# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- BCCT PF02028.17 gi|313122550|ref|YP_004044477.1| - 2.4e-115 385.8 50.5 2.8e-115 385.5 50.5 1.0 1 0 0 1 1 1 1 BCCT, betaine/carnitine/choline family transporter Ninjurin PF04923.12 gi|313122550|ref|YP_004044477.1| - 0.081 12.9 0.9 4.4 7.3 0.0 3.4 3 0 0 3 3 3 0 Ninjurin DUF1360 PF07098.11 gi|313122550|ref|YP_004044477.1| - 0.09 12.7 2.7 0.26 11.2 0.2 2.9 1 1 0 2 2 2 0 Protein of unknown function (DUF1360) BPD_transp_1 PF00528.22 gi|313122553|ref|YP_004044480.1| - 9e-15 54.9 15.0 9e-15 54.9 15.0 2.2 1 1 1 2 2 2 1 Binding-protein-dependent transport system inner membrane component Herpes_UL49_5 PF05702.11 gi|313122553|ref|YP_004044480.1| - 0.021 14.9 2.5 0.088 12.9 0.5 2.4 2 0 0 2 2 2 0 Herpesvirus UL49.5 envelope/tegument protein TraS PF10624.9 gi|313122553|ref|YP_004044480.1| - 0.76 9.7 4.2 1.8 8.5 0.7 2.2 2 0 0 2 2 2 0 Plasmid conjugative transfer entry exclusion protein TraS BPD_transp_1 PF00528.22 gi|313122554|ref|YP_004044481.1| - 6.2e-08 32.6 23.9 6.2e-08 32.6 23.9 2.4 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DUF1101 PF06503.11 gi|313122554|ref|YP_004044481.1| - 0.018 14.3 0.1 0.025 13.9 0.1 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF1101) ABC_tran PF00005.27 gi|313122555|ref|YP_004044482.1| - 5.8e-37 127.3 0.0 1e-36 126.4 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|313122555|ref|YP_004044482.1| - 2.2e-10 40.9 0.1 2.4e-05 24.3 0.1 2.3 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system SMC_N PF02463.19 gi|313122555|ref|YP_004044482.1| - 9.7e-06 25.2 0.0 0.011 15.2 0.0 2.2 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_22 PF13401.6 gi|313122555|ref|YP_004044482.1| - 2.4e-05 24.6 0.1 7.4e-05 23.0 0.1 1.9 1 1 1 2 2 2 1 AAA domain AAA PF00004.29 gi|313122555|ref|YP_004044482.1| - 0.0001 22.8 0.0 0.00067 20.1 0.0 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_15 PF13175.6 gi|313122555|ref|YP_004044482.1| - 0.00017 21.5 0.0 0.17 11.5 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain AAA_16 PF13191.6 gi|313122555|ref|YP_004044482.1| - 0.0004 20.8 0.2 0.00078 19.9 0.2 1.6 1 1 0 1 1 1 1 AAA ATPase domain RsgA_GTPase PF03193.16 gi|313122555|ref|YP_004044482.1| - 0.00091 19.2 0.0 0.0015 18.5 0.0 1.3 1 0 0 1 1 1 1 RsgA GTPase Rad17 PF03215.15 gi|313122555|ref|YP_004044482.1| - 0.0018 18.2 0.0 0.0028 17.6 0.0 1.3 1 0 0 1 1 1 1 Rad17 P-loop domain NACHT PF05729.12 gi|313122555|ref|YP_004044482.1| - 0.005 16.8 0.4 0.074 13.0 0.0 2.2 2 0 0 2 2 2 1 NACHT domain AAA_14 PF13173.6 gi|313122555|ref|YP_004044482.1| - 0.0068 16.4 0.0 0.019 15.0 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_28 PF13521.6 gi|313122555|ref|YP_004044482.1| - 0.0093 16.2 0.2 0.023 15.0 0.2 1.6 1 0 0 1 1 1 1 AAA domain ATPase_2 PF01637.18 gi|313122555|ref|YP_004044482.1| - 0.013 15.5 0.0 0.019 14.9 0.0 1.3 1 0 0 1 1 1 0 ATPase domain predominantly from Archaea AAA_29 PF13555.6 gi|313122555|ref|YP_004044482.1| - 0.015 15.0 0.0 0.036 13.8 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|313122555|ref|YP_004044482.1| - 0.017 15.6 0.1 0.026 15.0 0.1 1.4 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.22 gi|313122555|ref|YP_004044482.1| - 0.018 15.4 0.0 0.039 14.4 0.0 1.5 1 0 0 1 1 1 0 RNA helicase AAA_33 PF13671.6 gi|313122555|ref|YP_004044482.1| - 0.019 15.1 0.1 0.036 14.2 0.1 1.6 1 1 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|313122555|ref|YP_004044482.1| - 0.024 14.3 0.0 0.047 13.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_25 PF13481.6 gi|313122555|ref|YP_004044482.1| - 0.027 14.0 0.0 0.066 12.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_18 PF13238.6 gi|313122555|ref|YP_004044482.1| - 0.04 14.5 0.0 0.095 13.2 0.0 1.7 1 1 0 1 1 1 0 AAA domain TOBE_2 PF08402.10 gi|313122555|ref|YP_004044482.1| - 0.052 13.7 0.1 0.18 12.0 0.1 2.0 2 0 0 2 2 1 0 TOBE domain Mg_chelatase PF01078.21 gi|313122555|ref|YP_004044482.1| - 0.053 12.9 0.2 0.59 9.5 0.1 2.0 1 1 1 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_5 PF07728.14 gi|313122555|ref|YP_004044482.1| - 0.059 13.4 0.0 0.18 11.8 0.0 1.8 1 0 0 1 1 1 0 AAA domain (dynein-related subfamily) Zeta_toxin PF06414.12 gi|313122555|ref|YP_004044482.1| - 0.11 11.7 0.0 0.21 10.8 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA_24 PF13479.6 gi|313122555|ref|YP_004044482.1| - 0.14 11.9 0.0 0.23 11.2 0.0 1.3 1 0 0 1 1 1 0 AAA domain MobB PF03205.14 gi|313122555|ref|YP_004044482.1| - 0.17 11.8 0.0 0.37 10.7 0.0 1.6 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B PduV-EutP PF10662.9 gi|313122555|ref|YP_004044482.1| - 0.22 11.3 0.2 0.6 9.8 0.0 1.8 2 0 0 2 2 2 0 Ethanolamine utilisation - propanediol utilisation NB-ARC PF00931.22 gi|313122555|ref|YP_004044482.1| - 0.22 10.7 0.9 0.36 10.0 0.0 1.7 2 0 0 2 2 2 0 NB-ARC domain SBP_bac_8 PF13416.6 gi|313122556|ref|YP_004044483.1| - 1.9e-10 41.0 6.9 2.9e-10 40.4 6.9 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.6 gi|313122556|ref|YP_004044483.1| - 9.3e-07 28.5 1.2 2e-06 27.4 0.7 1.7 1 1 1 2 2 2 1 Bacterial extracellular solute-binding protein LPD16 PF18830.1 gi|313122556|ref|YP_004044483.1| - 0.72 9.8 6.2 7.1 6.7 0.1 2.3 2 0 0 2 2 2 0 Large polyvalent protein-associated domain 16 Fe-ADH PF00465.19 gi|313122557|ref|YP_004044484.1| - 3.5e-115 384.7 2.4 3.9e-115 384.5 2.4 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.6 gi|313122557|ref|YP_004044484.1| - 7.8e-17 61.8 2.1 2e-09 37.6 0.1 2.2 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase DUF1485 PF07364.12 gi|313122558|ref|YP_004044485.1| - 7.2e-88 294.6 1.6 9.4e-88 294.2 1.6 1.2 1 0 0 1 1 1 1 Metallopeptidase family M81 MlrC_C PF07171.12 gi|313122558|ref|YP_004044485.1| - 2.6e-60 203.6 0.1 3.9e-60 203.0 0.1 1.3 1 0 0 1 1 1 1 MlrC C-terminus Aldedh PF00171.22 gi|313122559|ref|YP_004044486.1| - 4.7e-158 526.5 0.4 5.7e-158 526.2 0.4 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family LuxC PF05893.14 gi|313122559|ref|YP_004044486.1| - 0.0046 16.0 0.0 0.0097 15.0 0.0 1.5 2 0 0 2 2 2 1 Acyl-CoA reductase (LuxC) Gln-synt_C PF00120.24 gi|313122560|ref|YP_004044487.1| - 1.1e-103 346.8 0.0 3e-103 345.4 0.0 1.6 1 1 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N_2 PF16952.5 gi|313122560|ref|YP_004044487.1| - 2.5e-10 40.2 0.0 4.4e-10 39.4 0.0 1.4 1 0 0 1 1 1 1 Glutamine synthetase N-terminal domain Gln-synt_N PF03951.19 gi|313122560|ref|YP_004044487.1| - 4.4e-05 23.1 0.0 0.0047 16.6 0.0 2.3 2 0 0 2 2 2 2 Glutamine synthetase, beta-Grasp domain PhoD PF09423.10 gi|313122562|ref|YP_004044489.1| - 2.4e-51 174.8 0.0 4.6e-51 173.9 0.0 1.4 1 0 0 1 1 1 1 PhoD-like phosphatase PhoD_N PF16655.5 gi|313122562|ref|YP_004044489.1| - 2.7e-18 66.3 4.1 6.4e-18 65.1 4.1 1.7 1 0 0 1 1 1 1 PhoD-like phosphatase, N-terminal domain Laminin_B PF00052.18 gi|313122562|ref|YP_004044489.1| - 4.1e-18 65.6 0.0 1.1e-17 64.2 0.0 1.7 1 0 0 1 1 1 1 Laminin B (Domain IV) Pur_ac_phosph_N PF16656.5 gi|313122562|ref|YP_004044489.1| - 7.2e-09 36.1 6.5 2.7e-08 34.3 6.5 2.0 1 0 0 1 1 1 1 Purple acid Phosphatase, N-terminal domain fn3 PF00041.21 gi|313122562|ref|YP_004044489.1| - 0.053 13.9 1.8 0.16 12.3 1.0 2.3 2 0 0 2 2 2 0 Fibronectin type III domain TAT_signal PF10518.9 gi|313122562|ref|YP_004044489.1| - 0.058 13.3 0.5 0.14 12.1 0.5 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Beta_helix PF13229.6 gi|313122564|ref|YP_004044491.1| - 1.4e-19 70.5 35.9 4.1e-09 36.5 5.7 3.4 1 1 2 3 3 3 3 Right handed beta helix region Pectate_lyase_3 PF12708.7 gi|313122564|ref|YP_004044491.1| - 2.4e-16 60.2 3.5 2.4e-16 60.2 3.5 3.7 1 1 3 4 4 4 2 Pectate lyase superfamily protein NosD PF05048.13 gi|313122564|ref|YP_004044491.1| - 2.4e-11 43.4 23.7 4.7e-05 22.8 1.3 3.9 1 1 2 3 3 3 3 Periplasmic copper-binding protein (NosD) End_N_terminal PF12218.8 gi|313122564|ref|YP_004044491.1| - 0.019 14.6 0.2 0.072 12.8 0.0 2.1 2 0 0 2 2 2 0 N terminal extension of bacteriophage endosialidase HTH_20 PF12840.7 gi|313122567|ref|YP_004044494.1| - 0.12 12.4 0.5 0.32 11.1 0.5 1.8 1 1 0 1 1 1 0 Helix-turn-helix domain Thymopoietin PF08198.11 gi|313122567|ref|YP_004044494.1| - 0.14 11.8 0.0 0.36 10.5 0.0 1.7 2 0 0 2 2 2 0 Thymopoietin protein Usp PF00582.26 gi|313122569|ref|YP_004044496.1| - 2.5e-26 92.9 1.2 2.9e-26 92.7 1.2 1.0 1 0 0 1 1 1 1 Universal stress protein family baeRF_family10 PF18854.1 gi|313122569|ref|YP_004044496.1| - 0.0025 18.1 1.2 0.012 15.9 1.2 1.9 1 1 0 1 1 1 1 Bacterial archaeo-eukaryotic release factor family 10 ATP-grasp_5 PF13549.6 gi|313122569|ref|YP_004044496.1| - 0.023 14.1 0.0 0.028 13.9 0.0 1.1 1 0 0 1 1 1 0 ATP-grasp domain PHO4 PF01384.20 gi|313122570|ref|YP_004044497.1| - 2e-40 138.9 31.3 2.7e-40 138.4 31.3 1.2 1 0 0 1 1 1 1 Phosphate transporter family PQQ_2 PF13360.6 gi|313122571|ref|YP_004044498.1| - 1.8e-39 135.7 12.5 1.4e-26 93.5 6.1 2.2 1 1 1 2 2 2 2 PQQ-like domain PQQ_3 PF13570.6 gi|313122571|ref|YP_004044498.1| - 4.7e-36 122.4 16.6 1.4e-06 28.6 0.2 8.1 7 1 1 8 8 8 7 PQQ-like domain PQQ PF01011.21 gi|313122571|ref|YP_004044498.1| - 3e-26 90.1 4.2 8.9e-05 22.2 0.1 7.3 8 0 0 8 8 8 5 PQQ enzyme repeat CBM_6 PF03422.15 gi|313122571|ref|YP_004044498.1| - 0.013 15.8 0.4 0.027 14.8 0.4 1.5 1 0 0 1 1 1 0 Carbohydrate binding module (family 6) Arylsulfotrans PF05935.11 gi|313122571|ref|YP_004044498.1| - 0.055 12.4 0.0 0.11 11.4 0.0 1.4 1 1 0 1 1 1 0 Arylsulfotransferase (ASST) Pentapeptide_3 PF13576.6 gi|313122572|ref|YP_004044499.1| - 7.8e-10 38.8 38.6 0.0097 16.0 14.3 6.3 3 1 4 7 7 7 6 Pentapeptide repeats (9 copies) Pentapeptide PF00805.22 gi|313122573|ref|YP_004044500.1| - 3.3e-07 29.8 2.6 5.9e-07 29.0 0.6 2.1 2 0 0 2 2 2 1 Pentapeptide repeats (8 copies) YqjK PF13997.6 gi|313122573|ref|YP_004044500.1| - 0.079 13.2 1.7 0.13 12.5 0.2 2.0 2 0 0 2 2 2 0 YqjK-like protein Aldedh PF00171.22 gi|313122574|ref|YP_004044501.1| - 8.6e-172 571.8 0.2 9.8e-172 571.6 0.2 1.0 1 0 0 1 1 1 1 Aldehyde dehydrogenase family TraB PF01963.17 gi|313122575|ref|YP_004044502.1| - 0.0078 16.1 0.4 0.54 10.1 0.4 2.5 1 1 0 1 1 1 1 TraB family TAT_signal PF10518.9 gi|313122575|ref|YP_004044502.1| - 0.18 11.7 3.9 0.32 10.9 3.9 1.4 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence IucA_IucC PF04183.12 gi|313122577|ref|YP_004044504.1| - 2.7e-56 190.8 0.0 4.1e-56 190.2 0.0 1.3 1 0 0 1 1 1 1 IucA / IucC family FhuF PF06276.12 gi|313122577|ref|YP_004044504.1| - 1.7e-31 109.9 0.0 5.5e-31 108.2 0.0 1.9 2 0 0 2 2 2 1 Ferric iron reductase FhuF-like transporter Mus7 PF09462.10 gi|313122577|ref|YP_004044504.1| - 0.037 12.9 0.0 0.05 12.5 0.0 1.1 1 0 0 1 1 1 0 Mus7/MMS22 family ABC_membrane PF00664.23 gi|313122578|ref|YP_004044505.1| - 3.1e-41 141.8 1.0 4e-41 141.5 1.0 1.1 1 0 0 1 1 1 1 ABC transporter transmembrane region ABC_tran PF00005.27 gi|313122578|ref|YP_004044505.1| - 1.4e-34 119.5 0.0 2.9e-34 118.5 0.0 1.5 1 0 0 1 1 1 1 ABC transporter AAA_16 PF13191.6 gi|313122578|ref|YP_004044505.1| - 4.3e-05 24.0 4.0 0.00033 21.1 4.0 2.1 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|313122578|ref|YP_004044505.1| - 0.00035 20.9 0.4 0.0027 18.0 0.3 2.4 1 1 0 1 1 1 1 AAA domain AAA PF00004.29 gi|313122578|ref|YP_004044505.1| - 0.00089 19.7 0.0 0.016 15.6 0.0 2.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) Zeta_toxin PF06414.12 gi|313122578|ref|YP_004044505.1| - 0.0012 18.2 0.1 0.0029 16.9 0.1 1.6 1 0 0 1 1 1 1 Zeta toxin AAA_5 PF07728.14 gi|313122578|ref|YP_004044505.1| - 0.0015 18.6 0.2 0.01 15.8 0.2 2.3 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_24 PF13479.6 gi|313122578|ref|YP_004044505.1| - 0.0019 18.0 0.0 0.0034 17.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_33 PF13671.6 gi|313122578|ref|YP_004044505.1| - 0.003 17.7 0.0 0.0098 16.1 0.0 1.9 2 0 0 2 2 1 1 AAA domain RsgA_GTPase PF03193.16 gi|313122578|ref|YP_004044505.1| - 0.0035 17.3 0.0 0.0089 15.9 0.0 1.6 1 0 0 1 1 1 1 RsgA GTPase AAA_18 PF13238.6 gi|313122578|ref|YP_004044505.1| - 0.0039 17.7 0.0 0.015 15.9 0.0 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.19 gi|313122578|ref|YP_004044505.1| - 0.0065 15.9 0.1 0.21 11.0 0.1 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain NTPase_1 PF03266.15 gi|313122578|ref|YP_004044505.1| - 0.0077 16.2 0.2 1.2 9.1 0.0 2.4 1 1 1 2 2 2 1 NTPase TsaE PF02367.17 gi|313122578|ref|YP_004044505.1| - 0.0095 15.9 0.0 0.58 10.2 0.0 2.4 2 0 0 2 2 2 1 Threonylcarbamoyl adenosine biosynthesis protein TsaE APS_kinase PF01583.20 gi|313122578|ref|YP_004044505.1| - 0.016 15.1 0.0 0.037 13.9 0.0 1.6 1 0 0 1 1 1 0 Adenylylsulphate kinase AAA_29 PF13555.6 gi|313122578|ref|YP_004044505.1| - 0.028 14.2 0.0 0.074 12.8 0.0 1.7 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_30 PF13604.6 gi|313122578|ref|YP_004044505.1| - 0.03 14.1 3.3 0.16 11.7 3.3 2.1 1 1 0 1 1 1 0 AAA domain IstB_IS21 PF01695.17 gi|313122578|ref|YP_004044505.1| - 0.036 13.8 0.1 0.21 11.3 0.0 2.2 2 0 0 2 2 2 0 IstB-like ATP binding protein AAA_21 PF13304.6 gi|313122578|ref|YP_004044505.1| - 0.036 13.9 0.1 0.35 10.6 0.0 2.1 1 1 1 2 2 2 0 AAA domain, putative AbiEii toxin, Type IV TA system T2SSE PF00437.20 gi|313122578|ref|YP_004044505.1| - 0.055 12.5 0.0 0.28 10.2 0.0 2.0 2 0 0 2 2 2 0 Type II/IV secretion system protein Cytidylate_kin PF02224.18 gi|313122578|ref|YP_004044505.1| - 0.061 13.0 0.0 0.12 12.1 0.0 1.5 1 0 0 1 1 1 0 Cytidylate kinase DUF87 PF01935.17 gi|313122578|ref|YP_004044505.1| - 0.062 13.4 0.2 0.17 12.0 0.1 1.7 2 0 0 2 2 2 0 Helicase HerA, central domain Guanylate_kin PF00625.21 gi|313122578|ref|YP_004044505.1| - 0.18 11.5 0.0 0.35 10.5 0.0 1.4 1 0 0 1 1 1 0 Guanylate kinase AAA_25 PF13481.6 gi|313122578|ref|YP_004044505.1| - 0.18 11.4 1.5 0.93 9.0 0.1 2.5 2 0 0 2 2 2 0 AAA domain DEAD PF00270.29 gi|313122578|ref|YP_004044505.1| - 0.2 11.4 0.9 2.6 7.8 0.9 2.1 1 1 0 1 1 1 0 DEAD/DEAH box helicase IucA_IucC PF04183.12 gi|313122580|ref|YP_004044507.1| - 2.9e-71 239.8 0.0 4e-71 239.3 0.0 1.2 1 0 0 1 1 1 1 IucA / IucC family FhuF PF06276.12 gi|313122580|ref|YP_004044507.1| - 1.3e-37 129.7 0.4 3e-37 128.5 0.4 1.7 1 0 0 1 1 1 1 Ferric iron reductase FhuF-like transporter Gln-synt_C PF00120.24 gi|313122581|ref|YP_004044508.1| - 4.3e-98 328.5 0.0 5.1e-98 328.3 0.0 1.1 1 0 0 1 1 1 1 Glutamine synthetase, catalytic domain Gln-synt_N_2 PF16952.5 gi|313122581|ref|YP_004044508.1| - 6.2e-14 51.7 0.0 1.2e-13 50.8 0.0 1.4 1 0 0 1 1 1 1 Glutamine synthetase N-terminal domain Gln-synt_N PF03951.19 gi|313122581|ref|YP_004044508.1| - 0.038 13.7 0.0 0.96 9.2 0.0 2.9 3 0 0 3 3 3 0 Glutamine synthetase, beta-Grasp domain Aminotran_3 PF00202.21 gi|313122582|ref|YP_004044509.1| - 1.4e-89 300.6 0.0 1.7e-89 300.3 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class-III Pyridoxal_deC PF00282.19 gi|313122583|ref|YP_004044510.1| - 1e-59 202.2 0.0 1.2e-59 201.9 0.0 1.0 1 0 0 1 1 1 1 Pyridoxal-dependent decarboxylase conserved domain Beta_elim_lyase PF01212.21 gi|313122583|ref|YP_004044510.1| - 8.3e-05 22.0 0.0 0.00014 21.3 0.0 1.3 1 1 0 1 1 1 1 Beta-eliminating lyase Aminotran_5 PF00266.19 gi|313122583|ref|YP_004044510.1| - 0.0011 18.0 0.0 0.0039 16.2 0.0 1.8 1 1 0 1 1 1 1 Aminotransferase class-V IucA_IucC PF04183.12 gi|313122584|ref|YP_004044511.1| - 1.3e-58 198.4 0.0 1.9e-58 197.9 0.0 1.2 1 0 0 1 1 1 1 IucA / IucC family FhuF PF06276.12 gi|313122584|ref|YP_004044511.1| - 7.2e-31 107.8 0.0 1.3e-30 107.0 0.0 1.4 1 0 0 1 1 1 1 Ferric iron reductase FhuF-like transporter RraA-like PF03737.15 gi|313122585|ref|YP_004044512.1| - 2e-35 122.2 2.1 2.5e-35 121.8 2.1 1.1 1 0 0 1 1 1 1 Aldolase/RraA PCP_red PF08369.10 gi|313122585|ref|YP_004044512.1| - 0.0038 17.4 0.1 0.93 9.8 0.0 2.5 2 0 0 2 2 2 2 Proto-chlorophyllide reductase 57 kD subunit PALP PF00291.25 gi|313122585|ref|YP_004044512.1| - 0.041 13.3 0.5 0.054 12.9 0.5 1.2 1 0 0 1 1 1 0 Pyridoxal-phosphate dependent enzyme DDE_Tnp_1 PF01609.21 gi|313122586|ref|YP_004044513.1| - 2.6e-09 37.1 0.0 4.5e-09 36.3 0.0 1.3 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_4 PF13701.6 gi|313122586|ref|YP_004044513.1| - 0.006 14.9 0.2 0.13 10.5 0.2 2.3 1 1 0 1 1 1 1 Transposase DDE domain group 1 RNA_pol_Rpb2_5 PF04567.17 gi|313122588|ref|YP_004044515.1| - 0.029 14.9 0.1 0.049 14.2 0.0 1.6 1 1 0 1 1 1 0 RNA polymerase Rpb2, domain 5 TAT_signal PF10518.9 gi|313122589|ref|YP_004044516.1| - 0.0074 16.1 0.1 0.018 14.9 0.1 1.7 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence DUF4179 PF13786.6 gi|313122589|ref|YP_004044516.1| - 0.044 14.3 0.1 0.11 13.0 0.1 1.6 1 0 0 1 1 1 0 Domain of unknown function (DUF4179) UCR_Fe-S_N PF10399.9 gi|313122589|ref|YP_004044516.1| - 0.054 12.9 0.0 0.14 11.6 0.0 1.7 1 0 0 1 1 1 0 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal PepSY_2 PF13670.6 gi|313122589|ref|YP_004044516.1| - 0.13 12.3 0.1 0.33 11.0 0.1 1.7 1 0 0 1 1 1 0 Peptidase propeptide and YPEB domain Cadherin PF00028.17 gi|313122590|ref|YP_004044517.1| - 0.0019 18.6 1.0 0.0031 17.9 1.0 1.3 1 0 0 1 1 1 1 Cadherin domain TspO_MBR PF03073.15 gi|313122591|ref|YP_004044518.1| - 0.58 10.2 10.4 1.2 9.1 10.1 1.6 1 1 1 2 2 2 0 TspO/MBR family Trypsin PF00089.26 gi|313122592|ref|YP_004044519.1| - 0.00051 19.9 1.1 0.0008 19.3 1.1 1.3 1 0 0 1 1 1 1 Trypsin MarR_2 PF12802.7 gi|313122594|ref|YP_004044521.1| - 3e-07 30.2 0.0 4.8e-07 29.6 0.0 1.2 1 0 0 1 1 1 1 MarR family TrmB PF01978.19 gi|313122594|ref|YP_004044521.1| - 5.6e-05 22.9 0.0 8.2e-05 22.4 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HrcA_DNA-bdg PF03444.15 gi|313122594|ref|YP_004044521.1| - 0.00048 19.7 0.0 0.00071 19.2 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix transcription repressor, HrcA DNA-binding MarR PF01047.22 gi|313122594|ref|YP_004044521.1| - 0.00078 19.3 0.0 0.0014 18.5 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_Crp_2 PF13545.6 gi|313122594|ref|YP_004044521.1| - 0.00092 19.2 0.0 0.0012 18.7 0.0 1.4 1 1 0 1 1 1 1 Crp-like helix-turn-helix domain DUF4423 PF14394.6 gi|313122594|ref|YP_004044521.1| - 0.0014 18.3 0.0 0.0057 16.4 0.0 1.8 2 0 0 2 2 2 1 Domain of unknown function (DUF4423) GntR PF00392.21 gi|313122594|ref|YP_004044521.1| - 0.0022 17.6 0.1 0.0038 16.9 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_24 PF13412.6 gi|313122594|ref|YP_004044521.1| - 0.0049 16.4 0.1 0.0076 15.8 0.1 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding Sigma70_r4_2 PF08281.12 gi|313122594|ref|YP_004044521.1| - 0.0085 15.8 0.0 0.015 14.9 0.0 1.5 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_5 PF01022.20 gi|313122594|ref|YP_004044521.1| - 0.0099 15.7 0.0 0.014 15.2 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Rrf2 PF02082.20 gi|313122594|ref|YP_004044521.1| - 0.011 16.1 0.0 0.015 15.6 0.0 1.2 1 0 0 1 1 1 0 Transcriptional regulator Fe_dep_repress PF01325.19 gi|313122594|ref|YP_004044521.1| - 0.014 15.5 0.0 0.026 14.7 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain PaaX PF07848.12 gi|313122594|ref|YP_004044521.1| - 0.016 15.4 0.0 0.025 14.8 0.0 1.3 1 0 0 1 1 1 0 PaaX-like protein HTH_IclR PF09339.10 gi|313122594|ref|YP_004044521.1| - 0.032 14.0 0.0 0.054 13.3 0.0 1.4 1 0 0 1 1 1 0 IclR helix-turn-helix domain HTH_11 PF08279.12 gi|313122594|ref|YP_004044521.1| - 0.15 12.0 0.0 0.26 11.3 0.0 1.3 1 0 0 1 1 1 0 HTH domain DUF2309 PF10070.9 gi|313122595|ref|YP_004044522.1| - 6.4e-262 871.3 0.0 7.3e-262 871.1 0.0 1.0 1 0 0 1 1 1 1 Uncharacterized protein conserved in bacteria (DUF2309) DUF883 PF05957.13 gi|313122595|ref|YP_004044522.1| - 5.8 7.6 7.5 1.3 9.7 0.1 3.1 3 0 0 3 3 3 0 Bacterial protein of unknown function (DUF883) Proton_antipo_M PF00361.20 gi|313122596|ref|YP_004044523.1| - 1.1e-28 100.2 9.9 1.1e-28 100.2 9.9 1.7 1 1 1 2 2 2 1 Proton-conducting membrane transporter Proton_antipo_N PF00662.20 gi|313122597|ref|YP_004044524.1| - 7e-11 42.0 1.0 7e-11 42.0 1.0 2.3 3 0 0 3 3 3 1 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ThrE PF06738.12 gi|313122597|ref|YP_004044524.1| - 0.46 9.8 8.4 0.033 13.6 3.7 1.5 2 0 0 2 2 2 0 Putative threonine/serine exporter NDUF_B12 PF08122.12 gi|313122597|ref|YP_004044524.1| - 6.3 6.9 8.6 0.35 10.9 1.4 2.6 1 1 3 4 4 4 0 NADH-ubiquinone oxidoreductase B12 subunit family DUF2866 PF11065.8 gi|313122598|ref|YP_004044525.1| - 0.074 13.1 0.0 0.17 11.9 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF2866) Amidohydro_1 PF01979.20 gi|313122599|ref|YP_004044526.1| - 3.9e-30 105.3 0.1 5.7e-28 98.2 0.1 2.7 1 1 0 1 1 1 1 Amidohydrolase family A_deaminase PF00962.22 gi|313122599|ref|YP_004044526.1| - 7.9e-10 38.6 0.0 1.1e-09 38.0 0.0 1.1 1 0 0 1 1 1 1 Adenosine/AMP deaminase Amidohydro_3 PF07969.11 gi|313122599|ref|YP_004044526.1| - 2.7e-07 30.4 7.6 6.1e-07 29.3 2.2 2.8 1 1 1 2 2 2 2 Amidohydrolase family HTH_24 PF13412.6 gi|313122600|ref|YP_004044527.1| - 3.2e-15 55.4 0.2 5e-15 54.8 0.2 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.6 gi|313122600|ref|YP_004044527.1| - 5.4e-13 48.5 0.7 1.1e-12 47.5 0.7 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_11 PF08279.12 gi|313122600|ref|YP_004044527.1| - 1.3e-07 31.4 0.0 2.2e-07 30.7 0.0 1.4 1 0 0 1 1 1 1 HTH domain MarR_2 PF12802.7 gi|313122600|ref|YP_004044527.1| - 3.9e-06 26.7 0.0 8.8e-06 25.5 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.10 gi|313122600|ref|YP_004044527.1| - 6.2e-06 25.9 0.0 1.2e-05 25.0 0.0 1.5 1 0 0 1 1 1 1 IclR helix-turn-helix domain Fe_dep_repress PF01325.19 gi|313122600|ref|YP_004044527.1| - 8.9e-06 25.8 0.0 2e-05 24.7 0.0 1.6 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain Rrf2 PF02082.20 gi|313122600|ref|YP_004044527.1| - 5e-05 23.6 0.0 0.00017 21.9 0.0 1.7 2 0 0 2 2 2 1 Transcriptional regulator Sigma70_r4_2 PF08281.12 gi|313122600|ref|YP_004044527.1| - 5.7e-05 22.7 0.0 0.0001 21.9 0.0 1.4 1 0 0 1 1 1 1 Sigma-70, region 4 HTH_5 PF01022.20 gi|313122600|ref|YP_004044527.1| - 5.7e-05 22.9 0.0 0.00011 22.0 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.7 gi|313122600|ref|YP_004044527.1| - 9.8e-05 22.3 0.0 0.00024 21.1 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_DeoR PF08220.12 gi|313122600|ref|YP_004044527.1| - 0.0001 22.0 0.1 0.0018 18.0 0.0 2.2 2 0 0 2 2 2 1 DeoR-like helix-turn-helix domain HTH_Crp_2 PF13545.6 gi|313122600|ref|YP_004044527.1| - 0.00021 21.2 0.0 0.0004 20.3 0.0 1.4 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_28 PF13518.6 gi|313122600|ref|YP_004044527.1| - 0.00028 20.9 0.0 0.00053 20.1 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.22 gi|313122600|ref|YP_004044527.1| - 0.0027 17.6 0.0 0.0099 15.8 0.0 1.8 2 0 0 2 2 2 1 MarR family HTH_36 PF13730.6 gi|313122600|ref|YP_004044527.1| - 0.0056 16.6 0.0 0.0086 16.0 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain Put_DNA-bind_N PF06971.13 gi|313122600|ref|YP_004044527.1| - 0.006 16.6 0.0 0.013 15.5 0.0 1.4 1 0 0 1 1 1 1 Putative DNA-binding protein N-terminus HTH_23 PF13384.6 gi|313122600|ref|YP_004044527.1| - 0.0069 16.1 0.0 0.013 15.3 0.0 1.4 1 0 0 1 1 1 1 Homeodomain-like domain GntR PF00392.21 gi|313122600|ref|YP_004044527.1| - 0.0075 15.9 0.0 0.02 14.5 0.0 1.6 2 0 0 2 2 2 1 Bacterial regulatory proteins, gntR family HTH_Mga PF08280.11 gi|313122600|ref|YP_004044527.1| - 0.01 15.9 0.0 0.015 15.3 0.0 1.3 1 0 0 1 1 1 1 M protein trans-acting positive regulator (MGA) HTH domain HTH_10 PF04967.12 gi|313122600|ref|YP_004044527.1| - 0.019 14.7 0.1 0.034 14.0 0.1 1.3 1 0 0 1 1 1 0 HTH DNA binding domain HTH_12 PF08461.10 gi|313122600|ref|YP_004044527.1| - 0.021 14.8 0.1 0.07 13.1 0.1 2.0 1 1 0 1 1 1 0 Ribonuclease R winged-helix domain HTH_27 PF13463.6 gi|313122600|ref|YP_004044527.1| - 0.024 15.1 0.1 0.064 13.8 0.0 1.7 2 0 0 2 2 2 0 Winged helix DNA-binding domain HTH_Tnp_ISL3 PF13542.6 gi|313122600|ref|YP_004044527.1| - 0.028 13.8 0.1 0.071 12.5 0.0 1.7 2 0 0 2 2 2 0 Helix-turn-helix domain of transposase family ISL3 TrmB PF01978.19 gi|313122600|ref|YP_004044527.1| - 0.042 13.7 0.0 0.11 12.4 0.0 1.7 2 0 0 2 2 2 0 Sugar-specific transcriptional regulator TrmB HTH_29 PF13551.6 gi|313122600|ref|YP_004044527.1| - 0.056 13.5 0.0 0.093 12.8 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix HrcA_DNA-bdg PF03444.15 gi|313122600|ref|YP_004044527.1| - 0.067 12.8 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix transcription repressor, HrcA DNA-binding HTH_19 PF12844.7 gi|313122600|ref|YP_004044527.1| - 0.1 12.7 0.4 0.22 11.5 0.4 1.7 1 1 0 1 1 1 0 Helix-turn-helix domain Phage_antitermQ PF06530.12 gi|313122600|ref|YP_004044527.1| - 0.11 12.5 0.1 0.24 11.3 0.0 1.6 2 0 0 2 2 2 0 Phage antitermination protein Q HTH_1 PF00126.27 gi|313122600|ref|YP_004044527.1| - 0.16 12.0 0.0 0.32 11.0 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory helix-turn-helix protein, lysR family Peripla_BP_2 PF01497.18 gi|313122601|ref|YP_004044528.1| - 1.1e-09 38.3 0.5 1.1e-09 38.3 0.5 1.8 1 1 0 2 2 2 1 Periplasmic binding protein TauE PF01925.19 gi|313122602|ref|YP_004044529.1| - 2.7e-39 135.2 39.2 3.3e-39 134.9 39.2 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE CBS PF00571.28 gi|313122603|ref|YP_004044530.1| - 1.3e-09 38.3 1.4 0.00013 22.3 0.0 2.6 2 0 0 2 2 2 2 CBS domain HEPN_Swt1 PF18731.1 gi|313122603|ref|YP_004044530.1| - 0.0001 22.6 0.0 0.00019 21.8 0.0 1.5 1 0 0 1 1 1 1 Swt1-like HEPN LTD PF00932.19 gi|313122605|ref|YP_004044532.1| - 0.0027 18.0 0.0 0.0045 17.3 0.0 1.4 1 0 0 1 1 1 1 Lamin Tail Domain DUF3147 PF11345.8 gi|313122605|ref|YP_004044532.1| - 0.035 14.5 4.5 0.035 14.5 4.5 2.5 3 0 0 3 3 3 0 Protein of unknown function (DUF3147) Phage_holin_2_4 PF16082.5 gi|313122605|ref|YP_004044532.1| - 0.25 11.1 8.7 0.37 10.5 0.3 3.2 3 0 0 3 3 3 0 Bacteriophage holin family, superfamily II-like Tmemb_14 PF03647.13 gi|313122605|ref|YP_004044532.1| - 1.2 10.0 6.8 1.3 9.8 0.9 2.9 2 1 0 2 2 2 0 Transmembrane proteins 14C DUF4131 PF13567.6 gi|313122605|ref|YP_004044532.1| - 1.8 8.2 10.9 0.55 9.9 2.1 2.7 1 1 2 3 3 3 0 Domain of unknown function (DUF4131) LysM PF01476.20 gi|313122607|ref|YP_004044534.1| - 1.8e-08 34.3 0.0 4.1e-08 33.1 0.0 1.7 1 1 0 1 1 1 1 LysM domain Phage_GPD PF05954.11 gi|313122608|ref|YP_004044535.1| - 1.9e-14 53.7 0.2 2.4e-14 53.3 0.2 1.2 1 0 0 1 1 1 1 Phage late control gene D protein (GPD) Phage-tail_3 PF13550.6 gi|313122608|ref|YP_004044535.1| - 0.074 12.9 0.0 0.13 12.1 0.0 1.4 1 0 0 1 1 1 0 Putative phage tail protein DUF3540 PF12059.8 gi|313122609|ref|YP_004044536.1| - 0.00025 20.9 0.3 0.12 12.1 0.5 3.0 2 1 1 3 3 3 2 Protein of unknown function (DUF3540) Phage_base_V PF04717.12 gi|313122609|ref|YP_004044536.1| - 0.00036 20.4 0.0 0.0006 19.7 0.0 1.4 1 0 0 1 1 1 1 Type VI secretion system, phage-baseplate injector G8 PF10162.9 gi|313122609|ref|YP_004044536.1| - 0.0047 17.0 0.8 0.0091 16.1 0.8 1.5 1 0 0 1 1 1 1 G8 domain DUF2345 PF10106.9 gi|313122609|ref|YP_004044536.1| - 0.01 15.7 5.3 0.015 15.1 3.1 2.2 2 1 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2345) Sarcoglycan_1 PF04790.13 gi|313122609|ref|YP_004044536.1| - 0.019 14.3 5.0 0.12 11.7 5.0 2.0 1 1 0 1 1 1 0 Sarcoglycan complex subunit protein Pilus_CpaD PF09476.10 gi|313122609|ref|YP_004044536.1| - 0.032 14.0 0.2 0.048 13.4 0.2 1.3 1 0 0 1 1 1 0 Pilus biogenesis CpaD protein (pilus_cpaD) PAAR_motif PF05488.13 gi|313122610|ref|YP_004044537.1| - 2.2e-20 72.6 7.5 2.3e-11 43.7 2.2 3.0 1 1 2 3 3 3 3 PAAR motif DUF4150 PF13665.6 gi|313122610|ref|YP_004044537.1| - 0.00051 20.2 0.0 0.11 12.6 0.0 2.5 1 1 2 3 3 3 2 Domain of unknown function (DUF4150) GPW_gp25 PF04965.14 gi|313122611|ref|YP_004044538.1| - 2.7e-25 87.9 0.1 3.2e-25 87.7 0.1 1.1 1 0 0 1 1 1 1 Gene 25-like lysozyme DUF2634 PF10934.8 gi|313122611|ref|YP_004044538.1| - 2.8e-05 24.2 0.0 3.7e-05 23.8 0.0 1.1 1 0 0 1 1 1 1 Protein of unknown function (DUF2634) Baseplate_J PF04865.14 gi|313122612|ref|YP_004044539.1| - 1.3e-17 63.8 0.4 5.8e-14 51.9 0.2 2.3 2 0 0 2 2 2 2 Baseplate J-like protein Baseplate_J PF04865.14 gi|313122613|ref|YP_004044540.1| - 3e-16 59.4 6.5 2.6e-14 53.0 2.0 2.5 3 0 0 3 3 3 2 Baseplate J-like protein Tail_P2_I PF09684.10 gi|313122614|ref|YP_004044541.1| - 2.7e-06 27.3 0.0 6.9e-06 26.0 0.0 1.6 1 0 0 1 1 1 1 Phage tail protein (Tail_P2_I) Tachylectin PF14517.6 gi|313122614|ref|YP_004044541.1| - 0.03 13.9 0.0 0.25 10.8 0.0 2.2 2 0 0 2 2 2 0 Tachylectin PQQ_3 PF13570.6 gi|313122614|ref|YP_004044541.1| - 0.031 14.8 10.7 5.4 7.6 1.3 5.3 4 1 1 5 5 5 0 PQQ-like domain DUF4157 PF13699.6 gi|313122615|ref|YP_004044542.1| - 5.4e-31 106.7 3.2 8.8e-31 106.0 1.9 2.1 2 0 0 2 2 2 1 Domain of unknown function (DUF4157) Peptidase_M91 PF14891.6 gi|313122615|ref|YP_004044542.1| - 0.025 14.9 0.5 0.025 14.9 0.5 1.8 2 0 0 2 2 2 0 Effector protein Fmp27_WPPW PF10359.9 gi|313122615|ref|YP_004044542.1| - 0.078 11.8 2.7 0.14 11.0 2.7 1.3 1 0 0 1 1 1 0 RNA pol II promoter Fmp27 protein domain AATF-Che1 PF13339.6 gi|313122615|ref|YP_004044542.1| - 0.57 10.9 6.6 0.11 13.2 2.5 1.9 2 0 0 2 2 2 0 Apoptosis antagonizing transcription factor Fib_alpha PF08702.10 gi|313122615|ref|YP_004044542.1| - 0.91 9.7 5.6 0.76 10.0 2.6 2.2 1 1 1 2 2 2 0 Fibrinogen alpha/beta chain family DUF4407 PF14362.6 gi|313122615|ref|YP_004044542.1| - 1 8.7 5.4 1.9 7.7 5.4 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4407) Atg14 PF10186.9 gi|313122615|ref|YP_004044542.1| - 2.7 7.0 6.8 4.9 6.1 6.8 1.4 1 0 0 1 1 1 0 Vacuolar sorting 38 and autophagy-related subunit 14 UPF0242 PF06785.11 gi|313122615|ref|YP_004044542.1| - 7.5 6.6 13.5 7.4 6.6 8.8 2.2 1 1 1 2 2 2 0 Uncharacterised protein family (UPF0242) N-terminus DUF4157 PF13699.6 gi|313122617|ref|YP_004044544.1| - 3.8e-18 65.5 1.4 9e-18 64.3 1.4 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF4157) EXOSC1 PF10447.9 gi|313122617|ref|YP_004044544.1| - 0.0076 16.8 2.7 0.16 12.6 0.4 2.5 1 1 1 2 2 2 1 Exosome component EXOSC1/CSL4 HlyD_2 PF12700.7 gi|313122617|ref|YP_004044544.1| - 0.024 13.4 0.1 0.035 12.8 0.1 1.2 1 0 0 1 1 1 0 HlyD family secretion protein Peptidase_M91 PF14891.6 gi|313122617|ref|YP_004044544.1| - 0.03 14.6 5.0 0.031 14.6 0.3 2.5 2 1 0 2 2 2 0 Effector protein RD3 PF14473.6 gi|313122617|ref|YP_004044544.1| - 0.031 14.1 0.2 0.031 14.1 0.2 1.9 2 0 0 2 2 2 0 RD3 protein SprT-like PF10263.9 gi|313122617|ref|YP_004044544.1| - 0.049 13.5 0.3 8 6.4 0.0 2.3 2 0 0 2 2 2 0 SprT-like family MtrG PF04210.13 gi|313122617|ref|YP_004044544.1| - 0.16 11.9 0.5 12 5.9 0.1 3.2 3 0 0 3 3 3 0 Tetrahydromethanopterin S-methyltransferase, subunit G DUF3847 PF12958.7 gi|313122617|ref|YP_004044544.1| - 6.7 6.9 7.4 19 5.5 1.0 3.4 3 1 0 3 3 3 0 Protein of unknown function (DUF3847) Mst1_SARAH PF11629.8 gi|313122617|ref|YP_004044544.1| - 8.9 6.5 9.1 1.1 9.4 1.7 2.6 2 0 0 2 2 2 0 C terminal SARAH domain of Mst1 RLAN PF14401.6 gi|313122619|ref|YP_004044546.1| - 0.11 12.1 0.1 0.19 11.4 0.1 1.5 1 1 0 1 1 1 0 RimK-like ATPgrasp N-terminal domain DUF4157 PF13699.6 gi|313122621|ref|YP_004044548.1| - 2e-06 27.9 0.7 2.8e-06 27.4 0.7 1.2 1 0 0 1 1 1 1 Domain of unknown function (DUF4157) Peptidase_M91 PF14891.6 gi|313122621|ref|YP_004044548.1| - 0.1 12.9 0.4 0.11 12.8 0.4 1.1 1 0 0 1 1 1 0 Effector protein ArsA_ATPase PF02374.15 gi|313122622|ref|YP_004044549.1| - 3.8e-72 243.0 0.0 4.3e-72 242.9 0.0 1.0 1 0 0 1 1 1 1 Anion-transporting ATPase ParA PF10609.9 gi|313122622|ref|YP_004044549.1| - 6.4e-07 29.1 0.3 0.002 17.6 0.1 2.1 2 0 0 2 2 2 2 NUBPL iron-transfer P-loop NTPase CbiA PF01656.23 gi|313122622|ref|YP_004044549.1| - 1e-06 28.8 0.0 2.8e-06 27.4 0.0 1.8 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.6 gi|313122622|ref|YP_004044549.1| - 1.3e-05 25.1 0.0 3.7e-05 23.7 0.0 1.8 1 1 0 1 1 1 1 AAA domain CBP_BcsQ PF06564.12 gi|313122622|ref|YP_004044549.1| - 0.0055 16.2 0.0 0.0087 15.6 0.0 1.3 1 0 0 1 1 1 1 Cellulose biosynthesis protein BcsQ PhoH PF02562.16 gi|313122622|ref|YP_004044549.1| - 0.025 14.0 0.0 0.041 13.3 0.0 1.3 1 0 0 1 1 1 0 PhoH-like protein IMPa_N_2 PF18650.1 gi|313122622|ref|YP_004044549.1| - 0.045 13.0 0.0 0.069 12.4 0.0 1.2 1 0 0 1 1 1 0 Immunomodulating metalloprotease N-terminal domain Zeta_toxin PF06414.12 gi|313122622|ref|YP_004044549.1| - 0.096 12.0 0.1 0.23 10.7 0.1 1.7 1 1 0 1 1 1 0 Zeta toxin Fer4_NifH PF00142.18 gi|313122622|ref|YP_004044549.1| - 0.18 11.2 0.0 0.26 10.7 0.0 1.3 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AAA_25 PF13481.6 gi|313122622|ref|YP_004044549.1| - 0.33 10.5 6.6 1.9 8.0 3.9 2.9 1 1 1 2 2 2 0 AAA domain CAMP_factor PF07373.11 gi|313122624|ref|YP_004044551.1| - 0.043 13.4 0.9 34 3.9 0.0 3.1 2 1 1 3 3 3 0 CAMP factor (Cfa) NPV_P10 PF05531.12 gi|313122624|ref|YP_004044551.1| - 0.34 11.4 3.6 27 5.3 3.6 3.2 1 1 0 1 1 1 0 Nucleopolyhedrovirus P10 protein Spc7 PF08317.11 gi|313122624|ref|YP_004044551.1| - 2 7.3 5.5 3.4 6.5 5.5 1.3 1 0 0 1 1 1 0 Spc7 kinetochore protein FliJ PF02050.16 gi|313122624|ref|YP_004044551.1| - 2.1 8.6 11.6 0.2 11.9 4.2 2.7 3 1 1 4 4 4 0 Flagellar FliJ protein Phage_sheath_1 PF04984.14 gi|313122625|ref|YP_004044552.1| - 9.8e-28 97.1 0.0 1.4e-27 96.6 0.0 1.3 1 0 0 1 1 1 1 Phage tail sheath protein subtilisin-like domain Phage_sheath_1C PF17482.2 gi|313122625|ref|YP_004044552.1| - 1.1e-19 70.3 0.0 2.6e-19 69.1 0.0 1.6 1 0 0 1 1 1 1 Phage tail sheath C-terminal domain Phage_sheath_1N PF17481.2 gi|313122625|ref|YP_004044552.1| - 0.002 18.6 1.4 0.013 16.0 0.1 2.6 2 1 1 3 3 3 1 Phage tail sheath protein beta-sandwich domain Phage_T4_gp19 PF06841.12 gi|313122626|ref|YP_004044553.1| - 9e-21 74.1 0.0 1e-20 74.0 0.0 1.0 1 0 0 1 1 1 1 T4-like virus tail tube protein gp19 HAGH_C PF16123.5 gi|313122626|ref|YP_004044553.1| - 0.012 16.1 0.1 0.021 15.3 0.1 1.4 1 0 0 1 1 1 0 Hydroxyacylglutathione hydrolase C-terminus Phage_T4_gp19 PF06841.12 gi|313122630|ref|YP_004044557.1| - 4.7e-35 120.4 0.1 5.3e-35 120.2 0.1 1.0 1 0 0 1 1 1 1 T4-like virus tail tube protein gp19 DUF4255 PF14065.6 gi|313122631|ref|YP_004044558.1| - 1.5e-31 109.4 0.0 1.7e-31 109.3 0.0 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF4255) AAA PF00004.29 gi|313122632|ref|YP_004044559.1| - 5.5e-30 104.5 0.0 2e-28 99.4 0.0 2.4 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) Zot PF05707.12 gi|313122632|ref|YP_004044559.1| - 3.8e-05 23.4 0.7 0.00088 19.0 0.7 2.3 1 1 0 1 1 1 1 Zonular occludens toxin (Zot) AAA_33 PF13671.6 gi|313122632|ref|YP_004044559.1| - 0.00044 20.4 0.0 0.07 13.3 0.0 2.9 2 0 0 2 2 2 1 AAA domain AAA_2 PF07724.14 gi|313122632|ref|YP_004044559.1| - 0.0029 17.7 0.1 0.0057 16.8 0.1 1.5 1 0 0 1 1 1 1 AAA domain (Cdc48 subfamily) TIP49 PF06068.13 gi|313122632|ref|YP_004044559.1| - 0.0035 16.6 0.0 0.0082 15.4 0.0 1.6 2 0 0 2 2 2 1 TIP49 P-loop domain AAA_18 PF13238.6 gi|313122632|ref|YP_004044559.1| - 0.0075 16.8 0.0 0.049 14.2 0.0 2.4 2 0 0 2 2 2 1 AAA domain AAA_22 PF13401.6 gi|313122632|ref|YP_004044559.1| - 0.0075 16.5 1.8 0.46 10.7 0.1 3.5 2 1 1 3 3 3 1 AAA domain RNA_helicase PF00910.22 gi|313122632|ref|YP_004044559.1| - 0.021 15.2 0.0 0.15 12.4 0.0 2.4 3 0 0 3 3 3 0 RNA helicase AAA_14 PF13173.6 gi|313122632|ref|YP_004044559.1| - 0.025 14.6 0.0 0.053 13.6 0.0 1.5 1 0 0 1 1 1 0 AAA domain Cytidylate_kin2 PF13189.6 gi|313122632|ref|YP_004044559.1| - 0.048 13.8 0.1 0.13 12.4 0.1 1.7 1 0 0 1 1 1 0 Cytidylate kinase-like family RuvB_N PF05496.12 gi|313122632|ref|YP_004044559.1| - 0.06 13.1 0.0 0.13 12.0 0.0 1.5 1 0 0 1 1 1 0 Holliday junction DNA helicase RuvB P-loop domain AAA_3 PF07726.11 gi|313122632|ref|YP_004044559.1| - 0.082 12.8 0.0 0.18 11.7 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) DUF4157 PF13699.6 gi|313122633|ref|YP_004044560.1| - 3.2e-31 107.4 1.2 9.3e-31 105.9 1.2 1.9 1 0 0 1 1 1 1 Domain of unknown function (DUF4157) Peptidase_M91 PF14891.6 gi|313122633|ref|YP_004044560.1| - 0.024 14.9 0.8 0.053 13.8 0.2 1.8 1 1 0 1 1 1 0 Effector protein PKHD_C PF18331.1 gi|313122633|ref|YP_004044560.1| - 4.3 7.5 5.8 4.8 7.3 0.1 3.4 3 1 1 4 4 4 0 PKHD-type hydroxylase C-terminal domain Plug PF07715.15 gi|313122634|ref|YP_004044561.1| - 0.027 15.0 0.0 0.04 14.5 0.0 1.2 1 0 0 1 1 1 0 TonB-dependent Receptor Plug Domain Fmp27_WPPW PF10359.9 gi|313122635|ref|YP_004044562.1| - 0.0012 17.8 0.5 0.0013 17.7 0.5 1.2 1 0 0 1 1 1 1 RNA pol II promoter Fmp27 protein domain LMP PF04778.12 gi|313122635|ref|YP_004044562.1| - 0.0037 17.2 4.0 0.006 16.5 4.0 1.3 1 0 0 1 1 1 1 LMP repeated region DUF812 PF05667.11 gi|313122635|ref|YP_004044562.1| - 0.0069 15.3 4.0 0.0092 14.9 4.0 1.2 1 0 0 1 1 1 1 Protein of unknown function (DUF812) ASD2 PF08687.11 gi|313122635|ref|YP_004044562.1| - 0.0077 15.8 4.4 0.013 15.1 4.4 1.3 1 0 0 1 1 1 1 Apx/Shroom domain ASD2 Bacillus_HBL PF05791.11 gi|313122635|ref|YP_004044562.1| - 0.009 15.9 5.6 0.016 15.1 5.6 1.3 1 0 0 1 1 1 1 Bacillus haemolytic enterotoxin (HBL) DUF2884 PF11101.8 gi|313122635|ref|YP_004044562.1| - 0.012 15.1 6.7 0.02 14.4 5.5 2.0 1 1 1 2 2 2 0 Protein of unknown function (DUF2884) HemX PF04375.14 gi|313122635|ref|YP_004044562.1| - 0.014 14.8 7.1 0.022 14.1 7.1 1.3 1 0 0 1 1 1 0 HemX, putative uroporphyrinogen-III C-methyltransferase Golgin_A5 PF09787.9 gi|313122635|ref|YP_004044562.1| - 0.017 14.6 6.1 0.029 13.8 6.1 1.3 1 0 0 1 1 1 0 Golgin subfamily A member 5 DUF1664 PF07889.12 gi|313122635|ref|YP_004044562.1| - 0.027 14.5 2.3 0.062 13.3 2.3 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1664) Stathmin PF00836.19 gi|313122635|ref|YP_004044562.1| - 0.043 13.8 9.6 0.084 12.8 9.6 1.4 1 0 0 1 1 1 0 Stathmin family DUF4559 PF15112.6 gi|313122635|ref|YP_004044562.1| - 0.045 13.4 2.2 0.058 13.1 2.2 1.1 1 0 0 1 1 1 0 Domain of unknown function (DUF4559) Cluap1 PF10234.9 gi|313122635|ref|YP_004044562.1| - 0.062 12.7 4.0 0.089 12.2 4.0 1.2 1 0 0 1 1 1 0 Clusterin-associated protein-1 Vac_Fusion PF02346.16 gi|313122635|ref|YP_004044562.1| - 0.065 12.9 2.3 2.9 7.6 2.3 2.5 1 1 0 1 1 1 0 Chordopoxvirus multifunctional envelope protein A27 TMPIT PF07851.13 gi|313122635|ref|YP_004044562.1| - 0.088 12.0 1.9 0.12 11.6 1.9 1.1 1 0 0 1 1 1 0 TMPIT-like protein Cauli_AT PF03233.13 gi|313122635|ref|YP_004044562.1| - 0.11 12.4 2.5 0.19 11.6 2.5 1.4 1 0 0 1 1 1 0 Aphid transmission protein Fib_alpha PF08702.10 gi|313122635|ref|YP_004044562.1| - 0.13 12.5 4.1 0.21 11.7 4.1 1.3 1 0 0 1 1 1 0 Fibrinogen alpha/beta chain family Sec34 PF04136.15 gi|313122635|ref|YP_004044562.1| - 0.13 12.1 3.6 0.22 11.4 3.6 1.4 1 0 0 1 1 1 0 Sec34-like family Fzo_mitofusin PF04799.13 gi|313122635|ref|YP_004044562.1| - 0.25 10.9 4.2 0.45 10.0 4.2 1.4 1 0 0 1 1 1 0 fzo-like conserved region DUF726 PF05277.12 gi|313122635|ref|YP_004044562.1| - 0.34 9.8 1.5 0.5 9.2 1.5 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF726) CHDCT2 PF08074.11 gi|313122635|ref|YP_004044562.1| - 0.39 10.9 2.1 0.92 9.7 1.9 1.7 2 0 0 2 2 1 0 CHDCT2 (NUC038) domain KxDL PF10241.9 gi|313122635|ref|YP_004044562.1| - 0.41 11.0 5.1 1.4 9.3 5.1 1.9 1 1 0 1 1 1 0 Uncharacterized conserved protein COG5 PF10392.9 gi|313122635|ref|YP_004044562.1| - 0.41 10.8 4.2 0.83 9.8 4.2 1.5 1 0 0 1 1 1 0 Golgi transport complex subunit 5 Prominin PF05478.11 gi|313122635|ref|YP_004044562.1| - 0.51 8.2 2.3 0.68 7.8 2.3 1.1 1 0 0 1 1 1 0 Prominin V_ATPase_I PF01496.19 gi|313122635|ref|YP_004044562.1| - 0.56 8.1 5.1 0.83 7.5 5.1 1.1 1 0 0 1 1 1 0 V-type ATPase 116kDa subunit family Phage_GPO PF05929.11 gi|313122635|ref|YP_004044562.1| - 0.72 9.4 9.6 5.7 6.5 0.2 2.2 2 0 0 2 2 2 0 Phage capsid scaffolding protein (GPO) serine peptidase DUF4407 PF14362.6 gi|313122635|ref|YP_004044562.1| - 0.72 9.2 8.1 1.6 8.0 8.1 1.8 1 1 0 1 1 1 0 Domain of unknown function (DUF4407) SlyX PF04102.12 gi|313122635|ref|YP_004044562.1| - 0.81 10.4 6.6 5.4 7.7 0.4 2.7 1 1 1 2 2 2 0 SlyX XhlA PF10779.9 gi|313122635|ref|YP_004044562.1| - 1 9.6 11.7 0.45 10.8 1.9 3.0 2 1 1 3 3 2 0 Haemolysin XhlA NPV_P10 PF05531.12 gi|313122635|ref|YP_004044562.1| - 1.4 9.5 5.5 2 8.9 3.9 2.1 2 1 0 2 2 1 0 Nucleopolyhedrovirus P10 protein Occludin_ELL PF07303.13 gi|313122635|ref|YP_004044562.1| - 2.1 9.1 6.8 0.48 11.2 3.4 1.7 2 0 0 2 2 1 0 Occludin homology domain FlaC_arch PF05377.11 gi|313122635|ref|YP_004044562.1| - 5 7.6 7.3 34 4.9 1.1 2.8 1 1 1 2 2 2 0 Flagella accessory protein C (FlaC) DUF948 PF06103.11 gi|313122635|ref|YP_004044562.1| - 5.1 7.4 6.9 16 5.8 5.6 2.5 2 1 0 2 2 2 0 Bacterial protein of unknown function (DUF948) TMF_DNA_bd PF12329.8 gi|313122635|ref|YP_004044562.1| - 5.2 7.1 15.9 25 4.9 9.8 2.5 1 1 1 2 2 2 0 TATA element modulatory factor 1 DNA binding T7SS_ESX_EspC PF10824.8 gi|313122635|ref|YP_004044562.1| - 7.2 7.2 11.5 3 8.4 1.5 3.3 2 1 3 5 5 4 0 Excreted virulence factor EspC, type VII ESX diderm ABC_tran PF00005.27 gi|313122639|ref|YP_004044566.1| - 3.1e-23 82.8 0.0 4.9e-23 82.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|313122639|ref|YP_004044566.1| - 7.9e-10 39.0 0.2 2.5e-06 27.5 0.0 2.1 1 1 0 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|313122639|ref|YP_004044566.1| - 0.0003 21.5 0.1 0.00067 20.3 0.1 1.7 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_30 PF13604.6 gi|313122639|ref|YP_004044566.1| - 0.0082 15.9 0.1 0.06 13.1 0.0 2.3 1 1 1 2 2 2 1 AAA domain SRP54 PF00448.22 gi|313122639|ref|YP_004044566.1| - 0.013 15.2 0.0 0.021 14.5 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain MeaB PF03308.16 gi|313122639|ref|YP_004044566.1| - 0.024 13.6 0.1 0.037 13.0 0.1 1.2 1 0 0 1 1 1 0 Methylmalonyl Co-A mutase-associated GTPase MeaB AAA_23 PF13476.6 gi|313122639|ref|YP_004044566.1| - 0.075 13.5 0.0 0.12 12.9 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_29 PF13555.6 gi|313122639|ref|YP_004044566.1| - 0.079 12.7 0.0 0.15 11.9 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain SMC_N PF02463.19 gi|313122639|ref|YP_004044566.1| - 0.21 11.0 0.0 10 5.5 0.0 2.2 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain ABC2_membrane_2 PF12679.7 gi|313122640|ref|YP_004044567.1| - 3.5e-16 59.3 17.3 7.9e-16 58.2 17.3 1.6 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|313122640|ref|YP_004044567.1| - 0.0041 16.3 22.2 0.0058 15.8 22.2 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein DUF3767 PF12597.8 gi|313122640|ref|YP_004044567.1| - 0.08 12.8 0.3 0.16 11.8 0.3 1.4 1 0 0 1 1 1 0 Protein of unknown function (DUF3767) ABC2_membrane_2 PF12679.7 gi|313122641|ref|YP_004044568.1| - 1.4e-16 60.7 14.5 2e-16 60.2 14.5 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.7 gi|313122641|ref|YP_004044568.1| - 6.2e-07 29.6 1.2 6.2e-07 29.6 1.2 1.8 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.6 gi|313122641|ref|YP_004044568.1| - 6.6e-06 25.8 4.3 1.1e-05 25.2 4.3 1.3 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|313122641|ref|YP_004044568.1| - 0.025 13.7 15.4 0.033 13.3 15.4 1.1 1 0 0 1 1 1 0 ABC-2 family transporter protein YobH PF13996.6 gi|313122641|ref|YP_004044568.1| - 0.71 10.0 6.0 3.1 7.9 0.0 3.1 2 1 0 2 2 2 0 YobH-like protein Exonuc_VIII PF06630.11 gi|313122642|ref|YP_004044569.1| - 0.094 12.6 0.9 0.37 10.6 0.1 2.1 2 0 0 2 2 2 0 Enterobacterial exodeoxyribonuclease VIII Peptidase_S8 PF00082.22 gi|313122643|ref|YP_004044570.1| - 5.3e-25 88.3 0.0 6.5e-25 88.0 0.0 1.1 1 0 0 1 1 1 1 Subtilase family Amidohydro_1 PF01979.20 gi|313122643|ref|YP_004044570.1| - 0.1 11.9 0.0 0.14 11.5 0.0 1.2 1 0 0 1 1 1 0 Amidohydrolase family RVP_2 PF08284.11 gi|313122644|ref|YP_004044571.1| - 0.089 12.6 0.0 0.13 12.0 0.0 1.3 1 0 0 1 1 1 0 Retroviral aspartyl protease DDE_Tnp_1 PF01609.21 gi|313122645|ref|YP_004044572.1| - 1.5e-07 31.3 3.0 7.3e-07 29.0 3.0 1.8 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_2 PF13586.6 gi|313122645|ref|YP_004044572.1| - 0.00077 19.8 0.9 0.0015 18.8 0.8 1.5 1 1 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_3 PF13612.6 gi|313122645|ref|YP_004044572.1| - 0.0037 17.3 0.0 0.0045 17.0 0.0 1.1 1 0 0 1 1 1 1 Transposase DDE domain DDE_Tnp_1_6 PF13751.6 gi|313122645|ref|YP_004044572.1| - 0.059 13.6 0.1 0.069 13.4 0.1 1.2 1 0 0 1 1 1 0 Transposase DDE domain Orai-1 PF07856.12 gi|313122646|ref|YP_004044573.1| - 0.015 15.0 3.0 0.019 14.7 3.0 1.3 1 1 0 1 1 1 0 Mediator of CRAC channel activity Prominin PF05478.11 gi|313122646|ref|YP_004044573.1| - 0.026 12.5 2.9 0.026 12.5 2.9 1.0 1 0 0 1 1 1 0 Prominin MFS_1 PF07690.16 gi|313122646|ref|YP_004044573.1| - 0.13 11.1 6.9 0.16 10.9 6.9 1.1 1 0 0 1 1 1 0 Major Facilitator Superfamily Promethin PF16015.5 gi|313122646|ref|YP_004044573.1| - 0.15 12.0 7.5 0.18 11.7 7.5 1.2 1 0 0 1 1 1 0 Promethin YtpI PF14007.6 gi|313122646|ref|YP_004044573.1| - 0.2 11.8 5.9 0.077 13.1 3.0 1.7 1 1 0 1 1 1 0 YtpI-like protein Tom6 PF17112.5 gi|313122646|ref|YP_004044573.1| - 0.73 9.4 4.5 0.78 9.3 2.4 2.0 2 0 0 2 2 2 0 Mitochondrial import receptor subunit Tom6, fungal ABC2_membrane_2 PF12679.7 gi|313122647|ref|YP_004044574.1| - 1.1e-30 106.9 38.7 4.6e-18 65.5 13.6 3.6 2 2 0 2 2 2 2 ABC-2 family transporter protein ABC2_membrane_3 PF12698.7 gi|313122647|ref|YP_004044574.1| - 9.2e-10 38.1 40.1 6.8e-06 25.4 12.3 2.4 2 0 0 2 2 2 2 ABC-2 family transporter protein ABC_tran PF00005.27 gi|313122648|ref|YP_004044575.1| - 2.1e-25 89.8 0.0 3.3e-25 89.2 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.6 gi|313122648|ref|YP_004044575.1| - 6.2e-12 45.9 0.0 1.4e-07 31.6 0.0 2.1 1 1 1 2 2 2 2 AAA domain, putative AbiEii toxin, Type IV TA system DUF4162 PF13732.6 gi|313122648|ref|YP_004044575.1| - 3.2e-05 24.6 0.0 7.5e-05 23.4 0.0 1.7 2 0 0 2 2 2 1 Domain of unknown function (DUF4162) AAA_29 PF13555.6 gi|313122648|ref|YP_004044575.1| - 0.0038 16.9 0.0 0.0079 15.9 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.6 gi|313122648|ref|YP_004044575.1| - 0.027 15.0 0.0 0.043 14.3 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.6 gi|313122648|ref|YP_004044575.1| - 0.13 12.0 0.0 0.28 10.9 0.0 1.6 1 1 0 1 1 1 0 AAA domain BCA_ABC_TP_C PF12399.8 gi|313122648|ref|YP_004044575.1| - 0.13 12.2 0.2 0.77 9.8 0.0 2.1 2 0 0 2 2 2 0 Branched-chain amino acid ATP-binding cassette transporter SRP54 PF00448.22 gi|313122648|ref|YP_004044575.1| - 0.13 11.9 0.0 0.22 11.1 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain SMC_N PF02463.19 gi|313122648|ref|YP_004044575.1| - 0.13 11.6 0.0 3.9 6.8 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_7 PF12775.7 gi|313122648|ref|YP_004044575.1| - 0.21 11.1 0.0 0.31 10.5 0.0 1.3 1 0 0 1 1 1 0 P-loop containing dynein motor region CLP1_P PF16575.5 gi|313122648|ref|YP_004044575.1| - 0.21 11.4 0.1 0.43 10.4 0.0 1.5 2 0 0 2 2 2 0 mRNA cleavage and polyadenylation factor CLP1 P-loop DDE_Tnp_1 PF01609.21 gi|313122651|ref|YP_004044578.1| - 3.5e-05 23.5 0.0 4.1e-05 23.3 0.0 1.0 1 0 0 1 1 1 1 Transposase DDE domain AAA_31 PF13614.6 gi|313122652|ref|YP_004044579.1| - 1.9e-19 70.2 0.0 3.3e-19 69.5 0.0 1.3 1 0 0 1 1 1 1 AAA domain CbiA PF01656.23 gi|313122652|ref|YP_004044579.1| - 2.4e-11 43.8 0.0 4e-11 43.1 0.0 1.3 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain MipZ PF09140.11 gi|313122652|ref|YP_004044579.1| - 8.3e-05 22.0 0.0 0.0011 18.3 0.0 2.1 2 0 0 2 2 2 1 ATPase MipZ ParA PF10609.9 gi|313122652|ref|YP_004044579.1| - 8.9e-05 22.1 0.0 0.00015 21.3 0.0 1.3 1 0 0 1 1 1 1 NUBPL iron-transfer P-loop NTPase ArsA_ATPase PF02374.15 gi|313122652|ref|YP_004044579.1| - 0.00024 20.4 0.0 0.00039 19.7 0.0 1.5 1 0 0 1 1 1 1 Anion-transporting ATPase CBP_BcsQ PF06564.12 gi|313122652|ref|YP_004044579.1| - 0.00047 19.7 0.1 0.0043 16.6 0.1 2.2 1 1 0 1 1 1 1 Cellulose biosynthesis protein BcsQ Fer4_NifH PF00142.18 gi|313122652|ref|YP_004044579.1| - 0.045 13.2 0.0 0.082 12.3 0.0 1.3 1 0 0 1 1 1 0 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Pex14_N PF04695.13 gi|313122653|ref|YP_004044580.1| - 0.0066 17.1 2.0 0.0077 16.9 2.0 1.2 1 0 0 1 1 1 1 Peroxisomal membrane anchor protein (Pex14p) conserved region DUF3801 PF12687.7 gi|313122653|ref|YP_004044580.1| - 0.086 12.9 5.3 0.1 12.6 5.3 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3801) XAP5 PF04921.14 gi|313122653|ref|YP_004044580.1| - 0.12 12.2 5.8 0.15 11.9 5.8 1.2 1 0 0 1 1 1 0 XAP5, circadian clock regulator DUF515 PF04415.12 gi|313122653|ref|YP_004044580.1| - 0.55 8.6 2.4 0.57 8.5 2.4 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF515) Presenilin PF01080.17 gi|313122653|ref|YP_004044580.1| - 8.3 5.1 5.2 8.9 5.0 5.2 1.1 1 0 0 1 1 1 0 Presenilin NrsF PF06532.11 gi|313122654|ref|YP_004044581.1| - 0.033 13.9 0.6 0.033 13.9 0.6 2.3 1 1 1 2 2 2 0 Negative regulator of sigma F PRA1 PF03208.19 gi|313122654|ref|YP_004044581.1| - 0.15 11.7 2.1 0.21 11.2 2.1 1.3 1 0 0 1 1 1 0 PRA1 family protein DUF4199 PF13858.6 gi|313122654|ref|YP_004044581.1| - 0.27 11.6 6.7 0.098 13.1 2.6 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF4199) TraL PF07178.11 gi|313122654|ref|YP_004044581.1| - 4.9 7.7 5.8 1.6 9.2 0.1 2.2 1 1 1 2 2 2 0 TraL protein DUF202 PF02656.15 gi|313122654|ref|YP_004044581.1| - 9.5 6.7 14.4 1.2e+02 3.2 14.4 2.4 1 1 0 1 1 1 0 Domain of unknown function (DUF202) Rick_17kDa_Anti PF05433.15 gi|313122655|ref|YP_004044582.1| - 0.051 13.4 11.8 0.14 12.1 11.8 1.7 1 0 0 1 1 1 0 Glycine zipper 2TM domain Gly-zipper_YMGG PF13441.6 gi|313122655|ref|YP_004044582.1| - 0.78 9.5 12.4 2.5 7.9 12.4 1.8 1 0 0 1 1 1 0 YMGG-like Gly-zipper Gly-zipper_Omp PF13488.6 gi|313122655|ref|YP_004044582.1| - 0.8 9.8 14.0 2.3 8.3 14.0 1.8 1 0 0 1 1 1 0 Glycine zipper Gpi16 PF04113.14 gi|313122658|ref|YP_004044585.1| - 0.14 10.6 0.7 0.13 10.7 0.7 1.0 1 0 0 1 1 1 0 Gpi16 subunit, GPI transamidase component DoxX PF07681.12 gi|313122659|ref|YP_004044586.1| - 3.5e-11 43.5 10.7 3.5e-11 43.5 10.7 1.7 2 0 0 2 2 2 1 DoxX HR_lesion PF05514.11 gi|313122659|ref|YP_004044586.1| - 0.0033 17.6 1.4 0.0085 16.3 0.3 1.8 1 1 1 2 2 2 1 HR-like lesion-inducing Fe-ADH PF00465.19 gi|313122660|ref|YP_004044587.1| - 1.6e-62 211.4 0.5 1.9e-62 211.2 0.5 1.0 1 0 0 1 1 1 1 Iron-containing alcohol dehydrogenase Fe-ADH_2 PF13685.6 gi|313122660|ref|YP_004044587.1| - 6.9e-15 55.4 0.3 1.4e-08 34.7 0.1 2.1 2 0 0 2 2 2 2 Iron-containing alcohol dehydrogenase dbPDZ_assoc PF16610.5 gi|313122660|ref|YP_004044587.1| - 0.11 12.7 0.0 36 4.7 0.0 3.1 2 1 1 3 3 3 0 Unstructured region between two PDZ domains on Dlg5 MAAL_C PF07476.11 gi|313122661|ref|YP_004044588.1| - 0.13 11.4 0.0 0.22 10.7 0.0 1.2 1 0 0 1 1 1 0 Methylaspartate ammonia-lyase C-terminus Isochorismatase PF00857.20 gi|313122662|ref|YP_004044589.1| - 3.4e-29 102.2 0.2 9e-29 100.9 0.2 1.7 1 1 0 1 1 1 1 Isochorismatase family TK PF00265.18 gi|313122662|ref|YP_004044589.1| - 0.078 12.8 0.0 0.14 12.0 0.0 1.4 1 0 0 1 1 1 0 Thymidine kinase zf-CDGSH PF09360.10 gi|313122663|ref|YP_004044590.1| - 3.1e-29 100.9 6.7 4.6e-15 55.6 0.1 2.5 2 0 0 2 2 2 2 Iron-binding zinc finger CDGSH type Fer4_19 PF06902.11 gi|313122663|ref|YP_004044590.1| - 2.5e-24 85.1 0.0 5.1e-24 84.1 0.0 1.6 1 0 0 1 1 1 1 Divergent 4Fe-4S mono-cluster Fer4_13 PF13370.6 gi|313122663|ref|YP_004044590.1| - 0.045 14.3 0.5 0.17 12.4 0.2 2.2 1 1 1 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I Fer4_6 PF12837.7 gi|313122663|ref|YP_004044590.1| - 1.2 9.4 6.1 0.45 10.7 0.3 3.0 3 0 0 3 3 3 0 4Fe-4S binding domain Isochorismatase PF00857.20 gi|313122664|ref|YP_004044591.1| - 5.3e-24 85.3 0.0 9.9e-24 84.5 0.0 1.4 1 1 0 1 1 1 1 Isochorismatase family HxlR PF01638.17 gi|313122665|ref|YP_004044592.1| - 3.8e-20 71.5 0.0 4.7e-20 71.2 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix HTH_34 PF13601.6 gi|313122665|ref|YP_004044592.1| - 3.5e-05 23.9 0.0 5.1e-05 23.4 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain MarR_2 PF12802.7 gi|313122665|ref|YP_004044592.1| - 9.8e-05 22.2 0.1 0.00016 21.5 0.1 1.3 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|313122665|ref|YP_004044592.1| - 0.00017 22.0 0.1 0.00027 21.4 0.1 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_5 PF01022.20 gi|313122665|ref|YP_004044592.1| - 0.0032 17.3 0.0 0.0056 16.5 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family Connexin50 PF03509.14 gi|313122665|ref|YP_004044592.1| - 0.0077 17.0 0.0 0.02 15.7 0.0 1.7 1 0 0 1 1 1 1 Gap junction alpha-8 protein (Cx50) MarR PF01047.22 gi|313122665|ref|YP_004044592.1| - 0.012 15.5 0.1 0.022 14.7 0.1 1.5 1 1 0 1 1 1 0 MarR family TrmB PF01978.19 gi|313122665|ref|YP_004044592.1| - 0.016 15.1 0.1 0.027 14.3 0.1 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB PadR PF03551.14 gi|313122665|ref|YP_004044592.1| - 0.02 14.8 0.0 0.035 14.1 0.0 1.4 1 0 0 1 1 1 0 Transcriptional regulator PadR-like family HTH_43 PF09904.9 gi|313122665|ref|YP_004044592.1| - 0.034 14.1 0.0 0.052 13.5 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn helix Replic_Relax PF13814.6 gi|313122665|ref|YP_004044592.1| - 0.048 13.7 0.0 0.06 13.4 0.0 1.1 1 0 0 1 1 1 0 Replication-relaxation TnsD PF15978.5 gi|313122665|ref|YP_004044592.1| - 0.053 12.5 0.1 0.064 12.2 0.1 1.0 1 0 0 1 1 1 0 Tn7-like transposition protein D Trp_repressor PF01371.19 gi|313122665|ref|YP_004044592.1| - 0.13 12.4 0.0 0.18 12.0 0.0 1.2 1 0 0 1 1 1 0 Trp repressor protein DUF4364 PF14277.6 gi|313122665|ref|YP_004044592.1| - 0.17 11.6 0.0 0.35 10.6 0.0 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4364) Glyoxalase PF00903.25 gi|313122666|ref|YP_004044593.1| - 1.6e-11 44.5 0.4 2.2e-11 44.1 0.4 1.2 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|313122666|ref|YP_004044593.1| - 8.3e-07 29.3 0.0 1.5e-06 28.4 0.0 1.4 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase PF00903.25 gi|313122667|ref|YP_004044594.1| - 1.6e-32 112.4 1.3 1.6e-17 63.9 0.0 2.1 2 0 0 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.6 gi|313122667|ref|YP_004044594.1| - 0.0015 18.8 0.2 1.2 9.5 0.0 3.3 1 1 1 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HicA_toxin PF07927.12 gi|313122667|ref|YP_004044594.1| - 0.019 15.0 0.0 0.049 13.7 0.0 1.7 1 0 0 1 1 1 0 HicA toxin of bacterial toxin-antitoxin, Glyoxalase_2 PF12681.7 gi|313122667|ref|YP_004044594.1| - 0.049 13.6 0.0 0.5 10.3 0.0 2.1 1 1 0 1 1 1 0 Glyoxalase-like domain Abhydrolase_2 PF02230.16 gi|313122668|ref|YP_004044595.1| - 1.7e-22 80.3 0.0 1.3e-21 77.5 0.0 1.9 1 1 0 1 1 1 1 Phospholipase/Carboxylesterase Hydrolase_4 PF12146.8 gi|313122668|ref|YP_004044595.1| - 2.6e-09 36.7 0.8 0.017 14.4 0.0 3.0 2 1 1 3 3 3 3 Serine aminopeptidase, S33 DLH PF01738.18 gi|313122668|ref|YP_004044595.1| - 9.4e-06 25.3 0.0 1.3e-05 24.8 0.0 1.3 1 1 0 1 1 1 1 Dienelactone hydrolase family Abhydrolase_1 PF00561.20 gi|313122668|ref|YP_004044595.1| - 0.0012 18.6 0.1 0.0043 16.7 0.0 1.9 1 1 1 2 2 2 1 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|313122668|ref|YP_004044595.1| - 0.0021 18.7 6.7 0.0071 17.0 6.6 1.7 1 1 0 1 1 1 1 Alpha/beta hydrolase family LIP PF03583.14 gi|313122668|ref|YP_004044595.1| - 0.039 13.3 0.0 0.057 12.7 0.0 1.2 1 0 0 1 1 1 0 Secretory lipase Palm_thioest PF02089.15 gi|313122668|ref|YP_004044595.1| - 0.041 13.7 0.0 0.047 13.5 0.0 1.1 1 0 0 1 1 1 0 Palmitoyl protein thioesterase NUDIX-like PF09296.11 gi|313122668|ref|YP_004044595.1| - 0.11 13.2 0.0 0.84 10.3 0.0 2.1 1 1 0 1 1 1 0 NADH pyrophosphatase-like rudimentary NUDIX domain FSH1 PF03959.13 gi|313122668|ref|YP_004044595.1| - 0.13 11.9 0.0 0.18 11.4 0.0 1.3 1 0 0 1 1 1 0 Serine hydrolase (FSH1) CoA_binding_2 PF13380.6 gi|313122669|ref|YP_004044596.1| - 9.2e-39 132.5 0.4 1.1e-38 132.3 0.4 1.0 1 0 0 1 1 1 1 CoA binding domain CoA_binding PF02629.19 gi|313122669|ref|YP_004044596.1| - 1.7e-05 25.4 0.0 2.6e-05 24.8 0.0 1.2 1 0 0 1 1 1 1 CoA binding domain Adhesin_P1_N PF18652.1 gi|313122669|ref|YP_004044596.1| - 0.073 13.1 0.6 0.13 12.3 0.6 1.3 1 0 0 1 1 1 0 Adhesin P1 N-terminal domain PGM_PMM_II PF02879.16 gi|313122669|ref|YP_004044596.1| - 0.11 13.2 0.0 0.21 12.2 0.0 1.5 1 0 0 1 1 1 0 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Eno-Rase_NADH_b PF12242.8 gi|313122669|ref|YP_004044596.1| - 0.13 12.1 0.0 0.27 11.0 0.0 1.5 1 0 0 1 1 1 0 NAD(P)H binding domain of trans-2-enoyl-CoA reductase Thiamine_BP PF01910.17 gi|313122670|ref|YP_004044597.1| - 4.7e-21 74.5 0.4 5.4e-21 74.3 0.4 1.0 1 0 0 1 1 1 1 Thiamine-binding protein Usp PF00582.26 gi|313122671|ref|YP_004044598.1| - 8.7e-62 207.8 2.3 4.1e-33 114.9 0.5 2.0 2 0 0 2 2 2 2 Universal stress protein family MGS PF02142.22 gi|313122671|ref|YP_004044598.1| - 0.0013 18.9 0.1 0.004 17.3 0.0 1.9 2 0 0 2 2 2 1 MGS-like domain AA_permease_2 PF13520.6 gi|313122673|ref|YP_004044600.1| - 5e-33 114.6 41.3 6.6e-33 114.2 41.3 1.1 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.21 gi|313122673|ref|YP_004044600.1| - 2.6e-21 75.8 33.4 3.7e-21 75.3 33.4 1.1 1 0 0 1 1 1 1 Amino acid permease Usp PF00582.26 gi|313122673|ref|YP_004044600.1| - 2.1e-05 25.1 1.0 0.032 14.7 0.1 2.3 2 0 0 2 2 2 2 Universal stress protein family AA_permease_C PF13906.6 gi|313122673|ref|YP_004044600.1| - 0.00014 21.8 5.4 0.00014 21.8 5.4 2.5 2 0 0 2 2 2 1 C-terminus of AA_permease ArsP_1 PF03773.13 gi|313122674|ref|YP_004044601.1| - 1e-72 244.8 12.8 1.3e-72 244.4 12.8 1.1 1 0 0 1 1 1 1 Predicted permease YHS PF04945.13 gi|313122674|ref|YP_004044601.1| - 2.1e-06 27.7 0.1 4.1e-06 26.8 0.1 1.5 1 0 0 1 1 1 1 YHS domain zf-FCS PF06467.14 gi|313122674|ref|YP_004044601.1| - 0.019 14.9 0.3 0.035 14.1 0.3 1.4 1 0 0 1 1 1 0 MYM-type Zinc finger with FCS sequence motif DUF2116 PF09889.9 gi|313122674|ref|YP_004044601.1| - 0.03 14.3 0.1 0.03 14.3 0.1 2.7 4 0 0 4 4 4 0 Uncharacterized protein containing a Zn-ribbon (DUF2116) Halogen_Hydrol PF10112.9 gi|313122674|ref|YP_004044601.1| - 8.2 6.4 7.9 8 6.4 0.0 2.7 2 0 0 2 2 2 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein NAPRTase_N PF17767.1 gi|313122675|ref|YP_004044602.1| - 2.2e-17 63.6 0.1 9.6e-17 61.5 0.0 2.0 2 0 0 2 2 2 1 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain NAPRTase PF04095.16 gi|313122675|ref|YP_004044602.1| - 1.2e-11 44.6 0.0 2.1e-11 43.9 0.0 1.3 1 0 0 1 1 1 1 Nicotinate phosphoribosyltransferase (NAPRTase) family NAPRTase_C PF17956.1 gi|313122675|ref|YP_004044602.1| - 1.9e-10 41.1 0.1 9.2e-10 38.9 0.0 1.8 1 1 1 2 2 2 1 Nicotinate phosphoribosyltransferase C-terminal domain NAPRTase_N PF17767.1 gi|313122676|ref|YP_004044603.1| - 0.016 15.6 0.0 0.026 14.9 0.0 1.4 2 0 0 2 2 2 0 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain Na_Pi_cotrans PF02690.15 gi|313122677|ref|YP_004044604.1| - 1.1e-15 58.0 15.7 1.8e-09 37.8 4.4 2.4 2 0 0 2 2 2 2 Na+/Pi-cotransporter DUF1270 PF06900.11 gi|313122677|ref|YP_004044604.1| - 0.1 13.0 0.1 0.1 13.0 0.1 2.5 2 0 0 2 2 2 0 Protein of unknown function (DUF1270) Usp PF00582.26 gi|313122678|ref|YP_004044605.1| - 3.5e-23 82.7 3.0 4e-23 82.5 3.0 1.0 1 0 0 1 1 1 1 Universal stress protein family AP_endonuc_2 PF01261.24 gi|313122678|ref|YP_004044605.1| - 0.0027 17.2 0.2 0.014 14.8 0.1 1.8 2 0 0 2 2 2 1 Xylose isomerase-like TIM barrel VWA PF00092.28 gi|313122678|ref|YP_004044605.1| - 0.012 15.8 0.0 0.018 15.3 0.0 1.2 1 0 0 1 1 1 0 von Willebrand factor type A domain YflT PF11181.8 gi|313122678|ref|YP_004044605.1| - 0.029 14.9 0.0 0.041 14.4 0.0 1.2 1 0 0 1 1 1 0 Heat induced stress protein YflT SPO22 PF08631.10 gi|313122678|ref|YP_004044605.1| - 0.036 13.6 0.1 0.045 13.2 0.1 1.1 1 0 0 1 1 1 0 Meiosis protein SPO22/ZIP4 like CTP_transf_like PF01467.26 gi|313122679|ref|YP_004044606.1| - 1.9e-06 28.1 1.2 8.9e-06 25.9 1.2 1.9 1 1 0 1 1 1 1 Cytidylyltransferase-like FAD_syn PF06574.12 gi|313122679|ref|YP_004044606.1| - 0.049 13.5 0.6 0.13 12.1 0.5 1.8 2 1 0 2 2 2 0 FAD synthetase VanZ PF04892.12 gi|313122680|ref|YP_004044607.1| - 0.00028 21.5 0.0 0.00033 21.3 0.0 1.3 1 1 0 1 1 1 1 VanZ like family DUF2279 PF10043.9 gi|313122680|ref|YP_004044607.1| - 0.03 15.1 0.0 0.046 14.5 0.0 1.2 1 0 0 1 1 1 0 Predicted periplasmic lipoprotein (DUF2279) Tmem26 PF09772.9 gi|313122680|ref|YP_004044607.1| - 0.12 11.7 0.0 0.12 11.7 0.0 1.1 1 0 0 1 1 1 0 Transmembrane protein 26 SNARE PF05739.19 gi|313122680|ref|YP_004044607.1| - 0.17 11.9 0.1 0.33 11.0 0.1 1.5 1 0 0 1 1 1 0 SNARE domain Cdc6_C PF09079.11 gi|313122681|ref|YP_004044608.1| - 1.9e-18 66.2 0.2 4.3e-18 65.1 0.2 1.7 1 0 0 1 1 1 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|313122681|ref|YP_004044608.1| - 1.8e-16 60.6 0.3 6.1e-16 58.9 0.0 1.9 2 1 0 2 2 2 1 AAA domain AAA_16 PF13191.6 gi|313122681|ref|YP_004044608.1| - 6.8e-08 33.1 0.3 6.8e-08 33.1 0.3 2.5 2 2 0 2 2 2 1 AAA ATPase domain AAA PF00004.29 gi|313122681|ref|YP_004044608.1| - 4.6e-06 27.1 0.2 1.9e-05 25.1 0.0 2.1 2 1 0 2 2 1 1 ATPase family associated with various cellular activities (AAA) TniB PF05621.11 gi|313122681|ref|YP_004044608.1| - 3.8e-05 23.2 0.0 7.9e-05 22.1 0.0 1.5 1 0 0 1 1 1 1 Bacterial TniB protein NACHT PF05729.12 gi|313122681|ref|YP_004044608.1| - 7.7e-05 22.7 0.1 0.00026 20.9 0.0 1.8 2 0 0 2 2 2 1 NACHT domain Sigma54_activat PF00158.26 gi|313122681|ref|YP_004044608.1| - 0.00017 21.3 0.1 0.00043 20.0 0.1 1.7 1 0 0 1 1 1 1 Sigma-54 interaction domain AAA_5 PF07728.14 gi|313122681|ref|YP_004044608.1| - 0.00034 20.6 1.0 0.0033 17.4 0.8 2.5 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) PhoH PF02562.16 gi|313122681|ref|YP_004044608.1| - 0.00083 18.9 0.4 0.08 12.4 0.1 2.3 2 0 0 2 2 2 1 PhoH-like protein DUF87 PF01935.17 gi|313122681|ref|YP_004044608.1| - 0.0028 17.8 1.9 0.011 15.9 0.1 2.5 2 1 1 3 3 3 1 Helicase HerA, central domain ResIII PF04851.15 gi|313122681|ref|YP_004044608.1| - 0.0029 17.7 0.0 0.0061 16.6 0.0 1.6 1 0 0 1 1 1 1 Type III restriction enzyme, res subunit Kinesin PF00225.23 gi|313122681|ref|YP_004044608.1| - 0.0032 16.4 0.0 0.0089 15.0 0.0 1.7 2 0 0 2 2 2 1 Kinesin motor domain DEAD PF00270.29 gi|313122681|ref|YP_004044608.1| - 0.0037 17.1 2.5 1.5 8.5 2.5 2.4 1 1 0 1 1 1 1 DEAD/DEAH box helicase ABC_tran PF00005.27 gi|313122681|ref|YP_004044608.1| - 0.0058 17.1 0.5 0.021 15.3 0.0 2.1 2 1 0 2 2 2 1 ABC transporter Zeta_toxin PF06414.12 gi|313122681|ref|YP_004044608.1| - 0.008 15.5 0.0 0.019 14.3 0.0 1.6 1 0 0 1 1 1 1 Zeta toxin AAA_32 PF13654.6 gi|313122681|ref|YP_004044608.1| - 0.0094 14.8 0.7 0.73 8.5 0.4 2.2 2 0 0 2 2 2 1 AAA domain CbiA PF01656.23 gi|313122681|ref|YP_004044608.1| - 0.012 15.6 0.0 0.025 14.6 0.0 1.6 1 1 0 1 1 1 0 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_2 PF07724.14 gi|313122681|ref|YP_004044608.1| - 0.013 15.6 0.1 0.04 14.0 0.0 1.9 2 0 0 2 2 1 0 AAA domain (Cdc48 subfamily) NB-ARC PF00931.22 gi|313122681|ref|YP_004044608.1| - 0.017 14.3 0.0 0.028 13.6 0.0 1.4 1 0 0 1 1 1 0 NB-ARC domain Mg_chelatase PF01078.21 gi|313122681|ref|YP_004044608.1| - 0.027 13.9 0.0 0.043 13.2 0.0 1.4 1 0 0 1 1 1 0 Magnesium chelatase, subunit ChlI SWI2_SNF2 PF18766.1 gi|313122681|ref|YP_004044608.1| - 0.039 13.6 0.4 0.082 12.6 0.0 1.7 2 0 0 2 2 2 0 SWI2/SNF2 ATPase P-II PF00543.22 gi|313122681|ref|YP_004044608.1| - 0.064 13.9 0.2 0.7 10.5 0.0 2.6 2 1 0 2 2 2 0 Nitrogen regulatory protein P-II AAA_assoc_2 PF16193.5 gi|313122681|ref|YP_004044608.1| - 0.081 13.3 0.4 0.24 11.8 0.4 1.8 1 0 0 1 1 1 0 AAA C-terminal domain Microtub_bd PF16796.5 gi|313122681|ref|YP_004044608.1| - 0.087 12.8 0.0 0.22 11.4 0.0 1.7 1 0 0 1 1 1 0 Microtubule binding ATP-synt_ab PF00006.25 gi|313122681|ref|YP_004044608.1| - 0.099 12.3 0.0 0.19 11.4 0.0 1.5 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain AAA_7 PF12775.7 gi|313122681|ref|YP_004044608.1| - 0.12 11.8 0.1 0.27 10.7 0.1 1.5 1 0 0 1 1 1 0 P-loop containing dynein motor region RNA_helicase PF00910.22 gi|313122681|ref|YP_004044608.1| - 0.13 12.6 0.1 0.46 10.9 0.1 2.0 1 1 0 1 1 1 0 RNA helicase DUF4252 PF14060.6 gi|313122681|ref|YP_004044608.1| - 0.19 11.6 0.7 4.7 7.1 0.1 2.3 1 1 1 2 2 2 0 Domain of unknown function (DUF4252) fn3 PF00041.21 gi|313122682|ref|YP_004044609.1| - 1.4e-21 76.6 28.1 1.2e-10 41.6 3.2 6.1 7 0 0 7 7 7 3 Fibronectin type III domain DUF4998 PF16389.5 gi|313122682|ref|YP_004044609.1| - 0.0056 16.3 1.0 1.9 8.0 0.0 3.0 3 0 0 3 3 3 2 Domain of unknown function CP2 PF04516.15 gi|313122682|ref|YP_004044609.1| - 0.075 12.3 0.7 3.5 6.8 0.0 3.0 3 0 0 3 3 3 0 CP2 transcription factor DUF677 PF05055.12 gi|313122685|ref|YP_004044612.1| - 0.27 10.1 0.0 0.27 10.1 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF677) MarR_2 PF12802.7 gi|313122687|ref|YP_004044614.1| - 0.00072 19.4 0.2 0.00089 19.1 0.2 1.2 1 0 0 1 1 1 1 MarR family HTH_24 PF13412.6 gi|313122687|ref|YP_004044614.1| - 0.0014 18.2 0.0 0.002 17.6 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding GntR PF00392.21 gi|313122687|ref|YP_004044614.1| - 0.0042 16.7 0.1 0.0068 16.0 0.1 1.3 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_36 PF13730.6 gi|313122687|ref|YP_004044614.1| - 0.0047 16.9 0.0 0.027 14.4 0.0 2.0 1 1 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.20 gi|313122687|ref|YP_004044614.1| - 0.013 15.4 0.0 0.018 14.9 0.0 1.2 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family DprA_WH PF17782.1 gi|313122687|ref|YP_004044614.1| - 0.032 14.3 0.1 0.06 13.5 0.1 1.5 1 0 0 1 1 1 0 DprA winged helix domain Rrf2 PF02082.20 gi|313122687|ref|YP_004044614.1| - 0.058 13.7 0.0 0.078 13.3 0.0 1.1 1 0 0 1 1 1 0 Transcriptional regulator MarR PF01047.22 gi|313122687|ref|YP_004044614.1| - 0.064 13.2 0.0 0.099 12.6 0.0 1.3 1 1 0 1 1 1 0 MarR family TFIIE_alpha PF02002.17 gi|313122687|ref|YP_004044614.1| - 0.13 12.2 0.0 0.19 11.6 0.0 1.3 1 1 0 1 1 1 0 TFIIE alpha subunit HTH_43 PF09904.9 gi|313122687|ref|YP_004044614.1| - 0.13 12.2 0.0 0.16 11.9 0.0 1.1 1 0 0 1 1 1 0 Winged helix-turn helix Spem1 PF15670.5 gi|313122688|ref|YP_004044615.1| - 0.053 13.1 0.8 0.053 13.1 0.8 1.0 1 0 0 1 1 1 0 Spermatid maturation protein 1 CENP-F_leu_zip PF10473.9 gi|313122689|ref|YP_004044616.1| - 4.4e-06 26.8 4.4 4.4e-06 26.8 4.4 2.2 1 1 1 2 2 2 1 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 XhlA PF10779.9 gi|313122689|ref|YP_004044616.1| - 9.4e-05 22.5 1.9 9.4e-05 22.5 1.9 3.0 3 1 1 4 4 3 1 Haemolysin XhlA CLZ PF16526.5 gi|313122689|ref|YP_004044616.1| - 0.00036 20.8 3.6 0.00078 19.8 0.9 2.6 2 0 0 2 2 2 1 C-terminal leucine zipper domain of cyclic nucleotide-gated channels Spectrin PF00435.21 gi|313122689|ref|YP_004044616.1| - 0.00043 20.7 3.9 0.45 11.0 0.4 2.9 2 0 0 2 2 2 2 Spectrin repeat FlaC_arch PF05377.11 gi|313122689|ref|YP_004044616.1| - 0.0017 18.7 0.6 0.0017 18.7 0.6 3.0 3 1 0 3 3 2 1 Flagella accessory protein C (FlaC) FPP PF05911.11 gi|313122689|ref|YP_004044616.1| - 0.002 16.4 1.3 0.002 16.4 1.3 1.8 2 0 0 2 2 2 1 Filament-like plant protein, long coiled-coil APG6_N PF17675.1 gi|313122689|ref|YP_004044616.1| - 0.0026 18.3 3.9 0.0026 18.3 3.9 2.0 2 0 0 2 2 2 1 Apg6 coiled-coil region PI3K_P85_iSH2 PF16454.5 gi|313122689|ref|YP_004044616.1| - 0.003 17.2 4.7 0.014 15.0 0.6 2.3 2 0 0 2 2 2 1 Phosphatidylinositol 3-kinase regulatory subunit P85 inter-SH2 domain ATG16 PF08614.11 gi|313122689|ref|YP_004044616.1| - 0.0032 17.7 1.2 0.0032 17.7 1.2 2.3 3 0 0 3 3 2 1 Autophagy protein 16 (ATG16) Snapin_Pallidin PF14712.6 gi|313122689|ref|YP_004044616.1| - 0.0033 17.8 4.2 0.014 15.8 0.6 2.6 2 0 0 2 2 2 1 Snapin/Pallidin Nnf1 PF03980.14 gi|313122689|ref|YP_004044616.1| - 0.0061 16.9 1.5 0.049 14.0 0.5 2.5 2 0 0 2 2 2 1 Nnf1 DHR10 PF18595.1 gi|313122689|ref|YP_004044616.1| - 0.0063 16.6 4.1 0.0063 16.6 4.1 3.1 3 0 0 3 3 3 1 Designed helical repeat protein 10 domain HALZ PF02183.18 gi|313122689|ref|YP_004044616.1| - 0.0076 16.5 4.0 0.0076 16.5 4.0 2.7 2 1 1 3 3 2 1 Homeobox associated leucine zipper UPF0242 PF06785.11 gi|313122689|ref|YP_004044616.1| - 0.0076 16.4 1.9 0.0076 16.4 1.9 1.7 2 0 0 2 2 1 1 Uncharacterised protein family (UPF0242) N-terminus TSC22 PF01166.18 gi|313122689|ref|YP_004044616.1| - 0.0086 16.4 3.5 4.1 7.8 2.4 3.0 1 1 1 2 2 2 0 TSC-22/dip/bun family BLOC1_2 PF10046.9 gi|313122689|ref|YP_004044616.1| - 0.0091 16.3 7.3 0.025 14.9 0.8 2.9 3 0 0 3 3 3 1 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF2746 PF10874.8 gi|313122689|ref|YP_004044616.1| - 0.013 16.0 0.5 0.013 16.0 0.5 2.2 2 1 1 3 3 1 0 Protein of unknown function (DUF2746) bZIP_1 PF00170.21 gi|313122689|ref|YP_004044616.1| - 0.013 15.5 2.8 0.041 14.0 2.8 1.9 1 0 0 1 1 1 0 bZIP transcription factor TPR_MLP1_2 PF07926.12 gi|313122689|ref|YP_004044616.1| - 0.019 15.0 1.8 0.019 15.0 1.8 2.6 2 1 0 2 2 2 0 TPR/MLP1/MLP2-like protein DUF1192 PF06698.11 gi|313122689|ref|YP_004044616.1| - 0.022 14.8 1.4 0.022 14.8 1.4 2.3 2 0 0 2 2 1 0 Protein of unknown function (DUF1192) COG5 PF10392.9 gi|313122689|ref|YP_004044616.1| - 0.024 14.8 4.8 0.069 13.3 0.2 2.7 3 1 0 3 3 2 0 Golgi transport complex subunit 5 CENP-Q PF13094.6 gi|313122689|ref|YP_004044616.1| - 0.024 14.8 3.6 0.024 14.8 3.6 2.2 2 1 0 2 2 2 0 CENP-Q, a CENPA-CAD centromere complex subunit Spc24 PF08286.11 gi|313122689|ref|YP_004044616.1| - 0.029 14.6 1.1 0.029 14.6 1.1 2.3 3 0 0 3 3 2 0 Spc24 subunit of Ndc80 SlyX PF04102.12 gi|313122689|ref|YP_004044616.1| - 0.034 14.8 5.5 0.17 12.5 1.9 2.8 2 0 0 2 2 2 0 SlyX DUF4472 PF14739.6 gi|313122689|ref|YP_004044616.1| - 0.043 14.6 3.4 0.045 14.5 0.7 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4472) Prefoldin_2 PF01920.20 gi|313122689|ref|YP_004044616.1| - 0.049 13.6 0.8 0.049 13.6 0.8 3.1 3 1 0 3 3 3 0 Prefoldin subunit GAS PF13851.6 gi|313122689|ref|YP_004044616.1| - 0.051 12.9 4.0 0.25 10.7 1.0 2.4 2 0 0 2 2 2 0 Growth-arrest specific micro-tubule binding bZIP_2 PF07716.15 gi|313122689|ref|YP_004044616.1| - 0.066 13.3 0.9 0.066 13.3 0.9 3.2 2 1 1 3 3 3 0 Basic region leucine zipper TMF_TATA_bd PF12325.8 gi|313122689|ref|YP_004044616.1| - 0.072 13.3 8.0 0.053 13.7 3.2 2.4 2 0 0 2 2 2 0 TATA element modulatory factor 1 TATA binding KASH_CCD PF14662.6 gi|313122689|ref|YP_004044616.1| - 0.074 12.9 7.2 0.042 13.7 2.1 2.1 1 1 1 2 2 2 0 Coiled-coil region of CCDC155 or KASH DUF1664 PF07889.12 gi|313122689|ref|YP_004044616.1| - 0.13 12.3 5.9 0.55 10.3 0.1 2.8 3 0 0 3 3 2 0 Protein of unknown function (DUF1664) DUF4407 PF14362.6 gi|313122689|ref|YP_004044616.1| - 0.14 11.5 4.5 0.15 11.4 0.5 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4407) Fez1 PF06818.15 gi|313122689|ref|YP_004044616.1| - 0.14 12.6 5.2 0.24 11.9 5.2 1.6 1 1 0 1 1 1 0 Fez1 NPV_P10 PF05531.12 gi|313122689|ref|YP_004044616.1| - 0.16 12.5 0.2 0.16 12.5 0.2 3.6 3 1 1 4 4 3 0 Nucleopolyhedrovirus P10 protein Fmp27_WPPW PF10359.9 gi|313122689|ref|YP_004044616.1| - 0.23 10.3 7.4 0.33 9.8 5.1 1.9 1 1 1 2 2 2 0 RNA pol II promoter Fmp27 protein domain ADIP PF11559.8 gi|313122689|ref|YP_004044616.1| - 0.25 11.4 6.2 0.1 12.7 1.1 2.3 2 0 0 2 2 2 0 Afadin- and alpha -actinin-Binding Phage_GP20 PF06810.11 gi|313122689|ref|YP_004044616.1| - 0.27 11.0 6.8 0.14 12.0 1.2 2.5 2 1 0 2 2 2 0 Phage minor structural protein GP20 FlxA PF14282.6 gi|313122689|ref|YP_004044616.1| - 0.3 11.1 5.5 1.7 8.7 0.2 2.8 3 0 0 3 3 2 0 FlxA-like protein UPF0184 PF03670.13 gi|313122689|ref|YP_004044616.1| - 0.31 11.5 6.4 0.16 12.4 2.0 2.6 3 0 0 3 3 2 0 Uncharacterised protein family (UPF0184) DUF2968 PF11180.8 gi|313122689|ref|YP_004044616.1| - 0.31 10.6 4.0 0.17 11.5 0.3 2.2 2 0 0 2 2 2 0 Protein of unknown function (DUF2968) DUF2205 PF10224.9 gi|313122689|ref|YP_004044616.1| - 0.33 11.0 6.4 0.9 9.6 1.9 3.1 2 1 1 3 3 2 0 Short coiled-coil protein HDV_ag PF01517.18 gi|313122689|ref|YP_004044616.1| - 0.37 10.6 2.7 0.89 9.3 0.2 2.2 2 0 0 2 2 2 0 Hepatitis delta virus delta antigen Spc7 PF08317.11 gi|313122689|ref|YP_004044616.1| - 0.43 9.4 9.0 1.3 7.8 9.0 1.7 1 1 0 1 1 1 0 Spc7 kinetochore protein Fib_alpha PF08702.10 gi|313122689|ref|YP_004044616.1| - 0.45 10.7 3.9 3 8.0 0.1 2.8 3 0 0 3 3 2 0 Fibrinogen alpha/beta chain family Wbp11 PF09429.10 gi|313122689|ref|YP_004044616.1| - 0.45 10.9 13.3 2.5 8.6 0.1 3.3 3 0 0 3 3 3 0 WW domain binding protein 11 DUF4618 PF15397.6 gi|313122689|ref|YP_004044616.1| - 0.46 9.9 5.8 0.24 10.8 0.3 2.4 3 0 0 3 3 2 0 Domain of unknown function (DUF4618) DUF3450 PF11932.8 gi|313122689|ref|YP_004044616.1| - 0.62 9.3 9.7 0.07 12.4 0.8 2.7 3 0 0 3 3 3 0 Protein of unknown function (DUF3450) ZapB PF06005.12 gi|313122689|ref|YP_004044616.1| - 0.78 10.2 9.7 0.046 14.2 2.5 2.5 3 0 0 3 3 2 0 Cell division protein ZapB TraF_2 PF13729.6 gi|313122689|ref|YP_004044616.1| - 0.8 9.0 7.8 1.5 8.2 4.5 2.4 1 1 1 2 2 2 0 F plasmid transfer operon, TraF, protein DUF16 PF01519.16 gi|313122689|ref|YP_004044616.1| - 0.82 10.2 4.3 1 9.8 0.0 2.7 3 1 0 3 3 2 0 Protein of unknown function DUF16 Baculo_PEP_C PF04513.12 gi|313122689|ref|YP_004044616.1| - 0.83 9.7 4.5 2.7 8.0 0.5 2.5 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus DUF4795 PF16043.5 gi|313122689|ref|YP_004044616.1| - 0.93 9.1 6.6 2.6 7.6 0.5 2.2 2 0 0 2 2 2 0 Domain of unknown function (DUF4795) HSBP1 PF06825.12 gi|313122689|ref|YP_004044616.1| - 1.1 9.2 5.7 0.69 9.8 1.1 2.8 1 1 1 2 2 2 0 Heat shock factor binding protein 1 TMF_DNA_bd PF12329.8 gi|313122689|ref|YP_004044616.1| - 1.4 9.0 7.8 0.88 9.6 2.0 2.8 2 1 1 3 3 2 0 TATA element modulatory factor 1 DNA binding CENP-H PF05837.12 gi|313122689|ref|YP_004044616.1| - 1.5 9.2 8.4 0.48 10.9 0.5 2.9 3 0 0 3 3 3 0 Centromere protein H (CENP-H) YabA PF06156.13 gi|313122689|ref|YP_004044616.1| - 2.5 8.8 6.7 9.9 6.9 4.2 2.6 2 1 0 2 2 1 0 Initiation control protein YabA DivIVA PF05103.13 gi|313122689|ref|YP_004044616.1| - 2.6 8.1 6.7 1.2 9.2 0.9 2.6 3 0 0 3 3 2 0 DivIVA protein End3 PF12761.7 gi|313122689|ref|YP_004044616.1| - 2.9 8.0 11.7 2.6 8.2 0.4 2.7 3 0 0 3 3 2 0 Actin cytoskeleton-regulatory complex protein END3 DMPK_coil PF08826.10 gi|313122689|ref|YP_004044616.1| - 2.9 8.1 11.7 0.95 9.6 3.4 3.0 3 0 0 3 3 2 0 DMPK coiled coil domain like DUF4164 PF13747.6 gi|313122689|ref|YP_004044616.1| - 3.8 7.8 16.3 0.15 12.4 6.7 2.7 3 0 0 3 3 2 0 Domain of unknown function (DUF4164) DivIC PF04977.15 gi|313122689|ref|YP_004044616.1| - 4.3 7.2 14.5 2.5 7.9 3.2 3.4 3 1 1 4 4 4 0 Septum formation initiator Geminin PF07412.12 gi|313122689|ref|YP_004044616.1| - 5.4 6.7 11.4 0.076 12.8 3.3 2.0 3 0 0 3 3 1 0 Geminin DASH_Dam1 PF08653.10 gi|313122689|ref|YP_004044616.1| - 7.5 6.4 5.4 5.2 6.9 0.8 3.0 3 1 1 4 4 2 0 DASH complex subunit Dam1 Pox_A_type_inc PF04508.12 gi|313122689|ref|YP_004044616.1| - 7.9 6.5 8.6 26 4.9 2.2 3.6 3 1 1 4 4 4 0 Viral A-type inclusion protein repeat PCNA_N PF00705.18 gi|313122690|ref|YP_004044617.1| - 6.6e-06 25.9 0.0 1.2e-05 25.0 0.0 1.4 1 0 0 1 1 1 1 Proliferating cell nuclear antigen, N-terminal domain PCNA_C PF02747.15 gi|313122690|ref|YP_004044617.1| - 0.065 13.4 0.0 0.11 12.6 0.0 1.4 1 0 0 1 1 1 0 Proliferating cell nuclear antigen, C-terminal domain Hus1 PF04005.12 gi|313122690|ref|YP_004044617.1| - 0.083 12.0 0.0 0.12 11.5 0.0 1.2 1 0 0 1 1 1 0 Hus1-like protein TusA PF01206.17 gi|313122690|ref|YP_004044617.1| - 0.085 12.7 0.1 1.9 8.4 0.0 2.4 2 0 0 2 2 2 0 Sulfurtransferase TusA DUF2218 PF09981.9 gi|313122690|ref|YP_004044617.1| - 0.2 12.1 0.4 1.5 9.3 0.1 2.2 2 0 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2218) AAA_22 PF13401.6 gi|313122692|ref|YP_004044619.1| - 1.2e-11 45.0 0.0 2.4e-11 44.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain Cdc6_C PF09079.11 gi|313122692|ref|YP_004044619.1| - 7e-08 32.4 0.2 3.9e-07 30.0 0.1 2.4 2 0 0 2 2 2 1 CDC6, C terminal winged helix domain AAA_16 PF13191.6 gi|313122692|ref|YP_004044619.1| - 1.3e-07 32.1 5.7 1.9e-07 31.6 3.2 2.4 2 1 0 2 2 2 1 AAA ATPase domain AAA_30 PF13604.6 gi|313122692|ref|YP_004044619.1| - 4.3e-05 23.3 0.1 8.7e-05 22.3 0.1 1.5 1 0 0 1 1 1 1 AAA domain AAA_19 PF13245.6 gi|313122692|ref|YP_004044619.1| - 6.1e-05 23.4 0.6 0.00016 22.1 0.6 1.7 1 1 0 1 1 1 1 AAA domain TniB PF05621.11 gi|313122692|ref|YP_004044619.1| - 0.0022 17.4 0.0 0.0037 16.7 0.0 1.3 1 0 0 1 1 1 1 Bacterial TniB protein AAA_5 PF07728.14 gi|313122692|ref|YP_004044619.1| - 0.0042 17.1 0.0 0.0097 15.9 0.0 1.7 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA_7 PF12775.7 gi|313122692|ref|YP_004044619.1| - 0.0057 16.2 0.0 0.011 15.3 0.0 1.3 1 0 0 1 1 1 1 P-loop containing dynein motor region DEAD PF00270.29 gi|313122692|ref|YP_004044619.1| - 0.0061 16.4 0.3 0.66 9.7 0.0 2.2 1 1 1 2 2 2 1 DEAD/DEAH box helicase AAA PF00004.29 gi|313122692|ref|YP_004044619.1| - 0.0061 17.0 0.0 0.018 15.5 0.0 1.9 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_18 PF13238.6 gi|313122692|ref|YP_004044619.1| - 0.0063 17.1 0.0 0.019 15.5 0.0 1.9 1 1 1 2 2 2 1 AAA domain Zeta_toxin PF06414.12 gi|313122692|ref|YP_004044619.1| - 0.012 14.9 0.0 0.025 13.9 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin AAA_assoc_2 PF16193.5 gi|313122692|ref|YP_004044619.1| - 0.013 15.8 1.3 0.019 15.3 0.2 1.8 2 0 0 2 2 1 0 AAA C-terminal domain DUF815 PF05673.13 gi|313122692|ref|YP_004044619.1| - 0.015 14.5 0.0 0.024 13.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF815) T2SSE PF00437.20 gi|313122692|ref|YP_004044619.1| - 0.019 14.0 0.0 0.032 13.3 0.0 1.5 1 0 0 1 1 1 0 Type II/IV secretion system protein ATPase_2 PF01637.18 gi|313122692|ref|YP_004044619.1| - 0.027 14.4 0.0 0.8 9.6 0.0 2.3 1 1 0 1 1 1 0 ATPase domain predominantly from Archaea Bac_DnaA PF00308.18 gi|313122692|ref|YP_004044619.1| - 0.064 13.1 0.0 0.17 11.7 0.0 1.7 2 0 0 2 2 2 0 Bacterial dnaA protein AAA_14 PF13173.6 gi|313122692|ref|YP_004044619.1| - 0.067 13.2 0.0 0.13 12.3 0.0 1.5 1 0 0 1 1 1 0 AAA domain ResIII PF04851.15 gi|313122692|ref|YP_004044619.1| - 0.091 12.8 0.0 0.2 11.6 0.0 1.5 1 1 0 1 1 1 0 Type III restriction enzyme, res subunit AAA_29 PF13555.6 gi|313122692|ref|YP_004044619.1| - 0.11 12.2 0.2 0.29 10.9 0.0 1.7 2 0 0 2 2 1 0 P-loop containing region of AAA domain Penicillinase_R PF03965.16 gi|313122692|ref|YP_004044619.1| - 0.15 12.4 0.1 0.44 10.9 0.0 1.8 2 0 0 2 2 1 0 Penicillinase repressor Cdc6_C PF09079.11 gi|313122695|ref|YP_004044622.1| - 1.9e-16 59.8 0.5 5.6e-16 58.3 0.1 2.1 2 0 0 2 2 2 1 CDC6, C terminal winged helix domain AAA_22 PF13401.6 gi|313122695|ref|YP_004044622.1| - 5.6e-14 52.6 0.0 1.5e-13 51.2 0.0 1.8 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.6 gi|313122695|ref|YP_004044622.1| - 4.8e-11 43.3 3.3 1.6e-08 35.1 3.3 3.2 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.29 gi|313122695|ref|YP_004044622.1| - 6.5e-06 26.6 0.0 2.1e-05 25.0 0.0 1.9 1 0 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) NACHT PF05729.12 gi|313122695|ref|YP_004044622.1| - 1.2e-05 25.3 0.0 2.7e-05 24.1 0.0 1.6 2 0 0 2 2 2 1 NACHT domain ATPase_2 PF01637.18 gi|313122695|ref|YP_004044622.1| - 3.2e-05 24.0 0.1 8.6e-05 22.6 0.1 1.8 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea TniB PF05621.11 gi|313122695|ref|YP_004044622.1| - 0.00024 20.6 0.0 0.00049 19.6 0.0 1.4 1 0 0 1 1 1 1 Bacterial TniB protein DEAD PF00270.29 gi|313122695|ref|YP_004044622.1| - 0.00025 20.9 0.3 0.36 10.6 0.0 2.5 1 1 1 2 2 2 2 DEAD/DEAH box helicase NB-ARC PF00931.22 gi|313122695|ref|YP_004044622.1| - 0.00085 18.6 0.0 0.0022 17.2 0.0 1.6 2 0 0 2 2 2 1 NB-ARC domain AAA_32 PF13654.6 gi|313122695|ref|YP_004044622.1| - 0.0012 17.7 0.2 0.46 9.2 0.0 2.6 3 0 0 3 3 3 2 AAA domain DUF815 PF05673.13 gi|313122695|ref|YP_004044622.1| - 0.0012 18.0 0.0 0.0022 17.2 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF815) AAA_7 PF12775.7 gi|313122695|ref|YP_004044622.1| - 0.0029 17.1 0.0 0.044 13.3 0.0 2.6 3 0 0 3 3 3 1 P-loop containing dynein motor region KAP_NTPase PF07693.14 gi|313122695|ref|YP_004044622.1| - 0.0093 15.2 2.3 0.21 10.8 0.0 2.8 2 1 1 3 3 3 1 KAP family P-loop domain RNA_helicase PF00910.22 gi|313122695|ref|YP_004044622.1| - 0.0097 16.3 0.0 0.026 14.9 0.0 1.7 1 0 0 1 1 1 1 RNA helicase AAA_24 PF13479.6 gi|313122695|ref|YP_004044622.1| - 0.012 15.4 0.0 0.022 14.5 0.0 1.4 1 0 0 1 1 1 0 AAA domain T2SSE PF00437.20 gi|313122695|ref|YP_004044622.1| - 0.012 14.6 0.0 0.034 13.2 0.0 1.7 1 0 0 1 1 1 0 Type II/IV secretion system protein Sigma54_activat PF00158.26 gi|313122695|ref|YP_004044622.1| - 0.015 15.0 0.0 0.028 14.1 0.0 1.5 1 0 0 1 1 1 0 Sigma-54 interaction domain DUF87 PF01935.17 gi|313122695|ref|YP_004044622.1| - 0.016 15.3 3.0 1.6 8.8 0.1 3.2 2 2 1 3 3 3 0 Helicase HerA, central domain Zeta_toxin PF06414.12 gi|313122695|ref|YP_004044622.1| - 0.02 14.2 0.0 0.051 12.9 0.0 1.6 1 0 0 1 1 1 0 Zeta toxin AAA_18 PF13238.6 gi|313122695|ref|YP_004044622.1| - 0.031 14.8 0.0 0.13 12.9 0.0 2.1 3 0 0 3 3 1 0 AAA domain AAA_5 PF07728.14 gi|313122695|ref|YP_004044622.1| - 0.033 14.2 0.0 11 6.0 0.0 3.1 3 0 0 3 3 3 0 AAA domain (dynein-related subfamily) AAA_2 PF07724.14 gi|313122695|ref|YP_004044622.1| - 0.042 13.9 0.0 0.099 12.7 0.0 1.6 1 0 0 1 1 1 0 AAA domain (Cdc48 subfamily) RuvB_N PF05496.12 gi|313122695|ref|YP_004044622.1| - 0.046 13.5 0.1 0.22 11.2 0.0 2.1 3 0 0 3 3 3 0 Holliday junction DNA helicase RuvB P-loop domain TIP49_C PF17856.1 gi|313122695|ref|YP_004044622.1| - 0.05 13.8 0.1 0.12 12.5 0.1 1.6 1 0 0 1 1 1 0 TIP49 AAA-lid domain RsgA_GTPase PF03193.16 gi|313122695|ref|YP_004044622.1| - 0.061 13.2 0.0 0.26 11.2 0.0 2.0 2 0 0 2 2 2 0 RsgA GTPase AAA_assoc_2 PF16193.5 gi|313122695|ref|YP_004044622.1| - 0.084 13.2 0.2 0.24 11.8 0.2 1.7 1 0 0 1 1 1 0 AAA C-terminal domain AAA_lid_4 PF17864.1 gi|313122695|ref|YP_004044622.1| - 0.099 12.4 0.1 0.33 10.7 0.1 1.9 1 0 0 1 1 1 0 RuvB AAA lid domain AAA_33 PF13671.6 gi|313122695|ref|YP_004044622.1| - 0.13 12.4 0.3 2 8.6 0.0 2.5 2 1 0 2 2 2 0 AAA domain ABC_tran PF00005.27 gi|313122695|ref|YP_004044622.1| - 0.15 12.5 0.2 0.46 11.0 0.0 2.0 2 1 0 2 2 2 0 ABC transporter ATPase_2 PF01637.18 gi|313122696|ref|YP_004044623.1| - 2.4e-25 89.8 0.0 2.5e-24 86.5 0.0 2.1 1 1 0 1 1 1 1 ATPase domain predominantly from Archaea DUF234 PF03008.14 gi|313122696|ref|YP_004044623.1| - 4.8e-17 62.2 0.0 9.4e-17 61.3 0.0 1.5 1 0 0 1 1 1 1 Archaea bacterial proteins of unknown function AAA_16 PF13191.6 gi|313122696|ref|YP_004044623.1| - 1.3e-06 28.9 0.1 2.9e-06 27.8 0.1 1.6 1 1 0 1 1 1 1 AAA ATPase domain AAA_22 PF13401.6 gi|313122696|ref|YP_004044623.1| - 6e-06 26.6 0.0 1.2e-05 25.6 0.0 1.4 1 0 0 1 1 1 1 AAA domain AAA_14 PF13173.6 gi|313122696|ref|YP_004044623.1| - 1.7e-05 24.9 0.0 2.9e-05 24.1 0.0 1.4 1 0 0 1 1 1 1 AAA domain HTH_IclR PF09339.10 gi|313122696|ref|YP_004044623.1| - 0.054 13.3 0.1 0.15 11.9 0.1 1.7 1 0 0 1 1 1 0 IclR helix-turn-helix domain DUF4143 PF13635.6 gi|313122696|ref|YP_004044623.1| - 0.11 12.6 0.0 0.21 11.7 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4143) Acetyltransf_1 PF00583.25 gi|313122697|ref|YP_004044624.1| - 8.1e-19 68.0 0.2 1e-18 67.6 0.2 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) family Acetyltransf_10 PF13673.7 gi|313122697|ref|YP_004044624.1| - 7.8e-18 64.6 0.0 1e-17 64.2 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_4 PF13420.7 gi|313122697|ref|YP_004044624.1| - 1.7e-15 57.5 0.2 2.1e-15 57.2 0.2 1.0 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_7 PF13508.7 gi|313122697|ref|YP_004044624.1| - 3.3e-15 56.3 0.1 4.9e-15 55.7 0.1 1.2 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain FR47 PF08445.10 gi|313122697|ref|YP_004044624.1| - 3.2e-09 36.6 0.0 5.7e-09 35.8 0.0 1.4 1 0 0 1 1 1 1 FR47-like protein Acetyltransf_9 PF13527.7 gi|313122697|ref|YP_004044624.1| - 2e-08 34.3 0.4 1.8e-07 31.3 0.4 2.1 1 1 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_3 PF13302.7 gi|313122697|ref|YP_004044624.1| - 5.5e-08 33.6 0.6 6.5e-08 33.3 0.6 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain Acetyltransf_13 PF13880.6 gi|313122697|ref|YP_004044624.1| - 0.00039 20.3 0.0 0.00071 19.5 0.0 1.4 1 0 0 1 1 1 1 ESCO1/2 acetyl-transferase Acetyltransf_6 PF13480.7 gi|313122697|ref|YP_004044624.1| - 0.0027 17.8 0.0 0.0036 17.5 0.0 1.1 1 0 0 1 1 1 1 Acetyltransferase (GNAT) domain AstA PF04958.12 gi|313122697|ref|YP_004044624.1| - 0.025 13.1 0.1 0.15 10.5 0.0 1.9 1 1 1 2 2 2 0 Arginine N-succinyltransferase beta subunit DUF4821 PF16092.5 gi|313122697|ref|YP_004044624.1| - 0.029 14.0 0.5 0.063 12.9 0.5 1.6 1 1 0 1 1 1 0 Domain of unknown function (DUF4821) Acetyltransf_CG PF14542.6 gi|313122697|ref|YP_004044624.1| - 0.07 13.3 0.0 0.13 12.4 0.0 1.5 1 0 0 1 1 1 0 GCN5-related N-acetyl-transferase AMP-binding PF00501.28 gi|313122698|ref|YP_004044625.1| - 2.5e-87 293.2 0.1 3.6e-87 292.7 0.1 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|313122698|ref|YP_004044625.1| - 8.9e-19 68.3 0.8 2e-18 67.2 0.8 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|313122698|ref|YP_004044625.1| - 8.6e-11 41.6 2.2 2e-10 40.4 2.2 1.6 1 0 0 1 1 1 1 Acetyl-coenzyme A synthetase N-terminus DMRL_synthase PF00885.19 gi|313122698|ref|YP_004044625.1| - 0.027 14.3 1.1 2.6 7.9 0.0 2.2 2 0 0 2 2 2 0 6,7-dimethyl-8-ribityllumazine synthase BAT PF15915.5 gi|313122699|ref|YP_004044626.1| - 6.8e-41 139.7 7.0 6.8e-41 139.7 7.0 2.4 2 1 0 2 2 2 1 GAF and HTH_10 associated domain HTH_10 PF04967.12 gi|313122699|ref|YP_004044626.1| - 1.1e-20 73.2 0.0 3.5e-20 71.5 0.0 2.0 1 0 0 1 1 1 1 HTH DNA binding domain GAF_2 PF13185.6 gi|313122699|ref|YP_004044626.1| - 4.7e-09 36.7 0.8 1.1e-08 35.5 0.8 1.7 1 0 0 1 1 1 1 GAF domain GAF_3 PF13492.6 gi|313122699|ref|YP_004044626.1| - 6.8e-08 32.9 0.2 1.5e-07 31.8 0.2 1.6 1 0 0 1 1 1 1 GAF domain Phage_integrase PF00589.22 gi|313122699|ref|YP_004044626.1| - 8.4e-06 25.7 0.0 0.00014 21.7 0.0 2.4 2 0 0 2 2 2 1 Phage integrase family GAF PF01590.26 gi|313122699|ref|YP_004044626.1| - 0.008 16.8 0.0 0.019 15.6 0.0 1.7 1 0 0 1 1 1 1 GAF domain Sigma70_r4 PF04545.16 gi|313122699|ref|YP_004044626.1| - 0.019 14.5 0.0 0.064 12.8 0.0 1.9 1 0 0 1 1 1 0 Sigma-70, region 4 MarR_2 PF12802.7 gi|313122699|ref|YP_004044626.1| - 0.05 13.5 0.3 14 5.7 0.0 3.0 2 0 0 2 2 2 0 MarR family GerE PF00196.19 gi|313122699|ref|YP_004044626.1| - 0.096 12.3 0.0 0.33 10.5 0.0 1.9 1 1 0 1 1 1 0 Bacterial regulatory proteins, luxR family HTH_24 PF13412.6 gi|313122699|ref|YP_004044626.1| - 0.13 11.9 0.1 0.43 10.2 0.0 2.0 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding AMP-binding PF00501.28 gi|313122700|ref|YP_004044627.1| - 4.2e-90 302.3 0.0 5e-90 302.1 0.0 1.0 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.6 gi|313122700|ref|YP_004044627.1| - 7.1e-23 81.4 0.3 1.4e-22 80.5 0.3 1.5 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain ACAS_N PF16177.5 gi|313122700|ref|YP_004044627.1| - 1e-14 54.1 3.1 4.7e-14 52.0 3.1 2.2 1 0 0 1 1 1 1 Acetyl-coenzyme A synthetase N-terminus DUF4212 PF13937.6 gi|313122701|ref|YP_004044628.1| - 1.2e-20 73.7 0.1 1.5e-20 73.4 0.1 1.1 1 0 0 1 1 1 1 Domain of unknown function (DUF4212) DUF485 PF04341.12 gi|313122701|ref|YP_004044628.1| - 0.0026 17.7 0.4 0.0037 17.2 0.4 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF485 SSF PF00474.17 gi|313122702|ref|YP_004044629.1| - 6e-55 186.8 34.5 8.9e-55 186.2 34.5 1.3 1 0 0 1 1 1 1 Sodium:solute symporter family Ycf9 PF01737.17 gi|313122702|ref|YP_004044629.1| - 0.0098 15.7 2.9 2.4 8.1 0.0 3.6 2 0 0 2 2 2 2 YCF9 UFC1 PF08694.11 gi|313122702|ref|YP_004044629.1| - 0.2 11.3 0.2 0.37 10.4 0.2 1.4 1 0 0 1 1 1 0 Ubiquitin-fold modifier-conjugating enzyme 1 Usp PF00582.26 gi|313122703|ref|YP_004044630.1| - 4.4e-39 134.2 1.4 5.3e-39 133.9 1.4 1.1 1 0 0 1 1 1 1 Universal stress protein family YrzK PF17449.2 gi|313122703|ref|YP_004044630.1| - 0.078 13.3 0.1 0.18 12.1 0.1 1.6 1 0 0 1 1 1 0 Uncharacterized YrzK-like TMEM208_SND2 PF05620.11 gi|313122704|ref|YP_004044631.1| - 0.071 12.9 0.2 0.08 12.7 0.2 1.0 1 0 0 1 1 1 0 SRP-independent targeting protein 2/TMEM208 Abhydrolase_1 PF00561.20 gi|313122705|ref|YP_004044632.1| - 4.3e-23 82.3 0.0 1.5e-17 64.1 0.1 2.1 1 1 1 2 2 2 2 alpha/beta hydrolase fold Abhydrolase_6 PF12697.7 gi|313122705|ref|YP_004044632.1| - 1.8e-19 71.3 0.9 2e-19 71.1 0.9 1.0 1 0 0 1 1 1 1 Alpha/beta hydrolase family Hydrolase_4 PF12146.8 gi|313122705|ref|YP_004044632.1| - 2.6e-16 59.6 0.1 6.4e-16 58.3 0.1 1.6 1 1 0 1 1 1 1 Serine aminopeptidase, S33 UPF0227 PF05728.12 gi|313122705|ref|YP_004044632.1| - 1.3e-05 25.2 0.0 2e-05 24.6 0.0 1.2 1 0 0 1 1 1 1 Uncharacterised protein family (UPF0227) Ndr PF03096.14 gi|313122705|ref|YP_004044632.1| - 6e-05 21.9 0.0 0.00023 19.9 0.0 1.7 1 1 1 2 2 2 1 Ndr family Thioesterase PF00975.20 gi|313122705|ref|YP_004044632.1| - 0.00021 21.5 0.0 0.00023 21.4 0.0 1.3 1 1 0 1 1 1 1 Thioesterase domain DUF2048 PF09752.9 gi|313122705|ref|YP_004044632.1| - 0.0057 15.8 0.0 0.023 13.8 0.0 1.8 2 0 0 2 2 2 1 Abhydrolase domain containing 18 Patatin PF01734.22 gi|313122705|ref|YP_004044632.1| - 0.0086 16.3 0.1 0.016 15.4 0.1 1.6 1 1 0 1 1 1 1 Patatin-like phospholipase Esterase PF00756.20 gi|313122705|ref|YP_004044632.1| - 0.015 15.0 0.0 0.015 15.0 0.0 1.3 1 0 0 1 1 1 0 Putative esterase PGAP1 PF07819.13 gi|313122705|ref|YP_004044632.1| - 0.024 14.4 0.4 7.6 6.2 0.0 2.6 2 1 1 3 3 3 0 PGAP1-like protein Esterase_phd PF10503.9 gi|313122705|ref|YP_004044632.1| - 0.028 13.9 0.1 0.27 10.7 0.0 2.1 2 0 0 2 2 2 0 Esterase PHB depolymerase FSH1 PF03959.13 gi|313122705|ref|YP_004044632.1| - 0.16 11.6 0.0 0.26 10.9 0.0 1.3 1 1 0 1 1 1 0 Serine hydrolase (FSH1) DoxX PF07681.12 gi|313122706|ref|YP_004044633.1| - 2.9e-21 75.8 14.1 5.1e-21 75.0 14.1 1.4 1 0 0 1 1 1 1 DoxX DoxD PF04173.13 gi|313122706|ref|YP_004044633.1| - 0.00057 19.8 2.8 0.00099 19.0 2.8 1.5 1 0 0 1 1 1 1 TQO small subunit DoxD SseC PF04888.12 gi|313122706|ref|YP_004044633.1| - 0.97 9.0 2.6 1.5 8.4 2.6 1.2 1 0 0 1 1 1 0 Secretion system effector C (SseC) like family PQQ_3 PF13570.6 gi|313122708|ref|YP_004044635.1| - 1.4e-61 203.6 45.5 4.7e-11 42.8 1.0 8.1 8 0 0 8 8 8 8 PQQ-like domain PQQ_2 PF13360.6 gi|313122708|ref|YP_004044635.1| - 8.2e-51 172.9 17.5 5.4e-18 65.4 2.8 3.5 1 1 2 3 3 3 3 PQQ-like domain PQQ PF01011.21 gi|313122708|ref|YP_004044635.1| - 1.2e-49 164.0 16.9 6.4e-08 32.2 0.2 7.3 7 0 0 7 7 7 7 PQQ enzyme repeat DUF5074 PF16819.5 gi|313122708|ref|YP_004044635.1| - 0.00024 21.1 0.1 3.5 7.7 0.0 3.7 3 1 1 4 4 4 1 Domain of unknown function (DUF5074) PsbP PF01789.16 gi|313122708|ref|YP_004044635.1| - 0.00057 20.1 0.0 29 4.8 0.0 4.4 3 1 2 5 5 5 0 PsbP SUKH-4 PF14435.6 gi|313122708|ref|YP_004044635.1| - 0.00072 19.6 7.6 1.8 8.6 0.4 4.1 1 1 2 4 4 4 2 SUKH-4 immunity protein Tachylectin PF14517.6 gi|313122708|ref|YP_004044635.1| - 0.00074 19.1 5.1 0.16 11.5 0.6 3.4 1 1 2 3 3 3 2 Tachylectin DUF1150 PF06620.11 gi|313122708|ref|YP_004044635.1| - 0.026 14.6 1.7 15 5.8 0.0 4.7 6 0 0 6 6 6 0 Protein of unknown function (DUF1150) Me-amine-dh_H PF06433.11 gi|313122708|ref|YP_004044635.1| - 0.1 11.4 0.0 1.8 7.3 0.0 2.4 1 1 1 2 2 2 0 Methylamine dehydrogenase heavy chain (MADH) MHC_II_alpha PF00993.20 gi|313122708|ref|YP_004044635.1| - 0.13 12.0 1.6 9.1 6.0 0.0 3.1 1 1 2 3 3 3 0 Class II histocompatibility antigen, alpha domain Lipoprotein_15 PF03640.15 gi|313122708|ref|YP_004044635.1| - 1.1 8.9 6.1 0.23 11.0 0.3 3.0 3 0 0 3 3 3 0 Secreted repeat of unknown function PQQ_3 PF13570.6 gi|313122709|ref|YP_004044636.1| - 4.2e-74 243.4 29.2 5.9e-13 48.9 0.7 8.3 8 0 0 8 8 8 8 PQQ-like domain PQQ_2 PF13360.6 gi|313122709|ref|YP_004044636.1| - 1.1e-50 172.4 6.3 2.3e-32 112.5 1.6 3.4 2 2 0 2 2 2 2 PQQ-like domain PQQ PF01011.21 gi|313122709|ref|YP_004044636.1| - 1.4e-48 160.6 17.3 9.7e-11 41.1 0.1 9.0 9 0 0 9 9 9 5 PQQ enzyme repeat SUKH-4 PF14435.6 gi|313122709|ref|YP_004044636.1| - 6.6e-05 23.0 1.1 0.27 11.3 0.0 4.1 3 3 1 4 4 4 2 SUKH-4 immunity protein Arylsulfotrans PF05935.11 gi|313122709|ref|YP_004044636.1| - 0.012 14.6 0.0 8.1 5.2 0.0 3.3 2 1 2 4 4 4 0 Arylsulfotransferase (ASST) DUF4394 PF14339.6 gi|313122709|ref|YP_004044636.1| - 0.08 12.3 0.2 5.6 6.2 0.0 3.4 2 2 2 4 4 4 0 Domain of unknown function (DUF4394) DUF4905 PF16248.5 gi|313122709|ref|YP_004044636.1| - 0.1 12.5 0.3 2.8 7.9 0.0 3.0 3 0 0 3 3 3 0 Domain of unknown function (DUF4905) Glycos_transf_2 PF00535.26 gi|313122709|ref|YP_004044636.1| - 0.17 11.7 0.1 0.31 10.8 0.1 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 2 RHS PF03527.14 gi|313122709|ref|YP_004044636.1| - 6.1 6.7 7.8 7 6.5 0.1 4.5 6 0 0 6 6 6 0 RHS protein DUF4382 PF14321.6 gi|313122710|ref|YP_004044637.1| - 4.8e-30 104.6 0.9 4.8e-30 104.6 0.9 2.3 2 1 0 2 2 2 1 Domain of unknown function (DUF4382) DUF4198 PF10670.9 gi|313122710|ref|YP_004044637.1| - 0.00032 21.1 11.4 0.055 13.8 0.3 3.5 2 1 1 3 3 3 2 Domain of unknown function (DUF4198) CarboxypepD_reg PF13620.6 gi|313122710|ref|YP_004044637.1| - 0.00036 20.8 18.4 0.001 19.3 1.3 3.9 3 1 0 3 3 3 2 Carboxypeptidase regulatory-like domain CarbopepD_reg_2 PF13715.6 gi|313122710|ref|YP_004044637.1| - 0.00043 20.2 11.8 0.051 13.6 0.7 3.6 3 2 0 3 3 3 2 CarboxypepD_reg-like domain DUF3558 PF12079.8 gi|313122710|ref|YP_004044637.1| - 0.0039 17.2 1.4 0.011 15.8 1.4 1.9 1 0 0 1 1 1 1 Protein of unknown function (DUF3558) PEGA PF08308.11 gi|313122710|ref|YP_004044637.1| - 0.1 12.5 4.4 6.9 6.6 0.5 3.6 2 1 0 2 2 2 0 PEGA domain DUF3126 PF11324.8 gi|313122710|ref|YP_004044637.1| - 0.68 9.8 7.5 3.9 7.4 0.1 4.1 3 1 1 4 4 4 0 Protein of unknown function (DUF3126) DUF2969 PF11184.8 gi|313122710|ref|YP_004044637.1| - 2.5 8.6 5.8 6.6 7.2 0.2 3.2 3 1 0 3 3 3 0 Protein of unknown function (DUF2969) Nitroreductase PF00881.24 gi|313122711|ref|YP_004044638.1| - 4.9e-14 52.7 0.0 5.3e-09 36.3 0.0 2.3 2 0 0 2 2 2 2 Nitroreductase family Sugar_tr PF00083.24 gi|313122713|ref|YP_004044640.1| - 6.4e-125 417.5 23.9 7.4e-125 417.3 23.9 1.0 1 0 0 1 1 1 1 Sugar (and other) transporter MFS_1 PF07690.16 gi|313122713|ref|YP_004044640.1| - 2.9e-40 138.3 62.3 1.3e-31 109.8 22.8 2.0 1 1 1 2 2 2 2 Major Facilitator Superfamily TRI12 PF06609.13 gi|313122713|ref|YP_004044640.1| - 1e-08 34.1 2.3 1e-08 34.1 2.3 2.0 2 0 0 2 2 2 1 Fungal trichothecene efflux pump (TRI12) MFS_1_like PF12832.7 gi|313122713|ref|YP_004044640.1| - 0.00024 20.1 0.4 0.00024 20.1 0.4 2.5 1 1 0 2 2 2 1 MFS_1 like family OATP PF03137.20 gi|313122713|ref|YP_004044640.1| - 0.064 11.5 9.6 1.2 7.3 1.7 3.0 1 1 1 2 2 2 0 Organic Anion Transporter Polypeptide (OATP) family Bac_export_3 PF01313.19 gi|313122713|ref|YP_004044640.1| - 0.069 13.1 0.1 0.069 13.1 0.1 3.7 4 0 0 4 4 4 0 Bacterial export proteins, family 3 SBF PF01758.16 gi|313122714|ref|YP_004044641.1| - 1.1e-11 44.8 14.1 2e-11 44.0 14.1 1.5 1 0 0 1 1 1 1 Sodium Bile acid symporter family SBF_like PF13593.6 gi|313122714|ref|YP_004044641.1| - 6.5e-08 32.2 16.6 9.1e-08 31.8 16.6 1.3 1 1 0 1 1 1 1 SBF-like CPA transporter family (DUF4137) HxlR PF01638.17 gi|313122715|ref|YP_004044642.1| - 3.1e-20 71.8 0.0 3.8e-20 71.5 0.0 1.1 1 0 0 1 1 1 1 HxlR-like helix-turn-helix PadR PF03551.14 gi|313122715|ref|YP_004044642.1| - 4e-05 23.5 0.3 6e-05 22.9 0.3 1.3 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family MarR PF01047.22 gi|313122715|ref|YP_004044642.1| - 0.00017 21.5 0.0 0.00024 21.0 0.0 1.3 1 0 0 1 1 1 1 MarR family MarR_2 PF12802.7 gi|313122715|ref|YP_004044642.1| - 0.0015 18.4 0.0 0.0024 17.7 0.0 1.3 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.7 gi|313122715|ref|YP_004044642.1| - 0.002 18.1 0.0 0.0036 17.3 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_34 PF13601.6 gi|313122715|ref|YP_004044642.1| - 0.0085 16.2 0.0 0.011 15.9 0.0 1.2 1 0 0 1 1 1 1 Winged helix DNA-binding domain Penicillinase_R PF03965.16 gi|313122715|ref|YP_004044642.1| - 0.015 15.7 0.0 0.023 15.1 0.0 1.3 1 0 0 1 1 1 0 Penicillinase repressor HTH_27 PF13463.6 gi|313122715|ref|YP_004044642.1| - 0.026 15.0 0.0 0.037 14.5 0.0 1.3 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_45 PF14947.6 gi|313122715|ref|YP_004044642.1| - 0.04 13.9 0.0 0.058 13.4 0.0 1.3 1 0 0 1 1 1 0 Winged helix-turn-helix HTH_24 PF13412.6 gi|313122715|ref|YP_004044642.1| - 0.075 12.6 0.0 0.12 11.9 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding SHOCT PF09851.9 gi|313122715|ref|YP_004044642.1| - 0.09 12.5 0.9 0.49 10.2 0.4 2.3 2 0 0 2 2 2 0 Short C-terminal domain LexA_DNA_bind PF01726.16 gi|313122715|ref|YP_004044642.1| - 0.11 12.3 0.0 0.2 11.5 0.0 1.4 1 0 0 1 1 1 0 LexA DNA binding domain HTH_Crp_2 PF13545.6 gi|313122715|ref|YP_004044642.1| - 0.15 12.0 0.0 0.22 11.5 0.0 1.3 1 0 0 1 1 1 0 Crp-like helix-turn-helix domain Peripla_BP_2 PF01497.18 gi|313122717|ref|YP_004044644.1| - 3e-27 95.7 0.0 3.7e-27 95.4 0.0 1.1 1 0 0 1 1 1 1 Periplasmic binding protein TAT_signal PF10518.9 gi|313122717|ref|YP_004044644.1| - 0.004 16.9 0.7 0.0078 16.0 0.7 1.5 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Copper-bind PF00127.20 gi|313122718|ref|YP_004044645.1| - 4.6e-28 97.6 0.1 4.6e-16 59.1 0.1 3.0 2 2 0 2 2 2 2 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.6 gi|313122718|ref|YP_004044645.1| - 1.2e-10 41.4 0.0 1e-05 25.6 0.0 2.4 2 0 0 2 2 2 2 Cupredoxin-like domain TAT_signal PF10518.9 gi|313122718|ref|YP_004044645.1| - 0.31 11.0 0.9 0.49 10.3 0.1 1.8 2 0 0 2 2 2 0 TAT (twin-arginine translocation) pathway signal sequence Serpentine_r_xa PF03383.15 gi|313122720|ref|YP_004044647.1| - 0.088 12.8 2.0 0.21 11.6 0.2 1.9 1 1 1 2 2 2 0 Caenorhabditis serpentine receptor-like protein, class xa DUF2417 PF10329.9 gi|313122720|ref|YP_004044647.1| - 0.66 9.3 5.7 0.83 9.0 5.7 1.2 1 0 0 1 1 1 0 Region of unknown function (DUF2417) MS_channel PF00924.18 gi|313122721|ref|YP_004044648.1| - 7.2e-46 156.3 0.0 7.2e-46 156.3 0.0 1.5 2 0 0 2 2 2 1 Mechanosensitive ion channel TM_helix PF05552.12 gi|313122721|ref|YP_004044648.1| - 0.017 15.1 0.0 0.017 15.1 0.0 2.7 2 1 0 2 2 2 0 Conserved TM helix NeuB PF03102.14 gi|313122721|ref|YP_004044648.1| - 0.037 13.5 0.0 0.061 12.8 0.0 1.3 1 0 0 1 1 1 0 NeuB family DUF2062 PF09835.9 gi|313122721|ref|YP_004044648.1| - 2.6 7.9 8.9 1.7 8.5 6.7 1.9 2 1 0 2 2 2 0 Uncharacterized protein conserved in bacteria (DUF2062) ABC_export PF16962.5 gi|313122721|ref|YP_004044648.1| - 4.4 5.6 10.6 5.8 5.2 10.6 1.1 1 0 0 1 1 1 0 Putative ABC exporter PRA1 PF03208.19 gi|313122721|ref|YP_004044648.1| - 6.6 6.4 9.0 11 5.6 9.0 1.4 1 0 0 1 1 1 0 PRA1 family protein Bac_export_2 PF01312.19 gi|313122721|ref|YP_004044648.1| - 9.7 5.3 7.4 14 4.8 7.4 1.1 1 0 0 1 1 1 0 FlhB HrpN YscU SpaS Family OB_Dis3 PF17849.1 gi|313122722|ref|YP_004044649.1| - 0.00056 19.9 0.0 0.00076 19.4 0.0 1.2 1 0 0 1 1 1 1 Dis3-like cold-shock domain 2 (CSD2) TRAM_2 PF18693.1 gi|313122722|ref|YP_004044649.1| - 0.0015 18.6 0.2 1.8 8.8 0.0 2.1 2 0 0 2 2 2 2 TRAM domain Na_H_antiporter PF03553.14 gi|313122723|ref|YP_004044650.1| - 1.5e-33 116.4 40.8 2.5e-22 79.5 20.7 2.1 1 1 1 2 2 2 2 Na+/H+ antiporter family IclR PF01614.18 gi|313122724|ref|YP_004044651.1| - 3.4e-28 98.0 0.2 9.5e-28 96.6 0.0 1.7 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.10 gi|313122724|ref|YP_004044651.1| - 5.7e-08 32.4 0.0 2.1e-07 30.6 0.0 1.9 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_20 PF12840.7 gi|313122724|ref|YP_004044651.1| - 9.8e-05 22.3 0.1 0.00018 21.5 0.1 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.6 gi|313122724|ref|YP_004044651.1| - 0.00058 19.4 0.0 0.0013 18.2 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.20 gi|313122724|ref|YP_004044651.1| - 0.0016 18.3 0.0 0.0029 17.4 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family DUF1803 PF08820.10 gi|313122724|ref|YP_004044651.1| - 0.002 18.1 0.1 0.0041 17.1 0.1 1.6 1 0 0 1 1 1 1 Domain of unknown function (DUF1803) Sigma70_r4_2 PF08281.12 gi|313122724|ref|YP_004044651.1| - 0.0034 17.0 0.0 0.008 15.8 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 TrmB PF01978.19 gi|313122724|ref|YP_004044651.1| - 0.0044 16.9 0.0 0.0087 15.9 0.0 1.4 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR_2 PF12802.7 gi|313122724|ref|YP_004044651.1| - 0.0083 16.0 0.0 0.018 14.9 0.0 1.5 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.6 gi|313122724|ref|YP_004044651.1| - 0.014 15.9 0.2 0.029 14.8 0.2 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain MarR PF01047.22 gi|313122724|ref|YP_004044651.1| - 0.014 15.3 0.2 0.03 14.3 0.2 1.4 1 0 0 1 1 1 0 MarR family HTH_11 PF08279.12 gi|313122724|ref|YP_004044651.1| - 0.023 14.6 0.1 0.12 12.3 0.1 2.1 2 0 0 2 2 2 0 HTH domain CodY PF06018.14 gi|313122724|ref|YP_004044651.1| - 0.027 14.0 0.0 0.049 13.1 0.0 1.4 1 0 0 1 1 1 0 CodY GAF-like domain HTH_40 PF14493.6 gi|313122724|ref|YP_004044651.1| - 0.074 13.5 0.1 0.16 12.4 0.1 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain LIN52 PF10044.9 gi|313122724|ref|YP_004044651.1| - 0.091 13.5 0.4 16 6.3 0.1 2.3 2 0 0 2 2 2 0 Retinal tissue protein GCV_T PF01571.21 gi|313122725|ref|YP_004044652.1| - 4.3e-81 272.1 0.0 5.6e-81 271.7 0.0 1.1 1 0 0 1 1 1 1 Aminomethyltransferase folate-binding domain GCV_T_C PF08669.11 gi|313122725|ref|YP_004044652.1| - 3.4e-23 81.4 0.0 6.2e-23 80.5 0.0 1.4 1 0 0 1 1 1 1 Glycine cleavage T-protein C-terminal barrel domain TrmE_N PF10396.9 gi|313122725|ref|YP_004044652.1| - 0.00021 21.6 0.0 0.066 13.6 0.0 2.5 2 0 0 2 2 2 2 GTP-binding protein TrmE N-terminus GCV_H PF01597.19 gi|313122726|ref|YP_004044653.1| - 2.7e-39 133.9 0.0 2.9e-39 133.7 0.0 1.0 1 0 0 1 1 1 1 Glycine cleavage H-protein Biotin_lipoyl PF00364.22 gi|313122726|ref|YP_004044653.1| - 0.0086 15.9 0.1 0.013 15.3 0.1 1.3 1 0 0 1 1 1 1 Biotin-requiring enzyme RnfC_N PF13375.6 gi|313122726|ref|YP_004044653.1| - 0.072 13.1 0.0 0.1 12.6 0.0 1.2 1 0 0 1 1 1 0 RnfC Barrel sandwich hybrid domain GDC-P PF02347.16 gi|313122727|ref|YP_004044654.1| - 1.5e-103 346.9 0.0 1.8e-103 346.7 0.0 1.0 1 0 0 1 1 1 1 Glycine cleavage system P-protein Cys_Met_Meta_PP PF01053.20 gi|313122727|ref|YP_004044654.1| - 0.025 13.1 0.0 0.037 12.6 0.0 1.2 1 0 0 1 1 1 0 Cys/Met metabolism PLP-dependent enzyme UPF0180 PF03698.13 gi|313122727|ref|YP_004044654.1| - 0.043 14.0 0.3 0.089 13.0 0.3 1.5 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0180) Aminotran_5 PF00266.19 gi|313122728|ref|YP_004044655.1| - 1.3e-09 37.5 0.0 1.9e-09 36.9 0.0 1.2 1 0 0 1 1 1 1 Aminotransferase class-V GDC-P PF02347.16 gi|313122728|ref|YP_004044655.1| - 6.4e-07 28.6 0.0 8.3e-06 24.9 0.0 2.1 2 0 0 2 2 2 1 Glycine cleavage system P-protein Beta_elim_lyase PF01212.21 gi|313122728|ref|YP_004044655.1| - 0.00093 18.6 0.0 0.0015 17.9 0.0 1.3 1 0 0 1 1 1 1 Beta-eliminating lyase IFT46_B_C PF12317.8 gi|313122728|ref|YP_004044655.1| - 0.1 12.3 0.0 0.18 11.5 0.0 1.3 1 0 0 1 1 1 0 Intraflagellar transport complex B protein 46 C terminal SHMT PF00464.19 gi|313122729|ref|YP_004044656.1| - 4.5e-159 529.3 0.4 5.5e-159 529.1 0.4 1.0 1 0 0 1 1 1 1 Serine hydroxymethyltransferase Aminotran_1_2 PF00155.21 gi|313122729|ref|YP_004044656.1| - 2.3e-08 33.6 0.0 5.8e-08 32.3 0.0 1.6 1 1 0 1 1 1 1 Aminotransferase class I and II Beta_elim_lyase PF01212.21 gi|313122729|ref|YP_004044656.1| - 1.3e-05 24.6 0.0 0.12 11.6 0.0 2.1 2 0 0 2 2 2 2 Beta-eliminating lyase DegT_DnrJ_EryC1 PF01041.17 gi|313122729|ref|YP_004044656.1| - 6.5e-05 22.4 0.2 9.4e-05 21.9 0.2 1.2 1 0 0 1 1 1 1 DegT/DnrJ/EryC1/StrS aminotransferase family PALP PF00291.25 gi|313122730|ref|YP_004044657.1| - 1.1e-85 287.7 4.9 1.3e-85 287.4 4.9 1.1 1 0 0 1 1 1 1 Pyridoxal-phosphate dependent enzyme ACT PF01842.25 gi|313122730|ref|YP_004044657.1| - 1.4e-08 34.3 0.2 4.3e-08 32.8 0.2 1.8 1 0 0 1 1 1 1 ACT domain ACT_4 PF13291.6 gi|313122730|ref|YP_004044657.1| - 1.5e-05 25.5 0.0 7.2e-05 23.3 0.0 2.2 3 0 0 3 3 3 1 ACT domain Beta-lactamase PF00144.24 gi|313122731|ref|YP_004044658.1| - 4.1e-61 207.1 0.0 6.1e-61 206.5 0.0 1.1 1 0 0 1 1 1 1 Beta-lactamase Pab87_oct PF13969.6 gi|313122731|ref|YP_004044658.1| - 2.7e-32 110.7 0.0 5.6e-32 109.7 0.0 1.6 1 0 0 1 1 1 1 Pab87 octamerisation domain Pyr_redox_2 PF07992.14 gi|313122732|ref|YP_004044659.1| - 9.7e-68 228.5 1.1 9.7e-68 228.5 1.1 1.9 2 0 0 2 2 2 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.22 gi|313122732|ref|YP_004044659.1| - 1.9e-35 121.4 1.0 1.9e-35 121.4 1.0 1.8 2 0 0 2 2 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.27 gi|313122732|ref|YP_004044659.1| - 1.5e-21 76.8 7.3 7.8e-19 68.0 0.2 3.2 3 0 0 3 3 3 2 Pyridine nucleotide-disulphide oxidoreductase FAD_binding_2 PF00890.24 gi|313122732|ref|YP_004044659.1| - 1.1e-10 41.2 5.2 1.9e-08 33.8 1.0 3.3 3 0 0 3 3 3 1 FAD binding domain GIDA PF01134.22 gi|313122732|ref|YP_004044659.1| - 1.5e-09 37.4 3.6 2.4e-07 30.2 1.3 2.7 3 1 0 3 3 3 2 Glucose inhibited division protein A Pyr_redox_3 PF13738.6 gi|313122732|ref|YP_004044659.1| - 2.2e-09 37.0 1.0 0.00046 19.5 0.0 2.3 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase NAD_binding_8 PF13450.6 gi|313122732|ref|YP_004044659.1| - 1.8e-08 34.5 2.3 5e-05 23.4 0.6 2.8 2 0 0 2 2 2 2 NAD(P)-binding Rossmann-like domain FAD_oxidored PF12831.7 gi|313122732|ref|YP_004044659.1| - 3.3e-08 33.3 0.2 6e-08 32.5 0.2 1.5 1 0 0 1 1 1 1 FAD dependent oxidoreductase FAD_binding_3 PF01494.19 gi|313122732|ref|YP_004044659.1| - 9.2e-08 31.7 4.4 5.8e-05 22.5 0.3 2.9 2 1 0 2 2 2 2 FAD binding domain HI0933_like PF03486.14 gi|313122732|ref|YP_004044659.1| - 1.2e-07 30.8 3.3 2.6e-05 23.1 0.6 3.1 3 0 0 3 3 3 1 HI0933-like protein DAO PF01266.24 gi|313122732|ref|YP_004044659.1| - 1.3e-07 31.5 7.9 0.002 17.8 1.1 4.1 4 0 0 4 4 4 3 FAD dependent oxidoreductase UDPG_MGDP_dh_N PF03721.14 gi|313122732|ref|YP_004044659.1| - 3.5e-06 26.7 3.1 0.00043 19.9 0.0 3.0 3 0 0 3 3 3 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3HCDH_N PF02737.18 gi|313122732|ref|YP_004044659.1| - 8.7e-06 25.7 6.6 0.00089 19.2 0.0 3.3 3 1 0 3 3 3 2 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Thi4 PF01946.17 gi|313122732|ref|YP_004044659.1| - 0.00021 20.6 4.5 0.001 18.4 0.1 2.9 3 0 0 3 3 3 1 Thi4 family NAD_binding_7 PF13241.6 gi|313122732|ref|YP_004044659.1| - 0.00098 19.5 0.2 1.6 9.2 0.0 2.8 2 0 0 2 2 2 2 Putative NAD(P)-binding Trp_halogenase PF04820.14 gi|313122732|ref|YP_004044659.1| - 0.0048 15.8 0.1 0.0048 15.8 0.1 1.6 2 0 0 2 2 2 1 Tryptophan halogenase AlaDh_PNT_C PF01262.21 gi|313122732|ref|YP_004044659.1| - 0.0056 16.0 8.6 0.54 9.5 0.1 3.2 3 0 0 3 3 3 2 Alanine dehydrogenase/PNT, C-terminal domain Lycopene_cycl PF05834.12 gi|313122732|ref|YP_004044659.1| - 0.0058 15.7 2.9 0.063 12.3 0.9 2.5 2 1 0 2 2 2 1 Lycopene cyclase protein XdhC_C PF13478.6 gi|313122732|ref|YP_004044659.1| - 0.017 15.7 0.7 0.77 10.3 0.0 2.7 3 0 0 3 3 2 0 XdhC Rossmann domain TrkA_N PF02254.18 gi|313122732|ref|YP_004044659.1| - 0.046 14.0 3.8 0.18 12.1 0.1 2.9 3 0 0 3 3 3 0 TrkA-N domain 2-Hacid_dh_C PF02826.19 gi|313122732|ref|YP_004044659.1| - 0.081 12.3 0.1 1.2 8.4 0.0 2.3 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_9 PF13454.6 gi|313122732|ref|YP_004044659.1| - 0.13 12.2 2.0 0.76 9.7 0.2 2.8 2 1 1 3 3 3 0 FAD-NAD(P)-binding HTH_26 PF13443.6 gi|313122732|ref|YP_004044659.1| - 0.19 12.2 0.0 0.4 11.1 0.0 1.5 1 0 0 1 1 1 0 Cro/C1-type HTH DNA-binding domain Radical_SAM PF04055.21 gi|313122733|ref|YP_004044660.1| - 5.6e-15 56.1 0.0 1.3e-14 54.9 0.0 1.6 2 0 0 2 2 2 1 Radical SAM superfamily LIAS_N PF16881.5 gi|313122733|ref|YP_004044660.1| - 3.9e-11 43.3 0.0 2.5e-10 40.7 0.0 2.1 2 1 0 2 2 2 1 N-terminal domain of lipoyl synthase of Radical_SAM family Ribonuc_L-PSP PF01042.21 gi|313122734|ref|YP_004044661.1| - 3.1e-39 133.7 0.1 3.4e-39 133.6 0.1 1.0 1 0 0 1 1 1 1 Endoribonuclease L-PSP YjgF_endoribonc PF14588.6 gi|313122734|ref|YP_004044661.1| - 0.0017 18.5 0.0 0.0021 18.2 0.0 1.2 1 0 0 1 1 1 1 YjgF/chorismate_mutase-like, putative endoribonuclease DUF5130 PF17174.4 gi|313122734|ref|YP_004044661.1| - 0.017 15.4 0.1 0.022 15.0 0.0 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF5130) NIR_SIR PF01077.22 gi|313122735|ref|YP_004044662.1| - 1.8e-46 157.6 0.0 7.3e-35 119.8 0.0 2.3 2 0 0 2 2 2 2 Nitrite and sulphite reductase 4Fe-4S domain NIR_SIR_ferr PF03460.17 gi|313122735|ref|YP_004044662.1| - 3.3e-30 103.7 0.2 1.2e-13 50.6 0.0 3.5 2 1 0 2 2 2 2 Nitrite/Sulfite reductase ferredoxin-like half domain DGC PF08859.11 gi|313122735|ref|YP_004044662.1| - 0.0041 17.2 0.0 1.3 9.2 0.0 3.0 3 0 0 3 3 3 2 DGC domain FrhB_FdhB_C PF04432.13 gi|313122736|ref|YP_004044663.1| - 2.7e-28 98.7 0.0 5.3e-28 97.8 0.0 1.5 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus FrhB_FdhB_N PF04422.13 gi|313122736|ref|YP_004044663.1| - 8.3e-22 77.1 0.0 1.5e-21 76.3 0.0 1.4 1 0 0 1 1 1 1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term Fer4_21 PF14697.6 gi|313122736|ref|YP_004044663.1| - 1.7e-09 37.6 4.4 1.7e-09 37.6 4.4 1.9 2 0 0 2 2 1 1 4Fe-4S dicluster domain Fer4 PF00037.27 gi|313122736|ref|YP_004044663.1| - 1.1e-08 34.6 17.2 2.1e-06 27.3 3.4 3.2 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.6 gi|313122736|ref|YP_004044663.1| - 3.1e-08 33.6 5.5 3.1e-08 33.6 5.5 2.6 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_9 PF13187.6 gi|313122736|ref|YP_004044663.1| - 3.1e-07 30.4 6.2 3.1e-07 30.4 6.2 2.6 3 0 0 3 3 2 1 4Fe-4S dicluster domain Fer4_16 PF13484.6 gi|313122736|ref|YP_004044663.1| - 2.3e-06 28.5 10.8 0.023 15.6 0.9 4.2 4 0 0 4 4 4 2 4Fe-4S double cluster binding domain Fer4_7 PF12838.7 gi|313122736|ref|YP_004044663.1| - 4.3e-05 24.0 12.5 0.0018 18.9 1.7 3.1 3 1 1 4 4 4 3 4Fe-4S dicluster domain Fer4_6 PF12837.7 gi|313122736|ref|YP_004044663.1| - 4.3e-05 23.4 3.4 4.3e-05 23.4 3.4 3.2 3 0 0 3 3 3 1 4Fe-4S binding domain Fer4_2 PF12797.7 gi|313122736|ref|YP_004044663.1| - 0.00016 21.6 3.3 0.00016 21.6 3.3 3.7 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_18 PF13746.6 gi|313122736|ref|YP_004044663.1| - 0.00071 19.7 1.1 0.002 18.3 1.1 1.7 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_4 PF12800.7 gi|313122736|ref|YP_004044663.1| - 0.0022 18.4 4.6 0.0022 18.4 4.6 3.6 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_17 PF13534.6 gi|313122736|ref|YP_004044663.1| - 0.0022 18.5 1.6 0.018 15.5 0.2 3.3 4 0 0 4 4 3 2 4Fe-4S dicluster domain Fer4_13 PF13370.6 gi|313122736|ref|YP_004044663.1| - 0.032 14.8 13.2 0.36 11.4 3.8 2.8 2 0 0 2 2 2 0 4Fe-4S single cluster domain of Ferredoxin I TonB_2 PF13103.6 gi|313122736|ref|YP_004044663.1| - 0.039 14.2 0.0 0.21 11.8 0.0 2.1 2 0 0 2 2 2 0 TonB C terminal Fer4_15 PF13459.6 gi|313122736|ref|YP_004044663.1| - 0.056 14.2 10.7 0.099 13.4 0.9 3.2 2 1 1 3 3 3 0 4Fe-4S single cluster domain Fer4_8 PF13183.6 gi|313122736|ref|YP_004044663.1| - 0.28 11.6 15.5 0.63 10.5 4.0 3.1 2 1 2 4 4 4 0 4Fe-4S dicluster domain Fer4_22 PF17179.4 gi|313122736|ref|YP_004044663.1| - 1.7 9.5 10.0 8 7.4 1.7 2.8 2 0 0 2 2 2 0 4Fe-4S dicluster domain YbjQ_1 PF01906.17 gi|313122737|ref|YP_004044664.1| - 1.1e-32 112.7 2.9 1.3e-32 112.6 2.9 1.0 1 0 0 1 1 1 1 Putative heavy-metal-binding PKD PF00801.20 gi|313122738|ref|YP_004044665.1| - 8.3e-11 41.6 6.9 2.3e-10 40.2 6.9 1.8 1 0 0 1 1 1 1 PKD domain CBM_5_12 PF02839.14 gi|313122738|ref|YP_004044665.1| - 0.0053 17.3 5.0 0.027 15.0 5.0 2.4 1 0 0 1 1 1 1 Carbohydrate binding domain DUF5011 PF16403.5 gi|313122738|ref|YP_004044665.1| - 0.017 15.2 4.6 0.041 14.0 4.6 1.7 1 0 0 1 1 1 0 Domain of unknown function (DUF5011) PKD_3 PF16820.5 gi|313122738|ref|YP_004044665.1| - 0.025 14.3 1.9 0.025 14.3 1.9 2.1 2 0 0 2 2 2 0 PKD-like domain GAT PF03127.14 gi|313122738|ref|YP_004044665.1| - 0.037 14.3 0.2 0.07 13.5 0.2 1.4 1 0 0 1 1 1 0 GAT domain Ig_3 PF13927.6 gi|313122738|ref|YP_004044665.1| - 0.09 13.4 2.0 0.32 11.6 0.8 2.4 2 0 0 2 2 2 0 Immunoglobulin domain FctA PF12892.7 gi|313122738|ref|YP_004044665.1| - 0.099 13.5 5.5 0.27 12.1 5.5 1.7 1 0 0 1 1 1 0 Spy0128-like isopeptide containing domain Big_3 PF07523.12 gi|313122738|ref|YP_004044665.1| - 2.3 8.6 10.1 1.5 9.1 5.8 2.7 2 1 0 2 2 2 0 Bacterial Ig-like domain (group 3) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halogeometricum_borinquense_DSM_11551_uid54919/NC_014736.faa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halogeometricum_borinquense_DSM_11551_uid54919/NC_014736.PFam32-A --tblout /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halogeometricum_borinquense_DSM_11551_uid54919/NC_014736.PFam32-A.tblout --cpu 20 /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/genomes/Archaea/Euryarchaeota/Halogeometricum_borinquense_DSM_11551_uid54919/NC_014736.faa # Current dir: /oak/stanford/groups/akundaje/marinovg/genomes # Date: Mon Mar 25 12:33:23 2019 # [ok]