# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- SBP_bac_8 PF13416.6 gi|257372909|ref|YP_003175683.1| - 7.8e-31 107.9 1.2 1e-30 107.5 1.2 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.25 gi|257372909|ref|YP_003175683.1| - 9.7e-28 98.0 0.7 1.4e-27 97.5 0.7 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein Secretin_N_2 PF07655.13 gi|257372909|ref|YP_003175683.1| - 0.017 15.6 1.0 0.04 14.5 1.0 1.6 1 0 0 1 1 1 0 Secretin N-terminal domain BPD_transp_1 PF00528.22 gi|257372910|ref|YP_003175684.1| - 1.8e-14 53.9 21.6 1.8e-14 53.9 21.6 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component Myc-LZ PF02344.15 gi|257372910|ref|YP_003175684.1| - 0.24 11.6 0.3 0.38 10.9 0.3 1.3 1 0 0 1 1 1 0 Myc leucine zipper domain BPD_transp_1 PF00528.22 gi|257372911|ref|YP_003175685.1| - 3.4e-19 69.3 15.1 3.4e-19 69.3 15.1 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|257372912|ref|YP_003175686.1| - 7e-31 107.6 0.0 1.2e-30 106.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|257372912|ref|YP_003175686.1| - 1.9e-08 34.5 0.0 0.0058 16.5 0.0 2.2 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system OB_MalK PF17912.1 gi|257372912|ref|YP_003175686.1| - 3.8e-08 34.0 0.0 7.4e-07 29.9 0.0 3.0 2 0 0 2 2 2 1 MalK OB fold domain TOBE_2 PF08402.10 gi|257372912|ref|YP_003175686.1| - 3e-07 30.5 0.2 1.3e-06 28.5 0.1 2.2 2 0 0 2 2 2 1 TOBE domain CysA_C_terminal PF17850.1 gi|257372912|ref|YP_003175686.1| - 3.8e-05 24.2 0.0 0.00024 21.6 0.0 2.4 2 0 0 2 2 2 1 CysA C-terminal regulatory domain SMC_N PF02463.19 gi|257372912|ref|YP_003175686.1| - 0.00027 20.4 0.0 0.0012 18.3 0.0 1.9 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain RsgA_GTPase PF03193.16 gi|257372912|ref|YP_003175686.1| - 0.001 19.0 0.0 0.0024 17.8 0.0 1.6 2 0 0 2 2 1 1 RsgA GTPase Rad17 PF03215.15 gi|257372912|ref|YP_003175686.1| - 0.0043 17.0 0.0 0.0072 16.3 0.0 1.2 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_16 PF13191.6 gi|257372912|ref|YP_003175686.1| - 0.0047 17.3 0.0 0.006 17.0 0.0 1.4 1 1 0 1 1 1 1 AAA ATPase domain AAA_23 PF13476.6 gi|257372912|ref|YP_003175686.1| - 0.0076 16.8 0.0 0.015 15.8 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_22 PF13401.6 gi|257372912|ref|YP_003175686.1| - 0.0099 16.2 0.2 0.019 15.2 0.2 1.6 1 1 0 1 1 1 1 AAA domain TOBE PF03459.17 gi|257372912|ref|YP_003175686.1| - 0.013 15.8 0.1 0.049 13.9 0.1 2.1 1 0 0 1 1 1 0 TOBE domain AAA_15 PF13175.6 gi|257372912|ref|YP_003175686.1| - 0.018 14.8 0.0 0.13 12.0 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain AAA PF00004.29 gi|257372912|ref|YP_003175686.1| - 0.024 15.1 0.0 0.086 13.3 0.0 2.0 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_29 PF13555.6 gi|257372912|ref|YP_003175686.1| - 0.037 13.8 0.0 0.082 12.7 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain G-alpha PF00503.20 gi|257372912|ref|YP_003175686.1| - 0.079 12.1 0.0 0.11 11.6 0.0 1.1 1 0 0 1 1 1 0 G-protein alpha subunit AAA_30 PF13604.6 gi|257372912|ref|YP_003175686.1| - 0.1 12.3 0.0 0.2 11.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|257372912|ref|YP_003175686.1| - 0.15 12.5 0.0 1.5 9.2 0.0 2.3 2 0 0 2 2 2 0 RNA helicase AAA_33 PF13671.6 gi|257372912|ref|YP_003175686.1| - 0.18 11.9 0.2 0.29 11.3 0.2 1.6 1 1 0 1 1 1 0 AAA domain Glyco_hydro_2_C PF02836.17 gi|257372913|ref|YP_003175687.1| - 4.2e-109 364.3 0.0 5.4e-109 363.9 0.0 1.1 1 0 0 1 1 1 1 Glycosyl hydrolases family 2, TIM barrel domain Bgal_small_N PF02929.17 gi|257372913|ref|YP_003175687.1| - 1.7e-71 240.7 0.0 3e-71 239.9 0.0 1.4 1 0 0 1 1 1 1 Beta galactosidase small chain Glyco_hydro_2_N PF02837.18 gi|257372913|ref|YP_003175687.1| - 9.9e-52 175.3 0.2 2e-51 174.2 0.2 1.6 1 0 0 1 1 1 1 Glycosyl hydrolases family 2, sugar binding domain DUF4981 PF16353.5 gi|257372913|ref|YP_003175687.1| - 1e-26 93.2 0.0 1.9e-25 89.1 0.0 3.2 3 1 1 4 4 4 1 Domain of unknown function(DUF4981) Glyco_hydro_2 PF00703.21 gi|257372913|ref|YP_003175687.1| - 7e-18 65.3 0.1 1.6e-17 64.1 0.1 1.7 1 0 0 1 1 1 1 Glycosyl hydrolases family 2 DUF2888 PF11135.8 gi|257372913|ref|YP_003175687.1| - 0.15 12.0 0.1 0.34 10.9 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF2888) Lyase_8_N PF08124.11 gi|257372914|ref|YP_003175688.1| - 2.2e-90 302.8 0.0 3.9e-90 302.1 0.0 1.4 1 0 0 1 1 1 1 Polysaccharide lyase family 8, N terminal alpha-helical domain Lyase_8 PF02278.18 gi|257372914|ref|YP_003175688.1| - 1.5e-86 290.1 0.5 2.6e-86 289.3 0.5 1.5 1 0 0 1 1 1 1 Polysaccharide lyase family 8, super-sandwich domain Lyase_8_C PF02884.17 gi|257372914|ref|YP_003175688.1| - 2.3e-20 72.8 0.3 5.1e-20 71.7 0.3 1.6 1 0 0 1 1 1 1 Polysaccharide lyase family 8, C-terminal beta-sandwich domain LRRC37 PF15779.5 gi|257372914|ref|YP_003175688.1| - 0.055 13.8 0.0 0.14 12.5 0.0 1.6 1 0 0 1 1 1 0 Leucine-rich repeat-containing protein 37 family TAT_signal PF10518.9 gi|257372914|ref|YP_003175688.1| - 0.18 11.7 0.1 0.43 10.5 0.1 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence UPF0051 PF01458.17 gi|257372917|ref|YP_003175691.1| - 2e-69 233.6 0.3 2.7e-69 233.2 0.3 1.2 1 0 0 1 1 1 1 Uncharacterized protein family (UPF0051) HTH_10 PF04967.12 gi|257372918|ref|YP_003175692.1| - 2.7e-15 55.9 0.1 5.2e-15 55.0 0.1 1.5 1 0 0 1 1 1 1 HTH DNA binding domain HTH_30 PF13556.6 gi|257372918|ref|YP_003175692.1| - 0.00015 21.5 0.1 0.00043 20.0 0.1 1.8 1 0 0 1 1 1 1 PucR C-terminal helix-turn-helix domain MarR_2 PF12802.7 gi|257372918|ref|YP_003175692.1| - 0.00041 20.2 0.1 0.0014 18.4 0.1 2.0 2 0 0 2 2 2 1 MarR family HTH_psq PF05225.16 gi|257372918|ref|YP_003175692.1| - 0.021 14.5 1.8 0.03 14.1 0.2 2.1 2 1 0 2 2 2 0 helix-turn-helix, Psq domain HTH_8 PF02954.19 gi|257372918|ref|YP_003175692.1| - 0.025 14.4 0.0 0.059 13.2 0.0 1.6 1 0 0 1 1 1 0 Bacterial regulatory protein, Fis family HTH_20 PF12840.7 gi|257372918|ref|YP_003175692.1| - 0.04 14.0 0.1 0.13 12.3 0.1 1.9 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.6 gi|257372918|ref|YP_003175692.1| - 0.084 12.4 0.0 0.15 11.6 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding E1-E2_ATPase PF00122.20 gi|257372919|ref|YP_003175693.1| - 8.9e-55 185.0 0.5 2.3e-54 183.6 0.5 1.8 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.26 gi|257372919|ref|YP_003175693.1| - 1.1e-40 140.2 7.1 1.1e-40 140.2 7.1 1.9 2 1 0 2 2 2 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|257372919|ref|YP_003175693.1| - 2.2e-11 44.0 0.3 2.9e-10 40.4 0.0 2.7 2 0 0 2 2 2 1 Heavy-metal-associated domain HAD PF12710.7 gi|257372919|ref|YP_003175693.1| - 0.00099 19.6 0.4 0.0045 17.4 0.4 2.2 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.12 gi|257372919|ref|YP_003175693.1| - 0.0023 17.7 1.2 0.0078 16.0 1.1 1.8 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase Sod_Fe_N PF00081.22 gi|257372920|ref|YP_003175694.1| - 1.2e-31 109.0 1.1 2.1e-31 108.2 1.1 1.4 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, alpha-hairpin domain Sod_Fe_C PF02777.18 gi|257372920|ref|YP_003175694.1| - 9.8e-28 96.3 0.0 1.6e-27 95.6 0.0 1.4 1 0 0 1 1 1 1 Iron/manganese superoxide dismutases, C-terminal domain Calycin_like PF13944.6 gi|257372921|ref|YP_003175695.1| - 0.23 11.8 7.6 0.46 10.8 2.8 2.4 2 0 0 2 2 2 0 Calycin-like beta-barrel domain MarR_2 PF12802.7 gi|257372923|ref|YP_003175697.1| - 2.4e-09 36.9 0.8 7.6e-09 35.3 0.3 2.2 2 0 0 2 2 2 1 MarR family MarR PF01047.22 gi|257372923|ref|YP_003175697.1| - 3e-07 30.3 0.0 6.7e-07 29.1 0.0 1.5 1 0 0 1 1 1 1 MarR family GntR PF00392.21 gi|257372923|ref|YP_003175697.1| - 7.2e-07 28.8 0.3 1.7e-06 27.6 0.3 1.6 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_24 PF13412.6 gi|257372923|ref|YP_003175697.1| - 1.3e-06 27.8 0.1 3.2e-06 26.6 0.0 1.7 1 1 1 2 2 2 1 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|257372923|ref|YP_003175697.1| - 1.4e-06 28.1 0.2 2.7e-06 27.2 0.2 1.5 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_IclR PF09339.10 gi|257372923|ref|YP_003175697.1| - 1.4e-05 24.8 0.2 4.9e-05 23.0 0.0 1.9 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|257372923|ref|YP_003175697.1| - 9.2e-05 22.4 0.4 0.00028 20.9 0.4 1.8 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.6 gi|257372923|ref|YP_003175697.1| - 0.00013 22.4 0.1 0.00028 21.3 0.1 1.7 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_DeoR PF08220.12 gi|257372923|ref|YP_003175697.1| - 0.00027 20.6 0.1 0.00051 19.7 0.1 1.4 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|257372923|ref|YP_003175697.1| - 0.00072 19.5 0.2 0.0014 18.6 0.2 1.5 1 1 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_11 PF08279.12 gi|257372923|ref|YP_003175697.1| - 0.0017 18.3 0.1 0.0044 16.9 0.1 1.7 1 1 1 2 2 2 1 HTH domain TBPIP PF07106.13 gi|257372923|ref|YP_003175697.1| - 0.0057 16.6 0.0 0.013 15.4 0.0 1.6 2 0 0 2 2 2 1 TBPIP/Hop2 winged helix domain HTH_5 PF01022.20 gi|257372923|ref|YP_003175697.1| - 0.0057 16.5 0.0 0.01 15.7 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_23 PF13384.6 gi|257372923|ref|YP_003175697.1| - 0.0067 16.2 0.1 0.067 13.0 0.0 2.3 1 1 1 2 2 2 1 Homeodomain-like domain HTH_36 PF13730.6 gi|257372923|ref|YP_003175697.1| - 0.009 16.0 0.0 0.018 15.0 0.0 1.5 1 1 0 1 1 1 1 Helix-turn-helix domain Trp_repressor PF01371.19 gi|257372923|ref|YP_003175697.1| - 0.013 15.7 0.1 0.021 14.9 0.1 1.3 1 0 0 1 1 1 0 Trp repressor protein HTH_29 PF13551.6 gi|257372923|ref|YP_003175697.1| - 0.016 15.2 0.0 0.037 14.1 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn helix LacI PF00356.21 gi|257372923|ref|YP_003175697.1| - 0.016 14.9 0.0 0.04 13.7 0.0 1.7 1 0 0 1 1 1 0 Bacterial regulatory proteins, lacI family Fe_dep_repress PF01325.19 gi|257372923|ref|YP_003175697.1| - 0.019 15.2 0.6 0.028 14.6 0.0 1.6 2 0 0 2 2 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_28 PF13518.6 gi|257372923|ref|YP_003175697.1| - 0.025 14.7 0.1 0.066 13.3 0.0 1.8 1 1 0 1 1 1 0 Helix-turn-helix domain Rrf2 PF02082.20 gi|257372923|ref|YP_003175697.1| - 0.036 14.4 0.1 0.094 13.1 0.0 1.7 2 1 0 2 2 1 0 Transcriptional regulator Phage_rep_O PF04492.13 gi|257372923|ref|YP_003175697.1| - 0.1 13.2 0.0 0.15 12.6 0.0 1.3 1 0 0 1 1 1 0 Bacteriophage replication protein O RepL PF05732.11 gi|257372923|ref|YP_003175697.1| - 0.15 11.5 0.0 0.22 10.9 0.0 1.2 1 0 0 1 1 1 0 Firmicute plasmid replication protein (RepL) HSP33 PF01430.19 gi|257372923|ref|YP_003175697.1| - 0.22 10.9 0.3 17 4.8 0.2 2.0 2 0 0 2 2 2 0 Hsp33 protein PALP PF00291.25 gi|257372924|ref|YP_003175698.1| - 2e-72 244.1 2.1 2.2e-72 243.9 2.1 1.0 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme HSP70 PF00012.20 gi|257372925|ref|YP_003175699.1| - 2.1e-156 521.6 7.3 7.3e-117 391.0 1.7 3.1 2 1 1 3 3 3 3 Hsp70 protein Pkinase PF00069.25 gi|257372925|ref|YP_003175699.1| - 4.7e-24 85.2 0.0 7.8e-24 84.5 0.0 1.3 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|257372925|ref|YP_003175699.1| - 3.5e-11 42.9 0.0 5.7e-11 42.2 0.0 1.3 1 0 0 1 1 1 1 Protein tyrosine kinase GrpE PF01025.19 gi|257372925|ref|YP_003175699.1| - 2.4e-10 40.4 0.0 5.1e-10 39.3 0.0 1.5 1 0 0 1 1 1 1 GrpE MreB_Mbl PF06723.13 gi|257372925|ref|YP_003175699.1| - 1.6e-08 33.8 3.8 3.1e-08 32.8 3.8 1.4 1 0 0 1 1 1 1 MreB/Mbl protein IDEAL PF08858.10 gi|257372925|ref|YP_003175699.1| - 0.12 12.1 0.1 0.28 11.0 0.1 1.6 1 0 0 1 1 1 0 IDEAL domain FGGY_C PF02782.16 gi|257372925|ref|YP_003175699.1| - 0.13 12.0 0.2 1.2 8.9 0.0 2.4 3 0 0 3 3 3 0 FGGY family of carbohydrate kinases, C-terminal domain MazE_antitoxin PF04014.18 gi|257372929|ref|YP_003175703.1| - 0.00065 19.6 0.1 0.001 18.9 0.1 1.3 1 0 0 1 1 1 1 Antidote-toxin recognition MazE, bacterial antitoxin PrlF_antitoxin PF15937.5 gi|257372929|ref|YP_003175703.1| - 0.0043 17.5 0.0 0.0053 17.2 0.0 1.2 1 0 0 1 1 1 1 prlF antitoxin for toxin YhaV_toxin PIN PF01850.21 gi|257372930|ref|YP_003175704.1| - 1.6e-16 60.9 0.2 1.8e-16 60.8 0.2 1.0 1 0 0 1 1 1 1 PIN domain bMG6 PF17962.1 gi|257372932|ref|YP_003175706.1| - 0.022 14.9 0.3 0.025 14.7 0.3 1.1 1 0 0 1 1 1 0 Bacterial macroglobulin domain 6 AAA PF00004.29 gi|257372933|ref|YP_003175707.1| - 5.7e-14 52.7 0.0 1.5e-13 51.3 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.6 gi|257372933|ref|YP_003175707.1| - 2e-13 51.0 0.2 1e-12 48.8 0.0 2.3 2 1 0 2 2 2 1 AAA ATPase domain Cdc6_C PF09079.11 gi|257372933|ref|YP_003175707.1| - 1.5e-09 37.7 1.1 3.1e-09 36.7 0.1 2.1 3 0 0 3 3 3 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|257372933|ref|YP_003175707.1| - 6.2e-08 33.0 0.0 1.5e-07 31.8 0.0 1.6 1 0 0 1 1 1 1 AAA domain DUF815 PF05673.13 gi|257372933|ref|YP_003175707.1| - 3.2e-07 29.8 0.0 6.8e-07 28.7 0.0 1.5 1 0 0 1 1 1 1 Protein of unknown function (DUF815) TniB PF05621.11 gi|257372933|ref|YP_003175707.1| - 1.8e-06 27.5 0.0 5.3e-06 26.0 0.0 1.7 2 0 0 2 2 2 1 Bacterial TniB protein ATPase_2 PF01637.18 gi|257372933|ref|YP_003175707.1| - 3.1e-05 24.0 0.0 6.1e-05 23.0 0.0 1.5 1 0 0 1 1 1 1 ATPase domain predominantly from Archaea Sigma54_activat PF00158.26 gi|257372933|ref|YP_003175707.1| - 0.002 17.9 0.0 0.0035 17.1 0.0 1.4 1 0 0 1 1 1 1 Sigma-54 interaction domain NACHT PF05729.12 gi|257372933|ref|YP_003175707.1| - 0.0032 17.4 0.1 0.0092 15.9 0.0 1.8 2 0 0 2 2 2 1 NACHT domain AAA_7 PF12775.7 gi|257372933|ref|YP_003175707.1| - 0.0032 17.0 0.0 0.019 14.5 0.0 2.2 3 0 0 3 3 3 1 P-loop containing dynein motor region IstB_IS21 PF01695.17 gi|257372933|ref|YP_003175707.1| - 0.0044 16.8 0.0 0.018 14.8 0.0 2.0 1 1 1 2 2 2 1 IstB-like ATP binding protein ABC_tran PF00005.27 gi|257372933|ref|YP_003175707.1| - 0.0058 17.2 0.1 0.02 15.4 0.0 2.0 1 1 1 2 2 2 1 ABC transporter AAA_23 PF13476.6 gi|257372933|ref|YP_003175707.1| - 0.0086 16.6 0.0 0.15 12.5 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_29 PF13555.6 gi|257372933|ref|YP_003175707.1| - 0.017 14.8 0.0 0.035 13.8 0.0 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain RNA_helicase PF00910.22 gi|257372933|ref|YP_003175707.1| - 0.02 15.3 0.0 0.056 13.8 0.0 1.8 1 0 0 1 1 1 0 RNA helicase AAA_24 PF13479.6 gi|257372933|ref|YP_003175707.1| - 0.021 14.6 0.0 0.053 13.2 0.0 1.7 2 0 0 2 2 2 0 AAA domain Mg_chelatase PF01078.21 gi|257372933|ref|YP_003175707.1| - 0.021 14.2 0.0 0.039 13.3 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI AAA_19 PF13245.6 gi|257372933|ref|YP_003175707.1| - 0.026 14.8 0.0 0.047 14.0 0.0 1.5 1 0 0 1 1 1 0 AAA domain RsgA_GTPase PF03193.16 gi|257372933|ref|YP_003175707.1| - 0.037 13.9 0.0 0.2 11.6 0.0 2.0 1 1 0 2 2 2 0 RsgA GTPase AAA_PrkA PF08298.11 gi|257372933|ref|YP_003175707.1| - 0.04 12.8 0.0 0.069 12.1 0.0 1.3 1 0 0 1 1 1 0 PrkA AAA domain MMR_HSR1 PF01926.23 gi|257372933|ref|YP_003175707.1| - 0.059 13.5 0.0 0.18 11.9 0.0 1.9 2 0 0 2 2 2 0 50S ribosome-binding GTPase AAA_5 PF07728.14 gi|257372933|ref|YP_003175707.1| - 0.089 12.8 0.6 0.38 10.7 0.1 2.4 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) Cnd1 PF12717.7 gi|257372934|ref|YP_003175708.1| - 7.8e-36 123.6 0.0 5.3e-05 23.3 0.0 7.5 1 1 6 7 7 7 7 non-SMC mitotic condensation complex subunit 1 Pkinase PF00069.25 gi|257372934|ref|YP_003175708.1| - 2.4e-31 109.0 0.0 3.9e-31 108.4 0.0 1.3 1 0 0 1 1 1 1 Protein kinase domain HEAT_EZ PF13513.6 gi|257372934|ref|YP_003175708.1| - 3e-22 78.7 0.3 0.062 13.8 0.0 10.2 5 4 6 11 11 11 5 HEAT-like repeat Pkinase_Tyr PF07714.17 gi|257372934|ref|YP_003175708.1| - 9.5e-22 77.5 0.0 1.4e-21 76.9 0.0 1.2 1 0 0 1 1 1 1 Protein tyrosine kinase HEAT_2 PF13646.6 gi|257372934|ref|YP_003175708.1| - 5.6e-15 55.5 16.1 0.0025 18.2 0.2 7.1 2 1 7 9 9 9 8 HEAT repeats Adaptin_N PF01602.20 gi|257372934|ref|YP_003175708.1| - 6.6e-13 48.1 0.0 0.0013 17.4 0.0 4.0 2 1 1 3 3 3 3 Adaptin N terminal region HEAT PF02985.22 gi|257372934|ref|YP_003175708.1| - 5.4e-12 44.9 0.3 46 4.7 0.0 11.4 13 0 0 13 13 13 0 HEAT repeat CLASP_N PF12348.8 gi|257372934|ref|YP_003175708.1| - 6.1e-07 29.2 0.3 2.9 7.4 0.0 5.7 3 2 2 6 6 6 1 CLASP N terminal DNA_alkylation PF08713.11 gi|257372934|ref|YP_003175708.1| - 2.2e-05 24.3 0.0 9.3 5.9 0.0 5.9 5 2 2 7 7 7 2 DNA alkylation repair enzyme DUF3535 PF12054.8 gi|257372934|ref|YP_003175708.1| - 0.00032 20.1 0.0 3 7.0 0.0 4.6 3 2 0 4 4 4 1 Domain of unknown function (DUF3535) HisKA_3 PF07730.13 gi|257372934|ref|YP_003175708.1| - 0.015 15.8 12.6 22 5.7 0.0 8.3 3 2 6 10 10 10 0 Histidine kinase DUF2384 PF09722.10 gi|257372934|ref|YP_003175708.1| - 0.063 13.3 3.0 66 3.7 0.0 6.0 6 0 0 6 6 6 0 Protein of unknown function (DUF2384) AMA-1 PF02430.15 gi|257372934|ref|YP_003175708.1| - 0.09 11.7 0.1 12 4.7 0.0 2.8 2 1 1 3 3 3 0 Apical membrane antigen 1 Kdo PF06293.14 gi|257372934|ref|YP_003175708.1| - 0.12 11.7 0.0 0.24 10.7 0.0 1.4 1 0 0 1 1 1 0 Lipopolysaccharide kinase (Kdo/WaaP) family Anticodon_1 PF08264.13 gi|257372934|ref|YP_003175708.1| - 0.46 10.4 3.9 47 3.9 0.0 5.2 7 1 1 8 8 7 0 Anticodon-binding domain of tRNA Transcrip_act PF04949.13 gi|257372934|ref|YP_003175708.1| - 0.52 10.2 2.4 6.8 6.6 0.2 2.9 1 1 1 2 2 2 0 Transcriptional activator Barstar PF01337.18 gi|257372934|ref|YP_003175708.1| - 4.9 7.3 13.7 1.7 8.7 1.3 4.7 3 1 1 5 5 5 0 Barstar (barnase inhibitor) PQQ_3 PF13570.6 gi|257372935|ref|YP_003175709.1| - 1.3e-39 133.7 46.2 1.6e-08 34.7 1.0 9.4 9 0 0 9 9 9 6 PQQ-like domain PQQ_2 PF13360.6 gi|257372935|ref|YP_003175709.1| - 2.1e-31 109.4 15.8 5.1e-18 65.5 10.9 3.5 1 1 0 2 2 2 2 PQQ-like domain PQQ PF01011.21 gi|257372935|ref|YP_003175709.1| - 1.7e-29 100.3 12.7 3.6e-09 36.1 0.2 6.7 7 0 0 7 7 7 5 PQQ enzyme repeat Pkinase PF00069.25 gi|257372935|ref|YP_003175709.1| - 3.6e-29 101.9 0.0 5.4e-29 101.4 0.0 1.1 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|257372935|ref|YP_003175709.1| - 2.9e-15 56.2 0.0 4.4e-15 55.7 0.0 1.1 1 0 0 1 1 1 1 Protein tyrosine kinase APH PF01636.23 gi|257372935|ref|YP_003175709.1| - 0.062 13.2 5.9 0.39 10.6 2.1 3.0 2 1 1 3 3 3 0 Phosphotransferase enzyme family DUF4730 PF15873.5 gi|257372935|ref|YP_003175709.1| - 0.15 12.3 0.0 0.34 11.2 0.0 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4730) AAA_5 PF07728.14 gi|257372936|ref|YP_003175710.1| - 7.6e-30 103.7 0.0 1.9e-29 102.4 0.0 1.7 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_3 PF07726.11 gi|257372936|ref|YP_003175710.1| - 1.2e-13 51.1 0.0 1.8e-13 50.5 0.0 1.3 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA PF00004.29 gi|257372936|ref|YP_003175710.1| - 9.5e-09 35.8 0.0 1.7e-08 34.9 0.0 1.4 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) MCM PF00493.23 gi|257372936|ref|YP_003175710.1| - 9e-06 24.9 0.0 1.6e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 MCM P-loop domain Mg_chelatase PF01078.21 gi|257372936|ref|YP_003175710.1| - 2.1e-05 24.0 0.0 0.15 11.4 0.0 2.2 1 1 0 2 2 2 2 Magnesium chelatase, subunit ChlI CbbQ_C PF08406.10 gi|257372936|ref|YP_003175710.1| - 4.6e-05 23.6 2.2 6.4e-05 23.1 0.2 2.1 2 0 0 2 2 2 1 CbbQ/NirQ/NorQ C-terminal Sigma54_activat PF00158.26 gi|257372936|ref|YP_003175710.1| - 6.6e-05 22.7 0.0 0.00017 21.3 0.0 1.7 1 1 0 1 1 1 1 Sigma-54 interaction domain AAA_30 PF13604.6 gi|257372936|ref|YP_003175710.1| - 9.6e-05 22.2 0.2 0.00026 20.7 0.1 1.7 2 0 0 2 2 2 1 AAA domain IstB_IS21 PF01695.17 gi|257372936|ref|YP_003175710.1| - 0.00045 20.0 0.0 0.0008 19.2 0.0 1.4 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_6 PF12774.7 gi|257372936|ref|YP_003175710.1| - 0.00059 18.9 0.0 0.0079 15.2 0.0 2.0 2 0 0 2 2 2 1 Hydrolytic ATP binding site of dynein motor region AAA_16 PF13191.6 gi|257372936|ref|YP_003175710.1| - 0.00098 19.5 0.7 0.039 14.3 0.7 2.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|257372936|ref|YP_003175710.1| - 0.0013 19.0 0.0 0.0025 18.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|257372936|ref|YP_003175710.1| - 0.003 17.7 0.0 0.0061 16.7 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.6 gi|257372936|ref|YP_003175710.1| - 0.063 13.3 0.0 0.12 12.4 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|257372936|ref|YP_003175710.1| - 0.063 12.8 0.1 0.47 10.0 0.1 2.1 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|257372936|ref|YP_003175710.1| - 0.11 12.9 0.0 0.21 12.0 0.0 1.4 1 0 0 1 1 1 0 RNA helicase AAA_18 PF13238.6 gi|257372936|ref|YP_003175710.1| - 0.13 12.8 0.0 0.32 11.6 0.0 1.8 2 0 0 2 2 1 0 AAA domain ABC_tran PF00005.27 gi|257372936|ref|YP_003175710.1| - 0.16 12.5 0.0 0.32 11.5 0.0 1.8 1 1 0 1 1 1 0 ABC transporter VWA_2 PF13519.6 gi|257372937|ref|YP_003175711.1| - 4.7e-06 27.2 0.0 1e-05 26.1 0.0 1.6 1 0 0 1 1 1 1 von Willebrand factor type A domain CobT_C PF11775.8 gi|257372937|ref|YP_003175711.1| - 0.0001 22.0 0.0 0.00027 20.7 0.0 1.7 1 0 0 1 1 1 1 Cobalamin biosynthesis protein CobT VWA domain VWA PF00092.28 gi|257372937|ref|YP_003175711.1| - 0.022 15.0 0.0 0.26 11.5 0.0 2.1 1 1 1 2 2 2 0 von Willebrand factor type A domain HEAT_2 PF13646.6 gi|257372938|ref|YP_003175712.1| - 7.4e-28 96.8 106.2 1.9e-06 28.2 1.2 15.3 9 5 5 15 15 15 10 HEAT repeats HEAT PF02985.22 gi|257372938|ref|YP_003175712.1| - 8.7e-18 62.9 51.2 0.001 19.1 0.0 15.3 16 0 0 16 16 16 7 HEAT repeat Cnd1 PF12717.7 gi|257372938|ref|YP_003175712.1| - 5.2e-16 59.1 0.0 0.0027 17.8 0.0 7.9 4 2 3 8 8 8 4 non-SMC mitotic condensation complex subunit 1 Cohesin_HEAT PF12765.7 gi|257372938|ref|YP_003175712.1| - 3.5e-14 52.8 9.7 2.6e-11 43.6 0.0 6.1 5 0 0 5 5 5 1 HEAT repeat associated with sister chromatid cohesion Adaptin_N PF01602.20 gi|257372938|ref|YP_003175712.1| - 5.3e-13 48.4 0.0 0.011 14.4 0.0 5.9 3 2 1 5 5 5 4 Adaptin N terminal region HEAT_EZ PF13513.6 gi|257372938|ref|YP_003175712.1| - 1.3e-09 38.4 75.0 6.8e-06 26.5 0.3 14.4 14 2 2 16 16 15 5 HEAT-like repeat Cnd3 PF12719.7 gi|257372938|ref|YP_003175712.1| - 0.0001 21.6 0.0 0.0005 19.3 0.0 2.2 2 0 0 2 2 2 1 Nuclear condensing complex subunits, C-term domain RTP1_C1 PF10363.9 gi|257372938|ref|YP_003175712.1| - 0.015 15.5 0.0 7.9 6.7 0.0 4.3 5 0 0 5 5 4 0 Required for nuclear transport of RNA pol II C-terminus 1 Nipped-B_C PF12830.7 gi|257372938|ref|YP_003175712.1| - 0.016 15.1 0.0 3.7 7.5 0.0 3.7 4 0 0 4 4 4 0 Sister chromatid cohesion C-terminus Arm PF00514.23 gi|257372938|ref|YP_003175712.1| - 0.35 11.0 14.6 8.2 6.6 0.0 7.4 10 0 0 10 10 10 0 Armadillo/beta-catenin-like repeat HEAT_PBS PF03130.16 gi|257372938|ref|YP_003175712.1| - 1.2 10.1 47.4 1.8 9.5 1.5 12.7 13 0 0 13 13 12 0 PBS lyase HEAT-like repeat PHO4 PF01384.20 gi|257372939|ref|YP_003175713.1| - 1e-41 143.1 18.5 1.9e-41 142.3 18.5 1.4 1 0 0 1 1 1 1 Phosphate transporter family Plant_vir_prot PF01307.17 gi|257372939|ref|YP_003175713.1| - 0.14 12.4 0.1 0.8 10.0 0.0 2.4 2 0 0 2 2 2 0 Plant viral movement protein Pkinase PF00069.25 gi|257372940|ref|YP_003175714.1| - 4.9e-24 85.1 0.0 1.2e-23 83.8 0.0 1.6 1 1 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|257372940|ref|YP_003175714.1| - 5e-16 58.8 0.0 9.1e-16 57.9 0.0 1.4 1 0 0 1 1 1 1 Protein tyrosine kinase Fer2 PF00111.27 gi|257372940|ref|YP_003175714.1| - 1.8e-11 43.8 1.5 4.5e-11 42.5 1.5 1.7 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain HrcA_DNA-bdg PF03444.15 gi|257372940|ref|YP_003175714.1| - 1.6e-07 30.8 0.0 0.0033 17.0 0.0 2.4 2 0 0 2 2 2 2 Winged helix-turn-helix transcription repressor, HrcA DNA-binding Rrf2 PF02082.20 gi|257372940|ref|YP_003175714.1| - 1.7e-06 28.3 0.0 0.022 15.1 0.0 2.4 2 0 0 2 2 2 2 Transcriptional regulator HTH_11 PF08279.12 gi|257372940|ref|YP_003175714.1| - 9.4e-05 22.3 0.1 0.14 12.1 0.0 2.8 3 0 0 3 3 3 2 HTH domain MarR_2 PF12802.7 gi|257372940|ref|YP_003175714.1| - 0.00014 21.7 1.4 0.52 10.2 0.2 2.8 2 0 0 2 2 2 2 MarR family HTH_20 PF12840.7 gi|257372940|ref|YP_003175714.1| - 0.00027 21.0 2.1 0.022 14.8 0.1 3.1 3 0 0 3 3 3 1 Helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|257372940|ref|YP_003175714.1| - 0.00032 20.6 0.0 0.5 10.4 0.0 2.4 2 0 0 2 2 2 2 Crp-like helix-turn-helix domain Put_DNA-bind_N PF06971.13 gi|257372940|ref|YP_003175714.1| - 0.0023 17.9 0.1 0.37 10.9 0.0 2.8 2 0 0 2 2 2 1 Putative DNA-binding protein N-terminus DinB_2 PF12867.7 gi|257372940|ref|YP_003175714.1| - 0.013 16.0 0.9 0.7 10.4 0.1 2.9 2 1 1 3 3 2 0 DinB superfamily HTH_24 PF13412.6 gi|257372940|ref|YP_003175714.1| - 0.017 14.7 0.0 1.2 8.8 0.0 2.4 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding TrmB PF01978.19 gi|257372940|ref|YP_003175714.1| - 0.024 14.5 0.0 0.54 10.2 0.0 2.5 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB Rio2_N PF09202.11 gi|257372940|ref|YP_003175714.1| - 0.13 12.5 0.0 2.8 8.2 0.0 2.7 3 0 0 3 3 3 0 Rio2, N-terminal FliX PF10768.9 gi|257372940|ref|YP_003175714.1| - 0.19 12.2 3.0 0.46 11.0 1.1 2.3 2 0 0 2 2 2 0 Class II flagellar assembly regulator phiKZ_IP PF12699.7 gi|257372941|ref|YP_003175715.1| - 0.057 12.6 0.1 0.062 12.4 0.1 1.2 1 0 0 1 1 1 0 phiKZ-like phage internal head proteins VPS28 PF03997.12 gi|257372941|ref|YP_003175715.1| - 0.083 12.5 0.0 0.13 11.9 0.0 1.2 1 0 0 1 1 1 0 VPS28 protein AAA PF00004.29 gi|257372942|ref|YP_003175716.1| - 2e-39 135.1 0.0 4.7e-39 133.8 0.0 1.7 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) RuvB_N PF05496.12 gi|257372942|ref|YP_003175716.1| - 2.1e-06 27.6 0.0 3.9e-06 26.7 0.0 1.4 1 0 0 1 1 1 1 Holliday junction DNA helicase RuvB P-loop domain AAA_5 PF07728.14 gi|257372942|ref|YP_003175716.1| - 1.3e-05 25.2 0.4 0.00053 20.0 0.4 2.6 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_16 PF13191.6 gi|257372942|ref|YP_003175716.1| - 0.00018 21.9 5.5 0.078 13.3 0.1 3.2 2 1 1 3 3 3 2 AAA ATPase domain AAA_22 PF13401.6 gi|257372942|ref|YP_003175716.1| - 0.00024 21.4 0.2 0.0016 18.7 0.2 2.3 1 1 0 1 1 1 1 AAA domain AAA_2 PF07724.14 gi|257372942|ref|YP_003175716.1| - 0.00084 19.5 0.0 0.0056 16.8 0.0 2.2 1 1 0 1 1 1 1 AAA domain (Cdc48 subfamily) Mg_chelatase PF01078.21 gi|257372942|ref|YP_003175716.1| - 0.0014 18.1 0.0 0.0028 17.1 0.0 1.4 1 0 0 1 1 1 1 Magnesium chelatase, subunit ChlI AAA_lid_3 PF17862.1 gi|257372942|ref|YP_003175716.1| - 0.0015 18.3 0.1 0.0037 17.0 0.1 1.7 1 0 0 1 1 1 1 AAA+ lid domain IstB_IS21 PF01695.17 gi|257372942|ref|YP_003175716.1| - 0.0025 17.6 0.0 0.0064 16.2 0.0 1.7 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_25 PF13481.6 gi|257372942|ref|YP_003175716.1| - 0.0079 15.8 3.4 0.037 13.6 0.3 2.5 2 1 0 3 3 2 1 AAA domain PhoH PF02562.16 gi|257372942|ref|YP_003175716.1| - 0.011 15.2 0.0 0.023 14.1 0.0 1.5 1 0 0 1 1 1 0 PhoH-like protein ABC_tran PF00005.27 gi|257372942|ref|YP_003175716.1| - 0.012 16.2 0.2 0.16 12.4 0.0 2.3 2 0 0 2 2 2 0 ABC transporter AAA_24 PF13479.6 gi|257372942|ref|YP_003175716.1| - 0.013 15.3 0.1 0.038 13.7 0.0 1.9 2 0 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|257372942|ref|YP_003175716.1| - 0.015 15.5 0.0 0.057 13.6 0.0 2.0 2 0 0 2 2 1 0 AAA domain Sigma54_activat PF00158.26 gi|257372942|ref|YP_003175716.1| - 0.015 15.0 0.0 0.38 10.5 0.0 2.2 1 1 0 1 1 1 0 Sigma-54 interaction domain AAA_18 PF13238.6 gi|257372942|ref|YP_003175716.1| - 0.022 15.3 0.1 0.075 13.6 0.0 2.0 2 0 0 2 2 2 0 AAA domain Zeta_toxin PF06414.12 gi|257372942|ref|YP_003175716.1| - 0.025 13.9 0.2 5 6.4 0.1 2.3 2 0 0 2 2 2 0 Zeta toxin AAA_14 PF13173.6 gi|257372942|ref|YP_003175716.1| - 0.031 14.3 0.0 0.079 13.0 0.0 1.7 1 0 0 1 1 1 0 AAA domain TPR_2 PF07719.17 gi|257372942|ref|YP_003175716.1| - 0.031 14.4 0.5 0.082 13.1 0.5 1.7 1 0 0 1 1 1 0 Tetratricopeptide repeat ATPase PF06745.13 gi|257372942|ref|YP_003175716.1| - 0.035 13.5 0.9 0.76 9.1 0.1 2.8 2 1 1 3 3 3 0 KaiC TPR_1 PF00515.28 gi|257372942|ref|YP_003175716.1| - 0.039 13.8 0.3 0.089 12.6 0.3 1.6 1 0 0 1 1 1 0 Tetratricopeptide repeat Vps4_C PF09336.10 gi|257372942|ref|YP_003175716.1| - 0.055 13.5 0.1 0.22 11.6 0.0 2.1 2 0 0 2 2 1 0 Vps4 C terminal oligomerisation domain AAA_7 PF12775.7 gi|257372942|ref|YP_003175716.1| - 0.058 12.9 0.0 0.11 12.0 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region TIP49 PF06068.13 gi|257372942|ref|YP_003175716.1| - 0.093 11.9 0.1 0.23 10.6 0.0 1.7 2 0 0 2 2 2 0 TIP49 P-loop domain RNA_helicase PF00910.22 gi|257372942|ref|YP_003175716.1| - 0.093 13.1 0.0 0.56 10.6 0.0 2.2 2 0 0 2 2 2 0 RNA helicase AAA_3 PF07726.11 gi|257372942|ref|YP_003175716.1| - 0.15 11.9 0.0 0.26 11.2 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) Sigma54_activ_2 PF14532.6 gi|257372942|ref|YP_003175716.1| - 0.16 12.1 0.0 0.49 10.5 0.0 1.7 1 1 0 1 1 1 0 Sigma-54 interaction domain AAA_11 PF13086.6 gi|257372942|ref|YP_003175716.1| - 0.48 10.2 3.9 0.79 9.5 0.0 2.2 2 0 0 2 2 2 0 AAA domain DUF4085 PF13315.6 gi|257372943|ref|YP_003175717.1| - 5.6e-05 22.9 4.5 5.6e-05 22.9 4.5 1.4 2 0 0 2 2 2 1 Protein of unknown function (DUF4085) GAS PF13851.6 gi|257372943|ref|YP_003175717.1| - 0.0026 17.1 19.6 0.0027 17.1 12.7 2.5 1 1 1 2 2 2 1 Growth-arrest specific micro-tubule binding Lsr2 PF11774.8 gi|257372943|ref|YP_003175717.1| - 0.0086 16.2 5.4 0.032 14.4 5.4 2.1 1 1 0 1 1 1 1 Lsr2 TRAF_BIRC3_bd PF16673.5 gi|257372943|ref|YP_003175717.1| - 0.032 14.0 7.3 0.039 13.8 2.4 2.4 2 0 0 2 2 2 0 TNF receptor-associated factor BIRC3 binding domain Seryl_tRNA_N PF02403.22 gi|257372943|ref|YP_003175717.1| - 0.038 14.2 20.9 1.6 9.0 3.5 3.2 2 1 1 3 3 3 0 Seryl-tRNA synthetase N-terminal domain Styelin PF17562.2 gi|257372943|ref|YP_003175717.1| - 0.039 14.3 0.5 0.12 12.7 0.5 1.8 1 0 0 1 1 1 0 Styelin tRNA-synt_1d PF00750.19 gi|257372943|ref|YP_003175717.1| - 0.044 12.7 3.6 0.054 12.4 3.6 1.1 1 0 0 1 1 1 0 tRNA synthetases class I (R) UCH PF00443.29 gi|257372943|ref|YP_003175717.1| - 0.18 11.2 4.5 0.21 11.0 4.5 1.2 1 0 0 1 1 1 0 Ubiquitin carboxyl-terminal hydrolase DUF4201 PF13870.6 gi|257372943|ref|YP_003175717.1| - 0.28 10.9 19.0 0.4 10.4 19.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4201) OmpH PF03938.14 gi|257372943|ref|YP_003175717.1| - 0.37 11.1 23.5 2.8e+02 1.8 23.5 2.3 1 1 0 1 1 1 0 Outer membrane protein (OmpH-like) T6PP_N PF18572.1 gi|257372943|ref|YP_003175717.1| - 0.39 10.6 7.6 4.5 7.2 7.6 2.5 1 1 0 1 1 1 0 Trehalose-6-phosphate phosphatase N-terminal helical bundle domain ECH_2 PF16113.5 gi|257372943|ref|YP_003175717.1| - 0.69 9.3 5.5 0.86 9.0 5.5 1.3 1 0 0 1 1 1 0 Enoyl-CoA hydratase/isomerase DUF883 PF05957.13 gi|257372943|ref|YP_003175717.1| - 2.3 8.9 6.0 2.5 8.8 4.1 2.1 1 1 2 3 3 3 0 Bacterial protein of unknown function (DUF883) MbeD_MobD PF04899.12 gi|257372943|ref|YP_003175717.1| - 2.6 8.2 8.2 2.6 8.2 4.0 2.8 1 1 1 2 2 2 0 MbeD/MobD like YlqD PF11068.8 gi|257372943|ref|YP_003175717.1| - 2.9 8.3 15.7 0.34 11.3 6.9 2.2 1 1 1 2 2 2 0 YlqD protein Spore_III_AB PF09548.10 gi|257372943|ref|YP_003175717.1| - 3.2 7.8 12.9 3.8 7.6 9.4 2.1 1 1 1 2 2 2 0 Stage III sporulation protein AB (spore_III_AB) Muted PF14942.6 gi|257372943|ref|YP_003175717.1| - 4.9 7.5 19.3 0.23 11.8 5.7 2.4 1 1 1 2 2 2 0 Organelle biogenesis, Muted-like protein Prominin PF05478.11 gi|257372943|ref|YP_003175717.1| - 8.5 4.2 7.5 4.8 5.0 2.3 1.8 1 1 1 2 2 2 0 Prominin LUC7 PF03194.15 gi|257372944|ref|YP_003175718.1| - 0.84 9.2 11.5 1.1 8.9 11.3 1.4 1 1 0 1 1 1 0 LUC7 N_terminus PIN_8 PF18476.1 gi|257372944|ref|YP_003175718.1| - 2.4 8.0 12.2 0.54 10.1 6.9 1.9 1 1 1 2 2 2 0 PIN like domain Erp_C PF06780.11 gi|257372944|ref|YP_003175718.1| - 5.3 7.1 14.7 1.1 9.3 3.3 3.1 2 2 1 3 3 3 0 Erp protein C-terminus DUF883 PF05957.13 gi|257372944|ref|YP_003175718.1| - 9.6 6.9 13.9 85 3.8 7.6 3.4 1 1 1 3 3 3 0 Bacterial protein of unknown function (DUF883) Nitrate_red_del PF02613.15 gi|257372945|ref|YP_003175719.1| - 3.8e-31 107.9 0.0 4.6e-31 107.7 0.0 1.2 1 0 0 1 1 1 1 Nitrate reductase delta subunit NrfD PF03916.14 gi|257372946|ref|YP_003175720.1| - 2.1e-72 244.4 15.6 3.3e-72 243.8 15.6 1.3 1 0 0 1 1 1 1 Polysulphide reductase, NrfD DUF2976 PF11190.8 gi|257372946|ref|YP_003175720.1| - 0.21 11.4 0.1 0.21 11.4 0.1 2.8 4 0 0 4 4 4 0 Protein of unknown function (DUF2976) Fer4_11 PF13247.6 gi|257372947|ref|YP_003175721.1| - 5.3e-23 81.0 18.2 4.1e-15 55.7 7.1 2.7 3 0 0 3 3 3 2 4Fe-4S dicluster domain Fer4_7 PF12838.7 gi|257372947|ref|YP_003175721.1| - 5.1e-18 65.4 27.3 4.8e-09 36.7 10.4 3.1 2 2 1 3 3 3 3 4Fe-4S dicluster domain Fer4_10 PF13237.6 gi|257372947|ref|YP_003175721.1| - 5.1e-17 61.7 23.5 1.9e-10 40.7 7.2 3.5 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|257372947|ref|YP_003175721.1| - 3.8e-14 52.1 33.6 4.9e-08 32.7 4.4 4.5 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4 PF00037.27 gi|257372947|ref|YP_003175721.1| - 8e-14 50.8 40.4 1.3e-08 34.3 4.3 5.7 5 1 0 5 5 5 3 4Fe-4S binding domain Fer4_2 PF12797.7 gi|257372947|ref|YP_003175721.1| - 4.1e-11 42.3 30.6 1.6e-05 24.7 2.0 4.5 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_9 PF13187.6 gi|257372947|ref|YP_003175721.1| - 4.2e-11 42.8 26.6 1.4e-06 28.4 7.6 3.0 2 1 0 2 2 2 2 4Fe-4S dicluster domain Fer4_8 PF13183.6 gi|257372947|ref|YP_003175721.1| - 3.6e-10 40.1 20.7 9e-06 26.1 5.7 2.5 2 0 0 2 2 2 2 4Fe-4S dicluster domain Fer4_21 PF14697.6 gi|257372947|ref|YP_003175721.1| - 1.9e-06 27.9 29.1 0.00028 21.0 0.5 4.0 2 1 2 4 4 4 3 4Fe-4S dicluster domain Fer4_3 PF12798.7 gi|257372947|ref|YP_003175721.1| - 1.6e-05 25.5 43.4 0.018 16.0 7.2 4.2 4 0 0 4 4 4 3 4Fe-4S binding domain Fer4_17 PF13534.6 gi|257372947|ref|YP_003175721.1| - 2.2e-05 24.9 27.0 0.016 15.7 7.8 4.1 3 1 1 4 4 4 3 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|257372947|ref|YP_003175721.1| - 3.2e-05 24.1 37.9 0.0012 19.2 3.3 4.4 4 1 0 4 4 4 3 4Fe-4S binding domain Fer4_16 PF13484.6 gi|257372947|ref|YP_003175721.1| - 0.0043 18.0 30.7 1.1 10.2 3.1 4.4 2 1 2 4 4 4 3 4Fe-4S double cluster binding domain Fer4_13 PF13370.6 gi|257372947|ref|YP_003175721.1| - 0.013 16.0 0.6 0.013 16.0 0.6 4.5 5 0 0 5 5 5 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_15 PF13459.6 gi|257372947|ref|YP_003175721.1| - 0.019 15.7 1.5 0.019 15.7 1.5 4.4 3 3 0 3 3 3 0 4Fe-4S single cluster domain Fer4_20 PF14691.6 gi|257372947|ref|YP_003175721.1| - 0.64 9.8 26.3 0.54 10.0 4.5 4.1 3 1 1 4 4 4 0 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Fer4_18 PF13746.6 gi|257372947|ref|YP_003175721.1| - 0.95 9.7 21.5 1.5 9.1 8.8 4.0 2 1 2 4 4 4 0 4Fe-4S dicluster domain Molybdopterin PF00384.22 gi|257372948|ref|YP_003175722.1| - 5.5e-53 180.5 0.0 3.1e-52 178.0 0.0 1.9 1 1 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.21 gi|257372948|ref|YP_003175722.1| - 5.1e-24 84.5 0.0 1.6e-23 82.9 0.0 1.8 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Molybdop_Fe4S4 PF04879.16 gi|257372948|ref|YP_003175722.1| - 2.1e-10 40.4 2.5 2.8e-10 40.0 1.0 2.1 2 0 0 2 2 2 1 Molybdopterin oxidoreductase Fe4S4 domain TAT_signal PF10518.9 gi|257372948|ref|YP_003175722.1| - 0.064 13.1 0.7 0.13 12.1 0.7 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence SnoaL_2 PF12680.7 gi|257372948|ref|YP_003175722.1| - 1.3 9.7 4.2 3.1 8.5 0.5 3.4 3 1 0 3 3 3 0 SnoaL-like domain Ferredoxin_N PF16947.5 gi|257372949|ref|YP_003175723.1| - 3.2e-33 113.6 0.8 4e-33 113.3 0.8 1.1 1 0 0 1 1 1 1 N-terminal region of 4Fe-4S ferredoxin iron-sulfur binding SHOCT PF09851.9 gi|257372949|ref|YP_003175723.1| - 0.12 12.1 0.2 0.24 11.2 0.2 1.6 1 0 0 1 1 1 0 Short C-terminal domain HTH_10 PF04967.12 gi|257372950|ref|YP_003175724.1| - 6.5e-17 61.1 0.1 1.1e-16 60.3 0.1 1.4 1 0 0 1 1 1 1 HTH DNA binding domain HTH_24 PF13412.6 gi|257372950|ref|YP_003175724.1| - 0.004 16.7 0.0 0.0078 15.8 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_1 PF00126.27 gi|257372950|ref|YP_003175724.1| - 0.01 15.8 0.2 0.022 14.7 0.2 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Sigma70_r4 PF04545.16 gi|257372950|ref|YP_003175724.1| - 0.011 15.3 0.0 0.027 14.0 0.0 1.7 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_20 PF12840.7 gi|257372950|ref|YP_003175724.1| - 0.011 15.7 0.3 0.043 13.9 0.1 2.1 2 0 0 2 2 2 0 Helix-turn-helix domain HTH_AsnC-type PF13404.6 gi|257372950|ref|YP_003175724.1| - 0.021 14.7 0.0 0.042 13.7 0.0 1.5 1 0 0 1 1 1 0 AsnC-type helix-turn-helix domain PuR_N PF09182.10 gi|257372950|ref|YP_003175724.1| - 0.05 13.5 0.1 0.39 10.7 0.0 2.1 2 0 0 2 2 2 0 Bacterial purine repressor, N-terminal MarR_2 PF12802.7 gi|257372950|ref|YP_003175724.1| - 0.057 13.3 0.5 0.26 11.2 0.0 2.2 2 1 1 3 3 3 0 MarR family HTH_3 PF01381.22 gi|257372950|ref|YP_003175724.1| - 0.12 12.4 0.0 0.24 11.5 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix TMF_TATA_bd PF12325.8 gi|257372953|ref|YP_003175727.1| - 0.016 15.5 4.5 0.43 10.8 0.2 2.7 3 0 0 3 3 3 0 TATA element modulatory factor 1 TATA binding HHH_8 PF14716.6 gi|257372953|ref|YP_003175727.1| - 0.031 14.6 0.4 0.18 12.2 0.4 2.3 1 1 1 2 2 2 0 Helix-hairpin-helix domain OmpH PF03938.14 gi|257372953|ref|YP_003175727.1| - 0.42 11.0 6.7 0.24 11.7 2.2 2.0 1 1 1 2 2 2 0 Outer membrane protein (OmpH-like) Fe_dep_repress PF01325.19 gi|257372954|ref|YP_003175728.1| - 3.2e-12 46.4 0.1 4.7e-12 45.9 0.1 1.3 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.7 gi|257372954|ref|YP_003175728.1| - 8.7e-07 28.7 0.1 1.4e-06 28.1 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|257372954|ref|YP_003175728.1| - 3.5e-05 24.2 0.1 5e-05 23.7 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR PF01047.22 gi|257372954|ref|YP_003175728.1| - 0.00027 20.8 0.0 0.00043 20.1 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_12 PF08461.10 gi|257372954|ref|YP_003175728.1| - 0.0039 17.1 0.0 0.0076 16.2 0.0 1.5 1 0 0 1 1 1 1 Ribonuclease R winged-helix domain HTH_Crp_2 PF13545.6 gi|257372954|ref|YP_003175728.1| - 0.0084 16.1 0.0 0.012 15.5 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain Rio2_N PF09202.11 gi|257372954|ref|YP_003175728.1| - 0.011 15.9 0.0 0.017 15.3 0.0 1.2 1 0 0 1 1 1 0 Rio2, N-terminal B-block_TFIIIC PF04182.12 gi|257372954|ref|YP_003175728.1| - 0.016 15.3 0.0 0.022 14.9 0.0 1.2 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC TrmB PF01978.19 gi|257372954|ref|YP_003175728.1| - 0.024 14.5 0.1 0.037 13.9 0.1 1.3 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Rrf2 PF02082.20 gi|257372954|ref|YP_003175728.1| - 0.13 12.6 0.0 0.2 12.0 0.0 1.3 1 0 0 1 1 1 0 Transcriptional regulator DUF4149 PF13664.6 gi|257372955|ref|YP_003175729.1| - 0.022 15.1 0.5 0.022 15.1 0.5 2.8 3 1 0 3 3 3 0 Domain of unknown function (DUF4149) DUF2249 PF10006.9 gi|257372957|ref|YP_003175731.1| - 7e-85 278.9 21.8 1e-27 95.8 0.8 4.1 4 0 0 4 4 4 4 Uncharacterized conserved protein (DUF2249) DUF2249 PF10006.9 gi|257372958|ref|YP_003175732.1| - 2.5e-20 72.1 0.7 2.9e-20 71.9 0.7 1.1 1 0 0 1 1 1 1 Uncharacterized conserved protein (DUF2249) TusA PF01206.17 gi|257372959|ref|YP_003175733.1| - 1.7e-08 34.2 0.0 2e-08 33.9 0.0 1.1 1 0 0 1 1 1 1 Sulfurtransferase TusA CopD PF05425.13 gi|257372960|ref|YP_003175734.1| - 1.7e-05 25.2 4.7 1.7e-05 25.2 4.7 1.9 1 1 1 2 2 2 1 Copper resistance protein D DUF836 PF05768.14 gi|257372961|ref|YP_003175735.1| - 2.8e-13 50.1 0.1 3.1e-13 49.9 0.1 1.0 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Glutaredoxin PF00462.24 gi|257372961|ref|YP_003175735.1| - 0.00015 21.9 0.1 0.00032 20.8 0.1 1.6 1 1 1 2 2 2 1 Glutaredoxin Thioredoxin_3 PF13192.6 gi|257372961|ref|YP_003175735.1| - 0.0026 17.8 0.0 0.0028 17.7 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin domain GP24_25 PF17388.2 gi|257372961|ref|YP_003175735.1| - 0.026 14.5 0.2 0.027 14.4 0.2 1.1 1 0 0 1 1 1 0 Tail assembly gene products 24 & 25 Arc PF03869.14 gi|257372961|ref|YP_003175735.1| - 0.074 12.9 0.5 0.37 10.7 0.0 1.9 2 0 0 2 2 2 0 Arc-like DNA binding domain PP2C_2 PF13672.6 gi|257372962|ref|YP_003175736.1| - 5.5e-15 55.6 3.7 8.2e-15 55.0 3.7 1.2 1 0 0 1 1 1 1 Protein phosphatase 2C PP2C PF00481.21 gi|257372962|ref|YP_003175736.1| - 2.2e-10 40.6 0.1 6.4e-08 32.5 0.1 2.1 2 0 0 2 2 2 2 Protein phosphatase 2C SpoIIE PF07228.12 gi|257372962|ref|YP_003175736.1| - 1e-06 28.8 6.2 8e-06 25.9 6.2 1.9 1 1 0 1 1 1 1 Stage II sporulation protein E (SpoIIE) DUF3450 PF11932.8 gi|257372963|ref|YP_003175737.1| - 0.0019 17.6 2.1 0.0019 17.6 2.1 3.2 1 1 1 2 2 2 1 Protein of unknown function (DUF3450) CENP-F_leu_zip PF10473.9 gi|257372963|ref|YP_003175737.1| - 0.0031 17.5 15.7 0.0031 17.5 15.7 3.8 3 1 1 4 4 4 2 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 Baculo_PEP_C PF04513.12 gi|257372963|ref|YP_003175737.1| - 0.0049 16.9 11.7 0.11 12.5 0.4 3.4 2 1 1 3 3 2 2 Baculovirus polyhedron envelope protein, PEP, C terminus DUF1664 PF07889.12 gi|257372963|ref|YP_003175737.1| - 0.024 14.7 16.2 0.074 13.1 1.4 3.0 3 0 0 3 3 3 0 Protein of unknown function (DUF1664) CHDCT2 PF08074.11 gi|257372963|ref|YP_003175737.1| - 0.097 12.8 5.9 0.062 13.5 2.3 2.5 2 0 0 2 2 2 0 CHDCT2 (NUC038) domain DUF948 PF06103.11 gi|257372963|ref|YP_003175737.1| - 0.13 12.5 4.9 6.6 7.1 0.1 3.4 1 1 1 3 3 3 0 Bacterial protein of unknown function (DUF948) DUF724 PF05266.14 gi|257372963|ref|YP_003175737.1| - 0.42 10.4 19.3 0.14 12.0 7.6 3.1 2 1 2 4 4 4 0 Protein of unknown function (DUF724) Atg14 PF10186.9 gi|257372963|ref|YP_003175737.1| - 0.57 9.2 24.8 0.16 11.0 17.8 2.9 2 1 1 3 3 3 0 Vacuolar sorting 38 and autophagy-related subunit 14 YlqD PF11068.8 gi|257372963|ref|YP_003175737.1| - 0.67 10.3 23.3 0.083 13.3 5.4 3.7 2 2 1 3 3 3 0 YlqD protein Tweety PF04906.13 gi|257372963|ref|YP_003175737.1| - 0.82 8.3 2.3 1 7.9 0.9 1.8 1 1 1 2 2 2 0 Tweety ABC_tran_CTD PF16326.5 gi|257372963|ref|YP_003175737.1| - 0.87 9.9 27.3 9.7 6.5 0.4 4.7 1 1 2 3 3 3 0 ABC transporter C-terminal domain TLE_N PF03920.15 gi|257372963|ref|YP_003175737.1| - 1.2 9.2 6.9 2.4 8.2 0.3 3.1 2 1 0 3 3 3 0 Groucho/TLE N-terminal Q-rich domain YabA PF06156.13 gi|257372963|ref|YP_003175737.1| - 1.9 9.2 23.2 1.3 9.7 0.2 5.1 4 1 2 6 6 4 0 Initiation control protein YabA CALCOCO1 PF07888.11 gi|257372963|ref|YP_003175737.1| - 2 7.2 39.9 0.19 10.5 29.7 2.3 2 0 0 2 2 2 0 Calcium binding and coiled-coil domain (CALCOCO1) like Cytochrom_B562 PF07361.11 gi|257372963|ref|YP_003175737.1| - 2.1 9.1 16.6 4.2 8.1 1.9 4.6 3 1 1 4 4 4 0 Cytochrome b562 DASH_Dam1 PF08653.10 gi|257372963|ref|YP_003175737.1| - 2.6 7.9 4.3 31 4.5 0.0 4.3 4 1 1 5 5 5 0 DASH complex subunit Dam1 Spc7 PF08317.11 gi|257372963|ref|YP_003175737.1| - 3.4 6.5 37.0 0.3 9.9 14.3 3.1 2 1 1 3 3 3 0 Spc7 kinetochore protein RasGAP_C PF03836.15 gi|257372963|ref|YP_003175737.1| - 4.6 7.4 14.2 4 7.6 3.9 3.4 2 1 1 3 3 3 0 RasGAP C-terminus FlaC_arch PF05377.11 gi|257372963|ref|YP_003175737.1| - 5.1 7.6 20.1 12 6.4 0.1 5.9 4 1 1 5 5 5 0 Flagella accessory protein C (FlaC) Exonuc_VII_L PF02601.15 gi|257372963|ref|YP_003175737.1| - 7.9 5.9 24.2 0.14 11.7 7.7 2.9 1 1 1 2 2 2 0 Exonuclease VII, large subunit GIT_CC PF16559.5 gi|257372963|ref|YP_003175737.1| - 8.6 6.3 8.6 29 4.6 0.5 3.9 3 1 1 4 4 4 0 GIT coiled-coil Rho guanine nucleotide exchange factor DUF4407 PF14362.6 gi|257372963|ref|YP_003175737.1| - 9.1 5.5 27.3 4.6 6.5 17.3 2.6 1 1 1 2 2 2 0 Domain of unknown function (DUF4407) GvpG PF05120.12 gi|257372963|ref|YP_003175737.1| - 9.3 6.3 15.3 0.15 12.1 2.2 4.0 3 1 1 4 4 4 0 Gas vesicle protein G COG5 PF10392.9 gi|257372963|ref|YP_003175737.1| - 9.3 6.4 12.3 8.6 6.5 3.4 2.7 1 1 1 2 2 2 0 Golgi transport complex subunit 5 Prominin PF05478.11 gi|257372963|ref|YP_003175737.1| - 9.3 4.1 8.3 16 3.3 7.7 1.6 1 1 0 1 1 1 0 Prominin ATG16 PF08614.11 gi|257372963|ref|YP_003175737.1| - 9.9 6.3 37.0 19 5.4 8.3 3.3 1 1 1 2 2 2 0 Autophagy protein 16 (ATG16) DUF2344 PF10105.9 gi|257372964|ref|YP_003175738.1| - 0.021 14.7 0.1 0.028 14.3 0.1 1.2 1 0 0 1 1 1 0 Uncharacterized protein conserved in bacteria (DUF2344) COX16 PF14138.6 gi|257372964|ref|YP_003175738.1| - 4.3 7.9 5.9 9.9 6.8 0.1 2.8 1 1 1 2 2 2 0 Cytochrome c oxidase assembly protein COX16 Pkinase PF00069.25 gi|257372967|ref|YP_003175741.1| - 7.6e-26 91.0 0.0 1e-25 90.6 0.0 1.1 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|257372967|ref|YP_003175741.1| - 9.1e-22 77.6 0.0 1.2e-21 77.2 0.0 1.1 1 0 0 1 1 1 1 Protein tyrosine kinase Kdo PF06293.14 gi|257372967|ref|YP_003175741.1| - 0.15 11.4 0.0 0.28 10.5 0.0 1.4 1 0 0 1 1 1 0 Lipopolysaccharide kinase (Kdo/WaaP) family Pkinase PF00069.25 gi|257372968|ref|YP_003175742.1| - 2.5e-26 92.6 0.0 3.4e-26 92.2 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain HEAT_2 PF13646.6 gi|257372968|ref|YP_003175742.1| - 5.4e-22 78.0 45.4 6.2e-08 32.9 2.1 7.0 4 2 3 7 7 7 6 HEAT repeats Pkinase_Tyr PF07714.17 gi|257372968|ref|YP_003175742.1| - 2.3e-18 66.4 0.0 3e-18 66.0 0.0 1.1 1 0 0 1 1 1 1 Protein tyrosine kinase HEAT PF02985.22 gi|257372968|ref|YP_003175742.1| - 6.4e-16 57.1 15.0 0.045 14.0 0.0 9.9 11 0 0 11 11 10 4 HEAT repeat HEAT_EZ PF13513.6 gi|257372968|ref|YP_003175742.1| - 1.6e-13 50.9 35.5 3.2e-07 30.7 0.9 9.6 7 3 0 7 7 7 2 HEAT-like repeat Adaptin_N PF01602.20 gi|257372968|ref|YP_003175742.1| - 8.7e-13 47.7 0.0 0.00083 18.0 0.0 4.3 4 1 1 5 5 5 3 Adaptin N terminal region Cnd1 PF12717.7 gi|257372968|ref|YP_003175742.1| - 4.7e-08 33.2 0.0 0.00064 19.8 0.0 3.5 3 0 0 3 3 3 2 non-SMC mitotic condensation complex subunit 1 RTP1_C1 PF10363.9 gi|257372968|ref|YP_003175742.1| - 0.015 15.5 0.0 0.85 9.8 0.0 3.1 2 1 0 2 2 2 0 Required for nuclear transport of RNA pol II C-terminus 1 API5 PF05918.11 gi|257372968|ref|YP_003175742.1| - 0.043 12.6 0.3 0.35 9.6 0.2 2.4 2 1 1 3 3 3 0 Apoptosis inhibitory protein 5 (API5) Arm PF00514.23 gi|257372968|ref|YP_003175742.1| - 0.044 13.8 8.4 8.9 6.5 0.0 6.8 8 0 0 8 8 8 0 Armadillo/beta-catenin-like repeat HEAT_PBS PF03130.16 gi|257372968|ref|YP_003175742.1| - 0.12 13.1 0.1 0.12 13.1 0.1 9.1 9 1 0 9 9 9 0 PBS lyase HEAT-like repeat Gene66 PF02053.15 gi|257372968|ref|YP_003175742.1| - 0.13 11.9 0.2 0.26 10.9 0.2 1.4 1 0 0 1 1 1 0 Gene 66 (IR5) protein Cnd3 PF12719.7 gi|257372968|ref|YP_003175742.1| - 0.19 10.9 0.0 0.34 10.1 0.0 1.3 1 0 0 1 1 1 0 Nuclear condensing complex subunits, C-term domain Pkinase PF00069.25 gi|257372969|ref|YP_003175743.1| - 1.3e-32 113.2 0.0 1.7e-32 112.8 0.0 1.1 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|257372969|ref|YP_003175743.1| - 2.1e-25 89.5 0.0 2.6e-25 89.2 0.0 1.1 1 0 0 1 1 1 1 Protein tyrosine kinase HTH_20 PF12840.7 gi|257372969|ref|YP_003175743.1| - 6.9e-05 22.8 0.1 0.00023 21.2 0.1 1.9 1 0 0 1 1 1 1 Helix-turn-helix domain APH PF01636.23 gi|257372969|ref|YP_003175743.1| - 0.00066 19.7 0.1 0.21 11.5 0.1 2.5 1 1 1 2 2 2 2 Phosphotransferase enzyme family HTH_27 PF13463.6 gi|257372969|ref|YP_003175743.1| - 0.022 15.2 0.0 0.046 14.2 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain Gly-zipper_YMGG PF13441.6 gi|257372970|ref|YP_003175744.1| - 0.0054 16.4 1.9 0.0054 16.4 1.9 1.7 2 1 0 2 2 2 1 YMGG-like Gly-zipper Phage_holin_3_2 PF04550.12 gi|257372970|ref|YP_003175744.1| - 0.1 13.1 10.9 0.14 12.7 10.9 1.2 1 0 0 1 1 1 0 Phage holin family 2 DUF1072 PF06380.11 gi|257372970|ref|YP_003175744.1| - 0.25 11.2 3.9 1.2 9.1 0.1 2.4 2 1 0 2 2 2 0 Protein of unknown function (DUF1072) PT-VENN PF04829.13 gi|257372970|ref|YP_003175744.1| - 0.41 10.8 4.4 13 6.0 0.1 2.3 2 0 0 2 2 2 0 Pre-toxin domain with VENN motif Phage_holin_5_2 PF16079.5 gi|257372970|ref|YP_003175744.1| - 0.99 9.8 9.7 1.8 8.9 4.4 2.1 1 1 1 2 2 2 0 Phage holin family Hol44, in holin superfamily V DUF3093 PF11292.8 gi|257372970|ref|YP_003175744.1| - 3.2 8.0 5.6 4.2 7.6 5.4 1.4 1 1 0 1 1 1 0 Protein of unknown function (DUF3093) PQQ_3 PF13570.6 gi|257372971|ref|YP_003175745.1| - 1.2e-82 270.6 62.8 4.9e-14 52.3 1.4 8.8 8 0 0 8 8 8 8 PQQ-like domain PQQ PF01011.21 gi|257372971|ref|YP_003175745.1| - 1.9e-67 220.2 31.5 2.8e-10 39.6 0.4 9.1 9 0 0 9 9 9 7 PQQ enzyme repeat PQQ_2 PF13360.6 gi|257372971|ref|YP_003175745.1| - 9.9e-62 208.6 30.3 1.2e-22 80.7 5.1 3.4 1 1 2 3 3 3 3 PQQ-like domain Pkinase PF00069.25 gi|257372971|ref|YP_003175745.1| - 1.8e-24 86.5 0.0 2.8e-24 85.9 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain HEAT_2 PF13646.6 gi|257372971|ref|YP_003175745.1| - 2.1e-12 47.3 21.9 6.2e-07 29.7 10.4 2.9 2 0 0 2 2 2 2 HEAT repeats Pkinase_Tyr PF07714.17 gi|257372971|ref|YP_003175745.1| - 1e-10 41.3 0.0 1.6e-10 40.7 0.0 1.2 1 0 0 1 1 1 1 Protein tyrosine kinase Adaptin_N PF01602.20 gi|257372971|ref|YP_003175745.1| - 3.1e-08 32.6 0.0 0.0029 16.3 0.0 2.1 1 1 0 2 2 2 2 Adaptin N terminal region Cnd1 PF12717.7 gi|257372971|ref|YP_003175745.1| - 3.3e-08 33.7 0.1 0.11 12.6 0.0 3.2 1 1 2 3 3 3 3 non-SMC mitotic condensation complex subunit 1 HEAT_EZ PF13513.6 gi|257372971|ref|YP_003175745.1| - 3e-07 30.8 26.6 0.0021 18.5 1.9 5.0 1 1 4 5 5 5 4 HEAT-like repeat Arm PF00514.23 gi|257372971|ref|YP_003175745.1| - 0.0015 18.5 1.7 0.54 10.4 0.3 3.5 3 0 0 3 3 3 1 Armadillo/beta-catenin-like repeat HEAT PF02985.22 gi|257372971|ref|YP_003175745.1| - 0.0054 16.9 14.6 2 8.9 0.1 5.4 5 0 0 5 5 5 1 HEAT repeat API5 PF05918.11 gi|257372971|ref|YP_003175745.1| - 0.025 13.4 0.5 0.29 9.9 0.2 2.0 2 0 0 2 2 2 0 Apoptosis inhibitory protein 5 (API5) IFRD PF05004.13 gi|257372971|ref|YP_003175745.1| - 0.046 12.8 1.5 0.068 12.3 0.5 1.7 2 0 0 2 2 2 0 Interferon-related developmental regulator (IFRD) CLASP_N PF12348.8 gi|257372971|ref|YP_003175745.1| - 0.16 11.5 0.0 0.9 9.1 0.0 1.8 1 1 0 2 2 2 0 CLASP N terminal Pkinase PF00069.25 gi|257372972|ref|YP_003175746.1| - 2.1e-25 89.6 0.0 2.9e-25 89.1 0.0 1.1 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|257372972|ref|YP_003175746.1| - 1.6e-15 57.1 0.0 2.1e-15 56.7 0.0 1.1 1 0 0 1 1 1 1 Protein tyrosine kinase CENP-B_N PF04218.13 gi|257372972|ref|YP_003175746.1| - 0.24 11.1 1.3 27 4.5 0.2 3.0 3 0 0 3 3 3 0 CENP-B N-terminal DNA-binding domain N_formyltrans_C PF18216.1 gi|257372972|ref|YP_003175746.1| - 0.95 9.2 3.3 3.6 7.3 0.0 2.7 3 0 0 3 3 3 0 N-formyltransferase dimerization C-terminal domain Cpn60_TCP1 PF00118.24 gi|257372973|ref|YP_003175747.1| - 1.2e-14 53.8 0.0 5.4e-10 38.5 0.0 2.1 1 1 1 2 2 2 2 TCP-1/cpn60 chaperonin family HEAT_EZ PF13513.6 gi|257372973|ref|YP_003175747.1| - 0.082 13.4 1.0 0.66 10.6 0.1 2.8 2 1 1 3 3 3 0 HEAT-like repeat OrfB_Zn_ribbon PF07282.11 gi|257372974|ref|YP_003175748.1| - 1e-20 73.4 1.6 2.1e-20 72.4 1.6 1.6 1 0 0 1 1 1 1 Putative transposase DNA-binding domain OrfB_IS605 PF01385.19 gi|257372974|ref|YP_003175748.1| - 7.7e-06 26.1 0.2 2.1e-05 24.7 0.2 1.7 1 0 0 1 1 1 1 Probable transposase DUF2283 PF10049.9 gi|257372974|ref|YP_003175748.1| - 0.024 14.9 0.1 0.057 13.6 0.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2283) IBR PF01485.21 gi|257372974|ref|YP_003175748.1| - 0.024 14.8 0.9 0.053 13.7 0.9 1.5 1 0 0 1 1 1 0 IBR domain, a half RING-finger domain Mrr_cat PF04471.12 gi|257372975|ref|YP_003175749.1| - 1.5e-25 89.4 0.1 3e-25 88.5 0.1 1.5 1 0 0 1 1 1 1 Restriction endonuclease Mrr_cat_2 PF13156.6 gi|257372975|ref|YP_003175749.1| - 7.8e-09 35.5 0.0 1.7e-08 34.4 0.0 1.5 1 0 0 1 1 1 1 Restriction endonuclease HTH_47 PF16221.5 gi|257372975|ref|YP_003175749.1| - 0.0038 16.8 0.5 4.5 6.9 0.0 3.4 4 1 0 4 4 4 2 winged helix-turn-helix GGDEF_2 PF17853.1 gi|257372975|ref|YP_003175749.1| - 0.023 14.9 2.9 0.072 13.3 1.4 2.3 2 0 0 2 2 2 0 GGDEF-like domain Fic PF02661.18 gi|257372976|ref|YP_003175750.1| - 3.3e-09 37.5 0.1 2.7e-08 34.6 0.0 2.3 2 1 0 2 2 2 1 Fic/DOC family DZR PF12773.7 gi|257372978|ref|YP_003175752.1| - 0.00082 19.3 0.9 0.0013 18.8 0.9 1.2 1 0 0 1 1 1 1 Double zinc ribbon HypA PF01155.19 gi|257372978|ref|YP_003175752.1| - 0.00095 19.2 0.1 0.0013 18.7 0.1 1.2 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Phage_holin_3_6 PF07332.11 gi|257372978|ref|YP_003175752.1| - 0.0053 16.8 0.9 0.0072 16.3 0.9 1.1 1 0 0 1 1 1 1 Putative Actinobacterial Holin-X, holin superfamily III zf-ribbon_3 PF13248.6 gi|257372978|ref|YP_003175752.1| - 0.0098 15.3 1.6 0.037 13.5 0.2 2.1 2 0 0 2 2 2 1 zinc-ribbon domain Zn-ribbon_8 PF09723.10 gi|257372978|ref|YP_003175752.1| - 0.026 14.6 2.2 0.048 13.8 2.0 1.5 1 1 0 1 1 1 0 Zinc ribbon domain zinc_ribbon_6 PF14599.6 gi|257372978|ref|YP_003175752.1| - 0.029 14.4 0.1 0.039 14.0 0.1 1.2 1 0 0 1 1 1 0 Zinc-ribbon TF_Zn_Ribbon PF08271.12 gi|257372978|ref|YP_003175752.1| - 0.042 13.4 3.6 0.076 12.5 3.6 1.4 1 0 0 1 1 1 0 TFIIB zinc-binding Cytochrome-c551 PF10643.9 gi|257372978|ref|YP_003175752.1| - 0.057 13.0 0.0 0.09 12.3 0.0 1.2 1 0 0 1 1 1 0 Photosystem P840 reaction-centre cytochrome c-551 OrfB_Zn_ribbon PF07282.11 gi|257372978|ref|YP_003175752.1| - 0.061 13.3 0.4 0.098 12.6 0.4 1.3 1 0 0 1 1 1 0 Putative transposase DNA-binding domain YhfH PF14149.6 gi|257372978|ref|YP_003175752.1| - 0.084 12.9 0.7 0.13 12.2 0.7 1.3 1 0 0 1 1 1 0 YhfH-like protein zinc_ribbon_4 PF13717.6 gi|257372978|ref|YP_003175752.1| - 0.1 12.5 3.4 0.99 9.4 3.1 2.1 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_9 PF14369.6 gi|257372978|ref|YP_003175752.1| - 0.14 12.5 1.1 0.49 10.7 0.2 2.1 2 0 0 2 2 2 0 zinc-ribbon zf-IS66 PF13005.7 gi|257372978|ref|YP_003175752.1| - 0.15 12.5 0.8 15 6.1 0.1 2.2 2 0 0 2 2 2 0 zinc-finger binding domain of transposase IS66 zinc_ribbon_2 PF13240.6 gi|257372978|ref|YP_003175752.1| - 0.16 11.7 4.1 0.52 10.1 4.1 1.7 1 1 0 1 1 1 0 zinc-ribbon domain zf-TFIIB PF13453.6 gi|257372978|ref|YP_003175752.1| - 0.51 9.7 2.6 1.2 8.5 2.6 1.6 1 1 0 1 1 1 0 Transcription factor zinc-finger zinc_ribbon_5 PF13719.6 gi|257372978|ref|YP_003175752.1| - 1.2 8.9 4.5 1.5 8.6 0.5 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zf-RING_7 PF02591.15 gi|257372978|ref|YP_003175752.1| - 1.4 9.1 0.1 1.4 9.1 0.1 2.3 2 0 0 2 2 2 0 C4-type zinc ribbon domain zf-LITAF-like PF10601.9 gi|257372978|ref|YP_003175752.1| - 7.6 6.9 6.1 9.4 6.6 2.6 2.7 2 1 0 2 2 2 0 LITAF-like zinc ribbon domain Pkinase PF00069.25 gi|257372979|ref|YP_003175753.1| - 6.1e-31 107.7 0.0 7.8e-31 107.4 0.0 1.1 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|257372979|ref|YP_003175753.1| - 3.4e-24 85.5 0.0 4.4e-24 85.2 0.0 1.0 1 0 0 1 1 1 1 Protein tyrosine kinase Kinase-like PF14531.6 gi|257372979|ref|YP_003175753.1| - 0.099 11.9 0.0 0.13 11.6 0.0 1.1 1 0 0 1 1 1 0 Kinase-like PQQ_3 PF13570.6 gi|257372980|ref|YP_003175754.1| - 1.2e-64 213.4 56.2 1.7e-11 44.2 1.8 9.1 9 0 0 9 9 9 8 PQQ-like domain PQQ_2 PF13360.6 gi|257372980|ref|YP_003175754.1| - 4.5e-54 183.5 32.8 1.4e-23 83.7 7.7 4.0 2 1 2 4 4 4 3 PQQ-like domain PQQ PF01011.21 gi|257372980|ref|YP_003175754.1| - 4.1e-44 146.5 22.3 4.3e-07 29.5 0.1 8.4 8 0 0 8 8 8 7 PQQ enzyme repeat Pkinase PF00069.25 gi|257372980|ref|YP_003175754.1| - 4.2e-25 88.6 0.0 6.3e-25 88.0 0.0 1.2 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|257372980|ref|YP_003175754.1| - 5.5e-13 48.8 0.0 8.7e-13 48.1 0.0 1.3 1 0 0 1 1 1 1 Protein tyrosine kinase AAA_31 PF13614.6 gi|257372981|ref|YP_003175755.1| - 8.7e-22 77.9 0.0 1.2e-21 77.4 0.0 1.1 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|257372981|ref|YP_003175755.1| - 2.5e-16 59.9 0.0 3.6e-16 59.4 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|257372981|ref|YP_003175755.1| - 5.4e-09 35.9 0.1 3.4e-08 33.2 0.1 1.9 1 1 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase MipZ PF09140.11 gi|257372981|ref|YP_003175755.1| - 1e-06 28.3 0.4 6.9e-05 22.3 0.2 2.3 1 1 0 2 2 2 1 ATPase MipZ CBP_BcsQ PF06564.12 gi|257372981|ref|YP_003175755.1| - 2.1e-06 27.4 0.0 3.5e-06 26.7 0.0 1.3 1 0 0 1 1 1 1 Cellulose biosynthesis protein BcsQ CLP1_P PF16575.5 gi|257372981|ref|YP_003175755.1| - 0.00033 20.5 0.0 0.0006 19.7 0.0 1.3 1 0 0 1 1 1 1 mRNA cleavage and polyadenylation factor CLP1 P-loop ArsA_ATPase PF02374.15 gi|257372981|ref|YP_003175755.1| - 0.001 18.4 0.1 0.002 17.4 0.1 1.6 1 1 0 1 1 1 1 Anion-transporting ATPase Fer4_NifH PF00142.18 gi|257372981|ref|YP_003175755.1| - 0.0029 17.1 0.0 0.0074 15.8 0.0 1.7 2 0 0 2 2 2 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family SRP54 PF00448.22 gi|257372981|ref|YP_003175755.1| - 0.0066 16.1 0.0 0.013 15.2 0.0 1.4 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_24 PF13479.6 gi|257372981|ref|YP_003175755.1| - 0.02 14.6 0.0 0.069 12.9 0.0 2.0 2 1 0 2 2 2 0 AAA domain IstB_IS21 PF01695.17 gi|257372981|ref|YP_003175755.1| - 0.026 14.2 0.0 0.048 13.4 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein DUF3567 PF12091.8 gi|257372981|ref|YP_003175755.1| - 0.052 13.7 0.0 0.13 12.4 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF3567) ATP_bind_1 PF03029.17 gi|257372981|ref|YP_003175755.1| - 0.073 12.8 0.0 0.15 11.9 0.0 1.4 1 0 0 1 1 1 0 Conserved hypothetical ATP binding protein AAA_18 PF13238.6 gi|257372981|ref|YP_003175755.1| - 0.085 13.4 0.0 0.2 12.2 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.6 gi|257372981|ref|YP_003175755.1| - 0.097 12.7 0.0 0.31 11.1 0.0 1.8 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.6 gi|257372981|ref|YP_003175755.1| - 0.1 12.2 2.0 0.28 10.7 0.6 2.4 2 1 0 2 2 2 0 AAA domain DUF4177 PF13783.6 gi|257372981|ref|YP_003175755.1| - 0.13 12.6 0.0 0.28 11.5 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4177) MLTD_N PF06474.12 gi|257372983|ref|YP_003175757.1| - 0.96 9.7 4.7 0.21 11.8 0.6 2.2 2 0 0 2 2 2 0 MltD lipid attachment motif Pkinase PF00069.25 gi|257372985|ref|YP_003175759.1| - 2.1e-26 92.8 0.0 3.6e-26 92.1 0.0 1.3 1 0 0 1 1 1 1 Protein kinase domain Pkinase_Tyr PF07714.17 gi|257372985|ref|YP_003175759.1| - 4e-22 78.7 0.0 6.7e-22 78.0 0.0 1.3 1 0 0 1 1 1 1 Protein tyrosine kinase HEAT_2 PF13646.6 gi|257372985|ref|YP_003175759.1| - 2.2e-06 28.0 39.7 0.015 15.7 4.1 7.4 3 2 5 8 8 8 5 HEAT repeats Adaptin_N PF01602.20 gi|257372985|ref|YP_003175759.1| - 6.6e-06 25.0 0.1 0.039 12.5 0.2 2.7 2 1 0 2 2 2 2 Adaptin N terminal region Cnd1 PF12717.7 gi|257372985|ref|YP_003175759.1| - 0.00031 20.8 1.3 0.4 10.7 0.1 3.8 3 1 1 4 4 4 2 non-SMC mitotic condensation complex subunit 1 HEAT PF02985.22 gi|257372985|ref|YP_003175759.1| - 0.0015 18.6 2.7 9.2 6.8 0.1 5.5 4 0 0 4 4 4 1 HEAT repeat RTP1_C1 PF10363.9 gi|257372985|ref|YP_003175759.1| - 0.024 14.8 0.0 8.8 6.6 0.0 3.9 4 1 0 4 4 4 0 Required for nuclear transport of RNA pol II C-terminus 1 EH_Signature PF15611.6 gi|257372985|ref|YP_003175759.1| - 2.3 7.6 9.6 5.4 6.3 7.7 2.5 2 1 0 2 2 2 0 EH_Signature domain HEAT_EZ PF13513.6 gi|257372985|ref|YP_003175759.1| - 3.3 8.3 16.1 7 7.3 0.2 5.7 5 0 0 5 5 5 0 HEAT-like repeat Asp_protease_2 PF13650.6 gi|257372986|ref|YP_003175760.1| - 3.6e-05 24.3 1.3 5.5e-05 23.7 1.3 1.3 1 0 0 1 1 1 1 Aspartyl protease Zn_protease PF05618.11 gi|257372986|ref|YP_003175760.1| - 0.00025 20.9 0.1 0.18 11.7 0.0 2.1 1 1 1 2 2 2 2 Putative ATP-dependant zinc protease gag-asp_proteas PF13975.6 gi|257372986|ref|YP_003175760.1| - 0.0014 19.2 0.7 0.0021 18.6 0.7 1.2 1 0 0 1 1 1 1 gag-polyprotein putative aspartyl protease Microcephalin PF12258.8 gi|257372986|ref|YP_003175760.1| - 0.021 14.1 0.0 0.028 13.7 0.0 1.1 1 0 0 1 1 1 0 Microcephalin protein UvrD-helicase PF00580.21 gi|257372988|ref|YP_003175762.1| - 1.1e-15 58.1 0.0 2e-15 57.2 0.0 1.3 1 1 0 1 1 1 1 UvrD/REP helicase N-terminal domain UvrD_C_2 PF13538.6 gi|257372988|ref|YP_003175762.1| - 5.7e-09 35.7 1.1 0.00011 21.9 1.1 2.9 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain AAA_19 PF13245.6 gi|257372988|ref|YP_003175762.1| - 1.1e-08 35.5 0.0 6.5e-08 33.0 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_30 PF13604.6 gi|257372988|ref|YP_003175762.1| - 6e-08 32.6 1.9 0.00019 21.2 0.2 2.7 2 0 0 2 2 2 2 AAA domain PDDEXK_1 PF12705.7 gi|257372988|ref|YP_003175762.1| - 2.6e-06 27.6 0.1 8e-05 22.7 0.0 2.7 2 0 0 2 2 2 1 PD-(D/E)XK nuclease superfamily UvrD_C PF13361.6 gi|257372988|ref|YP_003175762.1| - 1.4e-05 24.7 0.0 9.1e-05 22.0 0.0 2.0 1 1 0 1 1 1 1 UvrD-like helicase C-terminal domain AAA_22 PF13401.6 gi|257372988|ref|YP_003175762.1| - 0.0012 19.1 0.6 2.4 8.4 0.3 3.2 2 2 0 2 2 2 2 AAA domain Viral_helicase1 PF01443.18 gi|257372988|ref|YP_003175762.1| - 0.27 10.9 1.7 14 5.4 0.0 3.2 3 0 0 3 3 3 0 Viral (Superfamily 1) RNA helicase Peripla_BP_2 PF01497.18 gi|257372989|ref|YP_003175763.1| - 7.3e-14 51.9 0.0 1e-13 51.4 0.0 1.2 1 0 0 1 1 1 1 Periplasmic binding protein PAS_4 PF08448.10 gi|257372990|ref|YP_003175764.1| - 5.8e-55 184.2 22.5 1.4e-15 57.5 0.3 6.6 6 1 0 6 6 5 4 PAS fold PAS PF00989.25 gi|257372990|ref|YP_003175764.1| - 3.1e-44 149.6 5.4 5e-19 68.4 0.0 6.2 5 1 0 5 5 5 5 PAS fold PAS_9 PF13426.7 gi|257372990|ref|YP_003175764.1| - 1.7e-33 115.0 3.1 1.9e-11 44.1 0.0 5.7 5 0 0 5 5 5 5 PAS domain PAS_3 PF08447.12 gi|257372990|ref|YP_003175764.1| - 3.2e-22 78.6 2.6 3.4e-11 43.3 0.1 4.4 4 0 0 4 4 4 2 PAS fold PAS_8 PF13188.7 gi|257372990|ref|YP_003175764.1| - 8.7e-19 67.1 1.7 1.4e-06 28.2 0.0 5.4 5 0 0 5 5 5 3 PAS domain GAF_2 PF13185.6 gi|257372990|ref|YP_003175764.1| - 1.4e-18 67.6 2.0 1.4e-09 38.3 0.5 3.7 2 0 0 2 2 2 2 GAF domain HATPase_c PF02518.26 gi|257372990|ref|YP_003175764.1| - 5e-17 62.4 0.2 1.1e-16 61.3 0.2 1.7 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Response_reg PF00072.24 gi|257372990|ref|YP_003175764.1| - 1.3e-14 54.3 0.0 3.3e-14 53.0 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain GAF_3 PF13492.6 gi|257372990|ref|YP_003175764.1| - 1.3e-14 54.6 0.0 1e-05 25.9 0.0 3.8 4 0 0 4 4 4 2 GAF domain HisKA PF00512.25 gi|257372990|ref|YP_003175764.1| - 1.1e-11 44.5 0.1 1.1e-11 44.5 0.1 3.9 4 0 0 4 4 4 1 His Kinase A (phospho-acceptor) domain GAF PF01590.26 gi|257372990|ref|YP_003175764.1| - 1.1e-08 35.7 0.0 2.8e-07 31.2 0.0 3.0 3 0 0 3 3 3 1 GAF domain PAS_10 PF13596.6 gi|257372990|ref|YP_003175764.1| - 0.0088 16.6 0.0 0.22 12.2 0.0 3.3 4 0 0 4 4 3 1 PAS domain OKR_DC_1_N PF03709.15 gi|257372990|ref|YP_003175764.1| - 0.016 15.4 0.1 0.051 13.9 0.1 1.9 1 0 0 1 1 1 0 Orn/Lys/Arg decarboxylase, N-terminal domain HATPase_c_3 PF13589.6 gi|257372990|ref|YP_003175764.1| - 0.06 13.2 0.0 0.14 12.0 0.0 1.6 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ZnuA PF01297.17 gi|257372992|ref|YP_003175766.1| - 6.5e-41 140.4 0.1 8.1e-41 140.1 0.1 1.0 1 0 0 1 1 1 1 Zinc-uptake complex component A periplasmic ABC_tran PF00005.27 gi|257372993|ref|YP_003175767.1| - 1.5e-30 106.5 0.0 2e-30 106.1 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|257372993|ref|YP_003175767.1| - 1.5e-10 41.4 0.1 0.00028 20.8 0.0 2.2 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system AAA_29 PF13555.6 gi|257372993|ref|YP_003175767.1| - 7.4e-05 22.4 0.0 0.00028 20.6 0.0 1.9 2 0 0 2 2 2 1 P-loop containing region of AAA domain SMC_N PF02463.19 gi|257372993|ref|YP_003175767.1| - 0.00011 21.7 0.0 0.012 15.1 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|257372993|ref|YP_003175767.1| - 0.0016 18.7 0.0 0.12 12.6 0.0 2.2 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.6 gi|257372993|ref|YP_003175767.1| - 0.0029 17.3 0.1 0.0085 15.8 0.1 1.8 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|257372993|ref|YP_003175767.1| - 0.0059 17.0 0.1 0.009 16.4 0.1 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA_15 PF13175.6 gi|257372993|ref|YP_003175767.1| - 0.014 15.1 0.0 0.019 14.7 0.0 1.2 1 0 0 1 1 1 0 AAA ATPase domain MeaB PF03308.16 gi|257372993|ref|YP_003175767.1| - 0.015 14.3 0.1 0.022 13.7 0.1 1.2 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_23 PF13476.6 gi|257372993|ref|YP_003175767.1| - 0.02 15.4 0.0 0.032 14.7 0.0 1.2 1 0 0 1 1 1 0 AAA domain ABC_ATPase PF09818.9 gi|257372993|ref|YP_003175767.1| - 0.021 13.6 0.1 3.6 6.3 0.0 3.0 2 1 0 2 2 2 0 Predicted ATPase of the ABC class SbcCD_C PF13558.6 gi|257372993|ref|YP_003175767.1| - 0.034 14.4 0.6 0.92 9.8 0.6 2.4 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_33 PF13671.6 gi|257372993|ref|YP_003175767.1| - 0.049 13.8 0.0 0.098 12.8 0.0 1.5 1 0 0 1 1 1 0 AAA domain DUF3987 PF13148.6 gi|257372993|ref|YP_003175767.1| - 0.051 12.6 0.0 0.076 12.0 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3987) Spore_IV_A PF09547.10 gi|257372993|ref|YP_003175767.1| - 0.057 12.4 0.0 0.08 11.9 0.0 1.1 1 0 0 1 1 1 0 Stage IV sporulation protein A (spore_IV_A) NTPase_1 PF03266.15 gi|257372993|ref|YP_003175767.1| - 0.097 12.6 0.0 0.57 10.1 0.0 1.9 2 0 0 2 2 2 0 NTPase DUF87 PF01935.17 gi|257372993|ref|YP_003175767.1| - 0.1 12.7 0.0 0.18 11.9 0.0 1.5 1 0 0 1 1 1 0 Helicase HerA, central domain NACHT PF05729.12 gi|257372993|ref|YP_003175767.1| - 0.13 12.2 0.0 0.2 11.6 0.0 1.3 1 0 0 1 1 1 0 NACHT domain MMR_HSR1 PF01926.23 gi|257372993|ref|YP_003175767.1| - 0.14 12.2 0.0 0.27 11.3 0.0 1.4 1 0 0 1 1 1 0 50S ribosome-binding GTPase ABC-3 PF00950.17 gi|257372994|ref|YP_003175768.1| - 5.2e-56 190.0 40.3 6.1e-56 189.8 40.3 1.0 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.18 gi|257372994|ref|YP_003175768.1| - 0.034 13.1 40.3 0.09 11.8 40.3 1.8 1 1 0 1 1 1 0 FecCD transport family DUF2407_C PF13373.6 gi|257372994|ref|YP_003175768.1| - 1.2 9.3 4.8 0.31 11.2 1.1 1.9 2 0 0 2 2 2 0 DUF2407 C-terminal domain SLATT_6 PF18169.1 gi|257372994|ref|YP_003175768.1| - 6.7 6.3 10.5 6.7 6.3 1.1 2.7 3 0 0 3 3 3 0 SMODS and SLOG-associating 2TM effector domain 6 Phage_int_SAM_1 PF02899.17 gi|257372995|ref|YP_003175769.1| - 0.00014 22.0 1.3 0.067 13.5 0.1 3.6 2 1 2 4 4 4 2 Phage integrase, N-terminal SAM-like domain Phage_int_SAM_5 PF13102.6 gi|257372995|ref|YP_003175769.1| - 0.0031 17.8 0.0 0.012 15.9 0.0 1.9 2 0 0 2 2 2 1 Phage integrase SAM-like domain baeRF_family3 PF18845.1 gi|257372995|ref|YP_003175769.1| - 0.06 13.6 0.7 0.43 10.8 0.1 2.2 2 0 0 2 2 2 0 Bacterial archaeo-eukaryotic release factor family 3 Phage_int_SAM_4 PF13495.6 gi|257372995|ref|YP_003175769.1| - 0.15 12.6 0.1 1.4 9.5 0.1 2.2 1 1 1 2 2 2 0 Phage integrase, N-terminal SAM-like domain DDE_Tnp_IS1595 PF12762.7 gi|257372996|ref|YP_003175770.1| - 2.9e-22 79.3 0.0 4.1e-22 78.8 0.0 1.2 1 0 0 1 1 1 1 ISXO2-like transposase domain Zn_Tnp_IS1595 PF12760.7 gi|257372996|ref|YP_003175770.1| - 3.9e-10 39.5 0.9 8e-10 38.5 0.9 1.6 1 0 0 1 1 1 1 Transposase zinc-ribbon domain DUF2089 PF09862.9 gi|257372996|ref|YP_003175770.1| - 5.9e-07 29.5 0.0 1e-06 28.8 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF2089) Zn_Tnp_IS1 PF03811.13 gi|257372996|ref|YP_003175770.1| - 1.5e-05 24.6 4.0 3.8e-05 23.3 4.0 1.7 1 0 0 1 1 1 1 InsA N-terminal domain TackOD1 PF18551.1 gi|257372996|ref|YP_003175770.1| - 0.007 16.1 0.2 0.011 15.4 0.2 1.2 1 0 0 1 1 1 1 Thaumarchaeal output domain 1 Zn-ribbon_8 PF09723.10 gi|257372996|ref|YP_003175770.1| - 0.017 15.2 0.5 3.1 8.0 0.1 2.5 2 0 0 2 2 2 0 Zinc ribbon domain HTH_23 PF13384.6 gi|257372996|ref|YP_003175770.1| - 0.023 14.5 0.0 0.082 12.7 0.0 1.9 1 0 0 1 1 1 0 Homeodomain-like domain HTH_29 PF13551.6 gi|257372996|ref|YP_003175770.1| - 0.023 14.7 0.1 0.094 12.7 0.1 2.0 1 0 0 1 1 1 0 Winged helix-turn helix ADK_lid PF05191.14 gi|257372996|ref|YP_003175770.1| - 0.041 13.9 2.6 0.041 13.9 0.1 2.1 2 0 0 2 2 2 0 Adenylate kinase, active site lid GerE PF00196.19 gi|257372996|ref|YP_003175770.1| - 0.041 13.4 0.0 0.085 12.4 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family zf-C4_Topoisom PF01396.19 gi|257372996|ref|YP_003175770.1| - 0.047 13.5 1.3 0.094 12.5 1.3 1.5 1 0 0 1 1 1 0 Topoisomerase DNA binding C4 zinc finger Sigma70_r4_2 PF08281.12 gi|257372996|ref|YP_003175770.1| - 0.099 12.3 0.0 0.3 10.8 0.0 1.8 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_11 PF08279.12 gi|257372996|ref|YP_003175770.1| - 0.1 12.6 0.0 0.2 11.6 0.0 1.5 1 0 0 1 1 1 0 HTH domain zinc-ribbons_6 PF07191.12 gi|257372996|ref|YP_003175770.1| - 0.11 12.4 0.3 0.2 11.6 0.3 1.4 1 0 0 1 1 1 0 zinc-ribbons Lar_restr_allev PF14354.6 gi|257372996|ref|YP_003175770.1| - 0.12 12.8 0.1 0.26 11.7 0.1 1.5 1 0 0 1 1 1 0 Restriction alleviation protein Lar zf-Dof PF02701.15 gi|257372996|ref|YP_003175770.1| - 0.18 12.0 3.5 0.37 11.0 3.5 1.5 1 0 0 1 1 1 0 Dof domain, zinc finger zf-C2H2_4 PF13894.6 gi|257372996|ref|YP_003175770.1| - 0.46 11.5 3.6 1.1 10.3 0.2 3.1 3 0 0 3 3 3 0 C2H2-type zinc finger zf-ISL3 PF14690.6 gi|257372996|ref|YP_003175770.1| - 0.84 10.4 5.8 7.6 7.3 0.2 2.9 1 1 1 2 2 2 0 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 Zn_ribbon_recom PF13408.6 gi|257372996|ref|YP_003175770.1| - 2 9.0 6.4 2.3 8.8 4.8 2.0 1 1 1 2 2 2 0 Recombinase zinc beta ribbon domain zf-C2HC_2 PF13913.6 gi|257372996|ref|YP_003175770.1| - 4.9 7.2 8.0 0.23 11.4 1.4 2.1 2 0 0 2 2 2 0 zinc-finger of a C2HC-type AAA_assoc_2 PF16193.5 gi|257372997|ref|YP_003175771.1| - 0.087 13.2 0.7 0.41 11.0 0.7 2.1 1 0 0 1 1 1 0 AAA C-terminal domain CBM_4_9 PF02018.17 gi|257372997|ref|YP_003175771.1| - 1.4 9.1 6.7 0.8 10.0 0.1 3.7 3 0 0 3 3 3 0 Carbohydrate binding domain Metal_resist PF13801.6 gi|257372998|ref|YP_003175772.1| - 0.029 14.6 0.1 0.044 14.0 0.1 1.3 1 0 0 1 1 1 0 Heavy-metal resistance DDE_Tnp_1 PF01609.21 gi|257372999|ref|YP_003175773.1| - 6.8e-14 52.0 0.8 2.8e-13 50.0 0.8 1.9 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.6 gi|257372999|ref|YP_003175773.1| - 0.00078 19.8 0.0 0.0015 18.8 0.0 1.5 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 gi|257372999|ref|YP_003175773.1| - 0.062 13.3 0.0 0.09 12.8 0.0 1.2 1 0 0 1 1 1 0 Transposase DDE domain SHOCT PF09851.9 gi|257373000|ref|YP_003175774.1| - 2.7e-07 30.1 0.1 4.1e-07 29.5 0.1 1.3 1 0 0 1 1 1 1 Short C-terminal domain DUF1707 PF08044.11 gi|257373000|ref|YP_003175774.1| - 1.3e-05 25.1 3.6 2.6e-05 24.2 3.3 1.6 1 1 0 1 1 1 1 Domain of unknown function (DUF1707) GvpG PF05120.12 gi|257373000|ref|YP_003175774.1| - 0.037 14.0 1.1 0.097 12.7 1.1 1.7 1 1 0 1 1 1 0 Gas vesicle protein G DUF302 PF03625.14 gi|257373001|ref|YP_003175775.1| - 1.4e-17 63.3 0.0 2.4e-17 62.6 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function DUF302 Methyltransf_11 PF08241.12 gi|257373002|ref|YP_003175776.1| - 2.8e-17 63.2 0.1 4.3e-17 62.5 0.1 1.3 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_25 PF13649.6 gi|257373002|ref|YP_003175776.1| - 7.9e-14 52.1 0.1 1.5e-13 51.2 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain Methyltransf_31 PF13847.6 gi|257373002|ref|YP_003175776.1| - 1.8e-07 31.1 0.0 2.2e-07 30.8 0.0 1.2 1 0 0 1 1 1 1 Methyltransferase domain Ubie_methyltran PF01209.18 gi|257373002|ref|YP_003175776.1| - 7.2e-05 22.2 0.0 0.0001 21.7 0.0 1.2 1 0 0 1 1 1 1 ubiE/COQ5 methyltransferase family Methyltransf_23 PF13489.6 gi|257373002|ref|YP_003175776.1| - 0.00014 21.8 0.0 0.00025 20.9 0.0 1.4 1 1 0 1 1 1 1 Methyltransferase domain Methyltransf_8 PF05148.15 gi|257373002|ref|YP_003175776.1| - 0.0024 17.8 0.0 0.0053 16.6 0.0 1.7 1 1 0 1 1 1 1 Hypothetical methyltransferase Methyltransf_12 PF08242.12 gi|257373002|ref|YP_003175776.1| - 0.0062 17.3 0.1 0.012 16.3 0.1 1.5 1 0 0 1 1 1 1 Methyltransferase domain DREV PF05219.12 gi|257373002|ref|YP_003175776.1| - 0.081 12.0 0.0 0.11 11.6 0.0 1.2 1 0 0 1 1 1 0 DREV methyltransferase Methyltransf_2 PF00891.18 gi|257373002|ref|YP_003175776.1| - 0.14 11.4 0.1 0.31 10.3 0.1 1.6 1 1 0 1 1 1 0 O-methyltransferase domain IucA_IucC PF04183.12 gi|257373003|ref|YP_003175777.1| - 9.6e-70 234.8 0.0 1.6e-69 234.1 0.0 1.4 1 0 0 1 1 1 1 IucA / IucC family FhuF PF06276.12 gi|257373003|ref|YP_003175777.1| - 8.6e-38 130.3 0.0 1.6e-37 129.5 0.0 1.5 1 0 0 1 1 1 1 Ferric iron reductase FhuF-like transporter Aminotran_3 PF00202.21 gi|257373004|ref|YP_003175778.1| - 2.3e-88 296.6 0.0 2.7e-88 296.4 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Prim-Pol PF09250.11 gi|257373004|ref|YP_003175778.1| - 0.032 14.6 0.4 0.18 12.1 0.1 2.2 2 0 0 2 2 2 0 Bifunctional DNA primase/polymerase, N-terminal Aminotran_1_2 PF00155.21 gi|257373004|ref|YP_003175778.1| - 0.045 12.9 0.0 0.2 10.8 0.0 1.9 2 0 0 2 2 2 0 Aminotransferase class I and II Pyridoxal_deC PF00282.19 gi|257373005|ref|YP_003175779.1| - 3.1e-54 184.1 0.0 3.9e-54 183.8 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Aminotran_5 PF00266.19 gi|257373005|ref|YP_003175779.1| - 0.0047 15.9 0.0 0.011 14.7 0.0 1.5 2 0 0 2 2 2 1 Aminotransferase class-V IucA_IucC PF04183.12 gi|257373006|ref|YP_003175780.1| - 2.5e-58 197.5 0.0 3.4e-58 197.0 0.0 1.2 1 0 0 1 1 1 1 IucA / IucC family FhuF PF06276.12 gi|257373006|ref|YP_003175780.1| - 1.2e-34 120.0 0.2 2.1e-34 119.3 0.2 1.4 1 0 0 1 1 1 1 Ferric iron reductase FhuF-like transporter Acetyltransf_8 PF13523.6 gi|257373007|ref|YP_003175781.1| - 2.1e-45 154.0 0.2 2.6e-45 153.7 0.2 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|257373007|ref|YP_003175781.1| - 5.8e-09 36.7 0.0 1.2e-08 35.8 0.0 1.5 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_1 PF00583.25 gi|257373007|ref|YP_003175781.1| - 0.0043 17.3 0.0 0.0058 16.9 0.0 1.3 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family FR47 PF08445.10 gi|257373007|ref|YP_003175781.1| - 0.035 14.1 0.0 0.089 12.8 0.0 1.7 2 0 0 2 2 2 0 FR47-like protein PG_binding_2 PF08823.11 gi|257373007|ref|YP_003175781.1| - 0.08 13.3 0.0 0.14 12.4 0.0 1.4 1 0 0 1 1 1 0 Putative peptidoglycan binding domain K_oxygenase PF13434.6 gi|257373008|ref|YP_003175782.1| - 1.9e-109 365.9 0.0 2.3e-109 365.7 0.0 1.0 1 0 0 1 1 1 1 L-lysine 6-monooxygenase (NADPH-requiring) Pyr_redox_2 PF07992.14 gi|257373008|ref|YP_003175782.1| - 3e-07 30.0 0.0 0.0007 18.9 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_9 PF13454.6 gi|257373008|ref|YP_003175782.1| - 0.00084 19.3 0.4 2.5 8.1 0.0 3.2 3 0 0 3 3 3 3 FAD-NAD(P)-binding IucA_IucC PF04183.12 gi|257373009|ref|YP_003175783.1| - 1.7e-56 191.5 0.0 2.6e-56 190.8 0.0 1.3 1 0 0 1 1 1 1 IucA / IucC family FhuF PF06276.12 gi|257373009|ref|YP_003175783.1| - 3.2e-33 115.5 0.1 6.2e-33 114.5 0.1 1.5 1 0 0 1 1 1 1 Ferric iron reductase FhuF-like transporter Polysacc_deac_1 PF01522.21 gi|257373010|ref|YP_003175784.1| - 1e-22 80.3 0.0 1.6e-22 79.7 0.0 1.3 1 0 0 1 1 1 1 Polysaccharide deacetylase DUF2334 PF10096.9 gi|257373010|ref|YP_003175784.1| - 0.0086 15.8 0.0 0.012 15.3 0.0 1.3 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2334) MatE PF01554.18 gi|257373012|ref|YP_003175786.1| - 7.4e-60 201.3 31.5 1.5e-34 119.0 14.8 2.2 2 0 0 2 2 2 2 MatE Polysacc_synt_C PF14667.6 gi|257373012|ref|YP_003175786.1| - 1.1e-05 25.6 20.8 1.1e-05 25.6 20.8 4.6 3 2 0 3 3 3 2 Polysaccharide biosynthesis C-terminal domain Peripla_BP_2 PF01497.18 gi|257373013|ref|YP_003175787.1| - 4.6e-24 85.3 0.0 8.1e-24 84.5 0.0 1.4 1 1 0 1 1 1 1 Periplasmic binding protein Osmo_CC PF08946.10 gi|257373013|ref|YP_003175787.1| - 0.073 13.3 0.0 0.19 12.0 0.0 1.7 1 0 0 1 1 1 0 Osmosensory transporter coiled coil Com_YlbF PF06133.11 gi|257373015|ref|YP_003175789.1| - 1.4e-17 64.2 15.9 1.6e-17 64.0 15.9 1.1 1 0 0 1 1 1 1 Control of competence regulator ComK, YlbF/YmcA OmpH PF03938.14 gi|257373015|ref|YP_003175789.1| - 0.4 11.0 14.8 0.58 10.5 14.8 1.3 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) V_ATPase_I PF01496.19 gi|257373015|ref|YP_003175789.1| - 1.4 6.7 6.8 1.5 6.6 6.8 1.0 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Complex1_LYR_2 PF13233.6 gi|257373015|ref|YP_003175789.1| - 1.8 9.4 9.2 16 6.4 9.2 2.1 1 1 0 1 1 1 0 Complex1_LYR-like DivIC PF04977.15 gi|257373015|ref|YP_003175789.1| - 3 7.7 14.1 40 4.1 12.8 2.8 1 1 1 2 2 2 0 Septum formation initiator FUSC PF04632.12 gi|257373015|ref|YP_003175789.1| - 9.7 4.6 6.6 9.9 4.6 6.6 1.0 1 0 0 1 1 1 0 Fusaric acid resistance protein family ArsA_ATPase PF02374.15 gi|257373016|ref|YP_003175790.1| - 8e-161 534.3 0.0 1.6e-87 293.5 0.0 4.0 2 2 1 3 3 3 3 Anion-transporting ATPase AAA_31 PF13614.6 gi|257373016|ref|YP_003175790.1| - 2.5e-22 79.6 0.0 2.1e-10 40.8 0.0 2.4 2 0 0 2 2 2 2 AAA domain CbiA PF01656.23 gi|257373016|ref|YP_003175790.1| - 3.4e-21 75.6 0.0 8.3e-10 38.8 0.0 3.3 2 1 0 2 2 2 2 CobQ/CobB/MinD/ParA nucleotide binding domain ParA PF10609.9 gi|257373016|ref|YP_003175790.1| - 1.2e-13 51.1 1.0 6.1e-06 25.9 0.2 3.3 2 1 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase Fer4_NifH PF00142.18 gi|257373016|ref|YP_003175790.1| - 8.7e-09 35.2 0.0 0.002 17.6 0.0 2.4 2 0 0 2 2 2 2 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_16 PF13191.6 gi|257373016|ref|YP_003175790.1| - 8.4e-08 32.8 0.0 0.0022 18.4 0.0 2.4 2 0 0 2 2 2 2 AAA ATPase domain NB-ARC PF00931.22 gi|257373016|ref|YP_003175790.1| - 2.1e-07 30.4 0.0 0.00083 18.6 0.0 2.3 2 0 0 2 2 2 2 NB-ARC domain MeaB PF03308.16 gi|257373016|ref|YP_003175790.1| - 4.1e-07 29.3 0.1 0.00042 19.4 0.0 3.1 3 0 0 3 3 3 1 Methylmalonyl Co-A mutase-associated GTPase MeaB SRP54 PF00448.22 gi|257373016|ref|YP_003175790.1| - 3.3e-06 26.9 4.5 1.2 8.7 0.3 4.3 4 0 0 4 4 4 2 SRP54-type protein, GTPase domain APS_kinase PF01583.20 gi|257373016|ref|YP_003175790.1| - 5.5e-06 26.4 0.1 0.019 14.8 0.1 2.4 2 0 0 2 2 2 2 Adenylylsulphate kinase CBP_BcsQ PF06564.12 gi|257373016|ref|YP_003175790.1| - 5.5e-06 26.0 0.0 0.0055 16.2 0.0 2.4 2 1 0 2 2 2 2 Cellulose biosynthesis protein BcsQ PhoH PF02562.16 gi|257373016|ref|YP_003175790.1| - 1.1e-05 24.9 0.3 0.024 14.1 0.1 2.8 2 2 0 2 2 2 2 PhoH-like protein ATPase PF06745.13 gi|257373016|ref|YP_003175790.1| - 2.9e-05 23.5 0.2 0.073 12.4 0.0 2.4 2 0 0 2 2 2 2 KaiC NTPase_1 PF03266.15 gi|257373016|ref|YP_003175790.1| - 0.00015 21.7 0.5 0.14 12.1 0.2 3.2 3 1 0 3 3 3 1 NTPase AAA_24 PF13479.6 gi|257373016|ref|YP_003175790.1| - 0.0002 21.2 4.6 0.00072 19.3 0.1 3.3 2 2 0 2 2 2 1 AAA domain RsgA_GTPase PF03193.16 gi|257373016|ref|YP_003175790.1| - 0.0002 21.3 0.1 0.24 11.3 0.0 2.5 2 0 0 2 2 2 2 RsgA GTPase AAA_25 PF13481.6 gi|257373016|ref|YP_003175790.1| - 0.00023 20.8 11.6 0.022 14.3 0.0 3.8 3 1 0 3 3 2 1 AAA domain AAA_29 PF13555.6 gi|257373016|ref|YP_003175790.1| - 0.00045 19.9 0.1 1.2 9.0 0.0 2.5 2 0 0 2 2 2 2 P-loop containing region of AAA domain IstB_IS21 PF01695.17 gi|257373016|ref|YP_003175790.1| - 0.00048 19.9 0.0 0.54 10.0 0.0 2.3 2 0 0 2 2 2 2 IstB-like ATP binding protein RNA_helicase PF00910.22 gi|257373016|ref|YP_003175790.1| - 0.00068 20.0 0.0 1.5 9.2 0.0 2.6 2 0 0 2 2 2 2 RNA helicase ATP_bind_1 PF03029.17 gi|257373016|ref|YP_003175790.1| - 0.00073 19.4 0.1 0.34 10.7 0.1 2.5 2 0 0 2 2 2 1 Conserved hypothetical ATP binding protein AAA_30 PF13604.6 gi|257373016|ref|YP_003175790.1| - 0.0021 17.8 2.4 1.1 8.9 0.9 3.2 3 1 1 4 4 4 1 AAA domain Helicase_RecD PF05127.14 gi|257373016|ref|YP_003175790.1| - 0.0066 16.3 0.0 1.2 8.9 0.0 2.3 2 0 0 2 2 2 1 Helicase PIF1 PF05970.14 gi|257373016|ref|YP_003175790.1| - 0.0074 15.5 0.0 0.73 8.9 0.0 2.2 2 0 0 2 2 2 1 PIF1-like helicase MipZ PF09140.11 gi|257373016|ref|YP_003175790.1| - 0.0078 15.5 7.6 0.84 8.9 0.2 4.0 4 0 0 4 4 4 1 ATPase MipZ AAA PF00004.29 gi|257373016|ref|YP_003175790.1| - 0.0084 16.5 0.2 5.2 7.5 0.0 2.8 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 gi|257373016|ref|YP_003175790.1| - 0.011 16.2 0.4 1.9 9.0 0.1 2.9 2 1 0 2 2 2 0 AAA domain AAA_33 PF13671.6 gi|257373016|ref|YP_003175790.1| - 0.014 15.5 0.0 2.1 8.5 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.6 gi|257373016|ref|YP_003175790.1| - 0.015 15.6 0.0 3.6 7.9 0.0 3.0 2 1 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|257373016|ref|YP_003175790.1| - 0.019 15.5 0.0 4.3 7.9 0.0 2.5 2 0 0 2 2 2 0 ABC transporter AAA_7 PF12775.7 gi|257373016|ref|YP_003175790.1| - 0.022 14.3 0.0 3.1 7.3 0.0 2.4 2 0 0 2 2 2 0 P-loop containing dynein motor region RuvB_N PF05496.12 gi|257373016|ref|YP_003175790.1| - 0.041 13.6 0.0 5.2 6.8 0.0 2.5 2 0 0 2 2 2 0 Holliday junction DNA helicase RuvB P-loop domain Thymidylate_kin PF02223.17 gi|257373016|ref|YP_003175790.1| - 0.044 13.5 0.1 5.4 6.7 0.1 2.6 2 0 0 2 2 2 0 Thymidylate kinase AAA_5 PF07728.14 gi|257373016|ref|YP_003175790.1| - 0.047 13.7 0.1 3 7.8 0.0 2.9 2 2 0 2 2 2 0 AAA domain (dynein-related subfamily) T2SSE PF00437.20 gi|257373016|ref|YP_003175790.1| - 0.047 12.7 0.1 2.4 7.2 0.0 2.2 2 0 0 2 2 2 0 Type II/IV secretion system protein NACHT PF05729.12 gi|257373016|ref|YP_003175790.1| - 0.083 12.8 0.4 4.5 7.2 0.1 2.4 2 0 0 2 2 2 0 NACHT domain Zeta_toxin PF06414.12 gi|257373016|ref|YP_003175790.1| - 0.12 11.6 0.1 7.6 5.8 0.0 2.7 3 0 0 3 3 2 0 Zeta toxin VirC1 PF07015.11 gi|257373016|ref|YP_003175790.1| - 0.16 11.3 1.4 24 4.1 0.1 3.1 3 0 0 3 3 3 0 VirC1 protein CLP1_P PF16575.5 gi|257373016|ref|YP_003175790.1| - 0.2 11.4 0.1 5.6 6.7 0.0 2.3 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop CHIP_TPR_N PF18391.1 gi|257373016|ref|YP_003175790.1| - 6.2 7.7 6.5 2.1 9.2 2.4 2.2 2 0 0 2 2 2 0 CHIP N-terminal tetratricopeptide repeat domain ArsD PF06953.11 gi|257373017|ref|YP_003175791.1| - 1.2e-29 103.2 0.0 1.3e-29 103.1 0.0 1.0 1 0 0 1 1 1 1 Arsenical resistance operon trans-acting repressor ArsD DpaA_N PF16924.5 gi|257373017|ref|YP_003175791.1| - 0.12 12.5 0.0 0.14 12.2 0.0 1.2 1 0 0 1 1 1 0 Dipicolinate synthase subunit A N-terminal domain HTH_20 PF12840.7 gi|257373018|ref|YP_003175792.1| - 3.3e-12 46.3 0.2 1.1e-11 44.6 0.2 1.8 2 0 0 2 2 2 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|257373018|ref|YP_003175792.1| - 6.5e-11 41.9 0.0 1.3e-10 41.0 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR PF01047.22 gi|257373018|ref|YP_003175792.1| - 9.8e-05 22.2 0.0 0.00016 21.6 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|257373018|ref|YP_003175792.1| - 0.00064 20.2 0.0 0.0012 19.2 0.0 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|257373018|ref|YP_003175792.1| - 0.00091 19.1 0.1 0.0018 18.2 0.1 1.6 1 1 0 1 1 1 1 MarR family TrmB PF01978.19 gi|257373018|ref|YP_003175792.1| - 0.0014 18.4 0.0 0.0032 17.3 0.0 1.7 1 1 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB DUF4423 PF14394.6 gi|257373018|ref|YP_003175792.1| - 0.0014 18.3 0.0 0.002 17.9 0.0 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4423) GntR PF00392.21 gi|257373018|ref|YP_003175792.1| - 0.0026 17.4 0.0 0.0042 16.7 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_34 PF13601.6 gi|257373018|ref|YP_003175792.1| - 0.0035 17.5 0.0 0.0054 16.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain PaaX PF07848.12 gi|257373018|ref|YP_003175792.1| - 0.011 15.9 0.0 0.018 15.3 0.0 1.3 1 0 0 1 1 1 0 PaaX-like protein HTH_Crp_2 PF13545.6 gi|257373018|ref|YP_003175792.1| - 0.012 15.6 0.1 0.042 13.8 0.1 2.2 1 1 0 1 1 1 0 Crp-like helix-turn-helix domain RP-C PF03428.13 gi|257373018|ref|YP_003175792.1| - 0.022 14.4 0.2 0.048 13.3 0.0 1.6 2 0 0 2 2 2 0 Replication protein C N-terminal domain Cdc6_C PF09079.11 gi|257373018|ref|YP_003175792.1| - 0.038 14.0 0.1 0.087 12.8 0.0 1.7 2 0 0 2 2 2 0 CDC6, C terminal winged helix domain DUF2250 PF10007.9 gi|257373018|ref|YP_003175792.1| - 0.048 13.8 0.0 0.081 13.0 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Penicillinase_R PF03965.16 gi|257373018|ref|YP_003175792.1| - 0.067 13.5 0.0 0.11 12.9 0.0 1.4 1 0 0 1 1 1 0 Penicillinase repressor PAX PF00292.18 gi|257373018|ref|YP_003175792.1| - 0.086 12.8 0.0 0.12 12.3 0.0 1.2 1 0 0 1 1 1 0 'Paired box' domain DUF480 PF04337.12 gi|257373018|ref|YP_003175792.1| - 0.11 12.6 0.0 0.22 11.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF480 Imm49 PF15575.6 gi|257373020|ref|YP_003175794.1| - 0.00051 19.9 0.0 0.00055 19.8 0.0 1.1 1 0 0 1 1 1 1 Immunity protein 49 Ribonuc_red_lgC PF02867.15 gi|257373021|ref|YP_003175795.1| - 1.5e-88 297.6 0.1 7.9e-33 113.8 0.1 3.0 1 1 2 3 3 3 3 Ribonucleotide reductase, barrel domain Ribonuc_red_lgN PF00317.21 gi|257373021|ref|YP_003175795.1| - 0.00097 19.1 0.0 0.0032 17.4 0.0 1.9 1 0 0 1 1 1 1 Ribonucleotide reductase, all-alpha domain Ribonuc_red_sm PF00268.21 gi|257373022|ref|YP_003175796.1| - 4e-49 167.6 2.9 4e-49 167.6 2.9 1.9 1 1 1 2 2 2 1 Ribonucleotide reductase, small chain DUF656 PF04920.12 gi|257373022|ref|YP_003175796.1| - 0.13 12.2 0.0 0.35 10.8 0.0 1.6 2 0 0 2 2 2 0 Family of unknown function (DUF656) ATP-cone PF03477.16 gi|257373023|ref|YP_003175797.1| - 2.8e-17 63.0 0.2 3.7e-17 62.7 0.2 1.2 1 0 0 1 1 1 1 ATP cone domain Zn_Tnp_IS1595 PF12760.7 gi|257373023|ref|YP_003175797.1| - 0.00048 20.0 1.7 0.00071 19.5 1.7 1.3 1 0 0 1 1 1 1 Transposase zinc-ribbon domain COMPASS-Shg1 PF05205.12 gi|257373023|ref|YP_003175797.1| - 0.039 14.7 0.1 0.094 13.4 0.1 1.6 1 1 0 1 1 1 0 COMPASS (Complex proteins associated with Set1p) component shg1 zf-ZPR1 PF03367.13 gi|257373023|ref|YP_003175797.1| - 0.039 13.8 2.1 0.15 11.9 2.1 2.0 1 1 0 1 1 1 0 ZPR1 zinc-finger domain Ogr_Delta PF04606.12 gi|257373023|ref|YP_003175797.1| - 0.054 13.5 2.6 0.11 12.5 2.6 1.5 1 0 0 1 1 1 0 Ogr/Delta-like zinc finger AzlD PF05437.12 gi|257373024|ref|YP_003175798.1| - 4.6e-17 62.0 9.3 5.2e-17 61.8 9.3 1.0 1 0 0 1 1 1 1 Branched-chain amino acid transport protein (AzlD) PsbX PF06596.11 gi|257373024|ref|YP_003175798.1| - 1.9 8.5 0.1 1.9 8.5 0.1 3.9 5 0 0 5 5 5 0 Photosystem II reaction centre X protein (PsbX) DUF4229 PF14012.6 gi|257373025|ref|YP_003175799.1| - 2.2 8.4 10.5 0.58 10.3 5.6 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF4229) Bys1 PF04681.12 gi|257373027|ref|YP_003175801.1| - 0.091 12.7 0.0 0.13 12.2 0.0 1.2 1 0 0 1 1 1 0 Blastomyces yeast-phase-specific protein AbiEi_1 PF09407.10 gi|257373027|ref|YP_003175801.1| - 0.14 12.5 0.1 0.26 11.6 0.1 1.4 1 0 0 1 1 1 0 AbiEi antitoxin C-terminal domain EF-hand_6 PF13405.6 gi|257373032|ref|YP_003175806.1| - 0.042 13.8 7.3 4.4 7.5 0.2 4.5 4 0 0 4 4 4 0 EF-hand domain EF-hand_1 PF00036.32 gi|257373032|ref|YP_003175806.1| - 0.78 9.4 11.9 0.61 9.8 0.1 4.0 5 0 0 5 5 5 0 EF hand EF-hand_7 PF13499.6 gi|257373032|ref|YP_003175806.1| - 1.2 9.6 3.8 8.4 6.9 0.4 3.2 3 1 0 3 3 3 0 EF-hand domain pair Binary_toxB PF03495.14 gi|257373033|ref|YP_003175807.1| - 0.016 15.4 18.4 1.2 9.4 0.2 5.1 4 1 0 4 4 4 0 Clostridial binary toxin B/anthrax toxin PA Ca-binding domain HTH_20 PF12840.7 gi|257373035|ref|YP_003175809.1| - 8.5e-07 28.9 0.1 1.4e-06 28.3 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.10 gi|257373035|ref|YP_003175809.1| - 0.015 15.1 0.1 0.023 14.5 0.1 1.3 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_24 PF13412.6 gi|257373035|ref|YP_003175809.1| - 0.018 14.6 0.0 0.032 13.8 0.0 1.6 1 1 0 1 1 1 0 Winged helix-turn-helix DNA-binding DUF5100 PF17029.5 gi|257373035|ref|YP_003175809.1| - 0.02 14.7 0.0 0.026 14.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5100) TrmB PF01978.19 gi|257373035|ref|YP_003175809.1| - 0.023 14.6 0.0 0.033 14.1 0.0 1.2 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB Jagunal PF07086.12 gi|257373036|ref|YP_003175810.1| - 0.06 13.4 0.7 0.16 12.0 0.7 1.8 1 1 0 1 1 1 0 Jagunal, ER re-organisation during oogenesis DUF3681 PF12442.8 gi|257373036|ref|YP_003175810.1| - 0.39 11.2 10.0 0.18 12.3 1.9 2.1 1 1 1 2 2 2 0 Protein of unknown function (DUF3681) DUF1772 PF08592.11 gi|257373036|ref|YP_003175810.1| - 0.59 10.4 4.4 0.58 10.5 3.6 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF1772) SPC12 PF06645.13 gi|257373036|ref|YP_003175810.1| - 0.63 10.2 0.0 0.63 10.2 0.0 2.6 1 1 2 3 3 3 0 Microsomal signal peptidase 12 kDa subunit (SPC12) DHHC PF01529.20 gi|257373036|ref|YP_003175810.1| - 0.78 9.8 2.5 1.1 9.3 2.5 1.4 1 1 0 1 1 1 0 DHHC palmitoyltransferase DUF4133 PF13571.6 gi|257373036|ref|YP_003175810.1| - 9.6 6.6 14.8 1.2 9.5 3.1 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4133) DUF5326 PF17260.2 gi|257373037|ref|YP_003175811.1| - 0.027 14.6 4.6 0.027 14.6 4.6 1.7 2 0 0 2 2 2 0 Family of unknown function (DUF5326) Phage_holin_3_6 PF07332.11 gi|257373037|ref|YP_003175811.1| - 4.2 7.5 13.0 4.9 7.2 13.0 1.1 1 0 0 1 1 1 0 Putative Actinobacterial Holin-X, holin superfamily III DUF4013 PF13197.6 gi|257373038|ref|YP_003175812.1| - 0.004 17.0 20.9 0.004 17.0 20.9 2.6 1 1 2 3 3 3 2 Protein of unknown function (DUF4013) DUF624 PF04854.14 gi|257373038|ref|YP_003175812.1| - 0.31 11.2 0.1 0.31 11.2 0.1 3.2 3 2 0 3 3 3 0 Protein of unknown function, DUF624 FAD_binding_7 PF03441.14 gi|257373039|ref|YP_003175813.1| - 1.5e-59 200.9 0.2 2.2e-59 200.3 0.2 1.2 1 0 0 1 1 1 1 FAD binding domain of DNA photolyase DNA_photolyase PF00875.18 gi|257373039|ref|YP_003175813.1| - 7.8e-21 74.8 0.1 4.3e-20 72.4 0.1 2.0 2 0 0 2 2 2 1 DNA photolyase RTP1_C2 PF10304.9 gi|257373039|ref|YP_003175813.1| - 0.046 13.4 0.1 3.6 7.4 0.1 2.6 2 0 0 2 2 2 0 Required for nuclear transport of RNA pol II C-terminus 2 ABM PF03992.16 gi|257373039|ref|YP_003175813.1| - 0.055 13.6 0.0 4.6 7.4 0.0 2.6 2 0 0 2 2 2 0 Antibiotic biosynthesis monooxygenase GNAT_like PF18407.1 gi|257373039|ref|YP_003175813.1| - 0.21 12.0 7.7 0.042 14.2 2.5 2.6 3 0 0 3 3 3 0 GCN5-related N-acetyltransferase like domain DUF5383 PF17355.2 gi|257373040|ref|YP_003175814.1| - 0.23 11.8 0.7 0.27 11.6 0.7 1.1 1 0 0 1 1 1 0 Family of unknown function (DUF5383) HTH_10 PF04967.12 gi|257373041|ref|YP_003175815.1| - 2.3e-13 49.7 0.1 3.6e-13 49.1 0.1 1.3 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4 PF04545.16 gi|257373041|ref|YP_003175815.1| - 0.00014 21.3 1.3 0.00033 20.1 1.3 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_20 PF12840.7 gi|257373041|ref|YP_003175815.1| - 0.0025 17.8 0.3 0.0085 16.1 0.3 2.0 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4_2 PF08281.12 gi|257373041|ref|YP_003175815.1| - 0.0086 15.7 1.6 0.19 11.4 1.6 2.4 1 1 0 1 1 1 1 Sigma-70, region 4 HTH_30 PF13556.6 gi|257373041|ref|YP_003175815.1| - 0.028 14.2 0.2 0.075 12.8 0.0 1.7 2 0 0 2 2 2 0 PucR C-terminal helix-turn-helix domain MarR_2 PF12802.7 gi|257373041|ref|YP_003175815.1| - 0.1 12.5 1.5 0.79 9.6 1.5 2.3 1 1 0 1 1 1 0 MarR family HTH_IclR PF09339.10 gi|257373041|ref|YP_003175815.1| - 0.15 11.9 0.6 0.47 10.3 0.1 2.1 2 0 0 2 2 2 0 IclR helix-turn-helix domain COX1 PF00115.20 gi|257373042|ref|YP_003175816.1| - 1.4e-87 294.4 51.2 1.4e-87 294.4 51.2 1.9 1 1 1 2 2 2 1 Cytochrome C and Quinol oxidase polypeptide I COX2 PF00116.20 gi|257373043|ref|YP_003175817.1| - 5.6e-09 35.9 0.0 8.4e-09 35.4 0.0 1.3 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, periplasmic domain Cupredoxin_1 PF13473.6 gi|257373043|ref|YP_003175817.1| - 0.032 14.3 0.0 0.044 13.9 0.0 1.3 1 0 0 1 1 1 0 Cupredoxin-like domain UCR_Fe-S_N PF10399.9 gi|257373043|ref|YP_003175817.1| - 2.5 7.5 4.4 5.3 6.5 4.4 1.5 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal E1-E2_ATPase PF00122.20 gi|257373045|ref|YP_003175819.1| - 4.7e-40 137.0 3.9 4.7e-40 137.0 3.9 1.8 2 0 0 2 2 2 1 E1-E2 ATPase Hydrolase PF00702.26 gi|257373045|ref|YP_003175819.1| - 6e-32 111.6 4.2 6e-32 111.6 4.2 1.7 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HMA PF00403.26 gi|257373045|ref|YP_003175819.1| - 7.7e-09 35.9 0.0 1.1e-07 32.2 0.0 3.0 2 0 0 2 2 2 1 Heavy-metal-associated domain ATPase-cat_bd PF12156.8 gi|257373045|ref|YP_003175819.1| - 0.0017 19.1 0.3 0.0043 17.8 0.2 1.7 2 0 0 2 2 2 1 Putative metal-binding domain of cation transport ATPase Hydrolase_3 PF08282.12 gi|257373045|ref|YP_003175819.1| - 0.0032 17.2 0.2 0.0053 16.5 0.2 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase HAD PF12710.7 gi|257373045|ref|YP_003175819.1| - 0.037 14.4 0.6 0.2 12.0 0.6 2.2 1 1 0 1 1 1 0 haloacid dehalogenase-like hydrolase DsbD_2 PF13386.6 gi|257373046|ref|YP_003175820.1| - 2.8e-49 167.8 16.5 3.3e-49 167.5 16.5 1.0 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region MCPsignal PF00015.21 gi|257373048|ref|YP_003175822.1| - 1.7e-52 177.7 49.3 5.5e-47 159.8 24.8 3.6 1 1 2 3 3 3 3 Methyl-accepting chemotaxis protein (MCP) signalling domain Protoglobin PF11563.8 gi|257373048|ref|YP_003175822.1| - 5.1e-32 111.0 0.8 8e-31 107.1 0.8 2.8 1 1 0 1 1 1 1 Protoglobin DUF948 PF06103.11 gi|257373048|ref|YP_003175822.1| - 2.9e-06 27.5 32.4 0.0015 18.7 3.4 5.4 2 2 2 4 4 4 2 Bacterial protein of unknown function (DUF948) Laminin_II PF06009.12 gi|257373048|ref|YP_003175822.1| - 0.0014 18.6 29.4 0.86 9.6 1.8 4.5 2 2 0 3 3 3 2 Laminin Domain II Spc7 PF08317.11 gi|257373048|ref|YP_003175822.1| - 0.0051 15.7 7.1 0.0051 15.7 7.1 2.7 3 0 0 3 3 3 2 Spc7 kinetochore protein BLOC1_2 PF10046.9 gi|257373048|ref|YP_003175822.1| - 0.0065 16.7 25.6 0.1 12.9 1.3 5.3 3 2 3 6 6 5 2 Biogenesis of lysosome-related organelles complex-1 subunit 2 IMD PF08397.11 gi|257373048|ref|YP_003175822.1| - 0.014 14.8 2.8 0.041 13.3 0.5 2.4 1 1 1 2 2 2 0 IRSp53/MIM homology domain Syntaxin-6_N PF09177.11 gi|257373048|ref|YP_003175822.1| - 0.015 15.8 2.0 0.015 15.8 2.0 5.2 3 3 2 5 5 5 0 Syntaxin 6, N-terminal DUF4047 PF13256.6 gi|257373048|ref|YP_003175822.1| - 0.027 14.6 1.8 0.027 14.6 1.8 2.8 2 1 1 3 3 3 0 Domain of unknown function (DUF4047) KxDL PF10241.9 gi|257373048|ref|YP_003175822.1| - 0.033 14.5 7.2 2.5 8.4 0.1 4.9 4 1 1 5 5 5 0 Uncharacterized conserved protein DUF1664 PF07889.12 gi|257373048|ref|YP_003175822.1| - 0.058 13.4 28.3 0.59 10.2 2.0 4.8 4 1 1 5 5 5 0 Protein of unknown function (DUF1664) DASH_Dad2 PF08654.10 gi|257373048|ref|YP_003175822.1| - 0.064 13.7 16.5 1.2 9.6 1.1 4.7 1 1 2 4 4 4 0 DASH complex subunit Dad2 DUF1043 PF06295.12 gi|257373048|ref|YP_003175822.1| - 0.065 13.2 0.1 2.5 8.1 0.0 2.8 2 1 0 2 2 2 0 Protein of unknown function (DUF1043) IFT57 PF10498.9 gi|257373048|ref|YP_003175822.1| - 0.15 11.0 15.7 0.46 9.4 7.0 2.5 1 1 1 2 2 2 0 Intra-flagellar transport protein 57 CREPT PF16566.5 gi|257373048|ref|YP_003175822.1| - 0.49 10.5 12.2 3.8 7.7 2.3 3.6 1 1 3 4 4 4 0 Cell-cycle alteration and expression-elevated protein in tumour TBCA PF02970.16 gi|257373048|ref|YP_003175822.1| - 0.5 10.7 19.9 0.11 12.9 1.1 4.0 4 0 0 4 4 3 0 Tubulin binding cofactor A DUF4200 PF13863.6 gi|257373048|ref|YP_003175822.1| - 0.55 10.6 13.4 2.3 8.6 2.8 3.8 2 2 0 2 2 2 0 Domain of unknown function (DUF4200) Tweety PF04906.13 gi|257373048|ref|YP_003175822.1| - 0.74 8.4 14.8 1.7 7.2 0.9 3.8 3 1 1 4 4 4 0 Tweety Cortex-I_coil PF09304.10 gi|257373048|ref|YP_003175822.1| - 0.76 10.0 16.4 7.5 6.8 0.3 4.3 1 1 4 5 5 5 0 Cortexillin I, coiled coil Serine_rich PF08824.10 gi|257373048|ref|YP_003175822.1| - 1.4 8.9 10.3 1.2 9.1 1.3 3.6 1 1 2 3 3 3 0 Serine rich protein interaction domain Octopine_DH PF02317.17 gi|257373048|ref|YP_003175822.1| - 1.4 9.0 5.5 0.34 11.0 0.5 2.5 3 1 0 3 3 2 0 NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain TPR_20 PF14561.6 gi|257373048|ref|YP_003175822.1| - 3.6 8.0 7.8 3.1 8.2 1.0 3.2 2 1 0 2 2 2 0 Tetratricopeptide repeat DUF3450 PF11932.8 gi|257373048|ref|YP_003175822.1| - 4.3 6.6 31.8 0.26 10.5 2.6 4.2 1 1 3 4 4 4 0 Protein of unknown function (DUF3450) Fib_alpha PF08702.10 gi|257373048|ref|YP_003175822.1| - 7 6.8 19.8 6.6 6.9 1.3 4.7 3 2 3 6 6 6 0 Fibrinogen alpha/beta chain family ELFV_dehydrog PF00208.21 gi|257373049|ref|YP_003175823.1| - 1.1e-69 234.8 0.0 1.4e-69 234.5 0.0 1.1 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ELFV_dehydrog_N PF02812.18 gi|257373049|ref|YP_003175823.1| - 4.9e-55 184.9 0.0 8.2e-55 184.2 0.0 1.4 1 0 0 1 1 1 1 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 2-Hacid_dh_C PF02826.19 gi|257373049|ref|YP_003175823.1| - 0.0005 19.5 0.0 0.00086 18.7 0.0 1.3 1 0 0 1 1 1 1 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Bac_GDH PF05088.12 gi|257373049|ref|YP_003175823.1| - 0.13 9.8 0.0 0.23 8.9 0.0 1.3 1 0 0 1 1 1 0 Bacterial NAD-glutamate dehydrogenase IlvN PF07991.12 gi|257373049|ref|YP_003175823.1| - 0.13 11.8 0.0 0.25 10.9 0.0 1.5 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain Zn-ribbon_8 PF09723.10 gi|257373050|ref|YP_003175824.1| - 0.00032 20.7 3.9 0.00067 19.7 3.9 1.6 1 1 0 1 1 1 1 Zinc ribbon domain DZR PF12773.7 gi|257373050|ref|YP_003175824.1| - 0.00059 19.8 0.9 0.00066 19.7 0.9 1.1 1 0 0 1 1 1 1 Double zinc ribbon zf-C2HC5 PF06221.13 gi|257373050|ref|YP_003175824.1| - 0.0019 18.1 0.2 0.0022 17.9 0.2 1.1 1 0 0 1 1 1 1 Putative zinc finger motif, C2HC5-type DUF1272 PF06906.11 gi|257373050|ref|YP_003175824.1| - 0.0039 17.2 1.3 0.0046 17.0 1.3 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF1272) zinc_ribbon_2 PF13240.6 gi|257373050|ref|YP_003175824.1| - 0.0068 16.1 1.5 0.012 15.4 1.5 1.4 1 1 0 1 1 1 1 zinc-ribbon domain HypA PF01155.19 gi|257373050|ref|YP_003175824.1| - 0.0076 16.3 0.8 0.0081 16.2 0.8 1.1 1 0 0 1 1 1 1 Hydrogenase/urease nickel incorporation, metallochaperone, hypA zf-ribbon_3 PF13248.6 gi|257373050|ref|YP_003175824.1| - 0.015 14.6 2.7 0.039 13.4 2.7 1.6 1 1 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_9 PF14369.6 gi|257373050|ref|YP_003175824.1| - 0.017 15.4 3.0 0.032 14.5 2.4 1.7 1 1 1 2 2 2 0 zinc-ribbon OrfB_Zn_ribbon PF07282.11 gi|257373050|ref|YP_003175824.1| - 0.021 14.7 0.6 0.025 14.5 0.6 1.1 1 0 0 1 1 1 0 Putative transposase DNA-binding domain Prim_Zn_Ribbon PF08273.12 gi|257373050|ref|YP_003175824.1| - 0.022 15.0 0.2 0.022 15.0 0.2 1.6 2 0 0 2 2 2 0 Zinc-binding domain of primase-helicase DNA_RNApol_7kD PF03604.13 gi|257373050|ref|YP_003175824.1| - 0.039 13.6 1.6 0.056 13.1 1.6 1.3 1 0 0 1 1 1 0 DNA directed RNA polymerase, 7 kDa subunit Auto_anti-p27 PF06677.12 gi|257373050|ref|YP_003175824.1| - 0.15 12.3 2.3 0.2 11.8 2.3 1.3 1 0 0 1 1 1 0 Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) DUF2072 PF09845.9 gi|257373050|ref|YP_003175824.1| - 0.21 11.9 1.3 0.25 11.6 1.3 1.1 1 0 0 1 1 1 0 Zn-ribbon containing protein zf-Mss51 PF13824.6 gi|257373050|ref|YP_003175824.1| - 0.47 10.6 5.5 0.53 10.4 0.3 2.1 1 1 1 2 2 2 0 Zinc-finger of mitochondrial splicing suppressor 51 zf_UBZ PF18439.1 gi|257373050|ref|YP_003175824.1| - 0.49 10.0 2.9 12 5.5 0.1 2.2 1 1 1 2 2 2 0 Ubiquitin-Binding Zinc Finger zf-H2C2_2 PF13465.6 gi|257373050|ref|YP_003175824.1| - 4.2 8.0 7.2 12 6.5 1.2 2.1 1 1 1 2 2 2 0 Zinc-finger double domain BAT PF15915.5 gi|257373051|ref|YP_003175825.1| - 3.5e-39 134.2 14.4 3.5e-39 134.2 14.4 4.1 4 1 0 4 4 4 1 GAF and HTH_10 associated domain GAF_2 PF13185.6 gi|257373051|ref|YP_003175825.1| - 2.2e-22 79.8 11.0 1.9e-16 60.6 0.6 3.1 3 0 0 3 3 3 2 GAF domain HTH_10 PF04967.12 gi|257373051|ref|YP_003175825.1| - 2.8e-18 65.5 0.0 2.7e-17 62.3 0.0 2.5 2 0 0 2 2 2 1 HTH DNA binding domain PAS_4 PF08448.10 gi|257373051|ref|YP_003175825.1| - 3.3e-15 56.3 7.9 9.8e-10 38.7 0.6 4.3 4 1 0 4 4 4 2 PAS fold GAF_3 PF13492.6 gi|257373051|ref|YP_003175825.1| - 1.1e-10 42.0 0.3 4.3e-05 23.9 0.0 2.7 2 0 0 2 2 2 2 GAF domain PAS_9 PF13426.7 gi|257373051|ref|YP_003175825.1| - 5.6e-10 39.4 0.2 0.00015 22.0 0.0 3.1 3 0 0 3 3 3 2 PAS domain Response_reg PF00072.24 gi|257373051|ref|YP_003175825.1| - 1e-08 35.3 0.0 2.6e-08 34.0 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain GAF PF01590.26 gi|257373051|ref|YP_003175825.1| - 7.5e-07 29.8 0.3 0.047 14.3 0.0 3.0 2 0 0 2 2 2 2 GAF domain PAS PF00989.25 gi|257373051|ref|YP_003175825.1| - 1.4e-06 28.2 0.2 0.0053 16.7 0.0 3.1 3 0 0 3 3 3 2 PAS fold PAS_7 PF12860.7 gi|257373051|ref|YP_003175825.1| - 1.8e-05 24.9 0.5 0.027 14.6 0.0 4.0 3 1 0 3 3 3 1 PAS fold PAS_8 PF13188.7 gi|257373051|ref|YP_003175825.1| - 0.00043 20.2 0.1 0.05 13.6 0.0 3.1 2 0 0 2 2 2 1 PAS domain HTH_24 PF13412.6 gi|257373051|ref|YP_003175825.1| - 0.018 14.6 0.1 2.6 7.7 0.0 2.9 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding Sigma70_r4 PF04545.16 gi|257373051|ref|YP_003175825.1| - 0.027 14.0 0.1 1.4 8.5 0.0 3.0 2 0 0 2 2 2 0 Sigma-70, region 4 DUF4288 PF14119.6 gi|257373051|ref|YP_003175825.1| - 0.055 13.9 0.3 0.37 11.2 0.0 2.5 2 0 0 2 2 2 0 Domain of unknown function (DUF4288) Peripla_BP_2 PF01497.18 gi|257373052|ref|YP_003175826.1| - 1.5e-21 77.0 0.0 1.9e-21 76.7 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein TAT_signal PF10518.9 gi|257373052|ref|YP_003175826.1| - 0.022 14.6 0.0 0.042 13.7 0.0 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence DUF3558 PF12079.8 gi|257373052|ref|YP_003175826.1| - 0.22 11.5 6.2 0.36 10.8 6.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3558) DrsE_2 PF13686.6 gi|257373053|ref|YP_003175827.1| - 2.2e-53 180.3 0.2 2.7e-53 180.0 0.2 1.1 1 0 0 1 1 1 1 DsrE/DsrF/DrsH-like family DrsE PF02635.15 gi|257373053|ref|YP_003175827.1| - 1.5e-07 31.8 0.0 5.9e-07 29.9 0.0 1.8 1 1 0 1 1 1 1 DsrE/DsrF-like family Prenyltrans PF00432.21 gi|257373053|ref|YP_003175827.1| - 0.049 13.4 0.1 0.1 12.4 0.1 1.5 1 0 0 1 1 1 0 Prenyltransferase and squalene oxidase repeat TusA PF01206.17 gi|257373054|ref|YP_003175828.1| - 8.1e-20 70.4 0.0 9.3e-20 70.2 0.0 1.0 1 0 0 1 1 1 1 Sulfurtransferase TusA DUF2249 PF10006.9 gi|257373054|ref|YP_003175828.1| - 0.16 11.8 0.0 0.43 10.5 0.0 1.6 2 0 0 2 2 2 0 Uncharacterized conserved protein (DUF2249) Lactamase_B PF00753.27 gi|257373055|ref|YP_003175829.1| - 2.7e-14 53.6 5.5 4.6e-14 52.9 5.5 1.4 1 0 0 1 1 1 1 Metallo-beta-lactamase superfamily Rhodanese PF00581.20 gi|257373055|ref|YP_003175829.1| - 2.7e-11 44.0 0.0 5e-11 43.1 0.0 1.5 1 0 0 1 1 1 1 Rhodanese-like domain Lactamase_B_2 PF12706.7 gi|257373055|ref|YP_003175829.1| - 0.0006 19.4 0.2 0.0012 18.4 0.2 1.5 1 0 0 1 1 1 1 Beta-lactamase superfamily domain DUF4454 PF14628.6 gi|257373055|ref|YP_003175829.1| - 0.036 13.9 0.2 0.081 12.7 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function (DUF4454) Sulf_transp PF04143.14 gi|257373056|ref|YP_003175830.1| - 5.5e-08 32.7 21.9 4.4e-07 29.8 21.9 2.3 1 1 0 1 1 1 1 Sulphur transport DUF1404 PF07185.11 gi|257373056|ref|YP_003175830.1| - 0.87 9.3 5.8 0.057 13.1 0.6 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1404) DUF4282 PF14110.6 gi|257373056|ref|YP_003175830.1| - 2.6 8.8 6.6 0.69 10.7 1.7 2.4 2 1 0 2 2 2 0 Domain of unknown function (DUF4282) Trp_oprn_chp PF09534.10 gi|257373056|ref|YP_003175830.1| - 6.3 6.5 13.1 0.2 11.4 3.6 2.5 1 1 2 3 3 3 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) Sulf_transp PF04143.14 gi|257373057|ref|YP_003175831.1| - 3.1e-09 36.9 5.8 3.1e-09 36.9 5.8 2.0 1 1 1 2 2 2 1 Sulphur transport Pneumo_att_G PF05539.11 gi|257373057|ref|YP_003175831.1| - 0.9 9.1 10.0 1.2 8.6 10.0 1.1 1 0 0 1 1 1 0 Pneumovirinae attachment membrane glycoprotein G PHO4 PF01384.20 gi|257373058|ref|YP_003175832.1| - 1.8e-44 152.2 28.1 1.8e-44 152.2 28.1 1.4 1 1 0 1 1 1 1 Phosphate transporter family TrmB PF01978.19 gi|257373059|ref|YP_003175833.1| - 4e-18 65.1 0.0 5.3e-18 64.7 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.22 gi|257373059|ref|YP_003175833.1| - 1.8e-06 27.7 0.1 4e-06 26.7 0.0 1.6 2 0 0 2 2 1 1 MarR family HTH_IclR PF09339.10 gi|257373059|ref|YP_003175833.1| - 1e-05 25.2 0.0 1.8e-05 24.4 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain Penicillinase_R PF03965.16 gi|257373059|ref|YP_003175833.1| - 1.3e-05 25.5 0.0 1.6e-05 25.2 0.0 1.1 1 0 0 1 1 1 1 Penicillinase repressor HTH_20 PF12840.7 gi|257373059|ref|YP_003175833.1| - 1.7e-05 24.8 0.1 3.2e-05 23.9 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain MarR_2 PF12802.7 gi|257373059|ref|YP_003175833.1| - 2.7e-05 24.0 0.1 4.1e-05 23.4 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|257373059|ref|YP_003175833.1| - 0.0002 20.9 0.0 0.00029 20.3 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_11 PF08279.12 gi|257373059|ref|YP_003175833.1| - 0.0003 20.7 0.0 0.00049 20.0 0.0 1.3 1 0 0 1 1 1 1 HTH domain HTH_23 PF13384.6 gi|257373059|ref|YP_003175833.1| - 0.00055 19.6 0.0 0.00099 18.8 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain UMPH-1 PF05822.12 gi|257373059|ref|YP_003175833.1| - 0.0016 18.0 0.0 0.002 17.7 0.0 1.3 1 0 0 1 1 1 1 Pyrimidine 5'-nucleotidase (UMPH-1) HTH_38 PF13936.6 gi|257373059|ref|YP_003175833.1| - 0.0023 17.7 0.0 0.0037 17.0 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_27 PF13463.6 gi|257373059|ref|YP_003175833.1| - 0.0085 16.6 0.0 0.012 16.0 0.0 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain GntR PF00392.21 gi|257373059|ref|YP_003175833.1| - 0.016 14.9 0.2 0.028 14.0 0.2 1.4 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family RuvB_C PF05491.13 gi|257373059|ref|YP_003175833.1| - 0.024 14.5 0.0 0.041 13.8 0.0 1.3 1 0 0 1 1 1 0 RuvB C-terminal winged helix domain PadR PF03551.14 gi|257373059|ref|YP_003175833.1| - 0.026 14.5 0.1 0.067 13.2 0.1 1.7 1 1 1 2 2 2 0 Transcriptional regulator PadR-like family HTH_29 PF13551.6 gi|257373059|ref|YP_003175833.1| - 0.026 14.6 0.0 0.039 14.0 0.0 1.4 1 1 0 1 1 1 0 Winged helix-turn helix HTH_Crp_2 PF13545.6 gi|257373059|ref|YP_003175833.1| - 0.043 13.8 0.1 0.1 12.6 0.1 1.6 1 1 1 2 2 2 0 Crp-like helix-turn-helix domain HTH_28 PF13518.6 gi|257373059|ref|YP_003175833.1| - 0.046 13.8 0.0 0.082 13.0 0.0 1.4 1 0 0 1 1 1 0 Helix-turn-helix domain 2OG-Fe_Oxy_2 PF10014.9 gi|257373059|ref|YP_003175833.1| - 0.062 13.1 0.1 0.078 12.8 0.1 1.2 1 0 0 1 1 1 0 2OG-Fe dioxygenase DUF4423 PF14394.6 gi|257373059|ref|YP_003175833.1| - 0.064 13.0 0.0 0.12 12.0 0.0 1.4 1 1 0 1 1 1 0 Domain of unknown function (DUF4423) Rrf2 PF02082.20 gi|257373059|ref|YP_003175833.1| - 0.066 13.6 0.0 0.11 12.9 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator HTH_CodY PF08222.11 gi|257373059|ref|YP_003175833.1| - 0.19 11.3 0.0 0.35 10.5 0.0 1.4 1 0 0 1 1 1 0 CodY helix-turn-helix domain Thioredoxin PF00085.20 gi|257373060|ref|YP_003175834.1| - 1.1e-26 92.8 0.0 1.2e-26 92.6 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin Thioredoxin_2 PF13098.6 gi|257373060|ref|YP_003175834.1| - 1.3e-10 41.7 0.3 3.2e-09 37.2 0.2 2.2 1 1 0 1 1 1 1 Thioredoxin-like domain Thioredoxin_3 PF13192.6 gi|257373060|ref|YP_003175834.1| - 1.6e-06 28.0 0.3 3.7e-06 26.9 0.2 1.6 1 1 1 2 2 2 1 Thioredoxin domain DSBA PF01323.20 gi|257373060|ref|YP_003175834.1| - 1.9e-06 27.8 0.2 1.9e-06 27.8 0.2 1.6 2 1 0 2 2 2 1 DSBA-like thioredoxin domain TraF PF13728.6 gi|257373060|ref|YP_003175834.1| - 2.7e-06 27.4 0.0 3.6e-06 27.0 0.0 1.1 1 0 0 1 1 1 1 F plasmid transfer operon protein Thioredoxin_7 PF13899.6 gi|257373060|ref|YP_003175834.1| - 2.1e-05 24.6 0.0 3.1e-05 24.1 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin-like Thioredoxin_9 PF14595.6 gi|257373060|ref|YP_003175834.1| - 6.1e-05 22.8 0.0 7.7e-05 22.5 0.0 1.1 1 0 0 1 1 1 1 Thioredoxin HyaE PF07449.11 gi|257373060|ref|YP_003175834.1| - 6.9e-05 22.8 0.1 0.00015 21.6 0.0 1.6 1 1 1 2 2 2 1 Hydrogenase-1 expression protein HyaE Thioredoxin_8 PF13905.6 gi|257373060|ref|YP_003175834.1| - 0.00015 22.0 0.0 0.42 11.0 0.0 2.2 1 1 1 2 2 2 2 Thioredoxin-like OST3_OST6 PF04756.13 gi|257373060|ref|YP_003175834.1| - 0.0016 17.8 0.0 0.0019 17.6 0.0 1.1 1 0 0 1 1 1 1 OST3 / OST6 family, transporter family DUF836 PF05768.14 gi|257373060|ref|YP_003175834.1| - 0.0016 18.8 0.0 0.0022 18.4 0.0 1.3 1 0 0 1 1 1 1 Glutaredoxin-like domain (DUF836) Thioredoxin_5 PF13743.6 gi|257373060|ref|YP_003175834.1| - 0.0022 17.7 0.0 0.003 17.3 0.0 1.3 1 0 0 1 1 1 1 Thioredoxin Glutaredoxin PF00462.24 gi|257373060|ref|YP_003175834.1| - 0.01 16.1 0.0 0.019 15.2 0.0 1.5 1 0 0 1 1 1 1 Glutaredoxin AhpC-TSA PF00578.21 gi|257373060|ref|YP_003175834.1| - 0.053 13.4 0.1 5 7.1 0.1 2.1 1 1 1 2 2 2 0 AhpC/TSA family Thioredoxin_4 PF13462.6 gi|257373060|ref|YP_003175834.1| - 0.14 12.3 0.0 0.16 12.1 0.0 1.3 1 0 0 1 1 1 0 Thioredoxin P5CR_dimer PF14748.6 gi|257373061|ref|YP_003175835.1| - 4.7e-35 120.0 0.3 9.7e-35 118.9 0.3 1.6 1 0 0 1 1 1 1 Pyrroline-5-carboxylate reductase dimerisation F420_oxidored PF03807.17 gi|257373061|ref|YP_003175835.1| - 2.2e-16 60.2 1.0 5.9e-16 58.8 0.3 2.1 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent NAD_binding_2 PF03446.15 gi|257373061|ref|YP_003175835.1| - 2.2e-06 27.9 0.1 7.3e-06 26.2 0.1 1.9 1 1 0 1 1 1 1 NAD binding domain of 6-phosphogluconate dehydrogenase Sacchrp_dh_NADP PF03435.18 gi|257373061|ref|YP_003175835.1| - 7.5e-05 23.0 0.1 0.00019 21.7 0.1 1.7 1 0 0 1 1 1 1 Saccharopine dehydrogenase NADP binding domain TrkA_N PF02254.18 gi|257373061|ref|YP_003175835.1| - 0.00027 21.2 0.3 0.0011 19.3 0.1 2.2 1 1 0 1 1 1 1 TrkA-N domain 3HCDH_N PF02737.18 gi|257373061|ref|YP_003175835.1| - 0.00033 20.6 0.3 0.00077 19.4 0.1 1.8 2 0 0 2 2 2 1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain PDH PF02153.17 gi|257373061|ref|YP_003175835.1| - 0.00037 19.6 0.1 0.0042 16.1 0.2 2.0 2 0 0 2 2 2 1 Prephenate dehydrogenase Methyltransf_25 PF13649.6 gi|257373061|ref|YP_003175835.1| - 0.0032 18.1 0.2 0.011 16.5 0.1 2.0 2 1 0 2 2 2 1 Methyltransferase domain UDPG_MGDP_dh_N PF03721.14 gi|257373061|ref|YP_003175835.1| - 0.011 15.3 0.3 0.024 14.2 0.3 1.6 1 1 0 1 1 1 0 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Shikimate_DH PF01488.20 gi|257373061|ref|YP_003175835.1| - 0.012 15.7 0.1 0.024 14.7 0.1 1.6 1 0 0 1 1 1 0 Shikimate / quinate 5-dehydrogenase ApbA PF02558.16 gi|257373061|ref|YP_003175835.1| - 0.018 14.7 1.0 0.12 12.1 1.0 2.0 1 1 0 1 1 1 0 Ketopantoate reductase PanE/ApbA NAD_Gly3P_dh_N PF01210.23 gi|257373061|ref|YP_003175835.1| - 0.018 15.0 1.4 2.3 8.2 0.1 2.5 1 1 1 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2-Hacid_dh_C PF02826.19 gi|257373061|ref|YP_003175835.1| - 0.05 13.0 0.1 0.081 12.3 0.1 1.3 1 0 0 1 1 1 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_7 PF13241.6 gi|257373061|ref|YP_003175835.1| - 0.069 13.6 1.3 0.092 13.2 0.3 1.8 2 1 0 2 2 2 0 Putative NAD(P)-binding IlvN PF07991.12 gi|257373061|ref|YP_003175835.1| - 0.076 12.6 0.1 0.11 12.1 0.1 1.4 1 0 0 1 1 1 0 Acetohydroxy acid isomeroreductase, NADPH-binding domain ThiF PF00899.21 gi|257373061|ref|YP_003175835.1| - 0.11 11.8 0.2 0.22 10.8 0.2 1.4 1 0 0 1 1 1 0 ThiF family NAD_binding_10 PF13460.6 gi|257373061|ref|YP_003175835.1| - 1.2 9.0 7.6 0.48 10.3 2.8 2.6 2 1 0 2 2 2 0 NAD(P)H-binding YbaB_DNA_bd PF02575.16 gi|257373061|ref|YP_003175835.1| - 7.8 6.8 7.6 2.1 8.6 0.1 3.3 4 1 1 5 5 5 0 YbaB/EbfC DNA-binding family AA_kinase PF00696.28 gi|257373062|ref|YP_003175836.1| - 3.9e-38 131.4 2.3 5.4e-38 131.0 2.3 1.2 1 0 0 1 1 1 1 Amino acid kinase family Aldedh PF00171.22 gi|257373063|ref|YP_003175837.1| - 2.1e-24 85.9 7.1 9e-21 73.9 3.3 2.4 2 1 0 2 2 2 2 Aldehyde dehydrogenase family AFOR_C PF01314.18 gi|257373063|ref|YP_003175837.1| - 0.1 11.6 0.1 0.2 10.6 0.1 1.4 1 0 0 1 1 1 0 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 LTXXQ PF07813.12 gi|257373063|ref|YP_003175837.1| - 0.15 12.8 2.8 0.27 12.0 1.9 1.9 1 1 0 2 2 2 0 LTXXQ motif family protein SBP_bac_1 PF01547.25 gi|257373064|ref|YP_003175838.1| - 6.9e-13 49.2 2.5 1.7e-12 47.9 2.3 1.8 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|257373064|ref|YP_003175838.1| - 1.2e-12 47.8 0.0 2e-12 47.1 0.0 1.3 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.6 gi|257373064|ref|YP_003175838.1| - 1.5e-11 44.5 0.0 3.7e-11 43.2 0.0 1.7 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein UCR_Fe-S_N PF10399.9 gi|257373064|ref|YP_003175838.1| - 0.023 14.0 1.6 0.049 13.0 1.6 1.6 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal TAT_signal PF10518.9 gi|257373064|ref|YP_003175838.1| - 0.024 14.5 2.1 0.054 13.4 2.1 1.6 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence BPD_transp_1 PF00528.22 gi|257373065|ref|YP_003175839.1| - 2.4e-13 50.2 18.1 2.4e-13 50.2 18.1 1.7 1 1 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.22 gi|257373066|ref|YP_003175840.1| - 2.4e-11 43.7 10.3 2.4e-11 43.7 10.3 2.1 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.27 gi|257373067|ref|YP_003175841.1| - 4.1e-33 114.8 0.0 6.6e-33 114.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.10 gi|257373067|ref|YP_003175841.1| - 4.1e-10 39.7 1.0 1.2e-09 38.2 1.0 1.9 1 0 0 1 1 1 1 TOBE domain AAA_21 PF13304.6 gi|257373067|ref|YP_003175841.1| - 2.1e-06 27.8 0.1 0.031 14.1 0.0 2.5 2 1 0 3 3 3 2 AAA domain, putative AbiEii toxin, Type IV TA system CysA_C_terminal PF17850.1 gi|257373067|ref|YP_003175841.1| - 6e-05 23.5 0.5 0.00056 20.4 0.2 2.7 2 0 0 2 2 2 1 CysA C-terminal regulatory domain Rad17 PF03215.15 gi|257373067|ref|YP_003175841.1| - 0.0039 17.1 0.0 0.006 16.5 0.0 1.2 1 0 0 1 1 1 1 Rad17 P-loop domain AAA_16 PF13191.6 gi|257373067|ref|YP_003175841.1| - 0.0044 17.4 0.6 0.011 16.2 0.6 1.7 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|257373067|ref|YP_003175841.1| - 0.011 16.0 0.7 0.026 14.8 0.6 1.8 1 1 0 1 1 1 0 AAA domain SMC_N PF02463.19 gi|257373067|ref|YP_003175841.1| - 0.022 14.2 0.3 0.34 10.3 0.3 2.1 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain AAA PF00004.29 gi|257373067|ref|YP_003175841.1| - 0.022 15.2 0.9 0.14 12.6 0.9 2.4 1 1 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) PRK PF00485.18 gi|257373067|ref|YP_003175841.1| - 0.039 13.7 0.0 0.079 12.7 0.0 1.6 2 0 0 2 2 2 0 Phosphoribulokinase / Uridine kinase family AAA_30 PF13604.6 gi|257373067|ref|YP_003175841.1| - 0.089 12.5 0.1 0.18 11.5 0.1 1.4 1 0 0 1 1 1 0 AAA domain FA_hydroxylase PF04116.13 gi|257373068|ref|YP_003175842.1| - 0.14 12.5 0.0 0.14 12.5 0.0 2.3 3 0 0 3 3 3 0 Fatty acid hydroxylase superfamily DUF4538 PF15061.6 gi|257373068|ref|YP_003175842.1| - 8 6.3 6.4 2.4 7.9 0.6 2.6 2 0 0 2 2 2 0 Domain of unknown function (DUF4538) Usp PF00582.26 gi|257373069|ref|YP_003175843.1| - 1.7e-61 206.9 12.4 1.6e-30 106.5 5.1 2.0 2 0 0 2 2 2 2 Universal stress protein family GARS_N PF02844.15 gi|257373069|ref|YP_003175843.1| - 0.0052 17.6 0.1 0.71 10.7 0.0 2.4 2 0 0 2 2 2 2 Phosphoribosylglycinamide synthetase, N domain Lactamase_B_4 PF13691.6 gi|257373069|ref|YP_003175843.1| - 0.032 13.9 0.0 7.6 6.3 0.0 2.3 2 0 0 2 2 2 0 tRNase Z endonuclease Pyridox_ox_2 PF12900.7 gi|257373070|ref|YP_003175844.1| - 4.5e-21 75.3 0.0 5.1e-21 75.1 0.0 1.0 1 0 0 1 1 1 1 Pyridoxamine 5'-phosphate oxidase Putative_PNPOx PF01243.20 gi|257373070|ref|YP_003175844.1| - 0.051 13.8 0.0 0.065 13.4 0.0 1.2 1 0 0 1 1 1 0 Pyridoxamine 5'-phosphate oxidase Usp PF00582.26 gi|257373071|ref|YP_003175845.1| - 4.9e-57 192.4 4.9 6.5e-29 101.3 1.7 2.1 2 0 0 2 2 2 2 Universal stress protein family YdjM PF04307.14 gi|257373072|ref|YP_003175846.1| - 0.0003 20.1 19.5 0.0057 16.0 19.4 2.5 1 1 0 1 1 1 1 LexA-binding, inner membrane-associated putative hydrolase PRA1 PF03208.19 gi|257373072|ref|YP_003175846.1| - 2.7 7.6 6.2 7.7 6.1 1.4 2.2 2 0 0 2 2 2 0 PRA1 family protein Usp PF00582.26 gi|257373073|ref|YP_003175847.1| - 1.1e-32 113.5 2.2 1.2e-32 113.3 2.2 1.0 1 0 0 1 1 1 1 Universal stress protein family IclR PF01614.18 gi|257373075|ref|YP_003175849.1| - 8.9e-37 125.8 0.0 2e-36 124.6 0.0 1.6 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|257373075|ref|YP_003175849.1| - 7.6e-12 44.9 0.3 3.5e-10 39.5 0.0 2.9 3 0 0 3 3 3 1 IclR helix-turn-helix domain MarR_2 PF12802.7 gi|257373075|ref|YP_003175849.1| - 2.1e-05 24.3 0.0 7.3e-05 22.6 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_5 PF01022.20 gi|257373075|ref|YP_003175849.1| - 2.2e-05 24.2 0.1 6.5e-05 22.7 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_11 PF08279.12 gi|257373075|ref|YP_003175849.1| - 2.7e-05 24.0 0.0 5.9e-05 22.9 0.0 1.6 1 0 0 1 1 1 1 HTH domain HTH_24 PF13412.6 gi|257373075|ref|YP_003175849.1| - 0.00022 20.7 0.0 0.00059 19.3 0.0 1.8 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding MarR PF01047.22 gi|257373075|ref|YP_003175849.1| - 0.00026 20.8 0.0 0.00056 19.8 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|257373075|ref|YP_003175849.1| - 0.00031 21.2 0.0 0.001 19.5 0.0 1.8 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_45 PF14947.6 gi|257373075|ref|YP_003175849.1| - 0.0024 17.8 0.0 0.0053 16.7 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_DeoR PF08220.12 gi|257373075|ref|YP_003175849.1| - 0.023 14.4 0.1 0.097 12.4 0.0 2.1 2 0 0 2 2 2 0 DeoR-like helix-turn-helix domain HTH_20 PF12840.7 gi|257373075|ref|YP_003175849.1| - 0.027 14.5 0.0 0.083 13.0 0.0 1.8 2 0 0 2 2 2 0 Helix-turn-helix domain ALIX_LYPXL_bnd PF13949.6 gi|257373075|ref|YP_003175849.1| - 0.032 13.5 0.1 5.5 6.2 0.1 2.1 2 0 0 2 2 2 0 ALIX V-shaped domain binding to HIV HTH_34 PF13601.6 gi|257373075|ref|YP_003175849.1| - 0.065 13.4 0.0 0.12 12.6 0.0 1.4 1 0 0 1 1 1 0 Winged helix DNA-binding domain FeoC PF09012.10 gi|257373075|ref|YP_003175849.1| - 0.081 13.0 0.0 0.15 12.1 0.0 1.5 1 0 0 1 1 1 0 FeoC like transcriptional regulator TrmB PF01978.19 gi|257373075|ref|YP_003175849.1| - 0.15 12.0 0.0 0.86 9.5 0.0 2.1 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB Aldo_ket_red PF00248.21 gi|257373076|ref|YP_003175850.1| - 2.3e-62 210.9 0.0 4.8e-60 203.2 0.0 2.0 1 1 0 1 1 1 1 Aldo/keto reductase family PP-binding PF00550.25 gi|257373076|ref|YP_003175850.1| - 0.03 14.7 0.5 0.083 13.3 0.1 2.0 2 0 0 2 2 2 0 Phosphopantetheine attachment site DUF5021 PF16424.5 gi|257373076|ref|YP_003175850.1| - 0.13 12.0 0.0 0.21 11.4 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF5021) Ish1 PF10281.9 gi|257373076|ref|YP_003175850.1| - 0.2 12.0 0.7 13 6.2 0.0 2.7 3 0 0 3 3 3 0 Putative stress-responsive nuclear envelope protein GFO_IDH_MocA PF01408.22 gi|257373077|ref|YP_003175851.1| - 1.1e-18 68.2 0.2 2.7e-18 66.9 0.2 1.7 1 1 0 1 1 1 1 Oxidoreductase family, NAD-binding Rossmann fold AP_endonuc_2 PF01261.24 gi|257373077|ref|YP_003175851.1| - 0.063 12.7 0.0 0.097 12.1 0.0 1.3 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel DUF2264 PF10022.9 gi|257373078|ref|YP_003175852.1| - 1.2e-124 416.0 0.8 1.6e-124 415.6 0.8 1.2 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2264) Lar_N PF09861.9 gi|257373079|ref|YP_003175853.1| - 0.00099 18.3 0.0 0.0015 17.7 0.0 1.3 1 0 0 1 1 1 1 Lactate racemase N-terminal domain FAA_hydrolase PF01557.18 gi|257373080|ref|YP_003175854.1| - 2.8e-64 216.8 0.0 3.3e-64 216.5 0.0 1.1 1 0 0 1 1 1 1 Fumarylacetoacetate (FAA) hydrolase family DUF2437 PF10370.9 gi|257373080|ref|YP_003175854.1| - 3.7e-05 24.5 0.1 0.00034 21.4 0.0 2.6 3 0 0 3 3 3 1 Domain of unknown function (DUF2437) DUF4147 PF13660.6 gi|257373081|ref|YP_003175855.1| - 3.6e-75 252.4 2.8 6.4e-75 251.6 2.8 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4147) MOFRL PF05161.13 gi|257373081|ref|YP_003175855.1| - 7.7e-28 96.9 7.3 2.9e-27 95.0 7.3 2.1 1 0 0 1 1 1 1 MOFRL family PHP_C PF13263.6 gi|257373082|ref|YP_003175856.1| - 5.2e-07 29.3 1.2 1.3e-05 24.9 0.1 2.9 3 0 0 3 3 3 1 PHP-associated PHP PF02811.19 gi|257373082|ref|YP_003175856.1| - 0.077 13.3 0.1 0.11 12.8 0.1 1.2 1 0 0 1 1 1 0 PHP domain MFS_1 PF07690.16 gi|257373083|ref|YP_003175857.1| - 9.2e-40 136.6 59.3 1e-27 97.0 25.2 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily Sugar_tr PF00083.24 gi|257373083|ref|YP_003175857.1| - 0.0019 17.1 3.1 0.0019 17.1 3.1 3.7 2 1 1 3 3 3 2 Sugar (and other) transporter Glyco_hydro_88 PF07470.13 gi|257373084|ref|YP_003175858.1| - 1.8e-29 102.9 0.9 2.3e-29 102.5 0.9 1.1 1 0 0 1 1 1 1 Glycosyl Hydrolase Family 88 # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halomicrobium_mukohataei_DSM_12286_uid59107/NC_013201.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halomicrobium_mukohataei_DSM_12286_uid59107/NC_013201.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halomicrobium_mukohataei_DSM_12286_uid59107/NC_013201.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halomicrobium_mukohataei_DSM_12286_uid59107/NC_013201.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 12:33:22 2019 # [ok]