07 31.2 2.8 2.2 1 0 0 1 1 1 1 PKD domain REJ PF02010.15 gi|257389187|ref|YP_003178960.1| - 0.0083 15.0 0.1 0.2 10.4 0.1 2.1 1 1 0 1 1 1 1 REJ domain CBM_5_12_2 PF14600.6 gi|257389187|ref|YP_003178960.1| - 0.014 15.3 11.0 0.076 13.0 1.2 3.0 2 0 0 2 2 2 0 Cellulose-binding domain ChitinaseA_N PF08329.10 gi|257389187|ref|YP_003178960.1| - 0.016 14.8 0.1 0.036 13.7 0.1 1.5 1 0 0 1 1 1 0 Chitinase A, N-terminal domain gp37_C PF12604.8 gi|257389187|ref|YP_003178960.1| - 0.027 14.2 0.2 5.9 6.6 0.0 2.5 2 0 0 2 2 2 0 Tail fibre protein gp37 C terminal PKD_3 PF16820.5 gi|257389187|ref|YP_003178960.1| - 0.049 13.4 0.1 0.094 12.5 0.1 1.5 1 0 0 1 1 1 0 PKD-like domain Cadherin PF00028.17 gi|257389187|ref|YP_003178960.1| - 0.19 12.2 0.0 0.41 11.1 0.0 1.6 1 0 0 1 1 1 0 Cadherin domain AstA PF04958.12 gi|257389187|ref|YP_003178960.1| - 0.27 9.8 0.0 0.4 9.2 0.0 1.2 1 0 0 1 1 1 0 Arginine N-succinyltransferase beta subunit Cadherin_5 PF17892.1 gi|257389187|ref|YP_003178960.1| - 0.27 11.2 3.3 0.82 9.7 3.3 1.9 1 1 0 1 1 1 0 Cadherin-like domain UCR_Fe-S_N PF10399.9 gi|257389187|ref|YP_003178960.1| - 0.67 9.3 3.9 1.8 8.0 3.9 1.8 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal SHOCT PF09851.9 gi|257389189|ref|YP_003178962.1| - 1.5e-07 30.9 2.2 2.9e-07 30.0 2.2 1.5 1 0 0 1 1 1 1 Short C-terminal domain Phage_holin_8 PF16931.5 gi|257389189|ref|YP_003178962.1| - 0.0078 16.2 8.1 0.012 15.6 8.1 1.3 1 0 0 1 1 1 1 Putative phage holin GvpG PF05120.12 gi|257389189|ref|YP_003178962.1| - 0.09 12.8 0.3 0.17 11.9 0.3 1.5 1 0 0 1 1 1 0 Gas vesicle protein G TMEM125 PF15109.6 gi|257389189|ref|YP_003178962.1| - 0.93 9.8 6.0 1.4 9.3 6.0 1.3 1 0 0 1 1 1 0 TMEM125 protein family PAS_4 PF08448.10 gi|257389190|ref|YP_003178963.1| - 8.6e-80 264.2 20.7 2.8e-21 75.8 0.0 7.5 7 0 0 7 7 7 6 PAS fold PAS_9 PF13426.7 gi|257389190|ref|YP_003178963.1| - 4.1e-53 178.0 2.3 9.8e-14 51.5 0.0 6.8 7 0 0 7 7 7 5 PAS domain PAS_3 PF08447.12 gi|257389190|ref|YP_003178963.1| - 9.7e-49 163.6 6.2 3.1e-14 53.0 0.1 6.4 6 1 0 6 6 6 4 PAS fold PAS PF00989.25 gi|257389190|ref|YP_003178963.1| - 4.2e-48 162.0 5.5 7e-22 77.6 0.0 6.4 6 0 0 6 6 6 4 PAS fold BAT PF15915.5 gi|257389190|ref|YP_003178963.1| - 4.8e-38 130.5 12.5 4.8e-38 130.5 12.5 4.9 5 0 0 5 5 5 1 GAF and HTH_10 associated domain GAF_2 PF13185.6 gi|257389190|ref|YP_003178963.1| - 1.1e-27 97.1 18.7 1.6e-13 51.2 1.5 6.2 6 1 1 7 7 7 3 GAF domain PAS_8 PF13188.7 gi|257389190|ref|YP_003178963.1| - 2.9e-20 71.8 0.2 3.2e-10 39.8 0.0 5.5 5 0 0 5 5 5 3 PAS domain GAF_3 PF13492.6 gi|257389190|ref|YP_003178963.1| - 7.4e-18 65.1 2.1 4.1e-06 27.2 0.0 6.5 6 0 0 6 6 6 2 GAF domain HTH_10 PF04967.12 gi|257389190|ref|YP_003178963.1| - 2.5e-15 56.0 0.0 6.4e-15 54.7 0.0 1.8 1 0 0 1 1 1 1 HTH DNA binding domain GAF PF01590.26 gi|257389190|ref|YP_003178963.1| - 4.6e-14 53.2 0.3 2.5e-06 28.1 0.0 5.1 5 0 0 5 5 5 2 GAF domain PAS_10 PF13596.6 gi|257389190|ref|YP_003178963.1| - 2.5e-11 44.1 0.1 0.00036 21.1 0.0 4.1 4 0 0 4 4 3 2 PAS domain HAMP PF00672.25 gi|257389190|ref|YP_003178963.1| - 4.3e-06 27.0 1.8 9.7e-06 25.9 0.2 2.5 2 0 0 2 2 2 1 HAMP domain Sigma70_r4 PF04545.16 gi|257389190|ref|YP_003178963.1| - 0.00035 20.0 0.0 0.0012 18.3 0.0 2.0 1 0 0 1 1 1 1 Sigma-70, region 4 PAS_7 PF12860.7 gi|257389190|ref|YP_003178963.1| - 0.0018 18.4 8.7 0.089 13.0 0.0 6.0 6 2 0 6 6 6 1 PAS fold HTH_5 PF01022.20 gi|257389190|ref|YP_003178963.1| - 0.0076 16.1 0.0 0.018 14.9 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_24 PF13412.6 gi|257389190|ref|YP_003178963.1| - 0.033 13.7 0.0 0.082 12.5 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding sCache_3_3 PF17202.4 gi|257389190|ref|YP_003178963.1| - 0.057 13.8 0.0 6.1 7.3 0.0 3.3 3 0 0 3 3 3 0 Single cache domain 3 HTH_11 PF08279.12 gi|257389190|ref|YP_003178963.1| - 0.13 12.2 0.0 0.3 11.0 0.0 1.6 1 0 0 1 1 1 0 HTH domain DUF3369 PF11849.8 gi|257389190|ref|YP_003178963.1| - 0.14 12.3 0.0 3.8 7.7 0.0 3.0 3 1 0 3 3 2 0 Domain of unknown function (DUF3369) HalOD1 PF18545.1 gi|257389191|ref|YP_003178964.1| - 2.5e-21 75.7 1.0 3.1e-21 75.4 1.0 1.1 1 0 0 1 1 1 1 Halobacterial output domain 1 Rio2_N PF09202.11 gi|257389191|ref|YP_003178964.1| - 0.11 12.7 0.0 0.12 12.6 0.0 1.5 1 1 0 1 1 1 0 Rio2, N-terminal LSM PF01423.22 gi|257389192|ref|YP_003178965.1| - 0.14 11.9 0.0 0.2 11.4 0.0 1.4 2 0 0 2 2 2 0 LSM domain PAS_4 PF08448.10 gi|257389193|ref|YP_003178966.1| - 2.3e-07 31.0 1.1 1.7e-06 28.2 0.1 2.2 2 1 0 2 2 2 1 PAS fold PAS_9 PF13426.7 gi|257389193|ref|YP_003178966.1| - 0.0015 18.7 0.0 0.0038 17.4 0.0 1.7 2 0 0 2 2 2 1 PAS domain Response_reg PF00072.24 gi|257389193|ref|YP_003178966.1| - 0.0026 17.9 0.0 0.0045 17.1 0.0 1.4 1 0 0 1 1 1 1 Response regulator receiver domain PAS PF00989.25 gi|257389193|ref|YP_003178966.1| - 0.037 14.0 0.0 0.07 13.1 0.0 1.5 1 0 0 1 1 1 0 PAS fold AICARFT_IMPCHas PF01808.18 gi|257389194|ref|YP_003178967.1| - 1.6e-85 287.2 0.0 2.1e-85 286.7 0.0 1.1 1 0 0 1 1 1 1 AICARFT/IMPCHase bienzyme Formyl_trans_N PF00551.19 gi|257389194|ref|YP_003178967.1| - 3.5e-42 144.2 0.0 6e-42 143.4 0.0 1.4 1 0 0 1 1 1 1 Formyl transferase DRTGG PF07085.12 gi|257389194|ref|YP_003178967.1| - 0.092 12.5 0.0 0.42 10.4 0.0 2.2 2 0 0 2 2 2 0 DRTGG domain PrsW-protease PF13367.6 gi|257389196|ref|YP_003178969.1| - 7.8e-44 149.5 12.3 7.8e-44 149.5 12.3 1.6 2 0 0 2 2 2 1 PrsW family intramembrane metalloprotease SecE PF00584.20 gi|257389196|ref|YP_003178969.1| - 0.033 14.1 0.3 0.033 14.1 0.3 3.3 4 0 0 4 4 4 0 SecE/Sec61-gamma subunits of protein translocation complex Phage_holin_4_2 PF04020.13 gi|257389196|ref|YP_003178969.1| - 7 7.4 25.0 2.8 8.6 7.4 3.2 2 1 0 3 3 3 0 Mycobacterial 4 TMS phage holin, superfamily IV Lyase_1 PF00206.20 gi|257389197|ref|YP_003178970.1| - 4.3e-46 157.8 0.0 5.9e-46 157.3 0.0 1.2 1 0 0 1 1 1 1 Lyase ASL_C PF08328.11 gi|257389197|ref|YP_003178970.1| - 1.4e-42 144.5 0.0 2.5e-42 143.6 0.0 1.5 1 0 0 1 1 1 1 Adenylosuccinate lyase C-terminal HTH_20 PF12840.7 gi|257389198|ref|YP_003178971.1| - 4.7e-07 29.8 0.2 7.8e-07 29.1 0.2 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain KdpD PF02702.17 gi|257389198|ref|YP_003178971.1| - 0.037 13.5 0.4 1 8.8 0.1 2.0 2 0 0 2 2 2 0 Osmosensitive K+ channel His kinase sensor domain MarR_2 PF12802.7 gi|257389198|ref|YP_003178971.1| - 0.078 12.9 0.1 0.69 9.8 0.1 2.2 1 1 0 1 1 1 0 MarR family MFS_1 PF07690.16 gi|257389200|ref|YP_003178973.1| - 5.8e-48 163.6 60.9 4.7e-24 85.0 30.5 2.6 2 1 0 2 2 2 2 Major Facilitator Superfamily MFS_1_like PF12832.7 gi|257389200|ref|YP_003178973.1| - 1.2e-12 47.4 16.7 6.2e-09 35.2 6.8 3.4 2 2 1 3 3 3 3 MFS_1 like family Sugar_tr PF00083.24 gi|257389200|ref|YP_003178973.1| - 3.2e-12 46.1 25.6 1.1e-08 34.3 4.4 2.5 2 1 1 3 3 3 2 Sugar (and other) transporter MFS_3 PF05977.13 gi|257389200|ref|YP_003178973.1| - 6e-06 24.9 20.1 0.0018 16.8 7.8 2.6 2 1 0 2 2 2 2 Transmembrane secretion effector TRI12 PF06609.13 gi|257389200|ref|YP_003178973.1| - 0.00054 18.5 8.7 0.0095 14.4 2.7 2.3 2 0 0 2 2 2 2 Fungal trichothecene efflux pump (TRI12) MFS_4 PF06779.14 gi|257389200|ref|YP_003178973.1| - 0.092 12.0 33.2 1.4 8.1 33.2 2.6 1 1 0 1 1 1 0 Uncharacterised MFS-type transporter YbfB Abhydrolase_6 PF12697.7 gi|257389201|ref|YP_003178974.1| - 4.9e-13 50.2 10.5 6.2e-13 49.9 10.5 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_1 PF00561.20 gi|257389201|ref|YP_003178974.1| - 1.6e-11 44.3 0.1 3.5e-11 43.2 0.1 1.5 2 0 0 2 2 2 1 alpha/beta hydrolase fold Hydrolase_4 PF12146.8 gi|257389201|ref|YP_003178974.1| - 8.5e-08 31.8 0.0 1.4e-07 31.0 0.0 1.3 1 0 0 1 1 1 1 Serine aminopeptidase, S33 DUF1057 PF06342.12 gi|257389201|ref|YP_003178974.1| - 0.00014 21.1 0.0 0.00022 20.4 0.0 1.2 1 0 0 1 1 1 1 Alpha/beta hydrolase of unknown function (DUF1057) SPDY PF03771.16 gi|257389201|ref|YP_003178974.1| - 0.0076 16.2 5.7 0.024 14.5 1.6 3.0 1 1 1 2 2 2 1 Domain of unknown function (DUF317) HTH_10 PF04967.12 gi|257389202|ref|YP_003178975.1| - 1.8e-13 50.0 0.1 2.8e-13 49.5 0.1 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Pribosyltran PF00156.27 gi|257389203|ref|YP_003178976.1| - 6.2e-24 84.3 0.3 8.9e-23 80.6 0.3 1.9 1 1 0 1 1 1 1 Phosphoribosyl transferase domain M20_dimer PF07687.14 gi|257389204|ref|YP_003178977.1| - 4.4e-25 87.7 0.0 1.1e-24 86.5 0.0 1.7 1 0 0 1 1 1 1 Peptidase dimerisation domain Peptidase_M20 PF01546.28 gi|257389204|ref|YP_003178977.1| - 2.3e-23 83.0 0.0 6.2e-23 81.6 0.0 1.7 2 1 0 2 2 2 1 Peptidase family M20/M25/M40 Orn_Arg_deC_N PF02784.16 gi|257389205|ref|YP_003178978.1| - 5.1e-40 137.4 0.0 6.4e-40 137.1 0.0 1.1 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Orn_DAP_Arg_deC PF00278.22 gi|257389205|ref|YP_003178978.1| - 1.2e-19 70.4 0.0 1.2e-19 70.4 0.0 1.3 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Ferritin_2 PF13668.6 gi|257389206|ref|YP_003178979.1| - 7.4e-40 136.3 1.5 9.8e-40 135.9 1.5 1.2 1 0 0 1 1 1 1 Ferritin-like domain Rubrerythrin PF02915.17 gi|257389206|ref|YP_003178979.1| - 0.0026 18.2 0.2 1.2 9.6 0.3 2.9 2 1 0 2 2 2 1 Rubrerythrin DUF2383 PF09537.10 gi|257389206|ref|YP_003178979.1| - 0.0029 17.9 0.0 0.047 14.0 0.0 2.2 2 0 0 2 2 2 1 Domain of unknown function (DUF2383) Ferritin PF00210.24 gi|257389206|ref|YP_003178979.1| - 0.014 15.3 0.0 0.029 14.3 0.0 1.5 1 0 0 1 1 1 0 Ferritin-like domain THDPS_N_2 PF14805.6 gi|257389207|ref|YP_003178980.1| - 1.5e-22 79.6 1.6 2.4e-22 78.9 1.6 1.3 1 0 0 1 1 1 1 Tetrahydrodipicolinate N-succinyltransferase N-terminal Hexapep PF00132.24 gi|257389207|ref|YP_003178980.1| - 2.4e-11 42.9 7.2 0.00029 20.4 0.5 3.5 3 0 0 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.6 gi|257389207|ref|YP_003178980.1| - 0.0001 21.9 10.7 0.002 17.8 1.1 3.4 3 1 1 4 4 4 2 Hexapeptide repeat of succinyl-transferase DapB_C PF05173.14 gi|257389209|ref|YP_003178982.1| - 6.2e-34 116.6 0.0 8.9e-34 116.1 0.0 1.2 1 0 0 1 1 1 1 Dihydrodipicolinate reductase, C-terminus DapB_N PF01113.20 gi|257389209|ref|YP_003178982.1| - 2.7e-23 82.4 0.1 9.5e-23 80.7 0.1 1.9 2 0 0 2 2 2 1 Dihydrodipicolinate reductase, N-terminus NAD_binding_3 PF03447.16 gi|257389209|ref|YP_003178982.1| - 0.0059 17.3 0.3 0.013 16.1 0.3 1.6 1 0 0 1 1 1 1 Homoserine dehydrogenase, NAD binding domain Sacchrp_dh_NADP PF03435.18 gi|257389209|ref|YP_003178982.1| - 0.042 14.1 0.6 0.23 11.7 0.6 2.1 1 1 0 1 1 1 0 Saccharopine dehydrogenase NADP binding domain CoA_binding_2 PF13380.6 gi|257389209|ref|YP_003178982.1| - 0.089 13.3 1.1 1.1 9.8 0.6 2.4 2 1 0 2 2 2 0 CoA binding domain CoA_binding PF02629.19 gi|257389209|ref|YP_003178982.1| - 0.14 12.8 0.1 0.25 12.0 0.1 1.4 1 0 0 1 1 1 0 CoA binding domain DHDPS PF00701.22 gi|257389210|ref|YP_003178983.1| - 3.1e-91 305.1 0.0 3.5e-91 304.9 0.0 1.0 1 0 0 1 1 1 1 Dihydrodipicolinate synthetase family Peripla_BP_1 PF00532.21 gi|257389210|ref|YP_003178983.1| - 0.069 12.6 0.0 0.13 11.7 0.0 1.4 1 0 0 1 1 1 0 Periplasmic binding proteins and sugar binding domain of LacI family Asp_Glu_race PF01177.22 gi|257389210|ref|YP_003178983.1| - 0.11 12.4 0.0 0.21 11.4 0.0 1.5 1 0 0 1 1 1 0 Asp/Glu/Hydantoin racemase DUF2334 PF10096.9 gi|257389211|ref|YP_003178984.1| - 0.03 14.0 0.0 0.08 12.6 0.0 1.8 1 1 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2334) Acetyltransf_6 PF13480.7 gi|257389212|ref|YP_003178985.1| - 9.2e-22 77.7 0.2 3.5e-21 75.8 0.3 1.8 2 0 0 2 2 2 1 Acetyltransferase (GNAT) domain FemAB PF02388.16 gi|257389212|ref|YP_003178985.1| - 0.0034 16.3 0.0 0.041 12.8 0.0 2.0 1 1 1 2 2 2 1 FemAB family DUF3640 PF12342.8 gi|257389212|ref|YP_003178985.1| - 0.32 10.8 1.1 0.57 10.0 0.1 1.9 2 0 0 2 2 2 0 Protein of unknown function (DUF3640) Glyco_hydro_3 PF00933.21 gi|257389213|ref|YP_003178986.1| - 1.1e-103 347.0 0.0 1.5e-103 346.5 0.0 1.2 1 0 0 1 1 1 1 Glycosyl hydrolase family 3 N terminal domain Bmp PF02608.14 gi|257389214|ref|YP_003178987.1| - 9.2e-41 139.8 7.0 1.9e-40 138.7 7.0 1.4 1 1 0 1 1 1 1 ABC transporter substrate-binding protein PnrA-like TAT_signal PF10518.9 gi|257389214|ref|YP_003178987.1| - 3.7e-05 23.4 0.5 3.7e-05 23.4 0.5 2.4 2 0 0 2 2 2 1 TAT (twin-arginine translocation) pathway signal sequence ABC_tran PF00005.27 gi|257389215|ref|YP_003178988.1| - 1.1e-45 155.5 0.0 4.7e-29 101.6 0.0 2.3 2 0 0 2 2 2 2 ABC transporter AAA_21 PF13304.6 gi|257389215|ref|YP_003178988.1| - 4.3e-10 39.9 0.1 0.001 19.0 0.0 2.5 2 1 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_15 PF13175.6 gi|257389215|ref|YP_003178988.1| - 0.00033 20.5 0.0 0.13 12.0 0.0 2.1 1 1 0 2 2 2 2 AAA ATPase domain AAA_29 PF13555.6 gi|257389215|ref|YP_003178988.1| - 0.0021 17.7 0.5 0.021 14.5 0.0 2.7 3 0 0 3 3 3 1 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|257389215|ref|YP_003178988.1| - 0.0098 15.6 0.1 0.033 13.9 0.0 1.9 2 0 0 2 2 2 1 AAA domain AAA_23 PF13476.6 gi|257389215|ref|YP_003178988.1| - 0.014 15.9 0.0 0.027 15.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain Bac_DnaA PF00308.18 gi|257389215|ref|YP_003178988.1| - 0.038 13.8 0.5 0.12 12.2 0.0 2.0 3 0 0 3 3 3 0 Bacterial dnaA protein MMR_HSR1 PF01926.23 gi|257389215|ref|YP_003178988.1| - 0.04 14.0 0.1 0.17 12.0 0.0 2.0 2 0 0 2 2 2 0 50S ribosome-binding GTPase SMC_N PF02463.19 gi|257389215|ref|YP_003178988.1| - 0.043 13.2 0.1 0.89 9.0 0.0 2.5 2 1 1 3 3 3 0 RecF/RecN/SMC N terminal domain AAA_25 PF13481.6 gi|257389215|ref|YP_003178988.1| - 0.06 12.9 0.4 0.19 11.3 0.1 2.0 2 1 0 2 2 2 0 AAA domain RsgA_GTPase PF03193.16 gi|257389215|ref|YP_003178988.1| - 0.064 13.2 0.3 0.5 10.3 0.0 2.4 3 0 0 3 3 3 0 RsgA GTPase AAA_27 PF13514.6 gi|257389215|ref|YP_003178988.1| - 0.086 12.4 0.0 0.17 11.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain MukB PF04310.12 gi|257389215|ref|YP_003178988.1| - 0.1 12.4 0.0 0.21 11.4 0.0 1.4 1 0 0 1 1 1 0 MukB N-terminal Barwin PF00967.17 gi|257389215|ref|YP_003178988.1| - 0.18 11.7 0.5 0.71 9.7 0.1 2.0 2 0 0 2 2 2 0 Barwin family BPD_transp_2 PF02653.16 gi|257389216|ref|YP_003178989.1| - 7e-42 143.4 34.7 7e-42 143.4 34.7 2.0 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component BPD_transp_2 PF02653.16 gi|257389217|ref|YP_003178990.1| - 1.2e-37 129.6 37.2 1.2e-37 129.6 37.2 1.8 2 0 0 2 2 2 1 Branched-chain amino acid transport system / permease component NYN PF01936.18 gi|257389218|ref|YP_003178991.1| - 3.4e-36 124.9 0.1 4.2e-36 124.6 0.1 1.0 1 0 0 1 1 1 1 NYN domain CbbQ_C PF08406.10 gi|257389218|ref|YP_003178991.1| - 0.021 15.1 0.0 0.31 11.3 0.0 2.2 2 0 0 2 2 2 0 CbbQ/NirQ/NorQ C-terminal Clathrin PF00637.20 gi|257389218|ref|YP_003178991.1| - 0.026 14.4 0.0 0.046 13.6 0.0 1.3 1 0 0 1 1 1 0 Region in Clathrin and VPS LpxI_N PF17930.1 gi|257389218|ref|YP_003178991.1| - 0.031 14.2 0.0 0.07 13.0 0.0 1.6 2 0 0 2 2 2 0 LpxI N-terminal domain DpaA_N PF16924.5 gi|257389218|ref|YP_003178991.1| - 0.1 12.7 0.0 0.16 12.1 0.0 1.4 1 0 0 1 1 1 0 Dipicolinate synthase subunit A N-terminal domain DUF2474 PF10617.9 gi|257389220|ref|YP_003178993.1| - 0.026 14.4 1.5 0.045 13.6 1.5 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2474) TcdA_TcdB_pore PF12920.7 gi|257389220|ref|YP_003178993.1| - 3.8 5.6 3.9 4 5.6 3.9 1.0 1 0 0 1 1 1 0 TcdA/TcdB pore forming domain TGT_C2 PF14810.6 gi|257389221|ref|YP_003178994.1| - 1e-21 76.8 0.1 2.1e-21 75.8 0.1 1.5 1 0 0 1 1 1 1 Patch-forming domain C2 of tRNA-guanine transglycosylase PUA PF01472.20 gi|257389221|ref|YP_003178994.1| - 1.9e-15 56.6 0.1 2.5e-15 56.2 0.1 1.2 1 0 0 1 1 1 1 PUA domain UPF0113 PF03657.13 gi|257389221|ref|YP_003178994.1| - 0.034 14.4 0.0 0.048 13.9 0.0 1.3 1 0 0 1 1 1 0 UPF0113 PUA domain NAC PF01849.18 gi|257389222|ref|YP_003178995.1| - 2.4e-18 65.8 0.3 3.5e-18 65.3 0.3 1.3 1 0 0 1 1 1 1 NAC domain UBA_4 PF14555.6 gi|257389222|ref|YP_003178995.1| - 0.0056 16.5 0.1 0.013 15.3 0.1 1.6 1 0 0 1 1 1 1 UBA-like domain UBA PF00627.31 gi|257389222|ref|YP_003178995.1| - 0.009 15.9 0.9 0.009 15.9 0.9 2.2 3 0 0 3 3 3 1 UBA/TS-N domain CUE PF02845.16 gi|257389222|ref|YP_003178995.1| - 0.1 12.3 0.0 0.21 11.3 0.0 1.5 1 0 0 1 1 1 0 CUE domain GCD14 PF08704.10 gi|257389223|ref|YP_003178996.1| - 5.9e-17 62.2 0.0 1.7e-13 50.8 0.0 2.0 1 1 1 2 2 2 2 tRNA methyltransferase complex GCD14 subunit Methyltransf_31 PF13847.6 gi|257389223|ref|YP_003178996.1| - 7e-11 42.1 0.0 9.3e-11 41.7 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|257389223|ref|YP_003178996.1| - 1.3e-09 38.6 1.0 1.6e-09 38.3 0.3 1.5 2 0 0 2 2 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|257389223|ref|YP_003178996.1| - 7.5e-09 36.1 0.3 1.7e-08 35.0 0.3 1.7 1 1 0 1 1 1 1 Methyltransferase domain PrmA PF06325.13 gi|257389223|ref|YP_003178996.1| - 1.2e-07 31.4 0.1 1.6e-07 31.0 0.1 1.1 1 0 0 1 1 1 1 Ribosomal protein L11 methyltransferase (PrmA) Methyltransf_24 PF13578.6 gi|257389223|ref|YP_003178996.1| - 1.3e-07 32.5 0.2 2.7e-07 31.6 0.2 1.5 1 0 0 1 1 1 1 Methyltransferase domain PCMT PF01135.19 gi|257389223|ref|YP_003178996.1| - 4.3e-07 29.9 0.1 5.4e-07 29.6 0.1 1.2 1 0 0 1 1 1 1 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) MTS PF05175.14 gi|257389223|ref|YP_003178996.1| - 1.3e-06 28.1 0.1 3.8e-06 26.5 0.1 1.7 1 1 0 1 1 1 1 Methyltransferase small domain CMAS PF02353.20 gi|257389223|ref|YP_003178996.1| - 2.2e-05 23.9 0.0 2.8e-05 23.6 0.0 1.2 1 0 0 1 1 1 1 Mycolic acid cyclopropane synthetase Methyltransf_3 PF01596.17 gi|257389223|ref|YP_003178996.1| - 2.3e-05 23.7 0.0 3.2e-05 23.2 0.0 1.2 1 0 0 1 1 1 1 O-methyltransferase RrnaAD PF00398.20 gi|257389223|ref|YP_003178996.1| - 2.6e-05 23.4 0.0 3.8e-05 22.9 0.0 1.1 1 0 0 1 1 1 1 Ribosomal RNA adenine dimethylase Methyltransf_23 PF13489.6 gi|257389223|ref|YP_003178996.1| - 2.7e-05 24.1 0.0 5.3e-05 23.1 0.0 1.6 1 1 0 1 1 1 1 Methyltransferase domain Cons_hypoth95 PF03602.15 gi|257389223|ref|YP_003178996.1| - 9.1e-05 22.2 0.1 0.00021 21.0 0.0 1.4 1 1 0 1 1 1 1 Conserved hypothetical protein 95 Methyltransf_18 PF12847.7 gi|257389223|ref|YP_003178996.1| - 0.00028 20.8 0.0 0.00045 20.2 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_15 PF09445.10 gi|257389223|ref|YP_003178996.1| - 0.00061 19.4 0.0 0.00083 19.0 0.0 1.1 1 0 0 1 1 1 1 RNA cap guanine-N2 methyltransferase Methyltransf_12 PF08242.12 gi|257389223|ref|YP_003178996.1| - 0.00082 20.1 0.1 0.0022 18.7 0.1 1.7 1 1 0 1 1 1 1 Methyltransferase domain ADH_zinc_N PF00107.26 gi|257389223|ref|YP_003178996.1| - 0.00093 19.2 0.5 0.0016 18.4 0.5 1.3 1 0 0 1 1 1 1 Zinc-binding dehydrogenase SAM_MT PF04445.13 gi|257389223|ref|YP_003178996.1| - 0.0023 17.4 0.6 0.0039 16.6 0.6 1.3 1 0 0 1 1 1 1 Putative SAM-dependent methyltransferase Methyltr_RsmB-F PF01189.17 gi|257389223|ref|YP_003178996.1| - 0.0025 17.5 0.1 0.0039 16.9 0.1 1.2 1 0 0 1 1 1 1 16S rRNA methyltransferase RsmB/F MetW PF07021.12 gi|257389223|ref|YP_003178996.1| - 0.0033 17.0 0.2 0.012 15.2 0.1 1.8 2 0 0 2 2 2 1 Methionine biosynthesis protein MetW Met_10 PF02475.16 gi|257389223|ref|YP_003178996.1| - 0.0074 16.1 0.0 0.0093 15.7 0.0 1.1 1 0 0 1 1 1 1 Met-10+ like-protein 3HCDH_N PF02737.18 gi|257389223|ref|YP_003178996.1| - 0.019 14.9 0.5 0.03 14.2 0.5 1.3 1 0 0 1 1 1 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DUF938 PF06080.12 gi|257389223|ref|YP_003178996.1| - 0.03 14.1 0.0 0.95 9.2 0.0 2.2 1 1 0 1 1 1 0 Protein of unknown function (DUF938) ApbA PF02558.16 gi|257389223|ref|YP_003178996.1| - 0.058 13.0 0.0 0.093 12.4 0.0 1.2 1 0 0 1 1 1 0 Ketopantoate reductase PanE/ApbA Methyltransf_16 PF10294.9 gi|257389223|ref|YP_003178996.1| - 0.24 11.1 0.0 0.35 10.6 0.0 1.2 1 0 0 1 1 1 0 Lysine methyltransferase CPBP PF02517.16 gi|257389224|ref|YP_003178997.1| - 4.6e-13 49.3 5.0 4.6e-13 49.3 5.0 2.1 2 1 0 2 2 2 1 CPBP intramembrane metalloprotease DUF2423 PF10338.9 gi|257389225|ref|YP_003178998.1| - 0.32 11.3 1.2 0.53 10.5 1.2 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF2423) TFIIS_C PF01096.18 gi|257389226|ref|YP_003178999.1| - 1.7e-17 63.0 5.3 1.7e-17 63.0 5.3 3.3 3 1 0 3 3 3 1 Transcription factor S-II (TFIIS) RNA_POL_M_15KD PF02150.16 gi|257389226|ref|YP_003178999.1| - 8.3e-08 32.0 10.8 6.3e-07 29.2 0.3 3.3 3 0 0 3 3 3 1 RNA polymerases M/15 Kd subunit Zn_Tnp_IS1595 PF12760.7 gi|257389226|ref|YP_003178999.1| - 4.7e-05 23.3 4.9 0.0011 19.0 0.7 2.4 2 0 0 2 2 2 1 Transposase zinc-ribbon domain TF_Zn_Ribbon PF08271.12 gi|257389226|ref|YP_003178999.1| - 7.4e-05 22.2 9.9 0.0049 16.3 0.2 3.4 2 1 1 3 3 3 1 TFIIB zinc-binding zf-ribbon_3 PF13248.6 gi|257389226|ref|YP_003178999.1| - 0.00046 19.5 10.0 0.023 14.1 1.1 3.1 3 0 0 3 3 3 2 zinc-ribbon domain DZR PF12773.7 gi|257389226|ref|YP_003178999.1| - 0.00057 19.8 9.6 0.0083 16.1 0.4 2.8 2 1 0 2 2 2 1 Double zinc ribbon Prok-RING_1 PF14446.6 gi|257389226|ref|YP_003178999.1| - 0.0021 18.0 6.7 0.0042 17.0 0.3 2.9 3 0 0 3 3 3 1 Prokaryotic RING finger family 1 OrfB_Zn_ribbon PF07282.11 gi|257389226|ref|YP_003178999.1| - 0.0027 17.6 13.1 0.015 15.2 1.8 2.6 2 1 0 2 2 2 1 Putative transposase DNA-binding domain PhnA_Zn_Ribbon PF08274.12 gi|257389226|ref|YP_003178999.1| - 0.0053 16.7 6.8 0.48 10.4 0.2 3.5 3 1 0 3 3 3 1 PhnA Zinc-Ribbon DUF3268 PF11672.8 gi|257389226|ref|YP_003178999.1| - 0.014 15.8 3.6 0.052 13.9 0.2 2.3 2 1 0 2 2 2 0 zinc-finger-containing domain FYVE_2 PF02318.16 gi|257389226|ref|YP_003178999.1| - 0.017 15.3 4.8 0.23 11.7 0.4 2.2 1 1 0 2 2 2 0 FYVE-type zinc finger DUF3797 PF12677.7 gi|257389226|ref|YP_003178999.1| - 0.019 14.9 1.3 0.073 13.0 0.5 2.3 2 1 0 2 2 2 0 Domain of unknown function (DUF3797) zf_UBZ PF18439.1 gi|257389226|ref|YP_003178999.1| - 0.021 14.4 8.8 2.5 7.7 0.1 4.1 4 0 0 4 4 4 0 Ubiquitin-Binding Zinc Finger FdhE PF04216.12 gi|257389226|ref|YP_003178999.1| - 0.048 13.5 0.1 0.048 13.5 0.1 1.9 1 1 0 2 2 2 0 Protein involved in formate dehydrogenase formation DUF4428 PF14471.6 gi|257389226|ref|YP_003178999.1| - 0.073 13.0 0.5 0.073 13.0 0.5 2.3 3 1 0 3 3 2 0 Domain of unknown function (DUF4428) HypA PF01155.19 gi|257389226|ref|YP_003178999.1| - 0.081 13.0 9.6 0.59 10.2 0.8 2.9 1 1 1 2 2 2 0 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Nudix_N_2 PF14803.6 gi|257389226|ref|YP_003178999.1| - 0.16 12.0 11.5 7.9 6.5 3.7 3.7 3 1 0 3 3 3 0 Nudix N-terminal DUF2752 PF10825.8 gi|257389226|ref|YP_003178999.1| - 0.17 12.0 0.4 1.6 8.8 0.0 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2752) Zn-ribbon_8 PF09723.10 gi|257389226|ref|YP_003178999.1| - 0.22 11.7 12.6 1.6 8.9 0.2 3.7 3 1 0 3 3 3 0 Zinc ribbon domain TerY_C PF15616.6 gi|257389226|ref|YP_003178999.1| - 0.23 11.6 6.3 0.35 11.0 0.3 2.1 1 1 1 2 2 2 0 TerY-C metal binding domain zinc-ribbons_6 PF07191.12 gi|257389226|ref|YP_003178999.1| - 0.25 11.4 9.0 3.8 7.6 0.4 2.7 2 1 1 3 3 3 0 zinc-ribbons Zn_ribbon_SprT PF17283.2 gi|257389226|ref|YP_003178999.1| - 0.34 10.9 5.4 3.2 7.7 0.2 3.1 3 0 0 3 3 3 0 SprT-like zinc ribbon domain zf-RING_7 PF02591.15 gi|257389226|ref|YP_003178999.1| - 0.5 10.6 12.2 17 5.7 0.1 4.1 4 1 0 4 4 4 0 C4-type zinc ribbon domain A2L_zn_ribbon PF08792.10 gi|257389226|ref|YP_003178999.1| - 0.51 10.1 10.2 26 4.7 0.4 4.1 3 1 1 4 4 4 0 A2L zinc ribbon domain zf-RING_5 PF14634.6 gi|257389226|ref|YP_003178999.1| - 0.56 10.2 5.8 1.9 8.5 0.4 2.9 2 2 1 3 3 3 0 zinc-RING finger domain Ribosomal_L37ae PF01780.19 gi|257389226|ref|YP_003178999.1| - 0.72 10.0 9.2 0.54 10.4 1.2 2.8 1 1 0 2 2 2 0 Ribosomal L37ae protein family zinc_ribbon_4 PF13717.6 gi|257389226|ref|YP_003178999.1| - 2.4 8.2 11.0 2.3 8.2 4.5 3.4 3 1 0 3 3 3 0 zinc-ribbon domain zf-RRN7 PF11781.8 gi|257389226|ref|YP_003178999.1| - 2.7 7.8 14.5 16 5.3 0.3 3.9 3 1 0 3 3 3 0 Zinc-finger of RNA-polymerase I-specific TFIIB, Rrn7 zf-IS66 PF13005.7 gi|257389226|ref|YP_003178999.1| - 2.7 8.4 13.7 5.7 7.4 0.0 4.2 3 1 1 4 4 4 0 zinc-finger binding domain of transposase IS66 zinc_ribbon_2 PF13240.6 gi|257389226|ref|YP_003178999.1| - 3.7 7.4 14.6 4.3 7.2 0.3 4.0 3 1 0 4 4 4 0 zinc-ribbon domain Rubredoxin_2 PF18073.1 gi|257389226|ref|YP_003178999.1| - 4.1 7.2 15.5 12 5.7 1.2 3.9 3 1 1 4 4 4 0 Rubredoxin metal binding domain zf-piccolo PF05715.13 gi|257389226|ref|YP_003178999.1| - 4.2 7.6 9.0 5.6 7.2 0.8 2.8 2 1 0 2 2 2 0 Piccolo Zn-finger zf-ISL3 PF14690.6 gi|257389226|ref|YP_003178999.1| - 4.2 8.1 8.4 66 4.3 0.0 3.5 3 1 0 3 3 3 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 HalOD2 PF18547.1 gi|257389226|ref|YP_003178999.1| - 6.1 6.8 16.0 2.7 8.0 1.4 3.8 3 1 1 4 4 4 0 Halobacterial output domain 2 YhfH PF14149.6 gi|257389226|ref|YP_003178999.1| - 8.3 6.5 12.0 16 5.6 0.1 3.9 4 0 0 4 4 4 0 YhfH-like protein TackOD1 PF18551.1 gi|257389226|ref|YP_003178999.1| - 8.5 6.0 9.2 1.4 8.5 0.5 2.7 2 1 0 2 2 2 0 Thaumarchaeal output domain 1 zf-ACC PF17848.1 gi|257389226|ref|YP_003178999.1| - 9.1 6.5 16.1 3.8 7.7 0.3 4.2 4 0 0 4 4 4 0 Acetyl-coA carboxylase zinc finger domain TssN PF17555.2 gi|257389227|ref|YP_003179000.1| - 0.32 10.3 0.5 0.38 10.1 0.5 1.1 1 0 0 1 1 1 0 Type VI secretion system, TssN BRI3BP PF14965.6 gi|257389229|ref|YP_003179002.1| - 0.011 15.3 0.0 0.013 15.1 0.0 1.1 1 0 0 1 1 1 0 Negative regulator of p53/TP53 LapA_dom PF06305.11 gi|257389229|ref|YP_003179002.1| - 0.013 15.3 0.0 0.015 15.1 0.0 1.2 1 0 0 1 1 1 0 Lipopolysaccharide assembly protein A domain Mt_ATP-synt_B PF05405.14 gi|257389229|ref|YP_003179002.1| - 0.017 14.8 0.0 0.021 14.4 0.0 1.2 1 0 0 1 1 1 0 Mitochondrial ATP synthase B chain precursor (ATP-synt_B) WD40_alt PF14077.6 gi|257389229|ref|YP_003179002.1| - 0.085 12.7 0.2 0.13 12.2 0.2 1.2 1 0 0 1 1 1 0 Alternative WD40 repeat motif DUF2802 PF10975.8 gi|257389229|ref|YP_003179002.1| - 0.088 12.9 0.4 0.13 12.4 0.4 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2802) FtsL PF04999.13 gi|257389229|ref|YP_003179002.1| - 0.11 12.5 0.0 0.13 12.2 0.0 1.1 1 0 0 1 1 1 0 Cell division protein FtsL TRAP_alpha PF03896.16 gi|257389229|ref|YP_003179002.1| - 0.12 11.5 0.0 0.15 11.3 0.0 1.0 1 0 0 1 1 1 0 Translocon-associated protein (TRAP), alpha subunit Pox_A11 PF05061.13 gi|257389229|ref|YP_003179002.1| - 0.58 9.4 1.9 0.59 9.4 0.2 1.7 2 0 0 2 2 2 0 Poxvirus A11 Protein FeoB_associated PF12669.7 gi|257389229|ref|YP_003179002.1| - 0.75 10.3 4.0 10 6.6 4.0 2.1 1 1 0 1 1 1 0 FeoB-associated Cys-rich membrane protein MttA_Hcf106 PF02416.16 gi|257389229|ref|YP_003179002.1| - 3.2 7.1 4.4 28 4.1 4.4 2.1 1 1 0 1 1 1 0 mttA/Hcf106 family BRI3BP PF14965.6 gi|257389230|ref|YP_003179003.1| - 0.00023 20.7 0.3 0.00029 20.4 0.3 1.1 1 0 0 1 1 1 1 Negative regulator of p53/TP53 MbeD_MobD PF04899.12 gi|257389230|ref|YP_003179003.1| - 0.02 15.0 2.0 0.025 14.7 2.0 1.1 1 0 0 1 1 1 0 MbeD/MobD like DivIC PF04977.15 gi|257389230|ref|YP_003179003.1| - 0.031 14.1 3.0 0.048 13.4 3.0 1.3 1 1 0 1 1 1 0 Septum formation initiator Trimer_CC PF08954.11 gi|257389230|ref|YP_003179003.1| - 0.032 13.8 12.0 0.27 10.8 3.4 2.1 1 1 1 2 2 2 0 Trimerisation motif BLOC1_2 PF10046.9 gi|257389230|ref|YP_003179003.1| - 0.049 13.9 0.4 0.058 13.7 0.4 1.1 1 0 0 1 1 1 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF4381 PF14316.6 gi|257389230|ref|YP_003179003.1| - 0.052 13.8 0.0 0.053 13.8 0.0 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4381) OPA3 PF07047.12 gi|257389230|ref|YP_003179003.1| - 0.14 12.0 0.0 0.15 11.8 0.0 1.1 1 0 0 1 1 1 0 Optic atrophy 3 protein (OPA3) PspB PF06667.12 gi|257389230|ref|YP_003179003.1| - 0.28 11.3 4.7 0.53 10.4 4.7 1.6 1 1 0 1 1 1 0 Phage shock protein B XhlA PF10779.9 gi|257389230|ref|YP_003179003.1| - 0.3 11.3 1.4 0.55 10.5 1.4 1.4 1 0 0 1 1 1 0 Haemolysin XhlA Nre_N PF04894.12 gi|257389231|ref|YP_003179004.1| - 1.9e-98 329.6 0.0 2.3e-98 329.3 0.0 1.1 1 0 0 1 1 1 1 Archaeal Nre, N-terminal Nre_C PF04895.12 gi|257389231|ref|YP_003179004.1| - 8.2e-39 131.9 0.0 1.7e-38 130.9 0.0 1.6 1 0 0 1 1 1 1 Archaeal Nre, C-terminal DUF4401 PF14351.6 gi|257389232|ref|YP_003179005.1| - 0.0034 16.8 1.1 0.0046 16.3 1.1 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4401) DUF3180 PF11377.8 gi|257389232|ref|YP_003179005.1| - 0.14 12.3 6.1 0.033 14.3 2.8 1.6 2 0 0 2 2 2 0 Protein of unknown function (DUF3180) Ost5 PF05251.12 gi|257389232|ref|YP_003179005.1| - 0.19 12.0 4.9 1.1 9.5 0.0 2.9 3 0 0 3 3 3 0 Oligosaccharyltransferase subunit 5 PhaG_MnhG_YufB PF03334.14 gi|257389232|ref|YP_003179005.1| - 0.23 11.7 6.6 5 7.4 0.5 2.9 3 0 0 3 3 3 0 Na+/H+ antiporter subunit DUF3953 PF13129.6 gi|257389232|ref|YP_003179005.1| - 1.2 8.9 0.0 1.2 8.9 0.0 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF3953) FeoB_associated PF12669.7 gi|257389232|ref|YP_003179005.1| - 4.9 7.6 7.6 14 6.2 0.0 3.4 4 0 0 4 4 4 0 FeoB-associated Cys-rich membrane protein DUF3360 PF11840.8 gi|257389233|ref|YP_003179006.1| - 0.0052 15.6 0.5 0.0075 15.1 0.5 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF3360) bMG6 PF17962.1 gi|257389233|ref|YP_003179006.1| - 0.061 13.5 0.3 0.19 11.9 0.1 1.8 2 0 0 2 2 2 0 Bacterial macroglobulin domain 6 Rax2 PF12768.7 gi|257389233|ref|YP_003179006.1| - 1.1 8.6 2.5 1.8 7.9 2.5 1.3 1 0 0 1 1 1 0 Cortical protein marker for cell polarity UVR PF02151.19 gi|257389234|ref|YP_003179007.1| - 0.044 13.6 0.1 0.083 12.7 0.1 1.4 1 0 0 1 1 1 0 UvrB/uvrC motif CPBP PF02517.16 gi|257389235|ref|YP_003179008.1| - 2.3e-10 40.7 7.8 2.3e-10 40.7 7.8 2.2 2 0 0 2 2 2 1 CPBP intramembrane metalloprotease Lon_C PF05362.13 gi|257389236|ref|YP_003179009.1| - 4.4e-35 121.1 5.1 6.8e-35 120.5 5.1 1.3 1 0 0 1 1 1 1 Lon protease (S16) C-terminal proteolytic domain AAA_32 PF13654.6 gi|257389236|ref|YP_003179009.1| - 6.6e-30 104.4 0.0 5.4e-22 78.3 0.0 2.3 2 0 0 2 2 2 2 AAA domain Mg_chelatase PF01078.21 gi|257389236|ref|YP_003179009.1| - 3.7e-17 62.4 0.1 6e-11 42.1 0.0 2.4 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.26 gi|257389236|ref|YP_003179009.1| - 6.4e-16 58.5 0.1 6.7e-09 35.7 0.0 2.5 2 0 0 2 2 2 2 Sigma-54 interaction domain AAA_5 PF07728.14 gi|257389236|ref|YP_003179009.1| - 6.7e-10 39.1 0.0 0.001 19.1 0.0 2.5 2 0 0 2 2 2 2 AAA domain (dynein-related subfamily) ChlI PF13541.6 gi|257389236|ref|YP_003179009.1| - 4.5e-09 36.2 0.5 1e-08 35.0 0.5 1.6 1 0 0 1 1 1 1 Subunit ChlI of Mg-chelatase MCM PF00493.23 gi|257389236|ref|YP_003179009.1| - 4.9e-08 32.3 0.1 0.004 16.3 0.0 2.5 2 0 0 2 2 2 2 MCM P-loop domain AAA PF00004.29 gi|257389236|ref|YP_003179009.1| - 7.2e-07 29.7 0.0 0.042 14.3 0.0 2.7 3 0 0 3 3 2 2 ATPase family associated with various cellular activities (AAA) Sigma54_activ_2 PF14532.6 gi|257389236|ref|YP_003179009.1| - 2.1e-05 24.7 0.0 0.18 11.9 0.0 2.4 2 0 0 2 2 2 2 Sigma-54 interaction domain RuvB_N PF05496.12 gi|257389236|ref|YP_003179009.1| - 3e-05 23.8 0.1 0.018 14.8 0.0 2.4 2 0 0 2 2 2 1 Holliday junction DNA helicase RuvB P-loop domain AAA_7 PF12775.7 gi|257389236|ref|YP_003179009.1| - 6.5e-05 22.5 0.1 0.00018 21.1 0.0 1.7 2 0 0 2 2 2 1 P-loop containing dynein motor region TIP49 PF06068.13 gi|257389236|ref|YP_003179009.1| - 0.00021 20.7 2.1 0.026 13.7 0.1 2.7 3 0 0 3 3 3 1 TIP49 P-loop domain AAA_22 PF13401.6 gi|257389236|ref|YP_003179009.1| - 0.00024 21.4 0.0 0.0045 17.3 0.0 2.5 2 0 0 2 2 2 1 AAA domain AAA_3 PF07726.11 gi|257389236|ref|YP_003179009.1| - 0.00026 20.8 0.1 0.42 10.5 0.0 2.5 2 0 0 2 2 2 2 ATPase family associated with various cellular activities (AAA) AAA_19 PF13245.6 gi|257389236|ref|YP_003179009.1| - 0.0004 20.8 0.0 0.65 10.3 0.0 2.6 2 0 0 2 2 2 2 AAA domain AAA_30 PF13604.6 gi|257389236|ref|YP_003179009.1| - 0.00072 19.3 0.0 0.064 13.0 0.0 2.3 2 0 0 2 2 2 1 AAA domain AAA_PrkA PF08298.11 gi|257389236|ref|YP_003179009.1| - 0.0012 17.8 0.0 0.096 11.6 0.0 2.2 2 0 0 2 2 2 1 PrkA AAA domain MCM_lid PF17855.1 gi|257389236|ref|YP_003179009.1| - 0.0041 17.5 0.2 0.015 15.7 0.0 2.1 2 0 0 2 2 2 1 MCM AAA-lid domain T2SSE PF00437.20 gi|257389236|ref|YP_003179009.1| - 0.005 15.9 0.3 0.049 12.7 0.0 2.5 3 0 0 3 3 3 1 Type II/IV secretion system protein AAA_10 PF12846.7 gi|257389236|ref|YP_003179009.1| - 0.012 14.6 0.1 0.06 12.3 0.0 1.9 2 0 0 2 2 2 0 AAA-like domain DUF815 PF05673.13 gi|257389236|ref|YP_003179009.1| - 0.015 14.5 0.0 0.031 13.4 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF815) PhoH PF02562.16 gi|257389236|ref|YP_003179009.1| - 0.016 14.7 0.0 0.035 13.6 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein AAA_33 PF13671.6 gi|257389236|ref|YP_003179009.1| - 0.018 15.2 0.0 0.048 13.8 0.0 1.8 1 0 0 1 1 1 0 AAA domain ABC_tran PF00005.27 gi|257389236|ref|YP_003179009.1| - 0.019 15.5 0.0 0.06 13.9 0.0 1.9 2 0 0 2 2 1 0 ABC transporter IstB_IS21 PF01695.17 gi|257389236|ref|YP_003179009.1| - 0.03 14.0 0.0 0.071 12.8 0.0 1.5 1 0 0 1 1 1 0 IstB-like ATP binding protein FtsK_SpoIIIE PF01580.18 gi|257389236|ref|YP_003179009.1| - 0.032 13.6 0.1 0.32 10.3 0.0 2.2 2 0 0 2 2 2 0 FtsK/SpoIIIE family NACHT PF05729.12 gi|257389236|ref|YP_003179009.1| - 0.044 13.7 0.0 0.085 12.8 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_16 PF13191.6 gi|257389236|ref|YP_003179009.1| - 0.048 14.0 0.0 0.2 12.0 0.0 2.0 2 0 0 2 2 1 0 AAA ATPase domain AAA_18 PF13238.6 gi|257389236|ref|YP_003179009.1| - 0.11 13.0 0.1 0.57 10.7 0.0 2.3 2 1 0 2 2 2 0 AAA domain Parvo_NS1 PF01057.17 gi|257389236|ref|YP_003179009.1| - 0.13 11.3 0.0 0.22 10.6 0.0 1.2 1 0 0 1 1 1 0 Parvovirus non-structural protein NS1 CTP_transf_like PF01467.26 gi|257389237|ref|YP_003179010.1| - 5.8e-15 55.7 0.3 9.4e-15 55.1 0.0 1.4 2 0 0 2 2 2 1 Cytidylyltransferase-like SAM_adeno_trans PF01887.16 gi|257389238|ref|YP_003179011.1| - 5.9e-75 251.7 0.5 6.6e-75 251.6 0.5 1.0 1 0 0 1 1 1 1 S-adenosyl-l-methionine hydroxide adenosyltransferase DUF5059 PF16502.5 gi|257389239|ref|YP_003179012.1| - 7.7e-289 959.8 104.2 1.3e-288 959.0 97.0 2.1 2 0 0 2 2 2 2 Domain of unknown function (DUF5059) Copper-bind PF00127.20 gi|257389239|ref|YP_003179012.1| - 3.6e-16 59.4 0.2 8.2e-16 58.3 0.2 1.6 1 0 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.6 gi|257389239|ref|YP_003179012.1| - 0.073 13.2 0.1 1 9.5 0.1 2.5 1 1 0 1 1 1 0 Cupredoxin-like domain TENA_THI-4 PF03070.16 gi|257389239|ref|YP_003179012.1| - 2.1 8.1 5.8 0.83 9.4 0.2 2.9 4 0 0 4 4 4 0 TENA/THI-4/PQQC family Cpn60_TCP1 PF00118.24 gi|257389240|ref|YP_003179013.1| - 6.8e-143 476.8 16.2 7.7e-143 476.7 16.2 1.0 1 0 0 1 1 1 1 TCP-1/cpn60 chaperonin family Amidohydro_2 PF04909.14 gi|257389241|ref|YP_003179014.1| - 1.2e-11 45.0 2.6 1.5e-11 44.7 2.6 1.1 1 0 0 1 1 1 1 Amidohydrolase Glycos_transf_2 PF00535.26 gi|257389242|ref|YP_003179015.1| - 5.7e-14 52.3 0.1 8.8e-14 51.7 0.1 1.3 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.6 gi|257389242|ref|YP_003179015.1| - 6.1e-07 29.6 0.9 1.5e-06 28.3 0.9 1.6 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_2 PF10111.9 gi|257389242|ref|YP_003179015.1| - 0.17 11.3 0.0 0.36 10.3 0.0 1.5 2 0 0 2 2 2 0 Glycosyltransferase like family 2 Methyltransf_25 PF13649.6 gi|257389243|ref|YP_003179016.1| - 9.2e-23 80.8 0.0 1.4e-22 80.2 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_11 PF08241.12 gi|257389243|ref|YP_003179016.1| - 2.9e-22 79.1 0.0 5.4e-22 78.3 0.0 1.4 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|257389243|ref|YP_003179016.1| - 2.4e-16 59.9 0.0 3.3e-16 59.4 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|257389243|ref|YP_003179016.1| - 2.1e-14 53.4 0.0 2.7e-14 53.1 0.0 1.1 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|257389243|ref|YP_003179016.1| - 4e-14 52.8 0.0 5.2e-14 52.4 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_12 PF08242.12 gi|257389243|ref|YP_003179016.1| - 1.3e-12 48.3 0.0 2e-12 47.7 0.0 1.3 1 0 0 1 1 1 1 Methyltransferase domain MetW PF07021.12 gi|257389243|ref|YP_003179016.1| - 4.7e-05 23.1 0.0 7.2e-05 22.5 0.0 1.3 1 0 0 1 1 1 1 Methionine biosynthesis protein MetW UPF0020 PF01170.18 gi|257389243|ref|YP_003179016.1| - 5e-05 23.1 0.0 0.00012 21.9 0.0 1.5 1 1 0 1 1 1 1 Putative RNA methylase family UPF0020 Methyltransf_9 PF08003.11 gi|257389243|ref|YP_003179016.1| - 0.00023 20.2 0.0 0.00034 19.6 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1698) MTS PF05175.14 gi|257389243|ref|YP_003179016.1| - 0.0023 17.5 0.0 0.0032 17.0 0.0 1.1 1 0 0 1 1 1 1 Methyltransferase small domain NodS PF05401.11 gi|257389243|ref|YP_003179016.1| - 0.0029 17.3 0.0 0.0038 16.9 0.0 1.1 1 0 0 1 1 1 1 Nodulation protein S (NodS) Methyltransf_20 PF12147.8 gi|257389243|ref|YP_003179016.1| - 0.017 14.2 0.0 0.031 13.4 0.0 1.4 1 0 0 1 1 1 0 Putative methyltransferase RrnaAD PF00398.20 gi|257389243|ref|YP_003179016.1| - 0.027 13.6 0.0 0.033 13.2 0.0 1.1 1 0 0 1 1 1 0 Ribosomal RNA adenine dimethylase Methyltransf_15 PF09445.10 gi|257389243|ref|YP_003179016.1| - 0.031 13.9 0.0 0.04 13.5 0.0 1.2 1 0 0 1 1 1 0 RNA cap guanine-N2 methyltransferase Methyltransf_4 PF02390.17 gi|257389243|ref|YP_003179016.1| - 0.034 13.6 0.0 0.049 13.1 0.0 1.2 1 0 0 1 1 1 0 Putative methyltransferase FtsJ PF01728.19 gi|257389243|ref|YP_003179016.1| - 0.039 14.0 0.0 0.049 13.7 0.0 1.2 1 0 0 1 1 1 0 FtsJ-like methyltransferase TPMT PF05724.11 gi|257389243|ref|YP_003179016.1| - 0.076 12.7 0.0 0.11 12.1 0.0 1.2 1 0 0 1 1 1 0 Thiopurine S-methyltransferase (TPMT) Methyltransf_29 PF03141.16 gi|257389243|ref|YP_003179016.1| - 0.22 10.0 0.0 0.28 9.7 0.0 1.1 1 0 0 1 1 1 0 Putative S-adenosyl-L-methionine-dependent methyltransferase TehB PF03848.14 gi|257389243|ref|YP_003179016.1| - 0.24 10.8 0.0 0.29 10.5 0.0 1.2 1 0 0 1 1 1 0 Tellurite resistance protein TehB HTH_24 PF13412.6 gi|257389244|ref|YP_003179017.1| - 9.3e-06 25.1 0.0 1.4e-05 24.5 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding MarR_2 PF12802.7 gi|257389244|ref|YP_003179017.1| - 9.6e-05 22.2 0.1 0.00016 21.5 0.1 1.4 1 1 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|257389244|ref|YP_003179017.1| - 0.0022 18.0 0.5 0.0061 16.6 0.3 1.7 1 1 1 2 2 2 1 Helix-turn-helix domain MarR PF01047.22 gi|257389244|ref|YP_003179017.1| - 0.0028 17.6 0.0 0.0043 17.0 0.0 1.3 1 0 0 1 1 1 1 MarR family GntR PF00392.21 gi|257389244|ref|YP_003179017.1| - 0.004 16.8 0.1 0.0057 16.3 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family TrmB PF01978.19 gi|257389244|ref|YP_003179017.1| - 0.025 14.5 0.0 0.034 14.0 0.0 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_12 PF08461.10 gi|257389244|ref|YP_003179017.1| - 0.03 14.3 0.1 0.17 11.8 0.1 2.1 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_36 PF13730.6 gi|257389244|ref|YP_003179017.1| - 0.036 14.0 0.0 0.23 11.4 0.0 2.1 1 1 0 1 1 1 0 Helix-turn-helix domain HTH_IclR PF09339.10 gi|257389244|ref|YP_003179017.1| - 0.049 13.4 0.1 0.065 13.0 0.1 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain TFIIE_alpha PF02002.17 gi|257389244|ref|YP_003179017.1| - 0.056 13.3 0.0 0.062 13.2 0.0 1.2 1 0 0 1 1 1 0 TFIIE alpha subunit HTH_5 PF01022.20 gi|257389244|ref|YP_003179017.1| - 0.078 12.9 0.0 0.11 12.4 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family RP-C PF03428.13 gi|257389244|ref|YP_003179017.1| - 0.086 12.5 0.0 0.15 11.7 0.0 1.3 1 0 0 1 1 1 0 Replication protein C N-terminal domain Lactamase_B PF00753.27 gi|257389245|ref|YP_003179018.1| - 1.5e-12 48.0 5.9 2.4e-12 47.3 5.6 1.5 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily BLACT_WH PF17778.1 gi|257389245|ref|YP_003179018.1| - 3e-07 30.3 0.1 6.6e-07 29.2 0.1 1.6 1 0 0 1 1 1 1 Beta-lactamase associated winged helix domain Lactamase_B_2 PF12706.7 gi|257389245|ref|YP_003179018.1| - 7.8e-06 25.5 1.8 1.4e-05 24.7 1.8 1.4 1 0 0 1 1 1 1 Beta-lactamase superfamily domain Lactamase_B_3 PF13483.6 gi|257389245|ref|YP_003179018.1| - 0.11 12.4 0.1 0.16 11.9 0.1 1.3 1 0 0 1 1 1 0 Beta-lactamase superfamily domain CxxCxxCC PF03692.15 gi|257389246|ref|YP_003179019.1| - 9.6e-14 51.8 1.6 4.2e-13 49.8 1.0 2.2 1 1 1 2 2 2 1 Putative zinc- or iron-chelating domain PKcGMP_CC PF16808.5 gi|257389246|ref|YP_003179019.1| - 0.25 11.2 2.6 0.36 10.7 0.1 2.4 3 0 0 3 3 3 0 Coiled-coil N-terminus of cGMP-dependent protein kinase TRAM PF01938.20 gi|257389247|ref|YP_003179020.1| - 1.8e-13 50.3 2.9 1.8e-13 50.3 2.9 1.8 3 0 0 3 3 3 1 TRAM domain RNase_II_C_S1 PF18614.1 gi|257389247|ref|YP_003179020.1| - 0.042 13.8 2.0 1.1 9.3 0.2 2.9 2 1 0 2 2 2 0 RNase II-type exonuclease C-terminal S1 domain Bax1-I PF01027.20 gi|257389248|ref|YP_003179021.1| - 0.035 13.9 6.7 0.043 13.6 6.7 1.1 1 0 0 1 1 1 0 Inhibitor of apoptosis-promoting Bax1 Phosphonate-bd PF12974.7 gi|257389248|ref|YP_003179021.1| - 0.055 13.0 0.0 0.068 12.8 0.0 1.1 1 0 0 1 1 1 0 ABC transporter, phosphonate, periplasmic substrate-binding protein Trp_oprn_chp PF09534.10 gi|257389248|ref|YP_003179021.1| - 0.1 12.4 3.1 0.14 11.9 3.1 1.3 1 0 0 1 1 1 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) Peptidase_M48 PF01435.18 gi|257389249|ref|YP_003179022.1| - 9.1e-12 45.2 0.0 2.3e-11 43.8 0.0 1.5 1 1 0 1 1 1 1 Peptidase family M48 SprT-like PF10263.9 gi|257389249|ref|YP_003179022.1| - 0.22 11.4 0.0 0.32 10.9 0.0 1.2 1 0 0 1 1 1 0 SprT-like family MacB_PCD PF12704.7 gi|257389250|ref|YP_003179023.1| - 1.6e-21 77.6 8.9 1.6e-21 77.6 8.9 1.8 2 0 0 2 2 2 1 MacB-like periplasmic core domain FtsX PF02687.21 gi|257389250|ref|YP_003179023.1| - 2.8e-14 53.3 0.6 2.8e-14 53.3 0.6 3.5 3 1 0 3 3 3 1 FtsX-like permease family DUF4064 PF13273.6 gi|257389250|ref|YP_003179023.1| - 3.6 7.9 9.8 3.7 7.9 1.2 2.9 2 1 1 3 3 3 0 Protein of unknown function (DUF4064) ABC_tran PF00005.27 gi|257389251|ref|YP_003179024.1| - 1.7e-33 116.0 0.0 2.3e-33 115.6 0.0 1.1 1 0 0 1 1 1 1 ABC transporter SMC_N PF02463.19 gi|257389251|ref|YP_003179024.1| - 4.6e-05 23.0 0.0 0.15 11.5 0.0 2.1 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_21 PF13304.6 gi|257389251|ref|YP_003179024.1| - 6.3e-05 22.9 0.3 0.24 11.2 0.1 2.1 2 0 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|257389251|ref|YP_003179024.1| - 0.00031 20.4 0.2 0.00064 19.4 0.2 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_25 PF13481.6 gi|257389251|ref|YP_003179024.1| - 0.00048 19.8 0.5 0.0059 16.2 0.1 2.1 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|257389251|ref|YP_003179024.1| - 0.00061 20.2 0.8 0.002 18.6 0.8 1.8 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|257389251|ref|YP_003179024.1| - 0.0009 19.2 0.3 0.0016 18.4 0.3 1.3 1 0 0 1 1 1 1 RsgA GTPase AAA_30 PF13604.6 gi|257389251|ref|YP_003179024.1| - 0.0031 17.2 1.7 0.0089 15.8 1.5 1.9 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|257389251|ref|YP_003179024.1| - 0.014 15.6 0.3 0.035 14.4 0.3 1.8 1 1 0 1 1 1 0 AAA domain AAA_24 PF13479.6 gi|257389251|ref|YP_003179024.1| - 0.048 13.4 0.8 1.5 8.5 0.3 2.1 2 0 0 2 2 2 0 AAA domain NTPase_1 PF03266.15 gi|257389251|ref|YP_003179024.1| - 0.083 12.8 0.5 2.2 8.2 0.2 2.2 2 0 0 2 2 2 0 NTPase DUF2092 PF09865.9 gi|257389252|ref|YP_003179025.1| - 9.4e-06 25.1 1.0 2.9e-05 23.5 0.3 2.2 2 1 0 2 2 2 1 Predicted periplasmic protein (DUF2092) LolA_like PF17131.4 gi|257389252|ref|YP_003179025.1| - 0.04 13.7 0.2 0.36 10.6 0.0 2.2 1 1 1 2 2 2 0 Outer membrane lipoprotein-sorting protein DUF3509 PF12021.8 gi|257389252|ref|YP_003179025.1| - 0.099 12.4 0.1 0.5 10.1 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF3509) Big_6 PF17936.1 gi|257389252|ref|YP_003179025.1| - 0.15 12.4 0.3 0.15 12.4 0.3 4.1 3 3 1 4 4 4 0 Bacterial Ig domain DUF5368 PF17336.2 gi|257389253|ref|YP_003179026.1| - 0.036 14.2 2.4 0.04 14.1 2.4 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5368) DUF2633 PF11119.8 gi|257389253|ref|YP_003179026.1| - 0.082 12.8 0.7 0.082 12.8 0.7 1.5 2 0 0 2 2 2 0 Protein of unknown function (DUF2633) Pox_P21 PF05313.12 gi|257389253|ref|YP_003179026.1| - 0.1 12.2 2.5 0.1 12.1 2.5 1.0 1 0 0 1 1 1 0 Poxvirus P21 membrane protein APOBEC4_like PF18774.1 gi|257389254|ref|YP_003179027.1| - 0.09 12.7 0.0 0.097 12.6 0.0 1.1 1 0 0 1 1 1 0 APOBEC4-like -AID/APOBEC-deaminase HEPN_Apea PF18739.1 gi|257389255|ref|YP_003179028.1| - 0.00079 19.8 0.2 0.0017 18.8 0.2 1.6 1 1 0 1 1 1 1 Apea-like HEPN HEPN_RiboL-PSP PF18735.1 gi|257389255|ref|YP_003179028.1| - 0.017 15.0 0.5 0.053 13.4 0.5 1.8 1 1 0 1 1 1 0 RiboL-PSP-HEPN GHMP_kinases_N PF00288.26 gi|257389256|ref|YP_003179029.1| - 4.2e-07 30.1 3.2 9.7e-07 28.9 3.2 1.6 1 0 0 1 1 1 1 GHMP kinases N terminal domain CMD PF02627.20 gi|257389256|ref|YP_003179029.1| - 0.96 9.5 4.5 16 5.6 0.1 2.8 3 0 0 3 3 3 0 Carboxymuconolactone decarboxylase family Sugar_tr PF00083.24 gi|257389257|ref|YP_003179030.1| - 9.7e-121 403.8 24.5 1.1e-120 403.6 24.5 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|257389257|ref|YP_003179030.1| - 1.3e-40 139.4 50.9 1.9e-34 119.1 27.3 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily TRI12 PF06609.13 gi|257389257|ref|YP_003179030.1| - 7.3e-07 28.0 3.4 7.3e-07 28.0 3.4 2.1 2 0 0 2 2 2 1 Fungal trichothecene efflux pump (TRI12) SseC PF04888.12 gi|257389257|ref|YP_003179030.1| - 3.5 7.1 6.2 0.45 10.1 0.6 2.2 2 0 0 2 2 2 0 Secretion system effector C (SseC) like family PPS_PS PF02006.16 gi|257389258|ref|YP_003179031.1| - 4.5e-72 241.3 1.1 5.4e-72 241.0 1.1 1.1 1 0 0 1 1 1 1 Phosphopantothenate/pantothenate synthetase Phage_GPD PF05954.11 gi|257389258|ref|YP_003179031.1| - 0.0048 16.2 1.1 0.0073 15.6 0.2 1.7 2 0 0 2 2 2 1 Phage late control gene D protein (GPD) MCM_N PF14551.6 gi|257389258|ref|YP_003179031.1| - 0.0089 16.6 0.0 0.016 15.8 0.0 1.4 1 0 0 1 1 1 1 MCM N-terminal domain DUF2064 PF09837.9 gi|257389258|ref|YP_003179031.1| - 6 6.7 6.6 0.93 9.3 1.7 2.1 2 1 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2064) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halomicrobium_mukohataei_DSM_12286_uid59107/NC_013202-NC_013201.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halomicrobium_mukohataei_DSM_12286_uid59107/NC_013202-NC_013201.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halomicrobium_mukohataei_DSM_12286_uid59107/NC_013202-NC_013201.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halomicrobium_mukohataei_DSM_12286_uid59107/NC_013202-NC_013201.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 12:57:16 2019 # [ok]