#                                                                           --- full sequence ---- --- best 1 domain ---- --- domain number estimation ----
# target name        accession  query name                       accession    E-value  score  bias   E-value  score  bias   exp reg clu  ov env dom rep inc description of target
#------------------- ----------             -------------------- ---------- --------- ------ ----- --------- ------ -----   --- --- --- --- --- --- --- --- ---------------------
AAA_25	PF13481.1	gi|313122740|ref|YP_004044666.1|	-	1.4e-05	24.5	0.0	0.0039	16.5	0.0	2.6	2	1	1	3	3	3	2	AAA	domain
AAA_10	PF12846.2	gi|313122740|ref|YP_004044666.1|	-	0.0021	17.5	0.0	0.19	11.1	0.0	2.2	2	0	0	2	2	2	1	AAA-like	domain
AAA	PF00004.24	gi|313122740|ref|YP_004044666.1|	-	0.006	16.7	0.0	2.1	8.5	0.0	2.3	2	0	0	2	2	2	2	ATPase	family	associated	with	various	cellular	activities	(AAA)
Zot	PF05707.7	gi|313122740|ref|YP_004044666.1|	-	0.013	15.0	0.1	5.2	6.4	0.0	2.2	2	0	0	2	2	2	0	Zonular	occludens	toxin	(Zot)
PhoH	PF02562.11	gi|313122740|ref|YP_004044666.1|	-	0.035	13.3	0.0	0.061	12.5	0.0	1.3	1	0	0	1	1	1	0	PhoH-like	protein
AAA_5	PF07728.9	gi|313122740|ref|YP_004044666.1|	-	0.076	12.7	0.0	0.13	11.9	0.0	1.4	1	0	0	1	1	1	0	AAA	domain	(dynein-related	subfamily)
IstB_IS21	PF01695.12	gi|313122740|ref|YP_004044666.1|	-	0.11	11.9	0.0	0.18	11.2	0.0	1.3	1	0	0	1	1	1	0	IstB-like	ATP	binding	protein
Mg_chelatase	PF01078.16	gi|313122740|ref|YP_004044666.1|	-	0.11	11.6	0.0	0.2	10.8	0.0	1.3	1	0	0	1	1	1	0	Magnesium	chelatase,	subunit	ChlI
RNA_helicase	PF00910.17	gi|313122740|ref|YP_004044666.1|	-	0.13	12.4	0.0	0.47	10.6	0.0	2.0	2	0	0	2	2	2	0	RNA	helicase
AAA_19	PF13245.1	gi|313122740|ref|YP_004044666.1|	-	0.17	11.6	0.0	0.3	10.8	0.0	1.3	1	0	0	1	1	1	0	Part	of	AAA	domain
HTH_38	PF13936.1	gi|313122744|ref|YP_004044670.1|	-	0.00029	20.3	0.0	0.00046	19.6	0.0	1.4	1	0	0	1	1	1	1	Helix-turn-helix	domain
HTH_23	PF13384.1	gi|313122744|ref|YP_004044670.1|	-	0.028	14.0	0.1	0.11	12.2	0.1	1.9	1	1	0	1	1	1	0	Homeodomain-like	domain
Terminase_5	PF06056.7	gi|313122744|ref|YP_004044670.1|	-	0.045	13.3	0.1	0.097	12.2	0.0	1.6	2	0	0	2	2	2	0	Putative	ATPase	subunit	of	terminase	(gpP-like)
Plectin	PF00681.15	gi|313122744|ref|YP_004044670.1|	-	0.13	11.7	0.0	0.3	10.6	0.0	1.7	1	1	0	1	1	1	0	Plectin	repeat
UvrD_C	PF13361.1	gi|313122747|ref|YP_004044673.1|	-	1e-09	38.3	0.0	7e-08	32.3	0.0	2.1	2	0	0	2	2	2	1	UvrD-like	helicase	C-terminal	domain
UvrD_C_2	PF13538.1	gi|313122747|ref|YP_004044673.1|	-	1.8e-08	34.4	0.0	3.8e-08	33.3	0.0	1.6	1	0	0	1	1	1	1	UvrD-like	helicase	C-terminal	domain
Viral_helicase1	PF01443.13	gi|313122747|ref|YP_004044673.1|	-	8.6e-07	28.7	0.0	0.042	13.3	0.0	2.9	3	0	0	3	3	3	2	Viral	(Superfamily	1)	RNA	helicase
UvrD-helicase	PF00580.16	gi|313122747|ref|YP_004044673.1|	-	1.6e-06	27.6	0.0	0.02	14.1	0.0	2.6	2	1	0	2	2	2	2	UvrD/REP	helicase	N-terminal	domain
AAA_19	PF13245.1	gi|313122747|ref|YP_004044673.1|	-	0.00025	20.7	0.0	0.0018	17.9	0.0	2.4	2	0	0	2	2	2	1	Part	of	AAA	domain
AAA_30	PF13604.1	gi|313122747|ref|YP_004044673.1|	-	0.00064	19.3	0.0	0.12	11.8	0.0	2.3	2	0	0	2	2	2	1	AAA	domain
AAA_22	PF13401.1	gi|313122747|ref|YP_004044673.1|	-	0.0089	16.1	0.0	5.9	7.0	0.0	2.7	2	0	0	2	2	2	2	AAA	domain
AAA_16	PF13191.1	gi|313122747|ref|YP_004044673.1|	-	0.058	13.3	0.1	1.1	9.1	0.0	2.9	3	1	1	4	4	4	0	AAA	ATPase	domain
AAA	PF00004.24	gi|313122747|ref|YP_004044673.1|	-	0.18	11.9	0.0	1.3	9.2	0.0	2.2	2	0	0	2	2	2	0	ATPase	family	associated	with	various	cellular	activities	(AAA)
RuvB_N	PF05496.7	gi|313122747|ref|YP_004044673.1|	-	0.21	10.6	0.1	3.7	6.5	0.0	2.2	2	0	0	2	2	2	0	Holliday	junction	DNA	helicase	ruvB	N-terminus
zf-CHC2	PF01807.15	gi|313122748|ref|YP_004044674.1|	-	0.18	11.3	0.0	0.34	10.4	0.0	1.4	1	0	0	1	1	1	0	CHC2	zinc	finger
Phage_integrase	PF00589.17	gi|313122749|ref|YP_004044675.1|	-	5.2e-14	52.2	0.3	2.9e-13	49.8	0.2	1.9	1	1	0	1	1	1	1	Phage	integrase	family
Phage_integrase	PF00589.17	gi|313122750|ref|YP_004044676.1|	-	3e-10	40.0	0.0	1.5e-09	37.7	0.0	1.9	1	1	0	1	1	1	1	Phage	integrase	family
zf-primase	PF09329.6	gi|313122750|ref|YP_004044676.1|	-	1.1e-05	24.8	2.5	0.00089	18.8	0.4	2.4	2	0	0	2	2	2	2	Primase	zinc	finger
Prok-RING_1	PF14446.1	gi|313122753|ref|YP_004044679.1|	-	0.048	13.3	1.6	0.074	12.7	1.1	1.2	1	0	0	1	1	1	0	Prokaryotic	RING	finger	family	1
Phage_integrase	PF00589.17	gi|313122755|ref|YP_004044681.1|	-	4.4e-26	91.5	0.0	5.9e-26	91.1	0.0	1.2	1	0	0	1	1	1	1	Phage	integrase	family
RHH_1	PF01402.16	gi|313122756|ref|YP_004044682.1|	-	0.015	15.2	0.0	0.03	14.2	0.0	1.6	1	0	0	1	1	1	0	Ribbon-helix-helix	protein,	copG	family
Plasmid_stabil	PF05016.9	gi|313122757|ref|YP_004044683.1|	-	4.3e-06	27.0	0.1	5.7e-06	26.6	0.1	1.2	1	0	0	1	1	1	1	Plasmid	stabilisation	system	protein
DUF217	PF02697.9	gi|313122758|ref|YP_004044684.1|	-	0.0016	18.6	0.1	0.0032	17.6	0.0	1.5	1	0	0	1	1	1	1	Uncharacterized	ACR,	COG1753
DUF2360	PF10152.4	gi|313122758|ref|YP_004044684.1|	-	0.084	13.1	0.5	0.1	12.9	0.3	1.2	1	0	0	1	1	1	0	Predicted	coiled-coil	domain-containing	protein	(DUF2360)
RHH_1	PF01402.16	gi|313122758|ref|YP_004044684.1|	-	0.085	12.7	0.6	0.56	10.1	0.2	2.3	2	1	0	2	2	2	0	Ribbon-helix-helix	protein,	copG	family
Antitoxin-MazE	PF04014.13	gi|313122761|ref|YP_004044687.1|	-	0.00026	20.6	0.0	0.00037	20.1	0.0	1.2	1	0	0	1	1	1	1	Antidote-toxin	recognition	MazE
TOBE	PF03459.12	gi|313122761|ref|YP_004044687.1|	-	0.025	14.6	0.0	0.029	14.4	0.0	1.2	1	0	0	1	1	1	0	TOBE	domain