# --- full sequence ---- --- best 1 domain ---- --- domain number estimation ---- # target name accession query name accession E-value score bias E-value score bias exp reg clu ov env dom rep inc description of target #------------------- ---------- -------------------- ---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- --- --- --- --------------------- ABC_tran PF00005.22 gi|313117185|ref|YP_004044168.1| - 1.8e-25 89.8 0.0 2.8e-25 89.1 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|313117185|ref|YP_004044168.1| - 2.2e-14 54.0 0.0 2.3e-08 34.3 0.0 2.2 2 0 0 2 2 2 2 AAA domain AAA_10 PF12846.2 gi|313117185|ref|YP_004044168.1| - 3e-05 23.6 0.2 0.56 9.5 0.0 3.0 3 0 0 3 3 3 2 AAA-like domain AAA_29 PF13555.1 gi|313117185|ref|YP_004044168.1| - 4.3e-05 22.9 0.1 9.2e-05 21.8 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|313117185|ref|YP_004044168.1| - 0.00041 19.6 0.0 0.4 9.8 0.0 2.3 2 0 0 2 2 2 2 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|313117185|ref|YP_004044168.1| - 0.00052 20.4 0.0 0.00066 20.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain DUF4162 PF13732.1 gi|313117185|ref|YP_004044168.1| - 0.0023 18.3 0.0 0.004 17.6 0.0 1.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) ArgK PF03308.11 gi|313117185|ref|YP_004044168.1| - 0.0052 15.5 0.0 0.0084 14.9 0.0 1.2 1 0 0 1 1 1 1 ArgK protein AAA_16 PF13191.1 gi|313117185|ref|YP_004044168.1| - 0.03 14.3 0.0 0.053 13.5 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain DUF258 PF03193.11 gi|313117185|ref|YP_004044168.1| - 0.051 12.7 0.0 0.076 12.2 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 SbcCD_C PF13558.1 gi|313117185|ref|YP_004044168.1| - 0.12 12.3 0.0 0.27 11.1 0.0 1.7 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit SicP-binding PF09119.5 gi|313117185|ref|YP_004044168.1| - 0.15 11.8 0.0 0.34 10.6 0.0 1.6 1 0 0 1 1 1 0 SicP binding Mg_chelatase PF01078.16 gi|313117185|ref|YP_004044168.1| - 0.15 11.2 0.0 3.6 6.6 0.0 2.2 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_15 PF13175.1 gi|313117185|ref|YP_004044168.1| - 0.19 10.7 0.0 5.5 5.9 0.0 2.1 2 0 0 2 2 2 0 AAA ATPase domain ABC2_membrane_2 PF12679.2 gi|313117186|ref|YP_004044169.1| - 5.3e-20 71.4 8.7 6.4e-20 71.1 6.1 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|313117186|ref|YP_004044169.1| - 1.8e-11 43.6 12.6 2.3e-11 43.2 8.6 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|313117186|ref|YP_004044169.1| - 0.00043 19.6 1.4 0.00073 18.8 0.2 1.7 1 1 0 1 1 1 1 ABC-2 family transporter protein Tom5 PF10642.4 gi|313117186|ref|YP_004044169.1| - 0.083 12.5 0.6 0.083 12.5 0.4 1.8 2 0 0 2 2 2 0 Mitochondrial import receptor subunit or translocase DDE_Tnp_IS240 PF13610.1 gi|313117188|ref|YP_004044171.1| - 1.4e-11 44.5 0.0 1.7e-11 44.2 0.0 1.2 1 0 0 1 1 1 1 DDE domain ALMT PF11744.3 gi|313117189|ref|YP_004044172.1| - 0.058 12.0 1.3 0.067 11.8 0.9 1.1 1 0 0 1 1 1 0 Aluminium activated malate transporter MgtC PF02308.11 gi|313117189|ref|YP_004044172.1| - 0.093 12.5 10.2 0.021 14.6 5.1 1.4 2 0 0 2 2 2 0 MgtC family Wzy_C PF04932.10 gi|313117189|ref|YP_004044172.1| - 0.38 10.5 4.4 0.62 9.8 3.1 1.4 1 1 0 1 1 1 0 O-Antigen ligase DUF2207 PF09972.4 gi|313117189|ref|YP_004044172.1| - 1.7 7.1 3.6 1.8 7.0 2.5 1.2 1 0 0 1 1 1 0 Predicted membrane protein (DUF2207) TLE_N PF03920.10 gi|313117191|ref|YP_004044174.1| - 0.16 11.8 0.7 0.25 11.1 0.5 1.3 1 0 0 1 1 1 0 Groucho/TLE N-terminal Q-rich domain LPAM_1 PF08139.7 gi|313117192|ref|YP_004044175.1| - 1.1 9.5 3.0 2.1 8.7 2.1 1.4 1 0 0 1 1 1 0 Prokaryotic membrane lipoprotein lipid attachment site Apolipoprotein PF01442.13 gi|313117193|ref|YP_004044176.1| - 0.096 12.1 0.0 0.13 11.7 0.0 1.2 1 0 0 1 1 1 0 Apolipoprotein A1/A4/E domain TAT_signal PF10518.4 gi|313117193|ref|YP_004044176.1| - 0.48 10.5 2.0 0.91 9.6 1.4 1.5 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Sulfate_transp PF00916.15 gi|313117194|ref|YP_004044177.1| - 0.08 11.9 0.6 0.11 11.5 0.4 1.1 1 0 0 1 1 1 0 Sulfate transporter family Usp PF00582.21 gi|313117195|ref|YP_004044178.1| - 9e-31 106.9 0.1 1e-30 106.7 0.0 1.0 1 0 0 1 1 1 1 Universal stress protein family AP_endonuc_2 PF01261.19 gi|313117195|ref|YP_004044178.1| - 0.047 12.9 0.0 0.063 12.5 0.0 1.2 1 0 0 1 1 1 0 Xylose isomerase-like TIM barrel DNA_photolyase PF00875.13 gi|313117195|ref|YP_004044178.1| - 0.07 12.8 0.0 0.11 12.2 0.0 1.2 1 0 0 1 1 1 0 DNA photolyase ABC2_membrane_2 PF12679.2 gi|313117197|ref|YP_004044180.1| - 0.057 12.2 0.1 0.058 12.2 0.0 1.0 1 0 0 1 1 1 0 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|313117198|ref|YP_004044181.1| - 7.2e-08 31.6 10.6 7.5e-08 31.5 7.0 1.2 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|313117198|ref|YP_004044181.1| - 4.5e-05 22.7 12.9 8e-05 21.9 8.7 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|313117198|ref|YP_004044181.1| - 0.04 12.9 11.6 0.062 12.3 8.0 1.4 1 1 0 1 1 1 0 ABC-2 family transporter protein Glycos_transf_1 PF00534.15 gi|313117199|ref|YP_004044182.1| - 1.3e-18 67.0 0.0 8.9e-18 64.2 0.0 2.3 3 0 0 3 3 3 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|313117199|ref|YP_004044182.1| - 5.8e-14 52.3 0.0 4.2e-13 49.5 0.0 2.2 2 1 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|313117199|ref|YP_004044182.1| - 2.7e-09 37.1 0.0 5.3e-09 36.2 0.0 1.5 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|313117199|ref|YP_004044182.1| - 3.3e-08 33.8 0.0 6.9e-08 32.7 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|313117199|ref|YP_004044182.1| - 3.7e-06 26.7 0.0 6.2e-06 26.0 0.0 1.4 1 0 0 1 1 1 1 Glycosyltransferase Family 4 DUF3325 PF11804.3 gi|313117202|ref|YP_004044185.1| - 0.042 13.7 6.2 0.14 12.1 4.3 1.7 1 1 0 1 1 1 0 Protein of unknown function (DUF3325) AzlD PF05437.7 gi|313117202|ref|YP_004044185.1| - 0.18 11.7 3.2 0.63 10.0 0.2 2.2 2 0 0 2 2 2 0 Branched-chain amino acid transport protein (AzlD) DUF1469 PF07332.6 gi|313117202|ref|YP_004044185.1| - 0.5 10.0 3.1 1 9.0 2.2 1.5 1 1 0 1 1 1 0 Protein of unknown function (DUF1469) DUF1206 PF06724.6 gi|313117202|ref|YP_004044185.1| - 7.2 6.4 7.0 1.2 8.8 0.7 2.1 2 0 0 2 2 2 0 Domain of Unknown Function (DUF1206) ABC_tran PF00005.22 gi|313117203|ref|YP_004044186.1| - 4.9e-28 98.1 0.0 8.1e-28 97.4 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|313117203|ref|YP_004044186.1| - 7.7e-13 49.0 0.0 1.5e-07 31.6 0.0 2.3 1 1 0 2 2 2 2 AAA domain AAA_23 PF13476.1 gi|313117203|ref|YP_004044186.1| - 1.2e-05 25.7 0.0 2.5e-05 24.7 0.0 1.6 2 1 0 2 2 2 1 AAA domain AAA_29 PF13555.1 gi|313117203|ref|YP_004044186.1| - 5e-05 22.7 0.0 9.1e-05 21.9 0.0 1.3 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|313117203|ref|YP_004044186.1| - 9.1e-05 21.7 0.0 0.0038 16.4 0.0 2.1 2 0 0 2 2 2 1 RecF/RecN/SMC N terminal domain AAA_33 PF13671.1 gi|313117203|ref|YP_004044186.1| - 0.00094 19.0 0.0 0.0041 16.9 0.0 1.9 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|313117203|ref|YP_004044186.1| - 0.0035 16.4 0.0 1.2 8.0 0.0 2.1 2 0 0 2 2 2 2 AAA ATPase domain DUF258 PF03193.11 gi|313117203|ref|YP_004044186.1| - 0.02 14.0 0.1 0.045 12.9 0.0 1.6 1 1 0 1 1 1 0 Protein of unknown function, DUF258 MMR_HSR1 PF01926.18 gi|313117203|ref|YP_004044186.1| - 0.033 14.1 0.0 0.06 13.3 0.0 1.7 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_PrkA PF08298.6 gi|313117203|ref|YP_004044186.1| - 0.043 12.4 0.0 0.081 11.5 0.0 1.4 1 0 0 1 1 1 0 PrkA AAA domain AAA_16 PF13191.1 gi|313117203|ref|YP_004044186.1| - 0.062 13.2 0.0 0.11 12.4 0.0 1.5 1 1 0 1 1 1 0 AAA ATPase domain AAA_10 PF12846.2 gi|313117203|ref|YP_004044186.1| - 0.15 11.4 0.4 0.58 9.5 0.1 1.8 1 1 1 2 2 2 0 AAA-like domain ABC2_membrane_2 PF12679.2 gi|313117204|ref|YP_004044187.1| - 3.1e-08 32.8 3.7 3.1e-08 32.8 2.6 3.0 2 1 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|313117204|ref|YP_004044187.1| - 3.3e-05 23.1 11.9 3.3e-05 23.1 8.2 2.5 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|313117204|ref|YP_004044187.1| - 4.8e-05 22.7 5.0 4.8e-05 22.7 3.5 3.1 3 1 0 3 3 3 1 ABC-2 family transporter protein OspE PF02471.12 gi|313117205|ref|YP_004044188.1| - 0.1 12.4 0.1 0.11 12.3 0.1 1.2 1 0 0 1 1 1 0 Borrelia outer surface protein E Bac_luciferase PF00296.15 gi|313117206|ref|YP_004044189.1| - 5.5e-36 124.2 0.1 1.7e-35 122.6 0.1 1.8 1 1 0 1 1 1 1 Luciferase-like monooxygenase Hexapep PF00132.19 gi|313117207|ref|YP_004044190.1| - 5.8e-18 63.5 9.4 1.2e-07 30.8 0.6 3.6 2 1 1 3 3 3 3 Bacterial transferase hexapeptide (six repeats) Hexapep_2 PF14602.1 gi|313117207|ref|YP_004044190.1| - 5.9e-07 28.9 9.2 1.8e-05 24.1 0.7 3.9 1 1 3 4 4 4 3 Hexapeptide repeat of succinyl-transferase Fucokinase PF07959.7 gi|313117207|ref|YP_004044190.1| - 0.16 10.5 0.6 4.1 5.8 0.2 2.0 1 1 1 2 2 2 0 L-fucokinase Phasin_2 PF09361.5 gi|313117209|ref|YP_004044192.1| - 0.0008 19.3 1.7 1.4 8.9 0.0 2.8 1 1 0 2 2 2 2 Phasin protein PMC2NT PF08066.7 gi|313117209|ref|YP_004044192.1| - 0.079 13.2 4.6 0.56 10.5 3.1 2.2 1 1 0 1 1 1 0 PMC2NT (NUC016) domain Phasin PF05597.6 gi|313117209|ref|YP_004044192.1| - 0.1 12.3 0.7 1.2 8.8 0.0 2.1 1 1 1 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) GTPase_Cys_C PF12631.2 gi|313117209|ref|YP_004044192.1| - 0.17 12.3 1.4 0.3 11.5 0.1 2.2 2 1 0 2 2 2 0 Catalytic cysteine-containing C-terminus of GTPase, MnmE DUF1993 PF09351.5 gi|313117209|ref|YP_004044192.1| - 0.2 11.5 1.8 0.25 11.2 1.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF1993) DASH_Dam1 PF08653.5 gi|313117209|ref|YP_004044192.1| - 0.22 11.3 2.0 6.6 6.5 0.0 2.9 2 1 0 2 2 2 0 DASH complex subunit Dam1 PHA_synth_III_E PF09712.5 gi|313117210|ref|YP_004044193.1| - 4.2e-10 39.5 0.2 2.4e-09 37.0 0.1 1.9 1 1 1 2 2 2 2 Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E) Phasin PF05597.6 gi|313117210|ref|YP_004044193.1| - 0.012 15.3 0.3 0.035 13.8 0.0 1.9 1 1 1 2 2 2 0 Poly(hydroxyalcanoate) granule associated protein (phasin) Nsp1_C PF05064.8 gi|313117210|ref|YP_004044193.1| - 0.046 13.3 0.5 3.8 7.1 0.1 2.3 2 0 0 2 2 2 0 Nsp1-like C-terminal region FliD_C PF07195.7 gi|313117210|ref|YP_004044193.1| - 0.05 12.8 0.0 0.22 10.8 0.0 1.9 1 1 0 1 1 1 0 Flagellar hook-associated protein 2 C-terminus DUF3150 PF11348.3 gi|313117210|ref|YP_004044193.1| - 0.11 11.5 0.2 0.15 11.1 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF3150) Sipho_Gp157 PF05565.6 gi|313117210|ref|YP_004044193.1| - 0.12 11.9 0.6 11 5.5 0.1 2.2 2 0 0 2 2 2 0 Siphovirus Gp157 DUF4083 PF13314.1 gi|313117210|ref|YP_004044193.1| - 0.22 11.3 0.6 0.36 10.6 0.4 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4083) Abhydrolase_1 PF00561.15 gi|313117211|ref|YP_004044194.1| - 2.6e-19 69.6 0.0 4.3e-19 68.9 0.0 1.3 1 0 0 1 1 1 1 alpha/beta hydrolase fold PhaC_N PF07167.8 gi|313117211|ref|YP_004044194.1| - 2.7e-13 49.6 0.0 4.8e-13 48.8 0.0 1.4 1 0 0 1 1 1 1 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus Abhydrolase_6 PF12697.2 gi|313117211|ref|YP_004044194.1| - 5.6e-11 42.7 0.0 1.9e-10 41.0 0.0 1.8 2 0 0 2 2 2 1 Alpha/beta hydrolase family DUF3141 PF11339.3 gi|313117211|ref|YP_004044194.1| - 6.8e-10 37.9 0.0 3.6e-09 35.5 0.1 1.8 2 0 0 2 2 2 1 Protein of unknown function (DUF3141) Abhydrolase_5 PF12695.2 gi|313117211|ref|YP_004044194.1| - 1.6e-08 34.4 0.0 3.5e-07 30.0 0.0 2.3 1 1 0 1 1 1 1 Alpha/beta hydrolase family HHH_5 PF14520.1 gi|313117211|ref|YP_004044194.1| - 3.5e-07 30.2 0.1 9e-07 28.9 0.1 1.7 1 0 0 1 1 1 1 Helix-hairpin-helix domain DLH PF01738.13 gi|313117211|ref|YP_004044194.1| - 3.4e-06 26.5 0.0 0.003 16.8 0.0 2.5 2 0 0 2 2 2 2 Dienelactone hydrolase family DNA_pol_lambd_f PF10391.4 gi|313117211|ref|YP_004044194.1| - 2.7e-05 23.5 0.0 7.6e-05 22.1 0.0 1.8 1 0 0 1 1 1 1 Fingers domain of DNA polymerase lambda FSH1 PF03959.8 gi|313117211|ref|YP_004044194.1| - 3.4e-05 23.4 0.0 0.0083 15.5 0.0 2.3 2 0 0 2 2 2 1 Serine hydrolase (FSH1) DUF4332 PF14229.1 gi|313117211|ref|YP_004044194.1| - 0.00041 20.3 0.2 0.0054 16.6 0.1 2.2 1 1 0 1 1 1 1 Domain of unknown function (DUF4332) PHB_depo_C PF06850.6 gi|313117211|ref|YP_004044194.1| - 0.0015 17.8 0.0 0.0044 16.2 0.0 1.8 2 0 0 2 2 2 1 PHB de-polymerase C-terminus Cdd1 PF11731.3 gi|313117211|ref|YP_004044194.1| - 0.012 15.5 0.0 0.025 14.5 0.0 1.5 1 0 0 1 1 1 0 Pathogenicity locus HTH_Tnp_1 PF01527.15 gi|313117211|ref|YP_004044194.1| - 0.032 14.1 0.0 0.11 12.4 0.0 1.9 1 0 0 1 1 1 0 Transposase DUF2048 PF09752.4 gi|313117211|ref|YP_004044194.1| - 0.051 12.4 0.3 0.19 10.5 0.0 2.0 3 0 0 3 3 3 0 Uncharacterized conserved protein (DUF2048) PGAP1 PF07819.8 gi|313117211|ref|YP_004044194.1| - 0.053 13.0 0.0 0.082 12.4 0.0 1.3 1 0 0 1 1 1 0 PGAP1-like protein TfoX_C PF04994.8 gi|313117211|ref|YP_004044194.1| - 0.14 12.0 0.0 0.25 11.2 0.0 1.4 1 0 0 1 1 1 0 TfoX C-terminal domain CcmH PF03918.9 gi|313117212|ref|YP_004044195.1| - 0.094 11.7 0.0 0.15 11.0 0.0 1.3 1 0 0 1 1 1 0 Cytochrome C biogenesis protein MaoC_dehydratas PF01575.14 gi|313117213|ref|YP_004044196.1| - 5.4e-21 74.2 0.0 7.6e-21 73.7 0.0 1.2 1 0 0 1 1 1 1 MaoC like domain MaoC_dehydrat_N PF13452.1 gi|313117213|ref|YP_004044196.1| - 3.2e-07 30.1 0.0 1.5e-06 27.9 0.0 2.1 1 1 1 2 2 2 1 N-terminal half of MaoC dehydratase C1_1 PF00130.17 gi|313117214|ref|YP_004044197.1| - 7.7e-05 22.3 9.5 7.7e-05 22.3 6.6 2.0 1 1 1 2 2 2 1 Phorbol esters/diacylglycerol binding domain (C1 domain) Prok-RING_1 PF14446.1 gi|313117214|ref|YP_004044197.1| - 0.00069 19.3 14.6 0.0022 17.6 10.1 1.7 1 1 0 1 1 1 1 Prokaryotic RING finger family 1 zf-RING_2 PF13639.1 gi|313117214|ref|YP_004044197.1| - 0.3 10.9 14.2 0.58 10.0 9.8 1.5 1 1 0 1 1 1 0 Ring finger domain Desulfoferrod_N PF06397.7 gi|313117214|ref|YP_004044197.1| - 0.34 10.3 13.2 0.67 9.3 0.1 3.2 2 1 1 3 3 3 0 Desulfoferrodoxin, N-terminal domain YhfH PF14149.1 gi|313117214|ref|YP_004044197.1| - 0.56 10.0 0.3 0.56 10.0 0.2 3.0 1 1 2 3 3 3 0 YhfH-like protein zinc_ribbon_2 PF13240.1 gi|313117214|ref|YP_004044197.1| - 1.7 8.2 7.9 1.2 8.7 2.0 2.4 2 1 0 2 2 2 0 zinc-ribbon domain Prok-RING_2 PF14445.1 gi|313117214|ref|YP_004044197.1| - 1.8 8.5 10.1 3.1 7.8 7.0 1.4 1 1 0 1 1 1 0 Prokaryotic RING finger family 2 DZR PF12773.2 gi|313117214|ref|YP_004044197.1| - 2.2 8.1 12.6 9.5 6.1 8.7 1.9 1 1 0 1 1 1 0 Double zinc ribbon Ribosomal_L37e PF01907.14 gi|313117214|ref|YP_004044197.1| - 2.3 8.0 7.9 5.1 6.9 2.8 2.1 1 1 1 2 2 2 0 Ribosomal protein L37e DUF4206 PF13901.1 gi|313117214|ref|YP_004044197.1| - 2.6 7.5 10.1 3.3 7.2 7.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4206) PHD PF00628.24 gi|313117214|ref|YP_004044197.1| - 2.7 7.7 15.2 7.9 6.2 10.5 1.7 1 1 0 1 1 1 0 PHD-finger zf-HIT PF04438.11 gi|313117214|ref|YP_004044197.1| - 3.4 7.3 13.2 12 5.6 0.2 2.9 1 1 1 2 2 2 0 HIT zinc finger DNA_RNApol_7kD PF03604.8 gi|313117214|ref|YP_004044197.1| - 7.4 6.1 13.6 3.7 7.1 0.1 3.1 2 1 0 2 2 2 0 DNA directed RNA polymerase, 7 kDa subunit DUF35 PF01796.12 gi|313117215|ref|YP_004044198.1| - 6.9e-08 32.6 0.7 1.3e-07 31.7 0.5 1.4 1 0 0 1 1 1 1 DUF35 OB-fold domain Thiolase_C PF02803.13 gi|313117216|ref|YP_004044199.1| - 2.1e-07 30.3 0.1 5.6e-07 29.0 0.0 1.7 2 0 0 2 2 2 1 Thiolase, C-terminal domain Thiolase_N PF00108.18 gi|313117216|ref|YP_004044199.1| - 4e-05 22.7 0.0 6.6e-05 22.0 0.0 1.4 1 0 0 1 1 1 1 Thiolase, N-terminal domain Ketoacyl-synt_C PF02801.17 gi|313117216|ref|YP_004044199.1| - 0.0052 16.6 0.1 24 4.7 0.0 3.3 3 0 0 3 3 3 2 Beta-ketoacyl synthase, C-terminal domain adh_short PF00106.20 gi|313117217|ref|YP_004044200.1| - 3.1e-42 144.3 0.2 4e-42 143.9 0.1 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|313117217|ref|YP_004044200.1| - 2.3e-25 89.7 0.3 2.9e-25 89.4 0.2 1.0 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|313117217|ref|YP_004044200.1| - 1.5e-21 76.8 0.1 2e-21 76.4 0.0 1.2 1 0 0 1 1 1 1 KR domain Epimerase PF01370.16 gi|313117217|ref|YP_004044200.1| - 7.7e-05 22.2 0.8 0.00013 21.4 0.5 1.4 1 1 0 1 1 1 1 NAD dependent epimerase/dehydratase family Polysacc_synt_2 PF02719.10 gi|313117217|ref|YP_004044200.1| - 0.0034 16.3 0.2 0.0041 16.0 0.1 1.2 1 0 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.1 gi|313117217|ref|YP_004044200.1| - 0.0052 16.7 0.5 0.0077 16.2 0.4 1.4 1 1 0 1 1 1 1 NADH(P)-binding Pox_TAA1 PF03295.9 gi|313117217|ref|YP_004044200.1| - 0.16 11.6 0.1 1.7 8.3 0.0 2.2 2 0 0 2 2 2 0 Poxvirus trans-activator protein A1 C-terminal Carboxyl_trans PF01039.17 gi|313117218|ref|YP_004044201.1| - 1.6e-198 660.0 0.1 1.8e-198 659.8 0.1 1.0 1 0 0 1 1 1 1 Carboxyl transferase domain MdcE PF06833.6 gi|313117218|ref|YP_004044201.1| - 0.00046 19.4 0.2 0.0014 17.8 0.0 1.7 2 0 0 2 2 2 1 Malonate decarboxylase gamma subunit (MdcE) ACC_epsilon PF13822.1 gi|313117219|ref|YP_004044202.1| - 4.9e-05 23.6 8.0 4.9e-05 23.6 5.5 3.3 2 2 2 4 4 4 1 Acyl-CoA carboxylase epsilon subunit OAD_gamma PF04277.8 gi|313117219|ref|YP_004044202.1| - 0.035 14.4 13.3 0.024 14.9 7.2 2.3 1 1 1 2 2 2 0 Oxaloacetate decarboxylase, gamma chain ABC_tran PF00005.22 gi|313117220|ref|YP_004044203.1| - 4.3e-35 120.9 0.0 6.6e-35 120.3 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|313117220|ref|YP_004044203.1| - 9.4e-20 70.7 0.1 2.2e-19 69.5 0.0 1.7 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|313117220|ref|YP_004044203.1| - 7.6e-10 39.2 0.0 1.5e-07 31.6 0.0 2.1 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|313117220|ref|YP_004044203.1| - 3.4e-05 23.1 0.0 7.2e-05 22.1 0.0 1.5 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|313117220|ref|YP_004044203.1| - 4e-05 23.7 0.1 0.00084 19.4 0.1 2.2 1 1 0 1 1 1 1 AAA domain AAA_29 PF13555.1 gi|313117220|ref|YP_004044203.1| - 0.00077 18.9 0.0 0.0016 17.9 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_16 PF13191.1 gi|313117220|ref|YP_004044203.1| - 0.018 15.0 0.0 0.06 13.3 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain DUF258 PF03193.11 gi|313117220|ref|YP_004044203.1| - 0.02 14.0 0.0 0.038 13.1 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_18 PF13238.1 gi|313117220|ref|YP_004044203.1| - 0.027 14.7 0.0 0.066 13.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain NB-ARC PF00931.17 gi|313117220|ref|YP_004044203.1| - 0.055 12.3 0.1 0.13 11.0 0.0 1.6 2 0 0 2 2 2 0 NB-ARC domain AIG1 PF04548.11 gi|313117220|ref|YP_004044203.1| - 0.1 11.7 0.0 1.6 7.7 0.0 2.1 2 0 0 2 2 2 0 AIG1 family Zeta_toxin PF06414.7 gi|313117220|ref|YP_004044203.1| - 0.13 11.3 0.0 0.25 10.4 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin Sigma54_activat PF00158.21 gi|313117220|ref|YP_004044203.1| - 0.14 11.5 0.1 0.43 10.0 0.0 1.7 2 0 0 2 2 2 0 Sigma-54 interaction domain ABC_tran PF00005.22 gi|313117221|ref|YP_004044204.1| - 6.9e-28 97.6 0.0 1.1e-27 97.0 0.0 1.3 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|313117221|ref|YP_004044204.1| - 2e-17 63.3 0.4 5.2e-17 61.9 0.3 1.8 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|313117221|ref|YP_004044204.1| - 2.2e-10 40.9 0.2 4.1e-09 36.8 0.1 2.0 1 1 0 1 1 1 1 AAA domain SMC_N PF02463.14 gi|313117221|ref|YP_004044204.1| - 9.8e-05 21.6 0.1 0.00025 20.3 0.0 1.6 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_29 PF13555.1 gi|313117221|ref|YP_004044204.1| - 0.0026 17.2 0.0 0.0051 16.3 0.0 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_15 PF13175.1 gi|313117221|ref|YP_004044204.1| - 0.005 15.9 0.0 0.044 12.8 0.0 1.9 2 0 0 2 2 2 1 AAA ATPase domain PRK PF00485.13 gi|313117221|ref|YP_004044204.1| - 0.0059 16.1 0.0 0.009 15.5 0.0 1.3 1 0 0 1 1 1 1 Phosphoribulokinase / Uridine kinase family AAA_22 PF13401.1 gi|313117221|ref|YP_004044204.1| - 0.01 15.9 0.8 0.062 13.4 0.6 2.1 1 1 0 1 1 1 0 AAA domain FtsK_SpoIIIE PF01580.13 gi|313117221|ref|YP_004044204.1| - 0.025 14.0 0.0 0.047 13.1 0.0 1.4 1 0 0 1 1 1 0 FtsK/SpoIIIE family AAA_16 PF13191.1 gi|313117221|ref|YP_004044204.1| - 0.032 14.2 0.2 0.061 13.3 0.2 1.7 1 1 0 1 1 1 0 AAA ATPase domain DUF258 PF03193.11 gi|313117221|ref|YP_004044204.1| - 0.046 12.8 0.1 1.2 8.2 0.0 2.3 2 0 0 2 2 2 0 Protein of unknown function, DUF258 AAA_25 PF13481.1 gi|313117221|ref|YP_004044204.1| - 0.055 12.8 0.2 2.7 7.3 0.0 2.8 3 0 0 3 3 3 0 AAA domain ATP-synt_ab PF00006.20 gi|313117221|ref|YP_004044204.1| - 0.063 12.7 0.0 0.08 12.4 0.0 1.3 1 0 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain MobB PF03205.9 gi|313117221|ref|YP_004044204.1| - 0.068 12.8 0.1 0.12 12.0 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_17 PF13207.1 gi|313117221|ref|YP_004044204.1| - 0.083 13.7 0.1 0.14 13.0 0.0 1.6 1 1 0 1 1 1 0 AAA domain ABC_ATPase PF09818.4 gi|313117221|ref|YP_004044204.1| - 0.11 11.0 1.4 0.32 9.5 1.0 1.7 1 1 0 1 1 1 0 Predicted ATPase of the ABC class BPD_transp_1 PF00528.17 gi|313117222|ref|YP_004044205.1| - 1.9e-19 69.8 11.8 1.9e-19 69.8 8.1 2.6 2 2 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|313117222|ref|YP_004044205.1| - 4.2e-12 45.2 0.8 4.2e-12 45.2 0.6 2.7 2 0 0 2 2 2 1 N-terminal TM domain of oligopeptide transport permease C DUF204 PF02659.10 gi|313117222|ref|YP_004044205.1| - 0.067 13.3 0.1 0.067 13.3 0.0 3.6 4 0 0 4 4 4 0 Domain of unknown function DUF BPD_transp_1 PF00528.17 gi|313117223|ref|YP_004044206.1| - 3.1e-33 114.8 12.7 3.1e-33 114.8 8.8 2.1 3 0 0 3 3 3 1 Binding-protein-dependent transport system inner membrane component MscS_TM PF12794.2 gi|313117223|ref|YP_004044206.1| - 0.0067 15.0 0.7 0.0067 15.0 0.5 2.5 2 1 0 2 2 2 1 Mechanosensitive ion channel inner membrane domain 1 DUF1471 PF07338.8 gi|313117223|ref|YP_004044206.1| - 0.11 12.1 0.1 0.31 10.7 0.0 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF1471) SBP_bac_5 PF00496.17 gi|313117224|ref|YP_004044207.1| - 9.3e-50 169.4 7.7 1.2e-49 169.0 5.3 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle TAT_signal PF10518.4 gi|313117224|ref|YP_004044207.1| - 0.004 17.0 1.5 0.0098 15.8 1.1 1.7 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence ABC_tran PF00005.22 gi|313117225|ref|YP_004044208.1| - 8.6e-37 126.4 0.0 1.2e-36 126.0 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|313117225|ref|YP_004044208.1| - 7.3e-16 58.2 0.5 1.8e-15 57.0 0.3 1.7 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|313117225|ref|YP_004044208.1| - 7.7e-11 42.4 0.1 3.1e-08 33.9 0.0 2.1 1 1 0 1 1 1 1 AAA domain AAA_22 PF13401.1 gi|313117225|ref|YP_004044208.1| - 2.8e-05 24.2 0.1 0.0002 21.5 0.1 2.0 1 1 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|313117225|ref|YP_004044208.1| - 0.0011 18.9 0.3 0.0021 18.0 0.2 1.5 1 1 0 1 1 1 1 AAA ATPase domain DUF258 PF03193.11 gi|313117225|ref|YP_004044208.1| - 0.0012 18.0 0.0 0.002 17.3 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 ATP-synt_ab PF00006.20 gi|313117225|ref|YP_004044208.1| - 0.0061 16.0 0.0 0.0072 15.8 0.0 1.2 1 0 0 1 1 1 1 ATP synthase alpha/beta family, nucleotide-binding domain AAA_29 PF13555.1 gi|313117225|ref|YP_004044208.1| - 0.012 15.1 0.2 0.023 14.2 0.2 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA_10 PF12846.2 gi|313117225|ref|YP_004044208.1| - 0.021 14.2 0.0 0.037 13.4 0.0 1.3 1 1 0 1 1 1 0 AAA-like domain AAA_18 PF13238.1 gi|313117225|ref|YP_004044208.1| - 0.029 14.6 0.5 0.09 13.0 0.3 2.0 1 1 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|313117225|ref|YP_004044208.1| - 0.034 14.0 0.0 0.056 13.3 0.0 1.4 1 0 0 1 1 1 0 AAA domain SbcCD_C PF13558.1 gi|313117225|ref|YP_004044208.1| - 0.041 13.8 0.0 0.24 11.3 0.0 2.0 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_25 PF13481.1 gi|313117225|ref|YP_004044208.1| - 0.05 13.0 0.3 0.29 10.4 0.2 2.2 1 1 0 1 1 1 0 AAA domain RNA_helicase PF00910.17 gi|313117225|ref|YP_004044208.1| - 0.1 12.7 0.0 0.19 11.9 0.0 1.5 1 0 0 1 1 1 0 RNA helicase NB-ARC PF00931.17 gi|313117225|ref|YP_004044208.1| - 0.11 11.3 0.0 0.16 10.8 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain AAA_17 PF13207.1 gi|313117225|ref|YP_004044208.1| - 0.11 13.2 0.1 0.34 11.7 0.1 1.9 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|313117225|ref|YP_004044208.1| - 0.26 10.9 1.2 0.68 9.5 0.3 1.9 1 1 1 2 2 2 0 NACHT domain ABC_tran PF00005.22 gi|313117226|ref|YP_004044209.1| - 1.7e-26 93.1 0.0 2.3e-26 92.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter oligo_HPY PF08352.7 gi|313117226|ref|YP_004044209.1| - 5.8e-18 65.0 0.2 1.1e-17 64.0 0.2 1.5 1 0 0 1 1 1 1 Oligopeptide/dipeptide transporter, C-terminal region AAA_21 PF13304.1 gi|313117226|ref|YP_004044209.1| - 3e-08 33.9 0.2 1.5e-07 31.7 0.1 1.9 1 1 0 1 1 1 1 AAA domain AAA_25 PF13481.1 gi|313117226|ref|YP_004044209.1| - 0.012 15.0 0.2 1.6 8.1 0.0 2.4 2 0 0 2 2 2 0 AAA domain AAA_22 PF13401.1 gi|313117226|ref|YP_004044209.1| - 0.09 12.9 2.0 1.6 8.8 1.4 2.2 1 1 0 1 1 1 0 AAA domain AAA_10 PF12846.2 gi|313117226|ref|YP_004044209.1| - 0.19 11.1 0.9 8.1 5.7 0.2 2.2 1 1 0 2 2 2 0 AAA-like domain BPD_transp_1 PF00528.17 gi|313117227|ref|YP_004044210.1| - 6.8e-29 100.6 13.4 1.1e-28 99.9 6.6 2.0 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component OppC_N PF12911.2 gi|313117227|ref|YP_004044210.1| - 1.6e-16 59.3 0.2 1.6e-16 59.3 0.1 2.5 3 0 0 3 3 3 1 N-terminal TM domain of oligopeptide transport permease C BPD_transp_1 PF00528.17 gi|313117228|ref|YP_004044211.1| - 8e-45 152.6 14.5 8e-45 152.6 10.1 1.9 2 1 1 3 3 3 1 Binding-protein-dependent transport system inner membrane component SBP_bac_5 PF00496.17 gi|313117229|ref|YP_004044212.1| - 8.5e-70 235.4 1.6 1.1e-69 235.0 1.1 1.1 1 0 0 1 1 1 1 Bacterial extracellular solute-binding proteins, family 5 Middle IclR PF01614.13 gi|313117230|ref|YP_004044213.1| - 1.3e-26 92.8 0.5 1.4e-25 89.4 0.1 2.1 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|313117230|ref|YP_004044213.1| - 2.2e-07 30.3 0.1 5.1e-07 29.1 0.0 1.6 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|313117230|ref|YP_004044213.1| - 0.00026 20.5 0.1 0.00069 19.2 0.1 1.7 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|313117230|ref|YP_004044213.1| - 0.0022 17.6 0.0 0.0056 16.3 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_20 PF12840.2 gi|313117230|ref|YP_004044213.1| - 0.0025 17.5 0.1 0.0055 16.4 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_24 PF13412.1 gi|313117230|ref|YP_004044213.1| - 0.0026 17.0 0.0 0.0062 15.9 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding TrmB PF01978.14 gi|313117230|ref|YP_004044213.1| - 0.0073 15.9 0.0 0.022 14.4 0.0 1.8 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB B-block_TFIIIC PF04182.7 gi|313117230|ref|YP_004044213.1| - 0.01 15.6 0.0 0.023 14.5 0.0 1.6 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_9 PF08221.6 gi|313117230|ref|YP_004044213.1| - 0.013 15.3 0.1 0.029 14.2 0.1 1.5 1 0 0 1 1 1 0 RNA polymerase III subunit RPC82 helix-turn-helix domain HTH_DeoR PF08220.7 gi|313117230|ref|YP_004044213.1| - 0.017 14.6 0.0 0.038 13.5 0.0 1.5 1 0 0 1 1 1 0 DeoR-like helix-turn-helix domain MarR PF01047.17 gi|313117230|ref|YP_004044213.1| - 0.018 14.7 0.1 0.044 13.4 0.0 1.6 1 0 0 1 1 1 0 MarR family HTH_34 PF13601.1 gi|313117230|ref|YP_004044213.1| - 0.051 13.6 0.0 0.13 12.3 0.0 1.7 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_10 PF04967.7 gi|313117230|ref|YP_004044213.1| - 0.091 12.3 0.1 0.36 10.4 0.0 1.9 2 0 0 2 2 2 0 HTH DNA binding domain HTH_11 PF08279.7 gi|313117230|ref|YP_004044213.1| - 0.11 12.1 0.0 0.33 10.6 0.0 1.8 2 0 0 2 2 2 0 HTH domain SpoIIID PF12116.3 gi|313117230|ref|YP_004044213.1| - 0.13 12.1 0.1 0.37 10.7 0.0 1.8 2 0 0 2 2 1 0 Stage III sporulation protein D Sulfolobus_pRN PF05584.6 gi|313117230|ref|YP_004044213.1| - 0.13 12.2 0.2 0.37 10.7 0.1 1.8 2 0 0 2 2 2 0 Sulfolobus plasmid regulatory protein AMP-binding PF00501.23 gi|313117231|ref|YP_004044214.1| - 2.5e-71 240.2 0.1 3.1e-71 239.9 0.1 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|313117231|ref|YP_004044214.1| - 1.3e-12 48.5 0.0 3e-12 47.3 0.0 1.6 1 0 0 1 1 1 1 AMP-binding enzyme C-terminal domain DUF3701 PF12482.3 gi|313117231|ref|YP_004044214.1| - 0.059 13.1 0.0 0.17 11.6 0.0 1.7 1 0 0 1 1 1 0 Phage integrase protein Acyl-CoA_dh_1 PF00441.19 gi|313117232|ref|YP_004044215.1| - 1.7e-33 115.8 3.1 4.2e-33 114.5 1.1 2.1 2 0 0 2 2 2 1 Acyl-CoA dehydrogenase, C-terminal domain Acyl-CoA_dh_M PF02770.14 gi|313117232|ref|YP_004044215.1| - 3.8e-13 48.7 0.0 7.3e-13 47.8 0.0 1.5 1 0 0 1 1 1 1 Acyl-CoA dehydrogenase, middle domain Acyl-CoA_dh_2 PF08028.6 gi|313117232|ref|YP_004044215.1| - 4.1e-09 36.7 7.5 2.3e-08 34.3 0.5 2.3 2 0 0 2 2 2 2 Acyl-CoA dehydrogenase, C-terminal domain IclR PF01614.13 gi|313117233|ref|YP_004044216.1| - 2.2e-35 121.1 0.3 5.9e-35 119.7 0.0 1.8 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_IclR PF09339.5 gi|313117233|ref|YP_004044216.1| - 3.9e-10 39.1 0.2 2.7e-09 36.4 0.1 2.2 2 0 0 2 2 2 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|313117233|ref|YP_004044216.1| - 2.1e-07 30.5 0.1 7.2e-07 28.7 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_5 PF01022.15 gi|313117233|ref|YP_004044216.1| - 3.8e-07 29.6 0.1 1.1e-06 28.1 0.0 1.8 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family HTH_20 PF12840.2 gi|313117233|ref|YP_004044216.1| - 4.4e-06 26.4 0.1 9.2e-06 25.3 0.1 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|313117233|ref|YP_004044216.1| - 5.9e-06 25.8 0.0 1.3e-05 24.8 0.0 1.6 1 0 0 1 1 1 1 MarR family HTH_27 PF13463.1 gi|313117233|ref|YP_004044216.1| - 3.3e-05 24.1 0.6 0.0032 17.7 0.1 2.4 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_34 PF13601.1 gi|313117233|ref|YP_004044216.1| - 7.8e-05 22.6 0.2 0.0016 18.4 0.0 2.3 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|313117233|ref|YP_004044216.1| - 9.7e-05 21.6 0.1 0.00046 19.5 0.0 2.1 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_38 PF13936.1 gi|313117233|ref|YP_004044216.1| - 0.00017 21.0 0.1 0.00037 20.0 0.1 1.5 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_DeoR PF08220.7 gi|313117233|ref|YP_004044216.1| - 0.0018 17.7 0.1 0.0046 16.4 0.1 1.7 1 0 0 1 1 1 1 DeoR-like helix-turn-helix domain HTH_11 PF08279.7 gi|313117233|ref|YP_004044216.1| - 0.0034 16.9 0.5 0.075 12.6 0.1 2.7 3 0 0 3 3 3 1 HTH domain TrmB PF01978.14 gi|313117233|ref|YP_004044216.1| - 0.0093 15.6 0.0 0.023 14.4 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB Fe_dep_repress PF01325.14 gi|313117233|ref|YP_004044216.1| - 0.012 15.5 0.1 0.028 14.3 0.1 1.6 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain HTH_23 PF13384.1 gi|313117233|ref|YP_004044216.1| - 0.053 13.2 0.0 0.11 12.1 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain Sigma70_ECF PF07638.6 gi|313117233|ref|YP_004044216.1| - 0.11 12.1 0.1 0.35 10.5 0.1 1.7 2 0 0 2 2 2 0 ECF sigma factor HATPase_c PF02518.21 gi|313117234|ref|YP_004044217.1| - 1.4e-29 102.0 0.0 2.8e-29 101.0 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.6 gi|313117234|ref|YP_004044217.1| - 2e-12 46.9 0.0 9.9e-12 44.7 0.0 2.2 2 0 0 2 2 2 1 PAS fold HAMP PF00672.20 gi|313117234|ref|YP_004044217.1| - 9.2e-11 41.7 1.2 1.6e-10 40.9 0.1 2.0 2 0 0 2 2 2 1 HAMP domain PAS PF00989.19 gi|313117234|ref|YP_004044217.1| - 2.6e-10 40.0 0.0 1e-09 38.1 0.0 2.0 2 0 0 2 2 2 1 PAS fold HisKA PF00512.20 gi|313117234|ref|YP_004044217.1| - 3.3e-10 39.7 1.5 6.8e-10 38.7 0.0 2.4 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_9 PF13426.1 gi|313117234|ref|YP_004044217.1| - 3e-07 30.7 0.0 1.2e-06 28.8 0.0 2.0 2 0 0 2 2 2 1 PAS domain PAS_4 PF08448.5 gi|313117234|ref|YP_004044217.1| - 2.3e-06 27.6 0.4 1.1e-05 25.3 0.0 2.3 2 0 0 2 2 2 1 PAS fold HATPase_c_5 PF14501.1 gi|313117234|ref|YP_004044217.1| - 2.5e-06 27.1 0.0 8.8e-06 25.3 0.0 1.9 2 0 0 2 2 2 1 GHKL domain HATPase_c_3 PF13589.1 gi|313117234|ref|YP_004044217.1| - 0.00029 20.4 0.0 0.0006 19.4 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_2 PF13581.1 gi|313117234|ref|YP_004044217.1| - 0.00097 18.9 0.0 0.0022 17.7 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain ADSL_C PF10397.4 gi|313117234|ref|YP_004044217.1| - 0.012 15.5 0.1 0.033 14.1 0.1 1.7 1 0 0 1 1 1 0 Adenylosuccinate lyase C-terminus FxsA PF04186.8 gi|313117234|ref|YP_004044217.1| - 0.02 14.5 0.3 0.04 13.5 0.2 1.5 1 0 0 1 1 1 0 FxsA cytoplasmic membrane protein CorA PF01544.13 gi|313117234|ref|YP_004044217.1| - 0.028 13.4 0.4 0.07 12.1 0.3 1.6 1 0 0 1 1 1 0 CorA-like Mg2+ transporter protein SBP_bac_1 PF01547.20 gi|313117235|ref|YP_004044218.1| - 6.8e-21 75.3 2.2 2.9e-20 73.2 1.5 1.8 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|313117235|ref|YP_004044218.1| - 6.3e-19 68.7 0.2 9.3e-19 68.2 0.1 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein ApbA_C PF08546.6 gi|313117235|ref|YP_004044218.1| - 0.028 14.4 0.0 7.2 6.6 0.0 2.5 1 1 1 2 2 2 0 Ketopantoate reductase PanE/ApbA C terminal SpoVIF PF14069.1 gi|313117235|ref|YP_004044218.1| - 0.12 12.1 0.0 0.21 11.3 0.0 1.4 1 0 0 1 1 1 0 Stage VI sporulation protein F Peripla_BP_6 PF13458.1 gi|313117236|ref|YP_004044219.1| - 6.8e-37 127.5 8.4 9.3e-37 127.1 5.8 1.1 1 0 0 1 1 1 1 Periplasmic binding protein ANF_receptor PF01094.23 gi|313117236|ref|YP_004044219.1| - 1.8e-24 86.1 0.1 3.8e-24 85.1 0.1 1.5 1 1 0 1 1 1 1 Receptor family ligand binding region Peripla_BP_5 PF13433.1 gi|313117236|ref|YP_004044219.1| - 9e-09 34.5 0.0 6e-08 31.8 0.0 2.1 3 0 0 3 3 3 1 Periplasmic binding protein domain TAT_signal PF10518.4 gi|313117236|ref|YP_004044219.1| - 0.002 18.0 3.1 0.002 18.0 2.1 2.8 3 0 0 3 3 3 1 TAT (twin-arginine translocation) pathway signal sequence MCPsignal PF00015.16 gi|313117237|ref|YP_004044220.1| - 5.3e-51 173.1 69.3 8.8e-51 172.4 25.3 3.2 2 1 1 3 3 3 2 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.20 gi|313117237|ref|YP_004044220.1| - 3.4e-09 36.7 0.1 3.4e-09 36.7 0.1 6.7 8 1 1 9 9 9 2 HAMP domain Laminin_II PF06009.7 gi|313117237|ref|YP_004044220.1| - 0.01 15.5 6.6 0.01 15.5 4.6 4.6 2 2 2 4 4 4 0 Laminin Domain II KxDL PF10241.4 gi|313117237|ref|YP_004044220.1| - 0.047 13.5 8.1 0.99 9.3 0.1 3.4 2 2 2 4 4 4 0 Uncharacterized conserved protein BLOC1_2 PF10046.4 gi|313117237|ref|YP_004044220.1| - 1 9.5 33.1 1.5 9.0 1.8 6.1 3 2 1 6 6 6 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 DUF2450 PF10475.4 gi|313117237|ref|YP_004044220.1| - 2.1 7.1 16.6 0.031 13.1 1.2 3.0 2 2 0 2 2 2 0 Protein of unknown function N-terminal domain (DUF2450) NPV_P10 PF05531.7 gi|313117237|ref|YP_004044220.1| - 3.3 8.0 23.8 0.1 12.8 1.1 5.3 4 2 1 5 5 5 0 Nucleopolyhedrovirus P10 protein DUF1628 PF07790.6 gi|313117238|ref|YP_004044221.1| - 1.9e-08 34.9 0.6 3.5e-08 34.0 0.2 1.6 2 0 0 2 2 2 1 Protein of unknown function (DUF1628) 7TMR-DISM_7TM PF07695.6 gi|313117239|ref|YP_004044222.1| - 0.054 13.1 7.4 0.066 12.8 5.1 1.2 1 0 0 1 1 1 0 7TM diverse intracellular signalling RseC_MucC PF04246.7 gi|313117239|ref|YP_004044222.1| - 5.2 6.6 6.8 11 5.5 0.1 2.3 1 1 2 3 3 3 0 Positive regulator of sigma(E), RseC/MucC DUF4330 PF14221.1 gi|313117240|ref|YP_004044223.1| - 0.036 13.9 0.1 0.064 13.1 0.1 1.3 1 1 0 1 1 1 0 Domain of unknown function (DUF4330) ABC2_membrane_2 PF12679.2 gi|313117242|ref|YP_004044225.1| - 1.8e-28 99.2 16.5 5.7e-27 94.2 11.5 2.0 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|313117242|ref|YP_004044225.1| - 1.8e-13 50.2 22.4 1.8e-13 50.2 15.5 1.8 1 1 1 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|313117242|ref|YP_004044225.1| - 8.1e-07 28.3 21.0 1e-06 28.0 14.6 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|313117242|ref|YP_004044225.1| - 0.0003 20.1 9.3 0.00057 19.2 6.5 1.5 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC_tran PF00005.22 gi|313117243|ref|YP_004044226.1| - 6.2e-30 104.2 0.0 8.8e-30 103.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|313117243|ref|YP_004044226.1| - 4.9e-15 56.2 0.1 3.6e-11 43.5 0.0 2.1 1 1 1 2 2 2 2 AAA domain SbcCD_C PF13558.1 gi|313117243|ref|YP_004044226.1| - 0.0062 16.4 0.0 0.029 14.2 0.0 2.1 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_10 PF12846.2 gi|313117243|ref|YP_004044226.1| - 0.0082 15.6 0.1 0.034 13.5 0.1 1.9 1 1 0 1 1 1 1 AAA-like domain AAA_29 PF13555.1 gi|313117243|ref|YP_004044226.1| - 0.011 15.2 0.0 0.02 14.3 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain SMC_N PF02463.14 gi|313117243|ref|YP_004044226.1| - 0.037 13.2 0.0 7.1 5.7 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_23 PF13476.1 gi|313117243|ref|YP_004044226.1| - 0.037 14.3 0.0 0.043 14.1 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|313117243|ref|YP_004044226.1| - 0.066 12.7 0.0 0.1 12.1 0.0 1.5 1 1 0 1 1 1 0 AAA domain DUF258 PF03193.11 gi|313117243|ref|YP_004044226.1| - 0.069 12.3 0.0 0.11 11.6 0.0 1.4 1 0 0 1 1 1 0 Protein of unknown function, DUF258 SRP54 PF00448.17 gi|313117243|ref|YP_004044226.1| - 0.093 12.1 0.0 0.16 11.4 0.0 1.3 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_33 PF13671.1 gi|313117243|ref|YP_004044226.1| - 0.14 12.0 0.0 0.29 10.9 0.0 1.6 1 1 0 1 1 1 0 AAA domain CARDB PF07705.6 gi|313117244|ref|YP_004044227.1| - 0.059 13.4 0.1 2.3 8.3 0.0 2.3 2 0 0 2 2 2 0 CARDB Lipase_bact_N PF12262.3 gi|313117244|ref|YP_004044227.1| - 0.072 12.2 0.0 0.096 11.8 0.0 1.1 1 0 0 1 1 1 0 Bacterial virulence factor lipase N-terminal DUF1573 PF07610.6 gi|313117244|ref|YP_004044227.1| - 0.12 11.9 0.0 0.74 9.4 0.0 2.1 2 0 0 2 2 2 0 Protein of unknown function (DUF1573) DUF11 PF01345.13 gi|313117244|ref|YP_004044227.1| - 0.14 12.2 0.4 0.34 10.9 0.1 1.9 2 0 0 2 2 2 0 Domain of unknown function DUF11 EamA PF00892.15 gi|313117245|ref|YP_004044228.1| - 1.4e-32 112.3 27.1 6.1e-18 65.0 5.3 2.7 2 1 1 3 3 3 2 EamA-like transporter family TPT PF03151.11 gi|313117245|ref|YP_004044228.1| - 0.00035 20.2 17.7 0.00049 19.7 3.9 3.1 3 0 0 3 3 3 2 Triose-phosphate Transporter family DUF914 PF06027.7 gi|313117245|ref|YP_004044228.1| - 0.00039 19.3 4.2 0.00073 18.4 2.9 1.4 1 1 0 1 1 1 1 Eukaryotic protein of unknown function (DUF914) EmrE PF13536.1 gi|313117245|ref|YP_004044228.1| - 0.015 15.4 30.0 0.19 11.9 6.0 3.5 1 1 2 3 3 3 0 Multidrug resistance efflux transporter UAA PF08449.6 gi|313117245|ref|YP_004044228.1| - 7.1 5.4 16.3 0.036 12.9 1.3 3.0 1 1 0 3 3 3 0 UAA transporter family AsnC_trans_reg PF01037.16 gi|313117246|ref|YP_004044229.1| - 3.1e-09 36.4 0.8 5.2e-09 35.6 0.2 1.7 2 0 0 2 2 2 1 AsnC family HTH_24 PF13412.1 gi|313117246|ref|YP_004044229.1| - 1.2e-08 34.2 0.0 2e-08 33.4 0.0 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_AsnC-type PF13404.1 gi|313117246|ref|YP_004044229.1| - 0.00022 20.6 0.0 0.00046 19.6 0.0 1.6 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_IclR PF09339.5 gi|313117246|ref|YP_004044229.1| - 0.00027 20.4 0.0 0.0014 18.1 0.0 2.0 2 0 0 2 2 2 1 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|313117246|ref|YP_004044229.1| - 0.00062 19.3 0.0 0.00098 18.7 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.1 gi|313117246|ref|YP_004044229.1| - 0.00075 19.7 0.1 0.0018 18.5 0.1 1.6 1 0 0 1 1 1 1 Winged helix DNA-binding domain HTH_20 PF12840.2 gi|313117246|ref|YP_004044229.1| - 0.0029 17.3 0.0 0.0053 16.5 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain GYD PF08734.6 gi|313117246|ref|YP_004044229.1| - 0.0066 16.1 0.0 0.011 15.4 0.0 1.5 1 0 0 1 1 1 1 GYD domain Replic_Relax PF13814.1 gi|313117246|ref|YP_004044229.1| - 0.018 14.9 0.0 1.9 8.3 0.0 2.1 2 0 0 2 2 2 0 Replication-relaxation TrmB PF01978.14 gi|313117246|ref|YP_004044229.1| - 0.024 14.3 0.0 0.043 13.5 0.0 1.4 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DUF2250 PF10007.4 gi|313117246|ref|YP_004044229.1| - 0.03 14.2 0.1 0.055 13.3 0.0 1.4 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) GvpK PF05121.7 gi|313117246|ref|YP_004044229.1| - 0.11 12.3 0.9 0.28 11.0 0.0 1.9 2 0 0 2 2 2 0 Gas vesicle protein K HTH_10 PF04967.7 gi|313117247|ref|YP_004044230.1| - 5.1e-18 64.3 0.0 9.3e-18 63.5 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4_2 PF08281.7 gi|313117247|ref|YP_004044230.1| - 7.7e-08 31.6 0.2 1.7e-06 27.4 0.0 2.6 2 1 0 2 2 2 1 Sigma-70, region 4 GerE PF00196.14 gi|313117247|ref|YP_004044230.1| - 4.3e-06 25.9 0.1 3.3e-05 23.0 0.1 2.1 1 1 0 1 1 1 1 Bacterial regulatory proteins, luxR family HTH_38 PF13936.1 gi|313117247|ref|YP_004044230.1| - 7.5e-06 25.4 0.0 1.9e-05 24.1 0.0 1.6 1 0 0 1 1 1 1 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|313117247|ref|YP_004044230.1| - 0.00054 19.2 0.0 0.0011 18.1 0.0 1.6 1 0 0 1 1 1 1 Sigma-70, region 4 LexA_DNA_bind PF01726.11 gi|313117247|ref|YP_004044230.1| - 0.0007 19.1 0.0 0.0016 17.9 0.0 1.6 1 0 0 1 1 1 1 LexA DNA binding domain MarR_2 PF12802.2 gi|313117247|ref|YP_004044230.1| - 0.0022 17.6 0.1 0.011 15.4 0.0 2.1 2 0 0 2 2 2 1 MarR family HTH_20 PF12840.2 gi|313117247|ref|YP_004044230.1| - 0.011 15.5 0.1 0.026 14.3 0.1 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_24 PF13412.1 gi|313117247|ref|YP_004044230.1| - 0.012 14.9 0.0 0.028 13.8 0.0 1.7 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding HTH_23 PF13384.1 gi|313117247|ref|YP_004044230.1| - 0.022 14.3 0.0 0.054 13.1 0.0 1.7 1 0 0 1 1 1 0 Homeodomain-like domain HTH_40 PF14493.1 gi|313117247|ref|YP_004044230.1| - 0.089 13.0 0.0 0.21 11.8 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain Amidohydro_1 PF01979.15 gi|313117248|ref|YP_004044231.1| - 4.6e-33 115.2 0.0 6.4e-33 114.7 0.0 1.2 1 0 0 1 1 1 1 Amidohydrolase family Amidohydro_4 PF13147.1 gi|313117248|ref|YP_004044231.1| - 4.7e-20 72.7 0.8 3.3e-18 66.6 0.1 2.8 2 1 0 2 2 2 1 Amidohydrolase Amidohydro_5 PF13594.1 gi|313117248|ref|YP_004044231.1| - 4.7e-14 51.9 2.8 8e-14 51.2 0.1 2.6 3 0 0 3 3 3 1 Amidohydrolase Amidohydro_3 PF07969.6 gi|313117248|ref|YP_004044231.1| - 4.6e-13 49.1 0.2 1.5e-10 40.9 0.0 2.3 2 0 0 2 2 2 2 Amidohydrolase family D-aminoacyl_C PF07908.7 gi|313117248|ref|YP_004044231.1| - 0.12 11.6 0.9 11 5.4 0.2 2.5 2 0 0 2 2 2 0 D-aminoacylase, C-terminal region Cupin_2 PF07883.6 gi|313117249|ref|YP_004044232.1| - 7.1e-11 41.4 1.8 1.4e-10 40.5 1.2 1.4 1 0 0 1 1 1 1 Cupin domain AraC_binding PF02311.14 gi|313117249|ref|YP_004044232.1| - 0.0016 18.1 0.0 0.0023 17.5 0.0 1.4 1 0 0 1 1 1 1 AraC-like ligand binding domain Cupin_1 PF00190.17 gi|313117249|ref|YP_004044232.1| - 0.0035 16.7 0.0 0.0058 16.0 0.0 1.3 1 0 0 1 1 1 1 Cupin Cupin_3 PF05899.7 gi|313117249|ref|YP_004044232.1| - 0.0098 15.2 0.0 0.02 14.2 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function (DUF861) Cupin_6 PF12852.2 gi|313117249|ref|YP_004044232.1| - 0.049 13.2 0.0 0.067 12.8 0.0 1.3 1 0 0 1 1 1 0 Cupin Strep_67kDa_ant PF06100.6 gi|313117250|ref|YP_004044233.1| - 1.2e-180 601.2 0.0 1.3e-180 601.0 0.0 1.0 1 0 0 1 1 1 1 Streptococcal 67 kDa myosin-cross-reactive antigen like family NAD_binding_8 PF13450.1 gi|313117250|ref|YP_004044233.1| - 2.9e-05 23.9 0.1 6.6e-05 22.8 0.1 1.6 1 0 0 1 1 1 1 NAD(P)-binding Rossmann-like domain DAO PF01266.19 gi|313117250|ref|YP_004044233.1| - 0.0017 17.2 0.0 0.0063 15.4 0.0 1.7 1 1 0 1 1 1 1 FAD dependent oxidoreductase PadR PF03551.9 gi|313117251|ref|YP_004044234.1| - 4.2e-15 55.2 1.0 5.3e-15 54.9 0.7 1.1 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_45 PF14947.1 gi|313117251|ref|YP_004044234.1| - 0.00034 20.3 0.4 0.00053 19.7 0.2 1.4 1 0 0 1 1 1 1 Winged helix-turn-helix HTH_27 PF13463.1 gi|313117251|ref|YP_004044234.1| - 0.011 16.0 0.1 0.013 15.8 0.1 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain DUF1495 PF07381.6 gi|313117251|ref|YP_004044234.1| - 0.013 15.1 0.0 0.02 14.5 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain (DUF1495) MarR_2 PF12802.2 gi|313117251|ref|YP_004044234.1| - 0.032 13.8 0.1 0.29 10.8 0.1 2.0 1 1 0 1 1 1 0 MarR family HTH_34 PF13601.1 gi|313117251|ref|YP_004044234.1| - 0.037 14.0 0.0 0.047 13.7 0.0 1.2 1 0 0 1 1 1 0 Winged helix DNA-binding domain B-block_TFIIIC PF04182.7 gi|313117251|ref|YP_004044234.1| - 0.079 12.8 0.0 0.19 11.6 0.0 1.7 1 1 0 1 1 1 0 B-block binding subunit of TFIIIC MFS_1 PF07690.11 gi|313117252|ref|YP_004044235.1| - 3.4e-13 49.0 34.0 3.4e-13 49.0 23.5 1.9 1 1 1 2 2 2 2 Major Facilitator Superfamily UPF0227 PF05728.7 gi|313117252|ref|YP_004044235.1| - 0.18 11.4 0.1 0.3 10.7 0.1 1.2 1 0 0 1 1 1 0 Uncharacterised protein family (UPF0227) UvrD-helicase PF00580.16 gi|313117253|ref|YP_004044236.1| - 2.2e-49 168.4 0.1 7.1e-49 166.7 0.1 1.8 1 1 0 1 1 1 1 UvrD/REP helicase N-terminal domain UvrD_C PF13361.1 gi|313117253|ref|YP_004044236.1| - 2.4e-34 119.3 0.0 2.2e-18 66.8 0.0 2.3 1 1 0 2 2 2 2 UvrD-like helicase C-terminal domain AAA_19 PF13245.1 gi|313117253|ref|YP_004044236.1| - 3.1e-13 49.2 0.0 1.8e-12 46.7 0.0 2.2 2 0 0 2 2 2 1 Part of AAA domain PDDEXK_1 PF12705.2 gi|313117253|ref|YP_004044236.1| - 9e-09 35.0 0.2 9e-09 35.0 0.2 2.5 3 2 0 3 3 3 1 PD-(D/E)XK nuclease superfamily UvrD_C_2 PF13538.1 gi|313117253|ref|YP_004044236.1| - 1.5e-08 34.7 0.1 0.001 19.1 0.0 2.8 2 0 0 2 2 2 2 UvrD-like helicase C-terminal domain AAA_30 PF13604.1 gi|313117253|ref|YP_004044236.1| - 9.2e-05 22.0 0.0 0.00023 20.7 0.0 1.6 1 0 0 1 1 1 1 AAA domain DUF2800 PF10926.3 gi|313117253|ref|YP_004044236.1| - 0.0006 19.0 0.0 0.0014 17.7 0.0 1.7 1 0 0 1 1 1 1 Protein of unknown function (DUF2800) AAA_11 PF13086.1 gi|313117253|ref|YP_004044236.1| - 0.0035 16.9 0.1 1 8.9 0.0 2.4 2 0 0 2 2 2 2 AAA domain AAA_12 PF13087.1 gi|313117253|ref|YP_004044236.1| - 0.0051 16.2 0.0 0.12 11.7 0.0 2.4 2 0 0 2 2 2 1 AAA domain Viral_helicase1 PF01443.13 gi|313117253|ref|YP_004044236.1| - 0.025 14.0 2.8 24 4.3 0.1 4.1 4 0 0 4 4 4 0 Viral (Superfamily 1) RNA helicase PhoH PF02562.11 gi|313117253|ref|YP_004044236.1| - 0.058 12.6 0.3 13 4.9 0.0 2.8 3 0 0 3 3 3 0 PhoH-like protein TetR_N PF00440.18 gi|313117253|ref|YP_004044236.1| - 0.1 12.2 0.0 0.48 10.1 0.0 2.2 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family PDDEXK_1 PF12705.2 gi|313117254|ref|YP_004044237.1| - 6.4e-18 65.0 0.5 1.7e-17 63.6 0.4 1.7 1 0 0 1 1 1 1 PD-(D/E)XK nuclease superfamily MaoC_dehydrat_N PF13452.1 gi|313117255|ref|YP_004044238.1| - 2e-09 37.3 0.2 1.8e-08 34.2 0.2 1.9 1 1 0 1 1 1 1 N-terminal half of MaoC dehydratase MaoC_dehydratas PF01575.14 gi|313117255|ref|YP_004044238.1| - 1.7e-05 24.2 0.1 5e-05 22.6 0.1 1.7 1 1 0 1 1 1 1 MaoC like domain 4HBT PF03061.17 gi|313117255|ref|YP_004044238.1| - 0.052 13.6 0.0 0.087 12.9 0.0 1.4 1 0 0 1 1 1 0 Thioesterase superfamily AfsA PF03756.8 gi|313117255|ref|YP_004044238.1| - 0.057 13.1 0.1 0.09 12.5 0.0 1.4 1 1 0 1 1 1 0 A-factor biosynthesis hotdog domain Penicillinase_R PF03965.11 gi|313117256|ref|YP_004044239.1| - 8e-12 45.2 0.0 8.8e-12 45.1 0.0 1.1 1 0 0 1 1 1 1 Penicillinase repressor FUR PF01475.14 gi|313117256|ref|YP_004044239.1| - 2.7e-05 24.0 0.1 3.5e-05 23.7 0.0 1.1 1 0 0 1 1 1 1 Ferric uptake regulator family Arg_repressor PF01316.16 gi|313117256|ref|YP_004044239.1| - 0.00063 19.2 0.3 0.00095 18.6 0.2 1.2 1 0 0 1 1 1 1 Arginine repressor, DNA binding domain DUF480 PF04337.7 gi|313117256|ref|YP_004044239.1| - 0.0036 17.1 0.0 0.0042 16.9 0.0 1.2 1 0 0 1 1 1 1 Protein of unknown function, DUF480 MarR_2 PF12802.2 gi|313117256|ref|YP_004044239.1| - 0.006 16.2 3.5 0.028 14.1 1.3 2.5 2 1 0 2 2 2 1 MarR family PadR PF03551.9 gi|313117256|ref|YP_004044239.1| - 0.0095 15.6 0.1 0.013 15.2 0.1 1.2 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family HTH_27 PF13463.1 gi|313117256|ref|YP_004044239.1| - 0.012 15.8 0.6 0.041 14.2 0.2 2.0 2 1 0 2 2 2 0 Winged helix DNA-binding domain HTH_32 PF13565.1 gi|313117256|ref|YP_004044239.1| - 0.016 16.0 1.3 0.038 14.7 0.2 2.0 1 1 1 2 2 2 0 Homeodomain-like domain TrmB PF01978.14 gi|313117256|ref|YP_004044239.1| - 0.034 13.8 0.7 0.075 12.7 0.5 1.7 1 1 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|313117256|ref|YP_004044239.1| - 0.047 13.4 0.5 0.072 12.9 0.4 1.3 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_Tnp_Tc3_2 PF01498.13 gi|313117256|ref|YP_004044239.1| - 0.049 13.6 0.2 0.088 12.8 0.1 1.4 1 0 0 1 1 1 0 Transposase Replic_Relax PF13814.1 gi|313117256|ref|YP_004044239.1| - 0.095 12.5 0.1 0.097 12.5 0.1 1.2 1 0 0 1 1 1 0 Replication-relaxation HTH_12 PF08461.5 gi|313117256|ref|YP_004044239.1| - 0.11 12.1 0.5 0.23 11.2 0.4 1.5 1 0 0 1 1 1 0 Ribonuclease R winged-helix domain Copper-bind PF00127.15 gi|313117257|ref|YP_004044240.1| - 6.3e-18 64.8 1.7 1.4e-17 63.7 1.2 1.6 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.1 gi|313117257|ref|YP_004044240.1| - 0.0016 18.2 2.4 0.029 14.2 1.7 2.2 1 1 0 1 1 1 1 Cupredoxin-like domain COX2 PF00116.15 gi|313117258|ref|YP_004044241.1| - 3.7e-15 55.8 0.0 8.1e-15 54.7 0.0 1.6 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, periplasmic domain Cupredoxin_1 PF13473.1 gi|313117258|ref|YP_004044241.1| - 1.6e-07 31.1 0.0 4e-07 29.8 0.0 1.7 1 0 0 1 1 1 1 Cupredoxin-like domain TAT_signal PF10518.4 gi|313117258|ref|YP_004044241.1| - 0.00049 19.8 2.8 0.00083 19.1 1.9 1.4 1 0 0 1 1 1 1 TAT (twin-arginine translocation) pathway signal sequence Trp_oprn_chp PF09534.5 gi|313117259|ref|YP_004044242.1| - 5.4 6.5 8.4 6.4 6.3 3.8 2.3 2 1 0 2 2 2 0 Tryptophan-associated transmembrane protein (Trp_oprn_chp) NosD PF05048.8 gi|313117260|ref|YP_004044243.1| - 1.2e-51 175.1 14.9 5.3e-49 166.5 7.8 2.1 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) Beta_helix PF13229.1 gi|313117260|ref|YP_004044243.1| - 9.7e-25 87.1 15.3 1.3e-17 63.9 2.3 2.4 1 1 1 2 2 2 2 Right handed beta helix region DUF1565 PF07602.6 gi|313117260|ref|YP_004044243.1| - 3.7e-07 29.5 6.0 0.0088 15.2 0.0 2.3 1 1 1 2 2 2 2 Protein of unknown function (DUF1565) VCBS PF13517.1 gi|313117260|ref|YP_004044243.1| - 0.0076 16.5 0.8 0.0076 16.5 0.5 3.0 3 0 0 3 3 3 1 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella Lsm_C PF14894.1 gi|313117260|ref|YP_004044243.1| - 0.11 12.0 0.0 0.25 10.9 0.0 1.5 1 0 0 1 1 1 0 Lsm C-terminal ABC_tran PF00005.22 gi|313117261|ref|YP_004044244.1| - 6e-32 110.8 0.0 4.6e-31 107.9 0.0 2.0 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|313117261|ref|YP_004044244.1| - 7e-11 42.6 0.1 3.3e-07 30.5 0.0 2.1 2 0 0 2 2 2 2 AAA domain DUF258 PF03193.11 gi|313117261|ref|YP_004044244.1| - 0.011 14.9 0.0 0.016 14.3 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_10 PF12846.2 gi|313117261|ref|YP_004044244.1| - 0.012 15.1 0.3 1.4 8.2 0.2 2.2 2 0 0 2 2 2 0 AAA-like domain AAA_29 PF13555.1 gi|313117261|ref|YP_004044244.1| - 0.014 14.8 0.6 0.028 13.9 0.4 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain SMC_N PF02463.14 gi|313117261|ref|YP_004044244.1| - 0.044 13.0 0.0 9.1 5.4 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain MMR_HSR1 PF01926.18 gi|313117261|ref|YP_004044244.1| - 0.053 13.4 0.2 0.77 9.7 0.1 2.2 1 1 0 1 1 1 0 50S ribosome-binding GTPase AAA_15 PF13175.1 gi|313117261|ref|YP_004044244.1| - 0.059 12.4 0.0 0.55 9.2 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain ABC2_membrane_2 PF12679.2 gi|313117262|ref|YP_004044245.1| - 1.9e-16 59.7 22.6 3.2e-16 59.0 15.7 1.4 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|313117262|ref|YP_004044245.1| - 6.6e-06 25.4 21.1 8.5e-06 25.0 14.6 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|313117262|ref|YP_004044245.1| - 0.0019 17.4 7.2 0.0035 16.6 5.0 1.5 1 1 0 1 1 1 1 ABC-2 family transporter protein Sarcoglycan_1 PF04790.8 gi|313117263|ref|YP_004044246.1| - 1.2e-06 27.8 0.1 0.24 10.5 0.0 4.4 1 1 3 6 6 6 2 Sarcoglycan complex subunit protein Glyco_hydro_65C PF03633.10 gi|313117263|ref|YP_004044246.1| - 7.5e-05 22.7 9.9 2.2 8.4 0.0 6.9 5 2 2 8 8 8 2 Glycosyl hydrolase family 65, C-terminal domain DUF4098 PF13345.1 gi|313117263|ref|YP_004044246.1| - 7.6e-05 22.5 30.6 0.12 12.2 0.8 6.5 1 1 4 5 5 5 2 Domain of unknown function (DUF4098) FecR PF04773.8 gi|313117263|ref|YP_004044246.1| - 0.00021 21.4 5.1 8.7 6.6 0.0 5.5 1 1 3 5 5 5 1 FecR protein HtaA PF04213.8 gi|313117263|ref|YP_004044246.1| - 0.00023 21.4 18.3 0.02 15.1 1.4 4.6 1 1 3 4 4 4 2 Htaa DUF2345 PF10106.4 gi|313117263|ref|YP_004044246.1| - 0.00028 20.5 0.0 0.82 9.2 0.0 3.1 2 2 1 3 3 3 2 Uncharacterized protein conserved in bacteria (DUF2345) DUF945 PF06097.6 gi|313117263|ref|YP_004044246.1| - 0.00033 19.5 14.5 0.072 11.8 1.8 2.9 1 1 2 3 3 3 2 Bacterial protein of unknown function (DUF945) DUF3581 PF12119.3 gi|313117263|ref|YP_004044246.1| - 0.0022 17.2 0.3 2.3 7.3 0.0 3.1 2 1 0 3 3 3 2 Protein of unknown function (DUF3581) YabP PF07873.6 gi|313117263|ref|YP_004044246.1| - 0.0033 16.9 0.9 22 4.6 0.0 5.0 5 2 1 6 6 6 0 YabP family NAGLU_N PF12971.2 gi|313117263|ref|YP_004044246.1| - 0.006 16.2 7.4 2.5 7.8 0.0 5.2 3 2 2 5 5 5 1 Alpha-N-acetylglucosaminidase (NAGLU) N-terminal domain DUF4097 PF13349.1 gi|313117263|ref|YP_004044246.1| - 0.0079 15.7 11.9 1.5 8.3 1.2 5.0 1 1 3 4 4 4 1 Domain of unknown function (DUF4097) DNA_pol3_beta PF00712.14 gi|313117263|ref|YP_004044246.1| - 0.01 15.7 4.6 3.3 7.6 0.1 4.6 3 3 2 5 5 5 0 DNA polymerase III beta subunit, N-terminal domain Ribosomal_L6 PF00347.18 gi|313117263|ref|YP_004044246.1| - 0.016 15.6 0.4 0.55 10.7 0.1 3.4 3 1 0 3 3 3 0 Ribosomal protein L6 LEA_2 PF03168.8 gi|313117263|ref|YP_004044246.1| - 0.022 15.1 0.0 61 4.0 0.0 4.3 2 2 3 5 5 5 0 Late embryogenesis abundant protein DUF108 PF01958.13 gi|313117263|ref|YP_004044246.1| - 0.036 14.3 0.1 26 5.1 0.0 4.2 2 2 2 4 4 4 0 Domain of unknown function DUF108 MORN_2 PF07661.8 gi|313117264|ref|YP_004044247.1| - 0.00011 21.8 0.0 42 4.6 0.0 5.3 5 0 0 5 5 5 1 MORN repeat variant zf-RING_3 PF14369.1 gi|313117264|ref|YP_004044247.1| - 0.029 14.3 0.2 0.07 13.1 0.2 1.7 1 0 0 1 1 1 0 zinc-finger Pterin_4a PF01329.14 gi|313117265|ref|YP_004044248.1| - 3e-29 100.6 0.5 3.5e-29 100.3 0.4 1.1 1 0 0 1 1 1 1 Pterin 4 alpha carbinolamine dehydratase COQ7 PF03232.8 gi|313117265|ref|YP_004044248.1| - 0.12 11.8 0.1 0.14 11.5 0.1 1.2 1 0 0 1 1 1 0 Ubiquinone biosynthesis protein COQ7 FAD-oxidase_C PF02913.14 gi|313117266|ref|YP_004044249.1| - 1.1e-57 195.2 0.8 2.1e-57 194.3 0.5 1.5 1 0 0 1 1 1 1 FAD linked oxidases, C-terminal domain FAD_binding_4 PF01565.18 gi|313117266|ref|YP_004044249.1| - 2.2e-37 127.6 0.6 6.5e-37 126.1 0.2 2.0 2 1 0 2 2 2 1 FAD binding domain Fer4_17 PF13534.1 gi|313117266|ref|YP_004044249.1| - 1.8e-09 37.8 4.8 3.2e-09 36.9 3.3 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|313117266|ref|YP_004044249.1| - 9.2e-09 35.2 5.5 1.9e-08 34.1 3.8 1.5 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|313117266|ref|YP_004044249.1| - 1.3e-06 28.7 2.3 9.9e-06 25.8 0.4 2.5 2 0 0 2 2 2 1 4Fe-4S dicluster domain CCG PF02754.11 gi|313117266|ref|YP_004044249.1| - 1e-05 25.4 0.0 0.0019 18.1 0.0 2.7 3 0 0 3 3 2 1 Cysteine-rich domain Fer4_7 PF12838.2 gi|313117266|ref|YP_004044249.1| - 0.00022 21.5 4.9 0.00049 20.4 3.4 1.6 1 0 0 1 1 1 1 4Fe-4S dicluster domain Fer4_2 PF12797.2 gi|313117266|ref|YP_004044249.1| - 0.0028 17.4 9.5 0.31 11.0 0.9 2.5 2 0 0 2 2 2 2 4Fe-4S binding domain Fer4_21 PF14697.1 gi|313117266|ref|YP_004044249.1| - 0.0031 17.3 3.4 0.068 13.0 0.2 2.4 2 0 0 2 2 2 1 4Fe-4S dicluster domain Fer4_10 PF13237.1 gi|313117266|ref|YP_004044249.1| - 0.0094 15.7 10.1 0.056 13.2 1.1 2.3 1 1 1 2 2 2 2 4Fe-4S dicluster domain Fer4 PF00037.22 gi|313117266|ref|YP_004044249.1| - 0.011 15.2 12.7 0.076 12.6 2.5 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_9 PF13187.1 gi|313117266|ref|YP_004044249.1| - 0.022 15.0 1.9 0.022 15.0 1.3 2.3 1 1 2 3 3 3 0 4Fe-4S dicluster domain Fer4_4 PF12800.2 gi|313117266|ref|YP_004044249.1| - 0.23 11.9 11.7 0.34 11.3 1.7 2.5 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_6 PF12837.2 gi|313117266|ref|YP_004044249.1| - 1.1 9.3 11.2 2.2 8.3 1.8 2.4 2 0 0 2 2 2 0 4Fe-4S binding domain Fer4_13 PF13370.1 gi|313117266|ref|YP_004044249.1| - 1.3 9.4 4.2 9.3 6.7 0.1 2.9 2 0 0 2 2 2 0 4Fe-4S single cluster domain Fer4_15 PF13459.1 gi|313117266|ref|YP_004044249.1| - 1.5 9.4 13.2 0.29 11.7 0.1 4.3 4 0 0 4 4 3 0 4Fe-4S single cluster domain Glyoxalase_2 PF12681.2 gi|313117267|ref|YP_004044250.1| - 4.5e-17 62.6 0.4 5.2e-17 62.4 0.3 1.0 1 0 0 1 1 1 1 Glyoxalase-like domain Glyoxalase PF00903.20 gi|313117267|ref|YP_004044250.1| - 2.9e-16 59.6 0.2 3.3e-16 59.4 0.2 1.1 1 0 0 1 1 1 1 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_4 PF13669.1 gi|313117267|ref|YP_004044250.1| - 1.3e-13 50.8 0.2 7.6e-11 41.9 0.1 2.0 1 1 1 2 2 2 2 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Glyoxalase_3 PF13468.1 gi|313117267|ref|YP_004044250.1| - 8.3e-05 22.5 0.1 0.009 15.9 0.0 2.1 1 1 0 1 1 1 1 Glyoxalase-like domain HpcH_HpaI PF03328.9 gi|313117268|ref|YP_004044251.1| - 7e-09 34.8 0.0 3e-08 32.8 0.0 2.0 1 1 0 1 1 1 1 HpcH/HpaI aldolase/citrate lyase family IclR PF01614.13 gi|313117269|ref|YP_004044252.1| - 4.2e-31 107.3 0.4 1.3e-30 105.7 0.1 1.8 2 0 0 2 2 2 1 Bacterial transcriptional regulator HTH_20 PF12840.2 gi|313117269|ref|YP_004044252.1| - 7.2e-07 28.9 0.0 1.9e-06 27.5 0.0 1.7 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|313117269|ref|YP_004044252.1| - 1.1e-05 24.8 0.3 3e-05 23.5 0.2 1.7 1 0 0 1 1 1 1 IclR helix-turn-helix domain HTH_5 PF01022.15 gi|313117269|ref|YP_004044252.1| - 6.2e-05 22.5 0.0 0.00013 21.5 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|313117269|ref|YP_004044252.1| - 0.00016 21.2 0.0 0.00037 20.1 0.0 1.6 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|313117269|ref|YP_004044252.1| - 0.00018 21.1 0.0 0.00041 19.9 0.0 1.7 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB MarR PF01047.17 gi|313117269|ref|YP_004044252.1| - 0.00033 20.2 0.1 0.0014 18.2 0.0 2.0 2 0 0 2 2 2 1 MarR family LexA_DNA_bind PF01726.11 gi|313117269|ref|YP_004044252.1| - 0.015 14.8 0.0 0.041 13.4 0.0 1.7 1 0 0 1 1 1 0 LexA DNA binding domain PadR PF03551.9 gi|313117269|ref|YP_004044252.1| - 0.023 14.4 0.6 0.053 13.2 0.0 1.9 2 0 0 2 2 2 0 Transcriptional regulator PadR-like family HTH_11 PF08279.7 gi|313117269|ref|YP_004044252.1| - 0.039 13.5 0.0 0.092 12.4 0.0 1.6 1 0 0 1 1 1 0 HTH domain Fe_dep_repress PF01325.14 gi|313117269|ref|YP_004044252.1| - 0.063 13.2 0.1 0.23 11.4 0.0 2.0 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain B-block_TFIIIC PF04182.7 gi|313117269|ref|YP_004044252.1| - 0.075 12.8 0.0 0.15 11.9 0.0 1.4 1 0 0 1 1 1 0 B-block binding subunit of TFIIIC HTH_34 PF13601.1 gi|313117269|ref|YP_004044252.1| - 0.11 12.5 0.0 0.22 11.5 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_24 PF13412.1 gi|313117269|ref|YP_004044252.1| - 0.11 11.8 0.0 0.2 11.0 0.0 1.5 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding TENA_THI-4 PF03070.11 gi|313117271|ref|YP_004044254.1| - 1e-51 175.7 0.0 1.2e-51 175.4 0.0 1.0 1 0 0 1 1 1 1 TENA/THI-4/PQQC family TENA_THI-4 PF03070.11 gi|313117272|ref|YP_004044255.1| - 8.6e-26 90.9 0.0 1.1e-25 90.6 0.0 1.1 1 0 0 1 1 1 1 TENA/THI-4/PQQC family SSF PF00474.12 gi|313117273|ref|YP_004044256.1| - 4e-31 108.0 29.0 5.3e-31 107.6 20.1 1.2 1 0 0 1 1 1 1 Sodium:solute symporter family TMEM191C PF15194.1 gi|313117273|ref|YP_004044256.1| - 0.073 12.9 0.4 0.073 12.9 0.3 2.6 2 1 0 2 2 2 0 TMEM191C family Nramp PF01566.13 gi|313117275|ref|YP_004044258.1| - 5e-63 213.0 36.6 5e-63 213.0 25.4 1.8 1 1 1 2 2 2 1 Natural resistance-associated macrophage protein UPF0278 PF08745.6 gi|313117277|ref|YP_004044260.1| - 1.9e-74 249.3 0.7 2.2e-74 249.1 0.5 1.0 1 0 0 1 1 1 1 UPF0278 family DUF4411 PF14367.1 gi|313117277|ref|YP_004044260.1| - 0.017 14.8 0.0 0.22 11.2 0.0 2.1 1 1 1 2 2 2 0 Domain of unknown function (DUF4411) DNA_ligase_A_M PF01068.16 gi|313117278|ref|YP_004044261.1| - 1.9e-12 46.9 0.0 4.5e-12 45.7 0.0 1.6 1 0 0 1 1 1 1 ATP dependent DNA ligase domain RNA_ligase PF09414.5 gi|313117278|ref|YP_004044261.1| - 0.0005 19.9 0.0 0.0029 17.4 0.0 2.0 1 1 0 1 1 1 1 RNA ligase DUF4185 PF13810.1 gi|313117278|ref|YP_004044261.1| - 0.077 11.8 0.0 0.12 11.2 0.0 1.2 1 0 0 1 1 1 0 Domain of unknown function (DUF4185) CBS PF00571.23 gi|313117279|ref|YP_004044262.1| - 2.1e-25 88.2 4.5 1.2e-12 47.3 0.1 2.2 2 0 0 2 2 2 2 CBS domain Na_H_Exchanger PF00999.16 gi|313117280|ref|YP_004044263.1| - 2e-33 115.5 43.7 2.6e-33 115.1 30.3 1.1 1 0 0 1 1 1 1 Sodium/hydrogen exchanger family TrkA_N PF02254.13 gi|313117280|ref|YP_004044263.1| - 6.7e-29 100.2 0.9 6.7e-29 100.2 0.6 2.0 2 0 0 2 2 2 1 TrkA-N domain TrkA_C PF02080.16 gi|313117280|ref|YP_004044263.1| - 1.1e-09 37.6 0.1 4.1e-09 35.8 0.1 2.0 1 0 0 1 1 1 1 TrkA-C domain NAD_binding_7 PF13241.1 gi|313117280|ref|YP_004044263.1| - 3.8e-06 27.0 0.2 8.3e-06 25.9 0.1 1.5 1 0 0 1 1 1 1 Putative NAD(P)-binding ApbA PF02558.11 gi|313117280|ref|YP_004044263.1| - 0.00054 19.4 0.1 0.0014 18.0 0.1 1.7 1 0 0 1 1 1 1 Ketopantoate reductase PanE/ApbA F420_oxidored PF03807.12 gi|313117280|ref|YP_004044263.1| - 0.0012 19.1 1.6 0.0022 18.4 0.2 2.2 2 0 0 2 2 2 1 NADP oxidoreductase coenzyme F420-dependent FAD_binding_3 PF01494.14 gi|313117280|ref|YP_004044263.1| - 0.002 17.2 0.1 0.0031 16.6 0.1 1.2 1 0 0 1 1 1 1 FAD binding domain UDPG_MGDP_dh_N PF03721.9 gi|313117280|ref|YP_004044263.1| - 0.0027 17.0 0.0 0.0055 16.1 0.0 1.5 1 0 0 1 1 1 1 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain XdhC_C PF13478.1 gi|313117280|ref|YP_004044263.1| - 0.0036 17.6 0.1 0.0077 16.5 0.1 1.5 1 0 0 1 1 1 1 XdhC Rossmann domain Saccharop_dh PF03435.13 gi|313117280|ref|YP_004044263.1| - 0.0055 15.7 0.2 0.01 14.8 0.2 1.5 1 0 0 1 1 1 1 Saccharopine dehydrogenase Lipase_GDSL_2 PF13472.1 gi|313117280|ref|YP_004044263.1| - 0.0087 16.2 0.3 4.2 7.4 0.0 2.4 2 0 0 2 2 2 2 GDSL-like Lipase/Acylhydrolase family NAD_Gly3P_dh_N PF01210.18 gi|313117280|ref|YP_004044263.1| - 0.014 15.1 0.6 0.076 12.7 0.0 2.4 2 1 0 2 2 2 0 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 2-Hacid_dh_C PF02826.14 gi|313117280|ref|YP_004044263.1| - 0.019 14.1 0.5 0.07 12.2 0.0 2.1 2 0 0 2 2 2 0 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain NAD_binding_2 PF03446.10 gi|313117280|ref|YP_004044263.1| - 0.026 14.3 0.1 0.056 13.2 0.1 1.5 1 0 0 1 1 1 0 NAD binding domain of 6-phosphogluconate dehydrogenase Usp PF00582.21 gi|313117281|ref|YP_004044264.1| - 1.5e-62 209.8 7.7 1e-31 110.0 1.7 2.0 2 0 0 2 2 2 2 Universal stress protein family DXP_reductoisom PF02670.11 gi|313117281|ref|YP_004044264.1| - 0.025 15.1 0.1 0.84 10.1 0.0 2.4 2 0 0 2 2 2 0 1-deoxy-D-xylulose 5-phosphate reductoisomerase FR47 PF08445.5 gi|313117281|ref|YP_004044264.1| - 0.19 11.4 1.2 8.6 6.2 0.0 2.7 3 0 0 3 3 3 0 FR47-like protein HTH_20 PF12840.2 gi|313117282|ref|YP_004044265.1| - 7.2e-10 38.5 0.2 1.1e-09 37.9 0.1 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_IclR PF09339.5 gi|313117282|ref|YP_004044265.1| - 7e-08 31.9 0.3 3.2e-07 29.8 0.2 2.1 2 1 0 2 2 2 1 IclR helix-turn-helix domain MarR_2 PF12802.2 gi|313117282|ref|YP_004044265.1| - 0.00054 19.5 0.2 0.00094 18.8 0.1 1.4 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|313117282|ref|YP_004044265.1| - 0.00074 19.1 0.0 0.0013 18.3 0.0 1.5 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|313117282|ref|YP_004044265.1| - 0.0021 17.4 0.0 0.0033 16.7 0.0 1.3 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|313117282|ref|YP_004044265.1| - 0.013 15.1 0.0 0.026 14.1 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory protein, arsR family ArsR PF09824.4 gi|313117282|ref|YP_004044265.1| - 0.025 13.8 0.0 0.032 13.5 0.0 1.1 1 0 0 1 1 1 0 ArsR transcriptional regulator FUR PF01475.14 gi|313117282|ref|YP_004044265.1| - 0.03 14.2 0.0 0.054 13.4 0.0 1.5 1 1 0 1 1 1 0 Ferric uptake regulator family DUF742 PF05331.6 gi|313117282|ref|YP_004044265.1| - 0.03 13.9 0.2 0.034 13.7 0.2 1.3 1 0 0 1 1 1 0 Protein of unknown function (DUF742) HTH_10 PF04967.7 gi|313117283|ref|YP_004044266.1| - 1.5e-21 75.7 0.2 2.3e-21 75.0 0.1 1.3 1 0 0 1 1 1 1 HTH DNA binding domain HTH_5 PF01022.15 gi|313117283|ref|YP_004044266.1| - 0.0017 17.9 0.0 0.0059 16.2 0.0 1.9 2 0 0 2 2 2 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|313117283|ref|YP_004044266.1| - 0.0069 16.0 0.0 0.014 15.0 0.0 1.6 1 0 0 1 1 1 1 MarR family GerE PF00196.14 gi|313117283|ref|YP_004044266.1| - 0.013 14.8 0.2 0.87 8.9 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family HTH_24 PF13412.1 gi|313117283|ref|YP_004044266.1| - 0.016 14.6 0.1 0.056 12.8 0.0 2.0 2 0 0 2 2 2 0 Winged helix-turn-helix DNA-binding HTH_20 PF12840.2 gi|313117283|ref|YP_004044266.1| - 0.026 14.3 0.0 0.055 13.2 0.0 1.6 1 0 0 1 1 1 0 Helix-turn-helix domain HTH_40 PF14493.1 gi|313117283|ref|YP_004044266.1| - 0.056 13.6 0.1 0.88 9.8 0.0 2.3 1 1 1 2 2 2 0 Helix-turn-helix domain MarR PF01047.17 gi|313117283|ref|YP_004044266.1| - 0.057 13.1 0.1 0.17 11.6 0.0 1.8 1 1 0 1 1 1 0 MarR family Homeobox PF00046.24 gi|313117283|ref|YP_004044266.1| - 0.089 12.4 0.1 0.22 11.1 0.0 1.6 2 0 0 2 2 2 0 Homeobox domain Fe_dep_repress PF01325.14 gi|313117283|ref|YP_004044266.1| - 0.094 12.6 0.0 0.16 11.9 0.0 1.4 1 0 0 1 1 1 0 Iron dependent repressor, N-terminal DNA binding domain Sigma70_r3 PF04539.11 gi|313117283|ref|YP_004044266.1| - 0.098 12.5 0.9 0.18 11.7 0.1 1.9 2 0 0 2 2 2 0 Sigma-70 region 3 HTH_27 PF13463.1 gi|313117283|ref|YP_004044266.1| - 0.12 12.6 0.1 0.36 11.1 0.0 1.8 2 0 0 2 2 2 0 Winged helix DNA-binding domain LexA_DNA_bind PF01726.11 gi|313117283|ref|YP_004044266.1| - 0.13 11.8 1.1 1.1 8.8 0.7 2.2 1 1 0 1 1 1 0 LexA DNA binding domain Zn-ribbon_8 PF09723.5 gi|313117284|ref|YP_004044267.1| - 0.00023 21.0 0.3 0.0003 20.6 0.2 1.2 1 0 0 1 1 1 1 Zinc ribbon domain Elf1 PF05129.8 gi|313117284|ref|YP_004044267.1| - 0.00085 18.9 0.2 0.00086 18.9 0.1 1.1 1 0 0 1 1 1 1 Transcription elongation factor Elf1 like zf-ribbon_3 PF13248.1 gi|313117284|ref|YP_004044267.1| - 0.017 14.2 0.8 0.6 9.3 0.1 2.1 2 0 0 2 2 2 0 zinc-ribbon domain DUF2387 PF09526.5 gi|313117284|ref|YP_004044267.1| - 0.019 14.8 0.2 0.024 14.5 0.1 1.2 1 0 0 1 1 1 0 Probable metal-binding protein (DUF2387) zf-Di19 PF05605.7 gi|313117284|ref|YP_004044267.1| - 0.21 11.7 1.2 1.9 8.6 0.8 2.0 1 1 0 1 1 1 0 Drought induced 19 protein (Di19), zinc-binding DUF2180 PF09947.4 gi|313117284|ref|YP_004044267.1| - 0.36 10.6 2.3 1.7 8.4 1.6 1.9 1 1 1 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2180) zf-HIT PF04438.11 gi|313117284|ref|YP_004044267.1| - 0.63 9.7 2.7 6.7 6.4 0.1 2.1 2 0 0 2 2 2 0 HIT zinc finger AA_permease_2 PF13520.1 gi|313117285|ref|YP_004044268.1| - 6.3e-42 143.5 36.0 7.6e-42 143.3 25.0 1.0 1 0 0 1 1 1 1 Amino acid permease AA_permease PF00324.16 gi|313117285|ref|YP_004044268.1| - 1.4e-37 129.2 36.4 1.7e-37 128.8 25.2 1.0 1 0 0 1 1 1 1 Amino acid permease Usp PF00582.21 gi|313117286|ref|YP_004044269.1| - 3.6e-11 43.4 8.8 2.6e-08 34.1 2.2 2.2 2 0 0 2 2 2 2 Universal stress protein family Copper-bind PF00127.15 gi|313117287|ref|YP_004044270.1| - 4.3e-19 68.5 0.1 1.1e-18 67.2 0.0 1.6 1 1 0 1 1 1 1 Copper binding proteins, plastocyanin/azurin family Cupredoxin_1 PF13473.1 gi|313117287|ref|YP_004044270.1| - 6.7e-05 22.7 0.0 0.038 13.8 0.0 2.2 2 0 0 2 2 2 2 Cupredoxin-like domain Na_Ca_ex PF01699.19 gi|313117288|ref|YP_004044271.1| - 6e-35 119.8 26.7 1.7e-21 76.2 7.0 2.1 2 0 0 2 2 2 2 Sodium/calcium exchanger protein DUF4131 PF13567.1 gi|313117288|ref|YP_004044271.1| - 0.11 11.9 2.1 11 5.3 0.7 3.2 2 1 1 3 3 3 0 Domain of unknown function (DUF4131) CBS PF00571.23 gi|313117289|ref|YP_004044272.1| - 1.3e-36 124.1 19.4 1.5e-12 47.1 0.7 4.8 5 0 0 5 5 5 4 CBS domain GATase PF00117.23 gi|313117290|ref|YP_004044273.1| - 8.8e-22 77.4 0.0 1.1e-21 77.2 0.0 1.1 1 0 0 1 1 1 1 Glutamine amidotransferase class-I Peptidase_C26 PF07722.8 gi|313117290|ref|YP_004044273.1| - 7.5e-06 25.5 0.0 3.2e-05 23.4 0.0 2.1 1 1 0 1 1 1 1 Peptidase C26 HTS PF04204.11 gi|313117290|ref|YP_004044273.1| - 0.0026 16.5 0.0 0.0048 15.6 0.0 1.4 1 1 0 1 1 1 1 Homoserine O-succinyltransferase GATase_3 PF07685.9 gi|313117290|ref|YP_004044273.1| - 0.025 14.1 0.0 0.042 13.4 0.0 1.6 1 1 0 1 1 1 0 CobB/CobQ-like glutamine amidotransferase domain Oxidored_q2 PF00420.19 gi|313117291|ref|YP_004044274.1| - 1.1 8.9 6.8 5 6.7 4.5 1.9 1 1 0 1 1 1 0 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DUF2583 PF10762.4 gi|313117291|ref|YP_004044274.1| - 2.9 8.0 5.0 2 8.5 1.5 1.9 1 1 1 2 2 2 0 Protein of unknown function (DUF2583) Ion_trans_2 PF07885.11 gi|313117291|ref|YP_004044274.1| - 4.8 6.9 12.0 1.2e+02 2.4 0.0 3.1 2 1 0 2 2 2 0 Ion channel UPF0047 PF01894.12 gi|313117292|ref|YP_004044275.1| - 2.4e-39 133.7 0.0 2.7e-39 133.6 0.0 1.0 1 0 0 1 1 1 1 Uncharacterised protein family UPF0047 Usp PF00582.21 gi|313117293|ref|YP_004044276.1| - 3.3e-27 95.3 0.6 3.8e-27 95.1 0.4 1.0 1 0 0 1 1 1 1 Universal stress protein family TPR_12 PF13424.1 gi|313117293|ref|YP_004044276.1| - 0.045 13.6 0.0 0.27 11.1 0.0 2.0 2 0 0 2 2 2 0 Tetratricopeptide repeat E1-E2_ATPase PF00122.15 gi|313117295|ref|YP_004044278.1| - 1.6e-44 151.6 0.2 4.1e-44 150.3 0.1 1.7 1 0 0 1 1 1 1 E1-E2 ATPase Hydrolase PF00702.21 gi|313117295|ref|YP_004044278.1| - 4.7e-37 128.4 3.6 4.7e-37 128.4 2.5 1.8 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase HMA PF00403.21 gi|313117295|ref|YP_004044278.1| - 7.8e-09 35.5 0.0 2.5e-08 33.9 0.0 1.9 2 0 0 2 2 2 1 Heavy-metal-associated domain HAD PF12710.2 gi|313117295|ref|YP_004044278.1| - 1e-08 35.5 0.0 2.2e-08 34.5 0.0 1.6 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_3 PF08282.7 gi|313117295|ref|YP_004044278.1| - 0.0021 17.6 0.1 0.0034 16.9 0.0 1.2 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase ATPase-cat_bd PF12156.3 gi|313117295|ref|YP_004044278.1| - 0.018 15.5 0.1 0.063 13.8 0.1 1.9 2 0 0 2 2 2 0 Putative metal-binding domain of cation transport ATPase HCV_NS4a PF01006.15 gi|313117295|ref|YP_004044278.1| - 0.028 13.9 4.0 0.05 13.1 1.2 2.7 2 0 0 2 2 2 0 Hepatitis C virus non-structural protein NS4a DsbD_2 PF13386.1 gi|313117296|ref|YP_004044279.1| - 1.9e-41 142.0 14.3 2.2e-41 141.7 9.9 1.0 1 0 0 1 1 1 1 Cytochrome C biogenesis protein transmembrane region Oxidored_q5_N PF01059.12 gi|313117297|ref|YP_004044280.1| - 0.055 13.3 0.1 0.061 13.2 0.1 1.0 1 0 0 1 1 1 0 NADH-ubiquinone oxidoreductase chain 4, amino terminus PepSY_TM_1 PF13172.1 gi|313117297|ref|YP_004044280.1| - 6.8 6.5 7.0 4.5 7.1 0.3 2.3 2 0 0 2 2 2 0 PepSY-associated TM helix COX2 PF00116.15 gi|313117299|ref|YP_004044282.1| - 1.2e-23 83.2 0.1 1.5e-23 82.8 0.1 1.2 1 0 0 1 1 1 1 Cytochrome C oxidase subunit II, periplasmic domain Cupredoxin_1 PF13473.1 gi|313117299|ref|YP_004044282.1| - 0.0081 16.0 0.0 0.012 15.4 0.0 1.4 1 0 0 1 1 1 1 Cupredoxin-like domain COX2-transmemb PF09125.5 gi|313117299|ref|YP_004044282.1| - 0.018 14.6 0.6 0.032 13.7 0.4 1.4 1 0 0 1 1 1 0 Cytochrome C oxidase subunit II, transmembrane COX1 PF00115.15 gi|313117300|ref|YP_004044283.1| - 3.1e-72 243.6 55.1 3.1e-72 243.6 38.2 1.9 1 1 1 2 2 2 2 Cytochrome C and Quinol oxidase polypeptide I BacA PF02673.13 gi|313117303|ref|YP_004044286.1| - 0.0074 15.5 0.8 0.0074 15.5 0.5 1.0 1 0 0 1 1 1 1 Bacitracin resistance protein BacA PsbN PF02468.10 gi|313117303|ref|YP_004044286.1| - 1.4 8.5 5.3 13 5.5 0.2 2.2 2 0 0 2 2 2 0 Photosystem II reaction centre N protein (psbN) PGPGW PF09656.5 gi|313117303|ref|YP_004044286.1| - 4.6 6.6 7.3 0.94 8.8 0.9 2.0 1 1 1 2 2 2 0 Putative transmembrane protein (PGPGW) SNARE_assoc PF09335.6 gi|313117304|ref|YP_004044287.1| - 9e-24 84.0 5.2 9e-24 84.0 3.6 2.6 2 2 0 2 2 2 1 SNARE associated Golgi protein CD20 PF04103.10 gi|313117304|ref|YP_004044287.1| - 0.29 11.0 6.7 0.04 13.8 1.5 1.8 2 0 0 2 2 2 0 CD20-like family DUF4191 PF13829.1 gi|313117304|ref|YP_004044287.1| - 1.3 8.0 7.4 0.98 8.4 0.9 2.4 1 1 1 2 2 2 0 Domain of unknown function (DUF4191) GtrA PF04138.9 gi|313117304|ref|YP_004044287.1| - 2.8 7.9 17.1 2.7 7.9 3.6 3.4 2 1 1 3 3 3 0 GtrA-like protein Bacteriocin_IIc PF10439.4 gi|313117304|ref|YP_004044287.1| - 2.8 8.1 6.4 4 7.6 0.9 2.3 2 0 0 2 2 2 0 Bacteriocin class II with double-glycine leader peptide MCPsignal PF00015.16 gi|313117305|ref|YP_004044288.1| - 7.7e-49 166.1 40.3 7.7e-49 166.1 27.9 3.6 2 1 2 4 4 4 3 Methyl-accepting chemotaxis protein (MCP) signalling domain HAMP PF00672.20 gi|313117305|ref|YP_004044288.1| - 3.5e-17 62.3 0.3 3.5e-17 62.3 0.2 5.1 3 1 1 4 4 4 1 HAMP domain Cache_1 PF02743.13 gi|313117305|ref|YP_004044288.1| - 1.7e-14 53.1 1.0 5.3e-09 35.5 0.1 3.7 3 0 0 3 3 3 2 Cache domain AAA_27 PF13514.1 gi|313117305|ref|YP_004044288.1| - 0.00084 17.1 34.7 0.00084 17.1 24.0 1.8 2 1 0 2 2 2 1 AAA domain Laminin_II PF06009.7 gi|313117305|ref|YP_004044288.1| - 0.01 15.6 4.4 0.01 15.6 3.0 4.8 2 2 2 4 4 4 0 Laminin Domain II COG2 PF06148.6 gi|313117305|ref|YP_004044288.1| - 0.22 11.3 27.0 0.077 12.8 0.2 5.2 4 1 1 5 5 5 0 COG (conserved oligomeric Golgi) complex component, COG2 Laminin_I PF06008.9 gi|313117305|ref|YP_004044288.1| - 0.44 9.8 38.5 0.3 10.3 17.6 3.6 1 1 1 2 2 2 0 Laminin Domain I CorA PF01544.13 gi|313117305|ref|YP_004044288.1| - 0.48 9.4 23.0 3 6.7 0.5 4.2 1 1 2 4 4 4 0 CorA-like Mg2+ transporter protein GAS PF13851.1 gi|313117305|ref|YP_004044288.1| - 1.1 8.4 25.5 0.6 9.2 7.9 3.7 2 1 0 3 3 3 0 Growth-arrest specific micro-tubule binding DUF21 PF01595.15 gi|313117306|ref|YP_004044289.1| - 2.4e-29 101.9 0.3 3.5e-29 101.4 0.2 1.2 1 0 0 1 1 1 1 Domain of unknown function DUF21 CBS PF00571.23 gi|313117306|ref|YP_004044289.1| - 9.1e-14 50.9 0.9 4.9e-07 29.4 0.0 2.4 2 0 0 2 2 2 2 CBS domain Pribosyltran PF00156.22 gi|313117307|ref|YP_004044290.1| - 2.8e-27 94.9 0.2 4.2e-27 94.3 0.1 1.2 1 0 0 1 1 1 1 Phosphoribosyl transferase domain PRTase_2 PF15609.1 gi|313117307|ref|YP_004044290.1| - 0.00047 19.5 0.0 0.0095 15.2 0.0 2.1 2 0 0 2 2 2 1 Phosphoribosyl transferase UPRTase PF14681.1 gi|313117307|ref|YP_004044290.1| - 0.00053 19.2 0.0 0.00081 18.6 0.0 1.5 1 1 0 1 1 1 1 Uracil phosphoribosyltransferase Abhydrolase_5 PF12695.2 gi|313117308|ref|YP_004044291.1| - 1.3e-19 70.3 0.2 1.6e-19 70.1 0.1 1.1 1 0 0 1 1 1 1 Alpha/beta hydrolase family Abhydrolase_6 PF12697.2 gi|313117308|ref|YP_004044291.1| - 2.1e-13 50.6 1.7 2.8e-06 27.3 0.4 2.1 1 1 1 2 2 2 2 Alpha/beta hydrolase family DLH PF01738.13 gi|313117308|ref|YP_004044291.1| - 1e-07 31.4 0.0 1.6e-07 30.8 0.0 1.2 1 0 0 1 1 1 1 Dienelactone hydrolase family Peptidase_S9 PF00326.16 gi|313117308|ref|YP_004044291.1| - 3.3e-05 23.1 0.5 0.15 11.2 0.1 2.9 2 1 1 3 3 3 2 Prolyl oligopeptidase family Abhydrolase_1 PF00561.15 gi|313117308|ref|YP_004044291.1| - 0.00013 21.5 0.0 0.0043 16.6 0.0 2.1 1 1 1 2 2 2 1 alpha/beta hydrolase fold BAAT_C PF08840.6 gi|313117308|ref|YP_004044291.1| - 0.00016 21.4 0.0 0.067 12.8 0.0 2.1 1 1 1 2 2 2 2 BAAT / Acyl-CoA thioester hydrolase C terminal Peptidase_S15 PF02129.13 gi|313117308|ref|YP_004044291.1| - 0.00032 20.2 0.0 0.0037 16.7 0.0 2.0 1 1 1 2 2 2 1 X-Pro dipeptidyl-peptidase (S15 family) Abhydrolase_2 PF02230.11 gi|313117308|ref|YP_004044291.1| - 0.013 14.9 0.0 1.5 8.1 0.0 2.1 2 0 0 2 2 2 0 Phospholipase/Carboxylesterase PAF-AH_p_II PF03403.8 gi|313117308|ref|YP_004044291.1| - 0.11 10.7 0.0 6.5 4.9 0.0 2.0 2 0 0 2 2 2 0 Platelet-activating factor acetylhydrolase, isoform II SBP_bac_8 PF13416.1 gi|313117309|ref|YP_004044292.1| - 3.5e-50 171.3 13.2 4.4e-50 171.0 8.9 1.3 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|313117309|ref|YP_004044292.1| - 5e-30 105.3 11.2 7.2e-30 104.7 7.8 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_6 PF13343.1 gi|313117309|ref|YP_004044292.1| - 0.00016 21.0 0.1 0.049 12.9 0.0 2.2 2 0 0 2 2 2 2 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|313117309|ref|YP_004044292.1| - 0.01 15.5 1.2 1.3 8.6 0.1 2.6 2 1 0 2 2 2 0 Bacterial extracellular solute-binding protein TAT_signal PF10518.4 gi|313117309|ref|YP_004044292.1| - 0.041 13.8 0.0 0.15 12.1 0.0 1.9 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence FmdE PF02663.9 gi|313117309|ref|YP_004044292.1| - 0.14 12.0 0.2 0.48 10.3 0.0 1.9 2 0 0 2 2 2 0 FmdE, Molybdenum formylmethanofuran dehydrogenase operon BPD_transp_1 PF00528.17 gi|313117310|ref|YP_004044293.1| - 2.4e-13 50.0 13.5 2.4e-13 50.0 9.3 2.4 2 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component BPD_transp_1 PF00528.17 gi|313117311|ref|YP_004044294.1| - 6.3e-17 61.6 17.3 6.3e-17 61.6 12.0 1.9 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component DDE_Tnp_IS66_C PF13817.1 gi|313117311|ref|YP_004044294.1| - 0.12 12.3 0.0 0.7 9.9 0.0 2.0 2 0 0 2 2 2 0 IS66 C-terminal element ABC_tran PF00005.22 gi|313117312|ref|YP_004044295.1| - 8.1e-33 113.6 0.0 1.3e-32 112.9 0.0 1.3 1 0 0 1 1 1 1 ABC transporter TOBE_2 PF08402.5 gi|313117312|ref|YP_004044295.1| - 6.2e-11 42.1 0.5 9.1e-10 38.4 0.1 2.4 2 0 0 2 2 2 1 TOBE domain AAA_21 PF13304.1 gi|313117312|ref|YP_004044295.1| - 5.5e-08 33.1 0.0 0.006 16.5 0.0 2.1 1 1 0 2 2 2 2 AAA domain TOBE PF03459.12 gi|313117312|ref|YP_004044295.1| - 7.4e-05 22.7 0.4 0.021 14.8 0.1 3.5 3 0 0 3 3 3 1 TOBE domain AAA_22 PF13401.1 gi|313117312|ref|YP_004044295.1| - 0.00078 19.5 0.1 0.0017 18.4 0.1 1.7 1 1 0 1 1 1 1 AAA domain Rad17 PF03215.10 gi|313117312|ref|YP_004044295.1| - 0.0016 17.2 0.0 0.0024 16.6 0.0 1.1 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein AAA_33 PF13671.1 gi|313117312|ref|YP_004044295.1| - 0.0016 18.3 0.0 0.0039 17.0 0.0 1.8 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|313117312|ref|YP_004044295.1| - 0.002 17.3 0.0 0.0032 16.6 0.0 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_16 PF13191.1 gi|313117312|ref|YP_004044295.1| - 0.0027 17.7 1.4 0.004 17.1 0.2 2.0 2 1 0 2 2 2 1 AAA ATPase domain SMC_N PF02463.14 gi|313117312|ref|YP_004044295.1| - 0.0032 16.7 0.0 0.031 13.5 0.0 2.0 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain AAA_25 PF13481.1 gi|313117312|ref|YP_004044295.1| - 0.011 15.1 0.0 0.023 14.1 0.0 1.5 1 0 0 1 1 1 0 AAA domain Mg_chelatase PF01078.16 gi|313117312|ref|YP_004044295.1| - 0.016 14.3 0.0 0.042 13.0 0.0 1.7 2 0 0 2 2 2 0 Magnesium chelatase, subunit ChlI AAA_29 PF13555.1 gi|313117312|ref|YP_004044295.1| - 0.017 14.6 0.0 0.034 13.6 0.0 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain AAA PF00004.24 gi|313117312|ref|YP_004044295.1| - 0.037 14.2 0.0 0.076 13.2 0.0 1.5 1 0 0 1 1 1 0 ATPase family associated with various cellular activities (AAA) AAA_10 PF12846.2 gi|313117312|ref|YP_004044295.1| - 0.047 13.1 0.1 0.094 12.1 0.1 1.4 1 1 0 1 1 1 0 AAA-like domain AAA_17 PF13207.1 gi|313117312|ref|YP_004044295.1| - 0.072 13.9 0.5 0.18 12.6 0.4 1.9 1 1 0 1 1 1 0 AAA domain AAA_5 PF07728.9 gi|313117312|ref|YP_004044295.1| - 0.091 12.4 0.4 0.4 10.4 0.1 2.1 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) Miro PF08477.8 gi|313117312|ref|YP_004044295.1| - 0.097 13.1 0.0 1.3 9.4 0.0 2.4 2 0 0 2 2 2 0 Miro-like protein NACHT PF05729.7 gi|313117312|ref|YP_004044295.1| - 0.14 11.8 0.3 0.34 10.5 0.1 1.7 2 0 0 2 2 2 0 NACHT domain AAA_23 PF13476.1 gi|313117312|ref|YP_004044295.1| - 0.16 12.3 0.0 0.25 11.6 0.0 1.3 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|313117312|ref|YP_004044295.1| - 0.16 11.8 0.0 0.3 11.0 0.0 1.4 1 0 0 1 1 1 0 AAA domain AAA_15 PF13175.1 gi|313117312|ref|YP_004044295.1| - 0.16 10.9 0.0 2.1 7.2 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain Lipase_chap PF03280.9 gi|313117315|ref|YP_004044298.1| - 0.0051 16.3 0.4 0.4 10.1 0.1 2.1 2 0 0 2 2 2 2 Proteobacterial lipase chaperone protein Peripla_BP_2 PF01497.13 gi|313117316|ref|YP_004044299.1| - 1.9e-13 50.0 0.0 6.1e-13 48.4 0.0 1.7 1 1 1 2 2 2 1 Periplasmic binding protein Glyco_hyd_65N_2 PF14498.1 gi|313117316|ref|YP_004044299.1| - 0.046 13.4 0.0 0.064 12.9 0.0 1.2 1 0 0 1 1 1 0 Glycosyl hydrolase family 65, N-terminal domain HEAT_2 PF13646.1 gi|313117317|ref|YP_004044300.1| - 5.8e-15 55.3 13.7 4.7e-07 30.0 0.8 3.6 1 1 2 3 3 3 3 HEAT repeats HEAT PF02985.17 gi|313117317|ref|YP_004044300.1| - 1.6e-09 36.9 3.9 0.04 13.9 0.0 5.3 5 0 0 5 5 5 3 HEAT repeat HEAT_EZ PF13513.1 gi|313117317|ref|YP_004044300.1| - 3.4e-09 36.9 20.7 0.0055 17.1 0.1 5.3 2 1 4 6 6 6 4 HEAT-like repeat Adaptin_N PF01602.15 gi|313117317|ref|YP_004044300.1| - 0.00022 19.6 0.0 0.31 9.3 0.0 2.3 1 1 1 3 3 3 3 Adaptin N terminal region DZR PF12773.2 gi|313117317|ref|YP_004044300.1| - 0.00087 19.0 0.8 0.0017 18.1 0.6 1.4 1 0 0 1 1 1 1 Double zinc ribbon Cnd1 PF12717.2 gi|313117317|ref|YP_004044300.1| - 0.0056 16.5 0.0 1.4 8.7 0.0 2.6 2 2 1 3 3 3 1 non-SMC mitotic condensation complex subunit 1 zf-ribbon_3 PF13248.1 gi|313117317|ref|YP_004044300.1| - 0.015 14.4 5.5 0.042 13.0 3.8 1.8 1 0 0 1 1 1 0 zinc-ribbon domain zinc_ribbon_2 PF13240.1 gi|313117317|ref|YP_004044300.1| - 0.019 14.4 6.4 0.022 14.2 3.4 1.9 2 0 0 2 2 2 0 zinc-ribbon domain Prok-RING_1 PF14446.1 gi|313117317|ref|YP_004044300.1| - 0.02 14.6 0.4 0.039 13.6 0.2 1.5 1 0 0 1 1 1 0 Prokaryotic RING finger family 1 HEAT_PBS PF03130.11 gi|313117317|ref|YP_004044300.1| - 0.11 13.0 12.9 6.3 7.5 0.8 4.9 4 1 0 4 4 4 0 PBS lyase HEAT-like repeat Cdc6_C PF09079.6 gi|313117318|ref|YP_004044301.1| - 7.7e-16 57.5 0.2 2.4e-15 56.0 0.0 2.0 2 0 0 2 2 1 1 CDC6, C terminal AAA_22 PF13401.1 gi|313117318|ref|YP_004044301.1| - 1.4e-10 41.3 0.0 3.3e-10 40.1 0.0 1.5 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|313117318|ref|YP_004044301.1| - 8.2e-10 38.9 0.3 6e-09 36.1 0.0 2.4 2 1 0 2 2 2 1 AAA ATPase domain NB-ARC PF00931.17 gi|313117318|ref|YP_004044301.1| - 0.0003 19.7 0.0 0.00046 19.1 0.0 1.3 1 0 0 1 1 1 1 NB-ARC domain Arch_ATPase PF01637.13 gi|313117318|ref|YP_004044301.1| - 0.00034 20.4 0.0 0.00054 19.7 0.0 1.4 1 0 0 1 1 1 1 Archaeal ATPase AAA PF00004.24 gi|313117318|ref|YP_004044301.1| - 0.0024 18.0 0.0 0.0084 16.3 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_32 PF13654.1 gi|313117318|ref|YP_004044301.1| - 0.0034 16.0 0.2 0.092 11.3 0.0 2.1 2 0 0 2 2 2 1 AAA domain RNA_helicase PF00910.17 gi|313117318|ref|YP_004044301.1| - 0.0035 17.4 0.0 0.0073 16.4 0.0 1.5 1 0 0 1 1 1 1 RNA helicase T2SE PF00437.15 gi|313117318|ref|YP_004044301.1| - 0.0076 15.1 0.0 0.014 14.3 0.0 1.4 1 0 0 1 1 1 1 Type II/IV secretion system protein DEAD PF00270.24 gi|313117318|ref|YP_004044301.1| - 0.019 14.4 0.3 0.67 9.4 0.0 2.2 1 1 0 2 2 2 0 DEAD/DEAH box helicase PIF1 PF05970.9 gi|313117318|ref|YP_004044301.1| - 0.02 13.8 0.0 0.042 12.7 0.0 1.4 2 0 0 2 2 2 0 PIF1-like helicase AAA_24 PF13479.1 gi|313117318|ref|YP_004044301.1| - 0.026 14.1 0.0 0.042 13.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain Sigma54_activat PF00158.21 gi|313117318|ref|YP_004044301.1| - 0.036 13.5 0.1 0.077 12.4 0.0 1.6 2 0 0 2 2 1 0 Sigma-54 interaction domain NACHT PF05729.7 gi|313117318|ref|YP_004044301.1| - 0.037 13.6 0.0 0.08 12.5 0.0 1.5 1 1 0 1 1 1 0 NACHT domain Kinesin PF00225.18 gi|313117318|ref|YP_004044301.1| - 0.043 12.5 0.0 0.066 11.9 0.0 1.3 1 0 0 1 1 1 0 Kinesin motor domain DUF258 PF03193.11 gi|313117318|ref|YP_004044301.1| - 0.044 12.9 0.0 0.11 11.7 0.0 1.6 1 0 0 1 1 1 0 Protein of unknown function, DUF258 KAP_NTPase PF07693.9 gi|313117318|ref|YP_004044301.1| - 0.044 12.7 0.0 0.29 10.0 0.0 1.9 1 1 1 2 2 2 0 KAP family P-loop domain AAA_10 PF12846.2 gi|313117318|ref|YP_004044301.1| - 0.045 13.1 0.6 0.19 11.1 0.5 2.2 1 1 0 1 1 1 0 AAA-like domain TrwB_AAD_bind PF10412.4 gi|313117318|ref|YP_004044301.1| - 0.065 11.8 0.0 0.74 8.3 0.0 2.1 2 0 0 2 2 2 0 Type IV secretion-system coupling protein DNA-binding domain DUF3987 PF13148.1 gi|313117318|ref|YP_004044301.1| - 0.086 11.3 0.0 0.31 9.5 0.0 1.8 1 1 0 1 1 1 0 Protein of unknown function (DUF3987) AAA_5 PF07728.9 gi|313117318|ref|YP_004044301.1| - 0.092 12.4 0.0 0.43 10.2 0.0 2.1 2 1 0 2 2 2 0 AAA domain (dynein-related subfamily) Bac_DnaA PF00308.13 gi|313117318|ref|YP_004044301.1| - 0.11 12.0 0.0 0.35 10.4 0.0 1.9 2 1 0 2 2 2 0 Bacterial dnaA protein AFOR_C PF01314.13 gi|313117319|ref|YP_004044302.1| - 2.3e-75 253.6 0.5 9.8e-75 251.6 0.4 1.9 1 1 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 AFOR_N PF02730.10 gi|313117319|ref|YP_004044302.1| - 2.5e-55 186.9 0.1 4.3e-55 186.2 0.1 1.3 1 0 0 1 1 1 1 Aldehyde ferredoxin oxidoreductase, N-terminal domain SBP_bac_6 PF13343.1 gi|313117320|ref|YP_004044303.1| - 9e-22 77.5 0.0 1.4e-21 76.8 0.0 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_8 PF13416.1 gi|313117320|ref|YP_004044303.1| - 8.8e-19 68.3 0.7 1.3e-18 67.7 0.5 1.2 1 0 0 1 1 1 1 Bacterial extracellular solute-binding protein SBP_bac_1 PF01547.20 gi|313117320|ref|YP_004044303.1| - 8.1e-15 55.3 3.3 8.4e-15 55.3 0.8 1.8 1 1 1 2 2 2 1 Bacterial extracellular solute-binding protein SBP_bac_11 PF13531.1 gi|313117320|ref|YP_004044303.1| - 5.2e-11 42.6 0.0 9.7e-11 41.7 0.0 1.4 1 1 0 1 1 1 1 Bacterial extracellular solute-binding protein BPD_transp_1 PF00528.17 gi|313117321|ref|YP_004044304.1| - 6.5e-11 42.0 15.5 1.1e-10 41.3 10.7 1.4 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component PepSY_TM PF03929.11 gi|313117321|ref|YP_004044304.1| - 0.15 12.5 0.0 0.15 12.5 0.0 4.3 5 0 0 5 5 5 0 PepSY-associated TM helix BPD_transp_1 PF00528.17 gi|313117322|ref|YP_004044305.1| - 3.4e-09 36.4 11.7 3.4e-09 36.4 8.1 2.2 1 1 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component Ycf9 PF01737.12 gi|313117322|ref|YP_004044305.1| - 0.023 14.1 0.1 0.023 14.1 0.1 2.8 3 0 0 3 3 3 0 YCF9 Chordopox_L2 PF05803.7 gi|313117322|ref|YP_004044305.1| - 0.13 11.8 0.3 0.26 10.9 0.2 1.4 1 0 0 1 1 1 0 Chordopoxvirus L2 protein ABC_tran PF00005.22 gi|313117323|ref|YP_004044306.1| - 6e-37 126.9 0.0 8.1e-37 126.5 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|313117323|ref|YP_004044306.1| - 1.1e-10 41.9 0.0 5.7e-06 26.5 0.0 2.1 1 1 0 2 2 2 2 AAA domain AAA_15 PF13175.1 gi|313117323|ref|YP_004044306.1| - 0.00046 19.3 0.0 0.039 13.0 0.0 2.1 2 0 0 2 2 2 1 AAA ATPase domain Rad17 PF03215.10 gi|313117323|ref|YP_004044306.1| - 0.0027 16.4 0.0 0.0038 15.9 0.0 1.1 1 0 0 1 1 1 1 Rad17 cell cycle checkpoint protein SMC_N PF02463.14 gi|313117323|ref|YP_004044306.1| - 0.012 14.8 0.4 0.7 9.0 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_22 PF13401.1 gi|313117323|ref|YP_004044306.1| - 0.014 15.5 0.3 0.063 13.4 0.1 1.9 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|313117323|ref|YP_004044306.1| - 0.024 14.5 0.0 0.048 13.5 0.0 1.5 1 0 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|313117323|ref|YP_004044306.1| - 0.025 14.5 2.6 0.055 13.4 0.2 2.2 2 1 0 2 2 2 0 AAA ATPase domain NB-ARC PF00931.17 gi|313117323|ref|YP_004044306.1| - 0.033 13.0 0.2 0.056 12.2 0.1 1.3 1 0 0 1 1 1 0 NB-ARC domain AAA_33 PF13671.1 gi|313117323|ref|YP_004044306.1| - 0.054 13.3 0.0 0.83 9.5 0.0 2.3 2 0 0 2 2 2 0 AAA domain PRK PF00485.13 gi|313117323|ref|YP_004044306.1| - 0.057 12.9 0.3 0.097 12.2 0.2 1.3 1 0 0 1 1 1 0 Phosphoribulokinase / Uridine kinase family SbcCD_C PF13558.1 gi|313117323|ref|YP_004044306.1| - 0.068 13.1 0.2 0.72 9.8 0.1 2.2 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_25 PF13481.1 gi|313117323|ref|YP_004044306.1| - 0.11 11.8 0.0 0.23 10.8 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA PF00004.24 gi|313117323|ref|YP_004044306.1| - 0.11 12.6 1.5 0.91 9.7 0.7 2.2 2 0 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_17 PF13207.1 gi|313117323|ref|YP_004044306.1| - 0.12 13.1 2.3 0.32 11.8 1.1 1.9 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.1 gi|313117323|ref|YP_004044306.1| - 0.18 11.3 0.3 0.34 10.4 0.2 1.4 1 0 0 1 1 1 0 P-loop containing region of AAA domain MobB PF03205.9 gi|313117323|ref|YP_004044306.1| - 0.19 11.4 0.5 0.33 10.6 0.4 1.3 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_23 PF13476.1 gi|313117323|ref|YP_004044306.1| - 0.24 11.6 1.0 0.39 10.9 0.7 1.3 1 0 0 1 1 1 0 AAA domain PQQ_2 PF13360.1 gi|313117324|ref|YP_004044307.1| - 2e-39 135.4 12.8 4.7e-21 75.3 3.0 3.1 1 1 1 2 2 2 2 PQQ-like domain PQQ PF01011.16 gi|313117324|ref|YP_004044307.1| - 6.6e-22 75.8 8.3 0.0015 17.9 0.1 7.0 7 0 0 7 7 7 5 PQQ enzyme repeat PQQ_3 PF13570.1 gi|313117324|ref|YP_004044307.1| - 3e-20 71.8 27.9 0.0022 18.2 0.0 8.8 8 1 0 8 8 8 6 PQQ-like domain ABC2_membrane_2 PF12679.2 gi|313117326|ref|YP_004044309.1| - 1.8e-14 53.2 1.4 5.7e-14 51.6 0.9 1.7 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|313117326|ref|YP_004044309.1| - 6.6e-12 45.0 3.0 6.6e-12 45.0 2.1 1.8 2 0 0 2 2 2 1 ABC-2 family transporter protein Ycf4 PF02392.11 gi|313117326|ref|YP_004044309.1| - 0.021 14.1 0.6 0.039 13.2 0.4 1.4 1 0 0 1 1 1 0 Ycf4 ABC_tran PF00005.22 gi|313117327|ref|YP_004044310.1| - 8.8e-28 97.3 0.0 2.3e-27 95.9 0.0 1.6 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|313117327|ref|YP_004044310.1| - 1e-11 45.3 0.0 4.1e-07 30.2 0.0 2.3 1 1 1 2 2 2 2 AAA domain DUF4162 PF13732.1 gi|313117327|ref|YP_004044310.1| - 4.3e-05 23.9 0.2 6.2e-05 23.4 0.2 1.3 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_29 PF13555.1 gi|313117327|ref|YP_004044310.1| - 0.0022 17.4 0.2 0.0045 16.4 0.1 1.4 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|313117327|ref|YP_004044310.1| - 0.025 14.9 0.5 0.043 14.1 0.3 1.3 1 0 0 1 1 1 0 AAA domain SMC_N PF02463.14 gi|313117327|ref|YP_004044310.1| - 0.046 12.9 0.3 2.1 7.5 0.0 2.5 3 0 0 3 3 3 0 RecF/RecN/SMC N terminal domain AAA_10 PF12846.2 gi|313117327|ref|YP_004044310.1| - 0.064 12.6 0.1 0.6 9.4 0.1 2.1 2 0 0 2 2 2 0 AAA-like domain SRP54 PF00448.17 gi|313117327|ref|YP_004044310.1| - 0.098 12.0 0.8 0.25 10.7 0.1 1.9 2 0 0 2 2 2 0 SRP54-type protein, GTPase domain ABC2_membrane_2 PF12679.2 gi|313117330|ref|YP_004044313.1| - 1.3e-34 119.3 36.5 7.5e-20 70.9 7.5 2.6 2 1 0 2 2 2 2 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|313117330|ref|YP_004044313.1| - 2e-13 50.0 18.1 2e-13 50.0 12.5 3.4 2 2 2 4 4 4 2 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|313117330|ref|YP_004044313.1| - 5e-07 29.0 48.8 1e-05 24.8 14.0 2.5 2 1 0 2 2 2 2 ABC-2 family transporter protein ABC_tran PF00005.22 gi|313117331|ref|YP_004044314.1| - 1.7e-28 99.6 0.0 3.1e-28 98.7 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|313117331|ref|YP_004044314.1| - 2.9e-13 50.4 0.0 1.2e-07 32.0 0.0 2.2 1 1 1 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|313117331|ref|YP_004044314.1| - 5.1e-06 25.9 0.0 1e-05 24.9 0.0 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain DUF4162 PF13732.1 gi|313117331|ref|YP_004044314.1| - 1.9e-05 25.0 0.0 3.8e-05 24.1 0.0 1.5 1 0 0 1 1 1 1 Domain of unknown function (DUF4162) AAA_23 PF13476.1 gi|313117331|ref|YP_004044314.1| - 0.0018 18.6 0.3 0.0028 18.0 0.2 1.3 1 0 0 1 1 1 1 AAA domain ArgK PF03308.11 gi|313117331|ref|YP_004044314.1| - 0.013 14.3 0.1 0.049 12.3 0.0 1.8 2 0 0 2 2 2 0 ArgK protein DUF258 PF03193.11 gi|313117331|ref|YP_004044314.1| - 0.015 14.5 0.0 0.024 13.8 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 SMC_N PF02463.14 gi|313117331|ref|YP_004044314.1| - 0.018 14.2 0.0 0.071 12.3 0.0 1.8 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain BCA_ABC_TP_C PF12399.3 gi|313117331|ref|YP_004044314.1| - 0.034 13.8 0.1 0.057 13.1 0.0 1.4 1 0 0 1 1 1 0 Branched-chain amino acid ATP-binding cassette transporter SRP54 PF00448.17 gi|313117331|ref|YP_004044314.1| - 0.046 13.1 0.0 0.075 12.4 0.0 1.4 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_30 PF13604.1 gi|313117331|ref|YP_004044314.1| - 0.056 13.0 0.0 0.12 11.8 0.0 1.6 1 1 0 1 1 1 0 AAA domain AAA_22 PF13401.1 gi|313117331|ref|YP_004044314.1| - 0.084 13.0 0.0 0.2 11.7 0.0 1.7 1 1 0 1 1 1 0 AAA domain AAA_16 PF13191.1 gi|313117331|ref|YP_004044314.1| - 0.09 12.7 0.0 0.15 12.0 0.0 1.5 1 0 0 1 1 1 0 AAA ATPase domain AAA_33 PF13671.1 gi|313117331|ref|YP_004044314.1| - 0.11 12.4 0.0 0.7 9.7 0.0 2.1 2 0 0 2 2 2 0 AAA domain DUF4258 PF14076.1 gi|313117333|ref|YP_004044316.1| - 0.11 12.5 2.2 0.22 11.5 1.5 1.5 1 1 0 1 1 1 0 Domain of unknown function (DUF4258) Tubulin PF00091.20 gi|313117335|ref|YP_004044318.1| - 2.5e-23 83.0 0.0 4.7e-23 82.1 0.0 1.4 1 0 0 1 1 1 1 Tubulin/FtsZ family, GTPase domain DUF1616 PF07760.6 gi|313117336|ref|YP_004044319.1| - 4.3e-95 318.1 0.2 4.8e-95 317.9 0.1 1.0 1 0 0 1 1 1 1 Protein of unknown function (DUF1616) DUF4131 PF13567.1 gi|313117336|ref|YP_004044319.1| - 0.15 11.4 7.4 3.4 7.0 2.4 2.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4131) DUF4231 PF14015.1 gi|313117336|ref|YP_004044319.1| - 5.7 6.9 8.8 0.19 11.7 0.2 2.6 3 0 0 3 3 3 0 Protein of unknown function (DUF4231) DUF4129 PF13559.1 gi|313117337|ref|YP_004044320.1| - 2.3e-07 30.6 1.6 1.4e-06 28.1 1.1 2.4 1 0 0 1 1 1 1 Domain of unknown function (DUF4129) CarboxypepD_reg PF13620.1 gi|313117337|ref|YP_004044320.1| - 9e-07 28.8 13.2 0.0043 17.0 0.8 4.5 3 1 0 3 3 3 2 Carboxypeptidase regulatory-like domain CaMBD PF02888.11 gi|313117337|ref|YP_004044320.1| - 0.00037 20.2 0.1 0.00078 19.2 0.1 1.5 1 0 0 1 1 1 1 Calmodulin binding domain DUF4480 PF13715.1 gi|313117337|ref|YP_004044320.1| - 0.014 15.3 6.8 3 7.9 0.0 4.0 4 0 0 4 4 4 0 Domain of unknown function (DUF4480) DUF58 PF01882.13 gi|313117338|ref|YP_004044321.1| - 2.4e-19 69.2 0.0 5.4e-19 68.1 0.0 1.6 1 0 0 1 1 1 1 Protein of unknown function DUF58 VWA_2 PF13519.1 gi|313117338|ref|YP_004044321.1| - 0.005 16.9 0.1 0.0084 16.2 0.1 1.4 1 0 0 1 1 1 1 von Willebrand factor type A domain DUF4381 PF14316.1 gi|313117339|ref|YP_004044322.1| - 2.1 8.4 5.8 0.33 11.0 0.8 2.0 1 1 1 3 3 3 0 Domain of unknown function (DUF4381) AAA_3 PF07726.6 gi|313117341|ref|YP_004044324.1| - 1.2e-61 206.0 0.5 2.8e-61 204.9 0.2 1.7 2 0 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_5 PF07728.9 gi|313117341|ref|YP_004044324.1| - 1.6e-13 50.5 0.0 2.9e-13 49.7 0.0 1.4 1 0 0 1 1 1 1 AAA domain (dynein-related subfamily) MCM PF00493.18 gi|313117341|ref|YP_004044324.1| - 1.8e-07 30.2 0.1 3.9e-06 25.9 0.0 2.1 2 0 0 2 2 2 1 MCM2/3/5 family Mg_chelatase PF01078.16 gi|313117341|ref|YP_004044324.1| - 8.8e-06 25.0 0.5 0.008 15.3 0.1 2.3 2 0 0 2 2 2 2 Magnesium chelatase, subunit ChlI Sigma54_activat PF00158.21 gi|313117341|ref|YP_004044324.1| - 1.8e-05 24.2 0.1 8.6e-05 22.0 0.0 1.9 1 1 0 1 1 1 1 Sigma-54 interaction domain RuvB_N PF05496.7 gi|313117341|ref|YP_004044324.1| - 0.00011 21.2 0.3 0.00066 18.7 0.2 2.1 1 1 0 1 1 1 1 Holliday junction DNA helicase ruvB N-terminus AAA PF00004.24 gi|313117341|ref|YP_004044324.1| - 0.00019 21.6 1.2 0.00043 20.4 0.1 2.1 2 1 0 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|313117341|ref|YP_004044324.1| - 0.085 13.0 0.0 0.72 9.9 0.0 2.5 2 1 0 2 2 2 0 AAA domain AAA_16 PF13191.1 gi|313117341|ref|YP_004044324.1| - 0.14 12.1 0.8 0.35 10.8 0.0 2.0 3 1 0 3 3 3 0 AAA ATPase domain DUF4350 PF14258.1 gi|313117342|ref|YP_004044325.1| - 2.1e-11 43.8 9.9 7.1e-09 35.7 0.1 3.6 3 1 1 4 4 4 2 Domain of unknown function (DUF4350) ABC_transp_aux PF09822.4 gi|313117342|ref|YP_004044325.1| - 0.019 14.4 0.0 0.039 13.4 0.0 1.5 1 0 0 1 1 1 0 ABC-type uncharacterized transport system DUF4159 PF13709.1 gi|313117342|ref|YP_004044325.1| - 0.022 13.8 0.0 0.045 12.8 0.0 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4159) TauE PF01925.14 gi|313117343|ref|YP_004044326.1| - 0.0057 16.1 2.0 0.0063 15.9 1.4 1.0 1 0 0 1 1 1 1 Sulfite exporter TauE/SafE DUF606 PF04657.8 gi|313117343|ref|YP_004044326.1| - 0.025 14.6 2.4 0.055 13.5 1.7 1.5 1 1 0 1 1 1 0 Protein of unknown function, DUF606 DUF3429 PF11911.3 gi|313117343|ref|YP_004044326.1| - 0.029 14.3 3.7 0.034 14.1 2.5 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3429) Imp-YgjV PF10688.4 gi|313117343|ref|YP_004044326.1| - 0.054 12.9 2.1 0.07 12.5 1.4 1.0 1 0 0 1 1 1 0 Bacterial inner membrane protein YlaC PF10777.4 gi|313117343|ref|YP_004044326.1| - 0.067 12.7 1.6 0.079 12.5 1.1 1.2 1 0 0 1 1 1 0 Inner membrane protein YlaC DUF2537 PF10801.3 gi|313117343|ref|YP_004044326.1| - 0.18 11.9 4.6 0.24 11.5 3.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2537) O-antigen_lig PF13425.1 gi|313117343|ref|YP_004044326.1| - 0.19 11.7 5.7 0.23 11.4 4.0 1.1 1 0 0 1 1 1 0 O-antigen ligase like membrane protein Acyl_transf_3 PF01757.17 gi|313117343|ref|YP_004044326.1| - 0.28 9.9 7.2 0.19 10.5 4.0 1.3 1 1 0 1 1 1 0 Acyltransferase family CARDB PF07705.6 gi|313117345|ref|YP_004044328.1| - 3.7e-32 110.3 74.9 1.9e-08 34.2 3.8 10.5 9 1 1 10 10 10 6 CARDB Prenyltrans_2 PF13249.1 gi|313117345|ref|YP_004044328.1| - 1.6e-17 63.8 10.1 4.8e-11 43.0 2.4 3.1 2 0 0 2 2 2 2 Prenyltransferase-like Prenyltrans_1 PF13243.1 gi|313117345|ref|YP_004044328.1| - 6.1e-15 55.1 11.8 5e-08 32.9 2.0 3.9 2 1 1 3 3 3 3 Prenyltransferase-like Prenyltrans PF00432.16 gi|313117345|ref|YP_004044328.1| - 2.9e-06 26.7 6.7 5.7 6.6 0.1 5.5 5 0 0 5 5 5 2 Prenyltransferase and squalene oxidase repeat Thiol-ester_cl PF10569.4 gi|313117345|ref|YP_004044328.1| - 2.5e-05 23.4 0.4 5.8e-05 22.2 0.3 1.6 1 0 0 1 1 1 1 Alpha-macro-globulin thiol-ester bond-forming region A2M_comp PF07678.9 gi|313117345|ref|YP_004044328.1| - 2.8e-05 23.4 3.1 0.0031 16.7 2.2 3.4 1 1 0 1 1 1 1 A-macroglobulin complement component Transglut_C PF00927.17 gi|313117345|ref|YP_004044328.1| - 9.7e-05 22.3 8.5 10 6.2 0.0 7.0 8 0 0 8 8 8 2 Transglutaminase family, C-terminal ig like domain DUF2393 PF09624.5 gi|313117345|ref|YP_004044328.1| - 0.016 14.6 2.2 0.31 10.5 0.0 3.3 3 0 0 3 3 3 0 Protein of unknown function (DUF2393) DUF824 PF05688.6 gi|313117345|ref|YP_004044328.1| - 8 6.1 13.5 5.9 6.6 0.5 4.6 4 0 0 4 4 4 0 Salmonella repeat of unknown function (DUF824) Dockerin_1 PF00404.13 gi|313117346|ref|YP_004044329.1| - 9e-07 28.3 10.5 0.00012 21.5 0.3 3.2 3 0 0 3 3 3 2 Dockerin type I repeat PEGA PF08308.6 gi|313117346|ref|YP_004044329.1| - 0.00098 18.8 1.0 0.38 10.5 0.1 3.3 3 0 0 3 3 3 2 PEGA domain YtkA PF13115.1 gi|313117346|ref|YP_004044329.1| - 0.026 14.8 9.4 1.1 9.6 0.1 4.4 4 1 1 5 5 5 0 YtkA-like CopC PF04234.7 gi|313117346|ref|YP_004044329.1| - 0.036 14.7 2.8 1.6 9.4 0.1 3.3 3 0 0 3 3 3 0 CopC domain CARDB PF07705.6 gi|313117346|ref|YP_004044329.1| - 0.036 14.1 0.1 0.036 14.1 0.1 3.1 1 1 1 2 2 2 0 CARDB Glypican PF01153.14 gi|313117347|ref|YP_004044330.1| - 1.3 7.5 3.6 1.5 7.3 2.5 1.2 1 0 0 1 1 1 0 Glypican Nop14 PF04147.7 gi|313117347|ref|YP_004044330.1| - 1.3 6.8 4.3 1.2 6.9 3.0 1.1 1 0 0 1 1 1 0 Nop14-like family DUF3244 PF11589.3 gi|313117349|ref|YP_004044332.1| - 4.9e-05 22.9 0.4 0.29 10.8 0.0 2.6 1 1 1 2 2 2 2 Domain of unknown function (DUF3244) FAM176 PF14851.1 gi|313117349|ref|YP_004044332.1| - 0.36 10.5 0.0 0.36 10.5 0.0 2.5 2 0 0 2 2 2 0 FAM176 family A2M_N PF01835.14 gi|313117350|ref|YP_004044333.1| - 0.00037 20.6 4.6 0.55 10.5 0.1 4.2 5 0 0 5 5 5 2 MG2 domain DUF4414 PF14377.1 gi|313117351|ref|YP_004044334.1| - 0.017 15.0 0.2 0.031 14.2 0.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4414) FtsX PF02687.16 gi|313117352|ref|YP_004044335.1| - 3.7e-17 62.2 33.9 4.9e-09 35.9 5.5 3.8 4 0 0 4 4 4 2 FtsX-like permease family PEGA PF08308.6 gi|313117352|ref|YP_004044335.1| - 0.00093 18.9 8.0 0.007 16.1 0.5 4.1 4 0 0 4 4 4 1 PEGA domain DUF4480 PF13715.1 gi|313117352|ref|YP_004044335.1| - 0.001 19.0 0.3 0.013 15.5 0.0 2.4 2 0 0 2 2 2 1 Domain of unknown function (DUF4480) CARDB PF07705.6 gi|313117352|ref|YP_004044335.1| - 0.0091 16.0 1.9 0.028 14.4 0.2 2.6 3 0 0 3 3 3 1 CARDB ABC_tran PF00005.22 gi|313117353|ref|YP_004044336.1| - 4.2e-30 104.8 0.0 5.4e-30 104.4 0.0 1.1 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|313117353|ref|YP_004044336.1| - 1.9e-08 34.5 0.0 0.00016 21.7 0.0 2.1 1 1 1 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|313117353|ref|YP_004044336.1| - 0.00028 20.9 3.1 0.0032 17.4 2.2 2.5 1 1 0 1 1 1 1 AAA ATPase domain SbcCD_C PF13558.1 gi|313117353|ref|YP_004044336.1| - 0.0016 18.3 0.1 0.015 15.1 0.1 2.3 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit AAA_29 PF13555.1 gi|313117353|ref|YP_004044336.1| - 0.002 17.6 0.4 0.0046 16.4 0.3 1.7 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_22 PF13401.1 gi|313117353|ref|YP_004044336.1| - 0.0056 16.8 0.0 0.44 10.6 0.0 2.2 2 0 0 2 2 2 1 AAA domain BPL_C PF02237.12 gi|313117353|ref|YP_004044336.1| - 0.014 15.0 0.2 0.11 12.1 0.1 2.2 2 0 0 2 2 2 0 Biotin protein ligase C terminal domain DUF258 PF03193.11 gi|313117353|ref|YP_004044336.1| - 0.015 14.4 0.1 0.025 13.7 0.1 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 AAA_19 PF13245.1 gi|313117353|ref|YP_004044336.1| - 0.015 15.0 0.5 0.044 13.5 0.0 1.9 2 1 0 2 2 2 0 Part of AAA domain SMC_N PF02463.14 gi|313117353|ref|YP_004044336.1| - 0.021 14.0 0.0 0.39 9.8 0.0 2.0 1 1 0 2 2 2 0 RecF/RecN/SMC N terminal domain T2SE PF00437.15 gi|313117353|ref|YP_004044336.1| - 0.023 13.5 0.0 0.043 12.7 0.0 1.4 1 0 0 1 1 1 0 Type II/IV secretion system protein AAA_33 PF13671.1 gi|313117353|ref|YP_004044336.1| - 0.03 14.1 0.2 0.087 12.7 0.2 1.8 1 1 0 1 1 1 0 AAA domain NACHT PF05729.7 gi|313117353|ref|YP_004044336.1| - 0.051 13.2 0.3 1.2 8.7 0.1 2.3 2 0 0 2 2 2 0 NACHT domain AAA_17 PF13207.1 gi|313117353|ref|YP_004044336.1| - 0.12 13.2 0.5 0.42 11.4 0.1 2.0 2 1 0 2 2 2 0 AAA domain AAA_23 PF13476.1 gi|313117353|ref|YP_004044336.1| - 0.12 12.6 0.0 0.14 12.4 0.0 1.2 1 0 0 1 1 1 0 AAA domain AAA_14 PF13173.1 gi|313117353|ref|YP_004044336.1| - 0.13 12.1 0.0 0.2 11.5 0.0 1.3 1 0 0 1 1 1 0 AAA domain Herpes_UL14 PF03580.9 gi|313117353|ref|YP_004044336.1| - 0.14 11.9 0.0 0.22 11.3 0.0 1.2 1 0 0 1 1 1 0 Herpesvirus UL14-like protein AAA_30 PF13604.1 gi|313117353|ref|YP_004044336.1| - 0.14 11.6 0.2 0.77 9.2 0.0 1.9 2 0 0 2 2 2 0 AAA domain Rad17 PF03215.10 gi|313117353|ref|YP_004044336.1| - 0.2 10.2 0.0 0.24 10.0 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein DUF457 PF04307.9 gi|313117354|ref|YP_004044337.1| - 5.4e-10 38.8 8.9 6.7e-10 38.5 6.2 1.1 1 0 0 1 1 1 1 Predicted membrane-bound metal-dependent hydrolase (DUF457) DUF3307 PF11750.3 gi|313117354|ref|YP_004044337.1| - 0.034 13.8 1.2 0.043 13.5 0.1 1.7 2 0 0 2 2 2 0 Protein of unknown function (DUF3307) FtsX PF02687.16 gi|313117356|ref|YP_004044339.1| - 6.5e-22 77.5 34.7 3.3e-15 55.9 4.5 3.6 4 0 0 4 4 4 2 FtsX-like permease family Glycos_transf_2 PF00535.21 gi|313117357|ref|YP_004044340.1| - 6.6e-23 81.2 0.0 1e-22 80.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|313117357|ref|YP_004044340.1| - 1.6e-06 28.1 0.0 2.2e-06 27.6 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase like family 2 FBPase_glpX PF03320.8 gi|313117357|ref|YP_004044340.1| - 0.39 9.3 1.5 0.38 9.3 0.1 1.6 2 0 0 2 2 2 0 Bacterial fructose-1,6-bisphosphatase, glpX-encoded HATPase_c PF02518.21 gi|313117358|ref|YP_004044341.1| - 4e-17 61.9 0.0 7.3e-17 61.0 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|313117358|ref|YP_004044341.1| - 1.4e-13 51.1 0.0 1.3e-12 47.9 0.0 2.4 2 0 0 2 2 2 1 PAS domain HisKA PF00512.20 gi|313117358|ref|YP_004044341.1| - 1.8e-13 50.2 1.3 1.8e-13 50.2 0.9 2.1 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain Response_reg PF00072.19 gi|313117358|ref|YP_004044341.1| - 4.1e-13 49.3 0.1 1.2e-12 47.7 0.0 1.9 2 0 0 2 2 2 1 Response regulator receiver domain PAS_4 PF08448.5 gi|313117358|ref|YP_004044341.1| - 5.5e-12 45.6 0.3 5.6e-11 42.4 0.0 2.6 2 0 0 2 2 2 1 PAS fold PAS PF00989.19 gi|313117358|ref|YP_004044341.1| - 4.5e-10 39.3 0.0 1.2e-09 37.9 0.0 1.8 1 0 0 1 1 1 1 PAS fold PAS_8 PF13188.1 gi|313117358|ref|YP_004044341.1| - 6.4e-06 25.8 0.0 3.6e-05 23.4 0.0 2.2 2 0 0 2 2 2 1 PAS domain PAS_7 PF12860.2 gi|313117358|ref|YP_004044341.1| - 0.00014 21.8 0.0 0.0021 18.0 0.0 2.4 2 0 0 2 2 2 1 PAS fold PAS_3 PF08447.6 gi|313117358|ref|YP_004044341.1| - 0.0005 20.1 0.1 0.011 15.8 0.0 2.6 1 1 1 2 2 2 1 PAS fold HATPase_c_3 PF13589.1 gi|313117358|ref|YP_004044341.1| - 0.049 13.2 0.0 0.1 12.2 0.0 1.5 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase NUDIX PF00293.23 gi|313117359|ref|YP_004044342.1| - 3.6e-13 49.3 0.0 4.4e-13 49.0 0.0 1.1 1 0 0 1 1 1 1 NUDIX domain NUDIX_4 PF14815.1 gi|313117359|ref|YP_004044342.1| - 0.022 14.1 0.0 0.032 13.6 0.0 1.2 1 0 0 1 1 1 0 NUDIX domain Epimerase PF01370.16 gi|313117360|ref|YP_004044343.1| - 2.2e-70 236.7 0.0 3e-70 236.3 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|313117360|ref|YP_004044343.1| - 4.4e-27 94.7 0.0 5.1e-27 94.5 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|313117360|ref|YP_004044343.1| - 5.8e-25 87.5 0.0 7.9e-25 87.1 0.0 1.1 1 0 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family Polysacc_synt_2 PF02719.10 gi|313117360|ref|YP_004044343.1| - 1.7e-20 73.1 0.0 3e-19 69.0 0.0 2.0 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein NAD_binding_4 PF07993.7 gi|313117360|ref|YP_004044343.1| - 4.4e-17 61.8 0.0 4e-16 58.6 0.0 2.1 1 1 0 1 1 1 1 Male sterility protein NAD_binding_10 PF13460.1 gi|313117360|ref|YP_004044343.1| - 2.1e-10 40.8 0.0 3.4e-10 40.2 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding NmrA PF05368.8 gi|313117360|ref|YP_004044343.1| - 3e-07 29.9 0.1 5.1e-07 29.1 0.1 1.3 1 0 0 1 1 1 1 NmrA-like family adh_short PF00106.20 gi|313117360|ref|YP_004044343.1| - 6.9e-05 22.8 0.2 0.00054 19.9 0.0 2.1 2 0 0 2 2 2 1 short chain dehydrogenase KR PF08659.5 gi|313117360|ref|YP_004044343.1| - 0.0079 15.8 0.0 0.025 14.2 0.0 1.8 1 1 0 1 1 1 1 KR domain DapB_N PF01113.15 gi|313117360|ref|YP_004044343.1| - 0.012 15.5 0.6 0.21 11.5 0.1 2.3 2 1 0 2 2 2 0 Dihydrodipicolinate reductase, N-terminus Saccharop_dh PF03435.13 gi|313117360|ref|YP_004044343.1| - 0.024 13.6 0.1 0.035 13.0 0.1 1.3 1 0 0 1 1 1 0 Saccharopine dehydrogenase RmlD_sub_bind PF04321.12 gi|313117361|ref|YP_004044344.1| - 2.5e-71 239.9 0.0 2.8e-71 239.7 0.0 1.0 1 0 0 1 1 1 1 RmlD substrate binding domain Epimerase PF01370.16 gi|313117361|ref|YP_004044344.1| - 4.2e-26 91.8 0.0 5.6e-26 91.4 0.0 1.2 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family NAD_binding_4 PF07993.7 gi|313117361|ref|YP_004044344.1| - 3.9e-08 32.5 0.0 6.6e-08 31.7 0.0 1.4 1 0 0 1 1 1 1 Male sterility protein Polysacc_synt_2 PF02719.10 gi|313117361|ref|YP_004044344.1| - 5.5e-07 28.7 0.2 1.7e-06 27.1 0.1 2.0 1 1 0 1 1 1 1 Polysaccharide biosynthesis protein 3Beta_HSD PF01073.14 gi|313117361|ref|YP_004044344.1| - 7.5e-07 28.1 0.1 1.3e-06 27.3 0.1 1.4 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_10 PF13460.1 gi|313117361|ref|YP_004044344.1| - 2.3e-06 27.7 0.0 3.3e-06 27.2 0.0 1.3 1 0 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|313117361|ref|YP_004044344.1| - 0.14 12.0 1.5 0.47 10.3 1.1 1.9 1 1 0 1 1 1 0 short chain dehydrogenase OrfB_Zn_ribbon PF07282.6 gi|313117362|ref|YP_004044345.1| - 0.0049 16.5 1.3 0.0072 15.9 0.9 1.2 1 0 0 1 1 1 1 Putative transposase DNA-binding domain IBR PF01485.16 gi|313117362|ref|YP_004044345.1| - 0.011 15.5 0.3 0.016 15.0 0.2 1.4 1 0 0 1 1 1 0 IBR domain zf-ribbon_3 PF13248.1 gi|313117362|ref|YP_004044345.1| - 0.028 13.6 3.2 0.087 12.0 2.2 1.9 1 1 0 1 1 1 0 zinc-ribbon domain UPF0547 PF10571.4 gi|313117362|ref|YP_004044345.1| - 0.044 13.4 3.6 0.044 13.4 2.5 2.2 2 1 0 2 2 2 0 Uncharacterised protein family UPF0547 Zn_Tnp_IS1595 PF12760.2 gi|313117362|ref|YP_004044345.1| - 0.05 13.4 0.5 0.083 12.7 0.3 1.4 1 0 0 1 1 1 0 Transposase zinc-ribbon domain DNA_ligase_ZBD PF03119.11 gi|313117362|ref|YP_004044345.1| - 0.051 13.2 5.4 0.12 12.1 3.7 1.6 1 1 0 1 1 1 0 NAD-dependent DNA ligase C4 zinc finger domain TF_Zn_Ribbon PF08271.7 gi|313117362|ref|YP_004044345.1| - 0.058 12.7 0.1 0.058 12.7 0.1 2.0 3 0 0 3 3 3 0 TFIIB zinc-binding RNHCP PF12647.2 gi|313117362|ref|YP_004044345.1| - 0.086 12.6 0.7 0.097 12.5 0.5 1.2 1 0 0 1 1 1 0 RNHCP domain zf-tcix PF14952.1 gi|313117362|ref|YP_004044345.1| - 0.19 11.1 2.4 0.46 9.8 1.6 1.6 1 1 0 1 1 1 0 Putative treble-clef, zinc-finger, Zn-binding zinc_ribbon_2 PF13240.1 gi|313117362|ref|YP_004044345.1| - 0.21 11.1 1.8 0.54 9.8 0.1 2.2 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|313117362|ref|YP_004044345.1| - 0.38 10.3 2.0 0.74 9.4 1.4 1.7 1 1 0 1 1 1 0 zinc-ribbon domain Zn-ribbon_8 PF09723.5 gi|313117362|ref|YP_004044345.1| - 2.8 7.9 4.7 1.5 8.8 0.6 2.1 1 1 2 3 3 3 0 Zinc ribbon domain NTP_transferase PF00483.18 gi|313117363|ref|YP_004044346.1| - 2.1e-56 190.9 0.0 2.6e-56 190.6 0.0 1.1 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|313117363|ref|YP_004044346.1| - 4.6e-10 39.7 0.0 7.5e-10 39.1 0.0 1.4 1 0 0 1 1 1 1 MobA-like NTP transferase domain Hexapep PF00132.19 gi|313117363|ref|YP_004044346.1| - 1.5e-08 33.7 3.7 0.0009 18.6 0.0 3.5 2 1 3 5 5 5 4 Bacterial transferase hexapeptide (six repeats) IspD PF01128.14 gi|313117363|ref|YP_004044346.1| - 0.0067 15.9 0.0 0.012 15.1 0.0 1.4 1 0 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase dTDP_sugar_isom PF00908.12 gi|313117364|ref|YP_004044347.1| - 5.6e-14 51.8 0.0 7.6e-14 51.4 0.0 1.0 1 0 0 1 1 1 1 dTDP-4-dehydrorhamnose 3,5-epimerase FdtA PF05523.6 gi|313117364|ref|YP_004044347.1| - 1.7e-06 27.5 0.0 2.3e-06 27.1 0.0 1.1 1 0 0 1 1 1 1 WxcM-like, C-terminal Cupin_2 PF07883.6 gi|313117364|ref|YP_004044347.1| - 0.0049 16.3 0.3 0.05 13.1 0.2 2.1 1 1 0 1 1 1 1 Cupin domain Polysacc_synt PF01943.12 gi|313117365|ref|YP_004044348.1| - 1.3e-27 96.7 36.9 9.8e-23 80.7 11.1 2.0 1 1 1 2 2 2 2 Polysaccharide biosynthesis protein Polysacc_synt_C PF14667.1 gi|313117365|ref|YP_004044348.1| - 6.2e-24 84.4 13.4 6.2e-24 84.4 9.3 3.6 2 1 0 2 2 2 1 Polysaccharide biosynthesis C-terminal domain Polysacc_synt_3 PF13440.1 gi|313117365|ref|YP_004044348.1| - 6e-15 55.3 24.0 6e-15 55.3 16.7 2.4 2 1 0 2 2 2 1 Polysaccharide biosynthesis protein MatE PF01554.13 gi|313117365|ref|YP_004044348.1| - 3.2e-11 43.1 7.4 3.2e-11 43.1 5.1 3.6 3 1 1 4 4 4 1 MatE MVIN PF03023.9 gi|313117365|ref|YP_004044348.1| - 1.6e-10 40.0 11.3 1.6e-10 40.0 7.8 2.2 2 1 0 2 2 2 1 MviN-like protein Sulfatase PF00884.18 gi|313117367|ref|YP_004044350.1| - 7.2e-18 64.8 0.0 9.1e-18 64.4 0.0 1.1 1 0 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|313117367|ref|YP_004044350.1| - 0.00025 20.4 0.2 0.00071 18.9 0.1 1.8 2 0 0 2 2 2 1 Type I phosphodiesterase / nucleotide pyrophosphatase DUF229 PF02995.12 gi|313117367|ref|YP_004044350.1| - 0.1 11.0 0.0 0.15 10.4 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF229) Glycos_transf_2 PF00535.21 gi|313117368|ref|YP_004044351.1| - 1.8e-21 76.5 0.1 2.6e-21 76.0 0.1 1.2 1 0 0 1 1 1 1 Glycosyl transferase family 2 Glyco_tranf_2_3 PF13641.1 gi|313117368|ref|YP_004044351.1| - 5.2e-14 52.6 0.0 9.8e-14 51.6 0.0 1.4 1 1 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_tranf_2_5 PF13712.1 gi|313117368|ref|YP_004044351.1| - 1.4e-05 24.4 0.1 0.00011 21.5 0.1 2.2 2 1 0 2 2 2 1 Glycosyltransferase like family Glyco_tranf_2_2 PF10111.4 gi|313117368|ref|YP_004044351.1| - 2.3e-05 23.5 0.0 3.1e-05 23.2 0.0 1.1 1 0 0 1 1 1 1 Glycosyltransferase like family 2 Glyco_trans_2_3 PF13632.1 gi|313117368|ref|YP_004044351.1| - 0.00098 18.8 0.0 0.0013 18.4 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase family group 2 Glyco_tranf_2_4 PF13704.1 gi|313117368|ref|YP_004044351.1| - 0.035 14.4 0.0 0.065 13.5 0.0 1.4 1 0 0 1 1 1 0 Glycosyl transferase family 2 Glyco_trans_1_4 PF13692.1 gi|313117369|ref|YP_004044352.1| - 1.7e-15 57.3 0.0 4.8e-15 55.9 0.0 1.7 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_1_2 PF13524.1 gi|313117369|ref|YP_004044352.1| - 4.3e-07 30.1 0.0 1e-06 28.9 0.0 1.6 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glycos_transf_1 PF00534.15 gi|313117369|ref|YP_004044352.1| - 0.0058 16.0 0.0 0.011 15.1 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Methyltransf_25 PF13649.1 gi|313117369|ref|YP_004044352.1| - 0.14 12.4 0.0 3.3 8.1 0.0 2.5 2 0 0 2 2 2 0 Methyltransferase domain Glycos_transf_1 PF00534.15 gi|313117370|ref|YP_004044353.1| - 1.8e-28 99.1 0.0 3.2e-28 98.3 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_1_4 PF13692.1 gi|313117370|ref|YP_004044353.1| - 1.2e-12 48.1 0.0 2.2e-12 47.2 0.0 1.4 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|313117370|ref|YP_004044353.1| - 3.4e-09 37.0 0.0 5.5e-09 36.3 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_transf_4 PF13439.1 gi|313117370|ref|YP_004044353.1| - 2.2e-07 30.7 0.1 3.5e-05 23.6 0.1 2.3 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|313117370|ref|YP_004044353.1| - 0.00097 19.3 0.0 0.011 16.0 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_2 PF13477.1 gi|313117370|ref|YP_004044353.1| - 0.001 18.9 0.2 0.037 13.8 0.1 2.3 1 1 0 1 1 1 1 Glycosyl transferase 4-like Sulfatase PF00884.18 gi|313117371|ref|YP_004044354.1| - 1.4e-14 54.0 2.0 5.4e-13 48.8 1.4 2.2 1 1 0 1 1 1 1 Sulfatase Phosphodiest PF01663.17 gi|313117371|ref|YP_004044354.1| - 0.0019 17.6 5.5 0.25 10.6 3.8 2.3 1 1 0 1 1 1 1 Type I phosphodiesterase / nucleotide pyrophosphatase Glycos_transf_1 PF00534.15 gi|313117372|ref|YP_004044355.1| - 2e-15 56.6 0.1 1.2e-14 54.0 0.0 2.2 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|313117372|ref|YP_004044355.1| - 4e-11 42.9 0.0 5.5e-11 42.4 0.0 1.2 1 0 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_4 PF13692.1 gi|313117372|ref|YP_004044355.1| - 4.2e-11 43.1 0.0 1.6e-10 41.2 0.0 1.8 2 0 0 2 2 2 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|313117372|ref|YP_004044355.1| - 1.6e-06 28.3 0.0 2.3e-06 27.8 0.0 1.2 1 0 0 1 1 1 1 Glycosyl transferase 4-like domain Glyco_trans_4_2 PF13477.1 gi|313117372|ref|YP_004044355.1| - 1.5e-05 24.8 0.3 0.00053 19.8 0.0 2.2 2 0 0 2 2 2 1 Glycosyl transferase 4-like Glyco_trans_1_2 PF13524.1 gi|313117372|ref|YP_004044355.1| - 0.00094 19.4 0.1 0.0035 17.5 0.0 1.9 1 1 0 1 1 1 1 Glycosyl transferases group 1 Glyco_transf_5 PF08323.6 gi|313117372|ref|YP_004044355.1| - 0.001 18.6 0.0 0.0018 17.8 0.0 1.4 1 0 0 1 1 1 1 Starch synthase catalytic domain Glycos_transf_1 PF00534.15 gi|313117373|ref|YP_004044356.1| - 8.6e-27 93.6 0.0 1.4e-26 92.9 0.0 1.3 1 0 0 1 1 1 1 Glycosyl transferases group 1 Glyco_trans_4_4 PF13579.1 gi|313117373|ref|YP_004044356.1| - 7.9e-19 68.3 1.9 7.9e-19 68.3 1.3 1.8 2 1 0 2 2 2 1 Glycosyl transferase 4-like domain Glyco_trans_1_4 PF13692.1 gi|313117373|ref|YP_004044356.1| - 1.8e-15 57.2 0.4 6.4e-15 55.4 0.1 2.0 2 1 0 2 2 2 1 Glycosyl transferases group 1 Glyco_transf_4 PF13439.1 gi|313117373|ref|YP_004044356.1| - 1.9e-15 57.0 0.0 5.2e-15 55.6 0.0 1.7 1 1 0 1 1 1 1 Glycosyltransferase Family 4 Glyco_trans_1_2 PF13524.1 gi|313117373|ref|YP_004044356.1| - 0.082 13.1 0.1 0.31 11.3 0.0 2.0 2 0 0 2 2 2 0 Glycosyl transferases group 1 NTP_transferase PF00483.18 gi|313117374|ref|YP_004044357.1| - 1.4e-43 149.0 0.0 1.5e-43 148.8 0.0 1.0 1 0 0 1 1 1 1 Nucleotidyl transferase NTP_transf_3 PF12804.2 gi|313117374|ref|YP_004044357.1| - 1.1e-14 54.8 0.0 1.4e-14 54.5 0.0 1.1 1 0 0 1 1 1 1 MobA-like NTP transferase domain IspD PF01128.14 gi|313117374|ref|YP_004044357.1| - 0.00025 20.6 0.0 0.0012 18.4 0.0 2.0 1 1 0 1 1 1 1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Glycos_transf_2 PF00535.21 gi|313117374|ref|YP_004044357.1| - 0.0081 15.8 0.1 0.014 15.0 0.0 1.5 1 1 0 1 1 1 1 Glycosyl transferase family 2 DUF1628 PF07790.6 gi|313117375|ref|YP_004044358.1| - 0.27 11.9 0.2 0.27 11.9 0.1 2.3 2 1 0 2 2 2 0 Protein of unknown function (DUF1628) CENP-T PF15511.1 gi|313117375|ref|YP_004044358.1| - 0.3 10.2 10.0 0.36 10.0 6.9 1.1 1 0 0 1 1 1 0 Centromere kinetochore component CENP-T Nop14 PF04147.7 gi|313117375|ref|YP_004044358.1| - 8.3 4.1 12.2 11 3.8 8.5 1.0 1 0 0 1 1 1 0 Nop14-like family Peptidase_S8 PF00082.17 gi|313117376|ref|YP_004044359.1| - 2.6e-47 161.3 5.6 2.6e-47 161.3 3.9 3.5 3 0 0 3 3 3 1 Subtilase family Beta_helix PF13229.1 gi|313117376|ref|YP_004044359.1| - 4.1e-14 52.6 14.2 4.1e-14 52.6 9.9 3.7 3 1 1 4 4 4 2 Right handed beta helix region NosD PF05048.8 gi|313117376|ref|YP_004044359.1| - 1.5e-12 47.2 6.1 3.3e-08 32.9 0.8 2.9 1 1 1 2 2 2 2 Periplasmic copper-binding protein (NosD) DUF4480 PF13715.1 gi|313117376|ref|YP_004044359.1| - 8.3e-09 35.3 1.1 2.5e-08 33.8 0.0 2.5 2 0 0 2 2 2 1 Domain of unknown function (DUF4480) Epimerase PF01370.16 gi|313117377|ref|YP_004044360.1| - 1.6e-42 145.5 0.1 2.1e-42 145.2 0.1 1.1 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family RmlD_sub_bind PF04321.12 gi|313117377|ref|YP_004044360.1| - 4.3e-15 55.3 0.0 5.5e-15 55.0 0.0 1.1 1 0 0 1 1 1 1 RmlD substrate binding domain 3Beta_HSD PF01073.14 gi|313117377|ref|YP_004044360.1| - 1.1e-11 44.0 0.1 4.9e-11 41.8 0.1 2.0 1 1 0 1 1 1 1 3-beta hydroxysteroid dehydrogenase/isomerase family NAD_binding_4 PF07993.7 gi|313117377|ref|YP_004044360.1| - 2.9e-10 39.5 0.0 4.8e-08 32.2 0.0 2.2 2 0 0 2 2 2 2 Male sterility protein Polysacc_synt_2 PF02719.10 gi|313117377|ref|YP_004044360.1| - 1e-09 37.7 0.3 8e-07 28.2 0.0 2.8 2 1 0 2 2 2 2 Polysaccharide biosynthesis protein NAD_binding_10 PF13460.1 gi|313117377|ref|YP_004044360.1| - 1.5e-05 25.0 0.0 1.9e-05 24.7 0.0 1.2 1 0 0 1 1 1 1 NADH(P)-binding adh_short PF00106.20 gi|313117377|ref|YP_004044360.1| - 0.00017 21.5 0.0 0.22 11.4 0.0 2.5 2 0 0 2 2 2 2 short chain dehydrogenase NmrA PF05368.8 gi|313117377|ref|YP_004044360.1| - 0.078 12.2 0.2 4.8 6.3 0.0 2.4 2 1 0 2 2 2 0 NmrA-like family HalX PF08663.5 gi|313117378|ref|YP_004044361.1| - 1e-15 57.4 5.8 1.8e-15 56.6 4.0 1.4 1 0 0 1 1 1 1 HalX domain Response_reg PF00072.19 gi|313117378|ref|YP_004044361.1| - 2.7e-15 56.3 0.4 4.4e-15 55.6 0.2 1.4 1 0 0 1 1 1 1 Response regulator receiver domain AIG1 PF04548.11 gi|313117378|ref|YP_004044361.1| - 0.033 13.2 0.7 0.045 12.8 0.5 1.2 1 0 0 1 1 1 0 AIG1 family DUF2762 PF10960.3 gi|313117378|ref|YP_004044361.1| - 0.045 13.4 1.2 0.086 12.5 0.6 1.6 1 1 0 1 1 1 0 Protein of unknown function (DUF2762) Bac_small_YrzI PF09501.5 gi|313117378|ref|YP_004044361.1| - 0.057 13.3 2.1 0.096 12.6 0.6 2.0 2 1 0 2 2 2 0 Probable sporulation protein (Bac_small_yrzI) IF-2B PF01008.12 gi|313117378|ref|YP_004044361.1| - 0.09 11.7 0.5 0.38 9.6 0.0 1.8 2 0 0 2 2 2 0 Initiation factor 2 subunit family TSGA13 PF14994.1 gi|313117379|ref|YP_004044362.1| - 0.067 12.3 0.1 0.1 11.7 0.1 1.2 1 0 0 1 1 1 0 Testis-specific gene 13 protein Utp14 PF04615.8 gi|313117379|ref|YP_004044362.1| - 1.1 7.3 7.4 1.5 6.9 5.1 1.1 1 0 0 1 1 1 0 Utp14 protein DUF4551 PF15087.1 gi|313117379|ref|YP_004044362.1| - 7.1 4.8 7.6 10 4.3 5.2 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF4551) DUF3584 PF12128.3 gi|313117380|ref|YP_004044363.1| - 0.0011 16.4 8.3 0.0017 15.8 5.8 1.3 1 0 0 1 1 1 1 Protein of unknown function (DUF3584) Apolipoprotein PF01442.13 gi|313117380|ref|YP_004044363.1| - 0.0036 16.8 11.3 0.013 15.0 7.6 1.7 1 1 0 1 1 1 1 Apolipoprotein A1/A4/E domain MitMem_reg PF13012.1 gi|313117380|ref|YP_004044363.1| - 0.0045 17.0 0.7 0.13 12.3 0.1 2.5 1 1 0 2 2 2 1 Maintenance of mitochondrial structure and function Baculo_PEP_C PF04513.7 gi|313117380|ref|YP_004044363.1| - 0.0047 16.7 4.4 0.0047 16.7 3.1 2.2 1 1 1 2 2 2 1 Baculovirus polyhedron envelope protein, PEP, C terminus RmuC PF02646.11 gi|313117380|ref|YP_004044363.1| - 0.01 14.7 8.3 0.12 11.1 3.1 2.2 1 1 1 2 2 2 0 RmuC family Seryl_tRNA_N PF02403.17 gi|313117380|ref|YP_004044363.1| - 0.011 15.7 3.7 0.011 15.7 2.6 2.5 1 1 1 2 2 2 0 Seryl-tRNA synthetase N-terminal domain Prefoldin_2 PF01920.15 gi|313117380|ref|YP_004044363.1| - 0.028 14.1 14.7 3.4 7.4 0.4 4.1 2 1 2 4 4 4 0 Prefoldin subunit DUF1895 PF08988.5 gi|313117380|ref|YP_004044363.1| - 0.044 13.8 3.0 0.092 12.7 2.1 1.6 1 0 0 1 1 1 0 Protein of unknown function (DUF1895) Spc7 PF08317.6 gi|313117380|ref|YP_004044363.1| - 0.058 12.0 12.3 0.14 10.7 8.5 1.6 1 1 0 1 1 1 0 Spc7 kinetochore protein Cep57_CLD_2 PF14197.1 gi|313117380|ref|YP_004044363.1| - 0.064 13.2 14.7 0.3 11.0 0.5 3.2 1 1 1 2 2 2 0 Centrosome localisation domain of PPC89 CENP-F_leu_zip PF10473.4 gi|313117380|ref|YP_004044363.1| - 0.11 12.3 18.3 0.088 12.6 6.0 2.8 1 1 2 3 3 3 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 PilJ PF13675.1 gi|313117380|ref|YP_004044363.1| - 0.18 12.1 6.8 2.6 8.4 0.3 3.0 1 1 1 2 2 2 0 Type IV pili methyl-accepting chemotaxis transducer N-term Tropomyosin_1 PF12718.2 gi|313117380|ref|YP_004044363.1| - 0.29 10.9 15.7 2.3 8.0 10.2 2.8 1 1 0 1 1 1 0 Tropomyosin like ADIP PF11559.3 gi|313117380|ref|YP_004044363.1| - 0.34 10.7 13.2 1.5 8.6 4.9 2.3 1 1 1 2 2 2 0 Afadin- and alpha -actinin-Binding DUF4559 PF15112.1 gi|313117380|ref|YP_004044363.1| - 0.37 9.8 7.5 0.64 9.1 5.2 1.3 1 0 0 1 1 1 0 Domain of unknown function (DUF4559) Atg14 PF10186.4 gi|313117380|ref|YP_004044363.1| - 0.57 9.0 8.0 1.7 7.5 5.5 1.8 1 1 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 DUF972 PF06156.8 gi|313117380|ref|YP_004044363.1| - 0.71 10.2 13.7 0.75 10.1 1.5 3.2 2 1 1 3 3 3 0 Protein of unknown function (DUF972) Snapin_Pallidin PF14712.1 gi|313117380|ref|YP_004044363.1| - 0.74 10.1 12.1 1.4 9.2 2.2 2.9 1 1 1 2 2 2 0 Snapin/Pallidin HemX PF04375.9 gi|313117380|ref|YP_004044363.1| - 0.8 8.2 9.4 4.6 5.7 6.4 2.0 1 1 0 1 1 1 0 HemX Stathmin PF00836.14 gi|313117380|ref|YP_004044363.1| - 0.88 9.2 5.7 0.88 9.2 1.0 2.3 1 1 1 2 2 2 0 Stathmin family V_ATPase_I PF01496.14 gi|313117380|ref|YP_004044363.1| - 0.92 7.2 11.0 3.7 5.2 2.1 2.0 1 1 1 2 2 2 0 V-type ATPase 116kDa subunit family DUF948 PF06103.6 gi|313117380|ref|YP_004044363.1| - 1.1 9.1 8.7 2.3 8.1 0.4 2.6 3 0 0 3 3 2 0 Bacterial protein of unknown function (DUF948) DUF1664 PF07889.7 gi|313117380|ref|YP_004044363.1| - 1.3 8.8 9.9 2.1 8.1 0.4 2.5 1 1 2 3 3 3 0 Protein of unknown function (DUF1664) TBPIP PF07106.8 gi|313117380|ref|YP_004044363.1| - 1.4 8.3 12.1 0.26 10.8 2.6 2.4 1 1 1 2 2 2 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) NPV_P10 PF05531.7 gi|313117380|ref|YP_004044363.1| - 1.5 9.1 15.3 39 4.5 0.2 3.7 2 1 2 4 4 3 0 Nucleopolyhedrovirus P10 protein CorA PF01544.13 gi|313117380|ref|YP_004044363.1| - 1.5 7.7 9.1 2.6 6.9 6.1 1.6 1 1 0 1 1 1 0 CorA-like Mg2+ transporter protein ACCA PF03255.9 gi|313117380|ref|YP_004044363.1| - 1.6 8.2 4.7 0.72 9.3 0.2 2.5 2 1 1 3 3 3 0 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit IncA PF04156.9 gi|313117380|ref|YP_004044363.1| - 2.1 7.9 21.7 13 5.3 14.2 2.4 1 1 0 1 1 1 0 IncA protein Nup54 PF13874.1 gi|313117380|ref|YP_004044363.1| - 2.4 7.8 11.9 0.89 9.2 2.0 2.6 1 1 0 2 2 2 0 Nucleoporin complex subunit 54 BLOC1_2 PF10046.4 gi|313117380|ref|YP_004044363.1| - 2.4 8.3 10.8 11 6.2 0.5 2.6 1 1 1 2 2 2 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 CENP-Q PF13094.1 gi|313117380|ref|YP_004044363.1| - 2.5 8.0 12.9 8.9 6.3 8.9 1.9 1 1 0 1 1 1 0 CENP-Q, a CENPA-CAD centromere complex subunit APG6 PF04111.7 gi|313117380|ref|YP_004044363.1| - 2.8 6.8 15.0 1 8.3 5.1 2.1 1 1 1 2 2 2 0 Autophagy protein Apg6 Occludin_ELL PF07303.8 gi|313117380|ref|YP_004044363.1| - 3.1 8.5 5.0 27 5.5 0.3 2.7 1 1 1 2 2 2 0 Occludin homology domain CASP_C PF08172.7 gi|313117380|ref|YP_004044363.1| - 3.1 6.7 7.9 0.46 9.4 0.5 2.6 2 1 1 3 3 3 0 CASP C terminal COG2 PF06148.6 gi|313117380|ref|YP_004044363.1| - 3.5 7.5 12.3 4.2 7.2 0.4 3.1 1 1 2 3 3 3 0 COG (conserved oligomeric Golgi) complex component, COG2 DUF812 PF05667.6 gi|313117380|ref|YP_004044363.1| - 4.2 5.7 17.2 0.09 11.2 1.2 2.2 1 1 1 2 2 2 0 Protein of unknown function (DUF812) CCDC-167 PF15188.1 gi|313117380|ref|YP_004044363.1| - 5.1 7.1 12.0 0.27 11.2 2.1 3.0 1 1 1 2 2 2 0 Coiled-coil domain-containing protein 167 DUF4164 PF13747.1 gi|313117380|ref|YP_004044363.1| - 5.9 7.0 13.0 1.4 9.0 3.9 2.9 1 1 1 2 2 2 0 Domain of unknown function (DUF4164) Psb28 PF03912.9 gi|313117381|ref|YP_004044364.1| - 0.027 14.4 0.3 6.8 6.7 0.0 2.8 2 0 0 2 2 2 0 Psb28 protein Poly_export PF02563.11 gi|313117381|ref|YP_004044364.1| - 0.087 12.6 2.3 1.3 8.8 0.1 3.6 2 1 1 3 3 3 0 Polysaccharide biosynthesis/export protein Sarcoglycan_1 PF04790.8 gi|313117381|ref|YP_004044364.1| - 0.13 11.4 13.3 4.4 6.4 0.1 4.9 2 1 0 4 4 4 0 Sarcoglycan complex subunit protein Peptidase_S24 PF00717.18 gi|313117382|ref|YP_004044365.1| - 2.8e-08 33.2 0.6 6e-08 32.2 0.0 1.8 2 0 0 2 2 2 1 Peptidase S24-like GPI2 PF06432.6 gi|313117382|ref|YP_004044365.1| - 0.081 12.2 0.1 0.17 11.2 0.1 1.5 1 0 0 1 1 1 0 Phosphatidylinositol N-acetylglucosaminyltransferase TrbC PF04956.8 gi|313117382|ref|YP_004044365.1| - 4.6 7.3 23.0 0.062 13.3 2.6 3.6 4 0 0 4 4 4 0 TrbC/VIRB2 family DUF4232 PF14016.1 gi|313117383|ref|YP_004044366.1| - 0.17 11.5 5.8 0.32 10.6 1.1 2.6 1 1 1 2 2 2 0 Protein of unknown function (DUF4232) DUF1214 PF06742.6 gi|313117383|ref|YP_004044366.1| - 4 7.9 5.3 11 6.4 0.1 2.8 1 1 1 3 3 3 0 Protein of unknown function (DUF1214) HlyIII PF03006.15 gi|313117386|ref|YP_004044369.1| - 0.0096 15.3 0.2 0.017 14.5 0.1 1.4 1 0 0 1 1 1 1 Haemolysin-III related OapA_N PF08525.6 gi|313117386|ref|YP_004044369.1| - 0.25 11.1 0.9 0.56 10.0 0.6 1.6 1 0 0 1 1 1 0 Opacity-associated protein A N-terminal motif T2SM PF04612.7 gi|313117387|ref|YP_004044370.1| - 0.015 15.0 0.2 1.9 8.2 0.1 2.3 2 0 0 2 2 2 0 Type II secretion system (T2SS), protein M DUF4131 PF13567.1 gi|313117387|ref|YP_004044370.1| - 0.077 12.4 0.4 0.17 11.2 0.2 1.5 1 0 0 1 1 1 0 Domain of unknown function (DUF4131) OppC_N PF12911.2 gi|313117388|ref|YP_004044371.1| - 0.0066 15.7 0.2 0.027 13.8 0.0 2.0 2 0 0 2 2 2 1 N-terminal TM domain of oligopeptide transport permease C Apt1 PF10351.4 gi|313117389|ref|YP_004044372.1| - 1.7 7.4 11.7 2.4 6.8 8.1 1.3 1 0 0 1 1 1 0 Golgi-body localisation protein domain NPR3 PF03666.8 gi|313117389|ref|YP_004044372.1| - 6.9 5.0 6.5 12 4.3 4.5 1.2 1 0 0 1 1 1 0 Nitrogen Permease regulator of amino acid transport activity 3 zf-FPG_IleRS PF06827.9 gi|313117390|ref|YP_004044373.1| - 0.00046 19.7 2.2 0.0011 18.5 1.5 1.6 1 0 0 1 1 1 1 Zinc finger found in FPG and IleRS zf-RING_6 PF14835.1 gi|313117390|ref|YP_004044373.1| - 0.0038 16.9 0.1 0.005 16.6 0.1 1.2 1 0 0 1 1 1 1 zf-RING of BARD1-type protein zf-TFIIB PF13453.1 gi|313117390|ref|YP_004044373.1| - 0.0054 15.8 1.5 0.011 14.8 1.1 1.6 1 0 0 1 1 1 1 Transcription factor zinc-finger Zn_Tnp_IS1595 PF12760.2 gi|313117390|ref|YP_004044373.1| - 0.1 12.4 0.8 0.16 11.7 0.6 1.4 1 0 0 1 1 1 0 Transposase zinc-ribbon domain Lar_restr_allev PF14354.1 gi|313117390|ref|YP_004044373.1| - 0.14 12.4 0.6 0.24 11.7 0.4 1.5 1 0 0 1 1 1 0 Restriction alleviation protein Lar DUF2387 PF09526.5 gi|313117390|ref|YP_004044373.1| - 0.16 11.8 1.7 0.33 10.8 1.2 1.8 1 1 0 1 1 1 0 Probable metal-binding protein (DUF2387) HTH_10 PF04967.7 gi|313117391|ref|YP_004044374.1| - 1.9e-22 78.5 0.0 1e-21 76.2 0.0 2.2 2 0 0 2 2 2 1 HTH DNA binding domain GAF_2 PF13185.1 gi|313117391|ref|YP_004044374.1| - 1.8e-12 47.9 3.9 2.8e-08 34.3 0.2 2.5 2 0 0 2 2 2 2 GAF domain GAF_3 PF13492.1 gi|313117391|ref|YP_004044374.1| - 6.3e-09 36.0 3.4 1.3e-05 25.2 0.4 2.7 2 0 0 2 2 2 2 GAF domain HTH_1 PF00126.22 gi|313117391|ref|YP_004044374.1| - 2.9e-05 23.7 0.0 0.00012 21.7 0.0 2.1 1 0 0 1 1 1 1 Bacterial regulatory helix-turn-helix protein, lysR family Sigma70_r4 PF04545.11 gi|313117391|ref|YP_004044374.1| - 0.00034 19.8 0.0 0.0011 18.2 0.0 1.8 1 0 0 1 1 1 1 Sigma-70, region 4 GerE PF00196.14 gi|313117391|ref|YP_004044374.1| - 0.0017 17.6 0.0 0.15 11.3 0.0 3.1 2 1 0 2 2 2 1 Bacterial regulatory proteins, luxR family HTH_5 PF01022.15 gi|313117391|ref|YP_004044374.1| - 0.0018 17.9 0.0 0.0043 16.6 0.0 1.6 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family AAA_23 PF13476.1 gi|313117393|ref|YP_004044376.1| - 3e-07 30.9 23.7 3e-07 30.9 16.4 4.8 2 2 1 3 3 2 1 AAA domain Seryl_tRNA_N PF02403.17 gi|313117393|ref|YP_004044376.1| - 2.8e-06 27.3 65.0 0.00024 21.1 4.4 5.7 2 2 3 6 6 6 4 Seryl-tRNA synthetase N-terminal domain GAS PF13851.1 gi|313117393|ref|YP_004044376.1| - 0.00018 20.7 12.2 0.00018 20.7 8.4 3.8 2 2 2 4 4 4 3 Growth-arrest specific micro-tubule binding Spc7 PF08317.6 gi|313117393|ref|YP_004044376.1| - 0.0011 17.7 74.2 0.011 14.4 15.5 4.2 2 2 1 3 3 3 2 Spc7 kinetochore protein Atg14 PF10186.4 gi|313117393|ref|YP_004044376.1| - 0.0079 15.1 69.8 0.11 11.4 5.0 4.2 2 2 2 4 4 4 3 UV radiation resistance protein and autophagy-related subunit 14 Snapin_Pallidin PF14712.1 gi|313117393|ref|YP_004044376.1| - 0.011 16.0 48.4 0.013 15.7 3.3 6.2 2 2 5 7 7 7 0 Snapin/Pallidin Reo_sigmaC PF04582.7 gi|313117393|ref|YP_004044376.1| - 0.012 14.8 25.8 0.22 10.6 2.9 4.1 2 1 3 5 5 5 0 Reovirus sigma C capsid protein AAA_13 PF13166.1 gi|313117393|ref|YP_004044376.1| - 0.034 12.6 61.7 0.22 9.9 15.0 3.0 1 1 0 2 2 2 0 AAA domain IncA PF04156.9 gi|313117393|ref|YP_004044376.1| - 0.062 12.8 95.0 0.035 13.6 12.8 4.3 2 2 2 4 4 4 0 IncA protein DUF1664 PF07889.7 gi|313117393|ref|YP_004044376.1| - 0.11 12.2 47.0 0.079 12.7 5.1 6.1 2 2 4 6 6 6 0 Protein of unknown function (DUF1664) WEMBL PF05701.6 gi|313117393|ref|YP_004044376.1| - 0.15 10.4 66.9 0.034 12.6 13.7 2.8 2 1 0 2 2 2 0 Weak chloroplast movement under blue light PilJ PF13675.1 gi|313117393|ref|YP_004044376.1| - 0.31 11.3 38.6 0.93 9.8 1.1 4.9 2 2 2 4 4 4 0 Type IV pili methyl-accepting chemotaxis transducer N-term TBPIP PF07106.8 gi|313117393|ref|YP_004044376.1| - 0.38 10.2 68.8 0.2 11.1 10.5 5.9 1 1 7 8 8 8 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Laminin_II PF06009.7 gi|313117393|ref|YP_004044376.1| - 0.53 10.0 44.7 0.35 10.6 1.6 4.9 2 2 3 5 5 5 0 Laminin Domain II HsbA PF12296.3 gi|313117393|ref|YP_004044376.1| - 0.63 9.9 6.2 1 9.2 0.0 3.7 3 1 0 3 3 3 0 Hydrophobic surface binding protein A DUF4041 PF13250.1 gi|313117393|ref|YP_004044376.1| - 1.5 8.4 4.7 0.46 10.0 0.1 2.6 3 0 0 3 3 1 0 Domain of unknown function (DUF4041) CENP-F_leu_zip PF10473.4 gi|313117393|ref|YP_004044376.1| - 1.8 8.4 89.4 0.1 12.4 7.0 4.4 2 2 2 4 4 4 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 DUF3584 PF12128.3 gi|313117393|ref|YP_004044376.1| - 2.1 5.5 70.3 3.9 4.6 16.5 2.5 1 1 1 2 2 2 0 Protein of unknown function (DUF3584) SMC_N PF02463.14 gi|313117393|ref|YP_004044376.1| - 3.2 6.9 26.6 3.6 6.7 0.0 3.1 3 1 0 3 3 3 0 RecF/RecN/SMC N terminal domain DUF4201 PF13870.1 gi|313117393|ref|YP_004044376.1| - 3.5 7.0 63.1 3.1 7.2 10.0 4.5 2 2 1 3 3 3 0 Domain of unknown function (DUF4201) NPV_P10 PF05531.7 gi|313117393|ref|YP_004044376.1| - 4.1 7.7 37.7 3 8.1 0.9 6.6 2 2 2 4 4 4 0 Nucleopolyhedrovirus P10 protein Mnd1 PF03962.10 gi|313117393|ref|YP_004044376.1| - 5.1 6.7 70.6 2.5 7.7 15.4 5.0 2 2 1 3 3 3 0 Mnd1 family APG6 PF04111.7 gi|313117393|ref|YP_004044376.1| - 6.1 5.7 77.8 0.33 9.9 24.0 3.8 2 2 1 3 3 3 0 Autophagy protein Apg6 DUF4407 PF14362.1 gi|313117393|ref|YP_004044376.1| - 6.3 5.6 54.1 0.014 14.3 17.3 3.3 1 1 2 3 3 2 0 Domain of unknown function (DUF4407) Cortex-I_coil PF09304.5 gi|313117393|ref|YP_004044376.1| - 9 6.3 78.3 0.089 12.8 10.7 5.7 2 2 3 5 5 5 0 Cortexillin I, coiled coil BLOC1_2 PF10046.4 gi|313117393|ref|YP_004044376.1| - 9.6 6.4 53.5 0.063 13.4 3.9 6.3 2 2 4 7 7 6 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 HalX PF08663.5 gi|313117396|ref|YP_004044379.1| - 3.1e-11 43.0 7.8 4.9e-11 42.4 5.4 1.3 1 0 0 1 1 1 1 HalX domain Erp_C PF06780.6 gi|313117396|ref|YP_004044379.1| - 0.055 13.3 1.5 0.061 13.1 1.0 1.1 1 0 0 1 1 1 0 Erp protein C-terminus TetR_C_2 PF08361.6 gi|313117396|ref|YP_004044379.1| - 0.098 12.5 0.2 0.12 12.3 0.1 1.2 1 0 0 1 1 1 0 MAATS-type transcriptional repressor, C-terminal region TBPIP PF07106.8 gi|313117396|ref|YP_004044379.1| - 0.13 11.8 4.0 0.18 11.3 2.8 1.4 1 1 0 1 1 1 0 Tat binding protein 1(TBP-1)-interacting protein (TBPIP) Bac_small_YrzI PF09501.5 gi|313117396|ref|YP_004044379.1| - 0.14 12.0 0.2 0.14 12.0 0.1 2.3 3 0 0 3 3 3 0 Probable sporulation protein (Bac_small_yrzI) Spc7 PF08317.6 gi|313117396|ref|YP_004044379.1| - 0.33 9.5 7.3 0.38 9.3 5.1 1.1 1 0 0 1 1 1 0 Spc7 kinetochore protein UPF0449 PF15136.1 gi|313117396|ref|YP_004044379.1| - 0.41 10.8 2.5 0.44 10.7 1.2 1.4 1 1 0 1 1 1 0 Uncharacterised protein family UPF0449 Atg14 PF10186.4 gi|313117396|ref|YP_004044379.1| - 1.9 7.3 8.4 2.1 7.1 5.8 1.1 1 0 0 1 1 1 0 UV radiation resistance protein and autophagy-related subunit 14 DivIC PF04977.10 gi|313117396|ref|YP_004044379.1| - 8.1 6.0 7.5 2.7 7.5 0.8 2.4 1 1 1 2 2 2 0 Septum formation initiator Response_reg PF00072.19 gi|313117397|ref|YP_004044380.1| - 1.4e-12 47.6 0.3 1.7e-12 47.3 0.2 1.0 1 0 0 1 1 1 1 Response regulator receiver domain TPP_enzyme_N PF02776.13 gi|313117398|ref|YP_004044381.1| - 0.14 11.6 0.1 0.25 10.8 0.0 1.3 1 0 0 1 1 1 0 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HATPase_c PF02518.21 gi|313117399|ref|YP_004044382.1| - 1.3e-23 82.8 0.0 2.4e-23 81.9 0.0 1.4 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_4 PF08448.5 gi|313117399|ref|YP_004044382.1| - 8.2e-23 80.5 0.5 1.3e-12 47.7 0.1 2.5 2 0 0 2 2 2 2 PAS fold PAS_9 PF13426.1 gi|313117399|ref|YP_004044382.1| - 6.1e-16 58.6 0.1 2.6e-08 34.1 0.0 2.9 2 0 0 2 2 2 2 PAS domain PAS PF00989.19 gi|313117399|ref|YP_004044382.1| - 1.2e-10 41.1 0.0 1.9e-08 34.0 0.0 2.7 2 0 0 2 2 2 1 PAS fold HATPase_c_2 PF13581.1 gi|313117399|ref|YP_004044382.1| - 1e-06 28.5 0.0 2.4e-06 27.3 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HATPase_c_5 PF14501.1 gi|313117399|ref|YP_004044382.1| - 1e-06 28.3 0.0 2.3e-06 27.2 0.0 1.6 1 0 0 1 1 1 1 GHKL domain HisKA PF00512.20 gi|313117399|ref|YP_004044382.1| - 2.9e-06 27.1 0.8 2.9e-06 27.1 0.5 2.1 2 0 0 2 2 2 1 His Kinase A (phospho-acceptor) domain SPOB_a PF14689.1 gi|313117399|ref|YP_004044382.1| - 3.7e-06 26.3 1.5 8.4e-06 25.2 1.0 1.7 1 0 0 1 1 1 1 Sensor_kinase_SpoOB-type, alpha-helical domain HATPase_c_3 PF13589.1 gi|313117399|ref|YP_004044382.1| - 0.024 14.2 0.0 0.084 12.5 0.0 1.9 1 0 0 1 1 1 0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_3 PF08447.6 gi|313117399|ref|YP_004044382.1| - 0.083 12.9 0.1 8.9 6.4 0.0 2.6 2 0 0 2 2 2 0 PAS fold PAS_7 PF12860.2 gi|313117399|ref|YP_004044382.1| - 0.17 11.8 2.5 1.1 9.2 0.0 2.9 3 1 0 3 3 2 0 PAS fold DUF883 PF05957.8 gi|313117399|ref|YP_004044382.1| - 0.38 11.1 2.5 23 5.4 0.0 2.9 1 1 2 3 3 3 0 Bacterial protein of unknown function (DUF883) AIF-MLS PF14962.1 gi|313117399|ref|YP_004044382.1| - 0.84 9.2 7.7 0.079 12.5 2.1 1.7 2 0 0 2 2 2 0 Mitochondria Localisation Sequence p450 PF00067.17 gi|313117400|ref|YP_004044383.1| - 6.1e-91 305.2 0.0 6.8e-91 305.0 0.0 1.0 1 0 0 1 1 1 1 Cytochrome P450 Pr_beta_C PF12465.3 gi|313117400|ref|YP_004044383.1| - 0.021 14.0 0.0 0.05 12.8 0.0 1.7 1 0 0 1 1 1 0 Proteasome beta subunits C terminal HTH_10 PF04967.7 gi|313117401|ref|YP_004044384.1| - 1.8e-18 65.8 0.0 3.4e-18 64.9 0.0 1.5 1 0 0 1 1 1 1 HTH DNA binding domain Sigma70_r4_2 PF08281.7 gi|313117401|ref|YP_004044384.1| - 0.0052 16.2 0.1 0.29 10.6 0.0 2.4 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_20 PF12840.2 gi|313117401|ref|YP_004044384.1| - 0.022 14.5 0.0 0.049 13.4 0.0 1.7 1 0 0 1 1 1 0 Helix-turn-helix domain Sigma70_r4 PF04545.11 gi|313117401|ref|YP_004044384.1| - 0.028 13.7 0.1 0.17 11.2 0.0 2.2 2 1 0 2 2 2 0 Sigma-70, region 4 GerE PF00196.14 gi|313117401|ref|YP_004044384.1| - 0.031 13.5 0.1 0.9 8.9 0.0 2.5 2 0 0 2 2 2 0 Bacterial regulatory proteins, luxR family MarR_2 PF12802.2 gi|313117401|ref|YP_004044384.1| - 0.033 13.8 0.1 0.12 12.0 0.0 2.0 2 0 0 2 2 2 0 MarR family HTH_23 PF13384.1 gi|313117401|ref|YP_004044384.1| - 0.071 12.7 0.1 0.14 11.8 0.1 1.5 1 0 0 1 1 1 0 Homeodomain-like domain HTH_38 PF13936.1 gi|313117401|ref|YP_004044384.1| - 0.097 12.2 0.0 0.32 10.5 0.0 1.9 2 0 0 2 2 2 0 Helix-turn-helix domain TroA PF01297.12 gi|313117402|ref|YP_004044385.1| - 7.6e-45 153.1 0.1 9.8e-45 152.7 0.1 1.0 1 0 0 1 1 1 1 Periplasmic solute binding protein family ABC_tran PF00005.22 gi|313117403|ref|YP_004044386.1| - 4e-31 108.1 0.0 5.4e-31 107.7 0.0 1.2 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|313117403|ref|YP_004044386.1| - 2.5e-12 47.3 0.0 4.9e-06 26.7 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_29 PF13555.1 gi|313117403|ref|YP_004044386.1| - 1.9e-05 24.1 0.1 4e-05 23.0 0.1 1.5 1 0 0 1 1 1 1 P-loop containing region of AAA domain SMC_N PF02463.14 gi|313117403|ref|YP_004044386.1| - 3.1e-05 23.3 0.4 0.0012 18.1 0.3 2.1 1 1 0 1 1 1 1 RecF/RecN/SMC N terminal domain ABC_ATPase PF09818.4 gi|313117403|ref|YP_004044386.1| - 0.00029 19.5 0.3 0.17 10.3 0.1 3.0 2 1 0 2 2 2 1 Predicted ATPase of the ABC class AAA_10 PF12846.2 gi|313117403|ref|YP_004044386.1| - 0.00043 19.8 0.6 0.00097 18.6 0.4 1.8 1 1 0 1 1 1 1 AAA-like domain AAA_22 PF13401.1 gi|313117403|ref|YP_004044386.1| - 0.00051 20.1 0.2 0.068 13.3 0.0 2.2 2 0 0 2 2 2 1 AAA domain SbcCD_C PF13558.1 gi|313117403|ref|YP_004044386.1| - 0.0024 17.7 0.4 0.04 13.8 0.3 2.2 1 1 0 1 1 1 1 Putative exonuclease SbcCD, C subunit MMR_HSR1 PF01926.18 gi|313117403|ref|YP_004044386.1| - 0.0033 17.3 0.0 0.0053 16.7 0.0 1.4 1 0 0 1 1 1 1 50S ribosome-binding GTPase AAA_23 PF13476.1 gi|313117403|ref|YP_004044386.1| - 0.0037 17.6 0.0 0.0053 17.0 0.0 1.2 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|313117403|ref|YP_004044386.1| - 0.004 17.1 0.3 0.011 15.7 0.2 1.8 1 1 0 1 1 1 1 AAA ATPase domain AAA_17 PF13207.1 gi|313117403|ref|YP_004044386.1| - 0.0063 17.3 0.6 0.16 12.7 0.1 2.4 2 0 0 2 2 2 1 AAA domain AAA_30 PF13604.1 gi|313117403|ref|YP_004044386.1| - 0.013 15.0 0.0 0.04 13.5 0.0 1.8 1 1 0 1 1 1 0 AAA domain MobB PF03205.9 gi|313117403|ref|YP_004044386.1| - 0.015 14.9 0.0 0.028 14.1 0.0 1.5 1 0 0 1 1 1 0 Molybdopterin guanine dinucleotide synthesis protein B ArgK PF03308.11 gi|313117403|ref|YP_004044386.1| - 0.02 13.6 0.0 0.027 13.2 0.0 1.2 1 0 0 1 1 1 0 ArgK protein AAA_33 PF13671.1 gi|313117403|ref|YP_004044386.1| - 0.031 14.1 0.1 0.055 13.3 0.1 1.7 1 1 0 1 1 1 0 AAA domain MutS_V PF00488.16 gi|313117403|ref|YP_004044386.1| - 0.036 13.4 0.0 0.055 12.8 0.0 1.2 1 0 0 1 1 1 0 MutS domain V AAA_19 PF13245.1 gi|313117403|ref|YP_004044386.1| - 0.054 13.2 0.0 0.16 11.7 0.0 1.8 1 0 0 1 1 1 0 Part of AAA domain DUF258 PF03193.11 gi|313117403|ref|YP_004044386.1| - 0.072 12.2 0.0 0.1 11.7 0.0 1.3 1 0 0 1 1 1 0 Protein of unknown function, DUF258 Arch_ATPase PF01637.13 gi|313117403|ref|YP_004044386.1| - 0.072 12.7 0.0 0.11 12.2 0.0 1.3 1 0 0 1 1 1 0 Archaeal ATPase DUF87 PF01935.12 gi|313117403|ref|YP_004044386.1| - 0.073 12.8 0.2 0.19 11.4 0.0 1.7 2 0 0 2 2 2 0 Domain of unknown function DUF87 NTPase_1 PF03266.10 gi|313117403|ref|YP_004044386.1| - 0.087 12.5 0.0 0.34 10.6 0.0 1.9 1 1 0 1 1 1 0 NTPase NACHT PF05729.7 gi|313117403|ref|YP_004044386.1| - 0.088 12.4 0.1 0.15 11.7 0.1 1.3 1 0 0 1 1 1 0 NACHT domain AAA_25 PF13481.1 gi|313117403|ref|YP_004044386.1| - 0.1 12.0 0.1 0.34 10.2 0.0 1.8 2 0 0 2 2 2 0 AAA domain Septin PF00735.13 gi|313117403|ref|YP_004044386.1| - 0.13 11.2 0.0 13 4.6 0.0 2.1 2 0 0 2 2 2 0 Septin ABC-3 PF00950.12 gi|313117404|ref|YP_004044387.1| - 1.7e-56 191.3 40.4 2e-56 191.1 28.0 1.0 1 0 0 1 1 1 1 ABC 3 transport family FecCD PF01032.13 gi|313117404|ref|YP_004044387.1| - 0.00049 19.0 36.4 0.00049 19.0 25.2 1.9 1 1 0 2 2 2 1 FecCD transport family DUF2407_C PF13373.1 gi|313117404|ref|YP_004044387.1| - 0.17 11.8 0.9 0.46 10.3 0.6 1.7 1 0 0 1 1 1 0 DUF2407 C-terminal domain Fe_dep_repr_C PF02742.10 gi|313117405|ref|YP_004044388.1| - 1.3e-19 69.6 0.3 2.7e-19 68.6 0.2 1.6 1 0 0 1 1 1 1 Iron dependent repressor, metal binding and dimerisation domain Fe_dep_repress PF01325.14 gi|313117405|ref|YP_004044388.1| - 8.5e-17 60.8 0.1 1.7e-16 59.8 0.0 1.5 1 0 0 1 1 1 1 Iron dependent repressor, N-terminal DNA binding domain MarR_2 PF12802.2 gi|313117405|ref|YP_004044388.1| - 4.8e-12 45.3 0.1 6.2e-10 38.6 0.0 2.8 2 0 0 2 2 2 1 MarR family MarR PF01047.17 gi|313117405|ref|YP_004044388.1| - 8.4e-09 35.0 0.3 3e-08 33.2 0.0 1.9 2 0 0 2 2 2 1 MarR family HTH_Crp_2 PF13545.1 gi|313117405|ref|YP_004044388.1| - 1.3e-08 34.4 0.5 3e-08 33.3 0.0 1.8 2 0 0 2 2 1 1 Crp-like helix-turn-helix domain FeoA PF04023.9 gi|313117405|ref|YP_004044388.1| - 1.6e-08 34.3 0.1 3.5e-08 33.2 0.1 1.6 1 0 0 1 1 1 1 FeoA domain HTH_24 PF13412.1 gi|313117405|ref|YP_004044388.1| - 4e-08 32.5 0.1 8.3e-08 31.4 0.0 1.6 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_IclR PF09339.5 gi|313117405|ref|YP_004044388.1| - 5.8e-08 32.2 6.2 2e-07 30.4 0.1 3.3 4 0 0 4 4 4 1 IclR helix-turn-helix domain HTH_20 PF12840.2 gi|313117405|ref|YP_004044388.1| - 8.6e-08 31.8 0.1 4.7e-06 26.3 0.0 2.7 2 1 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.14 gi|313117405|ref|YP_004044388.1| - 5.9e-06 25.8 0.1 3.3e-05 23.5 0.0 2.2 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB HTH_11 PF08279.7 gi|313117405|ref|YP_004044388.1| - 7.4e-06 25.5 0.1 1.2e-05 24.8 0.1 1.3 1 0 0 1 1 1 1 HTH domain HTH_27 PF13463.1 gi|313117405|ref|YP_004044388.1| - 1.5e-05 25.2 0.1 4.7e-05 23.6 0.1 1.9 1 0 0 1 1 1 1 Winged helix DNA-binding domain Crp PF00325.15 gi|313117405|ref|YP_004044388.1| - 2.3e-05 23.7 0.8 7.3e-05 22.1 0.1 2.0 2 0 0 2 2 2 1 Bacterial regulatory proteins, crp family Sigma70_r4 PF04545.11 gi|313117405|ref|YP_004044388.1| - 8.3e-05 21.8 0.1 0.27 10.5 0.0 2.9 3 0 0 3 3 3 2 Sigma-70, region 4 Rrf2 PF02082.15 gi|313117405|ref|YP_004044388.1| - 8.6e-05 22.5 0.1 0.00051 20.1 0.0 2.2 2 0 0 2 2 2 1 Transcriptional regulator GntR PF00392.16 gi|313117405|ref|YP_004044388.1| - 0.00034 19.9 0.1 0.00065 19.0 0.0 1.5 1 0 0 1 1 1 1 Bacterial regulatory proteins, gntR family HTH_23 PF13384.1 gi|313117405|ref|YP_004044388.1| - 0.00034 20.1 0.0 0.0011 18.5 0.0 2.0 2 0 0 2 2 1 1 Homeodomain-like domain HTH_CodY PF08222.6 gi|313117405|ref|YP_004044388.1| - 0.00063 19.0 0.3 0.0015 17.8 0.1 1.7 2 0 0 2 2 1 1 CodY helix-turn-helix domain HTH_AsnC-type PF13404.1 gi|313117405|ref|YP_004044388.1| - 0.00087 18.7 0.1 0.0026 17.2 0.1 1.8 1 0 0 1 1 1 1 AsnC-type helix-turn-helix domain HTH_36 PF13730.1 gi|313117405|ref|YP_004044388.1| - 0.0017 18.4 0.0 0.0027 17.7 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|313117405|ref|YP_004044388.1| - 0.0019 17.8 0.0 0.0056 16.3 0.0 1.8 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family FeoC PF09012.5 gi|313117405|ref|YP_004044388.1| - 0.0034 17.0 0.0 0.009 15.6 0.0 1.7 2 0 0 2 2 1 1 FeoC like transcriptional regulator Put_DNA-bind_N PF06971.8 gi|313117405|ref|YP_004044388.1| - 0.0064 16.2 0.1 0.018 14.8 0.1 1.7 1 0 0 1 1 1 1 Putative DNA-binding protein N-terminus HTH_38 PF13936.1 gi|313117405|ref|YP_004044388.1| - 0.008 15.7 0.4 0.042 13.3 0.0 2.2 2 0 0 2 2 2 1 Helix-turn-helix domain FaeA PF04703.7 gi|313117405|ref|YP_004044388.1| - 0.012 15.6 0.0 0.025 14.7 0.0 1.5 1 0 0 1 1 1 0 FaeA-like protein TFIIE_alpha PF02002.12 gi|313117405|ref|YP_004044388.1| - 0.015 14.8 0.0 0.028 13.9 0.0 1.5 1 0 0 1 1 1 0 TFIIE alpha subunit DUF2250 PF10007.4 gi|313117405|ref|YP_004044388.1| - 0.021 14.7 0.0 0.043 13.7 0.0 1.6 1 0 0 1 1 1 0 Uncharacterized protein conserved in archaea (DUF2250) Sigma70_r3 PF04539.11 gi|313117405|ref|YP_004044388.1| - 0.022 14.6 0.5 0.078 12.8 0.0 2.1 2 0 0 2 2 2 0 Sigma-70 region 3 TetR_N PF00440.18 gi|313117405|ref|YP_004044388.1| - 0.025 14.2 0.2 0.72 9.5 0.0 2.3 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family DUF4423 PF14394.1 gi|313117405|ref|YP_004044388.1| - 0.03 13.8 0.0 0.048 13.1 0.0 1.4 1 0 0 1 1 1 0 Domain of unknown function (DUF4423) HTH_29 PF13551.1 gi|313117405|ref|YP_004044388.1| - 0.031 14.4 0.0 0.053 13.6 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn helix LexA_DNA_bind PF01726.11 gi|313117405|ref|YP_004044388.1| - 0.034 13.6 0.0 0.14 11.7 0.0 2.1 2 0 0 2 2 1 0 LexA DNA binding domain EAP30 PF04157.11 gi|313117405|ref|YP_004044388.1| - 0.044 12.9 0.0 0.074 12.1 0.0 1.3 1 0 0 1 1 1 0 EAP30/Vps36 family HTH_34 PF13601.1 gi|313117405|ref|YP_004044388.1| - 0.049 13.6 0.0 0.098 12.6 0.0 1.5 1 0 0 1 1 1 0 Winged helix DNA-binding domain HTH_3 PF01381.17 gi|313117405|ref|YP_004044388.1| - 0.067 13.0 0.0 0.59 10.0 0.0 2.5 2 0 0 2 2 2 0 Helix-turn-helix Phage_rep_O PF04492.8 gi|313117405|ref|YP_004044388.1| - 0.07 13.3 0.0 0.15 12.3 0.0 1.5 1 0 0 1 1 1 0 Bacteriophage replication protein O LacI PF00356.16 gi|313117405|ref|YP_004044388.1| - 0.082 12.5 0.6 0.19 11.3 0.1 1.8 2 0 0 2 2 1 0 Bacterial regulatory proteins, lacI family Sigma70_r4_2 PF08281.7 gi|313117405|ref|YP_004044388.1| - 0.09 12.2 0.0 0.41 10.1 0.0 2.2 1 0 0 1 1 1 0 Sigma-70, region 4 HTH_10 PF04967.7 gi|313117405|ref|YP_004044388.1| - 0.14 11.7 0.1 0.55 9.8 0.0 2.1 2 0 0 2 2 1 0 HTH DNA binding domain HTH_28 PF13518.1 gi|313117405|ref|YP_004044388.1| - 0.15 12.1 0.0 0.53 10.3 0.0 2.0 2 0 0 2 2 1 0 Helix-turn-helix domain Apo-CIII PF05778.7 gi|313117405|ref|YP_004044388.1| - 0.15 11.4 0.1 0.47 9.8 0.0 1.9 2 0 0 2 2 1 0 Apolipoprotein CIII (Apo-CIII) Topoisom_bac PF01131.15 gi|313117405|ref|YP_004044388.1| - 0.16 10.8 0.0 0.21 10.3 0.0 1.2 1 0 0 1 1 1 0 DNA topoisomerase PgpA PF04608.8 gi|313117406|ref|YP_004044389.1| - 2.7e-29 101.7 1.6 3.1e-29 101.6 1.1 1.0 1 0 0 1 1 1 1 Phosphatidylglycerophosphatase A ABC_tran PF00005.22 gi|313117407|ref|YP_004044390.1| - 6.3e-31 107.5 0.0 1.2e-30 106.6 0.0 1.4 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|313117407|ref|YP_004044390.1| - 2.3e-08 34.3 0.1 0.0038 17.2 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA PF00004.24 gi|313117407|ref|YP_004044390.1| - 4.7e-06 26.8 0.4 7.4e-05 22.9 0.1 2.6 1 1 1 2 2 2 1 ATPase family associated with various cellular activities (AAA) AAA_16 PF13191.1 gi|313117407|ref|YP_004044390.1| - 1.6e-05 24.9 0.1 0.0003 20.8 0.0 2.2 2 0 0 2 2 2 1 AAA ATPase domain AAA_5 PF07728.9 gi|313117407|ref|YP_004044390.1| - 0.0012 18.5 1.2 0.025 14.3 0.0 2.3 2 0 0 2 2 2 1 AAA domain (dynein-related subfamily) AAA_22 PF13401.1 gi|313117407|ref|YP_004044390.1| - 0.0028 17.7 0.3 0.011 15.8 0.2 2.0 1 1 0 1 1 1 1 AAA domain DUF258 PF03193.11 gi|313117407|ref|YP_004044390.1| - 0.0047 16.1 0.0 0.0086 15.2 0.0 1.4 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_33 PF13671.1 gi|313117407|ref|YP_004044390.1| - 0.008 16.0 0.6 0.025 14.4 0.4 2.0 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|313117407|ref|YP_004044390.1| - 0.011 16.5 0.4 0.04 14.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_25 PF13481.1 gi|313117407|ref|YP_004044390.1| - 0.012 15.0 0.2 0.078 12.3 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_29 PF13555.1 gi|313117407|ref|YP_004044390.1| - 0.015 14.8 0.0 0.036 13.5 0.0 1.6 1 0 0 1 1 1 0 P-loop containing region of AAA domain IstB_IS21 PF01695.12 gi|313117407|ref|YP_004044390.1| - 0.015 14.6 0.0 0.03 13.7 0.0 1.4 1 0 0 1 1 1 0 IstB-like ATP binding protein NB-ARC PF00931.17 gi|313117407|ref|YP_004044390.1| - 0.022 13.6 0.0 0.035 12.9 0.0 1.2 1 0 0 1 1 1 0 NB-ARC domain SbcCD_C PF13558.1 gi|313117407|ref|YP_004044390.1| - 0.024 14.5 0.1 0.11 12.4 0.1 2.0 1 1 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_28 PF13521.1 gi|313117407|ref|YP_004044390.1| - 0.028 14.3 0.8 0.091 12.7 0.1 2.0 2 0 0 2 2 2 0 AAA domain ABC_ATPase PF09818.4 gi|313117407|ref|YP_004044390.1| - 0.028 13.0 0.1 0.083 11.4 0.0 1.7 2 0 0 2 2 2 0 Predicted ATPase of the ABC class AAA_14 PF13173.1 gi|313117407|ref|YP_004044390.1| - 0.033 14.1 0.3 0.49 10.3 0.0 2.5 2 1 0 2 2 2 0 AAA domain MMR_HSR1 PF01926.18 gi|313117407|ref|YP_004044390.1| - 0.033 14.1 0.0 0.068 13.1 0.0 1.5 1 1 0 1 1 1 0 50S ribosome-binding GTPase NACHT PF05729.7 gi|313117407|ref|YP_004044390.1| - 0.041 13.5 0.0 0.094 12.3 0.0 1.5 1 0 0 1 1 1 0 NACHT domain AAA_15 PF13175.1 gi|313117407|ref|YP_004044390.1| - 0.042 12.9 0.0 0.4 9.6 0.0 1.9 2 0 0 2 2 2 0 AAA ATPase domain Arch_ATPase PF01637.13 gi|313117407|ref|YP_004044390.1| - 0.048 13.3 0.0 0.14 11.8 0.0 1.7 2 0 0 2 2 2 0 Archaeal ATPase UPF0079 PF02367.12 gi|313117407|ref|YP_004044390.1| - 0.06 12.9 0.0 0.11 12.1 0.0 1.4 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 MobB PF03205.9 gi|313117407|ref|YP_004044390.1| - 0.064 12.9 0.2 0.24 11.0 0.0 2.0 3 0 0 3 3 2 0 Molybdopterin guanine dinucleotide synthesis protein B PduV-EutP PF10662.4 gi|313117407|ref|YP_004044390.1| - 0.068 12.6 0.0 0.14 11.6 0.0 1.4 1 0 0 1 1 1 0 Ethanolamine utilisation - propanediol utilisation AAA_23 PF13476.1 gi|313117407|ref|YP_004044390.1| - 0.077 13.3 0.0 0.14 12.4 0.0 1.4 1 0 0 1 1 1 0 AAA domain ATP-synt_ab PF00006.20 gi|313117407|ref|YP_004044390.1| - 0.084 12.3 0.1 0.082 12.3 0.1 1.3 1 1 0 1 1 1 0 ATP synthase alpha/beta family, nucleotide-binding domain Mg_chelatase PF01078.16 gi|313117407|ref|YP_004044390.1| - 0.085 12.0 0.0 0.19 10.8 0.0 1.5 2 0 0 2 2 1 0 Magnesium chelatase, subunit ChlI AAA_18 PF13238.1 gi|313117407|ref|YP_004044390.1| - 0.088 13.1 0.1 0.18 12.1 0.0 1.6 1 0 0 1 1 1 0 AAA domain SMC_N PF02463.14 gi|313117407|ref|YP_004044390.1| - 0.089 12.0 0.0 5.6 6.1 0.0 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain Rad17 PF03215.10 gi|313117407|ref|YP_004044390.1| - 0.1 11.2 0.0 0.15 10.7 0.0 1.1 1 0 0 1 1 1 0 Rad17 cell cycle checkpoint protein AAA_19 PF13245.1 gi|313117407|ref|YP_004044390.1| - 0.21 11.3 1.2 0.71 9.6 0.2 2.3 2 1 1 3 3 3 0 Part of AAA domain BPD_transp_1 PF00528.17 gi|313117408|ref|YP_004044391.1| - 8.9e-16 57.9 11.0 8.9e-16 57.9 7.6 1.6 2 0 0 2 2 2 1 Binding-protein-dependent transport system inner membrane component YbjM PF11045.3 gi|313117408|ref|YP_004044391.1| - 0.13 12.0 5.1 5 6.9 0.1 2.6 2 1 0 2 2 2 0 Putative inner membrane protein of Enterobacteriaceae Oleosin PF01277.12 gi|313117408|ref|YP_004044391.1| - 1.5 8.4 5.8 0.27 10.8 1.3 1.8 2 0 0 2 2 2 0 Oleosin NMT1_2 PF13379.1 gi|313117409|ref|YP_004044392.1| - 4.4e-39 134.3 0.9 7.9e-39 133.5 0.2 1.6 2 0 0 2 2 2 1 NMT1-like family Phosphonate-bd PF12974.2 gi|313117409|ref|YP_004044392.1| - 0.015 14.6 0.1 0.03 13.7 0.1 1.5 1 0 0 1 1 1 0 ABC transporter, phosphonate, periplasmic substrate-binding protein DS PF01916.12 gi|313117410|ref|YP_004044393.1| - 4.8e-99 331.2 0.0 5.5e-99 331.0 0.0 1.0 1 0 0 1 1 1 1 Deoxyhypusine synthase ABC_tran PF00005.22 gi|313117411|ref|YP_004044394.1| - 1.2e-29 103.3 0.0 2.7e-29 102.2 0.0 1.6 2 0 0 2 2 2 1 ABC transporter AAA_21 PF13304.1 gi|313117411|ref|YP_004044394.1| - 7.5e-13 49.0 1.5 3.2e-07 30.6 0.0 2.6 2 1 1 3 3 3 2 AAA domain AAA_29 PF13555.1 gi|313117411|ref|YP_004044394.1| - 0.0011 18.4 0.3 0.0025 17.3 0.2 1.6 1 0 0 1 1 1 1 P-loop containing region of AAA domain AAA_23 PF13476.1 gi|313117411|ref|YP_004044394.1| - 0.0022 18.3 0.6 0.0035 17.6 0.4 1.7 1 1 0 1 1 1 1 AAA domain AAA_15 PF13175.1 gi|313117411|ref|YP_004044394.1| - 0.0053 15.8 0.0 5.6 5.8 0.0 3.0 3 0 0 3 3 3 1 AAA ATPase domain AAA_16 PF13191.1 gi|313117411|ref|YP_004044394.1| - 0.0076 16.2 0.3 0.016 15.2 0.1 1.8 1 1 1 2 2 2 1 AAA ATPase domain Zeta_toxin PF06414.7 gi|313117411|ref|YP_004044394.1| - 0.013 14.6 0.0 0.02 13.9 0.0 1.4 1 0 0 1 1 1 0 Zeta toxin AAA PF00004.24 gi|313117411|ref|YP_004044394.1| - 0.026 14.7 0.0 0.12 12.5 0.0 2.1 2 1 0 2 2 2 0 ATPase family associated with various cellular activities (AAA) AAA_22 PF13401.1 gi|313117411|ref|YP_004044394.1| - 0.029 14.4 2.7 0.12 12.5 0.7 2.4 2 1 0 2 2 1 0 AAA domain UPF0079 PF02367.12 gi|313117411|ref|YP_004044394.1| - 0.035 13.7 0.1 0.086 12.4 0.1 1.6 1 0 0 1 1 1 0 Uncharacterised P-loop hydrolase UPF0079 NTPase_1 PF03266.10 gi|313117411|ref|YP_004044394.1| - 0.041 13.6 0.2 0.11 12.1 0.0 1.8 2 0 0 2 2 2 0 NTPase AAA_19 PF13245.1 gi|313117411|ref|YP_004044394.1| - 0.049 13.3 0.1 0.12 12.1 0.1 1.7 1 0 0 1 1 1 0 Part of AAA domain SMC_N PF02463.14 gi|313117411|ref|YP_004044394.1| - 0.066 12.4 0.4 0.26 10.4 0.3 1.9 1 1 0 1 1 1 0 RecF/RecN/SMC N terminal domain SRP54 PF00448.17 gi|313117411|ref|YP_004044394.1| - 0.069 12.5 0.0 0.13 11.6 0.0 1.5 1 0 0 1 1 1 0 SRP54-type protein, GTPase domain AAA_14 PF13173.1 gi|313117411|ref|YP_004044394.1| - 0.076 12.9 0.5 2.9 7.7 0.0 2.9 3 0 0 3 3 3 0 AAA domain AAA_33 PF13671.1 gi|313117411|ref|YP_004044394.1| - 0.094 12.5 0.0 0.2 11.5 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_30 PF13604.1 gi|313117411|ref|YP_004044394.1| - 0.12 11.9 0.1 0.29 10.7 0.1 1.6 1 0 0 1 1 1 0 AAA domain AAA_17 PF13207.1 gi|313117411|ref|YP_004044394.1| - 0.19 12.5 2.3 2.5 8.9 1.6 2.5 1 1 0 1 1 1 0 AAA domain AAA_25 PF13481.1 gi|313117411|ref|YP_004044394.1| - 0.37 10.1 4.2 2 7.8 1.6 2.8 1 1 1 2 2 2 0 AAA domain AAA_10 PF12846.2 gi|313117411|ref|YP_004044394.1| - 0.37 10.1 2.5 1.8 7.9 1.7 1.9 1 1 0 1 1 1 0 AAA-like domain ABC2_membrane_3 PF12698.2 gi|313117412|ref|YP_004044395.1| - 4e-05 22.8 29.1 0.0003 19.9 20.2 1.9 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_2 PF12679.2 gi|313117412|ref|YP_004044395.1| - 0.73 8.6 22.9 3.2 6.5 15.8 2.1 1 1 0 1 1 1 0 ABC-2 family transporter protein PAS_3 PF08447.6 gi|313117413|ref|YP_004044396.1| - 1.5e-31 108.3 2.1 1.2e-18 67.0 0.2 2.6 2 0 0 2 2 2 2 PAS fold HATPase_c PF02518.21 gi|313117413|ref|YP_004044396.1| - 9.3e-21 73.6 0.1 2e-20 72.5 0.0 1.5 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_9 PF13426.1 gi|313117413|ref|YP_004044396.1| - 4.4e-19 68.7 1.9 5.8e-08 33.0 0.0 3.8 4 0 0 4 4 4 3 PAS domain HisKA PF00512.20 gi|313117413|ref|YP_004044396.1| - 7.3e-15 54.7 1.5 2.4e-14 53.0 0.0 2.7 3 0 0 3 3 3 1 His Kinase A (phospho-acceptor) domain PAS_4 PF08448.5 gi|313117413|ref|YP_004044396.1| - 1.2e-13 51.0 5.2 9.5e-06 25.6 0.2 3.7 3 0 0 3 3 3 2 PAS fold GAF_2 PF13185.1 gi|313117413|ref|YP_004044396.1| - 6.9e-08 33.1 0.3 1.9e-07 31.7 0.2 1.8 1 0 0 1 1 1 1 GAF domain PAS PF00989.19 gi|313117413|ref|YP_004044396.1| - 6.1e-06 25.9 3.4 0.0058 16.3 0.1 3.3 4 0 0 4 4 4 2 PAS fold PAS_8 PF13188.1 gi|313117413|ref|YP_004044396.1| - 1.6e-05 24.5 0.0 0.0058 16.4 0.0 3.1 2 0 0 2 2 2 1 PAS domain HATPase_c_3 PF13589.1 gi|313117413|ref|YP_004044396.1| - 0.00012 21.7 0.0 0.00033 20.3 0.0 1.8 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GAF_3 PF13492.1 gi|313117413|ref|YP_004044396.1| - 0.00038 20.5 0.1 0.001 19.1 0.0 1.8 2 0 0 2 2 1 1 GAF domain PAS_7 PF12860.2 gi|313117413|ref|YP_004044396.1| - 0.0018 18.2 1.9 0.035 14.1 0.0 3.1 3 0 0 3 3 3 1 PAS fold DUF2930 PF11152.3 gi|313117413|ref|YP_004044396.1| - 0.0071 15.5 0.0 0.018 14.1 0.0 1.7 2 0 0 2 2 2 1 Protein of unknown function (DUF2930) Retrotrans_gag PF03732.12 gi|313117413|ref|YP_004044396.1| - 0.0078 16.2 1.4 0.86 9.7 0.1 2.9 3 0 0 3 3 3 1 Retrotransposon gag protein PAS_4 PF08448.5 gi|313117414|ref|YP_004044397.1| - 6.8e-30 103.3 6.0 4e-14 52.5 0.1 4.0 3 1 0 3 3 3 3 PAS fold PAS_9 PF13426.1 gi|313117414|ref|YP_004044397.1| - 8.8e-19 67.8 0.1 2.3e-08 34.3 0.0 2.8 2 0 0 2 2 2 2 PAS domain Response_reg PF00072.19 gi|313117414|ref|YP_004044397.1| - 5.7e-15 55.2 0.3 1.1e-14 54.3 0.2 1.5 1 0 0 1 1 1 1 Response regulator receiver domain PAS PF00989.19 gi|313117414|ref|YP_004044397.1| - 2.1e-14 53.2 0.5 5.3e-06 26.1 0.0 3.7 2 1 0 2 2 2 2 PAS fold PAS_8 PF13188.1 gi|313117414|ref|YP_004044397.1| - 2.4e-12 46.2 0.2 0.00024 20.8 0.0 4.2 4 1 1 5 5 5 2 PAS domain GAF_3 PF13492.1 gi|313117414|ref|YP_004044397.1| - 1.3e-11 44.7 0.1 1.4e-10 41.3 0.0 2.4 2 0 0 2 2 2 1 GAF domain GAF_2 PF13185.1 gi|313117414|ref|YP_004044397.1| - 3.8e-05 24.2 1.8 9.3e-05 22.9 0.2 2.4 3 0 0 3 3 3 1 GAF domain OKR_DC_1_N PF03709.10 gi|313117414|ref|YP_004044397.1| - 9.6e-05 22.4 0.4 0.00097 19.1 0.2 2.6 2 0 0 2 2 2 1 Orn/Lys/Arg decarboxylase, N-terminal domain PAS_7 PF12860.2 gi|313117414|ref|YP_004044397.1| - 0.072 13.0 0.2 3.1 7.8 0.0 3.3 2 2 0 2 2 2 0 PAS fold GAF_2 PF13185.1 gi|313117416|ref|YP_004044399.1| - 3.9e-26 92.3 3.0 3e-17 63.4 0.0 3.4 3 1 1 4 4 4 2 GAF domain PAS_9 PF13426.1 gi|313117416|ref|YP_004044399.1| - 4.7e-23 81.5 0.1 1.7e-13 50.8 0.0 3.0 2 0 0 2 2 2 2 PAS domain GAF PF01590.21 gi|313117416|ref|YP_004044399.1| - 2.4e-22 79.7 0.2 4e-13 49.7 0.1 2.9 2 0 0 2 2 2 2 GAF domain HTH_10 PF04967.7 gi|313117416|ref|YP_004044399.1| - 3e-21 74.7 0.0 9.3e-21 73.1 0.0 1.9 1 0 0 1 1 1 1 HTH DNA binding domain PAS_4 PF08448.5 gi|313117416|ref|YP_004044399.1| - 4.1e-21 75.0 1.3 9.2e-10 38.5 0.3 3.0 2 0 0 2 2 2 2 PAS fold PAS PF00989.19 gi|313117416|ref|YP_004044399.1| - 4.3e-20 71.5 0.1 8e-11 41.7 0.0 2.8 2 0 0 2 2 2 2 PAS fold GAF_3 PF13492.1 gi|313117416|ref|YP_004044399.1| - 2.1e-14 53.7 0.0 6.6e-06 26.2 0.0 3.0 2 0 0 2 2 2 2 GAF domain PAS_3 PF08447.6 gi|313117416|ref|YP_004044399.1| - 1.9e-09 37.5 0.0 4.8e-05 23.3 0.0 2.8 2 0 0 2 2 2 2 PAS fold PAS_8 PF13188.1 gi|313117416|ref|YP_004044399.1| - 2.5e-09 36.6 0.0 1.7e-05 24.4 0.0 2.9 2 0 0 2 2 2 2 PAS domain PAS_7 PF12860.2 gi|313117416|ref|YP_004044399.1| - 3.9e-05 23.6 4.0 0.044 13.7 0.0 3.4 4 0 0 4 4 3 2 PAS fold HTH_20 PF12840.2 gi|313117416|ref|YP_004044399.1| - 0.00038 20.1 0.1 0.019 14.7 0.1 2.7 2 0 0 2 2 2 1 Helix-turn-helix domain TrmB PF01978.14 gi|313117416|ref|YP_004044399.1| - 0.0088 15.7 0.0 0.063 12.9 0.0 2.4 2 0 0 2 2 2 1 Sugar-specific transcriptional regulator TrmB Sigma70_r4_2 PF08281.7 gi|313117416|ref|YP_004044399.1| - 0.012 15.0 0.0 1.1 8.7 0.0 2.6 2 0 0 2 2 2 0 Sigma-70, region 4 HTH_22 PF13309.1 gi|313117416|ref|YP_004044399.1| - 0.016 14.9 0.0 0.48 10.2 0.0 3.1 3 0 0 3 3 3 0 HTH domain HTH_IclR PF09339.5 gi|313117416|ref|YP_004044399.1| - 0.029 13.9 0.6 0.35 10.5 0.2 2.5 2 0 0 2 2 2 0 IclR helix-turn-helix domain TetR_N PF00440.18 gi|313117416|ref|YP_004044399.1| - 0.1 12.2 0.0 3.1 7.4 0.0 2.5 2 0 0 2 2 2 0 Bacterial regulatory proteins, tetR family MarR_2 PF12802.2 gi|313117416|ref|YP_004044399.1| - 0.23 11.1 4.1 4 7.1 0.0 3.2 3 1 0 3 3 2 0 MarR family CbiA PF01656.18 gi|313117418|ref|YP_004044401.1| - 3.1e-18 65.9 0.0 4.3e-18 65.4 0.0 1.2 1 0 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain AAA_31 PF13614.1 gi|313117418|ref|YP_004044401.1| - 3.1e-08 33.7 0.0 7.2e-08 32.5 0.0 1.7 1 1 0 1 1 1 1 AAA domain ArsA_ATPase PF02374.10 gi|313117418|ref|YP_004044401.1| - 5.4e-07 28.9 0.0 9.5e-07 28.1 0.0 1.3 1 0 0 1 1 1 1 Anion-transporting ATPase MipZ PF09140.6 gi|313117418|ref|YP_004044401.1| - 0.00097 18.2 0.0 0.023 13.7 0.0 2.2 1 1 0 2 2 2 1 ATPase MipZ Fer4_NifH PF00142.13 gi|313117418|ref|YP_004044401.1| - 0.0091 15.2 0.0 0.014 14.6 0.0 1.3 1 0 0 1 1 1 1 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family SRP54 PF00448.17 gi|313117418|ref|YP_004044401.1| - 0.0092 15.4 0.0 0.019 14.3 0.0 1.5 1 0 0 1 1 1 1 SRP54-type protein, GTPase domain AAA_10 PF12846.2 gi|313117418|ref|YP_004044401.1| - 0.013 14.9 0.0 0.48 9.8 0.0 2.2 1 1 1 2 2 2 0 AAA-like domain YhjQ PF06564.7 gi|313117418|ref|YP_004044401.1| - 0.025 13.9 0.0 0.041 13.2 0.0 1.3 1 0 0 1 1 1 0 YhjQ protein AAA_19 PF13245.1 gi|313117418|ref|YP_004044401.1| - 0.041 13.6 0.2 0.11 12.2 0.0 1.9 2 0 0 2 2 2 0 Part of AAA domain HD PF01966.17 gi|313117420|ref|YP_004044403.1| - 7.1e-11 42.1 0.9 1.2e-10 41.4 0.6 1.3 1 0 0 1 1 1 1 HD domain DUF4064 PF13273.1 gi|313117421|ref|YP_004044404.1| - 0.0003 20.8 1.7 0.00035 20.6 0.6 1.5 1 1 0 1 1 1 1 Protein of unknown function (DUF4064) Tetraspannin PF00335.15 gi|313117421|ref|YP_004044404.1| - 1.3 8.2 6.5 2.1 7.5 4.5 1.4 1 1 0 1 1 1 0 Tetraspanin family NMT1_2 PF13379.1 gi|313117422|ref|YP_004044405.1| - 1.7e-24 86.5 0.0 2.1e-24 86.3 0.0 1.1 1 0 0 1 1 1 1 NMT1-like family NMT1 PF09084.6 gi|313117422|ref|YP_004044405.1| - 3.2e-06 26.9 0.0 6.1e-06 25.9 0.0 1.4 1 1 0 1 1 1 1 NMT1/THI5 like Phosphonate-bd PF12974.2 gi|313117422|ref|YP_004044405.1| - 0.00028 20.3 0.0 0.00036 19.9 0.0 1.2 1 0 0 1 1 1 1 ABC transporter, phosphonate, periplasmic substrate-binding protein BPD_transp_1 PF00528.17 gi|313117423|ref|YP_004044406.1| - 3.4e-21 75.6 7.6 4.3e-21 75.2 5.3 1.2 1 0 0 1 1 1 1 Binding-protein-dependent transport system inner membrane component ABC_tran PF00005.22 gi|313117424|ref|YP_004044407.1| - 5.2e-32 111.0 0.0 7.7e-32 110.4 0.0 1.3 1 0 0 1 1 1 1 ABC transporter AAA_21 PF13304.1 gi|313117424|ref|YP_004044407.1| - 5.8e-07 29.7 0.0 0.006 16.5 0.0 2.1 2 0 0 2 2 2 2 AAA domain AAA_16 PF13191.1 gi|313117424|ref|YP_004044407.1| - 3.7e-05 23.7 0.0 7.3e-05 22.8 0.0 1.5 1 1 0 1 1 1 1 AAA ATPase domain AAA PF00004.24 gi|313117424|ref|YP_004044407.1| - 0.00077 19.6 0.1 0.0055 16.8 0.1 2.1 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) DUF258 PF03193.11 gi|313117424|ref|YP_004044407.1| - 0.0016 17.6 0.1 0.0026 16.9 0.1 1.3 1 0 0 1 1 1 1 Protein of unknown function, DUF258 AAA_22 PF13401.1 gi|313117424|ref|YP_004044407.1| - 0.0037 17.3 0.3 0.0071 16.4 0.2 1.8 1 1 0 1 1 1 1 AAA domain AAA_33 PF13671.1 gi|313117424|ref|YP_004044407.1| - 0.0037 17.1 0.2 0.0071 16.2 0.1 1.7 1 1 0 1 1 1 1 AAA domain AAA_17 PF13207.1 gi|313117424|ref|YP_004044407.1| - 0.011 16.5 0.0 0.02 15.6 0.0 1.6 1 0 0 1 1 1 0 AAA domain AAA_28 PF13521.1 gi|313117424|ref|YP_004044407.1| - 0.012 15.5 0.4 0.19 11.6 0.0 2.4 3 0 0 3 3 2 0 AAA domain AAA_15 PF13175.1 gi|313117424|ref|YP_004044407.1| - 0.019 14.0 0.0 0.31 10.0 0.0 2.0 2 0 0 2 2 2 0 AAA ATPase domain MobB PF03205.9 gi|313117424|ref|YP_004044407.1| - 0.019 14.6 0.3 0.053 13.2 0.2 1.7 2 0 0 2 2 2 0 Molybdopterin guanine dinucleotide synthesis protein B AAA_25 PF13481.1 gi|313117424|ref|YP_004044407.1| - 0.027 13.8 0.1 0.19 11.1 0.0 2.0 2 0 0 2 2 2 0 AAA domain SbcCD_C PF13558.1 gi|313117424|ref|YP_004044407.1| - 0.028 14.3 0.0 0.076 12.9 0.0 1.8 1 0 0 1 1 1 0 Putative exonuclease SbcCD, C subunit AAA_19 PF13245.1 gi|313117424|ref|YP_004044407.1| - 0.034 13.8 0.6 0.31 10.8 0.1 2.3 2 0 0 2 2 2 0 Part of AAA domain AAA_29 PF13555.1 gi|313117424|ref|YP_004044407.1| - 0.039 13.4 0.3 0.086 12.3 0.2 1.5 1 0 0 1 1 1 0 P-loop containing region of AAA domain Arch_ATPase PF01637.13 gi|313117424|ref|YP_004044407.1| - 0.048 13.3 0.0 0.1 12.3 0.0 1.4 1 0 0 1 1 1 0 Archaeal ATPase NB-ARC PF00931.17 gi|313117424|ref|YP_004044407.1| - 0.057 12.2 0.1 0.11 11.3 0.1 1.4 1 0 0 1 1 1 0 NB-ARC domain SMC_N PF02463.14 gi|313117424|ref|YP_004044407.1| - 0.064 12.4 0.1 3.5 6.8 0.1 2.1 2 0 0 2 2 2 0 RecF/RecN/SMC N terminal domain AAA_24 PF13479.1 gi|313117424|ref|YP_004044407.1| - 0.081 12.4 0.1 0.84 9.1 0.1 2.1 2 0 0 2 2 2 0 AAA domain Miro PF08477.8 gi|313117424|ref|YP_004044407.1| - 0.086 13.3 0.0 0.18 12.2 0.0 1.5 1 0 0 1 1 1 0 Miro-like protein AAA_30 PF13604.1 gi|313117424|ref|YP_004044407.1| - 0.098 12.2 0.1 0.57 9.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain AAA_14 PF13173.1 gi|313117424|ref|YP_004044407.1| - 0.11 12.3 0.1 0.33 10.8 0.1 1.8 2 0 0 2 2 2 0 AAA domain NACHT PF05729.7 gi|313117424|ref|YP_004044407.1| - 0.13 11.9 0.1 0.22 11.1 0.1 1.4 1 0 0 1 1 1 0 NACHT domain Zeta_toxin PF06414.7 gi|313117424|ref|YP_004044407.1| - 0.15 11.1 0.1 0.29 10.2 0.0 1.4 1 1 0 1 1 1 0 Zeta toxin AAA_23 PF13476.1 gi|313117424|ref|YP_004044407.1| - 0.2 11.9 0.2 0.34 11.2 0.2 1.3 1 0 0 1 1 1 0 AAA domain AMP-binding PF00501.23 gi|313117425|ref|YP_004044408.1| - 7.1e-93 311.2 0.1 9e-93 310.9 0.0 1.1 1 0 0 1 1 1 1 AMP-binding enzyme AMP-binding_C PF13193.1 gi|313117425|ref|YP_004044408.1| - 5.2e-17 62.5 0.4 5.2e-17 62.5 0.3 1.8 2 0 0 2 2 2 1 AMP-binding enzyme C-terminal domain Aconitase PF00330.15 gi|313117426|ref|YP_004044409.1| - 4.4e-135 450.7 0.0 7.4e-93 311.5 0.0 2.1 2 0 0 2 2 2 2 Aconitase family (aconitate hydratase) Aconitase_C PF00694.14 gi|313117426|ref|YP_004044409.1| - 3e-40 137.3 0.0 5.2e-40 136.5 0.0 1.4 1 0 0 1 1 1 1 Aconitase C-terminal domain DUF2244 PF10003.4 gi|313117428|ref|YP_004044411.1| - 1.5 8.2 9.8 3.2 7.1 1.4 2.7 3 0 0 3 3 3 0 Integral membrane protein (DUF2244) PAS_4 PF08448.5 gi|313117429|ref|YP_004044412.1| - 1.1e-38 131.6 8.6 1.9e-15 56.8 0.2 5.0 4 1 0 4 4 4 3 PAS fold PAS_9 PF13426.1 gi|313117429|ref|YP_004044412.1| - 1.1e-35 122.1 0.9 3.5e-15 56.2 0.0 4.0 3 0 0 3 3 3 3 PAS domain PAS PF00989.19 gi|313117429|ref|YP_004044412.1| - 2.6e-35 120.6 2.8 8.1e-17 61.0 0.0 3.8 3 0 0 3 3 3 3 PAS fold GAF_3 PF13492.1 gi|313117429|ref|YP_004044412.1| - 8.2e-20 71.2 0.1 1.7e-09 37.8 0.0 3.9 4 0 0 4 4 4 2 GAF domain HATPase_c PF02518.21 gi|313117429|ref|YP_004044412.1| - 8.8e-20 70.4 0.5 1.8e-19 69.4 0.3 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_8 PF13188.1 gi|313117429|ref|YP_004044412.1| - 6.2e-19 67.1 0.1 2.5e-06 27.1 0.0 3.8 3 0 0 3 3 3 3 PAS domain GAF_2 PF13185.1 gi|313117429|ref|YP_004044412.1| - 1.4e-18 67.8 0.6 7.7e-08 32.9 0.0 3.8 2 1 1 3 3 3 2 GAF domain Response_reg PF00072.19 gi|313117429|ref|YP_004044412.1| - 7.5e-13 48.4 0.3 7.5e-13 48.4 0.2 2.9 3 0 0 3 3 3 1 Response regulator receiver domain HisKA PF00512.20 gi|313117429|ref|YP_004044412.1| - 1.9e-12 46.9 0.2 1.9e-12 46.9 0.1 4.0 4 0 0 4 4 4 1 His Kinase A (phospho-acceptor) domain GAF PF01590.21 gi|313117429|ref|YP_004044412.1| - 1.4e-10 41.4 0.1 0.002 18.2 0.0 3.6 3 0 0 3 3 3 2 GAF domain PAS_3 PF08447.6 gi|313117429|ref|YP_004044412.1| - 0.00011 22.2 0.1 0.00078 19.4 0.0 2.5 2 0 0 2 2 2 1 PAS fold OKR_DC_1_N PF03709.10 gi|313117429|ref|YP_004044412.1| - 0.00061 19.8 0.5 0.0035 17.3 0.3 2.4 1 1 1 2 2 2 1 Orn/Lys/Arg decarboxylase, N-terminal domain HATPase_c_3 PF13589.1 gi|313117429|ref|YP_004044412.1| - 0.0018 17.9 0.0 0.0047 16.5 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PAS_7 PF12860.2 gi|313117429|ref|YP_004044412.1| - 0.002 18.1 2.8 0.37 10.8 0.0 5.1 4 3 0 4 4 4 1 PAS fold PAS_10 PF13596.1 gi|313117429|ref|YP_004044412.1| - 0.004 17.4 0.0 0.18 12.1 0.0 3.5 4 0 0 4 4 4 1 PAS domain Na_H_antiporter PF03553.9 gi|313117430|ref|YP_004044413.1| - 4.2e-65 219.7 26.7 7.5e-63 212.3 4.1 2.5 1 1 2 3 3 3 2 Na+/H+ antiporter family TAT_signal PF10518.4 gi|313117431|ref|YP_004044414.1| - 0.024 14.6 0.5 0.031 14.2 0.4 1.1 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence SDA1 PF05285.7 gi|313117431|ref|YP_004044414.1| - 0.059 12.6 5.5 0.057 12.7 3.8 1.0 1 0 0 1 1 1 0 SDA1 Trypan_PARP PF05887.6 gi|313117431|ref|YP_004044414.1| - 0.15 11.8 7.1 0.18 11.6 4.9 1.1 1 0 0 1 1 1 0 Procyclic acidic repetitive protein (PARP) TRAP_alpha PF03896.11 gi|313117431|ref|YP_004044414.1| - 0.23 10.4 1.6 0.24 10.3 1.1 1.0 1 0 0 1 1 1 0 Translocon-associated protein (TRAP), alpha subunit Prothymosin PF03247.9 gi|313117431|ref|YP_004044414.1| - 4 7.6 22.2 5.5 7.1 15.4 1.1 1 0 0 1 1 1 0 Prothymosin/parathymosin family Sigma70_ner PF04546.8 gi|313117431|ref|YP_004044414.1| - 6.6 6.2 8.1 8.4 5.9 5.6 1.1 1 0 0 1 1 1 0 Sigma-70, non-essential region Daxx PF03344.10 gi|313117431|ref|YP_004044414.1| - 7.1 4.9 11.0 8.1 4.7 7.6 1.0 1 0 0 1 1 1 0 Daxx Family Nop14 PF04147.7 gi|313117431|ref|YP_004044414.1| - 8.4 4.1 11.9 9.5 3.9 8.3 1.0 1 0 0 1 1 1 0 Nop14-like family adh_short PF00106.20 gi|313117432|ref|YP_004044415.1| - 9.2e-22 77.7 3.7 1.2e-21 77.3 2.6 1.1 1 0 0 1 1 1 1 short chain dehydrogenase adh_short_C2 PF13561.1 gi|313117432|ref|YP_004044415.1| - 2.2e-07 30.8 0.1 2.8e-07 30.5 0.1 1.1 1 0 0 1 1 1 1 Enoyl-(Acyl carrier protein) reductase KR PF08659.5 gi|313117432|ref|YP_004044415.1| - 2.6e-06 27.2 3.3 5.8e-06 26.0 2.3 1.5 1 1 0 1 1 1 1 KR domain Eno-Rase_NADH_b PF12242.3 gi|313117432|ref|YP_004044415.1| - 9.8e-05 22.0 0.4 0.00062 19.4 0.2 2.1 2 0 0 2 2 2 1 NAD(P)H binding domain of trans-2-enoyl-CoA reductase Epimerase PF01370.16 gi|313117432|ref|YP_004044415.1| - 0.0018 17.7 0.2 0.0031 16.9 0.1 1.4 1 0 0 1 1 1 1 NAD dependent epimerase/dehydratase family Patatin PF01734.17 gi|313117433|ref|YP_004044416.1| - 2.6e-15 56.8 2.9 5.8e-14 52.4 2.0 2.2 1 1 0 1 1 1 1 Patatin-like phospholipase Pyr_redox_2 PF07992.9 gi|313117434|ref|YP_004044417.1| - 3.2e-34 118.5 1.5 5.7e-34 117.7 1.0 1.4 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_dim PF02852.17 gi|313117434|ref|YP_004044417.1| - 4.2e-28 97.5 1.0 8.9e-28 96.5 0.7 1.5 1 0 0 1 1 1 1 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Pyr_redox PF00070.22 gi|313117434|ref|YP_004044417.1| - 2.9e-16 59.6 6.9 4.9e-15 55.6 0.2 3.4 2 1 1 3 3 3 1 Pyridine nucleotide-disulphide oxidoreductase Pyr_redox_3 PF13738.1 gi|313117434|ref|YP_004044417.1| - 2.5e-12 47.2 0.1 7.9e-10 39.1 0.0 2.2 2 0 0 2 2 2 2 Pyridine nucleotide-disulphide oxidoreductase K_oxygenase PF13434.1 gi|313117434|ref|YP_004044417.1| - 4.6e-07 29.0 0.0 0.00091 18.2 0.0 2.3 1 1 1 2 2 2 2 L-lysine 6-monooxygenase (NADPH-requiring) GIDA PF01134.17 gi|313117434|ref|YP_004044417.1| - 2.9e-06 26.4 5.4 9.5e-06 24.7 2.9 2.3 1 1 1 2 2 2 1 Glucose inhibited division protein A FAD_oxidored PF12831.2 gi|313117434|ref|YP_004044417.1| - 4.5e-05 22.7 1.3 0.0001 21.5 0.1 2.1 2 0 0 2 2 2 1 FAD dependent oxidoreductase FAD_binding_2 PF00890.19 gi|313117434|ref|YP_004044417.1| - 0.0054 15.6 2.1 0.0054 15.6 1.5 2.2 1 1 0 2 2 2 1 FAD binding domain DAO PF01266.19 gi|313117434|ref|YP_004044417.1| - 0.023 13.6 15.2 0.27 10.0 0.9 3.8 3 1 0 4 4 4 0 FAD dependent oxidoreductase 3HCDH_N PF02737.13 gi|313117434|ref|YP_004044417.1| - 0.036 13.6 1.8 3.5 7.2 0.1 2.4 2 0 0 2 2 2 0 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain XdhC_C PF13478.1 gi|313117434|ref|YP_004044417.1| - 0.046 14.0 0.2 0.33 11.2 0.0 2.3 2 0 0 2 2 2 0 XdhC Rossmann domain HI0933_like PF03486.9 gi|313117434|ref|YP_004044417.1| - 0.052 12.0 0.8 9.6 4.5 0.2 3.0 3 0 0 3 3 3 0 HI0933-like protein NAD_binding_8 PF13450.1 gi|313117434|ref|YP_004044417.1| - 1.7 8.7 5.0 12 6.0 0.1 3.3 3 0 0 3 3 3 0 NAD(P)-binding Rossmann-like domain MarR_2 PF12802.2 gi|313117435|ref|YP_004044418.1| - 7.3e-10 38.3 0.0 1.9e-09 37.0 0.0 1.7 1 0 0 1 1 1 1 MarR family HTH_IclR PF09339.5 gi|313117435|ref|YP_004044418.1| - 1.4e-08 34.2 0.0 5.5e-08 32.2 0.0 2.0 3 0 0 3 3 3 1 IclR helix-turn-helix domain TrmB PF01978.14 gi|313117435|ref|YP_004044418.1| - 5e-07 29.3 0.0 8.5e-07 28.5 0.0 1.3 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_20 PF12840.2 gi|313117435|ref|YP_004044418.1| - 5.2e-07 29.3 0.0 9.9e-07 28.4 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain MarR PF01047.17 gi|313117435|ref|YP_004044418.1| - 3.1e-06 26.7 0.0 1e-05 25.1 0.0 1.7 2 0 0 2 2 2 1 MarR family HTH_24 PF13412.1 gi|313117435|ref|YP_004044418.1| - 3.3e-06 26.3 0.0 8.1e-06 25.1 0.0 1.6 2 0 0 2 2 2 1 Winged helix-turn-helix DNA-binding HTH_5 PF01022.15 gi|313117435|ref|YP_004044418.1| - 4.3e-05 23.0 0.0 6.9e-05 22.4 0.0 1.3 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family HTH_27 PF13463.1 gi|313117435|ref|YP_004044418.1| - 0.00036 20.7 0.0 0.0023 18.2 0.0 2.0 2 0 0 2 2 2 1 Winged helix DNA-binding domain HTH_Crp_2 PF13545.1 gi|313117435|ref|YP_004044418.1| - 0.0025 17.5 0.0 0.0045 16.7 0.0 1.3 1 0 0 1 1 1 1 Crp-like helix-turn-helix domain HTH_36 PF13730.1 gi|313117435|ref|YP_004044418.1| - 0.0047 17.0 0.0 0.0071 16.4 0.0 1.3 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_31 PF13560.1 gi|313117435|ref|YP_004044418.1| - 0.067 13.3 0.0 0.2 11.9 0.0 1.8 2 0 0 2 2 1 0 Helix-turn-helix domain Fe_dep_repress PF01325.14 gi|313117435|ref|YP_004044418.1| - 0.079 12.9 0.0 0.34 10.8 0.0 1.9 2 0 0 2 2 2 0 Iron dependent repressor, N-terminal DNA binding domain HTH_23 PF13384.1 gi|313117435|ref|YP_004044418.1| - 0.079 12.6 0.0 0.15 11.7 0.0 1.4 1 0 0 1 1 1 0 Homeodomain-like domain HTH_17 PF12728.2 gi|313117435|ref|YP_004044418.1| - 0.097 12.9 0.0 0.16 12.2 0.0 1.5 1 0 0 1 1 1 0 Helix-turn-helix domain Desulfoferrod_N PF06397.7 gi|313117435|ref|YP_004044418.1| - 0.1 12.0 0.1 0.17 11.3 0.0 1.3 1 0 0 1 1 1 0 Desulfoferrodoxin, N-terminal domain GntR PF00392.16 gi|313117435|ref|YP_004044418.1| - 0.15 11.5 0.0 0.33 10.4 0.0 1.5 1 0 0 1 1 1 0 Bacterial regulatory proteins, gntR family TetR_C_6 PF13977.1 gi|313117436|ref|YP_004044419.1| - 5e-13 49.0 0.6 6.9e-13 48.6 0.4 1.3 1 0 0 1 1 1 1 Bacterial transcriptional repressor TetR_N PF00440.18 gi|313117436|ref|YP_004044419.1| - 9.9e-07 28.3 0.0 1.7e-06 27.5 0.0 1.4 1 0 0 1 1 1 1 Bacterial regulatory proteins, tetR family MatE PF01554.13 gi|313117437|ref|YP_004044420.1| - 4.8e-63 211.6 47.1 1.5e-34 118.9 9.0 2.9 3 0 0 3 3 3 2 MatE Polysacc_synt_C PF14667.1 gi|313117437|ref|YP_004044420.1| - 7.7e-06 25.7 33.4 4.5e-05 23.2 12.1 5.6 3 2 1 4 4 4 2 Polysaccharide biosynthesis C-terminal domain MVIN PF03023.9 gi|313117437|ref|YP_004044420.1| - 0.8 8.0 37.3 7 4.9 24.4 2.7 1 1 0 1 1 1 0 MviN-like protein NAD_binding_10 PF13460.1 gi|313117438|ref|YP_004044421.1| - 5.1e-23 82.0 0.0 9.3e-23 81.1 0.0 1.4 1 0 0 1 1 1 1 NADH(P)-binding NmrA PF05368.8 gi|313117438|ref|YP_004044421.1| - 6.1e-14 51.8 0.0 8.5e-14 51.3 0.0 1.2 1 0 0 1 1 1 1 NmrA-like family NAD_binding_4 PF07993.7 gi|313117438|ref|YP_004044421.1| - 0.0013 17.7 0.0 0.0023 16.9 0.0 1.4 1 0 0 1 1 1 1 Male sterility protein Epimerase PF01370.16 gi|313117438|ref|YP_004044421.1| - 0.0033 16.8 0.0 0.018 14.4 0.0 2.1 3 0 0 3 3 3 1 NAD dependent epimerase/dehydratase family 3Beta_HSD PF01073.14 gi|313117438|ref|YP_004044421.1| - 0.013 14.2 0.0 0.026 13.2 0.0 1.4 1 1 0 1 1 1 0 3-beta hydroxysteroid dehydrogenase/isomerase family HTH_23 PF13384.1 gi|313117438|ref|YP_004044421.1| - 0.017 14.7 0.0 0.037 13.7 0.0 1.5 1 0 0 1 1 1 0 Homeodomain-like domain GerE PF00196.14 gi|313117438|ref|YP_004044421.1| - 0.023 14.0 0.0 0.043 13.1 0.0 1.3 1 0 0 1 1 1 0 Bacterial regulatory proteins, luxR family adh_short PF00106.20 gi|313117438|ref|YP_004044421.1| - 0.028 14.3 0.1 0.079 12.8 0.0 1.7 2 0 0 2 2 2 0 short chain dehydrogenase Semialdhyde_dh PF01118.19 gi|313117438|ref|YP_004044421.1| - 0.039 14.2 0.0 0.13 12.5 0.0 1.9 2 0 0 2 2 2 0 Semialdehyde dehydrogenase, NAD binding domain RmlD_sub_bind PF04321.12 gi|313117438|ref|YP_004044421.1| - 0.05 12.4 0.0 0.092 11.6 0.0 1.4 1 0 0 1 1 1 0 RmlD substrate binding domain Usp PF00582.21 gi|313117439|ref|YP_004044422.1| - 1.7e-27 96.3 0.6 1.9e-27 96.1 0.4 1.0 1 0 0 1 1 1 1 Universal stress protein family ASCH PF04266.9 gi|313117440|ref|YP_004044423.1| - 0.0056 17.0 0.1 0.0086 16.4 0.1 1.3 1 0 0 1 1 1 1 ASCH domain Gifsy-2 PF13856.1 gi|313117440|ref|YP_004044423.1| - 0.066 13.3 0.0 0.095 12.8 0.0 1.2 1 0 0 1 1 1 0 ATP-binding sugar transporter from pro-phage Peptidase_S8 PF00082.17 gi|313117441|ref|YP_004044424.1| - 1.3e-57 195.0 8.1 2e-57 194.5 5.6 1.3 1 0 0 1 1 1 1 Subtilase family Inhibitor_I9 PF05922.11 gi|313117441|ref|YP_004044424.1| - 0.0013 19.2 0.1 0.0033 17.9 0.1 1.8 1 0 0 1 1 1 1 Peptidase inhibitor I9 DUF4225 PF13988.1 gi|313117441|ref|YP_004044424.1| - 0.025 14.0 0.1 0.05 13.0 0.1 1.5 1 0 0 1 1 1 0 Protein of unknown function (DUF4225) fn3 PF00041.16 gi|313117441|ref|YP_004044424.1| - 0.055 13.6 0.1 0.21 11.7 0.1 2.0 1 0 0 1 1 1 0 Fibronectin type III domain YHS PF04945.8 gi|313117442|ref|YP_004044425.1| - 1.1e-05 25.1 1.6 1.4e-05 24.8 0.4 1.7 2 0 0 2 2 2 1 YHS domain DUF2116 PF09889.4 gi|313117442|ref|YP_004044425.1| - 0.0039 16.9 0.4 0.43 10.4 0.1 2.1 2 0 0 2 2 2 1 Uncharacterized protein containing a Zn-ribbon (DUF2116) zf-FCS PF06467.9 gi|313117442|ref|YP_004044425.1| - 0.0047 16.5 4.4 0.025 14.1 3.1 1.9 1 1 0 1 1 1 1 MYM-type Zinc finger with FCS sequence motif DUF581 PF04570.9 gi|313117442|ref|YP_004044425.1| - 0.0061 15.8 0.9 0.02 14.1 0.1 1.9 2 0 0 2 2 2 1 Protein of unknown function (DUF581) Ecl1 PF12855.2 gi|313117442|ref|YP_004044425.1| - 0.016 14.5 1.2 0.029 13.6 0.8 1.5 1 1 0 1 1 1 0 Life-span regulatory factor NMD3 PF04981.8 gi|313117442|ref|YP_004044425.1| - 0.087 11.9 0.2 0.087 11.9 0.1 1.1 1 0 0 1 1 1 0 NMD3 family Arc_trans_TRASH PF08394.5 gi|313117442|ref|YP_004044425.1| - 0.13 12.4 0.1 1.2 9.3 0.0 2.0 2 0 0 2 2 2 0 Archaeal TRASH domain DUF4182 PF13790.1 gi|313117442|ref|YP_004044425.1| - 0.15 11.9 0.3 9.1 6.1 0.0 2.1 2 0 0 2 2 2 0 Domain of unknown function (DUF4182) zf-ribbon_3 PF13248.1 gi|313117442|ref|YP_004044425.1| - 0.79 9.0 4.3 3 7.1 3.0 2.0 1 1 0 1 1 1 0 zinc-ribbon domain DUF329 PF03884.9 gi|313117442|ref|YP_004044425.1| - 2.3 7.8 5.2 24 4.5 3.6 2.1 1 1 0 1 1 1 0 Domain of unknown function (DUF329) GAF_2 PF13185.1 gi|313117443|ref|YP_004044426.1| - 1e-28 100.6 0.3 2.1e-11 44.5 0.0 3.6 3 0 0 3 3 3 3 GAF domain HTH_10 PF04967.7 gi|313117443|ref|YP_004044426.1| - 1.7e-20 72.3 0.0 6.5e-20 70.4 0.0 2.1 2 0 0 2 2 2 1 HTH DNA binding domain GAF_3 PF13492.1 gi|313117443|ref|YP_004044426.1| - 5.4e-20 71.7 0.2 1.7e-05 24.8 0.0 3.4 3 0 0 3 3 3 3 GAF domain Response_reg PF00072.19 gi|313117443|ref|YP_004044426.1| - 3.4e-12 46.3 0.2 1.1e-11 44.7 0.1 2.0 1 0 0 1 1 1 1 Response regulator receiver domain GAF PF01590.21 gi|313117443|ref|YP_004044426.1| - 1.6e-09 38.0 1.5 0.00018 21.6 0.0 3.6 3 0 0 3 3 3 2 GAF domain Sigma70_r4 PF04545.11 gi|313117443|ref|YP_004044426.1| - 0.0057 15.9 0.5 0.022 14.0 0.1 2.2 2 0 0 2 2 2 1 Sigma-70, region 4 HTH_24 PF13412.1 gi|313117443|ref|YP_004044426.1| - 0.018 14.4 0.0 0.047 13.0 0.0 1.6 1 0 0 1 1 1 0 Winged helix-turn-helix DNA-binding FleQ PF06490.6 gi|313117443|ref|YP_004044426.1| - 0.029 14.5 0.1 0.47 10.6 0.0 3.0 3 0 0 3 3 3 0 Flagellar regulatory protein FleQ DUF3281 PF11685.3 gi|313117444|ref|YP_004044427.1| - 0.052 12.7 0.0 0.077 12.1 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF3281) HTH_20 PF12840.2 gi|313117445|ref|YP_004044428.1| - 4.2e-12 45.6 0.1 8.7e-12 44.6 0.0 1.4 1 0 0 1 1 1 1 Helix-turn-helix domain HTH_5 PF01022.15 gi|313117445|ref|YP_004044428.1| - 7e-09 35.2 0.1 9.5e-09 34.7 0.0 1.2 1 0 0 1 1 1 1 Bacterial regulatory protein, arsR family MarR_2 PF12802.2 gi|313117445|ref|YP_004044428.1| - 3.7e-08 32.9 0.0 5.3e-08 32.4 0.0 1.2 1 0 0 1 1 1 1 MarR family MarR PF01047.17 gi|313117445|ref|YP_004044428.1| - 1.6e-07 30.8 0.0 2.6e-07 30.2 0.0 1.3 1 0 0 1 1 1 1 MarR family TrmB PF01978.14 gi|313117445|ref|YP_004044428.1| - 2.4e-07 30.3 0.1 3.5e-07 29.8 0.0 1.2 1 0 0 1 1 1 1 Sugar-specific transcriptional regulator TrmB HTH_24 PF13412.1 gi|313117445|ref|YP_004044428.1| - 1e-05 24.7 0.0 1.4e-05 24.3 0.0 1.2 1 0 0 1 1 1 1 Winged helix-turn-helix DNA-binding HTH_27 PF13463.1 gi|313117445|ref|YP_004044428.1| - 1.4e-05 25.3 0.1 2.2e-05 24.6 0.1 1.4 1 0 0 1 1 1 1 Winged helix DNA-binding domain B-block_TFIIIC PF04182.7 gi|313117445|ref|YP_004044428.1| - 1.7e-05 24.5 0.0 2.6e-05 23.9 0.0 1.3 1 0 0 1 1 1 1 B-block binding subunit of TFIIIC HTH_IclR PF09339.5 gi|313117445|ref|YP_004044428.1| - 0.00033 20.1 0.0 0.00057 19.4 0.0 1.4 1 0 0 1 1 1 1 IclR helix-turn-helix domain TFIIE_alpha PF02002.12 gi|313117445|ref|YP_004044428.1| - 0.00035 20.0 0.0 0.0005 19.5 0.0 1.2 1 0 0 1 1 1 1 TFIIE alpha subunit HTH_34 PF13601.1 gi|313117445|ref|YP_004044428.1| - 0.00038 20.4 0.0 0.00055 19.9 0.0 1.3 1 0 0 1 1 1 1 Winged helix DNA-binding domain PadR PF03551.9 gi|313117445|ref|YP_004044428.1| - 0.0033 17.1 0.9 0.014 15.1 0.1 2.0 1 1 1 2 2 2 1 Transcriptional regulator PadR-like family HxlR PF01638.12 gi|313117445|ref|YP_004044428.1| - 0.0095 15.5 0.0 0.012 15.2 0.0 1.2 1 0 0 1 1 1 1 HxlR-like helix-turn-helix CLU_N PF15044.1 gi|313117445|ref|YP_004044428.1| - 0.036 14.2 0.0 0.06 13.5 0.0 1.4 1 0 0 1 1 1 0 Mitochondrial function, CLU-N-term TFIIA_gamma_N PF02268.11 gi|313117445|ref|YP_004044428.1| - 0.056 13.0 0.1 0.19 11.3 0.1 1.9 2 0 0 2 2 2 0 Transcription initiation factor IIA, gamma subunit, helical domain HTH_45 PF14947.1 gi|313117445|ref|YP_004044428.1| - 0.12 12.2 0.0 0.2 11.5 0.0 1.4 1 0 0 1 1 1 0 Winged helix-turn-helix DUF2250 PF10007.4 gi|313117445|ref|YP_004044428.1| - 0.14 12.0 1.8 0.41 10.5 0.1 2.0 2 0 0 2 2 2 0 Uncharacterized protein conserved in archaea (DUF2250) Lactamase_B PF00753.22 gi|313117449|ref|YP_004044432.1| - 1.1e-06 28.3 4.0 2.6e-06 27.2 2.8 1.7 1 1 0 1 1 1 1 Metallo-beta-lactamase superfamily Lactamase_B_2 PF12706.2 gi|313117449|ref|YP_004044432.1| - 1.7e-05 24.4 1.3 2.1e-05 24.1 0.9 1.4 1 1 0 1 1 1 1 Beta-lactamase superfamily domain Asp_Glu_race PF01177.17 gi|313117450|ref|YP_004044433.1| - 4.9e-30 105.0 0.2 5.7e-30 104.8 0.1 1.0 1 0 0 1 1 1 1 Asp/Glu/Hydantoin racemase Hydantoinase_B PF02538.9 gi|313117451|ref|YP_004044434.1| - 3.3e-166 553.6 0.0 3.8e-166 553.3 0.0 1.0 1 0 0 1 1 1 1 Hydantoinase B/oxoprolinase Hydantoinase_A PF01968.13 gi|313117452|ref|YP_004044435.1| - 9.8e-91 303.8 13.0 6.8e-88 294.5 6.5 2.4 2 0 0 2 2 2 2 Hydantoinase/oxoprolinase Hydant_A_N PF05378.8 gi|313117452|ref|YP_004044435.1| - 6.4e-52 175.5 4.1 3.6e-51 173.1 0.6 2.6 2 0 0 2 2 2 1 Hydantoinase/oxoprolinase N-terminal region MutL PF13941.1 gi|313117452|ref|YP_004044435.1| - 0.00023 19.6 4.2 0.0071 14.7 0.5 2.3 2 0 0 2 2 2 2 MutL protein BcrAD_BadFG PF01869.15 gi|313117452|ref|YP_004044435.1| - 0.0054 16.0 3.1 0.13 11.5 2.3 2.8 1 1 1 2 2 2 1 BadF/BadG/BcrA/BcrD ATPase family Gloverin PF10793.4 gi|313117452|ref|YP_004044435.1| - 0.049 13.2 0.1 0.11 12.1 0.1 1.5 1 0 0 1 1 1 0 Gloverin-like protein EutA PF06277.6 gi|313117452|ref|YP_004044435.1| - 0.19 10.3 2.6 0.13 10.8 0.6 1.5 2 0 0 2 2 2 0 Ethanolamine utilisation protein EutA Nramp PF01566.13 gi|313117453|ref|YP_004044436.1| - 3.4e-97 325.4 26.4 4.5e-97 325.0 18.3 1.1 1 0 0 1 1 1 1 Natural resistance-associated macrophage protein Ceramidase PF05875.7 gi|313117453|ref|YP_004044436.1| - 0.01 14.9 0.5 0.02 14.0 0.1 1.7 2 0 0 2 2 2 0 Ceramidase RHH_1 PF01402.16 gi|313117454|ref|YP_004044437.1| - 1.4e-05 24.7 0.1 2.9e-05 23.7 0.0 1.6 1 0 0 1 1 1 1 Ribbon-helix-helix protein, copG family RHH_3 PF12651.2 gi|313117454|ref|YP_004044437.1| - 0.0012 18.5 0.0 0.0023 17.6 0.0 1.4 1 0 0 1 1 1 1 Ribbon-helix-helix domain HTH_20 PF12840.2 gi|313117455|ref|YP_004044438.1| - 8.7e-06 25.4 0.0 3e-05 23.7 0.0 1.9 2 0 0 2 2 2 1 Helix-turn-helix domain Rpr2 PF04032.11 gi|313117455|ref|YP_004044438.1| - 0.048 13.5 1.4 0.074 12.9 0.1 1.9 2 0 0 2 2 2 0 RNAse P Rpr2/Rpp21/SNM1 subunit domain zf-Mss51 PF13824.1 gi|313117455|ref|YP_004044438.1| - 0.064 13.1 0.3 0.13 12.0 0.2 1.5 1 0 0 1 1 1 0 Zinc-finger of mitochondrial splicing suppressor 51 Ima1_N PF09779.4 gi|313117455|ref|YP_004044438.1| - 0.12 12.9 1.8 6 7.3 0.3 2.5 1 1 1 2 2 2 0 Ima1 N-terminal domain zf-met PF12874.2 gi|313117456|ref|YP_004044439.1| - 0.0073 16.4 0.2 0.014 15.5 0.2 1.5 1 0 0 1 1 1 1 Zinc-finger of C2H2 type zf-C2H2_jaz PF12171.3 gi|313117456|ref|YP_004044439.1| - 0.012 15.7 0.1 0.02 15.0 0.1 1.3 1 0 0 1 1 1 0 Zinc-finger double-stranded RNA-binding DUF629 PF04780.7 gi|313117456|ref|YP_004044439.1| - 0.042 12.3 0.2 0.059 11.8 0.1 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF629) zf-C2H2_4 PF13894.1 gi|313117456|ref|YP_004044439.1| - 0.05 13.9 1.2 0.13 12.6 0.9 1.7 1 0 0 1 1 1 0 C2H2-type zinc finger zf-C2H2 PF00096.21 gi|313117456|ref|YP_004044439.1| - 0.098 13.0 0.6 0.19 12.1 0.4 1.5 1 0 0 1 1 1 0 Zinc finger, C2H2 type FAD_binding_4 PF01565.18 gi|313117457|ref|YP_004044440.1| - 9.9e-35 119.0 2.5 1.6e-34 118.3 1.7 1.4 1 0 0 1 1 1 1 FAD binding domain BBE PF08031.7 gi|313117457|ref|YP_004044440.1| - 2.7e-15 55.9 2.1 3.6e-15 55.5 0.6 1.9 2 0 0 2 2 2 1 Berberine and berberine like Gas_vesicle PF00741.13 gi|313117458|ref|YP_004044441.1| - 1.1e-12 47.6 6.4 1.3e-12 47.4 4.4 1.1 1 0 0 1 1 1 1 Gas vesicle protein GvpL_GvpF PF06386.6 gi|313117459|ref|YP_004044442.1| - 2.3e-78 263.2 0.0 2.8e-78 262.9 0.0 1.0 1 0 0 1 1 1 1 Gas vesicle synthesis protein GvpL/GvpF DUF826 PF05696.6 gi|313117459|ref|YP_004044442.1| - 1.6 8.9 4.8 0.23 11.6 0.2 2.0 2 0 0 2 2 2 0 Protein of unknown function (DUF826) GvpK PF05121.7 gi|313117460|ref|YP_004044443.1| - 7.2e-28 96.2 7.7 8.7e-28 95.9 5.3 1.1 1 0 0 1 1 1 1 Gas vesicle protein K FlxA PF14282.1 gi|313117460|ref|YP_004044443.1| - 0.0016 18.3 0.4 0.0021 17.9 0.2 1.3 1 0 0 1 1 1 1 FlxA-like protein OTCace_N PF02729.16 gi|313117460|ref|YP_004044443.1| - 0.0067 16.0 0.1 0.0089 15.6 0.0 1.1 1 0 0 1 1 1 1 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LTV PF04180.9 gi|313117460|ref|YP_004044443.1| - 0.0092 15.5 0.9 0.012 15.1 0.4 1.3 1 1 0 1 1 1 1 Low temperature viability protein OmpH PF03938.9 gi|313117460|ref|YP_004044443.1| - 0.026 14.4 1.0 0.028 14.3 0.7 1.1 1 0 0 1 1 1 0 Outer membrane protein (OmpH-like) Spc24 PF08286.6 gi|313117460|ref|YP_004044443.1| - 0.038 13.6 1.5 0.045 13.4 1.0 1.2 1 0 0 1 1 1 0 Spc24 subunit of Ndc80 Halogen_Hydrol PF10112.4 gi|313117460|ref|YP_004044443.1| - 0.042 13.2 0.3 0.075 12.4 0.1 1.4 1 1 1 2 2 2 0 5-bromo-4-chloroindolyl phosphate hydrolysis protein DivIC PF04977.10 gi|313117460|ref|YP_004044443.1| - 0.054 12.9 0.8 0.1 12.1 0.6 1.4 1 0 0 1 1 1 0 Septum formation initiator DUF948 PF06103.6 gi|313117460|ref|YP_004044443.1| - 0.057 13.2 0.2 0.088 12.6 0.1 1.3 1 0 0 1 1 1 0 Bacterial protein of unknown function (DUF948) MbeD_MobD PF04899.7 gi|313117460|ref|YP_004044443.1| - 0.081 12.8 1.8 0.13 12.1 0.6 1.9 2 1 0 2 2 2 0 MbeD/MobD like DUF2730 PF10805.3 gi|313117460|ref|YP_004044443.1| - 0.087 12.5 0.0 0.11 12.2 0.0 1.2 1 0 0 1 1 1 0 Protein of unknown function (DUF2730) Not3 PF04065.10 gi|313117460|ref|YP_004044443.1| - 0.092 12.0 0.8 0.11 11.6 0.6 1.1 1 0 0 1 1 1 0 Not1 N-terminal domain, CCR4-Not complex component DUF3138 PF11336.3 gi|313117460|ref|YP_004044443.1| - 0.13 10.3 0.1 0.14 10.2 0.1 1.1 1 0 0 1 1 1 0 Protein of unknown function (DUF3138) DUF3573 PF12097.3 gi|313117460|ref|YP_004044443.1| - 0.15 10.6 0.0 0.16 10.5 0.0 1.0 1 0 0 1 1 1 0 Protein of unknown function (DUF3573) TPD52 PF04201.10 gi|313117460|ref|YP_004044443.1| - 0.32 10.6 2.5 0.51 10.0 1.5 1.3 1 1 0 1 1 1 0 Tumour protein D52 family Bap31 PF05529.7 gi|313117460|ref|YP_004044443.1| - 0.44 9.9 1.9 0.68 9.3 1.3 1.4 1 1 0 1 1 1 0 B-cell receptor-associated protein 31-like KfrA_N PF11740.3 gi|313117460|ref|YP_004044443.1| - 1.7 9.1 8.7 0.56 10.6 4.2 1.6 2 0 0 2 2 2 0 Plasmid replication region DNA-binding N-term DUF1192 PF06698.6 gi|313117460|ref|YP_004044443.1| - 4.4 7.2 8.9 6.2 6.7 4.4 2.4 1 1 2 3 3 3 0 Protein of unknown function (DUF1192) Gas_vesicle PF00741.13 gi|313117461|ref|YP_004044444.1| - 1.6e-16 59.8 2.7 2e-16 59.5 1.9 1.1 1 0 0 1 1 1 1 Gas vesicle protein SASP_gamma PF04259.9 gi|313117461|ref|YP_004044444.1| - 0.039 14.0 0.3 0.054 13.6 0.2 1.2 1 0 0 1 1 1 0 Small, acid-soluble spore protein, gamma-type GvpH PF05455.6 gi|313117463|ref|YP_004044446.1| - 2.1e-56 190.3 11.3 2.5e-56 190.1 7.8 1.0 1 0 0 1 1 1 1 GvpH GvpG PF05120.7 gi|313117464|ref|YP_004044447.1| - 9.5e-05 22.1 1.9 0.00011 21.9 1.3 1.1 1 0 0 1 1 1 1 Gas vesicle protein G THOC7 PF05615.8 gi|313117464|ref|YP_004044447.1| - 0.01 16.0 1.5 0.012 15.9 1.0 1.1 1 0 0 1 1 1 0 Tho complex subunit 7 Orthopox_A49R PF06489.6 gi|313117464|ref|YP_004044447.1| - 0.014 15.3 0.0 0.016 15.1 0.0 1.0 1 0 0 1 1 1 0 Orthopoxvirus A49R protein SHOCT PF09851.4 gi|313117464|ref|YP_004044447.1| - 0.044 13.2 3.6 0.094 12.2 1.8 2.1 2 0 0 2 2 2 0 Short C-terminal domain GvpL_GvpF PF06386.6 gi|313117465|ref|YP_004044448.1| - 7.7e-55 186.1 0.6 4.2e-31 108.4 0.0 2.0 1 1 1 2 2 2 2 Gas vesicle synthesis protein GvpL/GvpF PadR PF03551.9 gi|313117466|ref|YP_004044449.1| - 4.5e-09 35.9 0.0 1e-08 34.7 0.0 1.6 1 0 0 1 1 1 1 Transcriptional regulator PadR-like family FUR PF01475.14 gi|313117466|ref|YP_004044449.1| - 0.011 15.7 0.0 0.015 15.1 0.0 1.3 1 0 0 1 1 1 0 Ferric uptake regulator family HTH_5 PF01022.15 gi|313117466|ref|YP_004044449.1| - 0.015 14.9 0.0 0.078 12.6 0.0 2.1 1 1 0 1 1 1 0 Bacterial regulatory protein, arsR family TrmB PF01978.14 gi|313117466|ref|YP_004044449.1| - 0.028 14.0 0.0 0.053 13.2 0.0 1.5 1 0 0 1 1 1 0 Sugar-specific transcriptional regulator TrmB DEK_C PF08766.6 gi|313117466|ref|YP_004044449.1| - 0.03 14.1 0.6 33 4.3 0.0 3.6 4 0 0 4 4 4 0 DEK C terminal domain HTH_20 PF12840.2 gi|313117466|ref|YP_004044449.1| - 0.11 12.3 0.4 0.48 10.2 0.0 2.0 2 0 0 2 2 2 0 Helix-turn-helix domain GvpD PF07088.6 gi|313117467|ref|YP_004044450.1| - 1.6e-246 818.2 0.0 1.9e-246 818.0 0.0 1.0 1 0 0 1 1 1 1 GvpD gas vesicle protein KaiC PF06745.8 gi|313117467|ref|YP_004044450.1| - 1e-12 47.7 0.0 2e-09 36.9 0.0 2.3 2 0 0 2 2 2 2 KaiC AAA_25 PF13481.1 gi|313117467|ref|YP_004044450.1| - 6.6e-05 22.4 0.0 0.00024 20.5 0.0 2.0 1 0 0 1 1 1 1 AAA domain AAA_16 PF13191.1 gi|313117467|ref|YP_004044450.1| - 0.0015 18.5 0.2 0.0062 16.5 0.1 2.0 1 1 0 1 1 1 1 AAA ATPase domain AAA_19 PF13245.1 gi|313117467|ref|YP_004044450.1| - 0.0061 16.2 0.1 0.026 14.2 0.0 2.0 2 0 0 2 2 2 1 Part of AAA domain PAXNEB PF05625.6 gi|313117467|ref|YP_004044450.1| - 0.012 14.5 0.1 0.02 13.7 0.1 1.3 1 0 0 1 1 1 0 PAXNEB protein DUF2075 PF09848.4 gi|313117467|ref|YP_004044450.1| - 0.1 11.5 0.0 0.16 10.9 0.0 1.2 1 0 0 1 1 1 0 Uncharacterized conserved protein (DUF2075) Gas_vesicle PF00741.13 gi|313117468|ref|YP_004044451.1| - 6.8e-16 57.8 6.9 8.7e-16 57.5 4.8 1.1 1 0 0 1 1 1 1 Gas vesicle protein Halo_GVPC PF05465.8 gi|313117469|ref|YP_004044452.1| - 2e-53 177.3 77.2 1.9e-10 40.3 2.0 7.6 6 1 1 7 7 7 7 Halobacterial gas vesicle protein C (GVPC) repeat AAA_13 PF13166.1 gi|313117469|ref|YP_004044452.1| - 1.5e-08 33.6 4.4 1.5e-08 33.6 3.1 1.8 1 1 1 2 2 2 2 AAA domain TPR_MLP1_2 PF07926.7 gi|313117469|ref|YP_004044452.1| - 1.3e-06 28.1 7.1 0.0058 16.3 0.1 4.0 1 1 1 3 3 3 1 TPR/MLP1/MLP2-like protein Laminin_I PF06008.9 gi|313117469|ref|YP_004044452.1| - 4.9e-05 22.7 3.8 4.9e-05 22.7 2.6 2.1 1 1 1 2 2 2 1 Laminin Domain I CorA PF01544.13 gi|313117469|ref|YP_004044452.1| - 5.5e-05 22.3 3.2 5.5e-05 22.3 2.2 2.2 1 1 1 2 2 2 1 CorA-like Mg2+ transporter protein Mnd1 PF03962.10 gi|313117469|ref|YP_004044452.1| - 7e-05 22.5 6.0 0.21 11.2 1.0 3.0 1 1 2 3 3 3 2 Mnd1 family Filament PF00038.16 gi|313117469|ref|YP_004044452.1| - 7.7e-05 22.2 12.7 0.00014 21.4 8.8 1.5 1 1 0 1 1 1 1 Intermediate filament protein IncA PF04156.9 gi|313117469|ref|YP_004044452.1| - 0.00011 21.8 9.4 0.56 9.7 3.8 3.2 1 1 2 3 3 3 1 IncA protein Seryl_tRNA_N PF02403.17 gi|313117469|ref|YP_004044452.1| - 0.00015 21.6 4.3 0.55 10.2 0.0 3.8 1 1 3 4 4 4 2 Seryl-tRNA synthetase N-terminal domain LOH1CR12 PF10158.4 gi|313117469|ref|YP_004044452.1| - 0.00016 21.4 4.4 1.9 8.3 0.1 4.0 1 1 3 4 4 4 1 Tumour suppressor protein OmpH PF03938.9 gi|313117469|ref|YP_004044452.1| - 0.00027 20.8 15.4 1.6 8.6 4.4 3.6 1 1 1 2 2 2 1 Outer membrane protein (OmpH-like) GAS PF13851.1 gi|313117469|ref|YP_004044452.1| - 0.00047 19.4 2.7 0.072 12.2 0.0 3.1 1 1 2 3 3 3 1 Growth-arrest specific micro-tubule binding DUF869 PF05911.6 gi|313117469|ref|YP_004044452.1| - 0.00061 18.1 0.8 0.00082 17.7 0.6 1.1 1 0 0 1 1 1 1 Plant protein of unknown function (DUF869) Vps5 PF09325.5 gi|313117469|ref|YP_004044452.1| - 0.00074 18.8 9.5 0.022 14.0 5.0 2.3 1 1 1 2 2 2 1 Vps5 C terminal like HsbA PF12296.3 gi|313117469|ref|YP_004044452.1| - 0.00091 19.0 2.4 1.3 8.8 0.0 3.1 1 1 2 3 3 3 1 Hydrophobic surface binding protein A Spc7 PF08317.6 gi|313117469|ref|YP_004044452.1| - 0.00097 17.8 1.4 0.36 9.4 0.0 2.6 1 1 2 3 3 3 1 Spc7 kinetochore protein APG17 PF04108.7 gi|313117469|ref|YP_004044452.1| - 0.0014 17.4 3.2 0.12 11.1 2.2 2.4 1 1 0 1 1 1 1 Autophagy protein Apg17 Lectin_N PF03954.9 gi|313117469|ref|YP_004044452.1| - 0.0023 17.3 0.1 0.9 8.9 0.0 3.0 1 1 1 2 2 2 1 Hepatic lectin, N-terminal domain CagZ PF09053.5 gi|313117469|ref|YP_004044452.1| - 0.0024 17.2 3.3 0.0068 15.7 1.0 2.3 1 1 1 2 2 2 1 CagZ DUF1664 PF07889.7 gi|313117469|ref|YP_004044452.1| - 0.0029 17.3 2.6 0.24 11.2 0.2 3.1 1 1 1 3 3 3 2 Protein of unknown function (DUF1664) RTBV_P46 PF06216.6 gi|313117469|ref|YP_004044452.1| - 0.0047 15.8 0.2 0.018 13.9 0.1 1.8 1 1 0 2 2 2 1 Rice tungro bacilliform virus P46 protein Apolipoprotein PF01442.13 gi|313117469|ref|YP_004044452.1| - 0.0053 16.2 9.9 0.067 12.7 6.8 2.2 1 1 0 1 1 1 1 Apolipoprotein A1/A4/E domain EHN PF06441.7 gi|313117469|ref|YP_004044452.1| - 0.0057 16.5 0.0 0.23 11.4 0.0 2.8 1 1 0 1 1 1 1 Epoxide hydrolase N terminus DUF2730 PF10805.3 gi|313117469|ref|YP_004044452.1| - 0.0078 15.9 1.6 14 5.5 0.0 4.4 3 1 2 5 5 5 0 Protein of unknown function (DUF2730) Phage_GP20 PF06810.6 gi|313117469|ref|YP_004044452.1| - 0.0085 15.5 4.6 1 8.7 0.1 3.4 1 1 0 3 3 3 1 Phage minor structural protein GP20 Baculo_PEP_C PF04513.7 gi|313117469|ref|YP_004044452.1| - 0.0087 15.8 1.7 6 6.6 0.0 3.3 1 1 1 2 2 2 0 Baculovirus polyhedron envelope protein, PEP, C terminus Streptin-Immun PF11083.3 gi|313117469|ref|YP_004044452.1| - 0.0088 16.0 1.3 55 3.8 0.0 4.2 2 1 1 4 4 4 0 Lantibiotic streptin immunity protein DUF904 PF06005.7 gi|313117469|ref|YP_004044452.1| - 0.016 15.5 0.8 0.62 10.3 0.1 2.9 4 0 0 4 4 2 0 Protein of unknown function (DUF904) Tup_N PF08581.5 gi|313117469|ref|YP_004044452.1| - 0.017 15.2 9.9 0.12 12.5 0.3 3.4 1 1 3 4 4 4 0 Tup N-terminal Bacillus_HBL PF05791.6 gi|313117469|ref|YP_004044452.1| - 0.018 14.4 6.8 1.3 8.3 0.2 3.5 1 1 2 3 3 3 0 Bacillus haemolytic enterotoxin (HBL) ALIX_LYPXL_bnd PF13949.1 gi|313117469|ref|YP_004044452.1| - 0.03 13.2 6.8 0.24 10.3 0.8 2.7 1 1 1 2 2 2 0 ALIX V-shaped domain binding to HIV HAUS5 PF14817.1 gi|313117469|ref|YP_004044452.1| - 0.031 12.8 4.4 0.22 9.9 0.3 2.3 1 1 1 2 2 2 0 HAUS augmin-like complex subunit 5 DUF4200 PF13863.1 gi|313117469|ref|YP_004044452.1| - 0.038 13.9 14.3 0.38 10.7 0.9 4.4 2 2 1 4 4 4 0 Domain of unknown function (DUF4200) YgaB PF14182.1 gi|313117469|ref|YP_004044452.1| - 0.041 14.1 6.8 1.5 9.1 0.1 4.2 3 2 1 4 4 3 0 YgaB-like protein DUF2605 PF10792.4 gi|313117469|ref|YP_004044452.1| - 0.056 13.1 3.0 3.1 7.5 0.0 3.4 2 1 0 3 3 3 0 Protein of unknown function (DUF2605) ECM11 PF15463.1 gi|313117469|ref|YP_004044452.1| - 0.06 13.6 0.1 0.06 13.6 0.1 3.1 4 0 0 4 4 2 0 Extracellular mutant protein 11 Mod_r PF07200.8 gi|313117469|ref|YP_004044452.1| - 0.066 13.1 7.6 0.35 10.7 0.6 2.8 1 1 2 3 3 3 0 Modifier of rudimentary (Mod(r)) protein Complex1_LYR_2 PF13233.1 gi|313117469|ref|YP_004044452.1| - 0.075 13.5 2.3 0.79 10.2 0.4 2.9 1 1 1 2 2 2 0 Complex1_LYR-like gpW PF02831.10 gi|313117469|ref|YP_004044452.1| - 0.083 12.4 2.3 16 5.1 0.0 3.8 4 0 0 4 4 3 0 gpW DUF16 PF01519.11 gi|313117469|ref|YP_004044452.1| - 0.11 12.7 3.3 6.2 7.0 0.1 2.7 2 1 0 3 3 2 0 Protein of unknown function DUF16 DUF1367 PF07105.6 gi|313117469|ref|YP_004044452.1| - 0.11 11.8 4.4 0.87 8.9 0.2 3.1 1 1 0 3 3 3 0 Protein of unknown function (DUF1367) DUF2508 PF10704.4 gi|313117469|ref|YP_004044452.1| - 0.12 12.6 7.4 2.4 8.3 0.2 4.5 1 1 5 6 6 5 0 Protein of unknown function (DUF2508) WXG100 PF06013.7 gi|313117469|ref|YP_004044452.1| - 0.13 12.3 17.1 8.6 6.4 0.1 4.6 1 1 5 6 6 6 0 Proteins of 100 residues with WXG DUF3770 PF12603.3 gi|313117469|ref|YP_004044452.1| - 0.15 11.1 9.4 0.13 11.3 1.1 3.0 2 1 1 3 3 3 0 Protein of unknown function (DUF3770) Med9 PF07544.8 gi|313117469|ref|YP_004044452.1| - 0.15 11.8 3.2 2.7 7.7 0.2 3.7 1 1 2 4 4 4 0 RNA polymerase II transcription mediator complex subunit 9 Cor1 PF04803.7 gi|313117469|ref|YP_004044452.1| - 0.17 11.6 3.9 0.23 11.2 0.3 2.5 2 2 0 2 2 2 0 Cor1/Xlr/Xmr conserved region Cortex-I_coil PF09304.5 gi|313117469|ref|YP_004044452.1| - 0.18 11.8 6.9 0.33 11.0 0.4 3.3 1 1 3 4 4 4 0 Cortexillin I, coiled coil CENP-F_leu_zip PF10473.4 gi|313117469|ref|YP_004044452.1| - 0.19 11.5 5.1 2.1 8.1 0.1 3.3 1 1 2 3 3 3 0 Leucine-rich repeats of kinetochore protein Cenp-F/LEK1 FimP PF09766.4 gi|313117469|ref|YP_004044452.1| - 0.2 10.6 2.0 0.75 8.8 0.4 2.2 2 0 0 2 2 2 0 Fms-interacting protein Spectrin PF00435.16 gi|313117469|ref|YP_004044452.1| - 0.22 11.8 10.7 4.1 7.7 0.5 4.3 1 1 1 3 3 3 0 Spectrin repeat PilJ PF13675.1 gi|313117469|ref|YP_004044452.1| - 0.22 11.8 10.9 2 8.7 0.6 3.6 1 1 3 4 4 4 0 Type IV pili methyl-accepting chemotaxis transducer N-term MutS_III PF05192.13 gi|313117469|ref|YP_004044452.1| - 0.25 11.0 9.1 0.12 12.1 3.0 2.1 1 1 1 2 2 2 0 MutS domain III Phasin PF05597.6 gi|313117469|ref|YP_004044452.1| - 0.29 10.9 7.9 4.9 6.9 0.1 3.5 1 1 1 3 3 3 0 Poly(hydroxyalcanoate) granule associated protein (phasin) BLOC1_2 PF10046.4 gi|313117469|ref|YP_004044452.1| - 0.31 11.1 4.8 47 4.2 0.1 4.0 1 1 4 5 5 5 0 Biogenesis of lysosome-related organelles complex-1 subunit 2 V-SNARE PF05008.10 gi|313117469|ref|YP_004044452.1| - 0.41 10.8 3.3 15 5.8 0.2 3.5 3 2 0 3 3 2 0 Vesicle transport v-SNARE protein N-terminus DUF4241 PF14025.1 gi|313117469|ref|YP_004044452.1| - 0.43 10.3 6.9 0.077 12.7 0.8 2.3 1 1 0 2 2 2 0 Protein of unknown function (DUF4241) DMPK_coil PF08826.5 gi|313117469|ref|YP_004044452.1| - 0.59 10.0 6.0 14 5.6 0.1 3.8 4 1 0 4 4 3 0 DMPK coiled coil domain like DUF3348 PF11828.3 gi|313117469|ref|YP_004044452.1| - 0.65 9.3 9.6 0.13 11.6 1.7 2.2 1 1 0 2 2 2 0 Protein of unknown function (DUF3348) V_ATPase_I PF01496.14 gi|313117469|ref|YP_004044452.1| - 0.67 7.7 3.4 1.4 6.6 2.4 1.6 1 1 0 1 1 1 0 V-type ATPase 116kDa subunit family DASH_Spc34 PF08657.5 gi|313117469|ref|YP_004044452.1| - 0.75 9.4 5.1 1.5 8.4 1.2 2.6 1 1 0 2 2 2 0 DASH complex subunit Spc34 Rab5-bind PF09311.6 gi|313117469|ref|YP_004044452.1| - 0.88 9.4 5.6 0.26 11.1 0.9 2.0 1 1 0 1 1 1 0 Rabaptin-like protein FtsK_SpoIIIE PF01580.13 gi|313117469|ref|YP_004044452.1| - 1.3 8.4 6.2 0.19 11.2 0.9 2.0 1 1 1 2 2 2 0 FtsK/SpoIIIE family DUF2779 PF11074.3 gi|313117469|ref|YP_004044452.1| - 1.7 8.6 4.6 17 5.4 0.2 2.7 1 1 0 2 2 2 0 Domain of unknown function(DUF2779) Alph_Pro_TM PF09608.5 gi|313117469|ref|YP_004044452.1| - 1.8 8.0 4.3 1.1 8.6 0.2 2.1 2 0 0 2 2 2 0 Putative transmembrane protein (Alph_Pro_TM) DUF2664 PF10867.3 gi|313117469|ref|YP_004044452.1| - 1.8 9.2 9.7 3.6 8.2 1.1 3.5 2 2 1 3 3 3 0 Protein of unknown function (DUF2664) DUF724 PF05266.9 gi|313117469|ref|YP_004044452.1| - 2.2 7.8 11.2 3.9 7.0 1.0 2.9 1 1 0 3 3 3 0 Protein of unknown function (DUF724) CCP_MauG PF03150.9 gi|313117469|ref|YP_004044452.1| - 3.3 7.9 16.6 1.2 9.3 0.6 3.4 1 1 2 3 3 3 0 Di-haem cytochrome c peroxidase FlgN PF05130.7 gi|313117469|ref|YP_004044452.1| - 4.5 7.5 6.7 5.4 7.2 1.6 2.7 2 2 0 2 2 2 0 FlgN protein APG6 PF04111.7 gi|313117469|ref|YP_004044452.1| - 6.8 5.6 9.6 13 4.6 0.5 2.3 1 1 2 3 3 3 0 Autophagy protein Apg6 Rotamase PF00639.16 gi|313117469|ref|YP_004044452.1| - 7.9 7.2 16.2 17 6.2 0.1 4.4 2 1 3 5 5 5 0 PPIC-type PPIASE domain 4HB_MCP_1 PF12729.2 gi|313117469|ref|YP_004044452.1| - 8.2 5.7 11.2 7.9 5.7 0.2 3.7 1 1 3 4 4 4 0 Four helix bundle sensory module for signal transduction FUSC PF04632.7 gi|313117469|ref|YP_004044452.1| - 8.4 4.6 14.1 3.3e+02 -0.6 9.8 2.1 1 1 0 1 1 1 0 Fusaric acid resistance protein family ROS_MUCR PF05443.6 gi|313117470|ref|YP_004044453.1| - 9.5e-08 31.8 0.0 1.1e-07 31.6 0.0 1.1 1 0 0 1 1 1 1 ROS/MUCR transcriptional regulator protein AAA_5 PF07728.9 gi|313117471|ref|YP_004044454.1| - 1.3e-18 67.0 0.0 2.7e-17 62.7 0.0 2.4 1 1 0 1 1 1 1 AAA domain (dynein-related subfamily) AAA PF00004.24 gi|313117471|ref|YP_004044454.1| - 1.6e-05 25.1 0.0 4.7e-05 23.6 0.0 2.0 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) AAA_3 PF07726.6 gi|313117471|ref|YP_004044454.1| - 2.3e-05 24.0 0.0 0.0043 16.6 0.0 2.4 1 1 0 1 1 1 1 ATPase family associated with various cellular activities (AAA) IstB_IS21 PF01695.12 gi|313117471|ref|YP_004044454.1| - 8e-05 22.1 0.0 0.00018 21.0 0.0 1.6 1 0 0 1 1 1 1 IstB-like ATP binding protein AAA_22 PF13401.1 gi|313117471|ref|YP_004044454.1| - 0.00018 21.6 0.0 0.00051 20.1 0.0 1.7 2 0 0 2 2 2 1 AAA domain AAA_16 PF13191.1 gi|313117471|ref|YP_004044454.1| - 0.002 18.1 0.2 0.015 15.2 0.0 2.3 2 2 0 2 2 2 1 AAA ATPase domain Sigma54_activ_2 PF14532.1 gi|313117471|ref|YP_004044454.1| - 0.0035 17.3 0.0 0.012 15.6 0.0 2.1 1 1 0 1 1 1 1 Sigma-54 interaction domain Arch_ATPase PF01637.13 gi|313117471|ref|YP_004044454.1| - 0.0039 16.9 0.0 0.017 14.8 0.0 2.0 2 0 0 2 2 2 1 Archaeal ATPase AAA_17 PF13207.1 gi|313117471|ref|YP_004044454.1| - 0.0041 17.9 0.2 0.054 14.3 0.0 2.5 1 1 0 2 2 2 1 AAA domain TIP49 PF06068.8 gi|313117471|ref|YP_004044454.1| - 0.0054 15.4 0.0 0.033 12.9 0.0 2.0 2 0 0 2 2 2 1 TIP49 C-terminus Sigma54_activat PF00158.21 gi|313117471|ref|YP_004044454.1| - 0.0055 16.1 0.0 0.11 11.9 0.0 2.2 2 0 0 2 2 2 1 Sigma-54 interaction domain CbbQ_C PF08406.5 gi|313117471|ref|YP_004044454.1| - 0.0061 16.5 0.8 0.011 15.6 0.6 1.5 1 0 0 1 1 1 1 CbbQ/NirQ/NorQ C-terminal AAA_14 PF13173.1 gi|313117471|ref|YP_004044454.1| - 0.0066 16.3 0.0 0.014 15.2 0.0 1.6 1 0 0 1 1 1 1 AAA domain ABC_tran PF00005.22 gi|313117471|ref|YP_004044454.1| - 0.0078 16.5 0.1 0.015 15.5 0.0 1.8 2 1 0 2 2 1 1 ABC transporter NACHT PF05729.7 gi|313117471|ref|YP_004044454.1| - 0.015 15.0 0.0 0.045 13.4 0.0 1.8 2 0 0 2 2 2 0 NACHT domain AAA_25 PF13481.1 gi|313117471|ref|YP_004044454.1| - 0.015 14.7 0.0 0.06 12.7 0.0 2.0 2 0 0 2 2 2 0 AAA domain IPT PF01745.11 gi|313117471|ref|YP_004044454.1| - 0.017 14.3 0.0 0.027 13.6 0.0 1.4 1 0 0 1 1 1 0 Isopentenyl transferase PhoH PF02562.11 gi|313117471|ref|YP_004044454.1| - 0.018 14.3 0.0 0.069 12.3 0.0 1.9 2 0 0 2 2 2 0 PhoH-like protein AAA_33 PF13671.1 gi|313117471|ref|YP_004044454.1| - 0.025 14.4 2.3 0.08 12.8 0.0 2.7 3 0 0 3 3 3 0 AAA domain RuvB_N PF05496.7 gi|313117471|ref|YP_004044454.1| - 0.03 13.3 0.0 0.32 9.9 0.0 2.3 2 1 0 2 2 2 0 Holliday junction DNA helicase ruvB N-terminus AAA_7 PF12775.2 gi|313117471|ref|YP_004044454.1| - 0.091 11.8 0.0 0.47 9.4 0.0 1.9 1 1 1 2 2 2 0 P-loop containing dynein motor region D3 AAA_28 PF13521.1 gi|313117471|ref|YP_004044454.1| - 0.12 12.3 1.1 0.33 10.8 0.0 2.3 3 0 0 3 3 3 0 AAA domain AAA_19 PF13245.1 gi|313117471|ref|YP_004044454.1| - 0.13 12.0 0.0 0.34 10.7 0.0 1.7 1 0 0 1 1 1 0 Part of AAA domain AAA_18 PF13238.1 gi|313117471|ref|YP_004044454.1| - 0.16 12.2 2.7 0.18 12.1 0.0 2.4 3 1 0 3 3 3 0 AAA domain GvpO PF05800.6 gi|313117472|ref|YP_004044455.1| - 7.7e-37 125.2 0.6 1.1e-36 124.6 0.4 1.3 1 1 0 1 1 1 1 Gas vesicle synthesis protein GvpO PGA2 PF07543.7 gi|313117472|ref|YP_004044455.1| - 0.015 15.1 0.4 0.024 14.4 0.3 1.4 1 0 0 1 1 1 0 Protein trafficking PGA2 FTHFS PF01268.14 gi|313117473|ref|YP_004044456.1| - 3.9e-245 814.1 0.0 4.3e-245 813.9 0.0 1.0 1 0 0 1 1 1 1 Formate--tetrahydrofolate ligase HATPase_c PF02518.21 gi|313117474|ref|YP_004044457.1| - 7.4e-21 73.9 0.1 2.1e-20 72.5 0.0 1.8 2 0 0 2 2 2 1 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HATPase_c_5 PF14501.1 gi|313117474|ref|YP_004044457.1| - 8.3e-08 31.8 0.0 1.3e-07 31.2 0.0 1.3 1 0 0 1 1 1 1 GHKL domain HATPase_c_2 PF13581.1 gi|313117474|ref|YP_004044457.1| - 5.4e-07 29.4 0.0 1.2e-06 28.3 0.0 1.6 1 0 0 1 1 1 1 Histidine kinase-like ATPase domain HisKA PF00512.20 gi|313117474|ref|YP_004044457.1| - 2.4e-05 24.2 0.6 5.9e-05 22.9 0.2 1.9 1 1 0 1 1 1 1 His Kinase A (phospho-acceptor) domain SPOB_a PF14689.1 gi|313117474|ref|YP_004044457.1| - 0.065 12.8 0.0 0.12 11.9 0.0 1.4 1 0 0 1 1 1 0 Sensor_kinase_SpoOB-type, alpha-helical domain PAS_9 PF13426.1 gi|313117475|ref|YP_004044458.1| - 1.5e-46 157.0 0.8 3.8e-17 62.5 0.0 3.4 3 0 0 3 3 3 3 PAS domain PAS_3 PF08447.6 gi|313117475|ref|YP_004044458.1| - 2e-46 155.9 0.2 2.7e-17 62.6 0.0 3.5 3 0 0 3 3 3 3 PAS fold PAS_4 PF08448.5 gi|313117475|ref|YP_004044458.1| - 1.7e-41 140.7 1.1 2e-16 59.9 0.1 3.5 4 0 0 4 4 4 3 PAS fold PAS PF00989.19 gi|313117475|ref|YP_004044458.1| - 7.7e-38 128.7 0.3 9.8e-15 54.3 0.0 3.2 3 0 0 3 3 3 3 PAS fold Response_reg PF00072.19 gi|313117475|ref|YP_004044458.1| - 2.7e-19 69.2 0.0 7.3e-19 67.8 0.0 1.7 1 0 0 1 1 1 1 Response regulator receiver domain PAS_8 PF13188.1 gi|313117475|ref|YP_004044458.1| - 1.7e-16 59.4 0.3 0.00024 20.8 0.0 3.4 3 0 0 3 3 3 3 PAS domain PAS_11 PF14598.1 gi|313117475|ref|YP_004044458.1| - 2.3e-05 24.3 0.0 0.00082 19.3 0.0 2.6 3 0 0 3 3 3 1 PAS domain PAS_7 PF12860.2 gi|313117475|ref|YP_004044458.1| - 0.00045 20.1 5.3 1.6 8.8 0.0 4.7 3 2 1 4 4 4 2 PAS fold Glyco_tranf_2_4 PF13704.1 gi|313117475|ref|YP_004044458.1| - 0.073 13.3 0.0 0.28 11.5 0.0 2.0 1 0 0 1 1 1 0 Glycosyl transferase family 2 Molybdopterin PF00384.17 gi|313117476|ref|YP_004044459.1| - 4.8e-85 285.8 0.0 5.9e-85 285.5 0.0 1.1 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Molydop_binding PF01568.16 gi|313117476|ref|YP_004044459.1| - 5.9e-32 109.7 0.0 1.2e-31 108.7 0.0 1.5 1 0 0 1 1 1 1 Molydopterin dinucleotide binding domain Fer2_4 PF13510.1 gi|313117476|ref|YP_004044459.1| - 1.1e-25 89.2 0.6 2.3e-25 88.2 0.4 1.6 1 0 0 1 1 1 1 2Fe-2S iron-sulfur cluster binding domain NADH-G_4Fe-4S_3 PF10588.4 gi|313117476|ref|YP_004044459.1| - 9.5e-14 50.3 0.8 2.7e-13 48.9 0.5 1.9 1 0 0 1 1 1 1 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Molybdop_Fe4S4 PF04879.11 gi|313117476|ref|YP_004044459.1| - 5.7e-10 38.8 0.0 1.9e-09 37.1 0.0 2.0 1 0 0 1 1 1 1 Molybdopterin oxidoreductase Fe4S4 domain Fer4_7 PF12838.2 gi|313117476|ref|YP_004044459.1| - 2.7e-09 37.2 10.1 2.3e-07 31.0 6.3 3.5 3 1 0 3 3 3 1 4Fe-4S dicluster domain Fer4_21 PF14697.1 gi|313117476|ref|YP_004044459.1| - 1.7e-08 34.2 8.9 1.7e-08 34.2 6.2 2.8 4 0 0 4 4 2 1 4Fe-4S dicluster domain Fer4 PF00037.22 gi|313117476|ref|YP_004044459.1| - 6e-07 28.8 23.0 0.00023 20.6 1.9 3.6 3 0 0 3 3 3 2 4Fe-4S binding domain Fer4_10 PF13237.1 gi|313117476|ref|YP_004044459.1| - 7e-07 28.9 10.5 7e-07 28.9 7.3 3.2 3 1 1 4 4 3 2 4Fe-4S dicluster domain Fer4_8 PF13183.1 gi|313117476|ref|YP_004044459.1| - 2.9e-06 27.1 7.7 2.9e-06 27.1 5.3 3.4 3 0 0 3 3 3 1 4Fe-4S dicluster domain Fer4_6 PF12837.2 gi|313117476|ref|YP_004044459.1| - 8.9e-06 25.3 13.4 1.8e-05 24.3 1.7 4.0 4 0 0 4 4 3 2 4Fe-4S binding domain Fer4_9 PF13187.1 gi|313117476|ref|YP_004044459.1| - 3.2e-05 24.1 12.1 3.2e-05 24.1 8.4 3.5 2 1 1 3 3 3 2 4Fe-4S dicluster domain Fer4_15 PF13459.1 gi|313117476|ref|YP_004044459.1| - 0.00039 20.9 10.1 0.011 16.2 0.5 3.7 3 0 0 3 3 2 2 4Fe-4S single cluster domain Fer4_16 PF13484.1 gi|313117476|ref|YP_004044459.1| - 0.00051 20.7 13.6 0.006 17.3 1.2 4.0 3 0 0 3 3 3 2 4Fe-4S double cluster binding domain Fer4_2 PF12797.2 gi|313117476|ref|YP_004044459.1| - 0.00095 18.9 2.8 0.00095 18.9 1.9 4.8 5 0 0 5 5 5 2 4Fe-4S binding domain CDC48_N PF02359.13 gi|313117476|ref|YP_004044459.1| - 0.009 15.9 0.0 0.024 14.5 0.0 1.7 1 0 0 1 1 1 1 Cell division protein 48 (CDC48), N-terminal domain Fer4_17 PF13534.1 gi|313117476|ref|YP_004044459.1| - 0.077 13.3 0.4 0.077 13.3 0.3 4.1 3 1 0 3 3 3 0 4Fe-4S dicluster domain Fer4_18 PF13746.1 gi|313117476|ref|YP_004044459.1| - 0.19 12.1 22.8 0.17 12.3 2.7 3.5 2 1 1 3 3 3 0 4Fe-4S dicluster domain Fer4_13 PF13370.1 gi|313117476|ref|YP_004044459.1| - 0.53 10.7 15.2 0.9 9.9 2.4 2.9 2 0 0 2 2 2 0 4Fe-4S single cluster domain Zn-ribbon_8 PF09723.5 gi|313117478|ref|YP_004044461.1| - 0.0033 17.3 1.3 0.013 15.4 0.2 2.0 2 0 0 2 2 2 1 Zinc ribbon domain zf-RING_3 PF14369.1 gi|313117478|ref|YP_004044461.1| - 0.0036 17.2 1.8 0.061 13.3 0.2 2.3 2 0 0 2 2 2 1 zinc-finger TF_Zn_Ribbon PF08271.7 gi|313117478|ref|YP_004044461.1| - 0.011 14.9 4.8 0.13 11.6 0.7 2.3 2 0 0 2 2 2 0 TFIIB zinc-binding zf-ribbon_3 PF13248.1 gi|313117478|ref|YP_004044461.1| - 0.015 14.5 0.2 0.015 14.5 0.1 1.8 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_5 PF13719.1 gi|313117478|ref|YP_004044461.1| - 0.018 14.6 0.1 0.018 14.6 0.1 1.6 2 0 0 2 2 2 0 zinc-ribbon domain zinc_ribbon_4 PF13717.1 gi|313117478|ref|YP_004044461.1| - 0.057 13.1 0.1 0.057 13.1 0.1 1.7 2 0 0 2 2 2 0 zinc-ribbon domain Lar_restr_allev PF14354.1 gi|313117478|ref|YP_004044461.1| - 0.083 13.2 2.6 0.18 12.0 1.8 1.8 1 1 0 1 1 1 0 Restriction alleviation protein Lar Prok-RING_1 PF14446.1 gi|313117478|ref|YP_004044461.1| - 9.3 6.0 6.6 3.3 7.5 1.5 2.3 1 1 1 2 2 2 0 Prokaryotic RING finger family 1 Hexapep PF00132.19 gi|313117479|ref|YP_004044462.1| - 3.6e-11 42.0 8.9 8.8e-07 28.1 1.8 3.2 2 1 1 3 3 3 2 Bacterial transferase hexapeptide (six repeats) SATase_N PF06426.9 gi|313117479|ref|YP_004044462.1| - 1.3e-05 25.4 0.0 2.2e-05 24.6 0.0 1.3 1 0 0 1 1 1 1 Serine acetyltransferase, N-terminal Hexapep_2 PF14602.1 gi|313117479|ref|YP_004044462.1| - 0.00019 20.8 3.8 0.0028 17.1 0.6 2.6 2 0 0 2 2 2 2 Hexapeptide repeat of succinyl-transferase E1-E2_ATPase PF00122.15 gi|313117480|ref|YP_004044463.1| - 1.1e-74 250.3 1.9 1.1e-74 250.3 1.3 2.6 2 1 1 3 3 3 1 E1-E2 ATPase Hydrolase PF00702.21 gi|313117480|ref|YP_004044463.1| - 3.7e-40 138.6 4.3 9.1e-40 137.3 3.0 1.7 1 0 0 1 1 1 1 haloacid dehalogenase-like hydrolase Cation_ATPase_C PF00689.16 gi|313117480|ref|YP_004044463.1| - 1.7e-34 118.9 6.1 1.7e-34 118.9 4.2 2.3 3 0 0 3 3 3 1 Cation transporting ATPase, C-terminus Cation_ATPase_N PF00690.21 gi|313117480|ref|YP_004044463.1| - 4.6e-18 64.4 0.0 9.5e-18 63.4 0.0 1.6 1 0 0 1 1 1 1 Cation transporter/ATPase, N-terminus HAD PF12710.2 gi|313117480|ref|YP_004044463.1| - 1.2e-17 64.6 0.2 3.4e-17 63.2 0.1 1.8 1 1 0 1 1 1 1 haloacid dehalogenase-like hydrolase Hydrolase_like2 PF13246.1 gi|313117480|ref|YP_004044463.1| - 6.1e-17 61.3 0.0 1.5e-16 60.0 0.0 1.6 1 0 0 1 1 1 1 Putative hydrolase of sodium-potassium ATPase alpha subunit Hydrolase_3 PF08282.7 gi|313117480|ref|YP_004044463.1| - 7.5e-06 25.6 0.2 0.00021 20.9 0.4 2.1 2 0 0 2 2 2 1 haloacid dehalogenase-like hydrolase DUF3357 PF11837.3 gi|313117480|ref|YP_004044463.1| - 0.11 12.3 0.7 1.1 9.1 0.0 2.9 2 0 0 2 2 2 0 Domain of unknown function (DUF3357) VIT1 PF01988.14 gi|313117481|ref|YP_004044464.1| - 6.4e-18 65.0 13.5 2.8e-11 43.3 4.9 2.0 1 1 1 2 2 2 2 VIT family Gly-zipper_OmpA PF13436.1 gi|313117481|ref|YP_004044464.1| - 1.4 8.5 7.2 4.4 6.9 0.1 2.3 2 0 0 2 2 2 0 Glycine-zipper containing OmpA-like membrane domain DUF211 PF02680.9 gi|313117482|ref|YP_004044465.1| - 2.9e-31 107.1 0.5 3.1e-31 107.0 0.3 1.0 1 0 0 1 1 1 1 Uncharacterized ArCR, COG1888 LigD_N PF13298.1 gi|313117482|ref|YP_004044465.1| - 0.11 12.6 0.0 0.12 12.4 0.0 1.2 1 0 0 1 1 1 0 DNA polymerase Ligase (LigD) Phage_integrase PF00589.17 gi|313117483|ref|YP_004044466.1| - 9.9e-08 31.8 0.0 1.5e-06 28.0 0.0 2.5 1 1 0 1 1 1 1 Phage integrase family FdsD PF11390.3 gi|313117483|ref|YP_004044466.1| - 0.0084 16.1 0.1 0.048 13.7 0.0 2.1 2 0 0 2 2 2 1 NADH-dependant formate dehydrogenase delta subunit FdsD BATS PF06968.8 gi|313117484|ref|YP_004044467.1| - 3.8e-23 81.1 0.0 1.7e-22 79.0 0.0 2.0 2 0 0 2 2 2 1 Biotin and Thiamin Synthesis associated domain Radical_SAM PF04055.16 gi|313117484|ref|YP_004044467.1| - 4.6e-13 49.6 0.1 1.9e-11 44.4 0.0 2.2 2 0 0 2 2 2 1 Radical SAM superfamily GFO_IDH_MocA PF01408.17 gi|313117485|ref|YP_004044468.1| - 0.00074 20.0 3.3 0.0035 17.8 0.2 2.9 3 1 0 3 3 3 1 Oxidoreductase family, NAD-binding Rossmann fold ELFV_dehydrog PF00208.16 gi|313117485|ref|YP_004044468.1| - 0.0012 18.4 0.1 0.003 17.1 0.1 1.6 1 0 0 1 1 1 1 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Saccharop_dh PF03435.13 gi|313117485|ref|YP_004044468.1| - 0.0038 16.2 0.8 0.024 13.6 0.5 2.2 1 1 0 1 1 1 1 Saccharopine dehydrogenase Pup PF05639.6 gi|313117485|ref|YP_004044468.1| - 5.4 7.5 7.4 2 8.9 1.2 2.6 2 1 0 2 2 2 0 Pup-like protein Aminotran_1_2 PF00155.16 gi|313117486|ref|YP_004044469.1| - 1.5e-61 208.4 0.0 1.7e-61 208.1 0.0 1.0 1 0 0 1 1 1 1 Aminotransferase class I and II Cys_Met_Meta_PP PF01053.15 gi|313117486|ref|YP_004044469.1| - 0.0013 17.1 0.0 0.0024 16.2 0.0 1.5 1 1 0 1 1 1 1 Cys/Met metabolism PLP-dependent enzyme DegT_DnrJ_EryC1 PF01041.12 gi|313117486|ref|YP_004044469.1| - 0.002 17.2 3.2 0.0053 15.8 2.0 1.9 2 1 0 2 2 2 1 DegT/DnrJ/EryC1/StrS aminotransferase family Aminotran_3 PF00202.16 gi|313117486|ref|YP_004044469.1| - 0.032 13.0 0.0 0.066 12.0 0.0 1.4 1 0 0 1 1 1 0 Aminotransferase class-III Aminotran_5 PF00266.14 gi|313117486|ref|YP_004044469.1| - 0.07 11.8 0.0 0.13 10.9 0.0 1.5 1 0 0 1 1 1 0 Aminotransferase class-V AAA_26 PF13500.1 gi|313117487|ref|YP_004044470.1| - 3.7e-38 131.1 0.0 4.3e-38 130.9 0.0 1.0 1 0 0 1 1 1 1 AAA domain CbiA PF01656.18 gi|313117487|ref|YP_004044470.1| - 3.3e-08 33.1 0.7 7.1e-08 32.0 0.5 1.6 1 1 0 1 1 1 1 CobQ/CobB/MinD/ParA nucleotide binding domain DUF1611 PF07755.6 gi|313117487|ref|YP_004044470.1| - 3.2e-05 22.7 1.8 0.00019 20.1 1.3 2.4 1 1 0 1 1 1 1 Protein of unknown function (DUF1611) FTHFS PF01268.14 gi|313117487|ref|YP_004044470.1| - 0.063 11.2 0.3 0.089 10.7 0.2 1.1 1 0 0 1 1 1 0 Formate--tetrahydrofolate ligase Abi PF02517.11 gi|313117488|ref|YP_004044471.1| - 2e-16 59.9 7.5 2e-16 59.9 5.2 2.8 3 1 0 3 3 3 1 CAAX protease self-immunity CcoS PF03597.10 gi|313117489|ref|YP_004044472.1| - 1.1 8.7 5.7 1.5 8.3 0.3 2.3 2 0 0 2 2 2 0 Cytochrome oxidase maturation protein cbb3-type Peripla_BP_2 PF01497.13 gi|313117491|ref|YP_004044474.1| - 4.9e-16 58.5 0.0 9.1e-16 57.7 0.0 1.4 1 0 0 1 1 1 1 Periplasmic binding protein TAT_signal PF10518.4 gi|313117491|ref|YP_004044474.1| - 0.014 15.3 0.1 0.035 14.1 0.1 1.7 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence Glyco_hydro_65m PF03632.10 gi|313117491|ref|YP_004044474.1| - 0.082 11.5 0.1 2.9 6.4 0.1 2.1 2 0 0 2 2 2 0 Glycosyl hydrolase family 65 central catalytic domain ABC2_membrane_2 PF12679.2 gi|313117492|ref|YP_004044475.1| - 4.2e-20 71.7 9.2 5.6e-20 71.3 6.3 1.2 1 0 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_4 PF12730.2 gi|313117492|ref|YP_004044475.1| - 5.7e-08 32.2 19.4 2e-07 30.3 13.2 1.8 1 1 0 1 1 1 1 ABC-2 family transporter protein ABC2_membrane_5 PF13346.1 gi|313117492|ref|YP_004044475.1| - 1.2e-06 27.9 4.0 1.2e-06 27.9 2.8 1.5 2 0 0 2 2 2 1 ABC-2 family transporter protein ABC2_membrane_3 PF12698.2 gi|313117492|ref|YP_004044475.1| - 6.9e-06 25.3 14.2 8.4e-06 25.0 9.8 1.1 1 0 0 1 1 1 1 ABC-2 family transporter protein DUF2561 PF10812.3 gi|313117492|ref|YP_004044475.1| - 0.0043 16.6 0.6 0.0043 16.6 0.4 2.1 2 0 0 2 2 2 1 Protein of unknown function (DUF2561) CD20 PF04103.10 gi|313117492|ref|YP_004044475.1| - 0.023 14.6 0.6 0.023 14.6 0.4 1.8 2 0 0 2 2 2 0 CD20-like family PQQ_2 PF13360.1 gi|313117493|ref|YP_004044476.1| - 1.8e-31 109.4 5.3 7.5e-21 74.6 0.1 2.8 1 1 0 2 2 2 2 PQQ-like domain PQQ_3 PF13570.1 gi|313117493|ref|YP_004044476.1| - 2.2e-21 75.4 14.3 0.0012 19.0 0.2 7.6 7 0 0 7 7 7 6 PQQ-like domain PQQ PF01011.16 gi|313117493|ref|YP_004044476.1| - 7.4e-19 66.2 2.4 0.01 15.3 0.0 6.4 6 0 0 6 6 6 5 PQQ enzyme repeat EFhand_Ca_insen PF08726.5 gi|313117493|ref|YP_004044476.1| - 0.051 13.5 0.0 0.097 12.6 0.0 1.5 1 0 0 1 1 1 0 Ca2+ insensitive EF hand TAT_signal PF10518.4 gi|313117493|ref|YP_004044476.1| - 0.17 11.9 1.6 0.61 10.2 1.1 1.9 1 0 0 1 1 1 0 TAT (twin-arginine translocation) pathway signal sequence